{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":341033411,"defaultBranch":"master","name":"GBSapp","ownerLogin":"bodeolukolu","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2021-02-22T00:10:55.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/53925092?v=4","public":true,"private":false,"isOrgOwned":false},"refInfo":{"name":"","listCacheKey":"v0:1721846725.0","currentOid":""},"activityList":{"items":[{"before":"201a9426b45d67367d05c4580f547e70483d4369","after":"7938af21b98036a55fb85eb4e8668b1a45e0ac3f","ref":"refs/heads/master","pushedAt":"2024-09-10T06:45:03.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bodeolukolu","name":"Bode Olukolu","path":"/bodeolukolu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53925092?s=80&v=4"},"commit":{"message":"reduce size of raw vcf chunks processed in R","shortMessageHtmlLink":"reduce size of raw vcf chunks processed in R"}},{"before":null,"after":"8f1d5b1ebdecfc7b14dfa9a6552ff6f559c4738c","ref":"refs/heads/fastq_capitalization_check","pushedAt":"2024-07-24T18:45:25.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"alockrow","name":"Amber Lockrow","path":"/alockrow","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/26778258?s=80&v=4"},"commit":{"message":"Check for and replace uppercase sample fastq file suffixes","shortMessageHtmlLink":"Check for and replace uppercase sample fastq file suffixes"}},{"before":"a88c68eb668e6b54ec3b277433c4f67ba059c2eb","after":"201a9426b45d67367d05c4580f547e70483d4369","ref":"refs/heads/master","pushedAt":"2024-07-22T11:07:16.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bodeolukolu","name":"Bode Olukolu","path":"/bodeolukolu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53925092?s=80&v=4"},"commit":{"message":"fix typo for non-reference subgenomes","shortMessageHtmlLink":"fix typo for non-reference subgenomes"}},{"before":"deba54a195fdecdf867ef8a5e81330fd020c5110","after":"a88c68eb668e6b54ec3b277433c4f67ba059c2eb","ref":"refs/heads/master","pushedAt":"2024-07-20T00:13:08.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bodeolukolu","name":"Bode Olukolu","path":"/bodeolukolu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53925092?s=80&v=4"},"commit":{"message":"check filename format","shortMessageHtmlLink":"check filename format"}},{"before":"f4d9986b23de7c01533367ce0856c474a01a5c9b","after":"deba54a195fdecdf867ef8a5e81330fd020c5110","ref":"refs/heads/master","pushedAt":"2024-07-19T02:01:28.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"bodeolukolu","name":"Bode Olukolu","path":"/bodeolukolu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53925092?s=80&v=4"},"commit":{"message":"Merge branch 'master' of https://github.com/bodeolukolu/GBSapp","shortMessageHtmlLink":"Merge branch 'master' of https://github.com/bodeolukolu/GBSapp"}},{"before":"7ae9c7804ade6bf7d07c7865db2af0bcb10be81c","after":"f4d9986b23de7c01533367ce0856c474a01a5c9b","ref":"refs/heads/master","pushedAt":"2024-07-13T13:08:26.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"bodeolukolu","name":"Bode Olukolu","path":"/bodeolukolu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53925092?s=80&v=4"},"commit":{"message":"Merge pull request #2 from bodeolukolu/topic/cmake_install_edit\n\nSimplify cmake command in install script to fix ngm installation issue","shortMessageHtmlLink":"Merge pull request #2 from bodeolukolu/topic/cmake_install_edit"}},{"before":"e4c37238f76af66f66f2e6438eca153c75a8d23e","after":"7ae9c7804ade6bf7d07c7865db2af0bcb10be81c","ref":"refs/heads/master","pushedAt":"2024-07-13T13:06:36.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bodeolukolu","name":"Bode Olukolu","path":"/bodeolukolu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53925092?s=80&v=4"},"commit":{"message":"fix typo in r script; boxplot","shortMessageHtmlLink":"fix typo in r script; boxplot"}},{"before":null,"after":"af3d6c4b31026b3e66ff36427f20709bf61c8590","ref":"refs/heads/topic/cmake_install_edit","pushedAt":"2024-07-11T18:42:30.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"alockrow","name":"Amber Lockrow","path":"/alockrow","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/26778258?s=80&v=4"},"commit":{"message":"Simplify cmake command in install script to fix ngm installation issue","shortMessageHtmlLink":"Simplify cmake command in install script to fix ngm installation issue"}},{"before":"fe9f6a758b0000602ee833238aa6ac0c9e21fc2d","after":"e4c37238f76af66f66f2e6438eca153c75a8d23e","ref":"refs/heads/master","pushedAt":"2024-05-20T12:20:23.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bodeolukolu","name":"Bode Olukolu","path":"/bodeolukolu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53925092?s=80&v=4"},"commit":{"message":"enhance memorof step after interrupted job","shortMessageHtmlLink":"enhance memorof step after interrupted job"}},{"before":"025d45a0e9e0dcfeb2553635696dd8d45fd6ac36","after":null,"ref":"refs/heads/installation_fixes","pushedAt":"2024-05-16T03:09:01.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"bodeolukolu","name":"Bode Olukolu","path":"/bodeolukolu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53925092?s=80&v=4"}},{"before":"19bef171bfd51b33326eb89d7f063ab11658c93a","after":"fe9f6a758b0000602ee833238aa6ac0c9e21fc2d","ref":"refs/heads/master","pushedAt":"2024-05-16T03:08:49.000Z","pushType":"pr_merge","commitsCount":4,"pusher":{"login":"bodeolukolu","name":"Bode Olukolu","path":"/bodeolukolu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53925092?s=80&v=4"},"commit":{"message":"Merge pull request #1 from bodeolukolu/installation_fixes\n\nInstallation fixes","shortMessageHtmlLink":"Merge pull request #1 from bodeolukolu/installation_fixes"}},{"before":"3d7429fb78e8c84ebaf7e4ae732ef98ca9001ab1","after":"19bef171bfd51b33326eb89d7f063ab11658c93a","ref":"refs/heads/master","pushedAt":"2024-05-16T03:01:08.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bodeolukolu","name":"Bode Olukolu","path":"/bodeolukolu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53925092?s=80&v=4"},"commit":{"message":"continue job if interrupted at GenotypeGVCFs step","shortMessageHtmlLink":"continue job if interrupted at GenotypeGVCFs step"}},{"before":null,"after":"025d45a0e9e0dcfeb2553635696dd8d45fd6ac36","ref":"refs/heads/installation_fixes","pushedAt":"2024-05-14T20:26:39.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"alockrow","name":"Amber Lockrow","path":"/alockrow","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/26778258?s=80&v=4"},"commit":{"message":"Add '/' to cd","shortMessageHtmlLink":"Add '/' to cd"}},{"before":"34943c0f12fa7cc0fbd2e0ebc3351713cdadf31b","after":"3d7429fb78e8c84ebaf7e4ae732ef98ca9001ab1","ref":"refs/heads/master","pushedAt":"2024-05-14T13:54:47.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bodeolukolu","name":"Bode Olukolu","path":"/bodeolukolu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53925092?s=80&v=4"},"commit":{"message":"fix bug: organize filtered results","shortMessageHtmlLink":"fix bug: organize filtered results"}},{"before":"b99ae4edc40558933afa06fcacd700dcf413338c","after":"34943c0f12fa7cc0fbd2e0ebc3351713cdadf31b","ref":"refs/heads/master","pushedAt":"2024-05-14T13:53:04.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bodeolukolu","name":"Bode Olukolu","path":"/bodeolukolu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53925092?s=80&v=4"},"commit":{"message":"fix bug: organize filtered results","shortMessageHtmlLink":"fix bug: organize filtered results"}},{"before":"b1f26c239190402144e3b0b4d5413d135ed37855","after":"b99ae4edc40558933afa06fcacd700dcf413338c","ref":"refs/heads/master","pushedAt":"2024-05-13T22:58:18.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bodeolukolu","name":"Bode Olukolu","path":"/bodeolukolu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53925092?s=80&v=4"},"commit":{"message":"double quoting soem variables","shortMessageHtmlLink":"double quoting soem variables"}},{"before":"4455e79942cd5edbd88e932ed83cf4b241f6f3b7","after":"b1f26c239190402144e3b0b4d5413d135ed37855","ref":"refs/heads/master","pushedAt":"2024-05-09T13:23:30.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bodeolukolu","name":"Bode Olukolu","path":"/bodeolukolu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53925092?s=80&v=4"},"commit":{"message":"GBSapp v2.2: check R-packages before run","shortMessageHtmlLink":"GBSapp v2.2: check R-packages before run"}},{"before":"190ad94841b3957d07f656953cd435aa301a0ca8","after":"4455e79942cd5edbd88e932ed83cf4b241f6f3b7","ref":"refs/heads/master","pushedAt":"2024-04-11T14:23:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bodeolukolu","name":"Bode Olukolu","path":"/bodeolukolu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53925092?s=80&v=4"},"commit":{"message":"reduce reference genome variables","shortMessageHtmlLink":"reduce reference genome variables"}},{"before":"42c8f8b8391e0a5a897d558346325945cec8feeb","after":"190ad94841b3957d07f656953cd435aa301a0ca8","ref":"refs/heads/master","pushedAt":"2024-04-09T18:38:24.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bodeolukolu","name":"Bode Olukolu","path":"/bodeolukolu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53925092?s=80&v=4"},"commit":{"message":"streamline analysis using haplomes & pan-genomes","shortMessageHtmlLink":"streamline analysis using haplomes & pan-genomes"}},{"before":"8fda5bad0bd1a2d6cbce01b4982668e12019259b","after":"42c8f8b8391e0a5a897d558346325945cec8feeb","ref":"refs/heads/master","pushedAt":"2024-04-09T18:18:24.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bodeolukolu","name":"Bode Olukolu","path":"/bodeolukolu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53925092?s=80&v=4"},"commit":{"message":"streamline analysis using haplomes & pan-genomes","shortMessageHtmlLink":"streamline analysis using haplomes & pan-genomes"}},{"before":"696f62bc04e9a767fb7763421e769f8961568027","after":"8fda5bad0bd1a2d6cbce01b4982668e12019259b","ref":"refs/heads/master","pushedAt":"2024-02-07T09:41:15.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bodeolukolu","name":"Bode Olukolu","path":"/bodeolukolu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53925092?s=80&v=4"},"commit":{"message":"allow usage of system-installed samtools, bcftools, & bedtools","shortMessageHtmlLink":"allow usage of system-installed samtools, bcftools, & bedtools"}},{"before":"9892f0f092ac36323d6b785f6dee7b8b04e06570","after":"696f62bc04e9a767fb7763421e769f8961568027","ref":"refs/heads/master","pushedAt":"2024-01-29T04:58:00.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bodeolukolu","name":"Bode Olukolu","path":"/bodeolukolu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53925092?s=80&v=4"},"commit":{"message":"fix R code for visualization","shortMessageHtmlLink":"fix R code for visualization"}},{"before":"a780d3a153c4e6bcf4f575d23499e3b6c5865b34","after":"9892f0f092ac36323d6b785f6dee7b8b04e06570","ref":"refs/heads/master","pushedAt":"2024-01-27T07:53:14.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bodeolukolu","name":"Bode Olukolu","path":"/bodeolukolu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53925092?s=80&v=4"},"commit":{"message":"view pipeline help","shortMessageHtmlLink":"view pipeline help"}},{"before":"8a6b4b4cced669a3efdea9e203f96338ff3e5565","after":"a780d3a153c4e6bcf4f575d23499e3b6c5865b34","ref":"refs/heads/master","pushedAt":"2024-01-27T07:30:47.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bodeolukolu","name":"Bode Olukolu","path":"/bodeolukolu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53925092?s=80&v=4"},"commit":{"message":"view pipeline help","shortMessageHtmlLink":"view pipeline help"}},{"before":"1f1082225e34bd1fa2d438f23cb090cbda5145d0","after":"8a6b4b4cced669a3efdea9e203f96338ff3e5565","ref":"refs/heads/master","pushedAt":"2024-01-26T08:16:30.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bodeolukolu","name":"Bode Olukolu","path":"/bodeolukolu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53925092?s=80&v=4"},"commit":{"message":"view pipeline help","shortMessageHtmlLink":"view pipeline help"}},{"before":"ce12b38e58413d6136a03a0a032bc7afd62dff43","after":"1f1082225e34bd1fa2d438f23cb090cbda5145d0","ref":"refs/heads/master","pushedAt":"2024-01-02T04:50:20.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bodeolukolu","name":"Bode Olukolu","path":"/bodeolukolu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53925092?s=80&v=4"},"commit":{"message":"update extraction of variant sequence context","shortMessageHtmlLink":"update extraction of variant sequence context"}},{"before":"1e0b85f87279d800c4c645248c70a15b35ee202d","after":"ce12b38e58413d6136a03a0a032bc7afd62dff43","ref":"refs/heads/master","pushedAt":"2023-12-18T12:06:39.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bodeolukolu","name":"Bode Olukolu","path":"/bodeolukolu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53925092?s=80&v=4"},"commit":{"message":"trim homopolymers & report alignment residueas low as 20 bases","shortMessageHtmlLink":"trim homopolymers & report alignment residueas low as 20 bases"}},{"before":"9afe99e6abb105a07c91f08f6543e2b8b9c23565","after":"1e0b85f87279d800c4c645248c70a15b35ee202d","ref":"refs/heads/master","pushedAt":"2023-12-07T20:18:23.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bodeolukolu","name":"Bode Olukolu","path":"/bodeolukolu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53925092?s=80&v=4"},"commit":{"message":"update single sample profiling","shortMessageHtmlLink":"update single sample profiling"}},{"before":"addf4d747a7fab9443b212db4efd8a4ff355dc96","after":"9afe99e6abb105a07c91f08f6543e2b8b9c23565","ref":"refs/heads/master","pushedAt":"2023-12-03T06:50:10.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bodeolukolu","name":"Bode Olukolu","path":"/bodeolukolu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53925092?s=80&v=4"},"commit":{"message":"update for single sample variant calling/filtering2","shortMessageHtmlLink":"update for single sample variant calling/filtering2"}},{"before":"6d7ae7e904b74919c44cd157351dd95d7aa4653e","after":"addf4d747a7fab9443b212db4efd8a4ff355dc96","ref":"refs/heads/master","pushedAt":"2023-11-29T06:08:53.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bodeolukolu","name":"Bode Olukolu","path":"/bodeolukolu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53925092?s=80&v=4"},"commit":{"message":"update for single sample variant calling/filtering","shortMessageHtmlLink":"update for single sample variant calling/filtering"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"Y3Vyc29yOnYyOpK7MjAyNC0wOS0xMFQwNjo0NTowMy4wMDAwMDBazwAAAASxsMP8","startCursor":"Y3Vyc29yOnYyOpK7MjAyNC0wOS0xMFQwNjo0NTowMy4wMDAwMDBazwAAAASxsMP8","endCursor":"Y3Vyc29yOnYyOpK7MjAyMy0xMS0yOVQwNjowODo1My4wMDAwMDBazwAAAAO6jyEm"}},"title":"Activity ยท bodeolukolu/GBSapp"}