From ca21174230820b9c5ed8900d054ad10ef7dccd1f Mon Sep 17 00:00:00 2001 From: Samuel Lee Date: Wed, 14 Dec 2022 08:19:21 -0500 Subject: [PATCH] Removed commented lines from somatic CNV WDL. --- scripts/cnv_wdl/somatic/cnv_somatic_pair_workflow.wdl | 5 ----- 1 file changed, 5 deletions(-) diff --git a/scripts/cnv_wdl/somatic/cnv_somatic_pair_workflow.wdl b/scripts/cnv_wdl/somatic/cnv_somatic_pair_workflow.wdl index b96d9b553e3..04e8b59d424 100644 --- a/scripts/cnv_wdl/somatic/cnv_somatic_pair_workflow.wdl +++ b/scripts/cnv_wdl/somatic/cnv_somatic_pair_workflow.wdl @@ -575,11 +575,6 @@ workflow CNVSomaticPairWorkflow { Float? scaled_delta_MAD_value_normal = PlotDenoisedCopyRatiosNormal.scaled_delta_MAD_value File? modeled_segments_plot_normal = PlotModeledSegmentsNormal.modeled_segments_plot - # File? oncotated_called_file_tumor = select_first([CNVOncotatorWorkflow.oncotated_called_file, "null"]) - # File? oncotated_called_gene_list_file_tumor = select_first([CNVOncotatorWorkflow.oncotated_called_gene_list_file, "null"]) - # File? funcotated_called_file_tumor = select_first([CNVFuncotateSegmentsWorkflow.funcotated_seg_simple_tsv, "null"]) - # File? funcotated_called_gene_list_file_tumor = select_first([CNVFuncotateSegmentsWorkflow.funcotated_gene_list_tsv, "null"]) - File? oncotated_called_file_tumor = CNVOncotatorWorkflow.oncotated_called_file File? oncotated_called_gene_list_file_tumor = CNVOncotatorWorkflow.oncotated_called_gene_list_file File? funcotated_called_file_tumor = CNVFuncotateSegmentsWorkflow.funcotated_seg_simple_tsv