{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":222333398,"defaultBranch":"master","name":"mity","ownerLogin":"KCCG","currentUserCanPush":false,"isFork":true,"isEmpty":false,"createdAt":"2019-11-18T00:39:27.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/8252631?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1717732233.0","currentOid":""},"activityList":{"items":[{"before":"cb2394e061f89688fb8c251c80f5714834db1392","after":"5e46038d0ea679572d4c884e9adbd998b821eb1c","ref":"refs/heads/master","pushedAt":"2024-06-07T03:49:10.000Z","pushType":"pr_merge","commitsCount":24,"pusher":{"login":"christianfares","name":"Christian Fares","path":"/christianfares","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/28082069?s=80&v=4"},"commit":{"message":"Merge pull request #52 from KCCG/release/1.1.0\n\nRelease/1.1.0","shortMessageHtmlLink":"Merge pull request #52 from KCCG/release/1.1.0"}},{"before":null,"after":"02566c72163bff7aaa819df765f7b6ab4b9af966","ref":"refs/heads/release/1.1.0","pushedAt":"2024-06-07T03:41:55.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"christianfares","name":"Christian Fares","path":"/christianfares","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/28082069?s=80&v=4"},"commit":{"message":"Merge pull request #51 from KCCG/MITY-37-fix-report\n\nfixed names of chrm files in vcfanno-config-chrm","shortMessageHtmlLink":"Merge pull request #51 from KCCG/MITY-37-fix-report"}},{"before":"02566c72163bff7aaa819df765f7b6ab4b9af966","after":null,"ref":"refs/heads/release/v1.1.0","pushedAt":"2024-06-07T03:41:24.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"christianfares","name":"Christian Fares","path":"/christianfares","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/28082069?s=80&v=4"}},{"before":null,"after":"02566c72163bff7aaa819df765f7b6ab4b9af966","ref":"refs/heads/release/v1.1.0","pushedAt":"2024-06-07T03:41:13.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"christianfares","name":"Christian Fares","path":"/christianfares","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/28082069?s=80&v=4"},"commit":{"message":"Merge pull request #51 from KCCG/MITY-37-fix-report\n\nfixed names of chrm files in vcfanno-config-chrm","shortMessageHtmlLink":"Merge pull request #51 from KCCG/MITY-37-fix-report"}},{"before":"15e7995b535a5b28931694a4fa7937bb640e8f4c","after":"02566c72163bff7aaa819df765f7b6ab4b9af966","ref":"refs/heads/development","pushedAt":"2024-06-07T01:39:57.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"trentzz","name":"Trent Zeng","path":"/trentzz","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22253325?s=80&v=4"},"commit":{"message":"Merge pull request #51 from KCCG/MITY-37-fix-report\n\nfixed names of chrm files in vcfanno-config-chrm","shortMessageHtmlLink":"Merge pull request #51 from KCCG/MITY-37-fix-report"}},{"before":"b8588be61d4ab6beeb73aae56b769e2b20b33b15","after":"239e03ed0722d7b0f5da42bc1f11846a99ff0214","ref":"refs/heads/MITY-37-fix-report","pushedAt":"2024-06-07T01:19:59.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"trentzz","name":"Trent Zeng","path":"/trentzz","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22253325?s=80&v=4"},"commit":{"message":"fixed names of chrm files in vcfanno-config-chrm","shortMessageHtmlLink":"fixed names of chrm files in vcfanno-config-chrm"}},{"before":"32cd1703e2534af67d3e6077690285686816a9f9","after":"15e7995b535a5b28931694a4fa7937bb640e8f4c","ref":"refs/heads/development","pushedAt":"2024-06-07T00:47:49.000Z","pushType":"pr_merge","commitsCount":3,"pusher":{"login":"trentzz","name":"Trent Zeng","path":"/trentzz","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22253325?s=80&v=4"},"commit":{"message":"Merge pull request #50 from KCCG/MITY-37-fix-report\n\nadded handling for excel sheetname lengths of greater than 31 chars + some auto-pylint formatting","shortMessageHtmlLink":"Merge pull request #50 from KCCG/MITY-37-fix-report"}},{"before":"a50ad2d5c2a9f85037638af324470434c78c8e35","after":"b8588be61d4ab6beeb73aae56b769e2b20b33b15","ref":"refs/heads/MITY-37-fix-report","pushedAt":"2024-06-07T00:37:13.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"trentzz","name":"Trent Zeng","path":"/trentzz","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22253325?s=80&v=4"},"commit":{"message":"fixed quirk for mity report to match argparse normal input","shortMessageHtmlLink":"fixed quirk for mity report to match argparse normal input"}},{"before":"92aef8e48c1e03f4c940ba968541660714875cfd","after":"a50ad2d5c2a9f85037638af324470434c78c8e35","ref":"refs/heads/MITY-37-fix-report","pushedAt":"2024-06-07T00:26:55.000Z","pushType":"push","commitsCount":6,"pusher":{"login":"trentzz","name":"Trent Zeng","path":"/trentzz","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22253325?s=80&v=4"},"commit":{"message":"added handling for excel sheetname lengths of greater than 31 chars","shortMessageHtmlLink":"added handling for excel sheetname lengths of greater than 31 chars"}},{"before":"bf11682523186ae683b334d97475fc33138c3f04","after":"32cd1703e2534af67d3e6077690285686816a9f9","ref":"refs/heads/development","pushedAt":"2024-06-07T00:19:06.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"trentzz","name":"Trent Zeng","path":"/trentzz","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22253325?s=80&v=4"},"commit":{"message":"Merge pull request #49 from KCCG/feature/MITY-36-runall-option\n\nupdated runall commands inline with new report changes","shortMessageHtmlLink":"Merge pull request #49 from KCCG/feature/MITY-36-runall-option"}},{"before":"24c840b9fd30ad11a7540b399a42509ed62d1919","after":"db2c7279abe01624a6dc9358111c07e7995973da","ref":"refs/heads/feature/MITY-36-runall-option","pushedAt":"2024-06-07T00:14:21.000Z","pushType":"push","commitsCount":16,"pusher":{"login":"trentzz","name":"Trent Zeng","path":"/trentzz","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22253325?s=80&v=4"},"commit":{"message":"updated runall commands inline with new report changes","shortMessageHtmlLink":"updated runall commands inline with new report changes"}},{"before":"d2bf41222958695aae617d4db6ee57dd5ef93df3","after":"bf11682523186ae683b334d97475fc33138c3f04","ref":"refs/heads/development","pushedAt":"2024-06-06T23:15:58.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"christianfares","name":"Christian Fares","path":"/christianfares","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/28082069?s=80&v=4"},"commit":{"message":"Merge pull request #42 from KCCG/feature/MITY-36-runall-option\n\nAdded runall option to run mity call, normalise and report all in one go","shortMessageHtmlLink":"Merge pull request #42 from KCCG/feature/MITY-36-runall-option"}},{"before":"6a0b2794732eae8d779fcd112208b6e9063cf106","after":"d2bf41222958695aae617d4db6ee57dd5ef93df3","ref":"refs/heads/development","pushedAt":"2024-06-06T22:57:47.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"christianfares","name":"Christian Fares","path":"/christianfares","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/28082069?s=80&v=4"},"commit":{"message":"Merge pull request #48 from KCCG/MITY-37-fix-report\n\nMity 37 Fix report","shortMessageHtmlLink":"Merge pull request #48 from KCCG/MITY-37-fix-report"}},{"before":null,"after":"92aef8e48c1e03f4c940ba968541660714875cfd","ref":"refs/heads/MITY-37-fix-report","pushedAt":"2024-06-06T22:56:16.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"christianfares","name":"Christian Fares","path":"/christianfares","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/28082069?s=80&v=4"},"commit":{"message":"Updated mity report to add a base path for vcf anno if using the default vcfanno config","shortMessageHtmlLink":"Updated mity report to add a base path for vcf anno if using the defa…"}},{"before":"a6b17f703c2eb59b010602d71f47557b0b225fc5","after":"6a0b2794732eae8d779fcd112208b6e9063cf106","ref":"refs/heads/development","pushedAt":"2024-06-06T05:59:36.000Z","pushType":"pr_merge","commitsCount":4,"pusher":{"login":"trentzz","name":"Trent Zeng","path":"/trentzz","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22253325?s=80&v=4"},"commit":{"message":"Merge pull request #47 from KCCG/feature/MITY-39-add-other-chr-notations-no-new-mitomap\n\nFeature/mity 39 add other chr notations","shortMessageHtmlLink":"Merge pull request #47 from KCCG/feature/MITY-39-add-other-chr-notati…"}},{"before":"57100b7425fb49520d38681d01fe4822e1f0607f","after":"5647226b22a2e570d8d1a306edc562e94fa413b0","ref":"refs/heads/feature/MITY-39-add-other-chr-notations-no-new-mitomap","pushedAt":"2024-06-06T05:51:26.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"trentzz","name":"Trent Zeng","path":"/trentzz","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22253325?s=80&v=4"},"commit":{"message":"Updated setup.py to include new annotation file paths","shortMessageHtmlLink":"Updated setup.py to include new annotation file paths"}},{"before":"a760eb90d0e3932592d35f6196790ea5d44f6afb","after":"57100b7425fb49520d38681d01fe4822e1f0607f","ref":"refs/heads/feature/MITY-39-add-other-chr-notations-no-new-mitomap","pushedAt":"2024-06-06T05:48:20.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"trentzz","name":"Trent Zeng","path":"/trentzz","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22253325?s=80&v=4"},"commit":{"message":"Removed new mitomap changes for report.py and commands.py","shortMessageHtmlLink":"Removed new mitomap changes for report.py and commands.py"}},{"before":null,"after":"a760eb90d0e3932592d35f6196790ea5d44f6afb","ref":"refs/heads/feature/MITY-39-add-other-chr-notations-no-new-mitomap","pushedAt":"2024-06-06T05:26:00.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"trentzz","name":"Trent Zeng","path":"/trentzz","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22253325?s=80&v=4"},"commit":{"message":"Added chrm notations and options in commands for contig","shortMessageHtmlLink":"Added chrm notations and options in commands for contig"}},{"before":"49091371c29094b4f526069f08792469661e9977","after":"a760eb90d0e3932592d35f6196790ea5d44f6afb","ref":"refs/heads/feature/MITY-39-add-other-chr-notations","pushedAt":"2024-06-06T05:19:47.000Z","pushType":"push","commitsCount":5,"pusher":{"login":"trentzz","name":"Trent Zeng","path":"/trentzz","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22253325?s=80&v=4"},"commit":{"message":"Added chrm notations and options in commands for contig","shortMessageHtmlLink":"Added chrm notations and options in commands for contig"}},{"before":"6900e8d13a824e57208c2b12c2fa9236ad4f996e","after":"a6b17f703c2eb59b010602d71f47557b0b225fc5","ref":"refs/heads/development","pushedAt":"2024-06-06T02:37:49.000Z","pushType":"pr_merge","commitsCount":3,"pusher":{"login":"trentzz","name":"Trent Zeng","path":"/trentzz","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22253325?s=80&v=4"},"commit":{"message":"Merge pull request #46 from KCCG/hotfix/MITY-37-handle-report-config-file\n\nHotfix/mity 37 handle report config file","shortMessageHtmlLink":"Merge pull request #46 from KCCG/hotfix/MITY-37-handle-report-config-…"}},{"before":"648ebbc410ef999cd3974a14e08e8f9cfb4dfdf2","after":"1fb71645d02a30ae2fa82c8bc26c2f5955cce501","ref":"refs/heads/hotfix/MITY-37-handle-report-config-file","pushedAt":"2024-06-05T13:53:39.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"trentzz","name":"Trent Zeng","path":"/trentzz","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22253325?s=80&v=4"},"commit":{"message":"reverted quote changes to mity call bash command","shortMessageHtmlLink":"reverted quote changes to mity call bash command"}},{"before":"d6e9390fd0d7d5864e8fe2616c9b78088bb36b1a","after":"648ebbc410ef999cd3974a14e08e8f9cfb4dfdf2","ref":"refs/heads/hotfix/MITY-37-handle-report-config-file","pushedAt":"2024-06-05T13:47:31.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"trentzz","name":"Trent Zeng","path":"/trentzz","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22253325?s=80&v=4"},"commit":{"message":"moved config files to folder and added path in setup.py files","shortMessageHtmlLink":"moved config files to folder and added path in setup.py files"}},{"before":"49091371c29094b4f526069f08792469661e9977","after":"6900e8d13a824e57208c2b12c2fa9236ad4f996e","ref":"refs/heads/development","pushedAt":"2024-06-05T04:19:38.000Z","pushType":"pr_merge","commitsCount":3,"pusher":{"login":"trentzz","name":"Trent Zeng","path":"/trentzz","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22253325?s=80&v=4"},"commit":{"message":"Merge pull request #45 from KCCG/hotfix/MITY-37-handle-report-config-file\n\nAdded options for custom report and vcfanno config files and fixed searching for default files","shortMessageHtmlLink":"Merge pull request #45 from KCCG/hotfix/MITY-37-handle-report-config-…"}},{"before":"acd73e568e062555c9105bcb980f9ece922e5939","after":"d6e9390fd0d7d5864e8fe2616c9b78088bb36b1a","ref":"refs/heads/hotfix/MITY-37-handle-report-config-file","pushedAt":"2024-06-05T04:11:47.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"trentzz","name":"Trent Zeng","path":"/trentzz","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22253325?s=80&v=4"},"commit":{"message":"added options in commands for custom report and vcfanno configs","shortMessageHtmlLink":"added options in commands for custom report and vcfanno configs"}},{"before":"49091371c29094b4f526069f08792469661e9977","after":"acd73e568e062555c9105bcb980f9ece922e5939","ref":"refs/heads/hotfix/MITY-37-handle-report-config-file","pushedAt":"2024-06-05T01:09:24.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"trentzz","name":"Trent Zeng","path":"/trentzz","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22253325?s=80&v=4"},"commit":{"message":"added handling for when prefix is not specified in mity report","shortMessageHtmlLink":"added handling for when prefix is not specified in mity report"}},{"before":null,"after":"49091371c29094b4f526069f08792469661e9977","ref":"refs/heads/feature/MITY-39-add-other-chr-notations","pushedAt":"2024-06-05T00:45:42.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"trentzz","name":"Trent Zeng","path":"/trentzz","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22253325?s=80&v=4"},"commit":{"message":"Merge pull request #41 from KCCG/hotfix/MITY-35-add-vcfanno-to-dockerfile\n\nAdded vcfanno to dockerfile","shortMessageHtmlLink":"Merge pull request #41 from KCCG/hotfix/MITY-35-add-vcfanno-to-docker…"}},{"before":"49091371c29094b4f526069f08792469661e9977","after":null,"ref":"refs/heads/MITY-38-update-mitomap-version","pushedAt":"2024-05-29T13:35:05.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"trentzz","name":"Trent Zeng","path":"/trentzz","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22253325?s=80&v=4"}},{"before":null,"after":"49091371c29094b4f526069f08792469661e9977","ref":"refs/heads/feature/MITY-38-update-mitomap-version","pushedAt":"2024-05-29T13:35:04.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"trentzz","name":"Trent Zeng","path":"/trentzz","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22253325?s=80&v=4"},"commit":{"message":"Merge pull request #41 from KCCG/hotfix/MITY-35-add-vcfanno-to-dockerfile\n\nAdded vcfanno to dockerfile","shortMessageHtmlLink":"Merge pull request #41 from KCCG/hotfix/MITY-35-add-vcfanno-to-docker…"}},{"before":null,"after":"49091371c29094b4f526069f08792469661e9977","ref":"refs/heads/MITY-38-update-mitomap-version","pushedAt":"2024-05-29T13:34:23.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"trentzz","name":"Trent Zeng","path":"/trentzz","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22253325?s=80&v=4"},"commit":{"message":"Merge pull request #41 from KCCG/hotfix/MITY-35-add-vcfanno-to-dockerfile\n\nAdded vcfanno to dockerfile","shortMessageHtmlLink":"Merge pull request #41 from KCCG/hotfix/MITY-35-add-vcfanno-to-docker…"}},{"before":null,"after":"49091371c29094b4f526069f08792469661e9977","ref":"refs/heads/hotfix/MITY-37-handle-report-config-file","pushedAt":"2024-05-29T13:33:25.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"trentzz","name":"Trent Zeng","path":"/trentzz","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22253325?s=80&v=4"},"commit":{"message":"Merge pull request #41 from KCCG/hotfix/MITY-35-add-vcfanno-to-dockerfile\n\nAdded vcfanno to dockerfile","shortMessageHtmlLink":"Merge pull request #41 from KCCG/hotfix/MITY-35-add-vcfanno-to-docker…"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEXtE0vAA","startCursor":null,"endCursor":null}},"title":"Activity · KCCG/mity"}