{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":485495363,"defaultBranch":"master","name":"seapodym-codebase","ownerLogin":"PacificCommunity","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2022-04-25T18:49:58.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/15083408?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1712899022.0","currentOid":""},"activityList":{"items":[{"before":"828dfd1f0c671951f8f049c19fffda04161bca4c","after":"332ad54db684fc4a91b9d6ceda54ebf6031d41d7","ref":"refs/heads/dev_tagmodel","pushedAt":"2024-08-23T04:07:28.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"LucasBnnn","name":null,"path":"/LucasBnnn","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/60635285?s=80&v=4"},"commit":{"message":"Add fields to example-configs/skipjack/","shortMessageHtmlLink":"Add fields to example-configs/skipjack/"}},{"before":"d0a008b9f340e1cca123c604abca0f8f809c88e4","after":"828dfd1f0c671951f8f049c19fffda04161bca4c","ref":"refs/heads/dev_tagmodel","pushedAt":"2024-08-21T05:34:06.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"LucasBnnn","name":null,"path":"/LucasBnnn","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/60635285?s=80&v=4"},"commit":{"message":"Fix access to tagmaps when use_tag_masks is false","shortMessageHtmlLink":"Fix access to tagmaps when use_tag_masks is false"}},{"before":"533a8811401b944531284f0a85169789a9474c64","after":"6241056ee6f2f8043c3f3ecf5950993f1aef631a","ref":"refs/heads/dev_larvae_dynpop","pushedAt":"2024-08-19T04:25:15.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"LucasBnnn","name":null,"path":"/LucasBnnn","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/60635285?s=80&v=4"},"commit":{"message":"Compute larvae likelihood after nbstoskip","shortMessageHtmlLink":"Compute larvae likelihood after nbstoskip"}},{"before":"df38be61de2867f5686cfef899740d9e943fe00a","after":"533a8811401b944531284f0a85169789a9474c64","ref":"refs/heads/dev_larvae_dynpop","pushedAt":"2024-08-12T22:28:23.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"LucasBnnn","name":null,"path":"/LucasBnnn","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/60635285?s=80&v=4"},"commit":{"message":"Write age1.dym if larvae_likelihood","shortMessageHtmlLink":"Write age1.dym if larvae_likelihood"}},{"before":"8f3fd95ae17948bd6a012e1f01997039734c867d","after":"df38be61de2867f5686cfef899740d9e943fe00a","ref":"refs/heads/dev_larvae_dynpop","pushedAt":"2024-08-07T22:01:34.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"LucasBnnn","name":null,"path":"/LucasBnnn","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/60635285?s=80&v=4"},"commit":{"message":"Add configuration examples for larvae likelihood","shortMessageHtmlLink":"Add configuration examples for larvae likelihood"}},{"before":"f5997d7c415c46710dabe5c69262a907bcae75bf","after":"8f3fd95ae17948bd6a012e1f01997039734c867d","ref":"refs/heads/dev_larvae_dynpop","pushedAt":"2024-08-07T05:17:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"LucasBnnn","name":null,"path":"/LucasBnnn","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/60635285?s=80&v=4"},"commit":{"message":"Update README","shortMessageHtmlLink":"Update README"}},{"before":"559c617ebb93653264f3cdc80c5665ed2151eb95","after":"f5997d7c415c46710dabe5c69262a907bcae75bf","ref":"refs/heads/dev_larvae_dynpop","pushedAt":"2024-08-07T04:34:18.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"LucasBnnn","name":null,"path":"/LucasBnnn","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/60635285?s=80&v=4"},"commit":{"message":"New functioning of seapodym_habitats\n\nSet to \"1\" if classical fit to\n_spawning_habitat_input.dym\n\nSet to \"0\" if fit to q_sp_larvae * Habitat, with possibility of\ncategorical input data, aggregated input data, different likelihood\nfunctions","shortMessageHtmlLink":"New functioning of seapodym_habitats"}},{"before":"fb2051f72cf5787c65fcff63e1279b3b02609874","after":"559c617ebb93653264f3cdc80c5665ed2151eb95","ref":"refs/heads/dev_larvae_dynpop","pushedAt":"2024-08-07T00:33:48.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"LucasBnnn","name":null,"path":"/LucasBnnn","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/60635285?s=80&v=4"},"commit":{"message":"Allow non-aggregated larvae input in seapodym_eclt","shortMessageHtmlLink":"Allow non-aggregated larvae input in seapodym_eclt"}},{"before":"e01f6d07c5ab47bb7dd4e94856c8052703db9008","after":"6dd0b2469471efe90e2693f046d1724888d6025f","ref":"refs/heads/master","pushedAt":"2024-07-09T15:28:24.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"innasenina","name":"Inna Senina","path":"/innasenina","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6116620?s=80&v=4"},"commit":{"message":"updating dym library with tools","shortMessageHtmlLink":"updating dym library with tools"}},{"before":"d90cc45d32663ab784ce1bc064b4735d5dff8006","after":"fb2051f72cf5787c65fcff63e1279b3b02609874","ref":"refs/heads/dev_larvae_dynpop","pushedAt":"2024-06-02T23:45:12.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"LucasBnnn","name":null,"path":"/LucasBnnn","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/60635285?s=80&v=4"},"commit":{"message":"Fix upper bound in par_read() for some parameters","shortMessageHtmlLink":"Fix upper bound in par_read() for some parameters"}},{"before":"31d7a22582f4d48fee4646ae172936971bea836a","after":"d90cc45d32663ab784ce1bc064b4735d5dff8006","ref":"refs/heads/dev_larvae_dynpop","pushedAt":"2024-05-09T22:24:49.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"LucasBnnn","name":null,"path":"/LucasBnnn","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/60635285?s=80&v=4"},"commit":{"message":"Fix for Hyperspace_projection for seapodym_coupled\n\nBefore: no read of larvae file before Hyperspace_projection()","shortMessageHtmlLink":"Fix for Hyperspace_projection for seapodym_coupled"}},{"before":"8af8411d1a904d7730d66804e66bba400ed0e5af","after":"d0a008b9f340e1cca123c604abca0f8f809c88e4","ref":"refs/heads/dev_tagmodel","pushedAt":"2024-04-24T23:19:01.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"LucasBnnn","name":null,"path":"/LucasBnnn","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/60635285?s=80&v=4"},"commit":{"message":"Fix SeapodymCoupled::CalcSums()","shortMessageHtmlLink":"Fix SeapodymCoupled::CalcSums()"}},{"before":"6334a50468a64d07e47361568c84010391185d26","after":"31d7a22582f4d48fee4646ae172936971bea836a","ref":"refs/heads/dev_larvae_dynpop","pushedAt":"2024-04-18T00:54:19.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"LucasBnnn","name":null,"path":"/LucasBnnn","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/60635285?s=80&v=4"},"commit":{"message":"Renaming LCLT to ECLT\n\nL: Larvae -> E: Early life stage","shortMessageHtmlLink":"Renaming LCLT to ECLT"}},{"before":"6fc9e12f83a604d43c62e4a60c6bb92b09880215","after":"6334a50468a64d07e47361568c84010391185d26","ref":"refs/heads/dev_larvae_dynpop","pushedAt":"2024-04-18T00:51:45.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"LucasBnnn","name":null,"path":"/LucasBnnn","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/60635285?s=80&v=4"},"commit":{"message":"Renaming LCLT to ECLT\n\nL: Larvae -> E: Early life stage","shortMessageHtmlLink":"Renaming LCLT to ECLT"}},{"before":"9fc40c002fedf65a595898e96b7fd7f88f738534","after":"8af8411d1a904d7730d66804e66bba400ed0e5af","ref":"refs/heads/dev_tagmodel","pushedAt":"2024-04-18T00:47:27.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"LucasBnnn","name":null,"path":"/LucasBnnn","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/60635285?s=80&v=4"},"commit":{"message":"Add template parfile for\n\nNew fields:\nuse_tag_masks\nstrdir_tagmasks","shortMessageHtmlLink":"Add template parfile for"}},{"before":"6cfada9ae24367d5e6d515b2f29f4ec47218dda8","after":"9fc40c002fedf65a595898e96b7fd7f88f738534","ref":"refs/heads/dev_tagmodel","pushedAt":"2024-04-17T05:45:04.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"LucasBnnn","name":null,"path":"/LucasBnnn","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/60635285?s=80&v=4"},"commit":{"message":"Fix location of saved tag files (to match master c\n\nommit)","shortMessageHtmlLink":"Fix location of saved tag files (to match master c"}},{"before":"2e4d9bdd351dc273dcb4ff7f615e3652dd73ab78","after":"6cfada9ae24367d5e6d515b2f29f4ec47218dda8","ref":"refs/heads/dev_tagmodel","pushedAt":"2024-04-16T22:35:03.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"LucasBnnn","name":null,"path":"/LucasBnnn","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/60635285?s=80&v=4"},"commit":{"message":"Add better error message","shortMessageHtmlLink":"Add better error message"}},{"before":"e621b28160218f332b8e499ab7f57ca66e5ebfdc","after":"2e4d9bdd351dc273dcb4ff7f615e3652dd73ab78","ref":"refs/heads/dev_tagmodel","pushedAt":"2024-04-16T00:03:01.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"LucasBnnn","name":null,"path":"/LucasBnnn","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/60635285?s=80&v=4"},"commit":{"message":"Fix indentation Map.cpp","shortMessageHtmlLink":"Fix indentation Map.cpp"}},{"before":"e55eb63276a22d445940230fd975c732f2a27906","after":"e621b28160218f332b8e499ab7f57ca66e5ebfdc","ref":"refs/heads/dev_tagmodel","pushedAt":"2024-04-15T23:56:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"LucasBnnn","name":null,"path":"/LucasBnnn","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/60635285?s=80&v=4"},"commit":{"message":"Fixes","shortMessageHtmlLink":"Fixes"}},{"before":null,"after":"e55eb63276a22d445940230fd975c732f2a27906","ref":"refs/heads/dev_tagmodel","pushedAt":"2024-04-12T05:17:02.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"LucasBnnn","name":null,"path":"/LucasBnnn","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/60635285?s=80&v=4"},"commit":{"message":"Initial commit","shortMessageHtmlLink":"Initial commit"}},{"before":"2df806b58809e32381d8a3fcaf25886f7854cd7b","after":"6fc9e12f83a604d43c62e4a60c6bb92b09880215","ref":"refs/heads/dev_larvae_dynpop","pushedAt":"2024-03-25T05:55:16.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"LucasBnnn","name":null,"path":"/LucasBnnn","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/60635285?s=80&v=4"},"commit":{"message":"Changes for parfile compatibility\n\nCompatibility with parameter files of previous experiments without\nlarvae likelihood","shortMessageHtmlLink":"Changes for parfile compatibility"}},{"before":"53ef9eae2aae367f0d162faed23d59d038deceaa","after":"2df806b58809e32381d8a3fcaf25886f7854cd7b","ref":"refs/heads/dev_larvae_dynpop","pushedAt":"2024-03-14T06:25:52.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"LucasBnnn","name":null,"path":"/LucasBnnn","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/60635285?s=80&v=4"},"commit":{"message":"Small fix on error message","shortMessageHtmlLink":"Small fix on error message"}},{"before":"e6a1670a3935b4d6266f6d083ce12233cdfbf977","after":"53ef9eae2aae367f0d162faed23d59d038deceaa","ref":"refs/heads/dev_larvae_dynpop","pushedAt":"2024-03-04T04:56:26.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"LucasBnnn","name":null,"path":"/LucasBnnn","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/60635285?s=80&v=4"},"commit":{"message":"Enable different agg. groupings for larvae_input\n\nPreviously: considered as quarterly: [[1,2,3], [4,5,6], [7,8,9],\n[10,11,12]]\n\nNow any aggregation grouping -> only need to indicate the field\n: list of 1st months of each group\n\nEx: for monthly aggreation -> 1 2 3 4 5 6 7 8 9 10 11 12\nfor quarterly but with months [[12,1,2], [3,4,5], [6,7,8],\n[9,10,11]] -> 12 3 6 9","shortMessageHtmlLink":"Enable different agg. groupings for larvae_input"}},{"before":"99b275913c16403fac4d9bafefcdc5809f8fb850","after":"e6a1670a3935b4d6266f6d083ce12233cdfbf977","ref":"refs/heads/dev_larvae_dynpop","pushedAt":"2024-02-29T22:48:37.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"LucasBnnn","name":null,"path":"/LucasBnnn","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/60635285?s=80&v=4"},"commit":{"message":"Modif. Makefiles + re-structure\n\nIssue with seapodym_fluxes: OnRunCoupled() defined in\nsrc/SeapodymCoupled_OnCompFluxes.cpp -> there is no ReadLarvae() defined\nin this file but ReadLarvae is used in 'void prerun_model(sc)' in\nsrc/seapodym_coupled.cpp\n\n-> move prerun_model() out of seapodym_coupled/habitat/density.cpp and\ninto\nSeapodymCoupled_OnRunCoupled/OnRunHabitat/OnRunDensity/OnCompFluxes.cpp\nAlso, it is now a function of the class SeapodymCoupled:\nvoid SeapodymCoupled::prerun_model()\ninstead of\nvoid prerun_model(SeapodymCoupled& sc)","shortMessageHtmlLink":"Modif. Makefiles + re-structure"}},{"before":"0e12161bd789974bd74d09b19842d9416e8aaa74","after":"99b275913c16403fac4d9bafefcdc5809f8fb850","ref":"refs/heads/dev_larvae_dynpop","pushedAt":"2024-02-29T07:00:04.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"LucasBnnn","name":null,"path":"/LucasBnnn","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/60635285?s=80&v=4"},"commit":{"message":"Add seapodym_habitats to the branch\n\nAdapted to new context from dev_larvae branch","shortMessageHtmlLink":"Add seapodym_habitats to the branch"}},{"before":"ea5b9cb64a6a3a76741e01adf5f3763bb7e8530a","after":"0e12161bd789974bd74d09b19842d9416e8aaa74","ref":"refs/heads/dev_larvae_dynpop","pushedAt":"2024-02-28T22:19:08.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"LucasBnnn","name":null,"path":"/LucasBnnn","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/60635285?s=80&v=4"},"commit":{"message":"Fix issue with season calculated from \n\ninstead of being calculated from ","shortMessageHtmlLink":"Fix issue with season calculated from <t_count>"}},{"before":"59890a95b406fe44b5e8c84f12c52850c951cae1","after":"ea5b9cb64a6a3a76741e01adf5f3763bb7e8530a","ref":"refs/heads/dev_larvae_dynpop","pushedAt":"2024-02-28T22:08:11.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"LucasBnnn","name":null,"path":"/LucasBnnn","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/60635285?s=80&v=4"},"commit":{"message":"Add SST-dependent larvae mortality\n\nBack-calculation from age1 to estimate the density of\n-day old larvae\n\n-> used to fit obs. larvae data","shortMessageHtmlLink":"Add SST-dependent larvae mortality"}},{"before":"c9bff2cb724707926b652ef5c254e449e571e7b1","after":null,"ref":"refs/heads/dev_fix_tagfiles","pushedAt":"2024-01-17T17:40:36.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"innasenina","name":"Inna Senina","path":"/innasenina","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6116620?s=80&v=4"}},{"before":"5d037ee2d6570ca3a4ad6eacc445774635f4038f","after":"e01f6d07c5ab47bb7dd4e94856c8052703db9008","ref":"refs/heads/master","pushedAt":"2024-01-17T17:40:24.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"innasenina","name":"Inna Senina","path":"/innasenina","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6116620?s=80&v=4"},"commit":{"message":"Merge pull request #5 from PacificCommunity/dev_fix_tagfiles\n\nFix location of saved tag files","shortMessageHtmlLink":"Merge pull request #5 from PacificCommunity/dev_fix_tagfiles"}},{"before":"65efa91fe78791cecbf6630d0866c9156d5fe8d2","after":"59890a95b406fe44b5e8c84f12c52850c951cae1","ref":"refs/heads/dev_larvae_dynpop","pushedAt":"2024-01-17T07:02:37.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"LucasBnnn","name":null,"path":"/LucasBnnn","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/60635285?s=80&v=4"},"commit":{"message":"Modify variable name and executable name\n\nLarvae_density_at_obs -> Larvae_density_pred_at_obs\nseapodym_lcltags -> seapodym_lclt","shortMessageHtmlLink":"Modify variable name and executable name"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEofMWGgA","startCursor":null,"endCursor":null}},"title":"Activity ยท PacificCommunity/seapodym-codebase"}