{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":124933956,"defaultBranch":"develop","name":"tasks","ownerLogin":"biowdl","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2018-03-12T18:33:02.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/37308353?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1694069289.0","currentOid":""},"activityList":{"items":[{"before":"c3da2d570f653cf64c1632d064fb30c8554ccee7","after":"5a5bc99aeccc812ba666c308306cc7390e5933fe","ref":"refs/heads/neo","pushedAt":"2023-09-29T09:42:52.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"DavyCats","name":"Davy Cats","path":"/DavyCats","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13235632?s=80&v=4"},"commit":{"message":"fix missing placholder syntax","shortMessageHtmlLink":"fix missing placholder syntax"}},{"before":"19c2993a08a46aa7eb22ef892b81ebb71430f542","after":"c3da2d570f653cf64c1632d064fb30c8554ccee7","ref":"refs/heads/neo","pushedAt":"2023-09-29T09:16:19.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"DavyCats","name":"Davy Cats","path":"/DavyCats","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13235632?s=80&v=4"},"commit":{"message":"fix cp command","shortMessageHtmlLink":"fix cp command"}},{"before":"20a8563f389aa827a20a8d8d9f20a94923ea2b0c","after":"19c2993a08a46aa7eb22ef892b81ebb71430f542","ref":"refs/heads/neo","pushedAt":"2023-09-29T08:54:00.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"DavyCats","name":"Davy Cats","path":"/DavyCats","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13235632?s=80&v=4"},"commit":{"message":"fix copying of isofox data","shortMessageHtmlLink":"fix copying of isofox data"}},{"before":"063dc44c8794d78c077b82fe95a5d9ee25ffef74","after":"20a8563f389aa827a20a8d8d9f20a94923ea2b0c","ref":"refs/heads/neo","pushedAt":"2023-09-26T14:01:10.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"DavyCats","name":"Davy Cats","path":"/DavyCats","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13235632?s=80&v=4"},"commit":{"message":"sampleName should be sampleId","shortMessageHtmlLink":"sampleName should be sampleId"}},{"before":"0d283c64f051653041e8b7164d022a879e0db0a5","after":"063dc44c8794d78c077b82fe95a5d9ee25ffef74","ref":"refs/heads/neo","pushedAt":"2023-09-26T13:44:11.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"DavyCats","name":"Davy Cats","path":"/DavyCats","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13235632?s=80&v=4"},"commit":{"message":"make the sed command depend on the input","shortMessageHtmlLink":"make the sed command depend on the input"}},{"before":"6097d3db940364ba3d65abee4a420d18adb9be84","after":"0d283c64f051653041e8b7164d022a879e0db0a5","ref":"refs/heads/neo","pushedAt":"2023-09-26T13:41:15.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"DavyCats","name":"Davy Cats","path":"/DavyCats","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13235632?s=80&v=4"},"commit":{"message":"convert neoepitope csv into tsv for neoscorer","shortMessageHtmlLink":"convert neoepitope csv into tsv for neoscorer"}},{"before":"f28727ce1b6212918a1a38044850546f624bffed","after":"6097d3db940364ba3d65abee4a420d18adb9be84","ref":"refs/heads/neo","pushedAt":"2023-09-15T15:26:29.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"DavyCats","name":"Davy Cats","path":"/DavyCats","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13235632?s=80&v=4"},"commit":{"message":"increase time for isofox","shortMessageHtmlLink":"increase time for isofox"}},{"before":"24037d1f7aa7f6ab7b8aaa78897f79c3498ae31a","after":"f28727ce1b6212918a1a38044850546f624bffed","ref":"refs/heads/neo","pushedAt":"2023-09-15T11:48:50.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"DavyCats","name":"Davy Cats","path":"/DavyCats","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13235632?s=80&v=4"},"commit":{"message":"adjust isofox memory","shortMessageHtmlLink":"adjust isofox memory"}},{"before":"6433047a45cb9a0ea1f14f9dece90c8ae7de4209","after":"24037d1f7aa7f6ab7b8aaa78897f79c3498ae31a","ref":"refs/heads/neo","pushedAt":"2023-09-15T11:46:07.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"DavyCats","name":"Davy Cats","path":"/DavyCats","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13235632?s=80&v=4"},"commit":{"message":"add isofox outputs","shortMessageHtmlLink":"add isofox outputs"}},{"before":"c1a9308d593d9813bc8d0c1ede5fe66d883fc69d","after":"6433047a45cb9a0ea1f14f9dece90c8ae7de4209","ref":"refs/heads/neo","pushedAt":"2023-09-14T13:43:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"DavyCats","name":"Davy Cats","path":"/DavyCats","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13235632?s=80&v=4"},"commit":{"message":"increase memory for isofox","shortMessageHtmlLink":"increase memory for isofox"}},{"before":"b025103ca44ed04795329ab1eaac52476533b5ea","after":"c1a9308d593d9813bc8d0c1ede5fe66d883fc69d","ref":"refs/heads/neo","pushedAt":"2023-09-14T12:45:43.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"DavyCats","name":"Davy Cats","path":"/DavyCats","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13235632?s=80&v=4"},"commit":{"message":"increase isofox memory","shortMessageHtmlLink":"increase isofox memory"}},{"before":"c3c74a8406da01943e45e2a46961d32d6d959e72","after":"b025103ca44ed04795329ab1eaac52476533b5ea","ref":"refs/heads/neo","pushedAt":"2023-09-12T14:02:54.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"DavyCats","name":"Davy Cats","path":"/DavyCats","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13235632?s=80&v=4"},"commit":{"message":"add inputs to isofox for bam index","shortMessageHtmlLink":"add inputs to isofox for bam index"}},{"before":"37a23566001b8cc4e6703218277cb5bec909ea81","after":"c3c74a8406da01943e45e2a46961d32d6d959e72","ref":"refs/heads/neo","pushedAt":"2023-09-12T12:51:54.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"DavyCats","name":"Davy Cats","path":"/DavyCats","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13235632?s=80&v=4"},"commit":{"message":"split isofox neoepitope function into separate task","shortMessageHtmlLink":"split isofox neoepitope function into separate task"}},{"before":"9667c6ac49f5b486661e6e8e90ea025ea0f713f1","after":"37a23566001b8cc4e6703218277cb5bec909ea81","ref":"refs/heads/neo","pushedAt":"2023-09-07T11:54:47.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"DavyCats","name":"Davy Cats","path":"/DavyCats","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13235632?s=80&v=4"},"commit":{"message":"fix output name","shortMessageHtmlLink":"fix output name"}},{"before":"a7fa3b13715502af2ed48e96286db71ba81fc948","after":"9667c6ac49f5b486661e6e8e90ea025ea0f713f1","ref":"refs/heads/neo","pushedAt":"2023-09-07T11:24:18.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"DavyCats","name":"Davy Cats","path":"/DavyCats","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13235632?s=80&v=4"},"commit":{"message":"add isofox outputs","shortMessageHtmlLink":"add isofox outputs"}},{"before":"25477c5e208d38653e87fe1fb6c3deefd1eec35b","after":"2bf875300d90a3c9c8d670b3d99026452d5dbae2","ref":"refs/heads/develop","pushedAt":"2023-09-07T11:22:38.000Z","pushType":"pr_merge","commitsCount":3,"pusher":{"login":"DavyCats","name":"Davy Cats","path":"/DavyCats","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13235632?s=80&v=4"},"commit":{"message":"Merge pull request #324 from biowdl/Redmar-van-den-Berg-patch-1\n\nUse softlink instead of hardlinks for centrifuge","shortMessageHtmlLink":"Merge pull request #324 from biowdl/Redmar-van-den-Berg-patch-1"}},{"before":"3fb2c1de2e19f68f7a3ab3e205864bff21bb3ba1","after":"44cdc1862bf20b1cf77f0fedfb0ba25b3e5efa43","ref":"refs/heads/Redmar-van-den-Berg-patch-1","pushedAt":"2023-09-07T06:50:31.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Redmar-van-den-Berg","name":"Redmar van den Berg","path":"/Redmar-van-den-Berg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/15814544?s=80&v=4"},"commit":{"message":"Update changelog","shortMessageHtmlLink":"Update changelog"}},{"before":null,"after":"3fb2c1de2e19f68f7a3ab3e205864bff21bb3ba1","ref":"refs/heads/Redmar-van-den-Berg-patch-1","pushedAt":"2023-09-07T06:48:09.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"Redmar-van-den-Berg","name":"Redmar van den Berg","path":"/Redmar-van-den-Berg","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/15814544?s=80&v=4"},"commit":{"message":"Use softlink instead of hardlinks\n\nIf the database files are on a different filesystem then the analysis folder, hardlinks are not allowed, leading to crashes.","shortMessageHtmlLink":"Use softlink instead of hardlinks"}},{"before":"6210b3740be6f3de2f7f01d78de6d164022fdc65","after":"a7fa3b13715502af2ed48e96286db71ba81fc948","ref":"refs/heads/neo","pushedAt":"2023-09-06T11:44:11.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"DavyCats","name":"Davy Cats","path":"/DavyCats","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13235632?s=80&v=4"},"commit":{"message":"turn neo data tsv into csv for isofox","shortMessageHtmlLink":"turn neo data tsv into csv for isofox"}},{"before":"e4e98c72431c14ee7d578497aafd8a393c9f07b1","after":"6210b3740be6f3de2f7f01d78de6d164022fdc65","ref":"refs/heads/neo","pushedAt":"2023-09-05T13:34:18.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"DavyCats","name":"Davy Cats","path":"/DavyCats","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13235632?s=80&v=4"},"commit":{"message":"fix semi-colon issue","shortMessageHtmlLink":"fix semi-colon issue"}},{"before":"2d1156ab01d091a5048718aec2e82b019cc3338d","after":"e4e98c72431c14ee7d578497aafd8a393c9f07b1","ref":"refs/heads/neo","pushedAt":"2023-08-29T09:18:07.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"DavyCats","name":"Davy Cats","path":"/DavyCats","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13235632?s=80&v=4"},"commit":{"message":"make index output optional in sambamba markdup, remove index input from isofox and sageappend","shortMessageHtmlLink":"make index output optional in sambamba markdup, remove index input fr…"}},{"before":"67ca5b69a9565ada8de5df99e6dfe9ebfbfaf0a7","after":"2d1156ab01d091a5048718aec2e82b019cc3338d","ref":"refs/heads/neo","pushedAt":"2023-08-28T08:04:00.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"DavyCats","name":"Davy Cats","path":"/DavyCats","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13235632?s=80&v=4"},"commit":{"message":"add support for unsorted BAM file in STAR task","shortMessageHtmlLink":"add support for unsorted BAM file in STAR task"}},{"before":"7e142caf9edbef8d1a4f18fed20091b6a1e05f8e","after":"67ca5b69a9565ada8de5df99e6dfe9ebfbfaf0a7","ref":"refs/heads/neo","pushedAt":"2023-08-22T11:34:54.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"DavyCats","name":"Davy Cats","path":"/DavyCats","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13235632?s=80&v=4"},"commit":{"message":"add task for sage append","shortMessageHtmlLink":"add task for sage append"}},{"before":"fd29caaf7fc7a595e848d247fe70ff8b7a21a68a","after":"7e142caf9edbef8d1a4f18fed20091b6a1e05f8e","ref":"refs/heads/neo","pushedAt":"2023-08-22T09:47:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"DavyCats","name":"Davy Cats","path":"/DavyCats","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13235632?s=80&v=4"},"commit":{"message":"Fix lint issues","shortMessageHtmlLink":"Fix lint issues"}},{"before":"9b78048479804ea9ac7ff0dd95e7cd8b05f17cdb","after":"fd29caaf7fc7a595e848d247fe70ff8b7a21a68a","ref":"refs/heads/neo","pushedAt":"2023-08-22T09:38:00.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"DavyCats","name":"Davy Cats","path":"/DavyCats","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13235632?s=80&v=4"},"commit":{"message":"add optional inputs to star, add isofox task","shortMessageHtmlLink":"add optional inputs to star, add isofox task"}},{"before":"6735f4d9685c761044e2dd576557d0965f4a3e32","after":"9b78048479804ea9ac7ff0dd95e7cd8b05f17cdb","ref":"refs/heads/neo","pushedAt":"2023-07-21T12:06:39.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"DavyCats","name":"Davy Cats","path":"/DavyCats","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13235632?s=80&v=4"},"commit":{"message":"Merge branch '5.31_update' into neo","shortMessageHtmlLink":"Merge branch '5.31_update' into neo"}},{"before":"4991c67e4e12f7101d0b24c53ddf78e4e6ff3105","after":"fe131980526ff8703424a2b9cb0becf7a5b53cee","ref":"refs/heads/5.31_update","pushedAt":"2023-07-21T12:05:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"DavyCats","name":"Davy Cats","path":"/DavyCats","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13235632?s=80&v=4"},"commit":{"message":"fix ExtractSigPredictHRD","shortMessageHtmlLink":"fix ExtractSigPredictHRD"}},{"before":"7e987c575262400698cd525fbb178ef0cf960eea","after":"6735f4d9685c761044e2dd576557d0965f4a3e32","ref":"refs/heads/neo","pushedAt":"2023-07-21T07:52:41.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"DavyCats","name":"Davy Cats","path":"/DavyCats","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13235632?s=80&v=4"},"commit":{"message":"Merge branch '5.31_update' into neo","shortMessageHtmlLink":"Merge branch '5.31_update' into neo"}},{"before":"c10a063d488268e59c4100b81c5870f1c2d4714c","after":"4991c67e4e12f7101d0b24c53ddf78e4e6ff3105","ref":"refs/heads/5.31_update","pushedAt":"2023-07-21T07:50:44.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"DavyCats","name":"Davy Cats","path":"/DavyCats","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13235632?s=80&v=4"},"commit":{"message":"add mkdir to VirusInterpreter","shortMessageHtmlLink":"add mkdir to VirusInterpreter"}},{"before":"318eca8f907fc78b9658e0f67849e9a137f5ec90","after":"c10a063d488268e59c4100b81c5870f1c2d4714c","ref":"refs/heads/5.31_update","pushedAt":"2023-07-21T07:49:06.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"DavyCats","name":"Davy Cats","path":"/DavyCats","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13235632?s=80&v=4"},"commit":{"message":"add mkdir to ExtractSigPredictHRD","shortMessageHtmlLink":"add mkdir to ExtractSigPredictHRD"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAADi7AX7gA","startCursor":null,"endCursor":null}},"title":"Activity · biowdl/tasks"}