From 94a9f24ed7d1e2c94a360dcba9a1b5265a1a9a59 Mon Sep 17 00:00:00 2001
From: gkarthik <xraydiffraction@gmail.com>
Date: Wed, 19 Jun 2024 14:14:29 -0700
Subject: [PATCH] Fixed ccpp workflow. Removed clang format check workflow.

* Install autoconf with brew.
* Bumped up htslib version for macos.
---
 .github/workflows/ccpp.yml               | 22 +++++++---------------
 .github/workflows/clang-format-check.yml | 11 -----------
 2 files changed, 7 insertions(+), 26 deletions(-)
 delete mode 100644 .github/workflows/clang-format-check.yml

diff --git a/.github/workflows/ccpp.yml b/.github/workflows/ccpp.yml
index 1ab5e3e6..d194cce9 100644
--- a/.github/workflows/ccpp.yml
+++ b/.github/workflows/ccpp.yml
@@ -57,30 +57,22 @@ jobs:
 
   build-macos:
 
-    runs-on: [ macos-latest ]
+    runs-on: [ macos-14 ]
 
     steps:
     - uses: actions/checkout@master
     - name: install GNU autotools
       run: |
-        curl -O http://ftp.gnu.org/gnu/autoconf/autoconf-2.69.tar.gz
-        tar zxvf autoconf-2.69.tar.gz
-        cd autoconf-2.69
-        ./configure && make && sudo make install
-        brew install automake libtool
+        brew install autoconf automake libtool
     - name: download htslib
-      run: wget https://github.com/samtools/htslib/archive/1.10.2.tar.gz
+      run: wget https://github.com/samtools/htslib/releases/download/1.12/htslib-1.12.tar.bz2
     - name: untar
-      run: tar xf 1.10.2.tar.gz
+      run: tar xf htslib-1.12.tar.bz2
     - name: install htslib
       run: |
-        cd htslib-1.10.2/
-        curl -O http://git.savannah.gnu.org/cgit/config.git/plain/config.sub
-        curl -O http://git.savannah.gnu.org/cgit/config.git/plain/config.guess
-        chmod +x config.guess config.sub
-        autoheader
-        autoconf
-        ./configure --build=aarch64-apple-darwin --host=aarch64-apple-darwin
+        cd htslib-1.12/
+        autoreconf -i
+        ./configure
         make
         sudo make install
     - name: autoconf
diff --git a/.github/workflows/clang-format-check.yml b/.github/workflows/clang-format-check.yml
deleted file mode 100644
index faca04e8..00000000
--- a/.github/workflows/clang-format-check.yml
+++ /dev/null
@@ -1,11 +0,0 @@
-name: Clang Format Checker
-on: [push]
-jobs:
-  clang-format-checking:
-    runs-on: ubuntu-latest
-    steps:
-      - uses: actions/checkout@v2
-      - uses: RafikFarhad/clang-format-github-action@v3
-        with:
-          sources: "src/**/*.h,src/**/*.c,tests/**/*.c,src/**/*.cpp,tests/**/*.cpp"
-          style: "Google"
\ No newline at end of file