From 462b49b266df5f5ba58f12f04ecb14be4e017d89 Mon Sep 17 00:00:00 2001
From: Chris Norman <cnorman@broadinstitute.org>
Date: Tue, 27 Sep 2022 08:38:31 -0400
Subject: [PATCH] Another prefs variant.

---
 gatk | 6 ++++--
 1 file changed, 4 insertions(+), 2 deletions(-)

diff --git a/gatk b/gatk
index c1a082bc2ce..6d515be8acb 100755
--- a/gatk
+++ b/gatk
@@ -89,6 +89,7 @@ EXTRA_JAVA_OPTIONS_SPARK= "-DGATK_STACKTRACE_ON_USER_EXCEPTION=true " \
                     "--add-opens", "java.base/jdk.internal.module=ALL-UNNAMED " \
                     "--add-opens", "java.base/java.lang.module=ALL-UNNAMED " \
                     "--add-opens", "java.security.jgss/sun.security.krb5=ALL-UNNAMED " \
+                    "--add-opens", "java.prefs/java.util.prefs=ALL-UNNAMED " \
                     "-Dio.netty.tryReflectionSetAccessible=true"
 
 PACKAGED_LOCAL_JAR_OPTIONS= [
@@ -146,8 +147,9 @@ PACKAGED_LOCAL_JAR_OPTIONS= [
                     "--add-opens", "jdk.jfr/jdk.jfr.internal.management=ALL-UNNAMED",
                     "--add-opens", "java.base/jdk.internal.module=ALL-UNNAMED",
                     "--add-opens", "java.base/java.lang.module=ALL-UNNAMED",
-                    "--add-opens", "java.security.jgss/sun.security.krb5=ALL-UNNAMED",                                                                                                                                                                                                                                                                           "-Dio.netty.tryReflectionSetAccessible=true"
-                    "--add-opens", "java.prefs/java.util.prefs=ALL-UNNAMED"
+                    "--add-opens", "java.security.jgss/sun.security.krb5=ALL-UNNAMED",
+                    "--add-opens", "java.prefs/java.util.prefs=ALL-UNNAMED",
+                    "-Dio.netty.tryReflectionSetAccessible=true"
 ]
 
 DEFAULT_SPARK_ARGS_PREFIX = '--conf'