diff --git a/src/main/java/org/broadinstitute/hellbender/tools/walkers/gnarlyGenotyper/GnarlyGenotyper.java b/src/main/java/org/broadinstitute/hellbender/tools/walkers/gnarlyGenotyper/GnarlyGenotyper.java index 6b7edb19c02..b6f192cb735 100644 --- a/src/main/java/org/broadinstitute/hellbender/tools/walkers/gnarlyGenotyper/GnarlyGenotyper.java +++ b/src/main/java/org/broadinstitute/hellbender/tools/walkers/gnarlyGenotyper/GnarlyGenotyper.java @@ -90,8 +90,6 @@ @BetaFeature public final class GnarlyGenotyper extends VariantWalker { - public static final int PIPELINE_MAX_ALT_COUNT = GenotypeCalculationArgumentCollection.DEFAULT_MAX_ALTERNATE_ALLELES; - private static final OneShotLogger warning = new OneShotLogger(GnarlyGenotyper.class); private static final boolean CALL_GENOTYPES = true; diff --git a/src/main/java/org/broadinstitute/hellbender/tools/walkers/gnarlyGenotyper/GnarlyGenotyperEngine.java b/src/main/java/org/broadinstitute/hellbender/tools/walkers/gnarlyGenotyper/GnarlyGenotyperEngine.java index 2dd89345cfe..7efb5687ac3 100644 --- a/src/main/java/org/broadinstitute/hellbender/tools/walkers/gnarlyGenotyper/GnarlyGenotyperEngine.java +++ b/src/main/java/org/broadinstitute/hellbender/tools/walkers/gnarlyGenotyper/GnarlyGenotyperEngine.java @@ -9,9 +9,7 @@ import org.broadinstitute.hellbender.exceptions.UserException; import org.broadinstitute.hellbender.tools.walkers.annotator.*; import org.broadinstitute.hellbender.tools.walkers.annotator.allelespecific.*; -import org.broadinstitute.hellbender.tools.walkers.genotyper.GenotypeAlleleCounts; -import org.broadinstitute.hellbender.tools.walkers.genotyper.GenotypeCalculationArgumentCollection; -import org.broadinstitute.hellbender.tools.walkers.genotyper.GenotypesCache; +import org.broadinstitute.hellbender.tools.walkers.genotyper.*; import org.broadinstitute.hellbender.utils.GenotypeCounts; import org.broadinstitute.hellbender.utils.MathUtils; import org.broadinstitute.hellbender.utils.variant.GATKVCFConstants; @@ -41,6 +39,7 @@ public final class GnarlyGenotyperEngine { // cache the ploidy 2 PL array sizes for increasing numbers of alts up to the maximum of maxAltAllelesToOutput private int[] likelihoodSizeCache; + private final ArrayList glcCache = new ArrayList<>(); private Set> allASAnnotations; private final int maxAltAllelesToOutput; @@ -58,12 +57,6 @@ public GnarlyGenotyperEngine(final boolean keepAllSites, final int maxAltAlleles this.keepAllSites = keepAllSites; this.stripASAnnotations = stripASAnnotations; - //initialize PL size cache -- HTSJDK cache only goes up to 4 alts, but I need 6 - likelihoodSizeCache = new int[maxAltAllelesToOutput + 1 + 1]; //+1 for ref and +1 so index == numAlleles - for (final int numAlleles : IntStream.rangeClosed(1, maxAltAllelesToOutput + 1).boxed().collect(Collectors.toList())) { - likelihoodSizeCache[numAlleles] = GenotypeLikelihoods.numLikelihoods(numAlleles, ASSUMED_PLOIDY); - } - //TODO: fix weird reflection logging? final Reflections reflections = new Reflections("org.broadinstitute.hellbender.tools.walkers.annotator.allelespecific"); allASAnnotations = reflections.getSubTypesOf(InfoFieldAnnotation.class); @@ -320,34 +313,32 @@ protected GenotypesContext iterateOnGenotypes(final VariantContext vc, final Lis int newPLsize = -1; final int maximumAlleleCount = inputAllelesWithNonRef.size(); final int numConcreteAlts = maximumAlleleCount - 2; //-1 for NON_REF and -1 for ref - if (maximumAlleleCount <= maxAllelesToOutput) { - newPLsize = likelihoodSizeCache[numConcreteAlts + 1]; //cache is indexed by #alleles with ref; don't count NON_REF - } else { - newPLsize = GenotypeLikelihoods.numLikelihoods(numConcreteAlts + 1, ASSUMED_PLOIDY); - } for ( final Genotype g : vc.getGenotypes() ) { final String name = g.getSampleName(); - if(g.getPloidy() != ASSUMED_PLOIDY && !isGDBnoCall(g)) { - throw new UserException.BadInput("This tool assumes diploid genotypes, but sample " + name + " has ploidy " - + g.getPloidy() + " at position " + vc.getContig() + ":" + vc.getStart() + "."); - } final Genotype calledGT; final GenotypeBuilder genotypeBuilder = new GenotypeBuilder(g); genotypeBuilder.name(name); - if (isGDBnoCall(g) || g.getAllele(0).equals(Allele.NON_REF_ALLELE) || g.getAllele(1).equals(Allele.NON_REF_ALLELE)) { - genotypeBuilder.alleles(GATKVariantContextUtils.noCallAlleles(ASSUMED_PLOIDY)); + if (g.getAlleles().contains(Allele.NON_REF_ALLELE)) { + genotypeBuilder.alleles(GATKVariantContextUtils.noCallAlleles(g.getPloidy())).noGQ(); + //there will be cases when we're running over Y or haploid X and we haven't seen any variants yet + // and we assume diploid when we shouldn't, but there's not a lot to be done about it + } else if (isGDBnoCall(g)) { + genotypeBuilder.alleles(GATKVariantContextUtils.noCallAlleles(ASSUMED_PLOIDY)).noGQ(); } - else if (nonRefReturned) { - if (g.hasAD()) { - final int[] AD = trimADs(g, targetAlleles.size()); - genotypeBuilder.AD(AD); - } - else if (g.countAllele(Allele.NON_REF_ALLELE) > 0) { - genotypeBuilder.alleles(GATKVariantContextUtils.noCallAlleles(ASSUMED_PLOIDY)).noGQ(); - } + if (nonRefReturned && g.hasAD()) { + final int[] AD = trimADs(g, targetAlleles.size()); + genotypeBuilder.AD(AD); } if (g.hasPL()) { + //lookup PL size from cache if ploidy matches and cache has our number of alts + if (maximumAlleleCount <= maxAllelesToOutput && g.getPloidy() == ASSUMED_PLOIDY) { + newPLsize = GenotypeIndexCalculator.genotypeCount(g.getPloidy(), numConcreteAlts+1); + //newPLsize = likelihoodSizeCache[numConcreteAlts + 1]; //cache is indexed by #alleles with ref; don't count NON_REF + //otherwise calculate size on the fly + } else { + newPLsize = GenotypeLikelihoods.numLikelihoods(numConcreteAlts + 1, g.getPloidy()); + } final int[] PLs = trimPLs(g, newPLsize); if (emitPLs) { genotypeBuilder.PL(PLs); @@ -357,7 +348,7 @@ else if (g.countAllele(Allele.NON_REF_ALLELE) > 0) { genotypeBuilder.GQ(MathUtils.secondSmallestMinusSmallest(PLs, 0)); //If GenomicsDB returns no-call genotypes like CombineGVCFs (depending on the GenomicsDBExportConfiguration), // then we need to actually find the GT from PLs - makeGenotypeCall(genotypeBuilder, GenotypeLikelihoods.fromPLs(PLs).getAsVector(), targetAlleles); + makeGenotypeCall(g, genotypeBuilder, GenotypeLikelihoods.fromPLs(PLs).getAsVector(), targetAlleles); } final Map attrs = new HashMap<>(g.getExtendedAttributes()); attrs.remove(GATKVCFConstants.MIN_DP_FORMAT_KEY); @@ -370,7 +361,7 @@ else if (g.countAllele(Allele.NON_REF_ALLELE) > 0) { } //running total for AC values - for (int i = 0; i < ASSUMED_PLOIDY; i++) { + for (int i = 0; i < calledGT.getPloidy(); i++) { final Allele a = calledGT.getAllele(i); final int count = targetAlleleCounts.getOrDefault(a, 0); if (!a.equals(Allele.NO_CALL)) { @@ -391,37 +382,32 @@ else if (g.countAllele(Allele.NON_REF_ALLELE) > 0) { * For a genotype with likelihoods that has a no-call GT, determine the most likely genotype from PLs and set it * We use a GenotypeLikelihoodCalculator to convert from the best PL index to the indexes of the alleles for that * genotype so we can set the GenotypeBuilder with the alleles + * @param g Genotype used to make the gb GenotypeBuilder * @param gb GenotypeBuilder to modify and pass back * @param genotypeLikelihoods PLs to use to call genotype; count should agree with number of alleles in allelesToUse * @param allelesToUse alleles in the parent VariantContext (with ref), because GenotypeBuilder needs the allele String rather than index */ @VisibleForTesting - protected void makeGenotypeCall(final GenotypeBuilder gb, + protected void makeGenotypeCall(final Genotype g, final GenotypeBuilder gb, final double[] genotypeLikelihoods, final List allelesToUse) { - final int maxAllelesToOutput = maxAltAllelesToOutput + 1; //+1 for ref - if ( genotypeLikelihoods == null || !GATKVariantContextUtils.isInformative(genotypeLikelihoods) ) { - gb.alleles(GATKVariantContextUtils.noCallAlleles(ASSUMED_PLOIDY)).noGQ(); + //gb.alleles(GATKVariantContextUtils.noCallAlleles(g.getAlleles().size())).noGQ(); + GATKVariantContextUtils.makeGenotypeCall(g.getPloidy(), gb, GenotypeAssignmentMethod.SET_TO_NO_CALL, + genotypeLikelihoods, allelesToUse, null); } else { - final int maxLikelihoodIndex = MathUtils.maxElementIndex(genotypeLikelihoods); - final GenotypeAlleleCounts alleleCounts = GenotypesCache.get(ASSUMED_PLOIDY, maxLikelihoodIndex); - - gb.alleles(alleleCounts.asAlleleList(allelesToUse)); - final int numAltAlleles = allelesToUse.size() - 1; - if ( numAltAlleles > 0 ) { - gb.log10PError(GenotypeLikelihoods.getGQLog10FromLikelihoods(maxLikelihoodIndex, genotypeLikelihoods)); - } + GATKVariantContextUtils.makeGenotypeCall(g.getPloidy(), gb, GenotypeAssignmentMethod.USE_PLS_TO_ASSIGN, + genotypeLikelihoods, allelesToUse, null); } } /** * Some legacy versions of GenomicsDB report no-calls as `0` or `.` * @param g genotype to check - * @return true if this is a genotype that should be represented as a ploidy-aware, spec compliant no-call + * @return true if this is a genotype that should be represented spec compliant no-call (may need to fix ploidy) */ private static boolean isGDBnoCall(final Genotype g) { - return g.getPloidy() == 1 && (g.getAllele(0).isReference() || g.getAllele(0).isNoCall()); + return !g.hasPL() && !g.hasAD() && g.isNoCall(); } /** diff --git a/src/test/java/org/broadinstitute/hellbender/tools/walkers/GnarlyGenotyperIntegrationTest.java b/src/test/java/org/broadinstitute/hellbender/tools/walkers/GnarlyGenotyperIntegrationTest.java index b37a31339d2..5f981f1e8da 100644 --- a/src/test/java/org/broadinstitute/hellbender/tools/walkers/GnarlyGenotyperIntegrationTest.java +++ b/src/test/java/org/broadinstitute/hellbender/tools/walkers/GnarlyGenotyperIntegrationTest.java @@ -1,5 +1,7 @@ package org.broadinstitute.hellbender.tools.walkers; +import htsjdk.variant.variantcontext.Allele; +import htsjdk.variant.variantcontext.Genotype; import htsjdk.variant.variantcontext.VariantContext; import htsjdk.variant.vcf.VCFConstants; import htsjdk.variant.vcf.VCFHeader; @@ -8,7 +10,6 @@ import org.broadinstitute.hellbender.GATKBaseTest; import org.broadinstitute.hellbender.cmdline.StandardArgumentDefinitions; import org.broadinstitute.hellbender.engine.FeatureDataSource; -import org.broadinstitute.hellbender.tools.walkers.annotator.allelespecific.AS_RMSMappingQuality; import org.broadinstitute.hellbender.utils.IntervalUtils; import org.broadinstitute.hellbender.utils.SimpleInterval; import org.broadinstitute.hellbender.testutils.ArgumentsBuilder; @@ -22,7 +23,6 @@ import java.io.File; import java.io.IOException; -import java.util.ArrayList; import java.util.Arrays; import java.util.Collections; import java.util.List; @@ -53,13 +53,19 @@ public void assertThatExpectedOutputUpdateToggleIsDisabled() { @DataProvider(name="VCFdata") public Object[][] getVCFdata() { return new Object[][]{ + /* + //chrX haploid sample plus diploid sample -- expected results validated with vcf-validator (samtools?) + {new File[]{getTestFile("NA12891.chrX.haploid.rb.g.vcf"), getTestFile("NA12892.chrX.diploid.rb.g.vcf")}, + getTestFile("haploidPlusDiploid.expected.vcf"), null, Arrays.asList(new SimpleInterval("chrX", 1000000, 5000000)), Arrays.asList("--merge-input-intervals", "--only-output-calls-starting-in-intervals"), b38_reference_20_21}, + //8 ALT alleles -- no PLs {new File[]{getTestFile("sample6.vcf"), getTestFile("sample7.vcf"), getTestFile("sample8.vcf"), getTestFile("sample9.vcf")}, getTestFile("lotsOfAltsNoPLs.vcf"), null, Arrays.asList(new SimpleInterval("chr20", 257008, 257008)), Arrays.asList("--merge-input-intervals", "--only-output-calls-starting-in-intervals"), b38_reference_20_21}, //6 ALT alleles -- yes PLs {new File[]{getTestFile("sample6.vcf"), getTestFile("sample7.vcf"), getTestFile("sample8.vcf")}, getTestFile("lotsOfAltsYesPLs.vcf"), null, Arrays.asList(new SimpleInterval("chr20", 257008, 257008)), Arrays.asList("--merge-input-intervals", "--only-output-calls-starting-in-intervals"), b38_reference_20_21}, - // Simple Test, spanning deletions; standard calling confidence + */ + // Simple Test, spanning deletions; standard calling confidence //No variants outside requested intervals; no SNPs with QUAL < 60, no INDELs with QUAL < 69?; has star alleles after deletion at chr20:263497; has AC, AF, AN, DP, ExcessHet, FS, MQ, (MQRankSum), (ReadPosRankSum), SOR, QD; has called genotypes {new File[]{getTestFile("sample1.vcf"), getTestFile("sample2.vcf"), getTestFile("sample3.vcf"), getTestFile("sample4.vcf"), getTestFile("sample5.vcf")}, getTestFile("fiveSampleTest.vcf"), null, Arrays.asList(new SimpleInterval("chr20", 251370, 252000), new SimpleInterval("chr20", 263000, 265600)), Arrays.asList("--merge-input-intervals", "--only-output-calls-starting-in-intervals"), b38_reference_20_21}, @@ -217,4 +223,26 @@ public void testOnEmptyAnnotations() { Assert.assertEquals(sors.get(1), VCFConstants.MISSING_VALUE_v4); } + @Test + public void testHaploidInput() { + final File haploidGVCF = new File(getToolTestDataDir(), "chrY_haploid_dragen.g.vcf"); + final File output = createTempFile("GnarlyGenotyper", ".vcf"); + final ArgumentsBuilder args = new ArgumentsBuilder(); + args.addReference(new File(hg38Reference)) + .add("V", haploidGVCF) + .addOutput(output) + .add(StandardArgumentDefinitions.ADD_OUTPUT_VCF_COMMANDLINE, "false"); + runCommandLine(args); + + final Pair> outputData = VariantContextTestUtils.readEntireVCFIntoMemory(output.getAbsolutePath()); + Assert.assertEquals(outputData.getRight().size(), 1); + final VariantContext vc = outputData.getRight().get(0); + Assert.assertEquals(vc.getGenotypes().size(), 1); + final Genotype g = vc.getGenotype(0); + Assert.assertEquals(g.getPloidy(), 1); + Assert.assertEquals(g.getAlleles().get(0), Allele.ALT_A); + Assert.assertTrue(g.hasPL()); + Assert.assertEquals(g.getPL().length, 2); + Assert.assertEquals(g.getPL(), new int[]{83,0}); + } } \ No newline at end of file diff --git a/src/test/java/org/broadinstitute/hellbender/tools/walkers/gnarlyGenotyper/GnarlyGenotyperEngineUnitTest.java b/src/test/java/org/broadinstitute/hellbender/tools/walkers/gnarlyGenotyper/GnarlyGenotyperEngineUnitTest.java index 1428e606c77..c84a9d1a76f 100644 --- a/src/test/java/org/broadinstitute/hellbender/tools/walkers/gnarlyGenotyper/GnarlyGenotyperEngineUnitTest.java +++ b/src/test/java/org/broadinstitute/hellbender/tools/walkers/gnarlyGenotyper/GnarlyGenotyperEngineUnitTest.java @@ -61,19 +61,19 @@ public void testLotsOfAlts() { //use more alts than the maxAltAllelesToOutput for the engine, forcing on-the-fly generation of GLCalculator not in the cache @Test public void testGenotypeCallForLotsOfAlts() { - final GnarlyGenotyperEngine engine = new GnarlyGenotyperEngine(false, 4, false, true); + final GnarlyGenotyperEngine engine = new GnarlyGenotyperEngine(false, 4, true); final Genotype g1 = VariantContextTestUtils.makeG("g1", oneInserted, twoInserted, sample1pls); final Genotype g2 = VariantContextTestUtils.makeG("g1", Aref, oneInserted, sample2pls); final VariantContext vc = VariantContextTestUtils.makeVC("test", Arrays.asList(Aref, oneInserted, twoInserted, threeInserted, fourRepeats, fiveRepeats), g1, g2); final GenotypeBuilder builder1 = new GenotypeBuilder(g1); - engine.makeGenotypeCall(builder1, GenotypeLikelihoods.fromPLs(sample1pls).getAsVector(), Arrays.asList(Aref, oneInserted, twoInserted, threeInserted, fourRepeats, fiveRepeats)); + engine.makeGenotypeCall(g1, builder1, GenotypeLikelihoods.fromPLs(sample1pls).getAsVector(), Arrays.asList(Aref, oneInserted, twoInserted, threeInserted, fourRepeats, fiveRepeats)); final List calledAlleles1 = builder1.make().getAlleles(); Assert.assertTrue(calledAlleles1.size() == 2 && calledAlleles1.contains(oneInserted) && calledAlleles1.contains(twoInserted)); final GenotypeBuilder builder2 = new GenotypeBuilder(g2); - engine.makeGenotypeCall(builder2, GenotypeLikelihoods.fromPLs(sample2pls).getAsVector(), Arrays.asList(Aref, oneInserted, twoInserted, threeInserted, fourRepeats, fiveRepeats)); + engine.makeGenotypeCall(g2, builder2, GenotypeLikelihoods.fromPLs(sample2pls).getAsVector(), Arrays.asList(Aref, oneInserted, twoInserted, threeInserted, fourRepeats, fiveRepeats)); final List calledAlleles2 = builder2.make().getAlleles(); Assert.assertTrue(calledAlleles2.size() == 2 && calledAlleles2.contains(Aref) && calledAlleles2.contains(oneInserted)); } diff --git a/src/test/java/org/broadinstitute/hellbender/tools/walkers/variantutils/ReblockGVCFIntegrationTest.java b/src/test/java/org/broadinstitute/hellbender/tools/walkers/variantutils/ReblockGVCFIntegrationTest.java index a0f5aee0275..4031a8c8750 100644 --- a/src/test/java/org/broadinstitute/hellbender/tools/walkers/variantutils/ReblockGVCFIntegrationTest.java +++ b/src/test/java/org/broadinstitute/hellbender/tools/walkers/variantutils/ReblockGVCFIntegrationTest.java @@ -339,6 +339,7 @@ public void testMultipleInputs() { } @Test(expectedExceptions = UserException.class) + //ReblockGVCF can take multiple inputs, but only if they're non-overlapping shards from the same sample public void testMixedSamples() { final File output = createTempFile("reblockedgvcf", ".vcf"); final ArgumentsBuilder args = new ArgumentsBuilder(); diff --git a/src/test/resources/org/broadinstitute/hellbender/tools/walkers/GnarlyGenotyper/NA12891.chrX.haploid.rb.g.vcf b/src/test/resources/org/broadinstitute/hellbender/tools/walkers/GnarlyGenotyper/NA12891.chrX.haploid.rb.g.vcf new file mode 100644 index 00000000000..a761a127456 --- /dev/null +++ b/src/test/resources/org/broadinstitute/hellbender/tools/walkers/GnarlyGenotyper/NA12891.chrX.haploid.rb.g.vcf @@ -0,0 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END=1006955 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1260 +chrX 1006956 . TTTTTTATTATTATTA T, 343.01 . AS_QUALapprox=|353|0;AS_VarDP=25|32|0;BaseQRankSum=-1.070;DP=63;MQRankSum=1.618;QUALapprox=353;RAW_GT_COUNT=0,0,1;RAW_MQandDP=224800,63;ReadPosRankSum=-0.264;VarDP=57 GT:AD:DP:GQ:PL:SB 1:25,32,0:57:99:353,0,1152:8,5,19,13 +chrX 1006972 . T . . END=1006979 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1752 +chrX 1006980 . A T, 433.04 . AS_QUALapprox=|443|0;AS_VarDP=22|32|0;BaseQRankSum=-1.684;DP=56;MQRankSum=1.244;QUALapprox=443;RAW_GT_COUNT=0,0,1;RAW_MQandDP=199600,56;ReadPosRankSum=0.009;VarDP=54 GT:AD:DP:GQ:PL:SB 1:22,32,0:54:99:443,0,1370:10,12,19,13 +chrX 1006981 . T . . END=1007008 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1522 +chrX 1007009 . T C, 511.04 . AS_QUALapprox=|521|0;AS_VarDP=25|36|0;BaseQRankSum=-1.458;DP=64;MQRankSum=1.735;QUALapprox=521;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226400,64;ReadPosRankSum=-0.606;VarDP=61 GT:AD:DP:GQ:PL:SB 1:25,36,0:61:99:521,0,1500:16,9,23,13 +chrX 1007010 . G . . END=1007017 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1731 +chrX 1007018 . A G, 2259.04 . AS_QUALapprox=|2269|0;AS_VarDP=0|60|0;DP=63;QUALapprox=2269;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:2269,0,2269:0,0,37,23 +chrX 1007019 . C . . END=1007080 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1800 +chrX 1007081 . A G, 313.04 . AS_QUALapprox=|323|0;AS_VarDP=27|38|0;BaseQRankSum=-2.137;DP=67;MQRankSum=1.218;QUALapprox=323;RAW_GT_COUNT=0,0,1;RAW_MQandDP=240625,67;ReadPosRankSum=0.653;VarDP=65 GT:AD:DP:GQ:PL:SB 1:27,38,0:65:99:323,0,1260:14,13,18,20 +chrX 1007082 . G . . END=1007423 GT:DP:GQ:MIN_DP:PL 0:63:61:63:0,61 +chrX 1007424 . C T, 1885.04 . AS_QUALapprox=|1895|0;AS_VarDP=0|59|0;DP=60;QUALapprox=1895;RAW_GT_COUNT=0,0,1;RAW_MQandDP=215425,60;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:1895,0,1895:0,0,35,24 +chrX 1007425 . A . . END=1007488 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1800 +chrX 1007489 . G T, 278.04 . AS_QUALapprox=|288|0;AS_VarDP=27|36|0;BaseQRankSum=0.282;DP=67;MQRankSum=1.187;QUALapprox=288;RAW_GT_COUNT=0,0,1;RAW_MQandDP=240389,67;ReadPosRankSum=0.465;VarDP=63 GT:AD:DP:GQ:PL:SB 1:27,36,0:63:99:288,0,1156:13,14,16,20 +chrX 1007490 . G . . END=1007654 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1706 +chrX 1007655 . C T, 2606.04 . AS_QUALapprox=|2616|0;AS_VarDP=0|60|0;DP=65;QUALapprox=2616;RAW_GT_COUNT=0,0,1;RAW_MQandDP=232704,65;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:2616,0,2616:0,0,25,35 +chrX 1007656 . C . . END=1007667 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1726 +chrX 1007668 . G A, 2517.04 . AS_QUALapprox=|2527|0;AS_VarDP=0|58|0;DP=59;QUALapprox=2527;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,58,0:58:99:2527,0,2527:0,0,26,32 +chrX 1007669 . G . . END=1007714 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1800 +chrX 1007715 . G A, 81.04 . AS_QUALapprox=|91|0;AS_VarDP=32|34|0;BaseQRankSum=0.090;DP=69;MQRankSum=0.000;QUALapprox=91;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;ReadPosRankSum=2.387;VarDP=66 GT:AD:DP:GQ:PL:SB 1:32,34,0:66:91:91,0,1152:14,18,11,23 +chrX 1007716 . G . . END=1007786 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1800 +chrX 1007787 . T C, 552.04 . AS_QUALapprox=|562|0;AS_VarDP=25|40|0;BaseQRankSum=2.222;DP=67;MQRankSum=0.000;QUALapprox=562;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;ReadPosRankSum=-0.809;VarDP=65 GT:AD:DP:GQ:PL:SB 1:25,40,0:65:99:562,0,1359:13,12,19,21 +chrX 1007788 . T . . END=1007800 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1800 +chrX 1007801 . A G, 2467.04 . AS_QUALapprox=|2477|0;AS_VarDP=0|65|0;DP=68;QUALapprox=2477;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,65,0:65:99:2477,0,2477:0,0,36,29 +chrX 1007802 . G . . END=1007875 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,198 +chrX 1007876 . T C, 155.04 . AS_QUALapprox=|165|0;AS_VarDP=22|26|0;BaseQRankSum=0.336;DP=53;MQRankSum=0.000;QUALapprox=165;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;ReadPosRankSum=0.952;VarDP=48 GT:AD:DP:GQ:PL:SB 1:22,26,0:48:99:165,0,1139:10,12,15,11 +chrX 1007877 . CTT C, 155.01 . AS_QUALapprox=|165|0;AS_VarDP=22|26|0;BaseQRankSum=-0.762;DP=54;MQRankSum=0.000;QUALapprox=165;RAW_GT_COUNT=0,0,1;RAW_MQandDP=192321,54;ReadPosRankSum=1.014;VarDP=48 GT:AD:DP:GQ:PL:SB 1:22,26,0:48:99:165,0,1139:10,12,15,11 +chrX 1007880 . T . . END=1007892 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,1587 +chrX 1007893 . T . . END=1007893 GT:DP:GQ:MIN_DP:PL 0:58:4:58:0,4 +chrX 1007894 . T . . END=1007945 GT:DP:GQ:MIN_DP:PL 0:44:68:44:0,68 +chrX 1007946 . G A, 84.04 . AS_QUALapprox=|94|0;AS_VarDP=17|20|0;BaseQRankSum=-0.419;DP=39;MQRankSum=-0.868;QUALapprox=94;RAW_GT_COUNT=0,0,1;RAW_MQandDP=137746,39;ReadPosRankSum=0.518;VarDP=37 GT:AD:DP:GQ:PL:SB 1:17,20,0:37:94:94,0,675:6,11,8,12 +chrX 1007947 . G . . END=1008066 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,110 +chrX 1008067 . G A, 244.04 . AS_QUALapprox=|254|0;AS_VarDP=24|31|0;BaseQRankSum=1.177;DP=56;MQRankSum=0.841;QUALapprox=254;RAW_GT_COUNT=0,0,1;RAW_MQandDP=199875,56;ReadPosRankSum=0.479;VarDP=55 GT:AD:DP:GQ:PL:SB 1:24,31,0:55:99:254,0,1323:13,11,15,16 +chrX 1008068 . G . . END=1008074 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1598 +chrX 1008075 . C T, 150.04 . AS_QUALapprox=|160|0;AS_VarDP=25|29|0;BaseQRankSum=-0.418;DP=57;MQRankSum=0.743;QUALapprox=160;RAW_GT_COUNT=0,0,1;RAW_MQandDP=203475,57;ReadPosRankSum=0.980;VarDP=54 GT:AD:DP:GQ:PL:SB 1:25,29,0:54:99:160,0,1254:13,12,15,14 +chrX 1008076 . C . . END=1008119 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1628 +chrX 1008120 . A G, 1642.04 . AS_QUALapprox=|1652|0;AS_VarDP=0|52|0;DP=53;QUALapprox=1652;RAW_GT_COUNT=0,0,1;RAW_MQandDP=189650,53;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:1652,0,1652:0,0,29,23 +chrX 1008121 . C . . END=1008156 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,1574 +chrX 1008157 . G A, 1822.04 . AS_QUALapprox=|1832|0;AS_VarDP=0|55|0;DP=57;QUALapprox=1832;RAW_GT_COUNT=0,0,1;RAW_MQandDP=204050,57;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:1832,0,1832:0,0,31,24 +chrX 1008158 . T . . END=1008168 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,1747 +chrX 1008169 . G T, 1638.04 . AS_QUALapprox=|1648|0;AS_VarDP=2|51|0;BaseQRankSum=3.526;DP=54;MQRankSum=-0.212;QUALapprox=1648;RAW_GT_COUNT=0,0,1;RAW_MQandDP=193250,54;ReadPosRankSum=1.541;VarDP=53 GT:AD:DP:GQ:PL:SB 1:2,51,0:53:99:1648,0,1682:1,1,29,22 +chrX 1008170 . C . . END=1008652 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1693 +chrX 1008653 . C T, 199.04 . AS_QUALapprox=|209|0;AS_VarDP=26|32|0;BaseQRankSum=0.369;DP=60;MQRankSum=0.000;QUALapprox=209;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;ReadPosRankSum=-1.439;VarDP=58 GT:AD:DP:GQ:PL:SB 1:26,32,0:58:99:209,0,1047:14,12,18,14 +chrX 1008654 . G . . END=1009310 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1577 +chrX 1009311 . C T, 2447.04 . AS_QUALapprox=|2457|0;AS_VarDP=0|74|0;DP=75;QUALapprox=2457;RAW_GT_COUNT=0,0,1;RAW_MQandDP=270000,75;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,74,0:74:99:2457,0,2457:0,0,35,39 +chrX 1009312 . G . . END=1010107 GT:DP:GQ:MIN_DP:PL 0:79:99:79:0,605 +chrX 1010108 . A G, 1681.04 . AS_QUALapprox=|1691|0;AS_VarDP=0|52|0;DP=54;QUALapprox=1691;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:1691,0,1691:0,0,19,33 +chrX 1010109 . G . . END=1010886 GT:DP:GQ:MIN_DP:PL 0:46:41:34:0,41 +chrX 1010887 . C G, 40.04 . AS_QUALapprox=|50|0;AS_VarDP=21|21|0;BaseQRankSum=1.606;DP=43;MQRankSum=0.000;QUALapprox=50;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154800,43;ReadPosRankSum=0.050;VarDP=42 GT:AD:DP:GQ:PL:SB 1:21,21,0:42:50:50,0,680:9,12,12,9 +chrX 1010888 . G . . END=1011075 GT:DP:GQ:MIN_DP:PL 0:54:21:52:0,21 +chrX 1011076 . G . . END=1011076 GT:DP:GQ:MIN_DP:PL 0:51:0:51:0,0 +chrX 1011077 . T . . END=1011340 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,114 +chrX 1011341 . C T, 515.04 . AS_QUALapprox=|525|0;AS_VarDP=20|32|0;BaseQRankSum=-2.142;DP=56;MQRankSum=1.393;QUALapprox=525;RAW_GT_COUNT=0,0,1;RAW_MQandDP=182028,56;ReadPosRankSum=-2.023;VarDP=52 GT:AD:DP:GQ:PL:SB 1:20,32,0:52:99:525,0,1425:13,7,16,16 +chrX 1011342 . G . . END=1011344 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,1597 +chrX 1011345 . C T, 484.04 . AS_QUALapprox=|494|0;AS_VarDP=20|31|0;BaseQRankSum=-2.848;DP=57;MQRankSum=1.341;QUALapprox=494;RAW_GT_COUNT=0,0,1;RAW_MQandDP=185277,57;ReadPosRankSum=-1.882;VarDP=51 GT:AD:DP:GQ:PL:SB 1:20,31,0:51:99:494,0,1394:13,7,15,16 +chrX 1011346 . G . . END=1011617 GT:DP:GQ:MIN_DP:PL 0:50:26:38:0,26 +chrX 1011618 . T C, 229.04 . AS_QUALapprox=|239|0;AS_VarDP=33|39|0;BaseQRankSum=0.162;DP=73;MQRankSum=-0.826;QUALapprox=239;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259537,73;ReadPosRankSum=-0.514;VarDP=72 GT:AD:DP:GQ:PL:SB 1:33,39,0:72:99:239,0,1200:13,20,16,23 +chrX 1011619 . A . . END=1011657 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1800 +chrX 1011658 . GA G,AA, 272.01 . AS_QUALapprox=|282|0|0;AS_VarDP=26|37|1|0;BaseQRankSum=-2.286;DP=80;MQRankSum=-1.437;QUALapprox=282;RAW_GT_COUNT=0,0,1;RAW_MQandDP=283460,80;ReadPosRankSum=-0.157;VarDP=64 GT:AD:DP:GQ:PL:SB 1:26,37,1,0:64:99:282,0,2006,1571:9,17,13,25 +chrX 1011660 . A . . END=1012151 GT:DP:GQ:MIN_DP:PL 0:71:65:71:0,65 +chrX 1012152 . G A, 139.04 . AS_QUALapprox=|149|0;AS_VarDP=35|39|0;BaseQRankSum=-0.296;DP=75;MQRankSum=0.000;QUALapprox=149;RAW_GT_COUNT=0,0,1;RAW_MQandDP=270000,75;ReadPosRankSum=-0.330;VarDP=74 GT:AD:DP:GQ:PL:SB 1:35,39,0:74:99:149,0,1286:18,17,23,16 +chrX 1012153 . T . . END=1012195 GT:DP:GQ:MIN_DP:PL 0:66:24:64:0,24 +chrX 1012196 . A . . END=1012199 GT:DP:GQ:MIN_DP:PL 0:70:0:70:0,0 +chrX 1012200 . A . . END=1012441 GT:DP:GQ:MIN_DP:PL 0:76:99:76:0,317 +chrX 1012442 . G . . END=1012442 GT:DP:GQ:MIN_DP:PL 0:62:1:62:0,1 +chrX 1012443 . T . . END=1012547 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,680 +chrX 1012548 . A AGTATTAATATTAAATATTACTGGATATTTAAG,ATTATTAATATTAAATATTACTGGATATTTAATTATTAATATTAAATATTACTGGATATTTAATTATTAATATTAAATATTACTGGATATTTAAGTATTAATATTAAATATTACTGGATATTTAAG, 652.98 . AS_QUALapprox=|663|656|0;AS_VarDP=0|0|0|0;DP=77;QUALapprox=663;RAW_GT_COUNT=0,0,1;RAW_MQandDP=271891,77;VarDP=31 GT:AD:DP:GQ:PL:SB 1:31,0,0,0:31:7:663,0,7,1033:14,17,0,0 +chrX 1012549 . T . . END=1012572 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1800 +chrX 1012573 . G A, 75.04 . AS_QUALapprox=|85|0;AS_VarDP=32|35|0;BaseQRankSum=0.076;DP=68;MQRankSum=0.000;QUALapprox=85;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;ReadPosRankSum=0.395;VarDP=67 GT:AD:DP:GQ:PL:SB 1:32,35,0:67:85:85,0,1483:13,19,15,20 +chrX 1012574 . T . . END=1012646 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1678 +chrX 1012647 . AT A, 0.02 . AS_QUALapprox=|3|0;AS_VarDP=30|30|0;BaseQRankSum=0.758;DP=63;MQRankSum=0.000;QUALapprox=3;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;ReadPosRankSum=-0.948;VarDP=60 GT:AD:DP:GQ:PL:SB 1:30,30,0:60:3:3,0,1068:16,14,15,15 +chrX 1012649 . T . . END=1012876 GT:DP:GQ:MIN_DP:PL 0:69:79:69:0,79 +chrX 1012877 . C A, 135.04 . AS_QUALapprox=|145|0;AS_VarDP=24|27|0;BaseQRankSum=-0.900;DP=55;MQRankSum=0.000;QUALapprox=145;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;ReadPosRankSum=-0.271;VarDP=51 GT:AD:DP:GQ:PL:SB 1:24,27,0:51:99:145,0,1184:12,12,16,11 +chrX 1012878 . A . . END=1012888 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1712 +chrX 1012889 . A T, 65.04 . AS_QUALapprox=|75|0;AS_VarDP=27|28|0;BaseQRankSum=-0.502;DP=56;MQRankSum=0.000;QUALapprox=75;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;ReadPosRankSum=0.017;VarDP=55 GT:AD:DP:GQ:PL:SB 1:27,28,0:55:75:75,0,1218:16,11,17,11 +chrX 1012890 . G . . END=1012977 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1519 +chrX 1012978 . C CT, 615.01 . AS_QUALapprox=|625|0;AS_VarDP=22|36|0;BaseQRankSum=0.197;DP=59;MQRankSum=0.000;QUALapprox=625;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;ReadPosRankSum=-0.080;VarDP=58 GT:AD:DP:GQ:PL:SB 1:22,36,0:58:99:625,0,1615:17,5,21,15 +chrX 1012979 . C . . END=1012979 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1800 +chrX 1012980 . T C, 615.04 . AS_QUALapprox=|625|0;AS_VarDP=22|36|0;BaseQRankSum=0.447;DP=61;MQRankSum=0.000;QUALapprox=625;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;ReadPosRankSum=0.016;VarDP=58 GT:AD:DP:GQ:PL:SB 1:22,36,0:58:99:625,0,1615:17,5,21,15 +chrX 1012981 . C . . END=1013042 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1800 +chrX 1013043 . G T, 268.04 . AS_QUALapprox=|278|0;AS_VarDP=30|41|0;BaseQRankSum=-2.188;DP=72;MQRankSum=0.000;QUALapprox=278;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;ReadPosRankSum=0.175;VarDP=71 GT:AD:DP:GQ:PL:SB 1:30,41,0:71:99:278,0,1278:16,14,17,24 +chrX 1013044 . T . . END=1013129 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1800 +chrX 1013130 . C T, 14.03 . AS_QUALapprox=|24|0;AS_VarDP=34|36|0;BaseQRankSum=-0.708;DP=74;MQRankSum=0.000;QUALapprox=24;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;ReadPosRankSum=1.370;VarDP=70 GT:AD:DP:GQ:PL:SB 1:34,36,0:70:24:24,0,1126:14,20,15,21 +chrX 1013131 . G . . END=1013286 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1620 +chrX 1013287 . C T, 72.04 . AS_QUALapprox=|82|0;AS_VarDP=40|38|0;BaseQRankSum=2.519;DP=78;MQRankSum=0.942;QUALapprox=82;RAW_GT_COUNT=0,0,1;RAW_MQandDP=275791,78;ReadPosRankSum=-0.065;VarDP=78 GT:AD:DP:GQ:PL:SB 1:40,38,0:78:82:82,0,1200:17,23,24,14 +chrX 1013288 . G . . END=1013431 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1770 +chrX 1013432 . G A, 266.04 . AS_QUALapprox=|276|0;AS_VarDP=25|30|0;BaseQRankSum=-0.109;DP=56;MQRankSum=-0.408;QUALapprox=276;RAW_GT_COUNT=0,0,1;RAW_MQandDP=193530,56;ReadPosRankSum=0.516;VarDP=55 GT:AD:DP:GQ:PL:SB 1:25,30,0:55:99:276,0,1350:15,10,9,21 +chrX 1013433 . C . . END=1013441 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1732 +chrX 1013442 . A G, 395.04 . AS_QUALapprox=|405|0;AS_VarDP=23|32|0;BaseQRankSum=1.387;DP=56;MQRankSum=-1.474;QUALapprox=405;RAW_GT_COUNT=0,0,1;RAW_MQandDP=195525,56;ReadPosRankSum=-0.018;VarDP=55 GT:AD:DP:GQ:PL:SB 1:23,32,0:55:99:405,0,1440:14,9,9,23 +chrX 1013443 . G . . END=1013451 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1800 +chrX 1013452 . G A, 395.04 . AS_QUALapprox=|405|0;AS_VarDP=23|32|0;BaseQRankSum=-1.046;DP=56;MQRankSum=-1.474;QUALapprox=405;RAW_GT_COUNT=0,0,1;RAW_MQandDP=195525,56;ReadPosRankSum=0.572;VarDP=55 GT:AD:DP:GQ:PL:SB 1:23,32,0:55:99:405,0,1440:13,10,9,23 +chrX 1013453 . G . . END=1013463 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1694 +chrX 1013464 . C T, 530.04 . AS_QUALapprox=|540|0;AS_VarDP=21|33|0;BaseQRankSum=0.978;DP=55;MQRankSum=-1.386;QUALapprox=540;RAW_GT_COUNT=0,0,1;RAW_MQandDP=191925,55;ReadPosRankSum=0.793;VarDP=54 GT:AD:DP:GQ:PL:SB 1:21,33,0:54:99:540,0,1485:13,8,7,26 +chrX 1013465 . T C, 530.04 . AS_QUALapprox=|540|0;AS_VarDP=21|33|0;BaseQRankSum=-1.320;DP=55;MQRankSum=-1.386;QUALapprox=540;RAW_GT_COUNT=0,0,1;RAW_MQandDP=191925,55;ReadPosRankSum=0.821;VarDP=54 GT:AD:DP:GQ:PL:SB 1:21,33,0:54:99:540,0,1485:13,8,7,26 +chrX 1013466 . G . . END=1013494 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,1449 +chrX 1013495 . T C, 350.04 . AS_QUALapprox=|360|0;AS_VarDP=22|30|0;BaseQRankSum=-1.394;DP=52;MQRankSum=-1.195;QUALapprox=360;RAW_GT_COUNT=0,0,1;RAW_MQandDP=185300,52;ReadPosRankSum=0.305;VarDP=52 GT:AD:DP:GQ:PL:SB 1:22,30,0:52:99:360,0,1350:13,9,7,23 +chrX 1013496 . G . . END=1013510 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,1543 +chrX 1013511 . T C, 105.04 . AS_QUALapprox=|115|0;AS_VarDP=25|28|0;BaseQRankSum=0.573;DP=55;MQRankSum=-0.467;QUALapprox=115;RAW_GT_COUNT=0,0,1;RAW_MQandDP=195416,55;ReadPosRankSum=1.059;VarDP=53 GT:AD:DP:GQ:PL:SB 1:25,28,0:53:99:115,0,1240:13,12,8,20 +chrX 1013512 . G . . END=1013537 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,1539 +chrX 1013538 . T C, 21.04 . AS_QUALapprox=|31|0;AS_VarDP=25|25|0;BaseQRankSum=0.701;DP=53;MQRankSum=-0.566;QUALapprox=31;RAW_GT_COUNT=0,0,1;RAW_MQandDP=188216,53;ReadPosRankSum=-0.476;VarDP=50 GT:AD:DP:GQ:PL:SB 1:25,25,0:50:31:31,0,1074:13,12,9,16 +chrX 1013539 . G . . END=1013731 GT:DP:GQ:MIN_DP:PL 0:69:64:59:0,64 +chrX 1013732 . G A, 166.04 . AS_QUALapprox=|176|0;AS_VarDP=29|37|0;BaseQRankSum=-1.794;DP=68;MQRankSum=0.774;QUALapprox=176;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237917,68;ReadPosRankSum=-0.510;VarDP=66 GT:AD:DP:GQ:PL:SB 1:29,37,0:66:99:176,0,1149:17,12,25,12 +chrX 1013733 . A . . END=1014503 GT:DP:GQ:MIN_DP:PL 0:64:27:60:0,27 +chrX 1014504 . C G, 117.04 . AS_QUALapprox=|127|0;AS_VarDP=30|32|0;BaseQRankSum=1.636;DP=64;MQRankSum=0.000;QUALapprox=127;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;ReadPosRankSum=0.162;VarDP=62 GT:AD:DP:GQ:PL:SB 1:30,32,0:62:99:127,0,1092:17,13,14,18 +chrX 1014505 . C . . END=1014852 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,178 +chrX 1014853 . C . . END=1014853 GT:DP:GQ:MIN_DP:PL 0:55:4:55:0,4 +chrX 1014854 . C . . END=1015096 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1176 +chrX 1015097 . G A, 161.04 . AS_QUALapprox=|171|0;AS_VarDP=19|21|0;BaseQRankSum=1.832;DP=44;MQRankSum=1.101;QUALapprox=171;RAW_GT_COUNT=0,0,1;RAW_MQandDP=157716,44;ReadPosRankSum=-1.179;VarDP=40 GT:AD:DP:GQ:PL:SB 1:19,21,0:40:99:171,0,690:12,7,11,10 +chrX 1015098 . G . . END=1015201 GT:DP:GQ:MIN_DP:PL 0:37:99:37:0,109 +chrX 1015202 . A G, 119.04 . AS_QUALapprox=|129|0;AS_VarDP=18|21|0;BaseQRankSum=0.653;DP=41;MQRankSum=1.584;QUALapprox=129;RAW_GT_COUNT=0,0,1;RAW_MQandDP=146341,41;ReadPosRankSum=-0.564;VarDP=39 GT:AD:DP:GQ:PL:SB 1:18,21,0:39:99:129,0,685:12,6,12,9 +chrX 1015203 . C . . END=1015235 GT:DP:GQ:MIN_DP:PL 0:38:99:38:0,1167 +chrX 1015236 . T C, 101.04 . AS_QUALapprox=|111|0;AS_VarDP=17|21|0;BaseQRankSum=-1.571;DP=46;MQRankSum=1.164;QUALapprox=111;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165025,46;ReadPosRankSum=0.073;VarDP=38 GT:AD:DP:GQ:PL:SB 1:17,21,0:38:99:111,0,699:11,6,11,10 +chrX 1015237 . G . . END=1015435 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,99 +chrX 1015436 . C . . END=1015436 GT:DP:GQ:MIN_DP:PL 0:63:4:63:0,4 +chrX 1015437 . T . . END=1015724 GT:DP:GQ:MIN_DP:PL 0:50:58:44:0,58 +chrX 1015725 . G A, 149.04 . AS_QUALapprox=|159|0;AS_VarDP=22|26|0;BaseQRankSum=1.042;DP=49;MQRankSum=0.000;QUALapprox=159;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;ReadPosRankSum=-0.083;VarDP=48 GT:AD:DP:GQ:PL:SB 1:22,26,0:48:99:159,0,874:11,11,16,10 +chrX 1015726 . T . . END=1015849 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1598 +chrX 1015850 . G A, 1915.04 . AS_QUALapprox=|1925|0;AS_VarDP=0|59|0;DP=60;QUALapprox=1925;RAW_GT_COUNT=0,0,1;RAW_MQandDP=215881,60;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:1925,0,1925:0,0,27,32 +chrX 1015851 . T . . END=1016070 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,465 +chrX 1016071 . C T, 306.04 . AS_QUALapprox=|316|0;AS_VarDP=28|38|0;BaseQRankSum=-0.169;DP=68;MQRankSum=0.000;QUALapprox=316;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;ReadPosRankSum=0.286;VarDP=66 GT:AD:DP:GQ:PL:SB 1:28,38,0:66:99:316,0,1214:15,13,23,15 +chrX 1016072 . C . . END=1017812 GT:DP:GQ:MIN_DP:PL 0:53:39:50:0,39 +chrX 1017813 . G A, 25.04 . AS_QUALapprox=|35|0;AS_VarDP=20|21|0;BaseQRankSum=0.085;DP=46;MQRankSum=0.000;QUALapprox=35;RAW_GT_COUNT=0,0,1;RAW_MQandDP=160818,46;ReadPosRankSum=-0.117;VarDP=41 GT:AD:DP:GQ:PL:SB 1:20,21,0:41:35:35,0,700:9,11,4,17 +chrX 1017814 . C . . END=1017848 GT:DP:GQ:MIN_DP:PL 0:42:99:42:0,1260 +chrX 1017849 . A G, 75.04 . AS_QUALapprox=|85|0;AS_VarDP=20|21|0;BaseQRankSum=2.140;DP=46;MQRankSum=0.000;QUALapprox=85;RAW_GT_COUNT=0,0,1;RAW_MQandDP=160818,46;ReadPosRankSum=-0.013;VarDP=41 GT:AD:DP:GQ:PL:SB 1:20,21,0:41:85:85,0,720:11,9,7,14 +chrX 1017850 . A . . END=1017902 GT:DP:GQ:MIN_DP:PL 0:45:99:45:0,1305 +chrX 1017903 . A . . END=1017906 GT:DP:GQ:MIN_DP:PL 0:46:16:46:0,16 +chrX 1017907 . A . . END=1018391 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,1200 +chrX 1018392 . C A, 353.04 . AS_QUALapprox=|363|0;AS_VarDP=20|31|0;BaseQRankSum=1.011;DP=52;MQRankSum=0.000;QUALapprox=363;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;ReadPosRankSum=-0.029;VarDP=51 GT:AD:DP:GQ:PL:SB 1:20,31,0:51:99:363,0,997:8,12,18,13 +chrX 1018393 . G . . END=1019716 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,125 +chrX 1019717 . T C, 352.04 . AS_QUALapprox=|362|0;AS_VarDP=23|34|0;BaseQRankSum=0.012;DP=58;MQRankSum=-0.787;QUALapprox=362;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208225,58;ReadPosRankSum=1.123;VarDP=57 GT:AD:DP:GQ:PL:SB 1:23,34,0:57:99:362,0,1106:9,14,18,16 +chrX 1019718 . A . . END=1022136 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,332 +chrX 1022137 . C T, 2236.04 . AS_QUALapprox=|2246|0;AS_VarDP=1|70|0;BaseQRankSum=2.395;DP=73;MQRankSum=0.000;QUALapprox=2246;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;ReadPosRankSum=1.562;VarDP=71 GT:AD:DP:GQ:PL:SB 1:1,70,0:71:99:2246,0,2255:0,1,33,37 +chrX 1022138 . C . . END=1022191 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1800 +chrX 1022192 . C T, 2064.04 . AS_QUALapprox=|2074|0;AS_VarDP=0|64|0;DP=66;QUALapprox=2074;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,64,0:64:99:2074,0,2074:0,0,31,33 +chrX 1022193 . G . . END=1022435 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,134 +chrX 1022436 . T C, 1729.04 . AS_QUALapprox=|1739|0;AS_VarDP=0|54|0;DP=57;QUALapprox=1739;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=54 GT:AD:DP:GQ:PL:SB 1:0,54,0:54:99:1739,0,1739:0,0,29,25 +chrX 1022437 . C . . END=1022474 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1511 +chrX 1022475 . A G, 1706.04 . AS_QUALapprox=|1716|0;AS_VarDP=0|55|0;DP=57;QUALapprox=1716;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:1716,0,1716:0,0,30,25 +chrX 1022476 . T . . END=1022575 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1647 +chrX 1022576 . A G, 1997.04 . AS_QUALapprox=|2007|0;AS_VarDP=0|62|0;DP=64;QUALapprox=2007;RAW_GT_COUNT=0,0,1;RAW_MQandDP=229825,64;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:2007,0,2007:0,0,29,33 +chrX 1022577 . G . . END=1022598 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1800 +chrX 1022599 . T G, 2136.04 . AS_QUALapprox=|2146|0;AS_VarDP=0|69|0;DP=71;QUALapprox=2146;RAW_GT_COUNT=0,0,1;RAW_MQandDP=251715,71;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,69,0:69:99:2146,0,2146:0,0,33,36 +chrX 1022600 . A . . END=1022619 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1800 +chrX 1022620 . T C, 2351.04 . AS_QUALapprox=|2361|0;AS_VarDP=0|75|0;DP=77;QUALapprox=2361;RAW_GT_COUNT=0,0,1;RAW_MQandDP=273315,77;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,75,0:75:99:2361,0,2361:0,0,35,40 +chrX 1022621 . G . . END=1023082 GT:DP:GQ:MIN_DP:PL 0:73:99:73:0,1701 +chrX 1023083 . C T, 101.04 . AS_QUALapprox=|111|0;AS_VarDP=27|28|0;BaseQRankSum=1.908;DP=60;MQRankSum=0.000;QUALapprox=111;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;ReadPosRankSum=1.103;VarDP=55 GT:AD:DP:GQ:PL:SB 1:27,28,0:55:99:111,0,922:12,15,11,17 +chrX 1023084 . G . . END=1023425 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1646 +chrX 1023426 . TTTTATTTA T, 173.01 . AS_QUALapprox=|183|0;AS_VarDP=15|19|0;BaseQRankSum=1.417;DP=54;MQRankSum=0.000;QUALapprox=183;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;ReadPosRankSum=0.675;VarDP=34 GT:AD:DP:GQ:PL:SB 1:15,19,0:34:99:183,0,858:10,5,11,8 +chrX 1023435 . T . . END=1023717 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,160 +chrX 1023718 . A G, 133.04 . AS_QUALapprox=|143|0;AS_VarDP=36|43|0;BaseQRankSum=-2.313;DP=83;MQRankSum=0.000;QUALapprox=143;RAW_GT_COUNT=0,0,1;RAW_MQandDP=298800,83;ReadPosRankSum=-0.753;VarDP=79 GT:AD:DP:GQ:PL:SB 1:36,43,0:79:99:143,0,1349:14,22,15,28 +chrX 1023719 . A . . END=1024364 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1697 +chrX 1024365 . T C, 1786.04 . AS_QUALapprox=|1796|0;AS_VarDP=0|55|0;DP=57;QUALapprox=1796;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:1796,0,1796:0,0,32,23 +chrX 1024366 . T . . END=1024727 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1484 +chrX 1024728 . G A, 1493.04 . AS_QUALapprox=|1503|0;AS_VarDP=3|48|0;BaseQRankSum=1.360;DP=53;MQRankSum=1.116;QUALapprox=1503;RAW_GT_COUNT=0,0,1;RAW_MQandDP=137057,53;ReadPosRankSum=-0.621;VarDP=51 GT:AD:DP:GQ:PL:SB 1:3,48,0:51:99:1503,0,1573:2,1,28,20 +chrX 1024729 . G . . END=1024784 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1623 +chrX 1024785 . C T, 1771.04 . AS_QUALapprox=|1781|0;AS_VarDP=1|54|0;BaseQRankSum=-0.253;DP=58;MQRankSum=-1.469;QUALapprox=1781;RAW_GT_COUNT=0,0,1;RAW_MQandDP=125535,58;ReadPosRankSum=0.536;VarDP=55 GT:AD:DP:GQ:PL:SB 1:1,54,0:55:99:1781,0,1816:1,0,32,22 +chrX 1024786 . T . . END=1025126 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1490 +chrX 1025127 . A . . END=1025127 GT:DP:GQ:MIN_DP:PL 0:49:18:49:0,18 +chrX 1025128 . C . . END=1025381 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,609 +chrX 1025382 . T A, 1468.04 . AS_QUALapprox=|1478|0;AS_VarDP=0|46|0;DP=48;QUALapprox=1478;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172116,48;VarDP=46 GT:AD:DP:GQ:PL:SB 1:0,46,0:46:99:1478,0,1478:0,0,19,27 +chrX 1025383 . A . . END=1025682 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,158 +chrX 1025683 . G C, 1731.04 . AS_QUALapprox=|1741|0;AS_VarDP=0|54|0;DP=55;QUALapprox=1741;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=54 GT:AD:DP:GQ:PL:SB 1:0,54,0:54:99:1741,0,1741:0,0,29,25 +chrX 1025684 . T . . END=1025921 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1457 +chrX 1025922 . G T, 2208.04 . AS_QUALapprox=|2218|0;AS_VarDP=0|50|0;DP=50;QUALapprox=2218;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165143,50;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,50,0:50:99:2218,0,2218:0,0,25,25 +chrX 1025923 . G . . END=1025923 GT:DP:GQ:MIN_DP:PL 0:47:99:47:0,1543 +chrX 1025924 . C T, 2208.04 . AS_QUALapprox=|2218|0;AS_VarDP=0|50|0;DP=51;QUALapprox=2218;RAW_GT_COUNT=0,0,1;RAW_MQandDP=168743,51;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,50,0:50:99:2218,0,2218:0,0,25,25 +chrX 1025925 . G . . END=1025966 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,1448 +chrX 1025967 . A G, 268.04 . AS_QUALapprox=|278|0;AS_VarDP=24|33|0;BaseQRankSum=-0.184;DP=60;MQRankSum=-2.523;QUALapprox=278;RAW_GT_COUNT=0,0,1;RAW_MQandDP=199479,60;ReadPosRankSum=0.679;VarDP=57 GT:AD:DP:GQ:PL:SB 1:24,33,0:57:99:278,0,1072:7,17,14,19 +chrX 1025968 . C . . END=1026021 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1726 +chrX 1026022 . G A, 130.04 . AS_QUALapprox=|140|0;AS_VarDP=27|29|0;BaseQRankSum=1.687;DP=56;MQRankSum=-2.944;QUALapprox=140;RAW_GT_COUNT=0,0,1;RAW_MQandDP=184743,56;ReadPosRankSum=-1.353;VarDP=56 GT:AD:DP:GQ:PL:SB 1:27,29,0:56:99:140,0,988:7,20,10,19 +chrX 1026023 . G . . END=1026349 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,223 +chrX 1026350 . A G, 1954.04 . AS_QUALapprox=|1964|0;AS_VarDP=0|62|0;DP=65;QUALapprox=1964;RAW_GT_COUNT=0,0,1;RAW_MQandDP=228881,65;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:1964,0,1964:0,0,29,33 +chrX 1026351 . A . . END=1026708 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1722 +chrX 1026709 . G C, 1792.04 . AS_QUALapprox=|1802|0;AS_VarDP=0|53|0;DP=57;QUALapprox=1802;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=53 GT:AD:DP:GQ:PL:SB 1:0,53,0:53:99:1802,0,1802:0,0,29,24 +chrX 1026710 . T . . END=1027039 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,920 +chrX 1027040 . C T, 1697.04 . AS_QUALapprox=|1707|0;AS_VarDP=0|51|0;DP=53;QUALapprox=1707;RAW_GT_COUNT=0,0,1;RAW_MQandDP=189075,53;VarDP=51 GT:AD:DP:GQ:PL:SB 1:0,51,0:51:99:1707,0,1707:0,0,29,22 +chrX 1027041 . G . . END=1027237 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1697 +chrX 1027238 . A G, 2020.04 . AS_QUALapprox=|2030|0;AS_VarDP=0|62|0;DP=68;QUALapprox=2030;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244225,68;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:2030,0,2030:0,0,35,27 +chrX 1027239 . T . . END=1027659 GT:DP:GQ:MIN_DP:PL 0:64:44:64:0,44 +chrX 1027660 . C CTT, 493.01 . AS_QUALapprox=|618|0;AS_VarDP=0|15|0;DP=22;QUALapprox=618;RAW_GT_COUNT=0,0,1;RAW_MQandDP=76409,22;VarDP=15 GT:AD:DP:GQ:PL:SB 1:0,15,0:15:99:618,0,557:0,0,0,7 +chrX 1027661 . T . . END=1027661 GT:DP:GQ:MIN_DP:PL 0:18:88:18:0,88 +chrX 1027662 . C CTCT, 452.01 . AS_QUALapprox=|618|0;AS_VarDP=0|15|0;DP=19;QUALapprox=618;RAW_GT_COUNT=0,0,1;RAW_MQandDP=65609,19;VarDP=15 GT:AD:DP:GQ:PL:SB 1:0,15,0:15:99:618,0,534:0,0,0,7 +chrX 1027663 . T . . END=1027665 GT:DP:GQ:MIN_DP:PL 0:16:39:16:0,39 +chrX 1027666 . C . . END=1027666 GT:DP:GQ:MIN_DP:PL 0:15:15:15:0,15 +chrX 1027667 . T . . END=1027671 GT:DP:GQ:MIN_DP:PL 0:17:39:16:0,39 +chrX 1027672 . C T, 634.04 . AS_QUALapprox=|930|0;AS_VarDP=0|22|0;DP=22;QUALapprox=930;RAW_GT_COUNT=0,0,1;RAW_MQandDP=74273,22;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:930,0,780:0,0,2,12 +chrX 1027673 . T . . END=1027678 GT:DP:GQ:MIN_DP:PL 0:19:53:19:0,53 +chrX 1027679 . T TTCTC, 724.01 . AS_QUALapprox=|1020|0;AS_VarDP=0|24|0;DP=24;QUALapprox=1020;RAW_GT_COUNT=0,0,1;RAW_MQandDP=81473,24;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:1020,0,870:0,0,2,14 +chrX 1027680 . T . . END=1027700 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,158 +chrX 1027701 . T TTTCC, 1039.01 . AS_QUALapprox=|1335|0;AS_VarDP=0|31|0;DP=31;QUALapprox=1335;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104053,31;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1335,0,1185:0,0,4,19 +chrX 1027702 . T . . END=1027720 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,198 +chrX 1027721 . C T, 1174.04 . AS_QUALapprox=|1470|0;AS_VarDP=0|34|0;DP=34;QUALapprox=1470;RAW_GT_COUNT=0,0,1;RAW_MQandDP=114853,34;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1470,0,1320:0,0,4,22 +chrX 1027722 . C . . END=1027740 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,327 +chrX 1027741 . T TTC, 1444.01 . AS_QUALapprox=|1740|0;AS_VarDP=0|40|0;DP=40;QUALapprox=1740;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136453,40;VarDP=40 GT:AD:DP:GQ:PL:SB 1:0,40,0:40:99:1740,0,1590:0,0,6,26 +chrX 1027742 . T . . END=1027744 GT:DP:GQ:MIN_DP:PL 0:40:99:40:0,714 +chrX 1027745 . C CTTTTCTTCTTTCTCTT,CTTTTTTTCTTTCTCTT, 1391.01 . AS_QUALapprox=|1690|408|0;AS_VarDP=0|33|2|0;DP=42;QUALapprox=1690;RAW_GT_COUNT=0,0,1;RAW_MQandDP=143653,42;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,33,2,0:35:99:1690,0,1282,1468:0,0,6,26 +chrX 1027746 . T . . END=1027778 GT:DP:GQ:MIN_DP:PL 0:44:99:44:0,1216 +chrX 1027779 . T TTCTC, 1951.01 . AS_QUALapprox=|1961|0;AS_VarDP=0|46|0;DP=52;QUALapprox=1961;RAW_GT_COUNT=0,0,1;RAW_MQandDP=181653,52;VarDP=46 GT:AD:DP:GQ:PL:SB 1:0,46,0:46:99:1961,0,1961:0,0,17,29 +chrX 1027780 . T . . END=1027981 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,950 +chrX 1027982 . G C, 1413.04 . AS_QUALapprox=|1423|0;AS_VarDP=0|44|0;DP=51;QUALapprox=1423;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=44 GT:AD:DP:GQ:PL:SB 1:0,44,0:44:99:1423,0,1423:0,0,25,19 +chrX 1027983 . T . . END=1028200 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,1324 +chrX 1028201 . A G, 1880.04 . AS_QUALapprox=|1890|0;AS_VarDP=0|42|0;DP=45;QUALapprox=1890;RAW_GT_COUNT=0,0,1;RAW_MQandDP=160426,45;VarDP=42 GT:AD:DP:GQ:PL:SB 1:0,42,0:42:99:1890,0,1890:0,0,21,21 +chrX 1028202 . C . . END=1028202 GT:DP:GQ:MIN_DP:PL 0:41:99:41:0,1385 +chrX 1028203 . G C, 1880.04 . AS_QUALapprox=|1890|0;AS_VarDP=0|42|0;DP=42;QUALapprox=1890;RAW_GT_COUNT=0,0,1;RAW_MQandDP=149626,42;VarDP=42 GT:AD:DP:GQ:PL:SB 1:0,42,0:42:99:1890,0,1890:0,0,21,21 +chrX 1028204 . C . . END=1028204 GT:DP:GQ:MIN_DP:PL 0:42:99:42:0,1440 +chrX 1028205 . G A, 1880.04 . AS_QUALapprox=|1890|0;AS_VarDP=0|42|0;DP=42;QUALapprox=1890;RAW_GT_COUNT=0,0,1;RAW_MQandDP=149626,42;VarDP=42 GT:AD:DP:GQ:PL:SB 1:0,42,0:42:99:1890,0,1890:0,0,21,21 +chrX 1028206 . C . . END=1028648 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1459 +chrX 1028649 . G C, 2335.04 . AS_QUALapprox=|2345|0;AS_VarDP=0|72|0;DP=77;QUALapprox=2345;RAW_GT_COUNT=0,0,1;RAW_MQandDP=277200,77;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,72,0:72:99:2345,0,2345:0,0,31,41 +chrX 1028650 . A . . END=1029444 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1667 +chrX 1029445 . C G, 2246.04 . AS_QUALapprox=|2256|0;AS_VarDP=0|69|0;DP=71;QUALapprox=2256;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,69,0:69:99:2256,0,2256:0,0,35,34 +chrX 1029446 . G . . END=1029616 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1800 +chrX 1029617 . A G, 3148.04 . AS_QUALapprox=|3158|0;AS_VarDP=0|72|0;DP=73;QUALapprox=3158;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,72,0:72:99:3158,0,3158:0,0,38,34 +chrX 1029618 . C . . END=1029624 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1800 +chrX 1029625 . A G, 3133.04 . AS_QUALapprox=|3143|0;AS_VarDP=0|71|0;DP=72;QUALapprox=3143;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,71,0:71:99:3143,0,3143:0,0,38,33 +chrX 1029626 . G . . END=1029649 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1800 +chrX 1029650 . G A, 2446.04 . AS_QUALapprox=|2456|0;AS_VarDP=0|76|0;DP=79;QUALapprox=2456;RAW_GT_COUNT=0,0,1;RAW_MQandDP=284400,79;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,76,0:76:99:2456,0,2456:0,0,39,37 +chrX 1029651 . G . . END=1029805 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1790 +chrX 1029806 . T C, 1586.04 . AS_QUALapprox=|1596|0;AS_VarDP=0|53|0;DP=56;QUALapprox=1596;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=53 GT:AD:DP:GQ:PL:SB 1:0,53,0:53:99:1596,0,1596:0,0,24,29 +chrX 1029807 . G . . END=1029933 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1754 +chrX 1029934 . A AAC, 2411.01 . AS_QUALapprox=|2421|0;AS_VarDP=0|56|0;DP=61;QUALapprox=2421;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,56,0:56:99:2421,0,2421:0,0,24,32 +chrX 1029935 . A . . END=1030043 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1800 +chrX 1030044 . C T, 2015.04 . AS_QUALapprox=|2025|0;AS_VarDP=0|60|0;DP=63;QUALapprox=2025;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:2025,0,2025:0,0,36,24 +chrX 1030045 . G . . END=1030109 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1787 +chrX 1030110 . A T, 1807.04 . AS_QUALapprox=|1817|0;AS_VarDP=0|54|0;DP=57;QUALapprox=1817;RAW_GT_COUNT=0,0,1;RAW_MQandDP=204625,57;VarDP=54 GT:AD:DP:GQ:PL:SB 1:0,54,0:54:99:1817,0,1817:0,0,25,29 +chrX 1030111 . C . . END=1030168 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1658 +chrX 1030169 . G A, 1849.04 . AS_QUALapprox=|1859|0;AS_VarDP=0|56|0;DP=57;QUALapprox=1859;RAW_GT_COUNT=0,0,1;RAW_MQandDP=204625,57;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,56,0:56:99:1859,0,1859:0,0,26,30 +chrX 1030170 . C . . END=1030258 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1573 +chrX 1030259 . A G, 1613.04 . AS_QUALapprox=|1623|0;AS_VarDP=0|50|0;DP=50;QUALapprox=1623;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,50,0:50:99:1623,0,1623:0,0,16,34 +chrX 1030260 . T . . END=1030892 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,769 +chrX 1030893 . T C, 1826.04 . AS_QUALapprox=|1836|0;AS_VarDP=0|55|0;DP=67;QUALapprox=1836;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:1836,0,1836:0,0,27,28 +chrX 1030894 . T . . END=1030968 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1511 +chrX 1030969 . CAA C, 1758.01 . AS_QUALapprox=|1768|0;AS_VarDP=1|43|0;DP=64;MQRankSum=-0.109;QUALapprox=1768;RAW_GT_COUNT=0,0,1;RAW_MQandDP=227401,64;VarDP=44 GT:AD:DP:GQ:PL:SB 1:1,43,0:44:99:1768,0,1804:0,1,18,25 +chrX 1030972 . A . . END=1030980 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1609 +chrX 1030981 . A T, 1276.04 . AS_QUALapprox=|1286|0;AS_VarDP=6|48|0;BaseQRankSum=3.831;DP=61;MQRankSum=-0.794;QUALapprox=1286;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212583,61;ReadPosRankSum=-0.991;VarDP=54 GT:AD:DP:GQ:PL:SB 1:6,48,0:54:99:1286,0,1409:0,6,24,24 +chrX 1030982 . A . . END=1031032 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,1081 +chrX 1031033 . C A, 2173.04 . AS_QUALapprox=|2183|0;AS_VarDP=0|49|0;DP=55;QUALapprox=2183;RAW_GT_COUNT=0,0,1;RAW_MQandDP=184086,55;VarDP=49 GT:AD:DP:GQ:PL:SB 1:0,49,0:49:99:2183,0,2183:0,0,29,20 +chrX 1031034 . G . . END=1031037 GT:DP:GQ:MIN_DP:PL 0:46:99:46:0,1320 +chrX 1031038 . G GGAGAAAGAGA, 2104.01 . AS_QUALapprox=|2114|0;AS_VarDP=0|47|0;DP=53;QUALapprox=2114;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172886,53;VarDP=47 GT:AD:DP:GQ:PL:SB 1:0,47,0:47:99:2114,0,2114:0,0,30,17 +chrX 1031039 . A . . END=1031047 GT:DP:GQ:MIN_DP:PL 0:40:99:40:0,1048 +chrX 1031048 . A AAAT, 1880.01 . AS_QUALapprox=|1890|0;AS_VarDP=0|42|0;DP=47;QUALapprox=1890;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147286,47;VarDP=42 GT:AD:DP:GQ:PL:SB 1:0,42,0:42:99:1890,0,1890:0,0,28,14 +chrX 1031049 . G . . END=1031052 GT:DP:GQ:MIN_DP:PL 0:40:99:40:0,1180 +chrX 1031053 . G GAAAGA, 100.01 . AS_QUALapprox=|1835|0;AS_VarDP=0|41|0;DP=46;QUALapprox=1835;RAW_GT_COUNT=0,0,1;RAW_MQandDP=141686,46;VarDP=41 GT:AD:DP:GQ:PL:SB 1:0,41,0:41:99:1835,0,963:0,0,2,0 +chrX 1031054 . A . . END=1031057 GT:DP:GQ:MIN_DP:PL 0:40:99:40:0,1031 +chrX 1031058 . AG A, 71.01 . AS_QUALapprox=|81|0;AS_VarDP=0|2|0;DP=45;QUALapprox=81;RAW_GT_COUNT=0,0,1;RAW_MQandDP=138086,45;VarDP=2 GT:AD:DP:GQ:PL:SB 1:0,2,0:2:81:81,0,90:0,0,2,0 +chrX 1031060 . G . . END=1031063 GT:DP:GQ:MIN_DP:PL 0:47:0:47:0,0 +chrX 1031064 . A . . END=1031066 GT:DP:GQ:MIN_DP:PL 0:40:99:40:0,1161 +chrX 1031067 . AC A, 161.01 . AS_QUALapprox=|171|0;AS_VarDP=0|4|0;DP=47;QUALapprox=171;RAW_GT_COUNT=0,0,1;RAW_MQandDP=139286,47;VarDP=4 GT:AD:DP:GQ:PL:SB 1:0,4,0:4:99:171,0,180:0,0,4,0 +chrX 1031069 . A . . END=1031069 GT:DP:GQ:MIN_DP:PL 0:40:99:40:0,1350 +chrX 1031070 . G GGAA, 161.01 . AS_QUALapprox=|171|0;AS_VarDP=0|4|0;DP=46;QUALapprox=171;RAW_GT_COUNT=0,0,1;RAW_MQandDP=135686,46;VarDP=4 GT:AD:DP:GQ:PL:SB 1:0,4,0:4:99:171,0,180:0,0,4,0 +chrX 1031071 . A . . END=1031078 GT:DP:GQ:MIN_DP:PL 0:38:99:38:0,1120 +chrX 1031079 . G A, 162.04 . AS_QUALapprox=|172|0;AS_VarDP=0|4|0;DP=42;QUALapprox=172;RAW_GT_COUNT=0,0,1;RAW_MQandDP=119325,42;VarDP=4 GT:AD:DP:GQ:PL:SB 1:0,4,0:4:99:172,0,180:0,0,4,0 +chrX 1031080 . G . . END=1031083 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,1136 +chrX 1031084 . A G, 164.04 . AS_QUALapprox=|174|0;AS_VarDP=0|4|0;DP=41;QUALapprox=174;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115725,41;VarDP=4 GT:AD:DP:GQ:PL:SB 1:0,4,0:4:99:174,0,284:0,0,4,0 +chrX 1031085 . ATG *,A, 164.01 . AS_QUALapprox=|0|174|0;AS_VarDP=0|0|4|0;DP=41;QUALapprox=174;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115725,41;VarDP=4 GT:AD:DP:GQ:PL:SB 2:0,0,4,0:4:99:174,386,0,284:0,0,4,0 +chrX 1031088 . A . . END=1031101 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,630 +chrX 1031102 . G GA,GAA, 591.01 . AS_QUALapprox=|1259|1617|0;AS_VarDP=2|0|7|0;BaseQRankSum=1.383;DP=44;MQRankSum=-1.611;QUALapprox=1617;RAW_GT_COUNT=0,0,1;RAW_MQandDP=125264,44;ReadPosRankSum=1.383;VarDP=9 GT:AD:DP:GQ:PL:SB 2:2,0,7,0:9:99:1617,358,0,622:0,2,6,0 +chrX 1031103 . A . . END=1031109 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,360 +chrX 1031110 . A . . END=1031111 GT:DP:GQ:MIN_DP:PL 0:47:0:47:0,0 +chrX 1031112 . G . . END=1031156 GT:DP:GQ:MIN_DP:PL 0:65:65:65:0,65 +chrX 1031157 . G . . END=1031157 GT:DP:GQ:MIN_DP:PL 0:55:0:55:0,0 +chrX 1031158 . A . . END=1031171 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1245 +chrX 1031172 . GAGAAAGAAAGAAAGAAAGA G, 1198.01 . AS_QUALapprox=|1208|0;AS_VarDP=0|28|0;DP=33;QUALapprox=1208;RAW_GT_COUNT=0,0,1;RAW_MQandDP=116542,33;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:1208,0,1208:0,0,15,13 +chrX 1031192 . A . . END=1031437 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1224 +chrX 1031438 . A G, 2171.04 . AS_QUALapprox=|2181|0;AS_VarDP=0|69|0;DP=72;QUALapprox=2181;RAW_GT_COUNT=0,0,1;RAW_MQandDP=258052,72;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,69,0:69:99:2181,0,2181:0,0,27,42 +chrX 1031439 . G . . END=1031527 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1800 +chrX 1031528 . G GA, 1529.01 . AS_QUALapprox=|1539|0;AS_VarDP=0|55|0;DP=63;QUALapprox=1539;RAW_GT_COUNT=0,0,1;RAW_MQandDP=225652,63;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:1539,0,1539:0,0,29,26 +chrX 1031529 . A . . END=1032611 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1494 +chrX 1032612 . G A, 2551.04 . AS_QUALapprox=|2561|0;AS_VarDP=0|78|0;DP=81;QUALapprox=2561;RAW_GT_COUNT=0,0,1;RAW_MQandDP=291600,81;VarDP=78 GT:AD:DP:GQ:PL:SB 1:0,78,0:78:99:2561,0,2561:0,0,48,30 +chrX 1032613 . A . . END=1032899 GT:DP:GQ:MIN_DP:PL 0:75:99:75:0,1800 +chrX 1032900 . A G, 2788.04 . AS_QUALapprox=|2798|0;AS_VarDP=0|64|0;DP=67;QUALapprox=2798;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237514,67;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,64,0:64:99:2798,0,2798:0,0,24,40 +chrX 1032901 . G . . END=1032914 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1800 +chrX 1032915 . T G, 2891.04 . AS_QUALapprox=|2901|0;AS_VarDP=0|68|0;DP=69;QUALapprox=2901;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244714,69;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,68,0:68:99:2901,0,2901:0,0,27,41 +chrX 1032916 . G . . END=1032978 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1706 +chrX 1032979 . G C, 2573.04 . AS_QUALapprox=|2583|0;AS_VarDP=0|58|0;DP=59;QUALapprox=2583;RAW_GT_COUNT=0,0,1;RAW_MQandDP=209513,59;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,58,0:58:99:2583,0,2583:0,0,23,35 +chrX 1032980 . T . . END=1032983 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1792 +chrX 1032984 . A G, 2607.04 . AS_QUALapprox=|2617|0;AS_VarDP=0|59|0;DP=61;QUALapprox=2617;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216713,61;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:2617,0,2617:0,0,24,35 +chrX 1032985 . G . . END=1033024 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1648 +chrX 1033025 . A T, 1637.04 . AS_QUALapprox=|1647|0;AS_VarDP=1|52|0;BaseQRankSum=1.749;DP=60;MQRankSum=-0.163;QUALapprox=1647;RAW_GT_COUNT=0,0,1;RAW_MQandDP=213688,60;ReadPosRankSum=-1.537;VarDP=53 GT:AD:DP:GQ:PL:SB 1:1,52,0:53:99:1647,0,1672:0,1,16,36 +chrX 1033026 . G . . END=1033182 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1583 +chrX 1033183 . G A, 1663.04 . AS_QUALapprox=|1673|0;AS_VarDP=0|51|0;DP=52;QUALapprox=1673;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=51 GT:AD:DP:GQ:PL:SB 1:0,51,0:51:99:1673,0,1673:0,0,29,22 +chrX 1033184 . A . . END=1033300 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1731 +chrX 1033301 . C T, 1910.04 . AS_QUALapprox=|1920|0;AS_VarDP=0|60|0;DP=61;QUALapprox=1920;RAW_GT_COUNT=0,0,1;RAW_MQandDP=211043,61;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:1920,0,1920:0,0,39,21 +chrX 1033302 . G . . END=1033492 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1205 +chrX 1033493 . A G, 1366.04 . AS_QUALapprox=|1376|0;AS_VarDP=0|35|0;DP=36;QUALapprox=1376;RAW_GT_COUNT=0,0,1;RAW_MQandDP=117167,36;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,35,0:35:99:1376,0,1376:0,0,13,22 +chrX 1033494 . C . . END=1033517 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,898 +chrX 1033518 . T C, 1158.04 . AS_QUALapprox=|1168|0;AS_VarDP=0|28|0;DP=28;QUALapprox=1168;RAW_GT_COUNT=0,0,1;RAW_MQandDP=85075,28;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:1168,0,1168:0,0,13,15 +chrX 1033519 . G . . END=1033593 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,720 +chrX 1033594 . A G, 1194.04 . AS_QUALapprox=|1204|0;AS_VarDP=0|27|0;DP=27;QUALapprox=1204;RAW_GT_COUNT=0,0,1;RAW_MQandDP=43804,27;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:1204,0,1204:0,0,22,5 +chrX 1033595 . C . . END=1033601 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,829 +chrX 1033602 . C T, 1278.04 . AS_QUALapprox=|1288|0;AS_VarDP=0|30|0;DP=30;QUALapprox=1288;RAW_GT_COUNT=0,0,1;RAW_MQandDP=47287,30;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:1288,0,1288:0,0,24,6 +chrX 1033603 . G . . END=1033760 GT:DP:GQ:MIN_DP:PL 0:129:99:129:0,976 +chrX 1033761 . A G, 4919.04 . AS_QUALapprox=|4929|0;AS_VarDP=0|166|0;DP=173;QUALapprox=4929;RAW_GT_COUNT=0,0,1;RAW_MQandDP=577480,173;VarDP=166 GT:AD:DP:GQ:PL:SB 1:0,166,0:166:99:4929,0,4929:0,0,92,74 +chrX 1033762 . G . . END=1034004 GT:DP:GQ:MIN_DP:PL 0:131:99:131:0,362 +chrX 1034005 . A G, 1775.04 . AS_QUALapprox=|1785|0;AS_VarDP=6|57|0;BaseQRankSum=4.439;DP=72;MQRankSum=-0.539;QUALapprox=1785;RAW_GT_COUNT=0,0,1;RAW_MQandDP=253051,72;ReadPosRankSum=-0.388;VarDP=63 GT:AD:DP:GQ:PL:SB 1:6,57,0:63:99:1785,0,1967:5,1,24,33 +chrX 1034006 . G . . END=1034238 GT:DP:GQ:MIN_DP:PL 0:73:99:73:0,1800 +chrX 1034239 . T C, 2064.04 . AS_QUALapprox=|2074|0;AS_VarDP=2|66|0;BaseQRankSum=-0.733;DP=70;MQRankSum=0.000;QUALapprox=2074;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;ReadPosRankSum=-0.799;VarDP=68 GT:AD:DP:GQ:PL:SB 1:2,66,0:68:99:2074,0,2143:0,2,38,28 +chrX 1034240 . G . . END=1034343 GT:DP:GQ:MIN_DP:PL 0:74:99:74:0,1800 +chrX 1034344 . T A, 2719.04 . AS_QUALapprox=|2729|0;AS_VarDP=0|64|0;DP=65;QUALapprox=2729;RAW_GT_COUNT=0,0,1;RAW_MQandDP=233425,65;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,64,0:64:99:2729,0,2729:0,0,30,34 +chrX 1034345 . C . . END=1034358 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1800 +chrX 1034359 . T C, 2545.04 . AS_QUALapprox=|2555|0;AS_VarDP=0|59|0;DP=59;QUALapprox=2555;RAW_GT_COUNT=0,0,1;RAW_MQandDP=211825,59;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:2555,0,2555:0,0,29,30 +chrX 1034360 . G . . END=1034414 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1559 +chrX 1034415 . CTT C, 814.01 . AS_QUALapprox=|824|0;AS_VarDP=1|27|0;BaseQRankSum=-0.432;DP=58;MQRankSum=-0.371;QUALapprox=824;RAW_GT_COUNT=0,0,1;RAW_MQandDP=202453,58;ReadPosRankSum=-1.487;VarDP=28 GT:AD:DP:GQ:PL:SB 1:1,27,0:28:99:824,0,826:1,0,8,19 +chrX 1034418 . T . . END=1034447 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,1018 +chrX 1034448 . C T, 37.04 . AS_QUALapprox=|47|0;AS_VarDP=18|19|0;BaseQRankSum=0.675;DP=40;MQRankSum=0.085;QUALapprox=47;RAW_GT_COUNT=0,0,1;RAW_MQandDP=138347,40;ReadPosRankSum=-0.152;VarDP=37 GT:AD:DP:GQ:PL:SB 1:18,19,0:37:47:47,0,650:4,14,9,10 +chrX 1034449 . G . . END=1034596 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,1291 +chrX 1034597 . G GTT, 2209.01 . AS_QUALapprox=|2219|0;AS_VarDP=0|56|0;DP=61;QUALapprox=2219;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,56,0:56:99:2219,0,2219:0,0,31,25 +chrX 1034598 . T . . END=1035275 GT:DP:GQ:MIN_DP:PL 0:63:34:60:0,34 +chrX 1035276 . G C, 392.04 . AS_QUALapprox=|402|0;AS_VarDP=23|36|0;BaseQRankSum=-1.316;DP=60;MQRankSum=0.000;QUALapprox=402;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;ReadPosRankSum=-1.430;VarDP=59 GT:AD:DP:GQ:PL:SB 1:23,36,0:59:99:402,0,1176:8,15,15,21 +chrX 1035277 . A . . END=1035310 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1800 +chrX 1035311 . TCC T, 2664.01 . AS_QUALapprox=|2674|0;AS_VarDP=0|63|0;DP=65;QUALapprox=2674;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,63,0:63:99:2674,0,2674:0,0,27,36 +chrX 1035314 . C . . END=1035406 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,1340 +chrX 1035407 . C T, 1319.04 . AS_QUALapprox=|1329|0;AS_VarDP=0|40|0;DP=43;QUALapprox=1329;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154800,43;VarDP=40 GT:AD:DP:GQ:PL:SB 1:0,40,0:40:99:1329,0,1329:0,0,22,18 +chrX 1035408 . G . . END=1035579 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1171 +chrX 1035580 . G C, 1817.04 . AS_QUALapprox=|1827|0;AS_VarDP=0|55|0;DP=57;QUALapprox=1827;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:1827,0,1827:0,0,26,29 +chrX 1035581 . C . . END=1035623 GT:DP:GQ:MIN_DP:PL 0:46:99:46:0,1191 +chrX 1035624 . G A, 1190.04 . AS_QUALapprox=|1200|0;AS_VarDP=1|39|0;BaseQRankSum=2.047;DP=40;MQRankSum=0.000;QUALapprox=1200;RAW_GT_COUNT=0,0,1;RAW_MQandDP=144000,40;ReadPosRankSum=0.910;VarDP=40 GT:AD:DP:GQ:PL:SB 1:1,39,0:40:99:1200,0,1210:1,0,20,19 +chrX 1035625 . C . . END=1035636 GT:DP:GQ:MIN_DP:PL 0:41:99:41:0,1187 +chrX 1035637 . G GA, 946.01 . AS_QUALapprox=|956|0;AS_VarDP=1|40|0;BaseQRankSum=-0.393;DP=54;MQRankSum=0.000;QUALapprox=956;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;ReadPosRankSum=-0.211;VarDP=41 GT:AD:DP:GQ:PL:SB 1:1,40,0:41:99:956,0,983:0,1,24,16 +chrX 1035638 . A . . END=1036075 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1564 +chrX 1036076 . G A, 1618.04 . AS_QUALapprox=|1628|0;AS_VarDP=0|49|0;DP=52;QUALapprox=1628;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=49 GT:AD:DP:GQ:PL:SB 1:0,49,0:49:99:1628,0,1628:0,0,24,25 +chrX 1036077 . G . . END=1036592 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,223 +chrX 1036593 . G . . END=1036593 GT:DP:GQ:MIN_DP:PL 0:51:0:51:0,0 +chrX 1036594 . T . . END=1036730 GT:DP:GQ:MIN_DP:PL 0:55:32:52:0,32 +chrX 1036731 . G A, 162.04 . AS_QUALapprox=|172|0;AS_VarDP=18|20|0;BaseQRankSum=2.475;DP=56;MQRankSum=0.961;QUALapprox=172;RAW_GT_COUNT=0,0,1;RAW_MQandDP=193941,56;ReadPosRankSum=0.555;VarDP=38 GT:AD:DP:GQ:PL:SB 1:18,20,0:38:99:172,0,828:9,6,16,4 +chrX 1036732 . G . . END=1036733 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,337 +chrX 1036734 . A G, 1217.04 . AS_QUALapprox=|1367|0;AS_VarDP=0|37|0;DP=55;QUALapprox=1367;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190341,55;VarDP=37 GT:AD:DP:GQ:PL:SB 1:0,37,0:37:99:1367,0,1380:0,0,23,10 +chrX 1036735 . T . . END=1037082 GT:DP:GQ:MIN_DP:PL 0:43:51:41:0,51 +chrX 1037083 . A C, 1641.04 . AS_QUALapprox=|1651|0;AS_VarDP=0|43|0;DP=44;QUALapprox=1651;RAW_GT_COUNT=0,0,1;RAW_MQandDP=143442,44;VarDP=43 GT:AD:DP:GQ:PL:SB 1:0,43,0:43:99:1651,0,1651:0,0,23,20 +chrX 1037084 . C . . END=1037148 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,1285 +chrX 1037149 . C A, 2288.04 . AS_QUALapprox=|2298|0;AS_VarDP=0|52|0;DP=54;QUALapprox=2298;RAW_GT_COUNT=0,0,1;RAW_MQandDP=184590,54;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:2298,0,2298:0,0,27,25 +chrX 1037150 . G . . END=1037153 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1678 +chrX 1037154 . G A, 2427.04 . AS_QUALapprox=|2437|0;AS_VarDP=0|56|0;DP=57;QUALapprox=2437;RAW_GT_COUNT=0,0,1;RAW_MQandDP=196874,57;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,56,0:56:99:2437,0,2437:0,0,30,26 +chrX 1037155 . G . . END=1037235 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1673 +chrX 1037236 . G A, 1891.04 . AS_QUALapprox=|1901|0;AS_VarDP=0|58|0;DP=58;QUALapprox=1901;RAW_GT_COUNT=0,0,1;RAW_MQandDP=206602,58;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,58,0:58:99:1901,0,1901:0,0,38,20 +chrX 1037237 . C . . END=1037854 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1224 +chrX 1037855 . TTATATATATATATA T,TTA,TTATA, 723.01 . AS_QUALapprox=|733|388|43|0;AS_VarDP=1|20|4|2|0;BaseQRankSum=-0.381;DP=43;MQRankSum=-0.141;QUALapprox=733;RAW_GT_COUNT=0,0,1;RAW_MQandDP=152280,43;ReadPosRankSum=0.193;VarDP=27 GT:AD:DP:GQ:PL:SB 1:1,20,4,2,0:27:99:733,0,345,690,753:1,0,13,13 +chrX 1037870 . T . . END=1038067 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1125 +chrX 1038068 . T C, 1805.04 . AS_QUALapprox=|1815|0;AS_VarDP=0|59|0;DP=63;QUALapprox=1815;RAW_GT_COUNT=0,0,1;RAW_MQandDP=225650,63;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:1815,0,1815:0,0,35,24 +chrX 1038069 . A . . END=1038395 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1800 +chrX 1038396 . G A, 2029.04 . AS_QUALapprox=|2039|0;AS_VarDP=0|62|0;DP=64;QUALapprox=2039;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:2039,0,2039:0,0,23,39 +chrX 1038397 . T . . END=1038467 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1757 +chrX 1038468 . C A, 2160.04 . AS_QUALapprox=|2170|0;AS_VarDP=0|69|0;DP=70;QUALapprox=2170;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,69,0:69:99:2170,0,2170:0,0,33,36 +chrX 1038469 . C . . END=1039956 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1408 +chrX 1039957 . C A, 1238.04 . AS_QUALapprox=|1248|0;AS_VarDP=2|40|0;BaseQRankSum=3.029;DP=45;MQRankSum=0.000;QUALapprox=1248;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162000,45;ReadPosRankSum=-2.039;VarDP=42 GT:AD:DP:GQ:PL:SB 1:2,40,0:42:99:1248,0,1267:1,1,19,21 +chrX 1039958 . C . . END=1040002 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1439 +chrX 1040003 . A G, 1786.04 . AS_QUALapprox=|1796|0;AS_VarDP=0|60|0;DP=63;QUALapprox=1796;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:1796,0,1796:0,0,23,37 +chrX 1040004 . G . . END=1040714 GT:DP:GQ:MIN_DP:PL 0:75:99:75:0,1800 +chrX 1040715 . C T, 2248.04 . AS_QUALapprox=|2258|0;AS_VarDP=0|68|0;DP=69;QUALapprox=2258;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,68,0:68:99:2258,0,2258:0,0,31,37 +chrX 1040716 . A . . END=1040741 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1800 +chrX 1040742 . C T, 1954.04 . AS_QUALapprox=|1964|0;AS_VarDP=0|58|0;DP=59;QUALapprox=1964;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,58,0:58:99:1964,0,1964:0,0,31,27 +chrX 1040743 . G . . END=1040757 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1800 +chrX 1040758 . T C, 1861.04 . AS_QUALapprox=|1871|0;AS_VarDP=0|56|0;DP=58;QUALapprox=1871;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,56,0:56:99:1871,0,1871:0,0,31,25 +chrX 1040759 . T . . END=1041496 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1492 +chrX 1041497 . G A, 76.04 . AS_QUALapprox=|86|0;AS_VarDP=32|31|0;BaseQRankSum=2.929;DP=65;MQRankSum=0.000;QUALapprox=86;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;ReadPosRankSum=-0.640;VarDP=63 GT:AD:DP:GQ:PL:SB 1:32,31,0:63:86:86,0,1068:12,20,12,19 +chrX 1041498 . A . . END=1041708 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1707 +chrX 1041709 . ATCTG A, 2310.01 . AS_QUALapprox=|2320|0;AS_VarDP=0|52|0;DP=58;QUALapprox=2320;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:2320,0,2320:0,0,27,25 +chrX 1041714 . T . . END=1041870 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1152 +chrX 1041871 . T TATCA, 1716.01 . AS_QUALapprox=|1726|0;AS_VarDP=0|39|0;DP=45;QUALapprox=1726;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162000,45;VarDP=39 GT:AD:DP:GQ:PL:SB 1:0,39,0:39:99:1726,0,1727:0,0,19,20 +chrX 1041872 . A . . END=1042254 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1171 +chrX 1042255 . C G, 2312.04 . AS_QUALapprox=|2322|0;AS_VarDP=0|72|0;DP=75;QUALapprox=2322;RAW_GT_COUNT=0,0,1;RAW_MQandDP=270000,75;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,72,0:72:99:2322,0,2322:0,0,41,31 +chrX 1042256 . T . . END=1042372 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,402 +chrX 1042373 . A ATCTC, 170.01 . AS_QUALapprox=|1209|0;AS_VarDP=18|40|0;BaseQRankSum=-0.646;DP=64;MQRankSum=0.000;QUALapprox=1209;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;ReadPosRankSum=0.050;VarDP=58 GT:AD:DP:GQ:PL:SB 1:18,40,0:58:99:1209,0,1150:1,1,8,15 +chrX 1042374 . T . . END=1043056 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1157 +chrX 1043057 . C T, 298.04 . AS_QUALapprox=|308|0;AS_VarDP=14|23|0;BaseQRankSum=1.082;DP=38;MQRankSum=0.000;QUALapprox=308;RAW_GT_COUNT=0,0,1;RAW_MQandDP=134721,38;ReadPosRankSum=-0.392;VarDP=37 GT:AD:DP:GQ:PL:SB 1:14,23,0:37:99:308,0,754:2,12,8,15 +chrX 1043058 . C . . END=1043586 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,918 +chrX 1043587 . A G, 2180.04 . AS_QUALapprox=|2190|0;AS_VarDP=0|51|0;DP=54;QUALapprox=2190;RAW_GT_COUNT=0,0,1;RAW_MQandDP=188867,54;VarDP=51 GT:AD:DP:GQ:PL:SB 1:0,51,0:51:99:2190,0,2190:0,0,35,16 +chrX 1043588 . G . . END=1043607 GT:DP:GQ:MIN_DP:PL 0:47:99:47:0,1499 +chrX 1043608 . GATCGAGACCATCCTGGCTAACATGGTGAA G, 2191.01 . AS_QUALapprox=|2201|0;AS_VarDP=0|50|0;DP=51;QUALapprox=2201;RAW_GT_COUNT=0,0,1;RAW_MQandDP=177722,51;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,50,0:50:99:2201,0,2201:0,0,33,17 +chrX 1043638 . A . . END=1043770 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,578 +chrX 1043771 . C T, 463.04 . AS_QUALapprox=|473|0;AS_VarDP=18|38|0;BaseQRankSum=0.432;DP=58;MQRankSum=1.491;QUALapprox=473;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208336,58;ReadPosRankSum=0.588;VarDP=56 GT:AD:DP:GQ:PL:SB 1:18,38,0:56:99:473,0,1251:9,9,14,24 +chrX 1043772 . A . . END=1043813 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1397 +chrX 1043814 . CAAA C,AAAA, 919.01 . AS_QUALapprox=|929|0|0;AS_VarDP=7|33|2|0;BaseQRankSum=-0.577;DP=56;MQRankSum=0.000;QUALapprox=929;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;ReadPosRankSum=-0.169;VarDP=42 GT:AD:DP:GQ:PL:SB 1:7,33,2,0:42:99:929,0,1208,1338:4,3,7,28 +chrX 1043818 . A . . END=1043851 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,1466 +chrX 1043852 . G C, 1482.04 . AS_QUALapprox=|1492|0;AS_VarDP=0|47|0;DP=49;QUALapprox=1492;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=47 GT:AD:DP:GQ:PL:SB 1:0,47,0:47:99:1492,0,1492:0,0,17,30 +chrX 1043853 . A . . END=1044096 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1320 +chrX 1044097 . T C, 1655.04 . AS_QUALapprox=|1665|0;AS_VarDP=0|51|0;DP=55;QUALapprox=1665;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194745,55;VarDP=51 GT:AD:DP:GQ:PL:SB 1:0,51,0:51:99:1665,0,1665:0,0,29,22 +chrX 1044098 . C . . END=1044245 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1593 +chrX 1044246 . T C, 127.04 . AS_QUALapprox=|137|0;AS_VarDP=32|40|0;BaseQRankSum=-1.899;DP=73;MQRankSum=1.313;QUALapprox=137;RAW_GT_COUNT=0,0,1;RAW_MQandDP=257874,73;ReadPosRankSum=0.397;VarDP=72 GT:AD:DP:GQ:PL:SB 1:32,40,0:72:99:137,0,1220:18,14,18,22 +chrX 1044247 . G . . END=1044257 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1800 +chrX 1044258 . A G, 2754.04 . AS_QUALapprox=|2764|0;AS_VarDP=1|73|0;BaseQRankSum=-0.474;DP=75;MQRankSum=3.927;QUALapprox=2764;RAW_GT_COUNT=0,0,1;RAW_MQandDP=263410,75;ReadPosRankSum=-0.949;VarDP=74 GT:AD:DP:GQ:PL:SB 1:1,73,0:74:99:2764,0,2799:1,0,36,37 +chrX 1044259 . T . . END=1044367 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1800 +chrX 1044368 . CT C, 205.01 . AS_QUALapprox=|215|0;AS_VarDP=21|27|0;BaseQRankSum=1.912;DP=67;MQRankSum=1.651;QUALapprox=215;RAW_GT_COUNT=0,0,1;RAW_MQandDP=238201,67;ReadPosRankSum=-0.842;VarDP=48 GT:AD:DP:GQ:PL:SB 1:21,27,0:48:99:215,0,749:14,7,15,12 +chrX 1044370 . T . . END=1045395 GT:DP:GQ:MIN_DP:PL 0:62:50:62:0,50 +chrX 1045396 . C . . END=1045396 GT:DP:GQ:MIN_DP:PL 0:66:0:66:0,0 +chrX 1045397 . A . . END=1046211 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,278 +chrX 1046212 . C T, 135.04 . AS_QUALapprox=|145|0;AS_VarDP=31|34|0;BaseQRankSum=1.456;DP=67;MQRankSum=-0.924;QUALapprox=145;RAW_GT_COUNT=0,0,1;RAW_MQandDP=239625,67;ReadPosRankSum=-0.171;VarDP=65 GT:AD:DP:GQ:PL:SB 1:31,34,0:65:99:145,0,1139:13,18,21,13 +chrX 1046213 . T . . END=1046455 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1559 +chrX 1046456 . T C, 39.04 . AS_QUALapprox=|49|0;AS_VarDP=29|31|0;BaseQRankSum=-0.754;DP=64;MQRankSum=0.000;QUALapprox=49;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;ReadPosRankSum=-1.006;VarDP=60 GT:AD:DP:GQ:PL:SB 1:29,31,0:60:49:49,0,1038:12,17,14,17 +chrX 1046457 . G . . END=1046916 GT:DP:GQ:MIN_DP:PL 0:53:36:52:0,36 +chrX 1046917 . G . . END=1046917 GT:DP:GQ:MIN_DP:PL 0:48:0:48:0,0 +chrX 1046918 . G . . END=1047072 GT:DP:GQ:MIN_DP:PL 0:45:99:45:0,180 +chrX 1047073 . GAAGGAAGGAAGAAAGA G, 169.01 . AS_QUALapprox=|179|0;AS_VarDP=0|4|0;DP=10;QUALapprox=179;RAW_GT_COUNT=0,0,1;RAW_MQandDP=36000,10;VarDP=4 GT:AD:DP:GQ:PL:SB 1:0,4,0:4:99:179,0,179:0,0,4,0 +chrX 1047090 . A . . END=1047695 GT:DP:GQ:MIN_DP:PL 0:64:90:64:0,90 +chrX 1047696 . T TTCTC,TTCTCTCTCTCTCTCTCTC, 784.01 . AS_QUALapprox=|794|568|0;AS_VarDP=0|11|6|0;DP=46;QUALapprox=794;RAW_GT_COUNT=0,0,1;RAW_MQandDP=157369,46;VarDP=17 GT:AD:DP:GQ:PL:SB 1:0,11,6,0:17:99:794,0,226,631:0,0,9,8 +chrX 1047697 . T . . END=1047871 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,589 +chrX 1047872 . GA G, 396.01 . AS_QUALapprox=|406|0;AS_VarDP=26|40|0;BaseQRankSum=1.604;DP=74;MQRankSum=0.000;QUALapprox=406;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;ReadPosRankSum=-0.216;VarDP=66 GT:AD:DP:GQ:PL:SB 1:26,40,0:66:99:406,0,1147:14,12,22,18 +chrX 1047874 . A . . END=1048299 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1573 +chrX 1048300 . A T, 262.04 . AS_QUALapprox=|272|0;AS_VarDP=20|32|0;BaseQRankSum=-2.542;DP=58;MQRankSum=-0.751;QUALapprox=272;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208225,58;ReadPosRankSum=-0.141;VarDP=52 GT:AD:DP:GQ:PL:SB 1:20,32,0:52:99:272,0,957:10,10,13,19 +chrX 1048301 . C . . END=1048389 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1434 +chrX 1048390 . C G, 208.04 . AS_QUALapprox=|218|0;AS_VarDP=18|24|0;BaseQRankSum=0.017;DP=52;MQRankSum=0.000;QUALapprox=218;RAW_GT_COUNT=0,0,1;RAW_MQandDP=184896,52;ReadPosRankSum=-1.525;VarDP=42 GT:AD:DP:GQ:PL:SB 1:18,24,0:42:99:218,0,773:9,9,8,16 +chrX 1048391 . C . . END=1048564 GT:DP:GQ:MIN_DP:PL 0:26:45:26:0,45 +chrX 1048565 . AGG A, 278.01 . AS_QUALapprox=|288|0;AS_VarDP=0|12|0;DP=15;QUALapprox=288;RAW_GT_COUNT=0,0,1;RAW_MQandDP=45696,15;VarDP=12 GT:AD:DP:GQ:PL:SB 1:0,12,0:12:99:288,0,375:0,0,8,4 +chrX 1048568 . AAGGGGAAGGGAAGGGAAGGAAGGAAGGAAGGACGGACGGAAGGAAGGGAGAGAAAGAAAGAAAGAAAGAAGGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAG *,A, 225.01 . AS_QUALapprox=|0|235|0;AS_VarDP=2|0|12|0;DP=20;MQRankSum=1.153;QUALapprox=235;RAW_GT_COUNT=0,0,1;RAW_MQandDP=55509,20;VarDP=14 GT:AD:DP:GQ:PL:SB 2:2,0,12,0:14:99:235,462,0,376:1,1,8,4 +chrX 1048721 . G . . END=1048966 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,471 +chrX 1048967 . T . . END=1048967 GT:DP:GQ:MIN_DP:PL 0:74:19:74:0,19 +chrX 1048968 . C . . END=1049240 GT:DP:GQ:MIN_DP:PL 0:75:99:75:0,114 +chrX 1049241 . C T, 86.04 . AS_QUALapprox=|96|0;AS_VarDP=36|36|0;BaseQRankSum=1.562;DP=73;MQRankSum=0.000;QUALapprox=96;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;ReadPosRankSum=0.231;VarDP=72 GT:AD:DP:GQ:PL:SB 1:36,36,0:72:96:96,0,1201:16,20,15,21 +chrX 1049242 . A . . END=1050447 GT:DP:GQ:MIN_DP:PL 0:52:33:33:0,33 +chrX 1050448 . T . . END=1050448 GT:DP:GQ:MIN_DP:PL 0:67:0:67:0,0 +chrX 1050449 . T . . END=1051323 GT:DP:GQ:MIN_DP:PL 0:70:37:69:0,37 +chrX 1051324 . G A, 2680.04 . AS_QUALapprox=|2690|0;AS_VarDP=0|81|0;DP=86;QUALapprox=2690;RAW_GT_COUNT=0,0,1;RAW_MQandDP=309600,86;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,81,0:81:99:2690,0,2690:0,0,40,41 +chrX 1051325 . T . . END=1051664 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1648 +chrX 1051665 . A . . END=1051665 GT:DP:GQ:MIN_DP:PL 0:62:11:62:0,11 +chrX 1051666 . A . . END=1052560 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,759 +chrX 1052561 . C T, 1461.04 . AS_QUALapprox=|1471|0;AS_VarDP=0|46|0;DP=57;QUALapprox=1471;RAW_GT_COUNT=0,0,1;RAW_MQandDP=170314,57;VarDP=46 GT:AD:DP:GQ:PL:SB 1:0,46,0:46:99:1471,0,1861:0,0,23,23 +chrX 1052562 . C . . END=1052756 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,500 +chrX 1052757 . C A, 287.04 . AS_QUALapprox=|297|0;AS_VarDP=27|40|0;BaseQRankSum=-3.089;DP=67;MQRankSum=0.000;QUALapprox=297;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;ReadPosRankSum=1.490;VarDP=67 GT:AD:DP:GQ:PL:SB 1:27,40,0:67:99:297,0,1190:18,9,20,20 +chrX 1052758 . T . . END=1053705 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1668 +chrX 1053706 . C T, 5.04 . AS_QUALapprox=|15|0;AS_VarDP=26|27|0;BaseQRankSum=-0.537;DP=56;MQRankSum=0.027;QUALapprox=15;RAW_GT_COUNT=0,0,1;RAW_MQandDP=199528,56;ReadPosRankSum=0.854;VarDP=53 GT:AD:DP:GQ:PL:SB 1:26,27,0:53:15:15,0,853:11,15,14,13 +chrX 1053707 . G . . END=1056556 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,173 +chrX 1056557 . A . . END=1056557 GT:DP:GQ:MIN_DP:PL 0:27:1:27:0,1 +chrX 1056558 . T . . END=1056801 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,997 +chrX 1056802 . C T, 687.04 . AS_QUALapprox=|697|0;AS_VarDP=19|37|0;BaseQRankSum=2.567;DP=57;MQRankSum=2.018;QUALapprox=697;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201536,57;ReadPosRankSum=0.606;VarDP=56 GT:AD:DP:GQ:PL:SB 1:19,37,0:56:99:697,0,1219:12,7,16,21 +chrX 1056803 . G . . END=1057561 GT:DP:GQ:MIN_DP:PL 0:57:94:57:0,94 +chrX 1057562 . T TCTCAGCTCACTGCAACCTCTGCTTCCCCAATTCAAATGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCAC, 2743.01 . AS_QUALapprox=|2753|0;AS_VarDP=1|69|0;BaseQRankSum=0.853;DP=90;MQRankSum=-0.611;QUALapprox=2753;RAW_GT_COUNT=0,0,1;RAW_MQandDP=282765,90;ReadPosRankSum=-1.552;VarDP=70 GT:AD:DP:GQ:PL:SB 1:1,69,0:70:99:2753,0,2797:0,1,36,33 +chrX 1057563 . C . . END=1058135 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,100 +chrX 1058136 . C T, 190.04 . AS_QUALapprox=|200|0;AS_VarDP=31|35|0;BaseQRankSum=2.621;DP=69;MQRankSum=0.000;QUALapprox=200;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;ReadPosRankSum=-1.311;VarDP=66 GT:AD:DP:GQ:PL:SB 1:31,35,0:66:99:200,0,1575:22,9,23,12 +chrX 1058137 . G A, 190.04 . AS_QUALapprox=|200|0;AS_VarDP=31|35|0;BaseQRankSum=2.239;DP=69;MQRankSum=0.000;QUALapprox=200;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;ReadPosRankSum=-1.619;VarDP=66 GT:AD:DP:GQ:PL:SB 1:31,35,0:66:99:200,0,1575:22,9,23,12 +chrX 1058138 . T . . END=1058140 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1800 +chrX 1058141 . T C, 190.04 . AS_QUALapprox=|200|0;AS_VarDP=31|35|0;BaseQRankSum=1.844;DP=69;MQRankSum=0.000;QUALapprox=200;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;ReadPosRankSum=-1.594;VarDP=66 GT:AD:DP:GQ:PL:SB 1:31,35,0:66:99:200,0,1575:21,10,23,12 +chrX 1058142 . G . . END=1058302 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,104 +chrX 1058303 . C G, 99.04 . AS_QUALapprox=|109|0;AS_VarDP=28|32|0;BaseQRankSum=-0.741;DP=62;MQRankSum=1.102;QUALapprox=109;RAW_GT_COUNT=0,0,1;RAW_MQandDP=222625,62;ReadPosRankSum=-0.823;VarDP=60 GT:AD:DP:GQ:PL:SB 1:28,32,0:60:99:109,0,1042:12,16,15,17 +chrX 1058304 . A . . END=1058969 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1565 +chrX 1058970 . C T, 2307.04 . AS_QUALapprox=|2317|0;AS_VarDP=0|69|0;DP=71;QUALapprox=2317;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,69,0:69:99:2317,0,2317:0,0,38,31 +chrX 1058971 . T . . END=1059046 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1800 +chrX 1059047 . T C, 1855.04 . AS_QUALapprox=|1865|0;AS_VarDP=2|59|0;BaseQRankSum=2.778;DP=61;MQRankSum=0.000;QUALapprox=1865;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;ReadPosRankSum=0.466;VarDP=61 GT:AD:DP:GQ:PL:SB 1:2,59,0:61:99:1865,0,1899:1,1,27,32 +chrX 1059048 . C . . END=1059129 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1738 +chrX 1059130 . AT A, 1668.01 . AS_QUALapprox=|1678|0;AS_VarDP=0|55|0;DP=62;QUALapprox=1678;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:1678,0,1678:0,0,30,25 +chrX 1059132 . T . . END=1059244 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1800 +chrX 1059245 . C G, 2102.04 . AS_QUALapprox=|2112|0;AS_VarDP=0|67|0;DP=68;QUALapprox=2112;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,67,0:67:99:2112,0,2112:0,0,39,28 +chrX 1059246 . C . . END=1059509 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1800 +chrX 1059510 . C T, 2347.04 . AS_QUALapprox=|2357|0;AS_VarDP=0|73|0;DP=73;QUALapprox=2357;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,73,0:73:99:2357,0,2357:0,0,31,42 +chrX 1059511 . G . . END=1059714 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1701 +chrX 1059715 . A G, 1727.04 . AS_QUALapprox=|1737|0;AS_VarDP=0|53|0;DP=55;QUALapprox=1737;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=53 GT:AD:DP:GQ:PL:SB 1:0,53,0:53:99:1737,0,1737:0,0,29,24 +chrX 1059716 . G . . END=1059916 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1444 +chrX 1059917 . T G, 1999.04 . AS_QUALapprox=|2009|0;AS_VarDP=0|60|0;DP=61;QUALapprox=2009;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:2009,0,2009:0,0,28,32 +chrX 1059918 . G . . END=1060378 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1443 +chrX 1060379 . G A, 2573.04 . AS_QUALapprox=|2583|0;AS_VarDP=0|59|0;DP=61;QUALapprox=2583;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:2583,0,2583:0,0,34,25 +chrX 1060380 . C . . END=1060395 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1800 +chrX 1060396 . C T, 2633.04 . AS_QUALapprox=|2643|0;AS_VarDP=0|61|0;DP=62;QUALapprox=2643;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,61,0:61:99:2643,0,2643:0,0,38,23 +chrX 1060397 . G . . END=1060772 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1800 +chrX 1060773 . A G, 2350.04 . AS_QUALapprox=|2360|0;AS_VarDP=0|74|0;DP=76;QUALapprox=2360;RAW_GT_COUNT=0,0,1;RAW_MQandDP=273600,76;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,74,0:74:99:2360,0,2360:0,0,34,40 +chrX 1060774 . G . . END=1061124 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1800 +chrX 1061125 . T C, 2629.04 . AS_QUALapprox=|2639|0;AS_VarDP=0|82|0;DP=83;QUALapprox=2639;RAW_GT_COUNT=0,0,1;RAW_MQandDP=298800,83;VarDP=82 GT:AD:DP:GQ:PL:SB 1:0,82,0:82:99:2639,0,2639:0,0,47,35 +chrX 1061126 . T . . END=1061236 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1658 +chrX 1061237 . CT C, 1514.01 . AS_QUALapprox=|1524|0;AS_VarDP=0|49|0;DP=55;QUALapprox=1524;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=49 GT:AD:DP:GQ:PL:SB 1:0,49,0:49:99:1524,0,1524:0,0,23,26 +chrX 1061239 . T . . END=1061358 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1703 +chrX 1061359 . T C, 2183.04 . AS_QUALapprox=|2193|0;AS_VarDP=0|67|0;DP=68;QUALapprox=2193;RAW_GT_COUNT=0,0,1;RAW_MQandDP=238262,68;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,67,0:67:99:2193,0,2193:0,0,28,39 +chrX 1061360 . C . . END=1062214 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,258 +chrX 1062215 . T C, 2434.04 . AS_QUALapprox=|2444|0;AS_VarDP=0|62|0;DP=65;QUALapprox=2444;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:2444,0,2444:0,0,31,31 +chrX 1062216 . G . . END=1062221 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1800 +chrX 1062222 . C A, 462.04 . AS_QUALapprox=|472|0;AS_VarDP=22|36|0;BaseQRankSum=0.898;DP=58;MQRankSum=0.000;QUALapprox=472;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;ReadPosRankSum=-0.321;VarDP=58 GT:AD:DP:GQ:PL:SB 1:22,36,0:58:99:472,0,1161:12,10,17,19 +chrX 1062223 . C . . END=1062551 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1300 +chrX 1062552 . C G, 1804.04 . AS_QUALapprox=|1814|0;AS_VarDP=0|56|0;DP=59;QUALapprox=1814;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,56,0:56:99:1814,0,1814:0,0,31,25 +chrX 1062553 . G . . END=1063362 GT:DP:GQ:MIN_DP:PL 0:59:70:59:0,70 +chrX 1063363 . C T, 0.89 . AS_QUALapprox=|10|0;AS_VarDP=26|26|0;BaseQRankSum=1.543;DP=54;MQRankSum=0.000;QUALapprox=10;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;ReadPosRankSum=0.679;VarDP=52 GT:AD:DP:GQ:PL:SB 1:26,26,0:52:10:10,0,1153:11,15,15,11 +chrX 1063364 . G . . END=1063368 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1260 +chrX 1063369 . A . . END=1063369 GT:DP:GQ:MIN_DP:PL 0:55:15:55:0,15 +chrX 1063370 . A . . END=1063445 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1747 +chrX 1063446 . C T, 48.04 . AS_QUALapprox=|58|0;AS_VarDP=37|33|0;BaseQRankSum=2.904;DP=75;MQRankSum=1.945;QUALapprox=58;RAW_GT_COUNT=0,0,1;RAW_MQandDP=263524,75;ReadPosRankSum=-0.224;VarDP=70 GT:AD:DP:GQ:PL:SB 1:37,33,0:70:58:58,0,1097:20,17,20,13 +chrX 1063447 . G . . END=1063483 GT:DP:GQ:MIN_DP:PL 0:73:99:73:0,1800 +chrX 1063484 . G C, 115.04 . AS_QUALapprox=|125|0;AS_VarDP=37|40|0;BaseQRankSum=0.933;DP=79;MQRankSum=0.450;QUALapprox=125;RAW_GT_COUNT=0,0,1;RAW_MQandDP=277254,79;ReadPosRankSum=1.783;VarDP=77 GT:AD:DP:GQ:PL:SB 1:37,40,0:77:99:125,0,1778:24,13,24,16 +chrX 1063485 . G . . END=1063495 GT:DP:GQ:MIN_DP:PL 0:77:99:77:0,1800 +chrX 1063496 . G A, 45.04 . AS_QUALapprox=|55|0;AS_VarDP=39|40|0;BaseQRankSum=1.630;DP=80;MQRankSum=0.378;QUALapprox=55;RAW_GT_COUNT=0,0,1;RAW_MQandDP=280854,80;ReadPosRankSum=1.741;VarDP=79 GT:AD:DP:GQ:PL:SB 1:39,40,0:79:55:55,0,1778:26,13,24,16 +chrX 1063497 . G . . END=1063795 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1800 +chrX 1063796 . G A, 1797.04 . AS_QUALapprox=|1807|0;AS_VarDP=0|54|0;DP=59;QUALapprox=1807;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=54 GT:AD:DP:GQ:PL:SB 1:0,54,0:54:99:1807,0,1807:0,0,33,21 +chrX 1063797 . A . . END=1063930 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1800 +chrX 1063931 . G A, 1981.04 . AS_QUALapprox=|1991|0;AS_VarDP=0|59|0;DP=64;QUALapprox=1991;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:1991,0,1991:0,0,24,35 +chrX 1063932 . T . . END=1064329 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1580 +chrX 1064330 . A G, 1693.04 . AS_QUALapprox=|1703|0;AS_VarDP=0|49|0;DP=52;QUALapprox=1703;RAW_GT_COUNT=0,0,1;RAW_MQandDP=185729,52;VarDP=49 GT:AD:DP:GQ:PL:SB 1:0,49,0:49:99:1703,0,1703:0,0,24,25 +chrX 1064331 . G . . END=1064603 GT:DP:GQ:MIN_DP:PL 0:61:59:61:0,59 +chrX 1064604 . C T, 2409.04 . AS_QUALapprox=|2419|0;AS_VarDP=0|54|0;DP=54;QUALapprox=2419;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=54 GT:AD:DP:GQ:PL:SB 1:0,54,0:54:99:2419,0,2419:0,0,30,24 +chrX 1064605 . T . . END=1064613 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1786 +chrX 1064614 . C T, 2512.04 . AS_QUALapprox=|2522|0;AS_VarDP=0|57|0;DP=61;QUALapprox=2522;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:2522,0,2522:0,0,33,24 +chrX 1064615 . C . . END=1064649 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1800 +chrX 1064650 . G C, 2010.04 . AS_QUALapprox=|2020|0;AS_VarDP=0|61|0;DP=63;QUALapprox=2020;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,61,0:61:99:2020,0,2020:0,0,32,29 +chrX 1064651 . G . . END=1064749 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1509 +chrX 1064750 . C T, 1563.04 . AS_QUALapprox=|1573|0;AS_VarDP=0|48|0;DP=50;QUALapprox=1573;RAW_GT_COUNT=0,0,1;RAW_MQandDP=164725,50;VarDP=48 GT:AD:DP:GQ:PL:SB 1:0,48,0:48:99:1573,0,1573:0,0,24,24 +chrX 1064751 . G . . END=1064782 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,1469 +chrX 1064783 . A G, 1463.04 . AS_QUALapprox=|1473|0;AS_VarDP=1|47|0;BaseQRankSum=2.184;DP=49;MQRankSum=-0.754;QUALapprox=1473;RAW_GT_COUNT=0,0,1;RAW_MQandDP=139206,49;ReadPosRankSum=1.083;VarDP=48 GT:AD:DP:GQ:PL:SB 1:1,47,0:48:99:1473,0,1482:0,1,23,24 +chrX 1064784 . A . . END=1064841 GT:DP:GQ:MIN_DP:PL 0:46:99:46:0,1360 +chrX 1064842 . C G, 1912.04 . AS_QUALapprox=|1922|0;AS_VarDP=1|46|0;BaseQRankSum=2.299;DP=47;MQRankSum=-1.125;QUALapprox=1922;RAW_GT_COUNT=0,0,1;RAW_MQandDP=113320,47;ReadPosRankSum=1.291;VarDP=47 GT:AD:DP:GQ:PL:SB 1:1,46,0:47:99:1922,0,1932:1,0,25,21 +chrX 1064843 . C . . END=1064857 GT:DP:GQ:MIN_DP:PL 0:46:99:46:0,1356 +chrX 1064858 . T C, 2014.04 . AS_QUALapprox=|2024|0;AS_VarDP=0|45|0;DP=45;QUALapprox=2024;RAW_GT_COUNT=0,0,1;RAW_MQandDP=106120,45;VarDP=45 GT:AD:DP:GQ:PL:SB 1:0,45,0:45:99:2024,0,2024:0,0,23,22 +chrX 1064859 . A . . END=1064879 GT:DP:GQ:MIN_DP:PL 0:43:99:43:0,1335 +chrX 1064880 . T C, 1962.04 . AS_QUALapprox=|1972|0;AS_VarDP=0|46|0;DP=47;QUALapprox=1972;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115320,47;VarDP=46 GT:AD:DP:GQ:PL:SB 1:0,46,0:46:99:1972,0,1972:0,0,25,21 +chrX 1064881 . G . . END=1064910 GT:DP:GQ:MIN_DP:PL 0:44:99:44:0,1380 +chrX 1064911 . G T, 1489.04 . AS_QUALapprox=|1499|0;AS_VarDP=0|46|0;DP=47;QUALapprox=1499;RAW_GT_COUNT=0,0,1;RAW_MQandDP=130595,47;VarDP=46 GT:AD:DP:GQ:PL:SB 1:0,46,0:46:99:1499,0,1499:0,0,22,24 +chrX 1064912 . G . . END=1065159 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1365 +chrX 1065160 . G A, 2388.04 . AS_QUALapprox=|2398|0;AS_VarDP=0|55|0;DP=59;QUALapprox=2398;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201735,59;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:2398,0,2398:0,0,29,26 +chrX 1065161 . A C, 2388.04 . AS_QUALapprox=|2398|0;AS_VarDP=0|55|0;DP=59;QUALapprox=2398;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201735,59;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:2398,0,2398:0,0,29,26 +chrX 1065162 . C . . END=1065490 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,259 +chrX 1065491 . A T, 2014.04 . AS_QUALapprox=|2024|0;AS_VarDP=0|62|0;DP=64;QUALapprox=2024;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:2024,0,2024:0,0,35,27 +chrX 1065492 . C . . END=1065537 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1170 +chrX 1065538 . C A, 372.04 . AS_QUALapprox=|717|0;AS_VarDP=2|27|0;BaseQRankSum=-0.603;DP=61;MQRankSum=-0.139;QUALapprox=717;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219025,61;ReadPosRankSum=1.473;VarDP=29 GT:AD:DP:GQ:PL:SB 1:2,27,0:29:99:717,0,986:2,0,14,12 +chrX 1065539 . A . . END=1065743 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,615 +chrX 1065744 . CGTTA C, 3590.01 . AS_QUALapprox=|3600|0;AS_VarDP=0|80|0;DP=82;QUALapprox=3600;RAW_GT_COUNT=0,0,1;RAW_MQandDP=295200,82;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,80,0:80:99:3600,0,3600:0,0,30,50 +chrX 1065749 . G . . END=1065990 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1721 +chrX 1065991 . A G, 1604.04 . AS_QUALapprox=|1614|0;AS_VarDP=0|52|0;DP=54;QUALapprox=1614;RAW_GT_COUNT=0,0,1;RAW_MQandDP=193936,54;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:1614,0,1614:0,0,23,29 +chrX 1065992 . G . . END=1066959 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1387 +chrX 1066960 . C G, 2661.04 . AS_QUALapprox=|2671|0;AS_VarDP=0|64|0;DP=65;QUALapprox=2671;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,64,0:64:99:2671,0,2671:0,0,33,31 +chrX 1066961 . T . . END=1066976 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1773 +chrX 1066977 . G A, 2579.04 . AS_QUALapprox=|2589|0;AS_VarDP=0|61|0;DP=62;QUALapprox=2589;RAW_GT_COUNT=0,0,1;RAW_MQandDP=222001,62;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,61,0:61:99:2589,0,2589:0,0,33,28 +chrX 1066978 . T . . END=1067406 GT:DP:GQ:MIN_DP:PL 0:75:99:75:0,1065 +chrX 1067407 . T A, 1925.04 . AS_QUALapprox=|1935|0;AS_VarDP=0|60|0;DP=72;QUALapprox=1935;RAW_GT_COUNT=0,0,1;RAW_MQandDP=256804,72;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:1935,0,2331:0,0,30,30 +chrX 1067408 . T . . END=1067503 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1482 +chrX 1067504 . C CT,CTT, 291.01 . AS_QUALapprox=|301|0|0;AS_VarDP=16|26|2|0;BaseQRankSum=-0.655;DP=64;MQRankSum=0.000;QUALapprox=301;RAW_GT_COUNT=0,0,1;RAW_MQandDP=227481,64;ReadPosRankSum=-1.062;VarDP=44 GT:AD:DP:GQ:PL:SB 1:16,26,2,0:44:99:301,0,771,770:6,10,15,13 +chrX 1067505 . T . . END=1067668 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1553 +chrX 1067669 . G C, 561.04 . AS_QUALapprox=|571|0;AS_VarDP=20|35|0;BaseQRankSum=2.745;DP=64;MQRankSum=-1.985;QUALapprox=571;RAW_GT_COUNT=0,0,1;RAW_MQandDP=207435,64;ReadPosRankSum=-1.628;VarDP=55 GT:AD:DP:GQ:PL:SB 1:20,35,0:55:99:571,0,1161:5,15,19,16 +chrX 1067670 . C . . END=1067706 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,1593 +chrX 1067707 . A T, 963.04 . AS_QUALapprox=|973|0;AS_VarDP=14|42|0;BaseQRankSum=1.764;DP=59;MQRankSum=-0.725;QUALapprox=973;RAW_GT_COUNT=0,0,1;RAW_MQandDP=188074,59;ReadPosRankSum=-0.057;VarDP=56 GT:AD:DP:GQ:PL:SB 1:14,42,0:56:99:973,0,1419:3,11,22,20 +chrX 1067708 . T . . END=1067904 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,983 +chrX 1067905 . T C, 2149.04 . AS_QUALapprox=|2159|0;AS_VarDP=0|67|0;DP=73;QUALapprox=2159;RAW_GT_COUNT=0,0,1;RAW_MQandDP=261700,73;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,67,0:67:99:2159,0,2159:0,0,31,36 +chrX 1067906 . T . . END=1067948 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1800 +chrX 1067949 . CT C, 1354.01 . AS_QUALapprox=|1364|0;AS_VarDP=0|49|0;DP=66;QUALapprox=1364;RAW_GT_COUNT=0,0,1;RAW_MQandDP=233429,66;VarDP=49 GT:AD:DP:GQ:PL:SB 1:0,49,0:49:99:1364,0,1364:0,0,24,25 +chrX 1067951 . T . . END=1068891 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1387 +chrX 1068892 . G A, 104.04 . AS_QUALapprox=|114|0;AS_VarDP=28|32|0;BaseQRankSum=-0.132;DP=61;MQRankSum=0.000;QUALapprox=114;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;ReadPosRankSum=-0.563;VarDP=60 GT:AD:DP:GQ:PL:SB 1:28,32,0:60:99:114,0,1037:12,16,19,13 +chrX 1068893 . T . . END=1069057 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1800 +chrX 1069058 . G T, 1881.04 . AS_QUALapprox=|1891|0;AS_VarDP=0|57|0;DP=58;QUALapprox=1891;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:1891,0,1891:0,0,24,33 +chrX 1069059 . G . . END=1069764 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1686 +chrX 1069765 . C T, 1905.04 . AS_QUALapprox=|1915|0;AS_VarDP=0|58|0;DP=60;QUALapprox=1915;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,58,0:58:99:1915,0,1915:0,0,32,26 +chrX 1069766 . G . . END=1070068 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1404 +chrX 1070069 . A G, 1503.04 . AS_QUALapprox=|1513|0;AS_VarDP=0|47|0;DP=47;QUALapprox=1513;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;VarDP=47 GT:AD:DP:GQ:PL:SB 1:0,47,0:47:99:1513,0,1513:0,0,23,24 +chrX 1070070 . T . . END=1070331 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1529 +chrX 1070332 . A C, 1917.04 . AS_QUALapprox=|1927|0;AS_VarDP=0|59|0;DP=60;QUALapprox=1927;RAW_GT_COUNT=0,0,1;RAW_MQandDP=214741,60;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:1927,0,1927:0,0,33,26 +chrX 1070333 . A . . END=1070437 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1800 +chrX 1070438 . G C, 1871.04 . AS_QUALapprox=|1881|0;AS_VarDP=1|56|0;BaseQRankSum=3.531;DP=59;MQRankSum=0.000;QUALapprox=1881;RAW_GT_COUNT=0,0,1;RAW_MQandDP=211825,59;ReadPosRankSum=-0.730;VarDP=57 GT:AD:DP:GQ:PL:SB 1:1,56,0:57:99:1881,0,1891:0,1,37,19 +chrX 1070439 . A . . END=1070611 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,1061 +chrX 1070612 . A G, 1262.04 . AS_QUALapprox=|1272|0;AS_VarDP=0|43|0;DP=44;QUALapprox=1272;RAW_GT_COUNT=0,0,1;RAW_MQandDP=156675,44;VarDP=43 GT:AD:DP:GQ:PL:SB 1:0,43,0:43:99:1272,0,1272:0,0,23,20 +chrX 1070613 . G . . END=1070708 GT:DP:GQ:MIN_DP:PL 0:41:99:41:0,720 +chrX 1070709 . A AAAGG,AAGG, 599.01 . AS_QUALapprox=|471|609|0;AS_VarDP=0|10|13|0;DP=24;QUALapprox=609;RAW_GT_COUNT=0,0,1;RAW_MQandDP=84096,24;VarDP=23 GT:AD:DP:GQ:PL:SB 2:0,10,13,0:23:99:609,138,0,570:0,0,15,8 +chrX 1070710 . A . . END=1070811 GT:DP:GQ:MIN_DP:PL 0:35:25:32:0,25 +chrX 1070812 . G GA, 311.79 . AS_QUALapprox=|322|0;AS_VarDP=8|15|0;DP=45;QUALapprox=322;RAW_GT_COUNT=0,0,1;RAW_MQandDP=159674,45;VarDP=23 GT:AD:DP:GQ:PL:SB 1:8,15,0:23:99:322,0,675:0,0,12,3 +chrX 1070813 . A . . END=1070855 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,541 +chrX 1070856 . G GAGAAAGAA,GAAAGAGAAAGAA, 136.01 . AS_QUALapprox=|0|146|0;AS_VarDP=17|0|15|0;BaseQRankSum=-1.164;DP=39;MQRankSum=1.002;QUALapprox=146;RAW_GT_COUNT=0,0,1;RAW_MQandDP=139825,39;ReadPosRankSum=2.136;VarDP=32 GT:AD:DP:GQ:PL:SB 2:17,0,15,0:32:99:146,665,0,788:11,6,12,3 +chrX 1070857 . A . . END=1070912 GT:DP:GQ:MIN_DP:PL 0:43:24:39:0,24 +chrX 1070913 . A AAAG, 2033.01 . AS_QUALapprox=|2043|0;AS_VarDP=0|48|0;DP=53;QUALapprox=2043;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190225,53;VarDP=48 GT:AD:DP:GQ:PL:SB 1:0,48,0:48:99:2043,0,2043:0,0,24,24 +chrX 1070914 . A . . END=1071131 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1756 +chrX 1071132 . T . . END=1071132 GT:DP:GQ:MIN_DP:PL 0:64:0:64:0,0 +chrX 1071133 . C . . END=1071248 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,158 +chrX 1071249 . G A, 2041.04 . AS_QUALapprox=|2051|0;AS_VarDP=0|62|0;DP=62;QUALapprox=2051;RAW_GT_COUNT=0,0,1;RAW_MQandDP=211267,62;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:2051,0,2051:0,0,31,31 +chrX 1071250 . G . . END=1072428 GT:DP:GQ:MIN_DP:PL 0:62:84:62:0,84 +chrX 1072429 . A G, 1641.04 . AS_QUALapprox=|1651|0;AS_VarDP=0|52|0;DP=53;QUALapprox=1651;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187801,53;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:1651,0,1651:0,0,23,29 +chrX 1072430 . G . . END=1073010 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,238 +chrX 1073011 . CAA C,CA,CAAAAAAAAA, 343.01 . AS_QUALapprox=|257|353|6|0;AS_VarDP=0|15|12|14|0;DP=55;QUALapprox=353;RAW_GT_COUNT=0,0,1;RAW_MQandDP=191496,55;VarDP=41 GT:AD:DP:GQ:PL:SB 2:0,15,12,14,0:41:96:353,96,0,347,411:0,0,27,14 +chrX 1073014 . A . . END=1073337 GT:DP:GQ:MIN_DP:PL 0:75:99:75:0,1455 +chrX 1073338 . G GCATAA, 964.01 . AS_QUALapprox=|974|0;AS_VarDP=2|32|0;BaseQRankSum=0.354;DP=52;MQRankSum=0.000;QUALapprox=974;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;ReadPosRankSum=0.696;VarDP=34 GT:AD:DP:GQ:PL:SB 1:2,32,0:34:99:974,0,1030:0,2,15,17 +chrX 1073339 . C . . END=1073354 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,510 +chrX 1073355 . G A,GTAACA, 1364.04 . AS_QUALapprox=|1374|0|0;AS_VarDP=1|34|0|0;BaseQRankSum=2.200;DP=51;MQRankSum=0.000;QUALapprox=1374;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;ReadPosRankSum=1.041;VarDP=35 GT:AD:DP:GQ:PL:SB 1:1,34,0,0:35:99:1374,0,1549,1489:0,1,16,18 +chrX 1073356 . T . . END=1073456 GT:DP:GQ:MIN_DP:PL 0:42:99:42:0,1191 +chrX 1073457 . T A, 1310.04 . AS_QUALapprox=|1320|0;AS_VarDP=0|38|0;DP=43;QUALapprox=1320;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154800,43;VarDP=38 GT:AD:DP:GQ:PL:SB 1:0,38,0:38:99:1320,0,1320:0,0,26,12 +chrX 1073458 . T . . END=1073672 GT:DP:GQ:MIN_DP:PL 0:84:99:84:0,1097 +chrX 1073673 . G . . END=1073673 GT:DP:GQ:MIN_DP:PL 0:138:0:138:0,0 +chrX 1073674 . A . . END=1073860 GT:DP:GQ:MIN_DP:PL 0:104:99:104:0,512 +chrX 1073861 . AAAAAT A, 35.01 . AS_QUALapprox=|45|0;AS_VarDP=2|3|0;BaseQRankSum=0.000;DP=7;MQRankSum=-1.036;QUALapprox=45;RAW_GT_COUNT=0,0,1;RAW_MQandDP=24165,7;ReadPosRankSum=1.036;VarDP=5 GT:AD:DP:GQ:PL:SB 1:2,3,0:5:45:45,0,135:0,2,2,1 +chrX 1073867 . A . . END=1073898 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,178 +chrX 1073899 . G . . END=1073899 GT:DP:GQ:MIN_DP:PL 0:24:0:24:0,0 +chrX 1073900 . T . . END=1073907 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,99 +chrX 1073908 . G . . END=1073908 GT:DP:GQ:MIN_DP:PL 0:32:0:32:0,0 +chrX 1073909 . A . . END=1073916 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,560 +chrX 1073917 . A . . END=1073917 GT:DP:GQ:MIN_DP:PL 0:32:0:32:0,0 +chrX 1073918 . A . . END=1074388 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,237 +chrX 1074389 . A G, 1806.04 . AS_QUALapprox=|1816|0;AS_VarDP=0|57|0;DP=60;QUALapprox=1816;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:1816,0,1816:0,0,29,28 +chrX 1074390 . T . . END=1074474 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1479 +chrX 1074475 . A G, 1549.04 . AS_QUALapprox=|1559|0;AS_VarDP=0|46|0;DP=48;QUALapprox=1559;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=46 GT:AD:DP:GQ:PL:SB 1:0,46,0:46:99:1559,0,1559:0,0,18,28 +chrX 1074476 . A . . END=1074725 GT:DP:GQ:MIN_DP:PL 0:65:65:57:0,65 +chrX 1074726 . G A, 31.04 . AS_QUALapprox=|41|0;AS_VarDP=28|27|0;BaseQRankSum=2.050;DP=56;MQRankSum=0.000;QUALapprox=41;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;ReadPosRankSum=0.665;VarDP=55 GT:AD:DP:GQ:PL:SB 1:28,27,0:55:41:41,0,918:15,13,13,14 +chrX 1074727 . T . . END=1074949 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1419 +chrX 1074950 . G A, 2096.04 . AS_QUALapprox=|2106|0;AS_VarDP=0|50|0;DP=51;QUALapprox=2106;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,50,0:50:99:2106,0,2106:0,0,19,31 +chrX 1074951 . C . . END=1074983 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1463 +chrX 1074984 . G A, 2041.04 . AS_QUALapprox=|2051|0;AS_VarDP=0|49|0;DP=49;QUALapprox=2051;RAW_GT_COUNT=0,0,1;RAW_MQandDP=175401,49;VarDP=49 GT:AD:DP:GQ:PL:SB 1:0,49,0:49:99:2051,0,2051:0,0,21,28 +chrX 1074985 . G . . END=1075132 GT:DP:GQ:MIN_DP:PL 0:46:99:46:0,1184 +chrX 1075133 . C A, 1576.04 . AS_QUALapprox=|1586|0;AS_VarDP=0|36|0;DP=36;QUALapprox=1586;RAW_GT_COUNT=0,0,1;RAW_MQandDP=128401,36;VarDP=36 GT:AD:DP:GQ:PL:SB 1:0,36,0:36:99:1586,0,1586:0,0,14,22 +chrX 1075134 . C . . END=1075134 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,1201 +chrX 1075135 . G A, 1610.04 . AS_QUALapprox=|1620|0;AS_VarDP=0|37|0;DP=37;QUALapprox=1620;RAW_GT_COUNT=0,0,1;RAW_MQandDP=132001,37;VarDP=37 GT:AD:DP:GQ:PL:SB 1:0,37,0:37:99:1620,0,1620:0,0,14,23 +chrX 1075136 . G . . END=1075206 GT:DP:GQ:MIN_DP:PL 0:38:99:38:0,899 +chrX 1075207 . C T, 1427.04 . AS_QUALapprox=|1437|0;AS_VarDP=3|39|0;BaseQRankSum=0.806;DP=42;MQRankSum=0.000;QUALapprox=1437;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151200,42;ReadPosRankSum=1.102;VarDP=42 GT:AD:DP:GQ:PL:SB 1:3,39,0:42:99:1437,0,1500:2,1,21,18 +chrX 1075208 . T . . END=1075298 GT:DP:GQ:MIN_DP:PL 0:43:99:43:0,1157 +chrX 1075299 . A G, 1043.04 . AS_QUALapprox=|1053|0;AS_VarDP=1|48|0;BaseQRankSum=-0.745;DP=50;MQRankSum=0.000;QUALapprox=1053;RAW_GT_COUNT=0,0,1;RAW_MQandDP=178000,50;ReadPosRankSum=-0.177;VarDP=49 GT:AD:DP:GQ:PL:SB 1:1,48,0:49:99:1053,0,1087:1,0,28,20 +chrX 1075300 . G . . END=1075435 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1570 +chrX 1075436 . C T, 1296.04 . AS_QUALapprox=|1306|0;AS_VarDP=4|43|0;BaseQRankSum=1.681;DP=50;MQRankSum=0.000;QUALapprox=1306;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;ReadPosRankSum=-0.668;VarDP=47 GT:AD:DP:GQ:PL:SB 1:4,43,0:47:99:1306,0,1394:0,4,24,19 +chrX 1075437 . T . . END=1076248 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,800 +chrX 1076249 . GAA G,GA, 607.01 . AS_QUALapprox=|617|556|0;AS_VarDP=0|17|15|0;DP=34;QUALapprox=617;RAW_GT_COUNT=0,0,1;RAW_MQandDP=121825,34;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,17,15,0:32:61:617,0,61,536:0,0,17,15 +chrX 1076252 . A . . END=1076279 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,1021 +chrX 1076280 . C T, 1210.04 . AS_QUALapprox=|1220|0;AS_VarDP=0|38|0;DP=40;QUALapprox=1220;RAW_GT_COUNT=0,0,1;RAW_MQandDP=143425,40;VarDP=38 GT:AD:DP:GQ:PL:SB 1:0,38,0:38:99:1220,0,1220:0,0,17,21 +chrX 1076281 . C . . END=1076677 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,1161 +chrX 1076678 . CA C, 1128.01 . AS_QUALapprox=|1138|0;AS_VarDP=0|44|0;DP=56;QUALapprox=1138;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=44 GT:AD:DP:GQ:PL:SB 1:0,44,0:44:99:1138,0,1357:0,0,22,20 +chrX 1076680 . A . . END=1076932 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,1305 +chrX 1076933 . T C, 1506.04 . AS_QUALapprox=|1516|0;AS_VarDP=0|49|0;DP=49;QUALapprox=1516;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=49 GT:AD:DP:GQ:PL:SB 1:0,49,0:49:99:1516,0,1516:0,0,26,23 +chrX 1076934 . G . . END=1077470 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1353 +chrX 1077471 . A G, 2287.04 . AS_QUALapprox=|2297|0;AS_VarDP=0|72|0;DP=73;QUALapprox=2297;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,72,0:72:99:2297,0,2297:0,0,42,30 +chrX 1077472 . C . . END=1077667 GT:DP:GQ:MIN_DP:PL 0:74:99:74:0,1583 +chrX 1077668 . G A, 233.04 . AS_QUALapprox=|243|0;AS_VarDP=22|28|0;BaseQRankSum=0.812;DP=51;MQRankSum=0.000;QUALapprox=243;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;ReadPosRankSum=0.479;VarDP=50 GT:AD:DP:GQ:PL:SB 1:22,28,0:50:99:243,0,952:12,10,16,12 +chrX 1077669 . G . . END=1078129 GT:DP:GQ:MIN_DP:PL 0:55:55:49:0,55 +chrX 1078130 . G GTATATATATATATA,GTGTATATATATATATA, 498.01 . AS_QUALapprox=|0|508|0;AS_VarDP=3|1|6|0;BaseQRankSum=0.000;DP=32;MQRankSum=1.019;QUALapprox=508;RAW_GT_COUNT=0,0,1;RAW_MQandDP=107650,32;ReadPosRankSum=-0.984;VarDP=10 GT:AD:DP:GQ:PL:SB 2:3,1,6,0:10:99:508,636,0,665:3,0,5,2 +chrX 1078131 . T . . END=1078256 GT:DP:GQ:MIN_DP:PL 0:38:99:38:0,471 +chrX 1078257 . T TG, 1446.01 . AS_QUALapprox=|1456|0;AS_VarDP=0|39|0;DP=41;QUALapprox=1456;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147600,41;VarDP=39 GT:AD:DP:GQ:PL:SB 1:0,39,0:39:99:1456,0,1456:0,0,18,21 +chrX 1078258 . G . . END=1079243 GT:DP:GQ:MIN_DP:PL 0:40:36:40:0,36 +chrX 1079244 . C T, 432.04 . AS_QUALapprox=|442|0;AS_VarDP=31|42|0;BaseQRankSum=2.398;DP=75;MQRankSum=-1.204;QUALapprox=442;RAW_GT_COUNT=0,0,1;RAW_MQandDP=269306,75;ReadPosRankSum=-0.056;VarDP=73 GT:AD:DP:GQ:PL:SB 1:31,42,0:73:99:442,0,1409:16,15,14,28 +chrX 1079245 . G . . END=1079464 GT:DP:GQ:MIN_DP:PL 0:59:20:58:0,20 +chrX 1079465 . G C, 3103.04 . AS_QUALapprox=|3113|0;AS_VarDP=0|71|0;DP=72;QUALapprox=3113;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,71,0:71:99:3113,0,3113:0,0,29,42 +chrX 1079466 . C . . END=1079473 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1800 +chrX 1079474 . C G, 3009.04 . AS_QUALapprox=|3019|0;AS_VarDP=0|68|0;DP=69;QUALapprox=3019;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,68,0:68:99:3019,0,3019:0,0,27,41 +chrX 1079475 . C . . END=1079570 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,154 +chrX 1079571 . T C, 74.04 . AS_QUALapprox=|84|0;AS_VarDP=22|32|0;BaseQRankSum=-0.991;DP=55;MQRankSum=0.330;QUALapprox=84;RAW_GT_COUNT=0,0,1;RAW_MQandDP=191441,55;ReadPosRankSum=0.352;VarDP=54 GT:AD:DP:GQ:PL:SB 1:22,32,0:54:84:84,0,1002:16,6,24,8 +chrX 1079572 . G . . END=1079608 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,1593 +chrX 1079609 . G A, 1608.04 . AS_QUALapprox=|1618|0;AS_VarDP=2|52|0;BaseQRankSum=2.431;DP=58;MQRankSum=-0.353;QUALapprox=1618;RAW_GT_COUNT=0,0,1;RAW_MQandDP=202241,58;ReadPosRankSum=1.146;VarDP=54 GT:AD:DP:GQ:PL:SB 1:2,52,0:54:99:1618,0,1667:1,1,39,13 +chrX 1079610 . C . . END=1079850 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1303 +chrX 1079851 . CT C,CTTTT, 410.01 . AS_QUALapprox=|215|420|0;AS_VarDP=0|16|20|0;DP=55;QUALapprox=420;RAW_GT_COUNT=0,0,1;RAW_MQandDP=192065,55;VarDP=36 GT:AD:DP:GQ:PL:SB 2:0,16,20,0:36:99:420,205,0,662:0,0,24,12 +chrX 1079853 . T . . END=1080344 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,987 +chrX 1080345 . A T, 523.04 . AS_QUALapprox=|533|0;AS_VarDP=24|37|0;BaseQRankSum=-0.040;DP=64;MQRankSum=1.794;QUALapprox=533;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226341,64;ReadPosRankSum=0.415;VarDP=61 GT:AD:DP:GQ:PL:SB 1:24,37,0:61:99:533,0,1533:10,14,12,25 +chrX 1080346 . T . . END=1080360 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1800 +chrX 1080361 . C T, 513.04 . AS_QUALapprox=|523|0;AS_VarDP=22|35|0;BaseQRankSum=-0.525;DP=59;MQRankSum=1.825;QUALapprox=523;RAW_GT_COUNT=0,0,1;RAW_MQandDP=209825,59;ReadPosRankSum=0.377;VarDP=57 GT:AD:DP:GQ:PL:SB 1:22,35,0:57:99:523,0,1463:9,13,10,25 +chrX 1080362 . T . . END=1081435 GT:DP:GQ:MIN_DP:PL 0:53:64:51:0,64 +chrX 1081436 . C CAAAA, 477.01 . AS_QUALapprox=|487|0;AS_VarDP=6|18|0;BaseQRankSum=0.601;DP=53;MQRankSum=-1.181;QUALapprox=487;RAW_GT_COUNT=0,0,1;RAW_MQandDP=182013,53;ReadPosRankSum=-0.374;VarDP=24 GT:AD:DP:GQ:PL:SB 1:6,18,0:24:99:487,0,750:5,1,11,7 +chrX 1081437 . A . . END=1081984 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1454 +chrX 1081985 . C T, 2118.04 . AS_QUALapprox=|2128|0;AS_VarDP=0|67|0;DP=68;QUALapprox=2128;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,67,0:67:99:2128,0,2128:0,0,38,29 +chrX 1081986 . C . . END=1082235 GT:DP:GQ:MIN_DP:PL 0:65:64:60:0,64 +chrX 1082236 . C . . END=1082236 GT:DP:GQ:MIN_DP:PL 0:65:0:65:0,0 +chrX 1082237 . G . . END=1082429 GT:DP:GQ:MIN_DP:PL 0:73:99:73:0,269 +chrX 1082430 . C . . END=1082430 GT:DP:GQ:MIN_DP:PL 0:65:8:65:0,8 +chrX 1082431 . G . . END=1082656 GT:DP:GQ:MIN_DP:PL 0:81:99:81:0,1796 +chrX 1082657 . T C, 36.04 . AS_QUALapprox=|46|0;AS_VarDP=44|44|0;BaseQRankSum=0.133;DP=92;MQRankSum=0.000;QUALapprox=46;RAW_GT_COUNT=0,0,1;RAW_MQandDP=331200,92;ReadPosRankSum=-1.695;VarDP=88 GT:AD:DP:GQ:PL:SB 1:44,44,0:88:46:46,0,1469:20,24,24,20 +chrX 1082658 . G . . END=1083441 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,175 +chrX 1083442 . C CAA, 867.01 . AS_QUALapprox=|877|0;AS_VarDP=0|32|0;DP=43;QUALapprox=877;RAW_GT_COUNT=0,0,1;RAW_MQandDP=148404,43;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:877,0,877:0,0,12,20 +chrX 1083443 . A . . END=1083476 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,1310 +chrX 1083477 . G A, 1852.04 . AS_QUALapprox=|1862|0;AS_VarDP=1|56|0;BaseQRankSum=2.935;DP=60;MQRankSum=-0.095;QUALapprox=1862;RAW_GT_COUNT=0,0,1;RAW_MQandDP=213604,60;ReadPosRankSum=0.547;VarDP=57 GT:AD:DP:GQ:PL:SB 1:1,56,0:57:99:1862,0,1871:0,1,27,29 +chrX 1083478 . G . . END=1083656 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1470 +chrX 1083657 . C T, 1507.04 . AS_QUALapprox=|1517|0;AS_VarDP=0|37|0;DP=39;QUALapprox=1517;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140049,39;VarDP=37 GT:AD:DP:GQ:PL:SB 1:0,37,0:37:99:1517,0,1517:0,0,20,17 +chrX 1083658 . G . . END=1083666 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,1072 +chrX 1083667 . CGACCCAGAGGGCTAGAATTGATAGGGTTGTGTCCCAGGGGGCTAAGATTCGTAGGGTTAT C, 1409.01 . AS_QUALapprox=|1419|0;AS_VarDP=1|35|0;DP=36;MQRankSum=4.364;QUALapprox=1419;RAW_GT_COUNT=0,0,1;RAW_MQandDP=127170,36;VarDP=36 GT:AD:DP:GQ:PL:SB 1:1,35,0:36:99:1419,0,1442:0,1,19,16 +chrX 1083728 . G . . END=1083776 GT:DP:GQ:MIN_DP:PL 0:14:99:14:0,199 +chrX 1083777 . T . . END=1083777 GT:DP:GQ:MIN_DP:PL 0:12:0:12:0,0 +chrX 1083778 . G . . END=1083874 GT:DP:GQ:MIN_DP:PL 0:12:90:12:0,90 +chrX 1083875 . T . . END=1083884 GT:DP:GQ:MIN_DP:PL 0:4:0:4:0,0 +chrX 1083885 . G . . END=1083888 GT:DP:GQ:MIN_DP:PL 0:2:25:1:0,25 +chrX 1083889 . C . . END=1083889 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1083890 . T . . END=1083893 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1083894 . A . . END=1083894 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1083895 . T . . END=1083896 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 1083897 . T . . END=1083897 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1083898 . G . . END=1083905 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1083906 . T . . END=1083906 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1083907 . G . . END=1083926 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1083927 . A . . END=1083927 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 1083928 . T . . END=1083936 GT:DP:GQ:MIN_DP:PL 0:2:59:2:0,59 +chrX 1083937 . A . . END=1083937 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 1083938 . A . . END=1083942 GT:DP:GQ:MIN_DP:PL 0:2:20:2:0,20 +chrX 1083943 . C . . END=1083944 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1083945 . G . . END=1083949 GT:DP:GQ:MIN_DP:PL 0:2:59:2:0,59 +chrX 1083950 . A . . END=1083950 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 1083951 . A . . END=1083997 GT:DP:GQ:MIN_DP:PL 0:2:20:1:0,20 +chrX 1083998 . T . . END=1083999 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1084000 . C . . END=1084002 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 1084003 . G . . END=1084003 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1084004 . G . . END=1084033 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1084034 . A . . END=1084197 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1084198 . A . . END=1084203 GT:DP:GQ:MIN_DP:PL 0:2:35:1:0,35 +chrX 1084204 . T . . END=1084204 GT:DP:GQ:MIN_DP:PL 0:3:0:3:0,0 +chrX 1084205 . G . . END=1084240 GT:DP:GQ:MIN_DP:PL 0:9:94:9:0,94 +chrX 1084241 . G C, 253.04 . AS_QUALapprox=|263|0;AS_VarDP=1|9|0;BaseQRankSum=1.036;DP=10;MQRankSum=0.385;QUALapprox=263;RAW_GT_COUNT=0,0,1;RAW_MQandDP=18256,10;ReadPosRankSum=-1.645;VarDP=10 GT:AD:DP:GQ:PL:SB 1:1,9,0:10:99:263,0,288:1,0,5,4 +chrX 1084242 . G . . END=1084322 GT:DP:GQ:MIN_DP:PL 0:16:99:16:0,174 +chrX 1084323 . T . . END=1084323 GT:DP:GQ:MIN_DP:PL 0:11:0:11:0,0 +chrX 1084324 . G . . END=1084360 GT:DP:GQ:MIN_DP:PL 0:9:99:9:0,180 +chrX 1084361 . G . . END=1084361 GT:DP:GQ:MIN_DP:PL 0:8:0:8:0,0 +chrX 1084362 . G . . END=1084368 GT:DP:GQ:MIN_DP:PL 0:5:45:5:0,45 +chrX 1084369 . G . . END=1084433 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1084434 . T . . END=1084437 GT:DP:GQ:MIN_DP:PL 0:2:70:2:0,70 +chrX 1084438 . G . . END=1084438 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 1084439 . T . . END=1084477 GT:DP:GQ:MIN_DP:PL 0:6:70:6:0,70 +chrX 1084478 . G . . END=1084478 GT:DP:GQ:MIN_DP:PL 0:9:0:9:0,0 +chrX 1084479 . G . . END=1084560 GT:DP:GQ:MIN_DP:PL 0:20:45:20:0,45 +chrX 1084561 . A . . END=1084561 GT:DP:GQ:MIN_DP:PL 0:26:0:26:0,0 +chrX 1084562 . A . . END=1084897 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,715 +chrX 1084898 . T C, 3139.04 . AS_QUALapprox=|3149|0;AS_VarDP=0|71|0;DP=71;QUALapprox=3149;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,71,0:71:99:3149,0,3149:0,0,38,33 +chrX 1084899 . T A, 3139.04 . AS_QUALapprox=|3149|0;AS_VarDP=0|71|0;DP=73;QUALapprox=3149;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,71,0:71:99:3149,0,3149:0,0,38,33 +chrX 1084900 . A . . END=1085115 GT:DP:GQ:MIN_DP:PL 0:79:99:79:0,1705 +chrX 1085116 . CT C, 1316.01 . AS_QUALapprox=|1326|0;AS_VarDP=1|48|0;BaseQRankSum=3.429;DP=57;MQRankSum=0.000;QUALapprox=1326;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;ReadPosRankSum=-0.955;VarDP=49 GT:AD:DP:GQ:PL:SB 1:1,48,0:49:99:1326,0,1354:0,1,16,32 +chrX 1085118 . T . . END=1085237 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1740 +chrX 1085238 . T C, 1825.04 . AS_QUALapprox=|1835|0;AS_VarDP=0|59|0;DP=61;QUALapprox=1835;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:1835,0,1835:0,0,33,26 +chrX 1085239 . G . . END=1085315 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1752 +chrX 1085316 . A G, 1796.04 . AS_QUALapprox=|1806|0;AS_VarDP=0|57|0;DP=58;QUALapprox=1806;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:1806,0,1806:0,0,28,29 +chrX 1085317 . A . . END=1085651 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1707 +chrX 1085652 . G A, 2244.04 . AS_QUALapprox=|2254|0;AS_VarDP=0|66|0;DP=69;QUALapprox=2254;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=66 GT:AD:DP:GQ:PL:SB 1:0,66,0:66:99:2254,0,2254:0,0,36,30 +chrX 1085653 . T . . END=1085707 GT:DP:GQ:MIN_DP:PL 0:76:99:76:0,1800 +chrX 1085708 . G C, 3172.04 . AS_QUALapprox=|3182|0;AS_VarDP=0|74|0;DP=75;QUALapprox=3182;RAW_GT_COUNT=0,0,1;RAW_MQandDP=270000,75;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,74,0:74:99:3182,0,3182:0,0,43,31 +chrX 1085709 . T . . END=1085723 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1800 +chrX 1085724 . C A, 2963.04 . AS_QUALapprox=|2973|0;AS_VarDP=0|68|0;DP=72;QUALapprox=2973;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,68,0:68:99:2973,0,2973:0,0,41,27 +chrX 1085725 . T . . END=1085801 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,315 +chrX 1085802 . C CACCCAAAGGGCTGAATTCATAGGGTCGTGACTCATTGTGCTGGATTTGCTGAATTTTGACTCAGAGGGCTAAGAGTTGTAGGGTTATGCCTTATAAAGCTAGATTGATTGTGTTGTGACCCATGGGGCTGAGATTTATAGGGTTGCG, 4762.01 . AS_QUALapprox=|4772|0;AS_VarDP=14|117|0;BaseQRankSum=0.146;DP=133;MQRankSum=-1.850;QUALapprox=4772;RAW_GT_COUNT=0,0,1;RAW_MQandDP=443933,133;ReadPosRankSum=-1.218;VarDP=131 GT:AD:DP:GQ:PL:SB 1:14,117,0:131:99:4772,0,4849:9,5,61,56 +chrX 1085803 . A . . END=1085820 GT:DP:GQ:MIN_DP:PL 0:127:99:127:0,1800 +chrX 1085821 . G . . END=1085821 GT:DP:GQ:MIN_DP:PL 0:104:0:104:0,0 +chrX 1085822 . T . . END=1085828 GT:DP:GQ:MIN_DP:PL 0:133:99:133:0,1800 +chrX 1085829 . A . . END=1085829 GT:DP:GQ:MIN_DP:PL 0:107:0:107:0,0 +chrX 1085830 . T . . END=1086779 GT:DP:GQ:MIN_DP:PL 0:132:49:132:0,49 +chrX 1086780 . G A, 1908.04 . AS_QUALapprox=|1918|0;AS_VarDP=0|59|0;DP=59;QUALapprox=1918;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:1918,0,1918:0,0,31,28 +chrX 1086781 . T . . END=1087089 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1534 +chrX 1087090 . C T, 1762.04 . AS_QUALapprox=|1772|0;AS_VarDP=0|53|0;DP=55;QUALapprox=1772;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=53 GT:AD:DP:GQ:PL:SB 1:0,53,0:53:99:1772,0,1772:0,0,31,22 +chrX 1087091 . A . . END=1087226 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1641 +chrX 1087227 . G C, 232.04 . AS_QUALapprox=|242|0;AS_VarDP=26|31|0;BaseQRankSum=2.127;DP=58;MQRankSum=0.000;QUALapprox=242;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;ReadPosRankSum=-1.154;VarDP=57 GT:AD:DP:GQ:PL:SB 1:26,31,0:57:99:242,0,1057:15,11,17,14 +chrX 1087228 . A . . END=1087918 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1125 +chrX 1087919 . T C, 1901.04 . AS_QUALapprox=|1911|0;AS_VarDP=0|57|0;DP=59;QUALapprox=1911;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:1911,0,1911:0,0,29,28 +chrX 1087920 . G . . END=1088149 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,525 +chrX 1088150 . G A, 352.04 . AS_QUALapprox=|362|0;AS_VarDP=39|48|0;BaseQRankSum=0.840;DP=93;MQRankSum=2.639;QUALapprox=362;RAW_GT_COUNT=0,0,1;RAW_MQandDP=308227,93;ReadPosRankSum=-0.023;VarDP=87 GT:AD:DP:GQ:PL:SB 1:39,48,0:87:99:362,0,2020:17,22,23,25 +chrX 1088151 . G . . END=1088172 GT:DP:GQ:MIN_DP:PL 0:84:99:84:0,1800 +chrX 1088173 . A AG, 336.01 . AS_QUALapprox=|346|0;AS_VarDP=36|44|0;BaseQRankSum=0.871;DP=85;MQRankSum=2.365;QUALapprox=346;RAW_GT_COUNT=0,0,1;RAW_MQandDP=282289,85;ReadPosRankSum=0.735;VarDP=80 GT:AD:DP:GQ:PL:SB 1:36,44,0:80:99:346,0,1921:16,20,21,23 +chrX 1088174 . A . . END=1088174 GT:DP:GQ:MIN_DP:PL 0:73:99:73:0,1800 +chrX 1088175 . A T, 3406.04 . AS_QUALapprox=|3416|0;AS_VarDP=0|79|0;DP=85;QUALapprox=3416;RAW_GT_COUNT=0,0,1;RAW_MQandDP=282289,85;VarDP=79 GT:AD:DP:GQ:PL:SB 1:0,79,0:79:99:3416,0,3416:0,0,36,43 +chrX 1088176 . T . . END=1088221 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,386 +chrX 1088222 . G A, 602.04 . AS_QUALapprox=|612|0;AS_VarDP=19|34|0;BaseQRankSum=-1.578;DP=57;MQRankSum=4.686;QUALapprox=612;RAW_GT_COUNT=0,0,1;RAW_MQandDP=170824,57;ReadPosRankSum=1.540;VarDP=53 GT:AD:DP:GQ:PL:SB 1:19,34,0:53:99:612,0,1467:14,5,17,17 +chrX 1088223 . A . . END=1088237 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,591 +chrX 1088238 . A T, 2226.04 . AS_QUALapprox=|2236|0;AS_VarDP=0|52|0;DP=55;QUALapprox=2236;RAW_GT_COUNT=0,0,1;RAW_MQandDP=168308,55;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:2236,0,2236:0,0,29,23 +chrX 1088239 . C . . END=1088320 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,456 +chrX 1088321 . C T, 422.04 . AS_QUALapprox=|432|0;AS_VarDP=36|43|0;BaseQRankSum=0.468;DP=83;MQRankSum=-2.930;QUALapprox=432;RAW_GT_COUNT=0,0,1;RAW_MQandDP=258296,83;ReadPosRankSum=1.575;VarDP=79 GT:AD:DP:GQ:PL:SB 1:36,43,0:79:99:432,0,1837:19,17,24,19 +chrX 1088322 . G . . END=1088333 GT:DP:GQ:MIN_DP:PL 0:79:99:79:0,1800 +chrX 1088334 . G A, 585.04 . AS_QUALapprox=|595|0;AS_VarDP=40|51|0;BaseQRankSum=0.731;DP=96;MQRankSum=-2.562;QUALapprox=595;RAW_GT_COUNT=0,0,1;RAW_MQandDP=308745,96;ReadPosRankSum=1.740;VarDP=91 GT:AD:DP:GQ:PL:SB 1:40,51,0:91:99:595,0,2143:22,18,28,23 +chrX 1088335 . G . . END=1088341 GT:DP:GQ:MIN_DP:PL 0:87:99:87:0,1800 +chrX 1088342 . T A, 1084.04 . AS_QUALapprox=|1094|0;AS_VarDP=32|57|0;BaseQRankSum=0.683;DP=95;MQRankSum=-2.152;QUALapprox=1094;RAW_GT_COUNT=0,0,1;RAW_MQandDP=305829,95;ReadPosRankSum=-0.437;VarDP=89 GT:AD:DP:GQ:PL:SB 1:32,57,0:89:99:1094,0,2339:17,15,31,26 +chrX 1088343 . T . . END=1088494 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1073 +chrX 1088495 . C CT, 612.01 . AS_QUALapprox=|622|0;AS_VarDP=0|26|0;DP=40;QUALapprox=622;RAW_GT_COUNT=0,0,1;RAW_MQandDP=137998,40;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:622,0,622:0,0,10,16 +chrX 1088496 . T . . END=1089187 GT:DP:GQ:MIN_DP:PL 0:46:99:46:0,168 +chrX 1089188 . G T, 262.04 . AS_QUALapprox=|272|0;AS_VarDP=22|31|0;BaseQRankSum=0.179;DP=55;MQRankSum=0.000;QUALapprox=272;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;ReadPosRankSum=-0.361;VarDP=53 GT:AD:DP:GQ:PL:SB 1:22,31,0:53:99:272,0,987:10,12,17,14 +chrX 1089189 . A . . END=1090775 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,234 +chrX 1090776 . C . . END=1090776 GT:DP:GQ:MIN_DP:PL 0:63:10:63:0,10 +chrX 1090777 . G . . END=1091196 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1666 +chrX 1091197 . T C, 4.10 . AS_QUALapprox=|14|0;AS_VarDP=30|30|0;BaseQRankSum=0.051;DP=65;MQRankSum=0.000;QUALapprox=14;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230841,65;ReadPosRankSum=-0.414;VarDP=60 GT:AD:DP:GQ:PL:SB 1:30,30,0:60:14:14,0,1022:17,13,20,10 +chrX 1091198 . G . . END=1091400 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1800 +chrX 1091401 . A G, 334.04 . AS_QUALapprox=|344|0;AS_VarDP=24|38|0;BaseQRankSum=-2.111;DP=64;MQRankSum=1.291;QUALapprox=344;RAW_GT_COUNT=0,0,1;RAW_MQandDP=228400,64;ReadPosRankSum=1.207;VarDP=62 GT:AD:DP:GQ:PL:SB 1:24,38,0:62:99:344,0,1148:11,13,23,15 +chrX 1091402 . G . . END=1092393 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,302 +chrX 1092394 . C . . END=1092528 GT:DP:GQ:MIN_DP:PL 0:70:0:70:0,0 +chrX 1092529 . C . . END=1092555 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,900 +chrX 1092556 . T C, 697.04 . AS_QUALapprox=|707|0;AS_VarDP=19|37|0;BaseQRankSum=0.022;DP=74;MQRankSum=-1.644;QUALapprox=707;RAW_GT_COUNT=0,0,1;RAW_MQandDP=258135,74;ReadPosRankSum=-0.329;VarDP=56 GT:AD:DP:GQ:PL:SB 1:19,37,0:56:99:707,0,1653:10,9,15,22 +chrX 1092557 . G . . END=1093084 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1177 +chrX 1093085 . TA T, 32.01 . AS_QUALapprox=|42|0;AS_VarDP=16|17|0;BaseQRankSum=-0.886;DP=54;MQRankSum=1.524;QUALapprox=42;RAW_GT_COUNT=0,0,1;RAW_MQandDP=186954,54;ReadPosRankSum=-0.179;VarDP=33 GT:AD:DP:GQ:PL:SB 1:16,17,0:33:42:42,0,356:9,7,8,9 +chrX 1093087 . A . . END=1093453 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1354 +chrX 1093454 . A G, 36.04 . AS_QUALapprox=|46|0;AS_VarDP=25|27|0;BaseQRankSum=-0.149;DP=52;MQRankSum=0.000;QUALapprox=46;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;ReadPosRankSum=0.231;VarDP=52 GT:AD:DP:GQ:PL:SB 1:25,27,0:52:46:46,0,1103:12,13,13,14 +chrX 1093455 . C . . END=1093475 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,1543 +chrX 1093476 . C T, 26.04 . AS_QUALapprox=|36|0;AS_VarDP=27|28|0;BaseQRankSum=0.077;DP=55;MQRankSum=0.000;QUALapprox=36;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;ReadPosRankSum=0.848;VarDP=55 GT:AD:DP:GQ:PL:SB 1:27,28,0:55:36:36,0,1163:16,11,13,15 +chrX 1093477 . G . . END=1093540 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,1380 +chrX 1093541 . GA G, 21 . AS_QUALapprox=|31|0;AS_VarDP=23|23|0;BaseQRankSum=0.501;DP=53;MQRankSum=0.000;QUALapprox=31;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;ReadPosRankSum=-0.637;VarDP=46 GT:AD:DP:GQ:PL:SB 1:23,23,0:46:31:31,0,642:16,7,14,9 +chrX 1093543 . A . . END=1094543 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1488 +chrX 1094544 . T TCA, 27 . AS_QUALapprox=|37|0;AS_VarDP=26|28|0;BaseQRankSum=-0.684;DP=70;MQRankSum=0.000;QUALapprox=37;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;ReadPosRankSum=0.225;VarDP=54 GT:AD:DP:GQ:PL:SB 1:26,28,0:54:37:37,0,1002:7,19,13,15 +chrX 1094545 . C . . END=1094713 GT:DP:GQ:MIN_DP:PL 0:56:49:55:0,49 +chrX 1094714 . T C, 54.04 . AS_QUALapprox=|64|0;AS_VarDP=27|30|0;BaseQRankSum=-1.075;DP=59;MQRankSum=0.000;QUALapprox=64;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;ReadPosRankSum=-0.064;VarDP=57 GT:AD:DP:GQ:PL:SB 1:27,30,0:57:64:64,0,963:17,10,15,15 +chrX 1094715 . C . . END=1095292 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1448 +chrX 1095293 . C T, 1895.04 . AS_QUALapprox=|1905|0;AS_VarDP=0|56|0;DP=62;QUALapprox=1905;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,56,0:56:99:1905,0,1905:0,0,27,29 +chrX 1095294 . T . . END=1095594 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,521 +chrX 1095595 . A G, 2089.04 . AS_QUALapprox=|2099|0;AS_VarDP=0|66|0;DP=69;QUALapprox=2099;RAW_GT_COUNT=0,0,1;RAW_MQandDP=246916,69;VarDP=66 GT:AD:DP:GQ:PL:SB 1:0,66,0:66:99:2099,0,2099:0,0,36,30 +chrX 1095596 . T . . END=1095742 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,1137 +chrX 1095743 . G A, 1508.04 . AS_QUALapprox=|1518|0;AS_VarDP=0|46|0;DP=49;QUALapprox=1518;RAW_GT_COUNT=0,0,1;RAW_MQandDP=170901,49;VarDP=46 GT:AD:DP:GQ:PL:SB 1:0,46,0:46:99:1518,0,1518:0,0,23,23 +chrX 1095744 . G . . END=1096087 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1449 +chrX 1096088 . G A, 1719.04 . AS_QUALapprox=|1729|0;AS_VarDP=0|52|0;DP=55;QUALapprox=1729;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:1729,0,1729:0,0,34,18 +chrX 1096089 . G . . END=1096290 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1707 +chrX 1096291 . G A, 2778.04 . AS_QUALapprox=|2788|0;AS_VarDP=0|69|0;DP=73;QUALapprox=2788;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,69,0:69:99:2788,0,2788:0,0,33,36 +chrX 1096292 . G . . END=1096297 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1800 +chrX 1096298 . G A, 433.04 . AS_QUALapprox=|443|0;AS_VarDP=29|42|0;BaseQRankSum=0.244;DP=72;MQRankSum=0.000;QUALapprox=443;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;ReadPosRankSum=0.544;VarDP=71 GT:AD:DP:GQ:PL:SB 1:29,42,0:71:99:443,0,1410:15,14,20,22 +chrX 1096299 . G . . END=1096606 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,485 +chrX 1096607 . C T, 1702.04 . AS_QUALapprox=|1712|0;AS_VarDP=0|51|0;DP=51;QUALapprox=1712;RAW_GT_COUNT=0,0,1;RAW_MQandDP=181548,51;VarDP=51 GT:AD:DP:GQ:PL:SB 1:0,51,0:51:99:1712,0,1712:0,0,29,22 +chrX 1096608 . T . . END=1096899 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1371 +chrX 1096900 . C T, 2194.04 . AS_QUALapprox=|2204|0;AS_VarDP=0|67|0;DP=68;QUALapprox=2204;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244225,68;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,67,0:67:99:2204,0,2204:0,0,34,33 +chrX 1096901 . A . . END=1096982 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1800 +chrX 1096983 . A G, 2059.04 . AS_QUALapprox=|2069|0;AS_VarDP=0|65|0;DP=74;QUALapprox=2069;RAW_GT_COUNT=0,0,1;RAW_MQandDP=265825,74;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,65,0:65:99:2069,0,2069:0,0,45,20 +chrX 1096984 . T . . END=1097312 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1706 +chrX 1097313 . A G,T, 1409.04 . AS_QUALapprox=|1419|44|0;AS_VarDP=0|46|2|0;DP=52;QUALapprox=1419;RAW_GT_COUNT=0,0,1;RAW_MQandDP=184453,52;VarDP=48 GT:AD:DP:GQ:PL:SB 1:0,46,2,0:48:99:1419,0,1375,1419:0,0,24,24 +chrX 1097314 . G . . END=1098078 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1518 +chrX 1098079 . A ATT, 85.01 . AS_QUALapprox=|95|0;AS_VarDP=20|25|0;BaseQRankSum=-1.755;DP=61;MQRankSum=-0.850;QUALapprox=95;RAW_GT_COUNT=0,0,1;RAW_MQandDP=217025,61;ReadPosRankSum=-0.651;VarDP=45 GT:AD:DP:GQ:PL:SB 1:20,25,0:45:95:95,0,812:8,12,13,12 +chrX 1098080 . T . . END=1098643 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1421 +chrX 1098644 . C G, 1617.04 . AS_QUALapprox=|1627|0;AS_VarDP=0|51|0;DP=51;QUALapprox=1627;RAW_GT_COUNT=0,0,1;RAW_MQandDP=181305,51;VarDP=51 GT:AD:DP:GQ:PL:SB 1:0,51,0:51:99:1627,0,1627:0,0,27,24 +chrX 1098645 . A . . END=1098713 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,1381 +chrX 1098714 . C G, 1472.04 . AS_QUALapprox=|1482|0;AS_VarDP=0|45|0;DP=46;QUALapprox=1482;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;VarDP=45 GT:AD:DP:GQ:PL:SB 1:0,45,0:45:99:1482,0,1482:0,0,24,21 +chrX 1098715 . C . . END=1098784 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,1400 +chrX 1098785 . G A, 1721.04 . AS_QUALapprox=|1731|0;AS_VarDP=0|52|0;DP=55;QUALapprox=1731;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:1731,0,1731:0,0,33,19 +chrX 1098786 . A . . END=1100146 GT:DP:GQ:MIN_DP:PL 0:65:47:53:0,47 +chrX 1100147 . A G, 120.04 . AS_QUALapprox=|130|0;AS_VarDP=21|27|0;BaseQRankSum=0.112;DP=48;MQRankSum=0.000;QUALapprox=130;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;ReadPosRankSum=1.487;VarDP=48 GT:AD:DP:GQ:PL:SB 1:21,27,0:48:99:130,0,779:8,13,15,12 +chrX 1100148 . G . . END=1100374 GT:DP:GQ:MIN_DP:PL 0:47:99:47:0,769 +chrX 1100375 . T C, 151.04 . AS_QUALapprox=|161|0;AS_VarDP=14|22|0;BaseQRankSum=-0.666;DP=38;MQRankSum=-0.741;QUALapprox=161;RAW_GT_COUNT=0,0,1;RAW_MQandDP=134041,38;ReadPosRankSum=1.120;VarDP=36 GT:AD:DP:GQ:PL:SB 1:14,22,0:36:99:161,0,573:10,4,12,10 +chrX 1100376 . G . . END=1103445 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,189 +chrX 1103446 . A G, 191.04 . AS_QUALapprox=|201|0;AS_VarDP=24|35|0;BaseQRankSum=-3.157;DP=62;MQRankSum=0.000;QUALapprox=201;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;ReadPosRankSum=0.841;VarDP=59 GT:AD:DP:GQ:PL:SB 1:24,35,0:59:99:201,0,1036:12,12,22,13 +chrX 1103447 . A . . END=1103649 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1800 +chrX 1103650 . C . . END=1103650 GT:DP:GQ:MIN_DP:PL 0:78:0:78:0,0 +chrX 1103651 . C . . END=1103775 GT:DP:GQ:MIN_DP:PL 0:81:25:78:0,25 +chrX 1103776 . A C, 2543.04 . AS_QUALapprox=|2553|0;AS_VarDP=0|81|0;DP=81;QUALapprox=2553;RAW_GT_COUNT=0,0,1;RAW_MQandDP=286846,81;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,81,0:81:99:2553,0,2553:0,0,41,40 +chrX 1103777 . C . . END=1104040 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1686 +chrX 1104041 . C G, 1919.04 . AS_QUALapprox=|1929|0;AS_VarDP=0|59|0;DP=63;QUALapprox=1929;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226336,63;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:1929,0,1929:0,0,18,41 +chrX 1104042 . G . . END=1104391 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1653 +chrX 1104392 . A G, 270.04 . AS_QUALapprox=|280|0;AS_VarDP=31|37|0;BaseQRankSum=0.427;DP=71;MQRankSum=0.147;QUALapprox=280;RAW_GT_COUNT=0,0,1;RAW_MQandDP=254450,71;ReadPosRankSum=0.240;VarDP=68 GT:AD:DP:GQ:PL:SB 1:31,37,0:68:99:280,0,1251:16,15,21,16 +chrX 1104393 . C . . END=1104696 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1777 +chrX 1104697 . A G, 1756.04 . AS_QUALapprox=|1766|0;AS_VarDP=1|56|0;BaseQRankSum=2.436;DP=61;MQRankSum=0.000;QUALapprox=1766;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;ReadPosRankSum=0.791;VarDP=57 GT:AD:DP:GQ:PL:SB 1:1,56,0:57:99:1766,0,1776:1,0,31,25 +chrX 1104698 . G . . END=1104815 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1791 +chrX 1104816 . TATAA T, 3376.01 . AS_QUALapprox=|3386|0;AS_VarDP=1|77|0;BaseQRankSum=-0.434;DP=82;MQRankSum=0.000;QUALapprox=3386;RAW_GT_COUNT=0,0,1;RAW_MQandDP=295200,82;ReadPosRankSum=0.511;VarDP=78 GT:AD:DP:GQ:PL:SB 1:1,77,0:78:99:3386,0,3431:0,1,38,39 +chrX 1104821 . A . . END=1105098 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1484 +chrX 1105099 . A G, 61.04 . AS_QUALapprox=|71|0;AS_VarDP=31|37|0;BaseQRankSum=-3.018;DP=71;MQRankSum=1.122;QUALapprox=71;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255025,71;ReadPosRankSum=0.443;VarDP=68 GT:AD:DP:GQ:PL:SB 1:31,37,0:68:71:71,0,1129:17,14,23,14 +chrX 1105100 . G . . END=1105517 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,490 +chrX 1105518 . G A, 294.04 . AS_QUALapprox=|304|0;AS_VarDP=27|38|0;BaseQRankSum=-0.938;DP=68;MQRankSum=0.000;QUALapprox=304;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;ReadPosRankSum=-0.360;VarDP=65 GT:AD:DP:GQ:PL:SB 1:27,38,0:65:99:304,0,1200:11,16,25,13 +chrX 1105519 . A . . END=1106049 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,213 +chrX 1106050 . G C, 1767.04 . AS_QUALapprox=|1777|0;AS_VarDP=0|41|0;DP=42;QUALapprox=1777;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151200,42;VarDP=41 GT:AD:DP:GQ:PL:SB 1:0,41,0:41:99:1777,0,1777:0,0,23,18 +chrX 1106051 . A . . END=1106056 GT:DP:GQ:MIN_DP:PL 0:39:99:39:0,1241 +chrX 1106057 . AGAG A, 1698.01 . AS_QUALapprox=|1708|0;AS_VarDP=0|39|0;DP=40;QUALapprox=1708;RAW_GT_COUNT=0,0,1;RAW_MQandDP=144000,40;VarDP=39 GT:AD:DP:GQ:PL:SB 1:0,39,0:39:99:1708,0,1708:0,0,22,17 +chrX 1106061 . G . . END=1106378 GT:DP:GQ:MIN_DP:PL 0:97:99:97:0,722 +chrX 1106379 . A AAG, 1885.01 . AS_QUALapprox=|1895|0;AS_VarDP=0|47|0;DP=63;QUALapprox=1895;RAW_GT_COUNT=0,0,1;RAW_MQandDP=220899,63;VarDP=47 GT:AD:DP:GQ:PL:SB 1:0,47,0:47:99:1895,0,2135:0,0,22,25 +chrX 1106380 . A . . END=1106603 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,189 +chrX 1106604 . A AAGAG, 67.01 . AS_QUALapprox=|77|0;AS_VarDP=14|16|0;BaseQRankSum=0.804;DP=40;MQRankSum=-0.869;QUALapprox=77;RAW_GT_COUNT=0,0,1;RAW_MQandDP=142801,40;ReadPosRankSum=-0.937;VarDP=30 GT:AD:DP:GQ:PL:SB 1:14,16,0:30:77:77,0,662:9,5,9,7 +chrX 1106605 . A . . END=1107114 GT:DP:GQ:MIN_DP:PL 0:43:60:42:0,60 +chrX 1107115 . C T, 94.04 . AS_QUALapprox=|104|0;AS_VarDP=21|24|0;BaseQRankSum=0.193;DP=46;MQRankSum=0.000;QUALapprox=104;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;ReadPosRankSum=-0.922;VarDP=45 GT:AD:DP:GQ:PL:SB 1:21,24,0:45:99:104,0,804:12,9,11,13 +chrX 1107116 . G . . END=1107196 GT:DP:GQ:MIN_DP:PL 0:43:99:43:0,1236 +chrX 1107197 . T G, 183.04 . AS_QUALapprox=|193|0;AS_VarDP=22|29|0;BaseQRankSum=-2.012;DP=51;MQRankSum=0.000;QUALapprox=193;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;ReadPosRankSum=-1.027;VarDP=51 GT:AD:DP:GQ:PL:SB 1:22,29,0:51:99:193,0,958:15,7,12,17 +chrX 1107198 . G . . END=1107892 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1632 +chrX 1107893 . G C, 2491.04 . AS_QUALapprox=|2501|0;AS_VarDP=0|76|0;DP=76;QUALapprox=2501;RAW_GT_COUNT=0,0,1;RAW_MQandDP=273025,76;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,76,0:76:99:2501,0,2501:0,0,45,31 +chrX 1107894 . T . . END=1107921 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1800 +chrX 1107922 . G C, 2148.04 . AS_QUALapprox=|2158|0;AS_VarDP=0|68|0;DP=70;QUALapprox=2158;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,68,0:68:99:2158,0,2158:0,0,36,32 +chrX 1107923 . A . . END=1109011 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1291 +chrX 1109012 . G A, 2380.04 . AS_QUALapprox=|2390|0;AS_VarDP=0|55|0;DP=57;QUALapprox=2390;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:2390,0,2390:0,0,34,21 +chrX 1109013 . G . . END=1109018 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1732 +chrX 1109019 . G C, 2380.04 . AS_QUALapprox=|2390|0;AS_VarDP=0|55|0;DP=55;QUALapprox=2390;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:2390,0,2390:0,0,33,22 +chrX 1109020 . A . . END=1109094 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1548 +chrX 1109095 . C T, 2182.04 . AS_QUALapprox=|2192|0;AS_VarDP=0|56|0;DP=59;QUALapprox=2192;RAW_GT_COUNT=0,0,1;RAW_MQandDP=211009,59;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,56,0:56:99:2192,0,2192:0,0,31,25 +chrX 1109096 . G . . END=1109476 GT:DP:GQ:MIN_DP:PL 0:56:35:50:0,35 +chrX 1109477 . G . . END=1109477 GT:DP:GQ:MIN_DP:PL 0:32:0:32:0,0 +chrX 1109478 . G . . END=1109607 GT:DP:GQ:MIN_DP:PL 0:26:35:25:0,35 +chrX 1109608 . GGGAA G, 419.01 . AS_QUALapprox=|429|0;AS_VarDP=15|26|0;BaseQRankSum=0.235;DP=45;MQRankSum=1.367;QUALapprox=429;RAW_GT_COUNT=0,0,1;RAW_MQandDP=159025,45;ReadPosRankSum=-0.432;VarDP=41 GT:AD:DP:GQ:PL:SB 1:15,26,0:41:99:429,0,1093:9,6,10,16 +chrX 1109613 . G . . END=1109621 GT:DP:GQ:MIN_DP:PL 0:41:99:41:0,1255 +chrX 1109622 . T G,TGAAAGGAAAGGAAGGAAAG, 1493.04 . AS_QUALapprox=|1503|848|0;AS_VarDP=0|28|14|0;DP=48;QUALapprox=1503;RAW_GT_COUNT=0,0,1;RAW_MQandDP=167009,48;VarDP=42 GT:AD:DP:GQ:PL:SB 1:0,28,14,0:42:99:1503,0,655,1357:0,0,20,22 +chrX 1109623 . G . . END=1110350 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,209 +chrX 1110351 . GTC G, 341.01 . AS_QUALapprox=|351|0;AS_VarDP=24|33|0;BaseQRankSum=2.052;DP=66;MQRankSum=0.000;QUALapprox=351;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;ReadPosRankSum=-0.889;VarDP=57 GT:AD:DP:GQ:PL:SB 1:24,33,0:57:99:351,0,1526:11,13,18,15 +chrX 1110354 . T . . END=1110506 GT:DP:GQ:MIN_DP:PL 0:63:45:63:0,45 +chrX 1110507 . A . . END=1110508 GT:DP:GQ:MIN_DP:PL 0:52:0:52:0,0 +chrX 1110509 . A ATGCATGCTAGTGTGTGTGTATGTAGGCATCTGTGTGTACGCATGCTAGTATATGTGAACACACGTGTATGTGCATGAATACTAGTGTGTTTATGTATGTGTGTATGTAGGCGTCTGTGTGTATGCATCTGTATCTGTGCATGCATGCTAGTGTGTTTGTGTGCACATGGGTG,ATGCATGCTAGTGTGTGTGTATGTAGGCATCTGTGTGTATGCATGCTAGTATATGTGAACACACGTGTATGTGCATGAATACTAGTGTGTTTATGTATGTGTGTATGTAGGCGTCTGTGTGTATGCATCTGTATCTGTGCATGCATGCTAGTGTGTTTGTGTGCACATGGGTG, 2675.01 . AS_QUALapprox=|2566|2685|0;AS_VarDP=0|14|17|0;DP=92;QUALapprox=2685;RAW_GT_COUNT=0,0,1;RAW_MQandDP=317670,92;VarDP=31 GT:AD:DP:GQ:PL:SB 2:0,14,17,0:31:99:2685,119,0,2756:0,0,10,21 +chrX 1110510 . T . . END=1110561 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,832 +chrX 1110562 . T C, 281.04 . AS_QUALapprox=|291|0;AS_VarDP=20|31|0;BaseQRankSum=-1.029;DP=64;MQRankSum=0.000;QUALapprox=291;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;ReadPosRankSum=1.573;VarDP=51 GT:AD:DP:GQ:PL:SB 1:20,31,0:51:99:291,0,1316:15,5,19,12 +chrX 1110563 . A . . END=1110979 GT:DP:GQ:MIN_DP:PL 0:75:99:75:0,1062 +chrX 1110980 . G A, 144.04 . AS_QUALapprox=|154|0;AS_VarDP=27|33|0;BaseQRankSum=-0.820;DP=73;MQRankSum=0.000;QUALapprox=154;RAW_GT_COUNT=0,0,1;RAW_MQandDP=260289,73;ReadPosRankSum=-0.401;VarDP=60 GT:AD:DP:GQ:PL:SB 1:27,33,0:60:99:154,0,1449:7,20,13,20 +chrX 1110981 . T . . END=1111649 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1359 +chrX 1111650 . G GGA, 2173.01 . AS_QUALapprox=|2183|0;AS_VarDP=0|56|0;DP=63;QUALapprox=2183;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,56,0:56:99:2183,0,2184:0,0,33,23 +chrX 1111651 . G . . END=1112282 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,769 +chrX 1112283 . A G, 1984.04 . AS_QUALapprox=|1994|0;AS_VarDP=0|62|0;DP=66;QUALapprox=1994;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:1994,0,1994:0,0,32,30 +chrX 1112284 . C . . END=1112296 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1800 +chrX 1112297 . T C, 2065.04 . AS_QUALapprox=|2075|0;AS_VarDP=1|64|0;BaseQRankSum=2.038;DP=70;MQRankSum=0.000;QUALapprox=2075;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;ReadPosRankSum=1.733;VarDP=65 GT:AD:DP:GQ:PL:SB 1:1,64,0:65:99:2075,0,2481:1,0,32,29 +chrX 1112298 . A . . END=1112748 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1355 +chrX 1112749 . G A, 104.04 . AS_QUALapprox=|114|0;AS_VarDP=20|23|0;BaseQRankSum=0.622;DP=45;MQRankSum=0.000;QUALapprox=114;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162000,45;ReadPosRankSum=1.681;VarDP=43 GT:AD:DP:GQ:PL:SB 1:20,23,0:43:99:114,0,759:10,10,13,10 +chrX 1112750 . C . . END=1113021 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,1363 +chrX 1113022 . G A, 133.04 . AS_QUALapprox=|143|0;AS_VarDP=24|29|0;BaseQRankSum=-0.421;DP=55;MQRankSum=1.137;QUALapprox=143;RAW_GT_COUNT=0,0,1;RAW_MQandDP=197209,55;ReadPosRankSum=0.554;VarDP=53 GT:AD:DP:GQ:PL:SB 1:24,29,0:53:99:143,0,901:8,16,13,16 +chrX 1113023 . T . . END=1113048 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,1553 +chrX 1113049 . C G, 134.04 . AS_QUALapprox=|144|0;AS_VarDP=21|25|0;BaseQRankSum=0.016;DP=48;MQRankSum=1.135;QUALapprox=144;RAW_GT_COUNT=0,0,1;RAW_MQandDP=170618,48;ReadPosRankSum=-1.104;VarDP=46 GT:AD:DP:GQ:PL:SB 1:21,25,0:46:99:144,0,819:5,16,9,16 +chrX 1113050 . A . . END=1113115 GT:DP:GQ:MIN_DP:PL 0:43:99:43:0,1176 +chrX 1113116 . G A, 214.04 . AS_QUALapprox=|224|0;AS_VarDP=19|24|0;BaseQRankSum=2.664;DP=45;MQRankSum=1.171;QUALapprox=224;RAW_GT_COUNT=0,0,1;RAW_MQandDP=159610,45;ReadPosRankSum=-0.967;VarDP=43 GT:AD:DP:GQ:PL:SB 1:19,24,0:43:99:224,0,834:8,11,9,15 +chrX 1113117 . A . . END=1113142 GT:DP:GQ:MIN_DP:PL 0:45:99:45:0,1410 +chrX 1113143 . A . . END=1113143 GT:DP:GQ:MIN_DP:PL 0:49:16:49:0,16 +chrX 1113144 . C . . END=1113287 GT:DP:GQ:MIN_DP:PL 0:46:99:46:0,1345 +chrX 1113288 . A G, 104.04 . AS_QUALapprox=|114|0;AS_VarDP=21|25|0;BaseQRankSum=-0.985;DP=48;MQRankSum=0.000;QUALapprox=114;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;ReadPosRankSum=0.463;VarDP=46 GT:AD:DP:GQ:PL:SB 1:21,25,0:46:99:114,0,799:13,8,16,9 +chrX 1113289 . C . . END=1113439 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,1490 +chrX 1113440 . G A, 125.04 . AS_QUALapprox=|135|0;AS_VarDP=24|27|0;BaseQRankSum=1.300;DP=53;MQRankSum=0.000;QUALapprox=135;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;ReadPosRankSum=0.472;VarDP=51 GT:AD:DP:GQ:PL:SB 1:24,27,0:51:99:135,0,909:10,14,10,17 +chrX 1113441 . T . . END=1114046 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1584 +chrX 1114047 . C T, 0.89 . AS_QUALapprox=|10|0;AS_VarDP=33|33|0;BaseQRankSum=1.693;DP=66;MQRankSum=-1.741;QUALapprox=10;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234797,66;ReadPosRankSum=1.608;VarDP=66 GT:AD:DP:GQ:PL:SB 1:33,33,0:66:10:10,0,1465:15,18,13,20 +chrX 1114048 . G . . END=1114053 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1800 +chrX 1114054 . G . . END=1114054 GT:DP:GQ:MIN_DP:PL 0:62:0:62:0,0 +chrX 1114055 . G . . END=1114060 GT:DP:GQ:MIN_DP:PL 0:64:75:64:0,75 +chrX 1114061 . C G, 24.04 . AS_QUALapprox=|34|0;AS_VarDP=32|33|0;BaseQRankSum=-1.354;DP=65;MQRankSum=-1.714;QUALapprox=34;RAW_GT_COUNT=0,0,1;RAW_MQandDP=231197,65;ReadPosRankSum=0.719;VarDP=65 GT:AD:DP:GQ:PL:SB 1:32,33,0:65:34:34,0,1474:15,17,13,20 +chrX 1114062 . A . . END=1114064 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1800 +chrX 1114065 . A G, 24.04 . AS_QUALapprox=|34|0;AS_VarDP=32|33|0;BaseQRankSum=-1.235;DP=65;MQRankSum=-1.714;QUALapprox=34;RAW_GT_COUNT=0,0,1;RAW_MQandDP=231197,65;ReadPosRankSum=1.189;VarDP=65 GT:AD:DP:GQ:PL:SB 1:32,33,0:65:34:34,0,1474:15,17,13,20 +chrX 1114066 . G . . END=1114080 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1800 +chrX 1114081 . A . . END=1114081 GT:DP:GQ:MIN_DP:PL 0:60:0:60:0,0 +chrX 1114082 . C . . END=1114243 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,1036 +chrX 1114244 . G A, 131.04 . AS_QUALapprox=|141|0;AS_VarDP=17|19|0;BaseQRankSum=1.980;DP=38;MQRankSum=0.160;QUALapprox=141;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133166,38;ReadPosRankSum=1.141;VarDP=36 GT:AD:DP:GQ:PL:SB 1:17,19,0:36:99:141,0,651:9,8,10,9 +chrX 1114245 . C . . END=1114554 GT:DP:GQ:MIN_DP:PL 0:40:99:40:0,745 +chrX 1114555 . A T, 59.04 . AS_QUALapprox=|69|0;AS_VarDP=22|26|0;BaseQRankSum=0.218;DP=50;MQRankSum=0.000;QUALapprox=69;RAW_GT_COUNT=0,0,1;RAW_MQandDP=178000,50;ReadPosRankSum=-0.077;VarDP=48 GT:AD:DP:GQ:PL:SB 1:22,26,0:48:69:69,0,742:10,11,14,11 +chrX 1114556 . A . . END=1114668 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,1369 +chrX 1114669 . A G, 72.04 . AS_QUALapprox=|82|0;AS_VarDP=22|25|0;BaseQRankSum=0.389;DP=48;MQRankSum=-4.054;QUALapprox=82;RAW_GT_COUNT=0,0,1;RAW_MQandDP=141024,48;ReadPosRankSum=1.440;VarDP=47 GT:AD:DP:GQ:PL:SB 1:22,25,0:47:82:82,0,1072:7,15,14,11 +chrX 1114670 . G . . END=1114684 GT:DP:GQ:MIN_DP:PL 0:48:59:46:0,59 +chrX 1114685 . C T, 35.04 . AS_QUALapprox=|45|0;AS_VarDP=24|25|0;BaseQRankSum=-0.049;DP=51;MQRankSum=-4.405;QUALapprox=45;RAW_GT_COUNT=0,0,1;RAW_MQandDP=148037,51;ReadPosRankSum=2.292;VarDP=49 GT:AD:DP:GQ:PL:SB 1:24,25,0:49:45:45,0,1094:8,16,13,12 +chrX 1114686 . C . . END=1115158 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1443 +chrX 1115159 . T C, 775.04 . AS_QUALapprox=|785|0;AS_VarDP=26|49|0;BaseQRankSum=1.711;DP=78;MQRankSum=0.000;QUALapprox=785;RAW_GT_COUNT=0,0,1;RAW_MQandDP=280800,78;ReadPosRankSum=-0.423;VarDP=75 GT:AD:DP:GQ:PL:SB 1:26,49,0:75:99:785,0,1578:14,12,29,20 +chrX 1115160 . G . . END=1115610 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1340 +chrX 1115611 . G . . END=1115611 GT:DP:GQ:MIN_DP:PL 0:73:0:73:0,0 +chrX 1115612 . T . . END=1115792 GT:DP:GQ:MIN_DP:PL 0:78:99:78:0,1800 +chrX 1115793 . T A, 300.04 . AS_QUALapprox=|310|0;AS_VarDP=31|43|0;BaseQRankSum=-2.125;DP=76;MQRankSum=0.000;QUALapprox=310;RAW_GT_COUNT=0,0,1;RAW_MQandDP=273600,76;ReadPosRankSum=0.926;VarDP=74 GT:AD:DP:GQ:PL:SB 1:31,43,0:74:99:310,0,1364:20,11,18,25 +chrX 1115794 . T . . END=1115990 GT:DP:GQ:MIN_DP:PL 0:77:99:77:0,1800 +chrX 1115991 . T C, 158.04 . AS_QUALapprox=|168|0;AS_VarDP=32|38|0;BaseQRankSum=-0.930;DP=73;MQRankSum=0.000;QUALapprox=168;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;ReadPosRankSum=-0.248;VarDP=70 GT:AD:DP:GQ:PL:SB 1:32,38,0:70:99:168,0,1241:21,11,25,13 +chrX 1115992 . T . . END=1116050 GT:DP:GQ:MIN_DP:PL 0:74:99:74:0,1800 +chrX 1116051 . G A, 169.04 . AS_QUALapprox=|179|0;AS_VarDP=36|40|0;BaseQRankSum=0.675;DP=78;MQRankSum=0.000;QUALapprox=179;RAW_GT_COUNT=0,0,1;RAW_MQandDP=280800,78;ReadPosRankSum=-0.151;VarDP=76 GT:AD:DP:GQ:PL:SB 1:36,40,0:76:99:179,0,1290:21,15,21,19 +chrX 1116052 . C . . END=1119647 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1153 +chrX 1119648 . AG A, 2092.01 . AS_QUALapprox=|2102|0;AS_VarDP=0|59|0;DP=63;QUALapprox=2102;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:2102,0,2102:0,0,36,23 +chrX 1119650 . G . . END=1119904 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1760 +chrX 1119905 . A AT, 1144.01 . AS_QUALapprox=|1154|0;AS_VarDP=1|45|0;BaseQRankSum=-0.442;DP=58;MQRankSum=0.000;QUALapprox=1154;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208225,58;ReadPosRankSum=-1.394;VarDP=46 GT:AD:DP:GQ:PL:SB 1:1,45,0:46:99:1154,0,1181:1,0,29,16 +chrX 1119906 . T . . END=1119938 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,1329 +chrX 1119939 . A G, 1307.04 . AS_QUALapprox=|1317|0;AS_VarDP=0|46|0;DP=52;QUALapprox=1317;RAW_GT_COUNT=0,0,1;RAW_MQandDP=186625,52;VarDP=46 GT:AD:DP:GQ:PL:SB 1:0,46,0:46:99:1317,0,1317:0,0,23,23 +chrX 1119940 . C . . END=1120162 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1449 +chrX 1120163 . GTC G, 1972.01 . AS_QUALapprox=|1982|0;AS_VarDP=0|47|0;DP=50;QUALapprox=1982;RAW_GT_COUNT=0,0,1;RAW_MQandDP=178801,50;VarDP=47 GT:AD:DP:GQ:PL:SB 1:0,47,0:47:99:1982,0,1982:0,0,21,26 +chrX 1120166 . T . . END=1120278 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1623 +chrX 1120279 . C T, 1782.04 . AS_QUALapprox=|1792|0;AS_VarDP=0|53|0;DP=56;QUALapprox=1792;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=53 GT:AD:DP:GQ:PL:SB 1:0,53,0:53:99:1792,0,1792:0,0,24,29 +chrX 1120280 . G . . END=1120585 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1467 +chrX 1120586 . C G, 2089.04 . AS_QUALapprox=|2099|0;AS_VarDP=1|65|0;BaseQRankSum=2.736;DP=66;MQRankSum=0.000;QUALapprox=2099;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;ReadPosRankSum=0.683;VarDP=66 GT:AD:DP:GQ:PL:SB 1:1,65,0:66:99:2099,0,2109:0,1,26,39 +chrX 1120587 . T . . END=1121021 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1642 +chrX 1121022 . G A, 1757.04 . AS_QUALapprox=|1767|0;AS_VarDP=0|52|0;DP=57;QUALapprox=1767;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:1767,0,1767:0,0,32,20 +chrX 1121023 . G . . END=1121216 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,535 +chrX 1121217 . G A, 1115.04 . AS_QUALapprox=|1399|0;AS_VarDP=1|45|0;BaseQRankSum=2.123;DP=53;MQRankSum=0.000;QUALapprox=1399;RAW_GT_COUNT=0,0,1;RAW_MQandDP=184651,53;ReadPosRankSum=0.744;VarDP=46 GT:AD:DP:GQ:PL:SB 1:1,45,0:46:99:1399,0,1415:1,0,16,18 +chrX 1121218 . C . . END=1121265 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,272 +chrX 1121266 . A G, 1445.04 . AS_QUALapprox=|1722|0;AS_VarDP=0|39|0;DP=58;QUALapprox=1722;RAW_GT_COUNT=0,0,1;RAW_MQandDP=202651,58;VarDP=39 GT:AD:DP:GQ:PL:SB 1:0,39,0:39:99:1722,0,1738:0,0,18,21 +chrX 1121267 . T . . END=1121269 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,489 +chrX 1121270 . G A, 1625.04 . AS_QUALapprox=|1756|0;AS_VarDP=0|40|0;DP=62;QUALapprox=1756;RAW_GT_COUNT=0,0,1;RAW_MQandDP=217051,62;VarDP=40 GT:AD:DP:GQ:PL:SB 1:0,40,0:40:99:1756,0,1891:0,0,19,21 +chrX 1121271 . G . . END=1121738 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,676 +chrX 1121739 . A C, 2001.04 . AS_QUALapprox=|2011|0;AS_VarDP=0|60|0;DP=60;QUALapprox=2011;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:2011,0,2011:0,0,40,20 +chrX 1121740 . G . . END=1121931 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1800 +chrX 1121932 . C T, 2144.04 . AS_QUALapprox=|2154|0;AS_VarDP=0|66|0;DP=70;QUALapprox=2154;RAW_GT_COUNT=0,0,1;RAW_MQandDP=250000,70;VarDP=66 GT:AD:DP:GQ:PL:SB 1:0,66,0:66:99:2154,0,2154:0,0,27,39 +chrX 1121933 . G . . END=1122545 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1609 +chrX 1122546 . C A, 2069.04 . AS_QUALapprox=|2079|0;AS_VarDP=0|61|0;DP=62;QUALapprox=2079;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,61,0:61:99:2079,0,2079:0,0,32,29 +chrX 1122547 . T . . END=1123775 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1482 +chrX 1123776 . C G, 1666.04 . AS_QUALapprox=|1676|0;AS_VarDP=2|54|0;BaseQRankSum=1.234;DP=58;MQRankSum=-0.096;QUALapprox=1676;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208225,58;ReadPosRankSum=1.347;VarDP=56 GT:AD:DP:GQ:PL:SB 1:2,54,0:56:99:1676,0,1720:0,2,33,21 +chrX 1123777 . C . . END=1124513 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1359 +chrX 1124514 . CACGT C, 1599.01 . AS_QUALapprox=|1609|0;AS_VarDP=1|47|0;BaseQRankSum=-0.529;DP=67;MQRankSum=0.000;QUALapprox=1609;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;ReadPosRankSum=0.108;VarDP=48 GT:AD:DP:GQ:PL:SB 1:1,47,0:48:99:1609,0,1654:1,0,28,19 +chrX 1124519 . G . . END=1125141 GT:DP:GQ:MIN_DP:PL 0:74:99:74:0,1643 +chrX 1125142 . TTAGA T, 2683.01 . AS_QUALapprox=|2693|0;AS_VarDP=0|60|0;DP=72;QUALapprox=2693;RAW_GT_COUNT=0,0,1;RAW_MQandDP=258516,72;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:2693,0,2693:0,0,40,20 +chrX 1125147 . T . . END=1125213 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1603 +chrX 1125214 . TAGAC T, 2330.01 . AS_QUALapprox=|2340|0;AS_VarDP=0|52|0;DP=54;QUALapprox=2340;RAW_GT_COUNT=0,0,1;RAW_MQandDP=193716,54;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:2340,0,2340:0,0,34,18 +chrX 1125219 . A . . END=1125259 GT:DP:GQ:MIN_DP:PL 0:46:99:46:0,1326 +chrX 1125260 . C CATAG, 1976.01 . AS_QUALapprox=|1986|0;AS_VarDP=0|46|0;DP=48;QUALapprox=1986;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172116,48;VarDP=46 GT:AD:DP:GQ:PL:SB 1:0,46,0:46:99:1986,0,1986:0,0,25,21 +chrX 1125261 . A . . END=1125295 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,1380 +chrX 1125296 . TGATA T, 2423.01 . AS_QUALapprox=|2433|0;AS_VarDP=0|55|0;DP=58;QUALapprox=2433;RAW_GT_COUNT=0,0,1;RAW_MQandDP=204930,58;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:2433,0,2435:0,0,26,29 +chrX 1125301 . G . . END=1125324 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1544 +chrX 1125325 . T C, 2148.04 . AS_QUALapprox=|2158|0;AS_VarDP=0|52|0;DP=54;QUALapprox=2158;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190530,54;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:2158,0,2158:0,0,26,26 +chrX 1125326 . A . . END=1125528 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1617 +chrX 1125529 . G A, 1607.04 . AS_QUALapprox=|1617|0;AS_VarDP=0|48|0;DP=49;QUALapprox=1617;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=48 GT:AD:DP:GQ:PL:SB 1:0,48,0:48:99:1617,0,1617:0,0,19,29 +chrX 1125530 . A . . END=1126647 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1509 +chrX 1126648 . G C, 2397.04 . AS_QUALapprox=|2407|0;AS_VarDP=0|74|0;DP=76;QUALapprox=2407;RAW_GT_COUNT=0,0,1;RAW_MQandDP=273600,76;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,74,0:74:99:2407,0,2407:0,0,38,36 +chrX 1126649 . G . . END=1126827 GT:DP:GQ:MIN_DP:PL 0:74:99:74:0,1800 +chrX 1126828 . T A, 2373.04 . AS_QUALapprox=|2383|0;AS_VarDP=0|71|0;DP=74;QUALapprox=2383;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,71,0:71:99:2383,0,2383:0,0,25,46 +chrX 1126829 . A . . END=1127010 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1800 +chrX 1127011 . G C, 1716.04 . AS_QUALapprox=|1726|0;AS_VarDP=0|55|0;DP=60;QUALapprox=1726;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:1726,0,1726:0,0,28,27 +chrX 1127012 . G . . END=1127212 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1164 +chrX 1127213 . A ATAGG, 3118.01 . AS_QUALapprox=|3128|0;AS_VarDP=0|70|0;DP=74;QUALapprox=3128;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,70,0:70:99:3128,0,3128:0,0,32,38 +chrX 1127214 . T . . END=1127291 GT:DP:GQ:MIN_DP:PL 0:77:99:77:0,1800 +chrX 1127292 . CACAGGTACAGGT C, 1868.01 . AS_QUALapprox=|1878|0;AS_VarDP=2|57|0;BaseQRankSum=-0.688;DP=73;MQRankSum=0.000;QUALapprox=1878;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;ReadPosRankSum=1.341;VarDP=59 GT:AD:DP:GQ:PL:SB 1:2,57,0:59:99:1878,0,1897:2,0,21,36 +chrX 1127305 . A . . END=1127379 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1800 +chrX 1127380 . C . . END=1127380 GT:DP:GQ:MIN_DP:PL 0:69:0:69:0,0 +chrX 1127381 . G . . END=1127434 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1305 +chrX 1127435 . A . . END=1127437 GT:DP:GQ:MIN_DP:PL 0:43:0:43:0,0 +chrX 1127438 . G . . END=1127439 GT:DP:GQ:MIN_DP:PL 0:39:99:39:0,1200 +chrX 1127440 . C . . END=1127440 GT:DP:GQ:MIN_DP:PL 0:39:0:39:0,0 +chrX 1127441 . G . . END=1127446 GT:DP:GQ:MIN_DP:PL 0:37:99:37:0,565 +chrX 1127447 . G . . END=1127447 GT:DP:GQ:MIN_DP:PL 0:28:0:28:0,0 +chrX 1127448 . C . . END=1127475 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,450 +chrX 1127476 . G . . END=1127479 GT:DP:GQ:MIN_DP:PL 0:15:0:15:0,0 +chrX 1127480 . G . . END=1127482 GT:DP:GQ:MIN_DP:PL 0:15:99:15:0,313 +chrX 1127483 . A . . END=1127483 GT:DP:GQ:MIN_DP:PL 0:14:0:14:0,0 +chrX 1127484 . C . . END=1127499 GT:DP:GQ:MIN_DP:PL 0:12:45:12:0,45 +chrX 1127500 . T . . END=1127500 GT:DP:GQ:MIN_DP:PL 0:9:0:9:0,0 +chrX 1127501 . A . . END=1127509 GT:DP:GQ:MIN_DP:PL 0:6:45:6:0,45 +chrX 1127510 . G . . END=1127553 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1127554 . C . . END=1127581 GT:DP:GQ:MIN_DP:PL 0:3:35:1:0,35 +chrX 1127582 . T . . END=1127582 GT:DP:GQ:MIN_DP:PL 0:6:0:6:0,0 +chrX 1127583 . G . . END=1127614 GT:DP:GQ:MIN_DP:PL 0:9:99:9:0,149 +chrX 1127615 . A . . END=1127615 GT:DP:GQ:MIN_DP:PL 0:13:5:13:0,5 +chrX 1127616 . G . . END=1127617 GT:DP:GQ:MIN_DP:PL 0:13:99:13:0,402 +chrX 1127618 . T . . END=1127618 GT:DP:GQ:MIN_DP:PL 0:12:0:12:0,0 +chrX 1127619 . G . . END=1127799 GT:DP:GQ:MIN_DP:PL 0:17:45:17:0,45 +chrX 1127800 . T . . END=1127800 GT:DP:GQ:MIN_DP:PL 0:19:0:19:0,0 +chrX 1127801 . G . . END=1127852 GT:DP:GQ:MIN_DP:PL 0:18:35:17:0,35 +chrX 1127853 . G . . END=1127871 GT:DP:GQ:MIN_DP:PL 0:3:0:3:0,0 +chrX 1127872 . G . . END=1127886 GT:DP:GQ:MIN_DP:PL 0:2:20:1:0,20 +chrX 1127887 . C . . END=1127888 GT:DP:GQ:MIN_DP:PL 0:4:0:4:0,0 +chrX 1127889 . G . . END=1127889 GT:DP:GQ:MIN_DP:PL 0:4:99:4:0,119 +chrX 1127890 . C . . END=1127890 GT:DP:GQ:MIN_DP:PL 0:4:0:4:0,0 +chrX 1127891 . A . . END=1127891 GT:DP:GQ:MIN_DP:PL 0:4:99:4:0,139 +chrX 1127892 . G . . END=1127893 GT:DP:GQ:MIN_DP:PL 0:4:0:4:0,0 +chrX 1127894 . G . . END=1127894 GT:DP:GQ:MIN_DP:PL 0:4:99:4:0,119 +chrX 1127895 . A . . END=1127895 GT:DP:GQ:MIN_DP:PL 0:4:0:4:0,0 +chrX 1127896 . C . . END=1127900 GT:DP:GQ:MIN_DP:PL 0:7:74:7:0,74 +chrX 1127901 . A . . END=1127901 GT:DP:GQ:MIN_DP:PL 0:7:5:7:0,5 +chrX 1127902 . C . . END=1127905 GT:DP:GQ:MIN_DP:PL 0:9:99:9:0,157 +chrX 1127906 . G . . END=1127906 GT:DP:GQ:MIN_DP:PL 0:5:0:5:0,0 +chrX 1127907 . G . . END=1127929 GT:DP:GQ:MIN_DP:PL 0:9:99:9:0,114 +chrX 1127930 . T . . END=1127930 GT:DP:GQ:MIN_DP:PL 0:10:0:10:0,0 +chrX 1127931 . A . . END=1127938 GT:DP:GQ:MIN_DP:PL 0:10:99:10:0,307 +chrX 1127939 . A . . END=1127939 GT:DP:GQ:MIN_DP:PL 0:10:0:10:0,0 +chrX 1127940 . G . . END=1127977 GT:DP:GQ:MIN_DP:PL 0:15:99:15:0,174 +chrX 1127978 . T G, 28.04 . AS_QUALapprox=|38|0;AS_VarDP=9|10|0;BaseQRankSum=1.517;DP=22;MQRankSum=-1.761;QUALapprox=38;RAW_GT_COUNT=0,0,1;RAW_MQandDP=21613,22;ReadPosRankSum=1.390;VarDP=19 GT:AD:DP:GQ:PL:SB 1:9,10,0:19:38:38,0,253:5,4,2,8 +chrX 1127979 . G . . END=1128109 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,473 +chrX 1128110 . T G, 427.04 . AS_QUALapprox=|437|0;AS_VarDP=0|17|0;DP=19;QUALapprox=437;RAW_GT_COUNT=0,0,1;RAW_MQandDP=20493,19;VarDP=17 GT:AD:DP:GQ:PL:SB 1:0,17,0:17:99:437,0,437:0,0,7,10 +chrX 1128111 . A . . END=1128168 GT:DP:GQ:MIN_DP:PL 0:12:45:12:0,45 +chrX 1128169 . A . . END=1128208 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1128209 . C . . END=1128210 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 1128211 . C . . END=1128211 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 1128212 . T . . END=1128312 GT:DP:GQ:MIN_DP:PL 0:2:35:1:0,35 +chrX 1128313 . A . . END=1128313 GT:DP:GQ:MIN_DP:PL 0:2:10:2:0,10 +chrX 1128314 . T . . END=1128325 GT:DP:GQ:MIN_DP:PL 0:2:70:2:0,70 +chrX 1128326 . T . . END=1128326 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 1128327 . A . . END=1128336 GT:DP:GQ:MIN_DP:PL 0:2:70:2:0,70 +chrX 1128337 . A . . END=1128337 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 1128338 . T . . END=1128353 GT:DP:GQ:MIN_DP:PL 0:2:45:2:0,45 +chrX 1128354 . A . . END=1128491 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1128492 . G . . END=1128510 GT:DP:GQ:MIN_DP:PL 0:2:35:1:0,35 +chrX 1128511 . G . . END=1128511 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 1128512 . G . . END=1128517 GT:DP:GQ:MIN_DP:PL 0:2:45:2:0,45 +chrX 1128518 . T . . END=1128518 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 1128519 . G . . END=1128520 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1128521 . G . . END=1128521 GT:DP:GQ:MIN_DP:PL 0:3:0:3:0,0 +chrX 1128522 . G . . END=1128589 GT:DP:GQ:MIN_DP:PL 0:8:70:8:0,70 +chrX 1128590 . T . . END=1128590 GT:DP:GQ:MIN_DP:PL 0:11:0:11:0,0 +chrX 1128591 . G . . END=1128712 GT:DP:GQ:MIN_DP:PL 0:20:90:20:0,90 +chrX 1128713 . A . . END=1128713 GT:DP:GQ:MIN_DP:PL 0:3:0:3:0,0 +chrX 1128714 . A . . END=1128839 GT:DP:GQ:MIN_DP:PL 0:22:55:22:0,55 +chrX 1128840 . T . . END=1128840 GT:DP:GQ:MIN_DP:PL 0:34:0:34:0,0 +chrX 1128841 . G . . END=1133499 GT:DP:GQ:MIN_DP:PL 0:40:20:40:0,20 +chrX 1133500 . C G, 245.04 . AS_QUALapprox=|255|0;AS_VarDP=24|34|0;BaseQRankSum=-0.989;DP=62;MQRankSum=1.225;QUALapprox=255;RAW_GT_COUNT=0,0,1;RAW_MQandDP=222625,62;ReadPosRankSum=-0.908;VarDP=58 GT:AD:DP:GQ:PL:SB 1:24,34,0:58:99:255,0,1045:13,11,16,18 +chrX 1133501 . G . . END=1134659 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1349 +chrX 1134660 . G C, 2374.04 . AS_QUALapprox=|2384|0;AS_VarDP=0|76|0;DP=77;QUALapprox=2384;RAW_GT_COUNT=0,0,1;RAW_MQandDP=275625,77;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,76,0:76:99:2384,0,2384:0,0,38,38 +chrX 1134661 . T . . END=1135989 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1101 +chrX 1135990 . C A, 325.04 . AS_QUALapprox=|335|0;AS_VarDP=18|25|0;BaseQRankSum=2.118;DP=43;MQRankSum=1.226;QUALapprox=335;RAW_GT_COUNT=0,0,1;RAW_MQandDP=153801,43;ReadPosRankSum=-0.764;VarDP=43 GT:AD:DP:GQ:PL:SB 1:18,25,0:43:99:335,0,1115:8,10,12,13 +chrX 1135991 . A . . END=1136004 GT:DP:GQ:MIN_DP:PL 0:41:99:41:0,1316 +chrX 1136005 . G A, 305.04 . AS_QUALapprox=|315|0;AS_VarDP=17|24|0;BaseQRankSum=1.238;DP=41;MQRankSum=1.238;QUALapprox=315;RAW_GT_COUNT=0,0,1;RAW_MQandDP=146601,41;ReadPosRankSum=-0.291;VarDP=41 GT:AD:DP:GQ:PL:SB 1:17,24,0:41:99:315,0,1080:8,9,11,13 +chrX 1136006 . C . . END=1136010 GT:DP:GQ:MIN_DP:PL 0:39:99:39:0,1276 +chrX 1136011 . C T, 225.04 . AS_QUALapprox=|235|0;AS_VarDP=17|22|0;BaseQRankSum=1.667;DP=39;MQRankSum=0.000;QUALapprox=235;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140400,39;ReadPosRankSum=0.468;VarDP=39 GT:AD:DP:GQ:PL:SB 1:17,22,0:39:99:235,0,990:9,8,11,11 +chrX 1136012 . T . . END=1136042 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,953 +chrX 1136043 . C A, 56.04 . AS_QUALapprox=|66|0;AS_VarDP=13|15|0;BaseQRankSum=0.155;DP=29;MQRankSum=-1.289;QUALapprox=66;RAW_GT_COUNT=0,0,1;RAW_MQandDP=101009,29;ReadPosRankSum=1.269;VarDP=28 GT:AD:DP:GQ:PL:SB 1:13,15,0:28:66:66,0,507:6,7,8,7 +chrX 1136044 . T . . END=1136556 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,248 +chrX 1136557 . C . . END=1136557 GT:DP:GQ:MIN_DP:PL 0:56:0:56:0,0 +chrX 1136558 . T . . END=1136708 GT:DP:GQ:MIN_DP:PL 0:59:61:57:0,61 +chrX 1136709 . G . . END=1136709 GT:DP:GQ:MIN_DP:PL 0:55:0:55:0,0 +chrX 1136710 . T . . END=1136792 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,675 +chrX 1136793 . T G, 28.04 . AS_QUALapprox=|38|0;AS_VarDP=25|30|0;BaseQRankSum=-2.099;DP=73;MQRankSum=-0.408;QUALapprox=38;RAW_GT_COUNT=0,0,1;RAW_MQandDP=249688,73;ReadPosRankSum=-2.275;VarDP=55 GT:AD:DP:GQ:PL:SB 1:25,30,0:55:38:38,0,1256:13,12,20,10 +chrX 1136794 . C . . END=1137172 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,183 +chrX 1137173 . C T, 215.04 . AS_QUALapprox=|225|0;AS_VarDP=25|31|0;BaseQRankSum=0.598;DP=58;MQRankSum=-0.338;QUALapprox=225;RAW_GT_COUNT=0,0,1;RAW_MQandDP=203609,58;ReadPosRankSum=-0.610;VarDP=56 GT:AD:DP:GQ:PL:SB 1:25,31,0:56:99:225,0,997:11,14,15,16 +chrX 1137174 . G . . END=1137176 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1800 +chrX 1137177 . T C, 2141.04 . AS_QUALapprox=|2151|0;AS_VarDP=0|58|0;DP=59;QUALapprox=2151;RAW_GT_COUNT=0,0,1;RAW_MQandDP=209909,59;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,58,0:58:99:2151,0,2151:0,0,27,31 +chrX 1137178 . G . . END=1137701 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1349 +chrX 1137702 . C G, 228.04 . AS_QUALapprox=|238|0;AS_VarDP=22|29|0;BaseQRankSum=0.749;DP=52;MQRankSum=0.000;QUALapprox=238;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;ReadPosRankSum=-1.417;VarDP=51 GT:AD:DP:GQ:PL:SB 1:22,29,0:51:99:238,0,963:7,15,13,16 +chrX 1137703 . A . . END=1137977 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1772 +chrX 1137978 . C G, 292.04 . AS_QUALapprox=|302|0;AS_VarDP=29|40|0;BaseQRankSum=-1.311;DP=73;MQRankSum=0.000;QUALapprox=302;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;ReadPosRankSum=-0.383;VarDP=69 GT:AD:DP:GQ:PL:SB 1:29,40,0:69:99:302,0,1290:13,16,26,14 +chrX 1137979 . C . . END=1138174 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1666 +chrX 1138175 . A G, 24.04 . AS_QUALapprox=|34|0;AS_VarDP=29|31|0;BaseQRankSum=-1.090;DP=62;MQRankSum=0.000;QUALapprox=34;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;ReadPosRankSum=-0.104;VarDP=60 GT:AD:DP:GQ:PL:SB 1:29,31,0:60:34:34,0,952:9,20,18,13 +chrX 1138176 . T . . END=1140553 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,185 +chrX 1140554 . C T, 151.04 . AS_QUALapprox=|161|0;AS_VarDP=36|40|0;BaseQRankSum=-0.248;DP=78;MQRankSum=0.000;QUALapprox=161;RAW_GT_COUNT=0,0,1;RAW_MQandDP=280800,78;ReadPosRankSum=0.320;VarDP=76 GT:AD:DP:GQ:PL:SB 1:36,40,0:76:99:161,0,1719:22,14,22,18 +chrX 1140555 . G . . END=1140568 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1800 +chrX 1140569 . A G, 101.04 . AS_QUALapprox=|111|0;AS_VarDP=35|38|0;BaseQRankSum=-2.018;DP=74;MQRankSum=0.000;QUALapprox=111;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;ReadPosRankSum=0.812;VarDP=73 GT:AD:DP:GQ:PL:SB 1:35,38,0:73:99:111,0,1634:21,14,21,17 +chrX 1140570 . C . . END=1141202 GT:DP:GQ:MIN_DP:PL 0:70:66:70:0,66 +chrX 1141203 . G A, 75.04 . AS_QUALapprox=|85|0;AS_VarDP=28|28|0;BaseQRankSum=2.070;DP=59;MQRankSum=-2.037;QUALapprox=85;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208101,59;ReadPosRankSum=-0.221;VarDP=56 GT:AD:DP:GQ:PL:SB 1:28,28,0:56:85:85,0,923:13,15,13,15 +chrX 1141204 . C . . END=1141233 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1756 +chrX 1141234 . C T, 175.04 . AS_QUALapprox=|185|0;AS_VarDP=25|30|0;BaseQRankSum=2.182;DP=58;MQRankSum=-1.590;QUALapprox=185;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205500,58;ReadPosRankSum=-0.330;VarDP=55 GT:AD:DP:GQ:PL:SB 1:25,30,0:55:99:185,0,1278:11,14,14,16 +chrX 1141235 . G . . END=1141238 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,1642 +chrX 1141239 . G C, 90.04 . AS_QUALapprox=|100|0;AS_VarDP=24|26|0;BaseQRankSum=2.503;DP=53;MQRankSum=-1.676;QUALapprox=100;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187500,53;ReadPosRankSum=0.120;VarDP=50 GT:AD:DP:GQ:PL:SB 1:24,26,0:50:99:100,0,1160:11,13,13,13 +chrX 1141240 . A . . END=1141264 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,1439 +chrX 1141265 . A G, 233.04 . AS_QUALapprox=|243|0;AS_VarDP=18|25|0;BaseQRankSum=0.367;DP=48;MQRankSum=-1.478;QUALapprox=243;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169500,48;ReadPosRankSum=0.739;VarDP=43 GT:AD:DP:GQ:PL:SB 1:18,25,0:43:99:243,0,848:9,9,15,10 +chrX 1141266 . T . . END=1141770 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1577 +chrX 1141771 . A G, 122.04 . AS_QUALapprox=|132|0;AS_VarDP=30|35|0;BaseQRankSum=-0.838;DP=65;MQRankSum=-0.434;QUALapprox=132;RAW_GT_COUNT=0,0,1;RAW_MQandDP=232065,65;ReadPosRankSum=-0.507;VarDP=65 GT:AD:DP:GQ:PL:SB 1:30,35,0:65:99:132,0,1110:9,21,16,19 +chrX 1141772 . T . . END=1142224 GT:DP:GQ:MIN_DP:PL 0:39:99:39:0,412 +chrX 1142225 . AAC A, 236.01 . AS_QUALapprox=|246|0;AS_VarDP=1|11|0;BaseQRankSum=-0.530;DP=26;MQRankSum=-0.517;QUALapprox=246;RAW_GT_COUNT=0,0,1;RAW_MQandDP=55308,26;ReadPosRankSum=0.145;VarDP=12 GT:AD:DP:GQ:PL:SB 1:1,11,0:12:99:246,0,273:1,0,3,8 +chrX 1142228 . A . . END=1142573 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,496 +chrX 1142574 . AACACACAC A,AACAC, 342.01 . AS_QUALapprox=|231|352|0;AS_VarDP=2|9|10|0;BaseQRankSum=-0.167;DP=27;MQRankSum=2.142;QUALapprox=352;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75786,27;ReadPosRankSum=1.736;VarDP=21 GT:AD:DP:GQ:PL:SB 2:2,9,10,0:21:99:352,121,0,468:1,1,6,13 +chrX 1142583 . A . . END=1142845 GT:DP:GQ:MIN_DP:PL 0:44:99:44:0,168 +chrX 1142846 . G . . END=1142846 GT:DP:GQ:MIN_DP:PL 0:39:0:39:0,0 +chrX 1142847 . C . . END=1143167 GT:DP:GQ:MIN_DP:PL 0:21:99:21:0,135 +chrX 1143168 . C . . END=1143169 GT:DP:GQ:MIN_DP:PL 0:12:0:12:0,0 +chrX 1143170 . C . . END=1144230 GT:DP:GQ:MIN_DP:PL 0:23:45:23:0,45 +chrX 1144231 . A C, 600.04 . AS_QUALapprox=|610|0;AS_VarDP=26|37|0;BaseQRankSum=1.065;DP=66;MQRankSum=1.724;QUALapprox=610;RAW_GT_COUNT=0,0,1;RAW_MQandDP=232457,66;ReadPosRankSum=1.809;VarDP=63 GT:AD:DP:GQ:PL:SB 1:26,37,0:63:99:610,0,1643:14,12,15,22 +chrX 1144232 . A . . END=1144248 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1800 +chrX 1144249 . A C, 877.04 . AS_QUALapprox=|887|0;AS_VarDP=23|43|0;BaseQRankSum=0.443;DP=67;MQRankSum=1.399;QUALapprox=887;RAW_GT_COUNT=0,0,1;RAW_MQandDP=240516,67;ReadPosRankSum=0.761;VarDP=66 GT:AD:DP:GQ:PL:SB 1:23,43,0:66:99:887,0,1843:11,12,21,22 +chrX 1144250 . C . . END=1144682 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,173 +chrX 1144683 . C T, 4.10 . AS_QUALapprox=|14|0;AS_VarDP=38|39|0;BaseQRankSum=-0.470;DP=79;MQRankSum=-0.961;QUALapprox=14;RAW_GT_COUNT=0,0,1;RAW_MQandDP=283825,79;ReadPosRankSum=-0.331;VarDP=77 GT:AD:DP:GQ:PL:SB 1:38,39,0:77:14:14,0,1250:24,14,25,14 +chrX 1144684 . G . . END=1145082 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1611 +chrX 1145083 . C CA,CAA, 848.01 . AS_QUALapprox=|732|858|0;AS_VarDP=0|16|23|0;DP=68;QUALapprox=858;RAW_GT_COUNT=0,0,1;RAW_MQandDP=238805,68;VarDP=39 GT:AD:DP:GQ:PL:SB 2:0,16,23,0:39:99:858,126,0,676:0,0,20,19 +chrX 1145084 . A . . END=1145287 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1606 +chrX 1145288 . T TCTC, 195.01 . AS_QUALapprox=|205|0;AS_VarDP=26|30|0;BaseQRankSum=-1.254;DP=59;MQRankSum=0.000;QUALapprox=205;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;ReadPosRankSum=0.962;VarDP=56 GT:AD:DP:GQ:PL:SB 1:26,30,0:56:99:205,0,1342:18,8,17,13 +chrX 1145289 . C . . END=1145456 GT:DP:GQ:MIN_DP:PL 0:77:99:77:0,1800 +chrX 1145457 . G A, 298.04 . AS_QUALapprox=|308|0;AS_VarDP=32|40|0;BaseQRankSum=1.370;DP=75;MQRankSum=0.000;QUALapprox=308;RAW_GT_COUNT=0,0,1;RAW_MQandDP=270000,75;ReadPosRankSum=0.380;VarDP=72 GT:AD:DP:GQ:PL:SB 1:32,40,0:72:99:308,0,1335:12,20,23,17 +chrX 1145458 . T . . END=1145557 GT:DP:GQ:MIN_DP:PL 0:78:99:78:0,1800 +chrX 1145558 . C T, 3073.04 . AS_QUALapprox=|3083|0;AS_VarDP=0|69|0;DP=70;QUALapprox=3083;RAW_GT_COUNT=0,0,1;RAW_MQandDP=246634,70;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,69,0:69:99:3083,0,3083:0,0,28,41 +chrX 1145559 . G A, 3073.04 . AS_QUALapprox=|3083|0;AS_VarDP=0|69|0;DP=70;QUALapprox=3083;RAW_GT_COUNT=0,0,1;RAW_MQandDP=246634,70;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,69,0:69:99:3083,0,3083:0,0,28,41 +chrX 1145560 . G . . END=1145726 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,461 +chrX 1145727 . C T, 407.04 . AS_QUALapprox=|417|0;AS_VarDP=27|40|0;BaseQRankSum=-0.521;DP=68;MQRankSum=-1.149;QUALapprox=417;RAW_GT_COUNT=0,0,1;RAW_MQandDP=243541,68;ReadPosRankSum=0.678;VarDP=67 GT:AD:DP:GQ:PL:SB 1:27,40,0:67:99:417,0,1290:13,14,19,21 +chrX 1145728 . G . . END=1146246 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,232 +chrX 1146247 . A . . END=1146247 GT:DP:GQ:MIN_DP:PL 0:26:10:26:0,10 +chrX 1146248 . C . . END=1146273 GT:DP:GQ:MIN_DP:PL 0:9:45:9:0,45 +chrX 1146274 . T . . END=1146307 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1146308 . C . . END=1146573 GT:DP:GQ:MIN_DP:PL 0:2:35:1:0,35 +chrX 1146574 . G . . END=1146574 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1146575 . T . . END=1146581 GT:DP:GQ:MIN_DP:PL 0:2:35:1:0,35 +chrX 1146582 . C . . END=1146723 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1146724 . G . . END=1147372 GT:DP:GQ:MIN_DP:PL 0:15:35:1:0,35 +chrX 1147373 . C . . END=1147373 GT:DP:GQ:MIN_DP:PL 0:41:5:41:0,5 +chrX 1147374 . C . . END=1147404 GT:DP:GQ:MIN_DP:PL 0:46:99:46:0,1285 +chrX 1147405 . C . . END=1147405 GT:DP:GQ:MIN_DP:PL 0:44:0:44:0,0 +chrX 1147406 . G . . END=1147410 GT:DP:GQ:MIN_DP:PL 0:47:99:47:0,1469 +chrX 1147411 . C . . END=1147411 GT:DP:GQ:MIN_DP:PL 0:49:0:49:0,0 +chrX 1147412 . A . . END=1147438 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1627 +chrX 1147439 . T . . END=1147439 GT:DP:GQ:MIN_DP:PL 0:62:0:62:0,0 +chrX 1147440 . C . . END=1147522 GT:DP:GQ:MIN_DP:PL 0:73:99:73:0,1800 +chrX 1147523 . G C, 2351.04 . AS_QUALapprox=|2361|0;AS_VarDP=0|70|0;DP=73;QUALapprox=2361;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,70,0:70:99:2361,0,2361:0,0,33,37 +chrX 1147524 . T . . END=1147734 GT:DP:GQ:MIN_DP:PL 0:85:99:85:0,155 +chrX 1147735 . G A, 2645.04 . AS_QUALapprox=|2655|0;AS_VarDP=0|80|0;DP=86;QUALapprox=2655;RAW_GT_COUNT=0,0,1;RAW_MQandDP=309600,86;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,80,0:80:99:2655,0,2655:0,0,34,46 +chrX 1147736 . T . . END=1147882 GT:DP:GQ:MIN_DP:PL 0:75:99:75:0,412 +chrX 1147883 . C G, 3111.04 . AS_QUALapprox=|3121|0;AS_VarDP=0|71|0;DP=73;QUALapprox=3121;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,71,0:71:99:3121,0,3121:0,0,33,38 +chrX 1147884 . A C, 3111.04 . AS_QUALapprox=|3121|0;AS_VarDP=0|71|0;DP=75;QUALapprox=3121;RAW_GT_COUNT=0,0,1;RAW_MQandDP=270000,75;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,71,0:71:99:3121,0,3121:0,0,33,38 +chrX 1147885 . C . . END=1147907 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,120 +chrX 1147908 . G A, 21.04 . AS_QUALapprox=|31|0;AS_VarDP=34|34|0;BaseQRankSum=1.886;DP=74;MQRankSum=0.000;QUALapprox=31;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;ReadPosRankSum=2.062;VarDP=68 GT:AD:DP:GQ:PL:SB 1:34,34,0:68:31:31,0,1121:16,18,14,20 +chrX 1147909 . G . . END=1147977 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,385 +chrX 1147978 . C T, 394.04 . AS_QUALapprox=|404|0;AS_VarDP=29|38|0;BaseQRankSum=1.489;DP=69;MQRankSum=0.000;QUALapprox=404;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;ReadPosRankSum=0.620;VarDP=67 GT:AD:DP:GQ:PL:SB 1:29,38,0:67:99:404,0,1709:14,15,23,15 +chrX 1147979 . C G, 394.04 . AS_QUALapprox=|404|0;AS_VarDP=29|38|0;BaseQRankSum=0.768;DP=69;MQRankSum=0.000;QUALapprox=404;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;ReadPosRankSum=0.760;VarDP=67 GT:AD:DP:GQ:PL:SB 1:29,38,0:67:99:404,0,1709:14,15,23,15 +chrX 1147980 . C . . END=1148338 GT:DP:GQ:MIN_DP:PL 0:78:99:78:0,1578 +chrX 1148339 . A T, 1957.04 . AS_QUALapprox=|1967|0;AS_VarDP=0|59|0;DP=63;QUALapprox=1967;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:1967,0,1967:0,0,27,32 +chrX 1148340 . T . . END=1148482 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,203 +chrX 1148483 . T A,TA, 749.01 . AS_QUALapprox=|546|759|0;AS_VarDP=1|14|17|0;BaseQRankSum=-0.649;DP=36;MQRankSum=-0.214;QUALapprox=759;RAW_GT_COUNT=0,0,1;RAW_MQandDP=124445,36;ReadPosRankSum=-1.301;VarDP=32 GT:AD:DP:GQ:PL:SB 2:1,14,17,0:32:99:759,213,0,811:0,1,12,19 +chrX 1148484 . T . . END=1148496 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,540 +chrX 1148497 . A ATATTTTTTTTTT,ATATTTTTTTTTTTT,ATATATATTTTTTTTTT,ATATATATTTTTTTTTTTT, 855.01 . AS_QUALapprox=|727|587|829|865|0;AS_VarDP=1|4|2|1|4|0;BaseQRankSum=-0.649;DP=34;MQRankSum=-0.223;QUALapprox=865;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115245,34;ReadPosRankSum=0.290;VarDP=12 GT:AD:DP:GQ:PL:SB 4:1,4,2,1,4,0:12:36:865,138,278,36,0,618:0,1,4,7 +chrX 1148498 . T . . END=1148741 GT:DP:GQ:MIN_DP:PL 0:46:99:46:0,400 +chrX 1148742 . G C, 2545.04 . AS_QUALapprox=|2555|0;AS_VarDP=1|61|0;BaseQRankSum=1.572;DP=68;MQRankSum=-0.150;QUALapprox=2555;RAW_GT_COUNT=0,0,1;RAW_MQandDP=238966,68;ReadPosRankSum=1.509;VarDP=62 GT:AD:DP:GQ:PL:SB 1:1,61,0:62:99:2555,0,2600:1,0,39,22 +chrX 1148743 . C . . END=1148745 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1800 +chrX 1148746 . C G, 2802.04 . AS_QUALapprox=|2812|0;AS_VarDP=0|65|0;DP=67;QUALapprox=2812;RAW_GT_COUNT=0,0,1;RAW_MQandDP=235366,67;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,65,0:65:99:2812,0,2812:0,0,42,23 +chrX 1148747 . G . . END=1148857 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1507 +chrX 1148858 . G A, 1573.04 . AS_QUALapprox=|1583|0;AS_VarDP=0|50|0;DP=53;QUALapprox=1583;RAW_GT_COUNT=0,0,1;RAW_MQandDP=184670,53;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,50,0:50:99:1583,0,1583:0,0,19,31 +chrX 1148859 . C . . END=1148906 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1568 +chrX 1148907 . G A, 481.04 . AS_QUALapprox=|491|0;AS_VarDP=21|34|0;BaseQRankSum=2.235;DP=58;MQRankSum=-1.365;QUALapprox=491;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205354,58;ReadPosRankSum=0.919;VarDP=55 GT:AD:DP:GQ:PL:SB 1:21,34,0:55:99:491,0,1136:9,12,16,18 +chrX 1148908 . C . . END=1150000 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1093 +chrX 1150001 . C CA, 61.01 . AS_QUALapprox=|71|0;AS_VarDP=13|17|0;BaseQRankSum=-1.587;DP=52;MQRankSum=-1.806;QUALapprox=71;RAW_GT_COUNT=0,0,1;RAW_MQandDP=178461,52;ReadPosRankSum=-2.623;VarDP=30 GT:AD:DP:GQ:PL:SB 1:13,17,0:30:71:71,0,381:10,3,4,13 +chrX 1150002 . A . . END=1150189 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,500 +chrX 1150190 . G GATAGATAC, 0.45 . AS_QUALapprox=|9|0;AS_VarDP=23|23|0;BaseQRankSum=-0.529;DP=58;MQRankSum=-0.957;QUALapprox=9;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201395,58;ReadPosRankSum=-0.253;VarDP=46 GT:AD:DP:GQ:PL:SB 1:23,23,0:46:9:9,0,1035:14,9,13,10 +chrX 1150191 . A . . END=1150419 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1697 +chrX 1150420 . G A, 121.04 . AS_QUALapprox=|131|0;AS_VarDP=31|34|0;BaseQRankSum=1.229;DP=70;MQRankSum=1.078;QUALapprox=131;RAW_GT_COUNT=0,0,1;RAW_MQandDP=251425,70;ReadPosRankSum=-0.197;VarDP=65 GT:AD:DP:GQ:PL:SB 1:31,34,0:65:99:131,0,1148:15,16,19,15 +chrX 1150421 . G . . END=1150462 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1800 +chrX 1150463 . A G, 24.04 . AS_QUALapprox=|34|0;AS_VarDP=31|32|0;BaseQRankSum=0.049;DP=70;MQRankSum=0.000;QUALapprox=34;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;ReadPosRankSum=0.165;VarDP=63 GT:AD:DP:GQ:PL:SB 1:31,32,0:63:34:34,0,1092:12,19,17,15 +chrX 1150464 . T . . END=1150845 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,516 +chrX 1150846 . AAAG A, 40.01 . AS_QUALapprox=|50|0;AS_VarDP=16|16|0;BaseQRankSum=-0.440;DP=46;MQRankSum=0.000;QUALapprox=50;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162484,46;ReadPosRankSum=2.143;VarDP=32 GT:AD:DP:GQ:PL:SB 1:16,16,0:32:50:50,0,790:11,5,9,7 +chrX 1150850 . A . . END=1150911 GT:DP:GQ:MIN_DP:PL 0:45:64:45:0,64 +chrX 1150912 . G . . END=1150912 GT:DP:GQ:MIN_DP:PL 0:41:0:41:0,0 +chrX 1150913 . A . . END=1151183 GT:DP:GQ:MIN_DP:PL 0:60:64:59:0,64 +chrX 1151184 . C A, 31.04 . AS_QUALapprox=|41|0;AS_VarDP=35|35|0;BaseQRankSum=0.629;DP=70;MQRankSum=0.000;QUALapprox=41;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;ReadPosRankSum=2.303;VarDP=70 GT:AD:DP:GQ:PL:SB 1:35,35,0:70:41:41,0,1145:14,21,14,21 +chrX 1151185 . C . . END=1151290 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1771 +chrX 1151291 . C G, 171.04 . AS_QUALapprox=|181|0;AS_VarDP=25|32|0;BaseQRankSum=-1.898;DP=59;MQRankSum=0.000;QUALapprox=181;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;ReadPosRankSum=-0.193;VarDP=57 GT:AD:DP:GQ:PL:SB 1:25,32,0:57:99:181,0,1040:15,10,14,18 +chrX 1151292 . T . . END=1151443 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1080 +chrX 1151444 . GA G, 159.01 . AS_QUALapprox=|169|0;AS_VarDP=21|26|0;BaseQRankSum=-2.544;DP=50;MQRankSum=0.000;QUALapprox=169;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;ReadPosRankSum=0.188;VarDP=47 GT:AD:DP:GQ:PL:SB 1:21,26,0:47:99:169,0,1114:13,8,11,15 +chrX 1151446 . G . . END=1151447 GT:DP:GQ:MIN_DP:PL 0:47:99:47:0,1454 +chrX 1151448 . G GA, 192.01 . AS_QUALapprox=|202|0;AS_VarDP=21|27|0;BaseQRankSum=-2.679;DP=50;MQRankSum=0.000;QUALapprox=202;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;ReadPosRankSum=-0.052;VarDP=48 GT:AD:DP:GQ:PL:SB 1:21,27,0:48:99:202,0,1147:13,8,11,16 +chrX 1151449 . G . . END=1151707 GT:DP:GQ:MIN_DP:PL 0:47:99:47:0,138 +chrX 1151708 . A . . END=1151708 GT:DP:GQ:MIN_DP:PL 0:57:0:57:0,0 +chrX 1151709 . A . . END=1151988 GT:DP:GQ:MIN_DP:PL 0:62:59:62:0,59 +chrX 1151989 . T TTAAA, 370.01 . AS_QUALapprox=|380|0;AS_VarDP=17|28|0;BaseQRankSum=0.105;DP=49;MQRankSum=-0.733;QUALapprox=380;RAW_GT_COUNT=0,0,1;RAW_MQandDP=174400,49;ReadPosRankSum=-2.626;VarDP=45 GT:AD:DP:GQ:PL:SB 1:17,28,0:45:99:380,0,1094:4,13,10,18 +chrX 1151990 . A . . END=1152606 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,1211 +chrX 1152607 . G GCTCT, 2727.01 . AS_QUALapprox=|2737|0;AS_VarDP=0|62|0;DP=68;QUALapprox=2737;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244336,68;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:2737,0,2738:0,0,29,33 +chrX 1152608 . C . . END=1152631 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1800 +chrX 1152632 . G C, 1795.04 . AS_QUALapprox=|1805|0;AS_VarDP=1|57|0;BaseQRankSum=-0.438;DP=60;MQRankSum=0.000;QUALapprox=1805;RAW_GT_COUNT=0,0,1;RAW_MQandDP=215536,60;ReadPosRankSum=1.195;VarDP=58 GT:AD:DP:GQ:PL:SB 1:1,57,0:58:99:1805,0,1840:1,0,30,27 +chrX 1152633 . A . . END=1152756 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1795 +chrX 1152757 . G . . END=1152757 GT:DP:GQ:MIN_DP:PL 0:61:0:61:0,0 +chrX 1152758 . A . . END=1152777 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1672 +chrX 1152778 . A . . END=1152778 GT:DP:GQ:MIN_DP:PL 0:53:0:53:0,0 +chrX 1152779 . A . . END=1152830 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1063 +chrX 1152831 . C T, 755.04 . AS_QUALapprox=|765|0;AS_VarDP=1|18|0;BaseQRankSum=0.000;DP=19;MQRankSum=2.005;QUALapprox=765;RAW_GT_COUNT=0,0,1;RAW_MQandDP=53745,19;ReadPosRankSum=1.370;VarDP=19 GT:AD:DP:GQ:PL:SB 1:1,18,0:19:99:765,0,810:0,1,6,12 +chrX 1152832 . T . . END=1152851 GT:DP:GQ:MIN_DP:PL 0:19:99:19:0,626 +chrX 1152852 . G A, 755.04 . AS_QUALapprox=|765|0;AS_VarDP=1|18|0;BaseQRankSum=0.000;DP=19;MQRankSum=2.005;QUALapprox=765;RAW_GT_COUNT=0,0,1;RAW_MQandDP=53745,19;ReadPosRankSum=1.553;VarDP=19 GT:AD:DP:GQ:PL:SB 1:1,18,0:19:99:765,0,810:0,1,6,12 +chrX 1152853 . G . . END=1152856 GT:DP:GQ:MIN_DP:PL 0:18:99:18:0,591 +chrX 1152857 . G A, 755.04 . AS_QUALapprox=|765|0;AS_VarDP=0|17|0;DP=17;QUALapprox=765;RAW_GT_COUNT=0,0,1;RAW_MQandDP=49704,17;VarDP=17 GT:AD:DP:GQ:PL:SB 1:0,17,0:17:99:765,0,765:0,0,6,11 +chrX 1152858 . A . . END=1152860 GT:DP:GQ:MIN_DP:PL 0:16:99:16:0,556 +chrX 1152861 . A C, 710.04 . AS_QUALapprox=|720|0;AS_VarDP=0|16|0;DP=16;QUALapprox=720;RAW_GT_COUNT=0,0,1;RAW_MQandDP=46104,16;VarDP=16 GT:AD:DP:GQ:PL:SB 1:0,16,0:16:99:720,0,720:0,0,6,10 +chrX 1152862 . G A, 710.04 . AS_QUALapprox=|720|0;AS_VarDP=0|16|0;DP=16;QUALapprox=720;RAW_GT_COUNT=0,0,1;RAW_MQandDP=46104,16;VarDP=16 GT:AD:DP:GQ:PL:SB 1:0,16,0:16:99:720,0,720:0,0,6,10 +chrX 1152863 . G . . END=1152869 GT:DP:GQ:MIN_DP:PL 0:16:99:16:0,507 +chrX 1152870 . C T, 710.04 . AS_QUALapprox=|720|0;AS_VarDP=0|16|0;DP=16;QUALapprox=720;RAW_GT_COUNT=0,0,1;RAW_MQandDP=44921,16;VarDP=16 GT:AD:DP:GQ:PL:SB 1:0,16,0:16:99:720,0,720:0,0,7,9 +chrX 1152871 . A G, 710.04 . AS_QUALapprox=|720|0;AS_VarDP=0|16|0;DP=16;QUALapprox=720;RAW_GT_COUNT=0,0,1;RAW_MQandDP=44921,16;VarDP=16 GT:AD:DP:GQ:PL:SB 1:0,16,0:16:99:720,0,720:0,0,7,9 +chrX 1152872 . C . . END=1152872 GT:DP:GQ:MIN_DP:PL 0:15:99:15:0,522 +chrX 1152873 . T C, 665.04 . AS_QUALapprox=|675|0;AS_VarDP=0|15|0;DP=15;QUALapprox=675;RAW_GT_COUNT=0,0,1;RAW_MQandDP=41321,15;VarDP=15 GT:AD:DP:GQ:PL:SB 1:0,15,0:15:99:675,0,675:0,0,7,8 +chrX 1152874 . T . . END=1152890 GT:DP:GQ:MIN_DP:PL 0:15:99:15:0,442 +chrX 1152891 . G A, 615.04 . AS_QUALapprox=|625|0;AS_VarDP=2|15|0;BaseQRankSum=-0.400;DP=17;MQRankSum=0.371;QUALapprox=625;RAW_GT_COUNT=0,0,1;RAW_MQandDP=51637,17;ReadPosRankSum=1.492;VarDP=17 GT:AD:DP:GQ:PL:SB 1:2,15,0:17:99:625,0,675:2,0,9,6 +chrX 1152892 . A . . END=1152897 GT:DP:GQ:MIN_DP:PL 0:18:99:18:0,540 +chrX 1152898 . C G, 471.04 . AS_QUALapprox=|481|0;AS_VarDP=6|15|0;BaseQRankSum=-1.347;DP=21;MQRankSum=-1.115;QUALapprox=481;RAW_GT_COUNT=0,0,1;RAW_MQandDP=62338,21;ReadPosRankSum=1.813;VarDP=21 GT:AD:DP:GQ:PL:SB 1:6,15,0:21:99:481,0,665:4,2,8,7 +chrX 1152899 . T . . END=1153138 GT:DP:GQ:MIN_DP:PL 0:55:68:55:0,68 +chrX 1153139 . T G, 529.04 . AS_QUALapprox=|539|0;AS_VarDP=17|29|0;BaseQRankSum=0.190;DP=51;MQRankSum=0.000;QUALapprox=539;RAW_GT_COUNT=0,0,1;RAW_MQandDP=182704,51;ReadPosRankSum=1.071;VarDP=46 GT:AD:DP:GQ:PL:SB 1:17,29,0:46:99:539,0,1294:6,11,14,15 +chrX 1153140 . G . . END=1153147 GT:DP:GQ:MIN_DP:PL 0:46:99:46:0,1439 +chrX 1153148 . C T, 499.04 . AS_QUALapprox=|509|0;AS_VarDP=19|31|0;BaseQRankSum=2.017;DP=54;MQRankSum=0.000;QUALapprox=509;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;ReadPosRankSum=0.953;VarDP=50 GT:AD:DP:GQ:PL:SB 1:19,31,0:50:99:509,0,1354:7,12,15,16 +chrX 1153149 . G . . END=1153155 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,1504 +chrX 1153156 . A G, 489.04 . AS_QUALapprox=|499|0;AS_VarDP=19|31|0;BaseQRankSum=-1.079;DP=55;MQRankSum=0.000;QUALapprox=499;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;ReadPosRankSum=0.140;VarDP=50 GT:AD:DP:GQ:PL:SB 1:19,31,0:50:99:499,0,1344:8,11,14,17 +chrX 1153157 . G . . END=1153205 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,1574 +chrX 1153206 . T G, 472.04 . AS_QUALapprox=|482|0;AS_VarDP=20|33|0;BaseQRankSum=0.176;DP=57;MQRankSum=-0.740;QUALapprox=482;RAW_GT_COUNT=0,0,1;RAW_MQandDP=203200,57;ReadPosRankSum=-0.854;VarDP=53 GT:AD:DP:GQ:PL:SB 1:20,33,0:53:99:482,0,1372:9,11,16,17 +chrX 1153207 . G . . END=1153226 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,233 +chrX 1153227 . C T, 2176.04 . AS_QUALapprox=|2186|0;AS_VarDP=0|50|0;DP=53;QUALapprox=2186;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,50,0:50:99:2186,0,2186:0,0,25,25 +chrX 1153228 . T . . END=1153403 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,1276 +chrX 1153404 . G A, 251.04 . AS_QUALapprox=|261|0;AS_VarDP=20|29|0;BaseQRankSum=-0.838;DP=49;MQRankSum=-0.910;QUALapprox=261;RAW_GT_COUNT=0,0,1;RAW_MQandDP=170905,49;ReadPosRankSum=-0.784;VarDP=49 GT:AD:DP:GQ:PL:SB 1:20,29,0:49:99:261,0,914:6,14,10,19 +chrX 1153405 . G . . END=1153477 GT:DP:GQ:MIN_DP:PL 0:44:99:44:0,1169 +chrX 1153478 . A AAATAAT, 1806.01 . AS_QUALapprox=|1816|0;AS_VarDP=0|41|0;DP=57;QUALapprox=1816;RAW_GT_COUNT=0,0,1;RAW_MQandDP=203200,57;VarDP=41 GT:AD:DP:GQ:PL:SB 1:0,41,0:41:99:1816,0,1817:0,0,18,23 +chrX 1153479 . A . . END=1154356 GT:DP:GQ:MIN_DP:PL 0:62:30:59:0,30 +chrX 1154357 . C T, 185.04 . AS_QUALapprox=|195|0;AS_VarDP=7|14|0;BaseQRankSum=0.536;DP=24;MQRankSum=0.000;QUALapprox=195;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;ReadPosRankSum=-0.486;VarDP=21 GT:AD:DP:GQ:PL:SB 1:7,14,0:21:99:195,0,388:0,7,3,11 +chrX 1154358 . C . . END=1154367 GT:DP:GQ:MIN_DP:PL 0:16:99:16:0,487 +chrX 1154368 . A C, 628.04 . AS_QUALapprox=|638|0;AS_VarDP=0|16|0;DP=16;QUALapprox=638;RAW_GT_COUNT=0,0,1;RAW_MQandDP=57600,16;VarDP=16 GT:AD:DP:GQ:PL:SB 1:0,16,0:16:99:638,0,638:0,0,0,16 +chrX 1154369 . C . . END=1154424 GT:DP:GQ:MIN_DP:PL 0:11:90:11:0,90 +chrX 1154425 . C . . END=1154434 GT:DP:GQ:MIN_DP:PL 0:9:0:9:0,0 +chrX 1154435 . C . . END=1154440 GT:DP:GQ:MIN_DP:PL 0:5:45:5:0,45 +chrX 1154441 . T . . END=1154441 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 1154442 . C . . END=1154469 GT:DP:GQ:MIN_DP:PL 0:2:35:1:0,35 +chrX 1154470 . CT C, 80.01 . AS_QUALapprox=|90|0;AS_VarDP=4|6|0;BaseQRankSum=0.000;DP=17;MQRankSum=2.128;QUALapprox=90;RAW_GT_COUNT=0,0,1;RAW_MQandDP=48973,17;ReadPosRankSum=0.411;VarDP=10 GT:AD:DP:GQ:PL:SB 1:4,6,0:10:90:90,0,270:4,0,6,0 +chrX 1154472 . T . . END=1154473 GT:DP:GQ:MIN_DP:PL 0:10:99:10:0,180 +chrX 1154474 . T . . END=1154485 GT:DP:GQ:MIN_DP:PL 0:11:0:11:0,0 +chrX 1154486 . T TCCTCC, 2.94 . AS_QUALapprox=|99|0;AS_VarDP=0|3|0;DP=20;QUALapprox=99;RAW_GT_COUNT=0,0,1;RAW_MQandDP=64498,20;VarDP=3 GT:AD:DP:GQ:PL:SB 1:0,3,0:3:99:99,0,185:0,0,2,1 +chrX 1154487 . C . . END=1154493 GT:DP:GQ:MIN_DP:PL 0:12:0:12:0,0 +chrX 1154494 . T . . END=1154494 GT:DP:GQ:MIN_DP:PL 0:13:25:13:0,25 +chrX 1154495 . C . . END=1154497 GT:DP:GQ:MIN_DP:PL 0:13:15:13:0,15 +chrX 1154498 . C . . END=1154499 GT:DP:GQ:MIN_DP:PL 0:13:25:13:0,25 +chrX 1154500 . C . . END=1154542 GT:DP:GQ:MIN_DP:PL 0:11:0:11:0,0 +chrX 1154543 . C . . END=1155076 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,336 +chrX 1155077 . G C, 109.04 . AS_QUALapprox=|119|0;AS_VarDP=18|23|0;BaseQRankSum=-1.435;DP=41;MQRankSum=0.000;QUALapprox=119;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147600,41;ReadPosRankSum=0.250;VarDP=41 GT:AD:DP:GQ:PL:SB 1:18,23,0:41:99:119,0,734:10,8,12,11 +chrX 1155078 . C . . END=1155119 GT:DP:GQ:MIN_DP:PL 0:42:99:42:0,1092 +chrX 1155120 . GAAAA G, 466.01 . AS_QUALapprox=|476|0;AS_VarDP=15|27|0;BaseQRankSum=1.112;DP=55;MQRankSum=0.000;QUALapprox=476;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;ReadPosRankSum=2.618;VarDP=42 GT:AD:DP:GQ:PL:SB 1:15,27,0:42:99:476,0,1136:6,9,10,17 +chrX 1155125 . A . . END=1155733 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,99 +chrX 1155734 . C A, 0.03 . AS_QUALapprox=|3|0;AS_VarDP=38|38|0;BaseQRankSum=2.923;DP=77;MQRankSum=-1.007;QUALapprox=3;RAW_GT_COUNT=0,0,1;RAW_MQandDP=274902,77;ReadPosRankSum=-0.260;VarDP=76 GT:AD:DP:GQ:PL:SB 1:38,38,0:76:3:3,0,1690:22,16,29,9 +chrX 1155735 . G . . END=1155737 GT:DP:GQ:MIN_DP:PL 0:74:99:74:0,1800 +chrX 1155738 . A G, 15.04 . AS_QUALapprox=|25|0;AS_VarDP=37|38|0;BaseQRankSum=-0.687;DP=76;MQRankSum=-0.980;QUALapprox=25;RAW_GT_COUNT=0,0,1;RAW_MQandDP=271302,76;ReadPosRankSum=-0.044;VarDP=75 GT:AD:DP:GQ:PL:SB 1:37,38,0:75:25:25,0,1690:22,15,29,9 +chrX 1155739 . T . . END=1155743 GT:DP:GQ:MIN_DP:PL 0:73:99:73:0,1800 +chrX 1155744 . C . . END=1155744 GT:DP:GQ:MIN_DP:PL 0:72:19:72:0,19 +chrX 1155745 . C . . END=1155748 GT:DP:GQ:MIN_DP:PL 0:73:99:73:0,1800 +chrX 1155749 . G . . END=1155749 GT:DP:GQ:MIN_DP:PL 0:71:0:71:0,0 +chrX 1155750 . C . . END=1155978 GT:DP:GQ:MIN_DP:PL 0:82:99:82:0,215 +chrX 1155979 . A ATT, 564.01 . AS_QUALapprox=|574|0;AS_VarDP=11|27|0;BaseQRankSum=-0.775;DP=94;MQRankSum=0.416;QUALapprox=574;RAW_GT_COUNT=0,0,1;RAW_MQandDP=305354,94;ReadPosRankSum=-1.449;VarDP=38 GT:AD:DP:GQ:PL:SB 1:11,27,0:38:99:574,0,1589:7,4,8,19 +chrX 1155980 . T . . END=1156231 GT:DP:GQ:MIN_DP:PL 0:23:90:23:0,90 +chrX 1156232 . A G, 403.04 . AS_QUALapprox=|413|0;AS_VarDP=0|11|0;DP=11;QUALapprox=413;RAW_GT_COUNT=0,0,1;RAW_MQandDP=32246,11;VarDP=11 GT:AD:DP:GQ:PL:SB 1:0,11,0:11:99:413,0,413:0,0,5,6 +chrX 1156233 . T . . END=1156254 GT:DP:GQ:MIN_DP:PL 0:11:99:11:0,180 +chrX 1156255 . A ATT, 368.01 . AS_QUALapprox=|378|0;AS_VarDP=0|10|0;DP=12;QUALapprox=378;RAW_GT_COUNT=0,0,1;RAW_MQandDP=35597,12;VarDP=10 GT:AD:DP:GQ:PL:SB 1:0,10,0:10:99:378,0,378:0,0,5,5 +chrX 1156256 . T . . END=1156321 GT:DP:GQ:MIN_DP:PL 0:17:99:17:0,203 +chrX 1156322 . C G, 743.04 . AS_QUALapprox=|753|0;AS_VarDP=1|26|0;BaseQRankSum=1.994;DP=27;MQRankSum=0.000;QUALapprox=753;RAW_GT_COUNT=0,0,1;RAW_MQandDP=95200,27;ReadPosRankSum=-1.221;VarDP=27 GT:AD:DP:GQ:PL:SB 1:1,26,0:27:99:753,0,763:0,1,11,15 +chrX 1156323 . A . . END=1156475 GT:DP:GQ:MIN_DP:PL 0:60:65:48:0,65 +chrX 1156476 . G A, 2270.04 . AS_QUALapprox=|2280|0;AS_VarDP=0|62|0;DP=63;QUALapprox=2280;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:2280,0,2280:0,0,26,36 +chrX 1156477 . T . . END=1157031 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,124 +chrX 1157032 . C CA, 692.01 . AS_QUALapprox=|702|0;AS_VarDP=0|36|0;DP=52;QUALapprox=702;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183259,52;VarDP=36 GT:AD:DP:GQ:PL:SB 1:0,36,0:36:99:702,0,703:0,0,15,21 +chrX 1157033 . A . . END=1157456 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1400 +chrX 1157457 . T C, 1961.04 . AS_QUALapprox=|1971|0;AS_VarDP=0|63|0;DP=66;QUALapprox=1971;RAW_GT_COUNT=0,0,1;RAW_MQandDP=232484,66;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,63,0:63:99:1971,0,1971:0,0,32,31 +chrX 1157458 . G . . END=1157527 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1682 +chrX 1157528 . C T, 2674.04 . AS_QUALapprox=|2684|0;AS_VarDP=0|61|0;DP=63;QUALapprox=2684;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223409,63;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,61,0:61:99:2684,0,2684:0,0,32,29 +chrX 1157529 . G . . END=1157529 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1800 +chrX 1157530 . T G, 2674.04 . AS_QUALapprox=|2684|0;AS_VarDP=0|61|0;DP=63;QUALapprox=2684;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223409,63;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,61,0:61:99:2684,0,2684:0,0,32,29 +chrX 1157531 . G . . END=1157574 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1722 +chrX 1157575 . A G, 1885.04 . AS_QUALapprox=|1895|0;AS_VarDP=0|58|0;DP=60;QUALapprox=1895;RAW_GT_COUNT=0,0,1;RAW_MQandDP=215425,60;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,58,0:58:99:1895,0,1895:0,0,25,33 +chrX 1157576 . C . . END=1157782 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1678 +chrX 1157783 . A G, 1751.04 . AS_QUALapprox=|1761|0;AS_VarDP=0|54|0;DP=56;QUALapprox=1761;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201025,56;VarDP=54 GT:AD:DP:GQ:PL:SB 1:0,54,0:54:99:1761,0,1761:0,0,28,26 +chrX 1157784 . A . . END=1157892 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,1459 +chrX 1157893 . C T, 1975.04 . AS_QUALapprox=|1985|0;AS_VarDP=1|61|0;BaseQRankSum=2.482;DP=65;MQRankSum=-0.336;QUALapprox=1985;RAW_GT_COUNT=0,0,1;RAW_MQandDP=227107,65;ReadPosRankSum=1.677;VarDP=62 GT:AD:DP:GQ:PL:SB 1:1,61,0:62:99:1985,0,1994:1,0,26,35 +chrX 1157894 . G . . END=1157936 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1800 +chrX 1157937 . C T, 2107.04 . AS_QUALapprox=|2117|0;AS_VarDP=0|65|0;DP=68;QUALapprox=2117;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237907,68;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,65,0:65:99:2117,0,2117:0,0,30,35 +chrX 1157938 . C . . END=1158263 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1493 +chrX 1158264 . AAAAACAAAAC A, 1581.01 . AS_QUALapprox=|1591|0;AS_VarDP=0|37|0;DP=60;QUALapprox=1591;RAW_GT_COUNT=0,0,1;RAW_MQandDP=214000,60;VarDP=37 GT:AD:DP:GQ:PL:SB 1:0,37,0:37:99:1591,0,1591:0,0,17,20 +chrX 1158275 . A . . END=1158313 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,1439 +chrX 1158314 . A C, 1542.04 . AS_QUALapprox=|1552|0;AS_VarDP=0|50|0;DP=52;QUALapprox=1552;RAW_GT_COUNT=0,0,1;RAW_MQandDP=186500,52;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,50,0:50:99:1552,0,1552:0,0,29,21 +chrX 1158315 . G . . END=1158809 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1488 +chrX 1158810 . C T, 1891.04 . AS_QUALapprox=|1901|0;AS_VarDP=1|57|0;BaseQRankSum=2.897;DP=63;MQRankSum=-0.094;QUALapprox=1901;RAW_GT_COUNT=0,0,1;RAW_MQandDP=222800,63;ReadPosRankSum=-0.717;VarDP=58 GT:AD:DP:GQ:PL:SB 1:1,57,0:58:99:1901,0,1910:0,1,22,35 +chrX 1158811 . G . . END=1159309 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1519 +chrX 1159310 . A G, 1611.04 . AS_QUALapprox=|1621|0;AS_VarDP=1|55|0;BaseQRankSum=-0.640;DP=59;MQRankSum=0.000;QUALapprox=1621;RAW_GT_COUNT=0,0,1;RAW_MQandDP=211825,59;ReadPosRankSum=0.186;VarDP=56 GT:AD:DP:GQ:PL:SB 1:1,55,0:56:99:1621,0,1655:0,1,29,26 +chrX 1159311 . C . . END=1159455 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1644 +chrX 1159456 . C T, 2387.04 . AS_QUALapprox=|2397|0;AS_VarDP=0|55|0;DP=58;QUALapprox=2397;RAW_GT_COUNT=0,0,1;RAW_MQandDP=206225,58;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:2397,0,2397:0,0,22,33 +chrX 1159457 . G . . END=1159460 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1722 +chrX 1159461 . A G, 2353.04 . AS_QUALapprox=|2363|0;AS_VarDP=0|54|0;DP=57;QUALapprox=2363;RAW_GT_COUNT=0,0,1;RAW_MQandDP=202625,57;VarDP=54 GT:AD:DP:GQ:PL:SB 1:0,54,0:54:99:2363,0,2363:0,0,22,32 +chrX 1159462 . G . . END=1159738 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1120 +chrX 1159739 . G GAGAC, 1599.01 . AS_QUALapprox=|1609|0;AS_VarDP=0|36|0;DP=44;QUALapprox=1609;RAW_GT_COUNT=0,0,1;RAW_MQandDP=157009,44;VarDP=36 GT:AD:DP:GQ:PL:SB 1:0,36,0:36:99:1609,0,1609:0,0,12,24 +chrX 1159740 . A . . END=1159790 GT:DP:GQ:MIN_DP:PL 0:40:99:40:0,926 +chrX 1159791 . AAGAGAC A, 104.01 . AS_QUALapprox=|114|0;AS_VarDP=17|20|0;BaseQRankSum=1.493;DP=43;MQRankSum=0.000;QUALapprox=114;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154800,43;ReadPosRankSum=-1.585;VarDP=37 GT:AD:DP:GQ:PL:SB 1:17,20,0:37:99:114,0,879:6,11,10,10 +chrX 1159798 . A . . END=1160064 GT:DP:GQ:MIN_DP:PL 0:44:99:44:0,715 +chrX 1160065 . CAGAG C, 1124.01 . AS_QUALapprox=|1134|0;AS_VarDP=1|28|0;BaseQRankSum=-0.762;DP=38;MQRankSum=0.000;QUALapprox=1134;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136564,38;ReadPosRankSum=0.777;VarDP=29 GT:AD:DP:GQ:PL:SB 1:1,28,0:29:99:1134,0,1179:0,1,11,17 +chrX 1160070 . A . . END=1160319 GT:DP:GQ:MIN_DP:PL 0:46:99:46:0,773 +chrX 1160320 . G A,GGAGA, 1372.01 . AS_QUALapprox=|0|1382|0;AS_VarDP=2|0|35|0;BaseQRankSum=0.864;DP=46;MQRankSum=4.424;QUALapprox=1382;RAW_GT_COUNT=0,0,1;RAW_MQandDP=155534,46;ReadPosRankSum=-0.639;VarDP=37 GT:AD:DP:GQ:PL:SB 2:2,0,35,0:37:99:1382,1913,0,1693:1,1,21,14 +chrX 1160321 . G . . END=1160532 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,809 +chrX 1160533 . C CAGAGAG, 804.01 . AS_QUALapprox=|814|0;AS_VarDP=2|21|0;DP=31;MQRankSum=-0.466;QUALapprox=814;RAW_GT_COUNT=0,0,1;RAW_MQandDP=94520,31;VarDP=23 GT:AD:DP:GQ:PL:SB 1:2,21,0:23:99:814,0,904:1,1,5,16 +chrX 1160534 . A . . END=1160554 GT:DP:GQ:MIN_DP:PL 0:21:99:21:0,606 +chrX 1160555 . GAGAGAC G, 401.01 . AS_QUALapprox=|411|0;AS_VarDP=7|15|0;BaseQRankSum=0.491;DP=28;MQRankSum=1.348;QUALapprox=411;RAW_GT_COUNT=0,0,1;RAW_MQandDP=80542,28;ReadPosRankSum=2.231;VarDP=22 GT:AD:DP:GQ:PL:SB 1:7,15,0:22:99:411,0,675:4,3,4,11 +chrX 1160562 . A . . END=1160795 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,649 +chrX 1160796 . G GGAGA, 1593.01 . AS_QUALapprox=|1603|0;AS_VarDP=0|36|0;DP=61;QUALapprox=1603;RAW_GT_COUNT=0,0,1;RAW_MQandDP=211274,61;VarDP=36 GT:AD:DP:GQ:PL:SB 1:0,36,0:36:99:1603,0,1620:0,0,18,18 +chrX 1160797 . G . . END=1160822 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,479 +chrX 1160823 . C CAG, 1763.01 . AS_QUALapprox=|2434|0;AS_VarDP=0|55|0;DP=58;QUALapprox=2434;RAW_GT_COUNT=0,0,1;RAW_MQandDP=200474,58;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:2434,0,2094:0,0,18,21 +chrX 1160824 . A . . END=1160846 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,321 +chrX 1160847 . CAGAG C, 1489.04 . AS_QUALapprox=|1665|0;AS_VarDP=1|39|0;BaseQRankSum=1.702;DP=78;MQRankSum=4.060;QUALapprox=1665;RAW_GT_COUNT=0,0,1;RAW_MQandDP=271578,78;ReadPosRankSum=0.248;VarDP=40 GT:AD:DP:GQ:PL:SB 1:1,39,0:40:99:1665,0,1598:1,0,16,18 +chrX 1160852 . A . . END=1161438 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1270 +chrX 1161439 . G A, 1941.04 . AS_QUALapprox=|1951|0;AS_VarDP=0|59|0;DP=60;QUALapprox=1951;RAW_GT_COUNT=0,0,1;RAW_MQandDP=215425,60;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:1951,0,1951:0,0,27,32 +chrX 1161440 . C . . END=1161503 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1707 +chrX 1161504 . C CATAT, 2301.01 . AS_QUALapprox=|2311|0;AS_VarDP=1|53|0;BaseQRankSum=2.419;DP=59;MQRankSum=4.202;QUALapprox=2311;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208725,59;ReadPosRankSum=0.064;VarDP=54 GT:AD:DP:GQ:PL:SB 1:1,53,0:54:99:2311,0,2356:1,0,26,27 +chrX 1161505 . A . . END=1161528 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1787 +chrX 1161529 . G A, 2511.04 . AS_QUALapprox=|2521|0;AS_VarDP=1|60|0;BaseQRankSum=-0.239;DP=61;MQRankSum=5.431;QUALapprox=2521;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216500,61;ReadPosRankSum=-1.051;VarDP=61 GT:AD:DP:GQ:PL:SB 1:1,60,0:61:99:2521,0,2566:1,0,32,28 +chrX 1161530 . T . . END=1161598 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,151 +chrX 1161599 . CACATAT C, 2577.01 . AS_QUALapprox=|2587|0;AS_VarDP=0|58|0;DP=66;QUALapprox=2587;RAW_GT_COUNT=0,0,1;RAW_MQandDP=235150,66;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,58,0:58:99:2587,0,2587:0,0,27,31 +chrX 1161606 . A . . END=1162359 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1100 +chrX 1162360 . T G, 2279.04 . AS_QUALapprox=|2289|0;AS_VarDP=0|68|0;DP=70;QUALapprox=2289;RAW_GT_COUNT=0,0,1;RAW_MQandDP=251425,70;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,68,0:68:99:2289,0,2289:0,0,35,33 +chrX 1162361 . A . . END=1162833 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1220 +chrX 1162834 . A G, 1553.04 . AS_QUALapprox=|1563|0;AS_VarDP=0|35|0;DP=47;QUALapprox=1563;RAW_GT_COUNT=0,0,1;RAW_MQandDP=168050,47;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,35,0:35:99:1563,0,1564:0,0,20,15 +chrX 1162835 . G . . END=1162838 GT:DP:GQ:MIN_DP:PL 0:45:99:45:0,1415 +chrX 1162839 . G GA, 1554.01 . AS_QUALapprox=|1564|0;AS_VarDP=0|35|0;DP=47;QUALapprox=1564;RAW_GT_COUNT=0,0,1;RAW_MQandDP=168625,47;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,35,0:35:99:1564,0,1564:0,0,20,15 +chrX 1162840 . A . . END=1162841 GT:DP:GQ:MIN_DP:PL 0:46:99:46:0,1498 +chrX 1162842 . G A,GGAAAA, 1869.04 . AS_QUALapprox=|1879|190|0;AS_VarDP=0|35|0|0;DP=46;QUALapprox=1879;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165025,46;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,35,0,0:35:99:1879,0,1689,1784:0,0,20,15 +chrX 1162843 . G . . END=1162908 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1424 +chrX 1162909 . C T, 1729.04 . AS_QUALapprox=|1739|0;AS_VarDP=0|54|0;DP=56;QUALapprox=1739;RAW_GT_COUNT=0,0,1;RAW_MQandDP=200450,56;VarDP=54 GT:AD:DP:GQ:PL:SB 1:0,54,0:54:99:1739,0,1739:0,0,36,18 +chrX 1162910 . G . . END=1163127 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1691 +chrX 1163128 . A G, 1938.04 . AS_QUALapprox=|1948|0;AS_VarDP=0|60|0;DP=62;QUALapprox=1948;RAW_GT_COUNT=0,0,1;RAW_MQandDP=220896,62;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:1948,0,1948:0,0,29,31 +chrX 1163129 . G . . END=1163760 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,684 +chrX 1163761 . G GAGGGAGGA, 1591.01 . AS_QUALapprox=|1601|0;AS_VarDP=1|37|0;DP=43;MQRankSum=0.000;QUALapprox=1601;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154800,43;VarDP=38 GT:AD:DP:GQ:PL:SB 1:1,37,0:38:99:1601,0,1612:0,1,29,8 +chrX 1163762 . A . . END=1163885 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,919 +chrX 1163886 . T A, 1779.04 . AS_QUALapprox=|1789|0;AS_VarDP=0|40|0;DP=41;QUALapprox=1789;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140297,41;VarDP=40 GT:AD:DP:GQ:PL:SB 1:0,40,0:40:99:1789,0,1789:0,0,19,21 +chrX 1163887 . G . . END=1163894 GT:DP:GQ:MIN_DP:PL 0:41:99:41:0,784 +chrX 1163895 . T G, 1448.04 . AS_QUALapprox=|1899|0;AS_VarDP=0|43|0;DP=44;QUALapprox=1899;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151097,44;VarDP=43 GT:AD:DP:GQ:PL:SB 1:0,43,0:43:99:1899,0,1664:0,0,18,14 +chrX 1163896 . G . . END=1163910 GT:DP:GQ:MIN_DP:PL 0:44:99:44:0,724 +chrX 1163911 . G C,GAGAACAGAAC,GAACAGAACAGAACAGAAC,GAGAACAGAACAGAACAGAACAGAACAGAAC, 296.01 . AS_QUALapprox=|0|218|306|57|0;AS_VarDP=0|0|9|10|0|0;DP=52;QUALapprox=306;RAW_GT_COUNT=0,0,1;RAW_MQandDP=175899,52;VarDP=19 GT:AD:DP:GQ:PL:SB 3:0,0,9,10,0,0:19:88:306,660,88,0,249,697:0,0,10,9 +chrX 1163912 . A . . END=1164149 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,943 +chrX 1164150 . AG A, 2123.01 . AS_QUALapprox=|2133|0;AS_VarDP=0|57|0;DP=66;QUALapprox=2133;RAW_GT_COUNT=0,0,1;RAW_MQandDP=235600,66;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:2133,0,2133:0,0,27,30 +chrX 1164152 . G . . END=1165256 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1473 +chrX 1165257 . T A, 2547.04 . AS_QUALapprox=|2557|0;AS_VarDP=0|69|0;DP=72;QUALapprox=2557;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,69,0:69:99:2557,0,2557:0,0,36,33 +chrX 1165258 . A . . END=1165631 GT:DP:GQ:MIN_DP:PL 0:81:99:81:0,425 +chrX 1165632 . G T, 2720.04 . AS_QUALapprox=|2730|0;AS_VarDP=0|82|0;DP=82;QUALapprox=2730;RAW_GT_COUNT=0,0,1;RAW_MQandDP=295200,82;VarDP=82 GT:AD:DP:GQ:PL:SB 1:0,82,0:82:99:2730,0,2730:0,0,36,46 +chrX 1165633 . A . . END=1165705 GT:DP:GQ:MIN_DP:PL 0:77:99:77:0,1800 +chrX 1165706 . A G, 2391.04 . AS_QUALapprox=|2401|0;AS_VarDP=0|73|0;DP=77;QUALapprox=2401;RAW_GT_COUNT=0,0,1;RAW_MQandDP=277200,77;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,73,0:73:99:2401,0,2401:0,0,40,33 +chrX 1165707 . A . . END=1166212 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1658 +chrX 1166213 . T C, 2027.04 . AS_QUALapprox=|2037|0;AS_VarDP=0|64|0;DP=65;QUALapprox=2037;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,64,0:64:99:2037,0,2037:0,0,30,34 +chrX 1166214 . C . . END=1166298 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1531 +chrX 1166299 . G GT, 1273.01 . AS_QUALapprox=|1283|0;AS_VarDP=0|50|0;DP=63;QUALapprox=1283;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219085,63;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,50,0:50:99:1283,0,1283:0,0,25,25 +chrX 1166300 . T . . END=1166310 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1720 +chrX 1166311 . G GT, 1052.01 . AS_QUALapprox=|1062|0;AS_VarDP=0|44|0;DP=59;QUALapprox=1062;RAW_GT_COUNT=0,0,1;RAW_MQandDP=204110,59;VarDP=44 GT:AD:DP:GQ:PL:SB 1:0,44,0:44:99:1062,0,1062:0,0,23,21 +chrX 1166312 . T . . END=1166370 GT:DP:GQ:MIN_DP:PL 0:44:70:44:0,70 +chrX 1166371 . G . . END=1166371 GT:DP:GQ:MIN_DP:PL 0:46:0:46:0,0 +chrX 1166372 . A . . END=1166391 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,1538 +chrX 1166392 . C T, 1957.04 . AS_QUALapprox=|1967|0;AS_VarDP=0|52|0;DP=55;QUALapprox=1967;RAW_GT_COUNT=0,0,1;RAW_MQandDP=191175,55;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:1967,0,1967:0,0,18,34 +chrX 1166393 . C . . END=1166426 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1677 +chrX 1166427 . C T, 105.04 . AS_QUALapprox=|115|0;AS_VarDP=27|30|0;BaseQRankSum=-0.126;DP=59;MQRankSum=-0.210;QUALapprox=115;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205575,59;ReadPosRankSum=-1.375;VarDP=57 GT:AD:DP:GQ:PL:SB 1:27,30,0:57:99:115,0,1002:10,17,12,18 +chrX 1166428 . C . . END=1166445 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1800 +chrX 1166446 . G T, 2248.04 . AS_QUALapprox=|2258|0;AS_VarDP=1|57|0;BaseQRankSum=3.067;DP=59;MQRankSum=-0.245;QUALapprox=2258;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208550,59;ReadPosRankSum=1.554;VarDP=58 GT:AD:DP:GQ:PL:SB 1:1,57,0:58:99:2258,0,2268:0,1,25,32 +chrX 1166447 . A . . END=1166468 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1726 +chrX 1166469 . G C, 105.04 . AS_QUALapprox=|115|0;AS_VarDP=29|32|0;BaseQRankSum=-0.197;DP=62;MQRankSum=-1.334;QUALapprox=115;RAW_GT_COUNT=0,0,1;RAW_MQandDP=222389,62;ReadPosRankSum=-0.477;VarDP=61 GT:AD:DP:GQ:PL:SB 1:29,32,0:61:99:115,0,1017:13,16,11,21 +chrX 1166470 . A . . END=1166605 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1707 +chrX 1166606 . A C, 1647.04 . AS_QUALapprox=|1657|0;AS_VarDP=0|52|0;DP=57;QUALapprox=1657;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:1657,0,1657:0,0,23,29 +chrX 1166607 . G . . END=1166688 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,1365 +chrX 1166689 . C A, 1628.04 . AS_QUALapprox=|1638|0;AS_VarDP=1|50|0;BaseQRankSum=2.504;DP=52;MQRankSum=0.000;QUALapprox=1638;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;ReadPosRankSum=1.733;VarDP=51 GT:AD:DP:GQ:PL:SB 1:1,50,0:51:99:1638,0,1663:0,1,33,17 +chrX 1166690 . A . . END=1166729 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,1547 +chrX 1166730 . T A, 2062.04 . AS_QUALapprox=|2072|0;AS_VarDP=0|49|0;DP=52;QUALapprox=2072;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=49 GT:AD:DP:GQ:PL:SB 1:0,49,0:49:99:2072,0,2072:0,0,32,17 +chrX 1166731 . T . . END=1166753 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,1279 +chrX 1166754 . C T, 1960.04 . AS_QUALapprox=|1970|0;AS_VarDP=0|44|0;DP=45;QUALapprox=1970;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162000,45;VarDP=44 GT:AD:DP:GQ:PL:SB 1:0,44,0:44:99:1970,0,1970:0,0,29,15 +chrX 1166755 . A . . END=1166774 GT:DP:GQ:MIN_DP:PL 0:43:99:43:0,1332 +chrX 1166775 . G A, 1917.04 . AS_QUALapprox=|1927|0;AS_VarDP=0|46|0;DP=50;QUALapprox=1927;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=46 GT:AD:DP:GQ:PL:SB 1:0,46,0:46:99:1927,0,1927:0,0,26,20 +chrX 1166776 . C . . END=1166961 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1588 +chrX 1166962 . T A, 1638.04 . AS_QUALapprox=|1648|0;AS_VarDP=0|48|0;DP=50;QUALapprox=1648;RAW_GT_COUNT=0,0,1;RAW_MQandDP=179425,50;VarDP=48 GT:AD:DP:GQ:PL:SB 1:0,48,0:48:99:1648,0,1648:0,0,25,23 +chrX 1166963 . A . . END=1167042 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,282 +chrX 1167043 . ATATAT A, 468.04 . AS_QUALapprox=|1251|0;AS_VarDP=0|28|0;DP=54;QUALapprox=1251;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:1251,0,1302:0,0,15,13 +chrX 1167049 . T . . END=1167175 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1354 +chrX 1167176 . A . . END=1167176 GT:DP:GQ:MIN_DP:PL 0:69:19:69:0,19 +chrX 1167177 . T . . END=1167200 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1800 +chrX 1167201 . ATATATTATATATAT A, 2309.01 . AS_QUALapprox=|2319|0;AS_VarDP=0|52|0;DP=64;QUALapprox=2319;RAW_GT_COUNT=0,0,1;RAW_MQandDP=227425,64;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:2319,0,2319:0,0,22,30 +chrX 1167216 . T . . END=1167228 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1667 +chrX 1167229 . T C, 68.04 . AS_QUALapprox=|78|0;AS_VarDP=23|28|0;BaseQRankSum=-2.137;DP=57;MQRankSum=0.000;QUALapprox=78;RAW_GT_COUNT=0,0,1;RAW_MQandDP=202225,57;ReadPosRankSum=1.231;VarDP=51 GT:AD:DP:GQ:PL:SB 1:23,28,0:51:78:78,0,842:10,13,12,16 +chrX 1167230 . A . . END=1167296 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,1260 +chrX 1167297 . C T, 1665.04 . AS_QUALapprox=|1675|0;AS_VarDP=0|52|0;DP=56;QUALapprox=1675;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:1675,0,1675:0,0,24,28 +chrX 1167298 . A . . END=1167370 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,1285 +chrX 1167371 . C A, 1697.04 . AS_QUALapprox=|1707|0;AS_VarDP=0|52|0;DP=53;QUALapprox=1707;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:1707,0,1707:0,0,25,27 +chrX 1167372 . G . . END=1168234 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,956 +chrX 1168235 . C T, 1708.04 . AS_QUALapprox=|1718|0;AS_VarDP=0|53|0;DP=57;QUALapprox=1718;RAW_GT_COUNT=0,0,1;RAW_MQandDP=204625,57;VarDP=53 GT:AD:DP:GQ:PL:SB 1:0,53,0:53:99:1718,0,1718:0,0,18,35 +chrX 1168236 . C . . END=1168503 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1308 +chrX 1168504 . AGC A, 2319.01 . AS_QUALapprox=|2329|0;AS_VarDP=0|52|0;DP=58;QUALapprox=2329;RAW_GT_COUNT=0,0,1;RAW_MQandDP=196204,58;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:2329,0,2329:0,0,22,30 +chrX 1168507 . G . . END=1168520 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,1554 +chrX 1168521 . C A,T, 1580.04 . AS_QUALapprox=|1590|1332|0;AS_VarDP=0|28|20|0;DP=52;QUALapprox=1590;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172734,52;VarDP=48 GT:AD:DP:GQ:PL:SB 1:0,28,20,0:48:99:1590,0,258,1289:0,0,21,27 +chrX 1168522 . A G, 2230.04 . AS_QUALapprox=|2240|0;AS_VarDP=0|50|0;DP=52;QUALapprox=2240;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172734,52;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,50,0:50:99:2240,0,2240:0,0,23,27 +chrX 1168523 . C . . END=1168542 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,1533 +chrX 1168543 . C A, 2038.04 . AS_QUALapprox=|2048|0;AS_VarDP=0|48|0;DP=48;QUALapprox=2048;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158334,48;VarDP=48 GT:AD:DP:GQ:PL:SB 1:0,48,0:48:99:2048,0,2048:0,0,21,27 +chrX 1168544 . T . . END=1168653 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1470 +chrX 1168654 . G A, 1634.04 . AS_QUALapprox=|1644|0;AS_VarDP=0|51|0;DP=52;QUALapprox=1644;RAW_GT_COUNT=0,0,1;RAW_MQandDP=181596,52;VarDP=51 GT:AD:DP:GQ:PL:SB 1:0,51,0:51:99:1644,0,1644:0,0,21,30 +chrX 1168655 . G . . END=1168887 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,1025 +chrX 1168888 . T C, 981.04 . AS_QUALapprox=|991|0;AS_VarDP=0|33|0;DP=49;QUALapprox=991;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176164,49;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:991,0,991:0,0,13,20 +chrX 1168889 . A . . END=1168933 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,666 +chrX 1168934 . T G, 204.04 . AS_QUALapprox=|214|0;AS_VarDP=8|14|0;BaseQRankSum=0.628;DP=36;MQRankSum=0.000;QUALapprox=214;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129600,36;ReadPosRankSum=1.229;VarDP=22 GT:AD:DP:GQ:PL:SB 1:8,14,0:22:99:214,0,447:2,6,7,7 +chrX 1168935 . A . . END=1169026 GT:DP:GQ:MIN_DP:PL 0:11:80:11:0,80 +chrX 1169027 . A . . END=1169029 GT:DP:GQ:MIN_DP:PL 0:29:0:29:0,0 +chrX 1169030 . A . . END=1169031 GT:DP:GQ:MIN_DP:PL 0:30:43:30:0,43 +chrX 1169032 . A . . END=1169032 GT:DP:GQ:MIN_DP:PL 0:32:0:32:0,0 +chrX 1169033 . A . . END=1169034 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,675 +chrX 1169035 . A . . END=1169035 GT:DP:GQ:MIN_DP:PL 0:31:0:31:0,0 +chrX 1169036 . G . . END=1169037 GT:DP:GQ:MIN_DP:PL 0:32:49:32:0,49 +chrX 1169038 . A . . END=1169038 GT:DP:GQ:MIN_DP:PL 0:34:0:34:0,0 +chrX 1169039 . G . . END=1169042 GT:DP:GQ:MIN_DP:PL 0:34:49:34:0,49 +chrX 1169043 . G . . END=1169043 GT:DP:GQ:MIN_DP:PL 0:35:4:35:0,4 +chrX 1169044 . A . . END=1169046 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,630 +chrX 1169047 . T . . END=1169047 GT:DP:GQ:MIN_DP:PL 0:35:0:35:0,0 +chrX 1169048 . G . . END=1169053 GT:DP:GQ:MIN_DP:PL 0:35:60:35:0,60 +chrX 1169054 . A . . END=1169054 GT:DP:GQ:MIN_DP:PL 0:30:19:30:0,19 +chrX 1169055 . G . . END=1169066 GT:DP:GQ:MIN_DP:PL 0:31:44:31:0,44 +chrX 1169067 . T . . END=1169067 GT:DP:GQ:MIN_DP:PL 0:26:7:26:0,7 +chrX 1169068 . C . . END=1169134 GT:DP:GQ:MIN_DP:PL 0:24:93:24:0,93 +chrX 1169135 . GGGA G, 206.01 . AS_QUALapprox=|216|0;AS_VarDP=2|7|0;BaseQRankSum=-0.157;DP=16;MQRankSum=1.221;QUALapprox=216;RAW_GT_COUNT=0,0,1;RAW_MQandDP=56500,16;ReadPosRankSum=0.157;VarDP=9 GT:AD:DP:GQ:PL:SB 1:2,7,0:9:99:216,0,306:0,2,7,0 +chrX 1169139 . G . . END=1169425 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,99 +chrX 1169426 . G T, 81.04 . AS_QUALapprox=|91|0;AS_VarDP=22|24|0;BaseQRankSum=0.653;DP=48;MQRankSum=0.000;QUALapprox=91;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;ReadPosRankSum=0.352;VarDP=46 GT:AD:DP:GQ:PL:SB 1:22,24,0:46:91:91,0,794:15,7,15,9 +chrX 1169427 . T . . END=1169516 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1468 +chrX 1169517 . G T, 0 . AS_QUALapprox=|63|0;AS_VarDP=25|26|0;BaseQRankSum=0.594;DP=55;MQRankSum=0.000;QUALapprox=63;RAW_GT_COUNT=0,0,1;RAW_MQandDP=195129,55;ReadPosRankSum=1.343;VarDP=51 GT:AD:DP:GQ:PL:SB 1:25,26,0:51:63:63,0,682:13,12,2,0 +chrX 1169518 . C . . END=1169812 GT:DP:GQ:MIN_DP:PL 0:47:99:47:0,323 +chrX 1169813 . CTT C,CT, 1013.01 . AS_QUALapprox=|1023|755|0;AS_VarDP=0|28|18|0;DP=54;QUALapprox=1023;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=46 GT:AD:DP:GQ:PL:SB 1:0,28,18,0:46:99:1023,0,268,899:0,0,26,20 +chrX 1169816 . T . . END=1169844 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,1443 +chrX 1169845 . A AT, 174.01 . AS_QUALapprox=|184|0;AS_VarDP=20|27|0;BaseQRankSum=1.637;DP=51;MQRankSum=0.000;QUALapprox=184;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;ReadPosRankSum=-1.098;VarDP=47 GT:AD:DP:GQ:PL:SB 1:20,27,0:47:99:184,0,784:11,9,16,11 +chrX 1169846 . T . . END=1170082 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1457 +chrX 1170083 . TTTTTTTC T, 132.01 . AS_QUALapprox=|142|0;AS_VarDP=19|22|0;BaseQRankSum=-0.722;DP=56;MQRankSum=-0.140;QUALapprox=142;RAW_GT_COUNT=0,0,1;RAW_MQandDP=193555,56;ReadPosRankSum=-0.542;VarDP=41 GT:AD:DP:GQ:PL:SB 1:19,22,0:41:99:142,0,950:12,7,7,15 +chrX 1170091 . T . . END=1170107 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,823 +chrX 1170108 . G A, 347.04 . AS_QUALapprox=|357|0;AS_VarDP=17|25|0;BaseQRankSum=0.471;DP=45;MQRankSum=-1.002;QUALapprox=357;RAW_GT_COUNT=0,0,1;RAW_MQandDP=157055,45;ReadPosRankSum=-0.201;VarDP=42 GT:AD:DP:GQ:PL:SB 1:17,25,0:42:99:357,0,1053:7,10,9,16 +chrX 1170109 . G . . END=1170146 GT:DP:GQ:MIN_DP:PL 0:46:99:46:0,1195 +chrX 1170147 . G A, 300.04 . AS_QUALapprox=|310|0;AS_VarDP=21|28|0;BaseQRankSum=0.014;DP=50;MQRankSum=-1.766;QUALapprox=310;RAW_GT_COUNT=0,0,1;RAW_MQandDP=175739,50;ReadPosRankSum=0.930;VarDP=49 GT:AD:DP:GQ:PL:SB 1:21,28,0:49:99:310,0,1229:10,11,9,19 +chrX 1170148 . C . . END=1170151 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,1498 +chrX 1170152 . C G, 310.04 . AS_QUALapprox=|320|0;AS_VarDP=21|28|0;BaseQRankSum=-0.731;DP=50;MQRankSum=-1.766;QUALapprox=320;RAW_GT_COUNT=0,0,1;RAW_MQandDP=175739,50;ReadPosRankSum=0.647;VarDP=49 GT:AD:DP:GQ:PL:SB 1:21,28,0:49:99:320,0,1239:10,11,8,20 +chrX 1170153 . T . . END=1171765 GT:DP:GQ:MIN_DP:PL 0:67:51:51:0,51 +chrX 1171766 . G . . END=1171766 GT:DP:GQ:MIN_DP:PL 0:72:16:72:0,16 +chrX 1171767 . T . . END=1172162 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1797 +chrX 1172163 . C T, 131.04 . AS_QUALapprox=|141|0;AS_VarDP=30|32|0;BaseQRankSum=1.398;DP=67;MQRankSum=0.000;QUALapprox=141;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;ReadPosRankSum=0.874;VarDP=62 GT:AD:DP:GQ:PL:SB 1:30,32,0:62:99:141,0,1042:12,18,14,18 +chrX 1172164 . G . . END=1172370 GT:DP:GQ:MIN_DP:PL 0:41:99:41:0,1063 +chrX 1172371 . C A, 224.04 . AS_QUALapprox=|234|0;AS_VarDP=18|24|0;BaseQRankSum=1.203;DP=43;MQRankSum=0.000;QUALapprox=234;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154800,43;ReadPosRankSum=-0.165;VarDP=42 GT:AD:DP:GQ:PL:SB 1:18,24,0:42:99:234,0,834:9,9,11,13 +chrX 1172372 . T . . END=1172434 GT:DP:GQ:MIN_DP:PL 0:47:99:47:0,1346 +chrX 1172435 . T . . END=1172435 GT:DP:GQ:MIN_DP:PL 0:54:0:54:0,0 +chrX 1172436 . T . . END=1172509 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1558 +chrX 1172510 . C G, 88.04 . AS_QUALapprox=|98|0;AS_VarDP=25|28|0;BaseQRankSum=0.533;DP=54;MQRankSum=0.000;QUALapprox=98;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;ReadPosRankSum=0.945;VarDP=53 GT:AD:DP:GQ:PL:SB 1:25,28,0:53:98:98,0,1211:14,11,15,13 +chrX 1172511 . G . . END=1172512 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,1535 +chrX 1172513 . T G, 55.04 . AS_QUALapprox=|65|0;AS_VarDP=25|27|0;BaseQRankSum=-0.990;DP=52;MQRankSum=0.000;QUALapprox=65;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;ReadPosRankSum=1.145;VarDP=52 GT:AD:DP:GQ:PL:SB 1:25,27,0:52:65:65,0,1178:14,11,14,13 +chrX 1172514 . G . . END=1173462 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1308 +chrX 1173463 . C G, 2079.04 . AS_QUALapprox=|2089|0;AS_VarDP=1|66|0;BaseQRankSum=2.190;DP=67;MQRankSum=2.874;QUALapprox=2089;RAW_GT_COUNT=0,0,1;RAW_MQandDP=231802,67;ReadPosRankSum=-0.595;VarDP=67 GT:AD:DP:GQ:PL:SB 1:1,66,0:67:99:2089,0,2098:1,0,41,25 +chrX 1173464 . G . . END=1173474 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1800 +chrX 1173475 . G A, 2192.04 . AS_QUALapprox=|2202|0;AS_VarDP=0|68|0;DP=74;QUALapprox=2202;RAW_GT_COUNT=0,0,1;RAW_MQandDP=257002,74;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,68,0:68:99:2202,0,2202:0,0,40,28 +chrX 1173476 . C . . END=1173763 GT:DP:GQ:MIN_DP:PL 0:79:99:79:0,1800 +chrX 1173764 . C T, 1132.04 . AS_QUALapprox=|1142|0;AS_VarDP=22|49|0;BaseQRankSum=3.613;DP=71;MQRankSum=2.538;QUALapprox=1142;RAW_GT_COUNT=0,0,1;RAW_MQandDP=178915,71;ReadPosRankSum=-1.008;VarDP=71 GT:AD:DP:GQ:PL:SB 1:22,49,0:71:99:1142,0,2039:9,13,11,38 +chrX 1173765 . A . . END=1173765 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1800 +chrX 1173766 . C G, 1132.04 . AS_QUALapprox=|1142|0;AS_VarDP=23|50|0;BaseQRankSum=2.530;DP=73;MQRankSum=2.456;QUALapprox=1142;RAW_GT_COUNT=0,0,1;RAW_MQandDP=181725,73;ReadPosRankSum=-1.129;VarDP=73 GT:AD:DP:GQ:PL:SB 1:23,50,0:73:99:1142,0,2084:9,14,11,39 +chrX 1173767 . G . . END=1173772 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1800 +chrX 1173773 . C T, 1037.04 . AS_QUALapprox=|1047|0;AS_VarDP=22|46|0;BaseQRankSum=2.520;DP=68;MQRankSum=2.032;QUALapprox=1047;RAW_GT_COUNT=0,0,1;RAW_MQandDP=159250,68;ReadPosRankSum=-0.978;VarDP=68 GT:AD:DP:GQ:PL:SB 1:22,46,0:68:99:1047,0,1965:8,14,9,37 +chrX 1173774 . G . . END=1173811 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,567 +chrX 1173812 . G A, 479.04 . AS_QUALapprox=|489|0;AS_VarDP=24|34|0;BaseQRankSum=2.199;DP=58;MQRankSum=0.807;QUALapprox=489;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108350,58;ReadPosRankSum=-1.246;VarDP=58 GT:AD:DP:GQ:PL:SB 1:24,34,0:58:99:489,0,1514:6,18,5,29 +chrX 1173813 . T . . END=1173831 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,1562 +chrX 1173832 . T C, 469.04 . AS_QUALapprox=|479|0;AS_VarDP=20|31|0;BaseQRankSum=1.738;DP=51;MQRankSum=-0.068;QUALapprox=479;RAW_GT_COUNT=0,0,1;RAW_MQandDP=85842,51;ReadPosRankSum=-0.099;VarDP=51 GT:AD:DP:GQ:PL:SB 1:20,31,0:51:99:479,0,1379:5,15,5,26 +chrX 1173833 . C . . END=1173851 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,1558 +chrX 1173852 . T C, 694.04 . AS_QUALapprox=|704|0;AS_VarDP=18|34|0;BaseQRankSum=1.508;DP=52;MQRankSum=0.174;QUALapprox=704;RAW_GT_COUNT=0,0,1;RAW_MQandDP=92800,52;ReadPosRankSum=0.602;VarDP=52 GT:AD:DP:GQ:PL:SB 1:18,34,0:52:99:704,0,1514:4,14,6,28 +chrX 1173853 . G C, 649.04 . AS_QUALapprox=|659|0;AS_VarDP=18|33|0;BaseQRankSum=0.823;DP=51;MQRankSum=0.218;QUALapprox=659;RAW_GT_COUNT=0,0,1;RAW_MQandDP=91279,51;ReadPosRankSum=0.631;VarDP=51 GT:AD:DP:GQ:PL:SB 1:18,33,0:51:99:659,0,1469:4,14,6,27 +chrX 1173854 . A . . END=1173857 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,1628 +chrX 1173858 . G C, 604.04 . AS_QUALapprox=|614|0;AS_VarDP=18|32|0;BaseQRankSum=1.706;DP=50;MQRankSum=0.152;QUALapprox=614;RAW_GT_COUNT=0,0,1;RAW_MQandDP=89343,50;ReadPosRankSum=1.316;VarDP=50 GT:AD:DP:GQ:PL:SB 1:18,32,0:50:99:614,0,1424:4,14,6,26 +chrX 1173859 . A . . END=1174138 GT:DP:GQ:MIN_DP:PL 0:11:35:1:0,35 +chrX 1174139 . G . . END=1174574 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1174575 . T . . END=1174684 GT:DP:GQ:MIN_DP:PL 0:5:35:1:0,35 +chrX 1174685 . G T, 62.04 . AS_QUALapprox=|72|0;AS_VarDP=9|12|0;BaseQRankSum=0.000;DP=23;MQRankSum=1.065;QUALapprox=72;RAW_GT_COUNT=0,0,1;RAW_MQandDP=24832,23;ReadPosRankSum=0.889;VarDP=21 GT:AD:DP:GQ:PL:SB 1:9,12,0:21:72:72,0,405:9,0,12,0 +chrX 1174686 . A . . END=1175512 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,423 +chrX 1175513 . G A, 1702.04 . AS_QUALapprox=|1712|0;AS_VarDP=0|53|0;DP=56;QUALapprox=1712;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=53 GT:AD:DP:GQ:PL:SB 1:0,53,0:53:99:1712,0,1712:0,0,20,33 +chrX 1175514 . T . . END=1175581 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1399 +chrX 1175582 . CT C, 1384.01 . AS_QUALapprox=|1394|0;AS_VarDP=0|45|0;DP=48;QUALapprox=1394;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=45 GT:AD:DP:GQ:PL:SB 1:0,45,0:45:99:1394,0,1394:0,0,23,22 +chrX 1175584 . T . . END=1175800 GT:DP:GQ:MIN_DP:PL 0:47:99:47:0,188 +chrX 1175801 . T . . END=1175803 GT:DP:GQ:MIN_DP:PL 0:38:0:38:0,0 +chrX 1175804 . T . . END=1175839 GT:DP:GQ:MIN_DP:PL 0:37:99:37:0,225 +chrX 1175840 . T . . END=1175842 GT:DP:GQ:MIN_DP:PL 0:33:0:33:0,0 +chrX 1175843 . T . . END=1175908 GT:DP:GQ:MIN_DP:PL 0:45:99:45:0,261 +chrX 1175909 . T . . END=1175909 GT:DP:GQ:MIN_DP:PL 0:54:0:54:0,0 +chrX 1175910 . T . . END=1175942 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,566 +chrX 1175943 . A . . END=1175943 GT:DP:GQ:MIN_DP:PL 0:57:0:57:0,0 +chrX 1175944 . T . . END=1176012 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,738 +chrX 1176013 . G . . END=1176013 GT:DP:GQ:MIN_DP:PL 0:38:0:38:0,0 +chrX 1176014 . T . . END=1176016 GT:DP:GQ:MIN_DP:PL 0:39:99:39:0,1181 +chrX 1176017 . T . . END=1176017 GT:DP:GQ:MIN_DP:PL 0:33:0:33:0,0 +chrX 1176018 . A . . END=1176206 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,987 +chrX 1176207 . ATATAT A, 2115.01 . AS_QUALapprox=|2125|0;AS_VarDP=1|48|0;BaseQRankSum=-0.229;DP=56;MQRankSum=0.000;QUALapprox=2125;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;ReadPosRankSum=1.660;VarDP=49 GT:AD:DP:GQ:PL:SB 1:1,48,0:49:99:2125,0,2129:0,1,24,24 +chrX 1176213 . T . . END=1176242 GT:DP:GQ:MIN_DP:PL 0:44:99:44:0,989 +chrX 1176243 . T TTTA, 1872.01 . AS_QUALapprox=|1882|0;AS_VarDP=0|42|0;DP=43;QUALapprox=1882;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154800,43;VarDP=42 GT:AD:DP:GQ:PL:SB 1:0,42,0:42:99:1882,0,1882:0,0,23,19 +chrX 1176244 . T . . END=1176266 GT:DP:GQ:MIN_DP:PL 0:44:99:44:0,1239 +chrX 1176267 . A T, 380.04 . AS_QUALapprox=|390|0;AS_VarDP=17|26|0;BaseQRankSum=-1.261;DP=44;MQRankSum=0.000;QUALapprox=390;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158281,44;ReadPosRankSum=0.622;VarDP=43 GT:AD:DP:GQ:PL:SB 1:17,26,0:43:99:390,0,1145:9,8,11,15 +chrX 1176268 . A . . END=1176271 GT:DP:GQ:MIN_DP:PL 0:42:99:42:0,1339 +chrX 1176272 . A G, 347.04 . AS_QUALapprox=|357|0;AS_VarDP=17|25|0;BaseQRankSum=-1.900;DP=43;MQRankSum=0.000;QUALapprox=357;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154681,43;ReadPosRankSum=0.388;VarDP=42 GT:AD:DP:GQ:PL:SB 1:17,25,0:42:99:357,0,1112:9,8,11,14 +chrX 1176273 . A . . END=1176273 GT:DP:GQ:MIN_DP:PL 0:41:99:41:0,1306 +chrX 1176274 . T A, 382.04 . AS_QUALapprox=|392|0;AS_VarDP=16|25|0;BaseQRankSum=1.580;DP=43;MQRankSum=0.000;QUALapprox=392;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154681,43;ReadPosRankSum=0.160;VarDP=41 GT:AD:DP:GQ:PL:SB 1:16,25,0:41:99:392,0,1112:9,7,11,14 +chrX 1176275 . A . . END=1176287 GT:DP:GQ:MIN_DP:PL 0:41:99:41:0,1245 +chrX 1176288 . T TATA,TATAAGAAAATAATAAAATATTATA, 1149.01 . AS_QUALapprox=|1159|944|0;AS_VarDP=0|21|13|0;DP=48;QUALapprox=1159;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172681,48;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,21,13,0:34:99:1159,0,215,1047:0,0,16,18 +chrX 1176289 . A . . END=1176328 GT:DP:GQ:MIN_DP:PL 0:43:99:43:0,1142 +chrX 1176329 . A ATATTATAAAATAATAATAATATATTAT,ATATTATAAAATAATAATAATATATTATTATTATAAAATAATAATAATATATTAT, 1307.01 . AS_QUALapprox=|982|1317|0;AS_VarDP=0|3|12|0;DP=64;QUALapprox=1317;RAW_GT_COUNT=0,0,1;RAW_MQandDP=225191,64;VarDP=15 GT:AD:DP:GQ:PL:SB 2:0,3,12,0:15:99:1317,335,0,896:0,0,9,6 +chrX 1176330 . T . . END=1176928 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,199 +chrX 1176929 . C T, 54.04 . AS_QUALapprox=|64|0;AS_VarDP=32|33|0;BaseQRankSum=0.953;DP=66;MQRankSum=-2.000;QUALapprox=64;RAW_GT_COUNT=0,0,1;RAW_MQandDP=232295,66;ReadPosRankSum=-0.210;VarDP=65 GT:AD:DP:GQ:PL:SB 1:32,33,0:65:64:64,0,1086:14,18,19,14 +chrX 1176930 . G . . END=1176964 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,254 +chrX 1176965 . A G, 2226.04 . AS_QUALapprox=|2236|0;AS_VarDP=0|67|0;DP=73;QUALapprox=2236;RAW_GT_COUNT=0,0,1;RAW_MQandDP=256920,73;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,67,0:67:99:2236,0,2236:0,0,36,31 +chrX 1176966 . T . . END=1177508 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1627 +chrX 1177509 . AT A, 170.01 . AS_QUALapprox=|180|0;AS_VarDP=30|34|0;BaseQRankSum=-0.123;DP=66;MQRankSum=0.000;QUALapprox=180;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;ReadPosRankSum=1.783;VarDP=64 GT:AD:DP:GQ:PL:SB 1:30,34,0:64:99:180,0,1469:10,20,17,17 +chrX 1177511 . T . . END=1177536 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1800 +chrX 1177537 . TATA T, 313.01 . AS_QUALapprox=|323|0;AS_VarDP=27|34|0;BaseQRankSum=-1.635;DP=61;MQRankSum=0.000;QUALapprox=323;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;ReadPosRankSum=0.589;VarDP=61 GT:AD:DP:GQ:PL:SB 1:27,34,0:61:99:323,0,1520:12,15,18,16 +chrX 1177541 . A . . END=1177596 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,313 +chrX 1177597 . C T, 228.04 . AS_QUALapprox=|238|0;AS_VarDP=18|33|0;BaseQRankSum=0.638;DP=51;MQRankSum=0.000;QUALapprox=238;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;ReadPosRankSum=-1.203;VarDP=51 GT:AD:DP:GQ:PL:SB 1:18,33,0:51:99:238,0,1047:10,8,18,15 +chrX 1177598 . T . . END=1177711 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1193 +chrX 1177712 . G A, 2001.04 . AS_QUALapprox=|2011|0;AS_VarDP=0|59|0;DP=61;QUALapprox=2011;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:2011,0,2011:0,0,29,30 +chrX 1177713 . T . . END=1177797 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,342 +chrX 1177798 . G A, 560.04 . AS_QUALapprox=|1076|0;AS_VarDP=0|34|0;DP=57;QUALapprox=1076;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1076,0,1303:0,0,15,19 +chrX 1177799 . T . . END=1178156 GT:DP:GQ:MIN_DP:PL 0:41:20:40:0,20 +chrX 1178157 . A . . END=1178157 GT:DP:GQ:MIN_DP:PL 0:40:0:40:0,0 +chrX 1178158 . A T, 628.04 . AS_QUALapprox=|1600|0;AS_VarDP=0|41|0;DP=41;QUALapprox=1600;RAW_GT_COUNT=0,0,1;RAW_MQandDP=124758,41;VarDP=41 GT:AD:DP:GQ:PL:SB 1:0,41,0:41:99:1600,0,1111:0,0,7,8 +chrX 1178159 . A . . END=1178162 GT:DP:GQ:MIN_DP:PL 0:41:20:41:0,20 +chrX 1178163 . T . . END=1178181 GT:DP:GQ:MIN_DP:PL 0:41:0:41:0,0 +chrX 1178182 . TATAAA T, 637.04 . AS_QUALapprox=|1600|0;AS_VarDP=0|41|0;DP=41;QUALapprox=1600;RAW_GT_COUNT=0,0,1;RAW_MQandDP=124758,41;VarDP=41 GT:AD:DP:GQ:PL:SB 1:0,41,0:41:99:1600,0,1111:0,0,7,8 +chrX 1178188 . A . . END=1178193 GT:DP:GQ:MIN_DP:PL 0:41:99:41:0,710 +chrX 1178194 . TTATATTATATTATTGTATATGA T, 856.01 . AS_QUALapprox=|866|0;AS_VarDP=0|25|0;DP=52;QUALapprox=866;RAW_GT_COUNT=0,0,1;RAW_MQandDP=160435,52;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:866,0,1194:0,0,7,8 +chrX 1178217 . T . . END=1178476 GT:DP:GQ:MIN_DP:PL 0:39:56:34:0,56 +chrX 1178477 . A ATATATAATTATATATTATAATTATATTATATTATTT,ATATATAATTATATATTATAATTATATTATATTATTATATATAATTATATATTATAATTATATTATATTATTT, 339.01 . AS_QUALapprox=|31|349|0;AS_VarDP=15|0|5|0;BaseQRankSum=1.687;DP=58;MQRankSum=0.693;QUALapprox=349;RAW_GT_COUNT=0,0,1;RAW_MQandDP=178192,58;ReadPosRankSum=-1.661;VarDP=20 GT:AD:DP:GQ:PL:SB 2:15,0,5,0:20:99:349,318,0,629:8,7,4,1 +chrX 1178478 . T . . END=1179122 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1646 +chrX 1179123 . A AT, 1765.01 . AS_QUALapprox=|1775|0;AS_VarDP=0|63|0;DP=74;QUALapprox=1775;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,63,0:63:99:1775,0,1776:0,0,41,22 +chrX 1179124 . T . . END=1179301 GT:DP:GQ:MIN_DP:PL 0:73:99:73:0,1800 +chrX 1179302 . T C, 1420.04 . AS_QUALapprox=|1430|0;AS_VarDP=13|45|0;BaseQRankSum=1.247;DP=59;MQRankSum=1.445;QUALapprox=1430;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194410,59;ReadPosRankSum=0.979;VarDP=58 GT:AD:DP:GQ:PL:SB 1:13,45,0:58:99:1430,0,1959:6,7,19,26 +chrX 1179303 . C . . END=1179303 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1765 +chrX 1179304 . C T, 1420.04 . AS_QUALapprox=|1430|0;AS_VarDP=13|45|0;BaseQRankSum=1.745;DP=59;MQRankSum=1.445;QUALapprox=1430;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194410,59;ReadPosRankSum=0.922;VarDP=58 GT:AD:DP:GQ:PL:SB 1:13,45,0:58:99:1430,0,1959:6,7,19,26 +chrX 1179305 . A . . END=1179322 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1702 +chrX 1179323 . A AT, 905.01 . AS_QUALapprox=|915|0;AS_VarDP=22|42|0;BaseQRankSum=0.577;DP=67;MQRankSum=0.486;QUALapprox=915;RAW_GT_COUNT=0,0,1;RAW_MQandDP=209699,67;ReadPosRankSum=0.897;VarDP=64 GT:AD:DP:GQ:PL:SB 1:22,42,0:64:99:915,0,1698:12,10,20,22 +chrX 1179324 . T . . END=1179492 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1369 +chrX 1179493 . A AT, 376.01 . AS_QUALapprox=|386|0;AS_VarDP=17|30|0;BaseQRankSum=-1.646;DP=62;MQRankSum=0.526;QUALapprox=386;RAW_GT_COUNT=0,0,1;RAW_MQandDP=189373,62;ReadPosRankSum=-0.765;VarDP=47 GT:AD:DP:GQ:PL:SB 1:17,30,0:47:99:386,0,815:7,10,15,15 +chrX 1179494 . T . . END=1179813 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,328 +chrX 1179814 . A G, 2339.04 . AS_QUALapprox=|2349|0;AS_VarDP=0|71|0;DP=73;QUALapprox=2349;RAW_GT_COUNT=0,0,1;RAW_MQandDP=257641,73;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,71,0:71:99:2349,0,2349:0,0,32,39 +chrX 1179815 . G . . END=1180952 GT:DP:GQ:MIN_DP:PL 0:68:90:68:0,90 +chrX 1180953 . T . . END=1180953 GT:DP:GQ:MIN_DP:PL 0:73:0:73:0,0 +chrX 1180954 . G . . END=1181047 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1800 +chrX 1181048 . G C, 2139.04 . AS_QUALapprox=|2149|0;AS_VarDP=0|69|0;DP=71;QUALapprox=2149;RAW_GT_COUNT=0,0,1;RAW_MQandDP=247106,71;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,69,0:69:99:2149,0,2149:0,0,34,35 +chrX 1181049 . G . . END=1181116 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1800 +chrX 1181117 . G A, 67.04 . AS_QUALapprox=|77|0;AS_VarDP=34|34|0;BaseQRankSum=1.367;DP=71;MQRankSum=-0.848;QUALapprox=77;RAW_GT_COUNT=0,0,1;RAW_MQandDP=243681,71;ReadPosRankSum=0.364;VarDP=68 GT:AD:DP:GQ:PL:SB 1:34,34,0:68:77:77,0,1489:18,16,16,18 +chrX 1181118 . A . . END=1181131 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1800 +chrX 1181132 . C A, 159.04 . AS_QUALapprox=|169|0;AS_VarDP=30|34|0;BaseQRankSum=0.255;DP=68;MQRankSum=-1.200;QUALapprox=169;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234990,68;ReadPosRankSum=-0.127;VarDP=64 GT:AD:DP:GQ:PL:SB 1:30,34,0:64:99:169,0,1488:14,16,19,15 +chrX 1181133 . A . . END=1181344 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1800 +chrX 1181345 . A G, 2178.04 . AS_QUALapprox=|2188|0;AS_VarDP=0|67|0;DP=70;QUALapprox=2188;RAW_GT_COUNT=0,0,1;RAW_MQandDP=250850,70;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,67,0:67:99:2188,0,2188:0,0,33,34 +chrX 1181346 . G . . END=1181511 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1796 +chrX 1181512 . T C, 1746.04 . AS_QUALapprox=|1756|0;AS_VarDP=0|55|0;DP=58;QUALapprox=1756;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:1756,0,1756:0,0,23,32 +chrX 1181513 . G . . END=1181545 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1607 +chrX 1181546 . C T, 114.04 . AS_QUALapprox=|124|0;AS_VarDP=24|26|0;BaseQRankSum=2.193;DP=53;MQRankSum=0.000;QUALapprox=124;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;ReadPosRankSum=0.525;VarDP=50 GT:AD:DP:GQ:PL:SB 1:24,26,0:50:99:124,0,848:12,12,11,15 +chrX 1181547 . G . . END=1181793 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,1475 +chrX 1181794 . G C, 383.04 . AS_QUALapprox=|393|0;AS_VarDP=24|35|0;BaseQRankSum=1.219;DP=63;MQRankSum=-0.794;QUALapprox=393;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226225,63;ReadPosRankSum=-0.178;VarDP=59 GT:AD:DP:GQ:PL:SB 1:24,35,0:59:99:393,0,1137:10,14,14,21 +chrX 1181795 . T . . END=1181906 GT:DP:GQ:MIN_DP:PL 0:58:74:58:0,74 +chrX 1181907 . G A, 1945.04 . AS_QUALapprox=|1955|0;AS_VarDP=0|61|0;DP=66;QUALapprox=1955;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,61,0:61:99:1955,0,1955:0,0,42,19 +chrX 1181908 . A . . END=1181999 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1800 +chrX 1182000 . G . . END=1182000 GT:DP:GQ:MIN_DP:PL 0:66:15:66:0,15 +chrX 1182001 . A . . END=1182192 GT:DP:GQ:MIN_DP:PL 0:87:99:87:0,1785 +chrX 1182193 . AAAAATAAAATAAAAT A,AAAAAT, 708.01 . AS_QUALapprox=|718|538|0;AS_VarDP=0|18|12|0;DP=56;QUALapprox=718;RAW_GT_COUNT=0,0,1;RAW_MQandDP=196405,56;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,18,12,0:30:99:718,0,180,758:0,0,14,16 +chrX 1182209 . A . . END=1182274 GT:DP:GQ:MIN_DP:PL 0:40:99:40:0,1146 +chrX 1182275 . TA T, 1507.01 . AS_QUALapprox=|1517|0;AS_VarDP=2|36|0;BaseQRankSum=0.872;DP=42;MQRankSum=-0.429;QUALapprox=1517;RAW_GT_COUNT=0,0,1;RAW_MQandDP=145006,42;ReadPosRankSum=0.523;VarDP=38 GT:AD:DP:GQ:PL:SB 1:2,36,0:38:99:1517,0,1571:2,0,22,14 +chrX 1182277 . A . . END=1182283 GT:DP:GQ:MIN_DP:PL 0:39:99:39:0,1126 +chrX 1182284 . AATAAAATAAAATAAG A, 224.01 . AS_QUALapprox=|234|0;AS_VarDP=13|18|0;BaseQRankSum=-1.345;DP=40;MQRankSum=-0.195;QUALapprox=234;RAW_GT_COUNT=0,0,1;RAW_MQandDP=138270,40;ReadPosRankSum=1.422;VarDP=31 GT:AD:DP:GQ:PL:SB 1:13,18,0:31:99:234,0,765:9,4,9,9 +chrX 1182300 . A . . END=1182320 GT:DP:GQ:MIN_DP:PL 0:39:99:39:0,982 +chrX 1182321 . TAAATAAAATA T, 1316.01 . AS_QUALapprox=|1326|0;AS_VarDP=2|37|0;BaseQRankSum=0.734;DP=43;MQRankSum=-0.344;QUALapprox=1326;RAW_GT_COUNT=0,0,1;RAW_MQandDP=149645,43;ReadPosRankSum=0.127;VarDP=39 GT:AD:DP:GQ:PL:SB 1:2,37,0:39:99:1326,0,1406:2,0,22,15 +chrX 1182332 . A . . END=1182568 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1167 +chrX 1182569 . C G, 1795.04 . AS_QUALapprox=|1805|0;AS_VarDP=1|56|0;BaseQRankSum=-0.384;DP=61;MQRankSum=0.000;QUALapprox=1805;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;ReadPosRankSum=-0.030;VarDP=57 GT:AD:DP:GQ:PL:SB 1:1,56,0:57:99:1805,0,1840:0,1,24,32 +chrX 1182570 . G . . END=1182843 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,1424 +chrX 1182844 . T C, 1655.04 . AS_QUALapprox=|1665|0;AS_VarDP=0|52|0;DP=55;QUALapprox=1665;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:1665,0,1665:0,0,26,26 +chrX 1182845 . G . . END=1182918 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,1588 +chrX 1182919 . CAAA C,CAAAAA, 802.01 . AS_QUALapprox=|156|812|0;AS_VarDP=0|14|26|0;DP=55;QUALapprox=812;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=40 GT:AD:DP:GQ:PL:SB 2:0,14,26,0:40:99:812,656,0,1044:0,0,19,21 +chrX 1182923 . A . . END=1182990 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1500 +chrX 1182991 . G C, 2399.04 . AS_QUALapprox=|2409|0;AS_VarDP=0|55|0;DP=55;QUALapprox=2409;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:2409,0,2409:0,0,34,21 +chrX 1182992 . C . . END=1183010 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,262 +chrX 1183011 . C T, 659.04 . AS_QUALapprox=|1549|0;AS_VarDP=0|36|0;DP=61;QUALapprox=1549;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219249,61;VarDP=36 GT:AD:DP:GQ:PL:SB 1:0,36,0:36:99:1549,0,1579:0,0,19,17 +chrX 1183012 . G . . END=1183077 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1800 +chrX 1183078 . A G, 1945.04 . AS_QUALapprox=|1955|0;AS_VarDP=0|62|0;DP=64;QUALapprox=1955;RAW_GT_COUNT=0,0,1;RAW_MQandDP=229050,64;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:1955,0,1955:0,0,30,32 +chrX 1183079 . G . . END=1183137 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,155 +chrX 1183138 . C T, 178.04 . AS_QUALapprox=|188|0;AS_VarDP=26|33|0;BaseQRankSum=-0.531;DP=60;MQRankSum=0.170;QUALapprox=188;RAW_GT_COUNT=0,0,1;RAW_MQandDP=214650,60;ReadPosRankSum=1.199;VarDP=59 GT:AD:DP:GQ:PL:SB 1:26,33,0:59:99:188,0,1006:8,18,11,22 +chrX 1183139 . G . . END=1183237 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1687 +chrX 1183238 . C T, 128.04 . AS_QUALapprox=|138|0;AS_VarDP=27|33|0;BaseQRankSum=-2.512;DP=65;MQRankSum=0.000;QUALapprox=138;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;ReadPosRankSum=0.550;VarDP=60 GT:AD:DP:GQ:PL:SB 1:27,33,0:60:99:138,0,1077:10,17,16,17 +chrX 1183239 . C . . END=1183573 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,450 +chrX 1183574 . A G, 454.04 . AS_QUALapprox=|464|0;AS_VarDP=0|14|0;DP=15;QUALapprox=464;RAW_GT_COUNT=0,0,1;RAW_MQandDP=23151,15;VarDP=14 GT:AD:DP:GQ:PL:SB 1:0,14,0:14:99:464,0,464:0,0,0,14 +chrX 1183575 . A . . END=1184527 GT:DP:GQ:MIN_DP:PL 0:5:30:4:0,30 +chrX 1184528 . G A, 2280.04 . AS_QUALapprox=|2290|0;AS_VarDP=0|63|0;DP=64;QUALapprox=2290;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223746,64;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,63,0:63:99:2290,0,2290:0,0,38,25 +chrX 1184529 . A . . END=1184788 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1429 +chrX 1184789 . C CT, 668.01 . AS_QUALapprox=|678|0;AS_VarDP=0|30|0;DP=47;QUALapprox=678;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165121,47;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:678,0,679:0,0,15,15 +chrX 1184790 . T . . END=1185094 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,990 +chrX 1185095 . C CT,CTTTT, 697.01 . AS_QUALapprox=|409|707|0;AS_VarDP=0|5|20|0;DP=54;QUALapprox=707;RAW_GT_COUNT=0,0,1;RAW_MQandDP=146600,54;VarDP=25 GT:AD:DP:GQ:PL:SB 2:0,5,20,0:25:99:707,298,0,570:0,0,16,9 +chrX 1185096 . T . . END=1185136 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,495 +chrX 1185137 . C T, 1633.04 . AS_QUALapprox=|1643|0;AS_VarDP=0|37|0;DP=38;QUALapprox=1643;RAW_GT_COUNT=0,0,1;RAW_MQandDP=125641,38;VarDP=37 GT:AD:DP:GQ:PL:SB 1:0,37,0:37:99:1643,0,1643:0,0,15,22 +chrX 1185138 . A G, 1633.04 . AS_QUALapprox=|1643|0;AS_VarDP=0|37|0;DP=37;QUALapprox=1643;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122041,37;VarDP=37 GT:AD:DP:GQ:PL:SB 1:0,37,0:37:99:1643,0,1643:0,0,15,22 +chrX 1185139 . C . . END=1185633 GT:DP:GQ:MIN_DP:PL 0:61:89:61:0,89 +chrX 1185634 . A G, 1851.04 . AS_QUALapprox=|1861|0;AS_VarDP=0|58|0;DP=60;QUALapprox=1861;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,58,0:58:99:1861,0,1861:0,0,30,28 +chrX 1185635 . A . . END=1186112 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,535 +chrX 1186113 . A T, 2618.04 . AS_QUALapprox=|2628|0;AS_VarDP=0|62|0;DP=63;QUALapprox=2628;RAW_GT_COUNT=0,0,1;RAW_MQandDP=210979,63;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:2628,0,2628:0,0,22,40 +chrX 1186114 . A . . END=1186137 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1800 +chrX 1186138 . T C, 2586.04 . AS_QUALapprox=|2596|0;AS_VarDP=0|60|0;DP=62;QUALapprox=2596;RAW_GT_COUNT=0,0,1;RAW_MQandDP=209494,62;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:2596,0,2596:0,0,21,39 +chrX 1186139 . T . . END=1186588 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1574 +chrX 1186589 . G A, 387.04 . AS_QUALapprox=|397|0;AS_VarDP=21|31|0;BaseQRankSum=2.848;DP=53;MQRankSum=-0.784;QUALapprox=397;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190225,53;ReadPosRankSum=-0.606;VarDP=52 GT:AD:DP:GQ:PL:SB 1:21,31,0:52:99:397,0,1077:13,8,10,21 +chrX 1186590 . G . . END=1186908 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1672 +chrX 1186909 . C T, 149.04 . AS_QUALapprox=|159|0;AS_VarDP=27|31|0;BaseQRankSum=0.069;DP=60;MQRankSum=0.000;QUALapprox=159;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;ReadPosRankSum=-0.694;VarDP=58 GT:AD:DP:GQ:PL:SB 1:27,31,0:58:99:159,0,1018:11,16,6,25 +chrX 1186910 . G . . END=1187390 GT:DP:GQ:MIN_DP:PL 0:56:89:56:0,89 +chrX 1187391 . ATT A,AT, 410.01 . AS_QUALapprox=|150|420|0;AS_VarDP=2|11|20|0;BaseQRankSum=-0.755;DP=51;MQRankSum=-0.127;QUALapprox=420;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183025,51;ReadPosRankSum=-1.698;VarDP=33 GT:AD:DP:GQ:PL:SB 2:2,11,20,0:33:99:420,270,0,482:2,0,15,16 +chrX 1187394 . T . . END=1187537 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,1343 +chrX 1187538 . T C, 1770.04 . AS_QUALapprox=|1780|0;AS_VarDP=0|53|0;DP=56;QUALapprox=1780;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=53 GT:AD:DP:GQ:PL:SB 1:0,53,0:53:99:1780,0,1780:0,0,33,20 +chrX 1187539 . T . . END=1187836 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1514 +chrX 1187837 . C T, 382.04 . AS_QUALapprox=|392|0;AS_VarDP=21|33|0;BaseQRankSum=0.451;DP=57;MQRankSum=0.000;QUALapprox=392;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;ReadPosRankSum=0.364;VarDP=54 GT:AD:DP:GQ:PL:SB 1:21,33,0:54:99:392,0,1001:8,13,13,20 +chrX 1187838 . G . . END=1187939 GT:DP:GQ:MIN_DP:PL 0:53:45:53:0,45 +chrX 1187940 . A . . END=1187940 GT:DP:GQ:MIN_DP:PL 0:51:0:51:0,0 +chrX 1187941 . A . . END=1187948 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,506 +chrX 1187949 . A . . END=1187949 GT:DP:GQ:MIN_DP:PL 0:47:1:47:0,1 +chrX 1187950 . A G,*, 4.72 . AS_QUALapprox=|1466|0|0;AS_VarDP=0|21|21|0;DP=47;QUALapprox=1466;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;VarDP=42 GT:AD:DP:GQ:PL:SB 1:0,21,21,0:42:1:1466,0,1,1031:0,0,26,16 +chrX 1187951 . A . . END=1187951 GT:DP:GQ:MIN_DP:PL 0:45:14:45:0,14 +chrX 1187952 . G . . END=1187956 GT:DP:GQ:MIN_DP:PL 0:46:30:44:0,30 +chrX 1187957 . A AAG, 102.01 . AS_QUALapprox=|1525|0;AS_VarDP=0|46|0;DP=46;QUALapprox=1525;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;VarDP=46 GT:AD:DP:GQ:PL:SB 1:0,46,0:46:99:1525,0,1060:0,0,12,9 +chrX 1187958 . T . . END=1188299 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,189 +chrX 1188300 . C T, 2335.04 . AS_QUALapprox=|2345|0;AS_VarDP=0|69|0;DP=70;QUALapprox=2345;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,69,0:69:99:2345,0,2345:0,0,35,34 +chrX 1188301 . C . . END=1188879 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1311 +chrX 1188880 . C . . END=1188880 GT:DP:GQ:MIN_DP:PL 0:48:0:48:0,0 +chrX 1188881 . A . . END=1189096 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,680 +chrX 1189097 . C . . END=1189099 GT:DP:GQ:MIN_DP:PL 0:49:11:49:0,11 +chrX 1189100 . T . . END=1189129 GT:DP:GQ:MIN_DP:PL 0:40:35:34:0,35 +chrX 1189130 . G . . END=1189130 GT:DP:GQ:MIN_DP:PL 0:33:0:33:0,0 +chrX 1189131 . T . . END=1189137 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,790 +chrX 1189138 . A AGT, 80.01 . AS_QUALapprox=|90|0;AS_VarDP=13|15|0;BaseQRankSum=1.976;DP=30;MQRankSum=-2.214;QUALapprox=90;RAW_GT_COUNT=0,0,1;RAW_MQandDP=96922,30;ReadPosRankSum=-0.738;VarDP=28 GT:AD:DP:GQ:PL:SB 1:13,15,0:28:90:90,0,675:2,11,7,8 +chrX 1189139 . G . . END=1189159 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,669 +chrX 1189160 . G GTA, 260.01 . AS_QUALapprox=|270|0;AS_VarDP=9|15|0;BaseQRankSum=-0.552;DP=26;MQRankSum=-2.309;QUALapprox=270;RAW_GT_COUNT=0,0,1;RAW_MQandDP=79652,26;ReadPosRankSum=-0.119;VarDP=24 GT:AD:DP:GQ:PL:SB 1:9,15,0:24:99:270,0,675:0,9,7,8 +chrX 1189161 . T . . END=1189161 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,780 +chrX 1189162 . G A, 260.04 . AS_QUALapprox=|270|0;AS_VarDP=9|15|0;BaseQRankSum=0.000;DP=26;MQRankSum=-2.309;QUALapprox=270;RAW_GT_COUNT=0,0,1;RAW_MQandDP=79652,26;ReadPosRankSum=0.189;VarDP=24 GT:AD:DP:GQ:PL:SB 1:9,15,0:24:99:270,0,675:0,9,7,8 +chrX 1189163 . T . . END=1189178 GT:DP:GQ:MIN_DP:PL 0:22:99:22:0,616 +chrX 1189179 . GTA G, 305.01 . AS_QUALapprox=|315|0;AS_VarDP=7|14|0;BaseQRankSum=-0.952;DP=23;MQRankSum=-2.368;QUALapprox=315;RAW_GT_COUNT=0,0,1;RAW_MQandDP=66852,23;ReadPosRankSum=0.933;VarDP=21 GT:AD:DP:GQ:PL:SB 1:7,14,0:21:99:315,0,630:0,7,8,6 +chrX 1189182 . T . . END=1189205 GT:DP:GQ:MIN_DP:PL 0:19:99:19:0,217 +chrX 1189206 . A AGTGTGTGTG, 380.01 . AS_QUALapprox=|540|0;AS_VarDP=0|12|0;DP=16;QUALapprox=540;RAW_GT_COUNT=0,0,1;RAW_MQandDP=44730,16;VarDP=12 GT:AD:DP:GQ:PL:SB 1:0,12,0:12:99:540,0,540:0,0,8,4 +chrX 1189207 . TA *,T, 389.04 . AS_QUALapprox=|0|540|0;AS_VarDP=0|4|12|0;DP=16;QUALapprox=540;RAW_GT_COUNT=0,0,1;RAW_MQandDP=44730,16;VarDP=16 GT:AD:DP:GQ:PL:SB 2:0,4,12,0:16:99:540,360,0,540:0,0,8,8 +chrX 1189209 . G . . END=1189230 GT:DP:GQ:MIN_DP:PL 0:15:99:15:0,352 +chrX 1189231 . AG A, 691.01 . AS_QUALapprox=|701|0;AS_VarDP=3|18|0;BaseQRankSum=-0.734;DP=22;MQRankSum=-0.944;QUALapprox=701;RAW_GT_COUNT=0,0,1;RAW_MQandDP=70330,22;ReadPosRankSum=1.111;VarDP=21 GT:AD:DP:GQ:PL:SB 1:3,18,0:21:99:701,0,764:1,2,13,5 +chrX 1189233 . T TATATATATATATA, 691.01 . AS_QUALapprox=|701|0;AS_VarDP=3|18|0;BaseQRankSum=0.425;DP=22;MQRankSum=-0.944;QUALapprox=701;RAW_GT_COUNT=0,0,1;RAW_MQandDP=70330,22;ReadPosRankSum=1.116;VarDP=21 GT:AD:DP:GQ:PL:SB 1:3,18,0:21:99:701,0,764:1,2,13,5 +chrX 1189234 . G . . END=1189257 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,620 +chrX 1189258 . G A, 911.04 . AS_QUALapprox=|921|0;AS_VarDP=3|27|0;BaseQRankSum=2.281;DP=33;MQRankSum=-0.643;QUALapprox=921;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111795,33;ReadPosRankSum=-0.968;VarDP=30 GT:AD:DP:GQ:PL:SB 1:3,27,0:30:99:921,0,985:1,2,17,10 +chrX 1189259 . T . . END=1189463 GT:DP:GQ:MIN_DP:PL 0:41:99:41:0,1022 +chrX 1189464 . G A, 218.04 . AS_QUALapprox=|228|0;AS_VarDP=15|23|0;BaseQRankSum=-0.950;DP=40;MQRankSum=0.000;QUALapprox=228;RAW_GT_COUNT=0,0,1;RAW_MQandDP=144000,40;ReadPosRankSum=0.209;VarDP=38 GT:AD:DP:GQ:PL:SB 1:15,23,0:38:99:228,0,719:10,5,9,14 +chrX 1189465 . A . . END=1189531 GT:DP:GQ:MIN_DP:PL 0:38:99:38:0,948 +chrX 1189532 . A G, 988.04 . AS_QUALapprox=|998|0;AS_VarDP=1|31|0;BaseQRankSum=2.299;DP=38;MQRankSum=0.000;QUALapprox=998;RAW_GT_COUNT=0,0,1;RAW_MQandDP=134800,38;ReadPosRankSum=-1.517;VarDP=32 GT:AD:DP:GQ:PL:SB 1:1,31,0:32:99:998,0,1007:0,1,18,13 +chrX 1189533 . A . . END=1189698 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,855 +chrX 1189699 . C A, 70.04 . AS_QUALapprox=|80|0;AS_VarDP=28|30|0;BaseQRankSum=-0.496;DP=60;MQRankSum=-1.354;QUALapprox=80;RAW_GT_COUNT=0,0,1;RAW_MQandDP=213589,60;ReadPosRankSum=0.272;VarDP=58 GT:AD:DP:GQ:PL:SB 1:28,30,0:58:80:80,0,922:17,11,15,15 +chrX 1189700 . G . . END=1189980 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1607 +chrX 1189981 . A C, 27.04 . AS_QUALapprox=|37|0;AS_VarDP=27|27|0;BaseQRankSum=0.814;DP=55;MQRankSum=0.000;QUALapprox=37;RAW_GT_COUNT=0,0,1;RAW_MQandDP=193851,55;ReadPosRankSum=-0.312;VarDP=54 GT:AD:DP:GQ:PL:SB 1:27,27,0:54:37:37,0,909:17,10,13,14 +chrX 1189982 . C . . END=1190057 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1567 +chrX 1190058 . G A, 191.04 . AS_QUALapprox=|201|0;AS_VarDP=26|30|0;BaseQRankSum=1.103;DP=59;MQRankSum=0.245;QUALapprox=201;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205079,59;ReadPosRankSum=-1.422;VarDP=56 GT:AD:DP:GQ:PL:SB 1:26,30,0:56:99:201,0,989:14,12,16,14 +chrX 1190059 . G . . END=1190059 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,1757 +chrX 1190060 . T C, 2137.04 . AS_QUALapprox=|2147|0;AS_VarDP=0|55|0;DP=58;QUALapprox=2147;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201479,58;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:2147,0,2147:0,0,29,26 +chrX 1190061 . G . . END=1190596 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,319 +chrX 1190597 . C T, 454.04 . AS_QUALapprox=|464|0;AS_VarDP=27|35|0;BaseQRankSum=3.012;DP=63;MQRankSum=0.000;QUALapprox=464;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;ReadPosRankSum=1.485;VarDP=62 GT:AD:DP:GQ:PL:SB 1:27,35,0:62:99:464,0,1207:14,13,17,18 +chrX 1190598 . G . . END=1191044 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,164 +chrX 1191045 . G A, 286.04 . AS_QUALapprox=|296|0;AS_VarDP=23|31|0;BaseQRankSum=1.219;DP=59;MQRankSum=0.000;QUALapprox=296;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;ReadPosRankSum=-2.189;VarDP=54 GT:AD:DP:GQ:PL:SB 1:23,31,0:54:99:296,0,1031:11,12,17,14 +chrX 1191046 . A . . END=1191088 GT:DP:GQ:MIN_DP:PL 0:49:31:49:0,31 +chrX 1191089 . G A, 5.04 . AS_QUALapprox=|15|0;AS_VarDP=26|27|0;BaseQRankSum=-0.794;DP=54;MQRankSum=0.000;QUALapprox=15;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;ReadPosRankSum=-1.443;VarDP=53 GT:AD:DP:GQ:PL:SB 1:26,27,0:53:15:15,0,896:16,10,14,13 +chrX 1191090 . G . . END=1191294 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1597 +chrX 1191295 . C CTCTTTCTT,CTCTTTCTTTCCTTCTT, 239.01 . AS_QUALapprox=|0|249|0;AS_VarDP=10|0|24|0;BaseQRankSum=0.150;DP=54;MQRankSum=2.730;QUALapprox=249;RAW_GT_COUNT=0,0,1;RAW_MQandDP=184702,54;ReadPosRankSum=-0.567;VarDP=34 GT:AD:DP:GQ:PL:SB 2:10,0,24,0:34:99:249,613,0,802:2,8,7,17 +chrX 1191296 . T . . END=1191360 GT:DP:GQ:MIN_DP:PL 0:40:99:40:0,540 +chrX 1191361 . C . . END=1191361 GT:DP:GQ:MIN_DP:PL 0:32:10:32:0,10 +chrX 1191362 . C . . END=1191655 GT:DP:GQ:MIN_DP:PL 0:38:48:28:0,48 +chrX 1191656 . T C, 1769.04 . AS_QUALapprox=|1779|0;AS_VarDP=0|57|0;DP=59;QUALapprox=1779;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:1779,0,1779:0,0,37,20 +chrX 1191657 . G . . END=1191802 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,1329 +chrX 1191803 . C T, 2018.04 . AS_QUALapprox=|2028|0;AS_VarDP=0|51|0;DP=53;QUALapprox=2028;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190225,53;VarDP=51 GT:AD:DP:GQ:PL:SB 1:0,51,0:51:99:2028,0,2028:0,0,24,27 +chrX 1191804 . C . . END=1191809 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,1533 +chrX 1191810 . T C, 361.04 . AS_QUALapprox=|371|0;AS_VarDP=18|30|0;BaseQRankSum=-0.539;DP=49;MQRankSum=-0.732;QUALapprox=371;RAW_GT_COUNT=0,0,1;RAW_MQandDP=175825,49;ReadPosRankSum=-0.107;VarDP=48 GT:AD:DP:GQ:PL:SB 1:18,30,0:48:99:371,0,977:9,9,13,17 +chrX 1191811 . G . . END=1191971 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,218 +chrX 1191972 . A G, 2359.04 . AS_QUALapprox=|2369|0;AS_VarDP=0|53|0;DP=55;QUALapprox=2369;RAW_GT_COUNT=0,0,1;RAW_MQandDP=167329,55;VarDP=53 GT:AD:DP:GQ:PL:SB 1:0,53,0:53:99:2369,0,2369:0,0,22,31 +chrX 1191973 . A . . END=1191973 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1728 +chrX 1191974 . G A, 2325.04 . AS_QUALapprox=|2335|0;AS_VarDP=0|52|0;DP=52;QUALapprox=2335;RAW_GT_COUNT=0,0,1;RAW_MQandDP=156529,52;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:2335,0,2335:0,0,22,30 +chrX 1191975 . G . . END=1191975 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,1643 +chrX 1191976 . T C, 2415.04 . AS_QUALapprox=|2425|0;AS_VarDP=0|54|0;DP=54;QUALapprox=2425;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162579,54;VarDP=54 GT:AD:DP:GQ:PL:SB 1:0,54,0:54:99:2425,0,2425:0,0,24,30 +chrX 1191977 . G . . END=1191979 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,1508 +chrX 1191980 . T C, 2195.04 . AS_QUALapprox=|2205|0;AS_VarDP=0|49|0;DP=49;QUALapprox=2205;RAW_GT_COUNT=0,0,1;RAW_MQandDP=144579,49;VarDP=49 GT:AD:DP:GQ:PL:SB 1:0,49,0:49:99:2205,0,2205:0,0,24,25 +chrX 1191981 . G . . END=1191986 GT:DP:GQ:MIN_DP:PL 0:46:99:46:0,1479 +chrX 1191987 . T C, 2105.04 . AS_QUALapprox=|2115|0;AS_VarDP=0|47|0;DP=47;QUALapprox=2115;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136379,47;VarDP=47 GT:AD:DP:GQ:PL:SB 1:0,47,0:47:99:2115,0,2115:0,0,25,22 +chrX 1191988 . G A, 2140.04 . AS_QUALapprox=|2150|0;AS_VarDP=0|48|0;DP=48;QUALapprox=2150;RAW_GT_COUNT=0,0,1;RAW_MQandDP=138228,48;VarDP=48 GT:AD:DP:GQ:PL:SB 1:0,48,0:48:99:2150,0,2150:0,0,26,22 +chrX 1191989 . A . . END=1191992 GT:DP:GQ:MIN_DP:PL 0:47:99:47:0,1488 +chrX 1191993 . G C, 2095.04 . AS_QUALapprox=|2105|0;AS_VarDP=0|47|0;DP=48;QUALapprox=2105;RAW_GT_COUNT=0,0,1;RAW_MQandDP=138228,48;VarDP=47 GT:AD:DP:GQ:PL:SB 1:0,47,0:47:99:2105,0,2105:0,0,25,22 +chrX 1191994 . A . . END=1192020 GT:DP:GQ:MIN_DP:PL 0:46:99:46:0,1424 +chrX 1192021 . T C, 1394.04 . AS_QUALapprox=|1404|0;AS_VarDP=0|44|0;DP=46;QUALapprox=1404;RAW_GT_COUNT=0,0,1;RAW_MQandDP=132556,46;VarDP=44 GT:AD:DP:GQ:PL:SB 1:0,44,0:44:99:1404,0,1404:0,0,25,19 +chrX 1192022 . G . . END=1192096 GT:DP:GQ:MIN_DP:PL 0:39:45:36:0,45 +chrX 1192097 . T C, 87.04 . AS_QUALapprox=|97|0;AS_VarDP=16|19|0;BaseQRankSum=-0.066;DP=38;MQRankSum=-2.031;QUALapprox=97;RAW_GT_COUNT=0,0,1;RAW_MQandDP=99618,38;ReadPosRankSum=1.127;VarDP=35 GT:AD:DP:GQ:PL:SB 1:16,19,0:35:97:97,0,610:9,7,10,9 +chrX 1192098 . G . . END=1192219 GT:DP:GQ:MIN_DP:PL 0:38:99:38:0,585 +chrX 1192220 . A . . END=1192220 GT:DP:GQ:MIN_DP:PL 0:40:0:40:0,0 +chrX 1192221 . C A,CA, 1075.01 . AS_QUALapprox=|875|1085|0;AS_VarDP=0|15|18|0;DP=45;QUALapprox=1085;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147425,45;VarDP=33 GT:AD:DP:GQ:PL:SB 2:0,15,18,0:33:99:1085,210,0,823:0,0,17,16 +chrX 1192222 . A . . END=1192764 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,406 +chrX 1192765 . T TTTCCTTCCTTCC, 305.01 . AS_QUALapprox=|315|0;AS_VarDP=13|21|0;BaseQRankSum=-0.480;DP=45;MQRankSum=-1.368;QUALapprox=315;RAW_GT_COUNT=0,0,1;RAW_MQandDP=153676,45;ReadPosRankSum=-0.532;VarDP=34 GT:AD:DP:GQ:PL:SB 1:13,21,0:34:99:315,0,882:5,8,8,13 +chrX 1192766 . T . . END=1193321 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1018 +chrX 1193322 . C T, 2080.04 . AS_QUALapprox=|2090|0;AS_VarDP=0|63|0;DP=63;QUALapprox=2090;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,63,0:63:99:2090,0,2090:0,0,39,24 +chrX 1193323 . G . . END=1193649 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1800 +chrX 1193650 . T C, 1776.04 . AS_QUALapprox=|1786|0;AS_VarDP=0|57|0;DP=58;QUALapprox=1786;RAW_GT_COUNT=0,0,1;RAW_MQandDP=197400,58;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:1786,0,1786:0,0,30,27 +chrX 1193651 . G . . END=1193780 GT:DP:GQ:MIN_DP:PL 0:43:99:43:0,813 +chrX 1193781 . CAA C, 578.01 . AS_QUALapprox=|588|0;AS_VarDP=2|21|0;BaseQRankSum=-0.354;DP=40;MQRankSum=-0.335;QUALapprox=588;RAW_GT_COUNT=0,0,1;RAW_MQandDP=135546,40;ReadPosRankSum=-1.578;VarDP=23 GT:AD:DP:GQ:PL:SB 1:2,21,0:23:99:588,0,627:1,1,12,9 +chrX 1193784 . A . . END=1193954 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1046 +chrX 1193955 . C G, 130.04 . AS_QUALapprox=|140|0;AS_VarDP=19|26|0;BaseQRankSum=-2.097;DP=47;MQRankSum=0.225;QUALapprox=140;RAW_GT_COUNT=0,0,1;RAW_MQandDP=167141,47;ReadPosRankSum=-1.771;VarDP=45 GT:AD:DP:GQ:PL:SB 1:19,26,0:45:99:140,0,791:8,11,15,11 +chrX 1193956 . G . . END=1194052 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1146 +chrX 1194053 . G A, 642.04 . AS_QUALapprox=|652|0;AS_VarDP=23|40|0;BaseQRankSum=1.283;DP=63;MQRankSum=-1.537;QUALapprox=652;RAW_GT_COUNT=0,0,1;RAW_MQandDP=221094,63;ReadPosRankSum=-1.464;VarDP=63 GT:AD:DP:GQ:PL:SB 1:23,40,0:63:99:652,0,1314:12,11,19,21 +chrX 1194054 . G . . END=1194164 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,171 +chrX 1194165 . G . . END=1194165 GT:DP:GQ:MIN_DP:PL 0:62:0:62:0,0 +chrX 1194166 . T . . END=1194225 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1682 +chrX 1194226 . A G, 2700.04 . AS_QUALapprox=|2710|0;AS_VarDP=0|62|0;DP=68;QUALapprox=2710;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241501,68;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:2710,0,2750:0,0,28,34 +chrX 1194227 . C . . END=1194238 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1716 +chrX 1194239 . A G, 2761.04 . AS_QUALapprox=|2771|0;AS_VarDP=0|62|0;DP=68;QUALapprox=2771;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241501,68;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:2771,0,2781:0,0,26,36 +chrX 1194240 . A . . END=1194250 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1670 +chrX 1194251 . G C, 2650.04 . AS_QUALapprox=|2660|0;AS_VarDP=0|61|0;DP=67;QUALapprox=2660;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237901,67;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,61,0:61:99:2660,0,2703:0,0,25,36 +chrX 1194252 . T . . END=1194330 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1220 +chrX 1194331 . A G, 1839.04 . AS_QUALapprox=|1849|0;AS_VarDP=1|44|0;BaseQRankSum=-0.283;DP=51;MQRankSum=0.000;QUALapprox=1849;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183025,51;ReadPosRankSum=-1.580;VarDP=45 GT:AD:DP:GQ:PL:SB 1:1,44,0:45:99:1849,0,1937:0,1,19,25 +chrX 1194332 . G . . END=1194350 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,1315 +chrX 1194351 . G A, 2003.04 . AS_QUALapprox=|2013|0;AS_VarDP=1|48|0;BaseQRankSum=-0.172;DP=56;MQRankSum=0.000;QUALapprox=2013;RAW_GT_COUNT=0,0,1;RAW_MQandDP=200116,56;ReadPosRankSum=-0.289;VarDP=49 GT:AD:DP:GQ:PL:SB 1:1,48,0:49:99:2013,0,2128:0,1,17,31 +chrX 1194352 . C . . END=1194439 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1330 +chrX 1194440 . T C, 2206.04 . AS_QUALapprox=|2216|0;AS_VarDP=0|61|0;DP=64;QUALapprox=2216;RAW_GT_COUNT=0,0,1;RAW_MQandDP=225203,64;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,61,0:61:99:2216,0,2216:0,0,25,36 +chrX 1194441 . G . . END=1194463 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,214 +chrX 1194464 . A G, 1836.04 . AS_QUALapprox=|1846|0;AS_VarDP=0|57|0;DP=61;QUALapprox=1846;RAW_GT_COUNT=0,0,1;RAW_MQandDP=217274,61;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:1846,0,1846:0,0,26,31 +chrX 1194465 . A . . END=1194527 GT:DP:GQ:MIN_DP:PL 0:56:55:56:0,55 +chrX 1194528 . A G, 1997.04 . AS_QUALapprox=|2007|0;AS_VarDP=0|63|0;DP=64;QUALapprox=2007;RAW_GT_COUNT=0,0,1;RAW_MQandDP=229825,64;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,63,0:63:99:2007,0,2007:0,0,32,31 +chrX 1194529 . G . . END=1194743 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,283 +chrX 1194744 . A G, 2392.04 . AS_QUALapprox=|2402|0;AS_VarDP=0|76|0;DP=79;QUALapprox=2402;RAW_GT_COUNT=0,0,1;RAW_MQandDP=284400,79;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,76,0:76:99:2402,0,2402:0,0,42,34 +chrX 1194745 . A . . END=1195408 GT:DP:GQ:MIN_DP:PL 0:57:70:57:0,70 +chrX 1195409 . T C, 296.04 . AS_QUALapprox=|306|0;AS_VarDP=24|33|0;BaseQRankSum=0.347;DP=59;MQRankSum=-0.817;QUALapprox=306;RAW_GT_COUNT=0,0,1;RAW_MQandDP=211825,59;ReadPosRankSum=-0.517;VarDP=57 GT:AD:DP:GQ:PL:SB 1:24,33,0:57:99:306,0,1121:12,12,17,16 +chrX 1195410 . T . . END=1195453 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1800 +chrX 1195454 . G C, 2300.04 . AS_QUALapprox=|2310|0;AS_VarDP=0|72|0;DP=73;QUALapprox=2310;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262225,73;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,72,0:72:99:2310,0,2310:0,0,33,39 +chrX 1195455 . T . . END=1195634 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1742 +chrX 1195635 . T A, 1983.04 . AS_QUALapprox=|1993|0;AS_VarDP=0|62|0;DP=62;QUALapprox=1993;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:1993,0,1993:0,0,35,27 +chrX 1195636 . G . . END=1195720 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1800 +chrX 1195721 . G C, 119.04 . AS_QUALapprox=|129|0;AS_VarDP=28|30|0;BaseQRankSum=1.363;DP=61;MQRankSum=0.000;QUALapprox=129;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;ReadPosRankSum=-1.401;VarDP=58 GT:AD:DP:GQ:PL:SB 1:28,30,0:58:99:129,0,1022:13,15,18,12 +chrX 1195722 . T . . END=1195816 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1800 +chrX 1195817 . A . . END=1195817 GT:DP:GQ:MIN_DP:PL 0:67:1:67:0,1 +chrX 1195818 . T . . END=1195902 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1530 +chrX 1195903 . G A, 78.04 . AS_QUALapprox=|88|0;AS_VarDP=31|35|0;BaseQRankSum=-0.130;DP=70;MQRankSum=0.000;QUALapprox=88;RAW_GT_COUNT=0,0,1;RAW_MQandDP=249921,70;ReadPosRankSum=-0.919;VarDP=66 GT:AD:DP:GQ:PL:SB 1:31,35,0:66:88:88,0,1024:18,13,18,17 +chrX 1195904 . T . . END=1196035 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1755 +chrX 1196036 . A G, 1983.04 . AS_QUALapprox=|1993|0;AS_VarDP=0|61|0;DP=65;QUALapprox=1993;RAW_GT_COUNT=0,0,1;RAW_MQandDP=228948,65;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,61,0:61:99:1993,0,1993:0,0,38,23 +chrX 1196037 . C . . END=1196077 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1616 +chrX 1196078 . T G, 497.04 . AS_QUALapprox=|507|0;AS_VarDP=23|35|0;BaseQRankSum=-1.069;DP=63;MQRankSum=-0.534;QUALapprox=507;RAW_GT_COUNT=0,0,1;RAW_MQandDP=214587,63;ReadPosRankSum=-0.336;VarDP=58 GT:AD:DP:GQ:PL:SB 1:23,35,0:58:99:507,0,1521:12,11,25,10 +chrX 1196079 . T C, 497.04 . AS_QUALapprox=|507|0;AS_VarDP=23|35|0;BaseQRankSum=-1.178;DP=65;MQRankSum=-0.534;QUALapprox=507;RAW_GT_COUNT=0,0,1;RAW_MQandDP=221787,65;ReadPosRankSum=0.080;VarDP=58 GT:AD:DP:GQ:PL:SB 1:23,35,0:58:99:507,0,1521:12,11,25,10 +chrX 1196080 . C . . END=1196186 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1443 +chrX 1196187 . AT A, 643.01 . AS_QUALapprox=|653|0;AS_VarDP=5|34|0;BaseQRankSum=-0.483;DP=49;MQRankSum=1.649;QUALapprox=653;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172400,49;ReadPosRankSum=-0.595;VarDP=39 GT:AD:DP:GQ:PL:SB 1:5,34,0:39:99:653,0,737:5,0,6,28 +chrX 1196189 . T . . END=1196217 GT:DP:GQ:MIN_DP:PL 0:45:99:45:0,1146 +chrX 1196218 . C T, 158.04 . AS_QUALapprox=|168|0;AS_VarDP=21|26|0;BaseQRankSum=-1.060;DP=49;MQRankSum=1.155;QUALapprox=168;RAW_GT_COUNT=0,0,1;RAW_MQandDP=174400,49;ReadPosRankSum=-0.118;VarDP=47 GT:AD:DP:GQ:PL:SB 1:21,26,0:47:99:168,0,872:5,16,12,14 +chrX 1196219 . G . . END=1196541 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,168 +chrX 1196542 . C T, 1608.04 . AS_QUALapprox=|1618|0;AS_VarDP=0|49|0;DP=50;QUALapprox=1618;RAW_GT_COUNT=0,0,1;RAW_MQandDP=177489,50;VarDP=49 GT:AD:DP:GQ:PL:SB 1:0,49,0:49:99:1618,0,1618:0,0,27,22 +chrX 1196543 . G . . END=1196579 GT:DP:GQ:MIN_DP:PL 0:45:99:45:0,1331 +chrX 1196580 . C G, 1479.04 . AS_QUALapprox=|1489|0;AS_VarDP=0|45|0;DP=47;QUALapprox=1489;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;VarDP=45 GT:AD:DP:GQ:PL:SB 1:0,45,0:45:99:1489,0,1489:0,0,20,25 +chrX 1196581 . C . . END=1196616 GT:DP:GQ:MIN_DP:PL 0:45:99:45:0,1370 +chrX 1196617 . A G, 1774.04 . AS_QUALapprox=|1784|0;AS_VarDP=0|57|0;DP=59;QUALapprox=1784;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:1784,0,1784:0,0,26,31 +chrX 1196618 . G . . END=1196649 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1716 +chrX 1196650 . G T, 124.04 . AS_QUALapprox=|134|0;AS_VarDP=27|33|0;BaseQRankSum=-1.562;DP=61;MQRankSum=0.000;QUALapprox=134;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;ReadPosRankSum=-1.999;VarDP=60 GT:AD:DP:GQ:PL:SB 1:27,33,0:60:99:134,0,1041:15,12,13,20 +chrX 1196651 . A . . END=1197092 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1522 +chrX 1197093 . C CTTT, 5.96 . AS_QUALapprox=|16|0;AS_VarDP=15|17|0;BaseQRankSum=-0.249;DP=45;MQRankSum=0.000;QUALapprox=16;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162000,45;ReadPosRankSum=-0.850;VarDP=32 GT:AD:DP:GQ:PL:SB 1:15,17,0:32:16:16,0,669:9,6,12,5 +chrX 1197094 . T . . END=1197113 GT:DP:GQ:MIN_DP:PL 0:40:99:40:0,830 +chrX 1197114 . A G, 20.04 . AS_QUALapprox=|30|0;AS_VarDP=16|18|0;BaseQRankSum=-0.309;DP=34;MQRankSum=0.000;QUALapprox=30;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;ReadPosRankSum=-1.085;VarDP=34 GT:AD:DP:GQ:PL:SB 1:16,18,0:34:30:30,0,727:9,7,12,6 +chrX 1197115 . C . . END=1197216 GT:DP:GQ:MIN_DP:PL 0:45:99:45:0,1101 +chrX 1197217 . C T, 260.04 . AS_QUALapprox=|270|0;AS_VarDP=18|25|0;BaseQRankSum=0.960;DP=43;MQRankSum=1.226;QUALapprox=270;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154225,43;ReadPosRankSum=-0.160;VarDP=43 GT:AD:DP:GQ:PL:SB 1:18,25,0:43:99:270,0,839:10,8,11,14 +chrX 1197218 . G . . END=1199931 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,154 +chrX 1199932 . A ATATATGT, 34.01 . AS_QUALapprox=|44|0;AS_VarDP=28|29|0;BaseQRankSum=0.356;DP=57;MQRankSum=0.000;QUALapprox=44;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;ReadPosRankSum=0.927;VarDP=57 GT:AD:DP:GQ:PL:SB 1:28,29,0:57:44:44,0,1294:18,10,11,18 +chrX 1199933 . A . . END=1199933 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1800 +chrX 1199934 . G T, 32.04 . AS_QUALapprox=|42|0;AS_VarDP=28|29|0;BaseQRankSum=0.861;DP=61;MQRankSum=0.000;QUALapprox=42;RAW_GT_COUNT=0,0,1;RAW_MQandDP=218601,61;ReadPosRankSum=0.942;VarDP=57 GT:AD:DP:GQ:PL:SB 1:28,29,0:57:42:42,0,1294:18,10,11,18 +chrX 1199935 . G . . END=1200798 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,177 +chrX 1200799 . A ATGTGTATATATATGTGTATATAAGCTGTGTATCTATATGTGTGTATATGCG, 491.01 . AS_QUALapprox=|501|0;AS_VarDP=25|36|0;BaseQRankSum=-3.015;DP=70;MQRankSum=-1.911;QUALapprox=501;RAW_GT_COUNT=0,0,1;RAW_MQandDP=243368,70;ReadPosRankSum=-0.561;VarDP=61 GT:AD:DP:GQ:PL:SB 1:25,36,0:61:99:501,0,1620:13,12,13,23 +chrX 1200800 . T . . END=1201015 GT:DP:GQ:MIN_DP:PL 0:57:64:57:0,64 +chrX 1201016 . T C, 2220.04 . AS_QUALapprox=|2230|0;AS_VarDP=0|60|0;DP=61;QUALapprox=2230;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:2230,0,2230:0,0,26,34 +chrX 1201017 . C . . END=1201216 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,154 +chrX 1201217 . G A, 23.04 . AS_QUALapprox=|33|0;AS_VarDP=30|31|0;BaseQRankSum=-1.722;DP=62;MQRankSum=-0.951;QUALapprox=33;RAW_GT_COUNT=0,0,1;RAW_MQandDP=222625,62;ReadPosRankSum=1.361;VarDP=61 GT:AD:DP:GQ:PL:SB 1:30,31,0:61:33:33,0,1322:19,11,19,12 +chrX 1201218 . T . . END=1201241 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1800 +chrX 1201242 . C A, 68.04 . AS_QUALapprox=|78|0;AS_VarDP=29|31|0;BaseQRankSum=0.343;DP=62;MQRankSum=-0.934;QUALapprox=78;RAW_GT_COUNT=0,0,1;RAW_MQandDP=222625,62;ReadPosRankSum=0.560;VarDP=60 GT:AD:DP:GQ:PL:SB 1:29,31,0:60:78:78,0,1312:17,12,17,14 +chrX 1201243 . A . . END=1201276 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,1713 +chrX 1201277 . C T,CCTGTGTGTGT, 87.01 . AS_QUALapprox=|0|97|0;AS_VarDP=21|2|21|0;BaseQRankSum=0.158;DP=55;MQRankSum=-0.910;QUALapprox=97;RAW_GT_COUNT=0,0,1;RAW_MQandDP=197425,55;ReadPosRankSum=-1.893;VarDP=44 GT:AD:DP:GQ:PL:SB 2:21,2,21,0:44:97:97,1113,0,1108:14,7,10,13 +chrX 1201278 . C . . END=1201480 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,104 +chrX 1201481 . TAGAG T, 202.01 . AS_QUALapprox=|212|0;AS_VarDP=22|27|0;BaseQRankSum=-1.260;DP=74;MQRankSum=0.190;QUALapprox=212;RAW_GT_COUNT=0,0,1;RAW_MQandDP=197371,74;ReadPosRankSum=1.176;VarDP=49 GT:AD:DP:GQ:PL:SB 1:22,27,0:49:99:212,0,1193:10,12,14,13 +chrX 1201486 . A . . END=1201525 GT:DP:GQ:MIN_DP:PL 0:46:99:46:0,1170 +chrX 1201526 . G GAGACAGATGATACATAGATAGATGATAGAGAGAT,GAGATAGATGATACATAGATAGATGATAGAGAGAT, 1415.01 . AS_QUALapprox=|1372|1425|0;AS_VarDP=0|20|18|0;DP=58;QUALapprox=1425;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194699,58;VarDP=38 GT:AD:DP:GQ:PL:SB 2:0,20,18,0:38:53:1425,53,0,1185:0,0,19,19 +chrX 1201527 . A . . END=1201648 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1215 +chrX 1201649 . T TTAGA, 314.01 . AS_QUALapprox=|324|0;AS_VarDP=28|36|0;BaseQRankSum=-2.029;DP=70;MQRankSum=0.000;QUALapprox=324;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;ReadPosRankSum=-0.569;VarDP=64 GT:AD:DP:GQ:PL:SB 1:28,36,0:64:99:324,0,1584:16,12,18,18 +chrX 1201650 . T . . END=1201797 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1508 +chrX 1201798 . GGGTA G, 72.01 . AS_QUALapprox=|82|0;AS_VarDP=23|25|0;BaseQRankSum=-1.832;DP=50;MQRankSum=0.000;QUALapprox=82;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;ReadPosRankSum=-0.085;VarDP=48 GT:AD:DP:GQ:PL:SB 1:23,25,0:48:82:82,0,1105:12,11,12,13 +chrX 1201803 . G . . END=1202026 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1578 +chrX 1202027 . G A, 232.04 . AS_QUALapprox=|242|0;AS_VarDP=26|32|0;BaseQRankSum=1.109;DP=62;MQRankSum=0.000;QUALapprox=242;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;ReadPosRankSum=-0.845;VarDP=58 GT:AD:DP:GQ:PL:SB 1:26,32,0:58:99:242,0,1070:11,15,15,17 +chrX 1202028 . G . . END=1202646 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1762 +chrX 1202647 . GT G, 2565.01 . AS_QUALapprox=|2575|0;AS_VarDP=0|64|0;DP=65;QUALapprox=2575;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,64,0:64:99:2575,0,2575:0,0,28,36 +chrX 1202649 . G . . END=1202862 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,139 +chrX 1202863 . C . . END=1202863 GT:DP:GQ:MIN_DP:PL 0:60:0:60:0,0 +chrX 1202864 . T . . END=1203094 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,949 +chrX 1203095 . CAAA C,CAA, 57.01 . AS_QUALapprox=|0|67|0;AS_VarDP=8|5|8|0;BaseQRankSum=-0.211;DP=59;MQRankSum=0.000;QUALapprox=67;RAW_GT_COUNT=0,0,1;RAW_MQandDP=207381,59;ReadPosRankSum=-2.096;VarDP=21 GT:AD:DP:GQ:PL:SB 2:8,5,8,0:21:67:67,419,0,377:1,7,9,4 +chrX 1203099 . A . . END=1203245 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1723 +chrX 1203246 . T C, 1996.04 . AS_QUALapprox=|2006|0;AS_VarDP=0|68|0;DP=72;QUALapprox=2006;RAW_GT_COUNT=0,0,1;RAW_MQandDP=258100,72;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,68,0:68:99:2006,0,2006:0,0,36,32 +chrX 1203247 . G . . END=1203650 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1293 +chrX 1203651 . C T, 682.04 . AS_QUALapprox=|692|0;AS_VarDP=16|32|0;BaseQRankSum=-0.038;DP=51;MQRankSum=-0.327;QUALapprox=692;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158008,51;ReadPosRankSum=0.164;VarDP=48 GT:AD:DP:GQ:PL:SB 1:16,32,0:48:99:692,0,1389:7,9,22,10 +chrX 1203652 . A G, 682.04 . AS_QUALapprox=|692|0;AS_VarDP=16|32|0;BaseQRankSum=-0.488;DP=51;MQRankSum=-0.327;QUALapprox=692;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158008,51;ReadPosRankSum=0.219;VarDP=48 GT:AD:DP:GQ:PL:SB 1:16,32,0:48:99:692,0,1389:7,9,22,10 +chrX 1203653 . C . . END=1203727 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1429 +chrX 1203728 . A C, 447.04 . AS_QUALapprox=|457|0;AS_VarDP=18|32|0;BaseQRankSum=0.251;DP=51;MQRankSum=-0.708;QUALapprox=457;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183249,51;ReadPosRankSum=-0.081;VarDP=50 GT:AD:DP:GQ:PL:SB 1:18,32,0:50:99:457,0,1017:13,5,23,9 +chrX 1203729 . A . . END=1203937 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1552 +chrX 1203938 . C A, 2007.04 . AS_QUALapprox=|2017|0;AS_VarDP=0|62|0;DP=65;QUALapprox=2017;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:2017,0,2017:0,0,34,28 +chrX 1203939 . C . . END=1204073 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1323 +chrX 1204074 . C G, 1618.04 . AS_QUALapprox=|1628|0;AS_VarDP=0|39|0;DP=42;QUALapprox=1628;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147506,42;VarDP=39 GT:AD:DP:GQ:PL:SB 1:0,39,0:39:99:1628,0,1629:0,0,24,15 +chrX 1204075 . A . . END=1204095 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,1037 +chrX 1204096 . A AAAAAAAAAAAG,AAAAAAAAAGAG, 1391.01 . AS_QUALapprox=|1213|1401|0;AS_VarDP=0|17|22|0;DP=45;QUALapprox=1401;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151852,45;VarDP=39 GT:AD:DP:GQ:PL:SB 2:0,17,22,0:39:99:1401,188,0,1068:0,0,22,17 +chrX 1204097 . A . . END=1204149 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,920 +chrX 1204150 . C CTGTGTGTGTGTGTGTG,CTGTGTGTGTGTGTGTGTGTGTGTG, 1650.01 . AS_QUALapprox=|961|1660|0;AS_VarDP=0|8|24|0;DP=54;QUALapprox=1660;RAW_GT_COUNT=0,0,1;RAW_MQandDP=186343,54;VarDP=32 GT:AD:DP:GQ:PL:SB 2:0,8,24,0:32:99:1660,699,0,1362:0,0,17,15 +chrX 1204151 . T . . END=1204793 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1140 +chrX 1204794 . C T, 1796.04 . AS_QUALapprox=|1806|0;AS_VarDP=0|56|0;DP=60;QUALapprox=1806;RAW_GT_COUNT=0,0,1;RAW_MQandDP=214801,60;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,56,0:56:99:1806,0,1806:0,0,30,26 +chrX 1204795 . G . . END=1207500 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,168 +chrX 1207501 . ACCC A,AC, 567.01 . AS_QUALapprox=|480|577|0;AS_VarDP=1|9|12|0;BaseQRankSum=1.550;DP=40;MQRankSum=2.649;QUALapprox=577;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129764,40;ReadPosRankSum=-0.394;VarDP=22 GT:AD:DP:GQ:PL:SB 2:1,9,12,0:22:97:577,97,0,480:1,0,1,20 +chrX 1207505 . C . . END=1207977 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,858 +chrX 1207978 . T A, 2197.04 . AS_QUALapprox=|2207|0;AS_VarDP=1|70|0;BaseQRankSum=-0.435;DP=75;MQRankSum=0.000;QUALapprox=2207;RAW_GT_COUNT=0,0,1;RAW_MQandDP=270000,75;ReadPosRankSum=-0.659;VarDP=71 GT:AD:DP:GQ:PL:SB 1:1,70,0:71:99:2207,0,2242:0,1,35,35 +chrX 1207979 . C . . END=1208052 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1800 +chrX 1208053 . T C, 2257.04 . AS_QUALapprox=|2267|0;AS_VarDP=0|70|0;DP=75;QUALapprox=2267;RAW_GT_COUNT=0,0,1;RAW_MQandDP=270000,75;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,70,0:70:99:2267,0,2267:0,0,45,25 +chrX 1208054 . A . . END=1208507 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1721 +chrX 1208508 . G A, 233.04 . AS_QUALapprox=|243|0;AS_VarDP=24|32|0;BaseQRankSum=-0.139;DP=57;MQRankSum=0.000;QUALapprox=243;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;ReadPosRankSum=0.132;VarDP=56 GT:AD:DP:GQ:PL:SB 1:24,32,0:56:99:243,0,1027:11,13,17,15 +chrX 1208509 . A . . END=1209202 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1524 +chrX 1209203 . A G, 401.04 . AS_QUALapprox=|411|0;AS_VarDP=23|36|0;BaseQRankSum=-0.584;DP=62;MQRankSum=-0.917;QUALapprox=411;RAW_GT_COUNT=0,0,1;RAW_MQandDP=215932,62;ReadPosRankSum=-0.723;VarDP=59 GT:AD:DP:GQ:PL:SB 1:23,36,0:59:99:411,0,1165:6,17,12,24 +chrX 1209204 . T . . END=1209265 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1608 +chrX 1209266 . G A, 302.04 . AS_QUALapprox=|312|0;AS_VarDP=21|31|0;BaseQRankSum=0.076;DP=59;MQRankSum=-0.277;QUALapprox=312;RAW_GT_COUNT=0,0,1;RAW_MQandDP=207707,59;ReadPosRankSum=0.121;VarDP=52 GT:AD:DP:GQ:PL:SB 1:21,31,0:52:99:312,0,977:9,12,13,18 +chrX 1209267 . T . . END=1209382 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,1339 +chrX 1209383 . C G, 27.04 . AS_QUALapprox=|37|0;AS_VarDP=24|26|0;BaseQRankSum=-0.569;DP=52;MQRankSum=-0.543;QUALapprox=37;RAW_GT_COUNT=0,0,1;RAW_MQandDP=181716,52;ReadPosRankSum=0.447;VarDP=50 GT:AD:DP:GQ:PL:SB 1:24,26,0:50:37:37,0,1106:15,9,13,13 +chrX 1209384 . T . . END=1209412 GT:DP:GQ:MIN_DP:PL 0:47:99:47:0,100 +chrX 1209413 . G C, 209.04 . AS_QUALapprox=|219|0;AS_VarDP=23|23|0;BaseQRankSum=0.140;DP=48;MQRankSum=0.000;QUALapprox=219;RAW_GT_COUNT=0,0,1;RAW_MQandDP=168632,48;ReadPosRankSum=-0.857;VarDP=46 GT:AD:DP:GQ:PL:SB 1:23,23,0:46:99:219,0,949:14,9,8,15 +chrX 1209414 . C . . END=1210380 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,109 +chrX 1210381 . C T, 281.04 . AS_QUALapprox=|291|0;AS_VarDP=22|28|0;BaseQRankSum=-0.101;DP=50;MQRankSum=0.173;QUALapprox=291;RAW_GT_COUNT=0,0,1;RAW_MQandDP=178325,50;ReadPosRankSum=1.152;VarDP=50 GT:AD:DP:GQ:PL:SB 1:22,28,0:50:99:291,0,1260:11,11,17,11 +chrX 1210382 . C . . END=1210389 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,1528 +chrX 1210390 . T C, 342.04 . AS_QUALapprox=|352|0;AS_VarDP=22|30|0;BaseQRankSum=-2.017;DP=52;MQRankSum=0.222;QUALapprox=352;RAW_GT_COUNT=0,0,1;RAW_MQandDP=185525,52;ReadPosRankSum=1.195;VarDP=52 GT:AD:DP:GQ:PL:SB 1:22,30,0:52:99:352,0,1319:10,12,18,12 +chrX 1210391 . G . . END=1211994 GT:DP:GQ:MIN_DP:PL 0:33:35:11:0,35 +chrX 1211995 . C A, 992.04 . AS_QUALapprox=|1002|0;AS_VarDP=0|31|0;DP=38;QUALapprox=1002;RAW_GT_COUNT=0,0,1;RAW_MQandDP=134802,38;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1002,0,1311:0,0,14,17 +chrX 1211996 . T . . END=1212251 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,813 +chrX 1212252 . G A, 223.04 . AS_QUALapprox=|233|0;AS_VarDP=25|29|0;BaseQRankSum=3.035;DP=57;MQRankSum=0.000;QUALapprox=233;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;ReadPosRankSum=1.119;VarDP=54 GT:AD:DP:GQ:PL:SB 1:25,29,0:54:99:233,0,1001:10,15,13,16 +chrX 1212253 . A . . END=1212288 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,1361 +chrX 1212289 . C T, 342.04 . AS_QUALapprox=|352|0;AS_VarDP=16|27|0;BaseQRankSum=-0.814;DP=45;MQRankSum=0.000;QUALapprox=352;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162000,45;ReadPosRankSum=-1.622;VarDP=43 GT:AD:DP:GQ:PL:SB 1:16,27,0:43:99:352,0,898:5,11,12,15 +chrX 1212290 . A . . END=1212385 GT:DP:GQ:MIN_DP:PL 0:40:99:40:0,1133 +chrX 1212386 . A G, 166.04 . AS_QUALapprox=|176|0;AS_VarDP=14|20|0;BaseQRankSum=-0.998;DP=35;MQRankSum=0.000;QUALapprox=176;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;ReadPosRankSum=0.508;VarDP=34 GT:AD:DP:GQ:PL:SB 1:14,20,0:34:99:176,0,653:9,5,14,6 +chrX 1212387 . G . . END=1212417 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,943 +chrX 1212418 . G GAA, 139.01 . AS_QUALapprox=|149|0;AS_VarDP=15|23|0;BaseQRankSum=-0.825;DP=53;MQRankSum=0.000;QUALapprox=149;RAW_GT_COUNT=0,0,1;RAW_MQandDP=184800,53;ReadPosRankSum=-1.809;VarDP=38 GT:AD:DP:GQ:PL:SB 1:15,23,0:38:99:149,0,587:7,8,8,15 +chrX 1212419 . A . . END=1212805 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,293 +chrX 1212806 . A AACAC,AACACACAC, 708.01 . AS_QUALapprox=|513|718|0;AS_VarDP=0|9|14|0;DP=41;QUALapprox=718;RAW_GT_COUNT=0,0,1;RAW_MQandDP=145217,41;VarDP=23 GT:AD:DP:GQ:PL:SB 2:0,9,14,0:23:99:718,205,0,665:0,0,4,19 +chrX 1212807 . A . . END=1213155 GT:DP:GQ:MIN_DP:PL 0:3:25:1:0,25 +chrX 1213156 . C . . END=1213156 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1213157 . T . . END=1213194 GT:DP:GQ:MIN_DP:PL 0:2:35:1:0,35 +chrX 1213195 . C . . END=1213195 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 1213196 . C . . END=1213200 GT:DP:GQ:MIN_DP:PL 0:2:45:2:0,45 +chrX 1213201 . C . . END=1213305 GT:DP:GQ:MIN_DP:PL 0:4:0:0:0,0 +chrX 1213306 . T . . END=1213341 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1213342 . A G, 0.87 . AS_QUALapprox=|10|0;AS_VarDP=0|0|0;DP=15;QUALapprox=10;RAW_GT_COUNT=0,0,1;RAW_MQandDP=53764,15;VarDP=1 GT:AD:DP:GQ:PL:SB 1:0,1,0:1:10:10,0,10:0,0,1,0 +chrX 1213343 . C . . END=1213586 GT:DP:GQ:MIN_DP:PL 0:8:30:6:0,30 +chrX 1213587 . T . . END=1213587 GT:DP:GQ:MIN_DP:PL 0:9:0:9:0,0 +chrX 1213588 . T . . END=1215975 GT:DP:GQ:MIN_DP:PL 0:7:35:5:0,35 +chrX 1215976 . C A, 216.04 . AS_QUALapprox=|226|0;AS_VarDP=26|32|0;BaseQRankSum=1.285;DP=63;MQRankSum=0.000;QUALapprox=226;RAW_GT_COUNT=0,0,1;RAW_MQandDP=225316,63;ReadPosRankSum=0.180;VarDP=58 GT:AD:DP:GQ:PL:SB 1:26,32,0:58:99:226,0,1046:10,16,14,18 +chrX 1215977 . G . . END=1216076 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1588 +chrX 1216077 . A G, 107.04 . AS_QUALapprox=|117|0;AS_VarDP=26|31|0;BaseQRankSum=-0.810;DP=63;MQRankSum=-0.881;QUALapprox=117;RAW_GT_COUNT=0,0,1;RAW_MQandDP=224632,63;ReadPosRankSum=-1.090;VarDP=57 GT:AD:DP:GQ:PL:SB 1:26,31,0:57:99:117,0,961:9,17,13,18 +chrX 1216078 . T . . END=1216333 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,104 +chrX 1216334 . T C, 104.04 . AS_QUALapprox=|114|0;AS_VarDP=21|25|0;BaseQRankSum=-1.397;DP=47;MQRankSum=0.000;QUALapprox=114;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;ReadPosRankSum=1.853;VarDP=46 GT:AD:DP:GQ:PL:SB 1:21,25,0:46:99:114,0,819:11,10,17,8 +chrX 1216335 . G . . END=1216928 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1181 +chrX 1216929 . C T, 1579.04 . AS_QUALapprox=|1589|0;AS_VarDP=0|46|0;DP=51;QUALapprox=1589;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=46 GT:AD:DP:GQ:PL:SB 1:0,46,0:46:99:1589,0,1589:0,0,26,20 +chrX 1216930 . G . . END=1217814 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1394 +chrX 1217815 . A G, 1711.04 . AS_QUALapprox=|1721|0;AS_VarDP=0|53|0;DP=57;QUALapprox=1721;RAW_GT_COUNT=0,0,1;RAW_MQandDP=199925,57;VarDP=53 GT:AD:DP:GQ:PL:SB 1:0,53,0:53:99:1721,0,1721:0,0,26,27 +chrX 1217816 . C . . END=1218625 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1113 +chrX 1218626 . C CATAGATAG, 23 . AS_QUALapprox=|33|0;AS_VarDP=22|23|0;BaseQRankSum=-1.047;DP=68;MQRankSum=1.067;QUALapprox=33;RAW_GT_COUNT=0,0,1;RAW_MQandDP=243904,68;ReadPosRankSum=1.387;VarDP=45 GT:AD:DP:GQ:PL:SB 1:22,23,0:45:33:33,0,1004:11,11,11,12 +chrX 1218627 . A . . END=1218667 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1800 +chrX 1218668 . T TAGAC, 0.01 . AS_QUALapprox=|2|0;AS_VarDP=30|32|0;BaseQRankSum=-0.844;DP=68;MQRankSum=-0.936;QUALapprox=2;RAW_GT_COUNT=0,0,1;RAW_MQandDP=243904,68;ReadPosRankSum=2.114;VarDP=62 GT:AD:DP:GQ:PL:SB 1:30,32,0:62:2:2,0,1216:15,15,16,16 +chrX 1218669 . A . . END=1218743 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1547 +chrX 1218744 . TA T, 375.01 . AS_QUALapprox=|385|0;AS_VarDP=18|27|0;BaseQRankSum=1.770;DP=65;MQRankSum=0.000;QUALapprox=385;RAW_GT_COUNT=0,0,1;RAW_MQandDP=233104,65;ReadPosRankSum=-0.661;VarDP=45 GT:AD:DP:GQ:PL:SB 1:18,27,0:45:99:385,0,1195:8,10,12,15 +chrX 1218746 . G . . END=1218747 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1800 +chrX 1218748 . T TA,TAGATGATA, 2128.01 . AS_QUALapprox=|2138|1745|0;AS_VarDP=0|27|18|0;DP=66;QUALapprox=2138;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=45 GT:AD:DP:GQ:PL:SB 1:0,27,18,0:45:99:2138,0,393,1670:0,0,20,25 +chrX 1218749 . G . . END=1219472 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,774 +chrX 1219473 . G A, 1722.04 . AS_QUALapprox=|1732|0;AS_VarDP=1|53|0;BaseQRankSum=-0.294;DP=57;MQRankSum=0.000;QUALapprox=1732;RAW_GT_COUNT=0,0,1;RAW_MQandDP=204625,57;ReadPosRankSum=-0.514;VarDP=54 GT:AD:DP:GQ:PL:SB 1:1,53,0:54:99:1732,0,1767:1,0,24,29 +chrX 1219474 . T . . END=1219510 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1575 +chrX 1219511 . G GATACATAC, 1715.01 . AS_QUALapprox=|1725|0;AS_VarDP=1|42|0;BaseQRankSum=-0.382;DP=69;MQRankSum=0.000;QUALapprox=1725;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;ReadPosRankSum=-0.968;VarDP=43 GT:AD:DP:GQ:PL:SB 1:1,42,0:43:99:1725,0,1774:1,0,22,20 +chrX 1219512 . A . . END=1220492 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1086 +chrX 1220493 . G C, 279.04 . AS_QUALapprox=|289|0;AS_VarDP=19|30|0;BaseQRankSum=1.147;DP=54;MQRankSum=0.000;QUALapprox=289;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;ReadPosRankSum=0.934;VarDP=49 GT:AD:DP:GQ:PL:SB 1:19,30,0:49:99:289,0,899:9,10,17,13 +chrX 1220494 . A . . END=1227534 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,700 +chrX 1227535 . A AGGAT, 34.01 . AS_QUALapprox=|44|0;AS_VarDP=7|8|0;BaseQRankSum=-1.111;DP=34;MQRankSum=0.728;QUALapprox=44;RAW_GT_COUNT=0,0,1;RAW_MQandDP=116198,34;ReadPosRankSum=-0.564;VarDP=15 GT:AD:DP:GQ:PL:SB 1:7,8,0:15:44:44,0,360:4,3,5,3 +chrX 1227536 . G . . END=1228285 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,506 +chrX 1228286 . G T, 1772.04 . AS_QUALapprox=|1782|0;AS_VarDP=1|56|0;BaseQRankSum=-0.502;DP=63;MQRankSum=0.000;QUALapprox=1782;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226225,63;ReadPosRankSum=-0.578;VarDP=57 GT:AD:DP:GQ:PL:SB 1:1,56,0:57:99:1782,0,1816:1,0,28,28 +chrX 1228287 . G . . END=1231353 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1008 +chrX 1231354 . G GA, 633.01 . AS_QUALapprox=|643|0;AS_VarDP=0|32|0;DP=48;QUALapprox=643;RAW_GT_COUNT=0,0,1;RAW_MQandDP=168354,48;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:643,0,643:0,0,17,15 +chrX 1231355 . A . . END=1232321 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1141 +chrX 1232322 . T C, 2047.04 . AS_QUALapprox=|2057|0;AS_VarDP=0|63|0;DP=65;QUALapprox=2057;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,63,0:63:99:2057,0,2057:0,0,36,27 +chrX 1232323 . T . . END=1232786 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1477 +chrX 1232787 . G C, 2181.04 . AS_QUALapprox=|2191|0;AS_VarDP=0|72|0;DP=74;QUALapprox=2191;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,72,0:72:99:2191,0,2191:0,0,35,37 +chrX 1232788 . G . . END=1232822 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1800 +chrX 1232823 . G A, 2223.04 . AS_QUALapprox=|2233|0;AS_VarDP=0|68|0;DP=71;QUALapprox=2233;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,68,0:68:99:2233,0,2233:0,0,41,27 +chrX 1232824 . T . . END=1232866 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1800 +chrX 1232867 . G A, 2108.04 . AS_QUALapprox=|2118|0;AS_VarDP=1|69|0;BaseQRankSum=-0.597;DP=74;MQRankSum=0.000;QUALapprox=2118;RAW_GT_COUNT=0,0,1;RAW_MQandDP=265401,74;ReadPosRankSum=0.198;VarDP=70 GT:AD:DP:GQ:PL:SB 1:1,69,0:70:99:2118,0,2152:1,0,37,32 +chrX 1232868 . A . . END=1238796 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,129 +chrX 1238797 . G A, 453.04 . AS_QUALapprox=|463|0;AS_VarDP=20|31|0;BaseQRankSum=-0.783;DP=52;MQRankSum=0.455;QUALapprox=463;RAW_GT_COUNT=0,0,1;RAW_MQandDP=181788,52;ReadPosRankSum=0.545;VarDP=51 GT:AD:DP:GQ:PL:SB 1:20,31,0:51:99:463,0,1353:11,9,15,16 +chrX 1238798 . G . . END=1238807 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,1597 +chrX 1238808 . C T, 488.04 . AS_QUALapprox=|498|0;AS_VarDP=19|31|0;BaseQRankSum=-0.397;DP=50;MQRankSum=0.510;QUALapprox=498;RAW_GT_COUNT=0,0,1;RAW_MQandDP=174588,50;ReadPosRankSum=0.452;VarDP=50 GT:AD:DP:GQ:PL:SB 1:19,31,0:50:99:498,0,1353:10,9,15,16 +chrX 1238809 . G . . END=1239187 GT:DP:GQ:MIN_DP:PL 0:55:55:54:0,55 +chrX 1239188 . G GAGA, 78.01 . AS_QUALapprox=|88|0;AS_VarDP=34|36|0;BaseQRankSum=0.721;DP=75;MQRankSum=0.000;QUALapprox=88;RAW_GT_COUNT=0,0,1;RAW_MQandDP=270000,75;ReadPosRankSum=-1.087;VarDP=70 GT:AD:DP:GQ:PL:SB 1:34,36,0:70:88:88,0,1609:12,22,13,23 +chrX 1239189 . A . . END=1239544 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,100 +chrX 1239545 . A G, 52.04 . AS_QUALapprox=|62|0;AS_VarDP=20|27|0;BaseQRankSum=-3.949;DP=48;MQRankSum=-0.818;QUALapprox=62;RAW_GT_COUNT=0,0,1;RAW_MQandDP=171316,48;ReadPosRankSum=-1.109;VarDP=47 GT:AD:DP:GQ:PL:SB 1:20,27,0:47:62:62,0,758:6,14,11,16 +chrX 1239546 . C . . END=1240098 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1035 +chrX 1240099 . G C, 2629.04 . AS_QUALapprox=|2639|0;AS_VarDP=0|83|0;DP=85;QUALapprox=2639;RAW_GT_COUNT=0,0,1;RAW_MQandDP=305764,85;VarDP=83 GT:AD:DP:GQ:PL:SB 1:0,83,0:83:99:2639,0,2639:0,0,46,37 +chrX 1240100 . T . . END=1240386 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1587 +chrX 1240387 . C A, 1732.04 . AS_QUALapprox=|1742|0;AS_VarDP=1|53|0;BaseQRankSum=2.569;DP=57;MQRankSum=-0.294;QUALapprox=1742;RAW_GT_COUNT=0,0,1;RAW_MQandDP=199026,57;ReadPosRankSum=-1.445;VarDP=54 GT:AD:DP:GQ:PL:SB 1:1,53,0:54:99:1742,0,1751:0,1,33,20 +chrX 1240388 . A . . END=1240627 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1642 +chrX 1240628 . C G, 2124.04 . AS_QUALapprox=|2134|0;AS_VarDP=0|66|0;DP=67;QUALapprox=2134;RAW_GT_COUNT=0,0,1;RAW_MQandDP=240625,67;VarDP=66 GT:AD:DP:GQ:PL:SB 1:0,66,0:66:99:2134,0,2134:0,0,23,43 +chrX 1240629 . G . . END=1240770 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1800 +chrX 1240771 . G C, 3.21 . AS_QUALapprox=|13|0;AS_VarDP=30|29|0;BaseQRankSum=1.070;DP=61;MQRankSum=0.000;QUALapprox=13;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;ReadPosRankSum=0.174;VarDP=59 GT:AD:DP:GQ:PL:SB 1:30,29,0:59:13:13,0,978:17,13,13,16 +chrX 1240772 . C . . END=1241112 GT:DP:GQ:MIN_DP:PL 0:44:84:44:0,84 +chrX 1241113 . T . . END=1241115 GT:DP:GQ:MIN_DP:PL 0:6:0:6:0,0 +chrX 1241116 . C . . END=1242368 GT:DP:GQ:MIN_DP:PL 0:36:39:6:0,39 +chrX 1242369 . A G, 431.04 . AS_QUALapprox=|441|0;AS_VarDP=19|34|0;BaseQRankSum=-0.967;DP=55;MQRankSum=2.158;QUALapprox=441;RAW_GT_COUNT=0,0,1;RAW_MQandDP=193732,55;ReadPosRankSum=0.176;VarDP=53 GT:AD:DP:GQ:PL:SB 1:19,34,0:53:99:441,0,1081:12,7,18,16 +chrX 1242370 . G . . END=1242772 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1349 +chrX 1242773 . C T, 917.04 . AS_QUALapprox=|927|0;AS_VarDP=28|49|0;BaseQRankSum=-2.035;DP=81;MQRankSum=-1.311;QUALapprox=927;RAW_GT_COUNT=0,0,1;RAW_MQandDP=287442,81;ReadPosRankSum=-0.924;VarDP=77 GT:AD:DP:GQ:PL:SB 1:28,49,0:77:99:927,0,2144:18,10,19,30 +chrX 1242774 . C . . END=1242780 GT:DP:GQ:MIN_DP:PL 0:74:99:74:0,1800 +chrX 1242781 . A C, 1135.04 . AS_QUALapprox=|1145|0;AS_VarDP=26|51|0;BaseQRankSum=-1.853;DP=77;MQRankSum=-1.237;QUALapprox=1145;RAW_GT_COUNT=0,0,1;RAW_MQandDP=273042,77;ReadPosRankSum=-1.283;VarDP=77 GT:AD:DP:GQ:PL:SB 1:26,51,0:77:99:1145,0,2295:16,10,18,33 +chrX 1242782 . C T, 1230.04 . AS_QUALapprox=|1240|0;AS_VarDP=25|53|0;BaseQRankSum=-1.473;DP=78;MQRankSum=-1.189;QUALapprox=1240;RAW_GT_COUNT=0,0,1;RAW_MQandDP=276642,78;ReadPosRankSum=-1.272;VarDP=78 GT:AD:DP:GQ:PL:SB 1:25,53,0:78:99:1240,0,2365:15,10,20,33 +chrX 1242783 . C . . END=1242795 GT:DP:GQ:MIN_DP:PL 0:77:99:77:0,770 +chrX 1242796 . A G, 1073.04 . AS_QUALapprox=|1083|0;AS_VarDP=26|51|0;BaseQRankSum=1.951;DP=79;MQRankSum=-1.237;QUALapprox=1083;RAW_GT_COUNT=0,0,1;RAW_MQandDP=280242,79;ReadPosRankSum=-0.593;VarDP=77 GT:AD:DP:GQ:PL:SB 1:26,51,0:77:99:1083,0,2253:16,10,17,34 +chrX 1242797 . G . . END=1243116 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1252 +chrX 1243117 . A G, 317.04 . AS_QUALapprox=|327|0;AS_VarDP=18|31|0;BaseQRankSum=-1.103;DP=54;MQRankSum=0.000;QUALapprox=327;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;ReadPosRankSum=-1.909;VarDP=49 GT:AD:DP:GQ:PL:SB 1:18,31,0:49:99:327,0,923:5,13,10,21 +chrX 1243118 . G . . END=1243319 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1587 +chrX 1243320 . G A, 75.04 . AS_QUALapprox=|85|0;AS_VarDP=26|27|0;BaseQRankSum=1.760;DP=53;MQRankSum=0.000;QUALapprox=85;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;ReadPosRankSum=-1.335;VarDP=53 GT:AD:DP:GQ:PL:SB 1:26,27,0:53:85:85,0,909:14,12,12,15 +chrX 1243321 . A . . END=1243665 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,154 +chrX 1243666 . T TAA, 44.01 . AS_QUALapprox=|54|0;AS_VarDP=13|18|0;BaseQRankSum=1.044;DP=49;MQRankSum=-0.784;QUALapprox=54;RAW_GT_COUNT=0,0,1;RAW_MQandDP=174400,49;ReadPosRankSum=-1.305;VarDP=31 GT:AD:DP:GQ:PL:SB 1:13,18,0:31:54:54,0,444:5,8,11,7 +chrX 1243667 . A . . END=1244478 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,961 +chrX 1244479 . G GAGAA, 1969.01 . AS_QUALapprox=|1979|0;AS_VarDP=0|45|0;DP=53;QUALapprox=1979;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=45 GT:AD:DP:GQ:PL:SB 1:0,45,0:45:99:1979,0,1980:0,0,26,19 +chrX 1244480 . A . . END=1244531 GT:DP:GQ:MIN_DP:PL 0:45:34:38:0,34 +chrX 1244532 . A . . END=1244535 GT:DP:GQ:MIN_DP:PL 0:38:0:38:0,0 +chrX 1244536 . A . . END=1244564 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,225 +chrX 1244565 . A AGGCGAG, 305.01 . AS_QUALapprox=|315|0;AS_VarDP=10|17|0;BaseQRankSum=0.456;DP=29;MQRankSum=-1.816;QUALapprox=315;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93497,29;ReadPosRankSum=-0.276;VarDP=27 GT:AD:DP:GQ:PL:SB 1:10,17,0:27:99:315,0,765:10,0,17,0 +chrX 1244566 . G . . END=1244587 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,270 +chrX 1244588 . G GAA, 305.01 . AS_QUALapprox=|315|0;AS_VarDP=7|14|0;BaseQRankSum=0.586;DP=26;MQRankSum=-1.698;QUALapprox=315;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82697,26;ReadPosRankSum=-1.120;VarDP=21 GT:AD:DP:GQ:PL:SB 1:7,14,0:21:99:315,0,630:7,0,14,0 +chrX 1244589 . G GGGAAGGGA, 305.01 . AS_QUALapprox=|315|0;AS_VarDP=7|14|0;BaseQRankSum=1.265;DP=26;MQRankSum=-1.698;QUALapprox=315;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82697,26;ReadPosRankSum=-0.930;VarDP=21 GT:AD:DP:GQ:PL:SB 1:7,14,0:21:99:315,0,630:7,0,14,0 +chrX 1244590 . A . . END=1244593 GT:DP:GQ:MIN_DP:PL 0:22:99:22:0,270 +chrX 1244594 . G GGGAAGGGAAGGGA,A, 800.04 . AS_QUALapprox=|675|810|0;AS_VarDP=0|7|10|0;DP=26;QUALapprox=810;RAW_GT_COUNT=0,0,1;RAW_MQandDP=78790,26;VarDP=17 GT:AD:DP:GQ:PL:SB 2:0,7,10,0:17:99:810,135,0,630:0,0,17,0 +chrX 1244595 . A . . END=1244598 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,585 +chrX 1244599 . G A, 1112.04 . AS_QUALapprox=|1122|0;AS_VarDP=0|25|0;DP=26;QUALapprox=1122;RAW_GT_COUNT=0,0,1;RAW_MQandDP=76790,26;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:1122,0,1122:0,0,25,0 +chrX 1244600 . A . . END=1244608 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,675 +chrX 1244609 . G A, 1061.04 . AS_QUALapprox=|1071|0;AS_VarDP=1|24|0;BaseQRankSum=2.386;DP=33;MQRankSum=-0.526;QUALapprox=1071;RAW_GT_COUNT=0,0,1;RAW_MQandDP=101990,33;ReadPosRankSum=-1.179;VarDP=25 GT:AD:DP:GQ:PL:SB 1:1,24,0:25:99:1071,0,1077:0,1,24,0 +chrX 1244610 . A . . END=1245106 GT:DP:GQ:MIN_DP:PL 0:75:99:75:0,387 +chrX 1245107 . AAT A, 22 . AS_QUALapprox=|32|0;AS_VarDP=33|32|0;BaseQRankSum=1.959;DP=66;MQRankSum=0.736;QUALapprox=32;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226742,66;ReadPosRankSum=-1.585;VarDP=65 GT:AD:DP:GQ:PL:SB 1:33,32,0:65:32:32,0,1017:21,12,15,17 +chrX 1245110 . G GGGGT, 22 . AS_QUALapprox=|32|0;AS_VarDP=33|32|0;BaseQRankSum=2.186;DP=66;MQRankSum=0.736;QUALapprox=32;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226742,66;ReadPosRankSum=-1.405;VarDP=65 GT:AD:DP:GQ:PL:SB 1:33,32,0:65:32:32,0,1017:21,12,15,17 +chrX 1245111 . G . . END=1245111 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1215 +chrX 1245112 . CAT C, 65.04 . AS_QUALapprox=|1919|0;AS_VarDP=1|65|0;BaseQRankSum=1.987;DP=70;MQRankSum=2.872;QUALapprox=1919;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241142,70;ReadPosRankSum=-0.671;VarDP=66 GT:AD:DP:GQ:PL:SB 1:1,65,0:66:99:1919,0,1487:0,1,15,17 +chrX 1245114 . T *,TGC, 24.64 . AS_QUALapprox=|0|1828|0;AS_VarDP=1|30|31|0;BaseQRankSum=1.049;DP=67;MQRankSum=2.686;QUALapprox=1828;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230342,67;ReadPosRankSum=-0.671;VarDP=62 GT:AD:DP:GQ:PL:SB 2:1,30,31,0:62:9:1828,9,0,1412:0,1,34,27 +chrX 1245115 . G . . END=1245291 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1583 +chrX 1245292 . T C, 34.04 . AS_QUALapprox=|44|0;AS_VarDP=33|35|0;BaseQRankSum=-0.203;DP=73;MQRankSum=0.000;QUALapprox=44;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;ReadPosRankSum=0.780;VarDP=68 GT:AD:DP:GQ:PL:SB 1:33,35,0:68:44:44,0,1096:16,17,14,21 +chrX 1245293 . C . . END=1245455 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1562 +chrX 1245456 . A G, 1516.04 . AS_QUALapprox=|1526|0;AS_VarDP=0|51|0;DP=52;QUALapprox=1526;RAW_GT_COUNT=0,0,1;RAW_MQandDP=181305,52;VarDP=51 GT:AD:DP:GQ:PL:SB 1:0,51,0:51:99:1526,0,1526:0,0,28,23 +chrX 1245457 . C . . END=1245699 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,616 +chrX 1245700 . G C, 122.04 . AS_QUALapprox=|132|0;AS_VarDP=22|27|0;BaseQRankSum=-0.679;DP=49;MQRankSum=0.000;QUALapprox=132;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;ReadPosRankSum=2.081;VarDP=49 GT:AD:DP:GQ:PL:SB 1:22,27,0:49:99:132,0,853:12,10,13,14 +chrX 1245701 . T . . END=1245745 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,1464 +chrX 1245746 . A T, 109.04 . AS_QUALapprox=|119|0;AS_VarDP=21|25|0;BaseQRankSum=-0.624;DP=48;MQRankSum=0.000;QUALapprox=119;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;ReadPosRankSum=-2.427;VarDP=46 GT:AD:DP:GQ:PL:SB 1:21,25,0:46:99:119,0,829:10,11,10,15 +chrX 1245747 . G . . END=1246224 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1315 +chrX 1246225 . G A, 537.04 . AS_QUALapprox=|547|0;AS_VarDP=12|27|0;BaseQRankSum=1.556;DP=41;MQRankSum=0.000;QUALapprox=547;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147600,41;ReadPosRankSum=-0.533;VarDP=39 GT:AD:DP:GQ:PL:SB 1:12,27,0:39:99:547,0,939:8,4,18,9 +chrX 1246226 . A . . END=1246239 GT:DP:GQ:MIN_DP:PL 0:37:99:37:0,1101 +chrX 1246240 . C T, 1582.04 . AS_QUALapprox=|1592|0;AS_VarDP=0|38|0;DP=40;QUALapprox=1592;RAW_GT_COUNT=0,0,1;RAW_MQandDP=144000,40;VarDP=38 GT:AD:DP:GQ:PL:SB 1:0,38,0:38:99:1592,0,1592:0,0,27,11 +chrX 1246241 . A . . END=1246244 GT:DP:GQ:MIN_DP:PL 0:37:99:37:0,1156 +chrX 1246245 . CAAA C,CAAAAAA, 552.01 . AS_QUALapprox=|169|562|0;AS_VarDP=0|13|18|0;DP=66;QUALapprox=562;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230353,66;VarDP=31 GT:AD:DP:GQ:PL:SB 2:0,13,18,0:31:99:562,393,0,767:0,0,22,9 +chrX 1246249 . A . . END=1246343 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1403 +chrX 1246344 . G A, 2364.04 . AS_QUALapprox=|2374|0;AS_VarDP=0|53|0;DP=58;QUALapprox=2374;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205233,58;VarDP=53 GT:AD:DP:GQ:PL:SB 1:0,53,0:53:99:2374,0,2374:0,0,25,28 +chrX 1246345 . T G, 2398.04 . AS_QUALapprox=|2408|0;AS_VarDP=0|55|0;DP=58;QUALapprox=2408;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205233,58;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:2408,0,2408:0,0,25,30 +chrX 1246346 . C . . END=1246350 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1722 +chrX 1246351 . G A, 283.04 . AS_QUALapprox=|293|0;AS_VarDP=24|34|0;BaseQRankSum=1.343;DP=59;MQRankSum=2.119;QUALapprox=293;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208833,59;ReadPosRankSum=0.126;VarDP=58 GT:AD:DP:GQ:PL:SB 1:24,34,0:58:99:293,0,1081:9,15,17,17 +chrX 1246352 . G . . END=1246558 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1468 +chrX 1246559 . C T, 1927.04 . AS_QUALapprox=|1937|0;AS_VarDP=0|56|0;DP=60;QUALapprox=1937;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115287,60;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,56,0:56:99:1937,0,1937:0,0,33,23 +chrX 1246560 . C . . END=1246654 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1439 +chrX 1246655 . A G, 1820.04 . AS_QUALapprox=|1830|0;AS_VarDP=1|57|0;BaseQRankSum=-0.410;DP=60;MQRankSum=-0.646;QUALapprox=1830;RAW_GT_COUNT=0,0,1;RAW_MQandDP=182469,60;ReadPosRankSum=1.285;VarDP=58 GT:AD:DP:GQ:PL:SB 1:1,57,0:58:99:1830,0,1865:1,0,31,26 +chrX 1246656 . C . . END=1246850 GT:DP:GQ:MIN_DP:PL 0:58:27:52:0,27 +chrX 1246851 . A G, 1468.04 . AS_QUALapprox=|1478|0;AS_VarDP=0|48|0;DP=49;QUALapprox=1478;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=48 GT:AD:DP:GQ:PL:SB 1:0,48,0:48:99:1478,0,1478:0,0,21,27 +chrX 1246852 . C . . END=1247192 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,511 +chrX 1247193 . T TAA, 1420.01 . AS_QUALapprox=|1430|0;AS_VarDP=0|44|0;DP=53;QUALapprox=1430;RAW_GT_COUNT=0,0,1;RAW_MQandDP=188800,53;VarDP=44 GT:AD:DP:GQ:PL:SB 1:0,44,0:44:99:1430,0,1430:0,0,26,18 +chrX 1247194 . A . . END=1247346 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,189 +chrX 1247347 . A G, 2570.04 . AS_QUALapprox=|2580|0;AS_VarDP=0|66|0;DP=68;QUALapprox=2580;RAW_GT_COUNT=0,0,1;RAW_MQandDP=239384,68;VarDP=66 GT:AD:DP:GQ:PL:SB 1:0,66,0:66:99:2580,0,2580:0,0,29,37 +chrX 1247348 . C . . END=1247350 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1800 +chrX 1247351 . G A, 248.04 . AS_QUALapprox=|258|0;AS_VarDP=29|37|0;BaseQRankSum=0.681;DP=68;MQRankSum=-1.668;QUALapprox=258;RAW_GT_COUNT=0,0,1;RAW_MQandDP=239384,68;ReadPosRankSum=1.202;VarDP=66 GT:AD:DP:GQ:PL:SB 1:29,37,0:66:99:258,0,1170:14,15,15,22 +chrX 1247352 . A . . END=1247439 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1381 +chrX 1247440 . CAA C, 1429.01 . AS_QUALapprox=|1439|0;AS_VarDP=0|43|0;DP=69;QUALapprox=1439;RAW_GT_COUNT=0,0,1;RAW_MQandDP=243646,69;VarDP=43 GT:AD:DP:GQ:PL:SB 1:0,43,0:43:99:1439,0,1439:0,0,19,24 +chrX 1247443 . A . . END=1247881 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,155 +chrX 1247882 . GGAGAGA G,GGAGAGAGA, 327.01 . AS_QUALapprox=|337|195|0;AS_VarDP=0|11|6|0;DP=33;QUALapprox=337;RAW_GT_COUNT=0,0,1;RAW_MQandDP=116224,33;VarDP=17 GT:AD:DP:GQ:PL:SB 1:0,11,6,0:17:99:337,0,142,411:0,0,6,11 +chrX 1247889 . G . . END=1248090 GT:DP:GQ:MIN_DP:PL 0:27:90:27:0,90 +chrX 1248091 . T . . END=1248091 GT:DP:GQ:MIN_DP:PL 0:8:0:8:0,0 +chrX 1248092 . A . . END=1248131 GT:DP:GQ:MIN_DP:PL 0:7:95:7:0,95 +chrX 1248132 . A . . END=1248132 GT:DP:GQ:MIN_DP:PL 0:6:10:6:0,10 +chrX 1248133 . G . . END=1248454 GT:DP:GQ:MIN_DP:PL 0:25:43:25:0,43 +chrX 1248455 . C CGAGAG, 1607.01 . AS_QUALapprox=|1617|0;AS_VarDP=0|37|0;DP=48;QUALapprox=1617;RAW_GT_COUNT=0,0,1;RAW_MQandDP=168330,48;VarDP=37 GT:AD:DP:GQ:PL:SB 1:0,37,0:37:99:1617,0,1618:0,0,23,14 +chrX 1248456 . G . . END=1249128 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1602 +chrX 1249129 . C T, 2287.04 . AS_QUALapprox=|2297|0;AS_VarDP=0|54|0;DP=58;QUALapprox=2297;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=54 GT:AD:DP:GQ:PL:SB 1:0,54,0:54:99:2297,0,2297:0,0,33,21 +chrX 1249130 . C . . END=1249143 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,1499 +chrX 1249144 . C G, 2518.04 . AS_QUALapprox=|2528|0;AS_VarDP=0|58|0;DP=59;QUALapprox=2528;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,58,0:58:99:2528,0,2528:0,0,38,20 +chrX 1249145 . C . . END=1249150 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1633 +chrX 1249151 . CCA C, 2420.01 . AS_QUALapprox=|2430|0;AS_VarDP=0|54|0;DP=55;QUALapprox=2430;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=54 GT:AD:DP:GQ:PL:SB 1:0,54,0:54:99:2430,0,2430:0,0,38,16 +chrX 1249154 . C . . END=1249174 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1438 +chrX 1249175 . C T, 2189.04 . AS_QUALapprox=|2199|0;AS_VarDP=0|50|0;DP=51;QUALapprox=2199;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,50,0:50:99:2199,0,2199:0,0,32,18 +chrX 1249176 . G . . END=1249913 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1220 +chrX 1249914 . T G, 2009.04 . AS_QUALapprox=|2019|0;AS_VarDP=0|64|0;DP=66;QUALapprox=2019;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237025,66;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,64,0:64:99:2019,0,2019:0,0,30,34 +chrX 1249915 . C . . END=1250509 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1240 +chrX 1250510 . CTAGA C, 1805.01 . AS_QUALapprox=|1815|0;AS_VarDP=1|42|0;BaseQRankSum=2.202;DP=64;MQRankSum=0.000;QUALapprox=1815;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;ReadPosRankSum=1.371;VarDP=43 GT:AD:DP:GQ:PL:SB 1:1,42,0:43:99:1815,0,1830:0,1,30,12 +chrX 1250515 . T . . END=1251070 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1354 +chrX 1251071 . T TGATA, 1958.01 . AS_QUALapprox=|1968|0;AS_VarDP=0|45|0;DP=47;QUALapprox=1968;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;VarDP=45 GT:AD:DP:GQ:PL:SB 1:0,45,0:45:99:1968,0,1968:0,0,24,21 +chrX 1251072 . G . . END=1251131 GT:DP:GQ:MIN_DP:PL 0:41:99:41:0,1225 +chrX 1251132 . A ATATC, 1759.01 . AS_QUALapprox=|1769|0;AS_VarDP=0|40|0;DP=42;QUALapprox=1769;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151200,42;VarDP=40 GT:AD:DP:GQ:PL:SB 1:0,40,0:40:99:1769,0,1769:0,0,23,17 +chrX 1251133 . T . . END=1251391 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,183 +chrX 1251392 . C T, 2321.04 . AS_QUALapprox=|2331|0;AS_VarDP=0|52|0;DP=52;QUALapprox=2331;RAW_GT_COUNT=0,0,1;RAW_MQandDP=185699,52;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:2331,0,2331:0,0,24,28 +chrX 1251393 . C . . END=1251398 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1643 +chrX 1251399 . G A, 2321.04 . AS_QUALapprox=|2331|0;AS_VarDP=0|52|0;DP=52;QUALapprox=2331;RAW_GT_COUNT=0,0,1;RAW_MQandDP=185699,52;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:2331,0,2331:0,0,23,29 +chrX 1251400 . G . . END=1251428 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,1538 +chrX 1251429 . G A, 2285.04 . AS_QUALapprox=|2295|0;AS_VarDP=0|51|0;DP=51;QUALapprox=2295;RAW_GT_COUNT=0,0,1;RAW_MQandDP=182099,51;VarDP=51 GT:AD:DP:GQ:PL:SB 1:0,51,0:51:99:2295,0,2295:0,0,24,27 +chrX 1251430 . T . . END=1251433 GT:DP:GQ:MIN_DP:PL 0:47:99:47:0,1549 +chrX 1251434 . T A, 2105.04 . AS_QUALapprox=|2115|0;AS_VarDP=0|47|0;DP=47;QUALapprox=2115;RAW_GT_COUNT=0,0,1;RAW_MQandDP=167699,47;VarDP=47 GT:AD:DP:GQ:PL:SB 1:0,47,0:47:99:2115,0,2115:0,0,25,22 +chrX 1251435 . C . . END=1251479 GT:DP:GQ:MIN_DP:PL 0:45:99:45:0,1316 +chrX 1251480 . TATGGGTATATCCAC T, 2186.01 . AS_QUALapprox=|2196|0;AS_VarDP=0|49|0;DP=49;QUALapprox=2196;RAW_GT_COUNT=0,0,1;RAW_MQandDP=174899,49;VarDP=49 GT:AD:DP:GQ:PL:SB 1:0,49,0:49:99:2196,0,2196:0,0,28,21 +chrX 1251495 . A . . END=1251498 GT:DP:GQ:MIN_DP:PL 0:44:99:44:0,1380 +chrX 1251499 . ATATACCCATATGGGTATATCCACATAGATATACCCATATGGGTATATCCACATAGATATACCCATATGGG A, 2091.01 . AS_QUALapprox=|2101|0;AS_VarDP=0|47|0;DP=51;QUALapprox=2101;RAW_GT_COUNT=0,0,1;RAW_MQandDP=182099,51;VarDP=47 GT:AD:DP:GQ:PL:SB 1:0,47,0:47:99:2101,0,2101:0,0,27,20 +chrX 1251570 . T . . END=1251869 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1463 +chrX 1251870 . TAGATAGATAGAC T, 125.01 . AS_QUALapprox=|135|0;AS_VarDP=21|24|0;BaseQRankSum=2.801;DP=65;MQRankSum=-0.891;QUALapprox=135;RAW_GT_COUNT=0,0,1;RAW_MQandDP=232529,65;ReadPosRankSum=0.091;VarDP=45 GT:AD:DP:GQ:PL:SB 1:21,24,0:45:99:135,0,1048:9,12,9,15 +chrX 1251883 . A . . END=1252084 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,1375 +chrX 1252085 . A G, 1677.04 . AS_QUALapprox=|1687|0;AS_VarDP=0|50|0;DP=52;QUALapprox=1687;RAW_GT_COUNT=0,0,1;RAW_MQandDP=186050,52;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,50,0:50:99:1687,0,1687:0,0,23,27 +chrX 1252086 . G . . END=1252254 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1463 +chrX 1252255 . T C, 1910.04 . AS_QUALapprox=|1920|0;AS_VarDP=0|57|0;DP=60;QUALapprox=1920;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:1920,0,1920:0,0,36,21 +chrX 1252256 . T . . END=1253259 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1578 +chrX 1253260 . G A, 1839.04 . AS_QUALapprox=|1849|0;AS_VarDP=1|60|0;BaseQRankSum=-0.664;DP=61;MQRankSum=3.166;QUALapprox=1849;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212301,61;ReadPosRankSum=1.278;VarDP=61 GT:AD:DP:GQ:PL:SB 1:1,60,0:61:99:1849,0,1884:1,0,24,36 +chrX 1253261 . G . . END=1254128 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1251 +chrX 1254129 . G A, 1816.04 . AS_QUALapprox=|1826|0;AS_VarDP=1|56|0;BaseQRankSum=-0.320;DP=60;MQRankSum=0.000;QUALapprox=1826;RAW_GT_COUNT=0,0,1;RAW_MQandDP=215001,60;ReadPosRankSum=-0.486;VarDP=57 GT:AD:DP:GQ:PL:SB 1:1,56,0:57:99:1826,0,1861:1,0,27,29 +chrX 1254130 . T . . END=1254461 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1678 +chrX 1254462 . A G, 1880.04 . AS_QUALapprox=|1890|0;AS_VarDP=1|61|0;BaseQRankSum=-0.524;DP=66;MQRankSum=0.000;QUALapprox=1890;RAW_GT_COUNT=0,0,1;RAW_MQandDP=235764,66;ReadPosRankSum=-1.622;VarDP=62 GT:AD:DP:GQ:PL:SB 1:1,61,0:62:99:1890,0,1924:0,1,29,32 +chrX 1254463 . T . . END=1254532 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1637 +chrX 1254533 . T G, 0.01 . AS_QUALapprox=|1|0;AS_VarDP=27|26|0;BaseQRankSum=0.694;DP=55;MQRankSum=0.000;QUALapprox=1;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;ReadPosRankSum=-0.178;VarDP=53 GT:AD:DP:GQ:PL:SB 1:27,26,0:53:1:1,0,864:13,14,17,9 +chrX 1254534 . A . . END=1255605 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1259 +chrX 1255606 . G T, 1567.04 . AS_QUALapprox=|1577|0;AS_VarDP=0|48|0;DP=50;QUALapprox=1577;RAW_GT_COUNT=0,0,1;RAW_MQandDP=175589,50;VarDP=48 GT:AD:DP:GQ:PL:SB 1:0,48,0:48:99:1577,0,1577:0,0,23,25 +chrX 1255607 . A . . END=1256384 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1336 +chrX 1256385 . T C, 1735.04 . AS_QUALapprox=|1745|0;AS_VarDP=0|55|0;DP=58;QUALapprox=1745;RAW_GT_COUNT=0,0,1;RAW_MQandDP=202007,58;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:1745,0,1745:0,0,29,26 +chrX 1256386 . G . . END=1256886 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,1091 +chrX 1256887 . A G, 1313.04 . AS_QUALapprox=|1323|0;AS_VarDP=0|44|0;DP=46;QUALapprox=1323;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;VarDP=44 GT:AD:DP:GQ:PL:SB 1:0,44,0:44:99:1323,0,1323:0,0,22,22 +chrX 1256888 . C . . END=1257003 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1409 +chrX 1257004 . T C, 1853.04 . AS_QUALapprox=|1863|0;AS_VarDP=0|59|0;DP=60;QUALapprox=1863;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:1863,0,1863:0,0,27,32 +chrX 1257005 . G . . END=1258070 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1473 +chrX 1258071 . A G, 1906.04 . AS_QUALapprox=|1916|0;AS_VarDP=0|60|0;DP=64;QUALapprox=1916;RAW_GT_COUNT=0,0,1;RAW_MQandDP=221150,64;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:1916,0,1916:0,0,36,24 +chrX 1258072 . C . . END=1260664 GT:DP:GQ:MIN_DP:PL 0:56:22:55:0,22 +chrX 1260665 . T C, 137.04 . AS_QUALapprox=|147|0;AS_VarDP=29|32|0;BaseQRankSum=0.171;DP=62;MQRankSum=1.521;QUALapprox=147;RAW_GT_COUNT=0,0,1;RAW_MQandDP=220442,62;ReadPosRankSum=2.108;VarDP=61 GT:AD:DP:GQ:PL:SB 1:29,32,0:61:99:147,0,1440:14,15,15,17 +chrX 1260666 . C . . END=1260668 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1701 +chrX 1260669 . G C, 215.04 . AS_QUALapprox=|225|0;AS_VarDP=28|33|0;BaseQRankSum=0.027;DP=61;MQRankSum=1.571;QUALapprox=225;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216842,61;ReadPosRankSum=2.291;VarDP=61 GT:AD:DP:GQ:PL:SB 1:28,33,0:61:99:225,0,1485:14,14,16,17 +chrX 1260670 . G . . END=1260672 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1746 +chrX 1260673 . C T, 125.04 . AS_QUALapprox=|135|0;AS_VarDP=30|33|0;BaseQRankSum=0.708;DP=63;MQRankSum=1.518;QUALapprox=135;RAW_GT_COUNT=0,0,1;RAW_MQandDP=224042,63;ReadPosRankSum=2.381;VarDP=63 GT:AD:DP:GQ:PL:SB 1:30,33,0:63:99:135,0,1485:15,15,16,17 +chrX 1260674 . A . . END=1260696 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1767 +chrX 1260697 . C . . END=1260697 GT:DP:GQ:MIN_DP:PL 0:57:0:57:0,0 +chrX 1260698 . G . . END=1261399 GT:DP:GQ:MIN_DP:PL 0:60:55:58:0,55 +chrX 1261400 . G A, 603.04 . AS_QUALapprox=|613|0;AS_VarDP=21|40|0;BaseQRankSum=-0.099;DP=63;MQRankSum=0.000;QUALapprox=613;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;ReadPosRankSum=0.380;VarDP=61 GT:AD:DP:GQ:PL:SB 1:21,40,0:61:99:613,0,1313:10,11,26,14 +chrX 1261401 . A . . END=1261640 GT:DP:GQ:MIN_DP:PL 0:62:48:55:0,48 +chrX 1261641 . TTTTTC T, 310.01 . AS_QUALapprox=|320|0;AS_VarDP=18|25|0;BaseQRankSum=-1.737;DP=55;MQRankSum=-0.611;QUALapprox=320;RAW_GT_COUNT=0,0,1;RAW_MQandDP=189769,55;ReadPosRankSum=0.862;VarDP=43 GT:AD:DP:GQ:PL:SB 1:18,25,0:43:99:320,0,1086:5,13,8,17 +chrX 1261647 . T . . END=1261677 GT:DP:GQ:MIN_DP:PL 0:44:99:44:0,729 +chrX 1261678 . TTTC T, 323.01 . AS_QUALapprox=|333|0;AS_VarDP=16|25|0;BaseQRankSum=-1.597;DP=43;MQRankSum=-1.051;QUALapprox=333;RAW_GT_COUNT=0,0,1;RAW_MQandDP=142214,43;ReadPosRankSum=-0.072;VarDP=41 GT:AD:DP:GQ:PL:SB 1:16,25,0:41:99:333,0,778:6,10,8,10 +chrX 1261682 . T . . END=1262273 GT:DP:GQ:MIN_DP:PL 0:62:49:53:0,49 +chrX 1262274 . A G, 201.04 . AS_QUALapprox=|211|0;AS_VarDP=25|29|0;BaseQRankSum=-0.930;DP=54;MQRankSum=-4.166;QUALapprox=211;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147503,54;ReadPosRankSum=-0.918;VarDP=54 GT:AD:DP:GQ:PL:SB 1:25,29,0:54:99:211,0,1254:11,14,19,10 +chrX 1262275 . T . . END=1262295 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1649 +chrX 1262296 . C G, 465.04 . AS_QUALapprox=|475|0;AS_VarDP=24|35|0;BaseQRankSum=-1.020;DP=59;MQRankSum=-3.019;QUALapprox=475;RAW_GT_COUNT=0,0,1;RAW_MQandDP=168987,59;ReadPosRankSum=-0.572;VarDP=59 GT:AD:DP:GQ:PL:SB 1:24,35,0:59:99:475,0,1544:12,12,19,16 +chrX 1262297 . T . . END=1262302 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1722 +chrX 1262303 . A G, 2363.04 . AS_QUALapprox=|2373|0;AS_VarDP=0|60|0;DP=60;QUALapprox=2373;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172587,60;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:2373,0,2373:0,0,30,30 +chrX 1262304 . G . . END=1262314 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1800 +chrX 1262315 . G A, 216.04 . AS_QUALapprox=|226|0;AS_VarDP=28|32|0;BaseQRankSum=0.041;DP=60;MQRankSum=-2.617;QUALapprox=226;RAW_GT_COUNT=0,0,1;RAW_MQandDP=181267,60;ReadPosRankSum=1.475;VarDP=60 GT:AD:DP:GQ:PL:SB 1:28,32,0:60:99:226,0,1358:12,16,15,17 +chrX 1262316 . G . . END=1262401 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1800 +chrX 1262402 . A C, 242.04 . AS_QUALapprox=|252|0;AS_VarDP=28|36|0;BaseQRankSum=0.145;DP=66;MQRankSum=-1.235;QUALapprox=252;RAW_GT_COUNT=0,0,1;RAW_MQandDP=233849,66;ReadPosRankSum=-0.535;VarDP=64 GT:AD:DP:GQ:PL:SB 1:28,36,0:64:99:252,0,1165:12,16,14,22 +chrX 1262403 . G . . END=1262722 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,297 +chrX 1262723 . G A, 686.04 . AS_QUALapprox=|696|0;AS_VarDP=14|33|0;BaseQRankSum=2.264;DP=65;MQRankSum=3.608;QUALapprox=696;RAW_GT_COUNT=0,0,1;RAW_MQandDP=210668,65;ReadPosRankSum=-1.594;VarDP=47 GT:AD:DP:GQ:PL:SB 1:14,33,0:47:99:696,0,1117:3,11,19,14 +chrX 1262724 . C . . END=1262936 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,308 +chrX 1262937 . C T, 352.04 . AS_QUALapprox=|362|0;AS_VarDP=18|31|0;BaseQRankSum=-0.885;DP=53;MQRankSum=0.611;QUALapprox=362;RAW_GT_COUNT=0,0,1;RAW_MQandDP=181816,53;ReadPosRankSum=1.992;VarDP=49 GT:AD:DP:GQ:PL:SB 1:18,31,0:49:99:362,0,892:14,4,16,15 +chrX 1262938 . G . . END=1263240 GT:DP:GQ:MIN_DP:PL 0:79:99:79:0,343 +chrX 1263241 . A C, 2879.04 . AS_QUALapprox=|2889|0;AS_VarDP=0|65|0;DP=68;QUALapprox=2889;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244225,68;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,65,0:65:99:2889,0,2889:0,0,30,35 +chrX 1263242 . A C, 2879.04 . AS_QUALapprox=|2889|0;AS_VarDP=0|65|0;DP=68;QUALapprox=2889;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244225,68;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,65,0:65:99:2889,0,2889:0,0,30,35 +chrX 1263243 . A . . END=1263351 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1800 +chrX 1263352 . G A, 2070.04 . AS_QUALapprox=|2080|0;AS_VarDP=1|61|0;BaseQRankSum=4.069;DP=63;MQRankSum=-0.091;QUALapprox=2080;RAW_GT_COUNT=0,0,1;RAW_MQandDP=225650,63;ReadPosRankSum=0.615;VarDP=62 GT:AD:DP:GQ:PL:SB 1:1,61,0:62:99:2080,0,2089:0,1,29,32 +chrX 1263353 . G . . END=1263390 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1800 +chrX 1263391 . T C, 2281.04 . AS_QUALapprox=|2291|0;AS_VarDP=0|71|0;DP=72;QUALapprox=2291;RAW_GT_COUNT=0,0,1;RAW_MQandDP=258050,72;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,71,0:71:99:2291,0,2291:0,0,36,35 +chrX 1263392 . A . . END=1263792 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1800 +chrX 1263793 . T A, 2901.04 . AS_QUALapprox=|2911|0;AS_VarDP=0|65|0;DP=66;QUALapprox=2911;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,65,0:65:99:2911,0,2911:0,0,24,41 +chrX 1263794 . A . . END=1263799 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1800 +chrX 1263800 . A G, 2985.04 . AS_QUALapprox=|2995|0;AS_VarDP=0|68|0;DP=69;QUALapprox=2995;RAW_GT_COUNT=0,0,1;RAW_MQandDP=245761,69;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,68,0:68:99:2995,0,2995:0,0,25,43 +chrX 1263801 . C . . END=1264026 GT:DP:GQ:MIN_DP:PL 0:61:90:61:0,90 +chrX 1264027 . A . . END=1264027 GT:DP:GQ:MIN_DP:PL 0:6:0:6:0,0 +chrX 1264028 . T . . END=1264311 GT:DP:GQ:MIN_DP:PL 0:2:25:1:0,25 +chrX 1264312 . A . . END=1264312 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 1264313 . A . . END=1264336 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1264337 . G . . END=1264337 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 1264338 . A . . END=1264341 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1264342 . T . . END=1264342 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1264343 . A . . END=1264347 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1264348 . C . . END=1264500 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1264501 . A . . END=1265048 GT:DP:GQ:MIN_DP:PL 0:66:70:66:0,70 +chrX 1265049 . A G, 139.04 . AS_QUALapprox=|149|0;AS_VarDP=29|32|0;BaseQRankSum=1.372;DP=62;MQRankSum=0.000;QUALapprox=149;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;ReadPosRankSum=1.307;VarDP=61 GT:AD:DP:GQ:PL:SB 1:29,32,0:61:99:149,0,1091:14,15,9,23 +chrX 1265050 . T . . END=1265625 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,809 +chrX 1265626 . C T, 96.04 . AS_QUALapprox=|106|0;AS_VarDP=16|19|0;BaseQRankSum=0.000;DP=37;MQRankSum=-0.245;QUALapprox=106;RAW_GT_COUNT=0,0,1;RAW_MQandDP=127459,37;ReadPosRankSum=0.381;VarDP=35 GT:AD:DP:GQ:PL:SB 1:16,19,0:35:99:106,0,661:4,12,4,15 +chrX 1265627 . C . . END=1265771 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1342 +chrX 1265772 . A . . END=1265772 GT:DP:GQ:MIN_DP:PL 0:84:0:84:0,0 +chrX 1265773 . T . . END=1265934 GT:DP:GQ:MIN_DP:PL 0:76:99:76:0,279 +chrX 1265935 . T . . END=1265937 GT:DP:GQ:MIN_DP:PL 0:68:0:68:0,0 +chrX 1265938 . T . . END=1266468 GT:DP:GQ:MIN_DP:PL 0:73:47:65:0,47 +chrX 1266469 . T C, 0.07 . AS_QUALapprox=|6|0;AS_VarDP=35|35|0;BaseQRankSum=0.010;DP=74;MQRankSum=0.000;QUALapprox=6;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;ReadPosRankSum=0.000;VarDP=70 GT:AD:DP:GQ:PL:SB 1:35,35,0:70:6:6,0,1166:18,17,20,15 +chrX 1266470 . T . . END=1267523 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,190 +chrX 1267524 . C T, 231.04 . AS_QUALapprox=|241|0;AS_VarDP=23|37|0;BaseQRankSum=2.071;DP=61;MQRankSum=1.376;QUALapprox=241;RAW_GT_COUNT=0,0,1;RAW_MQandDP=184339,61;ReadPosRankSum=1.445;VarDP=60 GT:AD:DP:GQ:PL:SB 1:23,37,0:60:99:241,0,1207:9,14,23,14 +chrX 1267525 . G . . END=1267867 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1266 +chrX 1267868 . C T, 155.04 . AS_QUALapprox=|165|0;AS_VarDP=27|28|0;BaseQRankSum=2.756;DP=59;MQRankSum=-0.946;QUALapprox=165;RAW_GT_COUNT=0,0,1;RAW_MQandDP=209425,59;ReadPosRankSum=0.160;VarDP=55 GT:AD:DP:GQ:PL:SB 1:27,28,0:55:99:165,0,918:16,11,13,15 +chrX 1267869 . G . . END=1268462 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,115 +chrX 1268463 . ATG A, 2172.01 . AS_QUALapprox=|2182|0;AS_VarDP=0|53|0;DP=54;QUALapprox=2182;RAW_GT_COUNT=0,0,1;RAW_MQandDP=193716,54;VarDP=53 GT:AD:DP:GQ:PL:SB 1:0,53,0:53:99:2182,0,2182:0,0,27,26 +chrX 1268466 . T . . END=1268791 GT:DP:GQ:MIN_DP:PL 0:75:99:75:0,411 +chrX 1268792 . C G, 239.04 . AS_QUALapprox=|249|0;AS_VarDP=29|37|0;BaseQRankSum=-0.848;DP=70;MQRankSum=0.000;QUALapprox=249;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;ReadPosRankSum=-0.840;VarDP=66 GT:AD:DP:GQ:PL:SB 1:29,37,0:66:99:249,0,1236:10,19,17,20 +chrX 1268793 . A . . END=1268953 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1790 +chrX 1268954 . C G, 2018.04 . AS_QUALapprox=|2028|0;AS_VarDP=0|64|0;DP=64;QUALapprox=2028;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,64,0:64:99:2028,0,2028:0,0,30,34 +chrX 1268955 . G . . END=1269338 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1713 +chrX 1269339 . G A, 77.04 . AS_QUALapprox=|87|0;AS_VarDP=27|28|0;BaseQRankSum=0.794;DP=58;MQRankSum=0.078;QUALapprox=87;RAW_GT_COUNT=0,0,1;RAW_MQandDP=206225,58;ReadPosRankSum=0.590;VarDP=55 GT:AD:DP:GQ:PL:SB 1:27,28,0:55:87:87,0,908:12,15,13,15 +chrX 1269340 . G . . END=1269383 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,1537 +chrX 1269384 . A G, 239.04 . AS_QUALapprox=|249|0;AS_VarDP=23|30|0;BaseQRankSum=0.324;DP=55;MQRankSum=-0.764;QUALapprox=249;RAW_GT_COUNT=0,0,1;RAW_MQandDP=193700,55;ReadPosRankSum=0.790;VarDP=53 GT:AD:DP:GQ:PL:SB 1:23,30,0:53:99:249,0,973:10,13,11,19 +chrX 1269385 . C . . END=1269508 GT:DP:GQ:MIN_DP:PL 0:62:56:62:0,56 +chrX 1269509 . C G, 2164.04 . AS_QUALapprox=|2174|0;AS_VarDP=0|65|0;DP=65;QUALapprox=2174;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,65,0:65:99:2174,0,2174:0,0,29,36 +chrX 1269510 . C . . END=1269636 GT:DP:GQ:MIN_DP:PL 0:45:34:44:0,34 +chrX 1269637 . G . . END=1269637 GT:DP:GQ:MIN_DP:PL 0:44:19:44:0,19 +chrX 1269638 . A . . END=1269646 GT:DP:GQ:MIN_DP:PL 0:45:49:45:0,49 +chrX 1269647 . G . . END=1269647 GT:DP:GQ:MIN_DP:PL 0:44:9:44:0,9 +chrX 1269648 . A . . END=1269648 GT:DP:GQ:MIN_DP:PL 0:44:99:44:0,99 +chrX 1269649 . G A, 8.40 . AS_QUALapprox=|933|0;AS_VarDP=2|25|0;DP=44;QUALapprox=933;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151864,44;VarDP=27 GT:AD:DP:GQ:PL:SB 1:2,25,0:27:99:933,0,946:0,0,12,10 +chrX 1269650 . A . . END=1269650 GT:DP:GQ:MIN_DP:PL 0:42:49:42:0,49 +chrX 1269651 . T A, 67.04 . AS_QUALapprox=|978|0;AS_VarDP=1|25|0;DP=44;QUALapprox=978;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151864,44;VarDP=26 GT:AD:DP:GQ:PL:SB 1:1,25,0:26:99:978,0,969:0,0,12,10 +chrX 1269652 . G . . END=1269652 GT:DP:GQ:MIN_DP:PL 0:42:0:42:0,0 +chrX 1269653 . A . . END=1270167 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1626 +chrX 1270168 . A C, 2382.04 . AS_QUALapprox=|2392|0;AS_VarDP=0|75|0;DP=77;QUALapprox=2392;RAW_GT_COUNT=0,0,1;RAW_MQandDP=277200,77;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,75,0:75:99:2392,0,2392:0,0,27,48 +chrX 1270169 . C . . END=1270356 GT:DP:GQ:MIN_DP:PL 0:75:99:75:0,1800 +chrX 1270357 . G T, 2226.04 . AS_QUALapprox=|2236|0;AS_VarDP=0|69|0;DP=73;QUALapprox=2236;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,69,0:69:99:2236,0,2236:0,0,39,30 +chrX 1270358 . G . . END=1270477 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1800 +chrX 1270478 . A G, 2391.04 . AS_QUALapprox=|2401|0;AS_VarDP=0|62|0;DP=65;QUALapprox=2401;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:2401,0,2401:0,0,32,30 +chrX 1270479 . T . . END=1270484 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1800 +chrX 1270485 . T G, 94.04 . AS_QUALapprox=|104|0;AS_VarDP=30|34|0;BaseQRankSum=-0.267;DP=67;MQRankSum=0.000;QUALapprox=104;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;ReadPosRankSum=-1.332;VarDP=64 GT:AD:DP:GQ:PL:SB 1:30,34,0:64:99:104,0,1056:14,16,19,15 +chrX 1270486 . G . . END=1270488 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1800 +chrX 1270489 . C T, 2389.04 . AS_QUALapprox=|2399|0;AS_VarDP=0|63|0;DP=65;QUALapprox=2399;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,63,0:63:99:2399,0,2399:0,0,32,31 +chrX 1270490 . C . . END=1270578 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1438 +chrX 1270579 . T C, 1493.04 . AS_QUALapprox=|1503|0;AS_VarDP=0|47|0;DP=54;QUALapprox=1503;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=47 GT:AD:DP:GQ:PL:SB 1:0,47,0:47:99:1503,0,1503:0,0,19,28 +chrX 1270580 . G . . END=1270638 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,1453 +chrX 1270639 . C T, 58.04 . AS_QUALapprox=|68|0;AS_VarDP=27|27|0;BaseQRankSum=1.675;DP=62;MQRankSum=0.000;QUALapprox=68;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;ReadPosRankSum=0.311;VarDP=54 GT:AD:DP:GQ:PL:SB 1:27,27,0:54:68:68,0,1205:12,15,9,18 +chrX 1270640 . G . . END=1270641 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1672 +chrX 1270642 . T C, 141.04 . AS_QUALapprox=|151|0;AS_VarDP=26|29|0;BaseQRankSum=-0.049;DP=63;MQRankSum=0.000;QUALapprox=151;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;ReadPosRankSum=0.152;VarDP=55 GT:AD:DP:GQ:PL:SB 1:26,29,0:55:99:151,0,1254:12,14,9,20 +chrX 1270643 . C . . END=1270684 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,1652 +chrX 1270685 . A G, 1640.04 . AS_QUALapprox=|1650|0;AS_VarDP=0|53|0;DP=63;QUALapprox=1650;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=53 GT:AD:DP:GQ:PL:SB 1:0,53,0:53:99:1650,0,1650:0,0,24,29 +chrX 1270686 . G . . END=1270856 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,115 +chrX 1270857 . G T, 1418.04 . AS_QUALapprox=|1428|0;AS_VarDP=0|44|0;DP=54;QUALapprox=1428;RAW_GT_COUNT=0,0,1;RAW_MQandDP=179093,54;VarDP=44 GT:AD:DP:GQ:PL:SB 1:0,44,0:44:99:1428,0,1428:0,0,19,25 +chrX 1270858 . G . . END=1270897 GT:DP:GQ:MIN_DP:PL 0:42:99:42:0,1105 +chrX 1270898 . G A, 404.04 . AS_QUALapprox=|414|0;AS_VarDP=12|22|0;BaseQRankSum=3.127;DP=40;MQRankSum=3.606;QUALapprox=414;RAW_GT_COUNT=0,0,1;RAW_MQandDP=128693,40;ReadPosRankSum=-1.984;VarDP=34 GT:AD:DP:GQ:PL:SB 1:12,22,0:34:99:414,0,754:4,8,10,12 +chrX 1270899 . G . . END=1271196 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,296 +chrX 1271197 . G T, 527.04 . AS_QUALapprox=|537|0;AS_VarDP=14|37|0;BaseQRankSum=-0.936;DP=54;MQRankSum=0.784;QUALapprox=537;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190954,54;ReadPosRankSum=0.475;VarDP=51 GT:AD:DP:GQ:PL:SB 1:14,37,0:51:99:537,0,1166:9,5,20,17 +chrX 1271198 . C . . END=1271331 GT:DP:GQ:MIN_DP:PL 0:40:99:40:0,712 +chrX 1271332 . AT A, 182.01 . AS_QUALapprox=|192|0;AS_VarDP=0|10|0;DP=26;QUALapprox=192;RAW_GT_COUNT=0,0,1;RAW_MQandDP=88426,26;VarDP=10 GT:AD:DP:GQ:PL:SB 1:0,10,0:10:99:192,0,192:0,0,3,7 +chrX 1271334 . T . . END=1271408 GT:DP:GQ:MIN_DP:PL 0:17:99:17:0,342 +chrX 1271409 . C T, 675.04 . AS_QUALapprox=|685|0;AS_VarDP=0|20|0;DP=21;QUALapprox=685;RAW_GT_COUNT=0,0,1;RAW_MQandDP=71150,21;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:685,0,685:0,0,8,12 +chrX 1271410 . G . . END=1271525 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,125 +chrX 1271526 . A AT, 499.01 . AS_QUALapprox=|509|0;AS_VarDP=22|32|0;BaseQRankSum=-0.404;DP=59;MQRankSum=-1.441;QUALapprox=509;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208739,59;ReadPosRankSum=1.497;VarDP=54 GT:AD:DP:GQ:PL:SB 1:22,32,0:54:99:509,0,1410:10,12,20,12 +chrX 1271527 . T . . END=1271541 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1752 +chrX 1271542 . T C, 659.04 . AS_QUALapprox=|669|0;AS_VarDP=22|36|0;BaseQRankSum=1.409;DP=59;MQRankSum=-1.357;QUALapprox=669;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208739,59;ReadPosRankSum=1.281;VarDP=58 GT:AD:DP:GQ:PL:SB 1:22,36,0:58:99:669,0,1599:13,9,23,13 +chrX 1271543 . A . . END=1271546 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,1738 +chrX 1271547 . T C, 712.04 . AS_QUALapprox=|722|0;AS_VarDP=21|37|0;BaseQRankSum=-0.953;DP=63;MQRankSum=-1.307;QUALapprox=722;RAW_GT_COUNT=0,0,1;RAW_MQandDP=222564,63;ReadPosRankSum=0.704;VarDP=58 GT:AD:DP:GQ:PL:SB 1:21,37,0:58:99:722,0,1612:14,7,23,14 +chrX 1271548 . G . . END=1271576 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1800 +chrX 1271577 . T C, 1059.04 . AS_QUALapprox=|1069|0;AS_VarDP=25|49|0;BaseQRankSum=-0.909;DP=77;MQRankSum=-1.444;QUALapprox=1069;RAW_GT_COUNT=0,0,1;RAW_MQandDP=273180,77;ReadPosRankSum=-0.583;VarDP=74 GT:AD:DP:GQ:PL:SB 1:25,49,0:74:99:1069,0,2193:17,8,28,21 +chrX 1271578 . G A, 1059.04 . AS_QUALapprox=|1069|0;AS_VarDP=25|49|0;BaseQRankSum=-0.201;DP=77;MQRankSum=-1.444;QUALapprox=1069;RAW_GT_COUNT=0,0,1;RAW_MQandDP=273180,77;ReadPosRankSum=-0.529;VarDP=74 GT:AD:DP:GQ:PL:SB 1:25,49,0:74:99:1069,0,2193:17,8,28,21 +chrX 1271579 . C . . END=1271795 GT:DP:GQ:MIN_DP:PL 0:79:99:79:0,1800 +chrX 1271796 . C T, 502.04 . AS_QUALapprox=|512|0;AS_VarDP=29|44|0;BaseQRankSum=-0.342;DP=74;MQRankSum=0.000;QUALapprox=512;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;ReadPosRankSum=-0.863;VarDP=73 GT:AD:DP:GQ:PL:SB 1:29,44,0:73:99:512,0,1449:13,16,20,24 +chrX 1271797 . A . . END=1272184 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1482 +chrX 1272185 . C T, 645.04 . AS_QUALapprox=|655|0;AS_VarDP=20|40|0;BaseQRankSum=-0.385;DP=62;MQRankSum=-0.672;QUALapprox=655;RAW_GT_COUNT=0,0,1;RAW_MQandDP=222625,62;ReadPosRankSum=-0.957;VarDP=60 GT:AD:DP:GQ:PL:SB 1:20,40,0:60:99:655,0,1280:7,13,23,17 +chrX 1272186 . T . . END=1272354 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1661 +chrX 1272355 . G GA, 125.01 . AS_QUALapprox=|135|0;AS_VarDP=23|27|0;BaseQRankSum=0.107;DP=55;MQRankSum=0.000;QUALapprox=135;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;ReadPosRankSum=0.243;VarDP=50 GT:AD:DP:GQ:PL:SB 1:23,27,0:50:99:135,0,953:11,12,9,18 +chrX 1272356 . A . . END=1272380 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1557 +chrX 1272381 . C A,CA, 97.01 . AS_QUALapprox=|0|107|0;AS_VarDP=20|3|22|0;BaseQRankSum=-3.026;DP=58;MQRankSum=0.000;QUALapprox=107;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;ReadPosRankSum=-0.377;VarDP=45 GT:AD:DP:GQ:PL:SB 2:20,3,22,0:45:99:107,854,0,793:12,8,5,20 +chrX 1272382 . A . . END=1272451 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1593 +chrX 1272452 . C A, 7 . AS_QUALapprox=|17|0;AS_VarDP=29|26|0;BaseQRankSum=3.082;DP=56;MQRankSum=0.983;QUALapprox=17;RAW_GT_COUNT=0,0,1;RAW_MQandDP=200704,56;ReadPosRankSum=1.147;VarDP=55 GT:AD:DP:GQ:PL:SB 1:29,26,0:55:17:17,0,904:17,12,12,14 +chrX 1272453 . G . . END=1272473 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1726 +chrX 1272474 . CTTTAT C, 2248.01 . AS_QUALapprox=|2258|0;AS_VarDP=0|52|0;DP=67;QUALapprox=2258;RAW_GT_COUNT=0,0,1;RAW_MQandDP=239729,67;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:2258,0,2258:0,0,29,23 +chrX 1272480 . T . . END=1273038 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,126 +chrX 1273039 . C T, 323.04 . AS_QUALapprox=|333|0;AS_VarDP=21|31|0;BaseQRankSum=-0.763;DP=54;MQRankSum=-1.147;QUALapprox=333;RAW_GT_COUNT=0,0,1;RAW_MQandDP=191009,54;ReadPosRankSum=-0.187;VarDP=52 GT:AD:DP:GQ:PL:SB 1:21,31,0:52:99:333,0,1033:12,9,18,13 +chrX 1273040 . G . . END=1273450 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,158 +chrX 1273451 . G A, 234.04 . AS_QUALapprox=|244|0;AS_VarDP=33|39|0;BaseQRankSum=2.174;DP=72;MQRankSum=1.115;QUALapprox=244;RAW_GT_COUNT=0,0,1;RAW_MQandDP=256689,72;ReadPosRankSum=1.187;VarDP=72 GT:AD:DP:GQ:PL:SB 1:33,39,0:72:99:244,0,1657:13,20,20,19 +chrX 1273452 . T . . END=1273463 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1800 +chrX 1273464 . G A, 283.04 . AS_QUALapprox=|293|0;AS_VarDP=29|37|0;BaseQRankSum=0.617;DP=67;MQRankSum=1.160;QUALapprox=293;RAW_GT_COUNT=0,0,1;RAW_MQandDP=238689,67;ReadPosRankSum=1.650;VarDP=66 GT:AD:DP:GQ:PL:SB 1:29,37,0:66:99:293,0,1587:10,19,20,17 +chrX 1273465 . C . . END=1273752 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,391 +chrX 1273753 . T TG, 298.01 . AS_QUALapprox=|308|0;AS_VarDP=18|25|0;BaseQRankSum=-1.401;DP=46;MQRankSum=0.948;QUALapprox=308;RAW_GT_COUNT=0,0,1;RAW_MQandDP=156818,46;ReadPosRankSum=-0.547;VarDP=43 GT:AD:DP:GQ:PL:SB 1:18,25,0:43:99:308,0,1069:7,11,12,13 +chrX 1273754 . T . . END=1273758 GT:DP:GQ:MIN_DP:PL 0:41:99:41:0,1315 +chrX 1273759 . T G, 404.04 . AS_QUALapprox=|414|0;AS_VarDP=16|26|0;BaseQRankSum=-1.671;DP=45;MQRankSum=1.102;QUALapprox=414;RAW_GT_COUNT=0,0,1;RAW_MQandDP=153218,45;ReadPosRankSum=-0.594;VarDP=42 GT:AD:DP:GQ:PL:SB 1:16,26,0:42:99:414,0,1114:7,9,13,13 +chrX 1273760 . T . . END=1273766 GT:DP:GQ:MIN_DP:PL 0:37:99:37:0,1201 +chrX 1273767 . A T, 371.04 . AS_QUALapprox=|381|0;AS_VarDP=15|23|0;BaseQRankSum=3.721;DP=40;MQRankSum=1.054;QUALapprox=381;RAW_GT_COUNT=0,0,1;RAW_MQandDP=138034,40;ReadPosRankSum=-0.329;VarDP=38 GT:AD:DP:GQ:PL:SB 1:15,23,0:38:99:381,0,1035:6,9,12,11 +chrX 1273768 . T . . END=1273769 GT:DP:GQ:MIN_DP:PL 0:38:99:38:0,1261 +chrX 1273770 . T TG, 371.01 . AS_QUALapprox=|381|0;AS_VarDP=15|23|0;BaseQRankSum=-0.590;DP=40;MQRankSum=1.054;QUALapprox=381;RAW_GT_COUNT=0,0,1;RAW_MQandDP=138034,40;ReadPosRankSum=0.344;VarDP=38 GT:AD:DP:GQ:PL:SB 1:15,23,0:38:99:381,0,1035:6,9,12,11 +chrX 1273771 . T . . END=1273828 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,988 +chrX 1273829 . G A, 1266.04 . AS_QUALapprox=|1276|0;AS_VarDP=0|38|0;DP=40;QUALapprox=1276;RAW_GT_COUNT=0,0,1;RAW_MQandDP=143425,40;VarDP=38 GT:AD:DP:GQ:PL:SB 1:0,38,0:38:99:1276,0,1276:0,0,23,15 +chrX 1273830 . C . . END=1273857 GT:DP:GQ:MIN_DP:PL 0:40:99:40:0,1162 +chrX 1273858 . G A, 99.04 . AS_QUALapprox=|109|0;AS_VarDP=20|23|0;BaseQRankSum=0.919;DP=47;MQRankSum=0.000;QUALapprox=109;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;ReadPosRankSum=-0.548;VarDP=43 GT:AD:DP:GQ:PL:SB 1:20,23,0:43:99:109,0,754:12,8,15,8 +chrX 1273859 . A . . END=1274562 GT:DP:GQ:MIN_DP:PL 0:45:34:44:0,34 +chrX 1274563 . G A, 608.04 . AS_QUALapprox=|618|0;AS_VarDP=0|16|0;DP=38;QUALapprox=618;RAW_GT_COUNT=0,0,1;RAW_MQandDP=103960,38;VarDP=16 GT:AD:DP:GQ:PL:SB 1:0,16,0:16:99:618,0,618:0,0,2,14 +chrX 1274564 . A . . END=1274597 GT:DP:GQ:MIN_DP:PL 0:17:75:17:0,75 +chrX 1274598 . T G, 80.04 . AS_QUALapprox=|90|0;AS_VarDP=8|10|0;BaseQRankSum=-0.479;DP=38;MQRankSum=-1.573;QUALapprox=90;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111894,38;ReadPosRankSum=2.310;VarDP=18 GT:AD:DP:GQ:PL:SB 1:8,10,0:18:90:90,0,450:7,1,0,10 +chrX 1274599 . A . . END=1274599 GT:DP:GQ:MIN_DP:PL 0:17:99:17:0,571 +chrX 1274600 . T C, 35.04 . AS_QUALapprox=|45|0;AS_VarDP=9|10|0;BaseQRankSum=-1.611;DP=35;MQRankSum=-1.671;QUALapprox=45;RAW_GT_COUNT=0,0,1;RAW_MQandDP=110664,35;ReadPosRankSum=2.044;VarDP=19 GT:AD:DP:GQ:PL:SB 1:9,10,0:19:45:45,0,450:7,2,0,10 +chrX 1274601 . A G, 35.04 . AS_QUALapprox=|45|0;AS_VarDP=9|10|0;BaseQRankSum=1.611;DP=36;MQRankSum=-1.671;QUALapprox=45;RAW_GT_COUNT=0,0,1;RAW_MQandDP=114264,36;ReadPosRankSum=2.166;VarDP=19 GT:AD:DP:GQ:PL:SB 1:9,10,0:19:45:45,0,450:7,2,0,10 +chrX 1274602 . G . . END=1274604 GT:DP:GQ:MIN_DP:PL 0:19:99:19:0,561 +chrX 1274605 . G T, 35.04 . AS_QUALapprox=|45|0;AS_VarDP=9|10|0;BaseQRankSum=0.531;DP=38;MQRankSum=-1.671;QUALapprox=45;RAW_GT_COUNT=0,0,1;RAW_MQandDP=121464,38;ReadPosRankSum=1.022;VarDP=19 GT:AD:DP:GQ:PL:SB 1:9,10,0:19:45:45,0,450:7,2,0,10 +chrX 1274606 . T . . END=1274610 GT:DP:GQ:MIN_DP:PL 0:19:99:19:0,606 +chrX 1274611 . C . . END=1274611 GT:DP:GQ:MIN_DP:PL 0:40:0:40:0,0 +chrX 1274612 . A . . END=1274905 GT:DP:GQ:MIN_DP:PL 0:19:29:18:0,29 +chrX 1274906 . A G, 1592.04 . AS_QUALapprox=|1602|0;AS_VarDP=0|52|0;DP=55;QUALapprox=1602;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:1602,0,1602:0,0,24,28 +chrX 1274907 . T . . END=1275606 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,486 +chrX 1275607 . G A, 1784.04 . AS_QUALapprox=|1794|0;AS_VarDP=0|47|0;DP=48;QUALapprox=1794;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=47 GT:AD:DP:GQ:PL:SB 1:0,47,0:47:99:1794,0,1794:0,0,36,11 +chrX 1275608 . G . . END=1276168 GT:DP:GQ:MIN_DP:PL 0:51:43:47:0,43 +chrX 1276169 . TTTTG T, 1951.01 . AS_QUALapprox=|1961|0;AS_VarDP=0|44|0;DP=59;QUALapprox=1961;RAW_GT_COUNT=0,0,1;RAW_MQandDP=211825,59;VarDP=44 GT:AD:DP:GQ:PL:SB 1:0,44,0:44:99:1961,0,1961:0,0,23,21 +chrX 1276174 . T . . END=1276359 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1756 +chrX 1276360 . ATATTTATT A,ATATTTATTTATTTATT, 1236.01 . AS_QUALapprox=|1151|1246|0;AS_VarDP=0|27|28|0;DP=68;QUALapprox=1246;RAW_GT_COUNT=0,0,1;RAW_MQandDP=242800,68;VarDP=55 GT:AD:DP:GQ:PL:SB 2:0,27,28,0:55:95:1246,95,0,1269:0,0,28,27 +chrX 1276369 . T . . END=1277117 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1409 +chrX 1277118 . T TA, 405.01 . AS_QUALapprox=|415|0;AS_VarDP=21|32|0;BaseQRankSum=0.645;DP=59;MQRankSum=1.273;QUALapprox=415;RAW_GT_COUNT=0,0,1;RAW_MQandDP=211716,59;ReadPosRankSum=-0.600;VarDP=53 GT:AD:DP:GQ:PL:SB 1:21,32,0:53:99:415,0,1197:9,12,16,16 +chrX 1277119 . A . . END=1277955 GT:DP:GQ:MIN_DP:PL 0:57:56:45:0,56 +chrX 1277956 . A G, 273.04 . AS_QUALapprox=|283|0;AS_VarDP=14|22|0;BaseQRankSum=0.162;DP=38;MQRankSum=-0.741;QUALapprox=283;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133641,38;ReadPosRankSum=-0.195;VarDP=36 GT:AD:DP:GQ:PL:SB 1:14,22,0:36:99:283,0,735:7,7,12,10 +chrX 1277957 . A . . END=1278354 GT:DP:GQ:MIN_DP:PL 0:85:99:85:0,660 +chrX 1278355 . C T, 1335.04 . AS_QUALapprox=|1345|0;AS_VarDP=25|66|0;BaseQRankSum=1.013;DP=97;MQRankSum=-1.674;QUALapprox=1345;RAW_GT_COUNT=0,0,1;RAW_MQandDP=337582,97;ReadPosRankSum=0.756;VarDP=91 GT:AD:DP:GQ:PL:SB 1:25,66,0:91:99:1345,0,2108:15,10,25,41 +chrX 1278356 . G . . END=1278411 GT:DP:GQ:MIN_DP:PL 0:86:99:86:0,1800 +chrX 1278412 . T C, 689.04 . AS_QUALapprox=|699|0;AS_VarDP=28|52|0;BaseQRankSum=-0.697;DP=85;MQRankSum=-2.414;QUALapprox=699;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259894,85;ReadPosRankSum=0.091;VarDP=80 GT:AD:DP:GQ:PL:SB 1:28,52,0:80:99:699,0,1567:18,10,22,30 +chrX 1278413 . G . . END=1278480 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1800 +chrX 1278481 . T G, 428.04 . AS_QUALapprox=|438|0;AS_VarDP=20|36|0;BaseQRankSum=-0.758;DP=59;MQRankSum=-5.415;QUALapprox=438;RAW_GT_COUNT=0,0,1;RAW_MQandDP=142163,59;ReadPosRankSum=-0.291;VarDP=56 GT:AD:DP:GQ:PL:SB 1:20,36,0:56:99:438,0,1090:10,10,15,21 +chrX 1278482 . T . . END=1278697 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,549 +chrX 1278698 . A T, 623.04 . AS_QUALapprox=|633|0;AS_VarDP=0|20|0;DP=23;QUALapprox=633;RAW_GT_COUNT=0,0,1;RAW_MQandDP=79994,23;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:633,0,633:0,0,11,9 +chrX 1278699 . T . . END=1279129 GT:DP:GQ:MIN_DP:PL 0:39:54:28:0,54 +chrX 1279130 . T C, 1944.04 . AS_QUALapprox=|1954|0;AS_VarDP=0|61|0;DP=61;QUALapprox=1954;RAW_GT_COUNT=0,0,1;RAW_MQandDP=215632,61;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,61,0:61:99:1954,0,1954:0,0,37,24 +chrX 1279131 . A . . END=1279362 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,506 +chrX 1279363 . A T, 3.21 . AS_QUALapprox=|13|0;AS_VarDP=24|24|0;BaseQRankSum=-2.002;DP=61;MQRankSum=0.000;QUALapprox=13;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;ReadPosRankSum=0.106;VarDP=48 GT:AD:DP:GQ:PL:SB 1:24,24,0:48:13:13,0,1066:11,13,11,13 +chrX 1279364 . A . . END=1279364 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1800 +chrX 1279365 . T A,TTAA, 93.04 . AS_QUALapprox=|103|0|0;AS_VarDP=24|24|0|0;BaseQRankSum=-1.033;DP=62;MQRankSum=0.000;QUALapprox=103;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;ReadPosRankSum=0.206;VarDP=48 GT:AD:DP:GQ:PL:SB 1:24,24,0,0:48:99:103,0,1519,1337:11,13,11,13 +chrX 1279366 . T . . END=1279785 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,357 +chrX 1279786 . T . . END=1279786 GT:DP:GQ:MIN_DP:PL 0:63:0:63:0,0 +chrX 1279787 . T . . END=1280487 GT:DP:GQ:MIN_DP:PL 0:59:71:59:0,71 +chrX 1280488 . A G,AAAG, 1242.04 . AS_QUALapprox=|1252|129|0;AS_VarDP=0|23|1|0;DP=45;QUALapprox=1252;RAW_GT_COUNT=0,0,1;RAW_MQandDP=157429,45;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,23,1,0:24:99:1252,0,1123,1199:0,0,11,13 +chrX 1280489 . A . . END=1280545 GT:DP:GQ:MIN_DP:PL 0:41:99:41:0,1225 +chrX 1280546 . G A, 1424.04 . AS_QUALapprox=|1434|0;AS_VarDP=0|44|0;DP=47;QUALapprox=1434;RAW_GT_COUNT=0,0,1;RAW_MQandDP=167925,47;VarDP=44 GT:AD:DP:GQ:PL:SB 1:0,44,0:44:99:1434,0,1434:0,0,29,15 +chrX 1280547 . T . . END=1280872 GT:DP:GQ:MIN_DP:PL 0:41:99:41:0,450 +chrX 1280873 . T TCC, 160.01 . AS_QUALapprox=|170|0;AS_VarDP=3|8|0;BaseQRankSum=-0.660;DP=39;MQRankSum=0.301;QUALapprox=170;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122381,39;ReadPosRankSum=-0.191;VarDP=11 GT:AD:DP:GQ:PL:SB 1:3,8,0:11:99:170,0,242:3,0,0,8 +chrX 1280874 . T TCTCCTGCTCCTTCTCCTCCTCCTC,TTCTCCTCCTCCTTCTCCTCCTCCTC,TTCTCCTGCTCCTTCTCCTCCTCCTC, 37.01 . AS_QUALapprox=|0|0|47|0;AS_VarDP=3|0|1|7|0;BaseQRankSum=-0.084;DP=39;MQRankSum=0.301;QUALapprox=47;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122381,39;ReadPosRankSum=-0.183;VarDP=11 GT:AD:DP:GQ:PL:SB 3:3,0,1,7,0:11:47:47,1116,283,0,495:3,0,0,8 +chrX 1280875 . C . . END=1281005 GT:DP:GQ:MIN_DP:PL 0:15:99:15:0,203 +chrX 1281006 . C T, 78.04 . AS_QUALapprox=|88|0;AS_VarDP=6|8|0;BaseQRankSum=1.135;DP=14;MQRankSum=-0.061;QUALapprox=88;RAW_GT_COUNT=0,0,1;RAW_MQandDP=37680,14;ReadPosRankSum=-2.327;VarDP=14 GT:AD:DP:GQ:PL:SB 1:6,8,0:14:88:88,0,203:4,2,2,6 +chrX 1281007 . C . . END=1281036 GT:DP:GQ:MIN_DP:PL 0:22:99:22:0,315 +chrX 1281037 . A . . END=1281037 GT:DP:GQ:MIN_DP:PL 0:12:0:12:0,0 +chrX 1281038 . T . . END=1281047 GT:DP:GQ:MIN_DP:PL 0:12:99:12:0,102 +chrX 1281048 . G . . END=1281048 GT:DP:GQ:MIN_DP:PL 0:7:0:7:0,0 +chrX 1281049 . C . . END=1281539 GT:DP:GQ:MIN_DP:PL 0:10:20:10:0,20 +chrX 1281540 . C T, 1624.04 . AS_QUALapprox=|1634|0;AS_VarDP=2|50|0;BaseQRankSum=2.998;DP=61;MQRankSum=0.000;QUALapprox=1634;RAW_GT_COUNT=0,0,1;RAW_MQandDP=217849,61;ReadPosRankSum=1.762;VarDP=52 GT:AD:DP:GQ:PL:SB 1:2,50,0:52:99:1634,0,1653:1,1,23,27 +chrX 1281541 . C . . END=1282030 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,868 +chrX 1282031 . T TA, 657.01 . AS_QUALapprox=|667|0;AS_VarDP=2|37|0;BaseQRankSum=0.927;DP=58;MQRankSum=-0.116;QUALapprox=667;RAW_GT_COUNT=0,0,1;RAW_MQandDP=197649,58;ReadPosRankSum=-0.350;VarDP=39 GT:AD:DP:GQ:PL:SB 1:2,37,0:39:99:667,0,695:1,1,28,9 +chrX 1282032 . A . . END=1283122 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1503 +chrX 1283123 . GTTCC G, 1416.01 . AS_QUALapprox=|1426|0;AS_VarDP=0|34|0;DP=47;QUALapprox=1426;RAW_GT_COUNT=0,0,1;RAW_MQandDP=166154,47;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1426,0,1426:0,0,11,23 +chrX 1283128 . T . . END=1283166 GT:DP:GQ:MIN_DP:PL 0:43:99:43:0,1229 +chrX 1283167 . GTTCC G, 1318.01 . AS_QUALapprox=|1328|0;AS_VarDP=0|31|0;DP=45;QUALapprox=1328;RAW_GT_COUNT=0,0,1;RAW_MQandDP=156505,45;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1328,0,1328:0,0,11,20 +chrX 1283172 . T . . END=1284118 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,911 +chrX 1284119 . T C, 1949.04 . AS_QUALapprox=|1959|0;AS_VarDP=0|62|0;DP=65;QUALapprox=1959;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:1959,0,1959:0,0,25,37 +chrX 1284120 . G . . END=1284188 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,765 +chrX 1284189 . G C, 2239.04 . AS_QUALapprox=|2249|0;AS_VarDP=0|51|0;DP=52;QUALapprox=2249;RAW_GT_COUNT=0,0,1;RAW_MQandDP=177121,52;VarDP=51 GT:AD:DP:GQ:PL:SB 1:0,51,0:51:99:2249,0,2249:0,0,28,23 +chrX 1284190 . T . . END=1284194 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,810 +chrX 1284195 . CTTTT C, 2294.01 . AS_QUALapprox=|2304|0;AS_VarDP=0|53|0;DP=53;QUALapprox=2304;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180721,53;VarDP=53 GT:AD:DP:GQ:PL:SB 1:0,53,0:53:99:2304,0,2304:0,0,28,25 +chrX 1284200 . T . . END=1284200 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,900 +chrX 1284201 . T C, 2224.04 . AS_QUALapprox=|2234|0;AS_VarDP=0|51|0;DP=57;QUALapprox=2234;RAW_GT_COUNT=0,0,1;RAW_MQandDP=195121,57;VarDP=51 GT:AD:DP:GQ:PL:SB 1:0,51,0:51:99:2234,0,2234:0,0,28,23 +chrX 1284202 . T . . END=1284272 GT:DP:GQ:MIN_DP:PL 0:43:99:43:0,977 +chrX 1284273 . G A, 1044.04 . AS_QUALapprox=|1054|0;AS_VarDP=6|38|0;BaseQRankSum=1.956;DP=49;MQRankSum=0.608;QUALapprox=1054;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151152,49;ReadPosRankSum=1.163;VarDP=44 GT:AD:DP:GQ:PL:SB 1:6,38,0:44:99:1054,0,1222:2,4,11,27 +chrX 1284274 . G . . END=1284350 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1306 +chrX 1284351 . C . . END=1284351 GT:DP:GQ:MIN_DP:PL 0:64:0:64:0,0 +chrX 1284352 . A . . END=1284613 GT:DP:GQ:MIN_DP:PL 0:75:99:75:0,150 +chrX 1284614 . A . . END=1284614 GT:DP:GQ:MIN_DP:PL 0:73:0:73:0,0 +chrX 1284615 . A . . END=1284625 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1698 +chrX 1284626 . C . . END=1284626 GT:DP:GQ:MIN_DP:PL 0:60:0:60:0,0 +chrX 1284627 . G . . END=1284703 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,758 +chrX 1284704 . T . . END=1284704 GT:DP:GQ:MIN_DP:PL 0:48:0:48:0,0 +chrX 1284705 . C . . END=1284737 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,1401 +chrX 1284738 . C . . END=1284738 GT:DP:GQ:MIN_DP:PL 0:54:0:54:0,0 +chrX 1284739 . A . . END=1284961 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1373 +chrX 1284962 . T C, 1453.04 . AS_QUALapprox=|1463|0;AS_VarDP=0|48|0;DP=48;QUALapprox=1463;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=48 GT:AD:DP:GQ:PL:SB 1:0,48,0:48:99:1463,0,1463:0,0,17,31 +chrX 1284963 . G . . END=1285063 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,1334 +chrX 1285064 . A T, 2202.04 . AS_QUALapprox=|2212|0;AS_VarDP=0|51|0;DP=53;QUALapprox=2212;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=51 GT:AD:DP:GQ:PL:SB 1:0,51,0:51:99:2212,0,2212:0,0,34,17 +chrX 1285065 . A T, 2202.04 . AS_QUALapprox=|2212|0;AS_VarDP=0|51|0;DP=53;QUALapprox=2212;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=51 GT:AD:DP:GQ:PL:SB 1:0,51,0:51:99:2212,0,2212:0,0,34,17 +chrX 1285066 . A . . END=1285119 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1567 +chrX 1285120 . G C, 2422.04 . AS_QUALapprox=|2432|0;AS_VarDP=0|74|0;DP=76;QUALapprox=2432;RAW_GT_COUNT=0,0,1;RAW_MQandDP=273600,76;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,74,0:74:99:2432,0,2432:0,0,54,20 +chrX 1285121 . A . . END=1285167 GT:DP:GQ:MIN_DP:PL 0:74:99:74:0,1800 +chrX 1285168 . T A, 2386.04 . AS_QUALapprox=|2396|0;AS_VarDP=0|77|0;DP=78;QUALapprox=2396;RAW_GT_COUNT=0,0,1;RAW_MQandDP=280800,78;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,77,0:77:99:2396,0,2396:0,0,44,33 +chrX 1285169 . G . . END=1285386 GT:DP:GQ:MIN_DP:PL 0:73:99:73:0,1767 +chrX 1285387 . G A, 1693.04 . AS_QUALapprox=|1703|0;AS_VarDP=1|53|0;BaseQRankSum=-0.429;DP=57;MQRankSum=0.000;QUALapprox=1703;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;ReadPosRankSum=1.252;VarDP=54 GT:AD:DP:GQ:PL:SB 1:1,53,0:54:99:1703,0,1738:1,0,17,36 +chrX 1285388 . G . . END=1285431 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,1405 +chrX 1285432 . G A, 1608.04 . AS_QUALapprox=|1618|0;AS_VarDP=2|50|0;BaseQRankSum=1.726;DP=52;MQRankSum=-0.100;QUALapprox=1618;RAW_GT_COUNT=0,0,1;RAW_MQandDP=186625,52;ReadPosRankSum=0.238;VarDP=52 GT:AD:DP:GQ:PL:SB 1:2,50,0:52:99:1618,0,1663:0,2,22,28 +chrX 1285433 . C . . END=1285483 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,1430 +chrX 1285484 . G A, 1440.04 . AS_QUALapprox=|1450|0;AS_VarDP=1|43|0;BaseQRankSum=0.000;DP=46;MQRankSum=0.000;QUALapprox=1450;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165025,46;ReadPosRankSum=-1.458;VarDP=44 GT:AD:DP:GQ:PL:SB 1:1,43,0:44:99:1450,0,1485:0,1,20,23 +chrX 1285485 . G . . END=1285627 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1559 +chrX 1285628 . GAGCTTGC G, 1824.01 . AS_QUALapprox=|1834|0;AS_VarDP=0|41|0;DP=47;QUALapprox=1834;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162222,47;VarDP=41 GT:AD:DP:GQ:PL:SB 1:0,41,0:41:99:1834,0,1834:0,0,21,20 +chrX 1285636 . A . . END=1285647 GT:DP:GQ:MIN_DP:PL 0:44:99:44:0,1216 +chrX 1285648 . C G, 2015.04 . AS_QUALapprox=|2025|0;AS_VarDP=0|45|0;DP=45;QUALapprox=2025;RAW_GT_COUNT=0,0,1;RAW_MQandDP=153022,45;VarDP=45 GT:AD:DP:GQ:PL:SB 1:0,45,0:45:99:2025,0,2025:0,0,26,19 +chrX 1285649 . C . . END=1285659 GT:DP:GQ:MIN_DP:PL 0:41:99:41:0,1226 +chrX 1285660 . G C, 1835.04 . AS_QUALapprox=|1845|0;AS_VarDP=0|41|0;DP=42;QUALapprox=1845;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140222,42;VarDP=41 GT:AD:DP:GQ:PL:SB 1:0,41,0:41:99:1845,0,1845:0,0,24,17 +chrX 1285661 . C . . END=1285718 GT:DP:GQ:MIN_DP:PL 0:38:99:38:0,907 +chrX 1285719 . AAAAAAAAAAAAAG A, 1518.01 . AS_QUALapprox=|1528|0;AS_VarDP=3|43|0;BaseQRankSum=1.277;DP=49;MQRankSum=-0.897;QUALapprox=1528;RAW_GT_COUNT=0,0,1;RAW_MQandDP=156424,49;ReadPosRankSum=-1.002;VarDP=46 GT:AD:DP:GQ:PL:SB 1:3,43,0:46:99:1528,0,1582:3,0,22,21 +chrX 1285733 . G . . END=1285938 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1404 +chrX 1285939 . T G, 1985.04 . AS_QUALapprox=|1995|0;AS_VarDP=0|62|0;DP=64;QUALapprox=1995;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:1995,0,1995:0,0,35,27 +chrX 1285940 . C . . END=1286016 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1792 +chrX 1286017 . C A, 2419.04 . AS_QUALapprox=|2429|0;AS_VarDP=1|56|0;BaseQRankSum=2.621;DP=58;MQRankSum=-0.352;QUALapprox=2429;RAW_GT_COUNT=0,0,1;RAW_MQandDP=204040,58;ReadPosRankSum=-1.155;VarDP=57 GT:AD:DP:GQ:PL:SB 1:1,56,0:57:99:2429,0,2438:1,0,26,30 +chrX 1286018 . A . . END=1286037 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1733 +chrX 1286038 . T C, 2510.04 . AS_QUALapprox=|2520|0;AS_VarDP=0|56|0;DP=57;QUALapprox=2520;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198321,57;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,56,0:56:99:2520,0,2520:0,0,27,29 +chrX 1286039 . G . . END=1286042 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,1748 +chrX 1286043 . T C, 2420.04 . AS_QUALapprox=|2430|0;AS_VarDP=0|54|0;DP=55;QUALapprox=2430;RAW_GT_COUNT=0,0,1;RAW_MQandDP=191121,55;VarDP=54 GT:AD:DP:GQ:PL:SB 1:0,54,0:54:99:2430,0,2430:0,0,26,28 +chrX 1286044 . G . . END=1286047 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,1569 +chrX 1286048 . G A, 2240.04 . AS_QUALapprox=|2250|0;AS_VarDP=0|50|0;DP=51;QUALapprox=2250;RAW_GT_COUNT=0,0,1;RAW_MQandDP=174721,51;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,50,0:50:99:2250,0,2250:0,0,24,26 +chrX 1286049 . G . . END=1286070 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,1578 +chrX 1286071 . A G, 2183.04 . AS_QUALapprox=|2193|0;AS_VarDP=0|51|0;DP=52;QUALapprox=2193;RAW_GT_COUNT=0,0,1;RAW_MQandDP=178321,52;VarDP=51 GT:AD:DP:GQ:PL:SB 1:0,51,0:51:99:2193,0,2193:0,0,24,27 +chrX 1286072 . A . . END=1286421 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1505 +chrX 1286422 . A G, 1815.04 . AS_QUALapprox=|1825|0;AS_VarDP=0|57|0;DP=63;QUALapprox=1825;RAW_GT_COUNT=0,0,1;RAW_MQandDP=222800,63;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:1825,0,1825:0,0,31,26 +chrX 1286423 . G . . END=1286569 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1766 +chrX 1286570 . CA C, 1362.01 . AS_QUALapprox=|1372|0;AS_VarDP=0|54|0;DP=66;QUALapprox=1372;RAW_GT_COUNT=0,0,1;RAW_MQandDP=236025,66;VarDP=54 GT:AD:DP:GQ:PL:SB 1:0,54,0:54:99:1372,0,1372:0,0,28,26 +chrX 1286572 . A . . END=1287077 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1304 +chrX 1287078 . T C, 1219.04 . AS_QUALapprox=|1229|0;AS_VarDP=0|40|0;DP=43;QUALapprox=1229;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154800,43;VarDP=40 GT:AD:DP:GQ:PL:SB 1:0,40,0:40:99:1229,0,1229:0,0,21,19 +chrX 1287079 . A . . END=1287206 GT:DP:GQ:MIN_DP:PL 0:40:99:40:0,720 +chrX 1287207 . A G, 263.04 . AS_QUALapprox=|273|0;AS_VarDP=11|18|0;BaseQRankSum=2.342;DP=31;MQRankSum=-0.476;QUALapprox=273;RAW_GT_COUNT=0,0,1;RAW_MQandDP=102095,31;ReadPosRankSum=0.517;VarDP=29 GT:AD:DP:GQ:PL:SB 1:11,18,0:29:99:273,0,626:6,5,5,13 +chrX 1287208 . C . . END=1287300 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,1117 +chrX 1287301 . G C, 134.04 . AS_QUALapprox=|144|0;AS_VarDP=20|24|0;BaseQRankSum=0.283;DP=45;MQRankSum=0.307;QUALapprox=144;RAW_GT_COUNT=0,0,1;RAW_MQandDP=155761,45;ReadPosRankSum=1.179;VarDP=44 GT:AD:DP:GQ:PL:SB 1:20,24,0:44:99:144,0,739:7,13,11,13 +chrX 1287302 . T . . END=1287353 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,1313 +chrX 1287354 . A C, 2447.04 . AS_QUALapprox=|2457|0;AS_VarDP=1|57|0;BaseQRankSum=2.181;DP=59;MQRankSum=4.358;QUALapprox=2457;RAW_GT_COUNT=0,0,1;RAW_MQandDP=207746,59;ReadPosRankSum=0.120;VarDP=58 GT:AD:DP:GQ:PL:SB 1:1,57,0:58:99:2457,0,2476:0,1,24,33 +chrX 1287355 . T . . END=1287360 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1726 +chrX 1287361 . C T, 2377.04 . AS_QUALapprox=|2387|0;AS_VarDP=1|55|0;BaseQRankSum=2.219;DP=57;MQRankSum=4.281;QUALapprox=2387;RAW_GT_COUNT=0,0,1;RAW_MQandDP=200546,57;ReadPosRankSum=0.578;VarDP=56 GT:AD:DP:GQ:PL:SB 1:1,55,0:56:99:2387,0,2406:0,1,24,31 +chrX 1287362 . C . . END=1287652 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,976 +chrX 1287653 . A G, 1203.04 . AS_QUALapprox=|1213|0;AS_VarDP=3|34|0;BaseQRankSum=2.431;DP=40;MQRankSum=-0.270;QUALapprox=1213;RAW_GT_COUNT=0,0,1;RAW_MQandDP=113651,40;ReadPosRankSum=1.587;VarDP=37 GT:AD:DP:GQ:PL:SB 1:3,34,0:37:99:1213,0,1272:1,2,16,18 +chrX 1287654 . G . . END=1287658 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,1110 +chrX 1287659 . A G, 1513.04 . AS_QUALapprox=|1523|0;AS_VarDP=0|36|0;DP=39;QUALapprox=1523;RAW_GT_COUNT=0,0,1;RAW_MQandDP=110051,39;VarDP=36 GT:AD:DP:GQ:PL:SB 1:0,36,0:36:99:1523,0,1523:0,0,17,19 +chrX 1287660 . T . . END=1287662 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,1067 +chrX 1287663 . T C, 108.04 . AS_QUALapprox=|118|0;AS_VarDP=16|17|0;BaseQRankSum=-0.893;DP=36;MQRankSum=-1.106;QUALapprox=118;RAW_GT_COUNT=0,0,1;RAW_MQandDP=101487,36;ReadPosRankSum=2.361;VarDP=33 GT:AD:DP:GQ:PL:SB 1:16,17,0:33:99:118,0,734:8,8,7,10 +chrX 1287664 . G . . END=1287690 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,874 +chrX 1287691 . G A, 501.04 . AS_QUALapprox=|511|0;AS_VarDP=8|19|0;BaseQRankSum=0.529;DP=28;MQRankSum=-0.310;QUALapprox=511;RAW_GT_COUNT=0,0,1;RAW_MQandDP=78314,28;ReadPosRankSum=1.834;VarDP=27 GT:AD:DP:GQ:PL:SB 1:8,19,0:27:99:511,0,845:5,3,9,10 +chrX 1287692 . C . . END=1287695 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,808 +chrX 1287696 . G C, 501.04 . AS_QUALapprox=|511|0;AS_VarDP=8|19|0;BaseQRankSum=1.368;DP=28;MQRankSum=-0.310;QUALapprox=511;RAW_GT_COUNT=0,0,1;RAW_MQandDP=78314,28;ReadPosRankSum=0.858;VarDP=27 GT:AD:DP:GQ:PL:SB 1:8,19,0:27:99:511,0,845:5,3,9,10 +chrX 1287697 . G . . END=1287704 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,759 +chrX 1287705 . G A, 671.04 . AS_QUALapprox=|681|0;AS_VarDP=5|20|0;BaseQRankSum=1.011;DP=26;MQRankSum=0.289;QUALapprox=681;RAW_GT_COUNT=0,0,1;RAW_MQandDP=72410,26;ReadPosRankSum=1.007;VarDP=25 GT:AD:DP:GQ:PL:SB 1:5,20,0:25:99:681,0,880:5,0,10,10 +chrX 1287706 . A . . END=1287884 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,694 +chrX 1287885 . T C, 746.04 . AS_QUALapprox=|756|0;AS_VarDP=0|25|0;DP=28;QUALapprox=756;RAW_GT_COUNT=0,0,1;RAW_MQandDP=96125,28;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:756,0,756:0,0,10,15 +chrX 1287886 . G . . END=1287987 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,501 +chrX 1287988 . T C, 1607.04 . AS_QUALapprox=|1617|0;AS_VarDP=0|51|0;DP=52;QUALapprox=1617;RAW_GT_COUNT=0,0,1;RAW_MQandDP=186274,52;VarDP=51 GT:AD:DP:GQ:PL:SB 1:0,51,0:51:99:1617,0,1617:0,0,19,32 +chrX 1287989 . G . . END=1288207 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,174 +chrX 1288208 . A G, 1442.04 . AS_QUALapprox=|1452|0;AS_VarDP=0|47|0;DP=49;QUALapprox=1452;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176049,49;VarDP=47 GT:AD:DP:GQ:PL:SB 1:0,47,0:47:99:1452,0,1452:0,0,32,15 +chrX 1288209 . T . . END=1288245 GT:DP:GQ:MIN_DP:PL 0:41:99:41:0,1246 +chrX 1288246 . C G, 1188.04 . AS_QUALapprox=|1198|0;AS_VarDP=1|38|0;BaseQRankSum=2.355;DP=41;MQRankSum=0.000;QUALapprox=1198;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147249,41;ReadPosRankSum=0.222;VarDP=39 GT:AD:DP:GQ:PL:SB 1:1,38,0:39:99:1198,0,1208:1,0,29,9 +chrX 1288247 . C . . END=1288436 GT:DP:GQ:MIN_DP:PL 0:58:49:58:0,49 +chrX 1288437 . A G, 2477.04 . AS_QUALapprox=|2487|0;AS_VarDP=0|64|0;DP=68;QUALapprox=2487;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244225,68;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,64,0:64:99:2487,0,2487:0,0,34,30 +chrX 1288438 . C . . END=1288438 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1800 +chrX 1288439 . G A, 50.04 . AS_QUALapprox=|60|0;AS_VarDP=31|33|0;BaseQRankSum=-0.146;DP=66;MQRankSum=-0.938;QUALapprox=60;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237025,66;ReadPosRankSum=-0.034;VarDP=64 GT:AD:DP:GQ:PL:SB 1:31,33,0:64:60:60,0,1067:14,17,20,13 +chrX 1288440 . C . . END=1288902 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1800 +chrX 1288903 . CAT C, 323.01 . AS_QUALapprox=|333|0;AS_VarDP=34|41|0;BaseQRankSum=-1.631;DP=80;MQRankSum=0.000;QUALapprox=333;RAW_GT_COUNT=0,0,1;RAW_MQandDP=288000,80;ReadPosRankSum=0.724;VarDP=75 GT:AD:DP:GQ:PL:SB 1:34,41,0:75:99:333,0,1835:15,19,18,23 +chrX 1288906 . G . . END=1291274 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,187 +chrX 1291275 . CTTT C, 1868.01 . AS_QUALapprox=|1878|0;AS_VarDP=0|43|0;DP=47;QUALapprox=1878;RAW_GT_COUNT=0,0,1;RAW_MQandDP=166756,47;VarDP=43 GT:AD:DP:GQ:PL:SB 1:0,43,0:43:99:1878,0,1878:0,0,19,24 +chrX 1291279 . T . . END=1291298 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,1304 +chrX 1291299 . TTCCC T, 42.01 . AS_QUALapprox=|52|0;AS_VarDP=20|23|0;BaseQRankSum=-0.112;DP=54;MQRankSum=1.119;QUALapprox=52;RAW_GT_COUNT=0,0,1;RAW_MQandDP=191956,54;ReadPosRankSum=0.865;VarDP=43 GT:AD:DP:GQ:PL:SB 1:20,23,0:43:52:52,0,914:9,11,9,14 +chrX 1291304 . T . . END=1291528 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1224 +chrX 1291529 . C T, 25.04 . AS_QUALapprox=|35|0;AS_VarDP=26|28|0;BaseQRankSum=-0.603;DP=55;MQRankSum=0.000;QUALapprox=35;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;ReadPosRankSum=1.472;VarDP=54 GT:AD:DP:GQ:PL:SB 1:26,28,0:54:35:35,0,897:13,13,16,12 +chrX 1291530 . G . . END=1292337 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,322 +chrX 1292338 . C T, 244.04 . AS_QUALapprox=|254|0;AS_VarDP=32|39|0;BaseQRankSum=0.032;DP=74;MQRankSum=0.000;QUALapprox=254;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;ReadPosRankSum=-0.555;VarDP=71 GT:AD:DP:GQ:PL:SB 1:32,39,0:71:99:254,0,1265:18,14,16,23 +chrX 1292339 . G . . END=1292637 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1800 +chrX 1292638 . C T, 417.04 . AS_QUALapprox=|427|0;AS_VarDP=29|41|0;BaseQRankSum=0.918;DP=73;MQRankSum=0.000;QUALapprox=427;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;ReadPosRankSum=-0.519;VarDP=70 GT:AD:DP:GQ:PL:SB 1:29,41,0:70:99:427,0,1415:16,13,24,17 +chrX 1292639 . A . . END=1293220 GT:DP:GQ:MIN_DP:PL 0:69:88:69:0,88 +chrX 1293221 . G GTTTC, 1925.01 . AS_QUALapprox=|1935|0;AS_VarDP=0|43|0;DP=46;QUALapprox=1935;RAW_GT_COUNT=0,0,1;RAW_MQandDP=164601,46;VarDP=43 GT:AD:DP:GQ:PL:SB 1:0,43,0:43:99:1935,0,1935:0,0,24,19 +chrX 1293222 . T . . END=1293270 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,283 +chrX 1293271 . G T, 319.04 . AS_QUALapprox=|329|0;AS_VarDP=26|34|0;BaseQRankSum=-1.014;DP=60;MQRankSum=0.482;QUALapprox=329;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187991,60;ReadPosRankSum=0.739;VarDP=60 GT:AD:DP:GQ:PL:SB 1:26,34,0:60:99:329,0,1499:18,8,16,18 +chrX 1293272 . G . . END=1293280 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1800 +chrX 1293281 . G C, 2680.04 . AS_QUALapprox=|2690|0;AS_VarDP=0|61|0;DP=63;QUALapprox=2690;RAW_GT_COUNT=0,0,1;RAW_MQandDP=188256,63;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,61,0:61:99:2690,0,2690:0,0,35,26 +chrX 1293282 . G . . END=1293363 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,135 +chrX 1293364 . A G, 2476.04 . AS_QUALapprox=|2486|0;AS_VarDP=0|67|0;DP=69;QUALapprox=2486;RAW_GT_COUNT=0,0,1;RAW_MQandDP=178281,69;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,67,0:67:99:2486,0,2486:0,0,32,35 +chrX 1293365 . C . . END=1294008 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,158 +chrX 1294009 . C T, 2.18 . AS_QUALapprox=|12|0;AS_VarDP=6|5|0;BaseQRankSum=0.191;DP=13;MQRankSum=-0.748;QUALapprox=12;RAW_GT_COUNT=0,0,1;RAW_MQandDP=46449,13;ReadPosRankSum=-0.352;VarDP=11 GT:AD:DP:GQ:PL:SB 1:6,5,0:11:12:12,0,137:3,3,2,3 +chrX 1294010 . C . . END=1294012 GT:DP:GQ:MIN_DP:PL 0:12:99:12:0,315 +chrX 1294013 . CACCTGGACCCAGTGTAGACAGGAGAAGACTGCACCACCTCCACCTGGACCGAGTGTAGACAGGAGGAGACCCTGCCCCACCTCT C, 193.01 . AS_QUALapprox=|203|0;AS_VarDP=4|11|0;DP=19;MQRankSum=1.809;QUALapprox=203;RAW_GT_COUNT=0,0,1;RAW_MQandDP=67930,19;VarDP=15 GT:AD:DP:GQ:PL:SB 1:4,11,0:15:99:203,0,324:1,3,4,7 +chrX 1294098 . A . . END=1294563 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1062 +chrX 1294564 . C G, 1732.04 . AS_QUALapprox=|1742|0;AS_VarDP=0|52|0;DP=54;QUALapprox=1742;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:1742,0,1742:0,0,16,36 +chrX 1294565 . G . . END=1294783 GT:DP:GQ:MIN_DP:PL 0:50:35:50:0,35 +chrX 1294784 . C G, 1568.04 . AS_QUALapprox=|1578|0;AS_VarDP=0|48|0;DP=52;QUALapprox=1578;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=48 GT:AD:DP:GQ:PL:SB 1:0,48,0:48:99:1578,0,1578:0,0,31,17 +chrX 1294785 . A . . END=1294921 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,1300 +chrX 1294922 . T C, 2900.04 . AS_QUALapprox=|2910|0;AS_VarDP=0|81|0;DP=83;QUALapprox=2910;RAW_GT_COUNT=0,0,1;RAW_MQandDP=263933,83;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,81,0:81:99:2910,0,2910:0,0,35,46 +chrX 1294923 . T . . END=1294959 GT:DP:GQ:MIN_DP:PL 0:82:99:82:0,1800 +chrX 1294960 . G A, 1042.04 . AS_QUALapprox=|1052|0;AS_VarDP=20|46|0;BaseQRankSum=-0.607;DP=84;MQRankSum=-1.665;QUALapprox=1052;RAW_GT_COUNT=0,0,1;RAW_MQandDP=269882,84;ReadPosRankSum=0.796;VarDP=66 GT:AD:DP:GQ:PL:SB 1:20,46,0:66:99:1052,0,1884:8,12,15,31 +chrX 1294961 . A . . END=1294976 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1780 +chrX 1294977 . G A, 901.04 . AS_QUALapprox=|911|0;AS_VarDP=22|42|0;BaseQRankSum=1.497;DP=66;MQRankSum=-1.465;QUALapprox=911;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234141,66;ReadPosRankSum=0.671;VarDP=64 GT:AD:DP:GQ:PL:SB 1:22,42,0:64:99:911,0,1783:9,13,13,29 +chrX 1294978 . T . . END=1295061 GT:DP:GQ:MIN_DP:PL 0:93:99:93:0,968 +chrX 1295062 . T C, 427.04 . AS_QUALapprox=|437|0;AS_VarDP=16|30|0;BaseQRankSum=0.643;DP=51;MQRankSum=-1.486;QUALapprox=437;RAW_GT_COUNT=0,0,1;RAW_MQandDP=177585,51;ReadPosRankSum=0.277;VarDP=46 GT:AD:DP:GQ:PL:SB 1:16,30,0:46:99:437,0,867:10,6,15,15 +chrX 1295063 . G . . END=1295533 GT:DP:GQ:MIN_DP:PL 0:64:34:54:0,34 +chrX 1295534 . C . . END=1295580 GT:DP:GQ:MIN_DP:PL 0:67:0:67:0,0 +chrX 1295581 . C . . END=1295602 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,900 +chrX 1295603 . A T, 454.04 . AS_QUALapprox=|464|0;AS_VarDP=34|21|0;BaseQRankSum=-0.945;DP=57;MQRankSum=-0.404;QUALapprox=464;RAW_GT_COUNT=0,0,1;RAW_MQandDP=195516,57;ReadPosRankSum=1.174;VarDP=55 GT:AD:DP:GQ:PL:SB 1:34,21,0:55:99:464,0,559:22,12,8,13 +chrX 1295604 . C . . END=1295831 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,927 +chrX 1295832 . C T, 682.04 . AS_QUALapprox=|1121|0;AS_VarDP=0|28|0;DP=30;QUALapprox=1121;RAW_GT_COUNT=0,0,1;RAW_MQandDP=106000,30;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:1121,0,903:0,0,10,7 +chrX 1295833 . T . . END=1295836 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,858 +chrX 1295837 . T C, 205.04 . AS_QUALapprox=|215|0;AS_VarDP=11|16|0;BaseQRankSum=-0.175;DP=28;MQRankSum=-1.140;QUALapprox=215;RAW_GT_COUNT=0,0,1;RAW_MQandDP=98800,28;ReadPosRankSum=2.052;VarDP=27 GT:AD:DP:GQ:PL:SB 1:11,16,0:27:99:215,0,472:7,4,4,3 +chrX 1295838 . C . . END=1295860 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,704 +chrX 1295861 . C T, 69.04 . AS_QUALapprox=|79|0;AS_VarDP=11|13|0;BaseQRankSum=-2.185;DP=24;MQRankSum=0.139;QUALapprox=79;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82341,24;ReadPosRankSum=1.949;VarDP=24 GT:AD:DP:GQ:PL:SB 1:11,13,0:24:79:79,0,434:7,4,4,3 +chrX 1295862 . C . . END=1295912 GT:DP:GQ:MIN_DP:PL 0:25:54:23:0,54 +chrX 1295913 . T C, 917.04 . AS_QUALapprox=|927|0;AS_VarDP=0|30|0;DP=38;QUALapprox=927;RAW_GT_COUNT=0,0,1;RAW_MQandDP=124607,38;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:927,0,1318:0,0,15,15 +chrX 1295914 . G . . END=1296222 GT:DP:GQ:MIN_DP:PL 0:45:89:45:0,89 +chrX 1296223 . G A, 51.04 . AS_QUALapprox=|61|0;AS_VarDP=22|21|0;BaseQRankSum=3.038;DP=45;MQRankSum=0.000;QUALapprox=61;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162000,45;ReadPosRankSum=0.280;VarDP=43 GT:AD:DP:GQ:PL:SB 1:22,21,0:43:61:61,0,730:11,11,11,10 +chrX 1296224 . G . . END=1296449 GT:DP:GQ:MIN_DP:PL 0:9:25:5:0,25 +chrX 1296450 . A . . END=1296532 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1296533 . C . . END=1296552 GT:DP:GQ:MIN_DP:PL 0:2:35:1:0,35 +chrX 1296553 . G . . END=1296553 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 1296554 . T . . END=1296751 GT:DP:GQ:MIN_DP:PL 0:7:25:2:0,25 +chrX 1296752 . T . . END=1296752 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 1296753 . G . . END=1296753 GT:DP:GQ:MIN_DP:PL 0:2:45:2:0,45 +chrX 1296754 . T . . END=1296759 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1296760 . C . . END=1297067 GT:DP:GQ:MIN_DP:PL 0:3:25:1:0,25 +chrX 1297068 . T . . END=1297068 GT:DP:GQ:MIN_DP:PL 0:21:0:21:0,0 +chrX 1297069 . T . . END=1297188 GT:DP:GQ:MIN_DP:PL 0:12:59:12:0,59 +chrX 1297189 . A . . END=1297189 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 1297190 . C . . END=1297239 GT:DP:GQ:MIN_DP:PL 0:2:45:2:0,45 +chrX 1297240 . T . . END=1297240 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 1297241 . C . . END=1297258 GT:DP:GQ:MIN_DP:PL 0:2:70:2:0,70 +chrX 1297259 . A . . END=1297259 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 1297260 . G . . END=1297291 GT:DP:GQ:MIN_DP:PL 0:2:35:1:0,35 +chrX 1297292 . C . . END=1297294 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1297295 . T . . END=1297296 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 1297297 . T . . END=1297297 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1297298 . C . . END=1297300 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1297301 . A . . END=1297302 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1297303 . C . . END=1297304 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 1297305 . A . . END=1297305 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 1297306 . T . . END=1297306 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 1297307 . G . . END=1297307 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1297308 . A . . END=1297309 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1297310 . C . . END=1297479 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1297480 . C . . END=1297600 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1297601 . A . . END=1297601 GT:DP:GQ:MIN_DP:PL 0:6:0:6:0,0 +chrX 1297602 . G . . END=1297701 GT:DP:GQ:MIN_DP:PL 0:7:55:7:0,55 +chrX 1297702 . T . . END=1297702 GT:DP:GQ:MIN_DP:PL 0:4:10:4:0,10 +chrX 1297703 . C . . END=1297965 GT:DP:GQ:MIN_DP:PL 0:15:59:15:0,59 +chrX 1297966 . C . . END=1297966 GT:DP:GQ:MIN_DP:PL 0:3:0:3:0,0 +chrX 1297967 . T . . END=1298114 GT:DP:GQ:MIN_DP:PL 0:7:35:6:0,35 +chrX 1298115 . G . . END=1298139 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1298140 . C . . END=1298141 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 1298142 . T . . END=1298142 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1298143 . C . . END=1298144 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 1298145 . G . . END=1298146 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1298147 . T . . END=1298147 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1298148 . G . . END=1298148 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1298149 . G . . END=1298149 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1298150 . A . . END=1298150 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1298151 . A . . END=1298153 GT:DP:GQ:MIN_DP:PL 0:2:59:2:0,59 +chrX 1298154 . C . . END=1298154 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1298155 . T . . END=1298155 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1298156 . A . . END=1298156 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1298157 . C . . END=1298159 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1298160 . T . . END=1298160 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1298161 . C . . END=1298164 GT:DP:GQ:MIN_DP:PL 0:2:25:1:0,25 +chrX 1298165 . T . . END=1298166 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1298167 . C . . END=1298167 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 1298168 . T . . END=1298168 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 1298169 . C . . END=1298181 GT:DP:GQ:MIN_DP:PL 0:2:25:1:0,25 +chrX 1298182 . C . . END=1298182 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1298183 . T . . END=1298184 GT:DP:GQ:MIN_DP:PL 0:2:70:2:0,70 +chrX 1298185 . T . . END=1298185 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1298186 . C . . END=1298203 GT:DP:GQ:MIN_DP:PL 0:4:99:4:0,104 +chrX 1298204 . T . . END=1298204 GT:DP:GQ:MIN_DP:PL 0:3:0:3:0,0 +chrX 1298205 . G . . END=1298255 GT:DP:GQ:MIN_DP:PL 0:4:35:3:0,35 +chrX 1298256 . T . . END=1298256 GT:DP:GQ:MIN_DP:PL 0:5:0:5:0,0 +chrX 1298257 . C . . END=1298375 GT:DP:GQ:MIN_DP:PL 0:5:25:5:0,25 +chrX 1298376 . A G, 60.04 . AS_QUALapprox=|70|0;AS_VarDP=2|4|0;BaseQRankSum=0.623;DP=6;MQRankSum=0.524;QUALapprox=70;RAW_GT_COUNT=0,0,1;RAW_MQandDP=7579,6;ReadPosRankSum=1.282;VarDP=6 GT:AD:DP:GQ:PL:SB 1:2,4,0:6:70:70,0,104:2,0,4,0 +chrX 1298377 . G . . END=1298399 GT:DP:GQ:MIN_DP:PL 0:13:99:13:0,149 +chrX 1298400 . G . . END=1298400 GT:DP:GQ:MIN_DP:PL 0:13:0:13:0,0 +chrX 1298401 . A . . END=1298409 GT:DP:GQ:MIN_DP:PL 0:14:99:14:0,338 +chrX 1298410 . C . . END=1298410 GT:DP:GQ:MIN_DP:PL 0:12:0:12:0,0 +chrX 1298411 . T . . END=1298614 GT:DP:GQ:MIN_DP:PL 0:19:90:19:0,90 +chrX 1298615 . CG C, 486.04 . AS_QUALapprox=|804|0;AS_VarDP=0|20|0;DP=20;QUALapprox=804;RAW_GT_COUNT=0,0,1;RAW_MQandDP=58605,20;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:804,0,693:0,0,8,8 +chrX 1298617 . ACCCCTACACTCTCCTACCCATGACCCCTGGTGGAACCCTACAGTCCCCTACTCACGACCCCTACACTCTCCTACCCATGACCTCTGGTGGAACCCTACAGTCCCCTACTCACG A,*, 209.04 . AS_QUALapprox=|1112|0|0;AS_VarDP=0|16|12|0;DP=33;QUALapprox=1112;RAW_GT_COUNT=0,0,1;RAW_MQandDP=105405,33;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,16,12,0:28:99:1112,0,180,936:0,0,11,17 +chrX 1298731 . A . . END=1298748 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,405 +chrX 1298749 . CATGACCCCCA C, 1654.01 . AS_QUALapprox=|1664|0;AS_VarDP=0|37|0;DP=38;QUALapprox=1664;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129995,38;VarDP=37 GT:AD:DP:GQ:PL:SB 1:0,37,0:37:99:1664,0,1664:0,0,13,24 +chrX 1298760 . G . . END=1298828 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,945 +chrX 1298829 . A G, 168.04 . AS_QUALapprox=|178|0;AS_VarDP=23|30|0;BaseQRankSum=-1.223;DP=53;MQRankSum=0.000;QUALapprox=178;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;ReadPosRankSum=-0.781;VarDP=53 GT:AD:DP:GQ:PL:SB 1:23,30,0:53:99:178,0,947:9,14,15,15 +chrX 1298830 . C . . END=1299043 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,233 +chrX 1299044 . A G, 2485.04 . AS_QUALapprox=|2495|0;AS_VarDP=0|67|0;DP=68;QUALapprox=2495;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,67,0:67:99:2495,0,2495:0,0,42,25 +chrX 1299045 . G . . END=1299728 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1725 +chrX 1299729 . G C, 2184.04 . AS_QUALapprox=|2194|0;AS_VarDP=0|66|0;DP=67;QUALapprox=2194;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=66 GT:AD:DP:GQ:PL:SB 1:0,66,0:66:99:2194,0,2194:0,0,30,36 +chrX 1299730 . C . . END=1301330 GT:DP:GQ:MIN_DP:PL 0:65:76:65:0,76 +chrX 1301331 . C . . END=1301331 GT:DP:GQ:MIN_DP:PL 0:46:14:46:0,14 +chrX 1301332 . A . . END=1301594 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1628 +chrX 1301595 . CT C, 323.01 . AS_QUALapprox=|333|0;AS_VarDP=5|21|0;BaseQRankSum=-0.334;DP=55;MQRankSum=-0.390;QUALapprox=333;RAW_GT_COUNT=0,0,1;RAW_MQandDP=189057,55;ReadPosRankSum=-0.423;VarDP=26 GT:AD:DP:GQ:PL:SB 1:5,21,0:26:99:333,0,434:3,2,7,14 +chrX 1301597 . T . . END=1301911 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,199 +chrX 1301912 . CTTT C, 171.01 . AS_QUALapprox=|181|0;AS_VarDP=14|17|0;BaseQRankSum=0.376;DP=48;MQRankSum=0.000;QUALapprox=181;RAW_GT_COUNT=0,0,1;RAW_MQandDP=167776,48;ReadPosRankSum=-0.133;VarDP=31 GT:AD:DP:GQ:PL:SB 1:14,17,0:31:99:181,0,649:6,8,9,8 +chrX 1301916 . T . . END=1302019 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1393 +chrX 1302020 . A G, 322.04 . AS_QUALapprox=|332|0;AS_VarDP=24|34|0;BaseQRankSum=-0.278;DP=60;MQRankSum=-0.288;QUALapprox=332;RAW_GT_COUNT=0,0,1;RAW_MQandDP=213651,60;ReadPosRankSum=-1.524;VarDP=58 GT:AD:DP:GQ:PL:SB 1:24,34,0:58:99:332,0,1111:13,11,21,13 +chrX 1302021 . A . . END=1302195 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1532 +chrX 1302196 . G A, 176.04 . AS_QUALapprox=|186|0;AS_VarDP=33|36|0;BaseQRankSum=1.957;DP=73;MQRankSum=0.103;QUALapprox=186;RAW_GT_COUNT=0,0,1;RAW_MQandDP=258025,73;ReadPosRankSum=-1.334;VarDP=69 GT:AD:DP:GQ:PL:SB 1:33,36,0:69:99:186,0,1196:19,14,18,18 +chrX 1302197 . T . . END=1302313 GT:DP:GQ:MIN_DP:PL 0:78:99:78:0,1800 +chrX 1302314 . G C, 163.04 . AS_QUALapprox=|173|0;AS_VarDP=35|42|0;BaseQRankSum=-1.380;DP=81;MQRankSum=0.000;QUALapprox=173;RAW_GT_COUNT=0,0,1;RAW_MQandDP=291600,81;ReadPosRankSum=-1.085;VarDP=77 GT:AD:DP:GQ:PL:SB 1:35,42,0:77:99:173,0,1309:16,19,22,20 +chrX 1302315 . G . . END=1304643 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,551 +chrX 1304644 . GT G, 831.01 . AS_QUALapprox=|841|0;AS_VarDP=16|36|0;BaseQRankSum=-1.927;DP=54;MQRankSum=-0.625;QUALapprox=841;RAW_GT_COUNT=0,0,1;RAW_MQandDP=193825,54;ReadPosRankSum=0.387;VarDP=52 GT:AD:DP:GQ:PL:SB 1:16,36,0:52:99:841,0,1513:7,9,11,25 +chrX 1304646 . T . . END=1304665 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1579 +chrX 1304666 . T G, 807.04 . AS_QUALapprox=|817|0;AS_VarDP=18|37|0;BaseQRankSum=-0.600;DP=56;MQRankSum=-0.968;QUALapprox=817;RAW_GT_COUNT=0,0,1;RAW_MQandDP=200450,56;ReadPosRankSum=-0.332;VarDP=55 GT:AD:DP:GQ:PL:SB 1:18,37,0:55:99:817,0,1566:10,8,14,23 +chrX 1304667 . T . . END=1304916 GT:DP:GQ:MIN_DP:PL 0:52:39:51:0,39 +chrX 1304917 . C G, 1873.04 . AS_QUALapprox=|1883|0;AS_VarDP=0|51|0;DP=55;QUALapprox=1883;RAW_GT_COUNT=0,0,1;RAW_MQandDP=193186,55;VarDP=51 GT:AD:DP:GQ:PL:SB 1:0,51,0:51:99:1883,0,1883:0,0,20,31 +chrX 1304918 . G . . END=1305123 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1509 +chrX 1305124 . G C, 268.04 . AS_QUALapprox=|278|0;AS_VarDP=26|36|0;BaseQRankSum=-0.424;DP=62;MQRankSum=-0.817;QUALapprox=278;RAW_GT_COUNT=0,0,1;RAW_MQandDP=222516,62;ReadPosRankSum=2.033;VarDP=62 GT:AD:DP:GQ:PL:SB 1:26,36,0:62:99:278,0,1111:13,13,19,17 +chrX 1305125 . C . . END=1306854 GT:DP:GQ:MIN_DP:PL 0:56:46:51:0,46 +chrX 1306855 . A G, 522.04 . AS_QUALapprox=|532|0;AS_VarDP=17|31|0;BaseQRankSum=-2.018;DP=48;MQRankSum=0.000;QUALapprox=532;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;ReadPosRankSum=0.210;VarDP=48 GT:AD:DP:GQ:PL:SB 1:17,31,0:48:99:532,0,1277:10,7,15,16 +chrX 1306856 . G . . END=1306861 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,1513 +chrX 1306862 . G GGA, 489.01 . AS_QUALapprox=|499|0;AS_VarDP=18|31|0;BaseQRankSum=-0.519;DP=50;MQRankSum=0.000;QUALapprox=499;RAW_GT_COUNT=0,0,1;RAW_MQandDP=178000,50;ReadPosRankSum=-0.156;VarDP=49 GT:AD:DP:GQ:PL:SB 1:18,31,0:49:99:499,0,1276:11,7,15,16 +chrX 1306863 . G . . END=1306954 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1398 +chrX 1306955 . T G, 1734.04 . AS_QUALapprox=|1744|0;AS_VarDP=1|59|0;BaseQRankSum=1.216;DP=60;MQRankSum=0.000;QUALapprox=1744;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;ReadPosRankSum=-1.242;VarDP=60 GT:AD:DP:GQ:PL:SB 1:1,59,0:60:99:1744,0,1769:0,1,27,32 +chrX 1306956 . A . . END=1307017 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1571 +chrX 1307018 . G A, 110.04 . AS_QUALapprox=|120|0;AS_VarDP=25|27|0;BaseQRankSum=1.838;DP=55;MQRankSum=0.000;QUALapprox=120;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;ReadPosRankSum=-0.082;VarDP=52 GT:AD:DP:GQ:PL:SB 1:25,27,0:52:99:120,0,909:11,14,13,14 +chrX 1307019 . A . . END=1307318 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1670 +chrX 1307319 . T C, 2391.04 . AS_QUALapprox=|2401|0;AS_VarDP=0|62|0;DP=62;QUALapprox=2401;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:2401,0,2401:0,0,37,25 +chrX 1307320 . T . . END=1307343 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1800 +chrX 1307344 . C T, 324.04 . AS_QUALapprox=|334|0;AS_VarDP=27|37|0;BaseQRankSum=0.406;DP=65;MQRankSum=0.000;QUALapprox=334;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;ReadPosRankSum=0.632;VarDP=64 GT:AD:DP:GQ:PL:SB 1:27,37,0:64:99:334,0,1147:13,14,22,15 +chrX 1307345 . C . . END=1307387 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1517 +chrX 1307388 . T C,TC, 546.01 . AS_QUALapprox=|0|556|0;AS_VarDP=16|3|30|0;BaseQRankSum=-0.181;DP=52;MQRankSum=-0.653;QUALapprox=556;RAW_GT_COUNT=0,0,1;RAW_MQandDP=186625,52;ReadPosRankSum=0.213;VarDP=49 GT:AD:DP:GQ:PL:SB 2:16,3,30,0:49:99:556,671,0,1026:5,11,18,15 +chrX 1307389 . C . . END=1307396 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,1429 +chrX 1307397 . G T, 546.04 . AS_QUALapprox=|556|0;AS_VarDP=18|31|0;BaseQRankSum=-0.042;DP=50;MQRankSum=-0.720;QUALapprox=556;RAW_GT_COUNT=0,0,1;RAW_MQandDP=179425,50;ReadPosRankSum=0.712;VarDP=49 GT:AD:DP:GQ:PL:SB 1:18,31,0:49:99:556,0,1336:6,12,14,17 +chrX 1307398 . A . . END=1307521 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,803 +chrX 1307522 . T TCGAC, 530.01 . AS_QUALapprox=|540|0;AS_VarDP=29|42|0;BaseQRankSum=1.760;DP=72;MQRankSum=-0.802;QUALapprox=540;RAW_GT_COUNT=0,0,1;RAW_MQandDP=256041,72;ReadPosRankSum=-1.330;VarDP=71 GT:AD:DP:GQ:PL:SB 1:29,42,0:71:99:540,0,1798:19,10,21,21 +chrX 1307523 . T TGATTAGATGAAGCCCACCATTCTCCTTTATACCTTC, 531.01 . AS_QUALapprox=|541|0;AS_VarDP=29|42|0;BaseQRankSum=1.220;DP=71;MQRankSum=-0.802;QUALapprox=541;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252441,71;ReadPosRankSum=-2.578;VarDP=71 GT:AD:DP:GQ:PL:SB 1:29,42,0:71:99:541,0,1798:19,10,21,21 +chrX 1307524 . G . . END=1307791 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,331 +chrX 1307792 . T C, 282.04 . AS_QUALapprox=|712|0;AS_VarDP=0|16|0;DP=18;QUALapprox=712;RAW_GT_COUNT=0,0,1;RAW_MQandDP=59827,18;VarDP=16 GT:AD:DP:GQ:PL:SB 1:0,16,0:16:99:712,0,491:0,0,1,3 +chrX 1307793 . TTTTAGACCTTTGACTGATTAGATGAGGCCTACCCTTCTCCC *,T,CTTTAGACCTTTGACTGATTAGATGAGGCCTACCCTTCTCCC, 561.07 . AS_QUALapprox=|0|153|1072|0;AS_VarDP=0|0|0|10|0;DP=24;QUALapprox=1072;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75028,24;VarDP=10 GT:AD:DP:GQ:PL:SB 3:0,0,0,10,0:10:99:1072,532,919,0,1072:0,0,4,6 +chrX 1307797 . A *,G, 282.04 . AS_QUALapprox=|0|892|0;AS_VarDP=0|0|6|0;DP=20;QUALapprox=892;RAW_GT_COUNT=0,0,1;RAW_MQandDP=64948,20;VarDP=6 GT:AD:DP:GQ:PL:SB 2:0,0,6,0:6:99:892,262,0,581:0,0,2,4 +chrX 1307804 . T *,C, 387.04 . AS_QUALapprox=|0|397|0;AS_VarDP=0|0|7|0;DP=21;QUALapprox=397;RAW_GT_COUNT=0,0,1;RAW_MQandDP=65524,21;VarDP=7 GT:AD:DP:GQ:PL:SB 2:0,0,7,0:7:99:397,826,0,616:0,0,2,5 +chrX 1307819 . G *,A, 401.04 . AS_QUALapprox=|0|939|0;AS_VarDP=0|0|10|0;DP=21;QUALapprox=939;RAW_GT_COUNT=0,0,1;RAW_MQandDP=64579,21;VarDP=10 GT:AD:DP:GQ:PL:SB 2:0,0,10,0:10:99:939,381,0,663:0,0,4,6 +chrX 1307823 . T *,C, 402.04 . AS_QUALapprox=|0|806|0;AS_VarDP=0|0|10|0;DP=18;QUALapprox=806;RAW_GT_COUNT=0,0,1;RAW_MQandDP=53779,18;VarDP=10 GT:AD:DP:GQ:PL:SB 2:0,0,10,0:10:99:806,382,0,596:0,0,4,6 +chrX 1307824 . AC *,A, 411.04 . AS_QUALapprox=|0|806|0;AS_VarDP=0|0|10|0;DP=18;QUALapprox=806;RAW_GT_COUNT=0,0,1;RAW_MQandDP=53779,18;VarDP=10 GT:AD:DP:GQ:PL:SB 2:0,0,10,0:10:99:806,382,0,596:0,0,4,6 +chrX 1307829 . TC *,T, 412.04 . AS_QUALapprox=|0|717|0;AS_VarDP=0|0|10|0;DP=16;QUALapprox=717;RAW_GT_COUNT=0,0,1;RAW_MQandDP=46579,16;VarDP=10 GT:AD:DP:GQ:PL:SB 2:0,0,10,0:10:99:717,383,0,552:0,0,4,6 +chrX 1307834 . C *,CTT, 403.01 . AS_QUALapprox=|0|717|0;AS_VarDP=0|0|10|0;DP=16;QUALapprox=717;RAW_GT_COUNT=0,0,1;RAW_MQandDP=46579,16;VarDP=10 GT:AD:DP:GQ:PL:SB 2:0,0,10,0:10:99:717,383,0,552:0,0,4,6 +chrX 1307835 . T . . END=1307994 GT:DP:GQ:MIN_DP:PL 0:21:99:21:0,373 +chrX 1307995 . C T, 147.04 . AS_QUALapprox=|157|0;AS_VarDP=15|23|0;BaseQRankSum=-2.699;DP=40;MQRankSum=0.000;QUALapprox=157;RAW_GT_COUNT=0,0,1;RAW_MQandDP=144000,40;ReadPosRankSum=-0.568;VarDP=38 GT:AD:DP:GQ:PL:SB 1:15,23,0:38:99:157,0,679:12,3,14,9 +chrX 1307996 . C . . END=1308188 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1672 +chrX 1308189 . C T, 263.04 . AS_QUALapprox=|273|0;AS_VarDP=27|36|0;BaseQRankSum=-1.072;DP=65;MQRankSum=0.000;QUALapprox=273;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;ReadPosRankSum=-0.424;VarDP=63 GT:AD:DP:GQ:PL:SB 1:27,36,0:63:99:273,0,1191:11,16,15,21 +chrX 1308190 . G . . END=1308712 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,129 +chrX 1308713 . G A, 125.04 . AS_QUALapprox=|135|0;AS_VarDP=34|35|0;BaseQRankSum=2.638;DP=71;MQRankSum=0.000;QUALapprox=135;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;ReadPosRankSum=0.780;VarDP=69 GT:AD:DP:GQ:PL:SB 1:34,35,0:69:99:135,0,1146:22,12,27,8 +chrX 1308714 . G . . END=1308964 GT:DP:GQ:MIN_DP:PL 0:73:99:73:0,1800 +chrX 1308965 . T C, 2096.04 . AS_QUALapprox=|2106|0;AS_VarDP=0|72|0;DP=74;QUALapprox=2106;RAW_GT_COUNT=0,0,1;RAW_MQandDP=263453,74;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,72,0:72:99:2106,0,2106:0,0,31,41 +chrX 1308966 . G . . END=1309182 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1782 +chrX 1309183 . C T, 76.04 . AS_QUALapprox=|86|0;AS_VarDP=26|25|0;BaseQRankSum=2.417;DP=57;MQRankSum=0.000;QUALapprox=86;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;ReadPosRankSum=0.933;VarDP=51 GT:AD:DP:GQ:PL:SB 1:26,25,0:51:86:86,0,784:12,14,15,10 +chrX 1309184 . G . . END=1310365 GT:DP:GQ:MIN_DP:PL 0:65:49:49:0,49 +chrX 1310366 . TA T, 13 . AS_QUALapprox=|23|0;AS_VarDP=23|23|0;BaseQRankSum=0.679;DP=56;MQRankSum=0.000;QUALapprox=23;RAW_GT_COUNT=0,0,1;RAW_MQandDP=199600,56;ReadPosRankSum=-1.297;VarDP=46 GT:AD:DP:GQ:PL:SB 1:23,23,0:46:23:23,0,591:6,17,14,9 +chrX 1310368 . A . . END=1310573 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,153 +chrX 1310574 . A G, 131.04 . AS_QUALapprox=|141|0;AS_VarDP=24|29|0;BaseQRankSum=0.233;DP=56;MQRankSum=1.288;QUALapprox=141;RAW_GT_COUNT=0,0,1;RAW_MQandDP=197204,56;ReadPosRankSum=1.502;VarDP=53 GT:AD:DP:GQ:PL:SB 1:24,29,0:53:99:141,0,914:15,9,11,18 +chrX 1310575 . G . . END=1310640 GT:DP:GQ:MIN_DP:PL 0:41:99:41:0,1142 +chrX 1310641 . G C, 324.04 . AS_QUALapprox=|334|0;AS_VarDP=15|25|0;BaseQRankSum=-0.730;DP=42;MQRankSum=-0.723;QUALapprox=334;RAW_GT_COUNT=0,0,1;RAW_MQandDP=150201,42;ReadPosRankSum=0.910;VarDP=40 GT:AD:DP:GQ:PL:SB 1:15,25,0:40:99:334,0,829:9,6,10,15 +chrX 1310642 . T . . END=1310666 GT:DP:GQ:MIN_DP:PL 0:37:99:37:0,1066 +chrX 1310667 . CAAA C, 59.01 . AS_QUALapprox=|69|0;AS_VarDP=16|16|0;BaseQRankSum=-0.680;DP=44;MQRankSum=0.000;QUALapprox=69;RAW_GT_COUNT=0,0,1;RAW_MQandDP=157401,44;ReadPosRankSum=0.792;VarDP=32 GT:AD:DP:GQ:PL:SB 1:16,16,0:32:69:69,0,694:8,8,7,9 +chrX 1310671 . A . . END=1310857 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1578 +chrX 1310858 . G C, 223.04 . AS_QUALapprox=|233|0;AS_VarDP=32|41|0;BaseQRankSum=-1.699;DP=73;MQRankSum=0.000;QUALapprox=233;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;ReadPosRankSum=1.502;VarDP=73 GT:AD:DP:GQ:PL:SB 1:32,41,0:73:99:233,0,1305:13,19,20,21 +chrX 1310859 . A . . END=1311120 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1712 +chrX 1311121 . C T, 121.04 . AS_QUALapprox=|131|0;AS_VarDP=27|29|0;BaseQRankSum=0.630;DP=59;MQRankSum=0.000;QUALapprox=131;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;ReadPosRankSum=0.238;VarDP=56 GT:AD:DP:GQ:PL:SB 1:27,29,0:56:99:131,0,1009:13,14,15,14 +chrX 1311122 . A . . END=1311186 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1800 +chrX 1311187 . G T, 145.04 . AS_QUALapprox=|155|0;AS_VarDP=31|35|0;BaseQRankSum=0.853;DP=67;MQRankSum=0.000;QUALapprox=155;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;ReadPosRankSum=-1.690;VarDP=66 GT:AD:DP:GQ:PL:SB 1:31,35,0:66:99:155,0,1148:11,20,20,15 +chrX 1311188 . G . . END=1311439 GT:DP:GQ:MIN_DP:PL 0:73:99:73:0,1800 +chrX 1311440 . TG T, 145.01 . AS_QUALapprox=|155|0;AS_VarDP=22|27|0;BaseQRankSum=0.230;DP=53;MQRankSum=1.149;QUALapprox=155;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190225,53;ReadPosRankSum=0.392;VarDP=49 GT:AD:DP:GQ:PL:SB 1:22,27,0:49:99:155,0,978:10,12,19,8 +chrX 1311442 . T . . END=1312228 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1509 +chrX 1312229 . A G, 1800.04 . AS_QUALapprox=|1810|0;AS_VarDP=0|57|0;DP=59;QUALapprox=1810;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:1810,0,1810:0,0,24,33 +chrX 1312230 . C . . END=1312427 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1791 +chrX 1312428 . G C, 297.04 . AS_QUALapprox=|307|0;AS_VarDP=23|34|0;BaseQRankSum=-0.122;DP=59;MQRankSum=0.000;QUALapprox=307;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;ReadPosRankSum=0.212;VarDP=57 GT:AD:DP:GQ:PL:SB 1:23,34,0:57:99:307,0,1036:12,11,12,22 +chrX 1312429 . G . . END=1312513 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1786 +chrX 1312514 . A . . END=1312514 GT:DP:GQ:MIN_DP:PL 0:58:0:58:0,0 +chrX 1312515 . T . . END=1312642 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1756 +chrX 1312643 . A G, 232.04 . AS_QUALapprox=|242|0;AS_VarDP=21|31|0;BaseQRankSum=-2.107;DP=56;MQRankSum=0.000;QUALapprox=242;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;ReadPosRankSum=0.466;VarDP=52 GT:AD:DP:GQ:PL:SB 1:21,31,0:52:99:242,0,952:12,9,22,9 +chrX 1312644 . T . . END=1312965 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1724 +chrX 1312966 . T . . END=1312966 GT:DP:GQ:MIN_DP:PL 0:59:15:59:0,15 +chrX 1312967 . G . . END=1313273 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1662 +chrX 1313274 . A T, 2250.04 . AS_QUALapprox=|2260|0;AS_VarDP=0|70|0;DP=72;QUALapprox=2260;RAW_GT_COUNT=0,0,1;RAW_MQandDP=256736,72;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,70,0:70:99:2260,0,2260:0,0,39,31 +chrX 1313275 . A . . END=1313554 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1542 +chrX 1313555 . CA C, 1533.01 . AS_QUALapprox=|1543|0;AS_VarDP=0|54|0;DP=60;QUALapprox=1543;RAW_GT_COUNT=0,0,1;RAW_MQandDP=213425,60;VarDP=54 GT:AD:DP:GQ:PL:SB 1:0,54,0:54:99:1543,0,1543:0,0,25,29 +chrX 1313557 . A . . END=1313708 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1406 +chrX 1313709 . C T, 1538.04 . AS_QUALapprox=|1548|0;AS_VarDP=0|49|0;DP=50;QUALapprox=1548;RAW_GT_COUNT=0,0,1;RAW_MQandDP=174539,50;VarDP=49 GT:AD:DP:GQ:PL:SB 1:0,49,0:49:99:1548,0,1548:0,0,25,24 +chrX 1313710 . C . . END=1314216 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,189 +chrX 1314217 . CCCAACCCCA C, 355.01 . AS_QUALapprox=|365|0;AS_VarDP=19|27|0;BaseQRankSum=3.304;DP=52;MQRankSum=1.315;QUALapprox=365;RAW_GT_COUNT=0,0,1;RAW_MQandDP=171729,52;ReadPosRankSum=-0.712;VarDP=46 GT:AD:DP:GQ:PL:SB 1:19,27,0:46:99:365,0,1196:12,7,10,17 +chrX 1314227 . C . . END=1314227 GT:DP:GQ:MIN_DP:PL 0:47:99:47:0,1504 +chrX 1314228 . TGCACCTGCCCAACCCCACTGCACCTGCCCAACCCCACTGCGCCTGCCCAACCCCACTGCATCTGCCCAACCACTCTGTGCCTGCCC T, 215.01 . AS_QUALapprox=|225|0;AS_VarDP=22|27|0;BaseQRankSum=2.237;DP=54;MQRankSum=1.453;QUALapprox=225;RAW_GT_COUNT=0,0,1;RAW_MQandDP=174843,54;ReadPosRankSum=-0.179;VarDP=49 GT:AD:DP:GQ:PL:SB 1:22,27,0:49:99:225,0,1191:13,9,10,17 +chrX 1314315 . A . . END=1314318 GT:DP:GQ:MIN_DP:PL 0:29:45:29:0,45 +chrX 1314319 . A G, 856.04 . AS_QUALapprox=|866|0;AS_VarDP=6|25|0;BaseQRankSum=1.315;DP=33;MQRankSum=1.673;QUALapprox=866;RAW_GT_COUNT=0,0,1;RAW_MQandDP=107359,33;ReadPosRankSum=1.906;VarDP=31 GT:AD:DP:GQ:PL:SB 1:6,25,0:31:99:866,0,1117:2,4,10,15 +chrX 1314320 . C . . END=1314337 GT:DP:GQ:MIN_DP:PL 0:28:90:28:0,90 +chrX 1314338 . C G, 899.04 . AS_QUALapprox=|909|0;AS_VarDP=5|24|0;BaseQRankSum=2.385;DP=32;MQRankSum=-0.764;QUALapprox=909;RAW_GT_COUNT=0,0,1;RAW_MQandDP=105055,32;ReadPosRankSum=1.820;VarDP=29 GT:AD:DP:GQ:PL:SB 1:5,24,0:29:99:909,0,1058:2,3,8,16 +chrX 1314339 . C . . END=1314481 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,360 +chrX 1314482 . A G, 264.04 . AS_QUALapprox=|274|0;AS_VarDP=15|21|0;BaseQRankSum=2.499;DP=36;MQRankSum=-0.321;QUALapprox=274;RAW_GT_COUNT=0,0,1;RAW_MQandDP=117645,36;ReadPosRankSum=0.578;VarDP=36 GT:AD:DP:GQ:PL:SB 1:15,21,0:36:99:274,0,725:11,4,4,17 +chrX 1314483 . C . . END=1314544 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,405 +chrX 1314545 . T . . END=1314545 GT:DP:GQ:MIN_DP:PL 0:20:0:20:0,0 +chrX 1314546 . C . . END=1314563 GT:DP:GQ:MIN_DP:PL 0:19:99:19:0,338 +chrX 1314564 . T . . END=1314564 GT:DP:GQ:MIN_DP:PL 0:16:0:16:0,0 +chrX 1314565 . C . . END=1314590 GT:DP:GQ:MIN_DP:PL 0:15:24:13:0,24 +chrX 1314591 . C . . END=1314591 GT:DP:GQ:MIN_DP:PL 0:6:0:6:0,0 +chrX 1314592 . A . . END=1314603 GT:DP:GQ:MIN_DP:PL 0:7:35:6:0,35 +chrX 1314604 . C . . END=1314604 GT:DP:GQ:MIN_DP:PL 0:6:0:6:0,0 +chrX 1314605 . C . . END=1314622 GT:DP:GQ:MIN_DP:PL 0:4:70:4:0,70 +chrX 1314623 . A . . END=1314623 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 1314624 . C . . END=1314628 GT:DP:GQ:MIN_DP:PL 0:2:59:2:0,59 +chrX 1314629 . A . . END=1314629 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 1314630 . A . . END=1314635 GT:DP:GQ:MIN_DP:PL 0:2:45:2:0,45 +chrX 1314636 . T . . END=1314636 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 1314637 . C . . END=1314646 GT:DP:GQ:MIN_DP:PL 0:2:45:2:0,45 +chrX 1314647 . T . . END=1314647 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 1314648 . C . . END=1314659 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 1314660 . T . . END=1314660 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1314661 . G . . END=1314701 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1314702 . C . . END=1314712 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1314713 . C . . END=1314715 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1314716 . T . . END=1314716 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1314717 . C . . END=1314717 GT:DP:GQ:MIN_DP:PL 0:2:70:2:0,70 +chrX 1314718 . G . . END=1314718 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 1314719 . C . . END=1314734 GT:DP:GQ:MIN_DP:PL 0:3:35:3:0,35 +chrX 1314735 . T . . END=1314735 GT:DP:GQ:MIN_DP:PL 0:4:0:4:0,0 +chrX 1314736 . C . . END=1314736 GT:DP:GQ:MIN_DP:PL 0:4:99:4:0,139 +chrX 1314737 . C . . END=1314737 GT:DP:GQ:MIN_DP:PL 0:4:0:4:0,0 +chrX 1314738 . C . . END=1314753 GT:DP:GQ:MIN_DP:PL 0:6:99:6:0,129 +chrX 1314754 . T . . END=1314754 GT:DP:GQ:MIN_DP:PL 0:6:0:6:0,0 +chrX 1314755 . C . . END=1314772 GT:DP:GQ:MIN_DP:PL 0:7:45:7:0,45 +chrX 1314773 . T . . END=1314773 GT:DP:GQ:MIN_DP:PL 0:7:0:7:0,0 +chrX 1314774 . C . . END=1314791 GT:DP:GQ:MIN_DP:PL 0:9:55:9:0,55 +chrX 1314792 . T . . END=1314792 GT:DP:GQ:MIN_DP:PL 0:9:0:9:0,0 +chrX 1314793 . C . . END=1314848 GT:DP:GQ:MIN_DP:PL 0:9:99:9:0,243 +chrX 1314849 . T . . END=1314849 GT:DP:GQ:MIN_DP:PL 0:11:4:11:0,4 +chrX 1314850 . C . . END=1314863 GT:DP:GQ:MIN_DP:PL 0:12:99:12:0,209 +chrX 1314864 . CCAACCGCACTGCACCTGCCCAACCACACTGAACCTGCT C, 477.01 . AS_QUALapprox=|487|0;AS_VarDP=0|11|0;DP=13;QUALapprox=487;RAW_GT_COUNT=0,0,1;RAW_MQandDP=33489,13;VarDP=11 GT:AD:DP:GQ:PL:SB 1:0,11,0:11:99:487,0,487:0,0,9,2 +chrX 1314903 . C . . END=1315021 GT:DP:GQ:MIN_DP:PL 0:20:99:20:0,303 +chrX 1315022 . A G, 1032.04 . AS_QUALapprox=|1042|0;AS_VarDP=0|33|0;DP=35;QUALapprox=1042;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122578,35;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1042,0,1042:0,0,18,15 +chrX 1315023 . C . . END=1315209 GT:DP:GQ:MIN_DP:PL 0:76:99:76:0,1800 +chrX 1315210 . A C, 1805.04 . AS_QUALapprox=|1815|0;AS_VarDP=1|57|0;BaseQRankSum=2.242;DP=59;MQRankSum=0.000;QUALapprox=1815;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;ReadPosRankSum=0.329;VarDP=58 GT:AD:DP:GQ:PL:SB 1:1,57,0:58:99:1815,0,1824:1,0,19,38 +chrX 1315211 . C . . END=1315545 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,1285 +chrX 1315546 . C G, 15.04 . AS_QUALapprox=|25|0;AS_VarDP=26|27|0;BaseQRankSum=-0.334;DP=57;MQRankSum=0.000;QUALapprox=25;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;ReadPosRankSum=-2.189;VarDP=53 GT:AD:DP:GQ:PL:SB 1:26,27,0:53:25:25,0,898:15,11,13,14 +chrX 1315547 . G . . END=1315584 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1559 +chrX 1315585 . T G, 1958.04 . AS_QUALapprox=|1968|0;AS_VarDP=0|61|0;DP=62;QUALapprox=1968;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,61,0:61:99:1968,0,1968:0,0,31,30 +chrX 1315586 . G . . END=1315800 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,614 +chrX 1315801 . A . . END=1315811 GT:DP:GQ:MIN_DP:PL 0:61:0:61:0,0 +chrX 1315812 . T . . END=1315821 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1215 +chrX 1315822 . A . . END=1315830 GT:DP:GQ:MIN_DP:PL 0:60:0:60:0,0 +chrX 1315831 . A . . END=1315855 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1800 +chrX 1315856 . A G, 35.04 . AS_QUALapprox=|45|0;AS_VarDP=30|34|0;BaseQRankSum=-0.554;DP=64;MQRankSum=0.000;QUALapprox=45;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;ReadPosRankSum=-0.159;VarDP=64 GT:AD:DP:GQ:PL:SB 1:30,34,0:64:45:45,0,1395:18,12,17,17 +chrX 1315857 . T . . END=1316000 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,107 +chrX 1316001 . CAGAT C, 2649.01 . AS_QUALapprox=|2659|0;AS_VarDP=0|60|0;DP=67;QUALapprox=2659;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:2659,0,2659:0,0,36,24 +chrX 1316006 . A . . END=1316058 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1530 +chrX 1316059 . A AATAGATAGATAGATAGATAG, 119.01 . AS_QUALapprox=|129|0;AS_VarDP=29|32|0;BaseQRankSum=0.189;DP=74;MQRankSum=0.000;QUALapprox=129;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;ReadPosRankSum=0.014;VarDP=61 GT:AD:DP:GQ:PL:SB 1:29,32,0:61:99:129,0,1430:16,13,17,15 +chrX 1316060 . A . . END=1316198 GT:DP:GQ:MIN_DP:PL 0:78:99:78:0,1632 +chrX 1316199 . A G, 365.04 . AS_QUALapprox=|375|0;AS_VarDP=32|40|0;BaseQRankSum=-1.653;DP=74;MQRankSum=-0.866;QUALapprox=375;RAW_GT_COUNT=0,0,1;RAW_MQandDP=265609,74;ReadPosRankSum=-0.578;VarDP=72 GT:AD:DP:GQ:PL:SB 1:32,40,0:72:99:375,0,1741:15,17,16,24 +chrX 1316200 . G . . END=1316221 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1800 +chrX 1316222 . TAGATAGATGATAGATGAC T, 234.01 . AS_QUALapprox=|244|0;AS_VarDP=36|40|0;BaseQRankSum=1.385;DP=77;MQRankSum=-0.922;QUALapprox=244;RAW_GT_COUNT=0,0,1;RAW_MQandDP=276409,77;ReadPosRankSum=0.533;VarDP=76 GT:AD:DP:GQ:PL:SB 1:36,40,0:76:99:244,0,1791:15,21,19,21 +chrX 1316241 . A . . END=1316264 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1395 +chrX 1316265 . GATA G, 260.01 . AS_QUALapprox=|270|0;AS_VarDP=32|39|0;BaseQRankSum=0.043;DP=71;MQRankSum=-0.878;QUALapprox=270;RAW_GT_COUNT=0,0,1;RAW_MQandDP=254809,71;ReadPosRankSum=0.247;VarDP=71 GT:AD:DP:GQ:PL:SB 1:32,39,0:71:99:270,0,1710:14,18,19,20 +chrX 1316269 . GATAGA G,GTAGA, 259.01 . AS_QUALapprox=|0|269|0;AS_VarDP=31|0|22|0;BaseQRankSum=0.226;DP=70;MQRankSum=0.000;QUALapprox=269;RAW_GT_COUNT=0,0,1;RAW_MQandDP=251209,70;ReadPosRankSum=1.199;VarDP=53 GT:AD:DP:GQ:PL:SB 2:31,0,22,0:53:99:269,1012,0,1339:15,16,13,9 +chrX 1316275 . T . . END=1316302 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1800 +chrX 1316303 . T . . END=1316307 GT:DP:GQ:MIN_DP:PL 0:59:6:59:0,6 +chrX 1316308 . A . . END=1316608 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1765 +chrX 1316609 . G A, 2292.04 . AS_QUALapprox=|2302|0;AS_VarDP=0|70|0;DP=76;QUALapprox=2302;RAW_GT_COUNT=0,0,1;RAW_MQandDP=273600,76;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,70,0:70:99:2302,0,2302:0,0,42,28 +chrX 1316610 . G . . END=1316693 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1800 +chrX 1316694 . T C, 2262.04 . AS_QUALapprox=|2272|0;AS_VarDP=0|68|0;DP=72;QUALapprox=2272;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,68,0:68:99:2272,0,2272:0,0,39,29 +chrX 1316695 . T . . END=1316969 GT:DP:GQ:MIN_DP:PL 0:73:99:73:0,450 +chrX 1316970 . G A, 2496.04 . AS_QUALapprox=|2506|0;AS_VarDP=1|74|0;BaseQRankSum=-0.136;DP=78;MQRankSum=-0.214;QUALapprox=2506;RAW_GT_COUNT=0,0,1;RAW_MQandDP=271511,78;ReadPosRankSum=0.046;VarDP=75 GT:AD:DP:GQ:PL:SB 1:1,74,0:75:99:2506,0,2541:0,1,49,25 +chrX 1316971 . G . . END=1317245 GT:DP:GQ:MIN_DP:PL 0:76:99:76:0,1492 +chrX 1317246 . C CTT,CTTT,CTTTT, 856.01 . AS_QUALapprox=|687|866|777|0;AS_VarDP=0|5|5|3|0;DP=62;QUALapprox=866;RAW_GT_COUNT=0,0,1;RAW_MQandDP=209233,62;VarDP=13 GT:AD:DP:GQ:PL:SB 2:0,5,5,3,0:13:89:866,179,0,89,331:0,0,3,10 +chrX 1317247 . T . . END=1317341 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,724 +chrX 1317342 . C T, 10.05 . AS_QUALapprox=|20|0;AS_VarDP=22|22|0;BaseQRankSum=0.790;DP=46;MQRankSum=0.000;QUALapprox=20;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;ReadPosRankSum=-0.763;VarDP=44 GT:AD:DP:GQ:PL:SB 1:22,22,0:44:20:20,0,735:14,8,9,13 +chrX 1317343 . C . . END=1317572 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1490 +chrX 1317573 . A T,AT, 507.01 . AS_QUALapprox=|156|517|0;AS_VarDP=0|21|18|0;DP=54;QUALapprox=517;RAW_GT_COUNT=0,0,1;RAW_MQandDP=191825,54;VarDP=39 GT:AD:DP:GQ:PL:SB 2:0,21,18,0:39:99:517,361,0,756:0,0,19,20 +chrX 1317574 . T . . END=1318094 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1120 +chrX 1318095 . TC T, 446.01 . AS_QUALapprox=|456|0;AS_VarDP=17|29|0;BaseQRankSum=-0.569;DP=52;MQRankSum=0.000;QUALapprox=456;RAW_GT_COUNT=0,0,1;RAW_MQandDP=181800,52;ReadPosRankSum=-1.628;VarDP=46 GT:AD:DP:GQ:PL:SB 1:17,29,0:46:99:456,0,1286:10,7,12,17 +chrX 1318097 . T . . END=1318462 GT:DP:GQ:MIN_DP:PL 0:43:52:36:0,52 +chrX 1318463 . G A, 201.04 . AS_QUALapprox=|211|0;AS_VarDP=23|31|0;BaseQRankSum=-1.163;DP=54;MQRankSum=0.000;QUALapprox=211;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;ReadPosRankSum=-0.954;VarDP=54 GT:AD:DP:GQ:PL:SB 1:23,31,0:54:99:211,0,980:10,13,13,18 +chrX 1318464 . A . . END=1318846 GT:DP:GQ:MIN_DP:PL 0:47:99:47:0,996 +chrX 1318847 . G A, 104.04 . AS_QUALapprox=|114|0;AS_VarDP=14|19|0;BaseQRankSum=-2.262;DP=33;MQRankSum=-0.797;QUALapprox=114;RAW_GT_COUNT=0,0,1;RAW_MQandDP=116800,33;ReadPosRankSum=0.510;VarDP=33 GT:AD:DP:GQ:PL:SB 1:14,19,0:33:99:114,0,600:4,10,6,13 +chrX 1318848 . C . . END=1318915 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,1007 +chrX 1318916 . C CA, 31.01 . AS_QUALapprox=|41|0;AS_VarDP=18|21|0;BaseQRankSum=-2.479;DP=45;MQRankSum=0.000;QUALapprox=41;RAW_GT_COUNT=0,0,1;RAW_MQandDP=157129,45;ReadPosRankSum=-0.451;VarDP=39 GT:AD:DP:GQ:PL:SB 1:18,21,0:39:41:41,0,518:4,14,6,15 +chrX 1318917 . A . . END=1319327 GT:DP:GQ:MIN_DP:PL 0:56:35:50:0,35 +chrX 1319328 . C T, 0.07 . AS_QUALapprox=|6|0;AS_VarDP=25|24|0;BaseQRankSum=1.690;DP=50;MQRankSum=0.000;QUALapprox=6;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;ReadPosRankSum=0.020;VarDP=49 GT:AD:DP:GQ:PL:SB 1:25,24,0:49:6:6,0,823:10,15,14,10 +chrX 1319329 . C . . END=1319874 GT:DP:GQ:MIN_DP:PL 0:51:49:49:0,49 +chrX 1319875 . T C, 32.04 . AS_QUALapprox=|42|0;AS_VarDP=29|31|0;BaseQRankSum=-1.850;DP=60;MQRankSum=0.000;QUALapprox=42;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;ReadPosRankSum=1.175;VarDP=60 GT:AD:DP:GQ:PL:SB 1:29,31,0:60:42:42,0,1233:14,15,16,15 +chrX 1319876 . G . . END=1319881 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,990 +chrX 1319882 . T . . END=1319885 GT:DP:GQ:MIN_DP:PL 0:53:0:53:0,0 +chrX 1319886 . T . . END=1319917 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1438 +chrX 1319918 . T C, 106.04 . AS_QUALapprox=|116|0;AS_VarDP=23|25|0;BaseQRankSum=-0.559;DP=49;MQRankSum=0.000;QUALapprox=116;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;ReadPosRankSum=0.506;VarDP=48 GT:AD:DP:GQ:PL:SB 1:23,25,0:48:99:116,0,1064:14,9,12,13 +chrX 1319919 . G . . END=1320498 GT:DP:GQ:MIN_DP:PL 0:68:39:59:0,39 +chrX 1320499 . C CT, 1116.01 . AS_QUALapprox=|1126|0;AS_VarDP=0|46|0;DP=55;QUALapprox=1126;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=46 GT:AD:DP:GQ:PL:SB 1:0,46,0:46:99:1126,0,1126:0,0,30,16 +chrX 1320500 . T . . END=1321857 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,855 +chrX 1321858 . G A, 2249.04 . AS_QUALapprox=|2259|0;AS_VarDP=1|68|0;BaseQRankSum=-0.288;DP=71;MQRankSum=0.000;QUALapprox=2259;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;ReadPosRankSum=1.482;VarDP=69 GT:AD:DP:GQ:PL:SB 1:1,68,0:69:99:2259,0,2294:0,1,33,35 +chrX 1321859 . G . . END=1321890 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1800 +chrX 1321891 . G A, 2231.04 . AS_QUALapprox=|2241|0;AS_VarDP=0|69|0;DP=72;QUALapprox=2241;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,69,0:69:99:2241,0,2241:0,0,35,34 +chrX 1321892 . A . . END=1322094 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1623 +chrX 1322095 . T C, 1701.04 . AS_QUALapprox=|1711|0;AS_VarDP=0|53|0;DP=55;QUALapprox=1711;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=53 GT:AD:DP:GQ:PL:SB 1:0,53,0:53:99:1711,0,1711:0,0,27,26 +chrX 1322096 . C . . END=1322098 GT:DP:GQ:MIN_DP:PL 0:46:99:46:0,1539 +chrX 1322099 . A ATTATTTAT,ATTATTTATTTAT, 1169.01 . AS_QUALapprox=|1179|1127|0;AS_VarDP=0|17|15|0;DP=55;QUALapprox=1179;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,17,15,0:32:52:1179,0,52,954:0,0,16,16 +chrX 1322100 . T . . END=1322168 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,1439 +chrX 1322169 . A G, 1785.04 . AS_QUALapprox=|1795|0;AS_VarDP=0|48|0;DP=48;QUALapprox=1795;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=48 GT:AD:DP:GQ:PL:SB 1:0,48,0:48:99:1795,0,1795:0,0,23,25 +chrX 1322170 . A . . END=1322270 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,240 +chrX 1322271 . AT A, 242.01 . AS_QUALapprox=|252|0;AS_VarDP=12|23|0;BaseQRankSum=0.315;DP=48;MQRankSum=0.000;QUALapprox=252;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172336,48;ReadPosRankSum=1.686;VarDP=35 GT:AD:DP:GQ:PL:SB 1:12,23,0:35:99:252,0,587:6,6,12,11 +chrX 1322273 . T . . END=1322438 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1140 +chrX 1322439 . GTTTTTTT G,GTTTTTTTT, 379.01 . AS_QUALapprox=|267|389|0;AS_VarDP=0|19|19|0;DP=53;QUALapprox=389;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=38 GT:AD:DP:GQ:PL:SB 2:0,19,19,0:38:99:389,122,0,684:0,0,16,22 +chrX 1322447 . T . . END=1322598 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,1189 +chrX 1322599 . T C, 336.04 . AS_QUALapprox=|346|0;AS_VarDP=25|37|0;BaseQRankSum=-0.988;DP=63;MQRankSum=0.000;QUALapprox=346;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;ReadPosRankSum=0.237;VarDP=62 GT:AD:DP:GQ:PL:SB 1:25,37,0:62:99:346,0,1150:15,10,23,14 +chrX 1322600 . G . . END=1322667 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1740 +chrX 1322668 . T C, 506.04 . AS_QUALapprox=|516|0;AS_VarDP=29|42|0;BaseQRankSum=2.290;DP=75;MQRankSum=0.000;QUALapprox=516;RAW_GT_COUNT=0,0,1;RAW_MQandDP=270000,75;ReadPosRankSum=1.018;VarDP=71 GT:AD:DP:GQ:PL:SB 1:29,42,0:71:99:516,0,1384:15,14,22,20 +chrX 1322669 . C . . END=1322904 GT:DP:GQ:MIN_DP:PL 0:82:99:82:0,1800 +chrX 1322905 . A G, 1893.04 . AS_QUALapprox=|1903|0;AS_VarDP=1|61|0;BaseQRankSum=-0.604;DP=67;MQRankSum=0.000;QUALapprox=1903;RAW_GT_COUNT=0,0,1;RAW_MQandDP=239716,67;ReadPosRankSum=-0.671;VarDP=62 GT:AD:DP:GQ:PL:SB 1:1,61,0:62:99:1903,0,1938:0,1,36,25 +chrX 1322906 . G . . END=1323157 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1037 +chrX 1323158 . T TATAAAATAAAATAAAATAAA, 509.01 . AS_QUALapprox=|519|0;AS_VarDP=14|26|0;BaseQRankSum=-0.944;DP=54;MQRankSum=0.000;QUALapprox=519;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;ReadPosRankSum=-1.945;VarDP=40 GT:AD:DP:GQ:PL:SB 1:14,26,0:40:99:519,0,1144:9,5,15,11 +chrX 1323159 . A . . END=1323779 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,342 +chrX 1323780 . A C, 2339.04 . AS_QUALapprox=|2349|0;AS_VarDP=0|76|0;DP=77;QUALapprox=2349;RAW_GT_COUNT=0,0,1;RAW_MQandDP=260256,77;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,76,0:76:99:2349,0,2349:0,0,38,38 +chrX 1323781 . G . . END=1323981 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1410 +chrX 1323982 . C . . END=1323982 GT:DP:GQ:MIN_DP:PL 0:44:15:44:0,15 +chrX 1323983 . C . . END=1324412 GT:DP:GQ:MIN_DP:PL 0:47:38:43:0,38 +chrX 1324413 . G GGAAA, 1327.01 . AS_QUALapprox=|1337|0;AS_VarDP=0|30|0;DP=38;QUALapprox=1337;RAW_GT_COUNT=0,0,1;RAW_MQandDP=134161,38;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:1337,0,1338:0,0,18,12 +chrX 1324414 . G . . END=1324451 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,939 +chrX 1324452 . AAAAG A, 1259.01 . AS_QUALapprox=|1269|0;AS_VarDP=0|29|0;DP=36;QUALapprox=1269;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129600,36;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:1269,0,1269:0,0,25,4 +chrX 1324457 . A . . END=1324515 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,644 +chrX 1324516 . A G, 792.04 . AS_QUALapprox=|802|0;AS_VarDP=0|25|0;DP=27;QUALapprox=802;RAW_GT_COUNT=0,0,1;RAW_MQandDP=95449,27;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:802,0,802:0,0,24,1 +chrX 1324517 . G . . END=1324559 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,747 +chrX 1324560 . A G, 1313.04 . AS_QUALapprox=|1323|0;AS_VarDP=0|42|0;DP=45;QUALapprox=1323;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162000,45;VarDP=42 GT:AD:DP:GQ:PL:SB 1:0,42,0:42:99:1323,0,1323:0,0,27,15 +chrX 1324561 . A . . END=1325248 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,362 +chrX 1325249 . C . . END=1325249 GT:DP:GQ:MIN_DP:PL 0:56:18:56:0,18 +chrX 1325250 . C . . END=1325403 GT:DP:GQ:MIN_DP:PL 0:31:45:31:0,45 +chrX 1325404 . A . . END=1325404 GT:DP:GQ:MIN_DP:PL 0:14:0:14:0,0 +chrX 1325405 . G . . END=1325406 GT:DP:GQ:MIN_DP:PL 0:13:24:13:0,24 +chrX 1325407 . A . . END=1325407 GT:DP:GQ:MIN_DP:PL 0:14:0:14:0,0 +chrX 1325408 . G . . END=1325408 GT:DP:GQ:MIN_DP:PL 0:15:99:15:0,405 +chrX 1325409 . A . . END=1325409 GT:DP:GQ:MIN_DP:PL 0:15:0:15:0,0 +chrX 1325410 . G . . END=1325416 GT:DP:GQ:MIN_DP:PL 0:15:25:15:0,25 +chrX 1325417 . G . . END=1325419 GT:DP:GQ:MIN_DP:PL 0:14:0:14:0,0 +chrX 1325420 . G . . END=1325421 GT:DP:GQ:MIN_DP:PL 0:14:99:14:0,422 +chrX 1325422 . C . . END=1325423 GT:DP:GQ:MIN_DP:PL 0:13:0:13:0,0 +chrX 1325424 . G . . END=1325425 GT:DP:GQ:MIN_DP:PL 0:12:99:12:0,372 +chrX 1325426 . A . . END=1325428 GT:DP:GQ:MIN_DP:PL 0:12:0:12:0,0 +chrX 1325429 . G . . END=1325429 GT:DP:GQ:MIN_DP:PL 0:11:99:11:0,372 +chrX 1325430 . A . . END=1325430 GT:DP:GQ:MIN_DP:PL 0:14:0:14:0,0 +chrX 1325431 . G . . END=1325432 GT:DP:GQ:MIN_DP:PL 0:13:99:13:0,407 +chrX 1325433 . G . . END=1325433 GT:DP:GQ:MIN_DP:PL 0:12:0:12:0,0 +chrX 1325434 . G . . END=1326082 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,207 +chrX 1326083 . G C, 69.04 . AS_QUALapprox=|79|0;AS_VarDP=36|39|0;BaseQRankSum=-0.160;DP=79;MQRankSum=1.068;QUALapprox=79;RAW_GT_COUNT=0,0,1;RAW_MQandDP=283825,79;ReadPosRankSum=-1.697;VarDP=75 GT:AD:DP:GQ:PL:SB 1:36,39,0:75:79:79,0,1260:17,19,24,15 +chrX 1326084 . A . . END=1326121 GT:DP:GQ:MIN_DP:PL 0:76:99:76:0,1800 +chrX 1326122 . C T, 115.04 . AS_QUALapprox=|125|0;AS_VarDP=36|38|0;BaseQRankSum=1.682;DP=76;MQRankSum=0.038;QUALapprox=125;RAW_GT_COUNT=0,0,1;RAW_MQandDP=271025,76;ReadPosRankSum=1.444;VarDP=74 GT:AD:DP:GQ:PL:SB 1:36,38,0:74:99:125,0,1190:16,20,27,11 +chrX 1326123 . G . . END=1326320 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1594 +chrX 1326321 . A G, 158.04 . AS_QUALapprox=|168|0;AS_VarDP=28|35|0;BaseQRankSum=-1.028;DP=65;MQRankSum=1.150;QUALapprox=168;RAW_GT_COUNT=0,0,1;RAW_MQandDP=233425,65;ReadPosRankSum=-0.249;VarDP=63 GT:AD:DP:GQ:PL:SB 1:28,35,0:63:99:168,0,1056:15,13,15,20 +chrX 1326322 . G . . END=1326399 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,720 +chrX 1326400 . A . . END=1326403 GT:DP:GQ:MIN_DP:PL 0:52:0:52:0,0 +chrX 1326404 . T A, 382.04 . AS_QUALapprox=|392|0;AS_VarDP=23|31|0;BaseQRankSum=1.514;DP=55;MQRankSum=1.198;QUALapprox=392;RAW_GT_COUNT=0,0,1;RAW_MQandDP=197425,55;ReadPosRankSum=0.951;VarDP=54 GT:AD:DP:GQ:PL:SB 1:23,31,0:54:99:392,0,1061:12,11,13,18 +chrX 1326405 . A . . END=1327295 GT:DP:GQ:MIN_DP:PL 0:63:46:45:0,46 +chrX 1327296 . A G, 493.04 . AS_QUALapprox=|503|0;AS_VarDP=25|33|0;BaseQRankSum=-2.163;DP=63;MQRankSum=-1.217;QUALapprox=503;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219938,63;ReadPosRankSum=-0.443;VarDP=58 GT:AD:DP:GQ:PL:SB 1:25,33,0:58:99:503,0,1352:10,15,16,17 +chrX 1327297 . G . . END=1327503 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,199 +chrX 1327504 . T C, 369.04 . AS_QUALapprox=|379|0;AS_VarDP=21|37|0;BaseQRankSum=-2.695;DP=62;MQRankSum=1.138;QUALapprox=379;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219507,62;ReadPosRankSum=-0.429;VarDP=58 GT:AD:DP:GQ:PL:SB 1:21,37,0:58:99:379,0,1059:15,6,20,17 +chrX 1327505 . G . . END=1327540 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1800 +chrX 1327541 . A G, 316.04 . AS_QUALapprox=|326|0;AS_VarDP=26|38|0;BaseQRankSum=-1.655;DP=67;MQRankSum=0.541;QUALapprox=326;RAW_GT_COUNT=0,0,1;RAW_MQandDP=233927,67;ReadPosRankSum=-0.506;VarDP=64 GT:AD:DP:GQ:PL:SB 1:26,38,0:64:99:326,0,1169:18,8,17,21 +chrX 1327542 . G . . END=1327602 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1800 +chrX 1327603 . A G, 217.04 . AS_QUALapprox=|227|0;AS_VarDP=31|39|0;BaseQRankSum=-1.407;DP=74;MQRankSum=-0.265;QUALapprox=227;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262471,74;ReadPosRankSum=0.574;VarDP=70 GT:AD:DP:GQ:PL:SB 1:31,39,0:70:99:227,0,1284:17,14,13,26 +chrX 1327604 . C . . END=1327901 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1800 +chrX 1327902 . G A, 56.04 . AS_QUALapprox=|66|0;AS_VarDP=32|31|0;BaseQRankSum=3.133;DP=65;MQRankSum=0.000;QUALapprox=66;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;ReadPosRankSum=-0.454;VarDP=63 GT:AD:DP:GQ:PL:SB 1:32,31,0:63:66:66,0,1068:13,19,16,15 +chrX 1327903 . G . . END=1328388 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,396 +chrX 1328389 . A AT, 385.01 . AS_QUALapprox=|395|0;AS_VarDP=2|17|0;BaseQRankSum=0.790;DP=22;MQRankSum=1.464;QUALapprox=395;RAW_GT_COUNT=0,0,1;RAW_MQandDP=69600,22;ReadPosRankSum=0.731;VarDP=19 GT:AD:DP:GQ:PL:SB 1:2,17,0:19:99:395,0,433:0,2,5,12 +chrX 1328390 . T . . END=1328539 GT:DP:GQ:MIN_DP:PL 0:38:55:38:0,55 +chrX 1328540 . A T,AT, 32.01 . AS_QUALapprox=|0|42|0;AS_VarDP=11|5|12|0;BaseQRankSum=-0.376;DP=30;MQRankSum=-0.624;QUALapprox=42;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90187,30;ReadPosRankSum=0.353;VarDP=28 GT:AD:DP:GQ:PL:SB 2:11,5,12,0:28:42:42,204,0,443:7,4,9,8 +chrX 1328541 . T . . END=1328804 GT:DP:GQ:MIN_DP:PL 0:27:36:19:0,36 +chrX 1328805 . C . . END=1328805 GT:DP:GQ:MIN_DP:PL 0:44:16:44:0,16 +chrX 1328806 . T . . END=1329259 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,831 +chrX 1329260 . G C, 263.04 . AS_QUALapprox=|273|0;AS_VarDP=24|31|0;BaseQRankSum=1.523;DP=56;MQRankSum=0.000;QUALapprox=273;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;ReadPosRankSum=-0.017;VarDP=55 GT:AD:DP:GQ:PL:SB 1:24,31,0:55:99:273,0,1047:12,12,19,12 +chrX 1329261 . T . . END=1329314 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,1538 +chrX 1329315 . C T, 169.04 . AS_QUALapprox=|179|0;AS_VarDP=23|28|0;BaseQRankSum=0.964;DP=53;MQRankSum=0.000;QUALapprox=179;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;ReadPosRankSum=-0.256;VarDP=51 GT:AD:DP:GQ:PL:SB 1:23,28,0:51:99:179,0,898:10,13,17,11 +chrX 1329316 . G . . END=1329479 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1555 +chrX 1329480 . T C, 293.04 . AS_QUALapprox=|303|0;AS_VarDP=25|31|0;BaseQRankSum=-0.561;DP=57;MQRankSum=0.154;QUALapprox=303;RAW_GT_COUNT=0,0,1;RAW_MQandDP=203834,57;ReadPosRankSum=0.511;VarDP=56 GT:AD:DP:GQ:PL:SB 1:25,31,0:56:99:303,0,1391:15,10,14,17 +chrX 1329481 . G T, 293.04 . AS_QUALapprox=|303|0;AS_VarDP=25|31|0;BaseQRankSum=-0.058;DP=59;MQRankSum=0.154;QUALapprox=303;RAW_GT_COUNT=0,0,1;RAW_MQandDP=211034,59;ReadPosRankSum=0.544;VarDP=56 GT:AD:DP:GQ:PL:SB 1:25,31,0:56:99:303,0,1391:15,10,14,17 +chrX 1329482 . C . . END=1329510 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1648 +chrX 1329511 . G A, 430.04 . AS_QUALapprox=|440|0;AS_VarDP=22|32|0;BaseQRankSum=-0.057;DP=55;MQRankSum=0.269;QUALapprox=440;RAW_GT_COUNT=0,0,1;RAW_MQandDP=196634,55;ReadPosRankSum=0.194;VarDP=54 GT:AD:DP:GQ:PL:SB 1:22,32,0:54:99:440,0,1420:13,9,11,21 +chrX 1329512 . C . . END=1329518 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1703 +chrX 1329519 . A G, 569.04 . AS_QUALapprox=|579|0;AS_VarDP=21|35|0;BaseQRankSum=-2.373;DP=58;MQRankSum=0.368;QUALapprox=579;RAW_GT_COUNT=0,0,1;RAW_MQandDP=207434,58;ReadPosRankSum=-0.702;VarDP=56 GT:AD:DP:GQ:PL:SB 1:21,35,0:56:99:579,0,1524:12,9,11,24 +chrX 1329520 . G . . END=1329597 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1581 +chrX 1329598 . C T, 126.04 . AS_QUALapprox=|136|0;AS_VarDP=27|30|0;BaseQRankSum=1.048;DP=60;MQRankSum=0.015;QUALapprox=136;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212348,60;ReadPosRankSum=0.136;VarDP=57 GT:AD:DP:GQ:PL:SB 1:27,30,0:57:99:136,0,907:11,16,7,23 +chrX 1329599 . G . . END=1330519 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,174 +chrX 1330520 . C G, 20.04 . AS_QUALapprox=|30|0;AS_VarDP=35|34|0;BaseQRankSum=1.396;DP=69;MQRankSum=0.000;QUALapprox=30;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;ReadPosRankSum=0.336;VarDP=69 GT:AD:DP:GQ:PL:SB 1:35,34,0:69:30:30,0,1114:20,15,19,15 +chrX 1330521 . G . . END=1331065 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,185 +chrX 1331066 . T G, 322.04 . AS_QUALapprox=|332|0;AS_VarDP=24|35|0;BaseQRankSum=-0.806;DP=63;MQRankSum=1.747;QUALapprox=332;RAW_GT_COUNT=0,0,1;RAW_MQandDP=224137,63;ReadPosRankSum=0.208;VarDP=59 GT:AD:DP:GQ:PL:SB 1:24,35,0:59:99:332,0,1126:13,11,10,25 +chrX 1331067 . G . . END=1331302 GT:DP:GQ:MIN_DP:PL 0:80:99:80:0,301 +chrX 1331303 . C . . END=1331303 GT:DP:GQ:MIN_DP:PL 0:92:0:92:0,0 +chrX 1331304 . G . . END=1331449 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1181 +chrX 1331450 . G . . END=1331450 GT:DP:GQ:MIN_DP:PL 0:64:9:64:0,9 +chrX 1331451 . G . . END=1332317 GT:DP:GQ:MIN_DP:PL 0:94:99:94:0,200 +chrX 1332318 . G A, 4299.04 . AS_QUALapprox=|4309|0;AS_VarDP=0|115|0;DP=119;QUALapprox=4309;RAW_GT_COUNT=0,0,1;RAW_MQandDP=428400,119;VarDP=115 GT:AD:DP:GQ:PL:SB 1:0,115,0:115:99:4309,0,4309:0,0,81,34 +chrX 1332319 . T . . END=1332428 GT:DP:GQ:MIN_DP:PL 0:103:99:103:0,655 +chrX 1332429 . G C, 2080.04 . AS_QUALapprox=|2090|0;AS_VarDP=34|83|0;BaseQRankSum=1.619;DP=118;MQRankSum=0.197;QUALapprox=2090;RAW_GT_COUNT=0,0,1;RAW_MQandDP=422970,118;ReadPosRankSum=-0.188;VarDP=117 GT:AD:DP:GQ:PL:SB 1:34,83,0:117:99:2090,0,3171:17,17,54,29 +chrX 1332430 . C . . END=1332538 GT:DP:GQ:MIN_DP:PL 0:112:99:112:0,1800 +chrX 1332539 . GT G, 1355.01 . AS_QUALapprox=|1365|0;AS_VarDP=34|76|0;BaseQRankSum=-0.231;DP=116;MQRankSum=-3.010;QUALapprox=1365;RAW_GT_COUNT=0,0,1;RAW_MQandDP=392913,116;ReadPosRankSum=-1.573;VarDP=110 GT:AD:DP:GQ:PL:SB 1:34,76,0:110:99:1365,0,2471:13,21,35,41 +chrX 1332541 . T . . END=1332805 GT:DP:GQ:MIN_DP:PL 0:100:99:100:0,1800 +chrX 1332806 . C CT, 1199.01 . AS_QUALapprox=|1209|0;AS_VarDP=0|55|0;DP=67;QUALapprox=1209;RAW_GT_COUNT=0,0,1;RAW_MQandDP=238625,67;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:1209,0,1209:0,0,23,32 +chrX 1332807 . T . . END=1333056 GT:DP:GQ:MIN_DP:PL 0:85:99:85:0,1800 +chrX 1333057 . GC G, 3175.01 . AS_QUALapprox=|3185|0;AS_VarDP=0|89|0;DP=93;QUALapprox=3185;RAW_GT_COUNT=0,0,1;RAW_MQandDP=332857,93;VarDP=89 GT:AD:DP:GQ:PL:SB 1:0,89,0:89:99:3185,0,3185:0,0,48,41 +chrX 1333059 . C . . END=1333899 GT:DP:GQ:MIN_DP:PL 0:92:99:92:0,515 +chrX 1333900 . C T, 2871.04 . AS_QUALapprox=|2881|0;AS_VarDP=0|81|0;DP=84;QUALapprox=2881;RAW_GT_COUNT=0,0,1;RAW_MQandDP=299936,84;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,81,0:81:99:2881,0,2881:0,0,43,38 +chrX 1333901 . A . . END=1334131 GT:DP:GQ:MIN_DP:PL 0:85:99:85:0,530 +chrX 1334132 . C G,T, 91.04 . AS_QUALapprox=|46|101|0;AS_VarDP=32|34|34|0;BaseQRankSum=1.590;DP=104;MQRankSum=0.579;QUALapprox=101;RAW_GT_COUNT=0,0,1;RAW_MQandDP=370602,104;ReadPosRankSum=0.310;VarDP=100 GT:AD:DP:GQ:PL:SB 2:32,34,34,0:100:55:101,55,0,1150:16,16,37,31 +chrX 1334133 . C . . END=1334252 GT:DP:GQ:MIN_DP:PL 0:116:99:116:0,1078 +chrX 1334253 . G C, 1514.04 . AS_QUALapprox=|1524|0;AS_VarDP=33|67|0;BaseQRankSum=-0.609;DP=106;MQRankSum=1.446;QUALapprox=1524;RAW_GT_COUNT=0,0,1;RAW_MQandDP=381025,106;ReadPosRankSum=2.729;VarDP=100 GT:AD:DP:GQ:PL:SB 1:33,67,0:100:99:1524,0,2947:12,21,23,44 +chrX 1334254 . C . . END=1334261 GT:DP:GQ:MIN_DP:PL 0:97:99:97:0,1800 +chrX 1334262 . C T, 1607.04 . AS_QUALapprox=|1617|0;AS_VarDP=29|66|0;BaseQRankSum=-2.276;DP=100;MQRankSum=1.531;QUALapprox=1617;RAW_GT_COUNT=0,0,1;RAW_MQandDP=359425,100;ReadPosRankSum=1.898;VarDP=95 GT:AD:DP:GQ:PL:SB 1:29,66,0:95:99:1617,0,2912:11,18,24,42 +chrX 1334263 . T . . END=1334313 GT:DP:GQ:MIN_DP:PL 0:94:99:94:0,1800 +chrX 1334314 . G A, 1265.04 . AS_QUALapprox=|1275|0;AS_VarDP=25|62|0;BaseQRankSum=1.102;DP=92;MQRankSum=0.000;QUALapprox=1275;RAW_GT_COUNT=0,0,1;RAW_MQandDP=331200,92;ReadPosRankSum=-1.440;VarDP=87 GT:AD:DP:GQ:PL:SB 1:25,62,0:87:99:1275,0,2104:12,13,27,35 +chrX 1334315 . T . . END=1334458 GT:DP:GQ:MIN_DP:PL 0:113:99:113:0,1800 +chrX 1334459 . T C, 2054.04 . AS_QUALapprox=|2064|0;AS_VarDP=18|89|0;BaseQRankSum=-2.444;DP=112;MQRankSum=2.919;QUALapprox=2064;RAW_GT_COUNT=0,0,1;RAW_MQandDP=388902,112;ReadPosRankSum=0.333;VarDP=107 GT:AD:DP:GQ:PL:SB 1:18,89,0:107:99:2064,0,2670:15,3,41,48 +chrX 1334460 . G . . END=1334515 GT:DP:GQ:MIN_DP:PL 0:86:99:86:0,1785 +chrX 1334516 . T . . END=1334516 GT:DP:GQ:MIN_DP:PL 0:68:0:68:0,0 +chrX 1334517 . A . . END=1334520 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1800 +chrX 1334521 . C . . END=1334521 GT:DP:GQ:MIN_DP:PL 0:65:0:65:0,0 +chrX 1334522 . A . . END=1334864 GT:DP:GQ:MIN_DP:PL 0:59:49:59:0,49 +chrX 1334865 . G A,GA,GAA, 626.01 . AS_QUALapprox=|0|596|636|0;AS_VarDP=0|2|17|15|0;DP=50;QUALapprox=636;RAW_GT_COUNT=0,0,1;RAW_MQandDP=179764,50;VarDP=34 GT:AD:DP:GQ:PL:SB 3:0,2,17,15,0:34:40:636,1013,40,0,600:0,0,15,19 +chrX 1334866 . A . . END=1335059 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,307 +chrX 1335060 . C A, 328.04 . AS_QUALapprox=|338|0;AS_VarDP=23|33|0;BaseQRankSum=0.236;DP=59;MQRankSum=0.000;QUALapprox=338;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;ReadPosRankSum=0.650;VarDP=56 GT:AD:DP:GQ:PL:SB 1:23,33,0:56:99:338,0,1097:11,12,14,19 +chrX 1335061 . G . . END=1335417 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,1106 +chrX 1335418 . AT A, 19 . AS_QUALapprox=|29|0;AS_VarDP=20|20|0;BaseQRankSum=1.032;DP=48;MQRankSum=0.000;QUALapprox=29;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;ReadPosRankSum=-0.892;VarDP=40 GT:AD:DP:GQ:PL:SB 1:20,20,0:40:29:29,0,486:13,7,11,9 +chrX 1335420 . T . . END=1336906 GT:DP:GQ:MIN_DP:PL 0:67:87:67:0,87 +chrX 1336907 . T C, 51.04 . AS_QUALapprox=|61|0;AS_VarDP=37|38|0;BaseQRankSum=0.442;DP=78;MQRankSum=0.000;QUALapprox=61;RAW_GT_COUNT=0,0,1;RAW_MQandDP=280800,78;ReadPosRankSum=0.027;VarDP=75 GT:AD:DP:GQ:PL:SB 1:37,38,0:75:61:61,0,1281:23,14,20,18 +chrX 1336908 . A . . END=1337998 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,595 +chrX 1337999 . C . . END=1337999 GT:DP:GQ:MIN_DP:PL 0:38:8:38:0,8 +chrX 1338000 . A . . END=1340706 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,943 +chrX 1340707 . C T, 2507.04 . AS_QUALapprox=|2517|0;AS_VarDP=0|75|0;DP=82;QUALapprox=2517;RAW_GT_COUNT=0,0,1;RAW_MQandDP=295200,82;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,75,0:75:99:2517,0,2517:0,0,43,32 +chrX 1340708 . G . . END=1340841 GT:DP:GQ:MIN_DP:PL 0:76:99:76:0,1800 +chrX 1340842 . C T, 2113.04 . AS_QUALapprox=|2123|0;AS_VarDP=0|67|0;DP=70;QUALapprox=2123;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,67,0:67:99:2123,0,2123:0,0,32,35 +chrX 1340843 . G . . END=1341115 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1800 +chrX 1341116 . A T, 1663.04 . AS_QUALapprox=|1673|0;AS_VarDP=0|49|0;DP=55;QUALapprox=1673;RAW_GT_COUNT=0,0,1;RAW_MQandDP=196386,55;VarDP=49 GT:AD:DP:GQ:PL:SB 1:0,49,0:49:99:1673,0,1673:0,0,19,30 +chrX 1341117 . C . . END=1341214 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1602 +chrX 1341215 . G A, 2113.04 . AS_QUALapprox=|2123|0;AS_VarDP=0|66|0;DP=69;QUALapprox=2123;RAW_GT_COUNT=0,0,1;RAW_MQandDP=245810,69;VarDP=66 GT:AD:DP:GQ:PL:SB 1:0,66,0:66:99:2123,0,2123:0,0,39,27 +chrX 1341216 . C . . END=1341254 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1800 +chrX 1341255 . A G, 3139.04 . AS_QUALapprox=|3149|0;AS_VarDP=0|75|0;DP=78;QUALapprox=3149;RAW_GT_COUNT=0,0,1;RAW_MQandDP=279874,78;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,75,0:75:99:3149,0,3149:0,0,42,33 +chrX 1341256 . T . . END=1341268 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1800 +chrX 1341269 . C T, 2881.04 . AS_QUALapprox=|2891|0;AS_VarDP=0|66|0;DP=70;QUALapprox=2891;RAW_GT_COUNT=0,0,1;RAW_MQandDP=251425,70;VarDP=66 GT:AD:DP:GQ:PL:SB 1:0,66,0:66:99:2891,0,2891:0,0,37,29 +chrX 1341270 . A . . END=1341300 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1800 +chrX 1341301 . GA G, 1277.01 . AS_QUALapprox=|1287|0;AS_VarDP=0|48|0;DP=70;QUALapprox=1287;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;VarDP=48 GT:AD:DP:GQ:PL:SB 1:0,48,0:48:99:1287,0,1287:0,0,24,24 +chrX 1341303 . A . . END=1341373 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1800 +chrX 1341374 . C CAT, 2897.01 . AS_QUALapprox=|2907|0;AS_VarDP=0|65|0;DP=67;QUALapprox=2907;RAW_GT_COUNT=0,0,1;RAW_MQandDP=240100,67;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,65,0:65:99:2907,0,2907:0,0,38,27 +chrX 1341375 . G . . END=1341380 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1800 +chrX 1341381 . GCA G, 2893.01 . AS_QUALapprox=|2903|0;AS_VarDP=0|65|0;DP=66;QUALapprox=2903;RAW_GT_COUNT=0,0,1;RAW_MQandDP=236500,66;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,65,0:65:99:2903,0,2903:0,0,38,27 +chrX 1341384 . C . . END=1341543 GT:DP:GQ:MIN_DP:PL 0:75:99:75:0,1800 +chrX 1341544 . A ACT, 3314.01 . AS_QUALapprox=|3324|0;AS_VarDP=0|74|0;DP=74;QUALapprox=3324;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,74,0:74:99:3324,0,3324:0,0,36,38 +chrX 1341545 . T . . END=1341545 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1800 +chrX 1341546 . G C, 3359.04 . AS_QUALapprox=|3369|0;AS_VarDP=0|75|0;DP=75;QUALapprox=3369;RAW_GT_COUNT=0,0,1;RAW_MQandDP=270000,75;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,75,0:75:99:3369,0,3369:0,0,37,38 +chrX 1341547 . T . . END=1341547 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1800 +chrX 1341548 . G A, 3389.04 . AS_QUALapprox=|3399|0;AS_VarDP=0|77|0;DP=77;QUALapprox=3399;RAW_GT_COUNT=0,0,1;RAW_MQandDP=277200,77;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,77,0:77:99:3399,0,3399:0,0,37,40 +chrX 1341549 . C . . END=1341552 GT:DP:GQ:MIN_DP:PL 0:73:99:73:0,1800 +chrX 1341553 . CATGT C, 3289.01 . AS_QUALapprox=|3299|0;AS_VarDP=0|75|0;DP=77;QUALapprox=3299;RAW_GT_COUNT=0,0,1;RAW_MQandDP=277200,77;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,75,0:75:99:3299,0,3299:0,0,35,40 +chrX 1341558 . G . . END=1341601 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1800 +chrX 1341602 . G . . END=1341602 GT:DP:GQ:MIN_DP:PL 0:73:9:73:0,9 +chrX 1341603 . C . . END=1341660 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1800 +chrX 1341661 . A G, 2124.04 . AS_QUALapprox=|2134|0;AS_VarDP=0|65|0;DP=69;QUALapprox=2134;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,65,0:65:99:2134,0,2134:0,0,38,27 +chrX 1341662 . T . . END=1341723 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1800 +chrX 1341724 . G C, 2135.04 . AS_QUALapprox=|2145|0;AS_VarDP=0|64|0;DP=67;QUALapprox=2145;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,64,0:64:99:2145,0,2145:0,0,33,31 +chrX 1341725 . C . . END=1341846 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1800 +chrX 1341847 . A G, 2255.04 . AS_QUALapprox=|2265|0;AS_VarDP=0|69|0;DP=69;QUALapprox=2265;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,69,0:69:99:2265,0,2265:0,0,29,40 +chrX 1341848 . A . . END=1341934 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1800 +chrX 1341935 . C T, 1795.04 . AS_QUALapprox=|1805|0;AS_VarDP=0|55|0;DP=60;QUALapprox=1805;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:1805,0,1805:0,0,26,29 +chrX 1341936 . A . . END=1342024 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1777 +chrX 1342025 . C T, 1835.04 . AS_QUALapprox=|1845|0;AS_VarDP=0|59|0;DP=61;QUALapprox=1845;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:1845,0,1845:0,0,24,35 +chrX 1342026 . G . . END=1342098 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1800 +chrX 1342099 . C T, 2224.04 . AS_QUALapprox=|2234|0;AS_VarDP=0|66|0;DP=69;QUALapprox=2234;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=66 GT:AD:DP:GQ:PL:SB 1:0,66,0:66:99:2234,0,2234:0,0,29,37 +chrX 1342100 . G . . END=1342165 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1800 +chrX 1342166 . C G, 1969.04 . AS_QUALapprox=|1979|0;AS_VarDP=0|62|0;DP=64;QUALapprox=1979;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:1979,0,1979:0,0,34,28 +chrX 1342167 . T . . END=1342190 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1800 +chrX 1342191 . G A, 2098.04 . AS_QUALapprox=|2108|0;AS_VarDP=0|64|0;DP=66;QUALapprox=2108;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,64,0:64:99:2108,0,2108:0,0,41,23 +chrX 1342192 . G . . END=1342322 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1797 +chrX 1342323 . A G, 1831.04 . AS_QUALapprox=|1841|0;AS_VarDP=0|56|0;DP=58;QUALapprox=1841;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208225,58;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,56,0:56:99:1841,0,1841:0,0,29,27 +chrX 1342324 . C . . END=1342892 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,685 +chrX 1342893 . G A, 1559.04 . AS_QUALapprox=|1569|0;AS_VarDP=0|47|0;DP=48;QUALapprox=1569;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172116,48;VarDP=47 GT:AD:DP:GQ:PL:SB 1:0,47,0:47:99:1569,0,1569:0,0,33,14 +chrX 1342894 . G . . END=1343856 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,526 +chrX 1343857 . A . . END=1343857 GT:DP:GQ:MIN_DP:PL 0:39:16:39:0,16 +chrX 1343858 . C . . END=1344130 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,278 +chrX 1344131 . G C, 0.50 . AS_QUALapprox=|9|0;AS_VarDP=30|31|0;BaseQRankSum=-0.314;DP=63;MQRankSum=0.000;QUALapprox=9;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;ReadPosRankSum=-0.152;VarDP=61 GT:AD:DP:GQ:PL:SB 1:30,31,0:61:9:9,0,1002:13,17,17,14 +chrX 1344132 . T . . END=1344656 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1330 +chrX 1344657 . T C, 35.04 . AS_QUALapprox=|45|0;AS_VarDP=23|24|0;BaseQRankSum=0.435;DP=50;MQRankSum=-0.936;QUALapprox=45;RAW_GT_COUNT=0,0,1;RAW_MQandDP=179536,50;ReadPosRankSum=0.192;VarDP=47 GT:AD:DP:GQ:PL:SB 1:23,24,0:47:45:45,0,784:13,10,11,13 +chrX 1344658 . A . . END=1345232 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,189 +chrX 1345233 . C A,CAA, 160.01 . AS_QUALapprox=|0|170|0;AS_VarDP=15|3|22|0;BaseQRankSum=-1.323;DP=47;MQRankSum=0.370;QUALapprox=170;RAW_GT_COUNT=0,0,1;RAW_MQandDP=166389,47;ReadPosRankSum=0.419;VarDP=40 GT:AD:DP:GQ:PL:SB 2:15,3,22,0:40:99:170,832,0,838:12,3,13,12 +chrX 1345234 . A . . END=1345290 GT:DP:GQ:MIN_DP:PL 0:45:99:45:0,1292 +chrX 1345291 . G T, 378.04 . AS_QUALapprox=|388|0;AS_VarDP=22|32|0;BaseQRankSum=1.319;DP=57;MQRankSum=0.000;QUALapprox=388;RAW_GT_COUNT=0,0,1;RAW_MQandDP=204964,57;ReadPosRankSum=-0.837;VarDP=54 GT:AD:DP:GQ:PL:SB 1:22,32,0:54:99:388,0,1042:15,7,17,15 +chrX 1345292 . A . . END=1346294 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,243 +chrX 1346295 . T C, 50.04 . AS_QUALapprox=|60|0;AS_VarDP=27|35|0;BaseQRankSum=-2.470;DP=68;MQRankSum=0.000;QUALapprox=60;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;ReadPosRankSum=0.398;VarDP=62 GT:AD:DP:GQ:PL:SB 1:27,35,0:62:60:60,0,948:16,11,15,20 +chrX 1346296 . G . . END=1347173 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,175 +chrX 1347174 . T C, 59.04 . AS_QUALapprox=|69|0;AS_VarDP=46|48|0;BaseQRankSum=0.147;DP=95;MQRankSum=-0.509;QUALapprox=69;RAW_GT_COUNT=0,0,1;RAW_MQandDP=337321,95;ReadPosRankSum=-0.620;VarDP=94 GT:AD:DP:GQ:PL:SB 1:46,48,0:94:69:69,0,1492:28,18,24,24 +chrX 1347175 . G . . END=1347586 GT:DP:GQ:MIN_DP:PL 0:77:45:77:0,45 +chrX 1347587 . C G, 51.04 . AS_QUALapprox=|61|0;AS_VarDP=34|33|0;BaseQRankSum=1.389;DP=68;MQRankSum=1.015;QUALapprox=61;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244336,68;ReadPosRankSum=-0.702;VarDP=67 GT:AD:DP:GQ:PL:SB 1:34,33,0:67:61:61,0,1057:13,21,14,19 +chrX 1347588 . T . . END=1347812 GT:DP:GQ:MIN_DP:PL 0:79:99:79:0,1594 +chrX 1347813 . T C, 140.04 . AS_QUALapprox=|150|0;AS_VarDP=25|29|0;BaseQRankSum=0.129;DP=57;MQRankSum=-0.437;QUALapprox=150;RAW_GT_COUNT=0,0,1;RAW_MQandDP=200240,57;ReadPosRankSum=0.535;VarDP=54 GT:AD:DP:GQ:PL:SB 1:25,29,0:54:99:150,0,948:12,13,18,11 +chrX 1347814 . G . . END=1347905 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1402 +chrX 1347906 . G A, 1898.04 . AS_QUALapprox=|1908|0;AS_VarDP=1|51|0;BaseQRankSum=2.313;DP=52;MQRankSum=-0.165;QUALapprox=1908;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183125,52;ReadPosRankSum=-0.067;VarDP=52 GT:AD:DP:GQ:PL:SB 1:1,51,0:52:99:1908,0,1917:0,1,24,27 +chrX 1347907 . G . . END=1348211 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,189 +chrX 1348212 . G T, 376.04 . AS_QUALapprox=|386|0;AS_VarDP=21|33|0;BaseQRankSum=-0.178;DP=56;MQRankSum=0.000;QUALapprox=386;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;ReadPosRankSum=0.985;VarDP=54 GT:AD:DP:GQ:PL:SB 1:21,33,0:54:99:386,0,1076:9,12,17,16 +chrX 1348213 . C . . END=1348325 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1567 +chrX 1348326 . G C, 2305.04 . AS_QUALapprox=|2315|0;AS_VarDP=0|76|0;DP=79;QUALapprox=2315;RAW_GT_COUNT=0,0,1;RAW_MQandDP=282400,79;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,76,0:76:99:2315,0,2315:0,0,30,46 +chrX 1348327 . T . . END=1348510 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,233 +chrX 1348511 . A C, 125.04 . AS_QUALapprox=|135|0;AS_VarDP=24|28|0;BaseQRankSum=0.574;DP=54;MQRankSum=0.000;QUALapprox=135;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;ReadPosRankSum=-0.514;VarDP=52 GT:AD:DP:GQ:PL:SB 1:24,28,0:52:99:135,0,928:16,8,12,16 +chrX 1348512 . C . . END=1348670 GT:DP:GQ:MIN_DP:PL 0:47:39:46:0,39 +chrX 1348671 . T . . END=1348676 GT:DP:GQ:MIN_DP:PL 0:45:0:45:0,0 +chrX 1348677 . T . . END=1348691 GT:DP:GQ:MIN_DP:PL 0:42:99:42:0,1179 +chrX 1348692 . T G, 249.04 . AS_QUALapprox=|259|0;AS_VarDP=18|24|0;BaseQRankSum=-0.412;DP=44;MQRankSum=-0.818;QUALapprox=259;RAW_GT_COUNT=0,0,1;RAW_MQandDP=152834,44;ReadPosRankSum=1.169;VarDP=42 GT:AD:DP:GQ:PL:SB 1:18,24,0:42:99:259,0,1069:6,12,10,14 +chrX 1348693 . T . . END=1348695 GT:DP:GQ:MIN_DP:PL 0:41:99:41:0,1294 +chrX 1348696 . CTTTCTTTCTG C, 163.01 . AS_QUALapprox=|173|0;AS_VarDP=21|25|0;BaseQRankSum=0.991;DP=48;MQRankSum=-0.873;QUALapprox=173;RAW_GT_COUNT=0,0,1;RAW_MQandDP=167234,48;ReadPosRankSum=0.743;VarDP=46 GT:AD:DP:GQ:PL:SB 1:21,25,0:46:99:173,0,1104:8,13,11,14 +chrX 1348707 . T . . END=1348731 GT:DP:GQ:MIN_DP:PL 0:39:99:39:0,1142 +chrX 1348732 . T TTC, 1783.01 . AS_QUALapprox=|1793|0;AS_VarDP=0|41|0;DP=42;QUALapprox=1793;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147770,42;VarDP=41 GT:AD:DP:GQ:PL:SB 1:0,41,0:41:99:1793,0,1793:0,0,20,21 +chrX 1348733 . T . . END=1348884 GT:DP:GQ:MIN_DP:PL 0:44:99:44:0,788 +chrX 1348885 . T TTTC, 2098.01 . AS_QUALapprox=|2108|0;AS_VarDP=0|47|0;DP=51;QUALapprox=2108;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=47 GT:AD:DP:GQ:PL:SB 1:0,47,0:47:99:2108,0,2108:0,0,25,22 +chrX 1348886 . T . . END=1349186 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1190 +chrX 1349187 . C CT, 1199.01 . AS_QUALapprox=|1209|0;AS_VarDP=1|46|0;BaseQRankSum=2.678;DP=58;MQRankSum=0.000;QUALapprox=1209;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;ReadPosRankSum=-0.922;VarDP=47 GT:AD:DP:GQ:PL:SB 1:1,46,0:47:99:1209,0,1215:1,0,21,25 +chrX 1349188 . T . . END=1349243 GT:DP:GQ:MIN_DP:PL 0:49:27:48:0,27 +chrX 1349244 . C T, 1985.04 . AS_QUALapprox=|1995|0;AS_VarDP=0|50|0;DP=52;QUALapprox=1995;RAW_GT_COUNT=0,0,1;RAW_MQandDP=182084,52;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,50,0:50:99:1995,0,1995:0,0,26,24 +chrX 1349245 . G . . END=1349356 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1612 +chrX 1349357 . T C, 2003.04 . AS_QUALapprox=|2013|0;AS_VarDP=2|65|0;BaseQRankSum=2.514;DP=69;MQRankSum=-0.088;QUALapprox=2013;RAW_GT_COUNT=0,0,1;RAW_MQandDP=246736,69;ReadPosRankSum=1.622;VarDP=67 GT:AD:DP:GQ:PL:SB 1:2,65,0:67:99:2013,0,2103:1,1,38,27 +chrX 1349358 . T . . END=1349625 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1791 +chrX 1349626 . T G, 134.04 . AS_QUALapprox=|144|0;AS_VarDP=29|32|0;BaseQRankSum=1.848;DP=66;MQRankSum=0.000;QUALapprox=144;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;ReadPosRankSum=1.496;VarDP=61 GT:AD:DP:GQ:PL:SB 1:29,32,0:61:99:144,0,1101:9,20,17,15 +chrX 1349627 . A . . END=1350199 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,407 +chrX 1350200 . A G, 124.04 . AS_QUALapprox=|134|0;AS_VarDP=27|34|0;BaseQRankSum=-0.561;DP=62;MQRankSum=1.250;QUALapprox=134;RAW_GT_COUNT=0,0,1;RAW_MQandDP=213273,62;ReadPosRankSum=1.365;VarDP=61 GT:AD:DP:GQ:PL:SB 1:27,34,0:61:99:134,0,1052:18,9,19,15 +chrX 1350201 . T . . END=1350224 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1800 +chrX 1350225 . C T, 1957.04 . AS_QUALapprox=|1967|0;AS_VarDP=3|55|0;BaseQRankSum=2.916;DP=60;MQRankSum=-0.565;QUALapprox=1967;RAW_GT_COUNT=0,0,1;RAW_MQandDP=206073,60;ReadPosRankSum=-0.358;VarDP=58 GT:AD:DP:GQ:PL:SB 1:3,55,0:58:99:1967,0,2011:3,0,30,25 +chrX 1350226 . G . . END=1350587 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,299 +chrX 1350588 . TA T, 2153.01 . AS_QUALapprox=|2163|0;AS_VarDP=0|54|0;DP=62;QUALapprox=2163;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=54 GT:AD:DP:GQ:PL:SB 1:0,54,0:54:99:2163,0,2163:0,0,32,22 +chrX 1350590 . A . . END=1350648 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1602 +chrX 1350649 . C G, 3213.04 . AS_QUALapprox=|3223|0;AS_VarDP=0|72|0;DP=73;QUALapprox=3223;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259214,73;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,72,0:72:99:3223,0,3223:0,0,44,28 +chrX 1350650 . C . . END=1350671 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1800 +chrX 1350672 . T C, 3275.04 . AS_QUALapprox=|3285|0;AS_VarDP=0|73|0;DP=74;QUALapprox=3285;RAW_GT_COUNT=0,0,1;RAW_MQandDP=260814,74;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,73,0:73:99:3285,0,3285:0,0,42,31 +chrX 1350673 . G . . END=1350681 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1800 +chrX 1350682 . G A, 3200.04 . AS_QUALapprox=|3210|0;AS_VarDP=0|72|0;DP=74;QUALapprox=3210;RAW_GT_COUNT=0,0,1;RAW_MQandDP=260814,74;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,72,0:72:99:3210,0,3210:0,0,43,29 +chrX 1350683 . C . . END=1350776 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1609 +chrX 1350777 . C T, 1554.04 . AS_QUALapprox=|1564|0;AS_VarDP=0|47|0;DP=48;QUALapprox=1564;RAW_GT_COUNT=0,0,1;RAW_MQandDP=168449,48;VarDP=47 GT:AD:DP:GQ:PL:SB 1:0,47,0:47:99:1564,0,1564:0,0,27,20 +chrX 1350778 . A . . END=1350889 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1485 +chrX 1350890 . A AGACAAAC, 2408.01 . AS_QUALapprox=|2418|0;AS_VarDP=0|54|0;DP=61;QUALapprox=2418;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216625,61;VarDP=54 GT:AD:DP:GQ:PL:SB 1:0,54,0:54:99:2418,0,2419:0,0,23,31 +chrX 1350891 . A . . END=1351000 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1574 +chrX 1351001 . A G, 2004.04 . AS_QUALapprox=|2014|0;AS_VarDP=0|61|0;DP=62;QUALapprox=2014;RAW_GT_COUNT=0,0,1;RAW_MQandDP=214769,62;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,61,0:61:99:2014,0,2014:0,0,29,32 +chrX 1351002 . T . . END=1351078 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1667 +chrX 1351079 . T C, 1685.04 . AS_QUALapprox=|1695|0;AS_VarDP=0|54|0;DP=55;QUALapprox=1695;RAW_GT_COUNT=0,0,1;RAW_MQandDP=196020,55;VarDP=54 GT:AD:DP:GQ:PL:SB 1:0,54,0:54:99:1695,0,1695:0,0,29,25 +chrX 1351080 . G . . END=1351137 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1549 +chrX 1351138 . T C, 1926.04 . AS_QUALapprox=|1936|0;AS_VarDP=0|59|0;DP=59;QUALapprox=1936;RAW_GT_COUNT=0,0,1;RAW_MQandDP=209825,59;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:1936,0,1936:0,0,28,31 +chrX 1351139 . G . . END=1351181 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1800 +chrX 1351182 . A G, 2254.04 . AS_QUALapprox=|2264|0;AS_VarDP=0|66|0;DP=69;QUALapprox=2264;RAW_GT_COUNT=0,0,1;RAW_MQandDP=245825,69;VarDP=66 GT:AD:DP:GQ:PL:SB 1:0,66,0:66:99:2264,0,2264:0,0,30,36 +chrX 1351183 . G . . END=1351338 GT:DP:GQ:MIN_DP:PL 0:72:43:67:0,43 +chrX 1351339 . T TA, 2473.01 . AS_QUALapprox=|2483|0;AS_VarDP=0|65|0;DP=68;QUALapprox=2483;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,65,0:65:99:2483,0,2483:0,0,39,26 +chrX 1351340 . T . . END=1352043 GT:DP:GQ:MIN_DP:PL 0:70:64:61:0,64 +chrX 1352044 . C T, 35.04 . AS_QUALapprox=|45|0;AS_VarDP=35|36|0;BaseQRankSum=0.369;DP=73;MQRankSum=0.020;QUALapprox=45;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259565,73;ReadPosRankSum=-1.335;VarDP=71 GT:AD:DP:GQ:PL:SB 1:35,36,0:71:45:45,0,1191:16,19,21,15 +chrX 1352045 . G . . END=1352244 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1800 +chrX 1352245 . G T, 2058.04 . AS_QUALapprox=|2068|0;AS_VarDP=0|64|0;DP=67;QUALapprox=2068;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,64,0:64:99:2068,0,2474:0,0,28,34 +chrX 1352246 . T . . END=1352648 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1735 +chrX 1352649 . C G, 1954.04 . AS_QUALapprox=|1964|0;AS_VarDP=0|57|0;DP=57;QUALapprox=1964;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:1964,0,1964:0,0,28,29 +chrX 1352650 . G . . END=1352723 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1759 +chrX 1352724 . C T, 2749.04 . AS_QUALapprox=|2759|0;AS_VarDP=0|62|0;DP=63;QUALapprox=2759;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:2759,0,2759:0,0,36,26 +chrX 1352725 . G . . END=1352730 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1800 +chrX 1352731 . T G, 2809.04 . AS_QUALapprox=|2819|0;AS_VarDP=0|64|0;DP=65;QUALapprox=2819;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,64,0:64:99:2819,0,2819:0,0,39,25 +chrX 1352732 . A . . END=1352820 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1800 +chrX 1352821 . C T, 2582.04 . AS_QUALapprox=|2592|0;AS_VarDP=0|66|0;DP=66;QUALapprox=2592;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=66 GT:AD:DP:GQ:PL:SB 1:0,66,0:66:99:2592,0,2592:0,0,39,27 +chrX 1352822 . C . . END=1352879 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,105 +chrX 1352880 . AATCCCCCATGATGGGTTTCATCATGAGTCATAGAACCCCCTATCATGGATTCCATCATGGGTCATGGGAACCCCCATCATGGGTCCCATCATGGTTCATAGG A, 2089.01 . AS_QUALapprox=|2099|0;AS_VarDP=0|54|0;DP=55;QUALapprox=2099;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183004,55;VarDP=54 GT:AD:DP:GQ:PL:SB 1:0,54,0:54:99:2099,0,2099:0,0,25,29 +chrX 1352983 . A . . END=1353262 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,181 +chrX 1353263 . T TCATCATGGGTTCCACCATGAGTCATGGGATCCCC, 1993.01 . AS_QUALapprox=|2003|0;AS_VarDP=0|50|0;DP=51;QUALapprox=2003;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176603,51;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,50,0:50:99:2003,0,2003:0,0,24,26 +chrX 1353264 . T . . END=1353325 GT:DP:GQ:MIN_DP:PL 0:39:99:39:0,1052 +chrX 1353326 . AC A, 1036.01 . AS_QUALapprox=|1046|0;AS_VarDP=0|42|0;DP=49;QUALapprox=1046;RAW_GT_COUNT=0,0,1;RAW_MQandDP=174321,49;VarDP=42 GT:AD:DP:GQ:PL:SB 1:0,42,0:42:99:1046,0,1046:0,0,15,27 +chrX 1353328 . C . . END=1353605 GT:DP:GQ:MIN_DP:PL 0:52:29:42:0,29 +chrX 1353606 . A . . END=1353606 GT:DP:GQ:MIN_DP:PL 0:29:0:29:0,0 +chrX 1353607 . G . . END=1353609 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,699 +chrX 1353610 . C . . END=1353610 GT:DP:GQ:MIN_DP:PL 0:28:0:28:0,0 +chrX 1353611 . C . . END=1353624 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,495 +chrX 1353625 . G . . END=1353625 GT:DP:GQ:MIN_DP:PL 0:23:0:23:0,0 +chrX 1353626 . G . . END=1353628 GT:DP:GQ:MIN_DP:PL 0:24:90:24:0,90 +chrX 1353629 . C . . END=1353629 GT:DP:GQ:MIN_DP:PL 0:24:0:24:0,0 +chrX 1353630 . C . . END=1353641 GT:DP:GQ:MIN_DP:PL 0:20:99:20:0,154 +chrX 1353642 . G . . END=1353642 GT:DP:GQ:MIN_DP:PL 0:15:0:15:0,0 +chrX 1353643 . G . . END=1353645 GT:DP:GQ:MIN_DP:PL 0:14:99:14:0,229 +chrX 1353646 . T . . END=1353646 GT:DP:GQ:MIN_DP:PL 0:13:0:13:0,0 +chrX 1353647 . C . . END=1353652 GT:DP:GQ:MIN_DP:PL 0:14:99:14:0,318 +chrX 1353653 . C . . END=1353653 GT:DP:GQ:MIN_DP:PL 0:10:0:10:0,0 +chrX 1353654 . G . . END=1353942 GT:DP:GQ:MIN_DP:PL 0:57:22:36:0,22 +chrX 1353943 . A ACC, 67.01 . AS_QUALapprox=|77|0;AS_VarDP=3|4|0;BaseQRankSum=0.566;DP=33;MQRankSum=0.792;QUALapprox=77;RAW_GT_COUNT=0,0,1;RAW_MQandDP=113949,33;ReadPosRankSum=1.006;VarDP=7 GT:AD:DP:GQ:PL:SB 1:3,4,0:7:77:77,0,146:2,1,2,2 +chrX 1353944 . C . . END=1353964 GT:DP:GQ:MIN_DP:PL 0:25:64:25:0,64 +chrX 1353965 . G A, 604.04 . AS_QUALapprox=|844|0;AS_VarDP=0|22|0;DP=30;QUALapprox=844;RAW_GT_COUNT=0,0,1;RAW_MQandDP=107104,30;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:844,0,723:0,0,4,10 +chrX 1353966 . T . . END=1353969 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,222 +chrX 1353970 . A AC, 99.01 . AS_QUALapprox=|109|0;AS_VarDP=7|12|0;BaseQRankSum=-0.854;DP=31;MQRankSum=-0.333;QUALapprox=109;RAW_GT_COUNT=0,0,1;RAW_MQandDP=110020,31;ReadPosRankSum=1.374;VarDP=19 GT:AD:DP:GQ:PL:SB 1:7,12,0:19:99:109,0,369:1,2,3,9 +chrX 1353971 . C . . END=1353975 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,311 +chrX 1353976 . A C, 628.04 . AS_QUALapprox=|889|0;AS_VarDP=0|23|0;DP=35;QUALapprox=889;RAW_GT_COUNT=0,0,1;RAW_MQandDP=124420,35;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:889,0,759:0,0,4,11 +chrX 1353977 . C . . END=1354353 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,1071 +chrX 1354354 . G A, 1416.04 . AS_QUALapprox=|1426|0;AS_VarDP=0|45|0;DP=50;QUALapprox=1426;RAW_GT_COUNT=0,0,1;RAW_MQandDP=179001,50;VarDP=45 GT:AD:DP:GQ:PL:SB 1:0,45,0:45:99:1426,0,1426:0,0,23,22 +chrX 1354355 . A . . END=1354392 GT:DP:GQ:MIN_DP:PL 0:44:99:44:0,1282 +chrX 1354393 . A C, 1290.04 . AS_QUALapprox=|1300|0;AS_VarDP=0|41|0;DP=44;QUALapprox=1300;RAW_GT_COUNT=0,0,1;RAW_MQandDP=157401,44;VarDP=41 GT:AD:DP:GQ:PL:SB 1:0,41,0:41:99:1300,0,1300:0,0,22,19 +chrX 1354394 . G . . END=1354507 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,651 +chrX 1354508 . A G, 853.04 . AS_QUALapprox=|863|0;AS_VarDP=0|26|0;DP=32;QUALapprox=863;RAW_GT_COUNT=0,0,1;RAW_MQandDP=113364,32;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:863,0,863:0,0,17,9 +chrX 1354509 . A . . END=1354640 GT:DP:GQ:MIN_DP:PL 0:9:35:7:0,35 +chrX 1354641 . A G, 101.04 . AS_QUALapprox=|111|0;AS_VarDP=0|4|0;DP=11;QUALapprox=111;RAW_GT_COUNT=0,0,1;RAW_MQandDP=38704,11;VarDP=4 GT:AD:DP:GQ:PL:SB 1:0,4,0:4:99:111,0,111:0,0,4,0 +chrX 1354642 . G . . END=1354977 GT:DP:GQ:MIN_DP:PL 0:11:35:9:0,35 +chrX 1354978 . A AAGGTGG, 80.01 . AS_QUALapprox=|90|0;AS_VarDP=0|2|0;DP=10;QUALapprox=90;RAW_GT_COUNT=0,0,1;RAW_MQandDP=35881,10;VarDP=2 GT:AD:DP:GQ:PL:SB 1:0,2,0:2:90:90,0,90:0,0,2,0 +chrX 1354979 . A . . END=1354994 GT:DP:GQ:MIN_DP:PL 0:2:35:1:0,35 +chrX 1354995 . AGAG A, 125.01 . AS_QUALapprox=|135|0;AS_VarDP=0|3|0;DP=6;QUALapprox=135;RAW_GT_COUNT=0,0,1;RAW_MQandDP=21600,6;VarDP=3 GT:AD:DP:GQ:PL:SB 1:0,3,0:3:99:135,0,135:0,0,3,0 +chrX 1354999 . G . . END=1355019 GT:DP:GQ:MIN_DP:PL 0:4:70:4:0,70 +chrX 1355020 . AG A, 210.01 . AS_QUALapprox=|220|0;AS_VarDP=0|6|0;DP=13;QUALapprox=220;RAW_GT_COUNT=0,0,1;RAW_MQandDP=43010,13;VarDP=6 GT:AD:DP:GQ:PL:SB 1:0,6,0:6:99:220,0,220:0,0,3,3 +chrX 1355022 . G . . END=1355079 GT:DP:GQ:MIN_DP:PL 0:9:70:9:0,70 +chrX 1355080 . A AAGG, 260.01 . AS_QUALapprox=|270|0;AS_VarDP=0|6|0;DP=15;QUALapprox=270;RAW_GT_COUNT=0,0,1;RAW_MQandDP=49828,15;VarDP=6 GT:AD:DP:GQ:PL:SB 1:0,6,0:6:99:270,0,270:0,0,5,1 +chrX 1355081 . A . . END=1355111 GT:DP:GQ:MIN_DP:PL 0:6:99:6:0,109 +chrX 1355112 . AGAG A, 35.01 . AS_QUALapprox=|45|0;AS_VarDP=1|2|0;BaseQRankSum=0.000;DP=13;MQRankSum=0.000;QUALapprox=45;RAW_GT_COUNT=0,0,1;RAW_MQandDP=43465,13;ReadPosRankSum=0.000;VarDP=3 GT:AD:DP:GQ:PL:SB 1:1,2,0:3:45:45,0,90:1,0,2,0 +chrX 1355116 . G . . END=1355655 GT:DP:GQ:MIN_DP:PL 0:21:45:21:0,45 +chrX 1355656 . G T, 1495.04 . AS_QUALapprox=|1505|0;AS_VarDP=4|49|0;BaseQRankSum=3.878;DP=56;MQRankSum=0.000;QUALapprox=1505;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;ReadPosRankSum=-0.573;VarDP=53 GT:AD:DP:GQ:PL:SB 1:4,49,0:53:99:1505,0,1543:1,3,32,17 +chrX 1355657 . G . . END=1356185 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1459 +chrX 1356186 . CTCCTAAA C, 210.01 . AS_QUALapprox=|220|0;AS_VarDP=33|37|0;BaseQRankSum=-0.360;DP=78;MQRankSum=0.000;QUALapprox=220;RAW_GT_COUNT=0,0,1;RAW_MQandDP=280800,78;ReadPosRankSum=1.206;VarDP=70 GT:AD:DP:GQ:PL:SB 1:33,37,0:70:99:220,0,1653:15,18,19,18 +chrX 1356194 . T . . END=1356427 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,822 +chrX 1356428 . A G, 115.04 . AS_QUALapprox=|125|0;AS_VarDP=21|23|0;BaseQRankSum=1.894;DP=46;MQRankSum=1.530;QUALapprox=125;RAW_GT_COUNT=0,0,1;RAW_MQandDP=164450,46;ReadPosRankSum=0.576;VarDP=44 GT:AD:DP:GQ:PL:SB 1:21,23,0:44:99:125,0,790:6,15,11,12 +chrX 1356429 . T . . END=1356784 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,149 +chrX 1356785 . A C, 2481.04 . AS_QUALapprox=|2491|0;AS_VarDP=0|78|0;DP=81;QUALapprox=2491;RAW_GT_COUNT=0,0,1;RAW_MQandDP=287595,81;VarDP=78 GT:AD:DP:GQ:PL:SB 1:0,78,0:78:99:2491,0,2491:0,0,34,44 +chrX 1356786 . A . . END=1356996 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1702 +chrX 1356997 . A G, 1771.04 . AS_QUALapprox=|1781|0;AS_VarDP=0|55|0;DP=62;QUALapprox=1781;RAW_GT_COUNT=0,0,1;RAW_MQandDP=220938,62;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:1781,0,1781:0,0,35,20 +chrX 1356998 . C . . END=1357010 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1800 +chrX 1357011 . G A, 1861.04 . AS_QUALapprox=|1871|0;AS_VarDP=0|57|0;DP=63;QUALapprox=1871;RAW_GT_COUNT=0,0,1;RAW_MQandDP=224538,63;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:1871,0,1871:0,0,36,21 +chrX 1357012 . C . . END=1357572 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1546 +chrX 1357573 . T C, 1521.04 . AS_QUALapprox=|1531|0;AS_VarDP=0|50|0;DP=52;QUALapprox=1531;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183536,52;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,50,0:50:99:1531,0,1531:0,0,22,28 +chrX 1357574 . G . . END=1357678 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1568 +chrX 1357679 . G A, 1701.04 . AS_QUALapprox=|1711|0;AS_VarDP=0|56|0;DP=60;QUALapprox=1711;RAW_GT_COUNT=0,0,1;RAW_MQandDP=214961,60;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,56,0:56:99:1711,0,1711:0,0,19,37 +chrX 1357680 . C . . END=1359574 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1003 +chrX 1359575 . T C, 1221.04 . AS_QUALapprox=|1231|0;AS_VarDP=0|36|0;DP=37;QUALapprox=1231;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133200,37;VarDP=36 GT:AD:DP:GQ:PL:SB 1:0,36,0:36:99:1231,0,1231:0,0,17,19 +chrX 1359576 . C . . END=1360030 GT:DP:GQ:MIN_DP:PL 0:42:99:42:0,104 +chrX 1360031 . ATC A, 1320.01 . AS_QUALapprox=|1330|0;AS_VarDP=0|30|0;DP=38;QUALapprox=1330;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136336,38;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:1330,0,1330:0,0,22,8 +chrX 1360034 . T . . END=1360056 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,793 +chrX 1360057 . A G, 1484.04 . AS_QUALapprox=|1494|0;AS_VarDP=0|37|0;DP=37;QUALapprox=1494;RAW_GT_COUNT=0,0,1;RAW_MQandDP=132385,37;VarDP=37 GT:AD:DP:GQ:PL:SB 1:0,37,0:37:99:1494,0,1494:0,0,27,10 +chrX 1360058 . T . . END=1360138 GT:DP:GQ:MIN_DP:PL 0:39:99:39:0,467 +chrX 1360139 . G A, 1200.04 . AS_QUALapprox=|1210|0;AS_VarDP=0|44|0;DP=48;QUALapprox=1210;RAW_GT_COUNT=0,0,1;RAW_MQandDP=170404,48;VarDP=44 GT:AD:DP:GQ:PL:SB 1:0,44,0:44:99:1210,0,1210:0,0,28,16 +chrX 1360140 . T . . END=1360219 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,899 +chrX 1360220 . TTCTCTGTGTCTGTCTCTGTATCTCTCTCCCTTTCTCCCTCCATCTTTCTCTCTCTCTCCTGGTCTCTATCTCCCCCTCTCCCTGTC T, 1717.01 . AS_QUALapprox=|1727|0;AS_VarDP=0|39|0;DP=61;QUALapprox=1727;RAW_GT_COUNT=0,0,1;RAW_MQandDP=202543,61;VarDP=39 GT:AD:DP:GQ:PL:SB 1:0,39,0:39:99:1727,0,1727:0,0,19,20 +chrX 1360307 . T . . END=1361201 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,263 +chrX 1361202 . C CCTCT, 752.01 . AS_QUALapprox=|762|0;AS_VarDP=22|39|0;BaseQRankSum=-0.533;DP=61;MQRankSum=-1.456;QUALapprox=762;RAW_GT_COUNT=0,0,1;RAW_MQandDP=196056,61;ReadPosRankSum=-1.412;VarDP=61 GT:AD:DP:GQ:PL:SB 1:22,39,0:61:99:762,0,1716:13,9,21,18 +chrX 1361203 . C . . END=1361754 GT:DP:GQ:MIN_DP:PL 0:63:47:49:0,47 +chrX 1361755 . GAA G,GA, 369.01 . AS_QUALapprox=|198|379|0;AS_VarDP=1|12|14|0;DP=55;MQRankSum=0.000;QUALapprox=379;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187357,55;VarDP=27 GT:AD:DP:GQ:PL:SB 2:1,12,14,0:27:99:379,181,0,416:0,1,15,11 +chrX 1361758 . A . . END=1362415 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,128 +chrX 1362416 . T . . END=1362416 GT:DP:GQ:MIN_DP:PL 0:60:0:60:0,0 +chrX 1362417 . C . . END=1362689 GT:DP:GQ:MIN_DP:PL 0:80:99:80:0,363 +chrX 1362690 . G A, 5.04 . AS_QUALapprox=|15|0;AS_VarDP=41|42|0;BaseQRankSum=0.180;DP=85;MQRankSum=0.000;QUALapprox=15;RAW_GT_COUNT=0,0,1;RAW_MQandDP=306000,85;ReadPosRankSum=-1.385;VarDP=83 GT:AD:DP:GQ:PL:SB 1:41,42,0:83:15:15,0,1314:18,23,19,23 +chrX 1362691 . T . . END=1364199 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,124 +chrX 1364200 . A T, 202.04 . AS_QUALapprox=|212|0;AS_VarDP=23|30|0;BaseQRankSum=-0.749;DP=54;MQRankSum=-0.381;QUALapprox=212;RAW_GT_COUNT=0,0,1;RAW_MQandDP=191585,54;ReadPosRankSum=0.314;VarDP=53 GT:AD:DP:GQ:PL:SB 1:23,30,0:53:99:212,0,909:11,12,16,14 +chrX 1364201 . T . . END=1364796 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1611 +chrX 1364797 . T A, 2488.04 . AS_QUALapprox=|2498|0;AS_VarDP=0|57|0;DP=61;QUALapprox=2498;RAW_GT_COUNT=0,0,1;RAW_MQandDP=217189,61;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:2498,0,2498:0,0,23,34 +chrX 1364798 . A T, 2488.04 . AS_QUALapprox=|2498|0;AS_VarDP=0|57|0;DP=60;QUALapprox=2498;RAW_GT_COUNT=0,0,1;RAW_MQandDP=213589,60;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:2498,0,2498:0,0,23,34 +chrX 1364799 . T . . END=1365291 GT:DP:GQ:MIN_DP:PL 0:76:99:76:0,1453 +chrX 1365292 . A . . END=1365292 GT:DP:GQ:MIN_DP:PL 0:51:0:51:0,0 +chrX 1365293 . G . . END=1365300 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1120 +chrX 1365301 . C . . END=1365301 GT:DP:GQ:MIN_DP:PL 0:45:0:45:0,0 +chrX 1365302 . G . . END=1365962 GT:DP:GQ:MIN_DP:PL 0:6:39:4:0,39 +chrX 1365963 . A . . END=1365963 GT:DP:GQ:MIN_DP:PL 0:5:4:5:0,4 +chrX 1365964 . G . . END=1366102 GT:DP:GQ:MIN_DP:PL 0:7:35:5:0,35 +chrX 1366103 . C . . END=1366103 GT:DP:GQ:MIN_DP:PL 0:4:0:4:0,0 +chrX 1366104 . G . . END=1366169 GT:DP:GQ:MIN_DP:PL 0:9:84:9:0,84 +chrX 1366170 . A . . END=1366170 GT:DP:GQ:MIN_DP:PL 0:4:10:4:0,10 +chrX 1366171 . G . . END=1366421 GT:DP:GQ:MIN_DP:PL 0:6:24:3:0,24 +chrX 1366422 . C . . END=1366422 GT:DP:GQ:MIN_DP:PL 0:4:0:4:0,0 +chrX 1366423 . G . . END=1366451 GT:DP:GQ:MIN_DP:PL 0:10:99:10:0,119 +chrX 1366452 . C . . END=1366452 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 1366453 . G . . END=1366748 GT:DP:GQ:MIN_DP:PL 0:4:20:1:0,20 +chrX 1366749 . C . . END=1366749 GT:DP:GQ:MIN_DP:PL 0:6:0:6:0,0 +chrX 1366750 . G . . END=1366806 GT:DP:GQ:MIN_DP:PL 0:8:74:8:0,74 +chrX 1366807 . C . . END=1366807 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1366808 . G . . END=1366899 GT:DP:GQ:MIN_DP:PL 0:6:35:3:0,35 +chrX 1366900 . C . . END=1366900 GT:DP:GQ:MIN_DP:PL 0:5:0:5:0,0 +chrX 1366901 . G . . END=1367022 GT:DP:GQ:MIN_DP:PL 0:8:49:8:0,49 +chrX 1367023 . C . . END=1367023 GT:DP:GQ:MIN_DP:PL 0:3:0:3:0,0 +chrX 1367024 . G . . END=1367094 GT:DP:GQ:MIN_DP:PL 0:6:59:6:0,59 +chrX 1367095 . A . . END=1367095 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 1367096 . G . . END=1367097 GT:DP:GQ:MIN_DP:PL 0:3:70:3:0,70 +chrX 1367098 . C . . END=1367098 GT:DP:GQ:MIN_DP:PL 0:3:0:3:0,0 +chrX 1367099 . G . . END=1367103 GT:DP:GQ:MIN_DP:PL 0:5:88:5:0,88 +chrX 1367104 . C . . END=1367104 GT:DP:GQ:MIN_DP:PL 0:3:15:3:0,15 +chrX 1367105 . G . . END=1367265 GT:DP:GQ:MIN_DP:PL 0:4:25:2:0,25 +chrX 1367266 . A . . END=1367266 GT:DP:GQ:MIN_DP:PL 0:5:0:5:0,0 +chrX 1367267 . G . . END=1367571 GT:DP:GQ:MIN_DP:PL 0:12:49:12:0,49 +chrX 1367572 . C A, 49.04 . AS_QUALapprox=|59|0;AS_VarDP=9|10|0;BaseQRankSum=-0.159;DP=19;MQRankSum=1.015;QUALapprox=59;RAW_GT_COUNT=0,0,1;RAW_MQandDP=45348,19;ReadPosRankSum=-0.613;VarDP=19 GT:AD:DP:GQ:PL:SB 1:9,10,0:19:59:59,0,317:3,6,7,3 +chrX 1367573 . G . . END=1368250 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,228 +chrX 1368251 . G A, 22.04 . AS_QUALapprox=|32|0;AS_VarDP=32|33|0;BaseQRankSum=0.069;DP=65;MQRankSum=-0.954;QUALapprox=32;RAW_GT_COUNT=0,0,1;RAW_MQandDP=233316,65;ReadPosRankSum=-2.140;VarDP=65 GT:AD:DP:GQ:PL:SB 1:32,33,0:65:32:32,0,1089:13,19,15,18 +chrX 1368252 . A . . END=1368744 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1022 +chrX 1368745 . G A, 67.04 . AS_QUALapprox=|77|0;AS_VarDP=15|16|0;BaseQRankSum=-1.486;DP=32;MQRankSum=0.208;QUALapprox=77;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86022,32;ReadPosRankSum=-0.693;VarDP=31 GT:AD:DP:GQ:PL:SB 1:15,16,0:31:77:77,0,565:5,10,5,11 +chrX 1368746 . G . . END=1369016 GT:DP:GQ:MIN_DP:PL 0:9:59:9:0,59 +chrX 1369017 . A . . END=1369017 GT:DP:GQ:MIN_DP:PL 0:9:15:9:0,15 +chrX 1369018 . G . . END=1369034 GT:DP:GQ:MIN_DP:PL 0:10:99:10:0,293 +chrX 1369035 . G . . END=1369035 GT:DP:GQ:MIN_DP:PL 0:10:0:10:0,0 +chrX 1369036 . C . . END=1369194 GT:DP:GQ:MIN_DP:PL 0:4:35:1:0,35 +chrX 1369195 . C . . END=1369332 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1369333 . G . . END=1369506 GT:DP:GQ:MIN_DP:PL 0:3:35:1:0,35 +chrX 1369507 . T . . END=1369539 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1369540 . G . . END=1370013 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 1370014 . C . . END=1370014 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1370015 . T . . END=1370018 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1370019 . G . . END=1370019 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 1370020 . T . . END=1370020 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 1370021 . A . . END=1370021 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1370022 . T . . END=1370028 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1370029 . A . . END=1370029 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 1370030 . C . . END=1370059 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 1370060 . T . . END=1370060 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 1370061 . A . . END=1370341 GT:DP:GQ:MIN_DP:PL 0:3:25:1:0,25 +chrX 1370342 . C . . END=1370343 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1370344 . G . . END=1370351 GT:DP:GQ:MIN_DP:PL 0:2:45:2:0,45 +chrX 1370352 . A . . END=1370352 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 1370353 . C . . END=1370647 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1370648 . T . . END=1370648 GT:DP:GQ:MIN_DP:PL 0:2:10:2:0,10 +chrX 1370649 . C . . END=1371159 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 1371160 . T . . END=1373073 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1373074 . A . . END=1373205 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1373206 . C . . END=1373206 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1373207 . C . . END=1373232 GT:DP:GQ:MIN_DP:PL 0:2:35:1:0,35 +chrX 1373233 . G . . END=1373234 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1373235 . C . . END=1373238 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1373239 . G . . END=1373240 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 1373241 . G . . END=1373242 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1373243 . G . . END=1373243 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 1373244 . A . . END=1373246 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1373247 . C . . END=1373248 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1373249 . A . . END=1373282 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1373283 . A . . END=1373283 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1373284 . T . . END=1373285 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 1373286 . C . . END=1373286 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1373287 . T . . END=1374957 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1374958 . A . . END=1375059 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1375060 . C . . END=1375249 GT:DP:GQ:MIN_DP:PL 0:2:20:1:0,20 +chrX 1375250 . C . . END=1375252 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1375253 . G . . END=1375253 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 1375254 . G . . END=1375254 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1375255 . T . . END=1375260 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1375261 . A . . END=1375355 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1375356 . T . . END=1375405 GT:DP:GQ:MIN_DP:PL 0:1:20:1:0,20 +chrX 1375406 . C . . END=1375406 GT:DP:GQ:MIN_DP:PL 0:4:19:4:0,19 +chrX 1375407 . T . . END=1375418 GT:DP:GQ:MIN_DP:PL 0:4:70:4:0,70 +chrX 1375419 . T . . END=1375419 GT:DP:GQ:MIN_DP:PL 0:3:0:3:0,0 +chrX 1375420 . A . . END=1375524 GT:DP:GQ:MIN_DP:PL 0:3:35:1:0,35 +chrX 1375525 . C . . END=1375871 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1375872 . C . . END=1375952 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 1375953 . G . . END=1375953 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1375954 . G . . END=1375990 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1375991 . G . . END=1375991 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1375992 . C . . END=1376129 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1376130 . C T, 105.04 . AS_QUALapprox=|115|0;AS_VarDP=0|4|0;DP=4;QUALapprox=115;RAW_GT_COUNT=0,0,1;RAW_MQandDP=2304,4;VarDP=4 GT:AD:DP:GQ:PL:SB 1:0,4,0:4:99:115,0,115:0,0,4,0 +chrX 1376131 . A . . END=1376672 GT:DP:GQ:MIN_DP:PL 0:13:63:13:0,63 +chrX 1376673 . A . . END=1376673 GT:DP:GQ:MIN_DP:PL 0:64:0:64:0,0 +chrX 1376674 . G . . END=1376962 GT:DP:GQ:MIN_DP:PL 0:43:38:25:0,38 +chrX 1376963 . G A, 121.04 . AS_QUALapprox=|131|0;AS_VarDP=22|25|0;BaseQRankSum=0.593;DP=49;MQRankSum=-0.590;QUALapprox=131;RAW_GT_COUNT=0,0,1;RAW_MQandDP=87503,49;ReadPosRankSum=-0.143;VarDP=47 GT:AD:DP:GQ:PL:SB 1:22,25,0:47:99:131,0,1033:13,9,15,10 +chrX 1376964 . C . . END=1377061 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1539 +chrX 1377062 . G C, 0.01 . AS_QUALapprox=|2|0;AS_VarDP=29|34|0;BaseQRankSum=0.065;DP=64;MQRankSum=-3.945;QUALapprox=2;RAW_GT_COUNT=0,0,1;RAW_MQandDP=177763,64;ReadPosRankSum=-1.593;VarDP=63 GT:AD:DP:GQ:PL:SB 1:29,34,0:63:2:2,0,989:19,10,20,14 +chrX 1377063 . A . . END=1377104 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1800 +chrX 1377105 . C CAG, 165.01 . AS_QUALapprox=|175|0;AS_VarDP=30|35|0;BaseQRankSum=0.128;DP=72;MQRankSum=-2.968;QUALapprox=175;RAW_GT_COUNT=0,0,1;RAW_MQandDP=233015,72;ReadPosRankSum=0.480;VarDP=65 GT:AD:DP:GQ:PL:SB 1:30,35,0:65:99:175,0,1495:19,11,15,20 +chrX 1377106 . G . . END=1377286 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1719 +chrX 1377287 . C G, 204.04 . AS_QUALapprox=|214|0;AS_VarDP=27|32|0;BaseQRankSum=1.783;DP=62;MQRankSum=-0.885;QUALapprox=214;RAW_GT_COUNT=0,0,1;RAW_MQandDP=222516,62;ReadPosRankSum=-0.312;VarDP=59 GT:AD:DP:GQ:PL:SB 1:27,32,0:59:99:214,0,1092:15,12,17,15 +chrX 1377288 . T . . END=1377632 GT:DP:GQ:MIN_DP:PL 0:68:35:64:0,35 +chrX 1377633 . G A, 124.04 . AS_QUALapprox=|134|0;AS_VarDP=27|30|0;BaseQRankSum=1.204;DP=61;MQRankSum=0.000;QUALapprox=134;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;ReadPosRankSum=0.632;VarDP=57 GT:AD:DP:GQ:PL:SB 1:27,30,0:57:99:134,0,1003:10,17,11,19 +chrX 1377634 . T . . END=1377727 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,784 +chrX 1377728 . C G, 86.04 . AS_QUALapprox=|96|0;AS_VarDP=16|18|0;BaseQRankSum=3.117;DP=36;MQRankSum=0.000;QUALapprox=96;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129600,36;ReadPosRankSum=1.053;VarDP=34 GT:AD:DP:GQ:PL:SB 1:16,18,0:34:96:96,0,798:9,7,12,6 +chrX 1377729 . G C, 86.04 . AS_QUALapprox=|96|0;AS_VarDP=16|18|0;BaseQRankSum=2.230;DP=35;MQRankSum=0.000;QUALapprox=96;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;ReadPosRankSum=1.424;VarDP=34 GT:AD:DP:GQ:PL:SB 1:16,18,0:34:96:96,0,798:9,7,12,6 +chrX 1377730 . A . . END=1380564 GT:DP:GQ:MIN_DP:PL 0:56:49:40:0,49 +chrX 1380565 . C T, 58.04 . AS_QUALapprox=|68|0;AS_VarDP=2|6|0;BaseQRankSum=-1.242;DP=12;MQRankSum=1.150;QUALapprox=68;RAW_GT_COUNT=0,0,1;RAW_MQandDP=39940,12;ReadPosRankSum=0.000;VarDP=8 GT:AD:DP:GQ:PL:SB 1:2,6,0:8:68:68,0,138:2,0,6,0 +chrX 1380566 . G . . END=1380612 GT:DP:GQ:MIN_DP:PL 0:12:99:12:0,199 +chrX 1380613 . T TGAG, 109.01 . AS_QUALapprox=|119|0;AS_VarDP=4|7|0;BaseQRankSum=-0.301;DP=15;MQRankSum=0.000;QUALapprox=119;RAW_GT_COUNT=0,0,1;RAW_MQandDP=54000,15;ReadPosRankSum=-1.004;VarDP=11 GT:AD:DP:GQ:PL:SB 1:4,7,0:11:99:119,0,218:4,0,7,0 +chrX 1380614 . G . . END=1380655 GT:DP:GQ:MIN_DP:PL 0:14:99:14:0,352 +chrX 1380656 . AG A, 136.01 . AS_QUALapprox=|146|0;AS_VarDP=6|9|0;BaseQRankSum=-1.068;DP=15;MQRankSum=0.000;QUALapprox=146;RAW_GT_COUNT=0,0,1;RAW_MQandDP=54000,15;ReadPosRankSum=2.374;VarDP=15 GT:AD:DP:GQ:PL:SB 1:6,9,0:15:99:146,0,405:6,0,9,0 +chrX 1380658 . G . . END=1380680 GT:DP:GQ:MIN_DP:PL 0:19:99:19:0,416 +chrX 1380681 . A G, 102.04 . AS_QUALapprox=|112|0;AS_VarDP=10|12|0;BaseQRankSum=1.251;DP=22;MQRankSum=0.000;QUALapprox=112;RAW_GT_COUNT=0,0,1;RAW_MQandDP=79200,22;ReadPosRankSum=0.890;VarDP=22 GT:AD:DP:GQ:PL:SB 1:10,12,0:22:99:112,0,509:10,0,12,0 +chrX 1380682 . G . . END=1380876 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,629 +chrX 1380877 . A G, 303.04 . AS_QUALapprox=|313|0;AS_VarDP=24|34|0;BaseQRankSum=0.056;DP=60;MQRankSum=0.000;QUALapprox=313;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;ReadPosRankSum=-0.750;VarDP=58 GT:AD:DP:GQ:PL:SB 1:24,34,0:58:99:313,0,1118:12,12,17,17 +chrX 1380878 . G . . END=1380941 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1613 +chrX 1380942 . T C, 4.10 . AS_QUALapprox=|14|0;AS_VarDP=32|33|0;BaseQRankSum=-1.382;DP=68;MQRankSum=0.000;QUALapprox=14;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;ReadPosRankSum=0.118;VarDP=65 GT:AD:DP:GQ:PL:SB 1:32,33,0:65:14:14,0,1126:19,13,21,12 +chrX 1380943 . C . . END=1380984 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1800 +chrX 1380985 . T G, 351.04 . AS_QUALapprox=|361|0;AS_VarDP=27|38|0;BaseQRankSum=-0.503;DP=68;MQRankSum=0.000;QUALapprox=361;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;ReadPosRankSum=-1.278;VarDP=65 GT:AD:DP:GQ:PL:SB 1:27,38,0:65:99:361,0,1224:18,9,25,13 +chrX 1380986 . T . . END=1381115 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1691 +chrX 1381116 . T C, 270.04 . AS_QUALapprox=|280|0;AS_VarDP=25|32|0;BaseQRankSum=0.560;DP=59;MQRankSum=1.640;QUALapprox=280;RAW_GT_COUNT=0,0,1;RAW_MQandDP=211250,59;ReadPosRankSum=1.335;VarDP=57 GT:AD:DP:GQ:PL:SB 1:25,32,0:57:99:280,0,1061:10,15,14,18 +chrX 1381117 . T . . END=1381243 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1646 +chrX 1381244 . C T, 276.04 . AS_QUALapprox=|286|0;AS_VarDP=24|34|0;BaseQRankSum=-0.114;DP=58;MQRankSum=0.250;QUALapprox=286;RAW_GT_COUNT=0,0,1;RAW_MQandDP=207434,58;ReadPosRankSum=0.434;VarDP=58 GT:AD:DP:GQ:PL:SB 1:24,34,0:58:99:286,0,1121:12,12,16,18 +chrX 1381245 . A . . END=1381947 GT:DP:GQ:MIN_DP:PL 0:61:58:61:0,58 +chrX 1381948 . G T, 292.04 . AS_QUALapprox=|1578|0;AS_VarDP=3|38|0;DP=60;QUALapprox=1578;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=41 GT:AD:DP:GQ:PL:SB 1:3,38,0:41:99:1578,0,1392:0,0,14,13 +chrX 1381949 . T . . END=1381967 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1800 +chrX 1381968 . C T, 309.04 . AS_QUALapprox=|319|0;AS_VarDP=27|35|0;BaseQRankSum=1.838;DP=65;MQRankSum=0.000;QUALapprox=319;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;ReadPosRankSum=0.362;VarDP=62 GT:AD:DP:GQ:PL:SB 1:27,35,0:62:99:319,0,1187:15,12,21,14 +chrX 1381969 . G . . END=1382273 GT:DP:GQ:MIN_DP:PL 0:77:99:77:0,1142 +chrX 1382274 . G GCC, 594.01 . AS_QUALapprox=|604|0;AS_VarDP=33|48|0;BaseQRankSum=-1.791;DP=84;MQRankSum=-1.947;QUALapprox=604;RAW_GT_COUNT=0,0,1;RAW_MQandDP=289786,84;ReadPosRankSum=-0.661;VarDP=81 GT:AD:DP:GQ:PL:SB 1:33,48,0:81:99:604,0,2058:15,18,20,28 +chrX 1382275 . A ACCGCGCCTGGTCCAAAGTGCCGGGATGACAGGCGTGAGCCACCGCGCCTGGTCCAAAGTGCCGGGATGACAGGCGTGAGC, 592.01 . AS_QUALapprox=|602|0;AS_VarDP=33|48|0;BaseQRankSum=-2.645;DP=85;MQRankSum=-1.947;QUALapprox=602;RAW_GT_COUNT=0,0,1;RAW_MQandDP=293386,85;ReadPosRankSum=-5.242;VarDP=81 GT:AD:DP:GQ:PL:SB 1:33,48,0:81:99:602,0,2058:15,18,20,28 +chrX 1382276 . C . . END=1382669 GT:DP:GQ:MIN_DP:PL 0:58:63:54:0,63 +chrX 1382670 . A AT, 31.01 . AS_QUALapprox=|41|0;AS_VarDP=24|25|0;BaseQRankSum=1.125;DP=57;MQRankSum=0.000;QUALapprox=41;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;ReadPosRankSum=0.971;VarDP=49 GT:AD:DP:GQ:PL:SB 1:24,25,0:49:41:41,0,652:13,11,13,12 +chrX 1382671 . T . . END=1383109 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,179 +chrX 1383110 . C G, 49.04 . AS_QUALapprox=|59|0;AS_VarDP=25|27|0;BaseQRankSum=-0.181;DP=55;MQRankSum=1.078;QUALapprox=59;RAW_GT_COUNT=0,0,1;RAW_MQandDP=197764,55;ReadPosRankSum=0.037;VarDP=52 GT:AD:DP:GQ:PL:SB 1:25,27,0:52:59:59,0,858:10,15,11,16 +chrX 1383111 . A . . END=1383291 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1535 +chrX 1383292 . GGCCTGT G, 60.01 . AS_QUALapprox=|70|0;AS_VarDP=25|27|0;BaseQRankSum=1.893;DP=57;MQRankSum=-0.924;QUALapprox=70;RAW_GT_COUNT=0,0,1;RAW_MQandDP=204625,57;ReadPosRankSum=-0.264;VarDP=52 GT:AD:DP:GQ:PL:SB 1:25,27,0:52:70:70,0,1190:15,10,13,14 +chrX 1383299 . A . . END=1384034 GT:DP:GQ:MIN_DP:PL 0:43:35:42:0,35 +chrX 1384035 . G C, 5.04 . AS_QUALapprox=|15|0;AS_VarDP=26|26|0;BaseQRankSum=0.373;DP=54;MQRankSum=0.000;QUALapprox=15;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;ReadPosRankSum=-1.053;VarDP=52 GT:AD:DP:GQ:PL:SB 1:26,26,0:52:15:15,0,823:9,17,14,12 +chrX 1384036 . T . . END=1384143 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,1415 +chrX 1384144 . A C, 187.04 . AS_QUALapprox=|197|0;AS_VarDP=19|27|0;BaseQRankSum=-1.141;DP=47;MQRankSum=0.000;QUALapprox=197;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;ReadPosRankSum=0.257;VarDP=46 GT:AD:DP:GQ:PL:SB 1:19,27,0:46:99:197,0,828:9,10,16,11 +chrX 1384145 . G . . END=1385744 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,248 +chrX 1385745 . G A, 9.06 . AS_QUALapprox=|19|0;AS_VarDP=26|29|0;BaseQRankSum=-2.082;DP=59;MQRankSum=0.000;QUALapprox=19;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;ReadPosRankSum=-0.278;VarDP=55 GT:AD:DP:GQ:PL:SB 1:26,29,0:55:19:19,0,887:10,16,15,14 +chrX 1385746 . A . . END=1387219 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1603 +chrX 1387220 . T C, 226.04 . AS_QUALapprox=|236|0;AS_VarDP=27|35|0;BaseQRankSum=-0.744;DP=62;MQRankSum=0.000;QUALapprox=236;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;ReadPosRankSum=0.660;VarDP=62 GT:AD:DP:GQ:PL:SB 1:27,35,0:62:99:236,0,1119:11,16,19,16 +chrX 1387221 . A . . END=1387424 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1800 +chrX 1387425 . C G, 465.04 . AS_QUALapprox=|475|0;AS_VarDP=25|40|0;BaseQRankSum=0.801;DP=69;MQRankSum=0.000;QUALapprox=475;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;ReadPosRankSum=-0.209;VarDP=65 GT:AD:DP:GQ:PL:SB 1:25,40,0:65:99:475,0,1272:13,12,22,18 +chrX 1387426 . G . . END=1388152 GT:DP:GQ:MIN_DP:PL 0:71:38:67:0,38 +chrX 1388153 . C T, 67.04 . AS_QUALapprox=|77|0;AS_VarDP=35|37|0;BaseQRankSum=0.836;DP=74;MQRankSum=-0.244;QUALapprox=77;RAW_GT_COUNT=0,0,1;RAW_MQandDP=227978,74;ReadPosRankSum=1.319;VarDP=72 GT:AD:DP:GQ:PL:SB 1:35,37,0:72:77:77,0,1175:15,20,18,19 +chrX 1388154 . T . . END=1388411 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1433 +chrX 1388412 . A . . END=1388412 GT:DP:GQ:MIN_DP:PL 0:68:0:68:0,0 +chrX 1388413 . G . . END=1389173 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1198 +chrX 1389174 . A G, 234.04 . AS_QUALapprox=|244|0;AS_VarDP=28|36|0;BaseQRankSum=-0.200;DP=66;MQRankSum=-0.850;QUALapprox=244;RAW_GT_COUNT=0,0,1;RAW_MQandDP=235681,66;ReadPosRankSum=-1.699;VarDP=64 GT:AD:DP:GQ:PL:SB 1:28,36,0:64:99:244,0,1166:12,16,11,25 +chrX 1389175 . G . . END=1390576 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1364 +chrX 1390577 . CA C, 158.01 . AS_QUALapprox=|168|0;AS_VarDP=17|23|0;BaseQRankSum=-0.197;DP=51;MQRankSum=-0.809;QUALapprox=168;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183025,51;ReadPosRankSum=1.219;VarDP=40 GT:AD:DP:GQ:PL:SB 1:17,23,0:40:99:168,0,590:14,3,12,11 +chrX 1390579 . A . . END=1390817 GT:DP:GQ:MIN_DP:PL 0:78:99:78:0,1114 +chrX 1390818 . C . . END=1390818 GT:DP:GQ:MIN_DP:PL 0:63:4:63:0,4 +chrX 1390819 . T . . END=1391294 GT:DP:GQ:MIN_DP:PL 0:80:35:71:0,35 +chrX 1391295 . C G, 264.04 . AS_QUALapprox=|274|0;AS_VarDP=31|38|0;BaseQRankSum=1.296;DP=69;MQRankSum=0.000;QUALapprox=274;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;ReadPosRankSum=0.772;VarDP=69 GT:AD:DP:GQ:PL:SB 1:31,38,0:69:99:274,0,1246:8,23,16,22 +chrX 1391296 . G . . END=1391743 GT:DP:GQ:MIN_DP:PL 0:75:99:75:0,1800 +chrX 1391744 . C T, 85.04 . AS_QUALapprox=|95|0;AS_VarDP=37|38|0;BaseQRankSum=1.683;DP=75;MQRankSum=0.000;QUALapprox=95;RAW_GT_COUNT=0,0,1;RAW_MQandDP=270000,75;ReadPosRankSum=-2.025;VarDP=75 GT:AD:DP:GQ:PL:SB 1:37,38,0:75:95:95,0,1260:21,16,18,20 +chrX 1391745 . G . . END=1392219 GT:DP:GQ:MIN_DP:PL 0:79:99:79:0,1800 +chrX 1392220 . A G, 29.04 . AS_QUALapprox=|39|0;AS_VarDP=37|39|0;BaseQRankSum=-0.601;DP=84;MQRankSum=0.000;QUALapprox=39;RAW_GT_COUNT=0,0,1;RAW_MQandDP=302400,84;ReadPosRankSum=1.299;VarDP=76 GT:AD:DP:GQ:PL:SB 1:37,39,0:76:39:39,0,1220:17,20,15,24 +chrX 1392221 . C . . END=1392768 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1477 +chrX 1392769 . TG T, 222.01 . AS_QUALapprox=|232|0;AS_VarDP=19|26|0;BaseQRankSum=1.868;DP=50;MQRankSum=0.000;QUALapprox=232;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;ReadPosRankSum=0.000;VarDP=45 GT:AD:DP:GQ:PL:SB 1:19,26,0:45:99:232,0,780:5,14,11,15 +chrX 1392771 . G . . END=1393127 GT:DP:GQ:MIN_DP:PL 0:46:99:46:0,282 +chrX 1393128 . G C, 1077.04 . AS_QUALapprox=|1087|0;AS_VarDP=0|33|0;DP=41;QUALapprox=1087;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147600,41;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1087,0,1087:0,0,16,17 +chrX 1393129 . T . . END=1393207 GT:DP:GQ:MIN_DP:PL 0:38:99:38:0,735 +chrX 1393208 . G C, 863.04 . AS_QUALapprox=|873|0;AS_VarDP=0|28|0;DP=34;QUALapprox=873;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:873,0,873:0,0,18,10 +chrX 1393209 . T . . END=1393232 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,792 +chrX 1393233 . T TCTC, 1363.01 . AS_QUALapprox=|1373|0;AS_VarDP=0|32|0;DP=37;QUALapprox=1373;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133200,37;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1373,0,1373:0,0,22,10 +chrX 1393234 . C . . END=1393318 GT:DP:GQ:MIN_DP:PL 0:35:29:31:0,29 +chrX 1393319 . C . . END=1393320 GT:DP:GQ:MIN_DP:PL 0:38:4:38:0,4 +chrX 1393321 . T . . END=1393329 GT:DP:GQ:MIN_DP:PL 0:39:43:39:0,43 +chrX 1393330 . C . . END=1393331 GT:DP:GQ:MIN_DP:PL 0:38:19:38:0,19 +chrX 1393332 . T . . END=1393644 GT:DP:GQ:MIN_DP:PL 0:56:29:38:0,29 +chrX 1393645 . G C, 3248.04 . AS_QUALapprox=|3258|0;AS_VarDP=0|73|0;DP=73;QUALapprox=3258;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,73,0:73:99:3258,0,3258:0,0,29,44 +chrX 1393646 . G . . END=1393646 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1800 +chrX 1393647 . A G, 3248.04 . AS_QUALapprox=|3258|0;AS_VarDP=0|73|0;DP=74;QUALapprox=3258;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,73,0:73:99:3258,0,3258:0,0,29,44 +chrX 1393648 . C . . END=1393849 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1467 +chrX 1393850 . C CT,CTT, 1107.01 . AS_QUALapprox=|764|1117|0;AS_VarDP=0|9|24|0;DP=56;QUALapprox=1117;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=33 GT:AD:DP:GQ:PL:SB 2:0,9,24,0:33:99:1117,353,0,853:0,0,18,15 +chrX 1393851 . T . . END=1394018 GT:DP:GQ:MIN_DP:PL 0:43:99:43:0,503 +chrX 1394019 . T A, 270.04 . AS_QUALapprox=|280|0;AS_VarDP=17|26|0;BaseQRankSum=-0.230;DP=45;MQRankSum=0.000;QUALapprox=280;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162000,45;ReadPosRankSum=2.025;VarDP=43 GT:AD:DP:GQ:PL:SB 1:17,26,0:43:99:280,0,831:8,9,10,16 +chrX 1394020 . T . . END=1397220 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,773 +chrX 1397221 . A C, 1589.04 . AS_QUALapprox=|1599|0;AS_VarDP=0|52|0;DP=53;QUALapprox=1599;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:1599,0,1599:0,0,21,31 +chrX 1397222 . G . . END=1398807 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,569 +chrX 1398808 . C G, 1970.04 . AS_QUALapprox=|1980|0;AS_VarDP=0|61|0;DP=62;QUALapprox=1980;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,61,0:61:99:1980,0,1980:0,0,33,28 +chrX 1398809 . A . . END=1400362 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,498 +chrX 1400363 . CTGTG C,CTG, 1521.01 . AS_QUALapprox=|1531|1343|0;AS_VarDP=0|32|28|0;DP=70;QUALapprox=1531;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,32,28,0:60:99:1531,0,188,1462:0,0,33,27 +chrX 1400368 . T . . END=1401052 GT:DP:GQ:MIN_DP:PL 0:73:99:73:0,150 +chrX 1401053 . G A, 1753.04 . AS_QUALapprox=|1763|0;AS_VarDP=0|55|0;DP=58;QUALapprox=1763;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201564,58;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:1763,0,1763:0,0,30,25 +chrX 1401054 . C . . END=1402101 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1338 +chrX 1402102 . C T, 2117.04 . AS_QUALapprox=|2127|0;AS_VarDP=0|67|0;DP=69;QUALapprox=2127;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,67,0:67:99:2127,0,2127:0,0,29,38 +chrX 1402103 . C . . END=1402670 GT:DP:GQ:MIN_DP:PL 0:44:70:44:0,70 +chrX 1402671 . C . . END=1402671 GT:DP:GQ:MIN_DP:PL 0:4:0:4:0,0 +chrX 1402672 . A . . END=1402679 GT:DP:GQ:MIN_DP:PL 0:7:55:7:0,55 +chrX 1402680 . T . . END=1402680 GT:DP:GQ:MIN_DP:PL 0:7:0:7:0,0 +chrX 1402681 . T . . END=1402684 GT:DP:GQ:MIN_DP:PL 0:7:59:7:0,59 +chrX 1402685 . T . . END=1402685 GT:DP:GQ:MIN_DP:PL 0:7:14:7:0,14 +chrX 1402686 . C . . END=1402690 GT:DP:GQ:MIN_DP:PL 0:7:55:7:0,55 +chrX 1402691 . T . . END=1402691 GT:DP:GQ:MIN_DP:PL 0:7:0:7:0,0 +chrX 1402692 . C . . END=1402692 GT:DP:GQ:MIN_DP:PL 0:7:99:7:0,114 +chrX 1402693 . C . . END=1402693 GT:DP:GQ:MIN_DP:PL 0:6:0:6:0,0 +chrX 1402694 . C . . END=1402694 GT:DP:GQ:MIN_DP:PL 0:6:99:6:0,129 +chrX 1402695 . A . . END=1402697 GT:DP:GQ:MIN_DP:PL 0:8:0:8:0,0 +chrX 1402698 . A . . END=1402699 GT:DP:GQ:MIN_DP:PL 0:7:20:6:0,20 +chrX 1402700 . G . . END=1402700 GT:DP:GQ:MIN_DP:PL 0:7:0:7:0,0 +chrX 1402701 . C . . END=1402701 GT:DP:GQ:MIN_DP:PL 0:7:99:7:0,184 +chrX 1402702 . A . . END=1402703 GT:DP:GQ:MIN_DP:PL 0:7:0:7:0,0 +chrX 1402704 . C . . END=1402708 GT:DP:GQ:MIN_DP:PL 0:6:20:6:0,20 +chrX 1402709 . G . . END=1402711 GT:DP:GQ:MIN_DP:PL 0:6:0:6:0,0 +chrX 1402712 . C . . END=1402714 GT:DP:GQ:MIN_DP:PL 0:5:55:5:0,55 +chrX 1402715 . A . . END=1402715 GT:DP:GQ:MIN_DP:PL 0:5:0:5:0,0 +chrX 1402716 . C . . END=1402716 GT:DP:GQ:MIN_DP:PL 0:5:99:5:0,164 +chrX 1402717 . T . . END=1402717 GT:DP:GQ:MIN_DP:PL 0:6:0:6:0,0 +chrX 1402718 . C . . END=1404530 GT:DP:GQ:MIN_DP:PL 0:32:25:5:0,25 +chrX 1404531 . A G, 93.04 . AS_QUALapprox=|103|0;AS_VarDP=22|25|0;BaseQRankSum=0.224;DP=48;MQRankSum=0.679;QUALapprox=103;RAW_GT_COUNT=0,0,1;RAW_MQandDP=168546,48;ReadPosRankSum=0.427;VarDP=47 GT:AD:DP:GQ:PL:SB 1:22,25,0:47:99:103,0,800:10,12,13,12 +chrX 1404532 . G . . END=1404689 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1394 +chrX 1404690 . G GTAGA, 1708.01 . AS_QUALapprox=|1718|0;AS_VarDP=3|39|0;BaseQRankSum=1.034;DP=52;MQRankSum=-0.674;QUALapprox=1718;RAW_GT_COUNT=0,0,1;RAW_MQandDP=139148,52;ReadPosRankSum=1.930;VarDP=42 GT:AD:DP:GQ:PL:SB 1:3,39,0:42:99:1718,0,1734:0,3,22,17 +chrX 1404691 . T . . END=1406605 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,853 +chrX 1406606 . A G, 1735.04 . AS_QUALapprox=|1745|0;AS_VarDP=0|54|0;DP=57;QUALapprox=1745;RAW_GT_COUNT=0,0,1;RAW_MQandDP=203281,57;VarDP=54 GT:AD:DP:GQ:PL:SB 1:0,54,0:54:99:1745,0,1745:0,0,25,29 +chrX 1406607 . G . . END=1407041 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1454 +chrX 1407042 . GTAGA G, 2037.01 . AS_QUALapprox=|2047|0;AS_VarDP=0|49|0;DP=53;QUALapprox=2047;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=49 GT:AD:DP:GQ:PL:SB 1:0,49,0:49:99:2047,0,2047:0,0,29,20 +chrX 1407047 . T . . END=1408122 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1453 +chrX 1408123 . C . . END=1408123 GT:DP:GQ:MIN_DP:PL 0:40:0:40:0,0 +chrX 1408124 . G . . END=1408155 GT:DP:GQ:MIN_DP:PL 0:40:99:40:0,978 +chrX 1408156 . G . . END=1408156 GT:DP:GQ:MIN_DP:PL 0:28:0:28:0,0 +chrX 1408157 . C . . END=1408392 GT:DP:GQ:MIN_DP:PL 0:12:45:12:0,45 +chrX 1408393 . C . . END=1408393 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 1408394 . T . . END=1408470 GT:DP:GQ:MIN_DP:PL 0:5:49:5:0,49 +chrX 1408471 . A . . END=1408471 GT:DP:GQ:MIN_DP:PL 0:5:0:5:0,0 +chrX 1408472 . C . . END=1408506 GT:DP:GQ:MIN_DP:PL 0:5:90:5:0,90 +chrX 1408507 . A . . END=1408507 GT:DP:GQ:MIN_DP:PL 0:5:0:5:0,0 +chrX 1408508 . A . . END=1408575 GT:DP:GQ:MIN_DP:PL 0:2:35:1:0,35 +chrX 1408576 . A . . END=1408576 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1408577 . C . . END=1408592 GT:DP:GQ:MIN_DP:PL 0:2:35:1:0,35 +chrX 1408593 . C . . END=1408593 GT:DP:GQ:MIN_DP:PL 0:2:10:2:0,10 +chrX 1408594 . C . . END=1408668 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1408669 . T . . END=1409079 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1409080 . A . . END=1409100 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 1409101 . A . . END=1409101 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1409102 . C . . END=1409136 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1409137 . A . . END=1409137 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1409138 . A . . END=1409139 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1409140 . A . . END=1409141 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1409142 . T . . END=1409143 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1409144 . G . . END=1409144 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1409145 . G . . END=1409148 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 1409149 . G . . END=1409150 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1409151 . T . . END=1409151 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1409152 . G . . END=1409154 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 1409155 . G . . END=1409155 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1409156 . C . . END=1409156 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1409157 . A . . END=1409159 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 1409160 . A . . END=1409160 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 1409161 . G . . END=1409162 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 1409163 . A . . END=1409163 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1409164 . T . . END=1409178 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1409179 . A . . END=1409179 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 1409180 . G . . END=1409181 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 1409182 . T . . END=1409182 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1409183 . C . . END=1409183 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1409184 . A . . END=1409186 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1409187 . G . . END=1409205 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1409206 . A . . END=1409206 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1409207 . C . . END=1409210 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1409211 . A . . END=1409212 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1409213 . T . . END=1409213 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1409214 . G . . END=1409409 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1409410 . A . . END=1409415 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1409416 . G . . END=1409416 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1409417 . C . . END=1409421 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1409422 . C . . END=1409424 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1409425 . C . . END=1409436 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1409437 . A . . END=1409438 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1409439 . G . . END=1409439 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 1409440 . C . . END=1409444 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1409445 . A . . END=1409446 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 1409447 . T . . END=1409447 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1409448 . C . . END=1409449 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 1409450 . C . . END=1409450 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 1409451 . A . . END=1409468 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1409469 . G . . END=1409470 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1409471 . C . . END=1409472 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1409473 . G . . END=1409473 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1409474 . G . . END=1409475 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1409476 . G . . END=1409477 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1409478 . A . . END=1409478 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 1409479 . T . . END=1409479 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1409480 . C . . END=1409480 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1409481 . G . . END=1409484 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1409485 . G . . END=1409528 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1409529 . G . . END=1410222 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1410223 . C . . END=1410508 GT:DP:GQ:MIN_DP:PL 0:30:35:1:0,35 +chrX 1410509 . G A, 2011.04 . AS_QUALapprox=|2021|0;AS_VarDP=0|60|0;DP=62;QUALapprox=2021;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:2021,0,2021:0,0,32,28 +chrX 1410510 . G . . END=1410575 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1800 +chrX 1410576 . A G, 2399.04 . AS_QUALapprox=|2409|0;AS_VarDP=0|74|0;DP=76;QUALapprox=2409;RAW_GT_COUNT=0,0,1;RAW_MQandDP=273025,76;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,74,0:74:99:2409,0,2409:0,0,41,33 +chrX 1410577 . C . . END=1410657 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1800 +chrX 1410658 . C T, 2189.04 . AS_QUALapprox=|2199|0;AS_VarDP=0|65|0;DP=67;QUALapprox=2199;RAW_GT_COUNT=0,0,1;RAW_MQandDP=240625,67;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,65,0:65:99:2199,0,2199:0,0,33,32 +chrX 1410659 . G . . END=1410746 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1800 +chrX 1410747 . GTGATGCA G, 2417.01 . AS_QUALapprox=|2427|0;AS_VarDP=0|55|0;DP=62;QUALapprox=2427;RAW_GT_COUNT=0,0,1;RAW_MQandDP=220000,62;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:2427,0,2427:0,0,27,28 +chrX 1410755 . T . . END=1410835 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1800 +chrX 1410836 . C G, 3257.04 . AS_QUALapprox=|3267|0;AS_VarDP=0|73|0;DP=73;QUALapprox=3267;RAW_GT_COUNT=0,0,1;RAW_MQandDP=258800,73;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,73,0:73:99:3267,0,3267:0,0,40,33 +chrX 1410837 . C T, 3282.04 . AS_QUALapprox=|3292|0;AS_VarDP=0|74|0;DP=74;QUALapprox=3292;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262400,74;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,74,0:74:99:3292,0,3292:0,0,40,34 +chrX 1410838 . T . . END=1410846 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1800 +chrX 1410847 . T G, 3276.04 . AS_QUALapprox=|3286|0;AS_VarDP=0|75|0;DP=76;QUALapprox=3286;RAW_GT_COUNT=0,0,1;RAW_MQandDP=269600,76;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,75,0:75:99:3286,0,3286:0,0,41,34 +chrX 1410848 . C . . END=1410968 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1737 +chrX 1410969 . C T, 1786.04 . AS_QUALapprox=|1796|0;AS_VarDP=0|53|0;DP=54;QUALapprox=1796;RAW_GT_COUNT=0,0,1;RAW_MQandDP=193825,54;VarDP=53 GT:AD:DP:GQ:PL:SB 1:0,53,0:53:99:1796,0,1796:0,0,21,32 +chrX 1410970 . G . . END=1411060 GT:DP:GQ:MIN_DP:PL 0:47:99:47:0,1320 +chrX 1411061 . A C, 1408.04 . AS_QUALapprox=|1418|0;AS_VarDP=0|45|0;DP=45;QUALapprox=1418;RAW_GT_COUNT=0,0,1;RAW_MQandDP=161104,45;VarDP=45 GT:AD:DP:GQ:PL:SB 1:0,45,0:45:99:1418,0,1418:0,0,26,19 +chrX 1411062 . G . . END=1411107 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,1414 +chrX 1411108 . C G, 1582.04 . AS_QUALapprox=|1592|0;AS_VarDP=0|49|0;DP=50;QUALapprox=1592;RAW_GT_COUNT=0,0,1;RAW_MQandDP=174068,50;VarDP=49 GT:AD:DP:GQ:PL:SB 1:0,49,0:49:99:1592,0,1592:0,0,23,26 +chrX 1411109 . T . . END=1411167 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,1544 +chrX 1411168 . A C, 2264.04 . AS_QUALapprox=|2274|0;AS_VarDP=0|51|0;DP=51;QUALapprox=2274;RAW_GT_COUNT=0,0,1;RAW_MQandDP=182704,51;VarDP=51 GT:AD:DP:GQ:PL:SB 1:0,51,0:51:99:2274,0,2274:0,0,27,24 +chrX 1411169 . G . . END=1411170 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,1588 +chrX 1411171 . G A, 2265.04 . AS_QUALapprox=|2275|0;AS_VarDP=0|51|0;DP=51;QUALapprox=2275;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=51 GT:AD:DP:GQ:PL:SB 1:0,51,0:51:99:2275,0,2275:0,0,28,23 +chrX 1411172 . A . . END=1411190 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,1478 +chrX 1411191 . A C, 2099.04 . AS_QUALapprox=|2109|0;AS_VarDP=0|49|0;DP=52;QUALapprox=2109;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=49 GT:AD:DP:GQ:PL:SB 1:0,49,0:49:99:2109,0,2109:0,0,27,22 +chrX 1411192 . A . . END=1411239 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1568 +chrX 1411240 . G GGA, 2261.01 . AS_QUALapprox=|2271|0;AS_VarDP=0|56|0;DP=59;QUALapprox=2271;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,56,0:56:99:2271,0,2271:0,0,34,22 +chrX 1411241 . G . . END=1411334 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1800 +chrX 1411335 . C G, 31.04 . AS_QUALapprox=|41|0;AS_VarDP=40|42|0;BaseQRankSum=-0.590;DP=83;MQRankSum=0.000;QUALapprox=41;RAW_GT_COUNT=0,0,1;RAW_MQandDP=298800,83;ReadPosRankSum=0.826;VarDP=82 GT:AD:DP:GQ:PL:SB 1:40,42,0:82:41:41,0,1330:20,20,27,15 +chrX 1411336 . C . . END=1411623 GT:DP:GQ:MIN_DP:PL 0:81:99:81:0,153 +chrX 1411624 . G GCTGACACTTCAGCAACACGGCTGTAAA, 3767.01 . AS_QUALapprox=|3777|0;AS_VarDP=0|84|0;DP=93;QUALapprox=3777;RAW_GT_COUNT=0,0,1;RAW_MQandDP=334800,93;VarDP=84 GT:AD:DP:GQ:PL:SB 1:0,84,0:84:99:3777,0,3780:0,0,39,45 +chrX 1411625 . C . . END=1411684 GT:DP:GQ:MIN_DP:PL 0:79:99:79:0,1800 +chrX 1411685 . C A, 262.04 . AS_QUALapprox=|272|0;AS_VarDP=38|46|0;BaseQRankSum=0.694;DP=89;MQRankSum=0.000;QUALapprox=272;RAW_GT_COUNT=0,0,1;RAW_MQandDP=320400,89;ReadPosRankSum=-1.321;VarDP=84 GT:AD:DP:GQ:PL:SB 1:38,46,0:84:99:272,0,1482:18,20,15,31 +chrX 1411686 . C . . END=1411805 GT:DP:GQ:MIN_DP:PL 0:68:45:63:0,45 +chrX 1411806 . CT C,CTT, 168.01 . AS_QUALapprox=|0|178|0;AS_VarDP=1|3|14|0;BaseQRankSum=2.030;DP=47;MQRankSum=0.000;QUALapprox=178;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162409,47;ReadPosRankSum=1.429;VarDP=18 GT:AD:DP:GQ:PL:SB 2:1,3,14,0:18:99:178,395,0,333:0,1,11,6 +chrX 1411808 . T . . END=1412106 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,233 +chrX 1412107 . A G, 49.04 . AS_QUALapprox=|59|0;AS_VarDP=32|35|0;BaseQRankSum=-0.545;DP=69;MQRankSum=0.000;QUALapprox=59;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;ReadPosRankSum=1.074;VarDP=67 GT:AD:DP:GQ:PL:SB 1:32,35,0:67:59:59,0,1061:12,20,15,20 +chrX 1412108 . C . . END=1412290 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1698 +chrX 1412291 . G . . END=1412291 GT:DP:GQ:MIN_DP:PL 0:60:0:60:0,0 +chrX 1412292 . A . . END=1412319 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,219 +chrX 1412320 . C . . END=1412320 GT:DP:GQ:MIN_DP:PL 0:63:0:63:0,0 +chrX 1412321 . G . . END=1412371 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1800 +chrX 1412372 . T C, 4.10 . AS_QUALapprox=|14|0;AS_VarDP=31|33|0;BaseQRankSum=-1.799;DP=67;MQRankSum=-0.938;QUALapprox=14;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237866,67;ReadPosRankSum=-0.860;VarDP=64 GT:AD:DP:GQ:PL:SB 1:31,33,0:64:14:14,0,1036:12,19,13,20 +chrX 1412373 . G . . END=1412548 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,452 +chrX 1412549 . G . . END=1412549 GT:DP:GQ:MIN_DP:PL 0:63:0:63:0,0 +chrX 1412550 . A . . END=1412664 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,237 +chrX 1412665 . C T, 464.04 . AS_QUALapprox=|474|0;AS_VarDP=27|40|0;BaseQRankSum=0.714;DP=70;MQRankSum=0.304;QUALapprox=474;RAW_GT_COUNT=0,0,1;RAW_MQandDP=250850,70;ReadPosRankSum=0.320;VarDP=67 GT:AD:DP:GQ:PL:SB 1:27,40,0:67:99:474,0,1310:16,11,19,21 +chrX 1412666 . T . . END=1412754 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1800 +chrX 1412755 . C T, 270.04 . AS_QUALapprox=|280|0;AS_VarDP=31|39|0;BaseQRankSum=0.400;DP=74;MQRankSum=0.000;QUALapprox=280;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;ReadPosRankSum=-1.035;VarDP=70 GT:AD:DP:GQ:PL:SB 1:31,39,0:70:99:280,0,1306:19,12,20,19 +chrX 1412756 . T . . END=1412871 GT:DP:GQ:MIN_DP:PL 0:75:99:75:0,1718 +chrX 1412872 . C G, 367.04 . AS_QUALapprox=|377|0;AS_VarDP=27|33|0;BaseQRankSum=1.126;DP=60;MQRankSum=0.000;QUALapprox=377;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;ReadPosRankSum=-0.399;VarDP=60 GT:AD:DP:GQ:PL:SB 1:27,33,0:60:99:377,0,1464:12,15,18,15 +chrX 1412873 . G . . END=1412876 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1800 +chrX 1412877 . T C, 402.04 . AS_QUALapprox=|412|0;AS_VarDP=26|33|0;BaseQRankSum=-0.132;DP=59;MQRankSum=0.000;QUALapprox=412;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;ReadPosRankSum=-0.983;VarDP=59 GT:AD:DP:GQ:PL:SB 1:26,33,0:59:99:412,0,1464:11,15,18,15 +chrX 1412878 . A . . END=1412944 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1742 +chrX 1412945 . A G, 124.04 . AS_QUALapprox=|134|0;AS_VarDP=26|31|0;BaseQRankSum=-1.429;DP=58;MQRankSum=0.000;QUALapprox=134;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;ReadPosRankSum=1.675;VarDP=57 GT:AD:DP:GQ:PL:SB 1:26,31,0:57:99:134,0,1012:15,11,16,15 +chrX 1412946 . T . . END=1413243 GT:DP:GQ:MIN_DP:PL 0:72:64:72:0,64 +chrX 1413244 . C G, 751.04 . AS_QUALapprox=|761|0;AS_VarDP=28|45|0;BaseQRankSum=0.591;DP=73;MQRankSum=-1.103;QUALapprox=761;RAW_GT_COUNT=0,0,1;RAW_MQandDP=260501,73;ReadPosRankSum=1.231;VarDP=73 GT:AD:DP:GQ:PL:SB 1:28,45,0:73:99:761,0,1978:17,11,19,26 +chrX 1413245 . C . . END=1413252 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1800 +chrX 1413253 . G T, 3229.04 . AS_QUALapprox=|3239|0;AS_VarDP=0|72|0;DP=73;QUALapprox=3239;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259401,73;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,72,0:72:99:3239,0,3239:0,0,35,37 +chrX 1413254 . C . . END=1414719 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,437 +chrX 1414720 . T C, 1889.04 . AS_QUALapprox=|1899|0;AS_VarDP=0|57|0;DP=57;QUALapprox=1899;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:1899,0,1899:0,0,29,28 +chrX 1414721 . T . . END=1414802 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1626 +chrX 1414803 . G A, 2194.04 . AS_QUALapprox=|2204|0;AS_VarDP=0|50|0;DP=53;QUALapprox=2204;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,50,0:50:99:2204,0,2204:0,0,18,32 +chrX 1414804 . C T, 2239.04 . AS_QUALapprox=|2249|0;AS_VarDP=0|51|0;DP=53;QUALapprox=2249;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=51 GT:AD:DP:GQ:PL:SB 1:0,51,0:51:99:2249,0,2249:0,0,19,32 +chrX 1414805 . G . . END=1414823 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1613 +chrX 1414824 . G C,T, 2646.04 . AS_QUALapprox=|824|2656|0;AS_VarDP=0|3|56|0;DP=61;QUALapprox=2656;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=59 GT:AD:DP:GQ:PL:SB 2:0,3,56,0:59:99:2656,1832,0,2289:0,0,26,33 +chrX 1414825 . A . . END=1414845 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1800 +chrX 1414846 . T C, 2825.04 . AS_QUALapprox=|2835|0;AS_VarDP=0|63|0;DP=64;QUALapprox=2835;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,63,0:63:99:2835,0,2835:0,0,29,34 +chrX 1414847 . G . . END=1414855 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1800 +chrX 1414856 . T G, 2825.04 . AS_QUALapprox=|2835|0;AS_VarDP=0|63|0;DP=64;QUALapprox=2835;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,63,0:63:99:2835,0,2835:0,0,31,32 +chrX 1414857 . T . . END=1414877 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1800 +chrX 1414878 . T C, 2674.04 . AS_QUALapprox=|2684|0;AS_VarDP=0|61|0;DP=64;QUALapprox=2684;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,61,0:61:99:2684,0,2684:0,0,28,33 +chrX 1414879 . G . . END=1414941 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1733 +chrX 1414942 . ATT A, 2046.01 . AS_QUALapprox=|2056|0;AS_VarDP=0|50|0;DP=56;QUALapprox=2056;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,50,0:50:99:2056,0,2056:0,0,30,20 +chrX 1414945 . T . . END=1415063 GT:DP:GQ:MIN_DP:PL 0:52:58:50:0,58 +chrX 1415064 . CT C, 2205.01 . AS_QUALapprox=|2215|0;AS_VarDP=0|50|0;DP=52;QUALapprox=2215;RAW_GT_COUNT=0,0,1;RAW_MQandDP=184833,52;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,50,0:50:99:2215,0,2215:0,0,27,23 +chrX 1415066 . G . . END=1415070 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,1482 +chrX 1415071 . G A, 2195.04 . AS_QUALapprox=|2205|0;AS_VarDP=0|50|0;DP=52;QUALapprox=2205;RAW_GT_COUNT=0,0,1;RAW_MQandDP=181586,52;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,50,0:50:99:2205,0,2205:0,0,24,26 +chrX 1415072 . G . . END=1415100 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,1539 +chrX 1415101 . T C, 1747.04 . AS_QUALapprox=|1757|0;AS_VarDP=0|54|0;DP=56;QUALapprox=1757;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198561,56;VarDP=54 GT:AD:DP:GQ:PL:SB 1:0,54,0:54:99:1757,0,1757:0,0,27,27 +chrX 1415102 . G . . END=1415149 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1652 +chrX 1415150 . T C, 1853.04 . AS_QUALapprox=|1863|0;AS_VarDP=0|60|0;DP=62;QUALapprox=1863;RAW_GT_COUNT=0,0,1;RAW_MQandDP=213633,62;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:1863,0,1863:0,0,33,27 +chrX 1415151 . G . . END=1415203 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1800 +chrX 1415204 . G C, 2804.04 . AS_QUALapprox=|2814|0;AS_VarDP=0|64|0;DP=64;QUALapprox=2814;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219857,64;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,64,0:64:99:2814,0,2814:0,0,36,28 +chrX 1415205 . G . . END=1415213 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1800 +chrX 1415214 . T TCCAGGCGTGAGCCTGGGCACGTGGC, 3072.01 . AS_QUALapprox=|3082|0;AS_VarDP=0|70|0;DP=72;QUALapprox=3082;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248657,72;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,70,0:70:99:3082,0,3083:0,0,40,30 +chrX 1415215 . C . . END=1415291 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,1553 +chrX 1415292 . A G, 2409.04 . AS_QUALapprox=|2419|0;AS_VarDP=0|54|0;DP=56;QUALapprox=2419;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201136,56;VarDP=54 GT:AD:DP:GQ:PL:SB 1:0,54,0:54:99:2419,0,2419:0,0,29,25 +chrX 1415293 . C . . END=1415293 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1782 +chrX 1415294 . A C, 2409.04 . AS_QUALapprox=|2419|0;AS_VarDP=0|54|0;DP=56;QUALapprox=2419;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201136,56;VarDP=54 GT:AD:DP:GQ:PL:SB 1:0,54,0:54:99:2419,0,2419:0,0,29,25 +chrX 1415295 . C . . END=1415322 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,1440 +chrX 1415323 . C T, 1571.04 . AS_QUALapprox=|1581|0;AS_VarDP=0|47|0;DP=50;QUALapprox=1581;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=47 GT:AD:DP:GQ:PL:SB 1:0,47,0:47:99:1581,0,1581:0,0,24,23 +chrX 1415324 . G . . END=1415388 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1411 +chrX 1415389 . A C, 2478.04 . AS_QUALapprox=|2488|0;AS_VarDP=0|57|0;DP=61;QUALapprox=2488;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:2488,0,2488:0,0,26,31 +chrX 1415390 . C . . END=1415400 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1547 +chrX 1415401 . C T, 2362.04 . AS_QUALapprox=|2372|0;AS_VarDP=0|56|0;DP=60;QUALapprox=2372;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,56,0:56:99:2372,0,2372:0,0,25,31 +chrX 1415402 . T . . END=1415426 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1637 +chrX 1415427 . T C, 2183.04 . AS_QUALapprox=|2193|0;AS_VarDP=0|49|0;DP=51;QUALapprox=2193;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=49 GT:AD:DP:GQ:PL:SB 1:0,49,0:49:99:2193,0,2193:0,0,20,29 +chrX 1415428 . C . . END=1415428 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,1643 +chrX 1415429 . G A, 2183.04 . AS_QUALapprox=|2193|0;AS_VarDP=0|49|0;DP=51;QUALapprox=2193;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=49 GT:AD:DP:GQ:PL:SB 1:0,49,0:49:99:2193,0,2193:0,0,20,29 +chrX 1415430 . T . . END=1415460 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,1400 +chrX 1415461 . T C, 2095.04 . AS_QUALapprox=|2105|0;AS_VarDP=0|51|0;DP=53;QUALapprox=2105;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187904,53;VarDP=51 GT:AD:DP:GQ:PL:SB 1:0,51,0:51:99:2105,0,2106:0,0,26,25 +chrX 1415462 . T . . END=1415470 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,1537 +chrX 1415471 . C CTTT, 2174.01 . AS_QUALapprox=|2184|0;AS_VarDP=0|52|0;DP=53;QUALapprox=2184;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187904,53;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:2184,0,2184:0,0,25,27 +chrX 1415472 . T . . END=1415491 GT:DP:GQ:MIN_DP:PL 0:46:99:46:0,1325 +chrX 1415492 . T C, 2037.04 . AS_QUALapprox=|2047|0;AS_VarDP=0|51|0;DP=54;QUALapprox=2047;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=51 GT:AD:DP:GQ:PL:SB 1:0,51,0:51:99:2047,0,2047:0,0,28,23 +chrX 1415493 . T . . END=1415610 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1731 +chrX 1415611 . G A, 2848.04 . AS_QUALapprox=|2858|0;AS_VarDP=0|66|0;DP=66;QUALapprox=2858;RAW_GT_COUNT=0,0,1;RAW_MQandDP=232832,66;VarDP=66 GT:AD:DP:GQ:PL:SB 1:0,66,0:66:99:2858,0,2858:0,0,35,31 +chrX 1415612 . C . . END=1415625 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1800 +chrX 1415626 . C T, 3018.04 . AS_QUALapprox=|3028|0;AS_VarDP=0|71|0;DP=73;QUALapprox=3028;RAW_GT_COUNT=0,0,1;RAW_MQandDP=258032,73;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,71,0:71:99:3028,0,3028:0,0,39,32 +chrX 1415627 . G . . END=1415697 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1800 +chrX 1415698 . A T, 2928.04 . AS_QUALapprox=|2938|0;AS_VarDP=0|67|0;DP=68;QUALapprox=2938;RAW_GT_COUNT=0,0,1;RAW_MQandDP=242594,68;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,67,0:67:99:2938,0,2938:0,0,44,23 +chrX 1415699 . C . . END=1415708 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1800 +chrX 1415709 . G A, 3022.04 . AS_QUALapprox=|3032|0;AS_VarDP=0|70|0;DP=71;QUALapprox=3032;RAW_GT_COUNT=0,0,1;RAW_MQandDP=253394,71;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,70,0:70:99:3032,0,3032:0,0,44,26 +chrX 1415710 . C . . END=1415999 GT:DP:GQ:MIN_DP:PL 0:82:99:82:0,1800 +chrX 1416000 . G C, 2003.04 . AS_QUALapprox=|2013|0;AS_VarDP=0|61|0;DP=62;QUALapprox=2013;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,61,0:61:99:2013,0,2013:0,0,28,33 +chrX 1416001 . C . . END=1416044 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1800 +chrX 1416045 . GCA G, 2769.01 . AS_QUALapprox=|2779|0;AS_VarDP=0|66|0;DP=75;QUALapprox=2779;RAW_GT_COUNT=0,0,1;RAW_MQandDP=270000,75;VarDP=66 GT:AD:DP:GQ:PL:SB 1:0,66,0:66:99:2779,0,2779:0,0,25,41 +chrX 1416048 . C . . END=1416331 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1236 +chrX 1416332 . C T, 2000.04 . AS_QUALapprox=|2010|0;AS_VarDP=0|46|0;DP=47;QUALapprox=2010;RAW_GT_COUNT=0,0,1;RAW_MQandDP=168625,47;VarDP=46 GT:AD:DP:GQ:PL:SB 1:0,46,0:46:99:2010,0,2010:0,0,26,20 +chrX 1416333 . G . . END=1416339 GT:DP:GQ:MIN_DP:PL 0:45:99:45:0,1245 +chrX 1416340 . CAG C, 1941.01 . AS_QUALapprox=|1951|0;AS_VarDP=0|44|0;DP=45;QUALapprox=1951;RAW_GT_COUNT=0,0,1;RAW_MQandDP=161425,45;VarDP=44 GT:AD:DP:GQ:PL:SB 1:0,44,0:44:99:1951,0,1951:0,0,24,20 +chrX 1416343 . A . . END=1416384 GT:DP:GQ:MIN_DP:PL 0:43:99:43:0,1012 +chrX 1416385 . GCACA G, 1925.01 . AS_QUALapprox=|1935|0;AS_VarDP=0|43|0;DP=47;QUALapprox=1935;RAW_GT_COUNT=0,0,1;RAW_MQandDP=168050,47;VarDP=43 GT:AD:DP:GQ:PL:SB 1:0,43,0:43:99:1935,0,1935:0,0,19,24 +chrX 1416390 . C . . END=1416415 GT:DP:GQ:MIN_DP:PL 0:45:99:45:0,1205 +chrX 1416416 . AACAG A, 2015.01 . AS_QUALapprox=|2025|0;AS_VarDP=0|45|0;DP=47;QUALapprox=2025;RAW_GT_COUNT=0,0,1;RAW_MQandDP=168050,47;VarDP=45 GT:AD:DP:GQ:PL:SB 1:0,45,0:45:99:2025,0,2025:0,0,19,26 +chrX 1416421 . A . . END=1416457 GT:DP:GQ:MIN_DP:PL 0:41:99:41:0,1175 +chrX 1416458 . G GAC, 535.01 . AS_QUALapprox=|545|0;AS_VarDP=13|26|0;BaseQRankSum=-1.064;DP=47;MQRankSum=1.469;QUALapprox=545;RAW_GT_COUNT=0,0,1;RAW_MQandDP=168736,47;ReadPosRankSum=-0.016;VarDP=39 GT:AD:DP:GQ:PL:SB 1:13,26,0:39:99:545,0,1091:6,7,14,12 +chrX 1416459 . A . . END=1416462 GT:DP:GQ:MIN_DP:PL 0:44:99:44:0,1349 +chrX 1416463 . G A, 1950.04 . AS_QUALapprox=|1960|0;AS_VarDP=0|44|0;DP=46;QUALapprox=1960;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165136,46;VarDP=44 GT:AD:DP:GQ:PL:SB 1:0,44,0:44:99:1960,0,1960:0,0,22,22 +chrX 1416464 . C . . END=1416539 GT:DP:GQ:MIN_DP:PL 0:45:99:45:0,342 +chrX 1416540 . C T, 1622.04 . AS_QUALapprox=|1632|0;AS_VarDP=1|53|0;BaseQRankSum=2.097;DP=54;MQRankSum=0.000;QUALapprox=1632;RAW_GT_COUNT=0,0,1;RAW_MQandDP=193936,54;ReadPosRankSum=0.931;VarDP=54 GT:AD:DP:GQ:PL:SB 1:1,53,0:54:99:1632,0,1642:0,1,26,27 +chrX 1416541 . G . . END=1416708 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1599 +chrX 1416709 . C T, 1722.04 . AS_QUALapprox=|1732|0;AS_VarDP=1|53|0;BaseQRankSum=2.806;DP=57;MQRankSum=0.000;QUALapprox=1732;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;ReadPosRankSum=1.091;VarDP=54 GT:AD:DP:GQ:PL:SB 1:1,53,0:54:99:1732,0,1741:1,0,28,25 +chrX 1416710 . G . . END=1416736 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1580 +chrX 1416737 . ACAGT A, 2106.01 . AS_QUALapprox=|2116|0;AS_VarDP=0|47|0;DP=57;QUALapprox=2116;RAW_GT_COUNT=0,0,1;RAW_MQandDP=204201,57;VarDP=47 GT:AD:DP:GQ:PL:SB 1:0,47,0:47:99:2116,0,2116:0,0,23,24 +chrX 1416742 . C . . END=1416777 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1433 +chrX 1416778 . TACAC T, 2272.01 . AS_QUALapprox=|2282|0;AS_VarDP=0|51|0;DP=55;QUALapprox=2282;RAW_GT_COUNT=0,0,1;RAW_MQandDP=197001,55;VarDP=51 GT:AD:DP:GQ:PL:SB 1:0,51,0:51:99:2282,0,2282:0,0,22,29 +chrX 1416783 . A . . END=1416823 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1502 +chrX 1416824 . T C, 1995.04 . AS_QUALapprox=|2005|0;AS_VarDP=0|60|0;DP=65;QUALapprox=2005;RAW_GT_COUNT=0,0,1;RAW_MQandDP=233764,65;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:2005,0,2005:0,0,22,38 +chrX 1416825 . A . . END=1416853 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1683 +chrX 1416854 . G C, 1834.04 . AS_QUALapprox=|1844|0;AS_VarDP=0|56|0;DP=58;QUALapprox=1844;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208564,58;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,56,0:56:99:1844,0,1844:0,0,24,32 +chrX 1416855 . A . . END=1417033 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1621 +chrX 1417034 . G GAC, 2658.01 . AS_QUALapprox=|2668|0;AS_VarDP=0|60|0;DP=64;QUALapprox=2668;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:2668,0,2668:0,0,35,25 +chrX 1417035 . A . . END=1417050 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1725 +chrX 1417051 . T C, 2448.04 . AS_QUALapprox=|2458|0;AS_VarDP=0|56|0;DP=58;QUALapprox=2458;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,56,0:56:99:2458,0,2459:0,0,32,24 +chrX 1417052 . G . . END=1417142 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1800 +chrX 1417143 . A G, 1754.04 . AS_QUALapprox=|1764|0;AS_VarDP=0|60|0;DP=65;QUALapprox=1764;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:1764,0,1764:0,0,32,28 +chrX 1417144 . G . . END=1417303 GT:DP:GQ:MIN_DP:PL 0:80:99:80:0,1774 +chrX 1417304 . C CAG, 3072.01 . AS_QUALapprox=|3082|0;AS_VarDP=0|70|0;DP=76;QUALapprox=3082;RAW_GT_COUNT=0,0,1;RAW_MQandDP=273600,76;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,70,0:70:99:3082,0,3082:0,0,26,44 +chrX 1417305 . A . . END=1417341 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1800 +chrX 1417342 . C T, 2720.04 . AS_QUALapprox=|2730|0;AS_VarDP=0|62|0;DP=63;QUALapprox=2730;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:2730,0,2730:0,0,24,38 +chrX 1417343 . G A, 2720.04 . AS_QUALapprox=|2730|0;AS_VarDP=0|62|0;DP=63;QUALapprox=2730;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:2730,0,2730:0,0,24,38 +chrX 1417344 . G . . END=1417357 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1800 +chrX 1417358 . A C, 2528.04 . AS_QUALapprox=|2538|0;AS_VarDP=0|58|0;DP=59;QUALapprox=2538;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,58,0:58:99:2538,0,2538:0,0,23,35 +chrX 1417359 . C . . END=1417404 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1715 +chrX 1417405 . C T, 2628.04 . AS_QUALapprox=|2638|0;AS_VarDP=0|60|0;DP=61;QUALapprox=2638;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:2638,0,2638:0,0,24,36 +chrX 1417406 . G . . END=1417410 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1800 +chrX 1417411 . C CACAG, 1753.01 . AS_QUALapprox=|1763|0;AS_VarDP=0|51|0;DP=58;QUALapprox=1763;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=51 GT:AD:DP:GQ:PL:SB 1:0,51,0:51:99:1763,0,1763:0,0,20,31 +chrX 1417412 . A . . END=1417515 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1669 +chrX 1417516 . C CAT, 2443.01 . AS_QUALapprox=|2453|0;AS_VarDP=0|55|0;DP=58;QUALapprox=2453;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205600,58;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:2453,0,2454:0,0,25,30 +chrX 1417517 . A . . END=1417522 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1542 +chrX 1417523 . G GCA, 2394.01 . AS_QUALapprox=|2404|0;AS_VarDP=0|54|0;DP=55;QUALapprox=2404;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194800,55;VarDP=54 GT:AD:DP:GQ:PL:SB 1:0,54,0:54:99:2404,0,2404:0,0,26,28 +chrX 1417524 . C . . END=1417569 GT:DP:GQ:MIN_DP:PL 0:47:99:47:0,1364 +chrX 1417570 . GCACA G, 2095.01 . AS_QUALapprox=|2105|0;AS_VarDP=0|47|0;DP=48;QUALapprox=2105;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=47 GT:AD:DP:GQ:PL:SB 1:0,47,0:47:99:2105,0,2105:0,0,23,24 +chrX 1417575 . C . . END=1417720 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1195 +chrX 1417721 . GAC G, 2857.48 . AS_QUALapprox=|2871|0;AS_VarDP=0|66|0;DP=75;QUALapprox=2871;RAW_GT_COUNT=0,0,1;RAW_MQandDP=270000,75;VarDP=66 GT:AD:DP:GQ:PL:SB 1:0,66,0:66:99:2871,0,2862:0,0,27,29 +chrX 1417724 . A . . END=1417747 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1368 +chrX 1417748 . G A, 2487.04 . AS_QUALapprox=|2933|0;AS_VarDP=0|67|0;DP=68;QUALapprox=2933;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,67,0:67:99:2933,0,2711:0,0,28,29 +chrX 1417749 . C . . END=1417751 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1305 +chrX 1417752 . AGACATGCTCCATGT A, 2271.04 . AS_QUALapprox=|2727|0;AS_VarDP=0|62|0;DP=63;QUALapprox=2727;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:2727,0,2495:0,0,26,26 +chrX 1417767 . C . . END=1417768 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1339 +chrX 1417769 . CAGGTAT C, 2271.04 . AS_QUALapprox=|2727|0;AS_VarDP=0|62|0;DP=63;QUALapprox=2727;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:2727,0,2495:0,0,26,26 +chrX 1417776 . G . . END=1417803 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1530 +chrX 1417804 . CAGAG C, 2625.01 . AS_QUALapprox=|2635|0;AS_VarDP=0|59|0;DP=65;QUALapprox=2635;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230929,65;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:2635,0,2635:0,0,24,35 +chrX 1417809 . A . . END=1418108 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1587 +chrX 1418109 . C G, 1830.04 . AS_QUALapprox=|1840|0;AS_VarDP=0|57|0;DP=58;QUALapprox=1840;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:1840,0,1840:0,0,27,30 +chrX 1418110 . G . . END=1418521 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1125 +chrX 1418522 . G T, 1604.04 . AS_QUALapprox=|1614|0;AS_VarDP=0|47|0;DP=47;QUALapprox=1614;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;VarDP=47 GT:AD:DP:GQ:PL:SB 1:0,47,0:47:99:1614,0,1614:0,0,25,22 +chrX 1418523 . G . . END=1418740 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,1453 +chrX 1418741 . T C, 1858.04 . AS_QUALapprox=|1868|0;AS_VarDP=0|58|0;DP=58;QUALapprox=1868;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,58,0:58:99:1868,0,1868:0,0,31,27 +chrX 1418742 . G . . END=1419420 GT:DP:GQ:MIN_DP:PL 0:71:39:68:0,39 +chrX 1419421 . C T, 2006.04 . AS_QUALapprox=|2016|0;AS_VarDP=0|64|0;DP=67;QUALapprox=2016;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,64,0:64:99:2016,0,2016:0,0,32,32 +chrX 1419422 . C . . END=1420046 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1072 +chrX 1420047 . G C, 2273.04 . AS_QUALapprox=|2283|0;AS_VarDP=0|51|0;DP=52;QUALapprox=2283;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=51 GT:AD:DP:GQ:PL:SB 1:0,51,0:51:99:2283,0,2283:0,0,27,24 +chrX 1420048 . T . . END=1420048 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,1668 +chrX 1420049 . C CTA, 2308.01 . AS_QUALapprox=|2318|0;AS_VarDP=0|52|0;DP=55;QUALapprox=2318;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:2318,0,2318:0,0,28,24 +chrX 1420050 . T . . END=1420164 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1533 +chrX 1420165 . A G, 1486.04 . AS_QUALapprox=|1496|0;AS_VarDP=0|51|0;DP=54;QUALapprox=1496;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=51 GT:AD:DP:GQ:PL:SB 1:0,51,0:51:99:1496,0,1496:0,0,32,19 +chrX 1420166 . T . . END=1420836 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,159 +chrX 1420837 . G A, 1945.04 . AS_QUALapprox=|1955|0;AS_VarDP=0|61|0;DP=66;QUALapprox=1955;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237025,66;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,61,0:61:99:1955,0,1955:0,0,37,24 +chrX 1420838 . G . . END=1420938 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1410 +chrX 1420939 . A G, 1489.04 . AS_QUALapprox=|1499|0;AS_VarDP=0|44|0;DP=45;QUALapprox=1499;RAW_GT_COUNT=0,0,1;RAW_MQandDP=161425,45;VarDP=44 GT:AD:DP:GQ:PL:SB 1:0,44,0:44:99:1499,0,1499:0,0,23,21 +chrX 1420940 . T . . END=1420959 GT:DP:GQ:MIN_DP:PL 0:40:99:40:0,1181 +chrX 1420960 . ATT A, 919.01 . AS_QUALapprox=|929|0;AS_VarDP=1|28|0;BaseQRankSum=-0.136;DP=44;MQRankSum=3.944;QUALapprox=929;RAW_GT_COUNT=0,0,1;RAW_MQandDP=155825,44;ReadPosRankSum=1.495;VarDP=29 GT:AD:DP:GQ:PL:SB 1:1,28,0:29:99:929,0,954:1,0,15,13 +chrX 1420963 . T . . END=1421165 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1019 +chrX 1421166 . C T, 2392.04 . AS_QUALapprox=|2402|0;AS_VarDP=0|73|0;DP=73;QUALapprox=2402;RAW_GT_COUNT=0,0,1;RAW_MQandDP=261329,73;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,73,0:73:99:2402,0,2402:0,0,33,40 +chrX 1421167 . G . . END=1421226 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1800 +chrX 1421227 . A G, 2368.04 . AS_QUALapprox=|2378|0;AS_VarDP=0|64|0;DP=66;QUALapprox=2378;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234337,66;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,64,0:64:99:2378,0,2378:0,0,35,29 +chrX 1421228 . C . . END=1422182 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,551 +chrX 1422183 . A G, 1970.04 . AS_QUALapprox=|1980|0;AS_VarDP=0|61|0;DP=63;QUALapprox=1980;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,61,0:61:99:1980,0,1980:0,0,30,31 +chrX 1422184 . T . . END=1422205 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1800 +chrX 1422206 . T C, 2645.04 . AS_QUALapprox=|2655|0;AS_VarDP=0|59|0;DP=61;QUALapprox=2655;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:2655,0,2655:0,0,30,29 +chrX 1422207 . G A, 2645.04 . AS_QUALapprox=|2655|0;AS_VarDP=0|59|0;DP=60;QUALapprox=2655;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:2655,0,2655:0,0,30,29 +chrX 1422208 . C . . END=1422233 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1728 +chrX 1422234 . C T, 2568.04 . AS_QUALapprox=|2578|0;AS_VarDP=0|58|0;DP=58;QUALapprox=2578;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,58,0:58:99:2578,0,2578:0,0,33,25 +chrX 1422235 . A G, 2568.04 . AS_QUALapprox=|2578|0;AS_VarDP=0|58|0;DP=60;QUALapprox=2578;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,58,0:58:99:2578,0,2578:0,0,33,25 +chrX 1422236 . G . . END=1422271 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1800 +chrX 1422272 . A G, 3118.04 . AS_QUALapprox=|3128|0;AS_VarDP=0|70|0;DP=70;QUALapprox=3128;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,70,0:70:99:3128,0,3128:0,0,41,29 +chrX 1422273 . T C, 3118.04 . AS_QUALapprox=|3128|0;AS_VarDP=0|70|0;DP=70;QUALapprox=3128;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,70,0:70:99:3128,0,3128:0,0,41,29 +chrX 1422274 . T . . END=1422381 GT:DP:GQ:MIN_DP:PL 0:80:99:80:0,1800 +chrX 1422382 . C G, 2550.04 . AS_QUALapprox=|2560|0;AS_VarDP=0|81|0;DP=83;QUALapprox=2560;RAW_GT_COUNT=0,0,1;RAW_MQandDP=298800,83;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,81,0:81:99:2560,0,2560:0,0,41,40 +chrX 1422383 . C . . END=1422416 GT:DP:GQ:MIN_DP:PL 0:74:99:74:0,1800 +chrX 1422417 . T C, 3052.04 . AS_QUALapprox=|3062|0;AS_VarDP=0|69|0;DP=70;QUALapprox=3062;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,69,0:69:99:3062,0,3062:0,0,35,34 +chrX 1422418 . A . . END=1422419 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1800 +chrX 1422420 . A G, 3052.04 . AS_QUALapprox=|3062|0;AS_VarDP=0|69|0;DP=70;QUALapprox=3062;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,69,0:69:99:3062,0,3062:0,0,35,34 +chrX 1422421 . C . . END=1422434 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1800 +chrX 1422435 . C T, 3289.04 . AS_QUALapprox=|3299|0;AS_VarDP=0|74|0;DP=74;QUALapprox=3299;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,74,0:74:99:3299,0,3299:0,0,36,38 +chrX 1422436 . T . . END=1422436 GT:DP:GQ:MIN_DP:PL 0:73:99:73:0,1800 +chrX 1422437 . C T, 3324.04 . AS_QUALapprox=|3334|0;AS_VarDP=0|75|0;DP=75;QUALapprox=3334;RAW_GT_COUNT=0,0,1;RAW_MQandDP=270000,75;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,75,0:75:99:3334,0,3334:0,0,37,38 +chrX 1422438 . A . . END=1422446 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1800 +chrX 1422447 . C A, 3044.04 . AS_QUALapprox=|3054|0;AS_VarDP=0|69|0;DP=70;QUALapprox=3054;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,69,0:69:99:3054,0,3054:0,0,33,36 +chrX 1422448 . T . . END=1422511 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1800 +chrX 1422512 . T C, 2450.04 . AS_QUALapprox=|2460|0;AS_VarDP=0|75|0;DP=78;QUALapprox=2460;RAW_GT_COUNT=0,0,1;RAW_MQandDP=280800,78;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,75,0:75:99:2460,0,2460:0,0,39,36 +chrX 1422513 . C . . END=1422549 GT:DP:GQ:MIN_DP:PL 0:76:99:76:0,1800 +chrX 1422550 . C T, 2325.04 . AS_QUALapprox=|2335|0;AS_VarDP=0|75|0;DP=80;QUALapprox=2335;RAW_GT_COUNT=0,0,1;RAW_MQandDP=288000,80;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,75,0:75:99:2335,0,2335:0,0,40,35 +chrX 1422551 . C . . END=1422630 GT:DP:GQ:MIN_DP:PL 0:80:99:80:0,1800 +chrX 1422631 . C T, 2506.04 . AS_QUALapprox=|2516|0;AS_VarDP=0|77|0;DP=79;QUALapprox=2516;RAW_GT_COUNT=0,0,1;RAW_MQandDP=284400,79;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,77,0:77:99:2516,0,2516:0,0,26,51 +chrX 1422632 . G . . END=1422662 GT:DP:GQ:MIN_DP:PL 0:73:99:73:0,1800 +chrX 1422663 . C T, 2295.04 . AS_QUALapprox=|2305|0;AS_VarDP=0|72|0;DP=72;QUALapprox=2305;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,72,0:72:99:2305,0,2305:0,0,24,48 +chrX 1422664 . G . . END=1423208 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1652 +chrX 1423209 . C T, 2042.04 . AS_QUALapprox=|2052|0;AS_VarDP=0|61|0;DP=62;QUALapprox=2052;RAW_GT_COUNT=0,0,1;RAW_MQandDP=221834,62;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,61,0:61:99:2052,0,2052:0,0,27,34 +chrX 1423210 . C . . END=1423258 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1593 +chrX 1423259 . C T, 1767.04 . AS_QUALapprox=|1777|0;AS_VarDP=0|54|0;DP=56;QUALapprox=1777;RAW_GT_COUNT=0,0,1;RAW_MQandDP=200809,56;VarDP=54 GT:AD:DP:GQ:PL:SB 1:0,54,0:54:99:1777,0,1777:0,0,23,31 +chrX 1423260 . G . . END=1423483 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1603 +chrX 1423484 . A G, 1702.04 . AS_QUALapprox=|1712|0;AS_VarDP=0|52|0;DP=53;QUALapprox=1712;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:1712,0,1712:0,0,24,28 +chrX 1423485 . T . . END=1423554 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,1435 +chrX 1423555 . C T, 1647.04 . AS_QUALapprox=|1657|0;AS_VarDP=1|51|0;BaseQRankSum=2.438;DP=54;MQRankSum=0.000;QUALapprox=1657;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;ReadPosRankSum=1.366;VarDP=52 GT:AD:DP:GQ:PL:SB 1:1,51,0:52:99:1657,0,1667:1,0,28,23 +chrX 1423556 . T . . END=1423594 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,1388 +chrX 1423595 . G A, 1653.04 . AS_QUALapprox=|1663|0;AS_VarDP=0|56|0;DP=57;QUALapprox=1663;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,56,0:56:99:1663,0,1663:0,0,28,28 +chrX 1423596 . T . . END=1423742 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1387 +chrX 1423743 . TCCATCCATCCTC T, 1492.01 . AS_QUALapprox=|1502|0;AS_VarDP=0|34|0;DP=46;QUALapprox=1502;RAW_GT_COUNT=0,0,1;RAW_MQandDP=159997,46;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1502,0,1502:0,0,19,15 +chrX 1423756 . C . . END=1423774 GT:DP:GQ:MIN_DP:PL 0:37:99:37:0,1001 +chrX 1423775 . CCCAT C, 1475.01 . AS_QUALapprox=|1485|0;AS_VarDP=1|35|0;BaseQRankSum=1.793;DP=46;MQRankSum=6.085;QUALapprox=1485;RAW_GT_COUNT=0,0,1;RAW_MQandDP=153798,46;ReadPosRankSum=-1.637;VarDP=36 GT:AD:DP:GQ:PL:SB 1:1,35,0:36:99:1485,0,1520:0,1,16,19 +chrX 1423780 . C . . END=1424324 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,550 +chrX 1424325 . C T, 1154.04 . AS_QUALapprox=|1164|0;AS_VarDP=0|36|0;DP=39;QUALapprox=1164;RAW_GT_COUNT=0,0,1;RAW_MQandDP=135850,39;VarDP=36 GT:AD:DP:GQ:PL:SB 1:0,36,0:36:99:1164,0,1164:0,0,16,20 +chrX 1424326 . A . . END=1424364 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,778 +chrX 1424365 . C CATCCACCCTCCCATCCATCT, 1236.01 . AS_QUALapprox=|1246|0;AS_VarDP=0|29|0;DP=37;QUALapprox=1246;RAW_GT_COUNT=0,0,1;RAW_MQandDP=117680,37;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:1246,0,1247:0,0,20,9 +chrX 1424366 . A . . END=1424385 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,763 +chrX 1424386 . G C, 1343.04 . AS_QUALapprox=|1353|0;AS_VarDP=0|31|0;DP=36;QUALapprox=1353;RAW_GT_COUNT=0,0,1;RAW_MQandDP=103025,36;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1353,0,1353:0,0,21,10 +chrX 1424387 . T . . END=1424401 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,848 +chrX 1424402 . G A, 1345.04 . AS_QUALapprox=|1355|0;AS_VarDP=0|32|0;DP=39;QUALapprox=1355;RAW_GT_COUNT=0,0,1;RAW_MQandDP=110850,39;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1355,0,1356:0,0,22,10 +chrX 1424403 . T . . END=1424437 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,904 +chrX 1424438 . G A, 1241.04 . AS_QUALapprox=|1251|0;AS_VarDP=0|38|0;DP=41;QUALapprox=1251;RAW_GT_COUNT=0,0,1;RAW_MQandDP=124025,41;VarDP=38 GT:AD:DP:GQ:PL:SB 1:0,38,0:38:99:1251,0,1251:0,0,24,14 +chrX 1424439 . T . . END=1424470 GT:DP:GQ:MIN_DP:PL 0:40:99:40:0,1011 +chrX 1424471 . C T, 1351.04 . AS_QUALapprox=|1361|0;AS_VarDP=0|43|0;DP=49;QUALapprox=1361;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158903,49;VarDP=43 GT:AD:DP:GQ:PL:SB 1:0,43,0:43:99:1361,0,1361:0,0,28,15 +chrX 1424472 . A . . END=1424535 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1250 +chrX 1424536 . C T, 1901.03 . AS_QUALapprox=|1911|0;AS_VarDP=0|46|0;DP=48;QUALapprox=1911;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=46 GT:AD:DP:GQ:PL:SB 1:0,46,0:46:99:1911,0,1932:0,0,25,20 +chrX 1424537 . C . . END=1424556 GT:DP:GQ:MIN_DP:PL 0:43:99:43:0,1258 +chrX 1424557 . CATCT C, 1533.01 . AS_QUALapprox=|1543|0;AS_VarDP=0|36|0;DP=44;QUALapprox=1543;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158400,44;VarDP=36 GT:AD:DP:GQ:PL:SB 1:0,36,0:36:99:1543,0,1543:0,0,19,17 +chrX 1424562 . G . . END=1424677 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,1035 +chrX 1424678 . A G, 194.04 . AS_QUALapprox=|204|0;AS_VarDP=14|20|0;BaseQRankSum=0.247;DP=38;MQRankSum=0.000;QUALapprox=204;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;ReadPosRankSum=0.648;VarDP=34 GT:AD:DP:GQ:PL:SB 1:14,20,0:34:99:204,0,595:6,8,9,11 +chrX 1424679 . T . . END=1424852 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,855 +chrX 1424853 . T TCCAC, 564.01 . AS_QUALapprox=|574|0;AS_VarDP=0|13|0;DP=20;QUALapprox=574;RAW_GT_COUNT=0,0,1;RAW_MQandDP=72000,20;VarDP=13 GT:AD:DP:GQ:PL:SB 1:0,13,0:13:99:574,0,575:0,0,0,13 +chrX 1424854 . C . . END=1424938 GT:DP:GQ:MIN_DP:PL 0:20:99:20:0,466 +chrX 1424939 . A C, 1251.04 . AS_QUALapprox=|1261|0;AS_VarDP=0|29|0;DP=30;QUALapprox=1261;RAW_GT_COUNT=0,0,1;RAW_MQandDP=96640,30;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:1261,0,1261:0,0,11,18 +chrX 1424940 . A . . END=1424963 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,829 +chrX 1424964 . A G, 929.04 . AS_QUALapprox=|1376|0;AS_VarDP=0|31|0;DP=32;QUALapprox=1376;RAW_GT_COUNT=0,0,1;RAW_MQandDP=102841,32;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1376,0,1152:0,0,13,15 +chrX 1424965 . T . . END=1424966 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,978 +chrX 1424967 . CA C, 899.01 . AS_QUALapprox=|909|0;AS_VarDP=2|28|0;BaseQRankSum=-0.400;DP=33;MQRankSum=0.427;QUALapprox=909;RAW_GT_COUNT=0,0,1;RAW_MQandDP=106441,33;ReadPosRankSum=-1.165;VarDP=30 GT:AD:DP:GQ:PL:SB 1:2,28,0:30:99:909,0,928:1,1,13,15 +chrX 1424969 . TCCC T, 899.01 . AS_QUALapprox=|909|0;AS_VarDP=2|28|0;BaseQRankSum=-0.288;DP=34;MQRankSum=0.427;QUALapprox=909;RAW_GT_COUNT=0,0,1;RAW_MQandDP=110041,34;ReadPosRankSum=-1.206;VarDP=30 GT:AD:DP:GQ:PL:SB 1:2,28,0:30:99:909,0,928:1,1,13,15 +chrX 1424973 . T . . END=1424980 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,1058 +chrX 1424981 . TCCATCTATCCACCTACCATCCATCCATCCATCCATCCATCCTTCCTC T, 1302.01 . AS_QUALapprox=|1312|0;AS_VarDP=0|30|0;DP=39;QUALapprox=1312;RAW_GT_COUNT=0,0,1;RAW_MQandDP=128041,39;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:1312,0,1312:0,0,17,13 +chrX 1425029 . C . . END=1425067 GT:DP:GQ:MIN_DP:PL 0:38:99:38:0,360 +chrX 1425068 . C G, 1299.04 . AS_QUALapprox=|1309|0;AS_VarDP=0|42|0;DP=49;QUALapprox=1309;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165040,49;VarDP=42 GT:AD:DP:GQ:PL:SB 1:0,42,0:42:99:1309,0,1309:0,0,22,20 +chrX 1425069 . C . . END=1425141 GT:DP:GQ:MIN_DP:PL 0:47:99:47:0,1151 +chrX 1425142 . A G, 1701.04 . AS_QUALapprox=|1711|0;AS_VarDP=0|54|0;DP=58;QUALapprox=1711;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=54 GT:AD:DP:GQ:PL:SB 1:0,54,0:54:99:1711,0,1711:0,0,26,28 +chrX 1425143 . T . . END=1425190 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1671 +chrX 1425191 . G A, 1859.04 . AS_QUALapprox=|1869|0;AS_VarDP=0|60|0;DP=63;QUALapprox=1869;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:1869,0,1869:0,0,32,28 +chrX 1425192 . T . . END=1425378 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1800 +chrX 1425379 . A C, 2226.04 . AS_QUALapprox=|2236|0;AS_VarDP=0|68|0;DP=70;QUALapprox=2236;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,68,0:68:99:2236,0,2236:0,0,39,29 +chrX 1425380 . C . . END=1425428 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1800 +chrX 1425429 . G C, 2181.04 . AS_QUALapprox=|2191|0;AS_VarDP=0|66|0;DP=69;QUALapprox=2191;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=66 GT:AD:DP:GQ:PL:SB 1:0,66,0:66:99:2191,0,2191:0,0,40,26 +chrX 1425430 . C . . END=1425439 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1800 +chrX 1425440 . C T, 2139.04 . AS_QUALapprox=|2149|0;AS_VarDP=0|65|0;DP=67;QUALapprox=2149;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,65,0:65:99:2149,0,2149:0,0,39,26 +chrX 1425441 . G . . END=1425777 GT:DP:GQ:MIN_DP:PL 0:78:99:78:0,1800 +chrX 1425778 . G A, 2542.04 . AS_QUALapprox=|2552|0;AS_VarDP=1|77|0;BaseQRankSum=2.505;DP=79;MQRankSum=0.000;QUALapprox=2552;RAW_GT_COUNT=0,0,1;RAW_MQandDP=284400,79;ReadPosRankSum=0.178;VarDP=78 GT:AD:DP:GQ:PL:SB 1:1,77,0:78:99:2552,0,2577:1,0,27,50 +chrX 1425779 . G . . END=1425852 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1800 +chrX 1425853 . T C, 1965.04 . AS_QUALapprox=|1975|0;AS_VarDP=3|62|0;BaseQRankSum=3.458;DP=67;MQRankSum=0.000;QUALapprox=1975;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;ReadPosRankSum=-1.220;VarDP=65 GT:AD:DP:GQ:PL:SB 1:3,62,0:65:99:1975,0,2100:2,1,28,34 +chrX 1425854 . A . . END=1425945 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1800 +chrX 1425946 . A G, 2290.04 . AS_QUALapprox=|2300|0;AS_VarDP=1|70|0;BaseQRankSum=-0.312;DP=72;MQRankSum=0.000;QUALapprox=2300;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;ReadPosRankSum=0.903;VarDP=71 GT:AD:DP:GQ:PL:SB 1:1,70,0:71:99:2300,0,2335:0,1,36,34 +chrX 1425947 . C . . END=1425990 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1800 +chrX 1425991 . C T, 2194.04 . AS_QUALapprox=|2204|0;AS_VarDP=0|66|0;DP=69;QUALapprox=2204;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=66 GT:AD:DP:GQ:PL:SB 1:0,66,0:66:99:2204,0,2204:0,0,33,33 +chrX 1425992 . T . . END=1426158 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1800 +chrX 1426159 . A G, 1890.04 . AS_QUALapprox=|1900|0;AS_VarDP=1|62|0;BaseQRankSum=-0.619;DP=66;MQRankSum=0.000;QUALapprox=1900;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237481,66;ReadPosRankSum=-0.330;VarDP=63 GT:AD:DP:GQ:PL:SB 1:1,62,0:63:99:1900,0,1934:0,1,30,32 +chrX 1426160 . G . . END=1426219 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1800 +chrX 1426220 . T C, 2084.04 . AS_QUALapprox=|2094|0;AS_VarDP=1|66|0;BaseQRankSum=-0.594;DP=71;MQRankSum=-0.088;QUALapprox=2094;RAW_GT_COUNT=0,0,1;RAW_MQandDP=253010,71;ReadPosRankSum=0.052;VarDP=67 GT:AD:DP:GQ:PL:SB 1:1,66,0:67:99:2094,0,2129:0,1,23,43 +chrX 1426221 . G . . END=1426270 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1800 +chrX 1426271 . A G, 2187.04 . AS_QUALapprox=|2197|0;AS_VarDP=0|65|0;DP=65;QUALapprox=2197;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,65,0:65:99:2197,0,2197:0,0,28,37 +chrX 1426272 . C . . END=1426321 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1800 +chrX 1426322 . C T, 1787.04 . AS_QUALapprox=|1797|0;AS_VarDP=1|53|0;BaseQRankSum=0.000;DP=55;MQRankSum=0.000;QUALapprox=1797;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;ReadPosRankSum=1.059;VarDP=54 GT:AD:DP:GQ:PL:SB 1:1,53,0:54:99:1797,0,1832:1,0,28,25 +chrX 1426323 . G . . END=1426397 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1800 +chrX 1426398 . A G, 1691.04 . AS_QUALapprox=|1701|0;AS_VarDP=1|55|0;BaseQRankSum=-0.504;DP=58;MQRankSum=0.000;QUALapprox=1701;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;ReadPosRankSum=-0.836;VarDP=56 GT:AD:DP:GQ:PL:SB 1:1,55,0:56:99:1701,0,1735:1,0,36,19 +chrX 1426399 . T . . END=1426721 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1742 +chrX 1426722 . G A, 1894.04 . AS_QUALapprox=|1904|0;AS_VarDP=1|59|0;BaseQRankSum=2.418;DP=66;MQRankSum=0.000;QUALapprox=1904;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237025,66;ReadPosRankSum=1.329;VarDP=60 GT:AD:DP:GQ:PL:SB 1:1,59,0:60:99:1904,0,1913:0,1,25,34 +chrX 1426723 . G . . END=1426793 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1786 +chrX 1426794 . T C, 1855.04 . AS_QUALapprox=|1865|0;AS_VarDP=0|57|0;DP=60;QUALapprox=1865;RAW_GT_COUNT=0,0,1;RAW_MQandDP=215425,60;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:1865,0,1865:0,0,27,30 +chrX 1426795 . A . . END=1426890 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1460 +chrX 1426891 . G T, 2355.04 . AS_QUALapprox=|2365|0;AS_VarDP=1|53|0;BaseQRankSum=1.906;DP=54;MQRankSum=-0.162;QUALapprox=2365;RAW_GT_COUNT=0,0,1;RAW_MQandDP=191589,54;ReadPosRankSum=1.633;VarDP=54 GT:AD:DP:GQ:PL:SB 1:1,53,0:54:99:2365,0,2375:1,0,26,27 +chrX 1426892 . A . . END=1426895 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1618 +chrX 1426896 . T C, 2375.04 . AS_QUALapprox=|2385|0;AS_VarDP=0|53|0;DP=53;QUALapprox=2385;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187989,53;VarDP=53 GT:AD:DP:GQ:PL:SB 1:0,53,0:53:99:2385,0,2385:0,0,26,27 +chrX 1426897 . C . . END=1426914 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1527 +chrX 1426915 . A G, 2600.04 . AS_QUALapprox=|2610|0;AS_VarDP=0|58|0;DP=58;QUALapprox=2610;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205414,58;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,58,0:58:99:2610,0,2610:0,0,28,30 +chrX 1426916 . G . . END=1426937 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1623 +chrX 1426938 . A G, 2680.04 . AS_QUALapprox=|2690|0;AS_VarDP=0|60|0;DP=60;QUALapprox=2690;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212614,60;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:2690,0,2690:0,0,30,30 +chrX 1426939 . T C, 2680.04 . AS_QUALapprox=|2690|0;AS_VarDP=0|60|0;DP=60;QUALapprox=2690;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212614,60;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:2690,0,2690:0,0,30,30 +chrX 1426940 . G . . END=1427001 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1681 +chrX 1427002 . A AAAAC, 2245.01 . AS_QUALapprox=|2255|0;AS_VarDP=0|52|0;DP=72;QUALapprox=2255;RAW_GT_COUNT=0,0,1;RAW_MQandDP=256389,72;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:2255,0,2257:0,0,30,22 +chrX 1427003 . A . . END=1427008 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1335 +chrX 1427009 . G A, 2484.04 . AS_QUALapprox=|2797|0;AS_VarDP=0|65|0;DP=70;QUALapprox=2797;RAW_GT_COUNT=0,0,1;RAW_MQandDP=249189,70;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,65,0:65:99:2797,0,2632:0,0,30,22 +chrX 1427010 . A . . END=1427036 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1800 +chrX 1427037 . C T, 2585.04 . AS_QUALapprox=|2595|0;AS_VarDP=0|80|0;DP=85;QUALapprox=2595;RAW_GT_COUNT=0,0,1;RAW_MQandDP=303425,85;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,80,0:80:99:2595,0,2595:0,0,51,29 +chrX 1427038 . G . . END=1427157 GT:DP:GQ:MIN_DP:PL 0:88:99:88:0,1800 +chrX 1427158 . T G, 2516.04 . AS_QUALapprox=|2526|0;AS_VarDP=1|78|0;BaseQRankSum=2.117;DP=81;MQRankSum=0.000;QUALapprox=2526;RAW_GT_COUNT=0,0,1;RAW_MQandDP=291600,81;ReadPosRankSum=0.022;VarDP=79 GT:AD:DP:GQ:PL:SB 1:1,78,0:79:99:2526,0,2550:1,0,44,34 +chrX 1427159 . G . . END=1427223 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1752 +chrX 1427224 . C G, 1939.04 . AS_QUALapprox=|1949|0;AS_VarDP=0|60|0;DP=64;QUALapprox=1949;RAW_GT_COUNT=0,0,1;RAW_MQandDP=228400,64;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:1949,0,1949:0,0,24,36 +chrX 1427225 . T . . END=1427304 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1628 +chrX 1427305 . C T, 1988.04 . AS_QUALapprox=|1998|0;AS_VarDP=0|59|0;DP=62;QUALapprox=1998;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:1998,0,1998:0,0,18,41 +chrX 1427306 . T . . END=1427401 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1800 +chrX 1427402 . A G, 2446.04 . AS_QUALapprox=|2456|0;AS_VarDP=0|74|0;DP=74;QUALapprox=2456;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,74,0:74:99:2456,0,2456:0,0,41,33 +chrX 1427403 . A . . END=1427476 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1800 +chrX 1427477 . A G, 2376.04 . AS_QUALapprox=|2386|0;AS_VarDP=0|76|0;DP=77;QUALapprox=2386;RAW_GT_COUNT=0,0,1;RAW_MQandDP=277200,77;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,76,0:76:99:2386,0,2386:0,0,49,27 +chrX 1427478 . C . . END=1427523 GT:DP:GQ:MIN_DP:PL 0:77:99:77:0,1800 +chrX 1427524 . C G, 2438.04 . AS_QUALapprox=|2448|0;AS_VarDP=2|79|0;BaseQRankSum=2.511;DP=83;MQRankSum=0.000;QUALapprox=2448;RAW_GT_COUNT=0,0,1;RAW_MQandDP=298800,83;ReadPosRankSum=0.411;VarDP=81 GT:AD:DP:GQ:PL:SB 1:2,79,0:81:99:2448,0,2482:1,1,48,31 +chrX 1427525 . G . . END=1427898 GT:DP:GQ:MIN_DP:PL 0:76:99:76:0,1800 +chrX 1427899 . G A, 2188.04 . AS_QUALapprox=|2198|0;AS_VarDP=0|70|0;DP=75;QUALapprox=2198;RAW_GT_COUNT=0,0,1;RAW_MQandDP=267076,75;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,70,0:70:99:2198,0,2198:0,0,32,38 +chrX 1427900 . C . . END=1427982 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1800 +chrX 1427983 . A G, 2189.04 . AS_QUALapprox=|2199|0;AS_VarDP=0|66|0;DP=69;QUALapprox=2199;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=66 GT:AD:DP:GQ:PL:SB 1:0,66,0:66:99:2199,0,2199:0,0,33,33 +chrX 1427984 . C . . END=1428176 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1528 +chrX 1428177 . G C, 2635.04 . AS_QUALapprox=|2645|0;AS_VarDP=0|61|0;DP=63;QUALapprox=2645;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226225,63;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,61,0:61:99:2645,0,2645:0,0,24,37 +chrX 1428178 . A . . END=1428197 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1800 +chrX 1428198 . C A, 2774.04 . AS_QUALapprox=|2784|0;AS_VarDP=0|65|0;DP=67;QUALapprox=2784;RAW_GT_COUNT=0,0,1;RAW_MQandDP=240625,67;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,65,0:65:99:2784,0,2784:0,0,26,39 +chrX 1428199 . G . . END=1428321 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,109 +chrX 1428322 . CA C, 745.01 . AS_QUALapprox=|755|0;AS_VarDP=1|32|0;BaseQRankSum=-0.391;DP=49;MQRankSum=0.000;QUALapprox=755;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;ReadPosRankSum=0.894;VarDP=33 GT:AD:DP:GQ:PL:SB 1:1,32,0:33:99:755,0,779:1,0,23,9 +chrX 1428324 . A . . END=1428595 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1419 +chrX 1428596 . G A, 2135.04 . AS_QUALapprox=|2145|0;AS_VarDP=0|65|0;DP=67;QUALapprox=2145;RAW_GT_COUNT=0,0,1;RAW_MQandDP=214339,67;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,65,0:65:99:2145,0,2145:0,0,21,44 +chrX 1428597 . A . . END=1428645 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1777 +chrX 1428646 . C CAAATAAATAAATAAATAAAT,CAAATAAATAAATAAATAAATAAATAAAT, 1731.01 . AS_QUALapprox=|1741|1142|0;AS_VarDP=0|27|14|0;DP=72;QUALapprox=1741;RAW_GT_COUNT=0,0,1;RAW_MQandDP=228855,72;VarDP=41 GT:AD:DP:GQ:PL:SB 1:0,27,14,0:41:99:1741,0,599,1474:0,0,18,23 +chrX 1428647 . A . . END=1428742 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1537 +chrX 1428743 . T C, 1576.04 . AS_QUALapprox=|1586|0;AS_VarDP=0|53|0;DP=57;QUALapprox=1586;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=53 GT:AD:DP:GQ:PL:SB 1:0,53,0:53:99:1586,0,1586:0,0,30,23 +chrX 1428744 . C . . END=1429137 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1410 +chrX 1429138 . G A, 1641.04 . AS_QUALapprox=|1651|0;AS_VarDP=0|43|0;DP=46;QUALapprox=1651;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165136,46;VarDP=43 GT:AD:DP:GQ:PL:SB 1:0,43,0:43:99:1651,0,1651:0,0,22,21 +chrX 1429139 . C . . END=1429147 GT:DP:GQ:MIN_DP:PL 0:42:99:42:0,1236 +chrX 1429148 . G GC, 0.05 . AS_QUALapprox=|6|0;AS_VarDP=21|21|0;BaseQRankSum=0.427;DP=44;MQRankSum=0.000;QUALapprox=6;RAW_GT_COUNT=0,0,1;RAW_MQandDP=157936,44;ReadPosRankSum=-0.252;VarDP=42 GT:AD:DP:GQ:PL:SB 1:21,21,0:42:6:6,0,651:7,14,14,7 +chrX 1429149 . C . . END=1429557 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,1295 +chrX 1429558 . G A, 1606.04 . AS_QUALapprox=|1616|0;AS_VarDP=0|48|0;DP=50;QUALapprox=1616;RAW_GT_COUNT=0,0,1;RAW_MQandDP=179425,50;VarDP=48 GT:AD:DP:GQ:PL:SB 1:0,48,0:48:99:1616,0,1616:0,0,28,20 +chrX 1429559 . A . . END=1430702 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1517 +chrX 1430703 . C T, 2103.04 . AS_QUALapprox=|2113|0;AS_VarDP=0|67|0;DP=71;QUALapprox=2113;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,67,0:67:99:2113,0,2113:0,0,31,36 +chrX 1430704 . T . . END=1430990 GT:DP:GQ:MIN_DP:PL 0:73:99:73:0,1800 +chrX 1430991 . CTT C, 362.01 . AS_QUALapprox=|372|0;AS_VarDP=27|35|0;BaseQRankSum=-1.711;DP=63;MQRankSum=0.000;QUALapprox=372;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;ReadPosRankSum=-0.190;VarDP=62 GT:AD:DP:GQ:PL:SB 1:27,35,0:62:99:372,0,1565:13,14,17,18 +chrX 1430994 . T . . END=1431354 GT:DP:GQ:MIN_DP:PL 0:75:99:75:0,1800 +chrX 1431355 . T A, 2340.04 . AS_QUALapprox=|2350|0;AS_VarDP=0|69|0;DP=74;QUALapprox=2350;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,69,0:69:99:2350,0,2350:0,0,37,32 +chrX 1431356 . A . . END=1431639 GT:DP:GQ:MIN_DP:PL 0:75:99:75:0,1716 +chrX 1431640 . T A, 2737.04 . AS_QUALapprox=|2747|0;AS_VarDP=0|84|0;DP=88;QUALapprox=2747;RAW_GT_COUNT=0,0,1;RAW_MQandDP=316800,88;VarDP=84 GT:AD:DP:GQ:PL:SB 1:0,84,0:84:99:2747,0,2747:0,0,31,53 +chrX 1431641 . T . . END=1431803 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1800 +chrX 1431804 . G A, 3060.04 . AS_QUALapprox=|3070|0;AS_VarDP=0|71|0;DP=72;QUALapprox=3070;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,71,0:71:99:3070,0,3070:0,0,40,31 +chrX 1431805 . C . . END=1431820 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1800 +chrX 1431821 . A T, 2945.04 . AS_QUALapprox=|2955|0;AS_VarDP=0|68|0;DP=68;QUALapprox=2955;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,68,0:68:99:2955,0,2955:0,0,38,30 +chrX 1431822 . A . . END=1432076 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1622 +chrX 1432077 . C G, 1534.04 . AS_QUALapprox=|1544|0;AS_VarDP=0|46|0;DP=49;QUALapprox=1544;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=46 GT:AD:DP:GQ:PL:SB 1:0,46,0:46:99:1544,0,1544:0,0,17,29 +chrX 1432078 . C . . END=1432759 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1483 +chrX 1432760 . T C, 3410.04 . AS_QUALapprox=|3420|0;AS_VarDP=0|76|0;DP=81;QUALapprox=3420;RAW_GT_COUNT=0,0,1;RAW_MQandDP=267533,81;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,76,0:76:99:3420,0,3420:0,0,31,45 +chrX 1432761 . G . . END=1432761 GT:DP:GQ:MIN_DP:PL 0:73:99:73:0,1800 +chrX 1432762 . C G, 3455.04 . AS_QUALapprox=|3465|0;AS_VarDP=0|77|0;DP=81;QUALapprox=3465;RAW_GT_COUNT=0,0,1;RAW_MQandDP=269108,81;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,77,0:77:99:3465,0,3465:0,0,31,46 +chrX 1432763 . A . . END=1432785 GT:DP:GQ:MIN_DP:PL 0:79:99:79:0,1800 +chrX 1432786 . G A, 3770.04 . AS_QUALapprox=|3780|0;AS_VarDP=0|84|0;DP=88;QUALapprox=3780;RAW_GT_COUNT=0,0,1;RAW_MQandDP=294427,88;VarDP=84 GT:AD:DP:GQ:PL:SB 1:0,84,0:84:99:3780,0,3780:0,0,36,48 +chrX 1432787 . C . . END=1432788 GT:DP:GQ:MIN_DP:PL 0:81:99:81:0,1800 +chrX 1432789 . C A, 3805.04 . AS_QUALapprox=|3815|0;AS_VarDP=0|85|0;DP=90;QUALapprox=3815;RAW_GT_COUNT=0,0,1;RAW_MQandDP=301627,90;VarDP=85 GT:AD:DP:GQ:PL:SB 1:0,85,0:85:99:3815,0,3815:0,0,36,49 +chrX 1432790 . C . . END=1432954 GT:DP:GQ:MIN_DP:PL 0:116:99:116:0,1075 +chrX 1432955 . G A, 4214.04 . AS_QUALapprox=|4224|0;AS_VarDP=0|98|0;DP=108;QUALapprox=4224;RAW_GT_COUNT=0,0,1;RAW_MQandDP=345934,108;VarDP=98 GT:AD:DP:GQ:PL:SB 1:0,98,0:98:99:4224,0,4224:0,0,58,40 +chrX 1432956 . G . . END=1432966 GT:DP:GQ:MIN_DP:PL 0:93:99:93:0,1800 +chrX 1432967 . A G, 4169.04 . AS_QUALapprox=|4179|0;AS_VarDP=0|94|0;DP=103;QUALapprox=4179;RAW_GT_COUNT=0,0,1;RAW_MQandDP=333009,103;VarDP=94 GT:AD:DP:GQ:PL:SB 1:0,94,0:94:99:4179,0,4179:0,0,56,38 +chrX 1432968 . T G, 4099.04 . AS_QUALapprox=|4109|0;AS_VarDP=0|92|0;DP=103;QUALapprox=4109;RAW_GT_COUNT=0,0,1;RAW_MQandDP=333009,103;VarDP=92 GT:AD:DP:GQ:PL:SB 1:0,92,0:92:99:4109,0,4109:0,0,55,37 +chrX 1432969 . G . . END=1433500 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1046 +chrX 1433501 . TA T,TAA, 71 . AS_QUALapprox=|68|81|0;AS_VarDP=1|11|11|0;BaseQRankSum=-0.503;DP=43;MQRankSum=0.000;QUALapprox=81;RAW_GT_COUNT=0,0,1;RAW_MQandDP=146800,43;ReadPosRankSum=-0.158;VarDP=23 GT:AD:DP:GQ:PL:SB 2:1,11,11,0:23:13:81,13,0,209:1,0,12,10 +chrX 1433503 . A . . END=1433934 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1198 +chrX 1433935 . G A, 33.04 . AS_QUALapprox=|43|0;AS_VarDP=30|32|0;BaseQRankSum=-1.321;DP=62;MQRankSum=0.000;QUALapprox=43;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;ReadPosRankSum=0.853;VarDP=62 GT:AD:DP:GQ:PL:SB 1:30,32,0:62:43:43,0,1048:16,14,20,12 +chrX 1433936 . G . . END=1434358 GT:DP:GQ:MIN_DP:PL 0:74:99:74:0,272 +chrX 1434359 . G . . END=1434359 GT:DP:GQ:MIN_DP:PL 0:52:0:52:0,0 +chrX 1434360 . T . . END=1436438 GT:DP:GQ:MIN_DP:PL 0:56:23:56:0,23 +chrX 1436439 . G A, 348.04 . AS_QUALapprox=|358|0;AS_VarDP=13|23|0;BaseQRankSum=1.169;DP=40;MQRankSum=0.405;QUALapprox=358;RAW_GT_COUNT=0,0,1;RAW_MQandDP=116623,40;ReadPosRankSum=-0.791;VarDP=36 GT:AD:DP:GQ:PL:SB 1:13,23,0:36:99:358,0,790:7,6,15,8 +chrX 1436440 . C . . END=1436496 GT:DP:GQ:MIN_DP:PL 0:44:99:44:0,1256 +chrX 1436497 . C T, 272.04 . AS_QUALapprox=|282|0;AS_VarDP=18|28|0;BaseQRankSum=-1.077;DP=51;MQRankSum=1.971;QUALapprox=282;RAW_GT_COUNT=0,0,1;RAW_MQandDP=138760,51;ReadPosRankSum=0.259;VarDP=46 GT:AD:DP:GQ:PL:SB 1:18,28,0:46:99:282,0,892:14,4,15,13 +chrX 1436498 . G . . END=1436647 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,253 +chrX 1436648 . G A, 11.04 . AS_QUALapprox=|21|0;AS_VarDP=39|35|0;BaseQRankSum=2.539;DP=74;MQRankSum=0.000;QUALapprox=21;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;ReadPosRankSum=0.569;VarDP=74 GT:AD:DP:GQ:PL:SB 1:39,35,0:74:21:21,0,1176:20,19,14,21 +chrX 1436649 . G . . END=1436926 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,486 +chrX 1436927 . T C, 109.04 . AS_QUALapprox=|119|0;AS_VarDP=32|36|0;BaseQRankSum=0.418;DP=73;MQRankSum=0.000;QUALapprox=119;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;ReadPosRankSum=-0.326;VarDP=68 GT:AD:DP:GQ:PL:SB 1:32,36,0:68:99:119,0,1151:16,16,18,18 +chrX 1436928 . C . . END=1437034 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1240 +chrX 1437035 . C G, 198.04 . AS_QUALapprox=|208|0;AS_VarDP=16|22|0;BaseQRankSum=-0.548;DP=42;MQRankSum=-0.800;QUALapprox=208;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151081,42;ReadPosRankSum=-1.095;VarDP=38 GT:AD:DP:GQ:PL:SB 1:16,22,0:38:99:208,0,714:4,12,11,11 +chrX 1437036 . T . . END=1437894 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,728 +chrX 1437895 . CA C, 3.16 . AS_QUALapprox=|13|0;AS_VarDP=28|27|0;BaseQRankSum=1.039;DP=69;MQRankSum=0.000;QUALapprox=13;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;ReadPosRankSum=1.896;VarDP=55 GT:AD:DP:GQ:PL:SB 1:28,27,0:55:13:13,0,733:12,16,9,18 +chrX 1437897 . A . . END=1438206 GT:DP:GQ:MIN_DP:PL 0:74:39:73:0,39 +chrX 1438207 . C A, 162.04 . AS_QUALapprox=|172|0;AS_VarDP=38|38|0;BaseQRankSum=2.920;DP=79;MQRankSum=0.000;QUALapprox=172;RAW_GT_COUNT=0,0,1;RAW_MQandDP=284400,79;ReadPosRankSum=-0.587;VarDP=76 GT:AD:DP:GQ:PL:SB 1:38,38,0:76:99:172,0,1271:13,25,17,21 +chrX 1438208 . G . . END=1438281 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1800 +chrX 1438282 . CA C, 1498.01 . AS_QUALapprox=|1508|0;AS_VarDP=1|55|0;BaseQRankSum=-0.324;DP=67;MQRankSum=0.000;QUALapprox=1508;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;ReadPosRankSum=-0.866;VarDP=56 GT:AD:DP:GQ:PL:SB 1:1,55,0:56:99:1508,0,1535:1,0,34,21 +chrX 1438284 . A . . END=1438380 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1800 +chrX 1438381 . C G, 213.04 . AS_QUALapprox=|223|0;AS_VarDP=31|41|0;BaseQRankSum=-2.665;DP=75;MQRankSum=0.000;QUALapprox=223;RAW_GT_COUNT=0,0,1;RAW_MQandDP=270000,75;ReadPosRankSum=-2.417;VarDP=72 GT:AD:DP:GQ:PL:SB 1:31,41,0:72:99:223,0,1245:19,12,18,23 +chrX 1438382 . A . . END=1438386 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1800 +chrX 1438387 . A T, 3189.04 . AS_QUALapprox=|3199|0;AS_VarDP=0|72|0;DP=73;QUALapprox=3199;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,72,0:72:99:3199,0,3199:0,0,36,36 +chrX 1438388 . G . . END=1438410 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1800 +chrX 1438411 . T C, 3130.04 . AS_QUALapprox=|3140|0;AS_VarDP=0|70|0;DP=71;QUALapprox=3140;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,70,0:70:99:3140,0,3140:0,0,34,36 +chrX 1438412 . A . . END=1438413 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1800 +chrX 1438414 . G C, 3130.04 . AS_QUALapprox=|3140|0;AS_VarDP=0|70|0;DP=73;QUALapprox=3140;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,70,0:70:99:3140,0,3140:0,0,34,36 +chrX 1438415 . A . . END=1439178 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1751 +chrX 1439179 . G A, 279.04 . AS_QUALapprox=|289|0;AS_VarDP=23|30|0;BaseQRankSum=1.573;DP=55;MQRankSum=0.000;QUALapprox=289;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;ReadPosRankSum=0.530;VarDP=53 GT:AD:DP:GQ:PL:SB 1:23,30,0:53:99:289,0,993:17,6,17,13 +chrX 1439180 . T . . END=1439281 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,1404 +chrX 1439282 . A G, 38.04 . AS_QUALapprox=|48|0;AS_VarDP=23|27|0;BaseQRankSum=-1.984;DP=52;MQRankSum=0.000;QUALapprox=48;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;ReadPosRankSum=-0.419;VarDP=50 GT:AD:DP:GQ:PL:SB 1:23,27,0:50:48:48,0,823:13,10,12,15 +chrX 1439283 . A . . END=1439312 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1497 +chrX 1439313 . G C, 1930.04 . AS_QUALapprox=|1940|0;AS_VarDP=0|57|0;DP=60;QUALapprox=1940;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:1940,0,1940:0,0,27,30 +chrX 1439314 . C . . END=1439644 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1800 +chrX 1439645 . G . . END=1439645 GT:DP:GQ:MIN_DP:PL 0:66:5:66:0,5 +chrX 1439646 . A . . END=1439835 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1062 +chrX 1439836 . CA C, 73.01 . AS_QUALapprox=|83|0;AS_VarDP=17|19|0;BaseQRankSum=-1.193;DP=48;MQRankSum=1.113;QUALapprox=83;RAW_GT_COUNT=0,0,1;RAW_MQandDP=170800,48;ReadPosRankSum=0.781;VarDP=36 GT:AD:DP:GQ:PL:SB 1:17,19,0:36:83:83,0,507:8,9,9,10 +chrX 1439838 . A . . END=1440077 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,1035 +chrX 1440078 . T . . END=1440081 GT:DP:GQ:MIN_DP:PL 0:51:0:51:0,0 +chrX 1440082 . T . . END=1440149 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1314 +chrX 1440150 . G A, 11.04 . AS_QUALapprox=|21|0;AS_VarDP=30|27|0;BaseQRankSum=2.934;DP=60;MQRankSum=0.984;QUALapprox=21;RAW_GT_COUNT=0,0,1;RAW_MQandDP=214000,60;ReadPosRankSum=0.288;VarDP=57 GT:AD:DP:GQ:PL:SB 1:30,27,0:57:21:21,0,909:20,10,14,13 +chrX 1440151 . A . . END=1442104 GT:DP:GQ:MIN_DP:PL 0:76:99:76:0,1405 +chrX 1442105 . G A, 2040.04 . AS_QUALapprox=|2050|0;AS_VarDP=0|62|0;DP=65;QUALapprox=2050;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:2050,0,2050:0,0,34,28 +chrX 1442106 . T . . END=1442797 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1700 +chrX 1442798 . T C, 367.04 . AS_QUALapprox=|377|0;AS_VarDP=25|35|0;BaseQRankSum=-0.084;DP=62;MQRankSum=0.000;QUALapprox=377;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;ReadPosRankSum=0.660;VarDP=60 GT:AD:DP:GQ:PL:SB 1:25,35,0:60:99:377,0,1166:15,10,22,13 +chrX 1442799 . A . . END=1442905 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1578 +chrX 1442906 . A T, 1413.04 . AS_QUALapprox=|1423|0;AS_VarDP=0|45|0;DP=46;QUALapprox=1423;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;VarDP=45 GT:AD:DP:GQ:PL:SB 1:0,45,0:45:99:1423,0,1423:0,0,23,22 +chrX 1442907 . G . . END=1443048 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,1385 +chrX 1443049 . A G, 2298.04 . AS_QUALapprox=|2308|0;AS_VarDP=2|55|0;BaseQRankSum=2.731;DP=58;MQRankSum=-0.204;QUALapprox=2308;RAW_GT_COUNT=0,0,1;RAW_MQandDP=206834,58;ReadPosRankSum=-0.090;VarDP=57 GT:AD:DP:GQ:PL:SB 1:2,55,0:57:99:2308,0,2343:2,0,27,28 +chrX 1443050 . C . . END=1443057 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1732 +chrX 1443058 . G GAC, 2697.01 . AS_QUALapprox=|2707|0;AS_VarDP=2|65|0;BaseQRankSum=0.818;DP=69;MQRankSum=-0.257;QUALapprox=2707;RAW_GT_COUNT=0,0,1;RAW_MQandDP=245068,69;ReadPosRankSum=0.147;VarDP=67 GT:AD:DP:GQ:PL:SB 1:2,65,0:67:99:2707,0,2741:2,0,33,32 +chrX 1443059 . A . . END=1443139 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1701 +chrX 1443140 . C T, 420.04 . AS_QUALapprox=|430|0;AS_VarDP=4|20|0;BaseQRankSum=0.127;DP=66;MQRankSum=2.493;QUALapprox=430;RAW_GT_COUNT=0,0,1;RAW_MQandDP=229300,66;ReadPosRankSum=-1.961;VarDP=24 GT:AD:DP:GQ:PL:SB 1:4,20,0:24:99:430,0,558:4,0,12,8 +chrX 1443141 . G . . END=1443162 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1623 +chrX 1443163 . G A, 481.04 . AS_QUALapprox=|491|0;AS_VarDP=4|23|0;BaseQRankSum=1.142;DP=58;MQRankSum=2.263;QUALapprox=491;RAW_GT_COUNT=0,0,1;RAW_MQandDP=195475,58;ReadPosRankSum=-1.053;VarDP=27 GT:AD:DP:GQ:PL:SB 1:4,23,0:27:99:491,0,639:4,0,14,9 +chrX 1443164 . C . . END=1443252 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1294 +chrX 1443253 . ACGCCGCCGTCTTGGACACACACCGCCATCATGGACACACACCGCCATCTTGGACACACACCGCCATCTTGGACACACACCGCCATCTTGGACAGACACCGCCATCTTGGACACACACCACCATCATGGACACACGC A,ACGCCATCTTGGACACACACCGCCATCTTGGACACACACCGCCATCTTGGACAGACACCGCCATCTTGGACACACACCACCATCATGGACACACGC,ACGCCGTCTTGGACACACACCGCCATCATGGACACACACCGCCATCTTGGACACACACCGCCATCTTGGACACACACCGCCATCTTGGACAGACACCGCCATCTTGGACACACACCACCATCATGGACACACGC, 1355.01 . AS_QUALapprox=|685|1365|871|0;AS_VarDP=0|8|11|0|0;DP=47;QUALapprox=1365;RAW_GT_COUNT=0,0,1;RAW_MQandDP=139252,47;VarDP=19 GT:AD:DP:GQ:PL:SB 2:0,8,11,0,0:19:99:1365,680,0,494,1000:0,0,10,9 +chrX 1443302 . TTGGACACACACCGCCATCTTGGACACACACCGCCATCTTGGACAGACACCGCCATCTTGGACACACACCACCATCA *,T, 47.47 . AS_QUALapprox=|0|1225|0;AS_VarDP=0|8|9|0;DP=43;QUALapprox=1225;RAW_GT_COUNT=0,0,1;RAW_MQandDP=130058,43;VarDP=17 GT:AD:DP:GQ:PL:SB 2:0,8,9,0:17:19:1225,19,0,800:0,0,10,7 +chrX 1443390 . C . . END=1443396 GT:DP:GQ:MIN_DP:PL 0:55:0:55:0,0 +chrX 1443397 . T A,*, 59.04 . AS_QUALapprox=|69|0|0;AS_VarDP=10|12|0|0;BaseQRankSum=-1.187;DP=46;MQRankSum=-0.462;QUALapprox=69;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133628,46;ReadPosRankSum=-0.463;VarDP=22 GT:AD:DP:GQ:PL:SB 1:10,12,0,0:22:69:69,0,1430,972:7,3,5,7 +chrX 1443398 . T . . END=1443406 GT:DP:GQ:MIN_DP:PL 0:45:99:45:0,315 +chrX 1443407 . G . . END=1443407 GT:DP:GQ:MIN_DP:PL 0:49:1:49:0,1 +chrX 1443408 . C . . END=1443415 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,495 +chrX 1443416 . T . . END=1443416 GT:DP:GQ:MIN_DP:PL 0:46:10:46:0,10 +chrX 1443417 . T . . END=1443586 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,799 +chrX 1443587 . C T, 2743.04 . AS_QUALapprox=|2753|0;AS_VarDP=2|67|0;BaseQRankSum=1.040;DP=70;MQRankSum=-0.358;QUALapprox=2753;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241559,70;ReadPosRankSum=0.560;VarDP=69 GT:AD:DP:GQ:PL:SB 1:2,67,0:69:99:2753,0,2797:1,1,31,36 +chrX 1443588 . G . . END=1443624 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,302 +chrX 1443625 . C T, 2851.04 . AS_QUALapprox=|2861|0;AS_VarDP=1|69|0;BaseQRankSum=1.728;DP=71;MQRankSum=-0.285;QUALapprox=2861;RAW_GT_COUNT=0,0,1;RAW_MQandDP=242297,71;ReadPosRankSum=-1.458;VarDP=70 GT:AD:DP:GQ:PL:SB 1:1,69,0:70:99:2861,0,2895:1,0,30,39 +chrX 1443626 . G . . END=1443631 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1800 +chrX 1443632 . GTGGACAGACACCGCCATCA G, 2514.01 . AS_QUALapprox=|2524|0;AS_VarDP=1|61|0;DP=71;MQRankSum=-0.305;QUALapprox=2524;RAW_GT_COUNT=0,0,1;RAW_MQandDP=239022,71;VarDP=62 GT:AD:DP:GQ:PL:SB 1:1,61,0:62:99:2524,0,2558:1,0,28,33 +chrX 1443652 . T . . END=1444108 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,424 +chrX 1444109 . A . . END=1444109 GT:DP:GQ:MIN_DP:PL 0:65:19:65:0,19 +chrX 1444110 . G . . END=1444191 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1316 +chrX 1444192 . C T, 212.04 . AS_QUALapprox=|222|0;AS_VarDP=19|25|0;BaseQRankSum=0.438;DP=46;MQRankSum=0.000;QUALapprox=222;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;ReadPosRankSum=-0.628;VarDP=44 GT:AD:DP:GQ:PL:SB 1:19,25,0:44:99:222,0,838:9,10,12,13 +chrX 1444193 . T . . END=1444207 GT:DP:GQ:MIN_DP:PL 0:44:99:44:0,1394 +chrX 1444208 . A . . END=1444209 GT:DP:GQ:MIN_DP:PL 0:47:0:47:0,0 +chrX 1444210 . T . . END=1444764 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,303 +chrX 1444765 . T C, 78.04 . AS_QUALapprox=|88|0;AS_VarDP=31|37|0;BaseQRankSum=-2.638;DP=70;MQRankSum=0.000;QUALapprox=88;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;ReadPosRankSum=0.622;VarDP=68 GT:AD:DP:GQ:PL:SB 1:31,37,0:68:88:88,0,1156:20,11,21,16 +chrX 1444766 . A . . END=1445632 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1502 +chrX 1445633 . T C, 419.04 . AS_QUALapprox=|429|0;AS_VarDP=23|40|0;BaseQRankSum=-3.915;DP=65;MQRankSum=0.000;QUALapprox=429;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;ReadPosRankSum=-1.007;VarDP=63 GT:AD:DP:GQ:PL:SB 1:23,40,0:63:99:429,0,1228:10,13,19,21 +chrX 1445634 . G . . END=1446138 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1800 +chrX 1446139 . G C, 199.04 . AS_QUALapprox=|209|0;AS_VarDP=32|36|0;BaseQRankSum=0.430;DP=69;MQRankSum=0.000;QUALapprox=209;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;ReadPosRankSum=0.634;VarDP=68 GT:AD:DP:GQ:PL:SB 1:32,36,0:68:99:209,0,1538:16,16,22,14 +chrX 1446140 . T . . END=1446161 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1800 +chrX 1446162 . G A, 413.04 . AS_QUALapprox=|423|0;AS_VarDP=27|38|0;BaseQRankSum=1.629;DP=67;MQRankSum=-0.812;QUALapprox=423;RAW_GT_COUNT=0,0,1;RAW_MQandDP=240625,67;ReadPosRankSum=-1.938;VarDP=65 GT:AD:DP:GQ:PL:SB 1:27,38,0:65:99:423,0,1617:14,13,29,9 +chrX 1446163 . T . . END=1446499 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1711 +chrX 1446500 . A AT, 271.01 . AS_QUALapprox=|281|0;AS_VarDP=13|27|0;BaseQRankSum=0.513;DP=60;MQRankSum=0.535;QUALapprox=281;RAW_GT_COUNT=0,0,1;RAW_MQandDP=213425,60;ReadPosRankSum=0.419;VarDP=40 GT:AD:DP:GQ:PL:SB 1:13,27,0:40:99:281,0,568:8,5,16,11 +chrX 1446501 . T . . END=1450798 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,418 +chrX 1450799 . A . . END=1450799 GT:DP:GQ:MIN_DP:PL 0:34:6:34:0,6 +chrX 1450800 . G . . END=1450817 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,958 +chrX 1450818 . C G, 663.04 . AS_QUALapprox=|673|0;AS_VarDP=4|19|0;BaseQRankSum=-0.921;DP=32;MQRankSum=0.000;QUALapprox=673;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;ReadPosRankSum=2.071;VarDP=23 GT:AD:DP:GQ:PL:SB 1:4,19,0:23:99:673,0,789:1,3,14,5 +chrX 1450819 . A . . END=1450827 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,1033 +chrX 1450828 . C G, 807.04 . AS_QUALapprox=|817|0;AS_VarDP=3|22|0;BaseQRankSum=2.711;DP=34;MQRankSum=0.000;QUALapprox=817;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;ReadPosRankSum=-0.076;VarDP=25 GT:AD:DP:GQ:PL:SB 1:3,22,0:25:99:817,0,898:1,2,17,5 +chrX 1450829 . G . . END=1451174 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,140 +chrX 1451175 . TAGGGGGTCCTGGGACACTCCTCCCTCCCCATCCCTA T, 866.01 . AS_QUALapprox=|876|0;AS_VarDP=0|23|0;DP=27;QUALapprox=876;RAW_GT_COUNT=0,0,1;RAW_MQandDP=95536,27;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:876,0,876:0,0,8,15 +chrX 1451212 . A . . END=1451682 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,790 +chrX 1451683 . C T, 1404.04 . AS_QUALapprox=|1414|0;AS_VarDP=1|45|0;BaseQRankSum=2.258;DP=46;MQRankSum=0.000;QUALapprox=1414;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165364,46;ReadPosRankSum=-1.658;VarDP=46 GT:AD:DP:GQ:PL:SB 1:1,45,0:46:99:1414,0,1423:1,0,20,25 +chrX 1451684 . G . . END=1451750 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1033 +chrX 1451751 . G A, 1479.04 . AS_QUALapprox=|1489|0;AS_VarDP=1|48|0;BaseQRankSum=2.090;DP=53;MQRankSum=2.894;QUALapprox=1489;RAW_GT_COUNT=0,0,1;RAW_MQandDP=175939,53;ReadPosRankSum=-0.531;VarDP=49 GT:AD:DP:GQ:PL:SB 1:1,48,0:49:99:1489,0,1498:1,0,20,28 +chrX 1451752 . T . . END=1453844 GT:DP:GQ:MIN_DP:PL 0:58:45:58:0,45 +chrX 1453845 . G . . END=1453872 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1453873 . A . . END=1454038 GT:DP:GQ:MIN_DP:PL 0:10:35:1:0,35 +chrX 1454039 . G T, 104.04 . AS_QUALapprox=|114|0;AS_VarDP=12|15|0;BaseQRankSum=0.797;DP=30;MQRankSum=0.000;QUALapprox=114;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;ReadPosRankSum=-0.317;VarDP=27 GT:AD:DP:GQ:PL:SB 1:12,15,0:27:99:114,0,501:9,3,10,5 +chrX 1454040 . C . . END=1454921 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,260 +chrX 1454922 . A G, 1922.04 . AS_QUALapprox=|1932|0;AS_VarDP=0|60|0;DP=62;QUALapprox=1932;RAW_GT_COUNT=0,0,1;RAW_MQandDP=222625,62;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:1932,0,1932:0,0,39,21 +chrX 1454923 . C . . END=1456047 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1699 +chrX 1456048 . A G, 2252.04 . AS_QUALapprox=|2262|0;AS_VarDP=1|72|0;BaseQRankSum=-0.561;DP=75;MQRankSum=0.000;QUALapprox=2262;RAW_GT_COUNT=0,0,1;RAW_MQandDP=270000,75;ReadPosRankSum=-1.163;VarDP=73 GT:AD:DP:GQ:PL:SB 1:1,72,0:73:99:2262,0,2297:1,0,43,29 +chrX 1456049 . T . . END=1456285 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1445 +chrX 1456286 . C CTT,CTTT, 967 . AS_QUALapprox=|960|977|0;AS_VarDP=0|12|15|0;DP=50;QUALapprox=977;RAW_GT_COUNT=0,0,1;RAW_MQandDP=178801,50;VarDP=27 GT:AD:DP:GQ:PL:SB 2:0,12,15,0:27:17:977,17,0,621:0,0,16,11 +chrX 1456287 . T . . END=1456391 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,1170 +chrX 1456392 . T C, 1572.04 . AS_QUALapprox=|1582|0;AS_VarDP=0|48|0;DP=49;QUALapprox=1582;RAW_GT_COUNT=0,0,1;RAW_MQandDP=174649,49;VarDP=48 GT:AD:DP:GQ:PL:SB 1:0,48,0:48:99:1582,0,1582:0,0,21,27 +chrX 1456393 . T . . END=1456688 GT:DP:GQ:MIN_DP:PL 0:66:54:66:0,54 +chrX 1456689 . C G, 2098.04 . AS_QUALapprox=|2108|0;AS_VarDP=0|68|0;DP=68;QUALapprox=2108;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237105,68;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,68,0:68:99:2108,0,2108:0,0,39,29 +chrX 1456690 . T . . END=1456768 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1733 +chrX 1456769 . G A, 1871.04 . AS_QUALapprox=|1881|0;AS_VarDP=0|58|0;DP=58;QUALapprox=1881;RAW_GT_COUNT=0,0,1;RAW_MQandDP=200709,58;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,58,0:58:99:1881,0,1881:0,0,22,36 +chrX 1456770 . C . . END=1458083 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1359 +chrX 1458084 . A G, 1848.04 . AS_QUALapprox=|1858|0;AS_VarDP=0|61|0;DP=65;QUALapprox=1858;RAW_GT_COUNT=0,0,1;RAW_MQandDP=228645,65;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,61,0:61:99:1858,0,1858:0,0,27,34 +chrX 1458085 . A . . END=1458188 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1647 +chrX 1458189 . A AATCT, 1937.01 . AS_QUALapprox=|1947|0;AS_VarDP=0|44|0;DP=50;QUALapprox=1947;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=44 GT:AD:DP:GQ:PL:SB 1:0,44,0:44:99:1947,0,1948:0,0,21,23 +chrX 1458190 . A . . END=1458525 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1221 +chrX 1458526 . T C, 1740.04 . AS_QUALapprox=|1750|0;AS_VarDP=0|58|0;DP=64;QUALapprox=1750;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,58,0:58:99:1750,0,1750:0,0,27,31 +chrX 1458527 . C . . END=1458579 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1686 +chrX 1458580 . CATCTATCT C,CATCT, 1046.01 . AS_QUALapprox=|548|1056|0;AS_VarDP=0|17|26|0;DP=61;QUALapprox=1056;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=43 GT:AD:DP:GQ:PL:SB 2:0,17,26,0:43:99:1056,508,0,1143:0,0,17,26 +chrX 1458589 . A . . END=1459325 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1507 +chrX 1459326 . CATCT C,CATCTATCT, 910.01 . AS_QUALapprox=|410|920|0;AS_VarDP=0|11|22|0;DP=52;QUALapprox=920;RAW_GT_COUNT=0,0,1;RAW_MQandDP=186625,52;VarDP=33 GT:AD:DP:GQ:PL:SB 2:0,11,22,0:33:99:920,510,0,959:0,0,11,22 +chrX 1459331 . A . . END=1459614 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,1381 +chrX 1459615 . C CATCT, 2593.01 . AS_QUALapprox=|2603|0;AS_VarDP=0|59|0;DP=62;QUALapprox=2603;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:2603,0,2604:0,0,29,30 +chrX 1459616 . A . . END=1460563 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1315 +chrX 1460564 . C CATCTATCT, 0.23 . AS_QUALapprox=|8|0;AS_VarDP=19|19|0;BaseQRankSum=-0.449;DP=52;MQRankSum=0.000;QUALapprox=8;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;ReadPosRankSum=0.453;VarDP=38 GT:AD:DP:GQ:PL:SB 1:19,19,0:38:8:8,0,855:10,9,10,9 +chrX 1460565 . A . . END=1460608 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,1541 +chrX 1460609 . T A, 1900.04 . AS_QUALapprox=|1910|0;AS_VarDP=0|52|0;DP=52;QUALapprox=1910;RAW_GT_COUNT=0,0,1;RAW_MQandDP=184259,52;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:1910,0,1910:0,0,29,23 +chrX 1460610 . C . . END=1460970 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1264 +chrX 1460971 . C T, 407.04 . AS_QUALapprox=|417|0;AS_VarDP=29|40|0;BaseQRankSum=1.284;DP=70;MQRankSum=0.000;QUALapprox=417;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;ReadPosRankSum=1.435;VarDP=69 GT:AD:DP:GQ:PL:SB 1:29,40,0:69:99:417,0,1349:17,12,21,19 +chrX 1460972 . G . . END=1461159 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1165 +chrX 1461160 . A AC, 580.01 . AS_QUALapprox=|590|0;AS_VarDP=0|26|0;DP=29;QUALapprox=590;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104049,29;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:590,0,590:0,0,16,10 +chrX 1461161 . C . . END=1461243 GT:DP:GQ:MIN_DP:PL 0:42:99:42:0,809 +chrX 1461244 . G A, 1988.04 . AS_QUALapprox=|1998|0;AS_VarDP=0|46|0;DP=46;QUALapprox=1998;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165025,46;VarDP=46 GT:AD:DP:GQ:PL:SB 1:0,46,0:46:99:1998,0,1998:0,0,24,22 +chrX 1461245 . G . . END=1461250 GT:DP:GQ:MIN_DP:PL 0:45:99:45:0,1410 +chrX 1461251 . C T, 1883.04 . AS_QUALapprox=|1893|0;AS_VarDP=0|43|0;DP=43;QUALapprox=1893;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154225,43;VarDP=43 GT:AD:DP:GQ:PL:SB 1:0,43,0:43:99:1893,0,1893:0,0,23,20 +chrX 1461252 . G . . END=1461665 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1369 +chrX 1461666 . A G, 2070.04 . AS_QUALapprox=|2080|0;AS_VarDP=0|63|0;DP=65;QUALapprox=2080;RAW_GT_COUNT=0,0,1;RAW_MQandDP=231954,65;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,63,0:63:99:2080,0,2080:0,0,24,39 +chrX 1461667 . C . . END=1461845 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,630 +chrX 1461846 . T . . END=1461848 GT:DP:GQ:MIN_DP:PL 0:58:0:58:0,0 +chrX 1461849 . C A, 2195.04 . AS_QUALapprox=|2205|0;AS_VarDP=0|49|0;DP=49;QUALapprox=2205;RAW_GT_COUNT=0,0,1;RAW_MQandDP=152294,49;VarDP=49 GT:AD:DP:GQ:PL:SB 1:0,49,0:49:99:2205,0,2205:0,0,26,23 +chrX 1461850 . T . . END=1461850 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,1643 +chrX 1461851 . C CTAATATA, 2465.01 . AS_QUALapprox=|2475|0;AS_VarDP=0|55|0;DP=55;QUALapprox=2475;RAW_GT_COUNT=0,0,1;RAW_MQandDP=171409,55;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:2475,0,2475:0,0,29,26 +chrX 1461852 . T . . END=1461853 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,1658 +chrX 1461854 . T TA, 2420.01 . AS_QUALapprox=|2430|0;AS_VarDP=0|54|0;DP=54;QUALapprox=2430;RAW_GT_COUNT=0,0,1;RAW_MQandDP=167809,54;VarDP=54 GT:AD:DP:GQ:PL:SB 1:0,54,0:54:99:2430,0,2430:0,0,29,25 +chrX 1461855 . C . . END=1461864 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,1580 +chrX 1461865 . A G, 2555.04 . AS_QUALapprox=|2565|0;AS_VarDP=0|57|0;DP=57;QUALapprox=2565;RAW_GT_COUNT=0,0,1;RAW_MQandDP=178258,57;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:2565,0,2565:0,0,32,25 +chrX 1461866 . A . . END=1461867 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,1485 +chrX 1461868 . A C,ATCATCTGTC, 1890.04 . AS_QUALapprox=|1900|1722|0;AS_VarDP=0|22|18|0;DP=60;QUALapprox=1900;RAW_GT_COUNT=0,0,1;RAW_MQandDP=189058,60;VarDP=40 GT:AD:DP:GQ:PL:SB 1:0,22,18,0:40:99:1900,0,178,1439:0,0,26,14 +chrX 1461869 . T . . END=1461871 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1777 +chrX 1461872 . CT C, 247.01 . AS_QUALapprox=|257|0;AS_VarDP=18|25|0;BaseQRankSum=1.620;DP=60;MQRankSum=1.519;QUALapprox=257;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187839,60;ReadPosRankSum=0.558;VarDP=43 GT:AD:DP:GQ:PL:SB 1:18,25,0:43:99:257,0,1057:10,8,18,7 +chrX 1461874 . A ATCTGT,AT, 1890.01 . AS_QUALapprox=|1900|1643|0;AS_VarDP=0|25|18|0;DP=60;QUALapprox=1900;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187839,60;VarDP=43 GT:AD:DP:GQ:PL:SB 1:0,25,18,0:43:99:1900,0,257,1478:0,0,28,15 +chrX 1461875 . C . . END=1461879 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1778 +chrX 1461880 . TG T, 2510.01 . AS_QUALapprox=|2520|0;AS_VarDP=0|56|0;DP=56;QUALapprox=2520;RAW_GT_COUNT=0,0,1;RAW_MQandDP=171520,56;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,56,0:56:99:2520,0,2520:0,0,35,21 +chrX 1461882 . A . . END=1461887 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1698 +chrX 1461888 . C CT, 2459.01 . AS_QUALapprox=|2469|0;AS_VarDP=0|55|0;DP=57;QUALapprox=2469;RAW_GT_COUNT=0,0,1;RAW_MQandDP=175356,57;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:2469,0,2469:0,0,34,21 +chrX 1461889 . A . . END=1461930 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1697 +chrX 1461931 . GATCT G, 2584.01 . AS_QUALapprox=|2594|0;AS_VarDP=0|58|0;DP=59;QUALapprox=2594;RAW_GT_COUNT=0,0,1;RAW_MQandDP=173008,59;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,58,0:58:99:2594,0,2594:0,0,38,20 +chrX 1461936 . A . . END=1461994 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,1080 +chrX 1461995 . A . . END=1461995 GT:DP:GQ:MIN_DP:PL 0:40:0:40:0,0 +chrX 1461996 . T . . END=1462002 GT:DP:GQ:MIN_DP:PL 0:40:99:40:0,405 +chrX 1462003 . A . . END=1462003 GT:DP:GQ:MIN_DP:PL 0:36:0:36:0,0 +chrX 1462004 . A . . END=1462004 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,675 +chrX 1462005 . T . . END=1462005 GT:DP:GQ:MIN_DP:PL 0:37:0:37:0,0 +chrX 1462006 . C . . END=1462011 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,738 +chrX 1462012 . ACTATCTACCTATCTATCTAATCTATCTACTATCTATCTATCTAATCTATCTACTATCTATCTAATCTATCTACTATCTATCTACTATCTAATCTATCCACTCTCTATCTACCTATCTAATCTATCTACTATCTATCTATCTAATCTATCTACTAT A, 626.01 . AS_QUALapprox=|636|0;AS_VarDP=0|17|0;DP=18;QUALapprox=636;RAW_GT_COUNT=0,0,1;RAW_MQandDP=50094,18;VarDP=17 GT:AD:DP:GQ:PL:SB 1:0,17,0:17:99:636,0,636:0,0,8,9 +chrX 1462168 . C . . END=1462175 GT:DP:GQ:MIN_DP:PL 0:81:99:81:0,1260 +chrX 1462176 . C . . END=1462179 GT:DP:GQ:MIN_DP:PL 0:86:0:86:0,0 +chrX 1462180 . C . . END=1462214 GT:DP:GQ:MIN_DP:PL 0:81:99:81:0,1800 +chrX 1462215 . A ACTAT, 1822.01 . AS_QUALapprox=|1832|0;AS_VarDP=1|42|0;BaseQRankSum=1.772;DP=57;MQRankSum=1.370;QUALapprox=1832;RAW_GT_COUNT=0,0,1;RAW_MQandDP=167268,57;ReadPosRankSum=0.206;VarDP=43 GT:AD:DP:GQ:PL:SB 1:1,42,0:43:99:1832,0,1890:1,0,24,18 +chrX 1462216 . C . . END=1462257 GT:DP:GQ:MIN_DP:PL 0:52:74:52:0,74 +chrX 1462258 . A ACTAT, 1170.01 . AS_QUALapprox=|2034|0;AS_VarDP=1|46|0;DP=51;QUALapprox=2034;RAW_GT_COUNT=0,0,1;RAW_MQandDP=146200,51;VarDP=47 GT:AD:DP:GQ:PL:SB 1:1,46,0:47:99:2034,0,1625:0,0,15,12 +chrX 1462259 . C . . END=1462262 GT:DP:GQ:MIN_DP:PL 0:46:70:46:0,70 +chrX 1462263 . C . . END=1462263 GT:DP:GQ:MIN_DP:PL 0:44:19:44:0,19 +chrX 1462264 . T . . END=1462264 GT:DP:GQ:MIN_DP:PL 0:43:35:43:0,35 +chrX 1462265 . A . . END=1462265 GT:DP:GQ:MIN_DP:PL 0:41:4:41:0,4 +chrX 1462266 . A . . END=1462269 GT:DP:GQ:MIN_DP:PL 0:42:29:42:0,29 +chrX 1462270 . A . . END=1462270 GT:DP:GQ:MIN_DP:PL 0:42:19:42:0,19 +chrX 1462271 . T . . END=1462271 GT:DP:GQ:MIN_DP:PL 0:41:25:41:0,25 +chrX 1462272 . C . . END=1462273 GT:DP:GQ:MIN_DP:PL 0:40:0:40:0,0 +chrX 1462274 . ACTAT A, 864.04 . AS_QUALapprox=|1719|0;AS_VarDP=1|39|0;DP=44;QUALapprox=1719;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126501,44;VarDP=40 GT:AD:DP:GQ:PL:SB 1:1,39,0:40:99:1719,0,1310:0,0,12,8 +chrX 1462279 . C . . END=1462301 GT:DP:GQ:MIN_DP:PL 0:39:0:39:0,0 +chrX 1462302 . A ACTAT, 764.01 . AS_QUALapprox=|1672|0;AS_VarDP=1|38|0;DP=41;QUALapprox=1672;RAW_GT_COUNT=0,0,1;RAW_MQandDP=121502,41;VarDP=39 GT:AD:DP:GQ:PL:SB 1:1,38,0:39:99:1672,0,1241:0,0,11,7 +chrX 1462303 . C . . END=1462340 GT:DP:GQ:MIN_DP:PL 0:41:99:41:0,1147 +chrX 1462341 . G A, 2240.04 . AS_QUALapprox=|2250|0;AS_VarDP=0|50|0;DP=51;QUALapprox=2250;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172600,51;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,50,0:50:99:2250,0,2250:0,0,18,32 +chrX 1462342 . T . . END=1462344 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,1548 +chrX 1462345 . GTCTA G, 2240.01 . AS_QUALapprox=|2250|0;AS_VarDP=0|50|0;DP=51;QUALapprox=2250;RAW_GT_COUNT=0,0,1;RAW_MQandDP=174664,51;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,50,0:50:99:2250,0,2250:0,0,18,32 +chrX 1462350 . T . . END=1462356 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,1170 +chrX 1462357 . G A, 2221.04 . AS_QUALapprox=|2231|0;AS_VarDP=0|50|0;DP=51;QUALapprox=2231;RAW_GT_COUNT=0,0,1;RAW_MQandDP=174664,51;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,50,0:50:99:2231,0,2231:0,0,16,34 +chrX 1462358 . T . . END=1462370 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,1215 +chrX 1462371 . C G, 2232.04 . AS_QUALapprox=|2242|0;AS_VarDP=1|51|0;BaseQRankSum=2.670;DP=55;MQRankSum=-0.165;QUALapprox=2242;RAW_GT_COUNT=0,0,1;RAW_MQandDP=191935,55;ReadPosRankSum=1.529;VarDP=52 GT:AD:DP:GQ:PL:SB 1:1,51,0:52:99:2242,0,2250:0,1,17,34 +chrX 1462372 . T . . END=1462597 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1751 +chrX 1462598 . GT G, 1482.01 . AS_QUALapprox=|1492|0;AS_VarDP=0|50|0;DP=55;QUALapprox=1492;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,50,0:50:99:1492,0,1492:0,0,26,24 +chrX 1462600 . T . . END=1462976 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1385 +chrX 1462977 . CA C,CAAA, 730.01 . AS_QUALapprox=|740|43|0;AS_VarDP=0|33|17|0;DP=60;QUALapprox=740;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,33,17,0:50:99:740,0,697,1095:0,0,25,25 +chrX 1462979 . A . . END=1464646 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,432 +chrX 1464647 . G C, 2063.04 . AS_QUALapprox=|2073|0;AS_VarDP=0|65|0;DP=67;QUALapprox=2073;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,65,0:65:99:2073,0,2073:0,0,27,38 +chrX 1464648 . G . . END=1464786 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1647 +chrX 1464787 . G GGT, 7.95 . AS_QUALapprox=|18|0;AS_VarDP=22|23|0;BaseQRankSum=-0.234;DP=52;MQRankSum=0.000;QUALapprox=18;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;ReadPosRankSum=-0.352;VarDP=45 GT:AD:DP:GQ:PL:SB 1:22,23,0:45:18:18,0,874:10,12,7,16 +chrX 1464788 . G . . END=1465032 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1434 +chrX 1465033 . G A, 226.04 . AS_QUALapprox=|236|0;AS_VarDP=25|30|0;BaseQRankSum=1.972;DP=58;MQRankSum=0.000;QUALapprox=236;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;ReadPosRankSum=0.533;VarDP=55 GT:AD:DP:GQ:PL:SB 1:25,30,0:55:99:236,0,1051:12,13,14,16 +chrX 1465034 . G . . END=1465085 GT:DP:GQ:MIN_DP:PL 0:45:99:45:0,1199 +chrX 1465086 . C T, 30.04 . AS_QUALapprox=|40|0;AS_VarDP=19|19|0;BaseQRankSum=0.562;DP=39;MQRankSum=0.000;QUALapprox=40;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140400,39;ReadPosRankSum=1.066;VarDP=38 GT:AD:DP:GQ:PL:SB 1:19,19,0:38:40:40,0,615:10,9,10,9 +chrX 1465087 . C . . END=1466606 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1002 +chrX 1466607 . T C, 1964.04 . AS_QUALapprox=|1974|0;AS_VarDP=0|62|0;DP=65;QUALapprox=1974;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:1974,0,1974:0,0,32,30 +chrX 1466608 . A . . END=1466863 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1240 +chrX 1466864 . CTCCT C, 1186.01 . AS_QUALapprox=|1196|0;AS_VarDP=4|32|0;BaseQRankSum=-1.348;DP=57;MQRankSum=0.000;QUALapprox=1196;RAW_GT_COUNT=0,0,1;RAW_MQandDP=203121,57;ReadPosRankSum=-0.277;VarDP=36 GT:AD:DP:GQ:PL:SB 1:4,32,0:36:99:1196,0,1309:4,0,10,22 +chrX 1466869 . T . . END=1466967 GT:DP:GQ:MIN_DP:PL 0:40:34:39:0,34 +chrX 1466968 . C G, 112.04 . AS_QUALapprox=|122|0;AS_VarDP=21|24|0;BaseQRankSum=0.197;DP=45;MQRankSum=0.000;QUALapprox=122;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162000,45;ReadPosRankSum=-0.458;VarDP=45 GT:AD:DP:GQ:PL:SB 1:21,24,0:45:99:122,0,1067:4,17,8,16 +chrX 1466969 . T . . END=1467035 GT:DP:GQ:MIN_DP:PL 0:53:34:50:0,34 +chrX 1467036 . G GACTC, 215.01 . AS_QUALapprox=|225|0;AS_VarDP=23|28|0;BaseQRankSum=-0.253;DP=52;MQRankSum=0.000;QUALapprox=225;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;ReadPosRankSum=-0.019;VarDP=51 GT:AD:DP:GQ:PL:SB 1:23,28,0:51:99:225,0,1260:10,13,13,15 +chrX 1467037 . A . . END=1467050 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1663 +chrX 1467051 . G T, 215.04 . AS_QUALapprox=|225|0;AS_VarDP=26|31|0;BaseQRankSum=1.589;DP=57;MQRankSum=0.000;QUALapprox=225;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;ReadPosRankSum=-1.163;VarDP=57 GT:AD:DP:GQ:PL:SB 1:26,31,0:57:99:225,0,1385:12,14,16,15 +chrX 1467052 . T . . END=1467055 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1800 +chrX 1467056 . C T, 100.04 . AS_QUALapprox=|110|0;AS_VarDP=28|30|0;BaseQRankSum=1.821;DP=58;MQRankSum=0.000;QUALapprox=110;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;ReadPosRankSum=-0.689;VarDP=58 GT:AD:DP:GQ:PL:SB 1:28,30,0:58:99:110,0,1340:12,16,15,15 +chrX 1467057 . G . . END=1467407 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1691 +chrX 1467408 . G A, 2223.04 . AS_QUALapprox=|2233|0;AS_VarDP=0|66|0;DP=71;QUALapprox=2233;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;VarDP=66 GT:AD:DP:GQ:PL:SB 1:0,66,0:66:99:2233,0,2233:0,0,38,28 +chrX 1467409 . T . . END=1467532 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1800 +chrX 1467533 . G C, 109.04 . AS_QUALapprox=|119|0;AS_VarDP=34|36|0;BaseQRankSum=2.109;DP=72;MQRankSum=0.000;QUALapprox=119;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;ReadPosRankSum=-0.905;VarDP=70 GT:AD:DP:GQ:PL:SB 1:34,36,0:70:99:119,0,1170:18,16,16,20 +chrX 1467534 . T . . END=1468318 GT:DP:GQ:MIN_DP:PL 0:72:71:72:0,71 +chrX 1468319 . G A, 1950.04 . AS_QUALapprox=|1960|0;AS_VarDP=0|58|0;DP=58;QUALapprox=1960;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,58,0:58:99:1960,0,1960:0,0,32,26 +chrX 1468320 . T . . END=1468758 GT:DP:GQ:MIN_DP:PL 0:38:30:30:0,30 +chrX 1468759 . C T, 309.04 . AS_QUALapprox=|319|0;AS_VarDP=0|8|0;DP=10;QUALapprox=319;RAW_GT_COUNT=0,0,1;RAW_MQandDP=36000,10;VarDP=8 GT:AD:DP:GQ:PL:SB 1:0,8,0:8:99:319,0,319:0,0,2,6 +chrX 1468760 . C . . END=1468777 GT:DP:GQ:MIN_DP:PL 0:7:90:7:0,90 +chrX 1468778 . T TC, 170.01 . AS_QUALapprox=|180|0;AS_VarDP=0|4|0;DP=5;QUALapprox=180;RAW_GT_COUNT=0,0,1;RAW_MQandDP=18000,5;VarDP=4 GT:AD:DP:GQ:PL:SB 1:0,4,0:4:99:180,0,180:0,0,0,4 +chrX 1468779 . C . . END=1468785 GT:DP:GQ:MIN_DP:PL 0:4:0:4:0,0 +chrX 1468786 . C T, 125.04 . AS_QUALapprox=|135|0;AS_VarDP=0|3|0;DP=3;QUALapprox=135;RAW_GT_COUNT=0,0,1;RAW_MQandDP=10800,3;VarDP=3 GT:AD:DP:GQ:PL:SB 1:0,3,0:3:99:135,0,135:0,0,0,3 +chrX 1468787 . C . . END=1468804 GT:DP:GQ:MIN_DP:PL 0:5:45:5:0,45 +chrX 1468805 . C . . END=1468833 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1468834 . C . . END=1468836 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 1468837 . T . . END=1468837 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 1468838 . C . . END=1468838 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 1468839 . A . . END=1468839 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1468840 . C . . END=1468842 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 1468843 . C . . END=1468844 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1468845 . C . . END=1468846 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 1468847 . C . . END=1468847 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 1468848 . C . . END=1468848 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 1468849 . T . . END=1468850 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 1468851 . C . . END=1468852 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 1468853 . C . . END=1468853 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 1468854 . T . . END=1468866 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1468867 . C . . END=1468868 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 1468869 . C . . END=1468906 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1468907 . T . . END=1468908 GT:DP:GQ:MIN_DP:PL 0:3:0:3:0,0 +chrX 1468909 . C . . END=1468919 GT:DP:GQ:MIN_DP:PL 0:3:20:3:0,20 +chrX 1468920 . C . . END=1468921 GT:DP:GQ:MIN_DP:PL 0:3:4:3:0,4 +chrX 1468922 . C . . END=1468925 GT:DP:GQ:MIN_DP:PL 0:3:25:3:0,25 +chrX 1468926 . T . . END=1468927 GT:DP:GQ:MIN_DP:PL 0:3:0:3:0,0 +chrX 1468928 . C . . END=1468928 GT:DP:GQ:MIN_DP:PL 0:3:94:3:0,94 +chrX 1468929 . C . . END=1468929 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 1468930 . C . . END=1468931 GT:DP:GQ:MIN_DP:PL 0:3:84:3:0,84 +chrX 1468932 . T . . END=1468932 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 1468933 . C . . END=1468939 GT:DP:GQ:MIN_DP:PL 0:3:35:2:0,35 +chrX 1468940 . T . . END=1468940 GT:DP:GQ:MIN_DP:PL 0:4:10:4:0,10 +chrX 1468941 . C . . END=1468986 GT:DP:GQ:MIN_DP:PL 0:4:35:4:0,35 +chrX 1468987 . T . . END=1468987 GT:DP:GQ:MIN_DP:PL 0:4:0:4:0,0 +chrX 1468988 . C . . END=1469073 GT:DP:GQ:MIN_DP:PL 0:10:99:10:0,119 +chrX 1469074 . CCCTTCCCTCTCTCCTCT C, 36.01 . AS_QUALapprox=|46|0;AS_VarDP=4|5|0;BaseQRankSum=-0.589;DP=22;MQRankSum=0.000;QUALapprox=46;RAW_GT_COUNT=0,0,1;RAW_MQandDP=72024,22;ReadPosRankSum=0.936;VarDP=9 GT:AD:DP:GQ:PL:SB 1:4,5,0:9:46:46,0,226:4,0,2,3 +chrX 1469092 . C . . END=1469780 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,600 +chrX 1469781 . C A, 0.04 . AS_QUALapprox=|5|0;AS_VarDP=26|26|0;BaseQRankSum=-0.279;DP=54;MQRankSum=0.000;QUALapprox=5;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;ReadPosRankSum=1.785;VarDP=52 GT:AD:DP:GQ:PL:SB 1:26,26,0:52:5:5,0,854:18,8,10,16 +chrX 1469782 . C . . END=1471308 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1030 +chrX 1471309 . A ATT,ATTT, 637.01 . AS_QUALapprox=|592|647|0;AS_VarDP=0|8|13|0;DP=51;QUALapprox=647;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172389,51;VarDP=21 GT:AD:DP:GQ:PL:SB 2:0,8,13,0:21:55:647,55,0,434:0,0,7,14 +chrX 1471310 . T . . END=1471553 GT:DP:GQ:MIN_DP:PL 0:45:99:45:0,403 +chrX 1471554 . G A, 348.04 . AS_QUALapprox=|358|0;AS_VarDP=21|31|0;BaseQRankSum=1.076;DP=56;MQRankSum=-2.102;QUALapprox=358;RAW_GT_COUNT=0,0,1;RAW_MQandDP=195546,56;ReadPosRankSum=1.287;VarDP=52 GT:AD:DP:GQ:PL:SB 1:21,31,0:52:99:358,0,1012:9,12,15,16 +chrX 1471555 . C . . END=1472980 GT:DP:GQ:MIN_DP:PL 0:52:45:52:0,45 +chrX 1472981 . T C, 85.04 . AS_QUALapprox=|95|0;AS_VarDP=8|11|0;BaseQRankSum=0.310;DP=24;MQRankSum=-0.746;QUALapprox=95;RAW_GT_COUNT=0,0,1;RAW_MQandDP=83365,24;ReadPosRankSum=-1.405;VarDP=19 GT:AD:DP:GQ:PL:SB 1:8,11,0:19:95:95,0,372:7,1,9,2 +chrX 1472982 . G . . END=1473595 GT:DP:GQ:MIN_DP:PL 0:40:99:40:0,352 +chrX 1473596 . G GTGGATTGATGGATCAGTGTTTAGATAGGTGGATGTGTGGGTGGATGAATGGA, 266.01 . AS_QUALapprox=|276|0;AS_VarDP=14|23|0;BaseQRankSum=-1.058;DP=57;MQRankSum=-3.036;QUALapprox=276;RAW_GT_COUNT=0,0,1;RAW_MQandDP=179304,57;ReadPosRankSum=-1.247;VarDP=37 GT:AD:DP:GQ:PL:SB 1:14,23,0:37:99:276,0,880:10,4,14,9 +chrX 1473597 . T . . END=1476511 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,516 +chrX 1476512 . C G, 1551.04 . AS_QUALapprox=|1561|0;AS_VarDP=0|52|0;DP=55;QUALapprox=1561;RAW_GT_COUNT=0,0,1;RAW_MQandDP=195121,55;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:1561,0,1561:0,0,28,24 +chrX 1476513 . G . . END=1478547 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,436 +chrX 1478548 . G A, 15.04 . AS_QUALapprox=|25|0;AS_VarDP=32|32|0;BaseQRankSum=0.354;DP=65;MQRankSum=0.000;QUALapprox=25;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;ReadPosRankSum=-1.740;VarDP=64 GT:AD:DP:GQ:PL:SB 1:32,32,0:64:25:25,0,1012:20,12,16,16 +chrX 1478549 . G . . END=1480392 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1629 +chrX 1480393 . G GT, 64.01 . AS_QUALapprox=|74|0;AS_VarDP=24|27|0;BaseQRankSum=-0.598;DP=58;MQRankSum=-0.904;QUALapprox=74;RAW_GT_COUNT=0,0,1;RAW_MQandDP=206800,58;ReadPosRankSum=-0.085;VarDP=51 GT:AD:DP:GQ:PL:SB 1:24,27,0:51:74:74,0,702:11,13,16,11 +chrX 1480394 . T . . END=1480751 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1413 +chrX 1480752 . C A, 227.04 . AS_QUALapprox=|237|0;AS_VarDP=27|34|0;BaseQRankSum=0.697;DP=63;MQRankSum=0.000;QUALapprox=237;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;ReadPosRankSum=-0.356;VarDP=61 GT:AD:DP:GQ:PL:SB 1:27,34,0:61:99:237,0,1115:8,19,13,21 +chrX 1480753 . T . . END=1480915 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1800 +chrX 1480916 . A C, 68.04 . AS_QUALapprox=|78|0;AS_VarDP=28|30|0;BaseQRankSum=-0.308;DP=59;MQRankSum=0.000;QUALapprox=78;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;ReadPosRankSum=-0.817;VarDP=58 GT:AD:DP:GQ:PL:SB 1:28,30,0:58:78:78,0,1338:20,8,17,13 +chrX 1480917 . A C, 68.04 . AS_QUALapprox=|78|0;AS_VarDP=28|30|0;BaseQRankSum=-0.814;DP=58;MQRankSum=0.000;QUALapprox=78;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;ReadPosRankSum=-0.833;VarDP=58 GT:AD:DP:GQ:PL:SB 1:28,30,0:58:78:78,0,1338:20,8,17,13 +chrX 1480918 . C . . END=1480941 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1704 +chrX 1480942 . G A, 166.04 . AS_QUALapprox=|176|0;AS_VarDP=28|35|0;BaseQRankSum=0.951;DP=63;MQRankSum=0.000;QUALapprox=176;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;ReadPosRankSum=-2.144;VarDP=63 GT:AD:DP:GQ:PL:SB 1:28,35,0:63:99:176,0,1426:19,9,21,14 +chrX 1480943 . A . . END=1482159 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1178 +chrX 1482160 . GGT G, 4.04 . AS_QUALapprox=|14|0;AS_VarDP=17|17|0;BaseQRankSum=1.064;DP=41;MQRankSum=-0.941;QUALapprox=14;RAW_GT_COUNT=0,0,1;RAW_MQandDP=145600,41;ReadPosRankSum=0.603;VarDP=34 GT:AD:DP:GQ:PL:SB 1:17,17,0:34:14:14,0,566:8,9,10,7 +chrX 1482163 . G . . END=1482696 GT:DP:GQ:MIN_DP:PL 0:29:51:27:0,51 +chrX 1482697 . TAG T, 3246.01 . AS_QUALapprox=|3256|0;AS_VarDP=0|73|0;DP=74;QUALapprox=3256;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,73,0:73:99:3256,0,3256:0,0,36,37 +chrX 1482700 . T TAC, 3246.01 . AS_QUALapprox=|3256|0;AS_VarDP=0|73|0;DP=74;QUALapprox=3256;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,73,0:73:99:3256,0,3256:0,0,36,37 +chrX 1482701 . C . . END=1482809 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1430 +chrX 1482810 . C G, 1582.04 . AS_QUALapprox=|1592|0;AS_VarDP=0|47|0;DP=50;QUALapprox=1592;RAW_GT_COUNT=0,0,1;RAW_MQandDP=116210,50;VarDP=47 GT:AD:DP:GQ:PL:SB 1:0,47,0:47:99:1592,0,1592:0,0,22,25 +chrX 1482811 . G . . END=1482858 GT:DP:GQ:MIN_DP:PL 0:45:99:45:0,1371 +chrX 1482859 . T C, 1407.04 . AS_QUALapprox=|1417|0;AS_VarDP=0|45|0;DP=45;QUALapprox=1417;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97133,45;VarDP=45 GT:AD:DP:GQ:PL:SB 1:0,45,0:45:99:1417,0,1417:0,0,24,21 +chrX 1482860 . G . . END=1482990 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,1142 +chrX 1482991 . C T, 2508.04 . AS_QUALapprox=|2518|0;AS_VarDP=0|57|0;DP=57;QUALapprox=2518;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154446,57;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:2518,0,2518:0,0,27,30 +chrX 1482992 . T . . END=1482995 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1800 +chrX 1482996 . T C, 2499.04 . AS_QUALapprox=|2509|0;AS_VarDP=0|57|0;DP=58;QUALapprox=2509;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158730,58;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:2509,0,2509:0,0,27,30 +chrX 1482997 . G . . END=1483087 GT:DP:GQ:MIN_DP:PL 0:73:99:73:0,1800 +chrX 1483088 . G A, 2334.04 . AS_QUALapprox=|2344|0;AS_VarDP=0|72|0;DP=75;QUALapprox=2344;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252534,75;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,72,0:72:99:2344,0,2344:0,0,44,28 +chrX 1483089 . A . . END=1484073 GT:DP:GQ:MIN_DP:PL 0:61:65:61:0,65 +chrX 1484074 . T C, 25.04 . AS_QUALapprox=|35|0;AS_VarDP=26|26|0;BaseQRankSum=0.734;DP=54;MQRankSum=0.000;QUALapprox=35;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;ReadPosRankSum=-0.385;VarDP=52 GT:AD:DP:GQ:PL:SB 1:26,26,0:52:35:35,0,848:10,16,20,6 +chrX 1484075 . A . . END=1484491 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1684 +chrX 1484492 . T . . END=1484492 GT:DP:GQ:MIN_DP:PL 0:77:0:77:0,0 +chrX 1484493 . G . . END=1484497 GT:DP:GQ:MIN_DP:PL 0:76:99:76:0,1800 +chrX 1484498 . G . . END=1484498 GT:DP:GQ:MIN_DP:PL 0:76:0:76:0,0 +chrX 1484499 . G . . END=1484668 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1493 +chrX 1484669 . A T, 104.04 . AS_QUALapprox=|114|0;AS_VarDP=19|22|0;BaseQRankSum=1.125;DP=42;MQRankSum=1.125;QUALapprox=114;RAW_GT_COUNT=0,0,1;RAW_MQandDP=149904,42;ReadPosRankSum=-0.301;VarDP=41 GT:AD:DP:GQ:PL:SB 1:19,22,0:41:99:114,0,765:11,8,10,12 +chrX 1484670 . G . . END=1484723 GT:DP:GQ:MIN_DP:PL 0:39:99:39:0,765 +chrX 1484724 . T TAAAAA, 534.01 . AS_QUALapprox=|544|0;AS_VarDP=2|16|0;BaseQRankSum=-0.385;DP=48;MQRankSum=-0.541;QUALapprox=544;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151782,48;ReadPosRankSum=1.078;VarDP=18 GT:AD:DP:GQ:PL:SB 1:2,16,0:18:99:544,0,635:1,1,7,9 +chrX 1484725 . A . . END=1484985 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,252 +chrX 1484986 . CT C, 280.01 . AS_QUALapprox=|290|0;AS_VarDP=2|16|0;BaseQRankSum=-0.182;DP=55;MQRankSum=-0.177;QUALapprox=290;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194740,55;ReadPosRankSum=-0.205;VarDP=18 GT:AD:DP:GQ:PL:SB 1:2,16,0:18:99:290,0,314:0,2,8,8 +chrX 1484988 . T . . END=1485232 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1096 +chrX 1485233 . C G, 1925.04 . AS_QUALapprox=|1935|0;AS_VarDP=1|59|0;BaseQRankSum=2.587;DP=60;MQRankSum=0.000;QUALapprox=1935;RAW_GT_COUNT=0,0,1;RAW_MQandDP=215316,60;ReadPosRankSum=0.924;VarDP=60 GT:AD:DP:GQ:PL:SB 1:1,59,0:60:99:1935,0,1945:0,1,40,19 +chrX 1485234 . T . . END=1485286 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1677 +chrX 1485287 . A G, 1667.04 . AS_QUALapprox=|1677|0;AS_VarDP=1|53|0;BaseQRankSum=2.137;DP=55;MQRankSum=0.000;QUALapprox=1677;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;ReadPosRankSum=0.193;VarDP=54 GT:AD:DP:GQ:PL:SB 1:1,53,0:54:99:1677,0,1687:1,0,30,23 +chrX 1485288 . C . . END=1485925 GT:DP:GQ:MIN_DP:PL 0:84:99:84:0,1726 +chrX 1485926 . G A, 2568.04 . AS_QUALapprox=|2578|0;AS_VarDP=0|80|0;DP=82;QUALapprox=2578;RAW_GT_COUNT=0,0,1;RAW_MQandDP=295200,82;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,80,0:80:99:2578,0,2578:0,0,41,39 +chrX 1485927 . T . . END=1485980 GT:DP:GQ:MIN_DP:PL 0:81:99:81:0,1800 +chrX 1485981 . A G, 2664.04 . AS_QUALapprox=|2674|0;AS_VarDP=0|81|0;DP=85;QUALapprox=2674;RAW_GT_COUNT=0,0,1;RAW_MQandDP=306000,85;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,81,0:81:99:2674,0,2674:0,0,39,42 +chrX 1485982 . G . . END=1486574 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,336 +chrX 1486575 . G C, 371.04 . AS_QUALapprox=|381|0;AS_VarDP=26|37|0;BaseQRankSum=-0.011;DP=64;MQRankSum=0.000;QUALapprox=381;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;ReadPosRankSum=0.035;VarDP=63 GT:AD:DP:GQ:PL:SB 1:26,37,0:63:99:381,0,1226:10,16,17,20 +chrX 1486576 . A . . END=1486917 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1652 +chrX 1486918 . G A, 467.04 . AS_QUALapprox=|477|0;AS_VarDP=28|41|0;BaseQRankSum=2.037;DP=73;MQRankSum=0.000;QUALapprox=477;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;ReadPosRankSum=-0.159;VarDP=69 GT:AD:DP:GQ:PL:SB 1:28,41,0:69:99:477,0,1390:17,11,22,19 +chrX 1486919 . G . . END=1487117 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1800 +chrX 1487118 . C G, 2252.04 . AS_QUALapprox=|2262|0;AS_VarDP=0|68|0;DP=71;QUALapprox=2262;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,68,0:68:99:2262,0,2262:0,0,27,41 +chrX 1487119 . T . . END=1487349 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1800 +chrX 1487350 . G A, 210.04 . AS_QUALapprox=|220|0;AS_VarDP=34|39|0;BaseQRankSum=1.186;DP=77;MQRankSum=0.000;QUALapprox=220;RAW_GT_COUNT=0,0,1;RAW_MQandDP=277200,77;ReadPosRankSum=0.813;VarDP=73 GT:AD:DP:GQ:PL:SB 1:34,39,0:73:99:220,0,1260:17,17,29,10 +chrX 1487351 . T . . END=1488256 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,323 +chrX 1488257 . C T, 1850.04 . AS_QUALapprox=|1860|0;AS_VarDP=0|55|0;DP=57;QUALapprox=1860;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:1860,0,1860:0,0,25,30 +chrX 1488258 . C . . END=1488818 GT:DP:GQ:MIN_DP:PL 0:62:24:56:0,24 +chrX 1488819 . ACACT A, 316.01 . AS_QUALapprox=|326|0;AS_VarDP=28|35|0;BaseQRankSum=0.523;DP=65;MQRankSum=0.000;QUALapprox=326;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;ReadPosRankSum=0.605;VarDP=63 GT:AD:DP:GQ:PL:SB 1:28,35,0:63:99:326,0,1565:16,12,18,17 +chrX 1488824 . C . . END=1488877 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1800 +chrX 1488878 . T C, 1995.04 . AS_QUALapprox=|2005|0;AS_VarDP=0|60|0;DP=62;QUALapprox=2005;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:2005,0,2005:0,0,32,28 +chrX 1488879 . A . . END=1489092 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1418 +chrX 1489093 . C T, 18.04 . AS_QUALapprox=|28|0;AS_VarDP=21|23|0;BaseQRankSum=-0.370;DP=46;MQRankSum=0.000;QUALapprox=28;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;ReadPosRankSum=-1.257;VarDP=44 GT:AD:DP:GQ:PL:SB 1:21,23,0:44:28:28,0,728:9,12,10,13 +chrX 1489094 . A . . END=1489435 GT:DP:GQ:MIN_DP:PL 0:48:31:43:0,31 +chrX 1489436 . G T, 102.04 . AS_QUALapprox=|112|0;AS_VarDP=30|34|0;BaseQRankSum=-0.090;DP=110;MQRankSum=-0.607;QUALapprox=112;RAW_GT_COUNT=0,0,1;RAW_MQandDP=383983,110;ReadPosRankSum=-1.019;VarDP=64 GT:AD:DP:GQ:PL:SB 1:30,34,0:64:99:112,0,1476:15,13,20,14 +chrX 1489437 . A . . END=1489910 GT:DP:GQ:MIN_DP:PL 0:20:35:1:0,35 +chrX 1489911 . A . . END=1489956 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1489957 . A . . END=1491982 GT:DP:GQ:MIN_DP:PL 0:2:35:1:0,35 +chrX 1491983 . C T, 432.04 . AS_QUALapprox=|442|0;AS_VarDP=36|50|0;BaseQRankSum=-0.018;DP=87;MQRankSum=0.000;QUALapprox=442;RAW_GT_COUNT=0,0,1;RAW_MQandDP=313200,87;ReadPosRankSum=-0.280;VarDP=86 GT:AD:DP:GQ:PL:SB 1:36,50,0:86:99:442,0,1613:16,20,25,25 +chrX 1491984 . C . . END=1492359 GT:DP:GQ:MIN_DP:PL 0:84:99:84:0,1800 +chrX 1492360 . A G, 2346.04 . AS_QUALapprox=|2356|0;AS_VarDP=0|74|0;DP=75;QUALapprox=2356;RAW_GT_COUNT=0,0,1;RAW_MQandDP=270000,75;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,74,0:74:99:2356,0,2356:0,0,35,39 +chrX 1492361 . A . . END=1493160 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,170 +chrX 1493161 . G A, 30.04 . AS_QUALapprox=|40|0;AS_VarDP=22|23|0;BaseQRankSum=-0.473;DP=59;MQRankSum=0.000;QUALapprox=40;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;ReadPosRankSum=-1.079;VarDP=45 GT:AD:DP:GQ:PL:SB 1:22,23,0:45:40:40,0,779:7,15,10,13 +chrX 1493162 . C . . END=1493336 GT:DP:GQ:MIN_DP:PL 0:46:99:46:0,135 +chrX 1493337 . AGGGG A, 752.01 . AS_QUALapprox=|762|0;AS_VarDP=0|20|0;DP=26;QUALapprox=762;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90625,26;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:762,0,762:0,0,18,2 +chrX 1493342 . AG A, 752.01 . AS_QUALapprox=|762|0;AS_VarDP=0|20|0;DP=23;QUALapprox=762;RAW_GT_COUNT=0,0,1;RAW_MQandDP=79825,23;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:762,0,762:0,0,18,2 +chrX 1493344 . G . . END=1493421 GT:DP:GQ:MIN_DP:PL 0:21:47:20:0,47 +chrX 1493422 . A *,AAAG, 67.01 . AS_QUALapprox=|0|484|0;AS_VarDP=0|10|11|0;DP=21;QUALapprox=484;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75600,21;VarDP=21 GT:AD:DP:GQ:PL:SB 2:0,10,11,0:21:47:484,47,0,490:0,0,20,1 +chrX 1493423 . A . . END=1493424 GT:DP:GQ:MIN_DP:PL 0:20:99:20:0,600 +chrX 1493425 . G GGAGGA, 116.01 . AS_QUALapprox=|126|0;AS_VarDP=11|14|0;BaseQRankSum=0.126;DP=25;MQRankSum=-0.806;QUALapprox=126;RAW_GT_COUNT=0,0,1;RAW_MQandDP=89764,25;ReadPosRankSum=1.073;VarDP=25 GT:AD:DP:GQ:PL:SB 1:11,14,0:25:99:126,0,619:9,2,12,2 +chrX 1493426 . A . . END=1493431 GT:DP:GQ:MIN_DP:PL 0:23:23:23:0,23 +chrX 1493432 . G . . END=1493433 GT:DP:GQ:MIN_DP:PL 0:22:5:22:0,5 +chrX 1493434 . G . . END=1493438 GT:DP:GQ:MIN_DP:PL 0:23:24:22:0,24 +chrX 1493439 . G . . END=1493439 GT:DP:GQ:MIN_DP:PL 0:22:0:22:0,0 +chrX 1493440 . G . . END=1493444 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,99 +chrX 1493445 . G A, 277.04 . AS_QUALapprox=|287|0;AS_VarDP=10|17|0;BaseQRankSum=-1.072;DP=28;MQRankSum=-1.050;QUALapprox=287;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100445,28;ReadPosRankSum=1.416;VarDP=27 GT:AD:DP:GQ:PL:SB 1:10,17,0:27:99:287,0,737:8,2,13,4 +chrX 1493446 . G . . END=1493446 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,829 +chrX 1493447 . A G, 267.04 . AS_QUALapprox=|277|0;AS_VarDP=11|17|0;BaseQRankSum=-0.035;DP=30;MQRankSum=-1.106;QUALapprox=277;RAW_GT_COUNT=0,0,1;RAW_MQandDP=107645,30;ReadPosRankSum=0.829;VarDP=28 GT:AD:DP:GQ:PL:SB 1:11,17,0:28:99:277,0,737:8,3,13,4 +chrX 1493448 . A . . END=1493460 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,764 +chrX 1493461 . G A, 1367.04 . AS_QUALapprox=|1377|0;AS_VarDP=1|34|0;BaseQRankSum=1.858;DP=38;MQRankSum=-0.123;QUALapprox=1377;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136445,38;ReadPosRankSum=0.050;VarDP=35 GT:AD:DP:GQ:PL:SB 1:1,34,0:35:99:1377,0,1386:0,1,21,13 +chrX 1493462 . A . . END=1493547 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1121 +chrX 1493548 . G . . END=1493548 GT:DP:GQ:MIN_DP:PL 0:65:16:65:0,16 +chrX 1493549 . A . . END=1493796 GT:DP:GQ:MIN_DP:PL 0:73:99:73:0,1800 +chrX 1493797 . T C, 2199.04 . AS_QUALapprox=|2209|0;AS_VarDP=2|69|0;BaseQRankSum=1.408;DP=71;MQRankSum=0.000;QUALapprox=2209;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;ReadPosRankSum=0.261;VarDP=71 GT:AD:DP:GQ:PL:SB 1:2,69,0:71:99:2209,0,2253:0,2,35,34 +chrX 1493798 . T . . END=1494305 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,448 +chrX 1494306 . C T, 3130.04 . AS_QUALapprox=|3140|0;AS_VarDP=0|70|0;DP=73;QUALapprox=3140;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,70,0:70:99:3140,0,3140:0,0,36,34 +chrX 1494307 . A . . END=1494309 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1800 +chrX 1494310 . T C, 3228.04 . AS_QUALapprox=|3238|0;AS_VarDP=0|73|0;DP=75;QUALapprox=3238;RAW_GT_COUNT=0,0,1;RAW_MQandDP=270000,75;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,73,0:73:99:3238,0,3238:0,0,38,35 +chrX 1494311 . T . . END=1494527 GT:DP:GQ:MIN_DP:PL 0:74:99:74:0,1800 +chrX 1494528 . A T, 2444.04 . AS_QUALapprox=|2454|0;AS_VarDP=0|64|0;DP=65;QUALapprox=2454;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,64,0:64:99:2454,0,2454:0,0,34,30 +chrX 1494529 . G . . END=1494868 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,110 +chrX 1494869 . ATTT A,ATT, 538.01 . AS_QUALapprox=|437|548|0;AS_VarDP=0|20|22|0;DP=46;QUALapprox=548;RAW_GT_COUNT=0,0,1;RAW_MQandDP=163600,46;VarDP=42 GT:AD:DP:GQ:PL:SB 2:0,20,22,0:42:99:548,111,0,780:0,0,12,30 +chrX 1494873 . T . . END=1494969 GT:DP:GQ:MIN_DP:PL 0:52:84:52:0,84 +chrX 1494970 . G A, 19.04 . AS_QUALapprox=|29|0;AS_VarDP=33|34|0;BaseQRankSum=2.637;DP=68;MQRankSum=0.000;QUALapprox=29;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;ReadPosRankSum=-0.103;VarDP=67 GT:AD:DP:GQ:PL:SB 1:33,34,0:67:29:29,0,1499:13,20,16,18 +chrX 1494971 . G . . END=1494983 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1800 +chrX 1494984 . CT C, 145.01 . AS_QUALapprox=|155|0;AS_VarDP=34|38|0;BaseQRankSum=-0.411;DP=73;MQRankSum=0.000;QUALapprox=155;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;ReadPosRankSum=-0.559;VarDP=72 GT:AD:DP:GQ:PL:SB 1:34,38,0:72:99:155,0,1671:14,20,19,19 +chrX 1494986 . G . . END=1495354 GT:DP:GQ:MIN_DP:PL 0:78:99:78:0,1800 +chrX 1495355 . G A, 104.04 . AS_QUALapprox=|114|0;AS_VarDP=36|37|0;BaseQRankSum=1.857;DP=76;MQRankSum=0.000;QUALapprox=114;RAW_GT_COUNT=0,0,1;RAW_MQandDP=273600,76;ReadPosRankSum=-0.177;VarDP=73 GT:AD:DP:GQ:PL:SB 1:36,37,0:73:99:114,0,1265:18,18,15,22 +chrX 1495356 . T . . END=1495460 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1800 +chrX 1495461 . A C, 2652.04 . AS_QUALapprox=|2662|0;AS_VarDP=0|72|0;DP=72;QUALapprox=2662;RAW_GT_COUNT=0,0,1;RAW_MQandDP=236733,72;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,72,0:72:99:2662,0,2662:0,0,32,40 +chrX 1495462 . C . . END=1495598 GT:DP:GQ:MIN_DP:PL 0:67:55:61:0,55 +chrX 1495599 . T C, 1673.04 . AS_QUALapprox=|1683|0;AS_VarDP=0|52|0;DP=57;QUALapprox=1683;RAW_GT_COUNT=0,0,1;RAW_MQandDP=204516,57;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:1683,0,1683:0,0,22,30 +chrX 1495600 . G . . END=1496060 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,248 +chrX 1496061 . T C, 2480.04 . AS_QUALapprox=|2490|0;AS_VarDP=0|76|0;DP=79;QUALapprox=2490;RAW_GT_COUNT=0,0,1;RAW_MQandDP=284400,79;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,76,0:76:99:2490,0,2490:0,0,38,38 +chrX 1496062 . T . . END=1496221 GT:DP:GQ:MIN_DP:PL 0:77:99:77:0,1800 +chrX 1496222 . C G, 367.04 . AS_QUALapprox=|377|0;AS_VarDP=31|41|0;BaseQRankSum=1.431;DP=73;MQRankSum=0.000;QUALapprox=377;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;ReadPosRankSum=-0.068;VarDP=72 GT:AD:DP:GQ:PL:SB 1:31,41,0:72:99:377,0,1334:10,21,14,27 +chrX 1496223 . A . . END=1496302 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1800 +chrX 1496303 . A G, 2304.04 . AS_QUALapprox=|2314|0;AS_VarDP=0|71|0;DP=74;QUALapprox=2314;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,71,0:71:99:2314,0,2314:0,0,34,37 +chrX 1496304 . G . . END=1496643 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,497 +chrX 1496644 . G A, 1756.04 . AS_QUALapprox=|1766|0;AS_VarDP=0|48|0;DP=54;QUALapprox=1766;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=48 GT:AD:DP:GQ:PL:SB 1:0,48,0:48:99:1766,0,1766:0,0,26,22 +chrX 1496645 . T . . END=1497046 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,516 +chrX 1497047 . T C, 2320.04 . AS_QUALapprox=|2330|0;AS_VarDP=0|62|0;DP=63;QUALapprox=2330;RAW_GT_COUNT=0,0,1;RAW_MQandDP=225299,63;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:2330,0,2330:0,0,39,23 +chrX 1497048 . G . . END=1497118 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,287 +chrX 1497119 . G C, 195.04 . AS_QUALapprox=|205|0;AS_VarDP=25|30|0;BaseQRankSum=-3.150;DP=59;MQRankSum=-1.277;QUALapprox=205;RAW_GT_COUNT=0,0,1;RAW_MQandDP=209670,59;ReadPosRankSum=0.228;VarDP=55 GT:AD:DP:GQ:PL:SB 1:25,30,0:55:99:205,0,1289:14,11,14,16 +chrX 1497120 . A . . END=1497140 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1648 +chrX 1497141 . C G, 250.04 . AS_QUALapprox=|260|0;AS_VarDP=23|29|0;BaseQRankSum=-1.816;DP=54;MQRankSum=-1.244;QUALapprox=260;RAW_GT_COUNT=0,0,1;RAW_MQandDP=191670,54;ReadPosRankSum=1.632;VarDP=52 GT:AD:DP:GQ:PL:SB 1:23,29,0:52:99:260,0,1274:13,10,15,14 +chrX 1497142 . A . . END=1497178 GT:DP:GQ:MIN_DP:PL 0:47:99:47:0,1385 +chrX 1497179 . G A, 407.04 . AS_QUALapprox=|417|0;AS_VarDP=16|28|0;BaseQRankSum=0.909;DP=46;MQRankSum=-0.709;QUALapprox=417;RAW_GT_COUNT=0,0,1;RAW_MQandDP=163445,46;ReadPosRankSum=0.879;VarDP=44 GT:AD:DP:GQ:PL:SB 1:16,28,0:44:99:417,0,918:11,5,14,14 +chrX 1497180 . C . . END=1497236 GT:DP:GQ:MIN_DP:PL 0:54:59:43:0,59 +chrX 1497237 . G . . END=1497237 GT:DP:GQ:MIN_DP:PL 0:53:0:53:0,0 +chrX 1497238 . A . . END=1497572 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1404 +chrX 1497573 . G A, 605.04 . AS_QUALapprox=|615|0;AS_VarDP=31|44|0;BaseQRankSum=-0.147;DP=76;MQRankSum=2.107;QUALapprox=615;RAW_GT_COUNT=0,0,1;RAW_MQandDP=270294,76;ReadPosRankSum=0.538;VarDP=75 GT:AD:DP:GQ:PL:SB 1:31,44,0:75:99:615,0,1836:12,19,18,26 +chrX 1497574 . C . . END=1497597 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1800 +chrX 1497598 . C T, 535.04 . AS_QUALapprox=|545|0;AS_VarDP=25|36|0;BaseQRankSum=-1.002;DP=63;MQRankSum=2.133;QUALapprox=545;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223494,63;ReadPosRankSum=0.521;VarDP=61 GT:AD:DP:GQ:PL:SB 1:25,36,0:61:99:545,0,1598:9,16,14,22 +chrX 1497599 . G . . END=1498277 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1305 +chrX 1498278 . T C, 394.04 . AS_QUALapprox=|404|0;AS_VarDP=26|33|0;BaseQRankSum=-0.493;DP=59;MQRankSum=-3.214;QUALapprox=404;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180016,59;ReadPosRankSum=2.635;VarDP=59 GT:AD:DP:GQ:PL:SB 1:26,33,0:59:99:404,0,1441:10,16,9,24 +chrX 1498279 . G . . END=1498301 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,457 +chrX 1498302 . A G, 597.04 . AS_QUALapprox=|607|0;AS_VarDP=18|32|0;BaseQRankSum=-0.660;DP=51;MQRankSum=-2.524;QUALapprox=607;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147297,51;ReadPosRankSum=-0.042;VarDP=50 GT:AD:DP:GQ:PL:SB 1:18,32,0:50:99:607,0,1417:5,13,9,23 +chrX 1498303 . G . . END=1498329 GT:DP:GQ:MIN_DP:PL 0:45:99:45:0,1424 +chrX 1498330 . T C, 253.04 . AS_QUALapprox=|263|0;AS_VarDP=17|26|0;BaseQRankSum=-1.355;DP=43;MQRankSum=-3.018;QUALapprox=263;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118497,43;ReadPosRankSum=-1.268;VarDP=43 GT:AD:DP:GQ:PL:SB 1:17,26,0:43:99:263,0,828:7,10,7,19 +chrX 1498331 . G . . END=1498565 GT:DP:GQ:MIN_DP:PL 0:34:29:32:0,29 +chrX 1498566 . A G, 92.04 . AS_QUALapprox=|102|0;AS_VarDP=16|19|0;BaseQRankSum=1.133;DP=36;MQRankSum=-1.888;QUALapprox=102;RAW_GT_COUNT=0,0,1;RAW_MQandDP=124755,36;ReadPosRankSum=-0.928;VarDP=35 GT:AD:DP:GQ:PL:SB 1:16,19,0:35:99:102,0,573:11,5,10,9 +chrX 1498567 . G . . END=1498707 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,1235 +chrX 1498708 . C . . END=1498708 GT:DP:GQ:MIN_DP:PL 0:58:0:58:0,0 +chrX 1498709 . G . . END=1498947 GT:DP:GQ:MIN_DP:PL 0:58:49:58:0,49 +chrX 1498948 . C T, 101.04 . AS_QUALapprox=|111|0;AS_VarDP=26|29|0;BaseQRankSum=-0.175;DP=58;MQRankSum=0.000;QUALapprox=111;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;ReadPosRankSum=1.560;VarDP=55 GT:AD:DP:GQ:PL:SB 1:26,29,0:55:99:111,0,968:16,10,17,12 +chrX 1498949 . C . . END=1499021 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,144 +chrX 1499022 . A G, 64.04 . AS_QUALapprox=|74|0;AS_VarDP=35|37|0;BaseQRankSum=-0.007;DP=74;MQRankSum=1.056;QUALapprox=74;RAW_GT_COUNT=0,0,1;RAW_MQandDP=264400,74;ReadPosRankSum=-0.885;VarDP=72 GT:AD:DP:GQ:PL:SB 1:35,37,0:72:74:74,0,1150:21,14,22,15 +chrX 1499023 . C . . END=1499112 GT:DP:GQ:MIN_DP:PL 0:83:99:83:0,1800 +chrX 1499113 . A G, 203.04 . AS_QUALapprox=|213|0;AS_VarDP=34|42|0;BaseQRankSum=-0.577;DP=78;MQRankSum=-1.262;QUALapprox=213;RAW_GT_COUNT=0,0,1;RAW_MQandDP=279650,78;ReadPosRankSum=0.225;VarDP=76 GT:AD:DP:GQ:PL:SB 1:34,42,0:76:99:213,0,1264:12,22,23,19 +chrX 1499114 . T . . END=1499160 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1440 +chrX 1499161 . TTC T, 254.01 . AS_QUALapprox=|264|0;AS_VarDP=27|34|0;BaseQRankSum=0.197;DP=65;MQRankSum=-1.810;QUALapprox=264;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230380,65;ReadPosRankSum=1.856;VarDP=61 GT:AD:DP:GQ:PL:SB 1:27,34,0:61:99:264,0,1227:10,17,16,18 +chrX 1499164 . T . . END=1499164 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1350 +chrX 1499165 . T G, 254.04 . AS_QUALapprox=|264|0;AS_VarDP=27|34|0;BaseQRankSum=-1.464;DP=64;MQRankSum=-1.810;QUALapprox=264;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226780,64;ReadPosRankSum=1.776;VarDP=61 GT:AD:DP:GQ:PL:SB 1:27,34,0:61:99:264,0,1227:10,17,16,18 +chrX 1499166 . T . . END=1499331 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1236 +chrX 1499332 . A . . END=1499332 GT:DP:GQ:MIN_DP:PL 0:60:0:60:0,0 +chrX 1499333 . T . . END=1499341 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1800 +chrX 1499342 . T . . END=1499342 GT:DP:GQ:MIN_DP:PL 0:58:0:58:0,0 +chrX 1499343 . T . . END=1499546 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,168 +chrX 1499547 . T A, 74.04 . AS_QUALapprox=|84|0;AS_VarDP=30|32|0;BaseQRankSum=0.974;DP=62;MQRankSum=0.000;QUALapprox=84;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;ReadPosRankSum=1.670;VarDP=62 GT:AD:DP:GQ:PL:SB 1:30,32,0:62:84:84,0,1032:12,18,19,13 +chrX 1499548 . A . . END=1499839 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1800 +chrX 1499840 . TTTTTGTTTTG T, 456.01 . AS_QUALapprox=|466|0;AS_VarDP=22|33|0;BaseQRankSum=-1.030;DP=76;MQRankSum=1.262;QUALapprox=466;RAW_GT_COUNT=0,0,1;RAW_MQandDP=268578,76;ReadPosRankSum=-1.230;VarDP=55 GT:AD:DP:GQ:PL:SB 1:22,33,0:55:99:466,0,1456:7,15,24,9 +chrX 1499851 . T . . END=1500059 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1146 +chrX 1500060 . G A, 1946.04 . AS_QUALapprox=|1956|0;AS_VarDP=0|59|0;DP=61;QUALapprox=1956;RAW_GT_COUNT=0,0,1;RAW_MQandDP=204580,61;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:1956,0,1956:0,0,23,36 +chrX 1500061 . T . . END=1500181 GT:DP:GQ:MIN_DP:PL 0:74:99:74:0,431 +chrX 1500182 . T C, 535.04 . AS_QUALapprox=|545|0;AS_VarDP=27|45|0;BaseQRankSum=-0.299;DP=82;MQRankSum=1.043;QUALapprox=545;RAW_GT_COUNT=0,0,1;RAW_MQandDP=288025,82;ReadPosRankSum=-1.774;VarDP=72 GT:AD:DP:GQ:PL:SB 1:27,45,0:72:99:545,0,1419:18,9,16,29 +chrX 1500183 . T . . END=1500679 GT:DP:GQ:MIN_DP:PL 0:75:99:75:0,1800 +chrX 1500680 . C T, 77.04 . AS_QUALapprox=|87|0;AS_VarDP=33|35|0;BaseQRankSum=0.160;DP=70;MQRankSum=0.000;QUALapprox=87;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;ReadPosRankSum=-0.172;VarDP=68 GT:AD:DP:GQ:PL:SB 1:33,35,0:68:87:87,0,1167:14,19,12,23 +chrX 1500681 . C . . END=1500693 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1800 +chrX 1500694 . A C, 88.04 . AS_QUALapprox=|98|0;AS_VarDP=33|35|0;BaseQRankSum=-1.598;DP=70;MQRankSum=0.000;QUALapprox=98;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;ReadPosRankSum=-0.424;VarDP=68 GT:AD:DP:GQ:PL:SB 1:33,35,0:68:98:98,0,1544:13,20,12,23 +chrX 1500695 . A . . END=1500698 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1800 +chrX 1500699 . A T, 129.04 . AS_QUALapprox=|139|0;AS_VarDP=32|35|0;BaseQRankSum=-0.547;DP=70;MQRankSum=0.000;QUALapprox=139;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;ReadPosRankSum=-0.490;VarDP=67 GT:AD:DP:GQ:PL:SB 1:32,35,0:67:99:139,0,1553:13,19,11,24 +chrX 1500700 . G . . END=1501738 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1524 +chrX 1501739 . G A, 440.04 . AS_QUALapprox=|450|0;AS_VarDP=17|27|0;BaseQRankSum=0.961;DP=45;MQRankSum=-1.102;QUALapprox=450;RAW_GT_COUNT=0,0,1;RAW_MQandDP=157625,45;ReadPosRankSum=-0.478;VarDP=44 GT:AD:DP:GQ:PL:SB 1:17,27,0:44:99:450,0,1215:11,6,16,11 +chrX 1501740 . C . . END=1501742 GT:DP:GQ:MIN_DP:PL 0:43:99:43:0,1384 +chrX 1501743 . A C, 415.04 . AS_QUALapprox=|425|0;AS_VarDP=18|27|0;BaseQRankSum=-0.345;DP=45;MQRankSum=-1.135;QUALapprox=425;RAW_GT_COUNT=0,0,1;RAW_MQandDP=157625,45;ReadPosRankSum=-0.096;VarDP=45 GT:AD:DP:GQ:PL:SB 1:18,27,0:45:99:425,0,1215:11,7,16,11 +chrX 1501744 . C . . END=1501754 GT:DP:GQ:MIN_DP:PL 0:45:99:45:0,1429 +chrX 1501755 . G A, 268.04 . AS_QUALapprox=|278|0;AS_VarDP=23|27|0;BaseQRankSum=1.380;DP=50;MQRankSum=-1.290;QUALapprox=278;RAW_GT_COUNT=0,0,1;RAW_MQandDP=175625,50;ReadPosRankSum=1.373;VarDP=50 GT:AD:DP:GQ:PL:SB 1:23,27,0:50:99:278,0,1184:13,10,17,10 +chrX 1501756 . G . . END=1502816 GT:DP:GQ:MIN_DP:PL 0:64:54:60:0,54 +chrX 1502817 . A G, 3369.04 . AS_QUALapprox=|3379|0;AS_VarDP=3|79|0;BaseQRankSum=2.672;DP=84;MQRankSum=0.470;QUALapprox=3379;RAW_GT_COUNT=0,0,1;RAW_MQandDP=272596,84;ReadPosRankSum=0.663;VarDP=82 GT:AD:DP:GQ:PL:SB 1:3,79,0:82:99:3379,0,3498:1,2,44,35 +chrX 1502818 . C . . END=1502822 GT:DP:GQ:MIN_DP:PL 0:80:99:80:0,1800 +chrX 1502823 . C A, 3410.04 . AS_QUALapprox=|3420|0;AS_VarDP=3|79|0;BaseQRankSum=2.409;DP=82;MQRankSum=0.470;QUALapprox=3420;RAW_GT_COUNT=0,0,1;RAW_MQandDP=267315,82;ReadPosRankSum=0.704;VarDP=82 GT:AD:DP:GQ:PL:SB 1:3,79,0:82:99:3420,0,3539:1,2,44,35 +chrX 1502824 . C . . END=1502828 GT:DP:GQ:MIN_DP:PL 0:81:99:81:0,1800 +chrX 1502829 . A G, 3455.04 . AS_QUALapprox=|3465|0;AS_VarDP=3|80|0;BaseQRankSum=2.708;DP=83;MQRankSum=0.481;QUALapprox=3465;RAW_GT_COUNT=0,0,1;RAW_MQandDP=270915,83;ReadPosRankSum=0.801;VarDP=83 GT:AD:DP:GQ:PL:SB 1:3,80,0:83:99:3465,0,3584:1,2,44,36 +chrX 1502830 . T . . END=1502832 GT:DP:GQ:MIN_DP:PL 0:80:99:80:0,1800 +chrX 1502833 . C T, 3390.04 . AS_QUALapprox=|3400|0;AS_VarDP=3|79|0;BaseQRankSum=1.847;DP=82;MQRankSum=0.507;QUALapprox=3400;RAW_GT_COUNT=0,0,1;RAW_MQandDP=269151,82;ReadPosRankSum=-0.016;VarDP=82 GT:AD:DP:GQ:PL:SB 1:3,79,0:82:99:3400,0,3518:1,2,42,37 +chrX 1502834 . G . . END=1502841 GT:DP:GQ:MIN_DP:PL 0:75:99:75:0,1800 +chrX 1502842 . A G, 3324.04 . AS_QUALapprox=|3334|0;AS_VarDP=0|75|0;DP=76;QUALapprox=3334;RAW_GT_COUNT=0,0,1;RAW_MQandDP=254148,76;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,75,0:75:99:3334,0,3334:0,0,38,37 +chrX 1502843 . A . . END=1503404 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1309 +chrX 1503405 . A G, 1860.04 . AS_QUALapprox=|1870|0;AS_VarDP=0|56|0;DP=63;QUALapprox=1870;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,56,0:56:99:1870,0,1870:0,0,30,26 +chrX 1503406 . C . . END=1504109 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1785 +chrX 1504110 . A G, 1995.04 . AS_QUALapprox=|2005|0;AS_VarDP=0|59|0;DP=60;QUALapprox=2005;RAW_GT_COUNT=0,0,1;RAW_MQandDP=213725,60;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:2005,0,2005:0,0,32,27 +chrX 1504111 . T . . END=1504314 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,154 +chrX 1504315 . C CAA, 1985.01 . AS_QUALapprox=|1995|0;AS_VarDP=0|58|0;DP=73;QUALapprox=1995;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255566,73;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,58,0:58:99:1995,0,1996:0,0,26,32 +chrX 1504316 . A . . END=1504706 GT:DP:GQ:MIN_DP:PL 0:68:44:68:0,44 +chrX 1504707 . T C, 2464.04 . AS_QUALapprox=|2474|0;AS_VarDP=0|79|0;DP=85;QUALapprox=2474;RAW_GT_COUNT=0,0,1;RAW_MQandDP=304634,85;VarDP=79 GT:AD:DP:GQ:PL:SB 1:0,79,0:79:99:2474,0,2474:0,0,38,41 +chrX 1504708 . C . . END=1504902 GT:DP:GQ:MIN_DP:PL 0:81:52:79:0,52 +chrX 1504903 . C T, 49.04 . AS_QUALapprox=|59|0;AS_VarDP=35|37|0;BaseQRankSum=-0.085;DP=73;MQRankSum=-1.692;QUALapprox=59;RAW_GT_COUNT=0,0,1;RAW_MQandDP=258525,73;ReadPosRankSum=0.349;VarDP=72 GT:AD:DP:GQ:PL:SB 1:35,37,0:72:59:59,0,1160:17,18,18,19 +chrX 1504904 . G . . END=1505136 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,124 +chrX 1505137 . C CAAAAAAA, 240.01 . AS_QUALapprox=|250|0;AS_VarDP=15|22|0;BaseQRankSum=-1.282;DP=61;MQRankSum=-1.182;QUALapprox=250;RAW_GT_COUNT=0,0,1;RAW_MQandDP=207322,61;ReadPosRankSum=-2.406;VarDP=37 GT:AD:DP:GQ:PL:SB 1:15,22,0:37:99:250,0,927:8,7,8,14 +chrX 1505138 . A . . END=1505525 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1448 +chrX 1505526 . C A, 2061.04 . AS_QUALapprox=|2071|0;AS_VarDP=0|61|0;DP=63;QUALapprox=2071;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,61,0:61:99:2071,0,2071:0,0,39,22 +chrX 1505527 . G . . END=1505548 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1800 +chrX 1505549 . G C, 108.04 . AS_QUALapprox=|118|0;AS_VarDP=29|33|0;BaseQRankSum=-0.360;DP=65;MQRankSum=0.000;QUALapprox=118;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;ReadPosRankSum=0.289;VarDP=62 GT:AD:DP:GQ:PL:SB 1:29,33,0:62:99:118,0,1061:21,8,22,11 +chrX 1505550 . G . . END=1506078 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,939 +chrX 1506079 . G A, 45.04 . AS_QUALapprox=|55|0;AS_VarDP=24|25|0;BaseQRankSum=0.711;DP=51;MQRankSum=1.488;QUALapprox=55;RAW_GT_COUNT=0,0,1;RAW_MQandDP=181634,51;ReadPosRankSum=-0.540;VarDP=49 GT:AD:DP:GQ:PL:SB 1:24,25,0:49:55:55,0,794:13,11,13,12 +chrX 1506080 . C . . END=1506814 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1648 +chrX 1506815 . T C, 354.04 . AS_QUALapprox=|364|0;AS_VarDP=27|36|0;BaseQRankSum=0.561;DP=64;MQRankSum=-0.318;QUALapprox=364;RAW_GT_COUNT=0,0,1;RAW_MQandDP=199021,64;ReadPosRankSum=-0.980;VarDP=63 GT:AD:DP:GQ:PL:SB 1:27,36,0:63:99:364,0,1528:11,16,20,16 +chrX 1506816 . T . . END=1506822 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1800 +chrX 1506823 . A G, 2738.04 . AS_QUALapprox=|2748|0;AS_VarDP=0|62|0;DP=62;QUALapprox=2748;RAW_GT_COUNT=0,0,1;RAW_MQandDP=191585,62;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:2748,0,2748:0,0,31,31 +chrX 1506824 . C . . END=1506877 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,193 +chrX 1506878 . G T, 2159.04 . AS_QUALapprox=|2169|0;AS_VarDP=0|65|0;DP=65;QUALapprox=2169;RAW_GT_COUNT=0,0,1;RAW_MQandDP=197783,65;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,65,0:65:99:2169,0,2169:0,0,40,25 +chrX 1506879 . T . . END=1506967 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1364 +chrX 1506968 . G . . END=1506968 GT:DP:GQ:MIN_DP:PL 0:56:12:56:0,12 +chrX 1506969 . C . . END=1507024 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,337 +chrX 1507025 . C CCCCATGGCTAAAGTTAAGATGCAATTTAGGTGGAAGCGA,CCCCATGGCTAAAGTTAAGATGCAATTTAGTTGGAAGCGA, 2737.01 . AS_QUALapprox=|1351|2747|0;AS_VarDP=0|3|43|0;DP=65;QUALapprox=2747;RAW_GT_COUNT=0,0,1;RAW_MQandDP=232426,65;VarDP=46 GT:AD:DP:GQ:PL:SB 2:0,3,43,0:46:99:2747,1396,0,2440:0,0,20,26 +chrX 1507026 . C . . END=1507163 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,377 +chrX 1507164 . T C, 237.04 . AS_QUALapprox=|247|0;AS_VarDP=28|32|0;BaseQRankSum=3.097;DP=63;MQRankSum=0.000;QUALapprox=247;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;ReadPosRankSum=-0.875;VarDP=60 GT:AD:DP:GQ:PL:SB 1:28,32,0:60:99:247,0,1091:14,14,16,16 +chrX 1507165 . C . . END=1507209 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1748 +chrX 1507210 . G C, 224.04 . AS_QUALapprox=|234|0;AS_VarDP=23|29|0;BaseQRankSum=1.810;DP=54;MQRankSum=0.000;QUALapprox=234;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;ReadPosRankSum=1.760;VarDP=52 GT:AD:DP:GQ:PL:SB 1:23,29,0:52:99:234,0,973:9,14,19,10 +chrX 1507211 . A . . END=1507316 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1384 +chrX 1507317 . A G, 246.04 . AS_QUALapprox=|256|0;AS_VarDP=15|24|0;BaseQRankSum=-1.618;DP=41;MQRankSum=0.000;QUALapprox=256;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147600,41;ReadPosRankSum=-0.491;VarDP=39 GT:AD:DP:GQ:PL:SB 1:15,24,0:39:99:256,0,777:9,6,12,12 +chrX 1507318 . G . . END=1507350 GT:DP:GQ:MIN_DP:PL 0:42:99:42:0,1205 +chrX 1507351 . T G, 1717.04 . AS_QUALapprox=|1727|0;AS_VarDP=0|53|0;DP=55;QUALapprox=1727;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=53 GT:AD:DP:GQ:PL:SB 1:0,53,0:53:99:1727,0,1727:0,0,28,25 +chrX 1507352 . C . . END=1507377 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,1676 +chrX 1507378 . C G, 1816.04 . AS_QUALapprox=|1826|0;AS_VarDP=0|56|0;DP=57;QUALapprox=1826;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,56,0:56:99:1826,0,1826:0,0,30,26 +chrX 1507379 . C . . END=1507647 GT:DP:GQ:MIN_DP:PL 0:75:99:75:0,442 +chrX 1507648 . G A, 0.89 . AS_QUALapprox=|10|0;AS_VarDP=36|35|0;BaseQRankSum=0.793;DP=75;MQRankSum=0.000;QUALapprox=10;RAW_GT_COUNT=0,0,1;RAW_MQandDP=270000,75;ReadPosRankSum=-0.575;VarDP=71 GT:AD:DP:GQ:PL:SB 1:36,35,0:71:10:10,0,1136:18,18,13,22 +chrX 1507649 . G . . END=1507951 GT:DP:GQ:MIN_DP:PL 0:73:84:73:0,84 +chrX 1507952 . A . . END=1507952 GT:DP:GQ:MIN_DP:PL 0:66:1:66:0,1 +chrX 1507953 . G . . END=1508600 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1696 +chrX 1508601 . CATCT C, 282.01 . AS_QUALapprox=|292|0;AS_VarDP=26|33|0;BaseQRankSum=-0.836;DP=64;MQRankSum=-3.027;QUALapprox=292;RAW_GT_COUNT=0,0,1;RAW_MQandDP=213272,64;ReadPosRankSum=0.102;VarDP=59 GT:AD:DP:GQ:PL:SB 1:26,33,0:59:99:292,0,1462:15,11,14,19 +chrX 1508606 . A . . END=1509001 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,919 +chrX 1509002 . TCATCCATC T,TCATCCATCCATC, 1487.01 . AS_QUALapprox=|0|1497|0;AS_VarDP=0|4|35|0;DP=69;QUALapprox=1497;RAW_GT_COUNT=0,0,1;RAW_MQandDP=222134,69;VarDP=39 GT:AD:DP:GQ:PL:SB 2:0,4,35,0:39:99:1497,1896,0,1951:0,0,18,21 +chrX 1509011 . C . . END=1509160 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1165 +chrX 1509161 . TTCTATCTA T,TTCTA, 1017.01 . AS_QUALapprox=|580|1027|0;AS_VarDP=1|15|24|0;DP=52;QUALapprox=1027;RAW_GT_COUNT=0,0,1;RAW_MQandDP=179645,52;VarDP=40 GT:AD:DP:GQ:PL:SB 2:1,15,24,0:40:99:1027,447,0,1100:0,0,17,22 +chrX 1509170 . T . . END=1509262 GT:DP:GQ:MIN_DP:PL 0:42:99:42:0,145 +chrX 1509263 . CATCT C, 119.01 . AS_QUALapprox=|129|0;AS_VarDP=18|20|0;BaseQRankSum=0.616;DP=45;MQRankSum=-1.322;QUALapprox=129;RAW_GT_COUNT=0,0,1;RAW_MQandDP=155731,45;ReadPosRankSum=-0.427;VarDP=38 GT:AD:DP:GQ:PL:SB 1:18,20,0:38:99:129,0,889:7,11,12,8 +chrX 1509268 . A . . END=1509373 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,1395 +chrX 1509374 . TTCTATCTATCTATCTATCTA T, 179.01 . AS_QUALapprox=|189|0;AS_VarDP=18|22|0;BaseQRankSum=0.000;DP=53;MQRankSum=-2.123;QUALapprox=189;RAW_GT_COUNT=0,0,1;RAW_MQandDP=157502,53;ReadPosRankSum=-1.914;VarDP=40 GT:AD:DP:GQ:PL:SB 1:18,22,0:40:99:189,0,987:11,7,9,13 +chrX 1509395 . T . . END=1509514 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1407 +chrX 1509515 . T TCATC, 97.01 . AS_QUALapprox=|107|0;AS_VarDP=15|17|0;BaseQRankSum=0.709;DP=52;MQRankSum=-3.261;QUALapprox=107;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140766,52;ReadPosRankSum=0.605;VarDP=32 GT:AD:DP:GQ:PL:SB 1:15,17,0:32:99:107,0,759:6,9,6,11 +chrX 1509516 . C . . END=1509981 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,199 +chrX 1509982 . C CATCT, 99.01 . AS_QUALapprox=|109|0;AS_VarDP=23|25|0;BaseQRankSum=2.457;DP=53;MQRankSum=-0.917;QUALapprox=109;RAW_GT_COUNT=0,0,1;RAW_MQandDP=189136,53;ReadPosRankSum=0.816;VarDP=48 GT:AD:DP:GQ:PL:SB 1:23,25,0:48:99:109,0,1109:17,6,19,6 +chrX 1509983 . A . . END=1511535 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1537 +chrX 1511536 . A T, 432.04 . AS_QUALapprox=|442|0;AS_VarDP=31|45|0;BaseQRankSum=-0.261;DP=77;MQRankSum=0.000;QUALapprox=442;RAW_GT_COUNT=0,0,1;RAW_MQandDP=277200,77;ReadPosRankSum=0.412;VarDP=76 GT:AD:DP:GQ:PL:SB 1:31,45,0:76:99:442,0,1443:19,12,25,20 +chrX 1511537 . A . . END=1511711 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1772 +chrX 1511712 . C T, 196.04 . AS_QUALapprox=|206|0;AS_VarDP=28|33|0;BaseQRankSum=0.405;DP=66;MQRankSum=0.000;QUALapprox=206;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;ReadPosRankSum=-0.051;VarDP=61 GT:AD:DP:GQ:PL:SB 1:28,33,0:61:99:206,0,1094:14,14,14,19 +chrX 1511713 . C . . END=1512545 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,945 +chrX 1512546 . C CA,CAA, 695.01 . AS_QUALapprox=|442|705|0;AS_VarDP=0|6|19|0;DP=57;QUALapprox=705;RAW_GT_COUNT=0,0,1;RAW_MQandDP=197737,57;VarDP=25 GT:AD:DP:GQ:PL:SB 2:0,6,19,0:25:99:705,263,0,546:0,0,17,8 +chrX 1512547 . A . . END=1512835 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1498 +chrX 1512836 . AATTATT A, 2093.01 . AS_QUALapprox=|2103|0;AS_VarDP=0|48|0;DP=66;QUALapprox=2103;RAW_GT_COUNT=0,0,1;RAW_MQandDP=235225,66;VarDP=48 GT:AD:DP:GQ:PL:SB 1:0,48,0:48:99:2103,0,2103:0,0,23,25 +chrX 1512843 . A . . END=1512900 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,1514 +chrX 1512901 . C G, 2089.04 . AS_QUALapprox=|2099|0;AS_VarDP=0|48|0;DP=49;QUALapprox=2099;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172748,49;VarDP=48 GT:AD:DP:GQ:PL:SB 1:0,48,0:48:99:2099,0,2099:0,0,25,23 +chrX 1512902 . T . . END=1512925 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,1504 +chrX 1512926 . G A, 2319.04 . AS_QUALapprox=|2329|0;AS_VarDP=0|52|0;DP=52;QUALapprox=2329;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180766,52;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:2329,0,2329:0,0,30,22 +chrX 1512927 . T . . END=1512927 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,1733 +chrX 1512928 . A G, 2319.04 . AS_QUALapprox=|2329|0;AS_VarDP=0|52|0;DP=52;QUALapprox=2329;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180766,52;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:2329,0,2329:0,0,30,22 +chrX 1512929 . T . . END=1513021 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1490 +chrX 1513022 . C T, 1337.04 . AS_QUALapprox=|1347|0;AS_VarDP=0|42|0;DP=46;QUALapprox=1347;RAW_GT_COUNT=0,0,1;RAW_MQandDP=160841,46;VarDP=42 GT:AD:DP:GQ:PL:SB 1:0,42,0:42:99:1347,0,1347:0,0,12,30 +chrX 1513023 . C . . END=1513206 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,753 +chrX 1513207 . T C, 61.04 . AS_QUALapprox=|71|0;AS_VarDP=31|31|0;BaseQRankSum=1.201;DP=66;MQRankSum=0.000;QUALapprox=71;RAW_GT_COUNT=0,0,1;RAW_MQandDP=236500,66;ReadPosRankSum=-0.317;VarDP=62 GT:AD:DP:GQ:PL:SB 1:31,31,0:62:71:71,0,1066:15,16,17,14 +chrX 1513208 . T . . END=1513213 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1793 +chrX 1513214 . A G, 2345.04 . AS_QUALapprox=|2355|0;AS_VarDP=0|63|0;DP=67;QUALapprox=2355;RAW_GT_COUNT=0,0,1;RAW_MQandDP=240100,67;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,63,0:63:99:2355,0,2355:0,0,32,31 +chrX 1513215 . C . . END=1513245 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1800 +chrX 1513246 . C CT, 1571.01 . AS_QUALapprox=|1581|0;AS_VarDP=0|57|0;DP=63;QUALapprox=1581;RAW_GT_COUNT=0,0,1;RAW_MQandDP=225700,63;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:1581,0,1581:0,0,27,30 +chrX 1513247 . T . . END=1513487 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1497 +chrX 1513488 . C G, 18.04 . AS_QUALapprox=|28|0;AS_VarDP=24|28|0;BaseQRankSum=-2.340;DP=53;MQRankSum=0.000;QUALapprox=28;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;ReadPosRankSum=-0.679;VarDP=52 GT:AD:DP:GQ:PL:SB 1:24,28,0:52:28:28,0,843:7,17,14,14 +chrX 1513489 . T . . END=1514179 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1379 +chrX 1514180 . C T, 1950.04 . AS_QUALapprox=|1960|0;AS_VarDP=0|60|0;DP=61;QUALapprox=1960;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:1960,0,1960:0,0,31,29 +chrX 1514181 . C . . END=1514328 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1534 +chrX 1514329 . TCTTTC T, 99.01 . AS_QUALapprox=|109|0;AS_VarDP=29|31|0;BaseQRankSum=-2.047;DP=69;MQRankSum=1.498;QUALapprox=109;RAW_GT_COUNT=0,0,1;RAW_MQandDP=240387,69;ReadPosRankSum=0.918;VarDP=60 GT:AD:DP:GQ:PL:SB 1:29,31,0:60:99:109,0,1322:13,16,17,14 +chrX 1514335 . C . . END=1514435 GT:DP:GQ:MIN_DP:PL 0:11:33:10:0,33 +chrX 1514436 . T . . END=1514436 GT:DP:GQ:MIN_DP:PL 0:10:0:10:0,0 +chrX 1514437 . C . . END=1514438 GT:DP:GQ:MIN_DP:PL 0:10:45:10:0,45 +chrX 1514439 . T . . END=1514439 GT:DP:GQ:MIN_DP:PL 0:10:0:10:0,0 +chrX 1514440 . C . . END=1514448 GT:DP:GQ:MIN_DP:PL 0:10:45:10:0,45 +chrX 1514449 . T . . END=1514449 GT:DP:GQ:MIN_DP:PL 0:8:0:8:0,0 +chrX 1514450 . C . . END=1514461 GT:DP:GQ:MIN_DP:PL 0:6:99:6:0,135 +chrX 1514462 . C . . END=1514463 GT:DP:GQ:MIN_DP:PL 0:5:0:5:0,0 +chrX 1514464 . C . . END=1514551 GT:DP:GQ:MIN_DP:PL 0:7:35:5:0,35 +chrX 1514552 . C . . END=1514556 GT:DP:GQ:MIN_DP:PL 0:15:0:15:0,0 +chrX 1514557 . C . . END=1514558 GT:DP:GQ:MIN_DP:PL 0:16:99:16:0,516 +chrX 1514559 . T . . END=1514559 GT:DP:GQ:MIN_DP:PL 0:14:0:14:0,0 +chrX 1514560 . C . . END=1514623 GT:DP:GQ:MIN_DP:PL 0:18:99:18:0,207 +chrX 1514624 . C . . END=1514624 GT:DP:GQ:MIN_DP:PL 0:19:0:19:0,0 +chrX 1514625 . C . . END=1514660 GT:DP:GQ:MIN_DP:PL 0:13:99:13:0,238 +chrX 1514661 . C . . END=1514661 GT:DP:GQ:MIN_DP:PL 0:13:0:13:0,0 +chrX 1514662 . T . . END=1514675 GT:DP:GQ:MIN_DP:PL 0:12:99:12:0,218 +chrX 1514676 . T . . END=1514676 GT:DP:GQ:MIN_DP:PL 0:14:0:14:0,0 +chrX 1514677 . T . . END=1514683 GT:DP:GQ:MIN_DP:PL 0:14:99:14:0,217 +chrX 1514684 . C . . END=1514684 GT:DP:GQ:MIN_DP:PL 0:16:0:16:0,0 +chrX 1514685 . C . . END=1514834 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,193 +chrX 1514835 . T TTCCCTTTTCCTTTCCTTCCCTTCCC, 28 . AS_QUALapprox=|38|0;AS_VarDP=6|6|0;BaseQRankSum=-0.723;DP=29;MQRankSum=0.349;QUALapprox=38;RAW_GT_COUNT=0,0,1;RAW_MQandDP=87869,29;ReadPosRankSum=-0.155;VarDP=12 GT:AD:DP:GQ:PL:SB 1:6,6,0:12:38:38,0,249:1,5,1,5 +chrX 1514836 . T . . END=1514884 GT:DP:GQ:MIN_DP:PL 0:16:40:8:0,40 +chrX 1514885 . T . . END=1514896 GT:DP:GQ:MIN_DP:PL 0:15:0:11:0,0 +chrX 1514897 . C . . END=1514898 GT:DP:GQ:MIN_DP:PL 0:13:35:13:0,35 +chrX 1514899 . C . . END=1514899 GT:DP:GQ:MIN_DP:PL 0:21:0:21:0,0 +chrX 1514900 . C . . END=1515375 GT:DP:GQ:MIN_DP:PL 0:47:99:47:0,391 +chrX 1515376 . CT C,CTT, 341.01 . AS_QUALapprox=|247|351|0;AS_VarDP=0|18|22|0;DP=56;QUALapprox=351;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198050,56;VarDP=40 GT:AD:DP:GQ:PL:SB 2:0,18,22,0:40:99:351,104,0,550:0,0,21,19 +chrX 1515378 . T . . END=1515800 GT:DP:GQ:MIN_DP:PL 0:50:39:47:0,39 +chrX 1515801 . A C, 107.04 . AS_QUALapprox=|117|0;AS_VarDP=31|37|0;BaseQRankSum=-2.404;DP=72;MQRankSum=0.000;QUALapprox=117;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;ReadPosRankSum=-0.197;VarDP=68 GT:AD:DP:GQ:PL:SB 1:31,37,0:68:99:117,0,1175:17,14,19,18 +chrX 1515802 . G . . END=1515829 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1800 +chrX 1515830 . G A, 187.04 . AS_QUALapprox=|197|0;AS_VarDP=25|32|0;BaseQRankSum=-0.373;DP=60;MQRankSum=0.000;QUALapprox=197;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;ReadPosRankSum=0.507;VarDP=57 GT:AD:DP:GQ:PL:SB 1:25,32,0:57:99:197,0,985:16,9,19,13 +chrX 1515831 . G . . END=1516019 GT:DP:GQ:MIN_DP:PL 0:45:99:45:0,158 +chrX 1516020 . TAAA T,CAAA, 485.01 . AS_QUALapprox=|495|0|0;AS_VarDP=11|23|1|0;BaseQRankSum=0.765;DP=43;MQRankSum=-1.415;QUALapprox=495;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147173,43;ReadPosRankSum=0.995;VarDP=35 GT:AD:DP:GQ:PL:SB 1:11,23,1,0:35:99:495,0,1000,1224:3,8,8,15 +chrX 1516024 . A . . END=1516037 GT:DP:GQ:MIN_DP:PL 0:39:99:39:0,1200 +chrX 1516038 . A G, 562.04 . AS_QUALapprox=|572|0;AS_VarDP=12|26|0;BaseQRankSum=-0.465;DP=40;MQRankSum=-1.385;QUALapprox=572;RAW_GT_COUNT=0,0,1;RAW_MQandDP=138373,40;ReadPosRankSum=0.408;VarDP=38 GT:AD:DP:GQ:PL:SB 1:12,26,0:38:99:572,0,1112:4,8,9,17 +chrX 1516039 . T . . END=1516215 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1341 +chrX 1516216 . C CA,CAAA, 978.01 . AS_QUALapprox=|988|641|0;AS_VarDP=1|31|23|0;BaseQRankSum=2.214;DP=60;MQRankSum=0.000;QUALapprox=988;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;ReadPosRankSum=0.315;VarDP=55 GT:AD:DP:GQ:PL:SB 1:1,31,23,0:55:99:988,0,347,1093:0,1,33,21 +chrX 1516217 . A . . END=1516392 GT:DP:GQ:MIN_DP:PL 0:58:39:56:0,39 +chrX 1516393 . G T, 1663.04 . AS_QUALapprox=|1673|0;AS_VarDP=2|52|0;BaseQRankSum=1.594;DP=57;MQRankSum=-0.410;QUALapprox=1673;RAW_GT_COUNT=0,0,1;RAW_MQandDP=200888,57;ReadPosRankSum=-1.008;VarDP=54 GT:AD:DP:GQ:PL:SB 1:2,52,0:54:99:1673,0,1727:1,1,24,28 +chrX 1516394 . C . . END=1516432 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,1439 +chrX 1516433 . A G, 1517.04 . AS_QUALapprox=|1527|0;AS_VarDP=0|46|0;DP=50;QUALapprox=1527;RAW_GT_COUNT=0,0,1;RAW_MQandDP=175017,50;VarDP=46 GT:AD:DP:GQ:PL:SB 1:0,46,0:46:99:1527,0,1527:0,0,19,27 +chrX 1516434 . C . . END=1516458 GT:DP:GQ:MIN_DP:PL 0:47:99:47:0,1399 +chrX 1516459 . T C, 2368.04 . AS_QUALapprox=|2378|0;AS_VarDP=0|54|0;DP=54;QUALapprox=2378;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187305,54;VarDP=54 GT:AD:DP:GQ:PL:SB 1:0,54,0:54:99:2378,0,2378:0,0,23,31 +chrX 1516460 . T . . END=1516467 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,1683 +chrX 1516468 . G A, 2310.04 . AS_QUALapprox=|2320|0;AS_VarDP=0|52|0;DP=52;QUALapprox=2320;RAW_GT_COUNT=0,0,1;RAW_MQandDP=177234,52;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:2320,0,2320:0,0,22,30 +chrX 1516469 . C . . END=1516481 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1658 +chrX 1516482 . G A, 2304.04 . AS_QUALapprox=|2314|0;AS_VarDP=0|53|0;DP=54;QUALapprox=2314;RAW_GT_COUNT=0,0,1;RAW_MQandDP=182004,54;VarDP=53 GT:AD:DP:GQ:PL:SB 1:0,53,0:53:99:2314,0,2314:0,0,25,28 +chrX 1516483 . T . . END=1516735 GT:DP:GQ:MIN_DP:PL 0:75:99:75:0,1800 +chrX 1516736 . A G, 1999.04 . AS_QUALapprox=|2009|0;AS_VarDP=0|61|0;DP=63;QUALapprox=2009;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,61,0:61:99:2009,0,2009:0,0,31,30 +chrX 1516737 . A . . END=1516771 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1677 +chrX 1516772 . G A, 1497.04 . AS_QUALapprox=|1507|0;AS_VarDP=3|50|0;BaseQRankSum=1.997;DP=55;MQRankSum=0.000;QUALapprox=1507;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;ReadPosRankSum=-0.616;VarDP=53 GT:AD:DP:GQ:PL:SB 1:3,50,0:53:99:1507,0,1561:1,2,27,23 +chrX 1516773 . A . . END=1517111 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1605 +chrX 1517112 . T G, 2623.04 . AS_QUALapprox=|2633|0;AS_VarDP=0|59|0;DP=63;QUALapprox=2633;RAW_GT_COUNT=0,0,1;RAW_MQandDP=179065,63;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:2633,0,2633:0,0,28,31 +chrX 1517113 . A G, 2623.04 . AS_QUALapprox=|2633|0;AS_VarDP=0|59|0;DP=62;QUALapprox=2633;RAW_GT_COUNT=0,0,1;RAW_MQandDP=175465,62;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:2633,0,2633:0,0,28,31 +chrX 1517114 . A . . END=1517117 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1800 +chrX 1517118 . T C, 2690.04 . AS_QUALapprox=|2700|0;AS_VarDP=0|60|0;DP=60;QUALapprox=2700;RAW_GT_COUNT=0,0,1;RAW_MQandDP=167914,60;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:2700,0,2700:0,0,27,33 +chrX 1517119 . G A, 2645.04 . AS_QUALapprox=|2655|0;AS_VarDP=0|59|0;DP=59;QUALapprox=2655;RAW_GT_COUNT=0,0,1;RAW_MQandDP=164314,59;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:2655,0,2655:0,0,26,33 +chrX 1517120 . G . . END=1517121 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1800 +chrX 1517122 . T C, 2645.04 . AS_QUALapprox=|2655|0;AS_VarDP=0|59|0;DP=59;QUALapprox=2655;RAW_GT_COUNT=0,0,1;RAW_MQandDP=164314,59;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:2655,0,2655:0,0,26,33 +chrX 1517123 . T . . END=1517136 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1673 +chrX 1517137 . GCT G,ACT, 2581.04 . AS_QUALapprox=|950|2591|0;AS_VarDP=0|2|51|0;DP=58;QUALapprox=2591;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162465,58;VarDP=53 GT:AD:DP:GQ:PL:SB 2:0,2,51,0:53:99:2591,1641,0,2148:0,0,23,30 +chrX 1517138 . C *,A, 1661.04 . AS_QUALapprox=|0|2501|0;AS_VarDP=0|2|51|0;DP=56;QUALapprox=2501;RAW_GT_COUNT=0,0,1;RAW_MQandDP=155265,56;VarDP=53 GT:AD:DP:GQ:PL:SB 2:0,2,51,0:53:99:2501,1641,0,2103:0,0,23,30 +chrX 1517140 . G . . END=1517157 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1603 +chrX 1517158 . C G, 2894.04 . AS_QUALapprox=|2904|0;AS_VarDP=0|65|0;DP=65;QUALapprox=2904;RAW_GT_COUNT=0,0,1;RAW_MQandDP=188085,65;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,65,0:65:99:2904,0,2904:0,0,33,32 +chrX 1517159 . T . . END=1517164 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1800 +chrX 1517165 . C A, 3057.04 . AS_QUALapprox=|3067|0;AS_VarDP=1|71|0;BaseQRankSum=2.508;DP=73;MQRankSum=0.549;QUALapprox=3067;RAW_GT_COUNT=0,0,1;RAW_MQandDP=215353,73;ReadPosRankSum=1.632;VarDP=72 GT:AD:DP:GQ:PL:SB 1:1,71,0:72:99:3067,0,3076:1,0,36,35 +chrX 1517166 . T . . END=1517861 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,219 +chrX 1517862 . G A, 2029.04 . AS_QUALapprox=|2039|0;AS_VarDP=0|62|0;DP=64;QUALapprox=2039;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230049,64;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:2039,0,2039:0,0,36,26 +chrX 1517863 . C . . END=1517924 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1633 +chrX 1517925 . A G, 1502.04 . AS_QUALapprox=|1512|0;AS_VarDP=4|51|0;BaseQRankSum=1.670;DP=58;MQRankSum=1.267;QUALapprox=1512;RAW_GT_COUNT=0,0,1;RAW_MQandDP=203299,58;ReadPosRankSum=0.503;VarDP=55 GT:AD:DP:GQ:PL:SB 1:4,51,0:55:99:1512,0,1677:3,1,31,20 +chrX 1517926 . T . . END=1517978 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1497 +chrX 1517979 . C T, 1811.04 . AS_QUALapprox=|1821|0;AS_VarDP=0|56|0;DP=59;QUALapprox=1821;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205740,59;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,56,0:56:99:1821,0,1821:0,0,27,29 +chrX 1517980 . G . . END=1518064 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1800 +chrX 1518065 . T C, 1720.04 . AS_QUALapprox=|1730|0;AS_VarDP=0|57|0;DP=60;QUALapprox=1730;RAW_GT_COUNT=0,0,1;RAW_MQandDP=213425,60;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:1730,0,1730:0,0,19,38 +chrX 1518066 . G . . END=1518118 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1722 +chrX 1518119 . TA T, 1708.01 . AS_QUALapprox=|1718|0;AS_VarDP=0|55|0;DP=65;QUALapprox=1718;RAW_GT_COUNT=0,0,1;RAW_MQandDP=233425,65;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:1718,0,1718:0,0,33,22 +chrX 1518121 . A . . END=1518231 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1800 +chrX 1518232 . C T, 2084.04 . AS_QUALapprox=|2094|0;AS_VarDP=1|66|0;BaseQRankSum=-0.500;DP=68;MQRankSum=0.000;QUALapprox=2094;RAW_GT_COUNT=0,0,1;RAW_MQandDP=243700,68;ReadPosRankSum=1.319;VarDP=67 GT:AD:DP:GQ:PL:SB 1:1,66,0:67:99:2094,0,2129:1,0,42,24 +chrX 1518233 . C . . END=1518424 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1641 +chrX 1518425 . C CA, 1402.01 . AS_QUALapprox=|1412|0;AS_VarDP=0|56|0;DP=73;QUALapprox=1412;RAW_GT_COUNT=0,0,1;RAW_MQandDP=256441,73;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,56,0:56:99:1412,0,1412:0,0,22,34 +chrX 1518426 . A . . END=1518556 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1607 +chrX 1518557 . T G, 1598.04 . AS_QUALapprox=|1608|0;AS_VarDP=0|52|0;DP=58;QUALapprox=1608;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:1608,0,1608:0,0,30,22 +chrX 1518558 . T . . END=1520113 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1245 +chrX 1520114 . G A, 1716.04 . AS_QUALapprox=|1726|0;AS_VarDP=0|52|0;DP=55;QUALapprox=1726;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:1726,0,1726:0,0,26,26 +chrX 1520115 . T . . END=1521032 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1215 +chrX 1521033 . TC T, 1585.01 . AS_QUALapprox=|1595|0;AS_VarDP=0|50|0;DP=55;QUALapprox=1595;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180385,55;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,50,0:50:99:1595,0,1595:0,0,28,22 +chrX 1521035 . T . . END=1521477 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,998 +chrX 1521478 . T C, 2137.04 . AS_QUALapprox=|2147|0;AS_VarDP=0|68|0;DP=69;QUALapprox=2147;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,68,0:68:99:2147,0,2147:0,0,41,27 +chrX 1521479 . G . . END=1521679 GT:DP:GQ:MIN_DP:PL 0:73:99:73:0,1800 +chrX 1521680 . G T, 2580.04 . AS_QUALapprox=|2590|0;AS_VarDP=0|76|0;DP=83;QUALapprox=2590;RAW_GT_COUNT=0,0,1;RAW_MQandDP=298800,83;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,76,0:76:99:2590,0,2590:0,0,38,38 +chrX 1521681 . G . . END=1521943 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,927 +chrX 1521944 . C CTTTT,CTTTTTTTT, 722.01 . AS_QUALapprox=|626|732|0;AS_VarDP=0|4|8|0;DP=37;QUALapprox=732;RAW_GT_COUNT=0,0,1;RAW_MQandDP=124501,37;VarDP=12 GT:AD:DP:GQ:PL:SB 2:0,4,8,0:12:99:732,106,0,505:0,0,6,6 +chrX 1521945 . T . . END=1522816 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,154 +chrX 1522817 . G C, 1960.04 . AS_QUALapprox=|1970|0;AS_VarDP=0|60|0;DP=61;QUALapprox=1970;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:1970,0,1970:0,0,31,29 +chrX 1522818 . C . . END=1523047 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1800 +chrX 1523048 . G A, 1906.04 . AS_QUALapprox=|1916|0;AS_VarDP=0|56|0;DP=58;QUALapprox=1916;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,56,0:56:99:1916,0,1916:0,0,19,37 +chrX 1523049 . A . . END=1523077 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1633 +chrX 1523078 . A AAAAT, 1618.01 . AS_QUALapprox=|1628|0;AS_VarDP=0|38|0;DP=64;QUALapprox=1628;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230281,64;VarDP=38 GT:AD:DP:GQ:PL:SB 1:0,38,0:38:99:1628,0,1630:0,0,15,23 +chrX 1523079 . A . . END=1523363 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1665 +chrX 1523364 . G A, 1696.04 . AS_QUALapprox=|1706|0;AS_VarDP=1|54|0;BaseQRankSum=-0.392;DP=57;MQRankSum=0.000;QUALapprox=1706;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;ReadPosRankSum=1.103;VarDP=55 GT:AD:DP:GQ:PL:SB 1:1,54,0:55:99:1706,0,1741:1,0,25,29 +chrX 1523365 . T . . END=1523757 GT:DP:GQ:MIN_DP:PL 0:82:99:82:0,1800 +chrX 1523758 . T C, 2669.04 . AS_QUALapprox=|2679|0;AS_VarDP=0|82|0;DP=83;QUALapprox=2679;RAW_GT_COUNT=0,0,1;RAW_MQandDP=298800,83;VarDP=82 GT:AD:DP:GQ:PL:SB 1:0,82,0:82:99:2679,0,2679:0,0,35,47 +chrX 1523759 . C . . END=1524300 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1692 +chrX 1524301 . C T, 2328.04 . AS_QUALapprox=|2338|0;AS_VarDP=0|69|0;DP=72;QUALapprox=2338;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255809,72;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,69,0:69:99:2338,0,2338:0,0,38,31 +chrX 1524302 . T . . END=1524408 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,889 +chrX 1524409 . G C,GCATC,GCATGCATC, 1122.01 . AS_QUALapprox=|224|530|1132|0;AS_VarDP=0|8|3|27|0;DP=45;QUALapprox=1132;RAW_GT_COUNT=0,0,1;RAW_MQandDP=155950,45;VarDP=38 GT:AD:DP:GQ:PL:SB 3:0,8,3,27,0:38:99:1132,908,602,0,1096:0,0,20,18 +chrX 1524410 . C . . END=1524542 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,435 +chrX 1524543 . A C, 828.04 . AS_QUALapprox=|838|0;AS_VarDP=0|22|0;DP=24;QUALapprox=838;RAW_GT_COUNT=0,0,1;RAW_MQandDP=80032,24;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:838,0,838:0,0,8,14 +chrX 1524544 . T . . END=1524556 GT:DP:GQ:MIN_DP:PL 0:20:99:20:0,496 +chrX 1524557 . GCATC G, 584.01 . AS_QUALapprox=|594|0;AS_VarDP=1|17|0;BaseQRankSum=0.703;DP=22;MQRankSum=-0.488;QUALapprox=594;RAW_GT_COUNT=0,0,1;RAW_MQandDP=63247,22;ReadPosRankSum=0.386;VarDP=18 GT:AD:DP:GQ:PL:SB 1:1,17,0:18:99:594,0,639:1,0,7,10 +chrX 1524562 . C . . END=1524644 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,548 +chrX 1524645 . A ACATCCATGCATC,ACATCCATG,ACATCCATGCATCCATC, 482.01 . AS_QUALapprox=|0|492|52|0;AS_VarDP=1|1|18|1|0;BaseQRankSum=1.932;DP=32;MQRankSum=0.663;QUALapprox=492;RAW_GT_COUNT=0,0,1;RAW_MQandDP=87316,32;ReadPosRankSum=0.744;VarDP=21 GT:AD:DP:GQ:PL:SB 2:1,1,18,1,0:21:99:492,603,0,440,550:1,0,9,11 +chrX 1524646 . C . . END=1524668 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,765 +chrX 1524669 . T C,TCATC,TCATCCATC, 228.01 . AS_QUALapprox=|82|11|238|0;AS_VarDP=0|8|5|5|0;DP=29;QUALapprox=238;RAW_GT_COUNT=0,0,1;RAW_MQandDP=72415,29;VarDP=18 GT:AD:DP:GQ:PL:SB 3:0,8,5,5,0:18:99:238,156,227,0,345:0,0,10,8 +chrX 1524670 . C . . END=1524740 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,389 +chrX 1524741 . GCATCCATC G,CCATCCATC, 1046.01 . AS_QUALapprox=|1056|0|0;AS_VarDP=0|20|1|0;DP=37;QUALapprox=1056;RAW_GT_COUNT=0,0,1;RAW_MQandDP=87709,37;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,20,1,0:21:99:1056,0,1109,1104:0,0,17,4 +chrX 1524750 . C . . END=1524764 GT:DP:GQ:MIN_DP:PL 0:27:25:18:0,25 +chrX 1524765 . C . . END=1524766 GT:DP:GQ:MIN_DP:PL 0:27:14:27:0,14 +chrX 1524767 . A . . END=1524768 GT:DP:GQ:MIN_DP:PL 0:27:35:27:0,35 +chrX 1524769 . C . . END=1524795 GT:DP:GQ:MIN_DP:PL 0:26:0:26:0,0 +chrX 1524796 . T A, 596.04 . AS_QUALapprox=|1099|0;AS_VarDP=0|27|0;DP=30;QUALapprox=1099;RAW_GT_COUNT=0,0,1;RAW_MQandDP=70966,30;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:1099,0,851:0,0,11,3 +chrX 1524797 . C . . END=1524798 GT:DP:GQ:MIN_DP:PL 0:27:35:27:0,35 +chrX 1524799 . A . . END=1524799 GT:DP:GQ:MIN_DP:PL 0:26:0:26:0,0 +chrX 1524800 . T . . END=1524803 GT:DP:GQ:MIN_DP:PL 0:27:25:27:0,25 +chrX 1524804 . C . . END=1524809 GT:DP:GQ:MIN_DP:PL 0:29:0:29:0,0 +chrX 1524810 . C . . END=1524810 GT:DP:GQ:MIN_DP:PL 0:29:64:29:0,64 +chrX 1524811 . A . . END=1524811 GT:DP:GQ:MIN_DP:PL 0:28:0:28:0,0 +chrX 1524812 . T . . END=1524821 GT:DP:GQ:MIN_DP:PL 0:30:43:30:0,43 +chrX 1524822 . C T, 187.04 . AS_QUALapprox=|197|0;AS_VarDP=9|11|0;BaseQRankSum=0.859;DP=36;MQRankSum=2.438;QUALapprox=197;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90867,36;ReadPosRankSum=2.475;VarDP=20 GT:AD:DP:GQ:PL:SB 1:9,11,0:20:99:197,0,356:7,2,9,2 +chrX 1524823 . A . . END=1524825 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,952 +chrX 1524826 . CATCCATCCATCCATCCATCCATCCACTCATCCATTCAACCATCCACTCATCCATCCATCCATCT TATCCATCCATCCATCCATCCATCCACTCATCCATTCAACCATCCACTCATCCATCCATCCATCT,C, 366.01 . AS_QUALapprox=|0|376|0;AS_VarDP=5|3|11|0;BaseQRankSum=1.882;DP=65;MQRankSum=1.493;QUALapprox=376;RAW_GT_COUNT=0,0,1;RAW_MQandDP=195267,65;ReadPosRankSum=2.448;VarDP=19 GT:AD:DP:GQ:PL:SB 2:5,3,11,0:19:99:376,987,0,773:3,2,11,3 +chrX 1524891 . A . . END=1525358 GT:DP:GQ:MIN_DP:PL 0:75:99:75:0,1440 +chrX 1525359 . G A, 1404.04 . AS_QUALapprox=|1414|0;AS_VarDP=0|45|0;DP=48;QUALapprox=1414;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=45 GT:AD:DP:GQ:PL:SB 1:0,45,0:45:99:1414,0,1414:0,0,24,21 +chrX 1525360 . G . . END=1525949 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1181 +chrX 1525950 . A T, 1945.04 . AS_QUALapprox=|1955|0;AS_VarDP=0|61|0;DP=64;QUALapprox=1955;RAW_GT_COUNT=0,0,1;RAW_MQandDP=225946,64;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,61,0:61:99:1955,0,1955:0,0,38,23 +chrX 1525951 . T . . END=1526420 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1423 +chrX 1526421 . T C, 2084.04 . AS_QUALapprox=|2094|0;AS_VarDP=0|47|0;DP=65;QUALapprox=2094;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=47 GT:AD:DP:GQ:PL:SB 1:0,47,0:47:99:2094,0,2094:0,0,23,24 +chrX 1526422 . C . . END=1526442 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1800 +chrX 1526443 . G A, 2169.04 . AS_QUALapprox=|2430|0;AS_VarDP=0|57|0;DP=58;QUALapprox=2430;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:2430,0,2290:0,0,23,24 +chrX 1526444 . C . . END=1526530 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1722 +chrX 1526531 . T G, 1534.04 . AS_QUALapprox=|1544|0;AS_VarDP=0|56|0;DP=58;QUALapprox=1544;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,56,0:56:99:1544,0,1544:0,0,27,29 +chrX 1526532 . G . . END=1528230 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1531 +chrX 1528231 . G A, 2352.04 . AS_QUALapprox=|2362|0;AS_VarDP=0|70|0;DP=72;QUALapprox=2362;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,70,0:70:99:2362,0,2362:0,0,42,28 +chrX 1528232 . G . . END=1529622 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1189 +chrX 1529623 . C T, 1911.04 . AS_QUALapprox=|1921|0;AS_VarDP=0|58|0;DP=59;QUALapprox=1921;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,58,0:58:99:1921,0,1921:0,0,27,31 +chrX 1529624 . C . . END=1529776 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1800 +chrX 1529777 . C T, 2266.04 . AS_QUALapprox=|2276|0;AS_VarDP=0|68|0;DP=69;QUALapprox=2276;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,68,0:68:99:2276,0,2276:0,0,34,34 +chrX 1529778 . T . . END=1529889 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1796 +chrX 1529890 . G A, 2006.04 . AS_QUALapprox=|2016|0;AS_VarDP=0|61|0;DP=63;QUALapprox=2016;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,61,0:61:99:2016,0,2016:0,0,28,33 +chrX 1529891 . A . . END=1530065 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1663 +chrX 1530066 . C T, 1866.04 . AS_QUALapprox=|1876|0;AS_VarDP=0|56|0;DP=57;QUALapprox=1876;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,56,0:56:99:1876,0,1876:0,0,30,26 +chrX 1530067 . T . . END=1530148 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,855 +chrX 1530149 . GTATGTATGATCTATCTATC G, 1949.01 . AS_QUALapprox=|1959|0;AS_VarDP=1|45|0;DP=49;MQRankSum=6.857;QUALapprox=1959;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176281,49;VarDP=46 GT:AD:DP:GQ:PL:SB 1:1,45,0:46:99:1959,0,1974:1,0,28,17 +chrX 1530169 . T . . END=1530202 GT:DP:GQ:MIN_DP:PL 0:47:99:47:0,1215 +chrX 1530203 . T C, 1933.04 . AS_QUALapprox=|1943|0;AS_VarDP=1|49|0;BaseQRankSum=2.222;DP=51;MQRankSum=7.143;QUALapprox=1943;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183481,51;ReadPosRankSum=0.072;VarDP=50 GT:AD:DP:GQ:PL:SB 1:1,49,0:50:99:1943,0,1959:1,0,26,23 +chrX 1530204 . C . . END=1530268 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,1384 +chrX 1530269 . T TTATC, 325.01 . AS_QUALapprox=|335|0;AS_VarDP=15|22|0;BaseQRankSum=-0.588;DP=52;MQRankSum=0.000;QUALapprox=335;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;ReadPosRankSum=0.093;VarDP=37 GT:AD:DP:GQ:PL:SB 1:15,22,0:37:99:335,0,970:6,9,13,9 +chrX 1530270 . T . . END=1530760 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1474 +chrX 1530761 . A G, 2060.04 . AS_QUALapprox=|2070|0;AS_VarDP=0|62|0;DP=66;QUALapprox=2070;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:2070,0,2070:0,0,38,24 +chrX 1530762 . T . . END=1531055 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1718 +chrX 1531056 . G A, 2281.04 . AS_QUALapprox=|2291|0;AS_VarDP=0|73|0;DP=74;QUALapprox=2291;RAW_GT_COUNT=0,0,1;RAW_MQandDP=264400,74;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,73,0:73:99:2291,0,2291:0,0,45,28 +chrX 1531057 . T . . END=1531067 GT:DP:GQ:MIN_DP:PL 0:73:99:73:0,1800 +chrX 1531068 . G GTCTATCTA,GTCTATCTATCTA, 1530.01 . AS_QUALapprox=|1446|1540|0;AS_VarDP=1|23|26|0;BaseQRankSum=-0.420;DP=78;MQRankSum=0.000;QUALapprox=1540;RAW_GT_COUNT=0,0,1;RAW_MQandDP=278800,78;ReadPosRankSum=-0.763;VarDP=50 GT:AD:DP:GQ:PL:SB 2:1,23,26,0:50:94:1540,94,0,1356:0,1,29,20 +chrX 1531069 . T . . END=1532137 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1662 +chrX 1532138 . G A, 1766.04 . AS_QUALapprox=|1776|0;AS_VarDP=0|53|0;DP=55;QUALapprox=1776;RAW_GT_COUNT=0,0,1;RAW_MQandDP=197425,55;VarDP=53 GT:AD:DP:GQ:PL:SB 1:0,53,0:53:99:1776,0,1776:0,0,24,29 +chrX 1532139 . C . . END=1532322 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1657 +chrX 1532323 . C CAT, 2882.01 . AS_QUALapprox=|2892|0;AS_VarDP=0|67|0;DP=69;QUALapprox=2892;RAW_GT_COUNT=0,0,1;RAW_MQandDP=245284,69;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,67,0:67:99:2892,0,2893:0,0,38,29 +chrX 1532324 . G . . END=1532369 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1800 +chrX 1532370 . C T, 2056.04 . AS_QUALapprox=|2066|0;AS_VarDP=0|62|0;DP=67;QUALapprox=2066;RAW_GT_COUNT=0,0,1;RAW_MQandDP=224548,67;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:2066,0,2066:0,0,35,27 +chrX 1532371 . G . . END=1532452 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1468 +chrX 1532453 . GTATATATACACATATA G, 1971.01 . AS_QUALapprox=|1981|0;AS_VarDP=0|48|0;DP=51;QUALapprox=1981;RAW_GT_COUNT=0,0,1;RAW_MQandDP=166914,51;VarDP=48 GT:AD:DP:GQ:PL:SB 1:0,48,0:48:99:1981,0,1981:0,0,26,22 +chrX 1532470 . T . . END=1532470 GT:DP:GQ:MIN_DP:PL 0:47:99:47:0,1534 +chrX 1532471 . GTATAGATGTATATGTGTA G, 1970.01 . AS_QUALapprox=|1980|0;AS_VarDP=0|48|0;DP=48;QUALapprox=1980;RAW_GT_COUNT=0,0,1;RAW_MQandDP=156114,48;VarDP=48 GT:AD:DP:GQ:PL:SB 1:0,48,0:48:99:1980,0,1980:0,0,26,22 +chrX 1532490 . T . . END=1532790 GT:DP:GQ:MIN_DP:PL 0:75:99:75:0,1003 +chrX 1532791 . G C, 2268.04 . AS_QUALapprox=|2278|0;AS_VarDP=0|69|0;DP=69;QUALapprox=2278;RAW_GT_COUNT=0,0,1;RAW_MQandDP=247609,69;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,69,0:69:99:2278,0,2278:0,0,28,41 +chrX 1532792 . G . . END=1532932 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1563 +chrX 1532933 . A G, 1542.04 . AS_QUALapprox=|1552|0;AS_VarDP=0|47|0;DP=48;QUALapprox=1552;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=47 GT:AD:DP:GQ:PL:SB 1:0,47,0:47:99:1552,0,1552:0,0,27,20 +chrX 1532934 . A . . END=1532996 GT:DP:GQ:MIN_DP:PL 0:39:99:39:0,720 +chrX 1532997 . T C, 763.04 . AS_QUALapprox=|773|0;AS_VarDP=0|24|0;DP=28;QUALapprox=773;RAW_GT_COUNT=0,0,1;RAW_MQandDP=99904,28;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:773,0,773:0,0,16,8 +chrX 1532998 . G . . END=1533001 GT:DP:GQ:MIN_DP:PL 0:22:99:22:0,585 +chrX 1533002 . CAAA C, 278.01 . AS_QUALapprox=|288|0;AS_VarDP=10|13|0;DP=51;MQRankSum=0.317;QUALapprox=288;RAW_GT_COUNT=0,0,1;RAW_MQandDP=170010,51;VarDP=23 GT:AD:DP:GQ:PL:SB 1:10,13,0:23:99:288,0,509:0,10,12,1 +chrX 1533006 . A . . END=1533124 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1614 +chrX 1533125 . C T, 1750.04 . AS_QUALapprox=|1760|0;AS_VarDP=0|53|0;DP=55;QUALapprox=1760;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=53 GT:AD:DP:GQ:PL:SB 1:0,53,0:53:99:1760,0,1760:0,0,29,24 +chrX 1533126 . G . . END=1533212 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1716 +chrX 1533213 . G C, 1795.04 . AS_QUALapprox=|1805|0;AS_VarDP=0|54|0;DP=55;QUALapprox=1805;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=54 GT:AD:DP:GQ:PL:SB 1:0,54,0:54:99:1805,0,1805:0,0,28,26 +chrX 1533214 . T . . END=1533565 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,238 +chrX 1533566 . AT A, 2923.01 . AS_QUALapprox=|2933|0;AS_VarDP=0|74|0;DP=74;QUALapprox=2933;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,74,0:74:99:2933,0,2933:0,0,33,41 +chrX 1533568 . T . . END=1533568 GT:DP:GQ:MIN_DP:PL 0:74:99:74:0,1800 +chrX 1533569 . ATTTAAATATATTATATACTTATATATTTATT A, 2895.01 . AS_QUALapprox=|2905|0;AS_VarDP=7|74|0;DP=82;MQRankSum=0.000;QUALapprox=2905;RAW_GT_COUNT=0,0,1;RAW_MQandDP=295200,82;VarDP=81 GT:AD:DP:GQ:PL:SB 1:7,74,0:81:99:2905,0,2933:5,2,33,41 +chrX 1533601 . A . . END=1533802 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,540 +chrX 1533803 . T C, 1409.04 . AS_QUALapprox=|1419|0;AS_VarDP=1|45|0;BaseQRankSum=2.144;DP=49;MQRankSum=0.000;QUALapprox=1419;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;ReadPosRankSum=0.339;VarDP=46 GT:AD:DP:GQ:PL:SB 1:1,45,0:46:99:1419,0,1428:0,1,25,20 +chrX 1533804 . A . . END=1534174 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1449 +chrX 1534175 . A G, 2714.04 . AS_QUALapprox=|2724|0;AS_VarDP=1|91|0;BaseQRankSum=1.761;DP=97;MQRankSum=0.000;QUALapprox=2724;RAW_GT_COUNT=0,0,1;RAW_MQandDP=349200,97;ReadPosRankSum=-0.490;VarDP=92 GT:AD:DP:GQ:PL:SB 1:1,91,0:92:99:2724,0,2733:0,1,42,49 +chrX 1534176 . T . . END=1535183 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1170 +chrX 1535184 . C CTTT,CTTTTT, 1058.01 . AS_QUALapprox=|1068|811|0;AS_VarDP=0|11|4|0;DP=48;QUALapprox=1068;RAW_GT_COUNT=0,0,1;RAW_MQandDP=160800,48;VarDP=15 GT:AD:DP:GQ:PL:SB 1:0,11,4,0:15:99:1068,0,257,696:0,0,6,9 +chrX 1535185 . T . . END=1535725 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,655 +chrX 1535726 . CAG C, 1171.01 . AS_QUALapprox=|1181|0;AS_VarDP=0|28|0;DP=42;QUALapprox=1181;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151200,42;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:1181,0,1183:0,0,15,13 +chrX 1535729 . A . . END=1537515 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1454 +chrX 1537516 . C G, 2148.04 . AS_QUALapprox=|2158|0;AS_VarDP=1|67|0;BaseQRankSum=1.799;DP=74;MQRankSum=0.000;QUALapprox=2158;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;ReadPosRankSum=0.739;VarDP=68 GT:AD:DP:GQ:PL:SB 1:1,67,0:68:99:2158,0,2183:0,1,35,32 +chrX 1537517 . A . . END=1537817 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1577 +chrX 1537818 . A G, 2029.04 . AS_QUALapprox=|2039|0;AS_VarDP=0|61|0;DP=62;QUALapprox=2039;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,61,0:61:99:2039,0,2039:0,0,25,36 +chrX 1537819 . T . . END=1537953 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1800 +chrX 1537954 . T C, 2085.04 . AS_QUALapprox=|2095|0;AS_VarDP=0|65|0;DP=65;QUALapprox=2095;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,65,0:65:99:2095,0,2095:0,0,33,32 +chrX 1537955 . G . . END=1538071 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1774 +chrX 1538072 . A G, 1984.04 . AS_QUALapprox=|1994|0;AS_VarDP=0|62|0;DP=64;QUALapprox=1994;RAW_GT_COUNT=0,0,1;RAW_MQandDP=228400,64;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:1994,0,1994:0,0,31,31 +chrX 1538073 . C . . END=1538170 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1289 +chrX 1538171 . C CAAACAAACAAACAAACAAAG, 2697.01 . AS_QUALapprox=|2707|0;AS_VarDP=0|62|0;DP=66;QUALapprox=2707;RAW_GT_COUNT=0,0,1;RAW_MQandDP=228636,66;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:2707,0,2708:0,0,33,29 +chrX 1538172 . A . . END=1538188 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1607 +chrX 1538189 . T G, 2389.04 . AS_QUALapprox=|2399|0;AS_VarDP=0|59|0;DP=62;QUALapprox=2399;RAW_GT_COUNT=0,0,1;RAW_MQandDP=213999,62;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:2399,0,2399:0,0,32,27 +chrX 1538190 . G . . END=1538319 GT:DP:GQ:MIN_DP:PL 0:75:99:75:0,1582 +chrX 1538320 . A G, 2491.04 . AS_QUALapprox=|2501|0;AS_VarDP=0|57|0;DP=60;QUALapprox=2501;RAW_GT_COUNT=0,0,1;RAW_MQandDP=214426,60;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:2501,0,2501:0,0,30,27 +chrX 1538321 . T . . END=1538330 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1752 +chrX 1538331 . T G, 2594.04 . AS_QUALapprox=|2604|0;AS_VarDP=0|60|0;DP=60;QUALapprox=2604;RAW_GT_COUNT=0,0,1;RAW_MQandDP=214426,60;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:2604,0,2604:0,0,34,26 +chrX 1538332 . G . . END=1538437 GT:DP:GQ:MIN_DP:PL 0:46:99:46:0,1067 +chrX 1538438 . A G, 812.04 . AS_QUALapprox=|822|0;AS_VarDP=0|28|0;DP=28;QUALapprox=822;RAW_GT_COUNT=0,0,1;RAW_MQandDP=98881,28;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:822,0,822:0,0,18,10 +chrX 1538439 . A . . END=1538455 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,709 +chrX 1538456 . C CAAA, 1202.01 . AS_QUALapprox=|1212|0;AS_VarDP=0|31|0;DP=39;QUALapprox=1212;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140400,39;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1212,0,1212:0,0,13,18 +chrX 1538457 . A . . END=1538618 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,1273 +chrX 1538619 . G A, 1469.04 . AS_QUALapprox=|1479|0;AS_VarDP=2|45|0;BaseQRankSum=3.668;DP=53;MQRankSum=4.849;QUALapprox=1479;RAW_GT_COUNT=0,0,1;RAW_MQandDP=188800,53;ReadPosRankSum=-0.765;VarDP=47 GT:AD:DP:GQ:PL:SB 1:2,45,0:47:99:1479,0,1513:0,2,23,22 +chrX 1538620 . T . . END=1538676 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,1490 +chrX 1538677 . A G, 1627.04 . AS_QUALapprox=|1637|0;AS_VarDP=0|50|0;DP=51;QUALapprox=1637;RAW_GT_COUNT=0,0,1;RAW_MQandDP=181600,51;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,50,0:50:99:1637,0,1637:0,0,28,22 +chrX 1538678 . G . . END=1538736 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,1350 +chrX 1538737 . G A, 1602.04 . AS_QUALapprox=|1612|0;AS_VarDP=0|43|0;DP=46;QUALapprox=1612;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162916,46;VarDP=43 GT:AD:DP:GQ:PL:SB 1:0,43,0:43:99:1612,0,1612:0,0,29,14 +chrX 1538738 . T . . END=1538748 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,968 +chrX 1538749 . C CA, 1283.01 . AS_QUALapprox=|1293|0;AS_VarDP=0|37|0;DP=47;QUALapprox=1293;RAW_GT_COUNT=0,0,1;RAW_MQandDP=163541,47;VarDP=37 GT:AD:DP:GQ:PL:SB 1:0,37,0:37:99:1293,0,1294:0,0,24,13 +chrX 1538750 . A . . END=1538842 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,1035 +chrX 1538843 . C G, 1849.04 . AS_QUALapprox=|1859|0;AS_VarDP=0|58|0;DP=62;QUALapprox=1859;RAW_GT_COUNT=0,0,1;RAW_MQandDP=222201,62;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,58,0:58:99:1859,0,1859:0,0,27,31 +chrX 1538844 . A . . END=1538983 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1598 +chrX 1538984 . G A, 1496.04 . AS_QUALapprox=|1506|0;AS_VarDP=1|44|0;BaseQRankSum=4.851;DP=45;MQRankSum=0.000;QUALapprox=1506;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162000,45;ReadPosRankSum=-1.656;VarDP=45 GT:AD:DP:GQ:PL:SB 1:1,44,0:45:99:1506,0,1516:0,1,20,24 +chrX 1538985 . A . . END=1539035 GT:DP:GQ:MIN_DP:PL 0:43:99:43:0,1236 +chrX 1539036 . G C, 1357.04 . AS_QUALapprox=|1367|0;AS_VarDP=0|44|0;DP=45;QUALapprox=1367;RAW_GT_COUNT=0,0,1;RAW_MQandDP=160000,45;VarDP=44 GT:AD:DP:GQ:PL:SB 1:0,44,0:44:99:1367,0,1367:0,0,22,22 +chrX 1539037 . A . . END=1539049 GT:DP:GQ:MIN_DP:PL 0:41:99:41:0,1105 +chrX 1539050 . C A,CAA, 1084.01 . AS_QUALapprox=|0|1094|0;AS_VarDP=0|3|29|0;DP=56;QUALapprox=1094;RAW_GT_COUNT=0,0,1;RAW_MQandDP=191876,56;VarDP=32 GT:AD:DP:GQ:PL:SB 2:0,3,29,0:32:99:1094,1117,0,1125:0,0,20,12 +chrX 1539051 . A . . END=1539448 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1084 +chrX 1539449 . A C, 1572.04 . AS_QUALapprox=|1582|0;AS_VarDP=0|49|0;DP=54;QUALapprox=1582;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=49 GT:AD:DP:GQ:PL:SB 1:0,49,0:49:99:1582,0,1582:0,0,24,25 +chrX 1539450 . A . . END=1539481 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,1638 +chrX 1539482 . G C, 1850.04 . AS_QUALapprox=|1860|0;AS_VarDP=0|58|0;DP=60;QUALapprox=1860;RAW_GT_COUNT=0,0,1;RAW_MQandDP=213241,60;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,58,0:58:99:1860,0,1860:0,0,24,34 +chrX 1539483 . A . . END=1539538 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1701 +chrX 1539539 . C A, 1859.04 . AS_QUALapprox=|1869|0;AS_VarDP=0|57|0;DP=57;QUALapprox=1869;RAW_GT_COUNT=0,0,1;RAW_MQandDP=202441,57;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:1869,0,1869:0,0,27,30 +chrX 1539540 . C . . END=1540049 GT:DP:GQ:MIN_DP:PL 0:76:99:76:0,1671 +chrX 1540050 . G T, 1999.04 . AS_QUALapprox=|2009|0;AS_VarDP=1|61|0;BaseQRankSum=2.928;DP=65;MQRankSum=0.000;QUALapprox=2009;RAW_GT_COUNT=0,0,1;RAW_MQandDP=232000,65;ReadPosRankSum=0.419;VarDP=62 GT:AD:DP:GQ:PL:SB 1:1,61,0:62:99:2009,0,2018:1,0,30,31 +chrX 1540051 . C . . END=1540218 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1331 +chrX 1540219 . C CA, 928.01 . AS_QUALapprox=|938|0;AS_VarDP=0|39|0;DP=54;QUALapprox=938;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=39 GT:AD:DP:GQ:PL:SB 1:0,39,0:39:99:938,0,938:0,0,18,21 +chrX 1540220 . A . . END=1540656 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,163 +chrX 1540657 . C T, 2175.04 . AS_QUALapprox=|2185|0;AS_VarDP=0|59|0;DP=59;QUALapprox=2185;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:2185,0,2185:0,0,29,30 +chrX 1540658 . A . . END=1540733 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,1425 +chrX 1540734 . T C, 1434.04 . AS_QUALapprox=|1444|0;AS_VarDP=0|44|0;DP=45;QUALapprox=1444;RAW_GT_COUNT=0,0,1;RAW_MQandDP=161425,45;VarDP=44 GT:AD:DP:GQ:PL:SB 1:0,44,0:44:99:1444,0,1444:0,0,25,19 +chrX 1540735 . G . . END=1540818 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,540 +chrX 1540819 . CAAAAAA C, 365.01 . AS_QUALapprox=|375|0;AS_VarDP=3|10|0;DP=41;MQRankSum=-0.365;QUALapprox=375;RAW_GT_COUNT=0,0,1;RAW_MQandDP=143025,41;VarDP=13 GT:AD:DP:GQ:PL:SB 1:3,10,0:13:99:375,0,452:0,3,8,2 +chrX 1540826 . A . . END=1541076 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1132 +chrX 1541077 . C A, 2377.04 . AS_QUALapprox=|2387|0;AS_VarDP=0|71|0;DP=76;QUALapprox=2387;RAW_GT_COUNT=0,0,1;RAW_MQandDP=273600,76;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,71,0:71:99:2387,0,2387:0,0,38,33 +chrX 1541078 . G . . END=1541200 GT:DP:GQ:MIN_DP:PL 0:81:99:81:0,1800 +chrX 1541201 . G T, 2416.04 . AS_QUALapprox=|2426|0;AS_VarDP=1|77|0;BaseQRankSum=2.208;DP=85;MQRankSum=0.000;QUALapprox=2426;RAW_GT_COUNT=0,0,1;RAW_MQandDP=306000,85;ReadPosRankSum=-0.311;VarDP=78 GT:AD:DP:GQ:PL:SB 1:1,77,0:78:99:2426,0,2435:0,1,38,39 +chrX 1541202 . A . . END=1541224 GT:DP:GQ:MIN_DP:PL 0:77:99:77:0,1800 +chrX 1541225 . G C, 3528.04 . AS_QUALapprox=|3538|0;AS_VarDP=0|80|0;DP=81;QUALapprox=3538;RAW_GT_COUNT=0,0,1;RAW_MQandDP=291600,81;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,80,0:80:99:3538,0,3538:0,0,39,41 +chrX 1541226 . C . . END=1541229 GT:DP:GQ:MIN_DP:PL 0:79:99:79:0,1800 +chrX 1541230 . C G, 3497.04 . AS_QUALapprox=|3507|0;AS_VarDP=0|79|0;DP=80;QUALapprox=3507;RAW_GT_COUNT=0,0,1;RAW_MQandDP=288000,80;VarDP=79 GT:AD:DP:GQ:PL:SB 1:0,79,0:79:99:3507,0,3507:0,0,39,40 +chrX 1541231 . G . . END=1541277 GT:DP:GQ:MIN_DP:PL 0:74:99:74:0,1800 +chrX 1541278 . G A, 2303.04 . AS_QUALapprox=|2313|0;AS_VarDP=0|70|0;DP=74;QUALapprox=2313;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,70,0:70:99:2313,0,2313:0,0,30,40 +chrX 1541279 . C . . END=1541375 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1800 +chrX 1541376 . A G, 2355.04 . AS_QUALapprox=|2365|0;AS_VarDP=0|73|0;DP=74;QUALapprox=2365;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,73,0:73:99:2365,0,2365:0,0,28,45 +chrX 1541377 . T . . END=1541532 GT:DP:GQ:MIN_DP:PL 0:79:99:79:0,1800 +chrX 1541533 . C T, 2009.04 . AS_QUALapprox=|2019|0;AS_VarDP=0|62|0;DP=63;QUALapprox=2019;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:2019,0,2019:0,0,37,25 +chrX 1541534 . G . . END=1541899 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1468 +chrX 1541900 . A G, 1538.04 . AS_QUALapprox=|1548|0;AS_VarDP=2|48|0;BaseQRankSum=3.087;DP=51;MQRankSum=-0.301;QUALapprox=1548;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180129,51;ReadPosRankSum=1.114;VarDP=50 GT:AD:DP:GQ:PL:SB 1:2,48,0:50:99:1548,0,1598:1,1,17,31 +chrX 1541901 . A . . END=1541933 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,1439 +chrX 1541934 . T C, 1558.04 . AS_QUALapprox=|1568|0;AS_VarDP=1|50|0;BaseQRankSum=-0.507;DP=54;MQRankSum=-0.101;QUALapprox=1568;RAW_GT_COUNT=0,0,1;RAW_MQandDP=192929,54;ReadPosRankSum=-1.665;VarDP=51 GT:AD:DP:GQ:PL:SB 1:1,50,0:51:99:1568,0,1603:0,1,22,28 +chrX 1541935 . G . . END=1543417 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1325 +chrX 1543418 . G A, 2085.04 . AS_QUALapprox=|2095|0;AS_VarDP=0|62|0;DP=65;QUALapprox=2095;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:2095,0,2095:0,0,31,31 +chrX 1543419 . A . . END=1543609 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1706 +chrX 1543610 . T A, 1616.04 . AS_QUALapprox=|1626|0;AS_VarDP=0|50|0;DP=57;QUALapprox=1626;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,50,0:50:99:1626,0,1626:0,0,29,21 +chrX 1543611 . C . . END=1543632 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1688 +chrX 1543633 . A G, 1901.04 . AS_QUALapprox=|1911|0;AS_VarDP=0|58|0;DP=60;QUALapprox=1911;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,58,0:58:99:1911,0,1911:0,0,34,24 +chrX 1543634 . A . . END=1543884 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1436 +chrX 1543885 . G C, 1320.04 . AS_QUALapprox=|1330|0;AS_VarDP=0|41|0;DP=43;QUALapprox=1330;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154800,43;VarDP=41 GT:AD:DP:GQ:PL:SB 1:0,41,0:41:99:1330,0,1330:0,0,23,18 +chrX 1543886 . C . . END=1543976 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,1165 +chrX 1543977 . C G, 1793.04 . AS_QUALapprox=|1803|0;AS_VarDP=0|58|0;DP=59;QUALapprox=1803;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,58,0:58:99:1803,0,1803:0,0,29,29 +chrX 1543978 . A . . END=1544027 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1800 +chrX 1544028 . C T, 1931.04 . AS_QUALapprox=|1941|0;AS_VarDP=0|58|0;DP=59;QUALapprox=1941;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,58,0:58:99:1941,0,1941:0,0,32,26 +chrX 1544029 . G . . END=1544123 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1796 +chrX 1544124 . C G, 1944.04 . AS_QUALapprox=|1954|0;AS_VarDP=0|61|0;DP=63;QUALapprox=1954;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,61,0:61:99:1954,0,1954:0,0,26,35 +chrX 1544125 . A . . END=1544199 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1587 +chrX 1544200 . A ATTTT, 1859.01 . AS_QUALapprox=|1869|0;AS_VarDP=0|43|0;DP=58;QUALapprox=1869;RAW_GT_COUNT=0,0,1;RAW_MQandDP=204905,58;VarDP=43 GT:AD:DP:GQ:PL:SB 1:0,43,0:43:99:1869,0,1870:0,0,16,27 +chrX 1544201 . T . . END=1544316 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,1272 +chrX 1544317 . C T, 1792.04 . AS_QUALapprox=|1802|0;AS_VarDP=0|53|0;DP=54;QUALapprox=1802;RAW_GT_COUNT=0,0,1;RAW_MQandDP=193825,54;VarDP=53 GT:AD:DP:GQ:PL:SB 1:0,53,0:53:99:1802,0,1802:0,0,33,20 +chrX 1544318 . C . . END=1544721 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1633 +chrX 1544722 . A T, 2314.04 . AS_QUALapprox=|2324|0;AS_VarDP=0|68|0;DP=69;QUALapprox=2324;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,68,0:68:99:2324,0,2324:0,0,39,29 +chrX 1544723 . C . . END=1544753 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1800 +chrX 1544754 . A G, 2078.04 . AS_QUALapprox=|2088|0;AS_VarDP=0|67|0;DP=69;QUALapprox=2088;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,67,0:67:99:2088,0,2088:0,0,41,26 +chrX 1544755 . T . . END=1544982 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1300 +chrX 1544983 . CA C, 239.01 . AS_QUALapprox=|249|0;AS_VarDP=2|15|0;BaseQRankSum=-0.645;DP=51;MQRankSum=-0.183;QUALapprox=249;RAW_GT_COUNT=0,0,1;RAW_MQandDP=179239,51;ReadPosRankSum=-0.218;VarDP=17 GT:AD:DP:GQ:PL:SB 1:2,15,0:17:99:249,0,278:1,1,10,5 +chrX 1544985 . A . . END=1545057 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,1305 +chrX 1545058 . T C, 2112.04 . AS_QUALapprox=|2122|0;AS_VarDP=0|68|0;DP=69;QUALapprox=2122;RAW_GT_COUNT=0,0,1;RAW_MQandDP=245779,69;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,68,0:68:99:2122,0,2122:0,0,38,30 +chrX 1545059 . G . . END=1545200 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,846 +chrX 1545201 . C CAA, 1016.01 . AS_QUALapprox=|1026|0;AS_VarDP=0|35|0;DP=59;QUALapprox=1026;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205610,59;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,35,0:35:99:1026,0,1027:0,0,9,26 +chrX 1545202 . A . . END=1545410 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1577 +chrX 1545411 . A G, 1718.04 . AS_QUALapprox=|1728|0;AS_VarDP=0|52|0;DP=52;QUALapprox=1728;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:1728,0,1728:0,0,27,25 +chrX 1545412 . A . . END=1545498 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1609 +chrX 1545499 . A T, 2232.04 . AS_QUALapprox=|2242|0;AS_VarDP=0|66|0;DP=69;QUALapprox=2242;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=66 GT:AD:DP:GQ:PL:SB 1:0,66,0:66:99:2242,0,2242:0,0,37,29 +chrX 1545500 . A . . END=1545603 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1800 +chrX 1545604 . A G, 2994.04 . AS_QUALapprox=|3004|0;AS_VarDP=0|70|0;DP=71;QUALapprox=3004;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,70,0:70:99:3004,0,3004:0,0,40,30 +chrX 1545605 . G . . END=1545619 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1800 +chrX 1545620 . C A, 3072.04 . AS_QUALapprox=|3082|0;AS_VarDP=0|73|0;DP=73;QUALapprox=3082;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,73,0:73:99:3082,0,3082:0,0,42,31 +chrX 1545621 . T . . END=1545776 GT:DP:GQ:MIN_DP:PL 0:77:99:77:0,1800 +chrX 1545777 . A AT, 2848.01 . AS_QUALapprox=|2858|0;AS_VarDP=0|80|0;DP=85;QUALapprox=2858;RAW_GT_COUNT=0,0,1;RAW_MQandDP=306000,85;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,80,0:80:99:2858,0,2859:0,0,43,37 +chrX 1545778 . T . . END=1545872 GT:DP:GQ:MIN_DP:PL 0:87:99:87:0,1800 +chrX 1545873 . A G, 2605.04 . AS_QUALapprox=|2615|0;AS_VarDP=0|85|0;DP=91;QUALapprox=2615;RAW_GT_COUNT=0,0,1;RAW_MQandDP=327600,91;VarDP=85 GT:AD:DP:GQ:PL:SB 1:0,85,0:85:99:2615,0,2615:0,0,39,46 +chrX 1545874 . A . . END=1547490 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,1063 +chrX 1547491 . G T, 2076.04 . AS_QUALapprox=|2086|0;AS_VarDP=2|64|0;BaseQRankSum=1.684;DP=67;MQRankSum=0.000;QUALapprox=2086;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;ReadPosRankSum=-1.066;VarDP=66 GT:AD:DP:GQ:PL:SB 1:2,64,0:66:99:2086,0,2131:1,1,35,29 +chrX 1547492 . C . . END=1548306 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1454 +chrX 1548307 . C T, 1661.04 . AS_QUALapprox=|1671|0;AS_VarDP=0|53|0;DP=56;QUALapprox=1671;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=53 GT:AD:DP:GQ:PL:SB 1:0,53,0:53:99:1671,0,1671:0,0,30,23 +chrX 1548308 . G . . END=1548587 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1357 +chrX 1548588 . C G, 1871.04 . AS_QUALapprox=|1881|0;AS_VarDP=0|57|0;DP=62;QUALapprox=1881;RAW_GT_COUNT=0,0,1;RAW_MQandDP=217774,62;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:1881,0,1881:0,0,28,29 +chrX 1548589 . C . . END=1548845 GT:DP:GQ:MIN_DP:PL 0:75:99:75:0,855 +chrX 1548846 . A AC, 3004.01 . AS_QUALapprox=|3014|0;AS_VarDP=0|71|0;DP=73;QUALapprox=3014;RAW_GT_COUNT=0,0,1;RAW_MQandDP=258116,73;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,71,0:71:99:3014,0,3014:0,0,30,41 +chrX 1548847 . A ACACACAC,ACACACACACAC, 3046.01 . AS_QUALapprox=|1128|3056|0;AS_VarDP=0|1|47|0;DP=74;QUALapprox=3056;RAW_GT_COUNT=0,0,1;RAW_MQandDP=261716,74;VarDP=48 GT:AD:DP:GQ:PL:SB 2:0,1,47,0:48:99:3056,1928,0,2516:0,0,19,29 +chrX 1548848 . A . . END=1548862 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1800 +chrX 1548863 . A C, 2674.04 . AS_QUALapprox=|2684|0;AS_VarDP=0|60|0;DP=60;QUALapprox=2684;RAW_GT_COUNT=0,0,1;RAW_MQandDP=211316,60;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:2684,0,2684:0,0,24,36 +chrX 1548864 . A . . END=1548864 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1800 +chrX 1548865 . A C, 2674.04 . AS_QUALapprox=|2684|0;AS_VarDP=0|60|0;DP=60;QUALapprox=2684;RAW_GT_COUNT=0,0,1;RAW_MQandDP=211316,60;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:2684,0,2684:0,0,24,36 +chrX 1548866 . A . . END=1548866 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1800 +chrX 1548867 . A C, 2617.04 . AS_QUALapprox=|2627|0;AS_VarDP=0|59|0;DP=59;QUALapprox=2627;RAW_GT_COUNT=0,0,1;RAW_MQandDP=207716,59;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:2627,0,2627:0,0,24,35 +chrX 1548868 . A . . END=1548868 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1800 +chrX 1548869 . A C, 2572.04 . AS_QUALapprox=|2582|0;AS_VarDP=0|58|0;DP=58;QUALapprox=2582;RAW_GT_COUNT=0,0,1;RAW_MQandDP=204116,58;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,58,0:58:99:2582,0,2582:0,0,24,34 +chrX 1548870 . A . . END=1550021 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,945 +chrX 1550022 . CA C,AA, 879.04 . AS_QUALapprox=|27|889|0;AS_VarDP=2|0|25|0;BaseQRankSum=2.036;DP=47;MQRankSum=-0.306;QUALapprox=889;RAW_GT_COUNT=0,0,1;RAW_MQandDP=161113,47;ReadPosRankSum=-0.185;VarDP=27 GT:AD:DP:GQ:PL:SB 2:2,0,25,0:27:99:889,862,0,902:0,2,12,13 +chrX 1550023 . A *,C,AC, 821.92 . AS_QUALapprox=|0|834|301|0;AS_VarDP=2|0|19|1|0;BaseQRankSum=1.191;DP=47;MQRankSum=-0.158;QUALapprox=834;RAW_GT_COUNT=0,0,1;RAW_MQandDP=161113,47;ReadPosRankSum=-0.057;VarDP=22 GT:AD:DP:GQ:PL:SB 2:2,0,19,1,0:22:99:834,806,0,533,734:0,2,12,8 +chrX 1550024 . A . . END=1550389 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1454 +chrX 1550390 . A G, 1798.04 . AS_QUALapprox=|1808|0;AS_VarDP=0|55|0;DP=59;QUALapprox=1808;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:1808,0,1808:0,0,25,30 +chrX 1550391 . G . . END=1550509 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1619 +chrX 1550510 . C T, 2030.04 . AS_QUALapprox=|2040|0;AS_VarDP=0|63|0;DP=66;QUALapprox=2040;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,63,0:63:99:2040,0,2040:0,0,28,35 +chrX 1550511 . C . . END=1550850 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1384 +chrX 1550851 . CG C, 1606.01 . AS_QUALapprox=|1616|0;AS_VarDP=1|47|0;BaseQRankSum=-0.758;DP=54;MQRankSum=0.000;QUALapprox=1616;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;ReadPosRankSum=-0.506;VarDP=48 GT:AD:DP:GQ:PL:SB 1:1,47,0:48:99:1616,0,1652:1,0,25,22 +chrX 1550853 . G . . END=1550942 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1483 +chrX 1550943 . C T, 1617.04 . AS_QUALapprox=|1627|0;AS_VarDP=0|51|0;DP=55;QUALapprox=1627;RAW_GT_COUNT=0,0,1;RAW_MQandDP=196516,55;VarDP=51 GT:AD:DP:GQ:PL:SB 1:0,51,0:51:99:1627,0,1627:0,0,23,28 +chrX 1550944 . G . . END=1550972 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1687 +chrX 1550973 . C T, 2417.04 . AS_QUALapprox=|2427|0;AS_VarDP=0|57|0;DP=59;QUALapprox=2427;RAW_GT_COUNT=0,0,1;RAW_MQandDP=210916,59;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:2427,0,2427:0,0,25,32 +chrX 1550974 . G . . END=1550994 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,1640 +chrX 1550995 . A G, 2625.04 . AS_QUALapprox=|2635|0;AS_VarDP=0|59|0;DP=59;QUALapprox=2635;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:2635,0,2635:0,0,28,31 +chrX 1550996 . A . . END=1551000 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1800 +chrX 1551001 . G A, 2775.04 . AS_QUALapprox=|2785|0;AS_VarDP=0|63|0;DP=63;QUALapprox=2785;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,63,0:63:99:2785,0,2785:0,0,34,29 +chrX 1551002 . A . . END=1551004 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1800 +chrX 1551005 . GA G, 2550.01 . AS_QUALapprox=|2560|0;AS_VarDP=0|58|0;DP=61;QUALapprox=2560;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,58,0:58:99:2560,0,2560:0,0,33,25 +chrX 1551007 . A . . END=1551988 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,692 +chrX 1551989 . AAGAG A, 1496.01 . AS_QUALapprox=|1506|0;AS_VarDP=1|36|0;BaseQRankSum=-0.261;DP=40;MQRankSum=0.000;QUALapprox=1506;RAW_GT_COUNT=0,0,1;RAW_MQandDP=144000,40;ReadPosRankSum=-1.406;VarDP=37 GT:AD:DP:GQ:PL:SB 1:1,36,0:37:99:1506,0,1608:1,0,26,10 +chrX 1551994 . A . . END=1553147 GT:DP:GQ:MIN_DP:PL 0:59:47:48:0,47 +chrX 1553148 . T C, 0.26 . AS_QUALapprox=|8|0;AS_VarDP=30|34|0;BaseQRankSum=-3.350;DP=64;MQRankSum=0.000;QUALapprox=8;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;ReadPosRankSum=-1.386;VarDP=64 GT:AD:DP:GQ:PL:SB 1:30,34,0:64:8:8,0,1031:15,15,18,16 +chrX 1553149 . G . . END=1553192 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1668 +chrX 1553193 . C G, 1771.04 . AS_QUALapprox=|1781|0;AS_VarDP=0|54|0;DP=55;QUALapprox=1781;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=54 GT:AD:DP:GQ:PL:SB 1:0,54,0:54:99:1781,0,1781:0,0,26,28 +chrX 1553194 . A . . END=1553204 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,1663 +chrX 1553205 . G A, 1722.04 . AS_QUALapprox=|1732|0;AS_VarDP=0|52|0;DP=54;QUALapprox=1732;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:1732,0,1732:0,0,25,27 +chrX 1553206 . A . . END=1554081 GT:DP:GQ:MIN_DP:PL 0:65:94:65:0,94 +chrX 1554082 . CA C, 0.11 . AS_QUALapprox=|7|0;AS_VarDP=23|23|0;BaseQRankSum=-1.034;DP=53;MQRankSum=0.031;QUALapprox=7;RAW_GT_COUNT=0,0,1;RAW_MQandDP=189650,53;ReadPosRankSum=0.714;VarDP=46 GT:AD:DP:GQ:PL:SB 1:23,23,0:46:7:7,0,716:16,7,14,9 +chrX 1554084 . A . . END=1555540 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,224 +chrX 1555541 . C T, 1925.04 . AS_QUALapprox=|1935|0;AS_VarDP=0|60|0;DP=63;QUALapprox=1935;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:1935,0,1935:0,0,29,31 +chrX 1555542 . A . . END=1555827 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1693 +chrX 1555828 . C G, 69.04 . AS_QUALapprox=|79|0;AS_VarDP=24|33|0;BaseQRankSum=1.434;DP=60;MQRankSum=0.000;QUALapprox=79;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;ReadPosRankSum=-0.032;VarDP=57 GT:AD:DP:GQ:PL:SB 1:24,33,0:57:79:79,0,1087:11,13,17,16 +chrX 1555829 . G . . END=1555898 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,253 +chrX 1555899 . C T, 79.04 . AS_QUALapprox=|89|0;AS_VarDP=32|34|0;BaseQRankSum=0.814;DP=66;MQRankSum=0.062;QUALapprox=89;RAW_GT_COUNT=0,0,1;RAW_MQandDP=231674,66;ReadPosRankSum=-0.491;VarDP=66 GT:AD:DP:GQ:PL:SB 1:32,34,0:66:89:89,0,1529:17,15,18,16 +chrX 1555900 . G . . END=1555900 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1800 +chrX 1555901 . C T, 79.04 . AS_QUALapprox=|89|0;AS_VarDP=32|34|0;BaseQRankSum=1.741;DP=66;MQRankSum=0.062;QUALapprox=89;RAW_GT_COUNT=0,0,1;RAW_MQandDP=231674,66;ReadPosRankSum=-0.244;VarDP=66 GT:AD:DP:GQ:PL:SB 1:32,34,0:66:89:89,0,1529:17,15,18,16 +chrX 1555902 . G . . END=1555930 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,154 +chrX 1555931 . T A, 3020.04 . AS_QUALapprox=|3030|0;AS_VarDP=1|69|0;BaseQRankSum=2.964;DP=70;MQRankSum=4.245;QUALapprox=3030;RAW_GT_COUNT=0,0,1;RAW_MQandDP=246074,70;ReadPosRankSum=1.680;VarDP=70 GT:AD:DP:GQ:PL:SB 1:1,69,0:70:99:3030,0,3040:0,1,37,32 +chrX 1555932 . G . . END=1555939 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1800 +chrX 1555940 . G A, 2770.04 . AS_QUALapprox=|2780|0;AS_VarDP=0|62|0;DP=62;QUALapprox=2780;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219625,62;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:2780,0,2780:0,0,31,31 +chrX 1555941 . A . . END=1555944 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1800 +chrX 1555945 . G A, 2864.04 . AS_QUALapprox=|2874|0;AS_VarDP=0|65|0;DP=65;QUALapprox=2874;RAW_GT_COUNT=0,0,1;RAW_MQandDP=229850,65;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,65,0:65:99:2874,0,2874:0,0,33,32 +chrX 1555946 . G . . END=1556356 GT:DP:GQ:MIN_DP:PL 0:64:30:62:0,30 +chrX 1556357 . T A, 50.04 . AS_QUALapprox=|60|0;AS_VarDP=21|23|0;BaseQRankSum=-0.910;DP=47;MQRankSum=-0.910;QUALapprox=60;RAW_GT_COUNT=0,0,1;RAW_MQandDP=168625,47;ReadPosRankSum=0.705;VarDP=44 GT:AD:DP:GQ:PL:SB 1:21,23,0:44:60:60,0,789:9,12,9,14 +chrX 1556358 . C . . END=1556656 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1350 +chrX 1556657 . T C, 1830.04 . AS_QUALapprox=|1840|0;AS_VarDP=0|55|0;DP=60;QUALapprox=1840;RAW_GT_COUNT=0,0,1;RAW_MQandDP=215104,60;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:1840,0,1840:0,0,29,26 +chrX 1556658 . A . . END=1556696 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1663 +chrX 1556697 . C G, 336.04 . AS_QUALapprox=|346|0;AS_VarDP=27|34|0;BaseQRankSum=2.758;DP=64;MQRankSum=1.155;QUALapprox=346;RAW_GT_COUNT=0,0,1;RAW_MQandDP=227504,64;ReadPosRankSum=0.886;VarDP=61 GT:AD:DP:GQ:PL:SB 1:27,34,0:61:99:346,0,1530:14,13,21,13 +chrX 1556698 . G . . END=1556700 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1800 +chrX 1556701 . C G, 395.04 . AS_QUALapprox=|405|0;AS_VarDP=25|34|0;BaseQRankSum=0.148;DP=62;MQRankSum=1.200;QUALapprox=405;RAW_GT_COUNT=0,0,1;RAW_MQandDP=220304,62;ReadPosRankSum=0.169;VarDP=59 GT:AD:DP:GQ:PL:SB 1:25,34,0:59:99:405,0,1530:13,12,21,13 +chrX 1556702 . T . . END=1556794 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1794 +chrX 1556795 . G C, 1771.04 . AS_QUALapprox=|1781|0;AS_VarDP=0|56|0;DP=60;QUALapprox=1781;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,56,0:56:99:1781,0,1781:0,0,32,24 +chrX 1556796 . T . . END=1556834 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1522 +chrX 1556835 . A ATT, 196.01 . AS_QUALapprox=|206|0;AS_VarDP=17|25|0;BaseQRankSum=0.348;DP=57;MQRankSum=0.278;QUALapprox=206;RAW_GT_COUNT=0,0,1;RAW_MQandDP=202625,57;ReadPosRankSum=0.026;VarDP=42 GT:AD:DP:GQ:PL:SB 1:17,25,0:42:99:206,0,786:9,8,13,12 +chrX 1556836 . T . . END=1556979 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1319 +chrX 1556980 . T C, 2137.04 . AS_QUALapprox=|2147|0;AS_VarDP=0|65|0;DP=70;QUALapprox=2147;RAW_GT_COUNT=0,0,1;RAW_MQandDP=249275,70;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,65,0:65:99:2147,0,2147:0,0,28,37 +chrX 1556981 . C . . END=1557110 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1800 +chrX 1557111 . T G, 128.04 . AS_QUALapprox=|138|0;AS_VarDP=30|35|0;BaseQRankSum=0.425;DP=66;MQRankSum=0.627;QUALapprox=138;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230548,66;ReadPosRankSum=0.408;VarDP=65 GT:AD:DP:GQ:PL:SB 1:30,35,0:65:99:138,0,1111:14,16,17,18 +chrX 1557112 . A . . END=1557385 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1473 +chrX 1557386 . T C, 2206.04 . AS_QUALapprox=|2216|0;AS_VarDP=0|68|0;DP=72;QUALapprox=2216;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,68,0:68:99:2216,0,2216:0,0,40,28 +chrX 1557387 . T . . END=1557650 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1688 +chrX 1557651 . TATCCATCC T,TATCC, 1006.01 . AS_QUALapprox=|1016|655|0;AS_VarDP=0|23|15|0;DP=50;QUALapprox=1016;RAW_GT_COUNT=0,0,1;RAW_MQandDP=178000,50;VarDP=38 GT:AD:DP:GQ:PL:SB 1:0,23,15,0:38:99:1016,0,361,1026:0,0,16,22 +chrX 1557660 . A . . END=1557723 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1733 +chrX 1557724 . T TTATC, 2263.01 . AS_QUALapprox=|2273|0;AS_VarDP=0|51|0;DP=60;QUALapprox=2273;RAW_GT_COUNT=0,0,1;RAW_MQandDP=215425,60;VarDP=51 GT:AD:DP:GQ:PL:SB 1:0,51,0:51:99:2273,0,2274:0,0,28,23 +chrX 1557725 . T . . END=1557762 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1800 +chrX 1557763 . C CATCT, 451.01 . AS_QUALapprox=|461|0;AS_VarDP=21|32|0;BaseQRankSum=-0.997;DP=62;MQRankSum=1.273;QUALapprox=461;RAW_GT_COUNT=0,0,1;RAW_MQandDP=222625,62;ReadPosRankSum=0.346;VarDP=53 GT:AD:DP:GQ:PL:SB 1:21,32,0:53:99:461,0,1406:14,7,18,14 +chrX 1557764 . A . . END=1557828 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,246 +chrX 1557829 . GTATC G, 265.04 . AS_QUALapprox=|1162|0;AS_VarDP=3|28|0;DP=56;QUALapprox=1162;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=31 GT:AD:DP:GQ:PL:SB 1:3,28,0:31:99:1162,0,1201:0,0,13,15 +chrX 1557834 . T . . END=1557896 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1170 +chrX 1557897 . A . . END=1557900 GT:DP:GQ:MIN_DP:PL 0:62:0:62:0,0 +chrX 1557901 . A . . END=1558158 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,207 +chrX 1558159 . TCTAC T, 655.01 . AS_QUALapprox=|665|0;AS_VarDP=18|33|0;BaseQRankSum=-1.238;DP=61;MQRankSum=-0.698;QUALapprox=665;RAW_GT_COUNT=0,0,1;RAW_MQandDP=217600,61;ReadPosRankSum=0.099;VarDP=51 GT:AD:DP:GQ:PL:SB 1:18,33,0:51:99:665,0,1475:8,10,17,16 +chrX 1558164 . C . . END=1558212 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1394 +chrX 1558213 . AATCT A,AATCTATCTATCT, 1195.01 . AS_QUALapprox=|408|1205|0;AS_VarDP=0|14|27|0;DP=57;QUALapprox=1205;RAW_GT_COUNT=0,0,1;RAW_MQandDP=203121,57;VarDP=41 GT:AD:DP:GQ:PL:SB 2:0,14,27,0:41:99:1205,797,0,1294:0,0,22,19 +chrX 1558218 . A . . END=1558612 GT:DP:GQ:MIN_DP:PL 0:52:98:52:0,98 +chrX 1558613 . GTATC G, 265.01 . AS_QUALapprox=|275|0;AS_VarDP=25|32|0;BaseQRankSum=-0.828;DP=62;MQRankSum=0.000;QUALapprox=275;RAW_GT_COUNT=0,0,1;RAW_MQandDP=222201,62;ReadPosRankSum=-0.193;VarDP=57 GT:AD:DP:GQ:PL:SB 1:25,32,0:57:99:275,0,1400:13,12,15,17 +chrX 1558618 . T . . END=1558653 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1800 +chrX 1558654 . A AATCTATCTATCTATCTATCT, 2633.01 . AS_QUALapprox=|2643|0;AS_VarDP=0|60|0;DP=72;QUALapprox=2643;RAW_GT_COUNT=0,0,1;RAW_MQandDP=256201,72;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:2643,0,2646:0,0,30,30 +chrX 1558655 . A . . END=1559745 GT:DP:GQ:MIN_DP:PL 0:68:94:68:0,94 +chrX 1559746 . A G, 1952.04 . AS_QUALapprox=|1962|0;AS_VarDP=1|62|0;BaseQRankSum=2.174;DP=67;MQRankSum=-0.091;QUALapprox=1962;RAW_GT_COUNT=0,0,1;RAW_MQandDP=236133,67;ReadPosRankSum=-0.495;VarDP=63 GT:AD:DP:GQ:PL:SB 1:1,62,0:63:99:1962,0,1972:1,0,29,33 +chrX 1559747 . G . . END=1559782 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1800 +chrX 1559783 . T C, 2169.04 . AS_QUALapprox=|2179|0;AS_VarDP=0|69|0;DP=75;QUALapprox=2179;RAW_GT_COUNT=0,0,1;RAW_MQandDP=264933,75;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,69,0:69:99:2179,0,2179:0,0,35,34 +chrX 1559784 . G . . END=1559819 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1800 +chrX 1559820 . T C, 2417.04 . AS_QUALapprox=|2427|0;AS_VarDP=0|73|0;DP=77;QUALapprox=2427;RAW_GT_COUNT=0,0,1;RAW_MQandDP=276849,77;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,73,0:73:99:2427,0,2427:0,0,37,36 +chrX 1559821 . G . . END=1560252 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1800 +chrX 1560253 . A T, 2098.04 . AS_QUALapprox=|2108|0;AS_VarDP=0|66|0;DP=67;QUALapprox=2108;RAW_GT_COUNT=0,0,1;RAW_MQandDP=238050,67;VarDP=66 GT:AD:DP:GQ:PL:SB 1:0,66,0:66:99:2108,0,2108:0,0,27,39 +chrX 1560254 . C . . END=1560316 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1434 +chrX 1560317 . A G, 1473.04 . AS_QUALapprox=|1483|0;AS_VarDP=0|45|0;DP=48;QUALapprox=1483;RAW_GT_COUNT=0,0,1;RAW_MQandDP=164067,48;VarDP=45 GT:AD:DP:GQ:PL:SB 1:0,45,0:45:99:1483,0,1483:0,0,19,26 +chrX 1560318 . A . . END=1560954 GT:DP:GQ:MIN_DP:PL 0:42:99:42:0,635 +chrX 1560955 . A G, 84.04 . AS_QUALapprox=|94|0;AS_VarDP=23|26|0;BaseQRankSum=-0.149;DP=52;MQRankSum=0.000;QUALapprox=94;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;ReadPosRankSum=0.090;VarDP=49 GT:AD:DP:GQ:PL:SB 1:23,26,0:49:94:94,0,854:18,5,8,18 +chrX 1560956 . T . . END=1561201 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,185 +chrX 1561202 . T TCTCC, 207.01 . AS_QUALapprox=|217|0;AS_VarDP=15|21|0;BaseQRankSum=-2.618;DP=43;MQRankSum=0.000;QUALapprox=217;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154800,43;ReadPosRankSum=0.177;VarDP=36 GT:AD:DP:GQ:PL:SB 1:15,21,0:36:99:217,0,862:4,11,12,9 +chrX 1561203 . C . . END=1561435 GT:DP:GQ:MIN_DP:PL 0:39:99:39:0,139 +chrX 1561436 . T . . END=1561436 GT:DP:GQ:MIN_DP:PL 0:58:0:58:0,0 +chrX 1561437 . C . . END=1561687 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1755 +chrX 1561688 . T C, 418.04 . AS_QUALapprox=|428|0;AS_VarDP=32|42|0;BaseQRankSum=2.183;DP=74;MQRankSum=1.173;QUALapprox=428;RAW_GT_COUNT=0,0,1;RAW_MQandDP=265825,74;ReadPosRankSum=0.486;VarDP=74 GT:AD:DP:GQ:PL:SB 1:32,42,0:74:99:428,0,1429:15,17,20,22 +chrX 1561689 . A . . END=1561716 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1800 +chrX 1561717 . G A, 118.04 . AS_QUALapprox=|128|0;AS_VarDP=32|38|0;BaseQRankSum=-0.477;DP=73;MQRankSum=0.000;QUALapprox=128;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262225,73;ReadPosRankSum=1.345;VarDP=70 GT:AD:DP:GQ:PL:SB 1:32,38,0:70:99:128,0,1190:12,20,19,19 +chrX 1561718 . T . . END=1562197 GT:DP:GQ:MIN_DP:PL 0:75:99:75:0,188 +chrX 1562198 . A G, 184.04 . AS_QUALapprox=|194|0;AS_VarDP=37|44|0;BaseQRankSum=-0.925;DP=84;MQRankSum=0.000;QUALapprox=194;RAW_GT_COUNT=0,0,1;RAW_MQandDP=302400,84;ReadPosRankSum=-0.806;VarDP=81 GT:AD:DP:GQ:PL:SB 1:37,44,0:81:99:194,0,1404:18,19,16,28 +chrX 1562199 . G . . END=1562208 GT:DP:GQ:MIN_DP:PL 0:81:99:81:0,1800 +chrX 1562209 . T C, 229.04 . AS_QUALapprox=|239|0;AS_VarDP=37|44|0;BaseQRankSum=0.574;DP=83;MQRankSum=0.000;QUALapprox=239;RAW_GT_COUNT=0,0,1;RAW_MQandDP=298800,83;ReadPosRankSum=-0.133;VarDP=81 GT:AD:DP:GQ:PL:SB 1:37,44,0:81:99:239,0,1449:17,20,17,27 +chrX 1562210 . C . . END=1562269 GT:DP:GQ:MIN_DP:PL 0:76:99:76:0,1800 +chrX 1562270 . C T, 488.04 . AS_QUALapprox=|498|0;AS_VarDP=32|46|0;BaseQRankSum=1.031;DP=79;MQRankSum=-0.808;QUALapprox=498;RAW_GT_COUNT=0,0,1;RAW_MQandDP=283825,79;ReadPosRankSum=0.239;VarDP=78 GT:AD:DP:GQ:PL:SB 1:32,46,0:78:99:498,0,1539:14,18,19,27 +chrX 1562271 . G . . END=1562280 GT:DP:GQ:MIN_DP:PL 0:77:99:77:0,1800 +chrX 1562281 . TA T, 408.01 . AS_QUALapprox=|418|0;AS_VarDP=32|45|0;BaseQRankSum=-2.278;DP=79;MQRankSum=-0.817;QUALapprox=418;RAW_GT_COUNT=0,0,1;RAW_MQandDP=283825,79;ReadPosRankSum=-0.032;VarDP=77 GT:AD:DP:GQ:PL:SB 1:32,45,0:77:99:418,0,1400:15,17,20,25 +chrX 1562283 . A . . END=1562371 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1800 +chrX 1562372 . A G, 23.04 . AS_QUALapprox=|33|0;AS_VarDP=27|31|0;BaseQRankSum=-2.077;DP=61;MQRankSum=-1.307;QUALapprox=33;RAW_GT_COUNT=0,0,1;RAW_MQandDP=217025,61;ReadPosRankSum=-0.250;VarDP=58 GT:AD:DP:GQ:PL:SB 1:27,31,0:58:33:33,0,907:10,17,17,14 +chrX 1562373 . G . . END=1563076 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,501 +chrX 1563077 . A AAAAGAAAG,AAAGAAAG,AAAAGAAAGAAAG,AAAGAAAGAAAG, 918.01 . AS_QUALapprox=|928|416|314|737|0;AS_VarDP=1|17|0|0|11|0;BaseQRankSum=2.495;DP=52;MQRankSum=-0.226;QUALapprox=928;RAW_GT_COUNT=0,0,1;RAW_MQandDP=178270,52;ReadPosRankSum=1.618;VarDP=29 GT:AD:DP:GQ:PL:SB 1:1,17,0,0,11,0:29:99:928,0,512,614,191,868:0,1,22,6 +chrX 1563078 . A . . END=1563502 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1089 +chrX 1563503 . AAAAAAAAAAAAAG A, 96.01 . AS_QUALapprox=|106|0;AS_VarDP=27|31|0;BaseQRankSum=1.777;DP=70;MQRankSum=1.207;QUALapprox=106;RAW_GT_COUNT=0,0,1;RAW_MQandDP=246170,70;ReadPosRankSum=-1.986;VarDP=58 GT:AD:DP:GQ:PL:SB 1:27,31,0:58:99:106,0,1300:10,17,12,19 +chrX 1563517 . A . . END=1563615 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1800 +chrX 1563616 . T C, 169.04 . AS_QUALapprox=|179|0;AS_VarDP=31|36|0;BaseQRankSum=-0.130;DP=70;MQRankSum=0.000;QUALapprox=179;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;ReadPosRankSum=0.943;VarDP=67 GT:AD:DP:GQ:PL:SB 1:31,36,0:67:99:179,0,1211:20,11,24,12 +chrX 1563617 . G . . END=1564014 GT:DP:GQ:MIN_DP:PL 0:76:99:76:0,1800 +chrX 1564015 . C CT, 905.01 . AS_QUALapprox=|915|0;AS_VarDP=1|45|0;BaseQRankSum=-0.635;DP=63;MQRankSum=0.000;QUALapprox=915;RAW_GT_COUNT=0,0,1;RAW_MQandDP=224800,63;ReadPosRankSum=-1.130;VarDP=46 GT:AD:DP:GQ:PL:SB 1:1,45,0:46:99:915,0,938:1,0,21,24 +chrX 1564016 . T . . END=1564528 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1284 +chrX 1564529 . A C, 3178.04 . AS_QUALapprox=|3188|0;AS_VarDP=0|72|0;DP=72;QUALapprox=3188;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,72,0:72:99:3188,0,3188:0,0,30,42 +chrX 1564530 . A . . END=1564533 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1800 +chrX 1564534 . C A, 3144.04 . AS_QUALapprox=|3154|0;AS_VarDP=0|71|0;DP=71;QUALapprox=3154;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,71,0:71:99:3154,0,3154:0,0,30,41 +chrX 1564535 . C . . END=1564695 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1800 +chrX 1564696 . G T, 1851.04 . AS_QUALapprox=|1861|0;AS_VarDP=1|57|0;BaseQRankSum=2.705;DP=62;MQRankSum=0.000;QUALapprox=1861;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;ReadPosRankSum=1.195;VarDP=58 GT:AD:DP:GQ:PL:SB 1:1,57,0:58:99:1861,0,1870:1,0,30,27 +chrX 1564697 . C . . END=1564717 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1775 +chrX 1564718 . G C, 1776.04 . AS_QUALapprox=|1786|0;AS_VarDP=0|56|0;DP=58;QUALapprox=1786;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,56,0:56:99:1786,0,1786:0,0,27,29 +chrX 1564719 . A . . END=1565177 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1310 +chrX 1565178 . T C, 2206.04 . AS_QUALapprox=|2216|0;AS_VarDP=0|69|0;DP=73;QUALapprox=2216;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,69,0:69:99:2216,0,2216:0,0,45,24 +chrX 1565179 . G . . END=1565413 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1800 +chrX 1565414 . T G, 410.04 . AS_QUALapprox=|420|0;AS_VarDP=28|43|0;BaseQRankSum=-2.724;DP=71;MQRankSum=0.000;QUALapprox=420;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;ReadPosRankSum=-0.883;VarDP=71 GT:AD:DP:GQ:PL:SB 1:28,43,0:71:99:420,0,1393:19,9,16,27 +chrX 1565415 . T . . END=1565480 GT:DP:GQ:MIN_DP:PL 0:75:99:75:0,1800 +chrX 1565481 . T C, 2474.04 . AS_QUALapprox=|2484|0;AS_VarDP=0|79|0;DP=81;QUALapprox=2484;RAW_GT_COUNT=0,0,1;RAW_MQandDP=291600,81;VarDP=79 GT:AD:DP:GQ:PL:SB 1:0,79,0:79:99:2484,0,2484:0,0,36,43 +chrX 1565482 . C . . END=1565602 GT:DP:GQ:MIN_DP:PL 0:83:99:83:0,1800 +chrX 1565603 . GT G, 1745.01 . AS_QUALapprox=|1755|0;AS_VarDP=2|65|0;BaseQRankSum=2.513;DP=78;MQRankSum=3.290;QUALapprox=1755;RAW_GT_COUNT=0,0,1;RAW_MQandDP=277139,78;ReadPosRankSum=0.811;VarDP=67 GT:AD:DP:GQ:PL:SB 1:2,65,0:67:99:1755,0,1808:1,1,32,33 +chrX 1565605 . T . . END=1565922 GT:DP:GQ:MIN_DP:PL 0:73:99:73:0,481 +chrX 1565923 . G GTTTTTTTTTCCCCCAAAAGGGGACCTAGGCGTGGTGGTACAAAACAC, 3348.01 . AS_QUALapprox=|3358|0;AS_VarDP=0|76|0;DP=81;QUALapprox=3358;RAW_GT_COUNT=0,0,1;RAW_MQandDP=285821,81;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,76,0:76:99:3358,0,3361:0,0,39,37 +chrX 1565924 . T . . END=1566006 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1404 +chrX 1566007 . C T, 2014.04 . AS_QUALapprox=|2024|0;AS_VarDP=0|61|0;DP=61;QUALapprox=2024;RAW_GT_COUNT=0,0,1;RAW_MQandDP=215762,61;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,61,0:61:99:2024,0,2024:0,0,33,28 +chrX 1566008 . G . . END=1566093 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1681 +chrX 1566094 . GAA G, 1884.01 . AS_QUALapprox=|1894|0;AS_VarDP=0|52|0;DP=62;QUALapprox=1894;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:1894,0,1894:0,0,25,27 +chrX 1566097 . A . . END=1566332 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1686 +chrX 1566333 . A T, 2135.04 . AS_QUALapprox=|2145|0;AS_VarDP=0|65|0;DP=65;QUALapprox=2145;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,65,0:65:99:2145,0,2145:0,0,37,28 +chrX 1566334 . A . . END=1566626 GT:DP:GQ:MIN_DP:PL 0:79:99:79:0,1800 +chrX 1566627 . A G, 2596.04 . AS_QUALapprox=|2606|0;AS_VarDP=0|77|0;DP=78;QUALapprox=2606;RAW_GT_COUNT=0,0,1;RAW_MQandDP=280800,78;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,77,0:77:99:2606,0,2606:0,0,42,35 +chrX 1566628 . T . . END=1566745 GT:DP:GQ:MIN_DP:PL 0:81:99:81:0,1800 +chrX 1566746 . G C, 2555.04 . AS_QUALapprox=|2565|0;AS_VarDP=0|79|0;DP=82;QUALapprox=2565;RAW_GT_COUNT=0,0,1;RAW_MQandDP=295200,82;VarDP=79 GT:AD:DP:GQ:PL:SB 1:0,79,0:79:99:2565,0,2565:0,0,41,38 +chrX 1566747 . T . . END=1566807 GT:DP:GQ:MIN_DP:PL 0:82:99:82:0,1800 +chrX 1566808 . C T, 2708.04 . AS_QUALapprox=|2718|0;AS_VarDP=0|81|0;DP=83;QUALapprox=2718;RAW_GT_COUNT=0,0,1;RAW_MQandDP=298800,83;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,81,0:81:99:2718,0,2718:0,0,44,37 +chrX 1566809 . A . . END=1567067 GT:DP:GQ:MIN_DP:PL 0:87:99:87:0,1800 +chrX 1567068 . A G, 2430.04 . AS_QUALapprox=|2440|0;AS_VarDP=1|79|0;BaseQRankSum=-0.505;DP=81;MQRankSum=0.000;QUALapprox=2440;RAW_GT_COUNT=0,0,1;RAW_MQandDP=291600,81;ReadPosRankSum=-0.412;VarDP=80 GT:AD:DP:GQ:PL:SB 1:1,79,0:80:99:2440,0,2474:1,0,30,49 +chrX 1567069 . T . . END=1567145 GT:DP:GQ:MIN_DP:PL 0:79:99:79:0,1800 +chrX 1567146 . T C, 2879.04 . AS_QUALapprox=|2889|0;AS_VarDP=2|69|0;BaseQRankSum=1.612;DP=72;MQRankSum=0.000;QUALapprox=2889;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;ReadPosRankSum=-0.358;VarDP=71 GT:AD:DP:GQ:PL:SB 1:2,69,0:71:99:2889,0,2959:1,1,30,39 +chrX 1567147 . G . . END=1567155 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1800 +chrX 1567156 . A C, 2884.04 . AS_QUALapprox=|2894|0;AS_VarDP=1|68|0;BaseQRankSum=-0.656;DP=69;MQRankSum=0.000;QUALapprox=2894;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;ReadPosRankSum=-1.503;VarDP=69 GT:AD:DP:GQ:PL:SB 1:1,68,0:69:99:2894,0,2939:0,1,29,39 +chrX 1567157 . T . . END=1567193 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1800 +chrX 1567194 . GTATATA G, 2440.01 . AS_QUALapprox=|2450|0;AS_VarDP=0|55|0;DP=67;QUALapprox=2450;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:2450,0,2450:0,0,25,30 +chrX 1567201 . T . . END=1567381 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1613 +chrX 1567382 . GATATA G, 2863.01 . AS_QUALapprox=|2873|0;AS_VarDP=0|65|0;DP=71;QUALapprox=2873;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,65,0:65:99:2873,0,2873:0,0,26,39 +chrX 1567388 . A . . END=1567778 GT:DP:GQ:MIN_DP:PL 0:59:21:49:0,21 +chrX 1567779 . T G, 117.04 . AS_QUALapprox=|127|0;AS_VarDP=23|26|0;BaseQRankSum=1.436;DP=50;MQRankSum=0.000;QUALapprox=127;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;ReadPosRankSum=0.375;VarDP=49 GT:AD:DP:GQ:PL:SB 1:23,26,0:49:99:127,0,1099:12,11,12,14 +chrX 1567780 . T . . END=1568281 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,382 +chrX 1568282 . C CA, 142.01 . AS_QUALapprox=|152|0;AS_VarDP=23|28|0;BaseQRankSum=-1.428;DP=59;MQRankSum=0.169;QUALapprox=152;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208134,59;ReadPosRankSum=0.076;VarDP=51 GT:AD:DP:GQ:PL:SB 1:23,28,0:51:99:152,0,870:9,14,15,13 +chrX 1568283 . A . . END=1568447 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,984 +chrX 1568448 . A G, 218.04 . AS_QUALapprox=|228|0;AS_VarDP=20|27|0;BaseQRankSum=-2.208;DP=47;MQRankSum=0.000;QUALapprox=228;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;ReadPosRankSum=-2.411;VarDP=47 GT:AD:DP:GQ:PL:SB 1:20,27,0:47:99:228,0,1128:8,12,11,16 +chrX 1568449 . A . . END=1568449 GT:DP:GQ:MIN_DP:PL 0:46:99:46:0,1395 +chrX 1568450 . AAAAAAAAAAAATAT A, 188.01 . AS_QUALapprox=|198|0;AS_VarDP=22|29|0;BaseQRankSum=-1.193;DP=51;MQRankSum=0.000;QUALapprox=198;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;ReadPosRankSum=-2.251;VarDP=51 GT:AD:DP:GQ:PL:SB 1:22,29,0:51:99:198,0,1188:9,13,12,17 +chrX 1568465 . A . . END=1568470 GT:DP:GQ:MIN_DP:PL 0:46:0:46:0,0 +chrX 1568471 . A . . END=1568521 GT:DP:GQ:MIN_DP:PL 0:47:39:44:0,39 +chrX 1568522 . A ATGTATATATGTATATGTG, 481.01 . AS_QUALapprox=|491|0;AS_VarDP=14|25|0;BaseQRankSum=-0.203;DP=53;MQRankSum=0.000;QUALapprox=491;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;ReadPosRankSum=0.557;VarDP=39 GT:AD:DP:GQ:PL:SB 1:14,25,0:39:99:491,0,1125:7,7,9,16 +chrX 1568523 . T . . END=1568639 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,154 +chrX 1568640 . C A, 109.04 . AS_QUALapprox=|119|0;AS_VarDP=30|35|0;BaseQRankSum=-0.770;DP=68;MQRankSum=0.000;QUALapprox=119;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;ReadPosRankSum=1.330;VarDP=65 GT:AD:DP:GQ:PL:SB 1:30,35,0:65:99:119,0,1090:15,15,18,17 +chrX 1568641 . A . . END=1568877 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,447 +chrX 1568878 . G . . END=1568878 GT:DP:GQ:MIN_DP:PL 0:54:19:54:0,19 +chrX 1568879 . C . . END=1569012 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1703 +chrX 1569013 . T C, 76.04 . AS_QUALapprox=|86|0;AS_VarDP=26|31|0;BaseQRankSum=-1.775;DP=57;MQRankSum=1.127;QUALapprox=86;RAW_GT_COUNT=0,0,1;RAW_MQandDP=203200,57;ReadPosRankSum=-2.212;VarDP=57 GT:AD:DP:GQ:PL:SB 1:26,31,0:57:86:86,0,945:16,10,16,15 +chrX 1569014 . C . . END=1569149 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,143 +chrX 1569150 . G A, 2115.04 . AS_QUALapprox=|2125|0;AS_VarDP=0|56|0;DP=62;QUALapprox=2125;RAW_GT_COUNT=0,0,1;RAW_MQandDP=221625,62;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,56,0:56:99:2125,0,2235:0,0,32,23 +chrX 1569151 . T . . END=1569335 GT:DP:GQ:MIN_DP:PL 0:59:30:57:0,30 +chrX 1569336 . G C, 1866.04 . AS_QUALapprox=|1876|0;AS_VarDP=0|57|0;DP=60;QUALapprox=1876;RAW_GT_COUNT=0,0,1;RAW_MQandDP=211078,60;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:1876,0,1876:0,0,25,32 +chrX 1569337 . C . . END=1569432 GT:DP:GQ:MIN_DP:PL 0:53:80:53:0,80 +chrX 1569433 . G A, 229.04 . AS_QUALapprox=|239|0;AS_VarDP=22|28|0;BaseQRankSum=0.858;DP=53;MQRankSum=-3.065;QUALapprox=239;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176488,53;ReadPosRankSum=-1.294;VarDP=50 GT:AD:DP:GQ:PL:SB 1:22,28,0:50:99:239,0,1188:8,14,18,10 +chrX 1569434 . T . . END=1569443 GT:DP:GQ:MIN_DP:PL 0:47:99:47:0,510 +chrX 1569444 . A AT, 57.01 . AS_QUALapprox=|67|0;AS_VarDP=24|26|0;BaseQRankSum=0.317;DP=50;MQRankSum=-3.443;QUALapprox=67;RAW_GT_COUNT=0,0,1;RAW_MQandDP=167172,50;ReadPosRankSum=1.444;VarDP=50 GT:AD:DP:GQ:PL:SB 1:24,26,0:50:67:67,0,975:9,15,14,5 +chrX 1569445 . A *,AAT,AATAATAATAAT, 56.01 . AS_QUALapprox=|0|0|66|0;AS_VarDP=24|0|0|18|0;BaseQRankSum=-0.745;DP=50;MQRankSum=-3.545;QUALapprox=66;RAW_GT_COUNT=0,0,1;RAW_MQandDP=167172,50;ReadPosRankSum=1.551;VarDP=42 GT:AD:DP:GQ:PL:SB 3:24,0,0,18,0:42:66:66,831,797,0,834:9,15,13,5 +chrX 1569446 . A . . END=1569450 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,1122 +chrX 1569451 . A T,AATAATAAT,AAATAATAATAATAAT,AATAATAATAATAATAAT,AAATAATAATAATAATAATAATAAT, 1132.04 . AS_QUALapprox=|1142|812|161|409|239|0;AS_VarDP=0|19|11|0|0|0|0;DP=58;QUALapprox=1142;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194355,58;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,19,11,0,0,0,0:30:99:1142,0,330,981,733,903,1116:0,0,19,11 +chrX 1569452 . A . . END=1569502 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1662 +chrX 1569503 . C T, 186.04 . AS_QUALapprox=|196|0;AS_VarDP=27|34|0;BaseQRankSum=-1.379;DP=61;MQRankSum=-2.045;QUALapprox=196;RAW_GT_COUNT=0,0,1;RAW_MQandDP=211858,61;ReadPosRankSum=-0.414;VarDP=61 GT:AD:DP:GQ:PL:SB 1:27,34,0:61:99:196,0,1090:17,10,17,17 +chrX 1569504 . A . . END=1569944 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1716 +chrX 1569945 . G A, 2193.04 . AS_QUALapprox=|2203|0;AS_VarDP=0|68|0;DP=71;QUALapprox=2203;RAW_GT_COUNT=0,0,1;RAW_MQandDP=254809,71;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,68,0:68:99:2203,0,2203:0,0,38,30 +chrX 1569946 . T . . END=1570635 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1293 +chrX 1570636 . G A, 2852.04 . AS_QUALapprox=|2862|0;AS_VarDP=1|85|0;BaseQRankSum=3.265;DP=89;MQRankSum=0.000;QUALapprox=2862;RAW_GT_COUNT=0,0,1;RAW_MQandDP=319825,89;ReadPosRankSum=-0.604;VarDP=86 GT:AD:DP:GQ:PL:SB 1:1,85,0:86:99:2862,0,2871:0,1,45,40 +chrX 1570637 . G . . END=1570901 GT:DP:GQ:MIN_DP:PL 0:86:99:86:0,1800 +chrX 1570902 . C T, 2191.04 . AS_QUALapprox=|2201|0;AS_VarDP=0|68|0;DP=70;QUALapprox=2201;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,68,0:68:99:2201,0,2201:0,0,35,33 +chrX 1570903 . G . . END=1570938 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1800 +chrX 1570939 . A G, 2075.04 . AS_QUALapprox=|2085|0;AS_VarDP=0|63|0;DP=66;QUALapprox=2085;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,63,0:63:99:2085,0,2085:0,0,32,31 +chrX 1570940 . A . . END=1571219 GT:DP:GQ:MIN_DP:PL 0:73:99:73:0,1658 +chrX 1571220 . A G, 1759.04 . AS_QUALapprox=|1769|0;AS_VarDP=0|55|0;DP=57;QUALapprox=1769;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:1769,0,1769:0,0,27,28 +chrX 1571221 . G . . END=1571249 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1662 +chrX 1571250 . A G, 1702.04 . AS_QUALapprox=|1712|0;AS_VarDP=0|52|0;DP=55;QUALapprox=1712;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:1712,0,1712:0,0,24,28 +chrX 1571251 . G . . END=1571416 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1215 +chrX 1571417 . G GT,GTT, 442.01 . AS_QUALapprox=|346|452|0;AS_VarDP=0|4|11|0;DP=42;QUALapprox=452;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147200,42;VarDP=15 GT:AD:DP:GQ:PL:SB 2:0,4,11,0:15:99:452,106,0,320:0,0,6,9 +chrX 1571418 . T . . END=1571559 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,210 +chrX 1571560 . A C, 1986.04 . AS_QUALapprox=|1996|0;AS_VarDP=0|53|0;DP=56;QUALapprox=1996;RAW_GT_COUNT=0,0,1;RAW_MQandDP=197593,56;VarDP=53 GT:AD:DP:GQ:PL:SB 1:0,53,0:53:99:1996,0,1996:0,0,21,32 +chrX 1571561 . A . . END=1572544 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,975 +chrX 1572545 . G A, 357.04 . AS_QUALapprox=|367|0;AS_VarDP=28|40|0;BaseQRankSum=0.127;DP=71;MQRankSum=-0.807;QUALapprox=367;RAW_GT_COUNT=0,0,1;RAW_MQandDP=253600,71;ReadPosRankSum=0.455;VarDP=68 GT:AD:DP:GQ:PL:SB 1:28,40,0:68:99:367,0,1270:13,15,16,24 +chrX 1572546 . C . . END=1573198 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1328 +chrX 1573199 . GA G, 664.01 . AS_QUALapprox=|674|0;AS_VarDP=3|31|0;BaseQRankSum=-0.755;DP=52;MQRankSum=2.233;QUALapprox=674;RAW_GT_COUNT=0,0,1;RAW_MQandDP=184736,52;ReadPosRankSum=1.245;VarDP=34 GT:AD:DP:GQ:PL:SB 1:3,31,0:34:99:674,0,746:2,1,15,16 +chrX 1573201 . A . . END=1573506 GT:DP:GQ:MIN_DP:PL 0:47:99:47:0,1088 +chrX 1573507 . A G, 953.04 . AS_QUALapprox=|963|0;AS_VarDP=0|28|0;DP=29;QUALapprox=963;RAW_GT_COUNT=0,0,1;RAW_MQandDP=99661,29;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:963,0,963:0,0,16,12 +chrX 1573508 . A . . END=1573554 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,540 +chrX 1573555 . C CAAA,CAAAA, 1234.01 . AS_QUALapprox=|934|1244|0;AS_VarDP=0|2|21|0;DP=44;QUALapprox=1244;RAW_GT_COUNT=0,0,1;RAW_MQandDP=142870,44;VarDP=23 GT:AD:DP:GQ:PL:SB 2:0,2,21,0:23:99:1244,310,0,796:0,0,8,15 +chrX 1573556 . A . . END=1573918 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1062 +chrX 1573919 . CAA C,CA, 1456.01 . AS_QUALapprox=|1466|1195|0;AS_VarDP=0|40|30|0;DP=79;QUALapprox=1466;RAW_GT_COUNT=0,0,1;RAW_MQandDP=284400,79;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,40,30,0:70:99:1466,0,271,1289:0,0,36,34 +chrX 1573922 . A . . END=1574170 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1026 +chrX 1574171 . T C, 54.04 . AS_QUALapprox=|64|0;AS_VarDP=15|17|0;BaseQRankSum=0.525;DP=32;MQRankSum=0.000;QUALapprox=64;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;ReadPosRankSum=-0.435;VarDP=32 GT:AD:DP:GQ:PL:SB 1:15,17,0:32:64:64,0,546:7,8,5,12 +chrX 1574172 . T . . END=1574323 GT:DP:GQ:MIN_DP:PL 0:43:99:43:0,972 +chrX 1574324 . A G, 1760.04 . AS_QUALapprox=|1770|0;AS_VarDP=0|57|0;DP=57;QUALapprox=1770;RAW_GT_COUNT=0,0,1;RAW_MQandDP=204516,57;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:1770,0,1770:0,0,39,18 +chrX 1574325 . C . . END=1574387 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1705 +chrX 1574388 . C T, 119.04 . AS_QUALapprox=|129|0;AS_VarDP=28|33|0;BaseQRankSum=-0.571;DP=61;MQRankSum=-0.888;QUALapprox=129;RAW_GT_COUNT=0,0,1;RAW_MQandDP=218916,61;ReadPosRankSum=0.109;VarDP=61 GT:AD:DP:GQ:PL:SB 1:28,33,0:61:99:129,0,1042:20,8,22,11 +chrX 1574389 . C . . END=1575967 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1344 +chrX 1575968 . T . . END=1575968 GT:DP:GQ:MIN_DP:PL 0:51:15:51:0,15 +chrX 1575969 . G . . END=1576349 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1478 +chrX 1576350 . T C, 202.04 . AS_QUALapprox=|212|0;AS_VarDP=37|43|0;BaseQRankSum=0.884;DP=81;MQRankSum=0.000;QUALapprox=212;RAW_GT_COUNT=0,0,1;RAW_MQandDP=291600,81;ReadPosRankSum=-0.777;VarDP=80 GT:AD:DP:GQ:PL:SB 1:37,43,0:80:99:212,0,1438:15,22,22,21 +chrX 1576351 . C . . END=1576847 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1781 +chrX 1576848 . A G, 2104.04 . AS_QUALapprox=|2114|0;AS_VarDP=0|62|0;DP=63;QUALapprox=2114;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:2114,0,2114:0,0,33,29 +chrX 1576849 . C . . END=1577324 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,629 +chrX 1577325 . CTGGATGGA C,CTGGA, 359.01 . AS_QUALapprox=|369|276|0;AS_VarDP=4|15|11|0;DP=54;MQRankSum=0.000;QUALapprox=369;RAW_GT_COUNT=0,0,1;RAW_MQandDP=184930,54;VarDP=30 GT:AD:DP:GQ:PL:SB 1:4,15,11,0:30:93:369,0,93,535:0,1,9,12 +chrX 1577334 . T . . END=1577631 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,665 +chrX 1577632 . TATGG T, 482.01 . AS_QUALapprox=|492|0;AS_VarDP=2|16|0;BaseQRankSum=0.534;DP=32;MQRankSum=0.000;QUALapprox=492;RAW_GT_COUNT=0,0,1;RAW_MQandDP=113281,32;ReadPosRankSum=-0.351;VarDP=18 GT:AD:DP:GQ:PL:SB 1:2,16,0:18:99:492,0,527:1,1,10,6 +chrX 1577637 . A . . END=1577706 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,784 +chrX 1577707 . A G, 1131.04 . AS_QUALapprox=|1141|0;AS_VarDP=2|36|0;BaseQRankSum=2.823;DP=40;MQRankSum=1.015;QUALapprox=1141;RAW_GT_COUNT=0,0,1;RAW_MQandDP=132179,40;ReadPosRankSum=2.190;VarDP=38 GT:AD:DP:GQ:PL:SB 1:2,36,0:38:99:1141,0,1190:0,2,23,13 +chrX 1577708 . G . . END=1577727 GT:DP:GQ:MIN_DP:PL 0:38:99:38:0,902 +chrX 1577728 . C CTGGATGGA, 1477.01 . AS_QUALapprox=|1487|0;AS_VarDP=0|34|0;DP=42;QUALapprox=1487;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136204,42;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1487,0,1487:0,0,18,16 +chrX 1577729 . T . . END=1577839 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1290 +chrX 1577840 . T G, 2360.04 . AS_QUALapprox=|2370|0;AS_VarDP=0|55|0;DP=58;QUALapprox=2370;RAW_GT_COUNT=0,0,1;RAW_MQandDP=202999,58;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:2370,0,2370:0,0,30,25 +chrX 1577841 . T . . END=1577842 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,1772 +chrX 1577843 . G A, 2326.04 . AS_QUALapprox=|2336|0;AS_VarDP=0|54|0;DP=55;QUALapprox=2336;RAW_GT_COUNT=0,0,1;RAW_MQandDP=192199,55;VarDP=54 GT:AD:DP:GQ:PL:SB 1:0,54,0:54:99:2336,0,2336:0,0,30,24 +chrX 1577844 . C . . END=1578350 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1181 +chrX 1578351 . A C, 1629.04 . AS_QUALapprox=|1639|0;AS_VarDP=0|48|0;DP=49;QUALapprox=1639;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=48 GT:AD:DP:GQ:PL:SB 1:0,48,0:48:99:1639,0,1639:0,0,22,26 +chrX 1578352 . A . . END=1578614 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1692 +chrX 1578615 . G A, 1955.04 . AS_QUALapprox=|1965|0;AS_VarDP=0|59|0;DP=60;QUALapprox=1965;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:1965,0,1965:0,0,25,34 +chrX 1578616 . G . . END=1578751 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1354 +chrX 1578752 . T C, 1276.04 . AS_QUALapprox=|1286|0;AS_VarDP=0|41|0;DP=42;QUALapprox=1286;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151200,42;VarDP=41 GT:AD:DP:GQ:PL:SB 1:0,41,0:41:99:1286,0,1286:0,0,23,18 +chrX 1578753 . C . . END=1579326 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1191 +chrX 1579327 . G A, 325.04 . AS_QUALapprox=|335|0;AS_VarDP=22|31|0;BaseQRankSum=1.332;DP=58;MQRankSum=-0.804;QUALapprox=335;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208225,58;ReadPosRankSum=-1.192;VarDP=53 GT:AD:DP:GQ:PL:SB 1:22,31,0:53:99:335,0,1058:11,11,17,14 +chrX 1579328 . G . . END=1579504 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1659 +chrX 1579505 . A T, 1724.04 . AS_QUALapprox=|1734|0;AS_VarDP=0|53|0;DP=56;QUALapprox=1734;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=53 GT:AD:DP:GQ:PL:SB 1:0,53,0:53:99:1734,0,1734:0,0,25,28 +chrX 1579506 . A . . END=1579776 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1502 +chrX 1579777 . T C, 2152.04 . AS_QUALapprox=|2162|0;AS_VarDP=0|68|0;DP=69;QUALapprox=2162;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,68,0:68:99:2162,0,2162:0,0,35,33 +chrX 1579778 . A . . END=1580435 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1117 +chrX 1580436 . AAAT A, 2003.01 . AS_QUALapprox=|2013|0;AS_VarDP=2|47|0;BaseQRankSum=-1.011;DP=54;MQRankSum=-0.103;QUALapprox=2013;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194049,54;ReadPosRankSum=0.177;VarDP=49 GT:AD:DP:GQ:PL:SB 1:2,47,0:49:99:2013,0,2082:2,0,28,19 +chrX 1580440 . A . . END=1580509 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,1334 +chrX 1580510 . A AT, 1839.01 . AS_QUALapprox=|1849|0;AS_VarDP=0|47|0;DP=51;QUALapprox=1849;RAW_GT_COUNT=0,0,1;RAW_MQandDP=173052,51;VarDP=47 GT:AD:DP:GQ:PL:SB 1:0,47,0:47:99:1849,0,1850:0,0,22,25 +chrX 1580511 . A . . END=1580881 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1162 +chrX 1580882 . T C, 70.04 . AS_QUALapprox=|80|0;AS_VarDP=28|29|0;BaseQRankSum=0.225;DP=59;MQRankSum=0.075;QUALapprox=80;RAW_GT_COUNT=0,0,1;RAW_MQandDP=209450,59;ReadPosRankSum=0.008;VarDP=57 GT:AD:DP:GQ:PL:SB 1:28,29,0:57:80:80,0,968:13,15,16,13 +chrX 1580883 . C . . END=1581165 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1419 +chrX 1581166 . C T, 75.04 . AS_QUALapprox=|85|0;AS_VarDP=30|33|0;BaseQRankSum=-0.445;DP=65;MQRankSum=0.000;QUALapprox=85;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;ReadPosRankSum=0.365;VarDP=63 GT:AD:DP:GQ:PL:SB 1:30,33,0:63:85:85,0,1077:19,11,19,14 +chrX 1581167 . C . . END=1581907 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,126 +chrX 1581908 . TATTA T, 225.01 . AS_QUALapprox=|235|0;AS_VarDP=26|31|0;BaseQRankSum=-0.539;DP=60;MQRankSum=-0.991;QUALapprox=235;RAW_GT_COUNT=0,0,1;RAW_MQandDP=184983,60;ReadPosRankSum=0.000;VarDP=57 GT:AD:DP:GQ:PL:SB 1:26,31,0:57:99:235,0,1364:15,11,20,11 +chrX 1581913 . A . . END=1581970 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1329 +chrX 1581971 . T A, 19.04 . AS_QUALapprox=|29|0;AS_VarDP=27|26|0;BaseQRankSum=-1.882;DP=53;MQRankSum=-1.431;QUALapprox=29;RAW_GT_COUNT=0,0,1;RAW_MQandDP=163407,53;ReadPosRankSum=1.191;VarDP=53 GT:AD:DP:GQ:PL:SB 1:27,26,0:53:29:29,0,1160:14,13,17,9 +chrX 1581972 . A . . END=1582001 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,1574 +chrX 1582002 . G C, 65.04 . AS_QUALapprox=|75|0;AS_VarDP=27|28|0;BaseQRankSum=0.000;DP=55;MQRankSum=-1.040;QUALapprox=75;RAW_GT_COUNT=0,0,1;RAW_MQandDP=171169,55;ReadPosRankSum=-1.291;VarDP=55 GT:AD:DP:GQ:PL:SB 1:27,28,0:55:75:75,0,1179:17,10,20,8 +chrX 1582003 . A . . END=1582047 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1260 +chrX 1582048 . A . . END=1582051 GT:DP:GQ:MIN_DP:PL 0:64:0:64:0,0 +chrX 1582052 . A . . END=1582222 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1722 +chrX 1582223 . C T, 1598.04 . AS_QUALapprox=|1608|0;AS_VarDP=0|50|0;DP=58;QUALapprox=1608;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154026,58;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,50,0:50:99:1608,0,1608:0,0,24,26 +chrX 1582224 . C . . END=1582607 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,233 +chrX 1582608 . CTT C, 456.01 . AS_QUALapprox=|466|0;AS_VarDP=6|21|0;BaseQRankSum=-1.292;DP=47;MQRankSum=0.534;QUALapprox=466;RAW_GT_COUNT=0,0,1;RAW_MQandDP=164961,47;ReadPosRankSum=0.228;VarDP=27 GT:AD:DP:GQ:PL:SB 1:6,21,0:27:99:466,0,602:6,0,10,11 +chrX 1582611 . T . . END=1582705 GT:DP:GQ:MIN_DP:PL 0:45:99:45:0,968 +chrX 1582706 . G A, 2353.04 . AS_QUALapprox=|2363|0;AS_VarDP=0|53|0;DP=53;QUALapprox=2363;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=53 GT:AD:DP:GQ:PL:SB 1:0,53,0:53:99:2363,0,2363:0,0,20,33 +chrX 1582707 . G . . END=1582720 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,1573 +chrX 1582721 . T C, 2285.04 . AS_QUALapprox=|2295|0;AS_VarDP=0|51|0;DP=51;QUALapprox=2295;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=51 GT:AD:DP:GQ:PL:SB 1:0,51,0:51:99:2295,0,2295:0,0,19,32 +chrX 1582722 . G C, 2310.04 . AS_QUALapprox=|2320|0;AS_VarDP=0|52|0;DP=52;QUALapprox=2320;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:2320,0,2320:0,0,19,33 +chrX 1582723 . T . . END=1582732 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1708 +chrX 1582733 . C A, 2369.04 . AS_QUALapprox=|2379|0;AS_VarDP=0|55|0;DP=56;QUALapprox=2379;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:2379,0,2379:0,0,20,35 +chrX 1582734 . C . . END=1582829 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1623 +chrX 1582830 . G C, 1768.04 . AS_QUALapprox=|1778|0;AS_VarDP=0|53|0;DP=57;QUALapprox=1778;RAW_GT_COUNT=0,0,1;RAW_MQandDP=202176,57;VarDP=53 GT:AD:DP:GQ:PL:SB 1:0,53,0:53:99:1778,0,1778:0,0,22,31 +chrX 1582831 . C . . END=1582849 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1613 +chrX 1582850 . C T, 1720.04 . AS_QUALapprox=|1730|0;AS_VarDP=0|53|0;DP=54;QUALapprox=1730;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=53 GT:AD:DP:GQ:PL:SB 1:0,53,0:53:99:1730,0,1730:0,0,23,30 +chrX 1582851 . G . . END=1583016 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1677 +chrX 1583017 . T TA,TAA, 1088.01 . AS_QUALapprox=|685|1098|0;AS_VarDP=0|14|30|0;DP=58;QUALapprox=1098;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=44 GT:AD:DP:GQ:PL:SB 2:0,14,30,0:44:99:1098,413,0,939:0,0,24,20 +chrX 1583018 . A . . END=1583082 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1623 +chrX 1583083 . G T, 2926.04 . AS_QUALapprox=|2936|0;AS_VarDP=0|66|0;DP=69;QUALapprox=2936;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=66 GT:AD:DP:GQ:PL:SB 1:0,66,0:66:99:2936,0,2936:0,0,34,32 +chrX 1583084 . G . . END=1583088 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1800 +chrX 1583089 . C T, 2982.04 . AS_QUALapprox=|2992|0;AS_VarDP=0|67|0;DP=68;QUALapprox=2992;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,67,0:67:99:2992,0,2992:0,0,36,31 +chrX 1583090 . G . . END=1583094 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1800 +chrX 1583095 . T A, 2915.04 . AS_QUALapprox=|2925|0;AS_VarDP=0|65|0;DP=66;QUALapprox=2925;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,65,0:65:99:2925,0,2925:0,0,36,29 +chrX 1583096 . A . . END=1583104 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1800 +chrX 1583105 . A G, 2946.04 . AS_QUALapprox=|2956|0;AS_VarDP=0|68|0;DP=69;QUALapprox=2956;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,68,0:68:99:2956,0,2956:0,0,38,30 +chrX 1583106 . G . . END=1583151 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1800 +chrX 1583152 . G T, 2020.04 . AS_QUALapprox=|2030|0;AS_VarDP=0|63|0;DP=66;QUALapprox=2030;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,63,0:63:99:2030,0,2030:0,0,35,28 +chrX 1583153 . T . . END=1583418 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1513 +chrX 1583419 . T C, 2255.04 . AS_QUALapprox=|2265|0;AS_VarDP=0|53|0;DP=58;QUALapprox=2265;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=53 GT:AD:DP:GQ:PL:SB 1:0,53,0:53:99:2265,0,2265:0,0,20,33 +chrX 1583420 . A . . END=1583444 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,1558 +chrX 1583445 . A G, 2308.04 . AS_QUALapprox=|2318|0;AS_VarDP=0|56|0;DP=61;QUALapprox=2318;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,56,0:56:99:2318,0,2318:0,0,25,31 +chrX 1583446 . G . . END=1583509 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1572 +chrX 1583510 . A . . END=1583510 GT:DP:GQ:MIN_DP:PL 0:57:0:57:0,0 +chrX 1583511 . T . . END=1583511 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1800 +chrX 1583512 . A . . END=1583512 GT:DP:GQ:MIN_DP:PL 0:57:0:57:0,0 +chrX 1583513 . T . . END=1583586 GT:DP:GQ:MIN_DP:PL 0:12:99:12:0,180 +chrX 1583587 . T C, 120.04 . AS_QUALapprox=|130|0;AS_VarDP=0|4|0;DP=14;QUALapprox=130;RAW_GT_COUNT=0,0,1;RAW_MQandDP=46890,14;VarDP=4 GT:AD:DP:GQ:PL:SB 1:0,4,0:4:99:130,0,130:0,0,0,4 +chrX 1583588 . C . . END=1583590 GT:DP:GQ:MIN_DP:PL 0:12:99:12:0,367 +chrX 1583591 . T C,TTC,TCTTCCTTC, 485.04 . AS_QUALapprox=|495|331|240|0;AS_VarDP=0|4|0|0|0;DP=14;QUALapprox=495;RAW_GT_COUNT=0,0,1;RAW_MQandDP=46890,14;VarDP=4 GT:AD:DP:GQ:PL:SB 1:0,4,0,0,0:4:99:495,0,164,255,214:0,0,0,4 +chrX 1583592 . C . . END=1583653 GT:DP:GQ:MIN_DP:PL 0:21:99:21:0,282 +chrX 1583654 . T TTCTC, 1342.01 . AS_QUALapprox=|1352|0;AS_VarDP=0|31|0;DP=35;QUALapprox=1352;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122965,35;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1352,0,1352:0,0,14,17 +chrX 1583655 . T . . END=1583741 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,1234 +chrX 1583742 . A G, 2568.04 . AS_QUALapprox=|2578|0;AS_VarDP=0|58|0;DP=66;QUALapprox=2578;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234154,66;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,58,0:58:99:2578,0,2578:0,0,34,24 +chrX 1583743 . C . . END=1583748 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1800 +chrX 1583749 . G A, 2568.04 . AS_QUALapprox=|2578|0;AS_VarDP=0|58|0;DP=65;QUALapprox=2578;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230554,65;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,58,0:58:99:2578,0,2578:0,0,34,24 +chrX 1583750 . G . . END=1583786 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1791 +chrX 1583787 . C G, 2693.04 . AS_QUALapprox=|2703|0;AS_VarDP=0|62|0;DP=67;QUALapprox=2703;RAW_GT_COUNT=0,0,1;RAW_MQandDP=240625,67;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:2703,0,2703:0,0,37,25 +chrX 1583788 . T . . END=1583802 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1800 +chrX 1583803 . G A, 2738.04 . AS_QUALapprox=|2748|0;AS_VarDP=0|62|0;DP=66;QUALapprox=2748;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237025,66;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:2748,0,2748:0,0,37,25 +chrX 1583804 . T . . END=1584063 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1800 +chrX 1584064 . G C, 2093.04 . AS_QUALapprox=|2103|0;AS_VarDP=0|67|0;DP=70;QUALapprox=2103;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,67,0:67:99:2103,0,2103:0,0,38,29 +chrX 1584065 . T . . END=1584224 GT:DP:GQ:MIN_DP:PL 0:77:99:77:0,1800 +chrX 1584225 . A T, 1488.04 . AS_QUALapprox=|2746|0;AS_VarDP=0|67|0;DP=69;QUALapprox=2746;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,67,0:67:99:2746,0,2135:0,0,21,33 +chrX 1584226 . T A, 1420.04 . AS_QUALapprox=|1430|0;AS_VarDP=2|54|0;BaseQRankSum=2.125;DP=68;MQRankSum=0.000;QUALapprox=1430;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;ReadPosRankSum=-0.420;VarDP=56 GT:AD:DP:GQ:PL:SB 1:2,54,0:56:99:1430,0,1486:1,1,21,33 +chrX 1584227 . T . . END=1584672 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1548 +chrX 1584673 . C G, 14.03 . AS_QUALapprox=|24|0;AS_VarDP=29|31|0;BaseQRankSum=-0.991;DP=61;MQRankSum=0.000;QUALapprox=24;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;ReadPosRankSum=1.132;VarDP=60 GT:AD:DP:GQ:PL:SB 1:29,31,0:60:24:24,0,1002:14,15,11,20 +chrX 1584674 . C . . END=1584713 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1753 +chrX 1584714 . T C, 251.04 . AS_QUALapprox=|261|0;AS_VarDP=22|34|0;BaseQRankSum=-2.756;DP=59;MQRankSum=0.000;QUALapprox=261;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;ReadPosRankSum=-2.182;VarDP=56 GT:AD:DP:GQ:PL:SB 1:22,34,0:56:99:261,0,996:11,11,16,18 +chrX 1584715 . G . . END=1584913 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1162 +chrX 1584914 . T TA, 0 . AS_QUALapprox=|1|0;AS_VarDP=20|21|0;BaseQRankSum=-2.007;DP=53;MQRankSum=0.035;QUALapprox=1;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187365,53;ReadPosRankSum=-1.488;VarDP=41 GT:AD:DP:GQ:PL:SB 1:20,21,0:41:1:1,0,486:11,9,7,14 +chrX 1584915 . A . . END=1584942 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,1568 +chrX 1584943 . AAG A, 2525.01 . AS_QUALapprox=|2535|0;AS_VarDP=0|58|0;DP=58;QUALapprox=2535;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208564,58;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,58,0:58:99:2535,0,2535:0,0,35,23 +chrX 1584946 . A . . END=1584970 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1800 +chrX 1584971 . A G, 2083.04 . AS_QUALapprox=|2093|0;AS_VarDP=0|68|0;DP=68;QUALapprox=2093;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,68,0:68:99:2093,0,2093:0,0,41,27 +chrX 1584972 . T . . END=1585102 GT:DP:GQ:MIN_DP:PL 0:73:99:73:0,1800 +chrX 1585103 . A G, 216.04 . AS_QUALapprox=|226|0;AS_VarDP=27|36|0;BaseQRankSum=-1.729;DP=65;MQRankSum=-1.916;QUALapprox=226;RAW_GT_COUNT=0,0,1;RAW_MQandDP=220163,65;ReadPosRankSum=0.757;VarDP=63 GT:AD:DP:GQ:PL:SB 1:27,36,0:63:99:226,0,1119:12,15,17,19 +chrX 1585104 . T . . END=1585114 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1800 +chrX 1585115 . T C, 2484.04 . AS_QUALapprox=|2494|0;AS_VarDP=0|65|0;DP=67;QUALapprox=2494;RAW_GT_COUNT=0,0,1;RAW_MQandDP=218011,67;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,65,0:65:99:2494,0,2494:0,0,28,37 +chrX 1585116 . G . . END=1585153 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1800 +chrX 1585154 . A G, 2760.04 . AS_QUALapprox=|2770|0;AS_VarDP=0|63|0;DP=63;QUALapprox=2770;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201147,63;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,63,0:63:99:2770,0,2770:0,0,23,40 +chrX 1585155 . A . . END=1585167 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1800 +chrX 1585168 . T A, 2795.04 . AS_QUALapprox=|2805|0;AS_VarDP=0|64|0;DP=64;QUALapprox=2805;RAW_GT_COUNT=0,0,1;RAW_MQandDP=202303,64;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,64,0:64:99:2805,0,2805:0,0,23,41 +chrX 1585169 . C . . END=1585198 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1800 +chrX 1585199 . G A, 0.07 . AS_QUALapprox=|6|0;AS_VarDP=30|29|0;BaseQRankSum=1.280;DP=60;MQRankSum=-2.179;QUALapprox=6;RAW_GT_COUNT=0,0,1;RAW_MQandDP=193478,60;ReadPosRankSum=2.138;VarDP=59 GT:AD:DP:GQ:PL:SB 1:30,29,0:59:6:6,0,963:12,18,14,15 +chrX 1585200 . A . . END=1585366 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,1166 +chrX 1585367 . A C, 1747.04 . AS_QUALapprox=|1757|0;AS_VarDP=1|41|0;DP=43;MQRankSum=2.915;QUALapprox=1757;RAW_GT_COUNT=0,0,1;RAW_MQandDP=150006,43;VarDP=42 GT:AD:DP:GQ:PL:SB 1:1,41,0:42:99:1757,0,1791:1,0,22,19 +chrX 1585368 . G . . END=1585375 GT:DP:GQ:MIN_DP:PL 0:41:99:41:0,1259 +chrX 1585376 . G A, 1697.04 . AS_QUALapprox=|1707|0;AS_VarDP=1|40|0;BaseQRankSum=-0.302;DP=42;MQRankSum=2.872;QUALapprox=1707;RAW_GT_COUNT=0,0,1;RAW_MQandDP=146406,42;ReadPosRankSum=1.300;VarDP=41 GT:AD:DP:GQ:PL:SB 1:1,40,0:41:99:1707,0,1741:1,0,21,19 +chrX 1585377 . A . . END=1585385 GT:DP:GQ:MIN_DP:PL 0:37:99:37:0,1150 +chrX 1585386 . CAAAA C, 1012.04 . AS_QUALapprox=|1250|0;AS_VarDP=2|32|0;BaseQRankSum=-0.422;DP=46;MQRankSum=3.672;QUALapprox=1250;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162231,46;ReadPosRankSum=1.136;VarDP=34 GT:AD:DP:GQ:PL:SB 1:2,32,0:34:99:1250,0,1189:1,0,17,11 +chrX 1585391 . A . . END=1585449 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,1385 +chrX 1585450 . C T, 1906.04 . AS_QUALapprox=|1916|0;AS_VarDP=0|58|0;DP=60;QUALapprox=1916;RAW_GT_COUNT=0,0,1;RAW_MQandDP=215425,60;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,58,0:58:99:1916,0,1916:0,0,30,28 +chrX 1585451 . G . . END=1585901 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1648 +chrX 1585902 . GT G, 1756.01 . AS_QUALapprox=|1766|0;AS_VarDP=0|58|0;DP=70;QUALapprox=1766;RAW_GT_COUNT=0,0,1;RAW_MQandDP=251425,70;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,58,0:58:99:1766,0,1766:0,0,26,32 +chrX 1585904 . T . . END=1585938 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1800 +chrX 1585939 . TTTG T, 2769.01 . AS_QUALapprox=|2779|0;AS_VarDP=0|63|0;DP=69;QUALapprox=2779;RAW_GT_COUNT=0,0,1;RAW_MQandDP=247250,69;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,63,0:63:99:2779,0,2779:0,0,33,30 +chrX 1585943 . T . . END=1585966 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1800 +chrX 1585967 . GTTTGTT G, 2975.01 . AS_QUALapprox=|2985|0;AS_VarDP=0|67|0;DP=68;QUALapprox=2985;RAW_GT_COUNT=0,0,1;RAW_MQandDP=243650,68;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,67,0:67:99:2985,0,2985:0,0,38,29 +chrX 1585974 . T . . END=1585983 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1800 +chrX 1585984 . T C, 2834.04 . AS_QUALapprox=|2844|0;AS_VarDP=0|65|0;DP=65;QUALapprox=2844;RAW_GT_COUNT=0,0,1;RAW_MQandDP=232850,65;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,65,0:65:99:2844,0,2844:0,0,40,25 +chrX 1585985 . G . . END=1586173 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1578 +chrX 1586174 . C T, 2206.04 . AS_QUALapprox=|2216|0;AS_VarDP=0|70|0;DP=72;QUALapprox=2216;RAW_GT_COUNT=0,0,1;RAW_MQandDP=257625,72;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,70,0:70:99:2216,0,2216:0,0,38,32 +chrX 1586175 . C . . END=1586881 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1378 +chrX 1586882 . G C, 2099.04 . AS_QUALapprox=|2109|0;AS_VarDP=0|65|0;DP=66;QUALapprox=2109;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,65,0:65:99:2109,0,2109:0,0,31,34 +chrX 1586883 . A . . END=1587450 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1473 +chrX 1587451 . T TG, 1845.01 . AS_QUALapprox=|1855|0;AS_VarDP=0|56|0;DP=64;QUALapprox=1855;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,56,0:56:99:1855,0,1855:0,0,17,39 +chrX 1587452 . G . . END=1587607 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,690 +chrX 1587608 . TTCCCCTCCCCTCCCTTCCCCTCCTCTACCTTCCCTTCCCCTCCCC T, 62.01 . AS_QUALapprox=|72|0;AS_VarDP=2|3|0;BaseQRankSum=-1.036;DP=23;MQRankSum=-0.524;QUALapprox=72;RAW_GT_COUNT=0,0,1;RAW_MQandDP=76829,23;ReadPosRankSum=-1.036;VarDP=5 GT:AD:DP:GQ:PL:SB 1:2,3,0:5:72:72,0,103:1,1,0,3 +chrX 1587654 . T . . END=1587700 GT:DP:GQ:MIN_DP:PL 0:14:0:14:0,0 +chrX 1587701 . C *,T, 141.04 . AS_QUALapprox=|0|259|0;AS_VarDP=0|0|3|0;DP=6;QUALapprox=259;RAW_GT_COUNT=0,0,1;RAW_MQandDP=18900,6;VarDP=3 GT:AD:DP:GQ:PL:SB 2:0,0,3,0:3:99:259,121,0,191:0,0,0,3 +chrX 1587702 . C . . END=1587712 GT:DP:GQ:MIN_DP:PL 0:6:0:6:0,0 +chrX 1587713 . TTCCCC *,T, 150.04 . AS_QUALapprox=|0|259|0;AS_VarDP=0|0|3|0;DP=6;QUALapprox=259;RAW_GT_COUNT=0,0,1;RAW_MQandDP=18900,6;VarDP=3 GT:AD:DP:GQ:PL:SB 2:0,0,3,0:3:99:259,121,0,191:0,0,0,3 +chrX 1587719 . T . . END=1587728 GT:DP:GQ:MIN_DP:PL 0:6:0:6:0,0 +chrX 1587729 . TCCC *,T, 150.04 . AS_QUALapprox=|0|259|0;AS_VarDP=0|0|3|0;DP=6;QUALapprox=259;RAW_GT_COUNT=0,0,1;RAW_MQandDP=18900,6;VarDP=3 GT:AD:DP:GQ:PL:SB 2:0,0,3,0:3:99:259,121,0,191:0,0,0,3 +chrX 1587733 . C . . END=1587734 GT:DP:GQ:MIN_DP:PL 0:6:0:6:0,0 +chrX 1587735 . CCT *,C, 150.04 . AS_QUALapprox=|0|259|0;AS_VarDP=0|0|3|0;DP=6;QUALapprox=259;RAW_GT_COUNT=0,0,1;RAW_MQandDP=18900,6;VarDP=3 GT:AD:DP:GQ:PL:SB 2:0,0,3,0:3:99:259,121,0,191:0,0,0,3 +chrX 1587738 . C . . END=1587755 GT:DP:GQ:MIN_DP:PL 0:6:0:6:0,0 +chrX 1587756 . CCTTCCCCTCCCCTCT C, 111.01 . AS_QUALapprox=|121|0;AS_VarDP=0|3|0;DP=6;QUALapprox=121;RAW_GT_COUNT=0,0,1;RAW_MQandDP=18900,6;VarDP=3 GT:AD:DP:GQ:PL:SB 1:0,3,0:3:99:121,0,124:0,0,0,3 +chrX 1587772 . C . . END=1587787 GT:DP:GQ:MIN_DP:PL 0:6:0:6:0,0 +chrX 1587788 . T C,TTCCCCTCTCCTCCCCTCCCTTCCCCTCCCCTCCCCTCCCTTCCCC, 78.04 . AS_QUALapprox=|88|0|0;AS_VarDP=0|2|0|0;DP=4;QUALapprox=88;RAW_GT_COUNT=0,0,1;RAW_MQandDP=11700,4;VarDP=2 GT:AD:DP:GQ:PL:SB 1:0,2,0,0:2:88:88,0,178,134:0,0,0,2 +chrX 1587789 . T . . END=1587823 GT:DP:GQ:MIN_DP:PL 0:8:70:8:0,70 +chrX 1587824 . T . . END=1587824 GT:DP:GQ:MIN_DP:PL 0:8:0:8:0,0 +chrX 1587825 . C . . END=1587844 GT:DP:GQ:MIN_DP:PL 0:5:20:4:0,20 +chrX 1587845 . C . . END=1587847 GT:DP:GQ:MIN_DP:PL 0:4:0:4:0,0 +chrX 1587848 . C . . END=1587852 GT:DP:GQ:MIN_DP:PL 0:3:35:3:0,35 +chrX 1587853 . T . . END=1587853 GT:DP:GQ:MIN_DP:PL 0:3:0:3:0,0 +chrX 1587854 . T . . END=1587870 GT:DP:GQ:MIN_DP:PL 0:3:35:3:0,35 +chrX 1587871 . T . . END=1587872 GT:DP:GQ:MIN_DP:PL 0:4:0:4:0,0 +chrX 1587873 . C . . END=1587891 GT:DP:GQ:MIN_DP:PL 0:4:20:3:0,20 +chrX 1587892 . A . . END=1587892 GT:DP:GQ:MIN_DP:PL 0:4:0:4:0,0 +chrX 1587893 . C . . END=1587906 GT:DP:GQ:MIN_DP:PL 0:3:35:2:0,35 +chrX 1587907 . T . . END=1587908 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 1587909 . C . . END=1587946 GT:DP:GQ:MIN_DP:PL 0:3:24:1:0,24 +chrX 1587947 . G . . END=1587947 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 1587948 . C . . END=1587955 GT:DP:GQ:MIN_DP:PL 0:3:70:3:0,70 +chrX 1587956 . T . . END=1587956 GT:DP:GQ:MIN_DP:PL 0:2:10:2:0,10 +chrX 1587957 . C . . END=1587961 GT:DP:GQ:MIN_DP:PL 0:3:25:2:0,25 +chrX 1587962 . T . . END=1587965 GT:DP:GQ:MIN_DP:PL 0:4:0:4:0,0 +chrX 1587966 . C . . END=1587969 GT:DP:GQ:MIN_DP:PL 0:5:39:4:0,39 +chrX 1587970 . T . . END=1587971 GT:DP:GQ:MIN_DP:PL 0:4:0:4:0,0 +chrX 1587972 . C . . END=1587974 GT:DP:GQ:MIN_DP:PL 0:5:73:5:0,73 +chrX 1587975 . T . . END=1587975 GT:DP:GQ:MIN_DP:PL 0:3:0:3:0,0 +chrX 1587976 . C . . END=1587976 GT:DP:GQ:MIN_DP:PL 0:5:99:5:0,143 +chrX 1587977 . T . . END=1587977 GT:DP:GQ:MIN_DP:PL 0:4:0:4:0,0 +chrX 1587978 . C . . END=1588052 GT:DP:GQ:MIN_DP:PL 0:4:29:3:0,29 +chrX 1588053 . C . . END=1588070 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 1588071 . C . . END=1588073 GT:DP:GQ:MIN_DP:PL 0:2:45:2:0,45 +chrX 1588074 . C T, 10.05 . AS_QUALapprox=|20|0;AS_VarDP=0|0|0;BaseQRankSum=0.000;DP=9;MQRankSum=-0.674;QUALapprox=20;RAW_GT_COUNT=0,0,1;RAW_MQandDP=26435,9;ReadPosRankSum=-0.674;VarDP=2 GT:AD:DP:GQ:PL:SB 1:1,1,0:2:20:20,0,25:0,1,0,1 +chrX 1588075 . T . . END=1588098 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1588099 . C . . END=1588101 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 1588102 . C . . END=1588102 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 1588103 . C . . END=1588104 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 1588105 . T . . END=1588107 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 1588108 . C . . END=1588111 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 1588112 . C . . END=1588112 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 1588113 . C . . END=1588115 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1588116 . T . . END=1588117 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 1588118 . C . . END=1588118 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 1588119 . T C, 0.87 . AS_QUALapprox=|10|0;AS_VarDP=0|0|0;DP=12;QUALapprox=10;RAW_GT_COUNT=0,0,1;RAW_MQandDP=37580,12;VarDP=1 GT:AD:DP:GQ:PL:SB 1:0,1,0:1:10:10,0,10:0,0,0,1 +chrX 1588120 . T . . END=1588149 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1588150 . C . . END=1588274 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1588275 . T . . END=1588276 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 1588277 . C . . END=1588277 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1588278 . C . . END=1588278 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 1588279 . C . . END=1588284 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1588285 . C . . END=1588285 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1588286 . T . . END=1588286 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1588287 . C . . END=1588289 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1588290 . C . . END=1588290 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1588291 . T . . END=1588292 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 1588293 . C . . END=1588294 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1588295 . C . . END=1588297 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1588298 . C . . END=1588299 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1588300 . T . . END=1588303 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 1588304 . C . . END=1588304 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1588305 . T . . END=1588306 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 1588307 . C . . END=1588308 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1588309 . C . . END=1588309 GT:DP:GQ:MIN_DP:PL 0:2:59:2:0,59 +chrX 1588310 . C . . END=1588312 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 1588313 . C . . END=1588313 GT:DP:GQ:MIN_DP:PL 0:2:70:2:0,70 +chrX 1588314 . C . . END=1588316 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 1588317 . C . . END=1588318 GT:DP:GQ:MIN_DP:PL 0:2:70:2:0,70 +chrX 1588319 . T . . END=1588319 GT:DP:GQ:MIN_DP:PL 0:2:10:2:0,10 +chrX 1588320 . C . . END=1588334 GT:DP:GQ:MIN_DP:PL 0:2:49:2:0,49 +chrX 1588335 . C . . END=1588335 GT:DP:GQ:MIN_DP:PL 0:2:10:2:0,10 +chrX 1588336 . T . . END=1588337 GT:DP:GQ:MIN_DP:PL 0:2:49:2:0,49 +chrX 1588338 . C . . END=1588338 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 1588339 . T . . END=1588342 GT:DP:GQ:MIN_DP:PL 0:2:49:2:0,49 +chrX 1588343 . C . . END=1588343 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 1588344 . C . . END=1588344 GT:DP:GQ:MIN_DP:PL 0:2:70:2:0,70 +chrX 1588345 . T . . END=1588345 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 1588346 . T . . END=1588354 GT:DP:GQ:MIN_DP:PL 0:2:70:2:0,70 +chrX 1588355 . T . . END=1588355 GT:DP:GQ:MIN_DP:PL 0:3:0:3:0,0 +chrX 1588356 . T . . END=1588411 GT:DP:GQ:MIN_DP:PL 0:3:25:2:0,25 +chrX 1588412 . C . . END=1588447 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 1588448 . C . . END=1588454 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 1588455 . C . . END=1588808 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1588809 . C . . END=1588817 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1588818 . C . . END=1588818 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 1588819 . T . . END=1588820 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1588821 . C . . END=1588824 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1588825 . T . . END=1588869 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1588870 . C . . END=1588870 GT:DP:GQ:MIN_DP:PL 0:2:10:2:0,10 +chrX 1588871 . T . . END=1588883 GT:DP:GQ:MIN_DP:PL 0:3:49:3:0,49 +chrX 1588884 . A . . END=1588884 GT:DP:GQ:MIN_DP:PL 0:3:0:3:0,0 +chrX 1588885 . C . . END=1588900 GT:DP:GQ:MIN_DP:PL 0:3:45:3:0,45 +chrX 1588901 . T . . END=1588901 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 1588902 . C . . END=1588944 GT:DP:GQ:MIN_DP:PL 0:2:35:1:0,35 +chrX 1588945 . T . . END=1588945 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 1588946 . A . . END=1589010 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1589011 . C . . END=1589014 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1589015 . C . . END=1589015 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1589016 . C . . END=1589021 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 1589022 . C . . END=1589023 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1589024 . T . . END=1589030 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1589031 . C . . END=1589043 GT:DP:GQ:MIN_DP:PL 0:2:29:2:0,29 +chrX 1589044 . C . . END=1589044 GT:DP:GQ:MIN_DP:PL 0:2:10:2:0,10 +chrX 1589045 . T . . END=1589070 GT:DP:GQ:MIN_DP:PL 0:2:25:1:0,25 +chrX 1589071 . T . . END=1589071 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 1589072 . C . . END=1589072 GT:DP:GQ:MIN_DP:PL 0:2:45:2:0,45 +chrX 1589073 . C . . END=1589073 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 1589074 . C . . END=1589075 GT:DP:GQ:MIN_DP:PL 0:2:29:2:0,29 +chrX 1589076 . T . . END=1589076 GT:DP:GQ:MIN_DP:PL 0:2:10:2:0,10 +chrX 1589077 . C . . END=1589079 GT:DP:GQ:MIN_DP:PL 0:2:39:2:0,39 +chrX 1589080 . T . . END=1589080 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 1589081 . T . . END=1589099 GT:DP:GQ:MIN_DP:PL 0:2:29:1:0,29 +chrX 1589100 . C . . END=1589100 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 1589101 . T . . END=1589120 GT:DP:GQ:MIN_DP:PL 0:2:35:1:0,35 +chrX 1589121 . T . . END=1589189 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1589190 . T . . END=1589209 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1589210 . T . . END=1589210 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 1589211 . T . . END=1590282 GT:DP:GQ:MIN_DP:PL 0:35:35:1:0,35 +chrX 1590283 . A C, 1839.04 . AS_QUALapprox=|1849|0;AS_VarDP=0|57|0;DP=58;QUALapprox=1849;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208116,58;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:1849,0,1849:0,0,30,27 +chrX 1590284 . C . . END=1590886 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1636 +chrX 1590887 . A C, 2806.04 . AS_QUALapprox=|2816|0;AS_VarDP=1|66|0;BaseQRankSum=-0.545;DP=69;MQRankSum=0.000;QUALapprox=2816;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;ReadPosRankSum=-0.026;VarDP=67 GT:AD:DP:GQ:PL:SB 1:1,66,0:67:99:2816,0,2861:0,1,28,38 +chrX 1590888 . A . . END=1590893 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1800 +chrX 1590894 . A G, 2712.04 . AS_QUALapprox=|2722|0;AS_VarDP=1|63|0;BaseQRankSum=-0.686;DP=66;MQRankSum=0.000;QUALapprox=2722;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;ReadPosRankSum=-0.487;VarDP=64 GT:AD:DP:GQ:PL:SB 1:1,63,0:64:99:2722,0,2767:0,1,27,36 +chrX 1590895 . T . . END=1591034 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1800 +chrX 1591035 . A C, 2123.04 . AS_QUALapprox=|2133|0;AS_VarDP=0|66|0;DP=69;QUALapprox=2133;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=66 GT:AD:DP:GQ:PL:SB 1:0,66,0:66:99:2133,0,2133:0,0,39,27 +chrX 1591036 . T . . END=1591175 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1637 +chrX 1591176 . T G, 2050.04 . AS_QUALapprox=|2060|0;AS_VarDP=0|62|0;DP=68;QUALapprox=2060;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:2060,0,2060:0,0,29,33 +chrX 1591177 . A . . END=1591873 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,968 +chrX 1591874 . C T, 813.04 . AS_QUALapprox=|823|0;AS_VarDP=0|26|0;DP=33;QUALapprox=823;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:823,0,823:0,0,21,5 +chrX 1591875 . C . . END=1592271 GT:DP:GQ:MIN_DP:PL 0:46:99:46:0,338 +chrX 1592272 . A G, 1935.04 . AS_QUALapprox=|1945|0;AS_VarDP=0|58|0;DP=59;QUALapprox=1945;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,58,0:58:99:1945,0,1945:0,0,35,23 +chrX 1592273 . C . . END=1594127 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1483 +chrX 1594128 . C T, 2405.04 . AS_QUALapprox=|2415|0;AS_VarDP=0|77|0;DP=81;QUALapprox=2415;RAW_GT_COUNT=0,0,1;RAW_MQandDP=291600,81;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,77,0:77:99:2415,0,2415:0,0,26,51 +chrX 1594129 . G . . END=1594274 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1766 +chrX 1594275 . C T, 1949.04 . AS_QUALapprox=|1959|0;AS_VarDP=0|63|0;DP=64;QUALapprox=1959;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,63,0:63:99:1959,0,1959:0,0,34,29 +chrX 1594276 . C . . END=1595229 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,779 +chrX 1595230 . TGGGTCTGCACCGGACATGAGTGGTGAGC T, 3575.01 . AS_QUALapprox=|3585|0;AS_VarDP=0|80|0;DP=83;QUALapprox=3585;RAW_GT_COUNT=0,0,1;RAW_MQandDP=298800,83;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,80,0:80:99:3585,0,3585:0,0,39,41 +chrX 1595259 . G . . END=1595719 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1800 +chrX 1595720 . C T, 1677.04 . AS_QUALapprox=|1687|0;AS_VarDP=0|52|0;DP=55;QUALapprox=1687;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:1687,0,1687:0,0,22,30 +chrX 1595721 . C . . END=1596225 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1582 +chrX 1596226 . T TA, 1149.01 . AS_QUALapprox=|1159|0;AS_VarDP=2|56|0;BaseQRankSum=2.256;DP=74;MQRankSum=0.000;QUALapprox=1159;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;ReadPosRankSum=-0.576;VarDP=58 GT:AD:DP:GQ:PL:SB 1:2,56,0:58:99:1159,0,1188:1,1,33,23 +chrX 1596227 . A . . END=1596430 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1745 +chrX 1596431 . CTCCTCCTCCTCCTCCTCCATCCCTCCCACCCTCCTAGTGAGGTGGAT C, 1366.01 . AS_QUALapprox=|1376|0;AS_VarDP=4|34|0;BaseQRankSum=3.148;DP=56;MQRankSum=-0.430;QUALapprox=1376;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198869,56;ReadPosRankSum=-0.207;VarDP=38 GT:AD:DP:GQ:PL:SB 1:4,34,0:38:99:1376,0,1492:1,3,9,25 +chrX 1596479 . T . . END=1596538 GT:DP:GQ:MIN_DP:PL 0:37:99:37:0,315 +chrX 1596539 . C T, 1308.04 . AS_QUALapprox=|1318|0;AS_VarDP=3|30|0;BaseQRankSum=2.559;DP=36;MQRankSum=1.054;QUALapprox=1318;RAW_GT_COUNT=0,0,1;RAW_MQandDP=112737,36;ReadPosRankSum=0.291;VarDP=33 GT:AD:DP:GQ:PL:SB 1:3,30,0:33:99:1318,0,1349:1,2,6,24 +chrX 1596540 . C . . END=1596546 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,495 +chrX 1596547 . C A, 1053.04 . AS_QUALapprox=|1063|0;AS_VarDP=5|27|0;BaseQRankSum=1.257;DP=33;MQRankSum=2.367;QUALapprox=1063;RAW_GT_COUNT=0,0,1;RAW_MQandDP=101937,33;ReadPosRankSum=0.806;VarDP=32 GT:AD:DP:GQ:PL:SB 1:5,27,0:32:99:1063,0,1116:2,3,4,23 +chrX 1596548 . C . . END=1596731 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,180 +chrX 1596732 . G C, 33.04 . AS_QUALapprox=|43|0;AS_VarDP=0|4|0;DP=4;QUALapprox=43;RAW_GT_COUNT=0,0,1;RAW_MQandDP=5963,4;VarDP=4 GT:AD:DP:GQ:PL:SB 1:0,4,0:4:43:43,0,43:0,0,3,1 +chrX 1596733 . T . . END=1596742 GT:DP:GQ:MIN_DP:PL 0:4:45:4:0,45 +chrX 1596743 . C . . END=1596855 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1596856 . C . . END=1596891 GT:DP:GQ:MIN_DP:PL 0:2:35:1:0,35 +chrX 1596892 . G A, 412.04 . AS_QUALapprox=|422|0;AS_VarDP=1|14|0;BaseQRankSum=2.094;DP=18;MQRankSum=0.000;QUALapprox=422;RAW_GT_COUNT=0,0,1;RAW_MQandDP=59125,18;ReadPosRankSum=-1.519;VarDP=15 GT:AD:DP:GQ:PL:SB 1:1,14,0:15:99:422,0,432:0,1,9,5 +chrX 1596893 . T . . END=1597506 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1086 +chrX 1597507 . A G, 1716.04 . AS_QUALapprox=|1726|0;AS_VarDP=0|53|0;DP=55;QUALapprox=1726;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=53 GT:AD:DP:GQ:PL:SB 1:0,53,0:53:99:1726,0,1726:0,0,28,25 +chrX 1597508 . C . . END=1598377 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1315 +chrX 1598378 . C G, 2508.04 . AS_QUALapprox=|2518|0;AS_VarDP=0|78|0;DP=82;QUALapprox=2518;RAW_GT_COUNT=0,0,1;RAW_MQandDP=295200,82;VarDP=78 GT:AD:DP:GQ:PL:SB 1:0,78,0:78:99:2518,0,2518:0,0,33,45 +chrX 1598379 . C . . END=1599114 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1596 +chrX 1599115 . T G, 1696.04 . AS_QUALapprox=|1706|0;AS_VarDP=0|53|0;DP=55;QUALapprox=1706;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=53 GT:AD:DP:GQ:PL:SB 1:0,53,0:53:99:1706,0,1706:0,0,28,25 +chrX 1599116 . T . . END=1601003 GT:DP:GQ:MIN_DP:PL 0:65:63:54:0,63 +chrX 1601004 . C G, 105.04 . AS_QUALapprox=|115|0;AS_VarDP=34|39|0;BaseQRankSum=-1.141;DP=74;MQRankSum=0.000;QUALapprox=115;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;ReadPosRankSum=-1.515;VarDP=73 GT:AD:DP:GQ:PL:SB 1:34,39,0:73:99:115,0,1267:18,16,22,17 +chrX 1601005 . C . . END=1601927 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1725 +chrX 1601928 . C T, 214.04 . AS_QUALapprox=|224|0;AS_VarDP=23|28|0;BaseQRankSum=2.591;DP=54;MQRankSum=0.000;QUALapprox=224;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;ReadPosRankSum=-0.748;VarDP=51 GT:AD:DP:GQ:PL:SB 1:23,28,0:51:99:224,0,973:14,9,19,9 +chrX 1601929 . G . . END=1602269 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1662 +chrX 1602270 . T . . END=1602270 GT:DP:GQ:MIN_DP:PL 0:70:19:70:0,19 +chrX 1602271 . G . . END=1602821 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1479 +chrX 1602822 . C CT, 797.01 . AS_QUALapprox=|807|0;AS_VarDP=12|43|0;BaseQRankSum=-1.238;DP=71;MQRankSum=-0.723;QUALapprox=807;RAW_GT_COUNT=0,0,1;RAW_MQandDP=251481,71;ReadPosRankSum=-0.795;VarDP=55 GT:AD:DP:GQ:PL:SB 1:12,43,0:55:99:807,0,1112:4,8,27,16 +chrX 1602823 . T . . END=1602855 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1800 +chrX 1602856 . G C, 1354.04 . AS_QUALapprox=|1364|0;AS_VarDP=19|49|0;BaseQRankSum=-1.777;DP=69;MQRankSum=-1.075;QUALapprox=1364;RAW_GT_COUNT=0,0,1;RAW_MQandDP=246386,69;ReadPosRankSum=0.374;VarDP=68 GT:AD:DP:GQ:PL:SB 1:19,49,0:68:99:1364,0,2184:9,10,21,28 +chrX 1602857 . A G, 1354.04 . AS_QUALapprox=|1364|0;AS_VarDP=19|49|0;BaseQRankSum=-0.267;DP=70;MQRankSum=-1.075;QUALapprox=1364;RAW_GT_COUNT=0,0,1;RAW_MQandDP=249986,70;ReadPosRankSum=0.658;VarDP=68 GT:AD:DP:GQ:PL:SB 1:19,49,0:68:99:1364,0,2184:9,10,21,28 +chrX 1602858 . C . . END=1603064 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,149 +chrX 1603065 . T C, 2809.04 . AS_QUALapprox=|2819|0;AS_VarDP=0|76|0;DP=76;QUALapprox=2819;RAW_GT_COUNT=0,0,1;RAW_MQandDP=264307,76;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,76,0:76:99:2819,0,2819:0,0,38,38 +chrX 1603066 . G . . END=1603069 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1800 +chrX 1603070 . T C, 54.04 . AS_QUALapprox=|64|0;AS_VarDP=36|37|0;BaseQRankSum=1.450;DP=75;MQRankSum=0.508;QUALapprox=64;RAW_GT_COUNT=0,0,1;RAW_MQandDP=260707,75;ReadPosRankSum=-0.894;VarDP=73 GT:AD:DP:GQ:PL:SB 1:36,37,0:73:64:64,0,1184:19,17,19,18 +chrX 1603071 . G . . END=1603114 GT:DP:GQ:MIN_DP:PL 0:77:99:77:0,1800 +chrX 1603115 . G C, 45.04 . AS_QUALapprox=|55|0;AS_VarDP=42|43|0;BaseQRankSum=0.036;DP=89;MQRankSum=-0.442;QUALapprox=55;RAW_GT_COUNT=0,0,1;RAW_MQandDP=313898,89;ReadPosRankSum=0.448;VarDP=85 GT:AD:DP:GQ:PL:SB 1:42,43,0:85:55:55,0,1314:23,19,26,17 +chrX 1603116 . G . . END=1603153 GT:DP:GQ:MIN_DP:PL 0:83:99:83:0,1800 +chrX 1603154 . A G, 3107.04 . AS_QUALapprox=|3117|0;AS_VarDP=0|81|0;DP=85;QUALapprox=3117;RAW_GT_COUNT=0,0,1;RAW_MQandDP=306000,85;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,81,0:81:99:3117,0,3117:0,0,48,33 +chrX 1603155 . C . . END=1603161 GT:DP:GQ:MIN_DP:PL 0:78:99:78:0,1800 +chrX 1603162 . C T, 308.04 . AS_QUALapprox=|318|0;AS_VarDP=34|44|0;BaseQRankSum=-0.190;DP=83;MQRankSum=0.000;QUALapprox=318;RAW_GT_COUNT=0,0,1;RAW_MQandDP=298800,83;ReadPosRankSum=-2.006;VarDP=78 GT:AD:DP:GQ:PL:SB 1:34,44,0:78:99:318,0,1414:22,12,25,19 +chrX 1603163 . G . . END=1603299 GT:DP:GQ:MIN_DP:PL 0:81:99:81:0,1800 +chrX 1603300 . A G, 670.04 . AS_QUALapprox=|680|0;AS_VarDP=28|49|0;BaseQRankSum=-0.864;DP=83;MQRankSum=0.000;QUALapprox=680;RAW_GT_COUNT=0,0,1;RAW_MQandDP=298800,83;ReadPosRankSum=0.450;VarDP=77 GT:AD:DP:GQ:PL:SB 1:28,49,0:77:99:680,0,1583:13,15,21,28 +chrX 1603301 . C . . END=1603560 GT:DP:GQ:MIN_DP:PL 0:63:49:63:0,49 +chrX 1603561 . T C, 60.04 . AS_QUALapprox=|70|0;AS_VarDP=30|32|0;BaseQRankSum=1.102;DP=62;MQRankSum=-1.011;QUALapprox=70;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158014,62;ReadPosRankSum=-1.088;VarDP=62 GT:AD:DP:GQ:PL:SB 1:30,32,0:62:70:70,0,1420:14,16,20,12 +chrX 1603562 . G A, 60.04 . AS_QUALapprox=|70|0;AS_VarDP=30|32|0;BaseQRankSum=-1.470;DP=62;MQRankSum=-1.011;QUALapprox=70;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158014,62;ReadPosRankSum=-0.986;VarDP=62 GT:AD:DP:GQ:PL:SB 1:30,32,0:62:70:70,0,1420:14,16,20,12 +chrX 1603563 . C . . END=1603605 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1532 +chrX 1603606 . G C, 0.01 . AS_QUALapprox=|2|0;AS_VarDP=25|23|0;BaseQRankSum=2.942;DP=48;MQRankSum=0.569;QUALapprox=2;RAW_GT_COUNT=0,0,1;RAW_MQandDP=99987,48;ReadPosRankSum=0.713;VarDP=48 GT:AD:DP:GQ:PL:SB 1:25,23,0:48:2:2,0,1025:16,9,11,12 +chrX 1603607 . T . . END=1603612 GT:DP:GQ:MIN_DP:PL 0:46:99:46:0,1418 +chrX 1603613 . G A, 25.04 . AS_QUALapprox=|35|0;AS_VarDP=23|23|0;BaseQRankSum=1.370;DP=46;MQRankSum=0.676;QUALapprox=35;RAW_GT_COUNT=0,0,1;RAW_MQandDP=95138,46;ReadPosRankSum=-0.250;VarDP=46 GT:AD:DP:GQ:PL:SB 1:23,23,0:46:35:35,0,1024:14,9,10,13 +chrX 1603614 . G . . END=1603619 GT:DP:GQ:MIN_DP:PL 0:45:99:45:0,1414 +chrX 1603620 . T C, 130.04 . AS_QUALapprox=|140|0;AS_VarDP=21|24|0;BaseQRankSum=0.000;DP=45;MQRankSum=0.836;QUALapprox=140;RAW_GT_COUNT=0,0,1;RAW_MQandDP=94306,45;ReadPosRankSum=-1.972;VarDP=45 GT:AD:DP:GQ:PL:SB 1:21,24,0:45:99:140,0,1059:12,9,11,13 +chrX 1603621 . G . . END=1603627 GT:DP:GQ:MIN_DP:PL 0:41:99:41:0,1355 +chrX 1603628 . A G, 194.04 . AS_QUALapprox=|204|0;AS_VarDP=18|23|0;BaseQRankSum=0.637;DP=42;MQRankSum=1.359;QUALapprox=204;RAW_GT_COUNT=0,0,1;RAW_MQandDP=85406,42;ReadPosRankSum=-2.570;VarDP=41 GT:AD:DP:GQ:PL:SB 1:18,23,0:41:99:204,0,1014:10,8,11,12 +chrX 1603629 . C . . END=1603906 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,109 +chrX 1603907 . C A, 1051.04 . AS_QUALapprox=|1061|0;AS_VarDP=0|31|0;DP=33;QUALapprox=1061;RAW_GT_COUNT=0,0,1;RAW_MQandDP=112962,33;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1061,0,1061:0,0,17,14 +chrX 1603908 . A . . END=1604305 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,560 +chrX 1604306 . A G, 2290.04 . AS_QUALapprox=|2300|0;AS_VarDP=1|70|0;BaseQRankSum=-0.312;DP=72;MQRankSum=0.000;QUALapprox=2300;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;ReadPosRankSum=-1.660;VarDP=71 GT:AD:DP:GQ:PL:SB 1:1,70,0:71:99:2300,0,2335:1,0,39,31 +chrX 1604307 . A . . END=1604639 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1531 +chrX 1604640 . T TTCCC, 1818.01 . AS_QUALapprox=|1828|0;AS_VarDP=0|42|0;DP=55;QUALapprox=1828;RAW_GT_COUNT=0,0,1;RAW_MQandDP=197001,55;VarDP=42 GT:AD:DP:GQ:PL:SB 1:0,42,0:42:99:1828,0,1829:0,0,18,24 +chrX 1604641 . T . . END=1604912 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1428 +chrX 1604913 . G A, 59.04 . AS_QUALapprox=|69|0;AS_VarDP=34|36|0;BaseQRankSum=0.147;DP=71;MQRankSum=0.000;QUALapprox=69;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;ReadPosRankSum=-0.940;VarDP=70 GT:AD:DP:GQ:PL:SB 1:34,36,0:70:69:69,0,1160:15,19,16,20 +chrX 1604914 . G . . END=1605035 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1751 +chrX 1605036 . G A, 217.04 . AS_QUALapprox=|227|0;AS_VarDP=22|32|0;BaseQRankSum=-1.950;DP=58;MQRankSum=0.000;QUALapprox=227;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;ReadPosRankSum=-0.440;VarDP=54 GT:AD:DP:GQ:PL:SB 1:22,32,0:54:99:227,0,961:14,8,12,20 +chrX 1605037 . A . . END=1605224 GT:DP:GQ:MIN_DP:PL 0:48:51:41:0,51 +chrX 1605225 . C . . END=1605225 GT:DP:GQ:MIN_DP:PL 0:36:8:36:0,8 +chrX 1605226 . T . . END=1605526 GT:DP:GQ:MIN_DP:PL 0:36:42:35:0,42 +chrX 1605527 . G A, 111.04 . AS_QUALapprox=|121|0;AS_VarDP=26|26|0;BaseQRankSum=2.661;DP=54;MQRankSum=-0.962;QUALapprox=121;RAW_GT_COUNT=0,0,1;RAW_MQandDP=193300,54;ReadPosRankSum=0.550;VarDP=52 GT:AD:DP:GQ:PL:SB 1:26,26,0:52:99:121,0,854:19,7,11,15 +chrX 1605528 . G . . END=1605988 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1444 +chrX 1605989 . C T, 2052.04 . AS_QUALapprox=|2062|0;AS_VarDP=0|60|0;DP=60;QUALapprox=2062;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:2062,0,2062:0,0,26,34 +chrX 1605990 . T . . END=1606017 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1800 +chrX 1606018 . T A, 1927.04 . AS_QUALapprox=|1937|0;AS_VarDP=0|60|0;DP=61;QUALapprox=1937;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:1937,0,1937:0,0,31,29 +chrX 1606019 . A . . END=1606108 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1800 +chrX 1606109 . G A, 1925.04 . AS_QUALapprox=|1935|0;AS_VarDP=0|60|0;DP=60;QUALapprox=1935;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:1935,0,1935:0,0,34,26 +chrX 1606110 . T . . END=1606240 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1736 +chrX 1606241 . C G, 1815.04 . AS_QUALapprox=|1825|0;AS_VarDP=0|58|0;DP=62;QUALapprox=1825;RAW_GT_COUNT=0,0,1;RAW_MQandDP=222625,62;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,58,0:58:99:1825,0,1825:0,0,35,23 +chrX 1606242 . G . . END=1606815 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1429 +chrX 1606816 . T TA, 1054.01 . AS_QUALapprox=|1064|0;AS_VarDP=1|44|0;BaseQRankSum=-0.557;DP=50;MQRankSum=0.000;QUALapprox=1064;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;ReadPosRankSum=-0.655;VarDP=45 GT:AD:DP:GQ:PL:SB 1:1,44,0:45:99:1064,0,1090:0,1,30,14 +chrX 1606817 . A . . END=1606897 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1574 +chrX 1606898 . C T, 297.04 . AS_QUALapprox=|307|0;AS_VarDP=31|41|0;BaseQRankSum=-0.605;DP=76;MQRankSum=0.000;QUALapprox=307;RAW_GT_COUNT=0,0,1;RAW_MQandDP=273025,76;ReadPosRankSum=-2.110;VarDP=72 GT:AD:DP:GQ:PL:SB 1:31,41,0:72:99:307,0,1334:14,17,26,15 +chrX 1606899 . G . . END=1606939 GT:DP:GQ:MIN_DP:PL 0:73:99:73:0,1800 +chrX 1606940 . C G, 242.04 . AS_QUALapprox=|252|0;AS_VarDP=30|39|0;BaseQRankSum=-0.893;DP=70;MQRankSum=1.169;QUALapprox=252;RAW_GT_COUNT=0,0,1;RAW_MQandDP=251425,70;ReadPosRankSum=1.538;VarDP=69 GT:AD:DP:GQ:PL:SB 1:30,39,0:69:99:252,0,1225:12,18,24,15 +chrX 1606941 . C . . END=1606984 GT:DP:GQ:MIN_DP:PL 0:76:99:76:0,1800 +chrX 1606985 . C T, 749.04 . AS_QUALapprox=|759|0;AS_VarDP=31|49|0;BaseQRankSum=0.148;DP=80;MQRankSum=0.329;QUALapprox=759;RAW_GT_COUNT=0,0,1;RAW_MQandDP=284450,80;ReadPosRankSum=0.196;VarDP=80 GT:AD:DP:GQ:PL:SB 1:31,49,0:80:99:759,0,2141:11,20,28,21 +chrX 1606986 . G . . END=1606986 GT:DP:GQ:MIN_DP:PL 0:80:99:80:0,1800 +chrX 1606987 . T C, 749.04 . AS_QUALapprox=|759|0;AS_VarDP=31|49|0;BaseQRankSum=-2.650;DP=81;MQRankSum=0.329;QUALapprox=759;RAW_GT_COUNT=0,0,1;RAW_MQandDP=288050,81;ReadPosRankSum=0.040;VarDP=80 GT:AD:DP:GQ:PL:SB 1:31,49,0:80:99:759,0,2141:11,20,28,21 +chrX 1606988 . G . . END=1607626 GT:DP:GQ:MIN_DP:PL 0:74:99:74:0,352 +chrX 1607627 . G C, 2182.04 . AS_QUALapprox=|2192|0;AS_VarDP=0|69|0;DP=76;QUALapprox=2192;RAW_GT_COUNT=0,0,1;RAW_MQandDP=271634,76;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,69,0:69:99:2192,0,2192:0,0,36,33 +chrX 1607628 . T . . END=1607878 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1785 +chrX 1607879 . G A, 218.04 . AS_QUALapprox=|228|0;AS_VarDP=28|34|0;BaseQRankSum=0.010;DP=63;MQRankSum=-3.255;QUALapprox=228;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201054,63;ReadPosRankSum=-0.340;VarDP=62 GT:AD:DP:GQ:PL:SB 1:28,34,0:62:99:228,0,1376:16,12,18,16 +chrX 1607880 . T . . END=1607900 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1582 +chrX 1607901 . G T, 90.04 . AS_QUALapprox=|100|0;AS_VarDP=25|27|0;BaseQRankSum=0.261;DP=56;MQRankSum=-4.233;QUALapprox=100;RAW_GT_COUNT=0,0,1;RAW_MQandDP=163854,56;ReadPosRankSum=1.188;VarDP=52 GT:AD:DP:GQ:PL:SB 1:25,27,0:52:99:100,0,1163:12,13,16,11 +chrX 1607902 . G . . END=1608007 GT:DP:GQ:MIN_DP:PL 0:65:23:53:0,23 +chrX 1608008 . C T, 317.04 . AS_QUALapprox=|327|0;AS_VarDP=39|46|0;BaseQRankSum=1.455;DP=85;MQRankSum=-5.357;QUALapprox=327;RAW_GT_COUNT=0,0,1;RAW_MQandDP=265152,85;ReadPosRankSum=-2.000;VarDP=85 GT:AD:DP:GQ:PL:SB 1:39,46,0:85:99:327,0,2029:22,17,22,24 +chrX 1608009 . G . . END=1608019 GT:DP:GQ:MIN_DP:PL 0:85:99:85:0,1800 +chrX 1608020 . G A, 302.04 . AS_QUALapprox=|312|0;AS_VarDP=40|46|0;BaseQRankSum=2.709;DP=86;MQRankSum=-5.268;QUALapprox=312;RAW_GT_COUNT=0,0,1;RAW_MQandDP=270752,86;ReadPosRankSum=-1.521;VarDP=86 GT:AD:DP:GQ:PL:SB 1:40,46,0:86:99:312,0,2039:23,17,22,24 +chrX 1608021 . G . . END=1608050 GT:DP:GQ:MIN_DP:PL 0:84:99:84:0,1800 +chrX 1608051 . C T, 267.04 . AS_QUALapprox=|277|0;AS_VarDP=38|45|0;BaseQRankSum=1.472;DP=86;MQRankSum=-3.563;QUALapprox=277;RAW_GT_COUNT=0,0,1;RAW_MQandDP=286752,86;ReadPosRankSum=0.489;VarDP=83 GT:AD:DP:GQ:PL:SB 1:38,45,0:83:99:277,0,1487:23,15,21,24 +chrX 1608052 . G . . END=1608109 GT:DP:GQ:MIN_DP:PL 0:80:99:80:0,1800 +chrX 1608110 . A G, 128.04 . AS_QUALapprox=|138|0;AS_VarDP=32|38|0;BaseQRankSum=-2.206;DP=70;MQRankSum=-2.319;QUALapprox=138;RAW_GT_COUNT=0,0,1;RAW_MQandDP=246319,70;ReadPosRankSum=1.386;VarDP=70 GT:AD:DP:GQ:PL:SB 1:32,38,0:70:99:138,0,1240:17,15,14,24 +chrX 1608111 . T . . END=1608318 GT:DP:GQ:MIN_DP:PL 0:80:99:80:0,1800 +chrX 1608319 . A G, 221.04 . AS_QUALapprox=|231|0;AS_VarDP=30|42|0;BaseQRankSum=-3.717;DP=72;MQRankSum=0.000;QUALapprox=231;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;ReadPosRankSum=-1.303;VarDP=72 GT:AD:DP:GQ:PL:SB 1:30,42,0:72:99:231,0,1264:9,21,20,22 +chrX 1608320 . T . . END=1608431 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1800 +chrX 1608432 . A G, 728.04 . AS_QUALapprox=|738|0;AS_VarDP=21|45|0;BaseQRankSum=-1.490;DP=71;MQRankSum=0.000;QUALapprox=738;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;ReadPosRankSum=-1.136;VarDP=66 GT:AD:DP:GQ:PL:SB 1:21,45,0:66:99:738,0,1418:12,9,26,19 +chrX 1608433 . A . . END=1608445 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1800 +chrX 1608446 . T C, 817.04 . AS_QUALapprox=|827|0;AS_VarDP=23|44|0;BaseQRankSum=-1.403;DP=67;MQRankSum=0.000;QUALapprox=827;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;ReadPosRankSum=-0.539;VarDP=67 GT:AD:DP:GQ:PL:SB 1:23,44,0:67:99:827,0,1849:15,8,26,18 +chrX 1608447 . G . . END=1608454 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1800 +chrX 1608455 . G T, 760.04 . AS_QUALapprox=|770|0;AS_VarDP=23|41|0;BaseQRankSum=0.766;DP=65;MQRankSum=0.000;QUALapprox=770;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;ReadPosRankSum=0.252;VarDP=64 GT:AD:DP:GQ:PL:SB 1:23,41,0:64:99:770,0,1792:14,9,26,15 +chrX 1608456 . C . . END=1608471 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1800 +chrX 1608472 . C T, 606.04 . AS_QUALapprox=|616|0;AS_VarDP=20|38|0;BaseQRankSum=0.286;DP=59;MQRankSum=0.000;QUALapprox=616;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;ReadPosRankSum=0.818;VarDP=58 GT:AD:DP:GQ:PL:SB 1:20,38,0:58:99:616,0,1291:11,9,25,13 +chrX 1608473 . T . . END=1608576 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1800 +chrX 1608577 . A G, 361.04 . AS_QUALapprox=|371|0;AS_VarDP=29|43|0;BaseQRankSum=-2.041;DP=75;MQRankSum=0.000;QUALapprox=371;RAW_GT_COUNT=0,0,1;RAW_MQandDP=270000,75;ReadPosRankSum=-0.856;VarDP=72 GT:AD:DP:GQ:PL:SB 1:29,43,0:72:99:371,0,1314:17,12,24,19 +chrX 1608578 . C . . END=1608618 GT:DP:GQ:MIN_DP:PL 0:74:99:74:0,1800 +chrX 1608619 . G A, 220.04 . AS_QUALapprox=|230|0;AS_VarDP=36|43|0;BaseQRankSum=-0.331;DP=82;MQRankSum=0.000;QUALapprox=230;RAW_GT_COUNT=0,0,1;RAW_MQandDP=295200,82;ReadPosRankSum=0.364;VarDP=79 GT:AD:DP:GQ:PL:SB 1:36,43,0:79:99:230,0,1395:20,16,22,21 +chrX 1608620 . G . . END=1608725 GT:DP:GQ:MIN_DP:PL 0:81:99:81:0,1800 +chrX 1608726 . TTGTCCAGGC T, 3000.01 . AS_QUALapprox=|3010|0;AS_VarDP=0|68|0;DP=75;QUALapprox=3010;RAW_GT_COUNT=0,0,1;RAW_MQandDP=270000,75;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,68,0:68:99:3010,0,3010:0,0,28,40 +chrX 1608736 . T . . END=1608757 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1800 +chrX 1608758 . C T, 148.04 . AS_QUALapprox=|158|0;AS_VarDP=30|35|0;BaseQRankSum=0.221;DP=67;MQRankSum=0.000;QUALapprox=158;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;ReadPosRankSum=-0.296;VarDP=65 GT:AD:DP:GQ:PL:SB 1:30,35,0:65:99:158,0,1151:11,19,16,19 +chrX 1608759 . G . . END=1608767 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1800 +chrX 1608768 . A G, 2322.04 . AS_QUALapprox=|2332|0;AS_VarDP=0|61|0;DP=64;QUALapprox=2332;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,61,0:61:99:2332,0,2332:0,0,24,37 +chrX 1608769 . G . . END=1609443 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,983 +chrX 1609444 . T G, 1897.04 . AS_QUALapprox=|1907|0;AS_VarDP=0|57|0;DP=59;QUALapprox=1907;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:1907,0,1907:0,0,28,29 +chrX 1609445 . A . . END=1609501 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1781 +chrX 1609502 . G C, 2324.04 . AS_QUALapprox=|2334|0;AS_VarDP=0|60|0;DP=63;QUALapprox=2334;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:2334,0,2334:0,0,24,36 +chrX 1609503 . C . . END=1609513 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1736 +chrX 1609514 . C T, 263.04 . AS_QUALapprox=|273|0;AS_VarDP=27|36|0;BaseQRankSum=-0.598;DP=66;MQRankSum=0.000;QUALapprox=273;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;ReadPosRankSum=-0.445;VarDP=63 GT:AD:DP:GQ:PL:SB 1:27,36,0:63:99:273,0,1161:10,17,15,21 +chrX 1609515 . G . . END=1609557 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1800 +chrX 1609558 . C CCTT, 541.01 . AS_QUALapprox=|551|0;AS_VarDP=23|35|0;BaseQRankSum=-1.384;DP=60;MQRankSum=-1.408;QUALapprox=551;RAW_GT_COUNT=0,0,1;RAW_MQandDP=209683,60;ReadPosRankSum=-1.185;VarDP=58 GT:AD:DP:GQ:PL:SB 1:23,35,0:58:99:551,0,1575:9,14,16,19 +chrX 1609559 . C . . END=1609572 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1800 +chrX 1609573 . C G, 3047.04 . AS_QUALapprox=|3057|0;AS_VarDP=0|70|0;DP=71;QUALapprox=3057;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241607,71;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,70,0:70:99:3057,0,3057:0,0,25,45 +chrX 1609574 . C . . END=1609596 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1800 +chrX 1609597 . T C, 2843.04 . AS_QUALapprox=|2853|0;AS_VarDP=0|65|0;DP=66;QUALapprox=2853;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223607,66;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,65,0:65:99:2853,0,2853:0,0,22,43 +chrX 1609598 . C . . END=1609731 GT:DP:GQ:MIN_DP:PL 0:45:99:45:0,278 +chrX 1609732 . G C, 89.04 . AS_QUALapprox=|99|0;AS_VarDP=8|11|0;BaseQRankSum=2.083;DP=23;MQRankSum=-1.452;QUALapprox=99;RAW_GT_COUNT=0,0,1;RAW_MQandDP=72457,23;ReadPosRankSum=-1.738;VarDP=19 GT:AD:DP:GQ:PL:SB 1:8,11,0:19:99:99,0,459:4,4,6,5 +chrX 1609733 . T . . END=1609737 GT:DP:GQ:MIN_DP:PL 0:18:99:18:0,535 +chrX 1609738 . C . . END=1609738 GT:DP:GQ:MIN_DP:PL 0:20:0:20:0,0 +chrX 1609739 . C . . END=1609751 GT:DP:GQ:MIN_DP:PL 0:18:99:18:0,427 +chrX 1609752 . A . . END=1609753 GT:DP:GQ:MIN_DP:PL 0:20:0:20:0,0 +chrX 1609754 . C . . END=1610003 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,307 +chrX 1610004 . C G, 129.04 . AS_QUALapprox=|139|0;AS_VarDP=20|24|0;BaseQRankSum=-1.448;DP=46;MQRankSum=0.000;QUALapprox=139;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;ReadPosRankSum=0.000;VarDP=44 GT:AD:DP:GQ:PL:SB 1:20,24,0:44:99:139,0,1028:13,7,10,14 +chrX 1610005 . C . . END=1610017 GT:DP:GQ:MIN_DP:PL 0:42:99:42:0,900 +chrX 1610018 . T . . END=1610033 GT:DP:GQ:MIN_DP:PL 0:46:0:46:0,0 +chrX 1610034 . G . . END=1610034 GT:DP:GQ:MIN_DP:PL 0:51:23:51:0,23 +chrX 1610035 . G . . END=1610035 GT:DP:GQ:MIN_DP:PL 0:47:0:47:0,0 +chrX 1610036 . C . . END=1610037 GT:DP:GQ:MIN_DP:PL 0:53:53:53:0,53 +chrX 1610038 . G . . END=1610038 GT:DP:GQ:MIN_DP:PL 0:52:0:52:0,0 +chrX 1610039 . C . . END=1610079 GT:DP:GQ:MIN_DP:PL 0:61:43:61:0,43 +chrX 1610080 . C T, 491.04 . AS_QUALapprox=|1592|0;AS_VarDP=2|38|0;BaseQRankSum=2.108;DP=65;MQRankSum=0.000;QUALapprox=1592;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;ReadPosRankSum=0.933;VarDP=40 GT:AD:DP:GQ:PL:SB 1:2,38,0:40:99:1592,0,1606:1,1,19,15 +chrX 1610081 . C . . END=1610083 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,226 +chrX 1610084 . T C, 447.04 . AS_QUALapprox=|1745|0;AS_VarDP=0|41|0;DP=67;QUALapprox=1745;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=41 GT:AD:DP:GQ:PL:SB 1:0,41,0:41:99:1745,0,1637:0,0,19,15 +chrX 1610085 . T . . END=1610101 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1800 +chrX 1610102 . G A, 2769.04 . AS_QUALapprox=|2779|0;AS_VarDP=1|65|0;BaseQRankSum=1.842;DP=69;MQRankSum=0.000;QUALapprox=2779;RAW_GT_COUNT=0,0,1;RAW_MQandDP=245241,69;ReadPosRankSum=1.348;VarDP=66 GT:AD:DP:GQ:PL:SB 1:1,65,0:66:99:2779,0,2793:0,1,29,36 +chrX 1610103 . T . . END=1610166 GT:DP:GQ:MIN_DP:PL 0:74:99:74:0,1800 +chrX 1610167 . C T, 214.04 . AS_QUALapprox=|224|0;AS_VarDP=36|43|0;BaseQRankSum=0.157;DP=83;MQRankSum=0.000;QUALapprox=224;RAW_GT_COUNT=0,0,1;RAW_MQandDP=298800,83;ReadPosRankSum=-0.287;VarDP=79 GT:AD:DP:GQ:PL:SB 1:36,43,0:79:99:224,0,1772:16,20,23,20 +chrX 1610168 . G . . END=1610193 GT:DP:GQ:MIN_DP:PL 0:79:99:79:0,1800 +chrX 1610194 . T A, 71.04 . AS_QUALapprox=|81|0;AS_VarDP=37|39|0;BaseQRankSum=2.005;DP=79;MQRankSum=0.000;QUALapprox=81;RAW_GT_COUNT=0,0,1;RAW_MQandDP=284400,79;ReadPosRankSum=-0.156;VarDP=76 GT:AD:DP:GQ:PL:SB 1:37,39,0:76:81:81,0,1662:18,19,20,19 +chrX 1610195 . A . . END=1610270 GT:DP:GQ:MIN_DP:PL 0:83:99:83:0,1800 +chrX 1610271 . C T, 2595.04 . AS_QUALapprox=|2605|0;AS_VarDP=2|82|0;BaseQRankSum=1.357;DP=86;MQRankSum=0.000;QUALapprox=2605;RAW_GT_COUNT=0,0,1;RAW_MQandDP=309600,86;ReadPosRankSum=0.881;VarDP=84 GT:AD:DP:GQ:PL:SB 1:2,82,0:84:99:2605,0,2650:2,0,34,48 +chrX 1610272 . T . . END=1610523 GT:DP:GQ:MIN_DP:PL 0:73:99:73:0,1304 +chrX 1610524 . G A, 1523.04 . AS_QUALapprox=|2152|0;AS_VarDP=0|51|0;DP=55;QUALapprox=2152;RAW_GT_COUNT=0,0,1;RAW_MQandDP=188613,55;VarDP=51 GT:AD:DP:GQ:PL:SB 1:0,51,0:51:99:2152,0,1890:0,0,23,14 +chrX 1610525 . C . . END=1610526 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,1345 +chrX 1610527 . T C, 1570.04 . AS_QUALapprox=|2177|0;AS_VarDP=0|52|0;DP=55;QUALapprox=2177;RAW_GT_COUNT=0,0,1;RAW_MQandDP=186613,55;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:2177,0,1925:0,0,24,14 +chrX 1610528 . C . . END=1610535 GT:DP:GQ:MIN_DP:PL 0:45:99:45:0,1074 +chrX 1610536 . G A, 1574.04 . AS_QUALapprox=|2080|0;AS_VarDP=0|49|0;DP=52;QUALapprox=2080;RAW_GT_COUNT=0,0,1;RAW_MQandDP=175813,52;VarDP=49 GT:AD:DP:GQ:PL:SB 1:0,49,0:49:99:2080,0,1876:0,0,24,14 +chrX 1610537 . C . . END=1610557 GT:DP:GQ:MIN_DP:PL 0:42:99:42:0,765 +chrX 1610558 . T TCCCCTGCCCCTACTCCAGCCAAGCCCCCAGGTCACTCCTACTCCAGCCAAACCTCCAGGCCA, 1855.01 . AS_QUALapprox=|1865|0;AS_VarDP=0|49|0;DP=71;QUALapprox=1865;RAW_GT_COUNT=0,0,1;RAW_MQandDP=242294,71;VarDP=49 GT:AD:DP:GQ:PL:SB 1:0,49,0:49:99:1865,0,2406:0,0,24,25 +chrX 1610559 . C . . END=1610993 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,884 +chrX 1610994 . G A, 1841.04 . AS_QUALapprox=|1851|0;AS_VarDP=0|56|0;DP=59;QUALapprox=1851;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,56,0:56:99:1851,0,1851:0,0,27,29 +chrX 1610995 . G . . END=1611316 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1513 +chrX 1611317 . T C, 1886.04 . AS_QUALapprox=|1896|0;AS_VarDP=0|57|0;DP=59;QUALapprox=1896;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:1896,0,1896:0,0,32,25 +chrX 1611318 . A . . END=1611352 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1767 +chrX 1611353 . G C, 2109.04 . AS_QUALapprox=|2119|0;AS_VarDP=0|64|0;DP=65;QUALapprox=2119;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,64,0:64:99:2119,0,2119:0,0,37,27 +chrX 1611354 . C . . END=1611377 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1800 +chrX 1611378 . A G, 2018.04 . AS_QUALapprox=|2028|0;AS_VarDP=0|66|0;DP=69;QUALapprox=2028;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=66 GT:AD:DP:GQ:PL:SB 1:0,66,0:66:99:2028,0,2028:0,0,37,29 +chrX 1611379 . G . . END=1611443 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1800 +chrX 1611444 . T C, 2202.04 . AS_QUALapprox=|2212|0;AS_VarDP=0|70|0;DP=71;QUALapprox=2212;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,70,0:70:99:2212,0,2212:0,0,32,38 +chrX 1611445 . T . . END=1611573 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1626 +chrX 1611574 . C T, 2008.04 . AS_QUALapprox=|2018|0;AS_VarDP=0|46|0;DP=46;QUALapprox=2018;RAW_GT_COUNT=0,0,1;RAW_MQandDP=150509,46;VarDP=46 GT:AD:DP:GQ:PL:SB 1:0,46,0:46:99:2018,0,2018:0,0,16,30 +chrX 1611575 . G . . END=1611583 GT:DP:GQ:MIN_DP:PL 0:44:99:44:0,1450 +chrX 1611584 . C T, 1905.04 . AS_QUALapprox=|1915|0;AS_VarDP=0|43|0;DP=43;QUALapprox=1915;RAW_GT_COUNT=0,0,1;RAW_MQandDP=139709,43;VarDP=43 GT:AD:DP:GQ:PL:SB 1:0,43,0:43:99:1915,0,1915:0,0,15,28 +chrX 1611585 . T . . END=1611588 GT:DP:GQ:MIN_DP:PL 0:40:99:40:0,1361 +chrX 1611589 . T G, 1790.04 . AS_QUALapprox=|1800|0;AS_VarDP=0|40|0;DP=40;QUALapprox=1800;RAW_GT_COUNT=0,0,1;RAW_MQandDP=128909,40;VarDP=40 GT:AD:DP:GQ:PL:SB 1:0,40,0:40:99:1800,0,1800:0,0,14,26 +chrX 1611590 . G . . END=1611623 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,724 +chrX 1611624 . T G, 718.04 . AS_QUALapprox=|728|0;AS_VarDP=0|22|0;DP=24;QUALapprox=728;RAW_GT_COUNT=0,0,1;RAW_MQandDP=69309,24;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:728,0,728:0,0,9,13 +chrX 1611625 . C . . END=1611700 GT:DP:GQ:MIN_DP:PL 0:16:45:16:0,45 +chrX 1611701 . C T, 59.04 . AS_QUALapprox=|69|0;AS_VarDP=0|2|0;DP=2;QUALapprox=69;RAW_GT_COUNT=0,0,1;RAW_MQandDP=5200,2;VarDP=2 GT:AD:DP:GQ:PL:SB 1:0,2,0:2:69:69,0,69:0,0,1,1 +chrX 1611702 . G . . END=1611711 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1611712 . T C, 35.04 . AS_QUALapprox=|45|0;AS_VarDP=0|0|0;DP=1;QUALapprox=45;RAW_GT_COUNT=0,0,1;RAW_MQandDP=1600,1;VarDP=1 GT:AD:DP:GQ:PL:SB 1:0,1,0:1:45:45,0,45:0,0,1,0 +chrX 1611713 . G . . END=1611718 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 1611719 . A . . END=1611719 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1611720 . C . . END=1611721 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1611722 . G A, 34.04 . AS_QUALapprox=|44|0;AS_VarDP=0|0|0;DP=1;QUALapprox=44;RAW_GT_COUNT=0,0,1;RAW_MQandDP=1600,1;VarDP=1 GT:AD:DP:GQ:PL:SB 1:0,1,0:1:44:44,0,44:0,0,1,0 +chrX 1611723 . A . . END=1611724 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1611725 . A G, 34.04 . AS_QUALapprox=|44|0;AS_VarDP=0|0|0;DP=1;QUALapprox=44;RAW_GT_COUNT=0,0,1;RAW_MQandDP=1600,1;VarDP=1 GT:AD:DP:GQ:PL:SB 1:0,1,0:1:44:44,0,44:0,0,1,0 +chrX 1611726 . A . . END=1611737 GT:DP:GQ:MIN_DP:PL 0:2:35:1:0,35 +chrX 1611738 . A . . END=1611950 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1611951 . T . . END=1611951 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 1611952 . G . . END=1611956 GT:DP:GQ:MIN_DP:PL 0:4:0:4:0,0 +chrX 1611957 . A . . END=1611970 GT:DP:GQ:MIN_DP:PL 0:9:99:9:0,174 +chrX 1611971 . T C, 326.04 . AS_QUALapprox=|336|0;AS_VarDP=0|10|0;DP=12;QUALapprox=336;RAW_GT_COUNT=0,0,1;RAW_MQandDP=36638,12;VarDP=10 GT:AD:DP:GQ:PL:SB 1:0,10,0:10:99:336,0,336:0,0,7,3 +chrX 1611972 . C . . END=1612061 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,522 +chrX 1612062 . C T, 1315.04 . AS_QUALapprox=|1325|0;AS_VarDP=1|43|0;BaseQRankSum=2.174;DP=44;MQRankSum=-1.133;QUALapprox=1325;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100815,44;ReadPosRankSum=0.631;VarDP=44 GT:AD:DP:GQ:PL:SB 1:1,43,0:44:99:1325,0,1334:1,0,25,18 +chrX 1612063 . G . . END=1612102 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,1398 +chrX 1612103 . C T, 2045.04 . AS_QUALapprox=|2055|0;AS_VarDP=0|51|0;DP=53;QUALapprox=2055;RAW_GT_COUNT=0,0,1;RAW_MQandDP=128940,53;VarDP=51 GT:AD:DP:GQ:PL:SB 1:0,51,0:51:99:2055,0,2055:0,0,28,23 +chrX 1612104 . G . . END=1612126 GT:DP:GQ:MIN_DP:PL 0:45:99:45:0,1276 +chrX 1612127 . A G, 1894.04 . AS_QUALapprox=|1904|0;AS_VarDP=0|43|0;DP=44;QUALapprox=1904;RAW_GT_COUNT=0,0,1;RAW_MQandDP=109572,44;VarDP=43 GT:AD:DP:GQ:PL:SB 1:0,43,0:43:99:1904,0,1904:0,0,21,22 +chrX 1612128 . T A, 1894.04 . AS_QUALapprox=|1904|0;AS_VarDP=0|43|0;DP=45;QUALapprox=1904;RAW_GT_COUNT=0,0,1;RAW_MQandDP=113053,45;VarDP=43 GT:AD:DP:GQ:PL:SB 1:0,43,0:43:99:1904,0,1904:0,0,21,22 +chrX 1612129 . T . . END=1612178 GT:DP:GQ:MIN_DP:PL 0:40:99:40:0,1142 +chrX 1612179 . G C, 1272.04 . AS_QUALapprox=|1282|0;AS_VarDP=0|43|0;DP=50;QUALapprox=1282;RAW_GT_COUNT=0,0,1;RAW_MQandDP=155709,50;VarDP=43 GT:AD:DP:GQ:PL:SB 1:0,43,0:43:99:1282,0,1282:0,0,18,25 +chrX 1612180 . G . . END=1612284 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1320 +chrX 1612285 . CAA C, 1331.90 . AS_QUALapprox=|1342|0;AS_VarDP=0|38|0;DP=51;QUALapprox=1342;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180916,51;VarDP=38 GT:AD:DP:GQ:PL:SB 1:0,38,0:38:99:1342,0,1343:0,0,19,18 +chrX 1612288 . A . . END=1613175 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1262 +chrX 1613176 . C CTTCT, 1902.01 . AS_QUALapprox=|1912|0;AS_VarDP=0|45|0;DP=63;QUALapprox=1912;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=45 GT:AD:DP:GQ:PL:SB 1:0,45,0:45:99:1912,0,1913:0,0,18,27 +chrX 1613177 . T . . END=1615771 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,228 +chrX 1615772 . C A, 1811.04 . AS_QUALapprox=|1821|0;AS_VarDP=0|56|0;DP=58;QUALapprox=1821;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208225,58;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,56,0:56:99:1821,0,1821:0,0,21,35 +chrX 1615773 . G . . END=1615846 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,1345 +chrX 1615847 . G A, 180.04 . AS_QUALapprox=|190|0;AS_VarDP=19|25|0;BaseQRankSum=0.443;DP=44;MQRankSum=0.000;QUALapprox=190;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158400,44;ReadPosRankSum=0.190;VarDP=44 GT:AD:DP:GQ:PL:SB 1:19,25,0:44:99:190,0,819:12,7,10,15 +chrX 1615848 . A . . END=1617972 GT:DP:GQ:MIN_DP:PL 0:64:70:64:0,70 +chrX 1617973 . T C, 129.04 . AS_QUALapprox=|139|0;AS_VarDP=31|36|0;BaseQRankSum=0.214;DP=67;MQRankSum=0.000;QUALapprox=139;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;ReadPosRankSum=-0.453;VarDP=67 GT:AD:DP:GQ:PL:SB 1:31,36,0:67:99:139,0,1186:18,13,20,16 +chrX 1617974 . T . . END=1619548 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,144 +chrX 1619549 . TATAATA T,TATAATAATA, 691.01 . AS_QUALapprox=|500|701|0;AS_VarDP=0|14|17|0;DP=58;QUALapprox=701;RAW_GT_COUNT=0,0,1;RAW_MQandDP=206800,58;VarDP=31 GT:AD:DP:GQ:PL:SB 2:0,14,17,0:31:99:701,201,0,755:0,0,14,17 +chrX 1619556 . A . . END=1620926 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,521 +chrX 1620927 . C CA, 968.01 . AS_QUALapprox=|978|0;AS_VarDP=1|36|0;BaseQRankSum=-0.261;DP=43;MQRankSum=0.000;QUALapprox=978;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154800,43;ReadPosRankSum=0.984;VarDP=37 GT:AD:DP:GQ:PL:SB 1:1,36,0:37:99:978,0,1006:1,0,15,21 +chrX 1620928 . A . . END=1621036 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1444 +chrX 1621037 . C A, 135.04 . AS_QUALapprox=|145|0;AS_VarDP=23|28|0;BaseQRankSum=-0.638;DP=53;MQRankSum=0.000;QUALapprox=145;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;ReadPosRankSum=1.534;VarDP=51 GT:AD:DP:GQ:PL:SB 1:23,28,0:51:99:145,0,903:12,11,11,17 +chrX 1621038 . G . . END=1621892 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,887 +chrX 1621893 . G C, 1314.04 . AS_QUALapprox=|1324|0;AS_VarDP=0|41|0;DP=47;QUALapprox=1324;RAW_GT_COUNT=0,0,1;RAW_MQandDP=168274,47;VarDP=41 GT:AD:DP:GQ:PL:SB 1:0,41,0:41:99:1324,0,1674:0,0,19,22 +chrX 1621894 . C . . END=1622287 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1096 +chrX 1622288 . G A, 173.04 . AS_QUALapprox=|183|0;AS_VarDP=28|33|0;BaseQRankSum=0.738;DP=62;MQRankSum=1.119;QUALapprox=183;RAW_GT_COUNT=0,0,1;RAW_MQandDP=222516,62;ReadPosRankSum=0.601;VarDP=61 GT:AD:DP:GQ:PL:SB 1:28,33,0:61:99:183,0,1006:14,14,14,19 +chrX 1622289 . G . . END=1622949 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1554 +chrX 1622950 . T A, 109.04 . AS_QUALapprox=|119|0;AS_VarDP=35|38|0;BaseQRankSum=0.769;DP=78;MQRankSum=0.000;QUALapprox=119;RAW_GT_COUNT=0,0,1;RAW_MQandDP=280800,78;ReadPosRankSum=-1.066;VarDP=73 GT:AD:DP:GQ:PL:SB 1:35,38,0:73:99:119,0,1254:21,14,23,15 +chrX 1622951 . A . . END=1623053 GT:DP:GQ:MIN_DP:PL 0:80:99:80:0,1800 +chrX 1623054 . T C, 358.04 . AS_QUALapprox=|368|0;AS_VarDP=32|43|0;BaseQRankSum=0.262;DP=75;MQRankSum=0.000;QUALapprox=368;RAW_GT_COUNT=0,0,1;RAW_MQandDP=270000,75;ReadPosRankSum=0.509;VarDP=75 GT:AD:DP:GQ:PL:SB 1:32,43,0:75:99:368,0,1354:20,12,30,13 +chrX 1623055 . A . . END=1623439 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1797 +chrX 1623440 . A T, 156.04 . AS_QUALapprox=|166|0;AS_VarDP=32|39|0;BaseQRankSum=-1.687;DP=72;MQRankSum=0.000;QUALapprox=166;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;ReadPosRankSum=0.931;VarDP=71 GT:AD:DP:GQ:PL:SB 1:32,39,0:71:99:166,0,1223:18,14,21,18 +chrX 1623441 . T . . END=1623743 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,1399 +chrX 1623744 . A G, 174.04 . AS_QUALapprox=|184|0;AS_VarDP=20|25|0;BaseQRankSum=0.782;DP=48;MQRankSum=0.000;QUALapprox=184;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;ReadPosRankSum=1.897;VarDP=45 GT:AD:DP:GQ:PL:SB 1:20,25,0:45:99:184,0,819:8,12,12,13 +chrX 1623745 . T . . END=1624015 GT:DP:GQ:MIN_DP:PL 0:49:34:49:0,34 +chrX 1624016 . G A, 163.04 . AS_QUALapprox=|173|0;AS_VarDP=24|30|0;BaseQRankSum=-0.349;DP=55;MQRankSum=0.000;QUALapprox=173;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;ReadPosRankSum=-0.732;VarDP=54 GT:AD:DP:GQ:PL:SB 1:24,30,0:54:99:173,0,968:13,11,14,16 +chrX 1624017 . T . . END=1625029 GT:DP:GQ:MIN_DP:PL 0:38:99:38:0,234 +chrX 1625030 . G C, 383.04 . AS_QUALapprox=|393|0;AS_VarDP=27|36|0;BaseQRankSum=2.993;DP=65;MQRankSum=0.000;QUALapprox=393;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;ReadPosRankSum=-1.313;VarDP=63 GT:AD:DP:GQ:PL:SB 1:27,36,0:63:99:393,0,1608:7,20,14,22 +chrX 1625031 . C . . END=1625036 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1800 +chrX 1625037 . G T, 315.04 . AS_QUALapprox=|325|0;AS_VarDP=29|36|0;BaseQRankSum=2.867;DP=66;MQRankSum=0.000;QUALapprox=325;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;ReadPosRankSum=-1.314;VarDP=65 GT:AD:DP:GQ:PL:SB 1:29,36,0:65:99:325,0,1610:7,22,15,21 +chrX 1625038 . C . . END=1625103 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1578 +chrX 1625104 . C CTT, 172.01 . AS_QUALapprox=|182|0;AS_VarDP=23|25|0;BaseQRankSum=-2.116;DP=50;MQRankSum=-1.672;QUALapprox=182;RAW_GT_COUNT=0,0,1;RAW_MQandDP=174590,50;ReadPosRankSum=2.354;VarDP=48 GT:AD:DP:GQ:PL:SB 1:23,25,0:48:99:182,0,1066:6,17,15,10 +chrX 1625105 . T . . END=1625107 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,1080 +chrX 1625108 . C T, 181.04 . AS_QUALapprox=|191|0;AS_VarDP=23|26|0;BaseQRankSum=-1.890;DP=49;MQRankSum=-1.919;QUALapprox=191;RAW_GT_COUNT=0,0,1;RAW_MQandDP=168990,49;ReadPosRankSum=2.199;VarDP=49 GT:AD:DP:GQ:PL:SB 1:23,26,0:49:99:191,0,1074:6,17,15,11 +chrX 1625109 . T . . END=1625172 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,714 +chrX 1625173 . C T, 0.89 . AS_QUALapprox=|10|0;AS_VarDP=18|18|0;BaseQRankSum=0.628;DP=38;MQRankSum=-0.944;QUALapprox=10;RAW_GT_COUNT=0,0,1;RAW_MQandDP=135049,38;ReadPosRankSum=0.665;VarDP=36 GT:AD:DP:GQ:PL:SB 1:18,18,0:36:10:10,0,616:13,5,7,11 +chrX 1625174 . G . . END=1625305 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,1330 +chrX 1625306 . A G, 33.04 . AS_QUALapprox=|43|0;AS_VarDP=27|28|0;BaseQRankSum=0.599;DP=57;MQRankSum=0.078;QUALapprox=43;RAW_GT_COUNT=0,0,1;RAW_MQandDP=204161,57;ReadPosRankSum=-0.556;VarDP=55 GT:AD:DP:GQ:PL:SB 1:27,28,0:55:43:43,0,1246:14,13,16,12 +chrX 1625307 . T . . END=1625527 GT:DP:GQ:MIN_DP:PL 0:55:35:54:0,35 +chrX 1625528 . A AGAAG, 0 . AS_QUALapprox=|1|0;AS_VarDP=11|11|0;BaseQRankSum=-0.539;DP=32;MQRankSum=0.000;QUALapprox=1;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;ReadPosRankSum=0.526;VarDP=22 GT:AD:DP:GQ:PL:SB 1:11,11,0:22:1:1,0,454:9,2,7,4 +chrX 1625529 . G . . END=1625903 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,762 +chrX 1625904 . A G, 1297.04 . AS_QUALapprox=|1307|0;AS_VarDP=0|41|0;DP=43;QUALapprox=1307;RAW_GT_COUNT=0,0,1;RAW_MQandDP=143965,43;VarDP=41 GT:AD:DP:GQ:PL:SB 1:0,41,0:41:99:1307,0,1307:0,0,23,18 +chrX 1625905 . A . . END=1625953 GT:DP:GQ:MIN_DP:PL 0:43:99:43:0,1175 +chrX 1625954 . CAA C,CA, 426.01 . AS_QUALapprox=|191|436|0;AS_VarDP=2|10|17|0;BaseQRankSum=-0.491;DP=55;MQRankSum=-0.136;QUALapprox=436;RAW_GT_COUNT=0,0,1;RAW_MQandDP=188223,55;ReadPosRankSum=-0.867;VarDP=29 GT:AD:DP:GQ:PL:SB 2:2,10,17,0:29:99:436,245,0,475:1,1,16,11 +chrX 1625957 . A . . END=1626233 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1467 +chrX 1626234 . CT C, 481.01 . AS_QUALapprox=|491|0;AS_VarDP=0|22|0;DP=49;QUALapprox=491;RAW_GT_COUNT=0,0,1;RAW_MQandDP=170139,49;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:491,0,491:0,0,10,12 +chrX 1626236 . T . . END=1626406 GT:DP:GQ:MIN_DP:PL 0:47:99:47:0,857 +chrX 1626407 . G C, 1890.04 . AS_QUALapprox=|1900|0;AS_VarDP=0|57|0;DP=57;QUALapprox=1900;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:1900,0,1900:0,0,32,25 +chrX 1626408 . T . . END=1626818 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1682 +chrX 1626819 . C T, 2439.04 . AS_QUALapprox=|2449|0;AS_VarDP=0|56|0;DP=56;QUALapprox=2449;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,56,0:56:99:2449,0,2449:0,0,26,30 +chrX 1626820 . G . . END=1626821 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1800 +chrX 1626822 . G GT, 2506.01 . AS_QUALapprox=|2516|0;AS_VarDP=0|58|0;DP=58;QUALapprox=2516;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,58,0:58:99:2516,0,2516:0,0,26,32 +chrX 1626823 . T . . END=1626824 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1697 +chrX 1626825 . C T, 2377.04 . AS_QUALapprox=|2387|0;AS_VarDP=0|54|0;DP=54;QUALapprox=2387;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=54 GT:AD:DP:GQ:PL:SB 1:0,54,0:54:99:2387,0,2387:0,0,24,30 +chrX 1626826 . G . . END=1626952 GT:DP:GQ:MIN_DP:PL 0:82:99:82:0,1691 +chrX 1626953 . G C, 209.04 . AS_QUALapprox=|219|0;AS_VarDP=35|41|0;BaseQRankSum=0.219;DP=81;MQRankSum=1.560;QUALapprox=219;RAW_GT_COUNT=0,0,1;RAW_MQandDP=290341,81;ReadPosRankSum=-0.151;VarDP=76 GT:AD:DP:GQ:PL:SB 1:35,41,0:76:99:219,0,1270:16,19,22,19 +chrX 1626954 . A . . END=1627320 GT:DP:GQ:MIN_DP:PL 0:75:99:75:0,1320 +chrX 1627321 . A G, 2288.04 . AS_QUALapprox=|2298|0;AS_VarDP=0|52|0;DP=52;QUALapprox=2298;RAW_GT_COUNT=0,0,1;RAW_MQandDP=171926,52;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:2298,0,2298:0,0,22,30 +chrX 1627322 . T . . END=1627325 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,1588 +chrX 1627326 . C A, 2366.04 . AS_QUALapprox=|2376|0;AS_VarDP=0|55|0;DP=56;QUALapprox=2376;RAW_GT_COUNT=0,0,1;RAW_MQandDP=186326,56;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:2376,0,2401:0,0,25,29 +chrX 1627327 . T . . END=1627359 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1602 +chrX 1627360 . A G, 1964.04 . AS_QUALapprox=|1974|0;AS_VarDP=0|66|0;DP=68;QUALapprox=1974;RAW_GT_COUNT=0,0,1;RAW_MQandDP=229175,68;VarDP=66 GT:AD:DP:GQ:PL:SB 1:0,66,0:66:99:1974,0,1974:0,0,35,31 +chrX 1627361 . C . . END=1627935 GT:DP:GQ:MIN_DP:PL 0:74:53:58:0,53 +chrX 1627936 . A G, 1834.04 . AS_QUALapprox=|1844|0;AS_VarDP=0|59|0;DP=61;QUALapprox=1844;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:1844,0,1844:0,0,32,27 +chrX 1627937 . T . . END=1627956 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1800 +chrX 1627957 . A G, 2003.04 . AS_QUALapprox=|2013|0;AS_VarDP=0|62|0;DP=63;QUALapprox=2013;RAW_GT_COUNT=0,0,1;RAW_MQandDP=225432,63;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:2013,0,2013:0,0,34,28 +chrX 1627958 . A . . END=1628062 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1800 +chrX 1628063 . G A, 283.04 . AS_QUALapprox=|293|0;AS_VarDP=26|35|0;BaseQRankSum=-0.171;DP=63;MQRankSum=-0.731;QUALapprox=293;RAW_GT_COUNT=0,0,1;RAW_MQandDP=224738,63;ReadPosRankSum=0.598;VarDP=61 GT:AD:DP:GQ:PL:SB 1:26,35,0:61:99:293,0,1156:13,13,16,19 +chrX 1628064 . T . . END=1628614 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,466 +chrX 1628615 . C G, 987.04 . AS_QUALapprox=|997|0;AS_VarDP=0|31|0;DP=31;QUALapprox=997;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:997,0,997:0,0,7,24 +chrX 1628616 . T . . END=1628780 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,1045 +chrX 1628781 . C T, 109.04 . AS_QUALapprox=|119|0;AS_VarDP=22|25|0;BaseQRankSum=0.405;DP=47;MQRankSum=0.000;QUALapprox=119;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;ReadPosRankSum=0.875;VarDP=47 GT:AD:DP:GQ:PL:SB 1:22,25,0:47:99:119,0,778:7,15,11,14 +chrX 1628782 . C . . END=1628829 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,1249 +chrX 1628830 . T TCTC, 2273.01 . AS_QUALapprox=|2283|0;AS_VarDP=0|51|0;DP=52;QUALapprox=2283;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=51 GT:AD:DP:GQ:PL:SB 1:0,51,0:51:99:2283,0,2284:0,0,24,27 +chrX 1628831 . C . . END=1628943 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,136 +chrX 1628944 . T C, 155.04 . AS_QUALapprox=|591|0;AS_VarDP=4|26|0;DP=47;QUALapprox=591;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;VarDP=30 GT:AD:DP:GQ:PL:SB 1:4,26,0:30:99:591,0,832:0,0,11,15 +chrX 1628945 . T . . END=1629035 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,312 +chrX 1629036 . C T, 165.04 . AS_QUALapprox=|175|0;AS_VarDP=25|29|0;BaseQRankSum=-0.751;DP=57;MQRankSum=0.000;QUALapprox=175;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;ReadPosRankSum=-1.406;VarDP=54 GT:AD:DP:GQ:PL:SB 1:25,29,0:54:99:175,0,1274:10,15,10,19 +chrX 1629037 . T . . END=1629037 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,1787 +chrX 1629038 . C T, 165.04 . AS_QUALapprox=|175|0;AS_VarDP=25|29|0;BaseQRankSum=-0.982;DP=58;MQRankSum=0.000;QUALapprox=175;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;ReadPosRankSum=-1.371;VarDP=54 GT:AD:DP:GQ:PL:SB 1:25,29,0:54:99:175,0,1274:10,15,10,19 +chrX 1629039 . C . . END=1629081 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1718 +chrX 1629082 . TTA T, 1830.01 . AS_QUALapprox=|1840|0;AS_VarDP=0|49|0;DP=64;QUALapprox=1840;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=49 GT:AD:DP:GQ:PL:SB 1:0,49,0:49:99:1840,0,1840:0,0,24,25 +chrX 1629085 . T . . END=1629278 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1607 +chrX 1629279 . C . . END=1629279 GT:DP:GQ:MIN_DP:PL 0:68:10:68:0,10 +chrX 1629280 . C . . END=1629554 GT:DP:GQ:MIN_DP:PL 0:67:95:67:0,95 +chrX 1629555 . C A, 338.04 . AS_QUALapprox=|348|0;AS_VarDP=30|41|0;BaseQRankSum=-0.016;DP=73;MQRankSum=0.000;QUALapprox=348;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;ReadPosRankSum=0.530;VarDP=71 GT:AD:DP:GQ:PL:SB 1:30,41,0:71:99:348,0,1305:15,15,20,21 +chrX 1629556 . T . . END=1629687 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1785 +chrX 1629688 . A C, 1975.04 . AS_QUALapprox=|1985|0;AS_VarDP=0|59|0;DP=63;QUALapprox=1985;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:1985,0,1985:0,0,31,28 +chrX 1629689 . T . . END=1630016 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1493 +chrX 1630017 . T C, 199.04 . AS_QUALapprox=|209|0;AS_VarDP=21|28|0;BaseQRankSum=-0.245;DP=53;MQRankSum=-0.825;QUALapprox=209;RAW_GT_COUNT=0,0,1;RAW_MQandDP=189904,53;ReadPosRankSum=-0.152;VarDP=49 GT:AD:DP:GQ:PL:SB 1:21,28,0:49:99:209,0,898:10,11,12,16 +chrX 1630018 . T . . END=1630143 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1558 +chrX 1630144 . C CT, 111.01 . AS_QUALapprox=|121|0;AS_VarDP=21|25|0;BaseQRankSum=0.155;DP=58;MQRankSum=0.000;QUALapprox=121;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;ReadPosRankSum=0.585;VarDP=46 GT:AD:DP:GQ:PL:SB 1:21,25,0:46:99:121,0,762:13,8,14,11 +chrX 1630145 . T . . END=1630299 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,193 +chrX 1630300 . A ATTT, 561.01 . AS_QUALapprox=|571|0;AS_VarDP=0|17|0;DP=48;QUALapprox=571;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158309,48;VarDP=17 GT:AD:DP:GQ:PL:SB 1:0,17,0:17:99:571,0,983:0,0,9,8 +chrX 1630301 . T . . END=1630323 GT:DP:GQ:MIN_DP:PL 0:43:99:43:0,154 +chrX 1630324 . G . . END=1630336 GT:DP:GQ:MIN_DP:PL 0:31:0:31:0,0 +chrX 1630337 . G . . END=1630382 GT:DP:GQ:MIN_DP:PL 0:43:59:43:0,59 +chrX 1630383 . G . . END=1630383 GT:DP:GQ:MIN_DP:PL 0:41:0:41:0,0 +chrX 1630384 . C . . END=1630870 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,759 +chrX 1630871 . T TTTTA, 1507.01 . AS_QUALapprox=|1517|0;AS_VarDP=0|34|0;DP=54;QUALapprox=1517;RAW_GT_COUNT=0,0,1;RAW_MQandDP=192675,54;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1517,0,1518:0,0,12,22 +chrX 1630872 . T . . END=1631166 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,189 +chrX 1631167 . G A, 288.04 . AS_QUALapprox=|298|0;AS_VarDP=26|34|0;BaseQRankSum=1.191;DP=63;MQRankSum=0.000;QUALapprox=298;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;ReadPosRankSum=-0.851;VarDP=60 GT:AD:DP:GQ:PL:SB 1:26,34,0:60:99:298,0,1122:17,9,18,16 +chrX 1631168 . C . . END=1631844 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,208 +chrX 1631845 . T C, 2188.04 . AS_QUALapprox=|2198|0;AS_VarDP=0|69|0;DP=70;QUALapprox=2198;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,69,0:69:99:2198,0,2198:0,0,41,28 +chrX 1631846 . G . . END=1631914 GT:DP:GQ:MIN_DP:PL 0:73:99:73:0,1800 +chrX 1631915 . A . . END=1631915 GT:DP:GQ:MIN_DP:PL 0:71:14:71:0,14 +chrX 1631916 . G . . END=1632388 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1281 +chrX 1632389 . C T, 120.04 . AS_QUALapprox=|130|0;AS_VarDP=27|30|0;BaseQRankSum=0.636;DP=59;MQRankSum=-0.914;QUALapprox=130;RAW_GT_COUNT=0,0,1;RAW_MQandDP=211716,59;ReadPosRankSum=-0.791;VarDP=57 GT:AD:DP:GQ:PL:SB 1:27,30,0:57:99:130,0,1023:15,12,16,14 +chrX 1632390 . G . . END=1632708 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1499 +chrX 1632709 . T C, 2213.04 . AS_QUALapprox=|2223|0;AS_VarDP=0|68|0;DP=71;QUALapprox=2223;RAW_GT_COUNT=0,0,1;RAW_MQandDP=254809,71;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,68,0:68:99:2223,0,2223:0,0,40,28 +chrX 1632710 . G . . END=1632811 GT:DP:GQ:MIN_DP:PL 0:77:99:77:0,1800 +chrX 1632812 . A G, 15.04 . AS_QUALapprox=|25|0;AS_VarDP=34|38|0;BaseQRankSum=-1.834;DP=73;MQRankSum=1.525;QUALapprox=25;RAW_GT_COUNT=0,0,1;RAW_MQandDP=260037,73;ReadPosRankSum=-0.547;VarDP=72 GT:AD:DP:GQ:PL:SB 1:34,38,0:72:25:25,0,1165:22,12,21,17 +chrX 1632813 . T . . END=1632830 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1800 +chrX 1632831 . C T, 65.04 . AS_QUALapprox=|75|0;AS_VarDP=31|34|0;BaseQRankSum=-0.063;DP=66;MQRankSum=1.078;QUALapprox=75;RAW_GT_COUNT=0,0,1;RAW_MQandDP=236916,66;ReadPosRankSum=-0.276;VarDP=65 GT:AD:DP:GQ:PL:SB 1:31,34,0:65:75:75,0,1086:20,11,16,18 +chrX 1632832 . G . . END=1633015 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1677 +chrX 1633016 . GA G, 2138.01 . AS_QUALapprox=|2148|0;AS_VarDP=0|71|0;DP=76;QUALapprox=2148;RAW_GT_COUNT=0,0,1;RAW_MQandDP=273600,76;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,71,0:71:99:2148,0,2148:0,0,39,32 +chrX 1633018 . A . . END=1633123 GT:DP:GQ:MIN_DP:PL 0:78:99:78:0,1800 +chrX 1633124 . G T, 64.04 . AS_QUALapprox=|74|0;AS_VarDP=38|40|0;BaseQRankSum=0.614;DP=83;MQRankSum=0.000;QUALapprox=74;RAW_GT_COUNT=0,0,1;RAW_MQandDP=298800,83;ReadPosRankSum=0.850;VarDP=78 GT:AD:DP:GQ:PL:SB 1:38,40,0:78:74:74,0,1305:18,20,16,24 +chrX 1633125 . T . . END=1633641 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1781 +chrX 1633642 . A ATTTT, 403.01 . AS_QUALapprox=|413|0;AS_VarDP=15|25|0;BaseQRankSum=0.697;DP=58;MQRankSum=-1.346;QUALapprox=413;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201985,58;ReadPosRankSum=-0.657;VarDP=40 GT:AD:DP:GQ:PL:SB 1:15,25,0:40:99:413,0,1079:7,8,12,13 +chrX 1633643 . T . . END=1634652 GT:DP:GQ:MIN_DP:PL 0:62:59:62:0,59 +chrX 1634653 . A AC, 65.01 . AS_QUALapprox=|75|0;AS_VarDP=21|24|0;BaseQRankSum=1.118;DP=55;MQRankSum=0.000;QUALapprox=75;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;ReadPosRankSum=-0.137;VarDP=45 GT:AD:DP:GQ:PL:SB 1:21,24,0:45:75:75,0,665:8,13,14,10 +chrX 1634654 . C . . END=1635275 GT:DP:GQ:MIN_DP:PL 0:45:99:45:0,133 +chrX 1635276 . G A, 41.04 . AS_QUALapprox=|51|0;AS_VarDP=22|23|0;BaseQRankSum=-0.372;DP=46;MQRankSum=0.095;QUALapprox=51;RAW_GT_COUNT=0,0,1;RAW_MQandDP=163025,46;ReadPosRankSum=-0.545;VarDP=45 GT:AD:DP:GQ:PL:SB 1:22,23,0:45:51:51,0,699:9,13,13,10 +chrX 1635277 . C . . END=1636566 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1122 +chrX 1636567 . TG T, 226.01 . AS_QUALapprox=|236|0;AS_VarDP=30|36|0;BaseQRankSum=-0.953;DP=69;MQRankSum=0.000;QUALapprox=236;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;ReadPosRankSum=0.528;VarDP=66 GT:AD:DP:GQ:PL:SB 1:30,36,0:66:99:236,0,1446:11,19,16,20 +chrX 1636569 . T . . END=1637285 GT:DP:GQ:MIN_DP:PL 0:2:35:1:0,35 +chrX 1637286 . C . . END=1637286 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 1637287 . T . . END=1637311 GT:DP:GQ:MIN_DP:PL 0:2:35:1:0,35 +chrX 1637312 . C . . END=1637410 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1637411 . G . . END=1637417 GT:DP:GQ:MIN_DP:PL 0:2:35:1:0,35 +chrX 1637418 . G . . END=1637418 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1637419 . T . . END=1637420 GT:DP:GQ:MIN_DP:PL 0:2:25:1:0,25 +chrX 1637421 . T . . END=1637421 GT:DP:GQ:MIN_DP:PL 0:2:10:2:0,10 +chrX 1637422 . C . . END=1637424 GT:DP:GQ:MIN_DP:PL 0:2:39:2:0,39 +chrX 1637425 . A . . END=1637425 GT:DP:GQ:MIN_DP:PL 0:2:10:2:0,10 +chrX 1637426 . G . . END=1637442 GT:DP:GQ:MIN_DP:PL 0:2:35:1:0,35 +chrX 1637443 . C . . END=1637443 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1637444 . C . . END=1637488 GT:DP:GQ:MIN_DP:PL 0:5:55:5:0,55 +chrX 1637489 . A . . END=1637489 GT:DP:GQ:MIN_DP:PL 0:7:0:7:0,0 +chrX 1637490 . G . . END=1637492 GT:DP:GQ:MIN_DP:PL 0:6:99:6:0,174 +chrX 1637493 . A . . END=1637493 GT:DP:GQ:MIN_DP:PL 0:7:5:7:0,5 +chrX 1637494 . G . . END=1637525 GT:DP:GQ:MIN_DP:PL 0:7:20:6:0,20 +chrX 1637526 . T . . END=1637526 GT:DP:GQ:MIN_DP:PL 0:8:0:8:0,0 +chrX 1637527 . C . . END=1637593 GT:DP:GQ:MIN_DP:PL 0:7:35:6:0,35 +chrX 1637594 . T . . END=1638509 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1638510 . A . . END=1638511 GT:DP:GQ:MIN_DP:PL 0:2:35:1:0,35 +chrX 1638512 . G . . END=1638512 GT:DP:GQ:MIN_DP:PL 0:3:15:3:0,15 +chrX 1638513 . T . . END=1638519 GT:DP:GQ:MIN_DP:PL 0:3:84:3:0,84 +chrX 1638520 . A C, 15.04 . AS_QUALapprox=|25|0;AS_VarDP=1|2|0;BaseQRankSum=0.000;DP=3;MQRankSum=-0.967;QUALapprox=25;RAW_GT_COUNT=0,0,1;RAW_MQandDP=4162,3;ReadPosRankSum=0.967;VarDP=3 GT:AD:DP:GQ:PL:SB 1:1,2,0:3:25:25,0,49:0,1,1,1 +chrX 1638521 . T . . END=1638616 GT:DP:GQ:MIN_DP:PL 0:4:74:4:0,74 +chrX 1638617 . C T, 89.04 . AS_QUALapprox=|99|0;AS_VarDP=0|4|0;DP=4;QUALapprox=99;RAW_GT_COUNT=0,0,1;RAW_MQandDP=7411,4;VarDP=4 GT:AD:DP:GQ:PL:SB 1:0,4,0:4:99:99,0,99:0,0,2,2 +chrX 1638618 . G . . END=1638659 GT:DP:GQ:MIN_DP:PL 0:4:45:4:0,45 +chrX 1638660 . C . . END=1638787 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1638788 . G . . END=1638812 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 1638813 . G . . END=1638813 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1638814 . G . . END=1638817 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 1638818 . C . . END=1638819 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1638820 . T . . END=1638837 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1638838 . A . . END=1638839 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 1638840 . G . . END=1638844 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 1638845 . C . . END=1638845 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1638846 . C . . END=1638856 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 1638857 . A . . END=1638859 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1638860 . C . . END=1638872 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1638873 . A . . END=1638873 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1638874 . C . . END=1638877 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1638878 . G . . END=1639318 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1639319 . C . . END=1639320 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 1639321 . A . . END=1639323 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1639324 . T . . END=1639324 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 1639325 . C . . END=1639325 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1639326 . T . . END=1639334 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 1639335 . G . . END=1639335 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1639336 . T . . END=1639439 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 1639440 . C . . END=1639440 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1639441 . G . . END=1639455 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 1639456 . G . . END=1639498 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1639499 . T . . END=1639579 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 1639580 . A . . END=1639580 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1639581 . T . . END=1639597 GT:DP:GQ:MIN_DP:PL 0:2:35:1:0,35 +chrX 1639598 . T . . END=1639598 GT:DP:GQ:MIN_DP:PL 0:2:10:2:0,10 +chrX 1639599 . T . . END=1639616 GT:DP:GQ:MIN_DP:PL 0:2:39:2:0,39 +chrX 1639617 . A . . END=1640054 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1640055 . G . . END=1640157 GT:DP:GQ:MIN_DP:PL 0:2:35:1:0,35 +chrX 1640158 . G . . END=1640158 GT:DP:GQ:MIN_DP:PL 0:3:0:3:0,0 +chrX 1640159 . T . . END=1640336 GT:DP:GQ:MIN_DP:PL 0:4:45:4:0,45 +chrX 1640337 . A . . END=1640337 GT:DP:GQ:MIN_DP:PL 0:5:0:5:0,0 +chrX 1640338 . T . . END=1640339 GT:DP:GQ:MIN_DP:PL 0:5:99:5:0,174 +chrX 1640340 . A . . END=1640340 GT:DP:GQ:MIN_DP:PL 0:5:0:5:0,0 +chrX 1640341 . T . . END=1640348 GT:DP:GQ:MIN_DP:PL 0:4:99:4:0,129 +chrX 1640349 . G . . END=1640349 GT:DP:GQ:MIN_DP:PL 0:4:0:4:0,0 +chrX 1640350 . A . . END=1640350 GT:DP:GQ:MIN_DP:PL 0:4:99:4:0,139 +chrX 1640351 . T . . END=1640352 GT:DP:GQ:MIN_DP:PL 0:4:0:4:0,0 +chrX 1640353 . T . . END=1640655 GT:DP:GQ:MIN_DP:PL 0:31:59:31:0,59 +chrX 1640656 . T C, 35.04 . AS_QUALapprox=|45|0;AS_VarDP=2|3|0;BaseQRankSum=0.000;DP=5;MQRankSum=-0.524;QUALapprox=45;RAW_GT_COUNT=0,0,1;RAW_MQandDP=8634,5;ReadPosRankSum=1.645;VarDP=5 GT:AD:DP:GQ:PL:SB 1:2,3,0:5:45:45,0,135:1,1,0,3 +chrX 1640657 . C . . END=1640657 GT:DP:GQ:MIN_DP:PL 0:5:90:5:0,90 +chrX 1640658 . C T, 35.04 . AS_QUALapprox=|45|0;AS_VarDP=2|3|0;BaseQRankSum=0.000;DP=5;MQRankSum=-0.524;QUALapprox=45;RAW_GT_COUNT=0,0,1;RAW_MQandDP=8634,5;ReadPosRankSum=1.150;VarDP=5 GT:AD:DP:GQ:PL:SB 1:2,3,0:5:45:45,0,135:1,1,0,3 +chrX 1640659 . A . . END=1640662 GT:DP:GQ:MIN_DP:PL 0:6:45:6:0,45 +chrX 1640663 . T . . END=1640686 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 1640687 . C . . END=1640689 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1640690 . C . . END=1640691 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 1640692 . T . . END=1640694 GT:DP:GQ:MIN_DP:PL 0:2:25:1:0,25 +chrX 1640695 . G . . END=1640695 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 1640696 . T . . END=1640851 GT:DP:GQ:MIN_DP:PL 0:3:25:1:0,25 +chrX 1640852 . C . . END=1640857 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1640858 . C . . END=1640865 GT:DP:GQ:MIN_DP:PL 0:4:84:4:0,84 +chrX 1640866 . G . . END=1640866 GT:DP:GQ:MIN_DP:PL 0:5:0:5:0,0 +chrX 1640867 . T . . END=1641106 GT:DP:GQ:MIN_DP:PL 0:3:25:1:0,25 +chrX 1641107 . G . . END=1641107 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 1641108 . T . . END=1641110 GT:DP:GQ:MIN_DP:PL 0:3:45:3:0,45 +chrX 1641111 . G . . END=1641150 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1641151 . C . . END=1641333 GT:DP:GQ:MIN_DP:PL 0:7:30:1:0,30 +chrX 1641334 . T . . END=1641334 GT:DP:GQ:MIN_DP:PL 0:23:0:23:0,0 +chrX 1641335 . A G, 39.04 . AS_QUALapprox=|49|0;AS_VarDP=0|2|0;DP=4;QUALapprox=49;RAW_GT_COUNT=0,0,1;RAW_MQandDP=10088,4;VarDP=2 GT:AD:DP:GQ:PL:SB 1:0,2,0:2:49:49,0,49:0,0,1,1 +chrX 1641336 . G . . END=1641969 GT:DP:GQ:MIN_DP:PL 0:64:84:64:0,84 +chrX 1641970 . G A, 461.04 . AS_QUALapprox=|471|0;AS_VarDP=28|41|0;BaseQRankSum=-0.803;DP=73;MQRankSum=0.407;QUALapprox=471;RAW_GT_COUNT=0,0,1;RAW_MQandDP=253811,73;ReadPosRankSum=-1.583;VarDP=69 GT:AD:DP:GQ:PL:SB 1:28,41,0:69:99:471,0,1711:15,13,18,23 +chrX 1641971 . T . . END=1641980 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1800 +chrX 1641981 . C CT, 424.01 . AS_QUALapprox=|434|0;AS_VarDP=29|40|0;BaseQRankSum=2.176;DP=70;MQRankSum=0.345;QUALapprox=434;RAW_GT_COUNT=0,0,1;RAW_MQandDP=243011,70;ReadPosRankSum=-1.668;VarDP=69 GT:AD:DP:GQ:PL:SB 1:29,40,0:69:99:434,0,1703:15,14,17,23 +chrX 1641982 . G . . END=1642148 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1464 +chrX 1642149 . C T, 183.04 . AS_QUALapprox=|193|0;AS_VarDP=28|32|0;BaseQRankSum=1.363;DP=63;MQRankSum=0.119;QUALapprox=193;RAW_GT_COUNT=0,0,1;RAW_MQandDP=220162,63;ReadPosRankSum=0.660;VarDP=60 GT:AD:DP:GQ:PL:SB 1:28,32,0:60:99:193,0,1059:11,17,17,15 +chrX 1642150 . T . . END=1642308 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1429 +chrX 1642309 . A G, 149.04 . AS_QUALapprox=|159|0;AS_VarDP=24|27|0;BaseQRankSum=1.329;DP=54;MQRankSum=-0.904;QUALapprox=159;RAW_GT_COUNT=0,0,1;RAW_MQandDP=191376,54;ReadPosRankSum=1.444;VarDP=51 GT:AD:DP:GQ:PL:SB 1:24,27,0:51:99:159,0,1277:14,10,15,12 +chrX 1642310 . C . . END=1643664 GT:DP:GQ:MIN_DP:PL 0:56:49:52:0,49 +chrX 1643665 . A G, 178.04 . AS_QUALapprox=|188|0;AS_VarDP=34|38|0;BaseQRankSum=-1.670;DP=74;MQRankSum=0.000;QUALapprox=188;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;ReadPosRankSum=-0.894;VarDP=72 GT:AD:DP:GQ:PL:SB 1:34,38,0:72:99:188,0,1688:13,21,17,21 +chrX 1643666 . A . . END=1643666 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1800 +chrX 1643667 . T C, 178.04 . AS_QUALapprox=|188|0;AS_VarDP=34|38|0;BaseQRankSum=-3.076;DP=73;MQRankSum=0.000;QUALapprox=188;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;ReadPosRankSum=-1.049;VarDP=72 GT:AD:DP:GQ:PL:SB 1:34,38,0:72:99:188,0,1688:13,21,17,21 +chrX 1643668 . G . . END=1643752 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1800 +chrX 1643753 . G T, 329.04 . AS_QUALapprox=|339|0;AS_VarDP=37|46|0;BaseQRankSum=1.059;DP=84;MQRankSum=0.000;QUALapprox=339;RAW_GT_COUNT=0,0,1;RAW_MQandDP=302400,84;ReadPosRankSum=1.430;VarDP=83 GT:AD:DP:GQ:PL:SB 1:37,46,0:83:99:339,0,1517:16,21,25,21 +chrX 1643754 . T . . END=1643913 GT:DP:GQ:MIN_DP:PL 0:85:99:85:0,1800 +chrX 1643914 . A C, 351.04 . AS_QUALapprox=|361|0;AS_VarDP=28|39|0;BaseQRankSum=-0.561;DP=71;MQRankSum=0.000;QUALapprox=361;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;ReadPosRankSum=-2.422;VarDP=67 GT:AD:DP:GQ:PL:SB 1:28,39,0:67:99:361,0,1254:14,14,19,20 +chrX 1643915 . T . . END=1644057 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1800 +chrX 1644058 . A C, 163.04 . AS_QUALapprox=|173|0;AS_VarDP=27|33|0;BaseQRankSum=-1.379;DP=62;MQRankSum=0.000;QUALapprox=173;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;ReadPosRankSum=-0.550;VarDP=60 GT:AD:DP:GQ:PL:SB 1:27,33,0:60:99:173,0,1076:14,13,14,19 +chrX 1644059 . G . . END=1644388 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,238 +chrX 1644389 . T . . END=1644389 GT:DP:GQ:MIN_DP:PL 0:64:5:64:0,5 +chrX 1644390 . G . . END=1645164 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,466 +chrX 1645165 . C T, 135.04 . AS_QUALapprox=|145|0;AS_VarDP=18|22|0;BaseQRankSum=1.078;DP=41;MQRankSum=-0.854;QUALapprox=145;RAW_GT_COUNT=0,0,1;RAW_MQandDP=142141,41;ReadPosRankSum=-0.705;VarDP=40 GT:AD:DP:GQ:PL:SB 1:18,22,0:40:99:145,0,955:5,13,10,12 +chrX 1645166 . A . . END=1645402 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,288 +chrX 1645403 . TTG T, 144.01 . AS_QUALapprox=|154|0;AS_VarDP=20|26|0;BaseQRankSum=0.015;DP=52;MQRankSum=-1.791;QUALapprox=154;RAW_GT_COUNT=0,0,1;RAW_MQandDP=181332,52;ReadPosRankSum=-0.067;VarDP=46 GT:AD:DP:GQ:PL:SB 1:20,26,0:46:99:154,0,933:8,12,14,12 +chrX 1645406 . T . . END=1645492 GT:DP:GQ:MIN_DP:PL 0:37:99:37:0,982 +chrX 1645493 . T C, 168.04 . AS_QUALapprox=|178|0;AS_VarDP=13|19|0;BaseQRankSum=-1.443;DP=35;MQRankSum=-1.441;QUALapprox=178;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122161,35;ReadPosRankSum=1.382;VarDP=32 GT:AD:DP:GQ:PL:SB 1:13,19,0:32:99:178,0,630:8,5,11,8 +chrX 1645494 . G . . END=1646080 GT:DP:GQ:MIN_DP:PL 0:67:45:54:0,45 +chrX 1646081 . G C, 334.04 . AS_QUALapprox=|344|0;AS_VarDP=28|38|0;BaseQRankSum=0.841;DP=66;MQRankSum=0.000;QUALapprox=344;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;ReadPosRankSum=-0.623;VarDP=66 GT:AD:DP:GQ:PL:SB 1:28,38,0:66:99:344,0,1241:13,15,20,18 +chrX 1646082 . C . . END=1646311 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1440 +chrX 1646312 . T . . END=1646312 GT:DP:GQ:MIN_DP:PL 0:69:5:69:0,5 +chrX 1646313 . A . . END=1646509 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,168 +chrX 1646510 . T C, 47.04 . AS_QUALapprox=|57|0;AS_VarDP=28|29|0;BaseQRankSum=0.466;DP=58;MQRankSum=0.000;QUALapprox=57;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;ReadPosRankSum=-0.016;VarDP=57 GT:AD:DP:GQ:PL:SB 1:28,29,0:57:57:57,0,945:7,21,11,18 +chrX 1646511 . C . . END=1646548 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1800 +chrX 1646549 . T C, 34.04 . AS_QUALapprox=|44|0;AS_VarDP=29|33|0;BaseQRankSum=-2.315;DP=62;MQRankSum=0.000;QUALapprox=44;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;ReadPosRankSum=-0.198;VarDP=62 GT:AD:DP:GQ:PL:SB 1:29,33,0:62:44:44,0,1032:9,20,14,19 +chrX 1646550 . G . . END=1646957 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,114 +chrX 1646958 . CTCTTTCTT C, 361.01 . AS_QUALapprox=|371|0;AS_VarDP=19|28|0;BaseQRankSum=-0.356;DP=55;MQRankSum=0.000;QUALapprox=371;RAW_GT_COUNT=0,0,1;RAW_MQandDP=197536,55;ReadPosRankSum=2.310;VarDP=47 GT:AD:DP:GQ:PL:SB 1:19,28,0:47:99:371,0,1203:6,13,11,17 +chrX 1646967 . T . . END=1647116 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1144 +chrX 1647117 . C . . END=1647117 GT:DP:GQ:MIN_DP:PL 0:54:11:54:0,11 +chrX 1647118 . T . . END=1647385 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1800 +chrX 1647386 . G A, 341.04 . AS_QUALapprox=|351|0;AS_VarDP=32|45|0;BaseQRankSum=-1.082;DP=78;MQRankSum=0.000;QUALapprox=351;RAW_GT_COUNT=0,0,1;RAW_MQandDP=280800,78;ReadPosRankSum=1.313;VarDP=77 GT:AD:DP:GQ:PL:SB 1:32,45,0:77:99:351,0,1404:14,18,22,23 +chrX 1647387 . C . . END=1647452 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1800 +chrX 1647453 . C G, 217.04 . AS_QUALapprox=|227|0;AS_VarDP=24|31|0;BaseQRankSum=0.245;DP=55;MQRankSum=0.000;QUALapprox=227;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;ReadPosRankSum=-1.333;VarDP=55 GT:AD:DP:GQ:PL:SB 1:24,31,0:55:99:227,0,1041:10,14,15,16 +chrX 1647454 . T . . END=1647682 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1800 +chrX 1647683 . C T, 122.04 . AS_QUALapprox=|132|0;AS_VarDP=30|34|0;BaseQRankSum=-0.253;DP=66;MQRankSum=0.000;QUALapprox=132;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;ReadPosRankSum=-0.511;VarDP=64 GT:AD:DP:GQ:PL:SB 1:30,34,0:64:99:132,0,1100:17,13,18,16 +chrX 1647684 . C . . END=1648905 GT:DP:GQ:MIN_DP:PL 0:70:50:70:0,50 +chrX 1648906 . C CTTTT, 8.96 . AS_QUALapprox=|19|0;AS_VarDP=27|28|0;BaseQRankSum=-1.556;DP=64;MQRankSum=1.055;QUALapprox=19;RAW_GT_COUNT=0,0,1;RAW_MQandDP=229300,64;ReadPosRankSum=1.171;VarDP=55 GT:AD:DP:GQ:PL:SB 1:27,28,0:55:19:19,0,1209:13,14,18,10 +chrX 1648907 . T . . END=1649057 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1581 +chrX 1649058 . C . . END=1649058 GT:DP:GQ:MIN_DP:PL 0:48:6:48:0,6 +chrX 1649059 . G . . END=1649596 GT:DP:GQ:MIN_DP:PL 0:56:34:46:0,34 +chrX 1649597 . CAAAAA C, 375.01 . AS_QUALapprox=|385|0;AS_VarDP=17|25|0;BaseQRankSum=-0.066;DP=54;MQRankSum=0.000;QUALapprox=385;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;ReadPosRankSum=0.034;VarDP=42 GT:AD:DP:GQ:PL:SB 1:17,25,0:42:99:385,0,1126:7,10,16,9 +chrX 1649603 . A . . END=1650672 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,229 +chrX 1650673 . AT A, 146.01 . AS_QUALapprox=|156|0;AS_VarDP=16|21|0;BaseQRankSum=0.967;DP=44;MQRankSum=0.000;QUALapprox=156;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158400,44;ReadPosRankSum=0.783;VarDP=37 GT:AD:DP:GQ:PL:SB 1:16,21,0:37:99:156,0,584:10,6,11,10 +chrX 1650675 . T . . END=1651111 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1439 +chrX 1651112 . G GTT,GTTT, 196.01 . AS_QUALapprox=|206|1|0;AS_VarDP=9|10|5|0;BaseQRankSum=0.986;DP=50;MQRankSum=0.436;QUALapprox=206;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176035,50;ReadPosRankSum=-0.328;VarDP=24 GT:AD:DP:GQ:PL:SB 1:9,10,5,0:24:99:206,0,205,386:4,5,7,8 +chrX 1651113 . T . . END=1652074 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,333 +chrX 1652075 . C A, 168.04 . AS_QUALapprox=|178|0;AS_VarDP=42|50|0;BaseQRankSum=-0.013;DP=95;MQRankSum=0.049;QUALapprox=178;RAW_GT_COUNT=0,0,1;RAW_MQandDP=283258,95;ReadPosRankSum=-0.447;VarDP=92 GT:AD:DP:GQ:PL:SB 1:42,50,0:92:99:178,0,1440:19,23,30,20 +chrX 1652076 . C . . END=1652852 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1524 +chrX 1652853 . A G, 115.04 . AS_QUALapprox=|125|0;AS_VarDP=36|41|0;BaseQRankSum=-1.027;DP=77;MQRankSum=0.146;QUALapprox=125;RAW_GT_COUNT=0,0,1;RAW_MQandDP=274900,77;ReadPosRankSum=0.071;VarDP=77 GT:AD:DP:GQ:PL:SB 1:36,41,0:77:99:125,0,1300:17,19,19,22 +chrX 1652854 . C . . END=1652882 GT:DP:GQ:MIN_DP:PL 0:75:99:75:0,1800 +chrX 1652883 . A G, 88.04 . AS_QUALapprox=|98|0;AS_VarDP=36|39|0;BaseQRankSum=0.611;DP=78;MQRankSum=0.076;QUALapprox=98;RAW_GT_COUNT=0,0,1;RAW_MQandDP=279075,78;ReadPosRankSum=1.835;VarDP=75 GT:AD:DP:GQ:PL:SB 1:36,39,0:75:98:98,0,1255:17,19,15,24 +chrX 1652884 . G . . END=1653049 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1681 +chrX 1653050 . G A, 0.07 . AS_QUALapprox=|6|0;AS_VarDP=32|30|0;BaseQRankSum=0.881;DP=63;MQRankSum=-0.046;QUALapprox=6;RAW_GT_COUNT=0,0,1;RAW_MQandDP=224389,63;ReadPosRankSum=-0.874;VarDP=62 GT:AD:DP:GQ:PL:SB 1:32,30,0:62:6:6,0,942:18,14,14,16 +chrX 1653051 . C . . END=1653570 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,331 +chrX 1653571 . T C, 231.04 . AS_QUALapprox=|241|0;AS_VarDP=25|31|0;BaseQRankSum=1.127;DP=58;MQRankSum=0.205;QUALapprox=241;RAW_GT_COUNT=0,0,1;RAW_MQandDP=204336,58;ReadPosRankSum=0.495;VarDP=56 GT:AD:DP:GQ:PL:SB 1:25,31,0:56:99:241,0,986:11,14,16,15 +chrX 1653572 . T . . END=1653591 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,1459 +chrX 1653592 . CTTTT C, 104.01 . AS_QUALapprox=|114|0;AS_VarDP=21|21|0;BaseQRankSum=2.031;DP=52;MQRankSum=0.676;QUALapprox=114;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180736,52;ReadPosRankSum=0.705;VarDP=42 GT:AD:DP:GQ:PL:SB 1:21,21,0:42:99:114,0,920:12,9,12,9 +chrX 1653597 . T . . END=1653832 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,1301 +chrX 1653833 . T C, 95.04 . AS_QUALapprox=|105|0;AS_VarDP=29|31|0;BaseQRankSum=0.858;DP=60;MQRankSum=-0.934;QUALapprox=105;RAW_GT_COUNT=0,0,1;RAW_MQandDP=215425,60;ReadPosRankSum=2.900;VarDP=60 GT:AD:DP:GQ:PL:SB 1:29,31,0:60:99:105,0,1038:8,21,14,17 +chrX 1653834 . G . . END=1653979 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1658 +chrX 1653980 . C T, 45.04 . AS_QUALapprox=|55|0;AS_VarDP=27|27|0;BaseQRankSum=1.558;DP=55;MQRankSum=0.000;QUALapprox=55;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;ReadPosRankSum=-0.286;VarDP=54 GT:AD:DP:GQ:PL:SB 1:27,27,0:54:55:55,0,919:16,11,15,12 +chrX 1653981 . C . . END=1654372 GT:DP:GQ:MIN_DP:PL 0:67:84:67:0,84 +chrX 1654373 . G . . END=1654373 GT:DP:GQ:MIN_DP:PL 0:64:9:64:0,9 +chrX 1654374 . A . . END=1654381 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1800 +chrX 1654382 . G . . END=1654382 GT:DP:GQ:MIN_DP:PL 0:65:0:65:0,0 +chrX 1654383 . C . . END=1654528 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1702 +chrX 1654529 . T C, 27.04 . AS_QUALapprox=|37|0;AS_VarDP=24|26|0;BaseQRankSum=-1.250;DP=53;MQRankSum=0.000;QUALapprox=37;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190225,53;ReadPosRankSum=0.379;VarDP=50 GT:AD:DP:GQ:PL:SB 1:24,26,0:50:37:37,0,846:10,14,11,15 +chrX 1654530 . G . . END=1655447 GT:DP:GQ:MIN_DP:PL 0:72:24:65:0,24 +chrX 1655448 . C A, 161.04 . AS_QUALapprox=|171|0;AS_VarDP=26|31|0;BaseQRankSum=0.352;DP=57;MQRankSum=0.000;QUALapprox=171;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;ReadPosRankSum=-1.595;VarDP=57 GT:AD:DP:GQ:PL:SB 1:26,31,0:57:99:171,0,1015:17,9,7,24 +chrX 1655449 . C . . END=1657196 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,134 +chrX 1657197 . G C, 313.04 . AS_QUALapprox=|323|0;AS_VarDP=30|39|0;BaseQRankSum=0.000;DP=71;MQRankSum=-0.848;QUALapprox=323;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255025,71;ReadPosRankSum=-0.266;VarDP=69 GT:AD:DP:GQ:PL:SB 1:30,39,0:69:99:323,0,1285:12,18,19,20 +chrX 1657198 . T . . END=1658064 GT:DP:GQ:MIN_DP:PL 0:67:44:51:0,44 +chrX 1658065 . C G, 115.04 . AS_QUALapprox=|125|0;AS_VarDP=34|41|0;BaseQRankSum=-1.662;DP=75;MQRankSum=0.000;QUALapprox=125;RAW_GT_COUNT=0,0,1;RAW_MQandDP=270000,75;ReadPosRankSum=0.261;VarDP=75 GT:AD:DP:GQ:PL:SB 1:34,41,0:75:99:125,0,1284:15,19,23,18 +chrX 1658066 . G . . END=1658112 GT:DP:GQ:MIN_DP:PL 0:76:99:76:0,1800 +chrX 1658113 . G A, 129.04 . AS_QUALapprox=|139|0;AS_VarDP=39|43|0;BaseQRankSum=0.256;DP=83;MQRankSum=0.000;QUALapprox=139;RAW_GT_COUNT=0,0,1;RAW_MQandDP=298800,83;ReadPosRankSum=0.255;VarDP=82 GT:AD:DP:GQ:PL:SB 1:39,43,0:82:99:139,0,1394:18,21,25,18 +chrX 1658114 . T . . END=1658539 GT:DP:GQ:MIN_DP:PL 0:78:99:78:0,112 +chrX 1658540 . G GT, 2946.01 . AS_QUALapprox=|2956|0;AS_VarDP=0|79|0;DP=79;QUALapprox=2956;RAW_GT_COUNT=0,0,1;RAW_MQandDP=284400,79;VarDP=79 GT:AD:DP:GQ:PL:SB 1:0,79,0:79:99:2956,0,2956:0,0,30,49 +chrX 1658541 . T . . END=1658561 GT:DP:GQ:MIN_DP:PL 0:78:99:78:0,1800 +chrX 1658562 . TTTTG T, 2655.01 . AS_QUALapprox=|2665|0;AS_VarDP=0|61|0;DP=77;QUALapprox=2665;RAW_GT_COUNT=0,0,1;RAW_MQandDP=277200,77;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,61,0:61:99:2665,0,2665:0,0,21,40 +chrX 1658567 . T . . END=1658604 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1800 +chrX 1658605 . A ATACT, 3298.01 . AS_QUALapprox=|3308|0;AS_VarDP=0|74|0;DP=77;QUALapprox=3308;RAW_GT_COUNT=0,0,1;RAW_MQandDP=277200,77;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,74,0:74:99:3308,0,3308:0,0,30,44 +chrX 1658606 . T . . END=1658645 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1800 +chrX 1658646 . TTC T, 1384.01 . AS_QUALapprox=|1394|0;AS_VarDP=2|45|0;BaseQRankSum=-0.226;DP=62;MQRankSum=2.736;QUALapprox=1394;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219131,62;ReadPosRankSum=1.213;VarDP=47 GT:AD:DP:GQ:PL:SB 1:2,45,0:47:99:1394,0,1464:2,0,23,22 +chrX 1658649 . T . . END=1658656 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1800 +chrX 1658657 . T C, 1601.04 . AS_QUALapprox=|1611|0;AS_VarDP=2|52|0;BaseQRankSum=-0.289;DP=68;MQRankSum=2.421;QUALapprox=1611;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237517,68;ReadPosRankSum=0.848;VarDP=54 GT:AD:DP:GQ:PL:SB 1:2,52,0:54:99:1611,0,1681:2,0,27,25 +chrX 1658658 . T . . END=1658807 GT:DP:GQ:MIN_DP:PL 0:53:46:53:0,46 +chrX 1658808 . C T, 214.04 . AS_QUALapprox=|224|0;AS_VarDP=25|30|0;BaseQRankSum=-0.261;DP=55;MQRankSum=-5.891;QUALapprox=224;RAW_GT_COUNT=0,0,1;RAW_MQandDP=143930,55;ReadPosRankSum=-0.834;VarDP=55 GT:AD:DP:GQ:PL:SB 1:25,30,0:55:99:224,0,1349:9,16,14,16 +chrX 1658809 . G . . END=1658847 GT:DP:GQ:MIN_DP:PL 0:44:99:44:0,1294 +chrX 1658848 . T C, 125.04 . AS_QUALapprox=|135|0;AS_VarDP=22|25|0;BaseQRankSum=-1.618;DP=47;MQRankSum=-3.470;QUALapprox=135;RAW_GT_COUNT=0,0,1;RAW_MQandDP=135315,47;ReadPosRankSum=1.166;VarDP=47 GT:AD:DP:GQ:PL:SB 1:22,25,0:47:99:135,0,1125:9,13,13,12 +chrX 1658849 . G . . END=1658854 GT:DP:GQ:MIN_DP:PL 0:47:99:47:0,1380 +chrX 1658855 . G C, 305.04 . AS_QUALapprox=|315|0;AS_VarDP=20|27|0;BaseQRankSum=-0.371;DP=47;MQRankSum=-3.270;QUALapprox=315;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136890,47;ReadPosRankSum=0.226;VarDP=47 GT:AD:DP:GQ:PL:SB 1:20,27,0:47:99:315,0,1215:9,11,14,13 +chrX 1658856 . C . . END=1658857 GT:DP:GQ:MIN_DP:PL 0:45:99:45:0,1469 +chrX 1658858 . A C, 280.04 . AS_QUALapprox=|290|0;AS_VarDP=21|27|0;BaseQRankSum=-1.758;DP=48;MQRankSum=-3.373;QUALapprox=290;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140490,48;ReadPosRankSum=0.355;VarDP=48 GT:AD:DP:GQ:PL:SB 1:21,27,0:48:99:290,0,1215:9,12,14,13 +chrX 1658859 . G . . END=1658921 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1480 +chrX 1658922 . C T, 310.04 . AS_QUALapprox=|320|0;AS_VarDP=24|31|0;BaseQRankSum=-0.057;DP=57;MQRankSum=-2.512;QUALapprox=320;RAW_GT_COUNT=0,0,1;RAW_MQandDP=178311,57;ReadPosRankSum=0.102;VarDP=55 GT:AD:DP:GQ:PL:SB 1:24,31,0:55:99:320,0,1288:13,11,13,18 +chrX 1658923 . A . . END=1659031 GT:DP:GQ:MIN_DP:PL 0:74:99:74:0,1620 +chrX 1659032 . C T, 101.04 . AS_QUALapprox=|111|0;AS_VarDP=36|38|0;BaseQRankSum=1.485;DP=87;MQRankSum=-1.779;QUALapprox=111;RAW_GT_COUNT=0,0,1;RAW_MQandDP=288537,87;ReadPosRankSum=0.790;VarDP=74 GT:AD:DP:GQ:PL:SB 1:36,38,0:74:99:111,0,1715:18,18,19,19 +chrX 1659033 . A *,G, 101.04 . AS_QUALapprox=|0|111|0;AS_VarDP=36|10|38|0;BaseQRankSum=1.707;DP=87;MQRankSum=-1.694;QUALapprox=111;RAW_GT_COUNT=0,0,1;RAW_MQandDP=288537,87;ReadPosRankSum=-0.470;VarDP=84 GT:AD:DP:GQ:PL:SB 2:36,10,38,0:84:99:111,1646,0,1715:18,18,24,24 +chrX 1659034 . G . . END=1659053 GT:DP:GQ:MIN_DP:PL 0:80:99:80:0,1731 +chrX 1659054 . A G, 2776.04 . AS_QUALapprox=|2786|0;AS_VarDP=0|73|0;DP=78;QUALapprox=2786;RAW_GT_COUNT=0,0,1;RAW_MQandDP=258056,78;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,73,0:73:99:2786,0,2901:0,0,33,32 +chrX 1659055 . A . . END=1659410 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,119 +chrX 1659411 . C CTT, 3268.01 . AS_QUALapprox=|3278|0;AS_VarDP=0|75|0;DP=77;QUALapprox=3278;RAW_GT_COUNT=0,0,1;RAW_MQandDP=277200,77;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,75,0:75:99:3278,0,3278:0,0,43,32 +chrX 1659412 . T . . END=1659526 GT:DP:GQ:MIN_DP:PL 0:85:99:85:0,1800 +chrX 1659527 . G A, 2971.04 . AS_QUALapprox=|2981|0;AS_VarDP=0|76|0;DP=80;QUALapprox=2981;RAW_GT_COUNT=0,0,1;RAW_MQandDP=288000,80;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,76,0:76:99:2981,0,2981:0,0,35,41 +chrX 1659528 . T . . END=1659542 GT:DP:GQ:MIN_DP:PL 0:77:99:77:0,1800 +chrX 1659543 . G C, 185.04 . AS_QUALapprox=|195|0;AS_VarDP=36|41|0;BaseQRankSum=0.564;DP=79;MQRankSum=0.000;QUALapprox=195;RAW_GT_COUNT=0,0,1;RAW_MQandDP=284400,79;ReadPosRankSum=-0.928;VarDP=77 GT:AD:DP:GQ:PL:SB 1:36,41,0:77:99:195,0,1804:17,19,19,22 +chrX 1659544 . T . . END=1659550 GT:DP:GQ:MIN_DP:PL 0:75:99:75:0,1800 +chrX 1659551 . TTGTG T, 60.01 . AS_QUALapprox=|70|0;AS_VarDP=37|39|0;BaseQRankSum=0.442;DP=77;MQRankSum=0.000;QUALapprox=70;RAW_GT_COUNT=0,0,1;RAW_MQandDP=277200,77;ReadPosRankSum=-0.832;VarDP=76 GT:AD:DP:GQ:PL:SB 1:37,39,0:76:70:70,0,1735:19,18,18,21 +chrX 1659556 . T . . END=1659638 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,119 +chrX 1659639 . G GTT, 75.01 . AS_QUALapprox=|85|0;AS_VarDP=32|34|0;BaseQRankSum=-1.064;DP=71;MQRankSum=0.000;QUALapprox=85;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;ReadPosRankSum=-0.777;VarDP=66 GT:AD:DP:GQ:PL:SB 1:32,34,0:66:85:85,0,1514:22,10,22,12 +chrX 1659640 . T . . END=1661155 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1169 +chrX 1661156 . A T, 304.04 . AS_QUALapprox=|314|0;AS_VarDP=17|24|0;BaseQRankSum=2.206;DP=45;MQRankSum=-1.170;QUALapprox=314;RAW_GT_COUNT=0,0,1;RAW_MQandDP=159130,45;ReadPosRankSum=-2.727;VarDP=41 GT:AD:DP:GQ:PL:SB 1:17,24,0:41:99:314,0,814:9,8,14,10 +chrX 1661157 . C . . END=1661604 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,1077 +chrX 1661605 . C . . END=1661605 GT:DP:GQ:MIN_DP:PL 0:62:19:62:0,19 +chrX 1661606 . C . . END=1662264 GT:DP:GQ:MIN_DP:PL 0:75:99:75:0,1436 +chrX 1662265 . C G, 115.04 . AS_QUALapprox=|125|0;AS_VarDP=30|34|0;BaseQRankSum=-0.447;DP=65;MQRankSum=1.096;QUALapprox=125;RAW_GT_COUNT=0,0,1;RAW_MQandDP=233425,65;ReadPosRankSum=0.310;VarDP=64 GT:AD:DP:GQ:PL:SB 1:30,34,0:64:99:125,0,1082:12,18,16,18 +chrX 1662266 . A . . END=1662451 GT:DP:GQ:MIN_DP:PL 0:43:99:43:0,525 +chrX 1662452 . T TAAAAA, 259.01 . AS_QUALapprox=|269|0;AS_VarDP=10|16|0;BaseQRankSum=0.423;DP=32;MQRankSum=-0.712;QUALapprox=269;RAW_GT_COUNT=0,0,1;RAW_MQandDP=113281,32;ReadPosRankSum=-0.899;VarDP=26 GT:AD:DP:GQ:PL:SB 1:10,16,0:26:99:269,0,709:6,4,8,8 +chrX 1662453 . A . . END=1662478 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,939 +chrX 1662479 . T C, 423.04 . AS_QUALapprox=|433|0;AS_VarDP=12|23|0;BaseQRankSum=1.935;DP=36;MQRankSum=0.000;QUALapprox=433;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129600,36;ReadPosRankSum=-0.487;VarDP=35 GT:AD:DP:GQ:PL:SB 1:12,23,0:35:99:433,0,780:5,7,11,12 +chrX 1662480 . C . . END=1662581 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,1264 +chrX 1662582 . A G, 253.04 . AS_QUALapprox=|263|0;AS_VarDP=24|32|0;BaseQRankSum=-0.384;DP=59;MQRankSum=0.000;QUALapprox=263;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;ReadPosRankSum=-0.663;VarDP=56 GT:AD:DP:GQ:PL:SB 1:24,32,0:56:99:263,0,1042:7,17,16,16 +chrX 1662583 . A . . END=1662688 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1570 +chrX 1662689 . A T, 549.04 . AS_QUALapprox=|559|0;AS_VarDP=21|33|0;BaseQRankSum=2.356;DP=58;MQRankSum=0.000;QUALapprox=559;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;ReadPosRankSum=-0.113;VarDP=54 GT:AD:DP:GQ:PL:SB 1:21,33,0:54:99:559,0,1331:12,9,17,16 +chrX 1662690 . T . . END=1662721 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1598 +chrX 1662722 . T G, 339.04 . AS_QUALapprox=|349|0;AS_VarDP=23|31|0;BaseQRankSum=-0.574;DP=57;MQRankSum=0.000;QUALapprox=349;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;ReadPosRankSum=1.705;VarDP=54 GT:AD:DP:GQ:PL:SB 1:23,31,0:54:99:349,0,1211:13,10,18,13 +chrX 1662723 . C . . END=1662776 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1547 +chrX 1662777 . A G, 584.04 . AS_QUALapprox=|594|0;AS_VarDP=18|39|0;BaseQRankSum=-1.924;DP=61;MQRankSum=0.000;QUALapprox=594;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;ReadPosRankSum=-3.203;VarDP=57 GT:AD:DP:GQ:PL:SB 1:18,39,0:57:99:594,0,1200:8,10,21,18 +chrX 1662778 . G . . END=1662877 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1215 +chrX 1662878 . TA T, 1082.01 . AS_QUALapprox=|1092|0;AS_VarDP=11|36|0;BaseQRankSum=-0.125;DP=48;MQRankSum=0.970;QUALapprox=1092;RAW_GT_COUNT=0,0,1;RAW_MQandDP=170009,48;ReadPosRankSum=0.669;VarDP=47 GT:AD:DP:GQ:PL:SB 1:11,36,0:47:99:1092,0,1587:5,6,18,18 +chrX 1662880 . TA T, 1037.01 . AS_QUALapprox=|1047|0;AS_VarDP=12|36|0;BaseQRankSum=-0.496;DP=49;MQRankSum=0.894;QUALapprox=1047;RAW_GT_COUNT=0,0,1;RAW_MQandDP=173609,49;ReadPosRankSum=0.824;VarDP=48 GT:AD:DP:GQ:PL:SB 1:12,36,0:48:99:1047,0,1587:5,7,18,18 +chrX 1662882 . T . . END=1662882 GT:DP:GQ:MIN_DP:PL 0:46:99:46:0,1569 +chrX 1662883 . A T, 1005.04 . AS_QUALapprox=|1015|0;AS_VarDP=12|35|0;BaseQRankSum=-1.152;DP=47;MQRankSum=0.872;QUALapprox=1015;RAW_GT_COUNT=0,0,1;RAW_MQandDP=166409,47;ReadPosRankSum=1.123;VarDP=47 GT:AD:DP:GQ:PL:SB 1:12,35,0:47:99:1015,0,1555:5,7,18,17 +chrX 1662884 . T . . END=1662884 GT:DP:GQ:MIN_DP:PL 0:44:99:44:0,1489 +chrX 1662885 . A T, 1025.04 . AS_QUALapprox=|1035|0;AS_VarDP=11|34|0;BaseQRankSum=0.481;DP=48;MQRankSum=-0.517;QUALapprox=1035;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172009,48;ReadPosRankSum=0.505;VarDP=45 GT:AD:DP:GQ:PL:SB 1:11,34,0:45:99:1035,0,1530:4,7,18,16 +chrX 1662886 . T . . END=1664365 GT:DP:GQ:MIN_DP:PL 0:64:49:60:0,49 +chrX 1664366 . A G, 243.04 . AS_QUALapprox=|253|0;AS_VarDP=25|31|0;BaseQRankSum=1.985;DP=56;MQRankSum=-1.256;QUALapprox=253;RAW_GT_COUNT=0,0,1;RAW_MQandDP=200458,56;ReadPosRankSum=0.214;VarDP=56 GT:AD:DP:GQ:PL:SB 1:25,31,0:56:99:253,0,1076:12,13,14,17 +chrX 1664367 . T . . END=1665864 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,421 +chrX 1665865 . C CT, 95.01 . AS_QUALapprox=|105|0;AS_VarDP=10|16|0;BaseQRankSum=-0.761;DP=39;MQRankSum=0.000;QUALapprox=105;RAW_GT_COUNT=0,0,1;RAW_MQandDP=138400,39;ReadPosRankSum=0.607;VarDP=26 GT:AD:DP:GQ:PL:SB 1:10,16,0:26:99:105,0,336:7,3,8,8 +chrX 1665866 . T . . END=1666380 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,815 +chrX 1666381 . C T, 90.04 . AS_QUALapprox=|100|0;AS_VarDP=33|36|0;BaseQRankSum=-0.462;DP=72;MQRankSum=0.000;QUALapprox=100;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;ReadPosRankSum=0.120;VarDP=69 GT:AD:DP:GQ:PL:SB 1:33,36,0:69:99:100,0,1191:22,11,21,15 +chrX 1666382 . G . . END=1670933 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,148 +chrX 1670934 . A G, 1670.04 . AS_QUALapprox=|1680|0;AS_VarDP=0|56|0;DP=60;QUALapprox=1680;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,56,0:56:99:1680,0,1680:0,0,29,27 +chrX 1670935 . A . . END=1671323 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1752 +chrX 1671324 . C T, 2934.04 . AS_QUALapprox=|2944|0;AS_VarDP=0|89|0;DP=91;QUALapprox=2944;RAW_GT_COUNT=0,0,1;RAW_MQandDP=322638,91;VarDP=89 GT:AD:DP:GQ:PL:SB 1:0,89,0:89:99:2944,0,2944:0,0,50,39 +chrX 1671325 . C . . END=1671570 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1800 +chrX 1671571 . A G, 1853.04 . AS_QUALapprox=|1863|0;AS_VarDP=0|60|0;DP=63;QUALapprox=1863;RAW_GT_COUNT=0,0,1;RAW_MQandDP=220309,63;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:1863,0,1863:0,0,27,33 +chrX 1671572 . T . . END=1671765 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1800 +chrX 1671766 . G A, 2098.04 . AS_QUALapprox=|2108|0;AS_VarDP=1|64|0;BaseQRankSum=2.723;DP=66;MQRankSum=0.000;QUALapprox=2108;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;ReadPosRankSum=0.720;VarDP=65 GT:AD:DP:GQ:PL:SB 1:1,64,0:65:99:2108,0,2117:1,0,29,35 +chrX 1671767 . A . . END=1672054 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1582 +chrX 1672055 . C G, 1851.04 . AS_QUALapprox=|1861|0;AS_VarDP=0|56|0;DP=59;QUALapprox=1861;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,56,0:56:99:1861,0,1861:0,0,34,22 +chrX 1672056 . T . . END=1672555 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,1245 +chrX 1672556 . GTC G, 1791.01 . AS_QUALapprox=|1801|0;AS_VarDP=0|45|0;DP=65;QUALapprox=1801;RAW_GT_COUNT=0,0,1;RAW_MQandDP=232000,65;VarDP=45 GT:AD:DP:GQ:PL:SB 1:0,45,0:45:99:1801,0,2302:0,0,31,14 +chrX 1672559 . T . . END=1672569 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1061 +chrX 1672570 . C CTGTG, 2181.01 . AS_QUALapprox=|2355|0;AS_VarDP=0|55|0;DP=63;QUALapprox=2355;RAW_GT_COUNT=0,0,1;RAW_MQandDP=224800,63;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:2355,0,2260:0,0,28,13 +chrX 1672571 . T . . END=1673389 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1265 +chrX 1673390 . T C, 1856.04 . AS_QUALapprox=|1866|0;AS_VarDP=0|56|0;DP=58;QUALapprox=1866;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,56,0:56:99:1866,0,1866:0,0,32,24 +chrX 1673391 . A . . END=1674195 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1504 +chrX 1674196 . C CTTT, 1529.01 . AS_QUALapprox=|1539|0;AS_VarDP=1|40|0;BaseQRankSum=2.266;DP=54;MQRankSum=0.000;QUALapprox=1539;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;ReadPosRankSum=-0.042;VarDP=41 GT:AD:DP:GQ:PL:SB 1:1,40,0:41:99:1539,0,1551:0,1,20,20 +chrX 1674197 . T . . END=1675439 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,810 +chrX 1675440 . A G, 1646.04 . AS_QUALapprox=|1656|0;AS_VarDP=0|54|0;DP=56;QUALapprox=1656;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=54 GT:AD:DP:GQ:PL:SB 1:0,54,0:54:99:1656,0,1656:0,0,27,27 +chrX 1675441 . T . . END=1675608 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1290 +chrX 1675609 . G GTGTATATA, 1831.01 . AS_QUALapprox=|1841|0;AS_VarDP=0|44|0;DP=48;QUALapprox=1841;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=44 GT:AD:DP:GQ:PL:SB 1:0,44,0:44:99:1841,0,1842:0,0,21,23 +chrX 1675610 . T . . END=1675708 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,993 +chrX 1675709 . C T, 166.04 . AS_QUALapprox=|176|0;AS_VarDP=20|23|0;BaseQRankSum=1.385;DP=44;MQRankSum=0.000;QUALapprox=176;RAW_GT_COUNT=0,0,1;RAW_MQandDP=155241,44;ReadPosRankSum=-1.243;VarDP=43 GT:AD:DP:GQ:PL:SB 1:20,23,0:43:99:176,0,955:7,13,11,12 +chrX 1675710 . G . . END=1675713 GT:DP:GQ:MIN_DP:PL 0:42:99:42:0,1147 +chrX 1675714 . CT C, 116.01 . AS_QUALapprox=|126|0;AS_VarDP=22|23|0;BaseQRankSum=-1.554;DP=47;MQRankSum=1.067;QUALapprox=126;RAW_GT_COUNT=0,0,1;RAW_MQandDP=164041,47;ReadPosRankSum=-0.013;VarDP=45 GT:AD:DP:GQ:PL:SB 1:22,23,0:45:99:126,0,955:8,14,11,12 +chrX 1675716 . T . . END=1675911 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1228 +chrX 1675912 . G A, 1936.04 . AS_QUALapprox=|1946|0;AS_VarDP=0|59|0;DP=61;QUALapprox=1946;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216450,61;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:1946,0,1946:0,0,34,25 +chrX 1675913 . T . . END=1676369 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,154 +chrX 1676370 . GTATATATA G,GTATATATATATA,GTATATATATATATA, 1407.01 . AS_QUALapprox=|1417|692|326|0;AS_VarDP=1|37|14|1|0;BaseQRankSum=-0.522;DP=70;MQRankSum=0.000;QUALapprox=1417;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;ReadPosRankSum=-0.654;VarDP=53 GT:AD:DP:GQ:PL:SB 1:1,37,14,1,0:53:99:1417,0,725,1091,1469:0,1,24,28 +chrX 1676379 . T . . END=1676535 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,442 +chrX 1676536 . C A, 2271.04 . AS_QUALapprox=|2281|0;AS_VarDP=0|60|0;DP=62;QUALapprox=2281;RAW_GT_COUNT=0,0,1;RAW_MQandDP=222625,62;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:2281,0,2281:0,0,27,33 +chrX 1676537 . A . . END=1676638 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1800 +chrX 1676639 . G A, 274.04 . AS_QUALapprox=|284|0;AS_VarDP=25|35|0;BaseQRankSum=-1.030;DP=61;MQRankSum=0.330;QUALapprox=284;RAW_GT_COUNT=0,0,1;RAW_MQandDP=215875,61;ReadPosRankSum=-1.621;VarDP=60 GT:AD:DP:GQ:PL:SB 1:25,35,0:60:99:284,0,1130:13,12,15,20 +chrX 1676640 . A . . END=1676996 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,140 +chrX 1676997 . G A, 293.04 . AS_QUALapprox=|303|0;AS_VarDP=28|36|0;BaseQRankSum=0.961;DP=65;MQRankSum=0.000;QUALapprox=303;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;ReadPosRankSum=0.609;VarDP=64 GT:AD:DP:GQ:PL:SB 1:28,36,0:64:99:303,0,1169:15,13,21,15 +chrX 1676998 . A . . END=1677028 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1677 +chrX 1677029 . A G, 163.04 . AS_QUALapprox=|173|0;AS_VarDP=25|32|0;BaseQRankSum=-0.569;DP=59;MQRankSum=0.000;QUALapprox=173;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;ReadPosRankSum=0.378;VarDP=57 GT:AD:DP:GQ:PL:SB 1:25,32,0:57:99:173,0,962:11,14,17,15 +chrX 1677030 . G . . END=1677445 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1394 +chrX 1677446 . C CT,CTT, 486 . AS_QUALapprox=|480|496|0;AS_VarDP=1|10|12|0;BaseQRankSum=-0.443;DP=45;MQRankSum=0.000;QUALapprox=496;RAW_GT_COUNT=0,0,1;RAW_MQandDP=150725,45;ReadPosRankSum=1.132;VarDP=23 GT:AD:DP:GQ:PL:SB 2:1,10,12,0:23:16:496,16,0,372:0,1,5,17 +chrX 1677447 . T . . END=1677615 GT:DP:GQ:MIN_DP:PL 0:46:99:46:0,886 +chrX 1677616 . C T, 1499.04 . AS_QUALapprox=|1509|0;AS_VarDP=0|46|0;DP=47;QUALapprox=1509;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;VarDP=46 GT:AD:DP:GQ:PL:SB 1:0,46,0:46:99:1509,0,1509:0,0,25,21 +chrX 1677617 . T . . END=1677716 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,1230 +chrX 1677717 . G A, 332.04 . AS_QUALapprox=|342|0;AS_VarDP=22|33|0;BaseQRankSum=-0.694;DP=56;MQRankSum=0.000;QUALapprox=342;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;ReadPosRankSum=1.762;VarDP=55 GT:AD:DP:GQ:PL:SB 1:22,33,0:55:99:342,0,1077:13,9,18,15 +chrX 1677718 . G . . END=1678251 GT:DP:GQ:MIN_DP:PL 0:67:24:66:0,24 +chrX 1678252 . GA G,AA, 413.01 . AS_QUALapprox=|423|0|0;AS_VarDP=1|24|17|0;BaseQRankSum=-0.644;DP=60;MQRankSum=-0.112;QUALapprox=423;RAW_GT_COUNT=0,0,1;RAW_MQandDP=211425,60;ReadPosRankSum=-1.610;VarDP=42 GT:AD:DP:GQ:PL:SB 1:1,24,17,0:42:99:423,0,514,819:1,0,17,24 +chrX 1678254 . A . . END=1678320 GT:DP:GQ:MIN_DP:PL 0:46:99:46:0,1205 +chrX 1678321 . T C, 1656.04 . AS_QUALapprox=|1666|0;AS_VarDP=0|54|0;DP=55;QUALapprox=1666;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194034,55;VarDP=54 GT:AD:DP:GQ:PL:SB 1:0,54,0:54:99:1666,0,1666:0,0,29,25 +chrX 1678322 . G . . END=1678941 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,501 +chrX 1678942 . C G, 428.04 . AS_QUALapprox=|438|0;AS_VarDP=30|41|0;BaseQRankSum=2.007;DP=74;MQRankSum=0.000;QUALapprox=438;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;ReadPosRankSum=0.169;VarDP=71 GT:AD:DP:GQ:PL:SB 1:30,41,0:71:99:438,0,1405:11,19,27,14 +chrX 1678943 . A . . END=1679066 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1260 +chrX 1679067 . A G,AG, 1055.04 . AS_QUALapprox=|1065|974|0;AS_VarDP=0|30|28|0;DP=69;QUALapprox=1065;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,30,28,0:58:91:1065,0,91,1208:0,0,30,28 +chrX 1679068 . G . . END=1680175 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,214 +chrX 1680176 . C T, 90.04 . AS_QUALapprox=|100|0;AS_VarDP=35|36|0;BaseQRankSum=0.806;DP=73;MQRankSum=-0.964;QUALapprox=100;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255904,73;ReadPosRankSum=-0.155;VarDP=71 GT:AD:DP:GQ:PL:SB 1:35,36,0:71:99:100,0,1190:17,18,20,16 +chrX 1680177 . G . . END=1681123 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,517 +chrX 1681124 . C CA, 3715.01 . AS_QUALapprox=|3725|0;AS_VarDP=0|83|0;DP=83;QUALapprox=3725;RAW_GT_COUNT=0,0,1;RAW_MQandDP=297650,83;VarDP=83 GT:AD:DP:GQ:PL:SB 1:0,83,0:83:99:3725,0,3725:0,0,46,37 +chrX 1681125 . C . . END=1681126 GT:DP:GQ:MIN_DP:PL 0:82:99:82:0,1800 +chrX 1681127 . G A, 3715.04 . AS_QUALapprox=|3725|0;AS_VarDP=0|83|0;DP=83;QUALapprox=3725;RAW_GT_COUNT=0,0,1;RAW_MQandDP=297650,83;VarDP=83 GT:AD:DP:GQ:PL:SB 1:0,83,0:83:99:3725,0,3725:0,0,46,37 +chrX 1681128 . C . . END=1681952 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,119 +chrX 1681953 . T . . END=1681953 GT:DP:GQ:MIN_DP:PL 0:16:0:16:0,0 +chrX 1681954 . T . . END=1681969 GT:DP:GQ:MIN_DP:PL 0:15:99:15:0,194 +chrX 1681970 . C . . END=1681970 GT:DP:GQ:MIN_DP:PL 0:15:0:15:0,0 +chrX 1681971 . C . . END=1682230 GT:DP:GQ:MIN_DP:PL 0:20:35:15:0,35 +chrX 1682231 . C T,CTCTCTCTCTCTCTCTCTTTT, 71.01 . AS_QUALapprox=|0|81|0;AS_VarDP=21|0|2|0;BaseQRankSum=-0.950;DP=51;MQRankSum=0.463;QUALapprox=81;RAW_GT_COUNT=0,0,1;RAW_MQandDP=173352,51;ReadPosRankSum=0.382;VarDP=23 GT:AD:DP:GQ:PL:SB 2:21,0,2,0:23:81:81,82,0,538:11,10,2,0 +chrX 1682232 . T . . END=1682496 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1255 +chrX 1682497 . G A, 174.04 . AS_QUALapprox=|184|0;AS_VarDP=20|26|0;BaseQRankSum=-0.682;DP=51;MQRankSum=0.251;QUALapprox=184;RAW_GT_COUNT=0,0,1;RAW_MQandDP=181729,51;ReadPosRankSum=-1.086;VarDP=46 GT:AD:DP:GQ:PL:SB 1:20,26,0:46:99:184,0,823:11,9,13,13 +chrX 1682498 . T . . END=1684242 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,978 +chrX 1684243 . T C, 2063.04 . AS_QUALapprox=|2073|0;AS_VarDP=0|64|0;DP=66;QUALapprox=2073;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,64,0:64:99:2073,0,2073:0,0,30,34 +chrX 1684244 . T . . END=1684780 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1388 +chrX 1684781 . C A, 238.04 . AS_QUALapprox=|248|0;AS_VarDP=26|32|0;BaseQRankSum=1.756;DP=60;MQRankSum=0.000;QUALapprox=248;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;ReadPosRankSum=-0.430;VarDP=58 GT:AD:DP:GQ:PL:SB 1:26,32,0:58:99:248,0,1081:12,14,15,17 +chrX 1684782 . T . . END=1686634 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,284 +chrX 1686635 . C T, 283.04 . AS_QUALapprox=|293|0;AS_VarDP=29|37|0;BaseQRankSum=1.348;DP=68;MQRankSum=0.000;QUALapprox=293;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;ReadPosRankSum=1.777;VarDP=66 GT:AD:DP:GQ:PL:SB 1:29,37,0:66:99:293,0,1221:13,16,19,18 +chrX 1686636 . A . . END=1686686 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1800 +chrX 1686687 . T C, 227.04 . AS_QUALapprox=|237|0;AS_VarDP=26|35|0;BaseQRankSum=-0.984;DP=63;MQRankSum=0.000;QUALapprox=237;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;ReadPosRankSum=0.073;VarDP=61 GT:AD:DP:GQ:PL:SB 1:26,35,0:61:99:237,0,1081:14,12,19,16 +chrX 1686688 . G . . END=1687284 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,962 +chrX 1687285 . T TAAAAAAAAA,TAAAAAAAAAA, 55 . AS_QUALapprox=|65|46|0;AS_VarDP=15|2|1|0;BaseQRankSum=-1.085;DP=43;MQRankSum=-2.087;QUALapprox=65;RAW_GT_COUNT=0,0,1;RAW_MQandDP=146025,43;ReadPosRankSum=0.474;VarDP=18 GT:AD:DP:GQ:PL:SB 1:15,2,1,0:18:19:65,0,19,390:7,8,2,1 +chrX 1687286 . A . . END=1687592 GT:DP:GQ:MIN_DP:PL 0:57:20:42:0,20 +chrX 1687593 . A AT, 301.01 . AS_QUALapprox=|311|0;AS_VarDP=16|27|0;BaseQRankSum=-0.230;DP=45;MQRankSum=2.717;QUALapprox=311;RAW_GT_COUNT=0,0,1;RAW_MQandDP=155269,45;ReadPosRankSum=-1.596;VarDP=43 GT:AD:DP:GQ:PL:SB 1:16,27,0:43:99:311,0,970:6,10,13,14 +chrX 1687594 . A . . END=1687803 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,158 +chrX 1687804 . A G, 134.04 . AS_QUALapprox=|144|0;AS_VarDP=29|33|0;BaseQRankSum=0.807;DP=68;MQRankSum=-1.314;QUALapprox=144;RAW_GT_COUNT=0,0,1;RAW_MQandDP=240915,68;ReadPosRankSum=1.552;VarDP=62 GT:AD:DP:GQ:PL:SB 1:29,33,0:62:99:144,0,1072:12,17,14,19 +chrX 1687805 . A . . END=1688101 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1627 +chrX 1688102 . T G, 274.04 . AS_QUALapprox=|284|0;AS_VarDP=21|27|0;BaseQRankSum=2.731;DP=52;MQRankSum=0.000;QUALapprox=284;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;ReadPosRankSum=2.069;VarDP=48 GT:AD:DP:GQ:PL:SB 1:21,27,0:48:99:284,0,929:11,10,14,13 +chrX 1688103 . G . . END=1688284 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1717 +chrX 1688285 . C T, 413.04 . AS_QUALapprox=|423|0;AS_VarDP=26|37|0;BaseQRankSum=2.007;DP=68;MQRankSum=0.000;QUALapprox=423;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;ReadPosRankSum=-1.536;VarDP=63 GT:AD:DP:GQ:PL:SB 1:26,37,0:63:99:423,0,1256:13,13,26,11 +chrX 1688286 . G . . END=1688515 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1800 +chrX 1688516 . C A, 367.04 . AS_QUALapprox=|377|0;AS_VarDP=22|35|0;BaseQRankSum=-0.841;DP=60;MQRankSum=0.000;QUALapprox=377;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;ReadPosRankSum=-0.795;VarDP=57 GT:AD:DP:GQ:PL:SB 1:22,35,0:57:99:377,0,1086:9,13,16,19 +chrX 1688517 . A . . END=1689817 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,334 +chrX 1689818 . G A, 194.04 . AS_QUALapprox=|204|0;AS_VarDP=20|27|0;BaseQRankSum=-0.355;DP=51;MQRankSum=1.423;QUALapprox=204;RAW_GT_COUNT=0,0,1;RAW_MQandDP=178843,51;ReadPosRankSum=0.387;VarDP=47 GT:AD:DP:GQ:PL:SB 1:20,27,0:47:99:204,0,887:5,15,9,18 +chrX 1689819 . T . . END=1692252 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,234 +chrX 1692253 . C . . END=1692253 GT:DP:GQ:MIN_DP:PL 0:49:0:49:0,0 +chrX 1692254 . G . . END=1692359 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,1330 +chrX 1692360 . A G, 64.04 . AS_QUALapprox=|74|0;AS_VarDP=27|31|0;BaseQRankSum=-1.764;DP=58;MQRankSum=0.000;QUALapprox=74;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;ReadPosRankSum=1.864;VarDP=58 GT:AD:DP:GQ:PL:SB 1:27,31,0:58:74:74,0,947:13,14,16,15 +chrX 1692361 . T . . END=1692395 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1634 +chrX 1692396 . A G, 0.50 . AS_QUALapprox=|9|0;AS_VarDP=34|37|0;BaseQRankSum=-1.908;DP=71;MQRankSum=0.000;QUALapprox=9;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;ReadPosRankSum=-0.294;VarDP=71 GT:AD:DP:GQ:PL:SB 1:34,37,0:71:9:9,0,1130:15,19,18,19 +chrX 1692397 . G . . END=1692439 GT:DP:GQ:MIN_DP:PL 0:74:99:74:0,1800 +chrX 1692440 . G T, 29.04 . AS_QUALapprox=|39|0;AS_VarDP=36|37|0;BaseQRankSum=-0.135;DP=74;MQRankSum=0.000;QUALapprox=39;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;ReadPosRankSum=-0.618;VarDP=73 GT:AD:DP:GQ:PL:SB 1:36,37,0:73:39:39,0,1195:20,16,22,15 +chrX 1692441 . G . . END=1692562 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1598 +chrX 1692563 . C CA, 236.01 . AS_QUALapprox=|246|0;AS_VarDP=22|32|0;BaseQRankSum=-0.792;DP=57;MQRankSum=0.000;QUALapprox=246;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;ReadPosRankSum=-0.449;VarDP=54 GT:AD:DP:GQ:PL:SB 1:22,32,0:54:99:246,0,832:13,9,17,15 +chrX 1692564 . A . . END=1692611 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1800 +chrX 1692612 . C T, 268.04 . AS_QUALapprox=|278|0;AS_VarDP=27|36|0;BaseQRankSum=-0.230;DP=64;MQRankSum=0.000;QUALapprox=278;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;ReadPosRankSum=0.479;VarDP=63 GT:AD:DP:GQ:PL:SB 1:27,36,0:63:99:278,0,1176:18,9,18,18 +chrX 1692613 . T . . END=1692941 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,221 +chrX 1692942 . T A, 115.04 . AS_QUALapprox=|125|0;AS_VarDP=24|28|0;BaseQRankSum=0.166;DP=53;MQRankSum=-1.613;QUALapprox=125;RAW_GT_COUNT=0,0,1;RAW_MQandDP=188857,53;ReadPosRankSum=0.349;VarDP=52 GT:AD:DP:GQ:PL:SB 1:24,28,0:52:99:125,0,928:11,13,10,18 +chrX 1692943 . G . . END=1693001 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1609 +chrX 1693002 . AT A, 1423.01 . AS_QUALapprox=|1433|0;AS_VarDP=0|46|0;DP=54;QUALapprox=1433;RAW_GT_COUNT=0,0,1;RAW_MQandDP=193032,54;VarDP=46 GT:AD:DP:GQ:PL:SB 1:0,46,0:46:99:1433,0,1433:0,0,21,25 +chrX 1693004 . T . . END=1693403 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,228 +chrX 1693404 . CT C, 0.02 . AS_QUALapprox=|3|0;AS_VarDP=28|27|0;BaseQRankSum=-0.439;DP=62;MQRankSum=-0.026;QUALapprox=3;RAW_GT_COUNT=0,0,1;RAW_MQandDP=220625,62;ReadPosRankSum=1.061;VarDP=55 GT:AD:DP:GQ:PL:SB 1:28,27,0:55:3:3,0,751:16,12,17,10 +chrX 1693406 . T . . END=1693853 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,199 +chrX 1693854 . A C, 452.04 . AS_QUALapprox=|462|0;AS_VarDP=28|42|0;BaseQRankSum=-0.837;DP=73;MQRankSum=0.000;QUALapprox=462;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;ReadPosRankSum=0.372;VarDP=70 GT:AD:DP:GQ:PL:SB 1:28,42,0:70:99:462,0,1400:8,20,21,21 +chrX 1693855 . T . . END=1693891 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1800 +chrX 1693892 . G A, 576.04 . AS_QUALapprox=|586|0;AS_VarDP=26|44|0;BaseQRankSum=-0.289;DP=71;MQRankSum=0.000;QUALapprox=586;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;ReadPosRankSum=1.332;VarDP=70 GT:AD:DP:GQ:PL:SB 1:26,44,0:70:99:586,0,1383:9,17,19,25 +chrX 1693893 . C . . END=1693905 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1800 +chrX 1693906 . C T, 467.04 . AS_QUALapprox=|477|0;AS_VarDP=30|45|0;BaseQRankSum=-0.308;DP=78;MQRankSum=0.000;QUALapprox=477;RAW_GT_COUNT=0,0,1;RAW_MQandDP=280800,78;ReadPosRankSum=1.574;VarDP=75 GT:AD:DP:GQ:PL:SB 1:30,45,0:75:99:477,0,1424:9,21,16,29 +chrX 1693907 . G . . END=1694070 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1557 +chrX 1694071 . G A, 135.04 . AS_QUALapprox=|145|0;AS_VarDP=26|28|0;BaseQRankSum=2.684;DP=56;MQRankSum=0.053;QUALapprox=145;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198786,56;ReadPosRankSum=-0.320;VarDP=54 GT:AD:DP:GQ:PL:SB 1:26,28,0:54:99:145,0,973:18,8,20,8 +chrX 1694072 . C . . END=1694600 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1414 +chrX 1694601 . T G, 2467.04 . AS_QUALapprox=|2477|0;AS_VarDP=0|56|0;DP=59;QUALapprox=2477;RAW_GT_COUNT=0,0,1;RAW_MQandDP=210400,59;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,56,0:56:99:2477,0,2477:0,0,30,26 +chrX 1694602 . A . . END=1694605 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1722 +chrX 1694606 . T C, 2468.04 . AS_QUALapprox=|2478|0;AS_VarDP=0|56|0;DP=56;QUALapprox=2478;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,56,0:56:99:2478,0,2478:0,0,30,26 +chrX 1694607 . G . . END=1694791 GT:DP:GQ:MIN_DP:PL 0:75:99:75:0,1800 +chrX 1694792 . C G, 335.04 . AS_QUALapprox=|345|0;AS_VarDP=34|48|0;BaseQRankSum=-2.739;DP=83;MQRankSum=0.000;QUALapprox=345;RAW_GT_COUNT=0,0,1;RAW_MQandDP=298800,83;ReadPosRankSum=-0.377;VarDP=82 GT:AD:DP:GQ:PL:SB 1:34,48,0:82:99:345,0,1496:17,17,31,17 +chrX 1694793 . C . . END=1694961 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1800 +chrX 1694962 . T A, 95.04 . AS_QUALapprox=|105|0;AS_VarDP=30|33|0;BaseQRankSum=0.192;DP=65;MQRankSum=0.000;QUALapprox=105;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;ReadPosRankSum=-0.344;VarDP=63 GT:AD:DP:GQ:PL:SB 1:30,33,0:63:99:105,0,1087:15,15,14,19 +chrX 1694963 . A . . END=1695153 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1718 +chrX 1695154 . T C, 238.04 . AS_QUALapprox=|248|0;AS_VarDP=22|30|0;BaseQRankSum=-0.767;DP=57;MQRankSum=0.000;QUALapprox=248;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;ReadPosRankSum=0.713;VarDP=52 GT:AD:DP:GQ:PL:SB 1:22,30,0:52:99:248,0,993:11,11,20,10 +chrX 1695155 . C . . END=1695325 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1427 +chrX 1695326 . A G, 1901.04 . AS_QUALapprox=|1911|0;AS_VarDP=1|58|0;BaseQRankSum=2.728;DP=61;MQRankSum=0.000;QUALapprox=1911;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;ReadPosRankSum=0.969;VarDP=59 GT:AD:DP:GQ:PL:SB 1:1,58,0:59:99:1911,0,1921:0,1,14,44 +chrX 1695327 . C . . END=1695380 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1800 +chrX 1695381 . T C, 1949.04 . AS_QUALapprox=|1959|0;AS_VarDP=0|61|0;DP=63;QUALapprox=1959;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,61,0:61:99:1959,0,1959:0,0,25,36 +chrX 1695382 . A . . END=1695393 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1800 +chrX 1695394 . A G, 2112.04 . AS_QUALapprox=|2122|0;AS_VarDP=0|66|0;DP=67;QUALapprox=2122;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=66 GT:AD:DP:GQ:PL:SB 1:0,66,0:66:99:2122,0,2122:0,0,29,37 +chrX 1695395 . T . . END=1695485 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1677 +chrX 1695486 . T C, 1573.04 . AS_QUALapprox=|1583|0;AS_VarDP=0|50|0;DP=51;QUALapprox=1583;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,50,0:50:99:1583,0,1583:0,0,29,21 +chrX 1695487 . C . . END=1695847 GT:DP:GQ:MIN_DP:PL 0:44:99:44:0,1021 +chrX 1695848 . A G, 1666.04 . AS_QUALapprox=|1676|0;AS_VarDP=0|55|0;DP=56;QUALapprox=1676;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:1676,0,1676:0,0,30,25 +chrX 1695849 . T . . END=1695917 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1427 +chrX 1695918 . C CTT, 1001.01 . AS_QUALapprox=|1011|0;AS_VarDP=0|38|0;DP=53;QUALapprox=1011;RAW_GT_COUNT=0,0,1;RAW_MQandDP=188800,53;VarDP=38 GT:AD:DP:GQ:PL:SB 1:0,38,0:38:99:1011,0,1011:0,0,24,14 +chrX 1695919 . T . . END=1695971 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,704 +chrX 1695972 . A C, 237.04 . AS_QUALapprox=|247|0;AS_VarDP=12|21|0;BaseQRankSum=-0.911;DP=34;MQRankSum=-0.693;QUALapprox=247;RAW_GT_COUNT=0,0,1;RAW_MQandDP=121825,34;ReadPosRankSum=-0.225;VarDP=33 GT:AD:DP:GQ:PL:SB 1:12,21,0:33:99:247,0,629:5,7,11,10 +chrX 1695973 . T . . END=1696117 GT:DP:GQ:MIN_DP:PL 0:44:99:44:0,1047 +chrX 1696118 . T C, 149.04 . AS_QUALapprox=|159|0;AS_VarDP=20|24|0;BaseQRankSum=0.707;DP=50;MQRankSum=-1.273;QUALapprox=159;RAW_GT_COUNT=0,0,1;RAW_MQandDP=166877,50;ReadPosRankSum=0.861;VarDP=44 GT:AD:DP:GQ:PL:SB 1:20,24,0:44:99:159,0,824:9,11,9,15 +chrX 1696119 . A . . END=1696809 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1080 +chrX 1696810 . C T, 1098.04 . AS_QUALapprox=|1108|0;AS_VarDP=0|34|0;DP=34;QUALapprox=1108;RAW_GT_COUNT=0,0,1;RAW_MQandDP=70920,34;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1108,0,1108:0,0,3,31 +chrX 1696811 . T . . END=1696896 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,675 +chrX 1696897 . C G, 712.04 . AS_QUALapprox=|722|0;AS_VarDP=0|21|0;DP=22;QUALapprox=722;RAW_GT_COUNT=0,0,1;RAW_MQandDP=31678,22;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:722,0,722:0,0,0,21 +chrX 1696898 . A . . END=1697906 GT:DP:GQ:MIN_DP:PL 0:3:35:2:0,35 +chrX 1697907 . T . . END=1697943 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1697944 . T . . END=1698154 GT:DP:GQ:MIN_DP:PL 0:3:35:1:0,35 +chrX 1698155 . A . . END=1698237 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1698238 . C . . END=1698239 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 1698240 . T . . END=1698240 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1698241 . G . . END=1699136 GT:DP:GQ:MIN_DP:PL 0:12:35:1:0,35 +chrX 1699137 . A . . END=1699137 GT:DP:GQ:MIN_DP:PL 0:65:12:65:0,12 +chrX 1699138 . C . . END=1700527 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,139 +chrX 1700528 . T A, 1958.04 . AS_QUALapprox=|1968|0;AS_VarDP=0|64|0;DP=66;QUALapprox=1968;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237025,66;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,64,0:64:99:1968,0,1968:0,0,32,32 +chrX 1700529 . C . . END=1701064 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1377 +chrX 1701065 . G A, 135.04 . AS_QUALapprox=|145|0;AS_VarDP=27|29|0;BaseQRankSum=1.986;DP=58;MQRankSum=0.000;QUALapprox=145;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;ReadPosRankSum=-0.935;VarDP=56 GT:AD:DP:GQ:PL:SB 1:27,29,0:56:99:145,0,953:12,15,15,14 +chrX 1701066 . T . . END=1701093 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1628 +chrX 1701094 . G GTT, 323.01 . AS_QUALapprox=|333|0;AS_VarDP=10|24|0;BaseQRankSum=1.363;DP=62;MQRankSum=-1.114;QUALapprox=333;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216625,62;ReadPosRankSum=-1.589;VarDP=34 GT:AD:DP:GQ:PL:SB 1:10,24,0:34:99:333,0,629:1,9,15,9 +chrX 1701095 . T . . END=1701639 GT:DP:GQ:MIN_DP:PL 0:57:33:55:0,33 +chrX 1701640 . A AGTGGCCTCTGCCAGGTGTCTCCAGTGTTGATGACTCAGCGGAG, 641.01 . AS_QUALapprox=|651|0;AS_VarDP=12|28|0;BaseQRankSum=-1.514;DP=73;MQRankSum=0.346;QUALapprox=651;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234895,73;ReadPosRankSum=-2.189;VarDP=40 GT:AD:DP:GQ:PL:SB 1:12,28,0:40:99:651,0,1100:8,4,8,20 +chrX 1701641 . G . . END=1701728 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,203 +chrX 1701729 . A . . END=1701729 GT:DP:GQ:MIN_DP:PL 0:39:0:39:0,0 +chrX 1701730 . G . . END=1702029 GT:DP:GQ:MIN_DP:PL 0:20:99:20:0,373 +chrX 1702030 . G A, 396.04 . AS_QUALapprox=|406|0;AS_VarDP=1|12|0;BaseQRankSum=-0.491;DP=13;MQRankSum=-0.134;QUALapprox=406;RAW_GT_COUNT=0,0,1;RAW_MQandDP=15347,13;ReadPosRankSum=-0.535;VarDP=13 GT:AD:DP:GQ:PL:SB 1:1,12,0:13:99:406,0,431:1,0,7,5 +chrX 1702031 . G . . END=1702037 GT:DP:GQ:MIN_DP:PL 0:12:99:12:0,338 +chrX 1702038 . T C, 342.04 . AS_QUALapprox=|352|0;AS_VarDP=1|10|0;BaseQRankSum=2.021;DP=11;MQRankSum=-0.159;QUALapprox=352;RAW_GT_COUNT=0,0,1;RAW_MQandDP=11306,11;ReadPosRankSum=0.316;VarDP=11 GT:AD:DP:GQ:PL:SB 1:1,10,0:11:99:352,0,377:1,0,7,3 +chrX 1702039 . C . . END=1702065 GT:DP:GQ:MIN_DP:PL 0:12:99:12:0,352 +chrX 1702066 . C T, 269.04 . AS_QUALapprox=|279|0;AS_VarDP=5|9|0;BaseQRankSum=-1.198;DP=15;MQRankSum=0.322;QUALapprox=279;RAW_GT_COUNT=0,0,1;RAW_MQandDP=18527,15;ReadPosRankSum=3.481;VarDP=14 GT:AD:DP:GQ:PL:SB 1:5,9,0:14:99:279,0,347:3,2,7,2 +chrX 1702067 . G . . END=1702168 GT:DP:GQ:MIN_DP:PL 0:16:99:16:0,382 +chrX 1702169 . G C, 351.04 . AS_QUALapprox=|361|0;AS_VarDP=3|15|0;BaseQRankSum=0.923;DP=19;MQRankSum=1.426;QUALapprox=361;RAW_GT_COUNT=0,0,1;RAW_MQandDP=44859,19;ReadPosRankSum=1.900;VarDP=18 GT:AD:DP:GQ:PL:SB 1:3,15,0:18:99:361,0,430:2,1,11,4 +chrX 1702170 . G . . END=1702567 GT:DP:GQ:MIN_DP:PL 0:23:50:23:0,50 +chrX 1702568 . A . . END=1702568 GT:DP:GQ:MIN_DP:PL 0:34:0:34:0,0 +chrX 1702569 . T . . END=1702577 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,982 +chrX 1702578 . T . . END=1702578 GT:DP:GQ:MIN_DP:PL 0:32:0:32:0,0 +chrX 1702579 . G . . END=1706451 GT:DP:GQ:MIN_DP:PL 0:51:40:48:0,40 +chrX 1706452 . T G, 84.04 . AS_QUALapprox=|94|0;AS_VarDP=24|26|0;BaseQRankSum=-0.392;DP=51;MQRankSum=-1.002;QUALapprox=94;RAW_GT_COUNT=0,0,1;RAW_MQandDP=120243,51;ReadPosRankSum=0.554;VarDP=50 GT:AD:DP:GQ:PL:SB 1:24,26,0:50:94:94,0,1169:9,15,15,11 +chrX 1706453 . C T, 84.04 . AS_QUALapprox=|94|0;AS_VarDP=24|26|0;BaseQRankSum=-0.392;DP=50;MQRankSum=-1.002;QUALapprox=94;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118307,50;ReadPosRankSum=0.670;VarDP=50 GT:AD:DP:GQ:PL:SB 1:24,26,0:50:94:94,0,1169:9,15,15,11 +chrX 1706454 . C . . END=1706605 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1740 +chrX 1706606 . A G, 70.04 . AS_QUALapprox=|80|0;AS_VarDP=28|29|0;BaseQRankSum=1.081;DP=59;MQRankSum=-4.316;QUALapprox=80;RAW_GT_COUNT=0,0,1;RAW_MQandDP=168674,59;ReadPosRankSum=-0.351;VarDP=57 GT:AD:DP:GQ:PL:SB 1:28,29,0:57:80:80,0,953:15,13,16,13 +chrX 1706607 . G . . END=1706688 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1676 +chrX 1706689 . A C, 1729.04 . AS_QUALapprox=|1739|0;AS_VarDP=0|60|0;DP=62;QUALapprox=1739;RAW_GT_COUNT=0,0,1;RAW_MQandDP=168531,62;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:1739,0,1739:0,0,29,31 +chrX 1706690 . G . . END=1708830 GT:DP:GQ:MIN_DP:PL 0:49:37:42:0,37 +chrX 1708831 . G A, 381.04 . AS_QUALapprox=|391|0;AS_VarDP=22|35|0;BaseQRankSum=-0.497;DP=58;MQRankSum=4.028;QUALapprox=391;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172924,58;ReadPosRankSum=0.648;VarDP=57 GT:AD:DP:GQ:PL:SB 1:22,35,0:57:99:391,0,1106:9,13,19,16 +chrX 1708832 . A . . END=1709011 GT:DP:GQ:MIN_DP:PL 0:40:99:40:0,1101 +chrX 1709012 . G A, 1824.04 . AS_QUALapprox=|1834|0;AS_VarDP=0|41|0;DP=41;QUALapprox=1834;RAW_GT_COUNT=0,0,1;RAW_MQandDP=48715,41;VarDP=41 GT:AD:DP:GQ:PL:SB 1:0,41,0:41:99:1834,0,1834:0,0,23,18 +chrX 1709013 . T . . END=1709017 GT:DP:GQ:MIN_DP:PL 0:41:99:41:0,1350 +chrX 1709018 . G T, 1894.04 . AS_QUALapprox=|1904|0;AS_VarDP=0|43|0;DP=44;QUALapprox=1904;RAW_GT_COUNT=0,0,1;RAW_MQandDP=52309,44;VarDP=43 GT:AD:DP:GQ:PL:SB 1:0,43,0:43:99:1904,0,1904:0,0,25,18 +chrX 1709019 . G . . END=1709892 GT:DP:GQ:MIN_DP:PL 0:63:85:63:0,85 +chrX 1709893 . T G, 135.04 . AS_QUALapprox=|145|0;AS_VarDP=28|34|0;BaseQRankSum=-0.412;DP=64;MQRankSum=0.000;QUALapprox=145;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;ReadPosRankSum=-0.340;VarDP=62 GT:AD:DP:GQ:PL:SB 1:28,34,0:62:99:145,0,1066:15,13,16,18 +chrX 1709894 . G . . END=1710230 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1780 +chrX 1710231 . G . . END=1710231 GT:DP:GQ:MIN_DP:PL 0:68:19:68:0,19 +chrX 1710232 . T . . END=1710314 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1800 +chrX 1710315 . T C, 291.04 . AS_QUALapprox=|301|0;AS_VarDP=25|38|0;BaseQRankSum=-2.052;DP=63;MQRankSum=0.000;QUALapprox=301;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;ReadPosRankSum=0.239;VarDP=63 GT:AD:DP:GQ:PL:SB 1:25,38,0:63:99:301,0,1150:16,9,20,18 +chrX 1710316 . G . . END=1712110 GT:DP:GQ:MIN_DP:PL 0:32:42:26:0,42 +chrX 1712111 . AT A,ATT, 349.01 . AS_QUALapprox=|327|359|0;AS_VarDP=0|16|15|0;DP=32;QUALapprox=359;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=31 GT:AD:DP:GQ:PL:SB 2:0,16,15,0:31:32:359,32,0,531:0,0,18,13 +chrX 1712113 . T . . END=1712184 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,916 +chrX 1712185 . A G, 64.04 . AS_QUALapprox=|74|0;AS_VarDP=16|20|0;BaseQRankSum=-1.388;DP=40;MQRankSum=-0.839;QUALapprox=74;RAW_GT_COUNT=0,0,1;RAW_MQandDP=141844,40;ReadPosRankSum=0.494;VarDP=36 GT:AD:DP:GQ:PL:SB 1:16,20,0:36:74:74,0,600:10,6,15,5 +chrX 1712186 . G . . END=1712580 GT:DP:GQ:MIN_DP:PL 0:42:99:42:0,190 +chrX 1712581 . C CTTCT, 2387.01 . AS_QUALapprox=|2397|0;AS_VarDP=0|55|0;DP=66;QUALapprox=2397;RAW_GT_COUNT=0,0,1;RAW_MQandDP=235521,66;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:2397,0,2398:0,0,24,31 +chrX 1712582 . T . . END=1713007 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1158 +chrX 1713008 . A G, 336.04 . AS_QUALapprox=|346|0;AS_VarDP=26|39|0;BaseQRankSum=-1.466;DP=67;MQRankSum=-0.785;QUALapprox=346;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237701,67;ReadPosRankSum=1.547;VarDP=65 GT:AD:DP:GQ:PL:SB 1:26,39,0:65:99:346,0,1200:15,11,21,18 +chrX 1713009 . T . . END=1713080 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1800 +chrX 1713081 . A C, 221.04 . AS_QUALapprox=|231|0;AS_VarDP=27|36|0;BaseQRankSum=-2.589;DP=65;MQRankSum=-0.834;QUALapprox=231;RAW_GT_COUNT=0,0,1;RAW_MQandDP=233425,65;ReadPosRankSum=-1.098;VarDP=63 GT:AD:DP:GQ:PL:SB 1:27,36,0:63:99:231,0,1169:18,9,22,14 +chrX 1713082 . A . . END=1714583 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,114 +chrX 1714584 . T C, 187.04 . AS_QUALapprox=|197|0;AS_VarDP=16|25|0;BaseQRankSum=-2.312;DP=44;MQRankSum=1.826;QUALapprox=197;RAW_GT_COUNT=0,0,1;RAW_MQandDP=153801,44;ReadPosRankSum=0.937;VarDP=41 GT:AD:DP:GQ:PL:SB 1:16,25,0:41:99:197,0,733:10,6,12,13 +chrX 1714585 . G . . END=1714698 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1319 +chrX 1714699 . T C, 331.04 . AS_QUALapprox=|341|0;AS_VarDP=22|31|0;BaseQRankSum=1.361;DP=55;MQRankSum=1.722;QUALapprox=341;RAW_GT_COUNT=0,0,1;RAW_MQandDP=196850,55;ReadPosRankSum=0.795;VarDP=53 GT:AD:DP:GQ:PL:SB 1:22,31,0:53:99:341,0,914:10,12,12,19 +chrX 1714700 . G . . END=1714751 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1548 +chrX 1714752 . G A, 339.04 . AS_QUALapprox=|349|0;AS_VarDP=26|35|0;BaseQRankSum=1.424;DP=62;MQRankSum=1.193;QUALapprox=349;RAW_GT_COUNT=0,0,1;RAW_MQandDP=222625,62;ReadPosRankSum=0.007;VarDP=61 GT:AD:DP:GQ:PL:SB 1:26,35,0:61:99:349,0,1453:12,14,14,21 +chrX 1714753 . T . . END=1714768 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1800 +chrX 1714769 . AAG A, 120.01 . AS_QUALapprox=|130|0;AS_VarDP=32|35|0;BaseQRankSum=0.993;DP=68;MQRankSum=1.076;QUALapprox=130;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244225,68;ReadPosRankSum=0.376;VarDP=67 GT:AD:DP:GQ:PL:SB 1:32,35,0:67:99:130,0,1534:18,14,19,16 +chrX 1714772 . G . . END=1715090 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,127 +chrX 1715091 . C . . END=1715091 GT:DP:GQ:MIN_DP:PL 0:73:10:73:0,10 +chrX 1715092 . T . . END=1715733 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,759 +chrX 1715734 . A G, 1979.04 . AS_QUALapprox=|1989|0;AS_VarDP=0|61|0;DP=61;QUALapprox=1989;RAW_GT_COUNT=0,0,1;RAW_MQandDP=217729,61;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,61,0:61:99:1989,0,1989:0,0,23,38 +chrX 1715735 . C . . END=1716680 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1471 +chrX 1716681 . A ATCTG, 3129.01 . AS_QUALapprox=|3139|0;AS_VarDP=0|70|0;DP=72;QUALapprox=3139;RAW_GT_COUNT=0,0,1;RAW_MQandDP=257121,72;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,70,0:70:99:3139,0,3139:0,0,42,28 +chrX 1716682 . T . . END=1717352 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,139 +chrX 1717353 . T G, 2135.04 . AS_QUALapprox=|2145|0;AS_VarDP=0|65|0;DP=68;QUALapprox=2145;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,65,0:65:99:2145,0,2145:0,0,42,23 +chrX 1717354 . G . . END=1717904 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1426 +chrX 1717905 . C CT, 113.01 . AS_QUALapprox=|123|0;AS_VarDP=22|32|0;BaseQRankSum=-0.631;DP=69;MQRankSum=-0.620;QUALapprox=123;RAW_GT_COUNT=0,0,1;RAW_MQandDP=243574,69;ReadPosRankSum=0.114;VarDP=54 GT:AD:DP:GQ:PL:SB 1:22,32,0:54:99:123,0,689:11,11,18,14 +chrX 1717906 . T . . END=1717929 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1542 +chrX 1717930 . A C, 2076.04 . AS_QUALapprox=|2086|0;AS_VarDP=0|59|0;DP=60;QUALapprox=2086;RAW_GT_COUNT=0,0,1;RAW_MQandDP=211699,60;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:2086,0,2086:0,0,30,29 +chrX 1717931 . T . . END=1718053 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1749 +chrX 1718054 . T C, 2405.04 . AS_QUALapprox=|2415|0;AS_VarDP=0|63|0;DP=65;QUALapprox=2415;RAW_GT_COUNT=0,0,1;RAW_MQandDP=215158,65;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,63,0:63:99:2415,0,2415:0,0,31,32 +chrX 1718055 . C . . END=1718325 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,144 +chrX 1718326 . T C, 2126.04 . AS_QUALapprox=|2136|0;AS_VarDP=0|71|0;DP=74;QUALapprox=2136;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,71,0:71:99:2136,0,2136:0,0,33,38 +chrX 1718327 . G . . END=1718762 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,635 +chrX 1718763 . G GTA, 1900.01 . AS_QUALapprox=|1910|0;AS_VarDP=0|51|0;DP=58;QUALapprox=1910;RAW_GT_COUNT=0,0,1;RAW_MQandDP=206800,58;VarDP=51 GT:AD:DP:GQ:PL:SB 1:0,51,0:51:99:1910,0,1910:0,0,22,29 +chrX 1718764 . T . . END=1719222 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1509 +chrX 1719223 . C G, 43.04 . AS_QUALapprox=|53|0;AS_VarDP=28|31|0;BaseQRankSum=-1.284;DP=59;MQRankSum=0.000;QUALapprox=53;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;ReadPosRankSum=-1.579;VarDP=59 GT:AD:DP:GQ:PL:SB 1:28,31,0:59:53:53,0,972:15,13,15,16 +chrX 1719224 . T . . END=1719863 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,496 +chrX 1719864 . T . . END=1719864 GT:DP:GQ:MIN_DP:PL 0:49:3:49:0,3 +chrX 1719865 . C . . END=1720104 GT:DP:GQ:MIN_DP:PL 0:36:35:33:0,35 +chrX 1720105 . A G, 49.04 . AS_QUALapprox=|59|0;AS_VarDP=20|23|0;BaseQRankSum=-1.248;DP=48;MQRankSum=-1.301;QUALapprox=59;RAW_GT_COUNT=0,0,1;RAW_MQandDP=171650,48;ReadPosRankSum=-2.546;VarDP=43 GT:AD:DP:GQ:PL:SB 1:20,23,0:43:59:59,0,744:7,13,9,14 +chrX 1720106 . C . . END=1720165 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,1435 +chrX 1720166 . A T, 133.04 . AS_QUALapprox=|143|0;AS_VarDP=25|27|0;BaseQRankSum=1.363;DP=55;MQRankSum=-0.924;QUALapprox=143;RAW_GT_COUNT=0,0,1;RAW_MQandDP=197425,55;ReadPosRankSum=1.182;VarDP=52 GT:AD:DP:GQ:PL:SB 1:25,27,0:52:99:143,0,1215:14,11,14,13 +chrX 1720167 . A C, 133.04 . AS_QUALapprox=|143|0;AS_VarDP=25|27|0;BaseQRankSum=0.897;DP=54;MQRankSum=-0.924;QUALapprox=143;RAW_GT_COUNT=0,0,1;RAW_MQandDP=193825,54;ReadPosRankSum=1.118;VarDP=52 GT:AD:DP:GQ:PL:SB 1:25,27,0:52:99:143,0,1215:14,11,14,13 +chrX 1720168 . T . . END=1720225 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,1563 +chrX 1720226 . ATT A, 76.01 . AS_QUALapprox=|86|0;AS_VarDP=22|24|0;BaseQRankSum=1.767;DP=54;MQRankSum=-1.338;QUALapprox=86;RAW_GT_COUNT=0,0,1;RAW_MQandDP=193361,54;ReadPosRankSum=0.033;VarDP=46 GT:AD:DP:GQ:PL:SB 1:22,24,0:46:86:86,0,849:15,7,15,9 +chrX 1720229 . T . . END=1720635 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,106 +chrX 1720636 . G A, 143.04 . AS_QUALapprox=|153|0;AS_VarDP=21|24|0;BaseQRankSum=2.236;DP=50;MQRankSum=0.000;QUALapprox=153;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;ReadPosRankSum=-0.319;VarDP=45 GT:AD:DP:GQ:PL:SB 1:21,24,0:45:99:153,0,828:12,9,12,12 +chrX 1720637 . A . . END=1720664 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,1573 +chrX 1720665 . G A, 46.04 . AS_QUALapprox=|56|0;AS_VarDP=26|25|0;BaseQRankSum=2.042;DP=58;MQRankSum=0.000;QUALapprox=56;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;ReadPosRankSum=-1.687;VarDP=51 GT:AD:DP:GQ:PL:SB 1:26,25,0:51:56:56,0,834:16,10,15,10 +chrX 1720666 . C . . END=1721036 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1575 +chrX 1721037 . C . . END=1721037 GT:DP:GQ:MIN_DP:PL 0:79:14:79:0,14 +chrX 1721038 . C . . END=1721636 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1657 +chrX 1721637 . G A, 260.04 . AS_QUALapprox=|270|0;AS_VarDP=27|31|0;BaseQRankSum=3.508;DP=59;MQRankSum=-0.899;QUALapprox=270;RAW_GT_COUNT=0,0,1;RAW_MQandDP=211825,59;ReadPosRankSum=1.396;VarDP=58 GT:AD:DP:GQ:PL:SB 1:27,31,0:58:99:270,0,1068:11,16,13,18 +chrX 1721638 . T . . END=1721915 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,458 +chrX 1721916 . C T, 348.04 . AS_QUALapprox=|358|0;AS_VarDP=21|32|0;BaseQRankSum=0.612;DP=54;MQRankSum=-1.648;QUALapprox=358;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190675,54;ReadPosRankSum=1.182;VarDP=53 GT:AD:DP:GQ:PL:SB 1:21,32,0:53:99:358,0,1002:9,12,16,16 +chrX 1721917 . G . . END=1723286 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,165 +chrX 1723287 . G C, 168.04 . AS_QUALapprox=|178|0;AS_VarDP=29|34|0;BaseQRankSum=0.903;DP=64;MQRankSum=0.000;QUALapprox=178;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;ReadPosRankSum=0.000;VarDP=63 GT:AD:DP:GQ:PL:SB 1:29,34,0:63:99:178,0,1126:16,13,21,13 +chrX 1723288 . A . . END=1724099 GT:DP:GQ:MIN_DP:PL 0:57:95:57:0,95 +chrX 1724100 . T TGATA, 2486.01 . AS_QUALapprox=|2496|0;AS_VarDP=0|56|0;DP=56;QUALapprox=2496;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,56,0:56:99:2496,0,2496:0,0,27,29 +chrX 1724101 . G . . END=1724159 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1275 +chrX 1724160 . C T, 327.04 . AS_QUALapprox=|337|0;AS_VarDP=16|26|0;BaseQRankSum=0.138;DP=44;MQRankSum=0.000;QUALapprox=337;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158400,44;ReadPosRankSum=-0.725;VarDP=42 GT:AD:DP:GQ:PL:SB 1:16,26,0:42:99:337,0,858:4,12,16,10 +chrX 1724161 . T . . END=1724684 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1349 +chrX 1724685 . C T, 298.04 . AS_QUALapprox=|308|0;AS_VarDP=16|26|0;BaseQRankSum=-0.819;DP=45;MQRankSum=0.000;QUALapprox=308;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162000,45;ReadPosRankSum=-0.492;VarDP=42 GT:AD:DP:GQ:PL:SB 1:16,26,0:42:99:308,0,844:8,8,12,14 +chrX 1724686 . G . . END=1725048 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1458 +chrX 1725049 . CCTGT C, 343.01 . AS_QUALapprox=|353|0;AS_VarDP=24|32|0;BaseQRankSum=-0.197;DP=60;MQRankSum=0.000;QUALapprox=353;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;ReadPosRankSum=0.663;VarDP=56 GT:AD:DP:GQ:PL:SB 1:24,32,0:56:99:353,0,1433:11,13,18,14 +chrX 1725054 . C . . END=1725844 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1563 +chrX 1725845 . G C, 1709.04 . AS_QUALapprox=|1719|0;AS_VarDP=0|50|0;DP=54;QUALapprox=1719;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,50,0:50:99:1719,0,1719:0,0,22,28 +chrX 1725846 . A . . END=1726017 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1693 +chrX 1726018 . A G, 114.04 . AS_QUALapprox=|124|0;AS_VarDP=25|29|0;BaseQRankSum=0.228;DP=56;MQRankSum=0.000;QUALapprox=124;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;ReadPosRankSum=0.642;VarDP=54 GT:AD:DP:GQ:PL:SB 1:25,29,0:54:99:124,0,933:11,14,11,18 +chrX 1726019 . C . . END=1726032 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1713 +chrX 1726033 . G C, 129.04 . AS_QUALapprox=|139|0;AS_VarDP=24|31|0;BaseQRankSum=-1.418;DP=58;MQRankSum=0.000;QUALapprox=139;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;ReadPosRankSum=0.306;VarDP=55 GT:AD:DP:GQ:PL:SB 1:24,31,0:55:99:139,0,932:10,14,12,19 +chrX 1726034 . C . . END=1726534 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1150 +chrX 1726535 . G C, 1383.04 . AS_QUALapprox=|1393|0;AS_VarDP=0|42|0;DP=45;QUALapprox=1393;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140411,45;VarDP=42 GT:AD:DP:GQ:PL:SB 1:0,42,0:42:99:1393,0,1393:0,0,17,25 +chrX 1726536 . A . . END=1727125 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1370 +chrX 1727126 . C T, 1316.04 . AS_QUALapprox=|1326|0;AS_VarDP=0|40|0;DP=42;QUALapprox=1326;RAW_GT_COUNT=0,0,1;RAW_MQandDP=143070,42;VarDP=40 GT:AD:DP:GQ:PL:SB 1:0,40,0:40:99:1326,0,1326:0,0,24,16 +chrX 1727127 . A . . END=1727518 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1340 +chrX 1727519 . T TA, 1225.01 . AS_QUALapprox=|1235|0;AS_VarDP=0|51|0;DP=66;QUALapprox=1235;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=51 GT:AD:DP:GQ:PL:SB 1:0,51,0:51:99:1235,0,1235:0,0,25,26 +chrX 1727520 . A . . END=1728025 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,657 +chrX 1728026 . A . . END=1728026 GT:DP:GQ:MIN_DP:PL 0:31:1:31:0,1 +chrX 1728027 . C CTTTTT, 709.01 . AS_QUALapprox=|719|0;AS_VarDP=0|19|0;DP=30;QUALapprox=719;RAW_GT_COUNT=0,0,1;RAW_MQandDP=102000,30;VarDP=19 GT:AD:DP:GQ:PL:SB 1:0,19,0:19:99:719,0,720:0,0,8,11 +chrX 1728028 . T . . END=1728057 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,270 +chrX 1728058 . G T, 406.04 . AS_QUALapprox=|416|0;AS_VarDP=8|17|0;BaseQRankSum=0.561;DP=27;MQRankSum=-1.189;QUALapprox=416;RAW_GT_COUNT=0,0,1;RAW_MQandDP=88176,27;ReadPosRankSum=2.084;VarDP=25 GT:AD:DP:GQ:PL:SB 1:8,17,0:25:99:416,0,749:6,2,8,9 +chrX 1728059 . A . . END=1728059 GT:DP:GQ:MIN_DP:PL 0:19:99:19:0,640 +chrX 1728060 . G A, 361.04 . AS_QUALapprox=|371|0;AS_VarDP=8|16|0;BaseQRankSum=1.327;DP=26;MQRankSum=-0.959;QUALapprox=371;RAW_GT_COUNT=0,0,1;RAW_MQandDP=89600,26;ReadPosRankSum=2.009;VarDP=24 GT:AD:DP:GQ:PL:SB 1:8,16,0:24:99:371,0,704:6,2,7,9 +chrX 1728061 . A . . END=1728946 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,372 +chrX 1728947 . G . . END=1728947 GT:DP:GQ:MIN_DP:PL 0:59:0:59:0,0 +chrX 1728948 . T . . END=1729546 GT:DP:GQ:MIN_DP:PL 0:53:24:45:0,24 +chrX 1729547 . GAAAA G, 164.01 . AS_QUALapprox=|174|0;AS_VarDP=23|26|0;BaseQRankSum=1.474;DP=66;MQRankSum=0.000;QUALapprox=174;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;ReadPosRankSum=0.117;VarDP=49 GT:AD:DP:GQ:PL:SB 1:23,26,0:49:99:174,0,1172:9,14,9,17 +chrX 1729552 . A . . END=1730120 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,115 +chrX 1730121 . T . . END=1730121 GT:DP:GQ:MIN_DP:PL 0:62:0:62:0,0 +chrX 1730122 . C . . END=1730678 GT:DP:GQ:MIN_DP:PL 0:62:95:62:0,95 +chrX 1730679 . C G, 134.04 . AS_QUALapprox=|144|0;AS_VarDP=28|31|0;BaseQRankSum=1.502;DP=59;MQRankSum=0.000;QUALapprox=144;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;ReadPosRankSum=-0.478;VarDP=59 GT:AD:DP:GQ:PL:SB 1:28,31,0:59:99:144,0,1032:14,14,14,17 +chrX 1730680 . C . . END=1731024 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1233 +chrX 1731025 . T TA,TAAA, 660.01 . AS_QUALapprox=|484|670|0;AS_VarDP=0|17|23|0;DP=48;QUALapprox=670;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172336,48;VarDP=40 GT:AD:DP:GQ:PL:SB 2:0,17,23,0:40:99:670,186,0,809:0,0,22,18 +chrX 1731026 . A . . END=1731047 GT:DP:GQ:MIN_DP:PL 0:47:99:47:0,1319 +chrX 1731048 . C T, 183.04 . AS_QUALapprox=|193|0;AS_VarDP=24|28|0;BaseQRankSum=2.250;DP=52;MQRankSum=1.119;QUALapprox=193;RAW_GT_COUNT=0,0,1;RAW_MQandDP=185200,52;ReadPosRankSum=0.707;VarDP=52 GT:AD:DP:GQ:PL:SB 1:24,28,0:52:99:193,0,1126:15,9,16,12 +chrX 1731049 . G . . END=1731216 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1513 +chrX 1731217 . T C, 1399.04 . AS_QUALapprox=|1409|0;AS_VarDP=0|43|0;DP=45;QUALapprox=1409;RAW_GT_COUNT=0,0,1;RAW_MQandDP=161425,45;VarDP=43 GT:AD:DP:GQ:PL:SB 1:0,43,0:43:99:1409,0,1409:0,0,22,21 +chrX 1731218 . G . . END=1731278 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,863 +chrX 1731279 . C G, 1032.04 . AS_QUALapprox=|1042|0;AS_VarDP=0|27|0;DP=27;QUALapprox=1042;RAW_GT_COUNT=0,0,1;RAW_MQandDP=95200,27;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:1042,0,1042:0,0,15,12 +chrX 1731280 . A . . END=1731302 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,794 +chrX 1731303 . GAC G, 404.01 . AS_QUALapprox=|414|0;AS_VarDP=8|17|0;BaseQRankSum=1.290;DP=26;MQRankSum=1.543;QUALapprox=414;RAW_GT_COUNT=0,0,1;RAW_MQandDP=91600,26;ReadPosRankSum=0.525;VarDP=25 GT:AD:DP:GQ:PL:SB 1:8,17,0:25:99:414,0,765:4,4,11,6 +chrX 1731306 . A . . END=1731307 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,824 +chrX 1731308 . A T, 404.04 . AS_QUALapprox=|414|0;AS_VarDP=8|17|0;BaseQRankSum=-0.495;DP=25;MQRankSum=1.543;QUALapprox=414;RAW_GT_COUNT=0,0,1;RAW_MQandDP=88000,25;ReadPosRankSum=-0.211;VarDP=25 GT:AD:DP:GQ:PL:SB 1:8,17,0:25:99:414,0,765:4,4,11,6 +chrX 1731309 . G . . END=1731309 GT:DP:GQ:MIN_DP:PL 0:22:99:22:0,716 +chrX 1731310 . CA C, 485.01 . AS_QUALapprox=|495|0;AS_VarDP=6|17|0;BaseQRankSum=0.000;DP=23;MQRankSum=0.000;QUALapprox=495;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;ReadPosRankSum=-0.589;VarDP=23 GT:AD:DP:GQ:PL:SB 1:6,17,0:23:99:495,0,765:3,3,11,6 +chrX 1731312 . A T, 530.04 . AS_QUALapprox=|540|0;AS_VarDP=5|17|0;BaseQRankSum=-0.707;DP=22;MQRankSum=0.000;QUALapprox=540;RAW_GT_COUNT=0,0,1;RAW_MQandDP=79200,22;ReadPosRankSum=-0.275;VarDP=22 GT:AD:DP:GQ:PL:SB 1:5,17,0:22:99:540,0,765:3,2,11,6 +chrX 1731313 . G . . END=1731322 GT:DP:GQ:MIN_DP:PL 0:22:99:22:0,360 +chrX 1731323 . CAAAAAAAAAA C, 291.01 . AS_QUALapprox=|301|0;AS_VarDP=14|17|0;BaseQRankSum=0.000;DP=40;MQRankSum=1.167;QUALapprox=301;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140000,40;ReadPosRankSum=0.166;VarDP=31 GT:AD:DP:GQ:PL:SB 1:14,17,0:31:99:301,0,767:3,11,11,6 +chrX 1731334 . A . . END=1731359 GT:DP:GQ:MIN_DP:PL 0:38:99:38:0,855 +chrX 1731360 . G T, 515.04 . AS_QUALapprox=|525|0;AS_VarDP=20|33|0;BaseQRankSum=-1.373;DP=54;MQRankSum=1.323;QUALapprox=525;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190400,54;ReadPosRankSum=1.186;VarDP=53 GT:AD:DP:GQ:PL:SB 1:20,33,0:53:99:525,0,1213:9,11,12,21 +chrX 1731361 . G . . END=1731616 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1726 +chrX 1731617 . A G, 1740.04 . AS_QUALapprox=|1750|0;AS_VarDP=0|55|0;DP=58;QUALapprox=1750;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:1750,0,1750:0,0,22,33 +chrX 1731618 . C . . END=1732193 GT:DP:GQ:MIN_DP:PL 0:57:45:48:0,45 +chrX 1732194 . CTTT C, 222.01 . AS_QUALapprox=|232|0;AS_VarDP=6|10|0;BaseQRankSum=-1.228;DP=37;MQRankSum=1.980;QUALapprox=232;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126625,37;ReadPosRankSum=-1.231;VarDP=16 GT:AD:DP:GQ:PL:SB 1:6,10,0:16:99:232,0,367:6,0,1,9 +chrX 1732198 . T . . END=1732267 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,495 +chrX 1732268 . G A, 1345.04 . AS_QUALapprox=|1355|0;AS_VarDP=0|42|0;DP=44;QUALapprox=1355;RAW_GT_COUNT=0,0,1;RAW_MQandDP=155009,44;VarDP=42 GT:AD:DP:GQ:PL:SB 1:0,42,0:42:99:1355,0,1355:0,0,13,29 +chrX 1732269 . G . . END=1733285 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,129 +chrX 1733286 . AG A, 1632.01 . AS_QUALapprox=|1642|0;AS_VarDP=0|46|0;DP=47;QUALapprox=1642;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;VarDP=46 GT:AD:DP:GQ:PL:SB 1:0,46,0:46:99:1642,0,1642:0,0,34,12 +chrX 1733288 . G . . END=1733500 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,1393 +chrX 1733501 . C CAAA,CAAAA, 174.01 . AS_QUALapprox=|0|184|0;AS_VarDP=22|1|23|0;BaseQRankSum=-0.118;DP=61;MQRankSum=0.000;QUALapprox=184;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;ReadPosRankSum=-1.057;VarDP=46 GT:AD:DP:GQ:PL:SB 2:22,1,23,0:46:99:184,480,0,834:11,11,10,14 +chrX 1733502 . A . . END=1734520 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,164 +chrX 1734521 . G A, 2000.04 . AS_QUALapprox=|2010|0;AS_VarDP=0|61|0;DP=63;QUALapprox=2010;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,61,0:61:99:2010,0,2010:0,0,29,32 +chrX 1734522 . G . . END=1734729 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1546 +chrX 1734730 . G A, 1021.04 . AS_QUALapprox=|1031|0;AS_VarDP=22|44|0;BaseQRankSum=-0.254;DP=67;MQRankSum=0.000;QUALapprox=1031;RAW_GT_COUNT=0,0,1;RAW_MQandDP=240964,67;ReadPosRankSum=1.109;VarDP=66 GT:AD:DP:GQ:PL:SB 1:22,44,0:66:99:1031,0,1979:12,10,24,20 +chrX 1734731 . C A, 1021.04 . AS_QUALapprox=|1031|0;AS_VarDP=22|44|0;BaseQRankSum=-0.161;DP=67;MQRankSum=0.000;QUALapprox=1031;RAW_GT_COUNT=0,0,1;RAW_MQandDP=240964,67;ReadPosRankSum=1.456;VarDP=66 GT:AD:DP:GQ:PL:SB 1:22,44,0:66:99:1031,0,1979:12,10,24,20 +chrX 1734732 . C . . END=1735080 GT:DP:GQ:MIN_DP:PL 0:62:44:62:0,44 +chrX 1735081 . T . . END=1735084 GT:DP:GQ:MIN_DP:PL 0:31:0:31:0,0 +chrX 1735085 . C . . END=1735117 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,495 +chrX 1735118 . T C, 768.04 . AS_QUALapprox=|778|0;AS_VarDP=0|20|0;DP=30;QUALapprox=778;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:778,0,778:0,0,5,15 +chrX 1735119 . T . . END=1735224 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,393 +chrX 1735225 . A . . END=1735225 GT:DP:GQ:MIN_DP:PL 0:18:0:18:0,0 +chrX 1735226 . T . . END=1735254 GT:DP:GQ:MIN_DP:PL 0:17:99:17:0,225 +chrX 1735255 . C . . END=1735255 GT:DP:GQ:MIN_DP:PL 0:13:0:13:0,0 +chrX 1735256 . C . . END=1735259 GT:DP:GQ:MIN_DP:PL 0:14:99:14:0,135 +chrX 1735260 . C . . END=1735265 GT:DP:GQ:MIN_DP:PL 0:13:0:13:0,0 +chrX 1735266 . C . . END=1735271 GT:DP:GQ:MIN_DP:PL 0:13:45:13:0,45 +chrX 1735272 . C . . END=1735272 GT:DP:GQ:MIN_DP:PL 0:10:0:10:0,0 +chrX 1735273 . T . . END=1735276 GT:DP:GQ:MIN_DP:PL 0:11:45:11:0,45 +chrX 1735277 . C . . END=1735279 GT:DP:GQ:MIN_DP:PL 0:10:0:10:0,0 +chrX 1735280 . C . . END=1735284 GT:DP:GQ:MIN_DP:PL 0:8:20:7:0,20 +chrX 1735285 . C . . END=1735285 GT:DP:GQ:MIN_DP:PL 0:7:0:7:0,0 +chrX 1735286 . C . . END=1735296 GT:DP:GQ:MIN_DP:PL 0:6:45:6:0,45 +chrX 1735297 . T . . END=1735297 GT:DP:GQ:MIN_DP:PL 0:6:0:6:0,0 +chrX 1735298 . C . . END=1735299 GT:DP:GQ:MIN_DP:PL 0:6:90:6:0,90 +chrX 1735300 . T . . END=1735300 GT:DP:GQ:MIN_DP:PL 0:6:0:6:0,0 +chrX 1735301 . C . . END=1735304 GT:DP:GQ:MIN_DP:PL 0:6:90:6:0,90 +chrX 1735305 . T . . END=1735305 GT:DP:GQ:MIN_DP:PL 0:5:0:5:0,0 +chrX 1735306 . T . . END=1735310 GT:DP:GQ:MIN_DP:PL 0:4:80:4:0,80 +chrX 1735311 . T . . END=1735311 GT:DP:GQ:MIN_DP:PL 0:3:0:3:0,0 +chrX 1735312 . T . . END=1735415 GT:DP:GQ:MIN_DP:PL 0:4:35:1:0,35 +chrX 1735416 . T TCTCCCTCCTCTC, 182.01 . AS_QUALapprox=|192|0;AS_VarDP=4|9|0;BaseQRankSum=-0.191;DP=23;MQRankSum=0.000;QUALapprox=192;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;ReadPosRankSum=-0.075;VarDP=13 GT:AD:DP:GQ:PL:SB 1:4,9,0:13:99:192,0,360:3,1,6,3 +chrX 1735417 . C . . END=1735461 GT:DP:GQ:MIN_DP:PL 0:13:99:13:0,277 +chrX 1735462 . T TCTCCTCCTTCTCC, 499.01 . AS_QUALapprox=|509|0;AS_VarDP=0|12|0;DP=22;QUALapprox=509;RAW_GT_COUNT=0,0,1;RAW_MQandDP=76500,22;VarDP=12 GT:AD:DP:GQ:PL:SB 1:0,12,0:12:99:509,0,509:0,0,8,4 +chrX 1735463 . C . . END=1735536 GT:DP:GQ:MIN_DP:PL 0:11:99:11:0,228 +chrX 1735537 . CCT C, 80.01 . AS_QUALapprox=|90|0;AS_VarDP=3|5|0;BaseQRankSum=0.000;DP=13;MQRankSum=0.000;QUALapprox=90;RAW_GT_COUNT=0,0,1;RAW_MQandDP=42025,13;ReadPosRankSum=0.157;VarDP=8 GT:AD:DP:GQ:PL:SB 1:3,5,0:8:90:90,0,225:0,3,3,2 +chrX 1735540 . C . . END=1735556 GT:DP:GQ:MIN_DP:PL 0:8:99:8:0,237 +chrX 1735557 . G A, 80.04 . AS_QUALapprox=|90|0;AS_VarDP=3|5|0;BaseQRankSum=2.189;DP=14;MQRankSum=0.000;QUALapprox=90;RAW_GT_COUNT=0,0,1;RAW_MQandDP=47200,14;ReadPosRankSum=-1.368;VarDP=8 GT:AD:DP:GQ:PL:SB 1:3,5,0:8:90:90,0,225:0,3,3,2 +chrX 1735558 . T . . END=1735676 GT:DP:GQ:MIN_DP:PL 0:10:39:6:0,39 +chrX 1735677 . C CTCCT, 485.01 . AS_QUALapprox=|495|0;AS_VarDP=0|11|0;DP=17;QUALapprox=495;RAW_GT_COUNT=0,0,1;RAW_MQandDP=56410,17;VarDP=11 GT:AD:DP:GQ:PL:SB 1:0,11,0:11:99:495,0,495:0,0,3,8 +chrX 1735678 . C . . END=1735698 GT:DP:GQ:MIN_DP:PL 0:17:99:17:0,303 +chrX 1735699 . C . . END=1735699 GT:DP:GQ:MIN_DP:PL 0:25:9:25:0,9 +chrX 1735700 . T . . END=1735833 GT:DP:GQ:MIN_DP:PL 0:25:90:25:0,90 +chrX 1735834 . G . . END=1735834 GT:DP:GQ:MIN_DP:PL 0:19:0:19:0,0 +chrX 1735835 . C . . END=1735849 GT:DP:GQ:MIN_DP:PL 0:18:99:18:0,360 +chrX 1735850 . G . . END=1735850 GT:DP:GQ:MIN_DP:PL 0:10:0:10:0,0 +chrX 1735851 . C . . END=1735865 GT:DP:GQ:MIN_DP:PL 0:11:99:11:0,194 +chrX 1735866 . G . . END=1735866 GT:DP:GQ:MIN_DP:PL 0:6:0:6:0,0 +chrX 1735867 . C . . END=1735897 GT:DP:GQ:MIN_DP:PL 0:5:35:4:0,35 +chrX 1735898 . G . . END=1735898 GT:DP:GQ:MIN_DP:PL 0:4:0:4:0,0 +chrX 1735899 . C . . END=1736119 GT:DP:GQ:MIN_DP:PL 0:42:54:42:0,54 +chrX 1736120 . A G, 1573.04 . AS_QUALapprox=|1583|0;AS_VarDP=0|48|0;DP=53;QUALapprox=1583;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=48 GT:AD:DP:GQ:PL:SB 1:0,48,0:48:99:1583,0,1583:0,0,29,19 +chrX 1736121 . G . . END=1736704 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,124 +chrX 1736705 . A G, 107.04 . AS_QUALapprox=|117|0;AS_VarDP=19|27|0;BaseQRankSum=-3.492;DP=49;MQRankSum=-1.168;QUALapprox=117;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172931,49;ReadPosRankSum=-2.143;VarDP=46 GT:AD:DP:GQ:PL:SB 1:19,27,0:46:99:117,0,778:11,8,20,7 +chrX 1736706 . C . . END=1736841 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1578 +chrX 1736842 . G A, 15.04 . AS_QUALapprox=|25|0;AS_VarDP=27|27|0;BaseQRankSum=1.446;DP=54;MQRankSum=-1.732;QUALapprox=25;RAW_GT_COUNT=0,0,1;RAW_MQandDP=175264,54;ReadPosRankSum=-0.251;VarDP=54 GT:AD:DP:GQ:PL:SB 1:27,27,0:54:25:25,0,903:14,13,12,15 +chrX 1736843 . A . . END=1736931 GT:DP:GQ:MIN_DP:PL 0:53:45:53:0,45 +chrX 1736932 . T . . END=1736932 GT:DP:GQ:MIN_DP:PL 0:55:0:55:0,0 +chrX 1736933 . G . . END=1736991 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1528 +chrX 1736992 . A G, 1708.04 . AS_QUALapprox=|1718|0;AS_VarDP=0|55|0;DP=57;QUALapprox=1718;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158983,57;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:1718,0,1718:0,0,25,30 +chrX 1736993 . G . . END=1737045 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1617 +chrX 1737046 . T C, 122.04 . AS_QUALapprox=|132|0;AS_VarDP=23|29|0;BaseQRankSum=-1.516;DP=52;MQRankSum=-3.054;QUALapprox=132;RAW_GT_COUNT=0,0,1;RAW_MQandDP=167081,52;ReadPosRankSum=0.120;VarDP=52 GT:AD:DP:GQ:PL:SB 1:23,29,0:52:99:132,0,876:9,14,11,18 +chrX 1737047 . G . . END=1737079 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,1507 +chrX 1737080 . A AG, 151.01 . AS_QUALapprox=|161|0;AS_VarDP=21|25|0;BaseQRankSum=1.488;DP=47;MQRankSum=0.000;QUALapprox=161;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;ReadPosRankSum=0.508;VarDP=46 GT:AD:DP:GQ:PL:SB 1:21,25,0:46:99:161,0,994:8,13,11,14 +chrX 1737081 . T . . END=1737176 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1615 +chrX 1737177 . C T, 119.04 . AS_QUALapprox=|129|0;AS_VarDP=28|32|0;BaseQRankSum=-0.077;DP=61;MQRankSum=0.000;QUALapprox=129;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;ReadPosRankSum=-0.578;VarDP=60 GT:AD:DP:GQ:PL:SB 1:28,32,0:60:99:129,0,1052:12,16,19,13 +chrX 1737178 . T . . END=1737251 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,1517 +chrX 1737252 . A G, 218.04 . AS_QUALapprox=|228|0;AS_VarDP=20|29|0;BaseQRankSum=-1.437;DP=52;MQRankSum=0.000;QUALapprox=228;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;ReadPosRankSum=0.865;VarDP=49 GT:AD:DP:GQ:PL:SB 1:20,29,0:49:99:228,0,877:11,9,19,10 +chrX 1737253 . T . . END=1737289 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,1563 +chrX 1737290 . G T, 460.04 . AS_QUALapprox=|470|0;AS_VarDP=18|34|0;BaseQRankSum=-1.288;DP=56;MQRankSum=0.000;QUALapprox=470;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;ReadPosRankSum=-2.030;VarDP=52 GT:AD:DP:GQ:PL:SB 1:18,34,0:52:99:470,0,1075:11,7,19,15 +chrX 1737291 . C . . END=1737448 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,273 +chrX 1737449 . T . . END=1737450 GT:DP:GQ:MIN_DP:PL 0:47:0:47:0,0 +chrX 1737451 . T . . END=1737497 GT:DP:GQ:MIN_DP:PL 0:44:99:44:0,540 +chrX 1737498 . T C, 378.04 . AS_QUALapprox=|388|0;AS_VarDP=12|24|0;BaseQRankSum=-0.644;DP=39;MQRankSum=0.000;QUALapprox=388;RAW_GT_COUNT=0,0,1;RAW_MQandDP=139300,39;ReadPosRankSum=0.000;VarDP=36 GT:AD:DP:GQ:PL:SB 1:12,24,0:36:99:388,0,794:4,8,15,9 +chrX 1737499 . C . . END=1737537 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,1087 +chrX 1737538 . T C, 1823.04 . AS_QUALapprox=|1833|0;AS_VarDP=0|41|0;DP=44;QUALapprox=1833;RAW_GT_COUNT=0,0,1;RAW_MQandDP=157300,44;VarDP=41 GT:AD:DP:GQ:PL:SB 1:0,41,0:41:99:1833,0,1833:0,0,22,19 +chrX 1737539 . G . . END=1737547 GT:DP:GQ:MIN_DP:PL 0:41:99:41:0,1266 +chrX 1737548 . T C, 1904.04 . AS_QUALapprox=|1914|0;AS_VarDP=0|44|0;DP=46;QUALapprox=1914;RAW_GT_COUNT=0,0,1;RAW_MQandDP=164500,46;VarDP=44 GT:AD:DP:GQ:PL:SB 1:0,44,0:44:99:1914,0,1914:0,0,23,21 +chrX 1737549 . C . . END=1738162 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,481 +chrX 1738163 . T C, 65.04 . AS_QUALapprox=|75|0;AS_VarDP=27|28|0;BaseQRankSum=1.222;DP=58;MQRankSum=1.055;QUALapprox=75;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208225,58;ReadPosRankSum=-0.244;VarDP=55 GT:AD:DP:GQ:PL:SB 1:27,28,0:55:75:75,0,897:16,11,18,10 +chrX 1738164 . G . . END=1738252 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1215 +chrX 1738253 . C A, 2378.04 . AS_QUALapprox=|2388|0;AS_VarDP=0|71|0;DP=74;QUALapprox=2388;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,71,0:71:99:2388,0,2388:0,0,42,29 +chrX 1738254 . A . . END=1738375 GT:DP:GQ:MIN_DP:PL 0:76:99:76:0,1800 +chrX 1738376 . T A, 2306.04 . AS_QUALapprox=|2316|0;AS_VarDP=0|73|0;DP=76;QUALapprox=2316;RAW_GT_COUNT=0,0,1;RAW_MQandDP=273600,76;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,73,0:73:99:2316,0,2316:0,0,38,35 +chrX 1738377 . T . . END=1738486 GT:DP:GQ:MIN_DP:PL 0:73:99:73:0,1800 +chrX 1738487 . A G, 2273.04 . AS_QUALapprox=|2283|0;AS_VarDP=0|69|0;DP=72;QUALapprox=2283;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,69,0:69:99:2283,0,2283:0,0,27,42 +chrX 1738488 . G . . END=1739039 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,160 +chrX 1739040 . C T, 290.04 . AS_QUALapprox=|300|0;AS_VarDP=26|34|0;BaseQRankSum=1.159;DP=60;MQRankSum=0.000;QUALapprox=300;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;ReadPosRankSum=0.403;VarDP=60 GT:AD:DP:GQ:PL:SB 1:26,34,0:60:99:300,0,1117:14,12,15,19 +chrX 1739041 . G . . END=1739200 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1765 +chrX 1739201 . A G, 1974.04 . AS_QUALapprox=|1984|0;AS_VarDP=0|61|0;DP=65;QUALapprox=1984;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226386,65;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,61,0:61:99:1984,0,1984:0,0,26,35 +chrX 1739202 . T . . END=1739247 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,990 +chrX 1739248 . TG T, 63.01 . AS_QUALapprox=|73|0;AS_VarDP=26|29|0;BaseQRankSum=0.179;DP=58;MQRankSum=1.093;QUALapprox=73;RAW_GT_COUNT=0,0,1;RAW_MQandDP=203825,58;ReadPosRankSum=0.698;VarDP=55 GT:AD:DP:GQ:PL:SB 1:26,29,0:55:73:73,0,1190:15,11,11,18 +chrX 1739250 . T . . END=1739263 GT:DP:GQ:MIN_DP:PL 0:61:2:61:0,2 +chrX 1739264 . T . . END=1739803 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,539 +chrX 1739804 . A G, 897.04 . AS_QUALapprox=|907|0;AS_VarDP=0|31|0;DP=31;QUALapprox=907;RAW_GT_COUNT=0,0,1;RAW_MQandDP=110025,31;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:907,0,907:0,0,19,12 +chrX 1739805 . A . . END=1739900 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,749 +chrX 1739901 . TTGTGTG T, 739.01 . AS_QUALapprox=|749|0;AS_VarDP=2|19|0;BaseQRankSum=-0.162;DP=29;MQRankSum=-0.353;QUALapprox=749;RAW_GT_COUNT=0,0,1;RAW_MQandDP=95630,29;ReadPosRankSum=-1.621;VarDP=21 GT:AD:DP:GQ:PL:SB 1:2,19,0:21:99:749,0,798:2,0,9,10 +chrX 1739908 . T . . END=1740232 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,297 +chrX 1740233 . T TTG, 71.01 . AS_QUALapprox=|81|0;AS_VarDP=21|23|0;BaseQRankSum=0.598;DP=56;MQRankSum=-0.910;QUALapprox=81;RAW_GT_COUNT=0,0,1;RAW_MQandDP=196593,56;ReadPosRankSum=1.140;VarDP=44 GT:AD:DP:GQ:PL:SB 1:21,23,0:44:81:81,0,813:14,7,11,12 +chrX 1740234 . T . . END=1741476 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,386 +chrX 1741477 . A G, 326.04 . AS_QUALapprox=|336|0;AS_VarDP=24|36|0;BaseQRankSum=-1.818;DP=62;MQRankSum=0.000;QUALapprox=336;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;ReadPosRankSum=0.204;VarDP=60 GT:AD:DP:GQ:PL:SB 1:24,36,0:60:99:336,0,1150:14,10,23,13 +chrX 1741478 . C . . END=1741978 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,154 +chrX 1741979 . A G, 62.04 . AS_QUALapprox=|72|0;AS_VarDP=27|29|0;BaseQRankSum=0.515;DP=57;MQRankSum=0.000;QUALapprox=72;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;ReadPosRankSum=-1.870;VarDP=56 GT:AD:DP:GQ:PL:SB 1:27,29,0:56:72:72,0,971:11,16,16,13 +chrX 1741980 . T . . END=1742180 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1736 +chrX 1742181 . G A, 224.04 . AS_QUALapprox=|234|0;AS_VarDP=32|37|0;BaseQRankSum=2.130;DP=70;MQRankSum=0.000;QUALapprox=234;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;ReadPosRankSum=-0.349;VarDP=69 GT:AD:DP:GQ:PL:SB 1:32,37,0:69:99:234,0,1241:22,10,25,12 +chrX 1742182 . T . . END=1742414 GT:DP:GQ:MIN_DP:PL 0:74:99:74:0,423 +chrX 1742415 . G A, 244.04 . AS_QUALapprox=|254|0;AS_VarDP=33|40|0;BaseQRankSum=0.671;DP=76;MQRankSum=0.000;QUALapprox=254;RAW_GT_COUNT=0,0,1;RAW_MQandDP=273600,76;ReadPosRankSum=-0.865;VarDP=73 GT:AD:DP:GQ:PL:SB 1:33,40,0:73:99:254,0,1350:17,16,17,23 +chrX 1742416 . C . . END=1742507 GT:DP:GQ:MIN_DP:PL 0:76:99:76:0,1800 +chrX 1742508 . T C, 2231.04 . AS_QUALapprox=|2241|0;AS_VarDP=0|66|0;DP=69;QUALapprox=2241;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244284,69;VarDP=66 GT:AD:DP:GQ:PL:SB 1:0,66,0:66:99:2241,0,2241:0,0,26,40 +chrX 1742509 . T . . END=1742691 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,204 +chrX 1742692 . G GA, 1249.01 . AS_QUALapprox=|1259|0;AS_VarDP=0|49|0;DP=58;QUALapprox=1259;RAW_GT_COUNT=0,0,1;RAW_MQandDP=207650,58;VarDP=49 GT:AD:DP:GQ:PL:SB 1:0,49,0:49:99:1259,0,1259:0,0,21,28 +chrX 1742693 . A . . END=1743022 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1667 +chrX 1743023 . A G,T, 2271.04 . AS_QUALapprox=|2022|2281|0;AS_VarDP=0|33|38|0;DP=75;QUALapprox=2281;RAW_GT_COUNT=0,0,1;RAW_MQandDP=270000,75;VarDP=71 GT:AD:DP:GQ:PL:SB 2:0,33,38,0:71:99:2281,259,0,1750:0,0,34,37 +chrX 1743024 . G . . END=1743024 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1800 +chrX 1743025 . C G, 3232.04 . AS_QUALapprox=|3242|0;AS_VarDP=0|74|0;DP=75;QUALapprox=3242;RAW_GT_COUNT=0,0,1;RAW_MQandDP=270000,75;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,74,0:74:99:3242,0,3242:0,0,36,38 +chrX 1743026 . A . . END=1743239 GT:DP:GQ:MIN_DP:PL 0:75:99:75:0,1800 +chrX 1743240 . G A, 66.04 . AS_QUALapprox=|76|0;AS_VarDP=35|36|0;BaseQRankSum=1.200;DP=74;MQRankSum=0.000;QUALapprox=76;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;ReadPosRankSum=1.110;VarDP=71 GT:AD:DP:GQ:PL:SB 1:35,36,0:71:76:76,0,1191:24,11,22,14 +chrX 1743241 . T . . END=1743504 GT:DP:GQ:MIN_DP:PL 0:73:99:73:0,1800 +chrX 1743505 . C A, 45.04 . AS_QUALapprox=|55|0;AS_VarDP=29|29|0;BaseQRankSum=1.424;DP=59;MQRankSum=0.000;QUALapprox=55;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;ReadPosRankSum=0.047;VarDP=58 GT:AD:DP:GQ:PL:SB 1:29,29,0:58:55:55,0,978:16,13,11,18 +chrX 1743506 . G . . END=1743797 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,1270 +chrX 1743798 . CT C, 0 . AS_QUALapprox=|1|0;AS_VarDP=31|31|0;BaseQRankSum=0.714;DP=63;MQRankSum=0.000;QUALapprox=1;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;ReadPosRankSum=1.014;VarDP=62 GT:AD:DP:GQ:PL:SB 1:31,31,0:62:1:1,0,1254:16,15,20,11 +chrX 1743800 . G . . END=1743988 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1607 +chrX 1743989 . ATT A, 161.01 . AS_QUALapprox=|171|0;AS_VarDP=20|25|0;BaseQRankSum=0.293;DP=52;MQRankSum=1.163;QUALapprox=171;RAW_GT_COUNT=0,0,1;RAW_MQandDP=185200,52;ReadPosRankSum=-0.023;VarDP=45 GT:AD:DP:GQ:PL:SB 1:20,25,0:45:99:171,0,894:9,11,15,10 +chrX 1743992 . T . . END=1744033 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,1544 +chrX 1744034 . G A, 155.04 . AS_QUALapprox=|165|0;AS_VarDP=24|28|0;BaseQRankSum=0.685;DP=54;MQRankSum=0.000;QUALapprox=165;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;ReadPosRankSum=1.515;VarDP=52 GT:AD:DP:GQ:PL:SB 1:24,28,0:52:99:165,0,933:12,12,15,13 +chrX 1744035 . T . . END=1744088 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,1488 +chrX 1744089 . C T, 297.04 . AS_QUALapprox=|307|0;AS_VarDP=18|28|0;BaseQRankSum=0.348;DP=49;MQRankSum=0.000;QUALapprox=307;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;ReadPosRankSum=-0.687;VarDP=46 GT:AD:DP:GQ:PL:SB 1:18,28,0:46:99:307,0,882:7,11,13,15 +chrX 1744090 . G . . END=1744125 GT:DP:GQ:MIN_DP:PL 0:42:99:42:0,1211 +chrX 1744126 . T C, 1261.04 . AS_QUALapprox=|1271|0;AS_VarDP=0|39|0;DP=39;QUALapprox=1271;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140400,39;VarDP=39 GT:AD:DP:GQ:PL:SB 1:0,39,0:39:99:1271,0,1271:0,0,16,23 +chrX 1744127 . G . . END=1744212 GT:DP:GQ:MIN_DP:PL 0:47:99:47:0,1236 +chrX 1744213 . C T, 49.04 . AS_QUALapprox=|59|0;AS_VarDP=24|24|0;BaseQRankSum=1.295;DP=49;MQRankSum=0.000;QUALapprox=59;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;ReadPosRankSum=-0.206;VarDP=48 GT:AD:DP:GQ:PL:SB 1:24,24,0:48:59:59,0,813:9,15,15,9 +chrX 1744214 . C . . END=1745220 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,626 +chrX 1745221 . T C, 385.04 . AS_QUALapprox=|395|0;AS_VarDP=26|39|0;BaseQRankSum=-0.547;DP=68;MQRankSum=0.000;QUALapprox=395;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;ReadPosRankSum=-0.516;VarDP=65 GT:AD:DP:GQ:PL:SB 1:26,39,0:65:99:395,0,1259:14,12,22,17 +chrX 1745222 . G . . END=1747323 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,155 +chrX 1747324 . A G, 1816.04 . AS_QUALapprox=|1826|0;AS_VarDP=0|56|0;DP=58;QUALapprox=1826;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,56,0:56:99:1826,0,1826:0,0,26,30 +chrX 1747325 . A . . END=1747488 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1657 +chrX 1747489 . T TTG, 177.01 . AS_QUALapprox=|187|0;AS_VarDP=24|34|0;BaseQRankSum=-0.115;DP=62;MQRankSum=-0.805;QUALapprox=187;RAW_GT_COUNT=0,0,1;RAW_MQandDP=221200,62;ReadPosRankSum=-0.466;VarDP=58 GT:AD:DP:GQ:PL:SB 1:24,34,0:58:99:187,0,1142:7,17,16,18 +chrX 1747490 . C . . END=1748038 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,233 +chrX 1748039 . C T, 57.04 . AS_QUALapprox=|67|0;AS_VarDP=25|26|0;BaseQRankSum=0.881;DP=53;MQRankSum=0.000;QUALapprox=67;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;ReadPosRankSum=0.726;VarDP=51 GT:AD:DP:GQ:PL:SB 1:25,26,0:51:67:67,0,870:16,9,14,12 +chrX 1748040 . T . . END=1749569 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,208 +chrX 1749570 . G A, 1826.04 . AS_QUALapprox=|1836|0;AS_VarDP=0|56|0;DP=59;QUALapprox=1836;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,56,0:56:99:1836,0,1836:0,0,29,27 +chrX 1749571 . A . . END=1749802 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1622 +chrX 1749803 . C T, 186.04 . AS_QUALapprox=|196|0;AS_VarDP=33|38|0;BaseQRankSum=0.876;DP=72;MQRankSum=0.000;QUALapprox=196;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;ReadPosRankSum=0.969;VarDP=71 GT:AD:DP:GQ:PL:SB 1:33,38,0:71:99:196,0,1245:19,14,19,19 +chrX 1749804 . A . . END=1750445 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1553 +chrX 1750446 . C A, 646.04 . AS_QUALapprox=|656|0;AS_VarDP=26|45|0;BaseQRankSum=0.468;DP=73;MQRankSum=0.000;QUALapprox=656;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;ReadPosRankSum=1.439;VarDP=71 GT:AD:DP:GQ:PL:SB 1:26,45,0:71:99:656,0,1494:10,16,23,22 +chrX 1750447 . C . . END=1751785 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,625 +chrX 1751786 . A C, 1251.04 . AS_QUALapprox=|1261|0;AS_VarDP=1|39|0;BaseQRankSum=2.564;DP=43;MQRankSum=0.000;QUALapprox=1261;RAW_GT_COUNT=0,0,1;RAW_MQandDP=152800,43;ReadPosRankSum=-0.867;VarDP=40 GT:AD:DP:GQ:PL:SB 1:1,39,0:40:99:1261,0,1285:0,1,22,17 +chrX 1751787 . A . . END=1753500 GT:DP:GQ:MIN_DP:PL 0:63:71:63:0,71 +chrX 1753501 . C . . END=1753501 GT:DP:GQ:MIN_DP:PL 0:74:0:74:0,0 +chrX 1753502 . A . . END=1753612 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1800 +chrX 1753613 . A G, 14.03 . AS_QUALapprox=|24|0;AS_VarDP=30|32|0;BaseQRankSum=-0.991;DP=62;MQRankSum=0.000;QUALapprox=24;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;ReadPosRankSum=-0.648;VarDP=62 GT:AD:DP:GQ:PL:SB 1:30,32,0:62:24:24,0,1037:14,16,15,17 +chrX 1753614 . T . . END=1753790 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1420 +chrX 1753791 . A G, 149.04 . AS_QUALapprox=|159|0;AS_VarDP=25|29|0;BaseQRankSum=1.564;DP=55;MQRankSum=0.000;QUALapprox=159;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;ReadPosRankSum=-0.312;VarDP=54 GT:AD:DP:GQ:PL:SB 1:25,29,0:54:99:159,0,1008:13,12,10,19 +chrX 1753792 . G . . END=1753974 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1773 +chrX 1753975 . C T, 70.04 . AS_QUALapprox=|80|0;AS_VarDP=30|32|0;BaseQRankSum=0.456;DP=62;MQRankSum=0.000;QUALapprox=80;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;ReadPosRankSum=-0.775;VarDP=62 GT:AD:DP:GQ:PL:SB 1:30,32,0:62:80:80,0,1047:19,11,19,13 +chrX 1753976 . T . . END=1754183 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1800 +chrX 1754184 . T C, 84.04 . AS_QUALapprox=|94|0;AS_VarDP=28|33|0;BaseQRankSum=-2.460;DP=61;MQRankSum=0.000;QUALapprox=94;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;ReadPosRankSum=-0.557;VarDP=61 GT:AD:DP:GQ:PL:SB 1:28,33,0:61:94:94,0,1057:15,13,15,18 +chrX 1754185 . A . . END=1754281 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1692 +chrX 1754282 . G A, 189.04 . AS_QUALapprox=|199|0;AS_VarDP=22|28|0;BaseQRankSum=-0.169;DP=51;MQRankSum=0.000;QUALapprox=199;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;ReadPosRankSum=-0.489;VarDP=50 GT:AD:DP:GQ:PL:SB 1:22,28,0:50:99:199,0,943:9,13,12,16 +chrX 1754283 . C . . END=1754556 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1641 +chrX 1754557 . C G, 2307.04 . AS_QUALapprox=|2317|0;AS_VarDP=0|70|0;DP=72;QUALapprox=2317;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,70,0:70:99:2317,0,2317:0,0,29,41 +chrX 1754558 . A . . END=1754772 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1800 +chrX 1754773 . G A, 298.04 . AS_QUALapprox=|308|0;AS_VarDP=32|41|0;BaseQRankSum=1.486;DP=75;MQRankSum=0.000;QUALapprox=308;RAW_GT_COUNT=0,0,1;RAW_MQandDP=270000,75;ReadPosRankSum=1.807;VarDP=73 GT:AD:DP:GQ:PL:SB 1:32,41,0:73:99:308,0,1330:17,15,31,10 +chrX 1754774 . T . . END=1754820 GT:DP:GQ:MIN_DP:PL 0:76:99:76:0,1800 +chrX 1754821 . T C, 2235.04 . AS_QUALapprox=|2245|0;AS_VarDP=0|76|0;DP=77;QUALapprox=2245;RAW_GT_COUNT=0,0,1;RAW_MQandDP=277200,77;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,76,0:76:99:2245,0,2245:0,0,43,33 +chrX 1754822 . G . . END=1755828 GT:DP:GQ:MIN_DP:PL 0:76:99:76:0,1704 +chrX 1755829 . A G, 434.04 . AS_QUALapprox=|444|0;AS_VarDP=29|43|0;BaseQRankSum=-0.525;DP=74;MQRankSum=0.000;QUALapprox=444;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;ReadPosRankSum=-0.523;VarDP=72 GT:AD:DP:GQ:PL:SB 1:29,43,0:72:99:444,0,1411:14,15,17,26 +chrX 1755830 . C . . END=1756549 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1614 +chrX 1756550 . A G, 2094.04 . AS_QUALapprox=|2104|0;AS_VarDP=0|64|0;DP=66;QUALapprox=2104;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237025,66;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,64,0:64:99:2104,0,2104:0,0,32,32 +chrX 1756551 . T . . END=1756840 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1653 +chrX 1756841 . A AAAAT, 59.01 . AS_QUALapprox=|69|0;AS_VarDP=26|27|0;BaseQRankSum=1.170;DP=66;MQRankSum=0.027;QUALapprox=69;RAW_GT_COUNT=0,0,1;RAW_MQandDP=236906,66;ReadPosRankSum=-1.362;VarDP=53 GT:AD:DP:GQ:PL:SB 1:26,27,0:53:69:69,0,1215:11,15,11,16 +chrX 1756842 . A . . END=1757342 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1419 +chrX 1757343 . CA C, 1131.01 . AS_QUALapprox=|1141|0;AS_VarDP=0|38|0;DP=46;QUALapprox=1141;RAW_GT_COUNT=0,0,1;RAW_MQandDP=163296,46;VarDP=38 GT:AD:DP:GQ:PL:SB 1:0,38,0:38:99:1141,0,1141:0,0,18,20 +chrX 1757345 . A . . END=1757500 GT:DP:GQ:MIN_DP:PL 0:44:99:44:0,975 +chrX 1757501 . C CAA,CAAAA, 1167.01 . AS_QUALapprox=|968|1177|0;AS_VarDP=0|15|23|0;DP=58;QUALapprox=1177;RAW_GT_COUNT=0,0,1;RAW_MQandDP=196366,58;VarDP=38 GT:AD:DP:GQ:PL:SB 2:0,15,23,0:38:99:1177,209,0,902:0,0,22,16 +chrX 1757502 . A . . END=1758111 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,218 +chrX 1758112 . A G, 2063.04 . AS_QUALapprox=|2073|0;AS_VarDP=1|66|0;BaseQRankSum=1.706;DP=69;MQRankSum=0.000;QUALapprox=2073;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;ReadPosRankSum=1.371;VarDP=67 GT:AD:DP:GQ:PL:SB 1:1,66,0:67:99:2073,0,2097:0,1,38,28 +chrX 1758113 . G . . END=1759412 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1320 +chrX 1759413 . A G, 2422.04 . AS_QUALapprox=|2432|0;AS_VarDP=0|74|0;DP=74;QUALapprox=2432;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,74,0:74:99:2432,0,2432:0,0,37,37 +chrX 1759414 . A . . END=1759495 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1800 +chrX 1759496 . A G, 1970.04 . AS_QUALapprox=|1980|0;AS_VarDP=0|61|0;DP=63;QUALapprox=1980;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,61,0:61:99:1980,0,1980:0,0,32,29 +chrX 1759497 . C . . END=1760086 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,675 +chrX 1760087 . C . . END=1760087 GT:DP:GQ:MIN_DP:PL 0:34:0:34:0,0 +chrX 1760088 . T . . END=1760090 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,1036 +chrX 1760091 . C . . END=1760091 GT:DP:GQ:MIN_DP:PL 0:32:0:32:0,0 +chrX 1760092 . T . . END=1760125 GT:DP:GQ:MIN_DP:PL 0:32:51:32:0,51 +chrX 1760126 . C T,CTTCT,CTTCCTTCCTTCT, 586.01 . AS_QUALapprox=|363|419|596|0;AS_VarDP=0|14|0|1|0;DP=35;QUALapprox=596;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122306,35;VarDP=15 GT:AD:DP:GQ:PL:SB 3:0,14,0,1,0:15:99:596,233,177,0,732:0,0,9,6 +chrX 1760127 . T . . END=1760221 GT:DP:GQ:MIN_DP:PL 0:37:99:37:0,139 +chrX 1760222 . C T,CTCTT, 1007.01 . AS_QUALapprox=|723|1017|0;AS_VarDP=0|16|18|0;DP=43;QUALapprox=1017;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154800,43;VarDP=34 GT:AD:DP:GQ:PL:SB 2:0,16,18,0:34:99:1017,294,0,1004:0,0,18,16 +chrX 1760223 . T . . END=1760298 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1191 +chrX 1760299 . C T, 224.04 . AS_QUALapprox=|234|0;AS_VarDP=30|35|0;BaseQRankSum=-1.306;DP=68;MQRankSum=0.000;QUALapprox=234;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;ReadPosRankSum=0.627;VarDP=65 GT:AD:DP:GQ:PL:SB 1:30,35,0:65:99:234,0,1553:15,15,16,19 +chrX 1760300 . C . . END=1760301 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1800 +chrX 1760302 . A G, 224.04 . AS_QUALapprox=|234|0;AS_VarDP=30|35|0;BaseQRankSum=-0.747;DP=67;MQRankSum=0.000;QUALapprox=234;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;ReadPosRankSum=0.976;VarDP=65 GT:AD:DP:GQ:PL:SB 1:30,35,0:65:99:234,0,1553:15,15,16,19 +chrX 1760303 . C . . END=1761405 GT:DP:GQ:MIN_DP:PL 0:63:49:61:0,49 +chrX 1761406 . AT A,ATT, 1065.01 . AS_QUALapprox=|1075|0|0;AS_VarDP=0|38|2|0;DP=51;QUALapprox=1075;RAW_GT_COUNT=0,0,1;RAW_MQandDP=181170,51;VarDP=40 GT:AD:DP:GQ:PL:SB 1:0,38,2,0:40:99:1075,0,1391,1269:0,0,22,18 +chrX 1761408 . T . . END=1761504 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1392 +chrX 1761505 . G . . END=1761505 GT:DP:GQ:MIN_DP:PL 0:45:10:45:0,10 +chrX 1761506 . A . . END=1762451 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,153 +chrX 1762452 . T . . END=1762461 GT:DP:GQ:MIN_DP:PL 0:67:3:67:0,3 +chrX 1762462 . G . . END=1762531 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,1256 +chrX 1762532 . A G, 1593.04 . AS_QUALapprox=|1603|0;AS_VarDP=0|49|0;DP=52;QUALapprox=1603;RAW_GT_COUNT=0,0,1;RAW_MQandDP=184550,52;VarDP=49 GT:AD:DP:GQ:PL:SB 1:0,49,0:49:99:1603,0,1603:0,0,21,28 +chrX 1762533 . T . . END=1762936 GT:DP:GQ:MIN_DP:PL 0:65:36:62:0,36 +chrX 1762937 . T TATTA, 569.01 . AS_QUALapprox=|579|0;AS_VarDP=18|31|0;BaseQRankSum=-1.631;DP=54;MQRankSum=0.000;QUALapprox=579;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;ReadPosRankSum=-0.664;VarDP=49 GT:AD:DP:GQ:PL:SB 1:18,31,0:49:99:579,0,1390:13,5,13,18 +chrX 1762938 . A . . END=1763582 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,144 +chrX 1763583 . C A, 1942.04 . AS_QUALapprox=|1952|0;AS_VarDP=0|47|0;DP=47;QUALapprox=1952;RAW_GT_COUNT=0,0,1;RAW_MQandDP=149780,47;VarDP=47 GT:AD:DP:GQ:PL:SB 1:0,47,0:47:99:1952,0,1952:0,0,26,21 +chrX 1763584 . T . . END=1763601 GT:DP:GQ:MIN_DP:PL 0:43:88:43:0,88 +chrX 1763602 . CCACGGCTGCCTTGAAGGTTGTGAAATTGCTCACGGCTGCCTTGAAGGTTGTGAAATTGCT C,TCACGGCTGCCTTGAAGGTTGTGAAATTGCTCACGGCTGCCTTGAAGGTTGTGAAATTGCT, 737 . AS_QUALapprox=|747|734|0;AS_VarDP=0|22|18|0;DP=45;QUALapprox=747;RAW_GT_COUNT=0,0,1;RAW_MQandDP=130874,45;VarDP=40 GT:AD:DP:GQ:PL:SB 1:0,22,18,0:40:13:747,0,13,936:0,0,22,18 +chrX 1763663 . C . . END=1763777 GT:DP:GQ:MIN_DP:PL 0:12:99:12:0,139 +chrX 1763778 . T G, 75.04 . AS_QUALapprox=|85|0;AS_VarDP=1|4|0;BaseQRankSum=-0.253;DP=5;MQRankSum=-0.842;QUALapprox=85;RAW_GT_COUNT=0,0,1;RAW_MQandDP=5635,5;ReadPosRankSum=-0.524;VarDP=5 GT:AD:DP:GQ:PL:SB 1:1,4,0:5:85:85,0,120:0,1,0,4 +chrX 1763779 . T . . END=1763930 GT:DP:GQ:MIN_DP:PL 0:3:35:3:0,35 +chrX 1763931 . C . . END=1763931 GT:DP:GQ:MIN_DP:PL 0:3:0:3:0,0 +chrX 1763932 . T . . END=1763942 GT:DP:GQ:MIN_DP:PL 0:2:35:1:0,35 +chrX 1763943 . T . . END=1764577 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1764578 . G . . END=1764580 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 1764581 . T . . END=1764581 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1764582 . G . . END=1764620 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1764621 . C . . END=1764621 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1764622 . T . . END=1764624 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1764625 . C . . END=1764625 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 1764626 . G . . END=1764626 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1764627 . G . . END=1764627 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 1764628 . C . . END=1764635 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1764636 . A . . END=1764636 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 1764637 . A . . END=1764644 GT:DP:GQ:MIN_DP:PL 0:3:25:3:0,25 +chrX 1764645 . C . . END=1764645 GT:DP:GQ:MIN_DP:PL 0:3:0:3:0,0 +chrX 1764646 . A . . END=1764672 GT:DP:GQ:MIN_DP:PL 0:4:80:4:0,80 +chrX 1764673 . T . . END=1764673 GT:DP:GQ:MIN_DP:PL 0:4:0:4:0,0 +chrX 1764674 . G . . END=1764800 GT:DP:GQ:MIN_DP:PL 0:5:20:4:0,20 +chrX 1764801 . C . . END=1764801 GT:DP:GQ:MIN_DP:PL 0:4:0:4:0,0 +chrX 1764802 . T . . END=1765252 GT:DP:GQ:MIN_DP:PL 0:34:70:34:0,70 +chrX 1765253 . G A, 2044.04 . AS_QUALapprox=|2054|0;AS_VarDP=0|63|0;DP=65;QUALapprox=2054;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,63,0:63:99:2054,0,2054:0,0,29,34 +chrX 1765254 . T . . END=1765473 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1800 +chrX 1765474 . G T, 141.04 . AS_QUALapprox=|151|0;AS_VarDP=30|35|0;BaseQRankSum=-0.212;DP=69;MQRankSum=0.000;QUALapprox=151;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;ReadPosRankSum=-0.671;VarDP=65 GT:AD:DP:GQ:PL:SB 1:30,35,0:65:99:151,0,1124:15,15,18,17 +chrX 1765475 . G . . END=1765525 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1800 +chrX 1765526 . T G, 2062.04 . AS_QUALapprox=|2072|0;AS_VarDP=0|66|0;DP=68;QUALapprox=2072;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;VarDP=66 GT:AD:DP:GQ:PL:SB 1:0,66,0:66:99:2072,0,2072:0,0,26,40 +chrX 1765527 . G . . END=1765901 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,302 +chrX 1765902 . G A, 70.04 . AS_QUALapprox=|80|0;AS_VarDP=22|24|0;BaseQRankSum=0.529;DP=47;MQRankSum=0.000;QUALapprox=80;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;ReadPosRankSum=1.023;VarDP=46 GT:AD:DP:GQ:PL:SB 1:22,24,0:46:80:80,0,789:7,15,10,14 +chrX 1765903 . G . . END=1766001 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1568 +chrX 1766002 . C . . END=1766002 GT:DP:GQ:MIN_DP:PL 0:48:0:48:0,0 +chrX 1766003 . A . . END=1766154 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1414 +chrX 1766155 . G T, 604.04 . AS_QUALapprox=|1601|0;AS_VarDP=0|49|0;DP=80;QUALapprox=1601;RAW_GT_COUNT=0,0,1;RAW_MQandDP=285425,80;VarDP=49 GT:AD:DP:GQ:PL:SB 1:0,49,0:49:99:1601,0,1723:0,0,11,30 +chrX 1766156 . C . . END=1766181 GT:DP:GQ:MIN_DP:PL 0:73:99:73:0,441 +chrX 1766182 . A G, 92.04 . AS_QUALapprox=|102|0;AS_VarDP=31|45|0;BaseQRankSum=-0.752;DP=77;MQRankSum=1.232;QUALapprox=102;RAW_GT_COUNT=0,0,1;RAW_MQandDP=272561,77;ReadPosRankSum=0.100;VarDP=76 GT:AD:DP:GQ:PL:SB 1:31,45,0:76:99:102,0,1455:12,19,12,33 +chrX 1766183 . A . . END=1766465 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1680 +chrX 1766466 . T C, 446.04 . AS_QUALapprox=|456|0;AS_VarDP=24|41|0;BaseQRankSum=-1.736;DP=69;MQRankSum=0.000;QUALapprox=456;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;ReadPosRankSum=-2.407;VarDP=65 GT:AD:DP:GQ:PL:SB 1:24,41,0:65:99:456,0,1270:16,8,21,20 +chrX 1766467 . G . . END=1766677 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1800 +chrX 1766678 . G A, 487.04 . AS_QUALapprox=|497|0;AS_VarDP=24|38|0;BaseQRankSum=1.291;DP=66;MQRankSum=-0.214;QUALapprox=497;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234938,66;ReadPosRankSum=0.036;VarDP=62 GT:AD:DP:GQ:PL:SB 1:24,38,0:62:99:497,0,1321:10,14,15,23 +chrX 1766679 . C . . END=1767509 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1419 +chrX 1767510 . T A, 1996.04 . AS_QUALapprox=|2006|0;AS_VarDP=0|60|0;DP=62;QUALapprox=2006;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:2006,0,2006:0,0,32,28 +chrX 1767511 . G . . END=1767812 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1498 +chrX 1767813 . A G, 1395.04 . AS_QUALapprox=|1405|0;AS_VarDP=0|43|0;DP=43;QUALapprox=1405;RAW_GT_COUNT=0,0,1;RAW_MQandDP=144104,43;VarDP=43 GT:AD:DP:GQ:PL:SB 1:0,43,0:43:99:1405,0,1405:0,0,18,25 +chrX 1767814 . A . . END=1767841 GT:DP:GQ:MIN_DP:PL 0:41:99:41:0,1097 +chrX 1767842 . C T, 1097.04 . AS_QUALapprox=|1107|0;AS_VarDP=0|33|0;DP=34;QUALapprox=1107;RAW_GT_COUNT=0,0,1;RAW_MQandDP=113704,34;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1107,0,1107:0,0,13,20 +chrX 1767843 . G . . END=1767862 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,315 +chrX 1767863 . C CAAAA, 1180.01 . AS_QUALapprox=|1190|0;AS_VarDP=0|31|0;DP=48;QUALapprox=1190;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158759,48;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1190,0,1191:0,0,9,22 +chrX 1767864 . A . . END=1768551 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,1052 +chrX 1768552 . T TTC, 1487.01 . AS_QUALapprox=|1497|0;AS_VarDP=0|40|0;DP=44;QUALapprox=1497;RAW_GT_COUNT=0,0,1;RAW_MQandDP=157825,44;VarDP=40 GT:AD:DP:GQ:PL:SB 1:0,40,0:40:99:1497,0,1497:0,0,27,13 +chrX 1768553 . T . . END=1768759 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1326 +chrX 1768760 . C A, 2227.04 . AS_QUALapprox=|2237|0;AS_VarDP=1|71|0;BaseQRankSum=1.724;DP=74;MQRankSum=0.000;QUALapprox=2237;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;ReadPosRankSum=-0.241;VarDP=72 GT:AD:DP:GQ:PL:SB 1:1,71,0:72:99:2237,0,2262:0,1,43,28 +chrX 1768761 . T . . END=1769297 GT:DP:GQ:MIN_DP:PL 0:65:34:55:0,34 +chrX 1769298 . T C, 1532.04 . AS_QUALapprox=|1542|0;AS_VarDP=0|49|0;DP=51;QUALapprox=1542;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=49 GT:AD:DP:GQ:PL:SB 1:0,49,0:49:99:1542,0,1542:0,0,21,28 +chrX 1769299 . A . . END=1769728 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1364 +chrX 1769729 . T C, 1708.04 . AS_QUALapprox=|1718|0;AS_VarDP=1|53|0;BaseQRankSum=-0.330;DP=56;MQRankSum=0.000;QUALapprox=1718;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201025,56;ReadPosRankSum=-1.123;VarDP=54 GT:AD:DP:GQ:PL:SB 1:1,53,0:54:99:1718,0,1753:1,0,19,34 +chrX 1769730 . T . . END=1769850 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1245 +chrX 1769851 . C CA, 1093.01 . AS_QUALapprox=|1103|0;AS_VarDP=1|41|0;BaseQRankSum=-0.468;DP=48;MQRankSum=-0.112;QUALapprox=1103;RAW_GT_COUNT=0,0,1;RAW_MQandDP=170225,48;ReadPosRankSum=1.569;VarDP=42 GT:AD:DP:GQ:PL:SB 1:1,41,0:42:99:1103,0,1131:0,1,24,17 +chrX 1769852 . A . . END=1770301 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1551 +chrX 1770302 . C T, 2089.04 . AS_QUALapprox=|2099|0;AS_VarDP=0|62|0;DP=66;QUALapprox=2099;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:2099,0,2099:0,0,39,23 +chrX 1770303 . A . . END=1770995 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1215 +chrX 1770996 . AT A,ATT, 108.01 . AS_QUALapprox=|0|118|0;AS_VarDP=1|9|13|0;BaseQRankSum=-0.810;DP=45;MQRankSum=0.000;QUALapprox=118;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162000,45;ReadPosRankSum=0.744;VarDP=23 GT:AD:DP:GQ:PL:SB 2:1,9,13,0:23:99:118,143,0,268:0,1,6,16 +chrX 1770998 . T . . END=1772330 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,734 +chrX 1772331 . C . . END=1772331 GT:DP:GQ:MIN_DP:PL 0:66:15:66:0,15 +chrX 1772332 . G . . END=1773148 GT:DP:GQ:MIN_DP:PL 0:56:40:56:0,40 +chrX 1773149 . T . . END=1773149 GT:DP:GQ:MIN_DP:PL 0:16:4:16:0,4 +chrX 1773150 . T . . END=1773253 GT:DP:GQ:MIN_DP:PL 0:15:99:15:0,183 +chrX 1773254 . CCTTTCTTTCTTT C, 335.01 . AS_QUALapprox=|345|0;AS_VarDP=1|8|0;BaseQRankSum=-0.431;DP=11;MQRankSum=-0.589;QUALapprox=345;RAW_GT_COUNT=0,0,1;RAW_MQandDP=34154,11;ReadPosRankSum=0.000;VarDP=9 GT:AD:DP:GQ:PL:SB 1:1,8,0:9:99:345,0,348:0,1,1,7 +chrX 1773267 . C . . END=1773355 GT:DP:GQ:MIN_DP:PL 0:14:99:14:0,292 +chrX 1773356 . CT C, 415.01 . AS_QUALapprox=|425|0;AS_VarDP=0|13|0;DP=21;QUALapprox=425;RAW_GT_COUNT=0,0,1;RAW_MQandDP=69004,21;VarDP=13 GT:AD:DP:GQ:PL:SB 1:0,13,0:13:99:425,0,425:0,0,5,8 +chrX 1773358 . T . . END=1773452 GT:DP:GQ:MIN_DP:PL 0:33:29:32:0,29 +chrX 1773453 . T . . END=1773453 GT:DP:GQ:MIN_DP:PL 0:73:0:73:0,0 +chrX 1773454 . G . . END=1774154 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1359 +chrX 1774155 . C T, 231.04 . AS_QUALapprox=|241|0;AS_VarDP=34|37|0;BaseQRankSum=3.396;DP=74;MQRankSum=0.000;QUALapprox=241;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;ReadPosRankSum=0.340;VarDP=71 GT:AD:DP:GQ:PL:SB 1:34,37,0:71:99:241,0,1246:19,15,13,24 +chrX 1774156 . G . . END=1774321 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,421 +chrX 1774322 . T G, 234.04 . AS_QUALapprox=|244|0;AS_VarDP=30|38|0;BaseQRankSum=-0.552;DP=74;MQRankSum=1.625;QUALapprox=244;RAW_GT_COUNT=0,0,1;RAW_MQandDP=264626,74;ReadPosRankSum=1.384;VarDP=68 GT:AD:DP:GQ:PL:SB 1:30,38,0:68:99:244,0,1242:16,14,20,18 +chrX 1774323 . G . . END=1774582 GT:DP:GQ:MIN_DP:PL 0:73:99:73:0,286 +chrX 1774583 . C . . END=1774584 GT:DP:GQ:MIN_DP:PL 0:76:0:76:0,0 +chrX 1774585 . T . . END=1774585 GT:DP:GQ:MIN_DP:PL 0:76:99:76:0,278 +chrX 1774586 . G . . END=1774587 GT:DP:GQ:MIN_DP:PL 0:76:0:76:0,0 +chrX 1774588 . G . . END=1774588 GT:DP:GQ:MIN_DP:PL 0:76:99:76:0,128 +chrX 1774589 . T . . END=1774589 GT:DP:GQ:MIN_DP:PL 0:75:0:75:0,0 +chrX 1774590 . T . . END=1774594 GT:DP:GQ:MIN_DP:PL 0:78:99:78:0,171 +chrX 1774595 . C . . END=1774595 GT:DP:GQ:MIN_DP:PL 0:75:14:75:0,14 +chrX 1774596 . A . . END=1775074 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1568 +chrX 1775075 . CTTTTTTT C, 575.01 . AS_QUALapprox=|585|0;AS_VarDP=6|16|0;BaseQRankSum=-1.268;DP=53;MQRankSum=1.735;QUALapprox=585;RAW_GT_COUNT=0,0,1;RAW_MQandDP=186009,53;ReadPosRankSum=0.812;VarDP=22 GT:AD:DP:GQ:PL:SB 1:6,16,0:22:99:585,0,703:6,0,5,11 +chrX 1775083 . T . . END=1775223 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,596 +chrX 1775224 . G A, 1921.04 . AS_QUALapprox=|1931|0;AS_VarDP=1|58|0;BaseQRankSum=-0.243;DP=60;MQRankSum=0.000;QUALapprox=1931;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;ReadPosRankSum=-1.234;VarDP=59 GT:AD:DP:GQ:PL:SB 1:1,58,0:59:99:1931,0,1966:0,1,29,29 +chrX 1775225 . C . . END=1775456 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1464 +chrX 1775457 . C T, 1494.04 . AS_QUALapprox=|1504|0;AS_VarDP=2|48|0;BaseQRankSum=1.634;DP=52;MQRankSum=-0.102;QUALapprox=1504;RAW_GT_COUNT=0,0,1;RAW_MQandDP=186625,52;ReadPosRankSum=-0.099;VarDP=50 GT:AD:DP:GQ:PL:SB 1:2,48,0:50:99:1504,0,1547:2,0,24,24 +chrX 1775458 . T . . END=1775670 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,308 +chrX 1775671 . G C, 1922.04 . AS_QUALapprox=|1932|0;AS_VarDP=1|57|0;BaseQRankSum=3.561;DP=62;MQRankSum=0.000;QUALapprox=1932;RAW_GT_COUNT=0,0,1;RAW_MQandDP=220304,62;ReadPosRankSum=-1.135;VarDP=58 GT:AD:DP:GQ:PL:SB 1:1,57,0:58:99:1932,0,1942:0,1,23,34 +chrX 1775672 . A . . END=1775969 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,634 +chrX 1775970 . ATT A, 1206.01 . AS_QUALapprox=|1216|0;AS_VarDP=0|37|0;DP=53;QUALapprox=1216;RAW_GT_COUNT=0,0,1;RAW_MQandDP=181382,53;VarDP=37 GT:AD:DP:GQ:PL:SB 1:0,37,0:37:99:1216,0,1216:0,0,13,24 +chrX 1775973 . T . . END=1776030 GT:DP:GQ:MIN_DP:PL 0:47:99:47:0,1280 +chrX 1776031 . C T, 2365.04 . AS_QUALapprox=|2375|0;AS_VarDP=0|53|0;DP=53;QUALapprox=2375;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=53 GT:AD:DP:GQ:PL:SB 1:0,53,0:53:99:2375,0,2375:0,0,22,31 +chrX 1776032 . G . . END=1776043 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1677 +chrX 1776044 . C A, 2555.04 . AS_QUALapprox=|2565|0;AS_VarDP=0|57|0;DP=57;QUALapprox=2565;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:2565,0,2565:0,0,23,34 +chrX 1776045 . T . . END=1776068 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1777 +chrX 1776069 . C T, 2960.04 . AS_QUALapprox=|2970|0;AS_VarDP=0|66|0;DP=66;QUALapprox=2970;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=66 GT:AD:DP:GQ:PL:SB 1:0,66,0:66:99:2970,0,2970:0,0,30,36 +chrX 1776070 . C G, 2960.04 . AS_QUALapprox=|2970|0;AS_VarDP=0|66|0;DP=67;QUALapprox=2970;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=66 GT:AD:DP:GQ:PL:SB 1:0,66,0:66:99:2970,0,2970:0,0,30,36 +chrX 1776071 . G . . END=1777271 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1288 +chrX 1777272 . T C, 2256.04 . AS_QUALapprox=|2266|0;AS_VarDP=0|53|0;DP=54;QUALapprox=2266;RAW_GT_COUNT=0,0,1;RAW_MQandDP=192400,54;VarDP=53 GT:AD:DP:GQ:PL:SB 1:0,53,0:53:99:2266,0,2266:0,0,27,26 +chrX 1777273 . C . . END=1777280 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,1607 +chrX 1777281 . A G, 2183.04 . AS_QUALapprox=|2193|0;AS_VarDP=0|51|0;DP=53;QUALapprox=2193;RAW_GT_COUNT=0,0,1;RAW_MQandDP=188800,53;VarDP=51 GT:AD:DP:GQ:PL:SB 1:0,51,0:51:99:2193,0,2193:0,0,24,27 +chrX 1777282 . T . . END=1777430 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1699 +chrX 1777431 . G A, 2392.04 . AS_QUALapprox=|2402|0;AS_VarDP=0|73|0;DP=75;QUALapprox=2402;RAW_GT_COUNT=0,0,1;RAW_MQandDP=270000,75;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,73,0:73:99:2402,0,2402:0,0,33,40 +chrX 1777432 . C . . END=1777538 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1800 +chrX 1777539 . G A, 1953.04 . AS_QUALapprox=|1963|0;AS_VarDP=0|60|0;DP=64;QUALapprox=1963;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:1963,0,1963:0,0,30,30 +chrX 1777540 . A . . END=1777620 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1800 +chrX 1777621 . AAGTC A, 2869.01 . AS_QUALapprox=|2879|0;AS_VarDP=0|66|0;DP=69;QUALapprox=2879;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=66 GT:AD:DP:GQ:PL:SB 1:0,66,0:66:99:2879,0,2879:0,0,39,27 +chrX 1777626 . A . . END=1777720 GT:DP:GQ:MIN_DP:PL 0:84:99:84:0,1800 +chrX 1777721 . G C, 2406.04 . AS_QUALapprox=|2416|0;AS_VarDP=0|75|0;DP=77;QUALapprox=2416;RAW_GT_COUNT=0,0,1;RAW_MQandDP=277200,77;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,75,0:75:99:2416,0,2416:0,0,44,31 +chrX 1777722 . A . . END=1778545 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1791 +chrX 1778546 . T C, 2025.04 . AS_QUALapprox=|2035|0;AS_VarDP=0|62|0;DP=63;QUALapprox=2035;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:2035,0,2035:0,0,32,30 +chrX 1778547 . T . . END=1779434 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1400 +chrX 1779435 . G T, 2233.04 . AS_QUALapprox=|2243|0;AS_VarDP=0|68|0;DP=70;QUALapprox=2243;RAW_GT_COUNT=0,0,1;RAW_MQandDP=251425,70;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,68,0:68:99:2243,0,2243:0,0,28,40 +chrX 1779436 . A . . END=1779449 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1800 +chrX 1779450 . C A, 2271.04 . AS_QUALapprox=|2281|0;AS_VarDP=0|71|0;DP=72;QUALapprox=2281;RAW_GT_COUNT=0,0,1;RAW_MQandDP=258625,72;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,71,0:71:99:2281,0,2281:0,0,31,40 +chrX 1779451 . C . . END=1779481 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1800 +chrX 1779482 . C G, 2247.04 . AS_QUALapprox=|2257|0;AS_VarDP=0|70|0;DP=71;QUALapprox=2257;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,70,0:70:99:2257,0,2257:0,0,35,35 +chrX 1779483 . T . . END=1779554 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1800 +chrX 1779555 . C T, 2393.04 . AS_QUALapprox=|2403|0;AS_VarDP=0|70|0;DP=73;QUALapprox=2403;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,70,0:70:99:2403,0,2403:0,0,38,32 +chrX 1779556 . G . . END=1779938 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1666 +chrX 1779939 . TTAGAG T, 2615.01 . AS_QUALapprox=|2625|0;AS_VarDP=0|59|0;DP=64;QUALapprox=2625;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:2625,0,2625:0,0,27,32 +chrX 1779945 . T . . END=1779972 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1800 +chrX 1779973 . T G, 2038.04 . AS_QUALapprox=|2048|0;AS_VarDP=0|63|0;DP=68;QUALapprox=2048;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,63,0:63:99:2048,0,2048:0,0,26,37 +chrX 1779974 . T . . END=1780475 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1569 +chrX 1780476 . C T, 1634.04 . AS_QUALapprox=|1644|0;AS_VarDP=0|50|0;DP=51;QUALapprox=1644;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,50,0:50:99:1644,0,1644:0,0,19,31 +chrX 1780477 . T . . END=1781034 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1552 +chrX 1781035 . C CT, 126.01 . AS_QUALapprox=|136|0;AS_VarDP=16|22|0;BaseQRankSum=0.901;DP=52;MQRankSum=1.226;QUALapprox=136;RAW_GT_COUNT=0,0,1;RAW_MQandDP=184804,52;ReadPosRankSum=-0.577;VarDP=38 GT:AD:DP:GQ:PL:SB 1:16,22,0:38:99:136,0,512:10,6,7,15 +chrX 1781036 . T . . END=1781363 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1305 +chrX 1781364 . AAG A, 255.01 . AS_QUALapprox=|265|0;AS_VarDP=26|32|0;BaseQRankSum=-0.407;DP=62;MQRankSum=0.000;QUALapprox=265;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;ReadPosRankSum=0.188;VarDP=58 GT:AD:DP:GQ:PL:SB 1:26,32,0:58:99:265,0,1366:17,9,20,12 +chrX 1781367 . A . . END=1781418 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1696 +chrX 1781419 . T C, 209.04 . AS_QUALapprox=|219|0;AS_VarDP=34|41|0;BaseQRankSum=0.061;DP=78;MQRankSum=0.000;QUALapprox=219;RAW_GT_COUNT=0,0,1;RAW_MQandDP=280800,78;ReadPosRankSum=0.745;VarDP=75 GT:AD:DP:GQ:PL:SB 1:34,41,0:75:99:219,0,1314:22,12,24,17 +chrX 1781420 . T . . END=1782893 GT:DP:GQ:MIN_DP:PL 0:55:56:41:0,56 +chrX 1782894 . G C, 129.04 . AS_QUALapprox=|139|0;AS_VarDP=21|25|0;BaseQRankSum=0.362;DP=47;MQRankSum=0.000;QUALapprox=139;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;ReadPosRankSum=1.070;VarDP=46 GT:AD:DP:GQ:PL:SB 1:21,25,0:46:99:139,0,809:13,8,14,11 +chrX 1782895 . G . . END=1783666 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,259 +chrX 1783667 . C . . END=1783667 GT:DP:GQ:MIN_DP:PL 0:74:9:74:0,9 +chrX 1783668 . C . . END=1786553 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1622 +chrX 1786554 . T C, 78.04 . AS_QUALapprox=|88|0;AS_VarDP=28|33|0;BaseQRankSum=-1.077;DP=61;MQRankSum=0.000;QUALapprox=88;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;ReadPosRankSum=0.304;VarDP=61 GT:AD:DP:GQ:PL:SB 1:28,33,0:61:88:88,0,1021:14,14,19,14 +chrX 1786555 . T . . END=1788187 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1126 +chrX 1788188 . A G, 140.04 . AS_QUALapprox=|150|0;AS_VarDP=33|36|0;BaseQRankSum=1.183;DP=72;MQRankSum=0.000;QUALapprox=150;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;ReadPosRankSum=2.932;VarDP=69 GT:AD:DP:GQ:PL:SB 1:33,36,0:69:99:150,0,1211:14,19,13,23 +chrX 1788189 . C . . END=1788216 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1800 +chrX 1788217 . C CCTGA, 597.01 . AS_QUALapprox=|607|0;AS_VarDP=30|43|0;BaseQRankSum=-1.526;DP=74;MQRankSum=0.000;QUALapprox=607;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;ReadPosRankSum=0.774;VarDP=73 GT:AD:DP:GQ:PL:SB 1:30,43,0:73:99:607,0,1935:13,17,15,28 +chrX 1788218 . C . . END=1789357 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1147 +chrX 1789358 . T C, 352.04 . AS_QUALapprox=|362|0;AS_VarDP=29|40|0;BaseQRankSum=-0.263;DP=70;MQRankSum=0.272;QUALapprox=362;RAW_GT_COUNT=0,0,1;RAW_MQandDP=250741,70;ReadPosRankSum=0.645;VarDP=69 GT:AD:DP:GQ:PL:SB 1:29,40,0:69:99:362,0,1340:18,11,29,11 +chrX 1789359 . T . . END=1789401 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1800 +chrX 1789402 . G A, 196.04 . AS_QUALapprox=|206|0;AS_VarDP=36|39|0;BaseQRankSum=2.806;DP=77;MQRankSum=-0.469;QUALapprox=206;RAW_GT_COUNT=0,0,1;RAW_MQandDP=275130,77;ReadPosRankSum=0.382;VarDP=75 GT:AD:DP:GQ:PL:SB 1:36,39,0:75:99:206,0,1300:23,13,27,12 +chrX 1789403 . A . . END=1789882 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,128 +chrX 1789883 . T C, 5.04 . AS_QUALapprox=|15|0;AS_VarDP=24|24|0;BaseQRankSum=0.867;DP=52;MQRankSum=0.000;QUALapprox=15;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;ReadPosRankSum=-0.897;VarDP=48 GT:AD:DP:GQ:PL:SB 1:24,24,0:48:15:15,0,769:13,11,14,10 +chrX 1789884 . G . . END=1789983 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1409 +chrX 1789984 . G . . END=1789986 GT:DP:GQ:MIN_DP:PL 0:57:19:57:0,19 +chrX 1789987 . A . . END=1790143 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1623 +chrX 1790144 . A C, 393.04 . AS_QUALapprox=|403|0;AS_VarDP=20|31|0;BaseQRankSum=1.469;DP=55;MQRankSum=0.000;QUALapprox=403;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;ReadPosRankSum=0.145;VarDP=51 GT:AD:DP:GQ:PL:SB 1:20,31,0:51:99:403,0,1058:10,10,16,15 +chrX 1790145 . C . . END=1790592 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1548 +chrX 1790593 . C T, 119.04 . AS_QUALapprox=|129|0;AS_VarDP=26|30|0;BaseQRankSum=-0.708;DP=60;MQRankSum=-1.303;QUALapprox=129;RAW_GT_COUNT=0,0,1;RAW_MQandDP=214850,60;ReadPosRankSum=-1.184;VarDP=56 GT:AD:DP:GQ:PL:SB 1:26,30,0:56:99:129,0,953:14,12,10,20 +chrX 1790594 . G . . END=1790731 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1023 +chrX 1790732 . A AC, 244.01 . AS_QUALapprox=|254|0;AS_VarDP=21|27|0;BaseQRankSum=-1.044;DP=51;MQRankSum=-0.506;QUALapprox=254;RAW_GT_COUNT=0,0,1;RAW_MQandDP=171636,51;ReadPosRankSum=-2.820;VarDP=48 GT:AD:DP:GQ:PL:SB 1:21,27,0:48:99:254,0,1146:10,11,13,14 +chrX 1790733 . A . . END=1790733 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,1395 +chrX 1790734 . A AAAAACAAAAAAC, 289.01 . AS_QUALapprox=|299|0;AS_VarDP=21|28|0;BaseQRankSum=0.658;DP=51;MQRankSum=-0.461;QUALapprox=299;RAW_GT_COUNT=0,0,1;RAW_MQandDP=171636,51;ReadPosRankSum=-2.653;VarDP=49 GT:AD:DP:GQ:PL:SB 1:21,28,0:49:99:299,0,1191:10,11,14,14 +chrX 1790735 . A . . END=1791140 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1376 +chrX 1791141 . C T, 307.04 . AS_QUALapprox=|317|0;AS_VarDP=27|37|0;BaseQRankSum=-0.716;DP=64;MQRankSum=0.000;QUALapprox=317;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;ReadPosRankSum=-0.490;VarDP=64 GT:AD:DP:GQ:PL:SB 1:27,37,0:64:99:317,0,1221:13,14,19,18 +chrX 1791142 . T . . END=1791166 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1800 +chrX 1791167 . AC A,CC, 264.01 . AS_QUALapprox=|274|0|0;AS_VarDP=24|34|2|0;BaseQRankSum=-0.535;DP=61;MQRankSum=0.000;QUALapprox=274;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;ReadPosRankSum=-0.151;VarDP=60 GT:AD:DP:GQ:PL:SB 1:24,34,2,0:60:99:274,0,1491,1307:13,11,19,17 +chrX 1791169 . C . . END=1791354 GT:DP:GQ:MIN_DP:PL 0:65:47:64:0,47 +chrX 1791355 . T C, 184.04 . AS_QUALapprox=|194|0;AS_VarDP=29|34|0;BaseQRankSum=0.945;DP=65;MQRankSum=0.000;QUALapprox=194;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;ReadPosRankSum=-1.794;VarDP=63 GT:AD:DP:GQ:PL:SB 1:29,34,0:63:99:194,0,1127:11,18,14,20 +chrX 1791356 . T . . END=1791796 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,213 +chrX 1791797 . G GT, 741.01 . AS_QUALapprox=|751|0;AS_VarDP=27|44|0;BaseQRankSum=1.482;DP=74;MQRankSum=-0.754;QUALapprox=751;RAW_GT_COUNT=0,0,1;RAW_MQandDP=265825,74;ReadPosRankSum=1.043;VarDP=71 GT:AD:DP:GQ:PL:SB 1:27,44,0:71:99:751,0,1966:12,15,29,15 +chrX 1791798 . C T, 741.04 . AS_QUALapprox=|751|0;AS_VarDP=27|44|0;BaseQRankSum=-0.189;DP=74;MQRankSum=-0.754;QUALapprox=751;RAW_GT_COUNT=0,0,1;RAW_MQandDP=265825,74;ReadPosRankSum=1.132;VarDP=71 GT:AD:DP:GQ:PL:SB 1:27,44,0:71:99:751,0,1966:12,15,29,15 +chrX 1791799 . A . . END=1791940 GT:DP:GQ:MIN_DP:PL 0:73:99:73:0,1800 +chrX 1791941 . A AAAT, 70.01 . AS_QUALapprox=|80|0;AS_VarDP=30|30|0;BaseQRankSum=-1.199;DP=62;MQRankSum=0.000;QUALapprox=80;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;ReadPosRankSum=0.791;VarDP=60 GT:AD:DP:GQ:PL:SB 1:30,30,0:60:80:80,0,1289:15,15,11,19 +chrX 1791942 . A . . END=1793042 GT:DP:GQ:MIN_DP:PL 0:41:99:41:0,214 +chrX 1793043 . A G, 5.04 . AS_QUALapprox=|15|0;AS_VarDP=32|34|0;BaseQRankSum=-1.279;DP=70;MQRankSum=0.000;QUALapprox=15;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;ReadPosRankSum=1.675;VarDP=66 GT:AD:DP:GQ:PL:SB 1:32,34,0:66:15:15,0,1097:17,15,14,20 +chrX 1793044 . T . . END=1793921 GT:DP:GQ:MIN_DP:PL 0:77:46:68:0,46 +chrX 1793922 . T TA, 392.01 . AS_QUALapprox=|402|0;AS_VarDP=22|31|0;BaseQRankSum=-1.044;DP=55;MQRankSum=0.000;QUALapprox=402;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;ReadPosRankSum=0.366;VarDP=53 GT:AD:DP:GQ:PL:SB 1:22,31,0:53:99:402,0,1118:7,15,5,14 +chrX 1793923 . A . . END=1794200 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1210 +chrX 1794201 . TGATAGATA T,TGATA, 962.01 . AS_QUALapprox=|972|798|0;AS_VarDP=0|23|18|0;DP=54;QUALapprox=972;RAW_GT_COUNT=0,0,1;RAW_MQandDP=193474,54;VarDP=41 GT:AD:DP:GQ:PL:SB 1:0,23,18,0:41:99:972,0,174,997:0,0,20,21 +chrX 1794210 . G . . END=1794270 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1578 +chrX 1794271 . GTAGA G, 227.01 . AS_QUALapprox=|237|0;AS_VarDP=28|33|0;BaseQRankSum=-0.297;DP=63;MQRankSum=-0.888;QUALapprox=237;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226449,63;ReadPosRankSum=-0.721;VarDP=61 GT:AD:DP:GQ:PL:SB 1:28,33,0:61:99:237,0,1480:14,14,19,14 +chrX 1794276 . T . . END=1796036 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,155 +chrX 1796037 . G A, 76.04 . AS_QUALapprox=|86|0;AS_VarDP=39|39|0;BaseQRankSum=0.458;DP=80;MQRankSum=0.000;QUALapprox=86;RAW_GT_COUNT=0,0,1;RAW_MQandDP=288000,80;ReadPosRankSum=0.887;VarDP=78 GT:AD:DP:GQ:PL:SB 1:39,39,0:78:86:86,0,1745:16,23,22,17 +chrX 1796038 . T . . END=1796048 GT:DP:GQ:MIN_DP:PL 0:76:99:76:0,1800 +chrX 1796049 . ATG A, 180.01 . AS_QUALapprox=|190|0;AS_VarDP=37|41|0;BaseQRankSum=0.149;DP=79;MQRankSum=0.000;QUALapprox=190;RAW_GT_COUNT=0,0,1;RAW_MQandDP=284400,79;ReadPosRankSum=0.603;VarDP=78 GT:AD:DP:GQ:PL:SB 1:37,41,0:78:99:190,0,1794:13,24,22,19 +chrX 1796052 . T . . END=1796174 GT:DP:GQ:MIN_DP:PL 0:77:99:77:0,1800 +chrX 1796175 . C CGTGT, 599.01 . AS_QUALapprox=|609|0;AS_VarDP=23|37|0;BaseQRankSum=-1.284;DP=64;MQRankSum=0.000;QUALapprox=609;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;ReadPosRankSum=-0.453;VarDP=60 GT:AD:DP:GQ:PL:SB 1:23,37,0:60:99:609,0,1624:11,12,22,15 +chrX 1796176 . G . . END=1796185 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1800 +chrX 1796186 . GTA G, 575.01 . AS_QUALapprox=|585|0;AS_VarDP=24|37|0;BaseQRankSum=-0.838;DP=61;MQRankSum=0.000;QUALapprox=585;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;ReadPosRankSum=-0.236;VarDP=61 GT:AD:DP:GQ:PL:SB 1:24,37,0:61:99:585,0,1665:12,12,21,16 +chrX 1796189 . T . . END=1796197 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1800 +chrX 1796198 . A G, 506.04 . AS_QUALapprox=|516|0;AS_VarDP=23|34|0;BaseQRankSum=0.539;DP=58;MQRankSum=0.000;QUALapprox=516;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;ReadPosRankSum=0.293;VarDP=57 GT:AD:DP:GQ:PL:SB 1:23,34,0:57:99:516,0,1530:12,11,19,15 +chrX 1796199 . T . . END=1796251 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1637 +chrX 1796252 . ATG A, 205.01 . AS_QUALapprox=|215|0;AS_VarDP=23|28|0;BaseQRankSum=-0.111;DP=57;MQRankSum=0.000;QUALapprox=215;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;ReadPosRankSum=1.506;VarDP=51 GT:AD:DP:GQ:PL:SB 1:23,28,0:51:99:215,0,1194:12,11,13,15 +chrX 1796255 . T . . END=1796397 GT:DP:GQ:MIN_DP:PL 0:59:52:57:0,52 +chrX 1796398 . A . . END=1796398 GT:DP:GQ:MIN_DP:PL 0:70:0:70:0,0 +chrX 1796399 . T . . END=1796447 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,128 +chrX 1796448 . G GTGTGCA, 76.01 . AS_QUALapprox=|86|0;AS_VarDP=29|32|0;BaseQRankSum=1.819;DP=61;MQRankSum=0.000;QUALapprox=86;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;ReadPosRankSum=2.551;VarDP=61 GT:AD:DP:GQ:PL:SB 1:29,32,0:61:86:86,0,1237:13,16,13,12 +chrX 1796449 . T . . END=1796451 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1529 +chrX 1796452 . G GTATA, 111.01 . AS_QUALapprox=|121|0;AS_VarDP=29|32|0;BaseQRankSum=1.831;DP=63;MQRankSum=0.000;QUALapprox=121;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;ReadPosRankSum=2.404;VarDP=61 GT:AD:DP:GQ:PL:SB 1:29,32,0:61:99:121,0,1242:13,16,13,12 +chrX 1796453 . T . . END=1796527 GT:DP:GQ:MIN_DP:PL 0:73:99:73:0,1800 +chrX 1796528 . T C, 262.04 . AS_QUALapprox=|272|0;AS_VarDP=31|41|0;BaseQRankSum=-1.053;DP=73;MQRankSum=0.000;QUALapprox=272;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;ReadPosRankSum=-0.939;VarDP=72 GT:AD:DP:GQ:PL:SB 1:31,41,0:72:99:272,0,1284:15,16,14,27 +chrX 1796529 . C . . END=1797507 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1360 +chrX 1797508 . G A, 0.89 . AS_QUALapprox=|10|0;AS_VarDP=21|22|0;BaseQRankSum=-0.344;DP=46;MQRankSum=-0.523;QUALapprox=10;RAW_GT_COUNT=0,0,1;RAW_MQandDP=161717,46;ReadPosRankSum=-0.219;VarDP=43 GT:AD:DP:GQ:PL:SB 1:21,22,0:43:10:10,0,699:11,10,13,9 +chrX 1797509 . G . . END=1799211 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,174 +chrX 1799212 . A T, 491.04 . AS_QUALapprox=|501|0;AS_VarDP=25|40|0;BaseQRankSum=-0.024;DP=66;MQRankSum=0.000;QUALapprox=501;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;ReadPosRankSum=-0.020;VarDP=65 GT:AD:DP:GQ:PL:SB 1:25,40,0:65:99:501,0,1325:16,9,19,21 +chrX 1799213 . T . . END=1801486 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,174 +chrX 1801487 . TTATC T, 587.01 . AS_QUALapprox=|597|0;AS_VarDP=19|32|0;BaseQRankSum=-1.338;DP=56;MQRankSum=0.000;QUALapprox=597;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;ReadPosRankSum=-0.867;VarDP=51 GT:AD:DP:GQ:PL:SB 1:19,32,0:51:99:597,0,1440:11,8,13,19 +chrX 1801492 . T . . END=1803573 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,297 +chrX 1803574 . A . . END=1803575 GT:DP:GQ:MIN_DP:PL 0:51:0:51:0,0 +chrX 1803576 . CATCTAT C, 530.01 . AS_QUALapprox=|540|0;AS_VarDP=20|32|0;BaseQRankSum=-1.681;DP=52;MQRankSum=0.000;QUALapprox=540;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;ReadPosRankSum=0.830;VarDP=52 GT:AD:DP:GQ:PL:SB 1:20,32,0:52:99:540,0,1440:10,10,17,15 +chrX 1803583 . T . . END=1803585 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1677 +chrX 1803586 . CT C, 485.01 . AS_QUALapprox=|495|0;AS_VarDP=21|32|0;BaseQRankSum=-0.587;DP=53;MQRankSum=0.000;QUALapprox=495;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;ReadPosRankSum=1.865;VarDP=53 GT:AD:DP:GQ:PL:SB 1:21,32,0:53:99:495,0,1440:10,11,17,15 +chrX 1803588 . A . . END=1803592 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1682 +chrX 1803593 . TC T, 440.01 . AS_QUALapprox=|450|0;AS_VarDP=22|32|0;BaseQRankSum=-0.620;DP=54;MQRankSum=0.000;QUALapprox=450;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;ReadPosRankSum=1.801;VarDP=54 GT:AD:DP:GQ:PL:SB 1:22,32,0:54:99:450,0,1434:11,11,17,15 +chrX 1803595 . T . . END=1803877 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1407 +chrX 1803878 . A G, 695.04 . AS_QUALapprox=|705|0;AS_VarDP=21|43|0;BaseQRankSum=-1.285;DP=69;MQRankSum=0.000;QUALapprox=705;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;ReadPosRankSum=0.150;VarDP=64 GT:AD:DP:GQ:PL:SB 1:21,43,0:64:99:705,0,1425:9,12,18,25 +chrX 1803879 . A . . END=1805258 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,105 +chrX 1805259 . G A, 66.04 . AS_QUALapprox=|76|0;AS_VarDP=35|36|0;BaseQRankSum=1.273;DP=77;MQRankSum=1.042;QUALapprox=76;RAW_GT_COUNT=0,0,1;RAW_MQandDP=276516,77;ReadPosRankSum=0.443;VarDP=71 GT:AD:DP:GQ:PL:SB 1:35,36,0:71:76:76,0,1195:18,17,23,13 +chrX 1805260 . G . . END=1805588 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1800 +chrX 1805589 . C T, 290.04 . AS_QUALapprox=|300|0;AS_VarDP=29|37|0;BaseQRankSum=0.861;DP=67;MQRankSum=0.000;QUALapprox=300;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;ReadPosRankSum=-0.433;VarDP=66 GT:AD:DP:GQ:PL:SB 1:29,37,0:66:99:300,0,1222:14,15,20,17 +chrX 1805590 . T . . END=1807682 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,689 +chrX 1807683 . C G, 35.04 . AS_QUALapprox=|45|0;AS_VarDP=23|23|0;BaseQRankSum=2.613;DP=46;MQRankSum=0.000;QUALapprox=45;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;ReadPosRankSum=0.055;VarDP=46 GT:AD:DP:GQ:PL:SB 1:23,23,0:46:45:45,0,1004:11,12,17,6 +chrX 1807684 . T . . END=1807690 GT:DP:GQ:MIN_DP:PL 0:43:99:43:0,1335 +chrX 1807691 . CG C, 199.01 . AS_QUALapprox=|209|0;AS_VarDP=20|25|0;BaseQRankSum=2.085;DP=45;MQRankSum=0.000;QUALapprox=209;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162000,45;ReadPosRankSum=-0.663;VarDP=45 GT:AD:DP:GQ:PL:SB 1:20,25,0:45:99:209,0,1065:11,9,18,7 +chrX 1807693 . G . . END=1807771 GT:DP:GQ:MIN_DP:PL 0:39:99:39:0,1191 +chrX 1807772 . G A, 289.04 . AS_QUALapprox=|299|0;AS_VarDP=19|27|0;BaseQRankSum=0.388;DP=46;MQRankSum=0.000;QUALapprox=299;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;ReadPosRankSum=-0.257;VarDP=46 GT:AD:DP:GQ:PL:SB 1:19,27,0:46:99:299,0,889:8,11,18,9 +chrX 1807773 . T . . END=1807877 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1533 +chrX 1807878 . A G, 162.04 . AS_QUALapprox=|172|0;AS_VarDP=24|32|0;BaseQRankSum=-1.064;DP=60;MQRankSum=0.000;QUALapprox=172;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;ReadPosRankSum=-0.149;VarDP=56 GT:AD:DP:GQ:PL:SB 1:24,32,0:56:99:172,0,936:12,12,15,17 +chrX 1807879 . G . . END=1807912 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1578 +chrX 1807913 . G A, 478.04 . AS_QUALapprox=|488|0;AS_VarDP=24|37|0;BaseQRankSum=1.473;DP=62;MQRankSum=-0.772;QUALapprox=488;RAW_GT_COUNT=0,0,1;RAW_MQandDP=221200,62;ReadPosRankSum=-0.960;VarDP=61 GT:AD:DP:GQ:PL:SB 1:24,37,0:61:99:488,0,1241:13,11,18,19 +chrX 1807914 . T . . END=1809567 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1375 +chrX 1809568 . CAT C, 139.01 . AS_QUALapprox=|149|0;AS_VarDP=14|18|0;BaseQRankSum=-1.080;DP=50;MQRankSum=1.197;QUALapprox=149;RAW_GT_COUNT=0,0,1;RAW_MQandDP=178704,50;ReadPosRankSum=0.799;VarDP=32 GT:AD:DP:GQ:PL:SB 1:14,18,0:32:99:149,0,588:8,6,3,15 +chrX 1809571 . A . . END=1810648 GT:DP:GQ:MIN_DP:PL 0:60:75:60:0,75 +chrX 1810649 . C T, 356.04 . AS_QUALapprox=|366|0;AS_VarDP=24|33|0;BaseQRankSum=1.373;DP=59;MQRankSum=0.000;QUALapprox=366;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;ReadPosRankSum=-1.116;VarDP=57 GT:AD:DP:GQ:PL:SB 1:24,33,0:57:99:366,0,1105:7,17,18,15 +chrX 1810650 . G . . END=1810711 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1800 +chrX 1810712 . T C, 252.04 . AS_QUALapprox=|262|0;AS_VarDP=25|30|0;BaseQRankSum=2.376;DP=59;MQRankSum=1.132;QUALapprox=262;RAW_GT_COUNT=0,0,1;RAW_MQandDP=210649,59;ReadPosRankSum=1.581;VarDP=55 GT:AD:DP:GQ:PL:SB 1:25,30,0:55:99:262,0,1009:6,19,10,20 +chrX 1810713 . G . . END=1811274 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,1150 +chrX 1811275 . C T, 120.04 . AS_QUALapprox=|130|0;AS_VarDP=18|21|0;BaseQRankSum=0.755;DP=39;MQRankSum=1.584;QUALapprox=130;RAW_GT_COUNT=0,0,1;RAW_MQandDP=137825,39;ReadPosRankSum=-0.423;VarDP=39 GT:AD:DP:GQ:PL:SB 1:18,21,0:39:99:130,0,680:5,13,12,9 +chrX 1811276 . A . . END=1812519 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1019 +chrX 1812520 . G A, 53.04 . AS_QUALapprox=|63|0;AS_VarDP=30|34|0;BaseQRankSum=-1.848;DP=67;MQRankSum=0.000;QUALapprox=63;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;ReadPosRankSum=0.720;VarDP=64 GT:AD:DP:GQ:PL:SB 1:30,34,0:64:63:63,0,1085:19,11,16,18 +chrX 1812521 . A . . END=1813076 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1359 +chrX 1813077 . G A, 230.04 . AS_QUALapprox=|240|0;AS_VarDP=42|45|0;BaseQRankSum=2.945;DP=92;MQRankSum=-1.358;QUALapprox=240;RAW_GT_COUNT=0,0,1;RAW_MQandDP=327200,92;ReadPosRankSum=0.178;VarDP=87 GT:AD:DP:GQ:PL:SB 1:42,45,0:87:99:240,0,1464:27,15,32,13 +chrX 1813078 . G . . END=1813118 GT:DP:GQ:MIN_DP:PL 0:85:99:85:0,1800 +chrX 1813119 . T C, 180.04 . AS_QUALapprox=|190|0;AS_VarDP=40|44|0;BaseQRankSum=0.535;DP=86;MQRankSum=-0.930;QUALapprox=190;RAW_GT_COUNT=0,0,1;RAW_MQandDP=307600,86;ReadPosRankSum=-0.287;VarDP=84 GT:AD:DP:GQ:PL:SB 1:40,44,0:84:99:190,0,1399:25,15,32,12 +chrX 1813120 . G . . END=1813220 GT:DP:GQ:MIN_DP:PL 0:82:99:82:0,1800 +chrX 1813221 . C T, 153.04 . AS_QUALapprox=|163|0;AS_VarDP=32|31|0;BaseQRankSum=3.537;DP=66;MQRankSum=1.426;QUALapprox=163;RAW_GT_COUNT=0,0,1;RAW_MQandDP=231613,66;ReadPosRankSum=1.293;VarDP=63 GT:AD:DP:GQ:PL:SB 1:32,31,0:63:99:163,0,1022:13,19,9,22 +chrX 1813222 . G . . END=1815664 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,328 +chrX 1815665 . A ATATTT, 873.01 . AS_QUALapprox=|883|0;AS_VarDP=8|28|0;BaseQRankSum=-1.505;DP=53;MQRankSum=-0.468;QUALapprox=883;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190225,53;ReadPosRankSum=0.362;VarDP=36 GT:AD:DP:GQ:PL:SB 1:8,28,0:36:99:883,0,1234:6,2,21,7 +chrX 1815666 . T . . END=1817114 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,1085 +chrX 1817115 . C CACAACAGTAATATGATACTACCGCCGCATGGGAGCAGTAATAACA, 358.01 . AS_QUALapprox=|368|0;AS_VarDP=6|16|0;BaseQRankSum=0.811;DP=43;MQRankSum=-1.456;QUALapprox=368;RAW_GT_COUNT=0,0,1;RAW_MQandDP=132678,43;ReadPosRankSum=-1.763;VarDP=22 GT:AD:DP:GQ:PL:SB 1:6,16,0:22:99:368,0,625:4,2,7,9 +chrX 1817116 . A . . END=1818166 GT:DP:GQ:MIN_DP:PL 0:39:99:39:0,387 +chrX 1818167 . T TGA, 699.01 . AS_QUALapprox=|709|0;AS_VarDP=0|16|0;DP=21;QUALapprox=709;RAW_GT_COUNT=0,0,1;RAW_MQandDP=42996,21;VarDP=16 GT:AD:DP:GQ:PL:SB 1:0,16,0:16:99:709,0,709:0,0,8,8 +chrX 1818168 . G . . END=1823507 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,547 +chrX 1823508 . G A, 73.04 . AS_QUALapprox=|83|0;AS_VarDP=25|26|0;BaseQRankSum=0.994;DP=54;MQRankSum=0.000;QUALapprox=83;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;ReadPosRankSum=-0.226;VarDP=51 GT:AD:DP:GQ:PL:SB 1:25,26,0:51:83:83,0,881:15,10,10,16 +chrX 1823509 . A . . END=1825336 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,819 +chrX 1825337 . C T, 239.04 . AS_QUALapprox=|249|0;AS_VarDP=13|20|0;BaseQRankSum=0.650;DP=36;MQRankSum=1.302;QUALapprox=249;RAW_GT_COUNT=0,0,1;RAW_MQandDP=127936,36;ReadPosRankSum=-0.904;VarDP=33 GT:AD:DP:GQ:PL:SB 1:13,20,0:33:99:249,0,635:5,8,10,10 +chrX 1825338 . C . . END=1833436 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,406 +chrX 1833437 . C T, 253.04 . AS_QUALapprox=|263|0;AS_VarDP=19|26|0;BaseQRankSum=1.307;DP=45;MQRankSum=0.000;QUALapprox=263;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162000,45;ReadPosRankSum=0.713;VarDP=45 GT:AD:DP:GQ:PL:SB 1:19,26,0:45:99:263,0,884:8,11,12,14 +chrX 1833438 . G . . END=1834390 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1383 +chrX 1834391 . A G, 114.04 . AS_QUALapprox=|124|0;AS_VarDP=18|23|0;BaseQRankSum=-2.062;DP=43;MQRankSum=0.000;QUALapprox=124;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154800,43;ReadPosRankSum=-0.552;VarDP=41 GT:AD:DP:GQ:PL:SB 1:18,23,0:41:99:124,0,749:13,5,10,13 +chrX 1834392 . A . . END=1836006 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,450 +chrX 1836007 . ATTC A, 125.01 . AS_QUALapprox=|135|0;AS_VarDP=22|25|0;BaseQRankSum=-1.257;DP=53;MQRankSum=0.000;QUALapprox=135;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;ReadPosRankSum=-1.546;VarDP=47 GT:AD:DP:GQ:PL:SB 1:22,25,0:47:99:135,0,1125:12,10,15,10 +chrX 1836011 . T . . END=1836023 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1529 +chrX 1836024 . A C, 110.04 . AS_QUALapprox=|120|0;AS_VarDP=26|29|0;BaseQRankSum=0.294;DP=60;MQRankSum=0.000;QUALapprox=120;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;ReadPosRankSum=-1.181;VarDP=55 GT:AD:DP:GQ:PL:SB 1:26,29,0:55:99:120,0,946:15,11,17,12 +chrX 1836025 . C . . END=1836557 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,253 +chrX 1836558 . C T, 135.04 . AS_QUALapprox=|145|0;AS_VarDP=23|26|0;BaseQRankSum=2.142;DP=51;MQRankSum=0.000;QUALapprox=145;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;ReadPosRankSum=-1.033;VarDP=49 GT:AD:DP:GQ:PL:SB 1:23,26,0:49:99:145,0,846:7,16,9,17 +chrX 1836559 . T . . END=1836747 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1265 +chrX 1836748 . T . . END=1836752 GT:DP:GQ:MIN_DP:PL 0:53:16:52:0,16 +chrX 1836753 . A . . END=1839422 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,109 +chrX 1839423 . C T, 228.04 . AS_QUALapprox=|238|0;AS_VarDP=25|33|0;BaseQRankSum=-0.216;DP=61;MQRankSum=-1.514;QUALapprox=238;RAW_GT_COUNT=0,0,1;RAW_MQandDP=218105,61;ReadPosRankSum=-0.110;VarDP=58 GT:AD:DP:GQ:PL:SB 1:25,33,0:58:99:238,0,996:17,8,18,15 +chrX 1839424 . G . . END=1839459 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,1677 +chrX 1839460 . T C, 155.04 . AS_QUALapprox=|165|0;AS_VarDP=24|29|0;BaseQRankSum=-0.122;DP=54;MQRankSum=-1.272;QUALapprox=165;RAW_GT_COUNT=0,0,1;RAW_MQandDP=193141,54;ReadPosRankSum=-0.241;VarDP=53 GT:AD:DP:GQ:PL:SB 1:24,29,0:53:99:165,0,968:17,7,14,15 +chrX 1839461 . A . . END=1840684 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1417 +chrX 1840685 . A ATGAT, 141.01 . AS_QUALapprox=|151|0;AS_VarDP=29|32|0;BaseQRankSum=0.413;DP=68;MQRankSum=0.000;QUALapprox=151;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;ReadPosRankSum=0.614;VarDP=61 GT:AD:DP:GQ:PL:SB 1:29,32,0:61:99:151,0,1376:17,12,18,14 +chrX 1840686 . T . . END=1840864 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1795 +chrX 1840865 . CTTTT C, 456.01 . AS_QUALapprox=|466|0;AS_VarDP=15|25|0;BaseQRankSum=1.887;DP=58;MQRankSum=0.444;QUALapprox=466;RAW_GT_COUNT=0,0,1;RAW_MQandDP=207989,58;ReadPosRankSum=-1.216;VarDP=40 GT:AD:DP:GQ:PL:SB 1:15,25,0:40:99:466,0,1127:3,12,13,12 +chrX 1840870 . T . . END=1841053 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,1240 +chrX 1841054 . C G, 25.04 . AS_QUALapprox=|35|0;AS_VarDP=25|26|0;BaseQRankSum=0.061;DP=53;MQRankSum=0.000;QUALapprox=35;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;ReadPosRankSum=-0.264;VarDP=51 GT:AD:DP:GQ:PL:SB 1:25,26,0:51:35:35,0,884:11,14,8,18 +chrX 1841055 . T . . END=1841559 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1206 +chrX 1841560 . C . . END=1841563 GT:DP:GQ:MIN_DP:PL 0:47:0:47:0,0 +chrX 1841564 . A . . END=1842223 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,104 +chrX 1842224 . G A, 25.04 . AS_QUALapprox=|35|0;AS_VarDP=23|24|0;BaseQRankSum=0.090;DP=50;MQRankSum=0.000;QUALapprox=35;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;ReadPosRankSum=0.106;VarDP=47 GT:AD:DP:GQ:PL:SB 1:23,24,0:47:35:35,0,784:15,8,9,15 +chrX 1842225 . C . . END=1842381 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1473 +chrX 1842382 . C G, 38.04 . AS_QUALapprox=|48|0;AS_VarDP=27|27|0;BaseQRankSum=1.516;DP=55;MQRankSum=1.037;QUALapprox=48;RAW_GT_COUNT=0,0,1;RAW_MQandDP=196704,55;ReadPosRankSum=-0.208;VarDP=54 GT:AD:DP:GQ:PL:SB 1:27,27,0:54:48:48,0,886:13,14,16,11 +chrX 1842383 . G . . END=1842440 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,1518 +chrX 1842441 . G A, 50.04 . AS_QUALapprox=|60|0;AS_VarDP=23|26|0;BaseQRankSum=-0.924;DP=52;MQRankSum=0.000;QUALapprox=60;RAW_GT_COUNT=0,0,1;RAW_MQandDP=184329,52;ReadPosRankSum=1.954;VarDP=49 GT:AD:DP:GQ:PL:SB 1:23,26,0:49:60:60,0,828:12,11,17,9 +chrX 1842442 . G . . END=1845110 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,324 +chrX 1845111 . CA C, 0.02 . AS_QUALapprox=|3|0;AS_VarDP=21|19|0;BaseQRankSum=-2.078;DP=65;MQRankSum=0.000;QUALapprox=3;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;ReadPosRankSum=0.482;VarDP=40 GT:AD:DP:GQ:PL:SB 1:21,19,0:40:3:3,0,407:11,10,8,11 +chrX 1845113 . A . . END=1845180 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1800 +chrX 1845181 . T C, 139.04 . AS_QUALapprox=|149|0;AS_VarDP=32|34|0;BaseQRankSum=2.102;DP=69;MQRankSum=0.000;QUALapprox=149;RAW_GT_COUNT=0,0,1;RAW_MQandDP=246025,69;ReadPosRankSum=0.661;VarDP=66 GT:AD:DP:GQ:PL:SB 1:32,34,0:66:99:149,0,1171:14,18,17,17 +chrX 1845182 . T . . END=1845707 GT:DP:GQ:MIN_DP:PL 0:70:64:57:0,64 +chrX 1845708 . C CTTTT, 63.01 . AS_QUALapprox=|73|0;AS_VarDP=10|20|0;BaseQRankSum=1.620;DP=63;MQRankSum=-1.669;QUALapprox=73;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208578,63;ReadPosRankSum=0.880;VarDP=30 GT:AD:DP:GQ:PL:SB 1:10,20,0:30:73:73,0,481:0,10,19,1 +chrX 1845709 . T . . END=1845812 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,495 +chrX 1845813 . G A, 76.04 . AS_QUALapprox=|86|0;AS_VarDP=18|18|0;BaseQRankSum=2.117;DP=38;MQRankSum=-2.059;QUALapprox=86;RAW_GT_COUNT=0,0,1;RAW_MQandDP=134100,38;ReadPosRankSum=0.475;VarDP=36 GT:AD:DP:GQ:PL:SB 1:18,18,0:36:86:86,0,626:7,11,9,9 +chrX 1845814 . G . . END=1849153 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,109 +chrX 1849154 . A G, 171.04 . AS_QUALapprox=|181|0;AS_VarDP=29|37|0;BaseQRankSum=-1.762;DP=68;MQRankSum=0.000;QUALapprox=181;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;ReadPosRankSum=-0.472;VarDP=66 GT:AD:DP:GQ:PL:SB 1:29,37,0:66:99:181,0,1148:8,21,14,23 +chrX 1849155 . G . . END=1849425 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1484 +chrX 1849426 . C T, 5.04 . AS_QUALapprox=|15|0;AS_VarDP=26|25|0;BaseQRankSum=1.626;DP=54;MQRankSum=1.020;QUALapprox=15;RAW_GT_COUNT=0,0,1;RAW_MQandDP=193825,54;ReadPosRankSum=-1.970;VarDP=51 GT:AD:DP:GQ:PL:SB 1:26,25,0:51:15:15,0,838:13,13,6,19 +chrX 1849427 . G . . END=1850439 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,946 +chrX 1850440 . T TTTA, 35.01 . AS_QUALapprox=|45|0;AS_VarDP=19|20|0;BaseQRankSum=-2.249;DP=63;MQRankSum=0.000;QUALapprox=45;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;ReadPosRankSum=0.000;VarDP=39 GT:AD:DP:GQ:PL:SB 1:19,20,0:39:45:45,0,876:11,8,13,7 +chrX 1850441 . T . . END=1850946 GT:DP:GQ:MIN_DP:PL 0:71:64:71:0,64 +chrX 1850947 . C . . END=1850947 GT:DP:GQ:MIN_DP:PL 0:69:2:69:0,2 +chrX 1850948 . A . . END=1853417 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,119 +chrX 1853418 . A G, 29.04 . AS_QUALapprox=|39|0;AS_VarDP=28|30|0;BaseQRankSum=-0.786;DP=61;MQRankSum=0.074;QUALapprox=39;RAW_GT_COUNT=0,0,1;RAW_MQandDP=217350,61;ReadPosRankSum=-0.584;VarDP=58 GT:AD:DP:GQ:PL:SB 1:28,30,0:58:39:39,0,963:14,14,20,10 +chrX 1853419 . G . . END=1853838 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,860 +chrX 1853839 . AAAGGAAGG A, 528.01 . AS_QUALapprox=|538|0;AS_VarDP=16|28|0;BaseQRankSum=0.445;DP=53;MQRankSum=0.000;QUALapprox=538;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;ReadPosRankSum=-0.280;VarDP=44 GT:AD:DP:GQ:PL:SB 1:16,28,0:44:99:538,0,1217:9,7,17,11 +chrX 1853848 . A . . END=1854542 GT:DP:GQ:MIN_DP:PL 0:75:99:75:0,1520 +chrX 1854543 . AT A,ATT, 558.01 . AS_QUALapprox=|0|568|0;AS_VarDP=11|2|35|0;BaseQRankSum=1.688;DP=62;MQRankSum=0.000;QUALapprox=568;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;ReadPosRankSum=0.589;VarDP=48 GT:AD:DP:GQ:PL:SB 2:11,2,35,0:48:99:568,1199,0,1063:6,5,17,20 +chrX 1854545 . T . . END=1854641 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1458 +chrX 1854642 . C T, 273.04 . AS_QUALapprox=|283|0;AS_VarDP=20|29|0;BaseQRankSum=-0.619;DP=54;MQRankSum=0.326;QUALapprox=283;RAW_GT_COUNT=0,0,1;RAW_MQandDP=193706,54;ReadPosRankSum=0.855;VarDP=49 GT:AD:DP:GQ:PL:SB 1:20,29,0:49:99:283,0,943:13,7,6,23 +chrX 1854643 . G . . END=1855889 GT:DP:GQ:MIN_DP:PL 0:30:35:1:0,35 +chrX 1855890 . G . . END=1856088 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1856089 . G . . END=1857180 GT:DP:GQ:MIN_DP:PL 0:30:35:1:0,35 +chrX 1857181 . G C, 94.04 . AS_QUALapprox=|104|0;AS_VarDP=34|38|0;BaseQRankSum=-0.360;DP=73;MQRankSum=0.119;QUALapprox=104;RAW_GT_COUNT=0,0,1;RAW_MQandDP=260741,73;ReadPosRankSum=0.750;VarDP=72 GT:AD:DP:GQ:PL:SB 1:34,38,0:72:99:104,0,1215:22,12,21,17 +chrX 1857182 . A . . END=1859051 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,849 +chrX 1859052 . C CA, 1074.01 . AS_QUALapprox=|1084|0;AS_VarDP=1|51|0;BaseQRankSum=-0.326;DP=66;MQRankSum=0.000;QUALapprox=1084;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;ReadPosRankSum=-1.369;VarDP=52 GT:AD:DP:GQ:PL:SB 1:1,51,0:52:99:1084,0,1107:1,0,27,24 +chrX 1859053 . A . . END=1860375 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1757 +chrX 1860376 . C T, 2251.04 . AS_QUALapprox=|2261|0;AS_VarDP=0|70|0;DP=73;QUALapprox=2261;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,70,0:70:99:2261,0,2261:0,0,39,31 +chrX 1860377 . G . . END=1860411 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1800 +chrX 1860412 . A G, 2211.04 . AS_QUALapprox=|2221|0;AS_VarDP=0|70|0;DP=73;QUALapprox=2221;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,70,0:70:99:2221,0,2221:0,0,40,30 +chrX 1860413 . T . . END=1860551 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1800 +chrX 1860552 . T C, 2852.04 . AS_QUALapprox=|2862|0;AS_VarDP=2|67|0;BaseQRankSum=2.618;DP=70;MQRankSum=-0.086;QUALapprox=2862;RAW_GT_COUNT=0,0,1;RAW_MQandDP=251425,70;ReadPosRankSum=0.519;VarDP=69 GT:AD:DP:GQ:PL:SB 1:2,67,0:69:99:2862,0,2952:1,1,32,35 +chrX 1860553 . G . . END=1860557 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1800 +chrX 1860558 . A G, 2896.04 . AS_QUALapprox=|2906|0;AS_VarDP=2|68|0;BaseQRankSum=1.986;DP=71;MQRankSum=-0.086;QUALapprox=2906;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255025,71;ReadPosRankSum=0.340;VarDP=70 GT:AD:DP:GQ:PL:SB 1:2,68,0:70:99:2906,0,2996:1,1,32,36 +chrX 1860559 . G . . END=1860605 GT:DP:GQ:MIN_DP:PL 0:76:99:76:0,1800 +chrX 1860606 . T C, 3343.04 . AS_QUALapprox=|3353|0;AS_VarDP=1|78|0;BaseQRankSum=-0.609;DP=81;MQRankSum=0.000;QUALapprox=3353;RAW_GT_COUNT=0,0,1;RAW_MQandDP=291600,81;ReadPosRankSum=-1.557;VarDP=79 GT:AD:DP:GQ:PL:SB 1:1,78,0:79:99:3353,0,3398:0,1,37,41 +chrX 1860607 . G . . END=1860607 GT:DP:GQ:MIN_DP:PL 0:74:99:74:0,1800 +chrX 1860608 . C T, 3343.04 . AS_QUALapprox=|3353|0;AS_VarDP=1|78|0;BaseQRankSum=-0.506;DP=80;MQRankSum=0.000;QUALapprox=3353;RAW_GT_COUNT=0,0,1;RAW_MQandDP=288000,80;ReadPosRankSum=-1.525;VarDP=79 GT:AD:DP:GQ:PL:SB 1:1,78,0:79:99:3353,0,3398:0,1,37,41 +chrX 1860609 . T . . END=1860627 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1800 +chrX 1860628 . T C, 3037.04 . AS_QUALapprox=|3047|0;AS_VarDP=1|71|0;BaseQRankSum=-0.599;DP=75;MQRankSum=0.000;QUALapprox=3047;RAW_GT_COUNT=0,0,1;RAW_MQandDP=270000,75;ReadPosRankSum=-0.149;VarDP=72 GT:AD:DP:GQ:PL:SB 1:1,71,0:72:99:3047,0,3092:0,1,33,38 +chrX 1860629 . G . . END=1860875 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1800 +chrX 1860876 . G A, 2108.04 . AS_QUALapprox=|2118|0;AS_VarDP=0|65|0;DP=71;QUALapprox=2118;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,65,0:65:99:2118,0,2118:0,0,36,29 +chrX 1860877 . A . . END=1860901 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1800 +chrX 1860902 . C T, 2392.04 . AS_QUALapprox=|2402|0;AS_VarDP=0|72|0;DP=75;QUALapprox=2402;RAW_GT_COUNT=0,0,1;RAW_MQandDP=270000,75;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,72,0:72:99:2402,0,2402:0,0,37,35 +chrX 1860903 . G . . END=1862649 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,744 +chrX 1862650 . AAAGGAAGGAAGGAAGG A, 263.01 . AS_QUALapprox=|273|0;AS_VarDP=3|9|0;BaseQRankSum=-0.319;DP=27;MQRankSum=0.000;QUALapprox=273;RAW_GT_COUNT=0,0,1;RAW_MQandDP=96964,27;ReadPosRankSum=0.618;VarDP=12 GT:AD:DP:GQ:PL:SB 1:3,9,0:12:99:273,0,408:3,0,8,1 +chrX 1862667 . A . . END=1862760 GT:DP:GQ:MIN_DP:PL 0:19:99:19:0,397 +chrX 1862761 . AAAGG A, 281.01 . AS_QUALapprox=|291|0;AS_VarDP=16|22|0;BaseQRankSum=0.966;DP=42;MQRankSum=-0.800;QUALapprox=291;RAW_GT_COUNT=0,0,1;RAW_MQandDP=150100,42;ReadPosRankSum=0.774;VarDP=38 GT:AD:DP:GQ:PL:SB 1:16,22,0:38:99:291,0,990:8,8,11,11 +chrX 1862766 . A . . END=1862986 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,99 +chrX 1862987 . A . . END=1862987 GT:DP:GQ:MIN_DP:PL 0:43:10:43:0,10 +chrX 1862988 . A . . END=1863495 GT:DP:GQ:MIN_DP:PL 0:56:50:40:0,50 +chrX 1863496 . T G, 51.04 . AS_QUALapprox=|61|0;AS_VarDP=28|30|0;BaseQRankSum=-0.162;DP=61;MQRankSum=0.000;QUALapprox=61;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;ReadPosRankSum=1.759;VarDP=58 GT:AD:DP:GQ:PL:SB 1:28,30,0:58:61:61,0,973:12,16,14,16 +chrX 1863497 . T . . END=1865161 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1703 +chrX 1865162 . G A, 2366.04 . AS_QUALapprox=|2376|0;AS_VarDP=0|72|0;DP=75;QUALapprox=2376;RAW_GT_COUNT=0,0,1;RAW_MQandDP=270000,75;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,72,0:72:99:2376,0,2376:0,0,35,37 +chrX 1865163 . G . . END=1865568 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1597 +chrX 1865569 . C G, 64.04 . AS_QUALapprox=|74|0;AS_VarDP=30|34|0;BaseQRankSum=-1.439;DP=64;MQRankSum=0.000;QUALapprox=74;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;ReadPosRankSum=0.518;VarDP=64 GT:AD:DP:GQ:PL:SB 1:30,34,0:64:74:74,0,1086:12,18,16,18 +chrX 1865570 . T . . END=1866301 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1266 +chrX 1866302 . C T, 70.04 . AS_QUALapprox=|80|0;AS_VarDP=19|21|0;BaseQRankSum=0.712;DP=40;MQRankSum=-0.901;QUALapprox=80;RAW_GT_COUNT=0,0,1;RAW_MQandDP=142704,40;ReadPosRankSum=-0.448;VarDP=40 GT:AD:DP:GQ:PL:SB 1:19,21,0:40:80:80,0,720:11,8,14,7 +chrX 1866303 . G . . END=1866494 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1170 +chrX 1866495 . CT C,CTT, 270.01 . AS_QUALapprox=|280|161|0;AS_VarDP=3|21|19|0;BaseQRankSum=0.295;DP=56;MQRankSum=0.000;QUALapprox=280;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;ReadPosRankSum=0.220;VarDP=43 GT:AD:DP:GQ:PL:SB 1:3,21,19,0:43:99:280,0,119,569:2,1,27,13 +chrX 1866497 . T . . END=1867790 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,103 +chrX 1867791 . G A, 673.04 . AS_QUALapprox=|683|0;AS_VarDP=26|50|0;BaseQRankSum=-0.964;DP=80;MQRankSum=-0.693;QUALapprox=683;RAW_GT_COUNT=0,0,1;RAW_MQandDP=287425,80;ReadPosRankSum=-0.088;VarDP=76 GT:AD:DP:GQ:PL:SB 1:26,50,0:76:99:683,0,1537:15,11,23,27 +chrX 1867792 . C . . END=1867902 GT:DP:GQ:MIN_DP:PL 0:73:99:73:0,1800 +chrX 1867903 . GA G, 244.01 . AS_QUALapprox=|254|0;AS_VarDP=26|34|0;BaseQRankSum=-0.140;DP=70;MQRankSum=-0.841;QUALapprox=254;RAW_GT_COUNT=0,0,1;RAW_MQandDP=250000,70;ReadPosRankSum=0.918;VarDP=60 GT:AD:DP:GQ:PL:SB 1:26,34,0:60:99:254,0,1023:12,14,17,17 +chrX 1867905 . A . . END=1868810 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1583 +chrX 1868811 . A . . END=1868811 GT:DP:GQ:MIN_DP:PL 0:72:15:72:0,15 +chrX 1868812 . T . . END=1869883 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,844 +chrX 1869884 . C A, 269.04 . AS_QUALapprox=|279|0;AS_VarDP=30|39|0;BaseQRankSum=-0.795;DP=72;MQRankSum=0.000;QUALapprox=279;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;ReadPosRankSum=1.005;VarDP=69 GT:AD:DP:GQ:PL:SB 1:30,39,0:69:99:279,0,1254:12,18,20,19 +chrX 1869885 . A . . END=1870092 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1499 +chrX 1870093 . G A, 264.04 . AS_QUALapprox=|274|0;AS_VarDP=27|34|0;BaseQRankSum=1.710;DP=61;MQRankSum=0.000;QUALapprox=274;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;ReadPosRankSum=-0.567;VarDP=61 GT:AD:DP:GQ:PL:SB 1:27,34,0:61:99:274,0,1172:15,12,21,13 +chrX 1870094 . T . . END=1871075 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1697 +chrX 1871076 . CT C, 85.01 . AS_QUALapprox=|95|0;AS_VarDP=21|24|0;BaseQRankSum=-0.486;DP=61;MQRankSum=0.000;QUALapprox=95;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219136,61;ReadPosRankSum=-0.763;VarDP=45 GT:AD:DP:GQ:PL:SB 1:21,24,0:45:95:95,0,558:10,11,8,16 +chrX 1871078 . T . . END=1871510 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1359 +chrX 1871511 . G A, 192.04 . AS_QUALapprox=|202|0;AS_VarDP=33|38|0;BaseQRankSum=1.142;DP=73;MQRankSum=0.000;QUALapprox=202;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;ReadPosRankSum=1.430;VarDP=71 GT:AD:DP:GQ:PL:SB 1:33,38,0:71:99:202,0,1234:20,13,16,22 +chrX 1871512 . A . . END=1873151 GT:DP:GQ:MIN_DP:PL 0:64:53:64:0,53 +chrX 1873152 . G A, 95.04 . AS_QUALapprox=|105|0;AS_VarDP=34|35|0;BaseQRankSum=1.253;DP=73;MQRankSum=0.000;QUALapprox=105;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;ReadPosRankSum=1.441;VarDP=69 GT:AD:DP:GQ:PL:SB 1:34,35,0:69:99:105,0,1136:18,16,18,17 +chrX 1873153 . C . . END=1873475 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1672 +chrX 1873476 . A G, 44.04 . AS_QUALapprox=|54|0;AS_VarDP=23|27|0;BaseQRankSum=-2.083;DP=54;MQRankSum=0.172;QUALapprox=54;RAW_GT_COUNT=0,0,1;RAW_MQandDP=192529,54;ReadPosRankSum=-0.837;VarDP=50 GT:AD:DP:GQ:PL:SB 1:23,27,0:50:54:54,0,833:10,13,13,14 +chrX 1873477 . G . . END=1873710 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1174 +chrX 1873711 . TCTCTCCTTTCTCAGTCTCCTTTCTCTCTCTCTTTCC T, 311.01 . AS_QUALapprox=|321|0;AS_VarDP=0|7|0;DP=41;QUALapprox=321;RAW_GT_COUNT=0,0,1;RAW_MQandDP=143730,41;VarDP=7 GT:AD:DP:GQ:PL:SB 1:0,7,0:7:99:321,0,321:0,0,2,5 +chrX 1873748 . C . . END=1874674 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,358 +chrX 1874675 . CTTTTT C,CTTTT, 5.96 . AS_QUALapprox=|0|16|0;AS_VarDP=4|11|5|0;BaseQRankSum=-1.355;DP=65;MQRankSum=0.000;QUALapprox=16;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219035,65;ReadPosRankSum=0.236;VarDP=20 GT:AD:DP:GQ:PL:SB 2:4,11,5,0:20:16:16,451,0,495:3,1,3,13 +chrX 1874681 . T . . END=1876769 GT:DP:GQ:MIN_DP:PL 0:57:35:55:0,35 +chrX 1876770 . T C, 1676.04 . AS_QUALapprox=|1686|0;AS_VarDP=0|51|0;DP=56;QUALapprox=1686;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=51 GT:AD:DP:GQ:PL:SB 1:0,51,0:51:99:1686,0,1686:0,0,24,27 +chrX 1876771 . G . . END=1876833 GT:DP:GQ:MIN_DP:PL 0:44:99:44:0,1275 +chrX 1876834 . A ATT, 33.01 . AS_QUALapprox=|43|0;AS_VarDP=16|17|0;BaseQRankSum=0.328;DP=42;MQRankSum=0.000;QUALapprox=43;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151200,42;ReadPosRankSum=1.315;VarDP=33 GT:AD:DP:GQ:PL:SB 1:16,17,0:33:43:43,0,743:8,8,8,9 +chrX 1876835 . T . . END=1877360 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,204 +chrX 1877361 . C A, 515.04 . AS_QUALapprox=|525|0;AS_VarDP=31|47|0;BaseQRankSum=-0.453;DP=80;MQRankSum=0.000;QUALapprox=525;RAW_GT_COUNT=0,0,1;RAW_MQandDP=285076,80;ReadPosRankSum=-0.230;VarDP=78 GT:AD:DP:GQ:PL:SB 1:31,47,0:78:99:525,0,1512:14,17,26,21 +chrX 1877362 . C . . END=1877614 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1760 +chrX 1877615 . T C, 699.04 . AS_QUALapprox=|709|0;AS_VarDP=27|42|0;BaseQRankSum=1.372;DP=70;MQRankSum=-0.772;QUALapprox=709;RAW_GT_COUNT=0,0,1;RAW_MQandDP=250609,70;ReadPosRankSum=-0.143;VarDP=69 GT:AD:DP:GQ:PL:SB 1:27,42,0:69:99:709,0,1868:12,15,18,24 +chrX 1877616 . C . . END=1877621 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1800 +chrX 1877622 . G A, 641.04 . AS_QUALapprox=|651|0;AS_VarDP=28|41|0;BaseQRankSum=2.594;DP=71;MQRankSum=-0.797;QUALapprox=651;RAW_GT_COUNT=0,0,1;RAW_MQandDP=254209,71;ReadPosRankSum=1.321;VarDP=69 GT:AD:DP:GQ:PL:SB 1:28,41,0:69:99:651,0,1835:12,16,17,24 +chrX 1877623 . C . . END=1877752 GT:DP:GQ:MIN_DP:PL 0:51:40:50:0,40 +chrX 1877753 . ATT A, 0.01 . AS_QUALapprox=|4|0;AS_VarDP=21|21|0;BaseQRankSum=-0.736;DP=57;MQRankSum=0.000;QUALapprox=4;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;ReadPosRankSum=-0.144;VarDP=42 GT:AD:DP:GQ:PL:SB 1:21,21,0:42:4:4,0,726:9,12,10,11 +chrX 1877756 . T . . END=1877965 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1342 +chrX 1877966 . T C, 413.04 . AS_QUALapprox=|423|0;AS_VarDP=25|36|0;BaseQRankSum=2.035;DP=63;MQRankSum=0.000;QUALapprox=423;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;ReadPosRankSum=-1.694;VarDP=61 GT:AD:DP:GQ:PL:SB 1:25,36,0:61:99:423,0,1221:14,11,17,19 +chrX 1877967 . G . . END=1878082 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1318 +chrX 1878083 . CA C,CAA, 270.01 . AS_QUALapprox=|280|144|0;AS_VarDP=0|19|16|0;DP=50;QUALapprox=280;RAW_GT_COUNT=0,0,1;RAW_MQandDP=178164,50;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,19,16,0:35:99:280,0,136,463:0,0,21,14 +chrX 1878085 . A . . END=1878306 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1612 +chrX 1878307 . T A, 724.04 . AS_QUALapprox=|734|0;AS_VarDP=17|40|0;BaseQRankSum=-0.950;DP=58;MQRankSum=0.000;QUALapprox=734;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;ReadPosRankSum=0.122;VarDP=57 GT:AD:DP:GQ:PL:SB 1:17,40,0:57:99:734,0,1315:9,8,18,22 +chrX 1878308 . T . . END=1878670 GT:DP:GQ:MIN_DP:PL 0:67:41:67:0,41 +chrX 1878671 . C T, 2915.04 . AS_QUALapprox=|2925|0;AS_VarDP=0|76|0;DP=78;QUALapprox=2925;RAW_GT_COUNT=0,0,1;RAW_MQandDP=277156,78;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,76,0:76:99:2925,0,2925:0,0,46,30 +chrX 1878672 . T . . END=1878690 GT:DP:GQ:MIN_DP:PL 0:75:99:75:0,1800 +chrX 1878691 . A G, 371.04 . AS_QUALapprox=|381|0;AS_VarDP=30|45|0;BaseQRankSum=-1.508;DP=76;MQRankSum=-0.625;QUALapprox=381;RAW_GT_COUNT=0,0,1;RAW_MQandDP=269956,76;ReadPosRankSum=-0.590;VarDP=75 GT:AD:DP:GQ:PL:SB 1:30,45,0:75:99:381,0,1364:16,14,28,17 +chrX 1878692 . G . . END=1878914 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,854 +chrX 1878915 . CA C,CAA, 101.01 . AS_QUALapprox=|0|111|0;AS_VarDP=0|4|9|0;DP=46;QUALapprox=111;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154185,46;VarDP=13 GT:AD:DP:GQ:PL:SB 2:0,4,9,0:13:99:111,300,0,264:0,0,7,6 +chrX 1878917 . A . . END=1879288 GT:DP:GQ:MIN_DP:PL 0:62:85:62:0,85 +chrX 1879289 . G . . END=1879289 GT:DP:GQ:MIN_DP:PL 0:81:0:81:0,0 +chrX 1879290 . G . . END=1879321 GT:DP:GQ:MIN_DP:PL 0:81:99:81:0,1184 +chrX 1879322 . G . . END=1879322 GT:DP:GQ:MIN_DP:PL 0:75:0:75:0,0 +chrX 1879323 . C . . END=1879604 GT:DP:GQ:MIN_DP:PL 0:48:51:48:0,51 +chrX 1879605 . T C, 2376.04 . AS_QUALapprox=|2386|0;AS_VarDP=0|74|0;DP=76;QUALapprox=2386;RAW_GT_COUNT=0,0,1;RAW_MQandDP=273600,76;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,74,0:74:99:2386,0,2386:0,0,39,35 +chrX 1879606 . G . . END=1880172 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,984 +chrX 1880173 . CATAATA C, 2651.01 . AS_QUALapprox=|2661|0;AS_VarDP=0|60|0;DP=70;QUALapprox=2661;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:2661,0,2661:0,0,33,27 +chrX 1880180 . A . . END=1880216 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1800 +chrX 1880217 . C CA, 2334.01 . AS_QUALapprox=|2344|0;AS_VarDP=0|63|0;DP=63;QUALapprox=2344;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,63,0:63:99:2344,0,2344:0,0,36,27 +chrX 1880218 . A . . END=1880727 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,317 +chrX 1880728 . T C, 1444.04 . AS_QUALapprox=|1454|0;AS_VarDP=1|45|0;BaseQRankSum=-0.322;DP=46;MQRankSum=0.000;QUALapprox=1454;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;ReadPosRankSum=0.754;VarDP=46 GT:AD:DP:GQ:PL:SB 1:1,45,0:46:99:1454,0,1488:0,1,20,25 +chrX 1880729 . T . . END=1880917 GT:DP:GQ:MIN_DP:PL 0:42:99:42:0,138 +chrX 1880918 . AAG A, 1.39 . AS_QUALapprox=|11|0;AS_VarDP=22|22|0;BaseQRankSum=-1.747;DP=46;MQRankSum=0.000;QUALapprox=11;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;ReadPosRankSum=0.211;VarDP=44 GT:AD:DP:GQ:PL:SB 1:22,22,0:44:11:11,0,978:16,6,15,7 +chrX 1880921 . A . . END=1880942 GT:DP:GQ:MIN_DP:PL 0:41:99:41:0,1270 +chrX 1880943 . AGGAAGGAG A, 1635.01 . AS_QUALapprox=|1645|0;AS_VarDP=0|38|0;DP=44;QUALapprox=1645;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158400,44;VarDP=38 GT:AD:DP:GQ:PL:SB 1:0,38,0:38:99:1645,0,1645:0,0,27,11 +chrX 1880952 . G . . END=1881208 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,1027 +chrX 1881209 . G GGAA, 1921.01 . AS_QUALapprox=|1931|0;AS_VarDP=0|44|0;DP=45;QUALapprox=1931;RAW_GT_COUNT=0,0,1;RAW_MQandDP=160900,45;VarDP=44 GT:AD:DP:GQ:PL:SB 1:0,44,0:44:99:1931,0,1931:0,0,29,15 +chrX 1881210 . G . . END=1881327 GT:DP:GQ:MIN_DP:PL 0:41:99:41:0,673 +chrX 1881328 . A . . END=1881422 GT:DP:GQ:MIN_DP:PL 0:38:0:38:0,0 +chrX 1881423 . ACAGAGCAAG A, 129.01 . AS_QUALapprox=|139|0;AS_VarDP=2|12|0;DP=38;QUALapprox=139;RAW_GT_COUNT=0,0,1;RAW_MQandDP=130265,38;VarDP=14 GT:AD:DP:GQ:PL:SB 1:2,12,0:14:99:139,0,312:0,0,8,3 +chrX 1881433 . A *,AT, 129.01 . AS_QUALapprox=|0|139|0;AS_VarDP=0|2|11|0;DP=38;QUALapprox=139;RAW_GT_COUNT=0,0,1;RAW_MQandDP=130265,38;VarDP=13 GT:AD:DP:GQ:PL:SB 2:0,2,11,0:13:99:139,394,0,312:0,0,10,3 +chrX 1881434 . G . . END=1881446 GT:DP:GQ:MIN_DP:PL 0:38:0:38:0,0 +chrX 1881447 . AGCGAGAGAAGGAAGG A, 129.01 . AS_QUALapprox=|139|0;AS_VarDP=2|12|0;DP=38;QUALapprox=139;RAW_GT_COUNT=0,0,1;RAW_MQandDP=130265,38;VarDP=14 GT:AD:DP:GQ:PL:SB 1:2,12,0:14:99:139,0,312:0,0,8,3 +chrX 1881463 . A . . END=1881467 GT:DP:GQ:MIN_DP:PL 0:37:0:37:0,0 +chrX 1881468 . GCGAGAGAAGGAAGGAAGGACAGAGCAAGAGAAGGAAGGAAGGAGCGAGAGAAGGAAGGAAGGAGCGAGAGAAGGAAGGAAGGACAGAGCAAGAGAAGGAAGGAAGGAGCGAGAGAAGGAAGGAAGGAATGAAGGAATGAAGGAAGGAA G, 138.01 . AS_QUALapprox=|148|0;AS_VarDP=2|31|0;DP=57;QUALapprox=148;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198665,57;VarDP=33 GT:AD:DP:GQ:PL:SB 1:2,31,0:33:99:148,0,321:0,0,7,3 +chrX 1881605 . T G, 1295.04 . AS_QUALapprox=|1305|0;AS_VarDP=0|29|0;DP=29;QUALapprox=1305;RAW_GT_COUNT=0,0,1;RAW_MQandDP=101529,29;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:1305,0,1305:0,0,17,12 +chrX 1881613 . G A, 1473.04 . AS_QUALapprox=|1483|0;AS_VarDP=0|33|0;DP=33;QUALapprox=1483;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115929,33;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1483,0,1483:0,0,20,13 +chrX 1881615 . A G, 1508.04 . AS_QUALapprox=|1518|0;AS_VarDP=0|34|0;DP=34;QUALapprox=1518;RAW_GT_COUNT=0,0,1;RAW_MQandDP=119529,34;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1518,0,1518:0,0,20,14 +chrX 1881617 . G . . END=1881618 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,1036 +chrX 1881619 . A G, 1508.04 . AS_QUALapprox=|1518|0;AS_VarDP=0|34|0;DP=36;QUALapprox=1518;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126729,36;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1518,0,1518:0,0,20,14 +chrX 1881620 . A . . END=1881801 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1697 +chrX 1881802 . T C, 2145.04 . AS_QUALapprox=|2155|0;AS_VarDP=0|65|0;DP=66;QUALapprox=2155;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,65,0:65:99:2155,0,2155:0,0,31,34 +chrX 1881803 . C . . END=1881877 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1787 +chrX 1881878 . T C, 18.04 . AS_QUALapprox=|28|0;AS_VarDP=26|35|0;BaseQRankSum=-0.360;DP=61;MQRankSum=0.000;QUALapprox=28;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;ReadPosRankSum=0.930;VarDP=61 GT:AD:DP:GQ:PL:SB 1:26,35,0:61:28:28,0,1177:14,12,18,17 +chrX 1881879 . A . . END=1882338 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,178 +chrX 1882339 . C CTTT,CTTTTTTTTTT, 1358.67 . AS_QUALapprox=|1367|1369|0;AS_VarDP=0|23|23|0;DP=64;QUALapprox=1369;RAW_GT_COUNT=0,0,1;RAW_MQandDP=227376,64;VarDP=46 GT:AD:DP:GQ:PL:SB 2:0,23,23,0:46:2:1369,2,0,1188:0,0,24,22 +chrX 1882340 . T . . END=1882364 GT:DP:GQ:MIN_DP:PL 0:40:99:40:0,992 +chrX 1882365 . C G, 1256.04 . AS_QUALapprox=|1266|0;AS_VarDP=0|39|0;DP=42;QUALapprox=1266;RAW_GT_COUNT=0,0,1;RAW_MQandDP=150625,42;VarDP=39 GT:AD:DP:GQ:PL:SB 1:0,39,0:39:99:1266,0,1266:0,0,17,22 +chrX 1882366 . C . . END=1882645 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,1125 +chrX 1882646 . A G, 10.05 . AS_QUALapprox=|20|0;AS_VarDP=34|34|0;BaseQRankSum=0.861;DP=69;MQRankSum=0.000;QUALapprox=20;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;ReadPosRankSum=0.669;VarDP=68 GT:AD:DP:GQ:PL:SB 1:34,34,0:68:20:20,0,1162:20,14,24,10 +chrX 1882647 . C . . END=1882750 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,110 +chrX 1882751 . C T, 155.04 . AS_QUALapprox=|165|0;AS_VarDP=30|31|0;BaseQRankSum=3.278;DP=62;MQRankSum=-1.343;QUALapprox=165;RAW_GT_COUNT=0,0,1;RAW_MQandDP=206284,62;ReadPosRankSum=0.902;VarDP=61 GT:AD:DP:GQ:PL:SB 1:30,31,0:61:99:165,0,1067:14,16,19,12 +chrX 1882752 . G . . END=1882835 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1800 +chrX 1882836 . C T, 2381.04 . AS_QUALapprox=|2391|0;AS_VarDP=0|70|0;DP=74;QUALapprox=2391;RAW_GT_COUNT=0,0,1;RAW_MQandDP=204002,74;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,70,0:70:99:2391,0,2391:0,0,35,35 +chrX 1882837 . A . . END=1883083 GT:DP:GQ:MIN_DP:PL 0:85:99:85:0,1800 +chrX 1883084 . T A, 437.04 . AS_QUALapprox=|447|0;AS_VarDP=36|49|0;BaseQRankSum=0.344;DP=88;MQRankSum=0.000;QUALapprox=447;RAW_GT_COUNT=0,0,1;RAW_MQandDP=316800,88;ReadPosRankSum=-0.022;VarDP=85 GT:AD:DP:GQ:PL:SB 1:36,49,0:85:99:447,0,1593:15,21,19,30 +chrX 1883085 . T . . END=1883196 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1726 +chrX 1883197 . C CT, 293.01 . AS_QUALapprox=|303|0;AS_VarDP=11|27|0;BaseQRankSum=-2.409;DP=55;MQRankSum=1.625;QUALapprox=303;RAW_GT_COUNT=0,0,1;RAW_MQandDP=197425,55;ReadPosRankSum=-0.419;VarDP=38 GT:AD:DP:GQ:PL:SB 1:11,27,0:38:99:303,0,550:4,7,11,16 +chrX 1883198 . T . . END=1884022 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,148 +chrX 1884023 . C T, 1939.04 . AS_QUALapprox=|1949|0;AS_VarDP=0|62|0;DP=62;QUALapprox=1949;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:1949,0,1949:0,0,31,31 +chrX 1884024 . G . . END=1884060 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1800 +chrX 1884061 . TG T, 114.01 . AS_QUALapprox=|124|0;AS_VarDP=27|30|0;BaseQRankSum=-0.584;DP=59;MQRankSum=0.000;QUALapprox=124;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;ReadPosRankSum=0.392;VarDP=57 GT:AD:DP:GQ:PL:SB 1:27,30,0:57:99:124,0,1213:14,13,16,14 +chrX 1884063 . C . . END=1884813 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,104 +chrX 1884814 . C T, 2350.04 . AS_QUALapprox=|2360|0;AS_VarDP=0|70|0;DP=78;QUALapprox=2360;RAW_GT_COUNT=0,0,1;RAW_MQandDP=280800,78;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,70,0:70:99:2360,0,2360:0,0,38,32 +chrX 1884815 . C . . END=1885115 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1742 +chrX 1885116 . CA C, 1501.01 . AS_QUALapprox=|1511|0;AS_VarDP=0|62|0;DP=76;QUALapprox=1511;RAW_GT_COUNT=0,0,1;RAW_MQandDP=273600,76;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:1511,0,1511:0,0,35,27 +chrX 1885118 . A . . END=1885459 GT:DP:GQ:MIN_DP:PL 0:75:43:75:0,43 +chrX 1885460 . A G, 15.04 . AS_QUALapprox=|25|0;AS_VarDP=34|36|0;BaseQRankSum=-1.690;DP=72;MQRankSum=0.000;QUALapprox=25;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;ReadPosRankSum=-1.046;VarDP=70 GT:AD:DP:GQ:PL:SB 1:34,36,0:70:25:25,0,1161:17,17,18,18 +chrX 1885461 . T . . END=1886207 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1562 +chrX 1886208 . C G, 228.04 . AS_QUALapprox=|238|0;AS_VarDP=25|34|0;BaseQRankSum=-1.567;DP=61;MQRankSum=0.000;QUALapprox=238;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;ReadPosRankSum=-1.266;VarDP=59 GT:AD:DP:GQ:PL:SB 1:25,34,0:59:99:238,0,1085:14,11,18,16 +chrX 1886209 . C . . END=1886239 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1800 +chrX 1886240 . G A, 138.04 . AS_QUALapprox=|148|0;AS_VarDP=28|32|0;BaseQRankSum=0.600;DP=62;MQRankSum=0.000;QUALapprox=148;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;ReadPosRankSum=0.052;VarDP=60 GT:AD:DP:GQ:PL:SB 1:28,32,0:60:99:148,0,1081:15,13,16,16 +chrX 1886241 . A . . END=1886324 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1800 +chrX 1886325 . T G, 2294.04 . AS_QUALapprox=|2304|0;AS_VarDP=0|75|0;DP=77;QUALapprox=2304;RAW_GT_COUNT=0,0,1;RAW_MQandDP=276409,77;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,75,0:75:99:2304,0,2304:0,0,32,43 +chrX 1886326 . G . . END=1886381 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1800 +chrX 1886382 . C CA, 199.01 . AS_QUALapprox=|209|0;AS_VarDP=25|33|0;BaseQRankSum=-0.807;DP=64;MQRankSum=1.184;QUALapprox=209;RAW_GT_COUNT=0,0,1;RAW_MQandDP=229609,64;ReadPosRankSum=0.887;VarDP=58 GT:AD:DP:GQ:PL:SB 1:25,33,0:58:99:209,0,959:10,15,11,22 +chrX 1886383 . A . . END=1886553 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,278 +chrX 1886554 . CTTG C, 2725.01 . AS_QUALapprox=|2735|0;AS_VarDP=0|61|0;DP=67;QUALapprox=2735;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,61,0:61:99:2735,0,2735:0,0,31,30 +chrX 1886558 . T . . END=1886810 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1646 +chrX 1886811 . T C, 480.04 . AS_QUALapprox=|490|0;AS_VarDP=18|32|0;BaseQRankSum=1.540;DP=50;MQRankSum=0.000;QUALapprox=490;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;ReadPosRankSum=-0.111;VarDP=50 GT:AD:DP:GQ:PL:SB 1:18,32,0:50:99:490,0,1061:7,11,14,18 +chrX 1886812 . T . . END=1887049 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,229 +chrX 1887050 . C CT, 948.01 . AS_QUALapprox=|958|0;AS_VarDP=1|41|0;BaseQRankSum=-0.339;DP=51;MQRankSum=0.000;QUALapprox=958;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183025,51;ReadPosRankSum=0.330;VarDP=42 GT:AD:DP:GQ:PL:SB 1:1,41,0:42:99:958,0,982:1,0,24,17 +chrX 1887051 . T . . END=1888066 GT:DP:GQ:MIN_DP:PL 0:3:20:1:0,20 +chrX 1888067 . A . . END=1888067 GT:DP:GQ:MIN_DP:PL 0:4:0:4:0,0 +chrX 1888068 . C . . END=1888074 GT:DP:GQ:MIN_DP:PL 0:3:29:2:0,29 +chrX 1888075 . A . . END=1888076 GT:DP:GQ:MIN_DP:PL 0:3:10:3:0,10 +chrX 1888077 . T . . END=1888170 GT:DP:GQ:MIN_DP:PL 0:5:45:5:0,45 +chrX 1888171 . G . . END=1888200 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1888201 . C . . END=1891509 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 1891510 . TCC T,TC, 248.01 . AS_QUALapprox=|0|258|0;AS_VarDP=3|9|9|0;BaseQRankSum=-0.447;DP=43;MQRankSum=1.071;QUALapprox=258;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136272,43;ReadPosRankSum=-0.503;VarDP=21 GT:AD:DP:GQ:PL:SB 2:3,9,9,0:21:99:258,459,0,517:3,0,6,12 +chrX 1891513 . C . . END=1891541 GT:DP:GQ:MIN_DP:PL 0:22:99:22:0,530 +chrX 1891542 . T C, 739.04 . AS_QUALapprox=|749|0;AS_VarDP=0|23|0;DP=23;QUALapprox=749;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:749,0,749:0,0,3,20 +chrX 1891543 . G . . END=1891809 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,804 +chrX 1891810 . C T, 1633.04 . AS_QUALapprox=|1643|0;AS_VarDP=0|49|0;DP=49;QUALapprox=1643;RAW_GT_COUNT=0,0,1;RAW_MQandDP=171459,49;VarDP=49 GT:AD:DP:GQ:PL:SB 1:0,49,0:49:99:1643,0,1643:0,0,24,25 +chrX 1891811 . G . . END=1891833 GT:DP:GQ:MIN_DP:PL 0:45:99:45:0,1409 +chrX 1891834 . C G, 1418.04 . AS_QUALapprox=|1428|0;AS_VarDP=0|46|0;DP=48;QUALapprox=1428;RAW_GT_COUNT=0,0,1;RAW_MQandDP=164420,48;VarDP=46 GT:AD:DP:GQ:PL:SB 1:0,46,0:46:99:1428,0,1428:0,0,22,24 +chrX 1891835 . T . . END=1891879 GT:DP:GQ:MIN_DP:PL 0:46:99:46:0,1370 +chrX 1891880 . C T, 248.04 . AS_QUALapprox=|258|0;AS_VarDP=18|26|0;BaseQRankSum=-0.392;DP=49;MQRankSum=-0.931;QUALapprox=258;RAW_GT_COUNT=0,0,1;RAW_MQandDP=168506,49;ReadPosRankSum=0.215;VarDP=44 GT:AD:DP:GQ:PL:SB 1:18,26,0:44:99:258,0,839:8,10,14,12 +chrX 1891881 . A . . END=1892588 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1454 +chrX 1892589 . AT A, 2164.01 . AS_QUALapprox=|2174|0;AS_VarDP=0|68|0;DP=70;QUALapprox=2174;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,68,0:68:99:2174,0,2174:0,0,43,25 +chrX 1892591 . T . . END=1893194 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1413 +chrX 1893195 . ATTTT A,AT, 1022.01 . AS_QUALapprox=|991|1032|0;AS_VarDP=0|16|17|0;DP=57;QUALapprox=1032;RAW_GT_COUNT=0,0,1;RAW_MQandDP=186793,57;VarDP=33 GT:AD:DP:GQ:PL:SB 2:0,16,17,0:33:41:1032,41,0,725:0,0,16,17 +chrX 1893200 . T . . END=1893321 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,239 +chrX 1893322 . G A, 174.04 . AS_QUALapprox=|184|0;AS_VarDP=23|29|0;BaseQRankSum=0.024;DP=58;MQRankSum=-1.550;QUALapprox=184;RAW_GT_COUNT=0,0,1;RAW_MQandDP=204227,58;ReadPosRankSum=0.424;VarDP=52 GT:AD:DP:GQ:PL:SB 1:23,29,0:52:99:184,0,913:18,5,11,18 +chrX 1893323 . T . . END=1893552 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,267 +chrX 1893553 . G A, 1985.04 . AS_QUALapprox=|1995|0;AS_VarDP=0|59|0;DP=62;QUALapprox=1995;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:1995,0,1995:0,0,28,31 +chrX 1893554 . T . . END=1893606 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1800 +chrX 1893607 . T C, 20.04 . AS_QUALapprox=|30|0;AS_VarDP=31|31|0;BaseQRankSum=1.000;DP=63;MQRankSum=0.000;QUALapprox=30;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;ReadPosRankSum=0.275;VarDP=62 GT:AD:DP:GQ:PL:SB 1:31,31,0:62:30:30,0,1038:17,14,17,14 +chrX 1893608 . A . . END=1894419 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,160 +chrX 1894420 . C CCTCT, 73.01 . AS_QUALapprox=|83|0;AS_VarDP=25|27|0;BaseQRankSum=-0.602;DP=54;MQRankSum=0.000;QUALapprox=83;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;ReadPosRankSum=0.183;VarDP=52 GT:AD:DP:GQ:PL:SB 1:25,27,0:52:83:83,0,1208:15,10,9,18 +chrX 1894421 . C . . END=1894436 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,1361 +chrX 1894437 . C . . END=1894437 GT:DP:GQ:MIN_DP:PL 0:57:0:57:0,0 +chrX 1894438 . T . . END=1894470 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,1387 +chrX 1894471 . CCTCT C, 13 . AS_QUALapprox=|23|0;AS_VarDP=25|26|0;BaseQRankSum=0.012;DP=53;MQRankSum=-0.941;QUALapprox=23;RAW_GT_COUNT=0,0,1;RAW_MQandDP=188800,53;ReadPosRankSum=-1.554;VarDP=51 GT:AD:DP:GQ:PL:SB 1:25,26,0:51:23:23,0,1148:14,11,12,14 +chrX 1894476 . G . . END=1894548 GT:DP:GQ:MIN_DP:PL 0:40:36:37:0,36 +chrX 1894549 . T . . END=1894552 GT:DP:GQ:MIN_DP:PL 0:37:0:37:0,0 +chrX 1894553 . T . . END=1894665 GT:DP:GQ:MIN_DP:PL 0:40:99:40:0,601 +chrX 1894666 . A T, 1364.04 . AS_QUALapprox=|1374|0;AS_VarDP=0|43|0;DP=45;QUALapprox=1374;RAW_GT_COUNT=0,0,1;RAW_MQandDP=159253,45;VarDP=43 GT:AD:DP:GQ:PL:SB 1:0,43,0:43:99:1374,0,1374:0,0,21,22 +chrX 1894667 . T . . END=1895509 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,148 +chrX 1895510 . C CACACACACACAG, 1910.01 . AS_QUALapprox=|1920|0;AS_VarDP=0|43|0;DP=54;QUALapprox=1920;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=43 GT:AD:DP:GQ:PL:SB 1:0,43,0:43:99:1920,0,1923:0,0,16,27 +chrX 1895511 . A . . END=1895645 GT:DP:GQ:MIN_DP:PL 0:56:74:56:0,74 +chrX 1895646 . C . . END=1895646 GT:DP:GQ:MIN_DP:PL 0:42:19:42:0,19 +chrX 1895647 . A . . END=1895715 GT:DP:GQ:MIN_DP:PL 0:44:87:44:0,87 +chrX 1895716 . TACACAGAC T, 296.01 . AS_QUALapprox=|306|0;AS_VarDP=16|23|0;BaseQRankSum=0.333;DP=47;MQRankSum=0.000;QUALapprox=306;RAW_GT_COUNT=0,0,1;RAW_MQandDP=166969,47;ReadPosRankSum=-2.515;VarDP=39 GT:AD:DP:GQ:PL:SB 1:16,23,0:39:99:306,0,1022:7,9,9,14 +chrX 1895725 . A . . END=1895731 GT:DP:GQ:MIN_DP:PL 0:41:99:41:0,1216 +chrX 1895732 . GAC G, 251.01 . AS_QUALapprox=|261|0;AS_VarDP=18|24|0;BaseQRankSum=-1.447;DP=44;MQRankSum=0.000;QUALapprox=261;RAW_GT_COUNT=0,0,1;RAW_MQandDP=156169,44;ReadPosRankSum=-2.846;VarDP=42 GT:AD:DP:GQ:PL:SB 1:18,24,0:42:99:261,0,1036:7,11,9,15 +chrX 1895735 . A . . END=1895853 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1178 +chrX 1895854 . GAC G,CAC, 510.01 . AS_QUALapprox=|520|0|0;AS_VarDP=15|29|2|0;BaseQRankSum=-1.839;DP=59;MQRankSum=0.000;QUALapprox=520;RAW_GT_COUNT=0,0,1;RAW_MQandDP=209200,59;ReadPosRankSum=-0.399;VarDP=46 GT:AD:DP:GQ:PL:SB 1:15,29,2,0:46:99:520,0,1322,1207:5,10,20,11 +chrX 1895857 . A . . END=1896576 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,428 +chrX 1896577 . A G, 1798.04 . AS_QUALapprox=|1808|0;AS_VarDP=1|64|0;BaseQRankSum=0.864;DP=70;MQRankSum=0.000;QUALapprox=1808;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;ReadPosRankSum=-0.960;VarDP=65 GT:AD:DP:GQ:PL:SB 1:1,64,0:65:99:1808,0,1833:1,0,29,35 +chrX 1896578 . C . . END=1896605 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1747 +chrX 1896606 . T C, 1895.04 . AS_QUALapprox=|1905|0;AS_VarDP=0|60|0;DP=64;QUALapprox=1905;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:1905,0,1905:0,0,26,34 +chrX 1896607 . C . . END=1896651 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1632 +chrX 1896652 . G A, 199.04 . AS_QUALapprox=|209|0;AS_VarDP=25|31|0;BaseQRankSum=0.596;DP=59;MQRankSum=-0.862;QUALapprox=209;RAW_GT_COUNT=0,0,1;RAW_MQandDP=210916,59;ReadPosRankSum=-0.445;VarDP=56 GT:AD:DP:GQ:PL:SB 1:25,31,0:56:99:209,0,947:11,14,12,19 +chrX 1896653 . T . . END=1896808 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1438 +chrX 1896809 . C A, 1298.04 . AS_QUALapprox=|1308|0;AS_VarDP=3|47|0;BaseQRankSum=0.602;DP=56;MQRankSum=2.544;QUALapprox=1308;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183299,56;ReadPosRankSum=1.042;VarDP=50 GT:AD:DP:GQ:PL:SB 1:3,47,0:50:99:1308,0,1392:2,1,30,17 +chrX 1896810 . C . . END=1898075 GT:DP:GQ:MIN_DP:PL 0:61:59:61:0,59 +chrX 1898076 . C A, 91.04 . AS_QUALapprox=|101|0;AS_VarDP=33|33|0;BaseQRankSum=2.039;DP=70;MQRankSum=0.000;QUALapprox=101;RAW_GT_COUNT=0,0,1;RAW_MQandDP=250704,70;ReadPosRankSum=1.501;VarDP=66 GT:AD:DP:GQ:PL:SB 1:33,33,0:66:99:101,0,1097:13,20,17,16 +chrX 1898077 . C . . END=1898668 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,535 +chrX 1898669 . A G, 187.04 . AS_QUALapprox=|197|0;AS_VarDP=21|28|0;BaseQRankSum=-1.418;DP=50;MQRankSum=0.000;QUALapprox=197;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;ReadPosRankSum=0.131;VarDP=49 GT:AD:DP:GQ:PL:SB 1:21,28,0:49:99:197,0,853:9,12,17,11 +chrX 1898670 . A . . END=1898946 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1559 +chrX 1898947 . C T, 2723.04 . AS_QUALapprox=|2733|0;AS_VarDP=0|85|0;DP=87;QUALapprox=2733;RAW_GT_COUNT=0,0,1;RAW_MQandDP=312736,87;VarDP=85 GT:AD:DP:GQ:PL:SB 1:0,85,0:85:99:2733,0,2733:0,0,48,37 +chrX 1898948 . G . . END=1899275 GT:DP:GQ:MIN_DP:PL 0:76:99:76:0,248 +chrX 1899276 . CT C, 223.01 . AS_QUALapprox=|233|0;AS_VarDP=28|36|0;BaseQRankSum=-0.663;DP=75;MQRankSum=0.000;QUALapprox=233;RAW_GT_COUNT=0,0,1;RAW_MQandDP=270000,75;ReadPosRankSum=0.684;VarDP=64 GT:AD:DP:GQ:PL:SB 1:28,36,0:64:99:233,0,1027:13,15,20,16 +chrX 1899278 . T . . END=1899293 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1800 +chrX 1899294 . A G, 408.04 . AS_QUALapprox=|418|0;AS_VarDP=30|41|0;BaseQRankSum=1.307;DP=74;MQRankSum=0.000;QUALapprox=418;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;ReadPosRankSum=1.636;VarDP=71 GT:AD:DP:GQ:PL:SB 1:30,41,0:71:99:418,0,1365:13,17,22,19 +chrX 1899295 . G . . END=1899340 GT:DP:GQ:MIN_DP:PL 0:76:99:76:0,461 +chrX 1899341 . C G, 95.04 . AS_QUALapprox=|105|0;AS_VarDP=29|43|0;BaseQRankSum=-0.248;DP=73;MQRankSum=-0.793;QUALapprox=105;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262225,73;ReadPosRankSum=-0.310;VarDP=72 GT:AD:DP:GQ:PL:SB 1:29,43,0:72:99:105,0,1409:11,18,17,26 +chrX 1899342 . C . . END=1899431 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1800 +chrX 1899432 . A G, 256.04 . AS_QUALapprox=|266|0;AS_VarDP=25|35|0;BaseQRankSum=-2.195;DP=66;MQRankSum=-0.811;QUALapprox=266;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237025,66;ReadPosRankSum=0.593;VarDP=60 GT:AD:DP:GQ:PL:SB 1:25,35,0:60:99:266,0,1124:6,19,10,25 +chrX 1899433 . G . . END=1900239 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1488 +chrX 1900240 . G T, 437.04 . AS_QUALapprox=|447|0;AS_VarDP=29|44|0;BaseQRankSum=-0.220;DP=75;MQRankSum=-0.784;QUALapprox=447;RAW_GT_COUNT=0,0,1;RAW_MQandDP=268704,75;ReadPosRankSum=1.167;VarDP=73 GT:AD:DP:GQ:PL:SB 1:29,44,0:73:99:447,0,1404:13,16,16,28 +chrX 1900241 . G . . END=1900299 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1800 +chrX 1900300 . A G, 2481.04 . AS_QUALapprox=|2491|0;AS_VarDP=0|76|0;DP=78;QUALapprox=2491;RAW_GT_COUNT=0,0,1;RAW_MQandDP=280800,78;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,76,0:76:99:2491,0,2491:0,0,34,42 +chrX 1900301 . G . . END=1900502 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1480 +chrX 1900503 . AT A, 1648.01 . AS_QUALapprox=|1658|0;AS_VarDP=0|47|0;DP=50;QUALapprox=1658;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=47 GT:AD:DP:GQ:PL:SB 1:0,47,0:47:99:1658,0,1658:0,0,17,30 +chrX 1900505 . T . . END=1900736 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,154 +chrX 1900737 . G C, 460.04 . AS_QUALapprox=|470|0;AS_VarDP=16|28|0;BaseQRankSum=-0.739;DP=44;MQRankSum=-0.709;QUALapprox=470;RAW_GT_COUNT=0,0,1;RAW_MQandDP=155700,44;ReadPosRankSum=-1.402;VarDP=44 GT:AD:DP:GQ:PL:SB 1:16,28,0:44:99:470,0,1073:5,11,13,15 +chrX 1900738 . A . . END=1900742 GT:DP:GQ:MIN_DP:PL 0:41:99:41:0,1170 +chrX 1900743 . ATTT A,AT, 832.01 . AS_QUALapprox=|466|842|0;AS_VarDP=0|12|26|0;DP=43;QUALapprox=842;RAW_GT_COUNT=0,0,1;RAW_MQandDP=152100,43;VarDP=38 GT:AD:DP:GQ:PL:SB 2:0,12,26,0:38:99:842,376,0,922:0,0,16,22 +chrX 1900747 . T . . END=1900807 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,635 +chrX 1900808 . C A, 172.04 . AS_QUALapprox=|182|0;AS_VarDP=9|15|0;BaseQRankSum=-0.156;DP=24;MQRankSum=0.000;QUALapprox=182;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;ReadPosRankSum=-0.388;VarDP=24 GT:AD:DP:GQ:PL:SB 1:9,15,0:24:99:182,0,485:5,4,5,10 +chrX 1900809 . A . . END=1900984 GT:DP:GQ:MIN_DP:PL 0:43:99:43:0,822 +chrX 1900985 . C T, 284.04 . AS_QUALapprox=|294|0;AS_VarDP=22|29|0;BaseQRankSum=2.695;DP=53;MQRankSum=1.188;QUALapprox=294;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190225,53;ReadPosRankSum=0.342;VarDP=51 GT:AD:DP:GQ:PL:SB 1:22,29,0:51:99:294,0,1008:11,11,17,12 +chrX 1900986 . G . . END=1901464 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1591 +chrX 1901465 . CA C, 1301.01 . AS_QUALapprox=|1311|0;AS_VarDP=1|50|0;BaseQRankSum=-0.264;DP=63;MQRankSum=0.000;QUALapprox=1311;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;ReadPosRankSum=-1.529;VarDP=51 GT:AD:DP:GQ:PL:SB 1:1,50,0:51:99:1311,0,1318:0,1,28,22 +chrX 1901467 . A . . END=1901855 GT:DP:GQ:MIN_DP:PL 0:79:99:79:0,471 +chrX 1901856 . T C, 1477.04 . AS_QUALapprox=|1487|0;AS_VarDP=2|48|0;BaseQRankSum=2.974;DP=52;MQRankSum=-0.301;QUALapprox=1487;RAW_GT_COUNT=0,0,1;RAW_MQandDP=178988,52;ReadPosRankSum=-0.644;VarDP=50 GT:AD:DP:GQ:PL:SB 1:2,48,0:50:99:1487,0,1506:2,0,19,29 +chrX 1901857 . G . . END=1903064 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,993 +chrX 1903065 . G A, 10.05 . AS_QUALapprox=|20|0;AS_VarDP=35|36|0;BaseQRankSum=-0.852;DP=74;MQRankSum=0.000;QUALapprox=20;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;ReadPosRankSum=-0.178;VarDP=71 GT:AD:DP:GQ:PL:SB 1:35,36,0:71:20:20,0,1181:21,14,21,15 +chrX 1903066 . T . . END=1903448 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1658 +chrX 1903449 . G C, 344.04 . AS_QUALapprox=|354|0;AS_VarDP=28|40|0;BaseQRankSum=-1.531;DP=71;MQRankSum=0.000;QUALapprox=354;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;ReadPosRankSum=-1.714;VarDP=68 GT:AD:DP:GQ:PL:SB 1:28,40,0:68:99:354,0,1278:9,19,23,17 +chrX 1903450 . C . . END=1903464 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1800 +chrX 1903465 . A G, 3063.04 . AS_QUALapprox=|3073|0;AS_VarDP=0|70|0;DP=70;QUALapprox=3073;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,70,0:70:99:3073,0,3073:0,0,33,37 +chrX 1903466 . C . . END=1903473 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1800 +chrX 1903474 . T C, 2905.04 . AS_QUALapprox=|2915|0;AS_VarDP=0|65|0;DP=65;QUALapprox=2915;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,65,0:65:99:2915,0,2915:0,0,30,35 +chrX 1903475 . C . . END=1903551 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1800 +chrX 1903552 . A G, 366.04 . AS_QUALapprox=|376|0;AS_VarDP=28|42|0;BaseQRankSum=-2.138;DP=72;MQRankSum=0.000;QUALapprox=376;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;ReadPosRankSum=-0.234;VarDP=70 GT:AD:DP:GQ:PL:SB 1:28,42,0:70:99:376,0,1320:17,11,17,25 +chrX 1903553 . T . . END=1904182 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1471 +chrX 1904183 . T C, 425.04 . AS_QUALapprox=|435|0;AS_VarDP=17|31|0;BaseQRankSum=-1.234;DP=52;MQRankSum=0.000;QUALapprox=435;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;ReadPosRankSum=-0.550;VarDP=48 GT:AD:DP:GQ:PL:SB 1:17,31,0:48:99:435,0,1016:9,8,17,14 +chrX 1904184 . C . . END=1904207 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,1511 +chrX 1904208 . A G, 300.04 . AS_QUALapprox=|310|0;AS_VarDP=20|30|0;BaseQRankSum=0.080;DP=51;MQRankSum=0.000;QUALapprox=310;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;ReadPosRankSum=0.981;VarDP=50 GT:AD:DP:GQ:PL:SB 1:20,30,0:50:99:310,0,956:8,12,16,14 +chrX 1904209 . G . . END=1904274 GT:DP:GQ:MIN_DP:PL 0:45:99:45:0,1325 +chrX 1904275 . C A, 1539.04 . AS_QUALapprox=|1549|0;AS_VarDP=0|46|0;DP=53;QUALapprox=1549;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=46 GT:AD:DP:GQ:PL:SB 1:0,46,0:46:99:1549,0,1549:0,0,22,24 +chrX 1904276 . A . . END=1904625 GT:DP:GQ:MIN_DP:PL 0:48:90:48:0,90 +chrX 1904626 . G . . END=1904626 GT:DP:GQ:MIN_DP:PL 0:34:0:34:0,0 +chrX 1904627 . A ATGATGATAATGGTGATGATGTGATGGTGATGATAGTGATGGTGATGATGGTGATGGTGAGGATGCTGATGGTGATGACGGTGATAATGGTGAGAATGATGACAGTGATGATGTGATGGTGATGATGATGATAGGGTGAAAATGTGATGATGATGATGGTGATGATATGGTGATGGTGATGGTGATGATAGTGATGTATGGTGATGGTGATGG,ATGATGATAATGGTGATGATGTGATGGTGATGATAGTGATGGTGATGATGGTGATGGTGAGGATGCTGATGGTGATGACGGTGATAATGGTGATAATGATGACAGTGATGATGTGATGGTGATGATGATGATAGGGTGAAAATGTGATGATGATGATGGTGATGATATGGTGATGGTGATGGTGATGATAGTGATGTATGGTGATGGTGATGG,ATGATGATAATGGTGATGATGTGATGGTGATGATAGTGATGGTGATGATGGTGATGATGATGATGGAGATGAGGATGATGGTGATGATGGTGATAATGGTGAGAATGATGACAGTGATGATGTGATGGTGATGATGATGATAGGGTGAAAATGTGATGATGATGATGGTGATGATATGGTGATGGTGATGGTGATGATAGTGATGTATGGTGATGGTGATGG,ATGATGATAATGGTGATGATGTGATGGTGATGATAGTGATGGTGATGATGGTGATGATGATGATGGAGATGAGGATGATGGTGATGATGGTGATAATGGTGATAATGATGACAGTGATGATGTGATGGTGATGATGATGATAGGGTGAAAATGTGATGATGATGATGGTGATGATATGGTGATGGTGATGGTGATGATAGTGATGTATGGTGATGGTGATGG, 1805.01 . AS_QUALapprox=|1815|1815|1438|1542|0;AS_VarDP=0|0|0|0|3|0;DP=76;QUALapprox=1815;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241491,76;VarDP=3 GT:AD:DP:GQ:PL:SB 1:0,0,0,0,3,0:3:0:1815,0,0,377,273,1127:0,0,2,1 +chrX 1904628 . T . . END=1905790 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,491 +chrX 1905791 . A G, 282.04 . AS_QUALapprox=|292|0;AS_VarDP=23|34|0;BaseQRankSum=-2.652;DP=57;MQRankSum=0.000;QUALapprox=292;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;ReadPosRankSum=0.089;VarDP=57 GT:AD:DP:GQ:PL:SB 1:23,34,0:57:99:292,0,1092:16,7,15,19 +chrX 1905792 . C . . END=1905850 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1712 +chrX 1905851 . T C, 34.04 . AS_QUALapprox=|44|0;AS_VarDP=28|31|0;BaseQRankSum=-1.498;DP=61;MQRankSum=0.000;QUALapprox=44;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;ReadPosRankSum=-0.266;VarDP=59 GT:AD:DP:GQ:PL:SB 1:28,31,0:59:44:44,0,967:17,11,14,17 +chrX 1905852 . G . . END=1906143 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1424 +chrX 1906144 . G A, 343.04 . AS_QUALapprox=|353|0;AS_VarDP=21|32|0;BaseQRankSum=-1.109;DP=54;MQRankSum=0.000;QUALapprox=353;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;ReadPosRankSum=-0.264;VarDP=53 GT:AD:DP:GQ:PL:SB 1:21,32,0:53:99:353,0,1058:10,11,15,17 +chrX 1906145 . A . . END=1906997 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1415 +chrX 1906998 . G C, 2679.04 . AS_QUALapprox=|2689|0;AS_VarDP=0|60|0;DP=60;QUALapprox=2689;RAW_GT_COUNT=0,0,1;RAW_MQandDP=214850,60;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:2689,0,2689:0,0,30,30 +chrX 1906999 . A G, 2679.04 . AS_QUALapprox=|2689|0;AS_VarDP=0|60|0;DP=61;QUALapprox=2689;RAW_GT_COUNT=0,0,1;RAW_MQandDP=218450,61;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:2689,0,2689:0,0,30,30 +chrX 1907000 . G . . END=1907892 GT:DP:GQ:MIN_DP:PL 0:61:59:61:0,59 +chrX 1907893 . A G, 2078.04 . AS_QUALapprox=|2088|0;AS_VarDP=0|67|0;DP=68;QUALapprox=2088;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244225,68;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,67,0:67:99:2088,0,2088:0,0,29,38 +chrX 1907894 . T . . END=1908878 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1573 +chrX 1908879 . G A, 2168.04 . AS_QUALapprox=|2178|0;AS_VarDP=0|67|0;DP=69;QUALapprox=2178;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248162,69;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,67,0:67:99:2178,0,2178:0,0,25,42 +chrX 1908880 . C . . END=1909570 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1493 +chrX 1909571 . G A, 1852.04 . AS_QUALapprox=|1862|0;AS_VarDP=0|55|0;DP=56;QUALapprox=1862;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:1862,0,1862:0,0,26,29 +chrX 1909572 . T . . END=1909946 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1538 +chrX 1909947 . A G, 2039.04 . AS_QUALapprox=|2049|0;AS_VarDP=0|64|0;DP=64;QUALapprox=2049;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,64,0:64:99:2049,0,2049:0,0,28,36 +chrX 1909948 . C . . END=1909998 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1722 +chrX 1909999 . C CCT, 2641.01 . AS_QUALapprox=|2651|0;AS_VarDP=0|61|0;DP=65;QUALapprox=2651;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,61,0:61:99:2651,0,2651:0,0,25,36 +chrX 1910000 . C . . END=1910060 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,1453 +chrX 1910061 . CCTCTTTCTCCCACTCT C, 6.95 . AS_QUALapprox=|17|0;AS_VarDP=18|18|0;BaseQRankSum=0.901;DP=54;MQRankSum=0.000;QUALapprox=17;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;ReadPosRankSum=-0.741;VarDP=36 GT:AD:DP:GQ:PL:SB 1:18,18,0:36:17:17,0,804:7,11,8,10 +chrX 1910078 . C . . END=1910227 GT:DP:GQ:MIN_DP:PL 0:39:99:39:0,772 +chrX 1910228 . C CCTCT, 919.01 . AS_QUALapprox=|929|0;AS_VarDP=1|23|0;BaseQRankSum=-0.546;DP=30;MQRankSum=-0.151;QUALapprox=929;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104000,30;ReadPosRankSum=-0.434;VarDP=24 GT:AD:DP:GQ:PL:SB 1:1,23,0:24:99:929,0,974:0,1,9,14 +chrX 1910229 . C . . END=1910279 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,802 +chrX 1910280 . TCTCA T, 226.01 . AS_QUALapprox=|236|0;AS_VarDP=11|18|0;BaseQRankSum=-2.080;DP=33;MQRankSum=-0.711;QUALapprox=236;RAW_GT_COUNT=0,0,1;RAW_MQandDP=116800,33;ReadPosRankSum=-0.695;VarDP=29 GT:AD:DP:GQ:PL:SB 1:11,18,0:29:99:236,0,710:6,5,7,11 +chrX 1910285 . C . . END=1910438 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,568 +chrX 1910439 . A T, 913.04 . AS_QUALapprox=|923|0;AS_VarDP=0|28|0;DP=30;QUALapprox=923;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:923,0,923:0,0,12,16 +chrX 1910440 . C . . END=1910488 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,654 +chrX 1910489 . CCTT C, 337.01 . AS_QUALapprox=|347|0;AS_VarDP=11|19|0;BaseQRankSum=-0.340;DP=35;MQRankSum=0.000;QUALapprox=347;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;ReadPosRankSum=-1.194;VarDP=30 GT:AD:DP:GQ:PL:SB 1:11,19,0:30:99:347,0,842:5,6,7,12 +chrX 1910493 . C . . END=1910619 GT:DP:GQ:MIN_DP:PL 0:39:99:39:0,554 +chrX 1910620 . CTCT C, 395.01 . AS_QUALapprox=|405|0;AS_VarDP=10|19|0;BaseQRankSum=0.244;DP=32;MQRankSum=-1.492;QUALapprox=405;RAW_GT_COUNT=0,0,1;RAW_MQandDP=105758,32;ReadPosRankSum=0.732;VarDP=29 GT:AD:DP:GQ:PL:SB 1:10,19,0:29:99:405,0,837:4,6,7,12 +chrX 1910624 . T . . END=1910634 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,659 +chrX 1910635 . CCCCTCTTCCTGCCTCTCTTCCTCTCTTCCT C, 218.01 . AS_QUALapprox=|228|0;AS_VarDP=15|20|0;BaseQRankSum=1.112;DP=38;MQRankSum=-0.482;QUALapprox=228;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122898,38;ReadPosRankSum=0.220;VarDP=35 GT:AD:DP:GQ:PL:SB 1:15,20,0:35:99:228,0,876:8,7,8,12 +chrX 1910666 . C . . END=1910687 GT:DP:GQ:MIN_DP:PL 0:49:0:49:0,0 +chrX 1910688 . C . . END=1910759 GT:DP:GQ:MIN_DP:PL 0:77:99:77:0,1326 +chrX 1910760 . G C, 2034.04 . AS_QUALapprox=|2044|0;AS_VarDP=0|70|0;DP=76;QUALapprox=2044;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259412,76;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,70,0:70:99:2044,0,2044:0,0,31,39 +chrX 1910761 . T . . END=1910909 GT:DP:GQ:MIN_DP:PL 0:47:45:47:0,45 +chrX 1910910 . T . . END=1910912 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1910913 . T . . END=1910919 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 1910920 . C . . END=1911240 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 1911241 . T . . END=1911416 GT:DP:GQ:MIN_DP:PL 0:26:70:26:0,70 +chrX 1911417 . CCCT C, 24 . AS_QUALapprox=|34|0;AS_VarDP=21|22|0;BaseQRankSum=-0.737;DP=45;MQRankSum=0.000;QUALapprox=34;RAW_GT_COUNT=0,0,1;RAW_MQandDP=160801,45;ReadPosRankSum=0.438;VarDP=43 GT:AD:DP:GQ:PL:SB 1:21,22,0:43:34:34,0,979:8,13,11,11 +chrX 1911421 . T . . END=1911425 GT:DP:GQ:MIN_DP:PL 0:42:99:42:0,810 +chrX 1911426 . T . . END=1911429 GT:DP:GQ:MIN_DP:PL 0:42:0:42:0,0 +chrX 1911430 . T . . END=1911438 GT:DP:GQ:MIN_DP:PL 0:43:99:43:0,1304 +chrX 1911439 . T . . END=1911441 GT:DP:GQ:MIN_DP:PL 0:46:14:46:0,14 +chrX 1911442 . T . . END=1911622 GT:DP:GQ:MIN_DP:PL 0:41:45:40:0,45 +chrX 1911623 . C CCT, 18 . AS_QUALapprox=|28|0;AS_VarDP=24|25|0;BaseQRankSum=-1.169;DP=61;MQRankSum=0.000;QUALapprox=28;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216841,61;ReadPosRankSum=-0.150;VarDP=49 GT:AD:DP:GQ:PL:SB 1:24,25,0:49:28:28,0,1184:12,12,15,10 +chrX 1911624 . C . . END=1911734 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1070 +chrX 1911735 . T TCACA, 320.01 . AS_QUALapprox=|330|0;AS_VarDP=22|31|0;BaseQRankSum=0.410;DP=60;MQRankSum=-0.804;QUALapprox=330;RAW_GT_COUNT=0,0,1;RAW_MQandDP=213184,60;ReadPosRankSum=0.424;VarDP=53 GT:AD:DP:GQ:PL:SB 1:22,31,0:53:99:330,0,1320:13,9,14,17 +chrX 1911736 . C . . END=1912951 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1541 +chrX 1912952 . C A, 0.01 . AS_QUALapprox=|1|0;AS_VarDP=29|27|0;BaseQRankSum=1.471;DP=57;MQRankSum=0.000;QUALapprox=1;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;ReadPosRankSum=0.221;VarDP=56 GT:AD:DP:GQ:PL:SB 1:29,27,0:56:1:1,0,919:12,17,14,13 +chrX 1912953 . A . . END=1912997 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1125 +chrX 1912998 . T . . END=1912998 GT:DP:GQ:MIN_DP:PL 0:56:0:56:0,0 +chrX 1912999 . A . . END=1914199 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1388 +chrX 1914200 . C T, 371.04 . AS_QUALapprox=|381|0;AS_VarDP=28|40|0;BaseQRankSum=-1.171;DP=68;MQRankSum=0.000;QUALapprox=381;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;ReadPosRankSum=-0.698;VarDP=68 GT:AD:DP:GQ:PL:SB 1:28,40,0:68:99:381,0,1354:18,10,24,16 +chrX 1914201 . A . . END=1914469 GT:DP:GQ:MIN_DP:PL 0:84:99:84:0,142 +chrX 1914470 . A G, 304.04 . AS_QUALapprox=|314|0;AS_VarDP=33|42|0;BaseQRankSum=0.113;DP=77;MQRankSum=0.000;QUALapprox=314;RAW_GT_COUNT=0,0,1;RAW_MQandDP=277200,77;ReadPosRankSum=2.066;VarDP=75 GT:AD:DP:GQ:PL:SB 1:33,42,0:75:99:314,0,1409:15,18,16,26 +chrX 1914471 . T . . END=1916392 GT:DP:GQ:MIN_DP:PL 0:64:34:63:0,34 +chrX 1916393 . C . . END=1916393 GT:DP:GQ:MIN_DP:PL 0:35:0:35:0,0 +chrX 1916394 . C . . END=1916397 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,270 +chrX 1916398 . T . . END=1916402 GT:DP:GQ:MIN_DP:PL 0:32:0:32:0,0 +chrX 1916403 . T . . END=1916425 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,765 +chrX 1916426 . T . . END=1916426 GT:DP:GQ:MIN_DP:PL 0:26:0:26:0,0 +chrX 1916427 . C . . END=1916489 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,311 +chrX 1916490 . G . . END=1916491 GT:DP:GQ:MIN_DP:PL 0:45:0:45:0,0 +chrX 1916492 . T . . END=1916664 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,391 +chrX 1916665 . C . . END=1916665 GT:DP:GQ:MIN_DP:PL 0:38:0:38:0,0 +chrX 1916666 . T . . END=1916782 GT:DP:GQ:MIN_DP:PL 0:42:99:42:0,155 +chrX 1916783 . C T, 1217.04 . AS_QUALapprox=|1227|0;AS_VarDP=1|37|0;BaseQRankSum=2.139;DP=40;MQRankSum=-0.448;QUALapprox=1227;RAW_GT_COUNT=0,0,1;RAW_MQandDP=132322,40;ReadPosRankSum=-1.460;VarDP=38 GT:AD:DP:GQ:PL:SB 1:1,37,0:38:99:1227,0,1237:0,1,18,19 +chrX 1916784 . G . . END=1917657 GT:DP:GQ:MIN_DP:PL 0:62:44:49:0,44 +chrX 1917658 . A AG, 1061.01 . AS_QUALapprox=|1071|0;AS_VarDP=0|38|0;DP=47;QUALapprox=1071;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;VarDP=38 GT:AD:DP:GQ:PL:SB 1:0,38,0:38:99:1071,0,1071:0,0,24,14 +chrX 1917659 . G . . END=1917733 GT:DP:GQ:MIN_DP:PL 0:43:99:43:0,1206 +chrX 1917734 . T C, 1578.04 . AS_QUALapprox=|1588|0;AS_VarDP=0|49|0;DP=50;QUALapprox=1588;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=49 GT:AD:DP:GQ:PL:SB 1:0,49,0:49:99:1588,0,1588:0,0,28,21 +chrX 1917735 . A . . END=1918306 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1514 +chrX 1918307 . G A, 174.04 . AS_QUALapprox=|184|0;AS_VarDP=31|35|0;BaseQRankSum=2.233;DP=67;MQRankSum=0.000;QUALapprox=184;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;ReadPosRankSum=-0.206;VarDP=66 GT:AD:DP:GQ:PL:SB 1:31,35,0:66:99:184,0,1151:19,12,22,13 +chrX 1918308 . C . . END=1918355 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1800 +chrX 1918356 . T C, 1992.04 . AS_QUALapprox=|2002|0;AS_VarDP=0|65|0;DP=67;QUALapprox=2002;RAW_GT_COUNT=0,0,1;RAW_MQandDP=240050,67;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,65,0:65:99:2002,0,2002:0,0,38,27 +chrX 1918357 . T . . END=1918993 GT:DP:GQ:MIN_DP:PL 0:51:29:50:0,29 +chrX 1918994 . A . . END=1918994 GT:DP:GQ:MIN_DP:PL 0:50:19:50:0,19 +chrX 1918995 . T . . END=1918997 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,238 +chrX 1918998 . A . . END=1918998 GT:DP:GQ:MIN_DP:PL 0:51:0:51:0,0 +chrX 1918999 . T . . END=1919816 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1429 +chrX 1919817 . AACAC A,AACACAC, 48.01 . AS_QUALapprox=|58|0|0;AS_VarDP=12|16|3|0;BaseQRankSum=-1.210;DP=50;MQRankSum=0.333;QUALapprox=58;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176609,50;ReadPosRankSum=0.974;VarDP=31 GT:AD:DP:GQ:PL:SB 1:12,16,3,0:31:58:58,0,341,552:7,5,8,11 +chrX 1919822 . A . . END=1919900 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,1334 +chrX 1919901 . T C, 39.04 . AS_QUALapprox=|49|0;AS_VarDP=24|26|0;BaseQRankSum=-0.486;DP=52;MQRankSum=0.000;QUALapprox=49;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;ReadPosRankSum=0.602;VarDP=50 GT:AD:DP:GQ:PL:SB 1:24,26,0:50:49:49,0,834:9,15,17,9 +chrX 1919902 . G . . END=1921337 GT:DP:GQ:MIN_DP:PL 0:63:29:63:0,29 +chrX 1921338 . C A, 172.04 . AS_QUALapprox=|182|0;AS_VarDP=30|34|0;BaseQRankSum=0.726;DP=67;MQRankSum=0.000;QUALapprox=182;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;ReadPosRankSum=-1.043;VarDP=64 GT:AD:DP:GQ:PL:SB 1:30,34,0:64:99:182,0,1102:16,14,20,14 +chrX 1921339 . C . . END=1921492 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1800 +chrX 1921493 . T C, 144.04 . AS_QUALapprox=|154|0;AS_VarDP=29|35|0;BaseQRankSum=-1.546;DP=67;MQRankSum=0.000;QUALapprox=154;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;ReadPosRankSum=1.916;VarDP=64 GT:AD:DP:GQ:PL:SB 1:29,35,0:64:99:154,0,1125:11,18,16,19 +chrX 1921494 . G . . END=1923124 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,917 +chrX 1923125 . C G, 1652.04 . AS_QUALapprox=|1662|0;AS_VarDP=0|52|0;DP=54;QUALapprox=1662;RAW_GT_COUNT=0,0,1;RAW_MQandDP=188723,54;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:1662,0,1662:0,0,26,26 +chrX 1923126 . T . . END=1925873 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,805 +chrX 1925874 . C T, 2313.04 . AS_QUALapprox=|2323|0;AS_VarDP=0|70|0;DP=74;QUALapprox=2323;RAW_GT_COUNT=0,0,1;RAW_MQandDP=265706,74;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,70,0:70:99:2323,0,2323:0,0,41,29 +chrX 1925875 . C . . END=1929321 GT:DP:GQ:MIN_DP:PL 0:59:61:55:0,61 +chrX 1929322 . C CT, 184.01 . AS_QUALapprox=|194|0;AS_VarDP=15|27|0;BaseQRankSum=-1.526;DP=56;MQRankSum=1.391;QUALapprox=194;RAW_GT_COUNT=0,0,1;RAW_MQandDP=197450,56;ReadPosRankSum=-0.342;VarDP=42 GT:AD:DP:GQ:PL:SB 1:15,27,0:42:99:194,0,503:6,9,17,10 +chrX 1929323 . T . . END=1929912 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1010 +chrX 1929913 . G A, 685.04 . AS_QUALapprox=|695|0;AS_VarDP=28|48|0;BaseQRankSum=1.031;DP=80;MQRankSum=0.000;QUALapprox=695;RAW_GT_COUNT=0,0,1;RAW_MQandDP=288000,80;ReadPosRankSum=-0.732;VarDP=76 GT:AD:DP:GQ:PL:SB 1:28,48,0:76:99:695,0,1608:15,13,24,24 +chrX 1929914 . T . . END=1930050 GT:DP:GQ:MIN_DP:PL 0:83:99:83:0,1800 +chrX 1930051 . T A, 471.04 . AS_QUALapprox=|481|0;AS_VarDP=33|48|0;BaseQRankSum=-0.286;DP=82;MQRankSum=0.000;QUALapprox=481;RAW_GT_COUNT=0,0,1;RAW_MQandDP=295200,82;ReadPosRankSum=1.543;VarDP=81 GT:AD:DP:GQ:PL:SB 1:33,48,0:81:99:481,0,1568:20,13,28,20 +chrX 1930052 . C . . END=1930179 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1737 +chrX 1930180 . T A, 151.04 . AS_QUALapprox=|161|0;AS_VarDP=24|28|0;BaseQRankSum=1.013;DP=54;MQRankSum=0.000;QUALapprox=161;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;ReadPosRankSum=1.579;VarDP=52 GT:AD:DP:GQ:PL:SB 1:24,28,0:52:99:161,0,943:14,10,13,15 +chrX 1930181 . G . . END=1930230 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,1544 +chrX 1930231 . C A, 248.04 . AS_QUALapprox=|258|0;AS_VarDP=23|32|0;BaseQRankSum=-1.046;DP=57;MQRankSum=0.000;QUALapprox=258;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;ReadPosRankSum=0.589;VarDP=55 GT:AD:DP:GQ:PL:SB 1:23,32,0:55:99:258,0,1037:12,11,15,17 +chrX 1930232 . T . . END=1930677 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1750 +chrX 1930678 . G A, 182.04 . AS_QUALapprox=|192|0;AS_VarDP=40|41|0;BaseQRankSum=3.094;DP=84;MQRankSum=0.000;QUALapprox=192;RAW_GT_COUNT=0,0,1;RAW_MQandDP=302400,84;ReadPosRankSum=1.578;VarDP=81 GT:AD:DP:GQ:PL:SB 1:40,41,0:81:99:192,0,1395:24,16,17,24 +chrX 1930679 . T . . END=1931193 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,481 +chrX 1931194 . A C, 55.04 . AS_QUALapprox=|65|0;AS_VarDP=30|31|0;BaseQRankSum=1.061;DP=63;MQRankSum=-0.951;QUALapprox=65;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226225,63;ReadPosRankSum=1.068;VarDP=61 GT:AD:DP:GQ:PL:SB 1:30,31,0:61:65:65,0,1038:14,16,20,11 +chrX 1931195 . C . . END=1932354 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,148 +chrX 1932355 . T C, 174.04 . AS_QUALapprox=|184|0;AS_VarDP=29|33|0;BaseQRankSum=1.328;DP=67;MQRankSum=0.000;QUALapprox=184;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;ReadPosRankSum=0.579;VarDP=62 GT:AD:DP:GQ:PL:SB 1:29,33,0:62:99:184,0,1116:18,11,18,15 +chrX 1932356 . T . . END=1933034 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,129 +chrX 1933035 . CA C,CAA,CAAA, 252.01 . AS_QUALapprox=|0|262|19|0;AS_VarDP=1|10|11|4|0;BaseQRankSum=-0.344;DP=66;MQRankSum=0.000;QUALapprox=262;RAW_GT_COUNT=0,0,1;RAW_MQandDP=232386,66;ReadPosRankSum=-0.302;VarDP=26 GT:AD:DP:GQ:PL:SB 2:1,10,11,4,0:26:99:262,369,0,243,395:1,0,16,9 +chrX 1933037 . A . . END=1933220 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,709 +chrX 1933221 . T TTCATTGAAGAAGGACAAGGAACTCTTGGCTTCAAAGA, 52.01 . AS_QUALapprox=|62|0;AS_VarDP=25|27|0;BaseQRankSum=-0.334;DP=57;MQRankSum=-1.347;QUALapprox=62;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201546,57;ReadPosRankSum=-2.912;VarDP=52 GT:AD:DP:GQ:PL:SB 1:25,27,0:52:62:62,0,1192:14,11,16,11 +chrX 1933222 . G . . END=1933690 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,745 +chrX 1933691 . CA C, 567.01 . AS_QUALapprox=|577|0;AS_VarDP=0|24|0;DP=37;QUALapprox=577;RAW_GT_COUNT=0,0,1;RAW_MQandDP=125204,37;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:577,0,577:0,0,14,10 +chrX 1933693 . A . . END=1934168 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,675 +chrX 1934169 . G C, 66.04 . AS_QUALapprox=|76|0;AS_VarDP=35|41|0;BaseQRankSum=-2.641;DP=78;MQRankSum=0.000;QUALapprox=76;RAW_GT_COUNT=0,0,1;RAW_MQandDP=280800,78;ReadPosRankSum=-0.031;VarDP=76 GT:AD:DP:GQ:PL:SB 1:35,41,0:76:76:76,0,1232:17,18,22,19 +chrX 1934170 . G . . END=1934343 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1632 +chrX 1934344 . A G, 377.04 . AS_QUALapprox=|387|0;AS_VarDP=29|41|0;BaseQRankSum=0.765;DP=72;MQRankSum=0.000;QUALapprox=387;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;ReadPosRankSum=0.596;VarDP=70 GT:AD:DP:GQ:PL:SB 1:29,41,0:70:99:387,0,1295:13,16,20,21 +chrX 1934345 . T . . END=1934547 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1705 +chrX 1934548 . T C, 302.04 . AS_QUALapprox=|312|0;AS_VarDP=28|39|0;BaseQRankSum=-0.113;DP=70;MQRankSum=0.000;QUALapprox=312;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;ReadPosRankSum=-0.401;VarDP=67 GT:AD:DP:GQ:PL:SB 1:28,39,0:67:99:312,0,1154:10,18,20,19 +chrX 1934549 . G . . END=1935396 GT:DP:GQ:MIN_DP:PL 0:48:39:44:0,39 +chrX 1935397 . G T, 63.04 . AS_QUALapprox=|73|0;AS_VarDP=31|31|0;BaseQRankSum=1.376;DP=64;MQRankSum=0.000;QUALapprox=73;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;ReadPosRankSum=0.578;VarDP=62 GT:AD:DP:GQ:PL:SB 1:31,31,0:62:73:73,0,1032:16,15,18,13 +chrX 1935398 . G . . END=1936552 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,129 +chrX 1936553 . C . . END=1936553 GT:DP:GQ:MIN_DP:PL 0:54:17:54:0,17 +chrX 1936554 . T . . END=1936888 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,931 +chrX 1936889 . T C, 176.04 . AS_QUALapprox=|186|0;AS_VarDP=29|35|0;BaseQRankSum=-0.162;DP=69;MQRankSum=0.000;QUALapprox=186;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;ReadPosRankSum=-0.358;VarDP=64 GT:AD:DP:GQ:PL:SB 1:29,35,0:64:99:186,0,1161:14,15,15,20 +chrX 1936890 . T . . END=1936994 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1800 +chrX 1936995 . G A, 221.04 . AS_QUALapprox=|231|0;AS_VarDP=28|36|0;BaseQRankSum=-0.230;DP=66;MQRankSum=0.000;QUALapprox=231;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;ReadPosRankSum=0.711;VarDP=64 GT:AD:DP:GQ:PL:SB 1:28,36,0:64:99:231,0,1124:13,15,20,16 +chrX 1936996 . A . . END=1937297 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1422 +chrX 1937298 . G T, 175.04 . AS_QUALapprox=|185|0;AS_VarDP=24|27|0;BaseQRankSum=3.018;DP=53;MQRankSum=0.084;QUALapprox=185;RAW_GT_COUNT=0,0,1;RAW_MQandDP=189220,53;ReadPosRankSum=-0.132;VarDP=51 GT:AD:DP:GQ:PL:SB 1:24,27,0:51:99:185,0,929:9,15,12,15 +chrX 1937299 . C . . END=1937452 GT:DP:GQ:MIN_DP:PL 0:42:99:42:0,1052 +chrX 1937453 . G A, 528.04 . AS_QUALapprox=|538|0;AS_VarDP=12|29|0;BaseQRankSum=-1.588;DP=43;MQRankSum=0.729;QUALapprox=538;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154106,43;ReadPosRankSum=0.879;VarDP=41 GT:AD:DP:GQ:PL:SB 1:12,29,0:41:99:538,0,923:10,2,14,15 +chrX 1937454 . A . . END=1938119 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,1121 +chrX 1938120 . A T, 344.04 . AS_QUALapprox=|354|0;AS_VarDP=23|35|0;BaseQRankSum=-0.768;DP=59;MQRankSum=0.000;QUALapprox=354;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;ReadPosRankSum=-0.318;VarDP=58 GT:AD:DP:GQ:PL:SB 1:23,35,0:58:99:354,0,1110:14,9,21,14 +chrX 1938121 . A . . END=1940153 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,149 +chrX 1940154 . T C, 269.04 . AS_QUALapprox=|279|0;AS_VarDP=28|34|0;BaseQRankSum=1.741;DP=64;MQRankSum=0.000;QUALapprox=279;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;ReadPosRankSum=0.453;VarDP=62 GT:AD:DP:GQ:PL:SB 1:28,34,0:62:99:279,0,1142:15,13,17,17 +chrX 1940155 . G . . END=1940282 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1800 +chrX 1940283 . A G, 26.04 . AS_QUALapprox=|36|0;AS_VarDP=36|35|0;BaseQRankSum=2.471;DP=74;MQRankSum=0.000;QUALapprox=36;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;ReadPosRankSum=0.000;VarDP=71 GT:AD:DP:GQ:PL:SB 1:36,35,0:71:36:36,0,1196:19,17,18,17 +chrX 1940284 . A . . END=1940815 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1776 +chrX 1940816 . C T, 115.04 . AS_QUALapprox=|125|0;AS_VarDP=29|31|0;BaseQRankSum=1.460;DP=61;MQRankSum=0.000;QUALapprox=125;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;ReadPosRankSum=1.176;VarDP=60 GT:AD:DP:GQ:PL:SB 1:29,31,0:60:99:125,0,1038:14,15,16,15 +chrX 1940817 . T . . END=1942244 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,202 +chrX 1942245 . T G, 422.04 . AS_QUALapprox=|432|0;AS_VarDP=31|44|0;BaseQRankSum=-0.082;DP=80;MQRankSum=0.000;QUALapprox=432;RAW_GT_COUNT=0,0,1;RAW_MQandDP=288000,80;ReadPosRankSum=-0.393;VarDP=75 GT:AD:DP:GQ:PL:SB 1:31,44,0:75:99:432,0,1470:14,17,20,24 +chrX 1942246 . T . . END=1942502 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,794 +chrX 1942503 . CAA C, 49.01 . AS_QUALapprox=|59|0;AS_VarDP=3|6|0;BaseQRankSum=0.366;DP=23;MQRankSum=0.000;QUALapprox=59;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;ReadPosRankSum=-1.242;VarDP=9 GT:AD:DP:GQ:PL:SB 1:3,6,0:9:59:59,0,150:2,1,6,0 +chrX 1942506 . A . . END=1943232 GT:DP:GQ:MIN_DP:PL 0:76:99:76:0,405 +chrX 1943233 . C T, 213.04 . AS_QUALapprox=|223|0;AS_VarDP=29|37|0;BaseQRankSum=-0.840;DP=70;MQRankSum=0.000;QUALapprox=223;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;ReadPosRankSum=-0.233;VarDP=66 GT:AD:DP:GQ:PL:SB 1:29,37,0:66:99:223,0,1191:14,15,16,21 +chrX 1943234 . T . . END=1946626 GT:DP:GQ:MIN_DP:PL 0:74:50:54:0,50 +chrX 1946627 . C . . END=1946627 GT:DP:GQ:MIN_DP:PL 0:56:0:56:0,0 +chrX 1946628 . A . . END=1946858 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1594 +chrX 1946859 . A AATATATTT, 11 . AS_QUALapprox=|21|0;AS_VarDP=28|29|0;BaseQRankSum=0.419;DP=64;MQRankSum=0.000;QUALapprox=21;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;ReadPosRankSum=-1.613;VarDP=57 GT:AD:DP:GQ:PL:SB 1:28,29,0:57:21:21,0,1283:16,12,15,14 +chrX 1946860 . A . . END=1947454 GT:DP:GQ:MIN_DP:PL 0:59:35:53:0,35 +chrX 1947455 . A G, 209.04 . AS_QUALapprox=|219|0;AS_VarDP=16|21|0;BaseQRankSum=-1.136;DP=39;MQRankSum=-0.920;QUALapprox=219;RAW_GT_COUNT=0,0,1;RAW_MQandDP=124979,39;ReadPosRankSum=-0.552;VarDP=37 GT:AD:DP:GQ:PL:SB 1:16,21,0:37:99:219,0,908:9,7,6,15 +chrX 1947456 . T . . END=1947456 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,1080 +chrX 1947457 . A G, 209.04 . AS_QUALapprox=|219|0;AS_VarDP=16|21|0;BaseQRankSum=-1.767;DP=38;MQRankSum=-0.920;QUALapprox=219;RAW_GT_COUNT=0,0,1;RAW_MQandDP=121379,38;ReadPosRankSum=-1.148;VarDP=37 GT:AD:DP:GQ:PL:SB 1:16,21,0:37:99:219,0,907:9,7,6,15 +chrX 1947458 . T . . END=1947459 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,1072 +chrX 1947460 . TATATATATATATAC T, 132.01 . AS_QUALapprox=|142|0;AS_VarDP=15|19|0;BaseQRankSum=-1.189;DP=35;MQRankSum=-0.851;QUALapprox=142;RAW_GT_COUNT=0,0,1;RAW_MQandDP=106579,35;ReadPosRankSum=-1.002;VarDP=34 GT:AD:DP:GQ:PL:SB 1:15,19,0:34:99:142,0,817:8,7,6,13 +chrX 1947475 . A . . END=1947478 GT:DP:GQ:MIN_DP:PL 0:35:0:35:0,0 +chrX 1947479 . A . . END=1948099 GT:DP:GQ:MIN_DP:PL 0:2:20:1:0,20 +chrX 1948100 . A . . END=1948100 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1948101 . G . . END=1948152 GT:DP:GQ:MIN_DP:PL 0:2:35:1:0,35 +chrX 1948153 . A . . END=1948153 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 1948154 . G . . END=1949233 GT:DP:GQ:MIN_DP:PL 0:13:45:13:0,45 +chrX 1949234 . T . . END=2132996 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 2132997 . T . . END=2132998 GT:DP:GQ:MIN_DP:PL 0:2:70:2:0,70 +chrX 2132999 . T . . END=2132999 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 2133000 . G . . END=2133007 GT:DP:GQ:MIN_DP:PL 0:2:70:2:0,70 +chrX 2133008 . A . . END=2133008 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 2133009 . T . . END=2133009 GT:DP:GQ:MIN_DP:PL 0:2:70:2:0,70 +chrX 2133010 . A . . END=2133010 GT:DP:GQ:MIN_DP:PL 0:4:0:4:0,0 +chrX 2133011 . T . . END=2133137 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 2133138 . G . . END=2133327 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 2133328 . G . . END=2133482 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 2133483 . C . . END=2133483 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 2133484 . A . . END=2133486 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 2133487 . G . . END=2133487 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 2133488 . G . . END=2133624 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 2133625 . G . . END=2133625 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 2133626 . A . . END=2133644 GT:DP:GQ:MIN_DP:PL 0:2:39:2:0,39 +chrX 2133645 . A . . END=2133652 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 2133653 . G . . END=2133667 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 2133668 . G . . END=2133668 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 2133669 . A . . END=2133753 GT:DP:GQ:MIN_DP:PL 0:2:24:1:0,24 +chrX 2133754 . A . . END=2133754 GT:DP:GQ:MIN_DP:PL 0:3:0:3:0,0 +chrX 2133755 . G . . END=2133756 GT:DP:GQ:MIN_DP:PL 0:3:45:3:0,45 +chrX 2133757 . A . . END=2133757 GT:DP:GQ:MIN_DP:PL 0:3:0:3:0,0 +chrX 2133758 . G . . END=2133759 GT:DP:GQ:MIN_DP:PL 0:3:45:3:0,45 +chrX 2133760 . T . . END=2133796 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 2133797 . G . . END=2133826 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 2133827 . G . . END=2133885 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 2133886 . G . . END=2133886 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 2133887 . A . . END=2133888 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 2133889 . G . . END=2133890 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 2133891 . A . . END=2133891 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 2133892 . G . . END=2133893 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 2133894 . G . . END=2133894 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 2133895 . G . . END=2133895 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 2133896 . A . . END=2133900 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 2133901 . G . . END=2133909 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 2133910 . G . . END=2133910 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 2133911 . G . . END=2133914 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 2133915 . G . . END=2133915 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 2133916 . A . . END=2133919 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 2133920 . G . . END=2133922 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 2133923 . G . . END=2133924 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 2133925 . G . . END=2133925 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 2133926 . G . . END=2133926 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 2133927 . A . . END=2133927 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 2133928 . G . . END=2133945 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 2133946 . A . . END=2133994 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 2133995 . G . . END=2137068 GT:DP:GQ:MIN_DP:PL 0:30:35:1:0,35 +chrX 2137069 . TACCATCATCATCACCATCCTC T, 397.01 . AS_QUALapprox=|407|0;AS_VarDP=19|29|0;BaseQRankSum=-1.171;DP=59;MQRankSum=-0.767;QUALapprox=407;RAW_GT_COUNT=0,0,1;RAW_MQandDP=211716,59;ReadPosRankSum=0.317;VarDP=48 GT:AD:DP:GQ:PL:SB 1:19,29,0:48:99:407,0,1262:8,11,11,18 +chrX 2137091 . A . . END=2137374 GT:DP:GQ:MIN_DP:PL 0:37:99:37:0,180 +chrX 2137375 . C . . END=2137488 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 2137489 . T . . END=2138697 GT:DP:GQ:MIN_DP:PL 0:57:70:57:0,70 +chrX 2138698 . G . . END=2138698 GT:DP:GQ:MIN_DP:PL 0:25:0:25:0,0 +chrX 2138699 . C . . END=2141227 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,224 +chrX 2141228 . AAGATAGAT A,AAGAT, 1107.01 . AS_QUALapprox=|1117|1052|0;AS_VarDP=0|27|24|0;DP=66;QUALapprox=1117;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=51 GT:AD:DP:GQ:PL:SB 1:0,27,24,0:51:65:1117,0,65,1148:0,0,23,28 +chrX 2141237 . A . . END=2144077 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1192 +chrX 2144078 . C G, 2014.04 . AS_QUALapprox=|2024|0;AS_VarDP=0|63|0;DP=65;QUALapprox=2024;RAW_GT_COUNT=0,0,1;RAW_MQandDP=233425,65;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,63,0:63:99:2024,0,2024:0,0,28,35 +chrX 2144079 . C . . END=2146596 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1240 +chrX 2146597 . A G, 1746.04 . AS_QUALapprox=|1756|0;AS_VarDP=0|55|0;DP=55;QUALapprox=1756;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:1756,0,1756:0,0,29,26 +chrX 2146598 . G . . END=2150825 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,586 +chrX 2150826 . AT A, 2793.01 . AS_QUALapprox=|2803|0;AS_VarDP=0|63|0;DP=66;QUALapprox=2803;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,63,0:63:99:2803,0,2803:0,0,32,31 +chrX 2150828 . T . . END=2150831 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1800 +chrX 2150832 . T C, 2828.04 . AS_QUALapprox=|2838|0;AS_VarDP=0|64|0;DP=65;QUALapprox=2838;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,64,0:64:99:2838,0,2838:0,0,33,31 +chrX 2150833 . T . . END=2156423 GT:DP:GQ:MIN_DP:PL 0:55:51:49:0,51 +chrX 2156424 . G *,A, 36.79 . AS_QUALapprox=|0|1026|0;AS_VarDP=0|17|20|0;DP=49;QUALapprox=1026;RAW_GT_COUNT=0,0,1;RAW_MQandDP=174400,49;VarDP=37 GT:AD:DP:GQ:PL:SB 2:0,17,20,0:37:17:1026,17,0,759:0,0,17,20 +chrX 2156425 . G . . END=2156520 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1482 +chrX 2156521 . T G, 1559.04 . AS_QUALapprox=|1569|0;AS_VarDP=1|48|0;BaseQRankSum=-0.269;DP=50;MQRankSum=0.000;QUALapprox=1569;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;ReadPosRankSum=-0.212;VarDP=49 GT:AD:DP:GQ:PL:SB 1:1,48,0:49:99:1569,0,1603:0,1,25,23 +chrX 2156522 . T . . END=2156832 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,659 +chrX 2156833 . C T, 110.04 . AS_QUALapprox=|120|0;AS_VarDP=44|45|0;BaseQRankSum=1.694;DP=90;MQRankSum=-0.514;QUALapprox=120;RAW_GT_COUNT=0,0,1;RAW_MQandDP=286454,90;ReadPosRankSum=0.439;VarDP=89 GT:AD:DP:GQ:PL:SB 1:44,45,0:89:99:120,0,1448:21,23,20,25 +chrX 2156834 . G . . END=2156879 GT:DP:GQ:MIN_DP:PL 0:77:99:77:0,134 +chrX 2156880 . C . . END=2156880 GT:DP:GQ:MIN_DP:PL 0:63:0:63:0,0 +chrX 2156881 . A . . END=2156887 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1800 +chrX 2156888 . A . . END=2156888 GT:DP:GQ:MIN_DP:PL 0:63:0:63:0,0 +chrX 2156889 . A . . END=2156932 GT:DP:GQ:MIN_DP:PL 0:61:58:59:0,58 +chrX 2156933 . A G, 2422.04 . AS_QUALapprox=|2432|0;AS_VarDP=0|57|0;DP=57;QUALapprox=2432;RAW_GT_COUNT=0,0,1;RAW_MQandDP=139655,57;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:2432,0,2432:0,0,27,30 +chrX 2156934 . T . . END=2156940 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1792 +chrX 2156941 . C T, 2481.04 . AS_QUALapprox=|2491|0;AS_VarDP=0|59|0;DP=59;QUALapprox=2491;RAW_GT_COUNT=0,0,1;RAW_MQandDP=146855,59;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:2491,0,2491:0,0,30,29 +chrX 2156942 . A . . END=2156953 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1703 +chrX 2156954 . A AT, 2115.01 . AS_QUALapprox=|2125|0;AS_VarDP=0|53|0;DP=57;QUALapprox=2125;RAW_GT_COUNT=0,0,1;RAW_MQandDP=143046,57;VarDP=53 GT:AD:DP:GQ:PL:SB 1:0,53,0:53:99:2125,0,2125:0,0,27,26 +chrX 2156955 . A . . END=2157065 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1493 +chrX 2157066 . G C, 1603.04 . AS_QUALapprox=|1613|0;AS_VarDP=0|50|0;DP=52;QUALapprox=1613;RAW_GT_COUNT=0,0,1;RAW_MQandDP=186625,52;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,50,0:50:99:1613,0,1613:0,0,29,21 +chrX 2157067 . T . . END=2157343 GT:DP:GQ:MIN_DP:PL 0:73:99:73:0,992 +chrX 2157344 . C G, 223.04 . AS_QUALapprox=|233|0;AS_VarDP=29|38|0;BaseQRankSum=-1.671;DP=68;MQRankSum=0.000;QUALapprox=233;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;ReadPosRankSum=0.335;VarDP=67 GT:AD:DP:GQ:PL:SB 1:29,38,0:67:99:233,0,1201:15,14,19,19 +chrX 2157345 . T . . END=2157576 GT:DP:GQ:MIN_DP:PL 0:73:99:73:0,1800 +chrX 2157577 . C G, 0.04 . AS_QUALapprox=|5|0;AS_VarDP=40|39|0;BaseQRankSum=1.207;DP=81;MQRankSum=-0.987;QUALapprox=5;RAW_GT_COUNT=0,0,1;RAW_MQandDP=289025,81;ReadPosRankSum=0.142;VarDP=79 GT:AD:DP:GQ:PL:SB 1:40,39,0:79:5:5,0,1316:15,25,27,12 +chrX 2157578 . T . . END=2157702 GT:DP:GQ:MIN_DP:PL 0:73:99:73:0,1800 +chrX 2157703 . C T, 838.04 . AS_QUALapprox=|848|0;AS_VarDP=26|53|0;BaseQRankSum=-1.167;DP=81;MQRankSum=0.000;QUALapprox=848;RAW_GT_COUNT=0,0,1;RAW_MQandDP=291600,81;ReadPosRankSum=-0.151;VarDP=79 GT:AD:DP:GQ:PL:SB 1:26,53,0:79:99:848,0,1722:13,13,23,30 +chrX 2157704 . A . . END=2157887 GT:DP:GQ:MIN_DP:PL 0:78:99:78:0,1800 +chrX 2157888 . G C, 2103.04 . AS_QUALapprox=|2113|0;AS_VarDP=0|66|0;DP=68;QUALapprox=2113;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;VarDP=66 GT:AD:DP:GQ:PL:SB 1:0,66,0:66:99:2113,0,2113:0,0,35,31 +chrX 2157889 . A . . END=2158100 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1760 +chrX 2158101 . C T, 318.04 . AS_QUALapprox=|328|0;AS_VarDP=23|33|0;BaseQRankSum=-0.206;DP=56;MQRankSum=0.285;QUALapprox=328;RAW_GT_COUNT=0,0,1;RAW_MQandDP=200450,56;ReadPosRankSum=0.533;VarDP=56 GT:AD:DP:GQ:PL:SB 1:23,33,0:56:99:328,0,1097:11,12,14,19 +chrX 2158102 . A . . END=2159202 GT:DP:GQ:MIN_DP:PL 0:62:48:60:0,48 +chrX 2159203 . C . . END=2159203 GT:DP:GQ:MIN_DP:PL 0:50:10:50:0,10 +chrX 2159204 . T . . END=2159641 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1564 +chrX 2159642 . G T, 34.04 . AS_QUALapprox=|44|0;AS_VarDP=33|34|0;BaseQRankSum=1.045;DP=73;MQRankSum=0.000;QUALapprox=44;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;ReadPosRankSum=0.439;VarDP=67 GT:AD:DP:GQ:PL:SB 1:33,34,0:67:44:44,0,1181:12,21,13,21 +chrX 2159643 . C . . END=2159675 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1800 +chrX 2159676 . G A, 31.04 . AS_QUALapprox=|41|0;AS_VarDP=33|35|0;BaseQRankSum=-1.548;DP=72;MQRankSum=0.000;QUALapprox=41;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;ReadPosRankSum=-1.350;VarDP=68 GT:AD:DP:GQ:PL:SB 1:33,35,0:68:41:41,0,1163:12,21,16,19 +chrX 2159677 . A . . END=2160553 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,164 +chrX 2160554 . C T, 24.04 . AS_QUALapprox=|34|0;AS_VarDP=30|31|0;BaseQRankSum=0.062;DP=65;MQRankSum=0.000;QUALapprox=34;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;ReadPosRankSum=-0.238;VarDP=61 GT:AD:DP:GQ:PL:SB 1:30,31,0:61:34:34,0,1036:13,17,17,14 +chrX 2160555 . G . . END=2160806 GT:DP:GQ:MIN_DP:PL 0:64:27:63:0,27 +chrX 2160807 . C T, 289.04 . AS_QUALapprox=|299|0;AS_VarDP=24|32|0;BaseQRankSum=1.251;DP=57;MQRankSum=0.000;QUALapprox=299;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;ReadPosRankSum=0.472;VarDP=56 GT:AD:DP:GQ:PL:SB 1:24,32,0:56:99:299,0,1092:12,12,15,17 +chrX 2160808 . G . . END=2160847 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,1459 +chrX 2160848 . G A, 249.04 . AS_QUALapprox=|259|0;AS_VarDP=19|26|0;BaseQRankSum=0.487;DP=45;MQRankSum=0.000;QUALapprox=259;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162000,45;ReadPosRankSum=-1.104;VarDP=45 GT:AD:DP:GQ:PL:SB 1:19,26,0:45:99:259,0,874:11,8,16,10 +chrX 2160849 . C . . END=2160891 GT:DP:GQ:MIN_DP:PL 0:39:99:39:0,1150 +chrX 2160892 . C CAAAAA, 137.01 . AS_QUALapprox=|147|0;AS_VarDP=18|23|0;BaseQRankSum=-1.286;DP=59;MQRankSum=0.000;QUALapprox=147;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;ReadPosRankSum=-2.056;VarDP=41 GT:AD:DP:GQ:PL:SB 1:18,23,0:41:99:147,0,917:13,5,11,12 +chrX 2160893 . A . . END=2161185 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,109 +chrX 2161186 . C . . END=2161186 GT:DP:GQ:MIN_DP:PL 0:64:15:64:0,15 +chrX 2161187 . T . . END=2161254 GT:DP:GQ:MIN_DP:PL 0:69:23:69:0,23 +chrX 2161255 . G A, 61.04 . AS_QUALapprox=|71|0;AS_VarDP=35|37|0;BaseQRankSum=1.536;DP=72;MQRankSum=0.000;QUALapprox=71;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;ReadPosRankSum=1.531;VarDP=72 GT:AD:DP:GQ:PL:SB 1:35,37,0:72:71:71,0,1624:19,16,20,17 +chrX 2161256 . G . . END=2161330 GT:DP:GQ:MIN_DP:PL 0:75:99:75:0,1800 +chrX 2161331 . G A, 290.04 . AS_QUALapprox=|300|0;AS_VarDP=34|42|0;BaseQRankSum=0.748;DP=76;MQRankSum=0.000;QUALapprox=300;RAW_GT_COUNT=0,0,1;RAW_MQandDP=273600,76;ReadPosRankSum=-0.522;VarDP=76 GT:AD:DP:GQ:PL:SB 1:34,42,0:76:99:300,0,1385:19,15,25,17 +chrX 2161332 . G . . END=2161369 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1800 +chrX 2161370 . C T, 559.04 . AS_QUALapprox=|569|0;AS_VarDP=28|41|0;BaseQRankSum=-0.734;DP=70;MQRankSum=0.000;QUALapprox=569;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;ReadPosRankSum=0.166;VarDP=69 GT:AD:DP:GQ:PL:SB 1:28,41,0:69:99:569,0,1798:14,14,25,16 +chrX 2161371 . T . . END=2161376 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1800 +chrX 2161377 . C G, 619.04 . AS_QUALapprox=|629|0;AS_VarDP=27|42|0;BaseQRankSum=-1.310;DP=69;MQRankSum=0.000;QUALapprox=629;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;ReadPosRankSum=0.125;VarDP=69 GT:AD:DP:GQ:PL:SB 1:27,42,0:69:99:629,0,1823:14,13,25,17 +chrX 2161378 . C . . END=2161442 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1800 +chrX 2161443 . A G, 325.04 . AS_QUALapprox=|335|0;AS_VarDP=25|37|0;BaseQRankSum=-1.016;DP=65;MQRankSum=0.000;QUALapprox=335;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;ReadPosRankSum=-1.873;VarDP=62 GT:AD:DP:GQ:PL:SB 1:25,37,0:62:99:335,0,1173:11,14,20,17 +chrX 2161444 . G . . END=2161666 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1800 +chrX 2161667 . T C, 106.04 . AS_QUALapprox=|116|0;AS_VarDP=32|34|0;BaseQRankSum=-0.194;DP=67;MQRankSum=0.000;QUALapprox=116;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;ReadPosRankSum=-0.083;VarDP=66 GT:AD:DP:GQ:PL:SB 1:32,34,0:66:99:116,0,1519:16,16,18,16 +chrX 2161668 . A . . END=2161670 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1800 +chrX 2161671 . C T, 136.04 . AS_QUALapprox=|146|0;AS_VarDP=31|34|0;BaseQRankSum=0.494;DP=67;MQRankSum=0.000;QUALapprox=146;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;ReadPosRankSum=-0.480;VarDP=65 GT:AD:DP:GQ:PL:SB 1:31,34,0:65:99:146,0,1519:16,15,18,16 +chrX 2161672 . G . . END=2161744 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1800 +chrX 2161745 . C T, 40.04 . AS_QUALapprox=|50|0;AS_VarDP=39|40|0;BaseQRankSum=0.128;DP=82;MQRankSum=0.000;QUALapprox=50;RAW_GT_COUNT=0,0,1;RAW_MQandDP=295200,82;ReadPosRankSum=0.711;VarDP=79 GT:AD:DP:GQ:PL:SB 1:39,40,0:79:50:50,0,1300:20,19,22,18 +chrX 2161746 . A . . END=2162710 GT:DP:GQ:MIN_DP:PL 0:63:23:49:0,23 +chrX 2162711 . C G, 260.04 . AS_QUALapprox=|270|0;AS_VarDP=22|30|0;BaseQRankSum=-0.215;DP=53;MQRankSum=0.000;QUALapprox=270;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;ReadPosRankSum=1.752;VarDP=52 GT:AD:DP:GQ:PL:SB 1:22,30,0:52:99:270,0,982:12,10,16,14 +chrX 2162712 . G . . END=2164043 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,164 +chrX 2164044 . CAA C,CA, 662.01 . AS_QUALapprox=|627|672|0;AS_VarDP=0|21|19|0;DP=58;QUALapprox=672;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=40 GT:AD:DP:GQ:PL:SB 2:0,21,19,0:40:45:672,45,0,616:0,0,17,23 +chrX 2164047 . A . . END=2165448 GT:DP:GQ:MIN_DP:PL 0:61:70:61:0,70 +chrX 2165449 . G A, 228.04 . AS_QUALapprox=|238|0;AS_VarDP=20|28|0;BaseQRankSum=0.138;DP=49;MQRankSum=0.000;QUALapprox=238;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;ReadPosRankSum=0.303;VarDP=48 GT:AD:DP:GQ:PL:SB 1:20,28,0:48:99:238,0,878:10,10,17,11 +chrX 2165450 . G . . END=2165479 GT:DP:GQ:MIN_DP:PL 0:47:99:47:0,1355 +chrX 2165480 . T C, 319.04 . AS_QUALapprox=|329|0;AS_VarDP=19|27|0;BaseQRankSum=-1.748;DP=46;MQRankSum=0.000;QUALapprox=329;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;ReadPosRankSum=0.402;VarDP=46 GT:AD:DP:GQ:PL:SB 1:19,27,0:46:99:329,0,1184:9,10,19,8 +chrX 2165481 . G . . END=2165483 GT:DP:GQ:MIN_DP:PL 0:44:99:44:0,1399 +chrX 2165484 . G A, 364.04 . AS_QUALapprox=|374|0;AS_VarDP=19|28|0;BaseQRankSum=1.344;DP=48;MQRankSum=0.000;QUALapprox=374;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;ReadPosRankSum=0.092;VarDP=47 GT:AD:DP:GQ:PL:SB 1:19,28,0:47:99:374,0,1229:9,10,20,8 +chrX 2165485 . C T, 305.04 . AS_QUALapprox=|315|0;AS_VarDP=19|26|0;BaseQRankSum=-0.084;DP=46;MQRankSum=0.000;QUALapprox=315;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;ReadPosRankSum=0.172;VarDP=45 GT:AD:DP:GQ:PL:SB 1:19,26,0:45:99:315,0,1170:9,10,18,8 +chrX 2165486 . G . . END=2165497 GT:DP:GQ:MIN_DP:PL 0:47:99:47:0,1514 +chrX 2165498 . C A, 283.04 . AS_QUALapprox=|293|0;AS_VarDP=20|28|0;BaseQRankSum=0.415;DP=49;MQRankSum=0.000;QUALapprox=293;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;ReadPosRankSum=0.303;VarDP=48 GT:AD:DP:GQ:PL:SB 1:20,28,0:48:99:293,0,953:9,11,18,10 +chrX 2165499 . T . . END=2165663 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,1409 +chrX 2165664 . G A, 135.04 . AS_QUALapprox=|145|0;AS_VarDP=21|23|0;BaseQRankSum=2.339;DP=47;MQRankSum=-0.538;QUALapprox=145;RAW_GT_COUNT=0,0,1;RAW_MQandDP=164163,47;ReadPosRankSum=0.294;VarDP=44 GT:AD:DP:GQ:PL:SB 1:21,23,0:44:99:145,0,780:6,15,5,18 +chrX 2165665 . C . . END=2165783 GT:DP:GQ:MIN_DP:PL 0:37:99:37:0,770 +chrX 2165784 . C CATCA, 441.01 . AS_QUALapprox=|451|0;AS_VarDP=5|15|0;BaseQRankSum=-0.755;DP=23;MQRankSum=-0.984;QUALapprox=451;RAW_GT_COUNT=0,0,1;RAW_MQandDP=73361,23;ReadPosRankSum=1.188;VarDP=20 GT:AD:DP:GQ:PL:SB 1:5,15,0:20:99:451,0,676:2,3,4,11 +chrX 2165785 . A . . END=2165825 GT:DP:GQ:MIN_DP:PL 0:17:99:17:0,135 +chrX 2165826 . T C, 395.04 . AS_QUALapprox=|405|0;AS_VarDP=1|10|0;BaseQRankSum=0.000;DP=14;MQRankSum=-0.404;QUALapprox=405;RAW_GT_COUNT=0,0,1;RAW_MQandDP=34931,14;ReadPosRankSum=1.645;VarDP=11 GT:AD:DP:GQ:PL:SB 1:1,10,0:11:99:405,0,450:1,0,3,7 +chrX 2165827 . A . . END=2165827 GT:DP:GQ:MIN_DP:PL 0:10:99:10:0,225 +chrX 2165828 . T C, 350.04 . AS_QUALapprox=|360|0;AS_VarDP=1|9|0;DP=13;MQRankSum=-0.385;QUALapprox=360;RAW_GT_COUNT=0,0,1;RAW_MQandDP=31331,13;VarDP=10 GT:AD:DP:GQ:PL:SB 1:1,9,0:10:99:360,0,405:1,0,2,7 +chrX 2165829 . A . . END=2165829 GT:DP:GQ:MIN_DP:PL 0:9:99:9:0,225 +chrX 2165830 . T C, 395.04 . AS_QUALapprox=|405|0;AS_VarDP=0|9|0;DP=12;QUALapprox=405;RAW_GT_COUNT=0,0,1;RAW_MQandDP=27731,12;VarDP=9 GT:AD:DP:GQ:PL:SB 1:0,9,0:9:99:405,0,405:0,0,2,7 +chrX 2165831 . A . . END=2165831 GT:DP:GQ:MIN_DP:PL 0:8:99:8:0,225 +chrX 2165832 . T C, 350.04 . AS_QUALapprox=|360|0;AS_VarDP=0|8|0;DP=11;QUALapprox=360;RAW_GT_COUNT=0,0,1;RAW_MQandDP=24131,11;VarDP=8 GT:AD:DP:GQ:PL:SB 1:0,8,0:8:99:360,0,360:0,0,2,6 +chrX 2165833 . A . . END=2165833 GT:DP:GQ:MIN_DP:PL 0:8:99:8:0,225 +chrX 2165834 . T C, 350.04 . AS_QUALapprox=|360|0;AS_VarDP=0|8|0;DP=11;QUALapprox=360;RAW_GT_COUNT=0,0,1;RAW_MQandDP=24131,11;VarDP=8 GT:AD:DP:GQ:PL:SB 1:0,8,0:8:99:360,0,360:0,0,2,6 +chrX 2165835 . A . . END=2165835 GT:DP:GQ:MIN_DP:PL 0:8:99:8:0,225 +chrX 2165836 . T C, 350.04 . AS_QUALapprox=|360|0;AS_VarDP=0|8|0;DP=11;QUALapprox=360;RAW_GT_COUNT=0,0,1;RAW_MQandDP=24131,11;VarDP=8 GT:AD:DP:GQ:PL:SB 1:0,8,0:8:99:360,0,360:0,0,2,6 +chrX 2165837 . A . . END=2165837 GT:DP:GQ:MIN_DP:PL 0:8:99:8:0,225 +chrX 2165838 . T C, 395.04 . AS_QUALapprox=|405|0;AS_VarDP=0|9|0;DP=12;QUALapprox=405;RAW_GT_COUNT=0,0,1;RAW_MQandDP=25155,12;VarDP=9 GT:AD:DP:GQ:PL:SB 1:0,9,0:9:99:405,0,405:0,0,3,6 +chrX 2165839 . A . . END=2165839 GT:DP:GQ:MIN_DP:PL 0:8:99:8:0,225 +chrX 2165840 . T C, 395.04 . AS_QUALapprox=|405|0;AS_VarDP=0|9|0;DP=12;QUALapprox=405;RAW_GT_COUNT=0,0,1;RAW_MQandDP=25155,12;VarDP=9 GT:AD:DP:GQ:PL:SB 1:0,9,0:9:99:405,0,405:0,0,3,6 +chrX 2165841 . A . . END=2165841 GT:DP:GQ:MIN_DP:PL 0:9:99:9:0,270 +chrX 2165842 . T C, 440.04 . AS_QUALapprox=|450|0;AS_VarDP=0|10|0;DP=13;QUALapprox=450;RAW_GT_COUNT=0,0,1;RAW_MQandDP=28755,13;VarDP=10 GT:AD:DP:GQ:PL:SB 1:0,10,0:10:99:450,0,450:0,0,3,7 +chrX 2165843 . A . . END=2165843 GT:DP:GQ:MIN_DP:PL 0:9:99:9:0,313 +chrX 2165844 . T C, 440.04 . AS_QUALapprox=|450|0;AS_VarDP=0|10|0;DP=13;QUALapprox=450;RAW_GT_COUNT=0,0,1;RAW_MQandDP=28755,13;VarDP=10 GT:AD:DP:GQ:PL:SB 1:0,10,0:10:99:450,0,450:0,0,3,7 +chrX 2165845 . A . . END=2165845 GT:DP:GQ:MIN_DP:PL 0:10:99:10:0,338 +chrX 2165846 . T C, 485.04 . AS_QUALapprox=|495|0;AS_VarDP=0|11|0;DP=14;QUALapprox=495;RAW_GT_COUNT=0,0,1;RAW_MQandDP=32355,14;VarDP=11 GT:AD:DP:GQ:PL:SB 1:0,11,0:11:99:495,0,495:0,0,4,7 +chrX 2165847 . ATATGTG A, 485.01 . AS_QUALapprox=|495|0;AS_VarDP=0|11|0;DP=14;QUALapprox=495;RAW_GT_COUNT=0,0,1;RAW_MQandDP=32355,14;VarDP=11 GT:AD:DP:GQ:PL:SB 1:0,11,0:11:99:495,0,495:0,0,4,7 +chrX 2165854 . T C, 485.04 . AS_QUALapprox=|495|0;AS_VarDP=0|11|0;DP=14;QUALapprox=495;RAW_GT_COUNT=0,0,1;RAW_MQandDP=32355,14;VarDP=11 GT:AD:DP:GQ:PL:SB 1:0,11,0:11:99:495,0,495:0,0,4,7 +chrX 2165855 . A . . END=2165861 GT:DP:GQ:MIN_DP:PL 0:10:99:10:0,278 +chrX 2165862 . T C, 530.04 . AS_QUALapprox=|540|0;AS_VarDP=0|12|0;DP=15;QUALapprox=540;RAW_GT_COUNT=0,0,1;RAW_MQandDP=33444,15;VarDP=12 GT:AD:DP:GQ:PL:SB 1:0,12,0:12:99:540,0,540:0,0,6,6 +chrX 2165863 . A . . END=2165863 GT:DP:GQ:MIN_DP:PL 0:9:99:9:0,223 +chrX 2165864 . T C, 485.04 . AS_QUALapprox=|495|0;AS_VarDP=0|11|0;DP=14;QUALapprox=495;RAW_GT_COUNT=0,0,1;RAW_MQandDP=29844,14;VarDP=11 GT:AD:DP:GQ:PL:SB 1:0,11,0:11:99:495,0,495:0,0,6,5 +chrX 2165865 . A . . END=2165865 GT:DP:GQ:MIN_DP:PL 0:11:99:11:0,382 +chrX 2165866 . T C, 485.04 . AS_QUALapprox=|495|0;AS_VarDP=0|11|0;DP=14;QUALapprox=495;RAW_GT_COUNT=0,0,1;RAW_MQandDP=29844,14;VarDP=11 GT:AD:DP:GQ:PL:SB 1:0,11,0:11:99:495,0,495:0,0,6,5 +chrX 2165867 . A . . END=2165867 GT:DP:GQ:MIN_DP:PL 0:11:99:11:0,382 +chrX 2165868 . CGT C, 485.01 . AS_QUALapprox=|495|0;AS_VarDP=0|11|0;DP=14;QUALapprox=495;RAW_GT_COUNT=0,0,1;RAW_MQandDP=29844,14;VarDP=11 GT:AD:DP:GQ:PL:SB 1:0,11,0:11:99:495,0,495:0,0,6,5 +chrX 2165871 . A . . END=2165872 GT:DP:GQ:MIN_DP:PL 0:11:99:11:0,272 +chrX 2165873 . ATATATATATGT A, 485.01 . AS_QUALapprox=|495|0;AS_VarDP=0|11|0;DP=14;QUALapprox=495;RAW_GT_COUNT=0,0,1;RAW_MQandDP=29844,14;VarDP=11 GT:AD:DP:GQ:PL:SB 1:0,11,0:11:99:495,0,495:0,0,6,5 +chrX 2165885 . A C, 485.04 . AS_QUALapprox=|495|0;AS_VarDP=0|11|0;DP=13;QUALapprox=495;RAW_GT_COUNT=0,0,1;RAW_MQandDP=26819,13;VarDP=11 GT:AD:DP:GQ:PL:SB 1:0,11,0:11:99:495,0,495:0,0,6,5 +chrX 2165886 . T . . END=2165899 GT:DP:GQ:MIN_DP:PL 0:11:99:11:0,278 +chrX 2165900 . CACACACACA C, 440.01 . AS_QUALapprox=|450|0;AS_VarDP=2|12|0;DP=15;MQRankSum=-0.802;QUALapprox=450;RAW_GT_COUNT=0,0,1;RAW_MQandDP=39994,15;VarDP=14 GT:AD:DP:GQ:PL:SB 1:2,12,0:14:99:450,0,540:2,0,8,4 +chrX 2165910 . T . . END=2165912 GT:DP:GQ:MIN_DP:PL 0:14:99:14:0,382 +chrX 2165913 . ACACAC A, 485.01 . AS_QUALapprox=|495|0;AS_VarDP=2|13|0;BaseQRankSum=-0.204;DP=16;MQRankSum=-0.764;QUALapprox=495;RAW_GT_COUNT=0,0,1;RAW_MQandDP=43594,16;ReadPosRankSum=2.290;VarDP=15 GT:AD:DP:GQ:PL:SB 1:2,13,0:15:99:495,0,585:2,0,9,4 +chrX 2165918 . C CTGT, 485.01 . AS_QUALapprox=|495|0;AS_VarDP=2|13|0;DP=16;MQRankSum=-0.764;QUALapprox=495;RAW_GT_COUNT=0,0,1;RAW_MQandDP=43594,16;ReadPosRankSum=2.038;VarDP=15 GT:AD:DP:GQ:PL:SB 1:2,13,0:15:99:495,0,585:2,0,9,4 +chrX 2165919 . A . . END=2165922 GT:DP:GQ:MIN_DP:PL 0:15:99:15:0,417 +chrX 2165923 . AC A, 453.01 . AS_QUALapprox=|463|0;AS_VarDP=3|14|0;BaseQRankSum=0.000;DP=18;MQRankSum=-0.932;QUALapprox=463;RAW_GT_COUNT=0,0,1;RAW_MQandDP=50794,18;ReadPosRankSum=1.201;VarDP=17 GT:AD:DP:GQ:PL:SB 1:3,14,0:17:99:463,0,587:2,1,10,4 +chrX 2165925 . T . . END=2165928 GT:DP:GQ:MIN_DP:PL 0:15:99:15:0,501 +chrX 2165929 . T C, 330.04 . AS_QUALapprox=|340|0;AS_VarDP=4|12|0;BaseQRankSum=-0.738;DP=20;MQRankSum=-0.738;QUALapprox=340;RAW_GT_COUNT=0,0,1;RAW_MQandDP=64042,20;ReadPosRankSum=1.945;VarDP=16 GT:AD:DP:GQ:PL:SB 1:4,12,0:16:99:340,0,498:3,1,10,2 +chrX 2165930 . A . . END=2166055 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,323 +chrX 2166056 . C CTATA, 1109.01 . AS_QUALapprox=|1119|0;AS_VarDP=1|26|0;BaseQRankSum=-0.517;DP=32;MQRankSum=0.000;QUALapprox=1119;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;ReadPosRankSum=1.605;VarDP=27 GT:AD:DP:GQ:PL:SB 1:1,26,0:27:99:1119,0,1144:0,1,16,10 +chrX 2166057 . T . . END=2166087 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,685 +chrX 2166088 . G GAT,GATAT, 603.01 . AS_QUALapprox=|475|613|0;AS_VarDP=0|9|13|0;DP=32;QUALapprox=613;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=22 GT:AD:DP:GQ:PL:SB 2:0,9,13,0:22:99:613,138,0,530:0,0,11,11 +chrX 2166089 . A . . END=2166291 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,765 +chrX 2166292 . G T, 1077.04 . AS_QUALapprox=|1087|0;AS_VarDP=0|29|0;DP=33;QUALapprox=1087;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108612,33;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:1087,0,1087:0,0,16,13 +chrX 2166293 . G . . END=2166344 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,918 +chrX 2166345 . G . . END=2166347 GT:DP:GQ:MIN_DP:PL 0:30:0:30:0,0 +chrX 2166348 . T . . END=2166450 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,357 +chrX 2166451 . C . . END=2166451 GT:DP:GQ:MIN_DP:PL 0:25:0:25:0,0 +chrX 2166452 . T . . END=2166471 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,501 +chrX 2166472 . A . . END=2166472 GT:DP:GQ:MIN_DP:PL 0:34:0:34:0,0 +chrX 2166473 . T . . END=2166490 GT:DP:GQ:MIN_DP:PL 0:41:99:41:0,576 +chrX 2166491 . T . . END=2166491 GT:DP:GQ:MIN_DP:PL 0:44:2:44:0,2 +chrX 2166492 . A . . END=2166505 GT:DP:GQ:MIN_DP:PL 0:45:99:45:0,1155 +chrX 2166506 . A . . END=2166506 GT:DP:GQ:MIN_DP:PL 0:47:0:47:0,0 +chrX 2166507 . A . . END=2166513 GT:DP:GQ:MIN_DP:PL 0:45:99:45:0,1443 +chrX 2166514 . T . . END=2166514 GT:DP:GQ:MIN_DP:PL 0:46:0:46:0,0 +chrX 2166515 . A . . END=2166586 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,625 +chrX 2166587 . T C,TTC, 332.04 . AS_QUALapprox=|342|120|0;AS_VarDP=0|12|8|0;DP=21;QUALapprox=342;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75249,21;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,12,8,0:20:99:342,0,222,441:0,0,12,8 +chrX 2166588 . A . . END=2166684 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,104 +chrX 2166685 . ATGTG A,GTGTG, 1201.01 . AS_QUALapprox=|1211|763|0;AS_VarDP=0|27|17|0;DP=45;QUALapprox=1211;RAW_GT_COUNT=0,0,1;RAW_MQandDP=159683,45;VarDP=44 GT:AD:DP:GQ:PL:SB 1:0,27,17,0:44:99:1211,0,448,1213:0,0,26,18 +chrX 2166690 . T . . END=2166705 GT:DP:GQ:MIN_DP:PL 0:43:99:43:0,1385 +chrX 2166706 . TATATATACACAC T, 317.01 . AS_QUALapprox=|327|0;AS_VarDP=21|28|0;BaseQRankSum=-0.711;DP=52;MQRankSum=1.196;QUALapprox=327;RAW_GT_COUNT=0,0,1;RAW_MQandDP=185553,52;ReadPosRankSum=0.242;VarDP=49 GT:AD:DP:GQ:PL:SB 1:21,28,0:49:99:327,0,1261:13,8,15,13 +chrX 2166719 . A . . END=2167100 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1468 +chrX 2167101 . A AAT, 2.12 . AS_QUALapprox=|12|0;AS_VarDP=25|26|0;BaseQRankSum=1.149;DP=64;MQRankSum=0.000;QUALapprox=12;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;ReadPosRankSum=-0.792;VarDP=51 GT:AD:DP:GQ:PL:SB 1:25,26,0:51:12:12,0,956:7,18,12,14 +chrX 2167102 . A . . END=2167620 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,192 +chrX 2167621 . T C, 2306.04 . AS_QUALapprox=|2316|0;AS_VarDP=0|71|0;DP=72;QUALapprox=2316;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,71,0:71:99:2316,0,2316:0,0,28,43 +chrX 2167622 . G . . END=2167866 GT:DP:GQ:MIN_DP:PL 0:76:99:76:0,1800 +chrX 2167867 . G C, 10.05 . AS_QUALapprox=|20|0;AS_VarDP=37|38|0;BaseQRankSum=-0.639;DP=75;MQRankSum=-0.960;QUALapprox=20;RAW_GT_COUNT=0,0,1;RAW_MQandDP=269104,75;ReadPosRankSum=0.403;VarDP=75 GT:AD:DP:GQ:PL:SB 1:37,38,0:75:20:20,0,1211:19,18,19,19 +chrX 2167868 . A . . END=2168167 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,734 +chrX 2168168 . T A, 332.04 . AS_QUALapprox=|342|0;AS_VarDP=18|28|0;BaseQRankSum=0.973;DP=47;MQRankSum=0.000;QUALapprox=342;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;ReadPosRankSum=0.124;VarDP=46 GT:AD:DP:GQ:PL:SB 1:18,28,0:46:99:342,0,947:9,9,15,13 +chrX 2168169 . G . . END=2168310 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1563 +chrX 2168311 . G A, 41.04 . AS_QUALapprox=|51|0;AS_VarDP=34|34|0;BaseQRankSum=1.490;DP=68;MQRankSum=0.000;QUALapprox=51;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;ReadPosRankSum=0.018;VarDP=68 GT:AD:DP:GQ:PL:SB 1:34,34,0:68:51:51,0,1127:17,17,15,19 +chrX 2168312 . G . . END=2168369 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1698 +chrX 2168370 . T C, 184.04 . AS_QUALapprox=|194|0;AS_VarDP=22|27|0;BaseQRankSum=1.099;DP=54;MQRankSum=0.000;QUALapprox=194;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;ReadPosRankSum=0.523;VarDP=49 GT:AD:DP:GQ:PL:SB 1:22,27,0:49:99:194,0,908:9,13,13,14 +chrX 2168371 . G . . END=2169328 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,282 +chrX 2169329 . A AT, 109.01 . AS_QUALapprox=|119|0;AS_VarDP=15|22|0;BaseQRankSum=-1.571;DP=51;MQRankSum=-0.771;QUALapprox=119;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183025,51;ReadPosRankSum=-2.569;VarDP=37 GT:AD:DP:GQ:PL:SB 1:15,22,0:37:99:119,0,425:7,8,5,17 +chrX 2169330 . T . . END=2169642 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,1017 +chrX 2169643 . G C, 0.04 . AS_QUALapprox=|5|0;AS_VarDP=16|16|0;BaseQRankSum=0.985;DP=36;MQRankSum=1.063;QUALapprox=5;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129025,36;ReadPosRankSum=-1.772;VarDP=32 GT:AD:DP:GQ:PL:SB 1:16,16,0:32:5:5,0,531:6,10,11,5 +chrX 2169644 . T . . END=2169692 GT:DP:GQ:MIN_DP:PL 0:37:99:37:0,958 +chrX 2169693 . T C, 1657.04 . AS_QUALapprox=|1667|0;AS_VarDP=0|50|0;DP=51;QUALapprox=1667;RAW_GT_COUNT=0,0,1;RAW_MQandDP=181025,51;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,50,0:50:99:1667,0,1667:0,0,19,31 +chrX 2169694 . C . . END=2169751 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,1459 +chrX 2169752 . T C, 1527.04 . AS_QUALapprox=|1537|0;AS_VarDP=0|48|0;DP=50;QUALapprox=1537;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=48 GT:AD:DP:GQ:PL:SB 1:0,48,0:48:99:1537,0,1537:0,0,18,30 +chrX 2169753 . G . . END=2169830 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1373 +chrX 2169831 . C CT, 321.01 . AS_QUALapprox=|331|0;AS_VarDP=7|25|0;BaseQRankSum=0.835;DP=51;MQRankSum=1.086;QUALapprox=331;RAW_GT_COUNT=0,0,1;RAW_MQandDP=181025,51;ReadPosRankSum=0.502;VarDP=32 GT:AD:DP:GQ:PL:SB 1:7,25,0:32:99:331,0,445:2,5,18,7 +chrX 2169832 . T . . END=2170321 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,196 +chrX 2170322 . G A, 199.04 . AS_QUALapprox=|209|0;AS_VarDP=26|31|0;BaseQRankSum=1.129;DP=58;MQRankSum=0.000;QUALapprox=209;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;ReadPosRankSum=2.700;VarDP=57 GT:AD:DP:GQ:PL:SB 1:26,31,0:57:99:209,0,1058:11,15,12,19 +chrX 2170323 . C . . END=2170357 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1800 +chrX 2170358 . A C, 2041.04 . AS_QUALapprox=|2051|0;AS_VarDP=0|64|0;DP=66;QUALapprox=2051;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,64,0:64:99:2051,0,2051:0,0,27,37 +chrX 2170359 . C . . END=2170464 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1800 +chrX 2170465 . ATGTGTG A,ATG, 1572.01 . AS_QUALapprox=|1582|1393|0;AS_VarDP=1|32|26|0;DP=67;MQRankSum=0.000;QUALapprox=1582;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=59 GT:AD:DP:GQ:PL:SB 1:1,32,26,0:59:99:1582,0,189,1389:1,0,26,32 +chrX 2170472 . T . . END=2170736 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1692 +chrX 2170737 . T C, 1582.04 . AS_QUALapprox=|1592|0;AS_VarDP=0|52|0;DP=55;QUALapprox=1592;RAW_GT_COUNT=0,0,1;RAW_MQandDP=197425,55;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:1592,0,1592:0,0,27,25 +chrX 2170738 . G . . END=2170913 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1612 +chrX 2170914 . CT C, 1332.01 . AS_QUALapprox=|1342|0;AS_VarDP=1|51|0;DP=65;MQRankSum=4.122;QUALapprox=1342;RAW_GT_COUNT=0,0,1;RAW_MQandDP=229617,65;VarDP=52 GT:AD:DP:GQ:PL:SB 1:1,51,0:52:99:1342,0,1352:1,0,28,23 +chrX 2170916 . T . . END=2174573 GT:DP:GQ:MIN_DP:PL 0:71:54:71:0,54 +chrX 2174574 . G GT, 212.01 . AS_QUALapprox=|222|0;AS_VarDP=12|21|0;BaseQRankSum=0.022;DP=40;MQRankSum=-0.396;QUALapprox=222;RAW_GT_COUNT=0,0,1;RAW_MQandDP=138129,40;ReadPosRankSum=-1.348;VarDP=33 GT:AD:DP:GQ:PL:SB 1:12,21,0:33:99:222,0,525:6,6,6,15 +chrX 2174575 . T . . END=2175248 GT:DP:GQ:MIN_DP:PL 0:54:80:54:0,80 +chrX 2175249 . T C, 49.04 . AS_QUALapprox=|59|0;AS_VarDP=24|27|0;BaseQRankSum=-1.368;DP=52;MQRankSum=0.000;QUALapprox=59;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;ReadPosRankSum=-0.652;VarDP=51 GT:AD:DP:GQ:PL:SB 1:24,27,0:51:59:59,0,828:13,11,15,12 +chrX 2175250 . G . . END=2175519 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1592 +chrX 2175520 . T C, 427.04 . AS_QUALapprox=|437|0;AS_VarDP=24|36|0;BaseQRankSum=0.284;DP=61;MQRankSum=0.000;QUALapprox=437;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;ReadPosRankSum=-0.008;VarDP=60 GT:AD:DP:GQ:PL:SB 1:24,36,0:60:99:437,0,1211:9,15,15,21 +chrX 2175521 . A . . END=2175574 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1800 +chrX 2175575 . T C, 402.04 . AS_QUALapprox=|412|0;AS_VarDP=33|45|0;BaseQRankSum=0.939;DP=78;MQRankSum=0.000;QUALapprox=412;RAW_GT_COUNT=0,0,1;RAW_MQandDP=280800,78;ReadPosRankSum=0.455;VarDP=78 GT:AD:DP:GQ:PL:SB 1:33,45,0:78:99:412,0,1469:17,16,24,21 +chrX 2175576 . G . . END=2176250 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1658 +chrX 2176251 . C T, 601.04 . AS_QUALapprox=|611|0;AS_VarDP=25|42|0;BaseQRankSum=1.607;DP=70;MQRankSum=0.000;QUALapprox=611;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;ReadPosRankSum=2.860;VarDP=67 GT:AD:DP:GQ:PL:SB 1:25,42,0:67:99:611,0,1420:13,12,20,22 +chrX 2176252 . G . . END=2176433 GT:DP:GQ:MIN_DP:PL 0:83:99:83:0,1800 +chrX 2176434 . A G, 139.04 . AS_QUALapprox=|149|0;AS_VarDP=42|46|0;BaseQRankSum=0.499;DP=91;MQRankSum=0.000;QUALapprox=149;RAW_GT_COUNT=0,0,1;RAW_MQandDP=327600,91;ReadPosRankSum=0.242;VarDP=88 GT:AD:DP:GQ:PL:SB 1:42,46,0:88:99:149,0,1489:23,19,22,24 +chrX 2176435 . C . . END=2177264 GT:DP:GQ:MIN_DP:PL 0:73:99:73:0,1524 +chrX 2177265 . G A, 482.04 . AS_QUALapprox=|492|0;AS_VarDP=18|32|0;BaseQRankSum=0.487;DP=51;MQRankSum=0.000;QUALapprox=492;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;ReadPosRankSum=-0.051;VarDP=50 GT:AD:DP:GQ:PL:SB 1:18,32,0:50:99:492,0,1072:7,11,17,15 +chrX 2177266 . A . . END=2177958 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,124 +chrX 2177959 . G T, 46.04 . AS_QUALapprox=|56|0;AS_VarDP=25|26|0;BaseQRankSum=1.826;DP=51;MQRankSum=1.485;QUALapprox=56;RAW_GT_COUNT=0,0,1;RAW_MQandDP=181189,51;ReadPosRankSum=-0.368;VarDP=51 GT:AD:DP:GQ:PL:SB 1:25,26,0:51:56:56,0,1169:8,17,11,15 +chrX 2177960 . C . . END=2177960 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,1712 +chrX 2177961 . C A, 46.04 . AS_QUALapprox=|56|0;AS_VarDP=25|26|0;BaseQRankSum=1.768;DP=51;MQRankSum=1.485;QUALapprox=56;RAW_GT_COUNT=0,0,1;RAW_MQandDP=181189,51;ReadPosRankSum=-0.283;VarDP=51 GT:AD:DP:GQ:PL:SB 1:25,26,0:51:56:56,0,1169:8,17,11,15 +chrX 2177962 . A . . END=2178647 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1131 +chrX 2178648 . TAC T,TCCACACACACAC, 336.01 . AS_QUALapprox=|295|346|0;AS_VarDP=2|13|23|0;BaseQRankSum=-0.384;DP=51;MQRankSum=-0.253;QUALapprox=346;RAW_GT_COUNT=0,0,1;RAW_MQandDP=179600,51;ReadPosRankSum=0.357;VarDP=38 GT:AD:DP:GQ:PL:SB 2:2,13,23,0:38:51:346,51,0,677:1,1,23,13 +chrX 2178651 . A . . END=2178695 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,1215 +chrX 2178696 . T C, 104.04 . AS_QUALapprox=|114|0;AS_VarDP=22|26|0;BaseQRankSum=2.250;DP=48;MQRankSum=-1.604;QUALapprox=114;RAW_GT_COUNT=0,0,1;RAW_MQandDP=166800,48;ReadPosRankSum=-0.594;VarDP=48 GT:AD:DP:GQ:PL:SB 1:22,26,0:48:99:114,0,1003:12,10,14,12 +chrX 2178697 . C . . END=2178817 GT:DP:GQ:MIN_DP:PL 0:45:99:45:0,1135 +chrX 2178818 . CT C, 47.01 . AS_QUALapprox=|57|0;AS_VarDP=15|17|0;BaseQRankSum=1.127;DP=41;MQRankSum=0.000;QUALapprox=57;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147600,41;ReadPosRankSum=-0.322;VarDP=32 GT:AD:DP:GQ:PL:SB 1:15,17,0:32:57:57,0,443:10,5,14,3 +chrX 2178820 . T . . END=2180853 GT:DP:GQ:MIN_DP:PL 0:59:44:57:0,44 +chrX 2180854 . GTATC G, 75.01 . AS_QUALapprox=|85|0;AS_VarDP=28|30|0;BaseQRankSum=-1.689;DP=68;MQRankSum=0.000;QUALapprox=85;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;ReadPosRankSum=0.072;VarDP=58 GT:AD:DP:GQ:PL:SB 1:28,30,0:58:85:85,0,1345:15,13,16,14 +chrX 2180859 . T . . END=2181151 GT:DP:GQ:MIN_DP:PL 0:80:99:80:0,1485 +chrX 2181152 . A . . END=2181152 GT:DP:GQ:MIN_DP:PL 0:74:10:74:0,10 +chrX 2181153 . T . . END=2181647 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,868 +chrX 2181648 . CATCT C, 31.01 . AS_QUALapprox=|41|0;AS_VarDP=27|28|0;BaseQRankSum=-1.049;DP=64;MQRankSum=0.000;QUALapprox=41;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;ReadPosRankSum=0.851;VarDP=55 GT:AD:DP:GQ:PL:SB 1:27,28,0:55:41:41,0,1256:14,13,16,12 +chrX 2181653 . A . . END=2183112 GT:DP:GQ:MIN_DP:PL 0:64:58:64:0,58 +chrX 2183113 . A G, 535.04 . AS_QUALapprox=|545|0;AS_VarDP=21|38|0;BaseQRankSum=-0.178;DP=61;MQRankSum=-0.708;QUALapprox=545;RAW_GT_COUNT=0,0,1;RAW_MQandDP=218025,61;ReadPosRankSum=0.744;VarDP=59 GT:AD:DP:GQ:PL:SB 1:21,38,0:59:99:545,0,1245:9,12,21,17 +chrX 2183114 . G . . END=2183672 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1723 +chrX 2183673 . T . . END=2183673 GT:DP:GQ:MIN_DP:PL 0:61:5:61:0,5 +chrX 2183674 . G . . END=2183832 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1457 +chrX 2183833 . T C, 1745.04 . AS_QUALapprox=|1755|0;AS_VarDP=0|54|0;DP=54;QUALapprox=1755;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=54 GT:AD:DP:GQ:PL:SB 1:0,54,0:54:99:1755,0,1755:0,0,35,19 +chrX 2183834 . T . . END=2184579 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,269 +chrX 2184580 . A C, 1430.04 . AS_QUALapprox=|1440|0;AS_VarDP=0|46|0;DP=47;QUALapprox=1440;RAW_GT_COUNT=0,0,1;RAW_MQandDP=163591,47;VarDP=46 GT:AD:DP:GQ:PL:SB 1:0,46,0:46:99:1440,0,1440:0,0,22,24 +chrX 2184581 . A . . END=2184628 GT:DP:GQ:MIN_DP:PL 0:41:99:41:0,1201 +chrX 2184629 . C . . END=2184631 GT:DP:GQ:MIN_DP:PL 0:45:18:43:0,18 +chrX 2184632 . A . . END=2184792 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1125 +chrX 2184793 . CATCTATCTATCT C,CATCTATCT, 1453.01 . AS_QUALapprox=|1463|1018|0;AS_VarDP=0|34|22|0;DP=64;QUALapprox=1463;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,34,22,0:56:99:1463,0,445,1449:0,0,27,29 +chrX 2184806 . A . . END=2184949 GT:DP:GQ:MIN_DP:PL 0:68:63:64:0,63 +chrX 2184950 . A T, 422.04 . AS_QUALapprox=|432|0;AS_VarDP=27|40|0;BaseQRankSum=-1.123;DP=73;MQRankSum=-0.791;QUALapprox=432;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262225,73;ReadPosRankSum=0.256;VarDP=67 GT:AD:DP:GQ:PL:SB 1:27,40,0:67:99:432,0,1325:14,13,20,20 +chrX 2184951 . G . . END=2185176 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1653 +chrX 2185177 . T TTCTA, 281.01 . AS_QUALapprox=|291|0;AS_VarDP=24|31|0;BaseQRankSum=-1.539;DP=61;MQRankSum=0.000;QUALapprox=291;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;ReadPosRankSum=-1.104;VarDP=55 GT:AD:DP:GQ:PL:SB 1:24,31,0:55:99:291,0,1372:8,16,15,16 +chrX 2185178 . T . . END=2185663 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1573 +chrX 2185664 . G A, 198.04 . AS_QUALapprox=|208|0;AS_VarDP=25|32|0;BaseQRankSum=-0.305;DP=59;MQRankSum=0.000;QUALapprox=208;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;ReadPosRankSum=-2.341;VarDP=57 GT:AD:DP:GQ:PL:SB 1:25,32,0:57:99:208,0,1037:11,14,17,15 +chrX 2185665 . T . . END=2186369 GT:DP:GQ:MIN_DP:PL 0:84:99:84:0,691 +chrX 2186370 . T C, 935.04 . AS_QUALapprox=|945|0;AS_VarDP=30|49|0;BaseQRankSum=0.684;DP=82;MQRankSum=-2.516;QUALapprox=945;RAW_GT_COUNT=0,0,1;RAW_MQandDP=269646,82;ReadPosRankSum=0.839;VarDP=79 GT:AD:DP:GQ:PL:SB 1:30,49,0:79:99:945,0,1865:12,18,23,26 +chrX 2186371 . T . . END=2186597 GT:DP:GQ:MIN_DP:PL 0:77:99:77:0,164 +chrX 2186598 . G A, 1111.04 . AS_QUALapprox=|1121|0;AS_VarDP=23|49|0;BaseQRankSum=1.220;DP=104;MQRankSum=-1.719;QUALapprox=1121;RAW_GT_COUNT=0,0,1;RAW_MQandDP=312570,104;ReadPosRankSum=-1.238;VarDP=72 GT:AD:DP:GQ:PL:SB 1:23,49,0:72:99:1121,0,2187:15,8,30,19 +chrX 2186599 . G . . END=2186619 GT:DP:GQ:MIN_DP:PL 0:97:99:97:0,1095 +chrX 2186620 . A . . END=2186620 GT:DP:GQ:MIN_DP:PL 0:91:0:91:0,0 +chrX 2186621 . G . . END=2187354 GT:DP:GQ:MIN_DP:PL 0:44:84:44:0,84 +chrX 2187355 . G A, 759.04 . AS_QUALapprox=|769|0;AS_VarDP=4|28|0;BaseQRankSum=1.997;DP=34;MQRankSum=1.966;QUALapprox=769;RAW_GT_COUNT=0,0,1;RAW_MQandDP=110092,34;ReadPosRankSum=1.340;VarDP=32 GT:AD:DP:GQ:PL:SB 1:4,28,0:32:99:769,0,848:2,2,16,12 +chrX 2187356 . C . . END=2187695 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,124 +chrX 2187696 . T A, 7 . AS_QUALapprox=|17|0;AS_VarDP=32|31|0;BaseQRankSum=1.746;DP=63;MQRankSum=0.000;QUALapprox=17;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;ReadPosRankSum=1.100;VarDP=63 GT:AD:DP:GQ:PL:SB 1:32,31,0:63:17:17,0,1055:13,19,16,15 +chrX 2187697 . A . . END=2189324 GT:DP:GQ:MIN_DP:PL 0:65:70:65:0,70 +chrX 2189325 . ATTT A,ATTTT,ATTTTT, 232.01 . AS_QUALapprox=|0|6|242|0;AS_VarDP=1|12|2|15|0;BaseQRankSum=-0.469;DP=56;MQRankSum=0.000;QUALapprox=242;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198116,56;ReadPosRankSum=-0.694;VarDP=30 GT:AD:DP:GQ:PL:SB 3:1,12,2,15,0:30:99:242,325,236,0,466:1,0,12,17 +chrX 2189329 . T . . END=2190290 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,900 +chrX 2190291 . G GA, 79.01 . AS_QUALapprox=|89|0;AS_VarDP=29|33|0;BaseQRankSum=-1.082;DP=66;MQRankSum=1.099;QUALapprox=89;RAW_GT_COUNT=0,0,1;RAW_MQandDP=236704,66;ReadPosRankSum=0.797;VarDP=62 GT:AD:DP:GQ:PL:SB 1:29,33,0:62:89:89,0,954:16,13,15,18 +chrX 2190292 . A . . END=2191518 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,292 +chrX 2191519 . T C, 129.04 . AS_QUALapprox=|139|0;AS_VarDP=23|28|0;BaseQRankSum=-0.627;DP=51;MQRankSum=0.000;QUALapprox=139;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;ReadPosRankSum=0.540;VarDP=51 GT:AD:DP:GQ:PL:SB 1:23,28,0:51:99:139,0,917:9,14,17,11 +chrX 2191520 . A . . END=2191809 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1653 +chrX 2191810 . A G, 472.04 . AS_QUALapprox=|482|0;AS_VarDP=33|48|0;BaseQRankSum=-0.890;DP=84;MQRankSum=-0.804;QUALapprox=482;RAW_GT_COUNT=0,0,1;RAW_MQandDP=301825,84;ReadPosRankSum=-0.707;VarDP=81 GT:AD:DP:GQ:PL:SB 1:33,48,0:81:99:482,0,1548:17,16,28,20 +chrX 2191811 . C . . END=2192121 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1154 +chrX 2192122 . C A,CA, 51.01 . AS_QUALapprox=|0|61|0;AS_VarDP=19|2|18|0;BaseQRankSum=-0.972;DP=51;MQRankSum=0.000;QUALapprox=61;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;ReadPosRankSum=-0.899;VarDP=39 GT:AD:DP:GQ:PL:SB 2:19,2,18,0:39:61:61,887,0,731:11,8,11,9 +chrX 2192123 . A . . END=2193128 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1519 +chrX 2193129 . T C, 281.04 . AS_QUALapprox=|291|0;AS_VarDP=18|29|0;BaseQRankSum=-1.152;DP=48;MQRankSum=0.000;QUALapprox=291;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;ReadPosRankSum=1.511;VarDP=47 GT:AD:DP:GQ:PL:SB 1:18,29,0:47:99:291,0,886:6,12,13,16 +chrX 2193130 . C . . END=2193914 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,283 +chrX 2193915 . C CATCT, 200.01 . AS_QUALapprox=|210|0;AS_VarDP=23|28|0;BaseQRankSum=-0.489;DP=64;MQRankSum=0.000;QUALapprox=210;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;ReadPosRankSum=-1.667;VarDP=51 GT:AD:DP:GQ:PL:SB 1:23,28,0:51:99:210,0,1224:12,11,12,16 +chrX 2193916 . A . . END=2193959 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1628 +chrX 2193960 . T . . END=2193960 GT:DP:GQ:MIN_DP:PL 0:66:11:66:0,11 +chrX 2193961 . T . . END=2194266 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,138 +chrX 2194267 . C G, 436.04 . AS_QUALapprox=|446|0;AS_VarDP=22|36|0;BaseQRankSum=-0.551;DP=60;MQRankSum=0.000;QUALapprox=446;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;ReadPosRankSum=-0.729;VarDP=58 GT:AD:DP:GQ:PL:SB 1:22,36,0:58:99:446,0,1179:14,8,20,16 +chrX 2194268 . G . . END=2194300 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1738 +chrX 2194301 . G C, 357.04 . AS_QUALapprox=|367|0;AS_VarDP=22|34|0;BaseQRankSum=-0.700;DP=58;MQRankSum=0.000;QUALapprox=367;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;ReadPosRankSum=-0.361;VarDP=56 GT:AD:DP:GQ:PL:SB 1:22,34,0:56:99:367,0,1092:14,8,17,17 +chrX 2194302 . T . . END=2194327 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1732 +chrX 2194328 . A G, 370.04 . AS_QUALapprox=|380|0;AS_VarDP=21|35|0;BaseQRankSum=-2.059;DP=61;MQRankSum=0.000;QUALapprox=380;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;ReadPosRankSum=0.178;VarDP=56 GT:AD:DP:GQ:PL:SB 1:21,35,0:56:99:380,0,1090:15,6,19,16 +chrX 2194329 . T . . END=2194408 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1800 +chrX 2194409 . C T, 285.04 . AS_QUALapprox=|295|0;AS_VarDP=37|44|0;BaseQRankSum=1.569;DP=82;MQRankSum=0.000;QUALapprox=295;RAW_GT_COUNT=0,0,1;RAW_MQandDP=295200,82;ReadPosRankSum=0.457;VarDP=81 GT:AD:DP:GQ:PL:SB 1:37,44,0:81:99:295,0,1949:20,17,20,24 +chrX 2194410 . A . . END=2194415 GT:DP:GQ:MIN_DP:PL 0:80:99:80:0,1800 +chrX 2194416 . TTA T, 259.01 . AS_QUALapprox=|269|0;AS_VarDP=38|44|0;BaseQRankSum=1.188;DP=83;MQRankSum=0.000;QUALapprox=269;RAW_GT_COUNT=0,0,1;RAW_MQandDP=298800,83;ReadPosRankSum=-0.468;VarDP=82 GT:AD:DP:GQ:PL:SB 1:38,44,0:82:99:269,0,1948:21,17,21,23 +chrX 2194419 . C . . END=2194542 GT:DP:GQ:MIN_DP:PL 0:76:99:76:0,1800 +chrX 2194543 . T G, 338.04 . AS_QUALapprox=|348|0;AS_VarDP=27|37|0;BaseQRankSum=0.340;DP=67;MQRankSum=0.000;QUALapprox=348;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;ReadPosRankSum=-0.102;VarDP=64 GT:AD:DP:GQ:PL:SB 1:27,37,0:64:99:348,0,1266:10,17,24,13 +chrX 2194544 . T . . END=2195749 GT:DP:GQ:MIN_DP:PL 0:69:80:69:0,80 +chrX 2195750 . A C, 1737.04 . AS_QUALapprox=|1747|0;AS_VarDP=0|52|0;DP=54;QUALapprox=1747;RAW_GT_COUNT=0,0,1;RAW_MQandDP=193825,54;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:1747,0,1747:0,0,17,35 +chrX 2195751 . C . . END=2196427 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1125 +chrX 2196428 . G A, 2208.04 . AS_QUALapprox=|2218|0;AS_VarDP=0|65|0;DP=65;QUALapprox=2218;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230931,65;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,65,0:65:99:2218,0,2218:0,0,28,37 +chrX 2196429 . A . . END=2197089 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,585 +chrX 2197090 . T G, 448.04 . AS_QUALapprox=|458|0;AS_VarDP=15|28|0;BaseQRankSum=0.712;DP=44;MQRankSum=0.000;QUALapprox=458;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158400,44;ReadPosRankSum=-1.518;VarDP=43 GT:AD:DP:GQ:PL:SB 1:15,28,0:43:99:458,0,883:8,7,13,15 +chrX 2197091 . T . . END=2197412 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,1230 +chrX 2197413 . CT C, 128.01 . AS_QUALapprox=|138|0;AS_VarDP=17|22|0;BaseQRankSum=0.805;DP=53;MQRankSum=-0.827;QUALapprox=138;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190225,53;ReadPosRankSum=0.978;VarDP=39 GT:AD:DP:GQ:PL:SB 1:17,22,0:39:99:138,0,577:8,9,12,10 +chrX 2197415 . T . . END=2197890 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1254 +chrX 2197891 . A T,G, 2214.04 . AS_QUALapprox=|0|2224|0;AS_VarDP=0|6|65|0;DP=96;QUALapprox=2224;RAW_GT_COUNT=0,0,1;RAW_MQandDP=308934,96;VarDP=71 GT:AD:DP:GQ:PL:SB 2:0,6,65,0:71:99:2224,2617,0,2533:0,0,35,36 +chrX 2197892 . G . . END=2198074 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1617 +chrX 2198075 . T C, 2124.04 . AS_QUALapprox=|2134|0;AS_VarDP=0|65|0;DP=67;QUALapprox=2134;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,65,0:65:99:2134,0,2134:0,0,30,35 +chrX 2198076 . A . . END=2198238 GT:DP:GQ:MIN_DP:PL 0:74:99:74:0,1800 +chrX 2198239 . T C, 2042.04 . AS_QUALapprox=|2052|0;AS_VarDP=0|64|0;DP=65;QUALapprox=2052;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,64,0:64:99:2052,0,2052:0,0,28,36 +chrX 2198240 . C . . END=2198371 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1800 +chrX 2198372 . A G, 2116.04 . AS_QUALapprox=|2126|0;AS_VarDP=0|66|0;DP=66;QUALapprox=2126;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=66 GT:AD:DP:GQ:PL:SB 1:0,66,0:66:99:2126,0,2126:0,0,26,40 +chrX 2198373 . G . . END=2198497 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1603 +chrX 2198498 . T C, 2477.04 . AS_QUALapprox=|2487|0;AS_VarDP=0|58|0;DP=58;QUALapprox=2487;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,58,0:58:99:2487,0,2487:0,0,32,26 +chrX 2198499 . C . . END=2198520 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1800 +chrX 2198521 . A G, 2590.04 . AS_QUALapprox=|2600|0;AS_VarDP=0|58|0;DP=59;QUALapprox=2600;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,58,0:58:99:2600,0,2600:0,0,34,24 +chrX 2198522 . A T, 2555.04 . AS_QUALapprox=|2565|0;AS_VarDP=0|57|0;DP=58;QUALapprox=2565;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:2565,0,2565:0,0,34,23 +chrX 2198523 . G . . END=2199007 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1173 +chrX 2199008 . C CCA, 1610.01 . AS_QUALapprox=|1620|0;AS_VarDP=0|38|0;DP=39;QUALapprox=1620;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140049,39;VarDP=38 GT:AD:DP:GQ:PL:SB 1:0,38,0:38:99:1620,0,1620:0,0,17,21 +chrX 2199009 . C . . END=2199145 GT:DP:GQ:MIN_DP:PL 0:49:64:46:0,64 +chrX 2199146 . T C, 177.04 . AS_QUALapprox=|1874|0;AS_VarDP=0|46|0;DP=46;QUALapprox=1874;RAW_GT_COUNT=0,0,1;RAW_MQandDP=150416,46;VarDP=46 GT:AD:DP:GQ:PL:SB 1:0,46,0:46:99:1874,0,1054:0,0,3,3 +chrX 2199147 . G . . END=2199183 GT:DP:GQ:MIN_DP:PL 0:38:99:38:0,1107 +chrX 2199184 . G C, 575.04 . AS_QUALapprox=|1673|0;AS_VarDP=0|39|0;DP=39;QUALapprox=1673;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133216,39;VarDP=39 GT:AD:DP:GQ:PL:SB 1:0,39,0:39:99:1673,0,1137:0,0,9,6 +chrX 2199185 . A . . END=2199185 GT:DP:GQ:MIN_DP:PL 0:37:99:37:0,1266 +chrX 2199186 . C T, 697.04 . AS_QUALapprox=|1673|0;AS_VarDP=0|39|0;DP=42;QUALapprox=1673;RAW_GT_COUNT=0,0,1;RAW_MQandDP=144016,42;VarDP=39 GT:AD:DP:GQ:PL:SB 1:0,39,0:39:99:1673,0,1237:0,0,9,6 +chrX 2199187 . G . . END=2199307 GT:DP:GQ:MIN_DP:PL 0:40:99:40:0,1007 +chrX 2199308 . C T, 890.04 . AS_QUALapprox=|900|0;AS_VarDP=2|31|0;BaseQRankSum=2.279;DP=35;MQRankSum=-0.379;QUALapprox=900;RAW_GT_COUNT=0,0,1;RAW_MQandDP=119979,35;ReadPosRankSum=0.302;VarDP=33 GT:AD:DP:GQ:PL:SB 1:2,31,0:33:99:900,0,1252:0,2,16,15 +chrX 2199309 . G . . END=2199413 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,889 +chrX 2199414 . T C, 2965.04 . AS_QUALapprox=|2975|0;AS_VarDP=0|67|0;DP=67;QUALapprox=2975;RAW_GT_COUNT=0,0,1;RAW_MQandDP=231532,67;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,67,0:67:99:2975,0,2975:0,0,35,32 +chrX 2199415 . G A, 2965.04 . AS_QUALapprox=|2975|0;AS_VarDP=0|67|0;DP=67;QUALapprox=2975;RAW_GT_COUNT=0,0,1;RAW_MQandDP=231532,67;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,67,0:67:99:2975,0,2975:0,0,35,32 +chrX 2199416 . G . . END=2199562 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1800 +chrX 2199563 . C T, 2218.04 . AS_QUALapprox=|2228|0;AS_VarDP=0|68|0;DP=69;QUALapprox=2228;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,68,0:68:99:2228,0,2228:0,0,29,39 +chrX 2199564 . T . . END=2199633 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1800 +chrX 2199634 . GT G, 2800.01 . AS_QUALapprox=|2810|0;AS_VarDP=0|63|0;DP=66;QUALapprox=2810;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,63,0:63:99:2810,0,2810:0,0,36,27 +chrX 2199636 . G GCC, 2800.01 . AS_QUALapprox=|2810|0;AS_VarDP=0|63|0;DP=66;QUALapprox=2810;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,63,0:63:99:2810,0,2810:0,0,36,27 +chrX 2199637 . G . . END=2199844 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1634 +chrX 2199845 . C T, 476.04 . AS_QUALapprox=|486|0;AS_VarDP=1|12|0;BaseQRankSum=2.281;DP=73;MQRankSum=3.753;QUALapprox=486;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262449,73;ReadPosRankSum=-1.451;VarDP=13 GT:AD:DP:GQ:PL:SB 1:1,12,0:13:99:486,0,530:1,0,7,5 +chrX 2199846 . C . . END=2199847 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1800 +chrX 2199848 . ATCTCTGCTAAAAATAAACATTAAAAAATGTTTTATGTTTGAGATAGGGTGTGGTGGTGTGCACCTGTAGATGTAGTGAGATCCCCG A,GTCTCTGCTAAAAATAAACATTAAAAAATGTTTTATGTTTGAGATAGGGTGTGGTGGTGTGCACCTGTAGATGTAGTGAGATCCCCG, 2201.04 . AS_QUALapprox=|0|2211|0;AS_VarDP=1|0|32|0;BaseQRankSum=1.967;DP=100;MQRankSum=5.834;QUALapprox=2211;RAW_GT_COUNT=0,0,1;RAW_MQandDP=357570,100;ReadPosRankSum=-1.472;VarDP=33 GT:AD:DP:GQ:PL:SB 2:1,0,32,0:33:99:2211,3175,0,2721:1,0,17,15 +chrX 2199872 . AAAAT *,A, 1929.01 . AS_QUALapprox=|0|1939|0;AS_VarDP=1|0|26|0;BaseQRankSum=0.000;DP=84;MQRankSum=5.295;QUALapprox=1939;RAW_GT_COUNT=0,0,1;RAW_MQandDP=299970,84;ReadPosRankSum=-1.401;VarDP=27 GT:AD:DP:GQ:PL:SB 2:1,0,26,0:27:99:1939,2580,0,2288:1,0,12,14 +chrX 2199934 . G *,A, 1917.04 . AS_QUALapprox=|0|2195|0;AS_VarDP=0|0|32|0;DP=64;QUALapprox=2195;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=32 GT:AD:DP:GQ:PL:SB 2:0,0,32,0:32:99:2195,1897,0,2064:0,0,17,15 +chrX 2199935 . T . . END=2199991 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1485 +chrX 2199992 . G A, 3058.04 . AS_QUALapprox=|3068|0;AS_VarDP=0|77|0;DP=78;QUALapprox=3068;RAW_GT_COUNT=0,0,1;RAW_MQandDP=280800,78;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,77,0:77:99:3068,0,3068:0,0,46,31 +chrX 2199993 . T . . END=2200818 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1232 +chrX 2200819 . G A, 1910.04 . AS_QUALapprox=|1920|0;AS_VarDP=1|60|0;BaseQRankSum=2.461;DP=63;MQRankSum=0.000;QUALapprox=1920;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226225,63;ReadPosRankSum=1.449;VarDP=61 GT:AD:DP:GQ:PL:SB 1:1,60,0:61:99:1920,0,1929:0,1,26,34 +chrX 2200820 . T . . END=2201167 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1414 +chrX 2201168 . A G, 1507.04 . AS_QUALapprox=|1517|0;AS_VarDP=0|49|0;DP=50;QUALapprox=1517;RAW_GT_COUNT=0,0,1;RAW_MQandDP=177270,50;VarDP=49 GT:AD:DP:GQ:PL:SB 1:0,49,0:49:99:1517,0,1517:0,0,26,23 +chrX 2201169 . T . . END=2201295 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1095 +chrX 2201296 . C CA,A,CAA, 779.01 . AS_QUALapprox=|604|0|789|0;AS_VarDP=0|13|7|18|0;DP=53;QUALapprox=789;RAW_GT_COUNT=0,0,1;RAW_MQandDP=186800,53;VarDP=38 GT:AD:DP:GQ:PL:SB 3:0,13,7,18,0:38:99:789,185,1161,0,649:0,0,18,20 +chrX 2201297 . A . . END=2201419 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1800 +chrX 2201420 . A G, 2935.04 . AS_QUALapprox=|2945|0;AS_VarDP=0|68|0;DP=68;QUALapprox=2945;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,68,0:68:99:2945,0,2945:0,0,44,24 +chrX 2201421 . C . . END=2201441 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1800 +chrX 2201442 . A C, 3176.04 . AS_QUALapprox=|3186|0;AS_VarDP=0|75|0;DP=77;QUALapprox=3186;RAW_GT_COUNT=0,0,1;RAW_MQandDP=277200,77;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,75,0:75:99:3186,0,3186:0,0,48,27 +chrX 2201443 . C . . END=2201973 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1259 +chrX 2201974 . A ATGTGTG, 1007.01 . AS_QUALapprox=|1017|0;AS_VarDP=0|23|0;DP=58;QUALapprox=1017;RAW_GT_COUNT=0,0,1;RAW_MQandDP=203983,58;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:1017,0,1020:0,0,9,14 +chrX 2201975 . T . . END=2201997 GT:DP:GQ:MIN_DP:PL 0:47:99:47:0,571 +chrX 2201998 . A ATGTGTATATATATAT,ATGTGTATATATATATAT, 366.01 . AS_QUALapprox=|112|376|0;AS_VarDP=0|13|18|0;DP=56;QUALapprox=376;RAW_GT_COUNT=0,0,1;RAW_MQandDP=196783,56;VarDP=31 GT:AD:DP:GQ:PL:SB 2:0,13,18,0:31:99:376,264,0,811:0,0,14,17 +chrX 2201999 . G . . END=2202003 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,1242 +chrX 2202004 . T . . END=2202006 GT:DP:GQ:MIN_DP:PL 0:54:0:53:0,0 +chrX 2202007 . A . . END=2202009 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,1455 +chrX 2202010 . G . . END=2202010 GT:DP:GQ:MIN_DP:PL 0:52:5:52:0,5 +chrX 2202011 . A . . END=2202151 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,993 +chrX 2202152 . C T, 1651.04 . AS_QUALapprox=|1661|0;AS_VarDP=1|51|0;BaseQRankSum=2.443;DP=55;MQRankSum=-0.165;QUALapprox=1661;RAW_GT_COUNT=0,0,1;RAW_MQandDP=192634,55;ReadPosRankSum=1.533;VarDP=52 GT:AD:DP:GQ:PL:SB 1:1,51,0:52:99:1661,0,1670:1,0,27,24 +chrX 2202153 . C . . END=2202487 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,1319 +chrX 2202488 . C A, 1487.04 . AS_QUALapprox=|1497|0;AS_VarDP=1|52|0;BaseQRankSum=1.938;DP=53;MQRankSum=-0.099;QUALapprox=1497;RAW_GT_COUNT=0,0,1;RAW_MQandDP=188650,53;ReadPosRankSum=1.504;VarDP=53 GT:AD:DP:GQ:PL:SB 1:1,52,0:53:99:1497,0,1506:1,0,32,20 +chrX 2202489 . A . . END=2202555 GT:DP:GQ:MIN_DP:PL 0:45:99:45:0,1185 +chrX 2202556 . T C, 2014.04 . AS_QUALapprox=|2024|0;AS_VarDP=0|45|0;DP=45;QUALapprox=2024;RAW_GT_COUNT=0,0,1;RAW_MQandDP=159850,45;VarDP=45 GT:AD:DP:GQ:PL:SB 1:0,45,0:45:99:2024,0,2024:0,0,22,23 +chrX 2202557 . G A, 2059.04 . AS_QUALapprox=|2069|0;AS_VarDP=0|46|0;DP=46;QUALapprox=2069;RAW_GT_COUNT=0,0,1;RAW_MQandDP=163450,46;VarDP=46 GT:AD:DP:GQ:PL:SB 1:0,46,0:46:99:2069,0,2069:0,0,23,23 +chrX 2202558 . A . . END=2202579 GT:DP:GQ:MIN_DP:PL 0:45:99:45:0,1304 +chrX 2202580 . A AT, 123.01 . AS_QUALapprox=|133|0;AS_VarDP=22|26|0;BaseQRankSum=1.545;DP=55;MQRankSum=1.129;QUALapprox=133;RAW_GT_COUNT=0,0,1;RAW_MQandDP=197425,55;ReadPosRankSum=-0.476;VarDP=48 GT:AD:DP:GQ:PL:SB 1:22,26,0:48:99:133,0,831:13,9,14,12 +chrX 2202581 . A AAT,AT, 1548.01 . AS_QUALapprox=|1425|1558|0;AS_VarDP=0|22|26|0;DP=54;QUALapprox=1558;RAW_GT_COUNT=0,0,1;RAW_MQandDP=193825,54;VarDP=48 GT:AD:DP:GQ:PL:SB 2:0,22,26,0:48:99:1558,133,0,1217:0,0,27,21 +chrX 2202582 . A . . END=2202703 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1417 +chrX 2202704 . G GTATA, 108.01 . AS_QUALapprox=|118|0;AS_VarDP=23|24|0;BaseQRankSum=-0.390;DP=63;MQRankSum=0.000;QUALapprox=118;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;ReadPosRankSum=0.916;VarDP=47 GT:AD:DP:GQ:PL:SB 1:23,24,0:47:99:118,0,1016:16,7,13,11 +chrX 2202705 . T . . END=2202895 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1439 +chrX 2202896 . C T, 1688.04 . AS_QUALapprox=|1698|0;AS_VarDP=0|51|0;DP=53;QUALapprox=1698;RAW_GT_COUNT=0,0,1;RAW_MQandDP=189226,53;VarDP=51 GT:AD:DP:GQ:PL:SB 1:0,51,0:51:99:1698,0,1698:0,0,19,32 +chrX 2202897 . T . . END=2203036 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1553 +chrX 2203037 . C T, 70.04 . AS_QUALapprox=|80|0;AS_VarDP=27|27|0;BaseQRankSum=2.606;DP=55;MQRankSum=-0.963;QUALapprox=80;RAW_GT_COUNT=0,0,1;RAW_MQandDP=197425,55;ReadPosRankSum=0.363;VarDP=54 GT:AD:DP:GQ:PL:SB 1:27,27,0:54:80:80,0,919:10,17,18,9 +chrX 2203038 . A . . END=2203039 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1737 +chrX 2203040 . G GATC, 2427.01 . AS_QUALapprox=|2437|0;AS_VarDP=0|56|0;DP=58;QUALapprox=2437;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208225,58;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,56,0:56:99:2437,0,2438:0,0,27,29 +chrX 2203041 . A . . END=2203092 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1627 +chrX 2203093 . C T, 1756.04 . AS_QUALapprox=|1766|0;AS_VarDP=1|55|0;BaseQRankSum=-0.449;DP=56;MQRankSum=0.000;QUALapprox=1766;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;ReadPosRankSum=0.619;VarDP=56 GT:AD:DP:GQ:PL:SB 1:1,55,0:56:99:1766,0,1801:0,1,17,38 +chrX 2203094 . G . . END=2203237 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1295 +chrX 2203238 . A T, 1251.04 . AS_QUALapprox=|1261|0;AS_VarDP=0|37|0;DP=37;QUALapprox=1261;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133200,37;VarDP=37 GT:AD:DP:GQ:PL:SB 1:0,37,0:37:99:1261,0,1261:0,0,16,21 +chrX 2203239 . T . . END=2203290 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,1056 +chrX 2203291 . C T, 1243.04 . AS_QUALapprox=|1253|0;AS_VarDP=0|38|0;DP=40;QUALapprox=1253;RAW_GT_COUNT=0,0,1;RAW_MQandDP=144000,40;VarDP=38 GT:AD:DP:GQ:PL:SB 1:0,38,0:38:99:1253,0,1253:0,0,20,18 +chrX 2203292 . T . . END=2203322 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,1011 +chrX 2203323 . C T, 189.04 . AS_QUALapprox=|199|0;AS_VarDP=15|21|0;BaseQRankSum=-0.789;DP=38;MQRankSum=0.000;QUALapprox=199;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;ReadPosRankSum=-0.481;VarDP=36 GT:AD:DP:GQ:PL:SB 1:15,21,0:36:99:199,0,720:9,6,13,8 +chrX 2203324 . G . . END=2203386 GT:DP:GQ:MIN_DP:PL 0:44:99:44:0,1211 +chrX 2203387 . T C, 1784.04 . AS_QUALapprox=|1794|0;AS_VarDP=0|57|0;DP=58;QUALapprox=1794;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:1794,0,1794:0,0,31,26 +chrX 2203388 . G . . END=2203526 GT:DP:GQ:MIN_DP:PL 0:43:99:43:0,878 +chrX 2203527 . T C, 1498.04 . AS_QUALapprox=|1508|0;AS_VarDP=0|46|0;DP=47;QUALapprox=1508;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;VarDP=46 GT:AD:DP:GQ:PL:SB 1:0,46,0:46:99:1508,0,1508:0,0,22,24 +chrX 2203528 . C . . END=2203615 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1453 +chrX 2203616 . C T, 2028.04 . AS_QUALapprox=|2038|0;AS_VarDP=0|65|0;DP=66;QUALapprox=2038;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,65,0:65:99:2038,0,2038:0,0,37,28 +chrX 2203617 . A . . END=2203671 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1800 +chrX 2203672 . G A, 387.04 . AS_QUALapprox=|397|0;AS_VarDP=29|42|0;BaseQRankSum=-1.557;DP=73;MQRankSum=0.000;QUALapprox=397;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;ReadPosRankSum=0.339;VarDP=71 GT:AD:DP:GQ:PL:SB 1:29,42,0:71:99:397,0,1370:13,16,24,18 +chrX 2203673 . G . . END=2203721 GT:DP:GQ:MIN_DP:PL 0:73:99:73:0,1800 +chrX 2203722 . T C, 2361.04 . AS_QUALapprox=|2371|0;AS_VarDP=0|74|0;DP=76;QUALapprox=2371;RAW_GT_COUNT=0,0,1;RAW_MQandDP=273600,76;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,74,0:74:99:2371,0,2371:0,0,36,38 +chrX 2203723 . C . . END=2203866 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1800 +chrX 2203867 . A G, 2218.04 . AS_QUALapprox=|2228|0;AS_VarDP=0|68|0;DP=70;QUALapprox=2228;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248554,70;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,68,0:68:99:2228,0,2228:0,0,35,33 +chrX 2203868 . A . . END=2204156 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1663 +chrX 2204157 . T A, 2645.04 . AS_QUALapprox=|2655|0;AS_VarDP=0|81|0;DP=85;QUALapprox=2655;RAW_GT_COUNT=0,0,1;RAW_MQandDP=306000,85;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,81,0:81:99:2655,0,2655:0,0,44,37 +chrX 2204158 . T . . END=2204321 GT:DP:GQ:MIN_DP:PL 0:79:99:79:0,1800 +chrX 2204322 . G A, 2678.04 . AS_QUALapprox=|2688|0;AS_VarDP=1|66|0;BaseQRankSum=-0.427;DP=71;MQRankSum=-0.189;QUALapprox=2688;RAW_GT_COUNT=0,0,1;RAW_MQandDP=247999,71;ReadPosRankSum=0.776;VarDP=67 GT:AD:DP:GQ:PL:SB 1:1,66,0:67:99:2688,0,2733:0,1,26,40 +chrX 2204323 . A . . END=2204344 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1800 +chrX 2204345 . T C, 2302.04 . AS_QUALapprox=|2312|0;AS_VarDP=1|55|0;BaseQRankSum=-0.617;DP=58;MQRankSum=-0.096;QUALapprox=2312;RAW_GT_COUNT=0,0,1;RAW_MQandDP=203690,58;ReadPosRankSum=1.578;VarDP=56 GT:AD:DP:GQ:PL:SB 1:1,55,0:56:99:2312,0,2357:0,1,18,37 +chrX 2204346 . G . . END=2204426 GT:DP:GQ:MIN_DP:PL 0:46:99:46:0,1356 +chrX 2204427 . T A, 1440.04 . AS_QUALapprox=|1450|0;AS_VarDP=0|42|0;DP=47;QUALapprox=1450;RAW_GT_COUNT=0,0,1;RAW_MQandDP=167625,47;VarDP=42 GT:AD:DP:GQ:PL:SB 1:0,42,0:42:99:1450,0,1450:0,0,21,21 +chrX 2204428 . G . . END=2204857 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1429 +chrX 2204858 . T C, 1841.04 . AS_QUALapprox=|1851|0;AS_VarDP=1|61|0;BaseQRankSum=-0.731;DP=63;MQRankSum=-0.569;QUALapprox=1851;RAW_GT_COUNT=0,0,1;RAW_MQandDP=188364,63;ReadPosRankSum=1.230;VarDP=62 GT:AD:DP:GQ:PL:SB 1:1,61,0:62:99:1851,0,1886:1,0,28,33 +chrX 2204859 . G . . END=2204971 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1582 +chrX 2204972 . A . . END=2204972 GT:DP:GQ:MIN_DP:PL 0:57:0:57:0,0 +chrX 2204973 . C . . END=2205067 GT:DP:GQ:MIN_DP:PL 0:42:99:42:0,208 +chrX 2205068 . A . . END=2205068 GT:DP:GQ:MIN_DP:PL 0:16:0:16:0,0 +chrX 2205069 . C . . END=2205083 GT:DP:GQ:MIN_DP:PL 0:17:99:17:0,135 +chrX 2205084 . T . . END=2205084 GT:DP:GQ:MIN_DP:PL 0:22:0:22:0,0 +chrX 2205085 . T . . END=2205129 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,738 +chrX 2205130 . G . . END=2205130 GT:DP:GQ:MIN_DP:PL 0:42:0:42:0,0 +chrX 2205131 . A . . END=2205161 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1347 +chrX 2205162 . A . . END=2205162 GT:DP:GQ:MIN_DP:PL 0:58:0:58:0,0 +chrX 2205163 . G . . END=2205248 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1800 +chrX 2205249 . T C, 2686.04 . AS_QUALapprox=|2696|0;AS_VarDP=0|62|0;DP=64;QUALapprox=2696;RAW_GT_COUNT=0,0,1;RAW_MQandDP=229825,64;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:2696,0,2696:0,0,32,30 +chrX 2205250 . G . . END=2205255 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1800 +chrX 2205256 . C T, 2707.04 . AS_QUALapprox=|2717|0;AS_VarDP=0|63|0;DP=64;QUALapprox=2717;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,63,0:63:99:2717,0,2717:0,0,31,32 +chrX 2205257 . C . . END=2205507 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1558 +chrX 2205508 . G T, 1449.04 . AS_QUALapprox=|1459|0;AS_VarDP=0|45|0;DP=47;QUALapprox=1459;RAW_GT_COUNT=0,0,1;RAW_MQandDP=163252,47;VarDP=45 GT:AD:DP:GQ:PL:SB 1:0,45,0:45:99:1459,0,1459:0,0,31,14 +chrX 2205509 . T . . END=2205536 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,1408 +chrX 2205537 . G A, 1696.04 . AS_QUALapprox=|1706|0;AS_VarDP=0|52|0;DP=56;QUALapprox=1706;RAW_GT_COUNT=0,0,1;RAW_MQandDP=186367,56;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:1706,0,1706:0,0,33,19 +chrX 2205538 . G . . END=2205566 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1533 +chrX 2205567 . T G, 1694.04 . AS_QUALapprox=|1704|0;AS_VarDP=0|57|0;DP=60;QUALapprox=1704;RAW_GT_COUNT=0,0,1;RAW_MQandDP=199282,60;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:1704,0,1704:0,0,33,24 +chrX 2205568 . G . . END=2205613 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1731 +chrX 2205614 . T C, 156.04 . AS_QUALapprox=|166|0;AS_VarDP=28|37|0;BaseQRankSum=-2.163;DP=67;MQRankSum=2.415;QUALapprox=166;RAW_GT_COUNT=0,0,1;RAW_MQandDP=221462,67;ReadPosRankSum=-0.775;VarDP=65 GT:AD:DP:GQ:PL:SB 1:28,37,0:65:99:166,0,1099:17,11,20,17 +chrX 2205615 . G . . END=2205717 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1776 +chrX 2205718 . G A, 1950.04 . AS_QUALapprox=|1960|0;AS_VarDP=0|61|0;DP=64;QUALapprox=1960;RAW_GT_COUNT=0,0,1;RAW_MQandDP=228825,64;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,61,0:61:99:1960,0,1960:0,0,29,32 +chrX 2205719 . T . . END=2205760 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1800 +chrX 2205761 . C T, 1722.04 . AS_QUALapprox=|1732|0;AS_VarDP=0|54|0;DP=60;QUALapprox=1732;RAW_GT_COUNT=0,0,1;RAW_MQandDP=213634,60;VarDP=54 GT:AD:DP:GQ:PL:SB 1:0,54,0:54:99:1732,0,1732:0,0,22,32 +chrX 2205762 . G . . END=2205820 GT:DP:GQ:MIN_DP:PL 0:44:99:44:0,1261 +chrX 2205821 . T TCAC, 1768.01 . AS_QUALapprox=|1778|0;AS_VarDP=0|40|0;DP=43;QUALapprox=1778;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154800,43;VarDP=40 GT:AD:DP:GQ:PL:SB 1:0,40,0:40:99:1778,0,1779:0,0,19,21 +chrX 2205822 . C . . END=2205869 GT:DP:GQ:MIN_DP:PL 0:40:99:40:0,1211 +chrX 2205870 . C T, 1991.04 . AS_QUALapprox=|2001|0;AS_VarDP=0|47|0;DP=47;QUALapprox=2001;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;VarDP=47 GT:AD:DP:GQ:PL:SB 1:0,47,0:47:99:2001,0,2001:0,0,24,23 +chrX 2205871 . C . . END=2205901 GT:DP:GQ:MIN_DP:PL 0:46:99:46:0,1410 +chrX 2205902 . T C, 2126.04 . AS_QUALapprox=|2136|0;AS_VarDP=0|51|0;DP=54;QUALapprox=2136;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=51 GT:AD:DP:GQ:PL:SB 1:0,51,0:51:99:2136,0,2136:0,0,28,23 +chrX 2205903 . C . . END=2206056 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1800 +chrX 2206057 . G A, 3122.04 . AS_QUALapprox=|3132|0;AS_VarDP=0|71|0;DP=71;QUALapprox=3132;RAW_GT_COUNT=0,0,1;RAW_MQandDP=254450,71;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,71,0:71:99:3132,0,3132:0,0,33,38 +chrX 2206058 . G . . END=2206066 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1800 +chrX 2206067 . C T, 3171.04 . AS_QUALapprox=|3181|0;AS_VarDP=1|73|0;BaseQRankSum=2.431;DP=75;MQRankSum=-0.083;QUALapprox=3181;RAW_GT_COUNT=0,0,1;RAW_MQandDP=268850,75;ReadPosRankSum=1.234;VarDP=74 GT:AD:DP:GQ:PL:SB 1:1,73,0:74:99:3181,0,3191:0,1,34,39 +chrX 2206068 . A . . END=2206085 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1800 +chrX 2206086 . C T, 2386.04 . AS_QUALapprox=|2396|0;AS_VarDP=0|73|0;DP=77;QUALapprox=2396;RAW_GT_COUNT=0,0,1;RAW_MQandDP=276625,77;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,73,0:73:99:2396,0,2396:0,0,34,39 +chrX 2206087 . C . . END=2206152 GT:DP:GQ:MIN_DP:PL 0:74:99:74:0,1800 +chrX 2206153 . C T, 2477.04 . AS_QUALapprox=|2487|0;AS_VarDP=0|75|0;DP=83;QUALapprox=2487;RAW_GT_COUNT=0,0,1;RAW_MQandDP=298225,83;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,75,0:75:99:2487,0,2487:0,0,32,43 +chrX 2206154 . C . . END=2206243 GT:DP:GQ:MIN_DP:PL 0:73:99:73:0,1800 +chrX 2206244 . A G, 277.04 . AS_QUALapprox=|287|0;AS_VarDP=32|42|0;BaseQRankSum=-1.079;DP=83;MQRankSum=1.173;QUALapprox=287;RAW_GT_COUNT=0,0,1;RAW_MQandDP=298225,83;ReadPosRankSum=-0.246;VarDP=74 GT:AD:DP:GQ:PL:SB 1:32,42,0:74:99:287,0,1350:17,15,20,22 +chrX 2206245 . G . . END=2206295 GT:DP:GQ:MIN_DP:PL 0:75:99:75:0,1800 +chrX 2206296 . A C, 8 . AS_QUALapprox=|18|0;AS_VarDP=34|38|0;BaseQRankSum=-2.569;DP=80;MQRankSum=1.085;QUALapprox=18;RAW_GT_COUNT=0,0,1;RAW_MQandDP=287425,80;ReadPosRankSum=0.542;VarDP=72 GT:AD:DP:GQ:PL:SB 1:34,38,0:72:18:18,0,1130:20,14,18,20 +chrX 2206297 . G . . END=2206406 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1800 +chrX 2206407 . T C, 1796.04 . AS_QUALapprox=|1806|0;AS_VarDP=0|56|0;DP=63;QUALapprox=1806;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226225,63;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,56,0:56:99:1806,0,1806:0,0,22,34 +chrX 2206408 . G . . END=2206479 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1581 +chrX 2206480 . T C, 1625.04 . AS_QUALapprox=|1635|0;AS_VarDP=0|54|0;DP=68;QUALapprox=1635;RAW_GT_COUNT=0,0,1;RAW_MQandDP=243874,68;VarDP=54 GT:AD:DP:GQ:PL:SB 1:0,54,0:54:99:1635,0,1635:0,0,25,29 +chrX 2206481 . G . . END=2206606 GT:DP:GQ:MIN_DP:PL 0:45:99:45:0,135 +chrX 2206607 . G . . END=2206607 GT:DP:GQ:MIN_DP:PL 0:29:0:29:0,0 +chrX 2206608 . A . . END=2206619 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,135 +chrX 2206620 . G . . END=2206620 GT:DP:GQ:MIN_DP:PL 0:32:0:32:0,0 +chrX 2206621 . G . . END=2206623 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,104 +chrX 2206624 . G . . END=2206626 GT:DP:GQ:MIN_DP:PL 0:31:0:31:0,0 +chrX 2206627 . A . . END=2206627 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,540 +chrX 2206628 . G . . END=2206633 GT:DP:GQ:MIN_DP:PL 0:32:0:32:0,0 +chrX 2206634 . A . . END=2206634 GT:DP:GQ:MIN_DP:PL 0:33:45:33:0,45 +chrX 2206635 . A . . END=2206635 GT:DP:GQ:MIN_DP:PL 0:33:0:33:0,0 +chrX 2206636 . G . . END=2206636 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,720 +chrX 2206637 . G . . END=2206637 GT:DP:GQ:MIN_DP:PL 0:32:0:32:0,0 +chrX 2206638 . A . . END=2206639 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,720 +chrX 2206640 . G . . END=2206640 GT:DP:GQ:MIN_DP:PL 0:30:0:30:0,0 +chrX 2206641 . G . . END=2206641 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,810 +chrX 2206642 . A . . END=2206645 GT:DP:GQ:MIN_DP:PL 0:32:0:32:0,0 +chrX 2206646 . A . . END=2206646 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,184 +chrX 2206647 . A . . END=2206647 GT:DP:GQ:MIN_DP:PL 0:31:0:31:0,0 +chrX 2206648 . G . . END=2206651 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,313 +chrX 2206652 . G . . END=2206652 GT:DP:GQ:MIN_DP:PL 0:30:0:30:0,0 +chrX 2206653 . G . . END=2206653 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,1035 +chrX 2206654 . A . . END=2206657 GT:DP:GQ:MIN_DP:PL 0:33:0:33:0,0 +chrX 2206658 . A . . END=2206658 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,442 +chrX 2206659 . A . . END=2206659 GT:DP:GQ:MIN_DP:PL 0:34:0:34:0,0 +chrX 2206660 . G . . END=2206663 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,640 +chrX 2206664 . G . . END=2206664 GT:DP:GQ:MIN_DP:PL 0:34:0:34:0,0 +chrX 2206665 . G . . END=2206665 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,1137 +chrX 2206666 . A . . END=2206669 GT:DP:GQ:MIN_DP:PL 0:34:0:34:0,0 +chrX 2206670 . A . . END=2206670 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,1113 +chrX 2206671 . A . . END=2206671 GT:DP:GQ:MIN_DP:PL 0:34:0:34:0,0 +chrX 2206672 . G . . END=2206675 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,1068 +chrX 2206676 . G . . END=2206676 GT:DP:GQ:MIN_DP:PL 0:34:0:34:0,0 +chrX 2206677 . G . . END=2206677 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,1152 +chrX 2206678 . A . . END=2206680 GT:DP:GQ:MIN_DP:PL 0:35:0:35:0,0 +chrX 2206681 . G . . END=2206683 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,1162 +chrX 2206684 . A . . END=2206685 GT:DP:GQ:MIN_DP:PL 0:36:0:36:0,0 +chrX 2206686 . G . . END=2207096 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1245 +chrX 2207097 . A G, 2268.04 . AS_QUALapprox=|2278|0;AS_VarDP=0|71|0;DP=76;QUALapprox=2278;RAW_GT_COUNT=0,0,1;RAW_MQandDP=273025,76;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,71,0:71:99:2278,0,2278:0,0,42,29 +chrX 2207098 . T . . END=2207231 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1170 +chrX 2207232 . CAA C,CA, 70.76 . AS_QUALapprox=|78|81|0;AS_VarDP=2|17|6|0;DP=52;MQRankSum=0.000;QUALapprox=81;RAW_GT_COUNT=0,0,1;RAW_MQandDP=185809,52;VarDP=25 GT:AD:DP:GQ:PL:SB 2:2,17,6,0:25:3:81,3,0,403:0,2,9,14 +chrX 2207235 . A . . END=2207295 GT:DP:GQ:MIN_DP:PL 0:38:94:38:0,94 +chrX 2207296 . T TGC, 249.01 . AS_QUALapprox=|259|0;AS_VarDP=13|19|0;BaseQRankSum=-0.976;DP=42;MQRankSum=-1.143;QUALapprox=259;RAW_GT_COUNT=0,0,1;RAW_MQandDP=148388,42;ReadPosRankSum=-1.786;VarDP=32 GT:AD:DP:GQ:PL:SB 1:13,19,0:32:99:259,0,845:8,5,8,11 +chrX 2207297 . G . . END=2207305 GT:DP:GQ:MIN_DP:PL 0:39:99:39:0,945 +chrX 2207306 . T TGTGTGTGTGC,TGTGTGTGTGTGC,TGTGTGTGTGTGTGC,TGTGTGTGTGTGTGTGC, 1178.01 . AS_QUALapprox=|1188|590|501|970|0;AS_VarDP=0|17|0|0|13|0;DP=52;QUALapprox=1188;RAW_GT_COUNT=0,0,1;RAW_MQandDP=184388,52;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,17,0,0,13,0:30:99:1188,0,598,687,218,879:0,0,15,15 +chrX 2207307 . G . . END=2207562 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1344 +chrX 2207563 . A AT,ATT, 1414.01 . AS_QUALapprox=|1424|0|0;AS_VarDP=2|52|0|0;BaseQRankSum=-0.511;DP=63;MQRankSum=-0.098;QUALapprox=1424;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226225,63;ReadPosRankSum=-0.321;VarDP=54 GT:AD:DP:GQ:PL:SB 1:2,52,0,0:54:99:1424,0,1464,1467:1,1,32,20 +chrX 2207564 . T . . END=2207591 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1777 +chrX 2207592 . C T, 1915.04 . AS_QUALapprox=|1925|0;AS_VarDP=0|60|0;DP=63;QUALapprox=1925;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226225,63;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:1925,0,1925:0,0,34,26 +chrX 2207593 . G . . END=2207651 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1749 +chrX 2207652 . T C, 2030.04 . AS_QUALapprox=|2040|0;AS_VarDP=0|65|0;DP=66;QUALapprox=2040;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237025,66;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,65,0:65:99:2040,0,2040:0,0,32,33 +chrX 2207653 . G . . END=2207756 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1716 +chrX 2207757 . G A, 1797.04 . AS_QUALapprox=|1807|0;AS_VarDP=1|54|0;BaseQRankSum=2.584;DP=56;MQRankSum=0.000;QUALapprox=1807;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;ReadPosRankSum=-1.197;VarDP=55 GT:AD:DP:GQ:PL:SB 1:1,54,0:55:99:1807,0,1817:0,1,25,29 +chrX 2207758 . C . . END=2208063 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,109 +chrX 2208064 . T TCAC, 110.01 . AS_QUALapprox=|120|0;AS_VarDP=22|25|0;BaseQRankSum=0.151;DP=50;MQRankSum=-0.895;QUALapprox=120;RAW_GT_COUNT=0,0,1;RAW_MQandDP=179425,50;ReadPosRankSum=-0.629;VarDP=47 GT:AD:DP:GQ:PL:SB 1:22,25,0:47:99:120,0,1110:11,11,16,9 +chrX 2208065 . C . . END=2208201 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1485 +chrX 2208202 . AAAAG A, 372.01 . AS_QUALapprox=|382|0;AS_VarDP=24|32|0;BaseQRankSum=-0.355;DP=64;MQRankSum=0.000;QUALapprox=382;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;ReadPosRankSum=1.201;VarDP=56 GT:AD:DP:GQ:PL:SB 1:24,32,0:56:99:382,0,1418:9,15,16,16 +chrX 2208207 . A . . END=2208545 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,115 +chrX 2208546 . AT A, 1505.01 . AS_QUALapprox=|1515|0;AS_VarDP=1|54|0;BaseQRankSum=1.628;DP=63;MQRankSum=0.000;QUALapprox=1515;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223586,63;ReadPosRankSum=1.261;VarDP=55 GT:AD:DP:GQ:PL:SB 1:1,54,0:55:99:1515,0,1524:1,0,19,35 +chrX 2208548 . T . . END=2208707 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1274 +chrX 2208708 . T C, 62.04 . AS_QUALapprox=|72|0;AS_VarDP=20|23|0;BaseQRankSum=-0.190;DP=47;MQRankSum=-0.414;QUALapprox=72;RAW_GT_COUNT=0,0,1;RAW_MQandDP=163480,47;ReadPosRankSum=-0.207;VarDP=43 GT:AD:DP:GQ:PL:SB 1:20,23,0:43:72:72,0,736:8,12,11,12 +chrX 2208709 . G . . END=2208790 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,1033 +chrX 2208791 . A C, 1375.04 . AS_QUALapprox=|1385|0;AS_VarDP=0|43|0;DP=47;QUALapprox=1385;RAW_GT_COUNT=0,0,1;RAW_MQandDP=167597,47;VarDP=43 GT:AD:DP:GQ:PL:SB 1:0,43,0:43:99:1385,0,1385:0,0,17,26 +chrX 2208792 . G . . END=2208956 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1509 +chrX 2208957 . C G, 1988.04 . AS_QUALapprox=|1998|0;AS_VarDP=0|52|0;DP=53;QUALapprox=1998;RAW_GT_COUNT=0,0,1;RAW_MQandDP=185636,53;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:1998,0,1998:0,0,31,21 +chrX 2208958 . G . . END=2209155 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,194 +chrX 2209156 . C T, 3395.04 . AS_QUALapprox=|3405|0;AS_VarDP=0|78|0;DP=79;QUALapprox=3405;RAW_GT_COUNT=0,0,1;RAW_MQandDP=284400,79;VarDP=78 GT:AD:DP:GQ:PL:SB 1:0,78,0:78:99:3405,0,3405:0,0,37,41 +chrX 2209157 . C . . END=2209161 GT:DP:GQ:MIN_DP:PL 0:77:99:77:0,1800 +chrX 2209162 . TGG T, 3402.01 . AS_QUALapprox=|3412|0;AS_VarDP=0|78|0;DP=79;QUALapprox=3412;RAW_GT_COUNT=0,0,1;RAW_MQandDP=284400,79;VarDP=78 GT:AD:DP:GQ:PL:SB 1:0,78,0:78:99:3412,0,3412:0,0,38,40 +chrX 2209165 . G . . END=2209222 GT:DP:GQ:MIN_DP:PL 0:78:99:78:0,1800 +chrX 2209223 . AG A, 37.01 . AS_QUALapprox=|47|0;AS_VarDP=40|42|0;BaseQRankSum=-1.670;DP=84;MQRankSum=0.000;QUALapprox=47;RAW_GT_COUNT=0,0,1;RAW_MQandDP=302400,84;ReadPosRankSum=0.077;VarDP=82 GT:AD:DP:GQ:PL:SB 1:40,42,0:82:47:47,0,1836:18,22,21,21 +chrX 2209225 . T . . END=2209358 GT:DP:GQ:MIN_DP:PL 0:79:30:76:0,30 +chrX 2209359 . ATT A,AT, 872.01 . AS_QUALapprox=|766|882|0;AS_VarDP=2|25|30|0;BaseQRankSum=1.946;DP=77;MQRankSum=-0.204;QUALapprox=882;RAW_GT_COUNT=0,0,1;RAW_MQandDP=275493,77;ReadPosRankSum=1.150;VarDP=57 GT:AD:DP:GQ:PL:SB 2:2,25,30,0:57:99:882,116,0,867:1,1,27,28 +chrX 2209362 . T . . END=2209538 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1800 +chrX 2209539 . G A, 2066.04 . AS_QUALapprox=|2076|0;AS_VarDP=0|61|0;DP=65;QUALapprox=2076;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,61,0:61:99:2076,0,2076:0,0,27,34 +chrX 2209540 . A . . END=2209569 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1800 +chrX 2209570 . C T, 174.04 . AS_QUALapprox=|184|0;AS_VarDP=28|34|0;BaseQRankSum=-0.651;DP=63;MQRankSum=0.000;QUALapprox=184;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;ReadPosRankSum=2.073;VarDP=62 GT:AD:DP:GQ:PL:SB 1:28,34,0:62:99:184,0,1077:16,12,18,16 +chrX 2209571 . A . . END=2209601 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1800 +chrX 2209602 . C T, 2204.04 . AS_QUALapprox=|2214|0;AS_VarDP=0|67|0;DP=68;QUALapprox=2214;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,67,0:67:99:2214,0,2214:0,0,36,31 +chrX 2209603 . A . . END=2210207 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,508 +chrX 2210208 . G A, 154.04 . AS_QUALapprox=|164|0;AS_VarDP=19|24|0;BaseQRankSum=0.069;DP=47;MQRankSum=0.000;QUALapprox=164;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;ReadPosRankSum=-0.024;VarDP=43 GT:AD:DP:GQ:PL:SB 1:19,24,0:43:99:164,0,769:9,10,13,11 +chrX 2210209 . T . . END=2210327 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,1408 +chrX 2210328 . T C, 31.04 . AS_QUALapprox=|41|0;AS_VarDP=25|29|0;BaseQRankSum=-2.043;DP=56;MQRankSum=0.000;QUALapprox=41;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;ReadPosRankSum=-1.406;VarDP=54 GT:AD:DP:GQ:PL:SB 1:25,29,0:54:41:41,0,870:13,12,18,11 +chrX 2210329 . T . . END=2210748 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1706 +chrX 2210749 . G A, 89.04 . AS_QUALapprox=|99|0;AS_VarDP=28|30|0;BaseQRankSum=1.488;DP=59;MQRankSum=0.000;QUALapprox=99;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;ReadPosRankSum=-0.156;VarDP=58 GT:AD:DP:GQ:PL:SB 1:28,30,0:58:99:99,0,1032:12,16,13,17 +chrX 2210750 . G . . END=2210808 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1800 +chrX 2210809 . C T, 114.04 . AS_QUALapprox=|124|0;AS_VarDP=27|30|0;BaseQRankSum=0.885;DP=59;MQRankSum=0.000;QUALapprox=124;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;ReadPosRankSum=-2.086;VarDP=57 GT:AD:DP:GQ:PL:SB 1:27,30,0:57:99:124,0,1002:13,14,12,18 +chrX 2210810 . G . . END=2210869 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1673 +chrX 2210870 . C CAA, 2674.01 . AS_QUALapprox=|2684|0;AS_VarDP=0|60|0;DP=61;QUALapprox=2684;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:2684,0,2684:0,0,29,31 +chrX 2210871 . A . . END=2210962 GT:DP:GQ:MIN_DP:PL 0:74:99:74:0,1800 +chrX 2210963 . A G, 2366.04 . AS_QUALapprox=|2376|0;AS_VarDP=0|75|0;DP=78;QUALapprox=2376;RAW_GT_COUNT=0,0,1;RAW_MQandDP=280800,78;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,75,0:75:99:2376,0,2376:0,0,36,39 +chrX 2210964 . C . . END=2211247 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1677 +chrX 2211248 . G GATGGATGGATGA, 2880.01 . AS_QUALapprox=|2890|0;AS_VarDP=0|66|0;DP=74;QUALapprox=2890;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;VarDP=66 GT:AD:DP:GQ:PL:SB 1:0,66,0:66:99:2890,0,2892:0,0,41,25 +chrX 2211249 . A . . END=2211286 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1800 +chrX 2211287 . G GGATGGATA, 3061.01 . AS_QUALapprox=|3071|0;AS_VarDP=0|69|0;DP=69;QUALapprox=3071;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,69,0:69:99:3071,0,3071:0,0,41,28 +chrX 2211288 . G . . END=2211315 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1800 +chrX 2211316 . A C, 2869.04 . AS_QUALapprox=|2879|0;AS_VarDP=0|68|0;DP=69;QUALapprox=2879;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,68,0:68:99:2879,0,2879:0,0,39,29 +chrX 2211317 . C . . END=2211437 GT:DP:GQ:MIN_DP:PL 0:75:99:75:0,1800 +chrX 2211438 . T A, 2267.04 . AS_QUALapprox=|2277|0;AS_VarDP=0|71|0;DP=73;QUALapprox=2277;RAW_GT_COUNT=0,0,1;RAW_MQandDP=260356,73;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,71,0:71:99:2277,0,2277:0,0,34,37 +chrX 2211439 . C . . END=2211564 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,577 +chrX 2211565 . A G, 1949.04 . AS_QUALapprox=|1959|0;AS_VarDP=0|60|0;DP=64;QUALapprox=1959;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:1959,0,1959:0,0,22,38 +chrX 2211566 . G . . END=2211677 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1800 +chrX 2211678 . A G, 2123.04 . AS_QUALapprox=|2133|0;AS_VarDP=0|67|0;DP=70;QUALapprox=2133;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,67,0:67:99:2133,0,2133:0,0,33,34 +chrX 2211679 . T . . END=2211887 GT:DP:GQ:MIN_DP:PL 0:59:35:50:0,35 +chrX 2211888 . G C, 457.04 . AS_QUALapprox=|467|0;AS_VarDP=18|30|0;BaseQRankSum=2.667;DP=49;MQRankSum=0.000;QUALapprox=467;RAW_GT_COUNT=0,0,1;RAW_MQandDP=175300,49;ReadPosRankSum=-1.492;VarDP=48 GT:AD:DP:GQ:PL:SB 1:18,30,0:48:99:467,0,1007:9,9,19,11 +chrX 2211889 . T . . END=2212005 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,248 +chrX 2212006 . AT A, 104.01 . AS_QUALapprox=|114|0;AS_VarDP=26|29|0;BaseQRankSum=-0.143;DP=55;MQRankSum=-5.125;QUALapprox=114;RAW_GT_COUNT=0,0,1;RAW_MQandDP=175241,55;ReadPosRankSum=-0.107;VarDP=55 GT:AD:DP:GQ:PL:SB 1:26,29,0:55:99:114,0,1242:17,9,20,9 +chrX 2212008 . T . . END=2212018 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1583 +chrX 2212019 . G A, 80.04 . AS_QUALapprox=|90|0;AS_VarDP=31|33|0;BaseQRankSum=0.759;DP=66;MQRankSum=-6.159;QUALapprox=90;RAW_GT_COUNT=0,0,1;RAW_MQandDP=207929,66;ReadPosRankSum=-1.026;VarDP=64 GT:AD:DP:GQ:PL:SB 1:31,33,0:64:90:90,0,1371:19,12,20,13 +chrX 2212020 . G . . END=2212048 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1789 +chrX 2212049 . G A, 45.04 . AS_QUALapprox=|55|0;AS_VarDP=35|35|0;BaseQRankSum=1.092;DP=74;MQRankSum=-6.389;QUALapprox=55;RAW_GT_COUNT=0,0,1;RAW_MQandDP=232850,74;ReadPosRankSum=-1.334;VarDP=70 GT:AD:DP:GQ:PL:SB 1:35,35,0:70:55:55,0,1126:20,15,19,16 +chrX 2212050 . G . . END=2212086 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1800 +chrX 2212087 . C . . END=2212087 GT:DP:GQ:MIN_DP:PL 0:70:19:70:0,19 +chrX 2212088 . G . . END=2212174 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,124 +chrX 2212175 . A T, 308.04 . AS_QUALapprox=|318|0;AS_VarDP=23|35|0;BaseQRankSum=-1.417;DP=64;MQRankSum=0.000;QUALapprox=318;RAW_GT_COUNT=0,0,1;RAW_MQandDP=228825,64;ReadPosRankSum=0.199;VarDP=58 GT:AD:DP:GQ:PL:SB 1:23,35,0:58:99:318,0,1093:11,12,14,21 +chrX 2212176 . T . . END=2212920 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,299 +chrX 2212921 . A G, 0.50 . AS_QUALapprox=|9|0;AS_VarDP=17|23|0;BaseQRankSum=1.965;DP=44;MQRankSum=1.139;QUALapprox=9;RAW_GT_COUNT=0,0,1;RAW_MQandDP=153309,44;ReadPosRankSum=-0.061;VarDP=40 GT:AD:DP:GQ:PL:SB 1:17,23,0:40:9:9,0,875:10,7,15,5 +chrX 2212922 . A . . END=2218875 GT:DP:GQ:MIN_DP:PL 0:67:20:17:0,20 +chrX 2218876 . G A, 80.04 . AS_QUALapprox=|90|0;AS_VarDP=30|32|0;BaseQRankSum=0.456;DP=64;MQRankSum=0.000;QUALapprox=90;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;ReadPosRankSum=0.669;VarDP=62 GT:AD:DP:GQ:PL:SB 1:30,32,0:62:90:90,0,1057:14,16,15,17 +chrX 2218877 . T . . END=2219725 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1130 +chrX 2219726 . T G, 0.26 . AS_QUALapprox=|8|0;AS_VarDP=32|34|0;BaseQRankSum=-2.145;DP=68;MQRankSum=0.000;QUALapprox=8;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;ReadPosRankSum=-0.905;VarDP=66 GT:AD:DP:GQ:PL:SB 1:32,34,0:66:8:8,0,1111:14,18,16,18 +chrX 2219727 . G . . END=2220016 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1800 +chrX 2220017 . A G, 200.04 . AS_QUALapprox=|210|0;AS_VarDP=29|36|0;BaseQRankSum=-0.348;DP=65;MQRankSum=0.000;QUALapprox=210;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;ReadPosRankSum=0.554;VarDP=65 GT:AD:DP:GQ:PL:SB 1:29,36,0:65:99:210,0,1176:16,13,18,18 +chrX 2220018 . A . . END=2220218 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1742 +chrX 2220219 . C T, 307.04 . AS_QUALapprox=|317|0;AS_VarDP=29|39|0;BaseQRankSum=1.214;DP=70;MQRankSum=0.000;QUALapprox=317;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;ReadPosRankSum=-1.253;VarDP=68 GT:AD:DP:GQ:PL:SB 1:29,39,0:68:99:317,0,1225:12,17,21,18 +chrX 2220220 . G . . END=2221644 GT:DP:GQ:MIN_DP:PL 0:61:30:60:0,30 +chrX 2221645 . A G, 50.04 . AS_QUALapprox=|60|0;AS_VarDP=23|23|0;BaseQRankSum=2.007;DP=48;MQRankSum=0.000;QUALapprox=60;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;ReadPosRankSum=1.670;VarDP=46 GT:AD:DP:GQ:PL:SB 1:23,23,0:46:60:60,0,770:11,12,10,13 +chrX 2221646 . T . . END=2222459 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1454 +chrX 2222460 . T C, 14.03 . AS_QUALapprox=|24|0;AS_VarDP=25|26|0;BaseQRankSum=-0.532;DP=56;MQRankSum=0.000;QUALapprox=24;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;ReadPosRankSum=1.678;VarDP=51 GT:AD:DP:GQ:PL:SB 1:25,26,0:51:24:24,0,883:9,16,12,14 +chrX 2222461 . T . . END=2223062 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1472 +chrX 2223063 . A G, 312.04 . AS_QUALapprox=|322|0;AS_VarDP=27|38|0;BaseQRankSum=-1.094;DP=68;MQRankSum=0.000;QUALapprox=322;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;ReadPosRankSum=-1.258;VarDP=65 GT:AD:DP:GQ:PL:SB 1:27,38,0:65:99:322,0,1221:18,9,21,17 +chrX 2223064 . G . . END=2223374 GT:DP:GQ:MIN_DP:PL 0:75:99:75:0,1800 +chrX 2223375 . A G, 188.04 . AS_QUALapprox=|198|0;AS_VarDP=30|38|0;BaseQRankSum=-1.265;DP=68;MQRankSum=0.000;QUALapprox=198;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;ReadPosRankSum=-0.976;VarDP=68 GT:AD:DP:GQ:PL:SB 1:30,38,0:68:99:198,0,1210:16,14,16,22 +chrX 2223376 . T . . END=2224253 GT:DP:GQ:MIN_DP:PL 0:77:99:77:0,1663 +chrX 2224254 . AG A, 441.01 . AS_QUALapprox=|451|0;AS_VarDP=23|33|0;BaseQRankSum=-1.148;DP=61;MQRankSum=0.000;QUALapprox=451;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;ReadPosRankSum=0.748;VarDP=56 GT:AD:DP:GQ:PL:SB 1:23,33,0:56:99:451,0,1485:10,13,15,18 +chrX 2224256 . G A, 441.04 . AS_QUALapprox=|451|0;AS_VarDP=23|33|0;BaseQRankSum=0.093;DP=60;MQRankSum=0.000;QUALapprox=451;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;ReadPosRankSum=0.966;VarDP=56 GT:AD:DP:GQ:PL:SB 1:23,33,0:56:99:451,0,1485:10,13,15,18 +chrX 2224257 . C . . END=2224257 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,1797 +chrX 2224258 . C T, 441.04 . AS_QUALapprox=|451|0;AS_VarDP=23|33|0;BaseQRankSum=1.201;DP=58;MQRankSum=0.000;QUALapprox=451;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;ReadPosRankSum=0.800;VarDP=56 GT:AD:DP:GQ:PL:SB 1:23,33,0:56:99:451,0,1485:10,13,15,18 +chrX 2224259 . G . . END=2226118 GT:DP:GQ:MIN_DP:PL 0:67:89:67:0,89 +chrX 2226119 . G T, 71.04 . AS_QUALapprox=|81|0;AS_VarDP=37|39|0;BaseQRankSum=0.414;DP=79;MQRankSum=0.000;QUALapprox=81;RAW_GT_COUNT=0,0,1;RAW_MQandDP=284400,79;ReadPosRankSum=-0.286;VarDP=76 GT:AD:DP:GQ:PL:SB 1:37,39,0:76:81:81,0,1296:17,20,18,21 +chrX 2226120 . T . . END=2226575 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,119 +chrX 2226576 . G A, 318.04 . AS_QUALapprox=|328|0;AS_VarDP=21|29|0;BaseQRankSum=2.761;DP=50;MQRankSum=-1.187;QUALapprox=328;RAW_GT_COUNT=0,0,1;RAW_MQandDP=178325,50;ReadPosRankSum=0.541;VarDP=50 GT:AD:DP:GQ:PL:SB 1:21,29,0:50:99:328,0,1008:9,12,10,19 +chrX 2226577 . G . . END=2227344 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,945 +chrX 2227345 . G A, 508.04 . AS_QUALapprox=|518|0;AS_VarDP=22|32|0;BaseQRankSum=3.458;DP=57;MQRankSum=-0.791;QUALapprox=518;RAW_GT_COUNT=0,0,1;RAW_MQandDP=203200,57;ReadPosRankSum=-0.387;VarDP=54 GT:AD:DP:GQ:PL:SB 1:22,32,0:54:99:518,0,1418:8,14,14,18 +chrX 2227346 . A . . END=2227357 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1597 +chrX 2227358 . G A, 498.04 . AS_QUALapprox=|508|0;AS_VarDP=20|30|0;BaseQRankSum=2.905;DP=54;MQRankSum=-0.776;QUALapprox=508;RAW_GT_COUNT=0,0,1;RAW_MQandDP=192400,54;ReadPosRankSum=-1.050;VarDP=50 GT:AD:DP:GQ:PL:SB 1:20,30,0:50:99:508,0,1349:6,14,14,16 +chrX 2227359 . A . . END=2227593 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,681 +chrX 2227594 . GA G, 355.01 . AS_QUALapprox=|365|0;AS_VarDP=8|20|0;BaseQRankSum=1.139;DP=42;MQRankSum=0.000;QUALapprox=365;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151200,42;ReadPosRankSum=0.229;VarDP=28 GT:AD:DP:GQ:PL:SB 1:8,20,0:28:99:365,0,594:1,7,3,17 +chrX 2227596 . A . . END=2227761 GT:DP:GQ:MIN_DP:PL 0:20:45:20:0,45 +chrX 2227762 . A . . END=2227762 GT:DP:GQ:MIN_DP:PL 0:4:0:4:0,0 +chrX 2227763 . G . . END=2227769 GT:DP:GQ:MIN_DP:PL 0:6:35:5:0,35 +chrX 2227770 . A . . END=2227770 GT:DP:GQ:MIN_DP:PL 0:4:10:4:0,10 +chrX 2227771 . G . . END=2227776 GT:DP:GQ:MIN_DP:PL 0:4:25:3:0,25 +chrX 2227777 . G . . END=2227778 GT:DP:GQ:MIN_DP:PL 0:3:0:3:0,0 +chrX 2227779 . G . . END=2227779 GT:DP:GQ:MIN_DP:PL 0:3:25:3:0,25 +chrX 2227780 . G . . END=2227780 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 2227781 . A . . END=2227781 GT:DP:GQ:MIN_DP:PL 0:3:45:3:0,45 +chrX 2227782 . A . . END=2227782 GT:DP:GQ:MIN_DP:PL 0:3:0:3:0,0 +chrX 2227783 . G . . END=2227784 GT:DP:GQ:MIN_DP:PL 0:3:24:3:0,24 +chrX 2227785 . G . . END=2227785 GT:DP:GQ:MIN_DP:PL 0:3:0:3:0,0 +chrX 2227786 . A . . END=2227789 GT:DP:GQ:MIN_DP:PL 0:3:35:3:0,35 +chrX 2227790 . G . . END=2227790 GT:DP:GQ:MIN_DP:PL 0:2:10:2:0,10 +chrX 2227791 . G . . END=2227792 GT:DP:GQ:MIN_DP:PL 0:3:35:2:0,35 +chrX 2227793 . A . . END=2227793 GT:DP:GQ:MIN_DP:PL 0:3:0:3:0,0 +chrX 2227794 . A . . END=2227794 GT:DP:GQ:MIN_DP:PL 0:3:25:3:0,25 +chrX 2227795 . G . . END=2227795 GT:DP:GQ:MIN_DP:PL 0:3:14:3:0,14 +chrX 2227796 . G . . END=2227797 GT:DP:GQ:MIN_DP:PL 0:4:25:3:0,25 +chrX 2227798 . A . . END=2227799 GT:DP:GQ:MIN_DP:PL 0:4:0:4:0,0 +chrX 2227800 . G . . END=2227801 GT:DP:GQ:MIN_DP:PL 0:4:90:4:0,90 +chrX 2227802 . A . . END=2227803 GT:DP:GQ:MIN_DP:PL 0:4:10:4:0,10 +chrX 2227804 . G . . END=2227810 GT:DP:GQ:MIN_DP:PL 0:5:25:5:0,25 +chrX 2227811 . A . . END=2227811 GT:DP:GQ:MIN_DP:PL 0:4:0:4:0,0 +chrX 2227812 . G . . END=2227828 GT:DP:GQ:MIN_DP:PL 0:3:35:3:0,35 +chrX 2227829 . A . . END=2227829 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 2227830 . G . . END=2227834 GT:DP:GQ:MIN_DP:PL 0:2:45:2:0,45 +chrX 2227835 . A . . END=2227835 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 2227836 . G . . END=2227840 GT:DP:GQ:MIN_DP:PL 0:2:45:2:0,45 +chrX 2227841 . A . . END=2227841 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 2227842 . G . . END=2227845 GT:DP:GQ:MIN_DP:PL 0:3:45:3:0,45 +chrX 2227846 . G . . END=2227846 GT:DP:GQ:MIN_DP:PL 0:4:0:4:0,0 +chrX 2227847 . A . . END=2227892 GT:DP:GQ:MIN_DP:PL 0:4:29:4:0,29 +chrX 2227893 . G . . END=2227893 GT:DP:GQ:MIN_DP:PL 0:4:10:4:0,10 +chrX 2227894 . G . . END=2227901 GT:DP:GQ:MIN_DP:PL 0:4:30:4:0,30 +chrX 2227902 . G . . END=2227902 GT:DP:GQ:MIN_DP:PL 0:3:14:3:0,14 +chrX 2227903 . A . . END=2227904 GT:DP:GQ:MIN_DP:PL 0:4:49:4:0,49 +chrX 2227905 . G . . END=2227905 GT:DP:GQ:MIN_DP:PL 0:4:0:4:0,0 +chrX 2227906 . G . . END=2227909 GT:DP:GQ:MIN_DP:PL 0:4:59:4:0,59 +chrX 2227910 . G . . END=2227912 GT:DP:GQ:MIN_DP:PL 0:4:0:4:0,0 +chrX 2227913 . G . . END=2227917 GT:DP:GQ:MIN_DP:PL 0:3:25:3:0,25 +chrX 2227918 . G . . END=2227918 GT:DP:GQ:MIN_DP:PL 0:3:0:3:0,0 +chrX 2227919 . G . . END=2227919 GT:DP:GQ:MIN_DP:PL 0:3:45:3:0,45 +chrX 2227920 . A . . END=2227920 GT:DP:GQ:MIN_DP:PL 0:3:14:3:0,14 +chrX 2227921 . G . . END=2227921 GT:DP:GQ:MIN_DP:PL 0:3:25:3:0,25 +chrX 2227922 . G . . END=2227922 GT:DP:GQ:MIN_DP:PL 0:2:10:2:0,10 +chrX 2227923 . G . . END=2227925 GT:DP:GQ:MIN_DP:PL 0:3:25:3:0,25 +chrX 2227926 . G . . END=2227929 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 2227930 . G . . END=2227931 GT:DP:GQ:MIN_DP:PL 0:2:20:1:0,20 +chrX 2227932 . A . . END=2227932 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 2227933 . G . . END=2227933 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 2227934 . G . . END=2227934 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 2227935 . G . . END=2227935 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 2227936 . A . . END=2227936 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 2227937 . G . . END=2227937 GT:DP:GQ:MIN_DP:PL 0:2:45:2:0,45 +chrX 2227938 . G . . END=2227939 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 2227940 . A . . END=2227941 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 2227942 . G . . END=2227943 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 2227944 . A . . END=2227945 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 2227946 . G . . END=2227947 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 2227948 . A . . END=2227950 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 2227951 . G . . END=2227951 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 2227952 . A . . END=2227953 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 2227954 . G . . END=2227954 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 2227955 . G . . END=2227955 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 2227956 . A . . END=2227957 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 2227958 . G . . END=2227958 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 2227959 . G . . END=2227960 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 2227961 . A . . END=2227962 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 2227963 . G . . END=2227963 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 2227964 . G . . END=2227967 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 2227968 . G . . END=2227968 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 2227969 . A . . END=2227974 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 2227975 . G . . END=2227976 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 2227977 . A . . END=2227978 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 2227979 . G . . END=2227981 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 2227982 . A . . END=2228035 GT:DP:GQ:MIN_DP:PL 0:2:35:1:0,35 +chrX 2228036 . G . . END=2228039 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 2228040 . G . . END=2228042 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 2228043 . A . . END=2228109 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 2228110 . G . . END=2228110 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 2228111 . A . . END=2228111 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 2228112 . G . . END=2228112 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 2228113 . G . . END=2228113 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 2228114 . G . . END=2228114 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 2228115 . A . . END=2228115 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 2228116 . G . . END=2228116 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 2228117 . G . . END=2228117 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 2228118 . G . . END=2228118 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 2228119 . A . . END=2228120 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 2228121 . G . . END=2228123 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 2228124 . A . . END=2228124 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 2228125 . G . . END=2228133 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 2228134 . G . . END=2228134 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 2228135 . G . . END=2228137 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 2228138 . G . . END=2228140 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 2228141 . A . . END=2228145 GT:DP:GQ:MIN_DP:PL 0:2:25:1:0,25 +chrX 2228146 . G . . END=2228146 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 2228147 . G . . END=2228168 GT:DP:GQ:MIN_DP:PL 0:3:55:3:0,55 +chrX 2228169 . A . . END=2228185 GT:DP:GQ:MIN_DP:PL 0:5:0:5:0,0 +chrX 2228186 . G . . END=2228188 GT:DP:GQ:MIN_DP:PL 0:3:45:3:0,45 +chrX 2228189 . A . . END=2228189 GT:DP:GQ:MIN_DP:PL 0:3:15:3:0,15 +chrX 2228190 . G . . END=2228192 GT:DP:GQ:MIN_DP:PL 0:2:45:2:0,45 +chrX 2228193 . G . . END=2228193 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 2228194 . G . . END=2228218 GT:DP:GQ:MIN_DP:PL 0:2:35:2:0,35 +chrX 2228219 . A . . END=2228219 GT:DP:GQ:MIN_DP:PL 0:3:0:3:0,0 +chrX 2228220 . G . . END=2228320 GT:DP:GQ:MIN_DP:PL 0:4:45:4:0,45 +chrX 2228321 . GAGGGAGGGAGGGAGGAAGGGAGGGAGGGAGGGAGGAAGGAAGGGAGGGAGGGAGGGAGGAATGA G, 38.01 . AS_QUALapprox=|48|0;AS_VarDP=2|3|0;DP=13;MQRankSum=0.000;QUALapprox=48;RAW_GT_COUNT=0,0,1;RAW_MQandDP=31614,13;VarDP=5 GT:AD:DP:GQ:PL:SB 1:2,3,0:5:48:48,0,138:2,0,3,0 +chrX 2228386 . A . . END=2228428 GT:DP:GQ:MIN_DP:PL 0:8:99:8:0,209 +chrX 2228429 . A . . END=2228433 GT:DP:GQ:MIN_DP:PL 0:14:6:14:0,6 +chrX 2228434 . A . . END=2229935 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,416 +chrX 2229936 . T C, 5.04 . AS_QUALapprox=|15|0;AS_VarDP=26|26|0;BaseQRankSum=0.080;DP=54;MQRankSum=0.000;QUALapprox=15;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;ReadPosRankSum=-0.311;VarDP=52 GT:AD:DP:GQ:PL:SB 1:26,26,0:52:15:15,0,853:11,15,16,10 +chrX 2229937 . G . . END=2231951 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,153 +chrX 2231952 . C CTCT, 297.01 . AS_QUALapprox=|307|0;AS_VarDP=24|31|0;BaseQRankSum=-0.681;DP=60;MQRankSum=0.000;QUALapprox=307;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;ReadPosRankSum=-0.526;VarDP=55 GT:AD:DP:GQ:PL:SB 1:24,31,0:55:99:307,0,1387:7,17,10,21 +chrX 2231953 . T . . END=2231966 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,1387 +chrX 2231967 . CCTT C, 215.01 . AS_QUALapprox=|225|0;AS_VarDP=22|27|0;BaseQRankSum=-0.206;DP=50;MQRankSum=0.000;QUALapprox=225;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;ReadPosRankSum=-0.894;VarDP=49 GT:AD:DP:GQ:PL:SB 1:22,27,0:49:99:225,0,1215:5,17,7,20 +chrX 2231971 . C . . END=2232032 GT:DP:GQ:MIN_DP:PL 0:45:99:45:0,1110 +chrX 2232033 . C CCTCCTCCCTTACTT, 372.01 . AS_QUALapprox=|382|0;AS_VarDP=19|27|0;BaseQRankSum=1.307;DP=50;MQRankSum=0.000;QUALapprox=382;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;ReadPosRankSum=0.458;VarDP=46 GT:AD:DP:GQ:PL:SB 1:19,27,0:46:99:382,0,1215:5,14,8,19 +chrX 2232034 . C . . END=2232201 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1214 +chrX 2232202 . A T, 263.04 . AS_QUALapprox=|273|0;AS_VarDP=28|35|0;BaseQRankSum=1.096;DP=65;MQRankSum=0.000;QUALapprox=273;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;ReadPosRankSum=1.605;VarDP=63 GT:AD:DP:GQ:PL:SB 1:28,35,0:63:99:273,0,1120:17,11,21,14 +chrX 2232203 . A . . END=2232612 GT:DP:GQ:MIN_DP:PL 0:66:80:66:0,80 +chrX 2232613 . C T, 89.04 . AS_QUALapprox=|99|0;AS_VarDP=30|34|0;BaseQRankSum=-1.025;DP=66;MQRankSum=0.000;QUALapprox=99;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;ReadPosRankSum=-0.040;VarDP=64 GT:AD:DP:GQ:PL:SB 1:30,34,0:64:99:99,0,1102:18,12,16,18 +chrX 2232614 . C . . END=2233370 GT:DP:GQ:MIN_DP:PL 0:70:22:51:0,22 +chrX 2233371 . CTT C,CT, 1236.01 . AS_QUALapprox=|1246|1029|0;AS_VarDP=0|35|26|0;DP=71;QUALapprox=1246;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,35,26,0:61:99:1246,0,217,1088:0,0,30,31 +chrX 2233374 . T . . END=2234507 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,386 +chrX 2234508 . T G, 189.04 . AS_QUALapprox=|199|0;AS_VarDP=28|32|0;BaseQRankSum=2.307;DP=64;MQRankSum=0.000;QUALapprox=199;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;ReadPosRankSum=0.778;VarDP=60 GT:AD:DP:GQ:PL:SB 1:28,32,0:60:99:199,0,1092:12,16,11,21 +chrX 2234509 . T . . END=2236882 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,225 +chrX 2236883 . T TA, 178.01 . AS_QUALapprox=|188|0;AS_VarDP=18|26|0;BaseQRankSum=1.504;DP=51;MQRankSum=0.000;QUALapprox=188;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;ReadPosRankSum=-0.514;VarDP=44 GT:AD:DP:GQ:PL:SB 1:18,26,0:44:99:188,0,659:9,9,14,12 +chrX 2236884 . A . . END=2238330 GT:DP:GQ:MIN_DP:PL 0:62:89:62:0,89 +chrX 2238331 . T G, 182.04 . AS_QUALapprox=|192|0;AS_VarDP=31|37|0;BaseQRankSum=0.370;DP=73;MQRankSum=0.000;QUALapprox=192;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;ReadPosRankSum=0.259;VarDP=68 GT:AD:DP:GQ:PL:SB 1:31,37,0:68:99:192,0,1180:14,17,19,18 +chrX 2238332 . G . . END=2240311 GT:DP:GQ:MIN_DP:PL 0:67:46:67:0,46 +chrX 2240312 . A . . END=2240312 GT:DP:GQ:MIN_DP:PL 0:59:15:59:0,15 +chrX 2240313 . A . . END=2241051 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1643 +chrX 2241052 . C T, 432.04 . AS_QUALapprox=|442|0;AS_VarDP=32|45|0;BaseQRankSum=0.466;DP=79;MQRankSum=0.000;QUALapprox=442;RAW_GT_COUNT=0,0,1;RAW_MQandDP=284400,79;ReadPosRankSum=1.179;VarDP=77 GT:AD:DP:GQ:PL:SB 1:32,45,0:77:99:442,0,1469:14,18,21,24 +chrX 2241053 . G . . END=2241144 GT:DP:GQ:MIN_DP:PL 0:76:99:76:0,1800 +chrX 2241145 . C T, 120.04 . AS_QUALapprox=|130|0;AS_VarDP=36|38|0;BaseQRankSum=1.557;DP=79;MQRankSum=0.000;QUALapprox=130;RAW_GT_COUNT=0,0,1;RAW_MQandDP=284400,79;ReadPosRankSum=-0.784;VarDP=74 GT:AD:DP:GQ:PL:SB 1:36,38,0:74:99:130,0,1190:18,18,19,19 +chrX 2241146 . G . . END=2241724 GT:DP:GQ:MIN_DP:PL 0:55:24:49:0,24 +chrX 2241725 . G A, 40.04 . AS_QUALapprox=|50|0;AS_VarDP=25|26|0;BaseQRankSum=0.134;DP=53;MQRankSum=1.059;QUALapprox=50;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190225,53;ReadPosRankSum=0.594;VarDP=51 GT:AD:DP:GQ:PL:SB 1:25,26,0:51:50:50,0,864:11,14,11,15 +chrX 2241726 . T . . END=2241750 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,1573 +chrX 2241751 . A C, 212.04 . AS_QUALapprox=|222|0;AS_VarDP=23|30|0;BaseQRankSum=-0.745;DP=54;MQRankSum=1.180;QUALapprox=222;RAW_GT_COUNT=0,0,1;RAW_MQandDP=193825,54;ReadPosRankSum=-0.664;VarDP=53 GT:AD:DP:GQ:PL:SB 1:23,30,0:53:99:222,0,1012:12,11,13,17 +chrX 2241752 . T . . END=2243087 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,477 +chrX 2243088 . C G, 1794.04 . AS_QUALapprox=|1804|0;AS_VarDP=0|54|0;DP=54;QUALapprox=1804;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=54 GT:AD:DP:GQ:PL:SB 1:0,54,0:54:99:1804,0,1804:0,0,29,25 +chrX 2243089 . G . . END=2243482 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1786 +chrX 2243483 . T A, 128.04 . AS_QUALapprox=|138|0;AS_VarDP=29|35|0;BaseQRankSum=-1.257;DP=67;MQRankSum=0.000;QUALapprox=138;RAW_GT_COUNT=0,0,1;RAW_MQandDP=238500,67;ReadPosRankSum=-0.722;VarDP=64 GT:AD:DP:GQ:PL:SB 1:29,35,0:64:99:138,0,1124:15,14,20,15 +chrX 2243484 . T . . END=2243630 GT:DP:GQ:MIN_DP:PL 0:73:99:73:0,1800 +chrX 2243631 . T C, 9.06 . AS_QUALapprox=|19|0;AS_VarDP=29|32|0;BaseQRankSum=-1.082;DP=61;MQRankSum=0.000;QUALapprox=19;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;ReadPosRankSum=-0.152;VarDP=61 GT:AD:DP:GQ:PL:SB 1:29,32,0:61:19:19,0,966:14,15,18,14 +chrX 2243632 . G . . END=2243797 GT:DP:GQ:MIN_DP:PL 0:39:34:37:0,34 +chrX 2243798 . T TG, 244.01 . AS_QUALapprox=|856|0;AS_VarDP=0|20|0;DP=39;QUALapprox=856;RAW_GT_COUNT=0,0,1;RAW_MQandDP=138400,39;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:856,0,923:0,0,6,14 +chrX 2243799 . T . . END=2243801 GT:DP:GQ:MIN_DP:PL 0:39:74:39:0,74 +chrX 2243802 . T TGTTTTG, 334.01 . AS_QUALapprox=|914|0;AS_VarDP=0|22|0;DP=41;QUALapprox=914;RAW_GT_COUNT=0,0,1;RAW_MQandDP=144704,41;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:914,0,997:0,0,6,16 +chrX 2243803 . T . . END=2243808 GT:DP:GQ:MIN_DP:PL 0:37:53:37:0,53 +chrX 2243809 . T TTTG, 57.01 . AS_QUALapprox=|67|0;AS_VarDP=19|21|0;BaseQRankSum=1.148;DP=43;MQRankSum=-1.326;QUALapprox=67;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151904,43;ReadPosRankSum=1.165;VarDP=40 GT:AD:DP:GQ:PL:SB 1:19,21,0:40:67:67,0,865:7,12,8,13 +chrX 2243810 . T . . END=2244301 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1096 +chrX 2244302 . C CCTCTCT,CCTCTCTCT, 1930.01 . AS_QUALapprox=|1581|1940|0;AS_VarDP=0|22|33|0;DP=71;QUALapprox=1940;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;VarDP=55 GT:AD:DP:GQ:PL:SB 2:0,22,33,0:55:99:1940,359,0,1537:0,0,32,23 +chrX 2244303 . C . . END=2244617 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1800 +chrX 2244618 . A G, 0.02 . AS_QUALapprox=|4|0;AS_VarDP=29|32|0;BaseQRankSum=-1.908;DP=62;MQRankSum=0.000;QUALapprox=4;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;ReadPosRankSum=-1.835;VarDP=61 GT:AD:DP:GQ:PL:SB 1:29,32,0:61:4:4,0,972:12,17,14,18 +chrX 2244619 . A . . END=2244682 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,109 +chrX 2244683 . TTA T, 1731.01 . AS_QUALapprox=|1741|0;AS_VarDP=0|46|0;DP=59;QUALapprox=1741;RAW_GT_COUNT=0,0,1;RAW_MQandDP=210244,59;VarDP=46 GT:AD:DP:GQ:PL:SB 1:0,46,0:46:99:1741,0,1741:0,0,23,23 +chrX 2244686 . T . . END=2244851 GT:DP:GQ:MIN_DP:PL 0:64:90:64:0,90 +chrX 2244852 . T C, 342.04 . AS_QUALapprox=|352|0;AS_VarDP=22|31|0;BaseQRankSum=1.752;DP=57;MQRankSum=-1.714;QUALapprox=352;RAW_GT_COUNT=0,0,1;RAW_MQandDP=200188,57;ReadPosRankSum=0.063;VarDP=53 GT:AD:DP:GQ:PL:SB 1:22,31,0:53:99:352,0,1051:10,12,19,12 +chrX 2244853 . A . . END=2244943 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1357 +chrX 2244944 . A T, 1831.04 . AS_QUALapprox=|1841|0;AS_VarDP=0|56|0;DP=60;QUALapprox=1841;RAW_GT_COUNT=0,0,1;RAW_MQandDP=215306,60;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,56,0:56:99:1841,0,1841:0,0,24,32 +chrX 2244945 . C . . END=2245061 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1800 +chrX 2245062 . A G, 2117.04 . AS_QUALapprox=|2127|0;AS_VarDP=0|64|0;DP=66;QUALapprox=2127;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,64,0:64:99:2127,0,2127:0,0,35,29 +chrX 2245063 . G . . END=2245529 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1493 +chrX 2245530 . G A, 10.05 . AS_QUALapprox=|20|0;AS_VarDP=23|24|0;BaseQRankSum=-0.752;DP=49;MQRankSum=1.491;QUALapprox=20;RAW_GT_COUNT=0,0,1;RAW_MQandDP=175250,49;ReadPosRankSum=-1.342;VarDP=47 GT:AD:DP:GQ:PL:SB 1:23,24,0:47:20:20,0,754:10,13,6,18 +chrX 2245531 . A . . END=2245694 GT:DP:GQ:MIN_DP:PL 0:45:99:45:0,1235 +chrX 2245695 . T C, 1228.04 . AS_QUALapprox=|1238|0;AS_VarDP=0|40|0;DP=43;QUALapprox=1238;RAW_GT_COUNT=0,0,1;RAW_MQandDP=153874,43;VarDP=40 GT:AD:DP:GQ:PL:SB 1:0,40,0:40:99:1238,0,1238:0,0,27,13 +chrX 2245696 . G . . END=2245728 GT:DP:GQ:MIN_DP:PL 0:38:99:38:0,1016 +chrX 2245729 . G A, 481.04 . AS_QUALapprox=|491|0;AS_VarDP=11|26|0;BaseQRankSum=0.291;DP=40;MQRankSum=-0.890;QUALapprox=491;RAW_GT_COUNT=0,0,1;RAW_MQandDP=143074,40;ReadPosRankSum=-0.499;VarDP=37 GT:AD:DP:GQ:PL:SB 1:11,26,0:37:99:491,0,844:8,3,18,8 +chrX 2245730 . G . . END=2245762 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,928 +chrX 2245763 . C T, 204.04 . AS_QUALapprox=|214|0;AS_VarDP=12|18|0;BaseQRankSum=0.316;DP=33;MQRankSum=-0.748;QUALapprox=214;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118449,33;ReadPosRankSum=1.758;VarDP=30 GT:AD:DP:GQ:PL:SB 1:12,18,0:30:99:214,0,586:10,2,9,9 +chrX 2245764 . T . . END=2245969 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,630 +chrX 2245970 . C A, 1548.04 . AS_QUALapprox=|1558|0;AS_VarDP=0|42|0;DP=46;QUALapprox=1558;RAW_GT_COUNT=0,0,1;RAW_MQandDP=155525,46;VarDP=42 GT:AD:DP:GQ:PL:SB 1:0,42,0:42:99:1558,0,1558:0,0,25,17 +chrX 2245971 . A . . END=2246745 GT:DP:GQ:MIN_DP:PL 0:62:54:52:0,54 +chrX 2246746 . AAG A, 439.01 . AS_QUALapprox=|449|0;AS_VarDP=10|23|0;BaseQRankSum=-0.631;DP=35;MQRankSum=2.752;QUALapprox=449;RAW_GT_COUNT=0,0,1;RAW_MQandDP=120000,35;ReadPosRankSum=-0.804;VarDP=33 GT:AD:DP:GQ:PL:SB 1:10,23,0:33:99:449,0,891:8,2,15,8 +chrX 2246749 . A . . END=2246803 GT:DP:GQ:MIN_DP:PL 0:40:99:40:0,960 +chrX 2246804 . C T, 281.04 . AS_QUALapprox=|291|0;AS_VarDP=18|30|0;BaseQRankSum=-2.016;DP=50;MQRankSum=0.000;QUALapprox=291;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;ReadPosRankSum=1.502;VarDP=48 GT:AD:DP:GQ:PL:SB 1:18,30,0:48:99:291,0,907:8,10,16,14 +chrX 2246805 . T . . END=2246905 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1656 +chrX 2246906 . A G, 1950.04 . AS_QUALapprox=|1960|0;AS_VarDP=1|60|0;BaseQRankSum=-0.275;DP=64;MQRankSum=0.000;QUALapprox=1960;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;ReadPosRankSum=1.051;VarDP=61 GT:AD:DP:GQ:PL:SB 1:1,60,0:61:99:1960,0,1995:0,1,33,27 +chrX 2246907 . T . . END=2247034 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1800 +chrX 2247035 . G C, 1771.04 . AS_QUALapprox=|1781|0;AS_VarDP=0|54|0;DP=56;QUALapprox=1781;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201025,56;VarDP=54 GT:AD:DP:GQ:PL:SB 1:0,54,0:54:99:1781,0,1781:0,0,27,27 +chrX 2247036 . C . . END=2247253 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1678 +chrX 2247254 . A G, 1697.04 . AS_QUALapprox=|1707|0;AS_VarDP=0|53|0;DP=57;QUALapprox=1707;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=53 GT:AD:DP:GQ:PL:SB 1:0,53,0:53:99:1707,0,1707:0,0,21,32 +chrX 2247255 . T . . END=2247538 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1329 +chrX 2247539 . A C, 645.04 . AS_QUALapprox=|655|0;AS_VarDP=11|31|0;BaseQRankSum=-0.543;DP=43;MQRankSum=0.309;QUALapprox=655;RAW_GT_COUNT=0,0,1;RAW_MQandDP=149321,43;ReadPosRankSum=-0.272;VarDP=42 GT:AD:DP:GQ:PL:SB 1:11,31,0:42:99:655,0,1028:6,5,18,13 +chrX 2247540 . G . . END=2247654 GT:DP:GQ:MIN_DP:PL 0:42:99:42:0,962 +chrX 2247655 . CAA C, 644.01 . AS_QUALapprox=|654|0;AS_VarDP=6|28|0;BaseQRankSum=1.293;DP=49;MQRankSum=0.872;QUALapprox=654;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169365,49;ReadPosRankSum=0.897;VarDP=34 GT:AD:DP:GQ:PL:SB 1:6,28,0:34:99:654,0,780:0,6,11,17 +chrX 2247658 . A . . END=2247966 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1564 +chrX 2247967 . G C, 1791.04 . AS_QUALapprox=|1801|0;AS_VarDP=0|56|0;DP=57;QUALapprox=1801;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,56,0:56:99:1801,0,1801:0,0,26,30 +chrX 2247968 . T . . END=2248127 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,1369 +chrX 2248128 . C T, 1651.04 . AS_QUALapprox=|1661|0;AS_VarDP=0|50|0;DP=54;QUALapprox=1661;RAW_GT_COUNT=0,0,1;RAW_MQandDP=193250,54;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,50,0:50:99:1661,0,1661:0,0,23,27 +chrX 2248129 . C . . END=2248284 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1711 +chrX 2248285 . T C, 63.04 . AS_QUALapprox=|73|0;AS_VarDP=31|36|0;BaseQRankSum=-1.586;DP=68;MQRankSum=-0.898;QUALapprox=73;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244225,68;ReadPosRankSum=-1.038;VarDP=67 GT:AD:DP:GQ:PL:SB 1:31,36,0:67:73:73,0,1090:18,13,20,16 +chrX 2248286 . A . . END=2248292 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1800 +chrX 2248293 . T C, 2353.04 . AS_QUALapprox=|2363|0;AS_VarDP=0|64|0;DP=66;QUALapprox=2363;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237025,66;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,64,0:64:99:2363,0,2363:0,0,36,28 +chrX 2248294 . G . . END=2248431 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,635 +chrX 2248432 . C CAAAAAA,CAAAAAAA, 833.01 . AS_QUALapprox=|681|843|0;AS_VarDP=1|7|13|0;BaseQRankSum=-0.297;DP=37;MQRankSum=2.320;QUALapprox=843;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122828,37;ReadPosRankSum=-1.571;VarDP=21 GT:AD:DP:GQ:PL:SB 2:1,7,13,0:21:99:843,162,0,607:1,0,9,11 +chrX 2248433 . A . . END=2248626 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,643 +chrX 2248627 . G A, 1744.04 . AS_QUALapprox=|1754|0;AS_VarDP=0|40|0;DP=42;QUALapprox=1754;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133480,42;VarDP=40 GT:AD:DP:GQ:PL:SB 1:0,40,0:40:99:1754,0,1754:0,0,16,24 +chrX 2248628 . A AAG,AAAG, 1405.01 . AS_QUALapprox=|1344|1415|0;AS_VarDP=0|14|19|0;DP=42;QUALapprox=1415;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133480,42;VarDP=33 GT:AD:DP:GQ:PL:SB 2:0,14,19,0:33:71:1415,71,0,912:0,0,13,20 +chrX 2248629 . A . . END=2248656 GT:DP:GQ:MIN_DP:PL 0:37:99:37:0,1121 +chrX 2248657 . A AGAAAAG, 1630.01 . AS_QUALapprox=|1640|0;AS_VarDP=0|37|0;DP=41;QUALapprox=1640;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133880,41;VarDP=37 GT:AD:DP:GQ:PL:SB 1:0,37,0:37:99:1640,0,1640:0,0,17,20 +chrX 2248658 . G . . END=2249075 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1244 +chrX 2249076 . T C, 1687.04 . AS_QUALapprox=|1697|0;AS_VarDP=0|51|0;DP=52;QUALapprox=1697;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=51 GT:AD:DP:GQ:PL:SB 1:0,51,0:51:99:1697,0,1697:0,0,24,27 +chrX 2249077 . G . . END=2249190 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1350 +chrX 2249191 . C T,CTT, 1004.01 . AS_QUALapprox=|0|1014|0;AS_VarDP=0|0|31|0;DP=45;QUALapprox=1014;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158325,45;VarDP=31 GT:AD:DP:GQ:PL:SB 2:0,0,31,0:31:99:1014,1546,0,1280:0,0,21,10 +chrX 2249192 . T . . END=2249481 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,655 +chrX 2249482 . T C, 1845.04 . AS_QUALapprox=|1855|0;AS_VarDP=0|59|0;DP=62;QUALapprox=1855;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:1855,0,1855:0,0,32,27 +chrX 2249483 . G . . END=2250160 GT:DP:GQ:MIN_DP:PL 0:48:44:47:0,44 +chrX 2250161 . C CA,CAA, 731.01 . AS_QUALapprox=|530|741|0;AS_VarDP=0|8|19|0;DP=51;QUALapprox=741;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172346,51;VarDP=27 GT:AD:DP:GQ:PL:SB 2:0,8,19,0:27:99:741,211,0,551:0,0,15,12 +chrX 2250162 . A . . END=2251281 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1205 +chrX 2251282 . T C, 240.04 . AS_QUALapprox=|250|0;AS_VarDP=27|36|0;BaseQRankSum=-0.735;DP=66;MQRankSum=0.000;QUALapprox=250;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;ReadPosRankSum=-0.472;VarDP=63 GT:AD:DP:GQ:PL:SB 1:27,36,0:63:99:250,0,1111:10,17,20,16 +chrX 2251283 . A . . END=2251915 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1578 +chrX 2251916 . C T, 472.04 . AS_QUALapprox=|482|0;AS_VarDP=25|39|0;BaseQRankSum=-0.063;DP=67;MQRankSum=0.000;QUALapprox=482;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;ReadPosRankSum=0.592;VarDP=64 GT:AD:DP:GQ:PL:SB 1:25,39,0:64:99:482,0,1245:12,13,21,18 +chrX 2251917 . T . . END=2251999 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1800 +chrX 2252000 . G T, 1846.04 . AS_QUALapprox=|1856|0;AS_VarDP=0|54|0;DP=57;QUALapprox=1856;RAW_GT_COUNT=0,0,1;RAW_MQandDP=204274,57;VarDP=54 GT:AD:DP:GQ:PL:SB 1:0,54,0:54:99:1856,0,1856:0,0,31,23 +chrX 2252001 . G . . END=2252189 GT:DP:GQ:MIN_DP:PL 0:73:99:73:0,1587 +chrX 2252190 . C T, 198.04 . AS_QUALapprox=|208|0;AS_VarDP=37|45|0;BaseQRankSum=-0.680;DP=87;MQRankSum=0.000;QUALapprox=208;RAW_GT_COUNT=0,0,1;RAW_MQandDP=313200,87;ReadPosRankSum=0.750;VarDP=82 GT:AD:DP:GQ:PL:SB 1:37,45,0:82:99:208,0,1424:14,23,22,23 +chrX 2252191 . C . . END=2252238 GT:DP:GQ:MIN_DP:PL 0:81:99:81:0,1800 +chrX 2252239 . AAAAT A, 242.01 . AS_QUALapprox=|252|0;AS_VarDP=34|40|0;BaseQRankSum=-0.733;DP=85;MQRankSum=0.000;QUALapprox=252;RAW_GT_COUNT=0,0,1;RAW_MQandDP=306000,85;ReadPosRankSum=0.166;VarDP=74 GT:AD:DP:GQ:PL:SB 1:34,40,0:74:99:252,0,1765:16,18,16,24 +chrX 2252244 . A . . END=2252434 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1786 +chrX 2252435 . C T, 2069.04 . AS_QUALapprox=|2079|0;AS_VarDP=0|63|0;DP=66;QUALapprox=2079;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,63,0:63:99:2079,0,2079:0,0,30,33 +chrX 2252436 . T . . END=2253346 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,321 +chrX 2253347 . A . . END=2253347 GT:DP:GQ:MIN_DP:PL 0:68:9:68:0,9 +chrX 2253348 . C . . END=2253597 GT:DP:GQ:MIN_DP:PL 0:64:72:64:0,72 +chrX 2253598 . G T, 223.04 . AS_QUALapprox=|233|0;AS_VarDP=26|34|0;BaseQRankSum=-0.521;DP=64;MQRankSum=0.000;QUALapprox=233;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;ReadPosRankSum=1.015;VarDP=60 GT:AD:DP:GQ:PL:SB 1:26,34,0:60:99:233,0,1081:15,11,20,14 +chrX 2253599 . A . . END=2253625 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1800 +chrX 2253626 . C T, 2134.04 . AS_QUALapprox=|2144|0;AS_VarDP=0|65|0;DP=67;QUALapprox=2144;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,65,0:65:99:2144,0,2144:0,0,38,27 +chrX 2253627 . T . . END=2253840 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1800 +chrX 2253841 . A C, 75.04 . AS_QUALapprox=|85|0;AS_VarDP=37|41|0;BaseQRankSum=-0.992;DP=79;MQRankSum=0.000;QUALapprox=85;RAW_GT_COUNT=0,0,1;RAW_MQandDP=284400,79;ReadPosRankSum=-1.011;VarDP=78 GT:AD:DP:GQ:PL:SB 1:37,41,0:78:85:85,0,1320:18,19,19,22 +chrX 2253842 . C . . END=2253985 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1449 +chrX 2253986 . G A, 100.04 . AS_QUALapprox=|110|0;AS_VarDP=22|24|0;BaseQRankSum=1.585;DP=49;MQRankSum=0.000;QUALapprox=110;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;ReadPosRankSum=2.013;VarDP=46 GT:AD:DP:GQ:PL:SB 1:22,24,0:46:99:110,0,804:11,11,11,13 +chrX 2253987 . G . . END=2254058 GT:DP:GQ:MIN_DP:PL 0:47:99:47:0,1424 +chrX 2254059 . C CA, 117.01 . AS_QUALapprox=|127|0;AS_VarDP=23|28|0;BaseQRankSum=0.890;DP=58;MQRankSum=0.000;QUALapprox=127;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;ReadPosRankSum=-1.089;VarDP=51 GT:AD:DP:GQ:PL:SB 1:23,28,0:51:99:127,0,785:10,13,13,15 +chrX 2254060 . A . . END=2254708 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1800 +chrX 2254709 . C T, 293.04 . AS_QUALapprox=|303|0;AS_VarDP=27|32|0;BaseQRankSum=3.442;DP=60;MQRankSum=0.000;QUALapprox=303;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;ReadPosRankSum=0.967;VarDP=59 GT:AD:DP:GQ:PL:SB 1:27,32,0:59:99:303,0,1091:15,12,20,12 +chrX 2254710 . G . . END=2255232 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,348 +chrX 2255233 . A G, 164.04 . AS_QUALapprox=|174|0;AS_VarDP=28|33|0;BaseQRankSum=-0.801;DP=64;MQRankSum=0.000;QUALapprox=174;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;ReadPosRankSum=-2.447;VarDP=61 GT:AD:DP:GQ:PL:SB 1:28,33,0:61:99:174,0,1117:18,10,11,22 +chrX 2255234 . A . . END=2255296 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1800 +chrX 2255297 . C T, 43.04 . AS_QUALapprox=|53|0;AS_VarDP=31|32|0;BaseQRankSum=-0.136;DP=66;MQRankSum=0.000;QUALapprox=53;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;ReadPosRankSum=-1.107;VarDP=63 GT:AD:DP:GQ:PL:SB 1:31,32,0:63:53:53,0,1049:10,21,21,11 +chrX 2255298 . G . . END=2255757 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,189 +chrX 2255758 . C T, 104.04 . AS_QUALapprox=|114|0;AS_VarDP=29|31|0;BaseQRankSum=0.808;DP=62;MQRankSum=0.000;QUALapprox=114;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;ReadPosRankSum=-1.769;VarDP=60 GT:AD:DP:GQ:PL:SB 1:29,31,0:60:99:114,0,997:18,11,16,15 +chrX 2255759 . A . . END=2256166 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1330 +chrX 2256167 . T A, 60.04 . AS_QUALapprox=|70|0;AS_VarDP=25|26|0;BaseQRankSum=0.558;DP=54;MQRankSum=-0.941;QUALapprox=70;RAW_GT_COUNT=0,0,1;RAW_MQandDP=193504,54;ReadPosRankSum=-0.094;VarDP=51 GT:AD:DP:GQ:PL:SB 1:25,26,0:51:70:70,0,837:11,14,12,14 +chrX 2256168 . A . . END=2256790 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,162 +chrX 2256791 . C CA, 265.01 . AS_QUALapprox=|275|0;AS_VarDP=20|31|0;BaseQRankSum=0.082;DP=59;MQRankSum=0.000;QUALapprox=275;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;ReadPosRankSum=0.434;VarDP=51 GT:AD:DP:GQ:PL:SB 1:20,31,0:51:99:275,0,829:12,8,15,16 +chrX 2256792 . A . . END=2256853 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1800 +chrX 2256854 . TC T, 2202.01 . AS_QUALapprox=|2212|0;AS_VarDP=0|68|0;DP=73;QUALapprox=2212;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,68,0:68:99:2212,0,2212:0,0,39,29 +chrX 2256856 . C . . END=2257333 GT:DP:GQ:MIN_DP:PL 0:73:99:73:0,258 +chrX 2257334 . C T, 95.04 . AS_QUALapprox=|105|0;AS_VarDP=30|32|0;BaseQRankSum=1.472;DP=64;MQRankSum=0.000;QUALapprox=105;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;ReadPosRankSum=-0.402;VarDP=62 GT:AD:DP:GQ:PL:SB 1:30,32,0:62:99:105,0,1037:12,18,18,14 +chrX 2257335 . G . . END=2257929 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1578 +chrX 2257930 . G C, 263.04 . AS_QUALapprox=|273|0;AS_VarDP=27|35|0;BaseQRankSum=0.278;DP=65;MQRankSum=1.171;QUALapprox=273;RAW_GT_COUNT=0,0,1;RAW_MQandDP=233425,65;ReadPosRankSum=1.094;VarDP=62 GT:AD:DP:GQ:PL:SB 1:27,35,0:62:99:273,0,1091:13,14,17,18 +chrX 2257931 . A . . END=2258300 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1454 +chrX 2258301 . A G, 441.04 . AS_QUALapprox=|451|0;AS_VarDP=18|30|0;BaseQRankSum=1.646;DP=50;MQRankSum=0.000;QUALapprox=451;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;ReadPosRankSum=0.650;VarDP=48 GT:AD:DP:GQ:PL:SB 1:18,30,0:48:99:451,0,1011:10,8,18,12 +chrX 2258302 . G . . END=2259382 GT:DP:GQ:MIN_DP:PL 0:68:60:62:0,60 +chrX 2259383 . T G, 911.04 . AS_QUALapprox=|921|0;AS_VarDP=21|42|0;BaseQRankSum=0.784;DP=65;MQRankSum=-0.673;QUALapprox=921;RAW_GT_COUNT=0,0,1;RAW_MQandDP=229225,65;ReadPosRankSum=1.160;VarDP=63 GT:AD:DP:GQ:PL:SB 1:21,42,0:63:99:921,0,1844:9,12,20,22 +chrX 2259384 . A . . END=2259386 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1800 +chrX 2259387 . GATATATAGATATAT G, 934.01 . AS_QUALapprox=|944|0;AS_VarDP=21|43|0;BaseQRankSum=1.431;DP=65;MQRankSum=-0.666;QUALapprox=944;RAW_GT_COUNT=0,0,1;RAW_MQandDP=229225,65;ReadPosRankSum=0.280;VarDP=64 GT:AD:DP:GQ:PL:SB 1:21,43,0:64:99:944,0,1879:9,12,21,22 +chrX 2259402 . A . . END=2259621 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1689 +chrX 2259622 . G T, 1701.04 . AS_QUALapprox=|1711|0;AS_VarDP=0|52|0;DP=53;QUALapprox=1711;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:1711,0,1711:0,0,33,19 +chrX 2259623 . T . . END=2259671 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1598 +chrX 2259672 . G . . END=2259672 GT:DP:GQ:MIN_DP:PL 0:66:3:66:0,3 +chrX 2259673 . T . . END=2259911 GT:DP:GQ:MIN_DP:PL 0:80:99:80:0,1800 +chrX 2259912 . G T, 2480.04 . AS_QUALapprox=|2490|0;AS_VarDP=0|76|0;DP=78;QUALapprox=2490;RAW_GT_COUNT=0,0,1;RAW_MQandDP=280800,78;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,76,0:76:99:2490,0,2490:0,0,40,36 +chrX 2259913 . G . . END=2260010 GT:DP:GQ:MIN_DP:PL 0:76:99:76:0,1800 +chrX 2260011 . G A, 139.04 . AS_QUALapprox=|149|0;AS_VarDP=33|37|0;BaseQRankSum=0.548;DP=71;MQRankSum=0.000;QUALapprox=149;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;ReadPosRankSum=-0.412;VarDP=70 GT:AD:DP:GQ:PL:SB 1:33,37,0:70:99:149,0,1246:23,10,24,13 +chrX 2260012 . T . . END=2261431 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,108 +chrX 2261432 . T C, 1885.04 . AS_QUALapprox=|1895|0;AS_VarDP=0|58|0;DP=59;QUALapprox=1895;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,58,0:58:99:1895,0,1895:0,0,31,27 +chrX 2261433 . G . . END=2261627 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1553 +chrX 2261628 . T C, 149.04 . AS_QUALapprox=|159|0;AS_VarDP=29|33|0;BaseQRankSum=0.897;DP=63;MQRankSum=-0.905;QUALapprox=159;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223929,63;ReadPosRankSum=-0.303;VarDP=62 GT:AD:DP:GQ:PL:SB 1:29,33,0:62:99:159,0,1097:11,18,21,12 +chrX 2261629 . G . . END=2261882 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,119 +chrX 2261883 . G T, 574.04 . AS_QUALapprox=|584|0;AS_VarDP=26|44|0;BaseQRankSum=0.934;DP=73;MQRankSum=0.000;QUALapprox=584;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;ReadPosRankSum=0.693;VarDP=70 GT:AD:DP:GQ:PL:SB 1:26,44,0:70:99:584,0,1398:12,14,19,25 +chrX 2261884 . G . . END=2262716 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1494 +chrX 2262717 . T C, 178.04 . AS_QUALapprox=|188|0;AS_VarDP=30|37|0;BaseQRankSum=-0.795;DP=68;MQRankSum=0.000;QUALapprox=188;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;ReadPosRankSum=0.145;VarDP=67 GT:AD:DP:GQ:PL:SB 1:30,37,0:67:99:188,0,1181:15,15,17,20 +chrX 2262718 . T . . END=2262834 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1800 +chrX 2262835 . CAG C, 2443.01 . AS_QUALapprox=|2453|0;AS_VarDP=0|55|0;DP=58;QUALapprox=2453;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208116,58;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:2453,0,2453:0,0,33,22 +chrX 2262838 . A . . END=2262866 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1762 +chrX 2262867 . A G, 2010.04 . AS_QUALapprox=|2020|0;AS_VarDP=0|62|0;DP=63;QUALapprox=2020;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:2020,0,2020:0,0,39,23 +chrX 2262868 . A . . END=2264066 GT:DP:GQ:MIN_DP:PL 0:65:37:36:0,37 +chrX 2264067 . T C, 2145.04 . AS_QUALapprox=|2155|0;AS_VarDP=0|64|0;DP=66;QUALapprox=2155;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,64,0:64:99:2155,0,2155:0,0,28,36 +chrX 2264068 . C . . END=2264738 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,328 +chrX 2264739 . A C, 0.04 . AS_QUALapprox=|5|0;AS_VarDP=26|31|0;BaseQRankSum=-1.811;DP=59;MQRankSum=1.583;QUALapprox=5;RAW_GT_COUNT=0,0,1;RAW_MQandDP=209189,59;ReadPosRankSum=0.064;VarDP=57 GT:AD:DP:GQ:PL:SB 1:26,31,0:57:5:5,0,908:14,12,19,12 +chrX 2264740 . G . . END=2265299 GT:DP:GQ:MIN_DP:PL 0:28:35:1:0,35 +chrX 2265300 . T . . END=2265301 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 2265302 . T . . END=2265594 GT:DP:GQ:MIN_DP:PL 0:31:70:31:0,70 +chrX 2265595 . AGT A, 41.01 . AS_QUALapprox=|51|0;AS_VarDP=10|12|0;BaseQRankSum=1.828;DP=22;MQRankSum=-0.312;QUALapprox=51;RAW_GT_COUNT=0,0,1;RAW_MQandDP=61279,22;ReadPosRankSum=-0.564;VarDP=22 GT:AD:DP:GQ:PL:SB 1:10,12,0:22:51:51,0,410:6,4,4,8 +chrX 2265598 . G . . END=2265600 GT:DP:GQ:MIN_DP:PL 0:20:99:20:0,270 +chrX 2265601 . C . . END=2265635 GT:DP:GQ:MIN_DP:PL 0:19:0:19:0,0 +chrX 2265636 . G . . END=2266521 GT:DP:GQ:MIN_DP:PL 0:33:62:28:0,62 +chrX 2266522 . G A, 994.04 . AS_QUALapprox=|1004|0;AS_VarDP=4|36|0;BaseQRankSum=2.071;DP=40;MQRankSum=1.169;QUALapprox=1004;RAW_GT_COUNT=0,0,1;RAW_MQandDP=135051,40;ReadPosRankSum=-0.857;VarDP=40 GT:AD:DP:GQ:PL:SB 1:4,36,0:40:99:1004,0,1082:1,3,21,15 +chrX 2266523 . G . . END=2267542 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,318 +chrX 2267543 . C CA, 118.01 . AS_QUALapprox=|128|0;AS_VarDP=18|24|0;BaseQRankSum=-0.858;DP=52;MQRankSum=0.000;QUALapprox=128;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;ReadPosRankSum=-0.979;VarDP=42 GT:AD:DP:GQ:PL:SB 1:18,24,0:42:99:128,0,594:11,7,12,12 +chrX 2267544 . A . . END=2269647 GT:DP:GQ:MIN_DP:PL 0:74:25:64:0,25 +chrX 2269648 . T C, 285.04 . AS_QUALapprox=|295|0;AS_VarDP=34|45|0;BaseQRankSum=-1.078;DP=82;MQRankSum=0.000;QUALapprox=295;RAW_GT_COUNT=0,0,1;RAW_MQandDP=295200,82;ReadPosRankSum=-0.248;VarDP=79 GT:AD:DP:GQ:PL:SB 1:34,45,0:79:99:295,0,1406:18,16,22,23 +chrX 2269649 . G . . END=2269885 GT:DP:GQ:MIN_DP:PL 0:73:99:73:0,1800 +chrX 2269886 . G A, 3186.04 . AS_QUALapprox=|3196|0;AS_VarDP=0|72|0;DP=74;QUALapprox=3196;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266164,74;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,72,0:72:99:3196,0,3196:0,0,34,38 +chrX 2269887 . T . . END=2269891 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1800 +chrX 2269892 . G C, 3152.04 . AS_QUALapprox=|3162|0;AS_VarDP=0|72|0;DP=74;QUALapprox=3162;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266164,74;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,72,0:72:99:3162,0,3162:0,0,33,39 +chrX 2269893 . T . . END=2270542 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1800 +chrX 2270543 . A G, 2364.04 . AS_QUALapprox=|2374|0;AS_VarDP=0|60|0;DP=63;QUALapprox=2374;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:2374,0,2374:0,0,29,31 +chrX 2270544 . G T, 519.04 . AS_QUALapprox=|529|0;AS_VarDP=24|36|0;BaseQRankSum=-2.214;DP=63;MQRankSum=0.000;QUALapprox=529;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;ReadPosRankSum=-0.973;VarDP=60 GT:AD:DP:GQ:PL:SB 1:24,36,0:60:99:529,0,1609:12,12,17,19 +chrX 2270545 . A T, 519.04 . AS_QUALapprox=|529|0;AS_VarDP=24|36|0;BaseQRankSum=-1.862;DP=61;MQRankSum=0.000;QUALapprox=529;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;ReadPosRankSum=-0.741;VarDP=60 GT:AD:DP:GQ:PL:SB 1:24,36,0:60:99:529,0,1609:12,12,17,19 +chrX 2270546 . A . . END=2270777 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1577 +chrX 2270778 . C A, 1794.04 . AS_QUALapprox=|1804|0;AS_VarDP=0|54|0;DP=55;QUALapprox=1804;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=54 GT:AD:DP:GQ:PL:SB 1:0,54,0:54:99:1804,0,1804:0,0,33,21 +chrX 2270779 . C . . END=2270885 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1623 +chrX 2270886 . A G, 1656.04 . AS_QUALapprox=|1666|0;AS_VarDP=0|54|0;DP=54;QUALapprox=1666;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190825,54;VarDP=54 GT:AD:DP:GQ:PL:SB 1:0,54,0:54:99:1666,0,1666:0,0,31,23 +chrX 2270887 . T . . END=2271481 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1530 +chrX 2271482 . C A, 441.04 . AS_QUALapprox=|451|0;AS_VarDP=23|36|0;BaseQRankSum=1.150;DP=61;MQRankSum=0.000;QUALapprox=451;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;ReadPosRankSum=-0.925;VarDP=59 GT:AD:DP:GQ:PL:SB 1:23,36,0:59:99:451,0,1160:12,11,20,16 +chrX 2271483 . C . . END=2271821 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1800 +chrX 2271822 . A G, 57.04 . AS_QUALapprox=|67|0;AS_VarDP=30|34|0;BaseQRankSum=-2.069;DP=64;MQRankSum=0.716;QUALapprox=67;RAW_GT_COUNT=0,0,1;RAW_MQandDP=228675,64;ReadPosRankSum=-2.503;VarDP=64 GT:AD:DP:GQ:PL:SB 1:30,34,0:64:67:67,0,1090:16,14,15,19 +chrX 2271823 . G . . END=2272393 GT:DP:GQ:MIN_DP:PL 0:62:35:61:0,35 +chrX 2272394 . C G, 2288.04 . AS_QUALapprox=|2298|0;AS_VarDP=0|69|0;DP=73;QUALapprox=2298;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,69,0:69:99:2298,0,2298:0,0,26,43 +chrX 2272395 . T . . END=2272723 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1800 +chrX 2272724 . A C, 2147.04 . AS_QUALapprox=|2157|0;AS_VarDP=0|63|0;DP=66;QUALapprox=2157;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,63,0:63:99:2157,0,2157:0,0,33,30 +chrX 2272725 . C . . END=2273206 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1592 +chrX 2273207 . C A, 2006.04 . AS_QUALapprox=|2016|0;AS_VarDP=0|60|0;DP=60;QUALapprox=2016;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:2016,0,2016:0,0,26,34 +chrX 2273208 . A . . END=2273929 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,239 +chrX 2273930 . A C, 2371.04 . AS_QUALapprox=|2381|0;AS_VarDP=0|76|0;DP=78;QUALapprox=2381;RAW_GT_COUNT=0,0,1;RAW_MQandDP=280800,78;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,76,0:76:99:2381,0,2381:0,0,33,43 +chrX 2273931 . G . . END=2274146 GT:DP:GQ:MIN_DP:PL 0:82:99:82:0,1800 +chrX 2274147 . C T, 363.04 . AS_QUALapprox=|373|0;AS_VarDP=31|41|0;BaseQRankSum=0.190;DP=77;MQRankSum=1.178;QUALapprox=373;RAW_GT_COUNT=0,0,1;RAW_MQandDP=276001,77;ReadPosRankSum=-0.290;VarDP=72 GT:AD:DP:GQ:PL:SB 1:31,41,0:72:99:373,0,1345:21,10,20,21 +chrX 2274148 . C . . END=2274584 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1588 +chrX 2274585 . C . . END=2274585 GT:DP:GQ:MIN_DP:PL 0:47:16:47:0,16 +chrX 2274586 . T . . END=2275342 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,100 +chrX 2275343 . C CA,CAAAAAA, 494.01 . AS_QUALapprox=|433|504|0;AS_VarDP=0|16|18|0;DP=46;QUALapprox=504;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162099,46;VarDP=34 GT:AD:DP:GQ:PL:SB 2:0,16,18,0:34:71:504,71,0,643:0,0,24,10 +chrX 2275344 . A . . END=2275513 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1257 +chrX 2275514 . CA C, 1305.01 . AS_QUALapprox=|1315|0;AS_VarDP=0|49|0;DP=63;QUALapprox=1315;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=49 GT:AD:DP:GQ:PL:SB 1:0,49,0:49:99:1315,0,1315:0,0,18,31 +chrX 2275516 . A . . END=2275836 GT:DP:GQ:MIN_DP:PL 0:56:94:56:0,94 +chrX 2275837 . A T, 2227.04 . AS_QUALapprox=|2237|0;AS_VarDP=0|50|0;DP=51;QUALapprox=2237;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,50,0:50:99:2237,0,2237:0,0,25,25 +chrX 2275838 . A T, 2227.04 . AS_QUALapprox=|2237|0;AS_VarDP=0|50|0;DP=51;QUALapprox=2237;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,50,0:50:99:2237,0,2237:0,0,25,25 +chrX 2275839 . A . . END=2276137 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1523 +chrX 2276138 . G . . END=2276138 GT:DP:GQ:MIN_DP:PL 0:72:0:72:0,0 +chrX 2276139 . G . . END=2276347 GT:DP:GQ:MIN_DP:PL 0:79:99:79:0,1800 +chrX 2276348 . G A, 209.04 . AS_QUALapprox=|219|0;AS_VarDP=38|44|0;BaseQRankSum=0.616;DP=83;MQRankSum=0.000;QUALapprox=219;RAW_GT_COUNT=0,0,1;RAW_MQandDP=298800,83;ReadPosRankSum=-0.586;VarDP=82 GT:AD:DP:GQ:PL:SB 1:38,44,0:82:99:219,0,1448:19,19,19,25 +chrX 2276349 . G . . END=2276870 GT:DP:GQ:MIN_DP:PL 0:79:39:62:0,39 +chrX 2276871 . A . . END=2276871 GT:DP:GQ:MIN_DP:PL 0:23:0:23:0,0 +chrX 2276872 . A . . END=2276920 GT:DP:GQ:MIN_DP:PL 0:11:45:11:0,45 +chrX 2276921 . A . . END=2276971 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 2276972 . A . . END=2276974 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 2276975 . T . . END=2276975 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 2276976 . G . . END=2276977 GT:DP:GQ:MIN_DP:PL 0:2:49:2:0,49 +chrX 2276978 . G . . END=2276978 GT:DP:GQ:MIN_DP:PL 0:3:0:3:0,0 +chrX 2276979 . G . . END=2276979 GT:DP:GQ:MIN_DP:PL 0:3:94:3:0,94 +chrX 2276980 . G . . END=2276980 GT:DP:GQ:MIN_DP:PL 0:3:0:3:0,0 +chrX 2276981 . A . . END=2276988 GT:DP:GQ:MIN_DP:PL 0:4:94:4:0,94 +chrX 2276989 . G . . END=2276989 GT:DP:GQ:MIN_DP:PL 0:4:0:4:0,0 +chrX 2276990 . A . . END=2277153 GT:DP:GQ:MIN_DP:PL 0:20:99:20:0,119 +chrX 2277154 . A . . END=2277154 GT:DP:GQ:MIN_DP:PL 0:7:0:7:0,0 +chrX 2277155 . G . . END=2277167 GT:DP:GQ:MIN_DP:PL 0:6:45:6:0,45 +chrX 2277168 . A . . END=2277168 GT:DP:GQ:MIN_DP:PL 0:3:0:3:0,0 +chrX 2277169 . A . . END=2277175 GT:DP:GQ:MIN_DP:PL 0:2:45:2:0,45 +chrX 2277176 . T . . END=2277177 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 2277178 . G . . END=2277178 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 2277179 . A . . END=2277179 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 2277180 . G . . END=2277184 GT:DP:GQ:MIN_DP:PL 0:2:20:1:0,20 +chrX 2277185 . A . . END=2277185 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 2277186 . A . . END=2277186 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 2277187 . C . . END=2277187 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 2277188 . A . . END=2277190 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 2277191 . G . . END=2277191 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 2277192 . A . . END=2277205 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 2277206 . C . . END=2277206 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 2277207 . A . . END=2277207 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 2277208 . A . . END=2277210 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 2277211 . G . . END=2277294 GT:DP:GQ:MIN_DP:PL 0:2:20:1:0,20 +chrX 2277295 . C . . END=2277295 GT:DP:GQ:MIN_DP:PL 0:2:10:2:0,10 +chrX 2277296 . A . . END=2277299 GT:DP:GQ:MIN_DP:PL 0:2:20:1:0,20 +chrX 2277300 . G . . END=2277358 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 2277359 . A . . END=2277478 GT:DP:GQ:MIN_DP:PL 0:7:49:7:0,49 +chrX 2277479 . G . . END=2277479 GT:DP:GQ:MIN_DP:PL 0:4:0:4:0,0 +chrX 2277480 . A . . END=2277498 GT:DP:GQ:MIN_DP:PL 0:5:99:5:0,99 +chrX 2277499 . A . . END=2277501 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 2277502 . G . . END=2277516 GT:DP:GQ:MIN_DP:PL 0:4:45:4:0,45 +chrX 2277517 . A . . END=2277519 GT:DP:GQ:MIN_DP:PL 0:3:0:3:0,0 +chrX 2277520 . A . . END=2277532 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 2277533 . G . . END=2279539 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 2279540 . A . . END=2279573 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 2279574 . T . . END=2279574 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 2279575 . G . . END=2279582 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 2279583 . A . . END=2279583 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 2279584 . A . . END=2279585 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 2279586 . A . . END=2279586 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 2279587 . G . . END=2279599 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 2279600 . A . . END=2279601 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 2279602 . G . . END=2279603 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 2279604 . C . . END=2279605 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 2279606 . A . . END=2279606 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 2279607 . A . . END=2279608 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 2279609 . G . . END=2279613 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 2279614 . G . . END=2279614 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 2279615 . G . . END=2279615 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 2279616 . A . . END=2279616 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 2279617 . G . . END=2279617 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 2279618 . A . . END=2279618 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 2279619 . G . . END=2279619 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 2279620 . A . . END=2279620 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 2279621 . G . . END=2279622 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 2279623 . A . . END=2279624 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 2279625 . G . . END=2279625 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 2279626 . A . . END=2279627 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 2279628 . G . . END=2279631 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 2279632 . A . . END=2279638 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 2279639 . G . . END=2279641 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 2279642 . G . . END=2279646 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 2279647 . G . . END=2279650 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 2279651 . G . . END=2279651 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 2279652 . A . . END=2279652 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 2279653 . G . . END=2279653 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 2279654 . A . . END=2279656 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 2279657 . G . . END=2280184 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 2280185 . G . . END=2280186 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 2280187 . T . . END=2280187 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 2280188 . G . . END=2280192 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 2280193 . G . . END=2280193 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 2280194 . G . . END=2280196 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 2280197 . A . . END=2280199 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 2280200 . G . . END=2280202 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 2280203 . A . . END=2280203 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 2280204 . G . . END=2280216 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 2280217 . C . . END=2280217 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 2280218 . A . . END=2280259 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 2280260 . A . . END=2280262 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 2280263 . A . . END=2280275 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 2280276 . G . . END=2281927 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 2281928 . A . . END=2281941 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 2281942 . G . . END=2281942 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 2281943 . A . . END=2281961 GT:DP:GQ:MIN_DP:PL 0:2:35:1:0,35 +chrX 2281962 . G . . END=2281962 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 2281963 . G . . END=2282004 GT:DP:GQ:MIN_DP:PL 0:2:35:1:0,35 +chrX 2282005 . G . . END=2282005 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 2282006 . G . . END=2282006 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 2282007 . A . . END=2282007 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 2282008 . G . . END=2282013 GT:DP:GQ:MIN_DP:PL 0:2:29:1:0,29 +chrX 2282014 . A . . END=2282222 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 2282223 . G . . END=2282230 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 2282231 . G . . END=2282231 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 2282232 . G . . END=2282251 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 2282252 . A . . END=2282253 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 2282254 . G . . END=2282342 GT:DP:GQ:MIN_DP:PL 0:32:39:16:0,39 +chrX 2282343 . A G, 521.04 . AS_QUALapprox=|531|0;AS_VarDP=1|17|0;BaseQRankSum=-0.177;DP=20;MQRankSum=2.117;QUALapprox=531;RAW_GT_COUNT=0,0,1;RAW_MQandDP=66319,20;ReadPosRankSum=1.737;VarDP=18 GT:AD:DP:GQ:PL:SB 1:1,17,0:18:99:531,0,564:1,0,9,8 +chrX 2282344 . A . . END=2282381 GT:DP:GQ:MIN_DP:PL 0:37:99:37:0,172 +chrX 2282382 . C . . END=2282382 GT:DP:GQ:MIN_DP:PL 0:36:0:36:0,0 +chrX 2282383 . A . . END=2282602 GT:DP:GQ:MIN_DP:PL 0:39:99:39:0,709 +chrX 2282603 . A AGAGAAGAAAGAGGGGAGG, 326.01 . AS_QUALapprox=|336|0;AS_VarDP=9|18|0;BaseQRankSum=-1.349;DP=39;MQRankSum=0.000;QUALapprox=336;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140400,39;ReadPosRankSum=-2.837;VarDP=27 GT:AD:DP:GQ:PL:SB 1:9,18,0:27:99:336,0,736:6,3,13,5 +chrX 2282604 . G . . END=2282766 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,442 +chrX 2282767 . A . . END=2282770 GT:DP:GQ:MIN_DP:PL 0:31:0:31:0,0 +chrX 2282771 . A . . END=2282811 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,139 +chrX 2282812 . AAGAG A, 70.01 . AS_QUALapprox=|80|0;AS_VarDP=12|14|0;BaseQRankSum=2.404;DP=32;MQRankSum=0.000;QUALapprox=80;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;ReadPosRankSum=0.000;VarDP=26 GT:AD:DP:GQ:PL:SB 1:12,14,0:26:80:80,0,670:8,4,10,4 +chrX 2282817 . A . . END=2283339 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,352 +chrX 2283340 . C G, 169.04 . AS_QUALapprox=|179|0;AS_VarDP=28|34|0;BaseQRankSum=-0.427;DP=64;MQRankSum=0.000;QUALapprox=179;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;ReadPosRankSum=0.347;VarDP=62 GT:AD:DP:GQ:PL:SB 1:28,34,0:62:99:179,0,1076:12,16,15,19 +chrX 2283341 . T . . END=2283894 GT:DP:GQ:MIN_DP:PL 0:73:99:73:0,243 +chrX 2283895 . TTCATTCCTTTGAATTCACTCATTCCTTTGAATTCAC T, 1861.01 . AS_QUALapprox=|1871|0;AS_VarDP=0|47|0;DP=72;QUALapprox=1871;RAW_GT_COUNT=0,0,1;RAW_MQandDP=250371,72;VarDP=47 GT:AD:DP:GQ:PL:SB 1:0,47,0:47:99:1871,0,1871:0,0,25,22 +chrX 2283932 . T . . END=2284195 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,245 +chrX 2284196 . A C, 117.04 . AS_QUALapprox=|127|0;AS_VarDP=27|41|0;BaseQRankSum=-0.161;DP=70;MQRankSum=0.000;QUALapprox=127;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;ReadPosRankSum=1.611;VarDP=68 GT:AD:DP:GQ:PL:SB 1:27,41,0:68:99:127,0,1308:18,9,14,27 +chrX 2284197 . T . . END=2284364 GT:DP:GQ:MIN_DP:PL 0:82:99:82:0,1800 +chrX 2284365 . C CAA, 3209.01 . AS_QUALapprox=|3219|0;AS_VarDP=0|72|0;DP=79;QUALapprox=3219;RAW_GT_COUNT=0,0,1;RAW_MQandDP=284400,79;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,72,0:72:99:3219,0,3220:0,0,41,31 +chrX 2284366 . A . . END=2284403 GT:DP:GQ:MIN_DP:PL 0:74:99:74:0,1800 +chrX 2284404 . TTGAA T, 2781.01 . AS_QUALapprox=|2791|0;AS_VarDP=0|62|0;DP=76;QUALapprox=2791;RAW_GT_COUNT=0,0,1;RAW_MQandDP=273600,76;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:2791,0,2791:0,0,32,30 +chrX 2284409 . T . . END=2286691 GT:DP:GQ:MIN_DP:PL 0:68:64:68:0,64 +chrX 2286692 . G GA, 1716.01 . AS_QUALapprox=|1726|0;AS_VarDP=0|67|0;DP=77;QUALapprox=1726;RAW_GT_COUNT=0,0,1;RAW_MQandDP=277200,77;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,67,0:67:99:1726,0,1727:0,0,34,33 +chrX 2286693 . A . . END=2288125 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1504 +chrX 2288126 . TA T, 1476.04 . AS_QUALapprox=|1555|0;AS_VarDP=0|52|0;DP=56;QUALapprox=1555;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:1555,0,1538:0,0,18,30 +chrX 2288128 . A . . END=2288433 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1639 +chrX 2288434 . A G, 2068.04 . AS_QUALapprox=|2078|0;AS_VarDP=0|63|0;DP=66;QUALapprox=2078;RAW_GT_COUNT=0,0,1;RAW_MQandDP=235227,66;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,63,0:63:99:2078,0,2078:0,0,38,25 +chrX 2288435 . A . . END=2290428 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,238 +chrX 2290429 . T C, 103.04 . AS_QUALapprox=|113|0;AS_VarDP=25|30|0;BaseQRankSum=-1.758;DP=58;MQRankSum=0.000;QUALapprox=113;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;ReadPosRankSum=-0.482;VarDP=55 GT:AD:DP:GQ:PL:SB 1:25,30,0:55:99:113,0,963:15,10,14,16 +chrX 2290430 . G . . END=2290588 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1800 +chrX 2290589 . A G, 457.04 . AS_QUALapprox=|467|0;AS_VarDP=27|40|0;BaseQRankSum=1.665;DP=70;MQRankSum=0.000;QUALapprox=467;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;ReadPosRankSum=-0.748;VarDP=67 GT:AD:DP:GQ:PL:SB 1:27,40,0:67:99:467,0,1345:12,15,20,20 +chrX 2290590 . A . . END=2291047 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,589 +chrX 2291048 . G A, 784.04 . AS_QUALapprox=|794|0;AS_VarDP=20|44|0;BaseQRankSum=-0.789;DP=64;MQRankSum=0.000;QUALapprox=794;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;ReadPosRankSum=-0.536;VarDP=64 GT:AD:DP:GQ:PL:SB 1:20,44,0:64:99:794,0,1479:6,14,23,21 +chrX 2291049 . G . . END=2291096 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1800 +chrX 2291097 . G A, 740.04 . AS_QUALapprox=|750|0;AS_VarDP=19|41|0;BaseQRankSum=-0.498;DP=60;MQRankSum=0.000;QUALapprox=750;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;ReadPosRankSum=0.970;VarDP=60 GT:AD:DP:GQ:PL:SB 1:19,41,0:60:99:750,0,1385:9,10,21,20 +chrX 2291098 . A . . END=2291286 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,665 +chrX 2291287 . T C, 165.04 . AS_QUALapprox=|175|0;AS_VarDP=34|38|0;BaseQRankSum=0.152;DP=75;MQRankSum=0.000;QUALapprox=175;RAW_GT_COUNT=0,0,1;RAW_MQandDP=270000,75;ReadPosRankSum=0.056;VarDP=72 GT:AD:DP:GQ:PL:SB 1:34,38,0:72:99:175,0,1241:15,19,19,19 +chrX 2291288 . A . . END=2291633 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,169 +chrX 2291634 . G . . END=2291634 GT:DP:GQ:MIN_DP:PL 0:65:0:65:0,0 +chrX 2291635 . T . . END=2291707 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1800 +chrX 2291708 . AC A, 15 . AS_QUALapprox=|25|0;AS_VarDP=32|32|0;BaseQRankSum=1.232;DP=66;MQRankSum=-0.969;QUALapprox=25;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237025,66;ReadPosRankSum=-0.958;VarDP=64 GT:AD:DP:GQ:PL:SB 1:32,32,0:64:25:25,0,1072:20,12,21,11 +chrX 2291710 . T *,G, 45.03 . AS_QUALapprox=|0|1051|0;AS_VarDP=0|26|32|0;DP=66;QUALapprox=1051;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237025,66;VarDP=58 GT:AD:DP:GQ:PL:SB 2:0,26,32,0:58:25:1051,25,0,1061:0,0,37,21 +chrX 2291711 . T . . END=2291895 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1296 +chrX 2291896 . A ATTT, 120.01 . AS_QUALapprox=|130|0;AS_VarDP=17|21|0;BaseQRankSum=1.090;DP=58;MQRankSum=-0.625;QUALapprox=130;RAW_GT_COUNT=0,0,1;RAW_MQandDP=191488,58;ReadPosRankSum=0.925;VarDP=38 GT:AD:DP:GQ:PL:SB 1:17,21,0:38:99:130,0,719:6,11,11,10 +chrX 2291897 . T . . END=2292381 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,167 +chrX 2292382 . G C, 2165.04 . AS_QUALapprox=|2175|0;AS_VarDP=0|64|0;DP=68;QUALapprox=2175;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,64,0:64:99:2175,0,2175:0,0,41,23 +chrX 2292383 . T . . END=2293184 GT:DP:GQ:MIN_DP:PL 0:70:45:68:0,45 +chrX 2293185 . A G, 2188.04 . AS_QUALapprox=|2198|0;AS_VarDP=0|68|0;DP=74;QUALapprox=2198;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,68,0:68:99:2198,0,2198:0,0,31,37 +chrX 2293186 . C . . END=2293252 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1746 +chrX 2293253 . GT G,GTT, 729.01 . AS_QUALapprox=|521|739|0;AS_VarDP=0|25|30|0;DP=62;QUALapprox=739;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=55 GT:AD:DP:GQ:PL:SB 2:0,25,30,0:55:99:739,218,0,1041:0,0,27,28 +chrX 2293255 . T . . END=2293269 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1800 +chrX 2293270 . C T, 202.04 . AS_QUALapprox=|212|0;AS_VarDP=26|34|0;BaseQRankSum=1.916;DP=65;MQRankSum=0.000;QUALapprox=212;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;ReadPosRankSum=-0.771;VarDP=60 GT:AD:DP:GQ:PL:SB 1:26,34,0:60:99:212,0,1368:10,16,20,14 +chrX 2293271 . C . . END=2293889 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1245 +chrX 2293890 . G A, 179.04 . AS_QUALapprox=|189|0;AS_VarDP=20|26|0;BaseQRankSum=-0.354;DP=48;MQRankSum=0.000;QUALapprox=189;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;ReadPosRankSum=-1.707;VarDP=46 GT:AD:DP:GQ:PL:SB 1:20,26,0:46:99:189,0,854:11,9,13,13 +chrX 2293891 . A . . END=2294057 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1596 +chrX 2294058 . C CAG, 2342.01 . AS_QUALapprox=|2352|0;AS_VarDP=0|62|0;DP=72;QUALapprox=2352;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:2352,0,2352:0,0,37,25 +chrX 2294059 . A . . END=2294663 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1263 +chrX 2294664 . C CA,CAA, 737.01 . AS_QUALapprox=|747|704|0;AS_VarDP=0|19|19|0;DP=55;QUALapprox=747;RAW_GT_COUNT=0,0,1;RAW_MQandDP=197425,55;VarDP=38 GT:AD:DP:GQ:PL:SB 1:0,19,19,0:38:43:747,0,43,622:0,0,17,21 +chrX 2294665 . A . . END=2294807 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1255 +chrX 2294808 . G GA, 205.01 . AS_QUALapprox=|215|0;AS_VarDP=22|29|0;BaseQRankSum=0.665;DP=57;MQRankSum=0.000;QUALapprox=215;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;ReadPosRankSum=-1.503;VarDP=51 GT:AD:DP:GQ:PL:SB 1:22,29,0:51:99:215,0,918:10,12,15,14 +chrX 2294809 . A . . END=2294884 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1494 +chrX 2294885 . T C, 1630.04 . AS_QUALapprox=|1640|0;AS_VarDP=0|52|0;DP=57;QUALapprox=1640;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:1640,0,1640:0,0,18,34 +chrX 2294886 . G . . END=2295040 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1534 +chrX 2295041 . G A, 1985.04 . AS_QUALapprox=|1995|0;AS_VarDP=0|62|0;DP=64;QUALapprox=1995;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:1995,0,1995:0,0,31,31 +chrX 2295042 . A . . END=2295244 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1613 +chrX 2295245 . TA T, 1603.01 . AS_QUALapprox=|1613|0;AS_VarDP=0|52|0;DP=55;QUALapprox=1613;RAW_GT_COUNT=0,0,1;RAW_MQandDP=146537,55;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:1613,0,1613:0,0,30,22 +chrX 2295247 . A . . END=2295422 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1633 +chrX 2295423 . T TG, 139.01 . AS_QUALapprox=|149|0;AS_VarDP=26|31|0;BaseQRankSum=-0.215;DP=65;MQRankSum=-2.061;QUALapprox=149;RAW_GT_COUNT=0,0,1;RAW_MQandDP=171200,65;ReadPosRankSum=-1.066;VarDP=57 GT:AD:DP:GQ:PL:SB 1:26,31,0:57:99:149,0,960:12,14,8,23 +chrX 2295424 . G . . END=2296614 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,119 +chrX 2296615 . T . . END=2296615 GT:DP:GQ:MIN_DP:PL 0:6:0:6:0,0 +chrX 2296616 . A . . END=2296634 GT:DP:GQ:MIN_DP:PL 0:4:45:4:0,45 +chrX 2296635 . A . . END=2296637 GT:DP:GQ:MIN_DP:PL 0:3:0:3:0,0 +chrX 2296638 . G . . END=2296792 GT:DP:GQ:MIN_DP:PL 0:2:20:1:0,20 +chrX 2296793 . A . . END=2296832 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 2296833 . A . . END=2297729 GT:DP:GQ:MIN_DP:PL 0:33:35:1:0,35 +chrX 2297730 . A C, 1412.04 . AS_QUALapprox=|1422|0;AS_VarDP=0|47|0;DP=50;QUALapprox=1422;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=47 GT:AD:DP:GQ:PL:SB 1:0,47,0:47:99:1422,0,1422:0,0,28,19 +chrX 2297731 . G . . END=2297761 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,1491 +chrX 2297762 . G GT,GTTTT, 745.01 . AS_QUALapprox=|700|755|0;AS_VarDP=0|20|22|0;DP=55;QUALapprox=755;RAW_GT_COUNT=0,0,1;RAW_MQandDP=196425,55;VarDP=42 GT:AD:DP:GQ:PL:SB 2:0,20,22,0:42:55:755,55,0,846:0,0,27,15 +chrX 2297763 . T . . END=2298067 GT:DP:GQ:MIN_DP:PL 0:74:99:74:0,249 +chrX 2298068 . A G, 383.04 . AS_QUALapprox=|393|0;AS_VarDP=35|45|0;BaseQRankSum=1.447;DP=82;MQRankSum=0.197;QUALapprox=393;RAW_GT_COUNT=0,0,1;RAW_MQandDP=294050,82;ReadPosRankSum=-1.116;VarDP=80 GT:AD:DP:GQ:PL:SB 1:35,45,0:80:99:393,0,1504:15,20,22,23 +chrX 2298069 . A . . END=2298183 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1800 +chrX 2298184 . T C, 2256.04 . AS_QUALapprox=|2266|0;AS_VarDP=0|71|0;DP=75;QUALapprox=2266;RAW_GT_COUNT=0,0,1;RAW_MQandDP=270000,75;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,71,0:71:99:2266,0,2266:0,0,26,45 +chrX 2298185 . G . . END=2298393 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,1002 +chrX 2298394 . T TA, 853.01 . AS_QUALapprox=|863|0;AS_VarDP=2|36|0;BaseQRankSum=-0.437;DP=44;MQRankSum=-0.118;QUALapprox=863;RAW_GT_COUNT=0,0,1;RAW_MQandDP=156400,44;ReadPosRankSum=-0.458;VarDP=38 GT:AD:DP:GQ:PL:SB 1:2,36,0:38:99:863,0,917:1,1,20,16 +chrX 2298395 . A . . END=2298455 GT:DP:GQ:MIN_DP:PL 0:44:99:44:0,1220 +chrX 2298456 . C T, 1851.04 . AS_QUALapprox=|1861|0;AS_VarDP=0|55|0;DP=57;QUALapprox=1861;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:1861,0,1861:0,0,35,20 +chrX 2298457 . A . . END=2298600 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,203 +chrX 2298601 . TACACACACACAC T,CACACACACACAC, 1348.04 . AS_QUALapprox=|1217|1358|0;AS_VarDP=0|27|34|0;DP=68;QUALapprox=1358;RAW_GT_COUNT=0,0,1;RAW_MQandDP=242800,68;VarDP=61 GT:AD:DP:GQ:PL:SB 2:0,27,34,0:61:99:1358,141,0,1418:0,0,28,33 +chrX 2298614 . A ACACACACACACG, 228.01 . AS_QUALapprox=|238|0;AS_VarDP=28|34|0;BaseQRankSum=-1.366;DP=63;MQRankSum=-0.875;QUALapprox=238;RAW_GT_COUNT=0,0,1;RAW_MQandDP=224800,63;ReadPosRankSum=-1.108;VarDP=62 GT:AD:DP:GQ:PL:SB 1:28,34,0:62:99:238,0,1478:11,17,18,16 +chrX 2298615 . C . . END=2298755 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,318 +chrX 2298756 . C T, 1805.04 . AS_QUALapprox=|1815|0;AS_VarDP=2|54|0;BaseQRankSum=2.648;DP=59;MQRankSum=-0.283;QUALapprox=1815;RAW_GT_COUNT=0,0,1;RAW_MQandDP=207954,59;ReadPosRankSum=0.530;VarDP=56 GT:AD:DP:GQ:PL:SB 1:2,54,0:56:99:1815,0,1905:1,1,30,24 +chrX 2298757 . G . . END=2299013 GT:DP:GQ:MIN_DP:PL 0:60:36:41:0,36 +chrX 2299014 . A T,AAT, 923.04 . AS_QUALapprox=|933|880|0;AS_VarDP=0|19|18|0;DP=49;QUALapprox=933;RAW_GT_COUNT=0,0,1;RAW_MQandDP=159179,49;VarDP=37 GT:AD:DP:GQ:PL:SB 1:0,19,18,0:37:53:933,0,53,890:0,0,20,17 +chrX 2299015 . T . . END=2299198 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1372 +chrX 2299199 . A C, 1668.04 . AS_QUALapprox=|1678|0;AS_VarDP=0|50|0;DP=51;QUALapprox=1678;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,50,0:50:99:1678,0,1678:0,0,20,30 +chrX 2299200 . T . . END=2299279 GT:DP:GQ:MIN_DP:PL 0:46:99:46:0,1370 +chrX 2299280 . T . . END=2299280 GT:DP:GQ:MIN_DP:PL 0:58:15:58:0,15 +chrX 2299281 . G . . END=2299348 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1716 +chrX 2299349 . A G, 1931.04 . AS_QUALapprox=|1941|0;AS_VarDP=0|63|0;DP=69;QUALapprox=1941;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,63,0:63:99:1941,0,1941:0,0,32,31 +chrX 2299350 . G . . END=2299853 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1250 +chrX 2299854 . CAA C,CAAA, 549.01 . AS_QUALapprox=|559|390|0;AS_VarDP=0|27|22|0;DP=59;QUALapprox=559;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=49 GT:AD:DP:GQ:PL:SB 1:0,27,22,0:49:99:559,0,169,859:0,0,23,26 +chrX 2299857 . A . . END=2302094 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,154 +chrX 2302095 . T C, 198.04 . AS_QUALapprox=|208|0;AS_VarDP=23|30|0;BaseQRankSum=-0.539;DP=54;MQRankSum=0.000;QUALapprox=208;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;ReadPosRankSum=0.386;VarDP=53 GT:AD:DP:GQ:PL:SB 1:23,30,0:53:99:208,0,988:11,12,11,19 +chrX 2302096 . A . . END=2302310 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1629 +chrX 2302311 . T TA, 134.01 . AS_QUALapprox=|144|0;AS_VarDP=24|28|0;BaseQRankSum=-2.522;DP=56;MQRankSum=0.000;QUALapprox=144;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;ReadPosRankSum=-1.671;VarDP=52 GT:AD:DP:GQ:PL:SB 1:24,28,0:52:99:144,0,1034:17,7,17,11 +chrX 2302312 . A . . END=2303523 GT:DP:GQ:MIN_DP:PL 0:56:66:56:0,66 +chrX 2303524 . G T, 104.04 . AS_QUALapprox=|114|0;AS_VarDP=31|34|0;BaseQRankSum=0.506;DP=70;MQRankSum=0.000;QUALapprox=114;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;ReadPosRankSum=0.795;VarDP=65 GT:AD:DP:GQ:PL:SB 1:31,34,0:65:99:114,0,1131:18,13,19,15 +chrX 2303525 . C . . END=2303618 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1800 +chrX 2303619 . A G, 151.04 . AS_QUALapprox=|161|0;AS_VarDP=27|31|0;BaseQRankSum=0.901;DP=66;MQRankSum=0.000;QUALapprox=161;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;ReadPosRankSum=-0.062;VarDP=58 GT:AD:DP:GQ:PL:SB 1:27,31,0:58:99:161,0,992:16,11,14,17 +chrX 2303620 . T . . END=2303788 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,630 +chrX 2303789 . ATGGG A, 719.01 . AS_QUALapprox=|729|0;AS_VarDP=0|18|0;DP=31;QUALapprox=729;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93239,31;VarDP=18 GT:AD:DP:GQ:PL:SB 1:0,18,0:18:99:729,0,729:0,0,8,10 +chrX 2303794 . T . . END=2303800 GT:DP:GQ:MIN_DP:PL 0:19:99:19:0,526 +chrX 2303801 . G A, 684.04 . AS_QUALapprox=|694|0;AS_VarDP=1|18|0;BaseQRankSum=-0.560;DP=28;MQRankSum=-0.287;QUALapprox=694;RAW_GT_COUNT=0,0,1;RAW_MQandDP=80439,28;ReadPosRankSum=1.643;VarDP=19 GT:AD:DP:GQ:PL:SB 1:1,18,0:19:99:694,0,728:1,0,8,10 +chrX 2303802 . T . . END=2303844 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,471 +chrX 2303845 . ATGGATGGG A, 510.01 . AS_QUALapprox=|520|0;AS_VarDP=6|23|0;BaseQRankSum=0.709;DP=43;MQRankSum=2.080;QUALapprox=520;RAW_GT_COUNT=0,0,1;RAW_MQandDP=131938,43;ReadPosRankSum=-1.347;VarDP=29 GT:AD:DP:GQ:PL:SB 1:6,23,0:29:99:520,0,663:4,2,9,14 +chrX 2303854 . T . . END=2304116 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,302 +chrX 2304117 . A . . END=2304124 GT:DP:GQ:MIN_DP:PL 0:28:0:28:0,0 +chrX 2304125 . A . . END=2304170 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,405 +chrX 2304171 . T G, 250.04 . AS_QUALapprox=|260|0;AS_VarDP=10|17|0;BaseQRankSum=-1.492;DP=28;MQRankSum=-1.239;QUALapprox=260;RAW_GT_COUNT=0,0,1;RAW_MQandDP=89069,28;ReadPosRankSum=-1.557;VarDP=27 GT:AD:DP:GQ:PL:SB 1:10,17,0:27:99:260,0,669:8,2,11,6 +chrX 2304172 . G . . END=2304203 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,586 +chrX 2304204 . AATGG A, 342.01 . AS_QUALapprox=|352|0;AS_VarDP=0|8|0;DP=13;QUALapprox=352;RAW_GT_COUNT=0,0,1;RAW_MQandDP=42525,13;VarDP=8 GT:AD:DP:GQ:PL:SB 1:0,8,0:8:99:352,0,352:0,0,7,1 +chrX 2304209 . A . . END=2304292 GT:DP:GQ:MIN_DP:PL 0:15:99:15:0,325 +chrX 2304293 . G A, 139.04 . AS_QUALapprox=|149|0;AS_VarDP=9|15|0;BaseQRankSum=-1.863;DP=31;MQRankSum=-0.367;QUALapprox=149;RAW_GT_COUNT=0,0,1;RAW_MQandDP=84477,31;ReadPosRankSum=0.656;VarDP=24 GT:AD:DP:GQ:PL:SB 1:9,15,0:24:99:149,0,462:8,1,8,7 +chrX 2304294 . T . . END=2304338 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,749 +chrX 2304339 . T TGATGGATG, 270.01 . AS_QUALapprox=|280|0;AS_VarDP=12|18|0;BaseQRankSum=0.482;DP=35;MQRankSum=-1.423;QUALapprox=280;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115605,35;ReadPosRankSum=-0.551;VarDP=30 GT:AD:DP:GQ:PL:SB 1:12,18,0:30:99:280,0,810:8,4,9,9 +chrX 2304340 . G . . END=2306018 GT:DP:GQ:MIN_DP:PL 0:61:60:32:0,60 +chrX 2306019 . CT C, 2045.01 . AS_QUALapprox=|2055|0;AS_VarDP=0|58|0;DP=61;QUALapprox=2055;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,58,0:58:99:2055,0,2055:0,0,31,27 +chrX 2306021 . T . . END=2306293 GT:DP:GQ:MIN_DP:PL 0:81:99:81:0,1800 +chrX 2306294 . C T, 25.04 . AS_QUALapprox=|35|0;AS_VarDP=34|34|0;BaseQRankSum=0.633;DP=69;MQRankSum=0.000;QUALapprox=35;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;ReadPosRankSum=-0.798;VarDP=68 GT:AD:DP:GQ:PL:SB 1:34,34,0:68:35:35,0,1112:19,15,17,17 +chrX 2306295 . T . . END=2306698 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,134 +chrX 2306699 . G A, 278.04 . AS_QUALapprox=|288|0;AS_VarDP=31|39|0;BaseQRankSum=0.734;DP=73;MQRankSum=0.000;QUALapprox=288;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;ReadPosRankSum=0.532;VarDP=70 GT:AD:DP:GQ:PL:SB 1:31,39,0:70:99:288,0,1316:17,14,21,18 +chrX 2306700 . T . . END=2306744 GT:DP:GQ:MIN_DP:PL 0:74:99:74:0,1800 +chrX 2306745 . T A, 283.04 . AS_QUALapprox=|293|0;AS_VarDP=33|42|0;BaseQRankSum=0.079;DP=80;MQRankSum=0.000;QUALapprox=293;RAW_GT_COUNT=0,0,1;RAW_MQandDP=288000,80;ReadPosRankSum=1.607;VarDP=75 GT:AD:DP:GQ:PL:SB 1:33,42,0:75:99:293,0,1329:20,13,24,18 +chrX 2306746 . A . . END=2306925 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1547 +chrX 2306926 . CTT C, 199.01 . AS_QUALapprox=|209|0;AS_VarDP=17|21|0;BaseQRankSum=-1.184;DP=47;MQRankSum=0.000;QUALapprox=209;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;ReadPosRankSum=1.252;VarDP=38 GT:AD:DP:GQ:PL:SB 1:17,21,0:38:99:209,0,752:4,13,13,8 +chrX 2306929 . T . . END=2307099 GT:DP:GQ:MIN_DP:PL 0:55:59:48:0,59 +chrX 2307100 . C G, 78.04 . AS_QUALapprox=|88|0;AS_VarDP=26|29|0;BaseQRankSum=0.144;DP=55;MQRankSum=0.000;QUALapprox=88;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;ReadPosRankSum=0.101;VarDP=55 GT:AD:DP:GQ:PL:SB 1:26,29,0:55:88:88,0,904:8,18,9,20 +chrX 2307101 . T . . END=2307146 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,1473 +chrX 2307147 . T G, 19.04 . AS_QUALapprox=|29|0;AS_VarDP=21|24|0;BaseQRankSum=-1.631;DP=48;MQRankSum=0.000;QUALapprox=29;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;ReadPosRankSum=-0.034;VarDP=45 GT:AD:DP:GQ:PL:SB 1:21,24,0:45:29:29,0,758:10,11,13,11 +chrX 2307148 . C . . END=2307539 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1369 +chrX 2307540 . G C, 171.04 . AS_QUALapprox=|181|0;AS_VarDP=24|32|0;BaseQRankSum=-2.575;DP=59;MQRankSum=-0.830;QUALapprox=181;RAW_GT_COUNT=0,0,1;RAW_MQandDP=209048,59;ReadPosRankSum=-0.207;VarDP=56 GT:AD:DP:GQ:PL:SB 1:24,32,0:56:99:181,0,987:14,10,18,14 +chrX 2307541 . A . . END=2307763 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,1285 +chrX 2307764 . CA C, 644.01 . AS_QUALapprox=|654|0;AS_VarDP=1|26|0;DP=48;MQRankSum=0.000;QUALapprox=654;RAW_GT_COUNT=0,0,1;RAW_MQandDP=168785,48;VarDP=27 GT:AD:DP:GQ:PL:SB 1:1,26,0:27:99:654,0,676:0,1,11,15 +chrX 2307766 . A . . END=2308135 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,139 +chrX 2308136 . A G, 1707.04 . AS_QUALapprox=|1717|0;AS_VarDP=0|53|0;DP=58;QUALapprox=1717;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=53 GT:AD:DP:GQ:PL:SB 1:0,53,0:53:99:1717,0,1717:0,0,30,23 +chrX 2308137 . A . . END=2308420 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,403 +chrX 2308421 . C G, 579.04 . AS_QUALapprox=|589|0;AS_VarDP=23|42|0;BaseQRankSum=-0.686;DP=66;MQRankSum=0.000;QUALapprox=589;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;ReadPosRankSum=1.558;VarDP=65 GT:AD:DP:GQ:PL:SB 1:23,42,0:65:99:589,0,1369:11,12,26,16 +chrX 2308422 . A . . END=2308504 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1800 +chrX 2308505 . G C, 2128.04 . AS_QUALapprox=|2138|0;AS_VarDP=0|68|0;DP=70;QUALapprox=2138;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,68,0:68:99:2138,0,2138:0,0,37,31 +chrX 2308506 . A . . END=2309001 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,397 +chrX 2309002 . T G, 1896.04 . AS_QUALapprox=|1906|0;AS_VarDP=0|62|0;DP=65;QUALapprox=1906;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:1906,0,1906:0,0,33,29 +chrX 2309003 . T . . END=2310091 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1409 +chrX 2310092 . T C, 1834.04 . AS_QUALapprox=|1844|0;AS_VarDP=0|54|0;DP=56;QUALapprox=1844;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=54 GT:AD:DP:GQ:PL:SB 1:0,54,0:54:99:1844,0,1844:0,0,31,23 +chrX 2310093 . T . . END=2310527 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1402 +chrX 2310528 . C CTG, 281.01 . AS_QUALapprox=|291|0;AS_VarDP=18|26|0;BaseQRankSum=2.001;DP=53;MQRankSum=0.000;QUALapprox=291;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;ReadPosRankSum=0.119;VarDP=44 GT:AD:DP:GQ:PL:SB 1:18,26,0:44:99:291,0,981:7,11,13,13 +chrX 2310529 . T . . END=2311060 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,273 +chrX 2311061 . CAA C,CA, 667.01 . AS_QUALapprox=|370|677|0;AS_VarDP=0|11|22|0;DP=43;QUALapprox=677;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154225,43;VarDP=33 GT:AD:DP:GQ:PL:SB 2:0,11,22,0:33:99:677,307,0,637:0,0,17,16 +chrX 2311064 . A . . END=2311749 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1358 +chrX 2311750 . G . . END=2311750 GT:DP:GQ:MIN_DP:PL 0:62:5:62:0,5 +chrX 2311751 . T . . END=2311902 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1668 +chrX 2311903 . A G, 2000.04 . AS_QUALapprox=|2010|0;AS_VarDP=0|61|0;DP=62;QUALapprox=2010;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,61,0:61:99:2010,0,2010:0,0,27,34 +chrX 2311904 . G . . END=2312127 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1646 +chrX 2312128 . T G, 1926.04 . AS_QUALapprox=|1936|0;AS_VarDP=0|60|0;DP=61;QUALapprox=1936;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:1936,0,1936:0,0,26,34 +chrX 2312129 . G . . END=2312859 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1334 +chrX 2312860 . C A, 36.04 . AS_QUALapprox=|46|0;AS_VarDP=27|29|0;BaseQRankSum=-0.636;DP=59;MQRankSum=0.000;QUALapprox=46;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;ReadPosRankSum=0.361;VarDP=56 GT:AD:DP:GQ:PL:SB 1:27,29,0:56:46:46,0,955:13,14,16,13 +chrX 2312861 . A . . END=2313514 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,120 +chrX 2313515 . A C, 1630.04 . AS_QUALapprox=|1640|0;AS_VarDP=0|52|0;DP=55;QUALapprox=1640;RAW_GT_COUNT=0,0,1;RAW_MQandDP=195652,55;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:1640,0,1640:0,0,31,21 +chrX 2313516 . G . . END=2313618 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1632 +chrX 2313619 . G A, 333.04 . AS_QUALapprox=|343|0;AS_VarDP=31|41|0;BaseQRankSum=0.142;DP=72;MQRankSum=-0.052;QUALapprox=343;RAW_GT_COUNT=0,0,1;RAW_MQandDP=254970,72;ReadPosRankSum=-0.404;VarDP=72 GT:AD:DP:GQ:PL:SB 1:31,41,0:72:99:343,0,1335:14,17,21,20 +chrX 2313620 . G . . END=2313705 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,298 +chrX 2313706 . A G, 49.04 . AS_QUALapprox=|59|0;AS_VarDP=34|35|0;BaseQRankSum=1.437;DP=69;MQRankSum=0.000;QUALapprox=59;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;ReadPosRankSum=-0.006;VarDP=69 GT:AD:DP:GQ:PL:SB 1:34,35,0:69:59:59,0,1165:14,20,19,16 +chrX 2313707 . A . . END=2313952 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,204 +chrX 2313953 . C T, 2346.04 . AS_QUALapprox=|2356|0;AS_VarDP=0|74|0;DP=80;QUALapprox=2356;RAW_GT_COUNT=0,0,1;RAW_MQandDP=287316,80;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,74,0:74:99:2356,0,2356:0,0,34,40 +chrX 2313954 . T . . END=2314123 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1370 +chrX 2314124 . C T, 1147.04 . AS_QUALapprox=|1157|0;AS_VarDP=0|35|0;DP=58;QUALapprox=1157;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,35,0:35:99:1157,0,1157:0,0,10,25 +chrX 2314125 . A . . END=2314205 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,450 +chrX 2314206 . GAGGGAGGGAAGGAGGGAAGGAAGGGAGGGAGGGAAGGA G, 51.01 . AS_QUALapprox=|61|0;AS_VarDP=2|2|0;DP=39;QUALapprox=61;RAW_GT_COUNT=0,0,1;RAW_MQandDP=128292,39;VarDP=4 GT:AD:DP:GQ:PL:SB 1:2,2,0:4:61:61,0,175:0,0,0,2 +chrX 2314245 . A . . END=2314315 GT:DP:GQ:MIN_DP:PL 0:21:49:21:0,49 +chrX 2314316 . C . . END=2314316 GT:DP:GQ:MIN_DP:PL 0:20:0:20:0,0 +chrX 2314317 . A . . END=2314341 GT:DP:GQ:MIN_DP:PL 0:15:99:15:0,174 +chrX 2314342 . A . . END=2314342 GT:DP:GQ:MIN_DP:PL 0:13:0:13:0,0 +chrX 2314343 . A . . END=2314344 GT:DP:GQ:MIN_DP:PL 0:15:89:15:0,89 +chrX 2314345 . G . . END=2314345 GT:DP:GQ:MIN_DP:PL 0:14:0:14:0,0 +chrX 2314346 . A . . END=2314351 GT:DP:GQ:MIN_DP:PL 0:17:99:17:0,391 +chrX 2314352 . G . . END=2314352 GT:DP:GQ:MIN_DP:PL 0:19:0:19:0,0 +chrX 2314353 . G . . END=2314368 GT:DP:GQ:MIN_DP:PL 0:22:99:22:0,199 +chrX 2314369 . A . . END=2314369 GT:DP:GQ:MIN_DP:PL 0:23:0:23:0,0 +chrX 2314370 . G . . END=2314374 GT:DP:GQ:MIN_DP:PL 0:26:70:26:0,70 +chrX 2314375 . A . . END=2314375 GT:DP:GQ:MIN_DP:PL 0:28:0:28:0,0 +chrX 2314376 . A . . END=2314401 GT:DP:GQ:MIN_DP:PL 0:38:99:38:0,238 +chrX 2314402 . A . . END=2314403 GT:DP:GQ:MIN_DP:PL 0:60:0:60:0,0 +chrX 2314404 . A . . END=2314482 GT:DP:GQ:MIN_DP:PL 0:92:99:92:0,562 +chrX 2314483 . A . . END=2314483 GT:DP:GQ:MIN_DP:PL 0:62:0:62:0,0 +chrX 2314484 . A . . END=2314990 GT:DP:GQ:MIN_DP:PL 0:65:94:65:0,94 +chrX 2314991 . T C, 45.04 . AS_QUALapprox=|55|0;AS_VarDP=34|33|0;BaseQRankSum=2.353;DP=71;MQRankSum=-0.985;QUALapprox=55;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255025,71;ReadPosRankSum=-1.148;VarDP=67 GT:AD:DP:GQ:PL:SB 1:34,33,0:67:55:55,0,1097:19,15,20,13 +chrX 2314992 . C . . END=2315175 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,381 +chrX 2315176 . C G, 2455.04 . AS_QUALapprox=|2465|0;AS_VarDP=0|64|0;DP=68;QUALapprox=2465;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,64,0:64:99:2465,0,2465:0,0,31,33 +chrX 2315177 . G . . END=2315300 GT:DP:GQ:MIN_DP:PL 0:85:99:85:0,174 +chrX 2315301 . A G, 90.04 . AS_QUALapprox=|100|0;AS_VarDP=38|41|0;BaseQRankSum=0.390;DP=80;MQRankSum=0.000;QUALapprox=100;RAW_GT_COUNT=0,0,1;RAW_MQandDP=288000,80;ReadPosRankSum=-0.231;VarDP=79 GT:AD:DP:GQ:PL:SB 1:38,41,0:79:99:100,0,1320:21,17,26,15 +chrX 2315302 . C . . END=2315561 GT:DP:GQ:MIN_DP:PL 0:78:80:78:0,80 +chrX 2315562 . G C, 1876.04 . AS_QUALapprox=|1886|0;AS_VarDP=0|58|0;DP=59;QUALapprox=1886;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,58,0:58:99:1886,0,1886:0,0,24,34 +chrX 2315563 . T . . END=2315651 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1653 +chrX 2315652 . T C, 1746.04 . AS_QUALapprox=|1756|0;AS_VarDP=0|53|0;DP=54;QUALapprox=1756;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=53 GT:AD:DP:GQ:PL:SB 1:0,53,0:53:99:1756,0,1756:0,0,20,33 +chrX 2315653 . T . . END=2317255 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,283 +chrX 2317256 . C CTTTT,CTTTTTTTTTTT, 1323.01 . AS_QUALapprox=|1333|1090|0;AS_VarDP=0|16|10|0;DP=54;QUALapprox=1333;RAW_GT_COUNT=0,0,1;RAW_MQandDP=184625,54;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,16,10,0:26:99:1333,0,243,1006:0,0,12,14 +chrX 2317257 . T . . END=2317330 GT:DP:GQ:MIN_DP:PL 0:42:99:42:0,218 +chrX 2317331 . A C, 2143.04 . AS_QUALapprox=|2153|0;AS_VarDP=0|49|0;DP=49;QUALapprox=2153;RAW_GT_COUNT=0,0,1;RAW_MQandDP=174400,49;VarDP=49 GT:AD:DP:GQ:PL:SB 1:0,49,0:49:99:2153,0,2153:0,0,22,27 +chrX 2317332 . G . . END=2317337 GT:DP:GQ:MIN_DP:PL 0:47:99:47:0,234 +chrX 2317338 . A G, 2108.04 . AS_QUALapprox=|2118|0;AS_VarDP=0|48|0;DP=48;QUALapprox=2118;RAW_GT_COUNT=0,0,1;RAW_MQandDP=170800,48;VarDP=48 GT:AD:DP:GQ:PL:SB 1:0,48,0:48:99:2118,0,2118:0,0,22,26 +chrX 2317339 . C . . END=2317508 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1664 +chrX 2317509 . C A, 234.04 . AS_QUALapprox=|244|0;AS_VarDP=26|32|0;BaseQRankSum=-1.587;DP=62;MQRankSum=1.976;QUALapprox=244;RAW_GT_COUNT=0,0,1;RAW_MQandDP=214581,62;ReadPosRankSum=1.525;VarDP=58 GT:AD:DP:GQ:PL:SB 1:26,32,0:58:99:244,0,1352:13,13,17,15 +chrX 2317510 . C . . END=2317531 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1737 +chrX 2317532 . G A, 502.04 . AS_QUALapprox=|512|0;AS_VarDP=21|35|0;BaseQRankSum=-0.775;DP=58;MQRankSum=2.299;QUALapprox=512;RAW_GT_COUNT=0,0,1;RAW_MQandDP=202181,58;ReadPosRankSum=-0.395;VarDP=56 GT:AD:DP:GQ:PL:SB 1:21,35,0:56:99:512,0,1446:12,9,17,18 +chrX 2317533 . T . . END=2318191 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,154 +chrX 2318192 . GAA G,GAAA, 161.01 . AS_QUALapprox=|171|94|0;AS_VarDP=0|14|11|0;DP=40;QUALapprox=171;RAW_GT_COUNT=0,0,1;RAW_MQandDP=144000,40;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,14,11,0:25:77:171,0,77,377:0,0,13,12 +chrX 2318195 . A . . END=2318541 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1232 +chrX 2318542 . C A, 139.04 . AS_QUALapprox=|149|0;AS_VarDP=29|32|0;BaseQRankSum=1.223;DP=62;MQRankSum=0.000;QUALapprox=149;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;ReadPosRankSum=0.823;VarDP=61 GT:AD:DP:GQ:PL:SB 1:29,32,0:61:99:149,0,1072:11,18,15,17 +chrX 2318543 . G . . END=2319541 GT:DP:GQ:MIN_DP:PL 0:56:70:56:0,70 +chrX 2319542 . C A,CA, 718.01 . AS_QUALapprox=|120|728|0;AS_VarDP=0|8|22|0;DP=50;QUALapprox=728;RAW_GT_COUNT=0,0,1;RAW_MQandDP=174000,50;VarDP=30 GT:AD:DP:GQ:PL:SB 2:0,8,22,0:30:99:728,608,0,758:0,0,13,17 +chrX 2319543 . A . . END=2320410 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1215 +chrX 2320411 . A C, 1389.04 . AS_QUALapprox=|1399|0;AS_VarDP=0|42|0;DP=56;QUALapprox=1399;RAW_GT_COUNT=0,0,1;RAW_MQandDP=196729,56;VarDP=42 GT:AD:DP:GQ:PL:SB 1:0,42,0:42:99:1399,0,1399:0,0,9,33 +chrX 2320412 . A . . END=2320515 GT:DP:GQ:MIN_DP:PL 0:37:99:37:0,675 +chrX 2320516 . C A, 859.04 . AS_QUALapprox=|869|0;AS_VarDP=0|20|0;DP=37;QUALapprox=869;RAW_GT_COUNT=0,0,1;RAW_MQandDP=112999,37;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:869,0,869:0,0,3,17 +chrX 2320517 . A . . END=2320521 GT:DP:GQ:MIN_DP:PL 0:20:99:20:0,626 +chrX 2320522 . C T, 835.04 . AS_QUALapprox=|845|0;AS_VarDP=0|19|0;DP=36;QUALapprox=845;RAW_GT_COUNT=0,0,1;RAW_MQandDP=109399,36;VarDP=19 GT:AD:DP:GQ:PL:SB 1:0,19,0:19:99:845,0,845:0,0,2,17 +chrX 2320523 . T . . END=2320530 GT:DP:GQ:MIN_DP:PL 0:18:99:18:0,540 +chrX 2320531 . A G, 665.04 . AS_QUALapprox=|675|0;AS_VarDP=3|18|0;BaseQRankSum=0.000;DP=38;MQRankSum=-0.947;QUALapprox=675;RAW_GT_COUNT=0,0,1;RAW_MQandDP=116599,38;ReadPosRankSum=1.737;VarDP=21 GT:AD:DP:GQ:PL:SB 1:3,18,0:21:99:675,0,810:1,2,2,16 +chrX 2320532 . G . . END=2320532 GT:DP:GQ:MIN_DP:PL 0:19:99:19:0,585 +chrX 2320533 . T C, 620.04 . AS_QUALapprox=|630|0;AS_VarDP=3|17|0;BaseQRankSum=3.147;DP=27;MQRankSum=-0.839;QUALapprox=630;RAW_GT_COUNT=0,0,1;RAW_MQandDP=81822,27;ReadPosRankSum=2.634;VarDP=20 GT:AD:DP:GQ:PL:SB 1:3,17,0:20:99:630,0,765:1,2,1,16 +chrX 2320534 . G . . END=2320540 GT:DP:GQ:MIN_DP:PL 0:18:99:18:0,561 +chrX 2320541 . C T, 440.04 . AS_QUALapprox=|450|0;AS_VarDP=4|14|0;BaseQRankSum=3.424;DP=25;MQRankSum=-1.104;QUALapprox=450;RAW_GT_COUNT=0,0,1;RAW_MQandDP=74622,25;ReadPosRankSum=2.552;VarDP=18 GT:AD:DP:GQ:PL:SB 1:4,14,0:18:99:450,0,630:2,2,1,13 +chrX 2320542 . C G, 440.04 . AS_QUALapprox=|450|0;AS_VarDP=4|14|0;BaseQRankSum=2.663;DP=25;MQRankSum=-1.104;QUALapprox=450;RAW_GT_COUNT=0,0,1;RAW_MQandDP=74622,25;ReadPosRankSum=2.735;VarDP=18 GT:AD:DP:GQ:PL:SB 1:4,14,0:18:99:450,0,630:2,2,1,13 +chrX 2320543 . A G, 395.04 . AS_QUALapprox=|405|0;AS_VarDP=4|13|0;BaseQRankSum=3.312;DP=24;MQRankSum=-1.154;QUALapprox=405;RAW_GT_COUNT=0,0,1;RAW_MQandDP=71022,24;ReadPosRankSum=2.613;VarDP=17 GT:AD:DP:GQ:PL:SB 1:4,13,0:17:99:405,0,585:2,2,1,12 +chrX 2320544 . C . . END=2320544 GT:DP:GQ:MIN_DP:PL 0:16:99:16:0,526 +chrX 2320545 . C T, 350.04 . AS_QUALapprox=|360|0;AS_VarDP=4|12|0;BaseQRankSum=3.312;DP=23;MQRankSum=-1.210;QUALapprox=360;RAW_GT_COUNT=0,0,1;RAW_MQandDP=67422,23;ReadPosRankSum=2.613;VarDP=16 GT:AD:DP:GQ:PL:SB 1:4,12,0:16:99:360,0,540:2,2,1,11 +chrX 2320546 . T . . END=2320550 GT:DP:GQ:MIN_DP:PL 0:17:99:17:0,481 +chrX 2320551 . T C, 305.04 . AS_QUALapprox=|315|0;AS_VarDP=5|12|0;BaseQRankSum=2.948;DP=26;MQRankSum=-1.361;QUALapprox=315;RAW_GT_COUNT=0,0,1;RAW_MQandDP=78222,26;ReadPosRankSum=1.954;VarDP=17 GT:AD:DP:GQ:PL:SB 1:5,12,0:17:99:315,0,540:3,2,1,11 +chrX 2320552 . T . . END=2320557 GT:DP:GQ:MIN_DP:PL 0:17:99:17:0,526 +chrX 2320558 . A T, 215.04 . AS_QUALapprox=|225|0;AS_VarDP=6|11|0;BaseQRankSum=1.696;DP=28;MQRankSum=-1.570;QUALapprox=225;RAW_GT_COUNT=0,0,1;RAW_MQandDP=85422,28;ReadPosRankSum=1.311;VarDP=17 GT:AD:DP:GQ:PL:SB 1:6,11,0:17:99:225,0,495:4,2,1,10 +chrX 2320559 . G . . END=2320560 GT:DP:GQ:MIN_DP:PL 0:17:99:17:0,561 +chrX 2320561 . G A, 215.04 . AS_QUALapprox=|225|0;AS_VarDP=6|11|0;BaseQRankSum=2.583;DP=28;MQRankSum=-1.570;QUALapprox=225;RAW_GT_COUNT=0,0,1;RAW_MQandDP=85422,28;ReadPosRankSum=0.352;VarDP=17 GT:AD:DP:GQ:PL:SB 1:6,11,0:17:99:225,0,495:4,2,1,10 +chrX 2320562 . C . . END=2320569 GT:DP:GQ:MIN_DP:PL 0:17:99:17:0,481 +chrX 2320570 . G A, 633.04 . AS_QUALapprox=|643|0;AS_VarDP=0|17|0;DP=28;QUALapprox=643;RAW_GT_COUNT=0,0,1;RAW_MQandDP=85422,28;VarDP=17 GT:AD:DP:GQ:PL:SB 1:0,17,0:17:99:643,0,643:0,0,6,11 +chrX 2320571 . C . . END=2320575 GT:DP:GQ:MIN_DP:PL 0:18:99:18:0,541 +chrX 2320576 . A . . END=2320576 GT:DP:GQ:MIN_DP:PL 0:18:9:18:0,9 +chrX 2320577 . T . . END=2321506 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,188 +chrX 2321507 . T TG, 144.01 . AS_QUALapprox=|154|0;AS_VarDP=26|31|0;BaseQRankSum=1.029;DP=58;MQRankSum=0.000;QUALapprox=154;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;ReadPosRankSum=-1.178;VarDP=57 GT:AD:DP:GQ:PL:SB 1:26,31,0:57:99:154,0,1044:12,14,16,15 +chrX 2321508 . G . . END=2321609 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1574 +chrX 2321610 . T C, 1806.04 . AS_QUALapprox=|1816|0;AS_VarDP=0|57|0;DP=61;QUALapprox=1816;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:1816,0,1816:0,0,25,32 +chrX 2321611 . G . . END=2321781 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1587 +chrX 2321782 . G A, 410.04 . AS_QUALapprox=|420|0;AS_VarDP=19|29|0;BaseQRankSum=2.305;DP=48;MQRankSum=0.000;QUALapprox=420;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;ReadPosRankSum=1.023;VarDP=48 GT:AD:DP:GQ:PL:SB 1:19,29,0:48:99:420,0,968:7,12,16,13 +chrX 2321783 . G . . END=2321834 GT:DP:GQ:MIN_DP:PL 0:44:99:44:0,1210 +chrX 2321835 . G C, 1270.04 . AS_QUALapprox=|1280|0;AS_VarDP=0|40|0;DP=44;QUALapprox=1280;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158400,44;VarDP=40 GT:AD:DP:GQ:PL:SB 1:0,40,0:40:99:1280,0,1280:0,0,18,22 +chrX 2321836 . T . . END=2322672 GT:DP:GQ:MIN_DP:PL 0:51:26:46:0,26 +chrX 2322673 . C T, 81.04 . AS_QUALapprox=|91|0;AS_VarDP=33|33|0;BaseQRankSum=2.436;DP=69;MQRankSum=-0.533;QUALapprox=91;RAW_GT_COUNT=0,0,1;RAW_MQandDP=246354,69;ReadPosRankSum=1.161;VarDP=66 GT:AD:DP:GQ:PL:SB 1:33,33,0:66:91:91,0,1097:19,14,22,11 +chrX 2322674 . G . . END=2322680 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1800 +chrX 2322681 . T TA, 2498.01 . AS_QUALapprox=|2508|0;AS_VarDP=0|70|0;DP=72;QUALapprox=2508;RAW_GT_COUNT=0,0,1;RAW_MQandDP=257154,72;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,70,0:70:99:2508,0,2508:0,0,44,26 +chrX 2322682 . A . . END=2322875 GT:DP:GQ:MIN_DP:PL 0:74:99:74:0,1800 +chrX 2322876 . A G, 1830.04 . AS_QUALapprox=|1840|0;AS_VarDP=1|57|0;BaseQRankSum=2.452;DP=67;MQRankSum=0.000;QUALapprox=1840;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;ReadPosRankSum=-1.643;VarDP=58 GT:AD:DP:GQ:PL:SB 1:1,57,0:58:99:1840,0,1849:1,0,29,28 +chrX 2322877 . C . . END=2323066 GT:DP:GQ:MIN_DP:PL 0:62:95:62:0,95 +chrX 2323067 . G GCGCCAGC, 3033.01 . AS_QUALapprox=|3043|0;AS_VarDP=0|68|0;DP=74;QUALapprox=3043;RAW_GT_COUNT=0,0,1;RAW_MQandDP=264400,74;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,68,0:68:99:3043,0,3044:0,0,26,42 +chrX 2323068 . C . . END=2323220 GT:DP:GQ:MIN_DP:PL 0:78:99:78:0,1800 +chrX 2323221 . T C, 366.04 . AS_QUALapprox=|376|0;AS_VarDP=29|43|0;BaseQRankSum=-2.367;DP=74;MQRankSum=0.000;QUALapprox=376;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;ReadPosRankSum=-1.281;VarDP=72 GT:AD:DP:GQ:PL:SB 1:29,43,0:72:99:376,0,1364:17,12,18,25 +chrX 2323222 . A . . END=2324056 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1400 +chrX 2324057 . GAAA G,GA, 863.01 . AS_QUALapprox=|761|873|0;AS_VarDP=0|15|17|0;DP=51;QUALapprox=873;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180869,51;VarDP=32 GT:AD:DP:GQ:PL:SB 2:0,15,17,0:32:99:873,112,0,688:0,0,11,21 +chrX 2324061 . A . . END=2324488 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1588 +chrX 2324489 . C T, 14.03 . AS_QUALapprox=|24|0;AS_VarDP=40|41|0;BaseQRankSum=-0.271;DP=86;MQRankSum=0.000;QUALapprox=24;RAW_GT_COUNT=0,0,1;RAW_MQandDP=309600,86;ReadPosRankSum=-1.025;VarDP=81 GT:AD:DP:GQ:PL:SB 1:40,41,0:81:24:24,0,1364:23,17,23,18 +chrX 2324490 . G . . END=2324908 GT:DP:GQ:MIN_DP:PL 0:58:23:49:0,23 +chrX 2324909 . T C, 1543.04 . AS_QUALapprox=|1553|0;AS_VarDP=0|47|0;DP=49;QUALapprox=1553;RAW_GT_COUNT=0,0,1;RAW_MQandDP=175825,49;VarDP=47 GT:AD:DP:GQ:PL:SB 1:0,47,0:47:99:1553,0,1553:0,0,23,24 +chrX 2324910 . A . . END=2324945 GT:DP:GQ:MIN_DP:PL 0:44:99:44:0,1266 +chrX 2324946 . GTT G,GTTT, 567.01 . AS_QUALapprox=|577|184|0;AS_VarDP=0|24|14|0;DP=46;QUALapprox=577;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165025,46;VarDP=38 GT:AD:DP:GQ:PL:SB 1:0,24,14,0:38:99:577,0,393,798:0,0,18,20 +chrX 2324949 . T . . END=2325850 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1031 +chrX 2325851 . T TTTCTC, 2430.01 . AS_QUALapprox=|2440|0;AS_VarDP=0|55|0;DP=61;QUALapprox=2440;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:2440,0,2441:0,0,34,21 +chrX 2325852 . T . . END=2326747 GT:DP:GQ:MIN_DP:PL 0:74:99:74:0,124 +chrX 2326748 . G T, 1901.04 . AS_QUALapprox=|1911|0;AS_VarDP=0|58|0;DP=62;QUALapprox=1911;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,58,0:58:99:1911,0,1911:0,0,30,28 +chrX 2326749 . A . . END=2326774 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1781 +chrX 2326775 . A C, 1886.04 . AS_QUALapprox=|1896|0;AS_VarDP=0|58|0;DP=59;QUALapprox=1896;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,58,0:58:99:1896,0,1896:0,0,28,30 +chrX 2326776 . C . . END=2326808 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,1435 +chrX 2326809 . CT C, 227.01 . AS_QUALapprox=|237|0;AS_VarDP=14|23|0;BaseQRankSum=-1.678;DP=45;MQRankSum=0.000;QUALapprox=237;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162000,45;ReadPosRankSum=-0.705;VarDP=37 GT:AD:DP:GQ:PL:SB 1:14,23,0:37:99:237,0,602:6,8,13,10 +chrX 2326811 . T . . END=2327169 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,1429 +chrX 2327170 . G T, 83.04 . AS_QUALapprox=|93|0;AS_VarDP=31|34|0;BaseQRankSum=-0.114;DP=72;MQRankSum=0.000;QUALapprox=93;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;ReadPosRankSum=-0.624;VarDP=65 GT:AD:DP:GQ:PL:SB 1:31,34,0:65:93:93,0,1111:23,8,18,16 +chrX 2327171 . C . . END=2327775 GT:DP:GQ:MIN_DP:PL 0:74:99:74:0,199 +chrX 2327776 . A G, 709.04 . AS_QUALapprox=|719|0;AS_VarDP=20|41|0;BaseQRankSum=-1.287;DP=63;MQRankSum=0.000;QUALapprox=719;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;ReadPosRankSum=-1.990;VarDP=61 GT:AD:DP:GQ:PL:SB 1:20,41,0:61:99:719,0,1404:7,13,20,21 +chrX 2327777 . T . . END=2327971 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1587 +chrX 2327972 . T C, 1527.04 . AS_QUALapprox=|1537|0;AS_VarDP=0|49|0;DP=50;QUALapprox=1537;RAW_GT_COUNT=0,0,1;RAW_MQandDP=173099,50;VarDP=49 GT:AD:DP:GQ:PL:SB 1:0,49,0:49:99:1537,0,1537:0,0,26,23 +chrX 2327973 . G . . END=2328078 GT:DP:GQ:MIN_DP:PL 0:46:99:46:0,318 +chrX 2328079 . C CAAAAAAAAA, 1935.01 . AS_QUALapprox=|1945|0;AS_VarDP=0|44|0;DP=56;QUALapprox=1945;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183669,56;VarDP=44 GT:AD:DP:GQ:PL:SB 1:0,44,0:44:99:1945,0,1948:0,0,23,21 +chrX 2328080 . A . . END=2328503 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,371 +chrX 2328504 . C G, 0.07 . AS_QUALapprox=|6|0;AS_VarDP=26|26|0;BaseQRankSum=0.702;DP=53;MQRankSum=1.038;QUALapprox=6;RAW_GT_COUNT=0,0,1;RAW_MQandDP=189700,53;ReadPosRankSum=-0.055;VarDP=52 GT:AD:DP:GQ:PL:SB 1:26,26,0:52:6:6,0,859:15,11,13,13 +chrX 2328505 . C . . END=2329037 GT:DP:GQ:MIN_DP:PL 0:73:99:73:0,1632 +chrX 2329038 . T C, 2150.04 . AS_QUALapprox=|2160|0;AS_VarDP=1|71|0;BaseQRankSum=1.356;DP=73;MQRankSum=0.000;QUALapprox=2160;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262681,73;ReadPosRankSum=-1.059;VarDP=72 GT:AD:DP:GQ:PL:SB 1:1,71,0:72:99:2160,0,2185:1,0,27,44 +chrX 2329039 . G . . END=2329347 GT:DP:GQ:MIN_DP:PL 0:78:99:78:0,1800 +chrX 2329348 . T C, 2120.04 . AS_QUALapprox=|2130|0;AS_VarDP=1|67|0;BaseQRankSum=-0.447;DP=72;MQRankSum=0.000;QUALapprox=2130;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;ReadPosRankSum=-0.051;VarDP=68 GT:AD:DP:GQ:PL:SB 1:1,67,0:68:99:2130,0,2165:0,1,33,34 +chrX 2329349 . A . . END=2329809 GT:DP:GQ:MIN_DP:PL 0:56:70:56:0,70 +chrX 2329810 . A G, 163.04 . AS_QUALapprox=|173|0;AS_VarDP=28|34|0;BaseQRankSum=-1.061;DP=65;MQRankSum=0.000;QUALapprox=173;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;ReadPosRankSum=0.587;VarDP=62 GT:AD:DP:GQ:PL:SB 1:28,34,0:62:99:173,0,1091:13,15,19,15 +chrX 2329811 . G . . END=2330061 GT:DP:GQ:MIN_DP:PL 0:46:99:46:0,810 +chrX 2330062 . C G, 1223.04 . AS_QUALapprox=|1233|0;AS_VarDP=0|29|0;DP=29;QUALapprox=1233;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:1233,0,1233:0,0,24,5 +chrX 2330063 . A . . END=2330069 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,739 +chrX 2330070 . CGGCGGGGGGG C,CGGGGG, 679.01 . AS_QUALapprox=|575|689|0;AS_VarDP=2|9|12|0;DP=59;MQRankSum=1.863;QUALapprox=689;RAW_GT_COUNT=0,0,1;RAW_MQandDP=145148,59;VarDP=23 GT:AD:DP:GQ:PL:SB 2:2,9,12,0:23:99:689,114,0,649:0,2,18,3 +chrX 2330076 . G *,A, 65.04 . AS_QUALapprox=|0|630|0;AS_VarDP=1|9|10|0;BaseQRankSum=0.000;DP=45;MQRankSum=3.329;QUALapprox=630;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115726,45;ReadPosRankSum=-1.215;VarDP=20 GT:AD:DP:GQ:PL:SB 2:1,9,10,0:20:45:630,45,0,562:0,1,17,2 +chrX 2330078 . G *,A, 155.04 . AS_QUALapprox=|0|699|0;AS_VarDP=1|9|12|0;BaseQRankSum=0.000;DP=54;MQRankSum=2.905;QUALapprox=699;RAW_GT_COUNT=0,0,1;RAW_MQandDP=130108,54;ReadPosRankSum=-1.042;VarDP=22 GT:AD:DP:GQ:PL:SB 2:1,9,12,0:22:99:699,135,0,642:0,1,18,3 +chrX 2330081 . G . . END=2330082 GT:DP:GQ:MIN_DP:PL 0:45:0:27:0,0 +chrX 2330083 . G . . END=2330083 GT:DP:GQ:MIN_DP:PL 0:24:39:24:0,39 +chrX 2330084 . G . . END=2330084 GT:DP:GQ:MIN_DP:PL 0:60:17:60:0,17 +chrX 2330085 . G . . END=2330085 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,849 +chrX 2330086 . G . . END=2330086 GT:DP:GQ:MIN_DP:PL 0:63:17:63:0,17 +chrX 2330087 . G . . END=2330100 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,589 +chrX 2330101 . GGAGA G,GGA, 710.01 . AS_QUALapprox=|720|379|0;AS_VarDP=0|19|10|0;DP=76;QUALapprox=720;RAW_GT_COUNT=0,0,1;RAW_MQandDP=177576,76;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,19,10,0:29:99:720,0,341,722:0,0,17,12 +chrX 2330106 . G . . END=2330168 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,782 +chrX 2330169 . T A, 1171.04 . AS_QUALapprox=|1181|0;AS_VarDP=0|36|0;DP=38;QUALapprox=1181;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;VarDP=36 GT:AD:DP:GQ:PL:SB 1:0,36,0:36:99:1181,0,1181:0,0,19,17 +chrX 2330170 . G . . END=2330687 GT:DP:GQ:MIN_DP:PL 0:38:47:29:0,47 +chrX 2330688 . TAGG T, 166.01 . AS_QUALapprox=|176|0;AS_VarDP=16|20|0;BaseQRankSum=-1.480;DP=38;MQRankSum=0.000;QUALapprox=176;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;ReadPosRankSum=0.817;VarDP=36 GT:AD:DP:GQ:PL:SB 1:16,20,0:36:99:176,0,884:12,4,13,7 +chrX 2330692 . A . . END=2331220 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1050 +chrX 2331221 . C T, 1907.04 . AS_QUALapprox=|1917|0;AS_VarDP=0|58|0;DP=59;QUALapprox=1917;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,58,0:58:99:1917,0,1917:0,0,26,32 +chrX 2331222 . C . . END=2331502 GT:DP:GQ:MIN_DP:PL 0:56:80:56:0,80 +chrX 2331503 . C A, 373.04 . AS_QUALapprox=|383|0;AS_VarDP=17|26|0;BaseQRankSum=-0.915;DP=43;MQRankSum=-2.281;QUALapprox=383;RAW_GT_COUNT=0,0,1;RAW_MQandDP=148477,43;ReadPosRankSum=-0.199;VarDP=43 GT:AD:DP:GQ:PL:SB 1:17,26,0:43:99:383,0,1137:5,12,11,15 +chrX 2331504 . A . . END=2331505 GT:DP:GQ:MIN_DP:PL 0:43:99:43:0,1400 +chrX 2331506 . A G, 373.04 . AS_QUALapprox=|383|0;AS_VarDP=17|26|0;BaseQRankSum=-1.798;DP=43;MQRankSum=-2.281;QUALapprox=383;RAW_GT_COUNT=0,0,1;RAW_MQandDP=148477,43;ReadPosRankSum=-0.385;VarDP=43 GT:AD:DP:GQ:PL:SB 1:17,26,0:43:99:383,0,1137:5,12,11,15 +chrX 2331507 . G . . END=2332371 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1469 +chrX 2332372 . T G, 139.04 . AS_QUALapprox=|149|0;AS_VarDP=23|28|0;BaseQRankSum=-0.418;DP=52;MQRankSum=0.000;QUALapprox=149;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;ReadPosRankSum=1.212;VarDP=51 GT:AD:DP:GQ:PL:SB 1:23,28,0:51:99:149,0,938:11,12,9,19 +chrX 2332373 . T . . END=2333228 GT:DP:GQ:MIN_DP:PL 0:68:39:57:0,39 +chrX 2333229 . G C, 191.04 . AS_QUALapprox=|201|0;AS_VarDP=36|42|0;BaseQRankSum=0.787;DP=80;MQRankSum=0.000;QUALapprox=201;RAW_GT_COUNT=0,0,1;RAW_MQandDP=288000,80;ReadPosRankSum=0.286;VarDP=78 GT:AD:DP:GQ:PL:SB 1:36,42,0:78:99:201,0,1309:20,16,22,20 +chrX 2333230 . T . . END=2333474 GT:DP:GQ:MIN_DP:PL 0:73:99:73:0,328 +chrX 2333475 . T C, 1964.04 . AS_QUALapprox=|1974|0;AS_VarDP=0|61|0;DP=63;QUALapprox=1974;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,61,0:61:99:1974,0,1974:0,0,29,32 +chrX 2333476 . G . . END=2334169 GT:DP:GQ:MIN_DP:PL 0:66:29:64:0,29 +chrX 2334170 . C CTTTTTTTTTTTT,CTTTTTTTTTTTTT, 962.01 . AS_QUALapprox=|783|972|0;AS_VarDP=0|3|15|0;DP=35;QUALapprox=972;RAW_GT_COUNT=0,0,1;RAW_MQandDP=119376,35;VarDP=18 GT:AD:DP:GQ:PL:SB 2:0,3,15,0:18:99:972,189,0,612:0,0,14,4 +chrX 2334171 . T . . END=2334181 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,675 +chrX 2334182 . G . . END=2334184 GT:DP:GQ:MIN_DP:PL 0:53:0:53:0,0 +chrX 2334185 . A . . END=2334361 GT:DP:GQ:MIN_DP:PL 0:50:78:50:0,78 +chrX 2334362 . A G, 2037.04 . AS_QUALapprox=|2047|0;AS_VarDP=0|51|0;DP=53;QUALapprox=2047;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=51 GT:AD:DP:GQ:PL:SB 1:0,51,0:51:99:2047,0,2047:0,0,26,25 +chrX 2334363 . C . . END=2334369 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,1648 +chrX 2334370 . C T, 362.04 . AS_QUALapprox=|372|0;AS_VarDP=19|30|0;BaseQRankSum=0.117;DP=51;MQRankSum=0.000;QUALapprox=372;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;ReadPosRankSum=-0.482;VarDP=49 GT:AD:DP:GQ:PL:SB 1:19,30,0:49:99:372,0,998:9,10,16,14 +chrX 2334371 . G . . END=2334555 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1617 +chrX 2334556 . T C, 8 . AS_QUALapprox=|18|0;AS_VarDP=28|32|0;BaseQRankSum=-2.293;DP=62;MQRankSum=0.000;QUALapprox=18;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;ReadPosRankSum=0.126;VarDP=60 GT:AD:DP:GQ:PL:SB 1:28,32,0:60:18:18,0,952:15,13,17,15 +chrX 2334557 . G . . END=2334571 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1800 +chrX 2334572 . A G, 159.04 . AS_QUALapprox=|169|0;AS_VarDP=31|35|0;BaseQRankSum=0.456;DP=68;MQRankSum=0.000;QUALapprox=169;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;ReadPosRankSum=-0.026;VarDP=66 GT:AD:DP:GQ:PL:SB 1:31,35,0:66:99:169,0,1126:17,14,19,16 +chrX 2334573 . C . . END=2334597 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1800 +chrX 2334598 . T C, 2286.04 . AS_QUALapprox=|2296|0;AS_VarDP=0|72|0;DP=73;QUALapprox=2296;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,72,0:72:99:2296,0,2296:0,0,34,38 +chrX 2334599 . A . . END=2335183 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1349 +chrX 2335184 . C A,CA, 145.01 . AS_QUALapprox=|0|155|0;AS_VarDP=18|2|19|0;BaseQRankSum=-0.295;DP=57;MQRankSum=0.147;QUALapprox=155;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201200,57;ReadPosRankSum=0.719;VarDP=39 GT:AD:DP:GQ:PL:SB 2:18,2,19,0:39:99:155,1088,0,858:11,7,12,9 +chrX 2335185 . A . . END=2336268 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,208 +chrX 2336269 . G A, 0.02 . AS_QUALapprox=|4|0;AS_VarDP=30|32|0;BaseQRankSum=-1.445;DP=63;MQRankSum=0.000;QUALapprox=4;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;ReadPosRankSum=-0.465;VarDP=62 GT:AD:DP:GQ:PL:SB 1:30,32,0:62:4:4,0,1007:10,20,17,15 +chrX 2336270 . A . . END=2336603 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1800 +chrX 2336604 . G GT, 89.01 . AS_QUALapprox=|99|0;AS_VarDP=18|21|0;BaseQRankSum=-1.417;DP=52;MQRankSum=1.132;QUALapprox=99;RAW_GT_COUNT=0,0,1;RAW_MQandDP=186625,52;ReadPosRankSum=0.789;VarDP=39 GT:AD:DP:GQ:PL:SB 1:18,21,0:39:99:99,0,554:9,9,15,6 +chrX 2336605 . T . . END=2336724 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1459 +chrX 2336725 . A C, 261.04 . AS_QUALapprox=|271|0;AS_VarDP=26|34|0;BaseQRankSum=0.800;DP=63;MQRankSum=0.000;QUALapprox=271;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;ReadPosRankSum=0.075;VarDP=60 GT:AD:DP:GQ:PL:SB 1:26,34,0:60:99:271,0,1080:12,14,15,19 +chrX 2336726 . C . . END=2336847 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1800 +chrX 2336848 . TATAG T,TATAGATAG, 843.01 . AS_QUALapprox=|759|853|0;AS_VarDP=2|28|27|0;BaseQRankSum=1.198;DP=67;MQRankSum=0.000;QUALapprox=853;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;ReadPosRankSum=-0.088;VarDP=57 GT:AD:DP:GQ:PL:SB 2:2,28,27,0:57:94:853,94,0,1113:1,1,26,29 +chrX 2336853 . A . . END=2337211 GT:DP:GQ:MIN_DP:PL 0:65:46:59:0,46 +chrX 2337212 . T C, 203.04 . AS_QUALapprox=|213|0;AS_VarDP=28|36|0;BaseQRankSum=-1.611;DP=68;MQRankSum=0.000;QUALapprox=213;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;ReadPosRankSum=1.618;VarDP=64 GT:AD:DP:GQ:PL:SB 1:28,36,0:64:99:213,0,1131:13,15,22,14 +chrX 2337213 . A . . END=2337971 GT:DP:GQ:MIN_DP:PL 0:62:85:62:0,85 +chrX 2337972 . G T, 342.04 . AS_QUALapprox=|352|0;AS_VarDP=19|26|0;BaseQRankSum=-0.283;DP=46;MQRankSum=0.000;QUALapprox=352;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;ReadPosRankSum=0.308;VarDP=45 GT:AD:DP:GQ:PL:SB 1:19,26,0:45:99:352,0,1159:8,11,12,14 +chrX 2337973 . A . . END=2337973 GT:DP:GQ:MIN_DP:PL 0:42:99:42:0,1369 +chrX 2337974 . C A, 342.04 . AS_QUALapprox=|352|0;AS_VarDP=19|26|0;BaseQRankSum=-0.289;DP=46;MQRankSum=0.000;QUALapprox=352;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;ReadPosRankSum=0.119;VarDP=45 GT:AD:DP:GQ:PL:SB 1:19,26,0:45:99:352,0,1159:8,11,12,14 +chrX 2337975 . G . . END=2338005 GT:DP:GQ:MIN_DP:PL 0:40:99:40:0,1069 +chrX 2338006 . CA C,CAAAA, 597.01 . AS_QUALapprox=|288|607|0;AS_VarDP=0|15|21|0;DP=48;QUALapprox=607;RAW_GT_COUNT=0,0,1;RAW_MQandDP=170800,48;VarDP=36 GT:AD:DP:GQ:PL:SB 2:0,15,21,0:36:99:607,319,0,786:0,0,16,20 +chrX 2338008 . A . . END=2338161 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1365 +chrX 2338162 . G A, 541.04 . AS_QUALapprox=|551|0;AS_VarDP=14|28|0;BaseQRankSum=2.404;DP=44;MQRankSum=-0.657;QUALapprox=551;RAW_GT_COUNT=0,0,1;RAW_MQandDP=157825,44;ReadPosRankSum=1.508;VarDP=42 GT:AD:DP:GQ:PL:SB 1:14,28,0:42:99:551,0,922:8,6,13,15 +chrX 2338163 . T . . END=2338952 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1150 +chrX 2338953 . A G, 198.04 . AS_QUALapprox=|208|0;AS_VarDP=30|38|0;BaseQRankSum=-0.695;DP=72;MQRankSum=0.000;QUALapprox=208;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;ReadPosRankSum=-0.426;VarDP=68 GT:AD:DP:GQ:PL:SB 1:30,38,0:68:99:208,0,1190:13,17,15,23 +chrX 2338954 . T . . END=2339557 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1375 +chrX 2339558 . A C, 144.04 . AS_QUALapprox=|154|0;AS_VarDP=32|39|0;BaseQRankSum=-1.696;DP=72;MQRankSum=0.000;QUALapprox=154;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;ReadPosRankSum=0.462;VarDP=71 GT:AD:DP:GQ:PL:SB 1:32,39,0:71:99:154,0,1195:19,13,21,18 +chrX 2339559 . G . . END=2340518 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,182 +chrX 2340519 . T G, 258.04 . AS_QUALapprox=|268|0;AS_VarDP=26|32|0;BaseQRankSum=2.860;DP=60;MQRankSum=0.000;QUALapprox=268;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;ReadPosRankSum=1.674;VarDP=58 GT:AD:DP:GQ:PL:SB 1:26,32,0:58:99:268,0,1111:14,12,13,19 +chrX 2340520 . C . . END=2340553 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1800 +chrX 2340554 . C T, 249.04 . AS_QUALapprox=|259|0;AS_VarDP=31|39|0;BaseQRankSum=0.722;DP=71;MQRankSum=0.000;QUALapprox=259;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;ReadPosRankSum=-0.308;VarDP=70 GT:AD:DP:GQ:PL:SB 1:31,39,0:70:99:259,0,1612:16,15,15,24 +chrX 2340555 . G . . END=2340576 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1800 +chrX 2340577 . C A, 105.04 . AS_QUALapprox=|115|0;AS_VarDP=30|33|0;BaseQRankSum=2.654;DP=64;MQRankSum=0.000;QUALapprox=115;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;ReadPosRankSum=-0.923;VarDP=63 GT:AD:DP:GQ:PL:SB 1:30,33,0:63:99:115,0,1424:16,14,12,21 +chrX 2340578 . A . . END=2340940 GT:DP:GQ:MIN_DP:PL 0:74:99:74:0,1800 +chrX 2340941 . C G, 2481.04 . AS_QUALapprox=|2491|0;AS_VarDP=0|76|0;DP=80;QUALapprox=2491;RAW_GT_COUNT=0,0,1;RAW_MQandDP=288000,80;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,76,0:76:99:2491,0,2491:0,0,42,34 +chrX 2340942 . G . . END=2341743 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,233 +chrX 2341744 . C CCCTGATAAGAAATAAAATATTACAAAATGCTT, 1689.01 . AS_QUALapprox=|1699|0;AS_VarDP=0|41|0;DP=57;QUALapprox=1699;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=41 GT:AD:DP:GQ:PL:SB 1:0,41,0:41:99:1699,0,1705:0,0,21,20 +chrX 2341745 . C . . END=2342252 GT:DP:GQ:MIN_DP:PL 0:70:45:66:0,45 +chrX 2342253 . T C, 2332.04 . AS_QUALapprox=|2342|0;AS_VarDP=0|71|0;DP=73;QUALapprox=2342;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,71,0:71:99:2342,0,2342:0,0,34,37 +chrX 2342254 . T . . END=2342891 GT:DP:GQ:MIN_DP:PL 0:70:81:70:0,81 +chrX 2342892 . C T, 67.04 . AS_QUALapprox=|77|0;AS_VarDP=31|29|0;BaseQRankSum=1.962;DP=63;MQRankSum=0.000;QUALapprox=77;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;ReadPosRankSum=1.236;VarDP=60 GT:AD:DP:GQ:PL:SB 1:31,29,0:60:77:77,0,928:17,14,11,18 +chrX 2342893 . G . . END=2343691 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1126 +chrX 2343692 . C T, 0.03 . AS_QUALapprox=|3|0;AS_VarDP=37|37|0;BaseQRankSum=0.472;DP=75;MQRankSum=0.000;QUALapprox=3;RAW_GT_COUNT=0,0,1;RAW_MQandDP=270000,75;ReadPosRankSum=-0.622;VarDP=74 GT:AD:DP:GQ:PL:SB 1:37,37,0:74:3:3,0,1189:17,20,17,20 +chrX 2343693 . C . . END=2344024 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1736 +chrX 2344025 . T C, 1781.04 . AS_QUALapprox=|1791|0;AS_VarDP=0|57|0;DP=62;QUALapprox=1791;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:1791,0,1791:0,0,25,32 +chrX 2344026 . G . . END=2344133 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1702 +chrX 2344134 . C T, 1652.04 . AS_QUALapprox=|1662|0;AS_VarDP=0|52|0;DP=54;QUALapprox=1662;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:1662,0,1662:0,0,22,30 +chrX 2344135 . G . . END=2344871 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1216 +chrX 2344872 . CATATATATATATAT C,CATATATAT, 472.01 . AS_QUALapprox=|482|0|0;AS_VarDP=2|20|7|0;BaseQRankSum=-0.819;DP=53;MQRankSum=0.000;QUALapprox=482;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;ReadPosRankSum=-0.248;VarDP=29 GT:AD:DP:GQ:PL:SB 1:2,20,7,0:29:99:482,0,489,721:1,1,13,14 +chrX 2344887 . A . . END=2345595 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1047 +chrX 2345596 . A G, 945.04 . AS_QUALapprox=|955|0;AS_VarDP=0|35|0;DP=36;QUALapprox=955;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129600,36;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,35,0:35:99:955,0,955:0,0,20,15 +chrX 2345597 . A . . END=2345654 GT:DP:GQ:MIN_DP:PL 0:38:99:38:0,957 +chrX 2345655 . CA C, 779.01 . AS_QUALapprox=|789|0;AS_VarDP=1|38|0;DP=52;MQRankSum=-0.116;QUALapprox=789;RAW_GT_COUNT=0,0,1;RAW_MQandDP=181200,52;VarDP=39 GT:AD:DP:GQ:PL:SB 1:1,38,0:39:99:789,0,810:0,1,16,22 +chrX 2345657 . A . . END=2346254 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1569 +chrX 2346255 . C CT,CCT, 3202.01 . AS_QUALapprox=|921|3212|0;AS_VarDP=0|1|71|0;DP=81;QUALapprox=3212;RAW_GT_COUNT=0,0,1;RAW_MQandDP=291600,81;VarDP=72 GT:AD:DP:GQ:PL:SB 2:0,1,71,0:72:99:3212,2291,0,2774:0,0,33,39 +chrX 2346256 . G . . END=2346561 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1572 +chrX 2346562 . A C, 1830.04 . AS_QUALapprox=|1840|0;AS_VarDP=0|55|0;DP=56;QUALapprox=1840;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:1840,0,1840:0,0,23,32 +chrX 2346563 . C . . END=2348697 GT:DP:GQ:MIN_DP:PL 0:62:36:57:0,36 +chrX 2348698 . T . . END=2348698 GT:DP:GQ:MIN_DP:PL 0:72:5:72:0,5 +chrX 2348699 . T . . END=2349337 GT:DP:GQ:MIN_DP:PL 0:55:46:55:0,46 +chrX 2349338 . C A,CA, 89.01 . AS_QUALapprox=|0|99|0;AS_VarDP=26|0|27|0;BaseQRankSum=0.016;DP=65;MQRankSum=0.000;QUALapprox=99;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;ReadPosRankSum=-0.837;VarDP=53 GT:AD:DP:GQ:PL:SB 2:26,0,27,0:53:99:99,1198,0,1016:11,15,9,18 +chrX 2349339 . A . . END=2349513 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1742 +chrX 2349514 . C T, 301.04 . AS_QUALapprox=|311|0;AS_VarDP=24|30|0;BaseQRankSum=2.092;DP=55;MQRankSum=0.186;QUALapprox=311;RAW_GT_COUNT=0,0,1;RAW_MQandDP=196418,55;ReadPosRankSum=0.449;VarDP=54 GT:AD:DP:GQ:PL:SB 1:24,30,0:54:99:311,0,1338:14,10,12,18 +chrX 2349515 . G . . END=2349516 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1747 +chrX 2349517 . G C, 267.04 . AS_QUALapprox=|277|0;AS_VarDP=25|30|0;BaseQRankSum=1.358;DP=55;MQRankSum=0.156;QUALapprox=277;RAW_GT_COUNT=0,0,1;RAW_MQandDP=196418,55;ReadPosRankSum=0.571;VarDP=55 GT:AD:DP:GQ:PL:SB 1:25,30,0:55:99:277,0,1338:15,10,12,18 +chrX 2349518 . T . . END=2349778 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1728 +chrX 2349779 . C T, 84.04 . AS_QUALapprox=|94|0;AS_VarDP=31|34|0;BaseQRankSum=-0.045;DP=66;MQRankSum=-0.488;QUALapprox=94;RAW_GT_COUNT=0,0,1;RAW_MQandDP=232449,66;ReadPosRankSum=-0.775;VarDP=65 GT:AD:DP:GQ:PL:SB 1:31,34,0:65:94:94,0,1071:15,16,18,16 +chrX 2349780 . G . . END=2349807 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1800 +chrX 2349808 . G . . END=2349808 GT:DP:GQ:MIN_DP:PL 0:60:9:60:0,9 +chrX 2349809 . A . . END=2349811 GT:DP:GQ:MIN_DP:PL 0:63:70:63:0,70 +chrX 2349812 . C . . END=2349812 GT:DP:GQ:MIN_DP:PL 0:59:0:59:0,0 +chrX 2349813 . G . . END=2349816 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1800 +chrX 2349817 . G . . END=2349817 GT:DP:GQ:MIN_DP:PL 0:58:0:58:0,0 +chrX 2349818 . G . . END=2349911 GT:DP:GQ:MIN_DP:PL 0:59:94:59:0,94 +chrX 2349912 . G A, 183.04 . AS_QUALapprox=|193|0;AS_VarDP=26|31|0;BaseQRankSum=0.992;DP=61;MQRankSum=-0.881;QUALapprox=193;RAW_GT_COUNT=0,0,1;RAW_MQandDP=217024,61;ReadPosRankSum=-2.100;VarDP=57 GT:AD:DP:GQ:PL:SB 1:26,31,0:57:99:193,0,992:11,15,13,18 +chrX 2349913 . C . . END=2350017 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1717 +chrX 2350018 . G A, 148.04 . AS_QUALapprox=|158|0;AS_VarDP=27|33|0;BaseQRankSum=-0.024;DP=62;MQRankSum=1.601;QUALapprox=158;RAW_GT_COUNT=0,0,1;RAW_MQandDP=221650,62;ReadPosRankSum=1.539;VarDP=60 GT:AD:DP:GQ:PL:SB 1:27,33,0:60:99:158,0,1097:13,14,14,19 +chrX 2350019 . A . . END=2351109 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,279 +chrX 2351110 . C T, 96.04 . AS_QUALapprox=|106|0;AS_VarDP=27|29|0;BaseQRankSum=0.817;DP=57;MQRankSum=0.000;QUALapprox=106;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;ReadPosRankSum=1.673;VarDP=56 GT:AD:DP:GQ:PL:SB 1:27,29,0:56:99:106,0,908:8,19,14,15 +chrX 2351111 . A . . END=2352015 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1514 +chrX 2352016 . A G, 84.04 . AS_QUALapprox=|94|0;AS_VarDP=34|37|0;BaseQRankSum=-0.054;DP=77;MQRankSum=0.000;QUALapprox=94;RAW_GT_COUNT=0,0,1;RAW_MQandDP=277200,77;ReadPosRankSum=0.489;VarDP=71 GT:AD:DP:GQ:PL:SB 1:34,37,0:71:94:94,0,1181:18,16,18,19 +chrX 2352017 . G . . END=2352081 GT:DP:GQ:MIN_DP:PL 0:74:99:74:0,1800 +chrX 2352082 . A G, 8 . AS_QUALapprox=|18|0;AS_VarDP=35|38|0;BaseQRankSum=-1.056;DP=75;MQRankSum=0.000;QUALapprox=18;RAW_GT_COUNT=0,0,1;RAW_MQandDP=270000,75;ReadPosRankSum=-0.039;VarDP=73 GT:AD:DP:GQ:PL:SB 1:35,38,0:73:18:18,0,1159:19,16,22,16 +chrX 2352083 . A . . END=2353257 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1578 +chrX 2353258 . C G, 139.04 . AS_QUALapprox=|149|0;AS_VarDP=38|44|0;BaseQRankSum=-0.487;DP=87;MQRankSum=0.000;QUALapprox=149;RAW_GT_COUNT=0,0,1;RAW_MQandDP=311536,87;ReadPosRankSum=-0.791;VarDP=82 GT:AD:DP:GQ:PL:SB 1:38,44,0:82:99:149,0,1368:21,17,23,21 +chrX 2353259 . G . . END=2353540 GT:DP:GQ:MIN_DP:PL 0:76:99:76:0,1787 +chrX 2353541 . G A, 131.04 . AS_QUALapprox=|141|0;AS_VarDP=33|39|0;BaseQRankSum=-1.349;DP=74;MQRankSum=-0.892;QUALapprox=141;RAW_GT_COUNT=0,0,1;RAW_MQandDP=264321,74;ReadPosRankSum=0.068;VarDP=72 GT:AD:DP:GQ:PL:SB 1:33,39,0:72:99:141,0,1258:18,15,22,17 +chrX 2353542 . A . . END=2353583 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1800 +chrX 2353584 . A ATT, 231.01 . AS_QUALapprox=|241|0;AS_VarDP=22|34|0;BaseQRankSum=-0.270;DP=74;MQRankSum=-1.397;QUALapprox=241;RAW_GT_COUNT=0,0,1;RAW_MQandDP=261746,74;ReadPosRankSum=-0.587;VarDP=56 GT:AD:DP:GQ:PL:SB 1:22,34,0:56:99:241,0,1014:12,10,15,19 +chrX 2353585 . T . . END=2354659 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,267 +chrX 2354660 . C T, 226.04 . AS_QUALapprox=|236|0;AS_VarDP=25|33|0;BaseQRankSum=-1.091;DP=62;MQRankSum=1.184;QUALapprox=236;RAW_GT_COUNT=0,0,1;RAW_MQandDP=222625,62;ReadPosRankSum=0.982;VarDP=58 GT:AD:DP:GQ:PL:SB 1:25,33,0:58:99:236,0,1085:15,10,15,18 +chrX 2354661 . C . . END=2355277 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1364 +chrX 2355278 . G A, 349.04 . AS_QUALapprox=|359|0;AS_VarDP=23|31|0;BaseQRankSum=0.798;DP=54;MQRankSum=0.000;QUALapprox=359;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;ReadPosRankSum=-0.070;VarDP=54 GT:AD:DP:GQ:PL:SB 1:23,31,0:54:99:359,0,1383:10,13,16,15 +chrX 2355279 . A . . END=2355282 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1752 +chrX 2355283 . C G, 383.04 . AS_QUALapprox=|393|0;AS_VarDP=22|31|0;BaseQRankSum=-0.609;DP=54;MQRankSum=0.000;QUALapprox=393;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;ReadPosRankSum=0.054;VarDP=53 GT:AD:DP:GQ:PL:SB 1:22,31,0:53:99:393,0,1383:9,13,16,15 +chrX 2355284 . G . . END=2355440 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1350 +chrX 2355441 . C G, 349.04 . AS_QUALapprox=|359|0;AS_VarDP=16|24|0;BaseQRankSum=3.229;DP=41;MQRankSum=0.000;QUALapprox=359;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147600,41;ReadPosRankSum=-0.663;VarDP=40 GT:AD:DP:GQ:PL:SB 1:16,24,0:40:99:359,0,1078:7,9,11,13 +chrX 2355442 . G . . END=2355443 GT:DP:GQ:MIN_DP:PL 0:39:99:39:0,1230 +chrX 2355444 . A T, 349.04 . AS_QUALapprox=|359|0;AS_VarDP=16|24|0;BaseQRankSum=0.474;DP=42;MQRankSum=0.000;QUALapprox=359;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151200,42;ReadPosRankSum=-0.525;VarDP=40 GT:AD:DP:GQ:PL:SB 1:16,24,0:40:99:359,0,1078:7,9,11,13 +chrX 2355445 . A . . END=2355510 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,624 +chrX 2355511 . TAAAAAAAAAAAA T,TAAAAAAAAAAAAAA, 60.01 . AS_QUALapprox=|0|70|0;AS_VarDP=0|12|4|0;DP=46;QUALapprox=70;RAW_GT_COUNT=0,0,1;RAW_MQandDP=159090,46;VarDP=16 GT:AD:DP:GQ:PL:SB 2:0,12,4,0:16:70:70,127,0,350:0,0,3,13 +chrX 2355524 . A . . END=2356408 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,358 +chrX 2356409 . T C, 231.04 . AS_QUALapprox=|241|0;AS_VarDP=24|31|0;BaseQRankSum=0.388;DP=61;MQRankSum=-0.843;QUALapprox=241;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219025,61;ReadPosRankSum=-1.053;VarDP=55 GT:AD:DP:GQ:PL:SB 1:24,31,0:55:99:241,0,1019:11,13,17,14 +chrX 2356410 . C . . END=2356714 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1648 +chrX 2356715 . T . . END=2356715 GT:DP:GQ:MIN_DP:PL 0:60:15:60:0,15 +chrX 2356716 . G . . END=2356731 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1800 +chrX 2356732 . G A, 70.04 . AS_QUALapprox=|80|0;AS_VarDP=28|30|0;BaseQRankSum=0.484;DP=61;MQRankSum=0.000;QUALapprox=80;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;ReadPosRankSum=0.389;VarDP=58 GT:AD:DP:GQ:PL:SB 1:28,30,0:58:80:80,0,1002:12,16,12,18 +chrX 2356733 . G . . END=2357416 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1493 +chrX 2357417 . C T, 219.04 . AS_QUALapprox=|229|0;AS_VarDP=35|39|0;BaseQRankSum=2.661;DP=76;MQRankSum=0.000;QUALapprox=229;RAW_GT_COUNT=0,0,1;RAW_MQandDP=273600,76;ReadPosRankSum=-0.601;VarDP=74 GT:AD:DP:GQ:PL:SB 1:35,39,0:74:99:229,0,1306:16,19,20,19 +chrX 2357418 . G . . END=2357699 GT:DP:GQ:MIN_DP:PL 0:74:99:74:0,1062 +chrX 2357700 . T TA, 80.01 . AS_QUALapprox=|90|0;AS_VarDP=16|21|0;BaseQRankSum=-2.123;DP=44;MQRankSum=-0.818;QUALapprox=90;RAW_GT_COUNT=0,0,1;RAW_MQandDP=157825,44;ReadPosRankSum=-0.690;VarDP=37 GT:AD:DP:GQ:PL:SB 1:16,21,0:37:90:90,0,413:11,5,10,11 +chrX 2357701 . A . . END=2358264 GT:DP:GQ:MIN_DP:PL 0:61:54:58:0,54 +chrX 2358265 . G A, 284.04 . AS_QUALapprox=|294|0;AS_VarDP=29|36|0;BaseQRankSum=2.310;DP=66;MQRankSum=0.000;QUALapprox=294;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;ReadPosRankSum=-0.040;VarDP=65 GT:AD:DP:GQ:PL:SB 1:29,36,0:65:99:294,0,1241:12,17,13,23 +chrX 2358266 . T . . END=2358404 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1800 +chrX 2358405 . C T, 2152.04 . AS_QUALapprox=|2162|0;AS_VarDP=0|66|0;DP=66;QUALapprox=2162;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=66 GT:AD:DP:GQ:PL:SB 1:0,66,0:66:99:2162,0,2162:0,0,36,30 +chrX 2358406 . A . . END=2358823 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1379 +chrX 2358824 . C G, 253.04 . AS_QUALapprox=|263|0;AS_VarDP=21|28|0;BaseQRankSum=1.319;DP=51;MQRankSum=0.000;QUALapprox=263;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;ReadPosRankSum=-0.798;VarDP=49 GT:AD:DP:GQ:PL:SB 1:21,28,0:49:99:263,0,948:14,7,14,14 +chrX 2358825 . A . . END=2359396 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1076 +chrX 2359397 . G A, 119.04 . AS_QUALapprox=|129|0;AS_VarDP=30|34|0;BaseQRankSum=-0.212;DP=70;MQRankSum=0.000;QUALapprox=129;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;ReadPosRankSum=-0.437;VarDP=64 GT:AD:DP:GQ:PL:SB 1:30,34,0:64:99:129,0,1142:12,18,20,14 +chrX 2359398 . C . . END=2360229 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1717 +chrX 2360230 . G T, 2114.04 . AS_QUALapprox=|2124|0;AS_VarDP=1|64|0;BaseQRankSum=2.667;DP=65;MQRankSum=0.000;QUALapprox=2124;RAW_GT_COUNT=0,0,1;RAW_MQandDP=233425,65;ReadPosRankSum=1.360;VarDP=65 GT:AD:DP:GQ:PL:SB 1:1,64,0:65:99:2124,0,2149:1,0,30,34 +chrX 2360231 . T . . END=2360310 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1800 +chrX 2360311 . G A, 2045.04 . AS_QUALapprox=|2055|0;AS_VarDP=0|62|0;DP=63;QUALapprox=2055;RAW_GT_COUNT=0,0,1;RAW_MQandDP=224076,63;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:2055,0,2055:0,0,32,30 +chrX 2360312 . T . . END=2360790 GT:DP:GQ:MIN_DP:PL 0:62:94:62:0,94 +chrX 2360791 . G C, 173.04 . AS_QUALapprox=|183|0;AS_VarDP=28|35|0;BaseQRankSum=-1.272;DP=64;MQRankSum=0.000;QUALapprox=183;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;ReadPosRankSum=-0.325;VarDP=63 GT:AD:DP:GQ:PL:SB 1:28,35,0:63:99:183,0,1101:17,11,21,14 +chrX 2360792 . G . . END=2361424 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1216 +chrX 2361425 . T C, 44.04 . AS_QUALapprox=|54|0;AS_VarDP=34|35|0;BaseQRankSum=0.064;DP=72;MQRankSum=-1.384;QUALapprox=54;RAW_GT_COUNT=0,0,1;RAW_MQandDP=258050,72;ReadPosRankSum=-0.618;VarDP=69 GT:AD:DP:GQ:PL:SB 1:34,35,0:69:54:54,0,1176:19,15,19,16 +chrX 2361426 . T . . END=2367434 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,445 +chrX 2367435 . C CA, 343.01 . AS_QUALapprox=|353|0;AS_VarDP=12|28|0;BaseQRankSum=-0.296;DP=51;MQRankSum=0.000;QUALapprox=353;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;ReadPosRankSum=-1.808;VarDP=40 GT:AD:DP:GQ:PL:SB 1:12,28,0:40:99:353,0,689:7,5,11,17 +chrX 2367436 . A . . END=2368145 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1479 +chrX 2368146 . G C, 80.04 . AS_QUALapprox=|90|0;AS_VarDP=22|24|0;BaseQRankSum=1.103;DP=48;MQRankSum=0.000;QUALapprox=90;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;ReadPosRankSum=1.595;VarDP=46 GT:AD:DP:GQ:PL:SB 1:22,24,0:46:90:90,0,809:9,13,13,11 +chrX 2368147 . G . . END=2369843 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1205 +chrX 2369844 . T G, 172.04 . AS_QUALapprox=|182|0;AS_VarDP=22|29|0;BaseQRankSum=-2.232;DP=54;MQRankSum=0.000;QUALapprox=182;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;ReadPosRankSum=-3.568;VarDP=51 GT:AD:DP:GQ:PL:SB 1:22,29,0:51:99:182,0,947:13,9,15,14 +chrX 2369845 . G . . END=2371021 GT:DP:GQ:MIN_DP:PL 0:56:42:44:0,42 +chrX 2371022 . T G, 261.04 . AS_QUALapprox=|271|0;AS_VarDP=20|30|0;BaseQRankSum=-1.440;DP=50;MQRankSum=0.000;QUALapprox=271;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;ReadPosRankSum=-0.307;VarDP=50 GT:AD:DP:GQ:PL:SB 1:20,30,0:50:99:271,0,946:9,11,15,15 +chrX 2371023 . G . . END=2371159 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1376 +chrX 2371160 . C G, 3.21 . AS_QUALapprox=|13|0;AS_VarDP=26|26|0;BaseQRankSum=0.813;DP=52;MQRankSum=0.000;QUALapprox=13;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;ReadPosRankSum=0.165;VarDP=52 GT:AD:DP:GQ:PL:SB 1:26,26,0:52:13:13,0,826:10,16,7,19 +chrX 2371161 . G . . END=2371403 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,945 +chrX 2371404 . A ATTACCATAGACCCTCCTTCCG, 421.01 . AS_QUALapprox=|431|0;AS_VarDP=18|28|0;BaseQRankSum=-1.126;DP=54;MQRankSum=0.000;QUALapprox=431;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;ReadPosRankSum=-1.892;VarDP=46 GT:AD:DP:GQ:PL:SB 1:18,28,0:46:99:431,0,1215:9,9,16,12 +chrX 2371405 . T . . END=2371689 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1122 +chrX 2371690 . C A, 1310.04 . AS_QUALapprox=|1320|0;AS_VarDP=2|42|0;BaseQRankSum=3.160;DP=47;MQRankSum=0.000;QUALapprox=1320;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;ReadPosRankSum=0.705;VarDP=44 GT:AD:DP:GQ:PL:SB 1:2,42,0:44:99:1320,0,1339:0,2,26,16 +chrX 2371691 . G . . END=2372839 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,446 +chrX 2372840 . A G, 254.04 . AS_QUALapprox=|264|0;AS_VarDP=23|30|0;BaseQRankSum=0.220;DP=56;MQRankSum=0.000;QUALapprox=264;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;ReadPosRankSum=-0.808;VarDP=53 GT:AD:DP:GQ:PL:SB 1:23,30,0:53:99:264,0,993:13,10,16,14 +chrX 2372841 . A . . END=2373023 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1752 +chrX 2373024 . A G, 315.04 . AS_QUALapprox=|325|0;AS_VarDP=25|34|0;BaseQRankSum=0.860;DP=59;MQRankSum=0.000;QUALapprox=325;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;ReadPosRankSum=0.322;VarDP=59 GT:AD:DP:GQ:PL:SB 1:25,34,0:59:99:325,0,1125:14,11,21,13 +chrX 2373025 . G . . END=2397635 GT:DP:GQ:MIN_DP:PL 0:63:75:63:0,75 +chrX 2397636 . AT A, 2139.01 . AS_QUALapprox=|2149|0;AS_VarDP=0|75|0;DP=82;QUALapprox=2149;RAW_GT_COUNT=0,0,1;RAW_MQandDP=295200,82;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,75,0:75:99:2149,0,2149:0,0,32,43 +chrX 2397638 . T . . END=2397929 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1244 +chrX 2397930 . G GCACA, 1876.01 . AS_QUALapprox=|1886|0;AS_VarDP=0|43|0;DP=49;QUALapprox=1886;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=43 GT:AD:DP:GQ:PL:SB 1:0,43,0:43:99:1886,0,1886:0,0,27,16 +chrX 2397931 . C . . END=2397954 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,1513 +chrX 2397955 . T C, 2100.04 . AS_QUALapprox=|2110|0;AS_VarDP=0|49|0;DP=50;QUALapprox=2110;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=49 GT:AD:DP:GQ:PL:SB 1:0,49,0:49:99:2110,0,2110:0,0,32,17 +chrX 2397956 . A . . END=2398447 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1451 +chrX 2398448 . C T, 1836.04 . AS_QUALapprox=|1846|0;AS_VarDP=0|54|0;DP=54;QUALapprox=1846;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=54 GT:AD:DP:GQ:PL:SB 1:0,54,0:54:99:1846,0,1846:0,0,27,27 +chrX 2398449 . G . . END=2399000 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1036 +chrX 2399001 . C T, 2615.04 . AS_QUALapprox=|2625|0;AS_VarDP=0|60|0;DP=60;QUALapprox=2625;RAW_GT_COUNT=0,0,1;RAW_MQandDP=213850,60;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:2625,0,2625:0,0,28,32 +chrX 2399002 . G . . END=2399008 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1800 +chrX 2399009 . A C, 2649.04 . AS_QUALapprox=|2659|0;AS_VarDP=0|61|0;DP=62;QUALapprox=2659;RAW_GT_COUNT=0,0,1;RAW_MQandDP=221050,62;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,61,0:61:99:2659,0,2659:0,0,30,31 +chrX 2399010 . G . . END=2399127 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1558 +chrX 2399128 . A AAAATTAAACC, 2542.01 . AS_QUALapprox=|2552|0;AS_VarDP=0|57|0;DP=60;QUALapprox=2552;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:2552,0,2553:0,0,29,28 +chrX 2399129 . T . . END=2399171 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,1533 +chrX 2399172 . A G, 1548.04 . AS_QUALapprox=|1558|0;AS_VarDP=0|47|0;DP=49;QUALapprox=1558;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=47 GT:AD:DP:GQ:PL:SB 1:0,47,0:47:99:1558,0,1558:0,0,23,24 +chrX 2399173 . T . . END=2399718 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,793 +chrX 2399719 . A G, 1013.04 . AS_QUALapprox=|1023|0;AS_VarDP=0|26|0;DP=29;QUALapprox=1023;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:1023,0,1023:0,0,19,7 +chrX 2399720 . A . . END=2399741 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,526 +chrX 2399742 . AC A, 210.01 . AS_QUALapprox=|220|0;AS_VarDP=3|11|0;BaseQRankSum=0.298;DP=49;MQRankSum=0.000;QUALapprox=220;RAW_GT_COUNT=0,0,1;RAW_MQandDP=171376,49;ReadPosRankSum=2.026;VarDP=14 GT:AD:DP:GQ:PL:SB 1:3,11,0:14:99:220,0,285:2,1,6,5 +chrX 2399744 . A . . END=2400278 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1261 +chrX 2400279 . A G, 2204.04 . AS_QUALapprox=|2214|0;AS_VarDP=0|66|0;DP=68;QUALapprox=2214;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;VarDP=66 GT:AD:DP:GQ:PL:SB 1:0,66,0:66:99:2214,0,2214:0,0,31,35 +chrX 2400280 . T . . END=2401107 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1254 +chrX 2401108 . CT C, 566.01 . AS_QUALapprox=|576|0;AS_VarDP=3|35|0;BaseQRankSum=-0.947;DP=55;MQRankSum=0.000;QUALapprox=576;RAW_GT_COUNT=0,0,1;RAW_MQandDP=193769,55;ReadPosRankSum=0.434;VarDP=38 GT:AD:DP:GQ:PL:SB 1:3,35,0:38:99:576,0,689:3,0,15,20 +chrX 2401110 . T . . END=2401825 GT:DP:GQ:MIN_DP:PL 0:74:99:74:0,1547 +chrX 2401826 . T G, 2645.04 . AS_QUALapprox=|2655|0;AS_VarDP=1|81|0;BaseQRankSum=2.111;DP=84;MQRankSum=0.000;QUALapprox=2655;RAW_GT_COUNT=0,0,1;RAW_MQandDP=302400,84;ReadPosRankSum=-0.972;VarDP=82 GT:AD:DP:GQ:PL:SB 1:1,81,0:82:99:2655,0,2679:1,0,30,51 +chrX 2401827 . A . . END=2401986 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1800 +chrX 2401987 . A C, 1824.04 . AS_QUALapprox=|1834|0;AS_VarDP=2|62|0;BaseQRankSum=0.445;DP=64;MQRankSum=0.000;QUALapprox=1834;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;ReadPosRankSum=0.868;VarDP=64 GT:AD:DP:GQ:PL:SB 1:2,62,0:64:99:1834,0,1894:1,1,30,32 +chrX 2401988 . G . . END=2402411 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1576 +chrX 2402412 . G C, 1701.04 . AS_QUALapprox=|1711|0;AS_VarDP=0|51|0;DP=52;QUALapprox=1711;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=51 GT:AD:DP:GQ:PL:SB 1:0,51,0:51:99:1711,0,1711:0,0,25,26 +chrX 2402413 . A . . END=2402694 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1265 +chrX 2402695 . C T, 2678.04 . AS_QUALapprox=|2688|0;AS_VarDP=0|63|0;DP=65;QUALapprox=2688;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,63,0:63:99:2688,0,2688:0,0,39,24 +chrX 2402696 . T . . END=2402705 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1800 +chrX 2402706 . TA T, 2611.01 . AS_QUALapprox=|2621|0;AS_VarDP=0|60|0;DP=60;QUALapprox=2621;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:2621,0,2621:0,0,37,23 +chrX 2402708 . A . . END=2402726 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1800 +chrX 2402727 . C T, 2609.04 . AS_QUALapprox=|2619|0;AS_VarDP=0|63|0;DP=64;QUALapprox=2619;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,63,0:63:99:2619,0,2619:0,0,36,27 +chrX 2402728 . A . . END=2403743 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1108 +chrX 2403744 . T G, 1588.04 . AS_QUALapprox=|1598|0;AS_VarDP=0|50|0;DP=52;QUALapprox=1598;RAW_GT_COUNT=0,0,1;RAW_MQandDP=181083,52;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,50,0:50:99:1598,0,1598:0,0,23,27 +chrX 2403745 . A . . END=2403855 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,1235 +chrX 2403856 . C CAA, 275.01 . AS_QUALapprox=|285|0;AS_VarDP=17|28|0;BaseQRankSum=1.635;DP=62;MQRankSum=0.000;QUALapprox=285;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;ReadPosRankSum=-2.497;VarDP=45 GT:AD:DP:GQ:PL:SB 1:17,28,0:45:99:285,0,823:11,6,16,12 +chrX 2403857 . A . . END=2404113 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1800 +chrX 2404114 . T C, 1943.04 . AS_QUALapprox=|1953|0;AS_VarDP=0|60|0;DP=62;QUALapprox=1953;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:1953,0,1953:0,0,27,33 +chrX 2404115 . T . . END=2404740 GT:DP:GQ:MIN_DP:PL 0:67:65:61:0,65 +chrX 2404741 . C T, 128.04 . AS_QUALapprox=|138|0;AS_VarDP=32|35|0;BaseQRankSum=0.839;DP=67;MQRankSum=0.000;QUALapprox=138;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;ReadPosRankSum=0.013;VarDP=67 GT:AD:DP:GQ:PL:SB 1:32,35,0:67:99:138,0,1145:14,18,22,13 +chrX 2404742 . G . . END=2404967 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1800 +chrX 2404968 . T C, 2536.04 . AS_QUALapprox=|2546|0;AS_VarDP=0|77|0;DP=78;QUALapprox=2546;RAW_GT_COUNT=0,0,1;RAW_MQandDP=280800,78;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,77,0:77:99:2546,0,2546:0,0,39,38 +chrX 2404969 . T . . END=2405002 GT:DP:GQ:MIN_DP:PL 0:78:99:78:0,1800 +chrX 2405003 . C T, 2619.04 . AS_QUALapprox=|2629|0;AS_VarDP=0|81|0;DP=83;QUALapprox=2629;RAW_GT_COUNT=0,0,1;RAW_MQandDP=298800,83;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,81,0:81:99:2629,0,2629:0,0,37,44 +chrX 2405004 . C . . END=2405446 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1693 +chrX 2405447 . T C, 1804.04 . AS_QUALapprox=|1814|0;AS_VarDP=0|59|0;DP=63;QUALapprox=1814;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223776,63;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:1814,0,1814:0,0,24,35 +chrX 2405448 . G . . END=2405917 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1445 +chrX 2405918 . A AC, 2334.01 . AS_QUALapprox=|2344|0;AS_VarDP=1|57|0;BaseQRankSum=-0.317;DP=62;MQRankSum=0.000;QUALapprox=2344;RAW_GT_COUNT=0,0,1;RAW_MQandDP=222625,62;ReadPosRankSum=-1.464;VarDP=58 GT:AD:DP:GQ:PL:SB 1:1,57,0:58:99:2344,0,2381:0,1,32,25 +chrX 2405919 . A . . END=2406442 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,174 +chrX 2406443 . GT G, 1372.01 . AS_QUALapprox=|1382|0;AS_VarDP=0|49|0;DP=58;QUALapprox=1382;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=49 GT:AD:DP:GQ:PL:SB 1:0,49,0:49:99:1382,0,1382:0,0,25,24 +chrX 2406445 . T . . END=2406645 GT:DP:GQ:MIN_DP:PL 0:46:99:46:0,1240 +chrX 2406646 . A G, 1498.04 . AS_QUALapprox=|1508|0;AS_VarDP=0|47|0;DP=48;QUALapprox=1508;RAW_GT_COUNT=0,0,1;RAW_MQandDP=167941,48;VarDP=47 GT:AD:DP:GQ:PL:SB 1:0,47,0:47:99:1508,0,1508:0,0,26,21 +chrX 2406647 . G . . END=2406683 GT:DP:GQ:MIN_DP:PL 0:43:99:43:0,1269 +chrX 2406684 . A G, 1474.04 . AS_QUALapprox=|1484|0;AS_VarDP=0|46|0;DP=48;QUALapprox=1484;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=46 GT:AD:DP:GQ:PL:SB 1:0,46,0:46:99:1484,0,1484:0,0,23,23 +chrX 2406685 . C . . END=2407038 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,1349 +chrX 2407039 . C G, 2033.04 . AS_QUALapprox=|2043|0;AS_VarDP=0|60|0;DP=63;QUALapprox=2043;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:2043,0,2043:0,0,28,32 +chrX 2407040 . A . . END=2408169 GT:DP:GQ:MIN_DP:PL 0:59:90:59:0,90 +chrX 2408170 . G T, 85.04 . AS_QUALapprox=|95|0;AS_VarDP=25|27|0;BaseQRankSum=0.558;DP=54;MQRankSum=0.000;QUALapprox=95;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;ReadPosRankSum=-0.101;VarDP=52 GT:AD:DP:GQ:PL:SB 1:25,27,0:52:95:95,0,898:17,8,12,15 +chrX 2408171 . A . . END=2408700 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1150 +chrX 2408701 . G . . END=2408701 GT:DP:GQ:MIN_DP:PL 0:79:13:79:0,13 +chrX 2408702 . A . . END=2408875 GT:DP:GQ:MIN_DP:PL 0:75:99:75:0,1800 +chrX 2408876 . C CA, 291.01 . AS_QUALapprox=|301|0;AS_VarDP=24|36|0;BaseQRankSum=-0.347;DP=71;MQRankSum=0.000;QUALapprox=301;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;ReadPosRankSum=-0.430;VarDP=60 GT:AD:DP:GQ:PL:SB 1:24,36,0:60:99:301,0,971:14,10,18,18 +chrX 2408877 . A . . END=2409919 GT:DP:GQ:MIN_DP:PL 0:74:99:74:0,403 +chrX 2409920 . G C, 328.04 . AS_QUALapprox=|338|0;AS_VarDP=18|30|0;BaseQRankSum=-1.788;DP=50;MQRankSum=0.000;QUALapprox=338;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;ReadPosRankSum=0.128;VarDP=48 GT:AD:DP:GQ:PL:SB 1:18,30,0:48:99:338,0,962:9,9,16,14 +chrX 2409921 . G . . END=2410734 GT:DP:GQ:MIN_DP:PL 0:56:50:50:0,50 +chrX 2410735 . A G, 2254.04 . AS_QUALapprox=|2264|0;AS_VarDP=0|69|0;DP=74;QUALapprox=2264;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,69,0:69:99:2264,0,2264:0,0,40,29 +chrX 2410736 . A . . END=2411288 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,289 +chrX 2411289 . A . . END=2411289 GT:DP:GQ:MIN_DP:PL 0:61:1:61:0,1 +chrX 2411290 . T . . END=2411316 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1617 +chrX 2411317 . G A, 50.04 . AS_QUALapprox=|60|0;AS_VarDP=25|26|0;BaseQRankSum=1.703;DP=52;MQRankSum=0.000;QUALapprox=60;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;ReadPosRankSum=1.084;VarDP=51 GT:AD:DP:GQ:PL:SB 1:25,26,0:51:60:60,0,879:10,15,11,15 +chrX 2411318 . A . . END=2411682 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,973 +chrX 2411683 . C T, 156.04 . AS_QUALapprox=|166|0;AS_VarDP=26|28|0;BaseQRankSum=0.763;DP=55;MQRankSum=-0.927;QUALapprox=166;RAW_GT_COUNT=0,0,1;RAW_MQandDP=197425,55;ReadPosRankSum=-0.113;VarDP=54 GT:AD:DP:GQ:PL:SB 1:26,28,0:54:99:166,0,918:13,13,16,12 +chrX 2411684 . G . . END=2411751 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1588 +chrX 2411752 . C CA, 352.01 . AS_QUALapprox=|362|0;AS_VarDP=21|34|0;BaseQRankSum=-0.901;DP=58;MQRankSum=-0.748;QUALapprox=362;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208225,58;ReadPosRankSum=-0.355;VarDP=55 GT:AD:DP:GQ:PL:SB 1:21,34,0:55:99:362,0,965:12,9,14,20 +chrX 2411753 . A . . END=2412083 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1727 +chrX 2412084 . A . . END=2412084 GT:DP:GQ:MIN_DP:PL 0:67:2:67:0,2 +chrX 2412085 . T . . END=2412251 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1746 +chrX 2412252 . A T, 1813.04 . AS_QUALapprox=|1823|0;AS_VarDP=0|53|0;DP=56;QUALapprox=1823;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=53 GT:AD:DP:GQ:PL:SB 1:0,53,0:53:99:1823,0,1823:0,0,26,27 +chrX 2412253 . T . . END=2412372 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1717 +chrX 2412373 . T C, 1820.04 . AS_QUALapprox=|1830|0;AS_VarDP=0|60|0;DP=63;QUALapprox=1830;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:1830,0,1830:0,0,29,31 +chrX 2412374 . G . . END=2413055 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1151 +chrX 2413056 . A G, 1281.04 . AS_QUALapprox=|1291|0;AS_VarDP=0|38|0;DP=40;QUALapprox=1291;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140418,40;VarDP=38 GT:AD:DP:GQ:PL:SB 1:0,38,0:38:99:1291,0,1291:0,0,21,17 +chrX 2413057 . C . . END=2413150 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,1330 +chrX 2413151 . C . . END=2413151 GT:DP:GQ:MIN_DP:PL 0:50:0:50:0,0 +chrX 2413152 . G . . END=2413165 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,1544 +chrX 2413166 . G . . END=2413166 GT:DP:GQ:MIN_DP:PL 0:53:0:53:0,0 +chrX 2413167 . C . . END=2413349 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1652 +chrX 2413350 . C CT, 2318.01 . AS_QUALapprox=|2328|0;AS_VarDP=0|63|0;DP=65;QUALapprox=2328;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,63,0:63:99:2328,0,2328:0,0,34,29 +chrX 2413351 . T . . END=2413707 GT:DP:GQ:MIN_DP:PL 0:74:99:74:0,1800 +chrX 2413708 . G C, 95.04 . AS_QUALapprox=|105|0;AS_VarDP=32|35|0;BaseQRankSum=0.180;DP=67;MQRankSum=0.000;QUALapprox=105;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;ReadPosRankSum=0.797;VarDP=67 GT:AD:DP:GQ:PL:SB 1:32,35,0:67:99:105,0,1156:15,17,17,18 +chrX 2413709 . A . . END=2413796 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1800 +chrX 2413797 . T C, 1960.04 . AS_QUALapprox=|1970|0;AS_VarDP=0|61|0;DP=64;QUALapprox=1970;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,61,0:61:99:1970,0,1970:0,0,34,27 +chrX 2413798 . A . . END=2414691 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,501 +chrX 2414692 . T C, 44.04 . AS_QUALapprox=|54|0;AS_VarDP=21|24|0;BaseQRankSum=-2.173;DP=47;MQRankSum=0.000;QUALapprox=54;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;ReadPosRankSum=-1.331;VarDP=45 GT:AD:DP:GQ:PL:SB 1:21,24,0:45:54:54,0,784:11,10,15,9 +chrX 2414693 . G . . END=2415061 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1383 +chrX 2415062 . T C, 1622.04 . AS_QUALapprox=|1632|0;AS_VarDP=0|50|0;DP=51;QUALapprox=1632;RAW_GT_COUNT=0,0,1;RAW_MQandDP=181089,51;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,50,0:50:99:1632,0,1632:0,0,20,30 +chrX 2415063 . A . . END=2416891 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,973 +chrX 2416892 . T TA, 2165.01 . AS_QUALapprox=|2175|0;AS_VarDP=0|55|0;DP=58;QUALapprox=2175;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:2175,0,2175:0,0,28,27 +chrX 2416893 . T . . END=2416941 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1610 +chrX 2416942 . T C, 122.04 . AS_QUALapprox=|132|0;AS_VarDP=25|33|0;BaseQRankSum=-2.515;DP=58;MQRankSum=0.000;QUALapprox=132;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;ReadPosRankSum=0.440;VarDP=58 GT:AD:DP:GQ:PL:SB 1:25,33,0:58:99:132,0,981:16,9,17,16 +chrX 2416943 . A . . END=2417145 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1687 +chrX 2417146 . G A, 1919.04 . AS_QUALapprox=|1929|0;AS_VarDP=0|60|0;DP=62;QUALapprox=1929;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:1929,0,1929:0,0,28,32 +chrX 2417147 . G . . END=2417281 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1800 +chrX 2417282 . A C, 2206.04 . AS_QUALapprox=|2216|0;AS_VarDP=0|69|0;DP=70;QUALapprox=2216;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,69,0:69:99:2216,0,2216:0,0,33,36 +chrX 2417283 . A . . END=2417330 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1800 +chrX 2417331 . G T, 63.04 . AS_QUALapprox=|73|0;AS_VarDP=33|33|0;BaseQRankSum=1.173;DP=67;MQRankSum=0.000;QUALapprox=73;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;ReadPosRankSum=1.931;VarDP=66 GT:AD:DP:GQ:PL:SB 1:33,33,0:66:73:73,0,1115:15,18,19,14 +chrX 2417332 . T . . END=2417461 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1800 +chrX 2417462 . G A, 1923.04 . AS_QUALapprox=|1933|0;AS_VarDP=0|60|0;DP=63;QUALapprox=1933;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:1933,0,1933:0,0,36,24 +chrX 2417463 . G . . END=2418327 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,313 +chrX 2418328 . G A, 1448.04 . AS_QUALapprox=|1458|0;AS_VarDP=0|46|0;DP=46;QUALapprox=1458;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;VarDP=46 GT:AD:DP:GQ:PL:SB 1:0,46,0:46:99:1458,0,1458:0,0,27,19 +chrX 2418329 . A . . END=2418920 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1488 +chrX 2418921 . AC A, 3023.01 . AS_QUALapprox=|3033|0;AS_VarDP=0|69|0;DP=71;QUALapprox=3033;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,69,0:69:99:3033,0,3033:0,0,38,31 +chrX 2418923 . C A, 3023.04 . AS_QUALapprox=|3033|0;AS_VarDP=0|69|0;DP=71;QUALapprox=3033;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,69,0:69:99:3033,0,3033:0,0,38,31 +chrX 2418924 . C . . END=2419891 GT:DP:GQ:MIN_DP:PL 0:64:40:59:0,40 +chrX 2419892 . A G, 1775.04 . AS_QUALapprox=|1785|0;AS_VarDP=0|57|0;DP=58;QUALapprox=1785;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162235,58;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:1785,0,1785:0,0,28,29 +chrX 2419893 . C . . END=2420150 GT:DP:GQ:MIN_DP:PL 0:77:99:77:0,1765 +chrX 2420151 . G C, 2472.04 . AS_QUALapprox=|2482|0;AS_VarDP=0|74|0;DP=76;QUALapprox=2482;RAW_GT_COUNT=0,0,1;RAW_MQandDP=270450,76;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,74,0:74:99:2482,0,2482:0,0,42,32 +chrX 2420152 . T . . END=2420810 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1564 +chrX 2420811 . T G, 1975.04 . AS_QUALapprox=|1985|0;AS_VarDP=0|61|0;DP=61;QUALapprox=1985;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219025,61;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,61,0:61:99:1985,0,1985:0,0,30,31 +chrX 2420812 . A . . END=2420854 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1775 +chrX 2420855 . G A, 297.04 . AS_QUALapprox=|307|0;AS_VarDP=26|35|0;BaseQRankSum=0.032;DP=65;MQRankSum=0.000;QUALapprox=307;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;ReadPosRankSum=-0.306;VarDP=61 GT:AD:DP:GQ:PL:SB 1:26,35,0:61:99:307,0,1130:11,15,20,15 +chrX 2420856 . C . . END=2421061 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1629 +chrX 2421062 . T C, 269.04 . AS_QUALapprox=|279|0;AS_VarDP=25|32|0;BaseQRankSum=1.182;DP=60;MQRankSum=0.000;QUALapprox=279;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;ReadPosRankSum=1.448;VarDP=57 GT:AD:DP:GQ:PL:SB 1:25,32,0:57:99:279,0,1072:13,12,20,12 +chrX 2421063 . G . . END=2421075 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1800 +chrX 2421076 . C G, 2040.04 . AS_QUALapprox=|2050|0;AS_VarDP=0|61|0;DP=65;QUALapprox=2050;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,61,0:61:99:2050,0,2050:0,0,35,26 +chrX 2421077 . A . . END=2421649 GT:DP:GQ:MIN_DP:PL 0:78:99:78:0,1800 +chrX 2421650 . A G, 2490.04 . AS_QUALapprox=|2500|0;AS_VarDP=0|76|0;DP=78;QUALapprox=2500;RAW_GT_COUNT=0,0,1;RAW_MQandDP=280800,78;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,76,0:76:99:2500,0,2500:0,0,33,43 +chrX 2421651 . A . . END=2421768 GT:DP:GQ:MIN_DP:PL 0:75:99:75:0,1800 +chrX 2421769 . C T, 2235.04 . AS_QUALapprox=|2245|0;AS_VarDP=0|73|0;DP=78;QUALapprox=2245;RAW_GT_COUNT=0,0,1;RAW_MQandDP=280800,78;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,73,0:73:99:2245,0,2245:0,0,37,36 +chrX 2421770 . G . . END=2421910 GT:DP:GQ:MIN_DP:PL 0:74:99:74:0,1800 +chrX 2421911 . G C, 2452.04 . AS_QUALapprox=|2462|0;AS_VarDP=0|72|0;DP=75;QUALapprox=2462;RAW_GT_COUNT=0,0,1;RAW_MQandDP=270000,75;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,72,0:72:99:2462,0,2462:0,0,45,27 +chrX 2421912 . T . . END=2421961 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1800 +chrX 2421962 . C T, 2466.04 . AS_QUALapprox=|2476|0;AS_VarDP=0|74|0;DP=75;QUALapprox=2476;RAW_GT_COUNT=0,0,1;RAW_MQandDP=270000,75;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,74,0:74:99:2476,0,2476:0,0,46,28 +chrX 2421963 . C . . END=2422177 GT:DP:GQ:MIN_DP:PL 0:75:99:75:0,1800 +chrX 2422178 . A G, 1975.04 . AS_QUALapprox=|1985|0;AS_VarDP=0|61|0;DP=61;QUALapprox=1985;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,61,0:61:99:1985,0,1985:0,0,24,37 +chrX 2422179 . T . . END=2422379 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1728 +chrX 2422380 . A G, 1870.04 . AS_QUALapprox=|1880|0;AS_VarDP=0|58|0;DP=59;QUALapprox=1880;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,58,0:58:99:1880,0,1880:0,0,28,30 +chrX 2422381 . G . . END=2423084 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1064 +chrX 2423085 . A G, 244.04 . AS_QUALapprox=|254|0;AS_VarDP=16|23|0;BaseQRankSum=0.966;DP=39;MQRankSum=-0.782;QUALapprox=254;RAW_GT_COUNT=0,0,1;RAW_MQandDP=139825,39;ReadPosRankSum=1.000;VarDP=39 GT:AD:DP:GQ:PL:SB 1:16,23,0:39:99:254,0,770:7,9,10,13 +chrX 2423086 . A . . END=2423410 GT:DP:GQ:MIN_DP:PL 0:43:99:43:0,1048 +chrX 2423411 . CA C, 1604.01 . AS_QUALapprox=|1614|0;AS_VarDP=0|53|0;DP=58;QUALapprox=1614;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=53 GT:AD:DP:GQ:PL:SB 1:0,53,0:53:99:1614,0,1614:0,0,31,22 +chrX 2423413 . A . . END=2423484 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1800 +chrX 2423485 . A G, 1906.04 . AS_QUALapprox=|1916|0;AS_VarDP=0|62|0;DP=67;QUALapprox=1916;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:1916,0,1916:0,0,41,21 +chrX 2423486 . T . . END=2423666 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1653 +chrX 2423667 . G A, 2164.04 . AS_QUALapprox=|2174|0;AS_VarDP=0|65|0;DP=71;QUALapprox=2174;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,65,0:65:99:2174,0,2174:0,0,35,30 +chrX 2423668 . T . . END=2423900 GT:DP:GQ:MIN_DP:PL 0:73:99:73:0,1653 +chrX 2423901 . C T, 1922.04 . AS_QUALapprox=|1932|0;AS_VarDP=0|50|0;DP=51;QUALapprox=1932;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,50,0:50:99:1932,0,1932:0,0,20,30 +chrX 2423902 . G . . END=2424056 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,278 +chrX 2424057 . G . . END=2424057 GT:DP:GQ:MIN_DP:PL 0:47:0:47:0,0 +chrX 2424058 . T . . END=2424520 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1455 +chrX 2424521 . T C, 1779.04 . AS_QUALapprox=|1789|0;AS_VarDP=0|53|0;DP=55;QUALapprox=1789;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=53 GT:AD:DP:GQ:PL:SB 1:0,53,0:53:99:1789,0,1789:0,0,22,31 +chrX 2424522 . T . . END=2424814 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1594 +chrX 2424815 . G A, 1871.04 . AS_QUALapprox=|1881|0;AS_VarDP=0|57|0;DP=58;QUALapprox=1881;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:1881,0,1881:0,0,30,27 +chrX 2424816 . A . . END=2425141 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1304 +chrX 2425142 . G GA, 985.01 . AS_QUALapprox=|995|0;AS_VarDP=0|39|0;DP=52;QUALapprox=995;RAW_GT_COUNT=0,0,1;RAW_MQandDP=186625,52;VarDP=39 GT:AD:DP:GQ:PL:SB 1:0,39,0:39:99:995,0,995:0,0,17,22 +chrX 2425143 . A . . END=2425171 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,1388 +chrX 2425172 . C T, 50.04 . AS_QUALapprox=|60|0;AS_VarDP=23|24|0;BaseQRankSum=0.490;DP=53;MQRankSum=-0.936;QUALapprox=60;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190225,53;ReadPosRankSum=-0.277;VarDP=47 GT:AD:DP:GQ:PL:SB 1:23,24,0:47:60:60,0,769:11,12,12,12 +chrX 2425173 . A . . END=2425412 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1701 +chrX 2425413 . T A, 2386.04 . AS_QUALapprox=|2396|0;AS_VarDP=0|71|0;DP=74;QUALapprox=2396;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,71,0:71:99:2396,0,2396:0,0,35,36 +chrX 2425414 . T . . END=2425571 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1800 +chrX 2425572 . A G, 180.04 . AS_QUALapprox=|190|0;AS_VarDP=31|39|0;BaseQRankSum=-1.709;DP=73;MQRankSum=0.000;QUALapprox=190;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;ReadPosRankSum=-0.018;VarDP=70 GT:AD:DP:GQ:PL:SB 1:31,39,0:70:99:190,0,1238:12,19,19,20 +chrX 2425573 . G . . END=2428452 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,709 +chrX 2428453 . G A, 84.04 . AS_QUALapprox=|94|0;AS_VarDP=25|28|0;BaseQRankSum=-0.228;DP=57;MQRankSum=-1.318;QUALapprox=94;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198583,57;ReadPosRankSum=0.250;VarDP=53 GT:AD:DP:GQ:PL:SB 1:25,28,0:53:94:94,0,931:13,12,18,10 +chrX 2428454 . G . . END=2429046 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1469 +chrX 2429047 . G A, 110.04 . AS_QUALapprox=|120|0;AS_VarDP=24|28|0;BaseQRankSum=-0.154;DP=54;MQRankSum=0.000;QUALapprox=120;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;ReadPosRankSum=-1.185;VarDP=52 GT:AD:DP:GQ:PL:SB 1:24,28,0:52:99:120,0,907:13,11,12,16 +chrX 2429048 . G . . END=2430257 GT:DP:GQ:MIN_DP:PL 0:58:55:55:0,55 +chrX 2430258 . C CA, 55.01 . AS_QUALapprox=|65|0;AS_VarDP=19|24|0;BaseQRankSum=-0.676;DP=67;MQRankSum=0.168;QUALapprox=65;RAW_GT_COUNT=0,0,1;RAW_MQandDP=238500,67;ReadPosRankSum=-0.883;VarDP=43 GT:AD:DP:GQ:PL:SB 1:19,24,0:43:65:65,0,528:11,8,9,15 +chrX 2430259 . A . . END=2431801 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,115 +chrX 2431802 . G A, 387.04 . AS_QUALapprox=|397|0;AS_VarDP=21|32|0;BaseQRankSum=1.866;DP=53;MQRankSum=0.000;QUALapprox=397;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;ReadPosRankSum=0.000;VarDP=53 GT:AD:DP:GQ:PL:SB 1:21,32,0:53:99:397,0,1087:14,7,19,13 +chrX 2431803 . T . . END=2436002 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,326 +chrX 2436003 . A G, 1840.04 . AS_QUALapprox=|1850|0;AS_VarDP=0|55|0;DP=58;QUALapprox=1850;RAW_GT_COUNT=0,0,1;RAW_MQandDP=207874,58;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:1850,0,1850:0,0,25,30 +chrX 2436004 . T . . END=2436460 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1542 +chrX 2436461 . A ATATTAT,ATATTATTAT, 121.01 . AS_QUALapprox=|131|0|0;AS_VarDP=22|19|0|0;BaseQRankSum=0.052;DP=66;MQRankSum=0.000;QUALapprox=131;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;ReadPosRankSum=-2.029;VarDP=41 GT:AD:DP:GQ:PL:SB 1:22,19,0,0:41:99:131,0,828,971:14,8,8,11 +chrX 2436462 . T . . END=2436488 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,855 +chrX 2436489 . T . . END=2436499 GT:DP:GQ:MIN_DP:PL 0:56:0:56:0,0 +chrX 2436500 . C T, 120.04 . AS_QUALapprox=|1092|0;AS_VarDP=0|28|0;DP=56;QUALapprox=1092;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:1092,0,1086:0,0,8,11 +chrX 2436501 . T . . END=2436702 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1606 +chrX 2436703 . T C, 1856.04 . AS_QUALapprox=|1866|0;AS_VarDP=0|57|0;DP=59;QUALapprox=1866;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:1866,0,1866:0,0,28,29 +chrX 2436704 . T . . END=2437134 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1800 +chrX 2437135 . T C, 2461.04 . AS_QUALapprox=|2471|0;AS_VarDP=0|77|0;DP=79;QUALapprox=2471;RAW_GT_COUNT=0,0,1;RAW_MQandDP=279697,79;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,77,0:77:99:2471,0,2471:0,0,39,38 +chrX 2437136 . T . . END=2437288 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1800 +chrX 2437289 . A G, 1867.04 . AS_QUALapprox=|1877|0;AS_VarDP=2|58|0;BaseQRankSum=3.041;DP=62;MQRankSum=-0.199;QUALapprox=1877;RAW_GT_COUNT=0,0,1;RAW_MQandDP=222050,62;ReadPosRankSum=-0.618;VarDP=60 GT:AD:DP:GQ:PL:SB 1:2,58,0:60:99:1877,0,1926:1,1,24,34 +chrX 2437290 . T . . END=2437618 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1384 +chrX 2437619 . AG A, 1636.01 . AS_QUALapprox=|1646|0;AS_VarDP=0|45|0;DP=46;QUALapprox=1646;RAW_GT_COUNT=0,0,1;RAW_MQandDP=164704,46;VarDP=45 GT:AD:DP:GQ:PL:SB 1:0,45,0:45:99:1646,0,1646:0,0,21,24 +chrX 2437621 . A . . END=2437697 GT:DP:GQ:MIN_DP:PL 0:43:99:43:0,1256 +chrX 2437698 . AGTGTGTGTGTGTGTGT A, 1596.01 . AS_QUALapprox=|1606|0;AS_VarDP=1|37|0;BaseQRankSum=-0.311;DP=52;MQRankSum=-0.118;QUALapprox=1606;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180608,52;ReadPosRankSum=-1.597;VarDP=38 GT:AD:DP:GQ:PL:SB 1:1,37,0:38:99:1606,0,1637:1,0,15,22 +chrX 2437715 . G . . END=2438007 GT:DP:GQ:MIN_DP:PL 0:47:99:47:0,943 +chrX 2438008 . G GAA, 1385.01 . AS_QUALapprox=|1395|0;AS_VarDP=0|39|0;DP=48;QUALapprox=1395;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=39 GT:AD:DP:GQ:PL:SB 1:0,39,0:39:99:1395,0,1396:0,0,26,13 +chrX 2438009 . A . . END=2438177 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1477 +chrX 2438178 . GA G, 858.01 . AS_QUALapprox=|868|0;AS_VarDP=1|37|0;DP=54;MQRankSum=0.000;QUALapprox=868;RAW_GT_COUNT=0,0,1;RAW_MQandDP=191717,54;VarDP=38 GT:AD:DP:GQ:PL:SB 1:1,37,0:38:99:868,0,892:0,1,16,21 +chrX 2438180 . A . . END=2438305 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,1097 +chrX 2438306 . T TACACACAC, 1913.01 . AS_QUALapprox=|1923|0;AS_VarDP=0|44|0;DP=50;QUALapprox=1923;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=44 GT:AD:DP:GQ:PL:SB 1:0,44,0:44:99:1923,0,1924:0,0,22,22 +chrX 2438307 . A . . END=2438445 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1237 +chrX 2438446 . T G, 2013.04 . AS_QUALapprox=|2023|0;AS_VarDP=0|65|0;DP=68;QUALapprox=2023;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241697,68;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,65,0:65:99:2023,0,2023:0,0,37,28 +chrX 2438447 . G . . END=2438671 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1499 +chrX 2438672 . T TAA, 1687.01 . AS_QUALapprox=|1697|0;AS_VarDP=0|52|0;DP=70;QUALapprox=1697;RAW_GT_COUNT=0,0,1;RAW_MQandDP=249425,70;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:1697,0,1698:0,0,37,15 +chrX 2438673 . A . . END=2438972 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1337 +chrX 2438973 . T C, 1765.04 . AS_QUALapprox=|1775|0;AS_VarDP=0|56|0;DP=61;QUALapprox=1775;RAW_GT_COUNT=0,0,1;RAW_MQandDP=218450,61;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,56,0:56:99:1775,0,1775:0,0,27,29 +chrX 2438974 . G . . END=2439515 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1410 +chrX 2439516 . G A, 1852.04 . AS_QUALapprox=|1862|0;AS_VarDP=0|61|0;DP=63;QUALapprox=1862;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,61,0:61:99:1862,0,1862:0,0,23,38 +chrX 2439517 . A . . END=2439877 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1497 +chrX 2439878 . G T, 2069.04 . AS_QUALapprox=|2079|0;AS_VarDP=0|64|0;DP=66;QUALapprox=2079;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,64,0:64:99:2079,0,2079:0,0,33,31 +chrX 2439879 . C . . END=2440098 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1800 +chrX 2440099 . T A, 1996.04 . AS_QUALapprox=|2006|0;AS_VarDP=0|61|0;DP=62;QUALapprox=2006;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,61,0:61:99:2006,0,2006:0,0,21,40 +chrX 2440100 . G . . END=2442047 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1551 +chrX 2442048 . T C, 2346.04 . AS_QUALapprox=|2356|0;AS_VarDP=1|75|0;BaseQRankSum=-0.566;DP=79;MQRankSum=0.000;QUALapprox=2356;RAW_GT_COUNT=0,0,1;RAW_MQandDP=283825,79;ReadPosRankSum=-0.410;VarDP=76 GT:AD:DP:GQ:PL:SB 1:1,75,0:76:99:2356,0,2391:0,1,33,42 +chrX 2442049 . G . . END=2442259 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1732 +chrX 2442260 . T C, 1712.04 . AS_QUALapprox=|1722|0;AS_VarDP=0|53|0;DP=56;QUALapprox=1722;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=53 GT:AD:DP:GQ:PL:SB 1:0,53,0:53:99:1722,0,1722:0,0,36,17 +chrX 2442261 . G . . END=2442699 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1394 +chrX 2442700 . A G, 1647.04 . AS_QUALapprox=|1657|0;AS_VarDP=0|51|0;DP=54;QUALapprox=1657;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=51 GT:AD:DP:GQ:PL:SB 1:0,51,0:51:99:1657,0,1657:0,0,19,32 +chrX 2442701 . T . . END=2444457 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1033 +chrX 2444458 . T C, 2084.04 . AS_QUALapprox=|2094|0;AS_VarDP=0|64|0;DP=66;QUALapprox=2094;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,64,0:64:99:2094,0,2094:0,0,34,30 +chrX 2444459 . G . . END=2447558 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,252 +chrX 2447559 . C T, 2163.04 . AS_QUALapprox=|2173|0;AS_VarDP=0|66|0;DP=69;QUALapprox=2173;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=66 GT:AD:DP:GQ:PL:SB 1:0,66,0:66:99:2173,0,2173:0,0,30,36 +chrX 2447560 . C . . END=2447682 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1490 +chrX 2447683 . G A, 1421.04 . AS_QUALapprox=|1431|0;AS_VarDP=0|43|0;DP=44;QUALapprox=1431;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129448,44;VarDP=43 GT:AD:DP:GQ:PL:SB 1:0,43,0:43:99:1431,0,1431:0,0,15,28 +chrX 2447684 . T . . END=2447727 GT:DP:GQ:MIN_DP:PL 0:38:99:38:0,755 +chrX 2447728 . A G, 737.04 . AS_QUALapprox=|747|0;AS_VarDP=0|21|0;DP=22;QUALapprox=747;RAW_GT_COUNT=0,0,1;RAW_MQandDP=51832,22;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:747,0,747:0,0,6,15 +chrX 2447729 . C . . END=2447748 GT:DP:GQ:MIN_DP:PL 0:16:99:16:0,417 +chrX 2447749 . A G, 458.04 . AS_QUALapprox=|468|0;AS_VarDP=0|13|0;DP=14;QUALapprox=468;RAW_GT_COUNT=0,0,1;RAW_MQandDP=24606,14;VarDP=13 GT:AD:DP:GQ:PL:SB 1:0,13,0:13:99:468,0,468:0,0,3,10 +chrX 2447750 . A . . END=2447768 GT:DP:GQ:MIN_DP:PL 0:11:99:11:0,174 +chrX 2447769 . A G, 219.04 . AS_QUALapprox=|229|0;AS_VarDP=0|6|0;DP=6;QUALapprox=229;RAW_GT_COUNT=0,0,1;RAW_MQandDP=9600,6;VarDP=6 GT:AD:DP:GQ:PL:SB 1:0,6,0:6:99:229,0,229:0,0,2,4 +chrX 2447770 . A . . END=2447773 GT:DP:GQ:MIN_DP:PL 0:6:45:6:0,45 +chrX 2447774 . A . . END=2447786 GT:DP:GQ:MIN_DP:PL 0:3:0:3:0,0 +chrX 2447787 . A C, 75.04 . AS_QUALapprox=|85|0;AS_VarDP=0|2|0;DP=2;QUALapprox=85;RAW_GT_COUNT=0,0,1;RAW_MQandDP=3200,2;VarDP=2 GT:AD:DP:GQ:PL:SB 1:0,2,0:2:85:85,0,85:0,0,0,2 +chrX 2447788 . T A, 75.04 . AS_QUALapprox=|85|0;AS_VarDP=0|2|0;DP=2;QUALapprox=85;RAW_GT_COUNT=0,0,1;RAW_MQandDP=3200,2;VarDP=2 GT:AD:DP:GQ:PL:SB 1:0,2,0:2:85:85,0,85:0,0,0,2 +chrX 2447789 . A . . END=2447792 GT:DP:GQ:MIN_DP:PL 0:3:0:3:0,0 +chrX 2447793 . T . . END=2447834 GT:DP:GQ:MIN_DP:PL 0:3:35:1:0,35 +chrX 2447835 . A C, 271.04 . AS_QUALapprox=|281|0;AS_VarDP=0|9|0;DP=10;QUALapprox=281;RAW_GT_COUNT=0,0,1;RAW_MQandDP=10791,10;VarDP=9 GT:AD:DP:GQ:PL:SB 1:0,9,0:9:99:281,0,281:0,0,5,4 +chrX 2447836 . G . . END=2447870 GT:DP:GQ:MIN_DP:PL 0:11:99:11:0,303 +chrX 2447871 . CTTCA C, 645.01 . AS_QUALapprox=|655|0;AS_VarDP=0|15|0;DP=15;QUALapprox=655;RAW_GT_COUNT=0,0,1;RAW_MQandDP=24271,15;VarDP=15 GT:AD:DP:GQ:PL:SB 1:0,15,0:15:99:655,0,655:0,0,10,5 +chrX 2447876 . T . . END=2447877 GT:DP:GQ:MIN_DP:PL 0:14:99:14:0,452 +chrX 2447878 . A G, 645.04 . AS_QUALapprox=|655|0;AS_VarDP=0|15|0;DP=16;QUALapprox=655;RAW_GT_COUNT=0,0,1;RAW_MQandDP=27871,16;VarDP=15 GT:AD:DP:GQ:PL:SB 1:0,15,0:15:99:655,0,655:0,0,10,5 +chrX 2447879 . A . . END=2447929 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,530 +chrX 2447930 . T C, 1385.04 . AS_QUALapprox=|1395|0;AS_VarDP=1|32|0;BaseQRankSum=-0.283;DP=33;MQRankSum=-0.984;QUALapprox=1395;RAW_GT_COUNT=0,0,1;RAW_MQandDP=81287,33;ReadPosRankSum=1.736;VarDP=33 GT:AD:DP:GQ:PL:SB 1:1,32,0:33:99:1395,0,1440:1,0,19,13 +chrX 2447931 . A . . END=2447934 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,1043 +chrX 2447935 . C G, 1385.04 . AS_QUALapprox=|1395|0;AS_VarDP=1|32|0;BaseQRankSum=-0.211;DP=33;MQRankSum=-0.984;QUALapprox=1395;RAW_GT_COUNT=0,0,1;RAW_MQandDP=81287,33;ReadPosRankSum=1.734;VarDP=33 GT:AD:DP:GQ:PL:SB 1:1,32,0:33:99:1395,0,1440:1,0,19,13 +chrX 2447936 . C . . END=2447944 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,1022 +chrX 2447945 . A T, 1520.04 . AS_QUALapprox=|1530|0;AS_VarDP=1|35|0;BaseQRankSum=-0.121;DP=37;MQRankSum=-0.875;QUALapprox=1530;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97687,37;ReadPosRankSum=1.397;VarDP=36 GT:AD:DP:GQ:PL:SB 1:1,35,0:36:99:1530,0,1575:1,0,21,14 +chrX 2447946 . A G, 1520.04 . AS_QUALapprox=|1530|0;AS_VarDP=1|35|0;BaseQRankSum=-0.201;DP=38;MQRankSum=-0.875;QUALapprox=1530;RAW_GT_COUNT=0,0,1;RAW_MQandDP=101287,38;ReadPosRankSum=1.348;VarDP=36 GT:AD:DP:GQ:PL:SB 1:1,35,0:36:99:1530,0,1575:1,0,21,14 +chrX 2447947 . T . . END=2448072 GT:DP:GQ:MIN_DP:PL 0:38:60:37:0,60 +chrX 2448073 . T G, 1113.04 . AS_QUALapprox=|1123|0;AS_VarDP=0|35|0;DP=36;QUALapprox=1123;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104628,36;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,35,0:35:99:1123,0,1123:0,0,21,14 +chrX 2448074 . G . . END=2448117 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,952 +chrX 2448118 . A G, 866.04 . AS_QUALapprox=|876|0;AS_VarDP=1|30|0;BaseQRankSum=-0.617;DP=31;MQRankSum=-0.797;QUALapprox=876;RAW_GT_COUNT=0,0,1;RAW_MQandDP=80692,31;ReadPosRankSum=0.840;VarDP=31 GT:AD:DP:GQ:PL:SB 1:1,30,0:31:99:876,0,910:0,1,20,10 +chrX 2448119 . C . . END=2448154 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,839 +chrX 2448155 . T C, 1529.04 . AS_QUALapprox=|1539|0;AS_VarDP=1|37|0;BaseQRankSum=-0.406;DP=39;MQRankSum=-0.918;QUALapprox=1539;RAW_GT_COUNT=0,0,1;RAW_MQandDP=106161,39;ReadPosRankSum=-1.643;VarDP=38 GT:AD:DP:GQ:PL:SB 1:1,37,0:38:99:1539,0,1584:0,1,28,9 +chrX 2448156 . A . . END=2448162 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,1117 +chrX 2448163 . T C, 1569.04 . AS_QUALapprox=|1579|0;AS_VarDP=1|37|0;BaseQRankSum=4.185;DP=39;MQRankSum=-0.958;QUALapprox=1579;RAW_GT_COUNT=0,0,1;RAW_MQandDP=105586,39;ReadPosRankSum=-1.635;VarDP=38 GT:AD:DP:GQ:PL:SB 1:1,37,0:38:99:1579,0,1624:0,1,28,9 +chrX 2448164 . C . . END=2448166 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,1117 +chrX 2448167 . A ATC, 1430.01 . AS_QUALapprox=|1440|0;AS_VarDP=1|33|0;BaseQRankSum=0.000;DP=35;MQRankSum=-1.052;QUALapprox=1440;RAW_GT_COUNT=0,0,1;RAW_MQandDP=91186,35;ReadPosRankSum=-1.630;VarDP=34 GT:AD:DP:GQ:PL:SB 1:1,33,0:34:99:1440,0,1485:0,1,26,7 +chrX 2448168 . T . . END=2448171 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,1019 +chrX 2448172 . CAT C, 1374.01 . AS_QUALapprox=|1384|0;AS_VarDP=1|32|0;BaseQRankSum=-0.129;DP=36;MQRankSum=-1.033;QUALapprox=1384;RAW_GT_COUNT=0,0,1;RAW_MQandDP=96537,36;ReadPosRankSum=-1.410;VarDP=33 GT:AD:DP:GQ:PL:SB 1:1,32,0:33:99:1384,0,1429:0,1,25,7 +chrX 2448175 . A . . END=2448371 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,407 +chrX 2448372 . C G, 3383.04 . AS_QUALapprox=|3393|0;AS_VarDP=0|77|0;DP=78;QUALapprox=3393;RAW_GT_COUNT=0,0,1;RAW_MQandDP=269648,78;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,77,0:77:99:3393,0,3393:0,0,34,43 +chrX 2448373 . A . . END=2448375 GT:DP:GQ:MIN_DP:PL 0:76:99:76:0,1800 +chrX 2448376 . A G, 3417.04 . AS_QUALapprox=|3427|0;AS_VarDP=0|78|0;DP=82;QUALapprox=3427;RAW_GT_COUNT=0,0,1;RAW_MQandDP=283459,82;VarDP=78 GT:AD:DP:GQ:PL:SB 1:0,78,0:78:99:3427,0,3427:0,0,35,43 +chrX 2448377 . A . . END=2448393 GT:DP:GQ:MIN_DP:PL 0:76:99:76:0,1800 +chrX 2448394 . A T, 2450.04 . AS_QUALapprox=|2460|0;AS_VarDP=0|76|0;DP=77;QUALapprox=2460;RAW_GT_COUNT=0,0,1;RAW_MQandDP=261309,77;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,76,0:76:99:2460,0,2460:0,0,33,43 +chrX 2448395 . T . . END=2448413 GT:DP:GQ:MIN_DP:PL 0:73:99:73:0,1800 +chrX 2448414 . C G, 2289.04 . AS_QUALapprox=|2299|0;AS_VarDP=0|72|0;DP=74;QUALapprox=2299;RAW_GT_COUNT=0,0,1;RAW_MQandDP=236336,74;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,72,0:72:99:2299,0,2299:0,0,30,42 +chrX 2448415 . A . . END=2448466 GT:DP:GQ:MIN_DP:PL 0:73:99:73:0,1777 +chrX 2448467 . A G, 2278.04 . AS_QUALapprox=|2288|0;AS_VarDP=0|52|0;DP=55;QUALapprox=2288;RAW_GT_COUNT=0,0,1;RAW_MQandDP=157601,55;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:2288,0,2288:0,0,22,30 +chrX 2448468 . T . . END=2448471 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,1603 +chrX 2448472 . G C, 2185.04 . AS_QUALapprox=|2195|0;AS_VarDP=0|49|0;DP=50;QUALapprox=2195;RAW_GT_COUNT=0,0,1;RAW_MQandDP=142035,50;VarDP=49 GT:AD:DP:GQ:PL:SB 1:0,49,0:49:99:2195,0,2195:0,0,20,29 +chrX 2448473 . A . . END=2448505 GT:DP:GQ:MIN_DP:PL 0:41:99:41:0,1196 +chrX 2448506 . T C, 1654.04 . AS_QUALapprox=|1664|0;AS_VarDP=0|38|0;DP=39;QUALapprox=1664;RAW_GT_COUNT=0,0,1;RAW_MQandDP=89471,39;VarDP=38 GT:AD:DP:GQ:PL:SB 1:0,38,0:38:99:1664,0,1664:0,0,16,22 +chrX 2448507 . A . . END=2448512 GT:DP:GQ:MIN_DP:PL 0:37:99:37:0,1201 +chrX 2448513 . AAG A, 1744.01 . AS_QUALapprox=|1754|0;AS_VarDP=0|39|0;DP=39;QUALapprox=1754;RAW_GT_COUNT=0,0,1;RAW_MQandDP=91627,39;VarDP=39 GT:AD:DP:GQ:PL:SB 1:0,39,0:39:99:1754,0,1754:0,0,17,22 +chrX 2448516 . G GAA, 1744.01 . AS_QUALapprox=|1754|0;AS_VarDP=0|39|0;DP=39;QUALapprox=1754;RAW_GT_COUNT=0,0,1;RAW_MQandDP=91627,39;VarDP=39 GT:AD:DP:GQ:PL:SB 1:0,39,0:39:99:1754,0,1754:0,0,17,22 +chrX 2448517 . T . . END=2448522 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,1125 +chrX 2448523 . G A, 1669.04 . AS_QUALapprox=|1679|0;AS_VarDP=0|38|0;DP=38;QUALapprox=1679;RAW_GT_COUNT=0,0,1;RAW_MQandDP=88027,38;VarDP=38 GT:AD:DP:GQ:PL:SB 1:0,38,0:38:99:1679,0,1679:0,0,16,22 +chrX 2448524 . A . . END=2448530 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,1062 +chrX 2448531 . T A, 1388.04 . AS_QUALapprox=|1398|0;AS_VarDP=0|33|0;DP=34;QUALapprox=1398;RAW_GT_COUNT=0,0,1;RAW_MQandDP=76680,34;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1398,0,1398:0,0,13,20 +chrX 2448532 . A . . END=2448560 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,968 +chrX 2448561 . G C, 1600.04 . AS_QUALapprox=|1610|0;AS_VarDP=0|36|0;DP=37;QUALapprox=1610;RAW_GT_COUNT=0,0,1;RAW_MQandDP=103630,37;VarDP=36 GT:AD:DP:GQ:PL:SB 1:0,36,0:36:99:1610,0,1610:0,0,16,20 +chrX 2448562 . A . . END=2448562 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,1211 +chrX 2448563 . T A, 1690.04 . AS_QUALapprox=|1700|0;AS_VarDP=0|38|0;DP=38;QUALapprox=1700;RAW_GT_COUNT=0,0,1;RAW_MQandDP=109230,38;VarDP=38 GT:AD:DP:GQ:PL:SB 1:0,38,0:38:99:1700,0,1700:0,0,17,21 +chrX 2448564 . T . . END=2448570 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,1187 +chrX 2448571 . G A, 1610.04 . AS_QUALapprox=|1620|0;AS_VarDP=0|36|0;DP=36;QUALapprox=1620;RAW_GT_COUNT=0,0,1;RAW_MQandDP=110541,36;VarDP=36 GT:AD:DP:GQ:PL:SB 1:0,36,0:36:99:1620,0,1620:0,0,16,20 +chrX 2448572 . T . . END=2448575 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,1157 +chrX 2448576 . T A, 1642.04 . AS_QUALapprox=|1652|0;AS_VarDP=0|37|0;DP=38;QUALapprox=1652;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118596,38;VarDP=37 GT:AD:DP:GQ:PL:SB 1:0,37,0:37:99:1652,0,1652:0,0,17,20 +chrX 2448577 . A . . END=2448582 GT:DP:GQ:MIN_DP:PL 0:38:99:38:0,1221 +chrX 2448583 . T C, 1736.04 . AS_QUALapprox=|1746|0;AS_VarDP=0|40|0;DP=42;QUALapprox=1746;RAW_GT_COUNT=0,0,1;RAW_MQandDP=132996,42;VarDP=40 GT:AD:DP:GQ:PL:SB 1:0,40,0:40:99:1746,0,1746:0,0,18,22 +chrX 2448584 . T . . END=2449044 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1359 +chrX 2449045 . T C, 1950.04 . AS_QUALapprox=|1960|0;AS_VarDP=0|60|0;DP=62;QUALapprox=1960;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219566,62;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:1960,0,1960:0,0,32,28 +chrX 2449046 . G . . END=2449137 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1710 +chrX 2449138 . A G, 1856.04 . AS_QUALapprox=|1866|0;AS_VarDP=0|57|0;DP=58;QUALapprox=1866;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205741,58;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:1866,0,1866:0,0,37,20 +chrX 2449139 . A . . END=2449188 GT:DP:GQ:MIN_DP:PL 0:45:99:45:0,1245 +chrX 2449189 . CAA C, 1223.01 . AS_QUALapprox=|1233|0;AS_VarDP=0|34|0;DP=45;QUALapprox=1233;RAW_GT_COUNT=0,0,1;RAW_MQandDP=160000,45;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1233,0,1233:0,0,24,10 +chrX 2449192 . A . . END=2449217 GT:DP:GQ:MIN_DP:PL 0:42:99:42:0,1250 +chrX 2449218 . C T, 1305.04 . AS_QUALapprox=|1315|0;AS_VarDP=2|40|0;BaseQRankSum=3.933;DP=45;MQRankSum=0.000;QUALapprox=1315;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162000,45;ReadPosRankSum=0.887;VarDP=42 GT:AD:DP:GQ:PL:SB 1:2,40,0:42:99:1315,0,1334:2,0,27,13 +chrX 2449219 . A . . END=2449261 GT:DP:GQ:MIN_DP:PL 0:46:99:46:0,1320 +chrX 2449262 . A C, 1682.04 . AS_QUALapprox=|1692|0;AS_VarDP=0|52|0;DP=53;QUALapprox=1692;RAW_GT_COUNT=0,0,1;RAW_MQandDP=175363,53;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:1692,0,1692:0,0,33,19 +chrX 2449263 . T . . END=2449535 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1629 +chrX 2449536 . C T, 2338.04 . AS_QUALapprox=|2348|0;AS_VarDP=0|70|0;DP=71;QUALapprox=2348;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,70,0:70:99:2348,0,2348:0,0,44,26 +chrX 2449537 . C . . END=2449652 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1800 +chrX 2449653 . A G, 2104.04 . AS_QUALapprox=|2114|0;AS_VarDP=0|66|0;DP=69;QUALapprox=2114;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=66 GT:AD:DP:GQ:PL:SB 1:0,66,0:66:99:2114,0,2114:0,0,34,32 +chrX 2449654 . T . . END=2449733 GT:DP:GQ:MIN_DP:PL 0:78:99:78:0,1800 +chrX 2449734 . G A, 77.04 . AS_QUALapprox=|87|0;AS_VarDP=37|41|0;BaseQRankSum=-0.463;DP=81;MQRankSum=0.000;QUALapprox=87;RAW_GT_COUNT=0,0,1;RAW_MQandDP=291600,81;ReadPosRankSum=-1.912;VarDP=78 GT:AD:DP:GQ:PL:SB 1:37,41,0:78:87:87,0,1308:22,15,20,21 +chrX 2449735 . C . . END=2449990 GT:DP:GQ:MIN_DP:PL 0:83:99:83:0,1800 +chrX 2449991 . A G, 1995.04 . AS_QUALapprox=|2005|0;AS_VarDP=0|60|0;DP=61;QUALapprox=2005;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:2005,0,2005:0,0,27,33 +chrX 2449992 . A . . END=2450100 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1800 +chrX 2450101 . A G, 2395.04 . AS_QUALapprox=|2405|0;AS_VarDP=0|74|0;DP=75;QUALapprox=2405;RAW_GT_COUNT=0,0,1;RAW_MQandDP=270000,75;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,74,0:74:99:2405,0,2405:0,0,28,46 +chrX 2450102 . A . . END=2450126 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1800 +chrX 2450127 . CA C, 1717.01 . AS_QUALapprox=|1727|0;AS_VarDP=0|61|0;DP=74;QUALapprox=1727;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,61,0:61:99:1727,0,1727:0,0,24,37 +chrX 2450129 . A . . END=2450149 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1800 +chrX 2450150 . CAATA C, 2565.01 . AS_QUALapprox=|2575|0;AS_VarDP=0|58|0;DP=76;QUALapprox=2575;RAW_GT_COUNT=0,0,1;RAW_MQandDP=273600,76;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,58,0:58:99:2575,0,2575:0,0,25,33 +chrX 2450155 . A . . END=2450231 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1800 +chrX 2450232 . G A, 2216.04 . AS_QUALapprox=|2226|0;AS_VarDP=0|68|0;DP=75;QUALapprox=2226;RAW_GT_COUNT=0,0,1;RAW_MQandDP=270000,75;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,68,0:68:99:2226,0,2226:0,0,34,34 +chrX 2450233 . A . . END=2450887 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1463 +chrX 2450888 . A G, 1984.04 . AS_QUALapprox=|1994|0;AS_VarDP=0|61|0;DP=61;QUALapprox=1994;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,61,0:61:99:1994,0,1994:0,0,32,29 +chrX 2450889 . T . . END=2450920 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1800 +chrX 2450921 . T C, 1975.04 . AS_QUALapprox=|1985|0;AS_VarDP=0|62|0;DP=67;QUALapprox=1985;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:1985,0,1985:0,0,32,30 +chrX 2450922 . G . . END=2451232 GT:DP:GQ:MIN_DP:PL 0:73:99:73:0,1463 +chrX 2451233 . TA T, 706.01 . AS_QUALapprox=|716|0;AS_VarDP=1|32|0;BaseQRankSum=-0.441;DP=49;MQRankSum=5.834;QUALapprox=716;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172564,49;ReadPosRankSum=0.893;VarDP=33 GT:AD:DP:GQ:PL:SB 1:1,32,0:33:99:716,0,738:0,1,14,18 +chrX 2451235 . A . . END=2451348 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1598 +chrX 2451349 . T C, 2074.04 . AS_QUALapprox=|2084|0;AS_VarDP=1|63|0;BaseQRankSum=2.781;DP=65;MQRankSum=-0.268;QUALapprox=2084;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230180,65;ReadPosRankSum=0.352;VarDP=64 GT:AD:DP:GQ:PL:SB 1:1,63,0:64:99:2084,0,2093:0,1,29,34 +chrX 2451350 . T . . END=2451708 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1800 +chrX 2451709 . A G, 2426.04 . AS_QUALapprox=|2436|0;AS_VarDP=0|73|0;DP=78;QUALapprox=2436;RAW_GT_COUNT=0,0,1;RAW_MQandDP=280800,78;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,73,0:73:99:2436,0,2436:0,0,36,37 +chrX 2451710 . C . . END=2452067 GT:DP:GQ:MIN_DP:PL 0:71:54:69:0,54 +chrX 2452068 . G T, 1743.04 . AS_QUALapprox=|1753|0;AS_VarDP=0|57|0;DP=58;QUALapprox=1753;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:1753,0,1753:0,0,22,35 +chrX 2452069 . G . . END=2452133 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,1458 +chrX 2452134 . C T, 1706.04 . AS_QUALapprox=|1716|0;AS_VarDP=4|56|0;BaseQRankSum=3.627;DP=60;MQRankSum=0.000;QUALapprox=1716;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;ReadPosRankSum=-0.652;VarDP=60 GT:AD:DP:GQ:PL:SB 1:4,56,0:60:99:1716,0,1785:1,3,23,33 +chrX 2452135 . C . . END=2452231 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1573 +chrX 2452232 . T C, 1652.04 . AS_QUALapprox=|1662|0;AS_VarDP=0|53|0;DP=55;QUALapprox=1662;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=53 GT:AD:DP:GQ:PL:SB 1:0,53,0:53:99:1662,0,1662:0,0,27,26 +chrX 2452233 . G . . END=2452443 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1354 +chrX 2452444 . T A, 1694.04 . AS_QUALapprox=|1704|0;AS_VarDP=0|39|0;DP=40;QUALapprox=1704;RAW_GT_COUNT=0,0,1;RAW_MQandDP=144000,40;VarDP=39 GT:AD:DP:GQ:PL:SB 1:0,39,0:39:99:1704,0,1704:0,0,25,14 +chrX 2452445 . G . . END=2452452 GT:DP:GQ:MIN_DP:PL 0:39:99:39:0,1210 +chrX 2452453 . G A, 1714.04 . AS_QUALapprox=|1724|0;AS_VarDP=0|39|0;DP=41;QUALapprox=1724;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147600,41;VarDP=39 GT:AD:DP:GQ:PL:SB 1:0,39,0:39:99:1724,0,1724:0,0,24,15 +chrX 2452454 . G . . END=2452675 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1402 +chrX 2452676 . T G, 2565.04 . AS_QUALapprox=|2575|0;AS_VarDP=0|60|0;DP=60;QUALapprox=2575;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:2575,0,2575:0,0,29,31 +chrX 2452677 . A . . END=2452693 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1676 +chrX 2452694 . A G, 2373.04 . AS_QUALapprox=|2383|0;AS_VarDP=0|56|0;DP=57;QUALapprox=2383;RAW_GT_COUNT=0,0,1;RAW_MQandDP=203200,57;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,56,0:56:99:2383,0,2383:0,0,27,29 +chrX 2452695 . C . . END=2452742 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1660 +chrX 2452743 . G T, 1727.04 . AS_QUALapprox=|1737|0;AS_VarDP=1|54|0;BaseQRankSum=2.487;DP=57;MQRankSum=0.000;QUALapprox=1737;RAW_GT_COUNT=0,0,1;RAW_MQandDP=203200,57;ReadPosRankSum=-0.410;VarDP=55 GT:AD:DP:GQ:PL:SB 1:1,54,0:55:99:1737,0,1746:0,1,33,21 +chrX 2452744 . G . . END=2452821 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,1588 +chrX 2452822 . A G, 2023.04 . AS_QUALapprox=|2033|0;AS_VarDP=0|64|0;DP=64;QUALapprox=2033;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,64,0:64:99:2033,0,2033:0,0,34,30 +chrX 2452823 . A . . END=2453541 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1385 +chrX 2453542 . T C, 1369.04 . AS_QUALapprox=|1379|0;AS_VarDP=0|43|0;DP=51;QUALapprox=1379;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172675,51;VarDP=43 GT:AD:DP:GQ:PL:SB 1:0,43,0:43:99:1379,0,1379:0,0,23,20 +chrX 2453543 . G . . END=2453753 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1082 +chrX 2453754 . T C, 1441.04 . AS_QUALapprox=|1451|0;AS_VarDP=0|42|0;DP=54;QUALapprox=1451;RAW_GT_COUNT=0,0,1;RAW_MQandDP=191236,54;VarDP=42 GT:AD:DP:GQ:PL:SB 1:0,42,0:42:99:1451,0,1451:0,0,21,21 +chrX 2453755 . A . . END=2454178 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1264 +chrX 2454179 . G T, 2693.04 . AS_QUALapprox=|2703|0;AS_VarDP=0|83|0;DP=89;QUALapprox=2703;RAW_GT_COUNT=0,0,1;RAW_MQandDP=304532,89;VarDP=83 GT:AD:DP:GQ:PL:SB 1:0,83,0:83:99:2703,0,2703:0,0,49,34 +chrX 2454180 . A . . END=2454254 GT:DP:GQ:MIN_DP:PL 0:75:99:75:0,1800 +chrX 2454255 . T G, 2351.04 . AS_QUALapprox=|2361|0;AS_VarDP=0|74|0;DP=77;QUALapprox=2361;RAW_GT_COUNT=0,0,1;RAW_MQandDP=254896,77;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,74,0:74:99:2361,0,2361:0,0,38,36 +chrX 2454256 . G . . END=2454351 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1800 +chrX 2454352 . C T, 2019.04 . AS_QUALapprox=|2029|0;AS_VarDP=0|61|0;DP=67;QUALapprox=2029;RAW_GT_COUNT=0,0,1;RAW_MQandDP=239281,67;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,61,0:61:99:2029,0,2029:0,0,28,33 +chrX 2454353 . G . . END=2454526 GT:DP:GQ:MIN_DP:PL 0:74:99:74:0,1800 +chrX 2454527 . C CAA, 1613.01 . AS_QUALapprox=|1623|0;AS_VarDP=0|48|0;DP=72;QUALapprox=1623;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255200,72;VarDP=48 GT:AD:DP:GQ:PL:SB 1:0,48,0:48:99:1623,0,1624:0,0,20,28 +chrX 2454528 . A . . END=2454626 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1553 +chrX 2454627 . A C, 1707.04 . AS_QUALapprox=|1717|0;AS_VarDP=0|53|0;DP=54;QUALapprox=1717;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=53 GT:AD:DP:GQ:PL:SB 1:0,53,0:53:99:1717,0,1717:0,0,27,26 +chrX 2454628 . C . . END=2454839 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1767 +chrX 2454840 . T C, 2848.04 . AS_QUALapprox=|2858|0;AS_VarDP=0|69|0;DP=70;QUALapprox=2858;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,69,0:69:99:2858,0,2858:0,0,42,27 +chrX 2454841 . G . . END=2454864 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1800 +chrX 2454865 . A C, 2666.04 . AS_QUALapprox=|2676|0;AS_VarDP=0|62|0;DP=64;QUALapprox=2676;RAW_GT_COUNT=0,0,1;RAW_MQandDP=227241,64;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:2676,0,2676:0,0,36,26 +chrX 2454866 . A . . END=2455111 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1439 +chrX 2455112 . C CA, 875.01 . AS_QUALapprox=|885|0;AS_VarDP=0|34|0;DP=46;QUALapprox=885;RAW_GT_COUNT=0,0,1;RAW_MQandDP=160576,46;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:885,0,885:0,0,21,13 +chrX 2455113 . A . . END=2455191 GT:DP:GQ:MIN_DP:PL 0:47:99:47:0,938 +chrX 2455192 . G C, 1697.04 . AS_QUALapprox=|1707|0;AS_VarDP=1|54|0;BaseQRankSum=-0.392;DP=59;MQRankSum=0.000;QUALapprox=1707;RAW_GT_COUNT=0,0,1;RAW_MQandDP=209376,59;ReadPosRankSum=-1.513;VarDP=55 GT:AD:DP:GQ:PL:SB 1:1,54,0:55:99:1707,0,1741:1,0,22,32 +chrX 2455193 . C . . END=2455233 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1730 +chrX 2455234 . T C, 1827.04 . AS_QUALapprox=|1837|0;AS_VarDP=1|57|0;BaseQRankSum=1.902;DP=62;MQRankSum=0.000;QUALapprox=1837;RAW_GT_COUNT=0,0,1;RAW_MQandDP=220176,62;ReadPosRankSum=0.986;VarDP=58 GT:AD:DP:GQ:PL:SB 1:1,57,0:58:99:1837,0,1861:1,0,22,35 +chrX 2455235 . A . . END=2455560 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1613 +chrX 2455561 . A G, 2076.04 . AS_QUALapprox=|2086|0;AS_VarDP=1|64|0;BaseQRankSum=-0.384;DP=66;MQRankSum=0.000;QUALapprox=2086;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;ReadPosRankSum=0.053;VarDP=65 GT:AD:DP:GQ:PL:SB 1:1,64,0:65:99:2086,0,2121:1,0,31,33 +chrX 2455562 . T . . END=2455787 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,555 +chrX 2455788 . C T, 1780.04 . AS_QUALapprox=|1790|0;AS_VarDP=0|55|0;DP=57;QUALapprox=1790;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:1790,0,1790:0,0,27,28 +chrX 2455789 . A . . END=2456612 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1043 +chrX 2456613 . CA C, 72.01 . AS_QUALapprox=|82|0;AS_VarDP=12|15|0;BaseQRankSum=-1.304;DP=39;MQRankSum=0.000;QUALapprox=82;RAW_GT_COUNT=0,0,1;RAW_MQandDP=137200,39;ReadPosRankSum=0.895;VarDP=27 GT:AD:DP:GQ:PL:SB 1:12,15,0:27:82:82,0,344:8,4,8,7 +chrX 2456615 . A . . END=2459549 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,506 +chrX 2459550 . GTATATATA G,GTA, 1388.01 . AS_QUALapprox=|1183|1398|0;AS_VarDP=0|21|27|0;DP=61;QUALapprox=1398;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216304,61;VarDP=48 GT:AD:DP:GQ:PL:SB 2:0,21,27,0:48:99:1398,215,0,1173:0,0,22,26 +chrX 2459559 . T . . END=2460279 GT:DP:GQ:MIN_DP:PL 0:64:74:64:0,74 +chrX 2460280 . AC A, 55.01 . AS_QUALapprox=|65|0;AS_VarDP=32|34|0;BaseQRankSum=-2.740;DP=69;MQRankSum=-0.940;QUALapprox=65;RAW_GT_COUNT=0,0,1;RAW_MQandDP=247201,69;ReadPosRankSum=-0.407;VarDP=66 GT:AD:DP:GQ:PL:SB 1:32,34,0:66:65:65,0,1247:20,12,19,15 +chrX 2460282 . C . . END=2460734 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1587 +chrX 2460735 . C A, 117.04 . AS_QUALapprox=|127|0;AS_VarDP=26|30|0;BaseQRankSum=0.852;DP=59;MQRankSum=-1.933;QUALapprox=127;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176438,59;ReadPosRankSum=-0.362;VarDP=56 GT:AD:DP:GQ:PL:SB 1:26,30,0:56:99:127,0,981:13,13,13,17 +chrX 2460736 . T . . END=2461643 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1588 +chrX 2461644 . T C, 258.04 . AS_QUALapprox=|268|0;AS_VarDP=24|32|0;BaseQRankSum=0.283;DP=57;MQRankSum=0.000;QUALapprox=268;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;ReadPosRankSum=-0.298;VarDP=56 GT:AD:DP:GQ:PL:SB 1:24,32,0:56:99:268,0,1042:13,11,17,15 +chrX 2461645 . G . . END=2462534 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1662 +chrX 2462535 . CA C, 1503.01 . AS_QUALapprox=|1513|0;AS_VarDP=0|53|0;DP=63;QUALapprox=1513;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=53 GT:AD:DP:GQ:PL:SB 1:0,53,0:53:99:1513,0,1513:0,0,18,35 +chrX 2462537 . A . . END=2463209 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1404 +chrX 2463210 . A G, 2849.04 . AS_QUALapprox=|2859|0;AS_VarDP=0|64|0;DP=69;QUALapprox=2859;RAW_GT_COUNT=0,0,1;RAW_MQandDP=247825,69;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,64,0:64:99:2859,0,2859:0,0,26,38 +chrX 2463211 . G A, 2849.04 . AS_QUALapprox=|2859|0;AS_VarDP=0|64|0;DP=69;QUALapprox=2859;RAW_GT_COUNT=0,0,1;RAW_MQandDP=247825,69;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,64,0:64:99:2859,0,2859:0,0,26,38 +chrX 2463212 . A . . END=2463273 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1796 +chrX 2463274 . C G, 343.04 . AS_QUALapprox=|353|0;AS_VarDP=23|35|0;BaseQRankSum=-2.020;DP=60;MQRankSum=-0.775;QUALapprox=353;RAW_GT_COUNT=0,0,1;RAW_MQandDP=215425,60;ReadPosRankSum=0.087;VarDP=58 GT:AD:DP:GQ:PL:SB 1:23,35,0:58:99:353,0,1132:11,12,12,23 +chrX 2463275 . C . . END=2463607 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,258 +chrX 2463608 . T C, 5.04 . AS_QUALapprox=|15|0;AS_VarDP=30|30|0;BaseQRankSum=0.081;DP=62;MQRankSum=-0.967;QUALapprox=15;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223081,62;ReadPosRankSum=-0.510;VarDP=60 GT:AD:DP:GQ:PL:SB 1:30,30,0:60:15:15,0,973:15,15,17,13 +chrX 2463609 . T . . END=2463850 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1665 +chrX 2463851 . G T, 243.04 . AS_QUALapprox=|253|0;AS_VarDP=29|36|0;BaseQRankSum=0.731;DP=66;MQRankSum=-0.867;QUALapprox=253;RAW_GT_COUNT=0,0,1;RAW_MQandDP=236601,66;ReadPosRankSum=-0.172;VarDP=65 GT:AD:DP:GQ:PL:SB 1:29,36,0:65:99:253,0,1201:13,16,17,19 +chrX 2463852 . C . . END=2463880 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1698 +chrX 2463881 . G A, 312.04 . AS_QUALapprox=|322|0;AS_VarDP=23|31|0;BaseQRankSum=1.793;DP=56;MQRankSum=-1.203;QUALapprox=322;RAW_GT_COUNT=0,0,1;RAW_MQandDP=200250,56;ReadPosRankSum=-0.394;VarDP=54 GT:AD:DP:GQ:PL:SB 1:23,31,0:54:99:322,0,1066:9,14,16,15 +chrX 2463882 . A . . END=2464204 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1355 +chrX 2464205 . G GCCA, 2981.01 . AS_QUALapprox=|2991|0;AS_VarDP=0|67|0;DP=74;QUALapprox=2991;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,67,0:67:99:2991,0,2992:0,0,25,42 +chrX 2464206 . C . . END=2464324 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1260 +chrX 2464325 . G . . END=2464339 GT:DP:GQ:MIN_DP:PL 0:63:0:63:0,0 +chrX 2464340 . G A, 109.04 . AS_QUALapprox=|1051|0;AS_VarDP=0|32|0;DP=69;QUALapprox=1051;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1051,0,1313:0,0,19,13 +chrX 2464341 . G . . END=2464373 GT:DP:GQ:MIN_DP:PL 0:64:0:64:0,0 +chrX 2464374 . G . . END=2464403 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1530 +chrX 2464404 . A G, 344.04 . AS_QUALapprox=|354|0;AS_VarDP=23|32|0;BaseQRankSum=-1.390;DP=56;MQRankSum=-2.160;QUALapprox=354;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190868,56;ReadPosRankSum=-0.956;VarDP=55 GT:AD:DP:GQ:PL:SB 1:23,32,0:55:99:354,0,1389:13,10,23,9 +chrX 2464405 . C . . END=2464411 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,900 +chrX 2464412 . C . . END=2464511 GT:DP:GQ:MIN_DP:PL 0:52:0:52:0,0 +chrX 2464512 . C . . END=2465142 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,243 +chrX 2465143 . A T, 129.04 . AS_QUALapprox=|139|0;AS_VarDP=29|33|0;BaseQRankSum=0.149;DP=62;MQRankSum=0.000;QUALapprox=139;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;ReadPosRankSum=1.962;VarDP=62 GT:AD:DP:GQ:PL:SB 1:29,33,0:62:99:139,0,1127:16,13,13,20 +chrX 2465144 . A . . END=2465432 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1800 +chrX 2465433 . G A, 98.04 . AS_QUALapprox=|108|0;AS_VarDP=31|33|0;BaseQRankSum=-1.811;DP=68;MQRankSum=1.063;QUALapprox=108;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244225,68;ReadPosRankSum=-1.143;VarDP=64 GT:AD:DP:GQ:PL:SB 1:31,33,0:64:99:108,0,1472:20,11,15,18 +chrX 2465434 . C . . END=2465435 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1800 +chrX 2465436 . G C, 66.04 . AS_QUALapprox=|76|0;AS_VarDP=31|32|0;BaseQRankSum=0.420;DP=65;MQRankSum=1.048;QUALapprox=76;RAW_GT_COUNT=0,0,1;RAW_MQandDP=233425,65;ReadPosRankSum=-1.039;VarDP=63 GT:AD:DP:GQ:PL:SB 1:31,32,0:63:76:76,0,1439:20,11,14,18 +chrX 2465437 . T . . END=2465520 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1800 +chrX 2465521 . G A, 143.04 . AS_QUALapprox=|153|0;AS_VarDP=35|39|0;BaseQRankSum=0.334;DP=78;MQRankSum=1.083;QUALapprox=153;RAW_GT_COUNT=0,0,1;RAW_MQandDP=280225,78;ReadPosRankSum=-0.991;VarDP=74 GT:AD:DP:GQ:PL:SB 1:35,39,0:74:99:153,0,1265:12,23,19,20 +chrX 2465522 . G . . END=2465599 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1800 +chrX 2465600 . C T, 164.04 . AS_QUALapprox=|174|0;AS_VarDP=29|34|0;BaseQRankSum=0.373;DP=65;MQRankSum=0.000;QUALapprox=174;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;ReadPosRankSum=-1.407;VarDP=63 GT:AD:DP:GQ:PL:SB 1:29,34,0:63:99:174,0,1087:12,17,13,21 +chrX 2465601 . G . . END=2465808 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,755 +chrX 2465809 . CAA C,CAAAAAAAAAAAAAAAA,CAAAAAAAAAAAAA,CAAAAAA, 519.01 . AS_QUALapprox=|529|0|97|469|0;AS_VarDP=0|16|0|1|14|0;DP=43;QUALapprox=529;RAW_GT_COUNT=0,0,1;RAW_MQandDP=146250,43;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,16,0,1,14,0:31:60:529,0,559,432,60,681:0,0,16,15 +chrX 2465812 . A . . END=2466658 GT:DP:GQ:MIN_DP:PL 0:77:99:77:0,309 +chrX 2466659 . T C, 660.04 . AS_QUALapprox=|670|0;AS_VarDP=21|43|0;BaseQRankSum=-1.398;DP=65;MQRankSum=0.000;QUALapprox=670;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;ReadPosRankSum=-1.223;VarDP=64 GT:AD:DP:GQ:PL:SB 1:21,43,0:64:99:670,0,1353:10,11,21,22 +chrX 2466660 . C . . END=2467040 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1523 +chrX 2467041 . G A, 783.04 . AS_QUALapprox=|793|0;AS_VarDP=14|37|0;BaseQRankSum=0.434;DP=53;MQRankSum=0.000;QUALapprox=793;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;ReadPosRankSum=0.475;VarDP=51 GT:AD:DP:GQ:PL:SB 1:14,37,0:51:99:793,0,1244:8,6,17,20 +chrX 2467042 . G . . END=2467076 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,1355 +chrX 2467077 . A AC, 703.01 . AS_QUALapprox=|713|0;AS_VarDP=16|33|0;BaseQRankSum=-1.415;DP=51;MQRankSum=0.000;QUALapprox=713;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;ReadPosRankSum=-0.608;VarDP=49 GT:AD:DP:GQ:PL:SB 1:16,33,0:49:99:713,0,1255:5,11,15,18 +chrX 2467078 . A . . END=2467348 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,292 +chrX 2467349 . C T, 50.04 . AS_QUALapprox=|60|0;AS_VarDP=33|38|0;BaseQRankSum=-1.990;DP=76;MQRankSum=0.000;QUALapprox=60;RAW_GT_COUNT=0,0,1;RAW_MQandDP=273600,76;ReadPosRankSum=0.750;VarDP=71 GT:AD:DP:GQ:PL:SB 1:33,38,0:71:60:60,0,1115:18,15,21,17 +chrX 2467350 . C . . END=2467441 GT:DP:GQ:MIN_DP:PL 0:83:99:83:0,1800 +chrX 2467442 . T A, 228.04 . AS_QUALapprox=|238|0;AS_VarDP=39|46|0;BaseQRankSum=0.579;DP=88;MQRankSum=0.000;QUALapprox=238;RAW_GT_COUNT=0,0,1;RAW_MQandDP=316800,88;ReadPosRankSum=0.896;VarDP=85 GT:AD:DP:GQ:PL:SB 1:39,46,0:85:99:238,0,1498:20,19,23,23 +chrX 2467443 . C . . END=2467627 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,252 +chrX 2467628 . TG T, 679.01 . AS_QUALapprox=|689|0;AS_VarDP=25|42|0;BaseQRankSum=-1.889;DP=70;MQRankSum=0.000;QUALapprox=689;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;ReadPosRankSum=1.090;VarDP=67 GT:AD:DP:GQ:PL:SB 1:25,42,0:67:99:689,0,1700:12,13,19,23 +chrX 2467630 . T . . END=2467897 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,173 +chrX 2467898 . G A, 1784.04 . AS_QUALapprox=|1794|0;AS_VarDP=1|54|0;BaseQRankSum=3.160;DP=56;MQRankSum=0.000;QUALapprox=1794;RAW_GT_COUNT=0,0,1;RAW_MQandDP=200704,56;ReadPosRankSum=-0.536;VarDP=55 GT:AD:DP:GQ:PL:SB 1:1,54,0:55:99:1794,0,1819:0,1,29,25 +chrX 2467899 . G . . END=2467951 GT:DP:GQ:MIN_DP:PL 0:46:99:46:0,1236 +chrX 2467952 . A G, 52.04 . AS_QUALapprox=|62|0;AS_VarDP=21|25|0;BaseQRankSum=-2.123;DP=47;MQRankSum=-0.873;QUALapprox=62;RAW_GT_COUNT=0,0,1;RAW_MQandDP=168304,47;ReadPosRankSum=1.070;VarDP=46 GT:AD:DP:GQ:PL:SB 1:21,25,0:46:62:62,0,788:14,7,14,11 +chrX 2467953 . A . . END=2467980 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,292 +chrX 2467981 . T . . END=2467981 GT:DP:GQ:MIN_DP:PL 0:49:0:49:0,0 +chrX 2467982 . G . . END=2468105 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,198 +chrX 2468106 . A G, 198.04 . AS_QUALapprox=|208|0;AS_VarDP=33|39|0;BaseQRankSum=0.403;DP=74;MQRankSum=-2.914;QUALapprox=208;RAW_GT_COUNT=0,0,1;RAW_MQandDP=251732,74;ReadPosRankSum=-1.130;VarDP=72 GT:AD:DP:GQ:PL:SB 1:33,39,0:72:99:208,0,1693:13,20,23,16 +chrX 2468107 . A . . END=2468116 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1800 +chrX 2468117 . T A, 333.04 . AS_QUALapprox=|343|0;AS_VarDP=30|39|0;BaseQRankSum=-0.347;DP=74;MQRankSum=-2.784;QUALapprox=343;RAW_GT_COUNT=0,0,1;RAW_MQandDP=251732,74;ReadPosRankSum=-1.041;VarDP=69 GT:AD:DP:GQ:PL:SB 1:30,39,0:69:99:343,0,1682:12,18,23,16 +chrX 2468118 . C . . END=2468525 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,354 +chrX 2468526 . T C, 412.04 . AS_QUALapprox=|422|0;AS_VarDP=23|35|0;BaseQRankSum=1.355;DP=59;MQRankSum=1.269;QUALapprox=422;RAW_GT_COUNT=0,0,1;RAW_MQandDP=211401,59;ReadPosRankSum=0.684;VarDP=58 GT:AD:DP:GQ:PL:SB 1:23,35,0:58:99:422,0,1172:13,10,24,11 +chrX 2468527 . G . . END=2468620 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1553 +chrX 2468621 . G A, 2446.04 . AS_QUALapprox=|2456|0;AS_VarDP=0|59|0;DP=63;QUALapprox=2456;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:2456,0,2555:0,0,27,32 +chrX 2468622 . C . . END=2468654 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1488 +chrX 2468655 . A C, 2367.04 . AS_QUALapprox=|2377|0;AS_VarDP=0|57|0;DP=62;QUALapprox=2377;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:2377,0,2516:0,0,22,35 +chrX 2468656 . T . . END=2468694 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1561 +chrX 2468695 . C T, 1935.04 . AS_QUALapprox=|1945|0;AS_VarDP=0|62|0;DP=69;QUALapprox=1945;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:1945,0,2457:0,0,20,42 +chrX 2468696 . T . . END=2468804 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1572 +chrX 2468805 . G C, 76.04 . AS_QUALapprox=|86|0;AS_VarDP=24|29|0;BaseQRankSum=-1.065;DP=55;MQRankSum=0.135;QUALapprox=86;RAW_GT_COUNT=0,0,1;RAW_MQandDP=193050,55;ReadPosRankSum=-0.072;VarDP=53 GT:AD:DP:GQ:PL:SB 1:24,29,0:53:86:86,0,879:7,17,20,9 +chrX 2468806 . G . . END=2468961 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1394 +chrX 2468962 . A G, 1661.04 . AS_QUALapprox=|1671|0;AS_VarDP=0|55|0;DP=60;QUALapprox=1671;RAW_GT_COUNT=0,0,1;RAW_MQandDP=213185,60;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:1671,0,1671:0,0,29,26 +chrX 2468963 . C . . END=2469827 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1000 +chrX 2469828 . A G, 2360.04 . AS_QUALapprox=|2370|0;AS_VarDP=0|74|0;DP=76;QUALapprox=2370;RAW_GT_COUNT=0,0,1;RAW_MQandDP=273600,76;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,74,0:74:99:2370,0,2370:0,0,41,33 +chrX 2469829 . A . . END=2470312 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,949 +chrX 2470313 . G A, 1895.04 . AS_QUALapprox=|1905|0;AS_VarDP=4|64|0;BaseQRankSum=0.294;DP=71;MQRankSum=-0.188;QUALapprox=1905;RAW_GT_COUNT=0,0,1;RAW_MQandDP=251058,71;ReadPosRankSum=1.278;VarDP=68 GT:AD:DP:GQ:PL:SB 1:4,64,0:68:99:1905,0,2049:2,2,44,20 +chrX 2470314 . T . . END=2470444 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1800 +chrX 2470445 . C T, 2287.04 . AS_QUALapprox=|2297|0;AS_VarDP=0|70|0;DP=72;QUALapprox=2297;RAW_GT_COUNT=0,0,1;RAW_MQandDP=256050,72;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,70,0:70:99:2297,0,2297:0,0,40,30 +chrX 2470446 . A . . END=2470647 GT:DP:GQ:MIN_DP:PL 0:82:99:82:0,1800 +chrX 2470648 . T C, 2195.04 . AS_QUALapprox=|2205|0;AS_VarDP=0|70|0;DP=74;QUALapprox=2205;RAW_GT_COUNT=0,0,1;RAW_MQandDP=251728,74;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,70,0:70:99:2205,0,2205:0,0,31,39 +chrX 2470649 . G . . END=2471208 GT:DP:GQ:MIN_DP:PL 0:75:99:75:0,1746 +chrX 2471209 . C G, 2052.04 . AS_QUALapprox=|2062|0;AS_VarDP=0|66|0;DP=67;QUALapprox=2062;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=66 GT:AD:DP:GQ:PL:SB 1:0,66,0:66:99:2062,0,2062:0,0,31,35 +chrX 2471210 . T . . END=2471377 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1800 +chrX 2471378 . A C, 1874.04 . AS_QUALapprox=|1884|0;AS_VarDP=0|58|0;DP=59;QUALapprox=1884;RAW_GT_COUNT=0,0,1;RAW_MQandDP=211825,59;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,58,0:58:99:1884,0,1884:0,0,21,37 +chrX 2471379 . C . . END=2471471 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1449 +chrX 2471472 . C CAGA, 1835.01 . AS_QUALapprox=|1845|0;AS_VarDP=0|41|0;DP=46;QUALapprox=1845;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;VarDP=41 GT:AD:DP:GQ:PL:SB 1:0,41,0:41:99:1845,0,1845:0,0,20,21 +chrX 2471473 . A . . END=2471563 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,844 +chrX 2471564 . C CA, 867.01 . AS_QUALapprox=|877|0;AS_VarDP=0|34|0;DP=38;QUALapprox=877;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136225,38;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:877,0,877:0,0,19,15 +chrX 2471565 . A . . END=2471614 GT:DP:GQ:MIN_DP:PL 0:43:99:43:0,1161 +chrX 2471615 . T C, 1463.04 . AS_QUALapprox=|1473|0;AS_VarDP=1|47|0;BaseQRankSum=-0.494;DP=50;MQRankSum=0.000;QUALapprox=1473;RAW_GT_COUNT=0,0,1;RAW_MQandDP=178325,50;ReadPosRankSum=1.661;VarDP=48 GT:AD:DP:GQ:PL:SB 1:1,47,0:48:99:1473,0,1508:1,0,28,19 +chrX 2471616 . C . . END=2471717 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1671 +chrX 2471718 . T C, 2106.04 . AS_QUALapprox=|2116|0;AS_VarDP=1|51|0;BaseQRankSum=1.648;DP=54;MQRankSum=0.000;QUALapprox=2116;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;ReadPosRankSum=-0.347;VarDP=52 GT:AD:DP:GQ:PL:SB 1:1,51,0:52:99:2116,0,2161:1,0,28,23 +chrX 2471719 . G . . END=2471735 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,1568 +chrX 2471736 . G A, 2080.04 . AS_QUALapprox=|2090|0;AS_VarDP=1|50|0;BaseQRankSum=-0.349;DP=55;MQRankSum=0.000;QUALapprox=2090;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;ReadPosRankSum=0.318;VarDP=51 GT:AD:DP:GQ:PL:SB 1:1,50,0:51:99:2090,0,2135:1,0,27,23 +chrX 2471737 . A . . END=2471763 GT:DP:GQ:MIN_DP:PL 0:46:99:46:0,1428 +chrX 2471764 . C T, 1543.04 . AS_QUALapprox=|1553|0;AS_VarDP=0|47|0;DP=51;QUALapprox=1553;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=47 GT:AD:DP:GQ:PL:SB 1:0,47,0:47:99:1553,0,1553:0,0,24,23 +chrX 2471765 . T . . END=2471815 GT:DP:GQ:MIN_DP:PL 0:47:99:47:0,1400 +chrX 2471816 . T C, 1542.04 . AS_QUALapprox=|1552|0;AS_VarDP=1|50|0;BaseQRankSum=-0.506;DP=57;MQRankSum=0.000;QUALapprox=1552;RAW_GT_COUNT=0,0,1;RAW_MQandDP=204625,57;ReadPosRankSum=0.544;VarDP=51 GT:AD:DP:GQ:PL:SB 1:1,50,0:51:99:1552,0,1587:1,0,20,30 +chrX 2471817 . G . . END=2471846 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1573 +chrX 2471847 . T G, 1592.04 . AS_QUALapprox=|1602|0;AS_VarDP=1|52|0;BaseQRankSum=-0.647;DP=58;MQRankSum=0.000;QUALapprox=1602;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208225,58;ReadPosRankSum=-0.523;VarDP=53 GT:AD:DP:GQ:PL:SB 1:1,52,0:53:99:1602,0,1637:1,0,26,26 +chrX 2471848 . G . . END=2471887 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1637 +chrX 2471888 . A G, 1661.04 . AS_QUALapprox=|1671|0;AS_VarDP=1|55|0;BaseQRankSum=1.284;DP=59;MQRankSum=0.000;QUALapprox=1671;RAW_GT_COUNT=0,0,1;RAW_MQandDP=211825,59;ReadPosRankSum=-0.619;VarDP=56 GT:AD:DP:GQ:PL:SB 1:1,55,0:56:99:1671,0,1696:1,0,28,27 +chrX 2471889 . T . . END=2471920 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1594 +chrX 2471921 . A G, 2218.04 . AS_QUALapprox=|2228|0;AS_VarDP=1|51|0;BaseQRankSum=1.572;DP=54;MQRankSum=0.000;QUALapprox=2228;RAW_GT_COUNT=0,0,1;RAW_MQandDP=193825,54;ReadPosRankSum=0.918;VarDP=52 GT:AD:DP:GQ:PL:SB 1:1,51,0:52:99:2228,0,2273:1,0,25,26 +chrX 2471922 . G . . END=2471926 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,1583 +chrX 2471927 . A C, 2208.04 . AS_QUALapprox=|2218|0;AS_VarDP=1|51|0;BaseQRankSum=-0.533;DP=54;MQRankSum=0.000;QUALapprox=2218;RAW_GT_COUNT=0,0,1;RAW_MQandDP=193825,54;ReadPosRankSum=1.233;VarDP=52 GT:AD:DP:GQ:PL:SB 1:1,51,0:52:99:2218,0,2263:1,0,25,26 +chrX 2471928 . C . . END=2471983 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1463 +chrX 2471984 . A G, 2352.04 . AS_QUALapprox=|2362|0;AS_VarDP=0|55|0;DP=55;QUALapprox=2362;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:2362,0,2362:0,0,31,24 +chrX 2471985 . A . . END=2472005 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1731 +chrX 2472006 . G A, 2441.04 . AS_QUALapprox=|2451|0;AS_VarDP=0|58|0;DP=58;QUALapprox=2451;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,58,0:58:99:2451,0,2451:0,0,32,26 +chrX 2472007 . T . . END=2472031 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1642 +chrX 2472032 . T C, 1746.04 . AS_QUALapprox=|1756|0;AS_VarDP=0|54|0;DP=55;QUALapprox=1756;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=54 GT:AD:DP:GQ:PL:SB 1:0,54,0:54:99:1756,0,1756:0,0,30,24 +chrX 2472033 . T . . END=2472060 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1662 +chrX 2472061 . C G, 1811.04 . AS_QUALapprox=|1821|0;AS_VarDP=0|54|0;DP=55;QUALapprox=1821;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=54 GT:AD:DP:GQ:PL:SB 1:0,54,0:54:99:1821,0,1821:0,0,33,21 +chrX 2472062 . T . . END=2472092 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1683 +chrX 2472093 . C T, 123.04 . AS_QUALapprox=|133|0;AS_VarDP=25|28|0;BaseQRankSum=1.892;DP=55;MQRankSum=-0.907;QUALapprox=133;RAW_GT_COUNT=0,0,1;RAW_MQandDP=197425,55;ReadPosRankSum=-0.339;VarDP=53 GT:AD:DP:GQ:PL:SB 1:25,28,0:53:99:133,0,972:17,8,18,10 +chrX 2472094 . G . . END=2472142 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,787 +chrX 2472143 . C CAAA, 1372.01 . AS_QUALapprox=|1382|0;AS_VarDP=0|36|0;DP=49;QUALapprox=1382;RAW_GT_COUNT=0,0,1;RAW_MQandDP=175716,49;VarDP=36 GT:AD:DP:GQ:PL:SB 1:0,36,0:36:99:1382,0,1383:0,0,21,15 +chrX 2472144 . A . . END=2472188 GT:DP:GQ:MIN_DP:PL 0:40:99:40:0,1044 +chrX 2472189 . C T, 1305.04 . AS_QUALapprox=|1315|0;AS_VarDP=0|40|0;DP=43;QUALapprox=1315;RAW_GT_COUNT=0,0,1;RAW_MQandDP=153541,43;VarDP=40 GT:AD:DP:GQ:PL:SB 1:0,40,0:40:99:1315,0,1315:0,0,22,18 +chrX 2472190 . G . . END=2472219 GT:DP:GQ:MIN_DP:PL 0:46:99:46:0,1355 +chrX 2472220 . T C, 1562.04 . AS_QUALapprox=|1572|0;AS_VarDP=0|49|0;DP=50;QUALapprox=1572;RAW_GT_COUNT=0,0,1;RAW_MQandDP=178166,50;VarDP=49 GT:AD:DP:GQ:PL:SB 1:0,49,0:49:99:1572,0,1572:0,0,27,22 +chrX 2472221 . A . . END=2472253 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1599 +chrX 2472254 . C T, 1906.04 . AS_QUALapprox=|1916|0;AS_VarDP=1|59|0;BaseQRankSum=2.450;DP=61;MQRankSum=-0.093;QUALapprox=1916;RAW_GT_COUNT=0,0,1;RAW_MQandDP=218450,61;ReadPosRankSum=1.444;VarDP=60 GT:AD:DP:GQ:PL:SB 1:1,59,0:60:99:1916,0,1925:1,0,30,29 +chrX 2472255 . C . . END=2472459 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1713 +chrX 2472460 . A G, 1963.04 . AS_QUALapprox=|1973|0;AS_VarDP=0|64|0;DP=69;QUALapprox=1973;RAW_GT_COUNT=0,0,1;RAW_MQandDP=245476,69;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,64,0:64:99:1973,0,1973:0,0,38,26 +chrX 2472461 . C . . END=2472685 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1800 +chrX 2472686 . T C, 2068.04 . AS_QUALapprox=|2078|0;AS_VarDP=2|67|0;BaseQRankSum=2.619;DP=69;MQRankSum=0.000;QUALapprox=2078;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;ReadPosRankSum=-0.358;VarDP=69 GT:AD:DP:GQ:PL:SB 1:2,67,0:69:99:2078,0,2168:1,1,25,42 +chrX 2472687 . G . . END=2472814 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1800 +chrX 2472815 . T C, 1910.04 . AS_QUALapprox=|1920|0;AS_VarDP=0|58|0;DP=58;QUALapprox=1920;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,58,0:58:99:1920,0,1920:0,0,34,24 +chrX 2472816 . A . . END=2472855 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1800 +chrX 2472856 . T C, 2950.04 . AS_QUALapprox=|2960|0;AS_VarDP=0|67|0;DP=68;QUALapprox=2960;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,67,0:67:99:2960,0,2960:0,0,38,29 +chrX 2472857 . A . . END=2472873 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1800 +chrX 2472874 . G C, 3079.04 . AS_QUALapprox=|3089|0;AS_VarDP=0|71|0;DP=71;QUALapprox=3089;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,71,0:71:99:3089,0,3089:0,0,40,31 +chrX 2472875 . G . . END=2472907 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1800 +chrX 2472908 . A G, 2048.04 . AS_QUALapprox=|2058|0;AS_VarDP=0|66|0;DP=67;QUALapprox=2058;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=66 GT:AD:DP:GQ:PL:SB 1:0,66,0:66:99:2058,0,2058:0,0,35,31 +chrX 2472909 . T . . END=2472980 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1800 +chrX 2472981 . T C, 2487.04 . AS_QUALapprox=|2497|0;AS_VarDP=0|56|0;DP=59;QUALapprox=2497;RAW_GT_COUNT=0,0,1;RAW_MQandDP=197785,59;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,56,0:56:99:2497,0,2497:0,0,23,33 +chrX 2472982 . A . . END=2472987 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1786 +chrX 2472988 . G A, 2453.04 . AS_QUALapprox=|2463|0;AS_VarDP=0|55|0;DP=55;QUALapprox=2463;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183385,55;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:2463,0,2463:0,0,23,32 +chrX 2472989 . C . . END=2473025 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,1548 +chrX 2473026 . A C, 2189.04 . AS_QUALapprox=|2199|0;AS_VarDP=0|50|0;DP=50;QUALapprox=2199;RAW_GT_COUNT=0,0,1;RAW_MQandDP=143690,50;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,50,0:50:99:2199,0,2199:0,0,20,30 +chrX 2473027 . A . . END=2473031 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,1639 +chrX 2473032 . C G, 2189.04 . AS_QUALapprox=|2199|0;AS_VarDP=0|50|0;DP=50;QUALapprox=2199;RAW_GT_COUNT=0,0,1;RAW_MQandDP=142590,50;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,50,0:50:99:2199,0,2199:0,0,19,31 +chrX 2473033 . T . . END=2473126 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,1366 +chrX 2473127 . T G, 2207.04 . AS_QUALapprox=|2217|0;AS_VarDP=0|50|0;DP=50;QUALapprox=2217;RAW_GT_COUNT=0,0,1;RAW_MQandDP=137335,50;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,50,0:50:99:2217,0,2217:0,0,24,26 +chrX 2473128 . G . . END=2473132 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,1588 +chrX 2473133 . A C, 2234.04 . AS_QUALapprox=|2244|0;AS_VarDP=0|50|0;DP=50;QUALapprox=2244;RAW_GT_COUNT=0,0,1;RAW_MQandDP=141813,50;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,50,0:50:99:2244,0,2244:0,0,24,26 +chrX 2473134 . G . . END=2473146 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1593 +chrX 2473147 . A AT, 2575.01 . AS_QUALapprox=|2585|0;AS_VarDP=0|59|0;DP=59;QUALapprox=2585;RAW_GT_COUNT=0,0,1;RAW_MQandDP=163440,59;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:2585,0,2585:0,0,30,29 +chrX 2473148 . G . . END=2473192 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1726 +chrX 2473193 . C T, 1784.04 . AS_QUALapprox=|1794|0;AS_VarDP=0|57|0;DP=58;QUALapprox=1794;RAW_GT_COUNT=0,0,1;RAW_MQandDP=159242,58;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:1794,0,1794:0,0,30,27 +chrX 2473194 . G . . END=2473254 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1717 +chrX 2473255 . C A, 2330.04 . AS_QUALapprox=|2340|0;AS_VarDP=0|52|0;DP=54;QUALapprox=2340;RAW_GT_COUNT=0,0,1;RAW_MQandDP=114361,54;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:2340,0,2340:0,0,27,25 +chrX 2473256 . A . . END=2473258 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1743 +chrX 2473259 . C T, 2375.04 . AS_QUALapprox=|2385|0;AS_VarDP=0|53|0;DP=53;QUALapprox=2385;RAW_GT_COUNT=0,0,1;RAW_MQandDP=109112,53;VarDP=53 GT:AD:DP:GQ:PL:SB 1:0,53,0:53:99:2385,0,2385:0,0,28,25 +chrX 2473260 . G . . END=2473264 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1667 +chrX 2473265 . G A, 2375.04 . AS_QUALapprox=|2385|0;AS_VarDP=0|53|0;DP=53;QUALapprox=2385;RAW_GT_COUNT=0,0,1;RAW_MQandDP=107193,53;VarDP=53 GT:AD:DP:GQ:PL:SB 1:0,53,0:53:99:2385,0,2385:0,0,29,24 +chrX 2473266 . T . . END=2473274 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1643 +chrX 2473275 . C G, 2240.04 . AS_QUALapprox=|2250|0;AS_VarDP=0|50|0;DP=50;QUALapprox=2250;RAW_GT_COUNT=0,0,1;RAW_MQandDP=95056,50;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,50,0:50:99:2250,0,2250:0,0,27,23 +chrX 2473276 . A . . END=2473289 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,1553 +chrX 2473290 . G A, 2240.04 . AS_QUALapprox=|2250|0;AS_VarDP=0|50|0;DP=50;QUALapprox=2250;RAW_GT_COUNT=0,0,1;RAW_MQandDP=85157,50;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,50,0:50:99:2250,0,2250:0,0,25,25 +chrX 2473291 . A . . END=2473304 GT:DP:GQ:MIN_DP:PL 0:46:99:46:0,1485 +chrX 2473305 . C T, 2052.04 . AS_QUALapprox=|2062|0;AS_VarDP=0|48|0;DP=48;QUALapprox=2062;RAW_GT_COUNT=0,0,1;RAW_MQandDP=81729,48;VarDP=48 GT:AD:DP:GQ:PL:SB 1:0,48,0:48:99:2062,0,2062:0,0,23,25 +chrX 2473306 . G . . END=2473338 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1494 +chrX 2473339 . C T, 2486.04 . AS_QUALapprox=|2496|0;AS_VarDP=0|56|0;DP=57;QUALapprox=2496;RAW_GT_COUNT=0,0,1;RAW_MQandDP=121123,57;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,56,0:56:99:2496,0,2496:0,0,26,30 +chrX 2473340 . G . . END=2473342 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1752 +chrX 2473343 . G T, 2452.04 . AS_QUALapprox=|2462|0;AS_VarDP=0|55|0;DP=56;QUALapprox=2462;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118316,56;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:2462,0,2462:0,0,25,30 +chrX 2473344 . C . . END=2473372 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1691 +chrX 2473373 . T C, 2500.04 . AS_QUALapprox=|2510|0;AS_VarDP=0|56|0;DP=58;QUALapprox=2510;RAW_GT_COUNT=0,0,1;RAW_MQandDP=137496,58;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,56,0:56:99:2510,0,2510:0,0,25,31 +chrX 2473374 . A . . END=2473374 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1800 +chrX 2473375 . A G, 2545.04 . AS_QUALapprox=|2555|0;AS_VarDP=0|57|0;DP=58;QUALapprox=2555;RAW_GT_COUNT=0,0,1;RAW_MQandDP=138516,58;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:2555,0,2555:0,0,25,32 +chrX 2473376 . C . . END=2473377 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,1747 +chrX 2473378 . T C, 2555.04 . AS_QUALapprox=|2565|0;AS_VarDP=0|57|0;DP=58;QUALapprox=2565;RAW_GT_COUNT=0,0,1;RAW_MQandDP=139671,58;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:2565,0,2565:0,0,25,32 +chrX 2473379 . T . . END=2473393 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,1697 +chrX 2473394 . C A, 2465.04 . AS_QUALapprox=|2475|0;AS_VarDP=0|55|0;DP=56;QUALapprox=2475;RAW_GT_COUNT=0,0,1;RAW_MQandDP=143080,56;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:2475,0,2475:0,0,21,34 +chrX 2473395 . G . . END=2473409 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,1636 +chrX 2473410 . A G, 2429.04 . AS_QUALapprox=|2439|0;AS_VarDP=0|55|0;DP=56;QUALapprox=2439;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147424,56;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:2439,0,2439:0,0,21,34 +chrX 2473411 . G . . END=2473486 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1151 +chrX 2473487 . G C, 1124.04 . AS_QUALapprox=|1134|0;AS_VarDP=0|35|0;DP=36;QUALapprox=1134;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100047,36;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,35,0:35:99:1134,0,1134:0,0,10,25 +chrX 2473488 . T . . END=2473561 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,630 +chrX 2473562 . A G, 922.04 . AS_QUALapprox=|932|0;AS_VarDP=0|23|0;DP=24;QUALapprox=932;RAW_GT_COUNT=0,0,1;RAW_MQandDP=61360,24;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:932,0,932:0,0,3,20 +chrX 2473563 . C . . END=2473571 GT:DP:GQ:MIN_DP:PL 0:20:99:20:0,467 +chrX 2473572 . G C, 644.04 . AS_QUALapprox=|654|0;AS_VarDP=0|15|0;DP=15;QUALapprox=654;RAW_GT_COUNT=0,0,1;RAW_MQandDP=28960,15;VarDP=15 GT:AD:DP:GQ:PL:SB 1:0,15,0:15:99:654,0,654:0,0,3,12 +chrX 2473573 . A . . END=2473624 GT:DP:GQ:MIN_DP:PL 0:13:99:13:0,313 +chrX 2473625 . C T, 499.04 . AS_QUALapprox=|509|0;AS_VarDP=0|12|0;DP=12;QUALapprox=509;RAW_GT_COUNT=0,0,1;RAW_MQandDP=16076,12;VarDP=12 GT:AD:DP:GQ:PL:SB 1:0,12,0:12:99:509,0,509:0,0,0,12 +chrX 2473626 . G . . END=2473629 GT:DP:GQ:MIN_DP:PL 0:12:99:12:0,372 +chrX 2473630 . CA C, 634.01 . AS_QUALapprox=|644|0;AS_VarDP=0|15|0;DP=15;QUALapprox=644;RAW_GT_COUNT=0,0,1;RAW_MQandDP=20005,15;VarDP=15 GT:AD:DP:GQ:PL:SB 1:0,15,0:15:99:644,0,644:0,0,0,15 +chrX 2473632 . A . . END=2473655 GT:DP:GQ:MIN_DP:PL 0:13:99:13:0,258 +chrX 2473656 . G A, 519.04 . AS_QUALapprox=|529|0;AS_VarDP=0|12|0;DP=12;QUALapprox=529;RAW_GT_COUNT=0,0,1;RAW_MQandDP=16076,12;VarDP=12 GT:AD:DP:GQ:PL:SB 1:0,12,0:12:99:529,0,529:0,0,0,12 +chrX 2473657 . C . . END=2473678 GT:DP:GQ:MIN_DP:PL 0:9:99:9:0,189 +chrX 2473679 . G T, 350.04 . AS_QUALapprox=|360|0;AS_VarDP=0|8|0;DP=8;QUALapprox=360;RAW_GT_COUNT=0,0,1;RAW_MQandDP=10187,8;VarDP=8 GT:AD:DP:GQ:PL:SB 1:0,8,0:8:99:360,0,360:0,0,0,8 +chrX 2473680 . C . . END=2473698 GT:DP:GQ:MIN_DP:PL 0:7:94:7:0,94 +chrX 2473699 . C G, 260.04 . AS_QUALapprox=|270|0;AS_VarDP=0|6|0;DP=6;QUALapprox=270;RAW_GT_COUNT=0,0,1;RAW_MQandDP=6987,6;VarDP=6 GT:AD:DP:GQ:PL:SB 1:0,6,0:6:99:270,0,270:0,0,0,6 +chrX 2473700 . G . . END=2473741 GT:DP:GQ:MIN_DP:PL 0:7:45:7:0,45 +chrX 2473742 . C . . END=2473774 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 2473775 . T . . END=2473777 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 2473778 . A . . END=2473778 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 2473779 . A . . END=2473783 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 2473784 . C . . END=2473784 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 2473785 . T . . END=2473785 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 2473786 . G . . END=2473786 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 2473787 . A . . END=2473788 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 2473789 . A . . END=2473789 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 2473790 . G . . END=2473792 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 2473793 . T . . END=2473793 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 2473794 . G . . END=2473796 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 2473797 . G . . END=2473798 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 2473799 . C . . END=2473800 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 2473801 . T . . END=2473801 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 2473802 . C . . END=2473802 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 2473803 . T . . END=2473803 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 2473804 . C . . END=2473804 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 2473805 . C . . END=2473805 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 2473806 . A . . END=2473813 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 2473814 . A . . END=2473814 GT:DP:GQ:MIN_DP:PL 0:3:0:3:0,0 +chrX 2473815 . A . . END=2473856 GT:DP:GQ:MIN_DP:PL 0:9:55:9:0,55 +chrX 2473857 . G A, 485.04 . AS_QUALapprox=|495|0;AS_VarDP=0|11|0;DP=11;QUALapprox=495;RAW_GT_COUNT=0,0,1;RAW_MQandDP=12654,11;VarDP=11 GT:AD:DP:GQ:PL:SB 1:0,11,0:11:99:495,0,495:0,0,11,0 +chrX 2473858 . C . . END=2473864 GT:DP:GQ:MIN_DP:PL 0:11:99:11:0,372 +chrX 2473865 . G T, 485.04 . AS_QUALapprox=|495|0;AS_VarDP=0|11|0;DP=11;QUALapprox=495;RAW_GT_COUNT=0,0,1;RAW_MQandDP=12654,11;VarDP=11 GT:AD:DP:GQ:PL:SB 1:0,11,0:11:99:495,0,495:0,0,11,0 +chrX 2473866 . C . . END=2473866 GT:DP:GQ:MIN_DP:PL 0:11:99:11:0,382 +chrX 2473867 . C T, 485.04 . AS_QUALapprox=|495|0;AS_VarDP=0|11|0;DP=11;QUALapprox=495;RAW_GT_COUNT=0,0,1;RAW_MQandDP=12654,11;VarDP=11 GT:AD:DP:GQ:PL:SB 1:0,11,0:11:99:495,0,495:0,0,11,0 +chrX 2473868 . A . . END=2473873 GT:DP:GQ:MIN_DP:PL 0:12:99:12:0,382 +chrX 2473874 . A C, 562.04 . AS_QUALapprox=|572|0;AS_VarDP=0|13|0;DP=13;QUALapprox=572;RAW_GT_COUNT=0,0,1;RAW_MQandDP=16190,13;VarDP=13 GT:AD:DP:GQ:PL:SB 1:0,13,0:13:99:572,0,572:0,0,13,0 +chrX 2473875 . T A, 562.04 . AS_QUALapprox=|572|0;AS_VarDP=0|13|0;DP=14;QUALapprox=572;RAW_GT_COUNT=0,0,1;RAW_MQandDP=18306,14;VarDP=13 GT:AD:DP:GQ:PL:SB 1:0,13,0:13:99:572,0,572:0,0,13,0 +chrX 2473876 . A . . END=2473972 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,477 +chrX 2473973 . C G, 1514.04 . AS_QUALapprox=|1524|0;AS_VarDP=0|35|0;DP=35;QUALapprox=1524;RAW_GT_COUNT=0,0,1;RAW_MQandDP=59383,35;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,35,0:35:99:1524,0,1524:0,0,29,6 +chrX 2473974 . A . . END=2473986 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,963 +chrX 2473987 . G A, 1545.04 . AS_QUALapprox=|1555|0;AS_VarDP=0|35|0;DP=35;QUALapprox=1555;RAW_GT_COUNT=0,0,1;RAW_MQandDP=64521,35;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,35,0:35:99:1555,0,1555:0,0,29,6 +chrX 2473988 . A . . END=2474000 GT:DP:GQ:MIN_DP:PL 0:38:99:38:0,987 +chrX 2474001 . C T, 1880.04 . AS_QUALapprox=|1890|0;AS_VarDP=0|42|0;DP=42;QUALapprox=1890;RAW_GT_COUNT=0,0,1;RAW_MQandDP=95935,42;VarDP=42 GT:AD:DP:GQ:PL:SB 1:0,42,0:42:99:1890,0,1890:0,0,32,10 +chrX 2474002 . G . . END=2474003 GT:DP:GQ:MIN_DP:PL 0:42:99:42:0,1330 +chrX 2474004 . G C, 1880.04 . AS_QUALapprox=|1890|0;AS_VarDP=0|42|0;DP=42;QUALapprox=1890;RAW_GT_COUNT=0,0,1;RAW_MQandDP=95935,42;VarDP=42 GT:AD:DP:GQ:PL:SB 1:0,42,0:42:99:1890,0,1890:0,0,32,10 +chrX 2474005 . G A, 1880.04 . AS_QUALapprox=|1890|0;AS_VarDP=0|42|0;DP=44;QUALapprox=1890;RAW_GT_COUNT=0,0,1;RAW_MQandDP=99465,44;VarDP=42 GT:AD:DP:GQ:PL:SB 1:0,42,0:42:99:1890,0,1890:0,0,32,10 +chrX 2474006 . T . . END=2474159 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1354 +chrX 2474160 . G GT, 2721.01 . AS_QUALapprox=|2731|0;AS_VarDP=0|62|0;DP=64;QUALapprox=2731;RAW_GT_COUNT=0,0,1;RAW_MQandDP=215214,64;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:2731,0,2731:0,0,31,31 +chrX 2474161 . T . . END=2474168 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1800 +chrX 2474169 . G A, 2629.04 . AS_QUALapprox=|2639|0;AS_VarDP=0|59|0;DP=59;QUALapprox=2639;RAW_GT_COUNT=0,0,1;RAW_MQandDP=204388,59;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:2639,0,2639:0,0,30,29 +chrX 2474170 . G . . END=2474172 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1800 +chrX 2474173 . C A, 2600.04 . AS_QUALapprox=|2610|0;AS_VarDP=0|58|0;DP=58;QUALapprox=2610;RAW_GT_COUNT=0,0,1;RAW_MQandDP=203092,58;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,58,0:58:99:2610,0,2610:0,0,28,30 +chrX 2474174 . G . . END=2474184 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1776 +chrX 2474185 . C T, 2735.04 . AS_QUALapprox=|2745|0;AS_VarDP=0|61|0;DP=61;QUALapprox=2745;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219481,61;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,61,0:61:99:2745,0,2745:0,0,29,32 +chrX 2474186 . G . . END=2474197 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1800 +chrX 2474198 . T G, 2870.04 . AS_QUALapprox=|2880|0;AS_VarDP=0|64|0;DP=64;QUALapprox=2880;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,64,0:64:99:2880,0,2880:0,0,31,33 +chrX 2474199 . T . . END=2474213 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1800 +chrX 2474214 . A C, 2960.04 . AS_QUALapprox=|2970|0;AS_VarDP=0|66|0;DP=66;QUALapprox=2970;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=66 GT:AD:DP:GQ:PL:SB 1:0,66,0:66:99:2970,0,2970:0,0,32,34 +chrX 2474215 . C . . END=2474229 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1800 +chrX 2474230 . C T, 2870.04 . AS_QUALapprox=|2880|0;AS_VarDP=0|64|0;DP=64;QUALapprox=2880;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,64,0:64:99:2880,0,2880:0,0,32,32 +chrX 2474231 . C T, 2870.04 . AS_QUALapprox=|2880|0;AS_VarDP=0|64|0;DP=64;QUALapprox=2880;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,64,0:64:99:2880,0,2880:0,0,32,32 +chrX 2474232 . G . . END=2474253 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1800 +chrX 2474254 . A C, 2823.04 . AS_QUALapprox=|2833|0;AS_VarDP=0|65|0;DP=66;QUALapprox=2833;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,65,0:65:99:2833,0,2833:0,0,31,34 +chrX 2474255 . A . . END=2474296 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1702 +chrX 2474297 . A G, 1681.04 . AS_QUALapprox=|1691|0;AS_VarDP=0|55|0;DP=57;QUALapprox=1691;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:1691,0,1691:0,0,26,29 +chrX 2474298 . A . . END=2474373 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1538 +chrX 2474374 . A G, 2147.04 . AS_QUALapprox=|2157|0;AS_VarDP=0|50|0;DP=52;QUALapprox=2157;RAW_GT_COUNT=0,0,1;RAW_MQandDP=185809,52;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,50,0:50:99:2157,0,2157:0,0,24,26 +chrX 2474375 . C . . END=2474379 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,1573 +chrX 2474380 . A G, 2221.04 . AS_QUALapprox=|2231|0;AS_VarDP=0|53|0;DP=54;QUALapprox=2231;RAW_GT_COUNT=0,0,1;RAW_MQandDP=191525,54;VarDP=53 GT:AD:DP:GQ:PL:SB 1:0,53,0:53:99:2231,0,2231:0,0,25,28 +chrX 2474381 . T . . END=2474467 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1400 +chrX 2474468 . A G, 2038.04 . AS_QUALapprox=|2048|0;AS_VarDP=2|48|0;BaseQRankSum=3.299;DP=52;MQRankSum=2.104;QUALapprox=2048;RAW_GT_COUNT=0,0,1;RAW_MQandDP=181771,52;ReadPosRankSum=-1.036;VarDP=50 GT:AD:DP:GQ:PL:SB 1:2,48,0:50:99:2048,0,2138:0,2,26,22 +chrX 2474469 . A . . END=2474469 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,1548 +chrX 2474470 . G T, 2084.04 . AS_QUALapprox=|2094|0;AS_VarDP=2|49|0;BaseQRankSum=2.945;DP=52;MQRankSum=2.134;QUALapprox=2094;RAW_GT_COUNT=0,0,1;RAW_MQandDP=179771,52;ReadPosRankSum=-0.834;VarDP=51 GT:AD:DP:GQ:PL:SB 1:2,49,0:51:99:2094,0,2184:0,2,26,23 +chrX 2474471 . A . . END=2474484 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,1493 +chrX 2474485 . G A, 2320.04 . AS_QUALapprox=|2330|0;AS_VarDP=2|54|0;BaseQRankSum=1.454;DP=57;MQRankSum=1.919;QUALapprox=2330;RAW_GT_COUNT=0,0,1;RAW_MQandDP=196107,57;ReadPosRankSum=0.206;VarDP=56 GT:AD:DP:GQ:PL:SB 1:2,54,0:56:99:2330,0,2420:0,2,30,24 +chrX 2474486 . C T, 2555.04 . AS_QUALapprox=|2565|0;AS_VarDP=0|57|0;DP=57;QUALapprox=2565;RAW_GT_COUNT=0,0,1;RAW_MQandDP=196107,57;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:2565,0,2565:0,0,31,26 +chrX 2474487 . T . . END=2474492 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1754 +chrX 2474493 . A G, 2524.04 . AS_QUALapprox=|2534|0;AS_VarDP=0|57|0;DP=57;QUALapprox=2534;RAW_GT_COUNT=0,0,1;RAW_MQandDP=196107,57;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:2534,0,2534:0,0,31,26 +chrX 2474494 . G . . END=2474494 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1800 +chrX 2474495 . A C, 2524.04 . AS_QUALapprox=|2534|0;AS_VarDP=0|57|0;DP=58;QUALapprox=2534;RAW_GT_COUNT=0,0,1;RAW_MQandDP=197131,58;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:2534,0,2534:0,0,31,26 +chrX 2474496 . A . . END=2474558 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1539 +chrX 2474559 . G C, 1834.04 . AS_QUALapprox=|1844|0;AS_VarDP=0|59|0;DP=63;QUALapprox=1844;RAW_GT_COUNT=0,0,1;RAW_MQandDP=225601,63;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:1844,0,1844:0,0,28,31 +chrX 2474560 . A . . END=2474606 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1697 +chrX 2474607 . G C, 2482.04 . AS_QUALapprox=|2492|0;AS_VarDP=0|59|0;DP=61;QUALapprox=2492;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:2492,0,2492:0,0,24,35 +chrX 2474608 . G . . END=2474614 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1732 +chrX 2474615 . G T, 2460.04 . AS_QUALapprox=|2470|0;AS_VarDP=0|58|0;DP=59;QUALapprox=2470;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,58,0:58:99:2470,0,2470:0,0,25,33 +chrX 2474616 . G . . END=2474649 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1800 +chrX 2474650 . A C, 2089.04 . AS_QUALapprox=|2099|0;AS_VarDP=0|65|0;DP=68;QUALapprox=2099;RAW_GT_COUNT=0,0,1;RAW_MQandDP=242721,68;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,65,0:65:99:2099,0,2099:0,0,32,33 +chrX 2474651 . G . . END=2474684 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1800 +chrX 2474685 . T C, 2639.04 . AS_QUALapprox=|2649|0;AS_VarDP=0|63|0;DP=64;QUALapprox=2649;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223299,64;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,63,0:63:99:2649,0,2649:0,0,31,32 +chrX 2474686 . G . . END=2474696 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1800 +chrX 2474697 . G A, 2452.04 . AS_QUALapprox=|2462|0;AS_VarDP=0|57|0;DP=58;QUALapprox=2462;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201699,58;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:2462,0,2462:0,0,27,30 +chrX 2474698 . T . . END=2474735 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1727 +chrX 2474736 . G A, 2419.04 . AS_QUALapprox=|2429|0;AS_VarDP=0|56|0;DP=57;QUALapprox=2429;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194957,57;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,56,0:56:99:2429,0,2429:0,0,31,25 +chrX 2474737 . T . . END=2474751 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1800 +chrX 2474752 . G A, 2570.04 . AS_QUALapprox=|2580|0;AS_VarDP=0|58|0;DP=59;QUALapprox=2580;RAW_GT_COUNT=0,0,1;RAW_MQandDP=204668,59;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,58,0:58:99:2580,0,2580:0,0,32,26 +chrX 2474753 . C . . END=2474760 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1800 +chrX 2474761 . T C, 2645.04 . AS_QUALapprox=|2655|0;AS_VarDP=0|59|0;DP=59;QUALapprox=2655;RAW_GT_COUNT=0,0,1;RAW_MQandDP=204747,59;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:2655,0,2655:0,0,34,25 +chrX 2474762 . G . . END=2474781 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1672 +chrX 2474782 . A G, 2735.04 . AS_QUALapprox=|2745|0;AS_VarDP=0|61|0;DP=61;QUALapprox=2745;RAW_GT_COUNT=0,0,1;RAW_MQandDP=211947,61;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,61,0:61:99:2745,0,2745:0,0,35,26 +chrX 2474783 . G . . END=2474799 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1800 +chrX 2474800 . T C, 2780.04 . AS_QUALapprox=|2790|0;AS_VarDP=0|62|0;DP=62;QUALapprox=2790;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216284,62;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:2790,0,2790:0,0,36,26 +chrX 2474801 . G C, 2825.04 . AS_QUALapprox=|2835|0;AS_VarDP=0|63|0;DP=63;QUALapprox=2835;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219884,63;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,63,0:63:99:2835,0,2835:0,0,37,26 +chrX 2474802 . C . . END=2474806 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1800 +chrX 2474807 . A G, 3050.04 . AS_QUALapprox=|3060|0;AS_VarDP=0|68|0;DP=68;QUALapprox=3060;RAW_GT_COUNT=0,0,1;RAW_MQandDP=239635,68;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,68,0:68:99:3060,0,3060:0,0,40,28 +chrX 2474808 . T . . END=2474833 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1800 +chrX 2474834 . C G, 3454.04 . AS_QUALapprox=|3464|0;AS_VarDP=0|77|0;DP=77;QUALapprox=3464;RAW_GT_COUNT=0,0,1;RAW_MQandDP=272035,77;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,77,0:77:99:3464,0,3464:0,0,46,31 +chrX 2474835 . T . . END=2474848 GT:DP:GQ:MIN_DP:PL 0:76:99:76:0,1800 +chrX 2474849 . C G, 3544.04 . AS_QUALapprox=|3554|0;AS_VarDP=0|79|0;DP=79;QUALapprox=3554;RAW_GT_COUNT=0,0,1;RAW_MQandDP=281116,79;VarDP=79 GT:AD:DP:GQ:PL:SB 1:0,79,0:79:99:3554,0,3554:0,0,47,32 +chrX 2474850 . C . . END=2474853 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1800 +chrX 2474854 . G A, 3364.04 . AS_QUALapprox=|3374|0;AS_VarDP=0|75|0;DP=75;QUALapprox=3374;RAW_GT_COUNT=0,0,1;RAW_MQandDP=267915,75;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,75,0:75:99:3374,0,3374:0,0,42,33 +chrX 2474855 . C . . END=2474867 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1800 +chrX 2474868 . T G, 3199.04 . AS_QUALapprox=|3209|0;AS_VarDP=0|72|0;DP=72;QUALapprox=3209;RAW_GT_COUNT=0,0,1;RAW_MQandDP=256431,72;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,72,0:72:99:3209,0,3209:0,0,39,33 +chrX 2474869 . A . . END=2474872 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1800 +chrX 2474873 . C T, 3199.04 . AS_QUALapprox=|3209|0;AS_VarDP=0|72|0;DP=75;QUALapprox=3209;RAW_GT_COUNT=0,0,1;RAW_MQandDP=267231,75;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,72,0:72:99:3209,0,3209:0,0,39,33 +chrX 2474874 . G . . END=2474986 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1399 +chrX 2474987 . A C, 2514.04 . AS_QUALapprox=|2524|0;AS_VarDP=0|57|0;DP=60;QUALapprox=2524;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:2524,0,2524:0,0,23,34 +chrX 2474988 . T C, 2514.04 . AS_QUALapprox=|2524|0;AS_VarDP=0|57|0;DP=60;QUALapprox=2524;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:2524,0,2524:0,0,23,34 +chrX 2474989 . G . . END=2475037 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1800 +chrX 2475038 . T C, 1750.04 . AS_QUALapprox=|1760|0;AS_VarDP=0|54|0;DP=57;QUALapprox=1760;RAW_GT_COUNT=0,0,1;RAW_MQandDP=202176,57;VarDP=54 GT:AD:DP:GQ:PL:SB 1:0,54,0:54:99:1760,0,1760:0,0,21,33 +chrX 2475039 . A . . END=2475078 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1375 +chrX 2475079 . T C, 1964.04 . AS_QUALapprox=|1974|0;AS_VarDP=0|45|0;DP=46;QUALapprox=1974;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;VarDP=45 GT:AD:DP:GQ:PL:SB 1:0,45,0:45:99:1974,0,1974:0,0,19,26 +chrX 2475080 . A . . END=2475086 GT:DP:GQ:MIN_DP:PL 0:43:99:43:0,1359 +chrX 2475087 . G A, 2050.04 . AS_QUALapprox=|2060|0;AS_VarDP=0|46|0;DP=47;QUALapprox=2060;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;VarDP=46 GT:AD:DP:GQ:PL:SB 1:0,46,0:46:99:2060,0,2060:0,0,19,27 +chrX 2475088 . C . . END=2475099 GT:DP:GQ:MIN_DP:PL 0:44:99:44:0,1394 +chrX 2475100 . G A, 2150.04 . AS_QUALapprox=|2160|0;AS_VarDP=0|48|0;DP=48;QUALapprox=2160;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=48 GT:AD:DP:GQ:PL:SB 1:0,48,0:48:99:2160,0,2160:0,0,22,26 +chrX 2475101 . T . . END=2475114 GT:DP:GQ:MIN_DP:PL 0:45:99:45:0,1370 +chrX 2475115 . A G, 2060.04 . AS_QUALapprox=|2070|0;AS_VarDP=0|46|0;DP=46;QUALapprox=2070;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;VarDP=46 GT:AD:DP:GQ:PL:SB 1:0,46,0:46:99:2070,0,2070:0,0,22,24 +chrX 2475116 . A . . END=2475120 GT:DP:GQ:MIN_DP:PL 0:43:99:43:0,1363 +chrX 2475121 . G T, 1925.04 . AS_QUALapprox=|1935|0;AS_VarDP=0|43|0;DP=43;QUALapprox=1935;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154800,43;VarDP=43 GT:AD:DP:GQ:PL:SB 1:0,43,0:43:99:1935,0,1935:0,0,20,23 +chrX 2475122 . G . . END=2475122 GT:DP:GQ:MIN_DP:PL 0:41:99:41:0,1325 +chrX 2475123 . G C, 1970.04 . AS_QUALapprox=|1980|0;AS_VarDP=0|44|0;DP=44;QUALapprox=1980;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158400,44;VarDP=44 GT:AD:DP:GQ:PL:SB 1:0,44,0:44:99:1980,0,1980:0,0,21,23 +chrX 2475124 . AC A, 1925.01 . AS_QUALapprox=|1935|0;AS_VarDP=0|43|0;DP=43;QUALapprox=1935;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154800,43;VarDP=43 GT:AD:DP:GQ:PL:SB 1:0,43,0:43:99:1935,0,1935:0,0,21,22 +chrX 2475126 . C . . END=2475139 GT:DP:GQ:MIN_DP:PL 0:41:99:41:0,1220 +chrX 2475140 . G C, 1894.04 . AS_QUALapprox=|1904|0;AS_VarDP=0|43|0;DP=46;QUALapprox=1904;RAW_GT_COUNT=0,0,1;RAW_MQandDP=164809,46;VarDP=43 GT:AD:DP:GQ:PL:SB 1:0,43,0:43:99:1904,0,1904:0,0,20,23 +chrX 2475141 . T . . END=2475174 GT:DP:GQ:MIN_DP:PL 0:42:99:42:0,1195 +chrX 2475175 . T G, 2015.04 . AS_QUALapprox=|2025|0;AS_VarDP=0|45|0;DP=45;QUALapprox=2025;RAW_GT_COUNT=0,0,1;RAW_MQandDP=155596,45;VarDP=45 GT:AD:DP:GQ:PL:SB 1:0,45,0:45:99:2025,0,2025:0,0,21,24 +chrX 2475176 . C G, 2060.04 . AS_QUALapprox=|2070|0;AS_VarDP=0|46|0;DP=46;QUALapprox=2070;RAW_GT_COUNT=0,0,1;RAW_MQandDP=159196,46;VarDP=46 GT:AD:DP:GQ:PL:SB 1:0,46,0:46:99:2070,0,2070:0,0,21,25 +chrX 2475177 . C . . END=2475197 GT:DP:GQ:MIN_DP:PL 0:44:99:44:0,1230 +chrX 2475198 . A G, 2005.04 . AS_QUALapprox=|2015|0;AS_VarDP=0|45|0;DP=45;QUALapprox=2015;RAW_GT_COUNT=0,0,1;RAW_MQandDP=155596,45;VarDP=45 GT:AD:DP:GQ:PL:SB 1:0,45,0:45:99:2015,0,2015:0,0,22,23 +chrX 2475199 . T . . END=2475215 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1646 +chrX 2475216 . T C, 2224.04 . AS_QUALapprox=|2234|0;AS_VarDP=0|51|0;DP=51;QUALapprox=2234;RAW_GT_COUNT=0,0,1;RAW_MQandDP=175987,51;VarDP=51 GT:AD:DP:GQ:PL:SB 1:0,51,0:51:99:2234,0,2234:0,0,24,27 +chrX 2475217 . G . . END=2475241 GT:DP:GQ:MIN_DP:PL 0:44:99:44:0,1315 +chrX 2475242 . TA T, 1633.01 . AS_QUALapprox=|1643|0;AS_VarDP=0|44|0;DP=45;QUALapprox=1643;RAW_GT_COUNT=0,0,1;RAW_MQandDP=160164,45;VarDP=44 GT:AD:DP:GQ:PL:SB 1:0,44,0:44:99:1643,0,1643:0,0,20,24 +chrX 2475244 . A . . END=2475268 GT:DP:GQ:MIN_DP:PL 0:45:99:45:0,1334 +chrX 2475269 . A AC, 1728.01 . AS_QUALapprox=|1738|0;AS_VarDP=0|43|0;DP=44;QUALapprox=1738;RAW_GT_COUNT=0,0,1;RAW_MQandDP=156564,44;VarDP=43 GT:AD:DP:GQ:PL:SB 1:0,43,0:43:99:1738,0,1738:0,0,20,23 +chrX 2475270 . A . . END=2475298 GT:DP:GQ:MIN_DP:PL 0:42:99:42:0,1280 +chrX 2475299 . A G, 1748.04 . AS_QUALapprox=|1758|0;AS_VarDP=0|41|0;DP=42;QUALapprox=1758;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151200,42;VarDP=41 GT:AD:DP:GQ:PL:SB 1:0,41,0:41:99:1758,0,1758:0,0,21,20 +chrX 2475300 . G . . END=2475304 GT:DP:GQ:MIN_DP:PL 0:38:99:38:0,1096 +chrX 2475305 . T C, 1647.04 . AS_QUALapprox=|1657|0;AS_VarDP=0|38|0;DP=40;QUALapprox=1657;RAW_GT_COUNT=0,0,1;RAW_MQandDP=144000,40;VarDP=38 GT:AD:DP:GQ:PL:SB 1:0,38,0:38:99:1657,0,1657:0,0,21,17 +chrX 2475306 . G . . END=2475353 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,1180 +chrX 2475354 . A G, 1884.04 . AS_QUALapprox=|1894|0;AS_VarDP=0|43|0;DP=46;QUALapprox=1894;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;VarDP=43 GT:AD:DP:GQ:PL:SB 1:0,43,0:43:99:1894,0,1894:0,0,17,26 +chrX 2475355 . T . . END=2475359 GT:DP:GQ:MIN_DP:PL 0:41:99:41:0,1280 +chrX 2475360 . A C, 2004.04 . AS_QUALapprox=|2014|0;AS_VarDP=0|45|0;DP=45;QUALapprox=2014;RAW_GT_COUNT=0,0,1;RAW_MQandDP=160704,45;VarDP=45 GT:AD:DP:GQ:PL:SB 1:0,45,0:45:99:2014,0,2014:0,0,19,26 +chrX 2475361 . C . . END=2475394 GT:DP:GQ:MIN_DP:PL 0:46:99:46:0,1359 +chrX 2475395 . A G, 2015.04 . AS_QUALapprox=|2025|0;AS_VarDP=0|45|0;DP=45;QUALapprox=2025;RAW_GT_COUNT=0,0,1;RAW_MQandDP=160704,45;VarDP=45 GT:AD:DP:GQ:PL:SB 1:0,45,0:45:99:2025,0,2025:0,0,23,22 +chrX 2475396 . C . . END=2475398 GT:DP:GQ:MIN_DP:PL 0:42:99:42:0,1430 +chrX 2475399 . AG A, 1880.01 . AS_QUALapprox=|1890|0;AS_VarDP=0|42|0;DP=43;QUALapprox=1890;RAW_GT_COUNT=0,0,1;RAW_MQandDP=153504,43;VarDP=42 GT:AD:DP:GQ:PL:SB 1:0,42,0:42:99:1890,0,1890:0,0,22,20 +chrX 2475401 . G . . END=2475403 GT:DP:GQ:MIN_DP:PL 0:41:99:41:0,1346 +chrX 2475404 . C T, 1870.04 . AS_QUALapprox=|1880|0;AS_VarDP=0|42|0;DP=42;QUALapprox=1880;RAW_GT_COUNT=0,0,1;RAW_MQandDP=149904,42;VarDP=42 GT:AD:DP:GQ:PL:SB 1:0,42,0:42:99:1880,0,1880:0,0,22,20 +chrX 2475405 . C . . END=2475442 GT:DP:GQ:MIN_DP:PL 0:43:99:43:0,1261 +chrX 2475443 . T A, 1927.04 . AS_QUALapprox=|1937|0;AS_VarDP=0|45|0;DP=45;QUALapprox=1937;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162000,45;VarDP=45 GT:AD:DP:GQ:PL:SB 1:0,45,0:45:99:1937,0,1937:0,0,30,15 +chrX 2475444 . G . . END=2475454 GT:DP:GQ:MIN_DP:PL 0:42:99:42:0,1345 +chrX 2475455 . C A, 1848.04 . AS_QUALapprox=|1858|0;AS_VarDP=0|42|0;DP=43;QUALapprox=1858;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154800,43;VarDP=42 GT:AD:DP:GQ:PL:SB 1:0,42,0:42:99:1858,0,1858:0,0,28,14 +chrX 2475456 . C . . END=2475490 GT:DP:GQ:MIN_DP:PL 0:42:99:42:0,1269 +chrX 2475491 . A G, 1836.04 . AS_QUALapprox=|1846|0;AS_VarDP=0|43|0;DP=44;QUALapprox=1846;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158400,44;VarDP=43 GT:AD:DP:GQ:PL:SB 1:0,43,0:43:99:1846,0,1846:0,0,27,16 +chrX 2475492 . T . . END=2475493 GT:DP:GQ:MIN_DP:PL 0:43:99:43:0,1339 +chrX 2475494 . G C, 1834.04 . AS_QUALapprox=|1844|0;AS_VarDP=0|42|0;DP=43;QUALapprox=1844;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154800,43;VarDP=42 GT:AD:DP:GQ:PL:SB 1:0,42,0:42:99:1844,0,1844:0,0,27,15 +chrX 2475495 . G . . END=2475563 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,580 +chrX 2475564 . G T, 1477.04 . AS_QUALapprox=|1487|0;AS_VarDP=1|46|0;BaseQRankSum=2.537;DP=64;MQRankSum=0.000;QUALapprox=1487;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230049,64;ReadPosRankSum=0.922;VarDP=47 GT:AD:DP:GQ:PL:SB 1:1,46,0:47:99:1487,0,1913:0,1,24,22 +chrX 2475565 . G . . END=2476239 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,442 +chrX 2476240 . A AC, 1689.01 . AS_QUALapprox=|1699|0;AS_VarDP=1|58|0;BaseQRankSum=-0.294;DP=66;MQRankSum=0.000;QUALapprox=1699;RAW_GT_COUNT=0,0,1;RAW_MQandDP=236341,66;ReadPosRankSum=-0.642;VarDP=59 GT:AD:DP:GQ:PL:SB 1:1,58,0:59:99:1699,0,1941:0,1,24,29 +chrX 2476241 . A . . END=2476641 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1564 +chrX 2476642 . A G, 2246.04 . AS_QUALapprox=|2256|0;AS_VarDP=0|73|0;DP=76;QUALapprox=2256;RAW_GT_COUNT=0,0,1;RAW_MQandDP=273600,76;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,73,0:73:99:2256,0,2256:0,0,41,32 +chrX 2476643 . A . . END=2477279 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1504 +chrX 2477280 . C G, 1697.04 . AS_QUALapprox=|1707|0;AS_VarDP=6|61|0;BaseQRankSum=-0.756;DP=67;MQRankSum=8.135;QUALapprox=1707;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226534,67;ReadPosRankSum=-2.153;VarDP=67 GT:AD:DP:GQ:PL:SB 1:6,61,0:67:99:1707,0,1884:6,0,36,25 +chrX 2477281 . T . . END=2477454 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1474 +chrX 2477455 . G A, 1546.04 . AS_QUALapprox=|1556|0;AS_VarDP=8|53|0;BaseQRankSum=1.553;DP=62;MQRankSum=6.598;QUALapprox=1556;RAW_GT_COUNT=0,0,1;RAW_MQandDP=209170,62;ReadPosRankSum=-1.133;VarDP=61 GT:AD:DP:GQ:PL:SB 1:8,53,0:61:99:1556,0,1802:4,4,30,23 +chrX 2477456 . T . . END=2478088 GT:DP:GQ:MIN_DP:PL 0:80:99:80:0,165 +chrX 2478089 . C . . END=2478089 GT:DP:GQ:MIN_DP:PL 0:91:10:91:0,10 +chrX 2478090 . A . . END=2478194 GT:DP:GQ:MIN_DP:PL 0:94:99:94:0,924 +chrX 2478195 . C G, 3104.04 . AS_QUALapprox=|3114|0;AS_VarDP=0|87|0;DP=90;QUALapprox=3114;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226885,90;VarDP=87 GT:AD:DP:GQ:PL:SB 1:0,87,0:87:99:3114,0,3114:0,0,30,57 +chrX 2478196 . A . . END=2478225 GT:DP:GQ:MIN_DP:PL 0:84:99:84:0,1315 +chrX 2478226 . G C, 2981.04 . AS_QUALapprox=|2991|0;AS_VarDP=0|85|0;DP=89;QUALapprox=2991;RAW_GT_COUNT=0,0,1;RAW_MQandDP=225622,89;VarDP=85 GT:AD:DP:GQ:PL:SB 1:0,85,0:85:99:2991,0,2991:0,0,31,54 +chrX 2478227 . G . . END=2478608 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1146 +chrX 2478609 . C CATGTGGCCCTGGGACATCCACAGTGTACACACTGAAGACATTCCCTAAGA, 2943.01 . AS_QUALapprox=|2953|0;AS_VarDP=0|68|0;DP=81;QUALapprox=2953;RAW_GT_COUNT=0,0,1;RAW_MQandDP=284627,81;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,68,0:68:99:2953,0,3096:0,0,36,32 +chrX 2478610 . A . . END=2478652 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1251 +chrX 2478653 . A G, 1625.04 . AS_QUALapprox=|1635|0;AS_VarDP=0|52|0;DP=62;QUALapprox=1635;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:1635,0,2032:0,0,28,24 +chrX 2478654 . C . . END=2478741 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1151 +chrX 2478742 . C T, 1960.04 . AS_QUALapprox=|1970|0;AS_VarDP=0|59|0;DP=59;QUALapprox=1970;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:1970,0,1970:0,0,28,31 +chrX 2478743 . A . . END=2478805 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1799 +chrX 2478806 . G A, 2238.04 . AS_QUALapprox=|2248|0;AS_VarDP=0|69|0;DP=69;QUALapprox=2248;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,69,0:69:99:2248,0,2248:0,0,32,37 +chrX 2478807 . G . . END=2478879 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1800 +chrX 2478880 . G C, 2485.04 . AS_QUALapprox=|2495|0;AS_VarDP=0|79|0;DP=81;QUALapprox=2495;RAW_GT_COUNT=0,0,1;RAW_MQandDP=291600,81;VarDP=79 GT:AD:DP:GQ:PL:SB 1:0,79,0:79:99:2495,0,2495:0,0,46,33 +chrX 2478881 . A . . END=2478958 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1731 +chrX 2478959 . C G, 2029.04 . AS_QUALapprox=|2039|0;AS_VarDP=0|62|0;DP=63;QUALapprox=2039;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223600,63;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:2039,0,2039:0,0,36,26 +chrX 2478960 . A . . END=2479021 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1757 +chrX 2479022 . T A, 213.04 . AS_QUALapprox=|223|0;AS_VarDP=24|30|0;BaseQRankSum=0.464;DP=59;MQRankSum=0.000;QUALapprox=223;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;ReadPosRankSum=-0.026;VarDP=54 GT:AD:DP:GQ:PL:SB 1:24,30,0:54:99:223,0,977:12,12,17,13 +chrX 2479023 . C . . END=2479036 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1723 +chrX 2479037 . G A, 2261.04 . AS_QUALapprox=|2271|0;AS_VarDP=0|60|0;DP=63;QUALapprox=2271;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:2271,0,2271:0,0,29,31 +chrX 2479038 . T . . END=2479360 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,862 +chrX 2479361 . C A, 1379.04 . AS_QUALapprox=|1389|0;AS_VarDP=0|43|0;DP=59;QUALapprox=1389;RAW_GT_COUNT=0,0,1;RAW_MQandDP=210608,59;VarDP=43 GT:AD:DP:GQ:PL:SB 1:0,43,0:43:99:1389,0,1707:0,0,15,28 +chrX 2479362 . G . . END=2479862 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,611 +chrX 2479863 . G T, 1846.04 . AS_QUALapprox=|1856|0;AS_VarDP=4|61|0;BaseQRankSum=3.841;DP=68;MQRankSum=0.000;QUALapprox=1856;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;ReadPosRankSum=-0.819;VarDP=65 GT:AD:DP:GQ:PL:SB 1:4,61,0:65:99:1856,0,1909:0,4,33,28 +chrX 2479864 . T . . END=2480020 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1781 +chrX 2480021 . G A, 2079.04 . AS_QUALapprox=|2089|0;AS_VarDP=0|63|0;DP=64;QUALapprox=2089;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,63,0:63:99:2089,0,2089:0,0,34,29 +chrX 2480022 . C . . END=2480075 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1800 +chrX 2480076 . GC G, 2420.01 . AS_QUALapprox=|2430|0;AS_VarDP=1|66|0;BaseQRankSum=-0.427;DP=71;MQRankSum=0.000;QUALapprox=2430;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;ReadPosRankSum=1.423;VarDP=67 GT:AD:DP:GQ:PL:SB 1:1,66,0:67:99:2430,0,2468:0,1,42,24 +chrX 2480078 . C . . END=2480288 GT:DP:GQ:MIN_DP:PL 0:84:99:84:0,1800 +chrX 2480289 . G A, 1555.04 . AS_QUALapprox=|1565|0;AS_VarDP=14|60|0;BaseQRankSum=0.105;DP=75;MQRankSum=4.456;QUALapprox=1565;RAW_GT_COUNT=0,0,1;RAW_MQandDP=227740,75;ReadPosRankSum=2.478;VarDP=74 GT:AD:DP:GQ:PL:SB 1:14,60,0:74:99:1565,0,2006:2,12,27,33 +chrX 2480290 . T . . END=2480515 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1800 +chrX 2480516 . TAA T,TA, 1348.01 . AS_QUALapprox=|0|1358|0;AS_VarDP=1|2|56|0;BaseQRankSum=-0.515;DP=79;MQRankSum=0.000;QUALapprox=1358;RAW_GT_COUNT=0,0,1;RAW_MQandDP=284400,79;ReadPosRankSum=0.088;VarDP=59 GT:AD:DP:GQ:PL:SB 2:1,2,56,0:59:99:1358,1534,0,1482:1,0,32,26 +chrX 2480519 . A . . END=2481095 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1800 +chrX 2481096 . T C, 1984.04 . AS_QUALapprox=|1994|0;AS_VarDP=0|63|0;DP=67;QUALapprox=1994;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,63,0:63:99:1994,0,1994:0,0,31,32 +chrX 2481097 . T . . END=2481161 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1800 +chrX 2481162 . C T, 2421.04 . AS_QUALapprox=|2431|0;AS_VarDP=0|74|0;DP=78;QUALapprox=2431;RAW_GT_COUNT=0,0,1;RAW_MQandDP=280800,78;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,74,0:74:99:2431,0,2431:0,0,33,41 +chrX 2481163 . G . . END=2481436 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1800 +chrX 2481437 . G A, 2123.04 . AS_QUALapprox=|2133|0;AS_VarDP=0|65|0;DP=66;QUALapprox=2133;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234710,66;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,65,0:65:99:2133,0,2133:0,0,27,38 +chrX 2481438 . G . . END=2481778 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1696 +chrX 2481779 . T C, 1911.04 . AS_QUALapprox=|1921|0;AS_VarDP=0|63|0;DP=65;QUALapprox=1921;RAW_GT_COUNT=0,0,1;RAW_MQandDP=192994,65;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,63,0:63:99:1921,0,1921:0,0,36,27 +chrX 2481780 . G . . END=2481814 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1800 +chrX 2481815 . C T, 2501.04 . AS_QUALapprox=|2511|0;AS_VarDP=0|58|0;DP=58;QUALapprox=2511;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169722,58;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,58,0:58:99:2511,0,2511:0,0,31,27 +chrX 2481816 . C . . END=2481826 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1788 +chrX 2481827 . AC A, 2456.01 . AS_QUALapprox=|2466|0;AS_VarDP=0|56|0;DP=57;QUALapprox=2466;RAW_GT_COUNT=0,0,1;RAW_MQandDP=164772,57;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,56,0:56:99:2466,0,2466:0,0,30,26 +chrX 2481829 . C . . END=2482035 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,1184 +chrX 2482036 . T C, 1311.04 . AS_QUALapprox=|1321|0;AS_VarDP=0|40|0;DP=40;QUALapprox=1321;RAW_GT_COUNT=0,0,1;RAW_MQandDP=54326,40;VarDP=40 GT:AD:DP:GQ:PL:SB 1:0,40,0:40:99:1321,0,1321:0,0,14,26 +chrX 2482037 . T . . END=2482128 GT:DP:GQ:MIN_DP:PL 0:41:99:41:0,1052 +chrX 2482129 . C CTTT, 1457.01 . AS_QUALapprox=|1467|0;AS_VarDP=0|38|0;DP=50;QUALapprox=1467;RAW_GT_COUNT=0,0,1;RAW_MQandDP=102493,50;VarDP=38 GT:AD:DP:GQ:PL:SB 1:0,38,0:38:99:1467,0,1468:0,0,18,20 +chrX 2482130 . T . . END=2482578 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,814 +chrX 2482579 . T A, 1923.04 . AS_QUALapprox=|1933|0;AS_VarDP=0|58|0;DP=59;QUALapprox=1933;RAW_GT_COUNT=0,0,1;RAW_MQandDP=211936,59;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,58,0:58:99:1933,0,1933:0,0,28,30 +chrX 2482580 . A . . END=2482615 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1766 +chrX 2482616 . T C, 1985.04 . AS_QUALapprox=|1995|0;AS_VarDP=1|61|0;BaseQRankSum=-0.272;DP=64;MQRankSum=0.000;QUALapprox=1995;RAW_GT_COUNT=0,0,1;RAW_MQandDP=228321,64;ReadPosRankSum=1.537;VarDP=62 GT:AD:DP:GQ:PL:SB 1:1,61,0:62:99:1995,0,2030:1,0,35,26 +chrX 2482617 . C . . END=2482793 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1800 +chrX 2482794 . G A, 1895.04 . AS_QUALapprox=|1905|0;AS_VarDP=0|58|0;DP=60;QUALapprox=1905;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176778,60;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,58,0:58:99:1905,0,1905:0,0,27,31 +chrX 2482795 . G . . END=2483327 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1260 +chrX 2483328 . T G, 1851.04 . AS_QUALapprox=|1861|0;AS_VarDP=0|57|0;DP=61;QUALapprox=1861;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:1861,0,1861:0,0,28,29 +chrX 2483329 . T . . END=2483423 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1797 +chrX 2483424 . T A, 1854.04 . AS_QUALapprox=|1864|0;AS_VarDP=0|56|0;DP=59;QUALapprox=1864;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,56,0:56:99:1864,0,1864:0,0,34,22 +chrX 2483425 . G . . END=2483788 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1533 +chrX 2483789 . CAAAAA C, 2060.01 . AS_QUALapprox=|2070|0;AS_VarDP=1|48|0;DP=64;MQRankSum=0.000;QUALapprox=2070;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=49 GT:AD:DP:GQ:PL:SB 1:1,48,0:49:99:2070,0,2091:0,1,22,26 +chrX 2483795 . A . . END=2483830 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1607 +chrX 2483831 . G C, 2718.04 . AS_QUALapprox=|2728|0;AS_VarDP=0|63|0;DP=65;QUALapprox=2728;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,63,0:63:99:2728,0,2728:0,0,32,31 +chrX 2483832 . G . . END=2483852 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1800 +chrX 2483853 . C T, 2995.04 . AS_QUALapprox=|3005|0;AS_VarDP=0|67|0;DP=67;QUALapprox=3005;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,67,0:67:99:3005,0,3005:0,0,37,30 +chrX 2483854 . A . . END=2483875 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1800 +chrX 2483876 . G A, 3005.04 . AS_QUALapprox=|3015|0;AS_VarDP=0|67|0;DP=67;QUALapprox=3015;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,67,0:67:99:3015,0,3015:0,0,38,29 +chrX 2483877 . T . . END=2483878 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1800 +chrX 2483879 . C A, 2960.04 . AS_QUALapprox=|2970|0;AS_VarDP=0|66|0;DP=67;QUALapprox=2970;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=66 GT:AD:DP:GQ:PL:SB 1:0,66,0:66:99:2970,0,2970:0,0,38,28 +chrX 2483880 . A . . END=2484014 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1800 +chrX 2484015 . G A, 1996.04 . AS_QUALapprox=|2006|0;AS_VarDP=0|60|0;DP=62;QUALapprox=2006;RAW_GT_COUNT=0,0,1;RAW_MQandDP=222050,62;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:2006,0,2006:0,0,31,29 +chrX 2484016 . C . . END=2484110 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1800 +chrX 2484111 . T G, 2173.04 . AS_QUALapprox=|2183|0;AS_VarDP=0|67|0;DP=69;QUALapprox=2183;RAW_GT_COUNT=0,0,1;RAW_MQandDP=246566,69;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,67,0:67:99:2183,0,2183:0,0,34,33 +chrX 2484112 . A . . END=2484262 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1568 +chrX 2484263 . A G, 1786.04 . AS_QUALapprox=|1796|0;AS_VarDP=0|55|0;DP=57;QUALapprox=1796;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:1796,0,1796:0,0,25,30 +chrX 2484264 . C . . END=2484842 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1101 +chrX 2484843 . C T, 32.04 . AS_QUALapprox=|42|0;AS_VarDP=27|28|0;BaseQRankSum=0.692;DP=57;MQRankSum=0.000;QUALapprox=42;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;ReadPosRankSum=-0.034;VarDP=55 GT:AD:DP:GQ:PL:SB 1:27,28,0:55:42:42,0,917:11,16,16,12 +chrX 2484844 . C . . END=2484903 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1471 +chrX 2484904 . A G, 2128.04 . AS_QUALapprox=|2138|0;AS_VarDP=0|65|0;DP=66;QUALapprox=2138;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,65,0:65:99:2138,0,2138:0,0,27,38 +chrX 2484905 . C . . END=2485642 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,555 +chrX 2485643 . A . . END=2485643 GT:DP:GQ:MIN_DP:PL 0:27:6:27:0,6 +chrX 2485644 . G . . END=2485728 GT:DP:GQ:MIN_DP:PL 0:20:99:20:0,158 +chrX 2485729 . G A, 237.04 . AS_QUALapprox=|247|0;AS_VarDP=2|10|0;DP=15;QUALapprox=247;RAW_GT_COUNT=0,0,1;RAW_MQandDP=52081,15;VarDP=12 GT:AD:DP:GQ:PL:SB 1:2,10,0:12:99:247,0,348:0,0,6,4 +chrX 2485730 . A . . END=2487000 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,192 +chrX 2487001 . T C, 255.04 . AS_QUALapprox=|265|0;AS_VarDP=27|35|0;BaseQRankSum=-0.321;DP=64;MQRankSum=0.000;QUALapprox=265;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;ReadPosRankSum=0.128;VarDP=62 GT:AD:DP:GQ:PL:SB 1:27,35,0:62:99:265,0,1136:11,16,17,18 +chrX 2487002 . C . . END=2488488 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,437 +chrX 2488489 . A G, 346.04 . AS_QUALapprox=|356|0;AS_VarDP=23|37|0;BaseQRankSum=-2.488;DP=63;MQRankSum=0.000;QUALapprox=356;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;ReadPosRankSum=-0.373;VarDP=60 GT:AD:DP:GQ:PL:SB 1:23,37,0:60:99:356,0,1119:11,12,14,23 +chrX 2488490 . A . . END=2491076 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,580 +chrX 2491077 . T TG, 30.01 . AS_QUALapprox=|40|0;AS_VarDP=25|23|0;BaseQRankSum=-1.252;DP=53;MQRankSum=1.033;QUALapprox=40;RAW_GT_COUNT=0,0,1;RAW_MQandDP=186380,53;ReadPosRankSum=1.166;VarDP=48 GT:AD:DP:GQ:PL:SB 1:25,23,0:48:40:40,0,812:11,14,10,13 +chrX 2491078 . T . . END=2491446 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,1100 +chrX 2491447 . T C, 2415.04 . AS_QUALapprox=|2425|0;AS_VarDP=0|76|0;DP=79;QUALapprox=2425;RAW_GT_COUNT=0,0,1;RAW_MQandDP=283250,79;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,76,0:76:99:2425,0,2425:0,0,39,37 +chrX 2491448 . G . . END=2498624 GT:DP:GQ:MIN_DP:PL 0:68:23:57:0,23 +chrX 2498625 . G GA, 112.01 . AS_QUALapprox=|122|0;AS_VarDP=16|24|0;BaseQRankSum=-1.268;DP=56;MQRankSum=0.000;QUALapprox=122;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;ReadPosRankSum=-0.456;VarDP=40 GT:AD:DP:GQ:PL:SB 1:16,24,0:40:99:122,0,472:9,7,9,15 +chrX 2498626 . A . . END=2500641 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,124 +chrX 2500642 . A AG, 1059.01 . AS_QUALapprox=|1069|0;AS_VarDP=0|27|0;DP=29;QUALapprox=1069;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:1069,0,1069:0,0,8,19 +chrX 2500643 . G . . END=2500663 GT:DP:GQ:MIN_DP:PL 0:26:46:22:0,46 +chrX 2500664 . C . . END=2500664 GT:DP:GQ:MIN_DP:PL 0:21:13:21:0,13 +chrX 2500665 . A . . END=2501226 GT:DP:GQ:MIN_DP:PL 0:46:99:46:0,331 +chrX 2501227 . C G, 0.01 . AS_QUALapprox=|1|0;AS_VarDP=6|7|0;BaseQRankSum=-1.105;DP=15;MQRankSum=0.000;QUALapprox=1;RAW_GT_COUNT=0,0,1;RAW_MQandDP=54000,15;ReadPosRankSum=-0.978;VarDP=13 GT:AD:DP:GQ:PL:SB 1:6,7,0:13:1:1,0,207:1,5,1,6 +chrX 2501228 . C . . END=2501819 GT:DP:GQ:MIN_DP:PL 0:39:99:39:0,272 +chrX 2501820 . C G, 312.04 . AS_QUALapprox=|322|0;AS_VarDP=11|22|0;BaseQRankSum=-1.225;DP=36;MQRankSum=0.000;QUALapprox=322;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129600,36;ReadPosRankSum=0.745;VarDP=33 GT:AD:DP:GQ:PL:SB 1:11,22,0:33:99:322,0,704:5,6,11,11 +chrX 2501821 . A . . END=2502350 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,871 +chrX 2502351 . C G, 337.04 . AS_QUALapprox=|347|0;AS_VarDP=17|29|0;BaseQRankSum=-1.317;DP=46;MQRankSum=0.000;QUALapprox=347;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;ReadPosRankSum=-1.287;VarDP=46 GT:AD:DP:GQ:PL:SB 1:17,29,0:46:99:347,0,903:9,8,16,13 +chrX 2502352 . C . . END=2503034 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,219 +chrX 2503035 . A T, 471.04 . AS_QUALapprox=|481|0;AS_VarDP=30|40|0;BaseQRankSum=1.281;DP=72;MQRankSum=0.000;QUALapprox=481;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;ReadPosRankSum=-0.705;VarDP=70 GT:AD:DP:GQ:PL:SB 1:30,40,0:70:99:481,0,1799:13,17,22,18 +chrX 2503036 . T . . END=2503036 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1800 +chrX 2503037 . G T, 471.04 . AS_QUALapprox=|481|0;AS_VarDP=30|40|0;BaseQRankSum=0.150;DP=71;MQRankSum=0.000;QUALapprox=481;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;ReadPosRankSum=-0.600;VarDP=70 GT:AD:DP:GQ:PL:SB 1:30,40,0:70:99:481,0,1799:13,17,22,18 +chrX 2503038 . G . . END=2503228 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1800 +chrX 2503229 . CT C, 308.01 . AS_QUALapprox=|318|0;AS_VarDP=16|29|0;BaseQRankSum=1.165;DP=56;MQRankSum=0.000;QUALapprox=318;RAW_GT_COUNT=0,0,1;RAW_MQandDP=196468,56;ReadPosRankSum=-1.507;VarDP=45 GT:AD:DP:GQ:PL:SB 1:16,29,0:45:99:318,0,711:6,10,9,20 +chrX 2503231 . T . . END=2503268 GT:DP:GQ:MIN_DP:PL 0:47:99:47:0,1301 +chrX 2503269 . T C, 349.04 . AS_QUALapprox=|359|0;AS_VarDP=17|29|0;BaseQRankSum=-1.091;DP=47;MQRankSum=0.000;QUALapprox=359;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;ReadPosRankSum=0.250;VarDP=46 GT:AD:DP:GQ:PL:SB 1:17,29,0:46:99:359,0,940:8,9,10,19 +chrX 2503270 . A . . END=2503509 GT:DP:GQ:MIN_DP:PL 0:47:99:47:0,1181 +chrX 2503510 . A G, 129.04 . AS_QUALapprox=|139|0;AS_VarDP=24|28|0;BaseQRankSum=0.250;DP=52;MQRankSum=0.000;QUALapprox=139;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;ReadPosRankSum=-0.285;VarDP=52 GT:AD:DP:GQ:PL:SB 1:24,28,0:52:99:139,0,933:10,14,17,11 +chrX 2503511 . G . . END=2504018 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1260 +chrX 2504019 . C . . END=2504038 GT:DP:GQ:MIN_DP:PL 0:70:0:70:0,0 +chrX 2504039 . A . . END=2504041 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1800 +chrX 2504042 . TAA T, 228.01 . AS_QUALapprox=|238|0;AS_VarDP=33|38|0;BaseQRankSum=0.047;DP=74;MQRankSum=0.000;QUALapprox=238;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;ReadPosRankSum=-0.133;VarDP=71 GT:AD:DP:GQ:PL:SB 1:33,38,0:71:99:238,0,1711:13,20,23,15 +chrX 2504045 . G GT, 228.01 . AS_QUALapprox=|238|0;AS_VarDP=33|38|0;BaseQRankSum=-0.753;DP=75;MQRankSum=0.000;QUALapprox=238;RAW_GT_COUNT=0,0,1;RAW_MQandDP=270000,75;ReadPosRankSum=0.254;VarDP=71 GT:AD:DP:GQ:PL:SB 1:33,38,0:71:99:238,0,1711:13,20,23,15 +chrX 2504046 . A . . END=2504075 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1643 +chrX 2504076 . C CCTCAGGTGTGGCCAGGTGTG, 471.01 . AS_QUALapprox=|481|0;AS_VarDP=21|32|0;BaseQRankSum=-0.220;DP=61;MQRankSum=0.000;QUALapprox=481;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;ReadPosRankSum=-0.300;VarDP=53 GT:AD:DP:GQ:PL:SB 1:21,32,0:53:99:481,0,1429:7,14,17,15 +chrX 2504077 . C . . END=2504104 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1777 +chrX 2504105 . G A, 69.04 . AS_QUALapprox=|79|0;AS_VarDP=28|33|0;BaseQRankSum=-2.025;DP=62;MQRankSum=0.000;QUALapprox=79;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;ReadPosRankSum=0.695;VarDP=61 GT:AD:DP:GQ:PL:SB 1:28,33,0:61:79:79,0,1006:12,16,14,19 +chrX 2504106 . T . . END=2504266 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1654 +chrX 2504267 . A G, 297.04 . AS_QUALapprox=|307|0;AS_VarDP=24|34|0;BaseQRankSum=-0.479;DP=60;MQRankSum=0.000;QUALapprox=307;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;ReadPosRankSum=0.490;VarDP=58 GT:AD:DP:GQ:PL:SB 1:24,34,0:58:99:307,0,1092:9,15,17,17 +chrX 2504268 . T . . END=2504741 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1745 +chrX 2504742 . C A,CA, 221.01 . AS_QUALapprox=|0|231|0;AS_VarDP=19|3|24|0;BaseQRankSum=-0.421;DP=58;MQRankSum=0.000;QUALapprox=231;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;ReadPosRankSum=-0.212;VarDP=46 GT:AD:DP:GQ:PL:SB 2:19,3,24,0:46:99:231,1365,0,1076:9,10,14,13 +chrX 2504743 . A . . END=2504899 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1800 +chrX 2504900 . C A, 41.04 . AS_QUALapprox=|51|0;AS_VarDP=29|30|0;BaseQRankSum=0.115;DP=61;MQRankSum=0.000;QUALapprox=51;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;ReadPosRankSum=0.038;VarDP=59 GT:AD:DP:GQ:PL:SB 1:29,30,0:59:51:51,0,1002:13,16,15,15 +chrX 2504901 . C . . END=2505690 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1286 +chrX 2505691 . T C, 0.89 . AS_QUALapprox=|10|0;AS_VarDP=43|39|0;BaseQRankSum=2.866;DP=85;MQRankSum=0.977;QUALapprox=10;RAW_GT_COUNT=0,0,1;RAW_MQandDP=303194,85;ReadPosRankSum=2.099;VarDP=82 GT:AD:DP:GQ:PL:SB 1:43,39,0:82:10:10,0,1284:23,20,19,20 +chrX 2505692 . G . . END=2506391 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1502 +chrX 2506392 . C T, 263.04 . AS_QUALapprox=|273|0;AS_VarDP=18|25|0;BaseQRankSum=0.887;DP=48;MQRankSum=0.000;QUALapprox=273;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;ReadPosRankSum=0.000;VarDP=43 GT:AD:DP:GQ:PL:SB 1:18,25,0:43:99:273,0,869:7,11,16,9 +chrX 2506393 . G . . END=2507063 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1449 +chrX 2507064 . CAAAT C, 116.01 . AS_QUALapprox=|126|0;AS_VarDP=15|18|0;BaseQRankSum=0.251;DP=56;MQRankSum=0.000;QUALapprox=126;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201025,56;ReadPosRankSum=-0.931;VarDP=33 GT:AD:DP:GQ:PL:SB 1:15,18,0:33:99:126,0,801:7,8,10,8 +chrX 2507069 . A . . END=2509268 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1089 +chrX 2509269 . C T, 400.04 . AS_QUALapprox=|410|0;AS_VarDP=23|31|0;BaseQRankSum=-1.552;DP=55;MQRankSum=0.000;QUALapprox=410;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;ReadPosRankSum=-0.903;VarDP=54 GT:AD:DP:GQ:PL:SB 1:23,31,0:54:99:410,0,1384:14,9,24,7 +chrX 2509270 . A . . END=2509284 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,1707 +chrX 2509285 . A G, 480.04 . AS_QUALapprox=|490|0;AS_VarDP=25|35|0;BaseQRankSum=-1.115;DP=63;MQRankSum=-0.811;QUALapprox=490;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226336,63;ReadPosRankSum=1.088;VarDP=60 GT:AD:DP:GQ:PL:SB 1:25,35,0:60:99:490,0,1523:12,13,25,10 +chrX 2509286 . T . . END=2509344 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1510 +chrX 2509345 . AC A, 291.01 . AS_QUALapprox=|301|0;AS_VarDP=22|30|0;BaseQRankSum=2.291;DP=52;MQRankSum=-0.817;QUALapprox=301;RAW_GT_COUNT=0,0,1;RAW_MQandDP=186736,52;ReadPosRankSum=0.352;VarDP=52 GT:AD:DP:GQ:PL:SB 1:22,30,0:52:99:301,0,1123:9,13,16,14 +chrX 2509347 . C . . END=2509430 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,1190 +chrX 2509431 . T TAAA, 441.01 . AS_QUALapprox=|451|0;AS_VarDP=13|27|0;BaseQRankSum=-1.196;DP=66;MQRankSum=-0.641;QUALapprox=451;RAW_GT_COUNT=0,0,1;RAW_MQandDP=229746,66;ReadPosRankSum=-1.124;VarDP=40 GT:AD:DP:GQ:PL:SB 1:13,27,0:40:99:451,0,950:8,5,7,20 +chrX 2509432 . A . . END=2510499 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,143 +chrX 2510500 . A G, 173.04 . AS_QUALapprox=|183|0;AS_VarDP=29|35|0;BaseQRankSum=-0.089;DP=69;MQRankSum=1.130;QUALapprox=183;RAW_GT_COUNT=0,0,1;RAW_MQandDP=247825,69;ReadPosRankSum=0.425;VarDP=64 GT:AD:DP:GQ:PL:SB 1:29,35,0:64:99:183,0,1151:11,18,14,21 +chrX 2510501 . T . . END=2514118 GT:DP:GQ:MIN_DP:PL 0:64:89:64:0,89 +chrX 2514119 . TAAAAAAAAAAA T, 848.01 . AS_QUALapprox=|858|0;AS_VarDP=14|33|0;BaseQRankSum=-1.444;DP=58;MQRankSum=0.000;QUALapprox=858;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;ReadPosRankSum=-0.308;VarDP=47 GT:AD:DP:GQ:PL:SB 1:14,33,0:47:99:858,0,1488:9,5,20,13 +chrX 2514131 . A . . END=2516487 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,286 +chrX 2516488 . CA C, 1762.01 . AS_QUALapprox=|1772|0;AS_VarDP=2|44|0;BaseQRankSum=2.293;DP=59;MQRankSum=-0.315;QUALapprox=1772;RAW_GT_COUNT=0,0,1;RAW_MQandDP=209706,59;ReadPosRankSum=0.986;VarDP=46 GT:AD:DP:GQ:PL:SB 1:2,44,0:46:99:1772,0,1795:2,0,21,23 +chrX 2516490 . A . . END=2516501 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,1519 +chrX 2516502 . CA C, 1899.01 . AS_QUALapprox=|1909|0;AS_VarDP=2|48|0;BaseQRankSum=2.285;DP=51;MQRankSum=-0.301;QUALapprox=1909;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180906,51;ReadPosRankSum=0.223;VarDP=50 GT:AD:DP:GQ:PL:SB 1:2,48,0:50:99:1909,0,1933:2,0,23,25 +chrX 2516504 . A . . END=2517656 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,169 +chrX 2517657 . CA C, 935.01 . AS_QUALapprox=|945|0;AS_VarDP=0|37|0;DP=51;QUALapprox=945;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176702,51;VarDP=37 GT:AD:DP:GQ:PL:SB 1:0,37,0:37:99:945,0,945:0,0,15,22 +chrX 2517659 . A . . END=2517672 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,1484 +chrX 2517673 . A G, 1934.04 . AS_QUALapprox=|1944|0;AS_VarDP=0|48|0;DP=53;QUALapprox=1944;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183902,53;VarDP=48 GT:AD:DP:GQ:PL:SB 1:0,48,0:48:99:1944,0,1944:0,0,22,26 +chrX 2517674 . A . . END=2517894 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1501 +chrX 2517895 . T G, 1193.04 . AS_QUALapprox=|1203|0;AS_VarDP=0|42|0;DP=46;QUALapprox=1203;RAW_GT_COUNT=0,0,1;RAW_MQandDP=163369,46;VarDP=42 GT:AD:DP:GQ:PL:SB 1:0,42,0:42:99:1203,0,1203:0,0,14,28 +chrX 2517896 . T . . END=2517948 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,883 +chrX 2517949 . C T, 1257.04 . AS_QUALapprox=|1267|0;AS_VarDP=1|37|0;BaseQRankSum=4.477;DP=40;MQRankSum=0.000;QUALapprox=1267;RAW_GT_COUNT=0,0,1;RAW_MQandDP=144000,40;ReadPosRankSum=-1.277;VarDP=38 GT:AD:DP:GQ:PL:SB 1:1,37,0:38:99:1267,0,1276:0,1,6,31 +chrX 2517950 . C . . END=2518161 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1510 +chrX 2518162 . C G, 1896.04 . AS_QUALapprox=|1906|0;AS_VarDP=0|58|0;DP=63;QUALapprox=1906;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,58,0:58:99:1906,0,1906:0,0,29,29 +chrX 2518163 . T . . END=2518205 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1800 +chrX 2518206 . G T, 2128.04 . AS_QUALapprox=|2138|0;AS_VarDP=0|64|0;DP=71;QUALapprox=2138;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,64,0:64:99:2138,0,2138:0,0,34,30 +chrX 2518207 . T . . END=2518392 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1800 +chrX 2518393 . C T, 2109.04 . AS_QUALapprox=|2119|0;AS_VarDP=1|66|0;BaseQRankSum=-0.477;DP=69;MQRankSum=0.000;QUALapprox=2119;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;ReadPosRankSum=-0.388;VarDP=67 GT:AD:DP:GQ:PL:SB 1:1,66,0:67:99:2119,0,2154:1,0,33,33 +chrX 2518394 . G . . END=2518728 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,357 +chrX 2518729 . CAAA C, 1863.01 . AS_QUALapprox=|1873|0;AS_VarDP=0|43|0;DP=51;QUALapprox=1873;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180400,51;VarDP=43 GT:AD:DP:GQ:PL:SB 1:0,43,0:43:99:1873,0,1873:0,0,22,21 +chrX 2518733 . A . . END=2518868 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1524 +chrX 2518869 . A G, 1966.04 . AS_QUALapprox=|1976|0;AS_VarDP=0|59|0;DP=65;QUALapprox=1976;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:1976,0,1976:0,0,31,28 +chrX 2518870 . G . . END=2518955 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1800 +chrX 2518956 . T C, 2421.04 . AS_QUALapprox=|2431|0;AS_VarDP=0|77|0;DP=78;QUALapprox=2431;RAW_GT_COUNT=0,0,1;RAW_MQandDP=280800,78;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,77,0:77:99:2431,0,2431:0,0,40,37 +chrX 2518957 . G . . END=2519004 GT:DP:GQ:MIN_DP:PL 0:76:99:76:0,1800 +chrX 2519005 . A G, 2441.04 . AS_QUALapprox=|2451|0;AS_VarDP=0|77|0;DP=79;QUALapprox=2451;RAW_GT_COUNT=0,0,1;RAW_MQandDP=283825,79;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,77,0:77:99:2451,0,2451:0,0,42,35 +chrX 2519006 . C . . END=2519226 GT:DP:GQ:MIN_DP:PL 0:81:99:81:0,1800 +chrX 2519227 . A G, 2615.04 . AS_QUALapprox=|2625|0;AS_VarDP=0|79|0;DP=83;QUALapprox=2625;RAW_GT_COUNT=0,0,1;RAW_MQandDP=298800,83;VarDP=79 GT:AD:DP:GQ:PL:SB 1:0,79,0:79:99:2625,0,2625:0,0,37,42 +chrX 2519228 . C . . END=2519432 GT:DP:GQ:MIN_DP:PL 0:76:99:76:0,1800 +chrX 2519433 . A C, 2766.04 . AS_QUALapprox=|2776|0;AS_VarDP=2|73|0;BaseQRankSum=-0.632;DP=78;MQRankSum=0.000;QUALapprox=2776;RAW_GT_COUNT=0,0,1;RAW_MQandDP=280800,78;ReadPosRankSum=0.850;VarDP=75 GT:AD:DP:GQ:PL:SB 1:2,73,0:75:99:2776,0,2846:1,1,30,43 +chrX 2519434 . C . . END=2519444 GT:DP:GQ:MIN_DP:PL 0:74:99:74:0,1800 +chrX 2519445 . G C, 108.04 . AS_QUALapprox=|118|0;AS_VarDP=36|39|0;BaseQRankSum=0.808;DP=75;MQRankSum=0.000;QUALapprox=118;RAW_GT_COUNT=0,0,1;RAW_MQandDP=270000,75;ReadPosRankSum=-0.620;VarDP=75 GT:AD:DP:GQ:PL:SB 1:36,39,0:75:99:118,0,1295:15,21,14,25 +chrX 2519446 . T . . END=2519687 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1567 +chrX 2519688 . C CTCACTGTCACCATCA, 59.01 . AS_QUALapprox=|69|0;AS_VarDP=8|11|0;BaseQRankSum=-1.497;DP=53;MQRankSum=1.781;QUALapprox=69;RAW_GT_COUNT=0,0,1;RAW_MQandDP=186994,53;ReadPosRankSum=-0.743;VarDP=19 GT:AD:DP:GQ:PL:SB 1:8,11,0:19:69:69,0,455:3,5,5,6 +chrX 2519689 . T . . END=2519769 GT:DP:GQ:MIN_DP:PL 0:27:55:27:0,55 +chrX 2519770 . C . . END=2519781 GT:DP:GQ:MIN_DP:PL 0:25:0:25:0,0 +chrX 2519782 . T . . END=2519951 GT:DP:GQ:MIN_DP:PL 0:27:55:27:0,55 +chrX 2519952 . G A, 290.04 . AS_QUALapprox=|585|0;AS_VarDP=0|25|0;DP=27;QUALapprox=585;RAW_GT_COUNT=0,0,1;RAW_MQandDP=89651,27;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:585,0,595:0,0,8,7 +chrX 2519953 . C . . END=2519964 GT:DP:GQ:MIN_DP:PL 0:24:30:24:0,30 +chrX 2519965 . C . . END=2519967 GT:DP:GQ:MIN_DP:PL 0:22:0:22:0,0 +chrX 2519968 . T . . END=2520062 GT:DP:GQ:MIN_DP:PL 0:39:64:39:0,64 +chrX 2520063 . A C, 906.04 . AS_QUALapprox=|916|0;AS_VarDP=2|33|0;BaseQRankSum=1.000;DP=38;MQRankSum=-0.847;QUALapprox=916;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115580,38;ReadPosRankSum=-0.102;VarDP=35 GT:AD:DP:GQ:PL:SB 1:2,33,0:35:99:916,0,944:1,1,11,22 +chrX 2520064 . T . . END=2520185 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,258 +chrX 2520186 . ATCACCATCATCATCC A, 269.04 . AS_QUALapprox=|344|0;AS_VarDP=2|10|0;DP=21;QUALapprox=344;RAW_GT_COUNT=0,0,1;RAW_MQandDP=43795,21;VarDP=12 GT:AD:DP:GQ:PL:SB 1:2,10,0:12:99:344,0,361:0,0,3,6 +chrX 2520202 . T . . END=2520447 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,99 +chrX 2520448 . T . . END=2520448 GT:DP:GQ:MIN_DP:PL 0:26:0:26:0,0 +chrX 2520449 . C . . END=2520450 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,152 +chrX 2520451 . C . . END=2520451 GT:DP:GQ:MIN_DP:PL 0:30:0:30:0,0 +chrX 2520452 . C . . END=2520453 GT:DP:GQ:MIN_DP:PL 0:37:88:37:0,88 +chrX 2520454 . T . . END=2520454 GT:DP:GQ:MIN_DP:PL 0:34:18:34:0,18 +chrX 2520455 . C . . END=2520455 GT:DP:GQ:MIN_DP:PL 0:39:99:39:0,262 +chrX 2520456 . A . . END=2520456 GT:DP:GQ:MIN_DP:PL 0:36:18:36:0,18 +chrX 2520457 . T . . END=2520458 GT:DP:GQ:MIN_DP:PL 0:40:99:40:0,262 +chrX 2520459 . A . . END=2520459 GT:DP:GQ:MIN_DP:PL 0:36:0:36:0,0 +chrX 2520460 . T . . END=2520672 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,154 +chrX 2520673 . CCAA C, 74.01 . AS_QUALapprox=|84|0;AS_VarDP=24|26|0;BaseQRankSum=-1.904;DP=51;MQRankSum=1.081;QUALapprox=84;RAW_GT_COUNT=0,0,1;RAW_MQandDP=182304,51;ReadPosRankSum=-1.641;VarDP=50 GT:AD:DP:GQ:PL:SB 1:24,26,0:50:84:84,0,1129:13,11,16,10 +chrX 2520677 . C . . END=2520685 GT:DP:GQ:MIN_DP:PL 0:50:46:49:0,46 +chrX 2520686 . T *,C, 4.72 . AS_QUALapprox=|0|1009|0;AS_VarDP=0|24|24|0;DP=49;QUALapprox=1009;RAW_GT_COUNT=0,0,1;RAW_MQandDP=175104,49;VarDP=48 GT:AD:DP:GQ:PL:SB 2:0,24,24,0:48:1:1009,1,0,1045:0,0,28,20 +chrX 2520687 . G . . END=2520687 GT:DP:GQ:MIN_DP:PL 0:46:0:46:0,0 +chrX 2520688 . C . . END=2521084 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1384 +chrX 2521085 . A G, 2365.04 . AS_QUALapprox=|2375|0;AS_VarDP=1|74|0;BaseQRankSum=2.271;DP=77;MQRankSum=0.000;QUALapprox=2375;RAW_GT_COUNT=0,0,1;RAW_MQandDP=277200,77;ReadPosRankSum=0.023;VarDP=75 GT:AD:DP:GQ:PL:SB 1:1,74,0:75:99:2375,0,2384:1,0,41,33 +chrX 2521086 . A . . END=2521160 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1800 +chrX 2521161 . T TA, 2205.01 . AS_QUALapprox=|2215|0;AS_VarDP=0|73|0;DP=78;QUALapprox=2215;RAW_GT_COUNT=0,0,1;RAW_MQandDP=280800,78;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,73,0:73:99:2215,0,2215:0,0,39,34 +chrX 2521162 . A . . END=2521610 GT:DP:GQ:MIN_DP:PL 0:80:99:80:0,1800 +chrX 2521611 . C T, 2427.04 . AS_QUALapprox=|2437|0;AS_VarDP=0|73|0;DP=74;QUALapprox=2437;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,73,0:73:99:2437,0,2437:0,0,33,40 +chrX 2521612 . G . . END=2522038 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1628 +chrX 2522039 . A G, 1679.04 . AS_QUALapprox=|1689|0;AS_VarDP=0|50|0;DP=53;QUALapprox=1689;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,50,0:50:99:1689,0,1689:0,0,29,21 +chrX 2522040 . A . . END=2522129 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,1141 +chrX 2522130 . A AG, 888.01 . AS_QUALapprox=|898|0;AS_VarDP=3|32|0;BaseQRankSum=0.765;DP=52;MQRankSum=0.000;QUALapprox=898;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;ReadPosRankSum=-1.061;VarDP=35 GT:AD:DP:GQ:PL:SB 1:3,32,0:35:99:898,0,957:0,3,21,11 +chrX 2522131 . A . . END=2522131 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,1613 +chrX 2522132 . G GAA,A, 2096.04 . AS_QUALapprox=|1171|2106|0;AS_VarDP=0|3|32|0;DP=51;QUALapprox=2106;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=35 GT:AD:DP:GQ:PL:SB 2:0,3,32,0:35:99:2106,935,0,1808:0,0,21,14 +chrX 2522133 . G . . END=2522544 GT:DP:GQ:MIN_DP:PL 0:73:99:73:0,1209 +chrX 2522545 . G T, 2140.04 . AS_QUALapprox=|2150|0;AS_VarDP=1|70|0;BaseQRankSum=-0.636;DP=73;MQRankSum=0.000;QUALapprox=2150;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;ReadPosRankSum=1.733;VarDP=71 GT:AD:DP:GQ:PL:SB 1:1,70,0:71:99:2150,0,2181:1,0,37,33 +chrX 2522546 . G . . END=2523420 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,327 +chrX 2523421 . T C, 1746.04 . AS_QUALapprox=|1756|0;AS_VarDP=0|55|0;DP=58;QUALapprox=1756;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:1756,0,1756:0,0,25,30 +chrX 2523422 . G . . END=2524314 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1615 +chrX 2524315 . A G, 2158.04 . AS_QUALapprox=|2168|0;AS_VarDP=0|67|0;DP=70;QUALapprox=2168;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,67,0:67:99:2168,0,2168:0,0,28,39 +chrX 2524316 . T . . END=2524429 GT:DP:GQ:MIN_DP:PL 0:75:99:75:0,1800 +chrX 2524430 . A G, 89.04 . AS_QUALapprox=|99|0;AS_VarDP=38|42|0;BaseQRankSum=-1.326;DP=86;MQRankSum=0.000;QUALapprox=99;RAW_GT_COUNT=0,0,1;RAW_MQandDP=309600,86;ReadPosRankSum=0.978;VarDP=80 GT:AD:DP:GQ:PL:SB 1:38,42,0:80:99:99,0,1400:25,13,23,19 +chrX 2524431 . A . . END=2525848 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1452 +chrX 2525849 . C CCCTT, 34.01 . AS_QUALapprox=|44|0;AS_VarDP=26|27|0;BaseQRankSum=0.300;DP=57;MQRankSum=0.000;QUALapprox=44;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;ReadPosRankSum=-0.721;VarDP=53 GT:AD:DP:GQ:PL:SB 1:26,27,0:53:44:44,0,1164:12,14,6,21 +chrX 2525850 . C . . END=2527091 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,109 +chrX 2527092 . G A, 317.04 . AS_QUALapprox=|327|0;AS_VarDP=22|33|0;BaseQRankSum=-1.509;DP=57;MQRankSum=0.000;QUALapprox=327;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;ReadPosRankSum=0.370;VarDP=55 GT:AD:DP:GQ:PL:SB 1:22,33,0:55:99:327,0,1057:11,11,13,20 +chrX 2527093 . C . . END=2528141 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1449 +chrX 2528142 . C T, 566.04 . AS_QUALapprox=|576|0;AS_VarDP=19|35|0;BaseQRankSum=1.737;DP=55;MQRankSum=0.000;QUALapprox=576;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;ReadPosRankSum=-0.018;VarDP=54 GT:AD:DP:GQ:PL:SB 1:19,35,0:54:99:576,0,1207:11,8,19,16 +chrX 2528143 . A . . END=2529178 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,234 +chrX 2529179 . A G, 130.04 . AS_QUALapprox=|140|0;AS_VarDP=34|38|0;BaseQRankSum=0.153;DP=72;MQRankSum=0.000;QUALapprox=140;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;ReadPosRankSum=-0.192;VarDP=72 GT:AD:DP:GQ:PL:SB 1:34,38,0:72:99:140,0,1291:20,14,20,18 +chrX 2529180 . T . . END=2529700 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1762 +chrX 2529701 . C A, 387.04 . AS_QUALapprox=|397|0;AS_VarDP=28|38|0;BaseQRankSum=1.303;DP=67;MQRankSum=0.000;QUALapprox=397;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;ReadPosRankSum=-0.960;VarDP=66 GT:AD:DP:GQ:PL:SB 1:28,38,0:66:99:397,0,1280:5,23,23,15 +chrX 2529702 . A . . END=2530085 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1393 +chrX 2530086 . G A, 84.04 . AS_QUALapprox=|94|0;AS_VarDP=25|29|0;BaseQRankSum=-0.803;DP=57;MQRankSum=0.000;QUALapprox=94;RAW_GT_COUNT=0,0,1;RAW_MQandDP=204625,57;ReadPosRankSum=0.382;VarDP=54 GT:AD:DP:GQ:PL:SB 1:25,29,0:54:94:94,0,917:18,7,14,15 +chrX 2530087 . T . . END=2530300 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1612 +chrX 2530301 . T C, 287.04 . AS_QUALapprox=|297|0;AS_VarDP=29|38|0;BaseQRankSum=-1.272;DP=68;MQRankSum=0.193;QUALapprox=297;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241700,68;ReadPosRankSum=-1.393;VarDP=67 GT:AD:DP:GQ:PL:SB 1:29,38,0:67:99:297,0,1591:19,10,21,17 +chrX 2530302 . G . . END=2530322 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1800 +chrX 2530323 . C G, 98.04 . AS_QUALapprox=|108|0;AS_VarDP=33|36|0;BaseQRankSum=-0.128;DP=72;MQRankSum=0.062;QUALapprox=108;RAW_GT_COUNT=0,0,1;RAW_MQandDP=254616,72;ReadPosRankSum=0.048;VarDP=69 GT:AD:DP:GQ:PL:SB 1:33,36,0:69:99:108,0,1522:21,12,21,15 +chrX 2530324 . T . . END=2530356 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1800 +chrX 2530357 . C . . END=2530357 GT:DP:GQ:MIN_DP:PL 0:73:4:73:0,4 +chrX 2530358 . G . . END=2531305 GT:DP:GQ:MIN_DP:PL 0:60:39:58:0,39 +chrX 2531306 . A G, 44.04 . AS_QUALapprox=|54|0;AS_VarDP=31|33|0;BaseQRankSum=-0.298;DP=68;MQRankSum=0.045;QUALapprox=54;RAW_GT_COUNT=0,0,1;RAW_MQandDP=243434,68;ReadPosRankSum=1.592;VarDP=64 GT:AD:DP:GQ:PL:SB 1:31,33,0:64:54:54,0,1101:10,21,12,21 +chrX 2531307 . G . . END=2532152 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1265 +chrX 2532153 . C CA, 156.01 . AS_QUALapprox=|166|0;AS_VarDP=16|23|0;BaseQRankSum=1.189;DP=53;MQRankSum=0.000;QUALapprox=166;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;ReadPosRankSum=-1.015;VarDP=39 GT:AD:DP:GQ:PL:SB 1:16,23,0:39:99:166,0,560:9,7,12,11 +chrX 2532154 . A . . END=2532597 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1374 +chrX 2532598 . T C, 59.04 . AS_QUALapprox=|69|0;AS_VarDP=28|30|0;BaseQRankSum=-0.157;DP=59;MQRankSum=0.000;QUALapprox=69;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;ReadPosRankSum=-0.936;VarDP=58 GT:AD:DP:GQ:PL:SB 1:28,30,0:58:69:69,0,1327:12,16,15,15 +chrX 2532599 . A . . END=2532600 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1800 +chrX 2532601 . A G, 14.03 . AS_QUALapprox=|24|0;AS_VarDP=29|30|0;BaseQRankSum=-0.797;DP=59;MQRankSum=0.000;QUALapprox=24;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;ReadPosRankSum=-0.136;VarDP=59 GT:AD:DP:GQ:PL:SB 1:29,30,0:59:24:24,0,1327:12,17,15,15 +chrX 2532602 . T . . END=2532622 GT:DP:GQ:MIN_DP:PL 0:57:35:55:0,35 +chrX 2532623 . G GCA, 2236.01 . AS_QUALapprox=|2246|0;AS_VarDP=0|58|0;DP=60;QUALapprox=2246;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,58,0:58:99:2246,0,2246:0,0,27,31 +chrX 2532624 . C . . END=2532798 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1642 +chrX 2532799 . G T, 2088.04 . AS_QUALapprox=|2098|0;AS_VarDP=1|65|0;BaseQRankSum=2.328;DP=67;MQRankSum=0.000;QUALapprox=2098;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;ReadPosRankSum=0.158;VarDP=66 GT:AD:DP:GQ:PL:SB 1:1,65,0:66:99:2098,0,2108:1,0,40,25 +chrX 2532800 . G . . END=2534868 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,422 +chrX 2534869 . C T, 2035.04 . AS_QUALapprox=|2045|0;AS_VarDP=0|62|0;DP=63;QUALapprox=2045;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:2045,0,2045:0,0,34,28 +chrX 2534870 . G . . END=2536688 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1364 +chrX 2536689 . T C, 261.04 . AS_QUALapprox=|271|0;AS_VarDP=19|31|0;BaseQRankSum=-3.225;DP=52;MQRankSum=0.000;QUALapprox=271;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;ReadPosRankSum=-0.360;VarDP=50 GT:AD:DP:GQ:PL:SB 1:19,31,0:50:99:271,0,932:7,12,13,18 +chrX 2536690 . G . . END=2536829 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1474 +chrX 2536830 . T C, 1985.04 . AS_QUALapprox=|1995|0;AS_VarDP=0|61|0;DP=62;QUALapprox=1995;RAW_GT_COUNT=0,0,1;RAW_MQandDP=222001,62;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,61,0:61:99:1995,0,1995:0,0,32,29 +chrX 2536831 . G . . END=2537353 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1737 +chrX 2537354 . TAA T,TA, 854.01 . AS_QUALapprox=|864|759|0;AS_VarDP=0|27|22|0;DP=68;QUALapprox=864;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;VarDP=49 GT:AD:DP:GQ:PL:SB 1:0,27,22,0:49:99:864,0,105,763:0,0,22,27 +chrX 2537357 . A . . END=2537777 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1594 +chrX 2537778 . C T, 0.89 . AS_QUALapprox=|10|0;AS_VarDP=25|26|0;BaseQRankSum=-0.439;DP=56;MQRankSum=0.000;QUALapprox=10;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;ReadPosRankSum=-0.858;VarDP=51 GT:AD:DP:GQ:PL:SB 1:25,26,0:51:10:10,0,859:12,13,13,13 +chrX 2537779 . A . . END=2538193 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1518 +chrX 2538194 . T TTGTTTTGCACAAGG, 123.01 . AS_QUALapprox=|133|0;AS_VarDP=33|36|0;BaseQRankSum=1.324;DP=73;MQRankSum=0.000;QUALapprox=133;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;ReadPosRankSum=-0.619;VarDP=69 GT:AD:DP:GQ:PL:SB 1:33,36,0:69:99:133,0,1620:11,22,20,16 +chrX 2538195 . T . . END=2538407 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1800 +chrX 2538408 . C T, 2015.04 . AS_QUALapprox=|2025|0;AS_VarDP=0|62|0;DP=65;QUALapprox=2025;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:2025,0,2025:0,0,38,24 +chrX 2538409 . A . . END=2539311 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1676 +chrX 2539312 . G C, 119.04 . AS_QUALapprox=|129|0;AS_VarDP=26|31|0;BaseQRankSum=-0.713;DP=61;MQRankSum=0.000;QUALapprox=129;RAW_GT_COUNT=0,0,1;RAW_MQandDP=218304,61;ReadPosRankSum=0.144;VarDP=57 GT:AD:DP:GQ:PL:SB 1:26,31,0:57:99:129,0,992:12,14,16,15 +chrX 2539313 . G . . END=2539333 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1800 +chrX 2539334 . C G, 2011.04 . AS_QUALapprox=|2021|0;AS_VarDP=0|61|0;DP=66;QUALapprox=2021;RAW_GT_COUNT=0,0,1;RAW_MQandDP=235154,66;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,61,0:61:99:2021,0,2021:0,0,27,34 +chrX 2539335 . C . . END=2540465 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1394 +chrX 2540466 . A AT,ATT, 876.01 . AS_QUALapprox=|886|827|0;AS_VarDP=0|22|23|0;DP=65;QUALapprox=886;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=45 GT:AD:DP:GQ:PL:SB 1:0,22,23,0:45:59:886,0,59,719:0,0,23,22 +chrX 2540467 . T . . END=2540748 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1459 +chrX 2540749 . C T, 15.04 . AS_QUALapprox=|25|0;AS_VarDP=36|37|0;BaseQRankSum=-0.168;DP=75;MQRankSum=0.039;QUALapprox=25;RAW_GT_COUNT=0,0,1;RAW_MQandDP=264152,75;ReadPosRankSum=-1.578;VarDP=73 GT:AD:DP:GQ:PL:SB 1:36,37,0:73:25:25,0,1161:18,18,16,21 +chrX 2540750 . C . . END=2540850 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1633 +chrX 2540851 . CTTTTTTTT C,CTTTTTTT, 599.01 . AS_QUALapprox=|609|249|0;AS_VarDP=0|26|11|0;DP=55;QUALapprox=609;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=37 GT:AD:DP:GQ:PL:SB 1:0,26,11,0:37:99:609,0,360,875:0,0,17,20 +chrX 2540860 . T . . END=2541581 GT:DP:GQ:MIN_DP:PL 0:49:60:47:0,60 +chrX 2541582 . A T, 80.04 . AS_QUALapprox=|90|0;AS_VarDP=14|16|0;BaseQRankSum=1.587;DP=30;MQRankSum=0.000;QUALapprox=90;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;ReadPosRankSum=-0.770;VarDP=30 GT:AD:DP:GQ:PL:SB 1:14,16,0:30:90:90,0,556:10,4,10,6 +chrX 2541583 . T . . END=2541593 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,810 +chrX 2541594 . GAA G,GAAAA, 307.01 . AS_QUALapprox=|0|317|0;AS_VarDP=0|3|15|0;DP=46;QUALapprox=317;RAW_GT_COUNT=0,0,1;RAW_MQandDP=153600,46;VarDP=18 GT:AD:DP:GQ:PL:SB 2:0,3,15,0:18:99:317,690,0,553:0,0,9,9 +chrX 2541597 . A . . END=2541820 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1070 +chrX 2541821 . A G, 201.04 . AS_QUALapprox=|211|0;AS_VarDP=23|28|0;BaseQRankSum=0.789;DP=55;MQRankSum=0.000;QUALapprox=211;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;ReadPosRankSum=1.184;VarDP=51 GT:AD:DP:GQ:PL:SB 1:23,28,0:51:99:211,0,949:11,12,14,14 +chrX 2541822 . G . . END=2542547 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,307 +chrX 2542548 . A G, 1543.04 . AS_QUALapprox=|1553|0;AS_VarDP=0|49|0;DP=52;QUALapprox=1553;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180932,52;VarDP=49 GT:AD:DP:GQ:PL:SB 1:0,49,0:49:99:1553,0,1553:0,0,30,19 +chrX 2542549 . T . . END=2543001 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1493 +chrX 2543002 . AAAATAAAT A, 168.01 . AS_QUALapprox=|178|0;AS_VarDP=15|20|0;BaseQRankSum=-1.721;DP=51;MQRankSum=1.212;QUALapprox=178;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183025,51;ReadPosRankSum=-0.088;VarDP=35 GT:AD:DP:GQ:PL:SB 1:15,20,0:35:99:178,0,853:6,9,3,17 +chrX 2543011 . A . . END=2544094 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,842 +chrX 2544095 . T A, 27.04 . AS_QUALapprox=|37|0;AS_VarDP=29|29|0;BaseQRankSum=0.708;DP=59;MQRankSum=0.000;QUALapprox=37;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;ReadPosRankSum=-0.288;VarDP=58 GT:AD:DP:GQ:PL:SB 1:29,29,0:58:37:37,0,958:16,13,14,15 +chrX 2544096 . G . . END=2545327 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1552 +chrX 2545328 . G A, 2318.04 . AS_QUALapprox=|2328|0;AS_VarDP=0|70|0;DP=75;QUALapprox=2328;RAW_GT_COUNT=0,0,1;RAW_MQandDP=270000,75;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,70,0:70:99:2328,0,2328:0,0,30,40 +chrX 2545329 . T . . END=2546744 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1072 +chrX 2546745 . T C, 1666.04 . AS_QUALapprox=|1676|0;AS_VarDP=1|53|0;BaseQRankSum=-0.520;DP=55;MQRankSum=0.000;QUALapprox=1676;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;ReadPosRankSum=-1.605;VarDP=54 GT:AD:DP:GQ:PL:SB 1:1,53,0:54:99:1676,0,1710:0,1,24,29 +chrX 2546746 . G . . END=2547394 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1533 +chrX 2547395 . T C, 2266.04 . AS_QUALapprox=|2276|0;AS_VarDP=0|73|0;DP=76;QUALapprox=2276;RAW_GT_COUNT=0,0,1;RAW_MQandDP=273600,76;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,73,0:73:99:2276,0,2276:0,0,36,37 +chrX 2547396 . G . . END=2547687 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1533 +chrX 2547688 . G A, 121.04 . AS_QUALapprox=|131|0;AS_VarDP=20|21|0;BaseQRankSum=2.432;DP=44;MQRankSum=0.000;QUALapprox=131;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158400,44;ReadPosRankSum=0.926;VarDP=41 GT:AD:DP:GQ:PL:SB 1:20,21,0:41:99:131,0,730:9,11,11,10 +chrX 2547689 . C . . END=2547731 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,998 +chrX 2547732 . TTGTATGTG T, 925.01 . AS_QUALapprox=|935|0;AS_VarDP=0|21|0;DP=33;QUALapprox=935;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:935,0,935:0,0,18,3 +chrX 2547741 . T . . END=2548348 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,123 +chrX 2548349 . C A, 0.04 . AS_QUALapprox=|5|0;AS_VarDP=29|30|0;BaseQRankSum=-1.713;DP=60;MQRankSum=1.051;QUALapprox=5;RAW_GT_COUNT=0,0,1;RAW_MQandDP=215425,60;ReadPosRankSum=0.432;VarDP=59 GT:AD:DP:GQ:PL:SB 1:29,30,0:59:5:5,0,1013:16,13,14,16 +chrX 2548350 . T . . END=2549532 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1672 +chrX 2549533 . C G, 50.04 . AS_QUALapprox=|60|0;AS_VarDP=35|35|0;BaseQRankSum=1.576;DP=74;MQRankSum=0.000;QUALapprox=60;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;ReadPosRankSum=-0.899;VarDP=70 GT:AD:DP:GQ:PL:SB 1:35,35,0:70:60:60,0,1141:17,18,18,17 +chrX 2549534 . T . . END=2549906 GT:DP:GQ:MIN_DP:PL 0:68:80:68:0,80 +chrX 2549907 . C CAG, 53.01 . AS_QUALapprox=|63|0;AS_VarDP=22|24|0;BaseQRankSum=-0.433;DP=61;MQRankSum=0.000;QUALapprox=63;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;ReadPosRankSum=1.518;VarDP=46 GT:AD:DP:GQ:PL:SB 1:22,24,0:46:63:63,0,842:9,13,12,12 +chrX 2549908 . A . . END=2550032 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1682 +chrX 2550033 . C T, 89.04 . AS_QUALapprox=|99|0;AS_VarDP=23|26|0;BaseQRankSum=0.528;DP=52;MQRankSum=0.000;QUALapprox=99;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;ReadPosRankSum=0.982;VarDP=49 GT:AD:DP:GQ:PL:SB 1:23,26,0:49:99:99,0,858:15,8,14,12 +chrX 2550034 . G . . END=2550390 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1509 +chrX 2550391 . C T, 11.04 . AS_QUALapprox=|21|0;AS_VarDP=35|35|0;BaseQRankSum=0.810;DP=71;MQRankSum=-5.527;QUALapprox=21;RAW_GT_COUNT=0,0,1;RAW_MQandDP=213273,71;ReadPosRankSum=0.144;VarDP=70 GT:AD:DP:GQ:PL:SB 1:35,35,0:70:21:21,0,1553:15,20,12,23 +chrX 2550392 . C G, 11.04 . AS_QUALapprox=|21|0;AS_VarDP=35|35|0;BaseQRankSum=0.308;DP=72;MQRankSum=-5.527;QUALapprox=21;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216873,72;ReadPosRankSum=0.156;VarDP=70 GT:AD:DP:GQ:PL:SB 1:35,35,0:70:21:21,0,1553:15,20,12,23 +chrX 2550393 . A . . END=2550498 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1800 +chrX 2550499 . T C, 1863.04 . AS_QUALapprox=|1873|0;AS_VarDP=0|63|0;DP=64;QUALapprox=1873;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212281,64;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,63,0:63:99:1873,0,1873:0,0,35,28 +chrX 2550500 . G . . END=2551305 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1369 +chrX 2551306 . ATT A, 44.01 . AS_QUALapprox=|54|0;AS_VarDP=13|14|0;BaseQRankSum=1.506;DP=43;MQRankSum=1.112;QUALapprox=54;RAW_GT_COUNT=0,0,1;RAW_MQandDP=152800,43;ReadPosRankSum=0.583;VarDP=27 GT:AD:DP:GQ:PL:SB 1:13,14,0:27:54:54,0,443:9,4,7,7 +chrX 2551309 . T . . END=2551342 GT:DP:GQ:MIN_DP:PL 0:38:99:38:0,952 +chrX 2551343 . G T, 1319.04 . AS_QUALapprox=|1329|0;AS_VarDP=0|43|0;DP=45;QUALapprox=1329;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158000,45;VarDP=43 GT:AD:DP:GQ:PL:SB 1:0,43,0:43:99:1329,0,1329:0,0,21,22 +chrX 2551344 . T . . END=2551599 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1483 +chrX 2551600 . C T, 160.04 . AS_QUALapprox=|170|0;AS_VarDP=37|37|0;BaseQRankSum=3.579;DP=75;MQRankSum=-0.973;QUALapprox=170;RAW_GT_COUNT=0,0,1;RAW_MQandDP=269425,75;ReadPosRankSum=0.633;VarDP=74 GT:AD:DP:GQ:PL:SB 1:37,37,0:74:99:170,0,1245:18,19,17,20 +chrX 2551601 . G . . END=2552212 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1800 +chrX 2552213 . T C, 267.04 . AS_QUALapprox=|277|0;AS_VarDP=27|38|0;BaseQRankSum=-1.762;DP=75;MQRankSum=0.000;QUALapprox=277;RAW_GT_COUNT=0,0,1;RAW_MQandDP=269425,75;ReadPosRankSum=-0.113;VarDP=65 GT:AD:DP:GQ:PL:SB 1:27,38,0:65:99:277,0,1175:15,12,18,20 +chrX 2552214 . G . . END=2552351 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1800 +chrX 2552352 . T G, 25.04 . AS_QUALapprox=|35|0;AS_VarDP=29|30|0;BaseQRankSum=0.076;DP=62;MQRankSum=0.000;QUALapprox=35;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;ReadPosRankSum=0.653;VarDP=59 GT:AD:DP:GQ:PL:SB 1:29,30,0:59:35:35,0,982:14,15,15,15 +chrX 2552353 . C . . END=2552810 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,293 +chrX 2552811 . A G, 2268.04 . AS_QUALapprox=|2278|0;AS_VarDP=0|70|0;DP=71;QUALapprox=2278;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,70,0:70:99:2278,0,2278:0,0,36,34 +chrX 2552812 . A . . END=2553050 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1800 +chrX 2553051 . T G, 226.04 . AS_QUALapprox=|236|0;AS_VarDP=26|36|0;BaseQRankSum=-1.984;DP=64;MQRankSum=0.000;QUALapprox=236;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;ReadPosRankSum=-1.484;VarDP=62 GT:AD:DP:GQ:PL:SB 1:26,36,0:62:99:236,0,1120:13,13,20,16 +chrX 2553052 . T . . END=2553079 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1800 +chrX 2553080 . G A, 233.04 . AS_QUALapprox=|243|0;AS_VarDP=29|37|0;BaseQRankSum=-1.119;DP=66;MQRankSum=0.000;QUALapprox=243;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;ReadPosRankSum=-0.343;VarDP=66 GT:AD:DP:GQ:PL:SB 1:29,37,0:66:99:243,0,1206:17,12,21,16 +chrX 2553081 . T . . END=2553272 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1775 +chrX 2553273 . A . . END=2553273 GT:DP:GQ:MIN_DP:PL 0:56:11:56:0,11 +chrX 2553274 . T . . END=2553492 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,329 +chrX 2553493 . G A, 0.50 . AS_QUALapprox=|9|0;AS_VarDP=36|37|0;BaseQRankSum=-0.917;DP=74;MQRankSum=0.000;QUALapprox=9;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;ReadPosRankSum=0.408;VarDP=73 GT:AD:DP:GQ:PL:SB 1:36,37,0:73:9:9,0,1216:15,21,20,17 +chrX 2553494 . G . . END=2553681 GT:DP:GQ:MIN_DP:PL 0:77:99:77:0,135 +chrX 2553682 . G T, 169.04 . AS_QUALapprox=|179|0;AS_VarDP=32|36|0;BaseQRankSum=1.498;DP=76;MQRankSum=1.090;QUALapprox=179;RAW_GT_COUNT=0,0,1;RAW_MQandDP=273025,76;ReadPosRankSum=-0.246;VarDP=68 GT:AD:DP:GQ:PL:SB 1:32,36,0:68:99:179,0,1211:16,16,16,20 +chrX 2553683 . A . . END=2553874 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1800 +chrX 2553875 . G C, 2276.04 . AS_QUALapprox=|2286|0;AS_VarDP=0|71|0;DP=71;QUALapprox=2286;RAW_GT_COUNT=0,0,1;RAW_MQandDP=254125,71;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,71,0:71:99:2286,0,2286:0,0,39,32 +chrX 2553876 . C . . END=2553909 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1800 +chrX 2553910 . T C, 74.04 . AS_QUALapprox=|84|0;AS_VarDP=38|41|0;BaseQRankSum=-0.298;DP=81;MQRankSum=0.090;QUALapprox=84;RAW_GT_COUNT=0,0,1;RAW_MQandDP=290125,81;ReadPosRankSum=-1.026;VarDP=79 GT:AD:DP:GQ:PL:SB 1:38,41,0:79:84:84,0,1285:21,17,26,15 +chrX 2553911 . G . . END=2554385 GT:DP:GQ:MIN_DP:PL 0:76:47:61:0,47 +chrX 2554386 . G A, 2045.04 . AS_QUALapprox=|2055|0;AS_VarDP=0|61|0;DP=63;QUALapprox=2055;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,61,0:61:99:2055,0,2055:0,0,31,30 +chrX 2554387 . T . . END=2554836 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1673 +chrX 2554837 . C T, 1772.04 . AS_QUALapprox=|1782|0;AS_VarDP=1|53|0;BaseQRankSum=3.179;DP=57;MQRankSum=0.000;QUALapprox=1782;RAW_GT_COUNT=0,0,1;RAW_MQandDP=204625,57;ReadPosRankSum=-1.605;VarDP=54 GT:AD:DP:GQ:PL:SB 1:1,53,0:54:99:1782,0,1791:0,1,29,24 +chrX 2554838 . C . . END=2555864 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1404 +chrX 2555865 . T G, 1466.04 . AS_QUALapprox=|1476|0;AS_VarDP=0|45|0;DP=48;QUALapprox=1476;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=45 GT:AD:DP:GQ:PL:SB 1:0,45,0:45:99:1476,0,1476:0,0,22,23 +chrX 2555866 . G . . END=2555934 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,1385 +chrX 2555935 . C T, 1756.04 . AS_QUALapprox=|1766|0;AS_VarDP=1|55|0;BaseQRankSum=1.971;DP=59;MQRankSum=0.000;QUALapprox=1766;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;ReadPosRankSum=0.309;VarDP=56 GT:AD:DP:GQ:PL:SB 1:1,55,0:56:99:1766,0,1791:1,0,27,28 +chrX 2555936 . C . . END=2557032 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1707 +chrX 2557033 . A G, 69.04 . AS_QUALapprox=|79|0;AS_VarDP=32|36|0;BaseQRankSum=-1.337;DP=71;MQRankSum=0.000;QUALapprox=79;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;ReadPosRankSum=-1.131;VarDP=68 GT:AD:DP:GQ:PL:SB 1:32,36,0:68:79:79,0,1111:12,20,24,12 +chrX 2557034 . G . . END=2560697 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,363 +chrX 2560698 . C T, 1524.04 . AS_QUALapprox=|1534|0;AS_VarDP=0|45|0;DP=47;QUALapprox=1534;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;VarDP=45 GT:AD:DP:GQ:PL:SB 1:0,45,0:45:99:1534,0,1534:0,0,14,31 +chrX 2560699 . G . . END=2561192 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,1350 +chrX 2561193 . GTA G, 1496.01 . AS_QUALapprox=|1506|0;AS_VarDP=0|40|0;DP=50;QUALapprox=1506;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176800,50;VarDP=40 GT:AD:DP:GQ:PL:SB 1:0,40,0:40:99:1506,0,1506:0,0,19,21 +chrX 2561196 . T . . END=2562401 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,675 +chrX 2562402 . CTATATA C,CTA, 1680.01 . AS_QUALapprox=|182|1690|0;AS_VarDP=0|0|35|0;DP=49;QUALapprox=1690;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=35 GT:AD:DP:GQ:PL:SB 2:0,0,35,0:35:99:1690,1508,0,1599:0,0,21,14 +chrX 2562408 . A *,C, 1528.04 . AS_QUALapprox=|0|1690|0;AS_VarDP=0|0|35|0;DP=47;QUALapprox=1690;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;VarDP=35 GT:AD:DP:GQ:PL:SB 2:0,0,35,0:35:99:1690,1508,0,1599:0,0,21,14 +chrX 2562409 . T . . END=2562944 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1190 +chrX 2562945 . C A, 1768.04 . AS_QUALapprox=|1778|0;AS_VarDP=1|57|0;BaseQRankSum=-0.550;DP=61;MQRankSum=0.000;QUALapprox=1778;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;ReadPosRankSum=1.524;VarDP=58 GT:AD:DP:GQ:PL:SB 1:1,57,0:58:99:1778,0,1813:0,1,32,25 +chrX 2562946 . T . . END=2563543 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1800 +chrX 2563544 . T A, 30.04 . AS_QUALapprox=|40|0;AS_VarDP=35|39|0;BaseQRankSum=-2.426;DP=75;MQRankSum=0.000;QUALapprox=40;RAW_GT_COUNT=0,0,1;RAW_MQandDP=270000,75;ReadPosRankSum=-1.489;VarDP=74 GT:AD:DP:GQ:PL:SB 1:35,39,0:74:40:40,0,1215:12,23,18,21 +chrX 2563545 . G . . END=2564133 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1444 +chrX 2564134 . A AT, 763.01 . AS_QUALapprox=|773|0;AS_VarDP=0|36|0;DP=48;QUALapprox=773;RAW_GT_COUNT=0,0,1;RAW_MQandDP=168336,48;VarDP=36 GT:AD:DP:GQ:PL:SB 1:0,36,0:36:99:773,0,773:0,0,24,12 +chrX 2564135 . T . . END=2564787 GT:DP:GQ:MIN_DP:PL 0:63:94:63:0,94 +chrX 2564788 . C A, 1608.04 . AS_QUALapprox=|1618|0;AS_VarDP=0|48|0;DP=51;QUALapprox=1618;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=48 GT:AD:DP:GQ:PL:SB 1:0,48,0:48:99:1618,0,1618:0,0,31,17 +chrX 2564789 . G . . END=2564917 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1696 +chrX 2564918 . C . . END=2564918 GT:DP:GQ:MIN_DP:PL 0:52:0:52:0,0 +chrX 2564919 . G . . END=2565012 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,332 +chrX 2565013 . A G, 128.04 . AS_QUALapprox=|138|0;AS_VarDP=31|35|0;BaseQRankSum=0.217;DP=68;MQRankSum=1.887;QUALapprox=138;RAW_GT_COUNT=0,0,1;RAW_MQandDP=243075,68;ReadPosRankSum=-1.774;VarDP=66 GT:AD:DP:GQ:PL:SB 1:31,35,0:66:99:138,0,1166:13,18,11,24 +chrX 2565014 . C . . END=2565046 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1800 +chrX 2565047 . C A, 71.04 . AS_QUALapprox=|81|0;AS_VarDP=32|32|0;BaseQRankSum=1.511;DP=66;MQRankSum=1.448;QUALapprox=81;RAW_GT_COUNT=0,0,1;RAW_MQandDP=236450,66;ReadPosRankSum=1.088;VarDP=64 GT:AD:DP:GQ:PL:SB 1:32,32,0:64:81:81,0,1052:11,21,13,19 +chrX 2565048 . G . . END=2565097 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1633 +chrX 2565098 . CA C, 1061.01 . AS_QUALapprox=|1071|0;AS_VarDP=1|39|0;BaseQRankSum=-0.518;DP=61;MQRankSum=0.000;QUALapprox=1071;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;ReadPosRankSum=1.431;VarDP=40 GT:AD:DP:GQ:PL:SB 1:1,39,0:40:99:1071,0,1098:0,1,16,23 +chrX 2565100 . A . . END=2565247 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1800 +chrX 2565248 . T G, 2305.04 . AS_QUALapprox=|2315|0;AS_VarDP=0|72|0;DP=75;QUALapprox=2315;RAW_GT_COUNT=0,0,1;RAW_MQandDP=270000,75;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,72,0:72:99:2315,0,2315:0,0,47,25 +chrX 2565249 . T . . END=2565419 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,312 +chrX 2565420 . A G, 2598.04 . AS_QUALapprox=|2608|0;AS_VarDP=0|71|0;DP=71;QUALapprox=2608;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,71,0:71:99:2608,0,2608:0,0,33,38 +chrX 2565421 . A . . END=2565833 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1792 +chrX 2565834 . T C, 1842.04 . AS_QUALapprox=|1852|0;AS_VarDP=0|55|0;DP=60;QUALapprox=1852;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:1852,0,1852:0,0,26,29 +chrX 2565835 . A . . END=2565901 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1800 +chrX 2565902 . G A, 22.04 . AS_QUALapprox=|32|0;AS_VarDP=42|38|0;BaseQRankSum=3.512;DP=83;MQRankSum=0.000;QUALapprox=32;RAW_GT_COUNT=0,0,1;RAW_MQandDP=298800,83;ReadPosRankSum=-2.414;VarDP=80 GT:AD:DP:GQ:PL:SB 1:42,38,0:80:32:32,0,1301:25,17,20,18 +chrX 2565903 . T . . END=2567641 GT:DP:GQ:MIN_DP:PL 0:67:50:66:0,50 +chrX 2567642 . ATT A,AT, 1249.01 . AS_QUALapprox=|0|1259|0;AS_VarDP=0|3|48|0;DP=63;QUALapprox=1259;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=51 GT:AD:DP:GQ:PL:SB 2:0,3,48,0:51:99:1259,1270,0,1296:0,0,27,24 +chrX 2567645 . T . . END=2570080 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,379 +chrX 2570081 . T C, 2342.04 . AS_QUALapprox=|2352|0;AS_VarDP=0|72|0;DP=73;QUALapprox=2352;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,72,0:72:99:2352,0,2352:0,0,43,29 +chrX 2570082 . C . . END=2571822 GT:DP:GQ:MIN_DP:PL 0:73:99:73:0,913 +chrX 2571823 . A G, 49.04 . AS_QUALapprox=|59|0;AS_VarDP=21|24|0;BaseQRankSum=-1.049;DP=49;MQRankSum=0.000;QUALapprox=59;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;ReadPosRankSum=1.047;VarDP=45 GT:AD:DP:GQ:PL:SB 1:21,24,0:45:59:59,0,769:8,13,11,13 +chrX 2571824 . T . . END=2573054 GT:DP:GQ:MIN_DP:PL 0:63:84:63:0,84 +chrX 2573055 . C T, 0.02 . AS_QUALapprox=|4|0;AS_VarDP=28|29|0;BaseQRankSum=-1.221;DP=57;MQRankSum=0.000;QUALapprox=4;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;ReadPosRankSum=-1.350;VarDP=57 GT:AD:DP:GQ:PL:SB 1:28,29,0:57:4:4,0,1263:11,17,14,15 +chrX 2573056 . T . . END=2573292 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,134 +chrX 2573293 . A C, 1523.04 . AS_QUALapprox=|1533|0;AS_VarDP=0|48|0;DP=50;QUALapprox=1533;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=48 GT:AD:DP:GQ:PL:SB 1:0,48,0:48:99:1533,0,1533:0,0,24,24 +chrX 2573294 . T . . END=2573377 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1353 +chrX 2573378 . C G, 1975.04 . AS_QUALapprox=|1985|0;AS_VarDP=0|62|0;DP=62;QUALapprox=1985;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:1985,0,1985:0,0,35,27 +chrX 2573379 . T . . END=2573437 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1800 +chrX 2573438 . T C, 57.04 . AS_QUALapprox=|67|0;AS_VarDP=30|31|0;BaseQRankSum=1.514;DP=62;MQRankSum=0.000;QUALapprox=67;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;ReadPosRankSum=0.137;VarDP=61 GT:AD:DP:GQ:PL:SB 1:30,31,0:61:67:67,0,1394:15,15,19,12 +chrX 2573439 . A . . END=2573441 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1800 +chrX 2573442 . T C, 114.04 . AS_QUALapprox=|124|0;AS_VarDP=29|32|0;BaseQRankSum=0.126;DP=62;MQRankSum=0.000;QUALapprox=124;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;ReadPosRankSum=-0.118;VarDP=61 GT:AD:DP:GQ:PL:SB 1:29,32,0:61:99:124,0,1429:15,14,20,12 +chrX 2573443 . A . . END=2573678 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,278 +chrX 2573679 . C . . END=2573679 GT:DP:GQ:MIN_DP:PL 0:68:10:68:0,10 +chrX 2573680 . G . . END=2573853 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1377 +chrX 2573854 . T C, 1601.04 . AS_QUALapprox=|1611|0;AS_VarDP=0|43|0;DP=44;QUALapprox=1611;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158281,44;VarDP=43 GT:AD:DP:GQ:PL:SB 1:0,43,0:43:99:1611,0,1611:0,0,26,17 +chrX 2573855 . G . . END=2573859 GT:DP:GQ:MIN_DP:PL 0:38:99:38:0,1042 +chrX 2573860 . CA C, 1499.01 . AS_QUALapprox=|1509|0;AS_VarDP=3|44|0;BaseQRankSum=-0.989;DP=56;MQRankSum=-0.174;QUALapprox=1509;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201481,56;ReadPosRankSum=-0.115;VarDP=47 GT:AD:DP:GQ:PL:SB 1:3,44,0:47:99:1509,0,1559:0,3,27,17 +chrX 2573862 . A . . END=2573984 GT:DP:GQ:MIN_DP:PL 0:68:94:68:0,94 +chrX 2573985 . ATGTGTGTGTGTGTG A,ATG, 2101.01 . AS_QUALapprox=|1805|2111|0;AS_VarDP=0|32|37|0;DP=80;QUALapprox=2111;RAW_GT_COUNT=0,0,1;RAW_MQandDP=285264,80;VarDP=69 GT:AD:DP:GQ:PL:SB 2:0,32,37,0:69:99:2111,306,0,1704:0,0,41,28 +chrX 2574000 . T . . END=2574016 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1800 +chrX 2574017 . GCGCGCGCGCGCGCGCGCGCACGCA G, 305.01 . AS_QUALapprox=|315|0;AS_VarDP=33|38|0;BaseQRankSum=-0.823;DP=78;MQRankSum=0.000;QUALapprox=315;RAW_GT_COUNT=0,0,1;RAW_MQandDP=275305,78;ReadPosRankSum=0.294;VarDP=71 GT:AD:DP:GQ:PL:SB 1:33,38,0:71:99:315,0,1328:24,9,19,19 +chrX 2574042 . C . . END=2574260 GT:DP:GQ:MIN_DP:PL 0:77:99:77:0,1444 +chrX 2574261 . C T, 2481.04 . AS_QUALapprox=|2491|0;AS_VarDP=0|77|0;DP=80;QUALapprox=2491;RAW_GT_COUNT=0,0,1;RAW_MQandDP=288000,80;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,77,0:77:99:2491,0,2491:0,0,36,41 +chrX 2574262 . G . . END=2574850 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1448 +chrX 2574851 . A G, 2929.04 . AS_QUALapprox=|2939|0;AS_VarDP=0|68|0;DP=70;QUALapprox=2939;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,68,0:68:99:2939,0,2939:0,0,42,26 +chrX 2574852 . C . . END=2574861 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1800 +chrX 2574862 . T A, 2818.04 . AS_QUALapprox=|2828|0;AS_VarDP=0|65|0;DP=67;QUALapprox=2828;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,65,0:65:99:2828,0,2828:0,0,42,23 +chrX 2574863 . G . . END=2575183 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1756 +chrX 2575184 . C T, 178.04 . AS_QUALapprox=|188|0;AS_VarDP=33|39|0;BaseQRankSum=-0.172;DP=73;MQRankSum=0.000;QUALapprox=188;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;ReadPosRankSum=-1.051;VarDP=72 GT:AD:DP:GQ:PL:SB 1:33,39,0:72:99:188,0,1250:19,14,15,24 +chrX 2575185 . A . . END=2575262 GT:DP:GQ:MIN_DP:PL 0:66:45:62:0,45 +chrX 2575263 . C T, 24.04 . AS_QUALapprox=|34|0;AS_VarDP=31|33|0;BaseQRankSum=-0.482;DP=65;MQRankSum=0.000;QUALapprox=34;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;ReadPosRankSum=-0.040;VarDP=64 GT:AD:DP:GQ:PL:SB 1:31,33,0:64:34:34,0,1040:14,17,19,14 +chrX 2575264 . C . . END=2575490 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1800 +chrX 2575491 . T C, 2066.04 . AS_QUALapprox=|2076|0;AS_VarDP=0|67|0;DP=71;QUALapprox=2076;RAW_GT_COUNT=0,0,1;RAW_MQandDP=253444,71;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,67,0:67:99:2076,0,2076:0,0,34,33 +chrX 2575492 . G . . END=2575534 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1800 +chrX 2575535 . T C, 114.04 . AS_QUALapprox=|124|0;AS_VarDP=30|34|0;BaseQRankSum=0.259;DP=69;MQRankSum=0.000;QUALapprox=124;RAW_GT_COUNT=0,0,1;RAW_MQandDP=246244,69;ReadPosRankSum=-0.384;VarDP=64 GT:AD:DP:GQ:PL:SB 1:30,34,0:64:99:124,0,1041:15,15,18,16 +chrX 2575536 . G . . END=2576077 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,125 +chrX 2576078 . GTTTTTT G,GTT, 372.01 . AS_QUALapprox=|341|382|0;AS_VarDP=7|28|11|0;BaseQRankSum=2.182;DP=63;MQRankSum=-0.363;QUALapprox=382;RAW_GT_COUNT=0,0,1;RAW_MQandDP=224800,63;ReadPosRankSum=0.888;VarDP=46 GT:AD:DP:GQ:PL:SB 2:7,28,11,0:46:41:382,41,0,872:2,5,21,18 +chrX 2576085 . T . . END=2576411 GT:DP:GQ:MIN_DP:PL 0:64:41:57:0,41 +chrX 2576412 . T C, 74.04 . AS_QUALapprox=|84|0;AS_VarDP=38|42|0;BaseQRankSum=-0.842;DP=81;MQRankSum=0.000;QUALapprox=84;RAW_GT_COUNT=0,0,1;RAW_MQandDP=291600,81;ReadPosRankSum=-0.978;VarDP=80 GT:AD:DP:GQ:PL:SB 1:38,42,0:80:84:84,0,1319:15,23,25,17 +chrX 2576413 . T . . END=2576691 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1330 +chrX 2576692 . CAAAA C,CAAAAA, 278.01 . AS_QUALapprox=|288|263|0;AS_VarDP=1|19|14|0;BaseQRankSum=2.209;DP=62;MQRankSum=0.000;QUALapprox=288;RAW_GT_COUNT=0,0,1;RAW_MQandDP=222625,62;ReadPosRankSum=0.054;VarDP=34 GT:AD:DP:GQ:PL:SB 1:1,19,14,0:34:25:288,0,25,565:1,0,17,16 +chrX 2576697 . A . . END=2578617 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,313 +chrX 2578618 . G C, 1739.04 . AS_QUALapprox=|1749|0;AS_VarDP=0|53|0;DP=60;QUALapprox=1749;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=53 GT:AD:DP:GQ:PL:SB 1:0,53,0:53:99:1749,0,1749:0,0,22,31 +chrX 2578619 . G . . END=2578759 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,1260 +chrX 2578760 . G C, 1179.04 . AS_QUALapprox=|1189|0;AS_VarDP=0|41|0;DP=64;QUALapprox=1189;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=41 GT:AD:DP:GQ:PL:SB 1:0,41,0:41:99:1189,0,1189:0,0,12,29 +chrX 2578761 . T . . END=2578879 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,477 +chrX 2578880 . G T, 689.04 . AS_QUALapprox=|699|0;AS_VarDP=0|24|0;DP=65;QUALapprox=699;RAW_GT_COUNT=0,0,1;RAW_MQandDP=227304,65;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:699,0,699:0,0,10,14 +chrX 2578881 . A . . END=2578896 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,352 +chrX 2578897 . CT C, 415.01 . AS_QUALapprox=|425|0;AS_VarDP=0|15|0;DP=58;QUALapprox=425;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205304,58;VarDP=15 GT:AD:DP:GQ:PL:SB 1:0,15,0:15:99:425,0,425:0,0,7,8 +chrX 2578899 . T . . END=2578939 GT:DP:GQ:MIN_DP:PL 0:21:99:21:0,442 +chrX 2578940 . T C, 1070.04 . AS_QUALapprox=|1080|0;AS_VarDP=0|24|0;DP=40;QUALapprox=1080;RAW_GT_COUNT=0,0,1;RAW_MQandDP=144000,40;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:1080,0,1080:0,0,18,6 +chrX 2578941 . T . . END=2578953 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,774 +chrX 2578954 . G A, 1070.04 . AS_QUALapprox=|1080|0;AS_VarDP=0|24|0;DP=41;QUALapprox=1080;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147600,41;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:1080,0,1080:0,0,18,6 +chrX 2578955 . A . . END=2578967 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,784 +chrX 2578968 . G C, 1205.04 . AS_QUALapprox=|1215|0;AS_VarDP=0|27|0;DP=44;QUALapprox=1215;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158400,44;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:1215,0,1215:0,0,19,8 +chrX 2578969 . A . . END=2578974 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,878 +chrX 2578975 . T G, 1334.04 . AS_QUALapprox=|1344|0;AS_VarDP=0|31|0;DP=50;QUALapprox=1344;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1344,0,1344:0,0,21,10 +chrX 2578976 . T . . END=2579019 GT:DP:GQ:MIN_DP:PL 0:41:99:41:0,1062 +chrX 2579020 . A G, 1060.04 . AS_QUALapprox=|1070|0;AS_VarDP=0|35|0;DP=50;QUALapprox=1070;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,35,0:35:99:1070,0,1070:0,0,21,14 +chrX 2579021 . C . . END=2579376 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1186 +chrX 2579377 . C CT, 1316.01 . AS_QUALapprox=|1326|0;AS_VarDP=0|50|0;DP=57;QUALapprox=1326;RAW_GT_COUNT=0,0,1;RAW_MQandDP=200443,57;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,50,0:50:99:1326,0,1327:0,0,29,21 +chrX 2579378 . T . . END=2579498 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1402 +chrX 2579499 . T C, 2156.04 . AS_QUALapprox=|2166|0;AS_VarDP=0|49|0;DP=50;QUALapprox=2166;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=49 GT:AD:DP:GQ:PL:SB 1:0,49,0:49:99:2166,0,2166:0,0,25,24 +chrX 2579500 . C T, 2156.04 . AS_QUALapprox=|2166|0;AS_VarDP=0|49|0;DP=49;QUALapprox=2166;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=49 GT:AD:DP:GQ:PL:SB 1:0,49,0:49:99:2166,0,2166:0,0,25,24 +chrX 2579501 . A . . END=2580386 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1530 +chrX 2580387 . TAC T, 1828.01 . AS_QUALapprox=|1838|0;AS_VarDP=1|59|0;BaseQRankSum=2.107;DP=73;MQRankSum=0.000;QUALapprox=1838;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;ReadPosRankSum=0.520;VarDP=60 GT:AD:DP:GQ:PL:SB 1:1,59,0:60:99:1838,0,1867:1,0,29,30 +chrX 2580390 . A . . END=2588135 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1052 +chrX 2588136 . T C, 338.04 . AS_QUALapprox=|348|0;AS_VarDP=26|36|0;BaseQRankSum=0.432;DP=66;MQRankSum=0.000;QUALapprox=348;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;ReadPosRankSum=1.662;VarDP=62 GT:AD:DP:GQ:PL:SB 1:26,36,0:62:99:348,0,1221:11,15,16,20 +chrX 2588137 . A . . END=2591307 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1528 +chrX 2591308 . G GT, 1083.01 . AS_QUALapprox=|1093|0;AS_VarDP=0|45|0;DP=59;QUALapprox=1093;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=45 GT:AD:DP:GQ:PL:SB 1:0,45,0:45:99:1093,0,1093:0,0,29,16 +chrX 2591309 . T . . END=2593827 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1195 +chrX 2593828 . TAA T, 112.01 . AS_QUALapprox=|122|0;AS_VarDP=18|20|0;BaseQRankSum=1.652;DP=50;MQRankSum=1.107;QUALapprox=122;RAW_GT_COUNT=0,0,1;RAW_MQandDP=179425,50;ReadPosRankSum=1.174;VarDP=38 GT:AD:DP:GQ:PL:SB 1:18,20,0:38:99:122,0,684:6,12,13,7 +chrX 2593831 . A . . END=2594675 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,254 +chrX 2594676 . A G, 312.04 . AS_QUALapprox=|322|0;AS_VarDP=30|42|0;BaseQRankSum=-1.506;DP=77;MQRankSum=0.000;QUALapprox=322;RAW_GT_COUNT=0,0,1;RAW_MQandDP=277200,77;ReadPosRankSum=0.943;VarDP=72 GT:AD:DP:GQ:PL:SB 1:30,42,0:72:99:322,0,1344:17,13,25,17 +chrX 2594677 . A . . END=2597421 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,204 +chrX 2597422 . G A, 99.04 . AS_QUALapprox=|109|0;AS_VarDP=21|25|0;BaseQRankSum=-1.186;DP=50;MQRankSum=0.000;QUALapprox=109;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;ReadPosRankSum=0.496;VarDP=46 GT:AD:DP:GQ:PL:SB 1:21,25,0:46:99:109,0,829:13,8,12,13 +chrX 2597423 . G . . END=2599083 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1366 +chrX 2599084 . T G, 148.04 . AS_QUALapprox=|158|0;AS_VarDP=23|29|0;BaseQRankSum=-1.683;DP=55;MQRankSum=0.000;QUALapprox=158;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;ReadPosRankSum=-1.079;VarDP=52 GT:AD:DP:GQ:PL:SB 1:23,29,0:52:99:158,0,948:9,14,18,11 +chrX 2599085 . G . . END=2599209 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,1479 +chrX 2599210 . G A, 125.04 . AS_QUALapprox=|135|0;AS_VarDP=24|29|0;BaseQRankSum=-0.680;DP=58;MQRankSum=0.000;QUALapprox=135;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;ReadPosRankSum=-0.554;VarDP=53 GT:AD:DP:GQ:PL:SB 1:24,29,0:53:99:135,0,893:7,17,15,14 +chrX 2599211 . G . . END=2599504 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1386 +chrX 2599505 . A AGAG,AG,AAGAG, 1776.01 . AS_QUALapprox=|1786|70|1574|0;AS_VarDP=0|24|1|19|0;DP=66;QUALapprox=1786;RAW_GT_COUNT=0,0,1;RAW_MQandDP=235025,66;VarDP=44 GT:AD:DP:GQ:PL:SB 1:0,24,1,19,0:44:99:1786,0,1716,212,1543:0,0,28,16 +chrX 2599506 . A . . END=2600036 GT:DP:GQ:MIN_DP:PL 0:70:50:59:0,50 +chrX 2600037 . C T, 1876.04 . AS_QUALapprox=|1886|0;AS_VarDP=0|57|0;DP=59;QUALapprox=1886;RAW_GT_COUNT=0,0,1;RAW_MQandDP=211825,59;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:1886,0,1886:0,0,30,27 +chrX 2600038 . T . . END=2600367 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1533 +chrX 2600368 . T TA, 257.01 . AS_QUALapprox=|267|0;AS_VarDP=23|33|0;BaseQRankSum=1.062;DP=69;MQRankSum=0.000;QUALapprox=267;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;ReadPosRankSum=-0.583;VarDP=56 GT:AD:DP:GQ:PL:SB 1:23,33,0:56:99:267,0,870:13,10,19,14 +chrX 2600369 . A . . END=2601932 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1572 +chrX 2601933 . G A, 328.04 . AS_QUALapprox=|338|0;AS_VarDP=30|39|0;BaseQRankSum=0.829;DP=72;MQRankSum=1.169;QUALapprox=338;RAW_GT_COUNT=0,0,1;RAW_MQandDP=258625,72;ReadPosRankSum=1.938;VarDP=69 GT:AD:DP:GQ:PL:SB 1:30,39,0:69:99:338,0,1316:10,20,7,32 +chrX 2601934 . G . . END=2603871 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,238 +chrX 2603872 . G T, 1623.04 . AS_QUALapprox=|1633|0;AS_VarDP=3|51|0;BaseQRankSum=4.032;DP=57;MQRankSum=-0.289;QUALapprox=1633;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201585,57;ReadPosRankSum=1.624;VarDP=54 GT:AD:DP:GQ:PL:SB 1:3,51,0:54:99:1633,0,1662:0,3,28,23 +chrX 2603873 . G . . END=2603976 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1283 +chrX 2603977 . G GA,GAA, 746.65 . AS_QUALapprox=|756|757|0;AS_VarDP=0|21|22|0;DP=53;QUALapprox=757;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=43 GT:AD:DP:GQ:PL:SB 2:0,21,22,0:43:1:757,1,0,632:0,0,21,22 +chrX 2603978 . A . . END=2604097 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1592 +chrX 2604098 . G T, 153.04 . AS_QUALapprox=|163|0;AS_VarDP=24|29|0;BaseQRankSum=0.880;DP=54;MQRankSum=0.000;QUALapprox=163;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;ReadPosRankSum=0.304;VarDP=53 GT:AD:DP:GQ:PL:SB 1:24,29,0:53:99:163,0,938:12,12,13,16 +chrX 2604099 . A . . END=2604344 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1558 +chrX 2604345 . G C, 0.89 . AS_QUALapprox=|10|0;AS_VarDP=29|29|0;BaseQRankSum=0.300;DP=58;MQRankSum=0.000;QUALapprox=10;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;ReadPosRankSum=0.319;VarDP=58 GT:AD:DP:GQ:PL:SB 1:29,29,0:58:10:10,0,933:12,17,19,10 +chrX 2604346 . G . . END=2605071 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1509 +chrX 2605072 . T C, 2313.04 . AS_QUALapprox=|2323|0;AS_VarDP=0|71|0;DP=75;QUALapprox=2323;RAW_GT_COUNT=0,0,1;RAW_MQandDP=269425,75;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,71,0:71:99:2323,0,2323:0,0,33,38 +chrX 2605073 . T . . END=2605161 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,388 +chrX 2605162 . G A, 381.04 . AS_QUALapprox=|391|0;AS_VarDP=26|39|0;BaseQRankSum=-0.587;DP=71;MQRankSum=0.000;QUALapprox=391;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255025,71;ReadPosRankSum=-0.643;VarDP=65 GT:AD:DP:GQ:PL:SB 1:26,39,0:65:99:391,0,1254:13,13,20,19 +chrX 2605163 . A . . END=2605309 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1800 +chrX 2605310 . A AAAAC, 326.01 . AS_QUALapprox=|336|0;AS_VarDP=22|30|0;BaseQRankSum=-0.528;DP=71;MQRankSum=0.000;QUALapprox=336;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;ReadPosRankSum=0.139;VarDP=52 GT:AD:DP:GQ:PL:SB 1:22,30,0:52:99:336,0,1325:10,12,15,15 +chrX 2605311 . A . . END=2606065 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1488 +chrX 2606066 . T C, 306.04 . AS_QUALapprox=|316|0;AS_VarDP=18|27|0;BaseQRankSum=-0.494;DP=49;MQRankSum=0.000;QUALapprox=316;RAW_GT_COUNT=0,0,1;RAW_MQandDP=175825,49;ReadPosRankSum=0.087;VarDP=45 GT:AD:DP:GQ:PL:SB 1:18,27,0:45:99:316,0,1131:5,10,12,12 +chrX 2606067 . T . . END=2607047 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,412 +chrX 2607048 . T TCCAC, 599.01 . AS_QUALapprox=|609|0;AS_VarDP=0|14|0;DP=30;QUALapprox=609;RAW_GT_COUNT=0,0,1;RAW_MQandDP=105316,30;VarDP=14 GT:AD:DP:GQ:PL:SB 1:0,14,0:14:99:609,0,610:0,0,0,14 +chrX 2607049 . C . . END=2607826 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,485 +chrX 2607827 . T C, 1948.04 . AS_QUALapprox=|1958|0;AS_VarDP=0|65|0;DP=68;QUALapprox=1958;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244225,68;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,65,0:65:99:1958,0,1958:0,0,27,38 +chrX 2607828 . G . . END=2608772 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,361 +chrX 2608773 . A C, 273.04 . AS_QUALapprox=|283|0;AS_VarDP=25|34|0;BaseQRankSum=-0.310;DP=63;MQRankSum=0.000;QUALapprox=283;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;ReadPosRankSum=-0.691;VarDP=59 GT:AD:DP:GQ:PL:SB 1:25,34,0:59:99:283,0,1102:12,13,13,21 +chrX 2608774 . T . . END=2609047 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1509 +chrX 2609048 . T G, 1658.04 . AS_QUALapprox=|1668|0;AS_VarDP=0|50|0;DP=51;QUALapprox=1668;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,50,0:50:99:1668,0,1668:0,0,23,27 +chrX 2609049 . C . . END=2609407 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1505 +chrX 2609408 . GGCGCGCCGTGGC G, 3212.01 . AS_QUALapprox=|3222|0;AS_VarDP=0|72|0;DP=79;QUALapprox=3222;RAW_GT_COUNT=0,0,1;RAW_MQandDP=284400,79;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,72,0:72:99:3222,0,3222:0,0,42,30 +chrX 2609421 . G . . END=2610548 GT:DP:GQ:MIN_DP:PL 0:52:36:39:0,36 +chrX 2610549 . C CCT, 956.01 . AS_QUALapprox=|966|0;AS_VarDP=0|24|0;DP=26;QUALapprox=966;RAW_GT_COUNT=0,0,1;RAW_MQandDP=91600,26;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:966,0,966:0,0,9,15 +chrX 2610550 . C . . END=2611235 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,315 +chrX 2611236 . TG T,TGG, 287.01 . AS_QUALapprox=|297|0|0;AS_VarDP=8|23|0|0;BaseQRankSum=0.909;DP=35;MQRankSum=1.769;QUALapprox=297;RAW_GT_COUNT=0,0,1;RAW_MQandDP=124000,35;ReadPosRankSum=0.813;VarDP=31 GT:AD:DP:GQ:PL:SB 1:8,23,0,0:31:99:297,0,871,764:5,3,17,6 +chrX 2611238 . T . . END=2611238 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,855 +chrX 2611239 . TTTTTTTG T, 268.01 . AS_QUALapprox=|278|0;AS_VarDP=8|23|0;BaseQRankSum=-1.013;DP=36;MQRankSum=1.769;QUALapprox=278;RAW_GT_COUNT=0,0,1;RAW_MQandDP=127600,36;ReadPosRankSum=0.406;VarDP=31 GT:AD:DP:GQ:PL:SB 1:8,23,0:31:99:278,0,638:5,3,17,6 +chrX 2611247 . T . . END=2611360 GT:DP:GQ:MIN_DP:PL 0:44:99:44:0,630 +chrX 2611361 . T C, 1716.04 . AS_QUALapprox=|1726|0;AS_VarDP=0|55|0;DP=55;QUALapprox=1726;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:1726,0,1726:0,0,28,27 +chrX 2611362 . G . . END=2612326 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,207 +chrX 2612327 . A G, 143.04 . AS_QUALapprox=|153|0;AS_VarDP=35|43|0;BaseQRankSum=-3.196;DP=79;MQRankSum=0.000;QUALapprox=153;RAW_GT_COUNT=0,0,1;RAW_MQandDP=284400,79;ReadPosRankSum=0.739;VarDP=78 GT:AD:DP:GQ:PL:SB 1:35,43,0:78:99:153,0,1369:18,17,28,15 +chrX 2612328 . T . . END=2612887 GT:DP:GQ:MIN_DP:PL 0:75:99:75:0,1800 +chrX 2612888 . G C, 1890.04 . AS_QUALapprox=|1900|0;AS_VarDP=0|60|0;DP=62;QUALapprox=1900;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:1900,0,1900:0,0,22,38 +chrX 2612889 . G . . END=2614729 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,684 +chrX 2614730 . C T, 274.04 . AS_QUALapprox=|284|0;AS_VarDP=27|33|0;BaseQRankSum=2.195;DP=62;MQRankSum=0.000;QUALapprox=284;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;ReadPosRankSum=-1.360;VarDP=60 GT:AD:DP:GQ:PL:SB 1:27,33,0:60:99:284,0,1082:12,15,18,15 +chrX 2614731 . C . . END=2615409 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1369 +chrX 2615410 . A C, 1524.04 . AS_QUALapprox=|1534|0;AS_VarDP=0|47|0;DP=48;QUALapprox=1534;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=47 GT:AD:DP:GQ:PL:SB 1:0,47,0:47:99:1534,0,1534:0,0,24,23 +chrX 2615411 . T . . END=2615662 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,1351 +chrX 2615663 . C T, 1945.04 . AS_QUALapprox=|1955|0;AS_VarDP=0|61|0;DP=61;QUALapprox=1955;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,61,0:61:99:1955,0,1955:0,0,27,34 +chrX 2615664 . G . . END=2616360 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1396 +chrX 2616361 . G A, 2451.04 . AS_QUALapprox=|2461|0;AS_VarDP=0|75|0;DP=78;QUALapprox=2461;RAW_GT_COUNT=0,0,1;RAW_MQandDP=280800,78;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,75,0:75:99:2461,0,2461:0,0,31,44 +chrX 2616362 . T . . END=2616798 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,296 +chrX 2616799 . T A, 124.04 . AS_QUALapprox=|134|0;AS_VarDP=21|25|0;BaseQRankSum=0.601;DP=50;MQRankSum=0.000;QUALapprox=134;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;ReadPosRankSum=0.585;VarDP=46 GT:AD:DP:GQ:PL:SB 1:21,25,0:46:99:134,0,824:13,8,11,14 +chrX 2616800 . C . . END=2617403 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1594 +chrX 2617404 . G A, 1974.04 . AS_QUALapprox=|1984|0;AS_VarDP=0|59|0;DP=60;QUALapprox=1984;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:1984,0,1984:0,0,26,33 +chrX 2617405 . A . . END=2617562 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,278 +chrX 2617563 . A G, 322.04 . AS_QUALapprox=|332|0;AS_VarDP=31|40|0;BaseQRankSum=1.125;DP=74;MQRankSum=0.000;QUALapprox=332;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;ReadPosRankSum=0.406;VarDP=71 GT:AD:DP:GQ:PL:SB 1:31,40,0:71:99:332,0,1304:17,14,23,17 +chrX 2617564 . C . . END=2617678 GT:DP:GQ:MIN_DP:PL 0:74:99:74:0,1800 +chrX 2617679 . CT C, 89.01 . AS_QUALapprox=|99|0;AS_VarDP=32|35|0;BaseQRankSum=0.355;DP=70;MQRankSum=0.000;QUALapprox=99;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;ReadPosRankSum=0.784;VarDP=67 GT:AD:DP:GQ:PL:SB 1:32,35,0:67:99:99,0,1070:11,21,18,17 +chrX 2617681 . T . . END=2617938 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1800 +chrX 2617939 . C . . END=2617939 GT:DP:GQ:MIN_DP:PL 0:71:0:71:0,0 +chrX 2617940 . T . . END=2618135 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1800 +chrX 2618136 . C G, 2570.04 . AS_QUALapprox=|2580|0;AS_VarDP=0|80|0;DP=83;QUALapprox=2580;RAW_GT_COUNT=0,0,1;RAW_MQandDP=298800,83;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,80,0:80:99:2580,0,2580:0,0,37,43 +chrX 2618137 . G . . END=2618571 GT:DP:GQ:MIN_DP:PL 0:78:99:78:0,1800 +chrX 2618572 . C T, 2077.04 . AS_QUALapprox=|2087|0;AS_VarDP=2|70|0;BaseQRankSum=0.962;DP=74;MQRankSum=0.000;QUALapprox=2087;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;ReadPosRankSum=0.017;VarDP=72 GT:AD:DP:GQ:PL:SB 1:2,70,0:72:99:2087,0,2131:1,1,30,40 +chrX 2618573 . G . . END=2619606 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1683 +chrX 2619607 . T C, 198.04 . AS_QUALapprox=|208|0;AS_VarDP=28|35|0;BaseQRankSum=-0.584;DP=63;MQRankSum=0.000;QUALapprox=208;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;ReadPosRankSum=-0.761;VarDP=63 GT:AD:DP:GQ:PL:SB 1:28,35,0:63:99:208,0,1161:13,15,14,21 +chrX 2619608 . T . . END=2620093 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1762 +chrX 2620094 . TTTA T, 2112.01 . AS_QUALapprox=|2122|0;AS_VarDP=1|49|0;BaseQRankSum=-0.381;DP=59;MQRankSum=0.000;QUALapprox=2122;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;ReadPosRankSum=1.005;VarDP=50 GT:AD:DP:GQ:PL:SB 1:1,49,0:50:99:2122,0,2167:0,1,28,21 +chrX 2620098 . T . . END=2621387 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1419 +chrX 2621388 . T TTATCTC, 2956.01 . AS_QUALapprox=|2966|0;AS_VarDP=0|67|0;DP=74;QUALapprox=2966;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,67,0:67:99:2966,0,2968:0,0,38,29 +chrX 2621389 . T . . END=2621842 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1568 +chrX 2621843 . T G, 224.04 . AS_QUALapprox=|234|0;AS_VarDP=24|31|0;BaseQRankSum=0.510;DP=58;MQRankSum=0.000;QUALapprox=234;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;ReadPosRankSum=-0.671;VarDP=55 GT:AD:DP:GQ:PL:SB 1:24,31,0:55:99:234,0,1015:11,13,20,11 +chrX 2621844 . A . . END=2622170 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1251 +chrX 2622171 . CA C,CAA, 220.01 . AS_QUALapprox=|204|230|0;AS_VarDP=1|17|18|0;BaseQRankSum=-0.634;DP=50;MQRankSum=0.000;QUALapprox=230;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;ReadPosRankSum=0.674;VarDP=36 GT:AD:DP:GQ:PL:SB 2:1,17,18,0:36:26:230,26,0,442:0,1,18,17 +chrX 2622173 . A . . END=2622630 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,333 +chrX 2622631 . C T, 2192.04 . AS_QUALapprox=|2202|0;AS_VarDP=0|66|0;DP=66;QUALapprox=2202;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=66 GT:AD:DP:GQ:PL:SB 1:0,66,0:66:99:2202,0,2202:0,0,39,27 +chrX 2622632 . C . . END=2622826 GT:DP:GQ:MIN_DP:PL 0:77:99:77:0,1800 +chrX 2622827 . A C, 2406.04 . AS_QUALapprox=|2416|0;AS_VarDP=0|74|0;DP=75;QUALapprox=2416;RAW_GT_COUNT=0,0,1;RAW_MQandDP=270000,75;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,74,0:74:99:2416,0,2416:0,0,32,42 +chrX 2622828 . A . . END=2622961 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1543 +chrX 2622962 . T C, 1622.04 . AS_QUALapprox=|1632|0;AS_VarDP=0|51|0;DP=52;QUALapprox=1632;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=51 GT:AD:DP:GQ:PL:SB 1:0,51,0:51:99:1632,0,1632:0,0,28,23 +chrX 2622963 . G . . END=2623691 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1562 +chrX 2623692 . GA G, 2694.01 . AS_QUALapprox=|2704|0;AS_VarDP=0|62|0;DP=64;QUALapprox=2704;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:2704,0,2704:0,0,37,25 +chrX 2623694 . T C, 2694.04 . AS_QUALapprox=|2704|0;AS_VarDP=0|62|0;DP=64;QUALapprox=2704;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:2704,0,2704:0,0,37,25 +chrX 2623695 . T . . END=2624424 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,406 +chrX 2624425 . CT C, 836.01 . AS_QUALapprox=|846|0;AS_VarDP=4|37|0;BaseQRankSum=0.117;DP=59;MQRankSum=-0.247;QUALapprox=846;RAW_GT_COUNT=0,0,1;RAW_MQandDP=211825,59;ReadPosRankSum=-1.780;VarDP=41 GT:AD:DP:GQ:PL:SB 1:4,37,0:41:99:846,0,928:2,2,18,19 +chrX 2624427 . T . . END=2625188 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1151 +chrX 2625189 . C T, 1956.04 . AS_QUALapprox=|1966|0;AS_VarDP=0|58|0;DP=61;QUALapprox=1966;RAW_GT_COUNT=0,0,1;RAW_MQandDP=217986,61;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,58,0:58:99:1966,0,1966:0,0,32,26 +chrX 2625190 . G . . END=2625369 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1453 +chrX 2625370 . T C, 87.04 . AS_QUALapprox=|97|0;AS_VarDP=26|30|0;BaseQRankSum=0.198;DP=60;MQRankSum=1.110;QUALapprox=97;RAW_GT_COUNT=0,0,1;RAW_MQandDP=215425,60;ReadPosRankSum=0.148;VarDP=56 GT:AD:DP:GQ:PL:SB 1:26,30,0:56:97:97,0,968:14,12,10,20 +chrX 2625371 . C . . END=2625506 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1722 +chrX 2625507 . A AT, 1748.01 . AS_QUALapprox=|1758|0;AS_VarDP=0|57|0;DP=63;QUALapprox=1758;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226449,63;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:1758,0,1758:0,0,38,19 +chrX 2625508 . T . . END=2625746 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1781 +chrX 2625747 . C T, 2021.04 . AS_QUALapprox=|2031|0;AS_VarDP=0|61|0;DP=64;QUALapprox=2031;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,61,0:61:99:2031,0,2031:0,0,31,30 +chrX 2625748 . T . . END=2625854 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1800 +chrX 2625855 . T TTATATA, 3110.01 . AS_QUALapprox=|3120|0;AS_VarDP=0|71|0;DP=80;QUALapprox=3120;RAW_GT_COUNT=0,0,1;RAW_MQandDP=288000,80;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,71,0:71:99:3120,0,3121:0,0,41,30 +chrX 2625856 . T . . END=2625910 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1800 +chrX 2625911 . C T, 2184.04 . AS_QUALapprox=|2194|0;AS_VarDP=1|66|0;BaseQRankSum=-0.227;DP=68;MQRankSum=0.000;QUALapprox=2194;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;ReadPosRankSum=0.828;VarDP=67 GT:AD:DP:GQ:PL:SB 1:1,66,0:67:99:2194,0,2229:1,0,34,32 +chrX 2625912 . G . . END=2626204 GT:DP:GQ:MIN_DP:PL 0:77:99:77:0,1800 +chrX 2626205 . C T, 99.04 . AS_QUALapprox=|109|0;AS_VarDP=31|34|0;BaseQRankSum=-0.091;DP=68;MQRankSum=0.000;QUALapprox=109;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;ReadPosRankSum=0.953;VarDP=65 GT:AD:DP:GQ:PL:SB 1:31,34,0:65:99:109,0,1121:14,17,16,18 +chrX 2626206 . T . . END=2626916 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1800 +chrX 2626917 . G A, 2502.04 . AS_QUALapprox=|2512|0;AS_VarDP=0|74|0;DP=76;QUALapprox=2512;RAW_GT_COUNT=0,0,1;RAW_MQandDP=273600,76;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,74,0:74:99:2512,0,2512:0,0,35,39 +chrX 2626918 . T . . END=2628279 GT:DP:GQ:MIN_DP:PL 0:57:64:57:0,64 +chrX 2628280 . A G, 2025.04 . AS_QUALapprox=|2035|0;AS_VarDP=0|57|0;DP=60;QUALapprox=2035;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:2035,0,2035:0,0,27,30 +chrX 2628281 . T . . END=2630041 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1427 +chrX 2630042 . A G, 2010.04 . AS_QUALapprox=|2020|0;AS_VarDP=0|70|0;DP=70;QUALapprox=2020;RAW_GT_COUNT=0,0,1;RAW_MQandDP=251104,70;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,70,0:70:99:2020,0,2020:0,0,44,26 +chrX 2630043 . T . . END=2631896 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,332 +chrX 2631897 . GCACTTCCTGGTTCATAGGGACATTGTAA G, 650.01 . AS_QUALapprox=|660|0;AS_VarDP=0|15|0;DP=28;QUALapprox=660;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93285,28;VarDP=15 GT:AD:DP:GQ:PL:SB 1:0,15,0:15:99:660,0,660:0,0,6,9 +chrX 2631926 . C . . END=2631927 GT:DP:GQ:MIN_DP:PL 0:19:99:19:0,536 +chrX 2631928 . C . . END=2631928 GT:DP:GQ:MIN_DP:PL 0:19:0:19:0,0 +chrX 2631929 . T . . END=2631932 GT:DP:GQ:MIN_DP:PL 0:18:90:18:0,90 +chrX 2631933 . T . . END=2631933 GT:DP:GQ:MIN_DP:PL 0:18:0:18:0,0 +chrX 2631934 . G . . END=2631941 GT:DP:GQ:MIN_DP:PL 0:17:90:17:0,90 +chrX 2631942 . G . . END=2631942 GT:DP:GQ:MIN_DP:PL 0:12:0:12:0,0 +chrX 2631943 . G . . END=2631945 GT:DP:GQ:MIN_DP:PL 0:12:90:12:0,90 +chrX 2631946 . C . . END=2631946 GT:DP:GQ:MIN_DP:PL 0:11:0:11:0,0 +chrX 2631947 . A . . END=2631947 GT:DP:GQ:MIN_DP:PL 0:10:90:10:0,90 +chrX 2631948 . T . . END=2631948 GT:DP:GQ:MIN_DP:PL 0:8:0:8:0,0 +chrX 2631949 . T . . END=2631949 GT:DP:GQ:MIN_DP:PL 0:8:90:8:0,90 +chrX 2631950 . G . . END=2631952 GT:DP:GQ:MIN_DP:PL 0:6:0:6:0,0 +chrX 2631953 . A . . END=2631953 GT:DP:GQ:MIN_DP:PL 0:5:90:5:0,90 +chrX 2631954 . C . . END=2631957 GT:DP:GQ:MIN_DP:PL 0:5:0:5:0,0 +chrX 2631958 . T . . END=2631958 GT:DP:GQ:MIN_DP:PL 0:3:45:3:0,45 +chrX 2631959 . C . . END=2631959 GT:DP:GQ:MIN_DP:PL 0:3:4:3:0,4 +chrX 2631960 . C . . END=2631960 GT:DP:GQ:MIN_DP:PL 0:3:35:3:0,35 +chrX 2631961 . A . . END=2631967 GT:DP:GQ:MIN_DP:PL 0:3:0:3:0,0 +chrX 2631968 . T . . END=2631968 GT:DP:GQ:MIN_DP:PL 0:6:99:6:0,178 +chrX 2631969 . A . . END=2631969 GT:DP:GQ:MIN_DP:PL 0:6:0:6:0,0 +chrX 2631970 . T . . END=2631970 GT:DP:GQ:MIN_DP:PL 0:8:99:8:0,219 +chrX 2631971 . G . . END=2631980 GT:DP:GQ:MIN_DP:PL 0:8:0:8:0,0 +chrX 2631981 . A . . END=2631982 GT:DP:GQ:MIN_DP:PL 0:9:99:9:0,258 +chrX 2631983 . C . . END=2631983 GT:DP:GQ:MIN_DP:PL 0:8:0:8:0,0 +chrX 2631984 . A . . END=2631984 GT:DP:GQ:MIN_DP:PL 0:9:99:9:0,303 +chrX 2631985 . C . . END=2631986 GT:DP:GQ:MIN_DP:PL 0:9:0:9:0,0 +chrX 2631987 . T . . END=2631987 GT:DP:GQ:MIN_DP:PL 0:10:99:10:0,348 +chrX 2631988 . C . . END=2631989 GT:DP:GQ:MIN_DP:PL 0:11:0:11:0,0 +chrX 2631990 . T . . END=2631990 GT:DP:GQ:MIN_DP:PL 0:11:99:11:0,333 +chrX 2631991 . A . . END=2631991 GT:DP:GQ:MIN_DP:PL 0:11:0:11:0,0 +chrX 2631992 . G . . END=2631994 GT:DP:GQ:MIN_DP:PL 0:11:99:11:0,352 +chrX 2631995 . T . . END=2631996 GT:DP:GQ:MIN_DP:PL 0:12:0:12:0,0 +chrX 2631997 . T . . END=2632000 GT:DP:GQ:MIN_DP:PL 0:15:99:15:0,477 +chrX 2632001 . A . . END=2632002 GT:DP:GQ:MIN_DP:PL 0:16:0:16:0,0 +chrX 2632003 . C . . END=2632007 GT:DP:GQ:MIN_DP:PL 0:15:99:15:0,442 +chrX 2632008 . T . . END=2632009 GT:DP:GQ:MIN_DP:PL 0:17:0:17:0,0 +chrX 2632010 . A . . END=2632305 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,604 +chrX 2632306 . C T, 2757.04 . AS_QUALapprox=|2767|0;AS_VarDP=0|84|0;DP=87;QUALapprox=2767;RAW_GT_COUNT=0,0,1;RAW_MQandDP=279826,87;VarDP=84 GT:AD:DP:GQ:PL:SB 1:0,84,0:84:99:2767,0,2767:0,0,39,45 +chrX 2632307 . G . . END=2632608 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,257 +chrX 2632609 . A G, 1974.04 . AS_QUALapprox=|1984|0;AS_VarDP=1|59|0;BaseQRankSum=3.377;DP=62;MQRankSum=0.000;QUALapprox=1984;RAW_GT_COUNT=0,0,1;RAW_MQandDP=222201,62;ReadPosRankSum=-0.347;VarDP=60 GT:AD:DP:GQ:PL:SB 1:1,59,0:60:99:1984,0,2008:0,1,33,26 +chrX 2632610 . G . . END=2633840 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1487 +chrX 2633841 . G A, 1448.04 . AS_QUALapprox=|1458|0;AS_VarDP=0|44|0;DP=44;QUALapprox=1458;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158400,44;VarDP=44 GT:AD:DP:GQ:PL:SB 1:0,44,0:44:99:1458,0,1458:0,0,18,26 +chrX 2633842 . T . . END=2635800 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1276 +chrX 2635801 . A G, 2571.04 . AS_QUALapprox=|2581|0;AS_VarDP=0|80|0;DP=81;QUALapprox=2581;RAW_GT_COUNT=0,0,1;RAW_MQandDP=291600,81;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,80,0:80:99:2581,0,2581:0,0,31,49 +chrX 2635802 . T . . END=2636389 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1157 +chrX 2636390 . C CA,CAA, 567.01 . AS_QUALapprox=|548|577|0;AS_VarDP=2|16|19|0;BaseQRankSum=1.966;DP=56;MQRankSum=-0.120;QUALapprox=577;RAW_GT_COUNT=0,0,1;RAW_MQandDP=199600,56;ReadPosRankSum=-0.438;VarDP=37 GT:AD:DP:GQ:PL:SB 2:2,16,19,0:37:29:577,29,0,522:1,1,21,14 +chrX 2636391 . A . . END=2636697 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1293 +chrX 2636698 . CAA C, 1031.01 . AS_QUALapprox=|1041|0;AS_VarDP=1|35|0;DP=61;MQRankSum=-0.201;QUALapprox=1041;RAW_GT_COUNT=0,0,1;RAW_MQandDP=215766,61;VarDP=36 GT:AD:DP:GQ:PL:SB 1:1,35,0:36:99:1041,0,1050:0,1,18,17 +chrX 2636701 . A . . END=2636854 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1767 +chrX 2636855 . G T, 2303.04 . AS_QUALapprox=|2313|0;AS_VarDP=0|70|0;DP=72;QUALapprox=2313;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,70,0:70:99:2313,0,2313:0,0,36,34 +chrX 2636856 . T . . END=2637527 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1678 +chrX 2637528 . G A, 2123.04 . AS_QUALapprox=|2133|0;AS_VarDP=0|64|0;DP=66;QUALapprox=2133;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,64,0:64:99:2133,0,2133:0,0,32,32 +chrX 2637529 . T . . END=2637982 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1800 +chrX 2637983 . C G, 466.04 . AS_QUALapprox=|476|0;AS_VarDP=23|38|0;BaseQRankSum=0.021;DP=64;MQRankSum=0.000;QUALapprox=476;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;ReadPosRankSum=-0.275;VarDP=61 GT:AD:DP:GQ:PL:SB 1:23,38,0:61:99:476,0,1225:11,12,12,26 +chrX 2637984 . T . . END=2638019 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1781 +chrX 2638020 . T C, 243.04 . AS_QUALapprox=|253|0;AS_VarDP=25|35|0;BaseQRankSum=-1.955;DP=65;MQRankSum=0.000;QUALapprox=253;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;ReadPosRankSum=1.373;VarDP=60 GT:AD:DP:GQ:PL:SB 1:25,35,0:60:99:253,0,1101:10,15,15,20 +chrX 2638021 . G . . END=2639106 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1603 +chrX 2639107 . C G, 292.04 . AS_QUALapprox=|302|0;AS_VarDP=30|42|0;BaseQRankSum=-1.152;DP=74;MQRankSum=0.000;QUALapprox=302;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;ReadPosRankSum=0.166;VarDP=72 GT:AD:DP:GQ:PL:SB 1:30,42,0:72:99:302,0,1284:15,15,18,24 +chrX 2639108 . A . . END=2639268 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,343 +chrX 2639269 . T C, 1944.04 . AS_QUALapprox=|1954|0;AS_VarDP=0|58|0;DP=61;QUALapprox=1954;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,58,0:58:99:1954,0,1954:0,0,32,26 +chrX 2639270 . T . . END=2639579 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1696 +chrX 2639580 . G T, 1740.04 . AS_QUALapprox=|1750|0;AS_VarDP=0|55|0;DP=58;QUALapprox=1750;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:1750,0,1750:0,0,24,31 +chrX 2639581 . A . . END=2639843 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1648 +chrX 2639844 . TACAC T, 401.01 . AS_QUALapprox=|411|0;AS_VarDP=24|34|0;BaseQRankSum=0.701;DP=60;MQRankSum=0.000;QUALapprox=411;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;ReadPosRankSum=-1.611;VarDP=58 GT:AD:DP:GQ:PL:SB 1:24,34,0:58:99:411,0,1459:11,13,19,15 +chrX 2639849 . A . . END=2640175 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1587 +chrX 2640176 . A G, 141.04 . AS_QUALapprox=|151|0;AS_VarDP=24|30|0;BaseQRankSum=-2.286;DP=57;MQRankSum=0.000;QUALapprox=151;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;ReadPosRankSum=2.247;VarDP=54 GT:AD:DP:GQ:PL:SB 1:24,30,0:54:99:151,0,983:9,15,14,16 +chrX 2640177 . A . . END=2641205 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1249 +chrX 2641206 . T G, 347.04 . AS_QUALapprox=|357|0;AS_VarDP=27|39|0;BaseQRankSum=-1.719;DP=66;MQRankSum=0.000;QUALapprox=357;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;ReadPosRankSum=-0.007;VarDP=66 GT:AD:DP:GQ:PL:SB 1:27,39,0:66:99:357,0,1284:16,11,18,21 +chrX 2641207 . T . . END=2641695 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1564 +chrX 2641696 . A G, 226.04 . AS_QUALapprox=|236|0;AS_VarDP=23|31|0;BaseQRankSum=-1.066;DP=54;MQRankSum=0.000;QUALapprox=236;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;ReadPosRankSum=-0.770;VarDP=54 GT:AD:DP:GQ:PL:SB 1:23,31,0:54:99:236,0,1015:14,9,19,12 +chrX 2641697 . G . . END=2641909 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1467 +chrX 2641910 . G C, 2180.04 . AS_QUALapprox=|2190|0;AS_VarDP=1|74|0;BaseQRankSum=-0.711;DP=76;MQRankSum=0.000;QUALapprox=2190;RAW_GT_COUNT=0,0,1;RAW_MQandDP=273025,76;ReadPosRankSum=-1.086;VarDP=75 GT:AD:DP:GQ:PL:SB 1:1,74,0:75:99:2190,0,2225:1,0,32,42 +chrX 2641911 . A . . END=2642249 GT:DP:GQ:MIN_DP:PL 0:75:99:75:0,537 +chrX 2642250 . CAAAG C, 530.01 . AS_QUALapprox=|540|0;AS_VarDP=22|34|0;BaseQRankSum=1.889;DP=60;MQRankSum=0.000;QUALapprox=540;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;ReadPosRankSum=-0.896;VarDP=56 GT:AD:DP:GQ:PL:SB 1:22,34,0:56:99:540,0,1530:8,14,13,21 +chrX 2642255 . A . . END=2642536 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,253 +chrX 2642537 . A T, 209.04 . AS_QUALapprox=|219|0;AS_VarDP=30|36|0;BaseQRankSum=0.674;DP=66;MQRankSum=0.000;QUALapprox=219;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;ReadPosRankSum=0.052;VarDP=66 GT:AD:DP:GQ:PL:SB 1:30,36,0:66:99:219,0,1216:12,18,21,15 +chrX 2642538 . C . . END=2642713 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1786 +chrX 2642714 . C T, 422.04 . AS_QUALapprox=|432|0;AS_VarDP=23|36|0;BaseQRankSum=0.575;DP=62;MQRankSum=0.000;QUALapprox=432;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;ReadPosRankSum=0.521;VarDP=59 GT:AD:DP:GQ:PL:SB 1:23,36,0:59:99:432,0,1151:13,10,18,18 +chrX 2642715 . G . . END=2642996 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1504 +chrX 2642997 . G A, 223.04 . AS_QUALapprox=|233|0;AS_VarDP=32|39|0;BaseQRankSum=0.241;DP=72;MQRankSum=0.000;QUALapprox=233;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;ReadPosRankSum=0.000;VarDP=71 GT:AD:DP:GQ:PL:SB 1:32,39,0:71:99:233,0,1255:12,20,19,20 +chrX 2642998 . T . . END=2643613 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1275 +chrX 2643614 . G A, 1553.04 . AS_QUALapprox=|1563|0;AS_VarDP=1|49|0;BaseQRankSum=-0.307;DP=52;MQRankSum=0.000;QUALapprox=1563;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;ReadPosRankSum=-1.040;VarDP=50 GT:AD:DP:GQ:PL:SB 1:1,49,0:50:99:1563,0,1598:0,1,23,26 +chrX 2643615 . C . . END=2643831 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,1240 +chrX 2643832 . G A, 169.04 . AS_QUALapprox=|179|0;AS_VarDP=20|24|0;BaseQRankSum=1.711;DP=47;MQRankSum=0.000;QUALapprox=179;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;ReadPosRankSum=0.849;VarDP=44 GT:AD:DP:GQ:PL:SB 1:20,24,0:44:99:179,0,789:9,11,10,14 +chrX 2643833 . G . . END=2643875 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,1394 +chrX 2643876 . A C, 34.04 . AS_QUALapprox=|44|0;AS_VarDP=24|25|0;BaseQRankSum=0.534;DP=52;MQRankSum=0.000;QUALapprox=44;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;ReadPosRankSum=-0.010;VarDP=49 GT:AD:DP:GQ:PL:SB 1:24,25,0:49:44:44,0,848:11,13,12,13 +chrX 2643877 . G . . END=2644011 GT:DP:GQ:MIN_DP:PL 0:46:99:46:0,1295 +chrX 2644012 . T C, 203.04 . AS_QUALapprox=|213|0;AS_VarDP=18|25|0;BaseQRankSum=-1.478;DP=45;MQRankSum=0.000;QUALapprox=213;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162000,45;ReadPosRankSum=-0.308;VarDP=43 GT:AD:DP:GQ:PL:SB 1:18,25,0:43:99:213,0,839:9,9,13,12 +chrX 2644013 . A . . END=2644094 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,1475 +chrX 2644095 . T G, 244.04 . AS_QUALapprox=|254|0;AS_VarDP=24|30|0;BaseQRankSum=0.894;DP=56;MQRankSum=0.000;QUALapprox=254;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;ReadPosRankSum=-0.836;VarDP=54 GT:AD:DP:GQ:PL:SB 1:24,30,0:54:99:254,0,993:15,9,16,14 +chrX 2644096 . C . . END=2644534 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1530 +chrX 2644535 . G A, 90.04 . AS_QUALapprox=|100|0;AS_VarDP=27|29|0;BaseQRankSum=1.104;DP=62;MQRankSum=0.000;QUALapprox=100;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;ReadPosRankSum=-1.337;VarDP=56 GT:AD:DP:GQ:PL:SB 1:27,29,0:56:99:100,0,953:17,10,16,13 +chrX 2644536 . A . . END=2644811 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1800 +chrX 2644812 . G A, 229.04 . AS_QUALapprox=|239|0;AS_VarDP=31|35|0;BaseQRankSum=2.454;DP=71;MQRankSum=-0.911;QUALapprox=239;RAW_GT_COUNT=0,0,1;RAW_MQandDP=254116,71;ReadPosRankSum=-1.375;VarDP=66 GT:AD:DP:GQ:PL:SB 1:31,35,0:66:99:239,0,1184:10,21,14,21 +chrX 2644813 . G . . END=2645404 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,153 +chrX 2645405 . A . . END=2645405 GT:DP:GQ:MIN_DP:PL 0:55:0:55:0,0 +chrX 2645406 . T . . END=2645817 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1330 +chrX 2645818 . G A, 0.01 . AS_QUALapprox=|1|0;AS_VarDP=33|32|0;BaseQRankSum=0.568;DP=68;MQRankSum=0.000;QUALapprox=1;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;ReadPosRankSum=0.617;VarDP=65 GT:AD:DP:GQ:PL:SB 1:33,32,0:65:1:1,0,1027:15,18,13,19 +chrX 2645819 . T . . END=2645909 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,179 +chrX 2645910 . G C, 1937.04 . AS_QUALapprox=|1947|0;AS_VarDP=0|60|0;DP=61;QUALapprox=1947;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:1947,0,1947:0,0,25,35 +chrX 2645911 . C . . END=2646056 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,99 +chrX 2646057 . C CA, 112.01 . AS_QUALapprox=|122|0;AS_VarDP=24|29|0;BaseQRankSum=-1.855;DP=54;MQRankSum=1.137;QUALapprox=122;RAW_GT_COUNT=0,0,1;RAW_MQandDP=193825,54;ReadPosRankSum=0.849;VarDP=53 GT:AD:DP:GQ:PL:SB 1:24,29,0:53:99:122,0,843:14,10,18,11 +chrX 2646058 . A . . END=2646222 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1756 +chrX 2646223 . T . . END=2646223 GT:DP:GQ:MIN_DP:PL 0:74:0:74:0,0 +chrX 2646224 . A . . END=2648860 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,120 +chrX 2648861 . CT C, 474.01 . AS_QUALapprox=|484|0;AS_VarDP=27|40|0;BaseQRankSum=-1.810;DP=70;MQRankSum=0.000;QUALapprox=484;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;ReadPosRankSum=-0.243;VarDP=67 GT:AD:DP:GQ:PL:SB 1:27,40,0:67:99:484,0,1428:15,12,17,23 +chrX 2648863 . T . . END=2649195 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1800 +chrX 2649196 . C G, 3438.04 . AS_QUALapprox=|3448|0;AS_VarDP=0|78|0;DP=79;QUALapprox=3448;RAW_GT_COUNT=0,0,1;RAW_MQandDP=284400,79;VarDP=78 GT:AD:DP:GQ:PL:SB 1:0,78,0:78:99:3448,0,3448:0,0,42,36 +chrX 2649197 . T . . END=2649203 GT:DP:GQ:MIN_DP:PL 0:76:99:76:0,1800 +chrX 2649204 . G C, 3379.04 . AS_QUALapprox=|3389|0;AS_VarDP=0|76|0;DP=78;QUALapprox=3389;RAW_GT_COUNT=0,0,1;RAW_MQandDP=280800,78;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,76,0:76:99:3389,0,3389:0,0,41,35 +chrX 2649205 . T . . END=2649978 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,144 +chrX 2649979 . A AGGGATGGATGGGTGGTTGGATGGATATT,AGGGATGGATGGGTGTTTGGATGGATATT, 1910.01 . AS_QUALapprox=|404|1920|0;AS_VarDP=0|1|40|0;DP=69;QUALapprox=1920;RAW_GT_COUNT=0,0,1;RAW_MQandDP=240362,69;VarDP=41 GT:AD:DP:GQ:PL:SB 2:0,1,40,0:41:99:1920,1516,0,2120:0,0,11,19 +chrX 2649980 . T . . END=2650031 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1465 +chrX 2650032 . CAGGT C, 2335.01 . AS_QUALapprox=|2345|0;AS_VarDP=0|53|0;DP=55;QUALapprox=2345;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=53 GT:AD:DP:GQ:PL:SB 1:0,53,0:53:99:2345,0,2345:0,0,18,35 +chrX 2650037 . G . . END=2650139 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1683 +chrX 2650140 . A T, 2107.04 . AS_QUALapprox=|2117|0;AS_VarDP=0|52|0;DP=52;QUALapprox=2117;RAW_GT_COUNT=0,0,1;RAW_MQandDP=186964,52;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:2117,0,2117:0,0,23,29 +chrX 2650141 . G . . END=2650162 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,1523 +chrX 2650163 . C A, 2090.04 . AS_QUALapprox=|2100|0;AS_VarDP=0|50|0;DP=50;QUALapprox=2100;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,50,0:50:99:2100,0,2100:0,0,24,26 +chrX 2650164 . T . . END=2650281 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,765 +chrX 2650282 . T . . END=2650284 GT:DP:GQ:MIN_DP:PL 0:32:0:32:0,0 +chrX 2650285 . ATGGT A, 243.04 . AS_QUALapprox=|799|0;AS_VarDP=0|21|0;DP=35;QUALapprox=799;RAW_GT_COUNT=0,0,1;RAW_MQandDP=123424,35;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:799,0,772:0,0,9,7 +chrX 2650290 . T . . END=2650392 GT:DP:GQ:MIN_DP:PL 0:43:99:43:0,1129 +chrX 2650393 . G A, 1405.04 . AS_QUALapprox=|1415|0;AS_VarDP=0|43|0;DP=43;QUALapprox=1415;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154800,43;VarDP=43 GT:AD:DP:GQ:PL:SB 1:0,43,0:43:99:1415,0,1415:0,0,19,24 +chrX 2650394 . T . . END=2651070 GT:DP:GQ:MIN_DP:PL 0:51:28:47:0,28 +chrX 2651071 . C CAT, 479.01 . AS_QUALapprox=|489|0;AS_VarDP=25|36|0;BaseQRankSum=-0.586;DP=66;MQRankSum=0.000;QUALapprox=489;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;ReadPosRankSum=-0.587;VarDP=61 GT:AD:DP:GQ:PL:SB 1:25,36,0:61:99:489,0,1614:9,16,11,25 +chrX 2651072 . T . . END=2651169 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1800 +chrX 2651170 . G C, 1956.04 . AS_QUALapprox=|1966|0;AS_VarDP=0|59|0;DP=60;QUALapprox=1966;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:1966,0,1966:0,0,31,28 +chrX 2651171 . C . . END=2651375 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1800 +chrX 2651376 . T G, 1969.04 . AS_QUALapprox=|1979|0;AS_VarDP=0|62|0;DP=63;QUALapprox=1979;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:1979,0,1979:0,0,29,33 +chrX 2651377 . C . . END=2651585 GT:DP:GQ:MIN_DP:PL 0:55:39:52:0,39 +chrX 2651586 . T C, 1335.04 . AS_QUALapprox=|1345|0;AS_VarDP=0|42|0;DP=43;QUALapprox=1345;RAW_GT_COUNT=0,0,1;RAW_MQandDP=153650,43;VarDP=42 GT:AD:DP:GQ:PL:SB 1:0,42,0:42:99:1345,0,1345:0,0,27,15 +chrX 2651587 . G . . END=2651671 GT:DP:GQ:MIN_DP:PL 0:42:99:42:0,556 +chrX 2651672 . GGAAGAAGAA G,GGAAGAA, 1017.01 . AS_QUALapprox=|774|1027|0;AS_VarDP=0|20|23|0;DP=54;QUALapprox=1027;RAW_GT_COUNT=0,0,1;RAW_MQandDP=191252,54;VarDP=43 GT:AD:DP:GQ:PL:SB 2:0,20,23,0:43:99:1027,253,0,1076:0,0,26,17 +chrX 2651682 . G . . END=2651791 GT:DP:GQ:MIN_DP:PL 0:75:99:75:0,1663 +chrX 2651792 . AT A, 1768.01 . AS_QUALapprox=|1778|0;AS_VarDP=0|63|0;DP=71;QUALapprox=1778;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,63,0:63:99:1778,0,1778:0,0,28,35 +chrX 2651794 . T . . END=2652081 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1667 +chrX 2652082 . C T, 1778.04 . AS_QUALapprox=|1788|0;AS_VarDP=0|55|0;DP=57;QUALapprox=1788;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:1788,0,1788:0,0,23,32 +chrX 2652083 . C . . END=2653683 GT:DP:GQ:MIN_DP:PL 0:73:65:63:0,65 +chrX 2653684 . C T, 120.04 . AS_QUALapprox=|130|0;AS_VarDP=20|23|0;BaseQRankSum=0.678;DP=46;MQRankSum=0.000;QUALapprox=130;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;ReadPosRankSum=-0.171;VarDP=43 GT:AD:DP:GQ:PL:SB 1:20,23,0:43:99:130,0,764:14,6,13,10 +chrX 2653685 . C . . END=2654037 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1528 +chrX 2654038 . A G, 1925.04 . AS_QUALapprox=|1935|0;AS_VarDP=0|61|0;DP=62;QUALapprox=1935;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,61,0:61:99:1935,0,1935:0,0,30,31 +chrX 2654039 . G . . END=2654382 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1572 +chrX 2654383 . G A, 186.04 . AS_QUALapprox=|196|0;AS_VarDP=25|27|0;BaseQRankSum=2.686;DP=60;MQRankSum=1.078;QUALapprox=196;RAW_GT_COUNT=0,0,1;RAW_MQandDP=213649,60;ReadPosRankSum=0.229;VarDP=52 GT:AD:DP:GQ:PL:SB 1:25,27,0:52:99:196,0,899:17,8,11,16 +chrX 2654384 . T . . END=2654392 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1682 +chrX 2654393 . GA G, 876.01 . AS_QUALapprox=|886|0;AS_VarDP=1|41|0;BaseQRankSum=-0.715;DP=66;MQRankSum=-0.112;QUALapprox=886;RAW_GT_COUNT=0,0,1;RAW_MQandDP=235249,66;ReadPosRankSum=0.619;VarDP=42 GT:AD:DP:GQ:PL:SB 1:1,41,0:42:99:886,0,911:1,0,19,22 +chrX 2654395 . A . . END=2654887 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1795 +chrX 2654888 . G A, 2673.04 . AS_QUALapprox=|2683|0;AS_VarDP=0|73|0;DP=77;QUALapprox=2683;RAW_GT_COUNT=0,0,1;RAW_MQandDP=277200,77;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,73,0:73:99:2683,0,2683:0,0,43,30 +chrX 2654889 . A . . END=2655297 GT:DP:GQ:MIN_DP:PL 0:74:99:74:0,144 +chrX 2655298 . A G, 2163.04 . AS_QUALapprox=|2173|0;AS_VarDP=1|68|0;BaseQRankSum=1.816;DP=74;MQRankSum=0.000;QUALapprox=2173;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;ReadPosRankSum=-0.753;VarDP=69 GT:AD:DP:GQ:PL:SB 1:1,68,0:69:99:2173,0,2198:0,1,33,35 +chrX 2655299 . T . . END=2657564 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,591 +chrX 2657565 . T A, 1879.04 . AS_QUALapprox=|1889|0;AS_VarDP=0|57|0;DP=58;QUALapprox=1889;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:1889,0,1889:0,0,27,30 +chrX 2657566 . T . . END=2657702 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1800 +chrX 2657703 . G A, 204.04 . AS_QUALapprox=|214|0;AS_VarDP=28|37|0;BaseQRankSum=-2.130;DP=67;MQRankSum=0.000;QUALapprox=214;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;ReadPosRankSum=-1.829;VarDP=65 GT:AD:DP:GQ:PL:SB 1:28,37,0:65:99:214,0,1141:14,14,25,12 +chrX 2657704 . T . . END=2658358 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1800 +chrX 2658359 . G A, 2530.04 . AS_QUALapprox=|2540|0;AS_VarDP=0|77|0;DP=78;QUALapprox=2540;RAW_GT_COUNT=0,0,1;RAW_MQandDP=280800,78;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,77,0:77:99:2540,0,2540:0,0,37,40 +chrX 2658360 . T . . END=2658848 GT:DP:GQ:MIN_DP:PL 0:64:31:52:0,31 +chrX 2658849 . C CT, 1761.01 . AS_QUALapprox=|1771|0;AS_VarDP=0|62|0;DP=72;QUALapprox=1771;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:1771,0,1771:0,0,31,31 +chrX 2658850 . T . . END=2658897 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1687 +chrX 2658898 . CAA C, 1678.01 . AS_QUALapprox=|1688|0;AS_VarDP=0|45|0;DP=60;QUALapprox=1688;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=45 GT:AD:DP:GQ:PL:SB 1:0,45,0:45:99:1688,0,1688:0,0,22,23 +chrX 2658901 . A . . END=2659027 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1458 +chrX 2659028 . C CGAGA, 382.01 . AS_QUALapprox=|392|0;AS_VarDP=19|28|0;BaseQRankSum=0.089;DP=57;MQRankSum=0.000;QUALapprox=392;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;ReadPosRankSum=-1.605;VarDP=47 GT:AD:DP:GQ:PL:SB 1:19,28,0:47:99:392,0,1248:6,13,11,17 +chrX 2659029 . G . . END=2659357 GT:DP:GQ:MIN_DP:PL 0:2:35:1:0,35 +chrX 2659358 . T . . END=2659358 GT:DP:GQ:MIN_DP:PL 0:2:10:2:0,10 +chrX 2659359 . T . . END=2659423 GT:DP:GQ:MIN_DP:PL 0:2:20:1:0,20 +chrX 2659424 . T . . END=2659424 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 2659425 . C . . END=2659434 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 2659435 . T . . END=2659435 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 2659436 . C . . END=2659447 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 2659448 . C . . END=2659451 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 2659452 . C . . END=2659456 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 2659457 . T . . END=2659457 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 2659458 . C . . END=2659464 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 2659465 . C . . END=2659701 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 2659702 . C . . END=2659704 GT:DP:GQ:MIN_DP:PL 0:2:45:2:0,45 +chrX 2659705 . T . . END=2659705 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 2659706 . C . . END=2659711 GT:DP:GQ:MIN_DP:PL 0:2:35:1:0,35 +chrX 2659712 . T . . END=2659712 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 2659713 . T . . END=2659717 GT:DP:GQ:MIN_DP:PL 0:2:25:1:0,25 +chrX 2659718 . T . . END=2659718 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 2659719 . C . . END=2660243 GT:DP:GQ:MIN_DP:PL 0:5:24:3:0,24 +chrX 2660244 . C T, 1717.04 . AS_QUALapprox=|1727|0;AS_VarDP=0|53|0;DP=56;QUALapprox=1727;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=53 GT:AD:DP:GQ:PL:SB 1:0,53,0:53:99:1727,0,1727:0,0,28,25 +chrX 2660245 . T . . END=2660669 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,180 +chrX 2660670 . T C, 353.04 . AS_QUALapprox=|363|0;AS_VarDP=30|41|0;BaseQRankSum=-1.823;DP=74;MQRankSum=-0.284;QUALapprox=363;RAW_GT_COUNT=0,0,1;RAW_MQandDP=264899,74;ReadPosRankSum=-0.693;VarDP=71 GT:AD:DP:GQ:PL:SB 1:30,41,0:71:99:363,0,1672:15,15,26,15 +chrX 2660671 . G . . END=2660685 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1800 +chrX 2660686 . T G, 284.04 . AS_QUALapprox=|294|0;AS_VarDP=30|38|0;BaseQRankSum=-0.531;DP=69;MQRankSum=-0.347;QUALapprox=294;RAW_GT_COUNT=0,0,1;RAW_MQandDP=246899,69;ReadPosRankSum=0.270;VarDP=68 GT:AD:DP:GQ:PL:SB 1:30,38,0:68:99:294,0,1598:14,16,24,14 +chrX 2660687 . T . . END=2661209 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1415 +chrX 2661210 . C A, 114.04 . AS_QUALapprox=|124|0;AS_VarDP=21|26|0;BaseQRankSum=-1.717;DP=49;MQRankSum=-0.856;QUALapprox=124;RAW_GT_COUNT=0,0,1;RAW_MQandDP=175825,49;ReadPosRankSum=0.578;VarDP=47 GT:AD:DP:GQ:PL:SB 1:21,26,0:47:99:124,0,844:9,12,13,13 +chrX 2661211 . T . . END=2661255 GT:DP:GQ:MIN_DP:PL 0:44:99:44:0,1335 +chrX 2661256 . G C, 284.04 . AS_QUALapprox=|294|0;AS_VarDP=18|27|0;BaseQRankSum=-0.334;DP=45;MQRankSum=-0.771;QUALapprox=294;RAW_GT_COUNT=0,0,1;RAW_MQandDP=160900,45;ReadPosRankSum=-0.406;VarDP=45 GT:AD:DP:GQ:PL:SB 1:18,27,0:45:99:294,0,899:9,9,13,14 +chrX 2661257 . C . . END=2661763 GT:DP:GQ:MIN_DP:PL 0:59:42:50:0,42 +chrX 2661764 . T C, 99.04 . AS_QUALapprox=|109|0;AS_VarDP=27|31|0;BaseQRankSum=-0.514;DP=61;MQRankSum=0.000;QUALapprox=109;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;ReadPosRankSum=-0.070;VarDP=58 GT:AD:DP:GQ:PL:SB 1:27,31,0:58:99:109,0,977:13,14,15,16 +chrX 2661765 . G . . END=2661847 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1800 +chrX 2661848 . A C, 328.04 . AS_QUALapprox=|338|0;AS_VarDP=27|37|0;BaseQRankSum=1.111;DP=68;MQRankSum=0.000;QUALapprox=338;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;ReadPosRankSum=0.700;VarDP=64 GT:AD:DP:GQ:PL:SB 1:27,37,0:64:99:338,0,1215:12,15,26,11 +chrX 2661849 . G . . END=2662031 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,164 +chrX 2662032 . CA C,CAAAAA, 428.01 . AS_QUALapprox=|0|438|0;AS_VarDP=0|8|14|0;DP=50;QUALapprox=438;RAW_GT_COUNT=0,0,1;RAW_MQandDP=171220,50;VarDP=22 GT:AD:DP:GQ:PL:SB 2:0,8,14,0:22:99:438,609,0,688:0,0,10,12 +chrX 2662034 . A . . END=2663958 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,110 +chrX 2663959 . T TAA, 114.01 . AS_QUALapprox=|124|0;AS_VarDP=20|25|0;BaseQRankSum=1.365;DP=64;MQRankSum=0.000;QUALapprox=124;RAW_GT_COUNT=0,0,1;RAW_MQandDP=229401,64;ReadPosRankSum=-0.663;VarDP=45 GT:AD:DP:GQ:PL:SB 1:20,25,0:45:99:124,0,816:7,13,13,12 +chrX 2663960 . A . . END=2664336 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,997 +chrX 2664337 . G . . END=2664337 GT:DP:GQ:MIN_DP:PL 0:49:6:49:0,6 +chrX 2664338 . T . . END=2665159 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1456 +chrX 2665160 . GCCTT G, 1046.01 . AS_QUALapprox=|1056|0;AS_VarDP=0|26|0;DP=45;QUALapprox=1056;RAW_GT_COUNT=0,0,1;RAW_MQandDP=160336,45;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:1056,0,1056:0,0,14,12 +chrX 2665165 . C . . END=2665272 GT:DP:GQ:MIN_DP:PL 0:39:99:39:0,852 +chrX 2665273 . T TTC, 2035.01 . AS_QUALapprox=|2045|0;AS_VarDP=0|46|0;DP=47;QUALapprox=2045;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;VarDP=46 GT:AD:DP:GQ:PL:SB 1:0,46,0:46:99:2045,0,2045:0,0,14,32 +chrX 2665274 . T . . END=2666023 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1558 +chrX 2666024 . A G, 2192.04 . AS_QUALapprox=|2202|0;AS_VarDP=1|71|0;BaseQRankSum=-0.520;DP=72;MQRankSum=0.000;QUALapprox=2202;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;ReadPosRankSum=1.637;VarDP=72 GT:AD:DP:GQ:PL:SB 1:1,71,0:72:99:2202,0,2237:1,0,29,42 +chrX 2666025 . T . . END=2667073 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1256 +chrX 2667074 . C T, 1946.04 . AS_QUALapprox=|1956|0;AS_VarDP=0|58|0;DP=61;QUALapprox=1956;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,58,0:58:99:1956,0,1956:0,0,28,30 +chrX 2667075 . G . . END=2667937 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1013 +chrX 2667938 . G A, 2257.04 . AS_QUALapprox=|2267|0;AS_VarDP=2|71|0;BaseQRankSum=-0.538;DP=74;MQRankSum=0.000;QUALapprox=2267;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;ReadPosRankSum=-0.524;VarDP=73 GT:AD:DP:GQ:PL:SB 1:2,71,0:73:99:2267,0,2336:0,2,39,32 +chrX 2667939 . G . . END=2668318 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1597 +chrX 2668319 . C T, 2191.04 . AS_QUALapprox=|2201|0;AS_VarDP=0|68|0;DP=69;QUALapprox=2201;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,68,0:68:99:2201,0,2201:0,0,34,34 +chrX 2668320 . C . . END=2670186 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1607 +chrX 2670187 . T A, 156.04 . AS_QUALapprox=|166|0;AS_VarDP=34|41|0;BaseQRankSum=-1.070;DP=78;MQRankSum=0.000;QUALapprox=166;RAW_GT_COUNT=0,0,1;RAW_MQandDP=280800,78;ReadPosRankSum=-0.351;VarDP=75 GT:AD:DP:GQ:PL:SB 1:34,41,0:75:99:166,0,1263:17,17,21,20 +chrX 2670188 . C . . END=2671245 GT:DP:GQ:MIN_DP:PL 0:70:22:60:0,22 +chrX 2671246 . C A, 119.04 . AS_QUALapprox=|129|0;AS_VarDP=32|35|0;BaseQRankSum=-0.095;DP=72;MQRankSum=0.000;QUALapprox=129;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;ReadPosRankSum=-0.119;VarDP=67 GT:AD:DP:GQ:PL:SB 1:32,35,0:67:99:129,0,1163:12,20,16,19 +chrX 2671247 . C . . END=2671564 GT:DP:GQ:MIN_DP:PL 0:68:54:68:0,54 +chrX 2671565 . C CTTTTT, 203.01 . AS_QUALapprox=|213|0;AS_VarDP=20|24|0;BaseQRankSum=0.695;DP=54;MQRankSum=-1.868;QUALapprox=213;RAW_GT_COUNT=0,0,1;RAW_MQandDP=188525,54;ReadPosRankSum=0.495;VarDP=44 GT:AD:DP:GQ:PL:SB 1:20,24,0:44:99:213,0,1073:10,10,11,13 +chrX 2671566 . T . . END=2671792 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,148 +chrX 2671793 . T C, 119.04 . AS_QUALapprox=|129|0;AS_VarDP=34|39|0;BaseQRankSum=-0.758;DP=75;MQRankSum=-0.906;QUALapprox=129;RAW_GT_COUNT=0,0,1;RAW_MQandDP=268425,75;ReadPosRankSum=-0.736;VarDP=73 GT:AD:DP:GQ:PL:SB 1:34,39,0:73:99:129,0,1270:13,21,24,15 +chrX 2671794 . C . . END=2672073 GT:DP:GQ:MIN_DP:PL 0:78:99:78:0,1800 +chrX 2672074 . C T, 166.04 . AS_QUALapprox=|176|0;AS_VarDP=38|40|0;BaseQRankSum=1.847;DP=82;MQRankSum=0.000;QUALapprox=176;RAW_GT_COUNT=0,0,1;RAW_MQandDP=295200,82;ReadPosRankSum=0.935;VarDP=78 GT:AD:DP:GQ:PL:SB 1:38,40,0:78:99:176,0,1329:18,20,18,22 +chrX 2672075 . T . . END=2672140 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1800 +chrX 2672141 . A C, 565.04 . AS_QUALapprox=|575|0;AS_VarDP=29|42|0;BaseQRankSum=0.294;DP=73;MQRankSum=0.000;QUALapprox=575;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;ReadPosRankSum=0.176;VarDP=71 GT:AD:DP:GQ:PL:SB 1:29,42,0:71:99:575,0,1870:16,13,16,26 +chrX 2672142 . A . . END=2672147 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1800 +chrX 2672148 . C T, 565.04 . AS_QUALapprox=|575|0;AS_VarDP=30|43|0;BaseQRankSum=-1.017;DP=74;MQRankSum=0.000;QUALapprox=575;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;ReadPosRankSum=0.446;VarDP=73 GT:AD:DP:GQ:PL:SB 1:30,43,0:73:99:575,0,1904:17,13,17,26 +chrX 2672149 . C . . END=2672564 GT:DP:GQ:MIN_DP:PL 0:61:30:60:0,30 +chrX 2672565 . A C, 47.04 . AS_QUALapprox=|57|0;AS_VarDP=28|33|0;BaseQRankSum=-2.067;DP=62;MQRankSum=1.572;QUALapprox=57;RAW_GT_COUNT=0,0,1;RAW_MQandDP=222050,62;ReadPosRankSum=-0.847;VarDP=61 GT:AD:DP:GQ:PL:SB 1:28,33,0:61:57:57,0,1011:20,8,13,20 +chrX 2672566 . G . . END=2673087 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1757 +chrX 2673088 . G A, 16.04 . AS_QUALapprox=|26|0;AS_VarDP=37|36|0;BaseQRankSum=0.816;DP=74;MQRankSum=0.000;QUALapprox=26;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;ReadPosRankSum=0.348;VarDP=73 GT:AD:DP:GQ:PL:SB 1:37,36,0:73:26:26,0,1146:13,24,19,17 +chrX 2673089 . T . . END=2673550 GT:DP:GQ:MIN_DP:PL 0:76:99:76:0,1800 +chrX 2673551 . A T, 606.04 . AS_QUALapprox=|616|0;AS_VarDP=24|44|0;BaseQRankSum=-1.788;DP=71;MQRankSum=0.000;QUALapprox=616;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;ReadPosRankSum=-0.533;VarDP=68 GT:AD:DP:GQ:PL:SB 1:24,44,0:68:99:616,0,1439:14,10,20,24 +chrX 2673552 . A . . END=2673846 GT:DP:GQ:MIN_DP:PL 0:73:99:73:0,1777 +chrX 2673847 . T A, 0.13 . AS_QUALapprox=|7|0;AS_VarDP=28|31|0;BaseQRankSum=-2.041;DP=62;MQRankSum=0.000;QUALapprox=7;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;ReadPosRankSum=1.549;VarDP=59 GT:AD:DP:GQ:PL:SB 1:28,31,0:59:7:7,0,972:16,12,16,15 +chrX 2673848 . T . . END=2674059 GT:DP:GQ:MIN_DP:PL 0:66:44:66:0,44 +chrX 2674060 . T . . END=2674080 GT:DP:GQ:MIN_DP:PL 0:47:0:47:0,0 +chrX 2674081 . G . . END=2674148 GT:DP:GQ:MIN_DP:PL 0:43:99:43:0,1136 +chrX 2674149 . A ATT, 143.01 . AS_QUALapprox=|153|0;AS_VarDP=16|22|0;BaseQRankSum=1.154;DP=45;MQRankSum=0.000;QUALapprox=153;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162000,45;ReadPosRankSum=-2.603;VarDP=38 GT:AD:DP:GQ:PL:SB 1:16,22,0:38:99:153,0,767:6,10,14,8 +chrX 2674150 . T . . END=2674281 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,1349 +chrX 2674282 . GGTT G, 394.01 . AS_QUALapprox=|404|0;AS_VarDP=14|23|0;BaseQRankSum=-0.739;DP=43;MQRankSum=-0.724;QUALapprox=404;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154225,43;ReadPosRankSum=1.300;VarDP=37 GT:AD:DP:GQ:PL:SB 1:14,23,0:37:99:404,0,1034:10,4,14,9 +chrX 2674286 . G . . END=2674590 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1261 +chrX 2674591 . C T, 335.04 . AS_QUALapprox=|345|0;AS_VarDP=29|38|0;BaseQRankSum=1.481;DP=69;MQRankSum=0.000;QUALapprox=345;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;ReadPosRankSum=1.310;VarDP=67 GT:AD:DP:GQ:PL:SB 1:29,38,0:67:99:345,0,1260:11,18,16,22 +chrX 2674592 . G . . END=2674781 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1800 +chrX 2674782 . C T, 183.04 . AS_QUALapprox=|193|0;AS_VarDP=28|32|0;BaseQRankSum=1.610;DP=64;MQRankSum=-0.902;QUALapprox=193;RAW_GT_COUNT=0,0,1;RAW_MQandDP=229825,64;ReadPosRankSum=-0.845;VarDP=60 GT:AD:DP:GQ:PL:SB 1:28,32,0:60:99:193,0,1032:10,18,21,11 +chrX 2674783 . G . . END=2675056 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,988 +chrX 2675057 . CAA C,CA,CAAAAA, 44.01 . AS_QUALapprox=|0|54|0|0;AS_VarDP=0|5|4|5|0;DP=45;QUALapprox=54;RAW_GT_COUNT=0,0,1;RAW_MQandDP=149928,45;VarDP=14 GT:AD:DP:GQ:PL:SB 2:0,5,4,5,0:14:54:54,156,0,114,120:0,0,12,2 +chrX 2675060 . A . . END=2675429 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1394 +chrX 2675430 . C G, 94.04 . AS_QUALapprox=|104|0;AS_VarDP=31|34|0;BaseQRankSum=0.195;DP=69;MQRankSum=0.000;QUALapprox=104;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;ReadPosRankSum=0.624;VarDP=65 GT:AD:DP:GQ:PL:SB 1:31,34,0:65:99:104,0,1106:17,14,20,14 +chrX 2675431 . T . . END=2675577 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1154 +chrX 2675578 . C CTTTT, 501.01 . AS_QUALapprox=|511|0;AS_VarDP=2|16|0;BaseQRankSum=1.273;DP=50;MQRankSum=-0.541;QUALapprox=511;RAW_GT_COUNT=0,0,1;RAW_MQandDP=170561,50;ReadPosRankSum=-0.652;VarDP=18 GT:AD:DP:GQ:PL:SB 1:2,16,0:18:99:511,0,603:0,2,6,10 +chrX 2675579 . T . . END=2675711 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,650 +chrX 2675712 . A G, 173.04 . AS_QUALapprox=|183|0;AS_VarDP=28|33|0;BaseQRankSum=0.063;DP=64;MQRankSum=0.000;QUALapprox=183;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;ReadPosRankSum=1.100;VarDP=61 GT:AD:DP:GQ:PL:SB 1:28,33,0:61:99:183,0,1031:17,11,21,12 +chrX 2675713 . C . . END=2675969 GT:DP:GQ:MIN_DP:PL 0:76:99:76:0,1800 +chrX 2675970 . C A, 138.04 . AS_QUALapprox=|148|0;AS_VarDP=34|40|0;BaseQRankSum=-0.449;DP=75;MQRankSum=0.000;QUALapprox=148;RAW_GT_COUNT=0,0,1;RAW_MQandDP=270000,75;ReadPosRankSum=0.673;VarDP=74 GT:AD:DP:GQ:PL:SB 1:34,40,0:74:99:148,0,1240:12,22,20,20 +chrX 2675971 . C . . END=2677017 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1723 +chrX 2677018 . G A, 129.04 . AS_QUALapprox=|139|0;AS_VarDP=33|35|0;BaseQRankSum=1.372;DP=70;MQRankSum=0.000;QUALapprox=139;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;ReadPosRankSum=-0.706;VarDP=68 GT:AD:DP:GQ:PL:SB 1:33,35,0:68:99:139,0,1155:14,19,15,20 +chrX 2677019 . A . . END=2677141 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1800 +chrX 2677142 . C CTT, 204.01 . AS_QUALapprox=|214|0;AS_VarDP=22|30|0;BaseQRankSum=1.625;DP=62;MQRankSum=0.000;QUALapprox=214;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;ReadPosRankSum=0.037;VarDP=52 GT:AD:DP:GQ:PL:SB 1:22,30,0:52:99:214,0,1046:10,12,17,13 +chrX 2677143 . T . . END=2678331 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1195 +chrX 2678332 . C G, 20.04 . AS_QUALapprox=|30|0;AS_VarDP=23|23|0;BaseQRankSum=1.798;DP=48;MQRankSum=0.000;QUALapprox=30;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;ReadPosRankSum=0.440;VarDP=46 GT:AD:DP:GQ:PL:SB 1:23,23,0:46:30:30,0,799:8,15,9,14 +chrX 2678333 . T . . END=2678373 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,1404 +chrX 2678374 . T G, 2241.04 . AS_QUALapprox=|2251|0;AS_VarDP=0|59|0;DP=59;QUALapprox=2251;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:2251,0,2251:0,0,23,36 +chrX 2678375 . A . . END=2678377 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1800 +chrX 2678378 . G A, 59.04 . AS_QUALapprox=|69|0;AS_VarDP=30|30|0;BaseQRankSum=1.517;DP=62;MQRankSum=0.000;QUALapprox=69;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;ReadPosRankSum=-0.710;VarDP=60 GT:AD:DP:GQ:PL:SB 1:30,30,0:60:69:69,0,997:14,16,12,18 +chrX 2678379 . C . . END=2678532 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,202 +chrX 2678533 . T . . END=2678533 GT:DP:GQ:MIN_DP:PL 0:50:0:50:0,0 +chrX 2678534 . G . . END=2678680 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1501 +chrX 2678681 . C G, 1936.04 . AS_QUALapprox=|1946|0;AS_VarDP=0|52|0;DP=52;QUALapprox=1946;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:1946,0,1946:0,0,25,27 +chrX 2678682 . G . . END=2679133 GT:DP:GQ:MIN_DP:PL 0:53:38:51:0,38 +chrX 2679134 . T A, 1895.04 . AS_QUALapprox=|1905|0;AS_VarDP=0|58|0;DP=59;QUALapprox=1905;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,58,0:58:99:1905,0,1905:0,0,28,30 +chrX 2679135 . T . . END=2679449 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,1120 +chrX 2679450 . T TG, 1864.01 . AS_QUALapprox=|1874|0;AS_VarDP=0|53|0;DP=59;QUALapprox=1874;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=53 GT:AD:DP:GQ:PL:SB 1:0,53,0:53:99:1874,0,1874:0,0,29,24 +chrX 2679451 . G . . END=2680355 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1800 +chrX 2680356 . C A, 635.04 . AS_QUALapprox=|645|0;AS_VarDP=20|40|0;BaseQRankSum=0.010;DP=62;MQRankSum=0.000;QUALapprox=645;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;ReadPosRankSum=1.365;VarDP=60 GT:AD:DP:GQ:PL:SB 1:20,40,0:60:99:645,0,1290:13,7,23,17 +chrX 2680357 . G . . END=2680539 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,388 +chrX 2680540 . A G, 1894.04 . AS_QUALapprox=|1904|0;AS_VarDP=0|59|0;DP=61;QUALapprox=1904;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:1904,0,1904:0,0,36,23 +chrX 2680541 . G . . END=2680602 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1800 +chrX 2680603 . CATCT C, 305.01 . AS_QUALapprox=|315|0;AS_VarDP=25|32|0;BaseQRankSum=-2.505;DP=61;MQRankSum=0.000;QUALapprox=315;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;ReadPosRankSum=-0.108;VarDP=57 GT:AD:DP:GQ:PL:SB 1:25,32,0:57:99:315,0,1440:11,14,19,13 +chrX 2680608 . A . . END=2680623 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1800 +chrX 2680624 . G A, 322.04 . AS_QUALapprox=|332|0;AS_VarDP=30|38|0;BaseQRankSum=-0.320;DP=71;MQRankSum=0.000;QUALapprox=332;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;ReadPosRankSum=1.184;VarDP=68 GT:AD:DP:GQ:PL:SB 1:30,38,0:68:99:332,0,1579:13,17,23,15 +chrX 2680625 . T . . END=2681277 GT:DP:GQ:MIN_DP:PL 0:55:48:51:0,48 +chrX 2681278 . G A, 1587.04 . AS_QUALapprox=|1597|0;AS_VarDP=0|50|0;DP=51;QUALapprox=1597;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,50,0:50:99:1597,0,1597:0,0,30,20 +chrX 2681279 . T . . END=2681855 GT:DP:GQ:MIN_DP:PL 0:58:90:58:0,90 +chrX 2681856 . CTT C, 566.01 . AS_QUALapprox=|576|0;AS_VarDP=21|34|0;BaseQRankSum=0.229;DP=56;MQRankSum=0.000;QUALapprox=576;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;ReadPosRankSum=0.234;VarDP=55 GT:AD:DP:GQ:PL:SB 1:21,34,0:55:99:576,0,1520:12,9,16,18 +chrX 2681859 . T . . END=2682275 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1687 +chrX 2682276 . T C, 2993.04 . AS_QUALapprox=|3003|0;AS_VarDP=0|67|0;DP=68;QUALapprox=3003;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,67,0:67:99:3003,0,3003:0,0,33,34 +chrX 2682277 . G . . END=2682277 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1800 +chrX 2682278 . G A, 2993.04 . AS_QUALapprox=|3003|0;AS_VarDP=0|67|0;DP=67;QUALapprox=3003;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,67,0:67:99:3003,0,3003:0,0,33,34 +chrX 2682279 . T . . END=2682345 GT:DP:GQ:MIN_DP:PL 0:76:99:76:0,1800 +chrX 2682346 . A G, 2629.04 . AS_QUALapprox=|2639|0;AS_VarDP=0|81|0;DP=83;QUALapprox=2639;RAW_GT_COUNT=0,0,1;RAW_MQandDP=298800,83;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,81,0:81:99:2639,0,2639:0,0,36,45 +chrX 2682347 . A . . END=2683891 GT:DP:GQ:MIN_DP:PL 0:70:90:70:0,90 +chrX 2683892 . T C, 286.04 . AS_QUALapprox=|296|0;AS_VarDP=13|22|0;BaseQRankSum=-0.702;DP=36;MQRankSum=1.274;QUALapprox=296;RAW_GT_COUNT=0,0,1;RAW_MQandDP=116338,36;ReadPosRankSum=0.051;VarDP=35 GT:AD:DP:GQ:PL:SB 1:13,22,0:35:99:296,0,722:7,6,10,12 +chrX 2683893 . C . . END=2684318 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,718 +chrX 2684319 . T C, 90.04 . AS_QUALapprox=|100|0;AS_VarDP=26|30|0;BaseQRankSum=-1.896;DP=57;MQRankSum=0.000;QUALapprox=100;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;ReadPosRankSum=0.411;VarDP=56 GT:AD:DP:GQ:PL:SB 1:26,30,0:56:99:100,0,1003:16,10,18,12 +chrX 2684320 . G . . END=2684513 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1458 +chrX 2684514 . T C, 246.04 . AS_QUALapprox=|256|0;AS_VarDP=29|37|0;BaseQRankSum=-1.131;DP=69;MQRankSum=0.000;QUALapprox=256;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;ReadPosRankSum=0.355;VarDP=66 GT:AD:DP:GQ:PL:SB 1:29,37,0:66:99:256,0,1244:12,17,17,20 +chrX 2684515 . A . . END=2684604 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1800 +chrX 2684605 . T C, 131.04 . AS_QUALapprox=|141|0;AS_VarDP=28|33|0;BaseQRankSum=-0.860;DP=65;MQRankSum=0.000;QUALapprox=141;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;ReadPosRankSum=-0.369;VarDP=61 GT:AD:DP:GQ:PL:SB 1:28,33,0:61:99:141,0,1100:12,16,17,16 +chrX 2684606 . T . . END=2684789 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,1518 +chrX 2684790 . C CATT, 1882.01 . AS_QUALapprox=|1892|0;AS_VarDP=0|43|0;DP=58;QUALapprox=1892;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=43 GT:AD:DP:GQ:PL:SB 1:0,43,0:43:99:1892,0,1893:0,0,16,27 +chrX 2684791 . A . . END=2684869 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1702 +chrX 2684870 . G A, 84.04 . AS_QUALapprox=|94|0;AS_VarDP=28|32|0;BaseQRankSum=-1.025;DP=62;MQRankSum=0.000;QUALapprox=94;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;ReadPosRankSum=1.608;VarDP=60 GT:AD:DP:GQ:PL:SB 1:28,32,0:60:94:94,0,1047:17,11,20,12 +chrX 2684871 . T . . END=2685495 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1622 +chrX 2685496 . C CT, 54.01 . AS_QUALapprox=|64|0;AS_VarDP=21|24|0;BaseQRankSum=-2.637;DP=52;MQRankSum=0.000;QUALapprox=64;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;ReadPosRankSum=2.254;VarDP=45 GT:AD:DP:GQ:PL:SB 1:21,24,0:45:64:64,0,590:11,10,10,14 +chrX 2685497 . T . . END=2686274 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,326 +chrX 2686275 . C T, 180.04 . AS_QUALapprox=|190|0;AS_VarDP=23|28|0;BaseQRankSum=1.260;DP=57;MQRankSum=0.000;QUALapprox=190;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;ReadPosRankSum=0.455;VarDP=51 GT:AD:DP:GQ:PL:SB 1:23,28,0:51:99:190,0,959:12,11,17,11 +chrX 2686276 . G . . END=2686464 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1485 +chrX 2686465 . T C, 122.04 . AS_QUALapprox=|132|0;AS_VarDP=34|43|0;BaseQRankSum=-2.231;DP=82;MQRankSum=-0.863;QUALapprox=132;RAW_GT_COUNT=0,0,1;RAW_MQandDP=294625,82;ReadPosRankSum=-0.462;VarDP=77 GT:AD:DP:GQ:PL:SB 1:34,43,0:77:99:132,0,1233:14,20,14,29 +chrX 2686466 . G . . END=2688387 GT:DP:GQ:MIN_DP:PL 0:73:75:73:0,75 +chrX 2688388 . T . . END=2688388 GT:DP:GQ:MIN_DP:PL 0:81:0:81:0,0 +chrX 2688389 . T . . END=2689242 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1468 +chrX 2689243 . G C, 1892.04 . AS_QUALapprox=|1902|0;AS_VarDP=0|59|0;DP=59;QUALapprox=1902;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:1902,0,1902:0,0,23,36 +chrX 2689244 . G . . END=2690093 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1628 +chrX 2690094 . G A, 1911.04 . AS_QUALapprox=|1921|0;AS_VarDP=0|58|0;DP=59;QUALapprox=1921;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,58,0:58:99:1921,0,1921:0,0,20,38 +chrX 2690095 . G . . END=2690433 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,163 +chrX 2690434 . C . . END=2690435 GT:DP:GQ:MIN_DP:PL 0:69:0:69:0,0 +chrX 2690436 . C . . END=2690783 GT:DP:GQ:MIN_DP:PL 0:66:34:63:0,34 +chrX 2690784 . A C, 226.04 . AS_QUALapprox=|236|0;AS_VarDP=16|26|0;BaseQRankSum=-2.781;DP=42;MQRankSum=-0.735;QUALapprox=236;RAW_GT_COUNT=0,0,1;RAW_MQandDP=150304,42;ReadPosRankSum=1.399;VarDP=42 GT:AD:DP:GQ:PL:SB 1:16,26,0:42:99:236,0,787:9,7,13,13 +chrX 2690785 . G . . END=2690850 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,761 +chrX 2690851 . T G, 912.04 . AS_QUALapprox=|922|0;AS_VarDP=0|29|0;DP=29;QUALapprox=922;RAW_GT_COUNT=0,0,1;RAW_MQandDP=102825,29;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:922,0,922:0,0,18,11 +chrX 2690852 . G . . END=2690938 GT:DP:GQ:MIN_DP:PL 0:47:99:47:0,898 +chrX 2690939 . G C, 105.04 . AS_QUALapprox=|115|0;AS_VarDP=21|23|0;BaseQRankSum=1.280;DP=46;MQRankSum=0.000;QUALapprox=115;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;ReadPosRankSum=-1.258;VarDP=44 GT:AD:DP:GQ:PL:SB 1:21,23,0:44:99:115,0,759:9,12,10,13 +chrX 2690940 . C . . END=2691153 GT:DP:GQ:MIN_DP:PL 0:52:62:47:0,62 +chrX 2691154 . G A, 135.04 . AS_QUALapprox=|145|0;AS_VarDP=23|27|0;BaseQRankSum=0.258;DP=55;MQRankSum=0.000;QUALapprox=145;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;ReadPosRankSum=0.136;VarDP=50 GT:AD:DP:GQ:PL:SB 1:23,27,0:50:99:145,0,831:13,10,16,11 +chrX 2691155 . G . . END=2691261 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1771 +chrX 2691262 . C T, 391.04 . AS_QUALapprox=|401|0;AS_VarDP=31|45|0;BaseQRankSum=-1.255;DP=79;MQRankSum=0.000;QUALapprox=401;RAW_GT_COUNT=0,0,1;RAW_MQandDP=284400,79;ReadPosRankSum=-0.730;VarDP=76 GT:AD:DP:GQ:PL:SB 1:31,45,0:76:99:401,0,1439:17,14,31,14 +chrX 2691263 . C . . END=2691501 GT:DP:GQ:MIN_DP:PL 0:78:99:78:0,1800 +chrX 2691502 . G A, 245.04 . AS_QUALapprox=|255|0;AS_VarDP=37|47|0;BaseQRankSum=-2.244;DP=85;MQRankSum=0.000;QUALapprox=255;RAW_GT_COUNT=0,0,1;RAW_MQandDP=306000,85;ReadPosRankSum=-0.730;VarDP=84 GT:AD:DP:GQ:PL:SB 1:37,47,0:84:99:255,0,1521:14,23,25,22 +chrX 2691503 . C . . END=2691941 GT:DP:GQ:MIN_DP:PL 0:66:85:66:0,85 +chrX 2691942 . T C, 1929.04 . AS_QUALapprox=|1939|0;AS_VarDP=0|61|0;DP=62;QUALapprox=1939;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,61,0:61:99:1939,0,1939:0,0,38,23 +chrX 2691943 . G . . END=2693203 GT:DP:GQ:MIN_DP:PL 0:52:24:45:0,24 +chrX 2693204 . A G, 88.04 . AS_QUALapprox=|98|0;AS_VarDP=20|25|0;BaseQRankSum=-1.356;DP=45;MQRankSum=0.000;QUALapprox=98;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162000,45;ReadPosRankSum=0.388;VarDP=45 GT:AD:DP:GQ:PL:SB 1:20,25,0:45:98:98,0,743:10,10,17,8 +chrX 2693205 . C . . END=2694518 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1288 +chrX 2694519 . AG A, 1802.01 . AS_QUALapprox=|1812|0;AS_VarDP=0|51|0;DP=53;QUALapprox=1812;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190225,53;VarDP=51 GT:AD:DP:GQ:PL:SB 1:0,51,0:51:99:1812,0,1812:0,0,28,23 +chrX 2694521 . G . . END=2694752 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1318 +chrX 2694753 . A C, 1612.04 . AS_QUALapprox=|1622|0;AS_VarDP=0|51|0;DP=54;QUALapprox=1622;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=51 GT:AD:DP:GQ:PL:SB 1:0,51,0:51:99:1622,0,1622:0,0,18,33 +chrX 2694754 . A . . END=2695237 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1463 +chrX 2695238 . C T, 1599.04 . AS_QUALapprox=|1609|0;AS_VarDP=1|50|0;BaseQRankSum=-0.411;DP=53;MQRankSum=0.000;QUALapprox=1609;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;ReadPosRankSum=0.238;VarDP=51 GT:AD:DP:GQ:PL:SB 1:1,50,0:51:99:1609,0,1644:0,1,31,19 +chrX 2695239 . T . . END=2695534 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1800 +chrX 2695535 . T C, 2017.04 . AS_QUALapprox=|2027|0;AS_VarDP=0|66|0;DP=66;QUALapprox=2027;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237025,66;VarDP=66 GT:AD:DP:GQ:PL:SB 1:0,66,0:66:99:2027,0,2027:0,0,28,38 +chrX 2695536 . G . . END=2695636 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1702 +chrX 2695637 . C CTT, 1484.01 . AS_QUALapprox=|1494|0;AS_VarDP=0|37|0;DP=47;QUALapprox=1494;RAW_GT_COUNT=0,0,1;RAW_MQandDP=167200,47;VarDP=37 GT:AD:DP:GQ:PL:SB 1:0,37,0:37:99:1494,0,1495:0,0,22,15 +chrX 2695638 . T . . END=2695658 GT:DP:GQ:MIN_DP:PL 0:46:99:46:0,1122 +chrX 2695659 . T A, 1504.04 . AS_QUALapprox=|1514|0;AS_VarDP=0|39|0;DP=43;QUALapprox=1514;RAW_GT_COUNT=0,0,1;RAW_MQandDP=152800,43;VarDP=39 GT:AD:DP:GQ:PL:SB 1:0,39,0:39:99:1514,0,1514:0,0,22,17 +chrX 2695660 . G . . END=2696040 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,1298 +chrX 2696041 . A G, 1837.04 . AS_QUALapprox=|1847|0;AS_VarDP=0|60|0;DP=60;QUALapprox=1847;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:1847,0,1847:0,0,28,32 +chrX 2696042 . G . . END=2696177 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1548 +chrX 2696178 . A G, 1587.04 . AS_QUALapprox=|1597|0;AS_VarDP=0|50|0;DP=52;QUALapprox=1597;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,50,0:50:99:1597,0,1597:0,0,29,21 +chrX 2696179 . A . . END=2696225 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1489 +chrX 2696226 . T C, 1681.04 . AS_QUALapprox=|1691|0;AS_VarDP=0|52|0;DP=55;QUALapprox=1691;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:1691,0,1691:0,0,30,22 +chrX 2696227 . G . . END=2696438 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1551 +chrX 2696439 . T C, 1495.04 . AS_QUALapprox=|1505|0;AS_VarDP=0|45|0;DP=45;QUALapprox=1505;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162000,45;VarDP=45 GT:AD:DP:GQ:PL:SB 1:0,45,0:45:99:1505,0,1505:0,0,27,18 +chrX 2696440 . C . . END=2697337 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1299 +chrX 2697338 . C T, 1964.04 . AS_QUALapprox=|1974|0;AS_VarDP=0|59|0;DP=62;QUALapprox=1974;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:1974,0,1974:0,0,23,36 +chrX 2697339 . G . . END=2697474 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1800 +chrX 2697475 . T C, 2848.04 . AS_QUALapprox=|2858|0;AS_VarDP=0|64|0;DP=66;QUALapprox=2858;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,64,0:64:99:2858,0,2858:0,0,32,32 +chrX 2697476 . T . . END=2697481 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1800 +chrX 2697482 . A G, 2874.04 . AS_QUALapprox=|2884|0;AS_VarDP=0|65|0;DP=66;QUALapprox=2884;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,65,0:65:99:2884,0,2884:0,0,32,33 +chrX 2697483 . G . . END=2697945 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1441 +chrX 2697946 . T C, 1588.04 . AS_QUALapprox=|1598|0;AS_VarDP=0|48|0;DP=51;QUALapprox=1598;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=48 GT:AD:DP:GQ:PL:SB 1:0,48,0:48:99:1598,0,1598:0,0,27,21 +chrX 2697947 . C . . END=2699361 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1239 +chrX 2699362 . A G, 1635.04 . AS_QUALapprox=|1645|0;AS_VarDP=0|51|0;DP=55;QUALapprox=1645;RAW_GT_COUNT=0,0,1;RAW_MQandDP=195625,55;VarDP=51 GT:AD:DP:GQ:PL:SB 1:0,51,0:51:99:1645,0,1645:0,0,25,26 +chrX 2699363 . T . . END=2703604 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1091 +chrX 2703605 . AGTGTGT A, 1971.01 . AS_QUALapprox=|1981|0;AS_VarDP=1|45|0;DP=61;MQRankSum=0.000;QUALapprox=1981;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=46 GT:AD:DP:GQ:PL:SB 1:1,45,0:46:99:1981,0,2004:0,1,26,19 +chrX 2703612 . G . . END=2704348 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1473 +chrX 2704349 . C T, 260.04 . AS_QUALapprox=|270|0;AS_VarDP=27|34|0;BaseQRankSum=0.848;DP=61;MQRankSum=0.000;QUALapprox=270;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;ReadPosRankSum=0.617;VarDP=61 GT:AD:DP:GQ:PL:SB 1:27,34,0:61:99:270,0,1122:11,16,17,17 +chrX 2704350 . G . . END=2706062 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1271 +chrX 2706063 . G A,GAA, 1726.01 . AS_QUALapprox=|157|1736|0;AS_VarDP=0|4|45|0;DP=60;QUALapprox=1736;RAW_GT_COUNT=0,0,1;RAW_MQandDP=211197,60;VarDP=49 GT:AD:DP:GQ:PL:SB 2:0,4,45,0:49:99:1736,1579,0,1691:0,0,25,24 +chrX 2706064 . A . . END=2706144 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1598 +chrX 2706145 . T G, 1765.04 . AS_QUALapprox=|1775|0;AS_VarDP=0|55|0;DP=55;QUALapprox=1775;RAW_GT_COUNT=0,0,1;RAW_MQandDP=191445,55;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:1775,0,1775:0,0,32,23 +chrX 2706146 . T . . END=2706353 GT:DP:GQ:MIN_DP:PL 0:73:99:73:0,1767 +chrX 2706354 . T C, 3061.04 . AS_QUALapprox=|3071|0;AS_VarDP=0|71|0;DP=72;QUALapprox=3071;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,71,0:71:99:3071,0,3071:0,0,22,49 +chrX 2706355 . G . . END=2706367 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1800 +chrX 2706368 . G A, 3225.04 . AS_QUALapprox=|3235|0;AS_VarDP=0|76|0;DP=76;QUALapprox=3235;RAW_GT_COUNT=0,0,1;RAW_MQandDP=273600,76;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,76,0:76:99:3235,0,3235:0,0,30,46 +chrX 2706369 . A . . END=2706425 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1800 +chrX 2706426 . A G, 2217.04 . AS_QUALapprox=|2227|0;AS_VarDP=1|71|0;BaseQRankSum=-0.566;DP=74;MQRankSum=0.000;QUALapprox=2227;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;ReadPosRankSum=0.578;VarDP=72 GT:AD:DP:GQ:PL:SB 1:1,71,0:72:99:2227,0,2261:1,0,35,36 +chrX 2706427 . A . . END=2706482 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1800 +chrX 2706483 . C T, 2229.04 . AS_QUALapprox=|2239|0;AS_VarDP=1|68|0;BaseQRankSum=-0.344;DP=73;MQRankSum=0.000;QUALapprox=2239;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;ReadPosRankSum=-1.231;VarDP=69 GT:AD:DP:GQ:PL:SB 1:1,68,0:69:99:2239,0,2273:1,0,37,31 +chrX 2706484 . T . . END=2707348 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,109 +chrX 2707349 . G GAA,GAAAAGAA,GAAAAGAAAAGAA, 150.01 . AS_QUALapprox=|0|160|0|0;AS_VarDP=18|0|20|0|0;BaseQRankSum=-1.952;DP=53;MQRankSum=0.000;QUALapprox=160;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;ReadPosRankSum=2.135;VarDP=38 GT:AD:DP:GQ:PL:SB 2:18,0,20,0,0:38:99:160,1082,0,808,900:12,6,9,11 +chrX 2707350 . A . . END=2707401 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1464 +chrX 2707402 . C A, 1927.04 . AS_QUALapprox=|1937|0;AS_VarDP=0|60|0;DP=66;QUALapprox=1937;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:1937,0,1937:0,0,29,31 +chrX 2707403 . C . . END=2708120 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1522 +chrX 2708121 . T C, 1996.04 . AS_QUALapprox=|2006|0;AS_VarDP=0|60|0;DP=64;QUALapprox=2006;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:2006,0,2006:0,0,31,29 +chrX 2708122 . C . . END=2708660 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1478 +chrX 2708661 . A G, 1851.04 . AS_QUALapprox=|1861|0;AS_VarDP=0|56|0;DP=56;QUALapprox=1861;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,56,0:56:99:1861,0,1861:0,0,32,24 +chrX 2708662 . C . . END=2709309 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1405 +chrX 2709310 . GCA G, 2502.01 . AS_QUALapprox=|2512|0;AS_VarDP=0|56|0;DP=56;QUALapprox=2512;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,56,0:56:99:2512,0,2512:0,0,30,26 +chrX 2709313 . C . . END=2709662 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1800 +chrX 2709663 . T C, 2248.04 . AS_QUALapprox=|2258|0;AS_VarDP=0|69|0;DP=73;QUALapprox=2258;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,69,0:69:99:2258,0,2258:0,0,32,37 +chrX 2709664 . A . . END=2709696 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1800 +chrX 2709697 . A AACATAGACACACACATGCATGT, 2252.01 . AS_QUALapprox=|2262|0;AS_VarDP=0|55|0;DP=73;QUALapprox=2262;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:2262,0,2269:0,0,29,26 +chrX 2709698 . A . . END=2709787 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1795 +chrX 2709788 . C G, 2123.04 . AS_QUALapprox=|2133|0;AS_VarDP=0|68|0;DP=70;QUALapprox=2133;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,68,0:68:99:2133,0,2133:0,0,42,26 +chrX 2709789 . A . . END=2710159 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1761 +chrX 2710160 . A G, 1935.04 . AS_QUALapprox=|1945|0;AS_VarDP=0|59|0;DP=61;QUALapprox=1945;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:1945,0,1945:0,0,33,26 +chrX 2710161 . C . . END=2710174 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1699 +chrX 2710175 . T TC, 1984.01 . AS_QUALapprox=|1994|0;AS_VarDP=0|54|0;DP=58;QUALapprox=1994;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=54 GT:AD:DP:GQ:PL:SB 1:0,54,0:54:99:1994,0,1994:0,0,31,23 +chrX 2710176 . C . . END=2710280 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,1443 +chrX 2710281 . A G, 58.04 . AS_QUALapprox=|68|0;AS_VarDP=20|22|0;BaseQRankSum=0.102;DP=44;MQRankSum=0.000;QUALapprox=68;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158400,44;ReadPosRankSum=-1.335;VarDP=42 GT:AD:DP:GQ:PL:SB 1:20,22,0:42:68:68,0,753:11,9,7,15 +chrX 2710282 . C . . END=2710513 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1305 +chrX 2710514 . G GTTTT, 3025.01 . AS_QUALapprox=|3035|0;AS_VarDP=0|69|0;DP=73;QUALapprox=3035;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,69,0:69:99:3035,0,3035:0,0,36,33 +chrX 2710515 . T . . END=2710627 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1507 +chrX 2710628 . C . . END=2710628 GT:DP:GQ:MIN_DP:PL 0:55:0:55:0,0 +chrX 2710629 . A . . END=2710866 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1226 +chrX 2710867 . C CT, 485.01 . AS_QUALapprox=|495|0;AS_VarDP=0|27|0;DP=43;QUALapprox=495;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151693,43;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:495,0,495:0,0,14,13 +chrX 2710868 . T . . END=2710949 GT:DP:GQ:MIN_DP:PL 0:39:99:39:0,720 +chrX 2710950 . A G, 1274.04 . AS_QUALapprox=|1284|0;AS_VarDP=0|42|0;DP=43;QUALapprox=1284;RAW_GT_COUNT=0,0,1;RAW_MQandDP=153650,43;VarDP=42 GT:AD:DP:GQ:PL:SB 1:0,42,0:42:99:1284,0,1284:0,0,21,21 +chrX 2710951 . A . . END=2711036 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,1319 +chrX 2711037 . A G, 1439.04 . AS_QUALapprox=|1449|0;AS_VarDP=1|45|0;BaseQRankSum=1.950;DP=51;MQRankSum=0.000;QUALapprox=1449;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183025,51;ReadPosRankSum=-1.206;VarDP=46 GT:AD:DP:GQ:PL:SB 1:1,45,0:46:99:1449,0,1474:1,0,25,20 +chrX 2711038 . T . . END=2711410 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1429 +chrX 2711411 . AT A, 1695.01 . AS_QUALapprox=|1705|0;AS_VarDP=1|48|0;BaseQRankSum=0.000;DP=53;MQRankSum=0.000;QUALapprox=1705;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;ReadPosRankSum=0.071;VarDP=49 GT:AD:DP:GQ:PL:SB 1:1,48,0:49:99:1705,0,1742:0,1,31,17 +chrX 2711413 . T . . END=2712339 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1395 +chrX 2712340 . G A, 1965.04 . AS_QUALapprox=|1975|0;AS_VarDP=0|59|0;DP=62;QUALapprox=1975;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:1975,0,1975:0,0,25,34 +chrX 2712341 . T . . END=2712578 GT:DP:GQ:MIN_DP:PL 0:77:99:77:0,1800 +chrX 2712579 . A G, 2168.04 . AS_QUALapprox=|2178|0;AS_VarDP=0|69|0;DP=70;QUALapprox=2178;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,69,0:69:99:2178,0,2178:0,0,32,37 +chrX 2712580 . T . . END=2712993 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1720 +chrX 2712994 . A G, 2173.04 . AS_QUALapprox=|2183|0;AS_VarDP=0|69|0;DP=71;QUALapprox=2183;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,69,0:69:99:2183,0,2183:0,0,32,37 +chrX 2712995 . T . . END=2713130 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1782 +chrX 2713131 . TACAC T, 2784.01 . AS_QUALapprox=|2794|0;AS_VarDP=0|64|0;DP=68;QUALapprox=2794;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,64,0:64:99:2794,0,2794:0,0,39,25 +chrX 2713136 . A . . END=2713399 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1761 +chrX 2713400 . CACAT C, 2601.01 . AS_QUALapprox=|2611|0;AS_VarDP=0|58|0;DP=63;QUALapprox=2611;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,58,0:58:99:2611,0,2611:0,0,26,32 +chrX 2713405 . A . . END=2713458 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1800 +chrX 2713459 . T C, 2152.04 . AS_QUALapprox=|2162|0;AS_VarDP=0|65|0;DP=67;QUALapprox=2162;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,65,0:65:99:2162,0,2162:0,0,36,29 +chrX 2713460 . C . . END=2714147 GT:DP:GQ:MIN_DP:PL 0:74:99:74:0,1800 +chrX 2714148 . A G, 2267.04 . AS_QUALapprox=|2277|0;AS_VarDP=0|71|0;DP=72;QUALapprox=2277;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,71,0:71:99:2277,0,2277:0,0,35,36 +chrX 2714149 . T . . END=2714230 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1800 +chrX 2714231 . A T, 2218.04 . AS_QUALapprox=|2228|0;AS_VarDP=0|68|0;DP=71;QUALapprox=2228;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,68,0:68:99:2228,0,2228:0,0,32,36 +chrX 2714232 . C . . END=2714780 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1459 +chrX 2714781 . G A, 2085.04 . AS_QUALapprox=|2095|0;AS_VarDP=0|62|0;DP=65;QUALapprox=2095;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:2095,0,2095:0,0,31,31 +chrX 2714782 . C . . END=2715252 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1575 +chrX 2715253 . G A, 1920.04 . AS_QUALapprox=|1930|0;AS_VarDP=0|59|0;DP=61;QUALapprox=1930;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:1930,0,1930:0,0,33,26 +chrX 2715254 . G . . END=2715432 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1800 +chrX 2715433 . A G, 2188.04 . AS_QUALapprox=|2198|0;AS_VarDP=0|67|0;DP=69;QUALapprox=2198;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,67,0:67:99:2198,0,2198:0,0,31,36 +chrX 2715434 . C . . END=2715565 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1765 +chrX 2715566 . A G, 2109.04 . AS_QUALapprox=|2119|0;AS_VarDP=0|64|0;DP=67;QUALapprox=2119;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,64,0:64:99:2119,0,2119:0,0,24,40 +chrX 2715567 . A . . END=2715582 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1800 +chrX 2715583 . C G, 2095.04 . AS_QUALapprox=|2105|0;AS_VarDP=0|64|0;DP=66;QUALapprox=2105;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,64,0:64:99:2105,0,2105:0,0,26,38 +chrX 2715584 . T . . END=2715759 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1800 +chrX 2715760 . T C, 2883.04 . AS_QUALapprox=|2893|0;AS_VarDP=0|66|0;DP=66;QUALapprox=2893;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234784,66;VarDP=66 GT:AD:DP:GQ:PL:SB 1:0,66,0:66:99:2893,0,2893:0,0,46,20 +chrX 2715761 . C . . END=2715762 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1800 +chrX 2715763 . C G, 2950.04 . AS_QUALapprox=|2960|0;AS_VarDP=0|69|0;DP=69;QUALapprox=2960;RAW_GT_COUNT=0,0,1;RAW_MQandDP=245584,69;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,69,0:69:99:2960,0,2960:0,0,47,22 +chrX 2715764 . G . . END=2715791 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1800 +chrX 2715792 . G C, 2103.04 . AS_QUALapprox=|2113|0;AS_VarDP=0|66|0;DP=68;QUALapprox=2113;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;VarDP=66 GT:AD:DP:GQ:PL:SB 1:0,66,0:66:99:2113,0,2113:0,0,42,24 +chrX 2715793 . T . . END=2717083 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,353 +chrX 2717084 . A C, 1811.04 . AS_QUALapprox=|1821|0;AS_VarDP=0|57|0;DP=58;QUALapprox=1821;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208009,58;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,57,0:57:99:1821,0,1821:0,0,29,28 +chrX 2717085 . G . . END=2717346 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1523 +chrX 2717347 . C CAA, 1259.01 . AS_QUALapprox=|1269|0;AS_VarDP=0|41|0;DP=59;QUALapprox=1269;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=41 GT:AD:DP:GQ:PL:SB 1:0,41,0:41:99:1269,0,1269:0,0,25,16 +chrX 2717348 . A . . END=2717447 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1711 +chrX 2717448 . G C, 2079.04 . AS_QUALapprox=|2089|0;AS_VarDP=0|64|0;DP=65;QUALapprox=2089;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,64,0:64:99:2089,0,2089:0,0,30,34 +chrX 2717449 . T . . END=2717936 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1314 +chrX 2717937 . CTTT C, 872.01 . AS_QUALapprox=|882|0;AS_VarDP=1|22|0;BaseQRankSum=1.115;DP=36;MQRankSum=0.000;QUALapprox=882;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129136,36;ReadPosRankSum=-1.585;VarDP=23 GT:AD:DP:GQ:PL:SB 1:1,22,0:23:99:882,0,892:1,0,4,18 +chrX 2717941 . T . . END=2718033 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,868 +chrX 2718034 . C T, 1749.04 . AS_QUALapprox=|1759|0;AS_VarDP=1|41|0;BaseQRankSum=-0.294;DP=42;MQRankSum=0.000;QUALapprox=1759;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151200,42;ReadPosRankSum=-0.330;VarDP=42 GT:AD:DP:GQ:PL:SB 1:1,41,0:42:99:1759,0,1804:1,0,15,26 +chrX 2718035 . G . . END=2718040 GT:DP:GQ:MIN_DP:PL 0:42:99:42:0,1354 +chrX 2718041 . A G, 1808.04 . AS_QUALapprox=|1818|0;AS_VarDP=1|43|0;BaseQRankSum=-0.298;DP=45;MQRankSum=0.000;QUALapprox=1818;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162000,45;ReadPosRankSum=-0.676;VarDP=44 GT:AD:DP:GQ:PL:SB 1:1,43,0:44:99:1818,0,1863:1,0,16,27 +chrX 2718042 . G . . END=2718209 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,1414 +chrX 2718210 . G C, 1987.04 . AS_QUALapprox=|1997|0;AS_VarDP=0|63|0;DP=68;QUALapprox=1997;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,63,0:63:99:1997,0,1997:0,0,41,22 +chrX 2718211 . G . . END=2718493 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1033 +chrX 2718494 . A G, 1657.04 . AS_QUALapprox=|1667|0;AS_VarDP=0|53|0;DP=56;QUALapprox=1667;RAW_GT_COUNT=0,0,1;RAW_MQandDP=196332,56;VarDP=53 GT:AD:DP:GQ:PL:SB 1:0,53,0:53:99:1667,0,1667:0,0,27,26 +chrX 2718495 . A . . END=2719188 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1800 +chrX 2719189 . T C, 2045.04 . AS_QUALapprox=|2055|0;AS_VarDP=0|62|0;DP=65;QUALapprox=2055;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:2055,0,2055:0,0,33,29 +chrX 2719190 . G . . END=2719397 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1588 +chrX 2719398 . T TC, 1518.01 . AS_QUALapprox=|1528|0;AS_VarDP=0|47|0;DP=52;QUALapprox=1528;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=47 GT:AD:DP:GQ:PL:SB 1:0,47,0:47:99:1528,0,1528:0,0,25,22 +chrX 2719399 . C . . END=2720070 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1553 +chrX 2720071 . T G, 1899.04 . AS_QUALapprox=|1909|0;AS_VarDP=0|59|0;DP=60;QUALapprox=1909;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:1909,0,1909:0,0,29,30 +chrX 2720072 . A . . END=2720619 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,318 +chrX 2720620 . CT C,CTT, 257.01 . AS_QUALapprox=|0|267|0;AS_VarDP=0|10|21|0;DP=52;QUALapprox=267;RAW_GT_COUNT=0,0,1;RAW_MQandDP=186964,52;VarDP=31 GT:AD:DP:GQ:PL:SB 2:0,10,21,0:31:99:267,269,0,414:0,0,18,13 +chrX 2720622 . T . . END=2720776 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,544 +chrX 2720777 . G . . END=2720777 GT:DP:GQ:MIN_DP:PL 0:65:9:65:0,9 +chrX 2720778 . C . . END=2720985 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,1548 +chrX 2720986 . T G, 1677.04 . AS_QUALapprox=|1687|0;AS_VarDP=0|52|0;DP=54;QUALapprox=1687;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:1687,0,1687:0,0,19,33 +chrX 2720987 . A . . END=2723160 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1594 +chrX 2723161 . A C, 2033.04 . AS_QUALapprox=|2043|0;AS_VarDP=0|64|0;DP=68;QUALapprox=2043;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,64,0:64:99:2043,0,2043:0,0,37,27 +chrX 2723162 . G . . END=2725049 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,1058 +chrX 2725050 . A G, 1705.04 . AS_QUALapprox=|1715|0;AS_VarDP=1|55|0;BaseQRankSum=1.604;DP=57;MQRankSum=4.440;QUALapprox=1715;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201075,57;ReadPosRankSum=-1.300;VarDP=56 GT:AD:DP:GQ:PL:SB 1:1,55,0:56:99:1715,0,1740:1,0,33,22 +chrX 2725051 . G . . END=2727324 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1457 +chrX 2727325 . G C, 1923.04 . AS_QUALapprox=|1933|0;AS_VarDP=0|61|0;DP=61;QUALapprox=1933;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,61,0:61:99:1933,0,1933:0,0,28,33 +chrX 2727326 . G . . END=2730053 GT:DP:GQ:MIN_DP:PL 0:67:33:60:0,33 +chrX 2730054 . C T, 2289.04 . AS_QUALapprox=|2299|0;AS_VarDP=1|71|0;BaseQRankSum=2.264;DP=73;MQRankSum=0.000;QUALapprox=2299;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;ReadPosRankSum=-0.481;VarDP=72 GT:AD:DP:GQ:PL:SB 1:1,71,0:72:99:2299,0,2308:0,1,31,40 +chrX 2730055 . G . . END=2730174 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1157 +chrX 2730175 . CT C, 617.01 . AS_QUALapprox=|627|0;AS_VarDP=1|25|0;BaseQRankSum=2.147;DP=36;MQRankSum=3.750;QUALapprox=627;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126116,36;ReadPosRankSum=-0.133;VarDP=26 GT:AD:DP:GQ:PL:SB 1:1,25,0:26:99:627,0,645:0,1,10,15 +chrX 2730177 . T . . END=2730928 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,806 +chrX 2730929 . CA C, 365.01 . AS_QUALapprox=|375|0;AS_VarDP=3|20|0;DP=46;MQRankSum=-0.624;QUALapprox=375;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158037,46;VarDP=23 GT:AD:DP:GQ:PL:SB 1:3,20,0:23:99:375,0,438:0,3,9,11 +chrX 2730931 . A . . END=2731611 GT:DP:GQ:MIN_DP:PL 0:76:99:76:0,1434 +chrX 2731612 . A T, 2119.04 . AS_QUALapprox=|2129|0;AS_VarDP=0|65|0;DP=70;QUALapprox=2129;RAW_GT_COUNT=0,0,1;RAW_MQandDP=251425,70;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,65,0:65:99:2129,0,2129:0,0,33,32 +chrX 2731613 . C . . END=2731790 GT:DP:GQ:MIN_DP:PL 0:75:99:75:0,1800 +chrX 2731791 . C T, 2174.04 . AS_QUALapprox=|2184|0;AS_VarDP=0|66|0;DP=66;QUALapprox=2184;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=66 GT:AD:DP:GQ:PL:SB 1:0,66,0:66:99:2184,0,2184:0,0,27,39 +chrX 2731792 . T . . END=2731969 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1652 +chrX 2731970 . T TA, 1209.01 . AS_QUALapprox=|1219|0;AS_VarDP=0|47|0;DP=59;QUALapprox=1219;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=47 GT:AD:DP:GQ:PL:SB 1:0,47,0:47:99:1219,0,1219:0,0,25,22 +chrX 2731971 . A . . END=2732241 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1587 +chrX 2732242 . C T, 1622.04 . AS_QUALapprox=|1632|0;AS_VarDP=0|50|0;DP=51;QUALapprox=1632;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,50,0:50:99:1632,0,1632:0,0,26,24 +chrX 2732243 . G . . END=2732268 GT:DP:GQ:MIN_DP:PL 0:52:99:52:0,1604 +chrX 2732269 . A G, 1840.04 . AS_QUALapprox=|1850|0;AS_VarDP=0|59|0;DP=62;QUALapprox=1850;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:1850,0,1850:0,0,29,30 +chrX 2732270 . C . . END=2737090 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,591 +chrX 2737091 . T C, 1736.04 . AS_QUALapprox=|1746|0;AS_VarDP=0|55|0;DP=56;QUALapprox=1746;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:1746,0,1746:0,0,19,36 +chrX 2737092 . G . . END=2737281 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1723 +chrX 2737282 . A T, 39.04 . AS_QUALapprox=|49|0;AS_VarDP=28|30|0;BaseQRankSum=-0.379;DP=60;MQRankSum=1.070;QUALapprox=49;RAW_GT_COUNT=0,0,1;RAW_MQandDP=215425,60;ReadPosRankSum=-0.973;VarDP=58 GT:AD:DP:GQ:PL:SB 1:28,30,0:58:49:49,0,943:15,13,18,12 +chrX 2737283 . T . . END=2737309 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1612 +chrX 2737310 . G T, 157.04 . AS_QUALapprox=|167|0;AS_VarDP=25|28|0;BaseQRankSum=1.328;DP=56;MQRankSum=1.096;QUALapprox=167;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201025,56;ReadPosRankSum=-1.275;VarDP=53 GT:AD:DP:GQ:PL:SB 1:25,28,0:53:99:167,0,892:14,11,14,14 +chrX 2737311 . G . . END=2737425 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1438 +chrX 2737426 . T TG, 1764.01 . AS_QUALapprox=|1774|0;AS_VarDP=0|50|0;DP=51;QUALapprox=1774;RAW_GT_COUNT=0,0,1;RAW_MQandDP=179025,51;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,50,0:50:99:1774,0,1774:0,0,19,31 +chrX 2737427 . G . . END=2737563 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1647 +chrX 2737564 . G A, 224.04 . AS_QUALapprox=|234|0;AS_VarDP=31|37|0;BaseQRankSum=0.722;DP=69;MQRankSum=1.578;QUALapprox=234;RAW_GT_COUNT=0,0,1;RAW_MQandDP=246475,69;ReadPosRankSum=-0.148;VarDP=68 GT:AD:DP:GQ:PL:SB 1:31,37,0:68:99:234,0,1226:16,15,24,13 +chrX 2737565 . G . . END=2738219 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1529 +chrX 2738220 . A G, 1.45 . AS_QUALapprox=|11|0;AS_VarDP=31|31|0;BaseQRankSum=1.864;DP=63;MQRankSum=0.000;QUALapprox=11;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;ReadPosRankSum=0.732;VarDP=62 GT:AD:DP:GQ:PL:SB 1:31,31,0:62:11:11,0,1353:17,14,15,16 +chrX 2738221 . T . . END=2742606 GT:DP:GQ:MIN_DP:PL 0:61:34:58:0,34 +chrX 2742607 . G . . END=2742607 GT:DP:GQ:MIN_DP:PL 0:54:0:54:0,0 +chrX 2742608 . T . . END=2743481 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,158 +chrX 2743482 . G A, 422.04 . AS_QUALapprox=|432|0;AS_VarDP=28|41|0;BaseQRankSum=-0.460;DP=71;MQRankSum=0.000;QUALapprox=432;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;ReadPosRankSum=-0.031;VarDP=69 GT:AD:DP:GQ:PL:SB 1:28,41,0:69:99:432,0,1325:12,16,19,22 +chrX 2743483 . G . . END=2743514 GT:DP:GQ:MIN_DP:PL 0:76:99:76:0,1800 +chrX 2743515 . A C, 113.04 . AS_QUALapprox=|123|0;AS_VarDP=38|39|0;BaseQRankSum=2.334;DP=81;MQRankSum=0.000;QUALapprox=123;RAW_GT_COUNT=0,0,1;RAW_MQandDP=291600,81;ReadPosRankSum=1.233;VarDP=77 GT:AD:DP:GQ:PL:SB 1:38,39,0:77:99:123,0,1336:16,22,18,21 +chrX 2743516 . C . . END=2744987 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,862 +chrX 2744988 . T TA, 38.01 . AS_QUALapprox=|48|0;AS_VarDP=12|16|0;BaseQRankSum=1.238;DP=41;MQRankSum=0.000;QUALapprox=48;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147600,41;ReadPosRankSum=-0.864;VarDP=28 GT:AD:DP:GQ:PL:SB 1:12,16,0:28:48:48,0,325:7,5,6,10 +chrX 2744989 . A . . END=2745434 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,858 +chrX 2745435 . C CTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG,CTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG, 129.01 . AS_QUALapprox=|139|13|0;AS_VarDP=16|5|0|0;BaseQRankSum=0.891;DP=48;MQRankSum=-3.190;QUALapprox=139;RAW_GT_COUNT=0,0,1;RAW_MQandDP=160788,48;ReadPosRankSum=-0.166;VarDP=21 GT:AD:DP:GQ:PL:SB 1:16,5,0,0:21:99:139,0,126,495:12,4,5,0 +chrX 2745436 . T . . END=2745926 GT:DP:GQ:MIN_DP:PL 0:63:70:63:0,70 +chrX 2745927 . G A, 482.04 . AS_QUALapprox=|492|0;AS_VarDP=34|49|0;BaseQRankSum=0.206;DP=84;MQRankSum=0.000;QUALapprox=492;RAW_GT_COUNT=0,0,1;RAW_MQandDP=302400,84;ReadPosRankSum=1.603;VarDP=83 GT:AD:DP:GQ:PL:SB 1:34,49,0:83:99:492,0,1498:20,14,21,28 +chrX 2745928 . C . . END=2747075 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,328 +chrX 2747076 . G . . END=2747076 GT:DP:GQ:MIN_DP:PL 0:64:10:64:0,10 +chrX 2747077 . A . . END=2748844 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,204 +chrX 2748845 . T C, 95.04 . AS_QUALapprox=|105|0;AS_VarDP=30|32|0;BaseQRankSum=0.826;DP=64;MQRankSum=0.000;QUALapprox=105;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;ReadPosRankSum=-0.972;VarDP=62 GT:AD:DP:GQ:PL:SB 1:30,32,0:62:99:105,0,1057:13,17,10,22 +chrX 2748846 . T . . END=2749116 GT:DP:GQ:MIN_DP:PL 0:47:99:47:0,124 +chrX 2749117 . TTCCCTCCCTCCCTCCCTCCC T, 4.04 . AS_QUALapprox=|14|0;AS_VarDP=8|8|0;BaseQRankSum=0.639;DP=25;MQRankSum=0.000;QUALapprox=14;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;ReadPosRankSum=1.370;VarDP=16 GT:AD:DP:GQ:PL:SB 1:8,8,0:16:14:14,0,353:0,8,0,8 +chrX 2749138 . T . . END=2749235 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,339 +chrX 2749236 . C . . END=2749236 GT:DP:GQ:MIN_DP:PL 0:24:0:24:0,0 +chrX 2749237 . C . . END=2749500 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,585 +chrX 2749501 . T C, 307.04 . AS_QUALapprox=|317|0;AS_VarDP=16|27|0;BaseQRankSum=-1.353;DP=46;MQRankSum=1.347;QUALapprox=317;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165025,46;ReadPosRankSum=-1.496;VarDP=43 GT:AD:DP:GQ:PL:SB 1:16,27,0:43:99:317,0,863:8,8,13,14 +chrX 2749502 . C . . END=2750076 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1315 +chrX 2750077 . T C, 125.04 . AS_QUALapprox=|135|0;AS_VarDP=30|35|0;BaseQRankSum=-0.869;DP=69;MQRankSum=0.000;QUALapprox=135;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;ReadPosRankSum=0.112;VarDP=65 GT:AD:DP:GQ:PL:SB 1:30,35,0:65:99:135,0,1126:13,17,16,19 +chrX 2750078 . G . . END=2750125 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1672 +chrX 2750126 . G A, 317.04 . AS_QUALapprox=|327|0;AS_VarDP=20|31|0;BaseQRankSum=-0.902;DP=54;MQRankSum=0.000;QUALapprox=327;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;ReadPosRankSum=0.261;VarDP=51 GT:AD:DP:GQ:PL:SB 1:20,31,0:51:99:327,0,1002:7,13,12,19 +chrX 2750127 . C . . END=2750695 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,125 +chrX 2750696 . A ACACACATGCACACG, 20 . AS_QUALapprox=|30|0;AS_VarDP=28|29|0;BaseQRankSum=0.248;DP=75;MQRankSum=0.000;QUALapprox=30;RAW_GT_COUNT=0,0,1;RAW_MQandDP=270000,75;ReadPosRankSum=-0.319;VarDP=57 GT:AD:DP:GQ:PL:SB 1:28,29,0:57:30:30,0,1284:15,13,16,13 +chrX 2750697 . C . . END=2751621 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,744 +chrX 2751622 . T TGTC, 540.01 . AS_QUALapprox=|550|0;AS_VarDP=25|37|0;BaseQRankSum=-0.297;DP=67;MQRankSum=-2.456;QUALapprox=550;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223393,67;ReadPosRankSum=0.560;VarDP=62 GT:AD:DP:GQ:PL:SB 1:25,37,0:62:99:550,0,1645:13,12,13,24 +chrX 2751623 . A . . END=2753324 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1404 +chrX 2753325 . A G, 451.04 . AS_QUALapprox=|461|0;AS_VarDP=21|36|0;BaseQRankSum=-1.945;DP=59;MQRankSum=2.158;QUALapprox=461;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205718,59;ReadPosRankSum=1.283;VarDP=57 GT:AD:DP:GQ:PL:SB 1:21,36,0:57:99:461,0,1191:11,10,13,23 +chrX 2753326 . C . . END=2753508 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1777 +chrX 2753509 . A . . END=2753509 GT:DP:GQ:MIN_DP:PL 0:64:1:64:0,1 +chrX 2753510 . C . . END=2753726 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1339 +chrX 2753727 . T C, 88.04 . AS_QUALapprox=|98|0;AS_VarDP=22|27|0;BaseQRankSum=-1.526;DP=54;MQRankSum=-4.427;QUALapprox=98;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162423,54;ReadPosRankSum=-0.332;VarDP=49 GT:AD:DP:GQ:PL:SB 1:22,27,0:49:98:98,0,818:9,13,17,10 +chrX 2753728 . G . . END=2755880 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,537 +chrX 2755881 . T C, 107.04 . AS_QUALapprox=|117|0;AS_VarDP=30|32|0;BaseQRankSum=1.925;DP=67;MQRankSum=-7.090;QUALapprox=117;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162421,67;ReadPosRankSum=0.712;VarDP=62 GT:AD:DP:GQ:PL:SB 1:30,32,0:62:99:117,0,1074:15,15,11,21 +chrX 2755882 . G . . END=2756705 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1538 +chrX 2756706 . G C, 197.04 . AS_QUALapprox=|207|0;AS_VarDP=27|32|0;BaseQRankSum=1.238;DP=60;MQRankSum=0.000;QUALapprox=207;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;ReadPosRankSum=0.830;VarDP=59 GT:AD:DP:GQ:PL:SB 1:27,32,0:59:99:207,0,1075:15,12,19,13 +chrX 2756707 . C . . END=2758118 GT:DP:GQ:MIN_DP:PL 0:50:30:47:0,30 +chrX 2758119 . T C, 505.04 . AS_QUALapprox=|515|0;AS_VarDP=21|39|0;BaseQRankSum=-2.505;DP=61;MQRankSum=3.499;QUALapprox=515;RAW_GT_COUNT=0,0,1;RAW_MQandDP=206405,61;ReadPosRankSum=-0.039;VarDP=60 GT:AD:DP:GQ:PL:SB 1:21,39,0:60:99:515,0,1239:11,10,24,15 +chrX 2758120 . G . . END=2758873 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1688 +chrX 2758874 . C G, 1823.04 . AS_QUALapprox=|1833|0;AS_VarDP=0|59|0;DP=62;QUALapprox=1833;RAW_GT_COUNT=0,0,1;RAW_MQandDP=217493,62;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:1833,0,1833:0,0,29,30 +chrX 2758875 . A . . END=2758955 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1713 +chrX 2758956 . T TTATC, 2299.01 . AS_QUALapprox=|2309|0;AS_VarDP=0|52|0;DP=57;QUALapprox=2309;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:2309,0,2309:0,0,32,20 +chrX 2758957 . T . . END=2759031 GT:DP:GQ:MIN_DP:PL 0:51:99:51:0,1492 +chrX 2759032 . GTATC G, 1306.01 . AS_QUALapprox=|1316|0;AS_VarDP=3|41|0;BaseQRankSum=2.460;DP=52;MQRankSum=1.849;QUALapprox=1316;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169536,52;ReadPosRankSum=1.288;VarDP=44 GT:AD:DP:GQ:PL:SB 1:3,41,0:44:99:1316,0,1360:0,3,22,19 +chrX 2759037 . T . . END=2759049 GT:DP:GQ:MIN_DP:PL 0:50:99:50:0,1430 +chrX 2759050 . G A, 1594.04 . AS_QUALapprox=|2220|0;AS_VarDP=0|53|0;DP=54;QUALapprox=2220;RAW_GT_COUNT=0,0,1;RAW_MQandDP=170871,54;VarDP=53 GT:AD:DP:GQ:PL:SB 1:0,53,0:53:99:2220,0,1936:0,0,26,22 +chrX 2759051 . T . . END=2759092 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1494 +chrX 2759093 . G A, 3118.04 . AS_QUALapprox=|3128|0;AS_VarDP=0|72|0;DP=73;QUALapprox=3128;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237834,73;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,72,0:72:99:3128,0,3128:0,0,36,36 +chrX 2759094 . T C, 153.04 . AS_QUALapprox=|163|0;AS_VarDP=33|39|0;BaseQRankSum=-0.545;DP=73;MQRankSum=4.325;QUALapprox=163;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237834,73;ReadPosRankSum=-0.950;VarDP=72 GT:AD:DP:GQ:PL:SB 1:33,39,0:72:99:163,0,1250:18,15,18,21 +chrX 2759095 . G . . END=2759112 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,1800 +chrX 2759113 . A T, 3199.04 . AS_QUALapprox=|3209|0;AS_VarDP=0|72|0;DP=73;QUALapprox=3209;RAW_GT_COUNT=0,0,1;RAW_MQandDP=238730,73;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,72,0:72:99:3209,0,3209:0,0,34,38 +chrX 2759114 . G . . END=2759120 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1800 +chrX 2759121 . T C, 3210.04 . AS_QUALapprox=|3220|0;AS_VarDP=0|72|0;DP=74;QUALapprox=3220;RAW_GT_COUNT=0,0,1;RAW_MQandDP=242330,74;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,72,0:72:99:3220,0,3220:0,0,33,39 +chrX 2759122 . T . . END=2759131 GT:DP:GQ:MIN_DP:PL 0:73:99:73:0,1800 +chrX 2759132 . G . . END=2759132 GT:DP:GQ:MIN_DP:PL 0:77:9:77:0,9 +chrX 2759133 . A . . END=2759818 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,100 +chrX 2759819 . A T, 283.04 . AS_QUALapprox=|293|0;AS_VarDP=28|37|0;BaseQRankSum=-0.489;DP=67;MQRankSum=-6.885;QUALapprox=293;RAW_GT_COUNT=0,0,1;RAW_MQandDP=184873,67;ReadPosRankSum=-0.371;VarDP=65 GT:AD:DP:GQ:PL:SB 1:28,37,0:65:99:293,0,1245:11,17,22,15 +chrX 2759820 . A . . END=2759954 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1800 +chrX 2759955 . T TCTGCATGTGGC, 728.01 . AS_QUALapprox=|738|0;AS_VarDP=28|45|0;BaseQRankSum=-1.767;DP=76;MQRankSum=-0.761;QUALapprox=738;RAW_GT_COUNT=0,0,1;RAW_MQandDP=273481,76;ReadPosRankSum=-1.810;VarDP=73 GT:AD:DP:GQ:PL:SB 1:28,45,0:73:99:738,0,1999:19,9,20,25 +chrX 2759956 . C . . END=2760733 GT:DP:GQ:MIN_DP:PL 0:42:46:41:0,46 +chrX 2760734 . CA C, 273.01 . AS_QUALapprox=|283|0;AS_VarDP=6|19|0;BaseQRankSum=0.713;DP=56;MQRankSum=-0.468;QUALapprox=283;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194784,56;ReadPosRankSum=0.718;VarDP=25 GT:AD:DP:GQ:PL:SB 1:6,19,0:25:99:283,0,386:2,4,15,4 +chrX 2760736 . A . . END=2761051 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1269 +chrX 2761052 . T C, 273.04 . AS_QUALapprox=|283|0;AS_VarDP=32|41|0;BaseQRankSum=-0.731;DP=74;MQRankSum=0.000;QUALapprox=283;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;ReadPosRankSum=-0.751;VarDP=73 GT:AD:DP:GQ:PL:SB 1:32,41,0:73:99:283,0,1295:14,18,15,26 +chrX 2761053 . T . . END=2762257 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,1425 +chrX 2762258 . T G, 1997.04 . AS_QUALapprox=|2007|0;AS_VarDP=0|62|0;DP=63;QUALapprox=2007;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:2007,0,2007:0,0,33,29 +chrX 2762259 . G . . END=2762729 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1642 +chrX 2762730 . A G, 2043.04 . AS_QUALapprox=|2053|0;AS_VarDP=0|64|0;DP=69;QUALapprox=2053;RAW_GT_COUNT=0,0,1;RAW_MQandDP=246407,69;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,64,0:64:99:2053,0,2053:0,0,35,29 +chrX 2762731 . C . . END=2763470 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1396 +chrX 2763471 . A G, 1416.04 . AS_QUALapprox=|1426|0;AS_VarDP=0|47|0;DP=49;QUALapprox=1426;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=47 GT:AD:DP:GQ:PL:SB 1:0,47,0:47:99:1426,0,1426:0,0,31,16 +chrX 2763472 . T . . END=2763509 GT:DP:GQ:MIN_DP:PL 0:42:99:42:0,1146 +chrX 2763510 . C G, 1554.04 . AS_QUALapprox=|1564|0;AS_VarDP=0|47|0;DP=48;QUALapprox=1564;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=47 GT:AD:DP:GQ:PL:SB 1:0,47,0:47:99:1564,0,1564:0,0,28,19 +chrX 2763511 . G . . END=2763890 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1534 +chrX 2763891 . T G, 172.04 . AS_QUALapprox=|182|0;AS_VarDP=28|33|0;BaseQRankSum=0.642;DP=63;MQRankSum=0.000;QUALapprox=182;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;ReadPosRankSum=0.007;VarDP=61 GT:AD:DP:GQ:PL:SB 1:28,33,0:61:99:182,0,1115:17,11,20,13 +chrX 2763892 . T . . END=2763976 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1800 +chrX 2763977 . G A, 1970.04 . AS_QUALapprox=|1980|0;AS_VarDP=0|61|0;DP=64;QUALapprox=1980;RAW_GT_COUNT=0,0,1;RAW_MQandDP=214400,64;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,61,0:61:99:1980,0,1980:0,0,34,27 +chrX 2763978 . G . . END=2764107 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1800 +chrX 2764108 . T C, 2318.04 . AS_QUALapprox=|2328|0;AS_VarDP=0|71|0;DP=75;QUALapprox=2328;RAW_GT_COUNT=0,0,1;RAW_MQandDP=221136,75;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,71,0:71:99:2328,0,2328:0,0,31,40 +chrX 2764109 . G . . END=2764134 GT:DP:GQ:MIN_DP:PL 0:73:99:73:0,1800 +chrX 2764135 . T G, 2499.04 . AS_QUALapprox=|2509|0;AS_VarDP=0|75|0;DP=78;QUALapprox=2509;RAW_GT_COUNT=0,0,1;RAW_MQandDP=251420,78;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,75,0:75:99:2509,0,2509:0,0,32,43 +chrX 2764136 . G . . END=2764777 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,348 +chrX 2764778 . T C, 168.04 . AS_QUALapprox=|178|0;AS_VarDP=24|30|0;BaseQRankSum=-0.883;DP=57;MQRankSum=-0.857;QUALapprox=178;RAW_GT_COUNT=0,0,1;RAW_MQandDP=204409,57;ReadPosRankSum=1.054;VarDP=54 GT:AD:DP:GQ:PL:SB 1:24,30,0:54:99:178,0,993:15,9,16,14 +chrX 2764779 . G . . END=2765040 GT:DP:GQ:MIN_DP:PL 0:53:99:53:0,898 +chrX 2765041 . C CA,CAA, 343.01 . AS_QUALapprox=|353|310|0;AS_VarDP=0|9|5|0;DP=41;QUALapprox=353;RAW_GT_COUNT=0,0,1;RAW_MQandDP=143681,41;VarDP=14 GT:AD:DP:GQ:PL:SB 1:0,9,5,0:14:43:353,0,43,240:0,0,7,7 +chrX 2765042 . A . . END=2765151 GT:DP:GQ:MIN_DP:PL 0:38:99:38:0,945 +chrX 2765152 . C G, 1269.04 . AS_QUALapprox=|1279|0;AS_VarDP=1|40|0;BaseQRankSum=-0.344;DP=44;MQRankSum=-0.113;QUALapprox=1279;RAW_GT_COUNT=0,0,1;RAW_MQandDP=156818,44;ReadPosRankSum=0.381;VarDP=41 GT:AD:DP:GQ:PL:SB 1:1,40,0:41:99:1279,0,1313:0,1,19,21 +chrX 2765153 . C . . END=2765219 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,487 +chrX 2765220 . G A, 659.04 . AS_QUALapprox=|669|0;AS_VarDP=17|33|0;BaseQRankSum=0.265;DP=51;MQRankSum=0.000;QUALapprox=669;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;ReadPosRankSum=-0.067;VarDP=50 GT:AD:DP:GQ:PL:SB 1:17,33,0:50:99:669,0,1413:9,8,22,11 +chrX 2765221 . C . . END=2765256 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,1448 +chrX 2765257 . G A, 709.04 . AS_QUALapprox=|719|0;AS_VarDP=19|35|0;BaseQRankSum=1.249;DP=54;MQRankSum=0.000;QUALapprox=719;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;ReadPosRankSum=0.530;VarDP=54 GT:AD:DP:GQ:PL:SB 1:19,35,0:54:99:719,0,1554:8,11,22,13 +chrX 2765258 . G . . END=2765282 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,1403 +chrX 2765283 . A G, 516.04 . AS_QUALapprox=|526|0;AS_VarDP=21|32|0;BaseQRankSum=-0.811;DP=53;MQRankSum=0.000;QUALapprox=526;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;ReadPosRankSum=0.873;VarDP=53 GT:AD:DP:GQ:PL:SB 1:21,32,0:53:99:526,0,1389:9,12,20,12 +chrX 2765284 . G . . END=2765375 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1220 +chrX 2765376 . GGGAAGGAA G,GGGAAGGAAGGAAGGAAGGAAGGAAGGAA, 1093.01 . AS_QUALapprox=|1103|794|0;AS_VarDP=0|29|19|0;DP=59;QUALapprox=1103;RAW_GT_COUNT=0,0,1;RAW_MQandDP=204203,59;VarDP=48 GT:AD:DP:GQ:PL:SB 1:0,29,19,0:48:99:1103,0,309,1196:0,0,23,25 +chrX 2765385 . G . . END=2765768 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1573 +chrX 2765769 . A G, 264.04 . AS_QUALapprox=|274|0;AS_VarDP=32|40|0;BaseQRankSum=-0.058;DP=75;MQRankSum=0.000;QUALapprox=274;RAW_GT_COUNT=0,0,1;RAW_MQandDP=270000,75;ReadPosRankSum=1.071;VarDP=72 GT:AD:DP:GQ:PL:SB 1:32,40,0:72:99:274,0,1295:18,14,21,19 +chrX 2765770 . T . . END=2765795 GT:DP:GQ:MIN_DP:PL 0:73:99:73:0,1800 +chrX 2765796 . C CATT, 280.01 . AS_QUALapprox=|290|0;AS_VarDP=31|37|0;BaseQRankSum=-1.662;DP=78;MQRankSum=0.000;QUALapprox=290;RAW_GT_COUNT=0,0,1;RAW_MQandDP=280800,78;ReadPosRankSum=2.113;VarDP=68 GT:AD:DP:GQ:PL:SB 1:31,37,0:68:99:290,0,1663:13,18,21,16 +chrX 2765797 . A . . END=2766175 GT:DP:GQ:MIN_DP:PL 0:74:99:74:0,1800 +chrX 2766176 . C G, 789.04 . AS_QUALapprox=|799|0;AS_VarDP=23|48|0;BaseQRankSum=-1.078;DP=74;MQRankSum=-0.662;QUALapprox=799;RAW_GT_COUNT=0,0,1;RAW_MQandDP=264529,74;ReadPosRankSum=-0.903;VarDP=71 GT:AD:DP:GQ:PL:SB 1:23,48,0:71:99:799,0,1578:12,11,24,24 +chrX 2766177 . T . . END=2766286 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1800 +chrX 2766287 . C T, 595.04 . AS_QUALapprox=|605|0;AS_VarDP=19|38|0;BaseQRankSum=-0.052;DP=61;MQRankSum=-0.982;QUALapprox=605;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216699,61;ReadPosRankSum=-0.178;VarDP=57 GT:AD:DP:GQ:PL:SB 1:19,38,0:57:99:605,0,1190:9,10,15,23 +chrX 2766288 . G . . END=2766502 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1293 +chrX 2766503 . TG T, 1073.01 . AS_QUALapprox=|1083|0;AS_VarDP=0|34|0;DP=38;QUALapprox=1083;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136225,38;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1083,0,1083:0,0,14,20 +chrX 2766505 . G . . END=2766556 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,888 +chrX 2766557 . CTTTTT C,CTTTT, 26 . AS_QUALapprox=|0|36|0;AS_VarDP=1|8|4|0;BaseQRankSum=-0.611;DP=39;MQRankSum=0.000;QUALapprox=36;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136626,39;ReadPosRankSum=0.802;VarDP=13 GT:AD:DP:GQ:PL:SB 2:1,8,4,0:13:36:36,115,0,266:1,0,6,6 +chrX 2766563 . T . . END=2766657 GT:DP:GQ:MIN_DP:PL 0:32:94:32:0,94 +chrX 2766658 . G A, 281.04 . AS_QUALapprox=|291|0;AS_VarDP=15|22|0;BaseQRankSum=2.189;DP=40;MQRankSum=0.386;QUALapprox=291;RAW_GT_COUNT=0,0,1;RAW_MQandDP=116935,40;ReadPosRankSum=-0.805;VarDP=37 GT:AD:DP:GQ:PL:SB 1:15,22,0:37:99:291,0,765:7,8,10,12 +chrX 2766659 . G . . END=2766747 GT:DP:GQ:MIN_DP:PL 0:44:99:44:0,155 +chrX 2766748 . C G, 1430.04 . AS_QUALapprox=|1440|0;AS_VarDP=0|43|0;DP=44;QUALapprox=1440;RAW_GT_COUNT=0,0,1;RAW_MQandDP=103606,44;VarDP=43 GT:AD:DP:GQ:PL:SB 1:0,43,0:43:99:1440,0,1440:0,0,22,21 +chrX 2766749 . T . . END=2766800 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,1354 +chrX 2766801 . G A, 55.04 . AS_QUALapprox=|65|0;AS_VarDP=24|25|0;BaseQRankSum=1.178;DP=52;MQRankSum=-1.949;QUALapprox=65;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147826,52;ReadPosRankSum=-0.270;VarDP=49 GT:AD:DP:GQ:PL:SB 1:24,25,0:49:65:65,0,839:11,13,14,11 +chrX 2766802 . T . . END=2767105 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1527 +chrX 2767106 . G . . END=2767106 GT:DP:GQ:MIN_DP:PL 0:55:4:55:0,4 +chrX 2767107 . T . . END=2767212 GT:DP:GQ:MIN_DP:PL 0:62:99:62:0,1755 +chrX 2767213 . T C, 2644.04 . AS_QUALapprox=|2654|0;AS_VarDP=0|60|0;DP=62;QUALapprox=2654;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:2654,0,2654:0,0,33,27 +chrX 2767214 . C . . END=2767219 GT:DP:GQ:MIN_DP:PL 0:59:99:59:0,1800 +chrX 2767220 . G A, 2621.04 . AS_QUALapprox=|2631|0;AS_VarDP=0|59|0;DP=61;QUALapprox=2631;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:2631,0,2631:0,0,31,28 +chrX 2767221 . G . . END=2767766 GT:DP:GQ:MIN_DP:PL 0:63:99:63:0,1702 +chrX 2767767 . G A, 203.04 . AS_QUALapprox=|213|0;AS_VarDP=25|31|0;BaseQRankSum=0.065;DP=57;MQRankSum=0.000;QUALapprox=213;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;ReadPosRankSum=1.146;VarDP=56 GT:AD:DP:GQ:PL:SB 1:25,31,0:56:99:213,0,1026:16,9,13,18 +chrX 2767768 . G . . END=2769280 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,351 +chrX 2769281 . T C, 239.04 . AS_QUALapprox=|249|0;AS_VarDP=26|32|0;BaseQRankSum=0.788;DP=59;MQRankSum=0.000;QUALapprox=249;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;ReadPosRankSum=0.860;VarDP=58 GT:AD:DP:GQ:PL:SB 1:26,32,0:58:99:249,0,1082:16,10,15,17 +chrX 2769282 . A . . END=2769516 GT:DP:GQ:MIN_DP:PL 0:74:99:74:0,1800 +chrX 2769517 . A G, 288.04 . AS_QUALapprox=|298|0;AS_VarDP=32|41|0;BaseQRankSum=0.621;DP=73;MQRankSum=0.000;QUALapprox=298;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;ReadPosRankSum=0.934;VarDP=73 GT:AD:DP:GQ:PL:SB 1:32,41,0:73:99:298,0,1300:17,15,21,20 +chrX 2769518 . T . . END=2769530 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1800 +chrX 2769531 . C T, 347.04 . AS_QUALapprox=|357|0;AS_VarDP=32|40|0;BaseQRankSum=2.777;DP=73;MQRankSum=0.000;QUALapprox=357;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;ReadPosRankSum=1.820;VarDP=72 GT:AD:DP:GQ:PL:SB 1:32,40,0:72:99:357,0,1349:16,16,20,20 +chrX 2769532 . T . . END=2770409 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,234 +chrX 2770410 . T C, 19.04 . AS_QUALapprox=|29|0;AS_VarDP=21|24|0;BaseQRankSum=-1.906;DP=46;MQRankSum=0.000;QUALapprox=29;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;ReadPosRankSum=1.446;VarDP=45 GT:AD:DP:GQ:PL:SB 1:21,24,0:45:29:29,0,738:8,13,9,15 +chrX 2770411 . G . . END=2771258 GT:DP:GQ:MIN_DP:PL 0:59:85:59:0,85 +chrX 2771259 . A T, 121.04 . AS_QUALapprox=|131|0;AS_VarDP=24|25|0;BaseQRankSum=1.783;DP=52;MQRankSum=0.000;QUALapprox=131;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;ReadPosRankSum=0.860;VarDP=49 GT:AD:DP:GQ:PL:SB 1:24,25,0:49:99:131,0,824:13,11,12,13 +chrX 2771260 . G . . END=2771492 GT:DP:GQ:MIN_DP:PL 0:65:99:65:0,1568 +chrX 2771493 . T A, 3.21 . AS_QUALapprox=|13|0;AS_VarDP=33|36|0;BaseQRankSum=-1.659;DP=72;MQRankSum=0.000;QUALapprox=13;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;ReadPosRankSum=-1.532;VarDP=69 GT:AD:DP:GQ:PL:SB 1:33,36,0:69:13:13,0,1121:12,21,14,22 +chrX 2771494 . C . . END=2772268 GT:DP:GQ:MIN_DP:PL 0:66:76:66:0,76 +chrX 2772269 . T C, 447.04 . AS_QUALapprox=|457|0;AS_VarDP=24|39|0;BaseQRankSum=-0.821;DP=64;MQRankSum=-1.497;QUALapprox=457;RAW_GT_COUNT=0,0,1;RAW_MQandDP=153793,64;ReadPosRankSum=0.191;VarDP=63 GT:AD:DP:GQ:PL:SB 1:24,39,0:63:99:457,0,1271:12,12,22,17 +chrX 2772270 . G . . END=2772359 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1692 +chrX 2772360 . C G, 467.04 . AS_QUALapprox=|477|0;AS_VarDP=25|39|0;BaseQRankSum=0.046;DP=69;MQRankSum=-0.468;QUALapprox=477;RAW_GT_COUNT=0,0,1;RAW_MQandDP=204518,69;ReadPosRankSum=-0.110;VarDP=64 GT:AD:DP:GQ:PL:SB 1:25,39,0:64:99:477,0,1255:12,13,21,18 +chrX 2772361 . C . . END=2773047 GT:DP:GQ:MIN_DP:PL 0:65:34:60:0,34 +chrX 2773048 . G A, 1783.04 . AS_QUALapprox=|1793|0;AS_VarDP=0|46|0;DP=46;QUALapprox=1793;RAW_GT_COUNT=0,0,1;RAW_MQandDP=150813,46;VarDP=46 GT:AD:DP:GQ:PL:SB 1:0,46,0:46:99:1793,0,1793:0,0,32,14 +chrX 2773049 . A . . END=2773520 GT:DP:GQ:MIN_DP:PL 0:46:99:46:0,239 +chrX 2773521 . A G, 298.04 . AS_QUALapprox=|308|0;AS_VarDP=0|7|0;DP=7;QUALapprox=308;RAW_GT_COUNT=0,0,1;RAW_MQandDP=20741,7;VarDP=7 GT:AD:DP:GQ:PL:SB 1:0,7,0:7:99:308,0,308:0,0,4,3 +chrX 2773522 . G . . END=2773536 GT:DP:GQ:MIN_DP:PL 0:8:99:8:0,213 +chrX 2773537 . A G, 208.04 . AS_QUALapprox=|218|0;AS_VarDP=2|7|0;BaseQRankSum=-0.812;DP=9;MQRankSum=-0.035;QUALapprox=218;RAW_GT_COUNT=0,0,1;RAW_MQandDP=26105,9;ReadPosRankSum=-0.674;VarDP=9 GT:AD:DP:GQ:PL:SB 1:2,7,0:9:99:218,0,308:1,1,4,3 +chrX 2773538 . G . . END=2773568 GT:DP:GQ:MIN_DP:PL 0:14:99:14:0,272 +chrX 2773569 . A G, 142.04 . AS_QUALapprox=|152|0;AS_VarDP=5|9|0;BaseQRankSum=-0.266;DP=14;MQRankSum=0.185;QUALapprox=152;RAW_GT_COUNT=0,0,1;RAW_MQandDP=39830,14;ReadPosRankSum=-1.590;VarDP=14 GT:AD:DP:GQ:PL:SB 1:5,9,0:14:99:152,0,377:3,2,5,4 +chrX 2773570 . G . . END=2773584 GT:DP:GQ:MIN_DP:PL 0:12:99:12:0,297 +chrX 2773585 . A G, 29.04 . AS_QUALapprox=|39|0;AS_VarDP=5|6|0;BaseQRankSum=-2.484;DP=11;MQRankSum=0.109;QUALapprox=39;RAW_GT_COUNT=0,0,1;RAW_MQandDP=30949,11;ReadPosRankSum=-1.063;VarDP=11 GT:AD:DP:GQ:PL:SB 1:5,6,0:11:39:39,0,264:3,2,4,2 +chrX 2773586 . G . . END=2773644 GT:DP:GQ:MIN_DP:PL 0:3:45:3:0,45 +chrX 2773645 . G . . END=2773684 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 2773685 . A . . END=2774017 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 2774018 . A ACC, 98.01 . AS_QUALapprox=|108|0;AS_VarDP=22|25|0;BaseQRankSum=0.430;DP=50;MQRankSum=0.000;QUALapprox=108;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;ReadPosRankSum=-0.416;VarDP=47 GT:AD:DP:GQ:PL:SB 1:22,25,0:47:99:108,0,1072:16,6,15,10 +chrX 2774019 . C . . END=2774419 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1479 +chrX 2774420 . A G, 2634.04 . AS_QUALapprox=|2644|0;AS_VarDP=0|59|0;DP=62;QUALapprox=2644;RAW_GT_COUNT=0,0,1;RAW_MQandDP=222964,62;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,59,0:59:99:2644,0,2645:0,0,35,24 +chrX 2774421 . G . . END=2774421 GT:DP:GQ:MIN_DP:PL 0:58:99:58:0,1800 +chrX 2774422 . C CCCTGTG, 2779.01 . AS_QUALapprox=|2789|0;AS_VarDP=0|63|0;DP=63;QUALapprox=2789;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226564,63;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,63,0:63:99:2789,0,2789:0,0,38,25 +chrX 2774423 . C . . END=2774555 GT:DP:GQ:MIN_DP:PL 0:61:99:61:0,1800 +chrX 2774556 . T C, 2340.04 . AS_QUALapprox=|2350|0;AS_VarDP=1|75|0;BaseQRankSum=2.072;DP=77;MQRankSum=0.000;QUALapprox=2350;RAW_GT_COUNT=0,0,1;RAW_MQandDP=277200,77;ReadPosRankSum=-0.479;VarDP=76 GT:AD:DP:GQ:PL:SB 1:1,75,0:76:99:2350,0,2359:0,1,31,44 +chrX 2774557 . C . . END=2775133 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,267 +chrX 2775134 . A C, 2061.04 . AS_QUALapprox=|2071|0;AS_VarDP=0|65|0;DP=69;QUALapprox=2071;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,65,0:65:99:2071,0,2071:0,0,36,29 +chrX 2775135 . A . . END=2775582 GT:DP:GQ:MIN_DP:PL 0:83:99:83:0,1800 +chrX 2775583 . G A, 2186.04 . AS_QUALapprox=|2196|0;AS_VarDP=1|67|0;BaseQRankSum=-0.319;DP=71;MQRankSum=0.000;QUALapprox=2196;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;ReadPosRankSum=0.204;VarDP=68 GT:AD:DP:GQ:PL:SB 1:1,67,0:68:99:2196,0,2231:0,1,28,39 +chrX 2775584 . T . . END=2776136 GT:DP:GQ:MIN_DP:PL 0:59:37:59:0,37 +chrX 2776137 . G . . END=2776137 GT:DP:GQ:MIN_DP:PL 0:64:4:64:0,4 +chrX 2776138 . C . . END=2776552 GT:DP:GQ:MIN_DP:PL 0:73:99:73:0,510 +chrX 2776553 . T G, 141.04 . AS_QUALapprox=|151|0;AS_VarDP=32|38|0;BaseQRankSum=-1.088;DP=71;MQRankSum=0.575;QUALapprox=151;RAW_GT_COUNT=0,0,1;RAW_MQandDP=150933,71;ReadPosRankSum=-1.981;VarDP=70 GT:AD:DP:GQ:PL:SB 1:32,38,0:70:99:151,0,1233:15,17,14,24 +chrX 2776554 . G . . END=2776607 GT:DP:GQ:MIN_DP:PL 0:68:99:68:0,1800 +chrX 2776608 . A G, 2191.04 . AS_QUALapprox=|2201|0;AS_VarDP=0|68|0;DP=69;QUALapprox=2201;RAW_GT_COUNT=0,0,1;RAW_MQandDP=193733,69;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,68,0:68:99:2201,0,2201:0,0,31,37 +chrX 2776609 . A . . END=2776764 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1800 +chrX 2776765 . G A, 429.04 . AS_QUALapprox=|439|0;AS_VarDP=29|39|0;BaseQRankSum=-0.582;DP=69;MQRankSum=1.189;QUALapprox=439;RAW_GT_COUNT=0,0,1;RAW_MQandDP=247401,69;ReadPosRankSum=-0.620;VarDP=68 GT:AD:DP:GQ:PL:SB 1:29,39,0:68:99:439,0,1723:14,15,19,20 +chrX 2776766 . T . . END=2776771 GT:DP:GQ:MIN_DP:PL 0:66:99:66:0,1800 +chrX 2776772 . C T, 338.04 . AS_QUALapprox=|348|0;AS_VarDP=30|38|0;BaseQRankSum=0.580;DP=69;MQRankSum=1.155;QUALapprox=348;RAW_GT_COUNT=0,0,1;RAW_MQandDP=247401,69;ReadPosRankSum=-0.335;VarDP=68 GT:AD:DP:GQ:PL:SB 1:30,38,0:68:99:348,0,1688:15,15,18,20 +chrX 2776773 . G . . END=2776844 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,262 +chrX 2776845 . TCAA T, 415.01 . AS_QUALapprox=|425|0;AS_VarDP=20|29|0;BaseQRankSum=0.364;DP=55;MQRankSum=0.000;QUALapprox=425;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;ReadPosRankSum=0.153;VarDP=49 GT:AD:DP:GQ:PL:SB 1:20,29,0:49:99:425,0,1292:8,12,18,11 +chrX 2776849 . C . . END=2777788 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,172 +chrX 2777789 . A G, 1746.04 . AS_QUALapprox=|1756|0;AS_VarDP=0|56|0;DP=58;QUALapprox=1756;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205080,58;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,56,0:56:99:1756,0,1756:0,0,30,26 +chrX 2777790 . G . . END=2777818 GT:DP:GQ:MIN_DP:PL 0:60:99:60:0,1800 +chrX 2777819 . A G, 2423.04 . AS_QUALapprox=|2433|0;AS_VarDP=0|64|0;DP=65;QUALapprox=2433;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230280,65;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,64,0:64:99:2433,0,2433:0,0,33,31 +chrX 2777820 . G . . END=2778518 GT:DP:GQ:MIN_DP:PL 0:74:99:74:0,403 +chrX 2778519 . G A, 2024.04 . AS_QUALapprox=|2034|0;AS_VarDP=0|63|0;DP=64;QUALapprox=2034;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,63,0:63:99:2034,0,2034:0,0,27,36 +chrX 2778520 . T . . END=2778774 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,1503 +chrX 2778775 . CT C, 0.02 . AS_QUALapprox=|5|0;AS_VarDP=16|16|0;BaseQRankSum=0.392;DP=48;MQRankSum=0.000;QUALapprox=5;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;ReadPosRankSum=-0.980;VarDP=32 GT:AD:DP:GQ:PL:SB 1:16,16,0:32:5:5,0,392:13,3,12,4 +chrX 2778777 . T . . END=2778850 GT:DP:GQ:MIN_DP:PL 0:45:99:45:0,347 +chrX 2778851 . G A, 29.04 . AS_QUALapprox=|39|0;AS_VarDP=25|26|0;BaseQRankSum=0.342;DP=54;MQRankSum=1.059;QUALapprox=39;RAW_GT_COUNT=0,0,1;RAW_MQandDP=191825,54;ReadPosRankSum=-2.933;VarDP=51 GT:AD:DP:GQ:PL:SB 1:25,26,0:51:39:39,0,1133:12,13,17,9 +chrX 2778852 . C T, 29.04 . AS_QUALapprox=|39|0;AS_VarDP=25|26|0;BaseQRankSum=-0.869;DP=54;MQRankSum=1.059;QUALapprox=39;RAW_GT_COUNT=0,0,1;RAW_MQandDP=191825,54;ReadPosRankSum=-2.544;VarDP=51 GT:AD:DP:GQ:PL:SB 1:25,26,0:51:39:39,0,1133:12,13,17,9 +chrX 2778853 . A . . END=2779112 GT:DP:GQ:MIN_DP:PL 0:71:99:71:0,1648 +chrX 2779113 . A C, 26.04 . AS_QUALapprox=|36|0;AS_VarDP=28|31|0;BaseQRankSum=-1.392;DP=63;MQRankSum=-0.916;QUALapprox=36;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226225,63;ReadPosRankSum=-0.152;VarDP=59 GT:AD:DP:GQ:PL:SB 1:28,31,0:59:36:36,0,987:12,16,13,18 +chrX 2779114 . A . . END=2779329 GT:DP:GQ:MIN_DP:PL 0:55:99:55:0,353 +chrX 2779330 . TAA T,TA, 537.01 . AS_QUALapprox=|297|547|0;AS_VarDP=3|12|21|0;BaseQRankSum=0.788;DP=55;MQRankSum=0.000;QUALapprox=547;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;ReadPosRankSum=-0.258;VarDP=36 GT:AD:DP:GQ:PL:SB 2:3,12,21,0:36:99:547,250,0,565:0,3,21,12 +chrX 2779333 . A . . END=2779557 GT:DP:GQ:MIN_DP:PL 0:69:99:69:0,1721 +chrX 2779558 . C A, 203.04 . AS_QUALapprox=|213|0;AS_VarDP=35|38|0;BaseQRankSum=2.796;DP=77;MQRankSum=0.000;QUALapprox=213;RAW_GT_COUNT=0,0,1;RAW_MQandDP=277200,77;ReadPosRankSum=1.050;VarDP=73 GT:AD:DP:GQ:PL:SB 1:35,38,0:73:99:213,0,1291:16,19,14,24 +chrX 2779559 . C . . END=2780287 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,128 +chrX 2780288 . AAAG A, 211.01 . AS_QUALapprox=|221|0;AS_VarDP=37|41|0;BaseQRankSum=-0.711;DP=82;MQRankSum=0.000;QUALapprox=221;RAW_GT_COUNT=0,0,1;RAW_MQandDP=295200,82;ReadPosRankSum=-0.355;VarDP=78 GT:AD:DP:GQ:PL:SB 1:37,41,0:78:99:221,0,1845:18,19,22,19 +chrX 2780292 . A . . END=2780408 GT:DP:GQ:MIN_DP:PL 0:72:99:72:0,1716 +chrX 2780409 . C CT, 0.05 . AS_QUALapprox=|6|0;AS_VarDP=20|21|0;BaseQRankSum=-0.717;DP=58;MQRankSum=0.000;QUALapprox=6;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;ReadPosRankSum=2.022;VarDP=41 GT:AD:DP:GQ:PL:SB 1:20,21,0:41:6:6,0,507:9,11,12,9 +chrX 2780410 . T . . END=2780424 GT:DP:GQ:MIN_DP:PL 0:56:99:56:0,1508 +chrX 2780425 . T TA, 86.01 . AS_QUALapprox=|96|0;AS_VarDP=22|27|0;BaseQRankSum=1.233;DP=65;MQRankSum=0.000;QUALapprox=96;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;ReadPosRankSum=-1.267;VarDP=49 GT:AD:DP:GQ:PL:SB 1:22,27,0:49:96:96,0,655:9,13,12,15 +chrX 2780426 . A . . END=2780727 GT:DP:GQ:MIN_DP:PL 0:67:99:67:0,1620 +chrX 2780728 . AAG A, 2012.01 . AS_QUALapprox=|2022|0;AS_VarDP=0|51|0;DP=54;QUALapprox=2022;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=51 GT:AD:DP:GQ:PL:SB 1:0,51,0:51:99:2022,0,2022:0,0,18,33 +chrX 2780731 . A . . END=2780912 GT:DP:GQ:MIN_DP:PL 0:57:99:57:0,480 +chrX 2780913 . G A, 1762.04 . AS_QUALapprox=|1772|0;AS_VarDP=1|55|0;BaseQRankSum=1.958;DP=59;MQRankSum=0.000;QUALapprox=1772;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;ReadPosRankSum=-1.300;VarDP=56 GT:AD:DP:GQ:PL:SB 1:1,55,0:56:99:1772,0,1797:1,0,28,27 +chrX 2780914 . G . . END=2781204 GT:DP:GQ:MIN_DP:PL 0:54:99:54:0,1204 +chrX 2781205 . C A, 1549.04 . AS_QUALapprox=|1559|0;AS_VarDP=0|47|0;DP=51;QUALapprox=1559;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=47 GT:AD:DP:GQ:PL:SB 1:0,47,0:47:99:1559,0,1559:0,0,20,27 +chrX 2781206 . G . . END=2781513 GT:DP:GQ:MIN_DP:PL 0:41:99:41:0,401 +chrX 2781514 . C A, 754.04 . AS_QUALapprox=|764|0;AS_VarDP=0|23|0;DP=24;QUALapprox=764;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:764,0,764:0,0,14,9 +chrX 2781515 . T . . END=2781603 GT:DP:GQ:MIN_DP:PL 0:22:99:22:0,571 +chrX 2781604 . G T, 677.04 . AS_QUALapprox=|687|0;AS_VarDP=0|21|0;DP=24;QUALapprox=687;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:687,0,687:0,0,12,9 +chrX 2781605 . T . . END=2782115 GT:DP:GQ:MIN_DP:PL 0:22:99:22:0,476 +chrX 2782116 . G A, 978.04 . AS_QUALapprox=|988|0;AS_VarDP=0|29|0;DP=29;QUALapprox=988;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:988,0,988:0,0,17,12 +chrX 2782117 . A . . END=2782160 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,844 +chrX 2782161 . A G, 1022.04 . AS_QUALapprox=|1032|0;AS_VarDP=0|31|0;DP=31;QUALapprox=1032;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1032,0,1032:0,0,18,13 +chrX 2782162 . T . . END=2782566 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,823 +chrX 2782567 . C T, 1105.04 . AS_QUALapprox=|1115|0;AS_VarDP=0|25|0;DP=25;QUALapprox=1115;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:1115,0,1115:0,0,10,15 +chrX 2782568 . G . . END=2782571 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,780 +chrX 2782572 . A G, 1135.04 . AS_QUALapprox=|1145|0;AS_VarDP=0|26|0;DP=26;QUALapprox=1145;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:1145,0,1145:0,0,12,14 +chrX 2782573 . G . . END=2783031 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,694 +chrX 2783032 . T C, 857.04 . AS_QUALapprox=|867|0;AS_VarDP=0|27|0;DP=27;QUALapprox=867;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:867,0,867:0,0,14,13 +chrX 2783033 . T . . END=2783143 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,750 +chrX 2783144 . C T, 819.04 . AS_QUALapprox=|829|0;AS_VarDP=0|25|0;DP=25;QUALapprox=829;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:829,0,829:0,0,14,11 +chrX 2783145 . T . . END=2785349 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,411 +chrX 2785350 . T C, 1046.04 . AS_QUALapprox=|1056|0;AS_VarDP=0|35|0;DP=36;QUALapprox=1056;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129600,36;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,35,0:35:99:1056,0,1056:0,0,14,21 +chrX 2785351 . G . . END=2785458 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,759 +chrX 2785459 . A AT, 759.01 . AS_QUALapprox=|769|0;AS_VarDP=0|25|0;DP=32;QUALapprox=769;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:769,0,769:0,0,11,14 +chrX 2785460 . A T,ATT, 1079.04 . AS_QUALapprox=|1089|232|0;AS_VarDP=0|25|0|0;DP=31;QUALapprox=1089;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0,0:25:99:1089,0,857,973:0,0,11,14 +chrX 2785461 . T . . END=2785502 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,849 +chrX 2785503 . A G, 1007.04 . AS_QUALapprox=|1017|0;AS_VarDP=0|32|0;DP=32;QUALapprox=1017;RAW_GT_COUNT=0,0,1;RAW_MQandDP=112500,32;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1017,0,1017:0,0,15,17 +chrX 2785504 . T . . END=2785591 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,853 +chrX 2785592 . A G, 1076.04 . AS_QUALapprox=|1086|0;AS_VarDP=0|36|0;DP=38;QUALapprox=1086;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;VarDP=36 GT:AD:DP:GQ:PL:SB 1:0,36,0:36:99:1086,0,1086:0,0,17,19 +chrX 2785593 . T . . END=2786259 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,270 +chrX 2786260 . C CTTTTTTTTTT, 730.01 . AS_QUALapprox=|740|0;AS_VarDP=0|17|0;DP=26;QUALapprox=740;RAW_GT_COUNT=0,0,1;RAW_MQandDP=88729,26;VarDP=17 GT:AD:DP:GQ:PL:SB 1:0,17,0:17:99:740,0,741:0,0,10,7 +chrX 2786261 . T . . END=2786293 GT:DP:GQ:MIN_DP:PL 0:14:99:14:0,174 +chrX 2786294 . G C, 338.04 . AS_QUALapprox=|348|0;AS_VarDP=0|10|0;DP=10;QUALapprox=348;RAW_GT_COUNT=0,0,1;RAW_MQandDP=36000,10;VarDP=10 GT:AD:DP:GQ:PL:SB 1:0,10,0:10:99:348,0,348:0,0,6,4 +chrX 2786295 . T . . END=2786427 GT:DP:GQ:MIN_DP:PL 0:22:99:22:0,299 +chrX 2786428 . T C, 647.04 . AS_QUALapprox=|657|0;AS_VarDP=1|23|0;BaseQRankSum=-0.681;DP=26;MQRankSum=0.000;QUALapprox=657;RAW_GT_COUNT=0,0,1;RAW_MQandDP=91600,26;ReadPosRankSum=0.579;VarDP=24 GT:AD:DP:GQ:PL:SB 1:1,23,0:24:99:657,0,692:0,1,12,11 +chrX 2786429 . G . . END=2786514 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,659 +chrX 2786515 . A G, 754.04 . AS_QUALapprox=|764|0;AS_VarDP=0|24|0;DP=25;QUALapprox=764;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:764,0,764:0,0,11,13 +chrX 2786516 . C . . END=2786567 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,679 +chrX 2786568 . T C, 872.04 . AS_QUALapprox=|882|0;AS_VarDP=0|27|0;DP=28;QUALapprox=882;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:882,0,882:0,0,14,13 +chrX 2786569 . C . . END=2786766 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,810 +chrX 2786767 . T C, 1255.04 . AS_QUALapprox=|1265|0;AS_VarDP=0|40|0;DP=41;QUALapprox=1265;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147600,41;VarDP=40 GT:AD:DP:GQ:PL:SB 1:0,40,0:40:99:1265,0,1265:0,0,25,15 +chrX 2786768 . A . . END=2786947 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,933 +chrX 2786948 . T C, 839.04 . AS_QUALapprox=|849|0;AS_VarDP=1|27|0;BaseQRankSum=1.907;DP=31;MQRankSum=0.000;QUALapprox=849;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;ReadPosRankSum=-0.743;VarDP=28 GT:AD:DP:GQ:PL:SB 1:1,27,0:28:99:849,0,873:1,0,8,19 +chrX 2786949 . G . . END=2787422 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,326 +chrX 2787423 . T A, 725.04 . AS_QUALapprox=|735|0;AS_VarDP=0|22|0;DP=23;QUALapprox=735;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:735,0,735:0,0,15,7 +chrX 2787424 . T . . END=2788854 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,506 +chrX 2788855 . T TA, 321.01 . AS_QUALapprox=|331|0;AS_VarDP=0|12|0;DP=17;QUALapprox=331;RAW_GT_COUNT=0,0,1;RAW_MQandDP=61200,17;VarDP=12 GT:AD:DP:GQ:PL:SB 1:0,12,0:12:99:331,0,331:0,0,8,4 +chrX 2788856 . A . . END=2789018 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,616 +chrX 2789019 . A G, 1209.04 . AS_QUALapprox=|1219|0;AS_VarDP=0|38|0;DP=39;QUALapprox=1219;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140400,39;VarDP=38 GT:AD:DP:GQ:PL:SB 1:0,38,0:38:99:1219,0,1219:0,0,20,18 +chrX 2789020 . C . . END=2789100 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,962 +chrX 2789101 . T C, 977.04 . AS_QUALapprox=|987|0;AS_VarDP=0|30|0;DP=31;QUALapprox=987;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:987,0,987:0,0,18,12 +chrX 2789102 . G . . END=2789936 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,740 +chrX 2789937 . T C, 1131.04 . AS_QUALapprox=|1141|0;AS_VarDP=0|36|0;DP=36;QUALapprox=1141;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129600,36;VarDP=36 GT:AD:DP:GQ:PL:SB 1:0,36,0:36:99:1141,0,1141:0,0,19,17 +chrX 2789938 . G . . END=2790504 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,595 +chrX 2790505 . G GA, 329.01 . AS_QUALapprox=|339|0;AS_VarDP=0|16|0;DP=25;QUALapprox=339;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=16 GT:AD:DP:GQ:PL:SB 1:0,16,0:16:99:339,0,340:0,0,11,5 +chrX 2790506 . A . . END=2790966 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,536 +chrX 2790967 . ATAAATT A, 1060.01 . AS_QUALapprox=|1070|0;AS_VarDP=0|24|0;DP=27;QUALapprox=1070;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:1070,0,1070:0,0,14,10 +chrX 2790974 . T . . END=2792464 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,675 +chrX 2792465 . G C, 1002.04 . AS_QUALapprox=|1012|0;AS_VarDP=1|33|0;BaseQRankSum=-0.434;DP=36;MQRankSum=0.000;QUALapprox=1012;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129600,36;ReadPosRankSum=1.275;VarDP=34 GT:AD:DP:GQ:PL:SB 1:1,33,0:34:99:1012,0,1047:0,1,13,20 +chrX 2792466 . C . . END=2792544 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,944 +chrX 2792545 . T TTGTG, 1288.01 . AS_QUALapprox=|1298|0;AS_VarDP=0|30|0;DP=39;QUALapprox=1298;RAW_GT_COUNT=0,0,1;RAW_MQandDP=139825,39;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:1298,0,1298:0,0,18,12 +chrX 2792546 . T . . END=2792798 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,684 +chrX 2792799 . C T, 734.04 . AS_QUALapprox=|744|0;AS_VarDP=0|23|0;DP=25;QUALapprox=744;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:744,0,744:0,0,12,11 +chrX 2792800 . G . . END=2792953 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,640 +chrX 2792954 . C T, 793.04 . AS_QUALapprox=|803|0;AS_VarDP=0|24|0;DP=25;QUALapprox=803;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:803,0,803:0,0,12,12 +chrX 2792955 . T . . END=2793387 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,819 +chrX 2793388 . G A, 943.04 . AS_QUALapprox=|953|0;AS_VarDP=0|28|0;DP=28;QUALapprox=953;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:953,0,953:0,0,11,17 +chrX 2793389 . T . . END=2793680 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,651 +chrX 2793681 . C T, 808.04 . AS_QUALapprox=|818|0;AS_VarDP=0|27|0;DP=27;QUALapprox=818;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:818,0,818:0,0,11,16 +chrX 2793682 . G . . END=2794241 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,467 +chrX 2794242 . C T, 1122.04 . AS_QUALapprox=|1132|0;AS_VarDP=1|36|0;BaseQRankSum=2.124;DP=38;MQRankSum=0.000;QUALapprox=1132;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;ReadPosRankSum=0.937;VarDP=37 GT:AD:DP:GQ:PL:SB 1:1,36,0:37:99:1132,0,1141:1,0,16,20 +chrX 2794243 . T . . END=2794970 GT:DP:GQ:MIN_DP:PL 0:37:99:37:0,814 +chrX 2794971 . T C, 1289.04 . AS_QUALapprox=|1299|0;AS_VarDP=0|42|0;DP=43;QUALapprox=1299;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154800,43;VarDP=42 GT:AD:DP:GQ:PL:SB 1:0,42,0:42:99:1299,0,1299:0,0,18,24 +chrX 2794972 . A . . END=2795027 GT:DP:GQ:MIN_DP:PL 0:46:99:46:0,1262 +chrX 2795028 . G A, 1745.04 . AS_QUALapprox=|1755|0;AS_VarDP=0|39|0;DP=39;QUALapprox=1755;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140400,39;VarDP=39 GT:AD:DP:GQ:PL:SB 1:0,39,0:39:99:1755,0,1755:0,0,13,26 +chrX 2795029 . C . . END=2795031 GT:DP:GQ:MIN_DP:PL 0:38:99:38:0,1281 +chrX 2795032 . C T, 1745.04 . AS_QUALapprox=|1755|0;AS_VarDP=0|39|0;DP=39;QUALapprox=1755;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140400,39;VarDP=39 GT:AD:DP:GQ:PL:SB 1:0,39,0:39:99:1755,0,1755:0,0,13,26 +chrX 2795033 . T . . END=2795047 GT:DP:GQ:MIN_DP:PL 0:37:99:37:0,1162 +chrX 2795048 . A G, 1639.04 . AS_QUALapprox=|1649|0;AS_VarDP=0|38|0;DP=38;QUALapprox=1649;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;VarDP=38 GT:AD:DP:GQ:PL:SB 1:0,38,0:38:99:1649,0,1649:0,0,13,25 +chrX 2795049 . T . . END=2795169 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,713 +chrX 2795170 . G T, 749.04 . AS_QUALapprox=|759|0;AS_VarDP=0|23|0;DP=24;QUALapprox=759;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:759,0,759:0,0,11,12 +chrX 2795171 . T . . END=2795239 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,610 +chrX 2795240 . G GTATT, 1282.01 . AS_QUALapprox=|1292|0;AS_VarDP=0|31|0;DP=33;QUALapprox=1292;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1292,0,1292:0,0,17,14 +chrX 2795241 . T . . END=2795526 GT:DP:GQ:MIN_DP:PL 0:37:99:37:0,812 +chrX 2795527 . G A, 1330.04 . AS_QUALapprox=|1340|0;AS_VarDP=0|40|0;DP=40;QUALapprox=1340;RAW_GT_COUNT=0,0,1;RAW_MQandDP=144000,40;VarDP=40 GT:AD:DP:GQ:PL:SB 1:0,40,0:40:99:1340,0,1340:0,0,21,19 +chrX 2795528 . T . . END=2795656 GT:DP:GQ:MIN_DP:PL 0:42:99:42:0,1101 +chrX 2795657 . G T, 1410.04 . AS_QUALapprox=|1420|0;AS_VarDP=0|42|0;DP=44;QUALapprox=1420;RAW_GT_COUNT=0,0,1;RAW_MQandDP=155566,44;VarDP=42 GT:AD:DP:GQ:PL:SB 1:0,42,0:42:99:1420,0,1420:0,0,18,24 +chrX 2795658 . T . . END=2795721 GT:DP:GQ:MIN_DP:PL 0:43:99:43:0,1216 +chrX 2795722 . A G, 1364.04 . AS_QUALapprox=|1374|0;AS_VarDP=0|43|0;DP=43;QUALapprox=1374;RAW_GT_COUNT=0,0,1;RAW_MQandDP=153541,43;VarDP=43 GT:AD:DP:GQ:PL:SB 1:0,43,0:43:99:1374,0,1374:0,0,20,23 +chrX 2795723 . A . . END=2795765 GT:DP:GQ:MIN_DP:PL 0:41:99:41:0,1167 +chrX 2795766 . T C, 1275.04 . AS_QUALapprox=|1285|0;AS_VarDP=0|39|0;DP=39;QUALapprox=1285;RAW_GT_COUNT=0,0,1;RAW_MQandDP=139141,39;VarDP=39 GT:AD:DP:GQ:PL:SB 1:0,39,0:39:99:1285,0,1285:0,0,21,18 +chrX 2795767 . T . . END=2796235 GT:DP:GQ:MIN_DP:PL 0:44:99:44:0,974 +chrX 2796236 . C T, 1355.04 . AS_QUALapprox=|1365|0;AS_VarDP=0|41|0;DP=41;QUALapprox=1365;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147600,41;VarDP=41 GT:AD:DP:GQ:PL:SB 1:0,41,0:41:99:1365,0,1365:0,0,16,25 +chrX 2796237 . A . . END=2796467 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,530 +chrX 2796468 . A ATGTGTG,ATGTGTGTG, 818.01 . AS_QUALapprox=|828|186|0;AS_VarDP=0|16|0|0;DP=25;QUALapprox=828;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=16 GT:AD:DP:GQ:PL:SB 1:0,16,0,0:16:99:828,0,642,735:0,0,5,11 +chrX 2796469 . T . . END=2796489 GT:DP:GQ:MIN_DP:PL 0:22:99:22:0,477 +chrX 2796490 . A G, 707.04 . AS_QUALapprox=|717|0;AS_VarDP=0|20|0;DP=22;QUALapprox=717;RAW_GT_COUNT=0,0,1;RAW_MQandDP=79200,22;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:717,0,753:0,0,5,11 +chrX 2796491 . T . . END=2797383 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,610 +chrX 2797384 . A G, 863.04 . AS_QUALapprox=|873|0;AS_VarDP=0|28|0;DP=28;QUALapprox=873;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:873,0,873:0,0,13,15 +chrX 2797385 . T . . END=2798991 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,432 +chrX 2798992 . A G, 927.04 . AS_QUALapprox=|937|0;AS_VarDP=0|30|0;DP=30;QUALapprox=937;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:937,0,937:0,0,12,18 +chrX 2798993 . G . . END=2799025 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,849 +chrX 2799026 . T C, 903.04 . AS_QUALapprox=|913|0;AS_VarDP=0|27|0;DP=27;QUALapprox=913;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:913,0,913:0,0,12,15 +chrX 2799027 . A . . END=2799192 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,710 +chrX 2799193 . C T, 977.04 . AS_QUALapprox=|987|0;AS_VarDP=0|32|0;DP=32;QUALapprox=987;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:987,0,987:0,0,14,18 +chrX 2799194 . A . . END=2799496 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,725 +chrX 2799497 . A C, 957.04 . AS_QUALapprox=|967|0;AS_VarDP=0|29|0;DP=32;QUALapprox=967;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:967,0,967:0,0,16,13 +chrX 2799498 . C . . END=2800093 GT:DP:GQ:MIN_DP:PL 0:40:99:40:0,903 +chrX 2800094 . T C, 1182.04 . AS_QUALapprox=|1192|0;AS_VarDP=0|35|0;DP=35;QUALapprox=1192;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,35,0:35:99:1192,0,1192:0,0,16,19 +chrX 2800095 . T . . END=2801200 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,405 +chrX 2801201 . CTG C, 1150.01 . AS_QUALapprox=|1160|0;AS_VarDP=0|26|0;DP=29;QUALapprox=1160;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:1160,0,1160:0,0,16,10 +chrX 2801204 . G . . END=2801256 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,710 +chrX 2801257 . A G, 759.04 . AS_QUALapprox=|769|0;AS_VarDP=1|24|0;BaseQRankSum=2.100;DP=25;MQRankSum=0.000;QUALapprox=769;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;ReadPosRankSum=1.180;VarDP=25 GT:AD:DP:GQ:PL:SB 1:1,24,0:25:99:769,0,794:1,0,14,10 +chrX 2801258 . C . . END=2801738 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,585 +chrX 2801739 . C G, 879.04 . AS_QUALapprox=|889|0;AS_VarDP=0|27|0;DP=28;QUALapprox=889;RAW_GT_COUNT=0,0,1;RAW_MQandDP=91545,28;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:889,0,889:0,0,12,15 +chrX 2801740 . G . . END=2801798 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,784 +chrX 2801799 . C T, 891.04 . AS_QUALapprox=|901|0;AS_VarDP=0|27|0;DP=28;QUALapprox=901;RAW_GT_COUNT=0,0,1;RAW_MQandDP=87170,28;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:901,0,901:0,0,12,15 +chrX 2801800 . C . . END=2801928 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,685 +chrX 2801929 . G T, 655.04 . AS_QUALapprox=|665|0;AS_VarDP=0|20|0;DP=21;QUALapprox=665;RAW_GT_COUNT=0,0,1;RAW_MQandDP=69155,21;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:665,0,665:0,0,12,8 +chrX 2801930 . A . . END=2802660 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,496 +chrX 2802661 . A G, 700.04 . AS_QUALapprox=|710|0;AS_VarDP=0|21|0;DP=22;QUALapprox=710;RAW_GT_COUNT=0,0,1;RAW_MQandDP=79200,22;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:710,0,710:0,0,8,13 +chrX 2802662 . G . . END=2803604 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,532 +chrX 2803605 . G T, 675.04 . AS_QUALapprox=|685|0;AS_VarDP=1|23|0;BaseQRankSum=-0.619;DP=24;MQRankSum=-0.302;QUALapprox=685;RAW_GT_COUNT=0,0,1;RAW_MQandDP=59951,24;ReadPosRankSum=1.012;VarDP=24 GT:AD:DP:GQ:PL:SB 1:1,23,0:24:99:685,0,719:1,0,12,11 +chrX 2803606 . T . . END=2803746 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,675 +chrX 2803747 . A G, 724.04 . AS_QUALapprox=|734|0;AS_VarDP=0|23|0;DP=24;QUALapprox=734;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:734,0,734:0,0,12,11 +chrX 2803748 . A . . END=2804014 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,655 +chrX 2804015 . A G, 988.04 . AS_QUALapprox=|998|0;AS_VarDP=0|30|0;DP=30;QUALapprox=998;RAW_GT_COUNT=0,0,1;RAW_MQandDP=106985,30;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:998,0,998:0,0,15,15 +chrX 2804016 . T . . END=2805624 GT:DP:GQ:MIN_DP:PL 0:38:99:38:0,751 +chrX 2805625 . C T, 958.04 . AS_QUALapprox=|968|0;AS_VarDP=0|30|0;DP=30;QUALapprox=968;RAW_GT_COUNT=0,0,1;RAW_MQandDP=103547,30;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:968,0,968:0,0,21,9 +chrX 2805626 . A . . END=2806718 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,522 +chrX 2806719 . T C, 1265.04 . AS_QUALapprox=|1275|0;AS_VarDP=0|39|0;DP=40;QUALapprox=1275;RAW_GT_COUNT=0,0,1;RAW_MQandDP=142609,40;VarDP=39 GT:AD:DP:GQ:PL:SB 1:0,39,0:39:99:1275,0,1275:0,0,19,20 +chrX 2806720 . C . . END=2807132 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,782 +chrX 2807133 . C CTG, 1391.01 . AS_QUALapprox=|1401|0;AS_VarDP=0|33|0;DP=34;QUALapprox=1401;RAW_GT_COUNT=0,0,1;RAW_MQandDP=114435,34;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1401,0,1401:0,0,19,14 +chrX 2807134 . T . . END=2807257 GT:DP:GQ:MIN_DP:PL 0:37:99:37:0,1018 +chrX 2807258 . A C, 1134.04 . AS_QUALapprox=|1144|0;AS_VarDP=0|37|0;DP=38;QUALapprox=1144;RAW_GT_COUNT=0,0,1;RAW_MQandDP=125136,38;VarDP=37 GT:AD:DP:GQ:PL:SB 1:0,37,0:37:99:1144,0,1144:0,0,20,17 +chrX 2807259 . T . . END=2807476 GT:DP:GQ:MIN_DP:PL 0:41:99:41:0,1066 +chrX 2807477 . T C, 1781.04 . AS_QUALapprox=|1791|0;AS_VarDP=0|42|0;DP=43;QUALapprox=1791;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140974,43;VarDP=42 GT:AD:DP:GQ:PL:SB 1:0,42,0:42:99:1791,0,1791:0,0,21,21 +chrX 2807478 . G . . END=2807501 GT:DP:GQ:MIN_DP:PL 0:41:99:41:0,1291 +chrX 2807502 . A T, 1868.04 . AS_QUALapprox=|1878|0;AS_VarDP=0|42|0;DP=42;QUALapprox=1878;RAW_GT_COUNT=0,0,1;RAW_MQandDP=137374,42;VarDP=42 GT:AD:DP:GQ:PL:SB 1:0,42,0:42:99:1878,0,1878:0,0,22,20 +chrX 2807503 . A . . END=2807503 GT:DP:GQ:MIN_DP:PL 0:41:99:41:0,1354 +chrX 2807504 . ACATGTGCACACATCGGTGTGTG A, 1868.01 . AS_QUALapprox=|1878|0;AS_VarDP=0|42|0;DP=42;QUALapprox=1878;RAW_GT_COUNT=0,0,1;RAW_MQandDP=137374,42;VarDP=42 GT:AD:DP:GQ:PL:SB 1:0,42,0:42:99:1878,0,1878:0,0,22,20 +chrX 2807527 . C . . END=2807618 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,536 +chrX 2807619 . T G, 1199.04 . AS_QUALapprox=|1209|0;AS_VarDP=0|36|0;DP=36;QUALapprox=1209;RAW_GT_COUNT=0,0,1;RAW_MQandDP=120729,36;VarDP=36 GT:AD:DP:GQ:PL:SB 1:0,36,0:36:99:1209,0,1209:0,0,20,16 +chrX 2807620 . A . . END=2807749 GT:DP:GQ:MIN_DP:PL 0:40:99:40:0,1162 +chrX 2807750 . T G, 1429.04 . AS_QUALapprox=|1439|0;AS_VarDP=0|45|0;DP=46;QUALapprox=1439;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;VarDP=45 GT:AD:DP:GQ:PL:SB 1:0,45,0:45:99:1439,0,1439:0,0,25,20 +chrX 2807751 . C . . END=2807841 GT:DP:GQ:MIN_DP:PL 0:40:99:40:0,1026 +chrX 2807842 . T C, 1111.04 . AS_QUALapprox=|1121|0;AS_VarDP=0|37|0;DP=38;QUALapprox=1121;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;VarDP=37 GT:AD:DP:GQ:PL:SB 1:0,37,0:37:99:1121,0,1121:0,0,14,23 +chrX 2807843 . G . . END=2808354 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,873 +chrX 2808355 . A G, 1013.04 . AS_QUALapprox=|1023|0;AS_VarDP=0|30|0;DP=30;QUALapprox=1023;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:1023,0,1023:0,0,15,15 +chrX 2808356 . A . . END=2808605 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,858 +chrX 2808606 . T G, 1052.04 . AS_QUALapprox=|1062|0;AS_VarDP=0|32|0;DP=32;QUALapprox=1062;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1062,0,1062:0,0,13,19 +chrX 2808607 . C . . END=2809892 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,511 +chrX 2809893 . T G, 905.04 . AS_QUALapprox=|915|0;AS_VarDP=0|28|0;DP=32;QUALapprox=915;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:915,0,915:0,0,8,20 +chrX 2809894 . G . . END=2810179 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,540 +chrX 2810180 . A C, 655.04 . AS_QUALapprox=|665|0;AS_VarDP=0|21|0;DP=22;QUALapprox=665;RAW_GT_COUNT=0,0,1;RAW_MQandDP=78379,22;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:665,0,665:0,0,12,9 +chrX 2810181 . T . . END=2810927 GT:DP:GQ:MIN_DP:PL 0:38:99:38:0,690 +chrX 2810928 . GAAAT G, 1165.01 . AS_QUALapprox=|1175|0;AS_VarDP=0|27|0;DP=34;QUALapprox=1175;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:1175,0,1175:0,0,12,15 +chrX 2810933 . A . . END=2811239 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,764 +chrX 2811240 . A G, 962.04 . AS_QUALapprox=|972|0;AS_VarDP=0|30|0;DP=30;QUALapprox=972;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:972,0,972:0,0,14,16 +chrX 2811241 . A . . END=2811498 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,788 +chrX 2811499 . T TA, 789.01 . AS_QUALapprox=|799|0;AS_VarDP=0|30|0;DP=32;QUALapprox=799;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:799,0,799:0,0,16,14 +chrX 2811500 . A . . END=2812077 GT:DP:GQ:MIN_DP:PL 0:37:99:37:0,696 +chrX 2812078 . A AG, 1823.01 . AS_QUALapprox=|1833|0;AS_VarDP=0|41|0;DP=41;QUALapprox=1833;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147600,41;VarDP=41 GT:AD:DP:GQ:PL:SB 1:0,41,0:41:99:1833,0,1833:0,0,21,20 +chrX 2812079 . C CCAAATATAGTT, 1823.01 . AS_QUALapprox=|1833|0;AS_VarDP=0|41|0;DP=41;QUALapprox=1833;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147600,41;VarDP=41 GT:AD:DP:GQ:PL:SB 1:0,41,0:41:99:1833,0,1833:0,0,21,20 +chrX 2812080 . C . . END=2812247 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,813 +chrX 2812248 . G A, 889.04 . AS_QUALapprox=|899|0;AS_VarDP=0|27|0;DP=27;QUALapprox=899;RAW_GT_COUNT=0,0,1;RAW_MQandDP=95953,27;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:899,0,899:0,0,10,17 +chrX 2812249 . G . . END=2814054 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,436 +chrX 2814055 . C T, 1439.04 . AS_QUALapprox=|1449|0;AS_VarDP=0|44|0;DP=45;QUALapprox=1449;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162000,45;VarDP=44 GT:AD:DP:GQ:PL:SB 1:0,44,0:44:99:1449,0,1449:0,0,19,25 +chrX 2814056 . T . . END=2814124 GT:DP:GQ:MIN_DP:PL 0:38:99:38:0,1066 +chrX 2814125 . A T, 1041.04 . AS_QUALapprox=|1051|0;AS_VarDP=0|34|0;DP=34;QUALapprox=1051;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1051,0,1051:0,0,19,15 +chrX 2814126 . A . . END=2814314 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,758 +chrX 2814315 . C CT, 745.01 . AS_QUALapprox=|755|0;AS_VarDP=0|27|0;DP=30;QUALapprox=755;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:755,0,755:0,0,15,12 +chrX 2814316 . T . . END=2815067 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,610 +chrX 2815068 . T G, 849.04 . AS_QUALapprox=|859|0;AS_VarDP=0|25|0;DP=25;QUALapprox=859;RAW_GT_COUNT=0,0,1;RAW_MQandDP=89209,25;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:859,0,859:0,0,16,9 +chrX 2815069 . C . . END=2815168 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,795 +chrX 2815169 . G A, 922.04 . AS_QUALapprox=|932|0;AS_VarDP=0|30|0;DP=31;QUALapprox=932;RAW_GT_COUNT=0,0,1;RAW_MQandDP=107317,31;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:932,0,932:0,0,15,15 +chrX 2815170 . C . . END=2815234 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,753 +chrX 2815235 . G A, 809.04 . AS_QUALapprox=|819|0;AS_VarDP=0|25|0;DP=28;QUALapprox=819;RAW_GT_COUNT=0,0,1;RAW_MQandDP=96517,28;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:819,0,819:0,0,17,8 +chrX 2815236 . T . . END=2815599 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,690 +chrX 2815600 . A G, 834.04 . AS_QUALapprox=|844|0;AS_VarDP=0|26|0;DP=28;QUALapprox=844;RAW_GT_COUNT=0,0,1;RAW_MQandDP=68941,28;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:844,0,844:0,0,11,15 +chrX 2815601 . A . . END=2815626 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,759 +chrX 2815627 . G A, 833.04 . AS_QUALapprox=|843|0;AS_VarDP=1|26|0;BaseQRankSum=2.502;DP=29;MQRankSum=-1.337;QUALapprox=843;RAW_GT_COUNT=0,0,1;RAW_MQandDP=68659,29;ReadPosRankSum=-0.963;VarDP=27 GT:AD:DP:GQ:PL:SB 1:1,26,0:27:99:843,0,868:1,0,13,13 +chrX 2815628 . T . . END=2815801 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,422 +chrX 2815802 . C CAT, 1477.01 . AS_QUALapprox=|1487|0;AS_VarDP=0|34|0;DP=35;QUALapprox=1487;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1487,0,1487:0,0,18,16 +chrX 2815803 . A . . END=2815820 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,973 +chrX 2815821 . A ACACACACACACC,ACACACACACACACC, 1438.01 . AS_QUALapprox=|692|1448|0;AS_VarDP=0|2|25|0;DP=35;QUALapprox=1448;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=27 GT:AD:DP:GQ:PL:SB 2:0,2,25,0:27:99:1448,756,0,1121:0,0,13,14 +chrX 2815822 . C . . END=2816679 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,651 +chrX 2816680 . ATT A, 746.01 . AS_QUALapprox=|756|0;AS_VarDP=0|21|0;DP=29;QUALapprox=756;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:756,0,756:0,0,11,10 +chrX 2816683 . T . . END=2816796 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,655 +chrX 2816797 . G A, 941.04 . AS_QUALapprox=|951|0;AS_VarDP=0|28|0;DP=30;QUALapprox=951;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:951,0,951:0,0,12,16 +chrX 2816798 . T . . END=2816888 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,764 +chrX 2816889 . G C, 1016.04 . AS_QUALapprox=|1026|0;AS_VarDP=0|24|0;DP=25;QUALapprox=1026;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:1026,0,1026:0,0,12,12 +chrX 2816890 . C . . END=2816906 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,675 +chrX 2816907 . AC A, 1045.01 . AS_QUALapprox=|1055|0;AS_VarDP=0|25|0;DP=25;QUALapprox=1055;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:1055,0,1055:0,0,11,14 +chrX 2816909 . C . . END=2817098 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,447 +chrX 2817099 . G GAGAGAC, 934.01 . AS_QUALapprox=|944|0;AS_VarDP=0|21|0;DP=23;QUALapprox=944;RAW_GT_COUNT=0,0,1;RAW_MQandDP=78002,23;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:944,0,945:0,0,15,6 +chrX 2817100 . A . . END=2817107 GT:DP:GQ:MIN_DP:PL 0:19:99:19:0,540 +chrX 2817108 . A AG, 890.01 . AS_QUALapprox=|900|0;AS_VarDP=0|20|0;DP=20;QUALapprox=900;RAW_GT_COUNT=0,0,1;RAW_MQandDP=67202,20;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:900,0,900:0,0,14,6 +chrX 2817109 . G . . END=2817110 GT:DP:GQ:MIN_DP:PL 0:18:99:18:0,555 +chrX 2817111 . A AGGGAGAGAGGG, 879.01 . AS_QUALapprox=|889|0;AS_VarDP=0|20|0;DP=20;QUALapprox=889;RAW_GT_COUNT=0,0,1;RAW_MQandDP=67202,20;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:889,0,889:0,0,15,5 +chrX 2817112 . A . . END=2817121 GT:DP:GQ:MIN_DP:PL 0:16:99:16:0,418 +chrX 2817122 . A G, 689.04 . AS_QUALapprox=|699|0;AS_VarDP=0|16|0;DP=16;QUALapprox=699;RAW_GT_COUNT=0,0,1;RAW_MQandDP=52802,16;VarDP=16 GT:AD:DP:GQ:PL:SB 1:0,16,0:16:99:699,0,699:0,0,13,3 +chrX 2817123 . A . . END=2817149 GT:DP:GQ:MIN_DP:PL 0:16:99:16:0,457 +chrX 2817150 . A AGGAG, 665.01 . AS_QUALapprox=|675|0;AS_VarDP=0|15|0;DP=19;QUALapprox=675;RAW_GT_COUNT=0,0,1;RAW_MQandDP=64498,19;VarDP=15 GT:AD:DP:GQ:PL:SB 1:0,15,0:15:99:675,0,675:0,0,12,3 +chrX 2817151 . G . . END=2817497 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,624 +chrX 2817498 . G A, 1161.04 . AS_QUALapprox=|1171|0;AS_VarDP=1|37|0;BaseQRankSum=-0.452;DP=38;MQRankSum=0.000;QUALapprox=1171;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;ReadPosRankSum=-0.912;VarDP=38 GT:AD:DP:GQ:PL:SB 1:1,37,0:38:99:1171,0,1206:0,1,21,16 +chrX 2817499 . A . . END=2817579 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,982 +chrX 2817580 . T C, 1042.04 . AS_QUALapprox=|1052|0;AS_VarDP=1|34|0;BaseQRankSum=-0.475;DP=37;MQRankSum=0.000;QUALapprox=1052;RAW_GT_COUNT=0,0,1;RAW_MQandDP=130969,37;ReadPosRankSum=1.288;VarDP=35 GT:AD:DP:GQ:PL:SB 1:1,34,0:35:99:1052,0,1087:0,1,18,16 +chrX 2817581 . T . . END=2817699 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,904 +chrX 2817700 . T A, 1102.04 . AS_QUALapprox=|1112|0;AS_VarDP=0|34|0;DP=34;QUALapprox=1112;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1112,0,1112:0,0,18,16 +chrX 2817701 . T . . END=2817780 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,899 +chrX 2817781 . C CATT, 1463.01 . AS_QUALapprox=|1473|0;AS_VarDP=0|33|0;DP=33;QUALapprox=1473;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1473,0,1473:0,0,17,16 +chrX 2817782 . A . . END=2817884 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,919 +chrX 2817885 . G A, 1405.04 . AS_QUALapprox=|1415|0;AS_VarDP=0|42|0;DP=44;QUALapprox=1415;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158400,44;VarDP=42 GT:AD:DP:GQ:PL:SB 1:0,42,0:42:99:1415,0,1415:0,0,26,16 +chrX 2817886 . T . . END=2818078 GT:DP:GQ:MIN_DP:PL 0:41:99:41:0,1090 +chrX 2818079 . TATTA T, 1514.01 . AS_QUALapprox=|1524|0;AS_VarDP=0|34|0;DP=35;QUALapprox=1524;RAW_GT_COUNT=0,0,1;RAW_MQandDP=124801,35;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1524,0,1524:0,0,15,19 +chrX 2818084 . A . . END=2818154 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,788 +chrX 2818155 . C A, 902.04 . AS_QUALapprox=|912|0;AS_VarDP=0|28|0;DP=30;QUALapprox=912;RAW_GT_COUNT=0,0,1;RAW_MQandDP=106801,30;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:912,0,912:0,0,17,11 +chrX 2818156 . C . . END=2819055 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,799 +chrX 2819056 . G A, 1092.04 . AS_QUALapprox=|1102|0;AS_VarDP=0|32|0;DP=35;QUALapprox=1102;RAW_GT_COUNT=0,0,1;RAW_MQandDP=123425,35;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1102,0,1102:0,0,14,18 +chrX 2819057 . G . . END=2819152 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,735 +chrX 2819153 . C T, 824.04 . AS_QUALapprox=|834|0;AS_VarDP=0|24|0;DP=24;QUALapprox=834;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:834,0,834:0,0,11,13 +chrX 2819154 . T . . END=2819425 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,694 +chrX 2819426 . C CA,CAA, 561.01 . AS_QUALapprox=|571|6|0;AS_VarDP=1|20|1|0;BaseQRankSum=-0.580;DP=28;MQRankSum=0.000;QUALapprox=571;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;ReadPosRankSum=-1.341;VarDP=22 GT:AD:DP:GQ:PL:SB 1:1,20,1,0:22:99:571,0,565,584:0,1,9,12 +chrX 2819427 . A . . END=2819494 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,739 +chrX 2819495 . A G, 826.04 . AS_QUALapprox=|836|0;AS_VarDP=0|25|0;DP=26;QUALapprox=836;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:836,0,836:0,0,17,8 +chrX 2819496 . G . . END=2819791 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,720 +chrX 2819792 . TC T, 1277.01 . AS_QUALapprox=|1287|0;AS_VarDP=0|32|0;DP=36;QUALapprox=1287;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129600,36;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1287,0,1287:0,0,13,19 +chrX 2819794 . A . . END=2819809 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,819 +chrX 2819810 . G T, 841.04 . AS_QUALapprox=|851|0;AS_VarDP=0|26|0;DP=28;QUALapprox=851;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:851,0,851:0,0,13,13 +chrX 2819811 . G . . END=2822281 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,630 +chrX 2822282 . G T, 1022.04 . AS_QUALapprox=|1032|0;AS_VarDP=0|32|0;DP=33;QUALapprox=1032;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1032,0,1032:0,0,18,14 +chrX 2822283 . G . . END=2822639 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,799 +chrX 2822640 . G C, 1270.04 . AS_QUALapprox=|1280|0;AS_VarDP=0|39|0;DP=39;QUALapprox=1280;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140400,39;VarDP=39 GT:AD:DP:GQ:PL:SB 1:0,39,0:39:99:1280,0,1280:0,0,20,19 +chrX 2822641 . C . . END=2822849 GT:DP:GQ:MIN_DP:PL 0:40:99:40:0,610 +chrX 2822850 . C T, 690.04 . AS_QUALapprox=|700|0;AS_VarDP=0|21|0;DP=21;QUALapprox=700;RAW_GT_COUNT=0,0,1;RAW_MQandDP=74809,21;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:700,0,700:0,0,12,9 +chrX 2822851 . G . . END=2823002 GT:DP:GQ:MIN_DP:PL 0:22:99:22:0,327 +chrX 2823003 . C A, 779.04 . AS_QUALapprox=|789|0;AS_VarDP=0|23|0;DP=24;QUALapprox=789;RAW_GT_COUNT=0,0,1;RAW_MQandDP=84400,24;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:789,0,789:0,0,8,15 +chrX 2823004 . T . . END=2824076 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,818 +chrX 2824077 . G A, 1056.04 . AS_QUALapprox=|1066|0;AS_VarDP=0|33|0;DP=33;QUALapprox=1066;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1066,0,1066:0,0,18,15 +chrX 2824078 . G . . END=2825017 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,283 +chrX 2825018 . TTCA T, 562.01 . AS_QUALapprox=|572|0;AS_VarDP=0|14|0;DP=14;QUALapprox=572;RAW_GT_COUNT=0,0,1;RAW_MQandDP=50400,14;VarDP=14 GT:AD:DP:GQ:PL:SB 1:0,14,0:14:99:572,0,572:0,0,9,5 +chrX 2825022 . T . . END=2825585 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,526 +chrX 2825586 . C A, 1170.04 . AS_QUALapprox=|1180|0;AS_VarDP=0|36|0;DP=36;QUALapprox=1180;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129600,36;VarDP=36 GT:AD:DP:GQ:PL:SB 1:0,36,0:36:99:1180,0,1180:0,0,13,23 +chrX 2825587 . C . . END=2825619 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,967 +chrX 2825620 . G A, 1012.04 . AS_QUALapprox=|1022|0;AS_VarDP=0|30|0;DP=30;QUALapprox=1022;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:1022,0,1022:0,0,13,17 +chrX 2825621 . T . . END=2825912 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,481 +chrX 2825913 . C T, 957.04 . AS_QUALapprox=|967|0;AS_VarDP=0|31|0;DP=31;QUALapprox=967;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:967,0,967:0,0,15,16 +chrX 2825914 . G . . END=2826360 GT:DP:GQ:MIN_DP:PL 0:38:99:38:0,784 +chrX 2826361 . A G, 1265.04 . AS_QUALapprox=|1275|0;AS_VarDP=0|39|0;DP=39;QUALapprox=1275;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140400,39;VarDP=39 GT:AD:DP:GQ:PL:SB 1:0,39,0:39:99:1275,0,1275:0,0,23,16 +chrX 2826362 . T . . END=2826723 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,829 +chrX 2826724 . C T, 824.04 . AS_QUALapprox=|834|0;AS_VarDP=0|26|0;DP=28;QUALapprox=834;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:834,0,834:0,0,14,12 +chrX 2826725 . G . . END=2827052 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,749 +chrX 2827053 . CACTCATACATGCATGCACTCACACCATCATCACTCATTCA C, 906.01 . AS_QUALapprox=|916|0;AS_VarDP=0|21|0;DP=30;QUALapprox=916;RAW_GT_COUNT=0,0,1;RAW_MQandDP=102050,30;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:916,0,916:0,0,13,8 +chrX 2827094 . A . . END=2828516 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,616 +chrX 2828517 . T C, 1393.04 . AS_QUALapprox=|1403|0;AS_VarDP=0|44|0;DP=44;QUALapprox=1403;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158400,44;VarDP=44 GT:AD:DP:GQ:PL:SB 1:0,44,0:44:99:1403,0,1403:0,0,19,25 +chrX 2828518 . A . . END=2828820 GT:DP:GQ:MIN_DP:PL 0:40:99:40:0,948 +chrX 2828821 . G A, 1283.04 . AS_QUALapprox=|1293|0;AS_VarDP=0|43|0;DP=48;QUALapprox=1293;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=43 GT:AD:DP:GQ:PL:SB 1:0,43,0:43:99:1293,0,1293:0,0,18,25 +chrX 2828822 . C . . END=2828878 GT:DP:GQ:MIN_DP:PL 0:38:99:38:0,1140 +chrX 2828879 . T TG, 1272.01 . AS_QUALapprox=|1282|0;AS_VarDP=0|36|0;DP=38;QUALapprox=1282;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;VarDP=36 GT:AD:DP:GQ:PL:SB 1:0,36,0:36:99:1282,0,1282:0,0,13,23 +chrX 2828880 . G . . END=2829472 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,223 +chrX 2829473 . C T, 489.04 . AS_QUALapprox=|499|0;AS_VarDP=0|17|0;DP=18;QUALapprox=499;RAW_GT_COUNT=0,0,1;RAW_MQandDP=64800,18;VarDP=17 GT:AD:DP:GQ:PL:SB 1:0,17,0:17:99:499,0,499:0,0,12,5 +chrX 2829474 . T . . END=2830009 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,129 +chrX 2830010 . T C, 1310.04 . AS_QUALapprox=|1320|0;AS_VarDP=0|41|0;DP=42;QUALapprox=1320;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151200,42;VarDP=41 GT:AD:DP:GQ:PL:SB 1:0,41,0:41:99:1320,0,1320:0,0,18,23 +chrX 2830011 . G . . END=2830211 GT:DP:GQ:MIN_DP:PL 0:43:99:43:0,1141 +chrX 2830212 . G C, 1261.04 . AS_QUALapprox=|1271|0;AS_VarDP=1|38|0;BaseQRankSum=2.987;DP=41;MQRankSum=-0.116;QUALapprox=1271;RAW_GT_COUNT=0,0,1;RAW_MQandDP=145997,41;ReadPosRankSum=-0.489;VarDP=39 GT:AD:DP:GQ:PL:SB 1:1,38,0:39:99:1271,0,1281:0,1,21,17 +chrX 2830213 . C . . END=2830250 GT:DP:GQ:MIN_DP:PL 0:38:99:38:0,988 +chrX 2830251 . C G, 1022.04 . AS_QUALapprox=|1032|0;AS_VarDP=0|31|0;DP=34;QUALapprox=1032;RAW_GT_COUNT=0,0,1;RAW_MQandDP=120797,34;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1032,0,1032:0,0,14,17 +chrX 2830252 . A . . END=2830379 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,814 +chrX 2830380 . G A, 1008.04 . AS_QUALapprox=|1018|0;AS_VarDP=1|30|0;BaseQRankSum=5.660;DP=34;MQRankSum=0.000;QUALapprox=1018;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;ReadPosRankSum=-0.783;VarDP=31 GT:AD:DP:GQ:PL:SB 1:1,30,0:31:99:1018,0,1042:1,0,8,22 +chrX 2830381 . G . . END=2831479 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,624 +chrX 2831480 . T C, 1010.04 . AS_QUALapprox=|1020|0;AS_VarDP=0|34|0;DP=37;QUALapprox=1020;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133200,37;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1020,0,1020:0,0,17,17 +chrX 2831481 . G . . END=2832080 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,506 +chrX 2832081 . C T, 854.04 . AS_QUALapprox=|864|0;AS_VarDP=0|26|0;DP=26;QUALapprox=864;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:864,0,864:0,0,14,12 +chrX 2832082 . C . . END=2832412 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,858 +chrX 2832413 . C CT, 1402.01 . AS_QUALapprox=|1412|0;AS_VarDP=0|38|0;DP=38;QUALapprox=1412;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136564,38;VarDP=38 GT:AD:DP:GQ:PL:SB 1:0,38,0:38:99:1412,0,1412:0,0,21,17 +chrX 2832414 . T . . END=2833118 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,645 +chrX 2833119 . T C, 1167.04 . AS_QUALapprox=|1177|0;AS_VarDP=0|35|0;DP=35;QUALapprox=1177;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,35,0:35:99:1177,0,1177:0,0,23,12 +chrX 2833120 . T . . END=2833658 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,749 +chrX 2833659 . T C, 770.04 . AS_QUALapprox=|780|0;AS_VarDP=0|23|0;DP=25;QUALapprox=780;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:780,0,780:0,0,9,14 +chrX 2833660 . T . . END=2833862 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,834 +chrX 2833863 . C G, 793.04 . AS_QUALapprox=|803|0;AS_VarDP=0|25|0;DP=25;QUALapprox=803;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:803,0,803:0,0,12,13 +chrX 2833864 . T . . END=2836851 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,461 +chrX 2836852 . T A, 898.04 . AS_QUALapprox=|908|0;AS_VarDP=0|27|0;DP=29;QUALapprox=908;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:908,0,908:0,0,13,14 +chrX 2836853 . G . . END=2837883 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,546 +chrX 2837884 . C T, 649.04 . AS_QUALapprox=|659|0;AS_VarDP=0|22|0;DP=23;QUALapprox=659;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:659,0,659:0,0,15,7 +chrX 2837885 . G . . END=2838451 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,301 +chrX 2838452 . C CCCCTCCCTTCCTCCTT, 799.01 . AS_QUALapprox=|809|0;AS_VarDP=0|18|0;DP=21;QUALapprox=809;RAW_GT_COUNT=0,0,1;RAW_MQandDP=74450,21;VarDP=18 GT:AD:DP:GQ:PL:SB 1:0,18,0:18:99:809,0,810:0,0,5,13 +chrX 2838453 . C . . END=2839706 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,491 +chrX 2839707 . G A, 734.04 . AS_QUALapprox=|744|0;AS_VarDP=0|22|0;DP=25;QUALapprox=744;RAW_GT_COUNT=0,0,1;RAW_MQandDP=89001,25;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:744,0,744:0,0,10,12 +chrX 2839708 . C . . END=2839741 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,700 +chrX 2839742 . G A, 748.04 . AS_QUALapprox=|758|0;AS_VarDP=0|23|0;DP=23;QUALapprox=758;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:758,0,758:0,0,11,12 +chrX 2839743 . A . . END=2841003 GT:DP:GQ:MIN_DP:PL 0:38:99:38:0,536 +chrX 2841004 . TATAG T, 1055.01 . AS_QUALapprox=|1065|0;AS_VarDP=0|24|0;DP=32;QUALapprox=1065;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:1065,0,1065:0,0,11,13 +chrX 2841009 . A . . END=2841363 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,590 +chrX 2841364 . TGATA T, 961.01 . AS_QUALapprox=|971|0;AS_VarDP=0|22|0;DP=25;QUALapprox=971;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:971,0,971:0,0,11,11 +chrX 2841369 . G . . END=2842184 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,685 +chrX 2842185 . C CTTTCTTT, 998.01 . AS_QUALapprox=|1008|0;AS_VarDP=0|23|0;DP=31;QUALapprox=1008;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:1008,0,1009:0,0,15,8 +chrX 2842186 . T . . END=2842742 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,392 +chrX 2842743 . GTGTTT G, 1510.01 . AS_QUALapprox=|1520|0;AS_VarDP=0|34|0;DP=39;QUALapprox=1520;RAW_GT_COUNT=0,0,1;RAW_MQandDP=139104,39;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1520,0,1520:0,0,10,24 +chrX 2842749 . T . . END=2842815 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,810 +chrX 2842816 . A AT, 332.01 . AS_QUALapprox=|342|0;AS_VarDP=1|16|0;BaseQRankSum=-0.412;DP=27;MQRankSum=-0.307;QUALapprox=342;RAW_GT_COUNT=0,0,1;RAW_MQandDP=91936,27;ReadPosRankSum=0.307;VarDP=17 GT:AD:DP:GQ:PL:SB 1:1,16,0:17:99:342,0,367:0,1,8,8 +chrX 2842817 . T . . END=2844525 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,331 +chrX 2844526 . A G, 615.04 . AS_QUALapprox=|625|0;AS_VarDP=0|20|0;DP=21;QUALapprox=625;RAW_GT_COUNT=0,0,1;RAW_MQandDP=69204,21;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:625,0,625:0,0,11,9 +chrX 2844527 . T . . END=2844754 GT:DP:GQ:MIN_DP:PL 0:18:99:18:0,135 +chrX 2844755 . C . . END=2844755 GT:DP:GQ:MIN_DP:PL 0:29:0:29:0,0 +chrX 2844756 . A . . END=2844782 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,774 +chrX 2844783 . C . . END=2844785 GT:DP:GQ:MIN_DP:PL 0:30:0:30:0,0 +chrX 2844786 . A . . END=2845058 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,585 +chrX 2845059 . G A, 679.04 . AS_QUALapprox=|689|0;AS_VarDP=0|16|0;DP=16;QUALapprox=689;RAW_GT_COUNT=0,0,1;RAW_MQandDP=51601,16;VarDP=16 GT:AD:DP:GQ:PL:SB 1:0,16,0:16:99:689,0,689:0,0,7,9 +chrX 2845060 . T . . END=2845082 GT:DP:GQ:MIN_DP:PL 0:14:99:14:0,338 +chrX 2845083 . G A, 660.04 . AS_QUALapprox=|670|0;AS_VarDP=0|18|0;DP=18;QUALapprox=670;RAW_GT_COUNT=0,0,1;RAW_MQandDP=58801,18;VarDP=18 GT:AD:DP:GQ:PL:SB 1:0,18,0:18:99:670,0,670:0,0,8,10 +chrX 2845084 . T . . END=2845106 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,530 +chrX 2845107 . G . . END=2845107 GT:DP:GQ:MIN_DP:PL 0:19:0:19:0,0 +chrX 2845108 . T . . END=2845130 GT:DP:GQ:MIN_DP:PL 0:17:99:17:0,270 +chrX 2845131 . G . . END=2845131 GT:DP:GQ:MIN_DP:PL 0:15:0:15:0,0 +chrX 2845132 . T . . END=2845152 GT:DP:GQ:MIN_DP:PL 0:7:45:7:0,45 +chrX 2845153 . A . . END=2845442 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 2845443 . G . . END=2845465 GT:DP:GQ:MIN_DP:PL 0:2:20:1:0,20 +chrX 2845466 . C . . END=2845466 GT:DP:GQ:MIN_DP:PL 0:3:0:3:0,0 +chrX 2845467 . G . . END=2845514 GT:DP:GQ:MIN_DP:PL 0:5:35:3:0,35 +chrX 2845515 . G . . END=2845515 GT:DP:GQ:MIN_DP:PL 0:9:0:9:0,0 +chrX 2845516 . T . . END=2845519 GT:DP:GQ:MIN_DP:PL 0:11:90:11:0,90 +chrX 2845520 . T . . END=2845521 GT:DP:GQ:MIN_DP:PL 0:11:0:11:0,0 +chrX 2845522 . T . . END=2845549 GT:DP:GQ:MIN_DP:PL 0:14:45:14:0,45 +chrX 2845550 . T . . END=2845553 GT:DP:GQ:MIN_DP:PL 0:17:0:17:0,0 +chrX 2845554 . T . . END=2845566 GT:DP:GQ:MIN_DP:PL 0:17:99:17:0,397 +chrX 2845567 . G . . END=2845567 GT:DP:GQ:MIN_DP:PL 0:20:0:20:0,0 +chrX 2845568 . T . . END=2845642 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,556 +chrX 2845643 . A . . END=2845643 GT:DP:GQ:MIN_DP:PL 0:29:0:29:0,0 +chrX 2845644 . C . . END=2846035 GT:DP:GQ:MIN_DP:PL 0:18:99:18:0,302 +chrX 2846036 . C CATATATATAT, 394.01 . AS_QUALapprox=|404|0;AS_VarDP=0|9|0;DP=12;QUALapprox=404;RAW_GT_COUNT=0,0,1;RAW_MQandDP=43200,12;VarDP=9 GT:AD:DP:GQ:PL:SB 1:0,9,0:9:99:404,0,405:0,0,4,5 +chrX 2846037 . A . . END=2847532 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,225 +chrX 2847533 . CA C, 166.01 . AS_QUALapprox=|176|0;AS_VarDP=1|9|0;BaseQRankSum=0.000;DP=18;MQRankSum=0.000;QUALapprox=176;RAW_GT_COUNT=0,0,1;RAW_MQandDP=64800,18;ReadPosRankSum=0.674;VarDP=10 GT:AD:DP:GQ:PL:SB 1:1,9,0:10:99:176,0,183:0,1,8,1 +chrX 2847535 . A . . END=2847702 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,522 +chrX 2847703 . A AAAAT, 614.01 . AS_QUALapprox=|624|0;AS_VarDP=0|14|0;DP=30;QUALapprox=624;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=14 GT:AD:DP:GQ:PL:SB 1:0,14,0:14:99:624,0,625:0,0,6,8 +chrX 2847704 . A . . END=2848311 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,878 +chrX 2848312 . A G, 1305.04 . AS_QUALapprox=|1315|0;AS_VarDP=0|41|0;DP=43;QUALapprox=1315;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154800,43;VarDP=41 GT:AD:DP:GQ:PL:SB 1:0,41,0:41:99:1315,0,1315:0,0,22,19 +chrX 2848313 . C . . END=2848546 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,785 +chrX 2848547 . GA G, 795.01 . AS_QUALapprox=|805|0;AS_VarDP=0|29|0;DP=34;QUALapprox=805;RAW_GT_COUNT=0,0,1;RAW_MQandDP=119425,34;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:805,0,805:0,0,13,16 +chrX 2848549 . A . . END=2850569 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,501 +chrX 2850570 . C G, 1063.04 . AS_QUALapprox=|1073|0;AS_VarDP=0|25|0;DP=26;QUALapprox=1073;RAW_GT_COUNT=0,0,1;RAW_MQandDP=79243,26;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:1073,0,1073:0,0,13,12 +chrX 2850571 . C . . END=2850594 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,774 +chrX 2850595 . G A, 1063.04 . AS_QUALapprox=|1073|0;AS_VarDP=0|25|0;DP=25;QUALapprox=1073;RAW_GT_COUNT=0,0,1;RAW_MQandDP=71892,25;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:1073,0,1073:0,0,12,13 +chrX 2850596 . G . . END=2850671 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,715 +chrX 2850672 . T C, 912.04 . AS_QUALapprox=|922|0;AS_VarDP=0|28|0;DP=29;QUALapprox=922;RAW_GT_COUNT=0,0,1;RAW_MQandDP=84996,29;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:922,0,922:0,0,12,16 +chrX 2850673 . C . . END=2850867 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,619 +chrX 2850868 . T C, 892.04 . AS_QUALapprox=|902|0;AS_VarDP=0|28|0;DP=28;QUALapprox=902;RAW_GT_COUNT=0,0,1;RAW_MQandDP=92566,28;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:902,0,902:0,0,11,17 +chrX 2850869 . A . . END=2851061 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,546 +chrX 2851062 . A T, 501.04 . AS_QUALapprox=|511|0;AS_VarDP=0|15|0;DP=15;QUALapprox=511;RAW_GT_COUNT=0,0,1;RAW_MQandDP=54000,15;VarDP=15 GT:AD:DP:GQ:PL:SB 1:0,15,0:15:99:511,0,511:0,0,10,5 +chrX 2851063 . A . . END=2851292 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,528 +chrX 2851293 . C T, 1013.04 . AS_QUALapprox=|1023|0;AS_VarDP=0|30|0;DP=31;QUALapprox=1023;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111136,31;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:1023,0,1023:0,0,14,16 +chrX 2851294 . G . . END=2853272 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,501 +chrX 2853273 . C T, 1134.04 . AS_QUALapprox=|1144|0;AS_VarDP=0|36|0;DP=36;QUALapprox=1144;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129600,36;VarDP=36 GT:AD:DP:GQ:PL:SB 1:0,36,0:36:99:1144,0,1144:0,0,22,14 +chrX 2853274 . G . . END=2854356 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,727 +chrX 2854357 . T G, 942.04 . AS_QUALapprox=|952|0;AS_VarDP=0|31|0;DP=32;QUALapprox=952;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:952,0,952:0,0,16,15 +chrX 2854358 . A . . END=2854730 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,745 +chrX 2854731 . T C, 1248.04 . AS_QUALapprox=|1258|0;AS_VarDP=0|30|0;DP=30;QUALapprox=1258;RAW_GT_COUNT=0,0,1;RAW_MQandDP=106081,30;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:1258,0,1258:0,0,14,16 +chrX 2854732 . G . . END=2854750 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,883 +chrX 2854751 . C T, 1234.04 . AS_QUALapprox=|1244|0;AS_VarDP=0|29|0;DP=29;QUALapprox=1244;RAW_GT_COUNT=0,0,1;RAW_MQandDP=102481,29;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:1244,0,1244:0,0,14,15 +chrX 2854752 . G . . END=2855901 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,700 +chrX 2855902 . T G, 1250.04 . AS_QUALapprox=|1260|0;AS_VarDP=0|40|0;DP=42;QUALapprox=1260;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151200,42;VarDP=40 GT:AD:DP:GQ:PL:SB 1:0,40,0:40:99:1260,0,1260:0,0,20,20 +chrX 2855903 . T . . END=2856004 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,1006 +chrX 2856005 . A G, 1116.04 . AS_QUALapprox=|1126|0;AS_VarDP=0|36|0;DP=36;QUALapprox=1126;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129600,36;VarDP=36 GT:AD:DP:GQ:PL:SB 1:0,36,0:36:99:1126,0,1126:0,0,17,19 +chrX 2856006 . T . . END=2856436 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,571 +chrX 2856437 . A G, 1203.04 . AS_QUALapprox=|1213|0;AS_VarDP=0|42|0;DP=43;QUALapprox=1213;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154800,43;VarDP=42 GT:AD:DP:GQ:PL:SB 1:0,42,0:42:99:1213,0,1213:0,0,25,17 +chrX 2856438 . T . . END=2856747 GT:DP:GQ:MIN_DP:PL 0:38:99:38:0,870 +chrX 2856748 . CTATG C, 1211.01 . AS_QUALapprox=|1221|0;AS_VarDP=1|30|0;BaseQRankSum=-0.288;DP=33;MQRankSum=-0.131;QUALapprox=1221;RAW_GT_COUNT=0,0,1;RAW_MQandDP=117434,33;ReadPosRankSum=0.000;VarDP=31 GT:AD:DP:GQ:PL:SB 1:1,30,0:31:99:1221,0,1237:1,0,16,14 +chrX 2856753 . T . . END=2856798 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,829 +chrX 2856799 . C CATCT, 1216.01 . AS_QUALapprox=|1226|0;AS_VarDP=0|28|0;DP=32;QUALapprox=1226;RAW_GT_COUNT=0,0,1;RAW_MQandDP=113834,32;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:1226,0,1227:0,0,15,13 +chrX 2856800 . A . . END=2856962 GT:DP:GQ:MIN_DP:PL 0:37:99:37:0,684 +chrX 2856963 . TTATCTATC T, 1123.01 . AS_QUALapprox=|1133|0;AS_VarDP=0|26|0;DP=33;QUALapprox=1133;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:1133,0,1133:0,0,11,15 +chrX 2856972 . T . . END=2857405 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,770 +chrX 2857406 . A ATATC, 1250.01 . AS_QUALapprox=|1260|0;AS_VarDP=0|28|0;DP=29;QUALapprox=1260;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:1260,0,1260:0,0,17,11 +chrX 2857407 . T . . END=2857649 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,768 +chrX 2857650 . G C, 1092.04 . AS_QUALapprox=|1102|0;AS_VarDP=0|34|0;DP=37;QUALapprox=1102;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133200,37;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1102,0,1102:0,0,16,18 +chrX 2857651 . T . . END=2857834 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,939 +chrX 2857835 . A G, 909.04 . AS_QUALapprox=|919|0;AS_VarDP=0|27|0;DP=29;QUALapprox=919;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:919,0,919:0,0,15,12 +chrX 2857836 . C . . END=2858085 GT:DP:GQ:MIN_DP:PL 0:39:99:39:0,909 +chrX 2858086 . A AT, 1007.01 . AS_QUALapprox=|1017|0;AS_VarDP=0|35|0;DP=40;QUALapprox=1017;RAW_GT_COUNT=0,0,1;RAW_MQandDP=144000,40;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,35,0:35:99:1017,0,1017:0,0,19,16 +chrX 2858087 . T . . END=2858111 GT:DP:GQ:MIN_DP:PL 0:37:99:37:0,1187 +chrX 2858112 . T C, 1145.04 . AS_QUALapprox=|1155|0;AS_VarDP=0|36|0;DP=37;QUALapprox=1155;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133200,37;VarDP=36 GT:AD:DP:GQ:PL:SB 1:0,36,0:36:99:1155,0,1155:0,0,20,16 +chrX 2858113 . G . . END=2858276 GT:DP:GQ:MIN_DP:PL 0:45:99:45:0,1137 +chrX 2858277 . AT A, 1730.01 . AS_QUALapprox=|1740|0;AS_VarDP=1|44|0;BaseQRankSum=-0.444;DP=45;MQRankSum=0.000;QUALapprox=1740;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162000,45;ReadPosRankSum=0.886;VarDP=45 GT:AD:DP:GQ:PL:SB 1:1,44,0:45:99:1740,0,1781:0,1,18,26 +chrX 2858279 . G . . END=2858644 GT:DP:GQ:MIN_DP:PL 0:38:99:38:0,977 +chrX 2858645 . G T, 978.04 . AS_QUALapprox=|988|0;AS_VarDP=0|30|0;DP=32;QUALapprox=988;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:988,0,988:0,0,15,15 +chrX 2858646 . A . . END=2859065 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,725 +chrX 2859066 . T G, 953.04 . AS_QUALapprox=|963|0;AS_VarDP=0|28|0;DP=28;QUALapprox=963;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:963,0,963:0,0,9,19 +chrX 2859067 . A . . END=2859272 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,759 +chrX 2859273 . A G, 1339.04 . AS_QUALapprox=|1349|0;AS_VarDP=0|32|0;DP=34;QUALapprox=1349;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1349,0,1349:0,0,15,17 +chrX 2859274 . T . . END=2859278 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,1018 +chrX 2859279 . ATAG A, 1378.01 . AS_QUALapprox=|1388|0;AS_VarDP=0|33|0;DP=33;QUALapprox=1388;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1388,0,1388:0,0,16,17 +chrX 2859283 . T . . END=2859313 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,825 +chrX 2859314 . C T, 874.04 . AS_QUALapprox=|884|0;AS_VarDP=0|26|0;DP=27;QUALapprox=884;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:884,0,884:0,0,14,12 +chrX 2859315 . A . . END=2859518 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,764 +chrX 2859519 . A G, 828.04 . AS_QUALapprox=|838|0;AS_VarDP=0|26|0;DP=28;QUALapprox=838;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:838,0,838:0,0,11,15 +chrX 2859520 . T . . END=2859943 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,734 +chrX 2859944 . C T, 1002.04 . AS_QUALapprox=|1012|0;AS_VarDP=0|31|0;DP=32;QUALapprox=1012;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1012,0,1012:0,0,13,18 +chrX 2859945 . G . . END=2860280 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,630 +chrX 2860281 . G A, 978.04 . AS_QUALapprox=|988|0;AS_VarDP=0|29|0;DP=31;QUALapprox=988;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:988,0,988:0,0,15,14 +chrX 2860282 . T . . END=2860391 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,884 +chrX 2860392 . C G, 953.04 . AS_QUALapprox=|963|0;AS_VarDP=0|28|0;DP=32;QUALapprox=963;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:963,0,963:0,0,15,13 +chrX 2860393 . T . . END=2860484 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,809 +chrX 2860485 . A G, 1410.04 . AS_QUALapprox=|1420|0;AS_VarDP=0|32|0;DP=32;QUALapprox=1420;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1420,0,1420:0,0,14,18 +chrX 2860486 . G . . END=2860504 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,988 +chrX 2860505 . C A, 1504.04 . AS_QUALapprox=|1514|0;AS_VarDP=0|35|0;DP=35;QUALapprox=1514;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,35,0:35:99:1514,0,1514:0,0,16,19 +chrX 2860506 . G . . END=2860545 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,809 +chrX 2860546 . A G, 863.04 . AS_QUALapprox=|873|0;AS_VarDP=0|26|0;DP=28;QUALapprox=873;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:873,0,873:0,0,13,13 +chrX 2860547 . G . . END=2860642 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,554 +chrX 2860643 . CTT C, 418.01 . AS_QUALapprox=|428|0;AS_VarDP=0|14|0;DP=23;QUALapprox=428;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;VarDP=14 GT:AD:DP:GQ:PL:SB 1:0,14,0:14:99:428,0,428:0,0,3,11 +chrX 2860646 . T . . END=2860754 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,700 +chrX 2860755 . A T, 894.04 . AS_QUALapprox=|904|0;AS_VarDP=0|26|0;DP=27;QUALapprox=904;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:904,0,904:0,0,18,8 +chrX 2860756 . G . . END=2860790 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,743 +chrX 2860791 . A G, 867.04 . AS_QUALapprox=|877|0;AS_VarDP=0|28|0;DP=29;QUALapprox=877;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:877,0,877:0,0,18,10 +chrX 2860792 . T . . END=2860940 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,727 +chrX 2860941 . G T, 1246.04 . AS_QUALapprox=|1256|0;AS_VarDP=0|29|0;DP=29;QUALapprox=1256;RAW_GT_COUNT=0,0,1;RAW_MQandDP=103825,29;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:1256,0,1256:0,0,14,15 +chrX 2860942 . C . . END=2860954 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,872 +chrX 2860955 . T C, 1211.04 . AS_QUALapprox=|1221|0;AS_VarDP=0|28|0;DP=29;QUALapprox=1221;RAW_GT_COUNT=0,0,1;RAW_MQandDP=103825,29;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:1221,0,1221:0,0,13,15 +chrX 2860956 . C . . END=2861129 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,710 +chrX 2861130 . G A, 1187.04 . AS_QUALapprox=|1197|0;AS_VarDP=0|35|0;DP=36;QUALapprox=1197;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129600,36;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,35,0:35:99:1197,0,1197:0,0,18,17 +chrX 2861131 . T . . END=2861169 GT:DP:GQ:MIN_DP:PL 0:37:99:37:0,1136 +chrX 2861170 . G A, 1231.04 . AS_QUALapprox=|1241|0;AS_VarDP=0|37|0;DP=38;QUALapprox=1241;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;VarDP=37 GT:AD:DP:GQ:PL:SB 1:0,37,0:37:99:1241,0,1241:0,0,21,16 +chrX 2861171 . G . . END=2861288 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,874 +chrX 2861289 . T C, 863.04 . AS_QUALapprox=|873|0;AS_VarDP=0|27|0;DP=29;QUALapprox=873;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:873,0,873:0,0,11,16 +chrX 2861290 . T . . END=2861528 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,814 +chrX 2861529 . A G, 863.04 . AS_QUALapprox=|873|0;AS_VarDP=0|27|0;DP=27;QUALapprox=873;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:873,0,873:0,0,14,13 +chrX 2861530 . C . . END=2862077 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,606 +chrX 2862078 . T TGGAA, 1642.01 . AS_QUALapprox=|1652|0;AS_VarDP=0|37|0;DP=40;QUALapprox=1652;RAW_GT_COUNT=0,0,1;RAW_MQandDP=144000,40;VarDP=37 GT:AD:DP:GQ:PL:SB 1:0,37,0:37:99:1652,0,1652:0,0,20,17 +chrX 2862079 . G . . END=2862223 GT:DP:GQ:MIN_DP:PL 0:37:99:37:0,1046 +chrX 2862224 . G A, 1080.04 . AS_QUALapprox=|1090|0;AS_VarDP=0|32|0;DP=32;QUALapprox=1090;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1090,0,1090:0,0,12,20 +chrX 2862225 . G . . END=2862277 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,874 +chrX 2862278 . A C, 918.04 . AS_QUALapprox=|928|0;AS_VarDP=0|28|0;DP=28;QUALapprox=928;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:928,0,928:0,0,13,15 +chrX 2862279 . C . . END=2862491 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,714 +chrX 2862492 . C T, 1085.04 . AS_QUALapprox=|1095|0;AS_VarDP=0|33|0;DP=33;QUALapprox=1095;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1095,0,1095:0,0,18,15 +chrX 2862493 . T . . END=2862705 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,685 +chrX 2862706 . C T, 813.04 . AS_QUALapprox=|823|0;AS_VarDP=0|24|0;DP=25;QUALapprox=823;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:823,0,823:0,0,9,15 +chrX 2862707 . G . . END=2862784 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,735 +chrX 2862785 . C T, 980.04 . AS_QUALapprox=|990|0;AS_VarDP=1|23|0;BaseQRankSum=-0.151;DP=25;MQRankSum=0.000;QUALapprox=990;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;ReadPosRankSum=1.157;VarDP=24 GT:AD:DP:GQ:PL:SB 1:1,23,0:24:99:990,0,1035:1,0,13,10 +chrX 2862786 . G . . END=2862787 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,794 +chrX 2862788 . T A, 1039.04 . AS_QUALapprox=|1049|0;AS_VarDP=1|25|0;BaseQRankSum=-0.390;DP=26;MQRankSum=0.000;QUALapprox=1049;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;ReadPosRankSum=0.668;VarDP=26 GT:AD:DP:GQ:PL:SB 1:1,25,0:26:99:1049,0,1094:1,0,13,12 +chrX 2862789 . G . . END=2863079 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,606 +chrX 2863080 . CT C, 488.01 . AS_QUALapprox=|498|0;AS_VarDP=0|18|0;DP=25;QUALapprox=498;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=18 GT:AD:DP:GQ:PL:SB 1:0,18,0:18:99:498,0,498:0,0,12,6 +chrX 2863082 . T . . END=2863178 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,670 +chrX 2863179 . G A, 908.04 . AS_QUALapprox=|918|0;AS_VarDP=1|29|0;BaseQRankSum=1.993;DP=32;MQRankSum=-0.134;QUALapprox=918;RAW_GT_COUNT=0,0,1;RAW_MQandDP=114161,32;ReadPosRankSum=0.925;VarDP=30 GT:AD:DP:GQ:PL:SB 1:1,29,0:30:99:918,0,942:0,1,19,10 +chrX 2863180 . T . . END=2863218 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,889 +chrX 2863219 . T C, 877.04 . AS_QUALapprox=|887|0;AS_VarDP=1|29|0;BaseQRankSum=-0.471;DP=32;MQRankSum=-0.134;QUALapprox=887;RAW_GT_COUNT=0,0,1;RAW_MQandDP=114161,32;ReadPosRankSum=-1.503;VarDP=30 GT:AD:DP:GQ:PL:SB 1:1,29,0:30:99:887,0,922:0,1,20,9 +chrX 2863220 . G . . END=2864263 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,778 +chrX 2864264 . A T, 1001.04 . AS_QUALapprox=|1011|0;AS_VarDP=0|33|0;DP=34;QUALapprox=1011;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1011,0,1011:0,0,18,15 +chrX 2864265 . T . . END=2864384 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,799 +chrX 2864385 . AT A, 610.01 . AS_QUALapprox=|620|0;AS_VarDP=0|24|0;DP=31;QUALapprox=620;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:620,0,620:0,0,12,12 +chrX 2864387 . T . . END=2864413 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,839 +chrX 2864414 . T C, 892.04 . AS_QUALapprox=|902|0;AS_VarDP=0|27|0;DP=28;QUALapprox=902;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:902,0,902:0,0,13,14 +chrX 2864415 . C . . END=2864591 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,690 +chrX 2864592 . G A, 834.04 . AS_QUALapprox=|844|0;AS_VarDP=0|26|0;DP=28;QUALapprox=844;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:844,0,844:0,0,13,13 +chrX 2864593 . G . . END=2865065 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,710 +chrX 2865066 . A G, 1032.04 . AS_QUALapprox=|1042|0;AS_VarDP=0|32|0;DP=33;QUALapprox=1042;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1042,0,1042:0,0,15,17 +chrX 2865067 . C . . END=2865513 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,927 +chrX 2865514 . T G, 997.04 . AS_QUALapprox=|1007|0;AS_VarDP=0|32|0;DP=32;QUALapprox=1007;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1007,0,1007:0,0,22,10 +chrX 2865515 . C . . END=2865734 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,868 +chrX 2865735 . T C, 1048.04 . AS_QUALapprox=|1058|0;AS_VarDP=0|32|0;DP=32;QUALapprox=1058;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1058,0,1058:0,0,19,13 +chrX 2865736 . C . . END=2865873 GT:DP:GQ:MIN_DP:PL 0:43:99:43:0,1032 +chrX 2865874 . T TCA, 1801.01 . AS_QUALapprox=|1811|0;AS_VarDP=0|41|0;DP=43;QUALapprox=1811;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154800,43;VarDP=41 GT:AD:DP:GQ:PL:SB 1:0,41,0:41:99:1811,0,1811:0,0,22,19 +chrX 2865875 . C . . END=2866009 GT:DP:GQ:MIN_DP:PL 0:39:99:39:0,1017 +chrX 2866010 . G A, 1280.04 . AS_QUALapprox=|1290|0;AS_VarDP=1|38|0;BaseQRankSum=3.750;DP=40;MQRankSum=0.000;QUALapprox=1290;RAW_GT_COUNT=0,0,1;RAW_MQandDP=144000,40;ReadPosRankSum=0.133;VarDP=39 GT:AD:DP:GQ:PL:SB 1:1,38,0:39:99:1290,0,1299:1,0,14,24 +chrX 2866011 . T . . END=2866835 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,571 +chrX 2866836 . TTA T, 1486.01 . AS_QUALapprox=|1496|0;AS_VarDP=0|34|0;DP=35;QUALapprox=1496;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1496,0,1496:0,0,23,11 +chrX 2866839 . A . . END=2867296 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,561 +chrX 2867297 . C CA, 870.01 . AS_QUALapprox=|880|0;AS_VarDP=0|27|0;DP=29;QUALapprox=880;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:880,0,880:0,0,15,12 +chrX 2867298 . A . . END=2867386 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,684 +chrX 2867387 . G T, 844.04 . AS_QUALapprox=|854|0;AS_VarDP=0|26|0;DP=28;QUALapprox=854;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:854,0,854:0,0,17,9 +chrX 2867388 . G . . END=2867996 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,661 +chrX 2867997 . G A, 788.04 . AS_QUALapprox=|798|0;AS_VarDP=0|23|0;DP=23;QUALapprox=798;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:798,0,798:0,0,11,12 +chrX 2867998 . A . . END=2869015 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,686 +chrX 2869016 . T TA, 536.01 . AS_QUALapprox=|546|0;AS_VarDP=0|22|0;DP=25;QUALapprox=546;RAW_GT_COUNT=0,0,1;RAW_MQandDP=88000,25;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:546,0,547:0,0,7,15 +chrX 2869017 . A . . END=2869413 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,804 +chrX 2869414 . G A, 903.04 . AS_QUALapprox=|913|0;AS_VarDP=0|28|0;DP=29;QUALapprox=913;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:913,0,913:0,0,12,16 +chrX 2869415 . T . . END=2869856 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,685 +chrX 2869857 . C G, 967.04 . AS_QUALapprox=|977|0;AS_VarDP=0|30|0;DP=31;QUALapprox=977;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:977,0,977:0,0,17,13 +chrX 2869858 . T . . END=2871004 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,718 +chrX 2871005 . A AT, 483.01 . AS_QUALapprox=|493|0;AS_VarDP=2|21|0;BaseQRankSum=-0.344;DP=24;MQRankSum=0.000;QUALapprox=493;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;ReadPosRankSum=-0.109;VarDP=23 GT:AD:DP:GQ:PL:SB 1:2,21,0:23:99:493,0,549:2,0,12,9 +chrX 2871006 . T . . END=2871382 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,661 +chrX 2871383 . C T, 1055.04 . AS_QUALapprox=|1065|0;AS_VarDP=0|25|0;DP=26;QUALapprox=1065;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:1065,0,1065:0,0,15,10 +chrX 2871384 . A . . END=2871386 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,849 +chrX 2871387 . TA T, 1081.01 . AS_QUALapprox=|1091|0;AS_VarDP=0|26|0;DP=27;QUALapprox=1091;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:1091,0,1091:0,0,15,11 +chrX 2871389 . A . . END=2871688 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,834 +chrX 2871689 . CAAATAAATAAATAAAT C, 1053.01 . AS_QUALapprox=|1063|0;AS_VarDP=0|25|0;DP=37;QUALapprox=1063;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133200,37;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:1063,0,1063:0,0,8,17 +chrX 2871706 . A . . END=2871806 GT:DP:GQ:MIN_DP:PL 0:43:99:43:0,860 +chrX 2871807 . T G, 1279.04 . AS_QUALapprox=|1289|0;AS_VarDP=0|42|0;DP=43;QUALapprox=1289;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154800,43;VarDP=42 GT:AD:DP:GQ:PL:SB 1:0,42,0:42:99:1289,0,1289:0,0,25,17 +chrX 2871808 . C . . END=2872106 GT:DP:GQ:MIN_DP:PL 0:39:99:39:0,1132 +chrX 2872107 . T C, 1146.04 . AS_QUALapprox=|1156|0;AS_VarDP=2|37|0;BaseQRankSum=2.483;DP=40;MQRankSum=0.000;QUALapprox=1156;RAW_GT_COUNT=0,0,1;RAW_MQandDP=144000,40;ReadPosRankSum=-0.350;VarDP=39 GT:AD:DP:GQ:PL:SB 1:2,37,0:39:99:1156,0,1206:1,1,19,18 +chrX 2872108 . T . . END=2873039 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,501 +chrX 2873040 . T C, 848.04 . AS_QUALapprox=|858|0;AS_VarDP=0|27|0;DP=28;QUALapprox=858;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:858,0,858:0,0,16,11 +chrX 2873041 . T . . END=2876032 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,674 +chrX 2876033 . CTTTTTTTT C, 429.01 . AS_QUALapprox=|439|0;AS_VarDP=2|11|0;BaseQRankSum=-0.471;DP=23;MQRankSum=0.000;QUALapprox=439;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;ReadPosRankSum=0.197;VarDP=13 GT:AD:DP:GQ:PL:SB 1:2,11,0:13:99:439,0,478:2,0,2,9 +chrX 2876042 . T . . END=2876419 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,485 +chrX 2876420 . G T, 660.04 . AS_QUALapprox=|670|0;AS_VarDP=0|20|0;DP=20;QUALapprox=670;RAW_GT_COUNT=0,0,1;RAW_MQandDP=72000,20;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:670,0,670:0,0,10,10 +chrX 2876421 . T . . END=2876816 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,640 +chrX 2876817 . T C, 1065.04 . AS_QUALapprox=|1075|0;AS_VarDP=0|36|0;DP=39;QUALapprox=1075;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133842,39;VarDP=36 GT:AD:DP:GQ:PL:SB 1:0,36,0:36:99:1075,0,1075:0,0,17,19 +chrX 2876818 . G . . END=2880414 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,537 +chrX 2880415 . AGT A, 916.01 . AS_QUALapprox=|926|0;AS_VarDP=1|28|0;DP=36;MQRankSum=0.000;QUALapprox=926;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129600,36;VarDP=29 GT:AD:DP:GQ:PL:SB 1:1,28,0:29:99:926,0,969:1,0,16,12 +chrX 2880418 . G . . END=2882253 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,526 +chrX 2882254 . G C, 1106.04 . AS_QUALapprox=|1116|0;AS_VarDP=0|33|0;DP=34;QUALapprox=1116;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1116,0,1116:0,0,8,25 +chrX 2882255 . G . . END=2882582 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,778 +chrX 2882583 . G T, 956.04 . AS_QUALapprox=|966|0;AS_VarDP=0|33|0;DP=35;QUALapprox=966;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:966,0,966:0,0,19,14 +chrX 2882584 . G . . END=2882635 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,946 +chrX 2882636 . A G, 911.04 . AS_QUALapprox=|921|0;AS_VarDP=0|32|0;DP=33;QUALapprox=921;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:921,0,921:0,0,18,14 +chrX 2882637 . G . . END=2882958 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,774 +chrX 2882959 . G A, 1041.04 . AS_QUALapprox=|1051|0;AS_VarDP=0|32|0;DP=35;QUALapprox=1051;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1051,0,1051:0,0,19,13 +chrX 2882960 . G . . END=2882984 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,848 +chrX 2882985 . T A, 937.04 . AS_QUALapprox=|947|0;AS_VarDP=0|29|0;DP=30;QUALapprox=947;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:947,0,947:0,0,14,15 +chrX 2882986 . A . . END=2883113 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,849 +chrX 2883114 . C A, 968.04 . AS_QUALapprox=|978|0;AS_VarDP=0|30|0;DP=31;QUALapprox=978;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:978,0,978:0,0,15,15 +chrX 2883115 . A . . END=2884684 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,600 +chrX 2884685 . T C, 899.04 . AS_QUALapprox=|909|0;AS_VarDP=0|27|0;DP=27;QUALapprox=909;RAW_GT_COUNT=0,0,1;RAW_MQandDP=94005,27;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:909,0,909:0,0,16,11 +chrX 2884686 . T . . END=2885086 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,769 +chrX 2885087 . GC G, 1024.01 . AS_QUALapprox=|1034|0;AS_VarDP=0|28|0;DP=32;QUALapprox=1034;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:1034,0,1034:0,0,9,19 +chrX 2885089 . C . . END=2885234 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,943 +chrX 2885235 . A G, 1023.04 . AS_QUALapprox=|1033|0;AS_VarDP=0|30|0;DP=34;QUALapprox=1033;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:1033,0,1033:0,0,9,21 +chrX 2885236 . T . . END=2885345 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,576 +chrX 2885346 . G A, 620.04 . AS_QUALapprox=|630|0;AS_VarDP=0|20|0;DP=22;QUALapprox=630;RAW_GT_COUNT=0,0,1;RAW_MQandDP=79200,22;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:630,0,630:0,0,12,8 +chrX 2885347 . G . . END=2885427 GT:DP:GQ:MIN_DP:PL 0:22:99:22:0,549 +chrX 2885428 . T C, 733.04 . AS_QUALapprox=|743|0;AS_VarDP=0|23|0;DP=24;QUALapprox=743;RAW_GT_COUNT=0,0,1;RAW_MQandDP=85825,24;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:743,0,743:0,0,14,9 +chrX 2885429 . G . . END=2885573 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,594 +chrX 2885574 . CA C, 330.01 . AS_QUALapprox=|340|0;AS_VarDP=0|14|0;DP=23;QUALapprox=340;RAW_GT_COUNT=0,0,1;RAW_MQandDP=80800,23;VarDP=14 GT:AD:DP:GQ:PL:SB 1:0,14,0:14:99:340,0,340:0,0,5,9 +chrX 2885576 . A . . END=2885607 GT:DP:GQ:MIN_DP:PL 0:20:99:20:0,610 +chrX 2885608 . AATTAAATC A, 881.01 . AS_QUALapprox=|891|0;AS_VarDP=0|20|0;DP=25;QUALapprox=891;RAW_GT_COUNT=0,0,1;RAW_MQandDP=88000,25;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:891,0,891:0,0,10,10 +chrX 2885617 . A . . END=2885646 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,694 +chrX 2885647 . T G, 995.04 . AS_QUALapprox=|1005|0;AS_VarDP=0|23|0;DP=23;QUALapprox=1005;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:1005,0,1005:0,0,14,9 +chrX 2885648 . T C, 995.04 . AS_QUALapprox=|1005|0;AS_VarDP=0|23|0;DP=23;QUALapprox=1005;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:1005,0,1005:0,0,14,9 +chrX 2885649 . T . . END=2885953 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,626 +chrX 2885954 . AT A, 782.01 . AS_QUALapprox=|792|0;AS_VarDP=0|26|0;DP=28;QUALapprox=792;RAW_GT_COUNT=0,0,1;RAW_MQandDP=77606,28;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:792,0,792:0,0,10,16 +chrX 2885956 . T . . END=2886382 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,640 +chrX 2886383 . C CTTTTT, 879.01 . AS_QUALapprox=|889|0;AS_VarDP=0|21|0;DP=29;QUALapprox=889;RAW_GT_COUNT=0,0,1;RAW_MQandDP=102232,29;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:889,0,890:0,0,14,7 +chrX 2886384 . T . . END=2887482 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,272 +chrX 2887483 . A AT, 341.01 . AS_QUALapprox=|351|0;AS_VarDP=0|16|0;DP=24;QUALapprox=351;RAW_GT_COUNT=0,0,1;RAW_MQandDP=80658,24;VarDP=16 GT:AD:DP:GQ:PL:SB 1:0,16,0:16:99:351,0,351:0,0,7,9 +chrX 2887484 . T . . END=2887744 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,540 +chrX 2887745 . T C, 883.04 . AS_QUALapprox=|893|0;AS_VarDP=0|28|0;DP=29;QUALapprox=893;RAW_GT_COUNT=0,0,1;RAW_MQandDP=102096,29;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:893,0,893:0,0,16,12 +chrX 2887746 . G . . END=2887762 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,838 +chrX 2887763 . A AAAG, 1159.01 . AS_QUALapprox=|1169|0;AS_VarDP=0|28|0;DP=35;QUALapprox=1169;RAW_GT_COUNT=0,0,1;RAW_MQandDP=123696,35;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:1169,0,1170:0,0,16,12 +chrX 2887764 . A . . END=2887865 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,571 +chrX 2887866 . C CAA, 626.01 . AS_QUALapprox=|636|0;AS_VarDP=0|19|0;DP=22;QUALapprox=636;RAW_GT_COUNT=0,0,1;RAW_MQandDP=78409,22;VarDP=19 GT:AD:DP:GQ:PL:SB 1:0,19,0:19:99:636,0,636:0,0,6,13 +chrX 2887867 . A . . END=2888154 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,635 +chrX 2888155 . G A, 841.04 . AS_QUALapprox=|851|0;AS_VarDP=0|26|0;DP=27;QUALapprox=851;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:851,0,851:0,0,15,11 +chrX 2888156 . G . . END=2888547 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,610 +chrX 2888548 . A G, 635.04 . AS_QUALapprox=|645|0;AS_VarDP=0|20|0;DP=22;QUALapprox=645;RAW_GT_COUNT=0,0,1;RAW_MQandDP=79200,22;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:645,0,645:0,0,6,14 +chrX 2888549 . A . . END=2890764 GT:DP:GQ:MIN_DP:PL 0:32:45:32:0,45 +chrX 2890765 . A . . END=2890769 GT:DP:GQ:MIN_DP:PL 0:7:0:7:0,0 +chrX 2890770 . T . . END=2890773 GT:DP:GQ:MIN_DP:PL 0:7:45:7:0,45 +chrX 2890774 . A . . END=2890780 GT:DP:GQ:MIN_DP:PL 0:6:10:6:0,10 +chrX 2890781 . C . . END=2890781 GT:DP:GQ:MIN_DP:PL 0:4:90:4:0,90 +chrX 2890782 . G . . END=2890782 GT:DP:GQ:MIN_DP:PL 0:4:10:4:0,10 +chrX 2890783 . A . . END=2890947 GT:DP:GQ:MIN_DP:PL 0:10:35:4:0,35 +chrX 2890948 . T G, 720.04 . AS_QUALapprox=|730|0;AS_VarDP=0|25|0;DP=25;QUALapprox=730;RAW_GT_COUNT=0,0,1;RAW_MQandDP=64783,25;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:730,0,730:0,0,13,12 +chrX 2890949 . G . . END=2891324 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,571 +chrX 2891325 . C G, 710.04 . AS_QUALapprox=|720|0;AS_VarDP=0|21|0;DP=22;QUALapprox=720;RAW_GT_COUNT=0,0,1;RAW_MQandDP=37617,22;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:720,0,720:0,0,12,9 +chrX 2891326 . C . . END=2891807 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,605 +chrX 2891808 . A C, 965.04 . AS_QUALapprox=|975|0;AS_VarDP=0|30|0;DP=33;QUALapprox=975;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:975,0,975:0,0,18,12 +chrX 2891809 . C . . END=2891933 GT:DP:GQ:MIN_DP:PL 0:37:99:37:0,1007 +chrX 2891934 . T C, 958.04 . AS_QUALapprox=|968|0;AS_VarDP=0|30|0;DP=30;QUALapprox=968;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:968,0,968:0,0,17,13 +chrX 2891935 . C . . END=2893812 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,417 +chrX 2893813 . C T, 614.04 . AS_QUALapprox=|624|0;AS_VarDP=0|15|0;DP=16;QUALapprox=624;RAW_GT_COUNT=0,0,1;RAW_MQandDP=57600,16;VarDP=15 GT:AD:DP:GQ:PL:SB 1:0,15,0:15:99:624,0,624:0,0,7,8 +chrX 2893814 . A . . END=2893825 GT:DP:GQ:MIN_DP:PL 0:14:99:14:0,325 +chrX 2893826 . G GTA, 621.01 . AS_QUALapprox=|631|0;AS_VarDP=0|15|0;DP=17;QUALapprox=631;RAW_GT_COUNT=0,0,1;RAW_MQandDP=58084,17;VarDP=15 GT:AD:DP:GQ:PL:SB 1:0,15,0:15:99:631,0,631:0,0,6,9 +chrX 2893827 . T . . END=2893971 GT:DP:GQ:MIN_DP:PL 0:21:99:21:0,421 +chrX 2893972 . T C,TAC, 740.04 . AS_QUALapprox=|750|210|0;AS_VarDP=1|16|0|0;BaseQRankSum=4.250;DP=27;MQRankSum=0.000;QUALapprox=750;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93650,27;ReadPosRankSum=-0.307;VarDP=17 GT:AD:DP:GQ:PL:SB 1:1,16,0,0:17:99:750,0,540,650:0,1,8,8 +chrX 2893973 . A . . END=2894399 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,578 +chrX 2894400 . T A, 853.04 . AS_QUALapprox=|863|0;AS_VarDP=0|26|0;DP=28;QUALapprox=863;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:863,0,863:0,0,9,17 +chrX 2894401 . A . . END=2895245 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,814 +chrX 2895246 . T C, 1155.04 . AS_QUALapprox=|1165|0;AS_VarDP=0|39|0;DP=41;QUALapprox=1165;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147600,41;VarDP=39 GT:AD:DP:GQ:PL:SB 1:0,39,0:39:99:1165,0,1165:0,0,20,19 +chrX 2895247 . G . . END=2895633 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,495 +chrX 2895634 . CAAAAAAAAAAAAAAAAAAAAAAA C, 459.01 . AS_QUALapprox=|469|0;AS_VarDP=1|12|0;DP=23;MQRankSum=-0.361;QUALapprox=469;RAW_GT_COUNT=0,0,1;RAW_MQandDP=79638,23;VarDP=13 GT:AD:DP:GQ:PL:SB 1:1,12,0:13:99:469,0,488:0,1,8,4 +chrX 2895658 . A . . END=2895718 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,477 +chrX 2895719 . A G, 1340.04 . AS_QUALapprox=|1350|0;AS_VarDP=0|30|0;DP=30;QUALapprox=1350;RAW_GT_COUNT=0,0,1;RAW_MQandDP=99565,30;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:1350,0,1350:0,0,16,14 +chrX 2895720 . G . . END=2895723 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,828 +chrX 2895724 . T C, 1340.04 . AS_QUALapprox=|1350|0;AS_VarDP=0|30|0;DP=31;QUALapprox=1350;RAW_GT_COUNT=0,0,1;RAW_MQandDP=101165,31;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:1350,0,1350:0,0,16,14 +chrX 2895725 . G . . END=2895728 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,823 +chrX 2895729 . T C, 1385.04 . AS_QUALapprox=|1395|0;AS_VarDP=0|31|0;DP=32;QUALapprox=1395;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104765,32;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1395,0,1395:0,0,16,15 +chrX 2895730 . G . . END=2895734 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,813 +chrX 2895735 . A G, 1419.04 . AS_QUALapprox=|1429|0;AS_VarDP=0|32|0;DP=33;QUALapprox=1429;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108365,33;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1429,0,1429:0,0,17,15 +chrX 2895736 . A . . END=2895812 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,666 +chrX 2895813 . T A, 717.04 . AS_QUALapprox=|727|0;AS_VarDP=0|23|0;DP=28;QUALapprox=727;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97049,28;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:727,0,727:0,0,9,14 +chrX 2895814 . A . . END=2895876 GT:DP:GQ:MIN_DP:PL 0:21:99:21:0,576 +chrX 2895877 . A G, 570.04 . AS_QUALapprox=|580|0;AS_VarDP=0|19|0;DP=21;QUALapprox=580;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75600,21;VarDP=19 GT:AD:DP:GQ:PL:SB 1:0,19,0:19:99:580,0,580:0,0,8,11 +chrX 2895878 . G . . END=2895922 GT:DP:GQ:MIN_DP:PL 0:19:99:19:0,545 +chrX 2895923 . A G, 980.04 . AS_QUALapprox=|990|0;AS_VarDP=0|22|0;DP=22;QUALapprox=990;RAW_GT_COUNT=0,0,1;RAW_MQandDP=79200,22;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:990,0,990:0,0,9,13 +chrX 2895924 . C . . END=2895941 GT:DP:GQ:MIN_DP:PL 0:22:99:22:0,635 +chrX 2895942 . TG T, 1070.01 . AS_QUALapprox=|1080|0;AS_VarDP=0|24|0;DP=24;QUALapprox=1080;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:1080,0,1080:0,0,10,14 +chrX 2895944 . G . . END=2895946 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,675 +chrX 2895947 . A G, 1070.04 . AS_QUALapprox=|1080|0;AS_VarDP=0|24|0;DP=24;QUALapprox=1080;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:1080,0,1080:0,0,10,14 +chrX 2895948 . A . . END=2895951 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,675 +chrX 2895952 . A G, 1115.04 . AS_QUALapprox=|1125|0;AS_VarDP=0|25|0;DP=25;QUALapprox=1125;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:1125,0,1125:0,0,10,15 +chrX 2895953 . G . . END=2895953 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,719 +chrX 2895954 . C T, 1160.04 . AS_QUALapprox=|1170|0;AS_VarDP=0|26|0;DP=26;QUALapprox=1170;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:1170,0,1170:0,0,10,16 +chrX 2895955 . G . . END=2895967 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,714 +chrX 2895968 . AAAATAAAT A, 1295.01 . AS_QUALapprox=|1305|0;AS_VarDP=0|29|0;DP=30;QUALapprox=1305;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:1305,0,1305:0,0,14,15 +chrX 2895977 . A . . END=2896118 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,774 +chrX 2896119 . C T, 1216.04 . AS_QUALapprox=|1226|0;AS_VarDP=0|38|0;DP=41;QUALapprox=1226;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147600,41;VarDP=38 GT:AD:DP:GQ:PL:SB 1:0,38,0:38:99:1226,0,1226:0,0,21,17 +chrX 2896120 . G . . END=2896612 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,322 +chrX 2896613 . C CA, 344.01 . AS_QUALapprox=|354|0;AS_VarDP=0|16|0;DP=18;QUALapprox=354;RAW_GT_COUNT=0,0,1;RAW_MQandDP=64800,18;VarDP=16 GT:AD:DP:GQ:PL:SB 1:0,16,0:16:99:354,0,354:0,0,6,10 +chrX 2896614 . A . . END=2896797 GT:DP:GQ:MIN_DP:PL 0:18:99:18:0,402 +chrX 2896798 . A G, 539.04 . AS_QUALapprox=|549|0;AS_VarDP=0|18|0;DP=18;QUALapprox=549;RAW_GT_COUNT=0,0,1;RAW_MQandDP=64225,18;VarDP=18 GT:AD:DP:GQ:PL:SB 1:0,18,0:18:99:549,0,549:0,0,9,9 +chrX 2896799 . G . . END=2896886 GT:DP:GQ:MIN_DP:PL 0:20:99:20:0,571 +chrX 2896887 . A G, 650.04 . AS_QUALapprox=|660|0;AS_VarDP=0|21|0;DP=21;QUALapprox=660;RAW_GT_COUNT=0,0,1;RAW_MQandDP=74450,21;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:660,0,660:0,0,10,11 +chrX 2896888 . G . . END=2896932 GT:DP:GQ:MIN_DP:PL 0:20:99:20:0,476 +chrX 2896933 . A G, 425.04 . AS_QUALapprox=|435|0;AS_VarDP=1|18|0;BaseQRankSum=-0.989;DP=19;MQRankSum=0.000;QUALapprox=435;RAW_GT_COUNT=0,0,1;RAW_MQandDP=67825,19;ReadPosRankSum=0.365;VarDP=19 GT:AD:DP:GQ:PL:SB 1:1,18,0:19:99:435,0,470:1,0,9,9 +chrX 2896934 . G . . END=2897145 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,531 +chrX 2897146 . A C, 744.04 . AS_QUALapprox=|754|0;AS_VarDP=0|23|0;DP=25;QUALapprox=754;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:754,0,754:0,0,16,7 +chrX 2897147 . A . . END=2898040 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,553 +chrX 2898041 . T C, 1296.04 . AS_QUALapprox=|1306|0;AS_VarDP=0|39|0;DP=43;QUALapprox=1306;RAW_GT_COUNT=0,0,1;RAW_MQandDP=150745,43;VarDP=39 GT:AD:DP:GQ:PL:SB 1:0,39,0:39:99:1306,0,1306:0,0,16,23 +chrX 2898042 . G . . END=2899650 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,630 +chrX 2899651 . C CT, 685.01 . AS_QUALapprox=|695|0;AS_VarDP=0|24|0;DP=25;QUALapprox=695;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:695,0,696:0,0,15,9 +chrX 2899652 . T . . END=2899768 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,645 +chrX 2899769 . A AT, 312.01 . AS_QUALapprox=|322|0;AS_VarDP=0|17|0;DP=30;QUALapprox=322;RAW_GT_COUNT=0,0,1;RAW_MQandDP=106249,30;VarDP=17 GT:AD:DP:GQ:PL:SB 1:0,17,0:17:99:322,0,322:0,0,9,8 +chrX 2899770 . T . . END=2900251 GT:DP:GQ:MIN_DP:PL 0:37:99:37:0,689 +chrX 2900252 . GTTTTTTTTTTT G, 500.01 . AS_QUALapprox=|510|0;AS_VarDP=3|14|0;BaseQRankSum=-0.552;DP=31;MQRankSum=0.000;QUALapprox=510;RAW_GT_COUNT=0,0,1;RAW_MQandDP=106900,31;ReadPosRankSum=0.812;VarDP=17 GT:AD:DP:GQ:PL:SB 1:3,14,0:17:99:510,0,595:1,2,3,11 +chrX 2900264 . T . . END=2900398 GT:DP:GQ:MIN_DP:PL 0:22:99:22:0,436 +chrX 2900399 . G T, 770.04 . AS_QUALapprox=|780|0;AS_VarDP=0|23|0;DP=27;QUALapprox=780;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:780,0,780:0,0,8,15 +chrX 2900400 . A . . END=2900777 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,591 +chrX 2900778 . A C, 1228.04 . AS_QUALapprox=|1238|0;AS_VarDP=0|37|0;DP=38;QUALapprox=1238;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;VarDP=37 GT:AD:DP:GQ:PL:SB 1:0,37,0:37:99:1238,0,1238:0,0,23,14 +chrX 2900779 . A . . END=2900876 GT:DP:GQ:MIN_DP:PL 0:43:99:43:0,1082 +chrX 2900877 . T C, 1046.04 . AS_QUALapprox=|1056|0;AS_VarDP=0|33|0;DP=34;QUALapprox=1056;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1056,0,1056:0,0,17,16 +chrX 2900878 . G . . END=2901340 GT:DP:GQ:MIN_DP:PL 0:37:99:37:0,939 +chrX 2901341 . A G, 958.04 . AS_QUALapprox=|968|0;AS_VarDP=0|29|0;DP=32;QUALapprox=968;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:968,0,968:0,0,15,14 +chrX 2901342 . G . . END=2901463 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,665 +chrX 2901464 . C T, 689.04 . AS_QUALapprox=|699|0;AS_VarDP=0|22|0;DP=22;QUALapprox=699;RAW_GT_COUNT=0,0,1;RAW_MQandDP=79200,22;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:699,0,699:0,0,12,10 +chrX 2901465 . A . . END=2901495 GT:DP:GQ:MIN_DP:PL 0:21:99:21:0,596 +chrX 2901496 . T TTCTCGTGATAGTGAATAAGTCTTTTGTGATATGCTGA, 1050.01 . AS_QUALapprox=|1060|0;AS_VarDP=0|27|0;DP=33;QUALapprox=1060;RAW_GT_COUNT=0,0,1;RAW_MQandDP=113562,33;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:1060,0,1065:0,0,11,16 +chrX 2901497 . T . . END=2901575 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,555 +chrX 2901576 . C T, 875.04 . AS_QUALapprox=|885|0;AS_VarDP=0|26|0;DP=28;QUALapprox=885;RAW_GT_COUNT=0,0,1;RAW_MQandDP=95562,28;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:885,0,885:0,0,13,13 +chrX 2901577 . A . . END=2902143 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,641 +chrX 2902144 . A G, 789.04 . AS_QUALapprox=|799|0;AS_VarDP=0|24|0;DP=26;QUALapprox=799;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:799,0,799:0,0,14,10 +chrX 2902145 . C . . END=2902290 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,720 +chrX 2902291 . T C, 886.04 . AS_QUALapprox=|896|0;AS_VarDP=0|29|0;DP=31;QUALapprox=896;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:896,0,896:0,0,9,20 +chrX 2902292 . G . . END=2902413 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,903 +chrX 2902414 . G C, 1052.04 . AS_QUALapprox=|1062|0;AS_VarDP=0|33|0;DP=33;QUALapprox=1062;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1062,0,1062:0,0,23,10 +chrX 2902415 . C . . END=2902666 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,843 +chrX 2902667 . C T, 1112.04 . AS_QUALapprox=|1122|0;AS_VarDP=0|34|0;DP=34;QUALapprox=1122;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1122,0,1122:0,0,20,14 +chrX 2902668 . C . . END=2902785 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,676 +chrX 2902786 . CAG C, 731.01 . AS_QUALapprox=|741|0;AS_VarDP=0|20|0;DP=21;QUALapprox=741;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75600,21;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:741,0,741:0,0,10,10 +chrX 2902789 . A . . END=2903162 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,724 +chrX 2903163 . T C, 1237.04 . AS_QUALapprox=|1247|0;AS_VarDP=0|28|0;DP=29;QUALapprox=1247;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:1247,0,1247:0,0,12,16 +chrX 2903164 . C . . END=2903177 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,817 +chrX 2903178 . C T, 1334.04 . AS_QUALapprox=|1344|0;AS_VarDP=0|31|0;DP=31;QUALapprox=1344;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1344,0,1344:0,0,13,18 +chrX 2903179 . A . . END=2903310 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,670 +chrX 2903311 . C T, 645.04 . AS_QUALapprox=|655|0;AS_VarDP=0|20|0;DP=20;QUALapprox=655;RAW_GT_COUNT=0,0,1;RAW_MQandDP=72000,20;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:655,0,655:0,0,6,14 +chrX 2903312 . T . . END=2903408 GT:DP:GQ:MIN_DP:PL 0:21:99:21:0,595 +chrX 2903409 . G A, 858.04 . AS_QUALapprox=|868|0;AS_VarDP=0|26|0;DP=26;QUALapprox=868;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:868,0,868:0,0,14,12 +chrX 2903410 . T . . END=2903826 GT:DP:GQ:MIN_DP:PL 0:22:99:22:0,536 +chrX 2903827 . C T, 700.04 . AS_QUALapprox=|710|0;AS_VarDP=2|23|0;BaseQRankSum=-0.319;DP=25;MQRankSum=0.000;QUALapprox=710;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;ReadPosRankSum=0.150;VarDP=25 GT:AD:DP:GQ:PL:SB 1:2,23,0:25:99:710,0,780:2,0,13,10 +chrX 2903828 . G . . END=2904211 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,698 +chrX 2904212 . C T, 1022.04 . AS_QUALapprox=|1032|0;AS_VarDP=0|31|0;DP=32;QUALapprox=1032;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1032,0,1032:0,0,20,11 +chrX 2904213 . T . . END=2904559 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,735 +chrX 2904560 . G T, 833.04 . AS_QUALapprox=|843|0;AS_VarDP=0|25|0;DP=27;QUALapprox=843;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:843,0,843:0,0,9,16 +chrX 2904561 . G . . END=2904902 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,625 +chrX 2904903 . CT C, 357.01 . AS_QUALapprox=|367|0;AS_VarDP=0|17|0;DP=21;QUALapprox=367;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75600,21;VarDP=17 GT:AD:DP:GQ:PL:SB 1:0,17,0:17:99:367,0,367:0,0,7,10 +chrX 2904905 . T . . END=2905543 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,539 +chrX 2905544 . C T, 758.04 . AS_QUALapprox=|768|0;AS_VarDP=0|24|0;DP=24;QUALapprox=768;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:768,0,768:0,0,13,11 +chrX 2905545 . A . . END=2905616 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,735 +chrX 2905617 . T A, 892.04 . AS_QUALapprox=|902|0;AS_VarDP=0|30|0;DP=34;QUALapprox=902;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:902,0,902:0,0,14,16 +chrX 2905618 . C . . END=2905641 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,912 +chrX 2905642 . T G, 848.04 . AS_QUALapprox=|858|0;AS_VarDP=0|27|0;DP=29;QUALapprox=858;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:858,0,858:0,0,12,15 +chrX 2905643 . C . . END=2906135 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,597 +chrX 2906136 . AT A, 339.01 . AS_QUALapprox=|349|0;AS_VarDP=0|16|0;DP=22;QUALapprox=349;RAW_GT_COUNT=0,0,1;RAW_MQandDP=79200,22;VarDP=16 GT:AD:DP:GQ:PL:SB 1:0,16,0:16:99:349,0,349:0,0,8,8 +chrX 2906138 . T . . END=2906168 GT:DP:GQ:MIN_DP:PL 0:20:99:20:0,526 +chrX 2906169 . A G, 570.04 . AS_QUALapprox=|580|0;AS_VarDP=0|18|0;DP=18;QUALapprox=580;RAW_GT_COUNT=0,0,1;RAW_MQandDP=64800,18;VarDP=18 GT:AD:DP:GQ:PL:SB 1:0,18,0:18:99:580,0,580:0,0,8,10 +chrX 2906170 . C . . END=2907000 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,422 +chrX 2907001 . T C, 735.04 . AS_QUALapprox=|745|0;AS_VarDP=1|22|0;BaseQRankSum=3.545;DP=25;MQRankSum=0.000;QUALapprox=745;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;ReadPosRankSum=0.981;VarDP=23 GT:AD:DP:GQ:PL:SB 1:1,22,0:23:99:745,0,755:0,1,13,9 +chrX 2907002 . G . . END=2907092 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,770 +chrX 2907093 . A G, 932.04 . AS_QUALapprox=|942|0;AS_VarDP=0|29|0;DP=30;QUALapprox=942;RAW_GT_COUNT=0,0,1;RAW_MQandDP=106000,30;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:942,0,942:0,0,14,15 +chrX 2907094 . G . . END=2907115 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,745 +chrX 2907116 . C CAAAA, 1001.01 . AS_QUALapprox=|1011|0;AS_VarDP=0|24|0;DP=25;QUALapprox=1011;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:1011,0,1011:0,0,12,12 +chrX 2907117 . A . . END=2907361 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,671 +chrX 2907362 . A G, 1032.04 . AS_QUALapprox=|1042|0;AS_VarDP=0|32|0;DP=33;QUALapprox=1042;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1042,0,1042:0,0,17,15 +chrX 2907363 . T . . END=2907712 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,953 +chrX 2907713 . T A, 1652.04 . AS_QUALapprox=|1662|0;AS_VarDP=0|39|0;DP=39;QUALapprox=1662;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140400,39;VarDP=39 GT:AD:DP:GQ:PL:SB 1:0,39,0:39:99:1662,0,1662:0,0,25,14 +chrX 2907714 . A . . END=2907736 GT:DP:GQ:MIN_DP:PL 0:40:99:40:0,1251 +chrX 2907737 . G A, 1702.04 . AS_QUALapprox=|1712|0;AS_VarDP=0|42|0;DP=42;QUALapprox=1712;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151200,42;VarDP=42 GT:AD:DP:GQ:PL:SB 1:0,42,0:42:99:1712,0,1712:0,0,25,17 +chrX 2907738 . T . . END=2907885 GT:DP:GQ:MIN_DP:PL 0:40:99:40:0,1106 +chrX 2907886 . G A, 1324.04 . AS_QUALapprox=|1334|0;AS_VarDP=0|41|0;DP=42;QUALapprox=1334;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151200,42;VarDP=41 GT:AD:DP:GQ:PL:SB 1:0,41,0:41:99:1334,0,1334:0,0,16,25 +chrX 2907887 . C . . END=2908128 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,833 +chrX 2908129 . G A, 822.04 . AS_QUALapprox=|832|0;AS_VarDP=0|26|0;DP=26;QUALapprox=832;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:832,0,832:0,0,15,11 +chrX 2908130 . A . . END=2908197 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,680 +chrX 2908198 . T C, 838.04 . AS_QUALapprox=|848|0;AS_VarDP=0|25|0;DP=25;QUALapprox=848;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:848,0,848:0,0,13,12 +chrX 2908199 . C . . END=2908534 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,467 +chrX 2908535 . C CT, 381.01 . AS_QUALapprox=|391|0;AS_VarDP=0|13|0;DP=17;QUALapprox=391;RAW_GT_COUNT=0,0,1;RAW_MQandDP=58276,17;VarDP=13 GT:AD:DP:GQ:PL:SB 1:0,13,0:13:99:391,0,438:0,0,4,8 +chrX 2908536 . C . . END=2908666 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,462 +chrX 2908667 . C T, 902.04 . AS_QUALapprox=|912|0;AS_VarDP=0|27|0;DP=28;QUALapprox=912;RAW_GT_COUNT=0,0,1;RAW_MQandDP=98800,28;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:912,0,912:0,0,16,11 +chrX 2908668 . A . . END=2909079 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,510 +chrX 2909080 . G GCACACACACA, 1203.01 . AS_QUALapprox=|1213|0;AS_VarDP=0|27|0;DP=36;QUALapprox=1213;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126234,36;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:1213,0,1215:0,0,19,8 +chrX 2909081 . C . . END=2909359 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,744 +chrX 2909360 . G A, 1166.04 . AS_QUALapprox=|1176|0;AS_VarDP=0|35|0;DP=37;QUALapprox=1176;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133200,37;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,35,0:35:99:1176,0,1176:0,0,10,25 +chrX 2909361 . T . . END=2909638 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,595 +chrX 2909639 . A G, 560.04 . AS_QUALapprox=|570|0;AS_VarDP=0|19|0;DP=19;QUALapprox=570;RAW_GT_COUNT=0,0,1;RAW_MQandDP=65249,19;VarDP=19 GT:AD:DP:GQ:PL:SB 1:0,19,0:19:99:570,0,570:0,0,9,10 +chrX 2909640 . T . . END=2909682 GT:DP:GQ:MIN_DP:PL 0:15:99:15:0,315 +chrX 2909683 . CA C, 11 . AS_QUALapprox=|21|0;AS_VarDP=3|4|0;BaseQRankSum=0.524;DP=17;MQRankSum=0.000;QUALapprox=21;RAW_GT_COUNT=0,0,1;RAW_MQandDP=59200,17;ReadPosRankSum=0.524;VarDP=7 GT:AD:DP:GQ:PL:SB 1:3,4,0:7:21:21,0,83:0,3,3,1 +chrX 2909685 . A . . END=2909752 GT:DP:GQ:MIN_DP:PL 0:10:99:10:0,233 +chrX 2909753 . T TA, 237.01 . AS_QUALapprox=|247|0;AS_VarDP=0|9|0;DP=10;QUALapprox=247;RAW_GT_COUNT=0,0,1;RAW_MQandDP=36000,10;VarDP=9 GT:AD:DP:GQ:PL:SB 1:0,9,0:9:99:247,0,247:0,0,4,5 +chrX 2909754 . A . . END=2910315 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,303 +chrX 2910316 . T TTAA, 1499.01 . AS_QUALapprox=|1509|0;AS_VarDP=0|34|0;DP=36;QUALapprox=1509;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129600,36;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1509,0,1509:0,0,18,16 +chrX 2910317 . T . . END=2911579 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,720 +chrX 2911580 . G A, 650.04 . AS_QUALapprox=|660|0;AS_VarDP=0|20|0;DP=22;QUALapprox=660;RAW_GT_COUNT=0,0,1;RAW_MQandDP=73505,22;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:660,0,660:0,0,7,13 +chrX 2911581 . A . . END=2911668 GT:DP:GQ:MIN_DP:PL 0:22:99:22:0,495 +chrX 2911669 . CA C, 216.01 . AS_QUALapprox=|226|0;AS_VarDP=1|10|0;DP=23;MQRankSum=1.615;QUALapprox=226;RAW_GT_COUNT=0,0,1;RAW_MQandDP=67163,23;VarDP=11 GT:AD:DP:GQ:PL:SB 1:1,10,0:11:99:226,0,248:0,1,6,4 +chrX 2911671 . A . . END=2911685 GT:DP:GQ:MIN_DP:PL 0:15:99:15:0,466 +chrX 2911686 . GA G, 277.01 . AS_QUALapprox=|287|0;AS_VarDP=1|11|0;BaseQRankSum=0.000;DP=20;MQRankSum=2.227;QUALapprox=287;RAW_GT_COUNT=0,0,1;RAW_MQandDP=56363,20;ReadPosRankSum=0.872;VarDP=12 GT:AD:DP:GQ:PL:SB 1:1,11,0:12:99:287,0,315:0,1,8,3 +chrX 2911688 . A . . END=2911734 GT:DP:GQ:MIN_DP:PL 0:15:99:15:0,407 +chrX 2911735 . T A, 600.04 . AS_QUALapprox=|610|0;AS_VarDP=0|17|0;DP=17;QUALapprox=610;RAW_GT_COUNT=0,0,1;RAW_MQandDP=61200,17;VarDP=17 GT:AD:DP:GQ:PL:SB 1:0,17,0:17:99:610,0,610:0,0,14,3 +chrX 2911736 . T . . END=2911961 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,421 +chrX 2911962 . C G, 1146.04 . AS_QUALapprox=|1156|0;AS_VarDP=0|36|0;DP=38;QUALapprox=1156;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;VarDP=36 GT:AD:DP:GQ:PL:SB 1:0,36,0:36:99:1156,0,1156:0,0,20,16 +chrX 2911963 . C . . END=2912249 GT:DP:GQ:MIN_DP:PL 0:42:99:42:0,923 +chrX 2912250 . T C, 980.04 . AS_QUALapprox=|990|0;AS_VarDP=0|30|0;DP=30;QUALapprox=990;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:990,0,990:0,0,12,18 +chrX 2912251 . T . . END=2912592 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,725 +chrX 2912593 . C G, 882.04 . AS_QUALapprox=|892|0;AS_VarDP=0|29|0;DP=31;QUALapprox=892;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:892,0,892:0,0,11,18 +chrX 2912594 . C . . END=2914234 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,411 +chrX 2914235 . C CT, 713.01 . AS_QUALapprox=|723|0;AS_VarDP=0|27|0;DP=29;QUALapprox=723;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:723,0,723:0,0,13,14 +chrX 2914236 . T . . END=2914417 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,704 +chrX 2914418 . TGGG T, 1059.01 . AS_QUALapprox=|1069|0;AS_VarDP=0|24|0;DP=27;QUALapprox=1069;RAW_GT_COUNT=0,0,1;RAW_MQandDP=95716,27;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:1069,0,1069:0,0,10,14 +chrX 2914422 . G . . END=2914697 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,532 +chrX 2914698 . C T, 1329.04 . AS_QUALapprox=|1339|0;AS_VarDP=0|30|0;DP=32;QUALapprox=1339;RAW_GT_COUNT=0,0,1;RAW_MQandDP=113162,32;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:1339,0,1339:0,0,17,13 +chrX 2914699 . G . . END=2914700 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,952 +chrX 2914701 . G C, 1329.04 . AS_QUALapprox=|1339|0;AS_VarDP=0|30|0;DP=31;QUALapprox=1339;RAW_GT_COUNT=0,0,1;RAW_MQandDP=109562,31;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:1339,0,1339:0,0,17,13 +chrX 2914702 . T . . END=2915098 GT:DP:GQ:MIN_DP:PL 0:37:99:37:0,986 +chrX 2915099 . C G, 1056.04 . AS_QUALapprox=|1066|0;AS_VarDP=0|34|0;DP=34;QUALapprox=1066;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1066,0,1066:0,0,14,20 +chrX 2915100 . T . . END=2915256 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,770 +chrX 2915257 . C T, 1526.04 . AS_QUALapprox=|1536|0;AS_VarDP=0|36|0;DP=36;QUALapprox=1536;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129600,36;VarDP=36 GT:AD:DP:GQ:PL:SB 1:0,36,0:36:99:1536,0,1536:0,0,21,15 +chrX 2915258 . G . . END=2915278 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,1072 +chrX 2915279 . C G, 1477.04 . AS_QUALapprox=|1487|0;AS_VarDP=0|34|0;DP=34;QUALapprox=1487;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1487,0,1487:0,0,18,16 +chrX 2915280 . G . . END=2915310 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,1032 +chrX 2915311 . C T, 1072.04 . AS_QUALapprox=|1082|0;AS_VarDP=0|32|0;DP=32;QUALapprox=1082;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1082,0,1082:0,0,16,16 +chrX 2915312 . A . . END=2915464 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,902 +chrX 2915465 . G C, 1141.04 . AS_QUALapprox=|1151|0;AS_VarDP=1|36|0;BaseQRankSum=2.065;DP=39;MQRankSum=0.000;QUALapprox=1151;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140400,39;ReadPosRankSum=1.687;VarDP=37 GT:AD:DP:GQ:PL:SB 1:1,36,0:37:99:1151,0,1176:1,0,17,19 +chrX 2915466 . T . . END=2915814 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,800 +chrX 2915815 . T C, 1176.04 . AS_QUALapprox=|1186|0;AS_VarDP=0|37|0;DP=39;QUALapprox=1186;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140400,39;VarDP=37 GT:AD:DP:GQ:PL:SB 1:0,37,0:37:99:1186,0,1186:0,0,14,23 +chrX 2915816 . C . . END=2916031 GT:DP:GQ:MIN_DP:PL 0:18:99:18:0,313 +chrX 2916032 . C T, 512.04 . AS_QUALapprox=|522|0;AS_VarDP=0|15|0;DP=15;QUALapprox=522;RAW_GT_COUNT=0,0,1;RAW_MQandDP=54000,15;VarDP=15 GT:AD:DP:GQ:PL:SB 1:0,15,0:15:99:522,0,522:0,0,8,7 +chrX 2916033 . G . . END=2916130 GT:DP:GQ:MIN_DP:PL 0:17:99:17:0,397 +chrX 2916131 . C CA, 206.01 . AS_QUALapprox=|216|0;AS_VarDP=1|12|0;BaseQRankSum=-0.319;DP=20;MQRankSum=0.000;QUALapprox=216;RAW_GT_COUNT=0,0,1;RAW_MQandDP=70000,20;ReadPosRankSum=0.412;VarDP=13 GT:AD:DP:GQ:PL:SB 1:1,12,0:13:99:216,0,236:1,0,3,9 +chrX 2916132 . A . . END=2916413 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,564 +chrX 2916414 . C T, 973.04 . AS_QUALapprox=|983|0;AS_VarDP=0|30|0;DP=31;QUALapprox=983;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:983,0,983:0,0,18,12 +chrX 2916415 . C . . END=2916488 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,823 +chrX 2916489 . G C, 855.04 . AS_QUALapprox=|865|0;AS_VarDP=0|27|0;DP=28;QUALapprox=865;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:865,0,865:0,0,14,13 +chrX 2916490 . C . . END=2916681 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,561 +chrX 2916682 . C T, 793.04 . AS_QUALapprox=|803|0;AS_VarDP=0|26|0;DP=27;QUALapprox=803;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:803,0,803:0,0,12,14 +chrX 2916683 . G . . END=2916798 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,678 +chrX 2916799 . C T, 1126.04 . AS_QUALapprox=|1136|0;AS_VarDP=0|36|0;DP=36;QUALapprox=1136;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129600,36;VarDP=36 GT:AD:DP:GQ:PL:SB 1:0,36,0:36:99:1136,0,1136:0,0,17,19 +chrX 2916800 . G . . END=2917065 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,606 +chrX 2917066 . CA C, 259.01 . AS_QUALapprox=|269|0;AS_VarDP=1|14|0;DP=23;MQRankSum=0.000;QUALapprox=269;RAW_GT_COUNT=0,0,1;RAW_MQandDP=81904,23;VarDP=15 GT:AD:DP:GQ:PL:SB 1:1,14,0:15:99:269,0,289:0,1,12,2 +chrX 2917068 . A . . END=2918694 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,600 +chrX 2918695 . A G, 1374.04 . AS_QUALapprox=|1384|0;AS_VarDP=0|31|0;DP=31;QUALapprox=1384;RAW_GT_COUNT=0,0,1;RAW_MQandDP=107025,31;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1384,0,1384:0,0,13,18 +chrX 2918696 . T C, 1374.04 . AS_QUALapprox=|1384|0;AS_VarDP=0|31|0;DP=31;QUALapprox=1384;RAW_GT_COUNT=0,0,1;RAW_MQandDP=107025,31;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1384,0,1384:0,0,13,18 +chrX 2918697 . G . . END=2918745 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,765 +chrX 2918746 . C T, 735.04 . AS_QUALapprox=|745|0;AS_VarDP=0|22|0;DP=25;QUALapprox=745;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86000,25;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:745,0,745:0,0,12,10 +chrX 2918747 . A . . END=2919217 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,223 +chrX 2919218 . G GTCC, 530.01 . AS_QUALapprox=|540|0;AS_VarDP=0|12|0;DP=14;QUALapprox=540;RAW_GT_COUNT=0,0,1;RAW_MQandDP=18440,14;VarDP=12 GT:AD:DP:GQ:PL:SB 1:0,12,0:12:99:540,0,540:0,0,5,7 +chrX 2919219 . T . . END=2919249 GT:DP:GQ:MIN_DP:PL 0:17:99:17:0,442 +chrX 2919250 . A G, 561.04 . AS_QUALapprox=|571|0;AS_VarDP=0|18|0;DP=18;QUALapprox=571;RAW_GT_COUNT=0,0,1;RAW_MQandDP=34456,18;VarDP=18 GT:AD:DP:GQ:PL:SB 1:0,18,0:18:99:571,0,571:0,0,10,8 +chrX 2919251 . G . . END=2919414 GT:DP:GQ:MIN_DP:PL 0:19:99:19:0,357 +chrX 2919415 . A C, 526.04 . AS_QUALapprox=|536|0;AS_VarDP=0|16|0;DP=16;QUALapprox=536;RAW_GT_COUNT=0,0,1;RAW_MQandDP=41516,16;VarDP=16 GT:AD:DP:GQ:PL:SB 1:0,16,0:16:99:536,0,536:0,0,11,5 +chrX 2919416 . C . . END=2919699 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,397 +chrX 2919700 . T C, 779.04 . AS_QUALapprox=|789|0;AS_VarDP=0|24|0;DP=25;QUALapprox=789;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:789,0,789:0,0,17,7 +chrX 2919701 . C . . END=2919811 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,487 +chrX 2919812 . TGTTGTTGAAA T, 890.01 . AS_QUALapprox=|900|0;AS_VarDP=0|20|0;DP=21;QUALapprox=900;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75600,21;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:900,0,900:0,0,11,9 +chrX 2919823 . C . . END=2919823 GT:DP:GQ:MIN_DP:PL 0:19:99:19:0,640 +chrX 2919824 . TC T, 890.01 . AS_QUALapprox=|900|0;AS_VarDP=0|20|0;DP=20;QUALapprox=900;RAW_GT_COUNT=0,0,1;RAW_MQandDP=72000,20;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:900,0,900:0,0,11,9 +chrX 2919826 . A . . END=2920982 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,532 +chrX 2920983 . T C, 1141.04 . AS_QUALapprox=|1151|0;AS_VarDP=0|36|0;DP=37;QUALapprox=1151;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133200,37;VarDP=36 GT:AD:DP:GQ:PL:SB 1:0,36,0:36:99:1151,0,1151:0,0,22,14 +chrX 2920984 . G . . END=2922781 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,645 +chrX 2922782 . A G, 883.04 . AS_QUALapprox=|893|0;AS_VarDP=0|27|0;DP=28;QUALapprox=893;RAW_GT_COUNT=0,0,1;RAW_MQandDP=99650,28;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:893,0,893:0,0,14,13 +chrX 2922783 . A . . END=2922841 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,744 +chrX 2922842 . CAAAAAAAAAAAAAAAAAAAAA C, 1007.01 . AS_QUALapprox=|1017|0;AS_VarDP=0|23|0;DP=32;QUALapprox=1017;RAW_GT_COUNT=0,0,1;RAW_MQandDP=114050,32;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:1017,0,1017:0,0,7,16 +chrX 2922864 . A . . END=2922972 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,700 +chrX 2922973 . CGTGAGGCACGGTACT C, 1566.01 . AS_QUALapprox=|1576|0;AS_VarDP=0|35|0;DP=37;QUALapprox=1576;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133200,37;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,35,0:35:99:1576,0,1576:0,0,19,16 +chrX 2922989 . G . . END=2925097 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,581 +chrX 2925098 . T C, 953.04 . AS_QUALapprox=|963|0;AS_VarDP=0|30|0;DP=31;QUALapprox=963;RAW_GT_COUNT=0,0,1;RAW_MQandDP=109764,31;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:963,0,963:0,0,12,18 +chrX 2925099 . G . . END=2927239 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,626 +chrX 2927240 . C CT, 758.01 . AS_QUALapprox=|768|0;AS_VarDP=0|28|0;DP=33;QUALapprox=768;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:768,0,768:0,0,12,16 +chrX 2927241 . T . . END=2928623 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,144 +chrX 2928624 . G C, 690.04 . AS_QUALapprox=|700|0;AS_VarDP=1|22|0;BaseQRankSum=2.406;DP=23;MQRankSum=0.000;QUALapprox=700;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;ReadPosRankSum=0.226;VarDP=23 GT:AD:DP:GQ:PL:SB 1:1,22,0:23:99:700,0,709:1,0,15,7 +chrX 2928625 . C . . END=2928975 GT:DP:GQ:MIN_DP:PL 0:37:99:37:0,400 +chrX 2928976 . T C, 1105.04 . AS_QUALapprox=|1115|0;AS_VarDP=0|33|0;DP=33;QUALapprox=1115;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1115,0,1115:0,0,14,19 +chrX 2928977 . C . . END=2943417 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,387 +chrX 2943418 . G C, 1270.04 . AS_QUALapprox=|1280|0;AS_VarDP=0|40|0;DP=41;QUALapprox=1280;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147600,41;VarDP=40 GT:AD:DP:GQ:PL:SB 1:0,40,0:40:99:1280,0,1280:0,0,23,17 +chrX 2943419 . T . . END=2945221 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,225 +chrX 2945222 . G A, 833.04 . AS_QUALapprox=|843|0;AS_VarDP=2|29|0;BaseQRankSum=1.746;DP=31;MQRankSum=0.000;QUALapprox=843;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;ReadPosRankSum=0.483;VarDP=31 GT:AD:DP:GQ:PL:SB 1:2,29,0:31:99:843,0,892:1,1,14,15 +chrX 2945223 . A . . END=2946321 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,793 +chrX 2946322 . C CT, 78.01 . AS_QUALapprox=|88|0;AS_VarDP=3|8|0;BaseQRankSum=1.097;DP=25;MQRankSum=-0.349;QUALapprox=88;RAW_GT_COUNT=0,0,1;RAW_MQandDP=88000,25;ReadPosRankSum=0.099;VarDP=11 GT:AD:DP:GQ:PL:SB 1:3,8,0:11:88:88,0,139:1,2,8,0 +chrX 2946323 . T . . END=2960254 GT:DP:GQ:MIN_DP:PL 0:30:85:30:0,85 +chrX 2960255 . T C, 609.04 . AS_QUALapprox=|619|0;AS_VarDP=0|19|0;DP=19;QUALapprox=619;RAW_GT_COUNT=0,0,1;RAW_MQandDP=42062,19;VarDP=19 GT:AD:DP:GQ:PL:SB 1:0,19,0:19:99:619,0,619:0,0,8,11 +chrX 2960256 . G . . END=2962852 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,352 +chrX 2962853 . T C, 893.04 . AS_QUALapprox=|903|0;AS_VarDP=0|28|0;DP=28;QUALapprox=903;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:903,0,903:0,0,19,9 +chrX 2962854 . G . . END=2963118 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,734 +chrX 2963119 . G A, 973.04 . AS_QUALapprox=|983|0;AS_VarDP=0|29|0;DP=29;QUALapprox=983;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:983,0,983:0,0,15,14 +chrX 2963120 . G . . END=2988812 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,342 +chrX 2988813 . C CA, 130.01 . AS_QUALapprox=|140|0;AS_VarDP=0|8|0;DP=18;QUALapprox=140;RAW_GT_COUNT=0,0,1;RAW_MQandDP=64800,18;VarDP=8 GT:AD:DP:GQ:PL:SB 1:0,8,0:8:99:140,0,140:0,0,3,5 +chrX 2988814 . A . . END=2996504 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,139 +chrX 2996505 . C CCTTTCTTTCTTT, 482.01 . AS_QUALapprox=|492|0;AS_VarDP=0|11|0;DP=20;QUALapprox=492;RAW_GT_COUNT=0,0,1;RAW_MQandDP=69941,20;VarDP=11 GT:AD:DP:GQ:PL:SB 1:0,11,0:11:99:492,0,494:0,0,5,6 +chrX 2996506 . C . . END=2998967 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,331 +chrX 2998968 . T TACAC, 704.01 . AS_QUALapprox=|714|0;AS_VarDP=0|18|0;DP=25;QUALapprox=714;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=18 GT:AD:DP:GQ:PL:SB 1:0,18,0:18:99:714,0,715:0,0,8,10 +chrX 2998969 . A . . END=3007246 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,313 +chrX 3007247 . TA T, 503.01 . AS_QUALapprox=|513|0;AS_VarDP=0|21|0;DP=34;QUALapprox=513;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:513,0,513:0,0,10,11 +chrX 3007249 . A . . END=3008448 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,611 +chrX 3008449 . TTTTC T, 531.01 . AS_QUALapprox=|541|0;AS_VarDP=0|12|0;DP=30;QUALapprox=541;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=12 GT:AD:DP:GQ:PL:SB 1:0,12,0:12:99:541,0,541:0,0,5,7 +chrX 3008454 . T . . END=3008740 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,606 +chrX 3008741 . GT G, 481.01 . AS_QUALapprox=|491|0;AS_VarDP=0|17|0;DP=23;QUALapprox=491;RAW_GT_COUNT=0,0,1;RAW_MQandDP=80224,23;VarDP=17 GT:AD:DP:GQ:PL:SB 1:0,17,0:17:99:491,0,491:0,0,5,12 +chrX 3008743 . T . . END=3009402 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,561 +chrX 3009403 . A G, 933.04 . AS_QUALapprox=|943|0;AS_VarDP=0|29|0;DP=29;QUALapprox=943;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:943,0,943:0,0,14,15 +chrX 3009404 . G . . END=3010513 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,838 +chrX 3010514 . T C, 1012.04 . AS_QUALapprox=|1022|0;AS_VarDP=0|33|0;DP=33;QUALapprox=1022;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1022,0,1022:0,0,19,14 +chrX 3010515 . G . . END=3011251 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,675 +chrX 3011252 . C CT, 599.01 . AS_QUALapprox=|609|0;AS_VarDP=0|24|0;DP=30;QUALapprox=609;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:609,0,609:0,0,13,11 +chrX 3011253 . T . . END=3012319 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,585 +chrX 3012320 . G T, 720.04 . AS_QUALapprox=|730|0;AS_VarDP=0|22|0;DP=22;QUALapprox=730;RAW_GT_COUNT=0,0,1;RAW_MQandDP=77834,22;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:730,0,730:0,0,6,16 +chrX 3012321 . T . . END=3012539 GT:DP:GQ:MIN_DP:PL 0:19:99:19:0,225 +chrX 3012540 . CAAA C, 57.01 . AS_QUALapprox=|67|0;AS_VarDP=2|3|0;BaseQRankSum=-0.319;DP=14;MQRankSum=0.842;QUALapprox=67;RAW_GT_COUNT=0,0,1;RAW_MQandDP=40066,14;ReadPosRankSum=-0.319;VarDP=5 GT:AD:DP:GQ:PL:SB 1:2,3,0:5:67:67,0,115:1,1,2,1 +chrX 3012544 . A . . END=3012602 GT:DP:GQ:MIN_DP:PL 0:11:99:11:0,225 +chrX 3012603 . T TATATATATATA, 845.01 . AS_QUALapprox=|855|0;AS_VarDP=0|19|0;DP=22;QUALapprox=855;RAW_GT_COUNT=0,0,1;RAW_MQandDP=72867,22;VarDP=19 GT:AD:DP:GQ:PL:SB 1:0,19,0:19:99:855,0,855:0,0,15,4 +chrX 3012604 . A . . END=3012609 GT:DP:GQ:MIN_DP:PL 0:21:99:21:0,640 +chrX 3012610 . G A, 890.04 . AS_QUALapprox=|900|0;AS_VarDP=0|20|0;DP=20;QUALapprox=900;RAW_GT_COUNT=0,0,1;RAW_MQandDP=71425,20;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:900,0,900:0,0,16,4 +chrX 3012611 . T . . END=3012613 GT:DP:GQ:MIN_DP:PL 0:20:99:20:0,665 +chrX 3012614 . G A, 928.04 . AS_QUALapprox=|938|0;AS_VarDP=0|21|0;DP=21;QUALapprox=938;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75025,21;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:938,0,938:0,0,16,5 +chrX 3012615 . T . . END=3012620 GT:DP:GQ:MIN_DP:PL 0:22:99:22:0,669 +chrX 3012621 . TAC T, 961.01 . AS_QUALapprox=|971|0;AS_VarDP=0|22|0;DP=22;QUALapprox=971;RAW_GT_COUNT=0,0,1;RAW_MQandDP=78625,22;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:971,0,971:0,0,17,5 +chrX 3012624 . A . . END=3013436 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,690 +chrX 3013437 . C G, 1056.04 . AS_QUALapprox=|1066|0;AS_VarDP=0|33|0;DP=34;QUALapprox=1066;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1066,0,1066:0,0,15,18 +chrX 3013438 . G . . END=3013502 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,844 +chrX 3013503 . G A, 968.04 . AS_QUALapprox=|978|0;AS_VarDP=0|30|0;DP=30;QUALapprox=978;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:978,0,978:0,0,19,11 +chrX 3013504 . A . . END=3013550 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,616 +chrX 3013551 . C T, 651.04 . AS_QUALapprox=|661|0;AS_VarDP=0|19|0;DP=20;QUALapprox=661;RAW_GT_COUNT=0,0,1;RAW_MQandDP=72000,20;VarDP=19 GT:AD:DP:GQ:PL:SB 1:0,19,0:19:99:661,0,661:0,0,15,4 +chrX 3013552 . T . . END=3016389 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,178 +chrX 3016390 . T C, 555.04 . AS_QUALapprox=|565|0;AS_VarDP=0|19|0;DP=19;QUALapprox=565;RAW_GT_COUNT=0,0,1;RAW_MQandDP=68400,19;VarDP=19 GT:AD:DP:GQ:PL:SB 1:0,19,0:19:99:565,0,565:0,0,9,10 +chrX 3016391 . G . . END=3016673 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,575 +chrX 3016674 . C T, 680.04 . AS_QUALapprox=|690|0;AS_VarDP=1|22|0;BaseQRankSum=-0.344;DP=24;MQRankSum=0.000;QUALapprox=690;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;ReadPosRankSum=-1.132;VarDP=23 GT:AD:DP:GQ:PL:SB 1:1,22,0:23:99:690,0,725:1,0,11,11 +chrX 3016675 . A . . END=3016898 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,581 +chrX 3016899 . G A, 941.04 . AS_QUALapprox=|951|0;AS_VarDP=0|28|0;DP=30;QUALapprox=951;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:951,0,951:0,0,13,15 +chrX 3016900 . G . . END=3017626 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,670 +chrX 3017627 . G A, 874.04 . AS_QUALapprox=|884|0;AS_VarDP=0|26|0;DP=27;QUALapprox=884;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:884,0,884:0,0,12,14 +chrX 3017628 . G . . END=3019263 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,571 +chrX 3019264 . CAA C, 439.01 . AS_QUALapprox=|449|0;AS_VarDP=3|16|0;BaseQRankSum=2.272;DP=30;MQRankSum=0.000;QUALapprox=449;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;ReadPosRankSum=-0.727;VarDP=19 GT:AD:DP:GQ:PL:SB 1:3,16,0:19:99:449,0,486:3,0,9,7 +chrX 3019267 . A . . END=3019706 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,551 +chrX 3019707 . T C, 1220.04 . AS_QUALapprox=|1230|0;AS_VarDP=0|38|0;DP=39;QUALapprox=1230;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140400,39;VarDP=38 GT:AD:DP:GQ:PL:SB 1:0,38,0:38:99:1230,0,1230:0,0,17,21 +chrX 3019708 . G . . END=3020225 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,645 +chrX 3020226 . G C, 591.04 . AS_QUALapprox=|601|0;AS_VarDP=0|18|0;DP=19;QUALapprox=601;RAW_GT_COUNT=0,0,1;RAW_MQandDP=68400,19;VarDP=18 GT:AD:DP:GQ:PL:SB 1:0,18,0:18:99:601,0,601:0,0,10,8 +chrX 3020227 . G . . END=3020273 GT:DP:GQ:MIN_DP:PL 0:15:99:15:0,315 +chrX 3020274 . CA C, 10.01 . AS_QUALapprox=|20|0;AS_VarDP=2|3|0;BaseQRankSum=-0.319;DP=26;MQRankSum=0.842;QUALapprox=20;RAW_GT_COUNT=0,0,1;RAW_MQandDP=87600,26;ReadPosRankSum=-1.150;VarDP=5 GT:AD:DP:GQ:PL:SB 1:2,3,0:5:20:20,0,56:0,2,2,1 +chrX 3020276 . A . . END=3020587 GT:DP:GQ:MIN_DP:PL 0:21:99:21:0,243 +chrX 3020588 . C CA, 292.01 . AS_QUALapprox=|302|0;AS_VarDP=0|17|0;DP=23;QUALapprox=302;RAW_GT_COUNT=0,0,1;RAW_MQandDP=76345,23;VarDP=17 GT:AD:DP:GQ:PL:SB 1:0,17,0:17:99:302,0,303:0,0,8,9 +chrX 3020589 . A . . END=3020898 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,769 +chrX 3020899 . T C, 843.04 . AS_QUALapprox=|853|0;AS_VarDP=0|28|0;DP=30;QUALapprox=853;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:853,0,853:0,0,14,14 +chrX 3020900 . C . . END=3021706 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,680 +chrX 3021707 . C CT, 595.01 . AS_QUALapprox=|605|0;AS_VarDP=0|28|0;DP=33;QUALapprox=605;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:605,0,605:0,0,16,12 +chrX 3021708 . T . . END=3021880 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,604 +chrX 3021881 . T TTGTG,TTGTGTG, 816.01 . AS_QUALapprox=|826|447|0;AS_VarDP=0|14|2|0;DP=27;QUALapprox=826;RAW_GT_COUNT=0,0,1;RAW_MQandDP=96625,27;VarDP=16 GT:AD:DP:GQ:PL:SB 1:0,14,2,0:16:99:826,0,379,625:0,0,8,8 +chrX 3021882 . T . . END=3024067 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,640 +chrX 3024068 . T C, 995.04 . AS_QUALapprox=|1005|0;AS_VarDP=0|31|0;DP=31;QUALapprox=1005;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1005,0,1005:0,0,15,16 +chrX 3024069 . T . . END=3025545 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,442 +chrX 3025546 . C CTA, 805.01 . AS_QUALapprox=|815|0;AS_VarDP=0|21|0;DP=23;QUALapprox=815;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:815,0,815:0,0,11,10 +chrX 3025547 . T . . END=3026495 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,640 +chrX 3026496 . A C, 1072.04 . AS_QUALapprox=|1082|0;AS_VarDP=1|32|0;BaseQRankSum=3.475;DP=33;MQRankSum=0.000;QUALapprox=1082;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;ReadPosRankSum=0.158;VarDP=33 GT:AD:DP:GQ:PL:SB 1:1,32,0:33:99:1082,0,1091:1,0,11,21 +chrX 3026497 . A . . END=3029732 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,496 +chrX 3029733 . G T, 844.04 . AS_QUALapprox=|854|0;AS_VarDP=0|27|0;DP=29;QUALapprox=854;RAW_GT_COUNT=0,0,1;RAW_MQandDP=102041,29;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:854,0,854:0,0,13,14 +chrX 3029734 . T . . END=3030906 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,640 +chrX 3030907 . C T, 923.04 . AS_QUALapprox=|933|0;AS_VarDP=0|28|0;DP=28;QUALapprox=933;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:933,0,933:0,0,18,10 +chrX 3030908 . A . . END=3031131 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,815 +chrX 3031132 . CAAA C, 1129.01 . AS_QUALapprox=|1139|0;AS_VarDP=0|26|0;DP=30;QUALapprox=1139;RAW_GT_COUNT=0,0,1;RAW_MQandDP=106000,30;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:1139,0,1139:0,0,14,12 +chrX 3031136 . A . . END=3032164 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,706 +chrX 3032165 . A T, 1119.04 . AS_QUALapprox=|1129|0;AS_VarDP=0|26|0;DP=27;QUALapprox=1129;RAW_GT_COUNT=0,0,1;RAW_MQandDP=96625,27;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:1129,0,1129:0,0,10,16 +chrX 3032166 . T . . END=3032175 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,749 +chrX 3032176 . C T, 1118.04 . AS_QUALapprox=|1128|0;AS_VarDP=0|26|0;DP=26;QUALapprox=1128;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93025,26;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:1128,0,1128:0,0,9,17 +chrX 3032177 . G . . END=3032919 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,461 +chrX 3032920 . A G, 1166.04 . AS_QUALapprox=|1176|0;AS_VarDP=0|36|0;DP=37;QUALapprox=1176;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133200,37;VarDP=36 GT:AD:DP:GQ:PL:SB 1:0,36,0:36:99:1176,0,1176:0,0,17,19 +chrX 3032921 . A . . END=3032956 GT:DP:GQ:MIN_DP:PL 0:37:99:37:0,1157 +chrX 3032957 . C T, 1281.04 . AS_QUALapprox=|1291|0;AS_VarDP=1|39|0;BaseQRankSum=2.942;DP=42;MQRankSum=0.000;QUALapprox=1291;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151200,42;ReadPosRankSum=0.953;VarDP=40 GT:AD:DP:GQ:PL:SB 1:1,39,0:40:99:1291,0,1300:1,0,19,20 +chrX 3032958 . G . . END=3033392 GT:DP:GQ:MIN_DP:PL 0:37:99:37:0,929 +chrX 3033393 . C G, 1026.04 . AS_QUALapprox=|1036|0;AS_VarDP=1|35|0;BaseQRankSum=-0.552;DP=36;MQRankSum=0.000;QUALapprox=1036;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129600,36;ReadPosRankSum=0.000;VarDP=36 GT:AD:DP:GQ:PL:SB 1:1,35,0:36:99:1036,0,1071:0,1,16,19 +chrX 3033394 . G . . END=3033889 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,684 +chrX 3033890 . G A, 913.04 . AS_QUALapprox=|923|0;AS_VarDP=0|28|0;DP=29;QUALapprox=923;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:923,0,923:0,0,19,9 +chrX 3033891 . A . . END=3035368 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,778 +chrX 3035369 . A C, 965.04 . AS_QUALapprox=|975|0;AS_VarDP=0|33|0;DP=35;QUALapprox=975;RAW_GT_COUNT=0,0,1;RAW_MQandDP=124336,35;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:975,0,975:0,0,12,21 +chrX 3035370 . G . . END=3035463 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,720 +chrX 3035464 . T C, 790.04 . AS_QUALapprox=|800|0;AS_VarDP=0|23|0;DP=23;QUALapprox=800;RAW_GT_COUNT=0,0,1;RAW_MQandDP=79771,23;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:800,0,800:0,0,14,9 +chrX 3035465 . T . . END=3035481 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,780 +chrX 3035482 . T TTGTGTGTGTGTGTG, 1159.01 . AS_QUALapprox=|1169|0;AS_VarDP=0|26|0;DP=28;QUALapprox=1169;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97771,28;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:1169,0,1170:0,0,18,8 +chrX 3035483 . T . . END=3035500 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,675 +chrX 3035501 . G GAGAGAGAGAGAGA, 1250.01 . AS_QUALapprox=|1260|0;AS_VarDP=0|28|0;DP=28;QUALapprox=1260;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97771,28;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:1260,0,1260:0,0,19,9 +chrX 3035502 . G . . END=3035502 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,759 +chrX 3035503 . G A, 1250.04 . AS_QUALapprox=|1260|0;AS_VarDP=0|28|0;DP=28;QUALapprox=1260;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97771,28;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:1260,0,1260:0,0,19,9 +chrX 3035504 . G . . END=3035504 GT:DP:GQ:MIN_DP:PL 0:22:99:22:0,735 +chrX 3035505 . G A, 1069.04 . AS_QUALapprox=|1079|0;AS_VarDP=0|24|0;DP=26;QUALapprox=1079;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90571,26;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:1079,0,1080:0,0,17,7 +chrX 3035506 . G . . END=3035541 GT:DP:GQ:MIN_DP:PL 0:22:99:22:0,604 +chrX 3035542 . G C, 739.04 . AS_QUALapprox=|749|0;AS_VarDP=0|23|0;DP=23;QUALapprox=749;RAW_GT_COUNT=0,0,1;RAW_MQandDP=79771,23;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:749,0,749:0,0,13,10 +chrX 3035543 . A . . END=3035731 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,491 +chrX 3035732 . C T, 1053.04 . AS_QUALapprox=|1063|0;AS_VarDP=1|26|0;BaseQRankSum=-0.313;DP=27;MQRankSum=0.000;QUALapprox=1063;RAW_GT_COUNT=0,0,1;RAW_MQandDP=96516,27;ReadPosRankSum=-0.578;VarDP=27 GT:AD:DP:GQ:PL:SB 1:1,26,0:27:99:1063,0,1108:1,0,11,15 +chrX 3035733 . G . . END=3035756 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,739 +chrX 3035757 . G C, 914.04 . AS_QUALapprox=|924|0;AS_VarDP=1|22|0;BaseQRankSum=1.673;DP=23;MQRankSum=0.000;QUALapprox=924;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;ReadPosRankSum=-1.434;VarDP=23 GT:AD:DP:GQ:PL:SB 1:1,22,0:23:99:924,0,969:1,0,12,10 +chrX 3035758 . C . . END=3036528 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,575 +chrX 3036529 . T A, 709.04 . AS_QUALapprox=|719|0;AS_VarDP=0|23|0;DP=23;QUALapprox=719;RAW_GT_COUNT=0,0,1;RAW_MQandDP=78205,23;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:719,0,719:0,0,10,13 +chrX 3036530 . C . . END=3036647 GT:DP:GQ:MIN_DP:PL 0:17:99:17:0,357 +chrX 3036648 . T . . END=3036648 GT:DP:GQ:MIN_DP:PL 0:12:0:12:0,0 +chrX 3036649 . T . . END=3036666 GT:DP:GQ:MIN_DP:PL 0:12:99:12:0,348 +chrX 3036667 . T . . END=3036668 GT:DP:GQ:MIN_DP:PL 0:9:0:9:0,0 +chrX 3036669 . A . . END=3036680 GT:DP:GQ:MIN_DP:PL 0:8:99:8:0,278 +chrX 3036681 . T . . END=3036683 GT:DP:GQ:MIN_DP:PL 0:8:0:8:0,0 +chrX 3036684 . T . . END=3036699 GT:DP:GQ:MIN_DP:PL 0:7:99:7:0,209 +chrX 3036700 . T . . END=3036700 GT:DP:GQ:MIN_DP:PL 0:6:0:6:0,0 +chrX 3036701 . A . . END=3036701 GT:DP:GQ:MIN_DP:PL 0:6:99:6:0,209 +chrX 3036702 . T . . END=3036702 GT:DP:GQ:MIN_DP:PL 0:6:0:6:0,0 +chrX 3036703 . A . . END=3036705 GT:DP:GQ:MIN_DP:PL 0:6:99:6:0,209 +chrX 3036706 . A . . END=3036706 GT:DP:GQ:MIN_DP:PL 0:6:0:6:0,0 +chrX 3036707 . T . . END=3036717 GT:DP:GQ:MIN_DP:PL 0:6:99:6:0,135 +chrX 3036718 . T . . END=3036720 GT:DP:GQ:MIN_DP:PL 0:5:0:5:0,0 +chrX 3036721 . T . . END=3036739 GT:DP:GQ:MIN_DP:PL 0:3:45:3:0,45 +chrX 3036740 . A . . END=3036951 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3036952 . A . . END=3036959 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3036960 . T . . END=3036960 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3036961 . A . . END=3036968 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3036969 . T . . END=3036969 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3036970 . A . . END=3036976 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3036977 . T . . END=3036977 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3036978 . A . . END=3036981 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3036982 . T . . END=3036982 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3036983 . A . . END=3036985 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3036986 . T . . END=3036998 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3036999 . T . . END=3037030 GT:DP:GQ:MIN_DP:PL 0:2:35:1:0,35 +chrX 3037031 . A . . END=3037031 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 3037032 . T . . END=3037034 GT:DP:GQ:MIN_DP:PL 0:2:45:2:0,45 +chrX 3037035 . A . . END=3037044 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 3037045 . T . . END=3037078 GT:DP:GQ:MIN_DP:PL 0:3:35:2:0,35 +chrX 3037079 . A . . END=3037079 GT:DP:GQ:MIN_DP:PL 0:4:0:4:0,0 +chrX 3037080 . T . . END=3037084 GT:DP:GQ:MIN_DP:PL 0:4:70:4:0,70 +chrX 3037085 . A . . END=3037087 GT:DP:GQ:MIN_DP:PL 0:4:0:4:0,0 +chrX 3037088 . A . . END=3037144 GT:DP:GQ:MIN_DP:PL 0:3:35:3:0,35 +chrX 3037145 . A . . END=3037160 GT:DP:GQ:MIN_DP:PL 0:4:0:4:0,0 +chrX 3037161 . A . . END=3037184 GT:DP:GQ:MIN_DP:PL 0:10:99:10:0,139 +chrX 3037185 . T . . END=3037187 GT:DP:GQ:MIN_DP:PL 0:11:0:11:0,0 +chrX 3037188 . A . . END=3039240 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,193 +chrX 3039241 . A G, 683.04 . AS_QUALapprox=|693|0;AS_VarDP=0|24|0;DP=24;QUALapprox=693;RAW_GT_COUNT=0,0,1;RAW_MQandDP=71926,24;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:693,0,693:0,0,10,14 +chrX 3039242 . T . . END=3039260 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,675 +chrX 3039261 . G GT, 388.01 . AS_QUALapprox=|398|0;AS_VarDP=0|18|0;DP=25;QUALapprox=398;RAW_GT_COUNT=0,0,1;RAW_MQandDP=83526,25;VarDP=18 GT:AD:DP:GQ:PL:SB 1:0,18,0:18:99:398,0,399:0,0,10,8 +chrX 3039262 . T . . END=3040031 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,487 +chrX 3040032 . A G, 1281.04 . AS_QUALapprox=|1291|0;AS_VarDP=0|30|0;DP=32;QUALapprox=1291;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:1291,0,1291:0,0,14,16 +chrX 3040033 . T . . END=3040037 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,939 +chrX 3040038 . C T, 1212.04 . AS_QUALapprox=|1222|0;AS_VarDP=0|28|0;DP=28;QUALapprox=1222;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:1222,0,1222:0,0,12,16 +chrX 3040039 . A . . END=3040258 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,684 +chrX 3040259 . C T, 665.04 . AS_QUALapprox=|675|0;AS_VarDP=0|21|0;DP=23;QUALapprox=675;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:675,0,675:0,0,11,10 +chrX 3040260 . A . . END=3041298 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,541 +chrX 3041299 . C CT, 504.01 . AS_QUALapprox=|514|0;AS_VarDP=0|23|0;DP=34;QUALapprox=514;RAW_GT_COUNT=0,0,1;RAW_MQandDP=120400,34;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:514,0,515:0,0,14,9 +chrX 3041300 . T . . END=3041819 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,477 +chrX 3041820 . C T, 1040.04 . AS_QUALapprox=|1050|0;AS_VarDP=0|32|0;DP=35;QUALapprox=1050;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1050,0,1050:0,0,18,14 +chrX 3041821 . T . . END=3043657 GT:DP:GQ:MIN_DP:PL 0:37:99:37:0,567 +chrX 3043658 . T C, 1137.04 . AS_QUALapprox=|1147|0;AS_VarDP=0|35|0;DP=36;QUALapprox=1147;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129600,36;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,35,0:35:99:1147,0,1147:0,0,18,17 +chrX 3043659 . T . . END=3043850 GT:DP:GQ:MIN_DP:PL 0:37:99:37:0,849 +chrX 3043851 . G T, 839.04 . AS_QUALapprox=|849|0;AS_VarDP=0|26|0;DP=26;QUALapprox=849;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:849,0,849:0,0,12,14 +chrX 3043852 . G . . END=3044069 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,741 +chrX 3044070 . T C, 1081.04 . AS_QUALapprox=|1091|0;AS_VarDP=0|34|0;DP=34;QUALapprox=1091;RAW_GT_COUNT=0,0,1;RAW_MQandDP=121825,34;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1091,0,1091:0,0,15,19 +chrX 3044071 . G . . END=3044415 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,585 +chrX 3044416 . T C, 739.04 . AS_QUALapprox=|749|0;AS_VarDP=0|23|0;DP=25;QUALapprox=749;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:749,0,749:0,0,11,12 +chrX 3044417 . G . . END=3044665 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,734 +chrX 3044666 . T A, 864.04 . AS_QUALapprox=|874|0;AS_VarDP=0|26|0;DP=30;QUALapprox=874;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:874,0,874:0,0,12,14 +chrX 3044667 . G . . END=3045641 GT:DP:GQ:MIN_DP:PL 0:37:99:37:0,765 +chrX 3045642 . A G, 917.04 . AS_QUALapprox=|927|0;AS_VarDP=0|30|0;DP=32;QUALapprox=927;RAW_GT_COUNT=0,0,1;RAW_MQandDP=109326,32;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:927,0,927:0,0,13,17 +chrX 3045643 . C . . END=3045711 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,928 +chrX 3045712 . C T, 1430.04 . AS_QUALapprox=|1440|0;AS_VarDP=0|32|0;DP=33;QUALapprox=1440;RAW_GT_COUNT=0,0,1;RAW_MQandDP=116425,33;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1440,0,1440:0,0,14,18 +chrX 3045713 . A G, 1464.04 . AS_QUALapprox=|1474|0;AS_VarDP=0|33|0;DP=34;QUALapprox=1474;RAW_GT_COUNT=0,0,1;RAW_MQandDP=120025,34;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1474,0,1474:0,0,14,19 +chrX 3045714 . C . . END=3045715 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,993 +chrX 3045716 . T C, 1452.04 . AS_QUALapprox=|1462|0;AS_VarDP=0|33|0;DP=35;QUALapprox=1462;RAW_GT_COUNT=0,0,1;RAW_MQandDP=123625,35;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1462,0,1462:0,0,15,18 +chrX 3045717 . G . . END=3045943 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,909 +chrX 3045944 . G A, 1087.04 . AS_QUALapprox=|1097|0;AS_VarDP=0|33|0;DP=35;QUALapprox=1097;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1097,0,1097:0,0,23,10 +chrX 3045945 . T . . END=3046132 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,809 +chrX 3046133 . G A, 803.04 . AS_QUALapprox=|813|0;AS_VarDP=0|25|0;DP=27;QUALapprox=813;RAW_GT_COUNT=0,0,1;RAW_MQandDP=96625,27;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:813,0,813:0,0,9,16 +chrX 3046134 . C . . END=3047040 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,436 +chrX 3047041 . A G, 808.04 . AS_QUALapprox=|818|0;AS_VarDP=0|26|0;DP=27;QUALapprox=818;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:818,0,818:0,0,16,10 +chrX 3047042 . A . . END=3047124 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,768 +chrX 3047125 . T C, 996.04 . AS_QUALapprox=|1006|0;AS_VarDP=0|32|0;DP=34;QUALapprox=1006;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1006,0,1006:0,0,18,14 +chrX 3047126 . G . . END=3047475 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,678 +chrX 3047476 . A AG, 1598.01 . AS_QUALapprox=|1608|0;AS_VarDP=0|36|0;DP=38;QUALapprox=1608;RAW_GT_COUNT=0,0,1;RAW_MQandDP=135735,38;VarDP=36 GT:AD:DP:GQ:PL:SB 1:0,36,0:36:99:1608,0,1608:0,0,17,19 +chrX 3047477 . C . . END=3047480 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,1016 +chrX 3047481 . T G, 1603.04 . AS_QUALapprox=|1613|0;AS_VarDP=0|36|0;DP=36;QUALapprox=1613;RAW_GT_COUNT=0,0,1;RAW_MQandDP=128535,36;VarDP=36 GT:AD:DP:GQ:PL:SB 1:0,36,0:36:99:1613,0,1613:0,0,16,20 +chrX 3047482 . A . . END=3047484 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,1006 +chrX 3047485 . C T, 1630.04 . AS_QUALapprox=|1640|0;AS_VarDP=0|37|0;DP=38;QUALapprox=1640;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133899,38;VarDP=37 GT:AD:DP:GQ:PL:SB 1:0,37,0:37:99:1640,0,1640:0,0,16,21 +chrX 3047486 . T . . END=3047839 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,551 +chrX 3047840 . G A, 1044.04 . AS_QUALapprox=|1054|0;AS_VarDP=0|24|0;DP=25;QUALapprox=1054;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:1054,0,1054:0,0,13,11 +chrX 3047841 . A . . END=3047843 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,785 +chrX 3047844 . T C, 1044.04 . AS_QUALapprox=|1054|0;AS_VarDP=0|24|0;DP=24;QUALapprox=1054;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:1054,0,1054:0,0,13,11 +chrX 3047845 . A . . END=3047904 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,467 +chrX 3047905 . T C, 481.04 . AS_QUALapprox=|491|0;AS_VarDP=0|15|0;DP=16;QUALapprox=491;RAW_GT_COUNT=0,0,1;RAW_MQandDP=57600,16;VarDP=15 GT:AD:DP:GQ:PL:SB 1:0,15,0:15:99:491,0,491:0,0,11,4 +chrX 3047906 . G . . END=3047980 GT:DP:GQ:MIN_DP:PL 0:12:99:12:0,348 +chrX 3047981 . A G, 457.04 . AS_QUALapprox=|467|0;AS_VarDP=0|14|0;DP=16;QUALapprox=467;RAW_GT_COUNT=0,0,1;RAW_MQandDP=57600,16;VarDP=14 GT:AD:DP:GQ:PL:SB 1:0,14,0:14:99:467,0,467:0,0,8,6 +chrX 3047982 . A . . END=3048179 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,442 +chrX 3048180 . C T, 889.04 . AS_QUALapprox=|899|0;AS_VarDP=0|27|0;DP=31;QUALapprox=899;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:899,0,899:0,0,15,12 +chrX 3048181 . G . . END=3048207 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,808 +chrX 3048208 . T A, 874.04 . AS_QUALapprox=|884|0;AS_VarDP=0|28|0;DP=30;QUALapprox=884;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:884,0,884:0,0,15,13 +chrX 3048209 . C . . END=3048440 GT:DP:GQ:MIN_DP:PL 0:17:99:17:0,413 +chrX 3048441 . T C, 955.04 . AS_QUALapprox=|965|0;AS_VarDP=1|31|0;BaseQRankSum=2.215;DP=33;MQRankSum=0.000;QUALapprox=965;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;ReadPosRankSum=-0.217;VarDP=32 GT:AD:DP:GQ:PL:SB 1:1,31,0:32:99:965,0,975:0,1,17,14 +chrX 3048442 . C . . END=3048964 GT:DP:GQ:MIN_DP:PL 0:38:99:38:0,859 +chrX 3048965 . T A, 1137.04 . AS_QUALapprox=|1147|0;AS_VarDP=0|33|0;DP=33;QUALapprox=1147;RAW_GT_COUNT=0,0,1;RAW_MQandDP=117316,33;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1147,0,1147:0,0,16,17 +chrX 3048966 . T . . END=3049014 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,929 +chrX 3049015 . A G, 1186.04 . AS_QUALapprox=|1196|0;AS_VarDP=0|36|0;DP=37;QUALapprox=1196;RAW_GT_COUNT=0,0,1;RAW_MQandDP=130325,37;VarDP=36 GT:AD:DP:GQ:PL:SB 1:0,36,0:36:99:1196,0,1196:0,0,17,19 +chrX 3049016 . G . . END=3049095 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,1003 +chrX 3049096 . G A, 1107.04 . AS_QUALapprox=|1117|0;AS_VarDP=0|34|0;DP=34;QUALapprox=1117;RAW_GT_COUNT=0,0,1;RAW_MQandDP=121009,34;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1117,0,1117:0,0,17,17 +chrX 3049097 . T . . END=3049134 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,982 +chrX 3049135 . A G, 1070.04 . AS_QUALapprox=|1080|0;AS_VarDP=0|34|0;DP=36;QUALapprox=1080;RAW_GT_COUNT=0,0,1;RAW_MQandDP=128209,36;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1080,0,1080:0,0,15,19 +chrX 3049136 . T . . END=3049658 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,471 +chrX 3049659 . A G, 769.04 . AS_QUALapprox=|779|0;AS_VarDP=0|24|0;DP=24;QUALapprox=779;RAW_GT_COUNT=0,0,1;RAW_MQandDP=83572,24;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:779,0,779:0,0,15,9 +chrX 3049660 . T . . END=3049928 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,606 +chrX 3049929 . T C, 625.04 . AS_QUALapprox=|635|0;AS_VarDP=0|20|0;DP=23;QUALapprox=635;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82225,23;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:635,0,635:0,0,12,8 +chrX 3049930 . G . . END=3050068 GT:DP:GQ:MIN_DP:PL 0:21:99:21:0,541 +chrX 3050069 . G C, 675.04 . AS_QUALapprox=|685|0;AS_VarDP=0|20|0;DP=21;QUALapprox=685;RAW_GT_COUNT=0,0,1;RAW_MQandDP=73296,21;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:685,0,685:0,0,4,16 +chrX 3050070 . C . . END=3050390 GT:DP:GQ:MIN_DP:PL 0:21:99:21:0,422 +chrX 3050391 . G A, 744.04 . AS_QUALapprox=|754|0;AS_VarDP=0|24|0;DP=25;QUALapprox=754;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:754,0,754:0,0,17,7 +chrX 3050392 . A . . END=3050606 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,549 +chrX 3050607 . T C, 953.04 . AS_QUALapprox=|963|0;AS_VarDP=0|29|0;DP=30;QUALapprox=963;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90035,30;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:963,0,963:0,0,16,13 +chrX 3050608 . G . . END=3050873 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,768 +chrX 3050874 . G T, 1191.04 . AS_QUALapprox=|1201|0;AS_VarDP=0|36|0;DP=40;QUALapprox=1201;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140884,40;VarDP=36 GT:AD:DP:GQ:PL:SB 1:0,36,0:36:99:1201,0,1201:0,0,18,18 +chrX 3050875 . T . . END=3050916 GT:DP:GQ:MIN_DP:PL 0:38:99:38:0,1161 +chrX 3050917 . C T, 1216.04 . AS_QUALapprox=|1226|0;AS_VarDP=0|38|0;DP=39;QUALapprox=1226;RAW_GT_COUNT=0,0,1;RAW_MQandDP=137284,39;VarDP=38 GT:AD:DP:GQ:PL:SB 1:0,38,0:38:99:1226,0,1226:0,0,18,20 +chrX 3050918 . C . . END=3052689 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,416 +chrX 3052690 . CA C, 355.01 . AS_QUALapprox=|365|0;AS_VarDP=0|15|0;DP=18;QUALapprox=365;RAW_GT_COUNT=0,0,1;RAW_MQandDP=64800,18;VarDP=15 GT:AD:DP:GQ:PL:SB 1:0,15,0:15:99:365,0,365:0,0,9,6 +chrX 3052692 . A . . END=3053409 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,477 +chrX 3053410 . A C, 853.04 . AS_QUALapprox=|863|0;AS_VarDP=0|26|0;DP=27;QUALapprox=863;RAW_GT_COUNT=0,0,1;RAW_MQandDP=95449,27;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:863,0,863:0,0,10,16 +chrX 3053411 . C . . END=3053638 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,729 +chrX 3053639 . C T, 947.04 . AS_QUALapprox=|957|0;AS_VarDP=0|30|0;DP=31;QUALapprox=957;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:957,0,957:0,0,18,12 +chrX 3053640 . G . . END=3053757 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,734 +chrX 3053758 . A AT, 332.01 . AS_QUALapprox=|342|0;AS_VarDP=0|17|0;DP=26;QUALapprox=342;RAW_GT_COUNT=0,0,1;RAW_MQandDP=91025,26;VarDP=17 GT:AD:DP:GQ:PL:SB 1:0,17,0:17:99:342,0,342:0,0,6,11 +chrX 3053759 . T . . END=3061627 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,426 +chrX 3061628 . A C, 718.04 . AS_QUALapprox=|728|0;AS_VarDP=0|23|0;DP=25;QUALapprox=728;RAW_GT_COUNT=0,0,1;RAW_MQandDP=88081,25;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:728,0,728:0,0,10,13 +chrX 3061629 . A . . END=3066911 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,377 +chrX 3066912 . CT C, 345.01 . AS_QUALapprox=|355|0;AS_VarDP=2|16|0;BaseQRankSum=-0.678;DP=24;MQRankSum=0.000;QUALapprox=355;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;ReadPosRankSum=-0.705;VarDP=18 GT:AD:DP:GQ:PL:SB 1:2,16,0:18:99:355,0,394:2,0,4,12 +chrX 3066914 . T . . END=3067415 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,426 +chrX 3067416 . C T, 804.04 . AS_QUALapprox=|814|0;AS_VarDP=0|25|0;DP=27;QUALapprox=814;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:814,0,814:0,0,13,12 +chrX 3067417 . A . . END=3070367 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,551 +chrX 3070368 . T C, 784.04 . AS_QUALapprox=|794|0;AS_VarDP=0|25|0;DP=28;QUALapprox=794;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:794,0,794:0,0,11,14 +chrX 3070369 . G . . END=3070589 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,729 +chrX 3070590 . A T, 1077.04 . AS_QUALapprox=|1087|0;AS_VarDP=0|33|0;DP=33;QUALapprox=1087;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1087,0,1087:0,0,19,14 +chrX 3070591 . T . . END=3070937 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,681 +chrX 3070938 . GGT G, 746.01 . AS_QUALapprox=|756|0;AS_VarDP=0|24|0;DP=34;QUALapprox=756;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:756,0,756:0,0,13,11 +chrX 3070941 . G . . END=3070993 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,856 +chrX 3070994 . GGATA G, 1025.01 . AS_QUALapprox=|1035|0;AS_VarDP=0|23|0;DP=28;QUALapprox=1035;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:1035,0,1035:0,0,12,11 +chrX 3070999 . G . . END=3075487 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,452 +chrX 3075488 . G GTC, 662.01 . AS_QUALapprox=|672|0;AS_VarDP=0|16|0;DP=17;QUALapprox=672;RAW_GT_COUNT=0,0,1;RAW_MQandDP=61200,17;VarDP=16 GT:AD:DP:GQ:PL:SB 1:0,16,0:16:99:672,0,672:0,0,10,6 +chrX 3075489 . T . . END=3075740 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,357 +chrX 3075741 . G T, 707.04 . AS_QUALapprox=|717|0;AS_VarDP=0|21|0;DP=28;QUALapprox=717;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:717,0,876:0,0,13,8 +chrX 3075742 . A . . END=3075896 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,297 +chrX 3075897 . CTCTG C, 584.01 . AS_QUALapprox=|594|0;AS_VarDP=3|23|0;BaseQRankSum=-0.934;DP=29;MQRankSum=0.000;QUALapprox=594;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;ReadPosRankSum=1.004;VarDP=26 GT:AD:DP:GQ:PL:SB 1:3,23,0:26:99:594,0,648:1,2,8,15 +chrX 3075902 . T . . END=3075903 GT:DP:GQ:MIN_DP:PL 0:29:0:29:0,0 +chrX 3075904 . T . . END=3075982 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,510 +chrX 3075983 . G GTC, 660.01 . AS_QUALapprox=|670|0;AS_VarDP=0|16|0;DP=17;QUALapprox=670;RAW_GT_COUNT=0,0,1;RAW_MQandDP=59121,17;VarDP=16 GT:AD:DP:GQ:PL:SB 1:0,16,0:16:99:670,0,670:0,0,9,7 +chrX 3075984 . T . . END=3076335 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,471 +chrX 3076336 . GTC G, 883.01 . AS_QUALapprox=|893|0;AS_VarDP=0|23|0;DP=26;QUALapprox=893;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:893,0,893:0,0,12,11 +chrX 3076339 . T . . END=3076392 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,780 +chrX 3076393 . T C, 991.04 . AS_QUALapprox=|1001|0;AS_VarDP=0|31|0;DP=31;QUALapprox=1001;RAW_GT_COUNT=0,0,1;RAW_MQandDP=110304,31;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1001,0,1001:0,0,20,11 +chrX 3076394 . G . . END=3077035 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,635 +chrX 3077036 . G A, 526.04 . AS_QUALapprox=|536|0;AS_VarDP=1|17|0;BaseQRankSum=-0.177;DP=19;MQRankSum=0.000;QUALapprox=536;RAW_GT_COUNT=0,0,1;RAW_MQandDP=68400,19;ReadPosRankSum=0.193;VarDP=18 GT:AD:DP:GQ:PL:SB 1:1,17,0:18:99:536,0,571:1,0,7,10 +chrX 3077037 . T . . END=3077553 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,487 +chrX 3077554 . G A, 561.04 . AS_QUALapprox=|571|0;AS_VarDP=0|17|0;DP=17;QUALapprox=571;RAW_GT_COUNT=0,0,1;RAW_MQandDP=61200,17;VarDP=17 GT:AD:DP:GQ:PL:SB 1:0,17,0:17:99:571,0,571:0,0,3,14 +chrX 3077555 . C . . END=3077788 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,456 +chrX 3077789 . T TTTATTATTATTATTA, 786.01 . AS_QUALapprox=|796|0;AS_VarDP=0|18|0;DP=24;QUALapprox=796;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82954,24;VarDP=18 GT:AD:DP:GQ:PL:SB 1:0,18,0:18:99:796,0,798:0,0,12,6 +chrX 3077790 . T . . END=3077856 GT:DP:GQ:MIN_DP:PL 0:19:99:19:0,469 +chrX 3077857 . T G, 567.04 . AS_QUALapprox=|577|0;AS_VarDP=0|19|0;DP=20;QUALapprox=577;RAW_GT_COUNT=0,0,1;RAW_MQandDP=68554,20;VarDP=19 GT:AD:DP:GQ:PL:SB 1:0,19,0:19:99:577,0,577:0,0,15,4 +chrX 3077858 . C . . END=3078078 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,595 +chrX 3078079 . T C, 1077.04 . AS_QUALapprox=|1087|0;AS_VarDP=0|34|0;DP=35;QUALapprox=1087;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122309,35;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1087,0,1087:0,0,15,19 +chrX 3078080 . A . . END=3078120 GT:DP:GQ:MIN_DP:PL 0:39:99:39:0,1057 +chrX 3078121 . A G, 1189.04 . AS_QUALapprox=|1199|0;AS_VarDP=0|39|0;DP=40;QUALapprox=1199;RAW_GT_COUNT=0,0,1;RAW_MQandDP=143425,40;VarDP=39 GT:AD:DP:GQ:PL:SB 1:0,39,0:39:99:1199,0,1199:0,0,19,20 +chrX 3078122 . A . . END=3078238 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,645 +chrX 3078239 . G A, 579.04 . AS_QUALapprox=|589|0;AS_VarDP=1|18|0;BaseQRankSum=0.000;DP=20;MQRankSum=0.000;QUALapprox=589;RAW_GT_COUNT=0,0,1;RAW_MQandDP=72000,20;ReadPosRankSum=-0.457;VarDP=19 GT:AD:DP:GQ:PL:SB 1:1,18,0:19:99:589,0,624:0,1,11,7 +chrX 3078240 . A . . END=3078417 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,630 +chrX 3078418 . G A, 907.04 . AS_QUALapprox=|917|0;AS_VarDP=0|29|0;DP=29;QUALapprox=917;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:917,0,917:0,0,14,15 +chrX 3078419 . C . . END=3079027 GT:DP:GQ:MIN_DP:PL 0:22:99:22:0,491 +chrX 3079028 . C T, 536.04 . AS_QUALapprox=|546|0;AS_VarDP=0|16|0;DP=16;QUALapprox=546;RAW_GT_COUNT=0,0,1;RAW_MQandDP=57600,16;VarDP=16 GT:AD:DP:GQ:PL:SB 1:0,16,0:16:99:546,0,546:0,0,8,8 +chrX 3079029 . A . . END=3079341 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,511 +chrX 3079342 . ATT A, 478.01 . AS_QUALapprox=|488|0;AS_VarDP=1|16|0;DP=30;MQRankSum=0.000;QUALapprox=488;RAW_GT_COUNT=0,0,1;RAW_MQandDP=103425,30;VarDP=17 GT:AD:DP:GQ:PL:SB 1:1,16,0:17:99:488,0,509:0,1,10,6 +chrX 3079345 . T . . END=3080004 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,224 +chrX 3080005 . A G, 687.04 . AS_QUALapprox=|697|0;AS_VarDP=0|24|0;DP=27;QUALapprox=697;RAW_GT_COUNT=0,0,1;RAW_MQandDP=95200,27;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:697,0,697:0,0,14,10 +chrX 3080006 . A . . END=3080254 GT:DP:GQ:MIN_DP:PL 0:39:99:39:0,823 +chrX 3080255 . CATGAGGTCCGGAGATGCAGACCATCCTGGCCAACATG C, 1333.01 . AS_QUALapprox=|1343|0;AS_VarDP=0|30|0;DP=32;QUALapprox=1343;RAW_GT_COUNT=0,0,1;RAW_MQandDP=112321,32;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:1343,0,1343:0,0,15,15 +chrX 3080293 . A . . END=3080432 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,720 +chrX 3080433 . T C, 945.04 . AS_QUALapprox=|955|0;AS_VarDP=0|33|0;DP=34;QUALapprox=955;RAW_GT_COUNT=0,0,1;RAW_MQandDP=120825,34;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:955,0,955:0,0,18,15 +chrX 3080434 . G . . END=3080458 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,805 +chrX 3080459 . C T, 968.04 . AS_QUALapprox=|978|0;AS_VarDP=0|30|0;DP=30;QUALapprox=978;RAW_GT_COUNT=0,0,1;RAW_MQandDP=106425,30;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:978,0,978:0,0,14,16 +chrX 3080460 . G . . END=3080471 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,684 +chrX 3080472 . C CA, 689.01 . AS_QUALapprox=|699|0;AS_VarDP=1|28|0;BaseQRankSum=-0.561;DP=31;MQRankSum=0.000;QUALapprox=699;RAW_GT_COUNT=0,0,1;RAW_MQandDP=110025,31;ReadPosRankSum=-0.777;VarDP=29 GT:AD:DP:GQ:PL:SB 1:1,28,0:29:99:699,0,725:1,0,11,17 +chrX 3080473 . A . . END=3081099 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,555 +chrX 3081100 . G A, 621.04 . AS_QUALapprox=|631|0;AS_VarDP=1|19|0;BaseQRankSum=2.792;DP=22;MQRankSum=0.000;QUALapprox=631;RAW_GT_COUNT=0,0,1;RAW_MQandDP=79200,22;ReadPosRankSum=-1.041;VarDP=20 GT:AD:DP:GQ:PL:SB 1:1,19,0:20:99:631,0,640:0,1,10,9 +chrX 3081101 . C . . END=3081459 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,556 +chrX 3081460 . T C, 579.04 . AS_QUALapprox=|589|0;AS_VarDP=0|17|0;DP=19;QUALapprox=589;RAW_GT_COUNT=0,0,1;RAW_MQandDP=66736,19;VarDP=17 GT:AD:DP:GQ:PL:SB 1:0,17,0:17:99:589,0,589:0,0,12,5 +chrX 3081461 . C . . END=3083522 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,450 +chrX 3083523 . TATCTATCC T, 441.01 . AS_QUALapprox=|451|0;AS_VarDP=0|10|0;DP=30;QUALapprox=451;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=10 GT:AD:DP:GQ:PL:SB 1:0,10,0:10:99:451,0,451:0,0,0,10 +chrX 3083532 . A . . END=3084177 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,680 +chrX 3084178 . T C, 768.04 . AS_QUALapprox=|778|0;AS_VarDP=0|23|0;DP=24;QUALapprox=778;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:778,0,778:0,0,15,8 +chrX 3084179 . T . . END=3084645 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,735 +chrX 3084646 . A G, 1011.04 . AS_QUALapprox=|1021|0;AS_VarDP=0|30|0;DP=32;QUALapprox=1021;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:1021,0,1021:0,0,13,17 +chrX 3084647 . G . . END=3085359 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,648 +chrX 3085360 . A T, 714.04 . AS_QUALapprox=|724|0;AS_VarDP=0|22|0;DP=22;QUALapprox=724;RAW_GT_COUNT=0,0,1;RAW_MQandDP=79200,22;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:724,0,724:0,0,17,5 +chrX 3085361 . A . . END=3086601 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,575 +chrX 3086602 . G A, 787.04 . AS_QUALapprox=|797|0;AS_VarDP=0|23|0;DP=25;QUALapprox=797;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:797,0,797:0,0,8,15 +chrX 3086603 . T . . END=3086660 GT:DP:GQ:MIN_DP:PL 0:17:99:17:0,477 +chrX 3086661 . CA C, 487.01 . AS_QUALapprox=|497|0;AS_VarDP=0|16|0;DP=20;QUALapprox=497;RAW_GT_COUNT=0,0,1;RAW_MQandDP=72000,20;VarDP=16 GT:AD:DP:GQ:PL:SB 1:0,16,0:16:99:497,0,497:0,0,8,8 +chrX 3086663 . A . . END=3087200 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,624 +chrX 3087201 . G T, 1025.04 . AS_QUALapprox=|1035|0;AS_VarDP=0|33|0;DP=33;QUALapprox=1035;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1035,0,1035:0,0,13,20 +chrX 3087202 . A . . END=3088563 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,591 +chrX 3088564 . CT C, 575.01 . AS_QUALapprox=|585|0;AS_VarDP=1|23|0;DP=27;MQRankSum=0.000;QUALapprox=585;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=24 GT:AD:DP:GQ:PL:SB 1:1,23,0:24:99:585,0,609:1,0,12,11 +chrX 3088566 . T . . END=3089438 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,546 +chrX 3089439 . G T, 1041.04 . AS_QUALapprox=|1051|0;AS_VarDP=0|32|0;DP=32;QUALapprox=1051;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1051,0,1051:0,0,11,21 +chrX 3089440 . T . . END=3090230 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,507 +chrX 3090231 . T C, 988.04 . AS_QUALapprox=|998|0;AS_VarDP=0|29|0;DP=31;QUALapprox=998;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:998,0,998:0,0,16,13 +chrX 3090232 . A . . END=3090318 GT:DP:GQ:MIN_DP:PL 0:37:99:37:0,1057 +chrX 3090319 . T A, 1031.04 . AS_QUALapprox=|1041|0;AS_VarDP=0|32|0;DP=35;QUALapprox=1041;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1041,0,1041:0,0,15,17 +chrX 3090320 . G . . END=3091046 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,620 +chrX 3091047 . GCTAT G, 1525.01 . AS_QUALapprox=|1535|0;AS_VarDP=0|35|0;DP=37;QUALapprox=1535;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133200,37;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,35,0:35:99:1535,0,1535:0,0,18,17 +chrX 3091052 . C . . END=3091822 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,813 +chrX 3091823 . T TGATA, 1318.01 . AS_QUALapprox=|1328|0;AS_VarDP=0|30|0;DP=30;QUALapprox=1328;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:1328,0,1328:0,0,17,13 +chrX 3091824 . G . . END=3092166 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,511 +chrX 3092167 . TGATA T, 680.01 . AS_QUALapprox=|690|0;AS_VarDP=0|16|0;DP=17;QUALapprox=690;RAW_GT_COUNT=0,0,1;RAW_MQandDP=61200,17;VarDP=16 GT:AD:DP:GQ:PL:SB 1:0,16,0:16:99:690,0,690:0,0,8,8 +chrX 3092172 . G . . END=3092214 GT:DP:GQ:MIN_DP:PL 0:19:99:19:0,526 +chrX 3092215 . A G, 699.04 . AS_QUALapprox=|709|0;AS_VarDP=0|22|0;DP=24;QUALapprox=709;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:709,0,709:0,0,11,11 +chrX 3092216 . C . . END=3092458 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,769 +chrX 3092459 . C A, 1122.04 . AS_QUALapprox=|1132|0;AS_VarDP=0|34|0;DP=35;QUALapprox=1132;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1132,0,1132:0,0,18,16 +chrX 3092460 . C . . END=3092652 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,749 +chrX 3092653 . G T, 1092.04 . AS_QUALapprox=|1102|0;AS_VarDP=0|35|0;DP=36;QUALapprox=1102;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129600,36;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,35,0:35:99:1102,0,1102:0,0,16,19 +chrX 3092654 . T . . END=3093039 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,892 +chrX 3093040 . T C, 1074.04 . AS_QUALapprox=|1084|0;AS_VarDP=0|34|0;DP=35;QUALapprox=1084;RAW_GT_COUNT=0,0,1;RAW_MQandDP=124741,35;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1084,0,1084:0,0,21,13 +chrX 3093041 . C . . END=3093291 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,798 +chrX 3093292 . G A, 842.04 . AS_QUALapprox=|852|0;AS_VarDP=1|27|0;BaseQRankSum=1.815;DP=30;MQRankSum=0.000;QUALapprox=852;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;ReadPosRankSum=-0.495;VarDP=28 GT:AD:DP:GQ:PL:SB 1:1,27,0:28:99:852,0,877:1,0,14,13 +chrX 3093293 . C . . END=3093709 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,799 +chrX 3093710 . T G, 1004.04 . AS_QUALapprox=|1014|0;AS_VarDP=1|33|0;BaseQRankSum=-0.483;DP=35;MQRankSum=0.000;QUALapprox=1014;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;ReadPosRankSum=-1.071;VarDP=34 GT:AD:DP:GQ:PL:SB 1:1,33,0:34:99:1014,0,1049:1,0,19,14 +chrX 3093711 . G . . END=3093838 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,790 +chrX 3093839 . A C, 902.04 . AS_QUALapprox=|912|0;AS_VarDP=1|29|0;BaseQRankSum=-0.417;DP=30;MQRankSum=0.000;QUALapprox=912;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;ReadPosRankSum=0.751;VarDP=30 GT:AD:DP:GQ:PL:SB 1:1,29,0:30:99:912,0,947:0,1,14,15 +chrX 3093840 . T . . END=3094363 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,804 +chrX 3094364 . A G, 819.04 . AS_QUALapprox=|829|0;AS_VarDP=0|25|0;DP=26;QUALapprox=829;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:829,0,829:0,0,13,12 +chrX 3094365 . T . . END=3094990 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,669 +chrX 3094991 . T G, 997.04 . AS_QUALapprox=|1007|0;AS_VarDP=0|31|0;DP=32;QUALapprox=1007;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1007,0,1007:0,0,14,17 +chrX 3094992 . G . . END=3095137 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,735 +chrX 3095138 . A C, 848.04 . AS_QUALapprox=|858|0;AS_VarDP=0|25|0;DP=25;QUALapprox=858;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:858,0,858:0,0,12,13 +chrX 3095139 . T . . END=3095345 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,790 +chrX 3095346 . A G, 792.04 . AS_QUALapprox=|802|0;AS_VarDP=0|28|0;DP=30;QUALapprox=802;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:802,0,802:0,0,14,14 +chrX 3095347 . T . . END=3095750 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,661 +chrX 3095751 . T C, 1073.04 . AS_QUALapprox=|1083|0;AS_VarDP=0|25|0;DP=27;QUALapprox=1083;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:1083,0,1083:0,0,14,11 +chrX 3095752 . T . . END=3095771 GT:DP:GQ:MIN_DP:PL 0:22:99:22:0,630 +chrX 3095772 . G A, 935.04 . AS_QUALapprox=|945|0;AS_VarDP=0|21|0;DP=22;QUALapprox=945;RAW_GT_COUNT=0,0,1;RAW_MQandDP=79200,22;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:945,0,945:0,0,12,9 +chrX 3095773 . C . . END=3095880 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,616 +chrX 3095881 . T C, 887.04 . AS_QUALapprox=|897|0;AS_VarDP=0|29|0;DP=30;QUALapprox=897;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:897,0,897:0,0,14,15 +chrX 3095882 . A . . END=3096022 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,823 +chrX 3096023 . G A, 947.04 . AS_QUALapprox=|957|0;AS_VarDP=0|30|0;DP=31;QUALapprox=957;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:957,0,957:0,0,16,14 +chrX 3096024 . T . . END=3096815 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,412 +chrX 3096816 . TC T, 466.01 . AS_QUALapprox=|476|0;AS_VarDP=0|15|0;DP=18;QUALapprox=476;RAW_GT_COUNT=0,0,1;RAW_MQandDP=64800,18;VarDP=15 GT:AD:DP:GQ:PL:SB 1:0,15,0:15:99:476,0,476:0,0,10,5 +chrX 3096818 . C . . END=3098046 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,461 +chrX 3098047 . A AACACACACACAC, 690.01 . AS_QUALapprox=|700|0;AS_VarDP=0|16|0;DP=25;QUALapprox=700;RAW_GT_COUNT=0,0,1;RAW_MQandDP=85104,25;VarDP=16 GT:AD:DP:GQ:PL:SB 1:0,16,0:16:99:700,0,702:0,0,10,6 +chrX 3098048 . A . . END=3098354 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,444 +chrX 3098355 . T TAG, 782.01 . AS_QUALapprox=|792|0;AS_VarDP=0|21|0;DP=25;QUALapprox=792;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:792,0,793:0,0,14,7 +chrX 3098356 . A . . END=3099028 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,630 +chrX 3099029 . T C, 917.04 . AS_QUALapprox=|927|0;AS_VarDP=0|30|0;DP=32;QUALapprox=927;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:927,0,927:0,0,16,14 +chrX 3099030 . C . . END=3100586 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,461 +chrX 3100587 . G GTTTTTTGT, 830.01 . AS_QUALapprox=|840|0;AS_VarDP=0|19|0;DP=23;QUALapprox=840;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;VarDP=19 GT:AD:DP:GQ:PL:SB 1:0,19,0:19:99:840,0,841:0,0,9,10 +chrX 3100588 . T . . END=3100643 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,680 +chrX 3100644 . T C, 1022.04 . AS_QUALapprox=|1032|0;AS_VarDP=0|30|0;DP=30;QUALapprox=1032;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:1032,0,1032:0,0,15,15 +chrX 3100645 . T . . END=3100883 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,675 +chrX 3100884 . C G, 610.04 . AS_QUALapprox=|620|0;AS_VarDP=0|20|0;DP=21;QUALapprox=620;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75600,21;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:620,0,620:0,0,8,12 +chrX 3100885 . G . . END=3101072 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,625 +chrX 3101073 . G A, 749.04 . AS_QUALapprox=|759|0;AS_VarDP=1|25|0;BaseQRankSum=-0.454;DP=28;MQRankSum=0.000;QUALapprox=759;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;ReadPosRankSum=-1.468;VarDP=26 GT:AD:DP:GQ:PL:SB 1:1,25,0:26:99:759,0,794:0,1,15,10 +chrX 3101074 . T . . END=3101423 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,674 +chrX 3101424 . T G, 918.04 . AS_QUALapprox=|928|0;AS_VarDP=0|29|0;DP=29;QUALapprox=928;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:928,0,928:0,0,14,15 +chrX 3101425 . T . . END=3101832 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,595 +chrX 3101833 . A G, 754.04 . AS_QUALapprox=|764|0;AS_VarDP=0|22|0;DP=23;QUALapprox=764;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:764,0,764:0,0,11,11 +chrX 3101834 . T . . END=3102134 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,789 +chrX 3102135 . T A,TA, 692.04 . AS_QUALapprox=|702|0|0;AS_VarDP=0|26|0|0;DP=31;QUALapprox=702;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0,0:26:99:702,0,907,805:0,0,10,16 +chrX 3102136 . A . . END=3102194 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,868 +chrX 3102195 . T C, 952.04 . AS_QUALapprox=|962|0;AS_VarDP=1|31|0;BaseQRankSum=1.803;DP=32;MQRankSum=0.000;QUALapprox=962;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;ReadPosRankSum=0.813;VarDP=32 GT:AD:DP:GQ:PL:SB 1:1,31,0:32:99:962,0,987:1,0,16,15 +chrX 3102196 . T . . END=3102307 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,813 +chrX 3102308 . A G, 928.04 . AS_QUALapprox=|938|0;AS_VarDP=0|29|0;DP=31;QUALapprox=938;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:938,0,938:0,0,18,11 +chrX 3102309 . G . . END=3102808 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,495 +chrX 3102809 . G A, 1285.04 . AS_QUALapprox=|1295|0;AS_VarDP=0|29|0;DP=29;QUALapprox=1295;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100141,29;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:1295,0,1295:0,0,14,15 +chrX 3102810 . G . . END=3102825 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,862 +chrX 3102826 . G C, 1295.04 . AS_QUALapprox=|1305|0;AS_VarDP=0|29|0;DP=29;QUALapprox=1305;RAW_GT_COUNT=0,0,1;RAW_MQandDP=99041,29;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:1305,0,1305:0,0,14,15 +chrX 3102827 . G A, 1329.04 . AS_QUALapprox=|1339|0;AS_VarDP=0|30|0;DP=30;QUALapprox=1339;RAW_GT_COUNT=0,0,1;RAW_MQandDP=102641,30;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:1339,0,1339:0,0,14,16 +chrX 3102828 . C . . END=3102828 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,889 +chrX 3102829 . G T, 1329.04 . AS_QUALapprox=|1339|0;AS_VarDP=0|30|0;DP=30;QUALapprox=1339;RAW_GT_COUNT=0,0,1;RAW_MQandDP=102641,30;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:1339,0,1339:0,0,14,16 +chrX 3102830 . T . . END=3103756 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,595 +chrX 3103757 . T C, 684.04 . AS_QUALapprox=|694|0;AS_VarDP=0|20|0;DP=20;QUALapprox=694;RAW_GT_COUNT=0,0,1;RAW_MQandDP=72000,20;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:694,0,694:0,0,9,11 +chrX 3103758 . A . . END=3105265 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,425 +chrX 3105266 . A G, 748.04 . AS_QUALapprox=|758|0;AS_VarDP=0|25|0;DP=26;QUALapprox=758;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:758,0,758:0,0,11,14 +chrX 3105267 . T . . END=3105323 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,735 +chrX 3105324 . C G, 889.04 . AS_QUALapprox=|899|0;AS_VarDP=0|27|0;DP=27;QUALapprox=899;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:899,0,899:0,0,8,19 +chrX 3105325 . T . . END=3107132 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,586 +chrX 3107133 . A G, 1150.04 . AS_QUALapprox=|1160|0;AS_VarDP=0|37|0;DP=38;QUALapprox=1160;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;VarDP=37 GT:AD:DP:GQ:PL:SB 1:0,37,0:37:99:1160,0,1160:0,0,18,19 +chrX 3107134 . A . . END=3107695 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,790 +chrX 3107696 . A AC, 950.01 . AS_QUALapprox=|960|0;AS_VarDP=0|25|0;DP=26;QUALapprox=960;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:960,0,960:0,0,16,9 +chrX 3107697 . T . . END=3111076 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,542 +chrX 3111077 . C T, 700.04 . AS_QUALapprox=|710|0;AS_VarDP=0|21|0;DP=22;QUALapprox=710;RAW_GT_COUNT=0,0,1;RAW_MQandDP=79200,22;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:710,0,710:0,0,14,7 +chrX 3111078 . G . . END=3111343 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,681 +chrX 3111344 . G A, 1052.04 . AS_QUALapprox=|1062|0;AS_VarDP=0|32|0;DP=34;QUALapprox=1062;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1062,0,1062:0,0,15,17 +chrX 3111345 . C . . END=3111439 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,794 +chrX 3111440 . T C, 889.04 . AS_QUALapprox=|899|0;AS_VarDP=0|27|0;DP=27;QUALapprox=899;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:899,0,899:0,0,7,20 +chrX 3111441 . T . . END=3112534 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,447 +chrX 3112535 . G GGGTCCTAACGAGAAGAGATAATTACAATCAGGCTACCAGAGGAAGCCTTT, 619.01 . AS_QUALapprox=|629|0;AS_VarDP=2|21|0;BaseQRankSum=-0.253;DP=43;MQRankSum=0.000;QUALapprox=629;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154800,43;ReadPosRankSum=-0.542;VarDP=23 GT:AD:DP:GQ:PL:SB 1:2,21,0:23:99:629,0,659:2,0,5,16 +chrX 3112536 . G . . END=3112835 GT:DP:GQ:MIN_DP:PL 0:37:99:37:0,725 +chrX 3112836 . C T, 987.04 . AS_QUALapprox=|997|0;AS_VarDP=0|29|0;DP=29;QUALapprox=997;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:997,0,997:0,0,18,11 +chrX 3112837 . G . . END=3113051 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,758 +chrX 3113052 . A C, 1055.04 . AS_QUALapprox=|1065|0;AS_VarDP=0|34|0;DP=35;QUALapprox=1065;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1065,0,1065:0,0,16,18 +chrX 3113053 . G . . END=3113140 GT:DP:GQ:MIN_DP:PL 0:37:99:37:0,947 +chrX 3113141 . C T, 1051.04 . AS_QUALapprox=|1061|0;AS_VarDP=0|35|0;DP=36;QUALapprox=1061;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129600,36;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,35,0:35:99:1061,0,1061:0,0,15,20 +chrX 3113142 . G . . END=3113290 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,843 +chrX 3113291 . G A, 938.04 . AS_QUALapprox=|948|0;AS_VarDP=0|29|0;DP=29;QUALapprox=948;RAW_GT_COUNT=0,0,1;RAW_MQandDP=103716,29;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:948,0,948:0,0,20,9 +chrX 3113292 . T . . END=3113319 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,938 +chrX 3113320 . G A, 1082.04 . AS_QUALapprox=|1092|0;AS_VarDP=0|34|0;DP=36;QUALapprox=1092;RAW_GT_COUNT=0,0,1;RAW_MQandDP=128916,36;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1092,0,1092:0,0,22,12 +chrX 3113321 . G . . END=3113630 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,759 +chrX 3113631 . C T, 784.04 . AS_QUALapprox=|794|0;AS_VarDP=0|25|0;DP=27;QUALapprox=794;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:794,0,794:0,0,15,10 +chrX 3113632 . T . . END=3113700 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,809 +chrX 3113701 . G A, 878.04 . AS_QUALapprox=|888|0;AS_VarDP=1|28|0;BaseQRankSum=-0.365;DP=30;MQRankSum=0.000;QUALapprox=888;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;ReadPosRankSum=-1.375;VarDP=29 GT:AD:DP:GQ:PL:SB 1:1,28,0:29:99:888,0,923:1,0,17,11 +chrX 3113702 . C . . END=3114012 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,620 +chrX 3114013 . A C, 779.04 . AS_QUALapprox=|789|0;AS_VarDP=0|24|0;DP=25;QUALapprox=789;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:789,0,789:0,0,7,17 +chrX 3114014 . A . . END=3114382 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,665 +chrX 3114383 . T TC, 1031.01 . AS_QUALapprox=|1041|0;AS_VarDP=0|27|0;DP=29;QUALapprox=1041;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:1041,0,1041:0,0,13,14 +chrX 3114384 . T . . END=3114409 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,774 +chrX 3114410 . G A, 848.04 . AS_QUALapprox=|858|0;AS_VarDP=0|27|0;DP=27;QUALapprox=858;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:858,0,858:0,0,12,15 +chrX 3114411 . A . . END=3114471 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,739 +chrX 3114472 . A G, 724.04 . AS_QUALapprox=|734|0;AS_VarDP=0|23|0;DP=25;QUALapprox=734;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:734,0,734:0,0,12,11 +chrX 3114473 . G . . END=3114526 GT:DP:GQ:MIN_DP:PL 0:22:99:22:0,605 +chrX 3114527 . G T, 571.04 . AS_QUALapprox=|581|0;AS_VarDP=0|17|0;DP=21;QUALapprox=581;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75600,21;VarDP=17 GT:AD:DP:GQ:PL:SB 1:0,17,0:17:99:581,0,581:0,0,12,5 +chrX 3114528 . C . . END=3114582 GT:DP:GQ:MIN_DP:PL 0:21:99:21:0,556 +chrX 3114583 . C G, 874.04 . AS_QUALapprox=|884|0;AS_VarDP=0|26|0;DP=27;QUALapprox=884;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:884,0,884:0,0,13,13 +chrX 3114584 . C . . END=3114839 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,864 +chrX 3114840 . T A, 895.04 . AS_QUALapprox=|905|0;AS_VarDP=0|27|0;DP=27;QUALapprox=905;RAW_GT_COUNT=0,0,1;RAW_MQandDP=64851,27;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:905,0,905:0,0,14,13 +chrX 3114841 . T . . END=3115353 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,764 +chrX 3115354 . C G, 876.04 . AS_QUALapprox=|886|0;AS_VarDP=0|27|0;DP=30;QUALapprox=886;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:886,0,886:0,0,11,16 +chrX 3115355 . G . . END=3115420 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,778 +chrX 3115421 . C CA, 898.01 . AS_QUALapprox=|908|0;AS_VarDP=0|27|0;DP=29;QUALapprox=908;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:908,0,908:0,0,14,13 +chrX 3115422 . A . . END=3115442 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,710 +chrX 3115443 . C T, 695.04 . AS_QUALapprox=|705|0;AS_VarDP=0|22|0;DP=23;QUALapprox=705;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:705,0,705:0,0,12,10 +chrX 3115444 . G . . END=3115686 GT:DP:GQ:MIN_DP:PL 0:21:99:21:0,520 +chrX 3115687 . T C, 625.04 . AS_QUALapprox=|635|0;AS_VarDP=0|19|0;DP=21;QUALapprox=635;RAW_GT_COUNT=0,0,1;RAW_MQandDP=74116,21;VarDP=19 GT:AD:DP:GQ:PL:SB 1:0,19,0:19:99:635,0,635:0,0,13,6 +chrX 3115688 . T . . END=3115698 GT:DP:GQ:MIN_DP:PL 0:20:99:20:0,661 +chrX 3115699 . CAA C, 753.01 . AS_QUALapprox=|763|0;AS_VarDP=0|19|0;DP=21;QUALapprox=763;RAW_GT_COUNT=0,0,1;RAW_MQandDP=74116,21;VarDP=19 GT:AD:DP:GQ:PL:SB 1:0,19,0:19:99:763,0,764:0,0,13,6 +chrX 3115702 . A . . END=3115900 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,575 +chrX 3115901 . T C, 615.04 . AS_QUALapprox=|625|0;AS_VarDP=0|20|0;DP=21;QUALapprox=625;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75600,21;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:625,0,625:0,0,10,10 +chrX 3115902 . G . . END=3116152 GT:DP:GQ:MIN_DP:PL 0:19:99:19:0,403 +chrX 3116153 . C T, 1127.04 . AS_QUALapprox=|1137|0;AS_VarDP=0|35|0;DP=35;QUALapprox=1137;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,35,0:35:99:1137,0,1137:0,0,17,18 +chrX 3116154 . G . . END=3116324 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,225 +chrX 3116325 . G C, 109.04 . AS_QUALapprox=|119|0;AS_VarDP=0|4|0;DP=4;QUALapprox=119;RAW_GT_COUNT=0,0,1;RAW_MQandDP=14400,4;VarDP=4 GT:AD:DP:GQ:PL:SB 1:0,4,0:4:99:119,0,119:0,0,2,2 +chrX 3116326 . T . . END=3116331 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,180 +chrX 3116332 . A . . END=3116433 GT:DP:GQ:MIN_DP:PL 0:15:0:15:0,0 +chrX 3116434 . A . . END=3116434 GT:DP:GQ:MIN_DP:PL 0:3:35:3:0,35 +chrX 3116435 . A . . END=3116445 GT:DP:GQ:MIN_DP:PL 0:4:0:4:0,0 +chrX 3116446 . G . . END=3116446 GT:DP:GQ:MIN_DP:PL 0:4:99:4:0,139 +chrX 3116447 . G . . END=3116450 GT:DP:GQ:MIN_DP:PL 0:4:0:4:0,0 +chrX 3116451 . T . . END=3116451 GT:DP:GQ:MIN_DP:PL 0:4:99:4:0,139 +chrX 3116452 . G . . END=3116452 GT:DP:GQ:MIN_DP:PL 0:5:0:5:0,0 +chrX 3116453 . A . . END=3116453 GT:DP:GQ:MIN_DP:PL 0:5:99:5:0,174 +chrX 3116454 . G . . END=3116456 GT:DP:GQ:MIN_DP:PL 0:6:0:6:0,0 +chrX 3116457 . A . . END=3116457 GT:DP:GQ:MIN_DP:PL 0:6:99:6:0,209 +chrX 3116458 . T . . END=3116460 GT:DP:GQ:MIN_DP:PL 0:6:0:6:0,0 +chrX 3116461 . A . . END=3116461 GT:DP:GQ:MIN_DP:PL 0:6:99:6:0,209 +chrX 3116462 . A . . END=3116462 GT:DP:GQ:MIN_DP:PL 0:6:0:6:0,0 +chrX 3116463 . G . . END=3116464 GT:DP:GQ:MIN_DP:PL 0:6:99:6:0,209 +chrX 3116465 . C . . END=3116466 GT:DP:GQ:MIN_DP:PL 0:6:0:6:0,0 +chrX 3116467 . A . . END=3116467 GT:DP:GQ:MIN_DP:PL 0:6:99:6:0,209 +chrX 3116468 . C . . END=3116469 GT:DP:GQ:MIN_DP:PL 0:6:0:6:0,0 +chrX 3116470 . A . . END=3116472 GT:DP:GQ:MIN_DP:PL 0:7:99:7:0,209 +chrX 3116473 . T . . END=3116474 GT:DP:GQ:MIN_DP:PL 0:9:0:9:0,0 +chrX 3116475 . A . . END=3116475 GT:DP:GQ:MIN_DP:PL 0:9:99:9:0,313 +chrX 3116476 . G . . END=3116476 GT:DP:GQ:MIN_DP:PL 0:10:0:10:0,0 +chrX 3116477 . T . . END=3116477 GT:DP:GQ:MIN_DP:PL 0:11:99:11:0,372 +chrX 3116478 . G . . END=3116480 GT:DP:GQ:MIN_DP:PL 0:12:0:12:0,0 +chrX 3116481 . G . . END=3116481 GT:DP:GQ:MIN_DP:PL 0:12:99:12:0,397 +chrX 3116482 . T . . END=3116485 GT:DP:GQ:MIN_DP:PL 0:13:0:13:0,0 +chrX 3116486 . T . . END=3116486 GT:DP:GQ:MIN_DP:PL 0:13:99:13:0,411 +chrX 3116487 . A . . END=3116493 GT:DP:GQ:MIN_DP:PL 0:15:0:15:0,0 +chrX 3116494 . A . . END=3116494 GT:DP:GQ:MIN_DP:PL 0:15:99:15:0,511 +chrX 3116495 . G . . END=3116501 GT:DP:GQ:MIN_DP:PL 0:15:0:15:0,0 +chrX 3116502 . G . . END=3116502 GT:DP:GQ:MIN_DP:PL 0:15:99:15:0,442 +chrX 3116503 . T . . END=3116503 GT:DP:GQ:MIN_DP:PL 0:15:0:15:0,0 +chrX 3116504 . G . . END=3116504 GT:DP:GQ:MIN_DP:PL 0:14:99:14:0,477 +chrX 3116505 . C . . END=3116509 GT:DP:GQ:MIN_DP:PL 0:15:0:15:0,0 +chrX 3116510 . A . . END=3116510 GT:DP:GQ:MIN_DP:PL 0:16:99:16:0,556 +chrX 3116511 . A . . END=3116511 GT:DP:GQ:MIN_DP:PL 0:16:0:16:0,0 +chrX 3116512 . A . . END=3116512 GT:DP:GQ:MIN_DP:PL 0:16:99:16:0,546 +chrX 3116513 . T . . END=3116517 GT:DP:GQ:MIN_DP:PL 0:17:0:17:0,0 +chrX 3116518 . C . . END=3116518 GT:DP:GQ:MIN_DP:PL 0:17:99:17:0,561 +chrX 3116519 . A . . END=3116520 GT:DP:GQ:MIN_DP:PL 0:17:0:17:0,0 +chrX 3116521 . A . . END=3116521 GT:DP:GQ:MIN_DP:PL 0:18:99:18:0,626 +chrX 3116522 . T . . END=3116525 GT:DP:GQ:MIN_DP:PL 0:17:0:17:0,0 +chrX 3116526 . C . . END=3116526 GT:DP:GQ:MIN_DP:PL 0:17:99:17:0,591 +chrX 3116527 . A . . END=3116527 GT:DP:GQ:MIN_DP:PL 0:18:0:18:0,0 +chrX 3116528 . C . . END=3116528 GT:DP:GQ:MIN_DP:PL 0:20:99:20:0,644 +chrX 3116529 . T . . END=3116529 GT:DP:GQ:MIN_DP:PL 0:21:0:21:0,0 +chrX 3116530 . G . . END=3116532 GT:DP:GQ:MIN_DP:PL 0:21:99:21:0,685 +chrX 3116533 . G . . END=3116534 GT:DP:GQ:MIN_DP:PL 0:21:0:21:0,0 +chrX 3116535 . A . . END=3116535 GT:DP:GQ:MIN_DP:PL 0:21:99:21:0,710 +chrX 3116536 . C . . END=3116538 GT:DP:GQ:MIN_DP:PL 0:21:0:21:0,0 +chrX 3116539 . A . . END=3116539 GT:DP:GQ:MIN_DP:PL 0:21:99:21:0,730 +chrX 3116540 . C . . END=3116541 GT:DP:GQ:MIN_DP:PL 0:21:0:21:0,0 +chrX 3116542 . C . . END=3116583 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,803 +chrX 3116584 . TA T, 276.01 . AS_QUALapprox=|286|0;AS_VarDP=0|10|0;DP=14;QUALapprox=286;RAW_GT_COUNT=0,0,1;RAW_MQandDP=47425,14;VarDP=10 GT:AD:DP:GQ:PL:SB 1:0,10,0:10:99:286,0,286:0,0,2,8 +chrX 3116586 . A . . END=3116621 GT:DP:GQ:MIN_DP:PL 0:14:99:14:0,387 +chrX 3116622 . T C, 754.04 . AS_QUALapprox=|764|0;AS_VarDP=0|17|0;DP=17;QUALapprox=764;RAW_GT_COUNT=0,0,1;RAW_MQandDP=61200,17;VarDP=17 GT:AD:DP:GQ:PL:SB 1:0,17,0:17:99:764,0,764:0,0,5,12 +chrX 3116623 . T . . END=3116631 GT:DP:GQ:MIN_DP:PL 0:18:99:18:0,497 +chrX 3116632 . T C, 838.04 . AS_QUALapprox=|848|0;AS_VarDP=0|20|0;DP=21;QUALapprox=848;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75600,21;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:848,0,848:0,0,5,15 +chrX 3116633 . G . . END=3116677 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,625 +chrX 3116678 . G A, 770.04 . AS_QUALapprox=|780|0;AS_VarDP=0|23|0;DP=23;QUALapprox=780;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:780,0,780:0,0,6,17 +chrX 3116679 . G . . END=3116936 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,710 +chrX 3116937 . A G, 972.04 . AS_QUALapprox=|982|0;AS_VarDP=0|31|0;DP=32;QUALapprox=982;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:982,0,982:0,0,20,11 +chrX 3116938 . T . . END=3117004 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,943 +chrX 3117005 . A G, 1350.04 . AS_QUALapprox=|1360|0;AS_VarDP=0|40|0;DP=41;QUALapprox=1360;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147600,41;VarDP=40 GT:AD:DP:GQ:PL:SB 1:0,40,0:40:99:1360,0,1360:0,0,23,17 +chrX 3117006 . A . . END=3117294 GT:DP:GQ:MIN_DP:PL 0:37:99:37:0,973 +chrX 3117295 . C G, 979.04 . AS_QUALapprox=|989|0;AS_VarDP=0|31|0;DP=31;QUALapprox=989;RAW_GT_COUNT=0,0,1;RAW_MQandDP=88332,31;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:989,0,989:0,0,14,17 +chrX 3117296 . T . . END=3117363 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,978 +chrX 3117364 . A C, 1552.04 . AS_QUALapprox=|1562|0;AS_VarDP=0|36|0;DP=39;QUALapprox=1562;RAW_GT_COUNT=0,0,1;RAW_MQandDP=102690,39;VarDP=36 GT:AD:DP:GQ:PL:SB 1:0,36,0:36:99:1562,0,1562:0,0,17,19 +chrX 3117365 . A . . END=3117365 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,1146 +chrX 3117366 . T C, 1552.04 . AS_QUALapprox=|1562|0;AS_VarDP=0|36|0;DP=38;QUALapprox=1562;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97794,38;VarDP=36 GT:AD:DP:GQ:PL:SB 1:0,36,0:36:99:1562,0,1562:0,0,17,19 +chrX 3117367 . G . . END=3117739 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,799 +chrX 3117740 . G A, 955.04 . AS_QUALapprox=|965|0;AS_VarDP=0|30|0;DP=32;QUALapprox=965;RAW_GT_COUNT=0,0,1;RAW_MQandDP=92841,32;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:965,0,965:0,0,16,14 +chrX 3117741 . A . . END=3117950 GT:DP:GQ:MIN_DP:PL 0:39:99:39:0,892 +chrX 3117951 . C A, 1310.04 . AS_QUALapprox=|1320|0;AS_VarDP=0|40|0;DP=40;QUALapprox=1320;RAW_GT_COUNT=0,0,1;RAW_MQandDP=142545,40;VarDP=40 GT:AD:DP:GQ:PL:SB 1:0,40,0:40:99:1320,0,1320:0,0,21,19 +chrX 3117952 . G . . END=3118107 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,829 +chrX 3118108 . C T, 993.04 . AS_QUALapprox=|1003|0;AS_VarDP=0|30|0;DP=30;QUALapprox=1003;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:1003,0,1003:0,0,15,15 +chrX 3118109 . C . . END=3118152 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,829 +chrX 3118153 . C G, 799.04 . AS_QUALapprox=|809|0;AS_VarDP=0|25|0;DP=28;QUALapprox=809;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100681,28;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:809,0,809:0,0,14,11 +chrX 3118154 . A . . END=3118194 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,685 +chrX 3118195 . G A, 784.04 . AS_QUALapprox=|794|0;AS_VarDP=0|24|0;DP=24;QUALapprox=794;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:794,0,794:0,0,12,12 +chrX 3118196 . G . . END=3118286 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,773 +chrX 3118287 . T G, 878.04 . AS_QUALapprox=|888|0;AS_VarDP=0|27|0;DP=28;QUALapprox=888;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:888,0,888:0,0,14,13 +chrX 3118288 . G . . END=3118845 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,645 +chrX 3118846 . A G, 670.04 . AS_QUALapprox=|680|0;AS_VarDP=0|21|0;DP=21;QUALapprox=680;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75600,21;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:680,0,680:0,0,6,15 +chrX 3118847 . G . . END=3119072 GT:DP:GQ:MIN_DP:PL 0:21:99:21:0,477 +chrX 3119073 . CT C, 991.01 . AS_QUALapprox=|1001|0;AS_VarDP=0|24|0;DP=25;QUALapprox=1001;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:1001,0,1001:0,0,15,9 +chrX 3119075 . T . . END=3119076 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,675 +chrX 3119077 . T C, 1026.04 . AS_QUALapprox=|1036|0;AS_VarDP=0|25|0;DP=26;QUALapprox=1036;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:1036,0,1036:0,0,16,9 +chrX 3119078 . T . . END=3119144 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,530 +chrX 3119145 . T A, 747.04 . AS_QUALapprox=|757|0;AS_VarDP=0|27|0;DP=29;QUALapprox=757;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:757,0,757:0,0,16,11 +chrX 3119146 . T . . END=3119472 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,636 +chrX 3119473 . T A, 709.04 . AS_QUALapprox=|719|0;AS_VarDP=0|21|0;DP=22;QUALapprox=719;RAW_GT_COUNT=0,0,1;RAW_MQandDP=79200,22;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:719,0,719:0,0,12,9 +chrX 3119474 . A . . END=3119713 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,605 +chrX 3119714 . T C, 992.04 . AS_QUALapprox=|1002|0;AS_VarDP=0|32|0;DP=34;QUALapprox=1002;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1002,0,1002:0,0,21,11 +chrX 3119715 . G . . END=3120110 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,546 +chrX 3120111 . T G, 744.04 . AS_QUALapprox=|754|0;AS_VarDP=0|18|0;DP=19;QUALapprox=754;RAW_GT_COUNT=0,0,1;RAW_MQandDP=65880,19;VarDP=18 GT:AD:DP:GQ:PL:SB 1:0,18,0:18:99:754,0,754:0,0,10,8 +chrX 3120112 . A . . END=3120125 GT:DP:GQ:MIN_DP:PL 0:17:99:17:0,526 +chrX 3120126 . T C, 710.04 . AS_QUALapprox=|720|0;AS_VarDP=0|16|0;DP=17;QUALapprox=720;RAW_GT_COUNT=0,0,1;RAW_MQandDP=58680,17;VarDP=16 GT:AD:DP:GQ:PL:SB 1:0,16,0:16:99:720,0,720:0,0,8,8 +chrX 3120127 . C . . END=3120135 GT:DP:GQ:MIN_DP:PL 0:14:99:14:0,412 +chrX 3120136 . C G, 620.04 . AS_QUALapprox=|630|0;AS_VarDP=0|14|0;DP=15;QUALapprox=630;RAW_GT_COUNT=0,0,1;RAW_MQandDP=51480,15;VarDP=14 GT:AD:DP:GQ:PL:SB 1:0,14,0:14:99:630,0,630:0,0,8,6 +chrX 3120137 . T . . END=3120138 GT:DP:GQ:MIN_DP:PL 0:13:99:13:0,367 +chrX 3120139 . ATT A, 575.01 . AS_QUALapprox=|585|0;AS_VarDP=0|13|0;DP=15;QUALapprox=585;RAW_GT_COUNT=0,0,1;RAW_MQandDP=49480,15;VarDP=13 GT:AD:DP:GQ:PL:SB 1:0,13,0:13:99:585,0,585:0,0,7,6 +chrX 3120142 . T . . END=3126624 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,164 +chrX 3126625 . C T, 1125.04 . AS_QUALapprox=|1135|0;AS_VarDP=0|36|0;DP=36;QUALapprox=1135;RAW_GT_COUNT=0,0,1;RAW_MQandDP=123369,36;VarDP=36 GT:AD:DP:GQ:PL:SB 1:0,36,0:36:99:1135,0,1135:0,0,17,19 +chrX 3126626 . G . . END=3146339 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,332 +chrX 3146340 . CTCTTCTTCT C, 545.01 . AS_QUALapprox=|555|0;AS_VarDP=0|13|0;DP=22;QUALapprox=555;RAW_GT_COUNT=0,0,1;RAW_MQandDP=79200,22;VarDP=13 GT:AD:DP:GQ:PL:SB 1:0,13,0:13:99:555,0,555:0,0,7,6 +chrX 3146350 . T . . END=3155789 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,432 +chrX 3155790 . GTATC G, 699.01 . AS_QUALapprox=|709|0;AS_VarDP=0|17|0;DP=31;QUALapprox=709;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=17 GT:AD:DP:GQ:PL:SB 1:0,17,0:17:99:709,0,709:0,0,9,8 +chrX 3155795 . T . . END=3189854 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,248 +chrX 3189855 . GTATATATATA G, 909.01 . AS_QUALapprox=|919|0;AS_VarDP=2|22|0;BaseQRankSum=-0.418;DP=34;MQRankSum=0.000;QUALapprox=919;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;ReadPosRankSum=1.584;VarDP=24 GT:AD:DP:GQ:PL:SB 1:2,22,0:24:99:919,0,950:0,2,11,11 +chrX 3189866 . T . . END=3190709 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,515 +chrX 3190710 . A G, 754.04 . AS_QUALapprox=|764|0;AS_VarDP=0|24|0;DP=24;QUALapprox=764;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:764,0,764:0,0,15,9 +chrX 3190711 . A . . END=3191147 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,665 +chrX 3191148 . CAG C, 814.01 . AS_QUALapprox=|824|0;AS_VarDP=0|26|0;DP=38;QUALapprox=824;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:824,0,824:0,0,17,9 +chrX 3191151 . A . . END=3209903 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,209 +chrX 3209904 . C CATCT, 934.01 . AS_QUALapprox=|944|0;AS_VarDP=0|21|0;DP=33;QUALapprox=944;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:944,0,945:0,0,9,12 +chrX 3209905 . A . . END=3215915 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,501 +chrX 3215916 . T A, 767.04 . AS_QUALapprox=|777|0;AS_VarDP=0|25|0;DP=25;QUALapprox=777;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:777,0,777:0,0,12,13 +chrX 3215917 . A . . END=3218265 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,357 +chrX 3218266 . C T, 908.04 . AS_QUALapprox=|918|0;AS_VarDP=0|28|0;DP=29;QUALapprox=918;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:918,0,918:0,0,18,10 +chrX 3218267 . A . . END=3225969 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,362 +chrX 3225970 . T C, 1100.04 . AS_QUALapprox=|1110|0;AS_VarDP=0|32|0;DP=32;QUALapprox=1110;RAW_GT_COUNT=0,0,1;RAW_MQandDP=114625,32;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1110,0,1110:0,0,14,18 +chrX 3225971 . A . . END=3226767 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,789 +chrX 3226768 . C A, 1060.04 . AS_QUALapprox=|1070|0;AS_VarDP=1|33|0;BaseQRankSum=-0.274;DP=35;MQRankSum=0.000;QUALapprox=1070;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;ReadPosRankSum=-1.377;VarDP=34 GT:AD:DP:GQ:PL:SB 1:1,33,0:34:99:1070,0,1104:1,0,19,14 +chrX 3226769 . T . . END=3227523 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,661 +chrX 3227524 . A G, 1310.04 . AS_QUALapprox=|1320|0;AS_VarDP=0|38|0;DP=38;QUALapprox=1320;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;VarDP=38 GT:AD:DP:GQ:PL:SB 1:0,38,0:38:99:1320,0,1320:0,0,17,21 +chrX 3227525 . G . . END=3227654 GT:DP:GQ:MIN_DP:PL 0:37:99:37:0,1041 +chrX 3227655 . A G, 1076.04 . AS_QUALapprox=|1086|0;AS_VarDP=0|35|0;DP=37;QUALapprox=1086;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133200,37;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,35,0:35:99:1086,0,1086:0,0,19,16 +chrX 3227656 . G . . END=3227782 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,874 +chrX 3227783 . T C, 911.04 . AS_QUALapprox=|921|0;AS_VarDP=0|30|0;DP=30;QUALapprox=921;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:921,0,921:0,0,15,15 +chrX 3227784 . A . . END=3228075 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,715 +chrX 3228076 . A G, 760.04 . AS_QUALapprox=|770|0;AS_VarDP=0|23|0;DP=25;QUALapprox=770;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:770,0,770:0,0,8,15 +chrX 3228077 . T . . END=3228169 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,651 +chrX 3228170 . CT C, 312.01 . AS_QUALapprox=|322|0;AS_VarDP=0|13|0;DP=24;QUALapprox=322;RAW_GT_COUNT=0,0,1;RAW_MQandDP=84400,24;VarDP=13 GT:AD:DP:GQ:PL:SB 1:0,13,0:13:99:322,0,322:0,0,6,7 +chrX 3228172 . T . . END=3230046 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,461 +chrX 3230047 . G A, 993.04 . AS_QUALapprox=|1003|0;AS_VarDP=1|31|0;BaseQRankSum=-0.283;DP=33;MQRankSum=0.000;QUALapprox=1003;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;ReadPosRankSum=-0.651;VarDP=32 GT:AD:DP:GQ:PL:SB 1:1,31,0:32:99:1003,0,1038:0,1,15,16 +chrX 3230048 . G . . END=3231006 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,532 +chrX 3231007 . C T, 745.04 . AS_QUALapprox=|755|0;AS_VarDP=0|22|0;DP=24;QUALapprox=755;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:755,0,755:0,0,13,9 +chrX 3231008 . C . . END=3231316 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,669 +chrX 3231317 . C T, 881.04 . AS_QUALapprox=|891|0;AS_VarDP=0|28|0;DP=28;QUALapprox=891;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:891,0,891:0,0,13,15 +chrX 3231318 . T . . END=3232029 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,526 +chrX 3232030 . T C, 1122.04 . AS_QUALapprox=|1132|0;AS_VarDP=0|34|0;DP=35;QUALapprox=1132;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1132,0,1132:0,0,18,16 +chrX 3232031 . C . . END=3232573 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,606 +chrX 3232574 . A AT, 661.01 . AS_QUALapprox=|671|0;AS_VarDP=0|29|0;DP=37;QUALapprox=671;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133200,37;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:671,0,671:0,0,19,10 +chrX 3232575 . T . . END=3232707 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,927 +chrX 3232708 . A G, 1085.04 . AS_QUALapprox=|1095|0;AS_VarDP=0|25|0;DP=27;QUALapprox=1095;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:1095,0,1095:0,0,10,15 +chrX 3232709 . T . . END=3232714 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,818 +chrX 3232715 . G T, 1155.04 . AS_QUALapprox=|1165|0;AS_VarDP=0|27|0;DP=27;QUALapprox=1165;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:1165,0,1165:0,0,11,16 +chrX 3232716 . T . . END=3232739 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,800 +chrX 3232740 . A C, 1227.04 . AS_QUALapprox=|1237|0;AS_VarDP=0|31|0;DP=31;QUALapprox=1237;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1237,0,1237:0,0,13,18 +chrX 3232741 . G . . END=3233044 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,744 +chrX 3233045 . C T, 794.04 . AS_QUALapprox=|804|0;AS_VarDP=1|25|0;BaseQRankSum=-0.241;DP=26;MQRankSum=0.000;QUALapprox=804;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;ReadPosRankSum=-1.401;VarDP=26 GT:AD:DP:GQ:PL:SB 1:1,25,0:26:99:804,0,839:1,0,11,14 +chrX 3233046 . A . . END=3233672 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,427 +chrX 3233673 . C T, 724.04 . AS_QUALapprox=|734|0;AS_VarDP=0|23|0;DP=24;QUALapprox=734;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:734,0,734:0,0,14,9 +chrX 3233674 . A . . END=3233774 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,755 +chrX 3233775 . G A, 931.04 . AS_QUALapprox=|941|0;AS_VarDP=0|29|0;DP=30;QUALapprox=941;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:941,0,941:0,0,15,14 +chrX 3233776 . C . . END=3233848 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,809 +chrX 3233849 . G A, 948.04 . AS_QUALapprox=|958|0;AS_VarDP=0|29|0;DP=29;QUALapprox=958;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:958,0,958:0,0,18,11 +chrX 3233850 . G . . END=3235040 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,651 +chrX 3235041 . G A, 888.04 . AS_QUALapprox=|898|0;AS_VarDP=0|27|0;DP=28;QUALapprox=898;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:898,0,898:0,0,14,13 +chrX 3235042 . T . . END=3235167 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,814 +chrX 3235168 . T G, 773.04 . AS_QUALapprox=|783|0;AS_VarDP=1|27|0;BaseQRankSum=1.777;DP=30;MQRankSum=0.000;QUALapprox=783;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;ReadPosRankSum=-0.557;VarDP=28 GT:AD:DP:GQ:PL:SB 1:1,27,0:28:99:783,0,793:0,1,12,15 +chrX 3235169 . T . . END=3235432 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,610 +chrX 3235433 . T C, 849.04 . AS_QUALapprox=|859|0;AS_VarDP=0|25|0;DP=25;QUALapprox=859;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:859,0,859:0,0,10,15 +chrX 3235434 . T . . END=3235679 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,705 +chrX 3235680 . A T, 1182.04 . AS_QUALapprox=|1192|0;AS_VarDP=0|36|0;DP=36;QUALapprox=1192;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129025,36;VarDP=36 GT:AD:DP:GQ:PL:SB 1:0,36,0:36:99:1192,0,1192:0,0,21,15 +chrX 3235681 . A . . END=3236215 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,630 +chrX 3236216 . A G, 1151.04 . AS_QUALapprox=|1161|0;AS_VarDP=0|35|0;DP=36;QUALapprox=1161;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129600,36;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,35,0:35:99:1161,0,1161:0,0,20,15 +chrX 3236217 . C . . END=3236710 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,685 +chrX 3236711 . CT C, 962.01 . AS_QUALapprox=|972|0;AS_VarDP=0|26|0;DP=27;QUALapprox=972;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93809,27;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:972,0,972:0,0,9,17 +chrX 3236713 . T . . END=3237099 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,540 +chrX 3237100 . T G, 874.04 . AS_QUALapprox=|884|0;AS_VarDP=1|27|0;BaseQRankSum=2.645;DP=31;MQRankSum=0.000;QUALapprox=884;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;ReadPosRankSum=0.805;VarDP=28 GT:AD:DP:GQ:PL:SB 1:1,27,0:28:99:884,0,893:0,1,15,12 +chrX 3237101 . T . . END=3237946 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,467 +chrX 3237947 . C A, 770.04 . AS_QUALapprox=|780|0;AS_VarDP=0|23|0;DP=27;QUALapprox=780;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:780,0,780:0,0,10,13 +chrX 3237948 . G . . END=3238045 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,888 +chrX 3238046 . C T, 1082.04 . AS_QUALapprox=|1092|0;AS_VarDP=0|32|0;DP=34;QUALapprox=1092;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1092,0,1092:0,0,15,17 +chrX 3238047 . T . . END=3240081 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,551 +chrX 3240082 . T A, 893.04 . AS_QUALapprox=|903|0;AS_VarDP=0|28|0;DP=29;QUALapprox=903;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:903,0,903:0,0,14,14 +chrX 3240083 . G . . END=3240361 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,611 +chrX 3240362 . T C, 711.04 . AS_QUALapprox=|721|0;AS_VarDP=0|22|0;DP=23;QUALapprox=721;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:721,0,721:0,0,10,12 +chrX 3240363 . C . . END=3240410 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,620 +chrX 3240411 . G A, 770.04 . AS_QUALapprox=|780|0;AS_VarDP=0|23|0;DP=24;QUALapprox=780;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:780,0,780:0,0,14,9 +chrX 3240412 . C . . END=3240573 GT:DP:GQ:MIN_DP:PL 0:20:99:20:0,282 +chrX 3240574 . TTTCC T, 485.01 . AS_QUALapprox=|495|0;AS_VarDP=0|11|0;DP=17;QUALapprox=495;RAW_GT_COUNT=0,0,1;RAW_MQandDP=61200,17;VarDP=11 GT:AD:DP:GQ:PL:SB 1:0,11,0:11:99:495,0,495:0,0,2,9 +chrX 3240579 . T . . END=3240685 GT:DP:GQ:MIN_DP:PL 0:16:99:16:0,315 +chrX 3240686 . CTTTCTTTCTTTCTTTCTTTCT C, 447.04 . AS_QUALapprox=|551|0;AS_VarDP=0|13|0;DP=21;QUALapprox=551;RAW_GT_COUNT=0,0,1;RAW_MQandDP=70625,21;VarDP=13 GT:AD:DP:GQ:PL:SB 1:0,13,0:13:99:551,0,485:0,0,4,5 +chrX 3240708 . T . . END=3240752 GT:DP:GQ:MIN_DP:PL 0:15:99:15:0,397 +chrX 3240753 . T C, 358.04 . AS_QUALapprox=|368|0;AS_VarDP=0|9|0;DP=20;QUALapprox=368;RAW_GT_COUNT=0,0,1;RAW_MQandDP=64342,20;VarDP=9 GT:AD:DP:GQ:PL:SB 1:0,9,0:9:99:368,0,368:0,0,4,5 +chrX 3240754 . T . . END=3240758 GT:DP:GQ:MIN_DP:PL 0:18:99:18:0,481 +chrX 3240759 . C T,CTCTT, 692.04 . AS_QUALapprox=|702|217|0;AS_VarDP=0|9|0|0;DP=21;QUALapprox=702;RAW_GT_COUNT=0,0,1;RAW_MQandDP=70917,21;VarDP=9 GT:AD:DP:GQ:PL:SB 1:0,9,0,0:9:99:702,0,485,594:0,0,4,5 +chrX 3240760 . T . . END=3240949 GT:DP:GQ:MIN_DP:PL 0:18:99:18:0,387 +chrX 3240950 . G GA, 717.01 . AS_QUALapprox=|727|0;AS_VarDP=0|18|0;DP=19;QUALapprox=727;RAW_GT_COUNT=0,0,1;RAW_MQandDP=63586,19;VarDP=18 GT:AD:DP:GQ:PL:SB 1:0,18,0:18:99:727,0,727:0,0,8,10 +chrX 3240951 . T . . END=3241639 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,472 +chrX 3241640 . T A, 764.04 . AS_QUALapprox=|774|0;AS_VarDP=0|24|0;DP=24;QUALapprox=774;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:774,0,774:0,0,16,8 +chrX 3241641 . G . . END=3242208 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,714 +chrX 3242209 . T C, 1259.04 . AS_QUALapprox=|1269|0;AS_VarDP=0|40|0;DP=41;QUALapprox=1269;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147600,41;VarDP=40 GT:AD:DP:GQ:PL:SB 1:0,40,0:40:99:1269,0,1269:0,0,20,20 +chrX 3242210 . G . . END=3242356 GT:DP:GQ:MIN_DP:PL 0:41:99:41:0,1057 +chrX 3242357 . C G, 1566.04 . AS_QUALapprox=|1576|0;AS_VarDP=0|38|0;DP=38;QUALapprox=1576;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;VarDP=38 GT:AD:DP:GQ:PL:SB 1:0,38,0:38:99:1576,0,1576:0,0,13,25 +chrX 3242358 . T . . END=3242369 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,1047 +chrX 3242370 . C T, 1457.04 . AS_QUALapprox=|1467|0;AS_VarDP=0|34|0;DP=34;QUALapprox=1467;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1467,0,1467:0,0,13,21 +chrX 3242371 . A . . END=3242496 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,704 +chrX 3242497 . C A, 733.04 . AS_QUALapprox=|743|0;AS_VarDP=0|23|0;DP=24;QUALapprox=743;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:743,0,743:0,0,11,12 +chrX 3242498 . T . . END=3242755 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,680 +chrX 3242756 . C A, 739.04 . AS_QUALapprox=|749|0;AS_VarDP=0|23|0;DP=24;QUALapprox=749;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:749,0,749:0,0,9,14 +chrX 3242757 . G . . END=3242943 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,684 +chrX 3242944 . A C, 814.04 . AS_QUALapprox=|824|0;AS_VarDP=0|25|0;DP=25;QUALapprox=824;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:824,0,824:0,0,15,10 +chrX 3242945 . T . . END=3242986 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,629 +chrX 3242987 . T C, 699.04 . AS_QUALapprox=|709|0;AS_VarDP=0|23|0;DP=23;QUALapprox=709;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:709,0,709:0,0,11,12 +chrX 3242988 . A . . END=3243079 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,719 +chrX 3243080 . A G, 1012.04 . AS_QUALapprox=|1022|0;AS_VarDP=0|31|0;DP=31;QUALapprox=1022;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1022,0,1022:0,0,14,17 +chrX 3243081 . A . . END=3243351 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,765 +chrX 3243352 . C T, 868.04 . AS_QUALapprox=|878|0;AS_VarDP=0|28|0;DP=28;QUALapprox=878;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:878,0,878:0,0,11,17 +chrX 3243353 . T . . END=3243635 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,446 +chrX 3243636 . A AGAAG, 531.01 . AS_QUALapprox=|541|0;AS_VarDP=0|13|0;DP=14;QUALapprox=541;RAW_GT_COUNT=0,0,1;RAW_MQandDP=50400,14;VarDP=13 GT:AD:DP:GQ:PL:SB 1:0,13,0:13:99:541,0,541:0,0,10,3 +chrX 3243637 . G . . END=3243724 GT:DP:GQ:MIN_DP:PL 0:13:99:13:0,238 +chrX 3243725 . GGAGGA G, 460.01 . AS_QUALapprox=|470|0;AS_VarDP=0|11|0;DP=14;QUALapprox=470;RAW_GT_COUNT=0,0,1;RAW_MQandDP=50400,14;VarDP=11 GT:AD:DP:GQ:PL:SB 1:0,11,0:11:99:470,0,470:0,0,2,9 +chrX 3243731 . G . . END=3244426 GT:DP:GQ:MIN_DP:PL 0:22:74:22:0,74 +chrX 3244427 . T C, 904.04 . AS_QUALapprox=|914|0;AS_VarDP=0|29|0;DP=29;QUALapprox=914;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:914,0,914:0,0,11,18 +chrX 3244428 . G . . END=3245310 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,481 +chrX 3245311 . C T, 837.04 . AS_QUALapprox=|847|0;AS_VarDP=0|27|0;DP=29;QUALapprox=847;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:847,0,847:0,0,17,10 +chrX 3245312 . T . . END=3247026 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,709 +chrX 3247027 . T C, 1033.04 . AS_QUALapprox=|1043|0;AS_VarDP=0|30|0;DP=30;QUALapprox=1043;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:1043,0,1043:0,0,15,15 +chrX 3247028 . A . . END=3249060 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,421 +chrX 3249061 . T C, 1052.04 . AS_QUALapprox=|1062|0;AS_VarDP=0|32|0;DP=32;QUALapprox=1062;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1062,0,1062:0,0,18,14 +chrX 3249062 . G . . END=3249967 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,669 +chrX 3249968 . G A, 1092.04 . AS_QUALapprox=|1102|0;AS_VarDP=0|32|0;DP=33;QUALapprox=1102;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1102,0,1102:0,0,15,17 +chrX 3249969 . T . . END=3252168 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,586 +chrX 3252169 . AT A, 962.01 . AS_QUALapprox=|972|0;AS_VarDP=1|27|0;BaseQRankSum=-0.231;DP=30;MQRankSum=0.000;QUALapprox=972;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;ReadPosRankSum=-1.549;VarDP=28 GT:AD:DP:GQ:PL:SB 1:1,27,0:28:99:972,0,1009:1,0,17,10 +chrX 3252171 . T . . END=3254113 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,411 +chrX 3254114 . CAG C, 528.01 . AS_QUALapprox=|538|0;AS_VarDP=0|17|0;DP=22;QUALapprox=538;RAW_GT_COUNT=0,0,1;RAW_MQandDP=79200,22;VarDP=17 GT:AD:DP:GQ:PL:SB 1:0,17,0:17:99:538,0,538:0,0,7,10 +chrX 3254117 . A . . END=3255868 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,522 +chrX 3255869 . G C, 804.04 . AS_QUALapprox=|814|0;AS_VarDP=0|24|0;DP=27;QUALapprox=814;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:814,0,814:0,0,9,15 +chrX 3255870 . T . . END=3259376 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,467 +chrX 3259377 . T C, 889.04 . AS_QUALapprox=|899|0;AS_VarDP=0|27|0;DP=27;QUALapprox=899;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:899,0,899:0,0,15,12 +chrX 3259378 . T . . END=3279506 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,154 +chrX 3279507 . TTTATTA T, 589.01 . AS_QUALapprox=|599|0;AS_VarDP=0|14|0;DP=21;QUALapprox=599;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75600,21;VarDP=14 GT:AD:DP:GQ:PL:SB 1:0,14,0:14:99:599,0,599:0,0,8,6 +chrX 3279514 . T . . END=3293306 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,307 +chrX 3293307 . T G, 1091.04 . AS_QUALapprox=|1101|0;AS_VarDP=0|35|0;DP=36;QUALapprox=1101;RAW_GT_COUNT=0,0,1;RAW_MQandDP=128050,36;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,35,0:35:99:1101,0,1101:0,0,18,17 +chrX 3293308 . G . . END=3294257 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,432 +chrX 3294258 . A C, 662.04 . AS_QUALapprox=|672|0;AS_VarDP=0|20|0;DP=20;QUALapprox=672;RAW_GT_COUNT=0,0,1;RAW_MQandDP=72000,20;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:672,0,672:0,0,12,8 +chrX 3294259 . C . . END=3294382 GT:DP:GQ:MIN_DP:PL 0:21:99:21:0,457 +chrX 3294383 . C G, 738.04 . AS_QUALapprox=|748|0;AS_VarDP=0|24|0;DP=25;QUALapprox=748;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:748,0,748:0,0,13,11 +chrX 3294384 . C . . END=3294539 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,705 +chrX 3294540 . T A, 958.04 . AS_QUALapprox=|968|0;AS_VarDP=0|29|0;DP=30;QUALapprox=968;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:968,0,968:0,0,9,20 +chrX 3294541 . G . . END=3294781 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,645 +chrX 3294782 . G A, 663.04 . AS_QUALapprox=|673|0;AS_VarDP=0|21|0;DP=21;QUALapprox=673;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75600,21;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:673,0,673:0,0,11,10 +chrX 3294783 . C . . END=3294891 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,580 +chrX 3294892 . A G, 779.04 . AS_QUALapprox=|789|0;AS_VarDP=0|24|0;DP=25;QUALapprox=789;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:789,0,789:0,0,14,10 +chrX 3294893 . T . . END=3295018 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,694 +chrX 3295019 . A G, 818.04 . AS_QUALapprox=|828|0;AS_VarDP=0|27|0;DP=29;QUALapprox=828;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:828,0,828:0,0,17,10 +chrX 3295020 . T . . END=3295474 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,858 +chrX 3295475 . G T, 1003.04 . AS_QUALapprox=|1013|0;AS_VarDP=0|30|0;DP=30;QUALapprox=1013;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:1013,0,1013:0,0,17,13 +chrX 3295476 . A . . END=3295540 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,719 +chrX 3295541 . G A, 928.04 . AS_QUALapprox=|938|0;AS_VarDP=0|29|0;DP=31;QUALapprox=938;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:938,0,938:0,0,14,15 +chrX 3295542 . C . . END=3295761 GT:DP:GQ:MIN_DP:PL 0:22:99:22:0,600 +chrX 3295762 . C T, 839.04 . AS_QUALapprox=|849|0;AS_VarDP=0|25|0;DP=26;QUALapprox=849;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:849,0,849:0,0,13,12 +chrX 3295763 . A . . END=3295869 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,794 +chrX 3295870 . A G, 903.04 . AS_QUALapprox=|913|0;AS_VarDP=0|29|0;DP=29;QUALapprox=913;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:913,0,913:0,0,17,12 +chrX 3295871 . G . . END=3296134 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,670 +chrX 3296135 . C A, 879.04 . AS_QUALapprox=|889|0;AS_VarDP=1|28|0;BaseQRankSum=1.853;DP=30;MQRankSum=0.000;QUALapprox=889;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;ReadPosRankSum=-0.419;VarDP=29 GT:AD:DP:GQ:PL:SB 1:1,28,0:29:99:889,0,913:0,1,11,17 +chrX 3296136 . C . . END=3296270 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,764 +chrX 3296271 . T G, 863.04 . AS_QUALapprox=|873|0;AS_VarDP=0|27|0;DP=27;QUALapprox=873;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:873,0,873:0,0,13,14 +chrX 3296272 . A . . END=3296771 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,500 +chrX 3296772 . T TTTTA, 957.01 . AS_QUALapprox=|967|0;AS_VarDP=0|22|0;DP=24;QUALapprox=967;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:967,0,967:0,0,14,8 +chrX 3296773 . T . . END=3296913 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,695 +chrX 3296914 . T A, 969.04 . AS_QUALapprox=|979|0;AS_VarDP=0|30|0;DP=31;QUALapprox=979;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:979,0,979:0,0,18,12 +chrX 3296915 . T . . END=3296924 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,892 +chrX 3296925 . A G, 971.04 . AS_QUALapprox=|981|0;AS_VarDP=0|30|0;DP=30;QUALapprox=981;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:981,0,981:0,0,16,14 +chrX 3296926 . G . . END=3297358 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,734 +chrX 3297359 . G A, 976.04 . AS_QUALapprox=|986|0;AS_VarDP=0|31|0;DP=33;QUALapprox=986;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:986,0,986:0,0,16,15 +chrX 3297360 . A . . END=3297407 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,878 +chrX 3297408 . T A, 913.04 . AS_QUALapprox=|923|0;AS_VarDP=0|28|0;DP=28;QUALapprox=923;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:923,0,923:0,0,13,15 +chrX 3297409 . T . . END=3297449 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,700 +chrX 3297450 . A T, 839.04 . AS_QUALapprox=|849|0;AS_VarDP=0|25|0;DP=26;QUALapprox=849;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:849,0,849:0,0,11,14 +chrX 3297451 . T . . END=3297610 GT:DP:GQ:MIN_DP:PL 0:16:99:16:0,407 +chrX 3297611 . T C, 421.04 . AS_QUALapprox=|431|0;AS_VarDP=0|14|0;DP=15;QUALapprox=431;RAW_GT_COUNT=0,0,1;RAW_MQandDP=54000,15;VarDP=14 GT:AD:DP:GQ:PL:SB 1:0,14,0:14:99:431,0,431:0,0,8,6 +chrX 3297612 . T . . END=3297783 GT:DP:GQ:MIN_DP:PL 0:17:99:17:0,442 +chrX 3297784 . A G, 447.04 . AS_QUALapprox=|457|0;AS_VarDP=0|14|0;DP=16;QUALapprox=457;RAW_GT_COUNT=0,0,1;RAW_MQandDP=53065,16;VarDP=14 GT:AD:DP:GQ:PL:SB 1:0,14,0:14:99:457,0,457:0,0,5,9 +chrX 3297785 . A . . END=3297918 GT:DP:GQ:MIN_DP:PL 0:17:99:17:0,450 +chrX 3297919 . A G, 511.04 . AS_QUALapprox=|521|0;AS_VarDP=0|15|0;DP=15;QUALapprox=521;RAW_GT_COUNT=0,0,1;RAW_MQandDP=54000,15;VarDP=15 GT:AD:DP:GQ:PL:SB 1:0,15,0:15:99:521,0,521:0,0,8,7 +chrX 3297920 . A . . END=3297973 GT:DP:GQ:MIN_DP:PL 0:20:99:20:0,501 +chrX 3297974 . T C, 814.04 . AS_QUALapprox=|824|0;AS_VarDP=0|25|0;DP=27;QUALapprox=824;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:824,0,824:0,0,13,12 +chrX 3297975 . G . . END=3298018 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,809 +chrX 3298019 . C G, 853.04 . AS_QUALapprox=|863|0;AS_VarDP=0|26|0;DP=28;QUALapprox=863;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:863,0,863:0,0,14,12 +chrX 3298020 . G . . END=3298075 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,790 +chrX 3298076 . A G, 813.04 . AS_QUALapprox=|823|0;AS_VarDP=0|24|0;DP=24;QUALapprox=823;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:823,0,823:0,0,14,10 +chrX 3298077 . C . . END=3298180 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,749 +chrX 3298181 . C T, 853.04 . AS_QUALapprox=|863|0;AS_VarDP=1|28|0;BaseQRankSum=-0.424;DP=29;MQRankSum=0.000;QUALapprox=863;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;ReadPosRankSum=0.479;VarDP=29 GT:AD:DP:GQ:PL:SB 1:1,28,0:29:99:863,0,898:1,0,11,17 +chrX 3298182 . G . . END=3298215 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,882 +chrX 3298216 . T C, 863.04 . AS_QUALapprox=|873|0;AS_VarDP=1|28|0;BaseQRankSum=-0.364;DP=29;MQRankSum=0.000;QUALapprox=873;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;ReadPosRankSum=1.376;VarDP=29 GT:AD:DP:GQ:PL:SB 1:1,28,0:29:99:873,0,908:1,0,10,18 +chrX 3298217 . A . . END=3298267 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,804 +chrX 3298268 . C A, 819.04 . AS_QUALapprox=|829|0;AS_VarDP=0|25|0;DP=26;QUALapprox=829;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:829,0,829:0,0,12,13 +chrX 3298269 . A . . END=3298284 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,739 +chrX 3298285 . A G, 766.04 . AS_QUALapprox=|776|0;AS_VarDP=0|23|0;DP=23;QUALapprox=776;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:776,0,776:0,0,9,14 +chrX 3298286 . G . . END=3298523 GT:DP:GQ:MIN_DP:PL 0:22:99:22:0,432 +chrX 3298524 . C T, 784.04 . AS_QUALapprox=|794|0;AS_VarDP=0|24|0;DP=24;QUALapprox=794;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:794,0,794:0,0,14,10 +chrX 3298525 . A . . END=3298681 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,819 +chrX 3298682 . A G, 1047.04 . AS_QUALapprox=|1057|0;AS_VarDP=0|33|0;DP=37;QUALapprox=1057;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133200,37;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1057,0,1057:0,0,16,17 +chrX 3298683 . C . . END=3298866 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,810 +chrX 3298867 . G A, 839.04 . AS_QUALapprox=|849|0;AS_VarDP=0|25|0;DP=26;QUALapprox=849;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:849,0,849:0,0,15,10 +chrX 3298868 . G . . END=3299137 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,690 +chrX 3299138 . A T, 1650.04 . AS_QUALapprox=|1660|0;AS_VarDP=0|37|0;DP=38;QUALapprox=1660;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;VarDP=37 GT:AD:DP:GQ:PL:SB 1:0,37,0:37:99:1660,0,1660:0,0,17,20 +chrX 3299139 . G A, 1650.04 . AS_QUALapprox=|1660|0;AS_VarDP=0|37|0;DP=38;QUALapprox=1660;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;VarDP=37 GT:AD:DP:GQ:PL:SB 1:0,37,0:37:99:1660,0,1660:0,0,17,20 +chrX 3299140 . G . . END=3299910 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,675 +chrX 3299911 . G GGA, 764.01 . AS_QUALapprox=|774|0;AS_VarDP=0|23|0;DP=27;QUALapprox=774;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:774,0,774:0,0,9,14 +chrX 3299912 . G . . END=3299963 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,780 +chrX 3299964 . T C, 927.04 . AS_QUALapprox=|937|0;AS_VarDP=0|29|0;DP=30;QUALapprox=937;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:937,0,937:0,0,11,18 +chrX 3299965 . G . . END=3300310 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,744 +chrX 3300311 . A G, 997.04 . AS_QUALapprox=|1007|0;AS_VarDP=0|31|0;DP=33;QUALapprox=1007;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1007,0,1007:0,0,18,13 +chrX 3300312 . G . . END=3300328 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,1023 +chrX 3300329 . G T, 1132.04 . AS_QUALapprox=|1142|0;AS_VarDP=0|34|0;DP=36;QUALapprox=1142;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129600,36;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1142,0,1142:0,0,21,13 +chrX 3300330 . T . . END=3300566 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,481 +chrX 3300567 . G A, 997.04 . AS_QUALapprox=|1007|0;AS_VarDP=0|29|0;DP=30;QUALapprox=1007;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:1007,0,1007:0,0,16,13 +chrX 3300568 . A . . END=3300703 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,958 +chrX 3300704 . G A, 1032.04 . AS_QUALapprox=|1042|0;AS_VarDP=0|33|0;DP=33;QUALapprox=1042;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1042,0,1042:0,0,12,21 +chrX 3300705 . T . . END=3300765 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,1032 +chrX 3300766 . T C, 1604.04 . AS_QUALapprox=|1614|0;AS_VarDP=0|37|0;DP=38;QUALapprox=1614;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;VarDP=37 GT:AD:DP:GQ:PL:SB 1:0,37,0:37:99:1614,0,1614:0,0,15,22 +chrX 3300767 . G . . END=3300772 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,1167 +chrX 3300773 . T C, 1555.04 . AS_QUALapprox=|1565|0;AS_VarDP=0|35|0;DP=35;QUALapprox=1565;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,35,0:35:99:1565,0,1565:0,0,13,22 +chrX 3300774 . A . . END=3300999 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,591 +chrX 3301000 . A C, 655.04 . AS_QUALapprox=|665|0;AS_VarDP=0|20|0;DP=21;QUALapprox=665;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75600,21;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:665,0,665:0,0,7,13 +chrX 3301001 . C . . END=3301087 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,716 +chrX 3301088 . G A, 780.04 . AS_QUALapprox=|790|0;AS_VarDP=0|23|0;DP=24;QUALapprox=790;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:790,0,790:0,0,8,15 +chrX 3301089 . T . . END=3301234 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,552 +chrX 3301235 . A C, 798.04 . AS_QUALapprox=|808|0;AS_VarDP=0|26|0;DP=27;QUALapprox=808;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:808,0,808:0,0,15,11 +chrX 3301236 . A . . END=3301301 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,768 +chrX 3301302 . T C, 902.04 . AS_QUALapprox=|912|0;AS_VarDP=1|30|0;BaseQRankSum=-0.514;DP=31;MQRankSum=0.000;QUALapprox=912;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;ReadPosRankSum=-0.112;VarDP=31 GT:AD:DP:GQ:PL:SB 1:1,30,0:31:99:912,0,946:1,0,22,8 +chrX 3301303 . A . . END=3301495 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,883 +chrX 3301496 . G A, 1051.04 . AS_QUALapprox=|1061|0;AS_VarDP=1|26|0;BaseQRankSum=-0.141;DP=27;MQRankSum=0.000;QUALapprox=1061;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;ReadPosRankSum=-1.541;VarDP=27 GT:AD:DP:GQ:PL:SB 1:1,26,0:27:99:1061,0,1106:0,1,12,14 +chrX 3301497 . G . . END=3301502 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,873 +chrX 3301503 . G A, 1018.04 . AS_QUALapprox=|1028|0;AS_VarDP=1|25|0;BaseQRankSum=-0.151;DP=26;MQRankSum=0.000;QUALapprox=1028;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;ReadPosRankSum=-1.156;VarDP=26 GT:AD:DP:GQ:PL:SB 1:1,25,0:26:99:1028,0,1073:0,1,12,13 +chrX 3301504 . C . . END=3301745 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,659 +chrX 3301746 . G T, 1140.04 . AS_QUALapprox=|1150|0;AS_VarDP=0|26|0;DP=27;QUALapprox=1150;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:1150,0,1150:0,0,18,8 +chrX 3301747 . G . . END=3301749 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,859 +chrX 3301750 . C T, 1115.04 . AS_QUALapprox=|1125|0;AS_VarDP=0|25|0;DP=25;QUALapprox=1125;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:1125,0,1125:0,0,17,8 +chrX 3301751 . G . . END=3301763 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,824 +chrX 3301764 . G A, 814.04 . AS_QUALapprox=|824|0;AS_VarDP=0|24|0;DP=26;QUALapprox=824;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:824,0,824:0,0,16,8 +chrX 3301765 . T . . END=3301814 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,710 +chrX 3301815 . C CT, 701.01 . AS_QUALapprox=|711|0;AS_VarDP=0|25|0;DP=28;QUALapprox=711;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:711,0,712:0,0,16,9 +chrX 3301816 . T . . END=3301904 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,844 +chrX 3301905 . C T, 868.04 . AS_QUALapprox=|878|0;AS_VarDP=0|27|0;DP=27;QUALapprox=878;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:878,0,878:0,0,9,18 +chrX 3301906 . A . . END=3302057 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,715 +chrX 3302058 . A G, 878.04 . AS_QUALapprox=|888|0;AS_VarDP=0|28|0;DP=28;QUALapprox=888;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:888,0,888:0,0,14,14 +chrX 3302059 . G . . END=3302629 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,664 +chrX 3302630 . C G, 1349.04 . AS_QUALapprox=|1359|0;AS_VarDP=0|44|0;DP=45;QUALapprox=1359;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162000,45;VarDP=44 GT:AD:DP:GQ:PL:SB 1:0,44,0:44:99:1359,0,1359:0,0,20,24 +chrX 3302631 . T . . END=3302677 GT:DP:GQ:MIN_DP:PL 0:42:99:42:0,1226 +chrX 3302678 . G A, 1216.04 . AS_QUALapprox=|1226|0;AS_VarDP=0|37|0;DP=37;QUALapprox=1226;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133200,37;VarDP=37 GT:AD:DP:GQ:PL:SB 1:0,37,0:37:99:1226,0,1226:0,0,14,23 +chrX 3302679 . T . . END=3302701 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,1057 +chrX 3302702 . A G, 1041.04 . AS_QUALapprox=|1051|0;AS_VarDP=0|33|0;DP=34;QUALapprox=1051;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1051,0,1051:0,0,11,22 +chrX 3302703 . T . . END=3302879 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,814 +chrX 3302880 . T C, 789.04 . AS_QUALapprox=|799|0;AS_VarDP=0|25|0;DP=25;QUALapprox=799;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:799,0,799:0,0,11,14 +chrX 3302881 . T . . END=3303015 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,631 +chrX 3303016 . T C, 793.04 . AS_QUALapprox=|803|0;AS_VarDP=0|26|0;DP=26;QUALapprox=803;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:803,0,803:0,0,15,11 +chrX 3303017 . G . . END=3303066 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,709 +chrX 3303067 . CAGGCTTCTCACTG C, 1070.01 . AS_QUALapprox=|1080|0;AS_VarDP=0|24|0;DP=25;QUALapprox=1080;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:1080,0,1080:0,0,12,12 +chrX 3303081 . A . . END=3303096 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,774 +chrX 3303097 . A C, 817.04 . AS_QUALapprox=|827|0;AS_VarDP=0|27|0;DP=28;QUALapprox=827;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:827,0,827:0,0,12,15 +chrX 3303098 . G . . END=3303199 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,585 +chrX 3303200 . C T, 640.04 . AS_QUALapprox=|650|0;AS_VarDP=0|20|0;DP=20;QUALapprox=650;RAW_GT_COUNT=0,0,1;RAW_MQandDP=72000,20;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:650,0,650:0,0,9,11 +chrX 3303201 . T . . END=3303264 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,640 +chrX 3303265 . T C, 837.04 . AS_QUALapprox=|847|0;AS_VarDP=0|25|0;DP=25;QUALapprox=847;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:847,0,847:0,0,13,12 +chrX 3303266 . C . . END=3303393 GT:DP:GQ:MIN_DP:PL 0:22:99:22:0,403 +chrX 3303394 . CAA C, 69.01 . AS_QUALapprox=|79|0;AS_VarDP=4|6|0;DP=20;MQRankSum=0.842;QUALapprox=79;RAW_GT_COUNT=0,0,1;RAW_MQandDP=70000,20;VarDP=10 GT:AD:DP:GQ:PL:SB 1:4,6,0:10:79:79,0,159:0,4,4,2 +chrX 3303397 . A . . END=3303439 GT:DP:GQ:MIN_DP:PL 0:17:99:17:0,450 +chrX 3303440 . A G, 664.04 . AS_QUALapprox=|674|0;AS_VarDP=0|20|0;DP=20;QUALapprox=674;RAW_GT_COUNT=0,0,1;RAW_MQandDP=71764,20;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:674,0,674:0,0,10,10 +chrX 3303441 . G . . END=3303558 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,610 +chrX 3303559 . A G, 957.04 . AS_QUALapprox=|967|0;AS_VarDP=0|31|0;DP=31;QUALapprox=967;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:967,0,967:0,0,13,18 +chrX 3303560 . A . . END=3303782 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,893 +chrX 3303783 . G A, 856.04 . AS_QUALapprox=|866|0;AS_VarDP=2|28|0;BaseQRankSum=2.601;DP=31;MQRankSum=0.000;QUALapprox=866;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;ReadPosRankSum=0.874;VarDP=30 GT:AD:DP:GQ:PL:SB 1:2,28,0:30:99:866,0,901:1,1,19,9 +chrX 3303784 . A . . END=3303895 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,889 +chrX 3303896 . T C, 1042.04 . AS_QUALapprox=|1052|0;AS_VarDP=0|32|0;DP=34;QUALapprox=1052;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1052,0,1052:0,0,19,13 +chrX 3303897 . C . . END=3304087 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,690 +chrX 3304088 . G A, 887.04 . AS_QUALapprox=|897|0;AS_VarDP=0|27|0;DP=27;QUALapprox=897;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:897,0,897:0,0,8,19 +chrX 3304089 . C . . END=3304106 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,794 +chrX 3304107 . C G, 948.04 . AS_QUALapprox=|958|0;AS_VarDP=0|29|0;DP=29;QUALapprox=958;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:958,0,958:0,0,9,20 +chrX 3304108 . T . . END=3304129 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,794 +chrX 3304130 . C A,CAA, 862.04 . AS_QUALapprox=|872|0|0;AS_VarDP=0|24|0|0;DP=26;QUALapprox=872;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0,0:24:99:872,0,951,911:0,0,8,16 +chrX 3304131 . A . . END=3304190 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,565 +chrX 3304191 . G A, 630.04 . AS_QUALapprox=|640|0;AS_VarDP=0|19|0;DP=20;QUALapprox=640;RAW_GT_COUNT=0,0,1;RAW_MQandDP=72000,20;VarDP=19 GT:AD:DP:GQ:PL:SB 1:0,19,0:19:99:640,0,640:0,0,6,13 +chrX 3304192 . T . . END=3304250 GT:DP:GQ:MIN_DP:PL 0:21:99:21:0,541 +chrX 3304251 . T C, 634.04 . AS_QUALapprox=|644|0;AS_VarDP=0|20|0;DP=20;QUALapprox=644;RAW_GT_COUNT=0,0,1;RAW_MQandDP=72000,20;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:644,0,644:0,0,8,12 +chrX 3304252 . C . . END=3304396 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,630 +chrX 3304397 . A G, 640.04 . AS_QUALapprox=|650|0;AS_VarDP=0|20|0;DP=20;QUALapprox=650;RAW_GT_COUNT=0,0,1;RAW_MQandDP=72000,20;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:650,0,650:0,0,10,10 +chrX 3304398 . G . . END=3304459 GT:DP:GQ:MIN_DP:PL 0:19:99:19:0,487 +chrX 3304460 . T C, 566.04 . AS_QUALapprox=|576|0;AS_VarDP=0|18|0;DP=19;QUALapprox=576;RAW_GT_COUNT=0,0,1;RAW_MQandDP=68400,19;VarDP=18 GT:AD:DP:GQ:PL:SB 1:0,18,0:18:99:576,0,576:0,0,10,8 +chrX 3304461 . G . . END=3304505 GT:DP:GQ:MIN_DP:PL 0:18:99:18:0,550 +chrX 3304506 . T G, 581.04 . AS_QUALapprox=|591|0;AS_VarDP=0|17|0;DP=18;QUALapprox=591;RAW_GT_COUNT=0,0,1;RAW_MQandDP=64800,18;VarDP=17 GT:AD:DP:GQ:PL:SB 1:0,17,0:17:99:591,0,591:0,0,9,8 +chrX 3304507 . T . . END=3305114 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,452 +chrX 3305115 . G A, 1111.04 . AS_QUALapprox=|1121|0;AS_VarDP=0|34|0;DP=34;QUALapprox=1121;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1121,0,1121:0,0,20,14 +chrX 3305116 . T . . END=3305451 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,530 +chrX 3305452 . C T, 799.04 . AS_QUALapprox=|809|0;AS_VarDP=0|25|0;DP=26;QUALapprox=809;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:809,0,809:0,0,14,11 +chrX 3305453 . C . . END=3305601 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,544 +chrX 3305602 . A G, 1012.04 . AS_QUALapprox=|1022|0;AS_VarDP=0|30|0;DP=30;QUALapprox=1022;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:1022,0,1022:0,0,17,13 +chrX 3305603 . G . . END=3305683 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,824 +chrX 3305684 . T C, 1070.04 . AS_QUALapprox=|1080|0;AS_VarDP=0|35|0;DP=35;QUALapprox=1080;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,35,0:35:99:1080,0,1080:0,0,19,16 +chrX 3305685 . A . . END=3305827 GT:DP:GQ:MIN_DP:PL 0:39:99:39:0,1068 +chrX 3305828 . CT C, 1193.01 . AS_QUALapprox=|1203|0;AS_VarDP=0|35|0;DP=39;QUALapprox=1203;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140400,39;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,35,0:35:99:1203,0,1203:0,0,17,18 +chrX 3305830 . T . . END=3305844 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,977 +chrX 3305845 . C T, 1037.04 . AS_QUALapprox=|1047|0;AS_VarDP=0|33|0;DP=35;QUALapprox=1047;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1047,0,1047:0,0,15,18 +chrX 3305846 . C . . END=3306163 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,760 +chrX 3306164 . G A, 1430.04 . AS_QUALapprox=|1440|0;AS_VarDP=0|32|0;DP=33;QUALapprox=1440;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1440,0,1440:0,0,12,20 +chrX 3306165 . G A, 1430.04 . AS_QUALapprox=|1440|0;AS_VarDP=0|32|0;DP=33;QUALapprox=1440;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1440,0,1440:0,0,12,20 +chrX 3306166 . G . . END=3306178 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,977 +chrX 3306179 . C A, 1082.04 . AS_QUALapprox=|1092|0;AS_VarDP=0|34|0;DP=35;QUALapprox=1092;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1092,0,1092:0,0,14,20 +chrX 3306180 . C . . END=3306215 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,1003 +chrX 3306216 . A G, 998.04 . AS_QUALapprox=|1008|0;AS_VarDP=0|30|0;DP=31;QUALapprox=1008;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:1008,0,1008:0,0,10,20 +chrX 3306217 . T . . END=3306838 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,780 +chrX 3306839 . CATCTATCT C, 595.01 . AS_QUALapprox=|605|0;AS_VarDP=0|14|0;DP=18;QUALapprox=605;RAW_GT_COUNT=0,0,1;RAW_MQandDP=64800,18;VarDP=14 GT:AD:DP:GQ:PL:SB 1:0,14,0:14:99:605,0,605:0,0,3,11 +chrX 3306848 . A . . END=3306945 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,625 +chrX 3306946 . TC T, 1096.01 . AS_QUALapprox=|1106|0;AS_VarDP=0|25|0;DP=25;QUALapprox=1106;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:1106,0,1106:0,0,13,12 +chrX 3306948 . A . . END=3306957 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,694 +chrX 3306958 . C CA, 1061.01 . AS_QUALapprox=|1071|0;AS_VarDP=0|24|0;DP=25;QUALapprox=1071;RAW_GT_COUNT=0,0,1;RAW_MQandDP=87769,25;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:1071,0,1071:0,0,12,12 +chrX 3306959 . T TCTATC, 1106.01 . AS_QUALapprox=|1116|0;AS_VarDP=0|25|0;DP=26;QUALapprox=1116;RAW_GT_COUNT=0,0,1;RAW_MQandDP=88210,26;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:1116,0,1116:0,0,13,12 +chrX 3306960 . A . . END=3306961 GT:DP:GQ:MIN_DP:PL 0:20:99:20:0,620 +chrX 3306962 . G C, 980.04 . AS_QUALapprox=|990|0;AS_VarDP=0|22|0;DP=23;QUALapprox=990;RAW_GT_COUNT=0,0,1;RAW_MQandDP=77410,23;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:990,0,990:0,0,12,10 +chrX 3306963 . T . . END=3306973 GT:DP:GQ:MIN_DP:PL 0:20:99:20:0,595 +chrX 3306974 . C G, 1004.04 . AS_QUALapprox=|1014|0;AS_VarDP=0|23|0;DP=25;QUALapprox=1014;RAW_GT_COUNT=0,0,1;RAW_MQandDP=83819,25;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:1014,0,1014:0,0,13,10 +chrX 3306975 . T . . END=3307022 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,600 +chrX 3307023 . CTATCTATCTATG C, 834.01 . AS_QUALapprox=|844|0;AS_VarDP=0|19|0;DP=23;QUALapprox=844;RAW_GT_COUNT=0,0,1;RAW_MQandDP=76619,23;VarDP=19 GT:AD:DP:GQ:PL:SB 1:0,19,0:19:99:844,0,844:0,0,10,9 +chrX 3307036 . T . . END=3307423 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,268 +chrX 3307424 . T TTATC, 1194.01 . AS_QUALapprox=|1204|0;AS_VarDP=0|27|0;DP=32;QUALapprox=1204;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:1204,0,1205:0,0,12,15 +chrX 3307425 . T . . END=3310369 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,520 +chrX 3310370 . G A, 818.04 . AS_QUALapprox=|828|0;AS_VarDP=0|26|0;DP=27;QUALapprox=828;RAW_GT_COUNT=0,0,1;RAW_MQandDP=59133,27;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:828,0,828:0,0,4,22 +chrX 3310371 . G . . END=3310611 GT:DP:GQ:MIN_DP:PL 0:19:99:19:0,233 +chrX 3310612 . G C, 260.04 . AS_QUALapprox=|270|0;AS_VarDP=0|6|0;DP=6;QUALapprox=270;RAW_GT_COUNT=0,0,1;RAW_MQandDP=7981,6;VarDP=6 GT:AD:DP:GQ:PL:SB 1:0,6,0:6:99:270,0,270:0,0,4,2 +chrX 3310613 . G . . END=3310621 GT:DP:GQ:MIN_DP:PL 0:6:99:6:0,178 +chrX 3310622 . G C, 260.04 . AS_QUALapprox=|270|0;AS_VarDP=0|6|0;DP=6;QUALapprox=270;RAW_GT_COUNT=0,0,1;RAW_MQandDP=7981,6;VarDP=6 GT:AD:DP:GQ:PL:SB 1:0,6,0:6:99:270,0,270:0,0,4,2 +chrX 3310623 . G . . END=3310849 GT:DP:GQ:MIN_DP:PL 0:19:99:19:0,164 +chrX 3310850 . A G, 618.04 . AS_QUALapprox=|628|0;AS_VarDP=0|19|0;DP=19;QUALapprox=628;RAW_GT_COUNT=0,0,1;RAW_MQandDP=60840,19;VarDP=19 GT:AD:DP:GQ:PL:SB 1:0,19,0:19:99:628,0,628:0,0,10,9 +chrX 3310851 . G . . END=3311992 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,569 +chrX 3311993 . A T, 868.04 . AS_QUALapprox=|878|0;AS_VarDP=0|27|0;DP=27;QUALapprox=878;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:878,0,878:0,0,14,13 +chrX 3311994 . G . . END=3312258 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,758 +chrX 3312259 . C G, 854.04 . AS_QUALapprox=|864|0;AS_VarDP=0|26|0;DP=27;QUALapprox=864;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:864,0,864:0,0,13,13 +chrX 3312260 . T . . END=3312729 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,668 +chrX 3312730 . GT G, 832.01 . AS_QUALapprox=|842|0;AS_VarDP=0|28|0;DP=32;QUALapprox=842;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:842,0,842:0,0,12,16 +chrX 3312732 . T . . END=3313216 GT:DP:GQ:MIN_DP:PL 0:37:99:37:0,854 +chrX 3313217 . A G, 982.04 . AS_QUALapprox=|992|0;AS_VarDP=1|32|0;BaseQRankSum=2.152;DP=35;MQRankSum=0.000;QUALapprox=992;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;ReadPosRankSum=-1.209;VarDP=33 GT:AD:DP:GQ:PL:SB 1:1,32,0:33:99:992,0,1001:1,0,13,19 +chrX 3313218 . T . . END=3313316 GT:DP:GQ:MIN_DP:PL 0:37:99:37:0,1058 +chrX 3313317 . C T, 1087.04 . AS_QUALapprox=|1097|0;AS_VarDP=0|33|0;DP=34;QUALapprox=1097;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1097,0,1097:0,0,13,20 +chrX 3313318 . G . . END=3313369 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,868 +chrX 3313370 . C T, 1111.04 . AS_QUALapprox=|1121|0;AS_VarDP=0|27|0;DP=28;QUALapprox=1121;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:1121,0,1121:0,0,14,13 +chrX 3313371 . T . . END=3313393 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,839 +chrX 3313394 . G A, 1120.04 . AS_QUALapprox=|1130|0;AS_VarDP=0|27|0;DP=27;QUALapprox=1130;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:1130,0,1130:0,0,12,15 +chrX 3313395 . G . . END=3313538 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,680 +chrX 3313539 . T C, 882.04 . AS_QUALapprox=|892|0;AS_VarDP=0|29|0;DP=30;QUALapprox=892;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:892,0,892:0,0,9,20 +chrX 3313540 . G . . END=3313808 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,630 +chrX 3313809 . G A, 913.04 . AS_QUALapprox=|923|0;AS_VarDP=0|29|0;DP=30;QUALapprox=923;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:923,0,923:0,0,19,10 +chrX 3313810 . C . . END=3314062 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,838 +chrX 3314063 . A G, 968.04 . AS_QUALapprox=|978|0;AS_VarDP=0|29|0;DP=30;QUALapprox=978;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:978,0,978:0,0,16,13 +chrX 3314064 . A . . END=3314279 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,794 +chrX 3314280 . A C, 988.04 . AS_QUALapprox=|998|0;AS_VarDP=0|29|0;DP=29;QUALapprox=998;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:998,0,998:0,0,20,9 +chrX 3314281 . T . . END=3314657 GT:DP:GQ:MIN_DP:PL 0:39:99:39:0,933 +chrX 3314658 . C A, 1017.04 . AS_QUALapprox=|1027|0;AS_VarDP=0|31|0;DP=33;QUALapprox=1027;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1027,0,1027:0,0,16,15 +chrX 3314659 . T . . END=3314880 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,754 +chrX 3314881 . C CAGAT, 799.01 . AS_QUALapprox=|809|0;AS_VarDP=0|18|0;DP=29;QUALapprox=809;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=18 GT:AD:DP:GQ:PL:SB 1:0,18,0:18:99:809,0,810:0,0,7,11 +chrX 3314882 . A . . END=3315070 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,839 +chrX 3315071 . C A, 844.04 . AS_QUALapprox=|854|0;AS_VarDP=0|26|0;DP=31;QUALapprox=854;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:854,0,854:0,0,12,14 +chrX 3315072 . G . . END=3315140 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,768 +chrX 3315141 . C T, 839.04 . AS_QUALapprox=|849|0;AS_VarDP=2|26|0;BaseQRankSum=3.742;DP=34;MQRankSum=0.000;QUALapprox=849;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;ReadPosRankSum=-1.116;VarDP=28 GT:AD:DP:GQ:PL:SB 1:2,26,0:28:99:849,0,884:2,0,11,15 +chrX 3315142 . A . . END=3315304 GT:DP:GQ:MIN_DP:PL 0:30:90:30:0,90 +chrX 3315305 . A AC, 1248.01 . AS_QUALapprox=|1258|0;AS_VarDP=0|29|0;DP=33;QUALapprox=1258;RAW_GT_COUNT=0,0,1;RAW_MQandDP=109989,33;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:1258,0,1258:0,0,11,18 +chrX 3315306 . A AGAC, 1248.01 . AS_QUALapprox=|1258|0;AS_VarDP=0|29|0;DP=32;QUALapprox=1258;RAW_GT_COUNT=0,0,1;RAW_MQandDP=106389,32;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:1258,0,1258:0,0,11,18 +chrX 3315307 . A . . END=3315339 GT:DP:GQ:MIN_DP:PL 0:22:99:22:0,577 +chrX 3315340 . A AGAT, 935.01 . AS_QUALapprox=|945|0;AS_VarDP=0|21|0;DP=24;QUALapprox=945;RAW_GT_COUNT=0,0,1;RAW_MQandDP=74718,24;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:945,0,945:0,0,10,11 +chrX 3315341 . G . . END=3315346 GT:DP:GQ:MIN_DP:PL 0:19:99:19:0,596 +chrX 3315347 . T TA, 845.01 . AS_QUALapprox=|855|0;AS_VarDP=0|19|0;DP=21;QUALapprox=855;RAW_GT_COUNT=0,0,1;RAW_MQandDP=63918,21;VarDP=19 GT:AD:DP:GQ:PL:SB 1:0,19,0:19:99:855,0,855:0,0,8,11 +chrX 3315348 . G . . END=3315372 GT:DP:GQ:MIN_DP:PL 0:15:45:15:0,45 +chrX 3315373 . A ATAGATAGATAGATAGATGAAATAGGTAGAAGGATGGATAGATGATGG, 1025.01 . AS_QUALapprox=|1035|0;AS_VarDP=0|23|0;DP=24;QUALapprox=1035;RAW_GT_COUNT=0,0,1;RAW_MQandDP=67376,24;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:1035,0,1035:0,0,12,11 +chrX 3315374 . A . . END=3315390 GT:DP:GQ:MIN_DP:PL 0:14:99:14:0,387 +chrX 3315391 . T TGATAGATAGATA, 802.01 . AS_QUALapprox=|812|0;AS_VarDP=0|19|0;DP=22;QUALapprox=812;RAW_GT_COUNT=0,0,1;RAW_MQandDP=63708,22;VarDP=19 GT:AD:DP:GQ:PL:SB 1:0,19,0:19:99:812,0,813:0,0,12,7 +chrX 3315392 . G . . END=3315467 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,397 +chrX 3315468 . T C, 1608.04 . AS_QUALapprox=|1618|0;AS_VarDP=0|38|0;DP=39;QUALapprox=1618;RAW_GT_COUNT=0,0,1;RAW_MQandDP=131215,39;VarDP=38 GT:AD:DP:GQ:PL:SB 1:0,38,0:38:99:1618,0,1618:0,0,20,18 +chrX 3315469 . T . . END=3315487 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,1081 +chrX 3315488 . A T, 1479.04 . AS_QUALapprox=|1489|0;AS_VarDP=0|34|0;DP=36;QUALapprox=1489;RAW_GT_COUNT=0,0,1;RAW_MQandDP=124771,36;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1489,0,1489:0,0,18,16 +chrX 3315489 . A . . END=3315530 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,902 +chrX 3315531 . C T, 958.04 . AS_QUALapprox=|968|0;AS_VarDP=0|29|0;DP=33;QUALapprox=968;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115038,33;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:968,0,968:0,0,14,15 +chrX 3315532 . G . . END=3315812 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,719 +chrX 3315813 . T C, 883.04 . AS_QUALapprox=|893|0;AS_VarDP=0|28|0;DP=32;QUALapprox=893;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:893,0,893:0,0,11,17 +chrX 3315814 . C . . END=3316011 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,481 +chrX 3316012 . TG T, 666.01 . AS_QUALapprox=|676|0;AS_VarDP=0|15|0;DP=17;QUALapprox=676;RAW_GT_COUNT=0,0,1;RAW_MQandDP=52452,17;VarDP=15 GT:AD:DP:GQ:PL:SB 1:0,15,0:15:99:676,0,676:0,0,6,9 +chrX 3316014 . AGTATTTGTTCTGGATCCGAGTTTAGAGGG A, 665.01 . AS_QUALapprox=|675|0;AS_VarDP=0|15|0;DP=16;QUALapprox=675;RAW_GT_COUNT=0,0,1;RAW_MQandDP=48852,16;VarDP=15 GT:AD:DP:GQ:PL:SB 1:0,15,0:15:99:675,0,675:0,0,6,9 +chrX 3316044 . A . . END=3316055 GT:DP:GQ:MIN_DP:PL 0:14:99:14:0,225 +chrX 3316056 . T C, 620.04 . AS_QUALapprox=|630|0;AS_VarDP=0|14|0;DP=14;QUALapprox=630;RAW_GT_COUNT=0,0,1;RAW_MQandDP=39652,14;VarDP=14 GT:AD:DP:GQ:PL:SB 1:0,14,0:14:99:630,0,630:0,0,5,9 +chrX 3316057 . G C, 575.04 . AS_QUALapprox=|585|0;AS_VarDP=0|13|0;DP=13;QUALapprox=585;RAW_GT_COUNT=0,0,1;RAW_MQandDP=36052,13;VarDP=13 GT:AD:DP:GQ:PL:SB 1:0,13,0:13:99:585,0,585:0,0,5,8 +chrX 3316058 . C . . END=3316059 GT:DP:GQ:MIN_DP:PL 0:13:99:13:0,225 +chrX 3316060 . GAAAAAGCACA G, 620.01 . AS_QUALapprox=|630|0;AS_VarDP=0|14|0;DP=14;QUALapprox=630;RAW_GT_COUNT=0,0,1;RAW_MQandDP=37652,14;VarDP=14 GT:AD:DP:GQ:PL:SB 1:0,14,0:14:99:630,0,630:0,0,6,8 +chrX 3316071 . C . . END=3316071 GT:DP:GQ:MIN_DP:PL 0:13:99:13:0,180 +chrX 3316072 . A ATT, 575.01 . AS_QUALapprox=|585|0;AS_VarDP=0|13|0;DP=13;QUALapprox=585;RAW_GT_COUNT=0,0,1;RAW_MQandDP=34052,13;VarDP=13 GT:AD:DP:GQ:PL:SB 1:0,13,0:13:99:585,0,585:0,0,5,8 +chrX 3316073 . C T, 575.04 . AS_QUALapprox=|585|0;AS_VarDP=0|13|0;DP=13;QUALapprox=585;RAW_GT_COUNT=0,0,1;RAW_MQandDP=34052,13;VarDP=13 GT:AD:DP:GQ:PL:SB 1:0,13,0:13:99:585,0,585:0,0,5,8 +chrX 3316074 . T . . END=3316076 GT:DP:GQ:MIN_DP:PL 0:12:99:12:0,180 +chrX 3316077 . G GA, 530.01 . AS_QUALapprox=|540|0;AS_VarDP=0|12|0;DP=12;QUALapprox=540;RAW_GT_COUNT=0,0,1;RAW_MQandDP=30452,12;VarDP=12 GT:AD:DP:GQ:PL:SB 1:0,12,0:12:99:540,0,540:0,0,5,7 +chrX 3316078 . G GGT, 530.01 . AS_QUALapprox=|540|0;AS_VarDP=0|12|0;DP=12;QUALapprox=540;RAW_GT_COUNT=0,0,1;RAW_MQandDP=30452,12;VarDP=12 GT:AD:DP:GQ:PL:SB 1:0,12,0:12:99:540,0,540:0,0,5,7 +chrX 3316079 . C . . END=3316080 GT:DP:GQ:MIN_DP:PL 0:12:99:12:0,180 +chrX 3316081 . G A, 530.04 . AS_QUALapprox=|540|0;AS_VarDP=0|12|0;DP=12;QUALapprox=540;RAW_GT_COUNT=0,0,1;RAW_MQandDP=30452,12;VarDP=12 GT:AD:DP:GQ:PL:SB 1:0,12,0:12:99:540,0,540:0,0,5,7 +chrX 3316082 . G . . END=3316083 GT:DP:GQ:MIN_DP:PL 0:12:99:12:0,180 +chrX 3316084 . C T, 563.04 . AS_QUALapprox=|573|0;AS_VarDP=0|13|0;DP=13;QUALapprox=573;RAW_GT_COUNT=0,0,1;RAW_MQandDP=32052,13;VarDP=13 GT:AD:DP:GQ:PL:SB 1:0,13,0:13:99:573,0,573:0,0,6,7 +chrX 3316085 . GC G, 563.01 . AS_QUALapprox=|573|0;AS_VarDP=0|13|0;DP=13;QUALapprox=573;RAW_GT_COUNT=0,0,1;RAW_MQandDP=32052,13;VarDP=13 GT:AD:DP:GQ:PL:SB 1:0,13,0:13:99:573,0,573:0,0,6,7 +chrX 3316087 . G . . END=3316170 GT:DP:GQ:MIN_DP:PL 0:9:99:9:0,199 +chrX 3316171 . A G, 567.04 . AS_QUALapprox=|577|0;AS_VarDP=0|17|0;DP=17;QUALapprox=577;RAW_GT_COUNT=0,0,1;RAW_MQandDP=24452,17;VarDP=17 GT:AD:DP:GQ:PL:SB 1:0,17,0:17:99:577,0,577:0,0,8,9 +chrX 3316172 . G . . END=3316234 GT:DP:GQ:MIN_DP:PL 0:15:99:15:0,372 +chrX 3316235 . AC A, 610.01 . AS_QUALapprox=|620|0;AS_VarDP=0|14|0;DP=14;QUALapprox=620;RAW_GT_COUNT=0,0,1;RAW_MQandDP=26649,14;VarDP=14 GT:AD:DP:GQ:PL:SB 1:0,14,0:14:99:620,0,620:0,0,7,7 +chrX 3316237 . C . . END=3316238 GT:DP:GQ:MIN_DP:PL 0:14:99:14:0,382 +chrX 3316239 . G T, 610.04 . AS_QUALapprox=|620|0;AS_VarDP=0|14|0;DP=14;QUALapprox=620;RAW_GT_COUNT=0,0,1;RAW_MQandDP=26649,14;VarDP=14 GT:AD:DP:GQ:PL:SB 1:0,14,0:14:99:620,0,620:0,0,7,7 +chrX 3316240 . G . . END=3316240 GT:DP:GQ:MIN_DP:PL 0:14:99:14:0,407 +chrX 3316241 . G T, 610.04 . AS_QUALapprox=|620|0;AS_VarDP=0|14|0;DP=14;QUALapprox=620;RAW_GT_COUNT=0,0,1;RAW_MQandDP=26649,14;VarDP=14 GT:AD:DP:GQ:PL:SB 1:0,14,0:14:99:620,0,620:0,0,7,7 +chrX 3316242 . A . . END=3316244 GT:DP:GQ:MIN_DP:PL 0:13:99:13:0,382 +chrX 3316245 . C G, 575.04 . AS_QUALapprox=|585|0;AS_VarDP=0|13|0;DP=13;QUALapprox=585;RAW_GT_COUNT=0,0,1;RAW_MQandDP=25049,13;VarDP=13 GT:AD:DP:GQ:PL:SB 1:0,13,0:13:99:585,0,585:0,0,7,6 +chrX 3316246 . G . . END=3316248 GT:DP:GQ:MIN_DP:PL 0:13:99:13:0,382 +chrX 3316249 . G A, 575.04 . AS_QUALapprox=|585|0;AS_VarDP=0|13|0;DP=13;QUALapprox=585;RAW_GT_COUNT=0,0,1;RAW_MQandDP=25049,13;VarDP=13 GT:AD:DP:GQ:PL:SB 1:0,13,0:13:99:585,0,585:0,0,7,6 +chrX 3316250 . C . . END=3316262 GT:DP:GQ:MIN_DP:PL 0:12:99:12:0,327 +chrX 3316263 . A G, 530.04 . AS_QUALapprox=|540|0;AS_VarDP=0|12|0;DP=12;QUALapprox=540;RAW_GT_COUNT=0,0,1;RAW_MQandDP=23449,12;VarDP=12 GT:AD:DP:GQ:PL:SB 1:0,12,0:12:99:540,0,540:0,0,7,5 +chrX 3316264 . A . . END=3316267 GT:DP:GQ:MIN_DP:PL 0:12:99:12:0,338 +chrX 3316268 . A C, 530.04 . AS_QUALapprox=|540|0;AS_VarDP=0|12|0;DP=12;QUALapprox=540;RAW_GT_COUNT=0,0,1;RAW_MQandDP=23449,12;VarDP=12 GT:AD:DP:GQ:PL:SB 1:0,12,0:12:99:540,0,540:0,0,7,5 +chrX 3316269 . G . . END=3316288 GT:DP:GQ:MIN_DP:PL 0:13:99:13:0,327 +chrX 3316289 . G A, 575.04 . AS_QUALapprox=|585|0;AS_VarDP=0|13|0;DP=13;QUALapprox=585;RAW_GT_COUNT=0,0,1;RAW_MQandDP=27049,13;VarDP=13 GT:AD:DP:GQ:PL:SB 1:0,13,0:13:99:585,0,585:0,0,7,6 +chrX 3316290 . G . . END=3316300 GT:DP:GQ:MIN_DP:PL 0:13:99:13:0,315 +chrX 3316301 . G C, 575.04 . AS_QUALapprox=|585|0;AS_VarDP=0|13|0;DP=13;QUALapprox=585;RAW_GT_COUNT=0,0,1;RAW_MQandDP=27049,13;VarDP=13 GT:AD:DP:GQ:PL:SB 1:0,13,0:13:99:585,0,585:0,0,7,6 +chrX 3316302 . A . . END=3316304 GT:DP:GQ:MIN_DP:PL 0:12:99:12:0,225 +chrX 3316305 . T C, 575.04 . AS_QUALapprox=|585|0;AS_VarDP=0|13|0;DP=13;QUALapprox=585;RAW_GT_COUNT=0,0,1;RAW_MQandDP=29049,13;VarDP=13 GT:AD:DP:GQ:PL:SB 1:0,13,0:13:99:585,0,585:0,0,7,6 +chrX 3316306 . T . . END=3316314 GT:DP:GQ:MIN_DP:PL 0:9:99:9:0,180 +chrX 3316315 . AAAATAAATAAATAAATAAAT A, 395.01 . AS_QUALapprox=|405|0;AS_VarDP=0|9|0;DP=9;QUALapprox=405;RAW_GT_COUNT=0,0,1;RAW_MQandDP=22649,9;VarDP=9 GT:AD:DP:GQ:PL:SB 1:0,9,0:9:99:405,0,405:0,0,5,4 +chrX 3316336 . A . . END=3316471 GT:DP:GQ:MIN_DP:PL 0:22:99:22:0,184 +chrX 3316472 . C T, 734.04 . AS_QUALapprox=|744|0;AS_VarDP=0|23|0;DP=26;QUALapprox=744;RAW_GT_COUNT=0,0,1;RAW_MQandDP=91681,26;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:744,0,744:0,0,11,12 +chrX 3316473 . A . . END=3316496 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,704 +chrX 3316497 . T TTAATAATAATAATAA, 797.01 . AS_QUALapprox=|807|0;AS_VarDP=0|18|0;DP=30;QUALapprox=807;RAW_GT_COUNT=0,0,1;RAW_MQandDP=106081,30;VarDP=18 GT:AD:DP:GQ:PL:SB 1:0,18,0:18:99:807,0,810:0,0,8,10 +chrX 3316498 . T . . END=3316557 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,540 +chrX 3316558 . CT C, 1064.01 . AS_QUALapprox=|1074|0;AS_VarDP=0|25|0;DP=26;QUALapprox=1074;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:1074,0,1074:0,0,9,16 +chrX 3316560 . T . . END=3316579 GT:DP:GQ:MIN_DP:PL 0:21:99:21:0,575 +chrX 3316580 . G A, 855.04 . AS_QUALapprox=|865|0;AS_VarDP=0|20|0;DP=21;QUALapprox=865;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75600,21;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:865,0,865:0,0,6,14 +chrX 3316581 . A . . END=3317682 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,570 +chrX 3317683 . C T, 1250.04 . AS_QUALapprox=|1260|0;AS_VarDP=0|39|0;DP=39;QUALapprox=1260;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140400,39;VarDP=39 GT:AD:DP:GQ:PL:SB 1:0,39,0:39:99:1260,0,1260:0,0,25,14 +chrX 3317684 . C . . END=3318865 GT:DP:GQ:MIN_DP:PL 0:37:99:37:0,823 +chrX 3318866 . TA T, 1081.01 . AS_QUALapprox=|1091|0;AS_VarDP=0|38|0;DP=43;QUALapprox=1091;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154800,43;VarDP=38 GT:AD:DP:GQ:PL:SB 1:0,38,0:38:99:1091,0,1091:0,0,13,25 +chrX 3318868 . A . . END=3318997 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,694 +chrX 3318998 . C T, 680.04 . AS_QUALapprox=|690|0;AS_VarDP=0|21|0;DP=22;QUALapprox=690;RAW_GT_COUNT=0,0,1;RAW_MQandDP=79200,22;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:690,0,690:0,0,9,12 +chrX 3318999 . G . . END=3319043 GT:DP:GQ:MIN_DP:PL 0:21:99:21:0,545 +chrX 3319044 . T G, 680.04 . AS_QUALapprox=|690|0;AS_VarDP=0|21|0;DP=21;QUALapprox=690;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75600,21;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:690,0,690:0,0,10,11 +chrX 3319045 . G . . END=3319054 GT:DP:GQ:MIN_DP:PL 0:21:99:21:0,620 +chrX 3319055 . G T, 1014.04 . AS_QUALapprox=|1024|0;AS_VarDP=0|23|0;DP=23;QUALapprox=1024;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:1024,0,1024:0,0,10,13 +chrX 3319056 . G C, 1014.04 . AS_QUALapprox=|1024|0;AS_VarDP=0|23|0;DP=23;QUALapprox=1024;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:1024,0,1024:0,0,10,13 +chrX 3319057 . C . . END=3319062 GT:DP:GQ:MIN_DP:PL 0:22:99:22:0,690 +chrX 3319063 . A G, 980.04 . AS_QUALapprox=|990|0;AS_VarDP=0|22|0;DP=22;QUALapprox=990;RAW_GT_COUNT=0,0,1;RAW_MQandDP=79200,22;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:990,0,990:0,0,11,11 +chrX 3319064 . T . . END=3319072 GT:DP:GQ:MIN_DP:PL 0:22:99:22:0,576 +chrX 3319073 . A T, 973.04 . AS_QUALapprox=|983|0;AS_VarDP=0|23|0;DP=23;QUALapprox=983;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:983,0,983:0,0,10,13 +chrX 3319074 . G . . END=3319185 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,580 +chrX 3319186 . T C, 778.04 . AS_QUALapprox=|788|0;AS_VarDP=0|27|0;DP=27;QUALapprox=788;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:788,0,788:0,0,13,14 +chrX 3319187 . G . . END=3319542 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,630 +chrX 3319543 . C T, 1166.04 . AS_QUALapprox=|1176|0;AS_VarDP=0|37|0;DP=37;QUALapprox=1176;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133200,37;VarDP=37 GT:AD:DP:GQ:PL:SB 1:0,37,0:37:99:1176,0,1176:0,0,22,15 +chrX 3319544 . A . . END=3319682 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,1028 +chrX 3319683 . G A, 1015.04 . AS_QUALapprox=|1025|0;AS_VarDP=0|31|0;DP=32;QUALapprox=1025;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1025,0,1025:0,0,17,14 +chrX 3319684 . G . . END=3320125 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,610 +chrX 3320126 . T G, 958.04 . AS_QUALapprox=|968|0;AS_VarDP=0|29|0;DP=29;QUALapprox=968;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:968,0,968:0,0,16,13 +chrX 3320127 . G . . END=3320691 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,670 +chrX 3320692 . G A, 960.04 . AS_QUALapprox=|970|0;AS_VarDP=0|31|0;DP=34;QUALapprox=970;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:970,0,970:0,0,18,13 +chrX 3320693 . A . . END=3321503 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,784 +chrX 3321504 . C T, 998.04 . AS_QUALapprox=|1008|0;AS_VarDP=0|30|0;DP=30;QUALapprox=1008;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:1008,0,1008:0,0,19,11 +chrX 3321505 . C . . END=3322301 GT:DP:GQ:MIN_DP:PL 0:37:99:37:0,624 +chrX 3322302 . G A, 576.04 . AS_QUALapprox=|586|0;AS_VarDP=0|18|0;DP=19;QUALapprox=586;RAW_GT_COUNT=0,0,1;RAW_MQandDP=68400,19;VarDP=18 GT:AD:DP:GQ:PL:SB 1:0,18,0:18:99:586,0,586:0,0,10,8 +chrX 3322303 . C . . END=3323008 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,625 +chrX 3323009 . G A, 1018.04 . AS_QUALapprox=|1028|0;AS_VarDP=0|31|0;DP=33;QUALapprox=1028;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1028,0,1028:0,0,16,15 +chrX 3323010 . G . . END=3323214 GT:DP:GQ:MIN_DP:PL 0:37:99:37:0,968 +chrX 3323215 . T C, 958.04 . AS_QUALapprox=|968|0;AS_VarDP=0|29|0;DP=30;QUALapprox=968;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:968,0,968:0,0,10,19 +chrX 3323216 . A . . END=3323242 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,923 +chrX 3323243 . A G, 928.04 . AS_QUALapprox=|938|0;AS_VarDP=0|28|0;DP=29;QUALapprox=938;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:938,0,938:0,0,8,20 +chrX 3323244 . C . . END=3323275 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,775 +chrX 3323276 . T C, 792.04 . AS_QUALapprox=|802|0;AS_VarDP=0|27|0;DP=28;QUALapprox=802;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:802,0,802:0,0,10,17 +chrX 3323277 . G . . END=3323749 GT:DP:GQ:MIN_DP:PL 0:39:99:39:0,735 +chrX 3323750 . G A, 1211.04 . AS_QUALapprox=|1221|0;AS_VarDP=0|38|0;DP=39;QUALapprox=1221;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140400,39;VarDP=38 GT:AD:DP:GQ:PL:SB 1:0,38,0:38:99:1221,0,1221:0,0,16,22 +chrX 3323751 . T . . END=3325467 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,605 +chrX 3325468 . ATC A, 1912.01 . AS_QUALapprox=|1922|0;AS_VarDP=0|43|0;DP=43;QUALapprox=1922;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154800,43;VarDP=43 GT:AD:DP:GQ:PL:SB 1:0,43,0:43:99:1922,0,1922:0,0,22,21 +chrX 3325471 . T . . END=3325769 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,279 +chrX 3325770 . G A, 780.04 . AS_QUALapprox=|790|0;AS_VarDP=0|26|0;DP=28;QUALapprox=790;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:790,0,790:0,0,8,18 +chrX 3325771 . T . . END=3325804 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,546 +chrX 3325805 . C CATATATTTATAAATAAATATATAATAATATATTTATAAATAAATATATAATA, 1594.01 . AS_QUALapprox=|1604|0;AS_VarDP=0|36|0;DP=41;QUALapprox=1604;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140342,41;VarDP=36 GT:AD:DP:GQ:PL:SB 1:0,36,0:36:99:1604,0,1607:0,0,21,15 +chrX 3325806 . A . . END=3325846 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,743 +chrX 3325847 . A AATAATTTATAATTATAATTTATAATATATAATTTATAATT, 1076.01 . AS_QUALapprox=|1086|0;AS_VarDP=0|25|0;DP=39;QUALapprox=1086;RAW_GT_COUNT=0,0,1;RAW_MQandDP=139104,39;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:1086,0,1092:0,0,13,12 +chrX 3325848 . A . . END=3326003 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,715 +chrX 3326004 . T C, 1220.04 . AS_QUALapprox=|1230|0;AS_VarDP=2|29|0;BaseQRankSum=2.652;DP=33;MQRankSum=0.000;QUALapprox=1230;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;ReadPosRankSum=1.706;VarDP=31 GT:AD:DP:GQ:PL:SB 1:2,29,0:31:99:1230,0,1249:2,0,16,13 +chrX 3326005 . T . . END=3326024 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,840 +chrX 3326025 . T TTA, 1403.01 . AS_QUALapprox=|1413|0;AS_VarDP=0|33|0;DP=33;QUALapprox=1413;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1413,0,1413:0,0,17,16 +chrX 3326026 . T . . END=3326143 GT:DP:GQ:MIN_DP:PL 0:40:99:40:0,124 +chrX 3326144 . G . . END=3326144 GT:DP:GQ:MIN_DP:PL 0:43:0:43:0,0 +chrX 3326145 . T . . END=3326167 GT:DP:GQ:MIN_DP:PL 0:49:99:49:0,150 +chrX 3326168 . T . . END=3326168 GT:DP:GQ:MIN_DP:PL 0:53:0:53:0,0 +chrX 3326169 . T . . END=3326254 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,471 +chrX 3326255 . G A, 1050.04 . AS_QUALapprox=|1060|0;AS_VarDP=0|24|0;DP=24;QUALapprox=1060;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:1060,0,1060:0,0,13,11 +chrX 3326256 . G . . END=3326295 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,669 +chrX 3326296 . C A, 1099.04 . AS_QUALapprox=|1109|0;AS_VarDP=0|26|0;DP=26;QUALapprox=1109;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:1109,0,1109:0,0,14,12 +chrX 3326297 . A . . END=3326453 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,501 +chrX 3326454 . G A, 1053.04 . AS_QUALapprox=|1063|0;AS_VarDP=0|25|0;DP=25;QUALapprox=1063;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:1063,0,1063:0,0,10,15 +chrX 3326455 . T . . END=3326485 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,722 +chrX 3326486 . T C, 1173.04 . AS_QUALapprox=|1183|0;AS_VarDP=0|27|0;DP=27;QUALapprox=1183;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:1183,0,1183:0,0,10,17 +chrX 3326487 . G . . END=3326527 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,698 +chrX 3326528 . C A, 986.04 . AS_QUALapprox=|996|0;AS_VarDP=0|25|0;DP=25;QUALapprox=996;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:996,0,996:0,0,12,13 +chrX 3326529 . A . . END=3327124 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,491 +chrX 3327125 . G A, 779.04 . AS_QUALapprox=|789|0;AS_VarDP=0|25|0;DP=25;QUALapprox=789;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:789,0,789:0,0,13,12 +chrX 3327126 . T . . END=3327162 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,606 +chrX 3327163 . A G, 630.04 . AS_QUALapprox=|640|0;AS_VarDP=0|19|0;DP=21;QUALapprox=640;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75600,21;VarDP=19 GT:AD:DP:GQ:PL:SB 1:0,19,0:19:99:640,0,640:0,0,6,13 +chrX 3327164 . T . . END=3327213 GT:DP:GQ:MIN_DP:PL 0:20:99:20:0,586 +chrX 3327214 . GC G, 597.01 . AS_QUALapprox=|607|0;AS_VarDP=0|17|0;DP=20;QUALapprox=607;RAW_GT_COUNT=0,0,1;RAW_MQandDP=72000,20;VarDP=17 GT:AD:DP:GQ:PL:SB 1:0,17,0:17:99:607,0,607:0,0,8,9 +chrX 3327216 . C . . END=3327720 GT:DP:GQ:MIN_DP:PL 0:21:99:21:0,467 +chrX 3327721 . A G, 819.04 . AS_QUALapprox=|829|0;AS_VarDP=0|25|0;DP=28;QUALapprox=829;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:829,0,829:0,0,12,13 +chrX 3327722 . C . . END=3329152 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,154 +chrX 3329153 . AGAAGGAAG A, 395.01 . AS_QUALapprox=|405|0;AS_VarDP=0|9|0;DP=13;QUALapprox=405;RAW_GT_COUNT=0,0,1;RAW_MQandDP=46800,13;VarDP=9 GT:AD:DP:GQ:PL:SB 1:0,9,0:9:99:405,0,405:0,0,5,4 +chrX 3329162 . G . . END=3329202 GT:DP:GQ:MIN_DP:PL 0:12:99:12:0,139 +chrX 3329203 . T A, 405.04 . AS_QUALapprox=|415|0;AS_VarDP=0|12|0;DP=12;QUALapprox=415;RAW_GT_COUNT=0,0,1;RAW_MQandDP=42516,12;VarDP=12 GT:AD:DP:GQ:PL:SB 1:0,12,0:12:99:415,0,415:0,0,6,6 +chrX 3329204 . G . . END=3329318 GT:DP:GQ:MIN_DP:PL 0:11:99:11:0,125 +chrX 3329319 . A AGAAGGAAGGAATGAAGGAAAAAAGAAG, 788.01 . AS_QUALapprox=|798|0;AS_VarDP=0|18|0;DP=20;QUALapprox=798;RAW_GT_COUNT=0,0,1;RAW_MQandDP=71425,20;VarDP=18 GT:AD:DP:GQ:PL:SB 1:0,18,0:18:99:798,0,798:0,0,11,7 +chrX 3329320 . G . . END=3329442 GT:DP:GQ:MIN_DP:PL 0:19:99:19:0,232 +chrX 3329443 . G . . END=3329443 GT:DP:GQ:MIN_DP:PL 0:24:0:24:0,0 +chrX 3329444 . G . . END=3329453 GT:DP:GQ:MIN_DP:PL 0:40:99:40:0,1089 +chrX 3329454 . A AAGATGAAGGAAGGGGAGAGAAGGAAGGAAGGAAGGC, 1297.01 . AS_QUALapprox=|1307|0;AS_VarDP=0|30|0;DP=41;QUALapprox=1307;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147362,41;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:1307,0,1315:0,0,10,20 +chrX 3329455 . A . . END=3329584 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,308 +chrX 3329585 . G A, 848.04 . AS_QUALapprox=|858|0;AS_VarDP=0|27|0;DP=27;QUALapprox=858;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:858,0,858:0,0,17,10 +chrX 3329586 . T . . END=3332307 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,477 +chrX 3332308 . C G, 793.04 . AS_QUALapprox=|803|0;AS_VarDP=0|26|0;DP=28;QUALapprox=803;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100225,28;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:803,0,803:0,0,9,17 +chrX 3332309 . A . . END=3333300 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,219 +chrX 3333301 . T . . END=3333301 GT:DP:GQ:MIN_DP:PL 0:23:15:23:0,15 +chrX 3333302 . C CAAAAAAAAAA, 234.01 . AS_QUALapprox=|244|0;AS_VarDP=0|9|0;DP=18;QUALapprox=244;RAW_GT_COUNT=0,0,1;RAW_MQandDP=50926,18;VarDP=9 GT:AD:DP:GQ:PL:SB 1:0,9,0:9:99:244,0,245:0,0,0,9 +chrX 3333303 . A . . END=3333391 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,402 +chrX 3333392 . A T, 784.04 . AS_QUALapprox=|794|0;AS_VarDP=1|25|0;BaseQRankSum=1.941;DP=29;MQRankSum=0.000;QUALapprox=794;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;ReadPosRankSum=-1.467;VarDP=26 GT:AD:DP:GQ:PL:SB 1:1,25,0:26:99:794,0,818:1,0,17,8 +chrX 3333393 . T . . END=3335347 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,532 +chrX 3335348 . T C, 813.04 . AS_QUALapprox=|823|0;AS_VarDP=0|27|0;DP=27;QUALapprox=823;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:823,0,823:0,0,13,14 +chrX 3335349 . A . . END=3336086 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,597 +chrX 3336087 . T C, 897.04 . AS_QUALapprox=|907|0;AS_VarDP=0|29|0;DP=29;QUALapprox=907;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:907,0,907:0,0,10,19 +chrX 3336088 . G . . END=3336996 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,561 +chrX 3336997 . C G, 674.04 . AS_QUALapprox=|684|0;AS_VarDP=0|21|0;DP=21;QUALapprox=684;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75600,21;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:684,0,684:0,0,8,13 +chrX 3336998 . A . . END=3339303 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,515 +chrX 3339304 . A G, 1116.04 . AS_QUALapprox=|1126|0;AS_VarDP=0|35|0;DP=35;QUALapprox=1126;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,35,0:35:99:1126,0,1126:0,0,20,15 +chrX 3339305 . C . . END=3341133 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,180 +chrX 3341134 . T . . END=3341135 GT:DP:GQ:MIN_DP:PL 0:18:0:18:0,0 +chrX 3341136 . T . . END=3341138 GT:DP:GQ:MIN_DP:PL 0:19:99:19:0,270 +chrX 3341139 . A . . END=3341139 GT:DP:GQ:MIN_DP:PL 0:15:0:15:0,0 +chrX 3341140 . T . . END=3341140 GT:DP:GQ:MIN_DP:PL 0:17:99:17:0,315 +chrX 3341141 . T . . END=3341143 GT:DP:GQ:MIN_DP:PL 0:17:0:17:0,0 +chrX 3341144 . A . . END=3341144 GT:DP:GQ:MIN_DP:PL 0:19:99:19:0,315 +chrX 3341145 . C . . END=3341145 GT:DP:GQ:MIN_DP:PL 0:16:0:16:0,0 +chrX 3341146 . A . . END=3341148 GT:DP:GQ:MIN_DP:PL 0:16:99:16:0,270 +chrX 3341149 . T . . END=3341151 GT:DP:GQ:MIN_DP:PL 0:12:0:12:0,0 +chrX 3341152 . T . . END=3341154 GT:DP:GQ:MIN_DP:PL 0:15:99:15:0,270 +chrX 3341155 . A . . END=3341155 GT:DP:GQ:MIN_DP:PL 0:12:0:12:0,0 +chrX 3341156 . T . . END=3341157 GT:DP:GQ:MIN_DP:PL 0:12:20:11:0,20 +chrX 3341158 . T . . END=3341158 GT:DP:GQ:MIN_DP:PL 0:12:10:12:0,10 +chrX 3341159 . T . . END=3341171 GT:DP:GQ:MIN_DP:PL 0:12:25:11:0,25 +chrX 3341172 . C . . END=3341172 GT:DP:GQ:MIN_DP:PL 0:10:10:10:0,10 +chrX 3341173 . A . . END=3341426 GT:DP:GQ:MIN_DP:PL 0:4:35:3:0,35 +chrX 3341427 . G . . END=3341427 GT:DP:GQ:MIN_DP:PL 0:3:0:3:0,0 +chrX 3341428 . T . . END=3341457 GT:DP:GQ:MIN_DP:PL 0:2:35:1:0,35 +chrX 3341458 . G . . END=3341458 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3341459 . T . . END=3341459 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3341460 . A . . END=3341460 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3341461 . A . . END=3341461 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3341462 . T . . END=3341462 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3341463 . A . . END=3341488 GT:DP:GQ:MIN_DP:PL 0:3:35:1:0,35 +chrX 3341489 . G . . END=3341489 GT:DP:GQ:MIN_DP:PL 0:6:0:6:0,0 +chrX 3341490 . T . . END=3341598 GT:DP:GQ:MIN_DP:PL 0:7:90:7:0,90 +chrX 3341599 . T . . END=3341607 GT:DP:GQ:MIN_DP:PL 0:10:0:10:0,0 +chrX 3341608 . T . . END=3341980 GT:DP:GQ:MIN_DP:PL 0:22:99:22:0,282 +chrX 3341981 . T C, 1066.04 . AS_QUALapprox=|1076|0;AS_VarDP=0|33|0;DP=33;QUALapprox=1076;RAW_GT_COUNT=0,0,1;RAW_MQandDP=116564,33;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1076,0,1076:0,0,15,18 +chrX 3341982 . G . . END=3342015 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,945 +chrX 3342016 . C CAACAATGATAGACTGGAAA, 1294.01 . AS_QUALapprox=|1304|0;AS_VarDP=0|29|0;DP=31;QUALapprox=1304;RAW_GT_COUNT=0,0,1;RAW_MQandDP=109364,31;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:1304,0,1305:0,0,14,15 +chrX 3342017 . A . . END=3342463 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,402 +chrX 3342464 . G T, 1012.04 . AS_QUALapprox=|1022|0;AS_VarDP=0|30|0;DP=30;QUALapprox=1022;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:1022,0,1022:0,0,14,16 +chrX 3342465 . T . . END=3344094 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,530 +chrX 3344095 . C G, 884.04 . AS_QUALapprox=|894|0;AS_VarDP=0|26|0;DP=28;QUALapprox=894;RAW_GT_COUNT=0,0,1;RAW_MQandDP=92654,28;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:894,0,894:0,0,16,10 +chrX 3344096 . G . . END=3345489 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,655 +chrX 3345490 . G A, 1072.04 . AS_QUALapprox=|1082|0;AS_VarDP=1|34|0;BaseQRankSum=-0.326;DP=35;MQRankSum=0.000;QUALapprox=1082;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;ReadPosRankSum=1.189;VarDP=35 GT:AD:DP:GQ:PL:SB 1:1,34,0:35:99:1082,0,1117:1,0,19,15 +chrX 3345491 . G . . END=3345648 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,873 +chrX 3345649 . T C, 1198.04 . AS_QUALapprox=|1208|0;AS_VarDP=0|38|0;DP=38;QUALapprox=1208;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;VarDP=38 GT:AD:DP:GQ:PL:SB 1:0,38,0:38:99:1208,0,1208:0,0,20,18 +chrX 3345650 . G . . END=3345703 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,1087 +chrX 3345704 . G A, 1055.04 . AS_QUALapprox=|1065|0;AS_VarDP=0|35|0;DP=36;QUALapprox=1065;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129600,36;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,35,0:35:99:1065,0,1065:0,0,16,19 +chrX 3345705 . G . . END=3346098 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,665 +chrX 3346099 . C A, 854.04 . AS_QUALapprox=|864|0;AS_VarDP=1|26|0;BaseQRankSum=2.808;DP=27;MQRankSum=0.000;QUALapprox=864;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;ReadPosRankSum=1.092;VarDP=27 GT:AD:DP:GQ:PL:SB 1:1,26,0:27:99:864,0,874:0,1,15,11 +chrX 3346100 . G . . END=3346413 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,670 +chrX 3346414 . G A, 867.04 . AS_QUALapprox=|877|0;AS_VarDP=0|29|0;DP=29;QUALapprox=877;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:877,0,877:0,0,15,14 +chrX 3346415 . C . . END=3347101 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,695 +chrX 3347102 . A G, 790.04 . AS_QUALapprox=|800|0;AS_VarDP=0|24|0;DP=26;QUALapprox=800;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:800,0,800:0,0,10,14 +chrX 3347103 . G . . END=3348006 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,541 +chrX 3348007 . A ATT, 881.01 . AS_QUALapprox=|891|0;AS_VarDP=0|26|0;DP=28;QUALapprox=891;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:891,0,891:0,0,10,16 +chrX 3348008 . T . . END=3348093 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,760 +chrX 3348094 . A C, 1048.04 . AS_QUALapprox=|1058|0;AS_VarDP=0|31|0;DP=31;QUALapprox=1058;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1058,0,1058:0,0,16,15 +chrX 3348095 . C . . END=3349009 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,690 +chrX 3349010 . C T, 1281.04 . AS_QUALapprox=|1291|0;AS_VarDP=0|38|0;DP=39;QUALapprox=1291;RAW_GT_COUNT=0,0,1;RAW_MQandDP=138736,39;VarDP=38 GT:AD:DP:GQ:PL:SB 1:0,38,0:38:99:1291,0,1291:0,0,17,21 +chrX 3349011 . G . . END=3349191 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,788 +chrX 3349192 . TTGAA T, 1161.01 . AS_QUALapprox=|1171|0;AS_VarDP=0|26|0;DP=33;QUALapprox=1171;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:1171,0,1171:0,0,10,16 +chrX 3349197 . T . . END=3350538 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,526 +chrX 3350539 . T G, 784.04 . AS_QUALapprox=|794|0;AS_VarDP=0|24|0;DP=26;QUALapprox=794;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:794,0,794:0,0,11,13 +chrX 3350540 . T . . END=3350694 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,360 +chrX 3350695 . T TAC, 816.01 . AS_QUALapprox=|826|0;AS_VarDP=0|19|0;DP=19;QUALapprox=826;RAW_GT_COUNT=0,0,1;RAW_MQandDP=64400,19;VarDP=19 GT:AD:DP:GQ:PL:SB 1:0,19,0:19:99:826,0,826:0,0,12,7 +chrX 3350696 . A . . END=3350696 GT:DP:GQ:MIN_DP:PL 0:19:99:19:0,620 +chrX 3350697 . T TATATATATATAC, 929.01 . AS_QUALapprox=|939|0;AS_VarDP=0|22|0;DP=22;QUALapprox=939;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75200,22;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:939,0,939:0,0,14,8 +chrX 3350698 . A . . END=3350717 GT:DP:GQ:MIN_DP:PL 0:21:99:21:0,590 +chrX 3350718 . A G, 952.04 . AS_QUALapprox=|962|0;AS_VarDP=0|24|0;DP=25;QUALapprox=962;RAW_GT_COUNT=0,0,1;RAW_MQandDP=88000,25;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:962,0,963:0,0,16,8 +chrX 3350719 . G . . END=3350759 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,645 +chrX 3350760 . G C, 977.04 . AS_QUALapprox=|987|0;AS_VarDP=0|31|0;DP=31;QUALapprox=987;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:987,0,987:0,0,18,13 +chrX 3350761 . C . . END=3351012 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,857 +chrX 3351013 . G A, 1181.04 . AS_QUALapprox=|1191|0;AS_VarDP=0|36|0;DP=36;QUALapprox=1191;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129600,36;VarDP=36 GT:AD:DP:GQ:PL:SB 1:0,36,0:36:99:1191,0,1191:0,0,17,19 +chrX 3351014 . A . . END=3351937 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,775 +chrX 3351938 . T C, 789.04 . AS_QUALapprox=|799|0;AS_VarDP=0|24|0;DP=24;QUALapprox=799;RAW_GT_COUNT=0,0,1;RAW_MQandDP=74625,24;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:799,0,799:0,0,9,15 +chrX 3351939 . A . . END=3352580 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,423 +chrX 3352581 . G A, 755.04 . AS_QUALapprox=|765|0;AS_VarDP=0|17|0;DP=18;QUALapprox=765;RAW_GT_COUNT=0,0,1;RAW_MQandDP=33898,18;VarDP=17 GT:AD:DP:GQ:PL:SB 1:0,17,0:17:99:765,0,765:0,0,8,9 +chrX 3352582 . T . . END=3352582 GT:DP:GQ:MIN_DP:PL 0:17:99:17:0,591 +chrX 3352583 . T G, 755.04 . AS_QUALapprox=|765|0;AS_VarDP=0|17|0;DP=17;QUALapprox=765;RAW_GT_COUNT=0,0,1;RAW_MQandDP=31194,17;VarDP=17 GT:AD:DP:GQ:PL:SB 1:0,17,0:17:99:765,0,765:0,0,8,9 +chrX 3352584 . A . . END=3352584 GT:DP:GQ:MIN_DP:PL 0:17:99:17:0,591 +chrX 3352585 . T C, 755.04 . AS_QUALapprox=|765|0;AS_VarDP=0|17|0;DP=17;QUALapprox=765;RAW_GT_COUNT=0,0,1;RAW_MQandDP=31194,17;VarDP=17 GT:AD:DP:GQ:PL:SB 1:0,17,0:17:99:765,0,765:0,0,8,9 +chrX 3352586 . A . . END=3352589 GT:DP:GQ:MIN_DP:PL 0:16:99:16:0,516 +chrX 3352590 . A G, 745.04 . AS_QUALapprox=|755|0;AS_VarDP=0|17|0;DP=18;QUALapprox=755;RAW_GT_COUNT=0,0,1;RAW_MQandDP=36794,18;VarDP=17 GT:AD:DP:GQ:PL:SB 1:0,17,0:17:99:755,0,755:0,0,9,8 +chrX 3352591 . T . . END=3352829 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,571 +chrX 3352830 . G T, 997.04 . AS_QUALapprox=|1007|0;AS_VarDP=0|31|0;DP=33;QUALapprox=1007;RAW_GT_COUNT=0,0,1;RAW_MQandDP=117450,33;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1007,0,1007:0,0,13,18 +chrX 3352831 . G . . END=3353807 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,411 +chrX 3353808 . C T, 1310.04 . AS_QUALapprox=|1320|0;AS_VarDP=0|40|0;DP=41;QUALapprox=1320;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147600,41;VarDP=40 GT:AD:DP:GQ:PL:SB 1:0,40,0:40:99:1320,0,1320:0,0,17,23 +chrX 3353809 . T . . END=3354522 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,833 +chrX 3354523 . G A, 854.04 . AS_QUALapprox=|864|0;AS_VarDP=1|27|0;BaseQRankSum=-0.306;DP=31;MQRankSum=0.000;QUALapprox=864;RAW_GT_COUNT=0,0,1;RAW_MQandDP=110601,31;ReadPosRankSum=-1.238;VarDP=28 GT:AD:DP:GQ:PL:SB 1:1,27,0:28:99:864,0,899:1,0,12,15 +chrX 3354524 . T . . END=3355505 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,540 +chrX 3355506 . A ATAATTAT, 684.01 . AS_QUALapprox=|1030|0;AS_VarDP=0|24|0;DP=29;QUALapprox=1030;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:1030,0,853:0,0,6,6 +chrX 3355507 . T . . END=3355518 GT:DP:GQ:MIN_DP:PL 0:28:59:28:0,59 +chrX 3355519 . T . . END=3355520 GT:DP:GQ:MIN_DP:PL 0:26:0:26:0,0 +chrX 3355521 . A . . END=3355554 GT:DP:GQ:MIN_DP:PL 0:36:78:36:0,78 +chrX 3355555 . A G,ATCATCTTTAATAATATTATAATTATTAATTATTAATG, 1031.04 . AS_QUALapprox=|1041|75|0;AS_VarDP=0|12|0|0;DP=40;QUALapprox=1041;RAW_GT_COUNT=0,0,1;RAW_MQandDP=144000,40;VarDP=12 GT:AD:DP:GQ:PL:SB 1:0,12,0,0:12:99:1041,0,966,1008:0,0,6,6 +chrX 3355556 . T . . END=3356166 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,793 +chrX 3356167 . T A, 1231.04 . AS_QUALapprox=|1241|0;AS_VarDP=0|37|0;DP=39;QUALapprox=1241;RAW_GT_COUNT=0,0,1;RAW_MQandDP=139825,39;VarDP=37 GT:AD:DP:GQ:PL:SB 1:0,37,0:37:99:1241,0,1241:0,0,23,14 +chrX 3356168 . G . . END=3356540 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,784 +chrX 3356541 . T C, 871.04 . AS_QUALapprox=|881|0;AS_VarDP=0|26|0;DP=28;QUALapprox=881;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:881,0,881:0,0,12,14 +chrX 3356542 . C . . END=3356622 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,823 +chrX 3356623 . T G, 893.04 . AS_QUALapprox=|903|0;AS_VarDP=0|28|0;DP=29;QUALapprox=903;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:903,0,903:0,0,14,14 +chrX 3356624 . C . . END=3357724 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,557 +chrX 3357725 . C T, 893.04 . AS_QUALapprox=|903|0;AS_VarDP=0|28|0;DP=29;QUALapprox=903;RAW_GT_COUNT=0,0,1;RAW_MQandDP=103716,29;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:903,0,903:0,0,17,11 +chrX 3357726 . G . . END=3357964 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,695 +chrX 3357965 . G A, 908.04 . AS_QUALapprox=|918|0;AS_VarDP=0|28|0;DP=28;QUALapprox=918;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:918,0,918:0,0,12,16 +chrX 3357966 . T . . END=3358176 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,546 +chrX 3358177 . C T, 546.04 . AS_QUALapprox=|556|0;AS_VarDP=0|16|0;DP=20;QUALapprox=556;RAW_GT_COUNT=0,0,1;RAW_MQandDP=72000,20;VarDP=16 GT:AD:DP:GQ:PL:SB 1:0,16,0:16:99:556,0,556:0,0,8,8 +chrX 3358178 . T . . END=3358467 GT:DP:GQ:MIN_DP:PL 0:22:99:22:0,556 +chrX 3358468 . G A, 1037.04 . AS_QUALapprox=|1047|0;AS_VarDP=0|32|0;DP=34;QUALapprox=1047;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1047,0,1047:0,0,23,9 +chrX 3358469 . T . . END=3358607 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,882 +chrX 3358608 . G A, 1052.04 . AS_QUALapprox=|1062|0;AS_VarDP=0|33|0;DP=35;QUALapprox=1062;RAW_GT_COUNT=0,0,1;RAW_MQandDP=124632,35;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1062,0,1062:0,0,13,20 +chrX 3358609 . T . . END=3358998 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,753 +chrX 3358999 . G A, 1111.04 . AS_QUALapprox=|1121|0;AS_VarDP=0|35|0;DP=36;QUALapprox=1121;RAW_GT_COUNT=0,0,1;RAW_MQandDP=110865,36;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,35,0:35:99:1121,0,1121:0,0,19,16 +chrX 3359000 . T . . END=3360208 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,597 +chrX 3360209 . A T, 948.04 . AS_QUALapprox=|958|0;AS_VarDP=0|29|0;DP=29;QUALapprox=958;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104281,29;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:958,0,958:0,0,16,13 +chrX 3360210 . C . . END=3360510 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,630 +chrX 3360511 . G A, 1087.04 . AS_QUALapprox=|1097|0;AS_VarDP=0|33|0;DP=33;QUALapprox=1097;RAW_GT_COUNT=0,0,1;RAW_MQandDP=110911,33;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1097,0,1097:0,0,12,21 +chrX 3360512 . A . . END=3360696 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,839 +chrX 3360697 . G C, 881.04 . AS_QUALapprox=|891|0;AS_VarDP=0|28|0;DP=29;QUALapprox=891;RAW_GT_COUNT=0,0,1;RAW_MQandDP=88870,29;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:891,0,891:0,0,13,15 +chrX 3360698 . G . . END=3361117 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,798 +chrX 3361118 . C T, 992.04 . AS_QUALapprox=|1002|0;AS_VarDP=0|32|0;DP=35;QUALapprox=1002;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1002,0,1002:0,0,13,19 +chrX 3361119 . C . . END=3361199 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,913 +chrX 3361200 . T A, 998.04 . AS_QUALapprox=|1008|0;AS_VarDP=0|29|0;DP=31;QUALapprox=1008;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:1008,0,1008:0,0,12,17 +chrX 3361201 . T . . END=3361734 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,674 +chrX 3361735 . G A, 1072.04 . AS_QUALapprox=|1082|0;AS_VarDP=0|32|0;DP=32;QUALapprox=1082;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1082,0,1082:0,0,13,19 +chrX 3361736 . C . . END=3361782 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,958 +chrX 3361783 . C T, 1047.04 . AS_QUALapprox=|1057|0;AS_VarDP=0|31|0;DP=32;QUALapprox=1057;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1057,0,1057:0,0,12,19 +chrX 3361784 . G . . END=3361899 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,967 +chrX 3361900 . A G, 1048.04 . AS_QUALapprox=|1058|0;AS_VarDP=0|31|0;DP=32;QUALapprox=1058;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1058,0,1058:0,0,17,14 +chrX 3361901 . C . . END=3361959 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,882 +chrX 3361960 . C A, 790.04 . AS_QUALapprox=|800|0;AS_VarDP=0|24|0;DP=30;QUALapprox=800;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:800,0,1009:0,0,12,11 +chrX 3361961 . A . . END=3362071 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,833 +chrX 3362072 . A G, 1121.04 . AS_QUALapprox=|1131|0;AS_VarDP=0|34|0;DP=34;QUALapprox=1131;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1131,0,1131:0,0,16,18 +chrX 3362073 . C . . END=3363307 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,555 +chrX 3363308 . G A, 1260.04 . AS_QUALapprox=|1270|0;AS_VarDP=0|39|0;DP=40;QUALapprox=1270;RAW_GT_COUNT=0,0,1;RAW_MQandDP=144000,40;VarDP=39 GT:AD:DP:GQ:PL:SB 1:0,39,0:39:99:1270,0,1270:0,0,18,21 +chrX 3363309 . G . . END=3363477 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,933 +chrX 3363478 . C G, 1003.04 . AS_QUALapprox=|1013|0;AS_VarDP=0|30|0;DP=31;QUALapprox=1013;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:1013,0,1013:0,0,12,18 +chrX 3363479 . A . . END=3364022 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,661 +chrX 3364023 . G A, 878.04 . AS_QUALapprox=|888|0;AS_VarDP=0|20|0;DP=20;QUALapprox=888;RAW_GT_COUNT=0,0,1;RAW_MQandDP=72000,20;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:888,0,888:0,0,15,5 +chrX 3364024 . A . . END=3364026 GT:DP:GQ:MIN_DP:PL 0:19:99:19:0,651 +chrX 3364027 . G C, 870.04 . AS_QUALapprox=|880|0;AS_VarDP=0|20|0;DP=20;QUALapprox=880;RAW_GT_COUNT=0,0,1;RAW_MQandDP=72000,20;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:880,0,880:0,0,14,6 +chrX 3364028 . T . . END=3364217 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,635 +chrX 3364218 . C A, 956.04 . AS_QUALapprox=|966|0;AS_VarDP=0|30|0;DP=31;QUALapprox=966;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:966,0,966:0,0,18,12 +chrX 3364219 . T . . END=3364358 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,753 +chrX 3364359 . G A, 1052.04 . AS_QUALapprox=|1062|0;AS_VarDP=0|32|0;DP=34;QUALapprox=1062;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1062,0,1062:0,0,14,18 +chrX 3364360 . T . . END=3364712 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,848 +chrX 3364713 . G A, 1092.04 . AS_QUALapprox=|1102|0;AS_VarDP=0|25|0;DP=27;QUALapprox=1102;RAW_GT_COUNT=0,0,1;RAW_MQandDP=96625,27;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:1102,0,1102:0,0,15,10 +chrX 3364714 . G . . END=3364714 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,829 +chrX 3364715 . G C, 1092.04 . AS_QUALapprox=|1102|0;AS_VarDP=0|25|0;DP=25;QUALapprox=1102;RAW_GT_COUNT=0,0,1;RAW_MQandDP=89425,25;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:1102,0,1102:0,0,15,10 +chrX 3364716 . C T, 1092.04 . AS_QUALapprox=|1102|0;AS_VarDP=0|25|0;DP=25;QUALapprox=1102;RAW_GT_COUNT=0,0,1;RAW_MQandDP=89425,25;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:1102,0,1102:0,0,15,10 +chrX 3364717 . G . . END=3365117 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,744 +chrX 3365118 . A T, 1265.04 . AS_QUALapprox=|1275|0;AS_VarDP=0|40|0;DP=40;QUALapprox=1275;RAW_GT_COUNT=0,0,1;RAW_MQandDP=144000,40;VarDP=40 GT:AD:DP:GQ:PL:SB 1:0,40,0:40:99:1275,0,1275:0,0,18,22 +chrX 3365119 . G . . END=3365165 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,993 +chrX 3365166 . A G, 912.04 . AS_QUALapprox=|922|0;AS_VarDP=0|30|0;DP=32;QUALapprox=922;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:922,0,922:0,0,15,15 +chrX 3365167 . A . . END=3368938 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,560 +chrX 3368939 . T TA, 636.01 . AS_QUALapprox=|646|0;AS_VarDP=0|23|0;DP=28;QUALapprox=646;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100225,28;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:646,0,646:0,0,11,12 +chrX 3368940 . A . . END=3371722 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,567 +chrX 3371723 . C T, 1012.04 . AS_QUALapprox=|1022|0;AS_VarDP=0|32|0;DP=32;QUALapprox=1022;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1022,0,1022:0,0,17,15 +chrX 3371724 . A . . END=3372599 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,626 +chrX 3372600 . T A, 641.04 . AS_QUALapprox=|651|0;AS_VarDP=0|19|0;DP=20;QUALapprox=651;RAW_GT_COUNT=0,0,1;RAW_MQandDP=72000,20;VarDP=19 GT:AD:DP:GQ:PL:SB 1:0,19,0:19:99:651,0,651:0,0,8,11 +chrX 3372601 . T . . END=3373550 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,575 +chrX 3373551 . C T, 819.04 . AS_QUALapprox=|829|0;AS_VarDP=0|25|0;DP=25;QUALapprox=829;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:829,0,829:0,0,9,16 +chrX 3373552 . G . . END=3375708 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,570 +chrX 3375709 . A G, 651.04 . AS_QUALapprox=|661|0;AS_VarDP=0|19|0;DP=20;QUALapprox=661;RAW_GT_COUNT=0,0,1;RAW_MQandDP=72000,20;VarDP=19 GT:AD:DP:GQ:PL:SB 1:0,19,0:19:99:661,0,661:0,0,8,11 +chrX 3375710 . A . . END=3376245 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,340 +chrX 3376246 . T C, 352.04 . AS_QUALapprox=|362|0;AS_VarDP=0|11|0;DP=11;QUALapprox=362;RAW_GT_COUNT=0,0,1;RAW_MQandDP=39600,11;VarDP=11 GT:AD:DP:GQ:PL:SB 1:0,11,0:11:99:362,0,362:0,0,6,5 +chrX 3376247 . G . . END=3376963 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,273 +chrX 3376964 . C T, 1062.04 . AS_QUALapprox=|1072|0;AS_VarDP=0|32|0;DP=34;QUALapprox=1072;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1072,0,1072:0,0,18,14 +chrX 3376965 . C . . END=3376975 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,1028 +chrX 3376976 . G A, 1132.04 . AS_QUALapprox=|1142|0;AS_VarDP=0|34|0;DP=34;QUALapprox=1142;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1142,0,1142:0,0,21,13 +chrX 3376977 . A . . END=3377025 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,823 +chrX 3377026 . C T, 854.04 . AS_QUALapprox=|864|0;AS_VarDP=0|26|0;DP=27;QUALapprox=864;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:864,0,864:0,0,13,13 +chrX 3377027 . T . . END=3377153 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,715 +chrX 3377154 . G C, 824.04 . AS_QUALapprox=|834|0;AS_VarDP=0|26|0;DP=27;QUALapprox=834;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:834,0,834:0,0,8,18 +chrX 3377155 . C . . END=3377489 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,656 +chrX 3377490 . CA C, 490.01 . AS_QUALapprox=|500|0;AS_VarDP=0|19|0;DP=28;QUALapprox=500;RAW_GT_COUNT=0,0,1;RAW_MQandDP=98800,28;VarDP=19 GT:AD:DP:GQ:PL:SB 1:0,19,0:19:99:500,0,500:0,0,10,9 +chrX 3377492 . A . . END=3377714 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,615 +chrX 3377715 . ATG A, 1149.01 . AS_QUALapprox=|1159|0;AS_VarDP=0|26|0;DP=29;QUALapprox=1159;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:1159,0,1159:0,0,14,12 +chrX 3377718 . T . . END=3377734 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,729 +chrX 3377735 . GTGTGTA G, 1188.01 . AS_QUALapprox=|1198|0;AS_VarDP=0|27|0;DP=28;QUALapprox=1198;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:1198,0,1198:0,0,15,12 +chrX 3377742 . T . . END=3377927 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,713 +chrX 3377928 . CGT C, 931.01 . AS_QUALapprox=|941|0;AS_VarDP=0|25|0;DP=29;QUALapprox=941;RAW_GT_COUNT=0,0,1;RAW_MQandDP=103825,29;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:941,0,941:0,0,9,16 +chrX 3377931 . G . . END=3377989 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,729 +chrX 3377990 . T C, 1039.04 . AS_QUALapprox=|1049|0;AS_VarDP=0|32|0;DP=33;QUALapprox=1049;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1049,0,1049:0,0,17,15 +chrX 3377991 . T . . END=3378028 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,918 +chrX 3378029 . C T, 931.04 . AS_QUALapprox=|941|0;AS_VarDP=0|28|0;DP=30;QUALapprox=941;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:941,0,941:0,0,16,12 +chrX 3378030 . T . . END=3378681 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,596 +chrX 3378682 . A G, 757.04 . AS_QUALapprox=|767|0;AS_VarDP=0|24|0;DP=24;QUALapprox=767;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:767,0,767:0,0,11,13 +chrX 3378683 . G . . END=3378815 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,596 +chrX 3378816 . G C, 655.04 . AS_QUALapprox=|665|0;AS_VarDP=0|20|0;DP=21;QUALapprox=665;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75600,21;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:665,0,665:0,0,16,4 +chrX 3378817 . A . . END=3379462 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,670 +chrX 3379463 . A G, 669.04 . AS_QUALapprox=|679|0;AS_VarDP=0|22|0;DP=23;QUALapprox=679;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:679,0,679:0,0,12,10 +chrX 3379464 . T . . END=3379659 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,654 +chrX 3379660 . G A, 834.04 . AS_QUALapprox=|844|0;AS_VarDP=1|27|0;BaseQRankSum=1.660;DP=30;MQRankSum=0.000;QUALapprox=844;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;ReadPosRankSum=0.124;VarDP=28 GT:AD:DP:GQ:PL:SB 1:1,27,0:28:99:844,0,868:1,0,14,13 +chrX 3379661 . T . . END=3380179 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,768 +chrX 3380180 . T C, 1087.04 . AS_QUALapprox=|1097|0;AS_VarDP=0|34|0;DP=35;QUALapprox=1097;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1097,0,1097:0,0,18,16 +chrX 3380181 . C . . END=3380778 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,864 +chrX 3380779 . A G, 1082.04 . AS_QUALapprox=|1092|0;AS_VarDP=0|34|0;DP=34;QUALapprox=1092;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1092,0,1092:0,0,12,22 +chrX 3380780 . T . . END=3380855 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,864 +chrX 3380856 . T C, 1254.04 . AS_QUALapprox=|1264|0;AS_VarDP=0|29|0;DP=29;QUALapprox=1264;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:1264,0,1264:0,0,14,15 +chrX 3380857 . G . . END=3380869 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,813 +chrX 3380870 . C T, 1205.04 . AS_QUALapprox=|1215|0;AS_VarDP=0|27|0;DP=27;QUALapprox=1215;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:1215,0,1215:0,0,14,13 +chrX 3380871 . G . . END=3380892 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,670 +chrX 3380893 . A G, 1005.04 . AS_QUALapprox=|1015|0;AS_VarDP=0|23|0;DP=25;QUALapprox=1015;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:1015,0,1015:0,0,14,9 +chrX 3380894 . T . . END=3381684 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,565 +chrX 3381685 . A G, 749.04 . AS_QUALapprox=|759|0;AS_VarDP=0|23|0;DP=24;QUALapprox=759;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:759,0,759:0,0,11,12 +chrX 3381686 . G . . END=3381946 GT:DP:GQ:MIN_DP:PL 0:25:41:25:0,41 +chrX 3381947 . C CAAA, 520.01 . AS_QUALapprox=|530|0;AS_VarDP=0|15|0;DP=22;QUALapprox=530;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75200,22;VarDP=15 GT:AD:DP:GQ:PL:SB 1:0,15,0:15:99:530,0,530:0,0,7,8 +chrX 3381948 . A . . END=3382253 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,561 +chrX 3382254 . G A, 972.04 . AS_QUALapprox=|982|0;AS_VarDP=0|31|0;DP=32;QUALapprox=982;RAW_GT_COUNT=0,0,1;RAW_MQandDP=113044,32;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:982,0,982:0,0,14,17 +chrX 3382255 . G . . END=3382291 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,948 +chrX 3382292 . AAAG A, 1430.01 . AS_QUALapprox=|1440|0;AS_VarDP=0|32|0;DP=33;QUALapprox=1440;RAW_GT_COUNT=0,0,1;RAW_MQandDP=116644,33;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1440,0,1440:0,0,16,16 +chrX 3382296 . T TC, 1430.01 . AS_QUALapprox=|1440|0;AS_VarDP=0|32|0;DP=34;QUALapprox=1440;RAW_GT_COUNT=0,0,1;RAW_MQandDP=120244,34;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1440,0,1440:0,0,16,16 +chrX 3382297 . T . . END=3382435 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,923 +chrX 3382436 . C A, 1107.04 . AS_QUALapprox=|1117|0;AS_VarDP=0|33|0;DP=35;QUALapprox=1117;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1117,0,1117:0,0,16,17 +chrX 3382437 . C . . END=3382566 GT:DP:GQ:MIN_DP:PL 0:40:99:40:0,1147 +chrX 3382567 . G A, 1234.04 . AS_QUALapprox=|1244|0;AS_VarDP=0|40|0;DP=40;QUALapprox=1244;RAW_GT_COUNT=0,0,1;RAW_MQandDP=144000,40;VarDP=40 GT:AD:DP:GQ:PL:SB 1:0,40,0:40:99:1244,0,1244:0,0,20,20 +chrX 3382568 . T . . END=3382917 GT:DP:GQ:MIN_DP:PL 0:39:99:39:0,952 +chrX 3382918 . A G, 913.04 . AS_QUALapprox=|923|0;AS_VarDP=0|28|0;DP=30;QUALapprox=923;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:923,0,923:0,0,15,13 +chrX 3382919 . T . . END=3385095 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,529 +chrX 3385096 . T C, 724.04 . AS_QUALapprox=|734|0;AS_VarDP=0|23|0;DP=23;QUALapprox=734;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:734,0,734:0,0,14,9 +chrX 3385097 . G . . END=3385370 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,784 +chrX 3385371 . G A, 854.04 . AS_QUALapprox=|864|0;AS_VarDP=0|26|0;DP=27;QUALapprox=864;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:864,0,864:0,0,14,12 +chrX 3385372 . T . . END=3385505 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,655 +chrX 3385506 . T A, 732.04 . AS_QUALapprox=|742|0;AS_VarDP=1|23|0;BaseQRankSum=-0.151;DP=25;MQRankSum=0.000;QUALapprox=742;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;ReadPosRankSum=-0.290;VarDP=24 GT:AD:DP:GQ:PL:SB 1:1,23,0:24:99:742,0,776:1,0,15,8 +chrX 3385507 . A . . END=3385677 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,621 +chrX 3385678 . T TGATA, 1159.01 . AS_QUALapprox=|1169|0;AS_VarDP=0|27|0;DP=31;QUALapprox=1169;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:1169,0,1170:0,0,13,14 +chrX 3385679 . G . . END=3386721 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,655 +chrX 3386722 . C T, 1396.04 . AS_QUALapprox=|1406|0;AS_VarDP=0|42|0;DP=44;QUALapprox=1406;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158400,44;VarDP=42 GT:AD:DP:GQ:PL:SB 1:0,42,0:42:99:1406,0,1406:0,0,19,23 +chrX 3386723 . T . . END=3386941 GT:DP:GQ:MIN_DP:PL 0:38:99:38:0,1047 +chrX 3386942 . C T, 1121.04 . AS_QUALapprox=|1131|0;AS_VarDP=0|35|0;DP=35;QUALapprox=1131;RAW_GT_COUNT=0,0,1;RAW_MQandDP=125425,35;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,35,0:35:99:1131,0,1131:0,0,19,16 +chrX 3386943 . G . . END=3387413 GT:DP:GQ:MIN_DP:PL 0:40:99:40:0,1057 +chrX 3387414 . A ATG, 1327.01 . AS_QUALapprox=|1337|0;AS_VarDP=0|35|0;DP=36;QUALapprox=1337;RAW_GT_COUNT=0,0,1;RAW_MQandDP=127764,36;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,35,0:35:99:1337,0,1337:0,0,11,24 +chrX 3387415 . T . . END=3387542 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,753 +chrX 3387543 . GTA G, 765.01 . AS_QUALapprox=|775|0;AS_VarDP=0|18|0;DP=22;QUALapprox=775;RAW_GT_COUNT=0,0,1;RAW_MQandDP=77626,22;VarDP=18 GT:AD:DP:GQ:PL:SB 1:0,18,0:18:99:775,0,775:0,0,7,11 +chrX 3387546 . T . . END=3387565 GT:DP:GQ:MIN_DP:PL 0:19:99:19:0,591 +chrX 3387566 . T C, 813.04 . AS_QUALapprox=|823|0;AS_VarDP=1|20|0;BaseQRankSum=1.763;DP=22;MQRankSum=0.000;QUALapprox=823;RAW_GT_COUNT=0,0,1;RAW_MQandDP=78201,22;ReadPosRankSum=-0.744;VarDP=21 GT:AD:DP:GQ:PL:SB 1:1,20,0:21:99:823,0,858:1,0,9,11 +chrX 3387567 . G . . END=3387668 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,585 +chrX 3387669 . A ATG, 1087.01 . AS_QUALapprox=|1097|0;AS_VarDP=0|25|0;DP=25;QUALapprox=1097;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:1097,0,1097:0,0,17,8 +chrX 3387670 . T . . END=3387693 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,794 +chrX 3387694 . T C, 1262.04 . AS_QUALapprox=|1272|0;AS_VarDP=0|30|0;DP=32;QUALapprox=1272;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:1272,0,1272:0,0,23,7 +chrX 3387695 . A . . END=3387782 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,799 +chrX 3387783 . G A, 1413.04 . AS_QUALapprox=|1423|0;AS_VarDP=0|36|0;DP=38;QUALapprox=1423;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;VarDP=36 GT:AD:DP:GQ:PL:SB 1:0,36,0:36:99:1423,0,1423:0,0,17,19 +chrX 3387784 . T . . END=3387800 GT:DP:GQ:MIN_DP:PL 0:37:99:37:0,990 +chrX 3387801 . ATG A, 1609.01 . AS_QUALapprox=|1619|0;AS_VarDP=0|39|0;DP=39;QUALapprox=1619;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140400,39;VarDP=39 GT:AD:DP:GQ:PL:SB 1:0,39,0:39:99:1619,0,1619:0,0,19,20 +chrX 3387804 . T . . END=3387820 GT:DP:GQ:MIN_DP:PL 0:38:99:38:0,901 +chrX 3387821 . T G, 1614.04 . AS_QUALapprox=|1624|0;AS_VarDP=0|38|0;DP=38;QUALapprox=1624;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;VarDP=38 GT:AD:DP:GQ:PL:SB 1:0,38,0:38:99:1624,0,1624:0,0,16,22 +chrX 3387822 . T . . END=3388066 GT:DP:GQ:MIN_DP:PL 0:37:99:37:0,852 +chrX 3388067 . T C, 791.04 . AS_QUALapprox=|801|0;AS_VarDP=0|26|0;DP=28;QUALapprox=801;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:801,0,801:0,0,17,9 +chrX 3388068 . C . . END=3389323 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,616 +chrX 3389324 . C T, 1002.04 . AS_QUALapprox=|1012|0;AS_VarDP=0|31|0;DP=31;QUALapprox=1012;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1012,0,1012:0,0,19,12 +chrX 3389325 . T . . END=3389753 GT:DP:GQ:MIN_DP:PL 0:40:99:40:0,1003 +chrX 3389754 . A G, 1146.04 . AS_QUALapprox=|1156|0;AS_VarDP=1|36|0;BaseQRankSum=-0.367;DP=38;MQRankSum=0.000;QUALapprox=1156;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;ReadPosRankSum=1.640;VarDP=37 GT:AD:DP:GQ:PL:SB 1:1,36,0:37:99:1156,0,1191:1,0,19,17 +chrX 3389755 . T . . END=3390045 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,899 +chrX 3390046 . T C, 863.04 . AS_QUALapprox=|873|0;AS_VarDP=1|28|0;BaseQRankSum=-0.364;DP=30;MQRankSum=0.000;QUALapprox=873;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;ReadPosRankSum=1.375;VarDP=29 GT:AD:DP:GQ:PL:SB 1:1,28,0:29:99:873,0,908:0,1,13,15 +chrX 3390047 . A . . END=3390172 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,675 +chrX 3390173 . A G, 981.04 . AS_QUALapprox=|991|0;AS_VarDP=0|30|0;DP=33;QUALapprox=991;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:991,0,991:0,0,17,13 +chrX 3390174 . C . . END=3390717 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,735 +chrX 3390718 . T A, 790.04 . AS_QUALapprox=|800|0;AS_VarDP=0|23|0;DP=24;QUALapprox=800;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:800,0,800:0,0,10,13 +chrX 3390719 . G . . END=3390830 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,798 +chrX 3390831 . G A, 1017.04 . AS_QUALapprox=|1027|0;AS_VarDP=0|31|0;DP=31;QUALapprox=1027;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1027,0,1027:0,0,12,19 +chrX 3390832 . T . . END=3391176 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,705 +chrX 3391177 . G C, 827.04 . AS_QUALapprox=|837|0;AS_VarDP=0|28|0;DP=30;QUALapprox=837;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:837,0,837:0,0,17,11 +chrX 3391178 . T . . END=3391722 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,749 +chrX 3391723 . A G, 862.04 . AS_QUALapprox=|872|0;AS_VarDP=0|27|0;DP=29;QUALapprox=872;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:872,0,872:0,0,13,14 +chrX 3391724 . A . . END=3391900 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,547 +chrX 3391901 . T G, 630.04 . AS_QUALapprox=|640|0;AS_VarDP=0|19|0;DP=20;QUALapprox=640;RAW_GT_COUNT=0,0,1;RAW_MQandDP=71425,20;VarDP=19 GT:AD:DP:GQ:PL:SB 1:0,19,0:19:99:640,0,640:0,0,12,7 +chrX 3391902 . C . . END=3392002 GT:DP:GQ:MIN_DP:PL 0:17:99:17:0,457 +chrX 3392003 . CAAAA C, 359.01 . AS_QUALapprox=|369|0;AS_VarDP=4|10|0;BaseQRankSum=0.000;DP=27;MQRankSum=0.000;QUALapprox=369;RAW_GT_COUNT=0,0,1;RAW_MQandDP=92964,27;ReadPosRankSum=0.316;VarDP=14 GT:AD:DP:GQ:PL:SB 1:4,10,0:14:99:369,0,443:1,3,8,2 +chrX 3392008 . A . . END=3392296 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,759 +chrX 3392297 . C T, 1037.04 . AS_QUALapprox=|1047|0;AS_VarDP=0|33|0;DP=34;QUALapprox=1047;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1047,0,1047:0,0,18,15 +chrX 3392298 . A . . END=3392767 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,591 +chrX 3392768 . C G, 645.04 . AS_QUALapprox=|655|0;AS_VarDP=0|20|0;DP=20;QUALapprox=655;RAW_GT_COUNT=0,0,1;RAW_MQandDP=72000,20;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:655,0,655:0,0,8,12 +chrX 3392769 . C . . END=3392837 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,596 +chrX 3392838 . T A, 645.04 . AS_QUALapprox=|655|0;AS_VarDP=0|20|0;DP=20;QUALapprox=655;RAW_GT_COUNT=0,0,1;RAW_MQandDP=72000,20;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:655,0,655:0,0,9,11 +chrX 3392839 . T . . END=3393081 GT:DP:GQ:MIN_DP:PL 0:20:99:20:0,487 +chrX 3393082 . A C, 605.04 . AS_QUALapprox=|615|0;AS_VarDP=0|20|0;DP=20;QUALapprox=615;RAW_GT_COUNT=0,0,1;RAW_MQandDP=72000,20;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:615,0,615:0,0,12,8 +chrX 3393083 . A . . END=3393437 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,516 +chrX 3393438 . G A, 1013.04 . AS_QUALapprox=|1023|0;AS_VarDP=0|30|0;DP=30;QUALapprox=1023;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:1023,0,1023:0,0,14,16 +chrX 3393439 . C . . END=3393679 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,863 +chrX 3393680 . A G, 943.04 . AS_QUALapprox=|953|0;AS_VarDP=0|29|0;DP=29;QUALapprox=953;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:953,0,953:0,0,10,19 +chrX 3393681 . G . . END=3394370 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,793 +chrX 3394371 . C T, 829.04 . AS_QUALapprox=|839|0;AS_VarDP=0|25|0;DP=25;QUALapprox=839;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:839,0,839:0,0,12,13 +chrX 3394372 . C . . END=3394892 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,580 +chrX 3394893 . G T, 908.04 . AS_QUALapprox=|918|0;AS_VarDP=0|28|0;DP=29;QUALapprox=918;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:918,0,918:0,0,15,13 +chrX 3394894 . C . . END=3395822 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,571 +chrX 3395823 . T C, 558.04 . AS_QUALapprox=|568|0;AS_VarDP=0|18|0;DP=18;QUALapprox=568;RAW_GT_COUNT=0,0,1;RAW_MQandDP=64800,18;VarDP=18 GT:AD:DP:GQ:PL:SB 1:0,18,0:18:99:568,0,568:0,0,8,10 +chrX 3395824 . T . . END=3396303 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,536 +chrX 3396304 . G A, 779.04 . AS_QUALapprox=|789|0;AS_VarDP=0|25|0;DP=25;QUALapprox=789;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:789,0,789:0,0,15,10 +chrX 3396305 . G . . END=3396422 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,780 +chrX 3396423 . C T, 982.04 . AS_QUALapprox=|992|0;AS_VarDP=0|31|0;DP=31;QUALapprox=992;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:992,0,992:0,0,14,17 +chrX 3396424 . T . . END=3396444 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,948 +chrX 3396445 . C T, 957.04 . AS_QUALapprox=|967|0;AS_VarDP=0|31|0;DP=33;QUALapprox=967;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:967,0,967:0,0,13,18 +chrX 3396446 . G . . END=3396461 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,1003 +chrX 3396462 . T TG, 1052.01 . AS_QUALapprox=|1062|0;AS_VarDP=0|33|0;DP=35;QUALapprox=1062;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1062,0,1062:0,0,16,17 +chrX 3396463 . G . . END=3397323 GT:DP:GQ:MIN_DP:PL 0:40:99:40:0,640 +chrX 3397324 . C A, 1281.04 . AS_QUALapprox=|1291|0;AS_VarDP=0|38|0;DP=39;QUALapprox=1291;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140400,39;VarDP=38 GT:AD:DP:GQ:PL:SB 1:0,38,0:38:99:1291,0,1291:0,0,17,21 +chrX 3397325 . T . . END=3397881 GT:DP:GQ:MIN_DP:PL 0:37:99:37:0,819 +chrX 3397882 . G A, 937.04 . AS_QUALapprox=|947|0;AS_VarDP=0|28|0;DP=28;QUALapprox=947;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:947,0,947:0,0,15,13 +chrX 3397883 . T . . END=3397985 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,908 +chrX 3397986 . G A, 1122.04 . AS_QUALapprox=|1132|0;AS_VarDP=0|34|0;DP=35;QUALapprox=1132;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1132,0,1132:0,0,20,14 +chrX 3397987 . G . . END=3398448 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,580 +chrX 3398449 . A G, 942.04 . AS_QUALapprox=|952|0;AS_VarDP=0|31|0;DP=32;QUALapprox=952;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:952,0,952:0,0,16,15 +chrX 3398450 . G . . END=3398809 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,637 +chrX 3398810 . A G, 734.04 . AS_QUALapprox=|744|0;AS_VarDP=0|23|0;DP=23;QUALapprox=744;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:744,0,744:0,0,12,11 +chrX 3398811 . G . . END=3398979 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,580 +chrX 3398980 . G GTT, 1295.01 . AS_QUALapprox=|1305|0;AS_VarDP=0|29|0;DP=30;QUALapprox=1305;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:1305,0,1305:0,0,19,10 +chrX 3398981 . A . . END=3401405 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,530 +chrX 3401406 . T C, 1104.04 . AS_QUALapprox=|1114|0;AS_VarDP=0|27|0;DP=28;QUALapprox=1114;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:1114,0,1114:0,0,12,15 +chrX 3401407 . T . . END=3401411 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,745 +chrX 3401412 . CT C, 1028.01 . AS_QUALapprox=|1038|0;AS_VarDP=0|25|0;DP=25;QUALapprox=1038;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:1038,0,1038:0,0,12,13 +chrX 3401414 . T . . END=3406979 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,491 +chrX 3406980 . C T, 1121.04 . AS_QUALapprox=|1131|0;AS_VarDP=0|36|0;DP=38;QUALapprox=1131;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;VarDP=36 GT:AD:DP:GQ:PL:SB 1:0,36,0:36:99:1131,0,1131:0,0,22,14 +chrX 3406981 . T . . END=3408900 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,655 +chrX 3408901 . TACAC T, 452.01 . AS_QUALapprox=|462|0;AS_VarDP=1|11|0;BaseQRankSum=-0.380;DP=21;MQRankSum=0.000;QUALapprox=462;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75600,21;ReadPosRankSum=0.435;VarDP=12 GT:AD:DP:GQ:PL:SB 1:1,11,0:12:99:462,0,485:1,0,6,5 +chrX 3408906 . A . . END=3411551 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,447 +chrX 3411552 . C T, 382.04 . AS_QUALapprox=|392|0;AS_VarDP=1|13|0;BaseQRankSum=0.000;DP=16;MQRankSum=0.000;QUALapprox=392;RAW_GT_COUNT=0,0,1;RAW_MQandDP=57136,16;ReadPosRankSum=-0.622;VarDP=14 GT:AD:DP:GQ:PL:SB 1:1,13,0:14:99:392,0,427:1,0,9,4 +chrX 3411553 . G . . END=3413803 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,442 +chrX 3413804 . G A, 834.04 . AS_QUALapprox=|844|0;AS_VarDP=1|27|0;BaseQRankSum=-0.435;DP=28;MQRankSum=1.878;QUALapprox=844;RAW_GT_COUNT=0,0,1;RAW_MQandDP=78700,28;ReadPosRankSum=-0.558;VarDP=28 GT:AD:DP:GQ:PL:SB 1:1,27,0:28:99:844,0,878:0,1,15,12 +chrX 3413805 . C . . END=3414746 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,675 +chrX 3414747 . G A, 922.04 . AS_QUALapprox=|932|0;AS_VarDP=0|28|0;DP=30;QUALapprox=932;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:932,0,932:0,0,16,12 +chrX 3414748 . G . . END=3414918 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,651 +chrX 3414919 . A T, 709.04 . AS_QUALapprox=|719|0;AS_VarDP=0|22|0;DP=22;QUALapprox=719;RAW_GT_COUNT=0,0,1;RAW_MQandDP=79200,22;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:719,0,719:0,0,10,12 +chrX 3414920 . G . . END=3415013 GT:DP:GQ:MIN_DP:PL 0:19:99:19:0,447 +chrX 3415014 . A G, 536.04 . AS_QUALapprox=|546|0;AS_VarDP=0|17|0;DP=21;QUALapprox=546;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75600,21;VarDP=17 GT:AD:DP:GQ:PL:SB 1:0,17,0:17:99:546,0,546:0,0,7,10 +chrX 3415015 . G . . END=3415780 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,467 +chrX 3415781 . C G, 978.04 . AS_QUALapprox=|988|0;AS_VarDP=0|29|0;DP=29;QUALapprox=988;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:988,0,988:0,0,15,14 +chrX 3415782 . A . . END=3415973 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,913 +chrX 3415974 . T C, 812.04 . AS_QUALapprox=|822|0;AS_VarDP=0|25|0;DP=28;QUALapprox=822;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:822,0,822:0,0,12,13 +chrX 3415975 . C . . END=3416522 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,794 +chrX 3416523 . G A, 966.04 . AS_QUALapprox=|976|0;AS_VarDP=0|29|0;DP=30;QUALapprox=976;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:976,0,976:0,0,11,18 +chrX 3416524 . G . . END=3417212 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,357 +chrX 3417213 . TCTTCCTTC T, 469.01 . AS_QUALapprox=|479|0;AS_VarDP=0|12|0;DP=18;QUALapprox=479;RAW_GT_COUNT=0,0,1;RAW_MQandDP=64800,18;VarDP=12 GT:AD:DP:GQ:PL:SB 1:0,12,0:12:99:479,0,479:0,0,9,3 +chrX 3417222 . C . . END=3418817 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,444 +chrX 3418818 . G A, 843.04 . AS_QUALapprox=|853|0;AS_VarDP=0|26|0;DP=27;QUALapprox=853;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:853,0,853:0,0,11,15 +chrX 3418819 . C . . END=3418851 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,684 +chrX 3418852 . C T, 823.04 . AS_QUALapprox=|833|0;AS_VarDP=0|26|0;DP=26;QUALapprox=833;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:833,0,833:0,0,12,14 +chrX 3418853 . A . . END=3418954 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,695 +chrX 3418955 . A C, 650.04 . AS_QUALapprox=|660|0;AS_VarDP=0|20|0;DP=22;QUALapprox=660;RAW_GT_COUNT=0,0,1;RAW_MQandDP=79200,22;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:660,0,660:0,0,11,9 +chrX 3418956 . C . . END=3419369 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,645 +chrX 3419370 . C CAAAAAA, 1091.01 . AS_QUALapprox=|1101|0;AS_VarDP=0|26|0;DP=28;QUALapprox=1101;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:1101,0,1102:0,0,16,10 +chrX 3419371 . A . . END=3419628 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,661 +chrX 3419629 . G A, 843.04 . AS_QUALapprox=|853|0;AS_VarDP=0|26|0;DP=27;QUALapprox=853;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:853,0,853:0,0,9,17 +chrX 3419630 . C . . END=3419985 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,655 +chrX 3419986 . G T, 794.04 . AS_QUALapprox=|804|0;AS_VarDP=0|24|0;DP=26;QUALapprox=804;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:804,0,804:0,0,15,9 +chrX 3419987 . A . . END=3421029 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,587 +chrX 3421030 . C CA, 537.01 . AS_QUALapprox=|547|0;AS_VarDP=0|23|0;DP=27;QUALapprox=547;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:547,0,547:0,0,14,9 +chrX 3421031 . A . . END=3422692 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,213 +chrX 3422693 . C T, 465.04 . AS_QUALapprox=|475|0;AS_VarDP=0|16|0;DP=17;QUALapprox=475;RAW_GT_COUNT=0,0,1;RAW_MQandDP=60625,17;VarDP=16 GT:AD:DP:GQ:PL:SB 1:0,16,0:16:99:475,0,475:0,0,12,4 +chrX 3422694 . G . . END=3422719 GT:DP:GQ:MIN_DP:PL 0:15:99:15:0,360 +chrX 3422720 . C CA, 313.01 . AS_QUALapprox=|323|0;AS_VarDP=0|17|0;DP=25;QUALapprox=323;RAW_GT_COUNT=0,0,1;RAW_MQandDP=83121,25;VarDP=17 GT:AD:DP:GQ:PL:SB 1:0,17,0:17:99:323,0,323:0,0,10,7 +chrX 3422721 . A . . END=3426244 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,452 +chrX 3426245 . A G, 889.04 . AS_QUALapprox=|899|0;AS_VarDP=0|27|0;DP=30;QUALapprox=899;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:899,0,899:0,0,11,16 +chrX 3426246 . T . . END=3434786 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,416 +chrX 3434787 . A G, 1220.04 . AS_QUALapprox=|1230|0;AS_VarDP=0|37|0;DP=37;QUALapprox=1230;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133200,37;VarDP=37 GT:AD:DP:GQ:PL:SB 1:0,37,0:37:99:1230,0,1230:0,0,17,20 +chrX 3434788 . T . . END=3436262 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,456 +chrX 3436263 . T G, 633.04 . AS_QUALapprox=|643|0;AS_VarDP=0|20|0;DP=20;QUALapprox=643;RAW_GT_COUNT=0,0,1;RAW_MQandDP=43357,20;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:643,0,643:0,0,11,9 +chrX 3436264 . G . . END=3436278 GT:DP:GQ:MIN_DP:PL 0:17:99:17:0,446 +chrX 3436279 . C G, 793.04 . AS_QUALapprox=|803|0;AS_VarDP=0|19|0;DP=19;QUALapprox=803;RAW_GT_COUNT=0,0,1;RAW_MQandDP=33757,19;VarDP=19 GT:AD:DP:GQ:PL:SB 1:0,19,0:19:99:803,0,803:0,0,9,10 +chrX 3436280 . G . . END=3436281 GT:DP:GQ:MIN_DP:PL 0:17:99:17:0,581 +chrX 3436282 . T C, 827.04 . AS_QUALapprox=|837|0;AS_VarDP=0|20|0;DP=20;QUALapprox=837;RAW_GT_COUNT=0,0,1;RAW_MQandDP=35357,20;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:837,0,837:0,0,9,11 +chrX 3436283 . C . . END=3436447 GT:DP:GQ:MIN_DP:PL 0:20:99:20:0,466 +chrX 3436448 . C T, 495.04 . AS_QUALapprox=|505|0;AS_VarDP=0|15|0;DP=16;QUALapprox=505;RAW_GT_COUNT=0,0,1;RAW_MQandDP=27347,16;VarDP=15 GT:AD:DP:GQ:PL:SB 1:0,15,0:15:99:505,0,505:0,0,8,7 +chrX 3436449 . C . . END=3436852 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,452 +chrX 3436853 . GTA G, 1072.01 . AS_QUALapprox=|1082|0;AS_VarDP=0|29|0;DP=29;QUALapprox=1082;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:1082,0,1082:0,0,18,11 +chrX 3436856 . T . . END=3437396 GT:DP:GQ:MIN_DP:PL 0:37:99:37:0,747 +chrX 3437397 . CTG C, 1141.01 . AS_QUALapprox=|1151|0;AS_VarDP=0|31|0;DP=38;QUALapprox=1151;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1151,0,1151:0,0,16,15 +chrX 3437400 . T . . END=3437590 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,461 +chrX 3437591 . T C, 594.04 . AS_QUALapprox=|604|0;AS_VarDP=1|22|0;BaseQRankSum=1.161;DP=23;MQRankSum=0.000;QUALapprox=604;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;ReadPosRankSum=-0.075;VarDP=23 GT:AD:DP:GQ:PL:SB 1:1,22,0:23:99:604,0,649:0,1,10,12 +chrX 3437592 . C . . END=3437714 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,639 +chrX 3437715 . AGTGT A, 943.01 . AS_QUALapprox=|953|0;AS_VarDP=0|22|0;DP=24;QUALapprox=953;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:953,0,953:0,0,9,13 +chrX 3437720 . G . . END=3438606 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,576 +chrX 3438607 . G A, 758.04 . AS_QUALapprox=|768|0;AS_VarDP=2|25|0;BaseQRankSum=2.499;DP=28;MQRankSum=0.000;QUALapprox=768;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;ReadPosRankSum=-0.093;VarDP=27 GT:AD:DP:GQ:PL:SB 1:2,25,0:27:99:768,0,818:1,1,10,15 +chrX 3438608 . G . . END=3438864 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,819 +chrX 3438865 . A AT, 774.01 . AS_QUALapprox=|784|0;AS_VarDP=0|27|0;DP=29;QUALapprox=784;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:784,0,785:0,0,15,12 +chrX 3438866 . T . . END=3439562 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,387 +chrX 3439563 . C T, 1008.04 . AS_QUALapprox=|1018|0;AS_VarDP=0|31|0;DP=31;QUALapprox=1018;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111025,31;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1018,0,1018:0,0,16,15 +chrX 3439564 . G . . END=3441676 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,471 +chrX 3441677 . G A, 1013.04 . AS_QUALapprox=|1023|0;AS_VarDP=0|30|0;DP=31;QUALapprox=1023;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:1023,0,1023:0,0,23,7 +chrX 3441678 . T . . END=3441812 GT:DP:GQ:MIN_DP:PL 0:41:99:41:0,948 +chrX 3441813 . G A, 1489.04 . AS_QUALapprox=|1499|0;AS_VarDP=0|47|0;DP=48;QUALapprox=1499;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=47 GT:AD:DP:GQ:PL:SB 1:0,47,0:47:99:1499,0,1499:0,0,26,21 +chrX 3441814 . G . . END=3442363 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,601 +chrX 3442364 . A G, 769.04 . AS_QUALapprox=|779|0;AS_VarDP=0|23|0;DP=23;QUALapprox=779;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:779,0,779:0,0,14,9 +chrX 3442365 . T . . END=3442582 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,651 +chrX 3442583 . GT G, 635.01 . AS_QUALapprox=|645|0;AS_VarDP=1|24|0;BaseQRankSum=-0.398;DP=28;MQRankSum=0.000;QUALapprox=645;RAW_GT_COUNT=0,0,1;RAW_MQandDP=98800,28;ReadPosRankSum=0.624;VarDP=25 GT:AD:DP:GQ:PL:SB 1:1,24,0:25:99:645,0,672:0,1,15,9 +chrX 3442585 . T . . END=3445592 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,705 +chrX 3445593 . C T, 957.04 . AS_QUALapprox=|967|0;AS_VarDP=0|30|0;DP=31;QUALapprox=967;RAW_GT_COUNT=0,0,1;RAW_MQandDP=110149,31;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:967,0,967:0,0,15,15 +chrX 3445594 . A . . END=3446098 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,502 +chrX 3446099 . CA C, 144.01 . AS_QUALapprox=|154|0;AS_VarDP=3|11|0;BaseQRankSum=2.460;DP=32;MQRankSum=0.000;QUALapprox=154;RAW_GT_COUNT=0,0,1;RAW_MQandDP=113200,32;ReadPosRankSum=1.750;VarDP=14 GT:AD:DP:GQ:PL:SB 1:3,11,0:14:99:154,0,210:0,3,7,4 +chrX 3446101 . A . . END=3447666 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,744 +chrX 3447667 . A C, 1185.04 . AS_QUALapprox=|1195|0;AS_VarDP=0|37|0;DP=37;QUALapprox=1195;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133200,37;VarDP=37 GT:AD:DP:GQ:PL:SB 1:0,37,0:37:99:1195,0,1195:0,0,14,23 +chrX 3447668 . C . . END=3448057 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,270 +chrX 3448058 . T . . END=3448061 GT:DP:GQ:MIN_DP:PL 0:28:0:28:0,0 +chrX 3448062 . T . . END=3448082 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,764 +chrX 3448083 . ATC A, 994.01 . AS_QUALapprox=|1004|0;AS_VarDP=2|25|0;BaseQRankSum=2.396;DP=27;MQRankSum=0.000;QUALapprox=1004;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;ReadPosRankSum=0.722;VarDP=27 GT:AD:DP:GQ:PL:SB 1:2,25,0:27:99:1004,0,1074:1,1,11,14 +chrX 3448086 . T . . END=3448086 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,804 +chrX 3448087 . ATC A, 994.01 . AS_QUALapprox=|1004|0;AS_VarDP=2|25|0;BaseQRankSum=1.825;DP=27;MQRankSum=0.000;QUALapprox=1004;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;ReadPosRankSum=0.695;VarDP=27 GT:AD:DP:GQ:PL:SB 1:2,25,0:27:99:1004,0,1074:1,1,11,14 +chrX 3448090 . T . . END=3448219 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,739 +chrX 3448220 . C T, 789.04 . AS_QUALapprox=|799|0;AS_VarDP=0|23|0;DP=24;QUALapprox=799;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:799,0,799:0,0,10,13 +chrX 3448221 . G . . END=3448638 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,720 +chrX 3448639 . G A, 829.04 . AS_QUALapprox=|839|0;AS_VarDP=0|26|0;DP=28;QUALapprox=839;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:839,0,839:0,0,12,14 +chrX 3448640 . C . . END=3451313 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,432 +chrX 3451314 . C T, 971.04 . AS_QUALapprox=|981|0;AS_VarDP=0|29|0;DP=30;QUALapprox=981;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:981,0,981:0,0,14,15 +chrX 3451315 . T . . END=3451892 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,421 +chrX 3451893 . G GAA, 358.01 . AS_QUALapprox=|368|0;AS_VarDP=0|14|0;DP=20;QUALapprox=368;RAW_GT_COUNT=0,0,1;RAW_MQandDP=69769,20;VarDP=14 GT:AD:DP:GQ:PL:SB 1:0,14,0:14:99:368,0,368:0,0,6,8 +chrX 3451894 . A . . END=3452465 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,511 +chrX 3452466 . CATCTATCTATCTATCT C, 711.01 . AS_QUALapprox=|721|0;AS_VarDP=0|16|0;DP=22;QUALapprox=721;RAW_GT_COUNT=0,0,1;RAW_MQandDP=79200,22;VarDP=16 GT:AD:DP:GQ:PL:SB 1:0,16,0:16:99:721,0,721:0,0,5,11 +chrX 3452483 . A . . END=3453783 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,278 +chrX 3453784 . C T, 947.04 . AS_QUALapprox=|957|0;AS_VarDP=0|29|0;DP=29;QUALapprox=957;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:957,0,957:0,0,15,14 +chrX 3453785 . C . . END=3454226 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,774 +chrX 3454227 . G A, 1260.04 . AS_QUALapprox=|1270|0;AS_VarDP=0|38|0;DP=38;QUALapprox=1270;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;VarDP=38 GT:AD:DP:GQ:PL:SB 1:0,38,0:38:99:1270,0,1270:0,0,22,16 +chrX 3454228 . T . . END=3454739 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,595 +chrX 3454740 . A T, 1032.04 . AS_QUALapprox=|1042|0;AS_VarDP=0|33|0;DP=35;QUALapprox=1042;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1042,0,1042:0,0,19,14 +chrX 3454741 . T . . END=3454932 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,753 +chrX 3454933 . T G, 804.04 . AS_QUALapprox=|814|0;AS_VarDP=0|24|0;DP=24;QUALapprox=814;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:814,0,814:0,0,9,15 +chrX 3454934 . A . . END=3455087 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,780 +chrX 3455088 . T G, 909.04 . AS_QUALapprox=|919|0;AS_VarDP=0|27|0;DP=29;QUALapprox=919;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:919,0,919:0,0,16,11 +chrX 3455089 . C . . END=3455172 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,849 +chrX 3455173 . T G, 1099.04 . AS_QUALapprox=|1109|0;AS_VarDP=0|35|0;DP=37;QUALapprox=1109;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133200,37;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,35,0:35:99:1109,0,1109:0,0,24,11 +chrX 3455174 . T . . END=3455500 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,829 +chrX 3455501 . G A, 1032.04 . AS_QUALapprox=|1042|0;AS_VarDP=1|33|0;BaseQRankSum=-0.273;DP=35;MQRankSum=0.000;QUALapprox=1042;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;ReadPosRankSum=-1.530;VarDP=34 GT:AD:DP:GQ:PL:SB 1:1,33,0:34:99:1042,0,1076:1,0,17,16 +chrX 3455502 . T . . END=3455707 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,839 +chrX 3455708 . A G, 1122.04 . AS_QUALapprox=|1132|0;AS_VarDP=0|34|0;DP=35;QUALapprox=1132;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1132,0,1132:0,0,15,19 +chrX 3455709 . G . . END=3456604 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,532 +chrX 3456605 . T TTCTCTCTCTCTCTCTC, 633.01 . AS_QUALapprox=|643|0;AS_VarDP=1|16|0;BaseQRankSum=1.241;DP=27;MQRankSum=-0.599;QUALapprox=643;RAW_GT_COUNT=0,0,1;RAW_MQandDP=89398,27;ReadPosRankSum=0.514;VarDP=17 GT:AD:DP:GQ:PL:SB 1:1,16,0:17:99:643,0,670:0,1,5,11 +chrX 3456606 . T . . END=3456669 GT:DP:GQ:MIN_DP:PL 0:17:99:17:0,250 +chrX 3456670 . TCCC T, 462.01 . AS_QUALapprox=|472|0;AS_VarDP=1|11|0;BaseQRankSum=-0.381;DP=13;MQRankSum=-0.223;QUALapprox=472;RAW_GT_COUNT=0,0,1;RAW_MQandDP=43997,13;ReadPosRankSum=-0.435;VarDP=12 GT:AD:DP:GQ:PL:SB 1:1,11,0:12:99:472,0,484:1,0,1,10 +chrX 3456674 . C . . END=3458262 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,292 +chrX 3458263 . A G, 1002.04 . AS_QUALapprox=|1012|0;AS_VarDP=0|31|0;DP=34;QUALapprox=1012;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1012,0,1012:0,0,14,17 +chrX 3458264 . T . . END=3461117 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,561 +chrX 3461118 . T C, 1209.04 . AS_QUALapprox=|1219|0;AS_VarDP=0|38|0;DP=38;QUALapprox=1219;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;VarDP=38 GT:AD:DP:GQ:PL:SB 1:0,38,0:38:99:1219,0,1219:0,0,22,16 +chrX 3461119 . C . . END=3462636 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,655 +chrX 3462637 . CCACACACA C, 891.01 . AS_QUALapprox=|901|0;AS_VarDP=0|21|0;DP=24;QUALapprox=901;RAW_GT_COUNT=0,0,1;RAW_MQandDP=81857,24;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:901,0,901:0,0,15,6 +chrX 3462646 . C . . END=3463301 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,665 +chrX 3463302 . C G, 1344.04 . AS_QUALapprox=|1354|0;AS_VarDP=0|44|0;DP=45;QUALapprox=1354;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162000,45;VarDP=44 GT:AD:DP:GQ:PL:SB 1:0,44,0:44:99:1354,0,1354:0,0,18,26 +chrX 3463303 . C . . END=3463470 GT:DP:GQ:MIN_DP:PL 0:37:99:37:0,922 +chrX 3463471 . T C, 978.04 . AS_QUALapprox=|988|0;AS_VarDP=0|30|0;DP=31;QUALapprox=988;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:988,0,988:0,0,16,14 +chrX 3463472 . A . . END=3464527 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,724 +chrX 3464528 . C CT, 622.01 . AS_QUALapprox=|632|0;AS_VarDP=0|24|0;DP=26;QUALapprox=632;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:632,0,632:0,0,15,9 +chrX 3464529 . T . . END=3464611 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,724 +chrX 3464612 . T C, 878.04 . AS_QUALapprox=|888|0;AS_VarDP=0|28|0;DP=29;QUALapprox=888;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:888,0,888:0,0,13,15 +chrX 3464613 . T . . END=3465166 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,566 +chrX 3465167 . T TCCGGAAGAG, 1316.01 . AS_QUALapprox=|1326|0;AS_VarDP=3|34|0;BaseQRankSum=1.590;DP=44;MQRankSum=0.000;QUALapprox=1326;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158400,44;ReadPosRankSum=-2.645;VarDP=37 GT:AD:DP:GQ:PL:SB 1:3,34,0:37:99:1326,0,1452:2,1,19,15 +chrX 3465168 . C . . END=3465492 GT:DP:GQ:MIN_DP:PL 0:37:99:37:0,759 +chrX 3465493 . C T, 899.04 . AS_QUALapprox=|909|0;AS_VarDP=0|29|0;DP=31;QUALapprox=909;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:909,0,909:0,0,14,15 +chrX 3465494 . T . . END=3466181 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,605 +chrX 3466182 . A ATATATT, 1692.01 . AS_QUALapprox=|1702|0;AS_VarDP=0|38|0;DP=39;QUALapprox=1702;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140400,39;VarDP=38 GT:AD:DP:GQ:PL:SB 1:0,38,0:38:99:1702,0,1703:0,0,17,21 +chrX 3466183 . T . . END=3466361 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,838 +chrX 3466362 . T C, 1127.04 . AS_QUALapprox=|1137|0;AS_VarDP=0|34|0;DP=35;QUALapprox=1137;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1137,0,1137:0,0,18,16 +chrX 3466363 . A . . END=3466883 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,626 +chrX 3466884 . A T, 605.04 . AS_QUALapprox=|615|0;AS_VarDP=0|18|0;DP=19;QUALapprox=615;RAW_GT_COUNT=0,0,1;RAW_MQandDP=68400,19;VarDP=18 GT:AD:DP:GQ:PL:SB 1:0,18,0:18:99:615,0,615:0,0,9,9 +chrX 3466885 . T . . END=3466948 GT:DP:GQ:MIN_DP:PL 0:17:99:17:0,467 +chrX 3466949 . C CTTTT, 626.01 . AS_QUALapprox=|636|0;AS_VarDP=0|17|0;DP=24;QUALapprox=636;RAW_GT_COUNT=0,0,1;RAW_MQandDP=77072,24;VarDP=17 GT:AD:DP:GQ:PL:SB 1:0,17,0:17:99:636,0,637:0,0,9,8 +chrX 3466950 . T . . END=3466995 GT:DP:GQ:MIN_DP:PL 0:16:99:16:0,267 +chrX 3466996 . A C, 490.04 . AS_QUALapprox=|500|0;AS_VarDP=0|15|0;DP=17;QUALapprox=500;RAW_GT_COUNT=0,0,1;RAW_MQandDP=61200,17;VarDP=15 GT:AD:DP:GQ:PL:SB 1:0,15,0:15:99:500,0,500:0,0,6,9 +chrX 3466997 . C . . END=3467497 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,413 +chrX 3467498 . C CA, 133.01 . AS_QUALapprox=|143|0;AS_VarDP=0|8|0;DP=19;QUALapprox=143;RAW_GT_COUNT=0,0,1;RAW_MQandDP=63716,19;VarDP=8 GT:AD:DP:GQ:PL:SB 1:0,8,0:8:99:143,0,143:0,0,6,2 +chrX 3467499 . A . . END=3474696 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,432 +chrX 3474697 . T A, 966.04 . AS_QUALapprox=|976|0;AS_VarDP=0|31|0;DP=33;QUALapprox=976;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:976,0,976:0,0,19,12 +chrX 3474698 . A . . END=3481173 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,372 +chrX 3481174 . C T, 1097.04 . AS_QUALapprox=|1107|0;AS_VarDP=1|34|0;BaseQRankSum=-0.269;DP=37;MQRankSum=0.000;QUALapprox=1107;RAW_GT_COUNT=0,0,1;RAW_MQandDP=132304,37;ReadPosRankSum=-0.594;VarDP=35 GT:AD:DP:GQ:PL:SB 1:1,34,0:35:99:1107,0,1142:1,0,14,20 +chrX 3481175 . G . . END=3482451 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,566 +chrX 3482452 . C A, 1042.04 . AS_QUALapprox=|1052|0;AS_VarDP=0|32|0;DP=32;QUALapprox=1052;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1052,0,1052:0,0,19,13 +chrX 3482453 . C . . END=3482953 GT:DP:GQ:MIN_DP:PL 0:27:26:19:0,26 +chrX 3482954 . C T, 960.04 . AS_QUALapprox=|970|0;AS_VarDP=1|29|0;BaseQRankSum=0.000;DP=31;MQRankSum=0.000;QUALapprox=970;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;ReadPosRankSum=0.463;VarDP=30 GT:AD:DP:GQ:PL:SB 1:1,29,0:30:99:970,0,1004:0,1,15,14 +chrX 3482955 . A . . END=3483705 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,620 +chrX 3483706 . TTTCTTTCTTTCTTTCTTTC T, 739.01 . AS_QUALapprox=|749|0;AS_VarDP=0|18|0;DP=19;QUALapprox=749;RAW_GT_COUNT=0,0,1;RAW_MQandDP=65956,19;VarDP=18 GT:AD:DP:GQ:PL:SB 1:0,18,0:18:99:749,0,749:0,0,6,12 +chrX 3483726 . T . . END=3484056 GT:DP:GQ:MIN_DP:PL 0:17:99:17:0,264 +chrX 3484057 . C CTTTCTTT, 567.01 . AS_QUALapprox=|577|0;AS_VarDP=0|14|0;DP=18;QUALapprox=577;RAW_GT_COUNT=0,0,1;RAW_MQandDP=62800,18;VarDP=14 GT:AD:DP:GQ:PL:SB 1:0,14,0:14:99:577,0,577:0,0,8,6 +chrX 3484058 . T . . END=3484489 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,323 +chrX 3484490 . A T, 808.04 . AS_QUALapprox=|818|0;AS_VarDP=0|26|0;DP=29;QUALapprox=818;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:818,0,818:0,0,11,15 +chrX 3484491 . T . . END=3484637 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,804 +chrX 3484638 . T A, 918.04 . AS_QUALapprox=|928|0;AS_VarDP=0|29|0;DP=30;QUALapprox=928;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:928,0,928:0,0,15,14 +chrX 3484639 . T . . END=3486050 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,596 +chrX 3486051 . A G, 919.04 . AS_QUALapprox=|929|0;AS_VarDP=1|28|0;BaseQRankSum=0.000;DP=29;MQRankSum=0.000;QUALapprox=929;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;ReadPosRankSum=0.179;VarDP=29 GT:AD:DP:GQ:PL:SB 1:1,28,0:29:99:929,0,963:1,0,14,14 +chrX 3486052 . A . . END=3486139 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,778 +chrX 3486140 . A C, 688.04 . AS_QUALapprox=|698|0;AS_VarDP=0|22|0;DP=23;QUALapprox=698;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:698,0,698:0,0,10,12 +chrX 3486141 . T . . END=3487270 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,649 +chrX 3487271 . TATATATTATTATGTACAATAATATATAATATATTATTATGTACAATAATATATA T, 796.01 . AS_QUALapprox=|806|0;AS_VarDP=0|18|0;DP=30;QUALapprox=806;RAW_GT_COUNT=0,0,1;RAW_MQandDP=105489,30;VarDP=18 GT:AD:DP:GQ:PL:SB 1:0,18,0:18:99:806,0,806:0,0,13,5 +chrX 3487326 . A . . END=3488048 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,178 +chrX 3488049 . A G, 762.04 . AS_QUALapprox=|772|0;AS_VarDP=1|29|0;BaseQRankSum=1.307;DP=31;MQRankSum=0.000;QUALapprox=772;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;ReadPosRankSum=-1.214;VarDP=30 GT:AD:DP:GQ:PL:SB 1:1,29,0:30:99:772,0,782:0,1,16,13 +chrX 3488050 . T . . END=3489569 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,305 +chrX 3489570 . C T, 903.04 . AS_QUALapprox=|913|0;AS_VarDP=0|29|0;DP=31;QUALapprox=913;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:913,0,913:0,0,15,14 +chrX 3489571 . T . . END=3491522 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,625 +chrX 3491523 . C T, 1187.04 . AS_QUALapprox=|1197|0;AS_VarDP=0|35|0;DP=36;QUALapprox=1197;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129600,36;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,35,0:35:99:1197,0,1197:0,0,17,18 +chrX 3491524 . A . . END=3491698 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,834 +chrX 3491699 . G A, 849.04 . AS_QUALapprox=|859|0;AS_VarDP=0|26|0;DP=27;QUALapprox=859;RAW_GT_COUNT=0,0,1;RAW_MQandDP=96409,27;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:859,0,859:0,0,12,14 +chrX 3491700 . G . . END=3491935 GT:DP:GQ:MIN_DP:PL 0:38:99:38:0,790 +chrX 3491936 . G A, 1094.04 . AS_QUALapprox=|1104|0;AS_VarDP=0|33|0;DP=36;QUALapprox=1104;RAW_GT_COUNT=0,0,1;RAW_MQandDP=128401,36;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1104,0,1104:0,0,17,16 +chrX 3491937 . A . . END=3494491 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,462 +chrX 3494492 . C T, 898.04 . AS_QUALapprox=|908|0;AS_VarDP=0|27|0;DP=28;QUALapprox=908;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:908,0,908:0,0,15,12 +chrX 3494493 . A . . END=3495552 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,412 +chrX 3495553 . T C, 784.04 . AS_QUALapprox=|794|0;AS_VarDP=0|24|0;DP=26;QUALapprox=794;RAW_GT_COUNT=0,0,1;RAW_MQandDP=92916,26;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:794,0,794:0,0,11,13 +chrX 3495554 . T . . END=3495822 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,426 +chrX 3495823 . A G, 819.04 . AS_QUALapprox=|829|0;AS_VarDP=0|25|0;DP=26;QUALapprox=829;RAW_GT_COUNT=0,0,1;RAW_MQandDP=85216,26;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:829,0,829:0,0,15,10 +chrX 3495824 . T . . END=3496583 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,680 +chrX 3496584 . G T, 851.04 . AS_QUALapprox=|861|0;AS_VarDP=0|26|0;DP=28;QUALapprox=861;RAW_GT_COUNT=0,0,1;RAW_MQandDP=91890,28;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:861,0,861:0,0,15,11 +chrX 3496585 . A . . END=3496668 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,804 +chrX 3496669 . C T, 1003.04 . AS_QUALapprox=|1013|0;AS_VarDP=0|30|0;DP=32;QUALapprox=1013;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:1013,0,1013:0,0,16,14 +chrX 3496670 . T . . END=3497668 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,442 +chrX 3497669 . G T, 838.04 . AS_QUALapprox=|848|0;AS_VarDP=0|25|0;DP=27;QUALapprox=848;RAW_GT_COUNT=0,0,1;RAW_MQandDP=96625,27;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:848,0,848:0,0,12,13 +chrX 3497670 . C . . END=3498396 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,843 +chrX 3498397 . G A, 1049.04 . AS_QUALapprox=|1059|0;AS_VarDP=0|33|0;DP=34;QUALapprox=1059;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1059,0,1059:0,0,16,17 +chrX 3498398 . G . . END=3499211 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,858 +chrX 3499212 . G T, 978.04 . AS_QUALapprox=|988|0;AS_VarDP=0|30|0;DP=31;QUALapprox=988;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:988,0,988:0,0,15,15 +chrX 3499213 . A . . END=3502236 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,411 +chrX 3502237 . CA C, 706.01 . AS_QUALapprox=|716|0;AS_VarDP=0|25|0;DP=30;QUALapprox=716;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:716,0,716:0,0,13,12 +chrX 3502239 . A . . END=3503477 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,591 +chrX 3503478 . C T, 942.04 . AS_QUALapprox=|952|0;AS_VarDP=0|30|0;DP=32;QUALapprox=952;RAW_GT_COUNT=0,0,1;RAW_MQandDP=114625,32;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:952,0,952:0,0,17,13 +chrX 3503479 . G . . END=3503580 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,858 +chrX 3503581 . A G, 993.04 . AS_QUALapprox=|1003|0;AS_VarDP=0|30|0;DP=33;QUALapprox=1003;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:1003,0,1003:0,0,15,15 +chrX 3503582 . C . . END=3504087 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,898 +chrX 3504088 . G C, 862.04 . AS_QUALapprox=|872|0;AS_VarDP=0|29|0;DP=32;QUALapprox=872;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:872,0,872:0,0,14,15 +chrX 3504089 . G . . END=3505308 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,522 +chrX 3505309 . A G, 1001.04 . AS_QUALapprox=|1011|0;AS_VarDP=0|30|0;DP=30;QUALapprox=1011;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:1011,0,1011:0,0,12,18 +chrX 3505310 . G . . END=3506301 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,432 +chrX 3506302 . CAAAAAA C, 568.01 . AS_QUALapprox=|578|0;AS_VarDP=2|15|0;DP=25;MQRankSum=-0.183;QUALapprox=578;RAW_GT_COUNT=0,0,1;RAW_MQandDP=87316,25;VarDP=17 GT:AD:DP:GQ:PL:SB 1:2,15,0:17:99:578,0,611:0,2,6,9 +chrX 3506309 . A . . END=3508096 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,391 +chrX 3508097 . CT C, 734.01 . AS_QUALapprox=|744|0;AS_VarDP=0|26|0;DP=30;QUALapprox=744;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:744,0,744:0,0,16,10 +chrX 3508099 . T . . END=3508581 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,834 +chrX 3508582 . C T, 1077.04 . AS_QUALapprox=|1087|0;AS_VarDP=0|33|0;DP=33;QUALapprox=1087;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118116,33;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1087,0,1087:0,0,16,17 +chrX 3508583 . A . . END=3509589 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,496 +chrX 3509590 . C T, 1380.04 . AS_QUALapprox=|1390|0;AS_VarDP=0|42|0;DP=42;QUALapprox=1390;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151200,42;VarDP=42 GT:AD:DP:GQ:PL:SB 1:0,42,0:42:99:1390,0,1390:0,0,26,16 +chrX 3509591 . A . . END=3511597 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,485 +chrX 3511598 . C CA, 382.01 . AS_QUALapprox=|392|0;AS_VarDP=0|17|0;DP=22;QUALapprox=392;RAW_GT_COUNT=0,0,1;RAW_MQandDP=78849,22;VarDP=17 GT:AD:DP:GQ:PL:SB 1:0,17,0:17:99:392,0,392:0,0,9,8 +chrX 3511599 . A . . END=3514031 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,688 +chrX 3514032 . G A, 804.04 . AS_QUALapprox=|814|0;AS_VarDP=0|24|0;DP=25;QUALapprox=814;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:814,0,814:0,0,11,13 +chrX 3514033 . T . . END=3514409 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,649 +chrX 3514410 . G T, 1065.04 . AS_QUALapprox=|1075|0;AS_VarDP=0|33|0;DP=37;QUALapprox=1075;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133200,37;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1075,0,1075:0,0,12,21 +chrX 3514411 . A . . END=3514470 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,923 +chrX 3514471 . T A, 962.04 . AS_QUALapprox=|972|0;AS_VarDP=1|31|0;BaseQRankSum=1.992;DP=34;MQRankSum=0.000;QUALapprox=972;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;ReadPosRankSum=1.084;VarDP=32 GT:AD:DP:GQ:PL:SB 1:1,31,0:32:99:972,0,997:1,0,12,19 +chrX 3514472 . C . . END=3515213 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,735 +chrX 3515214 . C A, 725.04 . AS_QUALapprox=|735|0;AS_VarDP=0|22|0;DP=23;QUALapprox=735;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:735,0,735:0,0,13,9 +chrX 3515215 . C . . END=3515803 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,601 +chrX 3515804 . ATATC A, 1104.01 . AS_QUALapprox=|1114|0;AS_VarDP=0|25|0;DP=26;QUALapprox=1114;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:1114,0,1114:0,0,13,12 +chrX 3515809 . T . . END=3516826 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,461 +chrX 3516827 . AT A, 83.01 . AS_QUALapprox=|93|0;AS_VarDP=1|6|0;BaseQRankSum=0.000;DP=18;MQRankSum=0.000;QUALapprox=93;RAW_GT_COUNT=0,0,1;RAW_MQandDP=64800,18;ReadPosRankSum=0.000;VarDP=7 GT:AD:DP:GQ:PL:SB 1:1,6,0:7:93:93,0,103:1,0,3,3 +chrX 3516829 . T . . END=3517357 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,450 +chrX 3517358 . C G, 818.04 . AS_QUALapprox=|828|0;AS_VarDP=0|26|0;DP=27;QUALapprox=828;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:828,0,828:0,0,18,8 +chrX 3517359 . A . . END=3517567 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,834 +chrX 3517568 . C T, 1086.04 . AS_QUALapprox=|1096|0;AS_VarDP=0|34|0;DP=34;QUALapprox=1096;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1096,0,1096:0,0,17,17 +chrX 3517569 . T . . END=3518513 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,640 +chrX 3518514 . G A, 948.04 . AS_QUALapprox=|958|0;AS_VarDP=0|29|0;DP=29;QUALapprox=958;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:958,0,958:0,0,15,14 +chrX 3518515 . T . . END=3519302 GT:DP:GQ:MIN_DP:PL 0:37:99:37:0,804 +chrX 3519303 . TGAGA T,TGA, 1245.01 . AS_QUALapprox=|304|1255|0;AS_VarDP=0|0|26|0;DP=30;QUALapprox=1255;RAW_GT_COUNT=0,0,1;RAW_MQandDP=107425,30;VarDP=26 GT:AD:DP:GQ:PL:SB 2:0,0,26,0:26:99:1255,951,0,1103:0,0,14,12 +chrX 3519307 . A *,T, 971.04 . AS_QUALapprox=|0|1255|0;AS_VarDP=0|0|26|0;DP=30;QUALapprox=1255;RAW_GT_COUNT=0,0,1;RAW_MQandDP=107425,30;VarDP=26 GT:AD:DP:GQ:PL:SB 2:0,0,26,0:26:99:1255,951,0,1103:0,0,14,12 +chrX 3519308 . G . . END=3519396 GT:DP:GQ:MIN_DP:PL 0:40:99:40:0,1037 +chrX 3519397 . C T, 1156.04 . AS_QUALapprox=|1166|0;AS_VarDP=0|36|0;DP=40;QUALapprox=1166;RAW_GT_COUNT=0,0,1;RAW_MQandDP=144000,40;VarDP=36 GT:AD:DP:GQ:PL:SB 1:0,36,0:36:99:1166,0,1166:0,0,15,21 +chrX 3519398 . A . . END=3520903 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,684 +chrX 3520904 . G A, 1147.04 . AS_QUALapprox=|1157|0;AS_VarDP=2|36|0;BaseQRankSum=1.652;DP=38;MQRankSum=0.000;QUALapprox=1157;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;ReadPosRankSum=0.033;VarDP=38 GT:AD:DP:GQ:PL:SB 1:2,36,0:38:99:1157,0,1201:2,0,23,13 +chrX 3520905 . G . . END=3521957 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,561 +chrX 3521958 . C G, 1264.04 . AS_QUALapprox=|1274|0;AS_VarDP=0|29|0;DP=29;QUALapprox=1274;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:1274,0,1274:0,0,15,14 +chrX 3521959 . A . . END=3521961 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,888 +chrX 3521962 . G A, 1229.04 . AS_QUALapprox=|1239|0;AS_VarDP=0|28|0;DP=28;QUALapprox=1239;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:1239,0,1239:0,0,15,13 +chrX 3521963 . C . . END=3523022 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,535 +chrX 3523023 . A C, 844.04 . AS_QUALapprox=|854|0;AS_VarDP=0|26|0;DP=27;QUALapprox=854;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:854,0,854:0,0,8,18 +chrX 3523024 . T . . END=3523606 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,690 +chrX 3523607 . C T, 824.04 . AS_QUALapprox=|834|0;AS_VarDP=0|26|0;DP=27;QUALapprox=834;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:834,0,834:0,0,13,13 +chrX 3523608 . C . . END=3523878 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,720 +chrX 3523879 . T C, 953.04 . AS_QUALapprox=|963|0;AS_VarDP=0|28|0;DP=28;QUALapprox=963;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:963,0,963:0,0,17,11 +chrX 3523880 . A . . END=3524197 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,873 +chrX 3524198 . C CT, 1066.01 . AS_QUALapprox=|1076|0;AS_VarDP=0|30|0;DP=32;QUALapprox=1076;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:1076,0,1076:0,0,10,20 +chrX 3524199 . C T, 1066.04 . AS_QUALapprox=|1076|0;AS_VarDP=0|30|0;DP=32;QUALapprox=1076;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:1076,0,1076:0,0,10,20 +chrX 3524200 . T . . END=3524346 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,477 +chrX 3524347 . G A, 868.04 . AS_QUALapprox=|878|0;AS_VarDP=0|27|0;DP=29;QUALapprox=878;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:878,0,878:0,0,10,17 +chrX 3524348 . G . . END=3524449 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,440 +chrX 3524450 . G . . END=3524450 GT:DP:GQ:MIN_DP:PL 0:23:14:23:0,14 +chrX 3524451 . A . . END=3524463 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,168 +chrX 3524464 . A . . END=3524464 GT:DP:GQ:MIN_DP:PL 0:27:0:27:0,0 +chrX 3524465 . C . . END=3524608 GT:DP:GQ:MIN_DP:PL 0:64:99:64:0,255 +chrX 3524609 . T . . END=3524609 GT:DP:GQ:MIN_DP:PL 0:58:0:58:0,0 +chrX 3524610 . A . . END=3524709 GT:DP:GQ:MIN_DP:PL 0:70:99:70:0,720 +chrX 3524710 . T TCACCAC, 634.01 . AS_QUALapprox=|644|0;AS_VarDP=2|19|0;BaseQRankSum=2.241;DP=29;MQRankSum=2.359;QUALapprox=644;RAW_GT_COUNT=0,0,1;RAW_MQandDP=74378,29;ReadPosRankSum=0.180;VarDP=21 GT:AD:DP:GQ:PL:SB 1:2,19,0:21:99:644,0,735:1,1,13,6 +chrX 3524711 . C . . END=3524766 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,550 +chrX 3524767 . C CCATCACCACCACCAT, 249.01 . AS_QUALapprox=|259|0;AS_VarDP=2|6|0;BaseQRankSum=-0.431;DP=39;MQRankSum=0.000;QUALapprox=259;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111620,39;ReadPosRankSum=0.045;VarDP=8 GT:AD:DP:GQ:PL:SB 1:2,6,0:8:99:259,0,270:0,2,5,1 +chrX 3524768 . C . . END=3525132 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,406 +chrX 3525133 . C T, 1067.04 . AS_QUALapprox=|1077|0;AS_VarDP=0|32|0;DP=32;QUALapprox=1077;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1077,0,1077:0,0,20,12 +chrX 3525134 . C . . END=3525195 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,645 +chrX 3525196 . A ATTTT, 1028.01 . AS_QUALapprox=|1038|0;AS_VarDP=1|26|0;BaseQRankSum=1.265;DP=30;MQRankSum=0.000;QUALapprox=1038;RAW_GT_COUNT=0,0,1;RAW_MQandDP=106000,30;ReadPosRankSum=-1.028;VarDP=27 GT:AD:DP:GQ:PL:SB 1:1,26,0:27:99:1038,0,1070:1,0,15,11 +chrX 3525197 . G T, 1028.04 . AS_QUALapprox=|1038|0;AS_VarDP=1|26|0;BaseQRankSum=-0.390;DP=30;MQRankSum=0.000;QUALapprox=1038;RAW_GT_COUNT=0,0,1;RAW_MQandDP=106000,30;ReadPosRankSum=-1.067;VarDP=27 GT:AD:DP:GQ:PL:SB 1:1,26,0:27:99:1038,0,1070:1,0,15,11 +chrX 3525198 . T . . END=3527414 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,333 +chrX 3527415 . T C, 600.04 . AS_QUALapprox=|610|0;AS_VarDP=0|19|0;DP=20;QUALapprox=610;RAW_GT_COUNT=0,0,1;RAW_MQandDP=72000,20;VarDP=19 GT:AD:DP:GQ:PL:SB 1:0,19,0:19:99:610,0,610:0,0,11,8 +chrX 3527416 . G . . END=3527651 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,565 +chrX 3527652 . C G, 941.04 . AS_QUALapprox=|951|0;AS_VarDP=0|30|0;DP=30;QUALapprox=951;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:951,0,951:0,0,17,13 +chrX 3527653 . C . . END=3527804 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,909 +chrX 3527805 . A G, 1002.04 . AS_QUALapprox=|1012|0;AS_VarDP=0|31|0;DP=35;QUALapprox=1012;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1012,0,1012:0,0,17,14 +chrX 3527806 . A . . END=3528672 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,530 +chrX 3528673 . T C, 1089.04 . AS_QUALapprox=|1099|0;AS_VarDP=0|34|0;DP=37;QUALapprox=1099;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133200,37;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1099,0,1099:0,0,13,21 +chrX 3528674 . T . . END=3528802 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,571 +chrX 3528803 . C T, 749.04 . AS_QUALapprox=|759|0;AS_VarDP=0|23|0;DP=23;QUALapprox=759;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:759,0,759:0,0,13,10 +chrX 3528804 . A . . END=3528880 GT:DP:GQ:MIN_DP:PL 0:20:99:20:0,565 +chrX 3528881 . G A, 845.04 . AS_QUALapprox=|855|0;AS_VarDP=0|19|0;DP=19;QUALapprox=855;RAW_GT_COUNT=0,0,1;RAW_MQandDP=68400,19;VarDP=19 GT:AD:DP:GQ:PL:SB 1:0,19,0:19:99:855,0,855:0,0,7,12 +chrX 3528882 . A . . END=3528888 GT:DP:GQ:MIN_DP:PL 0:19:99:19:0,532 +chrX 3528889 . A G, 845.04 . AS_QUALapprox=|855|0;AS_VarDP=0|19|0;DP=19;QUALapprox=855;RAW_GT_COUNT=0,0,1;RAW_MQandDP=68400,19;VarDP=19 GT:AD:DP:GQ:PL:SB 1:0,19,0:19:99:855,0,855:0,0,7,12 +chrX 3528890 . A . . END=3529118 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,594 +chrX 3529119 . G T, 989.04 . AS_QUALapprox=|999|0;AS_VarDP=0|30|0;DP=30;QUALapprox=999;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:999,0,999:0,0,17,13 +chrX 3529120 . G . . END=3529172 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,863 +chrX 3529173 . A G, 1147.04 . AS_QUALapprox=|1157|0;AS_VarDP=0|34|0;DP=35;QUALapprox=1157;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1157,0,1157:0,0,21,13 +chrX 3529174 . T . . END=3529266 GT:DP:GQ:MIN_DP:PL 0:42:99:42:0,1137 +chrX 3529267 . T A, 1224.04 . AS_QUALapprox=|1234|0;AS_VarDP=0|37|0;DP=38;QUALapprox=1234;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;VarDP=37 GT:AD:DP:GQ:PL:SB 1:0,37,0:37:99:1234,0,1234:0,0,18,19 +chrX 3529268 . T . . END=3529720 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,844 +chrX 3529721 . C T, 963.04 . AS_QUALapprox=|973|0;AS_VarDP=0|29|0;DP=29;QUALapprox=973;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:973,0,973:0,0,8,21 +chrX 3529722 . A . . END=3529880 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,823 +chrX 3529881 . C T, 963.04 . AS_QUALapprox=|973|0;AS_VarDP=0|28|0;DP=28;QUALapprox=973;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:973,0,973:0,0,13,15 +chrX 3529882 . G . . END=3530338 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,407 +chrX 3530339 . G A, 477.04 . AS_QUALapprox=|487|0;AS_VarDP=0|14|0;DP=14;QUALapprox=487;RAW_GT_COUNT=0,0,1;RAW_MQandDP=50400,14;VarDP=14 GT:AD:DP:GQ:PL:SB 1:0,14,0:14:99:487,0,487:0,0,7,7 +chrX 3530340 . T . . END=3530887 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,427 +chrX 3530888 . T C, 927.04 . AS_QUALapprox=|937|0;AS_VarDP=0|31|0;DP=31;QUALapprox=937;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:937,0,937:0,0,18,13 +chrX 3530889 . G . . END=3531487 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,624 +chrX 3531488 . A G, 794.04 . AS_QUALapprox=|804|0;AS_VarDP=0|24|0;DP=27;QUALapprox=804;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:804,0,804:0,0,14,10 +chrX 3531489 . T . . END=3532108 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,586 +chrX 3532109 . T TA, 857.01 . AS_QUALapprox=|867|0;AS_VarDP=0|31|0;DP=35;QUALapprox=867;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:867,0,867:0,0,16,15 +chrX 3532110 . A . . END=3532525 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,729 +chrX 3532526 . T C, 1041.04 . AS_QUALapprox=|1051|0;AS_VarDP=0|32|0;DP=32;QUALapprox=1051;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1051,0,1051:0,0,18,14 +chrX 3532527 . T . . END=3536214 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,561 +chrX 3536215 . TTGTG T, 816.01 . AS_QUALapprox=|826|0;AS_VarDP=1|19|0;DP=32;MQRankSum=0.000;QUALapprox=826;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=20 GT:AD:DP:GQ:PL:SB 1:1,19,0:20:99:826,0,856:1,0,9,10 +chrX 3536220 . T . . END=3536250 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,747 +chrX 3536251 . G C, 1134.04 . AS_QUALapprox=|1144|0;AS_VarDP=0|28|0;DP=31;QUALapprox=1144;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:1144,0,1144:0,0,14,14 +chrX 3536252 . T . . END=3538664 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,630 +chrX 3538665 . T TGATA, 735.01 . AS_QUALapprox=|745|0;AS_VarDP=0|17|0;DP=25;QUALapprox=745;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=17 GT:AD:DP:GQ:PL:SB 1:0,17,0:17:99:745,0,746:0,0,5,12 +chrX 3538666 . G . . END=3541431 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,516 +chrX 3541432 . C G, 1195.04 . AS_QUALapprox=|1205|0;AS_VarDP=1|38|0;BaseQRankSum=2.063;DP=40;MQRankSum=0.000;QUALapprox=1205;RAW_GT_COUNT=0,0,1;RAW_MQandDP=144000,40;ReadPosRankSum=0.044;VarDP=39 GT:AD:DP:GQ:PL:SB 1:1,38,0:39:99:1205,0,1230:0,1,23,15 +chrX 3541433 . T . . END=3543801 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,515 +chrX 3543802 . GTC G, 316.01 . AS_QUALapprox=|326|0;AS_VarDP=0|10|0;DP=18;QUALapprox=326;RAW_GT_COUNT=0,0,1;RAW_MQandDP=64800,18;VarDP=10 GT:AD:DP:GQ:PL:SB 1:0,10,0:10:99:326,0,326:0,0,3,7 +chrX 3543805 . T . . END=3546862 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,397 +chrX 3546863 . G GGGAA, 240.01 . AS_QUALapprox=|250|0;AS_VarDP=3|10|0;BaseQRankSum=0.577;DP=25;MQRankSum=2.832;QUALapprox=250;RAW_GT_COUNT=0,0,1;RAW_MQandDP=84923,25;ReadPosRankSum=-0.595;VarDP=13 GT:AD:DP:GQ:PL:SB 1:3,10,0:13:99:250,0,392:1,2,8,2 +chrX 3546864 . G . . END=3553719 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,372 +chrX 3553720 . A G, 635.04 . AS_QUALapprox=|645|0;AS_VarDP=0|20|0;DP=21;QUALapprox=645;RAW_GT_COUNT=0,0,1;RAW_MQandDP=65084,21;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:645,0,645:0,0,11,9 +chrX 3553721 . G . . END=3554856 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,576 +chrX 3554857 . C T, 418.04 . AS_QUALapprox=|428|0;AS_VarDP=6|20|0;BaseQRankSum=0.146;DP=26;MQRankSum=3.879;QUALapprox=428;RAW_GT_COUNT=0,0,1;RAW_MQandDP=31764,26;ReadPosRankSum=0.305;VarDP=26 GT:AD:DP:GQ:PL:SB 1:6,20,0:26:99:428,0,645:5,1,12,8 +chrX 3554858 . G . . END=3555972 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,495 +chrX 3555973 . G C, 784.04 . AS_QUALapprox=|794|0;AS_VarDP=0|24|0;DP=25;QUALapprox=794;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82265,25;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:794,0,794:0,0,9,15 +chrX 3555974 . T . . END=3556814 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,622 +chrX 3556815 . C T, 619.04 . AS_QUALapprox=|629|0;AS_VarDP=0|21|0;DP=23;QUALapprox=629;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:629,0,629:0,0,10,11 +chrX 3556816 . A . . END=3565137 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,266 +chrX 3565138 . TA T, 738.01 . AS_QUALapprox=|748|0;AS_VarDP=0|27|0;DP=29;QUALapprox=748;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:748,0,748:0,0,12,15 +chrX 3565140 . A . . END=3565493 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,585 +chrX 3565494 . TAC T, 1092.01 . AS_QUALapprox=|1102|0;AS_VarDP=0|25|0;DP=25;QUALapprox=1102;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:1102,0,1102:0,0,17,8 +chrX 3565497 . A . . END=3565638 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,570 +chrX 3565639 . T C, 670.04 . AS_QUALapprox=|680|0;AS_VarDP=0|21|0;DP=23;QUALapprox=680;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82225,23;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:680,0,680:0,0,13,8 +chrX 3565640 . G . . END=3565744 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,695 +chrX 3565745 . C T, 898.04 . AS_QUALapprox=|908|0;AS_VarDP=0|27|0;DP=27;QUALapprox=908;RAW_GT_COUNT=0,0,1;RAW_MQandDP=96625,27;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:908,0,908:0,0,15,12 +chrX 3565746 . C . . END=3566100 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,894 +chrX 3566101 . A G, 1115.04 . AS_QUALapprox=|1125|0;AS_VarDP=0|35|0;DP=38;QUALapprox=1125;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,35,0:35:99:1125,0,1125:0,0,13,22 +chrX 3566102 . A . . END=3566766 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,620 +chrX 3566767 . A C, 644.04 . AS_QUALapprox=|654|0;AS_VarDP=0|21|0;DP=23;QUALapprox=654;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:654,0,654:0,0,11,10 +chrX 3566768 . G . . END=3567097 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,655 +chrX 3567098 . A C, 868.04 . AS_QUALapprox=|878|0;AS_VarDP=0|27|0;DP=27;QUALapprox=878;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:878,0,878:0,0,10,17 +chrX 3567099 . C . . END=3567543 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,690 +chrX 3567544 . C G, 1010.04 . AS_QUALapprox=|1020|0;AS_VarDP=2|33|0;BaseQRankSum=2.579;DP=36;MQRankSum=0.000;QUALapprox=1020;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129600,36;ReadPosRankSum=-0.782;VarDP=35 GT:AD:DP:GQ:PL:SB 1:2,33,0:35:99:1020,0,1069:1,1,11,22 +chrX 3567545 . T . . END=3568247 GT:DP:GQ:MIN_DP:PL 0:38:99:38:0,884 +chrX 3568248 . G A, 953.04 . AS_QUALapprox=|963|0;AS_VarDP=0|28|0;DP=28;QUALapprox=963;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:963,0,963:0,0,19,9 +chrX 3568249 . T . . END=3568812 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,516 +chrX 3568813 . CT C, 783.01 . AS_QUALapprox=|793|0;AS_VarDP=0|26|0;DP=29;QUALapprox=793;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:793,0,793:0,0,18,8 +chrX 3568815 . T . . END=3568952 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,799 +chrX 3568953 . A C, 848.04 . AS_QUALapprox=|858|0;AS_VarDP=0|28|0;DP=28;QUALapprox=858;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:858,0,858:0,0,16,12 +chrX 3568954 . A . . END=3569708 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,844 +chrX 3569709 . C G, 1052.04 . AS_QUALapprox=|1062|0;AS_VarDP=1|34|0;BaseQRankSum=-0.427;DP=38;MQRankSum=0.000;QUALapprox=1062;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;ReadPosRankSum=-1.436;VarDP=35 GT:AD:DP:GQ:PL:SB 1:1,34,0:35:99:1062,0,1097:0,1,16,18 +chrX 3569710 . C . . END=3570007 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,591 +chrX 3570008 . G GA, 409.01 . AS_QUALapprox=|419|0;AS_VarDP=0|10|0;DP=18;QUALapprox=419;RAW_GT_COUNT=0,0,1;RAW_MQandDP=64564,18;VarDP=10 GT:AD:DP:GQ:PL:SB 1:0,10,0:10:99:419,0,420:0,0,5,5 +chrX 3570009 . A . . END=3570026 GT:DP:GQ:MIN_DP:PL 0:10:99:10:0,303 +chrX 3570027 . A ATATG, 380.01 . AS_QUALapprox=|390|0;AS_VarDP=0|9|0;DP=12;QUALapprox=390;RAW_GT_COUNT=0,0,1;RAW_MQandDP=39940,12;VarDP=9 GT:AD:DP:GQ:PL:SB 1:0,9,0:9:99:390,0,390:0,0,5,4 +chrX 3570028 . T . . END=3570060 GT:DP:GQ:MIN_DP:PL 0:11:99:11:0,112 +chrX 3570061 . A . . END=3570061 GT:DP:GQ:MIN_DP:PL 0:8:0:8:0,0 +chrX 3570062 . T . . END=3570069 GT:DP:GQ:MIN_DP:PL 0:8:90:8:0,90 +chrX 3570070 . T . . END=3570071 GT:DP:GQ:MIN_DP:PL 0:7:0:7:0,0 +chrX 3570072 . T . . END=3570116 GT:DP:GQ:MIN_DP:PL 0:5:25:5:0,25 +chrX 3570117 . G . . END=3570117 GT:DP:GQ:MIN_DP:PL 0:9:15:9:0,15 +chrX 3570118 . T . . END=3570133 GT:DP:GQ:MIN_DP:PL 0:10:45:10:0,45 +chrX 3570134 . G . . END=3570134 GT:DP:GQ:MIN_DP:PL 0:14:0:14:0,0 +chrX 3570135 . T . . END=3570161 GT:DP:GQ:MIN_DP:PL 0:20:99:20:0,279 +chrX 3570162 . A . . END=3570162 GT:DP:GQ:MIN_DP:PL 0:19:0:19:0,0 +chrX 3570163 . T . . END=3570169 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,291 +chrX 3570170 . G . . END=3570170 GT:DP:GQ:MIN_DP:PL 0:22:0:22:0,0 +chrX 3570171 . T . . END=3570241 GT:DP:GQ:MIN_DP:PL 0:30:25:29:0,25 +chrX 3570242 . A . . END=3570242 GT:DP:GQ:MIN_DP:PL 0:33:0:33:0,0 +chrX 3570243 . T . . END=3570254 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,495 +chrX 3570255 . T . . END=3570256 GT:DP:GQ:MIN_DP:PL 0:35:0:35:0,0 +chrX 3570257 . T . . END=3570309 GT:DP:GQ:MIN_DP:PL 0:31:90:31:0,90 +chrX 3570310 . G . . END=3570310 GT:DP:GQ:MIN_DP:PL 0:24:0:24:0,0 +chrX 3570311 . T . . END=3570311 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,690 +chrX 3570312 . G . . END=3570312 GT:DP:GQ:MIN_DP:PL 0:23:0:23:0,0 +chrX 3570313 . T . . END=3571113 GT:DP:GQ:MIN_DP:PL 0:23:35:21:0,35 +chrX 3571114 . T A, 745.04 . AS_QUALapprox=|755|0;AS_VarDP=0|22|0;DP=22;QUALapprox=755;RAW_GT_COUNT=0,0,1;RAW_MQandDP=79200,22;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:755,0,755:0,0,16,6 +chrX 3571115 . G . . END=3571785 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,620 +chrX 3571786 . G C, 1012.04 . AS_QUALapprox=|1022|0;AS_VarDP=0|30|0;DP=31;QUALapprox=1022;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:1022,0,1022:0,0,14,16 +chrX 3571787 . T . . END=3573019 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,624 +chrX 3573020 . G T, 912.04 . AS_QUALapprox=|922|0;AS_VarDP=0|29|0;DP=31;QUALapprox=922;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:922,0,922:0,0,14,15 +chrX 3573021 . A . . END=3573288 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,909 +chrX 3573289 . G C, 1150.04 . AS_QUALapprox=|1160|0;AS_VarDP=0|37|0;DP=37;QUALapprox=1160;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133200,37;VarDP=37 GT:AD:DP:GQ:PL:SB 1:0,37,0:37:99:1160,0,1160:0,0,16,21 +chrX 3573290 . T . . END=3573670 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,769 +chrX 3573671 . A G, 963.04 . AS_QUALapprox=|973|0;AS_VarDP=0|30|0;DP=32;QUALapprox=973;RAW_GT_COUNT=0,0,1;RAW_MQandDP=114304,32;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:973,0,973:0,0,18,12 +chrX 3573672 . A . . END=3573740 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,899 +chrX 3573741 . T C, 948.04 . AS_QUALapprox=|958|0;AS_VarDP=0|29|0;DP=30;QUALapprox=958;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:958,0,958:0,0,19,10 +chrX 3573742 . G . . END=3574468 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,626 +chrX 3574469 . G A, 938.04 . AS_QUALapprox=|948|0;AS_VarDP=0|29|0;DP=30;QUALapprox=948;RAW_GT_COUNT=0,0,1;RAW_MQandDP=105076,30;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:948,0,948:0,0,14,15 +chrX 3574470 . C . . END=3576820 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,535 +chrX 3576821 . C A, 853.04 . AS_QUALapprox=|863|0;AS_VarDP=0|25|0;DP=26;QUALapprox=863;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:863,0,863:0,0,8,17 +chrX 3576822 . A . . END=3576845 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,716 +chrX 3576846 . A G, 923.04 . AS_QUALapprox=|933|0;AS_VarDP=0|28|0;DP=29;QUALapprox=933;RAW_GT_COUNT=0,0,1;RAW_MQandDP=101200,29;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:933,0,933:0,0,11,17 +chrX 3576847 . A . . END=3577487 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,630 +chrX 3577488 . C T, 1250.04 . AS_QUALapprox=|1260|0;AS_VarDP=0|39|0;DP=41;QUALapprox=1260;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147600,41;VarDP=39 GT:AD:DP:GQ:PL:SB 1:0,39,0:39:99:1260,0,1260:0,0,13,26 +chrX 3577489 . G . . END=3577985 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,651 +chrX 3577986 . G A, 907.04 . AS_QUALapprox=|917|0;AS_VarDP=0|27|0;DP=30;QUALapprox=917;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:917,0,917:0,0,10,17 +chrX 3577987 . T . . END=3579044 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,461 +chrX 3579045 . C G, 760.04 . AS_QUALapprox=|770|0;AS_VarDP=0|23|0;DP=23;QUALapprox=770;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:770,0,770:0,0,9,14 +chrX 3579046 . T . . END=3579749 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,581 +chrX 3579750 . AAAAG A, 889.01 . AS_QUALapprox=|899|0;AS_VarDP=0|20|0;DP=22;QUALapprox=899;RAW_GT_COUNT=0,0,1;RAW_MQandDP=76625,22;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:899,0,899:0,0,7,13 +chrX 3579755 . A . . END=3580515 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,530 +chrX 3580516 . C T, 814.04 . AS_QUALapprox=|824|0;AS_VarDP=0|25|0;DP=25;QUALapprox=824;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:824,0,824:0,0,11,14 +chrX 3580517 . T . . END=3581997 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,532 +chrX 3581998 . G A, 1037.04 . AS_QUALapprox=|1047|0;AS_VarDP=0|33|0;DP=33;QUALapprox=1047;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1047,0,1047:0,0,18,15 +chrX 3581999 . T . . END=3582956 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,709 +chrX 3582957 . A G, 758.04 . AS_QUALapprox=|768|0;AS_VarDP=0|24|0;DP=25;QUALapprox=768;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:768,0,768:0,0,12,12 +chrX 3582958 . A . . END=3583054 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,739 +chrX 3583055 . A G, 859.04 . AS_QUALapprox=|869|0;AS_VarDP=0|25|0;DP=25;QUALapprox=869;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:869,0,869:0,0,10,15 +chrX 3583056 . G . . END=3583870 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,566 +chrX 3583871 . G C, 688.04 . AS_QUALapprox=|698|0;AS_VarDP=0|22|0;DP=22;QUALapprox=698;RAW_GT_COUNT=0,0,1;RAW_MQandDP=79200,22;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:698,0,698:0,0,13,9 +chrX 3583872 . G . . END=3584125 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,530 +chrX 3584126 . TGAGA T, 1078.01 . AS_QUALapprox=|1088|0;AS_VarDP=0|25|0;DP=25;QUALapprox=1088;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:1088,0,1088:0,0,12,13 +chrX 3584131 . G . . END=3584697 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,804 +chrX 3584698 . A G, 1051.04 . AS_QUALapprox=|1061|0;AS_VarDP=0|33|0;DP=35;QUALapprox=1061;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1061,0,1061:0,0,18,15 +chrX 3584699 . T . . END=3584854 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,858 +chrX 3584855 . CA C, 966.01 . AS_QUALapprox=|976|0;AS_VarDP=0|32|0;DP=33;QUALapprox=976;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:976,0,976:0,0,17,15 +chrX 3584857 . A . . END=3585537 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,714 +chrX 3585538 . CTT C, 923.01 . AS_QUALapprox=|933|0;AS_VarDP=0|25|0;DP=29;QUALapprox=933;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:933,0,933:0,0,15,10 +chrX 3585541 . T . . END=3587411 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,486 +chrX 3587412 . A G, 1155.04 . AS_QUALapprox=|1165|0;AS_VarDP=0|37|0;DP=39;QUALapprox=1165;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140400,39;VarDP=37 GT:AD:DP:GQ:PL:SB 1:0,37,0:37:99:1165,0,1165:0,0,17,20 +chrX 3587413 . T . . END=3590377 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,501 +chrX 3590378 . A G, 664.04 . AS_QUALapprox=|674|0;AS_VarDP=0|20|0;DP=20;QUALapprox=674;RAW_GT_COUNT=0,0,1;RAW_MQandDP=72000,20;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:674,0,674:0,0,9,11 +chrX 3590379 . T . . END=3590524 GT:DP:GQ:MIN_DP:PL 0:21:44:21:0,44 +chrX 3590525 . C CA,CAAAAAAAAAA, 132.01 . AS_QUALapprox=|142|3|0;AS_VarDP=1|6|2|0;BaseQRankSum=0.566;DP=16;MQRankSum=-0.140;QUALapprox=142;RAW_GT_COUNT=0,0,1;RAW_MQandDP=55600,16;ReadPosRankSum=0.282;VarDP=9 GT:AD:DP:GQ:PL:SB 1:1,6,2,0:9:99:142,0,139,186:0,1,5,3 +chrX 3590526 . A . . END=3591225 GT:DP:GQ:MIN_DP:PL 0:26:84:26:0,84 +chrX 3591226 . T C, 500.04 . AS_QUALapprox=|510|0;AS_VarDP=1|19|0;BaseQRankSum=0.868;DP=21;MQRankSum=3.329;QUALapprox=510;RAW_GT_COUNT=0,0,1;RAW_MQandDP=73613,21;ReadPosRankSum=0.870;VarDP=20 GT:AD:DP:GQ:PL:SB 1:1,19,0:20:99:510,0,535:1,0,5,14 +chrX 3591227 . G . . END=3591286 GT:DP:GQ:MIN_DP:PL 0:18:99:18:0,352 +chrX 3591287 . G GA, 611.01 . AS_QUALapprox=|621|0;AS_VarDP=0|20|0;DP=22;QUALapprox=621;RAW_GT_COUNT=0,0,1;RAW_MQandDP=76765,22;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:621,0,621:0,0,5,15 +chrX 3591288 . A . . END=3591740 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,446 +chrX 3591741 . C T, 680.04 . AS_QUALapprox=|690|0;AS_VarDP=0|21|0;DP=22;QUALapprox=690;RAW_GT_COUNT=0,0,1;RAW_MQandDP=78625,22;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:690,0,690:0,0,12,9 +chrX 3591742 . G . . END=3591807 GT:DP:GQ:MIN_DP:PL 0:19:99:19:0,536 +chrX 3591808 . CTGCT C, 755.01 . AS_QUALapprox=|765|0;AS_VarDP=0|17|0;DP=18;QUALapprox=765;RAW_GT_COUNT=0,0,1;RAW_MQandDP=64800,18;VarDP=17 GT:AD:DP:GQ:PL:SB 1:0,17,0:17:99:765,0,765:0,0,10,7 +chrX 3591813 . G . . END=3595223 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,481 +chrX 3595224 . AATATG A, 1510.01 . AS_QUALapprox=|1520|0;AS_VarDP=0|34|0;DP=36;QUALapprox=1520;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129600,36;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1520,0,1520:0,0,14,20 +chrX 3595230 . A . . END=3595516 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,571 +chrX 3595517 . C G, 566.04 . AS_QUALapprox=|576|0;AS_VarDP=0|18|0;DP=21;QUALapprox=576;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75600,21;VarDP=18 GT:AD:DP:GQ:PL:SB 1:0,18,0:18:99:576,0,576:0,0,9,9 +chrX 3595518 . A . . END=3595635 GT:DP:GQ:MIN_DP:PL 0:22:99:22:0,620 +chrX 3595636 . AC A, 1205.01 . AS_QUALapprox=|1215|0;AS_VarDP=0|31|0;DP=33;QUALapprox=1215;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1215,0,1215:0,0,15,16 +chrX 3595638 . A . . END=3596725 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,571 +chrX 3596726 . T C,TATCC, 550.04 . AS_QUALapprox=|560|0|0;AS_VarDP=0|16|0|0;DP=24;QUALapprox=560;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=16 GT:AD:DP:GQ:PL:SB 1:0,16,0,0:16:99:560,0,944,752:0,0,10,6 +chrX 3596727 . A . . END=3597294 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,530 +chrX 3597295 . G A, 745.04 . AS_QUALapprox=|755|0;AS_VarDP=0|22|0;DP=25;QUALapprox=755;RAW_GT_COUNT=0,0,1;RAW_MQandDP=88386,25;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:755,0,755:0,0,8,14 +chrX 3597296 . G . . END=3597346 GT:DP:GQ:MIN_DP:PL 0:20:99:20:0,565 +chrX 3597347 . C T, 576.04 . AS_QUALapprox=|586|0;AS_VarDP=1|18|0;BaseQRankSum=2.440;DP=19;MQRankSum=-0.171;QUALapprox=586;RAW_GT_COUNT=0,0,1;RAW_MQandDP=67361,19;ReadPosRankSum=1.005;VarDP=19 GT:AD:DP:GQ:PL:SB 1:1,18,0:19:99:586,0,596:0,1,6,12 +chrX 3597348 . G . . END=3597477 GT:DP:GQ:MIN_DP:PL 0:20:99:20:0,551 +chrX 3597478 . CAA C, 484.01 . AS_QUALapprox=|494|0;AS_VarDP=1|18|0;DP=26;MQRankSum=-0.287;QUALapprox=494;RAW_GT_COUNT=0,0,1;RAW_MQandDP=88063,26;VarDP=19 GT:AD:DP:GQ:PL:SB 1:1,18,0:19:99:494,0,525:0,1,13,5 +chrX 3597481 . A . . END=3597498 GT:DP:GQ:MIN_DP:PL 0:22:99:22:0,710 +chrX 3597499 . A C, 930.04 . AS_QUALapprox=|940|0;AS_VarDP=0|23|0;DP=24;QUALapprox=940;RAW_GT_COUNT=0,0,1;RAW_MQandDP=80863,24;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:940,0,940:0,0,17,6 +chrX 3597500 . A . . END=3598591 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,225 +chrX 3598592 . A AAAAGAAAG,AAAAAAAAGAAAG,AAAAAAAAAAAAAAAGAAAG, 624.01 . AS_QUALapprox=|0|634|388|0;AS_VarDP=0|0|4|0|0;DP=24;QUALapprox=634;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=4 GT:AD:DP:GQ:PL:SB 2:0,0,4,0,0:4:99:634,645,0,246,535:0,0,2,2 +chrX 3598593 . A . . END=3599060 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,303 +chrX 3599061 . G GT, 549.01 . AS_QUALapprox=|559|0;AS_VarDP=0|19|0;DP=23;QUALapprox=559;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;VarDP=19 GT:AD:DP:GQ:PL:SB 1:0,19,0:19:99:559,0,559:0,0,14,5 +chrX 3599062 . T . . END=3599709 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,452 +chrX 3599710 . C T, 1418.04 . AS_QUALapprox=|1428|0;AS_VarDP=0|32|0;DP=32;QUALapprox=1428;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1428,0,1428:0,0,13,19 +chrX 3599711 . A . . END=3599719 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,991 +chrX 3599720 . T G, 1468.04 . AS_QUALapprox=|1478|0;AS_VarDP=0|34|0;DP=34;QUALapprox=1478;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1478,0,1478:0,0,13,21 +chrX 3599721 . T . . END=3599894 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,763 +chrX 3599895 . A G, 842.04 . AS_QUALapprox=|852|0;AS_VarDP=0|28|0;DP=28;QUALapprox=852;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:852,0,852:0,0,17,11 +chrX 3599896 . T . . END=3600334 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,536 +chrX 3600335 . C T, 1117.04 . AS_QUALapprox=|1127|0;AS_VarDP=0|33|0;DP=35;QUALapprox=1127;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1127,0,1127:0,0,21,12 +chrX 3600336 . A . . END=3600435 GT:DP:GQ:MIN_DP:PL 0:42:99:42:0,1211 +chrX 3600436 . G T, 1201.04 . AS_QUALapprox=|1211|0;AS_VarDP=1|37|0;BaseQRankSum=2.382;DP=39;MQRankSum=0.000;QUALapprox=1211;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140400,39;ReadPosRankSum=0.456;VarDP=38 GT:AD:DP:GQ:PL:SB 1:1,37,0:38:99:1211,0,1236:1,0,21,16 +chrX 3600437 . T . . END=3600512 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,945 +chrX 3600513 . G GTGTAAAGTTTCAGTCA, 1588.01 . AS_QUALapprox=|1598|0;AS_VarDP=0|36|0;DP=39;QUALapprox=1598;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140400,39;VarDP=36 GT:AD:DP:GQ:PL:SB 1:0,36,0:36:99:1598,0,1599:0,0,17,19 +chrX 3600514 . T . . END=3600522 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,929 +chrX 3600523 . A AAAAGTTCTGGAGATCTGCTGGAC, 1076.01 . AS_QUALapprox=|1086|0;AS_VarDP=0|25|0;DP=35;QUALapprox=1086;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:1086,0,1088:0,0,13,12 +chrX 3600524 . A . . END=3601277 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,358 +chrX 3601278 . CT C, 353.01 . AS_QUALapprox=|363|0;AS_VarDP=0|15|0;DP=24;QUALapprox=363;RAW_GT_COUNT=0,0,1;RAW_MQandDP=85825,24;VarDP=15 GT:AD:DP:GQ:PL:SB 1:0,15,0:15:99:363,0,363:0,0,9,6 +chrX 3601280 . T . . END=3601857 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,421 +chrX 3601858 . T A,TA, 557.04 . AS_QUALapprox=|567|81|0;AS_VarDP=0|15|0|0;DP=20;QUALapprox=567;RAW_GT_COUNT=0,0,1;RAW_MQandDP=72000,20;VarDP=15 GT:AD:DP:GQ:PL:SB 1:0,15,0,0:15:99:567,0,486,526:0,0,7,8 +chrX 3601859 . A . . END=3602376 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,661 +chrX 3602377 . TA T, 1820.01 . AS_QUALapprox=|1830|0;AS_VarDP=0|41|0;DP=42;QUALapprox=1830;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151200,42;VarDP=41 GT:AD:DP:GQ:PL:SB 1:0,41,0:41:99:1830,0,1830:0,0,19,22 +chrX 3602379 . A . . END=3602383 GT:DP:GQ:MIN_DP:PL 0:41:99:41:0,1196 +chrX 3602384 . AATTAT A, 1865.01 . AS_QUALapprox=|1875|0;AS_VarDP=0|42|0;DP=42;QUALapprox=1875;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151200,42;VarDP=42 GT:AD:DP:GQ:PL:SB 1:0,42,0:42:99:1875,0,1875:0,0,19,23 +chrX 3602390 . A . . END=3604130 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,219 +chrX 3604131 . G C, 884.04 . AS_QUALapprox=|894|0;AS_VarDP=0|26|0;DP=27;QUALapprox=894;RAW_GT_COUNT=0,0,1;RAW_MQandDP=94624,27;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:894,0,894:0,0,15,11 +chrX 3604132 . A . . END=3605011 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,745 +chrX 3605012 . GAC G, 392.01 . AS_QUALapprox=|402|0;AS_VarDP=1|16|0;DP=31;MQRankSum=0.000;QUALapprox=402;RAW_GT_COUNT=0,0,1;RAW_MQandDP=109393,31;VarDP=17 GT:AD:DP:GQ:PL:SB 1:1,16,0:17:99:402,0,412:0,1,6,10 +chrX 3605015 . A . . END=3606267 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,694 +chrX 3606268 . T C, 977.04 . AS_QUALapprox=|987|0;AS_VarDP=0|32|0;DP=32;QUALapprox=987;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:987,0,987:0,0,19,13 +chrX 3606269 . G . . END=3606451 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,923 +chrX 3606452 . T C, 1137.04 . AS_QUALapprox=|1147|0;AS_VarDP=0|35|0;DP=35;QUALapprox=1147;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,35,0:35:99:1147,0,1147:0,0,17,18 +chrX 3606453 . A . . END=3606561 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,770 +chrX 3606562 . T C, 794.04 . AS_QUALapprox=|804|0;AS_VarDP=0|24|0;DP=24;QUALapprox=804;RAW_GT_COUNT=0,0,1;RAW_MQandDP=85250,24;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:804,0,804:0,0,9,15 +chrX 3606563 . G . . END=3606695 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,739 +chrX 3606696 . TAC T, 1759.01 . AS_QUALapprox=|1769|0;AS_VarDP=0|40|0;DP=40;QUALapprox=1769;RAW_GT_COUNT=0,0,1;RAW_MQandDP=144000,40;VarDP=40 GT:AD:DP:GQ:PL:SB 1:0,40,0:40:99:1769,0,1769:0,0,20,20 +chrX 3606699 . A . . END=3608577 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,272 +chrX 3608578 . T TAC, 252.01 . AS_QUALapprox=|262|0;AS_VarDP=2|12|0;BaseQRankSum=-0.669;DP=17;MQRankSum=0.000;QUALapprox=262;RAW_GT_COUNT=0,0,1;RAW_MQandDP=61200,17;ReadPosRankSum=1.372;VarDP=14 GT:AD:DP:GQ:PL:SB 1:2,12,0:14:99:262,0,321:2,0,4,8 +chrX 3608579 . A . . END=3618469 GT:DP:GQ:MIN_DP:PL 0:31:90:31:0,90 +chrX 3618470 . T TAAGAG, 1214.01 . AS_QUALapprox=|1224|0;AS_VarDP=0|28|0;DP=29;QUALapprox=1224;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:1224,0,1224:0,0,13,15 +chrX 3618471 . T . . END=3639103 GT:DP:GQ:MIN_DP:PL 0:8:30:6:0,30 +chrX 3639104 . T . . END=3639104 GT:DP:GQ:MIN_DP:PL 0:6:10:6:0,10 +chrX 3639105 . G . . END=3639105 GT:DP:GQ:MIN_DP:PL 0:8:99:8:0,258 +chrX 3639106 . T . . END=3639106 GT:DP:GQ:MIN_DP:PL 0:8:0:8:0,0 +chrX 3639107 . G . . END=3639109 GT:DP:GQ:MIN_DP:PL 0:10:99:10:0,252 +chrX 3639110 . T . . END=3639110 GT:DP:GQ:MIN_DP:PL 0:10:0:10:0,0 +chrX 3639111 . G . . END=3639113 GT:DP:GQ:MIN_DP:PL 0:11:99:11:0,272 +chrX 3639114 . T . . END=3639114 GT:DP:GQ:MIN_DP:PL 0:9:0:9:0,0 +chrX 3639115 . G . . END=3639117 GT:DP:GQ:MIN_DP:PL 0:11:99:11:0,318 +chrX 3639118 . T . . END=3639118 GT:DP:GQ:MIN_DP:PL 0:8:0:8:0,0 +chrX 3639119 . G . . END=3639298 GT:DP:GQ:MIN_DP:PL 0:2:35:1:0,35 +chrX 3639299 . C . . END=3639299 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3639300 . G . . END=3639305 GT:DP:GQ:MIN_DP:PL 0:2:25:2:0,25 +chrX 3639306 . T . . END=3639306 GT:DP:GQ:MIN_DP:PL 0:3:6:3:0,6 +chrX 3639307 . G . . END=3639315 GT:DP:GQ:MIN_DP:PL 0:3:45:3:0,45 +chrX 3639316 . A . . END=3639316 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 3639317 . A . . END=3639326 GT:DP:GQ:MIN_DP:PL 0:3:20:2:0,20 +chrX 3639327 . T . . END=3639327 GT:DP:GQ:MIN_DP:PL 0:3:0:3:0,0 +chrX 3639328 . G . . END=3639330 GT:DP:GQ:MIN_DP:PL 0:3:25:3:0,25 +chrX 3639331 . A . . END=3639331 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 3639332 . G . . END=3644399 GT:DP:GQ:MIN_DP:PL 0:26:90:26:0,90 +chrX 3644400 . C . . END=3644400 GT:DP:GQ:MIN_DP:PL 0:27:1:27:0,1 +chrX 3644401 . A . . END=3648605 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,565 +chrX 3648606 . C CTG, 628.01 . AS_QUALapprox=|638|0;AS_VarDP=0|23|0;DP=34;QUALapprox=638;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:638,0,638:0,0,12,11 +chrX 3648607 . T . . END=3650519 GT:DP:GQ:MIN_DP:PL 0:30:94:30:0,94 +chrX 3650520 . C CA, 277.01 . AS_QUALapprox=|287|0;AS_VarDP=0|14|0;DP=25;QUALapprox=287;RAW_GT_COUNT=0,0,1;RAW_MQandDP=84952,25;VarDP=14 GT:AD:DP:GQ:PL:SB 1:0,14,0:14:99:287,0,288:0,0,4,10 +chrX 3650521 . A . . END=3659722 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,387 +chrX 3659723 . T G, 755.04 . AS_QUALapprox=|765|0;AS_VarDP=2|21|0;BaseQRankSum=3.395;DP=23;MQRankSum=-0.466;QUALapprox=765;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75796,23;ReadPosRankSum=-1.586;VarDP=23 GT:AD:DP:GQ:PL:SB 1:2,21,0:23:99:765,0,791:0,2,12,9 +chrX 3659724 . T . . END=3659726 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,720 +chrX 3659727 . TTG T, 755.01 . AS_QUALapprox=|765|0;AS_VarDP=2|21|0;BaseQRankSum=-0.154;DP=23;MQRankSum=-0.466;QUALapprox=765;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75796,23;ReadPosRankSum=-1.584;VarDP=23 GT:AD:DP:GQ:PL:SB 1:2,21,0:23:99:765,0,791:0,2,12,9 +chrX 3659730 . T . . END=3659809 GT:DP:GQ:MIN_DP:PL 0:15:99:15:0,331 +chrX 3659810 . C T, 560.04 . AS_QUALapprox=|570|0;AS_VarDP=0|17|0;DP=17;QUALapprox=570;RAW_GT_COUNT=0,0,1;RAW_MQandDP=61200,17;VarDP=17 GT:AD:DP:GQ:PL:SB 1:0,17,0:17:99:570,0,570:0,0,8,9 +chrX 3659811 . G . . END=3661070 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,596 +chrX 3661071 . T A, 777.04 . AS_QUALapprox=|787|0;AS_VarDP=0|25|0;DP=27;QUALapprox=787;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75003,27;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:787,0,787:0,0,9,16 +chrX 3661072 . A . . END=3661437 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,795 +chrX 3661438 . C T, 897.04 . AS_QUALapprox=|907|0;AS_VarDP=0|27|0;DP=27;QUALapprox=907;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:907,0,907:0,0,6,21 +chrX 3661439 . T . . END=3661514 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,645 +chrX 3661515 . C G, 685.04 . AS_QUALapprox=|695|0;AS_VarDP=0|20|0;DP=20;QUALapprox=695;RAW_GT_COUNT=0,0,1;RAW_MQandDP=72000,20;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:695,0,695:0,0,8,12 +chrX 3661516 . A . . END=3661595 GT:DP:GQ:MIN_DP:PL 0:17:99:17:0,438 +chrX 3661596 . G GA, 361.01 . AS_QUALapprox=|371|0;AS_VarDP=0|15|0;DP=18;QUALapprox=371;RAW_GT_COUNT=0,0,1;RAW_MQandDP=64800,18;VarDP=15 GT:AD:DP:GQ:PL:SB 1:0,15,0:15:99:371,0,371:0,0,6,9 +chrX 3661597 . A . . END=3661815 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,446 +chrX 3661816 . A G, 808.04 . AS_QUALapprox=|818|0;AS_VarDP=0|26|0;DP=26;QUALapprox=818;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:818,0,818:0,0,13,13 +chrX 3661817 . G . . END=3662260 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,619 +chrX 3662261 . A G, 828.04 . AS_QUALapprox=|838|0;AS_VarDP=0|28|0;DP=29;QUALapprox=838;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:838,0,838:0,0,13,15 +chrX 3662262 . G . . END=3662423 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,749 +chrX 3662424 . A G, 1031.04 . AS_QUALapprox=|1041|0;AS_VarDP=0|31|0;DP=35;QUALapprox=1041;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1041,0,1241:0,0,17,13 +chrX 3662425 . G . . END=3662461 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,992 +chrX 3662462 . A G, 1067.04 . AS_QUALapprox=|1077|0;AS_VarDP=0|33|0;DP=34;QUALapprox=1077;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1077,0,1077:0,0,19,14 +chrX 3662463 . A . . END=3662689 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,360 +chrX 3662690 . A G, 335.04 . AS_QUALapprox=|345|0;AS_VarDP=0|12|0;DP=16;QUALapprox=345;RAW_GT_COUNT=0,0,1;RAW_MQandDP=56704,16;VarDP=12 GT:AD:DP:GQ:PL:SB 1:0,12,0:12:99:345,0,345:0,0,6,6 +chrX 3662691 . T . . END=3662693 GT:DP:GQ:MIN_DP:PL 0:13:99:13:0,362 +chrX 3662694 . C CA, 311.01 . AS_QUALapprox=|321|0;AS_VarDP=0|18|0;DP=25;QUALapprox=321;RAW_GT_COUNT=0,0,1;RAW_MQandDP=85013,25;VarDP=18 GT:AD:DP:GQ:PL:SB 1:0,18,0:18:99:321,0,322:0,0,7,11 +chrX 3662695 . A . . END=3662753 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,700 +chrX 3662754 . C T, 978.04 . AS_QUALapprox=|988|0;AS_VarDP=0|29|0;DP=29;QUALapprox=988;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:988,0,988:0,0,15,14 +chrX 3662755 . C . . END=3662997 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,590 +chrX 3662998 . T TAAA, 539.01 . AS_QUALapprox=|549|0;AS_VarDP=0|14|0;DP=28;QUALapprox=549;RAW_GT_COUNT=0,0,1;RAW_MQandDP=98800,28;VarDP=14 GT:AD:DP:GQ:PL:SB 1:0,14,0:14:99:549,0,550:0,0,7,7 +chrX 3662999 . A . . END=3663029 GT:DP:GQ:MIN_DP:PL 0:22:99:22:0,651 +chrX 3663030 . G A, 794.04 . AS_QUALapprox=|804|0;AS_VarDP=0|25|0;DP=25;QUALapprox=804;RAW_GT_COUNT=0,0,1;RAW_MQandDP=88000,25;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:804,0,804:0,0,13,12 +chrX 3663031 . G . . END=3663200 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,806 +chrX 3663201 . A G, 937.04 . AS_QUALapprox=|947|0;AS_VarDP=0|30|0;DP=31;QUALapprox=947;RAW_GT_COUNT=0,0,1;RAW_MQandDP=109810,31;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:947,0,947:0,0,11,19 +chrX 3663202 . G . . END=3663381 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,645 +chrX 3663382 . T C, 620.04 . AS_QUALapprox=|630|0;AS_VarDP=0|19|0;DP=20;QUALapprox=630;RAW_GT_COUNT=0,0,1;RAW_MQandDP=72000,20;VarDP=19 GT:AD:DP:GQ:PL:SB 1:0,19,0:19:99:630,0,630:0,0,15,4 +chrX 3663383 . G . . END=3663467 GT:DP:GQ:MIN_DP:PL 0:20:99:20:0,315 +chrX 3663468 . A AC, 464.01 . AS_QUALapprox=|474|0;AS_VarDP=0|11|0;DP=16;QUALapprox=474;RAW_GT_COUNT=0,0,1;RAW_MQandDP=51816,16;VarDP=11 GT:AD:DP:GQ:PL:SB 1:0,11,0:11:99:474,0,507:0,0,4,5 +chrX 3663469 . A *,ACACACACAC, 464.01 . AS_QUALapprox=|0|474|0;AS_VarDP=0|0|9|0;DP=16;QUALapprox=474;RAW_GT_COUNT=0,0,1;RAW_MQandDP=51816,16;VarDP=9 GT:AD:DP:GQ:PL:SB 2:0,0,9,0:9:99:474,539,0,507:0,0,4,5 +chrX 3663470 . A . . END=3663470 GT:DP:GQ:MIN_DP:PL 0:12:99:12:0,278 +chrX 3663471 . A C, 464.04 . AS_QUALapprox=|474|0;AS_VarDP=0|11|0;DP=15;QUALapprox=474;RAW_GT_COUNT=0,0,1;RAW_MQandDP=48216,15;VarDP=11 GT:AD:DP:GQ:PL:SB 1:0,11,0:11:99:474,0,507:0,0,4,5 +chrX 3663472 . A . . END=3664335 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,119 +chrX 3664336 . G A, 883.04 . AS_QUALapprox=|893|0;AS_VarDP=0|27|0;DP=27;QUALapprox=893;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:893,0,893:0,0,12,15 +chrX 3664337 . A . . END=3664661 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,843 +chrX 3664662 . C T, 1142.04 . AS_QUALapprox=|1152|0;AS_VarDP=0|34|0;DP=35;QUALapprox=1152;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1152,0,1152:0,0,20,14 +chrX 3664663 . G . . END=3665408 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,477 +chrX 3665409 . C G, 913.04 . AS_QUALapprox=|923|0;AS_VarDP=0|28|0;DP=29;QUALapprox=923;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:923,0,923:0,0,14,14 +chrX 3665410 . A . . END=3665726 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,556 +chrX 3665727 . A G, 804.04 . AS_QUALapprox=|814|0;AS_VarDP=0|26|0;DP=28;QUALapprox=814;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:814,0,814:0,0,12,14 +chrX 3665728 . G . . END=3665920 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,694 +chrX 3665921 . T TGGATGG, 629.01 . AS_QUALapprox=|639|0;AS_VarDP=0|15|0;DP=22;QUALapprox=639;RAW_GT_COUNT=0,0,1;RAW_MQandDP=79200,22;VarDP=15 GT:AD:DP:GQ:PL:SB 1:0,15,0:15:99:639,0,639:0,0,9,6 +chrX 3665922 . G . . END=3665990 GT:DP:GQ:MIN_DP:PL 0:18:99:18:0,485 +chrX 3665991 . A T, 600.04 . AS_QUALapprox=|610|0;AS_VarDP=0|20|0;DP=21;QUALapprox=610;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75600,21;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:610,0,610:0,0,10,10 +chrX 3665992 . G . . END=3666019 GT:DP:GQ:MIN_DP:PL 0:22:99:22:0,559 +chrX 3666020 . T G, 846.04 . AS_QUALapprox=|856|0;AS_VarDP=0|27|0;DP=28;QUALapprox=856;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:856,0,856:0,0,13,14 +chrX 3666021 . T . . END=3666151 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,790 +chrX 3666152 . ATT A, 470.01 . AS_QUALapprox=|480|0;AS_VarDP=0|15|0;DP=28;QUALapprox=480;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97904,28;VarDP=15 GT:AD:DP:GQ:PL:SB 1:0,15,0:15:99:480,0,480:0,0,11,4 +chrX 3666155 . T . . END=3666247 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,674 +chrX 3666248 . A G, 1342.04 . AS_QUALapprox=|1352|0;AS_VarDP=0|32|0;DP=34;QUALapprox=1352;RAW_GT_COUNT=0,0,1;RAW_MQandDP=120400,34;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1352,0,1352:0,0,17,15 +chrX 3666249 . G . . END=3666258 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,907 +chrX 3666259 . G A, 1308.04 . AS_QUALapprox=|1318|0;AS_VarDP=0|30|0;DP=32;QUALapprox=1318;RAW_GT_COUNT=0,0,1;RAW_MQandDP=113200,32;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:1318,0,1318:0,0,14,16 +chrX 3666260 . T . . END=3666910 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,317 +chrX 3666911 . T TAAA,TAAAA, 651.01 . AS_QUALapprox=|661|473|0;AS_VarDP=1|11|1|0;BaseQRankSum=-0.781;DP=29;MQRankSum=0.000;QUALapprox=661;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100321,29;ReadPosRankSum=0.134;VarDP=13 GT:AD:DP:GQ:PL:SB 1:1,11,1,0:13:99:661,0,188,454:0,1,3,9 +chrX 3666912 . A . . END=3667423 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,567 +chrX 3667424 . T C, 652.04 . AS_QUALapprox=|662|0;AS_VarDP=0|20|0;DP=21;QUALapprox=662;RAW_GT_COUNT=0,0,1;RAW_MQandDP=52815,21;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:662,0,662:0,0,12,8 +chrX 3667425 . G . . END=3668273 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,506 +chrX 3668274 . A G, 1245.04 . AS_QUALapprox=|1255|0;AS_VarDP=1|41|0;BaseQRankSum=-0.577;DP=42;MQRankSum=0.000;QUALapprox=1255;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151200,42;ReadPosRankSum=1.568;VarDP=42 GT:AD:DP:GQ:PL:SB 1:1,41,0:42:99:1255,0,1290:1,0,25,16 +chrX 3668275 . G . . END=3672154 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,472 +chrX 3672155 . A G, 962.04 . AS_QUALapprox=|972|0;AS_VarDP=0|32|0;DP=33;QUALapprox=972;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:972,0,972:0,0,17,15 +chrX 3672156 . T . . END=3677326 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,323 +chrX 3677327 . C CT, 361.01 . AS_QUALapprox=|371|0;AS_VarDP=0|17|0;DP=27;QUALapprox=371;RAW_GT_COUNT=0,0,1;RAW_MQandDP=95329,27;VarDP=17 GT:AD:DP:GQ:PL:SB 1:0,17,0:17:99:371,0,371:0,0,11,6 +chrX 3677328 . T . . END=3689538 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,377 +chrX 3689539 . C T, 1306.04 . AS_QUALapprox=|1316|0;AS_VarDP=0|39|0;DP=40;QUALapprox=1316;RAW_GT_COUNT=0,0,1;RAW_MQandDP=144000,40;VarDP=39 GT:AD:DP:GQ:PL:SB 1:0,39,0:39:99:1316,0,1316:0,0,21,18 +chrX 3689540 . G . . END=3689803 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,834 +chrX 3689804 . T C, 902.04 . AS_QUALapprox=|912|0;AS_VarDP=0|30|0;DP=30;QUALapprox=912;RAW_GT_COUNT=0,0,1;RAW_MQandDP=106034,30;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:912,0,912:0,0,12,18 +chrX 3689805 . G . . END=3689869 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,660 +chrX 3689870 . A G, 1151.04 . AS_QUALapprox=|1161|0;AS_VarDP=0|27|0;DP=28;QUALapprox=1161;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97938,28;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:1161,0,1161:0,0,12,15 +chrX 3689871 . G . . END=3689893 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,643 +chrX 3689894 . G A, 1162.04 . AS_QUALapprox=|1172|0;AS_VarDP=0|28|0;DP=28;QUALapprox=1172;RAW_GT_COUNT=0,0,1;RAW_MQandDP=99329,28;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:1172,0,1172:0,0,10,18 +chrX 3689895 . T . . END=3701482 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,182 +chrX 3701483 . G A, 1231.04 . AS_QUALapprox=|1241|0;AS_VarDP=1|39|0;BaseQRankSum=-0.438;DP=45;MQRankSum=0.000;QUALapprox=1241;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162000,45;ReadPosRankSum=-0.866;VarDP=40 GT:AD:DP:GQ:PL:SB 1:1,39,0:40:99:1241,0,1275:0,1,22,17 +chrX 3701484 . C . . END=3701617 GT:DP:GQ:MIN_DP:PL 0:43:99:43:0,1245 +chrX 3701618 . G C, 1295.04 . AS_QUALapprox=|1305|0;AS_VarDP=0|41|0;DP=41;QUALapprox=1305;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147600,41;VarDP=41 GT:AD:DP:GQ:PL:SB 1:0,41,0:41:99:1305,0,1305:0,0,18,23 +chrX 3701619 . A . . END=3701975 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,670 +chrX 3701976 . A G, 873.04 . AS_QUALapprox=|883|0;AS_VarDP=0|28|0;DP=28;QUALapprox=883;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100449,28;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:883,0,883:0,0,16,12 +chrX 3701977 . G . . END=3703668 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,575 +chrX 3703669 . GT G, 164.01 . AS_QUALapprox=|174|0;AS_VarDP=0|8|0;DP=14;QUALapprox=174;RAW_GT_COUNT=0,0,1;RAW_MQandDP=24811,14;VarDP=8 GT:AD:DP:GQ:PL:SB 1:0,8,0:8:99:174,0,175:0,0,2,6 +chrX 3703671 . T . . END=3714989 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,461 +chrX 3714990 . C T, 1095.04 . AS_QUALapprox=|1105|0;AS_VarDP=0|33|0;DP=33;QUALapprox=1105;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1105,0,1105:0,0,19,14 +chrX 3714991 . C . . END=3734141 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,323 +chrX 3734142 . C CT, 245.01 . AS_QUALapprox=|255|0;AS_VarDP=0|14|0;DP=28;QUALapprox=255;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82650,28;VarDP=14 GT:AD:DP:GQ:PL:SB 1:0,14,0:14:99:255,0,255:0,0,5,9 +chrX 3734143 . T . . END=3740842 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,164 +chrX 3740843 . G GAAAA, 782.01 . AS_QUALapprox=|792|0;AS_VarDP=0|18|0;DP=20;QUALapprox=792;RAW_GT_COUNT=0,0,1;RAW_MQandDP=65813,20;VarDP=18 GT:AD:DP:GQ:PL:SB 1:0,18,0:18:99:792,0,792:0,0,5,13 +chrX 3740844 . A . . END=3741162 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,293 +chrX 3741163 . T C, 1141.04 . AS_QUALapprox=|1151|0;AS_VarDP=0|35|0;DP=36;QUALapprox=1151;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126818,36;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,35,0:35:99:1151,0,1151:0,0,27,8 +chrX 3741164 . G . . END=3743805 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,287 +chrX 3743806 . A C, 337.04 . AS_QUALapprox=|347|0;AS_VarDP=0|11|0;DP=19;QUALapprox=347;RAW_GT_COUNT=0,0,1;RAW_MQandDP=63397,19;VarDP=11 GT:AD:DP:GQ:PL:SB 1:0,11,0:11:99:347,0,407:0,0,2,5 +chrX 3743807 . T . . END=3749324 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,540 +chrX 3749325 . A G, 818.04 . AS_QUALapprox=|828|0;AS_VarDP=0|26|0;DP=26;QUALapprox=828;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:828,0,828:0,0,16,10 +chrX 3749326 . G . . END=3752390 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,606 +chrX 3752391 . A T, 1038.04 . AS_QUALapprox=|1048|0;AS_VarDP=1|35|0;BaseQRankSum=-0.553;DP=39;MQRankSum=0.000;QUALapprox=1048;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140400,39;ReadPosRankSum=1.156;VarDP=36 GT:AD:DP:GQ:PL:SB 1:1,35,0:36:99:1048,0,1083:1,0,18,17 +chrX 3752392 . T . . END=3752603 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,278 +chrX 3752604 . GA G, 305.01 . AS_QUALapprox=|315|0;AS_VarDP=0|7|0;DP=7;QUALapprox=315;RAW_GT_COUNT=0,0,1;RAW_MQandDP=15846,7;VarDP=7 GT:AD:DP:GQ:PL:SB 1:0,7,0:7:99:315,0,315:0,0,2,5 +chrX 3752606 . T TCA, 305.01 . AS_QUALapprox=|315|0;AS_VarDP=0|7|0;DP=7;QUALapprox=315;RAW_GT_COUNT=0,0,1;RAW_MQandDP=15846,7;VarDP=7 GT:AD:DP:GQ:PL:SB 1:0,7,0:7:99:315,0,315:0,0,2,5 +chrX 3752607 . G . . END=3752608 GT:DP:GQ:MIN_DP:PL 0:7:99:7:0,233 +chrX 3752609 . GA G, 305.01 . AS_QUALapprox=|315|0;AS_VarDP=0|7|0;DP=7;QUALapprox=315;RAW_GT_COUNT=0,0,1;RAW_MQandDP=15846,7;VarDP=7 GT:AD:DP:GQ:PL:SB 1:0,7,0:7:99:315,0,315:0,0,2,5 +chrX 3752611 . T . . END=3752616 GT:DP:GQ:MIN_DP:PL 0:7:90:7:0,90 +chrX 3752617 . C T, 305.04 . AS_QUALapprox=|315|0;AS_VarDP=0|7|0;DP=7;QUALapprox=315;RAW_GT_COUNT=0,0,1;RAW_MQandDP=15846,7;VarDP=7 GT:AD:DP:GQ:PL:SB 1:0,7,0:7:99:315,0,315:0,0,2,5 +chrX 3752618 . A . . END=3752622 GT:DP:GQ:MIN_DP:PL 0:6:90:6:0,90 +chrX 3752623 . G T, 305.04 . AS_QUALapprox=|315|0;AS_VarDP=0|7|0;DP=7;QUALapprox=315;RAW_GT_COUNT=0,0,1;RAW_MQandDP=15846,7;VarDP=7 GT:AD:DP:GQ:PL:SB 1:0,7,0:7:99:315,0,315:0,0,2,5 +chrX 3752624 . G . . END=3752626 GT:DP:GQ:MIN_DP:PL 0:5:99:5:0,135 +chrX 3752627 . A T, 215.04 . AS_QUALapprox=|225|0;AS_VarDP=0|5|0;DP=5;QUALapprox=225;RAW_GT_COUNT=0,0,1;RAW_MQandDP=8646,5;VarDP=5 GT:AD:DP:GQ:PL:SB 1:0,5,0:5:99:225,0,225:0,0,2,3 +chrX 3752628 . G . . END=3752633 GT:DP:GQ:MIN_DP:PL 0:3:94:3:0,94 +chrX 3752634 . T C, 215.04 . AS_QUALapprox=|225|0;AS_VarDP=0|5|0;DP=5;QUALapprox=225;RAW_GT_COUNT=0,0,1;RAW_MQandDP=13489,5;VarDP=5 GT:AD:DP:GQ:PL:SB 1:0,5,0:5:99:225,0,225:0,0,3,2 +chrX 3752635 . C . . END=3752636 GT:DP:GQ:MIN_DP:PL 0:5:99:5:0,154 +chrX 3752637 . C T, 215.04 . AS_QUALapprox=|225|0;AS_VarDP=0|5|0;DP=5;QUALapprox=225;RAW_GT_COUNT=0,0,1;RAW_MQandDP=13489,5;VarDP=5 GT:AD:DP:GQ:PL:SB 1:0,5,0:5:99:225,0,225:0,0,3,2 +chrX 3752638 . G . . END=3752644 GT:DP:GQ:MIN_DP:PL 0:5:99:5:0,135 +chrX 3752645 . C T, 215.04 . AS_QUALapprox=|225|0;AS_VarDP=0|5|0;DP=5;QUALapprox=225;RAW_GT_COUNT=0,0,1;RAW_MQandDP=13489,5;VarDP=5 GT:AD:DP:GQ:PL:SB 1:0,5,0:5:99:225,0,225:0,0,3,2 +chrX 3752646 . G . . END=3752652 GT:DP:GQ:MIN_DP:PL 0:5:99:5:0,135 +chrX 3752653 . A G, 215.04 . AS_QUALapprox=|225|0;AS_VarDP=0|5|0;DP=5;QUALapprox=225;RAW_GT_COUNT=0,0,1;RAW_MQandDP=13489,5;VarDP=5 GT:AD:DP:GQ:PL:SB 1:0,5,0:5:99:225,0,225:0,0,3,2 +chrX 3752654 . G . . END=3752660 GT:DP:GQ:MIN_DP:PL 0:3:70:3:0,70 +chrX 3752661 . A G, 260.04 . AS_QUALapprox=|270|0;AS_VarDP=0|6|0;DP=6;QUALapprox=270;RAW_GT_COUNT=0,0,1;RAW_MQandDP=21600,6;VarDP=6 GT:AD:DP:GQ:PL:SB 1:0,6,0:6:99:270,0,270:0,0,4,2 +chrX 3752662 . C . . END=3752663 GT:DP:GQ:MIN_DP:PL 0:6:99:6:0,174 +chrX 3752664 . T C, 305.04 . AS_QUALapprox=|315|0;AS_VarDP=0|7|0;DP=7;QUALapprox=315;RAW_GT_COUNT=0,0,1;RAW_MQandDP=25200,7;VarDP=7 GT:AD:DP:GQ:PL:SB 1:0,7,0:7:99:315,0,315:0,0,5,2 +chrX 3752665 . T G, 305.04 . AS_QUALapprox=|315|0;AS_VarDP=0|7|0;DP=7;QUALapprox=315;RAW_GT_COUNT=0,0,1;RAW_MQandDP=25200,7;VarDP=7 GT:AD:DP:GQ:PL:SB 1:0,7,0:7:99:315,0,315:0,0,5,2 +chrX 3752666 . C . . END=3752669 GT:DP:GQ:MIN_DP:PL 0:7:99:7:0,233 +chrX 3752670 . A G, 395.04 . AS_QUALapprox=|405|0;AS_VarDP=0|9|0;DP=9;QUALapprox=405;RAW_GT_COUNT=0,0,1;RAW_MQandDP=32400,9;VarDP=9 GT:AD:DP:GQ:PL:SB 1:0,9,0:9:99:405,0,405:0,0,6,3 +chrX 3752671 . G A, 395.04 . AS_QUALapprox=|405|0;AS_VarDP=0|9|0;DP=9;QUALapprox=405;RAW_GT_COUNT=0,0,1;RAW_MQandDP=32400,9;VarDP=9 GT:AD:DP:GQ:PL:SB 1:0,9,0:9:99:405,0,405:0,0,6,3 +chrX 3752672 . T C, 395.04 . AS_QUALapprox=|405|0;AS_VarDP=0|9|0;DP=9;QUALapprox=405;RAW_GT_COUNT=0,0,1;RAW_MQandDP=32400,9;VarDP=9 GT:AD:DP:GQ:PL:SB 1:0,9,0:9:99:405,0,405:0,0,6,3 +chrX 3752673 . C . . END=3752676 GT:DP:GQ:MIN_DP:PL 0:9:99:9:0,293 +chrX 3752677 . T C, 429.04 . AS_QUALapprox=|439|0;AS_VarDP=0|10|0;DP=14;QUALapprox=439;RAW_GT_COUNT=0,0,1;RAW_MQandDP=50400,14;VarDP=10 GT:AD:DP:GQ:PL:SB 1:0,10,0:10:99:439,0,439:0,0,7,3 +chrX 3752678 . A . . END=3752761 GT:DP:GQ:MIN_DP:PL 0:20:99:20:0,282 +chrX 3752762 . C CT, 468.01 . AS_QUALapprox=|478|0;AS_VarDP=2|21|0;BaseQRankSum=-0.479;DP=38;MQRankSum=0.000;QUALapprox=478;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;ReadPosRankSum=-0.218;VarDP=23 GT:AD:DP:GQ:PL:SB 1:2,21,0:23:99:478,0,518:2,0,10,11 +chrX 3752763 . T . . END=3753096 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,704 +chrX 3753097 . A G, 842.04 . AS_QUALapprox=|852|0;AS_VarDP=0|28|0;DP=29;QUALapprox=852;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:852,0,852:0,0,13,15 +chrX 3753098 . G . . END=3754430 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,571 +chrX 3754431 . C T, 617.04 . AS_QUALapprox=|627|0;AS_VarDP=1|20|0;BaseQRankSum=-0.272;DP=25;MQRankSum=-2.288;QUALapprox=627;RAW_GT_COUNT=0,0,1;RAW_MQandDP=43962,25;ReadPosRankSum=0.413;VarDP=21 GT:AD:DP:GQ:PL:SB 1:1,20,0:21:99:627,0,662:1,0,14,6 +chrX 3754432 . T . . END=3754547 GT:DP:GQ:MIN_DP:PL 0:22:99:22:0,638 +chrX 3754548 . G A, 858.04 . AS_QUALapprox=|868|0;AS_VarDP=0|28|0;DP=29;QUALapprox=868;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86567,29;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:868,0,868:0,0,12,16 +chrX 3754549 . A . . END=3759014 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,135 +chrX 3759015 . T TCATC, 193.01 . AS_QUALapprox=|203|0;AS_VarDP=2|8|0;BaseQRankSum=1.701;DP=18;MQRankSum=0.000;QUALapprox=203;RAW_GT_COUNT=0,0,1;RAW_MQandDP=64800,18;ReadPosRankSum=-0.370;VarDP=10 GT:AD:DP:GQ:PL:SB 1:2,8,0:10:99:203,0,223:2,0,5,3 +chrX 3759016 . C . . END=3775245 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,237 +chrX 3775246 . ATTTTTTT A, 211.01 . AS_QUALapprox=|221|0;AS_VarDP=1|7|0;BaseQRankSum=-0.157;DP=33;MQRankSum=-0.157;QUALapprox=221;RAW_GT_COUNT=0,0,1;RAW_MQandDP=109078,33;ReadPosRankSum=0.887;VarDP=8 GT:AD:DP:GQ:PL:SB 1:1,7,0:8:99:221,0,249:1,0,4,3 +chrX 3775254 . T . . END=3783684 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,297 +chrX 3783685 . G A, 1116.04 . AS_QUALapprox=|1126|0;AS_VarDP=0|35|0;DP=36;QUALapprox=1126;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129600,36;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,35,0:35:99:1126,0,1126:0,0,17,18 +chrX 3783686 . G . . END=3784509 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,704 +chrX 3784510 . A G, 1062.04 . AS_QUALapprox=|1072|0;AS_VarDP=0|32|0;DP=33;QUALapprox=1072;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118225,33;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1072,0,1072:0,0,15,17 +chrX 3784511 . T . . END=3785698 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,501 +chrX 3785699 . G C, 968.04 . AS_QUALapprox=|978|0;AS_VarDP=0|29|0;DP=29;QUALapprox=978;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:978,0,978:0,0,16,13 +chrX 3785700 . A . . END=3792701 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,253 +chrX 3792702 . T A, 768.04 . AS_QUALapprox=|778|0;AS_VarDP=0|23|0;DP=26;QUALapprox=778;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:778,0,778:0,0,11,12 +chrX 3792703 . G . . END=3800502 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,561 +chrX 3800503 . A AT, 208.01 . AS_QUALapprox=|218|0;AS_VarDP=0|14|0;DP=26;QUALapprox=218;RAW_GT_COUNT=0,0,1;RAW_MQandDP=88841,26;VarDP=14 GT:AD:DP:GQ:PL:SB 1:0,14,0:14:99:218,0,218:0,0,8,6 +chrX 3800504 . T . . END=3805611 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,99 +chrX 3805612 . CAAAAAAA C,CA, 607.01 . AS_QUALapprox=|617|397|0;AS_VarDP=0|13|2|0;DP=27;QUALapprox=617;RAW_GT_COUNT=0,0,1;RAW_MQandDP=92736,27;VarDP=15 GT:AD:DP:GQ:PL:SB 1:0,13,2,0:15:99:617,0,220,451:0,0,9,6 +chrX 3805620 . A . . END=3810085 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,436 +chrX 3810086 . T TAC, 881.01 . AS_QUALapprox=|891|0;AS_VarDP=0|27|0;DP=31;QUALapprox=891;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108625,31;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:891,0,891:0,0,14,13 +chrX 3810087 . A . . END=3820545 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,387 +chrX 3820546 . A AAAAAAC, 1355.01 . AS_QUALapprox=|1365|0;AS_VarDP=0|31|0;DP=36;QUALapprox=1365;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129600,36;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1365,0,1366:0,0,12,19 +chrX 3820547 . A . . END=3828516 GT:DP:GQ:MIN_DP:PL 0:28:35:3:0,35 +chrX 3828517 . C T, 864.04 . AS_QUALapprox=|874|0;AS_VarDP=1|26|0;BaseQRankSum=3.177;DP=27;MQRankSum=-0.727;QUALapprox=874;RAW_GT_COUNT=0,0,1;RAW_MQandDP=91003,27;ReadPosRankSum=-0.450;VarDP=27 GT:AD:DP:GQ:PL:SB 1:1,26,0:27:99:874,0,884:1,0,15,11 +chrX 3828518 . G . . END=3829572 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,438 +chrX 3829573 . A G, 412.04 . AS_QUALapprox=|422|0;AS_VarDP=0|13|0;DP=13;QUALapprox=422;RAW_GT_COUNT=0,0,1;RAW_MQandDP=17218,13;VarDP=13 GT:AD:DP:GQ:PL:SB 1:0,13,0:13:99:422,0,422:0,0,8,5 +chrX 3829574 . G . . END=3831735 GT:DP:GQ:MIN_DP:PL 0:2:35:1:0,35 +chrX 3831736 . G . . END=3831736 GT:DP:GQ:MIN_DP:PL 0:2:10:2:0,10 +chrX 3831737 . G . . END=3831930 GT:DP:GQ:MIN_DP:PL 0:2:20:1:0,20 +chrX 3831931 . A . . END=3831931 GT:DP:GQ:MIN_DP:PL 0:2:10:2:0,10 +chrX 3831932 . C . . END=3831978 GT:DP:GQ:MIN_DP:PL 0:2:35:1:0,35 +chrX 3831979 . T . . END=3831979 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3831980 . C . . END=3831981 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3831982 . T . . END=3831982 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3831983 . T . . END=3831983 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3831984 . T . . END=3831984 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3831985 . G . . END=3831988 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3831989 . T . . END=3831989 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3831990 . G . . END=3832010 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3832011 . C . . END=3832210 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3832211 . A . . END=3832403 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3832404 . T . . END=3832416 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3832417 . A . . END=3832419 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3832420 . T . . END=3832420 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3832421 . A . . END=3832946 GT:DP:GQ:MIN_DP:PL 0:3:35:1:0,35 +chrX 3832947 . T . . END=3835355 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3835356 . C . . END=3835377 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3835378 . T . . END=3835378 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3835379 . T . . END=3835382 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3835383 . C . . END=3835383 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3835384 . C . . END=3835404 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3835405 . C . . END=3835405 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3835406 . C . . END=3835409 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3835410 . G . . END=3835410 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3835411 . G . . END=3835416 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3835417 . G . . END=3835417 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3835418 . C . . END=3835422 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3835423 . G . . END=3835423 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3835424 . T . . END=3835427 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3835428 . G . . END=3835428 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3835429 . G . . END=3835430 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3835431 . C . . END=3835431 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3835432 . A . . END=3835433 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3835434 . G . . END=3835434 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3835435 . G . . END=3835438 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3835439 . C . . END=3835439 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3835440 . T . . END=3835441 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3835442 . G . . END=3835443 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3835444 . C . . END=3835448 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3835449 . G . . END=3835643 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3835644 . A . . END=3836599 GT:DP:GQ:MIN_DP:PL 0:2:25:1:0,25 +chrX 3836600 . G . . END=3836601 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3836602 . A . . END=3836603 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3836604 . G . . END=3836605 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3836606 . T . . END=3836606 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3836607 . A . . END=3836607 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3836608 . A . . END=3836608 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3836609 . G . . END=3836628 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3836629 . G . . END=3836643 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3836644 . G . . END=3836644 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3836645 . A . . END=3836655 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3836656 . G . . END=3836656 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3836657 . A . . END=3836791 GT:DP:GQ:MIN_DP:PL 0:2:20:1:0,20 +chrX 3836792 . G . . END=3836792 GT:DP:GQ:MIN_DP:PL 0:2:10:2:0,10 +chrX 3836793 . C . . END=3837530 GT:DP:GQ:MIN_DP:PL 0:2:35:1:0,35 +chrX 3837531 . C . . END=3837563 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3837564 . C . . END=3837565 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3837566 . G . . END=3837566 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3837567 . G . . END=3838350 GT:DP:GQ:MIN_DP:PL 0:2:20:1:0,20 +chrX 3838351 . GA G, 241.01 . AS_QUALapprox=|251|0;AS_VarDP=2|11|0;BaseQRankSum=-0.530;DP=13;MQRankSum=1.465;QUALapprox=251;RAW_GT_COUNT=0,0,1;RAW_MQandDP=17884,13;ReadPosRankSum=1.593;VarDP=13 GT:AD:DP:GQ:PL:SB 1:2,11,0:13:99:251,0,285:2,0,8,3 +chrX 3838353 . A . . END=3838812 GT:DP:GQ:MIN_DP:PL 0:20:99:20:0,135 +chrX 3838813 . T C, 144.04 . AS_QUALapprox=|154|0;AS_VarDP=0|5|0;DP=5;QUALapprox=154;RAW_GT_COUNT=0,0,1;RAW_MQandDP=3461,5;VarDP=5 GT:AD:DP:GQ:PL:SB 1:0,5,0:5:99:154,0,154:0,0,5,0 +chrX 3838814 . G . . END=3839583 GT:DP:GQ:MIN_DP:PL 0:6:35:1:0,35 +chrX 3839584 . T . . END=3841711 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3841712 . G . . END=3841714 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3841715 . G . . END=3841715 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3841716 . T . . END=3841716 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3841717 . A . . END=3841718 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3841719 . C . . END=3841720 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3841721 . T . . END=3841721 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3841722 . T . . END=3841725 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3841726 . C . . END=3841729 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3841730 . T . . END=3841730 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3841731 . G . . END=3841733 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3841734 . A . . END=3841745 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3841746 . C . . END=3841746 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3841747 . T . . END=3841747 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3841748 . T . . END=3841752 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3841753 . A . . END=3841756 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3841757 . A . . END=3841757 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3841758 . T . . END=3841761 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3841762 . G . . END=3841764 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3841765 . C . . END=3841765 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3841766 . T . . END=3841766 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3841767 . G . . END=3841769 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3841770 . A . . END=3841771 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3841772 . T . . END=3841772 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3841773 . C . . END=3841773 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3841774 . A . . END=3841781 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3841782 . C . . END=3841783 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3841784 . T . . END=3841802 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3841803 . C . . END=3841803 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3841804 . T . . END=3841821 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3841822 . C . . END=3841822 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3841823 . A . . END=3841823 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3841824 . C . . END=3841824 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3841825 . T . . END=3841829 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3841830 . G . . END=3841830 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3841831 . A . . END=3841833 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3841834 . G . . END=3841834 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3841835 . T . . END=3841845 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3841846 . G . . END=3841908 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3841909 . A . . END=3843868 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3843869 . C . . END=3843869 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3843870 . G . . END=3843912 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3843913 . A . . END=3843913 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3843914 . G . . END=3844012 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3844013 . T . . END=3844013 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3844014 . G . . END=3844019 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3844020 . G . . END=3844020 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3844021 . C . . END=3844027 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3844028 . A . . END=3844028 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3844029 . C . . END=3844031 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3844032 . T . . END=3844032 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3844033 . G . . END=3844045 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3844046 . C . . END=3847644 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3847645 . G . . END=3847805 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3847806 . C . . END=3847806 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3847807 . C . . END=3847811 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3847812 . A . . END=3847812 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3847813 . T . . END=3847814 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3847815 . A . . END=3847815 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3847816 . A . . END=3847826 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3847827 . A . . END=3847827 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3847828 . C . . END=3847841 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3847842 . A . . END=3847843 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3847844 . T . . END=3847847 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3847848 . A . . END=3847848 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3847849 . G . . END=3847857 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3847858 . G . . END=3847858 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3847859 . T . . END=3847866 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3847867 . A . . END=3847867 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3847868 . C . . END=3847869 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3847870 . G . . END=3847870 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3847871 . C . . END=3847875 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3847876 . G . . END=3847876 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3847877 . G . . END=3847881 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3847882 . G . . END=3847945 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3847946 . T . . END=3848189 GT:DP:GQ:MIN_DP:PL 0:3:35:1:0,35 +chrX 3848190 . CTGTTTT C, 349.01 . AS_QUALapprox=|359|0;AS_VarDP=0|9|0;DP=10;QUALapprox=359;RAW_GT_COUNT=0,0,1;RAW_MQandDP=6250,10;VarDP=9 GT:AD:DP:GQ:PL:SB 1:0,9,0:9:99:359,0,359:0,0,6,3 +chrX 3848197 . T . . END=3848643 GT:DP:GQ:MIN_DP:PL 0:9:45:9:0,45 +chrX 3848644 . C . . END=3848655 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3848656 . G . . END=3848683 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3848684 . A . . END=3848684 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3848685 . G . . END=3848693 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3848694 . T . . END=3848694 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3848695 . G . . END=3848727 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3848728 . A . . END=3848728 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3848729 . A . . END=3848766 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3848767 . T . . END=3848767 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3848768 . T . . END=3848791 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3848792 . T . . END=3852358 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3852359 . C . . END=3853607 GT:DP:GQ:MIN_DP:PL 0:2:20:1:0,20 +chrX 3853608 . A . . END=3853610 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3853611 . C . . END=3853613 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3853614 . A . . END=3853614 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3853615 . C . . END=3853616 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3853617 . C . . END=3853617 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3853618 . A . . END=3853621 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3853622 . G . . END=3853622 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3853623 . A . . END=3853628 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3853629 . T . . END=3853629 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3853630 . C . . END=3853653 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3853654 . G . . END=3853654 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3853655 . T . . END=3853793 GT:DP:GQ:MIN_DP:PL 0:2:20:1:0,20 +chrX 3853794 . A . . END=3854146 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3854147 . T . . END=3854213 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3854214 . G . . END=3854214 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3854215 . C . . END=3854216 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3854217 . A . . END=3854218 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3854219 . A . . END=3854285 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3854286 . A . . END=3854328 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3854329 . C . . END=3855554 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3855555 . G . . END=3856577 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3856578 . A . . END=3856601 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3856602 . C . . END=3856602 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3856603 . T . . END=3856832 GT:DP:GQ:MIN_DP:PL 0:2:20:1:0,20 +chrX 3856833 . T . . END=3856833 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3856834 . A . . END=3857698 GT:DP:GQ:MIN_DP:PL 0:2:35:1:0,35 +chrX 3857699 . A . . END=3857699 GT:DP:GQ:MIN_DP:PL 0:2:10:2:0,10 +chrX 3857700 . T . . END=3857702 GT:DP:GQ:MIN_DP:PL 0:2:35:1:0,35 +chrX 3857703 . C . . END=3857703 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3857704 . A . . END=3857709 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3857710 . T . . END=3857710 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3857711 . C . . END=3857711 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3857712 . T . . END=3857714 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3857715 . A . . END=3857715 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3857716 . T . . END=3857717 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3857718 . G . . END=3857718 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3857719 . C . . END=3857720 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3857721 . T . . END=3857730 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3857731 . C . . END=3857731 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3857732 . A . . END=3857740 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3857741 . G . . END=3857741 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3857742 . T . . END=3857750 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3857751 . C . . END=3857752 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3857753 . C . . END=3857755 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3857756 . T . . END=3857756 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3857757 . G . . END=3857766 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3857767 . A . . END=3859685 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3859686 . C . . END=3860156 GT:DP:GQ:MIN_DP:PL 0:6:35:1:0,35 +chrX 3860157 . C . . END=3860161 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 3860162 . C . . END=3861008 GT:DP:GQ:MIN_DP:PL 0:2:35:1:0,35 +chrX 3861009 . A . . END=3861011 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3861012 . C . . END=3861215 GT:DP:GQ:MIN_DP:PL 0:2:20:1:0,20 +chrX 3861216 . T . . END=3861216 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3861217 . G . . END=3861217 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3861218 . C . . END=3861219 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3861220 . A . . END=3861224 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3861225 . G . . END=3861226 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3861227 . G . . END=3861230 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3861231 . G . . END=3861231 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3861232 . C . . END=3861235 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3861236 . T . . END=3861236 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3861237 . G . . END=3861277 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3861278 . T . . END=3861656 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3861657 . T . . END=3861764 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3861765 . T . . END=3861765 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3861766 . T . . END=3861776 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3861777 . G . . END=3861777 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3861778 . A . . END=3862119 GT:DP:GQ:MIN_DP:PL 0:2:35:1:0,35 +chrX 3862120 . C . . END=3862123 GT:DP:GQ:MIN_DP:PL 0:12:0:12:0,0 +chrX 3862124 . A . . END=3862820 GT:DP:GQ:MIN_DP:PL 0:2:20:1:0,20 +chrX 3862821 . A . . END=3862821 GT:DP:GQ:MIN_DP:PL 0:2:10:2:0,10 +chrX 3862822 . T . . END=3863001 GT:DP:GQ:MIN_DP:PL 0:2:20:1:0,20 +chrX 3863002 . T . . END=3863403 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3863404 . C . . END=3864605 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3864606 . A . . END=3864606 GT:DP:GQ:MIN_DP:PL 0:2:10:2:0,10 +chrX 3864607 . A . . END=3864617 GT:DP:GQ:MIN_DP:PL 0:2:70:2:0,70 +chrX 3864618 . T . . END=3864643 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3864644 . G . . END=3864788 GT:DP:GQ:MIN_DP:PL 0:2:35:1:0,35 +chrX 3864789 . T . . END=3866106 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3866107 . C . . END=3866163 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3866164 . G . . END=3866166 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3866167 . T . . END=3866175 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3866176 . C . . END=3866176 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3866177 . C . . END=3866193 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3866194 . T . . END=3866194 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3866195 . T . . END=3868255 GT:DP:GQ:MIN_DP:PL 0:2:35:1:0,35 +chrX 3868256 . G . . END=3868256 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3868257 . A . . END=3868262 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3868263 . C . . END=3868264 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3868265 . T . . END=3868265 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3868266 . C . . END=3868307 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3868308 . T . . END=3868315 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3868316 . C . . END=3868316 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3868317 . A . . END=3868348 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3868349 . G . . END=3868349 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3868350 . G . . END=3868354 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3868355 . C . . END=3868355 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3868356 . C . . END=3868382 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3868383 . C . . END=3868383 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 3868384 . C . . END=3869601 GT:DP:GQ:MIN_DP:PL 0:2:20:1:0,20 +chrX 3869602 . G . . END=3869603 GT:DP:GQ:MIN_DP:PL 0:2:10:2:0,10 +chrX 3869604 . T . . END=3869606 GT:DP:GQ:MIN_DP:PL 0:2:35:1:0,35 +chrX 3869607 . A . . END=3869607 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 3869608 . T . . END=3869623 GT:DP:GQ:MIN_DP:PL 0:2:25:1:0,25 +chrX 3869624 . A . . END=3869625 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 3869626 . T . . END=3869630 GT:DP:GQ:MIN_DP:PL 0:2:20:2:0,20 +chrX 3869631 . C . . END=3869631 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 3869632 . C . . END=3869632 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3869633 . A . . END=3869633 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 3869634 . G . . END=3869637 GT:DP:GQ:MIN_DP:PL 0:2:35:1:0,35 +chrX 3869638 . C . . END=3869638 GT:DP:GQ:MIN_DP:PL 0:2:10:2:0,10 +chrX 3869639 . A . . END=3869664 GT:DP:GQ:MIN_DP:PL 0:2:24:1:0,24 +chrX 3869665 . C . . END=3869665 GT:DP:GQ:MIN_DP:PL 0:4:0:4:0,0 +chrX 3869666 . T . . END=3869811 GT:DP:GQ:MIN_DP:PL 0:2:35:1:0,35 +chrX 3869812 . C . . END=3871585 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3871586 . C . . END=3871609 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3871610 . T . . END=3871610 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3871611 . T . . END=3871691 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3871692 . G . . END=3871692 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3871693 . T . . END=3871697 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3871698 . C . . END=3871698 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3871699 . T . . END=3871700 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3871701 . C . . END=3871702 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3871703 . A . . END=3871704 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3871705 . G . . END=3871705 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3871706 . C . . END=3871712 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3871713 . C . . END=3871713 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3871714 . C . . END=3871715 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3871716 . C . . END=3871735 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3871736 . C . . END=3873140 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3873141 . G . . END=3873142 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3873143 . G . . END=3873145 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3873146 . G . . END=3873149 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3873150 . C . . END=3873150 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3873151 . C . . END=3873152 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3873153 . T . . END=3873153 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3873154 . G . . END=3873155 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3873156 . A . . END=3873160 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3873161 . C . . END=3873161 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3873162 . A . . END=3873162 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3873163 . A . . END=3873164 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3873165 . G . . END=3873173 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3873174 . C . . END=3873174 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3873175 . A . . END=3873175 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3873176 . C . . END=3873176 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3873177 . C . . END=3873221 GT:DP:GQ:MIN_DP:PL 0:2:20:1:0,20 +chrX 3873222 . G . . END=3873222 GT:DP:GQ:MIN_DP:PL 0:2:10:2:0,10 +chrX 3873223 . A . . END=3873223 GT:DP:GQ:MIN_DP:PL 0:2:20:2:0,20 +chrX 3873224 . G . . END=3873224 GT:DP:GQ:MIN_DP:PL 0:2:10:2:0,10 +chrX 3873225 . A . . END=3873225 GT:DP:GQ:MIN_DP:PL 0:2:59:2:0,59 +chrX 3873226 . G . . END=3873226 GT:DP:GQ:MIN_DP:PL 0:2:10:2:0,10 +chrX 3873227 . A . . END=3873235 GT:DP:GQ:MIN_DP:PL 0:2:35:1:0,35 +chrX 3873236 . G . . END=3873236 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 3873237 . A . . END=3873318 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3873319 . G . . END=3874385 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3874386 . C . . END=3874401 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3874402 . T . . END=3874402 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3874403 . C . . END=3874448 GT:DP:GQ:MIN_DP:PL 0:2:25:1:0,25 +chrX 3874449 . T . . END=3874449 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 3874450 . T . . END=3874471 GT:DP:GQ:MIN_DP:PL 0:2:25:1:0,25 +chrX 3874472 . A . . END=3874472 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3874473 . A . . END=3874473 GT:DP:GQ:MIN_DP:PL 0:2:49:2:0,49 +chrX 3874474 . A . . END=3874475 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3874476 . T . . END=3874571 GT:DP:GQ:MIN_DP:PL 0:1:20:1:0,20 +chrX 3874572 . A . . END=3874572 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3874573 . G . . END=3874575 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3874576 . A . . END=3874576 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3874577 . G . . END=3874600 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3874601 . G . . END=3874601 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3874602 . C . . END=3874631 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3874632 . T . . END=3874708 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3874709 . A . . END=3875031 GT:DP:GQ:MIN_DP:PL 0:3:35:1:0,35 +chrX 3875032 . T . . END=3875042 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3875043 . G . . END=3875051 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3875052 . C . . END=3875053 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 3875054 . A . . END=3875830 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3875831 . G . . END=3875831 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 3875832 . C . . END=3875835 GT:DP:GQ:MIN_DP:PL 0:2:35:1:0,35 +chrX 3875836 . C . . END=3875836 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3875837 . A . . END=3875837 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3875838 . G . . END=3875838 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3875839 . C . . END=3875839 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3875840 . C . . END=3875840 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3875841 . G . . END=3875842 GT:DP:GQ:MIN_DP:PL 0:2:49:2:0,49 +chrX 3875843 . C . . END=3875843 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3875844 . G . . END=3875853 GT:DP:GQ:MIN_DP:PL 0:2:25:1:0,25 +chrX 3875854 . A . . END=3875854 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 3875855 . A . . END=3875861 GT:DP:GQ:MIN_DP:PL 0:2:49:2:0,49 +chrX 3875862 . C . . END=3875862 GT:DP:GQ:MIN_DP:PL 0:2:10:2:0,10 +chrX 3875863 . T . . END=3875867 GT:DP:GQ:MIN_DP:PL 0:2:35:1:0,35 +chrX 3875868 . C . . END=3875868 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3875869 . C . . END=3875874 GT:DP:GQ:MIN_DP:PL 0:2:25:1:0,25 +chrX 3875875 . A . . END=3875875 GT:DP:GQ:MIN_DP:PL 0:2:10:2:0,10 +chrX 3875876 . C . . END=3875894 GT:DP:GQ:MIN_DP:PL 0:2:20:1:0,20 +chrX 3875895 . A . . END=3876165 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3876166 . G . . END=3876568 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3876569 . G . . END=3876569 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3876570 . G . . END=3876571 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3876572 . G . . END=3876770 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3876771 . G . . END=3876772 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3876773 . G . . END=3876773 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3876774 . G . . END=3876800 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3876801 . T . . END=3876801 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3876802 . G . . END=3876816 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3876817 . C . . END=3877506 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3877507 . G . . END=3877598 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3877599 . G . . END=3877599 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3877600 . A . . END=3877609 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3877610 . G . . END=3877610 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3877611 . G . . END=3878517 GT:DP:GQ:MIN_DP:PL 0:2:20:1:0,20 +chrX 3878518 . G A, 317.04 . AS_QUALapprox=|327|0;AS_VarDP=0|11|0;DP=15;QUALapprox=327;RAW_GT_COUNT=0,0,1;RAW_MQandDP=9375,15;VarDP=11 GT:AD:DP:GQ:PL:SB 1:0,11,0:11:99:327,0,327:0,0,0,11 +chrX 3878519 . T . . END=3878715 GT:DP:GQ:MIN_DP:PL 0:2:35:1:0,35 +chrX 3878716 . G . . END=3882039 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3882040 . G . . END=3882097 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3882098 . G . . END=3882098 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3882099 . C . . END=3882104 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3882105 . C . . END=3882105 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3882106 . G . . END=3882120 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3882121 . A . . END=3882122 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3882123 . C . . END=3882133 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3882134 . A . . END=3882134 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3882135 . T . . END=3882180 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3882181 . A . . END=3882181 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 3882182 . G . . END=3882247 GT:DP:GQ:MIN_DP:PL 0:2:35:1:0,35 +chrX 3882248 . C . . END=3882248 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3882249 . C . . END=3882250 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3882251 . G . . END=3882251 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3882252 . G . . END=3882253 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3882254 . C . . END=3882254 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3882255 . T . . END=3882267 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3882268 . C . . END=3882268 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3882269 . G . . END=3883224 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3883225 . G . . END=3883225 GT:DP:GQ:MIN_DP:PL 0:2:10:2:0,10 +chrX 3883226 . T . . END=3883255 GT:DP:GQ:MIN_DP:PL 0:2:35:1:0,35 +chrX 3883256 . G . . END=3883256 GT:DP:GQ:MIN_DP:PL 0:2:10:2:0,10 +chrX 3883257 . A . . END=3883290 GT:DP:GQ:MIN_DP:PL 0:2:20:1:0,20 +chrX 3883291 . C . . END=3883291 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3883292 . A . . END=3883296 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3883297 . G . . END=3883298 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3883299 . A . . END=3883299 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3883300 . T . . END=3883300 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3883301 . G . . END=3883304 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3883305 . G . . END=3883305 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3883306 . T . . END=3883306 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3883307 . T . . END=3883307 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3883308 . A . . END=3883308 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3883309 . G . . END=3883309 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3883310 . A . . END=3883311 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3883312 . A . . END=3883312 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3883313 . A . . END=3883315 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3883316 . T . . END=3883317 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3883318 . A . . END=3883318 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3883319 . T . . END=3884532 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3884533 . C . . END=3884683 GT:DP:GQ:MIN_DP:PL 0:2:25:1:0,25 +chrX 3884684 . C . . END=3884684 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3884685 . A . . END=3884716 GT:DP:GQ:MIN_DP:PL 0:2:20:1:0,20 +chrX 3884717 . C . . END=3884717 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3884718 . T . . END=3885327 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3885328 . G . . END=3886017 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3886018 . A . . END=3886034 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3886035 . C . . END=3886035 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3886036 . T . . END=3886052 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3886053 . C . . END=3886053 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3886054 . T . . END=3886055 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3886056 . G . . END=3886056 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3886057 . A . . END=3886061 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3886062 . A . . END=3886062 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3886063 . G . . END=3886090 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3886091 . C . . END=3886091 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3886092 . T . . END=3886126 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3886127 . C . . END=3886127 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3886128 . C . . END=3886129 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3886130 . C . . END=3886131 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3886132 . T . . END=3886136 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3886137 . A . . END=3886138 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3886139 . T . . END=3886140 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3886141 . G . . END=3886143 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3886144 . C . . END=3886145 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3886146 . A . . END=3886224 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3886225 . T . . END=3886354 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3886355 . A . . END=3886355 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3886356 . T . . END=3887321 GT:DP:GQ:MIN_DP:PL 0:2:25:1:0,25 +chrX 3887322 . A . . END=3892218 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3892219 . A . . END=3892228 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3892229 . C . . END=3892229 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3892230 . A . . END=3892241 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3892242 . A . . END=3892242 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3892243 . C . . END=3892243 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3892244 . A . . END=3892244 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3892245 . C . . END=3892251 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3892252 . A . . END=3892252 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3892253 . G . . END=3892268 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3892269 . A . . END=3892269 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3892270 . C . . END=3892287 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3892288 . A . . END=3892289 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3892290 . A . . END=3892290 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3892291 . A . . END=3892292 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3892293 . C . . END=3892304 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3892305 . A . . END=3892305 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3892306 . T . . END=3893210 GT:DP:GQ:MIN_DP:PL 0:2:35:1:0,35 +chrX 3893211 . G . . END=3893211 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 3893212 . A . . END=3893578 GT:DP:GQ:MIN_DP:PL 0:2:35:1:0,35 +chrX 3893579 . T . . END=3893579 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 3893580 . T . . END=3893611 GT:DP:GQ:MIN_DP:PL 0:2:20:1:0,20 +chrX 3893612 . T . . END=3893629 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3893630 . T . . END=3893770 GT:DP:GQ:MIN_DP:PL 0:2:59:2:0,59 +chrX 3893771 . T . . END=3898024 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3898025 . G . . END=3898153 GT:DP:GQ:MIN_DP:PL 0:2:35:1:0,35 +chrX 3898154 . G . . END=3898154 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3898155 . T . . END=3898292 GT:DP:GQ:MIN_DP:PL 0:2:35:1:0,35 +chrX 3898293 . A . . END=3898293 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3898294 . C . . END=3898415 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3898416 . C . . END=3900514 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3900515 . G . . END=3900545 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3900546 . C . . END=3900549 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3900550 . A . . END=3900619 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3900620 . G . . END=3900620 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3900621 . G . . END=3900653 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3900654 . G . . END=3900784 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3900785 . A . . END=3900787 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3900788 . G . . END=3900788 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3900789 . C . . END=3900793 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3900794 . T . . END=3900795 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3900796 . A . . END=3900804 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3900805 . G . . END=3900805 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3900806 . T . . END=3900820 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3900821 . A . . END=3900823 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3900824 . T . . END=3900830 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3900831 . G . . END=3900831 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3900832 . A . . END=3900833 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3900834 . A . . END=3900834 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3900835 . A . . END=3900854 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3900855 . T . . END=3900855 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3900856 . G . . END=3900865 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3900866 . T . . END=3900866 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3900867 . A . . END=3900871 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3900872 . A . . END=3900873 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3900874 . C . . END=3900881 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3900882 . A . . END=3900882 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3900883 . C . . END=3900918 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3900919 . T . . END=3902286 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3902287 . G . . END=3902293 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3902294 . C . . END=3902294 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3902295 . G . . END=3902304 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3902305 . C . . END=3902305 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3902306 . A . . END=3902311 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3902312 . C . . END=3902312 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3902313 . G . . END=3902317 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3902318 . G . . END=3902318 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3902319 . A . . END=3902325 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3902326 . G . . END=3902326 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3902327 . G . . END=3902329 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3902330 . G . . END=3902331 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3902332 . A . . END=3902333 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3902334 . G . . END=3902334 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3902335 . G . . END=3902337 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3902338 . C . . END=3902338 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3902339 . T . . END=3902353 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3902354 . C . . END=3902354 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3902355 . T . . END=3902370 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3902371 . G . . END=3902373 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3902374 . C . . END=3902378 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3902379 . A . . END=3902380 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3902381 . C . . END=3902388 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3902389 . C . . END=3902389 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3902390 . A . . END=3902424 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3902425 . G . . END=3902551 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3902552 . A . . END=3902692 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3902693 . G . . END=3905293 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3905294 . T . . END=3905319 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3905320 . G . . END=3905320 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3905321 . A . . END=3905350 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3905351 . G . . END=3905351 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3905352 . G . . END=3905355 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3905356 . C . . END=3905356 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3905357 . C . . END=3905361 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3905362 . G . . END=3905363 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3905364 . T . . END=3905380 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3905381 . A . . END=3905381 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3905382 . G . . END=3905382 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3905383 . G . . END=3905383 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3905384 . A . . END=3905387 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3905388 . G . . END=3905388 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3905389 . G . . END=3905392 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3905393 . C . . END=3905688 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3905689 . T . . END=3905732 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3905733 . G . . END=3905733 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3905734 . A . . END=3905734 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3905735 . A . . END=3905735 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3905736 . C . . END=3905827 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3905828 . A . . END=3907027 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3907028 . T . . END=3907151 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3907152 . T . . END=3907159 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3907160 . T . . END=3907238 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3907239 . A . . END=3907239 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3907240 . A . . END=3907299 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3907300 . C . . END=3907707 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3907708 . C . . END=3907726 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3907727 . T . . END=3907728 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3907729 . T . . END=3907735 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3907736 . T . . END=3907736 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3907737 . G . . END=3907749 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3907750 . T . . END=3907751 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3907752 . C . . END=3907755 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3907756 . T . . END=3907756 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3907757 . G . . END=3907762 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3907763 . T . . END=3907763 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3907764 . A . . END=3907767 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3907768 . A . . END=3907768 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3907769 . T . . END=3907773 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3907774 . A . . END=3907774 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3907775 . T . . END=3907776 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3907777 . G . . END=3907777 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3907778 . C . . END=3907778 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3907779 . A . . END=3907779 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3907780 . T . . END=3907780 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3907781 . A . . END=3907783 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3907784 . C . . END=3907786 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3907787 . A . . END=3907787 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3907788 . T . . END=3907795 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3907796 . A . . END=3907796 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3907797 . A . . END=3907798 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3907799 . A . . END=3907801 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3907802 . T . . END=3907805 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3907806 . G . . END=3907806 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3907807 . T . . END=3907808 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3907809 . C . . END=3907809 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3907810 . A . . END=3907810 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3907811 . G . . END=3907812 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3907813 . T . . END=3907814 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3907815 . T . . END=3907815 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3907816 . G . . END=3907816 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3907817 . A . . END=3907817 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3907818 . A . . END=3907819 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3907820 . T . . END=3907974 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3907975 . C . . END=3907984 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3907985 . A . . END=3907985 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3907986 . T . . END=3907995 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3907996 . C . . END=3907998 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3907999 . A . . END=3907999 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3908000 . C . . END=3908000 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3908001 . C . . END=3908013 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3908014 . G . . END=3908014 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3908015 . T . . END=3908015 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3908016 . C . . END=3908017 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3908018 . G . . END=3908021 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3908022 . T . . END=3908022 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3908023 . G . . END=3908023 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3908024 . A . . END=3908024 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3908025 . A . . END=3908025 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3908026 . T . . END=3908028 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3908029 . C . . END=3908041 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3908042 . T . . END=3908042 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3908043 . G . . END=3908083 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3908084 . T . . END=3912804 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3912805 . G . . END=3912838 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3912839 . C . . END=3912839 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3912840 . T . . END=3912876 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3912877 . A . . END=3912877 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3912878 . G . . END=3912886 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3912887 . A . . END=3912888 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3912889 . C . . END=3912892 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3912893 . G . . END=3912893 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3912894 . A . . END=3912898 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3912899 . A . . END=3912900 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3912901 . C . . END=3912903 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3912904 . A . . END=3912905 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3912906 . G . . END=3912911 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3912912 . A . . END=3912912 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3912913 . T . . END=3912927 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3912928 . C . . END=3912928 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3912929 . T . . END=3912933 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3912934 . A . . END=3913449 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3913450 . G . . END=3913455 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3913456 . G . . END=3913457 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3913458 . A . . END=3913458 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3913459 . A . . END=3913459 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3913460 . G . . END=3913461 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3913462 . C . . END=3913462 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3913463 . T . . END=3913486 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3913487 . T . . END=3913732 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3913733 . A . . END=3914061 GT:DP:GQ:MIN_DP:PL 0:4:35:1:0,35 +chrX 3914062 . C . . END=3914079 GT:DP:GQ:MIN_DP:PL 0:3:0:3:0,0 +chrX 3914080 . A . . END=3914161 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3914162 . C . . END=3914162 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3914163 . T . . END=3915117 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3915118 . C . . END=3915118 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3915119 . C . . END=3915134 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3915135 . C . . END=3915253 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3915254 . C . . END=3915266 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3915267 . A . . END=3915267 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3915268 . T . . END=3915282 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3915283 . T . . END=3915283 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3915284 . A . . END=3915288 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3915289 . C . . END=3915289 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3915290 . T . . END=3915290 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3915291 . G . . END=3915291 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3915292 . A . . END=3915295 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3915296 . A . . END=3915296 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3915297 . A . . END=3915299 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3915300 . G . . END=3915300 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3915301 . G . . END=3915309 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3915310 . C . . END=3915310 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3915311 . G . . END=3915312 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3915313 . C . . END=3915313 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3915314 . A . . END=3915335 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3915336 . A . . END=3915336 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3915337 . A . . END=3915338 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3915339 . G . . END=3915339 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3915340 . G . . END=3915394 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3915395 . G . . END=3915415 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3915416 . G . . END=3915417 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3915418 . C . . END=3915418 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3915419 . G . . END=3915432 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3915433 . G . . END=3915433 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3915434 . A . . END=3915434 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3915435 . G . . END=3915435 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3915436 . G . . END=3915438 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3915439 . C . . END=3915439 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3915440 . C . . END=3915440 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3915441 . A . . END=3915441 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3915442 . C . . END=3915443 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3915444 . G . . END=3915444 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3915445 . C . . END=3915449 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3915450 . G . . END=3915453 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3915454 . T . . END=3915456 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3915457 . C . . END=3915457 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3915458 . C . . END=3915461 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3915462 . T . . END=3915462 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3915463 . T . . END=3915470 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3915471 . C . . END=3915472 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3915473 . C . . END=3915530 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3915531 . C . . END=3924646 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3924647 . T . . END=3924726 GT:DP:GQ:MIN_DP:PL 0:2:20:1:0,20 +chrX 3924727 . T . . END=3924727 GT:DP:GQ:MIN_DP:PL 0:2:10:2:0,10 +chrX 3924728 . T . . END=3924755 GT:DP:GQ:MIN_DP:PL 0:2:20:1:0,20 +chrX 3924756 . G . . END=3924756 GT:DP:GQ:MIN_DP:PL 0:2:10:2:0,10 +chrX 3924757 . T . . END=3924775 GT:DP:GQ:MIN_DP:PL 0:2:20:1:0,20 +chrX 3924776 . G . . END=3924776 GT:DP:GQ:MIN_DP:PL 0:2:10:2:0,10 +chrX 3924777 . G . . END=3924786 GT:DP:GQ:MIN_DP:PL 0:2:29:1:0,29 +chrX 3924787 . A . . END=3924790 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 3924791 . T . . END=3924797 GT:DP:GQ:MIN_DP:PL 0:2:45:2:0,45 +chrX 3924798 . T . . END=3924798 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3924799 . T . . END=3924799 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3924800 . A . . END=3924800 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3924801 . T . . END=3925485 GT:DP:GQ:MIN_DP:PL 0:2:20:1:0,20 +chrX 3925486 . G . . END=3925488 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3925489 . G . . END=3925506 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3925507 . C . . END=3925507 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3925508 . A . . END=3925508 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3925509 . G . . END=3925509 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3925510 . T . . END=3925514 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3925515 . G . . END=3925515 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3925516 . T . . END=3925525 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3925526 . T . . END=3925526 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3925527 . G . . END=3925603 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3925604 . A . . END=3925667 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3925668 . T . . END=3925671 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3925672 . A . . END=3925674 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3925675 . T . . END=3925678 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3925679 . C . . END=3925679 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3925680 . T . . END=3925706 GT:DP:GQ:MIN_DP:PL 0:2:20:1:0,20 +chrX 3925707 . A . . END=3925707 GT:DP:GQ:MIN_DP:PL 0:2:10:2:0,10 +chrX 3925708 . C . . END=3925822 GT:DP:GQ:MIN_DP:PL 0:2:20:1:0,20 +chrX 3925823 . C . . END=3925887 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3925888 . T . . END=3928429 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3928430 . G . . END=3930239 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3930240 . T . . END=3930998 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3930999 . T . . END=3931164 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3931165 . A . . END=3931694 GT:DP:GQ:MIN_DP:PL 0:3:35:1:0,35 +chrX 3931695 . A . . END=3931716 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3931717 . T . . END=3931720 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3931721 . T . . END=3931721 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3931722 . G . . END=3931730 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3931731 . C . . END=3931732 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3931733 . G . . END=3931734 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3931735 . T . . END=3931736 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3931737 . G . . END=3931739 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3931740 . G . . END=3931742 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3931743 . A . . END=3931747 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3931748 . T . . END=3931748 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3931749 . G . . END=3931756 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3931757 . G . . END=3931758 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3931759 . T . . END=3931762 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3931763 . T . . END=3931763 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3931764 . T . . END=3931766 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3931767 . A . . END=3931767 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3931768 . G . . END=3931771 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3931772 . T . . END=3931773 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3931774 . A . . END=3931777 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3931778 . T . . END=3931783 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3931784 . T . . END=3931784 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3931785 . G . . END=3931785 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3931786 . A . . END=3932767 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3932768 . A . . END=3932768 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3932769 . A . . END=3932774 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3932775 . A . . END=3932783 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3932784 . T . . END=3934507 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3934508 . T . . END=3934575 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3934576 . C . . END=3934635 GT:DP:GQ:MIN_DP:PL 0:2:35:1:0,35 +chrX 3934636 . T . . END=3934636 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3934637 . T . . END=3935692 GT:DP:GQ:MIN_DP:PL 0:2:20:1:0,20 +chrX 3935693 . A . . END=3935752 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3935753 . G . . END=3935758 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3935759 . C . . END=3935761 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3935762 . A . . END=3935776 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3935777 . A . . END=3935778 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3935779 . A . . END=3935801 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3935802 . T . . END=3935802 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3935803 . T . . END=3935804 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3935805 . T . . END=3935805 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3935806 . T . . END=3935828 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3935829 . G . . END=3935830 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 3935831 . A . . END=3935850 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3935851 . A . . END=3935851 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3935852 . C . . END=3935888 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3935889 . G . . END=3936224 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3936225 . T . . END=3939075 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3939076 . T C, 1176.04 . AS_QUALapprox=|1186|0;AS_VarDP=0|37|0;DP=39;QUALapprox=1186;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140400,39;VarDP=37 GT:AD:DP:GQ:PL:SB 1:0,37,0:37:99:1186,0,1186:0,0,16,21 +chrX 3939077 . A . . END=3942658 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,481 +chrX 3942659 . CTTCT C, 430.01 . AS_QUALapprox=|440|0;AS_VarDP=0|12|0;DP=27;QUALapprox=440;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=12 GT:AD:DP:GQ:PL:SB 1:0,12,0:12:99:440,0,440:0,0,3,9 +chrX 3942664 . T . . END=3967139 GT:DP:GQ:MIN_DP:PL 0:31:90:31:0,90 +chrX 3967140 . G A, 753.04 . AS_QUALapprox=|763|0;AS_VarDP=0|25|0;DP=25;QUALapprox=763;RAW_GT_COUNT=0,0,1;RAW_MQandDP=51848,25;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:763,0,763:0,0,17,8 +chrX 3967141 . C . . END=3967747 GT:DP:GQ:MIN_DP:PL 0:3:35:1:0,35 +chrX 3967748 . C . . END=3967748 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3967749 . C . . END=3967766 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3967767 . G . . END=3967767 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3967768 . G . . END=3967771 GT:DP:GQ:MIN_DP:PL 0:1:25:1:0,25 +chrX 3967772 . T . . END=3967772 GT:DP:GQ:MIN_DP:PL 0:1:14:1:0,14 +chrX 3967773 . G . . END=3967780 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 3967781 . T . . END=3967869 GT:DP:GQ:MIN_DP:PL 0:0:0:0:0,0 +chrX 3967870 . T . . END=3995365 GT:DP:GQ:MIN_DP:PL 0:16:35:1:0,35 +chrX 3995366 . C . . END=3995366 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 3995367 . T . . END=3996012 GT:DP:GQ:MIN_DP:PL 0:11:70:11:0,70 +chrX 3996013 . T TA, 80.01 . AS_QUALapprox=|90|0;AS_VarDP=3|5|0;BaseQRankSum=0.000;DP=11;MQRankSum=-0.390;QUALapprox=90;RAW_GT_COUNT=0,0,1;RAW_MQandDP=12478,11;ReadPosRankSum=2.369;VarDP=8 GT:AD:DP:GQ:PL:SB 1:3,5,0:8:90:90,0,225:3,0,2,3 +chrX 3996014 . A . . END=3996014 GT:DP:GQ:MIN_DP:PL 0:8:99:8:0,278 +chrX 3996015 . T TATAA, 80.01 . AS_QUALapprox=|90|0;AS_VarDP=3|5|0;BaseQRankSum=0.000;DP=9;MQRankSum=-0.390;QUALapprox=90;RAW_GT_COUNT=0,0,1;RAW_MQandDP=9593,9;ReadPosRankSum=1.930;VarDP=8 GT:AD:DP:GQ:PL:SB 1:3,5,0:8:90:90,0,225:3,0,2,3 +chrX 3996016 . A . . END=3996086 GT:DP:GQ:MIN_DP:PL 0:7:99:7:0,104 +chrX 3996087 . ATATAATATATATTCTATATTATATTATAATATAATATATATTCTATATTATAT A, 115.01 . AS_QUALapprox=|125|0;AS_VarDP=3|4|0;DP=13;MQRankSum=1.902;QUALapprox=125;RAW_GT_COUNT=0,0,1;RAW_MQandDP=27296,13;VarDP=7 GT:AD:DP:GQ:PL:SB 1:3,4,0:7:99:125,0,153:2,1,3,1 +chrX 3996141 . T . . END=3996291 GT:DP:GQ:MIN_DP:PL 0:19:99:19:0,327 +chrX 3996292 . C CCTATATTCTATATAATATATAATATATT, 739.01 . AS_QUALapprox=|749|0;AS_VarDP=0|17|0;DP=28;QUALapprox=749;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97702,28;VarDP=17 GT:AD:DP:GQ:PL:SB 1:0,17,0:17:99:749,0,754:0,0,12,5 +chrX 3996293 . C . . END=3996327 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,238 +chrX 3996328 . C . . END=3996328 GT:DP:GQ:MIN_DP:PL 0:35:0:35:0,0 +chrX 3996329 . T . . END=4014814 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,129 +chrX 4014815 . GT G, 452.01 . AS_QUALapprox=|462|0;AS_VarDP=3|20|0;BaseQRankSum=-0.467;DP=35;MQRankSum=2.711;QUALapprox=462;RAW_GT_COUNT=0,0,1;RAW_MQandDP=124000,35;ReadPosRankSum=-0.868;VarDP=23 GT:AD:DP:GQ:PL:SB 1:3,20,0:23:99:462,0,506:3,0,16,4 +chrX 4014817 . T . . END=4031728 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,403 +chrX 4031729 . CTCTATCTATCTA C, 487.01 . AS_QUALapprox=|497|0;AS_VarDP=0|11|0;DP=19;QUALapprox=497;RAW_GT_COUNT=0,0,1;RAW_MQandDP=68400,19;VarDP=11 GT:AD:DP:GQ:PL:SB 1:0,11,0:11:99:497,0,497:0,0,5,6 +chrX 4031742 . T . . END=4040276 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,360 +chrX 4040277 . C CAT, 940.01 . AS_QUALapprox=|950|0;AS_VarDP=1|27|0;BaseQRankSum=-0.665;DP=32;MQRankSum=0.000;QUALapprox=950;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;ReadPosRankSum=1.733;VarDP=28 GT:AD:DP:GQ:PL:SB 1:1,27,0:28:99:950,0,988:0,1,18,9 +chrX 4040278 . A . . END=4041189 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,640 +chrX 4041190 . G C, 957.04 . AS_QUALapprox=|967|0;AS_VarDP=0|31|0;DP=34;QUALapprox=967;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:967,0,967:0,0,11,20 +chrX 4041191 . C . . END=4055948 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,522 +chrX 4055949 . CCACA C, 596.01 . AS_QUALapprox=|606|0;AS_VarDP=0|14|0;DP=26;QUALapprox=606;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=14 GT:AD:DP:GQ:PL:SB 1:0,14,0:14:99:606,0,606:0,0,6,8 +chrX 4055954 . C . . END=4067335 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,360 +chrX 4067336 . TTTTCTTTCTTTC T, 681.01 . AS_QUALapprox=|691|0;AS_VarDP=0|16|0;DP=18;QUALapprox=691;RAW_GT_COUNT=0,0,1;RAW_MQandDP=64800,18;VarDP=16 GT:AD:DP:GQ:PL:SB 1:0,16,0:16:99:691,0,691:0,0,2,14 +chrX 4067349 . T . . END=4070603 GT:DP:GQ:MIN_DP:PL 0:33:59:33:0,59 +chrX 4070604 . A G, 759.04 . AS_QUALapprox=|769|0;AS_VarDP=0|24|0;DP=26;QUALapprox=769;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:769,0,769:0,0,11,13 +chrX 4070605 . T . . END=4086484 GT:DP:GQ:MIN_DP:PL 0:28:59:28:0,59 +chrX 4086485 . C T, 1484.04 . AS_QUALapprox=|1494|0;AS_VarDP=0|45|0;DP=45;QUALapprox=1494;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162000,45;VarDP=45 GT:AD:DP:GQ:PL:SB 1:0,45,0:45:99:1494,0,1494:0,0,25,20 +chrX 4086486 . G . . END=4094420 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,264 +chrX 4094421 . GA G, 180.01 . AS_QUALapprox=|190|0;AS_VarDP=2|10|0;BaseQRankSum=-0.874;DP=20;MQRankSum=0.000;QUALapprox=190;RAW_GT_COUNT=0,0,1;RAW_MQandDP=72000,20;ReadPosRankSum=-0.158;VarDP=12 GT:AD:DP:GQ:PL:SB 1:2,10,0:12:99:190,0,216:0,2,6,4 +chrX 4094423 . A . . END=4096912 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,233 +chrX 4096913 . CA C, 66.01 . AS_QUALapprox=|76|0;AS_VarDP=3|6|0;BaseQRankSum=-0.319;DP=15;MQRankSum=0.000;QUALapprox=76;RAW_GT_COUNT=0,0,1;RAW_MQandDP=54000,15;ReadPosRankSum=0.319;VarDP=9 GT:AD:DP:GQ:PL:SB 1:3,6,0:9:76:76,0,117:1,2,5,1 +chrX 4096915 . A . . END=4099279 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,392 +chrX 4099280 . G GTATC, 917.01 . AS_QUALapprox=|927|0;AS_VarDP=0|21|0;DP=29;QUALapprox=927;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:927,0,928:0,0,14,7 +chrX 4099281 . T . . END=4102688 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,401 +chrX 4102689 . G A, 409.04 . AS_QUALapprox=|419|0;AS_VarDP=0|13|0;DP=14;QUALapprox=419;RAW_GT_COUNT=0,0,1;RAW_MQandDP=50400,14;VarDP=13 GT:AD:DP:GQ:PL:SB 1:0,13,0:13:99:419,0,419:0,0,7,6 +chrX 4102690 . A . . END=4109641 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,313 +chrX 4109642 . CTGTGTGTGTG C, 1386.01 . AS_QUALapprox=|1396|0;AS_VarDP=0|31|0;DP=36;QUALapprox=1396;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129600,36;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1396,0,1396:0,0,17,14 +chrX 4109653 . T . . END=4117928 GT:DP:GQ:MIN_DP:PL 0:29:33:21:0,33 +chrX 4117929 . T TTTTATTTA, 1029.01 . AS_QUALapprox=|1039|0;AS_VarDP=0|24|0;DP=31;QUALapprox=1039;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:1039,0,1040:0,0,10,14 +chrX 4117930 . T . . END=4119196 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,139 +chrX 4119197 . TTTCC T, 33.01 . AS_QUALapprox=|43|0;AS_VarDP=0|0|0;DP=5;QUALapprox=43;RAW_GT_COUNT=0,0,1;RAW_MQandDP=11300,5;VarDP=1 GT:AD:DP:GQ:PL:SB 1:0,1,0:1:43:43,0,45:0,0,0,1 +chrX 4119202 . T . . END=4119768 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,282 +chrX 4119769 . G A, 714.04 . AS_QUALapprox=|724|0;AS_VarDP=0|24|0;DP=24;QUALapprox=724;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:724,0,724:0,0,14,10 +chrX 4119770 . T . . END=4120021 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,699 +chrX 4120022 . C CATCT, 911.01 . AS_QUALapprox=|921|0;AS_VarDP=1|23|0;BaseQRankSum=-0.158;DP=38;MQRankSum=0.000;QUALapprox=921;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136225,38;ReadPosRankSum=-0.434;VarDP=24 GT:AD:DP:GQ:PL:SB 1:1,23,0:24:99:921,0,954:1,0,16,7 +chrX 4120023 . A . . END=4120736 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,180 +chrX 4120737 . A ATTT,ATATTT, 175.01 . AS_QUALapprox=|47|185|0;AS_VarDP=0|0|2|0;DP=11;QUALapprox=185;RAW_GT_COUNT=0,0,1;RAW_MQandDP=28394,11;VarDP=2 GT:AD:DP:GQ:PL:SB 2:0,0,2,0:2:99:185,138,0,162:0,0,2,0 +chrX 4120738 . T . . END=4120756 GT:DP:GQ:MIN_DP:PL 0:16:99:16:0,174 +chrX 4120757 . C . . END=4120757 GT:DP:GQ:MIN_DP:PL 0:15:0:15:0,0 +chrX 4120758 . T . . END=4121349 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,184 +chrX 4121350 . A AT,ATT, 447.01 . AS_QUALapprox=|457|0|0;AS_VarDP=0|15|3|0;DP=29;QUALapprox=457;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100400,29;VarDP=18 GT:AD:DP:GQ:PL:SB 1:0,15,3,0:18:99:457,0,587,559:0,0,7,11 +chrX 4121351 . T . . END=4121693 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,441 +chrX 4121694 . TTTTC T, 902.01 . AS_QUALapprox=|912|0;AS_VarDP=0|21|0;DP=26;QUALapprox=912;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:912,0,912:0,0,6,15 +chrX 4121699 . T . . END=4121788 GT:DP:GQ:MIN_DP:PL 0:19:99:19:0,414 +chrX 4121789 . C CTTCT, 468.01 . AS_QUALapprox=|478|0;AS_VarDP=0|11|0;DP=20;QUALapprox=478;RAW_GT_COUNT=0,0,1;RAW_MQandDP=71649,20;VarDP=11 GT:AD:DP:GQ:PL:SB 1:0,11,0:11:99:478,0,479:0,0,6,5 +chrX 4121790 . T . . END=4121853 GT:DP:GQ:MIN_DP:PL 0:18:99:18:0,321 +chrX 4121854 . C CCCTT, 265.01 . AS_QUALapprox=|275|0;AS_VarDP=1|9|0;BaseQRankSum=0.126;DP=13;MQRankSum=-0.385;QUALapprox=275;RAW_GT_COUNT=0,0,1;RAW_MQandDP=42374,13;ReadPosRankSum=0.674;VarDP=10 GT:AD:DP:GQ:PL:SB 1:1,9,0:10:99:275,0,300:1,0,1,8 +chrX 4121855 . C . . END=4121899 GT:DP:GQ:MIN_DP:PL 0:20:99:20:0,180 +chrX 4121900 . C . . END=4121900 GT:DP:GQ:MIN_DP:PL 0:19:0:19:0,0 +chrX 4121901 . T . . END=4121902 GT:DP:GQ:MIN_DP:PL 0:21:90:21:0,90 +chrX 4121903 . T . . END=4121903 GT:DP:GQ:MIN_DP:PL 0:22:0:22:0,0 +chrX 4121904 . C . . END=4124650 GT:DP:GQ:MIN_DP:PL 0:30:90:30:0,90 +chrX 4124651 . T C, 1091.04 . AS_QUALapprox=|1101|0;AS_VarDP=0|32|0;DP=33;QUALapprox=1101;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1101,0,1101:0,0,17,15 +chrX 4124652 . G . . END=4126025 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,501 +chrX 4126026 . G A, 809.04 . AS_QUALapprox=|819|0;AS_VarDP=0|25|0;DP=27;QUALapprox=819;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:819,0,819:0,0,12,13 +chrX 4126027 . T . . END=4126777 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,586 +chrX 4126778 . A G, 1018.04 . AS_QUALapprox=|1028|0;AS_VarDP=0|31|0;DP=33;QUALapprox=1028;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1028,0,1028:0,0,17,14 +chrX 4126779 . C . . END=4127072 GT:DP:GQ:MIN_DP:PL 0:43:99:43:0,1092 +chrX 4127073 . T C, 1191.04 . AS_QUALapprox=|1201|0;AS_VarDP=0|37|0;DP=39;QUALapprox=1201;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140400,39;VarDP=37 GT:AD:DP:GQ:PL:SB 1:0,37,0:37:99:1201,0,1201:0,0,16,21 +chrX 4127074 . T . . END=4127322 GT:DP:GQ:MIN_DP:PL 0:42:99:42:0,919 +chrX 4127323 . T C, 990.04 . AS_QUALapprox=|1000|0;AS_VarDP=0|30|0;DP=31;QUALapprox=1000;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:1000,0,1000:0,0,12,18 +chrX 4127324 . T . . END=4127523 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,720 +chrX 4127524 . C T, 1300.04 . AS_QUALapprox=|1310|0;AS_VarDP=0|40|0;DP=42;QUALapprox=1310;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151200,42;VarDP=40 GT:AD:DP:GQ:PL:SB 1:0,40,0:40:99:1310,0,1310:0,0,23,17 +chrX 4127525 . A . . END=4127655 GT:DP:GQ:MIN_DP:PL 0:41:99:41:0,1156 +chrX 4127656 . T G, 1172.04 . AS_QUALapprox=|1182|0;AS_VarDP=2|36|0;BaseQRankSum=4.241;DP=39;MQRankSum=0.000;QUALapprox=1182;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140400,39;ReadPosRankSum=0.523;VarDP=38 GT:AD:DP:GQ:PL:SB 1:2,36,0:38:99:1182,0,1232:1,1,17,19 +chrX 4127657 . C . . END=4128089 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,625 +chrX 4128090 . T C, 972.04 . AS_QUALapprox=|982|0;AS_VarDP=0|31|0;DP=32;QUALapprox=982;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:982,0,982:0,0,14,17 +chrX 4128091 . T . . END=4128157 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,863 +chrX 4128158 . T C, 937.04 . AS_QUALapprox=|947|0;AS_VarDP=0|28|0;DP=28;QUALapprox=947;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100225,28;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:947,0,947:0,0,14,14 +chrX 4128159 . T . . END=4128534 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,758 +chrX 4128535 . C T, 1377.04 . AS_QUALapprox=|1387|0;AS_VarDP=0|33|0;DP=34;QUALapprox=1387;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1387,0,1387:0,0,19,14 +chrX 4128536 . G . . END=4128556 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,873 +chrX 4128557 . T C, 1372.04 . AS_QUALapprox=|1382|0;AS_VarDP=0|33|0;DP=33;QUALapprox=1382;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1382,0,1382:0,0,20,13 +chrX 4128558 . A . . END=4129077 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,769 +chrX 4129078 . C T, 1152.04 . AS_QUALapprox=|1162|0;AS_VarDP=0|34|0;DP=34;QUALapprox=1162;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1162,0,1162:0,0,14,20 +chrX 4129079 . G . . END=4129203 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,739 +chrX 4129204 . T C, 868.04 . AS_QUALapprox=|878|0;AS_VarDP=0|27|0;DP=27;QUALapprox=878;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:878,0,878:0,0,11,16 +chrX 4129205 . T . . END=4129251 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,759 +chrX 4129252 . A T, 799.04 . AS_QUALapprox=|809|0;AS_VarDP=0|24|0;DP=26;QUALapprox=809;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:809,0,809:0,0,16,8 +chrX 4129253 . C . . END=4129498 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,710 +chrX 4129499 . T A, 913.04 . AS_QUALapprox=|923|0;AS_VarDP=0|28|0;DP=29;QUALapprox=923;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:923,0,923:0,0,15,13 +chrX 4129500 . T . . END=4129710 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,790 +chrX 4129711 . C G, 844.04 . AS_QUALapprox=|854|0;AS_VarDP=0|26|0;DP=27;QUALapprox=854;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:854,0,854:0,0,11,15 +chrX 4129712 . A . . END=4129967 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,759 +chrX 4129968 . A G, 1052.04 . AS_QUALapprox=|1062|0;AS_VarDP=0|34|0;DP=35;QUALapprox=1062;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1062,0,1062:0,0,13,21 +chrX 4129969 . A . . END=4130015 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,694 +chrX 4130016 . A G, 739.04 . AS_QUALapprox=|749|0;AS_VarDP=0|23|0;DP=25;QUALapprox=749;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:749,0,749:0,0,10,13 +chrX 4130017 . G . . END=4130396 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,669 +chrX 4130397 . C G, 1149.04 . AS_QUALapprox=|1159|0;AS_VarDP=0|26|0;DP=26;QUALapprox=1159;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:1159,0,1159:0,0,20,6 +chrX 4130398 . A . . END=4130405 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,778 +chrX 4130406 . C T, 1174.04 . AS_QUALapprox=|1184|0;AS_VarDP=0|27|0;DP=27;QUALapprox=1184;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:1184,0,1184:0,0,20,7 +chrX 4130407 . G . . END=4130735 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,654 +chrX 4130736 . T A, 1057.04 . AS_QUALapprox=|1067|0;AS_VarDP=0|32|0;DP=33;QUALapprox=1067;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1067,0,1067:0,0,15,17 +chrX 4130737 . T . . END=4130812 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,853 +chrX 4130813 . G T, 898.04 . AS_QUALapprox=|908|0;AS_VarDP=0|28|0;DP=28;QUALapprox=908;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:908,0,908:0,0,16,12 +chrX 4130814 . G . . END=4131407 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,680 +chrX 4131408 . G A, 1077.04 . AS_QUALapprox=|1087|0;AS_VarDP=0|33|0;DP=33;QUALapprox=1087;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1087,0,1087:0,0,13,20 +chrX 4131409 . T . . END=4131544 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,710 +chrX 4131545 . A G, 680.04 . AS_QUALapprox=|690|0;AS_VarDP=0|21|0;DP=22;QUALapprox=690;RAW_GT_COUNT=0,0,1;RAW_MQandDP=79200,22;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:690,0,690:0,0,16,5 +chrX 4131546 . C . . END=4131840 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,655 +chrX 4131841 . C T, 958.04 . AS_QUALapprox=|968|0;AS_VarDP=0|29|0;DP=29;QUALapprox=968;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:968,0,968:0,0,17,12 +chrX 4131842 . C . . END=4131975 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,873 +chrX 4131976 . C G, 1088.04 . AS_QUALapprox=|1098|0;AS_VarDP=2|33|0;BaseQRankSum=3.915;DP=37;MQRankSum=0.000;QUALapprox=1098;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133200,37;ReadPosRankSum=-1.386;VarDP=35 GT:AD:DP:GQ:PL:SB 1:2,33,0:35:99:1098,0,1117:1,1,17,16 +chrX 4131977 . C . . END=4133016 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,665 +chrX 4133017 . A C, 964.04 . AS_QUALapprox=|974|0;AS_VarDP=0|23|0;DP=25;QUALapprox=974;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:974,0,1001:0,0,9,13 +chrX 4133018 . T . . END=4133018 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,849 +chrX 4133019 . A C, 964.04 . AS_QUALapprox=|974|0;AS_VarDP=0|23|0;DP=25;QUALapprox=974;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:974,0,1001:0,0,9,13 +chrX 4133020 . T . . END=4133657 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,719 +chrX 4133658 . C CT, 445.01 . AS_QUALapprox=|455|0;AS_VarDP=1|21|0;BaseQRankSum=-0.399;DP=25;MQRankSum=0.000;QUALapprox=455;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;ReadPosRankSum=-1.263;VarDP=22 GT:AD:DP:GQ:PL:SB 1:1,21,0:22:99:455,0,480:1,0,8,13 +chrX 4133659 . T . . END=4133698 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,669 +chrX 4133699 . G A, 719.04 . AS_QUALapprox=|729|0;AS_VarDP=0|23|0;DP=24;QUALapprox=729;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:729,0,729:0,0,12,11 +chrX 4133700 . A . . END=4134501 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,545 +chrX 4134502 . A G, 953.04 . AS_QUALapprox=|963|0;AS_VarDP=0|30|0;DP=31;QUALapprox=963;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:963,0,963:0,0,13,17 +chrX 4134503 . C . . END=4134684 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,581 +chrX 4134685 . C G, 848.04 . AS_QUALapprox=|858|0;AS_VarDP=0|27|0;DP=28;QUALapprox=858;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:858,0,858:0,0,11,16 +chrX 4134686 . T . . END=4135460 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,536 +chrX 4135461 . G A, 809.04 . AS_QUALapprox=|819|0;AS_VarDP=0|25|0;DP=26;QUALapprox=819;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:819,0,819:0,0,16,9 +chrX 4135462 . C . . END=4137222 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,610 +chrX 4137223 . G A, 907.04 . AS_QUALapprox=|917|0;AS_VarDP=0|27|0;DP=28;QUALapprox=917;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:917,0,917:0,0,14,13 +chrX 4137224 . A . . END=4137477 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,616 +chrX 4137478 . T G, 660.04 . AS_QUALapprox=|670|0;AS_VarDP=0|20|0;DP=21;QUALapprox=670;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75600,21;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:670,0,670:0,0,14,6 +chrX 4137479 . G . . END=4137928 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,594 +chrX 4137929 . TA T, 905.01 . AS_QUALapprox=|915|0;AS_VarDP=0|28|0;DP=30;QUALapprox=915;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:915,0,915:0,0,9,19 +chrX 4137931 . A . . END=4139059 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,616 +chrX 4139060 . A AT, 507.01 . AS_QUALapprox=|517|0;AS_VarDP=0|23|0;DP=30;QUALapprox=517;RAW_GT_COUNT=0,0,1;RAW_MQandDP=107306,30;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:517,0,517:0,0,14,9 +chrX 4139061 . T . . END=4140343 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,536 +chrX 4140344 . A C, 917.04 . AS_QUALapprox=|927|0;AS_VarDP=0|29|0;DP=29;QUALapprox=927;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:927,0,927:0,0,15,14 +chrX 4140345 . G . . END=4140379 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,764 +chrX 4140380 . T C, 774.04 . AS_QUALapprox=|784|0;AS_VarDP=0|24|0;DP=27;QUALapprox=784;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:784,0,784:0,0,13,11 +chrX 4140381 . A . . END=4141324 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,661 +chrX 4141325 . T C, 766.04 . AS_QUALapprox=|776|0;AS_VarDP=0|25|0;DP=26;QUALapprox=776;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:776,0,776:0,0,9,16 +chrX 4141326 . C . . END=4142005 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,620 +chrX 4142006 . C T, 1105.04 . AS_QUALapprox=|1115|0;AS_VarDP=0|35|0;DP=36;QUALapprox=1115;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129600,36;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,35,0:35:99:1115,0,1115:0,0,15,20 +chrX 4142007 . G . . END=4142560 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,655 +chrX 4142561 . C T, 1170.04 . AS_QUALapprox=|1180|0;AS_VarDP=0|34|0;DP=35;QUALapprox=1180;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1180,0,1180:0,0,22,12 +chrX 4142562 . A . . END=4146235 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,382 +chrX 4146236 . G C, 715.04 . AS_QUALapprox=|725|0;AS_VarDP=1|23|0;BaseQRankSum=-0.335;DP=26;MQRankSum=0.000;QUALapprox=725;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;ReadPosRankSum=-0.723;VarDP=24 GT:AD:DP:GQ:PL:SB 1:1,23,0:24:99:725,0,759:1,0,12,11 +chrX 4146237 . A . . END=4146908 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,491 +chrX 4146909 . C CT, 569.01 . AS_QUALapprox=|579|0;AS_VarDP=1|21|0;BaseQRankSum=-0.158;DP=25;MQRankSum=0.000;QUALapprox=579;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;ReadPosRankSum=1.183;VarDP=22 GT:AD:DP:GQ:PL:SB 1:1,21,0:22:99:579,0,609:1,0,11,10 +chrX 4146910 . T . . END=4147247 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,645 +chrX 4147248 . T C, 808.04 . AS_QUALapprox=|818|0;AS_VarDP=0|26|0;DP=27;QUALapprox=818;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:818,0,818:0,0,18,8 +chrX 4147249 . G . . END=4147550 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,739 +chrX 4147551 . A G, 894.04 . AS_QUALapprox=|904|0;AS_VarDP=0|26|0;DP=28;QUALapprox=904;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:904,0,904:0,0,14,12 +chrX 4147552 . G . . END=4148837 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,665 +chrX 4148838 . C T, 1097.04 . AS_QUALapprox=|1107|0;AS_VarDP=1|34|0;BaseQRankSum=-0.269;DP=37;MQRankSum=0.000;QUALapprox=1107;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133200,37;ReadPosRankSum=0.446;VarDP=35 GT:AD:DP:GQ:PL:SB 1:1,34,0:35:99:1107,0,1142:0,1,16,18 +chrX 4148839 . C . . END=4149086 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,668 +chrX 4149087 . TACACAC T, 755.01 . AS_QUALapprox=|765|0;AS_VarDP=0|17|0;DP=21;QUALapprox=765;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75600,21;VarDP=17 GT:AD:DP:GQ:PL:SB 1:0,17,0:17:99:765,0,765:0,0,8,9 +chrX 4149094 . A . . END=4149140 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,495 +chrX 4149141 . C G, 1284.04 . AS_QUALapprox=|1294|0;AS_VarDP=0|29|0;DP=29;QUALapprox=1294;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:1294,0,1294:0,0,13,16 +chrX 4149142 . A . . END=4149142 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,958 +chrX 4149143 . C G, 1284.04 . AS_QUALapprox=|1294|0;AS_VarDP=0|29|0;DP=29;QUALapprox=1294;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:1294,0,1294:0,0,13,16 +chrX 4149144 . A . . END=4149190 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,629 +chrX 4149191 . GCA G, 1345.01 . AS_QUALapprox=|1355|0;AS_VarDP=0|32|0;DP=33;QUALapprox=1355;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1355,0,1355:0,0,10,22 +chrX 4149194 . C . . END=4153084 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,540 +chrX 4153085 . C A, 717.04 . AS_QUALapprox=|727|0;AS_VarDP=0|21|0;DP=21;QUALapprox=727;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75600,21;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:727,0,727:0,0,12,9 +chrX 4153086 . A . . END=4154840 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,372 +chrX 4154841 . A T, 887.04 . AS_QUALapprox=|897|0;AS_VarDP=1|28|0;BaseQRankSum=-0.300;DP=31;MQRankSum=0.000;QUALapprox=897;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;ReadPosRankSum=-0.658;VarDP=29 GT:AD:DP:GQ:PL:SB 1:1,28,0:29:99:897,0,932:1,0,13,15 +chrX 4154842 . T . . END=4155275 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,497 +chrX 4155276 . C T, 1121.04 . AS_QUALapprox=|1131|0;AS_VarDP=0|35|0;DP=36;QUALapprox=1131;RAW_GT_COUNT=0,0,1;RAW_MQandDP=128087,36;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,35,0:35:99:1131,0,1131:0,0,20,15 +chrX 4155277 . C . . END=4155927 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,843 +chrX 4155928 . G T, 958.04 . AS_QUALapprox=|968|0;AS_VarDP=0|29|0;DP=30;QUALapprox=968;RAW_GT_COUNT=0,0,1;RAW_MQandDP=106632,30;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:968,0,968:0,0,14,15 +chrX 4155929 . A . . END=4161722 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,397 +chrX 4161723 . T TTCTC, 1363.01 . AS_QUALapprox=|1373|0;AS_VarDP=0|31|0;DP=33;QUALapprox=1373;RAW_GT_COUNT=0,0,1;RAW_MQandDP=107790,33;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1373,0,1373:0,0,11,20 +chrX 4161724 . T . . END=4161791 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,405 +chrX 4161792 . TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCCTTCCTTCC T, 571.04 . AS_QUALapprox=|975|0;AS_VarDP=1|23|0;BaseQRankSum=-0.126;DP=27;MQRankSum=0.674;QUALapprox=975;RAW_GT_COUNT=0,0,1;RAW_MQandDP=78597,27;ReadPosRankSum=-1.036;VarDP=24 GT:AD:DP:GQ:PL:SB 1:1,23,0:24:99:975,0,781:1,0,1,8 +chrX 4161833 . T . . END=4163768 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,496 +chrX 4163769 . A G, 1012.04 . AS_QUALapprox=|1022|0;AS_VarDP=0|32|0;DP=35;QUALapprox=1022;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1022,0,1022:0,0,15,17 +chrX 4163770 . T . . END=4164017 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,620 +chrX 4164018 . A C, 804.04 . AS_QUALapprox=|814|0;AS_VarDP=0|24|0;DP=27;QUALapprox=814;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:814,0,814:0,0,10,14 +chrX 4164019 . C . . END=4164792 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,676 +chrX 4164793 . C T, 1166.04 . AS_QUALapprox=|1176|0;AS_VarDP=0|36|0;DP=36;QUALapprox=1176;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129600,36;VarDP=36 GT:AD:DP:GQ:PL:SB 1:0,36,0:36:99:1176,0,1176:0,0,21,15 +chrX 4164794 . G . . END=4164934 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,719 +chrX 4164935 . A C, 902.04 . AS_QUALapprox=|912|0;AS_VarDP=0|28|0;DP=29;QUALapprox=912;RAW_GT_COUNT=0,0,1;RAW_MQandDP=103825,29;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:912,0,912:0,0,11,17 +chrX 4164936 . C . . END=4165059 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,684 +chrX 4165060 . CA C, 409.01 . AS_QUALapprox=|419|0;AS_VarDP=1|21|0;DP=31;QUALapprox=419;RAW_GT_COUNT=0,0,1;RAW_MQandDP=105025,31;VarDP=22 GT:AD:DP:GQ:PL:SB 1:1,21,0:22:99:419,0,582:0,0,11,9 +chrX 4165062 . A . . END=4165137 GT:DP:GQ:MIN_DP:PL 0:19:99:19:0,481 +chrX 4165138 . G C, 595.04 . AS_QUALapprox=|605|0;AS_VarDP=0|18|0;DP=18;QUALapprox=605;RAW_GT_COUNT=0,0,1;RAW_MQandDP=64800,18;VarDP=18 GT:AD:DP:GQ:PL:SB 1:0,18,0:18:99:605,0,605:0,0,10,8 +chrX 4165139 . T . . END=4165328 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,575 +chrX 4165329 . TTTA T, 1072.01 . AS_QUALapprox=|1082|0;AS_VarDP=0|25|0;DP=36;QUALapprox=1082;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126961,36;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:1082,0,1082:0,0,10,15 +chrX 4165333 . T . . END=4165505 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,686 +chrX 4165506 . C T, 878.04 . AS_QUALapprox=|888|0;AS_VarDP=0|27|0;DP=28;QUALapprox=888;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:888,0,888:0,0,12,15 +chrX 4165507 . T . . END=4165537 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,803 +chrX 4165538 . A T, 789.04 . AS_QUALapprox=|799|0;AS_VarDP=0|25|0;DP=28;QUALapprox=799;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:799,0,799:0,0,12,13 +chrX 4165539 . T . . END=4165570 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,694 +chrX 4165571 . GAA G, 684.01 . AS_QUALapprox=|694|0;AS_VarDP=0|20|0;DP=23;QUALapprox=694;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:694,0,694:0,0,11,9 +chrX 4165574 . A . . END=4166549 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,556 +chrX 4166550 . ATTT A, 1043.01 . AS_QUALapprox=|1053|0;AS_VarDP=0|24|0;DP=26;QUALapprox=1053;RAW_GT_COUNT=0,0,1;RAW_MQandDP=92450,26;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:1053,0,1053:0,0,12,12 +chrX 4166554 . T . . END=4166846 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,576 +chrX 4166847 . G A, 779.04 . AS_QUALapprox=|789|0;AS_VarDP=0|24|0;DP=24;QUALapprox=789;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:789,0,789:0,0,11,13 +chrX 4166848 . T . . END=4167625 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,584 +chrX 4167626 . A T, 700.04 . AS_QUALapprox=|710|0;AS_VarDP=0|22|0;DP=23;QUALapprox=710;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:710,0,710:0,0,9,13 +chrX 4167627 . C . . END=4167779 GT:DP:GQ:MIN_DP:PL 0:22:99:22:0,580 +chrX 4167780 . G A, 685.04 . AS_QUALapprox=|695|0;AS_VarDP=0|20|0;DP=21;QUALapprox=695;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75600,21;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:695,0,695:0,0,14,6 +chrX 4167781 . C . . END=4168172 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,651 +chrX 4168173 . G T, 919.04 . AS_QUALapprox=|929|0;AS_VarDP=1|27|0;BaseQRankSum=5.389;DP=30;MQRankSum=0.000;QUALapprox=929;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;ReadPosRankSum=0.000;VarDP=28 GT:AD:DP:GQ:PL:SB 1:1,27,0:28:99:929,0,939:1,0,11,16 +chrX 4168174 . T . . END=4168756 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,581 +chrX 4168757 . C T, 883.04 . AS_QUALapprox=|893|0;AS_VarDP=0|27|0;DP=28;QUALapprox=893;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:893,0,893:0,0,10,17 +chrX 4168758 . G . . END=4169345 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,649 +chrX 4169346 . C CA, 906.01 . AS_QUALapprox=|916|0;AS_VarDP=0|23|0;DP=23;QUALapprox=916;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:916,0,916:0,0,11,12 +chrX 4169347 . T . . END=4169890 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,706 +chrX 4169891 . T A, 1259.04 . AS_QUALapprox=|1269|0;AS_VarDP=0|38|0;DP=38;QUALapprox=1269;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;VarDP=38 GT:AD:DP:GQ:PL:SB 1:0,38,0:38:99:1269,0,1269:0,0,21,17 +chrX 4169892 . C . . END=4171210 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,639 +chrX 4171211 . C T, 1315.04 . AS_QUALapprox=|1325|0;AS_VarDP=0|40|0;DP=42;QUALapprox=1325;RAW_GT_COUNT=0,0,1;RAW_MQandDP=150625,42;VarDP=40 GT:AD:DP:GQ:PL:SB 1:0,40,0:40:99:1325,0,1325:0,0,20,20 +chrX 4171212 . T . . END=4172640 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,591 +chrX 4172641 . C A, 858.04 . AS_QUALapprox=|868|0;AS_VarDP=0|29|0;DP=30;QUALapprox=868;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:868,0,868:0,0,17,12 +chrX 4172642 . A . . END=4173130 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,680 +chrX 4173131 . G A, 1121.04 . AS_QUALapprox=|1131|0;AS_VarDP=0|35|0;DP=37;QUALapprox=1131;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133200,37;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,35,0:35:99:1131,0,1131:0,0,14,21 +chrX 4173132 . A . . END=4173518 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,600 +chrX 4173519 . T G, 639.04 . AS_QUALapprox=|649|0;AS_VarDP=0|22|0;DP=23;QUALapprox=649;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:649,0,649:0,0,13,9 +chrX 4173520 . C . . END=4173937 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,576 +chrX 4173938 . G A, 770.04 . AS_QUALapprox=|780|0;AS_VarDP=0|23|0;DP=23;QUALapprox=780;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:780,0,780:0,0,9,14 +chrX 4173939 . C . . END=4174028 GT:DP:GQ:MIN_DP:PL 0:20:99:20:0,472 +chrX 4174029 . CT C, 386.01 . AS_QUALapprox=|396|0;AS_VarDP=0|14|0;DP=18;QUALapprox=396;RAW_GT_COUNT=0,0,1;RAW_MQandDP=64800,18;VarDP=14 GT:AD:DP:GQ:PL:SB 1:0,14,0:14:99:396,0,396:0,0,8,6 +chrX 4174031 . T . . END=4174372 GT:DP:GQ:MIN_DP:PL 0:38:99:38:0,556 +chrX 4174373 . C T, 1378.04 . AS_QUALapprox=|1388|0;AS_VarDP=0|42|0;DP=42;QUALapprox=1388;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151200,42;VarDP=42 GT:AD:DP:GQ:PL:SB 1:0,42,0:42:99:1388,0,1388:0,0,21,21 +chrX 4174374 . A . . END=4174696 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,661 +chrX 4174697 . C T, 892.04 . AS_QUALapprox=|902|0;AS_VarDP=0|29|0;DP=30;QUALapprox=902;RAW_GT_COUNT=0,0,1;RAW_MQandDP=91657,30;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:902,0,902:0,0,17,12 +chrX 4174698 . G . . END=4174795 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,645 +chrX 4174796 . T A, 600.04 . AS_QUALapprox=|610|0;AS_VarDP=2|21|0;BaseQRankSum=2.823;DP=24;MQRankSum=2.760;QUALapprox=610;RAW_GT_COUNT=0,0,1;RAW_MQandDP=74087,24;ReadPosRankSum=-0.765;VarDP=23 GT:AD:DP:GQ:PL:SB 1:2,21,0:23:99:610,0,700:1,1,10,11 +chrX 4174797 . C . . END=4174864 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,605 +chrX 4174865 . C G, 833.04 . AS_QUALapprox=|843|0;AS_VarDP=0|25|0;DP=26;QUALapprox=843;RAW_GT_COUNT=0,0,1;RAW_MQandDP=92304,26;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:843,0,843:0,0,14,11 +chrX 4174866 . A . . END=4175624 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,530 +chrX 4175625 . G A, 813.04 . AS_QUALapprox=|823|0;AS_VarDP=0|25|0;DP=26;QUALapprox=823;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:823,0,823:0,0,10,15 +chrX 4175626 . A . . END=4176303 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,580 +chrX 4176304 . T C, 1175.04 . AS_QUALapprox=|1185|0;AS_VarDP=0|38|0;DP=38;QUALapprox=1185;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;VarDP=38 GT:AD:DP:GQ:PL:SB 1:0,38,0:38:99:1185,0,1185:0,0,19,19 +chrX 4176305 . G . . END=4176651 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,809 +chrX 4176652 . C T, 824.04 . AS_QUALapprox=|834|0;AS_VarDP=0|24|0;DP=25;QUALapprox=834;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:834,0,834:0,0,12,12 +chrX 4176653 . G . . END=4178741 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,586 +chrX 4178742 . A G, 1038.04 . AS_QUALapprox=|1048|0;AS_VarDP=0|31|0;DP=32;QUALapprox=1048;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1048,0,1048:0,0,23,8 +chrX 4178743 . G . . END=4179476 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,624 +chrX 4179477 . GT G, 274.01 . AS_QUALapprox=|284|0;AS_VarDP=0|11|0;DP=21;QUALapprox=284;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75600,21;VarDP=11 GT:AD:DP:GQ:PL:SB 1:0,11,0:11:99:284,0,284:0,0,8,3 +chrX 4179479 . T . . END=4180460 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,501 +chrX 4180461 . A G, 690.04 . AS_QUALapprox=|700|0;AS_VarDP=0|21|0;DP=22;QUALapprox=700;RAW_GT_COUNT=0,0,1;RAW_MQandDP=79200,22;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:700,0,700:0,0,6,15 +chrX 4180462 . C . . END=4181483 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,315 +chrX 4181484 . A T, 497.04 . AS_QUALapprox=|507|0;AS_VarDP=3|16|0;DP=21;MQRankSum=-0.524;QUALapprox=507;RAW_GT_COUNT=0,0,1;RAW_MQandDP=66934,21;VarDP=19 GT:AD:DP:GQ:PL:SB 1:3,16,0:19:99:507,0,564:0,3,9,7 +chrX 4181485 . CA C, 497.01 . AS_QUALapprox=|507|0;AS_VarDP=3|16|0;DP=26;MQRankSum=-0.524;QUALapprox=507;RAW_GT_COUNT=0,0,1;RAW_MQandDP=84934,26;VarDP=19 GT:AD:DP:GQ:PL:SB 1:3,16,0:19:99:507,0,564:0,3,9,7 +chrX 4181487 . A . . END=4181659 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,555 +chrX 4181660 . C T, 1072.04 . AS_QUALapprox=|1082|0;AS_VarDP=0|32|0;DP=34;QUALapprox=1082;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1082,0,1082:0,0,14,18 +chrX 4181661 . G . . END=4182527 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,481 +chrX 4182528 . TCTGA T, 1048.01 . AS_QUALapprox=|1058|0;AS_VarDP=0|24|0;DP=27;QUALapprox=1058;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:1058,0,1058:0,0,12,12 +chrX 4182533 . C . . END=4182776 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,495 +chrX 4182777 . GT G, 655.01 . AS_QUALapprox=|665|0;AS_VarDP=1|19|0;DP=20;MQRankSum=0.000;QUALapprox=665;RAW_GT_COUNT=0,0,1;RAW_MQandDP=70000,20;ReadPosRankSum=-1.389;VarDP=20 GT:AD:DP:GQ:PL:SB 1:1,19,0:20:99:665,0,682:0,1,10,9 +chrX 4182779 . T G, 655.04 . AS_QUALapprox=|665|0;AS_VarDP=1|19|0;BaseQRankSum=1.991;DP=20;MQRankSum=0.000;QUALapprox=665;RAW_GT_COUNT=0,0,1;RAW_MQandDP=70000,20;ReadPosRankSum=-1.389;VarDP=20 GT:AD:DP:GQ:PL:SB 1:1,19,0:20:99:665,0,682:0,1,10,9 +chrX 4182780 . T . . END=4186200 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,268 +chrX 4186201 . A G, 535.04 . AS_QUALapprox=|545|0;AS_VarDP=0|16|0;DP=16;QUALapprox=545;RAW_GT_COUNT=0,0,1;RAW_MQandDP=57600,16;VarDP=16 GT:AD:DP:GQ:PL:SB 1:0,16,0:16:99:545,0,545:0,0,6,10 +chrX 4186202 . T . . END=4187978 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,491 +chrX 4187979 . C T, 876.04 . AS_QUALapprox=|886|0;AS_VarDP=0|27|0;DP=29;QUALapprox=886;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:886,0,886:0,0,14,13 +chrX 4187980 . T . . END=4188196 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,342 +chrX 4188197 . C CTTT, 317.01 . AS_QUALapprox=|327|0;AS_VarDP=0|10|0;DP=14;QUALapprox=327;RAW_GT_COUNT=0,0,1;RAW_MQandDP=50400,14;VarDP=10 GT:AD:DP:GQ:PL:SB 1:0,10,0:10:99:327,0,327:0,0,4,6 +chrX 4188198 . T . . END=4188265 GT:DP:GQ:MIN_DP:PL 0:13:99:13:0,228 +chrX 4188266 . ACTCATTGAACATGCACGTG A, 530.01 . AS_QUALapprox=|540|0;AS_VarDP=1|13|0;BaseQRankSum=0.000;DP=15;MQRankSum=0.000;QUALapprox=540;RAW_GT_COUNT=0,0,1;RAW_MQandDP=54000,15;ReadPosRankSum=1.738;VarDP=14 GT:AD:DP:GQ:PL:SB 1:1,13,0:14:99:540,0,585:0,1,5,8 +chrX 4188286 . C . . END=4188811 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,452 +chrX 4188812 . G A, 818.04 . AS_QUALapprox=|828|0;AS_VarDP=0|25|0;DP=26;QUALapprox=828;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:828,0,828:0,0,11,14 +chrX 4188813 . T . . END=4188868 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,710 +chrX 4188869 . G A, 754.04 . AS_QUALapprox=|764|0;AS_VarDP=0|23|0;DP=23;QUALapprox=764;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:764,0,764:0,0,14,9 +chrX 4188870 . C . . END=4189449 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,577 +chrX 4189450 . T C, 819.04 . AS_QUALapprox=|829|0;AS_VarDP=0|25|0;DP=25;QUALapprox=829;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:829,0,829:0,0,15,10 +chrX 4189451 . C . . END=4191196 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,530 +chrX 4191197 . T C, 1385.04 . AS_QUALapprox=|1395|0;AS_VarDP=0|43|0;DP=43;QUALapprox=1395;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154800,43;VarDP=43 GT:AD:DP:GQ:PL:SB 1:0,43,0:43:99:1395,0,1395:0,0,22,21 +chrX 4191198 . G . . END=4191606 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,630 +chrX 4191607 . T C, 779.04 . AS_QUALapprox=|789|0;AS_VarDP=0|25|0;DP=26;QUALapprox=789;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:789,0,789:0,0,11,14 +chrX 4191608 . A . . END=4191805 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,610 +chrX 4191806 . G A, 863.04 . AS_QUALapprox=|873|0;AS_VarDP=0|21|0;DP=21;QUALapprox=873;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75600,21;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:873,0,873:0,0,10,11 +chrX 4191807 . C . . END=4191821 GT:DP:GQ:MIN_DP:PL 0:22:90:22:0,90 +chrX 4191822 . A . . END=4191826 GT:DP:GQ:MIN_DP:PL 0:24:0:24:0,0 +chrX 4191827 . T C, 964.04 . AS_QUALapprox=|974|0;AS_VarDP=1|24|0;DP=25;MQRankSum=0.000;QUALapprox=974;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=25 GT:AD:DP:GQ:PL:SB 1:1,24,0:25:99:974,0,977:0,1,12,12 +chrX 4191828 . A . . END=4191980 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,669 +chrX 4191981 . C T, 903.04 . AS_QUALapprox=|913|0;AS_VarDP=0|28|0;DP=29;QUALapprox=913;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:913,0,913:0,0,21,7 +chrX 4191982 . A . . END=4192145 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,779 +chrX 4192146 . T A, 888.04 . AS_QUALapprox=|898|0;AS_VarDP=0|28|0;DP=28;QUALapprox=898;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:898,0,898:0,0,10,18 +chrX 4192147 . C . . END=4192265 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,824 +chrX 4192266 . C T, 763.04 . AS_QUALapprox=|773|0;AS_VarDP=0|25|0;DP=26;QUALapprox=773;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:773,0,773:0,0,9,16 +chrX 4192267 . A . . END=4192629 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,561 +chrX 4192630 . G A, 957.04 . AS_QUALapprox=|967|0;AS_VarDP=0|31|0;DP=32;QUALapprox=967;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:967,0,967:0,0,16,15 +chrX 4192631 . C . . END=4193075 GT:DP:GQ:MIN_DP:PL 0:22:99:22:0,407 +chrX 4193076 . T C, 630.04 . AS_QUALapprox=|640|0;AS_VarDP=0|19|0;DP=19;QUALapprox=640;RAW_GT_COUNT=0,0,1;RAW_MQandDP=68400,19;VarDP=19 GT:AD:DP:GQ:PL:SB 1:0,19,0:19:99:640,0,640:0,0,12,7 +chrX 4193077 . A . . END=4193442 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,537 +chrX 4193443 . C T, 948.04 . AS_QUALapprox=|958|0;AS_VarDP=0|30|0;DP=30;QUALapprox=958;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:958,0,958:0,0,12,18 +chrX 4193444 . C . . END=4193691 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,710 +chrX 4193692 . G GGAT, 1460.01 . AS_QUALapprox=|1470|0;AS_VarDP=0|33|0;DP=35;QUALapprox=1470;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1470,0,1470:0,0,16,17 +chrX 4193693 . G . . END=4194181 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,724 +chrX 4194182 . A G, 932.04 . AS_QUALapprox=|942|0;AS_VarDP=0|30|0;DP=30;QUALapprox=942;RAW_GT_COUNT=0,0,1;RAW_MQandDP=107425,30;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:942,0,942:0,0,14,16 +chrX 4194183 . A . . END=4194285 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,630 +chrX 4194286 . A ATT, 601.01 . AS_QUALapprox=|611|0;AS_VarDP=0|18|0;DP=25;QUALapprox=611;RAW_GT_COUNT=0,0,1;RAW_MQandDP=89425,25;VarDP=18 GT:AD:DP:GQ:PL:SB 1:0,18,0:18:99:611,0,612:0,0,9,9 +chrX 4194287 . T . . END=4194428 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,754 +chrX 4194429 . C T, 1036.04 . AS_QUALapprox=|1046|0;AS_VarDP=0|32|0;DP=32;QUALapprox=1046;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1046,0,1046:0,0,14,18 +chrX 4194430 . A . . END=4194771 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,572 +chrX 4194772 . C T, 526.04 . AS_QUALapprox=|536|0;AS_VarDP=1|17|0;BaseQRankSum=-0.177;DP=19;MQRankSum=0.000;QUALapprox=536;RAW_GT_COUNT=0,0,1;RAW_MQandDP=68400,19;ReadPosRankSum=-0.773;VarDP=18 GT:AD:DP:GQ:PL:SB 1:1,17,0:18:99:536,0,571:0,1,9,8 +chrX 4194773 . A . . END=4196553 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,510 +chrX 4196554 . C A, 649.04 . AS_QUALapprox=|659|0;AS_VarDP=1|20|0;BaseQRankSum=0.000;DP=22;MQRankSum=0.000;QUALapprox=659;RAW_GT_COUNT=0,0,1;RAW_MQandDP=79200,22;ReadPosRankSum=-1.488;VarDP=21 GT:AD:DP:GQ:PL:SB 1:1,20,0:21:99:659,0,693:0,1,14,6 +chrX 4196555 . A . . END=4196849 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,635 +chrX 4196850 . T A, 1059.04 . AS_QUALapprox=|1069|0;AS_VarDP=0|31|0;DP=31;QUALapprox=1069;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1069,0,1069:0,0,17,14 +chrX 4196851 . A . . END=4197092 GT:DP:GQ:MIN_DP:PL 0:37:99:37:0,1042 +chrX 4197093 . A G, 1107.04 . AS_QUALapprox=|1117|0;AS_VarDP=0|34|0;DP=34;QUALapprox=1117;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1117,0,1117:0,0,11,23 +chrX 4197094 . T . . END=4197355 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,640 +chrX 4197356 . G C, 654.04 . AS_QUALapprox=|664|0;AS_VarDP=0|20|0;DP=21;QUALapprox=664;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75600,21;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:664,0,664:0,0,13,7 +chrX 4197357 . A . . END=4197410 GT:DP:GQ:MIN_DP:PL 0:20:99:20:0,616 +chrX 4197411 . C A, 706.04 . AS_QUALapprox=|716|0;AS_VarDP=1|21|0;BaseQRankSum=4.801;DP=22;MQRankSum=0.000;QUALapprox=716;RAW_GT_COUNT=0,0,1;RAW_MQandDP=79200,22;ReadPosRankSum=-0.236;VarDP=22 GT:AD:DP:GQ:PL:SB 1:1,21,0:22:99:716,0,725:1,0,14,7 +chrX 4197412 . A . . END=4197466 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,720 +chrX 4197467 . C A, 807.04 . AS_QUALapprox=|817|0;AS_VarDP=1|27|0;BaseQRankSum=-0.492;DP=28;MQRankSum=0.000;QUALapprox=817;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;ReadPosRankSum=-0.186;VarDP=28 GT:AD:DP:GQ:PL:SB 1:1,27,0:28:99:817,0,852:1,0,16,11 +chrX 4197468 . C . . END=4198420 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,591 +chrX 4198421 . C G, 1092.04 . AS_QUALapprox=|1102|0;AS_VarDP=0|25|0;DP=25;QUALapprox=1102;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:1102,0,1102:0,0,16,9 +chrX 4198422 . T . . END=4198422 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,809 +chrX 4198423 . G C, 1092.04 . AS_QUALapprox=|1102|0;AS_VarDP=0|25|0;DP=25;QUALapprox=1102;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:1102,0,1102:0,0,16,9 +chrX 4198424 . T . . END=4198434 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,739 +chrX 4198435 . C T, 808.04 . AS_QUALapprox=|818|0;AS_VarDP=0|26|0;DP=26;QUALapprox=818;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:818,0,818:0,0,16,10 +chrX 4198436 . T . . END=4198989 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,559 +chrX 4198990 . T C, 610.04 . AS_QUALapprox=|620|0;AS_VarDP=0|20|0;DP=20;QUALapprox=620;RAW_GT_COUNT=0,0,1;RAW_MQandDP=72000,20;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:620,0,620:0,0,6,14 +chrX 4198991 . A . . END=4199253 GT:DP:GQ:MIN_DP:PL 0:22:99:22:0,544 +chrX 4199254 . G C, 800.04 . AS_QUALapprox=|810|0;AS_VarDP=0|18|0;DP=18;QUALapprox=810;RAW_GT_COUNT=0,0,1;RAW_MQandDP=64800,18;VarDP=18 GT:AD:DP:GQ:PL:SB 1:0,18,0:18:99:810,0,810:0,0,13,5 +chrX 4199255 . T . . END=4199260 GT:DP:GQ:MIN_DP:PL 0:18:99:18:0,576 +chrX 4199261 . G C, 800.04 . AS_QUALapprox=|810|0;AS_VarDP=0|18|0;DP=18;QUALapprox=810;RAW_GT_COUNT=0,0,1;RAW_MQandDP=64800,18;VarDP=18 GT:AD:DP:GQ:PL:SB 1:0,18,0:18:99:810,0,810:0,0,13,5 +chrX 4199262 . T . . END=4199369 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,640 +chrX 4199370 . T A, 1000.04 . AS_QUALapprox=|1010|0;AS_VarDP=0|30|0;DP=31;QUALapprox=1010;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:1010,0,1010:0,0,15,15 +chrX 4199371 . G . . END=4199405 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,1013 +chrX 4199406 . C G, 1221.04 . AS_QUALapprox=|1231|0;AS_VarDP=0|38|0;DP=39;QUALapprox=1231;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140400,39;VarDP=38 GT:AD:DP:GQ:PL:SB 1:0,38,0:38:99:1231,0,1231:0,0,22,16 +chrX 4199407 . C . . END=4199449 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,1096 +chrX 4199450 . G C, 1179.04 . AS_QUALapprox=|1189|0;AS_VarDP=0|38|0;DP=39;QUALapprox=1189;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140400,39;VarDP=38 GT:AD:DP:GQ:PL:SB 1:0,38,0:38:99:1189,0,1189:0,0,21,17 +chrX 4199451 . G . . END=4199682 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,903 +chrX 4199683 . G A, 1195.04 . AS_QUALapprox=|1205|0;AS_VarDP=0|37|0;DP=38;QUALapprox=1205;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;VarDP=37 GT:AD:DP:GQ:PL:SB 1:0,37,0:37:99:1205,0,1205:0,0,17,20 +chrX 4199684 . A . . END=4200636 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,561 +chrX 4200637 . G T, 1008.04 . AS_QUALapprox=|1018|0;AS_VarDP=1|32|0;BaseQRankSum=-0.393;DP=35;MQRankSum=0.000;QUALapprox=1018;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;ReadPosRankSum=-0.158;VarDP=33 GT:AD:DP:GQ:PL:SB 1:1,32,0:33:99:1018,0,1052:1,0,16,16 +chrX 4200638 . A . . END=4200820 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,788 +chrX 4200821 . T G, 834.04 . AS_QUALapprox=|844|0;AS_VarDP=1|27|0;BaseQRankSum=-0.435;DP=29;MQRankSum=0.000;QUALapprox=844;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;ReadPosRankSum=1.053;VarDP=28 GT:AD:DP:GQ:PL:SB 1:1,27,0:28:99:844,0,878:0,1,11,16 +chrX 4200822 . A . . END=4201284 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,710 +chrX 4201285 . TA T, 1150.01 . AS_QUALapprox=|1160|0;AS_VarDP=0|31|0;DP=32;QUALapprox=1160;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1160,0,1160:0,0,17,14 +chrX 4201287 . A . . END=4201600 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,883 +chrX 4201601 . A G, 970.04 . AS_QUALapprox=|980|0;AS_VarDP=0|33|0;DP=33;QUALapprox=980;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:980,0,980:0,0,17,16 +chrX 4201602 . T . . END=4201799 GT:DP:GQ:MIN_DP:PL 0:37:99:37:0,873 +chrX 4201800 . A G, 943.04 . AS_QUALapprox=|953|0;AS_VarDP=0|28|0;DP=28;QUALapprox=953;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:953,0,953:0,0,14,14 +chrX 4201801 . T . . END=4201818 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,720 +chrX 4201819 . C T, 722.04 . AS_QUALapprox=|732|0;AS_VarDP=0|23|0;DP=24;QUALapprox=732;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:732,0,732:0,0,11,12 +chrX 4201820 . T . . END=4202647 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,645 +chrX 4202648 . G T, 813.04 . AS_QUALapprox=|823|0;AS_VarDP=0|24|0;DP=26;QUALapprox=823;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:823,0,823:0,0,17,7 +chrX 4202649 . T . . END=4203145 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,551 +chrX 4203146 . T C, 773.04 . AS_QUALapprox=|783|0;AS_VarDP=0|24|0;DP=26;QUALapprox=783;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:783,0,783:0,0,17,7 +chrX 4203147 . A . . END=4203267 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,823 +chrX 4203268 . A G, 1087.04 . AS_QUALapprox=|1097|0;AS_VarDP=0|33|0;DP=33;QUALapprox=1097;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1097,0,1097:0,0,19,14 +chrX 4203269 . G . . END=4203573 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,645 +chrX 4203574 . T C, 1362.04 . AS_QUALapprox=|1372|0;AS_VarDP=0|31|0;DP=32;QUALapprox=1372;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1372,0,1372:0,0,10,21 +chrX 4203575 . C . . END=4203583 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,924 +chrX 4203584 . T G, 1328.04 . AS_QUALapprox=|1338|0;AS_VarDP=0|30|0;DP=32;QUALapprox=1338;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:1338,0,1338:0,0,10,20 +chrX 4203585 . T . . END=4204670 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,606 +chrX 4204671 . GA G, 882.01 . AS_QUALapprox=|892|0;AS_VarDP=0|25|0;DP=26;QUALapprox=892;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:892,0,892:0,0,14,11 +chrX 4204673 . A . . END=4205315 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,485 +chrX 4205316 . A G, 697.04 . AS_QUALapprox=|707|0;AS_VarDP=0|21|0;DP=21;QUALapprox=707;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75600,21;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:707,0,707:0,0,11,10 +chrX 4205317 . G . . END=4205714 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,567 +chrX 4205715 . A ACTCT, 1271.01 . AS_QUALapprox=|1281|0;AS_VarDP=0|30|0;DP=35;QUALapprox=1281;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:1281,0,1282:0,0,18,12 +chrX 4205716 . C . . END=4205947 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,754 +chrX 4205948 . A G, 894.04 . AS_QUALapprox=|904|0;AS_VarDP=1|29|0;BaseQRankSum=1.805;DP=31;MQRankSum=0.000;QUALapprox=904;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;ReadPosRankSum=-0.116;VarDP=30 GT:AD:DP:GQ:PL:SB 1:1,29,0:30:99:904,0,929:0,1,13,16 +chrX 4205949 . G . . END=4207191 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,408 +chrX 4207192 . A T, 902.04 . AS_QUALapprox=|912|0;AS_VarDP=0|28|0;DP=29;QUALapprox=912;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:912,0,912:0,0,18,10 +chrX 4207193 . T . . END=4207315 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,695 +chrX 4207316 . T TA, 525.01 . AS_QUALapprox=|535|0;AS_VarDP=0|22|0;DP=28;QUALapprox=535;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:535,0,536:0,0,12,10 +chrX 4207317 . A . . END=4207475 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,719 +chrX 4207476 . G A, 680.04 . AS_QUALapprox=|690|0;AS_VarDP=0|21|0;DP=21;QUALapprox=690;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75600,21;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:690,0,690:0,0,11,10 +chrX 4207477 . G . . END=4208041 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,709 +chrX 4208042 . T C, 854.04 . AS_QUALapprox=|864|0;AS_VarDP=0|26|0;DP=27;QUALapprox=864;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:864,0,864:0,0,10,16 +chrX 4208043 . T . . END=4209526 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,620 +chrX 4209527 . C A, 1001.04 . AS_QUALapprox=|1011|0;AS_VarDP=0|30|0;DP=30;QUALapprox=1011;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:1011,0,1011:0,0,15,15 +chrX 4209528 . A . . END=4212255 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,546 +chrX 4212256 . G A, 1239.04 . AS_QUALapprox=|1249|0;AS_VarDP=0|38|0;DP=40;QUALapprox=1249;RAW_GT_COUNT=0,0,1;RAW_MQandDP=144000,40;VarDP=38 GT:AD:DP:GQ:PL:SB 1:0,38,0:38:99:1249,0,1249:0,0,19,19 +chrX 4212257 . C . . END=4213487 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,337 +chrX 4213488 . G A, 819.04 . AS_QUALapprox=|829|0;AS_VarDP=0|25|0;DP=26;QUALapprox=829;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93025,26;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:829,0,829:0,0,12,13 +chrX 4213489 . G . . END=4214879 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,422 +chrX 4214880 . A AT, 551.01 . AS_QUALapprox=|561|0;AS_VarDP=0|21|0;DP=23;QUALapprox=561;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:561,0,561:0,0,11,10 +chrX 4214881 . T . . END=4215201 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,694 +chrX 4215202 . A G, 1106.04 . AS_QUALapprox=|1116|0;AS_VarDP=0|26|0;DP=27;QUALapprox=1116;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:1116,0,1116:0,0,13,13 +chrX 4215203 . G . . END=4215218 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,690 +chrX 4215219 . C A, 1002.04 . AS_QUALapprox=|1012|0;AS_VarDP=0|23|0;DP=24;QUALapprox=1012;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:1012,0,1012:0,0,12,11 +chrX 4215220 . T . . END=4215433 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,710 +chrX 4215434 . C T, 854.04 . AS_QUALapprox=|864|0;AS_VarDP=0|26|0;DP=27;QUALapprox=864;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:864,0,864:0,0,11,15 +chrX 4215435 . G . . END=4215500 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,834 +chrX 4215501 . A G, 945.04 . AS_QUALapprox=|955|0;AS_VarDP=0|30|0;DP=30;QUALapprox=955;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:955,0,955:0,0,16,14 +chrX 4215502 . C . . END=4215798 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,685 +chrX 4215799 . C T, 715.04 . AS_QUALapprox=|725|0;AS_VarDP=0|22|0;DP=24;QUALapprox=725;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:725,0,725:0,0,12,10 +chrX 4215800 . C . . END=4215920 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,714 +chrX 4215921 . G T, 958.04 . AS_QUALapprox=|968|0;AS_VarDP=0|29|0;DP=30;QUALapprox=968;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:968,0,968:0,0,20,9 +chrX 4215922 . T . . END=4216647 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,719 +chrX 4216648 . C G, 903.04 . AS_QUALapprox=|913|0;AS_VarDP=0|28|0;DP=31;QUALapprox=913;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:913,0,913:0,0,16,12 +chrX 4216649 . A . . END=4216808 GT:DP:GQ:MIN_DP:PL 0:38:99:38:0,889 +chrX 4216809 . C A, 1197.04 . AS_QUALapprox=|1207|0;AS_VarDP=0|35|0;DP=39;QUALapprox=1207;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140400,39;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,35,0:35:99:1207,0,1207:0,0,21,14 +chrX 4216810 . T . . END=4216978 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,739 +chrX 4216979 . G A, 982.04 . AS_QUALapprox=|992|0;AS_VarDP=0|30|0;DP=30;QUALapprox=992;RAW_GT_COUNT=0,0,1;RAW_MQandDP=107316,30;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:992,0,992:0,0,10,20 +chrX 4216980 . G . . END=4217277 GT:DP:GQ:MIN_DP:PL 0:19:99:19:0,180 +chrX 4217278 . AAAAAATATAT A, 116.01 . AS_QUALapprox=|126|0;AS_VarDP=0|3|0;DP=14;QUALapprox=126;RAW_GT_COUNT=0,0,1;RAW_MQandDP=49716,14;VarDP=3 GT:AD:DP:GQ:PL:SB 1:0,3,0:3:99:126,0,126:0,0,2,1 +chrX 4217289 . A . . END=4217558 GT:DP:GQ:MIN_DP:PL 0:16:25:13:0,25 +chrX 4217559 . C G, 530.04 . AS_QUALapprox=|540|0;AS_VarDP=0|18|0;DP=19;QUALapprox=540;RAW_GT_COUNT=0,0,1;RAW_MQandDP=65033,19;VarDP=18 GT:AD:DP:GQ:PL:SB 1:0,18,0:18:99:540,0,540:0,0,11,7 +chrX 4217560 . T . . END=4217656 GT:DP:GQ:MIN_DP:PL 0:20:99:20:0,561 +chrX 4217657 . G A, 660.04 . AS_QUALapprox=|670|0;AS_VarDP=0|21|0;DP=21;QUALapprox=670;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75600,21;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:670,0,670:0,0,12,9 +chrX 4217658 . G . . END=4217932 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,606 +chrX 4217933 . A C, 889.04 . AS_QUALapprox=|899|0;AS_VarDP=0|27|0;DP=28;QUALapprox=899;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:899,0,899:0,0,14,13 +chrX 4217934 . T . . END=4218251 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,665 +chrX 4218252 . C T, 1106.04 . AS_QUALapprox=|1116|0;AS_VarDP=0|35|0;DP=36;QUALapprox=1116;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129600,36;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,35,0:35:99:1116,0,1116:0,0,19,16 +chrX 4218253 . C . . END=4218341 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,956 +chrX 4218342 . A G, 1558.04 . AS_QUALapprox=|1568|0;AS_VarDP=0|36|0;DP=37;QUALapprox=1568;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133200,37;VarDP=36 GT:AD:DP:GQ:PL:SB 1:0,36,0:36:99:1568,0,1568:0,0,18,18 +chrX 4218343 . C . . END=4218350 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,1116 +chrX 4218351 . C T, 1534.04 . AS_QUALapprox=|1544|0;AS_VarDP=0|35|0;DP=35;QUALapprox=1544;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,35,0:35:99:1544,0,1544:0,0,17,18 +chrX 4218352 . G . . END=4218761 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,669 +chrX 4218762 . TAAAA T, 1171.01 . AS_QUALapprox=|1181|0;AS_VarDP=0|28|0;DP=30;QUALapprox=1181;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:1181,0,1181:0,0,10,18 +chrX 4218767 . A . . END=4218774 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,884 +chrX 4218775 . A C, 1171.04 . AS_QUALapprox=|1181|0;AS_VarDP=0|28|0;DP=28;QUALapprox=1181;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:1181,0,1181:0,0,10,18 +chrX 4218776 . A . . END=4218921 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,833 +chrX 4218922 . T C, 893.04 . AS_QUALapprox=|903|0;AS_VarDP=0|29|0;DP=29;QUALapprox=903;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:903,0,903:0,0,14,15 +chrX 4218923 . G . . END=4219072 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,730 +chrX 4219073 . G A, 968.04 . AS_QUALapprox=|978|0;AS_VarDP=0|29|0;DP=29;QUALapprox=978;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:978,0,978:0,0,19,10 +chrX 4219074 . A . . END=4219747 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,606 +chrX 4219748 . A G, 819.04 . AS_QUALapprox=|829|0;AS_VarDP=0|25|0;DP=26;QUALapprox=829;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:829,0,829:0,0,15,10 +chrX 4219749 . T . . END=4219831 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,714 +chrX 4219832 . C A, 839.04 . AS_QUALapprox=|849|0;AS_VarDP=0|25|0;DP=27;QUALapprox=849;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:849,0,849:0,0,13,12 +chrX 4219833 . T . . END=4219921 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,788 +chrX 4219922 . G A, 823.04 . AS_QUALapprox=|833|0;AS_VarDP=0|26|0;DP=28;QUALapprox=833;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:833,0,833:0,0,13,13 +chrX 4219923 . G . . END=4220087 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,716 +chrX 4220088 . G A, 1106.04 . AS_QUALapprox=|1116|0;AS_VarDP=0|33|0;DP=37;QUALapprox=1116;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133200,37;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1116,0,1116:0,0,17,16 +chrX 4220089 . T . . END=4220159 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,874 +chrX 4220160 . CATT C, 1340.01 . AS_QUALapprox=|1350|0;AS_VarDP=0|30|0;DP=35;QUALapprox=1350;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:1350,0,1350:0,0,15,15 +chrX 4220164 . A . . END=4220452 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,405 +chrX 4220453 . T C, 483.04 . AS_QUALapprox=|493|0;AS_VarDP=0|18|0;DP=20;QUALapprox=493;RAW_GT_COUNT=0,0,1;RAW_MQandDP=70000,20;VarDP=18 GT:AD:DP:GQ:PL:SB 1:0,18,0:18:99:493,0,493:0,0,9,9 +chrX 4220454 . T . . END=4220669 GT:DP:GQ:MIN_DP:PL 0:15:99:15:0,383 +chrX 4220670 . G A, 828.04 . AS_QUALapprox=|838|0;AS_VarDP=0|27|0;DP=27;QUALapprox=838;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:838,0,838:0,0,17,10 +chrX 4220671 . A . . END=4221547 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,536 +chrX 4221548 . T C, 615.04 . AS_QUALapprox=|625|0;AS_VarDP=0|20|0;DP=20;QUALapprox=625;RAW_GT_COUNT=0,0,1;RAW_MQandDP=72000,20;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:625,0,625:0,0,9,11 +chrX 4221549 . G . . END=4221846 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,654 +chrX 4221847 . G A, 1116.04 . AS_QUALapprox=|1126|0;AS_VarDP=0|35|0;DP=38;QUALapprox=1126;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,35,0:35:99:1126,0,1126:0,0,21,14 +chrX 4221848 . C . . END=4222173 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,614 +chrX 4222174 . C T, 923.04 . AS_QUALapprox=|933|0;AS_VarDP=0|23|0;DP=23;QUALapprox=933;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:933,0,933:0,0,10,13 +chrX 4222175 . A . . END=4222198 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,745 +chrX 4222199 . A C, 932.04 . AS_QUALapprox=|942|0;AS_VarDP=0|24|0;DP=26;QUALapprox=942;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:942,0,942:0,0,11,13 +chrX 4222200 . C . . END=4222245 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,765 +chrX 4222246 . CTTTA C, 1520.01 . AS_QUALapprox=|1530|0;AS_VarDP=0|34|0;DP=35;QUALapprox=1530;RAW_GT_COUNT=0,0,1;RAW_MQandDP=125209,35;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1530,0,1530:0,0,13,21 +chrX 4222251 . T . . END=4222442 GT:DP:GQ:MIN_DP:PL 0:37:99:37:0,576 +chrX 4222443 . G A, 700.04 . AS_QUALapprox=|710|0;AS_VarDP=0|21|0;DP=21;QUALapprox=710;RAW_GT_COUNT=0,0,1;RAW_MQandDP=74916,21;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:710,0,710:0,0,9,12 +chrX 4222444 . A . . END=4222908 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,596 +chrX 4222909 . T C, 982.04 . AS_QUALapprox=|992|0;AS_VarDP=0|31|0;DP=33;QUALapprox=992;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:992,0,992:0,0,22,9 +chrX 4222910 . A . . END=4222993 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,873 +chrX 4222994 . A G, 1111.04 . AS_QUALapprox=|1121|0;AS_VarDP=0|36|0;DP=37;QUALapprox=1121;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133200,37;VarDP=36 GT:AD:DP:GQ:PL:SB 1:0,36,0:36:99:1121,0,1121:0,0,20,16 +chrX 4222995 . T . . END=4223418 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,775 +chrX 4223419 . G T, 1012.04 . AS_QUALapprox=|1022|0;AS_VarDP=0|32|0;DP=32;QUALapprox=1022;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1022,0,1022:0,0,13,19 +chrX 4223420 . A . . END=4223748 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,745 +chrX 4223749 . T C, 918.04 . AS_QUALapprox=|928|0;AS_VarDP=0|29|0;DP=31;QUALapprox=928;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:928,0,928:0,0,9,20 +chrX 4223750 . G . . END=4224193 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,834 +chrX 4224194 . A G, 1071.04 . AS_QUALapprox=|1081|0;AS_VarDP=0|34|0;DP=34;QUALapprox=1081;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1081,0,1081:0,0,17,17 +chrX 4224195 . A . . END=4224273 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,928 +chrX 4224274 . T C, 1265.04 . AS_QUALapprox=|1275|0;AS_VarDP=0|40|0;DP=40;QUALapprox=1275;RAW_GT_COUNT=0,0,1;RAW_MQandDP=144000,40;VarDP=40 GT:AD:DP:GQ:PL:SB 1:0,40,0:40:99:1275,0,1275:0,0,18,22 +chrX 4224275 . T . . END=4224544 GT:DP:GQ:MIN_DP:PL 0:39:99:39:0,1107 +chrX 4224545 . C T, 1206.04 . AS_QUALapprox=|1216|0;AS_VarDP=0|37|0;DP=37;QUALapprox=1216;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133200,37;VarDP=37 GT:AD:DP:GQ:PL:SB 1:0,37,0:37:99:1216,0,1216:0,0,19,18 +chrX 4224546 . C . . END=4224881 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,225 +chrX 4224882 . T . . END=4224883 GT:DP:GQ:MIN_DP:PL 0:25:0:25:0,0 +chrX 4224884 . T . . END=4224899 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,705 +chrX 4224900 . TG T, 947.01 . AS_QUALapprox=|957|0;AS_VarDP=1|23|0;BaseQRankSum=-0.495;DP=24;MQRankSum=0.000;QUALapprox=957;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;ReadPosRankSum=1.131;VarDP=24 GT:AD:DP:GQ:PL:SB 1:1,23,0:24:99:957,0,1002:1,0,13,10 +chrX 4224902 . TC T, 947.01 . AS_QUALapprox=|957|0;AS_VarDP=1|23|0;BaseQRankSum=-0.422;DP=24;MQRankSum=0.000;QUALapprox=957;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;ReadPosRankSum=0.905;VarDP=24 GT:AD:DP:GQ:PL:SB 1:1,23,0:24:99:957,0,1002:1,0,13,10 +chrX 4224904 . T . . END=4224910 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,645 +chrX 4224911 . A G, 939.04 . AS_QUALapprox=|949|0;AS_VarDP=1|23|0;BaseQRankSum=-0.481;DP=24;MQRankSum=0.000;QUALapprox=949;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;ReadPosRankSum=0.289;VarDP=24 GT:AD:DP:GQ:PL:SB 1:1,23,0:24:99:949,0,994:1,0,14,9 +chrX 4224912 . T . . END=4225569 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,590 +chrX 4225570 . C T, 938.04 . AS_QUALapprox=|948|0;AS_VarDP=1|30|0;BaseQRankSum=-0.408;DP=32;MQRankSum=0.000;QUALapprox=948;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;ReadPosRankSum=1.230;VarDP=31 GT:AD:DP:GQ:PL:SB 1:1,30,0:31:99:948,0,983:1,0,18,12 +chrX 4225571 . C . . END=4226315 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,774 +chrX 4226316 . A AT, 758.01 . AS_QUALapprox=|768|0;AS_VarDP=0|27|0;DP=30;QUALapprox=768;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:768,0,768:0,0,11,16 +chrX 4226317 . T . . END=4226623 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,735 +chrX 4226624 . T TA,TTA, 880.01 . AS_QUALapprox=|188|890|0;AS_VarDP=0|0|24|0;DP=26;QUALapprox=890;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=24 GT:AD:DP:GQ:PL:SB 2:0,0,24,0:24:99:890,702,0,796:0,0,11,13 +chrX 4226625 . A . . END=4226911 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,619 +chrX 4226912 . C G, 675.04 . AS_QUALapprox=|685|0;AS_VarDP=0|21|0;DP=22;QUALapprox=685;RAW_GT_COUNT=0,0,1;RAW_MQandDP=79200,22;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:685,0,685:0,0,11,10 +chrX 4226913 . A . . END=4227123 GT:DP:GQ:MIN_DP:PL 0:16:45:16:0,45 +chrX 4227124 . ATG A, 350.01 . AS_QUALapprox=|360|0;AS_VarDP=0|8|0;DP=12;QUALapprox=360;RAW_GT_COUNT=0,0,1;RAW_MQandDP=33413,12;VarDP=8 GT:AD:DP:GQ:PL:SB 1:0,8,0:8:99:360,0,360:0,0,3,5 +chrX 4227127 . T . . END=4227128 GT:DP:GQ:MIN_DP:PL 0:8:99:8:0,278 +chrX 4227129 . TACATATATATATATATATATGTATACATATATATATATGTATAC T, 350.01 . AS_QUALapprox=|360|0;AS_VarDP=0|8|0;DP=12;QUALapprox=360;RAW_GT_COUNT=0,0,1;RAW_MQandDP=33413,12;VarDP=8 GT:AD:DP:GQ:PL:SB 1:0,8,0:8:99:360,0,360:0,0,3,5 +chrX 4227174 . A . . END=4227311 GT:DP:GQ:MIN_DP:PL 0:12:99:12:0,133 +chrX 4227312 . G A, 432.04 . AS_QUALapprox=|442|0;AS_VarDP=0|13|0;DP=14;QUALapprox=442;RAW_GT_COUNT=0,0,1;RAW_MQandDP=50400,14;VarDP=13 GT:AD:DP:GQ:PL:SB 1:0,13,0:13:99:442,0,442:0,0,8,5 +chrX 4227313 . T . . END=4227650 GT:DP:GQ:MIN_DP:PL 0:16:99:16:0,352 +chrX 4227651 . A G, 903.04 . AS_QUALapprox=|913|0;AS_VarDP=0|29|0;DP=31;QUALapprox=913;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:913,0,913:0,0,13,16 +chrX 4227652 . T . . END=4227762 GT:DP:GQ:MIN_DP:PL 0:22:99:22:0,560 +chrX 4227763 . TCCCTTCTC T, 712.01 . AS_QUALapprox=|722|0;AS_VarDP=0|16|0;DP=19;QUALapprox=722;RAW_GT_COUNT=0,0,1;RAW_MQandDP=64281,19;VarDP=16 GT:AD:DP:GQ:PL:SB 1:0,16,0:16:99:722,0,722:0,0,9,7 +chrX 4227772 . C . . END=4227803 GT:DP:GQ:MIN_DP:PL 0:17:99:17:0,426 +chrX 4227804 . CTTTTCT C, 800.01 . AS_QUALapprox=|810|0;AS_VarDP=0|18|0;DP=19;QUALapprox=810;RAW_GT_COUNT=0,0,1;RAW_MQandDP=61581,19;VarDP=18 GT:AD:DP:GQ:PL:SB 1:0,18,0:18:99:810,0,810:0,0,8,10 +chrX 4227811 . T . . END=4227859 GT:DP:GQ:MIN_DP:PL 0:17:99:17:0,270 +chrX 4227860 . TTCTTTCTTTCTCTCTTTTTC T, 788.01 . AS_QUALapprox=|798|0;AS_VarDP=0|18|0;DP=22;QUALapprox=798;RAW_GT_COUNT=0,0,1;RAW_MQandDP=70545,22;VarDP=18 GT:AD:DP:GQ:PL:SB 1:0,18,0:18:99:798,0,798:0,0,7,11 +chrX 4227881 . T . . END=4228069 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,487 +chrX 4228070 . T C, 906.04 . AS_QUALapprox=|916|0;AS_VarDP=0|28|0;DP=30;QUALapprox=916;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:916,0,916:0,0,14,14 +chrX 4228071 . T . . END=4228496 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,669 +chrX 4228497 . G A, 1077.04 . AS_QUALapprox=|1087|0;AS_VarDP=0|33|0;DP=33;QUALapprox=1087;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1087,0,1087:0,0,17,16 +chrX 4228498 . T . . END=4228523 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,997 +chrX 4228524 . T C, 1022.04 . AS_QUALapprox=|1032|0;AS_VarDP=0|32|0;DP=34;QUALapprox=1032;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1032,0,1032:0,0,18,14 +chrX 4228525 . A . . END=4229269 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,452 +chrX 4229270 . A G, 476.04 . AS_QUALapprox=|486|0;AS_VarDP=0|14|0;DP=14;QUALapprox=486;RAW_GT_COUNT=0,0,1;RAW_MQandDP=50400,14;VarDP=14 GT:AD:DP:GQ:PL:SB 1:0,14,0:14:99:486,0,486:0,0,8,6 +chrX 4229271 . T . . END=4229304 GT:DP:GQ:MIN_DP:PL 0:13:99:13:0,403 +chrX 4229305 . C T, 501.04 . AS_QUALapprox=|511|0;AS_VarDP=0|15|0;DP=16;QUALapprox=511;RAW_GT_COUNT=0,0,1;RAW_MQandDP=57600,16;VarDP=15 GT:AD:DP:GQ:PL:SB 1:0,15,0:15:99:511,0,511:0,0,8,7 +chrX 4229306 . G . . END=4229337 GT:DP:GQ:MIN_DP:PL 0:17:99:17:0,487 +chrX 4229338 . C T, 580.04 . AS_QUALapprox=|590|0;AS_VarDP=0|17|0;DP=17;QUALapprox=590;RAW_GT_COUNT=0,0,1;RAW_MQandDP=61200,17;VarDP=17 GT:AD:DP:GQ:PL:SB 1:0,17,0:17:99:590,0,590:0,0,11,6 +chrX 4229339 . G . . END=4230130 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,456 +chrX 4230131 . T G, 808.04 . AS_QUALapprox=|818|0;AS_VarDP=0|27|0;DP=27;QUALapprox=818;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:818,0,818:0,0,14,13 +chrX 4230132 . C . . END=4230390 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,567 +chrX 4230391 . T C, 1258.04 . AS_QUALapprox=|1268|0;AS_VarDP=0|29|0;DP=30;QUALapprox=1268;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:1268,0,1268:0,0,16,13 +chrX 4230392 . G C, 1258.04 . AS_QUALapprox=|1268|0;AS_VarDP=0|29|0;DP=30;QUALapprox=1268;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:1268,0,1268:0,0,16,13 +chrX 4230393 . T . . END=4231321 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,755 +chrX 4231322 . G A, 1004.04 . AS_QUALapprox=|1014|0;AS_VarDP=0|32|0;DP=34;QUALapprox=1014;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1014,0,1014:0,0,18,14 +chrX 4231323 . A . . END=4231336 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,940 +chrX 4231337 . C A, 962.04 . AS_QUALapprox=|972|0;AS_VarDP=0|31|0;DP=32;QUALapprox=972;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:972,0,972:0,0,16,15 +chrX 4231338 . A . . END=4231529 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,903 +chrX 4231530 . A G, 1081.04 . AS_QUALapprox=|1091|0;AS_VarDP=0|35|0;DP=37;QUALapprox=1091;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133200,37;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,35,0:35:99:1091,0,1091:0,0,20,15 +chrX 4231531 . C . . END=4231679 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,859 +chrX 4231680 . TA T, 963.01 . AS_QUALapprox=|973|0;AS_VarDP=0|26|0;DP=27;QUALapprox=973;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:973,0,973:0,0,13,13 +chrX 4231682 . A . . END=4232526 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,795 +chrX 4232527 . A G, 923.04 . AS_QUALapprox=|933|0;AS_VarDP=0|28|0;DP=28;QUALapprox=933;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:933,0,933:0,0,14,14 +chrX 4232528 . C . . END=4232648 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,755 +chrX 4232649 . C T, 893.04 . AS_QUALapprox=|903|0;AS_VarDP=1|29|0;BaseQRankSum=-0.293;DP=34;MQRankSum=0.000;QUALapprox=903;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;ReadPosRankSum=0.231;VarDP=30 GT:AD:DP:GQ:PL:SB 1:1,29,0:30:99:903,0,938:1,0,11,18 +chrX 4232650 . G . . END=4232681 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,972 +chrX 4232682 . G A, 971.04 . AS_QUALapprox=|981|0;AS_VarDP=1|32|0;BaseQRankSum=-0.493;DP=34;MQRankSum=0.000;QUALapprox=981;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;ReadPosRankSum=-1.313;VarDP=33 GT:AD:DP:GQ:PL:SB 1:1,32,0:33:99:981,0,1016:1,0,12,20 +chrX 4232683 . G . . END=4232745 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,1047 +chrX 4232746 . G A, 1027.04 . AS_QUALapprox=|1037|0;AS_VarDP=1|33|0;BaseQRankSum=-0.385;DP=35;MQRankSum=0.000;QUALapprox=1037;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;ReadPosRankSum=1.326;VarDP=34 GT:AD:DP:GQ:PL:SB 1:1,33,0:34:99:1037,0,1072:1,0,18,15 +chrX 4232747 . C . . END=4232852 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,939 +chrX 4232853 . A T, 977.04 . AS_QUALapprox=|987|0;AS_VarDP=0|29|0;DP=29;QUALapprox=987;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:987,0,987:0,0,19,10 +chrX 4232854 . T . . END=4232868 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,814 +chrX 4232869 . A G, 771.04 . AS_QUALapprox=|781|0;AS_VarDP=1|24|0;BaseQRankSum=-0.147;DP=27;MQRankSum=0.000;QUALapprox=781;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;ReadPosRankSum=1.734;VarDP=25 GT:AD:DP:GQ:PL:SB 1:1,24,0:25:99:781,0,814:1,0,16,8 +chrX 4232870 . C . . END=4233008 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,898 +chrX 4233009 . G A, 893.04 . AS_QUALapprox=|903|0;AS_VarDP=2|31|0;BaseQRankSum=0.505;DP=34;MQRankSum=0.000;QUALapprox=903;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;ReadPosRankSum=0.038;VarDP=33 GT:AD:DP:GQ:PL:SB 1:2,31,0:33:99:903,0,962:1,1,19,12 +chrX 4233010 . T . . END=4233044 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,907 +chrX 4233045 . T G, 823.04 . AS_QUALapprox=|833|0;AS_VarDP=1|28|0;BaseQRankSum=-0.592;DP=29;MQRankSum=0.000;QUALapprox=833;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;ReadPosRankSum=-0.538;VarDP=29 GT:AD:DP:GQ:PL:SB 1:1,28,0:29:99:833,0,868:0,1,15,13 +chrX 4233046 . G . . END=4233263 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,665 +chrX 4233264 . G C, 719.04 . AS_QUALapprox=|729|0;AS_VarDP=1|24|0;BaseQRankSum=-0.326;DP=26;MQRankSum=0.000;QUALapprox=729;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;ReadPosRankSum=-1.388;VarDP=25 GT:AD:DP:GQ:PL:SB 1:1,24,0:25:99:729,0,764:0,1,12,12 +chrX 4233265 . G . . END=4233861 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,526 +chrX 4233862 . A T, 864.04 . AS_QUALapprox=|874|0;AS_VarDP=0|26|0;DP=28;QUALapprox=874;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:874,0,874:0,0,12,14 +chrX 4233863 . G . . END=4235000 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,591 +chrX 4235001 . A G, 690.04 . AS_QUALapprox=|700|0;AS_VarDP=0|21|0;DP=22;QUALapprox=700;RAW_GT_COUNT=0,0,1;RAW_MQandDP=79200,22;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:700,0,700:0,0,12,9 +chrX 4235002 . T . . END=4235137 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,695 +chrX 4235138 . ATT A, 820.01 . AS_QUALapprox=|830|0;AS_VarDP=0|22|0;DP=25;QUALapprox=830;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:830,0,830:0,0,9,13 +chrX 4235141 . T . . END=4235287 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,759 +chrX 4235288 . C T, 1206.04 . AS_QUALapprox=|1216|0;AS_VarDP=0|37|0;DP=40;QUALapprox=1216;RAW_GT_COUNT=0,0,1;RAW_MQandDP=144000,40;VarDP=37 GT:AD:DP:GQ:PL:SB 1:0,37,0:37:99:1216,0,1216:0,0,22,15 +chrX 4235289 . G . . END=4235499 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,225 +chrX 4235500 . TTA T, 882.01 . AS_QUALapprox=|892|0;AS_VarDP=0|20|0;DP=23;QUALapprox=892;RAW_GT_COUNT=0,0,1;RAW_MQandDP=77045,23;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:892,0,892:0,0,12,8 +chrX 4235503 . T . . END=4235517 GT:DP:GQ:MIN_DP:PL 0:22:99:22:0,634 +chrX 4235518 . GCGAATACCATTATTTTGTTCCTTCTTATGACTGAGTAGTATTCCATTATATATATATA G, 1059.01 . AS_QUALapprox=|1069|0;AS_VarDP=0|24|0;DP=24;QUALapprox=1069;RAW_GT_COUNT=0,0,1;RAW_MQandDP=80645,24;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:1069,0,1069:0,0,13,11 +chrX 4235577 . T . . END=4235613 GT:DP:GQ:MIN_DP:PL 0:22:99:22:0,360 +chrX 4235614 . A ATG, 974.01 . AS_QUALapprox=|984|0;AS_VarDP=0|23|0;DP=23;QUALapprox=984;RAW_GT_COUNT=0,0,1;RAW_MQandDP=77045,23;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:984,0,984:0,0,11,12 +chrX 4235615 . T . . END=4237472 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,485 +chrX 4237473 . G A, 739.04 . AS_QUALapprox=|749|0;AS_VarDP=0|23|0;DP=25;QUALapprox=749;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:749,0,749:0,0,11,12 +chrX 4237474 . G . . END=4237544 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,723 +chrX 4237545 . C T, 1152.04 . AS_QUALapprox=|1162|0;AS_VarDP=0|34|0;DP=34;QUALapprox=1162;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1162,0,1162:0,0,13,21 +chrX 4237546 . C . . END=4237748 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,778 +chrX 4237749 . G A, 804.04 . AS_QUALapprox=|814|0;AS_VarDP=0|26|0;DP=28;QUALapprox=814;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:814,0,814:0,0,11,15 +chrX 4237750 . G . . END=4238017 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,725 +chrX 4238018 . T C, 764.04 . AS_QUALapprox=|774|0;AS_VarDP=0|24|0;DP=24;QUALapprox=774;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:774,0,774:0,0,14,10 +chrX 4238019 . T . . END=4238353 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,576 +chrX 4238354 . C G, 957.04 . AS_QUALapprox=|967|0;AS_VarDP=0|32|0;DP=32;QUALapprox=967;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:967,0,967:0,0,19,13 +chrX 4238355 . T . . END=4238392 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,882 +chrX 4238393 . G T, 1165.04 . AS_QUALapprox=|1175|0;AS_VarDP=0|36|0;DP=37;QUALapprox=1175;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133200,37;VarDP=36 GT:AD:DP:GQ:PL:SB 1:0,36,0:36:99:1175,0,1175:0,0,22,14 +chrX 4238394 . C . . END=4238657 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,858 +chrX 4238658 . T C, 1465.04 . AS_QUALapprox=|1475|0;AS_VarDP=0|33|0;DP=35;QUALapprox=1475;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1475,0,1475:0,0,18,15 +chrX 4238659 . C . . END=4238667 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,977 +chrX 4238668 . T C, 1534.04 . AS_QUALapprox=|1544|0;AS_VarDP=0|35|0;DP=36;QUALapprox=1544;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129600,36;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,35,0:35:99:1544,0,1544:0,0,19,16 +chrX 4238669 . C . . END=4239141 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,813 +chrX 4239142 . CAA C, 825.01 . AS_QUALapprox=|835|0;AS_VarDP=0|23|0;DP=30;QUALapprox=835;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:835,0,835:0,0,9,14 +chrX 4239145 . A . . END=4239914 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,594 +chrX 4239915 . G GAA, 1313.01 . AS_QUALapprox=|1323|0;AS_VarDP=0|30|0;DP=33;QUALapprox=1323;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:1323,0,1323:0,0,15,15 +chrX 4239916 . A . . END=4240405 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,576 +chrX 4240406 . G A, 700.04 . AS_QUALapprox=|710|0;AS_VarDP=0|21|0;DP=21;QUALapprox=710;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75600,21;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:710,0,710:0,0,11,10 +chrX 4240407 . G . . END=4240511 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,773 +chrX 4240512 . C T, 754.04 . AS_QUALapprox=|764|0;AS_VarDP=0|23|0;DP=25;QUALapprox=764;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:764,0,764:0,0,13,10 +chrX 4240513 . G . . END=4240942 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,585 +chrX 4240943 . C T, 1149.04 . AS_QUALapprox=|1159|0;AS_VarDP=0|26|0;DP=29;QUALapprox=1159;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:1159,0,1159:0,0,13,13 +chrX 4240944 . T G, 1149.04 . AS_QUALapprox=|1159|0;AS_VarDP=0|26|0;DP=30;QUALapprox=1159;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:1159,0,1159:0,0,13,13 +chrX 4240945 . C . . END=4240982 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,730 +chrX 4240983 . C T, 744.04 . AS_QUALapprox=|754|0;AS_VarDP=0|24|0;DP=25;QUALapprox=754;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:754,0,754:0,0,12,12 +chrX 4240984 . A . . END=4241055 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,651 +chrX 4241056 . G C, 699.04 . AS_QUALapprox=|709|0;AS_VarDP=0|21|0;DP=22;QUALapprox=709;RAW_GT_COUNT=0,0,1;RAW_MQandDP=79200,22;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:709,0,709:0,0,10,11 +chrX 4241057 . C . . END=4241111 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,626 +chrX 4241112 . C G, 708.04 . AS_QUALapprox=|718|0;AS_VarDP=0|24|0;DP=24;QUALapprox=718;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:718,0,718:0,0,13,11 +chrX 4241113 . A . . END=4241287 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,695 +chrX 4241288 . C T, 1111.04 . AS_QUALapprox=|1121|0;AS_VarDP=0|34|0;DP=35;QUALapprox=1121;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1121,0,1121:0,0,17,17 +chrX 4241289 . T . . END=4241761 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,889 +chrX 4241762 . T A, 923.04 . AS_QUALapprox=|933|0;AS_VarDP=0|29|0;DP=33;QUALapprox=933;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:933,0,933:0,0,9,20 +chrX 4241763 . C . . END=4241809 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,661 +chrX 4241810 . T C, 649.04 . AS_QUALapprox=|659|0;AS_VarDP=0|20|0;DP=24;QUALapprox=659;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:659,0,659:0,0,6,14 +chrX 4241811 . T . . END=4241985 GT:DP:GQ:MIN_DP:PL 0:23:25:17:0,25 +chrX 4241986 . T . . END=4241986 GT:DP:GQ:MIN_DP:PL 0:23:14:23:0,14 +chrX 4241987 . G . . END=4241987 GT:DP:GQ:MIN_DP:PL 0:23:35:23:0,35 +chrX 4241988 . C . . END=4241995 GT:DP:GQ:MIN_DP:PL 0:21:0:21:0,0 +chrX 4241996 . C . . END=4241996 GT:DP:GQ:MIN_DP:PL 0:22:99:22:0,540 +chrX 4241997 . T . . END=4241998 GT:DP:GQ:MIN_DP:PL 0:23:0:23:0,0 +chrX 4241999 . A . . END=4242036 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,138 +chrX 4242037 . CA C, 163.01 . AS_QUALapprox=|173|0;AS_VarDP=0|6|0;DP=19;QUALapprox=173;RAW_GT_COUNT=0,0,1;RAW_MQandDP=68400,19;VarDP=6 GT:AD:DP:GQ:PL:SB 1:0,6,0:6:99:173,0,173:0,0,2,4 +chrX 4242039 . A . . END=4242074 GT:DP:GQ:MIN_DP:PL 0:8:99:8:0,168 +chrX 4242075 . A G, 308.04 . AS_QUALapprox=|318|0;AS_VarDP=0|10|0;DP=23;QUALapprox=318;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;VarDP=10 GT:AD:DP:GQ:PL:SB 1:0,10,0:10:99:318,0,318:0,0,6,4 +chrX 4242076 . T . . END=4242160 GT:DP:GQ:MIN_DP:PL 0:20:99:20:0,318 +chrX 4242161 . G A, 879.04 . AS_QUALapprox=|889|0;AS_VarDP=0|20|0;DP=26;QUALapprox=889;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:889,0,889:0,0,14,6 +chrX 4242162 . A . . END=4242169 GT:DP:GQ:MIN_DP:PL 0:20:99:20:0,640 +chrX 4242170 . A G, 869.04 . AS_QUALapprox=|879|0;AS_VarDP=0|20|0;DP=26;QUALapprox=879;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:879,0,879:0,0,14,6 +chrX 4242171 . C . . END=4242451 GT:DP:GQ:MIN_DP:PL 0:29:90:29:0,90 +chrX 4242452 . C CTA, 824.01 . AS_QUALapprox=|834|0;AS_VarDP=0|19|0;DP=21;QUALapprox=834;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75600,21;VarDP=19 GT:AD:DP:GQ:PL:SB 1:0,19,0:19:99:834,0,834:0,0,6,13 +chrX 4242453 . T . . END=4242453 GT:DP:GQ:MIN_DP:PL 0:19:99:19:0,640 +chrX 4242454 . C CTA, 859.01 . AS_QUALapprox=|869|0;AS_VarDP=0|20|0;DP=21;QUALapprox=869;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75600,21;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:869,0,869:0,0,6,14 +chrX 4242455 . C . . END=4242788 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,546 +chrX 4242789 . T G, 793.04 . AS_QUALapprox=|803|0;AS_VarDP=0|26|0;DP=27;QUALapprox=803;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:803,0,803:0,0,10,16 +chrX 4242790 . T . . END=4243193 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,625 +chrX 4243194 . GA G, 857.01 . AS_QUALapprox=|867|0;AS_VarDP=0|27|0;DP=28;QUALapprox=867;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:867,0,867:0,0,11,16 +chrX 4243196 . A . . END=4243811 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,645 +chrX 4243812 . G A, 859.04 . AS_QUALapprox=|869|0;AS_VarDP=0|25|0;DP=25;QUALapprox=869;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:869,0,869:0,0,15,10 +chrX 4243813 . C . . END=4243833 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,785 +chrX 4243834 . G A, 864.04 . AS_QUALapprox=|874|0;AS_VarDP=0|26|0;DP=26;QUALapprox=874;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:874,0,874:0,0,17,9 +chrX 4243835 . C . . END=4244121 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,694 +chrX 4244122 . C T, 874.04 . AS_QUALapprox=|884|0;AS_VarDP=0|26|0;DP=26;QUALapprox=884;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:884,0,884:0,0,11,15 +chrX 4244123 . T . . END=4244277 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,729 +chrX 4244278 . A G, 824.04 . AS_QUALapprox=|834|0;AS_VarDP=0|24|0;DP=25;QUALapprox=834;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:834,0,834:0,0,14,10 +chrX 4244279 . C . . END=4244894 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,665 +chrX 4244895 . A G, 968.04 . AS_QUALapprox=|978|0;AS_VarDP=0|29|0;DP=30;QUALapprox=978;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:978,0,978:0,0,17,12 +chrX 4244896 . T . . END=4245096 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,898 +chrX 4245097 . T C, 899.04 . AS_QUALapprox=|909|0;AS_VarDP=0|27|0;DP=28;QUALapprox=909;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:909,0,909:0,0,11,16 +chrX 4245098 . A . . END=4245342 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,765 +chrX 4245343 . C T, 1184.04 . AS_QUALapprox=|1194|0;AS_VarDP=0|27|0;DP=27;QUALapprox=1194;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:1194,0,1194:0,0,9,18 +chrX 4245344 . G . . END=4245351 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,883 +chrX 4245352 . A G, 1185.04 . AS_QUALapprox=|1195|0;AS_VarDP=0|27|0;DP=27;QUALapprox=1195;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:1195,0,1195:0,0,9,18 +chrX 4245353 . A . . END=4245489 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,720 +chrX 4245490 . G A, 852.04 . AS_QUALapprox=|862|0;AS_VarDP=0|27|0;DP=29;QUALapprox=862;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:862,0,862:0,0,13,14 +chrX 4245491 . A . . END=4246021 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,640 +chrX 4246022 . C T, 781.04 . AS_QUALapprox=|791|0;AS_VarDP=0|24|0;DP=24;QUALapprox=791;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:791,0,791:0,0,14,10 +chrX 4246023 . A . . END=4246188 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,630 +chrX 4246189 . T C, 779.04 . AS_QUALapprox=|789|0;AS_VarDP=0|24|0;DP=25;QUALapprox=789;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:789,0,789:0,0,11,13 +chrX 4246190 . G . . END=4246581 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,401 +chrX 4246582 . A G, 935.04 . AS_QUALapprox=|945|0;AS_VarDP=0|21|0;DP=22;QUALapprox=945;RAW_GT_COUNT=0,0,1;RAW_MQandDP=78625,22;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:945,0,945:0,0,11,10 +chrX 4246583 . T . . END=4246584 GT:DP:GQ:MIN_DP:PL 0:19:99:19:0,463 +chrX 4246585 . G T, 980.04 . AS_QUALapprox=|990|0;AS_VarDP=0|22|0;DP=22;QUALapprox=990;RAW_GT_COUNT=0,0,1;RAW_MQandDP=78625,22;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:990,0,990:0,0,12,10 +chrX 4246586 . T . . END=4246589 GT:DP:GQ:MIN_DP:PL 0:22:99:22:0,506 +chrX 4246590 . C CTTTTTT,CTTTTTTTT,CTTTTTTTTT, 1012.01 . AS_QUALapprox=|1022|823|752|0;AS_VarDP=0|10|1|1|0;DP=25;QUALapprox=1022;RAW_GT_COUNT=0,0,1;RAW_MQandDP=88325,25;VarDP=12 GT:AD:DP:GQ:PL:SB 1:0,10,1,1,0:12:99:1022,0,199,270,363:0,0,2,10 +chrX 4246591 . T . . END=4246779 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,375 +chrX 4246780 . A G, 644.04 . AS_QUALapprox=|654|0;AS_VarDP=0|20|0;DP=21;QUALapprox=654;RAW_GT_COUNT=0,0,1;RAW_MQandDP=73220,21;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:654,0,654:0,0,10,10 +chrX 4246781 . G . . END=4246984 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,700 +chrX 4246985 . A G, 878.04 . AS_QUALapprox=|888|0;AS_VarDP=0|27|0;DP=31;QUALapprox=888;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:888,0,888:0,0,14,13 +chrX 4246986 . T . . END=4248360 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,704 +chrX 4248361 . T C, 769.04 . AS_QUALapprox=|779|0;AS_VarDP=0|24|0;DP=24;QUALapprox=779;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:779,0,779:0,0,12,12 +chrX 4248362 . G . . END=4249243 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,625 +chrX 4249244 . A G, 972.04 . AS_QUALapprox=|982|0;AS_VarDP=1|30|0;BaseQRankSum=3.052;DP=32;MQRankSum=0.000;QUALapprox=982;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;ReadPosRankSum=-1.063;VarDP=31 GT:AD:DP:GQ:PL:SB 1:1,30,0:31:99:982,0,1007:1,0,12,18 +chrX 4249245 . A . . END=4249417 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,705 +chrX 4249418 . G A, 913.04 . AS_QUALapprox=|923|0;AS_VarDP=0|28|0;DP=28;QUALapprox=923;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:923,0,923:0,0,13,15 +chrX 4249419 . T . . END=4250384 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,654 +chrX 4250385 . C CTTA, 1440.01 . AS_QUALapprox=|1450|0;AS_VarDP=0|33|0;DP=35;QUALapprox=1450;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1450,0,1451:0,0,15,18 +chrX 4250386 . T . . END=4250580 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,701 +chrX 4250581 . A C, 1062.04 . AS_QUALapprox=|1072|0;AS_VarDP=0|33|0;DP=33;QUALapprox=1072;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1072,0,1072:0,0,22,11 +chrX 4250582 . T . . END=4252041 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,456 +chrX 4252042 . A G, 921.04 . AS_QUALapprox=|931|0;AS_VarDP=0|30|0;DP=30;QUALapprox=931;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:931,0,931:0,0,16,14 +chrX 4252043 . T . . END=4252414 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,764 +chrX 4252415 . T C, 1180.04 . AS_QUALapprox=|1190|0;AS_VarDP=1|39|0;BaseQRankSum=-0.516;DP=40;MQRankSum=0.000;QUALapprox=1190;RAW_GT_COUNT=0,0,1;RAW_MQandDP=144000,40;ReadPosRankSum=1.084;VarDP=40 GT:AD:DP:GQ:PL:SB 1:1,39,0:40:99:1190,0,1225:0,1,20,19 +chrX 4252416 . A . . END=4252855 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,759 +chrX 4252856 . A G, 873.04 . AS_QUALapprox=|883|0;AS_VarDP=0|29|0;DP=30;QUALapprox=883;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:883,0,883:0,0,16,13 +chrX 4252857 . A . . END=4253136 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,720 +chrX 4253137 . A C, 1062.04 . AS_QUALapprox=|1072|0;AS_VarDP=0|32|0;DP=32;QUALapprox=1072;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1072,0,1072:0,0,15,17 +chrX 4253138 . C . . END=4253442 GT:DP:GQ:MIN_DP:PL 0:37:99:37:0,879 +chrX 4253443 . C T, 1106.04 . AS_QUALapprox=|1116|0;AS_VarDP=1|37|0;BaseQRankSum=-0.619;DP=39;MQRankSum=0.000;QUALapprox=1116;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140400,39;ReadPosRankSum=-1.140;VarDP=38 GT:AD:DP:GQ:PL:SB 1:1,37,0:38:99:1116,0,1151:1,0,15,22 +chrX 4253444 . T . . END=4253761 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,715 +chrX 4253762 . C T, 1260.04 . AS_QUALapprox=|1270|0;AS_VarDP=0|40|0;DP=41;QUALapprox=1270;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147600,41;VarDP=40 GT:AD:DP:GQ:PL:SB 1:0,40,0:40:99:1270,0,1270:0,0,21,19 +chrX 4253763 . T . . END=4253784 GT:DP:GQ:MIN_DP:PL 0:38:99:38:0,1096 +chrX 4253785 . A T, 1081.04 . AS_QUALapprox=|1091|0;AS_VarDP=0|35|0;DP=38;QUALapprox=1091;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,35,0:35:99:1091,0,1091:0,0,17,18 +chrX 4253786 . C . . END=4254598 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,620 +chrX 4254599 . ATGTG A, 1040.01 . AS_QUALapprox=|1050|0;AS_VarDP=0|24|0;DP=28;QUALapprox=1050;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:1050,0,1050:0,0,14,10 +chrX 4254604 . T . . END=4254985 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,749 +chrX 4254986 . A C, 988.04 . AS_QUALapprox=|998|0;AS_VarDP=0|29|0;DP=30;QUALapprox=998;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:998,0,998:0,0,12,17 +chrX 4254987 . T . . END=4255676 GT:DP:GQ:MIN_DP:PL 0:40:99:40:0,734 +chrX 4255677 . A G, 1347.04 . AS_QUALapprox=|1357|0;AS_VarDP=0|43|0;DP=44;QUALapprox=1357;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158400,44;VarDP=43 GT:AD:DP:GQ:PL:SB 1:0,43,0:43:99:1357,0,1357:0,0,17,26 +chrX 4255678 . G . . END=4256256 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,634 +chrX 4256257 . G A, 1077.04 . AS_QUALapprox=|1087|0;AS_VarDP=0|34|0;DP=34;QUALapprox=1087;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1087,0,1087:0,0,14,20 +chrX 4256258 . T . . END=4256330 GT:DP:GQ:MIN_DP:PL 0:38:99:38:0,1003 +chrX 4256331 . T G, 1166.04 . AS_QUALapprox=|1176|0;AS_VarDP=0|37|0;DP=38;QUALapprox=1176;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;VarDP=37 GT:AD:DP:GQ:PL:SB 1:0,37,0:37:99:1176,0,1176:0,0,17,20 +chrX 4256332 . T . . END=4256410 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,809 +chrX 4256411 . G T, 804.04 . AS_QUALapprox=|814|0;AS_VarDP=0|25|0;DP=26;QUALapprox=814;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:814,0,814:0,0,14,11 +chrX 4256412 . A . . END=4257009 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,551 +chrX 4257010 . A C, 684.04 . AS_QUALapprox=|694|0;AS_VarDP=0|22|0;DP=22;QUALapprox=694;RAW_GT_COUNT=0,0,1;RAW_MQandDP=79200,22;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:694,0,694:0,0,8,14 +chrX 4257011 . G . . END=4257462 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,586 +chrX 4257463 . G A, 1104.04 . AS_QUALapprox=|1114|0;AS_VarDP=0|36|0;DP=39;QUALapprox=1114;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140400,39;VarDP=36 GT:AD:DP:GQ:PL:SB 1:0,36,0:36:99:1114,0,1114:0,0,17,19 +chrX 4257464 . A . . END=4258369 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,677 +chrX 4258370 . G A, 946.04 . AS_QUALapprox=|956|0;AS_VarDP=0|29|0;DP=29;QUALapprox=956;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:956,0,956:0,0,13,16 +chrX 4258371 . G . . END=4259291 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,670 +chrX 4259292 . T C, 660.04 . AS_QUALapprox=|670|0;AS_VarDP=0|21|0;DP=22;QUALapprox=670;RAW_GT_COUNT=0,0,1;RAW_MQandDP=79200,22;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:670,0,670:0,0,7,14 +chrX 4259293 . G . . END=4259732 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,636 +chrX 4259733 . CATATA C, 1276.01 . AS_QUALapprox=|1286|0;AS_VarDP=0|29|0;DP=32;QUALapprox=1286;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:1286,0,1286:0,0,13,16 +chrX 4259739 . A . . END=4262529 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,477 +chrX 4262530 . G A, 859.04 . AS_QUALapprox=|869|0;AS_VarDP=0|25|0;DP=26;QUALapprox=869;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:869,0,869:0,0,9,16 +chrX 4262531 . T . . END=4262727 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,849 +chrX 4262728 . G GGGAGACC, 1295.01 . AS_QUALapprox=|1305|0;AS_VarDP=0|29|0;DP=30;QUALapprox=1305;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:1305,0,1305:0,0,19,10 +chrX 4262729 . G . . END=4262973 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,729 +chrX 4262974 . G GAA, 319.01 . AS_QUALapprox=|329|0;AS_VarDP=0|11|0;DP=23;QUALapprox=329;RAW_GT_COUNT=0,0,1;RAW_MQandDP=80800,23;VarDP=11 GT:AD:DP:GQ:PL:SB 1:0,11,0:11:99:329,0,329:0,0,7,4 +chrX 4262975 . A . . END=4263752 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,416 +chrX 4263753 . T C, 1104.04 . AS_QUALapprox=|1114|0;AS_VarDP=0|34|0;DP=36;QUALapprox=1114;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129600,36;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1114,0,1114:0,0,21,13 +chrX 4263754 . A . . END=4264014 GT:DP:GQ:MIN_DP:PL 0:40:99:40:0,1037 +chrX 4264015 . T C, 1508.04 . AS_QUALapprox=|1518|0;AS_VarDP=0|45|0;DP=45;QUALapprox=1518;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162000,45;VarDP=45 GT:AD:DP:GQ:PL:SB 1:0,45,0:45:99:1518,0,1518:0,0,20,25 +chrX 4264016 . T . . END=4264366 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,834 +chrX 4264367 . G A, 1072.04 . AS_QUALapprox=|1082|0;AS_VarDP=0|34|0;DP=34;QUALapprox=1082;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1082,0,1082:0,0,14,20 +chrX 4264368 . G . . END=4264391 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,1022 +chrX 4264392 . T A, 1047.04 . AS_QUALapprox=|1057|0;AS_VarDP=0|33|0;DP=33;QUALapprox=1057;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1057,0,1057:0,0,15,18 +chrX 4264393 . C . . END=4266307 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,393 +chrX 4266308 . A G, 769.04 . AS_QUALapprox=|779|0;AS_VarDP=0|25|0;DP=26;QUALapprox=779;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:779,0,779:0,0,15,10 +chrX 4266309 . A . . END=4267402 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,213 +chrX 4267403 . A G, 723.04 . AS_QUALapprox=|733|0;AS_VarDP=1|25|0;BaseQRankSum=1.819;DP=27;MQRankSum=0.000;QUALapprox=733;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;ReadPosRankSum=-0.400;VarDP=26 GT:AD:DP:GQ:PL:SB 1:1,25,0:26:99:733,0,743:0,1,9,16 +chrX 4267404 . T . . END=4267677 GT:DP:GQ:MIN_DP:PL 0:14:35:1:0,35 +chrX 4267678 . A . . END=4267678 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 4267679 . T . . END=4267776 GT:DP:GQ:MIN_DP:PL 0:6:45:6:0,45 +chrX 4267777 . T TATAATATATAGTATATTATAATAATATAGC, 286.01 . AS_QUALapprox=|296|0;AS_VarDP=1|10|0;BaseQRankSum=1.465;DP=16;MQRankSum=0.000;QUALapprox=296;RAW_GT_COUNT=0,0,1;RAW_MQandDP=43628,16;ReadPosRankSum=-0.809;VarDP=11 GT:AD:DP:GQ:PL:SB 1:1,10,0:11:99:296,0,308:0,1,8,2 +chrX 4267778 . A . . END=4268623 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,387 +chrX 4268624 . G A, 927.04 . AS_QUALapprox=|937|0;AS_VarDP=1|31|0;BaseQRankSum=2.068;DP=32;MQRankSum=0.000;QUALapprox=937;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;ReadPosRankSum=0.108;VarDP=32 GT:AD:DP:GQ:PL:SB 1:1,31,0:32:99:937,0,947:0,1,15,16 +chrX 4268625 . C . . END=4271012 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,520 +chrX 4271013 . A AAAT, 636.01 . AS_QUALapprox=|646|0;AS_VarDP=0|16|0;DP=24;QUALapprox=646;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=16 GT:AD:DP:GQ:PL:SB 1:0,16,0:16:99:646,0,647:0,0,10,6 +chrX 4271014 . A . . END=4271469 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,491 +chrX 4271470 . C T, 948.04 . AS_QUALapprox=|958|0;AS_VarDP=0|29|0;DP=33;QUALapprox=958;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:958,0,958:0,0,20,9 +chrX 4271471 . G . . END=4273152 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,710 +chrX 4273153 . TACACAC T, 1230.01 . AS_QUALapprox=|1240|0;AS_VarDP=0|28|0;DP=33;QUALapprox=1240;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:1240,0,1240:0,0,16,12 +chrX 4273160 . A . . END=4273360 GT:DP:GQ:MIN_DP:PL 0:38:99:38:0,938 +chrX 4273361 . A T, 1046.04 . AS_QUALapprox=|1056|0;AS_VarDP=0|32|0;DP=33;QUALapprox=1056;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1056,0,1056:0,0,10,22 +chrX 4273362 . T . . END=4274168 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,174 +chrX 4274169 . C T, 923.04 . AS_QUALapprox=|933|0;AS_VarDP=0|28|0;DP=28;QUALapprox=933;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:933,0,933:0,0,14,14 +chrX 4274170 . A . . END=4275175 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,506 +chrX 4275176 . T C, 1086.04 . AS_QUALapprox=|1096|0;AS_VarDP=0|35|0;DP=38;QUALapprox=1096;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,35,0:35:99:1096,0,1096:0,0,20,15 +chrX 4275177 . G . . END=4275926 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,655 +chrX 4275927 . C CA, 410.01 . AS_QUALapprox=|420|0;AS_VarDP=1|22|0;BaseQRankSum=1.037;DP=27;MQRankSum=0.000;QUALapprox=420;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;ReadPosRankSum=-0.228;VarDP=23 GT:AD:DP:GQ:PL:SB 1:1,22,0:23:99:420,0,443:0,1,10,12 +chrX 4275928 . A . . END=4277713 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,270 +chrX 4277714 . CTTT C, 423.01 . AS_QUALapprox=|433|0;AS_VarDP=0|12|0;DP=26;QUALapprox=433;RAW_GT_COUNT=0,0,1;RAW_MQandDP=89481,26;VarDP=12 GT:AD:DP:GQ:PL:SB 1:0,12,0:12:99:433,0,644:0,0,2,4 +chrX 4277718 . CTTTCT *,C, 423.01 . AS_QUALapprox=|0|433|0;AS_VarDP=0|0|6|0;DP=26;QUALapprox=433;RAW_GT_COUNT=0,0,1;RAW_MQandDP=89481,26;VarDP=6 GT:AD:DP:GQ:PL:SB 2:0,0,6,0:6:99:433,854,0,644:0,0,2,4 +chrX 4277724 . T . . END=4277726 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,270 +chrX 4277727 . T C, 423.04 . AS_QUALapprox=|433|0;AS_VarDP=0|12|0;DP=26;QUALapprox=433;RAW_GT_COUNT=0,0,1;RAW_MQandDP=89481,26;VarDP=12 GT:AD:DP:GQ:PL:SB 1:0,12,0:12:99:433,0,644:0,0,2,4 +chrX 4277728 . T . . END=4278158 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,456 +chrX 4278159 . G A, 764.04 . AS_QUALapprox=|774|0;AS_VarDP=0|24|0;DP=24;QUALapprox=774;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:774,0,774:0,0,14,10 +chrX 4278160 . T . . END=4279158 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,590 +chrX 4279159 . G T, 927.04 . AS_QUALapprox=|937|0;AS_VarDP=1|29|0;BaseQRankSum=2.354;DP=31;MQRankSum=0.000;QUALapprox=937;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;ReadPosRankSum=-1.388;VarDP=30 GT:AD:DP:GQ:PL:SB 1:1,29,0:30:99:937,0,946:1,0,15,14 +chrX 4279160 . T . . END=4280143 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,694 +chrX 4280144 . T C, 952.04 . AS_QUALapprox=|962|0;AS_VarDP=0|30|0;DP=31;QUALapprox=962;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:962,0,962:0,0,13,17 +chrX 4280145 . C . . END=4280680 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,685 +chrX 4280681 . T C, 824.04 . AS_QUALapprox=|834|0;AS_VarDP=0|26|0;DP=27;QUALapprox=834;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:834,0,834:0,0,13,13 +chrX 4280682 . G . . END=4281418 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,536 +chrX 4281419 . T C, 725.04 . AS_QUALapprox=|735|0;AS_VarDP=0|22|0;DP=23;QUALapprox=735;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:735,0,735:0,0,10,12 +chrX 4281420 . G . . END=4281526 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,591 +chrX 4281527 . A T, 640.04 . AS_QUALapprox=|650|0;AS_VarDP=0|20|0;DP=21;QUALapprox=650;RAW_GT_COUNT=0,0,1;RAW_MQandDP=74500,21;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:650,0,650:0,0,8,12 +chrX 4281528 . G . . END=4281546 GT:DP:GQ:MIN_DP:PL 0:20:99:20:0,506 +chrX 4281547 . C CTT, 396.01 . AS_QUALapprox=|406|0;AS_VarDP=0|14|0;DP=22;QUALapprox=406;RAW_GT_COUNT=0,0,1;RAW_MQandDP=78100,22;VarDP=14 GT:AD:DP:GQ:PL:SB 1:0,14,0:14:99:406,0,406:0,0,5,9 +chrX 4281548 . T . . END=4282010 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,467 +chrX 4282011 . A T, 764.04 . AS_QUALapprox=|774|0;AS_VarDP=0|24|0;DP=25;QUALapprox=774;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:774,0,774:0,0,11,13 +chrX 4282012 . G . . END=4283126 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,601 +chrX 4283127 . A T, 1050.04 . AS_QUALapprox=|1060|0;AS_VarDP=0|34|0;DP=34;QUALapprox=1060;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1060,0,1060:0,0,16,18 +chrX 4283128 . A . . END=4283233 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,918 +chrX 4283234 . C T, 1006.04 . AS_QUALapprox=|1016|0;AS_VarDP=0|31|0;DP=32;QUALapprox=1016;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1016,0,1016:0,0,19,12 +chrX 4283235 . G . . END=4285134 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,491 +chrX 4285135 . G A, 754.04 . AS_QUALapprox=|764|0;AS_VarDP=0|22|0;DP=24;QUALapprox=764;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:764,0,764:0,0,11,11 +chrX 4285136 . G . . END=4285960 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,685 +chrX 4285961 . C T, 1018.04 . AS_QUALapprox=|1028|0;AS_VarDP=0|31|0;DP=32;QUALapprox=1028;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1028,0,1028:0,0,11,20 +chrX 4285962 . C . . END=4286449 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,526 +chrX 4286450 . T A, 940.04 . AS_QUALapprox=|950|0;AS_VarDP=0|28|0;DP=28;QUALapprox=950;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:950,0,950:0,0,15,13 +chrX 4286451 . C . . END=4286938 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,874 +chrX 4286939 . C A, 1012.04 . AS_QUALapprox=|1022|0;AS_VarDP=0|32|0;DP=32;QUALapprox=1022;RAW_GT_COUNT=0,0,1;RAW_MQandDP=112329,32;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1022,0,1022:0,0,16,16 +chrX 4286940 . C . . END=4287417 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,745 +chrX 4287418 . T C, 1308.04 . AS_QUALapprox=|1318|0;AS_VarDP=0|30|0;DP=34;QUALapprox=1318;RAW_GT_COUNT=0,0,1;RAW_MQandDP=121609,34;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:1318,0,1319:0,0,15,15 +chrX 4287419 . G GCACACACA,GCGCGCACACACA, 1204.01 . AS_QUALapprox=|0|1214|0;AS_VarDP=0|0|24|0;DP=34;QUALapprox=1214;RAW_GT_COUNT=0,0,1;RAW_MQandDP=121609,34;VarDP=24 GT:AD:DP:GQ:PL:SB 2:0,0,24,0:24:99:1214,1283,0,1249:0,0,14,10 +chrX 4287420 . C . . END=4287676 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,749 +chrX 4287677 . G T, 1296.04 . AS_QUALapprox=|1306|0;AS_VarDP=0|39|0;DP=39;QUALapprox=1306;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140400,39;VarDP=39 GT:AD:DP:GQ:PL:SB 1:0,39,0:39:99:1306,0,1306:0,0,25,14 +chrX 4287678 . A . . END=4287854 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,684 +chrX 4287855 . A AAGG, 971.01 . AS_QUALapprox=|981|0;AS_VarDP=0|22|0;DP=25;QUALapprox=981;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:981,0,982:0,0,7,15 +chrX 4287856 . A . . END=4288243 GT:DP:GQ:MIN_DP:PL 0:22:99:22:0,575 +chrX 4288244 . C G, 814.04 . AS_QUALapprox=|824|0;AS_VarDP=0|25|0;DP=25;QUALapprox=824;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:824,0,824:0,0,14,11 +chrX 4288245 . T . . END=4288424 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,591 +chrX 4288425 . G C, 630.04 . AS_QUALapprox=|640|0;AS_VarDP=0|19|0;DP=19;QUALapprox=640;RAW_GT_COUNT=0,0,1;RAW_MQandDP=68400,19;VarDP=19 GT:AD:DP:GQ:PL:SB 1:0,19,0:19:99:640,0,640:0,0,11,8 +chrX 4288426 . T . . END=4289934 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,596 +chrX 4289935 . A AGT, 609.01 . AS_QUALapprox=|619|0;AS_VarDP=0|20|0;DP=27;QUALapprox=619;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:619,0,620:0,0,12,8 +chrX 4289936 . G . . END=4290337 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,683 +chrX 4290338 . G A, 1388.04 . AS_QUALapprox=|1398|0;AS_VarDP=0|42|0;DP=44;QUALapprox=1398;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158400,44;VarDP=42 GT:AD:DP:GQ:PL:SB 1:0,42,0:42:99:1398,0,1398:0,0,21,21 +chrX 4290339 . G . . END=4290556 GT:DP:GQ:MIN_DP:PL 0:40:99:40:0,989 +chrX 4290557 . G A, 1008.04 . AS_QUALapprox=|1018|0;AS_VarDP=0|31|0;DP=33;QUALapprox=1018;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1018,0,1018:0,0,12,19 +chrX 4290558 . G . . END=4290773 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,695 +chrX 4290774 . G A, 978.04 . AS_QUALapprox=|988|0;AS_VarDP=0|29|0;DP=30;QUALapprox=988;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:988,0,988:0,0,17,12 +chrX 4290775 . C . . END=4290859 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,849 +chrX 4290860 . C A, 807.04 . AS_QUALapprox=|817|0;AS_VarDP=1|26|0;BaseQRankSum=2.286;DP=27;MQRankSum=0.000;QUALapprox=817;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;ReadPosRankSum=-1.606;VarDP=27 GT:AD:DP:GQ:PL:SB 1:1,26,0:27:99:817,0,841:1,0,15,11 +chrX 4290861 . A . . END=4291175 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,780 +chrX 4291176 . TTATATGTAAC T, 1105.01 . AS_QUALapprox=|1115|0;AS_VarDP=0|25|0;DP=27;QUALapprox=1115;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:1115,0,1115:0,0,10,15 +chrX 4291187 . C . . END=4291782 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,580 +chrX 4291783 . A ATTTTTCTC, 903.01 . AS_QUALapprox=|913|0;AS_VarDP=0|21|0;DP=25;QUALapprox=913;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:913,0,914:0,0,11,10 +chrX 4291784 . T . . END=4292423 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,432 +chrX 4292424 . TACACAC T, 846.01 . AS_QUALapprox=|856|0;AS_VarDP=0|19|0;DP=27;QUALapprox=856;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=19 GT:AD:DP:GQ:PL:SB 1:0,19,0:19:99:856,0,856:0,0,9,10 +chrX 4292431 . A . . END=4292669 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,758 +chrX 4292670 . G C, 913.04 . AS_QUALapprox=|923|0;AS_VarDP=0|28|0;DP=29;QUALapprox=923;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:923,0,923:0,0,14,14 +chrX 4292671 . C . . END=4292737 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,829 +chrX 4292738 . A T, 710.04 . AS_QUALapprox=|720|0;AS_VarDP=0|24|0;DP=28;QUALapprox=720;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:720,0,784:0,0,15,9 +chrX 4292739 . A . . END=4293030 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,782 +chrX 4293031 . T TATCAATCA,TATCTATCAATCA, 998.01 . AS_QUALapprox=|135|1008|0;AS_VarDP=0|0|19|0;DP=26;QUALapprox=1008;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=19 GT:AD:DP:GQ:PL:SB 2:0,0,19,0:19:99:1008,873,0,941:0,0,9,10 +chrX 4293032 . A . . END=4293151 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,481 +chrX 4293152 . C CATCT, 930.01 . AS_QUALapprox=|940|0;AS_VarDP=0|21|0;DP=24;QUALapprox=940;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:940,0,940:0,0,8,13 +chrX 4293153 . A . . END=4293490 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,620 +chrX 4293491 . T TTATCTATCTATCTATCTATC, 1018.01 . AS_QUALapprox=|1028|0;AS_VarDP=0|23|0;DP=28;QUALapprox=1028;RAW_GT_COUNT=0,0,1;RAW_MQandDP=98964,28;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:1028,0,1029:0,0,11,12 +chrX 4293492 . T . . END=4293568 GT:DP:GQ:MIN_DP:PL 0:19:99:19:0,491 +chrX 4293569 . GTCTGTCTA G, 709.01 . AS_QUALapprox=|719|0;AS_VarDP=0|18|0;DP=18;QUALapprox=719;RAW_GT_COUNT=0,0,1;RAW_MQandDP=62161,18;VarDP=18 GT:AD:DP:GQ:PL:SB 1:0,18,0:18:99:719,0,719:0,0,12,6 +chrX 4293578 . T . . END=4293639 GT:DP:GQ:MIN_DP:PL 0:18:99:18:0,516 +chrX 4293640 . C CATCT, 612.01 . AS_QUALapprox=|622|0;AS_VarDP=0|14|0;DP=26;QUALapprox=622;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=14 GT:AD:DP:GQ:PL:SB 1:0,14,0:14:99:622,0,623:0,0,3,11 +chrX 4293641 . A . . END=4294607 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,606 +chrX 4294608 . A G, 852.04 . AS_QUALapprox=|862|0;AS_VarDP=0|26|0;DP=27;QUALapprox=862;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:862,0,862:0,0,11,15 +chrX 4294609 . G . . END=4296150 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,556 +chrX 4296151 . GTAGATAGA G, 612.01 . AS_QUALapprox=|622|0;AS_VarDP=0|14|0;DP=22;QUALapprox=622;RAW_GT_COUNT=0,0,1;RAW_MQandDP=79200,22;VarDP=14 GT:AD:DP:GQ:PL:SB 1:0,14,0:14:99:622,0,622:0,0,5,9 +chrX 4296160 . T . . END=4296819 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,397 +chrX 4296820 . C T, 760.04 . AS_QUALapprox=|770|0;AS_VarDP=0|23|0;DP=26;QUALapprox=770;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:770,0,770:0,0,13,10 +chrX 4296821 . T . . END=4297544 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,576 +chrX 4297545 . G T, 933.04 . AS_QUALapprox=|943|0;AS_VarDP=0|28|0;DP=29;QUALapprox=943;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:943,0,943:0,0,11,17 +chrX 4297546 . G . . END=4297910 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,611 +chrX 4297911 . T C, 784.04 . AS_QUALapprox=|794|0;AS_VarDP=0|24|0;DP=25;QUALapprox=794;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:794,0,794:0,0,10,14 +chrX 4297912 . T . . END=4298666 GT:DP:GQ:MIN_DP:PL 0:19:99:19:0,395 +chrX 4298667 . C T, 551.04 . AS_QUALapprox=|561|0;AS_VarDP=0|17|0;DP=18;QUALapprox=561;RAW_GT_COUNT=0,0,1;RAW_MQandDP=64800,18;VarDP=17 GT:AD:DP:GQ:PL:SB 1:0,17,0:17:99:561,0,561:0,0,13,4 +chrX 4298668 . G . . END=4298992 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,393 +chrX 4298993 . C T, 640.04 . AS_QUALapprox=|650|0;AS_VarDP=1|19|0;BaseQRankSum=4.588;DP=21;MQRankSum=0.000;QUALapprox=650;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75600,21;ReadPosRankSum=-1.215;VarDP=20 GT:AD:DP:GQ:PL:SB 1:1,19,0:20:99:650,0,660:1,0,9,10 +chrX 4298994 . G . . END=4299324 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,512 +chrX 4299325 . A AAG, 805.01 . AS_QUALapprox=|815|0;AS_VarDP=0|23|0;DP=29;QUALapprox=815;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:815,0,815:0,0,11,12 +chrX 4299326 . A . . END=4299726 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,759 +chrX 4299727 . T C, 898.04 . AS_QUALapprox=|908|0;AS_VarDP=0|28|0;DP=28;QUALapprox=908;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:908,0,908:0,0,12,16 +chrX 4299728 . C . . END=4299791 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,829 +chrX 4299792 . GTTGTTT G, 1149.01 . AS_QUALapprox=|1159|0;AS_VarDP=0|26|0;DP=28;QUALapprox=1159;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:1159,0,1159:0,0,10,16 +chrX 4299799 . T . . END=4300312 GT:DP:GQ:MIN_DP:PL 0:22:99:22:0,457 +chrX 4300313 . T C, 744.04 . AS_QUALapprox=|754|0;AS_VarDP=0|23|0;DP=23;QUALapprox=754;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:754,0,754:0,0,13,10 +chrX 4300314 . A . . END=4300810 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,565 +chrX 4300811 . C T, 600.04 . AS_QUALapprox=|610|0;AS_VarDP=0|20|0;DP=22;QUALapprox=610;RAW_GT_COUNT=0,0,1;RAW_MQandDP=79200,22;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:610,0,610:0,0,11,9 +chrX 4300812 . T . . END=4301880 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,605 +chrX 4301881 . G C, 760.04 . AS_QUALapprox=|770|0;AS_VarDP=0|23|0;DP=24;QUALapprox=770;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:770,0,770:0,0,10,13 +chrX 4301882 . T . . END=4302047 GT:DP:GQ:MIN_DP:PL 0:18:99:18:0,412 +chrX 4302048 . T C, 446.04 . AS_QUALapprox=|456|0;AS_VarDP=0|14|0;DP=14;QUALapprox=456;RAW_GT_COUNT=0,0,1;RAW_MQandDP=50400,14;VarDP=14 GT:AD:DP:GQ:PL:SB 1:0,14,0:14:99:456,0,456:0,0,4,10 +chrX 4302049 . T . . END=4302286 GT:DP:GQ:MIN_DP:PL 0:20:99:20:0,377 +chrX 4302287 . C G, 491.04 . AS_QUALapprox=|501|0;AS_VarDP=0|16|0;DP=16;QUALapprox=501;RAW_GT_COUNT=0,0,1;RAW_MQandDP=57600,16;VarDP=16 GT:AD:DP:GQ:PL:SB 1:0,16,0:16:99:501,0,501:0,0,10,6 +chrX 4302288 . T . . END=4302677 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,432 +chrX 4302678 . A G, 754.04 . AS_QUALapprox=|764|0;AS_VarDP=0|23|0;DP=25;QUALapprox=764;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:764,0,764:0,0,12,11 +chrX 4302679 . C . . END=4303142 GT:DP:GQ:MIN_DP:PL 0:21:99:21:0,229 +chrX 4303143 . C G, 635.04 . AS_QUALapprox=|645|0;AS_VarDP=0|21|0;DP=23;QUALapprox=645;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:645,0,645:0,0,13,8 +chrX 4303144 . T . . END=4306407 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,550 +chrX 4306408 . T A, 803.04 . AS_QUALapprox=|813|0;AS_VarDP=0|27|0;DP=29;QUALapprox=813;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:813,0,813:0,0,12,15 +chrX 4306409 . T . . END=4309685 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,357 +chrX 4309686 . T C, 767.04 . AS_QUALapprox=|777|0;AS_VarDP=0|26|0;DP=26;QUALapprox=777;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:777,0,777:0,0,12,14 +chrX 4309687 . A . . END=4311879 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,436 +chrX 4311880 . A C, 793.04 . AS_QUALapprox=|803|0;AS_VarDP=0|26|0;DP=26;QUALapprox=803;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:803,0,803:0,0,16,10 +chrX 4311881 . C . . END=4312590 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,522 +chrX 4312591 . C T, 971.04 . AS_QUALapprox=|981|0;AS_VarDP=0|30|0;DP=32;QUALapprox=981;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:981,0,981:0,0,13,17 +chrX 4312592 . T . . END=4314291 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,419 +chrX 4314292 . CA C, 198.01 . AS_QUALapprox=|208|0;AS_VarDP=1|12|0;BaseQRankSum=1.074;DP=22;MQRankSum=0.000;QUALapprox=208;RAW_GT_COUNT=0,0,1;RAW_MQandDP=77941,22;ReadPosRankSum=-0.671;VarDP=13 GT:AD:DP:GQ:PL:SB 1:1,12,0:13:99:208,0,225:0,1,7,5 +chrX 4314294 . A . . END=4314460 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,410 +chrX 4314461 . G GAA, 455.01 . AS_QUALapprox=|465|0;AS_VarDP=0|15|0;DP=22;QUALapprox=465;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75625,22;VarDP=15 GT:AD:DP:GQ:PL:SB 1:0,15,0:15:99:465,0,465:0,0,7,8 +chrX 4314462 . A . . END=4319882 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,381 +chrX 4319883 . CA C, 811.01 . AS_QUALapprox=|821|0;AS_VarDP=0|23|0;DP=25;QUALapprox=821;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:821,0,821:0,0,7,16 +chrX 4319885 . A . . END=4321789 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,645 +chrX 4321790 . A T, 687.04 . AS_QUALapprox=|697|0;AS_VarDP=0|22|0;DP=25;QUALapprox=697;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:697,0,697:0,0,8,14 +chrX 4321791 . A . . END=4326633 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,387 +chrX 4326634 . G T, 1112.04 . AS_QUALapprox=|1122|0;AS_VarDP=0|34|0;DP=35;QUALapprox=1122;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1122,0,1122:0,0,15,19 +chrX 4326635 . C . . END=4329119 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,402 +chrX 4329120 . A C, 937.04 . AS_QUALapprox=|947|0;AS_VarDP=0|31|0;DP=32;QUALapprox=947;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:947,0,947:0,0,14,17 +chrX 4329121 . T . . END=4334423 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,481 +chrX 4334424 . T A, 918.04 . AS_QUALapprox=|928|0;AS_VarDP=1|30|0;BaseQRankSum=-0.516;DP=31;MQRankSum=0.000;QUALapprox=928;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;ReadPosRankSum=0.728;VarDP=31 GT:AD:DP:GQ:PL:SB 1:1,30,0:31:99:928,0,963:0,1,13,17 +chrX 4334425 . C . . END=4335625 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,135 +chrX 4335626 . C A, 121.04 . AS_QUALapprox=|131|0;AS_VarDP=0|4|0;DP=16;QUALapprox=131;RAW_GT_COUNT=0,0,1;RAW_MQandDP=55600,16;VarDP=4 GT:AD:DP:GQ:PL:SB 1:0,4,0:4:99:131,0,132:0,0,2,2 +chrX 4335627 . T . . END=4335627 GT:DP:GQ:MIN_DP:PL 0:14:99:14:0,437 +chrX 4335628 . C A,CTATA, 465.04 . AS_QUALapprox=|475|169|0;AS_VarDP=0|4|0|0;DP=17;QUALapprox=475;RAW_GT_COUNT=0,0,1;RAW_MQandDP=59200,17;VarDP=4 GT:AD:DP:GQ:PL:SB 1:0,4,0,0:4:99:475,0,306,391:0,0,2,2 +chrX 4335629 . T . . END=4343483 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,253 +chrX 4343484 . G T, 1107.04 . AS_QUALapprox=|1117|0;AS_VarDP=0|34|0;DP=37;QUALapprox=1117;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133200,37;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1117,0,1117:0,0,17,17 +chrX 4343485 . C . . END=4343749 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,878 +chrX 4343750 . C T, 909.04 . AS_QUALapprox=|919|0;AS_VarDP=0|27|0;DP=27;QUALapprox=919;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:919,0,919:0,0,12,15 +chrX 4343751 . C . . END=4343901 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,894 +chrX 4343902 . T C, 933.04 . AS_QUALapprox=|943|0;AS_VarDP=0|30|0;DP=31;QUALapprox=943;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:943,0,943:0,0,12,18 +chrX 4343903 . C . . END=4346845 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,535 +chrX 4346846 . C G, 1066.04 . AS_QUALapprox=|1076|0;AS_VarDP=0|33|0;DP=34;QUALapprox=1076;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1076,0,1076:0,0,18,15 +chrX 4346847 . T . . END=4349935 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,505 +chrX 4349936 . A G, 923.04 . AS_QUALapprox=|933|0;AS_VarDP=0|28|0;DP=31;QUALapprox=933;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:933,0,933:0,0,17,11 +chrX 4349937 . A . . END=4351880 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,585 +chrX 4351881 . C T, 1164.04 . AS_QUALapprox=|1174|0;AS_VarDP=0|37|0;DP=41;QUALapprox=1174;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147600,41;VarDP=37 GT:AD:DP:GQ:PL:SB 1:0,37,0:37:99:1174,0,1174:0,0,12,25 +chrX 4351882 . A . . END=4352639 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,626 +chrX 4352640 . C T, 1270.04 . AS_QUALapprox=|1280|0;AS_VarDP=0|40|0;DP=40;QUALapprox=1280;RAW_GT_COUNT=0,0,1;RAW_MQandDP=144000,40;VarDP=40 GT:AD:DP:GQ:PL:SB 1:0,40,0:40:99:1280,0,1280:0,0,23,17 +chrX 4352641 . G . . END=4356125 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,457 +chrX 4356126 . T A, 941.04 . AS_QUALapprox=|951|0;AS_VarDP=0|30|0;DP=31;QUALapprox=951;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:951,0,951:0,0,16,14 +chrX 4356127 . C . . END=4358277 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,174 +chrX 4358278 . C CAA, 214.01 . AS_QUALapprox=|224|0;AS_VarDP=1|9|0;BaseQRankSum=-0.210;DP=20;MQRankSum=-0.126;QUALapprox=224;RAW_GT_COUNT=0,0,1;RAW_MQandDP=65466,20;ReadPosRankSum=-0.674;VarDP=10 GT:AD:DP:GQ:PL:SB 1:1,9,0:10:99:224,0,254:1,0,3,6 +chrX 4358279 . A . . END=4359121 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,506 +chrX 4359122 . C T, 1271.04 . AS_QUALapprox=|1281|0;AS_VarDP=0|38|0;DP=38;QUALapprox=1281;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;VarDP=38 GT:AD:DP:GQ:PL:SB 1:0,38,0:38:99:1281,0,1281:0,0,22,16 +chrX 4359123 . A . . END=4359412 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,959 +chrX 4359413 . G A, 1176.04 . AS_QUALapprox=|1186|0;AS_VarDP=0|37|0;DP=37;QUALapprox=1186;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133200,37;VarDP=37 GT:AD:DP:GQ:PL:SB 1:0,37,0:37:99:1186,0,1186:0,0,21,16 +chrX 4359414 . T . . END=4360665 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,575 +chrX 4360666 . A G, 978.04 . AS_QUALapprox=|988|0;AS_VarDP=0|29|0;DP=31;QUALapprox=988;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:988,0,988:0,0,11,18 +chrX 4360667 . T . . END=4361848 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,659 +chrX 4361849 . C T, 888.04 . AS_QUALapprox=|898|0;AS_VarDP=0|28|0;DP=28;QUALapprox=898;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:898,0,898:0,0,13,15 +chrX 4361850 . T . . END=4367798 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,328 +chrX 4367799 . C A, 1139.04 . AS_QUALapprox=|1149|0;AS_VarDP=0|37|0;DP=37;QUALapprox=1149;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133200,37;VarDP=37 GT:AD:DP:GQ:PL:SB 1:0,37,0:37:99:1149,0,1149:0,0,18,19 +chrX 4367800 . A . . END=4370018 GT:DP:GQ:MIN_DP:PL 0:30:39:16:0,39 +chrX 4370019 . A G, 1504.04 . AS_QUALapprox=|1514|0;AS_VarDP=0|47|0;DP=47;QUALapprox=1514;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;VarDP=47 GT:AD:DP:GQ:PL:SB 1:0,47,0:47:99:1514,0,1514:0,0,29,18 +chrX 4370020 . C . . END=4370746 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,645 +chrX 4370747 . A G, 997.04 . AS_QUALapprox=|1007|0;AS_VarDP=0|32|0;DP=32;QUALapprox=1007;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1007,0,1007:0,0,18,14 +chrX 4370748 . T . . END=4376358 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,377 +chrX 4376359 . A G, 819.04 . AS_QUALapprox=|829|0;AS_VarDP=0|25|0;DP=28;QUALapprox=829;RAW_GT_COUNT=0,0,1;RAW_MQandDP=99225,28;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:829,0,829:0,0,12,13 +chrX 4376360 . C . . END=4376454 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,710 +chrX 4376455 . A G, 858.04 . AS_QUALapprox=|868|0;AS_VarDP=0|27|0;DP=27;QUALapprox=868;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:868,0,868:0,0,13,14 +chrX 4376456 . C . . END=4376516 GT:DP:GQ:MIN_DP:PL 0:22:99:22:0,556 +chrX 4376517 . A G, 491.04 . AS_QUALapprox=|501|0;AS_VarDP=0|16|0;DP=18;QUALapprox=501;RAW_GT_COUNT=0,0,1;RAW_MQandDP=64800,18;VarDP=16 GT:AD:DP:GQ:PL:SB 1:0,16,0:16:99:501,0,501:0,0,6,10 +chrX 4376518 . G . . END=4377693 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,466 +chrX 4377694 . TTAAGA T, 1372.01 . AS_QUALapprox=|1382|0;AS_VarDP=1|32|0;BaseQRankSum=-0.590;DP=35;MQRankSum=0.000;QUALapprox=1382;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;ReadPosRankSum=1.576;VarDP=33 GT:AD:DP:GQ:PL:SB 1:1,32,0:33:99:1382,0,1427:1,0,12,20 +chrX 4377700 . A . . END=4380229 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,571 +chrX 4380230 . G T, 1161.04 . AS_QUALapprox=|1171|0;AS_VarDP=0|35|0;DP=36;QUALapprox=1171;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129600,36;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,35,0:35:99:1171,0,1171:0,0,18,17 +chrX 4380231 . T . . END=4381039 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,620 +chrX 4381040 . A G, 968.04 . AS_QUALapprox=|978|0;AS_VarDP=0|30|0;DP=30;QUALapprox=978;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:978,0,978:0,0,16,14 +chrX 4381041 . A . . END=4381477 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,428 +chrX 4381478 . A C, 843.04 . AS_QUALapprox=|853|0;AS_VarDP=0|26|0;DP=26;QUALapprox=853;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:853,0,853:0,0,9,17 +chrX 4381479 . T . . END=4381621 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,681 +chrX 4381622 . A G, 883.04 . AS_QUALapprox=|893|0;AS_VarDP=0|28|0;DP=29;QUALapprox=893;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:893,0,893:0,0,17,11 +chrX 4381623 . T . . END=4383021 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,669 +chrX 4383022 . CTTTTTTTTTTTT C, 477.01 . AS_QUALapprox=|487|0;AS_VarDP=0|11|0;DP=22;QUALapprox=487;RAW_GT_COUNT=0,0,1;RAW_MQandDP=78964,22;VarDP=11 GT:AD:DP:GQ:PL:SB 1:0,11,0:11:99:487,0,487:0,0,4,7 +chrX 4383035 . T . . END=4387102 GT:DP:GQ:MIN_DP:PL 0:19:20:18:0,20 +chrX 4387103 . T A, 703.04 . AS_QUALapprox=|713|0;AS_VarDP=0|23|0;DP=23;QUALapprox=713;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:713,0,713:0,0,7,16 +chrX 4387104 . A . . END=4387484 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,710 +chrX 4387485 . CA C, 845.01 . AS_QUALapprox=|855|0;AS_VarDP=0|33|0;DP=39;QUALapprox=855;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140400,39;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:855,0,855:0,0,18,15 +chrX 4387487 . A . . END=4388205 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,972 +chrX 4388206 . G A, 1002.04 . AS_QUALapprox=|1012|0;AS_VarDP=0|31|0;DP=31;QUALapprox=1012;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1012,0,1012:0,0,15,16 +chrX 4388207 . A . . END=4389715 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,516 +chrX 4389716 . G A, 686.04 . AS_QUALapprox=|696|0;AS_VarDP=0|23|0;DP=26;QUALapprox=696;RAW_GT_COUNT=0,0,1;RAW_MQandDP=88020,26;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:696,0,697:0,0,9,14 +chrX 4389717 . T . . END=4390489 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,491 +chrX 4390490 . T C, 1160.04 . AS_QUALapprox=|1170|0;AS_VarDP=0|39|0;DP=42;QUALapprox=1170;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151200,42;VarDP=39 GT:AD:DP:GQ:PL:SB 1:0,39,0:39:99:1170,0,1170:0,0,19,20 +chrX 4390491 . G . . END=4390781 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,263 +chrX 4390782 . G GATATAT,GATATATAT, 251.01 . AS_QUALapprox=|261|125|0;AS_VarDP=0|4|0|0;DP=15;QUALapprox=261;RAW_GT_COUNT=0,0,1;RAW_MQandDP=54000,15;VarDP=4 GT:AD:DP:GQ:PL:SB 1:0,4,0,0:4:99:261,0,136,199:0,0,0,4 +chrX 4390783 . A . . END=4390825 GT:DP:GQ:MIN_DP:PL 0:14:35:13:0,35 +chrX 4390826 . C T, 286.71 . AS_QUALapprox=|308|0;AS_VarDP=0|10|0;DP=13;QUALapprox=308;RAW_GT_COUNT=0,0,1;RAW_MQandDP=45049,13;VarDP=10 GT:AD:DP:GQ:PL:SB 1:0,10,0:10:99:308,0,288:0,0,0,4 +chrX 4390827 . A . . END=4392581 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,133 +chrX 4392582 . C CAA, 396.01 . AS_QUALapprox=|406|0;AS_VarDP=0|17|0;DP=28;QUALapprox=406;RAW_GT_COUNT=0,0,1;RAW_MQandDP=95474,28;VarDP=17 GT:AD:DP:GQ:PL:SB 1:0,17,0:17:99:406,0,407:0,0,6,11 +chrX 4392583 . A . . END=4393752 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,526 +chrX 4393753 . G T, 1174.04 . AS_QUALapprox=|1184|0;AS_VarDP=0|38|0;DP=39;QUALapprox=1184;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140400,39;VarDP=38 GT:AD:DP:GQ:PL:SB 1:0,38,0:38:99:1184,0,1184:0,0,20,18 +chrX 4393754 . T . . END=4396139 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,313 +chrX 4396140 . C CTG, 1249.01 . AS_QUALapprox=|1259|0;AS_VarDP=0|28|0;DP=32;QUALapprox=1259;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:1259,0,1260:0,0,15,13 +chrX 4396141 . T . . END=4398507 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,481 +chrX 4398508 . A G, 1012.04 . AS_QUALapprox=|1022|0;AS_VarDP=1|33|0;BaseQRankSum=-0.533;DP=34;MQRankSum=0.000;QUALapprox=1022;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;ReadPosRankSum=-0.918;VarDP=34 GT:AD:DP:GQ:PL:SB 1:1,33,0:34:99:1022,0,1057:0,1,17,16 +chrX 4398509 . C . . END=4402446 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,417 +chrX 4402447 . G C, 743.04 . AS_QUALapprox=|753|0;AS_VarDP=0|25|0;DP=25;QUALapprox=753;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:753,0,753:0,0,14,11 +chrX 4402448 . T . . END=4402602 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,225 +chrX 4402603 . A T, 381.04 . AS_QUALapprox=|391|0;AS_VarDP=0|9|0;DP=19;QUALapprox=391;RAW_GT_COUNT=0,0,1;RAW_MQandDP=65825,19;VarDP=9 GT:AD:DP:GQ:PL:SB 1:0,9,0:9:99:391,0,392:0,0,4,5 +chrX 4402604 . T . . END=4402604 GT:DP:GQ:MIN_DP:PL 0:17:99:17:0,360 +chrX 4402605 . A T, 381.04 . AS_QUALapprox=|391|0;AS_VarDP=0|9|0;DP=19;QUALapprox=391;RAW_GT_COUNT=0,0,1;RAW_MQandDP=65825,19;VarDP=9 GT:AD:DP:GQ:PL:SB 1:0,9,0:9:99:391,0,392:0,0,4,5 +chrX 4402606 . T . . END=4402606 GT:DP:GQ:MIN_DP:PL 0:17:99:17:0,360 +chrX 4402607 . A T, 381.04 . AS_QUALapprox=|391|0;AS_VarDP=0|9|0;DP=17;QUALapprox=391;RAW_GT_COUNT=0,0,1;RAW_MQandDP=58625,17;VarDP=9 GT:AD:DP:GQ:PL:SB 1:0,9,0:9:99:391,0,392:0,0,4,5 +chrX 4402608 . T . . END=4402608 GT:DP:GQ:MIN_DP:PL 0:15:99:15:0,360 +chrX 4402609 . A T,ATTTTTTTT, 616.04 . AS_QUALapprox=|626|141|0;AS_VarDP=0|9|0|0;DP=16;QUALapprox=626;RAW_GT_COUNT=0,0,1;RAW_MQandDP=55025,16;VarDP=9 GT:AD:DP:GQ:PL:SB 1:0,9,0,0:9:99:626,0,485,556:0,0,4,5 +chrX 4402610 . T . . END=4403736 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,243 +chrX 4403737 . C T, 839.04 . AS_QUALapprox=|849|0;AS_VarDP=0|25|0;DP=26;QUALapprox=849;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:849,0,849:0,0,7,18 +chrX 4403738 . A . . END=4404551 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,664 +chrX 4404552 . T C, 1067.04 . AS_QUALapprox=|1077|0;AS_VarDP=0|34|0;DP=36;QUALapprox=1077;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129600,36;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1077,0,1077:0,0,18,16 +chrX 4404553 . A . . END=4404977 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,606 +chrX 4404978 . T C, 906.04 . AS_QUALapprox=|916|0;AS_VarDP=0|30|0;DP=31;QUALapprox=916;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:916,0,916:0,0,16,14 +chrX 4404979 . T . . END=4406491 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,338 +chrX 4406492 . TGATAGATAGATA T, 1096.01 . AS_QUALapprox=|1106|0;AS_VarDP=0|25|0;DP=27;QUALapprox=1106;RAW_GT_COUNT=0,0,1;RAW_MQandDP=95408,27;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:1106,0,1106:0,0,12,13 +chrX 4406505 . G . . END=4407121 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,764 +chrX 4407122 . G A, 868.04 . AS_QUALapprox=|878|0;AS_VarDP=0|27|0;DP=29;QUALapprox=878;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:878,0,878:0,0,13,14 +chrX 4407123 . T . . END=4410242 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,582 +chrX 4410243 . G C, 732.04 . AS_QUALapprox=|742|0;AS_VarDP=0|25|0;DP=27;QUALapprox=742;RAW_GT_COUNT=0,0,1;RAW_MQandDP=95050,27;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:742,0,742:0,0,12,13 +chrX 4410244 . T . . END=4410617 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,487 +chrX 4410618 . A G, 693.04 . AS_QUALapprox=|703|0;AS_VarDP=0|21|0;DP=22;QUALapprox=703;RAW_GT_COUNT=0,0,1;RAW_MQandDP=77536,22;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:703,0,703:0,0,14,7 +chrX 4410619 . A . . END=4411285 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,491 +chrX 4411286 . C T, 844.04 . AS_QUALapprox=|854|0;AS_VarDP=0|26|0;DP=27;QUALapprox=854;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:854,0,854:0,0,14,12 +chrX 4411287 . A . . END=4415302 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,278 +chrX 4415303 . CA C, 508.01 . AS_QUALapprox=|518|0;AS_VarDP=0|20|0;DP=27;QUALapprox=518;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93986,27;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:518,0,518:0,0,10,10 +chrX 4415305 . A . . END=4416777 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,571 +chrX 4416778 . T G, 902.04 . AS_QUALapprox=|912|0;AS_VarDP=0|29|0;DP=30;QUALapprox=912;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:912,0,912:0,0,12,17 +chrX 4416779 . T . . END=4420124 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,511 +chrX 4420125 . A G, 614.04 . AS_QUALapprox=|624|0;AS_VarDP=1|20|0;BaseQRankSum=-0.162;DP=21;MQRankSum=0.000;QUALapprox=624;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75600,21;ReadPosRankSum=0.248;VarDP=21 GT:AD:DP:GQ:PL:SB 1:1,20,0:21:99:624,0,659:1,0,14,6 +chrX 4420126 . A . . END=4420965 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,446 +chrX 4420966 . A C, 603.04 . AS_QUALapprox=|613|0;AS_VarDP=0|19|0;DP=20;QUALapprox=613;RAW_GT_COUNT=0,0,1;RAW_MQandDP=72000,20;VarDP=19 GT:AD:DP:GQ:PL:SB 1:0,19,0:19:99:613,0,613:0,0,12,7 +chrX 4420967 . A . . END=4423417 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,491 +chrX 4423418 . G A, 794.04 . AS_QUALapprox=|804|0;AS_VarDP=0|24|0;DP=25;QUALapprox=804;RAW_GT_COUNT=0,0,1;RAW_MQandDP=87129,25;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:804,0,804:0,0,7,17 +chrX 4423419 . C . . END=4428654 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,581 +chrX 4428655 . C CTCTTA, 1070.01 . AS_QUALapprox=|1080|0;AS_VarDP=0|24|0;DP=26;QUALapprox=1080;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:1080,0,1080:0,0,8,16 +chrX 4428656 . T . . END=4430000 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,442 +chrX 4430001 . T C, 893.04 . AS_QUALapprox=|903|0;AS_VarDP=0|28|0;DP=29;QUALapprox=903;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:903,0,903:0,0,10,18 +chrX 4430002 . C . . END=4431513 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,487 +chrX 4431514 . G T, 963.04 . AS_QUALapprox=|973|0;AS_VarDP=0|30|0;DP=31;QUALapprox=973;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:973,0,973:0,0,16,14 +chrX 4431515 . A . . END=4433570 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,461 +chrX 4433571 . G A, 1067.04 . AS_QUALapprox=|1077|0;AS_VarDP=0|33|0;DP=34;QUALapprox=1077;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1077,0,1077:0,0,18,15 +chrX 4433572 . T . . END=4438198 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,456 +chrX 4438199 . AT A, 464.01 . AS_QUALapprox=|474|0;AS_VarDP=0|16|0;DP=16;QUALapprox=474;RAW_GT_COUNT=0,0,1;RAW_MQandDP=57600,16;VarDP=16 GT:AD:DP:GQ:PL:SB 1:0,16,0:16:99:474,0,474:0,0,10,6 +chrX 4438201 . T . . END=4442667 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,546 +chrX 4442668 . TAC T, 841.01 . AS_QUALapprox=|851|0;AS_VarDP=0|24|0;DP=30;QUALapprox=851;RAW_GT_COUNT=0,0,1;RAW_MQandDP=106704,30;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:851,0,851:0,0,4,20 +chrX 4442671 . A . . END=4442982 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,242 +chrX 4442983 . G . . END=4442983 GT:DP:GQ:MIN_DP:PL 0:38:0:38:0,0 +chrX 4442984 . T . . END=4443025 GT:DP:GQ:MIN_DP:PL 0:29:58:29:0,58 +chrX 4443026 . C . . END=4443026 GT:DP:GQ:MIN_DP:PL 0:29:0:29:0,0 +chrX 4443027 . A . . END=4443308 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,580 +chrX 4443309 . G GTA, 761.01 . AS_QUALapprox=|771|0;AS_VarDP=0|20|0;DP=32;QUALapprox=771;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:771,0,771:0,0,8,12 +chrX 4443310 . T . . END=4443930 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,496 +chrX 4443931 . A G, 712.04 . AS_QUALapprox=|722|0;AS_VarDP=0|24|0;DP=24;QUALapprox=722;RAW_GT_COUNT=0,0,1;RAW_MQandDP=83889,24;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:722,0,722:0,0,10,14 +chrX 4443932 . T . . END=4444659 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,348 +chrX 4444660 . A G, 814.04 . AS_QUALapprox=|824|0;AS_VarDP=0|26|0;DP=26;QUALapprox=824;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:824,0,824:0,0,16,10 +chrX 4444661 . C . . END=4446526 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,651 +chrX 4446527 . G A, 1117.04 . AS_QUALapprox=|1127|0;AS_VarDP=0|34|0;DP=35;QUALapprox=1127;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1127,0,1127:0,0,19,15 +chrX 4446528 . T . . END=4448050 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,457 +chrX 4448051 . A G, 898.04 . AS_QUALapprox=|908|0;AS_VarDP=0|28|0;DP=29;QUALapprox=908;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:908,0,908:0,0,9,19 +chrX 4448052 . T . . END=4449046 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,700 +chrX 4449047 . ATT A, 320.01 . AS_QUALapprox=|330|0;AS_VarDP=0|11|0;DP=27;QUALapprox=330;RAW_GT_COUNT=0,0,1;RAW_MQandDP=94625,27;VarDP=11 GT:AD:DP:GQ:PL:SB 1:0,11,0:11:99:330,0,330:0,0,5,6 +chrX 4449050 . T . . END=4450141 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,428 +chrX 4450142 . A T, 1007.04 . AS_QUALapprox=|1017|0;AS_VarDP=0|31|0;DP=31;QUALapprox=1017;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1017,0,1017:0,0,16,15 +chrX 4450143 . T . . END=4451536 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,651 +chrX 4451537 . A G, 812.04 . AS_QUALapprox=|822|0;AS_VarDP=0|26|0;DP=27;QUALapprox=822;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:822,0,822:0,0,10,16 +chrX 4451538 . G . . END=4451748 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,886 +chrX 4451749 . A G, 844.04 . AS_QUALapprox=|854|0;AS_VarDP=0|26|0;DP=26;QUALapprox=854;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:854,0,854:0,0,14,12 +chrX 4451750 . T . . END=4452012 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,809 +chrX 4452013 . A G, 972.04 . AS_QUALapprox=|982|0;AS_VarDP=0|31|0;DP=31;QUALapprox=982;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:982,0,982:0,0,18,13 +chrX 4452014 . C . . END=4452354 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,649 +chrX 4452355 . A T, 903.04 . AS_QUALapprox=|913|0;AS_VarDP=0|28|0;DP=31;QUALapprox=913;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:913,0,913:0,0,16,12 +chrX 4452356 . C . . END=4452719 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,710 +chrX 4452720 . G A, 1057.04 . AS_QUALapprox=|1067|0;AS_VarDP=0|33|0;DP=33;QUALapprox=1067;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1067,0,1067:0,0,18,15 +chrX 4452721 . C . . END=4453905 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,481 +chrX 4453906 . T C, 660.04 . AS_QUALapprox=|670|0;AS_VarDP=0|21|0;DP=22;QUALapprox=670;RAW_GT_COUNT=0,0,1;RAW_MQandDP=79200,22;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:670,0,670:0,0,9,12 +chrX 4453907 . A . . END=4453954 GT:DP:GQ:MIN_DP:PL 0:21:99:21:0,551 +chrX 4453955 . G A,GA, 469.01 . AS_QUALapprox=|0|479|0;AS_VarDP=0|0|16|0;DP=23;QUALapprox=479;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82009,23;VarDP=16 GT:AD:DP:GQ:PL:SB 2:0,0,16,0:16:99:479,640,0,559:0,0,6,10 +chrX 4453956 . A . . END=4455937 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,233 +chrX 4455938 . T TAAAAAAA, 466.01 . AS_QUALapprox=|476|0;AS_VarDP=0|11|0;DP=18;QUALapprox=476;RAW_GT_COUNT=0,0,1;RAW_MQandDP=54356,18;VarDP=11 GT:AD:DP:GQ:PL:SB 1:0,11,0:11:99:476,0,477:0,0,5,6 +chrX 4455939 . A . . END=4455978 GT:DP:GQ:MIN_DP:PL 0:16:99:16:0,315 +chrX 4455979 . A C, 561.04 . AS_QUALapprox=|571|0;AS_VarDP=0|17|0;DP=18;QUALapprox=571;RAW_GT_COUNT=0,0,1;RAW_MQandDP=58800,18;VarDP=17 GT:AD:DP:GQ:PL:SB 1:0,17,0:17:99:571,0,571:0,0,10,7 +chrX 4455980 . A . . END=4458393 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,467 +chrX 4458394 . G A, 883.04 . AS_QUALapprox=|893|0;AS_VarDP=0|26|0;DP=26;QUALapprox=893;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:893,0,893:0,0,14,12 +chrX 4458395 . T . . END=4461912 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,522 +chrX 4461913 . GAAGTCATTGTACAAGGAAAACATTCTGTATGCACTAAGATTTCCCAAAAGAT G, 784.01 . AS_QUALapprox=|794|0;AS_VarDP=0|18|0;DP=21;QUALapprox=794;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75600,21;VarDP=18 GT:AD:DP:GQ:PL:SB 1:0,18,0:18:99:794,0,794:0,0,11,7 +chrX 4461966 . A . . END=4462788 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,626 +chrX 4462789 . AAAAC A, 1095.01 . AS_QUALapprox=|1105|0;AS_VarDP=0|25|0;DP=31;QUALapprox=1105;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:1105,0,1105:0,0,11,14 +chrX 4462794 . A . . END=4464619 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,292 +chrX 4464620 . G A, 1180.04 . AS_QUALapprox=|1190|0;AS_VarDP=0|36|0;DP=36;QUALapprox=1190;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129600,36;VarDP=36 GT:AD:DP:GQ:PL:SB 1:0,36,0:36:99:1190,0,1190:0,0,16,20 +chrX 4464621 . G . . END=4464852 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,700 +chrX 4464853 . A C, 784.04 . AS_QUALapprox=|794|0;AS_VarDP=0|24|0;DP=24;QUALapprox=794;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:794,0,794:0,0,12,12 +chrX 4464854 . C . . END=4465392 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,425 +chrX 4465393 . AAAAGAAAG A, 386.01 . AS_QUALapprox=|396|0;AS_VarDP=0|9|0;DP=16;QUALapprox=396;RAW_GT_COUNT=0,0,1;RAW_MQandDP=57600,16;VarDP=9 GT:AD:DP:GQ:PL:SB 1:0,9,0:9:99:396,0,396:0,0,5,4 +chrX 4465402 . A . . END=4466654 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,405 +chrX 4466655 . A G, 918.04 . AS_QUALapprox=|928|0;AS_VarDP=0|27|0;DP=27;QUALapprox=928;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:928,0,928:0,0,17,10 +chrX 4466656 . G . . END=4467927 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,614 +chrX 4467928 . G T, 630.04 . AS_QUALapprox=|640|0;AS_VarDP=1|21|0;BaseQRankSum=2.006;DP=23;MQRankSum=0.000;QUALapprox=640;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;ReadPosRankSum=0.158;VarDP=22 GT:AD:DP:GQ:PL:SB 1:1,21,0:22:99:640,0,650:1,0,15,6 +chrX 4467929 . G . . END=4468134 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,684 +chrX 4468135 . T C, 685.04 . AS_QUALapprox=|695|0;AS_VarDP=0|21|0;DP=21;QUALapprox=695;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75600,21;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:695,0,695:0,0,12,9 +chrX 4468136 . C . . END=4468702 GT:DP:GQ:MIN_DP:PL 0:21:99:21:0,315 +chrX 4468703 . G GTATA, 192.01 . AS_QUALapprox=|202|0;AS_VarDP=0|5|0;DP=12;QUALapprox=202;RAW_GT_COUNT=0,0,1;RAW_MQandDP=43200,12;VarDP=5 GT:AD:DP:GQ:PL:SB 1:0,5,0:5:99:202,0,202:0,0,3,2 +chrX 4468704 . T . . END=4470538 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,178 +chrX 4470539 . G T, 1008.04 . AS_QUALapprox=|1018|0;AS_VarDP=2|33|0;BaseQRankSum=1.262;DP=36;MQRankSum=0.000;QUALapprox=1018;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129600,36;ReadPosRankSum=1.102;VarDP=35 GT:AD:DP:GQ:PL:SB 1:2,33,0:35:99:1018,0,1062:2,0,12,21 +chrX 4470540 . C . . END=4471605 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,202 +chrX 4471606 . A AAGAAAGAAAGAAAGAC, 857.01 . AS_QUALapprox=|867|0;AS_VarDP=0|20|0;DP=22;QUALapprox=867;RAW_GT_COUNT=0,0,1;RAW_MQandDP=70495,22;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:867,0,868:0,0,14,6 +chrX 4471607 . A . . END=4473086 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,268 +chrX 4473087 . T C, 901.04 . AS_QUALapprox=|911|0;AS_VarDP=0|28|0;DP=29;QUALapprox=911;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:911,0,911:0,0,15,13 +chrX 4473088 . C . . END=4478257 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,323 +chrX 4478258 . A AAGG, 558.01 . AS_QUALapprox=|568|0;AS_VarDP=0|13|0;DP=14;QUALapprox=568;RAW_GT_COUNT=0,0,1;RAW_MQandDP=50400,14;VarDP=13 GT:AD:DP:GQ:PL:SB 1:0,13,0:13:99:568,0,568:0,0,9,4 +chrX 4478259 . A . . END=4478292 GT:DP:GQ:MIN_DP:PL 0:12:99:12:0,283 +chrX 4478293 . GGAAA G, 125.01 . AS_QUALapprox=|135|0;AS_VarDP=0|3|0;DP=10;QUALapprox=135;RAW_GT_COUNT=0,0,1;RAW_MQandDP=34000,10;VarDP=3 GT:AD:DP:GQ:PL:SB 1:0,3,0:3:99:135,0,135:0,0,3,0 +chrX 4478298 . G . . END=4479297 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,135 +chrX 4479298 . C CT, 538.01 . AS_QUALapprox=|548|0;AS_VarDP=1|24|0;BaseQRankSum=-0.246;DP=30;MQRankSum=0.000;QUALapprox=548;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;ReadPosRankSum=0.208;VarDP=25 GT:AD:DP:GQ:PL:SB 1:1,24,0:25:99:548,0,574:0,1,17,7 +chrX 4479299 . T . . END=4479950 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,421 +chrX 4479951 . G GA, 478.01 . AS_QUALapprox=|488|0;AS_VarDP=1|22|0;BaseQRankSum=1.843;DP=27;MQRankSum=0.000;QUALapprox=488;RAW_GT_COUNT=0,0,1;RAW_MQandDP=94625,27;ReadPosRankSum=0.679;VarDP=23 GT:AD:DP:GQ:PL:SB 1:1,22,0:23:99:488,0,494:0,1,11,11 +chrX 4479952 . A . . END=4480921 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,515 +chrX 4480922 . T C, 1126.04 . AS_QUALapprox=|1136|0;AS_VarDP=0|36|0;DP=37;QUALapprox=1136;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133200,37;VarDP=36 GT:AD:DP:GQ:PL:SB 1:0,36,0:36:99:1136,0,1136:0,0,18,18 +chrX 4480923 . G . . END=4484102 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,630 +chrX 4484103 . A C, 603.04 . AS_QUALapprox=|613|0;AS_VarDP=1|22|0;BaseQRankSum=-0.629;DP=27;MQRankSum=0.000;QUALapprox=613;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;ReadPosRankSum=0.653;VarDP=23 GT:AD:DP:GQ:PL:SB 1:1,22,0:23:99:613,0,704:1,0,9,6 +chrX 4484104 . C . . END=4492347 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,444 +chrX 4492348 . T C, 516.04 . AS_QUALapprox=|526|0;AS_VarDP=0|16|0;DP=17;QUALapprox=526;RAW_GT_COUNT=0,0,1;RAW_MQandDP=61200,17;VarDP=16 GT:AD:DP:GQ:PL:SB 1:0,16,0:16:99:526,0,526:0,0,5,11 +chrX 4492349 . G . . END=4497324 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,348 +chrX 4497325 . C T, 1097.04 . AS_QUALapprox=|1107|0;AS_VarDP=0|33|0;DP=35;QUALapprox=1107;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1107,0,1107:0,0,12,21 +chrX 4497326 . T . . END=4497658 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,765 +chrX 4497659 . C A, 1183.04 . AS_QUALapprox=|1193|0;AS_VarDP=0|28|0;DP=29;QUALapprox=1193;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:1193,0,1193:0,0,17,11 +chrX 4497660 . G . . END=4497681 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,709 +chrX 4497682 . C T, 1104.04 . AS_QUALapprox=|1114|0;AS_VarDP=0|25|0;DP=26;QUALapprox=1114;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:1114,0,1114:0,0,16,9 +chrX 4497683 . G . . END=4497746 GT:DP:GQ:MIN_DP:PL 0:19:99:19:0,481 +chrX 4497747 . AT A, 210.01 . AS_QUALapprox=|220|0;AS_VarDP=1|11|0;BaseQRankSum=-0.223;DP=17;MQRankSum=0.000;QUALapprox=220;RAW_GT_COUNT=0,0,1;RAW_MQandDP=61200,17;ReadPosRankSum=-0.724;VarDP=12 GT:AD:DP:GQ:PL:SB 1:1,11,0:12:99:220,0,241:1,0,6,5 +chrX 4497749 . T . . END=4500487 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,362 +chrX 4500488 . CA C, 78.01 . AS_QUALapprox=|88|0;AS_VarDP=3|7|0;BaseQRankSum=-0.282;DP=19;MQRankSum=0.000;QUALapprox=88;RAW_GT_COUNT=0,0,1;RAW_MQandDP=67716,19;ReadPosRankSum=0.812;VarDP=10 GT:AD:DP:GQ:PL:SB 1:3,7,0:10:88:88,0,125:0,3,6,1 +chrX 4500490 . A . . END=4501664 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,561 +chrX 4501665 . A G, 1001.04 . AS_QUALapprox=|1011|0;AS_VarDP=0|32|0;DP=33;QUALapprox=1011;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1011,0,1011:0,0,19,13 +chrX 4501666 . T . . END=4508722 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,174 +chrX 4508723 . A G, 773.04 . AS_QUALapprox=|783|0;AS_VarDP=0|24|0;DP=24;QUALapprox=783;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:783,0,783:0,0,18,6 +chrX 4508724 . A . . END=4510501 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,487 +chrX 4510502 . AAT A, 742.01 . AS_QUALapprox=|752|0;AS_VarDP=1|23|0;BaseQRankSum=-0.151;DP=26;MQRankSum=0.000;QUALapprox=752;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;ReadPosRankSum=0.867;VarDP=24 GT:AD:DP:GQ:PL:SB 1:1,23,0:24:99:752,0,786:1,0,14,9 +chrX 4510505 . A . . END=4511567 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,536 +chrX 4511568 . T TA, 725.01 . AS_QUALapprox=|735|0;AS_VarDP=0|32|0;DP=36;QUALapprox=735;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129600,36;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:735,0,735:0,0,17,15 +chrX 4511569 . A . . END=4511820 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,914 +chrX 4511821 . G A, 1362.04 . AS_QUALapprox=|1372|0;AS_VarDP=0|42|0;DP=45;QUALapprox=1372;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162000,45;VarDP=42 GT:AD:DP:GQ:PL:SB 1:0,42,0:42:99:1372,0,1372:0,0,22,20 +chrX 4511822 . A . . END=4513343 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,579 +chrX 4513344 . AAAAAG A, 349.01 . AS_QUALapprox=|359|0;AS_VarDP=1|14|0;BaseQRankSum=-0.452;DP=33;MQRankSum=0.000;QUALapprox=359;RAW_GT_COUNT=0,0,1;RAW_MQandDP=116449,33;ReadPosRankSum=-1.507;VarDP=15 GT:AD:DP:GQ:PL:SB 1:1,14,0:15:99:359,0,369:0,1,5,9 +chrX 4513350 . A . . END=4514072 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,496 +chrX 4514073 . G GAAGA, 779.01 . AS_QUALapprox=|789|0;AS_VarDP=0|18|0;DP=23;QUALapprox=789;RAW_GT_COUNT=0,0,1;RAW_MQandDP=80698,23;VarDP=18 GT:AD:DP:GQ:PL:SB 1:0,18,0:18:99:789,0,789:0,0,12,6 +chrX 4514074 . A . . END=4514092 GT:DP:GQ:MIN_DP:PL 0:20:99:20:0,540 +chrX 4514093 . G GAAGA, 564.01 . AS_QUALapprox=|574|0;AS_VarDP=0|13|0;DP=22;QUALapprox=574;RAW_GT_COUNT=0,0,1;RAW_MQandDP=77098,22;VarDP=13 GT:AD:DP:GQ:PL:SB 1:0,13,0:13:99:574,0,575:0,0,11,2 +chrX 4514094 . A . . END=4514220 GT:DP:GQ:MIN_DP:PL 0:19:99:19:0,286 +chrX 4514221 . G GAGGAAGGAAGGA, 485.01 . AS_QUALapprox=|495|0;AS_VarDP=0|11|0;DP=14;QUALapprox=495;RAW_GT_COUNT=0,0,1;RAW_MQandDP=48400,14;VarDP=11 GT:AD:DP:GQ:PL:SB 1:0,11,0:11:99:495,0,495:0,0,6,5 +chrX 4514222 . A . . END=4516997 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,270 +chrX 4516998 . GCACA G, 730.01 . AS_QUALapprox=|740|0;AS_VarDP=1|18|0;DP=29;MQRankSum=0.000;QUALapprox=740;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=19 GT:AD:DP:GQ:PL:SB 1:1,18,0:19:99:740,0,784:0,1,7,11 +chrX 4517003 . C . . END=4518587 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,491 +chrX 4518588 . G A, 1051.04 . AS_QUALapprox=|1061|0;AS_VarDP=0|32|0;DP=33;QUALapprox=1061;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1061,0,1061:0,0,17,15 +chrX 4518589 . T . . END=4521355 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,536 +chrX 4521356 . AAGATAGATAGAT A, 571.01 . AS_QUALapprox=|581|0;AS_VarDP=1|18|0;BaseQRankSum=0.000;DP=24;MQRankSum=0.000;QUALapprox=581;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;ReadPosRankSum=-0.730;VarDP=19 GT:AD:DP:GQ:PL:SB 1:1,18,0:19:99:581,0,590:1,0,10,8 +chrX 4521369 . A . . END=4522090 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,482 +chrX 4522091 . TATAG T, 780.01 . AS_QUALapprox=|790|0;AS_VarDP=0|18|0;DP=30;QUALapprox=790;RAW_GT_COUNT=0,0,1;RAW_MQandDP=107425,30;VarDP=18 GT:AD:DP:GQ:PL:SB 1:0,18,0:18:99:790,0,790:0,0,8,10 +chrX 4522096 . A . . END=4528447 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,342 +chrX 4528448 . A G, 992.04 . AS_QUALapprox=|1002|0;AS_VarDP=0|30|0;DP=31;QUALapprox=1002;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:1002,0,1002:0,0,16,14 +chrX 4528449 . T . . END=4529078 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,884 +chrX 4529079 . C G, 868.04 . AS_QUALapprox=|878|0;AS_VarDP=1|28|0;BaseQRankSum=-0.426;DP=30;MQRankSum=0.000;QUALapprox=878;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;ReadPosRankSum=-1.376;VarDP=29 GT:AD:DP:GQ:PL:SB 1:1,28,0:29:99:878,0,913:0,1,17,11 +chrX 4529080 . T . . END=4531213 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,550 +chrX 4531214 . C A, 888.04 . AS_QUALapprox=|898|0;AS_VarDP=0|27|0;DP=27;QUALapprox=898;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:898,0,898:0,0,13,14 +chrX 4531215 . T . . END=4532767 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,620 +chrX 4532768 . ATTT A, 750.01 . AS_QUALapprox=|760|0;AS_VarDP=1|19|0;BaseQRankSum=-0.457;DP=27;MQRankSum=0.000;QUALapprox=760;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;ReadPosRankSum=1.561;VarDP=20 GT:AD:DP:GQ:PL:SB 1:1,19,0:20:99:760,0,781:1,0,9,10 +chrX 4532772 . T . . END=4533548 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,462 +chrX 4533549 . T TACACAC, 1034.01 . AS_QUALapprox=|1044|0;AS_VarDP=0|24|0;DP=27;QUALapprox=1044;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:1044,0,1044:0,0,14,10 +chrX 4533550 . A . . END=4534360 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,545 +chrX 4534361 . T TAATA, 1218.01 . AS_QUALapprox=|1228|0;AS_VarDP=0|28|0;DP=30;QUALapprox=1228;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:1228,0,1228:0,0,15,13 +chrX 4534362 . A . . END=4534630 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,679 +chrX 4534631 . C T, 883.04 . AS_QUALapprox=|893|0;AS_VarDP=0|26|0;DP=26;QUALapprox=893;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:893,0,893:0,0,15,11 +chrX 4534632 . A . . END=4538185 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,313 +chrX 4538186 . C T, 1013.04 . AS_QUALapprox=|1023|0;AS_VarDP=2|32|0;BaseQRankSum=1.897;DP=34;MQRankSum=0.000;QUALapprox=1023;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;ReadPosRankSum=0.256;VarDP=34 GT:AD:DP:GQ:PL:SB 1:2,32,0:34:99:1023,0,1067:2,0,14,18 +chrX 4538187 . G . . END=4540478 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,472 +chrX 4540479 . C T, 809.04 . AS_QUALapprox=|819|0;AS_VarDP=0|25|0;DP=25;QUALapprox=819;RAW_GT_COUNT=0,0,1;RAW_MQandDP=89316,25;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:819,0,819:0,0,14,11 +chrX 4540480 . G . . END=4540843 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,566 +chrX 4540844 . T C, 807.04 . AS_QUALapprox=|817|0;AS_VarDP=1|28|0;BaseQRankSum=-0.478;DP=30;MQRankSum=2.450;QUALapprox=817;RAW_GT_COUNT=0,0,1;RAW_MQandDP=55515,30;ReadPosRankSum=-0.179;VarDP=29 GT:AD:DP:GQ:PL:SB 1:1,28,0:29:99:817,0,842:0,1,12,16 +chrX 4540845 . A . . END=4541978 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,511 +chrX 4541979 . A C, 1149.04 . AS_QUALapprox=|1159|0;AS_VarDP=0|26|0;DP=26;QUALapprox=1159;RAW_GT_COUNT=0,0,1;RAW_MQandDP=59211,26;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:1159,0,1159:0,0,15,11 +chrX 4541980 . T . . END=4541981 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,829 +chrX 4541982 . A G, 1115.04 . AS_QUALapprox=|1125|0;AS_VarDP=0|25|0;DP=25;QUALapprox=1125;RAW_GT_COUNT=0,0,1;RAW_MQandDP=55611,25;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:1125,0,1125:0,0,15,10 +chrX 4541983 . G . . END=4541984 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,834 +chrX 4541985 . G A, 1115.04 . AS_QUALapprox=|1125|0;AS_VarDP=0|25|0;DP=25;QUALapprox=1125;RAW_GT_COUNT=0,0,1;RAW_MQandDP=55611,25;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:1125,0,1125:0,0,15,10 +chrX 4541986 . C . . END=4542166 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,507 +chrX 4542167 . T C, 659.04 . AS_QUALapprox=|669|0;AS_VarDP=0|22|0;DP=23;QUALapprox=669;RAW_GT_COUNT=0,0,1;RAW_MQandDP=45651,23;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:669,0,669:0,0,10,12 +chrX 4542168 . G . . END=4542554 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,536 +chrX 4542555 . C T, 1084.04 . AS_QUALapprox=|1094|0;AS_VarDP=0|25|0;DP=25;QUALapprox=1094;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86026,25;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:1094,0,1094:0,0,14,11 +chrX 4542556 . A . . END=4542564 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,790 +chrX 4542565 . G C, 1144.04 . AS_QUALapprox=|1154|0;AS_VarDP=0|27|0;DP=27;QUALapprox=1154;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93226,27;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:1154,0,1154:0,0,14,13 +chrX 4542566 . G . . END=4543023 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,784 +chrX 4543024 . C T, 969.04 . AS_QUALapprox=|979|0;AS_VarDP=0|30|0;DP=30;QUALapprox=979;RAW_GT_COUNT=0,0,1;RAW_MQandDP=41490,30;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:979,0,979:0,0,16,14 +chrX 4543025 . G . . END=4543202 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,749 +chrX 4543203 . T C, 1174.04 . AS_QUALapprox=|1184|0;AS_VarDP=0|27|0;DP=28;QUALapprox=1184;RAW_GT_COUNT=0,0,1;RAW_MQandDP=54506,28;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:1184,0,1184:0,0,12,15 +chrX 4543204 . A . . END=4543221 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,759 +chrX 4543222 . G A, 1250.04 . AS_QUALapprox=|1260|0;AS_VarDP=0|28|0;DP=28;QUALapprox=1260;RAW_GT_COUNT=0,0,1;RAW_MQandDP=47650,28;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:1260,0,1260:0,0,15,13 +chrX 4543223 . G . . END=4543230 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,878 +chrX 4543231 . T C, 1205.04 . AS_QUALapprox=|1215|0;AS_VarDP=0|27|0;DP=27;QUALapprox=1215;RAW_GT_COUNT=0,0,1;RAW_MQandDP=43792,27;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:1215,0,1215:0,0,15,12 +chrX 4543232 . G A, 1205.04 . AS_QUALapprox=|1215|0;AS_VarDP=0|27|0;DP=27;QUALapprox=1215;RAW_GT_COUNT=0,0,1;RAW_MQandDP=43792,27;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:1215,0,1215:0,0,15,12 +chrX 4543233 . T . . END=4543342 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,670 +chrX 4543343 . C T, 853.04 . AS_QUALapprox=|863|0;AS_VarDP=0|27|0;DP=27;QUALapprox=863;RAW_GT_COUNT=0,0,1;RAW_MQandDP=79527,27;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:863,0,863:0,0,11,16 +chrX 4543344 . A . . END=4543524 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,690 +chrX 4543525 . T C, 857.04 . AS_QUALapprox=|867|0;AS_VarDP=0|29|0;DP=29;QUALapprox=867;RAW_GT_COUNT=0,0,1;RAW_MQandDP=81912,29;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:867,0,867:0,0,14,15 +chrX 4543526 . A . . END=4543630 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,780 +chrX 4543631 . G T, 717.04 . AS_QUALapprox=|727|0;AS_VarDP=0|22|0;DP=24;QUALapprox=727;RAW_GT_COUNT=0,0,1;RAW_MQandDP=73742,24;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:727,0,727:0,0,10,12 +chrX 4543632 . A . . END=4544069 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,660 +chrX 4544070 . CT C, 519.01 . AS_QUALapprox=|529|0;AS_VarDP=0|19|0;DP=21;QUALapprox=529;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75600,21;VarDP=19 GT:AD:DP:GQ:PL:SB 1:0,19,0:19:99:529,0,529:0,0,9,10 +chrX 4544072 . T . . END=4544247 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,601 +chrX 4544248 . C T, 957.04 . AS_QUALapprox=|967|0;AS_VarDP=0|29|0;DP=30;QUALapprox=967;RAW_GT_COUNT=0,0,1;RAW_MQandDP=58453,30;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:967,0,967:0,0,15,14 +chrX 4544249 . G . . END=4544328 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,645 +chrX 4544329 . T G, 943.04 . AS_QUALapprox=|953|0;AS_VarDP=0|28|0;DP=28;QUALapprox=953;RAW_GT_COUNT=0,0,1;RAW_MQandDP=77091,28;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:953,0,953:0,0,12,16 +chrX 4544330 . T . . END=4546819 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,417 +chrX 4546820 . A AG, 1075.01 . AS_QUALapprox=|1085|0;AS_VarDP=0|28|0;DP=28;QUALapprox=1085;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:1085,0,1085:0,0,13,15 +chrX 4546821 . A . . END=4547947 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,372 +chrX 4547948 . C CA, 347.01 . AS_QUALapprox=|357|0;AS_VarDP=0|16|0;DP=18;QUALapprox=357;RAW_GT_COUNT=0,0,1;RAW_MQandDP=64800,18;VarDP=16 GT:AD:DP:GQ:PL:SB 1:0,16,0:16:99:357,0,357:0,0,11,5 +chrX 4547949 . A . . END=4548240 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,665 +chrX 4548241 . G C, 1345.04 . AS_QUALapprox=|1355|0;AS_VarDP=0|39|0;DP=40;QUALapprox=1355;RAW_GT_COUNT=0,0,1;RAW_MQandDP=144000,40;VarDP=39 GT:AD:DP:GQ:PL:SB 1:0,39,0:39:99:1355,0,1355:0,0,24,15 +chrX 4548242 . T . . END=4550814 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,416 +chrX 4550815 . A G, 998.04 . AS_QUALapprox=|1008|0;AS_VarDP=0|29|0;DP=30;QUALapprox=1008;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:1008,0,1008:0,0,15,14 +chrX 4550816 . C . . END=4551338 GT:DP:GQ:MIN_DP:PL 0:39:99:39:0,507 +chrX 4551339 . G GTATCTATC,GTATGTATGTATGTATCTATC, 1074.01 . AS_QUALapprox=|31|1084|0;AS_VarDP=0|0|18|0;DP=34;QUALapprox=1084;RAW_GT_COUNT=0,0,1;RAW_MQandDP=120400,34;VarDP=18 GT:AD:DP:GQ:PL:SB 2:0,0,18,0:18:99:1084,1053,0,1071:0,0,9,9 +chrX 4551340 . T . . END=4551756 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,442 +chrX 4551757 . A G, 1231.04 . AS_QUALapprox=|1241|0;AS_VarDP=0|38|0;DP=41;QUALapprox=1241;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147600,41;VarDP=38 GT:AD:DP:GQ:PL:SB 1:0,38,0:38:99:1241,0,1241:0,0,17,21 +chrX 4551758 . T . . END=4553133 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,606 +chrX 4553134 . C A, 854.04 . AS_QUALapprox=|864|0;AS_VarDP=1|27|0;BaseQRankSum=-0.306;DP=29;MQRankSum=0.000;QUALapprox=864;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;ReadPosRankSum=0.000;VarDP=28 GT:AD:DP:GQ:PL:SB 1:1,27,0:28:99:864,0,899:0,1,11,16 +chrX 4553135 . T . . END=4553986 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,614 +chrX 4553987 . A G, 1194.04 . AS_QUALapprox=|1204|0;AS_VarDP=0|37|0;DP=38;QUALapprox=1204;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;VarDP=37 GT:AD:DP:GQ:PL:SB 1:0,37,0:37:99:1204,0,1204:0,0,21,16 +chrX 4553988 . T . . END=4554492 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,546 +chrX 4554493 . G A, 1003.04 . AS_QUALapprox=|1013|0;AS_VarDP=0|30|0;DP=31;QUALapprox=1013;RAW_GT_COUNT=0,0,1;RAW_MQandDP=109296,31;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:1013,0,1013:0,0,15,15 +chrX 4554494 . T . . END=4555000 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,764 +chrX 4555001 . A T, 832.04 . AS_QUALapprox=|842|0;AS_VarDP=0|28|0;DP=29;QUALapprox=842;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:842,0,842:0,0,11,17 +chrX 4555002 . T . . END=4555021 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,695 +chrX 4555022 . G GA, 626.01 . AS_QUALapprox=|636|0;AS_VarDP=2|27|0;BaseQRankSum=2.871;DP=32;MQRankSum=-0.136;QUALapprox=636;RAW_GT_COUNT=0,0,1;RAW_MQandDP=113200,32;ReadPosRankSum=0.992;VarDP=29 GT:AD:DP:GQ:PL:SB 1:2,27,0:29:99:636,0,666:1,1,9,18 +chrX 4555023 . A . . END=4556082 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,738 +chrX 4556083 . G A, 1003.04 . AS_QUALapprox=|1013|0;AS_VarDP=0|30|0;DP=32;QUALapprox=1013;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:1013,0,1013:0,0,19,11 +chrX 4556084 . C . . END=4556166 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,802 +chrX 4556167 . GTTTGTT G, 929.01 . AS_QUALapprox=|939|0;AS_VarDP=0|21|0;DP=28;QUALapprox=939;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:939,0,939:0,0,9,12 +chrX 4556174 . T . . END=4557557 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,566 +chrX 4557558 . A G, 710.04 . AS_QUALapprox=|720|0;AS_VarDP=0|21|0;DP=21;QUALapprox=720;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75600,21;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:720,0,720:0,0,11,10 +chrX 4557559 . A . . END=4557711 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,651 +chrX 4557712 . A G, 724.04 . AS_QUALapprox=|734|0;AS_VarDP=0|23|0;DP=23;QUALapprox=734;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:734,0,734:0,0,11,12 +chrX 4557713 . C . . END=4557779 GT:DP:GQ:MIN_DP:PL 0:20:99:20:0,547 +chrX 4557780 . T C, 675.04 . AS_QUALapprox=|685|0;AS_VarDP=0|20|0;DP=21;QUALapprox=685;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75600,21;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:685,0,685:0,0,10,10 +chrX 4557781 . T . . END=4557887 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,606 +chrX 4557888 . G A, 956.04 . AS_QUALapprox=|966|0;AS_VarDP=0|31|0;DP=31;QUALapprox=966;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:966,0,966:0,0,14,17 +chrX 4557889 . T . . END=4558670 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,725 +chrX 4558671 . C G, 899.04 . AS_QUALapprox=|909|0;AS_VarDP=0|27|0;DP=28;QUALapprox=909;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:909,0,909:0,0,17,10 +chrX 4558672 . C . . END=4559205 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,694 +chrX 4559206 . T C, 1039.04 . AS_QUALapprox=|1049|0;AS_VarDP=1|35|0;BaseQRankSum=1.939;DP=36;MQRankSum=0.000;QUALapprox=1049;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129600,36;ReadPosRankSum=-0.867;VarDP=36 GT:AD:DP:GQ:PL:SB 1:1,35,0:36:99:1049,0,1058:1,0,19,16 +chrX 4559207 . C . . END=4559274 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,939 +chrX 4559275 . C T, 963.04 . AS_QUALapprox=|973|0;AS_VarDP=0|28|0;DP=28;QUALapprox=973;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:973,0,973:0,0,17,11 +chrX 4559276 . T . . END=4559371 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,654 +chrX 4559372 . C A, 874.04 . AS_QUALapprox=|884|0;AS_VarDP=0|26|0;DP=27;QUALapprox=884;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:884,0,884:0,0,18,8 +chrX 4559373 . A . . END=4560755 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,135 +chrX 4560756 . A AC, 969.01 . AS_QUALapprox=|979|0;AS_VarDP=1|23|0;BaseQRankSum=-0.151;DP=24;MQRankSum=0.000;QUALapprox=979;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;ReadPosRankSum=1.446;VarDP=24 GT:AD:DP:GQ:PL:SB 1:1,23,0:24:99:979,0,1004:1,0,14,9 +chrX 4560757 . A AC, 969.01 . AS_QUALapprox=|979|0;AS_VarDP=1|23|0;BaseQRankSum=2.772;DP=24;MQRankSum=0.000;QUALapprox=979;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;ReadPosRankSum=1.589;VarDP=24 GT:AD:DP:GQ:PL:SB 1:1,23,0:24:99:979,0,1004:1,0,14,9 +chrX 4560758 . A . . END=4562965 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,516 +chrX 4562966 . T A, 424.04 . AS_QUALapprox=|434|0;AS_VarDP=1|16|0;BaseQRankSum=-0.189;DP=19;MQRankSum=0.000;QUALapprox=434;RAW_GT_COUNT=0,0,1;RAW_MQandDP=68400,19;ReadPosRankSum=-0.651;VarDP=17 GT:AD:DP:GQ:PL:SB 1:1,16,0:17:99:434,0,512:1,0,7,8 +chrX 4562967 . T . . END=4563563 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,368 +chrX 4563564 . C CA, 367.01 . AS_QUALapprox=|377|0;AS_VarDP=0|20|0;DP=23;QUALapprox=377;RAW_GT_COUNT=0,0,1;RAW_MQandDP=78800,23;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:377,0,377:0,0,10,10 +chrX 4563565 . A . . END=4564394 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,734 +chrX 4564395 . A T, 1077.04 . AS_QUALapprox=|1087|0;AS_VarDP=0|33|0;DP=34;QUALapprox=1087;RAW_GT_COUNT=0,0,1;RAW_MQandDP=121401,34;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1087,0,1087:0,0,12,21 +chrX 4564396 . G . . END=4564624 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,540 +chrX 4564625 . A G, 878.04 . AS_QUALapprox=|888|0;AS_VarDP=0|27|0;DP=27;QUALapprox=888;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:888,0,888:0,0,18,9 +chrX 4564626 . T . . END=4565108 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,496 +chrX 4565109 . A G, 595.04 . AS_QUALapprox=|605|0;AS_VarDP=0|20|0;DP=20;QUALapprox=605;RAW_GT_COUNT=0,0,1;RAW_MQandDP=72000,20;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:605,0,605:0,0,7,13 +chrX 4565110 . C . . END=4565236 GT:DP:GQ:MIN_DP:PL 0:22:99:22:0,606 +chrX 4565237 . G T, 780.04 . AS_QUALapprox=|790|0;AS_VarDP=0|23|0;DP=24;QUALapprox=790;RAW_GT_COUNT=0,0,1;RAW_MQandDP=84161,24;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:790,0,790:0,0,15,8 +chrX 4565238 . T . . END=4566310 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,619 +chrX 4566311 . A G, 1018.04 . AS_QUALapprox=|1028|0;AS_VarDP=0|31|0;DP=32;QUALapprox=1028;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1028,0,1028:0,0,13,18 +chrX 4566312 . A . . END=4567271 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,416 +chrX 4567272 . T G, 908.04 . AS_QUALapprox=|918|0;AS_VarDP=0|28|0;DP=28;QUALapprox=918;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:918,0,918:0,0,15,13 +chrX 4567273 . C . . END=4567589 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,610 +chrX 4567590 . G T, 645.04 . AS_QUALapprox=|655|0;AS_VarDP=0|20|0;DP=21;QUALapprox=655;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75600,21;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:655,0,655:0,0,14,6 +chrX 4567591 . T . . END=4568028 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,522 +chrX 4568029 . G A, 673.04 . AS_QUALapprox=|683|0;AS_VarDP=0|21|0;DP=22;QUALapprox=683;RAW_GT_COUNT=0,0,1;RAW_MQandDP=79200,22;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:683,0,683:0,0,10,11 +chrX 4568030 . T . . END=4568071 GT:DP:GQ:MIN_DP:PL 0:21:99:21:0,600 +chrX 4568072 . C T, 729.04 . AS_QUALapprox=|739|0;AS_VarDP=0|22|0;DP=22;QUALapprox=739;RAW_GT_COUNT=0,0,1;RAW_MQandDP=79200,22;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:739,0,739:0,0,11,11 +chrX 4568073 . A . . END=4568782 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,591 +chrX 4568783 . C G, 799.04 . AS_QUALapprox=|809|0;AS_VarDP=0|25|0;DP=25;QUALapprox=809;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:809,0,809:0,0,11,14 +chrX 4568784 . A . . END=4569021 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,656 +chrX 4569022 . T G, 921.04 . AS_QUALapprox=|931|0;AS_VarDP=0|28|0;DP=28;QUALapprox=931;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:931,0,931:0,0,17,11 +chrX 4569023 . G . . END=4569467 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,630 +chrX 4569468 . G A, 1107.04 . AS_QUALapprox=|1117|0;AS_VarDP=0|33|0;DP=34;QUALapprox=1117;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1117,0,1117:0,0,19,14 +chrX 4569469 . T . . END=4569498 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,1038 +chrX 4569499 . A T, 1082.04 . AS_QUALapprox=|1092|0;AS_VarDP=0|32|0;DP=32;QUALapprox=1092;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1092,0,1092:0,0,18,14 +chrX 4569500 . T . . END=4569742 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,655 +chrX 4569743 . C A, 665.04 . AS_QUALapprox=|675|0;AS_VarDP=0|20|0;DP=20;QUALapprox=675;RAW_GT_COUNT=0,0,1;RAW_MQandDP=72000,20;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:675,0,675:0,0,11,9 +chrX 4569744 . T . . END=4570388 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,522 +chrX 4570389 . T C, 819.04 . AS_QUALapprox=|829|0;AS_VarDP=0|25|0;DP=25;QUALapprox=829;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:829,0,829:0,0,16,9 +chrX 4570390 . T . . END=4570598 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,769 +chrX 4570599 . T C, 943.04 . AS_QUALapprox=|953|0;AS_VarDP=0|28|0;DP=29;QUALapprox=953;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:953,0,953:0,0,12,16 +chrX 4570600 . C . . END=4571089 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,432 +chrX 4571090 . C T, 723.04 . AS_QUALapprox=|733|0;AS_VarDP=0|23|0;DP=26;QUALapprox=733;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:733,0,733:0,0,11,12 +chrX 4571091 . T . . END=4571213 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,645 +chrX 4571214 . GT G, 582.01 . AS_QUALapprox=|592|0;AS_VarDP=0|21|0;DP=24;QUALapprox=592;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:592,0,592:0,0,8,13 +chrX 4571216 . T . . END=4572812 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,542 +chrX 4572813 . T C, 1174.04 . AS_QUALapprox=|1184|0;AS_VarDP=0|27|0;DP=27;QUALapprox=1184;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:1184,0,1184:0,0,16,11 +chrX 4572814 . T . . END=4572820 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,844 +chrX 4572821 . A G, 1149.04 . AS_QUALapprox=|1159|0;AS_VarDP=0|27|0;DP=27;QUALapprox=1159;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:1159,0,1159:0,0,14,13 +chrX 4572822 . G . . END=4573629 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,421 +chrX 4573630 . C T, 1008.04 . AS_QUALapprox=|1018|0;AS_VarDP=0|31|0;DP=31;QUALapprox=1018;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1018,0,1018:0,0,11,20 +chrX 4573631 . G . . END=4574546 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,690 +chrX 4574547 . G A, 1201.04 . AS_QUALapprox=|1211|0;AS_VarDP=0|38|0;DP=38;QUALapprox=1211;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;VarDP=38 GT:AD:DP:GQ:PL:SB 1:0,38,0:38:99:1211,0,1211:0,0,20,18 +chrX 4574548 . C . . END=4576614 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,501 +chrX 4576615 . G A, 699.04 . AS_QUALapprox=|709|0;AS_VarDP=0|23|0;DP=24;QUALapprox=709;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:709,0,709:0,0,7,16 +chrX 4576616 . A . . END=4576963 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,640 +chrX 4576964 . T G, 738.04 . AS_QUALapprox=|748|0;AS_VarDP=0|23|0;DP=23;QUALapprox=748;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:748,0,748:0,0,12,11 +chrX 4576965 . C . . END=4577066 GT:DP:GQ:MIN_DP:PL 0:17:99:17:0,382 +chrX 4577067 . C A, 608.04 . AS_QUALapprox=|618|0;AS_VarDP=0|18|0;DP=18;QUALapprox=618;RAW_GT_COUNT=0,0,1;RAW_MQandDP=63136,18;VarDP=18 GT:AD:DP:GQ:PL:SB 1:0,18,0:18:99:618,0,618:0,0,7,11 +chrX 4577068 . C . . END=4577095 GT:DP:GQ:MIN_DP:PL 0:20:99:20:0,272 +chrX 4577096 . AAAATT A, 766.01 . AS_QUALapprox=|776|0;AS_VarDP=0|20|0;DP=21;QUALapprox=776;RAW_GT_COUNT=0,0,1;RAW_MQandDP=66937,21;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:776,0,777:0,0,8,12 +chrX 4577102 . A . . END=4578722 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,530 +chrX 4578723 . A G, 1036.04 . AS_QUALapprox=|1046|0;AS_VarDP=0|35|0;DP=36;QUALapprox=1046;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129600,36;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,35,0:35:99:1046,0,1046:0,0,15,20 +chrX 4578724 . G . . END=4579141 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,849 +chrX 4579142 . T A, 1030.04 . AS_QUALapprox=|1040|0;AS_VarDP=0|32|0;DP=33;QUALapprox=1040;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1040,0,1040:0,0,15,17 +chrX 4579143 . T . . END=4579352 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,665 +chrX 4579353 . T TAC, 709.01 . AS_QUALapprox=|719|0;AS_VarDP=1|22|0;BaseQRankSum=-0.352;DP=25;MQRankSum=0.000;QUALapprox=719;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;ReadPosRankSum=-0.075;VarDP=23 GT:AD:DP:GQ:PL:SB 1:1,22,0:23:99:719,0,756:0,1,10,12 +chrX 4579354 . A . . END=4579982 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,730 +chrX 4579983 . G A, 735.04 . AS_QUALapprox=|745|0;AS_VarDP=0|22|0;DP=23;QUALapprox=745;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:745,0,745:0,0,13,9 +chrX 4579984 . A . . END=4580213 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,675 +chrX 4580214 . A T, 1316.04 . AS_QUALapprox=|1326|0;AS_VarDP=0|41|0;DP=42;QUALapprox=1326;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151200,42;VarDP=41 GT:AD:DP:GQ:PL:SB 1:0,41,0:41:99:1326,0,1326:0,0,20,21 +chrX 4580215 . T . . END=4580414 GT:DP:GQ:MIN_DP:PL 0:45:99:45:0,987 +chrX 4580415 . ATT A, 901.01 . AS_QUALapprox=|911|0;AS_VarDP=0|24|0;DP=29;QUALapprox=911;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:911,0,911:0,0,13,11 +chrX 4580418 . T . . END=4580804 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,664 +chrX 4580805 . T A, 958.04 . AS_QUALapprox=|968|0;AS_VarDP=0|29|0;DP=29;QUALapprox=968;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:968,0,968:0,0,13,16 +chrX 4580806 . C . . END=4581089 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,641 +chrX 4581090 . G T, 861.04 . AS_QUALapprox=|871|0;AS_VarDP=0|26|0;DP=26;QUALapprox=871;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:871,0,871:0,0,15,11 +chrX 4581091 . T . . END=4582002 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,270 +chrX 4582003 . CAAAAAAAAAAAA C, 104.01 . AS_QUALapprox=|114|0;AS_VarDP=3|5|0;DP=23;MQRankSum=0.000;QUALapprox=114;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82116,23;VarDP=8 GT:AD:DP:GQ:PL:SB 1:3,5,0:8:99:114,0,198:0,3,3,2 +chrX 4582016 . A . . END=4582487 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,651 +chrX 4582488 . C T, 1042.04 . AS_QUALapprox=|1052|0;AS_VarDP=0|32|0;DP=34;QUALapprox=1052;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1052,0,1052:0,0,17,15 +chrX 4582489 . A . . END=4582754 GT:DP:GQ:MIN_DP:PL 0:38:99:38:0,814 +chrX 4582755 . G GTGTA, 1070.01 . AS_QUALapprox=|1080|0;AS_VarDP=0|24|0;DP=26;QUALapprox=1080;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:1080,0,1080:0,0,9,15 +chrX 4582756 . T . . END=4582776 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,719 +chrX 4582777 . G A, 1004.04 . AS_QUALapprox=|1014|0;AS_VarDP=0|23|0;DP=24;QUALapprox=1014;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:1014,0,1014:0,0,8,15 +chrX 4582778 . T . . END=4583561 GT:DP:GQ:MIN_DP:PL 0:22:99:22:0,293 +chrX 4583562 . G C, 790.04 . AS_QUALapprox=|800|0;AS_VarDP=0|23|0;DP=23;QUALapprox=800;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:800,0,800:0,0,13,10 +chrX 4583563 . C . . END=4584370 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,626 +chrX 4584371 . G A, 1033.04 . AS_QUALapprox=|1043|0;AS_VarDP=0|30|0;DP=31;QUALapprox=1043;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:1043,0,1043:0,0,15,15 +chrX 4584372 . T . . END=4584855 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,585 +chrX 4584856 . A G, 838.04 . AS_QUALapprox=|848|0;AS_VarDP=2|28|0;BaseQRankSum=2.320;DP=30;MQRankSum=0.000;QUALapprox=848;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;ReadPosRankSum=0.624;VarDP=30 GT:AD:DP:GQ:PL:SB 1:2,28,0:30:99:848,0,897:1,1,15,13 +chrX 4584857 . G . . END=4585207 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,729 +chrX 4585208 . A G, 689.04 . AS_QUALapprox=|699|0;AS_VarDP=0|22|0;DP=26;QUALapprox=699;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93025,26;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:699,0,699:0,0,10,12 +chrX 4585209 . T . . END=4585443 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,311 +chrX 4585444 . G A,GAAAAA, 779.01 . AS_QUALapprox=|448|789|0;AS_VarDP=0|4|11|0;DP=27;QUALapprox=789;RAW_GT_COUNT=0,0,1;RAW_MQandDP=91785,27;VarDP=15 GT:AD:DP:GQ:PL:SB 2:0,4,11,0:15:99:789,341,0,622:0,0,6,9 +chrX 4585445 . A . . END=4585637 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,759 +chrX 4585638 . T C, 764.04 . AS_QUALapprox=|774|0;AS_VarDP=0|24|0;DP=26;QUALapprox=774;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:774,0,774:0,0,15,9 +chrX 4585639 . G . . END=4585796 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,688 +chrX 4585797 . A G, 918.04 . AS_QUALapprox=|928|0;AS_VarDP=0|29|0;DP=29;QUALapprox=928;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:928,0,928:0,0,14,15 +chrX 4585798 . A . . END=4585913 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,745 +chrX 4585914 . G GGGA, 1327.01 . AS_QUALapprox=|1337|0;AS_VarDP=0|30|0;DP=32;QUALapprox=1337;RAW_GT_COUNT=0,0,1;RAW_MQandDP=114625,32;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:1337,0,1337:0,0,15,15 +chrX 4585915 . G . . END=4585951 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,864 +chrX 4585952 . A C, 1018.04 . AS_QUALapprox=|1028|0;AS_VarDP=0|31|0;DP=35;QUALapprox=1028;RAW_GT_COUNT=0,0,1;RAW_MQandDP=124226,35;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1028,0,1028:0,0,16,15 +chrX 4585953 . A . . END=4586066 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,671 +chrX 4586067 . G A, 685.04 . AS_QUALapprox=|695|0;AS_VarDP=1|21|0;BaseQRankSum=0.000;DP=22;MQRankSum=0.000;QUALapprox=695;RAW_GT_COUNT=0,0,1;RAW_MQandDP=79200,22;ReadPosRankSum=0.237;VarDP=22 GT:AD:DP:GQ:PL:SB 1:1,21,0:22:99:695,0,730:0,1,12,9 +chrX 4586068 . A . . END=4586228 GT:DP:GQ:MIN_DP:PL 0:18:47:15:0,47 +chrX 4586229 . G C, 744.04 . AS_QUALapprox=|754|0;AS_VarDP=0|24|0;DP=27;QUALapprox=754;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:754,0,754:0,0,10,14 +chrX 4586230 . G . . END=4586765 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,501 +chrX 4586766 . T C, 883.04 . AS_QUALapprox=|893|0;AS_VarDP=0|29|0;DP=31;QUALapprox=893;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:893,0,893:0,0,13,16 +chrX 4586767 . T . . END=4586823 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,575 +chrX 4586824 . C CA, 469.01 . AS_QUALapprox=|479|0;AS_VarDP=0|21|0;DP=30;QUALapprox=479;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:479,0,479:0,0,9,12 +chrX 4586825 . A . . END=4586849 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,680 +chrX 4586850 . A G, 769.04 . AS_QUALapprox=|779|0;AS_VarDP=0|24|0;DP=26;QUALapprox=779;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:779,0,779:0,0,8,16 +chrX 4586851 . G . . END=4587462 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,650 +chrX 4587463 . C G, 927.04 . AS_QUALapprox=|937|0;AS_VarDP=0|30|0;DP=31;QUALapprox=937;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:937,0,937:0,0,14,16 +chrX 4587464 . T . . END=4587929 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,675 +chrX 4587930 . C CT, 366.01 . AS_QUALapprox=|376|0;AS_VarDP=1|16|0;BaseQRankSum=-0.196;DP=22;MQRankSum=0.000;QUALapprox=376;RAW_GT_COUNT=0,0,1;RAW_MQandDP=79200,22;ReadPosRankSum=0.921;VarDP=17 GT:AD:DP:GQ:PL:SB 1:1,16,0:17:99:376,0,390:1,0,4,12 +chrX 4587931 . T . . END=4587964 GT:DP:GQ:MIN_DP:PL 0:20:99:20:0,462 +chrX 4587965 . T A, 560.04 . AS_QUALapprox=|570|0;AS_VarDP=1|19|0;BaseQRankSum=1.514;DP=23;MQRankSum=0.000;QUALapprox=570;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;ReadPosRankSum=-1.389;VarDP=20 GT:AD:DP:GQ:PL:SB 1:1,19,0:20:99:570,0,595:0,1,8,11 +chrX 4587966 . C . . END=4588195 GT:DP:GQ:MIN_DP:PL 0:21:99:21:0,511 +chrX 4588196 . GTT G, 457.01 . AS_QUALapprox=|467|0;AS_VarDP=0|13|0;DP=19;QUALapprox=467;RAW_GT_COUNT=0,0,1;RAW_MQandDP=68400,19;VarDP=13 GT:AD:DP:GQ:PL:SB 1:0,13,0:13:99:467,0,467:0,0,8,5 +chrX 4588199 . T . . END=4588608 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,510 +chrX 4588609 . C T, 904.04 . AS_QUALapprox=|914|0;AS_VarDP=0|27|0;DP=28;QUALapprox=914;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:914,0,914:0,0,8,19 +chrX 4588610 . A . . END=4588749 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,809 +chrX 4588750 . A G, 829.04 . AS_QUALapprox=|839|0;AS_VarDP=0|26|0;DP=26;QUALapprox=839;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:839,0,839:0,0,13,13 +chrX 4588751 . G . . END=4589690 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,620 +chrX 4589691 . A G, 763.04 . AS_QUALapprox=|773|0;AS_VarDP=0|25|0;DP=28;QUALapprox=773;RAW_GT_COUNT=0,0,1;RAW_MQandDP=99049,28;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:773,0,773:0,0,14,11 +chrX 4589692 . C . . END=4589720 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,695 +chrX 4589721 . C T, 878.04 . AS_QUALapprox=|888|0;AS_VarDP=0|27|0;DP=29;QUALapprox=888;RAW_GT_COUNT=0,0,1;RAW_MQandDP=102074,29;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:888,0,888:0,0,14,13 +chrX 4589722 . G . . END=4590175 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,755 +chrX 4590176 . C G, 1310.04 . AS_QUALapprox=|1320|0;AS_VarDP=1|41|0;BaseQRankSum=-0.383;DP=42;MQRankSum=0.000;QUALapprox=1320;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151200,42;ReadPosRankSum=0.083;VarDP=42 GT:AD:DP:GQ:PL:SB 1:1,41,0:42:99:1320,0,1355:0,1,25,16 +chrX 4590177 . A . . END=4590394 GT:DP:GQ:MIN_DP:PL 0:40:99:40:0,988 +chrX 4590395 . A G, 1008.04 . AS_QUALapprox=|1018|0;AS_VarDP=0|31|0;DP=32;QUALapprox=1018;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1018,0,1018:0,0,11,20 +chrX 4590396 . C . . END=4590490 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,954 +chrX 4590491 . T G, 919.04 . AS_QUALapprox=|929|0;AS_VarDP=0|27|0;DP=28;QUALapprox=929;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:929,0,929:0,0,13,14 +chrX 4590492 . T . . END=4590700 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,635 +chrX 4590701 . TA T, 750.01 . AS_QUALapprox=|760|0;AS_VarDP=0|27|0;DP=28;QUALapprox=760;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:760,0,760:0,0,9,18 +chrX 4590703 . A . . END=4591028 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,600 +chrX 4591029 . G C, 923.04 . AS_QUALapprox=|933|0;AS_VarDP=0|28|0;DP=30;QUALapprox=933;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:933,0,933:0,0,14,14 +chrX 4591030 . T . . END=4591961 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,684 +chrX 4591962 . C A, 992.04 . AS_QUALapprox=|1002|0;AS_VarDP=0|32|0;DP=33;QUALapprox=1002;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1002,0,1002:0,0,9,23 +chrX 4591963 . C . . END=4592371 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,710 +chrX 4592372 . T C, 844.04 . AS_QUALapprox=|854|0;AS_VarDP=0|26|0;DP=28;QUALapprox=854;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:854,0,854:0,0,10,16 +chrX 4592373 . G . . END=4592677 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,864 +chrX 4592678 . T C, 1546.04 . AS_QUALapprox=|1556|0;AS_VarDP=0|49|0;DP=49;QUALapprox=1556;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=49 GT:AD:DP:GQ:PL:SB 1:0,49,0:49:99:1556,0,1556:0,0,24,25 +chrX 4592679 . A . . END=4592695 GT:DP:GQ:MIN_DP:PL 0:48:99:48:0,1448 +chrX 4592696 . A G, 1613.04 . AS_QUALapprox=|1623|0;AS_VarDP=0|49|0;DP=51;QUALapprox=1623;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=49 GT:AD:DP:GQ:PL:SB 1:0,49,0:49:99:1623,0,1623:0,0,25,24 +chrX 4592697 . C . . END=4592851 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,913 +chrX 4592852 . A G, 938.04 . AS_QUALapprox=|948|0;AS_VarDP=0|29|0;DP=30;QUALapprox=948;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:948,0,948:0,0,17,12 +chrX 4592853 . T . . END=4593013 GT:DP:GQ:MIN_DP:PL 0:39:99:39:0,997 +chrX 4593014 . A AAT, 1643.01 . AS_QUALapprox=|1653|0;AS_VarDP=0|38|0;DP=40;QUALapprox=1653;RAW_GT_COUNT=0,0,1;RAW_MQandDP=144000,40;VarDP=38 GT:AD:DP:GQ:PL:SB 1:0,38,0:38:99:1653,0,1653:0,0,16,22 +chrX 4593015 . A . . END=4593873 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,640 +chrX 4593874 . CT C, 405.01 . AS_QUALapprox=|415|0;AS_VarDP=0|18|0;DP=29;QUALapprox=415;RAW_GT_COUNT=0,0,1;RAW_MQandDP=102929,29;VarDP=18 GT:AD:DP:GQ:PL:SB 1:0,18,0:18:99:415,0,415:0,0,10,8 +chrX 4593876 . T . . END=4593920 GT:DP:GQ:MIN_DP:PL 0:19:99:19:0,431 +chrX 4593921 . G T, 655.04 . AS_QUALapprox=|665|0;AS_VarDP=0|20|0;DP=20;QUALapprox=665;RAW_GT_COUNT=0,0,1;RAW_MQandDP=71425,20;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:665,0,665:0,0,12,8 +chrX 4593922 . G . . END=4594047 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,580 +chrX 4594048 . A G, 854.04 . AS_QUALapprox=|864|0;AS_VarDP=0|26|0;DP=27;QUALapprox=864;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:864,0,864:0,0,13,13 +chrX 4594049 . T . . END=4594245 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,696 +chrX 4594246 . T C, 724.04 . AS_QUALapprox=|734|0;AS_VarDP=0|22|0;DP=23;QUALapprox=734;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:734,0,734:0,0,13,9 +chrX 4594247 . G . . END=4594354 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,675 +chrX 4594355 . A G, 997.04 . AS_QUALapprox=|1007|0;AS_VarDP=0|32|0;DP=33;QUALapprox=1007;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1007,0,1007:0,0,17,15 +chrX 4594356 . A . . END=4595049 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,670 +chrX 4595050 . C A, 1052.04 . AS_QUALapprox=|1062|0;AS_VarDP=0|32|0;DP=35;QUALapprox=1062;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1062,0,1062:0,0,16,16 +chrX 4595051 . A . . END=4595901 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,571 +chrX 4595902 . A G, 592.04 . AS_QUALapprox=|602|0;AS_VarDP=0|18|0;DP=21;QUALapprox=602;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75600,21;VarDP=18 GT:AD:DP:GQ:PL:SB 1:0,18,0:18:99:602,0,602:0,0,8,10 +chrX 4595903 . G . . END=4596060 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,511 +chrX 4596061 . A AT, 798.01 . AS_QUALapprox=|808|0;AS_VarDP=0|32|0;DP=35;QUALapprox=808;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:808,0,808:0,0,19,13 +chrX 4596062 . T . . END=4596874 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,600 +chrX 4596875 . G A, 968.04 . AS_QUALapprox=|978|0;AS_VarDP=0|29|0;DP=30;QUALapprox=978;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:978,0,978:0,0,12,17 +chrX 4596876 . C . . END=4597310 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,800 +chrX 4597311 . A G, 997.04 . AS_QUALapprox=|1007|0;AS_VarDP=0|32|0;DP=33;QUALapprox=1007;RAW_GT_COUNT=0,0,1;RAW_MQandDP=117700,33;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1007,0,1007:0,0,16,16 +chrX 4597312 . T . . END=4597433 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,596 +chrX 4597434 . CA C, 508.01 . AS_QUALapprox=|518|0;AS_VarDP=1|20|0;DP=25;MQRankSum=0.000;QUALapprox=518;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=21 GT:AD:DP:GQ:PL:SB 1:1,20,0:21:99:518,0,542:0,1,8,12 +chrX 4597436 . A . . END=4597714 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,655 +chrX 4597715 . T G, 977.04 . AS_QUALapprox=|987|0;AS_VarDP=0|29|0;DP=31;QUALapprox=987;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:987,0,987:0,0,14,15 +chrX 4597716 . T . . END=4597773 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,988 +chrX 4597774 . T C, 1116.04 . AS_QUALapprox=|1126|0;AS_VarDP=0|36|0;DP=38;QUALapprox=1126;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;VarDP=36 GT:AD:DP:GQ:PL:SB 1:0,36,0:36:99:1126,0,1126:0,0,17,19 +chrX 4597775 . G . . END=4598044 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,594 +chrX 4598045 . CGTGTGT C, 890.01 . AS_QUALapprox=|900|0;AS_VarDP=0|20|0;DP=21;QUALapprox=900;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75600,21;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:900,0,900:0,0,11,9 +chrX 4598052 . G . . END=4598794 GT:DP:GQ:MIN_DP:PL 0:20:99:20:0,270 +chrX 4598795 . T C, 589.04 . AS_QUALapprox=|599|0;AS_VarDP=0|19|0;DP=20;QUALapprox=599;RAW_GT_COUNT=0,0,1;RAW_MQandDP=72000,20;VarDP=19 GT:AD:DP:GQ:PL:SB 1:0,19,0:19:99:599,0,599:0,0,11,8 +chrX 4598796 . A . . END=4599215 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,505 +chrX 4599216 . C T, 720.04 . AS_QUALapprox=|730|0;AS_VarDP=1|22|0;BaseQRankSum=0.000;DP=24;MQRankSum=0.000;QUALapprox=730;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;ReadPosRankSum=-0.980;VarDP=23 GT:AD:DP:GQ:PL:SB 1:1,22,0:23:99:730,0,765:1,0,11,11 +chrX 4599217 . G . . END=4599517 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,785 +chrX 4599518 . A G, 997.04 . AS_QUALapprox=|1007|0;AS_VarDP=0|32|0;DP=32;QUALapprox=1007;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1007,0,1007:0,0,19,13 +chrX 4599519 . T . . END=4600423 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,452 +chrX 4600424 . G A, 784.04 . AS_QUALapprox=|794|0;AS_VarDP=0|26|0;DP=28;QUALapprox=794;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:794,0,794:0,0,12,14 +chrX 4600425 . C . . END=4600792 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,784 +chrX 4600793 . A T, 909.04 . AS_QUALapprox=|919|0;AS_VarDP=0|27|0;DP=27;QUALapprox=919;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:919,0,919:0,0,12,15 +chrX 4600794 . C . . END=4601487 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,475 +chrX 4601488 . G A, 1137.04 . AS_QUALapprox=|1147|0;AS_VarDP=0|33|0;DP=33;QUALapprox=1147;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1147,0,1147:0,0,16,17 +chrX 4601489 . A . . END=4601646 GT:DP:GQ:MIN_DP:PL 0:38:99:38:0,1028 +chrX 4601647 . T C, 1106.04 . AS_QUALapprox=|1116|0;AS_VarDP=0|36|0;DP=36;QUALapprox=1116;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129600,36;VarDP=36 GT:AD:DP:GQ:PL:SB 1:0,36,0:36:99:1116,0,1116:0,0,16,20 +chrX 4601648 . G . . END=4602082 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,898 +chrX 4602083 . AT A, 1200.01 . AS_QUALapprox=|1210|0;AS_VarDP=1|28|0;BaseQRankSum=-0.423;DP=32;MQRankSum=0.000;QUALapprox=1210;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;ReadPosRankSum=1.196;VarDP=29 GT:AD:DP:GQ:PL:SB 1:1,28,0:29:99:1210,0,1233:1,0,14,14 +chrX 4602085 . T . . END=4602102 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,923 +chrX 4602103 . C T, 1325.04 . AS_QUALapprox=|1335|0;AS_VarDP=0|31|0;DP=31;QUALapprox=1335;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1335,0,1335:0,0,16,15 +chrX 4602104 . A . . END=4602909 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,477 +chrX 4602910 . T C, 683.04 . AS_QUALapprox=|693|0;AS_VarDP=0|22|0;DP=23;QUALapprox=693;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:693,0,693:0,0,11,11 +chrX 4602911 . T . . END=4602979 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,695 +chrX 4602980 . A T, 863.04 . AS_QUALapprox=|873|0;AS_VarDP=0|26|0;DP=27;QUALapprox=873;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:873,0,873:0,0,13,13 +chrX 4602981 . A . . END=4603037 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,790 +chrX 4603038 . C A, 943.04 . AS_QUALapprox=|953|0;AS_VarDP=0|29|0;DP=31;QUALapprox=953;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:953,0,953:0,0,19,10 +chrX 4603039 . T . . END=4603424 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,744 +chrX 4603425 . T C, 802.04 . AS_QUALapprox=|812|0;AS_VarDP=0|27|0;DP=28;QUALapprox=812;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:812,0,812:0,0,12,15 +chrX 4603426 . T . . END=4603766 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,550 +chrX 4603767 . A T, 1023.04 . AS_QUALapprox=|1033|0;AS_VarDP=0|30|0;DP=32;QUALapprox=1033;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:1033,0,1033:0,0,20,10 +chrX 4603768 . G . . END=4603995 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,913 +chrX 4603996 . T C, 992.04 . AS_QUALapprox=|1002|0;AS_VarDP=0|30|0;DP=34;QUALapprox=1002;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:1002,0,1002:0,0,17,13 +chrX 4603997 . C . . END=4604253 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,878 +chrX 4604254 . T C, 988.04 . AS_QUALapprox=|998|0;AS_VarDP=0|30|0;DP=31;QUALapprox=998;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:998,0,998:0,0,17,13 +chrX 4604255 . C . . END=4605112 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,610 +chrX 4605113 . T TTATC, 1655.01 . AS_QUALapprox=|1665|0;AS_VarDP=0|37|0;DP=40;QUALapprox=1665;RAW_GT_COUNT=0,0,1;RAW_MQandDP=141129,40;VarDP=37 GT:AD:DP:GQ:PL:SB 1:0,37,0:37:99:1665,0,1665:0,0,19,18 +chrX 4605114 . T . . END=4605636 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,768 +chrX 4605637 . G C, 757.04 . AS_QUALapprox=|767|0;AS_VarDP=1|27|0;BaseQRankSum=-0.784;DP=30;MQRankSum=0.000;QUALapprox=767;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;ReadPosRankSum=0.991;VarDP=28 GT:AD:DP:GQ:PL:SB 1:1,27,0:28:99:767,0,802:0,1,13,14 +chrX 4605638 . C . . END=4605658 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,799 +chrX 4605659 . A G, 729.04 . AS_QUALapprox=|739|0;AS_VarDP=0|23|0;DP=25;QUALapprox=739;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:739,0,739:0,0,12,11 +chrX 4605660 . T . . END=4605947 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,760 +chrX 4605948 . G A, 1037.04 . AS_QUALapprox=|1047|0;AS_VarDP=0|31|0;DP=31;QUALapprox=1047;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1047,0,1047:0,0,12,19 +chrX 4605949 . G . . END=4606286 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,338 +chrX 4606287 . CAAAAA C, 306.01 . AS_QUALapprox=|316|0;AS_VarDP=0|9|0;DP=21;QUALapprox=316;RAW_GT_COUNT=0,0,1;RAW_MQandDP=71600,21;VarDP=9 GT:AD:DP:GQ:PL:SB 1:0,9,0:9:99:316,0,316:0,0,5,4 +chrX 4606293 . A . . END=4606805 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,561 +chrX 4606806 . A T, 1021.04 . AS_QUALapprox=|1031|0;AS_VarDP=0|31|0;DP=31;QUALapprox=1031;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1031,0,1031:0,0,14,17 +chrX 4606807 . A . . END=4607629 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,561 +chrX 4607630 . A T, 916.04 . AS_QUALapprox=|926|0;AS_VarDP=0|29|0;DP=29;QUALapprox=926;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:926,0,926:0,0,17,12 +chrX 4607631 . G . . END=4608164 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,686 +chrX 4608165 . G A, 1012.04 . AS_QUALapprox=|1022|0;AS_VarDP=0|31|0;DP=33;QUALapprox=1022;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1022,0,1022:0,0,13,18 +chrX 4608166 . T . . END=4608483 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,853 +chrX 4608484 . T C, 927.04 . AS_QUALapprox=|937|0;AS_VarDP=0|30|0;DP=33;QUALapprox=937;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:937,0,937:0,0,13,17 +chrX 4608485 . G . . END=4608739 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,651 +chrX 4608740 . G A, 1037.04 . AS_QUALapprox=|1047|0;AS_VarDP=0|32|0;DP=33;QUALapprox=1047;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1047,0,1047:0,0,17,15 +chrX 4608741 . T . . END=4608846 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,640 +chrX 4608847 . ATACATATATTTGCTATTAGATAG A, 474.04 . AS_QUALapprox=|859|0;AS_VarDP=0|20|0;DP=23;QUALapprox=859;RAW_GT_COUNT=0,0,1;RAW_MQandDP=76731,23;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:859,0,652:0,0,13,7 +chrX 4608871 . C . . END=4608877 GT:DP:GQ:MIN_DP:PL 0:22:99:22:0,540 +chrX 4608878 . ACAAATATATTTGCTATTAGATAGCAAATATACAAATATATTTGCTATTAGATAGCAAATATACAAATATATTTGCTATTAGATAGCAAATATACAAATATGTTTGCTATTAGATAGCAAATATACAAATATGTTTGCTATTAGATAGCAAATATACAAATATG A, 348.01 . AS_QUALapprox=|358|0;AS_VarDP=0|18|0;DP=26;QUALapprox=358;RAW_GT_COUNT=0,0,1;RAW_MQandDP=87531,26;VarDP=18 GT:AD:DP:GQ:PL:SB 1:0,18,0:18:99:358,0,358:0,0,12,6 +chrX 4609042 . T . . END=4609192 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,338 +chrX 4609193 . TTATA T, 936.01 . AS_QUALapprox=|946|0;AS_VarDP=0|21|0;DP=28;QUALapprox=946;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:946,0,946:0,0,11,10 +chrX 4609198 . T . . END=4610109 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,477 +chrX 4610110 . CT C, 739.01 . AS_QUALapprox=|749|0;AS_VarDP=0|18|0;DP=19;QUALapprox=749;RAW_GT_COUNT=0,0,1;RAW_MQandDP=68049,19;VarDP=18 GT:AD:DP:GQ:PL:SB 1:0,18,0:18:99:749,0,749:0,0,9,9 +chrX 4610112 . T . . END=4610125 GT:DP:GQ:MIN_DP:PL 0:18:99:18:0,495 +chrX 4610126 . C CTT, 754.01 . AS_QUALapprox=|764|0;AS_VarDP=0|18|0;DP=18;QUALapprox=764;RAW_GT_COUNT=0,0,1;RAW_MQandDP=63153,18;VarDP=18 GT:AD:DP:GQ:PL:SB 1:0,18,0:18:99:764,0,764:0,0,9,9 +chrX 4610127 . T . . END=4610149 GT:DP:GQ:MIN_DP:PL 0:13:99:13:0,225 +chrX 4610150 . T TTC,TTCTTTC,TTCTTTCTTTCTTTCTTTC, 537.01 . AS_QUALapprox=|547|416|314|0;AS_VarDP=0|4|2|0|0;DP=13;QUALapprox=547;RAW_GT_COUNT=0,0,1;RAW_MQandDP=42129,13;VarDP=6 GT:AD:DP:GQ:PL:SB 1:0,4,2,0,0:6:99:547,0,131,233,287:0,0,2,4 +chrX 4610151 . T . . END=4610167 GT:DP:GQ:MIN_DP:PL 0:11:99:11:0,303 +chrX 4610168 . C T, 285.04 . AS_QUALapprox=|295|0;AS_VarDP=0|7|0;DP=13;QUALapprox=295;RAW_GT_COUNT=0,0,1;RAW_MQandDP=42129,13;VarDP=7 GT:AD:DP:GQ:PL:SB 1:0,7,0:7:99:295,0,296:0,0,3,4 +chrX 4610169 . T . . END=4610175 GT:DP:GQ:MIN_DP:PL 0:12:99:12:0,352 +chrX 4610176 . T TTC, 100.01 . AS_QUALapprox=|110|0;AS_VarDP=2|5|0;BaseQRankSum=0.566;DP=13;MQRankSum=0.967;QUALapprox=110;RAW_GT_COUNT=0,0,1;RAW_MQandDP=42480,13;ReadPosRankSum=-0.366;VarDP=7 GT:AD:DP:GQ:PL:SB 1:2,5,0:7:99:110,0,149:1,1,2,3 +chrX 4610177 . T . . END=4610177 GT:DP:GQ:MIN_DP:PL 0:13:99:13:0,432 +chrX 4610178 . GTCTCTC G,TTCTCTC,CTCTCTC, 419.04 . AS_QUALapprox=|67|429|194|0;AS_VarDP=0|0|5|2|0;DP=14;QUALapprox=429;RAW_GT_COUNT=0,0,1;RAW_MQandDP=43105,14;VarDP=7 GT:AD:DP:GQ:PL:SB 2:0,0,5,2,0:7:99:429,362,0,235,381:0,0,3,4 +chrX 4610184 . C *,CTTTCTTTG,CTCTTTCTTTG, 337.01 . AS_QUALapprox=|0|429|204|0;AS_VarDP=0|0|5|2|0;DP=13;QUALapprox=429;RAW_GT_COUNT=0,0,1;RAW_MQandDP=39505,13;VarDP=7 GT:AD:DP:GQ:PL:SB 2:0,0,5,2,0:7:99:429,317,0,225,372:0,0,3,4 +chrX 4610185 . T . . END=4619159 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,352 +chrX 4619160 . C T, 1120.04 . AS_QUALapprox=|1130|0;AS_VarDP=0|35|0;DP=35;QUALapprox=1130;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,35,0:35:99:1130,0,1130:0,0,14,21 +chrX 4619161 . A . . END=4620809 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,516 +chrX 4620810 . TA T, 824.01 . AS_QUALapprox=|834|0;AS_VarDP=0|21|0;DP=31;QUALapprox=834;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:834,0,834:0,0,11,10 +chrX 4620812 . A . . END=4620833 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,700 +chrX 4620834 . T C, 1005.04 . AS_QUALapprox=|1015|0;AS_VarDP=0|27|0;DP=28;QUALapprox=1015;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:1015,0,1015:0,0,15,12 +chrX 4620835 . G . . END=4626260 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,372 +chrX 4626261 . C CATATAT, 288.01 . AS_QUALapprox=|298|0;AS_VarDP=0|7|0;DP=11;QUALapprox=298;RAW_GT_COUNT=0,0,1;RAW_MQandDP=39600,11;VarDP=7 GT:AD:DP:GQ:PL:SB 1:0,7,0:7:99:298,0,299:0,0,5,2 +chrX 4626262 . A . . END=4633709 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,279 +chrX 4633710 . T C, 962.04 . AS_QUALapprox=|972|0;AS_VarDP=0|30|0;DP=31;QUALapprox=972;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:972,0,972:0,0,16,14 +chrX 4633711 . T . . END=4636134 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,510 +chrX 4636135 . T TTG, 850.01 . AS_QUALapprox=|860|0;AS_VarDP=0|25|0;DP=34;QUALapprox=860;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:860,0,860:0,0,10,15 +chrX 4636136 . T . . END=4637207 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,773 +chrX 4637208 . TAAAAG T, 1050.01 . AS_QUALapprox=|1060|0;AS_VarDP=1|25|0;BaseQRankSum=-0.389;DP=29;MQRankSum=0.000;QUALapprox=1060;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;ReadPosRankSum=-0.934;VarDP=26 GT:AD:DP:GQ:PL:SB 1:1,25,0:26:99:1060,0,1105:1,0,19,6 +chrX 4637214 . A . . END=4637829 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,710 +chrX 4637830 . C T, 831.04 . AS_QUALapprox=|841|0;AS_VarDP=0|26|0;DP=26;QUALapprox=841;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:841,0,841:0,0,11,15 +chrX 4637831 . T . . END=4639223 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,540 +chrX 4639224 . A G, 1211.04 . AS_QUALapprox=|1221|0;AS_VarDP=0|37|0;DP=39;QUALapprox=1221;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140400,39;VarDP=37 GT:AD:DP:GQ:PL:SB 1:0,37,0:37:99:1221,0,1221:0,0,17,20 +chrX 4639225 . C . . END=4642005 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,546 +chrX 4642006 . C CA, 183.01 . AS_QUALapprox=|193|0;AS_VarDP=0|13|0;DP=30;QUALapprox=193;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=13 GT:AD:DP:GQ:PL:SB 1:0,13,0:13:99:193,0,194:0,0,5,8 +chrX 4642007 . A . . END=4642918 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,491 +chrX 4642919 . T C, 610.04 . AS_QUALapprox=|620|0;AS_VarDP=0|20|0;DP=21;QUALapprox=620;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75600,21;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:620,0,620:0,0,10,10 +chrX 4642920 . G . . END=4650038 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,258 +chrX 4650039 . C CAA, 437.01 . AS_QUALapprox=|447|0;AS_VarDP=0|21|0;DP=28;QUALapprox=447;RAW_GT_COUNT=0,0,1;RAW_MQandDP=95463,28;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:447,0,447:0,0,12,9 +chrX 4650040 . A . . END=4650701 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,536 +chrX 4650702 . CTTTT C, 146.01 . AS_QUALapprox=|156|0;AS_VarDP=3|5|0;BaseQRankSum=-0.366;DP=19;MQRankSum=0.000;QUALapprox=156;RAW_GT_COUNT=0,0,1;RAW_MQandDP=68400,19;ReadPosRankSum=-0.180;VarDP=8 GT:AD:DP:GQ:PL:SB 1:3,5,0:8:99:156,0,226:2,1,2,3 +chrX 4650707 . T . . END=4650947 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,317 +chrX 4650948 . G A, 1007.04 . AS_QUALapprox=|1017|0;AS_VarDP=0|32|0;DP=32;QUALapprox=1017;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1017,0,1017:0,0,14,18 +chrX 4650949 . T . . END=4651797 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,661 +chrX 4651798 . T A,TA, 603.04 . AS_QUALapprox=|613|0|0;AS_VarDP=0|21|0|0;DP=24;QUALapprox=613;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0,0:21:99:613,0,696,655:0,0,9,12 +chrX 4651799 . A . . END=4653496 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,581 +chrX 4653497 . CTTTTTTTTTTTTTTTTTTTT C, 748.01 . AS_QUALapprox=|758|0;AS_VarDP=0|17|0;DP=24;QUALapprox=758;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=17 GT:AD:DP:GQ:PL:SB 1:0,17,0:17:99:758,0,758:0,0,11,6 +chrX 4653518 . T . . END=4654160 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,590 +chrX 4654161 . T A, 1395.04 . AS_QUALapprox=|1405|0;AS_VarDP=0|43|0;DP=43;QUALapprox=1405;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154800,43;VarDP=43 GT:AD:DP:GQ:PL:SB 1:0,43,0:43:99:1405,0,1405:0,0,14,29 +chrX 4654162 . G . . END=4654727 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,579 +chrX 4654728 . A T, 1363.04 . AS_QUALapprox=|1373|0;AS_VarDP=0|31|0;DP=32;QUALapprox=1373;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1373,0,1373:0,0,19,12 +chrX 4654729 . G . . END=4654737 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,1007 +chrX 4654738 . T C, 1398.04 . AS_QUALapprox=|1408|0;AS_VarDP=0|32|0;DP=32;QUALapprox=1408;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1408,0,1408:0,0,20,12 +chrX 4654739 . G . . END=4677148 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,219 +chrX 4677149 . A AAT, 207.01 . AS_QUALapprox=|217|0;AS_VarDP=0|8|0;DP=17;QUALapprox=217;RAW_GT_COUNT=0,0,1;RAW_MQandDP=57200,17;VarDP=8 GT:AD:DP:GQ:PL:SB 1:0,8,0:8:99:217,0,217:0,0,6,2 +chrX 4677150 . A . . END=4684112 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,180 +chrX 4684113 . TATATATAC T, 68.01 . AS_QUALapprox=|78|0;AS_VarDP=1|3|0;BaseQRankSum=0.000;DP=13;MQRankSum=0.000;QUALapprox=78;RAW_GT_COUNT=0,0,1;RAW_MQandDP=44800,13;ReadPosRankSum=0.319;VarDP=4 GT:AD:DP:GQ:PL:SB 1:1,3,0:4:78:78,0,104:0,1,2,1 +chrX 4684122 . A . . END=4691553 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,164 +chrX 4691554 . T C, 1069.04 . AS_QUALapprox=|1079|0;AS_VarDP=0|32|0;DP=33;QUALapprox=1079;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1079,0,1079:0,0,18,14 +chrX 4691555 . T . . END=4692198 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,540 +chrX 4692199 . T . . END=4692199 GT:DP:GQ:MIN_DP:PL 0:20:0:20:0,0 +chrX 4692200 . T . . END=4694733 GT:DP:GQ:MIN_DP:PL 0:28:90:28:0,90 +chrX 4694734 . C A, 1076.04 . AS_QUALapprox=|1086|0;AS_VarDP=0|35|0;DP=35;QUALapprox=1086;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,35,0:35:99:1086,0,1086:0,0,18,17 +chrX 4694735 . G . . END=4696130 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,477 +chrX 4696131 . ATG A, 255.01 . AS_QUALapprox=|265|0;AS_VarDP=0|8|0;DP=18;QUALapprox=265;RAW_GT_COUNT=0,0,1;RAW_MQandDP=64800,18;VarDP=8 GT:AD:DP:GQ:PL:SB 1:0,8,0:8:99:265,0,266:0,0,3,5 +chrX 4696134 . T . . END=4696162 GT:DP:GQ:MIN_DP:PL 0:16:99:16:0,233 +chrX 4696163 . GTATA G, 208.01 . AS_QUALapprox=|218|0;AS_VarDP=1|6|0;DP=14;MQRankSum=0.000;QUALapprox=218;RAW_GT_COUNT=0,0,1;RAW_MQandDP=50400,14;VarDP=7 GT:AD:DP:GQ:PL:SB 1:1,6,0:7:99:218,0,228:0,1,0,6 +chrX 4696168 . T . . END=4696970 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,446 +chrX 4696971 . A AT, 912.01 . AS_QUALapprox=|922|0;AS_VarDP=0|26|0;DP=28;QUALapprox=922;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:922,0,922:0,0,15,11 +chrX 4696972 . T . . END=4698387 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,581 +chrX 4698388 . T C, 843.04 . AS_QUALapprox=|853|0;AS_VarDP=2|29|0;BaseQRankSum=1.876;DP=31;MQRankSum=0.000;QUALapprox=853;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;ReadPosRankSum=0.040;VarDP=31 GT:AD:DP:GQ:PL:SB 1:2,29,0:31:99:853,0,903:1,1,13,16 +chrX 4698389 . G . . END=4698781 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,653 +chrX 4698782 . AT A, 676.01 . AS_QUALapprox=|686|0;AS_VarDP=0|22|0;DP=27;QUALapprox=686;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:686,0,686:0,0,13,9 +chrX 4698784 . T . . END=4699355 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,522 +chrX 4699356 . C CTG, 524.01 . AS_QUALapprox=|534|0;AS_VarDP=0|20|0;DP=21;QUALapprox=534;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75600,21;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:534,0,534:0,0,12,8 +chrX 4699357 . T . . END=4699614 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,564 +chrX 4699615 . A G, 943.04 . AS_QUALapprox=|953|0;AS_VarDP=0|28|0;DP=30;QUALapprox=953;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:953,0,953:0,0,17,11 +chrX 4699616 . T . . END=4700003 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,903 +chrX 4700004 . G A, 906.04 . AS_QUALapprox=|916|0;AS_VarDP=0|30|0;DP=31;QUALapprox=916;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:916,0,916:0,0,19,11 +chrX 4700005 . C . . END=4700153 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,551 +chrX 4700154 . C CA, 468.01 . AS_QUALapprox=|478|0;AS_VarDP=0|17|0;DP=19;QUALapprox=478;RAW_GT_COUNT=0,0,1;RAW_MQandDP=68400,19;VarDP=17 GT:AD:DP:GQ:PL:SB 1:0,17,0:17:99:478,0,478:0,0,8,9 +chrX 4700155 . A . . END=4700690 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,680 +chrX 4700691 . T C, 823.04 . AS_QUALapprox=|833|0;AS_VarDP=0|27|0;DP=27;QUALapprox=833;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:833,0,833:0,0,15,12 +chrX 4700692 . T . . END=4702130 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,759 +chrX 4702131 . T C, 967.04 . AS_QUALapprox=|977|0;AS_VarDP=0|31|0;DP=31;QUALapprox=977;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:977,0,977:0,0,13,18 +chrX 4702132 . A . . END=4702306 GT:DP:GQ:MIN_DP:PL 0:20:99:20:0,471 +chrX 4702307 . T TAGAG,TATAGAG, 850.01 . AS_QUALapprox=|327|860|0;AS_VarDP=0|0|15|0;DP=21;QUALapprox=860;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75600,21;VarDP=15 GT:AD:DP:GQ:PL:SB 2:0,0,15,0:15:99:860,533,0,697:0,0,7,8 +chrX 4702308 . A . . END=4703278 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,270 +chrX 4703279 . A ATTTT,ATTTTTTT, 664.01 . AS_QUALapprox=|674|590|0;AS_VarDP=0|5|5|0;DP=22;QUALapprox=674;RAW_GT_COUNT=0,0,1;RAW_MQandDP=71200,22;VarDP=10 GT:AD:DP:GQ:PL:SB 1:0,5,5,0:10:84:674,0,84,437:0,0,3,7 +chrX 4703280 . T . . END=4703286 GT:DP:GQ:MIN_DP:PL 0:19:99:19:0,405 +chrX 4703287 . A T, 779.04 . AS_QUALapprox=|789|0;AS_VarDP=0|18|0;DP=18;QUALapprox=789;RAW_GT_COUNT=0,0,1;RAW_MQandDP=56800,18;VarDP=18 GT:AD:DP:GQ:PL:SB 1:0,18,0:18:99:789,0,789:0,0,9,9 +chrX 4703288 . T . . END=4703301 GT:DP:GQ:MIN_DP:PL 0:21:99:21:0,270 +chrX 4703302 . G . . END=4703305 GT:DP:GQ:MIN_DP:PL 0:21:0:21:0,0 +chrX 4703306 . C . . END=4703408 GT:DP:GQ:MIN_DP:PL 0:16:99:16:0,139 +chrX 4703409 . G A, 465.04 . AS_QUALapprox=|475|0;AS_VarDP=0|14|0;DP=14;QUALapprox=475;RAW_GT_COUNT=0,0,1;RAW_MQandDP=12992,14;VarDP=14 GT:AD:DP:GQ:PL:SB 1:0,14,0:14:99:475,0,475:0,0,9,5 +chrX 4703410 . A . . END=4704073 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,417 +chrX 4704074 . T C, 609.04 . AS_QUALapprox=|619|0;AS_VarDP=0|22|0;DP=25;QUALapprox=619;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:619,0,619:0,0,11,11 +chrX 4704075 . G . . END=4704100 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,580 +chrX 4704101 . A C, 769.04 . AS_QUALapprox=|779|0;AS_VarDP=0|24|0;DP=25;QUALapprox=779;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:779,0,779:0,0,10,14 +chrX 4704102 . A . . END=4704147 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,729 +chrX 4704148 . AAT A, 907.01 . AS_QUALapprox=|917|0;AS_VarDP=0|23|0;DP=30;QUALapprox=917;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:917,0,917:0,0,12,11 +chrX 4704151 . A . . END=4704761 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,491 +chrX 4704762 . G GAT, 1131.01 . AS_QUALapprox=|1141|0;AS_VarDP=0|26|0;DP=27;QUALapprox=1141;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:1141,0,1142:0,0,10,16 +chrX 4704763 . A . . END=4705173 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,674 +chrX 4705174 . A AATAG, 1006.01 . AS_QUALapprox=|1016|0;AS_VarDP=0|23|0;DP=29;QUALapprox=1016;RAW_GT_COUNT=0,0,1;RAW_MQandDP=103825,29;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:1016,0,1016:0,0,17,6 +chrX 4705175 . A . . END=4705705 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,858 +chrX 4705706 . T TTAGA, 1678.01 . AS_QUALapprox=|1688|0;AS_VarDP=0|38|0;DP=45;QUALapprox=1688;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162000,45;VarDP=38 GT:AD:DP:GQ:PL:SB 1:0,38,0:38:99:1688,0,1689:0,0,26,12 +chrX 4705707 . T . . END=4708871 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,322 +chrX 4708872 . A T, 854.04 . AS_QUALapprox=|864|0;AS_VarDP=0|26|0;DP=26;QUALapprox=864;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:864,0,864:0,0,12,14 +chrX 4708873 . T . . END=4709689 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,770 +chrX 4709690 . T A, 902.04 . AS_QUALapprox=|912|0;AS_VarDP=0|29|0;DP=29;QUALapprox=912;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:912,0,912:0,0,20,9 +chrX 4709691 . A . . END=4709723 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,874 +chrX 4709724 . T C, 1076.04 . AS_QUALapprox=|1086|0;AS_VarDP=0|35|0;DP=37;QUALapprox=1086;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133200,37;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,35,0:35:99:1086,0,1086:0,0,22,13 +chrX 4709725 . G . . END=4709877 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,199 +chrX 4709878 . C CAAAA, 720.01 . AS_QUALapprox=|730|0;AS_VarDP=0|17|0;DP=21;QUALapprox=730;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75025,21;VarDP=17 GT:AD:DP:GQ:PL:SB 1:0,17,0:17:99:730,0,731:0,0,6,11 +chrX 4709879 . A . . END=4710416 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,411 +chrX 4710417 . C T, 550.04 . AS_QUALapprox=|560|0;AS_VarDP=0|18|0;DP=18;QUALapprox=560;RAW_GT_COUNT=0,0,1;RAW_MQandDP=64800,18;VarDP=18 GT:AD:DP:GQ:PL:SB 1:0,18,0:18:99:560,0,560:0,0,12,6 +chrX 4710418 . T . . END=4713212 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,486 +chrX 4713213 . C T, 766.04 . AS_QUALapprox=|776|0;AS_VarDP=0|24|0;DP=24;QUALapprox=776;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:776,0,776:0,0,14,10 +chrX 4713214 . T . . END=4713254 GT:DP:GQ:MIN_DP:PL 0:21:99:21:0,596 +chrX 4713255 . A C, 586.04 . AS_QUALapprox=|596|0;AS_VarDP=0|18|0;DP=19;QUALapprox=596;RAW_GT_COUNT=0,0,1;RAW_MQandDP=68400,19;VarDP=18 GT:AD:DP:GQ:PL:SB 1:0,18,0:18:99:596,0,596:0,0,11,7 +chrX 4713256 . A . . END=4713333 GT:DP:GQ:MIN_DP:PL 0:16:99:16:0,397 +chrX 4713334 . T TA, 273.01 . AS_QUALapprox=|283|0;AS_VarDP=1|14|0;BaseQRankSum=-0.346;DP=21;MQRankSum=0.000;QUALapprox=283;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75600,21;ReadPosRankSum=-0.231;VarDP=15 GT:AD:DP:GQ:PL:SB 1:1,14,0:15:99:283,0,293:1,0,4,10 +chrX 4713335 . A . . END=4713865 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,490 +chrX 4713866 . G A, 893.04 . AS_QUALapprox=|903|0;AS_VarDP=0|27|0;DP=28;QUALapprox=903;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:903,0,903:0,0,15,12 +chrX 4713867 . T . . END=4714031 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,854 +chrX 4714032 . T G, 804.04 . AS_QUALapprox=|814|0;AS_VarDP=0|24|0;DP=26;QUALapprox=814;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:814,0,814:0,0,11,13 +chrX 4714033 . T . . END=4714046 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,780 +chrX 4714047 . AAACTCC A, 1250.01 . AS_QUALapprox=|1260|0;AS_VarDP=0|28|0;DP=28;QUALapprox=1260;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:1260,0,1260:0,0,13,15 +chrX 4714054 . A . . END=4714330 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,625 +chrX 4714331 . A G, 989.04 . AS_QUALapprox=|999|0;AS_VarDP=0|33|0;DP=33;QUALapprox=999;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:999,0,999:0,0,21,12 +chrX 4714332 . G . . END=4714519 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,903 +chrX 4714520 . T C, 966.04 . AS_QUALapprox=|976|0;AS_VarDP=0|31|0;DP=31;QUALapprox=976;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:976,0,976:0,0,12,19 +chrX 4714521 . G . . END=4715165 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,700 +chrX 4715166 . G T, 1012.04 . AS_QUALapprox=|1022|0;AS_VarDP=0|31|0;DP=33;QUALapprox=1022;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1022,0,1022:0,0,12,19 +chrX 4715167 . T . . END=4715280 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,450 +chrX 4715281 . C T, 453.04 . AS_QUALapprox=|463|0;AS_VarDP=1|13|0;DP=21;MQRankSum=2.071;QUALapprox=463;RAW_GT_COUNT=0,0,1;RAW_MQandDP=67004,21;VarDP=14 GT:AD:DP:GQ:PL:SB 1:1,13,0:14:99:463,0,508:0,1,8,5 +chrX 4715282 . T . . END=4715295 GT:DP:GQ:MIN_DP:PL 0:12:99:12:0,303 +chrX 4715296 . C CCTCTCTCTCT, 435.01 . AS_QUALapprox=|445|0;AS_VarDP=1|12|0;BaseQRankSum=1.752;DP=23;MQRankSum=1.988;QUALapprox=445;RAW_GT_COUNT=0,0,1;RAW_MQandDP=74204,23;ReadPosRankSum=0.535;VarDP=13 GT:AD:DP:GQ:PL:SB 1:1,12,0:13:99:445,0,490:0,1,6,6 +chrX 4715297 . C . . END=4715593 GT:DP:GQ:MIN_DP:PL 0:21:99:21:0,362 +chrX 4715594 . C G, 1201.04 . AS_QUALapprox=|1211|0;AS_VarDP=0|37|0;DP=38;QUALapprox=1211;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;VarDP=37 GT:AD:DP:GQ:PL:SB 1:0,37,0:37:99:1211,0,1211:0,0,21,16 +chrX 4715595 . A . . END=4715672 GT:DP:GQ:MIN_DP:PL 0:40:99:40:0,1157 +chrX 4715673 . G T, 1121.04 . AS_QUALapprox=|1131|0;AS_VarDP=1|37|0;BaseQRankSum=1.496;DP=39;MQRankSum=0.000;QUALapprox=1131;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140400,39;ReadPosRankSum=1.734;VarDP=38 GT:AD:DP:GQ:PL:SB 1:1,37,0:38:99:1131,0,1156:1,0,16,21 +chrX 4715674 . G . . END=4715972 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,487 +chrX 4715973 . T C, 596.04 . AS_QUALapprox=|606|0;AS_VarDP=0|18|0;DP=18;QUALapprox=606;RAW_GT_COUNT=0,0,1;RAW_MQandDP=64800,18;VarDP=18 GT:AD:DP:GQ:PL:SB 1:0,18,0:18:99:606,0,606:0,0,10,8 +chrX 4715974 . T . . END=4716078 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,614 +chrX 4716079 . T C, 822.04 . AS_QUALapprox=|832|0;AS_VarDP=0|24|0;DP=25;QUALapprox=832;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:832,0,832:0,0,12,12 +chrX 4716080 . C . . END=4716559 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,789 +chrX 4716560 . T C, 972.04 . AS_QUALapprox=|982|0;AS_VarDP=0|31|0;DP=34;QUALapprox=982;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:982,0,982:0,0,12,19 +chrX 4716561 . G . . END=4721631 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,456 +chrX 4721632 . A G, 966.04 . AS_QUALapprox=|976|0;AS_VarDP=0|30|0;DP=30;QUALapprox=976;RAW_GT_COUNT=0,0,1;RAW_MQandDP=106000,30;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:976,0,976:0,0,17,13 +chrX 4721633 . T . . END=4723974 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,338 +chrX 4723975 . T C, 1077.04 . AS_QUALapprox=|1087|0;AS_VarDP=0|33|0;DP=33;QUALapprox=1087;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1087,0,1087:0,0,18,15 +chrX 4723976 . C . . END=4724378 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,620 +chrX 4724379 . A AC, 772.01 . AS_QUALapprox=|782|0;AS_VarDP=1|29|0;BaseQRankSum=-0.672;DP=33;MQRankSum=0.000;QUALapprox=782;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;ReadPosRankSum=0.289;VarDP=30 GT:AD:DP:GQ:PL:SB 1:1,29,0:30:99:782,0,811:1,0,13,16 +chrX 4724380 . C . . END=4724976 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,610 +chrX 4724977 . T C, 1046.04 . AS_QUALapprox=|1056|0;AS_VarDP=0|34|0;DP=34;QUALapprox=1056;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1056,0,1056:0,0,19,15 +chrX 4724978 . A . . END=4725059 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,933 +chrX 4725060 . A G, 1214.04 . AS_QUALapprox=|1224|0;AS_VarDP=0|38|0;DP=38;QUALapprox=1224;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;VarDP=38 GT:AD:DP:GQ:PL:SB 1:0,38,0:38:99:1224,0,1224:0,0,21,17 +chrX 4725061 . T . . END=4725102 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,997 +chrX 4725103 . A G, 1094.04 . AS_QUALapprox=|1104|0;AS_VarDP=0|36|0;DP=37;QUALapprox=1104;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133200,37;VarDP=36 GT:AD:DP:GQ:PL:SB 1:0,36,0:36:99:1104,0,1104:0,0,21,15 +chrX 4725104 . C . . END=4725262 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,794 +chrX 4725263 . A G, 941.04 . AS_QUALapprox=|951|0;AS_VarDP=0|29|0;DP=29;QUALapprox=951;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:951,0,951:0,0,16,13 +chrX 4725264 . T . . END=4725679 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,778 +chrX 4725680 . T C, 793.04 . AS_QUALapprox=|803|0;AS_VarDP=0|26|0;DP=29;QUALapprox=803;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:803,0,803:0,0,15,11 +chrX 4725681 . G . . END=4729920 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,522 +chrX 4729921 . G T, 866.04 . AS_QUALapprox=|876|0;AS_VarDP=1|30|0;BaseQRankSum=-0.784;DP=32;MQRankSum=0.000;QUALapprox=876;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;ReadPosRankSum=1.398;VarDP=31 GT:AD:DP:GQ:PL:SB 1:1,30,0:31:99:876,0,911:0,1,14,16 +chrX 4729922 . C . . END=4731429 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,506 +chrX 4731430 . G A, 730.04 . AS_QUALapprox=|740|0;AS_VarDP=0|22|0;DP=23;QUALapprox=740;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:740,0,740:0,0,10,12 +chrX 4731431 . C . . END=4734460 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,532 +chrX 4734461 . ATGTGTGTGTGTGTGTG A, 758.01 . AS_QUALapprox=|768|0;AS_VarDP=0|17|0;DP=28;QUALapprox=768;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=17 GT:AD:DP:GQ:PL:SB 1:0,17,0:17:99:768,0,768:0,0,7,10 +chrX 4734478 . T . . END=4738975 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,382 +chrX 4738976 . GA G, 1102.01 . AS_QUALapprox=|1112|0;AS_VarDP=0|34|0;DP=36;QUALapprox=1112;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129600,36;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1112,0,1112:0,0,12,22 +chrX 4738978 . A . . END=4739138 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,322 +chrX 4739139 . GCACA G, 575.01 . AS_QUALapprox=|585|0;AS_VarDP=0|13|0;DP=13;QUALapprox=585;RAW_GT_COUNT=0,0,1;RAW_MQandDP=46800,13;VarDP=13 GT:AD:DP:GQ:PL:SB 1:0,13,0:13:99:585,0,585:0,0,6,7 +chrX 4739144 . C . . END=4739144 GT:DP:GQ:MIN_DP:PL 0:12:99:12:0,387 +chrX 4739145 . A G, 575.04 . AS_QUALapprox=|585|0;AS_VarDP=0|13|0;DP=13;QUALapprox=585;RAW_GT_COUNT=0,0,1;RAW_MQandDP=46800,13;VarDP=13 GT:AD:DP:GQ:PL:SB 1:0,13,0:13:99:585,0,585:0,0,6,7 +chrX 4739146 . C . . END=4739146 GT:DP:GQ:MIN_DP:PL 0:13:99:13:0,422 +chrX 4739147 . A G, 575.04 . AS_QUALapprox=|585|0;AS_VarDP=0|13|0;DP=17;QUALapprox=585;RAW_GT_COUNT=0,0,1;RAW_MQandDP=61200,17;VarDP=13 GT:AD:DP:GQ:PL:SB 1:0,13,0:13:99:585,0,585:0,0,6,7 +chrX 4739148 . C . . END=4740456 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,427 +chrX 4740457 . T C, 957.04 . AS_QUALapprox=|967|0;AS_VarDP=0|32|0;DP=32;QUALapprox=967;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:967,0,967:0,0,18,14 +chrX 4740458 . G . . END=4742224 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,436 +chrX 4742225 . G C, 258.04 . AS_QUALapprox=|268|0;AS_VarDP=0|9|0;DP=10;QUALapprox=268;RAW_GT_COUNT=0,0,1;RAW_MQandDP=36000,10;VarDP=9 GT:AD:DP:GQ:PL:SB 1:0,9,0:9:99:268,0,268:0,0,4,5 +chrX 4742226 . T . . END=4742231 GT:DP:GQ:MIN_DP:PL 0:9:99:9:0,283 +chrX 4742232 . C CT, 13 . AS_QUALapprox=|23|0;AS_VarDP=1|3|0;BaseQRankSum=-0.319;DP=9;MQRankSum=0.000;QUALapprox=23;RAW_GT_COUNT=0,0,1;RAW_MQandDP=32400,9;ReadPosRankSum=-0.319;VarDP=4 GT:AD:DP:GQ:PL:SB 1:1,3,0:4:23:23,0,43:0,1,1,2 +chrX 4742233 . T . . END=4742428 GT:DP:GQ:MIN_DP:PL 0:22:99:22:0,360 +chrX 4742429 . A G, 713.04 . AS_QUALapprox=|723|0;AS_VarDP=0|25|0;DP=25;QUALapprox=723;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:723,0,723:0,0,15,10 +chrX 4742430 . G . . END=4745893 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,178 +chrX 4745894 . G A, 575.04 . AS_QUALapprox=|585|0;AS_VarDP=0|13|0;DP=13;QUALapprox=585;RAW_GT_COUNT=0,0,1;RAW_MQandDP=46800,13;VarDP=13 GT:AD:DP:GQ:PL:SB 1:0,13,0:13:99:585,0,585:0,0,5,8 +chrX 4745895 . A . . END=4745900 GT:DP:GQ:MIN_DP:PL 0:13:99:13:0,432 +chrX 4745901 . T TA, 575.01 . AS_QUALapprox=|585|0;AS_VarDP=0|13|0;DP=14;QUALapprox=585;RAW_GT_COUNT=0,0,1;RAW_MQandDP=50400,14;VarDP=13 GT:AD:DP:GQ:PL:SB 1:0,13,0:13:99:585,0,585:0,0,5,8 +chrX 4745902 . A . . END=4746915 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,418 +chrX 4746916 . GA G, 605.01 . AS_QUALapprox=|615|0;AS_VarDP=0|20|0;DP=21;QUALapprox=615;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75600,21;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:615,0,615:0,0,8,12 +chrX 4746918 . A . . END=4747367 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,600 +chrX 4747368 . G A, 1017.04 . AS_QUALapprox=|1027|0;AS_VarDP=0|32|0;DP=32;QUALapprox=1027;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1027,0,1027:0,0,19,13 +chrX 4747369 . T . . END=4750256 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,401 +chrX 4750257 . T TGAGA, 588.01 . AS_QUALapprox=|598|0;AS_VarDP=0|14|0;DP=18;QUALapprox=598;RAW_GT_COUNT=0,0,1;RAW_MQandDP=64225,18;VarDP=14 GT:AD:DP:GQ:PL:SB 1:0,14,0:14:99:598,0,598:0,0,5,9 +chrX 4750258 . G . . END=4750338 GT:DP:GQ:MIN_DP:PL 0:16:99:16:0,432 +chrX 4750339 . A ATT, 822.01 . AS_QUALapprox=|832|0;AS_VarDP=0|23|0;DP=24;QUALapprox=832;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:832,0,832:0,0,10,13 +chrX 4750340 . T . . END=4750407 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,729 +chrX 4750408 . C G, 888.04 . AS_QUALapprox=|898|0;AS_VarDP=0|27|0;DP=28;QUALapprox=898;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:898,0,898:0,0,13,14 +chrX 4750409 . T . . END=4751547 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,507 +chrX 4751548 . C G, 640.04 . AS_QUALapprox=|650|0;AS_VarDP=0|20|0;DP=21;QUALapprox=650;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75600,21;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:650,0,650:0,0,10,10 +chrX 4751549 . T . . END=4751951 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,641 +chrX 4751952 . G A, 904.04 . AS_QUALapprox=|914|0;AS_VarDP=0|29|0;DP=29;QUALapprox=914;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:914,0,914:0,0,15,14 +chrX 4751953 . T . . END=4752398 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,659 +chrX 4752399 . C CAT, 978.01 . AS_QUALapprox=|988|0;AS_VarDP=0|23|0;DP=24;QUALapprox=988;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:988,0,988:0,0,6,17 +chrX 4752400 . A . . END=4752502 GT:DP:GQ:MIN_DP:PL 0:20:99:20:0,516 +chrX 4752503 . GA G, 515.01 . AS_QUALapprox=|525|0;AS_VarDP=0|17|0;DP=18;QUALapprox=525;RAW_GT_COUNT=0,0,1;RAW_MQandDP=64800,18;VarDP=17 GT:AD:DP:GQ:PL:SB 1:0,17,0:17:99:525,0,525:0,0,9,8 +chrX 4752505 . A . . END=4752670 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,506 +chrX 4752671 . T C, 1106.04 . AS_QUALapprox=|1116|0;AS_VarDP=0|35|0;DP=36;QUALapprox=1116;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129600,36;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,35,0:35:99:1116,0,1116:0,0,19,16 +chrX 4752672 . A . . END=4753267 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,630 +chrX 4753268 . T C, 859.04 . AS_QUALapprox=|869|0;AS_VarDP=0|25|0;DP=26;QUALapprox=869;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:869,0,869:0,0,12,13 +chrX 4753269 . T . . END=4754204 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,442 +chrX 4754205 . TATAG T, 745.01 . AS_QUALapprox=|755|0;AS_VarDP=0|17|0;DP=19;QUALapprox=755;RAW_GT_COUNT=0,0,1;RAW_MQandDP=68400,19;VarDP=17 GT:AD:DP:GQ:PL:SB 1:0,17,0:17:99:755,0,755:0,0,12,5 +chrX 4754210 . A . . END=4756926 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,426 +chrX 4756927 . C CCT, 595.01 . AS_QUALapprox=|605|0;AS_VarDP=0|14|0;DP=15;QUALapprox=605;RAW_GT_COUNT=0,0,1;RAW_MQandDP=54000,15;VarDP=14 GT:AD:DP:GQ:PL:SB 1:0,14,0:14:99:605,0,605:0,0,3,11 +chrX 4756928 . C . . END=4757103 GT:DP:GQ:MIN_DP:PL 0:22:99:22:0,403 +chrX 4757104 . A G, 436.04 . AS_QUALapprox=|446|0;AS_VarDP=0|15|0;DP=16;QUALapprox=446;RAW_GT_COUNT=0,0,1;RAW_MQandDP=57600,16;VarDP=15 GT:AD:DP:GQ:PL:SB 1:0,15,0:15:99:446,0,446:0,0,4,11 +chrX 4757105 . T . . END=4757980 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,462 +chrX 4757981 . T C, 922.04 . AS_QUALapprox=|932|0;AS_VarDP=0|29|0;DP=30;QUALapprox=932;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:932,0,932:0,0,16,13 +chrX 4757982 . T . . END=4758473 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,804 +chrX 4758474 . A G, 892.04 . AS_QUALapprox=|902|0;AS_VarDP=0|29|0;DP=30;QUALapprox=902;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:902,0,902:0,0,10,19 +chrX 4758475 . T . . END=4758913 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,507 +chrX 4758914 . A C, 710.04 . AS_QUALapprox=|720|0;AS_VarDP=1|22|0;BaseQRankSum=2.834;DP=25;MQRankSum=0.000;QUALapprox=720;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;ReadPosRankSum=-0.830;VarDP=23 GT:AD:DP:GQ:PL:SB 1:1,22,0:23:99:720,0,730:0,1,9,13 +chrX 4758915 . A . . END=4759003 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,798 +chrX 4759004 . A T, 954.04 . AS_QUALapprox=|964|0;AS_VarDP=0|30|0;DP=33;QUALapprox=964;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:964,0,964:0,0,13,17 +chrX 4759005 . T . . END=4759956 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,590 +chrX 4759957 . C CTT, 525.01 . AS_QUALapprox=|535|0;AS_VarDP=0|18|0;DP=25;QUALapprox=535;RAW_GT_COUNT=0,0,1;RAW_MQandDP=88337,25;VarDP=18 GT:AD:DP:GQ:PL:SB 1:0,18,0:18:99:535,0,535:0,0,7,11 +chrX 4759958 . T . . END=4761855 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,467 +chrX 4761856 . G GGAGA, 1452.01 . AS_QUALapprox=|1462|0;AS_VarDP=0|33|0;DP=38;QUALapprox=1462;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1462,0,1462:0,0,15,18 +chrX 4761857 . G . . END=4766711 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,315 +chrX 4766712 . G . . END=4766712 GT:DP:GQ:MIN_DP:PL 0:26:0:26:0,0 +chrX 4766713 . A . . END=4772609 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,199 +chrX 4772610 . T G, 715.04 . AS_QUALapprox=|725|0;AS_VarDP=0|22|0;DP=22;QUALapprox=725;RAW_GT_COUNT=0,0,1;RAW_MQandDP=79200,22;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:725,0,725:0,0,11,11 +chrX 4772611 . T . . END=4773700 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,606 +chrX 4773701 . G A, 839.04 . AS_QUALapprox=|849|0;AS_VarDP=0|25|0;DP=26;QUALapprox=849;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:849,0,849:0,0,14,11 +chrX 4773702 . G . . END=4775154 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,135 +chrX 4775155 . G GAAAAA, 153.01 . AS_QUALapprox=|163|0;AS_VarDP=0|4|0;DP=10;QUALapprox=163;RAW_GT_COUNT=0,0,1;RAW_MQandDP=36000,10;VarDP=4 GT:AD:DP:GQ:PL:SB 1:0,4,0:4:99:163,0,163:0,0,3,1 +chrX 4775156 . A . . END=4775170 GT:DP:GQ:MIN_DP:PL 0:12:99:12:0,135 +chrX 4775171 . T . . END=4775171 GT:DP:GQ:MIN_DP:PL 0:10:0:10:0,0 +chrX 4775172 . A . . END=4775172 GT:DP:GQ:MIN_DP:PL 0:12:99:12:0,180 +chrX 4775173 . T . . END=4775173 GT:DP:GQ:MIN_DP:PL 0:10:0:10:0,0 +chrX 4775174 . A . . END=4776292 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,104 +chrX 4776293 . A AT, 1173.01 . AS_QUALapprox=|1183|0;AS_VarDP=0|33|0;DP=35;QUALapprox=1183;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1183,0,1183:0,0,14,19 +chrX 4776294 . T . . END=4776509 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,868 +chrX 4776510 . T C, 1229.04 . AS_QUALapprox=|1239|0;AS_VarDP=0|39|0;DP=42;QUALapprox=1239;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151200,42;VarDP=39 GT:AD:DP:GQ:PL:SB 1:0,39,0:39:99:1239,0,1239:0,0,20,19 +chrX 4776511 . A . . END=4777157 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,755 +chrX 4777158 . T G, 783.04 . AS_QUALapprox=|793|0;AS_VarDP=0|25|0;DP=26;QUALapprox=793;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:793,0,793:0,0,11,14 +chrX 4777159 . A . . END=4777178 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,759 +chrX 4777179 . G GAATA, 1295.01 . AS_QUALapprox=|1305|0;AS_VarDP=0|29|0;DP=30;QUALapprox=1305;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:1305,0,1305:0,0,15,14 +chrX 4777180 . A . . END=4777875 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,639 +chrX 4777876 . TTC T, 664.01 . AS_QUALapprox=|674|0;AS_VarDP=0|19|0;DP=25;QUALapprox=674;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=19 GT:AD:DP:GQ:PL:SB 1:0,19,0:19:99:674,0,674:0,0,8,11 +chrX 4777879 . T . . END=4778035 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,715 +chrX 4778036 . C CTTTTTTTT, 809.01 . AS_QUALapprox=|819|0;AS_VarDP=0|19|0;DP=23;QUALapprox=819;RAW_GT_COUNT=0,0,1;RAW_MQandDP=77201,23;VarDP=19 GT:AD:DP:GQ:PL:SB 1:0,19,0:19:99:819,0,820:0,0,10,9 +chrX 4778037 . T . . END=4778146 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,278 +chrX 4778147 . A C, 764.04 . AS_QUALapprox=|774|0;AS_VarDP=0|24|0;DP=26;QUALapprox=774;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:774,0,774:0,0,11,13 +chrX 4778148 . G . . END=4778603 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,586 +chrX 4778604 . GT G, 636.01 . AS_QUALapprox=|646|0;AS_VarDP=0|23|0;DP=26;QUALapprox=646;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:646,0,646:0,0,10,13 +chrX 4778606 . T . . END=4778763 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,614 +chrX 4778764 . T C, 906.04 . AS_QUALapprox=|916|0;AS_VarDP=0|21|0;DP=21;QUALapprox=916;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75600,21;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:916,0,916:0,0,10,11 +chrX 4778765 . T . . END=4778765 GT:DP:GQ:MIN_DP:PL 0:21:99:21:0,700 +chrX 4778766 . TTC T, 277.01 . AS_QUALapprox=|287|0;AS_VarDP=2|13|0;BaseQRankSum=-0.432;DP=21;MQRankSum=0.000;QUALapprox=287;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75600,21;ReadPosRankSum=-0.170;VarDP=15 GT:AD:DP:GQ:PL:SB 1:2,13,0:15:99:287,0,357:2,0,6,7 +chrX 4778769 . T . . END=4779093 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,347 +chrX 4779094 . C T, 634.04 . AS_QUALapprox=|644|0;AS_VarDP=0|20|0;DP=21;QUALapprox=644;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75600,21;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:644,0,644:0,0,11,9 +chrX 4779095 . T . . END=4779279 GT:DP:GQ:MIN_DP:PL 0:21:99:21:0,426 +chrX 4779280 . T A, 581.04 . AS_QUALapprox=|591|0;AS_VarDP=0|17|0;DP=20;QUALapprox=591;RAW_GT_COUNT=0,0,1;RAW_MQandDP=72000,20;VarDP=17 GT:AD:DP:GQ:PL:SB 1:0,17,0:17:99:591,0,591:0,0,7,10 +chrX 4779281 . C . . END=4779309 GT:DP:GQ:MIN_DP:PL 0:20:99:20:0,581 +chrX 4779310 . A C, 651.04 . AS_QUALapprox=|661|0;AS_VarDP=0|21|0;DP=21;QUALapprox=661;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75600,21;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:661,0,661:0,0,11,10 +chrX 4779311 . C . . END=4779387 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,634 +chrX 4779388 . T C, 824.04 . AS_QUALapprox=|834|0;AS_VarDP=0|26|0;DP=26;QUALapprox=834;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:834,0,834:0,0,17,9 +chrX 4779389 . G . . END=4779585 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,770 +chrX 4779586 . A C, 883.04 . AS_QUALapprox=|893|0;AS_VarDP=0|27|0;DP=27;QUALapprox=893;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:893,0,893:0,0,15,12 +chrX 4779587 . T . . END=4779615 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,691 +chrX 4779616 . A G, 855.04 . AS_QUALapprox=|865|0;AS_VarDP=0|27|0;DP=27;QUALapprox=865;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:865,0,865:0,0,15,12 +chrX 4779617 . A . . END=4779789 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,784 +chrX 4779790 . A T, 902.04 . AS_QUALapprox=|912|0;AS_VarDP=0|30|0;DP=31;QUALapprox=912;RAW_GT_COUNT=0,0,1;RAW_MQandDP=110025,31;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:912,0,912:0,0,10,20 +chrX 4779791 . A . . END=4779821 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,725 +chrX 4779822 . T C, 789.04 . AS_QUALapprox=|799|0;AS_VarDP=0|23|0;DP=24;QUALapprox=799;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:799,0,799:0,0,6,17 +chrX 4779823 . A . . END=4779967 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,665 +chrX 4779968 . C G, 854.04 . AS_QUALapprox=|864|0;AS_VarDP=1|27|0;BaseQRankSum=2.002;DP=29;MQRankSum=0.000;QUALapprox=864;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;ReadPosRankSum=-1.550;VarDP=28 GT:AD:DP:GQ:PL:SB 1:1,27,0:28:99:864,0,889:1,0,15,12 +chrX 4779969 . T . . END=4780026 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,823 +chrX 4780027 . T C, 818.04 . AS_QUALapprox=|828|0;AS_VarDP=1|26|0;BaseQRankSum=-0.313;DP=27;MQRankSum=0.000;QUALapprox=828;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;ReadPosRankSum=0.964;VarDP=27 GT:AD:DP:GQ:PL:SB 1:1,26,0:27:99:828,0,863:1,0,14,12 +chrX 4780028 . T . . END=4780055 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,704 +chrX 4780056 . G T, 735.04 . AS_QUALapprox=|745|0;AS_VarDP=0|22|0;DP=24;QUALapprox=745;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:745,0,745:0,0,13,9 +chrX 4780057 . T . . END=4780108 GT:DP:GQ:MIN_DP:PL 0:22:99:22:0,620 +chrX 4780109 . A G, 674.04 . AS_QUALapprox=|684|0;AS_VarDP=0|22|0;DP=23;QUALapprox=684;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:684,0,684:0,0,11,11 +chrX 4780110 . C . . END=4780324 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,620 +chrX 4780325 . C T, 722.04 . AS_QUALapprox=|732|0;AS_VarDP=0|22|0;DP=24;QUALapprox=732;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:732,0,732:0,0,12,10 +chrX 4780326 . T . . END=4780348 GT:DP:GQ:MIN_DP:PL 0:21:99:21:0,620 +chrX 4780349 . GTATA G, 885.01 . AS_QUALapprox=|895|0;AS_VarDP=0|21|0;DP=22;QUALapprox=895;RAW_GT_COUNT=0,0,1;RAW_MQandDP=79200,22;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:895,0,895:0,0,11,10 +chrX 4780354 . T . . END=4780354 GT:DP:GQ:MIN_DP:PL 0:21:99:21:0,710 +chrX 4780355 . GTA G, 885.01 . AS_QUALapprox=|895|0;AS_VarDP=0|21|0;DP=21;QUALapprox=895;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75600,21;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:895,0,895:0,0,11,10 +chrX 4780358 . T . . END=4780426 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,616 +chrX 4780427 . C T, 1173.04 . AS_QUALapprox=|1183|0;AS_VarDP=0|27|0;DP=29;QUALapprox=1183;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:1183,0,1183:0,0,8,19 +chrX 4780428 . G . . END=4780433 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,878 +chrX 4780434 . A G, 1208.04 . AS_QUALapprox=|1218|0;AS_VarDP=0|28|0;DP=30;QUALapprox=1218;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:1218,0,1218:0,0,9,19 +chrX 4780435 . G . . END=4780536 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,719 +chrX 4780537 . T G, 709.04 . AS_QUALapprox=|719|0;AS_VarDP=0|24|0;DP=26;QUALapprox=719;RAW_GT_COUNT=0,0,1;RAW_MQandDP=92116,26;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:719,0,719:0,0,13,11 +chrX 4780538 . T . . END=4780621 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,676 +chrX 4780622 . T C, 1086.04 . AS_QUALapprox=|1096|0;AS_VarDP=0|35|0;DP=35;QUALapprox=1096;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,35,0:35:99:1096,0,1096:0,0,21,14 +chrX 4780623 . G . . END=4781805 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,490 +chrX 4781806 . T G, 1463.04 . AS_QUALapprox=|1473|0;AS_VarDP=0|34|0;DP=36;QUALapprox=1473;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129600,36;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1473,0,1473:0,0,15,19 +chrX 4781807 . A . . END=4781822 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,1081 +chrX 4781823 . T C, 1537.04 . AS_QUALapprox=|1547|0;AS_VarDP=0|36|0;DP=36;QUALapprox=1547;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129600,36;VarDP=36 GT:AD:DP:GQ:PL:SB 1:0,36,0:36:99:1547,0,1547:0,0,16,20 +chrX 4781824 . A . . END=4782575 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,724 +chrX 4782576 . G A, 1069.04 . AS_QUALapprox=|1079|0;AS_VarDP=0|24|0;DP=24;QUALapprox=1079;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:1079,0,1079:0,0,7,17 +chrX 4782577 . A G, 1069.04 . AS_QUALapprox=|1079|0;AS_VarDP=0|24|0;DP=24;QUALapprox=1079;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:1079,0,1079:0,0,7,17 +chrX 4782578 . A . . END=4782929 GT:DP:GQ:MIN_DP:PL 0:20:99:20:0,452 +chrX 4782930 . A G, 596.04 . AS_QUALapprox=|606|0;AS_VarDP=0|18|0;DP=20;QUALapprox=606;RAW_GT_COUNT=0,0,1;RAW_MQandDP=72000,20;VarDP=18 GT:AD:DP:GQ:PL:SB 1:0,18,0:18:99:606,0,606:0,0,7,11 +chrX 4782931 . G . . END=4783100 GT:DP:GQ:MIN_DP:PL 0:18:99:18:0,348 +chrX 4783101 . A AGATG, 734.01 . AS_QUALapprox=|744|0;AS_VarDP=0|17|0;DP=17;QUALapprox=744;RAW_GT_COUNT=0,0,1;RAW_MQandDP=61200,17;VarDP=17 GT:AD:DP:GQ:PL:SB 1:0,17,0:17:99:744,0,744:0,0,10,7 +chrX 4783102 . G . . END=4783131 GT:DP:GQ:MIN_DP:PL 0:17:99:17:0,511 +chrX 4783132 . T C, 496.04 . AS_QUALapprox=|506|0;AS_VarDP=0|16|0;DP=17;QUALapprox=506;RAW_GT_COUNT=0,0,1;RAW_MQandDP=61200,17;VarDP=16 GT:AD:DP:GQ:PL:SB 1:0,16,0:16:99:506,0,506:0,0,8,8 +chrX 4783133 . G . . END=4783194 GT:DP:GQ:MIN_DP:PL 0:14:99:14:0,407 +chrX 4783195 . G A, 447.04 . AS_QUALapprox=|457|0;AS_VarDP=0|14|0;DP=16;QUALapprox=457;RAW_GT_COUNT=0,0,1;RAW_MQandDP=57600,16;VarDP=14 GT:AD:DP:GQ:PL:SB 1:0,14,0:14:99:457,0,457:0,0,8,6 +chrX 4783196 . T . . END=4783209 GT:DP:GQ:MIN_DP:PL 0:13:99:13:0,342 +chrX 4783210 . AAGAT A, 474.01 . AS_QUALapprox=|484|0;AS_VarDP=0|11|0;DP=13;QUALapprox=484;RAW_GT_COUNT=0,0,1;RAW_MQandDP=46800,13;VarDP=11 GT:AD:DP:GQ:PL:SB 1:0,11,0:11:99:484,0,484:0,0,7,4 +chrX 4783215 . A . . END=4783702 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,284 +chrX 4783703 . A G, 1111.04 . AS_QUALapprox=|1121|0;AS_VarDP=0|35|0;DP=36;QUALapprox=1121;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129600,36;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,35,0:35:99:1121,0,1121:0,0,18,17 +chrX 4783704 . T . . END=4784029 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,640 +chrX 4784030 . G A, 998.04 . AS_QUALapprox=|1008|0;AS_VarDP=0|30|0;DP=30;QUALapprox=1008;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:1008,0,1008:0,0,16,14 +chrX 4784031 . C . . END=4784227 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,794 +chrX 4784228 . GT G, 639.01 . AS_QUALapprox=|649|0;AS_VarDP=0|23|0;DP=26;QUALapprox=649;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:649,0,649:0,0,11,12 +chrX 4784230 . T . . END=4784545 GT:DP:GQ:MIN_DP:PL 0:20:99:20:0,442 +chrX 4784546 . A G, 565.04 . AS_QUALapprox=|575|0;AS_VarDP=0|18|0;DP=18;QUALapprox=575;RAW_GT_COUNT=0,0,1;RAW_MQandDP=64800,18;VarDP=18 GT:AD:DP:GQ:PL:SB 1:0,18,0:18:99:575,0,575:0,0,8,10 +chrX 4784547 . C . . END=4785262 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,536 +chrX 4785263 . ACC A, 1105.01 . AS_QUALapprox=|1115|0;AS_VarDP=0|28|0;DP=30;QUALapprox=1115;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:1115,0,1115:0,0,17,11 +chrX 4785266 . C . . END=4785308 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,675 +chrX 4785309 . T C, 755.04 . AS_QUALapprox=|765|0;AS_VarDP=0|22|0;DP=24;QUALapprox=765;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:765,0,765:0,0,14,8 +chrX 4785310 . A . . END=4785870 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,551 +chrX 4785871 . C T, 1153.04 . AS_QUALapprox=|1163|0;AS_VarDP=0|37|0;DP=38;QUALapprox=1163;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;VarDP=37 GT:AD:DP:GQ:PL:SB 1:0,37,0:37:99:1163,0,1163:0,0,22,15 +chrX 4785872 . T . . END=4785976 GT:DP:GQ:MIN_DP:PL 0:39:99:39:0,1132 +chrX 4785977 . G A, 1330.04 . AS_QUALapprox=|1340|0;AS_VarDP=0|40|0;DP=40;QUALapprox=1340;RAW_GT_COUNT=0,0,1;RAW_MQandDP=143104,40;VarDP=40 GT:AD:DP:GQ:PL:SB 1:0,40,0:40:99:1340,0,1340:0,0,20,20 +chrX 4785978 . G . . END=4786270 GT:DP:GQ:MIN_DP:PL 0:39:99:39:0,1031 +chrX 4786271 . T C, 1045.04 . AS_QUALapprox=|1055|0;AS_VarDP=0|32|0;DP=33;QUALapprox=1055;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1055,0,1055:0,0,19,13 +chrX 4786272 . T . . END=4786466 GT:DP:GQ:MIN_DP:PL 0:42:99:42:0,1052 +chrX 4786467 . T C, 1288.04 . AS_QUALapprox=|1298|0;AS_VarDP=0|40|0;DP=40;QUALapprox=1298;RAW_GT_COUNT=0,0,1;RAW_MQandDP=144000,40;VarDP=40 GT:AD:DP:GQ:PL:SB 1:0,40,0:40:99:1298,0,1298:0,0,23,17 +chrX 4786468 . T . . END=4787197 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,630 +chrX 4787198 . C T, 884.04 . AS_QUALapprox=|894|0;AS_VarDP=0|26|0;DP=27;QUALapprox=894;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:894,0,894:0,0,12,14 +chrX 4787199 . G . . END=4787592 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,491 +chrX 4787593 . GA G, 513.01 . AS_QUALapprox=|523|0;AS_VarDP=0|19|0;DP=23;QUALapprox=523;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82225,23;VarDP=19 GT:AD:DP:GQ:PL:SB 1:0,19,0:19:99:523,0,523:0,0,14,5 +chrX 4787595 . A . . END=4788000 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,614 +chrX 4788001 . T C, 838.04 . AS_QUALapprox=|848|0;AS_VarDP=0|26|0;DP=27;QUALapprox=848;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:848,0,848:0,0,12,14 +chrX 4788002 . A . . END=4788944 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,481 +chrX 4788945 . T G, 653.04 . AS_QUALapprox=|663|0;AS_VarDP=1|16|0;BaseQRankSum=0.000;DP=17;MQRankSum=0.000;QUALapprox=663;RAW_GT_COUNT=0,0,1;RAW_MQandDP=61200,17;ReadPosRankSum=0.307;VarDP=17 GT:AD:DP:GQ:PL:SB 1:1,16,0:17:99:663,0,708:0,1,8,8 +chrX 4788946 . A . . END=4788961 GT:DP:GQ:MIN_DP:PL 0:16:99:16:0,507 +chrX 4788962 . T A, 619.04 . AS_QUALapprox=|629|0;AS_VarDP=1|15|0;BaseQRankSum=0.000;DP=16;MQRankSum=0.000;QUALapprox=629;RAW_GT_COUNT=0,0,1;RAW_MQandDP=57600,16;ReadPosRankSum=-1.413;VarDP=16 GT:AD:DP:GQ:PL:SB 1:1,15,0:16:99:629,0,674:0,1,7,8 +chrX 4788963 . G . . END=4789012 GT:DP:GQ:MIN_DP:PL 0:20:99:20:0,526 +chrX 4789013 . A T, 579.04 . AS_QUALapprox=|589|0;AS_VarDP=1|19|0;BaseQRankSum=-0.280;DP=21;MQRankSum=0.000;QUALapprox=589;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75600,21;ReadPosRankSum=0.260;VarDP=20 GT:AD:DP:GQ:PL:SB 1:1,19,0:20:99:589,0,624:0,1,10,9 +chrX 4789014 . T . . END=4789142 GT:DP:GQ:MIN_DP:PL 0:11:39:8:0,39 +chrX 4789143 . A AT, 32.01 . AS_QUALapprox=|42|0;AS_VarDP=1|2|0;BaseQRankSum=0.967;DP=14;MQRankSum=-0.967;QUALapprox=42;RAW_GT_COUNT=0,0,1;RAW_MQandDP=34873,14;ReadPosRankSum=0.967;VarDP=3 GT:AD:DP:GQ:PL:SB 1:1,2,0:3:42:42,0,68:1,0,1,1 +chrX 4789144 . A ATATATAT,AATATATATAT, 289.01 . AS_QUALapprox=|299|166|0;AS_VarDP=0|2|0|0;DP=14;QUALapprox=299;RAW_GT_COUNT=0,0,1;RAW_MQandDP=34873,14;VarDP=2 GT:AD:DP:GQ:PL:SB 1:0,2,0,0:2:99:299,0,133,229:0,0,1,1 +chrX 4789145 . A . . END=4789326 GT:DP:GQ:MIN_DP:PL 0:19:99:19:0,209 +chrX 4789327 . T TA, 708.01 . AS_QUALapprox=|718|0;AS_VarDP=0|24|0;DP=25;QUALapprox=718;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:718,0,718:0,0,14,10 +chrX 4789328 . A . . END=4789714 GT:DP:GQ:MIN_DP:PL 0:22:99:22:0,338 +chrX 4789715 . A ATTAGAC, 1424.01 . AS_QUALapprox=|1434|0;AS_VarDP=0|32|0;DP=33;QUALapprox=1434;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1434,0,1434:0,0,17,15 +chrX 4789716 . T . . END=4789793 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,884 +chrX 4789794 . C CGTAA, 1444.01 . AS_QUALapprox=|1454|0;AS_VarDP=1|34|0;BaseQRankSum=-0.635;DP=35;MQRankSum=0.000;QUALapprox=1454;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;ReadPosRankSum=0.743;VarDP=35 GT:AD:DP:GQ:PL:SB 1:1,34,0:35:99:1454,0,1499:1,0,18,16 +chrX 4789795 . G . . END=4791081 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,611 +chrX 4791082 . ATTTTT A, 307.01 . AS_QUALapprox=|317|0;AS_VarDP=3|13|0;BaseQRankSum=-0.611;DP=24;MQRankSum=-0.320;QUALapprox=317;RAW_GT_COUNT=0,0,1;RAW_MQandDP=84400,24;ReadPosRankSum=-0.510;VarDP=16 GT:AD:DP:GQ:PL:SB 1:3,13,0:16:99:317,0,387:2,1,6,7 +chrX 4791088 . T . . END=4791901 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,516 +chrX 4791902 . T C, 1012.04 . AS_QUALapprox=|1022|0;AS_VarDP=0|30|0;DP=31;QUALapprox=1022;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:1022,0,1022:0,0,12,18 +chrX 4791903 . A . . END=4801219 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,457 +chrX 4801220 . G GT, 698.01 . AS_QUALapprox=|708|0;AS_VarDP=0|29|0;DP=33;QUALapprox=708;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:708,0,708:0,0,11,18 +chrX 4801221 . T . . END=4801392 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,818 +chrX 4801393 . G T, 745.04 . AS_QUALapprox=|755|0;AS_VarDP=0|22|0;DP=24;QUALapprox=755;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:755,0,755:0,0,10,12 +chrX 4801394 . T . . END=4803295 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,574 +chrX 4803296 . CT C, 48.01 . AS_QUALapprox=|58|0;AS_VarDP=3|6|0;BaseQRankSum=0.967;DP=28;MQRankSum=0.967;QUALapprox=58;RAW_GT_COUNT=0,0,1;RAW_MQandDP=94225,28;ReadPosRankSum=-0.015;VarDP=9 GT:AD:DP:GQ:PL:SB 1:3,6,0:9:58:58,0,104:2,1,3,3 +chrX 4803298 . T . . END=4806095 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,311 +chrX 4806096 . T TTTTTAA, 1134.01 . AS_QUALapprox=|1144|0;AS_VarDP=0|26|0;DP=30;QUALapprox=1144;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:1144,0,1145:0,0,9,17 +chrX 4806097 . T . . END=4807638 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,561 +chrX 4807639 . G GTTTATC, 1205.01 . AS_QUALapprox=|1215|0;AS_VarDP=0|27|0;DP=27;QUALapprox=1215;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:1215,0,1215:0,0,13,14 +chrX 4807640 . T . . END=4808342 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,651 +chrX 4808343 . T C, 1086.04 . AS_QUALapprox=|1096|0;AS_VarDP=0|35|0;DP=35;QUALapprox=1096;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,35,0:35:99:1096,0,1096:0,0,17,18 +chrX 4808344 . T . . END=4808746 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,755 +chrX 4808747 . T C, 698.04 . AS_QUALapprox=|708|0;AS_VarDP=0|24|0;DP=24;QUALapprox=708;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:708,0,708:0,0,10,14 +chrX 4808748 . G . . END=4809839 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,511 +chrX 4809840 . GA G, 420.01 . AS_QUALapprox=|430|0;AS_VarDP=0|18|0;DP=25;QUALapprox=430;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=18 GT:AD:DP:GQ:PL:SB 1:0,18,0:18:99:430,0,430:0,0,11,7 +chrX 4809842 . A . . END=4810639 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,624 +chrX 4810640 . C T, 937.04 . AS_QUALapprox=|947|0;AS_VarDP=0|29|0;DP=29;QUALapprox=947;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:947,0,947:0,0,14,15 +chrX 4810641 . C . . END=4810706 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,684 +chrX 4810707 . G C, 774.04 . AS_QUALapprox=|784|0;AS_VarDP=0|25|0;DP=25;QUALapprox=784;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:784,0,784:0,0,10,15 +chrX 4810708 . T . . END=4810902 GT:DP:GQ:MIN_DP:PL 0:22:99:22:0,505 +chrX 4810903 . C T, 848.04 . AS_QUALapprox=|858|0;AS_VarDP=0|28|0;DP=28;QUALapprox=858;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:858,0,858:0,0,17,11 +chrX 4810904 . C . . END=4811735 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,328 +chrX 4811736 . A ATTTTTT, 523.01 . AS_QUALapprox=|533|0;AS_VarDP=0|13|0;DP=16;QUALapprox=533;RAW_GT_COUNT=0,0,1;RAW_MQandDP=55600,16;VarDP=13 GT:AD:DP:GQ:PL:SB 1:0,13,0:13:99:533,0,534:0,0,2,11 +chrX 4811737 . T . . END=4812008 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,149 +chrX 4812009 . C T, 630.04 . AS_QUALapprox=|640|0;AS_VarDP=0|21|0;DP=23;QUALapprox=640;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:640,0,640:0,0,10,11 +chrX 4812010 . T . . END=4812738 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,556 +chrX 4812739 . A G, 710.04 . AS_QUALapprox=|720|0;AS_VarDP=0|16|0;DP=17;QUALapprox=720;RAW_GT_COUNT=0,0,1;RAW_MQandDP=61200,17;VarDP=16 GT:AD:DP:GQ:PL:SB 1:0,16,0:16:99:720,0,720:0,0,11,5 +chrX 4812740 . T . . END=4812745 GT:DP:GQ:MIN_DP:PL 0:16:99:16:0,526 +chrX 4812746 . A G, 735.04 . AS_QUALapprox=|745|0;AS_VarDP=0|17|0;DP=17;QUALapprox=745;RAW_GT_COUNT=0,0,1;RAW_MQandDP=61200,17;VarDP=17 GT:AD:DP:GQ:PL:SB 1:0,17,0:17:99:745,0,745:0,0,12,5 +chrX 4812747 . C . . END=4814356 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,333 +chrX 4814357 . G C, 1051.04 . AS_QUALapprox=|1061|0;AS_VarDP=1|35|0;BaseQRankSum=-0.648;DP=37;MQRankSum=0.000;QUALapprox=1061;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133200,37;ReadPosRankSum=-1.108;VarDP=36 GT:AD:DP:GQ:PL:SB 1:1,35,0:36:99:1061,0,1096:0,1,20,15 +chrX 4814358 . T . . END=4815620 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,625 +chrX 4815621 . T C, 818.04 . AS_QUALapprox=|828|0;AS_VarDP=0|27|0;DP=29;QUALapprox=828;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:828,0,828:0,0,18,9 +chrX 4815622 . A . . END=4816322 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,699 +chrX 4816323 . T A, 859.04 . AS_QUALapprox=|869|0;AS_VarDP=0|25|0;DP=27;QUALapprox=869;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:869,0,869:0,0,13,12 +chrX 4816324 . G . . END=4816699 GT:DP:GQ:MIN_DP:PL 0:37:99:37:0,863 +chrX 4816700 . G A, 1190.04 . AS_QUALapprox=|1200|0;AS_VarDP=0|36|0;DP=37;QUALapprox=1200;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133200,37;VarDP=36 GT:AD:DP:GQ:PL:SB 1:0,36,0:36:99:1200,0,1200:0,0,20,16 +chrX 4816701 . A . . END=4818360 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,522 +chrX 4818361 . T C, 842.04 . AS_QUALapprox=|852|0;AS_VarDP=0|28|0;DP=28;QUALapprox=852;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:852,0,852:0,0,16,12 +chrX 4818362 . A . . END=4819830 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,626 +chrX 4819831 . T C, 546.04 . AS_QUALapprox=|556|0;AS_VarDP=1|17|0;BaseQRankSum=0.000;DP=20;MQRankSum=0.000;QUALapprox=556;RAW_GT_COUNT=0,0,1;RAW_MQandDP=72000,20;ReadPosRankSum=-0.193;VarDP=18 GT:AD:DP:GQ:PL:SB 1:1,17,0:18:99:556,0,591:0,1,10,7 +chrX 4819832 . A . . END=4820154 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,720 +chrX 4820155 . C T, 888.04 . AS_QUALapprox=|898|0;AS_VarDP=0|27|0;DP=30;QUALapprox=898;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:898,0,898:0,0,15,12 +chrX 4820156 . A . . END=4820305 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,700 +chrX 4820306 . A T, 681.04 . AS_QUALapprox=|691|0;AS_VarDP=0|20|0;DP=24;QUALapprox=691;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:691,0,691:0,0,9,11 +chrX 4820307 . T . . END=4820844 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,539 +chrX 4820845 . A ATCTG, 723.01 . AS_QUALapprox=|733|0;AS_VarDP=0|17|0;DP=18;QUALapprox=733;RAW_GT_COUNT=0,0,1;RAW_MQandDP=64800,18;VarDP=17 GT:AD:DP:GQ:PL:SB 1:0,17,0:17:99:733,0,733:0,0,7,10 +chrX 4820846 . T . . END=4821928 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,342 +chrX 4821929 . GGAGAGAGGGAGAGAGAGA G, 930.01 . AS_QUALapprox=|940|0;AS_VarDP=0|25|0;DP=25;QUALapprox=940;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:940,0,940:0,0,17,8 +chrX 4821948 . G . . END=4822096 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,616 +chrX 4822097 . A G,AAG, 708.01 . AS_QUALapprox=|0|718|0;AS_VarDP=0|0|20|0;DP=26;QUALapprox=718;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=20 GT:AD:DP:GQ:PL:SB 2:0,0,20,0:20:99:718,966,0,842:0,0,11,9 +chrX 4822098 . A . . END=4822151 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,649 +chrX 4822152 . A C, 788.04 . AS_QUALapprox=|798|0;AS_VarDP=0|25|0;DP=25;QUALapprox=798;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:798,0,798:0,0,11,14 +chrX 4822153 . A . . END=4823429 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,561 +chrX 4823430 . T G, 852.04 . AS_QUALapprox=|862|0;AS_VarDP=0|27|0;DP=29;QUALapprox=862;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:862,0,862:0,0,16,11 +chrX 4823431 . C . . END=4823901 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,656 +chrX 4823902 . C G, 694.04 . AS_QUALapprox=|704|0;AS_VarDP=0|23|0;DP=26;QUALapprox=704;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:704,0,704:0,0,15,8 +chrX 4823903 . T . . END=4823964 GT:DP:GQ:MIN_DP:PL 0:21:99:21:0,511 +chrX 4823965 . A G, 610.04 . AS_QUALapprox=|620|0;AS_VarDP=0|20|0;DP=21;QUALapprox=620;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75600,21;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:620,0,620:0,0,8,12 +chrX 4823966 . T . . END=4824433 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,590 +chrX 4824434 . A C, 879.04 . AS_QUALapprox=|889|0;AS_VarDP=0|27|0;DP=28;QUALapprox=889;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:889,0,889:0,0,11,16 +chrX 4824435 . C . . END=4825218 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,471 +chrX 4825219 . G A, 1428.04 . AS_QUALapprox=|1438|0;AS_VarDP=0|34|0;DP=34;QUALapprox=1438;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1438,0,1438:0,0,19,15 +chrX 4825220 . T . . END=4825238 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,892 +chrX 4825239 . A G, 1295.04 . AS_QUALapprox=|1305|0;AS_VarDP=0|29|0;DP=29;QUALapprox=1305;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:1305,0,1305:0,0,18,11 +chrX 4825240 . A . . END=4825246 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,759 +chrX 4825247 . A G, 1183.04 . AS_QUALapprox=|1193|0;AS_VarDP=0|27|0;DP=27;QUALapprox=1193;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:1193,0,1193:0,0,16,11 +chrX 4825248 . T . . END=4825367 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,813 +chrX 4825368 . ATATCTATCTATCTATC A, 1331.01 . AS_QUALapprox=|1341|0;AS_VarDP=0|30|0;DP=37;QUALapprox=1341;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133200,37;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:1341,0,1341:0,0,11,19 +chrX 4825385 . T . . END=4825774 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,624 +chrX 4825775 . C T, 1048.04 . AS_QUALapprox=|1058|0;AS_VarDP=0|31|0;DP=32;QUALapprox=1058;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1058,0,1058:0,0,17,14 +chrX 4825776 . G . . END=4826000 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,823 +chrX 4826001 . C T, 1123.04 . AS_QUALapprox=|1133|0;AS_VarDP=0|35|0;DP=36;QUALapprox=1133;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129600,36;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,35,0:35:99:1133,0,1133:0,0,20,15 +chrX 4826002 . T . . END=4826726 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,755 +chrX 4826727 . C G, 739.04 . AS_QUALapprox=|749|0;AS_VarDP=0|23|0;DP=25;QUALapprox=749;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:749,0,749:0,0,11,12 +chrX 4826728 . A . . END=4827857 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,729 +chrX 4827858 . C T, 1201.04 . AS_QUALapprox=|1211|0;AS_VarDP=1|37|0;BaseQRankSum=2.662;DP=39;MQRankSum=0.000;QUALapprox=1211;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140400,39;ReadPosRankSum=1.277;VarDP=38 GT:AD:DP:GQ:PL:SB 1:1,37,0:38:99:1211,0,1221:0,1,24,13 +chrX 4827859 . G . . END=4828963 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,526 +chrX 4828964 . C A, 947.04 . AS_QUALapprox=|957|0;AS_VarDP=0|29|0;DP=30;QUALapprox=957;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:957,0,957:0,0,14,15 +chrX 4828965 . A . . END=4829022 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,829 +chrX 4829023 . A G, 844.04 . AS_QUALapprox=|854|0;AS_VarDP=0|26|0;DP=26;QUALapprox=854;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:854,0,854:0,0,14,12 +chrX 4829024 . C . . END=4829175 GT:DP:GQ:MIN_DP:PL 0:22:99:22:0,594 +chrX 4829176 . CACAT C, 541.01 . AS_QUALapprox=|551|0;AS_VarDP=0|17|0;DP=24;QUALapprox=551;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=17 GT:AD:DP:GQ:PL:SB 1:0,17,0:17:99:551,0,551:0,0,9,8 +chrX 4829181 . A . . END=4830955 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,567 +chrX 4830956 . G T, 1087.04 . AS_QUALapprox=|1097|0;AS_VarDP=0|33|0;DP=35;QUALapprox=1097;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1097,0,1097:0,0,24,9 +chrX 4830957 . T . . END=4831543 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,829 +chrX 4831544 . T C, 839.04 . AS_QUALapprox=|849|0;AS_VarDP=0|25|0;DP=27;QUALapprox=849;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:849,0,849:0,0,10,15 +chrX 4831545 . A . . END=4831770 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,774 +chrX 4831771 . A G, 882.04 . AS_QUALapprox=|892|0;AS_VarDP=0|29|0;DP=29;QUALapprox=892;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:892,0,892:0,0,14,15 +chrX 4831772 . C . . END=4832874 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,620 +chrX 4832875 . C T, 937.04 . AS_QUALapprox=|947|0;AS_VarDP=0|28|0;DP=30;QUALapprox=947;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:947,0,947:0,0,14,14 +chrX 4832876 . A . . END=4833245 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,666 +chrX 4833246 . A G, 794.04 . AS_QUALapprox=|804|0;AS_VarDP=0|24|0;DP=24;QUALapprox=804;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:804,0,804:0,0,7,17 +chrX 4833247 . A . . END=4833575 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,733 +chrX 4833576 . C A, 852.04 . AS_QUALapprox=|862|0;AS_VarDP=1|27|0;BaseQRankSum=-0.306;DP=28;MQRankSum=0.000;QUALapprox=862;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;ReadPosRankSum=0.495;VarDP=28 GT:AD:DP:GQ:PL:SB 1:1,27,0:28:99:862,0,897:0,1,14,13 +chrX 4833577 . A . . END=4833658 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,710 +chrX 4833659 . A G, 1017.04 . AS_QUALapprox=|1027|0;AS_VarDP=0|32|0;DP=32;QUALapprox=1027;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1027,0,1027:0,0,14,18 +chrX 4833660 . A . . END=4834603 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,327 +chrX 4834604 . A G, 784.04 . AS_QUALapprox=|794|0;AS_VarDP=1|25|0;BaseQRankSum=-0.320;DP=27;MQRankSum=0.000;QUALapprox=794;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;ReadPosRankSum=-0.867;VarDP=26 GT:AD:DP:GQ:PL:SB 1:1,25,0:26:99:794,0,829:0,1,11,14 +chrX 4834605 . C . . END=4834711 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,759 +chrX 4834712 . T G, 943.04 . AS_QUALapprox=|953|0;AS_VarDP=0|30|0;DP=30;QUALapprox=953;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:953,0,953:0,0,16,14 +chrX 4834713 . T . . END=4834939 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,575 +chrX 4834940 . T C, 779.04 . AS_QUALapprox=|789|0;AS_VarDP=0|24|0;DP=24;QUALapprox=789;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:789,0,789:0,0,12,12 +chrX 4834941 . A . . END=4835641 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,640 +chrX 4835642 . T C, 730.04 . AS_QUALapprox=|740|0;AS_VarDP=0|22|0;DP=22;QUALapprox=740;RAW_GT_COUNT=0,0,1;RAW_MQandDP=79200,22;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:740,0,740:0,0,12,10 +chrX 4835643 . T . . END=4835686 GT:DP:GQ:MIN_DP:PL 0:22:99:22:0,655 +chrX 4835687 . G T, 749.04 . AS_QUALapprox=|759|0;AS_VarDP=0|23|0;DP=25;QUALapprox=759;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:759,0,759:0,0,15,8 +chrX 4835688 . C . . END=4835739 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,635 +chrX 4835740 . C A, 851.04 . AS_QUALapprox=|861|0;AS_VarDP=0|28|0;DP=28;QUALapprox=861;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:861,0,861:0,0,16,12 +chrX 4835741 . T . . END=4835877 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,768 +chrX 4835878 . T G, 960.04 . AS_QUALapprox=|970|0;AS_VarDP=0|31|0;DP=32;QUALapprox=970;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:970,0,970:0,0,18,13 +chrX 4835879 . T . . END=4837359 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,604 +chrX 4837360 . A G, 1058.04 . AS_QUALapprox=|1068|0;AS_VarDP=0|31|0;DP=32;QUALapprox=1068;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1068,0,1068:0,0,19,12 +chrX 4837361 . A . . END=4838936 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,616 +chrX 4838937 . C CAT, 893.01 . AS_QUALapprox=|903|0;AS_VarDP=0|25|0;DP=29;QUALapprox=903;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:903,0,903:0,0,11,14 +chrX 4838938 . A . . END=4839684 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,487 +chrX 4839685 . G C, 704.04 . AS_QUALapprox=|714|0;AS_VarDP=0|22|0;DP=24;QUALapprox=714;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:714,0,714:0,0,10,12 +chrX 4839686 . T . . END=4840944 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,620 +chrX 4840945 . C T, 947.04 . AS_QUALapprox=|957|0;AS_VarDP=0|30|0;DP=31;QUALapprox=957;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:957,0,957:0,0,17,13 +chrX 4840946 . G . . END=4841827 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,360 +chrX 4841828 . CATATATATATATATATATAT C, 658.01 . AS_QUALapprox=|668|0;AS_VarDP=0|16|0;DP=18;QUALapprox=668;RAW_GT_COUNT=0,0,1;RAW_MQandDP=64800,18;VarDP=16 GT:AD:DP:GQ:PL:SB 1:0,16,0:16:99:668,0,668:0,0,9,7 +chrX 4841849 . A C, 658.04 . AS_QUALapprox=|668|0;AS_VarDP=0|16|0;DP=17;QUALapprox=668;RAW_GT_COUNT=0,0,1;RAW_MQandDP=61200,17;VarDP=16 GT:AD:DP:GQ:PL:SB 1:0,16,0:16:99:668,0,668:0,0,9,7 +chrX 4841850 . T . . END=4842176 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,422 +chrX 4842177 . GA G, 691.01 . AS_QUALapprox=|701|0;AS_VarDP=0|22|0;DP=28;QUALapprox=701;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:701,0,701:0,0,10,12 +chrX 4842179 . A . . END=4842807 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,754 +chrX 4842808 . T C, 965.04 . AS_QUALapprox=|975|0;AS_VarDP=1|32|0;BaseQRankSum=1.551;DP=34;MQRankSum=0.000;QUALapprox=975;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;ReadPosRankSum=-1.471;VarDP=33 GT:AD:DP:GQ:PL:SB 1:1,32,0:33:99:975,0,1000:0,1,21,11 +chrX 4842809 . C . . END=4844304 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,467 +chrX 4844305 . C T, 664.04 . AS_QUALapprox=|674|0;AS_VarDP=0|20|0;DP=20;QUALapprox=674;RAW_GT_COUNT=0,0,1;RAW_MQandDP=72000,20;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:674,0,674:0,0,13,7 +chrX 4844306 . T . . END=4844420 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,714 +chrX 4844421 . A G, 745.04 . AS_QUALapprox=|755|0;AS_VarDP=0|22|0;DP=22;QUALapprox=755;RAW_GT_COUNT=0,0,1;RAW_MQandDP=79200,22;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:755,0,755:0,0,5,17 +chrX 4844422 . C . . END=4845894 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,630 +chrX 4845895 . A G, 977.04 . AS_QUALapprox=|987|0;AS_VarDP=0|31|0;DP=33;QUALapprox=987;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:987,0,987:0,0,17,14 +chrX 4845896 . T . . END=4846312 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,783 +chrX 4846313 . C T, 1126.04 . AS_QUALapprox=|1136|0;AS_VarDP=0|36|0;DP=37;QUALapprox=1136;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133200,37;VarDP=36 GT:AD:DP:GQ:PL:SB 1:0,36,0:36:99:1136,0,1136:0,0,20,16 +chrX 4846314 . C . . END=4846516 GT:DP:GQ:MIN_DP:PL 0:40:99:40:0,1086 +chrX 4846517 . G A, 1132.04 . AS_QUALapprox=|1142|0;AS_VarDP=0|34|0;DP=34;QUALapprox=1142;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1142,0,1142:0,0,13,21 +chrX 4846518 . T . . END=4847072 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,552 +chrX 4847073 . T C, 739.04 . AS_QUALapprox=|749|0;AS_VarDP=0|24|0;DP=24;QUALapprox=749;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:749,0,749:0,0,14,10 +chrX 4847074 . C . . END=4847735 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,393 +chrX 4847736 . A G, 972.04 . AS_QUALapprox=|982|0;AS_VarDP=0|31|0;DP=32;QUALapprox=982;RAW_GT_COUNT=0,0,1;RAW_MQandDP=109147,32;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:982,0,982:0,0,15,16 +chrX 4847737 . T . . END=4848142 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,655 +chrX 4848143 . T TG, 1138.01 . AS_QUALapprox=|1148|0;AS_VarDP=0|31|0;DP=33;QUALapprox=1148;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1148,0,1148:0,0,15,16 +chrX 4848144 . G . . END=4848773 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,115 +chrX 4848774 . C CAT, 935.01 . AS_QUALapprox=|945|0;AS_VarDP=1|26|0;BaseQRankSum=-0.389;DP=34;MQRankSum=0.000;QUALapprox=945;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;ReadPosRankSum=1.092;VarDP=27 GT:AD:DP:GQ:PL:SB 1:1,26,0:27:99:945,0,983:0,1,11,15 +chrX 4848775 . A . . END=4849298 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,510 +chrX 4849299 . A G, 982.04 . AS_QUALapprox=|992|0;AS_VarDP=0|31|0;DP=32;QUALapprox=992;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:992,0,992:0,0,20,11 +chrX 4849300 . T . . END=4849348 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,809 +chrX 4849349 . C T, 898.04 . AS_QUALapprox=|908|0;AS_VarDP=0|29|0;DP=29;QUALapprox=908;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:908,0,908:0,0,18,11 +chrX 4849350 . A . . END=4850120 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,536 +chrX 4850121 . C A, 913.04 . AS_QUALapprox=|923|0;AS_VarDP=0|28|0;DP=28;QUALapprox=923;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:923,0,923:0,0,17,11 +chrX 4850122 . C . . END=4851652 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,620 +chrX 4851653 . T C, 1330.04 . AS_QUALapprox=|1340|0;AS_VarDP=0|40|0;DP=41;QUALapprox=1340;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147600,41;VarDP=40 GT:AD:DP:GQ:PL:SB 1:0,40,0:40:99:1340,0,1340:0,0,20,20 +chrX 4851654 . C . . END=4852226 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,616 +chrX 4852227 . C T, 938.04 . AS_QUALapprox=|948|0;AS_VarDP=0|29|0;DP=30;QUALapprox=948;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:948,0,948:0,0,11,18 +chrX 4852228 . G . . END=4852242 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,862 +chrX 4852243 . A ATATTTTATTTTATTT, 994.01 . AS_QUALapprox=|1004|0;AS_VarDP=0|24|0;DP=30;QUALapprox=1004;RAW_GT_COUNT=0,0,1;RAW_MQandDP=107425,30;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:1004,0,1006:0,0,10,14 +chrX 4852244 . T . . END=4853182 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,421 +chrX 4853183 . G A, 899.04 . AS_QUALapprox=|909|0;AS_VarDP=0|27|0;DP=27;QUALapprox=909;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:909,0,909:0,0,10,17 +chrX 4853184 . G . . END=4853580 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,688 +chrX 4853581 . G C, 1057.04 . AS_QUALapprox=|1067|0;AS_VarDP=0|33|0;DP=33;QUALapprox=1067;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1067,0,1067:0,0,15,18 +chrX 4853582 . A . . END=4854151 GT:DP:GQ:MIN_DP:PL 0:38:99:38:0,843 +chrX 4854152 . T C, 952.04 . AS_QUALapprox=|962|0;AS_VarDP=0|31|0;DP=32;QUALapprox=962;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:962,0,962:0,0,20,11 +chrX 4854153 . A . . END=4854289 GT:DP:GQ:MIN_DP:PL 0:40:99:40:0,1062 +chrX 4854290 . T TG, 1250.01 . AS_QUALapprox=|1260|0;AS_VarDP=0|34|0;DP=35;QUALapprox=1260;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1260,0,1260:0,0,15,19 +chrX 4854291 . G . . END=4854452 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,1017 +chrX 4854453 . T G, 1206.04 . AS_QUALapprox=|1216|0;AS_VarDP=0|38|0;DP=38;QUALapprox=1216;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;VarDP=38 GT:AD:DP:GQ:PL:SB 1:0,38,0:38:99:1216,0,1216:0,0,21,17 +chrX 4854454 . A . . END=4854465 GT:DP:GQ:MIN_DP:PL 0:38:99:38:0,1171 +chrX 4854466 . C G, 1251.04 . AS_QUALapprox=|1261|0;AS_VarDP=0|38|0;DP=38;QUALapprox=1261;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;VarDP=38 GT:AD:DP:GQ:PL:SB 1:0,38,0:38:99:1261,0,1261:0,0,20,18 +chrX 4854467 . A . . END=4855000 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,605 +chrX 4855001 . A G, 1046.04 . AS_QUALapprox=|1056|0;AS_VarDP=0|34|0;DP=35;QUALapprox=1056;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1056,0,1056:0,0,17,17 +chrX 4855002 . G . . END=4855341 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,695 +chrX 4855342 . T C, 943.04 . AS_QUALapprox=|953|0;AS_VarDP=0|29|0;DP=31;QUALapprox=953;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:953,0,953:0,0,14,15 +chrX 4855343 . T . . END=4855585 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,730 +chrX 4855586 . C CAG, 1273.01 . AS_QUALapprox=|1283|0;AS_VarDP=0|29|0;DP=30;QUALapprox=1283;RAW_GT_COUNT=0,0,1;RAW_MQandDP=107425,30;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:1283,0,1283:0,0,14,15 +chrX 4855587 . A . . END=4856045 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,694 +chrX 4856046 . G A, 665.04 . AS_QUALapprox=|675|0;AS_VarDP=1|22|0;BaseQRankSum=-0.343;DP=24;MQRankSum=0.000;QUALapprox=675;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;ReadPosRankSum=-0.528;VarDP=23 GT:AD:DP:GQ:PL:SB 1:1,22,0:23:99:675,0,709:1,0,12,10 +chrX 4856047 . G . . END=4857077 GT:DP:GQ:MIN_DP:PL 0:38:99:38:0,604 +chrX 4857078 . T C, 967.04 . AS_QUALapprox=|977|0;AS_VarDP=0|30|0;DP=30;QUALapprox=977;RAW_GT_COUNT=0,0,1;RAW_MQandDP=106704,30;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:977,0,977:0,0,17,13 +chrX 4857079 . A . . END=4858620 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,575 +chrX 4858621 . A C, 869.04 . AS_QUALapprox=|879|0;AS_VarDP=0|20|0;DP=20;QUALapprox=879;RAW_GT_COUNT=0,0,1;RAW_MQandDP=72000,20;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:879,0,879:0,0,9,11 +chrX 4858622 . C . . END=4858636 GT:DP:GQ:MIN_DP:PL 0:19:99:19:0,580 +chrX 4858637 . G GTA, 885.01 . AS_QUALapprox=|895|0;AS_VarDP=0|20|0;DP=22;QUALapprox=895;RAW_GT_COUNT=0,0,1;RAW_MQandDP=79200,22;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:895,0,895:0,0,10,10 +chrX 4858638 . T . . END=4858679 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,685 +chrX 4858680 . T C, 792.04 . AS_QUALapprox=|802|0;AS_VarDP=0|27|0;DP=29;QUALapprox=802;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:802,0,802:0,0,13,14 +chrX 4858681 . A . . END=4858898 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,649 +chrX 4858899 . T C, 977.04 . AS_QUALapprox=|987|0;AS_VarDP=0|31|0;DP=32;QUALapprox=987;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:987,0,987:0,0,18,13 +chrX 4858900 . A . . END=4860494 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,610 +chrX 4860495 . A AATG, 1454.01 . AS_QUALapprox=|1464|0;AS_VarDP=0|33|0;DP=34;QUALapprox=1464;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1464,0,1464:0,0,18,15 +chrX 4860496 . A . . END=4860724 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,630 +chrX 4860725 . TTGTG T, 531.01 . AS_QUALapprox=|541|0;AS_VarDP=0|12|0;DP=22;QUALapprox=541;RAW_GT_COUNT=0,0,1;RAW_MQandDP=79200,22;VarDP=12 GT:AD:DP:GQ:PL:SB 1:0,12,0:12:99:541,0,541:0,0,6,6 +chrX 4860730 . T . . END=4860913 GT:DP:GQ:MIN_DP:PL 0:21:99:21:0,516 +chrX 4860914 . C A, 767.04 . AS_QUALapprox=|777|0;AS_VarDP=0|23|0;DP=23;QUALapprox=777;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:777,0,777:0,0,11,12 +chrX 4860915 . A . . END=4860941 GT:DP:GQ:MIN_DP:PL 0:22:99:22:0,646 +chrX 4860942 . C T, 624.04 . AS_QUALapprox=|634|0;AS_VarDP=0|19|0;DP=19;QUALapprox=634;RAW_GT_COUNT=0,0,1;RAW_MQandDP=68400,19;VarDP=19 GT:AD:DP:GQ:PL:SB 1:0,19,0:19:99:634,0,634:0,0,10,9 +chrX 4860943 . A . . END=4862138 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,586 +chrX 4862139 . G A, 705.04 . AS_QUALapprox=|715|0;AS_VarDP=0|22|0;DP=23;QUALapprox=715;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:715,0,715:0,0,15,7 +chrX 4862140 . C . . END=4862544 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,664 +chrX 4862545 . C T, 943.04 . AS_QUALapprox=|953|0;AS_VarDP=0|29|0;DP=29;QUALapprox=953;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:953,0,953:0,0,11,18 +chrX 4862546 . A . . END=4863503 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,566 +chrX 4863504 . C T, 824.04 . AS_QUALapprox=|834|0;AS_VarDP=0|25|0;DP=25;QUALapprox=834;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:834,0,834:0,0,13,12 +chrX 4863505 . G . . END=4863758 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,542 +chrX 4863759 . A G, 650.04 . AS_QUALapprox=|660|0;AS_VarDP=0|20|0;DP=20;QUALapprox=660;RAW_GT_COUNT=0,0,1;RAW_MQandDP=72000,20;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:660,0,660:0,0,10,10 +chrX 4863760 . C . . END=4864503 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,497 +chrX 4864504 . GTATATATGTCCATATATAAATATATGAATATATAAATTTATATGTTCATATATAAATATATGAACATATAAATT G, 832.01 . AS_QUALapprox=|842|0;AS_VarDP=0|20|0;DP=24;QUALapprox=842;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:842,0,842:0,0,10,10 +chrX 4864579 . T . . END=4864638 GT:DP:GQ:MIN_DP:PL 0:20:99:20:0,180 +chrX 4864639 . C CATATGT, 1025.01 . AS_QUALapprox=|1035|0;AS_VarDP=0|23|0;DP=24;QUALapprox=1035;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:1035,0,1035:0,0,14,9 +chrX 4864640 . A . . END=4864757 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,724 +chrX 4864758 . T TTATA, 1422.01 . AS_QUALapprox=|1432|0;AS_VarDP=0|33|0;DP=35;QUALapprox=1432;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1432,0,1432:0,0,16,17 +chrX 4864759 . T . . END=4865204 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,704 +chrX 4865205 . A C, 1398.04 . AS_QUALapprox=|1408|0;AS_VarDP=1|46|0;BaseQRankSum=1.385;DP=48;MQRankSum=0.000;QUALapprox=1408;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;ReadPosRankSum=-0.406;VarDP=47 GT:AD:DP:GQ:PL:SB 1:1,46,0:47:99:1408,0,1433:0,1,20,26 +chrX 4865206 . A . . END=4865353 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,948 +chrX 4865354 . T C, 916.04 . AS_QUALapprox=|926|0;AS_VarDP=0|28|0;DP=29;QUALapprox=926;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:926,0,926:0,0,14,14 +chrX 4865355 . T . . END=4865566 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,674 +chrX 4865567 . A AT, 857.01 . AS_QUALapprox=|867|0;AS_VarDP=1|29|0;BaseQRankSum=-0.471;DP=31;MQRankSum=0.000;QUALapprox=867;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;ReadPosRankSum=-1.388;VarDP=30 GT:AD:DP:GQ:PL:SB 1:1,29,0:30:99:867,0,898:1,0,13,16 +chrX 4865568 . T . . END=4865936 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,788 +chrX 4865937 . T C, 878.04 . AS_QUALapprox=|888|0;AS_VarDP=0|27|0;DP=30;QUALapprox=888;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:888,0,888:0,0,13,14 +chrX 4865938 . G . . END=4866054 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,770 +chrX 4866055 . G GTCA, 1250.01 . AS_QUALapprox=|1260|0;AS_VarDP=0|28|0;DP=29;QUALapprox=1260;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:1260,0,1260:0,0,15,13 +chrX 4866056 . T . . END=4866763 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,725 +chrX 4866764 . T TA, 932.01 . AS_QUALapprox=|942|0;AS_VarDP=0|29|0;DP=33;QUALapprox=942;RAW_GT_COUNT=0,0,1;RAW_MQandDP=117225,33;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:942,0,942:0,0,18,11 +chrX 4866765 . A . . END=4866909 GT:DP:GQ:MIN_DP:PL 0:37:99:37:0,952 +chrX 4866910 . C CA, 792.01 . AS_QUALapprox=|802|0;AS_VarDP=0|31|0;DP=38;QUALapprox=802;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:802,0,802:0,0,13,18 +chrX 4866911 . A . . END=4867410 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,283 +chrX 4867411 . A AATATATATCATATATATCAAAT, 1101.01 . AS_QUALapprox=|1111|0;AS_VarDP=0|26|0;DP=27;QUALapprox=1111;RAW_GT_COUNT=0,0,1;RAW_MQandDP=89501,27;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:1111,0,1111:0,0,15,11 +chrX 4867412 . A . . END=4867420 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,585 +chrX 4867421 . A . . END=4867422 GT:DP:GQ:MIN_DP:PL 0:30:0:30:0,0 +chrX 4867423 . A . . END=4871987 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,387 +chrX 4871988 . T C, 857.04 . AS_QUALapprox=|867|0;AS_VarDP=0|29|0;DP=35;QUALapprox=867;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:867,0,867:0,0,14,15 +chrX 4871989 . G . . END=4872813 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,522 +chrX 4872814 . A AT, 1159.01 . AS_QUALapprox=|1169|0;AS_VarDP=0|29|0;DP=34;QUALapprox=1169;RAW_GT_COUNT=0,0,1;RAW_MQandDP=121825,34;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:1169,0,1169:0,0,17,12 +chrX 4872815 . C . . END=4872887 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,897 +chrX 4872888 . G A, 1062.04 . AS_QUALapprox=|1072|0;AS_VarDP=0|32|0;DP=32;QUALapprox=1072;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1072,0,1072:0,0,17,15 +chrX 4872889 . C . . END=4873029 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,889 +chrX 4873030 . C T, 927.04 . AS_QUALapprox=|937|0;AS_VarDP=0|30|0;DP=34;QUALapprox=937;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:937,0,937:0,0,13,17 +chrX 4873031 . G . . END=4874109 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,591 +chrX 4874110 . C T, 933.04 . AS_QUALapprox=|943|0;AS_VarDP=0|29|0;DP=30;QUALapprox=943;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:943,0,943:0,0,16,13 +chrX 4874111 . G . . END=4874231 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,774 +chrX 4874232 . C CGTGT, 755.01 . AS_QUALapprox=|765|0;AS_VarDP=0|17|0;DP=20;QUALapprox=765;RAW_GT_COUNT=0,0,1;RAW_MQandDP=72000,20;VarDP=17 GT:AD:DP:GQ:PL:SB 1:0,17,0:17:99:765,0,765:0,0,9,8 +chrX 4874233 . G . . END=4874311 GT:DP:GQ:MIN_DP:PL 0:20:99:20:0,561 +chrX 4874312 . A G, 695.04 . AS_QUALapprox=|705|0;AS_VarDP=0|22|0;DP=23;QUALapprox=705;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:705,0,705:0,0,13,9 +chrX 4874313 . A . . END=4876029 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,421 +chrX 4876030 . G A, 878.04 . AS_QUALapprox=|888|0;AS_VarDP=0|28|0;DP=29;QUALapprox=888;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:888,0,888:0,0,10,18 +chrX 4876031 . T . . END=4876117 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,248 +chrX 4876118 . C CCCTTTCCCACCTGTATCCTCTCTCTCCTCTCTCTCCCCCTCCTCTCTCCCCCCCTCCTCTCTCCCCCCCTCCTCTCTCCCCCTCCTCTCCCTCCCCTTCCTCTCTCT, 874.01 . AS_QUALapprox=|884|0;AS_VarDP=3|21|0;BaseQRankSum=-0.500;DP=24;MQRankSum=3.191;QUALapprox=884;RAW_GT_COUNT=0,0,1;RAW_MQandDP=78019,24;ReadPosRankSum=-0.516;VarDP=24 GT:AD:DP:GQ:PL:SB 1:3,21,0:24:99:884,0,891:1,2,10,11 +chrX 4876119 . C . . END=4876120 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,900 +chrX 4876121 . C . . END=4876124 GT:DP:GQ:MIN_DP:PL 0:28:0:28:0,0 +chrX 4876125 . C . . END=4876128 GT:DP:GQ:MIN_DP:PL 0:37:75:37:0,75 +chrX 4876129 . T . . END=4876130 GT:DP:GQ:MIN_DP:PL 0:29:0:29:0,0 +chrX 4876131 . T . . END=4876131 GT:DP:GQ:MIN_DP:PL 0:26:80:26:0,80 +chrX 4876132 . C . . END=4876132 GT:DP:GQ:MIN_DP:PL 0:30:10:30:0,10 +chrX 4876133 . T . . END=4876136 GT:DP:GQ:MIN_DP:PL 0:29:49:29:0,49 +chrX 4876137 . A . . END=4876137 GT:DP:GQ:MIN_DP:PL 0:32:0:32:0,0 +chrX 4876138 . C . . END=4878377 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,506 +chrX 4878378 . T C, 987.04 . AS_QUALapprox=|997|0;AS_VarDP=1|32|0;BaseQRankSum=-0.495;DP=33;MQRankSum=0.000;QUALapprox=997;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;ReadPosRankSum=-0.683;VarDP=33 GT:AD:DP:GQ:PL:SB 1:1,32,0:33:99:997,0,1032:0,1,13,19 +chrX 4878379 . A . . END=4878575 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,804 +chrX 4878576 . T C, 966.04 . AS_QUALapprox=|976|0;AS_VarDP=0|31|0;DP=33;QUALapprox=976;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:976,0,976:0,0,15,16 +chrX 4878577 . T . . END=4879429 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,606 +chrX 4879430 . T G, 641.04 . AS_QUALapprox=|651|0;AS_VarDP=0|19|0;DP=21;QUALapprox=651;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75600,21;VarDP=19 GT:AD:DP:GQ:PL:SB 1:0,19,0:19:99:651,0,651:0,0,6,13 +chrX 4879431 . T . . END=4881093 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,487 +chrX 4881094 . C T, 1038.04 . AS_QUALapprox=|1048|0;AS_VarDP=0|31|0;DP=33;QUALapprox=1048;RAW_GT_COUNT=0,0,1;RAW_MQandDP=117700,33;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1048,0,1048:0,0,13,18 +chrX 4881095 . C . . END=4881350 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,892 +chrX 4881351 . T C, 879.04 . AS_QUALapprox=|889|0;AS_VarDP=0|27|0;DP=30;QUALapprox=889;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:889,0,889:0,0,12,15 +chrX 4881352 . G . . END=4881827 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,664 +chrX 4881828 . T C, 928.04 . AS_QUALapprox=|938|0;AS_VarDP=0|29|0;DP=29;QUALapprox=938;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:938,0,938:0,0,14,15 +chrX 4881829 . C . . END=4882696 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,561 +chrX 4882697 . C A, 1003.04 . AS_QUALapprox=|1013|0;AS_VarDP=1|31|0;BaseQRankSum=-0.214;DP=32;MQRankSum=0.000;QUALapprox=1013;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;ReadPosRankSum=-0.650;VarDP=32 GT:AD:DP:GQ:PL:SB 1:1,31,0:32:99:1013,0,1048:0,1,17,14 +chrX 4882698 . T . . END=4883870 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,471 +chrX 4883871 . A C, 1021.04 . AS_QUALapprox=|1031|0;AS_VarDP=0|32|0;DP=34;QUALapprox=1031;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1031,0,1031:0,0,17,15 +chrX 4883872 . T . . END=4884993 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,506 +chrX 4884994 . C G, 1238.04 . AS_QUALapprox=|1248|0;AS_VarDP=0|28|0;DP=29;QUALapprox=1248;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:1248,0,1248:0,0,11,17 +chrX 4884995 . C . . END=4884995 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,888 +chrX 4884996 . G A, 1238.04 . AS_QUALapprox=|1248|0;AS_VarDP=0|28|0;DP=29;QUALapprox=1248;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:1248,0,1248:0,0,11,17 +chrX 4884997 . G . . END=4885130 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,725 +chrX 4885131 . A G, 734.04 . AS_QUALapprox=|744|0;AS_VarDP=0|24|0;DP=24;QUALapprox=744;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:744,0,744:0,0,12,12 +chrX 4885132 . C . . END=4885541 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,640 +chrX 4885542 . C T, 858.04 . AS_QUALapprox=|868|0;AS_VarDP=0|27|0;DP=32;QUALapprox=868;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:868,0,868:0,0,15,12 +chrX 4885543 . C . . END=4886630 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,716 +chrX 4886631 . A C, 734.04 . AS_QUALapprox=|744|0;AS_VarDP=1|25|0;BaseQRankSum=1.398;DP=27;MQRankSum=0.000;QUALapprox=744;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;ReadPosRankSum=1.000;VarDP=26 GT:AD:DP:GQ:PL:SB 1:1,25,0:26:99:744,0,768:0,1,9,16 +chrX 4886632 . C . . END=4888443 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,545 +chrX 4888444 . GGATT G, 1378.01 . AS_QUALapprox=|1388|0;AS_VarDP=0|31|0;DP=33;QUALapprox=1388;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1388,0,1388:0,0,19,12 +chrX 4888449 . A . . END=4889290 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,704 +chrX 4889291 . C T, 849.04 . AS_QUALapprox=|859|0;AS_VarDP=0|25|0;DP=25;QUALapprox=859;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:859,0,859:0,0,15,10 +chrX 4889292 . G . . END=4889573 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,618 +chrX 4889574 . T C, 749.04 . AS_QUALapprox=|759|0;AS_VarDP=0|23|0;DP=25;QUALapprox=759;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:759,0,759:0,0,11,12 +chrX 4889575 . G . . END=4889688 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,596 +chrX 4889689 . G C, 764.04 . AS_QUALapprox=|774|0;AS_VarDP=0|25|0;DP=27;QUALapprox=774;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:774,0,774:0,0,10,15 +chrX 4889690 . G . . END=4891507 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,569 +chrX 4891508 . C CA, 1261.01 . AS_QUALapprox=|1271|0;AS_VarDP=0|34|0;DP=36;QUALapprox=1271;RAW_GT_COUNT=0,0,1;RAW_MQandDP=119189,36;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1271,0,1271:0,0,19,15 +chrX 4891509 . A . . END=4891946 GT:DP:GQ:MIN_DP:PL 0:37:99:37:0,690 +chrX 4891947 . C G, 886.04 . AS_QUALapprox=|896|0;AS_VarDP=0|20|0;DP=21;QUALapprox=896;RAW_GT_COUNT=0,0,1;RAW_MQandDP=33248,21;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:896,0,896:0,0,9,11 +chrX 4891948 . T . . END=4891953 GT:DP:GQ:MIN_DP:PL 0:21:99:21:0,640 +chrX 4891954 . T C, 921.04 . AS_QUALapprox=|931|0;AS_VarDP=0|21|0;DP=22;QUALapprox=931;RAW_GT_COUNT=0,0,1;RAW_MQandDP=35273,22;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:931,0,931:0,0,10,11 +chrX 4891955 . C . . END=4892217 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,759 +chrX 4892218 . T C, 788.04 . AS_QUALapprox=|798|0;AS_VarDP=0|26|0;DP=31;QUALapprox=798;RAW_GT_COUNT=0,0,1;RAW_MQandDP=92681,31;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:798,0,798:0,0,13,13 +chrX 4892219 . G . . END=4893162 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,686 +chrX 4893163 . G A, 729.04 . AS_QUALapprox=|739|0;AS_VarDP=0|22|0;DP=23;QUALapprox=739;RAW_GT_COUNT=0,0,1;RAW_MQandDP=43568,23;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:739,0,739:0,0,10,12 +chrX 4893164 . T . . END=4894013 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,471 +chrX 4894014 . A G, 674.04 . AS_QUALapprox=|684|0;AS_VarDP=1|23|0;BaseQRankSum=-0.619;DP=25;MQRankSum=2.445;QUALapprox=684;RAW_GT_COUNT=0,0,1;RAW_MQandDP=80018,25;ReadPosRankSum=-0.434;VarDP=24 GT:AD:DP:GQ:PL:SB 1:1,23,0:24:99:684,0,719:0,1,13,10 +chrX 4894015 . G . . END=4894225 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,536 +chrX 4894226 . A G, 1038.04 . AS_QUALapprox=|1048|0;AS_VarDP=0|24|0;DP=24;QUALapprox=1048;RAW_GT_COUNT=0,0,1;RAW_MQandDP=61852,24;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:1048,0,1048:0,0,12,12 +chrX 4894227 . G . . END=4894235 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,664 +chrX 4894236 . A G, 1013.04 . AS_QUALapprox=|1023|0;AS_VarDP=0|23|0;DP=23;QUALapprox=1023;RAW_GT_COUNT=0,0,1;RAW_MQandDP=58252,23;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:1023,0,1023:0,0,11,12 +chrX 4894237 . G . . END=4894329 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,565 +chrX 4894330 . C T, 770.04 . AS_QUALapprox=|780|0;AS_VarDP=0|23|0;DP=26;QUALapprox=780;RAW_GT_COUNT=0,0,1;RAW_MQandDP=70731,26;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:780,0,780:0,0,9,14 +chrX 4894331 . A . . END=4894618 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,719 +chrX 4894619 . C T, 1286.04 . AS_QUALapprox=|1296|0;AS_VarDP=0|38|0;DP=39;QUALapprox=1296;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133097,39;VarDP=38 GT:AD:DP:GQ:PL:SB 1:0,38,0:38:99:1296,0,1296:0,0,18,20 +chrX 4894620 . G . . END=4894883 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,883 +chrX 4894884 . T C, 1094.04 . AS_QUALapprox=|1104|0;AS_VarDP=0|33|0;DP=33;QUALapprox=1104;RAW_GT_COUNT=0,0,1;RAW_MQandDP=53865,33;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1104,0,1104:0,0,20,13 +chrX 4894885 . T . . END=4894957 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,911 +chrX 4894958 . A T, 1153.04 . AS_QUALapprox=|1163|0;AS_VarDP=0|36|0;DP=36;QUALapprox=1163;RAW_GT_COUNT=0,0,1;RAW_MQandDP=92595,36;VarDP=36 GT:AD:DP:GQ:PL:SB 1:0,36,0:36:99:1163,0,1163:0,0,18,18 +chrX 4894959 . C . . END=4895063 GT:DP:GQ:MIN_DP:PL 0:34:99:34:0,919 +chrX 4895064 . A T, 908.04 . AS_QUALapprox=|918|0;AS_VarDP=0|28|0;DP=28;QUALapprox=918;RAW_GT_COUNT=0,0,1;RAW_MQandDP=95626,28;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:918,0,918:0,0,8,20 +chrX 4895065 . T . . END=4896240 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,576 +chrX 4896241 . T C, 843.04 . AS_QUALapprox=|853|0;AS_VarDP=0|28|0;DP=29;QUALapprox=853;RAW_GT_COUNT=0,0,1;RAW_MQandDP=64752,29;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:853,0,853:0,0,14,14 +chrX 4896242 . G . . END=4896470 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,675 +chrX 4896471 . T A, 823.04 . AS_QUALapprox=|833|0;AS_VarDP=0|27|0;DP=27;QUALapprox=833;RAW_GT_COUNT=0,0,1;RAW_MQandDP=38283,27;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:833,0,833:0,0,9,18 +chrX 4896472 . A . . END=4896634 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,639 +chrX 4896635 . C T, 716.04 . AS_QUALapprox=|726|0;AS_VarDP=0|23|0;DP=23;QUALapprox=726;RAW_GT_COUNT=0,0,1;RAW_MQandDP=34330,23;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:726,0,726:0,0,15,8 +chrX 4896636 . C . . END=4896748 GT:DP:GQ:MIN_DP:PL 0:18:99:18:0,450 +chrX 4896749 . G A, 880.04 . AS_QUALapprox=|890|0;AS_VarDP=1|21|0;BaseQRankSum=3.402;DP=23;MQRankSum=-0.430;QUALapprox=890;RAW_GT_COUNT=0,0,1;RAW_MQandDP=31780,23;ReadPosRankSum=-0.083;VarDP=22 GT:AD:DP:GQ:PL:SB 1:1,21,0:22:99:890,0,924:0,1,11,10 +chrX 4896750 . C . . END=4896750 GT:DP:GQ:MIN_DP:PL 0:20:99:20:0,675 +chrX 4896751 . C A, 880.04 . AS_QUALapprox=|890|0;AS_VarDP=1|21|0;BaseQRankSum=1.735;DP=22;MQRankSum=-0.430;QUALapprox=890;RAW_GT_COUNT=0,0,1;RAW_MQandDP=30180,22;ReadPosRankSum=-0.158;VarDP=22 GT:AD:DP:GQ:PL:SB 1:1,21,0:22:99:890,0,924:0,1,11,10 +chrX 4896752 . G . . END=4896763 GT:DP:GQ:MIN_DP:PL 0:21:99:21:0,600 +chrX 4896764 . A G, 810.04 . AS_QUALapprox=|820|0;AS_VarDP=1|20|0;BaseQRankSum=-0.541;DP=22;MQRankSum=-0.311;QUALapprox=820;RAW_GT_COUNT=0,0,1;RAW_MQandDP=30261,22;ReadPosRankSum=-0.174;VarDP=21 GT:AD:DP:GQ:PL:SB 1:1,20,0:21:99:820,0,865:0,1,11,9 +chrX 4896765 . C . . END=4896766 GT:DP:GQ:MIN_DP:PL 0:20:99:20:0,695 +chrX 4896767 . C T, 844.04 . AS_QUALapprox=|854|0;AS_VarDP=1|21|0;BaseQRankSum=4.588;DP=22;MQRankSum=-0.191;QUALapprox=854;RAW_GT_COUNT=0,0,1;RAW_MQandDP=32261,22;ReadPosRankSum=-0.348;VarDP=22 GT:AD:DP:GQ:PL:SB 1:1,21,0:22:99:854,0,899:0,1,12,9 +chrX 4896768 . G . . END=4896773 GT:DP:GQ:MIN_DP:PL 0:21:99:21:0,681 +chrX 4896774 . G A, 835.04 . AS_QUALapprox=|845|0;AS_VarDP=1|20|0;BaseQRankSum=1.778;DP=21;MQRankSum=-0.197;QUALapprox=845;RAW_GT_COUNT=0,0,1;RAW_MQandDP=30661,21;ReadPosRankSum=-1.240;VarDP=21 GT:AD:DP:GQ:PL:SB 1:1,20,0:21:99:845,0,890:0,1,11,9 +chrX 4896775 . C . . END=4896933 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,655 +chrX 4896934 . A G, 1072.04 . AS_QUALapprox=|1082|0;AS_VarDP=0|32|0;DP=33;QUALapprox=1082;RAW_GT_COUNT=0,0,1;RAW_MQandDP=77217,33;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1082,0,1082:0,0,19,13 +chrX 4896935 . T . . END=4897125 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,634 +chrX 4897126 . C T, 923.04 . AS_QUALapprox=|933|0;AS_VarDP=0|28|0;DP=29;QUALapprox=933;RAW_GT_COUNT=0,0,1;RAW_MQandDP=91927,29;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:933,0,933:0,0,14,14 +chrX 4897127 . G . . END=4897402 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,625 +chrX 4897403 . G C, 914.04 . AS_QUALapprox=|924|0;AS_VarDP=0|28|0;DP=31;QUALapprox=924;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93061,31;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:924,0,924:0,0,13,15 +chrX 4897404 . T . . END=4897764 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,661 +chrX 4897765 . T G, 883.04 . AS_QUALapprox=|893|0;AS_VarDP=0|27|0;DP=27;QUALapprox=893;RAW_GT_COUNT=0,0,1;RAW_MQandDP=87139,27;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:893,0,893:0,0,15,12 +chrX 4897766 . G . . END=4898801 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,496 +chrX 4898802 . A G, 719.04 . AS_QUALapprox=|729|0;AS_VarDP=0|21|0;DP=21;QUALapprox=729;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75600,21;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:729,0,729:0,0,13,8 +chrX 4898803 . T . . END=4899391 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,690 +chrX 4899392 . C A, 928.04 . AS_QUALapprox=|938|0;AS_VarDP=0|29|0;DP=32;QUALapprox=938;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:938,0,938:0,0,12,17 +chrX 4899393 . C . . END=4899575 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,616 +chrX 4899576 . T C, 709.04 . AS_QUALapprox=|719|0;AS_VarDP=0|21|0;DP=21;QUALapprox=719;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75600,21;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:719,0,719:0,0,11,10 +chrX 4899577 . T . . END=4902041 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,581 +chrX 4902042 . CA C, 148.01 . AS_QUALapprox=|158|0;AS_VarDP=4|12|0;BaseQRankSum=-0.972;DP=31;MQRankSum=0.000;QUALapprox=158;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;ReadPosRankSum=-0.914;VarDP=16 GT:AD:DP:GQ:PL:SB 1:4,12,0:16:99:158,0,225:1,3,4,8 +chrX 4902044 . A . . END=4903287 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,555 +chrX 4903288 . A G, 1007.04 . AS_QUALapprox=|1017|0;AS_VarDP=0|31|0;DP=31;QUALapprox=1017;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1017,0,1017:0,0,21,10 +chrX 4903289 . G . . END=4903304 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,909 +chrX 4903305 . A G, 973.04 . AS_QUALapprox=|983|0;AS_VarDP=0|29|0;DP=30;QUALapprox=983;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:983,0,983:0,0,20,9 +chrX 4903306 . G . . END=4904665 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,506 +chrX 4904666 . C G, 605.04 . AS_QUALapprox=|615|0;AS_VarDP=0|19|0;DP=22;QUALapprox=615;RAW_GT_COUNT=0,0,1;RAW_MQandDP=78409,22;VarDP=19 GT:AD:DP:GQ:PL:SB 1:0,19,0:19:99:615,0,615:0,0,11,8 +chrX 4904667 . C . . END=4907451 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,522 +chrX 4907452 . C A, 1057.04 . AS_QUALapprox=|1067|0;AS_VarDP=0|33|0;DP=33;QUALapprox=1067;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1067,0,1067:0,0,15,18 +chrX 4907453 . C . . END=4908639 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,536 +chrX 4908640 . C CA,CAAA, 318.01 . AS_QUALapprox=|328|93|0;AS_VarDP=0|10|3|0;DP=32;QUALapprox=328;RAW_GT_COUNT=0,0,1;RAW_MQandDP=114272,32;VarDP=13 GT:AD:DP:GQ:PL:SB 1:0,10,3,0:13:99:328,0,235,310:0,0,8,5 +chrX 4908641 . A . . END=4908830 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,719 +chrX 4908831 . G A, 974.04 . AS_QUALapprox=|984|0;AS_VarDP=0|30|0;DP=31;QUALapprox=984;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:984,0,984:0,0,12,18 +chrX 4908832 . C . . END=4910328 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,610 +chrX 4910329 . T G, 1314.04 . AS_QUALapprox=|1324|0;AS_VarDP=0|42|0;DP=44;QUALapprox=1324;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158400,44;VarDP=42 GT:AD:DP:GQ:PL:SB 1:0,42,0:42:99:1324,0,1324:0,0,20,22 +chrX 4910330 . C . . END=4912011 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,549 +chrX 4912012 . C CA, 440.01 . AS_QUALapprox=|450|0;AS_VarDP=0|19|0;DP=23;QUALapprox=450;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;VarDP=19 GT:AD:DP:GQ:PL:SB 1:0,19,0:19:99:450,0,450:0,0,10,9 +chrX 4912013 . A . . END=4913204 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,526 +chrX 4913205 . CT C, 530.01 . AS_QUALapprox=|540|0;AS_VarDP=0|21|0;DP=32;QUALapprox=540;RAW_GT_COUNT=0,0,1;RAW_MQandDP=114516,32;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:540,0,540:0,0,6,15 +chrX 4913207 . T . . END=4913906 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,575 +chrX 4913907 . A AAC, 1203.01 . AS_QUALapprox=|1213|0;AS_VarDP=0|27|0;DP=28;QUALapprox=1213;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:1213,0,1214:0,0,14,13 +chrX 4913908 . A . . END=4915782 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,497 +chrX 4915783 . CA C, 622.01 . AS_QUALapprox=|632|0;AS_VarDP=0|24|0;DP=32;QUALapprox=632;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:632,0,632:0,0,14,10 +chrX 4915785 . A . . END=4919088 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,267 +chrX 4919089 . A C, 1237.04 . AS_QUALapprox=|1247|0;AS_VarDP=1|40|0;BaseQRankSum=-0.468;DP=41;MQRankSum=0.000;QUALapprox=1247;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147600,41;ReadPosRankSum=-0.592;VarDP=41 GT:AD:DP:GQ:PL:SB 1:1,40,0:41:99:1247,0,1282:0,1,19,21 +chrX 4919090 . G . . END=4928702 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,303 +chrX 4928703 . G GAC, 623.01 . AS_QUALapprox=|633|0;AS_VarDP=0|19|0;DP=21;QUALapprox=633;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75600,21;VarDP=19 GT:AD:DP:GQ:PL:SB 1:0,19,0:19:99:633,0,633:0,0,7,12 +chrX 4928704 . A . . END=4930148 GT:DP:GQ:MIN_DP:PL 0:27:45:27:0,45 +chrX 4930149 . A G, 984.04 . AS_QUALapprox=|994|0;AS_VarDP=0|23|0;DP=24;QUALapprox=994;RAW_GT_COUNT=0,0,1;RAW_MQandDP=83529,24;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:994,0,994:0,0,14,9 +chrX 4930150 . G . . END=4930152 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,684 +chrX 4930153 . C T, 1018.04 . AS_QUALapprox=|1028|0;AS_VarDP=0|24|0;DP=24;QUALapprox=1028;RAW_GT_COUNT=0,0,1;RAW_MQandDP=83178,24;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:1028,0,1028:0,0,15,9 +chrX 4930154 . G . . END=4930355 GT:DP:GQ:MIN_DP:PL 0:22:99:22:0,397 +chrX 4930356 . CAAAAAAA C, 199.01 . AS_QUALapprox=|209|0;AS_VarDP=3|6|0;BaseQRankSum=0.000;DP=23;MQRankSum=0.967;QUALapprox=209;RAW_GT_COUNT=0,0,1;RAW_MQandDP=77504,23;ReadPosRankSum=-1.068;VarDP=9 GT:AD:DP:GQ:PL:SB 1:3,6,0:9:99:209,0,272:1,2,5,1 +chrX 4930364 . A . . END=4933014 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,501 +chrX 4933015 . T C, 674.04 . AS_QUALapprox=|684|0;AS_VarDP=0|20|0;DP=22;QUALapprox=684;RAW_GT_COUNT=0,0,1;RAW_MQandDP=79200,22;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:684,0,684:0,0,8,12 +chrX 4933016 . A . . END=4933860 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,616 +chrX 4933861 . T C, 1073.04 . AS_QUALapprox=|1083|0;AS_VarDP=0|33|0;DP=34;QUALapprox=1083;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1083,0,1083:0,0,14,19 +chrX 4933862 . C . . END=4934423 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,630 +chrX 4934424 . G A, 770.04 . AS_QUALapprox=|780|0;AS_VarDP=0|23|0;DP=26;QUALapprox=780;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:780,0,780:0,0,12,11 +chrX 4934425 . C . . END=4934851 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,584 +chrX 4934852 . T G, 962.04 . AS_QUALapprox=|972|0;AS_VarDP=0|31|0;DP=34;QUALapprox=972;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:972,0,972:0,0,20,11 +chrX 4934853 . T . . END=4935578 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,497 +chrX 4935579 . T C, 784.04 . AS_QUALapprox=|794|0;AS_VarDP=0|26|0;DP=26;QUALapprox=794;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:794,0,794:0,0,13,13 +chrX 4935580 . G . . END=4936463 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,532 +chrX 4936464 . G C, 651.04 . AS_QUALapprox=|661|0;AS_VarDP=0|19|0;DP=19;QUALapprox=661;RAW_GT_COUNT=0,0,1;RAW_MQandDP=68400,19;VarDP=19 GT:AD:DP:GQ:PL:SB 1:0,19,0:19:99:661,0,661:0,0,7,12 +chrX 4936465 . T . . END=4939417 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,610 +chrX 4939418 . G A, 883.04 . AS_QUALapprox=|893|0;AS_VarDP=0|28|0;DP=28;QUALapprox=893;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:893,0,893:0,0,15,13 +chrX 4939419 . T . . END=4941050 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,447 +chrX 4941051 . G GA, 559.01 . AS_QUALapprox=|569|0;AS_VarDP=0|22|0;DP=28;QUALapprox=569;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100225,28;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:569,0,569:0,0,13,9 +chrX 4941052 . A . . END=4942155 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,581 +chrX 4942156 . TGATAGATA T, 826.01 . AS_QUALapprox=|836|0;AS_VarDP=0|19|0;DP=25;QUALapprox=836;RAW_GT_COUNT=0,0,1;RAW_MQandDP=88425,25;VarDP=19 GT:AD:DP:GQ:PL:SB 1:0,19,0:19:99:836,0,836:0,0,12,7 +chrX 4942165 . G . . END=4942213 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,700 +chrX 4942214 . CAGAT C, 655.01 . AS_QUALapprox=|665|0;AS_VarDP=0|15|0;DP=28;QUALapprox=665;RAW_GT_COUNT=0,0,1;RAW_MQandDP=99225,28;VarDP=15 GT:AD:DP:GQ:PL:SB 1:0,15,0:15:99:665,0,665:0,0,10,5 +chrX 4942219 . A . . END=4942589 GT:DP:GQ:MIN_DP:PL 0:19:99:19:0,422 +chrX 4942590 . C CA, 695.01 . AS_QUALapprox=|705|0;AS_VarDP=0|19|0;DP=20;QUALapprox=705;RAW_GT_COUNT=0,0,1;RAW_MQandDP=72000,20;VarDP=19 GT:AD:DP:GQ:PL:SB 1:0,19,0:19:99:705,0,705:0,0,10,9 +chrX 4942591 . A . . END=4943763 GT:DP:GQ:MIN_DP:PL 0:36:99:36:0,640 +chrX 4943764 . G A, 1150.04 . AS_QUALapprox=|1160|0;AS_VarDP=0|36|0;DP=36;QUALapprox=1160;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129600,36;VarDP=36 GT:AD:DP:GQ:PL:SB 1:0,36,0:36:99:1160,0,1160:0,0,18,18 +chrX 4943765 . T . . END=4943901 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,619 +chrX 4943902 . TA T, 546.01 . AS_QUALapprox=|556|0;AS_VarDP=0|21|0;DP=23;QUALapprox=556;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:556,0,556:0,0,10,11 +chrX 4943904 . A . . END=4944593 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,546 +chrX 4944594 . CA C, 575.01 . AS_QUALapprox=|585|0;AS_VarDP=0|18|0;DP=29;QUALapprox=585;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=18 GT:AD:DP:GQ:PL:SB 1:0,18,0:18:99:585,0,585:0,0,6,12 +chrX 4944596 . A . . END=4945624 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,700 +chrX 4945625 . T C, 788.04 . AS_QUALapprox=|798|0;AS_VarDP=0|26|0;DP=27;QUALapprox=798;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:798,0,798:0,0,8,18 +chrX 4945626 . G . . END=4946810 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,584 +chrX 4946811 . A G, 628.04 . AS_QUALapprox=|638|0;AS_VarDP=0|19|0;DP=21;QUALapprox=638;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75600,21;VarDP=19 GT:AD:DP:GQ:PL:SB 1:0,19,0:19:99:638,0,638:0,0,9,10 +chrX 4946812 . G . . END=4947266 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,501 +chrX 4947267 . T A, 774.04 . AS_QUALapprox=|784|0;AS_VarDP=0|24|0;DP=24;QUALapprox=784;RAW_GT_COUNT=0,0,1;RAW_MQandDP=84321,24;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:784,0,784:0,0,8,16 +chrX 4947268 . G . . END=4947776 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,676 +chrX 4947777 . A G, 952.04 . AS_QUALapprox=|962|0;AS_VarDP=0|30|0;DP=32;QUALapprox=962;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:962,0,962:0,0,13,17 +chrX 4947778 . T . . END=4948766 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,584 +chrX 4948767 . A G, 948.04 . AS_QUALapprox=|958|0;AS_VarDP=0|29|0;DP=29;QUALapprox=958;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:958,0,958:0,0,13,16 +chrX 4948768 . T . . END=4949064 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,753 +chrX 4949065 . G A, 754.04 . AS_QUALapprox=|764|0;AS_VarDP=0|24|0;DP=27;QUALapprox=764;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:764,0,764:0,0,11,13 +chrX 4949066 . A . . END=4949721 GT:DP:GQ:MIN_DP:PL 0:35:99:35:0,751 +chrX 4949722 . T C, 734.04 . AS_QUALapprox=|744|0;AS_VarDP=3|27|0;BaseQRankSum=1.127;DP=30;MQRankSum=0.000;QUALapprox=744;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;ReadPosRankSum=-1.279;VarDP=30 GT:AD:DP:GQ:PL:SB 1:3,27,0:30:99:744,0,828:2,1,7,20 +chrX 4949723 . G . . END=4950849 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,591 +chrX 4950850 . AT A, 166.01 . AS_QUALapprox=|176|0;AS_VarDP=4|12|0;BaseQRankSum=0.820;DP=29;MQRankSum=1.876;QUALapprox=176;RAW_GT_COUNT=0,0,1;RAW_MQandDP=101825,29;ReadPosRankSum=-1.215;VarDP=16 GT:AD:DP:GQ:PL:SB 1:4,12,0:16:99:176,0,242:3,1,5,7 +chrX 4950852 . T . . END=4952111 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,500 +chrX 4952112 . A G, 853.04 . AS_QUALapprox=|863|0;AS_VarDP=0|27|0;DP=29;QUALapprox=863;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:863,0,863:0,0,15,12 +chrX 4952113 . A . . END=4952997 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,511 +chrX 4952998 . CAAAAAAAAAA C, 438.01 . AS_QUALapprox=|448|0;AS_VarDP=3|11|0;BaseQRankSum=-0.381;DP=26;MQRankSum=2.089;QUALapprox=448;RAW_GT_COUNT=0,0,1;RAW_MQandDP=91600,26;ReadPosRankSum=-1.306;VarDP=14 GT:AD:DP:GQ:PL:SB 1:3,11,0:14:99:448,0,486:1,2,7,4 +chrX 4953009 . A . . END=4956844 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,526 +chrX 4956845 . G C, 1099.04 . AS_QUALapprox=|1109|0;AS_VarDP=0|35|0;DP=38;QUALapprox=1109;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,35,0:35:99:1109,0,1109:0,0,19,16 +chrX 4956846 . C . . END=4957015 GT:DP:GQ:MIN_DP:PL 0:46:99:46:0,1330 +chrX 4957016 . C T, 1367.04 . AS_QUALapprox=|1377|0;AS_VarDP=0|42|0;DP=43;QUALapprox=1377;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154800,43;VarDP=42 GT:AD:DP:GQ:PL:SB 1:0,42,0:42:99:1377,0,1377:0,0,18,24 +chrX 4957017 . T . . END=4959277 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,486 +chrX 4959278 . A T, 877.04 . AS_QUALapprox=|887|0;AS_VarDP=0|29|0;DP=29;QUALapprox=887;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:887,0,887:0,0,12,17 +chrX 4959279 . A . . END=4960636 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,437 +chrX 4960637 . CA C,CAAA, 201.01 . AS_QUALapprox=|211|0|0;AS_VarDP=0|13|3|0;DP=25;QUALapprox=211;RAW_GT_COUNT=0,0,1;RAW_MQandDP=88741,25;VarDP=16 GT:AD:DP:GQ:PL:SB 1:0,13,3,0:16:99:211,0,385,351:0,0,11,5 +chrX 4960639 . A . . END=4962193 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,610 +chrX 4962194 . CA C, 583.01 . AS_QUALapprox=|593|0;AS_VarDP=0|21|0;DP=25;QUALapprox=593;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:593,0,593:0,0,9,12 +chrX 4962196 . A . . END=4962622 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,362 +chrX 4962623 . A C, 1017.04 . AS_QUALapprox=|1027|0;AS_VarDP=0|33|0;DP=33;QUALapprox=1027;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1027,0,1027:0,0,17,16 +chrX 4962624 . A . . END=4964491 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,457 +chrX 4964492 . G GTT, 273.01 . AS_QUALapprox=|283|0;AS_VarDP=0|10|0;DP=15;QUALapprox=283;RAW_GT_COUNT=0,0,1;RAW_MQandDP=54000,15;VarDP=10 GT:AD:DP:GQ:PL:SB 1:0,10,0:10:99:283,0,283:0,0,7,3 +chrX 4964493 . T . . END=4964804 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,256 +chrX 4964805 . C T, 734.04 . AS_QUALapprox=|744|0;AS_VarDP=0|23|0;DP=25;QUALapprox=744;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:744,0,744:0,0,13,10 +chrX 4964806 . A . . END=4966046 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,495 +chrX 4966047 . C CAAACA, 833.01 . AS_QUALapprox=|843|0;AS_VarDP=0|19|0;DP=27;QUALapprox=843;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=19 GT:AD:DP:GQ:PL:SB 1:0,19,0:19:99:843,0,843:0,0,12,7 +chrX 4966048 . A . . END=4967152 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,710 +chrX 4967153 . T TATAG, 843.01 . AS_QUALapprox=|853|0;AS_VarDP=0|20|0;DP=31;QUALapprox=853;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:853,0,854:0,0,12,8 +chrX 4967154 . A . . END=4968690 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,516 +chrX 4968691 . A AT, 1095.01 . AS_QUALapprox=|1105|0;AS_VarDP=0|28|0;DP=30;QUALapprox=1105;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:1105,0,1105:0,0,16,12 +chrX 4968692 . A . . END=4969830 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,174 +chrX 4969831 . C CT, 1083.01 . AS_QUALapprox=|1093|0;AS_VarDP=0|38|0;DP=41;QUALapprox=1093;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147600,41;VarDP=38 GT:AD:DP:GQ:PL:SB 1:0,38,0:38:99:1093,0,1093:0,0,18,20 +chrX 4969832 . T . . END=4970941 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,758 +chrX 4970942 . G A, 1107.04 . AS_QUALapprox=|1117|0;AS_VarDP=0|33|0;DP=34;QUALapprox=1117;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1117,0,1117:0,0,13,20 +chrX 4970943 . G . . END=4972811 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,615 +chrX 4972812 . T TA, 656.01 . AS_QUALapprox=|666|0;AS_VarDP=0|23|0;DP=29;QUALapprox=666;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:666,0,666:0,0,6,17 +chrX 4972813 . A . . END=4973046 GT:DP:GQ:MIN_DP:PL 0:22:99:22:0,491 +chrX 4973047 . C G, 586.04 . AS_QUALapprox=|596|0;AS_VarDP=0|18|0;DP=18;QUALapprox=596;RAW_GT_COUNT=0,0,1;RAW_MQandDP=64800,18;VarDP=18 GT:AD:DP:GQ:PL:SB 1:0,18,0:18:99:596,0,596:0,0,12,6 +chrX 4973048 . G . . END=4973372 GT:DP:GQ:MIN_DP:PL 0:18:99:18:0,318 +chrX 4973373 . T C, 923.04 . AS_QUALapprox=|933|0;AS_VarDP=0|28|0;DP=30;QUALapprox=933;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:933,0,933:0,0,21,7 +chrX 4973374 . A . . END=4973591 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,793 +chrX 4973592 . C T, 1048.04 . AS_QUALapprox=|1058|0;AS_VarDP=0|31|0;DP=33;QUALapprox=1058;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1058,0,1058:0,0,17,14 +chrX 4973593 . C . . END=4973685 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,911 +chrX 4973686 . C G, 879.04 . AS_QUALapprox=|889|0;AS_VarDP=0|27|0;DP=28;QUALapprox=889;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:889,0,889:0,0,15,12 +chrX 4973687 . A . . END=4974026 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,755 +chrX 4974027 . T G, 1200.04 . AS_QUALapprox=|1210|0;AS_VarDP=0|40|0;DP=42;QUALapprox=1210;RAW_GT_COUNT=0,0,1;RAW_MQandDP=150516,42;VarDP=40 GT:AD:DP:GQ:PL:SB 1:0,40,0:40:99:1210,0,1210:0,0,20,20 +chrX 4974028 . G . . END=4974169 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,879 +chrX 4974170 . C G, 848.04 . AS_QUALapprox=|858|0;AS_VarDP=0|27|0;DP=29;QUALapprox=858;RAW_GT_COUNT=0,0,1;RAW_MQandDP=103825,29;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:858,0,858:0,0,13,14 +chrX 4974171 . T . . END=4974232 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,758 +chrX 4974233 . A G, 943.04 . AS_QUALapprox=|953|0;AS_VarDP=0|29|0;DP=29;QUALapprox=953;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:953,0,953:0,0,16,13 +chrX 4974234 . T . . END=4974506 GT:DP:GQ:MIN_DP:PL 0:37:99:37:0,824 +chrX 4974507 . T C, 1017.04 . AS_QUALapprox=|1027|0;AS_VarDP=0|31|0;DP=32;QUALapprox=1027;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1027,0,1027:0,0,15,16 +chrX 4974508 . A . . END=4975564 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,720 +chrX 4975565 . C G, 1018.04 . AS_QUALapprox=|1028|0;AS_VarDP=0|31|0;DP=32;QUALapprox=1028;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1028,0,1028:0,0,17,14 +chrX 4975566 . C . . END=4976497 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,561 +chrX 4976498 . A G, 641.04 . AS_QUALapprox=|651|0;AS_VarDP=0|19|0;DP=20;QUALapprox=651;RAW_GT_COUNT=0,0,1;RAW_MQandDP=72000,20;VarDP=19 GT:AD:DP:GQ:PL:SB 1:0,19,0:19:99:651,0,651:0,0,11,8 +chrX 4976499 . T . . END=4977166 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,556 +chrX 4977167 . A G, 856.04 . AS_QUALapprox=|866|0;AS_VarDP=0|27|0;DP=28;QUALapprox=866;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:866,0,866:0,0,11,16 +chrX 4977168 . A . . END=4977227 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,767 +chrX 4977228 . C G, 993.04 . AS_QUALapprox=|1003|0;AS_VarDP=0|30|0;DP=31;QUALapprox=1003;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:1003,0,1003:0,0,13,17 +chrX 4977229 . T . . END=4977424 GT:DP:GQ:MIN_DP:PL 0:38:99:38:0,974 +chrX 4977425 . A G, 1269.04 . AS_QUALapprox=|1279|0;AS_VarDP=0|40|0;DP=40;QUALapprox=1279;RAW_GT_COUNT=0,0,1;RAW_MQandDP=144000,40;VarDP=40 GT:AD:DP:GQ:PL:SB 1:0,40,0:40:99:1279,0,1279:0,0,23,17 +chrX 4977426 . A . . END=4977501 GT:DP:GQ:MIN_DP:PL 0:41:99:41:0,1140 +chrX 4977502 . T C, 1229.04 . AS_QUALapprox=|1239|0;AS_VarDP=0|41|0;DP=41;QUALapprox=1239;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147600,41;VarDP=41 GT:AD:DP:GQ:PL:SB 1:0,41,0:41:99:1239,0,1239:0,0,21,20 +chrX 4977503 . C . . END=4977941 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,561 +chrX 4977942 . G T, 481.04 . AS_QUALapprox=|491|0;AS_VarDP=0|15|0;DP=16;QUALapprox=491;RAW_GT_COUNT=0,0,1;RAW_MQandDP=57600,16;VarDP=15 GT:AD:DP:GQ:PL:SB 1:0,15,0:15:99:491,0,491:0,0,8,7 +chrX 4977943 . C . . END=4978397 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,328 +chrX 4978398 . G T, 1008.04 . AS_QUALapprox=|1018|0;AS_VarDP=0|31|0;DP=32;QUALapprox=1018;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1018,0,1018:0,0,16,15 +chrX 4978399 . T . . END=4978500 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,610 +chrX 4978501 . T G, 645.04 . AS_QUALapprox=|655|0;AS_VarDP=0|20|0;DP=20;QUALapprox=655;RAW_GT_COUNT=0,0,1;RAW_MQandDP=72000,20;VarDP=20 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:655,0,655:0,0,9,11 +chrX 4978502 . G . . END=4978738 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,620 +chrX 4978739 . G A, 1062.04 . AS_QUALapprox=|1072|0;AS_VarDP=0|32|0;DP=33;QUALapprox=1072;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1072,0,1072:0,0,17,15 +chrX 4978740 . C . . END=4978870 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,883 +chrX 4978871 . G C, 1412.04 . AS_QUALapprox=|1422|0;AS_VarDP=0|33|0;DP=33;QUALapprox=1422;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1422,0,1422:0,0,18,15 +chrX 4978872 . A . . END=4978892 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,987 +chrX 4978893 . C T, 1368.04 . AS_QUALapprox=|1378|0;AS_VarDP=0|32|0;DP=32;QUALapprox=1378;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1378,0,1378:0,0,15,17 +chrX 4978894 . T . . END=4979467 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,640 +chrX 4979468 . T C, 864.04 . AS_QUALapprox=|874|0;AS_VarDP=0|26|0;DP=29;QUALapprox=874;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:874,0,874:0,0,13,13 +chrX 4979469 . A . . END=4979709 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,898 +chrX 4979710 . G A, 1033.04 . AS_QUALapprox=|1043|0;AS_VarDP=0|30|0;DP=30;QUALapprox=1043;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:1043,0,1043:0,0,16,14 +chrX 4979711 . T . . END=4979737 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,929 +chrX 4979738 . A G, 894.04 . AS_QUALapprox=|904|0;AS_VarDP=0|26|0;DP=27;QUALapprox=904;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:904,0,904:0,0,14,12 +chrX 4979739 . A . . END=4980694 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,401 +chrX 4980695 . A AT, 590.01 . AS_QUALapprox=|600|0;AS_VarDP=0|19|0;DP=20;QUALapprox=600;RAW_GT_COUNT=0,0,1;RAW_MQandDP=72000,20;VarDP=19 GT:AD:DP:GQ:PL:SB 1:0,19,0:19:99:600,0,600:0,0,11,8 +chrX 4980696 . T . . END=4980991 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,561 +chrX 4980992 . A T, 874.04 . AS_QUALapprox=|884|0;AS_VarDP=0|26|0;DP=27;QUALapprox=884;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:884,0,884:0,0,10,16 +chrX 4980993 . A . . END=4981225 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,749 +chrX 4981226 . C T, 1017.04 . AS_QUALapprox=|1027|0;AS_VarDP=0|32|0;DP=33;QUALapprox=1027;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1027,0,1027:0,0,13,19 +chrX 4981227 . A . . END=4981318 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,809 +chrX 4981319 . G A, 864.04 . AS_QUALapprox=|874|0;AS_VarDP=0|26|0;DP=27;QUALapprox=874;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:874,0,874:0,0,9,17 +chrX 4981320 . A . . END=4981584 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,605 +chrX 4981585 . T C, 580.04 . AS_QUALapprox=|590|0;AS_VarDP=0|18|0;DP=18;QUALapprox=590;RAW_GT_COUNT=0,0,1;RAW_MQandDP=64225,18;VarDP=18 GT:AD:DP:GQ:PL:SB 1:0,18,0:18:99:590,0,590:0,0,10,8 +chrX 4981586 . A . . END=4981619 GT:DP:GQ:MIN_DP:PL 0:17:99:17:0,546 +chrX 4981620 . A G, 605.04 . AS_QUALapprox=|615|0;AS_VarDP=0|18|0;DP=18;QUALapprox=615;RAW_GT_COUNT=0,0,1;RAW_MQandDP=64225,18;VarDP=18 GT:AD:DP:GQ:PL:SB 1:0,18,0:18:99:615,0,615:0,0,11,7 +chrX 4981621 . G . . END=4981684 GT:DP:GQ:MIN_DP:PL 0:20:99:20:0,542 +chrX 4981685 . A T, 650.04 . AS_QUALapprox=|660|0;AS_VarDP=0|19|0;DP=19;QUALapprox=660;RAW_GT_COUNT=0,0,1;RAW_MQandDP=68400,19;VarDP=19 GT:AD:DP:GQ:PL:SB 1:0,19,0:19:99:660,0,660:0,0,12,7 +chrX 4981686 . A . . END=4981886 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,651 +chrX 4981887 . G A, 780.04 . AS_QUALapprox=|790|0;AS_VarDP=0|23|0;DP=23;QUALapprox=790;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:790,0,790:0,0,9,14 +chrX 4981888 . G . . END=4982091 GT:DP:GQ:MIN_DP:PL 0:27:99:27:0,724 +chrX 4982092 . C T, 729.04 . AS_QUALapprox=|739|0;AS_VarDP=0|23|0;DP=24;QUALapprox=739;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:739,0,739:0,0,13,10 +chrX 4982093 . T . . END=4982541 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,671 +chrX 4982542 . G A, 739.04 . AS_QUALapprox=|749|0;AS_VarDP=0|23|0;DP=23;QUALapprox=749;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:749,0,749:0,0,10,13 +chrX 4982543 . A . . END=4983080 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,571 +chrX 4983081 . A G, 873.04 . AS_QUALapprox=|883|0;AS_VarDP=0|27|0;DP=28;QUALapprox=883;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,27,0:27:99:883,0,883:0,0,9,18 +chrX 4983082 . A . . END=4983203 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,882 +chrX 4983204 . A G, 903.04 . AS_QUALapprox=|913|0;AS_VarDP=0|28|0;DP=31;QUALapprox=913;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:913,0,913:0,0,16,12 +chrX 4983205 . G . . END=4983486 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,739 +chrX 4983487 . G A, 780.04 . AS_QUALapprox=|790|0;AS_VarDP=0|23|0;DP=23;QUALapprox=790;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:790,0,790:0,0,9,14 +chrX 4983488 . T . . END=4984106 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,348 +chrX 4984107 . T C, 779.04 . AS_QUALapprox=|789|0;AS_VarDP=0|23|0;DP=23;QUALapprox=789;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:789,0,789:0,0,12,11 +chrX 4984108 . G . . END=4984190 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,645 +chrX 4984191 . T C, 749.04 . AS_QUALapprox=|759|0;AS_VarDP=0|23|0;DP=27;QUALapprox=759;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:759,0,759:0,0,10,13 +chrX 4984192 . C . . END=4984353 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,725 +chrX 4984354 . G A, 808.04 . AS_QUALapprox=|818|0;AS_VarDP=0|25|0;DP=26;QUALapprox=818;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:818,0,818:0,0,10,15 +chrX 4984355 . C . . END=4984451 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,784 +chrX 4984452 . C G, 893.04 . AS_QUALapprox=|903|0;AS_VarDP=0|26|0;DP=26;QUALapprox=903;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:903,0,903:0,0,14,12 +chrX 4984453 . A . . END=4984505 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,710 +chrX 4984506 . T C, 863.04 . AS_QUALapprox=|873|0;AS_VarDP=0|26|0;DP=27;QUALapprox=873;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:873,0,873:0,0,17,9 +chrX 4984507 . T . . END=4984536 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,770 +chrX 4984537 . C T, 824.04 . AS_QUALapprox=|834|0;AS_VarDP=0|24|0;DP=24;QUALapprox=834;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:834,0,834:0,0,18,6 +chrX 4984538 . G . . END=4984564 GT:DP:GQ:MIN_DP:PL 0:24:99:24:0,775 +chrX 4984565 . G C, 892.04 . AS_QUALapprox=|902|0;AS_VarDP=0|26|0;DP=31;QUALapprox=902;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:902,0,902:0,0,19,7 +chrX 4984566 . C . . END=4985029 GT:DP:GQ:MIN_DP:PL 0:32:99:32:0,872 +chrX 4985030 . C T, 924.04 . AS_QUALapprox=|934|0;AS_VarDP=1|28|0;BaseQRankSum=2.894;DP=29;MQRankSum=0.000;QUALapprox=934;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;ReadPosRankSum=1.136;VarDP=29 GT:AD:DP:GQ:PL:SB 1:1,28,0:29:99:934,0,943:0,1,10,18 +chrX 4985031 . G . . END=4986104 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,606 +chrX 4986105 . C A, 923.04 . AS_QUALapprox=|933|0;AS_VarDP=0|30|0;DP=30;QUALapprox=933;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:933,0,933:0,0,16,14 +chrX 4986106 . T . . END=4986676 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,180 +chrX 4986677 . A . . END=4986873 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 4986874 . G . . END=4986875 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 4986876 . G . . END=4986877 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 4986878 . T . . END=4986878 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 4986879 . T . . END=4986879 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 4986880 . C . . END=4986881 GT:DP:GQ:MIN_DP:PL 0:1:35:1:0,35 +chrX 4986882 . C . . END=4986885 GT:DP:GQ:MIN_DP:PL 0:1:0:1:0,0 +chrX 4986886 . T . . END=4986888 GT:DP:GQ:MIN_DP:PL 0:2:70:2:0,70 +chrX 4986889 . A . . END=4986892 GT:DP:GQ:MIN_DP:PL 0:2:0:2:0,0 +chrX 4986893 . G . . END=4986893 GT:DP:GQ:MIN_DP:PL 0:3:94:3:0,94 +chrX 4986894 . G . . END=4986898 GT:DP:GQ:MIN_DP:PL 0:4:0:4:0,0 +chrX 4986899 . G . . END=4986900 GT:DP:GQ:MIN_DP:PL 0:4:99:4:0,129 +chrX 4986901 . C . . END=4986901 GT:DP:GQ:MIN_DP:PL 0:4:0:4:0,0 +chrX 4986902 . T . . END=4986902 GT:DP:GQ:MIN_DP:PL 0:4:99:4:0,139 +chrX 4986903 . C . . END=4986905 GT:DP:GQ:MIN_DP:PL 0:5:0:5:0,0 +chrX 4986906 . T . . END=4986906 GT:DP:GQ:MIN_DP:PL 0:6:99:6:0,188 +chrX 4986907 . C . . END=4986907 GT:DP:GQ:MIN_DP:PL 0:6:0:6:0,0 +chrX 4986908 . T . . END=4986908 GT:DP:GQ:MIN_DP:PL 0:7:99:7:0,233 +chrX 4986909 . C . . END=4986914 GT:DP:GQ:MIN_DP:PL 0:8:0:8:0,0 +chrX 4986915 . C . . END=4986915 GT:DP:GQ:MIN_DP:PL 0:9:99:9:0,303 +chrX 4986916 . T . . END=4986918 GT:DP:GQ:MIN_DP:PL 0:10:0:10:0,0 +chrX 4986919 . T . . END=4986920 GT:DP:GQ:MIN_DP:PL 0:10:99:10:0,317 +chrX 4986921 . A . . END=4986921 GT:DP:GQ:MIN_DP:PL 0:10:0:10:0,0 +chrX 4986922 . T . . END=4986922 GT:DP:GQ:MIN_DP:PL 0:10:99:10:0,348 +chrX 4986923 . C . . END=4986926 GT:DP:GQ:MIN_DP:PL 0:10:0:10:0,0 +chrX 4986927 . C . . END=4986927 GT:DP:GQ:MIN_DP:PL 0:12:99:12:0,387 +chrX 4986928 . C . . END=4986931 GT:DP:GQ:MIN_DP:PL 0:12:0:12:0,0 +chrX 4986932 . T . . END=4986932 GT:DP:GQ:MIN_DP:PL 0:13:99:13:0,452 +chrX 4986933 . C . . END=4986940 GT:DP:GQ:MIN_DP:PL 0:16:0:16:0,0 +chrX 4986941 . C . . END=4986942 GT:DP:GQ:MIN_DP:PL 0:16:99:16:0,556 +chrX 4986943 . A . . END=4986943 GT:DP:GQ:MIN_DP:PL 0:17:0:17:0,0 +chrX 4986944 . A . . END=4986944 GT:DP:GQ:MIN_DP:PL 0:17:99:17:0,571 +chrX 4986945 . G . . END=4986946 GT:DP:GQ:MIN_DP:PL 0:17:0:17:0,0 +chrX 4986947 . G . . END=4986947 GT:DP:GQ:MIN_DP:PL 0:18:99:18:0,585 +chrX 4986948 . C . . END=4986949 GT:DP:GQ:MIN_DP:PL 0:18:0:18:0,0 +chrX 4986950 . G . . END=4986950 GT:DP:GQ:MIN_DP:PL 0:19:99:19:0,640 +chrX 4986951 . G . . END=4986961 GT:DP:GQ:MIN_DP:PL 0:19:0:19:0,0 +chrX 4986962 . G . . END=4986963 GT:DP:GQ:MIN_DP:PL 0:19:99:19:0,577 +chrX 4986964 . G . . END=4986964 GT:DP:GQ:MIN_DP:PL 0:19:0:19:0,0 +chrX 4986965 . A . . END=4986965 GT:DP:GQ:MIN_DP:PL 0:19:99:19:0,651 +chrX 4986966 . G . . END=4986968 GT:DP:GQ:MIN_DP:PL 0:19:0:19:0,0 +chrX 4986969 . A . . END=4986969 GT:DP:GQ:MIN_DP:PL 0:19:99:19:0,651 +chrX 4986970 . C . . END=4986973 GT:DP:GQ:MIN_DP:PL 0:20:0:20:0,0 +chrX 4986974 . G . . END=4986974 GT:DP:GQ:MIN_DP:PL 0:21:99:21:0,700 +chrX 4986975 . C . . END=4986981 GT:DP:GQ:MIN_DP:PL 0:21:0:21:0,0 +chrX 4986982 . T . . END=4988521 GT:DP:GQ:MIN_DP:PL 0:26:99:26:0,426 +chrX 4988522 . G C, 830.04 . AS_QUALapprox=|840|0;AS_VarDP=0|26|0;DP=26;QUALapprox=840;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:840,0,840:0,0,15,11 +chrX 4988523 . G . . END=4989097 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,219 +chrX 4989098 . TCCTCCTTC T, 486.01 . AS_QUALapprox=|496|0;AS_VarDP=0|11|0;DP=15;QUALapprox=496;RAW_GT_COUNT=0,0,1;RAW_MQandDP=54000,15;VarDP=11 GT:AD:DP:GQ:PL:SB 1:0,11,0:11:99:496,0,496:0,0,4,7 +chrX 4989107 . C . . END=4989694 GT:DP:GQ:MIN_DP:PL 0:19:99:19:0,100 +chrX 4989695 . T A, 1067.04 . AS_QUALapprox=|1077|0;AS_VarDP=0|33|0;DP=34;QUALapprox=1077;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,33,0:33:99:1077,0,1077:0,0,18,15 +chrX 4989696 . T . . END=4990001 GT:DP:GQ:MIN_DP:PL 0:28:99:28:0,450 +chrX 4990002 . G A, 953.04 . AS_QUALapprox=|963|0;AS_VarDP=0|28|0;DP=28;QUALapprox=963;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:963,0,963:0,0,17,11 +chrX 4990003 . A . . END=4990470 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,596 +chrX 4990471 . C CTTTG, 1295.01 . AS_QUALapprox=|1305|0;AS_VarDP=0|29|0;DP=31;QUALapprox=1305;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:1305,0,1305:0,0,13,16 +chrX 4990472 . T . . END=4990745 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,868 +chrX 4990746 . A T, 1092.04 . AS_QUALapprox=|1102|0;AS_VarDP=0|34|0;DP=35;QUALapprox=1102;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1102,0,1102:0,0,16,18 +chrX 4990747 . T . . END=4992039 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,575 +chrX 4992040 . T C, 864.04 . AS_QUALapprox=|874|0;AS_VarDP=0|26|0;DP=26;QUALapprox=874;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:874,0,874:0,0,9,17 +chrX 4992041 . C . . END=4992063 GT:DP:GQ:MIN_DP:PL 0:30:99:30:0,864 +chrX 4992064 . T A, 1016.04 . AS_QUALapprox=|1026|0;AS_VarDP=0|32|0;DP=34;QUALapprox=1026;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:1026,0,1026:0,0,14,18 +chrX 4992065 . G . . END=4992363 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,546 +chrX 4992364 . G T, 839.04 . AS_QUALapprox=|849|0;AS_VarDP=0|25|0;DP=25;QUALapprox=849;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:849,0,849:0,0,12,13 +chrX 4992365 . C . . END=4994147 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,411 +chrX 4994148 . G A, 977.04 . AS_QUALapprox=|987|0;AS_VarDP=0|31|0;DP=31;QUALapprox=987;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:987,0,987:0,0,12,19 +chrX 4994149 . C . . END=4995472 GT:DP:GQ:MIN_DP:PL 0:31:99:31:0,749 +chrX 4995473 . A G, 1000.04 . AS_QUALapprox=|1010|0;AS_VarDP=0|31|0;DP=32;QUALapprox=1010;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115081,32;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1010,0,1010:0,0,13,18 +chrX 4995474 . G . . END=4996386 GT:DP:GQ:MIN_DP:PL 0:33:99:33:0,828 +chrX 4996387 . T C, 928.04 . AS_QUALapprox=|938|0;AS_VarDP=0|29|0;DP=31;QUALapprox=938;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:938,0,938:0,0,13,16 +chrX 4996388 . G . . END=4998617 GT:DP:GQ:MIN_DP:PL 0:25:99:25:0,386 +chrX 4998618 . A G, 704.04 . AS_QUALapprox=|714|0;AS_VarDP=0|22|0;DP=23;QUALapprox=714;RAW_GT_COUNT=0,0,1;RAW_MQandDP=82800,23;VarDP=22 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:714,0,714:0,0,14,8 +chrX 4998619 . C . . END=4998971 GT:DP:GQ:MIN_DP:PL 0:29:99:29:0,655 +chrX 4998972 . TAATAAATA T, 473.01 . AS_QUALapprox=|483|0;AS_VarDP=0|11|0;DP=27;QUALapprox=483;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=11 GT:AD:DP:GQ:PL:SB 1:0,11,0:11:99:483,0,483:0,0,6,5 +chrX 4998981 . A . . END=5000000 GT:DP:GQ:MIN_DP:PL 0:23:99:23:0,422 diff --git a/src/test/resources/org/broadinstitute/hellbender/tools/walkers/GnarlyGenotyper/NA12891.chrX.haploid.rb.g.vcf.idx b/src/test/resources/org/broadinstitute/hellbender/tools/walkers/GnarlyGenotyper/NA12891.chrX.haploid.rb.g.vcf.idx new file mode 100644 index 00000000000..06b6775e823 Binary files /dev/null and b/src/test/resources/org/broadinstitute/hellbender/tools/walkers/GnarlyGenotyper/NA12891.chrX.haploid.rb.g.vcf.idx differ diff --git a/src/test/resources/org/broadinstitute/hellbender/tools/walkers/GnarlyGenotyper/NA12892.chrX.diploid.rb.g.vcf b/src/test/resources/org/broadinstitute/hellbender/tools/walkers/GnarlyGenotyper/NA12892.chrX.diploid.rb.g.vcf new file mode 100644 index 00000000000..b01babcdeca --- /dev/null +++ b/src/test/resources/org/broadinstitute/hellbender/tools/walkers/GnarlyGenotyper/NA12892.chrX.diploid.rb.g.vcf @@ -0,0 +1,35914 @@ +##fileformat=VCFv4.2 +##ALT= +##FILTER= +##FORMAT= +##FORMAT= +##FORMAT= 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C . . END=1000384 GT:DP:GQ:MIN_DP:PL 0/0:58:73:58:0,73,1191 +chrX 1000385 . A . . END=1000385 GT:DP:GQ:MIN_DP:PL 0/0:41:19:41:0,19,1136 +chrX 1000386 . C . . END=1000390 GT:DP:GQ:MIN_DP:PL 0/0:43:90:43:0,90,1306 +chrX 1000391 . C . . END=1000391 GT:DP:GQ:MIN_DP:PL 0/0:41:19:41:0,19,1157 +chrX 1000392 . A . . END=1000511 GT:DP:GQ:MIN_DP:PL 0/0:50:22:46:0,22,1198 +chrX 1000512 . G . . END=1000512 GT:DP:GQ:MIN_DP:PL 0/0:55:1:55:0,1,1453 +chrX 1000513 . A . . END=1000522 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,99,1485 +chrX 1000523 . AT A, 263.60 . AS_QUALapprox=|271|0;AS_VarDP=23|16|0;BaseQRankSum=-0.353;DP=52;MQRankSum=0.787;QUALapprox=271;RAW_GT_COUNT=0,1,0;RAW_MQandDP=178874,52;ReadPosRankSum=0.343;VarDP=39 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,16,0:39:99:0|1:1000523_AT_A:271,0,363,337,411,748:1000523:7,16,8,8 +chrX 1000524 . T *,A, 366.01 . AS_QUALapprox=|0|1953|0;AS_VarDP=0|16|23|0;DP=52;QUALapprox=2224;RAW_GT_COUNT=0,0,1;RAW_MQandDP=178874,52;VarDP=39 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 2|1:0,16,23,0:39:99:1|0:1000523_AT_A:2224,519,363,426,0,271,1629,512,421,1486:1000523:0,0,15,24 +chrX 1000525 . A . . END=1000526 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,108,1620 +chrX 1000527 . T A, 2325.06 . AS_QUALapprox=|2339|0;AS_VarDP=0|52|0;DP=52;QUALapprox=2339;RAW_GT_COUNT=0,0,1;RAW_MQandDP=178874,52;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,52,0:52:99:0|1:1000523_AT_A:2339,157,0,2339,157,2339:1000523:0,0,24,28 +chrX 1000528 . A . . END=1001209 GT:DP:GQ:MIN_DP:PL 0/0:52:45:48:0,45,1134 +chrX 1001210 . G . . END=1001210 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,1206 +chrX 1001211 . C . . END=1002154 GT:DP:GQ:MIN_DP:PL 0/0:54:28:49:0,28,1314 +chrX 1002155 . C T, 2074.06 . AS_QUALapprox=|2088|0;AS_VarDP=0|64|0;DP=66;QUALapprox=2088;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=64 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:2088,192,0,2088,192,2088:0,0,41,23 +chrX 1002156 . C . . END=1002418 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 1002419 . A G, 638.64 . AS_QUALapprox=|646|0;AS_VarDP=26|25|0;BaseQRankSum=-0.960;DP=54;MQRankSum=0.000;QUALapprox=646;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194049,54;ReadPosRankSum=-1.197;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:26,25,0:51:99:646,0,731,724,805,1530:13,13,16,9 +chrX 1002420 . C . . END=1003018 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,109,1778 +chrX 1003019 . T C, 1995.06 . AS_QUALapprox=|2009|0;AS_VarDP=0|63|0;DP=67;QUALapprox=2009;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=63 GT:AD:DP:GQ:PL:SB 1/1:0,63,0:63:99:2009,188,0,2009,188,2009:0,0,24,39 +chrX 1003020 . G . . END=1003440 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,116,1662 +chrX 1003441 . A G, 1420.06 . AS_QUALapprox=|1434|0;AS_VarDP=0|45|0;DP=47;QUALapprox=1434;RAW_GT_COUNT=0,0,1;RAW_MQandDP=166176,47;VarDP=45 GT:AD:DP:GQ:PL:SB 1/1:0,45,0:45:99:1434,135,0,1434,135,1434:0,0,22,23 +chrX 1003442 . A . . END=1003975 GT:DP:GQ:MIN_DP:PL 0/0:51:44:51:0,44,1241 +chrX 1003976 . G A, 477.64 . AS_QUALapprox=|485|0;AS_VarDP=33|19|0;BaseQRankSum=0.223;DP=53;MQRankSum=0.799;QUALapprox=485;RAW_GT_COUNT=0,1,0;RAW_MQandDP=188800,53;ReadPosRankSum=-0.257;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:33,19,0:52:99:485,0,935,583,992,1575:20,13,11,8 +chrX 1003977 . G . . END=1004322 GT:DP:GQ:MIN_DP:PL 0/0:53:60:53:0,60,1145 +chrX 1004323 . CTCTT C, 724.60 . AS_QUALapprox=|732|0;AS_VarDP=22|19|0;BaseQRankSum=1.720;DP=44;MQRankSum=0.000;QUALapprox=732;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=-0.556;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:22,19,0:41:99:732,0,856,798,913,1711:4,18,9,10 +chrX 1004328 . T . . END=1004380 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,107,1356 +chrX 1004381 . C CTCTT, 1819.03 . AS_QUALapprox=|1833|0;AS_VarDP=0|42|0;DP=47;QUALapprox=1833;RAW_GT_COUNT=0,0,1;RAW_MQandDP=167200,47;VarDP=42 GT:AD:DP:GQ:PL:SB 1/1:0,42,0:42:99:1833,126,0,1833,126,1833:0,0,18,24 +chrX 1004382 . T . . END=1004401 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,99,1369 +chrX 1004402 . C CTT,A, 1414.06 . AS_QUALapprox=|514|973|0;AS_VarDP=0|16|26|0;DP=49;QUALapprox=1431;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172400,49;VarDP=42 GT:AD:DP:GQ:PL:SB 1/2:0,16,26,0:42:99:1431,971,917,458,0,765,1460,986,671,1626:0,0,25,17 +chrX 1004403 . T . . END=1004406 GT:DP:GQ:MIN_DP:PL 0/0:47:84:47:0,84,1260 +chrX 1004407 . T TA, 976.60 . AS_QUALapprox=|984|0;AS_VarDP=22|28|0;BaseQRankSum=-1.565;DP=51;MQRankSum=1.641;QUALapprox=984;RAW_GT_COUNT=0,1,0;RAW_MQandDP=179600,51;ReadPosRankSum=0.280;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,28,0:50:99:0|1:1004407_T_TA:984,0,801,1050,884,1934:1004407:12,10,15,13 +chrX 1004408 . T . . END=1004411 GT:DP:GQ:MIN_DP:PL 0/0:47:90:47:0,90,1350 +chrX 1004412 . T TA, 829.60 . AS_QUALapprox=|837|0;AS_VarDP=22|24|0;BaseQRankSum=-0.827;DP=48;MQRankSum=1.525;QUALapprox=837;RAW_GT_COUNT=0,1,0;RAW_MQandDP=168800,48;ReadPosRankSum=1.023;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,24,0:46:99:0|1:1004407_T_TA:837,0,813,903,884,1786:1004407:12,10,15,9 +chrX 1004413 . T . . END=1004419 GT:DP:GQ:MIN_DP:PL 0/0:56:49:56:0,49,1599 +chrX 1004420 . A . . END=1004422 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,854 +chrX 1004423 . A . . END=1004901 GT:DP:GQ:MIN_DP:PL 0/0:56:55:56:0,55,1166 +chrX 1004902 . T TAAG, 1442.60 . AS_QUALapprox=|1450|0;AS_VarDP=31|37|0;BaseQRankSum=0.971;DP=74;MQRankSum=0.000;QUALapprox=1450;RAW_GT_COUNT=0,1,0;RAW_MQandDP=266400,74;ReadPosRankSum=0.794;VarDP=68 GT:AD:DP:GQ:PL:SB 0/1:31,37,0:68:99:1450,0,1191,1543,1302,2845:19,12,18,19 +chrX 1004903 . A . . END=1005165 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,110,1579 +chrX 1005166 . T C, 694.64 . AS_QUALapprox=|702|0;AS_VarDP=24|25|0;BaseQRankSum=0.933;DP=50;MQRankSum=0.000;QUALapprox=702;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=1.381;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:24,25,0:49:99:702,0,646,774,721,1495:9,15,11,14 +chrX 1005167 . A . . END=1005287 GT:DP:GQ:MIN_DP:PL 0/0:57:95:57:0,95,1449 +chrX 1005288 . G C, 675.64 . AS_QUALapprox=|683|0;AS_VarDP=30|27|0;BaseQRankSum=2.717;DP=59;MQRankSum=-1.479;QUALapprox=683;RAW_GT_COUNT=0,1,0;RAW_MQandDP=210717,59;ReadPosRankSum=0.831;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:30,27,0:57:99:683,0,652,773,733,1505:16,14,13,14 +chrX 1005289 . G . . END=1005395 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1005396 . G T, 783.64 . AS_QUALapprox=|791|0;AS_VarDP=28|31|0;BaseQRankSum=-2.005;DP=61;MQRankSum=-0.916;QUALapprox=791;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216916,61;ReadPosRankSum=1.230;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:28,31,0:59:99:791,0,742,875,834,1709:18,10,16,15 +chrX 1005397 . A . . END=1005627 GT:DP:GQ:MIN_DP:PL 0/0:32:38:31:0,38,875 +chrX 1005628 . CAAAAAAAAAA C,CAAAA, 698.02 . AS_QUALapprox=|547|257|0;AS_VarDP=4|14|6|0;DP=48;MQRankSum=2.499;QUALapprox=715;RAW_GT_COUNT=0,0,1;RAW_MQandDP=152466,48;VarDP=24 GT:AD:DP:GQ:PL:SB 1/2:4,14,6,0:24:99:715,168,598,458,0,500,743,461,560,995:0,4,14,6 +chrX 1005639 . A . . END=1005718 GT:DP:GQ:MIN_DP:PL 0/0:44:86:44:0,86,1212 +chrX 1005719 . T C, 1328.06 . AS_QUALapprox=|1342|0;AS_VarDP=0|43|0;DP=45;QUALapprox=1342;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162000,45;VarDP=43 GT:AD:DP:GQ:PL:SB 1/1:0,43,0:43:99:1342,127,0,1342,127,1342:0,0,25,18 +chrX 1005720 . G . . END=1006052 GT:DP:GQ:MIN_DP:PL 0/0:65:52:65:0,52,1299 +chrX 1006053 . T TGC, 514.60 . AS_QUALapprox=|522|0;AS_VarDP=26|19|0;BaseQRankSum=1.076;DP=55;MQRankSum=0.000;QUALapprox=522;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=2.231;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:26,19,0:45:99:522,0,933,601,991,1591:11,15,13,6 +chrX 1006054 . G . . END=1006056 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 1006057 . C T,CGTGT, 856.64 . AS_QUALapprox=|864|233|0;AS_VarDP=18|19|0|0;BaseQRankSum=1.157;DP=54;MQRankSum=0.000;QUALapprox=864;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=1.794;VarDP=37 GT:AD:DP:GQ:PL:SB 0/1:18,19,0,0:37:99:864,0,918,631,741,1392,816,888,1428,1662:6,12,13,6 +chrX 1006058 . G . . END=1006319 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1674 +chrX 1006320 . T C, 919.64 . AS_QUALapprox=|927|0;AS_VarDP=31|34|0;BaseQRankSum=1.192;DP=67;MQRankSum=0.000;QUALapprox=927;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=-0.013;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:31,34,0:65:99:927,0,762,1019,865,1884:13,18,21,13 +chrX 1006321 . A . . END=1006331 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1006332 . C A, 878.64 . AS_QUALapprox=|886|0;AS_VarDP=36|34|0;BaseQRankSum=0.435;DP=71;MQRankSum=0.000;QUALapprox=886;RAW_GT_COUNT=0,1,0;RAW_MQandDP=255600,71;ReadPosRankSum=0.300;VarDP=70 GT:AD:DP:GQ:PL:SB 0/1:36,34,0:70:99:886,0,935,994,1037,2031:22,14,15,19 +chrX 1006333 . T . . END=1006460 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,120,1800 +chrX 1006461 . T A, 941.64 . AS_QUALapprox=|949|0;AS_VarDP=31|35|0;BaseQRankSum=-0.615;DP=68;MQRankSum=0.000;QUALapprox=949;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=1.260;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:31,35,0:66:99:949,0,807,1041,913,1954:19,12,22,13 +chrX 1006462 . C . . END=1006607 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1006608 . T G, 1396.64 . AS_QUALapprox=|1404|0;AS_VarDP=32|36|0;BaseQRankSum=-0.388;DP=68;MQRankSum=0.000;QUALapprox=1404;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=-0.824;VarDP=68 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:32,36,0:68:99:0|1:1006608_T_G:1404,0,1162,1500,1271,2771:1006608:12,20,17,19 +chrX 1006609 . T . . END=1006623 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1006624 . T C, 1396.64 . AS_QUALapprox=|1404|0;AS_VarDP=32|36|0;BaseQRankSum=0.203;DP=68;MQRankSum=0.000;QUALapprox=1404;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=1.208;VarDP=68 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:32,36,0:68:99:0|1:1006608_T_G:1404,0,1163,1500,1271,2771:1006608:11,21,18,18 +chrX 1006625 . A . . END=1006954 GT:DP:GQ:MIN_DP:PL 0/0:71:90:71:0,90,1485 +chrX 1006955 . T . . END=1006957 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,694 +chrX 1006958 . T TA, 1185.03 . AS_QUALapprox=|1199|0;AS_VarDP=0|34|0;DP=51;QUALapprox=1199;RAW_GT_COUNT=0,0,1;RAW_MQandDP=178137,51;VarDP=34 GT:AD:DP:GQ:PL:SB 1/1:0,34,0:34:99:1199,101,0,1200,102,1200:0,0,13,21 +chrX 1006959 . T TTA,TTATTA,TTTATTA,TTTATTATTA, 1458.02 . AS_QUALapprox=|771|1159|227|75|0;AS_VarDP=0|10|19|0|0|0;DP=51;QUALapprox=1475;RAW_GT_COUNT=0,0,1;RAW_MQandDP=178137,51;VarDP=29 GT:AD:DP:GQ:PL:SB 1/2:0,10,19,0,0,0:29:99:1475,789,704,410,0,316,1248,705,416,1584,1400,782,442,1605,1784,1411,803,443,1451,1581,1557:0,0,10,19 +chrX 1006960 . T . . END=1007008 GT:DP:GQ:MIN_DP:PL 0/0:46:93:46:0,93,1395 +chrX 1007009 . T C, 693.64 . AS_QUALapprox=|701|0;AS_VarDP=19|27|0;BaseQRankSum=-2.360;DP=47;MQRankSum=-0.795;QUALapprox=701;RAW_GT_COUNT=0,1,0;RAW_MQandDP=166896,47;ReadPosRankSum=0.312;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:19,27,0:46:99:701,0,523,758,603,1361:7,12,14,13 +chrX 1007010 . G . . END=1007017 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,118,1420 +chrX 1007018 . A G, 1743.06 . AS_QUALapprox=|1757|0;AS_VarDP=0|46|0;DP=49;QUALapprox=1757;RAW_GT_COUNT=0,0,1;RAW_MQandDP=174096,49;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1757,137,0,1757,137,1757:0,0,20,26 +chrX 1007019 . C . . END=1007080 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,117,1504 +chrX 1007081 . A G, 576.64 . AS_QUALapprox=|584|0;AS_VarDP=22|23|0;BaseQRankSum=-2.490;DP=49;MQRankSum=0.000;QUALapprox=584;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=1.522;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:22,23,0:45:99:584,0,618,650,687,1338:11,11,10,13 +chrX 1007082 . G . . END=1007311 GT:DP:GQ:MIN_DP:PL 0/0:50:94:50:0,94,1445 +chrX 1007312 . A G, 613.64 . AS_QUALapprox=|621|0;AS_VarDP=26|25|0;BaseQRankSum=-1.419;DP=55;MQRankSum=0.000;QUALapprox=621;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-1.499;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:26,25,0:51:99:621,0,707,699,782,1481:12,14,13,12 +chrX 1007313 . A . . END=1007423 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1007424 . C T, 2154.06 . AS_QUALapprox=|2168|0;AS_VarDP=1|68|0;BaseQRankSum=2.267;DP=74;MQRankSum=0.000;QUALapprox=2168;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;ReadPosRankSum=1.055;VarDP=69 GT:AD:DP:GQ:PL:SB 1/1:1,68,0:69:99:2168,197,0,2171,204,2178:1,0,40,28 +chrX 1007425 . A . . END=1007488 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 1007489 . G T, 773.64 . AS_QUALapprox=|781|0;AS_VarDP=30|29|0;BaseQRankSum=0.766;DP=64;MQRankSum=0.000;QUALapprox=781;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=-0.061;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:30,29,0:59:99:781,0,812,871,898,1769:20,10,20,9 +chrX 1007490 . G . . END=1007504 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1007505 . G C, 830.64 . AS_QUALapprox=|838|0;AS_VarDP=37|32|0;BaseQRankSum=2.696;DP=71;MQRankSum=0.000;QUALapprox=838;RAW_GT_COUNT=0,1,0;RAW_MQandDP=254916,71;ReadPosRankSum=0.193;VarDP=69 GT:AD:DP:GQ:PL:SB 0/1:37,32,0:69:99:838,0,845,947,941,1887:23,14,23,9 +chrX 1007506 . A . . END=1007654 GT:DP:GQ:MIN_DP:PL 0/0:73:99:73:0,120,1800 +chrX 1007655 . C T, 2411.06 . AS_QUALapprox=|2425|0;AS_VarDP=0|72|0;DP=76;QUALapprox=2425;RAW_GT_COUNT=0,0,1;RAW_MQandDP=273600,76;VarDP=72 GT:AD:DP:GQ:PL:SB 1/1:0,72,0:72:99:2425,216,0,2425,216,2425:0,0,27,45 +chrX 1007656 . C . . END=1007667 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 1007668 . G A, 2331.06 . AS_QUALapprox=|2345|0;AS_VarDP=0|70|0;DP=72;QUALapprox=2345;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;VarDP=70 GT:AD:DP:GQ:PL:SB 1/1:0,70,0:70:99:2345,210,0,2345,210,2345:0,0,27,43 +chrX 1007669 . G . . END=1007714 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 1007715 . G A, 927.64 . AS_QUALapprox=|935|0;AS_VarDP=31|37|0;BaseQRankSum=-1.167;DP=68;MQRankSum=0.000;QUALapprox=935;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=0.425;VarDP=68 GT:AD:DP:GQ:PL:SB 0/1:31,37,0:68:99:935,0,800,1029,911,1939:8,23,15,22 +chrX 1007716 . G . . END=1007786 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 1007787 . T C, 794.64 . AS_QUALapprox=|802|0;AS_VarDP=31|29|0;BaseQRankSum=1.266;DP=61;MQRankSum=0.000;QUALapprox=802;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-0.984;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:31,29,0:60:99:802,0,856,895,942,1837:10,21,10,19 +chrX 1007788 . T . . END=1007800 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1007801 . A G, 2166.06 . AS_QUALapprox=|2180|0;AS_VarDP=0|58|0;DP=58;QUALapprox=2180;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=58 GT:AD:DP:GQ:PL:SB 1/1:0,58,0:58:99:2180,174,0,2180,174,2180:0,0,21,37 +chrX 1007802 . G . . END=1007873 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,105,1583 +chrX 1007874 . CT C, 2014.03 . AS_QUALapprox=|2028|0;AS_VarDP=0|47|0;DP=49;QUALapprox=2028;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,47,0:47:99:0|1:1007874_CT_C:2028,141,0,2028,141,2028:1007874:0,0,29,18 +chrX 1007876 . T . . END=1007877 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,120,1800 +chrX 1007878 . T C, 2139.06 . AS_QUALapprox=|2153|0;AS_VarDP=0|50|0;DP=50;QUALapprox=2153;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,50,0:50:99:0|1:1007874_CT_C:2153,150,0,2153,150,2153:1007874:0,0,30,20 +chrX 1007879 . T . . END=1007892 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 1007893 . T G, 548.64 . AS_QUALapprox=|556|0;AS_VarDP=30|23|0;BaseQRankSum=-1.289;DP=54;MQRankSum=0.000;QUALapprox=556;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=0.503;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:30,23,0:53:99:556,0,1097,646,1165,1811:18,12,11,12 +chrX 1007894 . T . . END=1007915 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 1007916 . C A, 665.64 . AS_QUALapprox=|673|0;AS_VarDP=24|26|0;BaseQRankSum=-1.034;DP=52;MQRankSum=0.000;QUALapprox=673;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=0.330;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:24,26,0:50:99:673,0,814,745,892,1637:13,11,14,12 +chrX 1007917 . C . . END=1008001 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,108,1538 +chrX 1008002 . C G, 657.64 . AS_QUALapprox=|665|0;AS_VarDP=27|26|0;BaseQRankSum=-0.498;DP=56;MQRankSum=0.000;QUALapprox=665;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=1.086;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:27,26,0:53:99:665,0,690,745,768,1513:15,12,13,13 +chrX 1008003 . A . . END=1008066 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,114,1710 +chrX 1008067 . G A, 850.64 . AS_QUALapprox=|858|0;AS_VarDP=25|23|0;BaseQRankSum=-0.666;DP=49;MQRankSum=1.001;QUALapprox=858;RAW_GT_COUNT=0,1,0;RAW_MQandDP=175201,49;ReadPosRankSum=-0.165;VarDP=48 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,23,0:48:99:0|1:1008067_G_A:858,0,929,933,998,1931:1008067:12,13,15,8 +chrX 1008068 . G . . END=1008074 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,113,1349 +chrX 1008075 . C T, 832.64 . AS_QUALapprox=|840|0;AS_VarDP=27|23|0;BaseQRankSum=-0.736;DP=51;MQRankSum=0.963;QUALapprox=840;RAW_GT_COUNT=0,1,0;RAW_MQandDP=182401,51;ReadPosRankSum=1.086;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,23,0:50:99:0|1:1008067_G_A:840,0,991,921,1060,1982:1008067:13,14,14,9 +chrX 1008076 . C . . END=1008119 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,106,1424 +chrX 1008120 . A G, 1678.06 . AS_QUALapprox=|1692|0;AS_VarDP=0|53|0;DP=56;QUALapprox=1692;RAW_GT_COUNT=0,0,1;RAW_MQandDP=200401,56;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1692,159,0,1692,159,1692:0,0,27,26 +chrX 1008121 . C . . END=1008156 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 1008157 . G A, 2444.06 . AS_QUALapprox=|2458|0;AS_VarDP=0|56|0;DP=57;QUALapprox=2458;RAW_GT_COUNT=0,0,1;RAW_MQandDP=204001,57;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,56,0:56:99:0|1:1008157_G_A:2458,169,0,2458,169,2458:1008157:0,0,27,29 +chrX 1008158 . T . . END=1008168 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 1008169 . G T, 2468.06 . AS_QUALapprox=|2482|0;AS_VarDP=0|58|0;DP=59;QUALapprox=2482;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=58 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,58,0:58:99:0|1:1008157_G_A:2482,174,0,2482,174,2482:1008157:0,0,30,28 +chrX 1008170 . C . . END=1008652 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,103,1365 +chrX 1008653 . C T, 904.64 . AS_QUALapprox=|912|0;AS_VarDP=28|32|0;BaseQRankSum=1.747;DP=60;MQRankSum=0.000;QUALapprox=912;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=-0.808;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:28,32,0:60:99:912,0,717,996,813,1809:13,15,19,13 +chrX 1008654 . G . . END=1009310 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,102,1800 +chrX 1009311 . C T, 2056.06 . AS_QUALapprox=|2070|0;AS_VarDP=0|63|0;DP=63;QUALapprox=2070;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=63 GT:AD:DP:GQ:PL:SB 1/1:0,63,0:63:99:2070,189,0,2070,189,2070:0,0,34,29 +chrX 1009312 . G . . END=1010107 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1010108 . A G, 1895.06 . AS_QUALapprox=|1909|0;AS_VarDP=0|61|0;DP=62;QUALapprox=1909;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=61 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:1909,182,0,1909,182,1909:0,0,26,35 +chrX 1010109 . G . . END=1010341 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 1010342 . G T, 980.64 . AS_QUALapprox=|988|0;AS_VarDP=32|36|0;BaseQRankSum=1.770;DP=74;MQRankSum=-0.913;QUALapprox=988;RAW_GT_COUNT=0,1,0;RAW_MQandDP=264825,74;ReadPosRankSum=-0.068;VarDP=68 GT:AD:DP:GQ:PL:SB 0/1:32,36,0:68:99:988,0,768,1083,876,1960:15,17,13,23 +chrX 1010343 . C . . END=1010431 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 1010432 . G A, 373.64 . AS_QUALapprox=|381|0;AS_VarDP=32|15|0;BaseQRankSum=1.011;DP=48;MQRankSum=0.000;QUALapprox=381;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=-1.552;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:32,15,0:47:99:381,0,921,476,967,1443:10,22,3,12 +chrX 1010433 . G . . END=1010481 GT:DP:GQ:MIN_DP:PL 0/0:37:54:37:0,54,810 +chrX 1010482 . G . . END=1010482 GT:DP:GQ:MIN_DP:PL 0/0:27:12:27:0,12,769 +chrX 1010483 . A . . END=1010494 GT:DP:GQ:MIN_DP:PL 0/0:28:66:28:0,66,990 +chrX 1010495 . G A, 130.64 . AS_QUALapprox=|138|0;AS_VarDP=22|7|0;BaseQRankSum=0.227;DP=32;MQRankSum=0.645;QUALapprox=138;RAW_GT_COUNT=0,1,0;RAW_MQandDP=113200,32;ReadPosRankSum=-0.841;VarDP=29 GT:AD:DP:GQ:PL:SB 0/1:22,7,0:29:99:138,0,558,202,579,782:9,13,5,2 +chrX 1010496 . C . . END=1010651 GT:DP:GQ:MIN_DP:PL 0/0:42:22:39:0,22,1137 +chrX 1010652 . A T, 342.64 . AS_QUALapprox=|350|0;AS_VarDP=27|15|0;BaseQRankSum=-0.192;DP=49;MQRankSum=0.000;QUALapprox=350;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=-2.298;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:27,15,0:42:99:350,0,763,432,807,1239:7,20,7,8 +chrX 1010653 . C . . END=1010886 GT:DP:GQ:MIN_DP:PL 0/0:51:76:51:0,76,1028 +chrX 1010887 . C G, 685.64 . AS_QUALapprox=|693|0;AS_VarDP=13|24|0;BaseQRankSum=1.360;DP=38;MQRankSum=0.000;QUALapprox=693;RAW_GT_COUNT=0,1,0;RAW_MQandDP=136800,38;ReadPosRankSum=-2.135;VarDP=37 GT:AD:DP:GQ:PL:SB 0/1:13,24,0:37:99:693,0,299,732,372,1103:4,9,20,4 +chrX 1010888 . G . . END=1011066 GT:DP:GQ:MIN_DP:PL 0/0:55:91:55:0,91,1148 +chrX 1011067 . A G, 824.64 . AS_QUALapprox=|832|0;AS_VarDP=28|32|0;BaseQRankSum=-0.155;DP=63;MQRankSum=0.000;QUALapprox=832;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=0.630;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:28,32,0:60:99:832,0,734,917,829,1746:15,13,15,17 +chrX 1011068 . C . . END=1011340 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 1011341 . C T, 1138.64 . AS_QUALapprox=|1146|0;AS_VarDP=31|31|0;BaseQRankSum=0.067;DP=67;MQRankSum=0.023;QUALapprox=1146;RAW_GT_COUNT=0,1,0;RAW_MQandDP=236100,67;ReadPosRankSum=-0.584;VarDP=62 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:31,31,0:62:99:0|1:1011341_C_T:1146,0,1162,1239,1255,2494:1011341:19,12,15,16 +chrX 1011342 . G . . END=1011344 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1011345 . C T, 1107.64 . AS_QUALapprox=|1115|0;AS_VarDP=31|30|0;BaseQRankSum=0.435;DP=61;MQRankSum=0.000;QUALapprox=1115;RAW_GT_COUNT=0,1,0;RAW_MQandDP=215600,61;ReadPosRankSum=0.118;VarDP=61 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:31,30,0:61:99:0|1:1011341_C_T:1115,0,1165,1208,1255,2463:1011341:19,12,15,15 +chrX 1011346 . G . . END=1011443 GT:DP:GQ:MIN_DP:PL 0/0:54:54:54:0,54,1333 +chrX 1011444 . G . . END=1011485 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,858 +chrX 1011486 . G GA, 346.60 . AS_QUALapprox=|354|0;AS_VarDP=25|18|0;BaseQRankSum=0.077;DP=57;MQRankSum=-0.220;QUALapprox=354;RAW_GT_COUNT=0,1,0;RAW_MQandDP=197440,57;ReadPosRankSum=0.099;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:25,18,0:43:99:354,0,567,492,700,1563:13,12,13,5 +chrX 1011487 . A . . END=1011522 GT:DP:GQ:MIN_DP:PL 0/0:56:0:56:0,0,1081 +chrX 1011523 . A G, 1436.06 . AS_QUALapprox=|1450|0;AS_VarDP=0|47|0;DP=61;QUALapprox=1450;RAW_GT_COUNT=0,0,1;RAW_MQandDP=211105,61;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1450,140,0,1561,153,1895:0,0,26,21 +chrX 1011524 . G . . END=1011543 GT:DP:GQ:MIN_DP:PL 0/0:56:0:56:0,0,1115 +chrX 1011544 . C . . END=1011585 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 1011586 . G A, 675.64 . AS_QUALapprox=|683|0;AS_VarDP=31|26|0;BaseQRankSum=1.642;DP=59;MQRankSum=-0.075;QUALapprox=683;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208965,59;ReadPosRankSum=-1.178;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:31,26,0:57:99:683,0,771,775,849,1625:17,14,10,16 +chrX 1011587 . G . . END=1011617 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 1011618 . T C, 507.64 . AS_QUALapprox=|515|0;AS_VarDP=32|23|0;BaseQRankSum=-1.084;DP=58;MQRankSum=-0.184;QUALapprox=515;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205365,58;ReadPosRankSum=0.367;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:32,23,0:55:99:515,0,838,611,907,1517:17,15,10,13 +chrX 1011619 . A . . END=1011657 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 1011658 . GA G, 506.60 . AS_QUALapprox=|514|0;AS_VarDP=27|22|0;BaseQRankSum=-2.224;DP=55;MQRankSum=-1.067;QUALapprox=514;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194893,55;ReadPosRankSum=-0.031;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:27,22,0:49:99:514,0,638,595,704,1299:15,12,8,14 +chrX 1011660 . A . . END=1011733 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 1011734 . A G, 932.64 . AS_QUALapprox=|940|0;AS_VarDP=37|35|0;BaseQRankSum=1.536;DP=74;MQRankSum=0.000;QUALapprox=940;RAW_GT_COUNT=0,1,0;RAW_MQandDP=266400,74;ReadPosRankSum=2.029;VarDP=72 GT:AD:DP:GQ:PL:SB 0/1:37,35,0:72:99:940,0,935,1051,1040,2091:17,20,18,17 +chrX 1011735 . T . . END=1012151 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1012152 . G A, 938.64 . AS_QUALapprox=|946|0;AS_VarDP=31|33|0;BaseQRankSum=3.103;DP=69;MQRankSum=0.000;QUALapprox=946;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=-0.820;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:31,33,0:64:99:946,0,741,1038,840,1878:17,14,18,15 +chrX 1012153 . T . . END=1012189 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,106,1800 +chrX 1012190 . A G,T, 1200.64 . AS_QUALapprox=|1208|385|0;AS_VarDP=36|30|2|0;BaseQRankSum=-1.155;DP=69;MQRankSum=0.000;QUALapprox=1208;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=0.998;VarDP=68 GT:AD:DP:GQ:PL:SB 0/1:36,30,2,0:68:99:1208,0,1371,823,1431,2204,1134,1469,2276,2535:15,21,17,15 +chrX 1012191 . T . . END=1012194 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 1012195 . AAATG A, 1269.60 . AS_QUALapprox=|1277|0;AS_VarDP=35|34|0;BaseQRankSum=0.854;DP=71;MQRankSum=0.000;QUALapprox=1277;RAW_GT_COUNT=0,1,0;RAW_MQandDP=255600,71;ReadPosRankSum=0.755;VarDP=69 GT:AD:DP:GQ:PL:SB 0/1:35,34,0:69:99:1277,0,1347,1383,1449,2832:15,20,19,15 +chrX 1012200 . A . . END=1012402 GT:DP:GQ:MIN_DP:PL 0/0:73:42:35:0,42,908 +chrX 1012403 . T . . END=1012403 GT:DP:GQ:MIN_DP:PL 0/0:73:0:73:0,0,44 +chrX 1012404 . T . . END=1012441 GT:DP:GQ:MIN_DP:PL 0/0:79:99:79:0,120,1800 +chrX 1012442 . G . . END=1012442 GT:DP:GQ:MIN_DP:PL 0/0:80:0:80:0,0,0 +chrX 1012443 . T . . END=1012451 GT:DP:GQ:MIN_DP:PL 0/0:79:47:79:0,47,1800 +chrX 1012452 . C . . END=1012452 GT:DP:GQ:MIN_DP:PL 0/0:64:0:64:0,0,1438 +chrX 1012453 . T . . END=1012475 GT:DP:GQ:MIN_DP:PL 0/0:82:99:82:0,120,1800 +chrX 1012476 . T . . END=1012476 GT:DP:GQ:MIN_DP:PL 0/0:77:0:77:0,0,1128 +chrX 1012477 . T . . END=1012477 GT:DP:GQ:MIN_DP:PL 0/0:87:99:87:0,120,1800 +chrX 1012478 . A . . END=1012479 GT:DP:GQ:MIN_DP:PL 0/0:77:0:77:0,0,1148 +chrX 1012480 . A . . END=1012482 GT:DP:GQ:MIN_DP:PL 0/0:86:99:86:0,120,1800 +chrX 1012483 . C . . END=1012483 GT:DP:GQ:MIN_DP:PL 0/0:74:0:74:0,0,873 +chrX 1012484 . T . . END=1012506 GT:DP:GQ:MIN_DP:PL 0/0:86:99:86:0,120,1800 +chrX 1012507 . T . . END=1012507 GT:DP:GQ:MIN_DP:PL 0/0:80:0:80:0,0,0 +chrX 1012508 . T . . END=1012508 GT:DP:GQ:MIN_DP:PL 0/0:86:99:86:0,120,1800 +chrX 1012509 . A . . END=1012510 GT:DP:GQ:MIN_DP:PL 0/0:82:0:82:0,0,0 +chrX 1012511 . A . . END=1012536 GT:DP:GQ:MIN_DP:PL 0/0:88:99:88:0,99,1485 +chrX 1012537 . T . . END=1012537 GT:DP:GQ:MIN_DP:PL 0/0:77:0:77:0,0,0 +chrX 1012538 . T . . END=1012539 GT:DP:GQ:MIN_DP:PL 0/0:84:99:84:0,120,1800 +chrX 1012540 . A . . END=1012540 GT:DP:GQ:MIN_DP:PL 0/0:78:0:78:0,0,0 +chrX 1012541 . A . . END=1012542 GT:DP:GQ:MIN_DP:PL 0/0:86:99:86:0,120,1800 +chrX 1012543 . A . . END=1012543 GT:DP:GQ:MIN_DP:PL 0/0:74:0:74:0,0,1011 +chrX 1012544 . T . . END=1012563 GT:DP:GQ:MIN_DP:PL 0/0:86:99:86:0,108,1620 +chrX 1012564 . A . . END=1012565 GT:DP:GQ:MIN_DP:PL 0/0:81:0:81:0,0,2100 +chrX 1012566 . T . . END=1012572 GT:DP:GQ:MIN_DP:PL 0/0:77:26:75:0,26,1800 +chrX 1012573 . G . . END=1012573 GT:DP:GQ:MIN_DP:PL 0/0:73:0:73:0,0,0 +chrX 1012574 . T . . END=1012628 GT:DP:GQ:MIN_DP:PL 0/0:73:96:73:0,96,1800 +chrX 1012629 . A G, 981.64 . AS_QUALapprox=|989|0;AS_VarDP=30|37|0;BaseQRankSum=-1.135;DP=70;MQRankSum=1.141;QUALapprox=989;RAW_GT_COUNT=0,1,0;RAW_MQandDP=251764,70;ReadPosRankSum=0.814;VarDP=67 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:30,37,0:67:99:0|1:1012629_A_G:989,0,1053,1079,1164,2243:1012629:24,6,19,18 +chrX 1012630 . T . . END=1012646 GT:DP:GQ:MIN_DP:PL 0/0:73:99:73:0,120,1800 +chrX 1012647 . AT A, 745.60 . AS_QUALapprox=|753|0;AS_VarDP=43|27|0;BaseQRankSum=1.073;DP=73;MQRankSum=0.000;QUALapprox=753;RAW_GT_COUNT=0,1,0;RAW_MQandDP=262564,73;ReadPosRankSum=1.199;VarDP=70 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:43,27,0:70:99:1|0:1012629_A_G:753,0,1619,883,1700,2583:1012629:23,20,22,5 +chrX 1012649 . T . . END=1012841 GT:DP:GQ:MIN_DP:PL 0/0:86:99:86:0,120,1800 +chrX 1012842 . G A, 892.64 . AS_QUALapprox=|900|0;AS_VarDP=42|25|0;BaseQRankSum=0.105;DP=68;MQRankSum=0.000;QUALapprox=900;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=0.317;VarDP=67 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:42,25,0:67:99:0|1:1012842_G_A:900,0,1654,1027,1729,2756:1012842:15,27,8,17 +chrX 1012843 . A . . END=1012847 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 1012848 . T C, 894.64 . AS_QUALapprox=|902|0;AS_VarDP=42|25|0;BaseQRankSum=-1.613;DP=70;MQRankSum=0.000;QUALapprox=902;RAW_GT_COUNT=0,1,0;RAW_MQandDP=252000,70;ReadPosRankSum=0.817;VarDP=67 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:42,25,0:67:99:0|1:1012842_G_A:902,0,1654,1028,1729,2757:1012842:15,27,8,17 +chrX 1012849 . A . . END=1012876 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 1012877 . C A, 898.64 . AS_QUALapprox=|906|0;AS_VarDP=37|25|0;BaseQRankSum=-1.019;DP=62;MQRankSum=0.000;QUALapprox=906;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=-0.431;VarDP=62 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:37,25,0:62:99:0|1:1012877_C_A:906,0,1417,1018,1492,2510:1012877:14,23,10,15 +chrX 1012878 . A . . END=1012888 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1012889 . A T, 996.64 . AS_QUALapprox=|1004|0;AS_VarDP=33|28|0;BaseQRankSum=-0.722;DP=62;MQRankSum=0.000;QUALapprox=1004;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=-1.260;VarDP=61 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:33,28,0:61:99:0|1:1012877_C_A:1004,0,1281,1103,1365,2468:1012877:13,20,11,17 +chrX 1012890 . G . . END=1012977 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1012978 . C CT, 1281.60 . AS_QUALapprox=|1289|0;AS_VarDP=20|33|0;BaseQRankSum=1.307;DP=54;MQRankSum=0.000;QUALapprox=1289;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=0.299;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:20,33,0:53:99:0|1:1012978_C_CT:1289,0,740,1349,840,2189:1012978:12,8,23,10 +chrX 1012979 . C . . END=1012979 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 1012980 . T C, 1281.64 . AS_QUALapprox=|1289|0;AS_VarDP=20|33|0;BaseQRankSum=0.138;DP=55;MQRankSum=0.000;QUALapprox=1289;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=0.028;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:20,33,0:53:99:0|1:1012978_C_CT:1289,0,740,1349,840,2189:1012978:12,8,23,10 +chrX 1012981 . C . . END=1013042 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 1013043 . G T, 852.64 . AS_QUALapprox=|860|0;AS_VarDP=24|31|0;BaseQRankSum=0.520;DP=57;MQRankSum=0.000;QUALapprox=860;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=0.059;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:24,31,0:55:99:860,0,604,932,697,1629:15,9,17,14 +chrX 1013044 . T . . END=1013129 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 1013130 . C T, 1019.64 . AS_QUALapprox=|1027|0;AS_VarDP=34|38|0;BaseQRankSum=2.439;DP=72;MQRankSum=0.000;QUALapprox=1027;RAW_GT_COUNT=0,1,0;RAW_MQandDP=259200,72;ReadPosRankSum=-0.288;VarDP=72 GT:AD:DP:GQ:PL:SB 0/1:34,38,0:72:99:1027,0,712,1126,826,1952:14,20,14,24 +chrX 1013131 . G . . END=1013510 GT:DP:GQ:MIN_DP:PL 0/0:67:72:67:0,72,1427 +chrX 1013511 . T C, 421.64 . AS_QUALapprox=|429|0;AS_VarDP=27|17|0;BaseQRankSum=0.430;DP=45;MQRankSum=0.000;QUALapprox=429;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=-0.784;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:27,17,0:44:99:429,0,731,510,782,1292:12,15,8,9 +chrX 1013512 . G . . END=1013625 GT:DP:GQ:MIN_DP:PL 0/0:54:56:54:0,56,1441 +chrX 1013626 . C A, 732.64 . AS_QUALapprox=|740|0;AS_VarDP=30|27|0;BaseQRankSum=2.523;DP=61;MQRankSum=-0.537;QUALapprox=740;RAW_GT_COUNT=0,1,0;RAW_MQandDP=209050,61;ReadPosRankSum=1.447;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:30,27,0:57:99:740,0,737,829,818,1647:13,17,19,8 +chrX 1013627 . A . . END=1013731 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 1013732 . G A, 720.64 . AS_QUALapprox=|728|0;AS_VarDP=23|30|0;BaseQRankSum=-2.639;DP=54;MQRankSum=-1.223;QUALapprox=728;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190096,54;ReadPosRankSum=0.422;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:23,30,0:53:99:728,0,642,797,730,1527:11,12,20,10 +chrX 1013733 . A . . END=1013811 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 1013812 . G . . END=1013812 GT:DP:GQ:MIN_DP:PL 0/0:75:0:75:0,0,1811 +chrX 1013813 . G . . END=1013918 GT:DP:GQ:MIN_DP:PL 0/0:76:99:76:0,120,1800 +chrX 1013919 . C CA, 452.60 . AS_QUALapprox=|460|0;AS_VarDP=37|22|0;BaseQRankSum=2.565;DP=74;MQRankSum=0.000;QUALapprox=460;RAW_GT_COUNT=0,1,0;RAW_MQandDP=266400,74;ReadPosRankSum=-0.612;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:37,22,0:59:99:460,0,926,571,993,1563:16,21,7,15 +chrX 1013920 . A . . END=1014036 GT:DP:GQ:MIN_DP:PL 0/0:62:74:62:0,74,1499 +chrX 1014037 . T TA, 422.60 . AS_QUALapprox=|430|0;AS_VarDP=18|24|0;BaseQRankSum=0.327;DP=56;MQRankSum=-0.818;QUALapprox=430;RAW_GT_COUNT=0,1,0;RAW_MQandDP=199600,56;ReadPosRankSum=-0.928;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:18,24,0:42:99:430,0,316,483,387,870:9,9,16,8 +chrX 1014038 . A . . END=1014206 GT:DP:GQ:MIN_DP:PL 0/0:48:86:48:0,86,1075 +chrX 1014207 . C T, 583.64 . AS_QUALapprox=|591|0;AS_VarDP=21|23|0;BaseQRankSum=-0.483;DP=45;MQRankSum=0.000;QUALapprox=591;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=-0.717;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:21,23,0:44:99:591,0,543,654,612,1266:8,13,8,15 +chrX 1014208 . G . . END=1014400 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,110,1444 +chrX 1014401 . A C, 540.64 . AS_QUALapprox=|548|0;AS_VarDP=28|21|0;BaseQRankSum=1.305;DP=50;MQRankSum=0.000;QUALapprox=548;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=1.182;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:28,21,0:49:99:548,0,740,632,803,1435:16,12,14,7 +chrX 1014402 . A . . END=1014503 GT:DP:GQ:MIN_DP:PL 0/0:48:97:48:0,97,1286 +chrX 1014504 . C G, 374.64 . AS_QUALapprox=|382|0;AS_VarDP=32|17|0;BaseQRankSum=-0.655;DP=49;MQRankSum=0.772;QUALapprox=382;RAW_GT_COUNT=0,1,0;RAW_MQandDP=173584,49;ReadPosRankSum=1.019;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:32,17,0:49:99:382,0,867,478,919,1396:16,16,11,6 +chrX 1014505 . C . . END=1014688 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1014689 . T C, 801.64 . AS_QUALapprox=|809|0;AS_VarDP=25|31|0;BaseQRankSum=-2.610;DP=58;MQRankSum=-1.256;QUALapprox=809;RAW_GT_COUNT=0,1,0;RAW_MQandDP=206009,58;ReadPosRankSum=-0.239;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:25,31,0:56:99:809,0,690,884,783,1667:9,16,17,14 +chrX 1014690 . G . . END=1014739 GT:DP:GQ:MIN_DP:PL 0/0:49:90:49:0,90,1159 +chrX 1014740 . CAA C, 453.60 . AS_QUALapprox=|461|0;AS_VarDP=20|16|0;BaseQRankSum=-0.070;DP=50;MQRankSum=1.323;QUALapprox=461;RAW_GT_COUNT=0,1,0;RAW_MQandDP=174585,50;ReadPosRankSum=-1.018;VarDP=36 GT:AD:DP:GQ:PL:SB 0/1:20,16,0:36:99:461,0,569,521,618,1139:7,13,7,9 +chrX 1014743 . A . . END=1014799 GT:DP:GQ:MIN_DP:PL 0/0:42:87:42:0,87,1112 +chrX 1014800 . C A, 808.64 . AS_QUALapprox=|816|0;AS_VarDP=15|29|0;BaseQRankSum=-0.035;DP=44;MQRankSum=0.000;QUALapprox=816;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=2.589;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:15,29,0:44:99:816,0,358,861,446,1306:9,6,14,15 +chrX 1014801 . G . . END=1014852 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 1014853 . C T, 847.64 . AS_QUALapprox=|855|0;AS_VarDP=22|32|0;BaseQRankSum=0.475;DP=59;MQRankSum=0.000;QUALapprox=855;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-0.352;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:22,32,0:54:99:855,0,533,921,628,1550:15,7,18,14 +chrX 1014854 . C . . END=1015096 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,108,1160 +chrX 1015097 . G A, 706.64 . AS_QUALapprox=|714|0;AS_VarDP=21|27|0;BaseQRankSum=-0.432;DP=50;MQRankSum=1.176;QUALapprox=714;RAW_GT_COUNT=0,1,0;RAW_MQandDP=178801,50;ReadPosRankSum=-0.229;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:21,27,0:48:99:714,0,536,777,617,1394:14,7,15,12 +chrX 1015098 . G . . END=1015168 GT:DP:GQ:MIN_DP:PL 0/0:50:89:50:0,89,1380 +chrX 1015169 . T C, 615.64 . AS_QUALapprox=|623|0;AS_VarDP=28|24|0;BaseQRankSum=0.468;DP=53;MQRankSum=0.000;QUALapprox=623;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=-1.194;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:28,24,0:52:99:623,0,728,707,800,1506:19,9,12,12 +chrX 1015170 . A . . END=1015201 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 1015202 . A G, 404.64 . AS_QUALapprox=|412|0;AS_VarDP=30|18|0;BaseQRankSum=1.204;DP=50;MQRankSum=0.000;QUALapprox=412;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=-1.544;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:30,18,0:48:99:412,0,754,502,808,1309:17,13,9,9 +chrX 1015203 . C . . END=1015235 GT:DP:GQ:MIN_DP:PL 0/0:43:96:43:0,96,1212 +chrX 1015236 . T C, 291.64 . AS_QUALapprox=|299|0;AS_VarDP=26|13|0;BaseQRankSum=0.446;DP=39;MQRankSum=0.000;QUALapprox=299;RAW_GT_COUNT=0,1,0;RAW_MQandDP=140400,39;ReadPosRankSum=-0.268;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:26,13,0:39:99:299,0,727,378,766,1143:15,11,5,8 +chrX 1015237 . G . . END=1015319 GT:DP:GQ:MIN_DP:PL 0/0:38:81:38:0,81,1061 +chrX 1015320 . G A, 491.64 . AS_QUALapprox=|499|0;AS_VarDP=24|18|0;BaseQRankSum=2.285;DP=44;MQRankSum=0.000;QUALapprox=499;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=1.513;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:24,18,0:42:99:499,0,648,572,702,1274:9,15,8,10 +chrX 1015321 . G . . END=1015435 GT:DP:GQ:MIN_DP:PL 0/0:44:91:44:0,91,1310 +chrX 1015436 . C A,T, 478.64 . AS_QUALapprox=|0|486|0;AS_VarDP=25|1|18|0;BaseQRankSum=-0.309;DP=47;MQRankSum=0.000;QUALapprox=486;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=0.498;VarDP=44 GT:AD:DP:GQ:PL:SB 0/2:25,1,18,0:44:99:486,602,1861,0,828,720,604,1688,827,1620:15,10,8,11 +chrX 1015437 . T . . END=1015481 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 1015482 . C G, 486.64 . AS_QUALapprox=|494|0;AS_VarDP=31|21|0;BaseQRankSum=-1.825;DP=52;MQRankSum=0.000;QUALapprox=494;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=0.606;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:31,21,0:52:99:494,0,902,587,964,1551:19,12,10,11 +chrX 1015483 . T . . END=1015849 GT:DP:GQ:MIN_DP:PL 0/0:58:91:58:0,91,1448 +chrX 1015850 . G A, 2243.06 . AS_QUALapprox=|2257|0;AS_VarDP=0|68|0;DP=72;QUALapprox=2257;RAW_GT_COUNT=0,0,1;RAW_MQandDP=258625,72;VarDP=68 GT:AD:DP:GQ:PL:SB 1/1:0,68,0:68:99:2257,204,0,2257,204,2257:0,0,32,36 +chrX 1015851 . T . . END=1016186 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,105,1800 +chrX 1016187 . C T, 987.64 . AS_QUALapprox=|995|0;AS_VarDP=20|26|0;BaseQRankSum=-2.155;DP=47;MQRankSum=0.188;QUALapprox=995;RAW_GT_COUNT=0,1,0;RAW_MQandDP=166437,47;ReadPosRankSum=1.641;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:20,26,0:46:99:0|1:1016187_C_T:995,0,751,1055,829,1884:1016187:12,8,13,13 +chrX 1016188 . A G, 987.64 . AS_QUALapprox=|995|0;AS_VarDP=20|26|0;BaseQRankSum=-1.420;DP=47;MQRankSum=0.188;QUALapprox=995;RAW_GT_COUNT=0,1,0;RAW_MQandDP=166437,47;ReadPosRankSum=1.517;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:20,26,0:46:99:0|1:1016187_C_T:995,0,751,1055,829,1884:1016187:12,8,13,13 +chrX 1016189 . C . . END=1016557 GT:DP:GQ:MIN_DP:PL 0/0:58:54:58:0,54,1384 +chrX 1016558 . C G, 643.64 . AS_QUALapprox=|651|0;AS_VarDP=31|25|0;BaseQRankSum=1.082;DP=58;MQRankSum=0.934;QUALapprox=651;RAW_GT_COUNT=0,1,0;RAW_MQandDP=207225,58;ReadPosRankSum=0.272;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:31,25,0:56:99:651,0,794,744,869,1613:20,11,11,14 +chrX 1016559 . G . . END=1016705 GT:DP:GQ:MIN_DP:PL 0/0:58:92:58:0,92,1557 +chrX 1016706 . AT A, 407.60 . AS_QUALapprox=|415|0;AS_VarDP=19|19|0;BaseQRankSum=-0.307;DP=52;MQRankSum=-0.947;QUALapprox=415;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183449,52;ReadPosRankSum=0.927;VarDP=38 GT:AD:DP:GQ:PL:SB 0/1:19,19,0:38:99:415,0,394,472,451,923:8,11,12,7 +chrX 1016708 . T . . END=1016933 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,114,1567 +chrX 1016934 . G T, 593.64 . AS_QUALapprox=|601|0;AS_VarDP=26|22|0;BaseQRankSum=1.358;DP=49;MQRankSum=0.000;QUALapprox=601;RAW_GT_COUNT=0,1,0;RAW_MQandDP=173956,49;ReadPosRankSum=1.170;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:26,22,0:48:99:601,0,667,679,733,1412:14,12,8,14 +chrX 1016935 . G . . END=1017023 GT:DP:GQ:MIN_DP:PL 0/0:54:81:54:0,81,1512 +chrX 1017024 . A AT, 731.60 . AS_QUALapprox=|739|0;AS_VarDP=27|30|0;BaseQRankSum=-0.768;DP=59;MQRankSum=0.000;QUALapprox=739;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-0.528;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:27,30,0:57:99:739,0,652,820,742,1562:17,10,17,13 +chrX 1017025 . T . . END=1017766 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 1017767 . A G, 639.64 . AS_QUALapprox=|647|0;AS_VarDP=38|26|0;BaseQRankSum=-0.141;DP=65;MQRankSum=0.859;QUALapprox=647;RAW_GT_COUNT=0,1,0;RAW_MQandDP=233536,65;ReadPosRankSum=1.389;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:38,26,0:64:99:647,0,1058,761,1136,1897:18,20,16,10 +chrX 1017768 . G . . END=1017812 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 1017813 . G A, 626.64 . AS_QUALapprox=|634|0;AS_VarDP=31|24|0;BaseQRankSum=0.822;DP=61;MQRankSum=0.000;QUALapprox=634;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216400,61;ReadPosRankSum=-0.280;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:31,24,0:55:99:634,0,848,727,919,1646:16,15,14,10 +chrX 1017814 . C . . END=1017848 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 1017849 . A G, 650.64 . AS_QUALapprox=|658|0;AS_VarDP=32|26|0;BaseQRankSum=-1.654;DP=63;MQRankSum=-1.075;QUALapprox=658;RAW_GT_COUNT=0,1,0;RAW_MQandDP=222601,63;ReadPosRankSum=-0.493;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:32,26,0:58:99:658,0,927,755,1004,1759:15,17,9,17 +chrX 1017850 . A . . END=1017902 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 1017903 . AAAC A, 908.60 . AS_QUALapprox=|916|0;AS_VarDP=29|25|0;BaseQRankSum=-1.013;DP=60;MQRankSum=-1.040;QUALapprox=916;RAW_GT_COUNT=0,1,0;RAW_MQandDP=215001,60;ReadPosRankSum=-1.302;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:29,25,0:54:99:916,0,1119,1003,1194,2197:16,13,10,15 +chrX 1017907 . A . . END=1018391 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,104,1638 +chrX 1018392 . C A, 706.64 . AS_QUALapprox=|714|0;AS_VarDP=31|27|0;BaseQRankSum=1.192;DP=60;MQRankSum=-0.099;QUALapprox=714;RAW_GT_COUNT=0,1,0;RAW_MQandDP=210626,60;ReadPosRankSum=0.062;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:31,27,0:58:99:714,0,803,807,884,1691:14,17,11,16 +chrX 1018393 . G . . END=1018752 GT:DP:GQ:MIN_DP:PL 0/0:64:89:64:0,89,1606 +chrX 1018753 . G C, 716.64 . AS_QUALapprox=|724|0;AS_VarDP=27|29|0;BaseQRankSum=-1.275;DP=59;MQRankSum=1.072;QUALapprox=724;RAW_GT_COUNT=0,1,0;RAW_MQandDP=211401,59;ReadPosRankSum=-0.820;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:27,29,0:56:99:724,0,705,805,792,1597:14,13,15,14 +chrX 1018754 . G . . END=1019303 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,109,1589 +chrX 1019304 . C T, 633.64 . AS_QUALapprox=|641|0;AS_VarDP=30|25|0;BaseQRankSum=-1.785;DP=55;MQRankSum=0.000;QUALapprox=641;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-1.209;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:30,25,0:55:99:641,0,858,731,933,1664:16,14,12,13 +chrX 1019305 . A . . END=1019430 GT:DP:GQ:MIN_DP:PL 0/0:50:90:50:0,90,1397 +chrX 1019431 . A G, 470.64 . AS_QUALapprox=|478|0;AS_VarDP=19|20|0;BaseQRankSum=-0.100;DP=40;MQRankSum=0.000;QUALapprox=478;RAW_GT_COUNT=0,1,0;RAW_MQandDP=144000,40;ReadPosRankSum=-0.970;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:19,20,0:39:99:478,0,474,535,533,1069:6,13,12,8 +chrX 1019432 . C . . END=1019475 GT:DP:GQ:MIN_DP:PL 0/0:37:90:37:0,90,1081 +chrX 1019476 . C CA, 804.60 . AS_QUALapprox=|812|0;AS_VarDP=14|21|0;BaseQRankSum=-2.594;DP=38;MQRankSum=0.000;QUALapprox=812;RAW_GT_COUNT=0,1,0;RAW_MQandDP=136800,38;ReadPosRankSum=0.253;VarDP=35 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:14,21,0:35:99:0|1:1019476_C_CA:812,0,513,854,576,1430:1019476:4,10,10,11 +chrX 1019477 . A . . END=1019481 GT:DP:GQ:MIN_DP:PL 0/0:38:87:38:0,87,1305 +chrX 1019482 . T A, 804.64 . AS_QUALapprox=|812|0;AS_VarDP=14|21|0;BaseQRankSum=-1.526;DP=39;MQRankSum=0.000;QUALapprox=812;RAW_GT_COUNT=0,1,0;RAW_MQandDP=140400,39;ReadPosRankSum=0.792;VarDP=35 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:14,21,0:35:99:0|1:1019476_C_CA:812,0,513,854,576,1430:1019476:4,10,10,11 +chrX 1019483 . A . . END=1019716 GT:DP:GQ:MIN_DP:PL 0/0:51:64:51:0,64,1227 +chrX 1019717 . T C, 603.64 . AS_QUALapprox=|611|0;AS_VarDP=19|22|0;BaseQRankSum=0.642;DP=42;MQRankSum=0.000;QUALapprox=611;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151200,42;ReadPosRankSum=-1.099;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:19,22,0:41:99:611,0,497,669,563,1232:11,8,13,9 +chrX 1019718 . A . . END=1020258 GT:DP:GQ:MIN_DP:PL 0/0:61:78:61:0,78,1345 +chrX 1020259 . G A, 1031.64 . AS_QUALapprox=|1039|0;AS_VarDP=34|38|0;BaseQRankSum=-0.876;DP=76;MQRankSum=0.000;QUALapprox=1039;RAW_GT_COUNT=0,1,0;RAW_MQandDP=273600,76;ReadPosRankSum=-0.299;VarDP=72 GT:AD:DP:GQ:PL:SB 0/1:34,38,0:72:99:1039,0,934,1142,1048,2190:16,18,21,17 +chrX 1020260 . G . . END=1020921 GT:DP:GQ:MIN_DP:PL 0/0:46:34:46:0,34,1150 +chrX 1020922 . CGTCTGACCCTCATTCCTTTTCCTGACTGTACAGTATTCCATTGTGTGTCTCTTCTCCCACTGGGCCTGATGTCTTCAAGGTTCATCCACTCTGCAGCCTGT C, 77.60 . AS_QUALapprox=|85|0;AS_VarDP=70|16|0;BaseQRankSum=-0.279;DP=87;MQRankSum=-2.131;QUALapprox=85;RAW_GT_COUNT=0,1,0;RAW_MQandDP=294356,87;ReadPosRankSum=-0.040;VarDP=86 GT:AD:DP:GQ:PL:SB 0/1:70,16,0:86:85:85,0,2724,296,2758,3053:31,39,10,6 +chrX 1021024 . G . . END=1021217 GT:DP:GQ:MIN_DP:PL 0/0:56:48:56:0,48,1290 +chrX 1021218 . A . . END=1021218 GT:DP:GQ:MIN_DP:PL 0/0:44:9:44:0,9,1112 +chrX 1021219 . C . . END=1021229 GT:DP:GQ:MIN_DP:PL 0/0:47:89:47:0,89,1390 +chrX 1021230 . G A, 558.64 . AS_QUALapprox=|566|0;AS_VarDP=16|23|0;BaseQRankSum=-0.693;DP=39;MQRankSum=0.408;QUALapprox=566;RAW_GT_COUNT=0,1,0;RAW_MQandDP=111356,39;ReadPosRankSum=1.157;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:16,23,0:39:99:566,0,396,614,465,1079:9,7,14,9 +chrX 1021231 . T . . END=1022136 GT:DP:GQ:MIN_DP:PL 0/0:45:22:42:0,22,1112 +chrX 1022137 . C T, 1475.06 . AS_QUALapprox=|1489|0;AS_VarDP=0|46|0;DP=50;QUALapprox=1489;RAW_GT_COUNT=0,0,1;RAW_MQandDP=179425,50;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1489,138,0,1489,138,1489:0,0,29,17 +chrX 1022138 . C . . END=1022191 GT:DP:GQ:MIN_DP:PL 0/0:40:96:40:0,96,1187 +chrX 1022192 . C T, 1196.06 . AS_QUALapprox=|1210|0;AS_VarDP=0|38|0;DP=39;QUALapprox=1210;RAW_GT_COUNT=0,0,1;RAW_MQandDP=139825,39;VarDP=38 GT:AD:DP:GQ:PL:SB 1/1:0,38,0:38:99:1210,113,0,1210,113,1210:0,0,21,17 +chrX 1022193 . G . . END=1022369 GT:DP:GQ:MIN_DP:PL 0/0:53:70:53:0,70,1171 +chrX 1022370 . A AT, 478.60 . AS_QUALapprox=|486|0;AS_VarDP=19|22|0;BaseQRankSum=-1.908;DP=48;MQRankSum=1.125;QUALapprox=486;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172009,48;ReadPosRankSum=-0.772;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:19,22,0:41:99:486,0,421,544,487,1031:9,10,11,11 +chrX 1022371 . T . . END=1022407 GT:DP:GQ:MIN_DP:PL 0/0:45:96:45:0,96,1225 +chrX 1022408 . G A, 496.64 . AS_QUALapprox=|504|0;AS_VarDP=23|19|0;BaseQRankSum=1.393;DP=45;MQRankSum=0.957;QUALapprox=504;RAW_GT_COUNT=0,1,0;RAW_MQandDP=161209,45;ReadPosRankSum=0.961;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:23,19,0:42:99:504,0,593,573,650,1224:12,11,5,14 +chrX 1022409 . C . . END=1022416 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,120,1800 +chrX 1022417 . GGA G, 870.60 . AS_QUALapprox=|878|0;AS_VarDP=25|23|0;BaseQRankSum=1.020;DP=50;MQRankSum=1.001;QUALapprox=878;RAW_GT_COUNT=0,1,0;RAW_MQandDP=179209,50;ReadPosRankSum=0.124;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:25,23,0:48:99:878,0,963,953,1032,1986:12,13,8,15 +chrX 1022420 . G . . END=1022435 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 1022436 . T C, 687.64 . AS_QUALapprox=|695|0;AS_VarDP=25|26|0;BaseQRankSum=0.370;DP=55;MQRankSum=-0.941;QUALapprox=695;RAW_GT_COUNT=0,1,0;RAW_MQandDP=197209,55;ReadPosRankSum=-0.104;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:25,26,0:51:99:695,0,666,770,744,1514:10,15,12,14 +chrX 1022437 . C . . END=1022474 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 1022475 . A G, 1768.06 . AS_QUALapprox=|1782|0;AS_VarDP=0|53|0;DP=55;QUALapprox=1782;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1782,159,0,1782,159,1782:0,0,24,29 +chrX 1022476 . T . . END=1022575 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 1022576 . A G, 1652.06 . AS_QUALapprox=|1666|0;AS_VarDP=0|51|0;DP=51;QUALapprox=1666;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183249,51;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1666,153,0,1666,153,1666:0,0,31,20 +chrX 1022577 . G . . END=1022598 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 1022599 . T G, 1568.06 . AS_QUALapprox=|1582|0;AS_VarDP=0|50|0;DP=51;QUALapprox=1582;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183249,51;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1582,149,0,1582,149,1582:0,0,28,22 +chrX 1022600 . A . . END=1022619 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 1022620 . T C, 1618.06 . AS_QUALapprox=|1632|0;AS_VarDP=0|53|0;DP=55;QUALapprox=1632;RAW_GT_COUNT=0,0,1;RAW_MQandDP=197649,55;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1632,158,0,1632,158,1632:0,0,29,24 +chrX 1022621 . G . . END=1023082 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 1023083 . C T, 2052.06 . AS_QUALapprox=|2066|0;AS_VarDP=1|62|0;BaseQRankSum=2.854;DP=66;MQRankSum=0.000;QUALapprox=2066;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;ReadPosRankSum=-0.193;VarDP=63 GT:AD:DP:GQ:PL:SB 1/1:1,62,0:63:99:2066,179,0,2068,186,2075:1,0,18,44 +chrX 1023084 . G . . END=1023425 GT:DP:GQ:MIN_DP:PL 0/0:76:96:76:0,96,1702 +chrX 1023426 . TTTTATTTATTTA T, 1325.03 . AS_QUALapprox=|1339|0;AS_VarDP=0|30|0;DP=52;QUALapprox=1339;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=30 GT:AD:DP:GQ:PL:SB 1/1:0,30,0:30:93:1339,93,0,1339,93,1339:0,0,17,13 +chrX 1023439 . T . . END=1023460 GT:DP:GQ:MIN_DP:PL 0/0:50:90:50:0,90,1350 +chrX 1023461 . T . . END=1023465 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,923 +chrX 1023466 . A . . END=1023466 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,114,1710 +chrX 1023467 . T . . END=1023467 GT:DP:GQ:MIN_DP:PL 0/0:41:19:41:0,19,1177 +chrX 1023468 . T . . END=1023583 GT:DP:GQ:MIN_DP:PL 0/0:55:51:55:0,51,1232 +chrX 1023584 . G A, 1707.06 . AS_QUALapprox=|1721|0;AS_VarDP=0|52|0;DP=53;QUALapprox=1721;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1721,156,0,1721,156,1721:0,0,23,29 +chrX 1023585 . G . . END=1023717 GT:DP:GQ:MIN_DP:PL 0/0:50:78:50:0,78,1524 +chrX 1023718 . A G, 1912.06 . AS_QUALapprox=|1926|0;AS_VarDP=1|58|0;BaseQRankSum=2.778;DP=61;MQRankSum=0.000;QUALapprox=1926;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;ReadPosRankSum=0.558;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:1,58,0:59:99:1926,167,0,1928,174,1935:0,1,35,23 +chrX 1023719 . A . . END=1024093 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,113,1800 +chrX 1024094 . A T, 763.64 . AS_QUALapprox=|771|0;AS_VarDP=29|30|0;BaseQRankSum=-1.615;DP=61;MQRankSum=0.000;QUALapprox=771;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-0.895;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:29,30,0:59:99:771,0,801,858,891,1749:14,15,13,17 +chrX 1024095 . C . . END=1024112 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 1024113 . T C, 824.64 . AS_QUALapprox=|832|0;AS_VarDP=26|31|0;BaseQRankSum=-0.983;DP=61;MQRankSum=0.000;QUALapprox=832;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-2.004;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:26,31,0:57:99:832,0,688,909,781,1690:14,12,13,18 +chrX 1024114 . C . . END=1024395 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,105,1395 +chrX 1024396 . A C, 725.64 . AS_QUALapprox=|733|0;AS_VarDP=16|26|0;BaseQRankSum=-1.363;DP=44;MQRankSum=0.000;QUALapprox=733;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=-0.778;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:16,26,0:42:99:733,0,430,781,508,1289:8,8,19,7 +chrX 1024397 . T . . END=1024626 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,113,1479 +chrX 1024627 . T A, 1194.64 . AS_QUALapprox=|1202|0;AS_VarDP=33|31|0;BaseQRankSum=-1.987;DP=66;MQRankSum=-3.879;QUALapprox=1202;RAW_GT_COUNT=0,1,0;RAW_MQandDP=202270,66;ReadPosRankSum=0.729;VarDP=64 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:33,31,0:64:99:0|1:1024627_T_A:1202,0,1272,1302,1365,2667:1024627:17,16,15,16 +chrX 1024628 . T . . END=1024630 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1024631 . C G, 856.64 . AS_QUALapprox=|864|0;AS_VarDP=32|33|0;BaseQRankSum=0.834;DP=67;MQRankSum=2.973;QUALapprox=864;RAW_GT_COUNT=0,1,0;RAW_MQandDP=199870,67;ReadPosRankSum=-0.551;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:32,33,0:65:99:864,0,1225,960,1323,2284:15,17,17,16 +chrX 1024632 . G T, 1188.64 . AS_QUALapprox=|1196|0;AS_VarDP=35|31|0;BaseQRankSum=-0.338;DP=67;MQRankSum=-2.955;QUALapprox=1196;RAW_GT_COUNT=0,1,0;RAW_MQandDP=197870,67;ReadPosRankSum=0.538;VarDP=66 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:35,31,0:66:99:0|1:1024627_T_A:1196,0,1366,1302,1459,2761:1024627:17,18,15,16 +chrX 1024633 . G . . END=1024640 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 1024641 . A G, 1065.64 . AS_QUALapprox=|1073|0;AS_VarDP=34|28|0;BaseQRankSum=-0.583;DP=62;MQRankSum=-3.235;QUALapprox=1073;RAW_GT_COUNT=0,1,0;RAW_MQandDP=179870,62;ReadPosRankSum=0.074;VarDP=62 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:34,28,0:62:99:0|1:1024627_T_A:1073,0,1313,1176,1397,2573:1024627:17,17,13,15 +chrX 1024642 . A . . END=1024695 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1024696 . G A, 734.64 . AS_QUALapprox=|742|0;AS_VarDP=22|27|0;BaseQRankSum=0.804;DP=50;MQRankSum=3.092;QUALapprox=742;RAW_GT_COUNT=0,1,0;RAW_MQandDP=122617,50;ReadPosRankSum=0.885;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:22,27,0:49:99:742,0,543,807,624,1431:9,13,13,14 +chrX 1024697 . A . . END=1024761 GT:DP:GQ:MIN_DP:PL 0/0:39:87:39:0,87,1211 +chrX 1024762 . G C, 374.64 . AS_QUALapprox=|382|0;AS_VarDP=25|15|0;BaseQRankSum=-0.049;DP=43;MQRankSum=1.002;QUALapprox=382;RAW_GT_COUNT=0,1,0;RAW_MQandDP=70568,43;ReadPosRankSum=-0.713;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:25,15,0:40:99:382,0,694,456,739,1195:12,13,6,9 +chrX 1024763 . T . . END=1024784 GT:DP:GQ:MIN_DP:PL 0/0:38:93:38:0,93,1191 +chrX 1024785 . C T, 1186.06 . AS_QUALapprox=|1200|0;AS_VarDP=0|36|0;DP=38;QUALapprox=1200;RAW_GT_COUNT=0,0,1;RAW_MQandDP=68813,38;VarDP=36 GT:AD:DP:GQ:PL:SB 1/1:0,36,0:36:99:1200,108,0,1200,108,1200:0,0,19,17 +chrX 1024786 . T . . END=1024811 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,108,1301 +chrX 1024812 . G A, 752.64 . AS_QUALapprox=|760|0;AS_VarDP=14|27|0;BaseQRankSum=0.017;DP=42;MQRankSum=-1.765;QUALapprox=760;RAW_GT_COUNT=0,1,0;RAW_MQandDP=89013,42;ReadPosRankSum=-0.495;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:14,27,0:41:99:760,0,309,801,390,1191:9,5,13,14 +chrX 1024813 . A . . END=1024955 GT:DP:GQ:MIN_DP:PL 0/0:62:77:62:0,77,1281 +chrX 1024956 . C T, 730.64 . AS_QUALapprox=|738|0;AS_VarDP=33|28|0;BaseQRankSum=-0.990;DP=63;MQRankSum=1.092;QUALapprox=738;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208801,63;ReadPosRankSum=-1.549;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:33,28,0:61:99:738,0,934,838,1018,1855:12,21,14,14 +chrX 1024957 . T . . END=1025070 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 1025071 . G C, 727.64 . AS_QUALapprox=|735|0;AS_VarDP=21|27|0;BaseQRankSum=1.019;DP=50;MQRankSum=1.666;QUALapprox=735;RAW_GT_COUNT=0,1,0;RAW_MQandDP=168672,50;ReadPosRankSum=-0.728;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:21,27,0:48:99:735,0,506,797,587,1385:7,14,13,14 +chrX 1025072 . A . . END=1025126 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,108,1464 +chrX 1025127 . A C, 1570.06 . AS_QUALapprox=|1584|0;AS_VarDP=0|43|0;DP=43;QUALapprox=1584;RAW_GT_COUNT=0,0,1;RAW_MQandDP=152329,43;VarDP=43 GT:AD:DP:GQ:PL:SB 1/1:0,43,0:43:99:1584,129,0,1584,129,1584:0,0,25,18 +chrX 1025128 . C . . END=1025150 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,105,1261 +chrX 1025151 . C T, 773.64 . AS_QUALapprox=|781|0;AS_VarDP=18|21|0;BaseQRankSum=1.660;DP=39;MQRankSum=-0.883;QUALapprox=781;RAW_GT_COUNT=0,1,0;RAW_MQandDP=135891,39;ReadPosRankSum=2.536;VarDP=39 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:18,21,0:39:99:0|1:1025151_C_T:781,0,625,835,689,1523:1025151:11,7,14,7 +chrX 1025152 . A . . END=1025166 GT:DP:GQ:MIN_DP:PL 0/0:38:94:38:0,94,1157 +chrX 1025167 . A C, 807.64 . AS_QUALapprox=|815|0;AS_VarDP=17|22|0;BaseQRankSum=1.181;DP=39;MQRankSum=-0.780;QUALapprox=815;RAW_GT_COUNT=0,1,0;RAW_MQandDP=135891,39;ReadPosRankSum=1.571;VarDP=39 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:17,22,0:39:99:0|1:1025151_C_T:815,0,601,866,667,1533:1025151:11,6,15,7 +chrX 1025168 . A . . END=1025223 GT:DP:GQ:MIN_DP:PL 0/0:30:60:30:0,60,900 +chrX 1025224 . T A, 378.64 . AS_QUALapprox=|386|0;AS_VarDP=10|15|0;BaseQRankSum=0.810;DP=28;MQRankSum=-1.120;QUALapprox=386;RAW_GT_COUNT=0,1,0;RAW_MQandDP=93306,28;ReadPosRankSum=-1.221;VarDP=25 GT:AD:DP:GQ:PL:SB 0/1:10,15,0:25:99:386,0,233,416,277,693:9,1,15,0 +chrX 1025225 . G . . END=1025381 GT:DP:GQ:MIN_DP:PL 0/0:29:39:26:0,39,654 +chrX 1025382 . T A, 755.64 . AS_QUALapprox=|763|0;AS_VarDP=25|28|0;BaseQRankSum=0.113;DP=55;MQRankSum=0.000;QUALapprox=763;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=0.330;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:25,28,0:53:99:763,0,670,838,753,1592:9,16,11,17 +chrX 1025383 . A . . END=1025460 GT:DP:GQ:MIN_DP:PL 0/0:50:92:50:0,92,1340 +chrX 1025461 . G A, 623.64 . AS_QUALapprox=|631|0;AS_VarDP=26|23|0;BaseQRankSum=2.644;DP=50;MQRankSum=0.000;QUALapprox=631;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=-0.181;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:26,23,0:49:99:631,0,592,705,660,1366:11,15,13,10 +chrX 1025462 . T . . END=1025640 GT:DP:GQ:MIN_DP:PL 0/0:47:91:47:0,91,1259 +chrX 1025641 . G C, 927.64 . AS_QUALapprox=|935|0;AS_VarDP=29|35|0;BaseQRankSum=0.027;DP=65;MQRankSum=0.000;QUALapprox=935;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=0.040;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:29,35,0:64:99:935,0,716,1021,821,1843:16,13,21,14 +chrX 1025642 . T . . END=1025682 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 1025683 . G C, 1946.06 . AS_QUALapprox=|1960|0;AS_VarDP=0|62|0;DP=63;QUALapprox=1960;RAW_GT_COUNT=0,0,1;RAW_MQandDP=224800,63;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:0,62,0:62:99:1960,186,0,1960,186,1960:0,0,35,27 +chrX 1025684 . T . . END=1025916 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 1025917 . T C, 678.64 . AS_QUALapprox=|686|0;AS_VarDP=26|28|0;BaseQRankSum=-1.318;DP=58;MQRankSum=0.000;QUALapprox=686;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=0.468;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:26,28,0:54:99:686,0,682,764,766,1530:17,9,17,11 +chrX 1025918 . G . . END=1026293 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,110,1534 +chrX 1026294 . A G, 881.64 . AS_QUALapprox=|889|0;AS_VarDP=36|33|0;BaseQRankSum=-0.026;DP=72;MQRankSum=0.510;QUALapprox=889;RAW_GT_COUNT=0,1,0;RAW_MQandDP=254516,72;ReadPosRankSum=0.006;VarDP=69 GT:AD:DP:GQ:PL:SB 0/1:36,33,0:69:99:889,0,964,997,1063,2060:18,18,17,16 +chrX 1026295 . G . . END=1026349 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 1026350 . A G, 2218.06 . AS_QUALapprox=|2232|0;AS_VarDP=0|71|0;DP=73;QUALapprox=2232;RAW_GT_COUNT=0,0,1;RAW_MQandDP=260800,73;VarDP=71 GT:AD:DP:GQ:PL:SB 1/1:0,71,0:71:99:2232,213,0,2232,213,2232:0,0,38,33 +chrX 1026351 . A . . END=1026438 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1026439 . TC T, 913.60 . AS_QUALapprox=|921|0;AS_VarDP=35|32|0;BaseQRankSum=0.489;DP=69;MQRankSum=0.000;QUALapprox=921;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=-0.462;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:35,32,0:67:99:921,0,1058,1026,1154,2180:15,20,13,19 +chrX 1026441 . C . . END=1026708 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,102,1742 +chrX 1026709 . G C, 703.64 . AS_QUALapprox=|711|0;AS_VarDP=24|27|0;BaseQRankSum=0.547;DP=53;MQRankSum=0.000;QUALapprox=711;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=0.689;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:24,27,0:51:99:711,0,597,782,677,1460:12,12,15,12 +chrX 1026710 . T . . END=1026914 GT:DP:GQ:MIN_DP:PL 0/0:52:54:52:0,54,810 +chrX 1026915 . A . . END=1026915 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,572 +chrX 1026916 . C . . END=1026917 GT:DP:GQ:MIN_DP:PL 0/0:32:51:32:0,51,765 +chrX 1026918 . T TCC, 352.60 . AS_QUALapprox=|360|0;AS_VarDP=9|10|0;BaseQRankSum=0.088;DP=34;MQRankSum=0.000;QUALapprox=360;RAW_GT_COUNT=0,1,0;RAW_MQandDP=122400,34;ReadPosRankSum=-1.308;VarDP=19 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:9,10,0:19:99:0|1:1026918_T_TCC:360,0,351,390,381,772:1026918:2,7,2,8 +chrX 1026919 . C . . END=1026926 GT:DP:GQ:MIN_DP:PL 0/0:21:48:21:0,48,536 +chrX 1026927 . T TCCTCCTCCACCTCCCCC, 502.60 . AS_QUALapprox=|510|0;AS_VarDP=9|13|0;BaseQRankSum=1.346;DP=25;MQRankSum=0.000;QUALapprox=510;RAW_GT_COUNT=0,1,0;RAW_MQandDP=90000,25;ReadPosRankSum=-1.387;VarDP=22 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:9,13,0:22:99:0|1:1026918_T_TCC:510,0,339,538,378,916:1026918:2,7,1,12 +chrX 1026928 . C . . END=1027039 GT:DP:GQ:MIN_DP:PL 0/0:34:45:34:0,45,913 +chrX 1027040 . C T, 1157.06 . AS_QUALapprox=|1171|0;AS_VarDP=0|34|0;DP=38;QUALapprox=1171;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;VarDP=34 GT:AD:DP:GQ:PL:SB 1/1:0,34,0:34:99:1171,102,0,1171,102,1171:0,0,20,14 +chrX 1027041 . G . . END=1027088 GT:DP:GQ:MIN_DP:PL 0/0:36:91:36:0,91,1097 +chrX 1027089 . C T, 471.64 . AS_QUALapprox=|479|0;AS_VarDP=17|17|0;BaseQRankSum=0.042;DP=39;MQRankSum=-0.941;QUALapprox=479;RAW_GT_COUNT=0,1,0;RAW_MQandDP=139300,39;ReadPosRankSum=1.516;VarDP=34 GT:AD:DP:GQ:PL:SB 0/1:17,17,0:34:99:479,0,479,530,530,1060:15,2,10,7 +chrX 1027090 . G . . END=1027237 GT:DP:GQ:MIN_DP:PL 0/0:55:98:55:0,98,1281 +chrX 1027238 . A G, 1961.06 . AS_QUALapprox=|1975|0;AS_VarDP=0|62|0;DP=65;QUALapprox=1975;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:0,62,0:62:99:1975,185,0,1975,185,1975:0,0,38,24 +chrX 1027239 . T . . END=1027288 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1027289 . ATCAC A, 1288.60 . AS_QUALapprox=|1296|0;AS_VarDP=30|33|0;BaseQRankSum=0.995;DP=66;MQRankSum=0.000;QUALapprox=1296;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=0.494;VarDP=63 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:30,33,0:63:99:0|1:1027289_ATCAC_A:1296,0,1160,1386,1260,2646:1027289:17,13,22,11 +chrX 1027294 . G . . END=1027294 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1027295 . CGGTATTTGT C, 1272.60 . AS_QUALapprox=|1280|0;AS_VarDP=35|33|0;BaseQRankSum=0.465;DP=70;MQRankSum=0.000;QUALapprox=1280;RAW_GT_COUNT=0,1,0;RAW_MQandDP=252000,70;ReadPosRankSum=0.922;VarDP=68 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:35,33,0:68:99:0|1:1027289_ATCAC_A:1280,0,1370,1386,1470,2855:1027289:20,15,22,11 +chrX 1027305 . C . . END=1027305 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 1027306 . C T, 1279.64 . AS_QUALapprox=|1287|0;AS_VarDP=33|33|0;BaseQRankSum=1.998;DP=70;MQRankSum=0.000;QUALapprox=1287;RAW_GT_COUNT=0,1,0;RAW_MQandDP=252000,70;ReadPosRankSum=1.293;VarDP=66 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:33,33,0:66:99:0|1:1027289_ATCAC_A:1287,0,1286,1386,1386,2772:1027289:19,14,22,11 +chrX 1027307 . G . . END=1027531 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 1027532 . TTTTCTTTC T, 704.60 . AS_QUALapprox=|712|0;AS_VarDP=29|19|0;BaseQRankSum=-0.195;DP=64;MQRankSum=0.000;QUALapprox=712;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=0.948;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:29,19,0:48:99:712,0,1154,799,1212,2012:13,16,8,11 +chrX 1027541 . T . . END=1027659 GT:DP:GQ:MIN_DP:PL 0/0:63:61:63:0,61,1132 +chrX 1027660 . C CTT, 991.60 . AS_QUALapprox=|999|0;AS_VarDP=25|26|0;BaseQRankSum=-0.285;DP=56;MQRankSum=-0.941;QUALapprox=999;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198576,56;ReadPosRankSum=0.185;VarDP=51 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,26,0:51:99:0|1:1027660_C_CTT:999,0,962,1076,1040,2116:1027660:6,19,7,19 +chrX 1027661 . T . . END=1027661 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 1027662 . C CTCT, 1034.60 . AS_QUALapprox=|1042|0;AS_VarDP=25|27|0;BaseQRankSum=-1.638;DP=55;MQRankSum=-0.924;QUALapprox=1042;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194976,55;ReadPosRankSum=0.437;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,27,0:52:99:0|1:1027660_C_CTT:1042,0,958,1118,1039,2157:1027660:6,19,7,20 +chrX 1027663 . T . . END=1027671 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,120,1364 +chrX 1027672 . C T, 972.64 . AS_QUALapprox=|980|0;AS_VarDP=23|25|0;BaseQRankSum=-0.778;DP=49;MQRankSum=-0.917;QUALapprox=980;RAW_GT_COUNT=0,1,0;RAW_MQandDP=173376,49;ReadPosRankSum=-0.149;VarDP=48 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,25,0:48:99:0|1:1027660_C_CTT:980,0,891,1050,966,2016:1027660:5,18,8,17 +chrX 1027673 . T . . END=1027678 GT:DP:GQ:MIN_DP:PL 0/0:46:84:46:0,84,1277 +chrX 1027679 . T TTCTC, 931.60 . AS_QUALapprox=|939|0;AS_VarDP=23|24|0;BaseQRankSum=-0.905;DP=47;MQRankSum=-0.936;QUALapprox=939;RAW_GT_COUNT=0,1,0;RAW_MQandDP=166176,47;ReadPosRankSum=-0.682;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,24,0:47:99:0|1:1027660_C_CTT:939,0,894,1008,966,1974:1027660:6,17,8,16 +chrX 1027680 . T . . END=1027700 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,112,1394 +chrX 1027701 . T TTTCC, 1002.60 . AS_QUALapprox=|1010|0;AS_VarDP=27|26|0;BaseQRankSum=-0.043;DP=53;MQRankSum=-1.428;QUALapprox=1010;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187540,53;ReadPosRankSum=-0.472;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,26,0:53:99:0|1:1027660_C_CTT:1010,0,1055,1092,1134,2225:1027660:9,18,7,19 +chrX 1027702 . T . . END=1027720 GT:DP:GQ:MIN_DP:PL 0/0:49:60:46:0,60,1300 +chrX 1027721 . C T, 1011.64 . AS_QUALapprox=|1019|0;AS_VarDP=24|26|0;BaseQRankSum=0.860;DP=50;MQRankSum=-1.675;QUALapprox=1019;RAW_GT_COUNT=0,1,0;RAW_MQandDP=175844,50;ReadPosRankSum=-0.960;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,26,0:50:99:0|1:1027660_C_CTT:1019,0,929,1092,1008,2099:1027660:7,17,8,18 +chrX 1027722 . C . . END=1027740 GT:DP:GQ:MIN_DP:PL 0/0:47:26:46:0,26,1124 +chrX 1027741 . T TTC, 970.60 . AS_QUALapprox=|978|0;AS_VarDP=24|25|0;BaseQRankSum=-0.466;DP=49;MQRankSum=-2.001;QUALapprox=978;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169605,49;ReadPosRankSum=0.413;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,25,0:49:99:0|1:1027660_C_CTT:978,0,933,1050,1008,2058:1027660:9,15,7,18 +chrX 1027742 . T . . END=1027744 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,120,1800 +chrX 1027745 . C CTTTTCTTCTTTCTCTT, 924.60 . AS_QUALapprox=|932|0;AS_VarDP=25|24|0;BaseQRankSum=0.141;DP=51;MQRankSum=-2.085;QUALapprox=932;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176805,51;ReadPosRankSum=0.680;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,24,0:49:99:0|1:1027660_C_CTT:932,0,966,1008,1039,2046:1027660:10,15,7,17 +chrX 1027746 . T . . END=1027778 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,111,1665 +chrX 1027779 . T TTCTC, 1946.03 . AS_QUALapprox=|1960|0;AS_VarDP=0|46|0;DP=49;QUALapprox=1960;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172629,49;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1960,138,0,1960,138,1960:0,0,17,29 +chrX 1027780 . T . . END=1027799 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,105,1226 +chrX 1027800 . C CT, 636.60 . AS_QUALapprox=|644|0;AS_VarDP=22|19|0;BaseQRankSum=-0.580;DP=45;MQRankSum=0.978;QUALapprox=644;RAW_GT_COUNT=0,1,0;RAW_MQandDP=160868,45;ReadPosRankSum=1.203;VarDP=41 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,19,0:41:99:0|1:1027800_C_CT:644,0,793,710,850,1560:1027800:8,14,10,9 +chrX 1027801 . T . . END=1027827 GT:DP:GQ:MIN_DP:PL 0/0:41:61:41:0,61,1005 +chrX 1027828 . T C, 704.64 . AS_QUALapprox=|712|0;AS_VarDP=23|21|0;BaseQRankSum=-0.758;DP=46;MQRankSum=0.000;QUALapprox=712;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=0.114;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,21,0:44:99:0|1:1027800_C_CT:712,0,833,782,896,1678:1027800:11,12,12,9 +chrX 1027829 . T . . END=1027981 GT:DP:GQ:MIN_DP:PL 0/0:49:29:48:0,29,1076 +chrX 1027982 . G C, 1374.06 . AS_QUALapprox=|1388|0;AS_VarDP=0|45|0;DP=47;QUALapprox=1388;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;VarDP=45 GT:AD:DP:GQ:PL:SB 1/1:0,45,0:45:99:1388,134,0,1388,134,1388:0,0,18,27 +chrX 1027983 . T . . END=1028048 GT:DP:GQ:MIN_DP:PL 0/0:40:75:40:0,75,839 +chrX 1028049 . C CTTCCTTCCTTCT, 456.60 . AS_QUALapprox=|464|0;AS_VarDP=13|12|0;BaseQRankSum=-0.282;DP=33;MQRankSum=0.000;QUALapprox=464;RAW_GT_COUNT=0,1,0;RAW_MQandDP=118800,33;ReadPosRankSum=-2.153;VarDP=25 GT:AD:DP:GQ:PL:SB 0/1:13,12,0:25:99:464,0,472,504,508,1012:4,9,7,5 +chrX 1028050 . T . . END=1028200 GT:DP:GQ:MIN_DP:PL 0/0:41:27:37:0,27,997 +chrX 1028201 . A G, 2270.06 . AS_QUALapprox=|2284|0;AS_VarDP=0|51|0;DP=51;QUALapprox=2284;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=51 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,51,0:51:99:0|1:1028201_A_G:2284,154,0,2284,154,2284:1028201:0,0,29,22 +chrX 1028202 . C . . END=1028202 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,114,1710 +chrX 1028203 . G C, 2305.06 . AS_QUALapprox=|2319|0;AS_VarDP=0|52|0;DP=52;QUALapprox=2319;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,52,0:52:99:0|1:1028201_A_G:2319,157,0,2319,157,2319:1028201:0,0,30,22 +chrX 1028204 . C . . END=1028204 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 1028205 . G A, 2305.06 . AS_QUALapprox=|2319|0;AS_VarDP=0|52|0;DP=53;QUALapprox=2319;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,52,0:52:99:0|1:1028201_A_G:2319,157,0,2319,157,2319:1028201:0,0,31,21 +chrX 1028206 . C . . END=1028212 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 1028213 . G A, 646.64 . AS_QUALapprox=|654|0;AS_VarDP=26|24|0;BaseQRankSum=1.275;DP=51;MQRankSum=0.000;QUALapprox=654;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=0.563;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,24,0:50:99:0|1:1028201_A_G:654,0,683,732,755,1487:1028201:16,10,14,10 +chrX 1028214 . C . . END=1028566 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,109,1558 +chrX 1028567 . T C, 545.64 . AS_QUALapprox=|553|0;AS_VarDP=26|23|0;BaseQRankSum=-0.317;DP=56;MQRankSum=0.000;QUALapprox=553;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=0.561;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:26,23,0:49:99:553,0,672,631,740,1371:11,15,12,11 +chrX 1028568 . T . . END=1028648 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1028649 . G C, 898.64 . AS_QUALapprox=|906|0;AS_VarDP=26|31|0;BaseQRankSum=1.947;DP=59;MQRankSum=0.000;QUALapprox=906;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=0.473;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:26,31,0:57:99:906,0,702,984,796,1780:12,14,15,16 +chrX 1028650 . A . . END=1029273 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1579 +chrX 1029274 . G A, 525.64 . AS_QUALapprox=|533|0;AS_VarDP=24|21|0;BaseQRankSum=0.058;DP=49;MQRankSum=0.000;QUALapprox=533;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=-2.231;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:24,21,0:45:99:533,0,629,605,692,1297:12,12,7,14 +chrX 1029275 . C . . END=1029444 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1029445 . C G, 895.64 . AS_QUALapprox=|903|0;AS_VarDP=20|31|0;BaseQRankSum=2.931;DP=53;MQRankSum=0.000;QUALapprox=903;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=2.384;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:20,31,0:51:99:903,0,462,963,555,1518:10,10,18,13 +chrX 1029446 . G . . END=1029616 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,118,1603 +chrX 1029617 . A G, 1224.64 . AS_QUALapprox=|1232|0;AS_VarDP=27|32|0;BaseQRankSum=0.320;DP=61;MQRankSum=0.000;QUALapprox=1232;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=1.225;VarDP=59 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,32,0:59:99:0|1:1029617_A_G:1232,0,1006,1313,1102,2415:1029617:18,9,12,20 +chrX 1029618 . C . . END=1029624 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1029625 . A G, 1252.64 . AS_QUALapprox=|1260|0;AS_VarDP=28|33|0;BaseQRankSum=-0.461;DP=62;MQRankSum=0.000;QUALapprox=1260;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=0.959;VarDP=61 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,33,0:61:99:0|1:1029617_A_G:1260,0,1035,1344,1134,2478:1029617:18,10,13,20 +chrX 1029626 . G . . END=1029649 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 1029650 . G A, 995.64 . AS_QUALapprox=|1003|0;AS_VarDP=27|36|0;BaseQRankSum=2.037;DP=66;MQRankSum=0.000;QUALapprox=1003;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=-0.472;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:27,36,0:63:99:1003,0,590,1083,698,1781:17,10,17,19 +chrX 1029651 . G . . END=1029805 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 1029806 . T C, 741.64 . AS_QUALapprox=|749|0;AS_VarDP=26|30|0;BaseQRankSum=-0.804;DP=57;MQRankSum=0.000;QUALapprox=749;RAW_GT_COUNT=0,1,0;RAW_MQandDP=204516,57;ReadPosRankSum=-2.054;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:26,30,0:56:99:749,0,687,828,776,1603:9,17,17,13 +chrX 1029807 . G . . END=1029909 GT:DP:GQ:MIN_DP:PL 0/0:52:92:52:0,92,1339 +chrX 1029910 . T . . END=1029911 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,1090 +chrX 1029912 . T . . END=1029912 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,111,1665 +chrX 1029913 . G . . END=1029916 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,585 +chrX 1029917 . A . . END=1029917 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,114,1710 +chrX 1029918 . T . . END=1029918 GT:DP:GQ:MIN_DP:PL 0/0:53:0:53:0,0,638 +chrX 1029919 . T TAAAAAAA, 601.60 . AS_QUALapprox=|609|0;AS_VarDP=23|17|0;BaseQRankSum=0.998;DP=46;MQRankSum=-1.630;QUALapprox=609;RAW_GT_COUNT=0,1,0;RAW_MQandDP=160916,46;ReadPosRankSum=-2.371;VarDP=40 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,17,0:40:99:0|1:1029919_T_TAAAAAAA:609,0,838,678,889,1567:1029919:15,8,11,6 +chrX 1029920 . A . . END=1029933 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,102,1530 +chrX 1029934 . A AAC, 906.60 . AS_QUALapprox=|914|0;AS_VarDP=20|26|0;BaseQRankSum=-0.150;DP=48;MQRankSum=1.662;QUALapprox=914;RAW_GT_COUNT=0,1,0;RAW_MQandDP=168800,48;ReadPosRankSum=-0.024;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:20,26,0:46:99:1|0:1029919_T_TAAAAAAA:914,0,672,973,750,1723:1029919:11,9,17,9 +chrX 1029935 . A . . END=1029937 GT:DP:GQ:MIN_DP:PL 0/0:56:60:56:0,60,1579 +chrX 1029938 . C . . END=1029939 GT:DP:GQ:MIN_DP:PL 0/0:57:0:57:0,0,1340 +chrX 1029940 . T . . END=1030043 GT:DP:GQ:MIN_DP:PL 0/0:56:20:52:0,20,1407 +chrX 1030044 . C T, 807.64 . AS_QUALapprox=|815|0;AS_VarDP=32|29|0;BaseQRankSum=4.026;DP=68;MQRankSum=0.000;QUALapprox=815;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=1.423;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:32,29,0:61:99:815,0,769,911,856,1767:14,18,15,14 +chrX 1030045 . G . . END=1030109 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1030110 . A T, 867.64 . AS_QUALapprox=|875|0;AS_VarDP=26|31|0;BaseQRankSum=-0.245;DP=62;MQRankSum=0.000;QUALapprox=875;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=-0.064;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:26,31,0:57:99:875,0,712,953,806,1759:10,16,8,23 +chrX 1030111 . C . . END=1030168 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 1030169 . G A, 700.64 . AS_QUALapprox=|708|0;AS_VarDP=28|27|0;BaseQRankSum=-0.113;DP=61;MQRankSum=0.000;QUALapprox=708;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=1.297;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:28,27,0:55:99:708,0,758,793,839,1631:12,16,8,19 +chrX 1030170 . C . . END=1030258 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1030259 . A G, 615.64 . AS_QUALapprox=|623|0;AS_VarDP=27|25|0;BaseQRankSum=-1.394;DP=57;MQRankSum=0.000;QUALapprox=623;RAW_GT_COUNT=0,1,0;RAW_MQandDP=202176,57;ReadPosRankSum=0.211;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:27,25,0:52:99:623,0,731,704,807,1510:12,15,10,15 +chrX 1030260 . T . . END=1030892 GT:DP:GQ:MIN_DP:PL 0/0:48:51:48:0,51,974 +chrX 1030893 . T C, 654.64 . AS_QUALapprox=|662|0;AS_VarDP=18|26|0;BaseQRankSum=-2.465;DP=52;MQRankSum=1.248;QUALapprox=662;RAW_GT_COUNT=0,1,0;RAW_MQandDP=185618,52;ReadPosRankSum=1.147;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:18,26,0:44:99:662,0,469,715,547,1262:10,8,14,12 +chrX 1030894 . T . . END=1030968 GT:DP:GQ:MIN_DP:PL 0/0:43:68:43:0,68,1045 +chrX 1030969 . CAA C, 361.60 . AS_QUALapprox=|369|0;AS_VarDP=17|10|0;BaseQRankSum=2.101;DP=34;MQRankSum=0.000;QUALapprox=369;RAW_GT_COUNT=0,1,0;RAW_MQandDP=122400,34;ReadPosRankSum=-0.833;VarDP=27 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:17,10,0:27:99:0|1:1030969_CAA_C:369,0,673,420,704,1124:1030969:6,11,4,6 +chrX 1030972 . A . . END=1030980 GT:DP:GQ:MIN_DP:PL 0/0:30:60:30:0,60,900 +chrX 1030981 . A T, 382.64 . AS_QUALapprox=|390|0;AS_VarDP=20|11|0;BaseQRankSum=0.121;DP=35;MQRankSum=-1.281;QUALapprox=390;RAW_GT_COUNT=0,1,0;RAW_MQandDP=121054,35;ReadPosRankSum=-1.157;VarDP=31 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:20,11,0:31:99:0|1:1030969_CAA_C:390,0,761,451,794,1244:1030969:9,11,5,6 +chrX 1030982 . A . . END=1031018 GT:DP:GQ:MIN_DP:PL 0/0:47:31:45:0,31,1096 +chrX 1031019 . G . . END=1031020 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,1036 +chrX 1031021 . A . . END=1031023 GT:DP:GQ:MIN_DP:PL 0/0:46:90:46:0,90,1350 +chrX 1031024 . G . . END=1031032 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,653 +chrX 1031033 . C A, 517.64 . AS_QUALapprox=|525|0;AS_VarDP=21|14|0;BaseQRankSum=2.288;DP=37;MQRankSum=-1.166;QUALapprox=525;RAW_GT_COUNT=0,1,0;RAW_MQandDP=130810,37;ReadPosRankSum=-0.910;VarDP=35 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,14,0:35:99:0|1:1031033_C_A:525,0,840,588,882,1470:1031033:12,9,7,7 +chrX 1031034 . G . . END=1031034 GT:DP:GQ:MIN_DP:PL 0/0:32:12:32:0,12,843 +chrX 1031035 . A . . END=1031037 GT:DP:GQ:MIN_DP:PL 0/0:36:24:34:0,24,1053 +chrX 1031038 . G GGAGAAAGAGA, 556.60 . AS_QUALapprox=|564|0;AS_VarDP=22|15|0;BaseQRankSum=0.647;DP=39;MQRankSum=-1.697;QUALapprox=564;RAW_GT_COUNT=0,1,0;RAW_MQandDP=136091,39;ReadPosRankSum=-1.846;VarDP=37 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,15,0:37:99:0|1:1031033_C_A:564,0,879,630,924,1554:1031033:13,9,8,7 +chrX 1031039 . A . . END=1031039 GT:DP:GQ:MIN_DP:PL 0/0:34:8:34:0,8,953 +chrX 1031040 . A . . END=1031040 GT:DP:GQ:MIN_DP:PL 0/0:35:90:35:0,90,1350 +chrX 1031041 . G . . END=1031042 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,923 +chrX 1031043 . A . . END=1031047 GT:DP:GQ:MIN_DP:PL 0/0:32:21:30:0,21,904 +chrX 1031048 . A AAAT, 388.60 . AS_QUALapprox=|396|0;AS_VarDP=22|11|0;BaseQRankSum=-0.849;DP=34;MQRankSum=-2.488;QUALapprox=396;RAW_GT_COUNT=0,1,0;RAW_MQandDP=115860,34;ReadPosRankSum=-0.468;VarDP=33 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,11,0:33:99:0|1:1031033_C_A:396,0,891,462,924,1386:1031033:13,9,7,4 +chrX 1031049 . G . . END=1031052 GT:DP:GQ:MIN_DP:PL 0/0:33:27:32:0,27,903 +chrX 1031053 . G GAAAGA, 0.62 . AS_QUALapprox=|394|0;AS_VarDP=22|11|0;DP=34;QUALapprox=394;RAW_GT_COUNT=0,1,0;RAW_MQandDP=115860,34;VarDP=33 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,11,0:33:99:0|1:1031053_G_GAAAGA:394,0,891,246,924,1137:1031053:13,9,0,0 +chrX 1031054 . A . . END=1031058 GT:DP:GQ:MIN_DP:PL 0/0:31:24:31:0,24,919 +chrX 1031059 . GGAGA G, 8.61 . AS_QUALapprox=|306|0;AS_VarDP=24|9|0;DP=34;QUALapprox=306;RAW_GT_COUNT=0,1,0;RAW_MQandDP=115860,34;VarDP=33 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,9,0:33:99:0|1:1031059_GGAGA_G:306,0,981,203,1008,1184:1031059:15,9,0,0 +chrX 1031064 . A . . END=1031067 GT:DP:GQ:MIN_DP:PL 0/0:32:58:32:0,58,968 +chrX 1031068 . C A, 60.04 . AS_QUALapprox=|306|0;AS_VarDP=24|9|0;BaseQRankSum=0.666;DP=34;MQRankSum=-4.695;QUALapprox=306;RAW_GT_COUNT=0,1,0;RAW_MQandDP=113160,34;ReadPosRankSum=-1.589;VarDP=33 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,9,0:33:99:0|1:1031059_GGAGA_G:306,0,981,221,1008,1204:1031059:15,9,1,0 +chrX 1031069 . A . . END=1031078 GT:DP:GQ:MIN_DP:PL 0/0:31:58:31:0,58,978 +chrX 1031079 . G . . END=1031079 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,640 +chrX 1031080 . G . . END=1031082 GT:DP:GQ:MIN_DP:PL 0/0:30:84:30:0,84,1260 +chrX 1031083 . AAAT A, 0.67 . AS_QUALapprox=|7|0;AS_VarDP=24|2|0;BaseQRankSum=0.653;DP=32;MQRankSum=-4.892;QUALapprox=7;RAW_GT_COUNT=0,1,0;RAW_MQandDP=105351,32;ReadPosRankSum=-1.855;VarDP=26 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,2,0:26:7:0|1:1031059_GGAGA_G:7,0,1001,79,1008,1087:1031059:17,7,2,0 +chrX 1031087 . G . . END=1031087 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,0 +chrX 1031088 . A . . END=1031094 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,929 +chrX 1031095 . G GA, 86.60 . AS_QUALapprox=|94|0;AS_VarDP=23|4|0;BaseQRankSum=1.033;DP=33;MQRankSum=-3.588;QUALapprox=94;RAW_GT_COUNT=0,1,0;RAW_MQandDP=106391,33;ReadPosRankSum=-1.912;VarDP=27 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,4,0:27:94:0|1:1031059_GGAGA_G:94,0,953,163,966,1129:1031059:17,6,4,0 +chrX 1031096 . A . . END=1031100 GT:DP:GQ:MIN_DP:PL 0/0:30:62:30:0,62,919 +chrX 1031101 . AG A, 134.60 . AS_QUALapprox=|142|0;AS_VarDP=21|5|0;BaseQRankSum=0.266;DP=32;MQRankSum=-3.782;QUALapprox=142;RAW_GT_COUNT=0,1,0;RAW_MQandDP=100032,32;ReadPosRankSum=-1.529;VarDP=26 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,5,0:26:99:0|1:1031059_GGAGA_G:142,0,866,205,882,1087:1031059:17,4,4,1 +chrX 1031103 . A . . END=1031107 GT:DP:GQ:MIN_DP:PL 0/0:32:45:32:0,45,675 +chrX 1031108 . GA G, 212.60 . AS_QUALapprox=|220|0;AS_VarDP=23|7|0;BaseQRankSum=0.880;DP=36;MQRankSum=-2.481;QUALapprox=220;RAW_GT_COUNT=0,1,0;RAW_MQandDP=111433,36;ReadPosRankSum=-1.092;VarDP=30 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,7,0:30:99:0|1:1031059_GGAGA_G:220,0,944,289,966,1255:1031059:17,6,6,1 +chrX 1031110 . A . . END=1031110 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,721 +chrX 1031111 . A . . END=1031125 GT:DP:GQ:MIN_DP:PL 0/0:32:60:32:0,60,900 +chrX 1031126 . A T, 332.64 . AS_QUALapprox=|340|0;AS_VarDP=20|11|0;BaseQRankSum=-1.816;DP=36;MQRankSum=-1.181;QUALapprox=340;RAW_GT_COUNT=0,1,0;RAW_MQandDP=110749,36;ReadPosRankSum=-0.723;VarDP=31 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:20,11,0:31:99:0|1:1031059_GGAGA_G:340,0,807,400,840,1240:1031059:16,4,7,4 +chrX 1031127 . A . . END=1031143 GT:DP:GQ:MIN_DP:PL 0/0:34:81:34:0,81,982 +chrX 1031144 . G GA, 651.60 . AS_QUALapprox=|659|0;AS_VarDP=14|17|0;BaseQRankSum=0.443;DP=40;MQRankSum=1.482;QUALapprox=659;RAW_GT_COUNT=0,1,0;RAW_MQandDP=125149,40;ReadPosRankSum=-0.119;VarDP=31 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:14,17,0:31:99:1|0:1031033_C_A:659,0,538,702,589,1291:1031033:10,4,13,4 +chrX 1031145 . A . . END=1031151 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,105,1157 +chrX 1031152 . GA G, 621.60 . AS_QUALapprox=|629|0;AS_VarDP=14|16|0;BaseQRankSum=-0.805;DP=40;MQRankSum=1.387;QUALapprox=629;RAW_GT_COUNT=0,1,0;RAW_MQandDP=125149,40;ReadPosRankSum=-0.437;VarDP=30 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:14,16,0:30:99:1|0:1031033_C_A:629,0,541,672,589,1261:1031033:10,4,12,4 +chrX 1031154 . A . . END=1031155 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,108,1620 +chrX 1031156 . A G, 337.64 . AS_QUALapprox=|345|0;AS_VarDP=18|11|0;BaseQRankSum=-0.307;DP=41;MQRankSum=-1.027;QUALapprox=345;RAW_GT_COUNT=0,1,0;RAW_MQandDP=128749,41;ReadPosRankSum=1.777;VarDP=29 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:18,11,0:29:99:0|1:1031059_GGAGA_G:345,0,724,400,757,1157:1031059:14,4,7,4 +chrX 1031157 . G A, 337.64 . AS_QUALapprox=|345|0;AS_VarDP=18|11|0;BaseQRankSum=1.025;DP=41;MQRankSum=-1.027;QUALapprox=345;RAW_GT_COUNT=0,1,0;RAW_MQandDP=128749,41;ReadPosRankSum=1.688;VarDP=29 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:18,11,0:29:99:0|1:1031059_GGAGA_G:345,0,724,400,757,1157:1031059:14,4,7,4 +chrX 1031158 . A . . END=1031170 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,102,1530 +chrX 1031171 . AG A, 331.60 . AS_QUALapprox=|339|0;AS_VarDP=20|11|0;BaseQRankSum=0.497;DP=44;MQRankSum=-1.181;QUALapprox=339;RAW_GT_COUNT=0,1,0;RAW_MQandDP=141468,44;ReadPosRankSum=2.376;VarDP=31 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:20,11,0:31:99:0|1:1031059_GGAGA_G:339,0,808,400,841,1241:1031059:14,6,7,4 +chrX 1031172 . GAGAAAGAAAGAAAGAAAGA G,GAGAAAGAAAGAAAGA,*,GAAAAGAAAGAAAGAAAGAAAGA, 540.01 . AS_QUALapprox=|59|158|0|548|0;AS_VarDP=0|0|0|11|10|0;DP=48;QUALapprox=1063;RAW_GT_COUNT=0,0,1;RAW_MQandDP=155868,48;VarDP=21 GT:AD:DP:GQ:PL:SB 3/4:0,0,0,11,10,0:21:99:1063,1004,1386,905,1076,1499,550,940,665,906,515,454,835,0,834,1121,1360,1362,906,739,1605:0,0,13,8 +chrX 1031174 . GA *,G,AA, 424.04 . AS_QUALapprox=|0|845|318|0;AS_VarDP=10|0|11|0|0;BaseQRankSum=-0.464;DP=44;MQRankSum=-0.161;QUALapprox=845;RAW_GT_COUNT=0,1,0;RAW_MQandDP=141468,44;ReadPosRankSum=0.282;VarDP=21 GT:AD:DP:GQ:PL:SB 0/2:10,0,11,0,0:21:99:845,395,1022,0,635,771,527,800,559,1086,546,1052,811,1104,1356:6,4,7,4 +chrX 1031176 . A *,AGAAAGAAAGAAAG, 422.01 . AS_QUALapprox=|0|509|0;AS_VarDP=11|0|10|0;BaseQRankSum=0.000;DP=44;MQRankSum=0.242;QUALapprox=509;RAW_GT_COUNT=0,1,0;RAW_MQandDP=141468,44;ReadPosRankSum=-0.529;VarDP=21 GT:AD:DP:GQ:PL:SB 0/2:11,0,10,0:21:99:509,402,1041,0,414,865,521,977,696,1263:7,4,6,4 +chrX 1031190 . GA *,G, 449.04 . AS_QUALapprox=|0|804|0;AS_VarDP=18|0|11|0;BaseQRankSum=0.351;DP=45;MQRankSum=-1.027;QUALapprox=804;RAW_GT_COUNT=0,1,0;RAW_MQandDP=145068,45;ReadPosRankSum=2.788;VarDP=29 GT:AD:DP:GQ:PL:SB 0/2:18,0,11,0:29:99:804,420,1275,0,703,660,664,1233,734,1429:9,9,7,4 +chrX 1031192 . A . . END=1031437 GT:DP:GQ:MIN_DP:PL 0/0:54:72:54:0,72,1300 +chrX 1031438 . A G, 728.64 . AS_QUALapprox=|736|0;AS_VarDP=28|29|0;BaseQRankSum=-1.077;DP=60;MQRankSum=0.000;QUALapprox=736;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=-1.462;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:28,29,0:57:99:736,0,742,821,829,1650:14,14,17,12 +chrX 1031439 . G . . END=1031527 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1031528 . G A,GA, 498.60 . AS_QUALapprox=|0|506|0;AS_VarDP=29|1|23|0;BaseQRankSum=-1.913;DP=65;MQRankSum=0.948;QUALapprox=506;RAW_GT_COUNT=0,1,0;RAW_MQandDP=233425,65;ReadPosRankSum=1.502;VarDP=53 GT:AD:DP:GQ:PL:SB 0/2:29,1,23,0:53:99:506,638,1901,0,766,675,649,1681,783,1627:16,13,10,14 +chrX 1031529 . A . . END=1031917 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 1031918 . G C, 645.64 . AS_QUALapprox=|653|0;AS_VarDP=29|26|0;BaseQRankSum=-0.594;DP=56;MQRankSum=0.000;QUALapprox=653;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-1.012;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:29,26,0:55:99:653,0,783,741,861,1601:10,19,12,14 +chrX 1031919 . T . . END=1032006 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1032007 . C T, 795.64 . AS_QUALapprox=|803|0;AS_VarDP=37|30|0;BaseQRankSum=1.910;DP=68;MQRankSum=0.000;QUALapprox=803;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=0.378;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:37,30,0:67:99:803,0,920,913,1010,1923:18,19,11,19 +chrX 1032008 . G . . END=1032086 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1032087 . C G, 878.64 . AS_QUALapprox=|886|0;AS_VarDP=29|33|0;BaseQRankSum=0.578;DP=64;MQRankSum=0.000;QUALapprox=886;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=0.374;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:29,33,0:62:99:886,0,737,973,836,1809:18,11,13,20 +chrX 1032088 . G . . END=1032611 GT:DP:GQ:MIN_DP:PL 0/0:52:88:52:0,88,1499 +chrX 1032612 . G A, 1495.06 . AS_QUALapprox=|1509|0;AS_VarDP=0|46|0;DP=49;QUALapprox=1509;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1509,138,0,1509,138,1509:0,0,22,24 +chrX 1032613 . A . . END=1032899 GT:DP:GQ:MIN_DP:PL 0/0:53:72:53:0,72,1353 +chrX 1032900 . A G, 2194.06 . AS_QUALapprox=|2208|0;AS_VarDP=0|52|0;DP=52;QUALapprox=2208;RAW_GT_COUNT=0,0,1;RAW_MQandDP=186625,52;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,52,0:52:99:0|1:1032900_A_G:2208,156,0,2208,156,2208:1032900:0,0,29,23 +chrX 1032901 . G . . END=1032914 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 1032915 . T G, 2310.06 . AS_QUALapprox=|2324|0;AS_VarDP=0|54|0;DP=54;QUALapprox=2324;RAW_GT_COUNT=0,0,1;RAW_MQandDP=193825,54;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,54,0:54:99:0|1:1032900_A_G:2324,163,0,2324,163,2324:1032900:0,0,30,24 +chrX 1032916 . G . . END=1032978 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 1032979 . G C, 1421.64 . AS_QUALapprox=|1429|0;AS_VarDP=24|36|0;BaseQRankSum=-0.179;DP=63;MQRankSum=-0.782;QUALapprox=1429;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226225,63;ReadPosRankSum=-0.917;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,36,0:60:99:0|1:1032979_G_C:1429,0,888,1501,997,2498:1032979:10,14,20,16 +chrX 1032980 . T . . END=1032983 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1032984 . A G, 1473.64 . AS_QUALapprox=|1481|0;AS_VarDP=24|38|0;BaseQRankSum=-0.542;DP=63;MQRankSum=-0.762;QUALapprox=1481;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226225,63;ReadPosRankSum=-0.817;VarDP=62 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,38,0:62:99:0|1:1032979_G_C:1481,0,882,1554,997,2550:1032979:10,14,20,18 +chrX 1032985 . G . . END=1033024 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1033025 . A T, 895.64 . AS_QUALapprox=|903|0;AS_VarDP=26|35|0;BaseQRankSum=-1.407;DP=64;MQRankSum=-0.829;QUALapprox=903;RAW_GT_COUNT=0,1,0;RAW_MQandDP=229825,64;ReadPosRankSum=0.322;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:26,35,0:61:99:903,0,966,981,1071,2052:9,17,13,22 +chrX 1033026 . G . . END=1033028 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1033029 . C T, 669.64 . AS_QUALapprox=|677|0;AS_VarDP=35|27|0;BaseQRankSum=1.410;DP=62;MQRankSum=0.000;QUALapprox=677;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=-1.001;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:35,27,0:62:99:677,0,1358,782,1439,2221:14,21,10,17 +chrX 1033030 . G . . END=1033182 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,99,1718 +chrX 1033183 . G A, 1916.06 . AS_QUALapprox=|1930|0;AS_VarDP=0|57|0;DP=61;QUALapprox=1930;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1930,171,0,1930,171,1930:0,0,31,26 +chrX 1033184 . A . . END=1033300 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,113,1658 +chrX 1033301 . C T, 762.64 . AS_QUALapprox=|770|0;AS_VarDP=26|28|0;BaseQRankSum=0.958;DP=54;MQRankSum=0.000;QUALapprox=770;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=-2.139;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:26,28,0:54:99:770,0,676,848,760,1608:16,10,22,6 +chrX 1033302 . G . . END=1033363 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 1033364 . C T, 1101.64 . AS_QUALapprox=|1109|0;AS_VarDP=29|29|0;BaseQRankSum=-1.107;DP=61;MQRankSum=-0.966;QUALapprox=1109;RAW_GT_COUNT=0,1,0;RAW_MQandDP=214729,61;ReadPosRankSum=-1.389;VarDP=58 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,29,0:58:99:0|1:1033364_C_T:1109,0,1109,1196,1196,2392:1033364:16,13,16,13 +chrX 1033365 . A G, 1101.64 . AS_QUALapprox=|1109|0;AS_VarDP=29|29|0;BaseQRankSum=-1.039;DP=60;MQRankSum=-0.966;QUALapprox=1109;RAW_GT_COUNT=0,1,0;RAW_MQandDP=211129,60;ReadPosRankSum=-1.120;VarDP=58 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,29,0:58:99:0|1:1033364_C_T:1109,0,1109,1196,1196,2392:1033364:16,13,16,13 +chrX 1033366 . C . . END=1033492 GT:DP:GQ:MIN_DP:PL 0/0:62:55:62:0,55,1533 +chrX 1033493 . A G, 593.64 . AS_QUALapprox=|601|0;AS_VarDP=23|23|0;BaseQRankSum=0.222;DP=48;MQRankSum=-3.267;QUALapprox=601;RAW_GT_COUNT=0,1,0;RAW_MQandDP=155990,48;ReadPosRankSum=0.999;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:23,23,0:46:99:601,0,822,670,891,1561:12,11,11,12 +chrX 1033494 . C . . END=1033517 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,108,1494 +chrX 1033518 . T C, 764.64 . AS_QUALapprox=|772|0;AS_VarDP=29|22|0;BaseQRankSum=-0.641;DP=53;MQRankSum=-3.964;QUALapprox=772;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169015,53;ReadPosRankSum=0.200;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:29,22,0:51:99:772,0,715,858,781,1639:13,16,13,9 +chrX 1033519 . G . . END=1033563 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,118,1612 +chrX 1033564 . T C, 747.64 . AS_QUALapprox=|755|0;AS_VarDP=18|29|0;BaseQRankSum=-2.864;DP=47;MQRankSum=5.901;QUALapprox=755;RAW_GT_COUNT=0,1,0;RAW_MQandDP=127934,47;ReadPosRankSum=2.948;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:18,29,0:47:99:755,0,609,810,696,1505:16,2,15,14 +chrX 1033565 . G . . END=1033593 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,120,1800 +chrX 1033594 . A G, 510.64 . AS_QUALapprox=|518|0;AS_VarDP=32|15|0;BaseQRankSum=1.028;DP=49;MQRankSum=-5.571;QUALapprox=518;RAW_GT_COUNT=0,1,0;RAW_MQandDP=132329,49;ReadPosRankSum=1.629;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:32,15,0:47:99:0|1:1033594_A_G:518,0,1248,615,1293,1908:1033594:18,14,15,0 +chrX 1033595 . C . . END=1033601 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,120,1800 +chrX 1033602 . C T, 570.64 . AS_QUALapprox=|578|0;AS_VarDP=33|17|0;BaseQRankSum=1.678;DP=51;MQRankSum=-5.065;QUALapprox=578;RAW_GT_COUNT=0,1,0;RAW_MQandDP=141689,51;ReadPosRankSum=1.782;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:33,17,0:50:99:0|1:1033594_A_G:578,0,1253,677,1304,1981:1033594:18,15,16,1 +chrX 1033603 . G . . END=1033760 GT:DP:GQ:MIN_DP:PL 0/0:77:34:61:0,34,1651 +chrX 1033761 . A G, 2385.64 . AS_QUALapprox=|2393|0;AS_VarDP=16|93|0;BaseQRankSum=-2.567;DP=110;MQRankSum=0.543;QUALapprox=2393;RAW_GT_COUNT=0,1,0;RAW_MQandDP=370043,110;ReadPosRankSum=0.116;VarDP=109 GT:AD:DP:GQ:PL:SB 0/1:16,93,0:109:99:2393,0,195,2440,473,2914:6,10,41,52 +chrX 1033762 . G . . END=1033903 GT:DP:GQ:MIN_DP:PL 0/0:108:99:108:0,120,1800 +chrX 1033904 . G A, 77.64 . AS_QUALapprox=|85|0;AS_VarDP=68|11|0;BaseQRankSum=0.937;DP=83;MQRankSum=-6.726;QUALapprox=85;RAW_GT_COUNT=0,1,0;RAW_MQandDP=269669,83;ReadPosRankSum=-1.192;VarDP=79 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:68,11,0:79:85:0|1:1033904_G_A:85,0,2284,287,2317,2604:1033904:45,23,1,10 +chrX 1033905 . C . . END=1033909 GT:DP:GQ:MIN_DP:PL 0/0:77:99:77:0,120,1800 +chrX 1033910 . T C, 1090.64 . AS_QUALapprox=|1098|0;AS_VarDP=37|40|0;BaseQRankSum=-0.329;DP=79;MQRankSum=-4.086;QUALapprox=1098;RAW_GT_COUNT=0,1,0;RAW_MQandDP=256268,79;ReadPosRankSum=-1.393;VarDP=77 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:37,40,0:77:99:0|1:1033904_G_A:1098,0,961,1208,1080,2288:1033904:27,10,19,21 +chrX 1033911 . G . . END=1034004 GT:DP:GQ:MIN_DP:PL 0/0:78:99:78:0,120,1800 +chrX 1034005 . A G, 2285.06 . AS_QUALapprox=|2299|0;AS_VarDP=1|76|0;BaseQRankSum=1.315;DP=80;MQRankSum=8.833;QUALapprox=2299;RAW_GT_COUNT=0,0,1;RAW_MQandDP=287001,80;ReadPosRankSum=-0.720;VarDP=77 GT:AD:DP:GQ:PL:SB 1/1:1,76,0:77:99:2299,204,0,2302,226,2324:0,1,41,35 +chrX 1034006 . G . . END=1034238 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1034239 . T C, 1981.06 . AS_QUALapprox=|1995|0;AS_VarDP=0|60|0;DP=62;QUALapprox=1995;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:1995,180,0,1995,180,1995:0,0,33,27 +chrX 1034240 . G . . END=1034343 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 1034344 . T A, 2368.06 . AS_QUALapprox=|2382|0;AS_VarDP=0|61|0;DP=62;QUALapprox=2382;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=61 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:2382,183,0,2382,183,2382:0,0,32,29 +chrX 1034345 . C . . END=1034358 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 1034359 . T C, 693.64 . AS_QUALapprox=|701|0;AS_VarDP=25|29|0;BaseQRankSum=-3.592;DP=55;MQRankSum=0.000;QUALapprox=701;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-0.668;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:25,29,0:54:99:701,0,717,776,804,1580:13,12,15,14 +chrX 1034360 . G . . END=1034414 GT:DP:GQ:MIN_DP:PL 0/0:52:85:52:0,85,1573 +chrX 1034415 . CTTTTTTT C,CTTTTT, 1051.03 . AS_QUALapprox=|0|1065|0;AS_VarDP=3|0|28|0;BaseQRankSum=-0.579;DP=55;MQRankSum=-0.218;QUALapprox=1065;RAW_GT_COUNT=0,0,1;RAW_MQandDP=196000,55;ReadPosRankSum=-0.500;VarDP=31 GT:AD:DP:GQ:PL:SB 2/2:3,0,28,0:31:40:1065,1094,1929,40,138,0,1121,1579,143,1527:2,1,10,18 +chrX 1034422 . T *,C, 400.64 . AS_QUALapprox=|0|408|0;AS_VarDP=25|0|15|0;BaseQRankSum=0.040;DP=54;MQRankSum=-1.239;QUALapprox=408;RAW_GT_COUNT=0,1,0;RAW_MQandDP=192400,54;ReadPosRankSum=1.691;VarDP=40 GT:AD:DP:GQ:PL:SB 0/2:25,0,15,0:40:99:408,477,1851,0,833,832,514,1617,887,1615:9,16,7,8 +chrX 1034423 . T . . END=1034586 GT:DP:GQ:MIN_DP:PL 0/0:49:56:49:0,56,1171 +chrX 1034587 . G GTTT, 502.60 . AS_QUALapprox=|510|0;AS_VarDP=22|14|0;BaseQRankSum=-2.084;DP=43;MQRankSum=0.000;QUALapprox=510;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154800,43;ReadPosRankSum=-1.162;VarDP=36 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,14,0:36:99:0|1:1034587_G_GTTT:510,0,860,576,902,1478:1034587:12,10,2,12 +chrX 1034588 . T . . END=1034591 GT:DP:GQ:MIN_DP:PL 0/0:37:81:37:0,81,1215 +chrX 1034592 . G T, 529.64 . AS_QUALapprox=|537|0;AS_VarDP=23|15|0;BaseQRankSum=-1.197;DP=40;MQRankSum=0.000;QUALapprox=537;RAW_GT_COUNT=0,1,0;RAW_MQandDP=144000,40;ReadPosRankSum=-0.584;VarDP=38 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,15,0:38:99:0|1:1034587_G_GTTT:537,0,887,606,932,1538:1034587:12,11,2,13 +chrX 1034593 . T . . END=1034596 GT:DP:GQ:MIN_DP:PL 0/0:35:84:35:0,84,1260 +chrX 1034597 . G GTT,T, 1304.06 . AS_QUALapprox=|809|575|0;AS_VarDP=0|19|14|0;DP=38;QUALapprox=1321;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;VarDP=33 GT:AD:DP:GQ:PL:SB 1/2:0,19,14,0:33:99:1321,573,512,746,0,828,1329,579,815,1383:0,0,12,21 +chrX 1034598 . T . . END=1034603 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,99,1485 +chrX 1034604 . C . . END=1034604 GT:DP:GQ:MIN_DP:PL 0/0:36:4:36:0,4,1013 +chrX 1034605 . T . . END=1034605 GT:DP:GQ:MIN_DP:PL 0/0:38:79:38:0,79,1211 +chrX 1034606 . A . . END=1034606 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,884 +chrX 1034607 . T . . END=1034871 GT:DP:GQ:MIN_DP:PL 0/0:48:89:48:0,89,1096 +chrX 1034872 . TG T, 496.60 . AS_QUALapprox=|504|0;AS_VarDP=28|14|0;BaseQRankSum=-0.699;DP=44;MQRankSum=0.000;QUALapprox=504;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=0.200;VarDP=42 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,14,0:42:99:0|1:1034872_TG_T:504,0,1128,588,1171,1758:1034872:14,14,8,6 +chrX 1034874 . C . . END=1034875 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,117,1755 +chrX 1034876 . T C, 496.64 . AS_QUALapprox=|504|0;AS_VarDP=28|14|0;BaseQRankSum=-0.715;DP=42;MQRankSum=0.000;QUALapprox=504;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151200,42;ReadPosRankSum=0.193;VarDP=42 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,14,0:42:99:0|1:1034872_TG_T:504,0,1128,588,1171,1758:1034872:14,14,8,6 +chrX 1034877 . G . . END=1035083 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,104,1284 +chrX 1035084 . G A, 1782.06 . AS_QUALapprox=|1796|0;AS_VarDP=0|56|0;DP=60;QUALapprox=1796;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1796,168,0,1796,168,1796:0,0,29,27 +chrX 1035085 . C . . END=1035275 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,114,1544 +chrX 1035276 . G C, 806.64 . AS_QUALapprox=|814|0;AS_VarDP=26|32|0;BaseQRankSum=-1.422;DP=59;MQRankSum=0.000;QUALapprox=814;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=0.868;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:26,32,0:58:99:814,0,660,891,756,1647:13,13,12,20 +chrX 1035277 . A . . END=1035310 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 1035311 . TCC T, 2004.03 . AS_QUALapprox=|2018|0;AS_VarDP=0|47|0;DP=51;QUALapprox=2018;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:2018,142,0,2018,142,2018:0,0,21,26 +chrX 1035314 . C . . END=1035317 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 1035318 . G A, 527.64 . AS_QUALapprox=|535|0;AS_VarDP=30|20|0;BaseQRankSum=2.158;DP=51;MQRankSum=0.000;QUALapprox=535;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-0.238;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:30,20,0:50:99:535,0,802,625,862,1487:10,20,12,8 +chrX 1035319 . T . . END=1035363 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,106,1473 +chrX 1035364 . G A, 578.64 . AS_QUALapprox=|586|0;AS_VarDP=23|23|0;BaseQRankSum=-0.751;DP=50;MQRankSum=0.000;QUALapprox=586;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=-0.132;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:23,23,0:46:99:586,0,622,656,690,1346:7,16,12,11 +chrX 1035365 . A . . END=1035398 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 1035399 . G A, 679.64 . AS_QUALapprox=|687|0;AS_VarDP=20|27|0;BaseQRankSum=-1.717;DP=49;MQRankSum=0.000;QUALapprox=687;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=-0.463;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:20,27,0:47:99:687,0,748,747,829,1576:8,12,12,15 +chrX 1035400 . A . . END=1035406 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,114,1710 +chrX 1035407 . C T, 543.64 . AS_QUALapprox=|551|0;AS_VarDP=28|21|0;BaseQRankSum=2.389;DP=51;MQRankSum=0.000;QUALapprox=551;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-0.172;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:28,21,0:49:99:551,0,1071,636,1134,1770:13,15,9,12 +chrX 1035408 . G . . END=1035569 GT:DP:GQ:MIN_DP:PL 0/0:48:98:48:0,98,1266 +chrX 1035570 . A G, 605.64 . AS_QUALapprox=|613|0;AS_VarDP=13|24|0;BaseQRankSum=-1.210;DP=42;MQRankSum=0.000;QUALapprox=613;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151200,42;ReadPosRankSum=-2.150;VarDP=37 GT:AD:DP:GQ:PL:SB 0/1:13,24,0:37:99:613,0,322,652,393,1045:7,6,12,12 +chrX 1035571 . T . . END=1035579 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,102,1530 +chrX 1035580 . G C, 1519.06 . AS_QUALapprox=|1533|0;AS_VarDP=0|39|0;DP=39;QUALapprox=1533;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140400,39;VarDP=39 GT:AD:DP:GQ:PL:SB 1/1:0,39,0:39:99:1533,117,0,1533,117,1533:0,0,19,20 +chrX 1035581 . C . . END=1035623 GT:DP:GQ:MIN_DP:PL 0/0:40:93:40:0,93,1151 +chrX 1035624 . G A, 421.64 . AS_QUALapprox=|429|0;AS_VarDP=20|17|0;BaseQRankSum=0.682;DP=38;MQRankSum=0.000;QUALapprox=429;RAW_GT_COUNT=0,1,0;RAW_MQandDP=136800,38;ReadPosRankSum=-0.870;VarDP=37 GT:AD:DP:GQ:PL:SB 0/1:20,17,0:37:99:429,0,501,489,552,1041:11,9,9,8 +chrX 1035625 . C . . END=1035636 GT:DP:GQ:MIN_DP:PL 0/0:35:81:35:0,81,1215 +chrX 1035637 . G GA, 776.03 . AS_QUALapprox=|790|0;AS_VarDP=1|34|0;BaseQRankSum=-0.563;DP=48;MQRankSum=0.000;QUALapprox=790;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172009,48;ReadPosRankSum=-0.545;VarDP=35 GT:AD:DP:GQ:PL:SB 1/1:1,34,0:35:77:790,77,0,793,100,816:1,0,15,19 +chrX 1035638 . A . . END=1036075 GT:DP:GQ:MIN_DP:PL 0/0:47:39:46:0,39,1195 +chrX 1036076 . G A, 1580.06 . AS_QUALapprox=|1594|0;AS_VarDP=0|47|0;DP=49;QUALapprox=1594;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1594,141,0,1594,141,1594:0,0,21,26 +chrX 1036077 . G . . END=1036405 GT:DP:GQ:MIN_DP:PL 0/0:52:62:52:0,62,1211 +chrX 1036406 . AAAAC A, 676.60 . AS_QUALapprox=|684|0;AS_VarDP=34|19|0;BaseQRankSum=-0.395;DP=61;MQRankSum=0.000;QUALapprox=684;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=0.659;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:34,19,0:53:99:684,0,1362,786,1420,2206:19,15,11,8 +chrX 1036411 . A . . END=1036541 GT:DP:GQ:MIN_DP:PL 0/0:49:20:43:0,20,1187 +chrX 1036542 . T . . END=1036542 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,1145 +chrX 1036543 . C . . END=1036733 GT:DP:GQ:MIN_DP:PL 0/0:42:27:37:0,27,936 +chrX 1036734 . A G, 1604.06 . AS_QUALapprox=|1618|0;AS_VarDP=0|53|0;DP=53;QUALapprox=1618;RAW_GT_COUNT=0,0,1;RAW_MQandDP=184554,53;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1618,158,0,1618,158,1618:0,0,29,24 +chrX 1036735 . T . . END=1036853 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 1036854 . G A, 700.64 . AS_QUALapprox=|708|0;AS_VarDP=22|26|0;BaseQRankSum=1.642;DP=49;MQRankSum=0.000;QUALapprox=708;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=0.404;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:22,26,0:48:99:708,0,530,774,608,1382:10,12,16,10 +chrX 1036855 . T . . END=1036989 GT:DP:GQ:MIN_DP:PL 0/0:40:61:40:0,61,1126 +chrX 1036990 . CT C, 67.60 . AS_QUALapprox=|75|0;AS_VarDP=21|8|0;BaseQRankSum=-1.524;DP=38;MQRankSum=-2.159;QUALapprox=75;RAW_GT_COUNT=0,1,0;RAW_MQandDP=126530,38;ReadPosRankSum=0.586;VarDP=29 GT:AD:DP:GQ:PL:SB 0/1:21,8,0:29:75:75,0,776,139,799,938:6,15,2,6 +chrX 1036992 . T . . END=1036994 GT:DP:GQ:MIN_DP:PL 0/0:35:75:35:0,75,1125 +chrX 1036995 . T TC, 578.60 . AS_QUALapprox=|586|0;AS_VarDP=15|20|0;BaseQRankSum=1.090;DP=37;MQRankSum=1.783;QUALapprox=586;RAW_GT_COUNT=0,1,0;RAW_MQandDP=122930,37;ReadPosRankSum=-0.634;VarDP=35 GT:AD:DP:GQ:PL:SB 0/1:15,20,0:35:99:586,0,419,631,479,1109:7,8,5,15 +chrX 1036996 . T . . END=1037027 GT:DP:GQ:MIN_DP:PL 0/0:32:64:32:0,64,784 +chrX 1037028 . G C, 997.06 . AS_QUALapprox=|1011|0;AS_VarDP=0|32|0;DP=35;QUALapprox=1011;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108596,35;VarDP=32 GT:AD:DP:GQ:PL:SB 1/1:0,32,0:32:94:1011,94,0,1011,94,1011:0,0,9,23 +chrX 1037029 . T . . END=1037076 GT:DP:GQ:MIN_DP:PL 0/0:33:74:33:0,74,997 +chrX 1037077 . T TC, 421.60 . AS_QUALapprox=|429|0;AS_VarDP=25|12|0;BaseQRankSum=-1.577;DP=40;MQRankSum=-2.311;QUALapprox=429;RAW_GT_COUNT=0,1,0;RAW_MQandDP=121303,40;ReadPosRankSum=0.285;VarDP=37 GT:AD:DP:GQ:PL:SB 0/1:25,12,0:37:99:429,0,1002,504,1038,1542:9,16,4,8 +chrX 1037078 . C . . END=1037082 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,102,1530 +chrX 1037083 . A T,C, 1542.10 . AS_QUALapprox=|1094|563|0;AS_VarDP=0|25|14|0;DP=41;QUALapprox=1559;RAW_GT_COUNT=0,0,1;RAW_MQandDP=120903,41;VarDP=39 GT:AD:DP:GQ:PL:SB 1/2:0,25,14,0:39:99:1559,536,465,1023,0,996,1561,539,1032,1569:0,0,13,26 +chrX 1037084 . C . . END=1037098 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,105,1221 +chrX 1037099 . T C, 899.64 . AS_QUALapprox=|907|0;AS_VarDP=16|23|0;BaseQRankSum=2.639;DP=40;MQRankSum=2.731;QUALapprox=907;RAW_GT_COUNT=0,1,0;RAW_MQandDP=115222,40;ReadPosRankSum=0.514;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:16,23,0:39:99:907,0,484,956,553,1509:4,12,10,13 +chrX 1037100 . C . . END=1037148 GT:DP:GQ:MIN_DP:PL 0/0:39:80:39:0,80,1146 +chrX 1037149 . C A, 1803.06 . AS_QUALapprox=|1817|0;AS_VarDP=0|43|0;DP=44;QUALapprox=1817;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129271,44;VarDP=43 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,43,0:43:99:0|1:1037149_C_A:1817,129,0,1817,129,1817:1037149:0,0,21,22 +chrX 1037150 . G . . END=1037158 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,111,1300 +chrX 1037159 . T A, 1778.06 . AS_QUALapprox=|1792|0;AS_VarDP=0|42|0;DP=43;QUALapprox=1792;RAW_GT_COUNT=0,0,1;RAW_MQandDP=127086,43;VarDP=42 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,42,0:42:99:0|1:1037149_C_A:1792,126,0,1792,126,1792:1037149:0,0,21,21 +chrX 1037160 . T . . END=1037244 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,106,1245 +chrX 1037245 . G A, 566.64 . AS_QUALapprox=|574|0;AS_VarDP=28|21|0;BaseQRankSum=1.679;DP=51;MQRankSum=0.907;QUALapprox=574;RAW_GT_COUNT=0,1,0;RAW_MQandDP=181600,51;ReadPosRankSum=1.961;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:28,21,0:49:99:574,0,735,657,798,1455:20,8,12,9 +chrX 1037246 . G . . END=1037854 GT:DP:GQ:MIN_DP:PL 0/0:37:37:37:0,37,1038 +chrX 1037855 . TTATATATATATATATA T, 454.60 . AS_QUALapprox=|462|0;AS_VarDP=6|13|0;BaseQRankSum=-0.501;DP=41;MQRankSum=2.764;QUALapprox=462;RAW_GT_COUNT=0,1,0;RAW_MQandDP=141936,41;ReadPosRankSum=2.170;VarDP=19 GT:AD:DP:GQ:PL:SB 0/1:6,13,0:19:99:462,0,170,480,211,691:5,1,5,8 +chrX 1037872 . T . . END=1038067 GT:DP:GQ:MIN_DP:PL 0/0:26:25:20:0,25,596 +chrX 1038068 . T C, 1440.06 . AS_QUALapprox=|1454|0;AS_VarDP=0|45|0;DP=49;QUALapprox=1454;RAW_GT_COUNT=0,0,1;RAW_MQandDP=175609,49;VarDP=45 GT:AD:DP:GQ:PL:SB 1/1:0,45,0:45:99:1454,135,0,1454,135,1454:0,0,27,18 +chrX 1038069 . A . . END=1038216 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,114,1519 +chrX 1038217 . C T, 547.64 . AS_QUALapprox=|555|0;AS_VarDP=24|21|0;BaseQRankSum=0.794;DP=49;MQRankSum=0.000;QUALapprox=555;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=0.239;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:24,21,0:45:99:555,0,627,627,691,1317:9,15,13,8 +chrX 1038218 . G . . END=1039956 GT:DP:GQ:MIN_DP:PL 0/0:57:71:57:0,71,1142 +chrX 1039957 . C A, 610.64 . AS_QUALapprox=|618|0;AS_VarDP=33|28|0;BaseQRankSum=-1.560;DP=61;MQRankSum=0.000;QUALapprox=618;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-1.651;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:33,28,0:61:99:618,0,842,716,925,1642:18,15,14,14 +chrX 1039958 . C . . END=1040002 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1040003 . A G, 1683.06 . AS_QUALapprox=|1697|0;AS_VarDP=0|59|0;DP=62;QUALapprox=1697;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1697,174,0,1697,174,1697:0,0,26,33 +chrX 1040004 . G . . END=1040201 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1040202 . C A, 889.64 . AS_QUALapprox=|897|0;AS_VarDP=36|34|0;BaseQRankSum=-0.027;DP=72;MQRankSum=0.000;QUALapprox=897;RAW_GT_COUNT=0,1,0;RAW_MQandDP=259200,72;ReadPosRankSum=0.635;VarDP=70 GT:AD:DP:GQ:PL:SB 0/1:36,34,0:70:99:897,0,952,1005,1053,2058:27,9,20,14 +chrX 1040203 . C . . END=1040714 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 1040715 . C T, 1118.64 . AS_QUALapprox=|1126|0;AS_VarDP=28|40|0;BaseQRankSum=2.022;DP=69;MQRankSum=0.000;QUALapprox=1126;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=-0.891;VarDP=68 GT:AD:DP:GQ:PL:SB 0/1:28,40,0:68:99:1126,0,654,1210,774,1984:14,14,21,19 +chrX 1040716 . A . . END=1040741 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 1040742 . C T, 1072.64 . AS_QUALapprox=|1080|0;AS_VarDP=28|37|0;BaseQRankSum=4.223;DP=70;MQRankSum=0.000;QUALapprox=1080;RAW_GT_COUNT=0,1,0;RAW_MQandDP=252000,70;ReadPosRankSum=0.404;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:28,37,0:65:99:1080,0,647,1164,758,1922:13,15,20,17 +chrX 1040743 . G . . END=1040757 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 1040758 . T C, 1057.64 . AS_QUALapprox=|1065|0;AS_VarDP=29|38|0;BaseQRankSum=1.722;DP=69;MQRankSum=0.000;QUALapprox=1065;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=1.247;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:29,38,0:67:99:1065,0,725,1152,838,1990:14,15,20,18 +chrX 1040759 . T . . END=1041635 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,108,1484 +chrX 1041636 . TTATC T, 835.60 . AS_QUALapprox=|843|0;AS_VarDP=27|22|0;BaseQRankSum=0.000;DP=54;MQRankSum=0.000;QUALapprox=843;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=0.757;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,22,0:49:99:0|1:1041636_TTATC_T:843,0,1067,924,1134,2058:1041636:12,15,12,10 +chrX 1041641 . T . . END=1041651 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 1041652 . TTGTC T, 832.60 . AS_QUALapprox=|840|0;AS_VarDP=28|22|0;BaseQRankSum=0.000;DP=51;MQRankSum=0.000;QUALapprox=840;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=0.473;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,22,0:50:99:0|1:1041636_TTATC_T:840,0,1109,924,1176,2100:1041636:12,16,12,10 +chrX 1041657 . T . . END=1041707 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,119,1549 +chrX 1041708 . C CT, 704.60 . AS_QUALapprox=|712|0;AS_VarDP=27|19|0;BaseQRankSum=-0.349;DP=47;MQRankSum=0.000;QUALapprox=712;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=-0.609;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,19,0:46:99:0|1:1041708_C_CT:712,0,1077,793,1134,1927:1041708:11,16,11,8 +chrX 1041709 . A . . END=1041710 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,114,1710 +chrX 1041711 . C CATA, 830.60 . AS_QUALapprox=|838|0;AS_VarDP=27|22|0;BaseQRankSum=-0.913;DP=49;MQRankSum=0.000;QUALapprox=838;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=-0.480;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,22,0:49:99:0|1:1041708_C_CT:838,0,1068,919,1134,2053:1041708:11,16,13,9 +chrX 1041712 . T . . END=1041712 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,120,1800 +chrX 1041713 . G A, 793.64 . AS_QUALapprox=|801|0;AS_VarDP=27|21|0;BaseQRankSum=-2.381;DP=48;MQRankSum=0.000;QUALapprox=801;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=-0.904;VarDP=48 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,21,0:48:99:0|1:1041708_C_CT:801,0,1071,882,1134,2016:1041708:11,16,12,9 +chrX 1041714 . T . . END=1041734 GT:DP:GQ:MIN_DP:PL 0/0:44:88:44:0,88,1254 +chrX 1041735 . GTATC GTATCTATC,G, 1776.02 . AS_QUALapprox=|1079|786|0;AS_VarDP=0|24|19|0;DP=47;QUALapprox=1793;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;VarDP=43 GT:AD:DP:GQ:PL:SB 1/2:0,24,19,0:43:99:1793,786,714,1007,0,1118,1805,798,1097,1883:0,0,22,21 +chrX 1041740 . T . . END=1041752 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,104,1341 +chrX 1041753 . G GTCTA, 712.60 . AS_QUALapprox=|720|0;AS_VarDP=26|19|0;BaseQRankSum=-2.333;DP=45;MQRankSum=0.000;QUALapprox=720;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=0.913;VarDP=45 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,19,0:45:99:0|1:1041708_C_CT:720,0,1024,798,1081,1879:1041708:12,14,11,8 +chrX 1041754 . T . . END=1041760 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,102,1530 +chrX 1041761 . G GTCTA, 2039.03 . AS_QUALapprox=|2053|0;AS_VarDP=0|46|0;DP=46;QUALapprox=2053;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:2053,138,0,2053,138,2053:0,0,22,24 +chrX 1041762 . T . . END=1041825 GT:DP:GQ:MIN_DP:PL 0/0:50:51:50:0,51,1151 +chrX 1041826 . C G, 614.64 . AS_QUALapprox=|622|0;AS_VarDP=27|17|0;BaseQRankSum=-0.549;DP=45;MQRankSum=0.000;QUALapprox=622;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=1.386;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,17,0:44:99:0|1:1041826_C_G:622,0,1052,704,1103,1807:1041826:13,14,10,7 +chrX 1041827 . T . . END=1041837 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,120,1800 +chrX 1041838 . GTATC G, 643.60 . AS_QUALapprox=|651|0;AS_VarDP=28|18|0;BaseQRankSum=0.855;DP=46;MQRankSum=0.000;QUALapprox=651;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=1.542;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,18,0:46:99:0|1:1041826_C_G:651,0,1091,735,1145,1880:1041826:14,14,11,7 +chrX 1041843 . T . . END=1041870 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,120,1800 +chrX 1041871 . T TATCA, 975.60 . AS_QUALapprox=|983|0;AS_VarDP=22|26|0;BaseQRankSum=0.194;DP=50;MQRankSum=0.000;QUALapprox=983;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=0.880;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:22,26,0:48:99:983,0,815,1049,894,1943:13,9,14,12 +chrX 1041872 . A . . END=1041920 GT:DP:GQ:MIN_DP:PL 0/0:41:84:41:0,84,1251 +chrX 1041921 . A G, 410.64 . AS_QUALapprox=|418|0;AS_VarDP=13|18|0;BaseQRankSum=-1.094;DP=34;MQRankSum=0.000;QUALapprox=418;RAW_GT_COUNT=0,1,0;RAW_MQandDP=122400,34;ReadPosRankSum=-0.921;VarDP=31 GT:AD:DP:GQ:PL:SB 0/1:13,18,0:31:99:418,0,472,457,525,982:7,6,9,9 +chrX 1041922 . TATCA T, 394.60 . AS_QUALapprox=|402|0;AS_VarDP=20|11|0;BaseQRankSum=-1.128;DP=38;MQRankSum=0.000;QUALapprox=402;RAW_GT_COUNT=0,1,0;RAW_MQandDP=136800,38;ReadPosRankSum=2.106;VarDP=31 GT:AD:DP:GQ:PL:SB 0/1:20,11,0:31:99:402,0,777,462,810,1272:9,11,6,5 +chrX 1041927 . A . . END=1042230 GT:DP:GQ:MIN_DP:PL 0/0:52:42:52:0,42,1136 +chrX 1042231 . ATCTG A, 619.60 . AS_QUALapprox=|627|0;AS_VarDP=29|17|0;BaseQRankSum=-1.776;DP=50;MQRankSum=0.000;QUALapprox=627;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=0.609;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,17,0:46:99:0|1:1042231_ATCTG_A:627,0,1156,714,1207,1921:1042231:12,17,8,9 +chrX 1042236 . T . . END=1042250 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,110,1354 +chrX 1042251 . ATCTC A, 701.60 . AS_QUALapprox=|709|0;AS_VarDP=26|19|0;BaseQRankSum=-1.430;DP=47;MQRankSum=0.000;QUALapprox=709;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=-0.966;VarDP=45 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,19,0:45:99:0|1:1042231_ATCTG_A:709,0,1034,787,1092,1879:1042231:12,14,10,9 +chrX 1042255 . C *,G, 742.04 . AS_QUALapprox=|0|758|0;AS_VarDP=0|19|25|0;DP=46;QUALapprox=1471;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;VarDP=44 GT:AD:DP:GQ:PL:SB 1/2:0,19,25,0:44:99:1471,752,992,787,0,713,1524,919,788,1654:0,0,22,22 +chrX 1042256 . T . . END=1042307 GT:DP:GQ:MIN_DP:PL 0/0:41:65:41:0,65,1172 +chrX 1042308 . C CATCT, 682.60 . AS_QUALapprox=|690|0;AS_VarDP=22|18|0;BaseQRankSum=-0.078;DP=43;MQRankSum=0.000;QUALapprox=690;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154800,43;ReadPosRankSum=-0.694;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:22,18,0:40:99:690,0,818,756,872,1628:14,8,9,9 +chrX 1042309 . A . . END=1042388 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,99,1373 +chrX 1042389 . G A, 810.64 . AS_QUALapprox=|818|0;AS_VarDP=18|22|0;BaseQRankSum=-0.904;DP=43;MQRankSum=0.000;QUALapprox=818;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154800,43;ReadPosRankSum=-1.014;VarDP=40 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:18,22,0:40:99:0|1:1042389_G_A:818,0,690,872,756,1629:1042389:11,7,14,8 +chrX 1042390 . T . . END=1042406 GT:DP:GQ:MIN_DP:PL 0/0:38:94:38:0,94,1152 +chrX 1042407 . C CTGTT, 766.60 . AS_QUALapprox=|774|0;AS_VarDP=22|20|0;BaseQRankSum=0.684;DP=42;MQRankSum=0.000;QUALapprox=774;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151200,42;ReadPosRankSum=-1.172;VarDP=42 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,20,0:42:99:0|1:1042389_G_A:774,0,864,840,924,1764:1042389:13,9,11,9 +chrX 1042408 . T . . END=1042415 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,117,1755 +chrX 1042416 . C CATCT, 866.60 . AS_QUALapprox=|874|0;AS_VarDP=22|23|0;BaseQRankSum=0.896;DP=45;MQRankSum=0.000;QUALapprox=874;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=-1.840;VarDP=45 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,23,0:45:99:0|1:1042389_G_A:874,0,855,940,924,1864:1042389:13,9,13,10 +chrX 1042417 . A . . END=1042439 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,110,1265 +chrX 1042440 . GTCCA G,GTCCATCCA, 1676.02 . AS_QUALapprox=|913|833|0;AS_VarDP=0|23|19|0;DP=46;QUALapprox=1693;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;VarDP=42 GT:AD:DP:GQ:PL:SB 1/2:0,23,19,0:42:99:1693,780,802,917,0,860,1702,830,923,1744:0,0,26,16 +chrX 1042445 . T . . END=1042495 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,113,1570 +chrX 1042496 . A G, 682.64 . AS_QUALapprox=|690|0;AS_VarDP=27|27|0;BaseQRankSum=0.825;DP=56;MQRankSum=0.000;QUALapprox=690;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=0.225;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:27,27,0:54:99:690,0,678,771,758,1528:13,14,17,10 +chrX 1042497 . T . . END=1042579 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 1042580 . G A, 830.64 . AS_QUALapprox=|838|0;AS_VarDP=28|30|0;BaseQRankSum=0.510;DP=60;MQRankSum=0.000;QUALapprox=838;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=0.374;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:28,30,0:58:99:838,0,759,923,849,1772:14,14,13,17 +chrX 1042581 . T . . END=1042969 GT:DP:GQ:MIN_DP:PL 0/0:58:72:58:0,72,1385 +chrX 1042970 . C CTTTAT, 659.60 . AS_QUALapprox=|667|0;AS_VarDP=21|18|0;BaseQRankSum=0.963;DP=47;MQRankSum=0.000;QUALapprox=667;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=0.776;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:21,18,0:39:99:667,0,818,731,872,1603:6,15,6,12 +chrX 1042971 . T . . END=1042988 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,103,1381 +chrX 1042989 . T . . END=1042989 GT:DP:GQ:MIN_DP:PL 0/0:47:2:47:0,2,1295 +chrX 1042990 . T . . END=1043154 GT:DP:GQ:MIN_DP:PL 0/0:46:60:46:0,60,1251 +chrX 1043155 . T C, 1533.06 . AS_QUALapprox=|1547|0;AS_VarDP=0|48|0;DP=49;QUALapprox=1547;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=48 GT:AD:DP:GQ:PL:SB 1/1:0,48,0:48:99:1547,144,0,1547,144,1547:0,0,19,29 +chrX 1043156 . C . . END=1043586 GT:DP:GQ:MIN_DP:PL 0/0:47:36:40:0,36,1096 +chrX 1043587 . A G, 2289.06 . AS_QUALapprox=|2303|0;AS_VarDP=0|53|0;DP=53;QUALapprox=2303;RAW_GT_COUNT=0,0,1;RAW_MQandDP=184476,53;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,53,0:53:99:0|1:1043587_A_G:2303,159,0,2303,159,2303:1043587:0,0,31,22 +chrX 1043588 . G . . END=1043607 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 1043608 . GATCGAGACCATCCTGGCTAACATGGTGAA G, 2248.03 . AS_QUALapprox=|2262|0;AS_VarDP=0|51|0;DP=53;QUALapprox=2262;RAW_GT_COUNT=0,0,1;RAW_MQandDP=184908,53;VarDP=51 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,51,0:51:99:0|1:1043587_A_G:2262,154,0,2262,154,2262:1043587:0,0,31,20 +chrX 1043638 . A . . END=1043759 GT:DP:GQ:MIN_DP:PL 0/0:45:55:45:0,55,1167 +chrX 1043760 . A C, 506.64 . AS_QUALapprox=|514|0;AS_VarDP=22|20|0;BaseQRankSum=-0.957;DP=42;MQRankSum=-0.592;QUALapprox=514;RAW_GT_COUNT=0,1,0;RAW_MQandDP=148353,42;ReadPosRankSum=-0.209;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:22,20,0:42:99:514,0,813,580,872,1453:10,12,9,11 +chrX 1043761 . G . . END=1043770 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,100,1171 +chrX 1043771 . C T, 525.64 . AS_QUALapprox=|533|0;AS_VarDP=20|19|0;BaseQRankSum=2.060;DP=39;MQRankSum=0.517;QUALapprox=533;RAW_GT_COUNT=0,1,0;RAW_MQandDP=137553,39;ReadPosRankSum=1.265;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:20,19,0:39:99:533,0,755,593,812,1406:9,11,8,11 +chrX 1043772 . A . . END=1043813 GT:DP:GQ:MIN_DP:PL 0/0:38:77:38:0,77,1035 +chrX 1043814 . CAA C, 732.60 . AS_QUALapprox=|740|0;AS_VarDP=15|25|0;BaseQRankSum=-0.626;DP=51;MQRankSum=-0.723;QUALapprox=740;RAW_GT_COUNT=0,1,0;RAW_MQandDP=181681,51;ReadPosRankSum=-0.211;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:15,25,0:40:99:740,0,358,785,434,1219:6,9,12,13 +chrX 1043817 . A . . END=1043851 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,111,1498 +chrX 1043852 . G C, 492.64 . AS_QUALapprox=|500|0;AS_VarDP=28|21|0;BaseQRankSum=0.318;DP=53;MQRankSum=0.000;QUALapprox=500;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=-0.495;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:28,21,0:49:99:500,0,698,582,760,1342:15,13,10,11 +chrX 1043853 . A . . END=1044096 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,112,1712 +chrX 1044097 . T C, 1892.06 . AS_QUALapprox=|1906|0;AS_VarDP=0|59|0;DP=62;QUALapprox=1906;RAW_GT_COUNT=0,0,1;RAW_MQandDP=221200,62;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1906,177,0,1906,177,1906:0,0,31,28 +chrX 1044098 . C . . END=1044257 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,108,1525 +chrX 1044258 . A G, 830.64 . AS_QUALapprox=|838|0;AS_VarDP=29|24|0;BaseQRankSum=-1.412;DP=55;MQRankSum=-0.098;QUALapprox=838;RAW_GT_COUNT=0,1,0;RAW_MQandDP=189388,55;ReadPosRankSum=-0.772;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,24,0:53:99:0|1:1044258_A_G:838,0,1124,925,1197,2122:1044258:16,13,9,15 +chrX 1044259 . T . . END=1044276 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1044277 . T C, 877.64 . AS_QUALapprox=|885|0;AS_VarDP=31|26|0;BaseQRankSum=-2.905;DP=60;MQRankSum=-0.135;QUALapprox=885;RAW_GT_COUNT=0,1,0;RAW_MQandDP=203388,60;ReadPosRankSum=-0.289;VarDP=57 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:31,26,0:57:99:0|1:1044258_A_G:885,0,1182,979,1260,2239:1044258:18,13,9,17 +chrX 1044278 . G . . END=1044367 GT:DP:GQ:MIN_DP:PL 0/0:56:93:56:0,93,1395 +chrX 1044368 . CT C, 855.03 . AS_QUALapprox=|869|0;AS_VarDP=1|33|0;BaseQRankSum=-0.578;DP=48;MQRankSum=0.000;QUALapprox=869;RAW_GT_COUNT=0,0,1;RAW_MQandDP=171601,48;ReadPosRankSum=-0.612;VarDP=34 GT:AD:DP:GQ:PL:SB 1/1:1,33,0:34:95:869,95,0,871,97,873:1,0,16,17 +chrX 1044370 . T . . END=1044396 GT:DP:GQ:MIN_DP:PL 0/0:37:27:32:0,27,887 +chrX 1044397 . G A,C, 888.06 . AS_QUALapprox=|902|30|0;AS_VarDP=0|30|3|0;DP=34;QUALapprox=902;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=33 GT:AD:DP:GQ:PL:SB 1/1:0,30,3,0:33:68:902,89,0,880,68,872,902,89,880,901:0,0,17,16 +chrX 1044398 . C . . END=1044451 GT:DP:GQ:MIN_DP:PL 0/0:37:91:37:0,91,1007 +chrX 1044452 . G A, 591.64 . AS_QUALapprox=|599|0;AS_VarDP=19|23|0;BaseQRankSum=0.511;DP=43;MQRankSum=-0.861;QUALapprox=599;RAW_GT_COUNT=0,1,0;RAW_MQandDP=152834,43;ReadPosRankSum=0.619;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:19,23,0:42:99:599,0,445,656,514,1169:13,6,6,17 +chrX 1044453 . C . . END=1044510 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,112,1340 +chrX 1044511 . A G, 739.64 . AS_QUALapprox=|747|0;AS_VarDP=25|30|0;BaseQRankSum=-2.270;DP=57;MQRankSum=0.000;QUALapprox=747;RAW_GT_COUNT=0,1,0;RAW_MQandDP=204625,57;ReadPosRankSum=-0.964;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:25,30,0:55:99:747,0,684,823,773,1596:7,18,19,11 +chrX 1044512 . C . . END=1045393 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,102,1559 +chrX 1045394 . AAC A, 914.60 . AS_QUALapprox=|922|0;AS_VarDP=26|24|0;BaseQRankSum=-1.429;DP=55;MQRankSum=0.000;QUALapprox=922;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-1.931;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,24,0:50:99:0|1:1045394_AAC_A:922,0,1019,1001,1092,2092:1045394:11,15,10,14 +chrX 1045397 . A . . END=1045397 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 1045398 . G T, 914.64 . AS_QUALapprox=|922|0;AS_VarDP=26|24|0;BaseQRankSum=0.336;DP=51;MQRankSum=0.000;QUALapprox=922;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-1.622;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,24,0:50:99:0|1:1045394_AAC_A:922,0,1019,1001,1092,2092:1045394:11,15,10,14 +chrX 1045399 . G . . END=1046211 GT:DP:GQ:MIN_DP:PL 0/0:60:62:60:0,62,1420 +chrX 1046212 . C T, 551.64 . AS_QUALapprox=|559|0;AS_VarDP=29|21|0;BaseQRankSum=1.624;DP=50;MQRankSum=0.000;QUALapprox=559;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=0.020;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:29,21,0:50:99:559,0,746,645,809,1454:14,15,13,8 +chrX 1046213 . T . . END=1046455 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,104,1573 +chrX 1046456 . T C, 772.64 . AS_QUALapprox=|780|0;AS_VarDP=40|32|0;BaseQRankSum=-0.574;DP=73;MQRankSum=0.000;QUALapprox=780;RAW_GT_COUNT=0,1,0;RAW_MQandDP=262800,73;ReadPosRankSum=-1.423;VarDP=72 GT:AD:DP:GQ:PL:SB 0/1:40,32,0:72:99:780,0,1060,900,1155,2055:23,17,14,18 +chrX 1046457 . G . . END=1046849 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,109,1386 +chrX 1046850 . A G, 611.64 . AS_QUALapprox=|619|0;AS_VarDP=25|19|0;BaseQRankSum=-1.980;DP=52;MQRankSum=0.000;QUALapprox=619;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=-2.444;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,19,0:44:99:0|1:1046850_A_G:619,0,962,694,1019,1713:1046850:11,14,5,14 +chrX 1046851 . G . . END=1046870 GT:DP:GQ:MIN_DP:PL 0/0:39:93:39:0,93,1121 +chrX 1046871 . T A,TA, 502.60 . AS_QUALapprox=|0|510|0;AS_VarDP=22|2|14|0;BaseQRankSum=-1.168;DP=46;MQRankSum=-1.119;QUALapprox=510;RAW_GT_COUNT=0,1,0;RAW_MQandDP=163481,46;ReadPosRankSum=-0.873;VarDP=38 GT:AD:DP:GQ:PL:SB 0/2:22,2,14,0:38:99:510,546,1167,0,651,995,587,1224,896,1431:13,9,7,9 +chrX 1046872 . C A, 502.64 . AS_QUALapprox=|510|0;AS_VarDP=26|14|0;BaseQRankSum=0.491;DP=47;MQRankSum=-1.310;QUALapprox=510;RAW_GT_COUNT=0,1,0;RAW_MQandDP=167081,47;ReadPosRankSum=-1.154;VarDP=40 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,14,0:40:99:0|1:1046850_A_G:510,0,1029,588,1071,1659:1046850:14,12,7,7 +chrX 1046873 . A . . END=1046912 GT:DP:GQ:MIN_DP:PL 0/0:38:91:38:0,91,1127 +chrX 1046913 . AGAAG A, 287.60 . AS_QUALapprox=|295|0;AS_VarDP=24|9|0;BaseQRankSum=0.466;DP=46;MQRankSum=-2.296;QUALapprox=295;RAW_GT_COUNT=0,1,0;RAW_MQandDP=161442,46;ReadPosRankSum=0.734;VarDP=33 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,9,0:33:99:0|1:1046913_AGAAG_A:295,0,968,368,995,1362:1046913:16,8,8,1 +chrX 1046918 . G . . END=1046918 GT:DP:GQ:MIN_DP:PL 0/0:36:79:36:0,79,1103 +chrX 1046919 . A . . END=1046921 GT:DP:GQ:MIN_DP:PL 0/0:37:7:37:0,7,1007 +chrX 1046922 . GAAAGAA G, 396.03 . AS_QUALapprox=|435|0;AS_VarDP=23|12|0;BaseQRankSum=-0.590;DP=42;MQRankSum=-2.092;QUALapprox=435;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147042,42;ReadPosRankSum=0.825;VarDP=35 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,12,0:35:99:0|1:1046913_AGAAG_A:435,0,929,448,912,1374:1046913:13,7,8,1 +chrX 1046929 . A . . END=1046931 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,888 +chrX 1046932 . A G, 387.04 . AS_QUALapprox=|435|0;AS_VarDP=23|12|0;BaseQRankSum=0.646;DP=43;MQRankSum=-2.092;QUALapprox=435;RAW_GT_COUNT=0,1,0;RAW_MQandDP=150642,43;ReadPosRankSum=0.613;VarDP=35 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,12,0:35:99:0|1:1046913_AGAAG_A:435,0,929,448,912,1374:1046913:13,7,8,1 +chrX 1046933 . A . . END=1046981 GT:DP:GQ:MIN_DP:PL 0/0:36:75:36:0,75,1068 +chrX 1046982 . G A, 370.64 . AS_QUALapprox=|378|0;AS_VarDP=20|15|0;BaseQRankSum=0.164;DP=43;MQRankSum=-3.020;QUALapprox=378;RAW_GT_COUNT=0,1,0;RAW_MQandDP=146793,43;ReadPosRankSum=0.650;VarDP=35 GT:AD:DP:GQ:PL:SB 0/1:20,15,0:35:99:378,0,546,438,590,1028:18,2,13,2 +chrX 1046983 . G . . END=1047046 GT:DP:GQ:MIN_DP:PL 0/0:36:20:35:0,20,896 +chrX 1047047 . G . . END=1047048 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,540 +chrX 1047049 . A . . END=1047055 GT:DP:GQ:MIN_DP:PL 0/0:34:27:33:0,27,405 +chrX 1047056 . G . . END=1047056 GT:DP:GQ:MIN_DP:PL 0/0:28:14:28:0,14,723 +chrX 1047057 . A . . END=1047072 GT:DP:GQ:MIN_DP:PL 0/0:20:30:18:0,30,432 +chrX 1047073 . GAAGGAAGGAAGAAAGAAAGA G, 390.01 . AS_QUALapprox=|404|0;AS_VarDP=0|9|0;DP=21;QUALapprox=404;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75600,21;VarDP=9 GT:AD:DP:GQ:PL:SB 1/1:0,9,0:9:28:404,28,0,404,28,404:0,0,8,1 +chrX 1047094 . A . . END=1047095 GT:DP:GQ:MIN_DP:PL 0/0:28:42:28:0,42,630 +chrX 1047096 . G . . END=1047096 GT:DP:GQ:MIN_DP:PL 0/0:25:15:25:0,15,628 +chrX 1047097 . A . . END=1047100 GT:DP:GQ:MIN_DP:PL 0/0:28:22:27:0,22,720 +chrX 1047101 . A . . END=1047101 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,735 +chrX 1047102 . A . . END=1047104 GT:DP:GQ:MIN_DP:PL 0/0:29:45:29:0,45,686 +chrX 1047105 . A . . END=1047105 GT:DP:GQ:MIN_DP:PL 0/0:29:0:29:0,0,651 +chrX 1047106 . A . . END=1047108 GT:DP:GQ:MIN_DP:PL 0/0:29:54:29:0,54,810 +chrX 1047109 . A . . END=1047109 GT:DP:GQ:MIN_DP:PL 0/0:29:0:29:0,0,620 +chrX 1047110 . A . . END=1047112 GT:DP:GQ:MIN_DP:PL 0/0:31:60:31:0,60,900 +chrX 1047113 . A . . END=1047113 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,701 +chrX 1047114 . A . . END=1047116 GT:DP:GQ:MIN_DP:PL 0/0:30:63:30:0,63,945 +chrX 1047117 . A . . END=1047117 GT:DP:GQ:MIN_DP:PL 0/0:27:0:27:0,0,622 +chrX 1047118 . A . . END=1047119 GT:DP:GQ:MIN_DP:PL 0/0:28:66:28:0,66,990 +chrX 1047120 . G . . END=1047121 GT:DP:GQ:MIN_DP:PL 0/0:26:0:26:0,0,602 +chrX 1047122 . A . . END=1047124 GT:DP:GQ:MIN_DP:PL 0/0:30:68:30:0,68,917 +chrX 1047125 . A . . END=1047126 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,814 +chrX 1047127 . A . . END=1047127 GT:DP:GQ:MIN_DP:PL 0/0:32:84:32:0,84,1260 +chrX 1047128 . G . . END=1047128 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,723 +chrX 1047129 . A . . END=1047315 GT:DP:GQ:MIN_DP:PL 0/0:34:33:34:0,33,862 +chrX 1047316 . T C, 664.64 . AS_QUALapprox=|672|0;AS_VarDP=24|25|0;BaseQRankSum=-0.608;DP=54;MQRankSum=0.000;QUALapprox=672;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=0.050;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:24,25,0:49:99:672,0,661,744,736,1480:11,13,18,7 +chrX 1047317 . G . . END=1047557 GT:DP:GQ:MIN_DP:PL 0/0:54:93:54:0,93,1351 +chrX 1047558 . T A, 872.64 . AS_QUALapprox=|880|0;AS_VarDP=19|33|0;BaseQRankSum=-0.920;DP=56;MQRankSum=0.000;QUALapprox=880;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=0.399;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:19,33,0:52:99:880,0,464,937,563,1501:7,12,13,20 +chrX 1047559 . A . . END=1047677 GT:DP:GQ:MIN_DP:PL 0/0:52:42:52:0,42,1242 +chrX 1047678 . T . . END=1047678 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,1221 +chrX 1047679 . T . . END=1047679 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,120,1800 +chrX 1047680 . G . . END=1047681 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,973 +chrX 1047682 . C . . END=1047687 GT:DP:GQ:MIN_DP:PL 0/0:44:21:43:0,21,1207 +chrX 1047688 . T . . END=1047692 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,724 +chrX 1047693 . T . . END=1047693 GT:DP:GQ:MIN_DP:PL 0/0:44:96:44:0,96,1440 +chrX 1047694 . A . . END=1047694 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,579 +chrX 1047695 . T . . END=1047695 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,99,1485 +chrX 1047696 . T TTCTCTC, 463 . AS_QUALapprox=|477|0;AS_VarDP=1|16|0;BaseQRankSum=-0.253;DP=38;MQRankSum=-0.307;QUALapprox=477;RAW_GT_COUNT=0,0,1;RAW_MQandDP=132326,38;ReadPosRankSum=-0.952;VarDP=17 GT:AD:DP:GQ:PL:SB 1/1:1,16,0:17:24:477,24,0,481,47,504:1,0,10,6 +chrX 1047697 . T . . END=1047745 GT:DP:GQ:MIN_DP:PL 0/0:35:42:35:0,42,630 +chrX 1047746 . G . . END=1047746 GT:DP:GQ:MIN_DP:PL 0/0:26:10:26:0,10,596 +chrX 1047747 . T . . END=1047749 GT:DP:GQ:MIN_DP:PL 0/0:34:69:34:0,69,1035 +chrX 1047750 . T . . END=1047750 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,795 +chrX 1047751 . T . . END=1047753 GT:DP:GQ:MIN_DP:PL 0/0:43:24:39:0,24,1009 +chrX 1047754 . C . . END=1047757 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,614 +chrX 1047758 . T . . END=1047871 GT:DP:GQ:MIN_DP:PL 0/0:36:24:35:0,24,974 +chrX 1047872 . GA G, 605.60 . AS_QUALapprox=|613|0;AS_VarDP=26|27|0;BaseQRankSum=1.487;DP=59;MQRankSum=0.000;QUALapprox=613;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=1.704;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:26,27,0:53:99:613,0,572,691,653,1344:17,9,14,13 +chrX 1047874 . A . . END=1048299 GT:DP:GQ:MIN_DP:PL 0/0:53:98:53:0,98,1295 +chrX 1048300 . A T, 764.64 . AS_QUALapprox=|772|0;AS_VarDP=18|29|0;BaseQRankSum=-1.842;DP=52;MQRankSum=0.000;QUALapprox=772;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=-0.460;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:18,29,0:47:99:772,0,475,826,561,1387:7,11,19,10 +chrX 1048301 . C . . END=1048389 GT:DP:GQ:MIN_DP:PL 0/0:46:98:46:0,98,1266 +chrX 1048390 . C G, 641.64 . AS_QUALapprox=|649|0;AS_VarDP=13|24|0;BaseQRankSum=-0.064;DP=42;MQRankSum=0.000;QUALapprox=649;RAW_GT_COUNT=0,1,0;RAW_MQandDP=148329,42;ReadPosRankSum=1.035;VarDP=37 GT:AD:DP:GQ:PL:SB 0/1:13,24,0:37:99:649,0,296,687,368,1055:5,8,12,12 +chrX 1048391 . C . . END=1048418 GT:DP:GQ:MIN_DP:PL 0/0:45:46:45:0,46,1122 +chrX 1048419 . T . . END=1048419 GT:DP:GQ:MIN_DP:PL 0/0:45:8:45:0,8,1128 +chrX 1048420 . C . . END=1048442 GT:DP:GQ:MIN_DP:PL 0/0:42:21:41:0,21,1072 +chrX 1048443 . G . . END=1048443 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,953 +chrX 1048444 . A . . END=1048502 GT:DP:GQ:MIN_DP:PL 0/0:27:27:21:0,27,405 +chrX 1048503 . AAAGAAAGAAAGAAAGAAAGAAAGG A, 265.60 . AS_QUALapprox=|273|0;AS_VarDP=3|7|0;BaseQRankSum=-1.054;DP=28;MQRankSum=1.834;QUALapprox=273;RAW_GT_COUNT=0,1,0;RAW_MQandDP=80750,28;ReadPosRankSum=1.687;VarDP=10 GT:AD:DP:GQ:PL:SB 0/1:3,7,0:10:54:273,0,54,281,75,356:3,0,6,1 +chrX 1048528 . A . . END=1048530 GT:DP:GQ:MIN_DP:PL 0/0:18:36:18:0,36,540 +chrX 1048531 . G . . END=1048531 GT:DP:GQ:MIN_DP:PL 0/0:17:0:17:0,0,252 +chrX 1048532 . A . . END=1048534 GT:DP:GQ:MIN_DP:PL 0/0:19:22:19:0,22,479 +chrX 1048535 . G . . END=1048535 GT:DP:GQ:MIN_DP:PL 0/0:18:0:18:0,0,287 +chrX 1048536 . A . . END=1048537 GT:DP:GQ:MIN_DP:PL 0/0:19:22:19:0,22,541 +chrX 1048538 . G . . END=1048547 GT:DP:GQ:MIN_DP:PL 0/0:17:0:17:0,0,273 +chrX 1048548 . A . . END=1048548 GT:DP:GQ:MIN_DP:PL 0/0:17:45:17:0,45,675 +chrX 1048549 . A . . END=1048559 GT:DP:GQ:MIN_DP:PL 0/0:19:0:19:0,0,342 +chrX 1048560 . A . . END=1048560 GT:DP:GQ:MIN_DP:PL 0/0:22:54:22:0,54,810 +chrX 1048561 . A . . END=1048563 GT:DP:GQ:MIN_DP:PL 0/0:22:0:22:0,0,416 +chrX 1048564 . A . . END=1048564 GT:DP:GQ:MIN_DP:PL 0/0:22:31:22:0,31,655 +chrX 1048565 . A . . END=1048567 GT:DP:GQ:MIN_DP:PL 0/0:22:0:22:0,0,416 +chrX 1048568 . A . . END=1048568 GT:DP:GQ:MIN_DP:PL 0/0:23:20:23:0,20,600 +chrX 1048569 . A . . END=1048572 GT:DP:GQ:MIN_DP:PL 0/0:22:0:22:0,0,451 +chrX 1048573 . G . . END=1048574 GT:DP:GQ:MIN_DP:PL 0/0:21:25:20:0,25,503 +chrX 1048575 . A . . END=1048575 GT:DP:GQ:MIN_DP:PL 0/0:22:0:22:0,0,434 +chrX 1048576 . G . . END=1048576 GT:DP:GQ:MIN_DP:PL 0/0:20:60:20:0,60,594 +chrX 1048577 . G . . END=1048721 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,0 +chrX 1048722 . A . . END=1048809 GT:DP:GQ:MIN_DP:PL 0/0:22:24:11:0,24,360 +chrX 1048810 . A . . END=1048810 GT:DP:GQ:MIN_DP:PL 0/0:23:0:23:0,0,352 +chrX 1048811 . C . . END=1048837 GT:DP:GQ:MIN_DP:PL 0/0:28:66:28:0,66,948 +chrX 1048838 . C A, 594.64 . AS_QUALapprox=|602|0;AS_VarDP=11|20|0;BaseQRankSum=2.878;DP=38;MQRankSum=0.000;QUALapprox=602;RAW_GT_COUNT=0,1,0;RAW_MQandDP=135049,38;ReadPosRankSum=-0.764;VarDP=31 GT:AD:DP:GQ:PL:SB 0/1:11,20,0:31:99:602,0,249,635,309,944:8,3,9,11 +chrX 1048839 . C . . END=1048966 GT:DP:GQ:MIN_DP:PL 0/0:54:86:54:0,86,1426 +chrX 1048967 . T C, 690.64 . AS_QUALapprox=|698|0;AS_VarDP=30|19|0;BaseQRankSum=1.665;DP=53;MQRankSum=0.000;QUALapprox=698;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=0.790;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:30,19,0:49:99:0|1:1048967_T_C:698,0,1203,788,1260,2048:1048967:14,16,4,15 +chrX 1048968 . C T, 690.64 . AS_QUALapprox=|698|0;AS_VarDP=30|19|0;BaseQRankSum=1.665;DP=52;MQRankSum=0.000;QUALapprox=698;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=0.770;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:30,19,0:49:99:0|1:1048967_T_C:698,0,1203,788,1260,2048:1048967:14,16,4,15 +chrX 1048969 . T . . END=1049240 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,106,1439 +chrX 1049241 . C T, 769.64 . AS_QUALapprox=|777|0;AS_VarDP=20|27|0;BaseQRankSum=0.846;DP=47;MQRankSum=0.000;QUALapprox=777;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=-1.184;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:20,27,0:47:99:777,0,524,837,605,1442:6,14,12,15 +chrX 1049242 . A . . END=1049384 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,118,1613 +chrX 1049385 . A C, 702.64 . AS_QUALapprox=|710|0;AS_VarDP=24|26|0;BaseQRankSum=1.235;DP=52;MQRankSum=0.000;QUALapprox=710;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=-0.690;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:24,26,0:50:99:710,0,594,781,672,1453:12,12,12,14 +chrX 1049386 . T . . END=1049607 GT:DP:GQ:MIN_DP:PL 0/0:17:21:13:0,21,237 +chrX 1049608 . G . . END=1049608 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,219 +chrX 1049609 . C . . END=1049619 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,233 +chrX 1049620 . G . . END=1049621 GT:DP:GQ:MIN_DP:PL 0/0:7:0:7:0,0,184 +chrX 1049622 . T . . END=1049680 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,233 +chrX 1049681 . G . . END=1049681 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,188 +chrX 1049682 . A . . END=1049703 GT:DP:GQ:MIN_DP:PL 0/0:10:21:8:0,21,233 +chrX 1049704 . C . . END=1049704 GT:DP:GQ:MIN_DP:PL 0/0:9:13:9:0,13,264 +chrX 1049705 . T . . END=1049711 GT:DP:GQ:MIN_DP:PL 0/0:10:27:9:0,27,303 +chrX 1049712 . G . . END=1049712 GT:DP:GQ:MIN_DP:PL 0/0:10:16:10:0,16,279 +chrX 1049713 . G . . END=1049737 GT:DP:GQ:MIN_DP:PL 0/0:12:22:9:0,22,293 +chrX 1049738 . C . . END=1049738 GT:DP:GQ:MIN_DP:PL 0/0:14:17:14:0,17,387 +chrX 1049739 . T . . END=1049806 GT:DP:GQ:MIN_DP:PL 0/0:13:25:12:0,25,312 +chrX 1049807 . A . . END=1049809 GT:DP:GQ:MIN_DP:PL 0/0:11:8:11:0,8,262 +chrX 1049810 . C . . END=1049823 GT:DP:GQ:MIN_DP:PL 0/0:12:30:12:0,30,277 +chrX 1049824 . A . . END=1049824 GT:DP:GQ:MIN_DP:PL 0/0:12:11:12:0,11,297 +chrX 1049825 . T . . END=1049913 GT:DP:GQ:MIN_DP:PL 0/0:14:24:9:0,24,287 +chrX 1049914 . G . . END=1049946 GT:DP:GQ:MIN_DP:PL 0/0:6:0:6:0,0,174 +chrX 1049947 . C . . END=1049957 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,243 +chrX 1049958 . T . . END=1049977 GT:DP:GQ:MIN_DP:PL 0/0:7:18:7:0,18,270 +chrX 1049978 . G . . END=1050071 GT:DP:GQ:MIN_DP:PL 0/0:11:20:9:0,20,243 +chrX 1050072 . A . . END=1050072 GT:DP:GQ:MIN_DP:PL 0/0:18:15:18:0,15,507 +chrX 1050073 . C . . END=1050120 GT:DP:GQ:MIN_DP:PL 0/0:24:22:20:0,22,540 +chrX 1050121 . G . . END=1050121 GT:DP:GQ:MIN_DP:PL 0/0:24:3:24:0,3,635 +chrX 1050122 . C . . END=1050442 GT:DP:GQ:MIN_DP:PL 0/0:30:27:25:0,27,745 +chrX 1050443 . GGAGGTTGCAGTGAGCT G, 1018.60 . AS_QUALapprox=|1026|0;AS_VarDP=22|26|0;BaseQRankSum=0.156;DP=52;MQRankSum=1.129;QUALapprox=1026;RAW_GT_COUNT=0,1,0;RAW_MQandDP=184825,52;ReadPosRankSum=-0.610;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:22,26,0:48:99:1026,0,822,1092,901,1993:12,10,14,12 +chrX 1050460 . G . . END=1050509 GT:DP:GQ:MIN_DP:PL 0/0:40:73:40:0,73,1071 +chrX 1050510 . C CA, 348.60 . AS_QUALapprox=|356|0;AS_VarDP=14|17|0;BaseQRankSum=0.311;DP=39;MQRankSum=0.000;QUALapprox=356;RAW_GT_COUNT=0,1,0;RAW_MQandDP=140400,39;ReadPosRankSum=0.079;VarDP=31 GT:AD:DP:GQ:PL:SB 0/1:14,17,0:31:99:356,0,277,398,328,726:9,5,11,6 +chrX 1050511 . A . . END=1050522 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1050523 . G . . END=1050523 GT:DP:GQ:MIN_DP:PL 0/0:57:0:57:0,0,1453 +chrX 1050524 . G . . END=1050899 GT:DP:GQ:MIN_DP:PL 0/0:54:90:54:0,90,1449 +chrX 1050900 . G GT, 1004.03 . AS_QUALapprox=|1018|0;AS_VarDP=0|40|0;DP=53;QUALapprox=1018;RAW_GT_COUNT=0,0,1;RAW_MQandDP=189504,53;VarDP=40 GT:AD:DP:GQ:PL:SB 1/1:0,40,0:40:99:1018,120,0,1018,120,1018:0,0,15,25 +chrX 1050901 . T . . END=1051046 GT:DP:GQ:MIN_DP:PL 0/0:48:85:48:0,85,1380 +chrX 1051047 . C A, 515.64 . AS_QUALapprox=|523|0;AS_VarDP=22|20|0;BaseQRankSum=0.214;DP=43;MQRankSum=0.000;QUALapprox=523;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154800,43;ReadPosRankSum=1.109;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:22,20,0:42:99:523,0,599,589,659,1248:12,10,11,9 +chrX 1051048 . C . . END=1051323 GT:DP:GQ:MIN_DP:PL 0/0:64:90:64:0,90,1316 +chrX 1051324 . G A, 794.64 . AS_QUALapprox=|802|0;AS_VarDP=29|31|0;BaseQRankSum=-0.514;DP=62;MQRankSum=0.000;QUALapprox=802;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=1.295;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:29,31,0:60:99:802,0,767,890,860,1749:16,13,15,16 +chrX 1051325 . T . . END=1051664 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,114,1800 +chrX 1051665 . A AAAG, 1272.60 . AS_QUALapprox=|1280|0;AS_VarDP=23|33|0;BaseQRankSum=-1.027;DP=63;MQRankSum=0.000;QUALapprox=1280;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=1.008;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:23,33,0:56:99:1280,0,844,1350,942,2292:8,15,15,18 +chrX 1051666 . A . . END=1052523 GT:DP:GQ:MIN_DP:PL 0/0:50:38:42:0,38,1173 +chrX 1052524 . A . . END=1052560 GT:DP:GQ:MIN_DP:PL 0/0:62:0:62:0,0,1225 +chrX 1052561 . C T, 678.64 . AS_QUALapprox=|686|0;AS_VarDP=24|27|0;BaseQRankSum=-0.357;DP=64;MQRankSum=-3.252;QUALapprox=686;RAW_GT_COUNT=0,1,0;RAW_MQandDP=210133,64;ReadPosRankSum=0.396;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:24,27,0:51:99:686,0,602,829,747,1927:12,12,18,9 +chrX 1052562 . C . . END=1052589 GT:DP:GQ:MIN_DP:PL 0/0:66:0:66:0,0,1186 +chrX 1052590 . C . . END=1052616 GT:DP:GQ:MIN_DP:PL 0/0:73:99:73:0,109,1794 +chrX 1052617 . C CAAAGGCTGCAATGTGAATGAATTTTTGGAAATAGCCCTAATGCTCATCTATGAAGGAGTGATAAACACAGCATCCTTTATCCATGCAATGGAATATTATGCAGTCTAGAAAAGGAATAAGGCTCTGACAAAAGACTGCAATATGTATGAATTTTGGAAACAGCCCTACTGCCCATCTATAAAGGAATGGATAAACACAGCATAGTTCATCTATACAATGCAATATTATAATGGAATATTATGCAGCCTGGAACAGGAACAAGGCTCTGAG, 1173.60 . AS_QUALapprox=|1181|0;AS_VarDP=48|45|0;BaseQRankSum=-0.435;DP=93;MQRankSum=0.816;QUALapprox=1181;RAW_GT_COUNT=0,1,0;RAW_MQandDP=317503,93;ReadPosRankSum=-4.294;VarDP=93 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:48,45,0:93:99:0|1:1052617_C_CAAAGGCTGCAATGTGAATGAATTTTTGGAAATAGCCCTAATGCTCATCTATGAAGGAGTGATAAACACAGCATCCTTTATCCATGCAATGGAATATTATGCAGTCTAGAAAAGGAATAAGGCTCTGACAAAAGACTGCAATATGTATGAATTTTGGAAACAGCCCTACTGCCCATCTATAAAGGAATGGATAAACACAGCATAGTTCATCTATACAATGCAATATTATAATGGAATATTATGCAGCCTGGAACAGGAACAAGGCTCTGAG:1181,0,676,1282,804,2086:1052617:21,27,20,25 +chrX 1052618 . A . . END=1052674 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 1052675 . G T, 602.64 . AS_QUALapprox=|610|0;AS_VarDP=37|25|0;BaseQRankSum=-0.938;DP=62;MQRankSum=-2.477;QUALapprox=610;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219446,62;ReadPosRankSum=0.795;VarDP=62 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:37,25,0:62:99:0|1:1052617_C_CAAAGGCTGCAATGTGAATGAATTTTTGGAAATAGCCCTAATGCTCATCTATGAAGGAGTGATAAACACAGCATCCTTTATCCATGCAATGGAATATTATGCAGTCTAGAAAAGGAATAAGGCTCTGACAAAAGACTGCAATATGTATGAATTTTGGAAACAGCCCTACTGCCCATCTATAAAGGAATGGATAAACACAGCATAGTTCATCTATACAATGCAATATTATAATGGAATATTATGCAGCCTGGAACAGGAACAAGGCTCTGAG:610,0,1111,719,1182,1901:1052617:12,25,14,11 +chrX 1052676 . T . . END=1052756 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 1052757 . C A, 367.64 . AS_QUALapprox=|375|0;AS_VarDP=23|36|0;BaseQRankSum=-2.874;DP=61;MQRankSum=0.000;QUALapprox=375;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-1.733;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:23,36,0:59:99:375,0,636,444,710,1155:8,15,18,18 +chrX 1052758 . T . . END=1052779 GT:DP:GQ:MIN_DP:PL 0/0:77:99:77:0,120,1800 +chrX 1052780 . T . . END=1052780 GT:DP:GQ:MIN_DP:PL 0/0:67:0:67:0,0,1117 +chrX 1052781 . C . . END=1052839 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1052840 . C T, 159.64 . AS_QUALapprox=|167|0;AS_VarDP=43|8|0;BaseQRankSum=0.023;DP=52;MQRankSum=0.000;QUALapprox=167;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=0.397;VarDP=51 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:43,8,0:51:99:0|1:1052840_C_T:167,0,1743,296,1767,2063:1052840:25,18,3,5 +chrX 1052841 . A . . END=1052844 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 1052845 . C T, 153.64 . AS_QUALapprox=|161|0;AS_VarDP=45|8|0;BaseQRankSum=-0.145;DP=54;MQRankSum=0.000;QUALapprox=161;RAW_GT_COUNT=0,1,0;RAW_MQandDP=191824,54;ReadPosRankSum=0.550;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:45,8,0:53:99:0|1:1052840_C_T:161,0,1827,296,1851,2147:1052840:26,19,3,5 +chrX 1052846 . A . . END=1052858 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 1052859 . A G, 28.64 . AS_QUALapprox=|36|0;AS_VarDP=48|5|0;BaseQRankSum=1.040;DP=54;MQRankSum=0.387;QUALapprox=36;RAW_GT_COUNT=0,1,0;RAW_MQandDP=189593,54;ReadPosRankSum=0.178;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:48,5,0:53:36:0|1:1052840_C_T:36,0,1881,180,1896,2076:1052840:30,18,3,2 +chrX 1052860 . C . . END=1052886 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 1052887 . C G, 19.64 . AS_QUALapprox=|27|0;AS_VarDP=47|4|0;BaseQRankSum=0.916;DP=53;MQRankSum=0.365;QUALapprox=27;RAW_GT_COUNT=0,1,0;RAW_MQandDP=185993,53;ReadPosRankSum=-1.788;VarDP=51 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:47,4,0:51:27:0|1:1052840_C_T:27,0,1778,168,1790,1958:1052840:30,17,2,2 +chrX 1052888 . A . . END=1053421 GT:DP:GQ:MIN_DP:PL 0/0:66:64:66:0,64,1182 +chrX 1053422 . A . . END=1053422 GT:DP:GQ:MIN_DP:PL 0/0:66:0:66:0,0,1599 +chrX 1053423 . G . . END=1053705 GT:DP:GQ:MIN_DP:PL 0/0:56:95:56:0,95,1427 +chrX 1053706 . C T, 522.64 . AS_QUALapprox=|530|0;AS_VarDP=37|22|0;BaseQRankSum=1.662;DP=60;MQRankSum=0.000;QUALapprox=530;RAW_GT_COUNT=0,1,0;RAW_MQandDP=214609,60;ReadPosRankSum=-1.168;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:37,22,0:59:99:530,0,865,638,931,1569:17,20,12,10 +chrX 1053707 . G . . END=1054167 GT:DP:GQ:MIN_DP:PL 0/0:49:73:49:0,73,1157 +chrX 1054168 . T G, 793.64 . AS_QUALapprox=|801|0;AS_VarDP=32|29|0;BaseQRankSum=2.912;DP=63;MQRankSum=0.000;QUALapprox=801;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=-0.246;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:32,29,0:61:99:801,0,790,896,876,1772:17,15,17,12 +chrX 1054169 . G . . END=1054719 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 1054720 . T A, 866.64 . AS_QUALapprox=|874|0;AS_VarDP=30|33|0;BaseQRankSum=-0.699;DP=65;MQRankSum=0.000;QUALapprox=874;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=-0.503;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:30,33,0:63:99:874,0,784,963,883,1846:12,18,13,20 +chrX 1054721 . T . . END=1054828 GT:DP:GQ:MIN_DP:PL 0/0:65:64:65:0,64,1620 +chrX 1054829 . G A, 1012.64 . AS_QUALapprox=|1020|0;AS_VarDP=23|36|0;BaseQRankSum=1.537;DP=62;MQRankSum=0.000;QUALapprox=1020;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=0.054;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:23,36,0:59:99:1020,0,533,1088,641,1729:13,10,15,21 +chrX 1054830 . C . . END=1055092 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 1055093 . G A, 543.64 . AS_QUALapprox=|551|0;AS_VarDP=36|23|0;BaseQRankSum=-1.223;DP=60;MQRankSum=0.000;QUALapprox=551;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=-0.303;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:36,23,0:59:99:551,0,1013,660,1082,1742:16,20,9,14 +chrX 1055094 . C . . END=1055163 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1055164 . TTTTA T, 791.60 . AS_QUALapprox=|799|0;AS_VarDP=35|22|0;BaseQRankSum=-1.552;DP=67;MQRankSum=0.000;QUALapprox=799;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=-0.262;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:35,22,0:57:99:799,0,1403,904,1470,2374:17,18,7,15 +chrX 1055169 . T . . END=1056146 GT:DP:GQ:MIN_DP:PL 0/0:61:63:61:0,63,945 +chrX 1056147 . C . . END=1056170 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,0 +chrX 1056171 . CA C, 234.04 . AS_QUALapprox=|687|0;AS_VarDP=15|23|0;BaseQRankSum=1.500;DP=48;MQRankSum=-1.099;QUALapprox=687;RAW_GT_COUNT=0,1,0;RAW_MQandDP=163004,48;ReadPosRankSum=0.059;VarDP=38 GT:AD:DP:GQ:PL:SB 0/1:15,23,0:38:99:687,0,395,564,465,1046:8,6,6,4 +chrX 1056173 . A . . END=1056303 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,0 +chrX 1056304 . C T, 468.04 . AS_QUALapprox=|513|0;AS_VarDP=16|20|0;BaseQRankSum=0.260;DP=57;MQRankSum=0.000;QUALapprox=513;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194611,57;ReadPosRankSum=1.607;VarDP=36 GT:AD:DP:GQ:PL:SB 0/1:16,20,0:36:99:513,0,387,583,482,1231:10,6,9,10 +chrX 1056305 . G . . END=1056313 GT:DP:GQ:MIN_DP:PL 0/0:56:0:56:0,0,246 +chrX 1056314 . C . . END=1056556 GT:DP:GQ:MIN_DP:PL 0/0:44:35:38:0,35,841 +chrX 1056557 . A AT, 418.60 . AS_QUALapprox=|426|0;AS_VarDP=16|21|0;BaseQRankSum=-0.846;DP=42;MQRankSum=0.000;QUALapprox=426;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151200,42;ReadPosRankSum=0.690;VarDP=37 GT:AD:DP:GQ:PL:SB 0/1:16,21,0:37:99:426,0,310,474,373,846:8,8,14,7 +chrX 1056558 . T . . END=1056569 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 1056570 . C . . END=1056570 GT:DP:GQ:MIN_DP:PL 0/0:54:0:54:0,0,1340 +chrX 1056571 . T . . END=1056573 GT:DP:GQ:MIN_DP:PL 0/0:54:61:54:0,61,1603 +chrX 1056574 . G . . END=1056574 GT:DP:GQ:MIN_DP:PL 0/0:50:17:50:0,17,1381 +chrX 1056575 . A . . END=1056699 GT:DP:GQ:MIN_DP:PL 0/0:50:75:50:0,75,1328 +chrX 1056700 . C T, 733.64 . AS_QUALapprox=|741|0;AS_VarDP=26|20|0;BaseQRankSum=1.244;DP=46;MQRankSum=0.336;QUALapprox=741;RAW_GT_COUNT=0,1,0;RAW_MQandDP=160347,46;ReadPosRankSum=-0.066;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,20,0:46:99:0|1:1056700_C_T:741,0,1032,819,1092,1911:1056700:12,14,12,8 +chrX 1056701 . G . . END=1056703 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,120,1800 +chrX 1056704 . T C, 698.64 . AS_QUALapprox=|706|0;AS_VarDP=27|19|0;BaseQRankSum=0.468;DP=49;MQRankSum=0.261;QUALapprox=706;RAW_GT_COUNT=0,1,0;RAW_MQandDP=166614,49;ReadPosRankSum=0.753;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,19,0:46:99:0|1:1056700_C_T:706,0,1056,788,1113,1901:1056700:12,15,12,7 +chrX 1056705 . G . . END=1056801 GT:DP:GQ:MIN_DP:PL 0/0:59:87:59:0,87,1504 +chrX 1056802 . C T, 2160.06 . AS_QUALapprox=|2174|0;AS_VarDP=0|69|0;DP=72;QUALapprox=2174;RAW_GT_COUNT=0,0,1;RAW_MQandDP=247752,72;VarDP=69 GT:AD:DP:GQ:PL:SB 1/1:0,69,0:69:99:2174,207,0,2174,207,2174:0,0,36,33 +chrX 1056803 . G . . END=1057101 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 1057102 . G A, 437.64 . AS_QUALapprox=|445|0;AS_VarDP=46|19|0;BaseQRankSum=1.228;DP=66;MQRankSum=0.000;QUALapprox=445;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=0.166;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:46,19,0:65:99:445,0,1291,583,1349,1932:25,21,10,9 +chrX 1057103 . G . . END=1057294 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 1057295 . C G, 369.64 . AS_QUALapprox=|377|0;AS_VarDP=37|16|0;BaseQRankSum=-0.159;DP=55;MQRankSum=-1.480;QUALapprox=377;RAW_GT_COUNT=0,1,0;RAW_MQandDP=197649,55;ReadPosRankSum=-0.107;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:37,16,0:53:99:377,0,1083,488,1131,1619:13,24,8,8 +chrX 1057296 . G . . END=1057419 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,114,1439 +chrX 1057420 . AACAC A,AACACAC, 446.60 . AS_QUALapprox=|0|454|0;AS_VarDP=15|1|17|0;BaseQRankSum=-1.528;DP=54;MQRankSum=0.000;QUALapprox=454;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=0.646;VarDP=33 GT:AD:DP:GQ:PL:SB 0/2:15,1,17,0:33:99:454,526,1153,0,481,693,546,1121,638,1216:9,6,9,9 +chrX 1057425 . A . . END=1057441 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,99,1485 +chrX 1057442 . C T, 382.64 . AS_QUALapprox=|390|0;AS_VarDP=22|14|0;BaseQRankSum=0.278;DP=47;MQRankSum=0.000;QUALapprox=390;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=0.674;VarDP=36 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,14,0:36:99:0|1:1057442_C_T:390,0,756,456,798,1254:1057442:12,10,9,5 +chrX 1057443 . A . . END=1057443 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,114,1710 +chrX 1057444 . CAT C, 382.60 . AS_QUALapprox=|390|0;AS_VarDP=22|14|0;BaseQRankSum=0.655;DP=46;MQRankSum=0.000;QUALapprox=390;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=0.974;VarDP=36 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,14,0:36:99:0|1:1057442_C_T:390,0,756,456,798,1254:1057442:12,10,9,5 +chrX 1057446 . T *,C,TAC, 714.88 . AS_QUALapprox=|0|739|193|0;AS_VarDP=1|14|21|0|0;BaseQRankSum=2.053;DP=46;MQRankSum=0.000;QUALapprox=1317;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;ReadPosRankSum=-1.486;VarDP=36 GT:AD:DP:GQ:PL:SB 1/2:1,14,21,0,0:36:99:1317,740,712,578,0,775,1124,643,747,1380,1345,771,838,1398,1604:0,1,21,14 +chrX 1057447 . A . . END=1057500 GT:DP:GQ:MIN_DP:PL 0/0:41:78:41:0,78,1126 +chrX 1057501 . G T, 1277.06 . AS_QUALapprox=|1291|0;AS_VarDP=1|40|0;BaseQRankSum=2.512;DP=42;MQRankSum=0.000;QUALapprox=1291;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151200,42;ReadPosRankSum=-1.311;VarDP=41 GT:AD:DP:GQ:PL:SB 1/1:1,40,0:41:99:1291,113,0,1294,120,1301:0,1,22,18 +chrX 1057502 . T . . END=1057503 GT:DP:GQ:MIN_DP:PL 0/0:63:0:63:0,0,833 +chrX 1057504 . T . . END=1057505 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 1057506 . T . . END=1057511 GT:DP:GQ:MIN_DP:PL 0/0:64:0:64:0,0,621 +chrX 1057512 . T . . END=1057513 GT:DP:GQ:MIN_DP:PL 0/0:73:99:73:0,120,1800 +chrX 1057514 . T . . END=1057515 GT:DP:GQ:MIN_DP:PL 0/0:65:0:65:0,0,346 +chrX 1057516 . A . . END=1057516 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1057517 . G . . END=1057519 GT:DP:GQ:MIN_DP:PL 0/0:61:0:61:0,0,273 +chrX 1057520 . A . . END=1057520 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 1057521 . G . . END=1057523 GT:DP:GQ:MIN_DP:PL 0/0:66:0:66:0,0,203 +chrX 1057524 . T . . END=1057525 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,120,1800 +chrX 1057526 . T . . END=1057526 GT:DP:GQ:MIN_DP:PL 0/0:69:0:69:0,0,113 +chrX 1057527 . T . . END=1057529 GT:DP:GQ:MIN_DP:PL 0/0:77:99:77:0,120,1800 +chrX 1057530 . T . . END=1057535 GT:DP:GQ:MIN_DP:PL 0/0:75:0:75:0,0,0 +chrX 1057536 . C . . END=1057536 GT:DP:GQ:MIN_DP:PL 0/0:83:99:83:0,120,1800 +chrX 1057537 . C . . END=1057537 GT:DP:GQ:MIN_DP:PL 0/0:77:0:77:0,0,250 +chrX 1057538 . C . . END=1057539 GT:DP:GQ:MIN_DP:PL 0/0:83:99:83:0,120,1800 +chrX 1057540 . A . . END=1057543 GT:DP:GQ:MIN_DP:PL 0/0:76:0:76:0,0,68 +chrX 1057544 . T . . END=1057544 GT:DP:GQ:MIN_DP:PL 0/0:82:99:82:0,120,1800 +chrX 1057545 . G . . END=1057545 GT:DP:GQ:MIN_DP:PL 0/0:73:0:73:0,0,0 +chrX 1057546 . G . . END=1057546 GT:DP:GQ:MIN_DP:PL 0/0:81:99:81:0,120,1800 +chrX 1057547 . A . . END=1057549 GT:DP:GQ:MIN_DP:PL 0/0:73:0:73:0,0,1 +chrX 1057550 . G . . END=1057550 GT:DP:GQ:MIN_DP:PL 0/0:82:99:82:0,120,1800 +chrX 1057551 . C . . END=1057551 GT:DP:GQ:MIN_DP:PL 0/0:69:0:69:0,0,63 +chrX 1057552 . A . . END=1057552 GT:DP:GQ:MIN_DP:PL 0/0:89:99:89:0,120,1800 +chrX 1057553 . G . . END=1057553 GT:DP:GQ:MIN_DP:PL 0/0:74:0:74:0,0,0 +chrX 1057554 . T . . END=1057554 GT:DP:GQ:MIN_DP:PL 0/0:92:99:92:0,120,1800 +chrX 1057555 . G . . END=1057557 GT:DP:GQ:MIN_DP:PL 0/0:76:0:76:0,0,0 +chrX 1057558 . G . . END=1057558 GT:DP:GQ:MIN_DP:PL 0/0:86:99:86:0,120,1800 +chrX 1057559 . T . . END=1057560 GT:DP:GQ:MIN_DP:PL 0/0:76:0:76:0,0,0 +chrX 1057561 . A . . END=1057561 GT:DP:GQ:MIN_DP:PL 0/0:93:99:93:0,120,1800 +chrX 1057562 . T TCTCAGCTCACTGCAACCTCTGCTTCCCCAATTCAAATGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCAC, 3249.03 . AS_QUALapprox=|3263|0;AS_VarDP=0|78|0;DP=90;QUALapprox=3263;RAW_GT_COUNT=0,0,1;RAW_MQandDP=276221,90;VarDP=78 GT:AD:DP:GQ:PL:SB 1/1:0,78,0:78:99:3263,221,0,3273,234,3286:0,0,46,32 +chrX 1057563 . C . . END=1057629 GT:DP:GQ:MIN_DP:PL 0/0:100:99:100:0,120,1800 +chrX 1057630 . A . . END=1057630 GT:DP:GQ:MIN_DP:PL 0/0:83:0:83:0,0,788 +chrX 1057631 . G . . END=1057636 GT:DP:GQ:MIN_DP:PL 0/0:97:99:97:0,120,1800 +chrX 1057637 . A . . END=1057637 GT:DP:GQ:MIN_DP:PL 0/0:85:0:85:0,0,907 +chrX 1057638 . A . . END=1057645 GT:DP:GQ:MIN_DP:PL 0/0:94:99:94:0,120,1800 +chrX 1057646 . G . . END=1057646 GT:DP:GQ:MIN_DP:PL 0/0:78:0:78:0,0,973 +chrX 1057647 . A . . END=1057647 GT:DP:GQ:MIN_DP:PL 0/0:93:99:93:0,120,1800 +chrX 1057648 . C . . END=1057650 GT:DP:GQ:MIN_DP:PL 0/0:77:0:77:0,0,959 +chrX 1057651 . C . . END=1057653 GT:DP:GQ:MIN_DP:PL 0/0:88:99:88:0,120,1800 +chrX 1057654 . G . . END=1057655 GT:DP:GQ:MIN_DP:PL 0/0:76:0:76:0,0,857 +chrX 1057656 . C . . END=1057656 GT:DP:GQ:MIN_DP:PL 0/0:90:99:90:0,120,1800 +chrX 1057657 . C . . END=1057659 GT:DP:GQ:MIN_DP:PL 0/0:74:0:74:0,0,873 +chrX 1057660 . C . . END=1057661 GT:DP:GQ:MIN_DP:PL 0/0:86:99:86:0,120,1800 +chrX 1057662 . A . . END=1057665 GT:DP:GQ:MIN_DP:PL 0/0:77:0:77:0,0,1015 +chrX 1057666 . T . . END=1057667 GT:DP:GQ:MIN_DP:PL 0/0:84:99:84:0,120,1800 +chrX 1057668 . G . . END=1057673 GT:DP:GQ:MIN_DP:PL 0/0:75:0:75:0,0,1324 +chrX 1057674 . T . . END=1057675 GT:DP:GQ:MIN_DP:PL 0/0:76:99:76:0,120,1800 +chrX 1057676 . A . . END=1057677 GT:DP:GQ:MIN_DP:PL 0/0:73:0:73:0,0,1460 +chrX 1057678 . A . . END=1057679 GT:DP:GQ:MIN_DP:PL 0/0:75:99:75:0,120,1800 +chrX 1057680 . G . . END=1057688 GT:DP:GQ:MIN_DP:PL 0/0:70:0:70:0,0,1380 +chrX 1057689 . T . . END=1057689 GT:DP:GQ:MIN_DP:PL 0/0:73:99:73:0,120,1800 +chrX 1057690 . T . . END=1057691 GT:DP:GQ:MIN_DP:PL 0/0:69:0:69:0,0,1623 +chrX 1057692 . C . . END=1057692 GT:DP:GQ:MIN_DP:PL 0/0:73:99:73:0,120,1800 +chrX 1057693 . G . . END=1057693 GT:DP:GQ:MIN_DP:PL 0/0:70:0:70:0,0,1707 +chrX 1057694 . C . . END=1057694 GT:DP:GQ:MIN_DP:PL 0/0:74:99:74:0,120,1800 +chrX 1057695 . C . . END=1057697 GT:DP:GQ:MIN_DP:PL 0/0:69:0:69:0,0,1811 +chrX 1057698 . G . . END=1058086 GT:DP:GQ:MIN_DP:PL 0/0:67:30:66:0,30,1445 +chrX 1058087 . A G, 2004.06 . AS_QUALapprox=|2018|0;AS_VarDP=0|46|0;DP=50;QUALapprox=2018;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,46,0:46:99:0|1:1058087_A_G:2018,138,0,2018,138,2018:1058087:0,0,26,20 +chrX 1058088 . A G, 2004.06 . AS_QUALapprox=|2018|0;AS_VarDP=0|46|0;DP=49;QUALapprox=2018;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,46,0:46:99:0|1:1058087_A_G:2018,138,0,2018,138,2018:1058087:0,0,26,20 +chrX 1058089 . A . . END=1058135 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 1058136 . C T, 1143.64 . AS_QUALapprox=|1151|0;AS_VarDP=36|30|0;BaseQRankSum=1.349;DP=68;MQRankSum=0.000;QUALapprox=1151;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=1.629;VarDP=66 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:36,30,0:66:99:0|1:1058136_C_T:1151,0,1401,1260,1491,2751:1058136:25,11,15,15 +chrX 1058137 . G A, 1143.64 . AS_QUALapprox=|1151|0;AS_VarDP=36|30|0;BaseQRankSum=0.338;DP=68;MQRankSum=0.000;QUALapprox=1151;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=1.615;VarDP=66 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:36,30,0:66:99:0|1:1058136_C_T:1151,0,1401,1260,1491,2751:1058136:25,11,15,15 +chrX 1058138 . T . . END=1058140 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 1058141 . T C, 1101.64 . AS_QUALapprox=|1109|0;AS_VarDP=36|29|0;BaseQRankSum=-0.289;DP=67;MQRankSum=0.000;QUALapprox=1109;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=1.801;VarDP=65 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:36,29,0:65:99:0|1:1058136_C_T:1109,0,1404,1218,1491,2709:1058136:25,11,14,15 +chrX 1058142 . G . . END=1058254 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 1058255 . C T, 1004.64 . AS_QUALapprox=|1012|0;AS_VarDP=24|36|0;BaseQRankSum=1.274;DP=61;MQRankSum=0.000;QUALapprox=1012;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-1.298;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:24,36,0:60:99:1012,0,554,1083,662,1745:12,12,18,18 +chrX 1058256 . A . . END=1058302 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 1058303 . C G, 684.64 . AS_QUALapprox=|692|0;AS_VarDP=31|26|0;BaseQRankSum=-0.253;DP=58;MQRankSum=0.000;QUALapprox=692;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-0.801;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:31,26,0:57:99:692,0,866,785,944,1729:15,16,14,12 +chrX 1058304 . A . . END=1058748 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,115,1641 +chrX 1058749 . C T, 1000.64 . AS_QUALapprox=|1008|0;AS_VarDP=23|35|0;BaseQRankSum=2.785;DP=60;MQRankSum=0.000;QUALapprox=1008;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=0.008;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:23,35,0:58:99:1008,0,531,1076,635,1712:15,8,18,17 +chrX 1058750 . G . . END=1058969 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1058970 . C T, 931.64 . AS_QUALapprox=|939|0;AS_VarDP=30|36|0;BaseQRankSum=-0.682;DP=66;MQRankSum=0.000;QUALapprox=939;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=0.393;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:30,36,0:66:99:939,0,766,1028,873,1901:16,14,15,21 +chrX 1058971 . T . . END=1059046 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 1059047 . T C, 849.64 . AS_QUALapprox=|857|0;AS_VarDP=33|33|0;BaseQRankSum=-1.526;DP=69;MQRankSum=0.000;QUALapprox=857;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=-1.430;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:33,33,0:66:99:857,0,909,957,1008,1965:14,19,14,19 +chrX 1059048 . C . . END=1059129 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1059130 . AT A, 331.60 . AS_QUALapprox=|339|0;AS_VarDP=27|16|0;BaseQRankSum=0.114;DP=51;MQRankSum=0.000;QUALapprox=339;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=1.584;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:27,16,0:43:99:339,0,689,420,737,1157:15,12,10,6 +chrX 1059132 . T . . END=1059244 GT:DP:GQ:MIN_DP:PL 0/0:45:87:45:0,87,1251 +chrX 1059245 . C G, 536.64 . AS_QUALapprox=|544|0;AS_VarDP=24|20|0;BaseQRankSum=1.057;DP=46;MQRankSum=0.000;QUALapprox=544;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=1.014;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:24,20,0:44:99:544,0,622,615,683,1298:17,7,9,11 +chrX 1059246 . C . . END=1059509 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,118,1582 +chrX 1059510 . C T, 726.64 . AS_QUALapprox=|734|0;AS_VarDP=27|26|0;BaseQRankSum=1.686;DP=55;MQRankSum=0.000;QUALapprox=734;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=0.445;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:27,26,0:53:99:734,0,729,815,807,1622:12,15,13,13 +chrX 1059511 . G . . END=1059714 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,102,1361 +chrX 1059715 . A G, 1026.64 . AS_QUALapprox=|1034|0;AS_VarDP=25|35|0;BaseQRankSum=3.830;DP=62;MQRankSum=0.000;QUALapprox=1034;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=-0.053;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:25,35,0:60:99:1034,0,598,1109,704,1813:10,15,21,14 +chrX 1059716 . G . . END=1059916 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,110,1623 +chrX 1059917 . T G, 948.64 . AS_QUALapprox=|956|0;AS_VarDP=24|34|0;BaseQRankSum=1.392;DP=58;MQRankSum=0.000;QUALapprox=956;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-0.742;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:24,34,0:58:99:956,0,575,1028,677,1705:14,10,19,15 +chrX 1059918 . G . . END=1060069 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 1060070 . C T, 755.64 . AS_QUALapprox=|763|0;AS_VarDP=43|30|0;BaseQRankSum=-0.140;DP=75;MQRankSum=0.000;QUALapprox=763;RAW_GT_COUNT=0,1,0;RAW_MQandDP=270000,75;ReadPosRankSum=-0.292;VarDP=73 GT:AD:DP:GQ:PL:SB 0/1:43,30,0:73:99:763,0,1204,893,1295,2187:17,26,15,15 +chrX 1060071 . G . . END=1060233 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,101,1261 +chrX 1060234 . C T, 624.64 . AS_QUALapprox=|632|0;AS_VarDP=23|23|0;BaseQRankSum=0.075;DP=47;MQRankSum=0.000;QUALapprox=632;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=0.791;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:23,23,0:46:99:632,0,616,700,686,1386:15,8,12,11 +chrX 1060235 . T . . END=1060277 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,118,1633 +chrX 1060278 . T C, 809.64 . AS_QUALapprox=|817|0;AS_VarDP=28|29|0;BaseQRankSum=0.945;DP=58;MQRankSum=0.000;QUALapprox=817;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-0.463;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:28,29,0:57:99:817,0,747,901,834,1735:17,11,15,14 +chrX 1060279 . G . . END=1060378 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1060379 . G A, 1074.64 . AS_QUALapprox=|1082|0;AS_VarDP=35|30|0;BaseQRankSum=1.850;DP=66;MQRankSum=0.000;QUALapprox=1082;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=-1.413;VarDP=65 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:35,30,0:65:99:0|1:1060379_G_A:1082,0,1359,1188,1449,2637:1060379:22,13,18,12 +chrX 1060380 . C . . END=1060395 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 1060396 . C T, 1081.64 . AS_QUALapprox=|1089|0;AS_VarDP=40|31|0;BaseQRankSum=1.446;DP=73;MQRankSum=0.000;QUALapprox=1089;RAW_GT_COUNT=0,1,0;RAW_MQandDP=262800,73;ReadPosRankSum=-0.216;VarDP=71 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:40,31,0:71:99:0|1:1060379_G_A:1089,0,1586,1210,1680,2889:1060379:26,14,19,12 +chrX 1060397 . G . . END=1060419 GT:DP:GQ:MIN_DP:PL 0/0:73:99:73:0,120,1800 +chrX 1060420 . T G, 1524.64 . AS_QUALapprox=|1532|0;AS_VarDP=31|39|0;BaseQRankSum=-0.132;DP=71;MQRankSum=0.000;QUALapprox=1532;RAW_GT_COUNT=0,1,0;RAW_MQandDP=255600,71;ReadPosRankSum=-0.068;VarDP=70 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:31,39,0:70:99:0|1:1060420_T_G:1532,0,1184,1625,1302,2927:1060420:19,12,23,16 +chrX 1060421 . C . . END=1060421 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 1060422 . T C, 1530.64 . AS_QUALapprox=|1538|0;AS_VarDP=29|39|0;BaseQRankSum=-1.170;DP=71;MQRankSum=0.000;QUALapprox=1538;RAW_GT_COUNT=0,1,0;RAW_MQandDP=255600,71;ReadPosRankSum=-0.310;VarDP=68 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,39,0:68:99:0|1:1060420_T_G:1538,0,1100,1625,1218,2843:1060420:17,12,23,16 +chrX 1060423 . G . . END=1060466 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1060467 . G A, 857.64 . AS_QUALapprox=|865|0;AS_VarDP=33|34|0;BaseQRankSum=0.264;DP=69;MQRankSum=0.000;QUALapprox=865;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=0.483;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:33,34,0:67:99:865,0,836,964,938,1902:16,17,20,14 +chrX 1060468 . C . . END=1060572 GT:DP:GQ:MIN_DP:PL 0/0:73:99:73:0,120,1800 +chrX 1060573 . G A, 765.64 . AS_QUALapprox=|773|0;AS_VarDP=43|30|0;BaseQRankSum=1.154;DP=75;MQRankSum=0.000;QUALapprox=773;RAW_GT_COUNT=0,1,0;RAW_MQandDP=270000,75;ReadPosRankSum=0.925;VarDP=73 GT:AD:DP:GQ:PL:SB 0/1:43,30,0:73:99:773,0,1140,902,1230,2132:20,23,16,14 +chrX 1060574 . C . . END=1060623 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 1060624 . A G, 723.64 . AS_QUALapprox=|731|0;AS_VarDP=47|30|0;BaseQRankSum=-1.524;DP=78;MQRankSum=0.000;QUALapprox=731;RAW_GT_COUNT=0,1,0;RAW_MQandDP=280800,78;ReadPosRankSum=-0.805;VarDP=77 GT:AD:DP:GQ:PL:SB 0/1:47,30,0:77:99:731,0,1342,873,1432,2305:26,21,18,12 +chrX 1060625 . A . . END=1060772 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1060773 . A G, 2085.06 . AS_QUALapprox=|2099|0;AS_VarDP=0|65|0;DP=66;QUALapprox=2099;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=65 GT:AD:DP:GQ:PL:SB 1/1:0,65,0:65:99:2099,195,0,2099,195,2099:0,0,27,38 +chrX 1060774 . G . . END=1061124 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 1061125 . T C, 1679.06 . AS_QUALapprox=|1693|0;AS_VarDP=0|51|0;DP=56;QUALapprox=1693;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1693,153,0,1693,153,1693:0,0,29,22 +chrX 1061126 . T . . END=1061236 GT:DP:GQ:MIN_DP:PL 0/0:60:91:60:0,91,1694 +chrX 1061237 . CT C, 1252.03 . AS_QUALapprox=|1266|0;AS_VarDP=0|41|0;DP=52;QUALapprox=1266;RAW_GT_COUNT=0,0,1;RAW_MQandDP=186409,52;VarDP=41 GT:AD:DP:GQ:PL:SB 1/1:0,41,0:41:99:1266,123,0,1266,123,1266:0,0,19,22 +chrX 1061239 . T . . END=1061358 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,99,1497 +chrX 1061359 . T C, 1752.06 . AS_QUALapprox=|1766|0;AS_VarDP=0|55|0;DP=56;QUALapprox=1766;RAW_GT_COUNT=0,0,1;RAW_MQandDP=197364,56;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1766,165,0,1766,165,1766:0,0,26,29 +chrX 1061360 . C . . END=1061590 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,108,1800 +chrX 1061591 . G A, 861.64 . AS_QUALapprox=|869|0;AS_VarDP=19|32|0;BaseQRankSum=-0.859;DP=52;MQRankSum=-0.730;QUALapprox=869;RAW_GT_COUNT=0,1,0;RAW_MQandDP=185121,52;ReadPosRankSum=0.322;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:19,32,0:51:99:869,0,462,926,558,1484:13,6,20,12 +chrX 1061592 . G . . END=1061773 GT:DP:GQ:MIN_DP:PL 0/0:60:50:60:0,50,1450 +chrX 1061774 . A T, 756.64 . AS_QUALapprox=|764|0;AS_VarDP=25|28|0;BaseQRankSum=0.620;DP=54;MQRankSum=-0.907;QUALapprox=764;RAW_GT_COUNT=0,1,0;RAW_MQandDP=192400,54;ReadPosRankSum=-1.346;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:25,28,0:53:99:764,0,635,839,719,1558:12,13,10,18 +chrX 1061775 . C . . END=1062214 GT:DP:GQ:MIN_DP:PL 0/0:57:93:57:0,93,1490 +chrX 1062215 . T C, 1826.06 . AS_QUALapprox=|1840|0;AS_VarDP=1|57|0;BaseQRankSum=2.231;DP=59;MQRankSum=0.000;QUALapprox=1840;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;ReadPosRankSum=-0.508;VarDP=58 GT:AD:DP:GQ:PL:SB 1/1:1,57,0:58:99:1840,164,0,1843,171,1850:0,1,29,28 +chrX 1062216 . G . . END=1062488 GT:DP:GQ:MIN_DP:PL 0/0:50:90:50:0,90,1306 +chrX 1062489 . C CCT, 321.60 . AS_QUALapprox=|329|0;AS_VarDP=21|12|0;BaseQRankSum=1.043;DP=44;MQRankSum=0.000;QUALapprox=329;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=0.730;VarDP=33 GT:AD:DP:GQ:PL:SB 0/1:21,12,0:33:99:329,0,643,393,679,1072:10,11,7,5 +chrX 1062490 . C . . END=1062551 GT:DP:GQ:MIN_DP:PL 0/0:42:82:42:0,82,1141 +chrX 1062552 . C G, 1538.06 . AS_QUALapprox=|1552|0;AS_VarDP=0|51|0;DP=52;QUALapprox=1552;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1552,152,0,1552,152,1552:0,0,24,27 +chrX 1062553 . G . . END=1063155 GT:DP:GQ:MIN_DP:PL 0/0:60:92:60:0,92,1300 +chrX 1063156 . G C, 666.64 . AS_QUALapprox=|674|0;AS_VarDP=22|26|0;BaseQRankSum=-1.144;DP=50;MQRankSum=0.000;QUALapprox=674;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=0.714;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:22,26,0:48:99:674,0,591,741,669,1409:9,13,8,18 +chrX 1063157 . G . . END=1063182 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 1063183 . A G, 1683.06 . AS_QUALapprox=|1697|0;AS_VarDP=0|53|0;DP=54;QUALapprox=1697;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1697,159,0,1697,159,1697:0,0,20,33 +chrX 1063184 . A . . END=1063239 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 1063240 . A G, 1733.06 . AS_QUALapprox=|1747|0;AS_VarDP=0|53|0;DP=56;QUALapprox=1747;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1747,159,0,1747,159,1747:0,0,20,33 +chrX 1063241 . T . . END=1063362 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,114,1358 +chrX 1063363 . C T, 2082.06 . AS_QUALapprox=|2096|0;AS_VarDP=0|49|0;DP=50;QUALapprox=2096;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,49,0:49:99:0|1:1063363_C_T:2096,147,0,2096,147,2096:1063363:0,0,31,18 +chrX 1063364 . G . . END=1063367 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 1063368 . CA C, 2082.03 . AS_QUALapprox=|2096|0;AS_VarDP=0|49|0;DP=49;QUALapprox=2096;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,49,0:49:99:0|1:1063363_C_T:2096,147,0,2096,147,2096:1063363:0,0,31,18 +chrX 1063370 . A . . END=1063445 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,105,1336 +chrX 1063446 . C T, 1972.06 . AS_QUALapprox=|1986|0;AS_VarDP=0|60|0;DP=65;QUALapprox=1986;RAW_GT_COUNT=0,0,1;RAW_MQandDP=231300,65;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:1986,180,0,1986,180,1986:0,0,35,25 +chrX 1063447 . G . . END=1063483 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 1063484 . G C, 2571.06 . AS_QUALapprox=|2585|0;AS_VarDP=1|61|0;BaseQRankSum=1.857;DP=64;MQRankSum=-0.150;QUALapprox=2585;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226332,64;ReadPosRankSum=1.477;VarDP=62 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:1,61,0:62:99:0|1:1063484_G_C:2585,152,0,2588,183,2619:1063484:1,0,33,28 +chrX 1063485 . G . . END=1063495 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1063496 . G A, 2633.06 . AS_QUALapprox=|2647|0;AS_VarDP=1|62|0;BaseQRankSum=1.691;DP=64;MQRankSum=-0.149;QUALapprox=2647;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226332,64;ReadPosRankSum=0.895;VarDP=63 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:1,62,0:63:99:0|1:1063484_G_C:2647,155,0,2650,187,2681:1063484:1,0,33,29 +chrX 1063497 . G . . END=1063795 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 1063796 . G A, 2046.06 . AS_QUALapprox=|2060|0;AS_VarDP=0|63|0;DP=65;QUALapprox=2060;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=63 GT:AD:DP:GQ:PL:SB 1/1:0,63,0:63:99:2060,189,0,2060,189,2060:0,0,36,27 +chrX 1063797 . A . . END=1063930 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 1063931 . G A, 1872.06 . AS_QUALapprox=|1886|0;AS_VarDP=0|58|0;DP=61;QUALapprox=1886;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=58 GT:AD:DP:GQ:PL:SB 1/1:0,58,0:58:99:1886,173,0,1886,173,1886:0,0,30,28 +chrX 1063932 . T . . END=1064329 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,119,1707 +chrX 1064330 . A G, 483.64 . AS_QUALapprox=|491|0;AS_VarDP=32|22|0;BaseQRankSum=-2.129;DP=56;MQRankSum=0.000;QUALapprox=491;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-0.978;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:32,22,0:54:99:491,0,911,587,976,1563:17,15,8,14 +chrX 1064331 . G . . END=1064476 GT:DP:GQ:MIN_DP:PL 0/0:55:96:55:0,96,1369 +chrX 1064477 . G A, 468.64 . AS_QUALapprox=|476|0;AS_VarDP=31|19|0;BaseQRankSum=0.784;DP=51;MQRankSum=0.000;QUALapprox=476;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-0.830;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:31,19,0:50:99:476,0,853,568,909,1478:10,21,5,14 +chrX 1064478 . T . . END=1064603 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 1064604 . C T, 829.64 . AS_QUALapprox=|837|0;AS_VarDP=36|23|0;BaseQRankSum=0.920;DP=59;MQRankSum=0.000;QUALapprox=837;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-1.671;VarDP=59 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:36,23,0:59:99:0|1:1064604_C_T:837,0,1370,945,1439,2385:1064604:20,16,13,10 +chrX 1064605 . T . . END=1064613 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 1064614 . C T, 774.64 . AS_QUALapprox=|782|0;AS_VarDP=33|21|0;BaseQRankSum=0.651;DP=54;MQRankSum=0.000;QUALapprox=782;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=-1.528;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:33,21,0:54:99:0|1:1064604_C_T:782,0,1291,882,1354,2236:1064604:19,14,13,8 +chrX 1064615 . C . . END=1064649 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 1064650 . G C, 1714.06 . AS_QUALapprox=|1728|0;AS_VarDP=0|55|0;DP=56;QUALapprox=1728;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1728,165,0,1728,165,1728:0,0,32,23 +chrX 1064651 . G . . END=1064749 GT:DP:GQ:MIN_DP:PL 0/0:48:97:48:0,97,1369 +chrX 1064750 . C T, 441.64 . AS_QUALapprox=|449|0;AS_VarDP=31|18|0;BaseQRankSum=0.293;DP=49;MQRankSum=-0.887;QUALapprox=449;RAW_GT_COUNT=0,1,0;RAW_MQandDP=161491,49;ReadPosRankSum=1.349;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:31,18,0:49:99:449,0,852,542,907,1448:18,13,11,7 +chrX 1064751 . G . . END=1064782 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 1064783 . A G, 554.64 . AS_QUALapprox=|562|0;AS_VarDP=25|24|0;BaseQRankSum=-1.869;DP=51;MQRankSum=-1.026;QUALapprox=562;RAW_GT_COUNT=0,1,0;RAW_MQandDP=148936,51;ReadPosRankSum=-0.961;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:25,24,0:49:99:562,0,689,638,759,1397:14,11,13,11 +chrX 1064784 . A . . END=1064841 GT:DP:GQ:MIN_DP:PL 0/0:46:79:46:0,79,1245 +chrX 1064842 . C G, 953.64 . AS_QUALapprox=|961|0;AS_VarDP=19|25|0;BaseQRankSum=-2.671;DP=44;MQRankSum=-1.368;QUALapprox=961;RAW_GT_COUNT=0,1,0;RAW_MQandDP=100926,44;ReadPosRankSum=1.233;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:19,25,0:44:99:0|1:1064842_C_G:961,0,691,1018,766,1784:1064842:10,9,14,11 +chrX 1064843 . C . . END=1064857 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,114,1235 +chrX 1064858 . T C, 947.64 . AS_QUALapprox=|955|0;AS_VarDP=21|25|0;BaseQRankSum=-0.196;DP=47;MQRankSum=-1.345;QUALapprox=955;RAW_GT_COUNT=0,1,0;RAW_MQandDP=109835,47;ReadPosRankSum=2.697;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,25,0:46:99:0|1:1064842_C_G:955,0,735,1018,811,1828:1064842:8,13,15,10 +chrX 1064859 . A . . END=1064879 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,107,1335 +chrX 1064880 . T C, 1844.06 . AS_QUALapprox=|1858|0;AS_VarDP=0|53|0;DP=55;QUALapprox=1858;RAW_GT_COUNT=0,0,1;RAW_MQandDP=138963,55;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1858,157,0,1858,157,1858:0,0,25,28 +chrX 1064881 . G . . END=1064908 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 1064909 . T C, 915.64 . AS_QUALapprox=|923|0;AS_VarDP=28|24|0;BaseQRankSum=-0.013;DP=54;MQRankSum=0.306;QUALapprox=923;RAW_GT_COUNT=0,1,0;RAW_MQandDP=161033,54;ReadPosRankSum=1.671;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,24,0:52:99:0|1:1064909_T_C:923,0,1103,1008,1176,2183:1064909:17,11,7,17 +chrX 1064910 . G . . END=1064910 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 1064911 . G T, 721.64 . AS_QUALapprox=|729|0;AS_VarDP=26|28|0;BaseQRankSum=-2.283;DP=55;MQRankSum=-0.498;QUALapprox=729;RAW_GT_COUNT=0,1,0;RAW_MQandDP=166633,55;ReadPosRankSum=-1.836;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:26,28,0:54:99:729,0,1008,807,1092,1899:9,17,17,11 +chrX 1064912 . G . . END=1064919 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 1064920 . T C, 1118.64 . AS_QUALapprox=|1126|0;AS_VarDP=27|29|0;BaseQRankSum=2.343;DP=57;MQRankSum=0.210;QUALapprox=1126;RAW_GT_COUNT=0,1,0;RAW_MQandDP=177833,57;ReadPosRankSum=1.575;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,29,0:56:99:0|1:1064909_T_C:1126,0,1046,1207,1134,2341:1064909:16,11,10,19 +chrX 1064921 . G . . END=1064936 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1064937 . T C, 1181.64 . AS_QUALapprox=|1189|0;AS_VarDP=24|31|0;BaseQRankSum=0.727;DP=57;MQRankSum=-0.820;QUALapprox=1189;RAW_GT_COUNT=0,1,0;RAW_MQandDP=185588,57;ReadPosRankSum=0.671;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,31,0:55:99:0|1:1064909_T_C:1189,0,894,1261,987,2248:1064909:14,10,11,20 +chrX 1064938 . C . . END=1065159 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,102,1713 +chrX 1065160 . G A, 2338.06 . AS_QUALapprox=|2352|0;AS_VarDP=2|56|0;BaseQRankSum=0.989;DP=63;MQRankSum=7.617;QUALapprox=2352;RAW_GT_COUNT=0,0,1;RAW_MQandDP=222009,63;ReadPosRankSum=-1.578;VarDP=58 GT:AD:DP:GQ:PL:SB 1/1:2,56,0:58:99:2352,120,0,2358,169,2407:1,1,32,24 +chrX 1065161 . A C, 2447.06 . AS_QUALapprox=|2461|0;AS_VarDP=0|58|0;DP=62;QUALapprox=2461;RAW_GT_COUNT=0,0,1;RAW_MQandDP=218409,62;VarDP=58 GT:AD:DP:GQ:PL:SB 1/1:0,58,0:58:99:2461,174,0,2461,174,2461:0,0,33,25 +chrX 1065162 . C . . END=1065230 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1065231 . G A, 791.64 . AS_QUALapprox=|799|0;AS_VarDP=20|31|0;BaseQRankSum=0.494;DP=57;MQRankSum=0.019;QUALapprox=799;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198060,57;ReadPosRankSum=-1.140;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:20,31,0:51:99:799,0,737,859,829,1688:10,10,15,16 +chrX 1065232 . C . . END=1065234 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 1065235 . G C, 717.64 . AS_QUALapprox=|725|0;AS_VarDP=38|20|0;BaseQRankSum=0.256;DP=59;MQRankSum=-0.218;QUALapprox=725;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205260,59;ReadPosRankSum=1.328;VarDP=58 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:38,20,0:58:99:0|1:1065235_G_C:725,0,1505,840,1565,2405:1065235:19,19,10,10 +chrX 1065236 . G . . END=1065238 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1065239 . AAT A, 762.60 . AS_QUALapprox=|770|0;AS_VarDP=37|21|0;BaseQRankSum=0.623;DP=59;MQRankSum=0.230;QUALapprox=770;RAW_GT_COUNT=0,1,0;RAW_MQandDP=203869,59;ReadPosRankSum=0.494;VarDP=58 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:37,21,0:58:99:0|1:1065235_G_C:770,0,1480,882,1543,2425:1065235:18,19,11,10 +chrX 1065242 . T . . END=1065249 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 1065250 . T TATA, 803.60 . AS_QUALapprox=|811|0;AS_VarDP=34|22|0;BaseQRankSum=-0.157;DP=58;MQRankSum=0.017;QUALapprox=811;RAW_GT_COUNT=0,1,0;RAW_MQandDP=202269,58;ReadPosRankSum=0.185;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:34,22,0:56:99:0|1:1065235_G_C:811,0,1351,913,1417,2330:1065235:16,18,12,10 +chrX 1065251 . T . . END=1065354 GT:DP:GQ:MIN_DP:PL 0/0:62:60:62:0,60,1721 +chrX 1065355 . A . . END=1065355 GT:DP:GQ:MIN_DP:PL 0/0:68:6:68:0,6,1856 +chrX 1065356 . G . . END=1065419 GT:DP:GQ:MIN_DP:PL 0/0:73:99:73:0,120,1800 +chrX 1065420 . G A, 969.64 . AS_QUALapprox=|977|0;AS_VarDP=26|37|0;BaseQRankSum=-0.923;DP=67;MQRankSum=0.000;QUALapprox=977;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=1.159;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:26,37,0:63:99:977,0,675,1055,785,1841:12,14,16,21 +chrX 1065421 . T . . END=1065490 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 1065491 . A T, 1617.06 . AS_QUALapprox=|1631|0;AS_VarDP=0|50|0;DP=51;QUALapprox=1631;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1631,149,0,1631,149,1631:0,0,21,29 +chrX 1065492 . C . . END=1065537 GT:DP:GQ:MIN_DP:PL 0/0:46:92:46:0,92,1300 +chrX 1065538 . C A, 2071.06 . AS_QUALapprox=|2085|0;AS_VarDP=0|53|0;DP=55;QUALapprox=2085;RAW_GT_COUNT=0,0,1;RAW_MQandDP=196000,55;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:2085,159,0,2085,159,2085:0,0,25,28 +chrX 1065539 . A AAAAAAC, 1069.60 . AS_QUALapprox=|1077|0;AS_VarDP=25|28|0;BaseQRankSum=-1.008;DP=54;MQRankSum=-0.907;QUALapprox=1077;RAW_GT_COUNT=0,1,0;RAW_MQandDP=192400,54;ReadPosRankSum=-0.909;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:25,28,0:53:99:1077,0,955,1153,1039,2192:13,12,12,16 +chrX 1065540 . C . . END=1065743 GT:DP:GQ:MIN_DP:PL 0/0:59:67:59:0,67,1642 +chrX 1065744 . CGTTA C, 2496.03 . AS_QUALapprox=|2510|0;AS_VarDP=0|56|0;DP=59;QUALapprox=2510;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:2510,169,0,2510,169,2510:0,0,25,31 +chrX 1065749 . G . . END=1066673 GT:DP:GQ:MIN_DP:PL 0/0:59:38:59:0,38,1300 +chrX 1066674 . T TA, 1721.03 . AS_QUALapprox=|1735|0;AS_VarDP=0|62|0;DP=73;QUALapprox=1735;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:0,62,0:62:99:1735,186,0,1735,186,1735:0,0,30,32 +chrX 1066675 . A . . END=1067273 GT:DP:GQ:MIN_DP:PL 0/0:79:71:79:0,71,1800 +chrX 1067274 . T . . END=1067315 GT:DP:GQ:MIN_DP:PL 0/0:101:0:101:0,0,1948 +chrX 1067316 . G A, 939.64 . AS_QUALapprox=|947|0;AS_VarDP=58|33|0;BaseQRankSum=0.118;DP=106;MQRankSum=-3.954;QUALapprox=947;RAW_GT_COUNT=0,1,0;RAW_MQandDP=355569,106;ReadPosRankSum=-0.321;VarDP=91 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:58,33,0:91:99:0|1:1067316_G_A:947,0,2139,1141,2265,3588:1067316:31,27,15,17 +chrX 1067317 . G . . END=1067322 GT:DP:GQ:MIN_DP:PL 0/0:97:0:97:0,0,2092 +chrX 1067323 . C T, 838.64 . AS_QUALapprox=|846|0;AS_VarDP=57|28|0;BaseQRankSum=0.910;DP=99;MQRankSum=-3.977;QUALapprox=846;RAW_GT_COUNT=0,1,0;RAW_MQandDP=335684,99;ReadPosRankSum=-0.378;VarDP=85 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:57,28,0:85:99:0|1:1067316_G_A:846,0,2146,1022,2252,3386:1067316:31,26,12,15 +chrX 1067324 . A . . END=1067326 GT:DP:GQ:MIN_DP:PL 0/0:97:0:97:0,0,2063 +chrX 1067327 . T C, 838.64 . AS_QUALapprox=|846|0;AS_VarDP=57|28|0;BaseQRankSum=0.337;DP=100;MQRankSum=-3.977;QUALapprox=846;RAW_GT_COUNT=0,1,0;RAW_MQandDP=339284,100;ReadPosRankSum=-0.409;VarDP=85 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:57,28,0:85:99:0|1:1067316_G_A:846,0,2146,1025,2255,3431:1067316:31,26,12,15 +chrX 1067328 . A . . END=1067371 GT:DP:GQ:MIN_DP:PL 0/0:84:0:84:0,0,1237 +chrX 1067372 . C T, 61.64 . AS_QUALapprox=|69|0;AS_VarDP=51|8|0;BaseQRankSum=1.348;DP=75;MQRankSum=-2.744;QUALapprox=69;RAW_GT_COUNT=0,1,0;RAW_MQandDP=253697,75;ReadPosRankSum=-2.143;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:51,8,0:59:69:69,0,1698,242,1782,2257:30,21,1,7 +chrX 1067373 . T . . END=1067406 GT:DP:GQ:MIN_DP:PL 0/0:62:0:62:0,0,813 +chrX 1067407 . T A, 1497.05 . AS_QUALapprox=|1583|0;AS_VarDP=0|47|0;DP=59;QUALapprox=1583;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201534,59;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1583,142,0,1583,144,1746:0,0,16,27 +chrX 1067408 . T . . END=1067503 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 1067504 . C CT, 363.60 . AS_QUALapprox=|371|0;AS_VarDP=29|21|0;BaseQRankSum=0.875;DP=69;MQRankSum=-1.650;QUALapprox=371;RAW_GT_COUNT=0,1,0;RAW_MQandDP=240483,69;ReadPosRankSum=-0.570;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:29,21,0:50:99:371,0,599,458,661,1119:12,17,14,7 +chrX 1067505 . T . . END=1067631 GT:DP:GQ:MIN_DP:PL 0/0:41:55:41:0,55,1130 +chrX 1067632 . G . . END=1067632 GT:DP:GQ:MIN_DP:PL 0/0:42:7:42:0,7,1091 +chrX 1067633 . A . . END=1067634 GT:DP:GQ:MIN_DP:PL 0/0:44:60:44:0,60,1265 +chrX 1067635 . T . . END=1067636 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,1108 +chrX 1067637 . G . . END=1067643 GT:DP:GQ:MIN_DP:PL 0/0:43:35:42:0,35,1186 +chrX 1067644 . C . . END=1067644 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,1001 +chrX 1067645 . T . . END=1067650 GT:DP:GQ:MIN_DP:PL 0/0:40:44:40:0,44,1071 +chrX 1067651 . C . . END=1067656 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,918 +chrX 1067657 . C . . END=1067659 GT:DP:GQ:MIN_DP:PL 0/0:39:45:39:0,45,1112 +chrX 1067660 . T . . END=1067660 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,1007 +chrX 1067661 . C . . END=1067663 GT:DP:GQ:MIN_DP:PL 0/0:38:42:38:0,42,1057 +chrX 1067664 . G . . END=1067664 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,878 +chrX 1067665 . C . . END=1067667 GT:DP:GQ:MIN_DP:PL 0/0:35:36:35:0,36,1018 +chrX 1067668 . G . . END=1067668 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,864 +chrX 1067669 . G C, 344.64 . AS_QUALapprox=|352|0;AS_VarDP=17|13|0;BaseQRankSum=0.851;DP=51;MQRankSum=0.000;QUALapprox=352;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172062,51;ReadPosRankSum=0.063;VarDP=30 GT:AD:DP:GQ:PL:SB 0/1:17,13,0:30:99:352,0,456,431,532,1102:3,14,1,12 +chrX 1067670 . C . . END=1067672 GT:DP:GQ:MIN_DP:PL 0/0:34:30:34:0,30,958 +chrX 1067673 . A . . END=1067673 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,854 +chrX 1067674 . T . . END=1067677 GT:DP:GQ:MIN_DP:PL 0/0:31:21:31:0,21,884 +chrX 1067678 . T . . END=1067706 GT:DP:GQ:MIN_DP:PL 0/0:21:0:21:0,0,467 +chrX 1067707 . A . . END=1067708 GT:DP:GQ:MIN_DP:PL 0/0:32:84:32:0,84,1260 +chrX 1067709 . G . . END=1067722 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,506 +chrX 1067723 . T . . END=1067723 GT:DP:GQ:MIN_DP:PL 0/0:29:81:29:0,81,1215 +chrX 1067724 . C . . END=1067728 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,496 +chrX 1067729 . T . . END=1067730 GT:DP:GQ:MIN_DP:PL 0/0:32:93:32:0,93,1017 +chrX 1067731 . T . . END=1067734 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,397 +chrX 1067735 . G . . END=1067735 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,1052 +chrX 1067736 . A . . END=1067737 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,362 +chrX 1067738 . C . . END=1067738 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +chrX 1067739 . T . . END=1067741 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,342 +chrX 1067742 . T . . END=1067746 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +chrX 1067747 . C . . END=1067748 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,238 +chrX 1067749 . C . . END=1067751 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +chrX 1067752 . G . . END=1067752 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,289 +chrX 1067753 . C . . END=1067756 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +chrX 1067757 . G . . END=1067757 GT:DP:GQ:MIN_DP:PL 0/0:29:0:29:0,0,203 +chrX 1067758 . G . . END=1067783 GT:DP:GQ:MIN_DP:PL 0/0:36:81:36:0,81,1028 +chrX 1067784 . T C, 233.64 . AS_QUALapprox=|241|0;AS_VarDP=14|7|0;BaseQRankSum=1.348;DP=31;MQRankSum=-3.162;QUALapprox=241;RAW_GT_COUNT=0,1,0;RAW_MQandDP=89587,31;ReadPosRankSum=0.524;VarDP=21 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:14,7,0:21:99:0|1:1067784_T_C:241,0,567,284,588,871:1067784:10,4,0,7 +chrX 1067785 . G . . END=1067786 GT:DP:GQ:MIN_DP:PL 0/0:20:46:20:0,46,616 +chrX 1067787 . GAACCACCAC G, 190.60 . AS_QUALapprox=|198|0;AS_VarDP=18|6|0;BaseQRankSum=1.486;DP=34;MQRankSum=-3.990;QUALapprox=198;RAW_GT_COUNT=0,1,0;RAW_MQandDP=106050,34;ReadPosRankSum=0.496;VarDP=24 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:18,6,0:24:99:0|1:1067784_T_C:198,0,738,252,756,1008:1067784:13,5,0,6 +chrX 1067797 . A . . END=1067797 GT:DP:GQ:MIN_DP:PL 0/0:24:69:24:0,69,1035 +chrX 1067798 . C G, 181.64 . AS_QUALapprox=|189|0;AS_VarDP=21|6|0;BaseQRankSum=1.102;DP=37;MQRankSum=-4.314;QUALapprox=189;RAW_GT_COUNT=0,1,0;RAW_MQandDP=116850,37;ReadPosRankSum=-1.203;VarDP=27 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,6,0:27:99:0|1:1067784_T_C:189,0,864,252,882,1134:1067784:16,5,0,6 +chrX 1067799 . C . . END=1067805 GT:DP:GQ:MIN_DP:PL 0/0:26:66:26:0,66,849 +chrX 1067806 . C A, 178.64 . AS_QUALapprox=|186|0;AS_VarDP=22|6|0;BaseQRankSum=1.151;DP=38;MQRankSum=-4.417;QUALapprox=186;RAW_GT_COUNT=0,1,0;RAW_MQandDP=120450,38;ReadPosRankSum=-2.383;VarDP=28 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,6,0:28:99:0|1:1067784_T_C:186,0,906,252,924,1176:1067784:16,6,0,6 +chrX 1067807 . T . . END=1067808 GT:DP:GQ:MIN_DP:PL 0/0:28:63:28:0,63,945 +chrX 1067809 . T C, 476.64 . AS_QUALapprox=|484|0;AS_VarDP=17|13|0;BaseQRankSum=-0.796;DP=40;MQRankSum=1.592;QUALapprox=484;RAW_GT_COUNT=0,1,0;RAW_MQandDP=127650,40;ReadPosRankSum=2.086;VarDP=30 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:17,13,0:30:99:1|0:1067784_T_C:484,0,663,535,702,1237:1067784:9,8,9,4 +chrX 1067810 . T . . END=1067810 GT:DP:GQ:MIN_DP:PL 0/0:29:66:29:0,66,990 +chrX 1067811 . T C, 172.64 . AS_QUALapprox=|180|0;AS_VarDP=24|6|0;BaseQRankSum=1.100;DP=40;MQRankSum=-4.613;QUALapprox=180;RAW_GT_COUNT=0,1,0;RAW_MQandDP=127650,40;ReadPosRankSum=-2.829;VarDP=30 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,6,0:30:99:0|1:1067784_T_C:180,0,990,252,1008,1260:1067784:18,6,0,6 +chrX 1067812 . A C, 476.64 . AS_QUALapprox=|484|0;AS_VarDP=17|13|0;BaseQRankSum=-0.774;DP=41;MQRankSum=1.592;QUALapprox=484;RAW_GT_COUNT=0,1,0;RAW_MQandDP=131250,41;ReadPosRankSum=1.616;VarDP=30 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:17,13,0:30:99:1|0:1067784_T_C:484,0,663,535,702,1237:1067784:9,8,9,4 +chrX 1067813 . T . . END=1067816 GT:DP:GQ:MIN_DP:PL 0/0:29:69:29:0,69,1035 +chrX 1067817 . G T, 127.64 . AS_QUALapprox=|135|0;AS_VarDP=25|5|0;BaseQRankSum=0.898;DP=42;MQRankSum=-4.560;QUALapprox=135;RAW_GT_COUNT=0,1,0;RAW_MQandDP=136850,42;ReadPosRankSum=-2.693;VarDP=30 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,5,0:30:99:0|1:1067784_T_C:135,0,1035,210,1050,1260:1067784:19,6,0,5 +chrX 1067818 . T . . END=1067818 GT:DP:GQ:MIN_DP:PL 0/0:29:72:29:0,72,1080 +chrX 1067819 . G T, 85.64 . AS_QUALapprox=|93|0;AS_VarDP=25|4|0;BaseQRankSum=0.793;DP=42;MQRankSum=-4.383;QUALapprox=93;RAW_GT_COUNT=0,1,0;RAW_MQandDP=138850,42;ReadPosRankSum=-2.605;VarDP=29 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,4,0:29:93:0|1:1067784_T_C:93,0,1038,168,1050,1218:1067784:19,6,0,4 +chrX 1067820 . T G, 85.64 . AS_QUALapprox=|93|0;AS_VarDP=25|4|0;BaseQRankSum=0.521;DP=42;MQRankSum=-4.383;QUALapprox=93;RAW_GT_COUNT=0,1,0;RAW_MQandDP=138850,42;ReadPosRankSum=-2.073;VarDP=29 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,4,0:29:93:0|1:1067784_T_C:93,0,1038,168,1050,1218:1067784:19,6,0,4 +chrX 1067821 . T . . END=1067904 GT:DP:GQ:MIN_DP:PL 0/0:42:67:42:0,67,1162 +chrX 1067905 . T C, 648.64 . AS_QUALapprox=|656|0;AS_VarDP=16|25|0;BaseQRankSum=-0.561;DP=58;MQRankSum=0.000;QUALapprox=656;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=0.414;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:16,25,0:41:99:656,0,378,704,453,1157:13,3,16,9 +chrX 1067906 . T . . END=1067948 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1167 +chrX 1067949 . CT C, 826.03 . AS_QUALapprox=|840|0;AS_VarDP=0|31|0;DP=55;QUALapprox=840;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=31 GT:AD:DP:GQ:PL:SB 1/1:0,31,0:31:93:840,93,0,840,93,840:0,0,18,13 +chrX 1067951 . T . . END=1068904 GT:DP:GQ:MIN_DP:PL 0/0:57:48:57:0,48,1165 +chrX 1068905 . G A, 583.64 . AS_QUALapprox=|591|0;AS_VarDP=25|22|0;BaseQRankSum=1.245;DP=49;MQRankSum=0.000;QUALapprox=591;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=-1.152;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:25,22,0:47:99:591,0,642,666,708,1374:13,12,10,12 +chrX 1068906 . A . . END=1069897 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,100,1255 +chrX 1069898 . G A, 634.64 . AS_QUALapprox=|642|0;AS_VarDP=16|23|0;BaseQRankSum=0.671;DP=45;MQRankSum=1.251;QUALapprox=642;RAW_GT_COUNT=0,1,0;RAW_MQandDP=161001,45;ReadPosRankSum=-0.171;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:16,23,0:39:99:642,0,383,690,452,1142:10,6,8,15 +chrX 1069899 . C . . END=1070068 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,107,1349 +chrX 1070069 . A G, 821.64 . AS_QUALapprox=|829|0;AS_VarDP=25|31|0;BaseQRankSum=-0.143;DP=57;MQRankSum=0.000;QUALapprox=829;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=0.115;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:25,31,0:56:99:829,0,641,904,734,1638:14,11,12,19 +chrX 1070070 . T . . END=1070331 GT:DP:GQ:MIN_DP:PL 0/0:55:98:55:0,98,1399 +chrX 1070332 . A C, 1594.06 . AS_QUALapprox=|1608|0;AS_VarDP=0|49|0;DP=50;QUALapprox=1608;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1608,147,0,1608,147,1608:0,0,22,27 +chrX 1070333 . A . . END=1070493 GT:DP:GQ:MIN_DP:PL 0/0:40:36:39:0,36,1111 +chrX 1070494 . A . . END=1070494 GT:DP:GQ:MIN_DP:PL 0/0:40:7:40:0,7,1054 +chrX 1070495 . G . . END=1070500 GT:DP:GQ:MIN_DP:PL 0/0:38:20:38:0,20,990 +chrX 1070501 . G GAGGA, 194.60 . AS_QUALapprox=|202|0;AS_VarDP=17|7|0;BaseQRankSum=-2.203;DP=32;MQRankSum=0.993;QUALapprox=202;RAW_GT_COUNT=0,1,0;RAW_MQandDP=113018,32;ReadPosRankSum=-0.286;VarDP=24 GT:AD:DP:GQ:PL:SB 0/1:17,7,0:24:99:202,0,622,253,643,896:15,2,6,1 +chrX 1070502 . A . . END=1070543 GT:DP:GQ:MIN_DP:PL 0/0:28:45:28:0,45,675 +chrX 1070544 . GAGAA G, 1033.03 . AS_QUALapprox=|1047|0;AS_VarDP=0|24|0;DP=33;QUALapprox=1047;RAW_GT_COUNT=0,0,1;RAW_MQandDP=117504,33;VarDP=24 GT:AD:DP:GQ:PL:SB 1/1:0,24,0:24:73:1047,73,0,1047,73,1047:0,0,16,8 +chrX 1070549 . A . . END=1070706 GT:DP:GQ:MIN_DP:PL 0/0:44:50:44:0,50,958 +chrX 1070707 . G . . END=1070708 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,888 +chrX 1070709 . A AAGG, 1274.03 . AS_QUALapprox=|1288|0;AS_VarDP=0|30|0;DP=33;QUALapprox=1288;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=30 GT:AD:DP:GQ:PL:SB 1/1:0,30,0:30:90:1288,90,0,1288,90,1288:0,0,23,7 +chrX 1070710 . A . . END=1070743 GT:DP:GQ:MIN_DP:PL 0/0:31:66:31:0,66,809 +chrX 1070744 . GGAAA G, 744.60 . AS_QUALapprox=|752|0;AS_VarDP=17|20|0;BaseQRankSum=2.416;DP=40;MQRankSum=-0.877;QUALapprox=752;RAW_GT_COUNT=0,1,0;RAW_MQandDP=135129,40;ReadPosRankSum=-2.218;VarDP=37 GT:AD:DP:GQ:PL:SB 0/1:17,20,0:37:99:752,0,654,803,714,1517:10,7,11,9 +chrX 1070749 . G . . END=1070780 GT:DP:GQ:MIN_DP:PL 0/0:39:87:39:0,87,1187 +chrX 1070781 . G C, 343.64 . AS_QUALapprox=|351|0;AS_VarDP=21|16|0;BaseQRankSum=-1.591;DP=38;MQRankSum=0.453;QUALapprox=351;RAW_GT_COUNT=0,1,0;RAW_MQandDP=130538,38;ReadPosRankSum=1.402;VarDP=37 GT:AD:DP:GQ:PL:SB 0/1:21,16,0:37:99:351,0,759,414,806,1220:12,9,9,7 +chrX 1070782 . A . . END=1070797 GT:DP:GQ:MIN_DP:PL 0/0:31:60:31:0,60,900 +chrX 1070798 . G GAAAGA, 0.02 . AS_QUALapprox=|2|0;AS_VarDP=0|0|0;BaseQRankSum=0.807;DP=33;MQRankSum=0.555;QUALapprox=2;RAW_GT_COUNT=0,1,0;RAW_MQandDP=115290,33;ReadPosRankSum=1.581;VarDP=14 GT:AD:DP:GQ:PL:SB 0/1:13,1,0:14:2:2,0,540,42,543,585:8,5,1,0 +chrX 1070799 . A . . END=1070811 GT:DP:GQ:MIN_DP:PL 0/0:25:39:24:0,39,585 +chrX 1070812 . G GA, 645.70 . AS_QUALapprox=|658|0;AS_VarDP=1|16|0;BaseQRankSum=-0.871;DP=27;MQRankSum=0.000;QUALapprox=658;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93690,27;ReadPosRankSum=-0.116;VarDP=17 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:1,16,0:17:7:0|1:1070812_G_GA:658,7,0,661,49,703:1070812:1,0,8,8 +chrX 1070813 . A . . END=1070843 GT:DP:GQ:MIN_DP:PL 0/0:24:32:24:0,32,568 +chrX 1070844 . GAA G, 1124.02 . AS_QUALapprox=|1138|0;AS_VarDP=1|27|0;BaseQRankSum=-0.969;DP=30;MQRankSum=-0.231;QUALapprox=1138;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100666,30;ReadPosRankSum=1.222;VarDP=28 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:1,27,0:28:39:0|1:1070812_G_GA:1138,39,0,1141,81,1183:1070812:1,0,13,14 +chrX 1070847 . A . . END=1070853 GT:DP:GQ:MIN_DP:PL 0/0:28:57:28:0,57,674 +chrX 1070854 . AAG A, 1153.03 . AS_QUALapprox=|1167|0;AS_VarDP=1|28|0;BaseQRankSum=-0.587;DP=34;MQRankSum=-0.226;QUALapprox=1167;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115066,34;ReadPosRankSum=1.435;VarDP=29 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:1,28,0:29:42:0|1:1070812_G_GA:1167,42,0,1170,84,1212:1070812:1,0,14,14 +chrX 1070857 . A . . END=1070912 GT:DP:GQ:MIN_DP:PL 0/0:41:53:41:0,53,888 +chrX 1070913 . A AAAG, 2178.03 . AS_QUALapprox=|2192|0;AS_VarDP=0|51|0;DP=53;QUALapprox=2192;RAW_GT_COUNT=0,0,1;RAW_MQandDP=188105,53;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:2192,153,0,2192,153,2192:0,0,21,30 +chrX 1070914 . A . . END=1071131 GT:DP:GQ:MIN_DP:PL 0/0:60:85:60:0,85,1800 +chrX 1071132 . T C, 852.64 . AS_QUALapprox=|860|0;AS_VarDP=29|32|0;BaseQRankSum=0.041;DP=64;MQRankSum=-0.501;QUALapprox=860;RAW_GT_COUNT=0,1,0;RAW_MQandDP=227922,64;ReadPosRankSum=-1.589;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:29,32,0:61:99:860,0,744,946,840,1786:11,18,16,16 +chrX 1071133 . C . . END=1071248 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1071249 . G A, 1822.06 . AS_QUALapprox=|1836|0;AS_VarDP=0|54|0;DP=58;QUALapprox=1836;RAW_GT_COUNT=0,0,1;RAW_MQandDP=204322,58;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:1836,162,0,1836,162,1836:0,0,35,19 +chrX 1071250 . G . . END=1071925 GT:DP:GQ:MIN_DP:PL 0/0:63:84:63:0,84,1305 +chrX 1071926 . C T, 930.64 . AS_QUALapprox=|938|0;AS_VarDP=24|35|0;BaseQRankSum=-0.655;DP=59;MQRankSum=-0.263;QUALapprox=938;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205761,59;ReadPosRankSum=-0.671;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:24,35,0:59:99:938,0,607,1010,712,1722:14,10,20,15 +chrX 1071927 . G . . END=1072114 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,104,1594 +chrX 1072115 . C T, 711.64 . AS_QUALapprox=|719|0;AS_VarDP=25|26|0;BaseQRankSum=1.479;DP=53;MQRankSum=0.000;QUALapprox=719;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=-0.481;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:25,26,0:51:99:719,0,645,794,723,1517:10,15,9,17 +chrX 1072116 . G . . END=1072173 GT:DP:GQ:MIN_DP:PL 0/0:42:74:42:0,74,1107 +chrX 1072174 . T G, 570.64 . AS_QUALapprox=|578|0;AS_VarDP=16|21|0;BaseQRankSum=0.000;DP=37;MQRankSum=0.000;QUALapprox=578;RAW_GT_COUNT=0,1,0;RAW_MQandDP=133200,37;ReadPosRankSum=-1.289;VarDP=37 GT:AD:DP:GQ:PL:SB 0/1:16,21,0:37:99:578,0,414,626,477,1103:7,9,11,10 +chrX 1072175 . T . . END=1072428 GT:DP:GQ:MIN_DP:PL 0/0:63:61:63:0,61,1128 +chrX 1072429 . A G, 2025.06 . AS_QUALapprox=|2039|0;AS_VarDP=0|63|0;DP=65;QUALapprox=2039;RAW_GT_COUNT=0,0,1;RAW_MQandDP=231184,65;VarDP=63 GT:AD:DP:GQ:PL:SB 1/1:0,63,0:63:99:2039,189,0,2039,189,2039:0,0,29,34 +chrX 1072430 . G . . END=1072454 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 1072455 . T G, 601.64 . AS_QUALapprox=|609|0;AS_VarDP=40|25|0;BaseQRankSum=-1.159;DP=68;MQRankSum=0.000;QUALapprox=609;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241984,68;ReadPosRankSum=0.061;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:40,25,0:65:99:609,0,1156,729,1230,1959:14,26,11,14 +chrX 1072456 . C . . END=1072634 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1072635 . C T, 831.64 . AS_QUALapprox=|839|0;AS_VarDP=28|30|0;BaseQRankSum=1.239;DP=60;MQRankSum=0.000;QUALapprox=839;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=0.397;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:28,30,0:58:99:839,0,724,923,814,1737:17,11,20,10 +chrX 1072636 . G . . END=1072730 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 1072731 . G C, 577.64 . AS_QUALapprox=|585|0;AS_VarDP=27|21|0;BaseQRankSum=1.291;DP=49;MQRankSum=0.000;QUALapprox=585;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=0.052;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:27,21,0:48:99:585,0,774,666,837,1503:19,8,12,9 +chrX 1072732 . A . . END=1073007 GT:DP:GQ:MIN_DP:PL 0/0:44:23:40:0,23,1152 +chrX 1073008 . A . . END=1073010 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,838 +chrX 1073011 . CAAAA C,CAAA,CAAAAA, 512.02 . AS_QUALapprox=|460|128|8|0;AS_VarDP=2|14|6|2|0;BaseQRankSum=1.107;DP=43;MQRankSum=-0.151;QUALapprox=529;RAW_GT_COUNT=0,0,1;RAW_MQandDP=150800,43;ReadPosRankSum=0.314;VarDP=24 GT:AD:DP:GQ:PL:SB 1/2:2,14,6,2,0:24:69:529,69,329,401,0,412,521,129,399,592,551,173,446,594,637:1,1,17,5 +chrX 1073016 . A . . END=1073035 GT:DP:GQ:MIN_DP:PL 0/0:53:90:53:0,90,1588 +chrX 1073036 . G . . END=1073036 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,1206 +chrX 1073037 . A . . END=1073337 GT:DP:GQ:MIN_DP:PL 0/0:52:34:49:0,34,1256 +chrX 1073338 . G GCATAA, 748.03 . AS_QUALapprox=|762|0;AS_VarDP=0|23|0;DP=49;QUALapprox=762;RAW_GT_COUNT=0,0,1;RAW_MQandDP=174321,49;VarDP=23 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,23,0:23:68:0|1:1073338_G_GCATAA:762,68,0,763,69,764:1073338:0,0,6,17 +chrX 1073339 . C . . END=1073354 GT:DP:GQ:MIN_DP:PL 0/0:43:63:40:0,63,945 +chrX 1073355 . G A,GTAACA, 1004.06 . AS_QUALapprox=|1018|147|0;AS_VarDP=0|23|0|0;DP=43;QUALapprox=1018;RAW_GT_COUNT=0,0,1;RAW_MQandDP=152721,43;VarDP=23 GT:AD:DP:GQ:PL:SB 1/1:0,23,0,0:23:68:1018,68,0,871,118,1270,979,115,1105,1145:0,0,6,17 +chrX 1073356 . T . . END=1073397 GT:DP:GQ:MIN_DP:PL 0/0:71:39:69:0,39,1800 +chrX 1073398 . C . . END=1073398 GT:DP:GQ:MIN_DP:PL 0/0:61:9:61:0,9,1621 +chrX 1073399 . A . . END=1073399 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1073400 . C . . END=1073400 GT:DP:GQ:MIN_DP:PL 0/0:62:0:62:0,0,1487 +chrX 1073401 . A . . END=1073430 GT:DP:GQ:MIN_DP:PL 0/0:70:23:59:0,23,1471 +chrX 1073431 . T . . END=1073431 GT:DP:GQ:MIN_DP:PL 0/0:70:0:70:0,0,1430 +chrX 1073432 . A . . END=1073432 GT:DP:GQ:MIN_DP:PL 0/0:78:99:78:0,120,1800 +chrX 1073433 . T . . END=1073433 GT:DP:GQ:MIN_DP:PL 0/0:70:0:70:0,0,1656 +chrX 1073434 . A . . END=1073437 GT:DP:GQ:MIN_DP:PL 0/0:80:99:80:0,120,1800 +chrX 1073438 . T . . END=1073438 GT:DP:GQ:MIN_DP:PL 0/0:69:0:69:0,0,1641 +chrX 1073439 . A . . END=1073442 GT:DP:GQ:MIN_DP:PL 0/0:78:99:78:0,120,1800 +chrX 1073443 . T . . END=1073443 GT:DP:GQ:MIN_DP:PL 0/0:70:0:70:0,0,1332 +chrX 1073444 . A . . END=1073449 GT:DP:GQ:MIN_DP:PL 0/0:81:99:81:0,120,1800 +chrX 1073450 . T . . END=1073450 GT:DP:GQ:MIN_DP:PL 0/0:71:0:71:0,0,1574 +chrX 1073451 . A . . END=1073455 GT:DP:GQ:MIN_DP:PL 0/0:80:99:80:0,120,1800 +chrX 1073456 . T . . END=1073456 GT:DP:GQ:MIN_DP:PL 0/0:69:0:69:0,0,1582 +chrX 1073457 . T A, 1555.06 . AS_QUALapprox=|1569|0;AS_VarDP=0|48|0;DP=52;QUALapprox=1569;RAW_GT_COUNT=0,0,1;RAW_MQandDP=186964,52;VarDP=48 GT:AD:DP:GQ:PL:SB 1/1:0,48,0:48:99:1569,144,0,1569,144,1569:0,0,22,26 +chrX 1073458 . T . . END=1073501 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,117,1558 +chrX 1073502 . T . . END=1073502 GT:DP:GQ:MIN_DP:PL 0/0:53:11:53:0,11,1406 +chrX 1073503 . A . . END=1073505 GT:DP:GQ:MIN_DP:PL 0/0:79:58:79:0,58,1800 +chrX 1073506 . T . . END=1073506 GT:DP:GQ:MIN_DP:PL 0/0:73:0:73:0,0,1700 +chrX 1073507 . A . . END=1073552 GT:DP:GQ:MIN_DP:PL 0/0:39:44:33:0,44,863 +chrX 1073553 . AAAAT A, 182.60 . AS_QUALapprox=|190|0;AS_VarDP=24|9|0;BaseQRankSum=-1.364;DP=44;MQRankSum=1.319;QUALapprox=190;RAW_GT_COUNT=0,1,0;RAW_MQandDP=148644,44;ReadPosRankSum=1.782;VarDP=33 GT:AD:DP:GQ:PL:SB 0/1:24,9,0:33:99:190,0,913,262,940,1201:13,11,5,4 +chrX 1073558 . A . . END=1073667 GT:DP:GQ:MIN_DP:PL 0/0:46:50:40:0,50,1044 +chrX 1073668 . A AAAT, 581.60 . AS_QUALapprox=|589|0;AS_VarDP=19|16|0;BaseQRankSum=-1.400;DP=45;MQRankSum=-2.233;QUALapprox=589;RAW_GT_COUNT=0,1,0;RAW_MQandDP=131532,45;ReadPosRankSum=0.282;VarDP=35 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:19,16,0:35:99:0|1:1073668_A_AAAT:589,0,749,646,798,1444:1073668:9,10,6,10 +chrX 1073669 . A . . END=1073672 GT:DP:GQ:MIN_DP:PL 0/0:36:78:36:0,78,928 +chrX 1073673 . G A, 581.64 . AS_QUALapprox=|589|0;AS_VarDP=19|16|0;BaseQRankSum=-0.452;DP=41;MQRankSum=-2.233;QUALapprox=589;RAW_GT_COUNT=0,1,0;RAW_MQandDP=120003,41;ReadPosRankSum=-0.282;VarDP=35 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:19,16,0:35:99:0|1:1073668_A_AAAT:589,0,749,646,798,1444:1073668:9,10,6,10 +chrX 1073674 . A . . END=1073753 GT:DP:GQ:MIN_DP:PL 0/0:38:40:28:0,40,575 +chrX 1073754 . AAAAAT A, 0.08 . AS_QUALapprox=|4|0;AS_VarDP=24|4|0;BaseQRankSum=-1.862;DP=44;MQRankSum=-1.510;QUALapprox=4;RAW_GT_COUNT=0,1,0;RAW_MQandDP=132317,44;ReadPosRankSum=-0.410;VarDP=28 GT:AD:DP:GQ:PL:SB 0/1:24,4,0:28:4:4,0,931,76,943,1019:18,6,0,4 +chrX 1073760 . A . . END=1073767 GT:DP:GQ:MIN_DP:PL 0/0:33:60:33:0,60,900 +chrX 1073768 . A . . END=1073772 GT:DP:GQ:MIN_DP:PL 0/0:43:4:43:0,4,1280 +chrX 1073773 . A . . END=1073775 GT:DP:GQ:MIN_DP:PL 0/0:36:57:36:0,57,855 +chrX 1073776 . AT A, 0.08 . AS_QUALapprox=|4|0;AS_VarDP=31|6|0;BaseQRankSum=-0.335;DP=43;MQRankSum=0.684;QUALapprox=4;RAW_GT_COUNT=0,1,0;RAW_MQandDP=135140,43;ReadPosRankSum=-2.172;VarDP=37 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:31,6,0:37:4:0|1:1073759_T_A:4,0,1243,97,1258,1356:1073759:20,11,5,1 +chrX 1073778 . A . . END=1073780 GT:DP:GQ:MIN_DP:PL 0/0:34:54:34:0,54,810 +chrX 1073781 . T . . END=1073781 GT:DP:GQ:MIN_DP:PL 0/0:39:3:39:0,3,664 +chrX 1073782 . A . . END=1073785 GT:DP:GQ:MIN_DP:PL 0/0:31:60:31:0,60,900 +chrX 1073786 . T . . END=1073789 GT:DP:GQ:MIN_DP:PL 0/0:64:0:36:0,0,859 +chrX 1073790 . A . . END=1073792 GT:DP:GQ:MIN_DP:PL 0/0:92:99:92:0,120,1800 +chrX 1073793 . T . . END=1073793 GT:DP:GQ:MIN_DP:PL 0/0:87:0:87:0,0,1858 +chrX 1073794 . A . . END=1073797 GT:DP:GQ:MIN_DP:PL 0/0:88:78:88:0,78,1800 +chrX 1073798 . T . . END=1073798 GT:DP:GQ:MIN_DP:PL 0/0:76:0:76:0,0,1128 +chrX 1073799 . A . . END=1073799 GT:DP:GQ:MIN_DP:PL 0/0:84:99:84:0,120,1800 +chrX 1073800 . T . . END=1073800 GT:DP:GQ:MIN_DP:PL 0/0:76:0:76:0,0,1166 +chrX 1073801 . A . . END=1073804 GT:DP:GQ:MIN_DP:PL 0/0:78:93:78:0,93,1800 +chrX 1073805 . T . . END=1073805 GT:DP:GQ:MIN_DP:PL 0/0:73:0:73:0,0,1558 +chrX 1073806 . A . . END=1073808 GT:DP:GQ:MIN_DP:PL 0/0:75:99:75:0,120,1800 +chrX 1073809 . T . . END=1073809 GT:DP:GQ:MIN_DP:PL 0/0:61:0:61:0,0,1050 +chrX 1073810 . A . . END=1073812 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1073813 . T . . END=1073813 GT:DP:GQ:MIN_DP:PL 0/0:60:0:60:0,0,1150 +chrX 1073814 . A . . END=1073816 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 1073817 . T . . END=1073817 GT:DP:GQ:MIN_DP:PL 0/0:64:0:64:0,0,1537 +chrX 1073818 . A . . END=1073821 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 1073822 . T . . END=1073822 GT:DP:GQ:MIN_DP:PL 0/0:54:0:54:0,0,1090 +chrX 1073823 . A . . END=1073823 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1073824 . T . . END=1073824 GT:DP:GQ:MIN_DP:PL 0/0:55:0:55:0,0,969 +chrX 1073825 . A . . END=1073828 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 1073829 . T . . END=1073829 GT:DP:GQ:MIN_DP:PL 0/0:61:0:61:0,0,1453 +chrX 1073830 . A . . END=1073830 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 1073831 . T . . END=1073831 GT:DP:GQ:MIN_DP:PL 0/0:55:0:55:0,0,799 +chrX 1073832 . A . . END=1073835 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1073836 . T . . END=1073836 GT:DP:GQ:MIN_DP:PL 0/0:53:0:53:0,0,1195 +chrX 1073837 . A . . END=1073840 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,114,1710 +chrX 1073841 . T . . END=1073841 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,924 +chrX 1073842 . A . . END=1073845 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,102,1530 +chrX 1073846 . T . . END=1073848 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,644 +chrX 1073849 . A . . END=1073852 GT:DP:GQ:MIN_DP:PL 0/0:43:93:43:0,93,1395 +chrX 1073853 . G . . END=1073854 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,743 +chrX 1073855 . A . . END=1073865 GT:DP:GQ:MIN_DP:PL 0/0:35:23:34:0,23,765 +chrX 1073866 . T . . END=1073866 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,580 +chrX 1073867 . A . . END=1073870 GT:DP:GQ:MIN_DP:PL 0/0:32:39:31:0,39,585 +chrX 1073871 . T . . END=1073871 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,457 +chrX 1073872 . A . . END=1073875 GT:DP:GQ:MIN_DP:PL 0/0:30:39:29:0,39,585 +chrX 1073876 . T . . END=1073876 GT:DP:GQ:MIN_DP:PL 0/0:27:0:27:0,0,282 +chrX 1073877 . A . . END=1073880 GT:DP:GQ:MIN_DP:PL 0/0:26:36:24:0,36,540 +chrX 1073881 . T . . END=1073881 GT:DP:GQ:MIN_DP:PL 0/0:23:0:23:0,0,194 +chrX 1073882 . A . . END=1073886 GT:DP:GQ:MIN_DP:PL 0/0:22:34:21:0,34,592 +chrX 1073887 . T . . END=1073887 GT:DP:GQ:MIN_DP:PL 0/0:18:0:18:0,0,336 +chrX 1073888 . A . . END=1073888 GT:DP:GQ:MIN_DP:PL 0/0:19:39:19:0,39,585 +chrX 1073889 . T . . END=1073889 GT:DP:GQ:MIN_DP:PL 0/0:18:0:18:0,0,159 +chrX 1073890 . A . . END=1073894 GT:DP:GQ:MIN_DP:PL 0/0:17:36:17:0,36,540 +chrX 1073895 . T . . END=1073895 GT:DP:GQ:MIN_DP:PL 0/0:17:0:17:0,0,0 +chrX 1073896 . A . . END=1073898 GT:DP:GQ:MIN_DP:PL 0/0:17:39:17:0,39,585 +chrX 1073899 . G . . END=1073900 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,0 +chrX 1073901 . A . . END=1073903 GT:DP:GQ:MIN_DP:PL 0/0:18:48:18:0,48,720 +chrX 1073904 . A . . END=1073908 GT:DP:GQ:MIN_DP:PL 0/0:18:0:18:0,0,0 +chrX 1073909 . A . . END=1073911 GT:DP:GQ:MIN_DP:PL 0/0:19:42:19:0,42,630 +chrX 1073912 . T . . END=1073912 GT:DP:GQ:MIN_DP:PL 0/0:20:0:20:0,0,237 +chrX 1073913 . A . . END=1073916 GT:DP:GQ:MIN_DP:PL 0/0:19:45:19:0,45,675 +chrX 1073917 . A . . END=1073917 GT:DP:GQ:MIN_DP:PL 0/0:21:0:21:0,0,0 +chrX 1073918 . A . . END=1073921 GT:DP:GQ:MIN_DP:PL 0/0:21:28:20:0,28,661 +chrX 1073922 . T . . END=1073922 GT:DP:GQ:MIN_DP:PL 0/0:22:0:22:0,0,100 +chrX 1073923 . A . . END=1073923 GT:DP:GQ:MIN_DP:PL 0/0:22:31:22:0,31,675 +chrX 1073924 . T . . END=1073924 GT:DP:GQ:MIN_DP:PL 0/0:23:0:23:0,0,352 +chrX 1073925 . A . . END=1073928 GT:DP:GQ:MIN_DP:PL 0/0:24:66:24:0,66,990 +chrX 1073929 . T A, 0.72 . AS_QUALapprox=|7|0;AS_VarDP=10|4|0;BaseQRankSum=-1.108;DP=15;MQRankSum=-0.295;QUALapprox=7;RAW_GT_COUNT=0,1,0;RAW_MQandDP=46949,15;ReadPosRankSum=-0.071;VarDP=14 GT:AD:DP:GQ:PL:SB 0/1:10,4,0:14:7:7,0,249,36,258,294:5,5,0,4 +chrX 1073930 . A . . END=1074026 GT:DP:GQ:MIN_DP:PL 0/0:27:25:14:0,25,416 +chrX 1074027 . T . . END=1074027 GT:DP:GQ:MIN_DP:PL 0/0:75:0:75:0,0,1731 +chrX 1074028 . A . . END=1074042 GT:DP:GQ:MIN_DP:PL 0/0:78:64:78:0,64,1798 +chrX 1074043 . T . . END=1074044 GT:DP:GQ:MIN_DP:PL 0/0:71:0:71:0,0,1478 +chrX 1074045 . A . . END=1074052 GT:DP:GQ:MIN_DP:PL 0/0:80:77:80:0,77,1774 +chrX 1074053 . T . . END=1074053 GT:DP:GQ:MIN_DP:PL 0/0:72:0:72:0,0,1603 +chrX 1074054 . A . . END=1074064 GT:DP:GQ:MIN_DP:PL 0/0:80:40:80:0,40,1795 +chrX 1074065 . T . . END=1074065 GT:DP:GQ:MIN_DP:PL 0/0:75:0:75:0,0,1669 +chrX 1074066 . A . . END=1074069 GT:DP:GQ:MIN_DP:PL 0/0:82:99:82:0,120,1800 +chrX 1074070 . T . . END=1074070 GT:DP:GQ:MIN_DP:PL 0/0:78:0:78:0,0,1801 +chrX 1074071 . A . . END=1074073 GT:DP:GQ:MIN_DP:PL 0/0:80:99:80:0,120,1800 +chrX 1074074 . T . . END=1074074 GT:DP:GQ:MIN_DP:PL 0/0:77:0:77:0,0,1811 +chrX 1074075 . A . . END=1074077 GT:DP:GQ:MIN_DP:PL 0/0:80:99:80:0,120,1800 +chrX 1074078 . T . . END=1074078 GT:DP:GQ:MIN_DP:PL 0/0:77:0:77:0,0,1738 +chrX 1074079 . A . . END=1074081 GT:DP:GQ:MIN_DP:PL 0/0:80:99:80:0,120,1800 +chrX 1074082 . T . . END=1074082 GT:DP:GQ:MIN_DP:PL 0/0:72:0:72:0,0,1618 +chrX 1074083 . A . . END=1074088 GT:DP:GQ:MIN_DP:PL 0/0:80:43:80:0,43,1800 +chrX 1074089 . T . . END=1074089 GT:DP:GQ:MIN_DP:PL 0/0:76:0:76:0,0,1577 +chrX 1074090 . A . . END=1074093 GT:DP:GQ:MIN_DP:PL 0/0:82:99:82:0,120,1800 +chrX 1074094 . T . . END=1074094 GT:DP:GQ:MIN_DP:PL 0/0:74:0:74:0,0,1587 +chrX 1074095 . A . . END=1074095 GT:DP:GQ:MIN_DP:PL 0/0:82:99:82:0,120,1800 +chrX 1074096 . T . . END=1074096 GT:DP:GQ:MIN_DP:PL 0/0:74:0:74:0,0,1557 +chrX 1074097 . A . . END=1074100 GT:DP:GQ:MIN_DP:PL 0/0:83:99:83:0,120,1800 +chrX 1074101 . T . . END=1074101 GT:DP:GQ:MIN_DP:PL 0/0:79:0:79:0,0,1415 +chrX 1074102 . A . . END=1074105 GT:DP:GQ:MIN_DP:PL 0/0:81:99:81:0,120,1800 +chrX 1074106 . T . . END=1074106 GT:DP:GQ:MIN_DP:PL 0/0:77:0:77:0,0,1690 +chrX 1074107 . A . . END=1074110 GT:DP:GQ:MIN_DP:PL 0/0:82:99:82:0,120,1800 +chrX 1074111 . T . . END=1074113 GT:DP:GQ:MIN_DP:PL 0/0:73:0:73:0,0,1283 +chrX 1074114 . A . . END=1074117 GT:DP:GQ:MIN_DP:PL 0/0:82:99:82:0,120,1800 +chrX 1074118 . G . . END=1074119 GT:DP:GQ:MIN_DP:PL 0/0:73:0:73:0,0,1458 +chrX 1074120 . A . . END=1074123 GT:DP:GQ:MIN_DP:PL 0/0:81:99:81:0,120,1800 +chrX 1074124 . T . . END=1074124 GT:DP:GQ:MIN_DP:PL 0/0:76:0:76:0,0,1508 +chrX 1074125 . A . . END=1074128 GT:DP:GQ:MIN_DP:PL 0/0:82:99:82:0,120,1800 +chrX 1074129 . T . . END=1074129 GT:DP:GQ:MIN_DP:PL 0/0:75:0:75:0,0,1531 +chrX 1074130 . A . . END=1074130 GT:DP:GQ:MIN_DP:PL 0/0:78:99:78:0,120,1800 +chrX 1074131 . T . . END=1074131 GT:DP:GQ:MIN_DP:PL 0/0:78:0:78:0,0,1665 +chrX 1074132 . A . . END=1074134 GT:DP:GQ:MIN_DP:PL 0/0:81:99:81:0,120,1800 +chrX 1074135 . G . . END=1074136 GT:DP:GQ:MIN_DP:PL 0/0:69:0:69:0,0,1317 +chrX 1074137 . A . . END=1074198 GT:DP:GQ:MIN_DP:PL 0/0:39:35:29:0,35,819 +chrX 1074199 . TAAAATAAAATAAAATATA T, 205.56 . AS_QUALapprox=|213|0;AS_VarDP=19|7|0;BaseQRankSum=1.813;DP=32;MQRankSum=0.656;QUALapprox=213;RAW_GT_COUNT=0,1,0;RAW_MQandDP=115081,32;ReadPosRankSum=-1.090;VarDP=26 GT:AD:DP:GQ:PL:SB 0/1:19,7,0:26:99:213,0,710,260,753,1076:11,8,2,4 +chrX 1074218 . A . . END=1074231 GT:DP:GQ:MIN_DP:PL 0/0:72:85:72:0,85,1772 +chrX 1074232 . T . . END=1074232 GT:DP:GQ:MIN_DP:PL 0/0:68:0:68:0,0,1605 +chrX 1074233 . A . . END=1074239 GT:DP:GQ:MIN_DP:PL 0/0:68:32:67:0,32,1598 +chrX 1074240 . T . . END=1074240 GT:DP:GQ:MIN_DP:PL 0/0:65:0:65:0,0,1452 +chrX 1074241 . A . . END=1074249 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,111,1672 +chrX 1074250 . T . . END=1074250 GT:DP:GQ:MIN_DP:PL 0/0:59:5:59:0,5,1504 +chrX 1074251 . A . . END=1074388 GT:DP:GQ:MIN_DP:PL 0/0:67:48:67:0,48,1506 +chrX 1074389 . A G, 983.64 . AS_QUALapprox=|991|0;AS_VarDP=36|39|0;BaseQRankSum=-0.034;DP=79;MQRankSum=0.000;QUALapprox=991;RAW_GT_COUNT=0,1,0;RAW_MQandDP=284400,79;ReadPosRankSum=1.002;VarDP=75 GT:AD:DP:GQ:PL:SB 0/1:36,39,0:75:99:991,0,897,1099,1013,2112:20,16,21,18 +chrX 1074390 . T . . END=1074423 GT:DP:GQ:MIN_DP:PL 0/0:76:99:76:0,120,1800 +chrX 1074424 . C A, 922.64 . AS_QUALapprox=|930|0;AS_VarDP=37|35|0;BaseQRankSum=-0.724;DP=77;MQRankSum=0.000;QUALapprox=930;RAW_GT_COUNT=0,1,0;RAW_MQandDP=277200,77;ReadPosRankSum=0.231;VarDP=72 GT:AD:DP:GQ:PL:SB 0/1:37,35,0:72:99:930,0,1020,1041,1125,2166:18,19,15,20 +chrX 1074425 . A . . END=1074474 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1074475 . A G, 2044.06 . AS_QUALapprox=|2058|0;AS_VarDP=0|62|0;DP=67;QUALapprox=2058;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:0,62,0:62:99:2058,186,0,2058,186,2058:0,0,24,38 +chrX 1074476 . A . . END=1075282 GT:DP:GQ:MIN_DP:PL 0/0:50:39:46:0,39,993 +chrX 1075283 . G . . END=1075283 GT:DP:GQ:MIN_DP:PL 0/0:35:16:35:0,16,888 +chrX 1075284 . A . . END=1075298 GT:DP:GQ:MIN_DP:PL 0/0:35:47:35:0,47,913 +chrX 1075299 . A . . END=1075299 GT:DP:GQ:MIN_DP:PL 0/0:34:4:34:0,4,864 +chrX 1075300 . G . . END=1075408 GT:DP:GQ:MIN_DP:PL 0/0:43:45:38:0,45,982 +chrX 1075409 . T . . END=1075409 GT:DP:GQ:MIN_DP:PL 0/0:35:5:35:0,5,744 +chrX 1075410 . C . . END=1075425 GT:DP:GQ:MIN_DP:PL 0/0:37:43:37:0,43,932 +chrX 1075426 . G . . END=1075426 GT:DP:GQ:MIN_DP:PL 0/0:33:14:33:0,14,787 +chrX 1075427 . A . . END=1075525 GT:DP:GQ:MIN_DP:PL 0/0:41:49:41:0,49,901 +chrX 1075526 . T C, 1319.06 . AS_QUALapprox=|1333|0;AS_VarDP=0|42|0;DP=43;QUALapprox=1333;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154800,43;VarDP=42 GT:AD:DP:GQ:PL:SB 1/1:0,42,0:42:99:1333,126,0,1333,126,1333:0,0,26,16 +chrX 1075527 . T . . END=1075572 GT:DP:GQ:MIN_DP:PL 0/0:45:85:45:0,85,1162 +chrX 1075573 . G A, 1518.06 . AS_QUALapprox=|1532|0;AS_VarDP=0|49|0;DP=53;QUALapprox=1532;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1532,147,0,1532,147,1532:0,0,31,18 +chrX 1075574 . C . . END=1075638 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,118,1373 +chrX 1075639 . A C, 692.64 . AS_QUALapprox=|700|0;AS_VarDP=27|29|0;BaseQRankSum=-1.998;DP=57;MQRankSum=0.000;QUALapprox=700;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=1.493;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:27,29,0:56:99:700,0,728,781,814,1595:12,15,15,14 +chrX 1075640 . G . . END=1075770 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 1075771 . G C,GATAC, 689.64 . AS_QUALapprox=|697|0|0;AS_VarDP=32|23|0|0;BaseQRankSum=0.768;DP=67;MQRankSum=0.000;QUALapprox=697;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=-0.034;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:32,23,0,0:55:99:697,0,1015,767,1040,2328,814,1098,2115,2113:20,12,12,11 +chrX 1075772 . A . . END=1076248 GT:DP:GQ:MIN_DP:PL 0/0:60:83:60:0,83,1340 +chrX 1076249 . G GA, 1153.03 . AS_QUALapprox=|1167|0;AS_VarDP=0|49|0;DP=57;QUALapprox=1167;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1167,145,0,1167,145,1167:0,0,31,18 +chrX 1076250 . A . . END=1076279 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1076280 . C T, 1638.06 . AS_QUALapprox=|1652|0;AS_VarDP=1|53|0;BaseQRankSum=-0.548;DP=59;MQRankSum=0.000;QUALapprox=1652;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;ReadPosRankSum=0.128;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:1,53,0:54:99:1652,127,0,1655,159,1687:0,1,29,24 +chrX 1076281 . C . . END=1076677 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 1076678 . CA C, 1018.03 . AS_QUALapprox=|1032|0;AS_VarDP=1|40|0;DP=56;MQRankSum=0.000;QUALapprox=1032;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=41 GT:AD:DP:GQ:PL:SB 1/1:1,40,0:41:97:1032,97,0,1035,120,1058:0,1,18,22 +chrX 1076680 . A . . END=1076932 GT:DP:GQ:MIN_DP:PL 0/0:41:58:41:0,58,963 +chrX 1076933 . T C, 1463.06 . AS_QUALapprox=|1477|0;AS_VarDP=0|45|0;DP=45;QUALapprox=1477;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162000,45;VarDP=45 GT:AD:DP:GQ:PL:SB 1/1:0,45,0:45:99:1477,135,0,1477,135,1477:0,0,27,18 +chrX 1076934 . G . . END=1077470 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,100,1116 +chrX 1077471 . A G, 1306.06 . AS_QUALapprox=|1320|0;AS_VarDP=0|40|0;DP=43;QUALapprox=1320;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154800,43;VarDP=40 GT:AD:DP:GQ:PL:SB 1/1:0,40,0:40:99:1320,120,0,1320,120,1320:0,0,23,17 +chrX 1077472 . C . . END=1077833 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,101,1377 +chrX 1077834 . A G, 1792.06 . AS_QUALapprox=|1806|0;AS_VarDP=0|56|0;DP=61;QUALapprox=1806;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219025,61;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1806,167,0,1806,167,1806:0,0,21,35 +chrX 1077835 . A . . END=1077864 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 1077865 . G A, 1758.06 . AS_QUALapprox=|1772|0;AS_VarDP=0|53|0;DP=55;QUALapprox=1772;RAW_GT_COUNT=0,0,1;RAW_MQandDP=197425,55;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1772,159,0,1772,159,1772:0,0,20,33 +chrX 1077866 . T . . END=1078062 GT:DP:GQ:MIN_DP:PL 0/0:51:49:51:0,49,1082 +chrX 1078063 . C T, 1171.06 . AS_QUALapprox=|1185|0;AS_VarDP=0|37|0;DP=38;QUALapprox=1185;RAW_GT_COUNT=0,0,1;RAW_MQandDP=134100,38;VarDP=37 GT:AD:DP:GQ:PL:SB 1/1:0,37,0:37:99:1185,110,0,1185,110,1185:0,0,21,16 +chrX 1078064 . A . . END=1078129 GT:DP:GQ:MIN_DP:PL 0/0:31:66:31:0,66,824 +chrX 1078130 . G GTA,GTATATA,GTGTGTA,GTGTGTGTA,GTGTGTATATA,GTGTGTGTATATA, 1142.02 . AS_QUALapprox=|62|61|245|654|552|219|0;AS_VarDP=0|0|0|0|13|9|0|0;DP=43;QUALapprox=1159;RAW_GT_COUNT=0,0,1;RAW_MQandDP=142895,43;VarDP=22 GT:AD:DP:GQ:PL:SB 4/5:0,0,0,0,13,9,0,0:22:99:1159,1097,1383,1098,1300,1427,914,1005,930,943,550,572,497,502,505,607,709,838,468,0,786,940,1009,1139,726,350,761,1089,1168,1296,1329,1001,572,812,1113,1382:0,0,11,11 +chrX 1078131 . T . . END=1078154 GT:DP:GQ:MIN_DP:PL 0/0:52:27:51:0,27,1480 +chrX 1078155 . C . . END=1078155 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,1158 +chrX 1078156 . A . . END=1078256 GT:DP:GQ:MIN_DP:PL 0/0:50:76:50:0,76,1314 +chrX 1078257 . T TG, 1805.03 . AS_QUALapprox=|1819|0;AS_VarDP=0|49|0;DP=52;QUALapprox=1819;RAW_GT_COUNT=0,0,1;RAW_MQandDP=184625,52;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1819,147,0,1819,147,1819:0,0,29,20 +chrX 1078258 . G . . END=1078313 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,117,1755 +chrX 1078314 . G A, 1613.06 . AS_QUALapprox=|1627|0;AS_VarDP=0|50|0;DP=51;QUALapprox=1627;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1627,150,0,1627,150,1627:0,0,28,22 +chrX 1078315 . G . . END=1079311 GT:DP:GQ:MIN_DP:PL 0/0:54:52:54:0,52,837 +chrX 1079312 . T C, 1602.06 . AS_QUALapprox=|1616|0;AS_VarDP=0|50|0;DP=50;QUALapprox=1616;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1616,149,0,1616,149,1616:0,0,24,26 +chrX 1079313 . A . . END=1079366 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,106,1493 +chrX 1079367 . A C, 1589.06 . AS_QUALapprox=|1603|0;AS_VarDP=0|49|0;DP=51;QUALapprox=1603;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1603,146,0,1603,146,1603:0,0,26,23 +chrX 1079368 . C . . END=1079464 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,101,1518 +chrX 1079465 . G C, 2791.06 . AS_QUALapprox=|2805|0;AS_VarDP=0|64|0;DP=65;QUALapprox=2805;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=64 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,64,0:64:99:0|1:1079465_G_C:2805,193,0,2805,193,2805:1079465:0,0,29,35 +chrX 1079466 . C . . END=1079473 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 1079474 . C G, 2722.06 . AS_QUALapprox=|2736|0;AS_VarDP=0|62|0;DP=63;QUALapprox=2736;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=62 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,62,0:62:99:0|1:1079465_G_C:2736,187,0,2736,187,2736:1079465:0,0,27,35 +chrX 1079475 . C . . END=1079570 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 1079571 . T C, 3133.06 . AS_QUALapprox=|3147|0;AS_VarDP=0|72|0;DP=73;QUALapprox=3147;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;VarDP=72 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,72,0:72:99:0|1:1079571_T_C:3147,217,0,3147,217,3147:1079571:0,0,49,23 +chrX 1079572 . G . . END=1079588 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 1079589 . C T, 3029.06 . AS_QUALapprox=|3043|0;AS_VarDP=0|69|0;DP=70;QUALapprox=3043;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;VarDP=69 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,69,0:69:99:0|1:1079571_T_C:3043,208,0,3043,208,3043:1079571:0,0,46,23 +chrX 1079590 . C . . END=1079850 GT:DP:GQ:MIN_DP:PL 0/0:63:72:63:0,72,1439 +chrX 1079851 . C CT, 617.03 . AS_QUALapprox=|631|0;AS_VarDP=1|33|0;BaseQRankSum=-0.561;DP=51;MQRankSum=0.000;QUALapprox=631;RAW_GT_COUNT=0,0,1;RAW_MQandDP=181600,51;ReadPosRankSum=-1.634;VarDP=34 GT:AD:DP:GQ:PL:SB 1/1:1,33,0:34:80:631,80,0,634,97,652:0,1,17,16 +chrX 1079852 . T . . END=1079870 GT:DP:GQ:MIN_DP:PL 0/0:56:90:56:0,90,1350 +chrX 1079871 . A . . END=1079872 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,981 +chrX 1079873 . A . . END=1080087 GT:DP:GQ:MIN_DP:PL 0/0:52:38:41:0,38,1034 +chrX 1080088 . A . . END=1080088 GT:DP:GQ:MIN_DP:PL 0/0:60:18:60:0,18,1529 +chrX 1080089 . T . . END=1080344 GT:DP:GQ:MIN_DP:PL 0/0:68:67:68:0,67,1532 +chrX 1080345 . A T, 2933.06 . AS_QUALapprox=|2947|0;AS_VarDP=0|68|0;DP=68;QUALapprox=2947;RAW_GT_COUNT=0,0,1;RAW_MQandDP=242800,68;VarDP=68 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,68,0:68:99:0|1:1080345_A_T:2947,205,0,2947,205,2947:1080345:0,0,33,35 +chrX 1080346 . T . . END=1080360 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 1080361 . C T, 2828.06 . AS_QUALapprox=|2842|0;AS_VarDP=0|65|0;DP=66;QUALapprox=2842;RAW_GT_COUNT=0,0,1;RAW_MQandDP=235600,66;VarDP=65 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,65,0:65:99:0|1:1080345_A_T:2842,196,0,2842,196,2842:1080345:0,0,31,34 +chrX 1080362 . T . . END=1080676 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,111,1559 +chrX 1080677 . G A, 1855.06 . AS_QUALapprox=|1869|0;AS_VarDP=0|58|0;DP=60;QUALapprox=1869;RAW_GT_COUNT=0,0,1;RAW_MQandDP=214000,60;VarDP=58 GT:AD:DP:GQ:PL:SB 1/1:0,58,0:58:99:1869,174,0,1869,174,1869:0,0,29,29 +chrX 1080678 . C . . END=1080952 GT:DP:GQ:MIN_DP:PL 0/0:57:96:57:0,96,1643 +chrX 1080953 . C T, 1897.06 . AS_QUALapprox=|1911|0;AS_VarDP=0|58|0;DP=63;QUALapprox=1911;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223342,63;VarDP=58 GT:AD:DP:GQ:PL:SB 1/1:0,58,0:58:99:1911,174,0,1911,174,1911:0,0,31,27 +chrX 1080954 . T . . END=1081099 GT:DP:GQ:MIN_DP:PL 0/0:59:29:54:0,29,1448 +chrX 1081100 . C . . END=1081100 GT:DP:GQ:MIN_DP:PL 0/0:59:9:59:0,9,1494 +chrX 1081101 . A . . END=1081127 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1081128 . C . . END=1081128 GT:DP:GQ:MIN_DP:PL 0/0:54:0:54:0,0,971 +chrX 1081129 . G . . END=1081142 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 1081143 . C . . END=1081143 GT:DP:GQ:MIN_DP:PL 0/0:60:0:60:0,0,873 +chrX 1081144 . A . . END=1081188 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1081189 . C . . END=1081190 GT:DP:GQ:MIN_DP:PL 0/0:65:0:65:0,0,537 +chrX 1081191 . A . . END=1081204 GT:DP:GQ:MIN_DP:PL 0/0:73:99:73:0,120,1800 +chrX 1081205 . T . . END=1081205 GT:DP:GQ:MIN_DP:PL 0/0:68:0:68:0,0,286 +chrX 1081206 . A . . END=1081208 GT:DP:GQ:MIN_DP:PL 0/0:79:99:79:0,120,1800 +chrX 1081209 . T . . END=1081209 GT:DP:GQ:MIN_DP:PL 0/0:66:0:66:0,0,150 +chrX 1081210 . G . . END=1081213 GT:DP:GQ:MIN_DP:PL 0/0:78:99:78:0,120,1800 +chrX 1081214 . A . . END=1081214 GT:DP:GQ:MIN_DP:PL 0/0:70:0:70:0,0,200 +chrX 1081215 . A . . END=1081218 GT:DP:GQ:MIN_DP:PL 0/0:77:99:77:0,120,1800 +chrX 1081219 . A . . END=1081219 GT:DP:GQ:MIN_DP:PL 0/0:66:0:66:0,0,28 +chrX 1081220 . A . . END=1081220 GT:DP:GQ:MIN_DP:PL 0/0:79:99:79:0,120,1800 +chrX 1081221 . G . . END=1081221 GT:DP:GQ:MIN_DP:PL 0/0:65:0:65:0,0,192 +chrX 1081222 . G . . END=1081245 GT:DP:GQ:MIN_DP:PL 0/0:76:99:76:0,120,1800 +chrX 1081246 . G . . END=1081246 GT:DP:GQ:MIN_DP:PL 0/0:58:0:58:0,0,0 +chrX 1081247 . C . . END=1081258 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1081259 . A ACCCTGTCTCT, 3176.03 . AS_QUALapprox=|3190|0;AS_VarDP=0|76|0;DP=79;QUALapprox=3190;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237690,79;VarDP=76 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,76,0:76:99:0|1:1081259_A_ACCCTGTCTCT:3190,228,0,3190,228,3190:1081259:0,0,28,48 +chrX 1081260 . A ACTAAAAATACAAAAATTGGTCAGGTGTGGTGGCTCACACCTGTAATCCCAGAATCATGGGAGGCCGAGGCAGGCGGATCACCTGAAGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAAC, 3176.03 . AS_QUALapprox=|3190|0;AS_VarDP=0|76|0;DP=79;QUALapprox=3190;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237690,79;VarDP=76 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,76,0:76:99:0|1:1081259_A_ACCCTGTCTCT:3190,228,0,3190,228,3190:1081259:0,0,28,48 +chrX 1081261 . C . . END=1081342 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,100,1151 +chrX 1081343 . A G, 1363.06 . AS_QUALapprox=|1377|0;AS_VarDP=0|40|0;DP=45;QUALapprox=1377;RAW_GT_COUNT=0,0,1;RAW_MQandDP=153159,45;VarDP=40 GT:AD:DP:GQ:PL:SB 1/1:0,40,0:40:99:1377,120,0,1377,120,1377:0,0,21,19 +chrX 1081344 . G . . END=1081392 GT:DP:GQ:MIN_DP:PL 0/0:41:39:40:0,39,1111 +chrX 1081393 . A G, 1047.06 . AS_QUALapprox=|1061|0;AS_VarDP=0|34|0;DP=37;QUALapprox=1061;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129416,37;VarDP=34 GT:AD:DP:GQ:PL:SB 1/1:0,34,0:34:99:1061,101,0,1061,101,1061:0,0,27,7 +chrX 1081394 . C . . END=1081435 GT:DP:GQ:MIN_DP:PL 0/0:25:31:22:0,31,695 +chrX 1081436 . C CAAAAAA, 1617.03 . AS_QUALapprox=|1631|0;AS_VarDP=0|39|0;DP=53;QUALapprox=1631;RAW_GT_COUNT=0,0,1;RAW_MQandDP=173625,53;VarDP=39 GT:AD:DP:GQ:PL:SB 1/1:0,39,0:39:99:1631,116,0,1632,117,1633:0,0,21,18 +chrX 1081437 . A . . END=1081459 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,117,1755 +chrX 1081460 . G . . END=1081463 GT:DP:GQ:MIN_DP:PL 0/0:56:0:56:0,0,1175 +chrX 1081464 . A . . END=1081464 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 1081465 . C . . END=1081465 GT:DP:GQ:MIN_DP:PL 0/0:56:0:56:0,0,1458 +chrX 1081466 . T . . END=1081984 GT:DP:GQ:MIN_DP:PL 0/0:68:49:68:0,49,1544 +chrX 1081985 . C T, 1957.06 . AS_QUALapprox=|1971|0;AS_VarDP=0|62|0;DP=65;QUALapprox=1971;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:0,62,0:62:99:1971,185,0,1971,185,1971:0,0,35,27 +chrX 1081986 . C . . END=1082080 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 1082081 . C T, 2121.06 . AS_QUALapprox=|2135|0;AS_VarDP=0|64|0;DP=65;QUALapprox=2135;RAW_GT_COUNT=0,0,1;RAW_MQandDP=233001,65;VarDP=64 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:2135,192,0,2135,192,2135:0,0,30,34 +chrX 1082082 . G . . END=1082260 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1082261 . T A, 2387.06 . AS_QUALapprox=|2401|0;AS_VarDP=0|74|0;DP=74;QUALapprox=2401;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;VarDP=74 GT:AD:DP:GQ:PL:SB 1/1:0,74,0:74:99:2401,222,0,2401,222,2401:0,0,39,35 +chrX 1082262 . G . . END=1083440 GT:DP:GQ:MIN_DP:PL 0/0:50:38:36:0,38,1021 +chrX 1083441 . T . . END=1083441 GT:DP:GQ:MIN_DP:PL 0/0:37:7:37:0,7,987 +chrX 1083442 . C CA, 663.03 . AS_QUALapprox=|677|0;AS_VarDP=0|38|0;DP=54;QUALapprox=677;RAW_GT_COUNT=0,0,1;RAW_MQandDP=192321,54;VarDP=38 GT:AD:DP:GQ:PL:SB 1/1:0,38,0:38:99:677,108,0,677,108,677:0,0,14,24 +chrX 1083443 . A . . END=1083644 GT:DP:GQ:MIN_DP:PL 0/0:63:79:63:0,79,1201 +chrX 1083645 . A . . END=1083645 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,0 +chrX 1083646 . G . . END=1083652 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,102,1142 +chrX 1083653 . G . . END=1083653 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,0 +chrX 1083654 . A . . END=1083657 GT:DP:GQ:MIN_DP:PL 0/0:37:83:37:0,83,1141 +chrX 1083658 . G . . END=1083658 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,0 +chrX 1083659 . T . . END=1083666 GT:DP:GQ:MIN_DP:PL 0/0:35:36:34:0,36,540 +chrX 1083667 . C . . END=1084650 GT:DP:GQ:MIN_DP:PL 0/0:0:0:0:0,0,0 +chrX 1084651 . A . . END=1084651 GT:DP:GQ:MIN_DP:PL 0/0:10:30:10:0,30,338 +chrX 1084652 . C . . END=1084654 GT:DP:GQ:MIN_DP:PL 0/0:12:0:12:0,0,0 +chrX 1084655 . A . . END=1084655 GT:DP:GQ:MIN_DP:PL 0/0:13:39:13:0,39,432 +chrX 1084656 . G . . END=1084661 GT:DP:GQ:MIN_DP:PL 0/0:15:0:15:0,0,0 +chrX 1084662 . T . . END=1084663 GT:DP:GQ:MIN_DP:PL 0/0:21:60:21:0,60,695 +chrX 1084664 . A . . END=1084664 GT:DP:GQ:MIN_DP:PL 0/0:21:0:21:0,0,0 +chrX 1084665 . G . . END=1084665 GT:DP:GQ:MIN_DP:PL 0/0:21:63:21:0,63,730 +chrX 1084666 . A . . END=1084666 GT:DP:GQ:MIN_DP:PL 0/0:22:0:22:0,0,0 +chrX 1084667 . T . . END=1084668 GT:DP:GQ:MIN_DP:PL 0/0:23:66:23:0,66,734 +chrX 1084669 . C . . END=1084670 GT:DP:GQ:MIN_DP:PL 0/0:24:0:24:0,0,0 +chrX 1084671 . T . . END=1084672 GT:DP:GQ:MIN_DP:PL 0/0:24:72:24:0,72,834 +chrX 1084673 . G . . END=1084673 GT:DP:GQ:MIN_DP:PL 0/0:25:0:25:0,0,0 +chrX 1084674 . G . . END=1084676 GT:DP:GQ:MIN_DP:PL 0/0:26:78:26:0,78,884 +chrX 1084677 . A . . END=1084681 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,0 +chrX 1084682 . C . . END=1084683 GT:DP:GQ:MIN_DP:PL 0/0:29:87:29:0,87,978 +chrX 1084684 . A . . END=1084685 GT:DP:GQ:MIN_DP:PL 0/0:29:0:29:0,0,0 +chrX 1084686 . A . . END=1084686 GT:DP:GQ:MIN_DP:PL 0/0:29:87:29:0,87,978 +chrX 1084687 . G . . END=1084690 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,0 +chrX 1084691 . T . . END=1084691 GT:DP:GQ:MIN_DP:PL 0/0:31:93:31:0,93,1048 +chrX 1084692 . A . . END=1084692 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,0 +chrX 1084693 . G . . END=1084697 GT:DP:GQ:MIN_DP:PL 0/0:31:93:31:0,93,1038 +chrX 1084698 . C . . END=1084699 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,0 +chrX 1084700 . T . . END=1084723 GT:DP:GQ:MIN_DP:PL 0/0:38:86:38:0,86,1117 +chrX 1084724 . G . . END=1084724 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,0 +chrX 1084725 . A . . END=1084743 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,111,1475 +chrX 1084744 . A . . END=1084745 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,0 +chrX 1084746 . A . . END=1084897 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 1084898 . T C, 2281.06 . AS_QUALapprox=|2295|0;AS_VarDP=0|52|0;DP=54;QUALapprox=2295;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,52,0:52:99:0|1:1084898_T_C:2295,157,0,2295,157,2295:1084898:0,0,23,29 +chrX 1084899 . T A, 2281.06 . AS_QUALapprox=|2295|0;AS_VarDP=0|52|0;DP=56;QUALapprox=2295;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,52,0:52:99:0|1:1084898_T_C:2295,157,0,2295,157,2295:1084898:0,0,23,29 +chrX 1084900 . A . . END=1085115 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 1085116 . CT C, 2580.03 . AS_QUALapprox=|2594|0;AS_VarDP=0|59|0;DP=67;QUALapprox=2594;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=59 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,59,0:59:99:0|1:1085116_CT_C:2594,178,0,2594,178,2594:1085116:0,0,35,24 +chrX 1085118 . T . . END=1085129 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 1085130 . T C, 2674.06 . AS_QUALapprox=|2688|0;AS_VarDP=0|62|0;DP=63;QUALapprox=2688;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=62 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,62,0:62:99:0|1:1085116_CT_C:2688,187,0,2688,187,2688:1085116:0,0,37,25 +chrX 1085131 . G . . END=1085237 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1085238 . T C, 1727.06 . AS_QUALapprox=|1741|0;AS_VarDP=0|54|0;DP=60;QUALapprox=1741;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:1741,162,0,1741,162,1741:0,0,23,31 +chrX 1085239 . G . . END=1085594 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1085595 . G A, 1558.06 . AS_QUALapprox=|1572|0;AS_VarDP=0|50|0;DP=53;QUALapprox=1572;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1572,149,0,1572,149,1572:0,0,21,29 +chrX 1085596 . A . . END=1085820 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 1085821 . G A, 2114.06 . AS_QUALapprox=|2128|0;AS_VarDP=1|49|0;BaseQRankSum=2.403;DP=52;MQRankSum=-0.266;QUALapprox=2128;RAW_GT_COUNT=0,0,1;RAW_MQandDP=174091,52;ReadPosRankSum=-1.179;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:1,49,0:50:99:0|1:1085821_G_A:2128,141,0,2131,147,2138:1085821:1,0,25,24 +chrX 1085822 . T . . END=1085828 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,107,1599 +chrX 1085829 . A G, 2183.06 . AS_QUALapprox=|2197|0;AS_VarDP=1|51|0;DP=54;MQRankSum=-0.300;QUALapprox=2197;RAW_GT_COUNT=0,0,1;RAW_MQandDP=179455,54;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:1,51,0:52:99:0|1:1085821_G_A:2197,147,0,2200,153,2207:1085821:1,0,24,27 +chrX 1085830 . T . . END=1085880 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 1085881 . T C, 1258.64 . AS_QUALapprox=|1266|0;AS_VarDP=23|47|0;BaseQRankSum=2.810;DP=73;MQRankSum=1.024;QUALapprox=1266;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205977,73;ReadPosRankSum=2.921;VarDP=70 GT:AD:DP:GQ:PL:SB 0/1:23,47,0:70:99:1266,0,378,1333,517,1850:10,13,20,27 +chrX 1085882 . A . . END=1085962 GT:DP:GQ:MIN_DP:PL 0/0:92:99:92:0,120,1800 +chrX 1085963 . C G, 38.64 . AS_QUALapprox=|46|0;AS_VarDP=77|12|0;BaseQRankSum=-1.965;DP=94;MQRankSum=-2.300;QUALapprox=46;RAW_GT_COUNT=0,1,0;RAW_MQandDP=214489,94;ReadPosRankSum=-1.881;VarDP=89 GT:AD:DP:GQ:PL:SB 0/1:77,12,0:89:46:46,0,2079,275,2114,2389:35,42,7,5 +chrX 1085964 . A . . END=1086092 GT:DP:GQ:MIN_DP:PL 0/0:99:99:99:0,120,1800 +chrX 1086093 . G T, 106.64 . AS_QUALapprox=|114|0;AS_VarDP=66|10|0;BaseQRankSum=2.826;DP=77;MQRankSum=-2.715;QUALapprox=114;RAW_GT_COUNT=0,1,0;RAW_MQandDP=159333,77;ReadPosRankSum=-0.738;VarDP=76 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:66,10,0:76:99:0|1:1086093_G_T:114,0,2148,311,2177,2488:1086093:41,25,4,6 +chrX 1086094 . T . . END=1086115 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,120,1800 +chrX 1086116 . G A, 1089.64 . AS_QUALapprox=|1097|0;AS_VarDP=29|31|0;BaseQRankSum=1.155;DP=67;MQRankSum=-2.646;QUALapprox=1097;RAW_GT_COUNT=0,1,0;RAW_MQandDP=139286,67;ReadPosRankSum=-0.022;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,31,0:60:99:0|1:1086116_G_A:1097,0,996,1184,1089,2273:1086116:20,9,13,18 +chrX 1086117 . T . . END=1086120 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1086121 . A G, 1007.64 . AS_QUALapprox=|1015|0;AS_VarDP=28|28|0;BaseQRankSum=-0.136;DP=61;MQRankSum=-2.889;QUALapprox=1015;RAW_GT_COUNT=0,1,0;RAW_MQandDP=125636,61;ReadPosRankSum=-0.247;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,28,0:56:99:0|1:1086116_G_A:1015,0,983,1099,1068,2166:1086116:19,9,11,17 +chrX 1086122 . T . . END=1086148 GT:DP:GQ:MIN_DP:PL 0/0:45:84:45:0,84,1260 +chrX 1086149 . A G, 22.64 . AS_QUALapprox=|30|0;AS_VarDP=32|3|0;BaseQRankSum=0.777;DP=36;MQRankSum=-1.691;QUALapprox=30;RAW_GT_COUNT=0,1,0;RAW_MQandDP=76099,36;ReadPosRankSum=-0.767;VarDP=35 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:32,3,0:35:30:0|1:1086093_G_T:30,0,1314,126,1323,1449:1086093:18,14,1,2 +chrX 1086150 . G . . END=1086175 GT:DP:GQ:MIN_DP:PL 0/0:23:33:18:0,33,495 +chrX 1086176 . C . . END=1086176 GT:DP:GQ:MIN_DP:PL 0/0:18:5:18:0,5,457 +chrX 1086177 . A . . END=1086200 GT:DP:GQ:MIN_DP:PL 0/0:12:22:10:0,22,317 +chrX 1086201 . T . . END=1086201 GT:DP:GQ:MIN_DP:PL 0/0:10:16:10:0,16,289 +chrX 1086202 . T . . END=1086209 GT:DP:GQ:MIN_DP:PL 0/0:10:21:10:0,21,315 +chrX 1086210 . T . . END=1086211 GT:DP:GQ:MIN_DP:PL 0/0:8:18:8:0,18,270 +chrX 1086212 . G . . END=1086231 GT:DP:GQ:MIN_DP:PL 0/0:16:21:9:0,21,315 +chrX 1086232 . A T, 401.64 . AS_QUALapprox=|409|0;AS_VarDP=4|17|0;BaseQRankSum=-0.616;DP=22;MQRankSum=-1.077;QUALapprox=409;RAW_GT_COUNT=0,1,0;RAW_MQandDP=41987,22;ReadPosRankSum=0.224;VarDP=21 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:4,17,0:21:99:0|1:1086232_A_T:409,0,129,421,168,589:1086232:1,3,6,11 +chrX 1086233 . T C, 401.64 . AS_QUALapprox=|409|0;AS_VarDP=4|17|0;BaseQRankSum=-0.616;DP=22;MQRankSum=-1.077;QUALapprox=409;RAW_GT_COUNT=0,1,0;RAW_MQandDP=41987,22;ReadPosRankSum=0.269;VarDP=21 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:4,17,0:21:99:0|1:1086232_A_T:409,0,129,421,168,589:1086232:1,3,6,11 +chrX 1086234 . A . . END=1086257 GT:DP:GQ:MIN_DP:PL 0/0:17:36:14:0,36,491 +chrX 1086258 . C . . END=1086258 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,367 +chrX 1086259 . A . . END=1086443 GT:DP:GQ:MIN_DP:PL 0/0:102:55:102:0,55,912 +chrX 1086444 . A G, 68.64 . AS_QUALapprox=|76|0;AS_VarDP=96|12|0;BaseQRankSum=0.594;DP=112;MQRankSum=-0.116;QUALapprox=76;RAW_GT_COUNT=0,1,0;RAW_MQandDP=276536,112;ReadPosRankSum=1.007;VarDP=108 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:96,12,0:108:76:0|1:1086444_A_G:76,0,3576,364,3611,3976:1086444:46,50,4,8 +chrX 1086445 . G . . END=1086526 GT:DP:GQ:MIN_DP:PL 0/0:96:23:95:0,23,1800 +chrX 1086527 . A T, 401.64 . AS_QUALapprox=|409|0;AS_VarDP=87|18|0;BaseQRankSum=-2.014;DP=109;MQRankSum=-2.455;QUALapprox=409;RAW_GT_COUNT=0,1,0;RAW_MQandDP=200340,109;ReadPosRankSum=0.336;VarDP=105 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:87,18,0:105:99:0|1:1086527_A_T:409,0,3417,670,3471,4141:1086527:42,45,7,11 +chrX 1086528 . T C, 401.64 . AS_QUALapprox=|409|0;AS_VarDP=87|18|0;BaseQRankSum=-1.758;DP=109;MQRankSum=-2.455;QUALapprox=409;RAW_GT_COUNT=0,1,0;RAW_MQandDP=200340,109;ReadPosRankSum=0.611;VarDP=105 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:87,18,0:105:99:0|1:1086527_A_T:409,0,3417,670,3471,4141:1086527:42,45,7,11 +chrX 1086529 . A . . END=1086656 GT:DP:GQ:MIN_DP:PL 0/0:111:99:111:0,120,1800 +chrX 1086657 . G A, 441.64 . AS_QUALapprox=|449|0;AS_VarDP=58|18|0;BaseQRankSum=-0.192;DP=77;MQRankSum=-3.628;QUALapprox=449;RAW_GT_COUNT=0,1,0;RAW_MQandDP=179955,77;ReadPosRankSum=-0.589;VarDP=76 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:58,18,0:76:99:0|1:1086657_G_A:449,0,2149,623,2204,2827:1086657:27,31,3,15 +chrX 1086658 . G . . END=1086682 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 1086683 . T G, 224.64 . AS_QUALapprox=|232|0;AS_VarDP=56|10|0;BaseQRankSum=2.008;DP=67;MQRankSum=-4.720;QUALapprox=232;RAW_GT_COUNT=0,1,0;RAW_MQandDP=186926,67;ReadPosRankSum=-0.480;VarDP=66 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:56,10,0:66:99:0|1:1086657_G_A:232,0,2081,400,2111,2511:1086657:28,28,0,10 +chrX 1086684 . T . . END=1086705 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1086706 . G A, 87.64 . AS_QUALapprox=|95|0;AS_VarDP=56|9|0;BaseQRankSum=0.451;DP=65;MQRankSum=-3.938;QUALapprox=95;RAW_GT_COUNT=0,1,0;RAW_MQandDP=191436,65;ReadPosRankSum=-1.197;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:56,9,0:65:95:95,0,1561,263,1588,1851:21,35,1,8 +chrX 1086707 . T . . END=1086779 GT:DP:GQ:MIN_DP:PL 0/0:53:92:53:0,92,1337 +chrX 1086780 . G A, 1882.06 . AS_QUALapprox=|1896|0;AS_VarDP=0|57|0;DP=59;QUALapprox=1896;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1896,171,0,1896,171,1896:0,0,27,30 +chrX 1086781 . T . . END=1093453 GT:DP:GQ:MIN_DP:PL 0/0:32:22:27:0,22,808 +chrX 1093454 . A G, 2364.06 . AS_QUALapprox=|2378|0;AS_VarDP=1|57|0;BaseQRankSum=-0.580;DP=60;MQRankSum=0.000;QUALapprox=2378;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;ReadPosRankSum=1.460;VarDP=58 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:1,57,0:58:99:0|1:1093454_A_G:2378,129,0,2381,171,2423:1093454:1,0,27,30 +chrX 1093455 . C . . END=1093475 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1093476 . C T, 2455.06 . AS_QUALapprox=|2469|0;AS_VarDP=1|59|0;BaseQRankSum=-0.349;DP=63;MQRankSum=0.000;QUALapprox=2469;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;ReadPosRankSum=0.986;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:1,59,0:60:99:0|1:1093454_A_G:2469,135,0,2472,177,2514:1093454:1,0,28,31 +chrX 1093477 . G . . END=1093540 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1093541 . GA G, 1637.03 . AS_QUALapprox=|1651|0;AS_VarDP=1|61|0;BaseQRankSum=-0.645;DP=73;MQRankSum=0.000;QUALapprox=1651;RAW_GT_COUNT=0,0,1;RAW_MQandDP=260800,73;ReadPosRankSum=-0.699;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:1,61,0:62:99:1651,159,0,1654,183,1678:1,0,33,28 +chrX 1093543 . A . . END=1094543 GT:DP:GQ:MIN_DP:PL 0/0:58:31:48:0,31,1251 +chrX 1094544 . T TCA, 1762.03 . AS_QUALapprox=|1776|0;AS_VarDP=0|50|0;DP=58;QUALapprox=1776;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1776,150,0,1776,150,1777:0,0,23,27 +chrX 1094545 . C . . END=1094591 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 1094592 . G A, 1476.06 . AS_QUALapprox=|1490|0;AS_VarDP=0|44|0;DP=46;QUALapprox=1490;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;VarDP=44 GT:AD:DP:GQ:PL:SB 1/1:0,44,0:44:99:1490,132,0,1490,132,1490:0,0,20,24 +chrX 1094593 . T . . END=1094633 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,114,1459 +chrX 1094634 . T C, 1861.06 . AS_QUALapprox=|1875|0;AS_VarDP=0|54|0;DP=56;QUALapprox=1875;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:1875,162,0,1875,162,1875:0,0,22,32 +chrX 1094635 . A . . END=1094713 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,100,1690 +chrX 1094714 . T C, 1927.06 . AS_QUALapprox=|1941|0;AS_VarDP=0|61|0;DP=62;QUALapprox=1941;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=61 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:1941,182,0,1941,182,1941:0,0,33,28 +chrX 1094715 . C . . END=1095292 GT:DP:GQ:MIN_DP:PL 0/0:56:89:56:0,89,1504 +chrX 1095293 . C T, 1846.06 . AS_QUALapprox=|1860|0;AS_VarDP=0|55|0;DP=57;QUALapprox=1860;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1860,165,0,1860,165,1860:0,0,26,29 +chrX 1095294 . T . . END=1095436 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1095437 . A G, 773.64 . AS_QUALapprox=|781|0;AS_VarDP=30|29|0;BaseQRankSum=-0.728;DP=63;MQRankSum=0.000;QUALapprox=781;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=-0.842;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:30,29,0:59:99:781,0,821,871,908,1779:17,13,14,15 +chrX 1095438 . C . . END=1095594 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,103,1800 +chrX 1095595 . A G, 1915.06 . AS_QUALapprox=|1929|0;AS_VarDP=0|63|0;DP=65;QUALapprox=1929;RAW_GT_COUNT=0,0,1;RAW_MQandDP=232249,65;VarDP=63 GT:AD:DP:GQ:PL:SB 1/1:0,63,0:63:99:1929,188,0,1929,188,1929:0,0,33,30 +chrX 1095596 . T . . END=1095742 GT:DP:GQ:MIN_DP:PL 0/0:53:84:53:0,84,1294 +chrX 1095743 . G A, 1638.06 . AS_QUALapprox=|1652|0;AS_VarDP=0|49|0;DP=52;QUALapprox=1652;RAW_GT_COUNT=0,0,1;RAW_MQandDP=182221,52;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1652,147,0,1652,147,1652:0,0,22,27 +chrX 1095744 . G . . END=1096087 GT:DP:GQ:MIN_DP:PL 0/0:54:86:54:0,86,1240 +chrX 1096088 . G A, 1242.06 . AS_QUALapprox=|1256|0;AS_VarDP=0|39|0;DP=42;QUALapprox=1256;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151200,42;VarDP=39 GT:AD:DP:GQ:PL:SB 1/1:0,39,0:39:99:1256,117,0,1256,117,1256:0,0,21,18 +chrX 1096089 . G . . END=1096290 GT:DP:GQ:MIN_DP:PL 0/0:54:70:54:0,70,1305 +chrX 1096291 . G A, 2071.06 . AS_QUALapprox=|2085|0;AS_VarDP=0|57|0;DP=59;QUALapprox=2085;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:2085,171,0,2085,171,2085:0,0,25,32 +chrX 1096292 . G . . END=1096297 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 1096298 . G A, 602.64 . AS_QUALapprox=|610|0;AS_VarDP=33|23|0;BaseQRankSum=2.140;DP=58;MQRankSum=0.000;QUALapprox=610;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-1.458;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:33,23,0:56:99:610,0,869,709,938,1647:17,16,9,14 +chrX 1096299 . G . . END=1096318 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1096319 . C T, 1001.64 . AS_QUALapprox=|1009|0;AS_VarDP=21|36|0;BaseQRankSum=-0.876;DP=60;MQRankSum=0.000;QUALapprox=1009;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=-0.877;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:21,36,0:57:99:1009,0,523,1072,631,1703:9,12,19,17 +chrX 1096320 . G . . END=1096606 GT:DP:GQ:MIN_DP:PL 0/0:57:77:57:0,77,1528 +chrX 1096607 . C T, 1792.06 . AS_QUALapprox=|1806|0;AS_VarDP=1|56|0;BaseQRankSum=2.317;DP=59;MQRankSum=0.000;QUALapprox=1806;RAW_GT_COUNT=0,0,1;RAW_MQandDP=211300,59;ReadPosRankSum=1.064;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:1,56,0:57:99:1806,161,0,1808,168,1815:0,1,32,24 +chrX 1096608 . T . . END=1096640 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,119,1738 +chrX 1096641 . G A, 680.64 . AS_QUALapprox=|688|0;AS_VarDP=25|27|0;BaseQRankSum=0.193;DP=55;MQRankSum=-0.924;QUALapprox=688;RAW_GT_COUNT=0,1,0;RAW_MQandDP=196900,55;ReadPosRankSum=0.458;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:25,27,0:52:99:688,0,618,762,699,1461:14,11,17,10 +chrX 1096642 . A . . END=1096714 GT:DP:GQ:MIN_DP:PL 0/0:49:91:49:0,91,1395 +chrX 1096715 . A . . END=1096715 GT:DP:GQ:MIN_DP:PL 0/0:51:19:51:0,19,1354 +chrX 1096716 . T . . END=1096899 GT:DP:GQ:MIN_DP:PL 0/0:52:34:51:0,34,1374 +chrX 1096900 . C T, 1946.06 . AS_QUALapprox=|1960|0;AS_VarDP=0|61|0;DP=65;QUALapprox=1960;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=61 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:1960,182,0,1960,182,1960:0,0,28,33 +chrX 1096901 . A . . END=1096982 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1096983 . A G, 1735.06 . AS_QUALapprox=|1749|0;AS_VarDP=0|59|0;DP=62;QUALapprox=1749;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1749,175,0,1749,175,1749:0,0,41,18 +chrX 1096984 . T . . END=1097312 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,112,1553 +chrX 1097313 . A G, 1760.06 . AS_QUALapprox=|1774|0;AS_VarDP=0|57|0;DP=60;QUALapprox=1774;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1774,169,0,1774,169,1774:0,0,26,31 +chrX 1097314 . G . . END=1097635 GT:DP:GQ:MIN_DP:PL 0/0:50:41:50:0,41,998 +chrX 1097636 . A . . END=1097636 GT:DP:GQ:MIN_DP:PL 0/0:64:5:64:0,5,1610 +chrX 1097637 . G . . END=1098078 GT:DP:GQ:MIN_DP:PL 0/0:60:67:60:0,67,1584 +chrX 1098079 . A ATT, 587.60 . AS_QUALapprox=|595|0;AS_VarDP=22|23|0;BaseQRankSum=-0.657;DP=50;MQRankSum=-0.934;QUALapprox=595;RAW_GT_COUNT=0,1,0;RAW_MQandDP=178081,50;ReadPosRankSum=-1.079;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:22,23,0:45:99:595,0,630,662,699,1361:10,12,13,10 +chrX 1098080 . T . . END=1098093 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 1098094 . G . . END=1098095 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1202 +chrX 1098096 . G . . END=1098643 GT:DP:GQ:MIN_DP:PL 0/0:62:87:62:0,87,1301 +chrX 1098644 . C G, 1357.06 . AS_QUALapprox=|1371|0;AS_VarDP=0|42|0;DP=43;QUALapprox=1371;RAW_GT_COUNT=0,0,1;RAW_MQandDP=146802,43;VarDP=42 GT:AD:DP:GQ:PL:SB 1/1:0,42,0:42:99:1371,126,0,1371,126,1371:0,0,24,18 +chrX 1098645 . A . . END=1098713 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,107,1361 +chrX 1098714 . C G, 1455.06 . AS_QUALapprox=|1469|0;AS_VarDP=0|46|0;DP=48;QUALapprox=1469;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165725,48;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1469,138,0,1469,138,1469:0,0,28,18 +chrX 1098715 . C . . END=1098784 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,102,1196 +chrX 1098785 . G A, 1804.06 . AS_QUALapprox=|1818|0;AS_VarDP=0|56|0;DP=63;QUALapprox=1818;RAW_GT_COUNT=0,0,1;RAW_MQandDP=224496,63;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1818,168,0,1818,168,1818:0,0,32,24 +chrX 1098786 . A . . END=1099063 GT:DP:GQ:MIN_DP:PL 0/0:55:56:55:0,56,1417 +chrX 1099064 . TA T, 294.60 . AS_QUALapprox=|302|0;AS_VarDP=23|16|0;BaseQRankSum=0.696;DP=51;MQRankSum=0.000;QUALapprox=302;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=0.659;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:23,16,0:39:99:302,0,481,371,529,900:10,13,6,10 +chrX 1099066 . A . . END=1099284 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,107,1638 +chrX 1099285 . G A, 738.64 . AS_QUALapprox=|746|0;AS_VarDP=32|29|0;BaseQRankSum=1.629;DP=64;MQRankSum=0.000;QUALapprox=746;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=0.405;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:32,29,0:61:99:746,0,713,840,801,1641:21,11,12,17 +chrX 1099286 . G . . END=1099340 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 1099341 . T C, 756.64 . AS_QUALapprox=|764|0;AS_VarDP=21|27|0;BaseQRankSum=0.345;DP=50;MQRankSum=0.000;QUALapprox=764;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=-0.073;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:21,27,0:48:99:764,0,556,827,637,1464:7,14,17,10 +chrX 1099342 . G . . END=1099762 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1099763 . G C, 1075.64 . AS_QUALapprox=|1083|0;AS_VarDP=23|39|0;BaseQRankSum=-0.525;DP=65;MQRankSum=1.880;QUALapprox=1083;RAW_GT_COUNT=0,1,0;RAW_MQandDP=228041,65;ReadPosRankSum=-0.284;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:23,39,0:62:99:1083,0,568,1152,685,1837:9,14,22,17 +chrX 1099764 . G . . END=1099816 GT:DP:GQ:MIN_DP:PL 0/0:56:35:53:0,35,1393 +chrX 1099817 . T . . END=1099817 GT:DP:GQ:MIN_DP:PL 0/0:52:0:52:0,0,1139 +chrX 1099818 . T . . END=1099840 GT:DP:GQ:MIN_DP:PL 0/0:55:46:55:0,46,1278 +chrX 1099841 . T . . END=1099843 GT:DP:GQ:MIN_DP:PL 0/0:55:0:55:0,0,1103 +chrX 1099844 . A . . END=1099856 GT:DP:GQ:MIN_DP:PL 0/0:59:47:59:0,47,1580 +chrX 1099857 . T . . END=1099857 GT:DP:GQ:MIN_DP:PL 0/0:55:0:55:0,0,1162 +chrX 1099858 . G . . END=1099871 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,110,1502 +chrX 1099872 . T . . END=1099872 GT:DP:GQ:MIN_DP:PL 0/0:50:0:50:0,0,1201 +chrX 1099873 . G . . END=1099904 GT:DP:GQ:MIN_DP:PL 0/0:51:28:39:0,28,957 +chrX 1099905 . T . . END=1099906 GT:DP:GQ:MIN_DP:PL 0/0:51:3:51:0,3,1088 +chrX 1099907 . G . . END=1099993 GT:DP:GQ:MIN_DP:PL 0/0:56:27:51:0,27,1124 +chrX 1099994 . T . . END=1099994 GT:DP:GQ:MIN_DP:PL 0/0:62:19:62:0,19,1480 +chrX 1099995 . G . . END=1099999 GT:DP:GQ:MIN_DP:PL 0/0:61:91:61:0,91,1657 +chrX 1100000 . T . . END=1100000 GT:DP:GQ:MIN_DP:PL 0/0:56:0:56:0,0,1260 +chrX 1100001 . G . . END=1100011 GT:DP:GQ:MIN_DP:PL 0/0:56:36:53:0,36,1425 +chrX 1100012 . T . . END=1100012 GT:DP:GQ:MIN_DP:PL 0/0:59:8:59:0,8,1411 +chrX 1100013 . A . . END=1100146 GT:DP:GQ:MIN_DP:PL 0/0:41:30:34:0,30,863 +chrX 1100147 . A G, 422.64 . AS_QUALapprox=|430|0;AS_VarDP=20|17|0;BaseQRankSum=-1.595;DP=39;MQRankSum=0.000;QUALapprox=430;RAW_GT_COUNT=0,1,0;RAW_MQandDP=140400,39;ReadPosRankSum=-1.159;VarDP=37 GT:AD:DP:GQ:PL:SB 0/1:20,17,0:37:99:430,0,602,490,653,1143:14,6,7,10 +chrX 1100148 . G . . END=1100188 GT:DP:GQ:MIN_DP:PL 0/0:38:67:38:0,67,893 +chrX 1100189 . T . . END=1100189 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,986 +chrX 1100190 . G . . END=1100193 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 1100194 . T . . END=1100194 GT:DP:GQ:MIN_DP:PL 0/0:54:0:54:0,0,983 +chrX 1100195 . A . . END=1100197 GT:DP:GQ:MIN_DP:PL 0/0:60:66:60:0,66,1489 +chrX 1100198 . T . . END=1100198 GT:DP:GQ:MIN_DP:PL 0/0:56:0:56:0,0,1291 +chrX 1100199 . G . . END=1100218 GT:DP:GQ:MIN_DP:PL 0/0:56:55:56:0,55,1301 +chrX 1100219 . T . . END=1100219 GT:DP:GQ:MIN_DP:PL 0/0:52:2:52:0,2,1278 +chrX 1100220 . G . . END=1100220 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 1100221 . C . . END=1100221 GT:DP:GQ:MIN_DP:PL 0/0:50:18:50:0,18,1152 +chrX 1100222 . A . . END=1100308 GT:DP:GQ:MIN_DP:PL 0/0:48:27:44:0,27,1040 +chrX 1100309 . C . . END=1100309 GT:DP:GQ:MIN_DP:PL 0/0:37:12:37:0,12,858 +chrX 1100310 . G . . END=1100374 GT:DP:GQ:MIN_DP:PL 0/0:52:41:52:0,41,1170 +chrX 1100375 . T C, 507.64 . AS_QUALapprox=|515|0;AS_VarDP=20|25|0;BaseQRankSum=-1.923;DP=55;MQRankSum=1.163;QUALapprox=515;RAW_GT_COUNT=0,1,0;RAW_MQandDP=195625,55;ReadPosRankSum=1.142;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:20,25,0:45:99:515,0,483,574,555,1130:8,12,15,10 +chrX 1100376 . G . . END=1100493 GT:DP:GQ:MIN_DP:PL 0/0:46:25:36:0,25,769 +chrX 1100494 . A T, 79.64 . AS_QUALapprox=|87|0;AS_VarDP=16|5|0;BaseQRankSum=0.221;DP=24;MQRankSum=0.000;QUALapprox=87;RAW_GT_COUNT=0,1,0;RAW_MQandDP=86400,24;ReadPosRankSum=1.074;VarDP=21 GT:AD:DP:GQ:PL:SB 0/1:16,5,0:21:87:87,0,423,134,438,572:11,5,5,0 +chrX 1100495 . T . . END=1100517 GT:DP:GQ:MIN_DP:PL 0/0:30:72:30:0,72,774 +chrX 1100518 . C . . END=1100518 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,763 +chrX 1100519 . A . . END=1100655 GT:DP:GQ:MIN_DP:PL 0/0:36:29:33:0,29,917 +chrX 1100656 . C CA, 366.60 . AS_QUALapprox=|374|0;AS_VarDP=21|19|0;BaseQRankSum=1.643;DP=53;MQRankSum=0.000;QUALapprox=374;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=-1.179;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:21,19,0:40:99:374,0,429,437,486,923:11,10,9,10 +chrX 1100657 . A . . END=1101356 GT:DP:GQ:MIN_DP:PL 0/0:59:38:48:0,38,1250 +chrX 1101357 . G T, 662.64 . AS_QUALapprox=|670|0;AS_VarDP=21|18|0;BaseQRankSum=-1.059;DP=40;MQRankSum=1.531;QUALapprox=670;RAW_GT_COUNT=0,1,0;RAW_MQandDP=103361,40;ReadPosRankSum=-1.353;VarDP=39 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,18,0:39:99:0|1:1101357_G_T:670,0,814,734,869,1602:1101357:3,18,2,16 +chrX 1101358 . G . . END=1101361 GT:DP:GQ:MIN_DP:PL 0/0:36:90:36:0,90,1350 +chrX 1101362 . A G, 604.64 . AS_QUALapprox=|612|0;AS_VarDP=20|16|0;BaseQRankSum=-2.309;DP=36;MQRankSum=1.387;QUALapprox=612;RAW_GT_COUNT=0,1,0;RAW_MQandDP=90536,36;ReadPosRankSum=-1.354;VarDP=36 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:20,16,0:36:99:0|1:1101357_G_T:612,0,792,672,840,1512:1101357:3,17,2,14 +chrX 1101363 . T . . END=1101387 GT:DP:GQ:MIN_DP:PL 0/0:31:72:31:0,72,988 +chrX 1101388 . G C, 349.64 . AS_QUALapprox=|357|0;AS_VarDP=21|10|0;BaseQRankSum=-1.872;DP=31;MQRankSum=0.387;QUALapprox=357;RAW_GT_COUNT=0,1,0;RAW_MQandDP=68898,31;ReadPosRankSum=-0.682;VarDP=31 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,10,0:31:99:0|1:1101357_G_T:357,0,801,420,831,1251:1101357:5,16,2,8 +chrX 1101389 . T . . END=1101529 GT:DP:GQ:MIN_DP:PL 0/0:25:25:20:0,25,540 +chrX 1101530 . C . . END=1101530 GT:DP:GQ:MIN_DP:PL 0/0:19:8:19:0,8,492 +chrX 1101531 . A . . END=1101561 GT:DP:GQ:MIN_DP:PL 0/0:11:21:9:0,21,203 +chrX 1101562 . A . . END=1101562 GT:DP:GQ:MIN_DP:PL 0/0:7:0:7:0,0,164 +chrX 1101563 . T . . END=1101564 GT:DP:GQ:MIN_DP:PL 0/0:9:24:9:0,24,258 +chrX 1101565 . G . . END=1101565 GT:DP:GQ:MIN_DP:PL 0/0:8:10:8:0,10,229 +chrX 1101566 . A . . END=1101569 GT:DP:GQ:MIN_DP:PL 0/0:10:24:9:0,24,348 +chrX 1101570 . A . . END=1101570 GT:DP:GQ:MIN_DP:PL 0/0:13:0:13:0,0,295 +chrX 1101571 . A . . END=1101586 GT:DP:GQ:MIN_DP:PL 0/0:13:28:13:0,28,417 +chrX 1101587 . A . . END=1101587 GT:DP:GQ:MIN_DP:PL 0/0:12:11:12:0,11,338 +chrX 1101588 . G C, 69.64 . AS_QUALapprox=|77|0;AS_VarDP=6|3|0;BaseQRankSum=0.431;DP=9;MQRankSum=1.981;QUALapprox=77;RAW_GT_COUNT=0,1,0;RAW_MQandDP=20264,9;ReadPosRankSum=-2.260;VarDP=9 GT:AD:DP:GQ:PL:SB 0/1:6,3,0:9:77:77,0,154,95,163,259:3,3,3,0 +chrX 1101589 . T . . END=1101635 GT:DP:GQ:MIN_DP:PL 0/0:13:20:12:0,20,342 +chrX 1101636 . C . . END=1101636 GT:DP:GQ:MIN_DP:PL 0/0:18:19:18:0,19,516 +chrX 1101637 . T . . END=1101654 GT:DP:GQ:MIN_DP:PL 0/0:19:43:19:0,43,585 +chrX 1101655 . A . . END=1101655 GT:DP:GQ:MIN_DP:PL 0/0:23:19:23:0,19,620 +chrX 1101656 . T . . END=1101750 GT:DP:GQ:MIN_DP:PL 0/0:36:54:36:0,54,800 +chrX 1101751 . C . . END=1101751 GT:DP:GQ:MIN_DP:PL 0/0:41:14:41:0,14,1117 +chrX 1101752 . C . . END=1101792 GT:DP:GQ:MIN_DP:PL 0/0:41:38:40:0,38,1004 +chrX 1101793 . T . . END=1101793 GT:DP:GQ:MIN_DP:PL 0/0:46:16:46:0,16,1074 +chrX 1101794 . T . . END=1101892 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,105,1422 +chrX 1101893 . C T, 910.64 . AS_QUALapprox=|918|0;AS_VarDP=21|27|0;BaseQRankSum=-2.438;DP=48;MQRankSum=-1.137;QUALapprox=918;RAW_GT_COUNT=0,1,0;RAW_MQandDP=159088,48;ReadPosRankSum=-0.873;VarDP=48 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,27,0:48:99:0|1:1101893_C_T:918,0,759,981,840,1822:1101893:12,9,15,12 +chrX 1101894 . C . . END=1101917 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,119,1468 +chrX 1101918 . G A, 861.64 . AS_QUALapprox=|869|0;AS_VarDP=23|25|0;BaseQRankSum=-1.265;DP=48;MQRankSum=-0.523;QUALapprox=869;RAW_GT_COUNT=0,1,0;RAW_MQandDP=155893,48;ReadPosRankSum=0.547;VarDP=48 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,25,0:48:99:0|1:1101893_C_T:869,0,819,938,894,1832:1101893:14,9,14,11 +chrX 1101919 . T . . END=1102085 GT:DP:GQ:MIN_DP:PL 0/0:22:22:17:0,22,490 +chrX 1102086 . A . . END=1102086 GT:DP:GQ:MIN_DP:PL 0/0:24:0:24:0,0,566 +chrX 1102087 . G . . END=1102106 GT:DP:GQ:MIN_DP:PL 0/0:31:69:31:0,69,749 +chrX 1102107 . G . . END=1102107 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,744 +chrX 1102108 . C . . END=1102110 GT:DP:GQ:MIN_DP:PL 0/0:32:84:32:0,84,1260 +chrX 1102111 . C . . END=1102111 GT:DP:GQ:MIN_DP:PL 0/0:25:6:25:0,6,640 +chrX 1102112 . C . . END=1102113 GT:DP:GQ:MIN_DP:PL 0/0:29:58:29:0,58,819 +chrX 1102114 . G . . END=1102114 GT:DP:GQ:MIN_DP:PL 0/0:26:9:26:0,9,685 +chrX 1102115 . G . . END=1102158 GT:DP:GQ:MIN_DP:PL 0/0:38:59:38:0,59,812 +chrX 1102159 . A . . END=1102159 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,853 +chrX 1102160 . G . . END=1102197 GT:DP:GQ:MIN_DP:PL 0/0:36:36:35:0,36,967 +chrX 1102198 . G . . END=1102198 GT:DP:GQ:MIN_DP:PL 0/0:37:17:37:0,17,1018 +chrX 1102199 . T . . END=1102365 GT:DP:GQ:MIN_DP:PL 0/0:41:27:32:0,27,1051 +chrX 1102366 . G . . END=1102366 GT:DP:GQ:MIN_DP:PL 0/0:32:3:32:0,3,1215 +chrX 1102367 . G . . END=1102373 GT:DP:GQ:MIN_DP:PL 0/0:29:75:29:0,75,1125 +chrX 1102374 . T C, 0.40 . AS_QUALapprox=|6|0;AS_VarDP=26|2|0;BaseQRankSum=-2.810;DP=29;MQRankSum=0.499;QUALapprox=6;RAW_GT_COUNT=0,1,0;RAW_MQandDP=98370,29;ReadPosRankSum=0.046;VarDP=28 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,2,0:28:6:0|1:1102352_C_A:6,0,1065,84,1071,1155:1102352:17,9,1,1 +chrX 1102375 . A . . END=1102386 GT:DP:GQ:MIN_DP:PL 0/0:41:81:41:0,81,1201 +chrX 1102387 . A . . END=1102387 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,346 +chrX 1102388 . C . . END=1102391 GT:DP:GQ:MIN_DP:PL 0/0:37:69:37:0,69,1072 +chrX 1102392 . T . . END=1102392 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,321 +chrX 1102393 . C . . END=1102400 GT:DP:GQ:MIN_DP:PL 0/0:36:75:36:0,75,1066 +chrX 1102401 . G . . END=1102402 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,386 +chrX 1102403 . T . . END=1102405 GT:DP:GQ:MIN_DP:PL 0/0:32:69:32:0,69,1035 +chrX 1102406 . A . . END=1102406 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,409 +chrX 1102407 . G . . END=1102407 GT:DP:GQ:MIN_DP:PL 0/0:33:72:33:0,72,1080 +chrX 1102408 . C . . END=1102409 GT:DP:GQ:MIN_DP:PL 0/0:29:0:29:0,0,657 +chrX 1102410 . G . . END=1102410 GT:DP:GQ:MIN_DP:PL 0/0:31:75:31:0,75,1125 +chrX 1102411 . A . . END=1102412 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,665 +chrX 1102413 . C . . END=1102413 GT:DP:GQ:MIN_DP:PL 0/0:31:81:31:0,81,1215 +chrX 1102414 . T . . END=1102414 GT:DP:GQ:MIN_DP:PL 0/0:29:0:29:0,0,640 +chrX 1102415 . A . . END=1102426 GT:DP:GQ:MIN_DP:PL 0/0:30:20:29:0,20,813 +chrX 1102427 . A . . END=1102427 GT:DP:GQ:MIN_DP:PL 0/0:26:0:26:0,0,389 +chrX 1102428 . C . . END=1102438 GT:DP:GQ:MIN_DP:PL 0/0:28:49:28:0,49,828 +chrX 1102439 . A . . END=1102439 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,657 +chrX 1102440 . G . . END=1102444 GT:DP:GQ:MIN_DP:PL 0/0:31:63:31:0,63,945 +chrX 1102445 . C . . END=1102445 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,645 +chrX 1102446 . A . . END=1102576 GT:DP:GQ:MIN_DP:PL 0/0:34:22:24:0,22,634 +chrX 1102577 . A . . END=1102577 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,1044 +chrX 1102578 . G . . END=1102591 GT:DP:GQ:MIN_DP:PL 0/0:41:30:38:0,30,1093 +chrX 1102592 . A . . END=1102592 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,899 +chrX 1102593 . C . . END=1102605 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 1102606 . A . . END=1102606 GT:DP:GQ:MIN_DP:PL 0/0:52:0:52:0,0,934 +chrX 1102607 . G . . END=1102626 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,116,1517 +chrX 1102627 . A . . END=1102627 GT:DP:GQ:MIN_DP:PL 0/0:50:0:50:0,0,545 +chrX 1102628 . C . . END=1102631 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 1102632 . T . . END=1102632 GT:DP:GQ:MIN_DP:PL 0/0:54:0:54:0,0,486 +chrX 1102633 . C . . END=1103445 GT:DP:GQ:MIN_DP:PL 0/0:70:25:66:0,25,1452 +chrX 1103446 . A G, 1062.64 . AS_QUALapprox=|1070|0;AS_VarDP=21|39|0;BaseQRankSum=-1.847;DP=64;MQRankSum=0.000;QUALapprox=1070;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=-0.721;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:21,39,0:60:99:1070,0,528,1133,644,1777:9,12,17,22 +chrX 1103447 . A . . END=1103649 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,106,1453 +chrX 1103650 . C T, 1090.64 . AS_QUALapprox=|1098|0;AS_VarDP=17|28|0;BaseQRankSum=-0.258;DP=46;MQRankSum=0.000;QUALapprox=1098;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=-1.171;VarDP=45 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:17,28,0:45:99:0|1:1103650_C_T:1098,0,630,1149,714,1863:1103650:7,10,14,14 +chrX 1103651 . C . . END=1103655 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,120,1800 +chrX 1103656 . T C, 1031.64 . AS_QUALapprox=|1039|0;AS_VarDP=17|26|0;BaseQRankSum=-0.659;DP=44;MQRankSum=0.000;QUALapprox=1039;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=-0.497;VarDP=43 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:17,26,0:43:99:0|1:1103650_C_T:1039,0,636,1090,714,1804:1103650:7,10,13,13 +chrX 1103657 . G . . END=1103775 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 1103776 . A C, 2093.06 . AS_QUALapprox=|2107|0;AS_VarDP=0|66|0;DP=68;QUALapprox=2107;RAW_GT_COUNT=0,0,1;RAW_MQandDP=242225,68;VarDP=66 GT:AD:DP:GQ:PL:SB 1/1:0,66,0:66:99:2107,198,0,2107,198,2107:0,0,38,28 +chrX 1103777 . C . . END=1104696 GT:DP:GQ:MIN_DP:PL 0/0:59:65:59:0,65,1534 +chrX 1104697 . A G, 590.64 . AS_QUALapprox=|598|0;AS_VarDP=34|23|0;BaseQRankSum=0.987;DP=58;MQRankSum=0.000;QUALapprox=598;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=1.400;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:34,23,0:57:99:598,0,929,700,998,1699:17,17,13,10 +chrX 1104698 . G . . END=1104815 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 1104816 . TATAA T, 782.60 . AS_QUALapprox=|790|0;AS_VarDP=39|23|0;BaseQRankSum=-1.489;DP=69;MQRankSum=0.000;QUALapprox=790;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=-0.646;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:39,23,0:62:99:790,0,1516,907,1586,2493:17,22,14,9 +chrX 1104821 . A . . END=1105098 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 1105099 . A G, 1001.64 . AS_QUALapprox=|1009|0;AS_VarDP=34|38|0;BaseQRankSum=-1.217;DP=77;MQRankSum=0.000;QUALapprox=1009;RAW_GT_COUNT=0,1,0;RAW_MQandDP=277200,77;ReadPosRankSum=0.017;VarDP=72 GT:AD:DP:GQ:PL:SB 0/1:34,38,0:72:99:1009,0,909,1111,1024,2134:16,18,21,17 +chrX 1105100 . G . . END=1105263 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 1105264 . A C, 734.64 . AS_QUALapprox=|742|0;AS_VarDP=27|28|0;BaseQRankSum=0.013;DP=57;MQRankSum=0.000;QUALapprox=742;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-0.969;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:27,28,0:55:99:742,0,724,823,807,1631:14,13,11,17 +chrX 1105265 . T . . END=1105517 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,108,1534 +chrX 1105518 . G A, 791.64 . AS_QUALapprox=|799|0;AS_VarDP=22|28|0;BaseQRankSum=-0.356;DP=51;MQRankSum=0.000;QUALapprox=799;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-0.675;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:22,28,0:50:99:799,0,604,865,689,1554:16,6,16,12 +chrX 1105519 . A . . END=1105689 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,114,1385 +chrX 1105690 . C G, 1966.06 . AS_QUALapprox=|1980|0;AS_VarDP=0|60|0;DP=65;QUALapprox=1980;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:1980,180,0,1980,180,1980:0,0,26,34 +chrX 1105691 . T . . END=1106000 GT:DP:GQ:MIN_DP:PL 0/0:48:73:48:0,73,1103 +chrX 1106001 . T C, 717.64 . AS_QUALapprox=|725|0;AS_VarDP=27|26|0;BaseQRankSum=1.764;DP=54;MQRankSum=0.000;QUALapprox=725;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=-0.756;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,26,0:53:99:0|1:1106001_T_C:725,0,709,806,787,1593:1106001:12,15,12,14 +chrX 1106002 . T . . END=1106049 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,111,1405 +chrX 1106050 . G C, 2137.06 . AS_QUALapprox=|2151|0;AS_VarDP=0|49|0;DP=49;QUALapprox=2151;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,49,0:49:99:0|1:1106001_T_C:2151,147,0,2151,147,2151:1106001:0,0,20,29 +chrX 1106051 . A . . END=1106056 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,117,1755 +chrX 1106057 . AGAG A, 2089.03 . AS_QUALapprox=|2103|0;AS_VarDP=0|48|0;DP=48;QUALapprox=2103;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=48 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,48,0:48:99:0|1:1106001_T_C:2103,144,0,2103,144,2103:1106001:0,0,20,28 +chrX 1106061 . G . . END=1106362 GT:DP:GQ:MIN_DP:PL 0/0:48:39:41:0,39,1036 +chrX 1106363 . C . . END=1106363 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,634 +chrX 1106364 . A . . END=1106375 GT:DP:GQ:MIN_DP:PL 0/0:32:27:31:0,27,777 +chrX 1106376 . T . . END=1106376 GT:DP:GQ:MIN_DP:PL 0/0:28:5:28:0,5,625 +chrX 1106377 . G . . END=1106378 GT:DP:GQ:MIN_DP:PL 0/0:31:78:31:0,78,888 +chrX 1106379 . A AAG, 1184.03 . AS_QUALapprox=|1198|0;AS_VarDP=1|31|0;BaseQRankSum=-0.860;DP=35;MQRankSum=-0.129;QUALapprox=1198;RAW_GT_COUNT=0,0,1;RAW_MQandDP=121860,35;ReadPosRankSum=-0.650;VarDP=32 GT:AD:DP:GQ:PL:SB 1/1:1,31,0:32:55:1198,55,0,1201,93,1239:1,0,16,15 +chrX 1106380 . A . . END=1106381 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,102,1530 +chrX 1106382 . A . . END=1106382 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,808 +chrX 1106383 . G . . END=1106386 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,99,1485 +chrX 1106387 . A . . END=1106388 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,852 +chrX 1106389 . G . . END=1106392 GT:DP:GQ:MIN_DP:PL 0/0:43:90:43:0,90,1350 +chrX 1106393 . G . . END=1106393 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,947 +chrX 1106394 . A . . END=1106395 GT:DP:GQ:MIN_DP:PL 0/0:43:90:43:0,90,1350 +chrX 1106396 . A . . END=1106396 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,992 +chrX 1106397 . G . . END=1106397 GT:DP:GQ:MIN_DP:PL 0/0:43:96:43:0,96,1440 +chrX 1106398 . G . . END=1106401 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,897 +chrX 1106402 . G . . END=1106425 GT:DP:GQ:MIN_DP:PL 0/0:31:58:31:0,58,868 +chrX 1106426 . T . . END=1106426 GT:DP:GQ:MIN_DP:PL 0/0:28:16:28:0,16,675 +chrX 1106427 . A . . END=1106506 GT:DP:GQ:MIN_DP:PL 0/0:35:44:35:0,44,649 +chrX 1106507 . G A, 491.64 . AS_QUALapprox=|499|0;AS_VarDP=13|21|0;BaseQRankSum=-1.123;DP=35;MQRankSum=0.000;QUALapprox=499;RAW_GT_COUNT=0,1,0;RAW_MQandDP=126000,35;ReadPosRankSum=-0.904;VarDP=34 GT:AD:DP:GQ:PL:SB 0/1:13,21,0:34:99:499,0,316,537,378,915:8,5,12,9 +chrX 1106508 . A . . END=1106647 GT:DP:GQ:MIN_DP:PL 0/0:39:32:32:0,32,834 +chrX 1106648 . G . . END=1106648 GT:DP:GQ:MIN_DP:PL 0/0:43:10:43:0,10,1157 +chrX 1106649 . G . . END=1106660 GT:DP:GQ:MIN_DP:PL 0/0:48:68:48:0,68,1319 +chrX 1106661 . C . . END=1106661 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,815 +chrX 1106662 . A . . END=1106683 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,106,1423 +chrX 1106684 . T . . END=1106684 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,1060 +chrX 1106685 . A . . END=1106848 GT:DP:GQ:MIN_DP:PL 0/0:57:95:57:0,95,1328 +chrX 1106849 . T . . END=1106849 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,910 +chrX 1106850 . A . . END=1106915 GT:DP:GQ:MIN_DP:PL 0/0:48:43:48:0,43,1043 +chrX 1106916 . A G,T, 1261.06 . AS_QUALapprox=|78|1275|0;AS_VarDP=1|6|40|0;BaseQRankSum=1.189;DP=52;MQRankSum=0.000;QUALapprox=1275;RAW_GT_COUNT=0,0,1;RAW_MQandDP=186516,52;ReadPosRankSum=0.664;VarDP=47 GT:AD:DP:GQ:PL:SB 2/2:1,6,40,0:47:48:1275,1206,1197,113,48,0,1277,1213,120,1285:1,0,23,23 +chrX 1106917 . G . . END=1106971 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,111,1425 +chrX 1106972 . G A, 452.64 . AS_QUALapprox=|460|0;AS_VarDP=32|19|0;BaseQRankSum=0.157;DP=53;MQRankSum=0.000;QUALapprox=460;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=0.380;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:32,19,0:51:99:460,0,850,554,906,1460:17,15,10,9 +chrX 1106973 . A . . END=1109462 GT:DP:GQ:MIN_DP:PL 0/0:57:63:57:0,63,1190 +chrX 1109463 . C CAAGA, 726.60 . AS_QUALapprox=|734|0;AS_VarDP=14|21|0;BaseQRankSum=0.422;DP=47;MQRankSum=0.000;QUALapprox=734;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=0.404;VarDP=35 GT:AD:DP:GQ:PL:SB 0/1:14,21,0:35:99:734,0,461,777,525,1301:11,3,15,6 +chrX 1109464 . A . . END=1109476 GT:DP:GQ:MIN_DP:PL 0/0:43:63:43:0,63,945 +chrX 1109477 . G . . END=1109477 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,556 +chrX 1109478 . G . . END=1109503 GT:DP:GQ:MIN_DP:PL 0/0:38:37:37:0,37,945 +chrX 1109504 . G . . END=1109504 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,795 +chrX 1109505 . G . . END=1110404 GT:DP:GQ:MIN_DP:PL 0/0:64:37:56:0,37,874 +chrX 1110405 . G . . END=1110405 GT:DP:GQ:MIN_DP:PL 0/0:65:0:65:0,0,1602 +chrX 1110406 . T . . END=1110413 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 1110414 . C . . END=1110420 GT:DP:GQ:MIN_DP:PL 0/0:72:0:72:0,0,1627 +chrX 1110421 . G . . END=1110421 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,120,1800 +chrX 1110422 . T . . END=1110422 GT:DP:GQ:MIN_DP:PL 0/0:72:0:72:0,0,1775 +chrX 1110423 . G . . END=1110426 GT:DP:GQ:MIN_DP:PL 0/0:73:99:73:0,120,1800 +chrX 1110427 . A . . END=1110427 GT:DP:GQ:MIN_DP:PL 0/0:74:0:74:0,0,1557 +chrX 1110428 . T . . END=1110428 GT:DP:GQ:MIN_DP:PL 0/0:74:99:74:0,120,1800 +chrX 1110429 . G . . END=1110431 GT:DP:GQ:MIN_DP:PL 0/0:74:0:74:0,0,1314 +chrX 1110432 . T . . END=1110432 GT:DP:GQ:MIN_DP:PL 0/0:79:99:79:0,120,1800 +chrX 1110433 . C . . END=1110433 GT:DP:GQ:MIN_DP:PL 0/0:75:0:75:0,0,1433 +chrX 1110434 . T . . END=1110439 GT:DP:GQ:MIN_DP:PL 0/0:80:99:80:0,120,1800 +chrX 1110440 . C . . END=1110440 GT:DP:GQ:MIN_DP:PL 0/0:71:0:71:0,0,1254 +chrX 1110441 . A . . END=1110442 GT:DP:GQ:MIN_DP:PL 0/0:81:99:81:0,120,1800 +chrX 1110443 . A . . END=1110443 GT:DP:GQ:MIN_DP:PL 0/0:77:0:77:0,0,1212 +chrX 1110444 . T . . END=1110445 GT:DP:GQ:MIN_DP:PL 0/0:85:99:85:0,120,1800 +chrX 1110446 . T . . END=1110446 GT:DP:GQ:MIN_DP:PL 0/0:81:0:81:0,0,1642 +chrX 1110447 . G . . END=1110447 GT:DP:GQ:MIN_DP:PL 0/0:86:99:86:0,120,1800 +chrX 1110448 . T . . END=1110449 GT:DP:GQ:MIN_DP:PL 0/0:81:0:81:0,0,1433 +chrX 1110450 . T . . END=1110450 GT:DP:GQ:MIN_DP:PL 0/0:87:99:87:0,120,1800 +chrX 1110451 . G . . END=1110452 GT:DP:GQ:MIN_DP:PL 0/0:79:0:79:0,0,1069 +chrX 1110453 . G . . END=1110454 GT:DP:GQ:MIN_DP:PL 0/0:90:99:90:0,120,1800 +chrX 1110455 . C . . END=1110455 GT:DP:GQ:MIN_DP:PL 0/0:83:0:83:0,0,1035 +chrX 1110456 . T . . END=1110456 GT:DP:GQ:MIN_DP:PL 0/0:92:99:92:0,120,1800 +chrX 1110457 . C . . END=1110457 GT:DP:GQ:MIN_DP:PL 0/0:81:0:81:0,0,1321 +chrX 1110458 . T . . END=1110458 GT:DP:GQ:MIN_DP:PL 0/0:92:99:92:0,120,1800 +chrX 1110459 . G . . END=1110459 GT:DP:GQ:MIN_DP:PL 0/0:84:0:84:0,0,1638 +chrX 1110460 . T . . END=1110461 GT:DP:GQ:MIN_DP:PL 0/0:93:99:93:0,120,1800 +chrX 1110462 . T . . END=1110463 GT:DP:GQ:MIN_DP:PL 0/0:86:0:86:0,0,1758 +chrX 1110464 . T . . END=1110464 GT:DP:GQ:MIN_DP:PL 0/0:96:99:96:0,120,1800 +chrX 1110465 . G . . END=1110467 GT:DP:GQ:MIN_DP:PL 0/0:79:0:79:0,0,1206 +chrX 1110468 . T . . END=1110468 GT:DP:GQ:MIN_DP:PL 0/0:95:99:95:0,120,1800 +chrX 1110469 . G . . END=1110471 GT:DP:GQ:MIN_DP:PL 0/0:83:0:83:0,0,1240 +chrX 1110472 . T . . END=1110473 GT:DP:GQ:MIN_DP:PL 0/0:99:99:99:0,120,1800 +chrX 1110474 . C . . END=1110477 GT:DP:GQ:MIN_DP:PL 0/0:83:0:83:0,0,869 +chrX 1110478 . T . . END=1110479 GT:DP:GQ:MIN_DP:PL 0/0:106:99:106:0,120,1800 +chrX 1110480 . T . . END=1110481 GT:DP:GQ:MIN_DP:PL 0/0:86:0:86:0,0,885 +chrX 1110482 . T . . END=1110483 GT:DP:GQ:MIN_DP:PL 0/0:106:99:106:0,120,1800 +chrX 1110484 . T . . END=1110487 GT:DP:GQ:MIN_DP:PL 0/0:85:0:85:0,0,840 +chrX 1110488 . T . . END=1110488 GT:DP:GQ:MIN_DP:PL 0/0:106:99:106:0,120,1800 +chrX 1110489 . A . . END=1110489 GT:DP:GQ:MIN_DP:PL 0/0:84:0:84:0,0,574 +chrX 1110490 . T . . END=1110491 GT:DP:GQ:MIN_DP:PL 0/0:101:99:101:0,120,1800 +chrX 1110492 . C . . END=1110494 GT:DP:GQ:MIN_DP:PL 0/0:80:0:80:0,0,501 +chrX 1110495 . G . . END=1110499 GT:DP:GQ:MIN_DP:PL 0/0:108:99:108:0,120,1800 +chrX 1110500 . T . . END=1110503 GT:DP:GQ:MIN_DP:PL 0/0:85:0:85:0,0,496 +chrX 1110504 . T . . END=1110505 GT:DP:GQ:MIN_DP:PL 0/0:110:99:110:0,120,1800 +chrX 1110506 . T . . END=1110507 GT:DP:GQ:MIN_DP:PL 0/0:82:0:82:0,0,355 +chrX 1110508 . T . . END=1110508 GT:DP:GQ:MIN_DP:PL 0/0:109:99:109:0,120,1800 +chrX 1110509 . A ATGCATGCTAGTGTGTGTGTATGTAGGCATCTGTGTGTATGCATGCTAGTATATGTGAACACACGTGTATGTGCATGAATACTAGGGTGTTTATGTATGTGTGTATGTAGGCGTCTGTGTGTATGCATCTGTATCTGTGCATGCATGCTAGTGTGTTTGTGTGCACATGGGTG, 3433.03 . AS_QUALapprox=|3447|0;AS_VarDP=10|81|0;BaseQRankSum=0.160;DP=92;MQRankSum=-1.021;QUALapprox=3447;RAW_GT_COUNT=0,0,1;RAW_MQandDP=317986,92;ReadPosRankSum=0.355;VarDP=91 GT:AD:DP:GQ:PL:SB 1/1:10,81,0:91:99:3447,223,0,3460,243,3479:3,7,42,39 +chrX 1110510 . T . . END=1110566 GT:DP:GQ:MIN_DP:PL 0/0:46:95:46:0,95,1240 +chrX 1110567 . T . . END=1110582 GT:DP:GQ:MIN_DP:PL 0/0:82:0:82:0,0,1191 +chrX 1110583 . A . . END=1110583 GT:DP:GQ:MIN_DP:PL 0/0:91:99:91:0,120,1800 +chrX 1110584 . G . . END=1110590 GT:DP:GQ:MIN_DP:PL 0/0:77:0:77:0,0,1330 +chrX 1110591 . T . . END=1110591 GT:DP:GQ:MIN_DP:PL 0/0:87:99:87:0,120,1800 +chrX 1110592 . G . . END=1110598 GT:DP:GQ:MIN_DP:PL 0/0:75:0:75:0,0,1360 +chrX 1110599 . T . . END=1110599 GT:DP:GQ:MIN_DP:PL 0/0:80:99:80:0,120,1800 +chrX 1110600 . G . . END=1110617 GT:DP:GQ:MIN_DP:PL 0/0:76:0:76:0,0,1469 +chrX 1110618 . G . . END=1110618 GT:DP:GQ:MIN_DP:PL 0/0:77:99:77:0,120,1800 +chrX 1110619 . C . . END=1110620 GT:DP:GQ:MIN_DP:PL 0/0:70:0:70:0,0,1781 +chrX 1110621 . T . . END=1110621 GT:DP:GQ:MIN_DP:PL 0/0:75:27:75:0,27,2119 +chrX 1110622 . C . . END=1110622 GT:DP:GQ:MIN_DP:PL 0/0:75:0:75:0,0,1940 +chrX 1110623 . T . . END=1110627 GT:DP:GQ:MIN_DP:PL 0/0:75:20:73:0,20,2064 +chrX 1110628 . G . . END=1110628 GT:DP:GQ:MIN_DP:PL 0/0:73:0:73:0,0,2011 +chrX 1110629 . T . . END=1110631 GT:DP:GQ:MIN_DP:PL 0/0:70:23:67:0,23,1811 +chrX 1110632 . A . . END=1110632 GT:DP:GQ:MIN_DP:PL 0/0:67:3:67:0,3,1821 +chrX 1110633 . T . . END=1110781 GT:DP:GQ:MIN_DP:PL 0/0:71:37:69:0,37,1800 +chrX 1110782 . C . . END=1110782 GT:DP:GQ:MIN_DP:PL 0/0:74:9:74:0,9,1925 +chrX 1110783 . C . . END=1110786 GT:DP:GQ:MIN_DP:PL 0/0:76:29:74:0,29,1800 +chrX 1110787 . A . . END=1110787 GT:DP:GQ:MIN_DP:PL 0/0:80:0:80:0,0,1913 +chrX 1110788 . A . . END=1110788 GT:DP:GQ:MIN_DP:PL 0/0:77:99:77:0,120,1800 +chrX 1110789 . A . . END=1110789 GT:DP:GQ:MIN_DP:PL 0/0:80:0:80:0,0,1965 +chrX 1110790 . G . . END=1110798 GT:DP:GQ:MIN_DP:PL 0/0:86:64:86:0,64,1800 +chrX 1110799 . C . . END=1110807 GT:DP:GQ:MIN_DP:PL 0/0:88:0:88:0,0,1960 +chrX 1110808 . G . . END=1110809 GT:DP:GQ:MIN_DP:PL 0/0:91:99:91:0,120,1800 +chrX 1110810 . G . . END=1110810 GT:DP:GQ:MIN_DP:PL 0/0:92:0:92:0,0,2314 +chrX 1110811 . T . . END=1110811 GT:DP:GQ:MIN_DP:PL 0/0:93:99:93:0,120,1800 +chrX 1110812 . G . . END=1110812 GT:DP:GQ:MIN_DP:PL 0/0:92:0:92:0,0,2393 +chrX 1110813 . T . . END=1110814 GT:DP:GQ:MIN_DP:PL 0/0:94:99:94:0,120,1800 +chrX 1110815 . C . . END=1110817 GT:DP:GQ:MIN_DP:PL 0/0:88:0:88:0,0,1895 +chrX 1110818 . A . . END=1110818 GT:DP:GQ:MIN_DP:PL 0/0:88:99:88:0,120,1800 +chrX 1110819 . T . . END=1110820 GT:DP:GQ:MIN_DP:PL 0/0:92:0:92:0,0,2327 +chrX 1110821 . C . . END=1110821 GT:DP:GQ:MIN_DP:PL 0/0:90:99:90:0,120,1800 +chrX 1110822 . G . . END=1110823 GT:DP:GQ:MIN_DP:PL 0/0:93:0:93:0,0,2151 +chrX 1110824 . G . . END=1110827 GT:DP:GQ:MIN_DP:PL 0/0:95:99:95:0,120,1800 +chrX 1110828 . G . . END=1110828 GT:DP:GQ:MIN_DP:PL 0/0:94:0:94:0,0,2404 +chrX 1110829 . T . . END=1110829 GT:DP:GQ:MIN_DP:PL 0/0:91:99:91:0,120,1800 +chrX 1110830 . T . . END=1110830 GT:DP:GQ:MIN_DP:PL 0/0:92:0:92:0,0,1915 +chrX 1110831 . T . . END=1110832 GT:DP:GQ:MIN_DP:PL 0/0:92:99:92:0,120,1800 +chrX 1110833 . T . . END=1110834 GT:DP:GQ:MIN_DP:PL 0/0:91:0:91:0,0,2243 +chrX 1110835 . T . . END=1110836 GT:DP:GQ:MIN_DP:PL 0/0:89:99:89:0,120,1800 +chrX 1110837 . C . . END=1110837 GT:DP:GQ:MIN_DP:PL 0/0:87:0:87:0,0,1952 +chrX 1110838 . A . . END=1110839 GT:DP:GQ:MIN_DP:PL 0/0:91:99:91:0,120,1800 +chrX 1110840 . G . . END=1110840 GT:DP:GQ:MIN_DP:PL 0/0:90:0:90:0,0,2193 +chrX 1110841 . C . . END=1110841 GT:DP:GQ:MIN_DP:PL 0/0:91:99:91:0,120,1800 +chrX 1110842 . A . . END=1110843 GT:DP:GQ:MIN_DP:PL 0/0:94:0:94:0,0,2086 +chrX 1110844 . G . . END=1110844 GT:DP:GQ:MIN_DP:PL 0/0:93:99:93:0,120,1800 +chrX 1110845 . C . . END=1110847 GT:DP:GQ:MIN_DP:PL 0/0:93:0:93:0,0,1949 +chrX 1110848 . G . . END=1110848 GT:DP:GQ:MIN_DP:PL 0/0:93:99:93:0,120,1800 +chrX 1110849 . C . . END=1110850 GT:DP:GQ:MIN_DP:PL 0/0:89:0:89:0,0,1851 +chrX 1110851 . T . . END=1110851 GT:DP:GQ:MIN_DP:PL 0/0:92:99:92:0,120,1800 +chrX 1110852 . G . . END=1110852 GT:DP:GQ:MIN_DP:PL 0/0:88:0:88:0,0,2115 +chrX 1110853 . T . . END=1110854 GT:DP:GQ:MIN_DP:PL 0/0:90:99:90:0,120,1800 +chrX 1110855 . C . . END=1110855 GT:DP:GQ:MIN_DP:PL 0/0:83:0:83:0,0,1663 +chrX 1110856 . A . . END=1110880 GT:DP:GQ:MIN_DP:PL 0/0:81:99:81:0,120,1800 +chrX 1110881 . C . . END=1110881 GT:DP:GQ:MIN_DP:PL 0/0:76:0:76:0,0,1765 +chrX 1110882 . A . . END=1110887 GT:DP:GQ:MIN_DP:PL 0/0:79:99:79:0,120,1800 +chrX 1110888 . G . . END=1110894 GT:DP:GQ:MIN_DP:PL 0/0:72:0:72:0,0,1470 +chrX 1110895 . T . . END=1110895 GT:DP:GQ:MIN_DP:PL 0/0:75:99:75:0,120,1800 +chrX 1110896 . A . . END=1110896 GT:DP:GQ:MIN_DP:PL 0/0:74:0:74:0,0,1616 +chrX 1110897 . T . . END=1110898 GT:DP:GQ:MIN_DP:PL 0/0:73:99:73:0,120,1800 +chrX 1110899 . T . . END=1110902 GT:DP:GQ:MIN_DP:PL 0/0:74:0:74:0,0,1529 +chrX 1110903 . C . . END=1110904 GT:DP:GQ:MIN_DP:PL 0/0:76:99:76:0,120,1800 +chrX 1110905 . C . . END=1110910 GT:DP:GQ:MIN_DP:PL 0/0:76:0:76:0,0,1602 +chrX 1110911 . T . . END=1110913 GT:DP:GQ:MIN_DP:PL 0/0:79:99:79:0,120,1800 +chrX 1110914 . A . . END=1110914 GT:DP:GQ:MIN_DP:PL 0/0:76:0:76:0,0,1794 +chrX 1110915 . T . . END=1110915 GT:DP:GQ:MIN_DP:PL 0/0:78:99:78:0,120,1800 +chrX 1110916 . G . . END=1110919 GT:DP:GQ:MIN_DP:PL 0/0:73:0:73:0,0,1493 +chrX 1110920 . G . . END=1110922 GT:DP:GQ:MIN_DP:PL 0/0:74:99:74:0,120,1800 +chrX 1110923 . T . . END=1110926 GT:DP:GQ:MIN_DP:PL 0/0:74:0:74:0,0,1817 +chrX 1110927 . T . . END=1110927 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,120,1800 +chrX 1110928 . A . . END=1110929 GT:DP:GQ:MIN_DP:PL 0/0:70:0:70:0,0,1707 +chrX 1110930 . G . . END=1110930 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 1110931 . C . . END=1110932 GT:DP:GQ:MIN_DP:PL 0/0:68:0:68:0,0,1711 +chrX 1110933 . T . . END=1110935 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 1110936 . T . . END=1110937 GT:DP:GQ:MIN_DP:PL 0/0:66:0:66:0,0,1693 +chrX 1110938 . G . . END=1110939 GT:DP:GQ:MIN_DP:PL 0/0:69:27:67:0,27,1800 +chrX 1110940 . G . . END=1110940 GT:DP:GQ:MIN_DP:PL 0/0:66:0:66:0,0,1646 +chrX 1110941 . T . . END=1110946 GT:DP:GQ:MIN_DP:PL 0/0:71:62:71:0,62,1763 +chrX 1110947 . A . . END=1110948 GT:DP:GQ:MIN_DP:PL 0/0:69:0:69:0,0,1649 +chrX 1110949 . C . . END=1112109 GT:DP:GQ:MIN_DP:PL 0/0:41:26:40:0,26,1091 +chrX 1112110 . T . . END=1112110 GT:DP:GQ:MIN_DP:PL 0/0:41:4:41:0,4,996 +chrX 1112111 . G . . END=1112119 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,104,1295 +chrX 1112120 . G GC, 452.60 . AS_QUALapprox=|460|0;AS_VarDP=17|15|0;BaseQRankSum=-0.186;DP=38;MQRankSum=0.000;QUALapprox=460;RAW_GT_COUNT=0,1,0;RAW_MQandDP=136800,38;ReadPosRankSum=0.548;VarDP=32 GT:AD:DP:GQ:PL:SB 0/1:17,15,0:32:99:460,0,477,511,522,1033:10,7,10,5 +chrX 1112121 . G . . END=1112282 GT:DP:GQ:MIN_DP:PL 0/0:55:58:55:0,58,1086 +chrX 1112283 . A G, 684.64 . AS_QUALapprox=|692|0;AS_VarDP=27|27|0;BaseQRankSum=-0.951;DP=55;MQRankSum=0.000;QUALapprox=692;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-0.009;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:27,27,0:54:99:692,0,722,772,803,1575:13,14,11,16 +chrX 1112284 . C . . END=1112296 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 1112297 . T C, 708.64 . AS_QUALapprox=|716|0;AS_VarDP=31|28|0;BaseQRankSum=-1.452;DP=61;MQRankSum=0.000;QUALapprox=716;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=1.333;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:31,28,0:59:99:716,0,845,853,987,2087:17,14,12,15 +chrX 1112298 . A . . END=1112673 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,112,1782 +chrX 1112674 . G A, 712.64 . AS_QUALapprox=|720|0;AS_VarDP=26|27|0;BaseQRankSum=0.159;DP=57;MQRankSum=0.000;QUALapprox=720;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=0.142;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:26,27,0:53:99:720,0,670,797,751,1548:13,13,14,13 +chrX 1112675 . A . . END=1112748 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 1112749 . G A, 705.64 . AS_QUALapprox=|713|0;AS_VarDP=27|28|0;BaseQRankSum=-0.590;DP=57;MQRankSum=0.000;QUALapprox=713;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-1.507;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:27,28,0:55:99:713,0,712,794,796,1590:14,13,13,15 +chrX 1112750 . C . . END=1113021 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1113022 . G A, 760.64 . AS_QUALapprox=|768|0;AS_VarDP=30|28|0;BaseQRankSum=0.980;DP=63;MQRankSum=-1.001;QUALapprox=768;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226449,63;ReadPosRankSum=-0.444;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:30,28,0:58:99:768,0,808,858,892,1750:16,14,17,11 +chrX 1113023 . T . . END=1113048 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 1113049 . C G, 498.64 . AS_QUALapprox=|506|0;AS_VarDP=31|22|0;BaseQRankSum=-1.046;DP=57;MQRankSum=-1.149;QUALapprox=506;RAW_GT_COUNT=0,1,0;RAW_MQandDP=204849,57;ReadPosRankSum=-1.707;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:31,22,0:53:99:506,0,844,599,910,1509:15,16,15,7 +chrX 1113050 . A . . END=1113115 GT:DP:GQ:MIN_DP:PL 0/0:56:97:56:0,97,1588 +chrX 1113116 . G A, 620.64 . AS_QUALapprox=|628|0;AS_VarDP=35|24|0;BaseQRankSum=1.730;DP=61;MQRankSum=0.000;QUALapprox=628;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=1.196;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:35,24,0:59:99:628,0,898,732,971,1703:19,16,8,16 +chrX 1113117 . A . . END=1113142 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1113143 . A G, 759.64 . AS_QUALapprox=|767|0;AS_VarDP=28|29|0;BaseQRankSum=0.602;DP=58;MQRankSum=0.000;QUALapprox=767;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-0.319;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:28,29,0:57:99:767,0,678,850,765,1615:15,13,12,17 +chrX 1113144 . C . . END=1114046 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,104,1216 +chrX 1114047 . C T, 2248.06 . AS_QUALapprox=|2262|0;AS_VarDP=0|69|0;DP=74;QUALapprox=2262;RAW_GT_COUNT=0,0,1;RAW_MQandDP=256180,74;VarDP=69 GT:AD:DP:GQ:PL:SB 1/1:0,69,0:69:99:2262,207,0,2262,207,2262:0,0,38,31 +chrX 1114048 . G . . END=1114060 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 1114061 . C G, 3037.06 . AS_QUALapprox=|3051|0;AS_VarDP=1|70|0;BaseQRankSum=-0.549;DP=73;MQRankSum=-0.283;QUALapprox=3051;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252580,73;ReadPosRankSum=1.171;VarDP=71 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:1,70,0:71:99:0|1:1114061_C_G:3051,169,0,3054,211,3096:1114061:0,1,37,33 +chrX 1114062 . A . . END=1114064 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1114065 . A G, 3037.06 . AS_QUALapprox=|3051|0;AS_VarDP=1|70|0;BaseQRankSum=-0.558;DP=72;MQRankSum=-0.283;QUALapprox=3051;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248980,72;ReadPosRankSum=1.130;VarDP=71 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:1,70,0:71:99:0|1:1114061_C_G:3051,169,0,3054,211,3096:1114061:0,1,37,33 +chrX 1114066 . G . . END=1114554 GT:DP:GQ:MIN_DP:PL 0/0:65:41:65:0,41,849 +chrX 1114555 . A T, 1602.05 . AS_QUALapprox=|1726|0;AS_VarDP=0|57|0;DP=63;QUALapprox=1726;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1726,171,0,1672,179,1695:0,0,25,27 +chrX 1114556 . A . . END=1115495 GT:DP:GQ:MIN_DP:PL 0/0:67:29:60:0,29,1420 +chrX 1115496 . T . . END=1115496 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,1191 +chrX 1115497 . C . . END=1118281 GT:DP:GQ:MIN_DP:PL 0/0:49:29:42:0,29,1067 +chrX 1118282 . G C, 598.64 . AS_QUALapprox=|606|0;AS_VarDP=24|24|0;BaseQRankSum=0.588;DP=51;MQRankSum=0.000;QUALapprox=606;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-0.670;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:24,24,0:48:99:606,0,585,677,656,1334:14,10,12,12 +chrX 1118283 . T . . END=1118470 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,104,1308 +chrX 1118471 . G T, 680.64 . AS_QUALapprox=|688|0;AS_VarDP=29|26|0;BaseQRankSum=-0.911;DP=58;MQRankSum=0.983;QUALapprox=688;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205876,58;ReadPosRankSum=-0.987;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:29,26,0:55:99:688,0,809,775,887,1662:18,11,13,13 +chrX 1118472 . G . . END=1118570 GT:DP:GQ:MIN_DP:PL 0/0:52:91:52:0,91,1218 +chrX 1118571 . A G, 829.64 . AS_QUALapprox=|837|0;AS_VarDP=26|24|0;BaseQRankSum=-0.312;DP=54;MQRankSum=1.001;QUALapprox=837;RAW_GT_COUNT=0,1,0;RAW_MQandDP=192400,54;ReadPosRankSum=-0.888;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,24,0:50:99:0|1:1118571_A_G:837,0,926,915,998,1913:1118571:7,19,15,9 +chrX 1118572 . A . . END=1118599 GT:DP:GQ:MIN_DP:PL 0/0:43:98:43:0,98,1305 +chrX 1118600 . AG A, 794.60 . AS_QUALapprox=|802|0;AS_VarDP=23|21|0;BaseQRankSum=-0.672;DP=45;MQRankSum=1.001;QUALapprox=802;RAW_GT_COUNT=0,1,0;RAW_MQandDP=160000,45;ReadPosRankSum=-1.587;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,21,0:44:99:0|1:1118571_A_G:802,0,903,872,966,1837:1118571:8,15,15,6 +chrX 1118602 . AG A, 794.60 . AS_QUALapprox=|802|0;AS_VarDP=23|21|0;BaseQRankSum=0.197;DP=45;MQRankSum=1.001;QUALapprox=802;RAW_GT_COUNT=0,1,0;RAW_MQandDP=160000,45;ReadPosRankSum=-1.133;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,21,0:44:99:0|1:1118571_A_G:802,0,903,872,966,1837:1118571:8,15,15,6 +chrX 1118604 . A . . END=1118627 GT:DP:GQ:MIN_DP:PL 0/0:41:76:41:0,76,1146 +chrX 1118628 . A G, 594.64 . AS_QUALapprox=|602|0;AS_VarDP=22|17|0;BaseQRankSum=-2.362;DP=40;MQRankSum=0.931;QUALapprox=602;RAW_GT_COUNT=0,1,0;RAW_MQandDP=142000,40;ReadPosRankSum=1.396;VarDP=39 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,17,0:39:99:0|1:1118571_A_G:602,0,840,669,890,1559:1118571:8,14,10,7 +chrX 1118629 . A . . END=1118698 GT:DP:GQ:MIN_DP:PL 0/0:32:60:32:0,60,749 +chrX 1118699 . G . . END=1118699 GT:DP:GQ:MIN_DP:PL 0/0:20:10:20:0,10,485 +chrX 1118700 . G . . END=1118706 GT:DP:GQ:MIN_DP:PL 0/0:23:38:21:0,38,559 +chrX 1118707 . G . . END=1118707 GT:DP:GQ:MIN_DP:PL 0/0:23:19:23:0,19,539 +chrX 1118708 . G . . END=1118747 GT:DP:GQ:MIN_DP:PL 0/0:26:23:24:0,23,565 +chrX 1118748 . AAAG A, 385.60 . AS_QUALapprox=|393|0;AS_VarDP=19|11|0;BaseQRankSum=1.689;DP=32;MQRankSum=0.000;QUALapprox=393;RAW_GT_COUNT=0,1,0;RAW_MQandDP=115200,32;ReadPosRankSum=0.944;VarDP=30 GT:AD:DP:GQ:PL:SB 0/1:19,11,0:30:99:393,0,409,436,443,879:10,9,7,4 +chrX 1118752 . A . . END=1119092 GT:DP:GQ:MIN_DP:PL 0/0:42:28:30:0,28,743 +chrX 1119093 . AT A, 519.60 . AS_QUALapprox=|527|0;AS_VarDP=26|24|0;BaseQRankSum=-0.221;DP=56;MQRankSum=0.000;QUALapprox=527;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-1.350;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:26,24,0:50:99:527,0,559,604,632,1236:13,13,15,9 +chrX 1119095 . T . . END=1119369 GT:DP:GQ:MIN_DP:PL 0/0:60:84:60:0,84,1567 +chrX 1119370 . GT G, 490.60 . AS_QUALapprox=|498|0;AS_VarDP=24|23|0;BaseQRankSum=-1.358;DP=54;MQRankSum=0.000;QUALapprox=498;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=1.917;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:24,23,0:47:99:498,0,599,569,667,1237:13,11,8,15 +chrX 1119372 . T . . END=1119446 GT:DP:GQ:MIN_DP:PL 0/0:50:31:45:0,31,1115 +chrX 1119447 . C . . END=1119447 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,1184 +chrX 1119448 . T . . END=1119457 GT:DP:GQ:MIN_DP:PL 0/0:52:38:50:0,38,1232 +chrX 1119458 . C . . END=1119458 GT:DP:GQ:MIN_DP:PL 0/0:49:13:49:0,13,1264 +chrX 1119459 . T . . END=1119465 GT:DP:GQ:MIN_DP:PL 0/0:54:43:54:0,43,1291 +chrX 1119466 . C . . END=1119466 GT:DP:GQ:MIN_DP:PL 0/0:50:16:50:0,16,1228 +chrX 1119467 . T . . END=1119647 GT:DP:GQ:MIN_DP:PL 0/0:55:30:47:0,30,1214 +chrX 1119648 . AG A, 879.60 . AS_QUALapprox=|887|0;AS_VarDP=20|29|0;BaseQRankSum=1.204;DP=53;MQRankSum=0.000;QUALapprox=887;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=0.234;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:20,29,0:49:99:887,0,564,947,651,1599:10,10,15,14 +chrX 1119650 . G . . END=1119904 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,107,1489 +chrX 1119905 . A AT, 337.60 . AS_QUALapprox=|345|0;AS_VarDP=24|18|0;BaseQRankSum=-0.325;DP=51;MQRankSum=-1.618;QUALapprox=345;RAW_GT_COUNT=0,1,0;RAW_MQandDP=179849,51;ReadPosRankSum=-1.869;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:24,18,0:42:99:345,0,510,417,564,980:13,11,9,9 +chrX 1119906 . T . . END=1119938 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,105,1286 +chrX 1119939 . A G, 380.64 . AS_QUALapprox=|388|0;AS_VarDP=25|16|0;BaseQRankSum=1.029;DP=42;MQRankSum=0.000;QUALapprox=388;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151200,42;ReadPosRankSum=0.963;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:25,16,0:41:99:388,0,656,463,704,1167:14,11,7,9 +chrX 1119940 . C . . END=1120162 GT:DP:GQ:MIN_DP:PL 0/0:49:91:49:0,91,1271 +chrX 1120163 . GTC G, 1021.60 . AS_QUALapprox=|1029|0;AS_VarDP=27|28|0;BaseQRankSum=-1.591;DP=60;MQRankSum=0.000;QUALapprox=1029;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=-2.451;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:27,28,0:55:99:1029,0,967,1110,1051,2161:15,12,16,12 +chrX 1120166 . T . . END=1120278 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1120279 . C T, 948.64 . AS_QUALapprox=|956|0;AS_VarDP=18|34|0;BaseQRankSum=1.099;DP=53;MQRankSum=0.000;QUALapprox=956;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=0.115;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:18,34,0:52:99:956,0,395,1009,497,1506:9,9,23,11 +chrX 1120280 . G . . END=1120532 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,108,1628 +chrX 1120533 . G . . END=1120533 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,1150 +chrX 1120534 . A . . END=1120585 GT:DP:GQ:MIN_DP:PL 0/0:54:66:54:0,66,1344 +chrX 1120586 . C G, 858.64 . AS_QUALapprox=|866|0;AS_VarDP=15|30|0;BaseQRankSum=-1.441;DP=49;MQRankSum=0.000;QUALapprox=866;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=0.783;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:15,30,0:45:99:866,0,386,911,476,1388:5,10,13,17 +chrX 1120587 . T . . END=1121021 GT:DP:GQ:MIN_DP:PL 0/0:59:70:59:0,70,1531 +chrX 1121022 . G A, 974.64 . AS_QUALapprox=|982|0;AS_VarDP=18|38|0;BaseQRankSum=-2.018;DP=58;MQRankSum=0.000;QUALapprox=982;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-0.360;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:18,38,0:56:99:982,0,427,1036,541,1578:12,6,23,15 +chrX 1121023 . G . . END=1121216 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 1121217 . G A, 1031.64 . AS_QUALapprox=|1039|0;AS_VarDP=27|37|0;BaseQRankSum=0.427;DP=69;MQRankSum=-0.823;QUALapprox=1039;RAW_GT_COUNT=0,1,0;RAW_MQandDP=246400,69;ReadPosRankSum=-1.557;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:27,37,0:64:99:1039,0,657,1119,768,1887:14,13,18,19 +chrX 1121218 . C . . END=1121265 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,114,1515 +chrX 1121266 . A G, 749.64 . AS_QUALapprox=|757|0;AS_VarDP=17|30|0;BaseQRankSum=-1.245;DP=52;MQRankSum=0.000;QUALapprox=757;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=0.786;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:17,30,0:47:99:757,0,421,808,510,1318:8,9,17,13 +chrX 1121267 . T . . END=1121738 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,104,1513 +chrX 1121739 . A C, 815.64 . AS_QUALapprox=|823|0;AS_VarDP=26|32|0;BaseQRankSum=-1.792;DP=60;MQRankSum=0.000;QUALapprox=823;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=0.657;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:26,32,0:58:99:823,0,699,901,795,1696:14,12,16,16 +chrX 1121740 . G . . END=1121931 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1121932 . C T, 931.64 . AS_QUALapprox=|939|0;AS_VarDP=26|32|0;BaseQRankSum=3.359;DP=58;MQRankSum=0.000;QUALapprox=939;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=0.704;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:26,32,0:58:99:939,0,634,1016,731,1747:9,17,17,15 +chrX 1121933 . G . . END=1122545 GT:DP:GQ:MIN_DP:PL 0/0:48:76:48:0,76,1250 +chrX 1122546 . C A, 943.64 . AS_QUALapprox=|951|0;AS_VarDP=21|34|0;BaseQRankSum=-1.522;DP=55;MQRankSum=0.000;QUALapprox=951;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=0.451;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:21,34,0:55:99:951,0,545,1014,646,1660:11,10,22,12 +chrX 1122547 . T . . END=1123775 GT:DP:GQ:MIN_DP:PL 0/0:56:54:56:0,54,1271 +chrX 1123776 . C G, 869.64 . AS_QUALapprox=|877|0;AS_VarDP=18|32|0;BaseQRankSum=-0.815;DP=50;MQRankSum=0.000;QUALapprox=877;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=-0.930;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:18,32,0:50:99:877,0,467,931,562,1492:15,3,21,11 +chrX 1123777 . C . . END=1124513 GT:DP:GQ:MIN_DP:PL 0/0:56:55:56:0,55,1221 +chrX 1124514 . CACGT C, 396.60 . AS_QUALapprox=|404|0;AS_VarDP=26|15|0;BaseQRankSum=-0.424;DP=45;MQRankSum=0.000;QUALapprox=404;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=0.986;VarDP=41 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,15,0:41:99:0|1:1124514_CACGT_C:404,0,990,482,1036,1518:1124514:14,12,3,12 +chrX 1124519 . G . . END=1125141 GT:DP:GQ:MIN_DP:PL 0/0:49:59:49:0,59,1135 +chrX 1125142 . TTAGA T, 632.60 . AS_QUALapprox=|640|0;AS_VarDP=22|17|0;BaseQRankSum=0.218;DP=47;MQRankSum=0.000;QUALapprox=640;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=-0.176;VarDP=39 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,17,0:39:99:0|1:1125142_TTAGA_T:640,0,872,706,924,1630:1125142:11,11,7,10 +chrX 1125147 . T . . END=1125213 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,114,1149 +chrX 1125214 . TAGAC T, 793.60 . AS_QUALapprox=|801|0;AS_VarDP=27|21|0;BaseQRankSum=-0.500;DP=49;MQRankSum=0.000;QUALapprox=801;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=0.867;VarDP=48 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,21,0:48:99:0|1:1125142_TTAGA_T:801,0,1064,882,1127,2009:1125142:13,14,9,12 +chrX 1125219 . A . . END=1125295 GT:DP:GQ:MIN_DP:PL 0/0:38:48:38:0,48,933 +chrX 1125296 . TGATA T, 623.60 . AS_QUALapprox=|631|0;AS_VarDP=13|17|0;BaseQRankSum=-1.116;DP=36;MQRankSum=-0.807;QUALapprox=631;RAW_GT_COUNT=0,1,0;RAW_MQandDP=127521,36;ReadPosRankSum=1.116;VarDP=30 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:13,17,0:30:99:0|1:1125296_TGATA_T:631,0,486,671,536,1208:1125296:6,7,8,9 +chrX 1125301 . G . . END=1125324 GT:DP:GQ:MIN_DP:PL 0/0:34:77:34:0,77,1007 +chrX 1125325 . T C, 627.64 . AS_QUALapprox=|635|0;AS_VarDP=16|19|0;BaseQRankSum=-2.547;DP=37;MQRankSum=-0.860;QUALapprox=635;RAW_GT_COUNT=0,1,0;RAW_MQandDP=129042,37;ReadPosRankSum=1.190;VarDP=35 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:16,19,0:35:99:0|1:1125296_TGATA_T:635,0,552,683,608,1291:1125296:8,8,8,11 +chrX 1125326 . A . . END=1125528 GT:DP:GQ:MIN_DP:PL 0/0:40:78:40:0,78,1126 +chrX 1125529 . G A, 537.64 . AS_QUALapprox=|545|0;AS_VarDP=23|20|0;BaseQRankSum=0.372;DP=44;MQRankSum=0.000;QUALapprox=545;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=-1.474;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:23,20,0:43:99:545,0,625,613,686,1299:11,12,12,8 +chrX 1125530 . A . . END=1126647 GT:DP:GQ:MIN_DP:PL 0/0:52:65:52:0,65,1082 +chrX 1126648 . G C, 702.64 . AS_QUALapprox=|710|0;AS_VarDP=34|27|0;BaseQRankSum=0.384;DP=62;MQRankSum=0.000;QUALapprox=710;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=-2.230;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:34,27,0:61:99:710,0,934,812,1015,1827:18,16,13,14 +chrX 1126649 . G . . END=1126827 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 1126828 . T A, 601.64 . AS_QUALapprox=|609|0;AS_VarDP=31|25|0;BaseQRankSum=-2.006;DP=56;MQRankSum=0.000;QUALapprox=609;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=0.008;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:31,25,0:56:99:609,0,868,702,943,1645:18,13,14,11 +chrX 1126829 . A . . END=1127212 GT:DP:GQ:MIN_DP:PL 0/0:58:91:58:0,91,1191 +chrX 1127213 . A ATAGG, 1284.60 . AS_QUALapprox=|1292|0;AS_VarDP=17|32|0;BaseQRankSum=-0.772;DP=50;MQRankSum=0.000;QUALapprox=1292;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=0.000;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:17,32,0:49:99:1292,0,618,1343,714,2057:8,9,18,14 +chrX 1127214 . T . . END=1127291 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 1127292 . CACAGGTACAGGT C, 1213.60 . AS_QUALapprox=|1221|0;AS_VarDP=27|31|0;BaseQRankSum=2.433;DP=68;MQRankSum=0.000;QUALapprox=1221;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=0.674;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:27,31,0:58:99:1221,0,1029,1303,1123,2426:11,16,13,18 +chrX 1127305 . A . . END=1127379 GT:DP:GQ:MIN_DP:PL 0/0:82:99:82:0,120,1800 +chrX 1127380 . C . . END=1127380 GT:DP:GQ:MIN_DP:PL 0/0:78:0:78:0,0,0 +chrX 1127381 . G . . END=1127435 GT:DP:GQ:MIN_DP:PL 0/0:75:99:75:0,114,1710 +chrX 1127436 . G . . END=1127437 GT:DP:GQ:MIN_DP:PL 0/0:68:0:68:0,0,325 +chrX 1127438 . G . . END=1127439 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1127440 . C . . END=1127440 GT:DP:GQ:MIN_DP:PL 0/0:66:0:66:0,0,317 +chrX 1127441 . G . . END=1127441 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 1127442 . G . . END=1127443 GT:DP:GQ:MIN_DP:PL 0/0:64:0:64:0,0,1482 +chrX 1127444 . G . . END=1127446 GT:DP:GQ:MIN_DP:PL 0/0:61:44:61:0,44,1473 +chrX 1127447 . G . . END=1127447 GT:DP:GQ:MIN_DP:PL 0/0:60:0:60:0,0,914 +chrX 1127448 . C . . END=1127475 GT:DP:GQ:MIN_DP:PL 0/0:53:80:53:0,80,1350 +chrX 1127476 . G . . END=1127479 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,754 +chrX 1127480 . G . . END=1127482 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,1305 +chrX 1127483 . A . . END=1127483 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,554 +chrX 1127484 . C . . END=1127533 GT:DP:GQ:MIN_DP:PL 0/0:30:20:26:0,20,590 +chrX 1127534 . A . . END=1127534 GT:DP:GQ:MIN_DP:PL 0/0:22:0:22:0,0,406 +chrX 1127535 . G . . END=1127551 GT:DP:GQ:MIN_DP:PL 0/0:19:22:16:0,22,416 +chrX 1127552 . T . . END=1127552 GT:DP:GQ:MIN_DP:PL 0/0:14:17:14:0,17,377 +chrX 1127553 . G . . END=1127568 GT:DP:GQ:MIN_DP:PL 0/0:15:27:13:0,27,405 +chrX 1127569 . G . . END=1127575 GT:DP:GQ:MIN_DP:PL 0/0:13:0:13:0,0,218 +chrX 1127576 . G . . END=1127576 GT:DP:GQ:MIN_DP:PL 0/0:15:33:15:0,33,495 +chrX 1127577 . A . . END=1127577 GT:DP:GQ:MIN_DP:PL 0/0:14:7:14:0,7,337 +chrX 1127578 . C . . END=1127605 GT:DP:GQ:MIN_DP:PL 0/0:14:30:14:0,30,357 +chrX 1127606 . G . . END=1127606 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,297 +chrX 1127607 . A . . END=1127612 GT:DP:GQ:MIN_DP:PL 0/0:14:36:14:0,36,422 +chrX 1127613 . A . . END=1127613 GT:DP:GQ:MIN_DP:PL 0/0:14:7:14:0,7,367 +chrX 1127614 . C . . END=1127614 GT:DP:GQ:MIN_DP:PL 0/0:13:33:13:0,33,495 +chrX 1127615 . A . . END=1127615 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,258 +chrX 1127616 . G . . END=1127617 GT:DP:GQ:MIN_DP:PL 0/0:14:42:14:0,42,447 +chrX 1127618 . T G, 178.02 . AS_QUALapprox=|192|0;AS_VarDP=0|7|0;DP=8;QUALapprox=192;RAW_GT_COUNT=0,0,1;RAW_MQandDP=11816,8;VarDP=7 GT:AD:DP:GQ:PL:SB 1/1:0,7,0:7:21:192,21,0,192,21,192:0,0,2,5 +chrX 1127619 . G . . END=1127624 GT:DP:GQ:MIN_DP:PL 0/0:15:39:15:0,39,491 +chrX 1127625 . G . . END=1127626 GT:DP:GQ:MIN_DP:PL 0/0:15:0:15:0,0,362 +chrX 1127627 . A . . END=1127641 GT:DP:GQ:MIN_DP:PL 0/0:15:36:14:0,36,487 +chrX 1127642 . G . . END=1127642 GT:DP:GQ:MIN_DP:PL 0/0:13:0:13:0,0,293 +chrX 1127643 . A . . END=1127650 GT:DP:GQ:MIN_DP:PL 0/0:14:33:13:0,33,342 +chrX 1127651 . A . . END=1127652 GT:DP:GQ:MIN_DP:PL 0/0:13:0:13:0,0,209 +chrX 1127653 . G . . END=1127654 GT:DP:GQ:MIN_DP:PL 0/0:13:36:13:0,36,357 +chrX 1127655 . G . . END=1127657 GT:DP:GQ:MIN_DP:PL 0/0:13:0:13:0,0,238 +chrX 1127658 . G . . END=1127677 GT:DP:GQ:MIN_DP:PL 0/0:13:36:13:0,36,382 +chrX 1127678 . G . . END=1127678 GT:DP:GQ:MIN_DP:PL 0/0:12:1:12:0,1,318 +chrX 1127679 . A . . END=1127689 GT:DP:GQ:MIN_DP:PL 0/0:12:33:12:0,33,352 +chrX 1127690 . T . . END=1127690 GT:DP:GQ:MIN_DP:PL 0/0:12:0:12:0,0,239 +chrX 1127691 . G . . END=1127707 GT:DP:GQ:MIN_DP:PL 0/0:12:30:12:0,30,307 +chrX 1127708 . T . . END=1127708 GT:DP:GQ:MIN_DP:PL 0/0:14:17:14:0,17,397 +chrX 1127709 . G . . END=1127722 GT:DP:GQ:MIN_DP:PL 0/0:14:24:13:0,24,360 +chrX 1127723 . A . . END=1127724 GT:DP:GQ:MIN_DP:PL 0/0:13:4:13:0,4,312 +chrX 1127725 . G . . END=1127725 GT:DP:GQ:MIN_DP:PL 0/0:13:24:13:0,24,360 +chrX 1127726 . T . . END=1127726 GT:DP:GQ:MIN_DP:PL 0/0:10:0:10:0,0,219 +chrX 1127727 . G . . END=1127727 GT:DP:GQ:MIN_DP:PL 0/0:11:21:11:0,21,315 +chrX 1127728 . T . . END=1127729 GT:DP:GQ:MIN_DP:PL 0/0:10:0:10:0,0,145 +chrX 1127730 . G . . END=1127751 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,203 +chrX 1127752 . C . . END=1127752 GT:DP:GQ:MIN_DP:PL 0/0:11:19:11:0,19,293 +chrX 1127753 . A . . END=1127756 GT:DP:GQ:MIN_DP:PL 0/0:11:27:10:0,27,405 +chrX 1127757 . A . . END=1127758 GT:DP:GQ:MIN_DP:PL 0/0:11:8:11:0,8,279 +chrX 1127759 . A . . END=1127761 GT:DP:GQ:MIN_DP:PL 0/0:10:30:10:0,30,318 +chrX 1127762 . T . . END=1127762 GT:DP:GQ:MIN_DP:PL 0/0:10:5:10:0,5,268 +chrX 1127763 . G . . END=1127773 GT:DP:GQ:MIN_DP:PL 0/0:12:30:12:0,30,328 +chrX 1127774 . T . . END=1127774 GT:DP:GQ:MIN_DP:PL 0/0:11:8:11:0,8,313 +chrX 1127775 . G . . END=1127777 GT:DP:GQ:MIN_DP:PL 0/0:12:33:12:0,33,372 +chrX 1127778 . A . . END=1127779 GT:DP:GQ:MIN_DP:PL 0/0:12:14:12:0,14,313 +chrX 1127780 . T . . END=1127794 GT:DP:GQ:MIN_DP:PL 0/0:13:33:13:0,33,332 +chrX 1127795 . A . . END=1127795 GT:DP:GQ:MIN_DP:PL 0/0:13:14:13:0,14,372 +chrX 1127796 . G . . END=1127799 GT:DP:GQ:MIN_DP:PL 0/0:14:42:14:0,42,447 +chrX 1127800 . T . . END=1127801 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,139 +chrX 1127802 . G . . END=1127806 GT:DP:GQ:MIN_DP:PL 0/0:15:45:15:0,45,471 +chrX 1127807 . A . . END=1127807 GT:DP:GQ:MIN_DP:PL 0/0:17:0:17:0,0,273 +chrX 1127808 . G . . END=1127831 GT:DP:GQ:MIN_DP:PL 0/0:18:29:17:0,29,481 +chrX 1127832 . G . . END=1127832 GT:DP:GQ:MIN_DP:PL 0/0:21:0:21:0,0,422 +chrX 1127833 . G . . END=1127857 GT:DP:GQ:MIN_DP:PL 0/0:21:42:21:0,42,630 +chrX 1127858 . T . . END=1127858 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,336 +chrX 1127859 . A . . END=1127881 GT:DP:GQ:MIN_DP:PL 0/0:13:24:13:0,24,281 +chrX 1127882 . T . . END=1127882 GT:DP:GQ:MIN_DP:PL 0/0:14:7:14:0,7,357 +chrX 1127883 . G . . END=1127884 GT:DP:GQ:MIN_DP:PL 0/0:14:42:14:0,42,416 +chrX 1127885 . C . . END=1127885 GT:DP:GQ:MIN_DP:PL 0/0:14:17:14:0,17,357 +chrX 1127886 . A . . END=1127886 GT:DP:GQ:MIN_DP:PL 0/0:14:42:14:0,42,376 +chrX 1127887 . C . . END=1127888 GT:DP:GQ:MIN_DP:PL 0/0:14:7:14:0,7,357 +chrX 1127889 . G . . END=1127889 GT:DP:GQ:MIN_DP:PL 0/0:14:36:14:0,36,540 +chrX 1127890 . C . . END=1127890 GT:DP:GQ:MIN_DP:PL 0/0:14:7:14:0,7,337 +chrX 1127891 . A . . END=1127891 GT:DP:GQ:MIN_DP:PL 0/0:14:33:14:0,33,495 +chrX 1127892 . G . . END=1127893 GT:DP:GQ:MIN_DP:PL 0/0:14:7:14:0,7,347 +chrX 1127894 . G . . END=1127894 GT:DP:GQ:MIN_DP:PL 0/0:13:33:13:0,33,495 +chrX 1127895 . A . . END=1127895 GT:DP:GQ:MIN_DP:PL 0/0:14:17:14:0,17,337 +chrX 1127896 . C . . END=1127897 GT:DP:GQ:MIN_DP:PL 0/0:14:33:14:0,33,495 +chrX 1127898 . G . . END=1127899 GT:DP:GQ:MIN_DP:PL 0/0:15:7:15:0,7,357 +chrX 1127900 . G . . END=1127900 GT:DP:GQ:MIN_DP:PL 0/0:15:36:15:0,36,540 +chrX 1127901 . A . . END=1127901 GT:DP:GQ:MIN_DP:PL 0/0:14:7:14:0,7,377 +chrX 1127902 . C . . END=1127905 GT:DP:GQ:MIN_DP:PL 0/0:14:36:14:0,36,540 +chrX 1127906 . G . . END=1127906 GT:DP:GQ:MIN_DP:PL 0/0:14:7:14:0,7,367 +chrX 1127907 . G . . END=1127907 GT:DP:GQ:MIN_DP:PL 0/0:13:36:13:0,36,540 +chrX 1127908 . G . . END=1127909 GT:DP:GQ:MIN_DP:PL 0/0:14:14:14:0,14,352 +chrX 1127910 . G . . END=1127911 GT:DP:GQ:MIN_DP:PL 0/0:13:36:13:0,36,367 +chrX 1127912 . T . . END=1127913 GT:DP:GQ:MIN_DP:PL 0/0:13:7:13:0,7,266 +chrX 1127914 . C . . END=1127914 GT:DP:GQ:MIN_DP:PL 0/0:14:28:14:0,28,357 +chrX 1127915 . A . . END=1127915 GT:DP:GQ:MIN_DP:PL 0/0:14:17:14:0,17,367 +chrX 1127916 . G . . END=1127918 GT:DP:GQ:MIN_DP:PL 0/0:14:28:14:0,28,367 +chrX 1127919 . G . . END=1127923 GT:DP:GQ:MIN_DP:PL 0/0:14:7:14:0,7,337 +chrX 1127924 . T . . END=1127925 GT:DP:GQ:MIN_DP:PL 0/0:14:30:14:0,30,450 +chrX 1127926 . C . . END=1127931 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,103 +chrX 1127932 . C . . END=1127933 GT:DP:GQ:MIN_DP:PL 0/0:13:33:13:0,33,495 +chrX 1127934 . G . . END=1127935 GT:DP:GQ:MIN_DP:PL 0/0:13:1:13:0,1,287 +chrX 1127936 . G . . END=1127936 GT:DP:GQ:MIN_DP:PL 0/0:12:27:12:0,27,405 +chrX 1127937 . A . . END=1127937 GT:DP:GQ:MIN_DP:PL 0/0:12:1:12:0,1,287 +chrX 1127938 . C . . END=1127938 GT:DP:GQ:MIN_DP:PL 0/0:12:24:12:0,24,360 +chrX 1127939 . A . . END=1127939 GT:DP:GQ:MIN_DP:PL 0/0:12:1:12:0,1,287 +chrX 1127940 . G . . END=1127941 GT:DP:GQ:MIN_DP:PL 0/0:12:27:12:0,27,405 +chrX 1127942 . G . . END=1127942 GT:DP:GQ:MIN_DP:PL 0/0:12:0:12:0,0,218 +chrX 1127943 . G . . END=1127944 GT:DP:GQ:MIN_DP:PL 0/0:11:24:11:0,24,360 +chrX 1127945 . A . . END=1127945 GT:DP:GQ:MIN_DP:PL 0/0:9:13:9:0,13,234 +chrX 1127946 . G . . END=1127948 GT:DP:GQ:MIN_DP:PL 0/0:9:24:9:0,24,258 +chrX 1127949 . G . . END=1127949 GT:DP:GQ:MIN_DP:PL 0/0:10:0:10:0,0,207 +chrX 1127950 . C . . END=1127974 GT:DP:GQ:MIN_DP:PL 0/0:11:24:9:0,24,248 +chrX 1127975 . A . . END=1127975 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,263 +chrX 1127976 . G . . END=1127977 GT:DP:GQ:MIN_DP:PL 0/0:11:30:11:0,30,318 +chrX 1127978 . T . . END=1127981 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,189 +chrX 1127982 . G . . END=1127984 GT:DP:GQ:MIN_DP:PL 0/0:10:30:10:0,30,297 +chrX 1127985 . G . . END=1127985 GT:DP:GQ:MIN_DP:PL 0/0:9:2:9:0,2,223 +chrX 1127986 . C . . END=1128001 GT:DP:GQ:MIN_DP:PL 0/0:14:30:13:0,30,287 +chrX 1128002 . G . . END=1128002 GT:DP:GQ:MIN_DP:PL 0/0:16:13:16:0,13,386 +chrX 1128003 . A . . END=1128010 GT:DP:GQ:MIN_DP:PL 0/0:18:48:18:0,48,535 +chrX 1128011 . A . . END=1128011 GT:DP:GQ:MIN_DP:PL 0/0:15:0:15:0,0,313 +chrX 1128012 . G . . END=1128013 GT:DP:GQ:MIN_DP:PL 0/0:21:60:21:0,60,585 +chrX 1128014 . T . . END=1128014 GT:DP:GQ:MIN_DP:PL 0/0:18:0:18:0,0,406 +chrX 1128015 . G . . END=1128016 GT:DP:GQ:MIN_DP:PL 0/0:17:45:17:0,45,390 +chrX 1128017 . G . . END=1128017 GT:DP:GQ:MIN_DP:PL 0/0:16:13:16:0,13,376 +chrX 1128018 . G . . END=1128088 GT:DP:GQ:MIN_DP:PL 0/0:18:22:15:0,22,427 +chrX 1128089 . A . . END=1128089 GT:DP:GQ:MIN_DP:PL 0/0:13:14:13:0,14,372 +chrX 1128090 . G . . END=1128093 GT:DP:GQ:MIN_DP:PL 0/0:15:36:15:0,36,540 +chrX 1128094 . C . . END=1128094 GT:DP:GQ:MIN_DP:PL 0/0:13:4:13:0,4,362 +chrX 1128095 . A . . END=1128109 GT:DP:GQ:MIN_DP:PL 0/0:12:21:12:0,21,315 +chrX 1128110 . T . . END=1128230 GT:DP:GQ:MIN_DP:PL 0/0:2:0:2:0,0,20 +chrX 1128231 . G . . END=1128231 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,243 +chrX 1128232 . G . . END=1128232 GT:DP:GQ:MIN_DP:PL 0/0:7:0:7:0,0,164 +chrX 1128233 . G . . END=1128237 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,223 +chrX 1128238 . C . . END=1128238 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,188 +chrX 1128239 . A . . END=1128239 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,243 +chrX 1128240 . G . . END=1128240 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,199 +chrX 1128241 . A . . END=1128276 GT:DP:GQ:MIN_DP:PL 0/0:9:21:8:0,21,203 +chrX 1128277 . A . . END=1128277 GT:DP:GQ:MIN_DP:PL 0/0:10:16:10:0,16,258 +chrX 1128278 . T . . END=1128278 GT:DP:GQ:MIN_DP:PL 0/0:10:30:10:0,30,297 +chrX 1128279 . G . . END=1128279 GT:DP:GQ:MIN_DP:PL 0/0:10:16:10:0,16,268 +chrX 1128280 . T . . END=1128288 GT:DP:GQ:MIN_DP:PL 0/0:11:27:9:0,27,303 +chrX 1128289 . G . . END=1128289 GT:DP:GQ:MIN_DP:PL 0/0:11:8:11:0,8,262 +chrX 1128290 . G . . END=1128312 GT:DP:GQ:MIN_DP:PL 0/0:11:24:8:0,24,268 +chrX 1128313 . A . . END=1128313 GT:DP:GQ:MIN_DP:PL 0/0:11:8:11:0,8,303 +chrX 1128314 . T . . END=1128325 GT:DP:GQ:MIN_DP:PL 0/0:11:30:11:0,30,328 +chrX 1128326 . T . . END=1128326 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,272 +chrX 1128327 . A . . END=1128336 GT:DP:GQ:MIN_DP:PL 0/0:11:33:11:0,33,352 +chrX 1128337 . A . . END=1128337 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,262 +chrX 1128338 . T . . END=1128347 GT:DP:GQ:MIN_DP:PL 0/0:11:21:11:0,21,315 +chrX 1128348 . G . . END=1128482 GT:DP:GQ:MIN_DP:PL 0/0:4:0:4:0,0,0 +chrX 1128483 . G . . END=1128514 GT:DP:GQ:MIN_DP:PL 0/0:10:21:9:0,21,233 +chrX 1128515 . A . . END=1128515 GT:DP:GQ:MIN_DP:PL 0/0:15:10:15:0,10,452 +chrX 1128516 . G . . END=1128519 GT:DP:GQ:MIN_DP:PL 0/0:16:42:16:0,42,467 +chrX 1128520 . G . . END=1128521 GT:DP:GQ:MIN_DP:PL 0/0:16:10:16:0,10,452 +chrX 1128522 . G . . END=1128526 GT:DP:GQ:MIN_DP:PL 0/0:16:45:16:0,45,675 +chrX 1128527 . A . . END=1128527 GT:DP:GQ:MIN_DP:PL 0/0:17:0:17:0,0,462 +chrX 1128528 . G . . END=1128551 GT:DP:GQ:MIN_DP:PL 0/0:20:42:20:0,42,551 +chrX 1128552 . G . . END=1128552 GT:DP:GQ:MIN_DP:PL 0/0:19:8:19:0,8,511 +chrX 1128553 . G . . END=1128556 GT:DP:GQ:MIN_DP:PL 0/0:20:57:20:0,57,855 +chrX 1128557 . A . . END=1128557 GT:DP:GQ:MIN_DP:PL 0/0:18:15:18:0,15,477 +chrX 1128558 . G . . END=1128589 GT:DP:GQ:MIN_DP:PL 0/0:20:51:20:0,51,576 +chrX 1128590 . T . . END=1128590 GT:DP:GQ:MIN_DP:PL 0/0:17:0:17:0,0,63 +chrX 1128591 . G . . END=1128591 GT:DP:GQ:MIN_DP:PL 0/0:24:63:24:0,63,945 +chrX 1128592 . G . . END=1128593 GT:DP:GQ:MIN_DP:PL 0/0:20:0:20:0,0,233 +chrX 1128594 . G . . END=1128625 GT:DP:GQ:MIN_DP:PL 0/0:23:22:20:0,22,549 +chrX 1128626 . T . . END=1128626 GT:DP:GQ:MIN_DP:PL 0/0:24:0:24:0,0,535 +chrX 1128627 . G . . END=1128627 GT:DP:GQ:MIN_DP:PL 0/0:23:60:23:0,60,900 +chrX 1128628 . T . . END=1128628 GT:DP:GQ:MIN_DP:PL 0/0:24:2:24:0,2,554 +chrX 1128629 . G . . END=1128685 GT:DP:GQ:MIN_DP:PL 0/0:20:25:18:0,25,500 +chrX 1128686 . G . . END=1128686 GT:DP:GQ:MIN_DP:PL 0/0:17:2:17:0,2,422 +chrX 1128687 . A . . END=1128693 GT:DP:GQ:MIN_DP:PL 0/0:16:31:15:0,31,412 +chrX 1128694 . C . . END=1128694 GT:DP:GQ:MIN_DP:PL 0/0:15:10:15:0,10,371 +chrX 1128695 . A . . END=1128801 GT:DP:GQ:MIN_DP:PL 0/0:23:23:16:0,23,392 +chrX 1128802 . G . . END=1128802 GT:DP:GQ:MIN_DP:PL 0/0:21:0:21:0,0,561 +chrX 1128803 . G . . END=1128832 GT:DP:GQ:MIN_DP:PL 0/0:22:31:19:0,31,540 +chrX 1128833 . G . . END=1128833 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,337 +chrX 1128834 . G . . END=1128839 GT:DP:GQ:MIN_DP:PL 0/0:31:51:31:0,51,765 +chrX 1128840 . T . . END=1128840 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,0 +chrX 1128841 . G . . END=1128842 GT:DP:GQ:MIN_DP:PL 0/0:33:50:33:0,50,988 +chrX 1128843 . A . . END=1128843 GT:DP:GQ:MIN_DP:PL 0/0:30:16:30:0,16,784 +chrX 1128844 . G . . END=1128868 GT:DP:GQ:MIN_DP:PL 0/0:35:68:35:0,68,865 +chrX 1128869 . G C, 293.64 . AS_QUALapprox=|301|0;AS_VarDP=20|14|0;BaseQRankSum=-0.801;DP=34;MQRankSum=1.016;QUALapprox=301;RAW_GT_COUNT=0,1,0;RAW_MQandDP=78765,34;ReadPosRankSum=0.105;VarDP=34 GT:AD:DP:GQ:PL:SB 0/1:20,14,0:34:99:301,0,494,360,535,895:7,13,11,3 +chrX 1128870 . G . . END=1133520 GT:DP:GQ:MIN_DP:PL 0/0:65:43:65:0,43,1130 +chrX 1133521 . A G, 510.64 . AS_QUALapprox=|518|0;AS_VarDP=29|20|0;BaseQRankSum=0.270;DP=55;MQRankSum=0.000;QUALapprox=518;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=0.295;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:29,20,0:49:99:518,0,794,605,855,1459:12,17,10,10 +chrX 1133522 . A . . END=1134659 GT:DP:GQ:MIN_DP:PL 0/0:61:91:61:0,91,1414 +chrX 1134660 . G C, 917.64 . AS_QUALapprox=|925|0;AS_VarDP=28|34|0;BaseQRankSum=1.098;DP=63;MQRankSum=-0.380;QUALapprox=925;RAW_GT_COUNT=0,1,0;RAW_MQandDP=222336,63;ReadPosRankSum=0.057;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:28,34,0:62:99:925,0,678,1008,780,1789:16,12,16,18 +chrX 1134661 . T . . END=1135631 GT:DP:GQ:MIN_DP:PL 0/0:49:22:47:0,22,1210 +chrX 1135632 . C CAA, 1033.60 . AS_QUALapprox=|1041|0;AS_VarDP=17|27|0;BaseQRankSum=-1.051;DP=47;MQRankSum=0.000;QUALapprox=1041;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=0.301;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:17,27,0:44:99:1041,0,622,1092,704,1796:12,5,11,16 +chrX 1135633 . G . . END=1136036 GT:DP:GQ:MIN_DP:PL 0/0:51:40:51:0,40,943 +chrX 1136037 . C . . END=1136037 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,918 +chrX 1136038 . A . . END=1136047 GT:DP:GQ:MIN_DP:PL 0/0:36:51:36:0,51,948 +chrX 1136048 . G . . END=1136048 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,806 +chrX 1136049 . T . . END=1136049 GT:DP:GQ:MIN_DP:PL 0/0:35:31:35:0,31,968 +chrX 1136050 . C . . END=1136051 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,878 +chrX 1136052 . CAAA C, 161.60 . AS_QUALapprox=|169|0;AS_VarDP=13|6|0;BaseQRankSum=-0.792;DP=35;MQRankSum=0.000;QUALapprox=169;RAW_GT_COUNT=0,1,0;RAW_MQandDP=121541,35;ReadPosRankSum=0.000;VarDP=19 GT:AD:DP:GQ:PL:SB 0/1:13,6,0:19:99:169,0,397,208,416,623:6,7,5,1 +chrX 1136056 . A . . END=1136107 GT:DP:GQ:MIN_DP:PL 0/0:43:43:37:0,43,794 +chrX 1136108 . G . . END=1136108 GT:DP:GQ:MIN_DP:PL 0/0:53:0:53:0,0,1354 +chrX 1136109 . A . . END=1136115 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 1136116 . G . . END=1136116 GT:DP:GQ:MIN_DP:PL 0/0:55:18:55:0,18,1476 +chrX 1136117 . A . . END=1136565 GT:DP:GQ:MIN_DP:PL 0/0:55:22:51:0,22,1306 +chrX 1136566 . A . . END=1136566 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,922 +chrX 1136567 . C . . END=1136617 GT:DP:GQ:MIN_DP:PL 0/0:51:87:51:0,87,1367 +chrX 1136618 . A G, 584.64 . AS_QUALapprox=|592|0;AS_VarDP=21|23|0;BaseQRankSum=0.106;DP=51;MQRankSum=1.063;QUALapprox=592;RAW_GT_COUNT=0,1,0;RAW_MQandDP=173466,51;ReadPosRankSum=1.775;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:21,23,0:44:99:592,0,532,656,601,1256:8,13,8,15 +chrX 1136619 . T . . END=1136792 GT:DP:GQ:MIN_DP:PL 0/0:48:72:48:0,72,1310 +chrX 1136793 . T G, 647.64 . AS_QUALapprox=|655|0;AS_VarDP=24|29|0;BaseQRankSum=-0.820;DP=55;MQRankSum=2.668;QUALapprox=655;RAW_GT_COUNT=0,1,0;RAW_MQandDP=181757,55;ReadPosRankSum=-0.751;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:24,29,0:53:99:655,0,582,727,667,1394:18,6,17,12 +chrX 1136794 . C . . END=1136908 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,108,1742 +chrX 1136909 . G C, 863.64 . AS_QUALapprox=|871|0;AS_VarDP=32|32|0;BaseQRankSum=-0.234;DP=68;MQRankSum=-2.294;QUALapprox=871;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237511,68;ReadPosRankSum=-1.552;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:32,32,0:64:99:871,0,850,966,947,1913:15,17,15,17 +chrX 1136910 . T . . END=1136953 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 1136954 . T C, 755.64 . AS_QUALapprox=|763|0;AS_VarDP=35|30|0;BaseQRankSum=-1.887;DP=67;MQRankSum=-2.478;QUALapprox=763;RAW_GT_COUNT=0,1,0;RAW_MQandDP=233911,67;ReadPosRankSum=1.462;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:35,30,0:65:99:763,0,972,868,1062,1930:17,18,14,16 +chrX 1136955 . A . . END=1137176 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1137177 . T C, 782.64 . AS_QUALapprox=|790|0;AS_VarDP=36|30|0;BaseQRankSum=-0.307;DP=67;MQRankSum=0.000;QUALapprox=790;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=-1.385;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:36,30,0:66:99:790,0,1013,898,1103,2001:13,23,17,13 +chrX 1137178 . G . . END=1137701 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,111,1661 +chrX 1137702 . C A, 840.64 . AS_QUALapprox=|848|0;AS_VarDP=24|30|0;BaseQRankSum=-0.191;DP=58;MQRankSum=0.000;QUALapprox=848;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-0.758;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:24,30,0:54:99:848,0,652,920,742,1663:11,13,17,13 +chrX 1137703 . A . . END=1137977 GT:DP:GQ:MIN_DP:PL 0/0:51:91:51:0,91,1285 +chrX 1137978 . C G, 1590.06 . AS_QUALapprox=|1604|0;AS_VarDP=0|50|0;DP=51;QUALapprox=1604;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1604,149,0,1604,149,1604:0,0,25,25 +chrX 1137979 . C . . END=1138402 GT:DP:GQ:MIN_DP:PL 0/0:40:39:36:0,39,997 +chrX 1138403 . C . . END=1138403 GT:DP:GQ:MIN_DP:PL 0/0:38:10:38:0,10,1032 +chrX 1138404 . A . . END=1138404 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,105,1575 +chrX 1138405 . T . . END=1138409 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,892 +chrX 1138410 . G . . END=1138410 GT:DP:GQ:MIN_DP:PL 0/0:36:83:36:0,83,1111 +chrX 1138411 . C . . END=1138426 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,837 +chrX 1138427 . T . . END=1138427 GT:DP:GQ:MIN_DP:PL 0/0:42:87:42:0,87,1281 +chrX 1138428 . C . . END=1138428 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,814 +chrX 1138429 . G . . END=1138429 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,114,1710 +chrX 1138430 . T . . END=1138430 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,743 +chrX 1138431 . C . . END=1138431 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,117,1755 +chrX 1138432 . T . . END=1138436 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,809 +chrX 1138437 . T . . END=1138437 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,120,1800 +chrX 1138438 . A . . END=1138438 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,824 +chrX 1138439 . A . . END=1138439 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 1138440 . A . . END=1138442 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,868 +chrX 1138443 . T . . END=1138443 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 1138444 . A . . END=1138455 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,777 +chrX 1138456 . T . . END=1138457 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1138458 . T . . END=1138458 GT:DP:GQ:MIN_DP:PL 0/0:56:0:56:0,0,962 +chrX 1138459 . T . . END=1138460 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1138461 . G . . END=1138465 GT:DP:GQ:MIN_DP:PL 0/0:55:0:55:0,0,788 +chrX 1138466 . C . . END=1138467 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1138468 . C . . END=1138468 GT:DP:GQ:MIN_DP:PL 0/0:61:0:61:0,0,738 +chrX 1138469 . A . . END=1138479 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1138480 . C . . END=1138480 GT:DP:GQ:MIN_DP:PL 0/0:63:0:63:0,0,540 +chrX 1138481 . C . . END=1138500 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 1138501 . C T, 1161.06 . AS_QUALapprox=|1175|0;AS_VarDP=4|43|0;BaseQRankSum=2.099;DP=58;MQRankSum=3.355;QUALapprox=1175;RAW_GT_COUNT=0,0,1;RAW_MQandDP=206800,58;ReadPosRankSum=-1.278;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:4,43,0:47:76:1175,76,0,1186,128,1238:0,4,24,19 +chrX 1138502 . G . . END=1138549 GT:DP:GQ:MIN_DP:PL 0/0:52:53:52:0,53,933 +chrX 1138550 . C T, 1792.64 . AS_QUALapprox=|1800|0;AS_VarDP=28|47|0;BaseQRankSum=2.291;DP=87;MQRankSum=0.000;QUALapprox=1800;RAW_GT_COUNT=0,1,0;RAW_MQandDP=313200,87;ReadPosRankSum=1.068;VarDP=75 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,47,0:75:99:0|1:1138550_C_T:1800,0,953,1884,1094,2978:1138550:15,13,25,22 +chrX 1138551 . G . . END=1138558 GT:DP:GQ:MIN_DP:PL 0/0:76:99:76:0,120,1800 +chrX 1138559 . G A, 1843.64 . AS_QUALapprox=|1851|0;AS_VarDP=32|48|0;BaseQRankSum=2.049;DP=92;MQRankSum=0.000;QUALapprox=1851;RAW_GT_COUNT=0,1,0;RAW_MQandDP=331200,92;ReadPosRankSum=1.986;VarDP=80 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:32,48,0:80:99:0|1:1138550_C_T:1851,0,1118,1947,1262,3209:1138550:19,13,26,22 +chrX 1138560 . G . . END=1138562 GT:DP:GQ:MIN_DP:PL 0/0:78:99:78:0,120,1800 +chrX 1138563 . A G, 1848.64 . AS_QUALapprox=|1856|0;AS_VarDP=35|49|0;BaseQRankSum=1.120;DP=96;MQRankSum=0.000;QUALapprox=1856;RAW_GT_COUNT=0,1,0;RAW_MQandDP=345600,96;ReadPosRankSum=2.784;VarDP=84 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:35,49,0:84:99:0|1:1138550_C_T:1856,0,1242,1961,1388,3349:1138550:22,13,27,22 +chrX 1138564 . G . . END=1138574 GT:DP:GQ:MIN_DP:PL 0/0:83:99:83:0,120,1800 +chrX 1138575 . C T, 1951.64 . AS_QUALapprox=|1959|0;AS_VarDP=38|51|0;BaseQRankSum=0.798;DP=103;MQRankSum=0.000;QUALapprox=1959;RAW_GT_COUNT=0,1,0;RAW_MQandDP=370116,103;ReadPosRankSum=1.259;VarDP=89 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:38,51,0:89:99:0|1:1138550_C_T:1959,0,1346,2073,1499,3572:1138550:23,15,27,24 +chrX 1138576 . C . . END=1138604 GT:DP:GQ:MIN_DP:PL 0/0:90:99:90:0,120,1800 +chrX 1138605 . C T, 762.64 . AS_QUALapprox=|770|0;AS_VarDP=52|39|0;BaseQRankSum=0.571;DP=105;MQRankSum=0.000;QUALapprox=770;RAW_GT_COUNT=0,1,0;RAW_MQandDP=377316,105;ReadPosRankSum=-0.186;VarDP=91 GT:AD:DP:GQ:PL:SB 0/1:52,39,0:91:99:770,0,1734,924,1847,2771:31,21,18,21 +chrX 1138606 . C . . END=1138618 GT:DP:GQ:MIN_DP:PL 0/0:90:99:90:0,120,1800 +chrX 1138619 . G C, 1768.64 . AS_QUALapprox=|1776|0;AS_VarDP=42|48|0;BaseQRankSum=-0.752;DP=102;MQRankSum=0.000;QUALapprox=1776;RAW_GT_COUNT=0,1,0;RAW_MQandDP=366516,102;ReadPosRankSum=0.177;VarDP=90 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:42,48,0:90:99:0|1:1138550_C_T:1776,0,1551,1902,1695,3597:1138550:28,14,21,27 +chrX 1138620 . A . . END=1138640 GT:DP:GQ:MIN_DP:PL 0/0:93:99:93:0,120,1800 +chrX 1138641 . G C, 1638.64 . AS_QUALapprox=|1646|0;AS_VarDP=49|48|0;BaseQRankSum=-0.291;DP=109;MQRankSum=0.000;QUALapprox=1646;RAW_GT_COUNT=0,1,0;RAW_MQandDP=391716,109;ReadPosRankSum=-0.779;VarDP=97 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:49,48,0:97:99:0|1:1138550_C_T:1646,0,1670,1792,1812,3604:1138550:29,20,21,27 +chrX 1138642 . C . . END=1138686 GT:DP:GQ:MIN_DP:PL 0/0:91:99:91:0,120,1800 +chrX 1138687 . G A, 76.64 . AS_QUALapprox=|84|0;AS_VarDP=51|9|0;BaseQRankSum=0.193;DP=74;MQRankSum=0.467;QUALapprox=84;RAW_GT_COUNT=0,1,0;RAW_MQandDP=265032,74;ReadPosRankSum=1.232;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:51,9,0:60:84:84,0,1384,236,1410,1647:28,23,8,1 +chrX 1138688 . G . . END=1138699 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 1138700 . A G, 884.64 . AS_QUALapprox=|892|0;AS_VarDP=22|33|0;BaseQRankSum=0.210;DP=62;MQRankSum=-0.779;QUALapprox=892;RAW_GT_COUNT=0,1,0;RAW_MQandDP=221832,62;ReadPosRankSum=0.103;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:22,33,0:55:99:892,0,510,957,609,1566:10,12,21,12 +chrX 1138701 . C . . END=1138712 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 1138713 . C . . END=1138714 GT:DP:GQ:MIN_DP:PL 0/0:64:0:64:0,0,1330 +chrX 1138715 . T . . END=1138715 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 1138716 . G . . END=1138716 GT:DP:GQ:MIN_DP:PL 0/0:62:0:62:0,0,1281 +chrX 1138717 . T . . END=1138719 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1138720 . A . . END=1138720 GT:DP:GQ:MIN_DP:PL 0/0:60:0:60:0,0,1230 +chrX 1138721 . T . . END=1138721 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1138722 . T . . END=1138724 GT:DP:GQ:MIN_DP:PL 0/0:57:0:57:0,0,1097 +chrX 1138725 . A . . END=1138728 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 1138729 . T . . END=1138735 GT:DP:GQ:MIN_DP:PL 0/0:56:0:56:0,0,1310 +chrX 1138736 . T . . END=1138736 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1138737 . C . . END=1138740 GT:DP:GQ:MIN_DP:PL 0/0:55:0:55:0,0,1385 +chrX 1138741 . C . . END=1138742 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 1138743 . G . . END=1138744 GT:DP:GQ:MIN_DP:PL 0/0:54:0:54:0,0,1369 +chrX 1138745 . T . . END=1138745 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 1138746 . G . . END=1138748 GT:DP:GQ:MIN_DP:PL 0/0:52:6:52:0,6,1408 +chrX 1138749 . G . . END=1139305 GT:DP:GQ:MIN_DP:PL 0/0:57:20:53:0,20,1510 +chrX 1139306 . C T, 911.64 . AS_QUALapprox=|919|0;AS_VarDP=33|33|0;BaseQRankSum=1.079;DP=67;MQRankSum=0.000;QUALapprox=919;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=-0.321;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:33,33,0:66:99:919,0,889,1018,988,2006:14,19,12,21 +chrX 1139307 . C . . END=1139854 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,102,1559 +chrX 1139855 . G T, 1176.64 . AS_QUALapprox=|1184|0;AS_VarDP=29|43|0;BaseQRankSum=-0.471;DP=73;MQRankSum=1.246;QUALapprox=1184;RAW_GT_COUNT=0,1,0;RAW_MQandDP=259778,73;ReadPosRankSum=0.098;VarDP=72 GT:AD:DP:GQ:PL:SB 0/1:29,43,0:72:99:1184,0,713,1270,841,2112:16,13,18,25 +chrX 1139856 . C T, 2877.06 . AS_QUALapprox=|2891|0;AS_VarDP=0|72|0;DP=73;QUALapprox=2891;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259778,73;VarDP=72 GT:AD:DP:GQ:PL:SB 1/1:0,72,0:72:99:2891,217,0,2891,217,2891:0,0,34,38 +chrX 1139857 . C . . END=1139874 GT:DP:GQ:MIN_DP:PL 0/0:73:99:73:0,120,1800 +chrX 1139875 . G A, 2312.06 . AS_QUALapprox=|2326|0;AS_VarDP=0|74|0;DP=78;QUALapprox=2326;RAW_GT_COUNT=0,0,1;RAW_MQandDP=277778,78;VarDP=74 GT:AD:DP:GQ:PL:SB 1/1:0,74,0:74:99:2326,221,0,2326,221,2326:0,0,34,40 +chrX 1139876 . A . . END=1140500 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,103,1384 +chrX 1140501 . C G, 1480.06 . AS_QUALapprox=|1494|0;AS_VarDP=0|48|0;DP=49;QUALapprox=1494;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=48 GT:AD:DP:GQ:PL:SB 1/1:0,48,0:48:99:1494,144,0,1494,144,1494:0,0,24,24 +chrX 1140502 . G . . END=1140553 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,118,1380 +chrX 1140554 . C T, 577.64 . AS_QUALapprox=|585|0;AS_VarDP=28|22|0;BaseQRankSum=0.461;DP=52;MQRankSum=0.000;QUALapprox=585;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=-1.447;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:28,22,0:50:99:585,0,757,668,823,1491:12,16,11,11 +chrX 1140555 . G . . END=1140568 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 1140569 . A G, 2010.06 . AS_QUALapprox=|2024|0;AS_VarDP=0|55|0;DP=55;QUALapprox=2024;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:2024,165,0,2024,165,2024:0,0,25,30 +chrX 1140570 . C . . END=1140992 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1140993 . C G, 2089.06 . AS_QUALapprox=|2103|0;AS_VarDP=1|68|0;BaseQRankSum=2.041;DP=72;MQRankSum=-0.142;QUALapprox=2103;RAW_GT_COUNT=0,0,1;RAW_MQandDP=254627,72;ReadPosRankSum=0.276;VarDP=69 GT:AD:DP:GQ:PL:SB 1/1:1,68,0:69:99:2103,196,0,2105,203,2112:0,1,38,30 +chrX 1140994 . C . . END=1141144 GT:DP:GQ:MIN_DP:PL 0/0:59:87:59:0,87,1564 +chrX 1141145 . A G, 1826.06 . AS_QUALapprox=|1840|0;AS_VarDP=0|58|0;DP=60;QUALapprox=1840;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208079,60;VarDP=58 GT:AD:DP:GQ:PL:SB 1/1:0,58,0:58:99:1840,174,0,1840,174,1840:0,0,29,29 +chrX 1141146 . G . . END=1141202 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 1141203 . G A, 1738.06 . AS_QUALapprox=|1752|0;AS_VarDP=0|53|0;DP=54;QUALapprox=1752;RAW_GT_COUNT=0,0,1;RAW_MQandDP=189829,54;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1752,159,0,1752,159,1752:0,0,21,32 +chrX 1141204 . C . . END=1141233 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 1141234 . C T, 2090.06 . AS_QUALapprox=|2104|0;AS_VarDP=0|47|0;DP=48;QUALapprox=2104;RAW_GT_COUNT=0,0,1;RAW_MQandDP=170602,48;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,47,0:47:99:0|1:1141234_C_T:2104,141,0,2104,141,2104:1141234:0,0,19,28 +chrX 1141235 . G . . END=1141238 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,104,1429 +chrX 1141239 . G C, 2055.06 . AS_QUALapprox=|2069|0;AS_VarDP=0|46|0;DP=47;QUALapprox=2069;RAW_GT_COUNT=0,0,1;RAW_MQandDP=167002,47;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,46,0:46:99:0|1:1141234_C_T:2069,138,0,2069,138,2069:1141234:0,0,18,28 +chrX 1141240 . A . . END=1141264 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,106,1473 +chrX 1141265 . A G, 1974.06 . AS_QUALapprox=|1988|0;AS_VarDP=0|52|0;DP=55;QUALapprox=1988;RAW_GT_COUNT=0,0,1;RAW_MQandDP=195802,55;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1988,156,0,1988,156,1988:0,0,23,29 +chrX 1141266 . T . . END=1141269 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 1141270 . AAGT A, 871.60 . AS_QUALapprox=|879|0;AS_VarDP=29|23|0;BaseQRankSum=-0.466;DP=55;MQRankSum=-0.111;QUALapprox=879;RAW_GT_COUNT=0,1,0;RAW_MQandDP=195802,55;ReadPosRankSum=1.685;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:29,23,0:52:99:879,0,1132,966,1202,2167:21,8,7,16 +chrX 1141274 . A . . END=1141514 GT:DP:GQ:MIN_DP:PL 0/0:65:96:65:0,96,1295 +chrX 1141515 . C T, 695.64 . AS_QUALapprox=|703|0;AS_VarDP=34|28|0;BaseQRankSum=1.332;DP=66;MQRankSum=0.000;QUALapprox=703;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=0.248;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:34,28,0:62:99:703,0,826,804,910,1714:13,21,14,14 +chrX 1141516 . G . . END=1141770 GT:DP:GQ:MIN_DP:PL 0/0:77:77:77:0,77,1186 +chrX 1141771 . A G, 1257.06 . AS_QUALapprox=|1271|0;AS_VarDP=0|38|0;DP=40;QUALapprox=1271;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140000,40;VarDP=38 GT:AD:DP:GQ:PL:SB 1/1:0,38,0:38:99:1271,114,0,1271,114,1271:0,0,18,20 +chrX 1141772 . T . . END=1141891 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,99,1250 +chrX 1141892 . AAC A,AACACAC,AAAACACAC, 808.60 . AS_QUALapprox=|0|85|816|0;AS_VarDP=15|0|0|18|0;BaseQRankSum=-0.128;DP=56;MQRankSum=-0.069;QUALapprox=816;RAW_GT_COUNT=0,1,0;RAW_MQandDP=179328,56;ReadPosRankSum=1.158;VarDP=33 GT:AD:DP:GQ:PL:SB 0/3:15,0,0,18,0:33:99:816,917,2065,731,1862,1836,0,661,675,597,915,2047,1875,685,2058:3,12,10,8 +chrX 1141894 . C *,A, 333.64 . AS_QUALapprox=|0|341|0;AS_VarDP=21|0|15|0;BaseQRankSum=-0.047;DP=56;MQRankSum=0.937;QUALapprox=341;RAW_GT_COUNT=0,1,0;RAW_MQandDP=179328,56;ReadPosRankSum=-0.947;VarDP=36 GT:AD:DP:GQ:PL:SB 0/2:21,0,15,0:36:99:341,499,2066,0,927,866,489,1757,946,1692:11,10,3,12 +chrX 1141895 . A . . END=1142231 GT:DP:GQ:MIN_DP:PL 0/0:19:21:17:0,21,315 +chrX 1142232 . A . . END=1142232 GT:DP:GQ:MIN_DP:PL 0/0:16:13:16:0,13,477 +chrX 1142233 . C . . END=1142233 GT:DP:GQ:MIN_DP:PL 0/0:18:24:18:0,24,360 +chrX 1142234 . A . . END=1142236 GT:DP:GQ:MIN_DP:PL 0/0:18:19:18:0,19,526 +chrX 1142237 . C . . END=1142237 GT:DP:GQ:MIN_DP:PL 0/0:18:24:18:0,24,360 +chrX 1142238 . A . . END=1142238 GT:DP:GQ:MIN_DP:PL 0/0:18:19:18:0,19,536 +chrX 1142239 . C . . END=1142240 GT:DP:GQ:MIN_DP:PL 0/0:17:24:17:0,24,360 +chrX 1142241 . C . . END=1142241 GT:DP:GQ:MIN_DP:PL 0/0:17:16:17:0,16,501 +chrX 1142242 . A . . END=1142242 GT:DP:GQ:MIN_DP:PL 0/0:17:24:17:0,24,360 +chrX 1142243 . C . . END=1142243 GT:DP:GQ:MIN_DP:PL 0/0:17:16:17:0,16,491 +chrX 1142244 . A . . END=1142258 GT:DP:GQ:MIN_DP:PL 0/0:17:24:17:0,24,360 +chrX 1142259 . C . . END=1142259 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,397 +chrX 1142260 . A . . END=1142260 GT:DP:GQ:MIN_DP:PL 0/0:17:27:17:0,27,405 +chrX 1142261 . C . . END=1142263 GT:DP:GQ:MIN_DP:PL 0/0:15:0:15:0,0,348 +chrX 1142264 . A . . END=1142265 GT:DP:GQ:MIN_DP:PL 0/0:15:27:15:0,27,405 +chrX 1142266 . A . . END=1142273 GT:DP:GQ:MIN_DP:PL 0/0:13:0:13:0,0,278 +chrX 1142274 . AC A, 145.64 . AS_QUALapprox=|153|0;AS_VarDP=1|4|0;BaseQRankSum=0.000;DP=7;MQRankSum=1.282;QUALapprox=153;RAW_GT_COUNT=0,1,0;RAW_MQandDP=13210,7;ReadPosRankSum=1.282;VarDP=5 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:1,4,0:5:11:0|1:1142274_AC_A:153,0,11,156,23,179:1142274:0,1,1,3 +chrX 1142276 . A . . END=1142279 GT:DP:GQ:MIN_DP:PL 0/0:6:3:6:0,3,45 +chrX 1142280 . C G, 145.67 . AS_QUALapprox=|153|0;AS_VarDP=1|4|0;DP=7;MQRankSum=1.282;QUALapprox=153;RAW_GT_COUNT=0,1,0;RAW_MQandDP=13003,7;VarDP=5 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:1,4,0:5:11:0|1:1142274_AC_A:153,0,11,156,23,179:1142274:0,1,1,3 +chrX 1142281 . A . . END=1142510 GT:DP:GQ:MIN_DP:PL 0/0:4:0:4:0,0,0 +chrX 1142511 . A G, 81.83 . AS_QUALapprox=|95|0;AS_VarDP=0|3|0;DP=3;QUALapprox=95;RAW_GT_COUNT=0,0,1;RAW_MQandDP=6157,3;VarDP=3 GT:AD:DP:GQ:PL:SB 1/1:0,3,0:3:9:95,9,0,95,9,95:0,0,3,0 +chrX 1142512 . A . . END=1142538 GT:DP:GQ:MIN_DP:PL 0/0:4:0:4:0,0,45 +chrX 1142539 . A . . END=1142539 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,243 +chrX 1142540 . G . . END=1142540 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,209 +chrX 1142541 . C . . END=1142562 GT:DP:GQ:MIN_DP:PL 0/0:10:21:8:0,21,233 +chrX 1142563 . A . . END=1142563 GT:DP:GQ:MIN_DP:PL 0/0:12:11:12:0,11,337 +chrX 1142564 . C . . END=1142573 GT:DP:GQ:MIN_DP:PL 0/0:15:30:13:0,30,338 +chrX 1142574 . AACACACAC A,AACACACACACACACAC, 871.02 . AS_QUALapprox=|526|385|0;AS_VarDP=0|13|9|0;DP=26;QUALapprox=888;RAW_GT_COUNT=0,0,1;RAW_MQandDP=83914,26;VarDP=22 GT:AD:DP:GQ:PL:SB 1/2:0,13,9,0:22:99:888,362,402,529,0,503,897,405,535,933:0,0,7,15 +chrX 1142583 . A . . END=1142833 GT:DP:GQ:MIN_DP:PL 0/0:51:83:51:0,83,923 +chrX 1142834 . T C, 1946.06 . AS_QUALapprox=|1960|0;AS_VarDP=0|47|0;DP=47;QUALapprox=1960;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118255,47;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,47,0:47:99:0|1:1142834_T_C:1960,141,0,1960,141,1960:1142834:0,0,24,23 +chrX 1142835 . C . . END=1142845 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,105,1575 +chrX 1142846 . G A, 1782.06 . AS_QUALapprox=|1796|0;AS_VarDP=0|42|0;DP=42;QUALapprox=1796;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97616,42;VarDP=42 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,42,0:42:99:0|1:1142834_T_C:1796,126,0,1796,126,1796:1142834:0,0,22,20 +chrX 1142847 . C . . END=1142915 GT:DP:GQ:MIN_DP:PL 0/0:30:41:30:0,41,655 +chrX 1142916 . A AACACAC, 198.60 . AS_QUALapprox=|206|0;AS_VarDP=1|5|0;BaseQRankSum=0.000;DP=21;MQRankSum=0.967;QUALapprox=206;RAW_GT_COUNT=0,1,0;RAW_MQandDP=26689,21;ReadPosRankSum=0.674;VarDP=6 GT:AD:DP:GQ:PL:SB 0/1:1,5,0:6:28:206,0,28,210,43,253:1,0,0,5 +chrX 1142917 . A . . END=1142918 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,680 +chrX 1142919 . A . . END=1142947 GT:DP:GQ:MIN_DP:PL 0/0:27:42:27:0,42,630 +chrX 1142948 . C . . END=1142948 GT:DP:GQ:MIN_DP:PL 0/0:24:3:24:0,3,665 +chrX 1142949 . A . . END=1142953 GT:DP:GQ:MIN_DP:PL 0/0:23:28:21:0,28,651 +chrX 1142954 . C . . END=1142954 GT:DP:GQ:MIN_DP:PL 0/0:22:17:22:0,17,615 +chrX 1142955 . A . . END=1142955 GT:DP:GQ:MIN_DP:PL 0/0:22:31:22:0,31,634 +chrX 1142956 . C . . END=1142956 GT:DP:GQ:MIN_DP:PL 0/0:20:1:20:0,1,556 +chrX 1142957 . A . . END=1142957 GT:DP:GQ:MIN_DP:PL 0/0:20:25:20:0,25,606 +chrX 1142958 . C . . END=1142959 GT:DP:GQ:MIN_DP:PL 0/0:19:0:19:0,0,70 +chrX 1142960 . A . . END=1142960 GT:DP:GQ:MIN_DP:PL 0/0:20:25:20:0,25,565 +chrX 1142961 . T . . END=1142962 GT:DP:GQ:MIN_DP:PL 0/0:21:0:21:0,0,432 +chrX 1142963 . A . . END=1142963 GT:DP:GQ:MIN_DP:PL 0/0:19:32:19:0,32,601 +chrX 1142964 . C . . END=1142964 GT:DP:GQ:MIN_DP:PL 0/0:18:19:18:0,19,526 +chrX 1142965 . C . . END=1142966 GT:DP:GQ:MIN_DP:PL 0/0:19:48:19:0,48,720 +chrX 1142967 . T . . END=1142967 GT:DP:GQ:MIN_DP:PL 0/0:18:0:18:0,0,0 +chrX 1142968 . A . . END=1142968 GT:DP:GQ:MIN_DP:PL 0/0:18:48:18:0,48,720 +chrX 1142969 . G . . END=1142970 GT:DP:GQ:MIN_DP:PL 0/0:18:16:18:0,16,465 +chrX 1142971 . C . . END=1142971 GT:DP:GQ:MIN_DP:PL 0/0:19:32:19:0,32,591 +chrX 1142972 . T . . END=1142972 GT:DP:GQ:MIN_DP:PL 0/0:18:0:18:0,0,487 +chrX 1142973 . C . . END=1142973 GT:DP:GQ:MIN_DP:PL 0/0:17:51:17:0,51,551 +chrX 1142974 . A . . END=1142974 GT:DP:GQ:MIN_DP:PL 0/0:16:19:16:0,19,448 +chrX 1142975 . C . . END=1142975 GT:DP:GQ:MIN_DP:PL 0/0:19:22:19:0,22,541 +chrX 1142976 . C . . END=1142976 GT:DP:GQ:MIN_DP:PL 0/0:16:13:16:0,13,466 +chrX 1142977 . A . . END=1142979 GT:DP:GQ:MIN_DP:PL 0/0:17:34:16:0,34,497 +chrX 1142980 . T . . END=1142980 GT:DP:GQ:MIN_DP:PL 0/0:18:15:18:0,15,477 +chrX 1142981 . A . . END=1143033 GT:DP:GQ:MIN_DP:PL 0/0:16:22:11:0,22,317 +chrX 1143034 . G . . END=1143034 GT:DP:GQ:MIN_DP:PL 0/0:10:16:10:0,16,289 +chrX 1143035 . A . . END=1143045 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,268 +chrX 1143046 . G . . END=1143512 GT:DP:GQ:MIN_DP:PL 0/0:2:0:2:0,0,0 +chrX 1143513 . C . . END=1143514 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,223 +chrX 1143515 . T . . END=1143517 GT:DP:GQ:MIN_DP:PL 0/0:5:0:5:0,0,104 +chrX 1143518 . G . . END=1143520 GT:DP:GQ:MIN_DP:PL 0/0:8:24:8:0,24,228 +chrX 1143521 . A . . END=1143521 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,199 +chrX 1143522 . C . . END=1143523 GT:DP:GQ:MIN_DP:PL 0/0:8:24:8:0,24,248 +chrX 1143524 . G . . END=1143524 GT:DP:GQ:MIN_DP:PL 0/0:8:9:8:0,9,189 +chrX 1143525 . A . . END=1143526 GT:DP:GQ:MIN_DP:PL 0/0:8:24:8:0,24,238 +chrX 1143527 . C . . END=1143527 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,189 +chrX 1143528 . G . . END=1143529 GT:DP:GQ:MIN_DP:PL 0/0:8:24:8:0,24,238 +chrX 1143530 . G . . END=1143530 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,209 +chrX 1143531 . A . . END=1143531 GT:DP:GQ:MIN_DP:PL 0/0:10:27:10:0,27,405 +chrX 1143532 . C . . END=1143533 GT:DP:GQ:MIN_DP:PL 0/0:8:2:8:0,2,178 +chrX 1143534 . C . . END=1143534 GT:DP:GQ:MIN_DP:PL 0/0:8:24:8:0,24,258 +chrX 1143535 . C . . END=1143537 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,115 +chrX 1143538 . C . . END=1143539 GT:DP:GQ:MIN_DP:PL 0/0:10:21:10:0,21,315 +chrX 1143540 . C . . END=1143542 GT:DP:GQ:MIN_DP:PL 0/0:9:0:9:0,0,43 +chrX 1143543 . A . . END=1143543 GT:DP:GQ:MIN_DP:PL 0/0:10:21:10:0,21,315 +chrX 1143544 . C . . END=1143544 GT:DP:GQ:MIN_DP:PL 0/0:9:13:9:0,13,244 +chrX 1143545 . A . . END=1143573 GT:DP:GQ:MIN_DP:PL 0/0:12:24:11:0,24,360 +chrX 1143574 . C . . END=1143574 GT:DP:GQ:MIN_DP:PL 0/0:13:0:13:0,0,283 +chrX 1143575 . A . . END=1143575 GT:DP:GQ:MIN_DP:PL 0/0:13:30:13:0,30,450 +chrX 1143576 . C . . END=1143576 GT:DP:GQ:MIN_DP:PL 0/0:11:19:11:0,19,293 +chrX 1143577 . A . . END=1143577 GT:DP:GQ:MIN_DP:PL 0/0:12:30:12:0,30,450 +chrX 1143578 . C . . END=1143578 GT:DP:GQ:MIN_DP:PL 0/0:11:8:11:0,8,293 +chrX 1143579 . A . . END=1143581 GT:DP:GQ:MIN_DP:PL 0/0:12:30:12:0,30,450 +chrX 1143582 . C . . END=1143582 GT:DP:GQ:MIN_DP:PL 0/0:9:0:9:0,0,223 +chrX 1143583 . A . . END=1143587 GT:DP:GQ:MIN_DP:PL 0/0:10:24:10:0,24,238 +chrX 1143588 . G . . END=1143590 GT:DP:GQ:MIN_DP:PL 0/0:9:0:9:0,0,223 +chrX 1143591 . C . . END=1143592 GT:DP:GQ:MIN_DP:PL 0/0:11:21:11:0,21,315 +chrX 1143593 . C . . END=1143701 GT:DP:GQ:MIN_DP:PL 0/0:3:0:3:0,0,0 +chrX 1143702 . C . . END=1143702 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,315 +chrX 1143703 . A . . END=1143703 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,199 +chrX 1143704 . C . . END=1143704 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,315 +chrX 1143705 . A . . END=1143705 GT:DP:GQ:MIN_DP:PL 0/0:10:16:10:0,16,258 +chrX 1143706 . C . . END=1143718 GT:DP:GQ:MIN_DP:PL 0/0:11:27:10:0,27,322 +chrX 1143719 . A . . END=1143721 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,242 +chrX 1143722 . G . . END=1143722 GT:DP:GQ:MIN_DP:PL 0/0:11:33:11:0,33,342 +chrX 1143723 . A . . END=1143723 GT:DP:GQ:MIN_DP:PL 0/0:11:8:11:0,8,272 +chrX 1143724 . C . . END=1143725 GT:DP:GQ:MIN_DP:PL 0/0:11:33:11:0,33,332 +chrX 1143726 . A . . END=1143726 GT:DP:GQ:MIN_DP:PL 0/0:11:18:11:0,18,262 +chrX 1143727 . C . . END=1143728 GT:DP:GQ:MIN_DP:PL 0/0:12:36:12:0,36,367 +chrX 1143729 . G . . END=1143729 GT:DP:GQ:MIN_DP:PL 0/0:11:19:11:0,19,303 +chrX 1143730 . A . . END=1143731 GT:DP:GQ:MIN_DP:PL 0/0:12:36:12:0,36,357 +chrX 1143732 . T . . END=1143732 GT:DP:GQ:MIN_DP:PL 0/0:11:8:11:0,8,303 +chrX 1143733 . C . . END=1143760 GT:DP:GQ:MIN_DP:PL 0/0:18:25:13:0,25,387 +chrX 1143761 . G . . END=1143761 GT:DP:GQ:MIN_DP:PL 0/0:20:0:20:0,0,347 +chrX 1143762 . T . . END=1143806 GT:DP:GQ:MIN_DP:PL 0/0:27:36:22:0,36,705 +chrX 1143807 . T . . END=1143807 GT:DP:GQ:MIN_DP:PL 0/0:29:0:29:0,0,741 +chrX 1143808 . C . . END=1143811 GT:DP:GQ:MIN_DP:PL 0/0:33:58:33:0,58,948 +chrX 1143812 . AACACACACAC A, 157.60 . AS_QUALapprox=|165|0;AS_VarDP=9|5|0;BaseQRankSum=-0.303;DP=25;MQRankSum=0.260;QUALapprox=165;RAW_GT_COUNT=0,1,0;RAW_MQandDP=37276,25;ReadPosRankSum=-0.398;VarDP=14 GT:AD:DP:GQ:PL:SB 0/1:9,5,0:14:99:165,0,242,190,258,448:4,5,3,2 +chrX 1143823 . A . . END=1143849 GT:DP:GQ:MIN_DP:PL 0/0:38:57:38:0,57,855 +chrX 1143850 . C . . END=1143850 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,664 +chrX 1143851 . A . . END=1143851 GT:DP:GQ:MIN_DP:PL 0/0:38:78:38:0,78,1170 +chrX 1143852 . C . . END=1143854 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,590 +chrX 1143855 . A . . END=1143858 GT:DP:GQ:MIN_DP:PL 0/0:28:50:28:0,50,679 +chrX 1143859 . A . . END=1143861 GT:DP:GQ:MIN_DP:PL 0/0:29:0:29:0,0,659 +chrX 1143862 . A . . END=1143862 GT:DP:GQ:MIN_DP:PL 0/0:27:78:27:0,78,1170 +chrX 1143863 . T . . END=1143865 GT:DP:GQ:MIN_DP:PL 0/0:27:0:27:0,0,564 +chrX 1143866 . C . . END=1143868 GT:DP:GQ:MIN_DP:PL 0/0:27:35:26:0,35,679 +chrX 1143869 . T . . END=1143869 GT:DP:GQ:MIN_DP:PL 0/0:26:18:26:0,18,613 +chrX 1143870 . A . . END=1143902 GT:DP:GQ:MIN_DP:PL 0/0:23:31:20:0,31,495 +chrX 1143903 . C . . END=1143903 GT:DP:GQ:MIN_DP:PL 0/0:16:13:16:0,13,406 +chrX 1143904 . T . . END=1143909 GT:DP:GQ:MIN_DP:PL 0/0:17:24:14:0,24,360 +chrX 1143910 . C . . END=1143910 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,287 +chrX 1143911 . C . . END=1143911 GT:DP:GQ:MIN_DP:PL 0/0:13:24:13:0,24,360 +chrX 1143912 . A . . END=1143917 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,270 +chrX 1143918 . C . . END=1143918 GT:DP:GQ:MIN_DP:PL 0/0:10:21:10:0,21,315 +chrX 1143919 . A . . END=1143929 GT:DP:GQ:MIN_DP:PL 0/0:7:0:7:0,0,153 +chrX 1143930 . G . . END=1143937 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,233 +chrX 1143938 . G . . END=1143938 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,209 +chrX 1143939 . C . . END=1143949 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,223 +chrX 1143950 . C . . END=1143954 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,144 +chrX 1143955 . A . . END=1144230 GT:DP:GQ:MIN_DP:PL 0/0:39:30:14:0,30,437 +chrX 1144231 . A C, 1115.64 . AS_QUALapprox=|1123|0;AS_VarDP=27|30|0;BaseQRankSum=-0.484;DP=59;MQRankSum=-0.765;QUALapprox=1123;RAW_GT_COUNT=0,1,0;RAW_MQandDP=204103,59;ReadPosRankSum=-0.384;VarDP=57 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,30,0:57:99:0|1:1144231_A_C:1123,0,963,1203,1052,2256:1144231:13,14,11,19 +chrX 1144232 . A . . END=1144248 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1144249 . A C, 1087.64 . AS_QUALapprox=|1095|0;AS_VarDP=26|29|0;BaseQRankSum=1.251;DP=56;MQRankSum=0.131;QUALapprox=1095;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194199,56;ReadPosRankSum=-0.107;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,29,0:55:99:0|1:1144231_A_C:1095,0,921,1172,1007,2179:1144231:11,15,12,17 +chrX 1144250 . C . . END=1144395 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,109,1519 +chrX 1144396 . G A, 1072.64 . AS_QUALapprox=|1080|0;AS_VarDP=26|39|0;BaseQRankSum=-0.928;DP=66;MQRankSum=0.000;QUALapprox=1080;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=0.757;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:26,39,0:65:99:1080,0,678,1158,796,1954:11,15,19,20 +chrX 1144397 . G . . END=1144476 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 1144477 . G A, 1190.64 . AS_QUALapprox=|1198|0;AS_VarDP=33|44|0;BaseQRankSum=-0.150;DP=78;MQRankSum=0.000;QUALapprox=1198;RAW_GT_COUNT=0,1,0;RAW_MQandDP=280800,78;ReadPosRankSum=0.103;VarDP=77 GT:AD:DP:GQ:PL:SB 0/1:33,44,0:77:99:1198,0,846,1297,978,2275:18,15,26,18 +chrX 1144478 . T . . END=1144682 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,110,1800 +chrX 1144683 . C T, 805.64 . AS_QUALapprox=|813|0;AS_VarDP=28|30|0;BaseQRankSum=-0.331;DP=59;MQRankSum=0.000;QUALapprox=813;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=0.794;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:28,30,0:58:99:813,0,769,897,859,1756:18,10,15,15 +chrX 1144684 . G . . END=1145082 GT:DP:GQ:MIN_DP:PL 0/0:60:85:60:0,85,1788 +chrX 1145083 . C CA, 1148.03 . AS_QUALapprox=|1162|0;AS_VarDP=0|52|0;DP=70;QUALapprox=1162;RAW_GT_COUNT=0,0,1;RAW_MQandDP=251316,70;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1162,154,0,1162,154,1162:0,0,24,28 +chrX 1145084 . A . . END=1145233 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,114,1710 +chrX 1145234 . G A, 549.64 . AS_QUALapprox=|557|0;AS_VarDP=23|21|0;BaseQRankSum=0.235;DP=46;MQRankSum=0.000;QUALapprox=557;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=1.352;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:23,21,0:44:99:557,0,617,627,680,1307:14,9,10,11 +chrX 1145235 . A . . END=1145287 GT:DP:GQ:MIN_DP:PL 0/0:38:87:38:0,87,1113 +chrX 1145288 . T TCTC, 868.60 . AS_QUALapprox=|876|0;AS_VarDP=16|22|0;BaseQRankSum=-0.445;DP=41;MQRankSum=0.000;QUALapprox=876;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147600,41;ReadPosRankSum=0.459;VarDP=38 GT:AD:DP:GQ:PL:SB 0/1:16,22,0:38:99:876,0,565,924,631,1555:7,9,12,10 +chrX 1145289 . C . . END=1145456 GT:DP:GQ:MIN_DP:PL 0/0:58:90:58:0,90,1286 +chrX 1145457 . G A, 849.64 . AS_QUALapprox=|857|0;AS_VarDP=26|32|0;BaseQRankSum=0.803;DP=62;MQRankSum=0.000;QUALapprox=857;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=0.986;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:26,32,0:58:99:857,0,639,935,735,1671:18,8,20,12 +chrX 1145458 . T . . END=1145557 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 1145558 . C T, 1172.64 . AS_QUALapprox=|1180|0;AS_VarDP=33|31|0;BaseQRankSum=2.489;DP=64;MQRankSum=0.000;QUALapprox=1180;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=1.156;VarDP=64 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:33,31,0:64:99:0|1:1145558_C_T:1180,0,1260,1279,1353,2632:1145558:19,14,15,16 +chrX 1145559 . G A, 1172.64 . AS_QUALapprox=|1180|0;AS_VarDP=33|31|0;BaseQRankSum=1.116;DP=64;MQRankSum=0.000;QUALapprox=1180;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=1.150;VarDP=64 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:33,31,0:64:99:0|1:1145558_C_T:1180,0,1260,1279,1353,2632:1145558:19,14,15,16 +chrX 1145560 . G . . END=1145726 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,99,1767 +chrX 1145727 . C T, 571.64 . AS_QUALapprox=|579|0;AS_VarDP=29|22|0;BaseQRankSum=2.708;DP=54;MQRankSum=0.000;QUALapprox=579;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=0.267;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:29,22,0:51:99:579,0,665,664,731,1395:13,16,8,14 +chrX 1145728 . G . . END=1146060 GT:DP:GQ:MIN_DP:PL 0/0:59:90:59:0,90,1667 +chrX 1146061 . C A, 944.64 . AS_QUALapprox=|952|0;AS_VarDP=34|35|0;BaseQRankSum=1.250;DP=69;MQRankSum=0.000;QUALapprox=952;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=-0.240;VarDP=69 GT:AD:DP:GQ:PL:SB 0/1:34,35,0:69:99:952,0,894,1055,999,2054:19,15,16,19 +chrX 1146062 . C . . END=1146296 GT:DP:GQ:MIN_DP:PL 0/0:16:25:13:0,25,346 +chrX 1146297 . T . . END=1146297 GT:DP:GQ:MIN_DP:PL 0/0:13:4:13:0,4,301 +chrX 1146298 . A . . END=1146327 GT:DP:GQ:MIN_DP:PL 0/0:13:27:13:0,27,382 +chrX 1146328 . C . . END=1146328 GT:DP:GQ:MIN_DP:PL 0/0:13:14:13:0,14,321 +chrX 1146329 . G . . END=1146359 GT:DP:GQ:MIN_DP:PL 0/0:20:25:13:0,25,501 +chrX 1146360 . C . . END=1146360 GT:DP:GQ:MIN_DP:PL 0/0:21:4:21:0,4,561 +chrX 1146361 . C . . END=1146376 GT:DP:GQ:MIN_DP:PL 0/0:26:50:26:0,50,678 +chrX 1146377 . C . . END=1146377 GT:DP:GQ:MIN_DP:PL 0/0:29:3:29:0,3,750 +chrX 1146378 . G . . END=1146405 GT:DP:GQ:MIN_DP:PL 0/0:35:58:35:0,58,928 +chrX 1146406 . C . . END=1146458 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,82 +chrX 1146459 . C . . END=1146491 GT:DP:GQ:MIN_DP:PL 0/0:27:33:21:0,33,495 +chrX 1146492 . A C, 191.68 . AS_QUALapprox=|199|0;AS_VarDP=7|10|0;BaseQRankSum=0.882;DP=19;MQRankSum=-2.010;QUALapprox=199;RAW_GT_COUNT=0,1,0;RAW_MQandDP=16301,19;ReadPosRankSum=0.098;VarDP=17 GT:AD:DP:GQ:PL:SB 0/1:7,10,0:17:10:199,0,10,209,39,248:3,4,5,5 +chrX 1146493 . C . . END=1146506 GT:DP:GQ:MIN_DP:PL 0/0:14:27:12:0,27,405 +chrX 1146507 . T . . END=1146748 GT:DP:GQ:MIN_DP:PL 0/0:4:0:4:0,0,0 +chrX 1146749 . C . . END=1146749 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,193 +chrX 1146750 . T . . END=1146752 GT:DP:GQ:MIN_DP:PL 0/0:5:0:5:0,0,15 +chrX 1146753 . C . . END=1146753 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,193 +chrX 1146754 . A . . END=1146754 GT:DP:GQ:MIN_DP:PL 0/0:5:0:5:0,0,15 +chrX 1146755 . C . . END=1146757 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,193 +chrX 1146758 . G . . END=1146758 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,178 +chrX 1146759 . G . . END=1146792 GT:DP:GQ:MIN_DP:PL 0/0:11:24:9:0,24,258 +chrX 1146793 . T . . END=1146793 GT:DP:GQ:MIN_DP:PL 0/0:26:9:26:0,9,714 +chrX 1146794 . C . . END=1146883 GT:DP:GQ:MIN_DP:PL 0/0:22:31:20:0,31,635 +chrX 1146884 . A . . END=1146884 GT:DP:GQ:MIN_DP:PL 0/0:15:0:15:0,0,143 +chrX 1146885 . C . . END=1146898 GT:DP:GQ:MIN_DP:PL 0/0:17:39:16:0,39,467 +chrX 1146899 . T . . END=1146899 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,397 +chrX 1146900 . C . . END=1146900 GT:DP:GQ:MIN_DP:PL 0/0:16:39:16:0,39,585 +chrX 1146901 . A . . END=1146901 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,407 +chrX 1146902 . C . . END=1146925 GT:DP:GQ:MIN_DP:PL 0/0:16:24:10:0,24,348 +chrX 1146926 . T . . END=1146928 GT:DP:GQ:MIN_DP:PL 0/0:10:18:10:0,18,270 +chrX 1146929 . G . . END=1146932 GT:DP:GQ:MIN_DP:PL 0/0:12:21:12:0,21,315 +chrX 1146933 . A . . END=1146933 GT:DP:GQ:MIN_DP:PL 0/0:9:0:9:0,0,213 +chrX 1146934 . C . . END=1147014 GT:DP:GQ:MIN_DP:PL 0/0:10:21:8:0,21,223 +chrX 1147015 . A . . END=1147015 GT:DP:GQ:MIN_DP:PL 0/0:13:0:13:0,0,313 +chrX 1147016 . T . . END=1147035 GT:DP:GQ:MIN_DP:PL 0/0:14:22:12:0,22,348 +chrX 1147036 . T . . END=1147036 GT:DP:GQ:MIN_DP:PL 0/0:15:0:15:0,0,352 +chrX 1147037 . T . . END=1147037 GT:DP:GQ:MIN_DP:PL 0/0:15:36:15:0,36,540 +chrX 1147038 . C . . END=1147038 GT:DP:GQ:MIN_DP:PL 0/0:15:6:15:0,6,373 +chrX 1147039 . T . . END=1147078 GT:DP:GQ:MIN_DP:PL 0/0:12:22:9:0,22,303 +chrX 1147079 . C . . END=1147079 GT:DP:GQ:MIN_DP:PL 0/0:10:5:10:0,5,248 +chrX 1147080 . C . . END=1147105 GT:DP:GQ:MIN_DP:PL 0/0:13:33:13:0,33,352 +chrX 1147106 . T . . END=1147106 GT:DP:GQ:MIN_DP:PL 0/0:12:1:12:0,1,328 +chrX 1147107 . A . . END=1147127 GT:DP:GQ:MIN_DP:PL 0/0:15:33:12:0,33,332 +chrX 1147128 . A . . END=1147128 GT:DP:GQ:MIN_DP:PL 0/0:18:19:18:0,19,445 +chrX 1147129 . C . . END=1147239 GT:DP:GQ:MIN_DP:PL 0/0:27:45:27:0,45,476 +chrX 1147240 . C . . END=1147241 GT:DP:GQ:MIN_DP:PL 0/0:26:0:26:0,0,461 +chrX 1147242 . C . . END=1147274 GT:DP:GQ:MIN_DP:PL 0/0:29:64:29:0,64,797 +chrX 1147275 . C . . END=1147275 GT:DP:GQ:MIN_DP:PL 0/0:24:12:24:0,12,605 +chrX 1147276 . C . . END=1147303 GT:DP:GQ:MIN_DP:PL 0/0:28:51:28:0,51,769 +chrX 1147304 . G . . END=1147304 GT:DP:GQ:MIN_DP:PL 0/0:29:18:29:0,18,789 +chrX 1147305 . G . . END=1147337 GT:DP:GQ:MIN_DP:PL 0/0:32:37:30:0,37,750 +chrX 1147338 . C A, 427.64 . AS_QUALapprox=|435|0;AS_VarDP=23|12|0;BaseQRankSum=1.482;DP=35;MQRankSum=0.174;QUALapprox=435;RAW_GT_COUNT=0,1,0;RAW_MQandDP=115446,35;ReadPosRankSum=-2.795;VarDP=35 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,12,0:35:99:0|1:1147338_C_A:435,0,930,504,966,1470:1147338:13,10,8,4 +chrX 1147339 . C T, 424.64 . AS_QUALapprox=|432|0;AS_VarDP=24|12|0;BaseQRankSum=1.921;DP=36;MQRankSum=0.121;QUALapprox=432;RAW_GT_COUNT=0,1,0;RAW_MQandDP=119046,36;ReadPosRankSum=-2.347;VarDP=36 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,12,0:36:99:0|1:1147338_C_A:432,0,972,504,1008,1512:1147338:14,10,8,4 +chrX 1147340 . C . . END=1147350 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1485 +chrX 1147351 . C T, 637.64 . AS_QUALapprox=|645|0;AS_VarDP=23|17|0;BaseQRankSum=3.105;DP=40;MQRankSum=0.661;QUALapprox=645;RAW_GT_COUNT=0,1,0;RAW_MQandDP=133446,40;ReadPosRankSum=-1.688;VarDP=40 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,17,0:40:99:0|1:1147338_C_A:645,0,915,714,966,1680:1147338:12,11,12,5 +chrX 1147352 . A . . END=1147352 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,105,1575 +chrX 1147353 . G C, 637.64 . AS_QUALapprox=|645|0;AS_VarDP=23|17|0;BaseQRankSum=-0.723;DP=40;MQRankSum=0.661;QUALapprox=645;RAW_GT_COUNT=0,1,0;RAW_MQandDP=133446,40;ReadPosRankSum=-2.281;VarDP=40 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,17,0:40:99:0|1:1147338_C_A:645,0,915,714,966,1680:1147338:12,11,12,5 +chrX 1147354 . G . . END=1147372 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,111,1236 +chrX 1147373 . C A, 869.64 . AS_QUALapprox=|877|0;AS_VarDP=27|23|0;BaseQRankSum=2.967;DP=51;MQRankSum=0.129;QUALapprox=877;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169269,51;ReadPosRankSum=-0.814;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,23,0:50:99:0|1:1147338_C_A:877,0,943,952,1013,1965:1147338:16,11,14,9 +chrX 1147374 . C . . END=1147404 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,119,1498 +chrX 1147405 . C T, 1140.64 . AS_QUALapprox=|1148|0;AS_VarDP=23|29|0;BaseQRankSum=1.345;DP=53;MQRankSum=-0.410;QUALapprox=1148;RAW_GT_COUNT=0,1,0;RAW_MQandDP=184704,53;ReadPosRankSum=0.852;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,29,0:52:99:0|1:1147338_C_A:1148,0,878,1218,966,2183:1147338:12,11,18,11 +chrX 1147406 . G . . END=1147410 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 1147411 . C G, 1172.64 . AS_QUALapprox=|1180|0;AS_VarDP=23|30|0;BaseQRankSum=1.182;DP=54;MQRankSum=-0.381;QUALapprox=1180;RAW_GT_COUNT=0,1,0;RAW_MQandDP=188304,54;ReadPosRankSum=0.885;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,30,0:53:99:0|1:1147338_C_A:1180,0,875,1249,966,2215:1147338:13,10,18,12 +chrX 1147412 . A . . END=1147438 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1147439 . T C, 1317.64 . AS_QUALapprox=|1325|0;AS_VarDP=27|35|0;BaseQRankSum=0.778;DP=65;MQRankSum=-1.229;QUALapprox=1325;RAW_GT_COUNT=0,1,0;RAW_MQandDP=228800,65;ReadPosRankSum=1.284;VarDP=62 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,35,0:62:99:0|1:1147338_C_A:1325,0,946,1407,1051,2457:1147338:14,13,20,15 +chrX 1147440 . C . . END=1147522 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 1147523 . G C, 1853.06 . AS_QUALapprox=|1867|0;AS_VarDP=0|56|0;DP=56;QUALapprox=1867;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1867,168,0,1867,168,1867:0,0,21,35 +chrX 1147524 . T . . END=1147666 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 1147667 . C T, 1085.64 . AS_QUALapprox=|1093|0;AS_VarDP=32|42|0;BaseQRankSum=-0.268;DP=75;MQRankSum=0.000;QUALapprox=1093;RAW_GT_COUNT=0,1,0;RAW_MQandDP=270000,75;ReadPosRankSum=-0.207;VarDP=74 GT:AD:DP:GQ:PL:SB 0/1:32,42,0:74:99:1093,0,806,1189,931,2121:17,15,24,18 +chrX 1147668 . A . . END=1147734 GT:DP:GQ:MIN_DP:PL 0/0:74:99:74:0,120,1800 +chrX 1147735 . G A, 865.64 . AS_QUALapprox=|873|0;AS_VarDP=33|32|0;BaseQRankSum=1.329;DP=66;MQRankSum=0.000;QUALapprox=873;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=-0.026;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:33,32,0:65:99:873,0,852,971,948,1920:18,15,16,16 +chrX 1147736 . T . . END=1147882 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 1147883 . C G, 3183.06 . AS_QUALapprox=|3197|0;AS_VarDP=0|72|0;DP=72;QUALapprox=3197;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;VarDP=72 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,72,0:72:99:0|1:1147883_C_G:3197,217,0,3197,217,3197:1147883:0,0,38,34 +chrX 1147884 . A C, 3183.06 . AS_QUALapprox=|3197|0;AS_VarDP=0|72|0;DP=72;QUALapprox=3197;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;VarDP=72 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,72,0:72:99:0|1:1147883_C_G:3197,217,0,3197,217,3197:1147883:0,0,38,34 +chrX 1147885 . C . . END=1147907 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,120,1800 +chrX 1147908 . G A, 936.64 . AS_QUALapprox=|944|0;AS_VarDP=36|36|0;BaseQRankSum=-0.484;DP=74;MQRankSum=0.000;QUALapprox=944;RAW_GT_COUNT=0,1,0;RAW_MQandDP=266400,74;ReadPosRankSum=1.160;VarDP=72 GT:AD:DP:GQ:PL:SB 0/1:36,36,0:72:99:944,0,950,1052,1058,2110:22,14,18,18 +chrX 1147909 . G . . END=1147941 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 1147942 . G A, 850.64 . AS_QUALapprox=|858|0;AS_VarDP=35|31|0;BaseQRankSum=1.599;DP=70;MQRankSum=0.000;QUALapprox=858;RAW_GT_COUNT=0,1,0;RAW_MQandDP=252000,70;ReadPosRankSum=0.617;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:35,31,0:66:99:858,0,948,963,1041,2004:21,14,21,10 +chrX 1147943 . G . . END=1147977 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1147978 . C T, 1390.64 . AS_QUALapprox=|1398|0;AS_VarDP=34|36|0;BaseQRankSum=-0.963;DP=74;MQRankSum=0.000;QUALapprox=1398;RAW_GT_COUNT=0,1,0;RAW_MQandDP=266400,74;ReadPosRankSum=-0.853;VarDP=70 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:34,36,0:70:99:0|1:1147978_C_T:1398,0,1308,1501,1416,2917:1147978:22,12,23,13 +chrX 1147979 . C G, 1390.64 . AS_QUALapprox=|1398|0;AS_VarDP=34|36|0;BaseQRankSum=-0.382;DP=73;MQRankSum=0.000;QUALapprox=1398;RAW_GT_COUNT=0,1,0;RAW_MQandDP=262800,73;ReadPosRankSum=-0.735;VarDP=70 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:34,36,0:70:99:0|1:1147978_C_T:1398,0,1308,1501,1416,2917:1147978:22,12,23,13 +chrX 1147980 . C . . END=1148315 GT:DP:GQ:MIN_DP:PL 0/0:63:45:63:0,45,1508 +chrX 1148316 . A . . END=1148316 GT:DP:GQ:MIN_DP:PL 0/0:55:0:55:0,0,1324 +chrX 1148317 . T . . END=1148452 GT:DP:GQ:MIN_DP:PL 0/0:34:32:29:0,32,667 +chrX 1148453 . A . . END=1148453 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,677 +chrX 1148454 . T . . END=1148457 GT:DP:GQ:MIN_DP:PL 0/0:31:44:31:0,44,855 +chrX 1148458 . A . . END=1148458 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,455 +chrX 1148459 . T . . END=1148460 GT:DP:GQ:MIN_DP:PL 0/0:29:42:29:0,42,630 +chrX 1148461 . T . . END=1148461 GT:DP:GQ:MIN_DP:PL 0/0:28:15:28:0,15,834 +chrX 1148462 . T . . END=1148462 GT:DP:GQ:MIN_DP:PL 0/0:27:39:27:0,39,585 +chrX 1148463 . A . . END=1148463 GT:DP:GQ:MIN_DP:PL 0/0:26:0:26:0,0,524 +chrX 1148464 . T . . END=1148464 GT:DP:GQ:MIN_DP:PL 0/0:26:39:26:0,39,585 +chrX 1148465 . T . . END=1148465 GT:DP:GQ:MIN_DP:PL 0/0:26:9:26:0,9,745 +chrX 1148466 . T . . END=1148468 GT:DP:GQ:MIN_DP:PL 0/0:25:21:25:0,21,450 +chrX 1148469 . T . . END=1148469 GT:DP:GQ:MIN_DP:PL 0/0:24:0:24:0,0,585 +chrX 1148470 . T . . END=1148471 GT:DP:GQ:MIN_DP:PL 0/0:25:22:25:0,22,574 +chrX 1148472 . C . . END=1148473 GT:DP:GQ:MIN_DP:PL 0/0:25:0:25:0,0,441 +chrX 1148474 . T . . END=1148474 GT:DP:GQ:MIN_DP:PL 0/0:25:21:25:0,21,315 +chrX 1148475 . A . . END=1148478 GT:DP:GQ:MIN_DP:PL 0/0:27:0:27:0,0,313 +chrX 1148479 . T TATATATATATATATATATA, 384.02 . AS_QUALapprox=|398|0;AS_VarDP=0|10|0;DP=13;QUALapprox=398;RAW_GT_COUNT=0,0,1;RAW_MQandDP=41609,13;VarDP=10 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,10,0:10:30:0|1:1148479_T_TATATATATATATATATATA:398,30,0,398,30,398:1148479:0,0,4,6 +chrX 1148480 . T . . END=1148480 GT:DP:GQ:MIN_DP:PL 0/0:5:9:5:0,9,135 +chrX 1148481 . T A, 384.06 . AS_QUALapprox=|398|0;AS_VarDP=0|10|0;DP=13;QUALapprox=398;RAW_GT_COUNT=0,0,1;RAW_MQandDP=41609,13;VarDP=10 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,10,0:10:30:0|1:1148479_T_TATATATATATATATATATA:398,30,0,398,30,398:1148479:0,0,4,6 +chrX 1148482 . T . . END=1148494 GT:DP:GQ:MIN_DP:PL 0/0:3:0:3:0,0,25 +chrX 1148495 . A AATTTTT, 255.93 . AS_QUALapprox=|270|0;AS_VarDP=0|6|0;DP=8;QUALapprox=270;RAW_GT_COUNT=0,0,1;RAW_MQandDP=23609,8;VarDP=6 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,6,0:6:18:0|1:1148479_T_TATATATATATATATATATA:270,18,0,270,18,270:1148479:0,0,2,4 +chrX 1148496 . T . . END=1148496 GT:DP:GQ:MIN_DP:PL 0/0:6:15:6:0,15,225 +chrX 1148497 . A T, 255.97 . AS_QUALapprox=|270|0;AS_VarDP=0|6|0;DP=10;QUALapprox=270;RAW_GT_COUNT=0,0,1;RAW_MQandDP=30809,10;VarDP=6 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,6,0:6:18:0|1:1148479_T_TATATATATATATATATATA:270,18,0,270,18,270:1148479:0,0,2,4 +chrX 1148498 . T . . END=1148499 GT:DP:GQ:MIN_DP:PL 0/0:6:15:6:0,15,174 +chrX 1148500 . T . . END=1148535 GT:DP:GQ:MIN_DP:PL 0/0:12:24:9:0,24,348 +chrX 1148536 . C . . END=1148536 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,610 +chrX 1148537 . A . . END=1148634 GT:DP:GQ:MIN_DP:PL 0/0:52:83:52:0,83,981 +chrX 1148635 . G C, 694.64 . AS_QUALapprox=|702|0;AS_VarDP=26|26|0;BaseQRankSum=-0.033;DP=57;MQRankSum=0.000;QUALapprox=702;RAW_GT_COUNT=0,1,0;RAW_MQandDP=202148,57;ReadPosRankSum=-0.806;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,26,0:52:99:0|1:1148635_G_C:702,0,1004,781,1082,1862:1148635:18,8,17,9 +chrX 1148636 . A . . END=1148641 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 1148642 . A C, 714.64 . AS_QUALapprox=|722|0;AS_VarDP=25|27|0;BaseQRankSum=0.244;DP=56;MQRankSum=0.110;QUALapprox=722;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198548,56;ReadPosRankSum=0.076;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:25,27,0:52:99:1|0:1148635_G_C:722,0,948,797,1029,1826:1148635:17,8,19,8 +chrX 1148643 . C . . END=1148741 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,107,1448 +chrX 1148742 . G C, 2204.06 . AS_QUALapprox=|2218|0;AS_VarDP=0|50|0;DP=54;QUALapprox=2218;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183652,54;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,50,0:50:99:0|1:1148742_G_C:2218,150,0,2218,150,2218:1148742:0,0,29,21 +chrX 1148743 . C . . END=1148745 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 1148746 . C G, 2204.06 . AS_QUALapprox=|2218|0;AS_VarDP=0|50|0;DP=54;QUALapprox=2218;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183652,54;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,50,0:50:99:0|1:1148742_G_C:2218,150,0,2218,150,2218:1148742:0,0,29,21 +chrX 1148747 . G . . END=1148857 GT:DP:GQ:MIN_DP:PL 0/0:54:58:50:0,58,1336 +chrX 1148858 . G A, 592.64 . AS_QUALapprox=|600|0;AS_VarDP=25|23|0;BaseQRankSum=-0.556;DP=54;MQRankSum=0.000;QUALapprox=600;RAW_GT_COUNT=0,1,0;RAW_MQandDP=193716,54;ReadPosRankSum=-0.114;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:25,23,0:48:99:600,0,695,676,764,1439:8,17,10,13 +chrX 1148859 . C . . END=1149699 GT:DP:GQ:MIN_DP:PL 0/0:57:85:57:0,85,1241 +chrX 1149700 . A G, 519.64 . AS_QUALapprox=|527|0;AS_VarDP=26|20|0;BaseQRankSum=-1.225;DP=46;MQRankSum=0.000;QUALapprox=527;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=-0.444;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:26,20,0:46:99:527,0,741,604,801,1405:12,14,10,10 +chrX 1149701 . T . . END=1149722 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,103,1412 +chrX 1149723 . G A, 510.64 . AS_QUALapprox=|518|0;AS_VarDP=25|19|0;BaseQRankSum=1.946;DP=47;MQRankSum=0.000;QUALapprox=518;RAW_GT_COUNT=0,1,0;RAW_MQandDP=166329,47;ReadPosRankSum=-0.249;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:25,19,0:44:99:518,0,650,592,707,1300:14,11,12,7 +chrX 1149724 . G . . END=1149993 GT:DP:GQ:MIN_DP:PL 0/0:52:58:52:0,58,1229 +chrX 1149994 . T . . END=1150000 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,937 +chrX 1150001 . C CA, 197.60 . AS_QUALapprox=|205|0;AS_VarDP=14|12|0;BaseQRankSum=0.582;DP=41;MQRankSum=-1.502;QUALapprox=205;RAW_GT_COUNT=0,1,0;RAW_MQandDP=144090,41;ReadPosRankSum=-0.463;VarDP=26 GT:AD:DP:GQ:PL:SB 0/1:14,12,0:26:99:205,0,269,247,305,552:3,11,7,5 +chrX 1150002 . A . . END=1150017 GT:DP:GQ:MIN_DP:PL 0/0:36:90:36:0,90,1021 +chrX 1150018 . A AAAAAGAAAAG, 554.60 . AS_QUALapprox=|562|0;AS_VarDP=19|15|0;BaseQRankSum=-1.133;DP=39;MQRankSum=-1.973;QUALapprox=562;RAW_GT_COUNT=0,1,0;RAW_MQandDP=136771,39;ReadPosRankSum=-0.893;VarDP=34 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:19,15,0:34:99:0|1:1150018_A_AAAAAGAAAAG:562,0,753,619,798,1418:1150018:4,15,11,4 +chrX 1150019 . A . . END=1150033 GT:DP:GQ:MIN_DP:PL 0/0:40:96:40:0,96,1116 +chrX 1150034 . A G, 595.64 . AS_QUALapprox=|603|0;AS_VarDP=23|17|0;BaseQRankSum=-0.106;DP=41;MQRankSum=-2.037;QUALapprox=603;RAW_GT_COUNT=0,1,0;RAW_MQandDP=143971,41;ReadPosRankSum=0.326;VarDP=40 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,17,0:40:99:0|1:1150018_A_AAAAAGAAAAG:603,0,854,672,905,1577:1150018:6,17,11,6 +chrX 1150035 . A . . END=1150085 GT:DP:GQ:MIN_DP:PL 0/0:40:65:40:0,65,1076 +chrX 1150086 . ATAGC A, 670.60 . AS_QUALapprox=|678|0;AS_VarDP=26|18|0;BaseQRankSum=-0.038;DP=46;MQRankSum=-2.103;QUALapprox=678;RAW_GT_COUNT=0,1,0;RAW_MQandDP=160871,46;ReadPosRankSum=1.638;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:26,18,0:44:99:678,0,1006,756,1062,1821:11,15,10,8 +chrX 1150091 . T . . END=1150095 GT:DP:GQ:MIN_DP:PL 0/0:45:71:45:0,71,1255 +chrX 1150096 . AGATGATGGAGAT A, 725.60 . AS_QUALapprox=|733|0;AS_VarDP=22|19|0;BaseQRankSum=0.195;DP=52;MQRankSum=-1.934;QUALapprox=733;RAW_GT_COUNT=0,1,0;RAW_MQandDP=182471,52;ReadPosRankSum=0.600;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:22,19,0:41:99:733,0,855,800,933,1840:9,13,10,8 +chrX 1150108 . T *,TGATAGATAGATAGATAGATA, 657.01 . AS_QUALapprox=|0|854|0;AS_VarDP=0|18|16|0;DP=50;QUALapprox=1617;RAW_GT_COUNT=0,0,1;RAW_MQandDP=175271,50;VarDP=34 GT:AD:DP:GQ:PL:SB 1/2:0,18,16,0:34:99:1617,667,778,763,0,781,1543,771,820,1649:0,0,18,16 +chrX 1150109 . G . . END=1150130 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,110,1479 +chrX 1150131 . T C,TAGATAGATAGATAGAC, 917.64 . AS_QUALapprox=|925|168|0;AS_VarDP=27|18|0|0;BaseQRankSum=0.144;DP=62;MQRankSum=-2.143;QUALapprox=925;RAW_GT_COUNT=0,1,0;RAW_MQandDP=218007,62;ReadPosRankSum=2.179;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:27,18,0,0:45:99:925,0,1033,757,995,1785,901,1073,1801,1957:15,12,10,8 +chrX 1150132 . A . . END=1150173 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 1150174 . G A, 1186.64 . AS_QUALapprox=|1194|0;AS_VarDP=22|31|0;BaseQRankSum=1.003;DP=56;MQRankSum=-0.804;QUALapprox=1194;RAW_GT_COUNT=0,1,0;RAW_MQandDP=200036,56;ReadPosRankSum=-1.102;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,31,0:53:99:0|1:1150174_G_A:1194,0,804,1260,897,2157:1150174:15,7,15,16 +chrX 1150175 . G T, 1186.64 . AS_QUALapprox=|1194|0;AS_VarDP=22|31|0;BaseQRankSum=-1.180;DP=57;MQRankSum=-0.804;QUALapprox=1194;RAW_GT_COUNT=0,1,0;RAW_MQandDP=203636,57;ReadPosRankSum=-1.038;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,31,0:53:99:0|1:1150174_G_A:1194,0,804,1260,897,2157:1150174:15,7,15,16 +chrX 1150176 . A . . END=1150189 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 1150190 . G GATAGATAC, 1188.60 . AS_QUALapprox=|1196|0;AS_VarDP=21|30|0;BaseQRankSum=-0.355;DP=58;MQRankSum=-0.797;QUALapprox=1196;RAW_GT_COUNT=0,1,0;RAW_MQandDP=207236,58;ReadPosRankSum=-0.440;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:21,30,0:51:99:1196,0,771,1260,861,2121:15,6,13,17 +chrX 1150191 . A . . END=1150371 GT:DP:GQ:MIN_DP:PL 0/0:60:55:60:0,55,1593 +chrX 1150372 . A G, 2769.06 . AS_QUALapprox=|2783|0;AS_VarDP=0|63|0;DP=64;QUALapprox=2783;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219065,64;VarDP=63 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,63,0:63:99:0|1:1150372_A_G:2783,190,0,2783,190,2783:1150372:0,0,29,34 +chrX 1150373 . C . . END=1150376 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1150377 . C T, 2790.06 . AS_QUALapprox=|2804|0;AS_VarDP=0|63|0;DP=63;QUALapprox=2804;RAW_GT_COUNT=0,0,1;RAW_MQandDP=215465,63;VarDP=63 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,63,0:63:99:0|1:1150372_A_G:2804,190,0,2804,190,2804:1150372:0,0,29,34 +chrX 1150378 . A C, 857.64 . AS_QUALapprox=|865|0;AS_VarDP=28|31|0;BaseQRankSum=1.286;DP=63;MQRankSum=1.440;QUALapprox=865;RAW_GT_COUNT=0,1,0;RAW_MQandDP=215465,63;ReadPosRankSum=1.717;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:28,31,0:59:99:865,0,745,950,838,1788:14,14,14,17 +chrX 1150379 . A . . END=1150385 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 1150386 . A C, 2721.06 . AS_QUALapprox=|2735|0;AS_VarDP=0|61|0;DP=61;QUALapprox=2735;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208265,61;VarDP=61 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,61,0:61:99:0|1:1150372_A_G:2735,184,0,2735,184,2735:1150372:0,0,30,31 +chrX 1150387 . A . . END=1150405 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1150406 . G C, 741.64 . AS_QUALapprox=|749|0;AS_VarDP=29|29|0;BaseQRankSum=-1.029;DP=62;MQRankSum=-1.241;QUALapprox=749;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208365,62;ReadPosRankSum=-0.747;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:29,29,0:58:99:749,0,794,836,881,1717:14,15,15,14 +chrX 1150407 . G . . END=1150462 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 1150463 . A G, 1653.06 . AS_QUALapprox=|1667|0;AS_VarDP=1|52|0;BaseQRankSum=1.950;DP=58;MQRankSum=-0.520;QUALapprox=1667;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190975,58;ReadPosRankSum=0.164;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:1,52,0:53:99:1667,134,0,1670,156,1692:0,1,23,29 +chrX 1150464 . T . . END=1150493 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 1150494 . C T, 1000.64 . AS_QUALapprox=|1008|0;AS_VarDP=32|27|0;BaseQRankSum=-1.662;DP=61;MQRankSum=-2.803;QUALapprox=1008;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205447,61;ReadPosRankSum=-0.860;VarDP=59 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:32,27,0:59:99:0|1:1150494_C_T:1008,0,1251,1105,1333,2438:1150494:18,14,17,10 +chrX 1150495 . G . . END=1150501 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1150502 . T A, 975.64 . AS_QUALapprox=|983|0;AS_VarDP=33|26|0;BaseQRankSum=-0.361;DP=60;MQRankSum=-2.697;QUALapprox=983;RAW_GT_COUNT=0,1,0;RAW_MQandDP=202083,60;ReadPosRankSum=-1.110;VarDP=59 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:33,26,0:59:99:0|1:1150494_C_T:983,0,1297,1082,1375,2457:1150494:18,15,16,10 +chrX 1150503 . G . . END=1150513 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 1150514 . ATCCCAGCTACTCGGGCATGGTGGTGCACACCTACAG A, 918.60 . AS_QUALapprox=|926|0;AS_VarDP=35|25|0;BaseQRankSum=-1.798;DP=63;MQRankSum=-3.010;QUALapprox=926;RAW_GT_COUNT=0,1,0;RAW_MQandDP=218074,63;ReadPosRankSum=-1.321;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:35,25,0:60:99:0|1:1150494_C_T:926,0,1383,1031,1459,2490:1150494:17,18,14,11 +chrX 1150538 . T *,A, 1046.04 . AS_QUALapprox=|0|1068|0;AS_VarDP=0|23|31|0;DP=56;QUALapprox=1918;RAW_GT_COUNT=0,0,1;RAW_MQandDP=195110,56;VarDP=54 GT:AD:DP:GQ:PL:SB 1/2:0,23,31,0:54:99:1918,1056,1274,943,0,850,1979,1238,947,2127:0,0,29,25 +chrX 1150551 . T . . END=1150768 GT:DP:GQ:MIN_DP:PL 0/0:53:61:53:0,61,1121 +chrX 1150769 . T . . END=1150769 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,761 +chrX 1150770 . A . . END=1150845 GT:DP:GQ:MIN_DP:PL 0/0:35:74:35:0,74,870 +chrX 1150846 . AAAG A, 544.60 . AS_QUALapprox=|552|0;AS_VarDP=14|15|0;BaseQRankSum=0.050;DP=36;MQRankSum=0.000;QUALapprox=552;RAW_GT_COUNT=0,1,0;RAW_MQandDP=129600,36;ReadPosRankSum=-0.480;VarDP=29 GT:AD:DP:GQ:PL:SB 0/1:14,15,0:29:99:552,0,543,594,588,1182:11,3,8,7 +chrX 1150849 . G *,GA, 494.01 . AS_QUALapprox=|0|667|0;AS_VarDP=0|15|14|0;DP=35;QUALapprox=1219;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=29 GT:AD:DP:GQ:PL:SB 1/2:0,15,14,0:29:99:1219,504,543,611,0,552,1175,558,610,1200:0,0,19,10 +chrX 1150850 . A . . END=1150909 GT:DP:GQ:MIN_DP:PL 0/0:36:72:36:0,72,837 +chrX 1150910 . GAGAA G, 1585.03 . AS_QUALapprox=|1599|0;AS_VarDP=0|37|0;DP=43;QUALapprox=1599;RAW_GT_COUNT=0,0,1;RAW_MQandDP=153049,43;VarDP=37 GT:AD:DP:GQ:PL:SB 1/1:0,37,0:37:99:1599,111,0,1599,111,1599:0,0,21,16 +chrX 1150915 . A . . END=1150985 GT:DP:GQ:MIN_DP:PL 0/0:40:79:40:0,79,1073 +chrX 1150986 . GAGAAAGAA G, 590.60 . AS_QUALapprox=|598|0;AS_VarDP=21|16|0;BaseQRankSum=-0.390;DP=49;MQRankSum=0.000;QUALapprox=598;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=0.987;VarDP=37 GT:AD:DP:GQ:PL:SB 0/1:21,16,0:37:99:598,0,810,662,858,1520:14,7,10,6 +chrX 1150995 . A . . END=1151065 GT:DP:GQ:MIN_DP:PL 0/0:44:87:44:0,87,1128 +chrX 1151066 . T C, 1389.06 . AS_QUALapprox=|1403|0;AS_VarDP=0|44|0;DP=44;QUALapprox=1403;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158400,44;VarDP=44 GT:AD:DP:GQ:PL:SB 1/1:0,44,0:44:99:1403,131,0,1403,131,1403:0,0,23,21 +chrX 1151067 . G . . END=1151120 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,101,1465 +chrX 1151121 . G A, 797.64 . AS_QUALapprox=|805|0;AS_VarDP=21|30|0;BaseQRankSum=-0.707;DP=54;MQRankSum=0.000;QUALapprox=805;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=-1.618;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:21,30,0:51:99:805,0,532,867,622,1489:7,14,21,9 +chrX 1151122 . T . . END=1151185 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 1151186 . C G, 455.64 . AS_QUALapprox=|463|0;AS_VarDP=28|18|0;BaseQRankSum=1.781;DP=50;MQRankSum=0.000;QUALapprox=463;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=0.428;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:28,18,0:46:99:463,0,755,547,809,1356:17,11,6,12 +chrX 1151187 . C . . END=1151277 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1151278 . C T, 587.64 . AS_QUALapprox=|595|0;AS_VarDP=42|24|0;BaseQRankSum=-0.247;DP=68;MQRankSum=0.000;QUALapprox=595;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=0.100;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:42,24,0:66:99:595,0,1200,722,1272,1994:21,21,10,14 +chrX 1151279 . A . . END=1151402 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,115,1800 +chrX 1151403 . C CGAGAGA, 819.60 . AS_QUALapprox=|827|0;AS_VarDP=26|22|0;BaseQRankSum=-0.460;DP=63;MQRankSum=0.000;QUALapprox=827;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=-0.166;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:26,22,0:48:99:827,0,985,906,1051,1957:11,15,10,12 +chrX 1151404 . G . . END=1151460 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,106,1402 +chrX 1151461 . G A, 621.64 . AS_QUALapprox=|629|0;AS_VarDP=25|23|0;BaseQRankSum=2.567;DP=52;MQRankSum=0.000;QUALapprox=629;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=-0.083;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:25,23,0:48:99:629,0,602,704,671,1375:13,12,11,12 +chrX 1151462 . G . . END=1151520 GT:DP:GQ:MIN_DP:PL 0/0:45:64:45:0,64,872 +chrX 1151521 . A AAGAGAGAGGAGAGAGAAAAAGAGAGGACAC, 1063.60 . AS_QUALapprox=|1071|0;AS_VarDP=14|28|0;BaseQRankSum=-0.476;DP=59;MQRankSum=0.000;QUALapprox=1071;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-0.779;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:14,28,0:42:99:1071,0,506,1116,590,1707:10,4,13,15 +chrX 1151522 . A . . END=1151551 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,108,1245 +chrX 1151552 . A C, 263.64 . AS_QUALapprox=|271|0;AS_VarDP=30|15|0;BaseQRankSum=-2.222;DP=47;MQRankSum=0.000;QUALapprox=271;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=-0.361;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:30,15,0:45:99:271,0,1120,361,1163,1524:14,16,11,4 +chrX 1151553 . G . . END=1151554 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 1151555 . A . . END=1151555 GT:DP:GQ:MIN_DP:PL 0/0:55:0:55:0,0,729 +chrX 1151556 . A . . END=1151569 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1151570 . G . . END=1151570 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1156 +chrX 1151571 . A . . END=1151578 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,112,1721 +chrX 1151579 . G . . END=1151579 GT:DP:GQ:MIN_DP:PL 0/0:53:0:53:0,0,1255 +chrX 1151580 . A . . END=1151580 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 1151581 . G . . END=1151581 GT:DP:GQ:MIN_DP:PL 0/0:55:0:55:0,0,1345 +chrX 1151582 . A . . END=1151584 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 1151585 . G . . END=1151585 GT:DP:GQ:MIN_DP:PL 0/0:55:0:55:0,0,1365 +chrX 1151586 . A . . END=1151586 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 1151587 . A . . END=1151587 GT:DP:GQ:MIN_DP:PL 0/0:53:0:53:0,0,1255 +chrX 1151588 . A . . END=1151588 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 1151589 . A . . END=1151589 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1196 +chrX 1151590 . G . . END=1151592 GT:DP:GQ:MIN_DP:PL 0/0:53:86:53:0,86,1456 +chrX 1151593 . G . . END=1151593 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,1171 +chrX 1151594 . G . . END=1151713 GT:DP:GQ:MIN_DP:PL 0/0:50:31:49:0,31,1339 +chrX 1151714 . G T, 386.64 . AS_QUALapprox=|394|0;AS_VarDP=23|18|0;BaseQRankSum=-2.034;DP=42;MQRankSum=0.934;QUALapprox=394;RAW_GT_COUNT=0,1,0;RAW_MQandDP=150100,42;ReadPosRankSum=0.434;VarDP=41 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,18,0:41:99:0|1:1151714_G_T:394,0,653,462,706,1168:1151714:12,11,13,5 +chrX 1151715 . A . . END=1151736 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,114,1416 +chrX 1151737 . GAC G, 2374.03 . AS_QUALapprox=|2388|0;AS_VarDP=0|56|0;DP=60;QUALapprox=2388;RAW_GT_COUNT=0,0,1;RAW_MQandDP=214900,60;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,56,0:56:99:0|1:1151714_G_T:2388,168,0,2388,168,2388:1151714:0,0,31,25 +chrX 1151740 . C . . END=1151758 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 1151759 . C T, 890.64 . AS_QUALapprox=|898|0;AS_VarDP=35|26|0;BaseQRankSum=1.039;DP=61;MQRankSum=0.895;QUALapprox=898;RAW_GT_COUNT=0,1,0;RAW_MQandDP=218500,61;ReadPosRankSum=0.293;VarDP=61 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:35,26,0:61:99:0|1:1151714_G_T:898,0,1339,1003,1417,2420:1151714:18,17,13,13 +chrX 1151760 . G . . END=1151768 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1151769 . G A, 927.64 . AS_QUALapprox=|935|0;AS_VarDP=34|28|0;BaseQRankSum=-1.077;DP=62;MQRankSum=0.940;QUALapprox=935;RAW_GT_COUNT=0,1,0;RAW_MQandDP=222100,62;ReadPosRankSum=-0.625;VarDP=62 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:34,28,0:62:99:0|1:1151714_G_T:935,0,1291,1038,1375,2413:1151714:19,15,14,14 +chrX 1151770 . T . . END=1151988 GT:DP:GQ:MIN_DP:PL 0/0:51:41:51:0,41,1116 +chrX 1151989 . T TAA, 1144.03 . AS_QUALapprox=|1158|0;AS_VarDP=0|39|0;DP=46;QUALapprox=1158;RAW_GT_COUNT=0,0,1;RAW_MQandDP=163296,46;VarDP=39 GT:AD:DP:GQ:PL:SB 1/1:0,39,0:39:99:1158,117,0,1159,117,1159:0,0,14,25 +chrX 1151990 . A . . END=1152399 GT:DP:GQ:MIN_DP:PL 0/0:58:26:56:0,26,1528 +chrX 1152400 . C T, 736.64 . AS_QUALapprox=|744|0;AS_VarDP=28|28|0;BaseQRankSum=-0.529;DP=57;MQRankSum=0.000;QUALapprox=744;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-1.705;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:28,28,0:56:99:744,0,735,827,820,1647:12,16,16,12 +chrX 1152401 . G . . END=1152486 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1152487 . C G, 1057.64 . AS_QUALapprox=|1065|0;AS_VarDP=27|38|0;BaseQRankSum=-2.137;DP=65;MQRankSum=0.000;QUALapprox=1065;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=0.593;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:27,38,0:65:99:1065,0,743,1147,857,2004:10,17,21,17 +chrX 1152488 . T . . END=1152606 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1152607 . G GCTCT, 1377.60 . AS_QUALapprox=|1385|0;AS_VarDP=24|35|0;BaseQRankSum=0.542;DP=66;MQRankSum=-0.794;QUALapprox=1385;RAW_GT_COUNT=0,1,0;RAW_MQandDP=235681,66;ReadPosRankSum=0.093;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:24,35,0:59:99:1385,0,903,1458,1008,2466:13,11,19,16 +chrX 1152608 . C . . END=1152631 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1152632 . G C, 922.64 . AS_QUALapprox=|930|0;AS_VarDP=27|36|0;BaseQRankSum=-0.692;DP=70;MQRankSum=0.000;QUALapprox=930;RAW_GT_COUNT=0,1,0;RAW_MQandDP=252000,70;ReadPosRankSum=-0.549;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:27,36,0:63:99:930,0,700,1011,807,1819:14,13,19,17 +chrX 1152633 . A . . END=1152756 GT:DP:GQ:MIN_DP:PL 0/0:81:99:81:0,120,1800 +chrX 1152757 . G A, 588.64 . AS_QUALapprox=|596|0;AS_VarDP=28|22|0;BaseQRankSum=-0.863;DP=51;MQRankSum=-0.364;QUALapprox=596;RAW_GT_COUNT=0,1,0;RAW_MQandDP=168541,51;ReadPosRankSum=0.244;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,22,0:50:99:0|1:1152757_G_A:596,0,973,680,1038,1718:1152757:16,12,10,12 +chrX 1152758 . A . . END=1152777 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,107,1349 +chrX 1152778 . A G, 1020.64 . AS_QUALapprox=|1028|0;AS_VarDP=18|30|0;BaseQRankSum=0.239;DP=48;MQRankSum=-0.219;QUALapprox=1028;RAW_GT_COUNT=0,1,0;RAW_MQandDP=160252,48;ReadPosRankSum=0.075;VarDP=48 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:18,30,0:48:99:0|1:1152757_G_A:1028,0,413,1082,502,1584:1152757:8,10,17,13 +chrX 1152779 . A . . END=1152785 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,103,1309 +chrX 1152786 . G . . END=1152786 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,1057 +chrX 1152787 . T . . END=1152851 GT:DP:GQ:MIN_DP:PL 0/0:40:34:36:0,34,962 +chrX 1152852 . G A, 533.64 . AS_QUALapprox=|541|0;AS_VarDP=26|15|0;BaseQRankSum=0.716;DP=41;MQRankSum=-3.410;QUALapprox=541;RAW_GT_COUNT=0,1,0;RAW_MQandDP=125543,41;ReadPosRankSum=1.050;VarDP=41 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,15,0:41:99:0|1:1152757_G_A:541,0,1047,620,1092,1711:1152757:12,14,6,9 +chrX 1152853 . G . . END=1152856 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,105,1575 +chrX 1152857 . G A, 460.64 . AS_QUALapprox=|468|0;AS_VarDP=26|13|0;BaseQRankSum=-1.820;DP=39;MQRankSum=-3.445;QUALapprox=468;RAW_GT_COUNT=0,1,0;RAW_MQandDP=119918,39;ReadPosRankSum=1.756;VarDP=39 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,13,0:39:99:0|1:1152757_G_A:468,0,1053,546,1092,1638:1152757:12,14,5,8 +chrX 1152858 . A . . END=1152860 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,105,1575 +chrX 1152861 . A C, 466.64 . AS_QUALapprox=|474|0;AS_VarDP=24|13|0;BaseQRankSum=-0.365;DP=37;MQRankSum=-3.800;QUALapprox=474;RAW_GT_COUNT=0,1,0;RAW_MQandDP=115877,37;ReadPosRankSum=1.910;VarDP=37 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,13,0:37:99:0|1:1152757_G_A:474,0,969,546,1008,1554:1152757:11,13,5,8 +chrX 1152862 . G A, 466.64 . AS_QUALapprox=|474|0;AS_VarDP=24|13|0;BaseQRankSum=0.070;DP=37;MQRankSum=-3.800;QUALapprox=474;RAW_GT_COUNT=0,1,0;RAW_MQandDP=115877,37;ReadPosRankSum=2.521;VarDP=37 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,13,0:37:99:0|1:1152757_G_A:474,0,969,546,1008,1554:1152757:11,13,5,8 +chrX 1152863 . G . . END=1152869 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1187 +chrX 1152870 . C T, 789.64 . AS_QUALapprox=|797|0;AS_VarDP=24|31|0;BaseQRankSum=-2.084;DP=55;MQRankSum=-3.038;QUALapprox=797;RAW_GT_COUNT=0,1,0;RAW_MQandDP=168599,55;ReadPosRankSum=2.600;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,31,0:55:99:0|1:1152757_G_A:797,0,929,869,1008,1877:1152757:11,13,11,20 +chrX 1152871 . A G, 747.64 . AS_QUALapprox=|755|0;AS_VarDP=24|30|0;BaseQRankSum=-0.089;DP=54;MQRankSum=-2.945;QUALapprox=755;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165118,54;ReadPosRankSum=-1.123;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,30,0:54:99:0|1:1152757_G_A:755,0,932,827,1008,1835:1152757:11,13,10,20 +chrX 1152872 . C . . END=1152872 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 1152873 . T C, 745.64 . AS_QUALapprox=|753|0;AS_VarDP=25|30|0;BaseQRankSum=-0.586;DP=55;MQRankSum=-3.018;QUALapprox=753;RAW_GT_COUNT=0,1,0;RAW_MQandDP=168718,55;ReadPosRankSum=-1.350;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,30,0:55:99:0|1:1152757_G_A:753,0,939,827,1015,1842:1152757:11,14,10,20 +chrX 1152874 . T . . END=1152890 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 1152891 . G A, 818.64 . AS_QUALapprox=|826|0;AS_VarDP=27|27|0;BaseQRankSum=-0.057;DP=55;MQRankSum=-3.420;QUALapprox=826;RAW_GT_COUNT=0,1,0;RAW_MQandDP=167791,55;ReadPosRankSum=-2.892;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,27,0:54:99:0|1:1152757_G_A:826,0,978,907,1057,1964:1152757:13,14,10,17 +chrX 1152892 . A . . END=1153052 GT:DP:GQ:MIN_DP:PL 0/0:52:68:52:0,68,1300 +chrX 1153053 . C T, 508.64 . AS_QUALapprox=|516|0;AS_VarDP=36|20|0;BaseQRankSum=2.050;DP=57;MQRankSum=-0.138;QUALapprox=516;RAW_GT_COUNT=0,1,0;RAW_MQandDP=197083,57;ReadPosRankSum=-0.137;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:36,20,0:56:99:516,0,983,624,1043,1667:15,21,10,10 +chrX 1153054 . G . . END=1153216 GT:DP:GQ:MIN_DP:PL 0/0:62:84:62:0,84,1781 +chrX 1153217 . C A, 771.64 . AS_QUALapprox=|779|0;AS_VarDP=30|22|0;BaseQRankSum=0.551;DP=52;MQRankSum=0.000;QUALapprox=779;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=-0.491;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:30,22,0:52:99:0|1:1153217_C_A:779,0,1140,870,1206,2076:1153217:17,13,8,14 +chrX 1153218 . A . . END=1153226 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 1153227 . C T, 770.64 . AS_QUALapprox=|778|0;AS_VarDP=31|22|0;BaseQRankSum=0.240;DP=55;MQRankSum=0.000;QUALapprox=778;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=0.880;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:31,22,0:53:99:0|1:1153217_C_A:778,0,1184,871,1250,2121:1153217:18,13,9,13 +chrX 1153228 . T . . END=1153477 GT:DP:GQ:MIN_DP:PL 0/0:54:70:54:0,70,1398 +chrX 1153478 . A AAAT,AAATAATAATAATAAT, 1961.02 . AS_QUALapprox=|1125|1077|0;AS_VarDP=0|23|22|0;DP=59;QUALapprox=1978;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=45 GT:AD:DP:GQ:PL:SB 1/2:0,23,22,0:45:99:1978,931,853,971,0,901,1941,932,974,1935:0,0,17,28 +chrX 1153479 . A . . END=1153504 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1153505 . A . . END=1153505 GT:DP:GQ:MIN_DP:PL 0/0:65:0:65:0,0,1624 +chrX 1153506 . T . . END=1154024 GT:DP:GQ:MIN_DP:PL 0/0:60:34:54:0,34,1234 +chrX 1154025 . C T, 638.64 . AS_QUALapprox=|646|0;AS_VarDP=28|23|0;BaseQRankSum=1.323;DP=53;MQRankSum=0.000;QUALapprox=646;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=-2.169;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:28,23,0:51:99:646,0,800,730,869,1600:17,11,12,11 +chrX 1154026 . A . . END=1154036 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 1154037 . G A, 627.64 . AS_QUALapprox=|635|0;AS_VarDP=29|24|0;BaseQRankSum=0.723;DP=55;MQRankSum=0.000;QUALapprox=635;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-2.977;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:29,24,0:53:99:635,0,764,722,836,1558:16,13,14,10 +chrX 1154038 . C . . END=1154195 GT:DP:GQ:MIN_DP:PL 0/0:53:90:53:0,90,1400 +chrX 1154196 . T C, 482.64 . AS_QUALapprox=|490|0;AS_VarDP=20|20|0;BaseQRankSum=-1.882;DP=43;MQRankSum=0.000;QUALapprox=490;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154800,43;ReadPosRankSum=0.514;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:20,20,0:40:99:490,0,555,550,615,1165:6,14,6,14 +chrX 1154197 . G . . END=1154356 GT:DP:GQ:MIN_DP:PL 0/0:32:46:32:0,46,690 +chrX 1154357 . C T, 157.64 . AS_QUALapprox=|165|0;AS_VarDP=14|6|0;BaseQRankSum=-0.937;DP=25;MQRankSum=0.000;QUALapprox=165;RAW_GT_COUNT=0,1,0;RAW_MQandDP=90000,25;ReadPosRankSum=-0.785;VarDP=20 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:14,6,0:20:99:0|1:1154357_C_T:165,0,538,207,556,763:1154357:0,14,0,6 +chrX 1154358 . C . . END=1154367 GT:DP:GQ:MIN_DP:PL 0/0:18:45:18:0,45,491 +chrX 1154368 . A C, 632.06 . AS_QUALapprox=|646|0;AS_VarDP=0|19|0;DP=22;QUALapprox=646;RAW_GT_COUNT=0,0,1;RAW_MQandDP=76756,22;VarDP=19 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,19,0:19:57:0|1:1154357_C_T:646,57,0,646,57,646:1154357:0,0,0,19 +chrX 1154369 . C . . END=1154389 GT:DP:GQ:MIN_DP:PL 0/0:18:43:18:0,43,461 +chrX 1154390 . T C, 129.64 . AS_QUALapprox=|137|0;AS_VarDP=14|5|0;BaseQRankSum=0.195;DP=22;MQRankSum=0.955;QUALapprox=137;RAW_GT_COUNT=0,1,0;RAW_MQandDP=68870,22;ReadPosRankSum=0.835;VarDP=19 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:14,5,0:19:99:0|1:1154357_C_T:137,0,521,179,536,715:1154357:1,13,0,5 +chrX 1154391 . T . . END=1154406 GT:DP:GQ:MIN_DP:PL 0/0:22:24:21:0,24,561 +chrX 1154407 . T . . END=1154407 GT:DP:GQ:MIN_DP:PL 0/0:25:0:25:0,0,571 +chrX 1154408 . T . . END=1154408 GT:DP:GQ:MIN_DP:PL 0/0:25:40:25:0,40,759 +chrX 1154409 . C . . END=1154409 GT:DP:GQ:MIN_DP:PL 0/0:24:0:24:0,0,536 +chrX 1154410 . A . . END=1154412 GT:DP:GQ:MIN_DP:PL 0/0:23:37:22:0,37,696 +chrX 1154413 . T . . END=1154414 GT:DP:GQ:MIN_DP:PL 0/0:24:3:24:0,3,645 +chrX 1154415 . C . . END=1154416 GT:DP:GQ:MIN_DP:PL 0/0:24:37:24:0,37,715 +chrX 1154417 . T . . END=1154417 GT:DP:GQ:MIN_DP:PL 0/0:22:17:22:0,17,616 +chrX 1154418 . A . . END=1154418 GT:DP:GQ:MIN_DP:PL 0/0:23:20:23:0,20,620 +chrX 1154419 . G . . END=1154420 GT:DP:GQ:MIN_DP:PL 0/0:22:0:22:0,0,471 +chrX 1154421 . T . . END=1154433 GT:DP:GQ:MIN_DP:PL 0/0:22:20:21:0,20,405 +chrX 1154434 . C . . END=1154434 GT:DP:GQ:MIN_DP:PL 0/0:23:0:23:0,0,491 +chrX 1154435 . C . . END=1154435 GT:DP:GQ:MIN_DP:PL 0/0:23:24:23:0,24,360 +chrX 1154436 . T TCCTCTCCTCTCCTCC, 138.09 . AS_QUALapprox=|152|0;AS_VarDP=0|4|0;DP=15;QUALapprox=152;RAW_GT_COUNT=0,0,1;RAW_MQandDP=40822,15;VarDP=4 GT:AD:DP:GQ:PL:SB 1/1:0,4,0:4:12:152,12,0,152,12,153:0,0,4,0 +chrX 1154437 . C . . END=1154464 GT:DP:GQ:MIN_DP:PL 0/0:6:0:6:0,0,104 +chrX 1154465 . C . . END=1154465 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,223 +chrX 1154466 . C . . END=1154466 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,199 +chrX 1154467 . C . . END=1154471 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,213 +chrX 1154472 . T . . END=1154472 GT:DP:GQ:MIN_DP:PL 0/0:19:11:19:0,11,215 +chrX 1154473 . C . . END=1154485 GT:DP:GQ:MIN_DP:PL 0/0:12:21:8:0,21,223 +chrX 1154486 . T TCCTCC, 87.60 . AS_QUALapprox=|95|0;AS_VarDP=5|5|0;BaseQRankSum=0.833;DP=28;MQRankSum=0.000;QUALapprox=95;RAW_GT_COUNT=0,1,0;RAW_MQandDP=77333,28;ReadPosRankSum=0.700;VarDP=10 GT:AD:DP:GQ:PL:SB 0/1:5,5,0:10:95:95,0,144,110,159,269:3,2,1,4 +chrX 1154487 . C . . END=1154514 GT:DP:GQ:MIN_DP:PL 0/0:14:27:13:0,27,296 +chrX 1154515 . C . . END=1154515 GT:DP:GQ:MIN_DP:PL 0/0:15:0:15:0,0,312 +chrX 1154516 . C . . END=1154525 GT:DP:GQ:MIN_DP:PL 0/0:14:33:11:0,33,312 +chrX 1154526 . G . . END=1154526 GT:DP:GQ:MIN_DP:PL 0/0:12:0:12:0,0,199 +chrX 1154527 . T . . END=1154589 GT:DP:GQ:MIN_DP:PL 0/0:18:28:13:0,28,382 +chrX 1154590 . T TTTTTCTTTTC, 707.60 . AS_QUALapprox=|715|0;AS_VarDP=10|18|0;BaseQRankSum=-1.084;DP=38;MQRankSum=0.000;QUALapprox=715;RAW_GT_COUNT=0,1,0;RAW_MQandDP=136800,38;ReadPosRankSum=-0.624;VarDP=28 GT:AD:DP:GQ:PL:SB 0/1:10,18,0:28:99:715,0,366,745,420,1165:6,4,10,8 +chrX 1154591 . T . . END=1154682 GT:DP:GQ:MIN_DP:PL 0/0:36:75:36:0,75,1082 +chrX 1154683 . G T, 605.64 . AS_QUALapprox=|613|0;AS_VarDP=20|22|0;BaseQRankSum=1.457;DP=53;MQRankSum=0.000;QUALapprox=613;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=-0.176;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:20,22,0:42:99:613,0,529,673,595,1268:17,3,16,6 +chrX 1154684 . G . . END=1155255 GT:DP:GQ:MIN_DP:PL 0/0:53:57:53:0,57,1082 +chrX 1155256 . A C, 745.64 . AS_QUALapprox=|753|0;AS_VarDP=35|30|0;BaseQRankSum=0.093;DP=68;MQRankSum=0.000;QUALapprox=753;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=0.072;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:35,30,0:65:99:753,0,920,858,1009,1867:20,15,17,13 +chrX 1155257 . A . . END=1155876 GT:DP:GQ:MIN_DP:PL 0/0:76:87:76:0,87,1386 +chrX 1155877 . A . . END=1155955 GT:DP:GQ:MIN_DP:PL 0/0:78:0:78:0,0,947 +chrX 1155956 . G . . END=1155956 GT:DP:GQ:MIN_DP:PL 0/0:70:60:70:0,60,1305 +chrX 1155957 . T . . END=1155971 GT:DP:GQ:MIN_DP:PL 0/0:62:0:62:0,0,618 +chrX 1155972 . C . . END=1155993 GT:DP:GQ:MIN_DP:PL 0/0:44:58:44:0,58,1156 +chrX 1155994 . T . . END=1155994 GT:DP:GQ:MIN_DP:PL 0/0:45:16:45:0,16,1246 +chrX 1155995 . T . . END=1156231 GT:DP:GQ:MIN_DP:PL 0/0:33:39:29:0,39,794 +chrX 1156232 . A G, 302.64 . AS_QUALapprox=|310|0;AS_VarDP=6|10|0;BaseQRankSum=1.420;DP=18;MQRankSum=0.179;QUALapprox=310;RAW_GT_COUNT=0,1,0;RAW_MQandDP=53174,18;ReadPosRankSum=0.542;VarDP=16 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:6,10,0:16:99:0|1:1156232_A_G:310,0,150,328,180,508:1156232:3,3,7,3 +chrX 1156233 . T . . END=1156246 GT:DP:GQ:MIN_DP:PL 0/0:25:38:18:0,38,486 +chrX 1156247 . T . . END=1156247 GT:DP:GQ:MIN_DP:PL 0/0:31:19:31:0,19,829 +chrX 1156248 . C . . END=1157024 GT:DP:GQ:MIN_DP:PL 0/0:32:37:32:0,37,923 +chrX 1157025 . T . . END=1157025 GT:DP:GQ:MIN_DP:PL 0/0:38:5:38:0,5,993 +chrX 1157026 . C . . END=1157026 GT:DP:GQ:MIN_DP:PL 0/0:39:96:39:0,96,1440 +chrX 1157027 . C . . END=1157028 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,915 +chrX 1157029 . T . . END=1157029 GT:DP:GQ:MIN_DP:PL 0/0:36:79:36:0,79,1052 +chrX 1157030 . C . . END=1157031 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,858 +chrX 1157032 . C CA, 558.03 . AS_QUALapprox=|572|0;AS_VarDP=0|29|0;DP=46;QUALapprox=572;RAW_GT_COUNT=0,0,1;RAW_MQandDP=161600,46;VarDP=29 GT:AD:DP:GQ:PL:SB 1/1:0,29,0:29:85:572,85,0,572,85,572:0,0,10,19 +chrX 1157033 . A . . END=1159638 GT:DP:GQ:MIN_DP:PL 0/0:61:25:56:0,25,1305 +chrX 1159639 . C . . END=1159639 GT:DP:GQ:MIN_DP:PL 0/0:60:7:60:0,7,1468 +chrX 1159640 . A . . END=1159734 GT:DP:GQ:MIN_DP:PL 0/0:59:50:59:0,50,1447 +chrX 1159735 . AAGAG A, 712.60 . AS_QUALapprox=|720|0;AS_VarDP=26|19|0;BaseQRankSum=-1.749;DP=49;MQRankSum=0.000;QUALapprox=720;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=-1.328;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:26,19,0:45:99:720,0,1024,798,1081,1879:10,16,9,10 +chrX 1159740 . A . . END=1159815 GT:DP:GQ:MIN_DP:PL 0/0:45:27:24:0,27,725 +chrX 1159816 . G . . END=1159816 GT:DP:GQ:MIN_DP:PL 0/0:21:0:21:0,0,511 +chrX 1159817 . C . . END=1159849 GT:DP:GQ:MIN_DP:PL 0/0:23:40:23:0,40,509 +chrX 1159850 . G A, 5.62 . AS_QUALapprox=|13|0;AS_VarDP=22|4|0;BaseQRankSum=-1.542;DP=29;MQRankSum=0.000;QUALapprox=13;RAW_GT_COUNT=0,1,0;RAW_MQandDP=102025,29;ReadPosRankSum=2.526;VarDP=26 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,4,0:26:13:0|1:1159850_G_A:13,0,660,80,672,752:1159850:14,8,1,3 +chrX 1159851 . G . . END=1159900 GT:DP:GQ:MIN_DP:PL 0/0:34:27:27:0,27,709 +chrX 1159901 . C . . END=1159901 GT:DP:GQ:MIN_DP:PL 0/0:29:3:29:0,3,739 +chrX 1159902 . A . . END=1159914 GT:DP:GQ:MIN_DP:PL 0/0:38:27:34:0,27,942 +chrX 1159915 . C . . END=1159915 GT:DP:GQ:MIN_DP:PL 0/0:37:12:37:0,12,938 +chrX 1159916 . A . . END=1160044 GT:DP:GQ:MIN_DP:PL 0/0:41:28:35:0,28,865 +chrX 1160045 . C . . END=1160045 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,1029 +chrX 1160046 . A . . END=1160056 GT:DP:GQ:MIN_DP:PL 0/0:54:77:54:0,77,1264 +chrX 1160057 . C . . END=1160057 GT:DP:GQ:MIN_DP:PL 0/0:50:0:50:0,0,1138 +chrX 1160058 . A . . END=1160064 GT:DP:GQ:MIN_DP:PL 0/0:51:46:51:0,46,1393 +chrX 1160065 . C . . END=1160065 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,928 +chrX 1160066 . A . . END=1160076 GT:DP:GQ:MIN_DP:PL 0/0:48:60:48:0,60,1350 +chrX 1160077 . C . . END=1160077 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,924 +chrX 1160078 . A . . END=1160294 GT:DP:GQ:MIN_DP:PL 0/0:52:21:47:0,21,1066 +chrX 1160295 . C . . END=1160297 GT:DP:GQ:MIN_DP:PL 0/0:45:4:45:0,4,1287 +chrX 1160298 . A . . END=1160319 GT:DP:GQ:MIN_DP:PL 0/0:40:87:40:0,87,1012 +chrX 1160320 . G GGAGA, 624.60 . AS_QUALapprox=|632|0;AS_VarDP=13|16|0;BaseQRankSum=0.689;DP=39;MQRankSum=-0.832;QUALapprox=632;RAW_GT_COUNT=0,1,0;RAW_MQandDP=135256,39;ReadPosRankSum=1.627;VarDP=29 GT:AD:DP:GQ:PL:SB 0/1:13,16,0:29:99:632,0,498,672,547,1218:5,8,5,11 +chrX 1160321 . G . . END=1160324 GT:DP:GQ:MIN_DP:PL 0/0:36:90:36:0,90,1350 +chrX 1160325 . GAC G, 652.60 . AS_QUALapprox=|660|0;AS_VarDP=18|17|0;BaseQRankSum=-0.393;DP=42;MQRankSum=1.029;QUALapprox=660;RAW_GT_COUNT=0,1,0;RAW_MQandDP=146056,42;ReadPosRankSum=-2.088;VarDP=35 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:18,17,0:35:99:0|1:1160325_GAC_G:660,0,702,714,753,1468:1160325:6,12,8,9 +chrX 1160328 . A . . END=1160332 GT:DP:GQ:MIN_DP:PL 0/0:37:87:37:0,87,1177 +chrX 1160333 . CAG C, 684.60 . AS_QUALapprox=|692|0;AS_VarDP=18|18|0;BaseQRankSum=-0.153;DP=39;MQRankSum=1.056;QUALapprox=692;RAW_GT_COUNT=0,1,0;RAW_MQandDP=135256,39;ReadPosRankSum=-0.760;VarDP=36 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:18,18,0:36:99:0|1:1160325_GAC_G:692,0,699,746,753,1499:1160325:6,12,8,10 +chrX 1160336 . A . . END=1160362 GT:DP:GQ:MIN_DP:PL 0/0:61:22:52:0,22,1232 +chrX 1160363 . C . . END=1160363 GT:DP:GQ:MIN_DP:PL 0/0:56:0:56:0,0,1245 +chrX 1160364 . A . . END=1160384 GT:DP:GQ:MIN_DP:PL 0/0:57:89:57:0,89,1303 +chrX 1160385 . C . . END=1160385 GT:DP:GQ:MIN_DP:PL 0/0:49:9:49:0,9,1237 +chrX 1160386 . A . . END=1160394 GT:DP:GQ:MIN_DP:PL 0/0:52:35:46:0,35,1120 +chrX 1160395 . A . . END=1160395 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,1125 +chrX 1160396 . A . . END=1160520 GT:DP:GQ:MIN_DP:PL 0/0:47:23:42:0,23,1048 +chrX 1160521 . A . . END=1160521 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,1147 +chrX 1160522 . A . . END=1160550 GT:DP:GQ:MIN_DP:PL 0/0:50:42:50:0,42,1141 +chrX 1160551 . A . . END=1160551 GT:DP:GQ:MIN_DP:PL 0/0:45:7:45:0,7,1087 +chrX 1160552 . A . . END=1160597 GT:DP:GQ:MIN_DP:PL 0/0:46:22:42:0,22,899 +chrX 1160598 . T . . END=1160598 GT:DP:GQ:MIN_DP:PL 0/0:39:12:39:0,12,765 +chrX 1160599 . G . . END=1160664 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,102,1335 +chrX 1160665 . C . . END=1160665 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,1112 +chrX 1160666 . A . . END=1160692 GT:DP:GQ:MIN_DP:PL 0/0:45:46:45:0,46,1064 +chrX 1160693 . C . . END=1160693 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,925 +chrX 1160694 . A . . END=1160720 GT:DP:GQ:MIN_DP:PL 0/0:43:34:36:0,34,972 +chrX 1160721 . C . . END=1160721 GT:DP:GQ:MIN_DP:PL 0/0:41:5:41:0,5,958 +chrX 1160722 . A . . END=1160728 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,99,1485 +chrX 1160729 . C . . END=1160729 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,790 +chrX 1160730 . A . . END=1160730 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,105,1575 +chrX 1160731 . C . . END=1160731 GT:DP:GQ:MIN_DP:PL 0/0:35:12:35:0,12,850 +chrX 1160732 . A . . END=1160733 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,111,1340 +chrX 1160734 . G . . END=1160734 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,744 +chrX 1160735 . G . . END=1160772 GT:DP:GQ:MIN_DP:PL 0/0:41:53:41:0,53,960 +chrX 1160773 . C . . END=1160773 GT:DP:GQ:MIN_DP:PL 0/0:38:15:38:0,15,1003 +chrX 1160774 . A . . END=1160775 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,106,1261 +chrX 1160776 . G . . END=1160776 GT:DP:GQ:MIN_DP:PL 0/0:37:2:37:0,2,916 +chrX 1160777 . G . . END=1160795 GT:DP:GQ:MIN_DP:PL 0/0:39:44:39:0,44,1111 +chrX 1160796 . G . . END=1160796 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,986 +chrX 1160797 . G . . END=1162359 GT:DP:GQ:MIN_DP:PL 0/0:48:24:46:0,24,1090 +chrX 1162360 . T G, 715.64 . AS_QUALapprox=|723|0;AS_VarDP=27|28|0;BaseQRankSum=0.261;DP=59;MQRankSum=0.000;QUALapprox=723;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-0.581;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:27,28,0:55:99:723,0,695,804,778,1581:17,10,21,7 +chrX 1162361 . A . . END=1162639 GT:DP:GQ:MIN_DP:PL 0/0:53:58:53:0,58,1095 +chrX 1162640 . A G, 406.64 . AS_QUALapprox=|414|0;AS_VarDP=21|16|0;BaseQRankSum=-0.336;DP=38;MQRankSum=0.000;QUALapprox=414;RAW_GT_COUNT=0,1,0;RAW_MQandDP=136800,38;ReadPosRankSum=-0.307;VarDP=37 GT:AD:DP:GQ:PL:SB 0/1:21,16,0:37:99:414,0,586,478,634,1112:9,12,10,6 +chrX 1162641 . A . . END=1162709 GT:DP:GQ:MIN_DP:PL 0/0:48:71:48:0,71,1126 +chrX 1162710 . T . . END=1162710 GT:DP:GQ:MIN_DP:PL 0/0:50:12:50:0,12,1280 +chrX 1162711 . G . . END=1162819 GT:DP:GQ:MIN_DP:PL 0/0:62:66:62:0,66,1478 +chrX 1162820 . A . . END=1162822 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,869 +chrX 1162823 . G C, 683.04 . AS_QUALapprox=|878|0;AS_VarDP=22|25|0;BaseQRankSum=1.315;DP=48;MQRankSum=0.000;QUALapprox=878;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=1.473;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,25,0:47:99:0|1:1162823_G_C:878,0,829,815,897,1688:1162823:11,11,11,5 +chrX 1162824 . A . . END=1162826 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,117,1755 +chrX 1162827 . G . . END=1162827 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,1087 +chrX 1162828 . A . . END=1162833 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 1162834 . A G, 587.64 . AS_QUALapprox=|595|0;AS_VarDP=22|16|0;BaseQRankSum=1.403;DP=50;MQRankSum=0.000;QUALapprox=595;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=1.611;VarDP=38 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,16,0:38:99:0|1:1162823_G_C:595,0,876,662,924,1586:1162823:12,10,11,5 +chrX 1162835 . G . . END=1162838 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,117,1755 +chrX 1162839 . G GA, 587.60 . AS_QUALapprox=|595|0;AS_VarDP=22|16|0;BaseQRankSum=1.385;DP=52;MQRankSum=0.000;QUALapprox=595;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=1.568;VarDP=38 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,16,0:38:99:0|1:1162823_G_C:595,0,876,662,924,1586:1162823:12,10,11,5 +chrX 1162840 . A . . END=1162841 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,117,1755 +chrX 1162842 . G A,GGAAAA, 881.64 . AS_QUALapprox=|889|221|0;AS_VarDP=17|16|0|0;BaseQRankSum=1.672;DP=52;MQRankSum=0.000;QUALapprox=889;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=0.126;VarDP=33 GT:AD:DP:GQ:PL:SB 0/1:17,16,0,0:33:99:889,0,855,668,712,1620,838,845,1536,1750:11,6,11,5 +chrX 1162843 . G . . END=1162908 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,103,1383 +chrX 1162909 . C T, 815.64 . AS_QUALapprox=|823|0;AS_VarDP=24|31|0;BaseQRankSum=-0.219;DP=56;MQRankSum=0.000;QUALapprox=823;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=0.849;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:24,31,0:55:99:823,0,594,894,687,1582:14,10,18,13 +chrX 1162910 . G . . END=1163127 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,112,1513 +chrX 1163128 . A G, 933.64 . AS_QUALapprox=|941|0;AS_VarDP=29|33|0;BaseQRankSum=2.558;DP=65;MQRankSum=0.000;QUALapprox=941;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=0.586;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:29,33,0:62:99:941,0,730,1028,829,1857:11,18,12,21 +chrX 1163129 . G . . END=1163519 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1163520 . G T, 1042.64 . AS_QUALapprox=|1050|0;AS_VarDP=24|38|0;BaseQRankSum=-1.528;DP=65;MQRankSum=0.000;QUALapprox=1050;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=-1.070;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:24,38,0:62:99:1050,0,624,1122,737,1859:11,13,18,20 +chrX 1163521 . A . . END=1163638 GT:DP:GQ:MIN_DP:PL 0/0:42:66:42:0,66,990 +chrX 1163639 . A G, 539.64 . AS_QUALapprox=|547|0;AS_VarDP=10|14|0;BaseQRankSum=-1.161;DP=26;MQRankSum=0.000;QUALapprox=547;RAW_GT_COUNT=0,1,0;RAW_MQandDP=93600,26;ReadPosRankSum=0.000;VarDP=24 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:10,14,0:24:99:0|1:1163639_A_G:547,0,365,577,407,984:1163639:7,3,13,1 +chrX 1163640 . G . . END=1163642 GT:DP:GQ:MIN_DP:PL 0/0:22:60:22:0,60,900 +chrX 1163643 . G A, 542.64 . AS_QUALapprox=|550|0;AS_VarDP=9|14|0;BaseQRankSum=-0.740;DP=25;MQRankSum=0.000;QUALapprox=550;RAW_GT_COUNT=0,1,0;RAW_MQandDP=90000,25;ReadPosRankSum=0.167;VarDP=23 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:9,14,0:23:99:0|1:1163639_A_G:550,0,336,577,378,955:1163639:7,2,13,1 +chrX 1163644 . G . . END=1163674 GT:DP:GQ:MIN_DP:PL 0/0:18:21:17:0,21,315 +chrX 1163675 . GGGAGGGAC G, 351.01 . AS_QUALapprox=|365|0;AS_VarDP=0|9|0;DP=19;QUALapprox=365;RAW_GT_COUNT=0,0,1;RAW_MQandDP=68400,19;VarDP=9 GT:AD:DP:GQ:PL:SB 1/1:0,9,0:9:28:365,28,0,365,28,365:0,0,6,3 +chrX 1163684 . G . . END=1163795 GT:DP:GQ:MIN_DP:PL 0/0:14:22:8:0,22,268 +chrX 1163796 . G A, 721.64 . AS_QUALapprox=|729|0;AS_VarDP=16|19|0;BaseQRankSum=1.980;DP=36;MQRankSum=1.147;QUALapprox=729;RAW_GT_COUNT=0,1,0;RAW_MQandDP=128916,36;ReadPosRankSum=-0.949;VarDP=35 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:16,19,0:35:99:0|1:1163796_G_A:729,0,615,777,672,1449:1163796:10,6,12,7 +chrX 1163797 . G . . END=1163800 GT:DP:GQ:MIN_DP:PL 0/0:34:93:34:0,93,1395 +chrX 1163801 . GA G, 687.60 . AS_QUALapprox=|695|0;AS_VarDP=17|18|0;BaseQRankSum=0.216;DP=35;MQRankSum=1.086;QUALapprox=695;RAW_GT_COUNT=0,1,0;RAW_MQandDP=125316,35;ReadPosRankSum=-0.604;VarDP=35 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:17,18,0:35:99:0|1:1163796_G_A:695,0,648,746,702,1448:1163796:11,6,12,6 +chrX 1163803 . AAG A, 387.60 . AS_QUALapprox=|395|0;AS_VarDP=19|13|0;BaseQRankSum=-2.068;DP=38;MQRankSum=0.000;QUALapprox=395;RAW_GT_COUNT=0,1,0;RAW_MQandDP=136116,38;ReadPosRankSum=0.841;VarDP=32 GT:AD:DP:GQ:PL:SB 0/1:19,13,0:32:99:395,0,741,452,780,1233:13,6,9,4 +chrX 1163806 . A . . END=1163885 GT:DP:GQ:MIN_DP:PL 0/0:59:89:59:0,89,1268 +chrX 1163886 . T A, 2511.06 . AS_QUALapprox=|2525|0;AS_VarDP=0|57|0;DP=59;QUALapprox=2525;RAW_GT_COUNT=0,0,1;RAW_MQandDP=209584,59;VarDP=57 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,57,0:57:99:0|1:1163886_T_A:2525,172,0,2525,172,2525:1163886:0,0,32,25 +chrX 1163887 . G . . END=1163894 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,111,1665 +chrX 1163895 . T G, 2416.06 . AS_QUALapprox=|2430|0;AS_VarDP=0|54|0;DP=55;QUALapprox=2430;RAW_GT_COUNT=0,0,1;RAW_MQandDP=195184,55;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,54,0:54:99:0|1:1163886_T_A:2430,163,0,2430,163,2430:1163886:0,0,30,24 +chrX 1163896 . G . . END=1163914 GT:DP:GQ:MIN_DP:PL 0/0:53:84:53:0,84,1260 +chrX 1163915 . A G, 679.64 . AS_QUALapprox=|687|0;AS_VarDP=33|19|0;BaseQRankSum=-0.957;DP=53;MQRankSum=0.000;QUALapprox=687;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=-0.437;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:33,19,0:52:99:0|1:1163886_T_A:687,0,1327,786,1385,2171:1163886:18,15,13,6 +chrX 1163916 . C G, 679.64 . AS_QUALapprox=|687|0;AS_VarDP=33|19|0;BaseQRankSum=1.204;DP=53;MQRankSum=0.000;QUALapprox=687;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=-0.168;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:33,19,0:52:99:0|1:1163886_T_A:687,0,1327,786,1385,2171:1163886:18,15,13,6 +chrX 1163917 . A . . END=1163947 GT:DP:GQ:MIN_DP:PL 0/0:49:87:49:0,87,1305 +chrX 1163948 . GAACAGAACAGA G, 485.60 . AS_QUALapprox=|493|0;AS_VarDP=38|15|0;BaseQRankSum=-0.317;DP=55;MQRankSum=0.000;QUALapprox=493;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194841,55;ReadPosRankSum=0.540;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:38,15,0:53:99:0|1:1163886_T_A:493,0,1477,608,1523,2130:1163886:18,20,9,6 +chrX 1163960 . A . . END=1164614 GT:DP:GQ:MIN_DP:PL 0/0:55:62:55:0,62,1172 +chrX 1164615 . A G, 336.64 . AS_QUALapprox=|344|0;AS_VarDP=33|16|0;BaseQRankSum=-0.554;DP=54;MQRankSum=0.000;QUALapprox=344;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=0.683;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:33,16,0:49:99:344,0,904,443,952,1395:22,11,8,8 +chrX 1164616 . T . . END=1165115 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 1165116 . G A, 2295.06 . AS_QUALapprox=|2309|0;AS_VarDP=0|65|0;DP=65;QUALapprox=2309;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=65 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,65,0:65:99:0|1:1165116_G_A:2309,195,0,2309,195,2309:1165116:0,0,28,37 +chrX 1165117 . A . . END=1165149 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 1165150 . AATTT A, 1034.60 . AS_QUALapprox=|1042|0;AS_VarDP=41|28|0;BaseQRankSum=1.785;DP=73;MQRankSum=0.000;QUALapprox=1042;RAW_GT_COUNT=0,1,0;RAW_MQandDP=262800,73;ReadPosRankSum=-0.263;VarDP=69 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:41,28,0:69:99:0|1:1165116_G_A:1042,0,1637,1166,1722,2887:1165116:19,22,11,17 +chrX 1165155 . A . . END=1165165 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1165166 . T C, 1018.64 . AS_QUALapprox=|1026|0;AS_VarDP=43|28|0;BaseQRankSum=0.344;DP=73;MQRankSum=0.000;QUALapprox=1026;RAW_GT_COUNT=0,1,0;RAW_MQandDP=262800,73;ReadPosRankSum=0.114;VarDP=71 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:43,28,0:71:99:0|1:1165116_G_A:1026,0,1690,1156,1775,2930:1165116:21,22,12,16 +chrX 1165167 . A . . END=1165195 GT:DP:GQ:MIN_DP:PL 0/0:69:33:69:0,33,1800 +chrX 1165196 . T . . END=1165197 GT:DP:GQ:MIN_DP:PL 0/0:66:7:66:0,7,1681 +chrX 1165198 . A . . END=1165199 GT:DP:GQ:MIN_DP:PL 0/0:65:22:65:0,22,1792 +chrX 1165200 . G . . END=1165200 GT:DP:GQ:MIN_DP:PL 0/0:62:0:62:0,0,1486 +chrX 1165201 . T C, 1701.06 . AS_QUALapprox=|1715|0;AS_VarDP=0|55|0;DP=56;QUALapprox=1715;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1715,163,0,1715,163,1715:0,0,25,30 +chrX 1165202 . A . . END=1165243 GT:DP:GQ:MIN_DP:PL 0/0:51:78:51:0,78,1170 +chrX 1165244 . T TAATAAATTTATTAATTTATTAATTTATATTA, 3214.03 . AS_QUALapprox=|3228|0;AS_VarDP=0|72|0;DP=75;QUALapprox=3228;RAW_GT_COUNT=0,0,1;RAW_MQandDP=258642,75;VarDP=72 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,72,0:72:99:0|1:1165244_T_TAATAAATTTATTAATTTATTAATTTATATTA:3228,216,0,3228,217,3229:1165244:0,0,37,35 +chrX 1165245 . A . . END=1165256 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1165257 . T TATTA,TATTAATTTATTAATTTATATTAAATTAATTAATTTATTA, 3074.02 . AS_QUALapprox=|2537|2989|0;AS_VarDP=1|4|15|0;BaseQRankSum=1.863;DP=73;MQRankSum=-0.279;QUALapprox=3091;RAW_GT_COUNT=0,0,1;RAW_MQandDP=251442,73;ReadPosRankSum=-0.435;VarDP=20 GT:AD:DP:GQ:PL:SB 1/2:1,4,15,0:20:99:3091,723,554,299,0,102,2072,731,308,1915:0,1,11,8 +chrX 1165258 . A . . END=1165264 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 1165265 . T A, 2894.06 . AS_QUALapprox=|2908|0;AS_VarDP=1|66|0;BaseQRankSum=2.212;DP=69;MQRankSum=-0.292;QUALapprox=2908;RAW_GT_COUNT=0,0,1;RAW_MQandDP=239042,69;ReadPosRankSum=-1.280;VarDP=67 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:1,66,0:67:99:0|1:1165244_T_TAATAAATTTATTAATTTATTAATTTATATTA:2908,186,0,2911,199,2923:1165244:0,1,37,29 +chrX 1165266 . A . . END=1165344 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,117,1755 +chrX 1165345 . A ATATTTATATT, 2369.03 . AS_QUALapprox=|2383|0;AS_VarDP=1|54|0;BaseQRankSum=-0.330;DP=58;MQRankSum=0.000;QUALapprox=2383;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;ReadPosRankSum=1.607;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:1,54,0:55:99:0|1:1165345_A_ATATTTATATT:2383,120,0,2386,163,2428:1165345:0,1,33,21 +chrX 1165346 . T . . END=1165362 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,108,1620 +chrX 1165363 . C T, 1876.06 . AS_QUALapprox=|1890|0;AS_VarDP=0|42|0;DP=42;QUALapprox=1890;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151200,42;VarDP=42 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,42,0:42:99:0|1:1165345_A_ATATTTATATT:1890,126,0,1890,126,1890:1165345:0,0,24,18 +chrX 1165364 . A . . END=1165374 GT:DP:GQ:MIN_DP:PL 0/0:38:90:38:0,90,1191 +chrX 1165375 . T G, 1651.06 . AS_QUALapprox=|1665|0;AS_VarDP=0|37|0;DP=37;QUALapprox=1665;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133200,37;VarDP=37 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,37,0:37:99:0|1:1165345_A_ATATTTATATT:1665,111,0,1665,111,1665:1165345:0,0,20,17 +chrX 1165376 . T . . END=1165404 GT:DP:GQ:MIN_DP:PL 0/0:31:66:31:0,66,990 +chrX 1165405 . T TA, 1235.03 . AS_QUALapprox=|1249|0;AS_VarDP=0|28|0;DP=28;QUALapprox=1249;RAW_GT_COUNT=0,0,1;RAW_MQandDP=99136,28;VarDP=28 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,28,0:28:84:0|1:1165345_A_ATATTTATATT:1249,84,0,1249,84,1249:1165345:0,0,16,12 +chrX 1165406 . T . . END=1165463 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 1165464 . ATT A, 2631.03 . AS_QUALapprox=|2645|0;AS_VarDP=0|59|0;DP=60;QUALapprox=2645;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=59 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,59,0:59:99:0|1:1165464_ATT_A:2645,178,0,2645,178,2645:1165464:0,0,28,31 +chrX 1165467 . A . . END=1165470 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1165471 . A T, 2766.06 . AS_QUALapprox=|2780|0;AS_VarDP=0|62|0;DP=62;QUALapprox=2780;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=62 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,62,0:62:99:0|1:1165464_ATT_A:2780,187,0,2780,187,2780:1165464:0,0,29,33 +chrX 1165472 . T . . END=1165474 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1165475 . T G, 2883.06 . AS_QUALapprox=|2897|0;AS_VarDP=0|65|0;DP=65;QUALapprox=2897;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=65 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,65,0:65:99:0|1:1165464_ATT_A:2897,196,0,2897,196,2897:1165464:0,0,30,35 +chrX 1165476 . A AAT, 2883.03 . AS_QUALapprox=|2897|0;AS_VarDP=0|65|0;DP=65;QUALapprox=2897;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=65 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,65,0:65:99:0|1:1165464_ATT_A:2897,196,0,2897,196,2897:1165464:0,0,30,35 +chrX 1165477 . A . . END=1165559 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,115,1800 +chrX 1165560 . A G, 1996.06 . AS_QUALapprox=|2010|0;AS_VarDP=0|63|0;DP=65;QUALapprox=2010;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=63 GT:AD:DP:GQ:PL:SB 1/1:0,63,0:63:99:2010,188,0,2010,188,2010:0,0,27,36 +chrX 1165561 . A . . END=1165631 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 1165632 . G T, 2114.06 . AS_QUALapprox=|2128|0;AS_VarDP=0|64|0;DP=66;QUALapprox=2128;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=64 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:2128,192,0,2128,192,2128:0,0,30,34 +chrX 1165633 . A . . END=1165708 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 1165709 . TAATA T, 2836.03 . AS_QUALapprox=|2850|0;AS_VarDP=0|64|0;DP=69;QUALapprox=2850;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=64 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,64,0:64:99:0|1:1165709_TAATA_T:2850,193,0,2850,193,2850:1165709:0,0,34,30 +chrX 1165714 . A . . END=1165733 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 1165734 . A G, 2749.06 . AS_QUALapprox=|2763|0;AS_VarDP=0|64|0;DP=64;QUALapprox=2763;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=64 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,64,0:64:99:0|1:1165709_TAATA_T:2763,192,0,2763,192,2763:1165709:0,0,35,29 +chrX 1165735 . A . . END=1166066 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 1166067 . T G, 580.64 . AS_QUALapprox=|588|0;AS_VarDP=34|23|0;BaseQRankSum=0.806;DP=60;MQRankSum=0.000;QUALapprox=588;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=-0.838;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:34,23,0:57:99:588,0,920,690,989,1679:20,14,10,13 +chrX 1166068 . G . . END=1166297 GT:DP:GQ:MIN_DP:PL 0/0:64:48:64:0,48,720 +chrX 1166298 . G GAT,GATT, 1632.02 . AS_QUALapprox=|1567|1586|0;AS_VarDP=0|6|8|0;DP=43;QUALapprox=1649;RAW_GT_COUNT=0,0,1;RAW_MQandDP=144721,43;VarDP=14 GT:AD:DP:GQ:PL:SB 1/2:0,6,8,0:14:63:1649,205,82,187,0,63,1036,202,184,917:0,0,8,6 +chrX 1166299 . G T, 1675.06 . AS_QUALapprox=|1689|0;AS_VarDP=0|41|0;DP=43;QUALapprox=1689;RAW_GT_COUNT=0,0,1;RAW_MQandDP=144721,43;VarDP=41 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,41,0:41:99:0|1:1166299_G_T:1689,123,0,1689,123,1689:1166299:0,0,21,20 +chrX 1166300 . T . . END=1166310 GT:DP:GQ:MIN_DP:PL 0/0:36:45:36:0,45,675 +chrX 1166311 . G T, 1463.06 . AS_QUALapprox=|1477|0;AS_VarDP=0|35|0;DP=36;QUALapprox=1477;RAW_GT_COUNT=0,0,1;RAW_MQandDP=119521,36;VarDP=35 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,35,0:35:99:0|1:1166299_G_T:1477,105,0,1477,105,1477:1166299:0,0,17,18 +chrX 1166312 . T . . END=1166345 GT:DP:GQ:MIN_DP:PL 0/0:37:33:34:0,33,810 +chrX 1166346 . C T, 1830.06 . AS_QUALapprox=|1844|0;AS_VarDP=0|41|0;DP=41;QUALapprox=1844;RAW_GT_COUNT=0,0,1;RAW_MQandDP=138623,41;VarDP=41 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,41,0:41:99:0|1:1166346_C_T:1844,123,0,1844,123,1844:1166346:0,0,17,24 +chrX 1166347 . A . . END=1166353 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,120,1340 +chrX 1166354 . C T, 1920.06 . AS_QUALapprox=|1934|0;AS_VarDP=0|43|0;DP=43;QUALapprox=1934;RAW_GT_COUNT=0,0,1;RAW_MQandDP=145248,43;VarDP=43 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,43,0:43:99:0|1:1166346_C_T:1934,129,0,1934,129,1934:1166346:0,0,18,25 +chrX 1166355 . T . . END=1166363 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,120,1800 +chrX 1166364 . A G, 1944.06 . AS_QUALapprox=|1958|0;AS_VarDP=0|44|0;DP=45;QUALapprox=1958;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154448,45;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,44,0:44:99:0|1:1166346_C_T:1958,132,0,1958,132,1958:1166346:0,0,20,24 +chrX 1166365 . T . . END=1166391 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 1166392 . C T, 1555.06 . AS_QUALapprox=|1569|0;AS_VarDP=2|49|0;BaseQRankSum=3.289;DP=53;MQRankSum=-0.423;QUALapprox=1569;RAW_GT_COUNT=0,0,1;RAW_MQandDP=185248,53;ReadPosRankSum=0.996;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:2,49,0:51:99:1569,132,0,1574,146,1588:1,1,22,27 +chrX 1166393 . C . . END=1166445 GT:DP:GQ:MIN_DP:PL 0/0:53:72:53:0,72,1529 +chrX 1166446 . G T, 650.64 . AS_QUALapprox=|658|0;AS_VarDP=28|24|0;BaseQRankSum=1.307;DP=52;MQRankSum=-0.055;QUALapprox=658;RAW_GT_COUNT=0,1,0;RAW_MQandDP=186506,52;ReadPosRankSum=-0.588;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:28,24,0:52:99:658,0,757,742,829,1571:15,13,13,11 +chrX 1166447 . A . . END=1166568 GT:DP:GQ:MIN_DP:PL 0/0:49:96:49:0,96,1370 +chrX 1166569 . A . . END=1166605 GT:DP:GQ:MIN_DP:PL 0/0:54:0:54:0,0,1181 +chrX 1166606 . A C, 1534.06 . AS_QUALapprox=|1548|0;AS_VarDP=0|47|0;DP=57;QUALapprox=1548;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1548,141,0,1647,147,1922:0,0,24,23 +chrX 1166607 . G . . END=1166688 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,988 +chrX 1166689 . C A, 1594.06 . AS_QUALapprox=|1608|0;AS_VarDP=0|50|0;DP=60;QUALapprox=1608;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1608,149,0,1714,156,1974:0,0,37,13 +chrX 1166690 . A . . END=1166729 GT:DP:GQ:MIN_DP:PL 0/0:62:0:62:0,0,1245 +chrX 1166730 . T A, 2379.84 . AS_QUALapprox=|2407|0;AS_VarDP=0|56|0;DP=65;QUALapprox=2407;RAW_GT_COUNT=0,0,1;RAW_MQandDP=232000,65;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,56,0:56:99:0|1:1166730_T_A:2407,169,0,2426,172,2508:1166730:0,0,36,20 +chrX 1166731 . T . . END=1166753 GT:DP:GQ:MIN_DP:PL 0/0:62:0:62:0,0,1519 +chrX 1166754 . C T, 2571.05 . AS_QUALapprox=|2613|0;AS_VarDP=0|59|0;DP=67;QUALapprox=2613;RAW_GT_COUNT=0,0,1;RAW_MQandDP=239200,67;VarDP=59 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,59,0:59:99:0|1:1166730_T_A:2613,178,0,2620,178,2634:1166730:0,0,37,22 +chrX 1166755 . A . . END=1166774 GT:DP:GQ:MIN_DP:PL 0/0:64:0:64:0,0,1574 +chrX 1166775 . G A, 2720.05 . AS_QUALapprox=|2737|0;AS_VarDP=0|64|0;DP=73;QUALapprox=2737;RAW_GT_COUNT=0,0,1;RAW_MQandDP=260800,73;VarDP=64 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,64,0:64:99:0|1:1166730_T_A:2737,193,0,2766,199,2899:1166730:0,0,38,26 +chrX 1166776 . C . . END=1166812 GT:DP:GQ:MIN_DP:PL 0/0:65:0:65:0,0,1349 +chrX 1166813 . A . . END=1166961 GT:DP:GQ:MIN_DP:PL 0/0:58:30:58:0,30,1537 +chrX 1166962 . T A, 1494.06 . AS_QUALapprox=|1508|0;AS_VarDP=0|46|0;DP=47;QUALapprox=1508;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1508,137,0,1508,137,1508:0,0,16,30 +chrX 1166963 . A . . END=1167035 GT:DP:GQ:MIN_DP:PL 0/0:41:78:41:0,78,1170 +chrX 1167036 . ATATATAATATAT A, 813.60 . AS_QUALapprox=|821|0;AS_VarDP=23|22|0;BaseQRankSum=0.415;DP=48;MQRankSum=0.000;QUALapprox=821;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=-0.899;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:23,22,0:45:99:821,0,889,890,955,1845:12,11,10,12 +chrX 1167043 . ATATAT *,A, 818.01 . AS_QUALapprox=|0|910|0;AS_VarDP=0|22|20|0;DP=46;QUALapprox=1742;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;VarDP=42 GT:AD:DP:GQ:PL:SB 1/2:0,22,20,0:42:99:1742,828,889,890,0,832,1741,898,902,1799:0,0,19,23 +chrX 1167049 . T . . END=1167200 GT:DP:GQ:MIN_DP:PL 0/0:49:81:49:0,81,1215 +chrX 1167201 . ATATATTATATATAT A, 1700.03 . AS_QUALapprox=|1714|0;AS_VarDP=0|39|0;DP=43;QUALapprox=1714;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154800,43;VarDP=39 GT:AD:DP:GQ:PL:SB 1/1:0,39,0:39:99:1714,118,0,1714,118,1714:0,0,20,19 +chrX 1167216 . T . . END=1167296 GT:DP:GQ:MIN_DP:PL 0/0:47:54:47:0,54,1212 +chrX 1167297 . C T, 1551.06 . AS_QUALapprox=|1565|0;AS_VarDP=0|48|0;DP=51;QUALapprox=1565;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=48 GT:AD:DP:GQ:PL:SB 1/1:0,48,0:48:99:1565,144,0,1565,144,1565:0,0,26,22 +chrX 1167298 . A . . END=1167370 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,107,1309 +chrX 1167371 . C A, 1821.06 . AS_QUALapprox=|1835|0;AS_VarDP=0|56|0;DP=58;QUALapprox=1835;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1835,168,0,1835,168,1835:0,0,32,24 +chrX 1167372 . G . . END=1167939 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,111,1504 +chrX 1167940 . A . . END=1167940 GT:DP:GQ:MIN_DP:PL 0/0:58:0:58:0,0,1138 +chrX 1167941 . T . . END=1168002 GT:DP:GQ:MIN_DP:PL 0/0:63:80:63:0,80,1363 +chrX 1168003 . TTTTC T, 740.60 . AS_QUALapprox=|748|0;AS_VarDP=27|20|0;BaseQRankSum=0.388;DP=51;MQRankSum=0.000;QUALapprox=748;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-0.809;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:27,20,0:47:99:748,0,1040,830,1100,1930:12,15,5,15 +chrX 1168008 . T . . END=1168050 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,102,1530 +chrX 1168051 . CCCTT C, 581.60 . AS_QUALapprox=|589|0;AS_VarDP=21|16|0;BaseQRankSum=0.475;DP=44;MQRankSum=0.000;QUALapprox=589;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=-0.271;VarDP=37 GT:AD:DP:GQ:PL:SB 0/1:21,16,0:37:99:589,0,833,652,882,1534:6,15,5,11 +chrX 1168056 . C . . END=1168106 GT:DP:GQ:MIN_DP:PL 0/0:42:27:37:0,27,1017 +chrX 1168107 . A . . END=1168107 GT:DP:GQ:MIN_DP:PL 0/0:30:16:30:0,16,743 +chrX 1168108 . T . . END=1168234 GT:DP:GQ:MIN_DP:PL 0/0:41:24:35:0,24,948 +chrX 1168235 . C T, 1125.06 . AS_QUALapprox=|1139|0;AS_VarDP=0|35|0;DP=37;QUALapprox=1139;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133200,37;VarDP=35 GT:AD:DP:GQ:PL:SB 1/1:0,35,0:35:99:1139,105,0,1139,105,1139:0,0,18,17 +chrX 1168236 . C . . END=1168365 GT:DP:GQ:MIN_DP:PL 0/0:42:41:42:0,41,938 +chrX 1168366 . C CTCTT, 895.60 . AS_QUALapprox=|903|0;AS_VarDP=29|25|0;BaseQRankSum=0.198;DP=60;MQRankSum=0.000;QUALapprox=903;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=-0.417;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:29,25,0:54:99:903,0,1035,990,1110,2100:18,11,12,13 +chrX 1168367 . T . . END=1168483 GT:DP:GQ:MIN_DP:PL 0/0:64:64:64:0,64,1736 +chrX 1168484 . G C, 987.64 . AS_QUALapprox=|995|0;AS_VarDP=32|29|0;BaseQRankSum=1.099;DP=65;MQRankSum=-2.192;QUALapprox=995;RAW_GT_COUNT=0,1,0;RAW_MQandDP=222837,65;ReadPosRankSum=0.445;VarDP=61 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:32,29,0:61:99:0|1:1168484_G_C:995,0,1206,1091,1292,2384:1168484:17,15,21,8 +chrX 1168485 . C . . END=1168503 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 1168504 . AGC A, 1031.60 . AS_QUALapprox=|1039|0;AS_VarDP=28|27|0;BaseQRankSum=0.133;DP=57;MQRankSum=-3.494;QUALapprox=1039;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187893,57;ReadPosRankSum=-0.177;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,27,0:55:99:0|1:1168484_G_C:1039,0,1094,1124,1176,2299:1168484:14,14,18,9 +chrX 1168507 . G . . END=1168520 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 1168521 . C A, 1005.64 . AS_QUALapprox=|1013|0;AS_VarDP=26|26|0;BaseQRankSum=-0.740;DP=53;MQRankSum=-3.448;QUALapprox=1013;RAW_GT_COUNT=0,1,0;RAW_MQandDP=173493,53;ReadPosRankSum=-0.951;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,26,0:52:99:0|1:1168484_G_C:1013,0,1013,1092,1092,2183:1168484:12,14,16,10 +chrX 1168522 . A G, 963.64 . AS_QUALapprox=|971|0;AS_VarDP=26|25|0;BaseQRankSum=-2.094;DP=52;MQRankSum=-3.522;QUALapprox=971;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169893,52;ReadPosRankSum=-1.231;VarDP=51 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,25,0:51:99:0|1:1168484_G_C:971,0,1006,1050,1081,2131:1168484:12,14,15,10 +chrX 1168523 . C . . END=1168542 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 1168543 . C A, 956.64 . AS_QUALapprox=|964|0;AS_VarDP=29|26|0;BaseQRankSum=-0.378;DP=56;MQRankSum=-3.404;QUALapprox=964;RAW_GT_COUNT=0,1,0;RAW_MQandDP=185189,56;ReadPosRankSum=-0.363;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,26,0:55:99:0|1:1168484_G_C:964,0,1058,1051,1136,2187:1168484:14,15,14,12 +chrX 1168544 . T . . END=1168887 GT:DP:GQ:MIN_DP:PL 0/0:56:66:56:0,66,957 +chrX 1168888 . T C, 755.06 . AS_QUALapprox=|769|0;AS_VarDP=0|25|0;DP=39;QUALapprox=769;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140400,39;VarDP=25 GT:AD:DP:GQ:PL:SB 1/1:0,25,0:25:75:769,75,0,769,75,769:0,0,11,14 +chrX 1168889 . A . . END=1168969 GT:DP:GQ:MIN_DP:PL 0/0:21:25:20:0,25,545 +chrX 1168970 . A . . END=1168971 GT:DP:GQ:MIN_DP:PL 0/0:23:0:23:0,0,556 +chrX 1168972 . G . . END=1168972 GT:DP:GQ:MIN_DP:PL 0/0:24:60:24:0,60,900 +chrX 1168973 . A . . END=1168977 GT:DP:GQ:MIN_DP:PL 0/0:21:0:21:0,0,387 +chrX 1168978 . G . . END=1168978 GT:DP:GQ:MIN_DP:PL 0/0:21:63:21:0,63,670 +chrX 1168979 . G . . END=1168984 GT:DP:GQ:MIN_DP:PL 0/0:23:0:23:0,0,440 +chrX 1168985 . G . . END=1168986 GT:DP:GQ:MIN_DP:PL 0/0:21:28:21:0,28,630 +chrX 1168987 . A . . END=1168988 GT:DP:GQ:MIN_DP:PL 0/0:22:0:22:0,0,516 +chrX 1168989 . G . . END=1168989 GT:DP:GQ:MIN_DP:PL 0/0:21:28:21:0,28,640 +chrX 1168990 . A . . END=1168992 GT:DP:GQ:MIN_DP:PL 0/0:22:0:22:0,0,486 +chrX 1168993 . G . . END=1168994 GT:DP:GQ:MIN_DP:PL 0/0:22:31:22:0,31,655 +chrX 1168995 . G . . END=1168996 GT:DP:GQ:MIN_DP:PL 0/0:21:0:21:0,0,406 +chrX 1168997 . G . . END=1168997 GT:DP:GQ:MIN_DP:PL 0/0:19:36:19:0,36,540 +chrX 1168998 . A . . END=1168999 GT:DP:GQ:MIN_DP:PL 0/0:21:0:21:0,0,375 +chrX 1169000 . G . . END=1169002 GT:DP:GQ:MIN_DP:PL 0/0:23:21:23:0,21,315 +chrX 1169003 . G . . END=1169023 GT:DP:GQ:MIN_DP:PL 0/0:20:0:20:0,0,0 +chrX 1169024 . A . . END=1169026 GT:DP:GQ:MIN_DP:PL 0/0:20:24:20:0,24,360 +chrX 1169027 . A . . END=1169029 GT:DP:GQ:MIN_DP:PL 0/0:20:0:20:0,0,0 +chrX 1169030 . A . . END=1169030 GT:DP:GQ:MIN_DP:PL 0/0:20:27:20:0,27,405 +chrX 1169031 . A . . END=1169033 GT:DP:GQ:MIN_DP:PL 0/0:22:0:22:0,0,0 +chrX 1169034 . G . . END=1169034 GT:DP:GQ:MIN_DP:PL 0/0:22:33:22:0,33,495 +chrX 1169035 . A . . END=1169038 GT:DP:GQ:MIN_DP:PL 0/0:23:0:23:0,0,0 +chrX 1169039 . G . . END=1169039 GT:DP:GQ:MIN_DP:PL 0/0:25:36:25:0,36,540 +chrX 1169040 . G . . END=1169040 GT:DP:GQ:MIN_DP:PL 0/0:25:0:25:0,0,154 +chrX 1169041 . A . . END=1169041 GT:DP:GQ:MIN_DP:PL 0/0:25:36:25:0,36,540 +chrX 1169042 . G . . END=1169043 GT:DP:GQ:MIN_DP:PL 0/0:26:0:26:0,0,54 +chrX 1169044 . A . . END=1169046 GT:DP:GQ:MIN_DP:PL 0/0:27:42:27:0,42,630 +chrX 1169047 . T . . END=1169048 GT:DP:GQ:MIN_DP:PL 0/0:24:0:24:0,0,0 +chrX 1169049 . G . . END=1169051 GT:DP:GQ:MIN_DP:PL 0/0:26:43:26:0,43,675 +chrX 1169052 . G . . END=1169054 GT:DP:GQ:MIN_DP:PL 0/0:25:0:25:0,0,168 +chrX 1169055 . G . . END=1169056 GT:DP:GQ:MIN_DP:PL 0/0:24:48:24:0,48,720 +chrX 1169057 . A . . END=1169063 GT:DP:GQ:MIN_DP:PL 0/0:25:0:25:0,0,212 +chrX 1169064 . G . . END=1169064 GT:DP:GQ:MIN_DP:PL 0/0:25:48:25:0,48,720 +chrX 1169065 . G . . END=1169065 GT:DP:GQ:MIN_DP:PL 0/0:25:0:25:0,0,262 +chrX 1169066 . A . . END=1169066 GT:DP:GQ:MIN_DP:PL 0/0:24:48:24:0,48,720 +chrX 1169067 . T . . END=1169069 GT:DP:GQ:MIN_DP:PL 0/0:21:0:21:0,0,92 +chrX 1169070 . G . . END=1169070 GT:DP:GQ:MIN_DP:PL 0/0:23:45:23:0,45,675 +chrX 1169071 . G . . END=1169072 GT:DP:GQ:MIN_DP:PL 0/0:23:0:23:0,0,197 +chrX 1169073 . G . . END=1169074 GT:DP:GQ:MIN_DP:PL 0/0:20:43:20:0,43,581 +chrX 1169075 . A . . END=1169076 GT:DP:GQ:MIN_DP:PL 0/0:23:0:23:0,0,218 +chrX 1169077 . A . . END=1169077 GT:DP:GQ:MIN_DP:PL 0/0:22:48:22:0,48,720 +chrX 1169078 . G . . END=1169078 GT:DP:GQ:MIN_DP:PL 0/0:24:0:24:0,0,297 +chrX 1169079 . G . . END=1169080 GT:DP:GQ:MIN_DP:PL 0/0:24:23:24:0,23,645 +chrX 1169081 . T . . END=1169083 GT:DP:GQ:MIN_DP:PL 0/0:22:0:22:0,0,124 +chrX 1169084 . G . . END=1169084 GT:DP:GQ:MIN_DP:PL 0/0:23:51:23:0,51,765 +chrX 1169085 . A . . END=1169086 GT:DP:GQ:MIN_DP:PL 0/0:21:0:21:0,0,228 +chrX 1169087 . G . . END=1169088 GT:DP:GQ:MIN_DP:PL 0/0:19:51:19:0,51,561 +chrX 1169089 . G . . END=1169090 GT:DP:GQ:MIN_DP:PL 0/0:19:0:19:0,0,246 +chrX 1169091 . G . . END=1169091 GT:DP:GQ:MIN_DP:PL 0/0:21:48:21:0,48,720 +chrX 1169092 . G . . END=1169095 GT:DP:GQ:MIN_DP:PL 0/0:20:0:20:0,0,322 +chrX 1169096 . G . . END=1169096 GT:DP:GQ:MIN_DP:PL 0/0:20:48:20:0,48,720 +chrX 1169097 . T . . END=1169099 GT:DP:GQ:MIN_DP:PL 0/0:19:0:19:0,0,213 +chrX 1169100 . G . . END=1169107 GT:DP:GQ:MIN_DP:PL 0/0:19:22:19:0,22,540 +chrX 1169108 . A . . END=1169108 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,356 +chrX 1169109 . G . . END=1169110 GT:DP:GQ:MIN_DP:PL 0/0:18:22:16:0,22,506 +chrX 1169111 . G . . END=1169112 GT:DP:GQ:MIN_DP:PL 0/0:18:5:18:0,5,447 +chrX 1169113 . A . . END=1169116 GT:DP:GQ:MIN_DP:PL 0/0:20:25:19:0,25,516 +chrX 1169117 . A . . END=1169118 GT:DP:GQ:MIN_DP:PL 0/0:17:16:17:0,16,481 +chrX 1169119 . G . . END=1169119 GT:DP:GQ:MIN_DP:PL 0/0:17:51:17:0,51,581 +chrX 1169120 . A . . END=1169120 GT:DP:GQ:MIN_DP:PL 0/0:19:8:19:0,8,522 +chrX 1169121 . G . . END=1169125 GT:DP:GQ:MIN_DP:PL 0/0:19:22:18:0,22,571 +chrX 1169126 . T . . END=1169126 GT:DP:GQ:MIN_DP:PL 0/0:18:0:18:0,0,407 +chrX 1169127 . G . . END=1169131 GT:DP:GQ:MIN_DP:PL 0/0:19:22:19:0,22,540 +chrX 1169132 . C . . END=1169133 GT:DP:GQ:MIN_DP:PL 0/0:17:10:17:0,10,411 +chrX 1169134 . A . . END=1169134 GT:DP:GQ:MIN_DP:PL 0/0:19:22:19:0,22,540 +chrX 1169135 . GGGA G, 477.60 . AS_QUALapprox=|485|0;AS_VarDP=2|12|0;BaseQRankSum=0.000;DP=24;MQRankSum=0.000;QUALapprox=485;RAW_GT_COUNT=0,1,0;RAW_MQandDP=82358,24;ReadPosRankSum=0.267;VarDP=14 GT:AD:DP:GQ:PL:SB 0/1:2,12,0:14:42:485,0,42,491,78,569:2,0,12,0 +chrX 1169139 . G . . END=1169185 GT:DP:GQ:MIN_DP:PL 0/0:19:22:15:0,22,421 +chrX 1169186 . A . . END=1169186 GT:DP:GQ:MIN_DP:PL 0/0:20:0:20:0,0,456 +chrX 1169187 . G . . END=1169210 GT:DP:GQ:MIN_DP:PL 0/0:20:42:20:0,42,584 +chrX 1169211 . G A, 351.64 . AS_QUALapprox=|359|0;AS_VarDP=7|12|0;BaseQRankSum=0.000;DP=29;MQRankSum=0.000;QUALapprox=359;RAW_GT_COUNT=0,1,0;RAW_MQandDP=101989,29;ReadPosRankSum=0.550;VarDP=19 GT:AD:DP:GQ:PL:SB 0/1:7,12,0:19:99:359,0,186,380,222,602:6,1,10,2 +chrX 1169212 . G . . END=1169269 GT:DP:GQ:MIN_DP:PL 0/0:20:25:19:0,25,540 +chrX 1169270 . GA G, 897.03 . AS_QUALapprox=|911|0;AS_VarDP=0|21|0;DP=29;QUALapprox=911;RAW_GT_COUNT=0,0,1;RAW_MQandDP=96917,29;VarDP=21 GT:AD:DP:GQ:PL:SB 1/1:0,21,0:21:63:911,63,0,911,63,911:0,0,20,1 +chrX 1169272 . G . . END=1169277 GT:DP:GQ:MIN_DP:PL 0/0:21:28:21:0,28,630 +chrX 1169278 . A AAGGAGGAGGGAGG,AAGGAGGAGGGAGGAGGAGGAGGGAGG, 988.02 . AS_QUALapprox=|785|739|0;AS_VarDP=0|7|6|0;DP=36;QUALapprox=1005;RAW_GT_COUNT=0,0,1;RAW_MQandDP=107596,36;VarDP=13 GT:AD:DP:GQ:PL:SB 1/2:0,7,6,0:13:99:1005,278,220,319,0,266,802,276,318,766:0,0,13,0 +chrX 1169279 . A . . END=1169287 GT:DP:GQ:MIN_DP:PL 0/0:22:28:21:0,28,580 +chrX 1169288 . G . . END=1169289 GT:DP:GQ:MIN_DP:PL 0/0:21:3:21:0,3,520 +chrX 1169290 . G . . END=1169291 GT:DP:GQ:MIN_DP:PL 0/0:20:25:20:0,25,585 +chrX 1169292 . A . . END=1169292 GT:DP:GQ:MIN_DP:PL 0/0:19:0:19:0,0,471 +chrX 1169293 . G . . END=1169306 GT:DP:GQ:MIN_DP:PL 0/0:20:22:18:0,22,540 +chrX 1169307 . G . . END=1169308 GT:DP:GQ:MIN_DP:PL 0/0:18:19:18:0,19,506 +chrX 1169309 . G . . END=1169320 GT:DP:GQ:MIN_DP:PL 0/0:19:22:18:0,22,500 +chrX 1169321 . A . . END=1169321 GT:DP:GQ:MIN_DP:PL 0/0:17:16:17:0,16,481 +chrX 1169322 . G . . END=1169323 GT:DP:GQ:MIN_DP:PL 0/0:18:42:18:0,42,630 +chrX 1169324 . G . . END=1169325 GT:DP:GQ:MIN_DP:PL 0/0:18:19:18:0,19,516 +chrX 1169326 . G . . END=1169330 GT:DP:GQ:MIN_DP:PL 0/0:18:26:17:0,26,532 +chrX 1169331 . A . . END=1169332 GT:DP:GQ:MIN_DP:PL 0/0:18:16:18:0,16,516 +chrX 1169333 . A . . END=1169335 GT:DP:GQ:MIN_DP:PL 0/0:18:26:18:0,26,481 +chrX 1169336 . T . . END=1169336 GT:DP:GQ:MIN_DP:PL 0/0:16:13:16:0,13,426 +chrX 1169337 . G . . END=1169347 GT:DP:GQ:MIN_DP:PL 0/0:18:23:17:0,23,446 +chrX 1169348 . A . . END=1169349 GT:DP:GQ:MIN_DP:PL 0/0:16:17:16:0,17,417 +chrX 1169350 . G . . END=1169352 GT:DP:GQ:MIN_DP:PL 0/0:19:22:19:0,22,571 +chrX 1169353 . A . . END=1169353 GT:DP:GQ:MIN_DP:PL 0/0:18:19:18:0,19,526 +chrX 1169354 . G . . END=1169355 GT:DP:GQ:MIN_DP:PL 0/0:20:35:19:0,35,605 +chrX 1169356 . A . . END=1169356 GT:DP:GQ:MIN_DP:PL 0/0:21:0:21:0,0,561 +chrX 1169357 . G . . END=1169425 GT:DP:GQ:MIN_DP:PL 0/0:22:28:21:0,28,625 +chrX 1169426 . G T, 1718.06 . AS_QUALapprox=|1732|0;AS_VarDP=0|52|0;DP=58;QUALapprox=1732;RAW_GT_COUNT=0,0,1;RAW_MQandDP=202658,58;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1732,156,0,1732,156,1732:0,0,34,18 +chrX 1169427 . T . . END=1169476 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 1169477 . A . . END=1169477 GT:DP:GQ:MIN_DP:PL 0/0:70:0:70:0,0,139 +chrX 1169478 . A . . END=1169515 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,116,1767 +chrX 1169516 . GGCTTTCAAATTTATTTCTTGCTTCCGTGATAATTGTCTTTCAAATGCATTTCTTGCTTTCTTGGAAATTA G, 43.60 . AS_QUALapprox=|51|0;AS_VarDP=2|2|0;BaseQRankSum=0.000;DP=49;MQRankSum=-1.383;QUALapprox=51;RAW_GT_COUNT=0,1,0;RAW_MQandDP=163595,49;ReadPosRankSum=-1.383;VarDP=4 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:2,2,0:4:51:0|1:1169516_GGCTTTCAAATTTATTTCTTGCTTCCGTGATAATTGTCTTTCAAATGCATTTCTTGCTTTCTTGGAAATTA_G:51,0,55,57,64,120:1169516:2,0,1,1 +chrX 1169517 . G *,T, 58.01 . AS_QUALapprox=|0|1352|0;AS_VarDP=0|2|2|0;DP=44;QUALapprox=1403;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147296,44;VarDP=4 GT:AD:DP:GQ:PL:SB 1/2:0,2,2,0:4:51:1403,178,55,176,0,51,1318,177,173,1298:0,0,3,1 +chrX 1169587 . T . . END=1169597 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,0 +chrX 1169598 . C *,T, 115.04 . AS_QUALapprox=|0|238|0;AS_VarDP=3|0|2|0;BaseQRankSum=0.000;DP=25;MQRankSum=-1.036;QUALapprox=238;RAW_GT_COUNT=0,1,0;RAW_MQandDP=72621,25;ReadPosRankSum=-1.383;VarDP=5 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|2:3,0,2,0:5:38:0|1:1169516_GGCTTTCAAATTTATTTCTTGCTTCCGTGATAATTGTCTTTCAAATGCATTTCTTGCTTTCTTGGAAATTA_G:238,95,508,0,85,38,266,435,100,581:1169516:3,0,1,1 +chrX 1169599 . A . . END=1169605 GT:DP:GQ:MIN_DP:PL 0/0:21:54:19:0,54,610 +chrX 1169606 . G *,T, 2.49 . AS_QUALapprox=|0|10|0;AS_VarDP=0|0|0|0;DP=22;QUALapprox=10;RAW_GT_COUNT=0,1,0;RAW_MQandDP=59245,22;VarDP=17 GT:AD:DP:GQ:PL:SB 0/2:17,0,0,0:17:4:10,4,552,0,535,597,39,556,580,609:8,9,0,0 +chrX 1169607 . C . . END=1169812 GT:DP:GQ:MIN_DP:PL 0/0:46:41:46:0,41,640 +chrX 1169813 . CT C, 1160.03 . AS_QUALapprox=|1174|0;AS_VarDP=2|43|0;BaseQRankSum=1.349;DP=51;MQRankSum=0.000;QUALapprox=1174;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;ReadPosRankSum=1.419;VarDP=45 GT:AD:DP:GQ:PL:SB 1/1:2,43,0:45:90:1174,90,0,1180,129,1219:1,1,22,21 +chrX 1169815 . T . . END=1170011 GT:DP:GQ:MIN_DP:PL 0/0:47:74:47:0,74,1177 +chrX 1170012 . G . . END=1170012 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,1176 +chrX 1170013 . T . . END=1170037 GT:DP:GQ:MIN_DP:PL 0/0:49:41:49:0,41,1212 +chrX 1170038 . A . . END=1170038 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,1106 +chrX 1170039 . T . . END=1170040 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 1170041 . A . . END=1170041 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,1125 +chrX 1170042 . T . . END=1170080 GT:DP:GQ:MIN_DP:PL 0/0:50:43:50:0,43,1211 +chrX 1170081 . C . . END=1170081 GT:DP:GQ:MIN_DP:PL 0/0:50:6:50:0,6,1289 +chrX 1170082 . T . . END=1170087 GT:DP:GQ:MIN_DP:PL 0/0:53:87:53:0,87,1305 +chrX 1170088 . TTC T, 353.60 . AS_QUALapprox=|361|0;AS_VarDP=5|14|0;BaseQRankSum=0.781;DP=34;MQRankSum=0.000;QUALapprox=361;RAW_GT_COUNT=0,1,0;RAW_MQandDP=120025,34;ReadPosRankSum=-0.186;VarDP=19 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:5,14,0:19:51:0|1:1170088_TTC_T:361,0,51,376,93,469:1170088:5,0,6,8 +chrX 1170090 . C *,T, 54.01 . AS_QUALapprox=|0|701|0;AS_VarDP=0|14|5|0;DP=34;QUALapprox=1062;RAW_GT_COUNT=0,0,1;RAW_MQandDP=120025,34;VarDP=19 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 2|1:0,14,5,0:19:51:1|0:1170088_TTC_T:1062,148,51,454,0,361,839,142,441,766:1170088:0,0,11,8 +chrX 1170091 . T . . END=1170106 GT:DP:GQ:MIN_DP:PL 0/0:35:22:35:0,22,850 +chrX 1170107 . C . . END=1170107 GT:DP:GQ:MIN_DP:PL 0/0:37:2:37:0,2,948 +chrX 1170108 . G . . END=1170497 GT:DP:GQ:MIN_DP:PL 0/0:58:46:58:0,46,972 +chrX 1170498 . G A, 703.64 . AS_QUALapprox=|711|0;AS_VarDP=41|29|0;BaseQRankSum=-0.155;DP=72;MQRankSum=0.000;QUALapprox=711;RAW_GT_COUNT=0,1,0;RAW_MQandDP=259200,72;ReadPosRankSum=-0.072;VarDP=70 GT:AD:DP:GQ:PL:SB 0/1:41,29,0:70:99:711,0,1094,833,1181,2014:21,20,13,16 +chrX 1170499 . A . . END=1171073 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 1171074 . G T, 534.64 . AS_QUALapprox=|542|0;AS_VarDP=35|21|0;BaseQRankSum=1.037;DP=57;MQRankSum=0.000;QUALapprox=542;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=0.034;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:35,21,0:56:99:542,0,978,647,1041,1688:12,23,10,11 +chrX 1171075 . G . . END=1172162 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,108,1304 +chrX 1172163 . C T, 1490.06 . AS_QUALapprox=|1504|0;AS_VarDP=0|45|0;DP=45;QUALapprox=1504;RAW_GT_COUNT=0,0,1;RAW_MQandDP=161764,45;VarDP=45 GT:AD:DP:GQ:PL:SB 1/1:0,45,0:45:99:1504,135,0,1504,135,1504:0,0,16,29 +chrX 1172164 . G . . END=1172370 GT:DP:GQ:MIN_DP:PL 0/0:43:89:43:0,89,1229 +chrX 1172371 . C A, 469.64 . AS_QUALapprox=|477|0;AS_VarDP=21|17|0;BaseQRankSum=1.327;DP=38;MQRankSum=0.000;QUALapprox=477;RAW_GT_COUNT=0,1,0;RAW_MQandDP=136800,38;ReadPosRankSum=-1.440;VarDP=38 GT:AD:DP:GQ:PL:SB 0/1:21,17,0:38:99:477,0,581,540,632,1172:15,6,9,8 +chrX 1172372 . T . . END=1172434 GT:DP:GQ:MIN_DP:PL 0/0:36:83:36:0,83,1002 +chrX 1172435 . T G, 405.64 . AS_QUALapprox=|413|0;AS_VarDP=19|16|0;BaseQRankSum=-1.523;DP=39;MQRankSum=0.000;QUALapprox=413;RAW_GT_COUNT=0,1,0;RAW_MQandDP=140400,39;ReadPosRankSum=0.133;VarDP=35 GT:AD:DP:GQ:PL:SB 0/1:19,16,0:35:99:413,0,532,470,580,1050:8,11,10,6 +chrX 1172436 . T . . END=1172509 GT:DP:GQ:MIN_DP:PL 0/0:36:79:36:0,79,948 +chrX 1172510 . C G, 933.64 . AS_QUALapprox=|941|0;AS_VarDP=24|25|0;BaseQRankSum=1.215;DP=50;MQRankSum=0.000;QUALapprox=941;RAW_GT_COUNT=0,1,0;RAW_MQandDP=178081,50;ReadPosRankSum=-1.001;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,25,0:49:99:0|1:1172510_C_G:941,0,909,1014,984,1998:1172510:9,15,14,11 +chrX 1172511 . G . . END=1172512 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,116,1463 +chrX 1172513 . T G, 933.64 . AS_QUALapprox=|941|0;AS_VarDP=24|25|0;BaseQRankSum=-0.734;DP=50;MQRankSum=0.000;QUALapprox=941;RAW_GT_COUNT=0,1,0;RAW_MQandDP=178081,50;ReadPosRankSum=-1.267;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,25,0:49:99:0|1:1172510_C_G:941,0,909,1014,984,1998:1172510:9,15,14,11 +chrX 1172514 . G . . END=1173462 GT:DP:GQ:MIN_DP:PL 0/0:53:67:53:0,67,1022 +chrX 1173463 . C G, 1806.06 . AS_QUALapprox=|1820|0;AS_VarDP=0|58|0;DP=60;QUALapprox=1820;RAW_GT_COUNT=0,0,1;RAW_MQandDP=206014,60;VarDP=58 GT:AD:DP:GQ:PL:SB 1/1:0,58,0:58:99:1820,173,0,1820,173,1820:0,0,35,23 +chrX 1173464 . G . . END=1173474 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1173475 . G T,A, 2037.06 . AS_QUALapprox=|0|2051|0;AS_VarDP=0|0|56|0;DP=57;QUALapprox=2051;RAW_GT_COUNT=0,0,1;RAW_MQandDP=195214,57;VarDP=56 GT:AD:DP:GQ:PL:SB 2/2:0,0,56,0:56:99:2051,2152,2565,168,172,0,2128,2385,172,2308:0,0,30,26 +chrX 1173476 . C . . END=1173482 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1173483 . G A, 629.64 . AS_QUALapprox=|637|0;AS_VarDP=28|25|0;BaseQRankSum=1.594;DP=56;MQRankSum=-0.944;QUALapprox=637;RAW_GT_COUNT=0,1,0;RAW_MQandDP=188543,56;ReadPosRankSum=1.364;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:28,25,0:53:99:637,0,670,720,745,1465:13,15,15,10 +chrX 1173484 . A . . END=1173763 GT:DP:GQ:MIN_DP:PL 0/0:74:99:74:0,120,1800 +chrX 1173764 . C . . END=1173764 GT:DP:GQ:MIN_DP:PL 0/0:70:0:70:0,0,0 +chrX 1173765 . A . . END=1173765 GT:DP:GQ:MIN_DP:PL 0/0:90:99:90:0,120,1800 +chrX 1173766 . C . . END=1173766 GT:DP:GQ:MIN_DP:PL 0/0:69:0:69:0,0,0 +chrX 1173767 . G . . END=1173772 GT:DP:GQ:MIN_DP:PL 0/0:92:99:92:0,120,1800 +chrX 1173773 . C . . END=1173773 GT:DP:GQ:MIN_DP:PL 0/0:74:0:74:0,0,0 +chrX 1173774 . G . . END=1173809 GT:DP:GQ:MIN_DP:PL 0/0:85:99:85:0,120,1800 +chrX 1173810 . C . . END=1173810 GT:DP:GQ:MIN_DP:PL 0/0:75:0:75:0,0,603 +chrX 1173811 . G . . END=1173811 GT:DP:GQ:MIN_DP:PL 0/0:73:99:73:0,120,1800 +chrX 1173812 . G . . END=1173812 GT:DP:GQ:MIN_DP:PL 0/0:70:0:70:0,0,0 +chrX 1173813 . T . . END=1173831 GT:DP:GQ:MIN_DP:PL 0/0:74:99:74:0,120,1800 +chrX 1173832 . T . . END=1173832 GT:DP:GQ:MIN_DP:PL 0/0:60:0:60:0,0,0 +chrX 1173833 . C . . END=1173851 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 1173852 . T . . END=1173853 GT:DP:GQ:MIN_DP:PL 0/0:55:0:55:0,0,0 +chrX 1173854 . A . . END=1173857 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 1173858 . G . . END=1173858 GT:DP:GQ:MIN_DP:PL 0/0:58:0:58:0,0,0 +chrX 1173859 . A . . END=1173925 GT:DP:GQ:MIN_DP:PL 0/0:26:35:24:0,35,745 +chrX 1173926 . G . . END=1173926 GT:DP:GQ:MIN_DP:PL 0/0:24:12:24:0,12,645 +chrX 1173927 . G . . END=1174017 GT:DP:GQ:MIN_DP:PL 0/0:19:31:15:0,31,462 +chrX 1174018 . C . . END=1174018 GT:DP:GQ:MIN_DP:PL 0/0:14:7:14:0,7,387 +chrX 1174019 . G . . END=1174029 GT:DP:GQ:MIN_DP:PL 0/0:14:33:14:0,33,487 +chrX 1174030 . T . . END=1174030 GT:DP:GQ:MIN_DP:PL 0/0:14:7:14:0,7,377 +chrX 1174031 . G . . END=1174041 GT:DP:GQ:MIN_DP:PL 0/0:15:20:12:0,20,382 +chrX 1174042 . A . . END=1174042 GT:DP:GQ:MIN_DP:PL 0/0:11:19:11:0,19,333 +chrX 1174043 . A . . END=1174046 GT:DP:GQ:MIN_DP:PL 0/0:11:33:11:0,33,331 +chrX 1174047 . A . . END=1174047 GT:DP:GQ:MIN_DP:PL 0/0:11:8:11:0,8,323 +chrX 1174048 . T . . END=1174065 GT:DP:GQ:MIN_DP:PL 0/0:11:27:10:0,27,327 +chrX 1174066 . G . . END=1174649 GT:DP:GQ:MIN_DP:PL 0/0:0:0:0:0,0,0 +chrX 1174650 . G . . END=1174653 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,223 +chrX 1174654 . T . . END=1174654 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,199 +chrX 1174655 . G . . END=1174663 GT:DP:GQ:MIN_DP:PL 0/0:11:27:9:0,27,293 +chrX 1174664 . T . . END=1174664 GT:DP:GQ:MIN_DP:PL 0/0:14:17:14:0,17,427 +chrX 1174665 . C . . END=1174684 GT:DP:GQ:MIN_DP:PL 0/0:17:39:13:0,39,452 +chrX 1174685 . G T, 497.64 . AS_QUALapprox=|505|0;AS_VarDP=5|17|0;BaseQRankSum=0.000;DP=23;MQRankSum=0.204;QUALapprox=505;RAW_GT_COUNT=0,1,0;RAW_MQandDP=27737,23;ReadPosRankSum=-0.470;VarDP=22 GT:AD:DP:GQ:PL:SB 0/1:5,17,0:22:99:505,0,103,520,154,674:5,0,17,0 +chrX 1174686 . A . . END=1174903 GT:DP:GQ:MIN_DP:PL 0/0:64:55:64:0,55,814 +chrX 1174904 . G A, 755.64 . AS_QUALapprox=|763|0;AS_VarDP=36|29|0;BaseQRankSum=2.383;DP=70;MQRankSum=0.171;QUALapprox=763;RAW_GT_COUNT=0,1,0;RAW_MQandDP=246542,70;ReadPosRankSum=1.142;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:36,29,0:65:99:763,0,892,870,979,1849:16,20,13,16 +chrX 1174905 . C . . END=1175512 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,112,1618 +chrX 1175513 . G A, 1946.06 . AS_QUALapprox=|1960|0;AS_VarDP=0|61|0;DP=67;QUALapprox=1960;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=61 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:1960,182,0,1960,182,1960:0,0,29,32 +chrX 1175514 . T . . END=1175581 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1175582 . CT C, 1698.03 . AS_QUALapprox=|1712|0;AS_VarDP=0|55|0;DP=60;QUALapprox=1712;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1712,165,0,1712,165,1712:0,0,23,32 +chrX 1175584 . T . . END=1175793 GT:DP:GQ:MIN_DP:PL 0/0:45:21:43:0,21,900 +chrX 1175794 . A . . END=1175799 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,68 +chrX 1175800 . A . . END=1175800 GT:DP:GQ:MIN_DP:PL 0/0:41:51:41:0,51,765 +chrX 1175801 . T . . END=1175803 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,0 +chrX 1175804 . T . . END=1175832 GT:DP:GQ:MIN_DP:PL 0/0:39:62:39:0,62,1040 +chrX 1175833 . A . . END=1175842 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,0 +chrX 1175843 . T . . END=1175858 GT:DP:GQ:MIN_DP:PL 0/0:39:86:39:0,86,1145 +chrX 1175859 . G . . END=1175859 GT:DP:GQ:MIN_DP:PL 0/0:35:6:35:0,6,828 +chrX 1175860 . A . . END=1175869 GT:DP:GQ:MIN_DP:PL 0/0:40:38:36:0,38,1001 +chrX 1175870 . T . . END=1175870 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,938 +chrX 1175871 . T . . END=1175885 GT:DP:GQ:MIN_DP:PL 0/0:46:68:46:0,68,1268 +chrX 1175886 . T . . END=1175886 GT:DP:GQ:MIN_DP:PL 0/0:48:15:48:0,15,1280 +chrX 1175887 . T . . END=1175891 GT:DP:GQ:MIN_DP:PL 0/0:49:43:49:0,43,1334 +chrX 1175892 . T . . END=1175892 GT:DP:GQ:MIN_DP:PL 0/0:49:8:49:0,8,1264 +chrX 1175893 . A . . END=1175893 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,99,1485 +chrX 1175894 . T . . END=1175900 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,281 +chrX 1175901 . A . . END=1175904 GT:DP:GQ:MIN_DP:PL 0/0:51:83:51:0,83,1492 +chrX 1175905 . T . . END=1175905 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,1190 +chrX 1175906 . A . . END=1175908 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,117,1755 +chrX 1175909 . T . . END=1175909 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,0 +chrX 1175910 . T . . END=1175917 GT:DP:GQ:MIN_DP:PL 0/0:49:40:49:0,40,1305 +chrX 1175918 . A . . END=1175918 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,516 +chrX 1175919 . A . . END=1175923 GT:DP:GQ:MIN_DP:PL 0/0:49:90:49:0,90,1350 +chrX 1175924 . A . . END=1175924 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,770 +chrX 1175925 . T . . END=1175938 GT:DP:GQ:MIN_DP:PL 0/0:48:33:46:0,33,1248 +chrX 1175939 . T . . END=1175939 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,1281 +chrX 1175940 . A . . END=1175942 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,102,1530 +chrX 1175943 . A . . END=1175943 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,0 +chrX 1175944 . T . . END=1175950 GT:DP:GQ:MIN_DP:PL 0/0:47:43:47:0,43,1424 +chrX 1175951 . T . . END=1175951 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,804 +chrX 1175952 . T . . END=1175963 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,99,1485 +chrX 1175964 . A . . END=1175964 GT:DP:GQ:MIN_DP:PL 0/0:53:0:53:0,0,1335 +chrX 1175965 . T . . END=1175966 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 1175967 . T . . END=1175968 GT:DP:GQ:MIN_DP:PL 0/0:54:0:54:0,0,1285 +chrX 1175969 . A . . END=1175970 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 1175971 . T . . END=1175975 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,828 +chrX 1175976 . A . . END=1175977 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 1175978 . A . . END=1175980 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,838 +chrX 1175981 . A . . END=1175981 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 1175982 . T . . END=1175988 GT:DP:GQ:MIN_DP:PL 0/0:50:0:50:0,0,502 +chrX 1175989 . A . . END=1175990 GT:DP:GQ:MIN_DP:PL 0/0:53:20:53:0,20,1484 +chrX 1175991 . A . . END=1175992 GT:DP:GQ:MIN_DP:PL 0/0:51:8:51:0,8,1375 +chrX 1175993 . T . . END=1175993 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 1175994 . A . . END=1175996 GT:DP:GQ:MIN_DP:PL 0/0:52:0:52:0,0,1120 +chrX 1175997 . A . . END=1176005 GT:DP:GQ:MIN_DP:PL 0/0:48:60:48:0,60,1379 +chrX 1176006 . T . . END=1176006 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,1197 +chrX 1176007 . T . . END=1176009 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,105,1374 +chrX 1176010 . A . . END=1176010 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,1152 +chrX 1176011 . A . . END=1176012 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,108,1620 +chrX 1176013 . G . . END=1176015 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,0 +chrX 1176016 . A . . END=1176016 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,105,1575 +chrX 1176017 . T . . END=1176021 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,0 +chrX 1176022 . T . . END=1176096 GT:DP:GQ:MIN_DP:PL 0/0:41:39:40:0,39,926 +chrX 1176097 . G . . END=1176097 GT:DP:GQ:MIN_DP:PL 0/0:31:19:31:0,19,799 +chrX 1176098 . T . . END=1176206 GT:DP:GQ:MIN_DP:PL 0/0:42:88:42:0,88,1049 +chrX 1176207 . ATATAT A, 1978.03 . AS_QUALapprox=|1992|0;AS_VarDP=3|46|0;BaseQRankSum=-1.008;DP=51;MQRankSum=0.000;QUALapprox=1992;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;ReadPosRankSum=1.263;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:3,46,0:49:99:0|1:1176207_ATATAT_A:1992,106,0,1997,138,2030:1176207:3,0,24,22 +chrX 1176213 . T . . END=1176242 GT:DP:GQ:MIN_DP:PL 0/0:46:33:44:0,33,1100 +chrX 1176243 . T TTTA, 2146.03 . AS_QUALapprox=|2160|0;AS_VarDP=0|48|0;DP=49;QUALapprox=2160;RAW_GT_COUNT=0,0,1;RAW_MQandDP=174169,49;VarDP=48 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,48,0:48:99:0|1:1176207_ATATAT_A:2160,144,0,2160,144,2160:1176207:0,0,25,23 +chrX 1176244 . T . . END=1176266 GT:DP:GQ:MIN_DP:PL 0/0:44:23:44:0,23,1105 +chrX 1176267 . A T, 854.64 . AS_QUALapprox=|862|0;AS_VarDP=18|23|0;BaseQRankSum=-2.313;DP=43;MQRankSum=1.180;QUALapprox=862;RAW_GT_COUNT=0,1,0;RAW_MQandDP=152569,43;ReadPosRankSum=1.685;VarDP=41 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:18,23,0:41:99:0|1:1176207_ATATAT_A:862,0,687,917,756,1672:1176207:7,11,13,10 +chrX 1176268 . A . . END=1176271 GT:DP:GQ:MIN_DP:PL 0/0:41:88:41:0,88,1204 +chrX 1176272 . A G, 854.64 . AS_QUALapprox=|862|0;AS_VarDP=18|23|0;BaseQRankSum=-3.829;DP=41;MQRankSum=1.180;QUALapprox=862;RAW_GT_COUNT=0,1,0;RAW_MQandDP=145369,41;ReadPosRankSum=1.293;VarDP=41 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:18,23,0:41:99:0|1:1176207_ATATAT_A:862,0,687,917,756,1672:1176207:7,11,13,10 +chrX 1176273 . A . . END=1176273 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,102,1530 +chrX 1176274 . T A, 833.64 . AS_QUALapprox=|841|0;AS_VarDP=18|22|0;BaseQRankSum=-0.972;DP=40;MQRankSum=1.156;QUALapprox=841;RAW_GT_COUNT=0,1,0;RAW_MQandDP=141769,40;ReadPosRankSum=1.116;VarDP=40 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:18,22,0:40:99:0|1:1176207_ATATAT_A:841,0,690,895,756,1651:1176207:7,11,12,10 +chrX 1176275 . A . . END=1176287 GT:DP:GQ:MIN_DP:PL 0/0:38:41:38:0,41,1066 +chrX 1176288 . T TATA,TATAAGAAAATAATAAAATATTATA, 1549.02 . AS_QUALapprox=|1080|878|0;AS_VarDP=0|18|11|0;DP=46;QUALapprox=1566;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;VarDP=29 GT:AD:DP:GQ:PL:SB 1/2:0,18,11,0:29:99:1566,486,657,751,0,688,1420,621,767,1509:0,0,14,15 +chrX 1176289 . A . . END=1176307 GT:DP:GQ:MIN_DP:PL 0/0:43:27:37:0,27,976 +chrX 1176308 . T . . END=1176308 GT:DP:GQ:MIN_DP:PL 0/0:38:9:38:0,9,991 +chrX 1176309 . T . . END=1176318 GT:DP:GQ:MIN_DP:PL 0/0:37:42:37:0,42,983 +chrX 1176319 . T . . END=1176319 GT:DP:GQ:MIN_DP:PL 0/0:36:9:36:0,9,933 +chrX 1176320 . A . . END=1176328 GT:DP:GQ:MIN_DP:PL 0/0:36:32:34:0,32,932 +chrX 1176329 . A ATATTATAAAATAATAATAATATATTAT,ATATTATAAAATAATAATAATATATTATTATTATAAAATAATAATAATATATTAT, 1084.02 . AS_QUALapprox=|953|858|0;AS_VarDP=0|6|6|0;DP=52;QUALapprox=1101;RAW_GT_COUNT=0,0,1;RAW_MQandDP=182083,52;VarDP=12 GT:AD:DP:GQ:PL:SB 1/2:0,6,6,0:12:99:1101,213,148,299,0,243,812,217,303,768:0,0,5,7 +chrX 1176330 . T . . END=1176398 GT:DP:GQ:MIN_DP:PL 0/0:64:25:63:0,25,1660 +chrX 1176399 . T . . END=1176400 GT:DP:GQ:MIN_DP:PL 0/0:50:0:50:0,0,757 +chrX 1176401 . A . . END=1176401 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 1176402 . T . . END=1176404 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,689 +chrX 1176405 . T . . END=1176406 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1176407 . A . . END=1176416 GT:DP:GQ:MIN_DP:PL 0/0:52:0:52:0,0,585 +chrX 1176417 . A . . END=1176420 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1176421 . C . . END=1176422 GT:DP:GQ:MIN_DP:PL 0/0:56:0:56:0,0,1087 +chrX 1176423 . A . . END=1176423 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1176424 . C . . END=1176436 GT:DP:GQ:MIN_DP:PL 0/0:56:0:56:0,0,1026 +chrX 1176437 . T . . END=1176437 GT:DP:GQ:MIN_DP:PL 0/0:59:38:59:0,38,1662 +chrX 1176438 . A . . END=1176438 GT:DP:GQ:MIN_DP:PL 0/0:59:0:59:0,0,1484 +chrX 1176439 . A . . END=1176439 GT:DP:GQ:MIN_DP:PL 0/0:61:44:61:0,44,1732 +chrX 1176440 . A . . END=1176440 GT:DP:GQ:MIN_DP:PL 0/0:58:0:58:0,0,1559 +chrX 1176441 . T . . END=1176441 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,118,1831 +chrX 1176442 . T . . END=1176443 GT:DP:GQ:MIN_DP:PL 0/0:57:0:57:0,0,1455 +chrX 1176444 . C . . END=1176702 GT:DP:GQ:MIN_DP:PL 0/0:57:26:55:0,26,1543 +chrX 1176703 . G C, 747.64 . AS_QUALapprox=|755|0;AS_VarDP=33|31|0;BaseQRankSum=-0.497;DP=69;MQRankSum=0.000;QUALapprox=755;RAW_GT_COUNT=0,1,0;RAW_MQandDP=246916,69;ReadPosRankSum=1.109;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:33,31,0:64:99:755,0,851,854,943,1797:14,19,12,19 +chrX 1176704 . G . . END=1176928 GT:DP:GQ:MIN_DP:PL 0/0:50:85:50:0,85,1230 +chrX 1176929 . C T, 529.64 . AS_QUALapprox=|537|0;AS_VarDP=23|21|0;BaseQRankSum=0.324;DP=45;MQRankSum=-1.060;QUALapprox=537;RAW_GT_COUNT=0,1,0;RAW_MQandDP=156002,45;ReadPosRankSum=-1.152;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:23,21,0:44:99:537,0,603,606,666,1271:14,9,9,12 +chrX 1176930 . G . . END=1176949 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,120,1800 +chrX 1176950 . A G, 552.64 . AS_QUALapprox=|560|0;AS_VarDP=25|22|0;BaseQRankSum=0.972;DP=48;MQRankSum=-0.022;QUALapprox=560;RAW_GT_COUNT=0,1,0;RAW_MQandDP=166802,48;ReadPosRankSum=0.053;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:25,22,0:47:99:560,0,608,634,674,1308:14,11,9,13 +chrX 1176951 . G . . END=1176964 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,109,1269 +chrX 1176965 . A G, 1345.06 . AS_QUALapprox=|1359|0;AS_VarDP=0|43|0;DP=43;QUALapprox=1359;RAW_GT_COUNT=0,0,1;RAW_MQandDP=148802,43;VarDP=43 GT:AD:DP:GQ:PL:SB 1/1:0,43,0:43:99:1359,129,0,1359,129,1359:0,0,19,24 +chrX 1176966 . T . . END=1177508 GT:DP:GQ:MIN_DP:PL 0/0:49:63:49:0,63,1165 +chrX 1177509 . AT A, 747.60 . AS_QUALapprox=|755|0;AS_VarDP=27|21|0;BaseQRankSum=-0.679;DP=49;MQRankSum=0.000;QUALapprox=755;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=-2.547;VarDP=48 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,21,0:48:99:0|1:1177509_AT_A:755,0,1017,836,1080,1916:1177509:15,12,10,11 +chrX 1177511 . T . . END=1177536 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,117,1755 +chrX 1177537 . TATA T, 843.60 . AS_QUALapprox=|851|0;AS_VarDP=26|23|0;BaseQRankSum=1.013;DP=49;MQRankSum=0.000;QUALapprox=851;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=-2.448;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,23,0:49:99:0|1:1177509_AT_A:851,0,1000,930,1069,1998:1177509:16,10,12,11 +chrX 1177541 . A . . END=1177564 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,117,1755 +chrX 1177565 . A C, 458.64 . AS_QUALapprox=|466|0;AS_VarDP=25|21|0;BaseQRankSum=-2.236;DP=49;MQRankSum=0.000;QUALapprox=466;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=0.129;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:25,21,0:46:99:466,0,979,541,1040,1581:15,10,13,8 +chrX 1177566 . A . . END=1177596 GT:DP:GQ:MIN_DP:PL 0/0:44:91:44:0,91,1113 +chrX 1177597 . C T, 652.64 . AS_QUALapprox=|660|0;AS_VarDP=18|25|0;BaseQRankSum=1.180;DP=44;MQRankSum=0.000;QUALapprox=660;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=1.628;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:18,25,0:43:99:660,0,592,714,666,1380:11,7,16,9 +chrX 1177598 . T . . END=1177667 GT:DP:GQ:MIN_DP:PL 0/0:50:49:50:0,49,1259 +chrX 1177668 . T . . END=1177668 GT:DP:GQ:MIN_DP:PL 0/0:54:0:54:0,0,1400 +chrX 1177669 . A . . END=1177711 GT:DP:GQ:MIN_DP:PL 0/0:55:51:55:0,51,1318 +chrX 1177712 . G A, 796.06 . AS_QUALapprox=|810|0;AS_VarDP=0|23|0;DP=25;QUALapprox=810;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=23 GT:AD:DP:GQ:PL:SB 1/1:0,23,0:23:68:810,68,0,810,68,810:0,0,12,11 +chrX 1177713 . T . . END=1177752 GT:DP:GQ:MIN_DP:PL 0/0:54:63:54:0,63,709 +chrX 1177753 . A ATATTATATATCATAATTATATTATATTATTATAATATGTAT, 913.60 . AS_QUALapprox=|921|0;AS_VarDP=22|36|0;BaseQRankSum=0.368;DP=63;MQRankSum=0.000;QUALapprox=921;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=-1.631;VarDP=58 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,36,0:58:99:0|1:1177753_A_ATATTATATATCATAATTATATTATATTATTATAATATGTAT:921,0,829,987,915,1902:1177753:9,13,16,20 +chrX 1177754 . T . . END=1177792 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,105,1129 +chrX 1177793 . AATATG A, 1032.60 . AS_QUALapprox=|1040|0;AS_VarDP=27|27|0;BaseQRankSum=0.774;DP=58;MQRankSum=0.000;QUALapprox=1040;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-0.588;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,27,0:54:99:0|1:1177753_A_ATATTATATATCATAATTATATTATATTATTATAATATGTAT:1040,0,1040,1122,1121,2243:1177753:11,16,17,10 +chrX 1177798 . G A,*, 696.04 . AS_QUALapprox=|779|0|0;AS_VarDP=0|25|27|0;DP=58;QUALapprox=1819;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=52 GT:AD:DP:GQ:PL:SB 1/2:0,25,27,0:52:99:1819,1122,1040,706,0,1040,1851,1129,958,2054:0,0,28,24 +chrX 1177799 . T . . END=1177801 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1177802 . C . . END=1177802 GT:DP:GQ:MIN_DP:PL 0/0:59:0:59:0,0,1352 +chrX 1177803 . A . . END=1178010 GT:DP:GQ:MIN_DP:PL 0/0:43:28:39:0,28,986 +chrX 1178011 . C T, 376.64 . AS_QUALapprox=|384|0;AS_VarDP=24|15|0;BaseQRankSum=0.926;DP=42;MQRankSum=-0.340;QUALapprox=384;RAW_GT_COUNT=0,1,0;RAW_MQandDP=149274,42;ReadPosRankSum=0.491;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:24,15,0:39:99:384,0,642,456,687,1143:8,16,5,10 +chrX 1178012 . A . . END=1178130 GT:DP:GQ:MIN_DP:PL 0/0:41:66:41:0,66,804 +chrX 1178131 . A . . END=1178155 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,172 +chrX 1178156 . T . . END=1178157 GT:DP:GQ:MIN_DP:PL 0/0:30:43:30:0,43,485 +chrX 1178158 . A *,T, 230.60 . AS_QUALapprox=|0|1209|0;AS_VarDP=0|0|5|0;DP=29;QUALapprox=1209;RAW_GT_COUNT=0,0,1;RAW_MQandDP=80981,29;VarDP=5 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 2|2:0,0,5,0:5:9:0|1:1178158_A_*:1209,255,188,87,9,0,774,257,86,705:1178158:0,0,2,3 +chrX 1178159 . A . . END=1178181 GT:DP:GQ:MIN_DP:PL 0/0:29:0:29:0,0,0 +chrX 1178182 . TATAAA T, 280.92 . AS_QUALapprox=|1211|0;AS_VarDP=0|29|0;DP=31;QUALapprox=1211;RAW_GT_COUNT=0,0,1;RAW_MQandDP=88181,31;VarDP=29 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,29,0:29:88:0|1:1178158_A_*:1211,88,0,782,92,751:1178158:0,0,2,3 +chrX 1178188 . A . . END=1178193 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,0 +chrX 1178194 . TTATATTATATTATTGTATATGA T, 324.05 . AS_QUALapprox=|660|0;AS_VarDP=0|20|0;DP=43;QUALapprox=660;RAW_GT_COUNT=0,0,1;RAW_MQandDP=125895,43;VarDP=20 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,20,0:20:61:0|1:1178158_A_*:660,61,0,535,120,825:1178158:0,0,2,3 +chrX 1178217 . T . . END=1178265 GT:DP:GQ:MIN_DP:PL 0/0:37:28:34:0,28,883 +chrX 1178266 . G . . END=1178266 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,740 +chrX 1178267 . T . . END=1178271 GT:DP:GQ:MIN_DP:PL 0/0:42:57:42:0,57,1200 +chrX 1178272 . A . . END=1178273 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,854 +chrX 1178274 . T . . END=1178293 GT:DP:GQ:MIN_DP:PL 0/0:43:90:43:0,90,1244 +chrX 1178294 . A . . END=1178299 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,739 +chrX 1178300 . T . . END=1178307 GT:DP:GQ:MIN_DP:PL 0/0:37:45:37:0,45,1099 +chrX 1178308 . A . . END=1178308 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,689 +chrX 1178309 . T . . END=1178325 GT:DP:GQ:MIN_DP:PL 0/0:35:72:35:0,72,1080 +chrX 1178326 . A . . END=1178329 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,495 +chrX 1178330 . A . . END=1178333 GT:DP:GQ:MIN_DP:PL 0/0:35:32:34:0,32,942 +chrX 1178334 . A . . END=1178334 GT:DP:GQ:MIN_DP:PL 0/0:35:11:35:0,11,978 +chrX 1178335 . T . . END=1178335 GT:DP:GQ:MIN_DP:PL 0/0:34:32:34:0,32,962 +chrX 1178336 . A . . END=1178336 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,738 +chrX 1178337 . A . . END=1178337 GT:DP:GQ:MIN_DP:PL 0/0:33:84:33:0,84,1260 +chrX 1178338 . T . . END=1178338 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,793 +chrX 1178339 . T . . END=1178400 GT:DP:GQ:MIN_DP:PL 0/0:30:20:26:0,20,704 +chrX 1178401 . T . . END=1178401 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,356 +chrX 1178402 . T . . END=1178402 GT:DP:GQ:MIN_DP:PL 0/0:28:66:28:0,66,990 +chrX 1178403 . A . . END=1178404 GT:DP:GQ:MIN_DP:PL 0/0:27:0:27:0,0,516 +chrX 1178405 . T . . END=1178418 GT:DP:GQ:MIN_DP:PL 0/0:28:35:27:0,35,754 +chrX 1178419 . T . . END=1178419 GT:DP:GQ:MIN_DP:PL 0/0:30:16:30:0,16,824 +chrX 1178420 . T . . END=1178436 GT:DP:GQ:MIN_DP:PL 0/0:30:55:30:0,55,893 +chrX 1178437 . A . . END=1178437 GT:DP:GQ:MIN_DP:PL 0/0:29:18:29:0,18,799 +chrX 1178438 . T . . END=1178439 GT:DP:GQ:MIN_DP:PL 0/0:31:21:30:0,21,765 +chrX 1178440 . A . . END=1178440 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,0 +chrX 1178441 . A . . END=1178476 GT:DP:GQ:MIN_DP:PL 0/0:33:25:29:0,25,804 +chrX 1178477 . A . . END=1178477 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,10 +chrX 1178478 . T . . END=1179122 GT:DP:GQ:MIN_DP:PL 0/0:34:29:33:0,29,937 +chrX 1179123 . A AT, 1461.03 . AS_QUALapprox=|1475|0;AS_VarDP=0|53|0;DP=62;QUALapprox=1475;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1475,159,0,1475,159,1475:0,0,28,25 +chrX 1179124 . T . . END=1179301 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,110,1539 +chrX 1179302 . T C, 729.64 . AS_QUALapprox=|737|0;AS_VarDP=9|28|0;BaseQRankSum=0.448;DP=37;MQRankSum=1.682;QUALapprox=737;RAW_GT_COUNT=0,1,0;RAW_MQandDP=121777,37;ReadPosRankSum=1.277;VarDP=37 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:9,28,0:37:99:0|1:1179302_T_C:737,0,254,764,337,1101:1179302:6,3,13,15 +chrX 1179303 . C . . END=1179303 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +chrX 1179304 . C T, 1129.64 . AS_QUALapprox=|1137|0;AS_VarDP=7|30|0;BaseQRankSum=-0.120;DP=37;MQRankSum=2.205;QUALapprox=1137;RAW_GT_COUNT=0,1,0;RAW_MQandDP=121777,37;ReadPosRankSum=1.781;VarDP=37 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:7,30,0:37:89:0|1:1179302_T_C:1137,0,89,1157,178,1336:1179302:5,2,14,16 +chrX 1179305 . A . . END=1179492 GT:DP:GQ:MIN_DP:PL 0/0:55:38:55:0,38,1530 +chrX 1179493 . A AT, 593.60 . AS_QUALapprox=|601|0;AS_VarDP=23|27|0;BaseQRankSum=0.295;DP=60;MQRankSum=1.576;QUALapprox=601;RAW_GT_COUNT=0,1,0;RAW_MQandDP=204446,60;ReadPosRankSum=0.448;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:23,27,0:50:99:601,0,471,669,552,1221:10,13,13,14 +chrX 1179494 . T . . END=1179813 GT:DP:GQ:MIN_DP:PL 0/0:52:91:52:0,91,1337 +chrX 1179814 . A G, 1389.06 . AS_QUALapprox=|1403|0;AS_VarDP=0|44|0;DP=47;QUALapprox=1403;RAW_GT_COUNT=0,0,1;RAW_MQandDP=166001,47;VarDP=44 GT:AD:DP:GQ:PL:SB 1/1:0,44,0:44:99:1403,132,0,1403,132,1403:0,0,25,19 +chrX 1179815 . G . . END=1179949 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,117,1755 +chrX 1179950 . G A, 1550.06 . AS_QUALapprox=|1564|0;AS_VarDP=2|49|0;BaseQRankSum=3.347;DP=54;MQRankSum=-0.297;QUALapprox=1564;RAW_GT_COUNT=0,0,1;RAW_MQandDP=186762,54;ReadPosRankSum=-0.874;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:2,49,0:51:99:1564,132,0,1569,146,1583:2,0,19,30 +chrX 1179951 . T . . END=1180082 GT:DP:GQ:MIN_DP:PL 0/0:40:49:40:0,49,923 +chrX 1180083 . G A, 1912.06 . AS_QUALapprox=|1926|0;AS_VarDP=1|52|0;BaseQRankSum=2.734;DP=55;MQRankSum=3.029;QUALapprox=1926;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194073,55;ReadPosRankSum=-0.556;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:1,52,0:53:99:0|1:1180083_G_A:1926,149,0,1928,156,1935:1180083:0,1,17,35 +chrX 1180084 . G . . END=1180103 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 1180104 . G C, 561.64 . AS_QUALapprox=|569|0;AS_VarDP=29|22|0;BaseQRankSum=1.780;DP=52;MQRankSum=-0.326;QUALapprox=569;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183624,52;ReadPosRankSum=-0.067;VarDP=51 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,22,0:51:99:0|1:1180083_G_A:569,0,691,654,756,1410:1180083:12,17,6,16 +chrX 1180105 . T . . END=1180734 GT:DP:GQ:MIN_DP:PL 0/0:57:96:57:0,96,1487 +chrX 1180735 . G A, 745.64 . AS_QUALapprox=|753|0;AS_VarDP=33|29|0;BaseQRankSum=2.562;DP=64;MQRankSum=1.669;QUALapprox=753;RAW_GT_COUNT=0,1,0;RAW_MQandDP=227518,64;ReadPosRankSum=0.191;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:33,29,0:62:99:753,0,735,850,822,1673:19,14,14,15 +chrX 1180736 . G . . END=1180858 GT:DP:GQ:MIN_DP:PL 0/0:56:78:56:0,78,1324 +chrX 1180859 . C G, 410.64 . AS_QUALapprox=|418|0;AS_VarDP=26|18|0;BaseQRankSum=-1.683;DP=44;MQRankSum=-1.156;QUALapprox=418;RAW_GT_COUNT=0,1,0;RAW_MQandDP=157300,44;ReadPosRankSum=0.203;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:26,18,0:44:99:418,0,966,497,1019,1516:16,10,9,9 +chrX 1180860 . T . . END=1180872 GT:DP:GQ:MIN_DP:PL 0/0:44:93:44:0,93,1306 +chrX 1180873 . CA C, 221.60 . AS_QUALapprox=|229|0;AS_VarDP=28|14|0;BaseQRankSum=-3.127;DP=55;MQRankSum=-0.470;QUALapprox=229;RAW_GT_COUNT=0,1,0;RAW_MQandDP=192801,55;ReadPosRankSum=0.059;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:28,14,0:42:99:229,0,905,313,947,1260:19,9,9,5 +chrX 1180875 . A . . END=1180876 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,111,1665 +chrX 1180877 . A C, 762.64 . AS_QUALapprox=|770|0;AS_VarDP=24|27|0;BaseQRankSum=2.280;DP=53;MQRankSum=2.206;QUALapprox=770;RAW_GT_COUNT=0,1,0;RAW_MQandDP=185601,53;ReadPosRankSum=0.370;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:24,27,0:51:99:770,0,774,842,855,1697:13,11,18,9 +chrX 1180878 . A . . END=1181047 GT:DP:GQ:MIN_DP:PL 0/0:61:74:61:0,74,1452 +chrX 1181048 . G C, 2036.06 . AS_QUALapprox=|2050|0;AS_VarDP=0|61|0;DP=62;QUALapprox=2050;RAW_GT_COUNT=0,0,1;RAW_MQandDP=222736,62;VarDP=61 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:2050,183,0,2050,183,2050:0,0,38,23 +chrX 1181049 . G . . END=1181116 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1181117 . G A, 815.64 . AS_QUALapprox=|823|0;AS_VarDP=37|23|0;BaseQRankSum=0.207;DP=60;MQRankSum=0.000;QUALapprox=823;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=1.757;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:37,23,0:60:99:0|1:1181117_G_A:823,0,1382,935,1451,2386:1181117:18,19,19,4 +chrX 1181118 . A . . END=1181131 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1181132 . C A, 781.64 . AS_QUALapprox=|789|0;AS_VarDP=38|22|0;BaseQRankSum=-0.082;DP=61;MQRankSum=0.000;QUALapprox=789;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=2.092;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:38,22,0:60:99:0|1:1181117_G_A:789,0,1417,903,1484,2387:1181117:16,22,17,5 +chrX 1181133 . A . . END=1181344 GT:DP:GQ:MIN_DP:PL 0/0:77:99:77:0,120,1800 +chrX 1181345 . A G, 2722.06 . AS_QUALapprox=|2736|0;AS_VarDP=0|86|0;DP=90;QUALapprox=2736;RAW_GT_COUNT=0,0,1;RAW_MQandDP=323425,90;VarDP=86 GT:AD:DP:GQ:PL:SB 1/1:0,86,0:86:99:2736,258,0,2736,258,2736:0,0,40,46 +chrX 1181346 . G . . END=1181511 GT:DP:GQ:MIN_DP:PL 0/0:84:99:84:0,120,1800 +chrX 1181512 . T C, 1945.06 . AS_QUALapprox=|1959|0;AS_VarDP=0|62|0;DP=64;QUALapprox=1959;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:0,62,0:62:99:1959,186,0,1959,186,1959:0,0,32,30 +chrX 1181513 . G . . END=1181621 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1181622 . G T, 681.64 . AS_QUALapprox=|689|0;AS_VarDP=32|26|0;BaseQRankSum=1.158;DP=59;MQRankSum=0.000;QUALapprox=689;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-0.837;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:32,26,0:58:99:689,0,848,785,926,1711:21,11,11,15 +chrX 1181623 . A . . END=1181763 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,116,1712 +chrX 1181764 . G A, 864.64 . AS_QUALapprox=|872|0;AS_VarDP=31|31|0;BaseQRankSum=3.035;DP=64;MQRankSum=0.000;QUALapprox=872;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=0.176;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:31,31,0:62:99:872,0,756,964,849,1814:12,19,14,17 +chrX 1181765 . T . . END=1181793 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 1181794 . G C, 753.64 . AS_QUALapprox=|761|0;AS_VarDP=39|28|0;BaseQRankSum=2.942;DP=71;MQRankSum=0.000;QUALapprox=761;RAW_GT_COUNT=0,1,0;RAW_MQandDP=255600,71;ReadPosRankSum=-0.909;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:39,28,0:67:99:761,0,1024,879,1108,1987:20,19,13,15 +chrX 1181795 . T . . END=1181870 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1181871 . G C, 825.64 . AS_QUALapprox=|833|0;AS_VarDP=33|30|0;BaseQRankSum=1.646;DP=66;MQRankSum=0.000;QUALapprox=833;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=0.344;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:33,30,0:63:99:833,0,887,933,977,1910:19,14,18,12 +chrX 1181872 . A . . END=1181949 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1181950 . A G, 682.64 . AS_QUALapprox=|690|0;AS_VarDP=28|28|0;BaseQRankSum=-0.922;DP=58;MQRankSum=0.000;QUALapprox=690;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-0.689;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:28,28,0:56:99:690,0,735,774,819,1593:17,11,17,11 +chrX 1181951 . G . . END=1182130 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 1182131 . A G, 697.64 . AS_QUALapprox=|705|0;AS_VarDP=30|26|0;BaseQRankSum=0.556;DP=57;MQRankSum=0.000;QUALapprox=705;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-0.222;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:30,26,0:56:99:705,0,824,795,903,1698:13,17,13,13 +chrX 1182132 . T . . END=1182192 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,110,1366 +chrX 1182193 . AAAAATAAAATAAAATAAAAT A,AAAAAT, 643.02 . AS_QUALapprox=|267|439|0;AS_VarDP=0|6|10|0;DP=45;QUALapprox=660;RAW_GT_COUNT=0,0,1;RAW_MQandDP=157387,45;VarDP=16 GT:AD:DP:GQ:PL:SB 1/2:0,6,10,0:16:99:660,410,393,254,0,221,662,416,253,666:0,0,9,7 +chrX 1182214 . A . . END=1182272 GT:DP:GQ:MIN_DP:PL 0/0:23:30:22:0,30,620 +chrX 1182273 . AATAAAAATAAAATAAAATAAAATAAG A, 400.60 . AS_QUALapprox=|408|0;AS_VarDP=18|11|0;BaseQRankSum=1.583;DP=30;MQRankSum=-1.208;QUALapprox=408;RAW_GT_COUNT=0,1,0;RAW_MQandDP=105138,30;ReadPosRankSum=-0.586;VarDP=29 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:18,11,0:29:99:0|1:1182273_AATAAAAATAAAATAAAATAAAATAAG_A:408,0,723,462,756,1218:1182273:13,5,6,5 +chrX 1182300 . A . . END=1182315 GT:DP:GQ:MIN_DP:PL 0/0:26:40:26:0,40,739 +chrX 1182316 . TAAAATAAATAAAATA T, 484.60 . AS_QUALapprox=|492|0;AS_VarDP=22|14|0;BaseQRankSum=1.664;DP=37;MQRankSum=-1.197;QUALapprox=492;RAW_GT_COUNT=0,1,0;RAW_MQandDP=130338,37;ReadPosRankSum=-1.371;VarDP=36 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,14,0:36:99:0|1:1182273_AATAAAAATAAAATAAAATAAAATAAG_A:492,0,857,558,900,1458:1182273:17,5,8,6 +chrX 1182332 . A . . END=1182843 GT:DP:GQ:MIN_DP:PL 0/0:62:46:62:0,46,1047 +chrX 1182844 . T C, 1627.06 . AS_QUALapprox=|1641|0;AS_VarDP=0|52|0;DP=55;QUALapprox=1641;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1641,156,0,1641,156,1641:0,0,23,29 +chrX 1182845 . G . . END=1182918 GT:DP:GQ:MIN_DP:PL 0/0:57:86:57:0,86,1497 +chrX 1182919 . C CAA, 603.60 . AS_QUALapprox=|611|0;AS_VarDP=20|23|0;BaseQRankSum=-1.162;DP=52;MQRankSum=-1.301;QUALapprox=611;RAW_GT_COUNT=0,1,0;RAW_MQandDP=184736,52;ReadPosRankSum=-0.731;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:20,23,0:43:99:611,0,561,671,631,1302:10,10,13,10 +chrX 1182920 . A . . END=1182990 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,118,1643 +chrX 1182991 . G C, 1557.64 . AS_QUALapprox=|1565|0;AS_VarDP=13|40|0;BaseQRankSum=-0.029;DP=55;MQRankSum=0.000;QUALapprox=1565;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-1.089;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:13,40,0:53:99:0|1:1182991_G_C:1565,0,416,1604,536,2139:1182991:7,6,24,16 +chrX 1182992 . C . . END=1183010 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 1183011 . C T, 1575.64 . AS_QUALapprox=|1583|0;AS_VarDP=15|40|0;BaseQRankSum=-1.085;DP=57;MQRankSum=0.000;QUALapprox=1583;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=0.533;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:15,40,0:55:99:0|1:1182991_G_C:1583,0,479,1629,599,2228:1182991:9,6,21,19 +chrX 1183012 . G . . END=1183077 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 1183078 . A G, 1797.06 . AS_QUALapprox=|1811|0;AS_VarDP=0|57|0;DP=60;QUALapprox=1811;RAW_GT_COUNT=0,0,1;RAW_MQandDP=211361,60;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1811,171,0,1811,171,1811:0,0,30,27 +chrX 1183079 . G . . END=1183461 GT:DP:GQ:MIN_DP:PL 0/0:42:21:39:0,21,1125 +chrX 1183462 . C T, 19.64 . AS_QUALapprox=|27|0;AS_VarDP=33|3|0;BaseQRankSum=-0.110;DP=36;MQRankSum=-0.178;QUALapprox=27;RAW_GT_COUNT=0,1,0;RAW_MQandDP=95031,36;ReadPosRankSum=-1.460;VarDP=36 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:33,3,0:36:27:0|1:1183462_C_T:27,0,1330,126,1339,1465:1183462:17,16,1,2 +chrX 1183463 . T G, 19.64 . AS_QUALapprox=|27|0;AS_VarDP=33|3|0;BaseQRankSum=-0.322;DP=36;MQRankSum=-0.178;QUALapprox=27;RAW_GT_COUNT=0,1,0;RAW_MQandDP=95031,36;ReadPosRankSum=-1.621;VarDP=36 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:33,3,0:36:27:0|1:1183462_C_T:27,0,1330,126,1339,1465:1183462:17,16,1,2 +chrX 1183464 . C . . END=1183465 GT:DP:GQ:MIN_DP:PL 0/0:35:87:35:0,87,1305 +chrX 1183466 . G C,A, 28.64 . AS_QUALapprox=|1|36|0;AS_VarDP=28|2|3|0;BaseQRankSum=-1.123;DP=35;MQRankSum=-0.618;QUALapprox=36;RAW_GT_COUNT=0,1,0;RAW_MQandDP=91431,35;ReadPosRankSum=-1.381;VarDP=33 GT:AD:DP:GQ:PL:SB 0/2:28,2,3,0:33:35:36,35,783,0,743,1216,126,852,1049,1112:15,13,2,3 +chrX 1183467 . T . . END=1183567 GT:DP:GQ:MIN_DP:PL 0/0:13:21:8:0,21,233 +chrX 1183568 . T . . END=1183573 GT:DP:GQ:MIN_DP:PL 0/0:8:15:8:0,15,225 +chrX 1183574 . A G, 209.02 . AS_QUALapprox=|223|0;AS_VarDP=0|7|0;DP=7;QUALapprox=223;RAW_GT_COUNT=0,0,1;RAW_MQandDP=10590,7;VarDP=7 GT:AD:DP:GQ:PL:SB 1/1:0,7,0:7:21:223,21,0,223,21,223:0,0,0,7 +chrX 1183575 . A . . END=1183868 GT:DP:GQ:MIN_DP:PL 0/0:5:0:5:0,0,25 +chrX 1183869 . G . . END=1184040 GT:DP:GQ:MIN_DP:PL 0/0:15:21:8:0,21,233 +chrX 1184041 . T . . END=1184041 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,863 +chrX 1184042 . C . . END=1184044 GT:DP:GQ:MIN_DP:PL 0/0:35:70:35:0,70,1047 +chrX 1184045 . C . . END=1184045 GT:DP:GQ:MIN_DP:PL 0/0:34:18:34:0,18,933 +chrX 1184046 . T . . END=1184070 GT:DP:GQ:MIN_DP:PL 0/0:34:64:34:0,64,1018 +chrX 1184071 . A G, 42.64 . AS_QUALapprox=|50|0;AS_VarDP=33|5|0;BaseQRankSum=-4.247;DP=38;MQRankSum=-0.131;QUALapprox=50;RAW_GT_COUNT=0,1,0;RAW_MQandDP=79399,38;ReadPosRankSum=-1.536;VarDP=38 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:33,5,0:38:50:0|1:1184071_A_G:50,0,1325,149,1340,1489:1184071:21,12,3,2 +chrX 1184072 . T . . END=1184072 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,100,1212 +chrX 1184073 . C G, 42.64 . AS_QUALapprox=|50|0;AS_VarDP=33|5|0;BaseQRankSum=-3.981;DP=38;MQRankSum=-0.131;QUALapprox=50;RAW_GT_COUNT=0,1,0;RAW_MQandDP=79399,38;ReadPosRankSum=-1.901;VarDP=38 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:33,5,0:38:50:0|1:1184071_A_G:50,0,1325,149,1340,1489:1184071:21,12,3,2 +chrX 1184074 . C . . END=1184481 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,99,1286 +chrX 1184482 . G GT, 512.60 . AS_QUALapprox=|520|0;AS_VarDP=14|26|0;BaseQRankSum=-0.570;DP=48;MQRankSum=-0.681;QUALapprox=520;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169136,48;ReadPosRankSum=-0.227;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:14,26,0:40:99:520,0,242,562,320,883:10,4,13,13 +chrX 1184483 . T . . END=1184527 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,114,1345 +chrX 1184528 . G A, 1649.06 . AS_QUALapprox=|1663|0;AS_VarDP=1|50|0;BaseQRankSum=3.038;DP=53;MQRankSum=3.915;QUALapprox=1663;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187017,53;ReadPosRankSum=1.020;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:1,50,0:51:99:1663,143,0,1666,150,1673:1,0,21,29 +chrX 1184529 . A . . END=1184788 GT:DP:GQ:MIN_DP:PL 0/0:51:47:51:0,47,1076 +chrX 1184789 . C CT, 420.03 . AS_QUALapprox=|434|0;AS_VarDP=0|20|0;DP=34;QUALapprox=434;RAW_GT_COUNT=0,0,1;RAW_MQandDP=110223,34;VarDP=20 GT:AD:DP:GQ:PL:SB 1/1:0,20,0:20:59:434,59,0,434,59,434:0,0,14,6 +chrX 1184790 . T . . END=1184805 GT:DP:GQ:MIN_DP:PL 0/0:34:54:34:0,54,810 +chrX 1184806 . G . . END=1184807 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,292 +chrX 1184808 . G . . END=1184808 GT:DP:GQ:MIN_DP:PL 0/0:27:42:27:0,42,699 +chrX 1184809 . A . . END=1184809 GT:DP:GQ:MIN_DP:PL 0/0:26:0:26:0,0,604 +chrX 1184810 . T . . END=1184812 GT:DP:GQ:MIN_DP:PL 0/0:24:31:22:0,31,584 +chrX 1184813 . A . . END=1184813 GT:DP:GQ:MIN_DP:PL 0/0:27:3:27:0,3,621 +chrX 1184814 . G . . END=1185094 GT:DP:GQ:MIN_DP:PL 0/0:36:33:24:0,33,656 +chrX 1185095 . C CTT, 740.03 . AS_QUALapprox=|754|0;AS_VarDP=0|28|0;DP=40;QUALapprox=754;RAW_GT_COUNT=0,0,1;RAW_MQandDP=119881,40;VarDP=28 GT:AD:DP:GQ:PL:SB 1/1:0,28,0:28:84:754,84,0,754,84,755:0,0,18,10 +chrX 1185096 . T . . END=1185116 GT:DP:GQ:MIN_DP:PL 0/0:39:39:38:0,39,585 +chrX 1185117 . G . . END=1185117 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,735 +chrX 1185118 . A . . END=1185136 GT:DP:GQ:MIN_DP:PL 0/0:34:64:34:0,64,804 +chrX 1185137 . C T, 1729.06 . AS_QUALapprox=|1743|0;AS_VarDP=0|39|0;DP=40;QUALapprox=1743;RAW_GT_COUNT=0,0,1;RAW_MQandDP=134035,40;VarDP=39 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,39,0:39:99:0|1:1185137_C_T:1743,117,0,1743,117,1743:1185137:0,0,20,19 +chrX 1185138 . A G, 1729.06 . AS_QUALapprox=|1743|0;AS_VarDP=0|39|0;DP=40;QUALapprox=1743;RAW_GT_COUNT=0,0,1;RAW_MQandDP=134035,40;VarDP=39 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,39,0:39:99:0|1:1185137_C_T:1743,117,0,1743,117,1743:1185137:0,0,20,19 +chrX 1185139 . C . . END=1185300 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,112,1330 +chrX 1185301 . G A, 645.64 . AS_QUALapprox=|653|0;AS_VarDP=40|25|0;BaseQRankSum=2.092;DP=67;MQRankSum=0.000;QUALapprox=653;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=0.115;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:40,25,0:65:99:653,0,1115,774,1190,1964:21,19,15,10 +chrX 1185302 . T . . END=1185633 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 1185634 . A G, 2041.06 . AS_QUALapprox=|2055|0;AS_VarDP=0|62|0;DP=63;QUALapprox=2055;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:0,62,0:62:99:2055,186,0,2055,186,2055:0,0,23,39 +chrX 1185635 . A . . END=1185874 GT:DP:GQ:MIN_DP:PL 0/0:57:97:57:0,97,1279 +chrX 1185875 . G A, 294.64 . AS_QUALapprox=|302|0;AS_VarDP=26|12|0;BaseQRankSum=0.000;DP=39;MQRankSum=0.000;QUALapprox=302;RAW_GT_COUNT=0,1,0;RAW_MQandDP=140400,39;ReadPosRankSum=-0.943;VarDP=38 GT:AD:DP:GQ:PL:SB 0/1:26,12,0:38:99:302,0,787,380,823,1203:19,7,10,2 +chrX 1185876 . G . . END=1186112 GT:DP:GQ:MIN_DP:PL 0/0:49:45:49:0,45,1237 +chrX 1186113 . A T, 2271.06 . AS_QUALapprox=|2285|0;AS_VarDP=0|55|0;DP=57;QUALapprox=2285;RAW_GT_COUNT=0,0,1;RAW_MQandDP=192012,57;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,55,0:55:99:0|1:1186113_A_T:2285,165,0,2285,165,2285:1186113:0,0,25,30 +chrX 1186114 . A . . END=1186137 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 1186138 . T C, 2224.06 . AS_QUALapprox=|2238|0;AS_VarDP=0|54|0;DP=57;QUALapprox=2238;RAW_GT_COUNT=0,0,1;RAW_MQandDP=192012,57;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,54,0:54:99:0|1:1186113_A_T:2238,162,0,2238,162,2238:1186113:0,0,26,28 +chrX 1186139 . T . . END=1187333 GT:DP:GQ:MIN_DP:PL 0/0:53:49:53:0,49,1041 +chrX 1187334 . T C, 1778.06 . AS_QUALapprox=|1792|0;AS_VarDP=0|55|0;DP=59;QUALapprox=1792;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1792,165,0,1792,165,1792:0,0,31,24 +chrX 1187335 . G . . END=1187390 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 1187391 . ATT A, 916.03 . AS_QUALapprox=|930|0;AS_VarDP=3|38|0;BaseQRankSum=-1.373;DP=57;MQRankSum=0.000;QUALapprox=930;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;ReadPosRankSum=0.726;VarDP=41 GT:AD:DP:GQ:PL:SB 1/1:3,38,0:41:43:930,43,0,939,112,1008:3,0,18,20 +chrX 1187394 . T . . END=1187537 GT:DP:GQ:MIN_DP:PL 0/0:60:57:60:0,57,1456 +chrX 1187538 . T C, 1810.06 . AS_QUALapprox=|1824|0;AS_VarDP=0|58|0;DP=58;QUALapprox=1824;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=58 GT:AD:DP:GQ:PL:SB 1/1:0,58,0:58:99:1824,173,0,1824,173,1824:0,0,35,23 +chrX 1187539 . T . . END=1187938 GT:DP:GQ:MIN_DP:PL 0/0:57:71:57:0,71,1201 +chrX 1187939 . C . . END=1187941 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,0 +chrX 1187942 . A . . END=1187948 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,119,1593 +chrX 1187949 . AAAG A, 387.60 . AS_QUALapprox=|395|0;AS_VarDP=20|18|0;BaseQRankSum=1.110;DP=48;MQRankSum=0.000;QUALapprox=395;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=-0.410;VarDP=38 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:20,18,0:38:99:0|1:1187949_AAAG_A:395,0,453,455,507,962:1187949:8,12,13,5 +chrX 1187950 . A G,*, 456.01 . AS_QUALapprox=|1574|0|0;AS_VarDP=0|20|18|0;DP=47;QUALapprox=1969;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;VarDP=38 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|2:0,20,18,0:38:99:1|0:1187949_AAAG_A:1969,535,395,592,0,453,1583,525,581,1466:1187949:0,0,21,17 +chrX 1187953 . AG A, 445.60 . AS_QUALapprox=|453|0;AS_VarDP=18|20|0;BaseQRankSum=-1.142;DP=48;MQRankSum=0.000;QUALapprox=453;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=0.638;VarDP=38 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:18,20,0:38:99:1|0:1187949_AAAG_A:453,0,395,507,455,962:1187949:13,5,8,12 +chrX 1187955 . A . . END=1187955 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,107,1464 +chrX 1187956 . GA G, 420.60 . AS_QUALapprox=|428|0;AS_VarDP=18|19|0;BaseQRankSum=-1.142;DP=50;MQRankSum=0.000;QUALapprox=428;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=0.669;VarDP=37 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:18,19,0:37:99:1|0:1187949_AAAG_A:428,0,398,482,455,937:1187949:13,5,8,11 +chrX 1187957 . A *,AAG, 400.97 . AS_QUALapprox=|0|1548|0;AS_VarDP=0|19|18|0;DP=50;QUALapprox=1976;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=37 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|2:0,19,18,0:37:99:0|1:1187949_AAAG_A:1976,538,398,568,0,428,1576,528,558,1457:1187949:0,0,21,16 +chrX 1187958 . T . . END=1188056 GT:DP:GQ:MIN_DP:PL 0/0:51:86:51:0,86,1459 +chrX 1188057 . C T, 495.64 . AS_QUALapprox=|503|0;AS_VarDP=23|18|0;BaseQRankSum=2.553;DP=42;MQRankSum=0.000;QUALapprox=503;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151200,42;ReadPosRankSum=-0.381;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:23,18,0:41:99:503,0,591,572,645,1217:14,9,13,5 +chrX 1188058 . G . . END=1188299 GT:DP:GQ:MIN_DP:PL 0/0:52:89:52:0,89,1179 +chrX 1188300 . C T, 1688.06 . AS_QUALapprox=|1702|0;AS_VarDP=1|53|0;BaseQRankSum=1.973;DP=57;MQRankSum=-0.098;QUALapprox=1702;RAW_GT_COUNT=0,0,1;RAW_MQandDP=204050,57;ReadPosRankSum=0.931;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:1,53,0:54:99:1702,137,0,1705,159,1727:1,0,21,32 +chrX 1188301 . C . . END=1188831 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,108,1429 +chrX 1188832 . T C, 715.64 . AS_QUALapprox=|723|0;AS_VarDP=22|28|0;BaseQRankSum=-0.664;DP=52;MQRankSum=0.000;QUALapprox=723;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=0.205;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:22,28,0:50:99:723,0,575,790,659,1448:14,8,16,12 +chrX 1188833 . A . . END=1188867 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1188868 . TATATGTATATGCATTTGTATATGTATTTGC T, 197.60 . AS_QUALapprox=|205|0;AS_VarDP=30|10|0;BaseQRankSum=0.219;DP=70;MQRankSum=0.000;QUALapprox=205;RAW_GT_COUNT=0,1,0;RAW_MQandDP=249025,70;ReadPosRankSum=0.818;VarDP=40 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:30,10,0:40:99:0|1:1188868_TATATGTATATGCATTTGTATATGTATTTGC_T:205,0,1135,295,1172,1468:1188868:17,13,5,5 +chrX 1188880 . C *,T, 860.04 . AS_QUALapprox=|0|1422|0;AS_VarDP=0|9|26|0;DP=60;QUALapprox=1694;RAW_GT_COUNT=0,0,1;RAW_MQandDP=213025,60;VarDP=35 GT:AD:DP:GQ:PL:SB 1/2:0,9,26,0:35:99:1694,870,1055,344,0,272,1479,1021,385,1569:0,0,21,14 +chrX 1188899 . A . . END=1188927 GT:DP:GQ:MIN_DP:PL 0/0:66:0:66:0,0,0 +chrX 1188928 . T *,C, 263.64 . AS_QUALapprox=|0|271|0;AS_VarDP=34|0|10|0;BaseQRankSum=0.416;DP=51;MQRankSum=0.000;QUALapprox=271;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=1.163;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|2:34,0,10,0:44:99:0|1:1188868_TATATGTATATGCATTTGTATATGTATTTGC_T:271,321,1832,0,1324,1255,358,1751,1318,1746:1188868:19,15,5,5 +chrX 1188929 . A . . END=1189096 GT:DP:GQ:MIN_DP:PL 0/0:45:68:45:0,68,1106 +chrX 1189097 . CTA C, 562.60 . AS_QUALapprox=|570|0;AS_VarDP=19|17|0;BaseQRankSum=-1.179;DP=42;MQRankSum=-1.851;QUALapprox=570;RAW_GT_COUNT=0,1,0;RAW_MQandDP=146281,42;ReadPosRankSum=0.889;VarDP=36 GT:AD:DP:GQ:PL:SB 0/1:19,17,0:36:99:570,0,630,627,681,1309:4,15,6,11 +chrX 1189100 . T . . END=1189116 GT:DP:GQ:MIN_DP:PL 0/0:38:84:38:0,84,1260 +chrX 1189117 . CCATATATAGTGTG C, 237.60 . AS_QUALapprox=|245|0;AS_VarDP=16|8|0;BaseQRankSum=1.405;DP=38;MQRankSum=2.176;QUALapprox=245;RAW_GT_COUNT=0,1,0;RAW_MQandDP=122722,38;ReadPosRankSum=-0.323;VarDP=24 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:16,8,0:24:99:0|1:1189117_CCATATATAGTGTG_C:245,0,590,293,618,911:1189117:9,7,1,7 +chrX 1189118 . C *,T, 551.01 . AS_QUALapprox=|0|1273|0;AS_VarDP=0|8|15|0;DP=37;QUALapprox=1521;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122281,37;VarDP=23 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 2|1:0,8,15,0:23:99:1|0:1189117_CCATATATAGTGTG_C:1521,624,548,347,0,248,1253,621,343,1195:1189117:0,0,9,14 +chrX 1189130 . G *,A, 593.01 . AS_QUALapprox=|0|1318|0;AS_VarDP=0|8|16|0;DP=38;QUALapprox=1563;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122722,38;VarDP=24 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 2|1:0,8,16,0:24:99:1|0:1189117_CCATATATAGTGTG_C:1563,666,590,347,0,245,1295,663,343,1237:1189117:0,0,10,14 +chrX 1189131 . T . . END=1189137 GT:DP:GQ:MIN_DP:PL 0/0:35:72:35:0,72,1080 +chrX 1189138 . AGTGT A,AGTGTGT, 1418.02 . AS_QUALapprox=|844|1191|0;AS_VarDP=0|8|16|0;DP=34;QUALapprox=1435;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108322,34;VarDP=24 GT:AD:DP:GQ:PL:SB 1/2:0,8,16,0:24:99:1435,655,591,334,0,244,1218,653,330,1172:0,0,10,14 +chrX 1189143 . G . . END=1189159 GT:DP:GQ:MIN_DP:PL 0/0:26:42:26:0,42,630 +chrX 1189160 . G GTA, 543.60 . AS_QUALapprox=|551|0;AS_VarDP=8|14|0;BaseQRankSum=-1.369;DP=25;MQRankSum=-2.048;QUALapprox=551;RAW_GT_COUNT=0,1,0;RAW_MQandDP=76386,25;ReadPosRankSum=2.103;VarDP=22 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:8,14,0:22:99:1|0:1189117_CCATATATAGTGTG_C:551,0,248,576,290,866:1189117:1,7,8,6 +chrX 1189161 . T . . END=1189161 GT:DP:GQ:MIN_DP:PL 0/0:22:42:22:0,42,630 +chrX 1189162 . G A, 508.64 . AS_QUALapprox=|516|0;AS_VarDP=8|13|0;BaseQRankSum=-0.714;DP=23;MQRankSum=-1.895;QUALapprox=516;RAW_GT_COUNT=0,1,0;RAW_MQandDP=70482,23;ReadPosRankSum=2.513;VarDP=21 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:8,13,0:21:99:1|0:1189117_CCATATATAGTGTG_C:516,0,250,540,289,830:1189117:1,7,7,6 +chrX 1189163 . T . . END=1189178 GT:DP:GQ:MIN_DP:PL 0/0:17:33:16:0,33,495 +chrX 1189179 . GTA G, 571.60 . AS_QUALapprox=|579|0;AS_VarDP=3|14|0;BaseQRankSum=-0.320;DP=17;MQRankSum=-1.099;QUALapprox=579;RAW_GT_COUNT=0,1,0;RAW_MQandDP=48882,17;ReadPosRankSum=0.607;VarDP=17 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:3,14,0:17:84:1|0:1189117_CCATATATAGTGTG_C:579,0,84,588,126,714:1189117:0,3,8,6 +chrX 1189182 . T . . END=1189195 GT:DP:GQ:MIN_DP:PL 0/0:17:26:15:0,26,450 +chrX 1189196 . G . . END=1189196 GT:DP:GQ:MIN_DP:PL 0/0:14:17:14:0,17,376 +chrX 1189197 . T . . END=1189204 GT:DP:GQ:MIN_DP:PL 0/0:13:24:12:0,24,360 +chrX 1189205 . T . . END=1189205 GT:DP:GQ:MIN_DP:PL 0/0:11:18:11:0,18,270 +chrX 1189206 . A AGTGTGTGTG, 578.02 . AS_QUALapprox=|585|0;AS_VarDP=1|14|0;DP=16;MQRankSum=-0.657;QUALapprox=585;RAW_GT_COUNT=0,1,0;RAW_MQandDP=42978,16;VarDP=15 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:1,14,0:15:0:1|0:1189117_CCATATATAGTGTG_C:585,0,0,588,42,630:1189117:0,1,8,6 +chrX 1189207 . TA T, 616.03 . AS_QUALapprox=|630|0;AS_VarDP=0|14|0;DP=15;QUALapprox=630;RAW_GT_COUNT=0,0,1;RAW_MQandDP=39378,15;VarDP=14 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,14,0:14:42:1|0:1189117_CCATATATAGTGTG_C:630,42,0,630,42,630:1189117:0,0,8,6 +chrX 1189209 . G . . END=1189219 GT:DP:GQ:MIN_DP:PL 0/0:12:0:12:0,0,243 +chrX 1189220 . T . . END=1189220 GT:DP:GQ:MIN_DP:PL 0/0:12:22:12:0,22,358 +chrX 1189221 . A . . END=1189230 GT:DP:GQ:MIN_DP:PL 0/0:12:0:12:0,0,313 +chrX 1189231 . AG A, 631.02 . AS_QUALapprox=|645|0;AS_VarDP=2|15|0;BaseQRankSum=-0.230;DP=19;MQRankSum=-0.561;QUALapprox=645;RAW_GT_COUNT=0,0,1;RAW_MQandDP=61241,19;ReadPosRankSum=1.937;VarDP=17 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:2,15,0:17:38:1|0:1189117_CCATATATAGTGTG_C:645,38,0,649,46,656:1189117:2,0,11,4 +chrX 1189233 . T TATATATATATATA, 586.02 . AS_QUALapprox=|600|0;AS_VarDP=2|14|0;BaseQRankSum=-0.497;DP=18;MQRankSum=-0.414;QUALapprox=600;RAW_GT_COUNT=0,0,1;RAW_MQandDP=59641,18;ReadPosRankSum=0.721;VarDP=16 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:2,14,0:16:35:1|0:1189117_CCATATATAGTGTG_C:600,35,0,604,43,611:1189117:2,0,10,4 +chrX 1189234 . G . . END=1189246 GT:DP:GQ:MIN_DP:PL 0/0:15:0:15:0,0,382 +chrX 1189247 . T . . END=1189248 GT:DP:GQ:MIN_DP:PL 0/0:20:25:20:0,25,606 +chrX 1189249 . T . . END=1189251 GT:DP:GQ:MIN_DP:PL 0/0:21:0:21:0,0,491 +chrX 1189252 . T . . END=1189253 GT:DP:GQ:MIN_DP:PL 0/0:21:28:21:0,28,620 +chrX 1189254 . T . . END=1189254 GT:DP:GQ:MIN_DP:PL 0/0:21:0:21:0,0,551 +chrX 1189255 . A . . END=1189256 GT:DP:GQ:MIN_DP:PL 0/0:21:25:21:0,25,585 +chrX 1189257 . G . . END=1189257 GT:DP:GQ:MIN_DP:PL 0/0:21:0:21:0,0,551 +chrX 1189258 . G A, 691.06 . AS_QUALapprox=|705|0;AS_VarDP=2|18|0;BaseQRankSum=-0.750;DP=22;MQRankSum=0.000;QUALapprox=705;RAW_GT_COUNT=0,0,1;RAW_MQandDP=79200,22;ReadPosRankSum=0.063;VarDP=20 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:2,18,0:20:47:1|0:1189117_CCATATATAGTGTG_C:705,47,0,709,55,716:1189117:2,0,12,6 +chrX 1189259 . T . . END=1189260 GT:DP:GQ:MIN_DP:PL 0/0:25:40:25:0,40,739 +chrX 1189261 . G . . END=1189262 GT:DP:GQ:MIN_DP:PL 0/0:23:0:23:0,0,595 +chrX 1189263 . T . . END=1189263 GT:DP:GQ:MIN_DP:PL 0/0:25:40:25:0,40,780 +chrX 1189264 . G . . END=1189264 GT:DP:GQ:MIN_DP:PL 0/0:24:2:24:0,2,635 +chrX 1189265 . G . . END=1189266 GT:DP:GQ:MIN_DP:PL 0/0:24:37:24:0,37,714 +chrX 1189267 . C . . END=1189268 GT:DP:GQ:MIN_DP:PL 0/0:26:6:26:0,6,710 +chrX 1189269 . G . . END=1189271 GT:DP:GQ:MIN_DP:PL 0/0:27:43:27:0,43,784 +chrX 1189272 . A . . END=1189272 GT:DP:GQ:MIN_DP:PL 0/0:29:0:29:0,0,780 +chrX 1189273 . C . . END=1189463 GT:DP:GQ:MIN_DP:PL 0/0:46:46:46:0,46,768 +chrX 1189464 . G A, 670.64 . AS_QUALapprox=|678|0;AS_VarDP=23|27|0;BaseQRankSum=0.121;DP=52;MQRankSum=-0.883;QUALapprox=678;RAW_GT_COUNT=0,1,0;RAW_MQandDP=186409,52;ReadPosRankSum=-0.448;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:23,27,0:50:99:678,0,550,746,631,1376:10,13,12,15 +chrX 1189465 . A . . END=1189531 GT:DP:GQ:MIN_DP:PL 0/0:41:64:41:0,64,987 +chrX 1189532 . A G, 1127.06 . AS_QUALapprox=|1141|0;AS_VarDP=0|34|0;DP=38;QUALapprox=1141;RAW_GT_COUNT=0,0,1;RAW_MQandDP=134909,38;VarDP=34 GT:AD:DP:GQ:PL:SB 1/1:0,34,0:34:99:1141,102,0,1141,102,1141:0,0,17,17 +chrX 1189533 . A . . END=1189552 GT:DP:GQ:MIN_DP:PL 0/0:34:64:34:0,64,967 +chrX 1189553 . G GA, 372.60 . AS_QUALapprox=|380|0;AS_VarDP=16|18|0;BaseQRankSum=-1.459;DP=40;MQRankSum=-0.884;QUALapprox=380;RAW_GT_COUNT=0,1,0;RAW_MQandDP=142900,40;ReadPosRankSum=1.916;VarDP=34 GT:AD:DP:GQ:PL:SB 0/1:16,18,0:34:99:380,0,353,428,405,833:10,6,10,8 +chrX 1189554 . A . . END=1189698 GT:DP:GQ:MIN_DP:PL 0/0:52:70:52:0,70,1276 +chrX 1189699 . C A,G, 549.64 . AS_QUALapprox=|557|0|0;AS_VarDP=29|22|2|0;BaseQRankSum=1.474;DP=57;MQRankSum=0.000;QUALapprox=557;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=0.188;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:29,22,2,0:53:99:557,0,705,658,804,2092,691,836,1841,1780:16,13,14,10 +chrX 1189700 . G . . END=1190057 GT:DP:GQ:MIN_DP:PL 0/0:59:60:59:0,60,1444 +chrX 1190058 . G A, 878.64 . AS_QUALapprox=|886|0;AS_VarDP=16|24|0;BaseQRankSum=1.415;DP=44;MQRankSum=-0.212;QUALapprox=886;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154717,44;ReadPosRankSum=-1.143;VarDP=40 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:16,24,0:40:99:0|1:1190058_G_A:886,0,589,934,661,1595:1190058:7,9,14,10 +chrX 1190059 . G . . END=1190059 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,108,1620 +chrX 1190060 . T C, 1607.06 . AS_QUALapprox=|1621|0;AS_VarDP=1|38|0;BaseQRankSum=-0.781;DP=42;MQRankSum=-0.192;QUALapprox=1621;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147517,42;ReadPosRankSum=-1.369;VarDP=39 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:1,38,0:39:72:0|1:1190058_G_A:1621,72,0,1624,114,1666:1190058:0,1,21,17 +chrX 1190061 . G . . END=1190076 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,105,1130 +chrX 1190077 . G A, 505.64 . AS_QUALapprox=|513|0;AS_VarDP=25|14|0;BaseQRankSum=-2.618;DP=40;MQRankSum=-0.421;QUALapprox=513;RAW_GT_COUNT=0,1,0;RAW_MQandDP=142317,40;ReadPosRankSum=2.489;VarDP=39 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:25,14,0:39:99:1|0:1190058_G_A:513,0,997,588,1039,1627:1190058:14,11,7,7 +chrX 1190078 . T . . END=1190091 GT:DP:GQ:MIN_DP:PL 0/0:41:74:41:0,74,1216 +chrX 1190092 . C T, 493.64 . AS_QUALapprox=|501|0;AS_VarDP=29|14|0;BaseQRankSum=-0.508;DP=47;MQRankSum=-0.533;QUALapprox=501;RAW_GT_COUNT=0,1,0;RAW_MQandDP=167517,47;ReadPosRankSum=2.697;VarDP=43 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:29,14,0:43:99:1|0:1190058_G_A:501,0,1104,588,1146,1734:1190058:16,13,7,7 +chrX 1190093 . G . . END=1190357 GT:DP:GQ:MIN_DP:PL 0/0:48:57:48:0,57,1086 +chrX 1190358 . G A, 1817.06 . AS_QUALapprox=|1831|0;AS_VarDP=0|55|0;DP=58;QUALapprox=1831;RAW_GT_COUNT=0,0,1;RAW_MQandDP=206496,58;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1831,165,0,1831,165,1831:0,0,30,25 +chrX 1190359 . G . . END=1190737 GT:DP:GQ:MIN_DP:PL 0/0:63:83:63:0,83,1487 +chrX 1190738 . C T, 1089.64 . AS_QUALapprox=|1097|0;AS_VarDP=23|38|0;BaseQRankSum=2.301;DP=65;MQRankSum=0.000;QUALapprox=1097;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=1.757;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:23,38,0:61:99:1097,0,536,1167,650,1817:9,14,21,17 +chrX 1190739 . G . . END=1190828 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1190829 . G A, 653.64 . AS_QUALapprox=|661|0;AS_VarDP=34|24|0;BaseQRankSum=2.545;DP=58;MQRankSum=0.000;QUALapprox=661;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=1.785;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:34,24,0:58:99:661,0,895,762,968,1730:17,17,8,16 +chrX 1190830 . G . . END=1190962 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1190963 . G A, 364.64 . AS_QUALapprox=|372|0;AS_VarDP=39|16|0;BaseQRankSum=0.971;DP=60;MQRankSum=0.000;QUALapprox=372;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=0.056;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:39,16,0:55:99:372,0,1056,488,1104,1592:19,20,8,8 +chrX 1190964 . C . . END=1191073 GT:DP:GQ:MIN_DP:PL 0/0:46:73:46:0,73,1330 +chrX 1191074 . T C, 434.64 . AS_QUALapprox=|442|0;AS_VarDP=26|17|0;BaseQRankSum=0.352;DP=43;MQRankSum=0.000;QUALapprox=442;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154800,43;ReadPosRankSum=1.205;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:26,17,0:43:99:442,0,733,520,785,1304:12,14,11,6 +chrX 1191075 . A . . END=1191088 GT:DP:GQ:MIN_DP:PL 0/0:42:91:42:0,91,1320 +chrX 1191089 . G A, 476.64 . AS_QUALapprox=|484|0;AS_VarDP=26|18|0;BaseQRankSum=1.041;DP=46;MQRankSum=0.000;QUALapprox=484;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=0.884;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:26,18,0:44:99:484,0,711,562,765,1326:13,13,12,6 +chrX 1191090 . G . . END=1191289 GT:DP:GQ:MIN_DP:PL 0/0:62:22:61:0,22,1541 +chrX 1191290 . C . . END=1191290 GT:DP:GQ:MIN_DP:PL 0/0:59:0:59:0,0,1573 +chrX 1191291 . T . . END=1191292 GT:DP:GQ:MIN_DP:PL 0/0:60:93:60:0,93,1772 +chrX 1191293 . T . . END=1191294 GT:DP:GQ:MIN_DP:PL 0/0:59:0:59:0,0,1488 +chrX 1191295 . C CTCTT,CTCTTTCTTTCCT, 858.02 . AS_QUALapprox=|186|734|0;AS_VarDP=3|7|24|0;BaseQRankSum=2.559;DP=55;MQRankSum=0.000;QUALapprox=875;RAW_GT_COUNT=0,0,1;RAW_MQandDP=197881,55;ReadPosRankSum=-1.185;VarDP=34 GT:AD:DP:GQ:PL:SB 1/2:3,7,24,0:34:99:875,689,762,141,0,549,933,808,439,1197:2,1,11,20 +chrX 1191296 . T . . END=1191361 GT:DP:GQ:MIN_DP:PL 0/0:37:21:33:0,21,855 +chrX 1191362 . C . . END=1191362 GT:DP:GQ:MIN_DP:PL 0/0:36:13:36:0,13,941 +chrX 1191363 . T . . END=1191655 GT:DP:GQ:MIN_DP:PL 0/0:56:61:56:0,61,1296 +chrX 1191656 . T C, 1753.06 . AS_QUALapprox=|1767|0;AS_VarDP=0|55|0;DP=57;QUALapprox=1767;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1767,165,0,1767,165,1767:0,0,27,28 +chrX 1191657 . G . . END=1191802 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,104,1304 +chrX 1191803 . C T, 913.64 . AS_QUALapprox=|921|0;AS_VarDP=22|24|0;BaseQRankSum=-0.989;DP=49;MQRankSum=0.000;QUALapprox=921;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=2.203;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,24,0:46:99:0|1:1191803_C_T:921,0,830,987,902,1889:1191803:8,14,12,12 +chrX 1191804 . C . . END=1191809 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,120,1800 +chrX 1191810 . T C, 916.64 . AS_QUALapprox=|924|0;AS_VarDP=21|24|0;BaseQRankSum=-1.869;DP=46;MQRankSum=0.000;QUALapprox=924;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=1.686;VarDP=45 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,24,0:45:99:0|1:1191803_C_T:924,0,799,987,872,1858:1191803:7,14,12,12 +chrX 1191811 . G . . END=1191970 GT:DP:GQ:MIN_DP:PL 0/0:45:87:45:0,87,1185 +chrX 1191971 . C T, 898.64 . AS_QUALapprox=|906|0;AS_VarDP=20|23|0;BaseQRankSum=0.756;DP=45;MQRankSum=-2.406;QUALapprox=906;RAW_GT_COUNT=0,1,0;RAW_MQandDP=149265,45;ReadPosRankSum=1.657;VarDP=43 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:20,23,0:43:99:0|1:1191971_C_T:906,0,759,966,828,1794:1191971:12,8,6,17 +chrX 1191972 . A G, 898.64 . AS_QUALapprox=|906|0;AS_VarDP=20|23|0;BaseQRankSum=-0.098;DP=45;MQRankSum=-2.406;QUALapprox=906;RAW_GT_COUNT=0,1,0;RAW_MQandDP=149265,45;ReadPosRankSum=1.315;VarDP=43 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:20,23,0:43:99:0|1:1191971_C_T:906,0,759,966,828,1794:1191971:12,8,6,17 +chrX 1191973 . A . . END=1191973 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,114,1710 +chrX 1191974 . G A, 901.64 . AS_QUALapprox=|909|0;AS_VarDP=19|23|0;BaseQRankSum=-0.093;DP=43;MQRankSum=-2.347;QUALapprox=909;RAW_GT_COUNT=0,1,0;RAW_MQandDP=142065,43;ReadPosRankSum=1.197;VarDP=42 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:19,23,0:42:99:0|1:1191971_C_T:909,0,729,966,798,1764:1191971:11,8,6,17 +chrX 1191975 . G . . END=1191975 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,114,1271 +chrX 1191976 . T C, 862.64 . AS_QUALapprox=|870|0;AS_VarDP=18|22|0;BaseQRankSum=-0.306;DP=41;MQRankSum=-2.342;QUALapprox=870;RAW_GT_COUNT=0,1,0;RAW_MQandDP=134865,41;ReadPosRankSum=1.007;VarDP=40 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:18,22,0:40:99:0|1:1191971_C_T:870,0,690,924,756,1680:1191971:11,7,5,17 +chrX 1191977 . G . . END=1191979 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,114,1710 +chrX 1191980 . T C, 862.64 . AS_QUALapprox=|870|0;AS_VarDP=18|22|0;BaseQRankSum=-0.262;DP=41;MQRankSum=-2.342;QUALapprox=870;RAW_GT_COUNT=0,1,0;RAW_MQandDP=134865,41;ReadPosRankSum=0.680;VarDP=40 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:18,22,0:40:99:0|1:1191971_C_T:870,0,690,924,756,1680:1191971:11,7,5,17 +chrX 1191981 . G . . END=1191986 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,111,1240 +chrX 1191987 . T C, 907.64 . AS_QUALapprox=|915|0;AS_VarDP=17|23|0;BaseQRankSum=-0.085;DP=41;MQRankSum=-2.438;QUALapprox=915;RAW_GT_COUNT=0,1,0;RAW_MQandDP=133474,41;ReadPosRankSum=-0.241;VarDP=40 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:17,23,0:40:99:0|1:1191971_C_T:915,0,645,966,714,1680:1191971:10,7,5,18 +chrX 1191988 . G A, 865.64 . AS_QUALapprox=|873|0;AS_VarDP=17|22|0;BaseQRankSum=0.807;DP=40;MQRankSum=-2.498;QUALapprox=873;RAW_GT_COUNT=0,1,0;RAW_MQandDP=129874,40;ReadPosRankSum=-0.340;VarDP=39 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:17,22,0:39:99:0|1:1191971_C_T:873,0,648,924,714,1638:1191971:10,7,4,18 +chrX 1191989 . A . . END=1191992 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,105,1195 +chrX 1191993 . G C, 865.64 . AS_QUALapprox=|873|0;AS_VarDP=17|22|0;BaseQRankSum=-0.195;DP=40;MQRankSum=-2.498;QUALapprox=873;RAW_GT_COUNT=0,1,0;RAW_MQandDP=129874,40;ReadPosRankSum=-0.794;VarDP=39 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:17,22,0:39:99:0|1:1191971_C_T:873,0,648,924,714,1638:1191971:10,7,4,18 +chrX 1191994 . A . . END=1192020 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1440 +chrX 1192021 . T C, 467.64 . AS_QUALapprox=|475|0;AS_VarDP=19|18|0;BaseQRankSum=-0.380;DP=38;MQRankSum=-3.679;QUALapprox=475;RAW_GT_COUNT=0,1,0;RAW_MQandDP=117283,38;ReadPosRankSum=-1.931;VarDP=37 GT:AD:DP:GQ:PL:SB 0/1:19,18,0:37:99:475,0,504,532,559,1090:10,9,4,14 +chrX 1192022 . G . . END=1192067 GT:DP:GQ:MIN_DP:PL 0/0:35:90:35:0,90,1097 +chrX 1192068 . G A, 335.64 . AS_QUALapprox=|343|0;AS_VarDP=21|13|0;BaseQRankSum=2.319;DP=37;MQRankSum=-4.960;QUALapprox=343;RAW_GT_COUNT=0,1,0;RAW_MQandDP=102078,37;ReadPosRankSum=0.691;VarDP=34 GT:AD:DP:GQ:PL:SB 0/1:21,13,0:34:99:343,0,543,406,582,988:12,9,5,8 +chrX 1192069 . G . . END=1192096 GT:DP:GQ:MIN_DP:PL 0/0:30:72:30:0,72,849 +chrX 1192097 . T C, 255.64 . AS_QUALapprox=|263|0;AS_VarDP=16|10|0;BaseQRankSum=1.473;DP=29;MQRankSum=-3.642;QUALapprox=263;RAW_GT_COUNT=0,1,0;RAW_MQandDP=72382,29;ReadPosRankSum=1.662;VarDP=26 GT:AD:DP:GQ:PL:SB 0/1:16,10,0:26:99:263,0,433,311,463,774:8,8,6,4 +chrX 1192098 . G . . END=1192159 GT:DP:GQ:MIN_DP:PL 0/0:33:52:33:0,52,919 +chrX 1192160 . C G, 585.64 . AS_QUALapprox=|593|0;AS_VarDP=13|17|0;BaseQRankSum=-2.661;DP=30;MQRankSum=-2.766;QUALapprox=593;RAW_GT_COUNT=0,1,0;RAW_MQandDP=77236,30;ReadPosRankSum=-0.286;VarDP=30 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:13,17,0:30:99:0|1:1192160_C_G:593,0,474,632,525,1157:1192160:10,3,12,5 +chrX 1192161 . C . . END=1192183 GT:DP:GQ:MIN_DP:PL 0/0:28:56:28:0,56,810 +chrX 1192184 . G A, 540.64 . AS_QUALapprox=|548|0;AS_VarDP=17|15|0;BaseQRankSum=1.347;DP=33;MQRankSum=-2.224;QUALapprox=548;RAW_GT_COUNT=0,1,0;RAW_MQandDP=95731,33;ReadPosRankSum=1.039;VarDP=32 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:17,15,0:32:99:0|1:1192160_C_G:548,0,607,599,652,1251:1192160:15,2,11,4 +chrX 1192185 . A . . END=1192219 GT:DP:GQ:MIN_DP:PL 0/0:36:78:36:0,78,1092 +chrX 1192220 . A C, 717.64 . AS_QUALapprox=|725|0;AS_VarDP=26|22|0;BaseQRankSum=-2.230;DP=49;MQRankSum=-0.324;QUALapprox=725;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165197,49;ReadPosRankSum=0.704;VarDP=48 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,22,0:48:99:0|1:1192220_A_C:725,0,895,803,961,1764:1192220:20,6,16,6 +chrX 1192221 . C A, 717.64 . AS_QUALapprox=|725|0;AS_VarDP=26|22|0;BaseQRankSum=-0.383;DP=49;MQRankSum=-0.324;QUALapprox=725;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165197,49;ReadPosRankSum=0.756;VarDP=48 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,22,0:48:99:0|1:1192220_A_C:725,0,895,803,961,1764:1192220:20,6,16,6 +chrX 1192222 . A . . END=1192563 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,99,1800 +chrX 1192564 . C A, 824.64 . AS_QUALapprox=|832|0;AS_VarDP=34|31|0;BaseQRankSum=1.982;DP=65;MQRankSum=-0.686;QUALapprox=832;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230976,65;ReadPosRankSum=-0.243;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:34,31,0:65:99:832,0,856,934,949,1884:12,22,13,18 +chrX 1192565 . G . . END=1192706 GT:DP:GQ:MIN_DP:PL 0/0:67:82:67:0,82,1554 +chrX 1192707 . C . . END=1192707 GT:DP:GQ:MIN_DP:PL 0/0:52:17:52:0,17,1249 +chrX 1192708 . TTTTCTTTCTTTCTTTCTTTC T,TTTTCTTTCTTTCTTTCTTTCTTTCTTTC, 1207.02 . AS_QUALapprox=|806|447|0;AS_VarDP=0|21|10|0;DP=55;QUALapprox=1224;RAW_GT_COUNT=0,0,1;RAW_MQandDP=192946,55;VarDP=31 GT:AD:DP:GQ:PL:SB 1/2:0,21,10,0:31:99:1224,418,689,805,0,777,1248,599,830,1405:0,0,11,20 +chrX 1192729 . T . . END=1192768 GT:DP:GQ:MIN_DP:PL 0/0:60:45:60:0,45,1485 +chrX 1192769 . C . . END=1192769 GT:DP:GQ:MIN_DP:PL 0/0:54:0:54:0,0,1359 +chrX 1192770 . T . . END=1193296 GT:DP:GQ:MIN_DP:PL 0/0:53:81:53:0,81,1152 +chrX 1193297 . T C, 2336.06 . AS_QUALapprox=|2350|0;AS_VarDP=0|56|0;DP=57;QUALapprox=2350;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,56,0:56:99:0|1:1193297_T_C:2350,168,0,2350,168,2350:1193297:0,0,32,24 +chrX 1193298 . T . . END=1193321 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 1193322 . C T, 2105.06 . AS_QUALapprox=|2119|0;AS_VarDP=0|49|0;DP=50;QUALapprox=2119;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,49,0:49:99:0|1:1193297_T_C:2119,147,0,2119,147,2119:1193297:0,0,27,22 +chrX 1193323 . G . . END=1193779 GT:DP:GQ:MIN_DP:PL 0/0:40:32:39:0,32,1092 +chrX 1193780 . T . . END=1193780 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,1017 +chrX 1193781 . C CA, 424.03 . AS_QUALapprox=|438|0;AS_VarDP=0|23|0;DP=41;QUALapprox=438;RAW_GT_COUNT=0,0,1;RAW_MQandDP=138214,41;VarDP=23 GT:AD:DP:GQ:PL:SB 1/1:0,23,0:23:68:438,68,0,439,68,439:0,0,13,10 +chrX 1193782 . A . . END=1193852 GT:DP:GQ:MIN_DP:PL 0/0:46:50:46:0,50,1011 +chrX 1193853 . C G,T, 1539.06 . AS_QUALapprox=|20|1553|0;AS_VarDP=0|2|48|0;DP=52;QUALapprox=1553;RAW_GT_COUNT=0,0,1;RAW_MQandDP=184516,52;VarDP=50 GT:AD:DP:GQ:PL:SB 2/2:0,2,48,0:50:99:1553,1538,1533,143,129,0,1552,1538,143,1552:0,0,27,23 +chrX 1193854 . G . . END=1193955 GT:DP:GQ:MIN_DP:PL 0/0:54:90:54:0,90,1485 +chrX 1193956 . G A, 1143.06 . AS_QUALapprox=|1157|0;AS_VarDP=1|35|0;BaseQRankSum=2.677;DP=42;MQRankSum=2.823;QUALapprox=1157;RAW_GT_COUNT=0,0,1;RAW_MQandDP=144358,42;ReadPosRankSum=-1.637;VarDP=36 GT:AD:DP:GQ:PL:SB 1/1:1,35,0:36:98:1157,98,0,1160,105,1166:1,0,14,21 +chrX 1193957 . T . . END=1194152 GT:DP:GQ:MIN_DP:PL 0/0:58:69:58:0,69,1257 +chrX 1194153 . G C, 1301.06 . AS_QUALapprox=|1315|0;AS_VarDP=2|42|0;BaseQRankSum=2.855;DP=47;MQRankSum=-0.322;QUALapprox=1315;RAW_GT_COUNT=0,0,1;RAW_MQandDP=167586,47;ReadPosRankSum=-0.028;VarDP=44 GT:AD:DP:GQ:PL:SB 1/1:2,42,0:44:99:1315,112,0,1320,126,1334:1,1,23,19 +chrX 1194154 . G . . END=1194225 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,107,1672 +chrX 1194226 . A G, 2415.06 . AS_QUALapprox=|2429|0;AS_VarDP=0|55|0;DP=57;QUALapprox=2429;RAW_GT_COUNT=0,0,1;RAW_MQandDP=203586,57;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,55,0:55:99:0|1:1194226_A_G:2429,165,0,2429,165,2429:1194226:0,0,30,25 +chrX 1194227 . C . . END=1194238 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 1194239 . A G, 2550.06 . AS_QUALapprox=|2564|0;AS_VarDP=0|58|0;DP=60;QUALapprox=2564;RAW_GT_COUNT=0,0,1;RAW_MQandDP=214386,60;VarDP=58 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,58,0:58:99:0|1:1194226_A_G:2564,174,0,2564,174,2564:1194226:0,0,33,25 +chrX 1194240 . A . . END=1194250 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 1194251 . G C, 2658.06 . AS_QUALapprox=|2672|0;AS_VarDP=0|63|0;DP=65;QUALapprox=2672;RAW_GT_COUNT=0,0,1;RAW_MQandDP=231702,65;VarDP=63 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,63,0:63:99:0|1:1194226_A_G:2672,189,0,2672,189,2672:1194226:0,0,35,28 +chrX 1194252 . T . . END=1194330 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1194331 . A G, 2730.06 . AS_QUALapprox=|2744|0;AS_VarDP=0|64|0;DP=65;QUALapprox=2744;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230741,65;VarDP=64 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,64,0:64:99:0|1:1194331_A_G:2744,192,0,2744,192,2744:1194331:0,0,36,28 +chrX 1194332 . G . . END=1194350 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 1194351 . G A, 2905.06 . AS_QUALapprox=|2919|0;AS_VarDP=0|69|0;DP=71;QUALapprox=2919;RAW_GT_COUNT=0,0,1;RAW_MQandDP=250341,71;VarDP=69 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,69,0:69:99:0|1:1194331_A_G:2919,207,0,2919,207,2919:1194331:0,0,39,30 +chrX 1194352 . C . . END=1194439 GT:DP:GQ:MIN_DP:PL 0/0:77:99:77:0,120,1800 +chrX 1194440 . T C, 3054.06 . AS_QUALapprox=|3068|0;AS_VarDP=0|72|0;DP=73;QUALapprox=3068;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;VarDP=72 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,72,0:72:99:0|1:1194440_T_C:3068,216,0,3068,216,3068:1194440:0,0,28,44 +chrX 1194441 . G . . END=1194447 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1194448 . T C, 2951.06 . AS_QUALapprox=|2965|0;AS_VarDP=0|69|0;DP=70;QUALapprox=2965;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;VarDP=69 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,69,0:69:99:0|1:1194440_T_C:2965,207,0,2965,207,2965:1194440:0,0,27,42 +chrX 1194449 . G . . END=1194463 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1194464 . A G, 2082.06 . AS_QUALapprox=|2096|0;AS_VarDP=0|63|0;DP=64;QUALapprox=2096;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=63 GT:AD:DP:GQ:PL:SB 1/1:0,63,0:63:99:2096,189,0,2096,189,2096:0,0,18,45 +chrX 1194465 . A . . END=1194500 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1194501 . C T, 1987.06 . AS_QUALapprox=|2001|0;AS_VarDP=0|59|0;DP=60;QUALapprox=2001;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:2001,177,0,2001,177,2001:0,0,14,45 +chrX 1194502 . A . . END=1194527 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 1194528 . A G, 1766.06 . AS_QUALapprox=|1780|0;AS_VarDP=0|54|0;DP=56;QUALapprox=1780;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:1780,162,0,1780,162,1780:0,0,15,39 +chrX 1194529 . G . . END=1194627 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 1194628 . G A, 1623.06 . AS_QUALapprox=|1637|0;AS_VarDP=0|49|0;DP=50;QUALapprox=1637;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1637,147,0,1637,147,1637:0,0,28,21 +chrX 1194629 . A . . END=1194681 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 1194682 . A G, 1817.06 . AS_QUALapprox=|1831|0;AS_VarDP=0|57|0;DP=57;QUALapprox=1831;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1831,170,0,1831,170,1831:0,0,36,21 +chrX 1194683 . G . . END=1194743 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 1194744 . A G, 1781.06 . AS_QUALapprox=|1795|0;AS_VarDP=0|57|0;DP=59;QUALapprox=1795;RAW_GT_COUNT=0,0,1;RAW_MQandDP=209824,59;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1795,170,0,1795,170,1795:0,0,35,22 +chrX 1194745 . A . . END=1195066 GT:DP:GQ:MIN_DP:PL 0/0:58:51:58:0,51,858 +chrX 1195067 . C G, 929.06 . AS_QUALapprox=|943|0;AS_VarDP=0|28|0;DP=32;QUALapprox=943;RAW_GT_COUNT=0,0,1;RAW_MQandDP=114304,32;VarDP=28 GT:AD:DP:GQ:PL:SB 1/1:0,28,0:28:84:943,84,0,943,84,943:0,0,18,10 +chrX 1195068 . T . . END=1195408 GT:DP:GQ:MIN_DP:PL 0/0:57:44:57:0,44,848 +chrX 1195409 . T C, 1851.06 . AS_QUALapprox=|1865|0;AS_VarDP=1|59|0;BaseQRankSum=-0.457;DP=63;MQRankSum=0.000;QUALapprox=1865;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;ReadPosRankSum=-0.491;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:1,59,0:60:99:1865,145,0,1868,176,1900:1,0,32,27 +chrX 1195410 . T . . END=1195453 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1195454 . G C, 1913.06 . AS_QUALapprox=|1927|0;AS_VarDP=0|59|0;DP=62;QUALapprox=1927;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1927,177,0,1927,177,1927:0,0,28,31 +chrX 1195455 . T . . END=1195634 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,101,1445 +chrX 1195635 . T A, 1886.06 . AS_QUALapprox=|1900|0;AS_VarDP=0|59|0;DP=64;QUALapprox=1900;RAW_GT_COUNT=0,0,1;RAW_MQandDP=228825,64;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1900,176,0,1900,176,1900:0,0,26,33 +chrX 1195636 . G . . END=1195720 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,107,1800 +chrX 1195721 . G C, 1879.06 . AS_QUALapprox=|1893|0;AS_VarDP=0|60|0;DP=63;QUALapprox=1893;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:1893,179,0,1893,179,1893:0,0,22,38 +chrX 1195722 . T . . END=1195816 GT:DP:GQ:MIN_DP:PL 0/0:65:31:53:0,31,1539 +chrX 1195817 . A ATATATAT, 2450.03 . AS_QUALapprox=|2464|0;AS_VarDP=0|55|0;DP=61;QUALapprox=2464;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:2464,165,0,2464,166,2465:0,0,31,24 +chrX 1195818 . T . . END=1196035 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,100,1378 +chrX 1196036 . A G, 1498.06 . AS_QUALapprox=|1512|0;AS_VarDP=0|48|0;DP=51;QUALapprox=1512;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180900,51;VarDP=48 GT:AD:DP:GQ:PL:SB 1/1:0,48,0:48:99:1512,144,0,1512,144,1512:0,0,23,25 +chrX 1196037 . C . . END=1196077 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,114,1439 +chrX 1196078 . T G, 2023.06 . AS_QUALapprox=|2037|0;AS_VarDP=0|46|0;DP=49;QUALapprox=2037;RAW_GT_COUNT=0,0,1;RAW_MQandDP=170725,49;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,46,0:46:99:0|1:1196078_T_G:2037,138,0,2037,138,2037:1196078:0,0,22,24 +chrX 1196079 . T C, 2023.06 . AS_QUALapprox=|2037|0;AS_VarDP=0|46|0;DP=47;QUALapprox=2037;RAW_GT_COUNT=0,0,1;RAW_MQandDP=163525,47;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,46,0:46:99:0|1:1196078_T_G:2037,138,0,2037,138,2037:1196078:0,0,22,24 +chrX 1196080 . C . . END=1196186 GT:DP:GQ:MIN_DP:PL 0/0:50:68:50:0,68,1177 +chrX 1196187 . AT A, 494.03 . AS_QUALapprox=|508|0;AS_VarDP=0|22|0;DP=38;QUALapprox=508;RAW_GT_COUNT=0,0,1;RAW_MQandDP=134800,38;VarDP=22 GT:AD:DP:GQ:PL:SB 1/1:0,22,0:22:66:508,66,0,508,66,508:0,0,9,13 +chrX 1196189 . T . . END=1196541 GT:DP:GQ:MIN_DP:PL 0/0:46:47:46:0,47,893 +chrX 1196542 . C T, 1520.06 . AS_QUALapprox=|1534|0;AS_VarDP=0|45|0;DP=48;QUALapprox=1534;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172225,48;VarDP=45 GT:AD:DP:GQ:PL:SB 1/1:0,45,0:45:99:1534,135,0,1534,135,1534:0,0,25,20 +chrX 1196543 . G . . END=1196579 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 1196580 . C G, 1697.06 . AS_QUALapprox=|1711|0;AS_VarDP=0|55|0;DP=55;QUALapprox=1711;RAW_GT_COUNT=0,0,1;RAW_MQandDP=197425,55;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1711,164,0,1711,164,1711:0,0,28,27 +chrX 1196581 . C . . END=1196616 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 1196617 . A G, 1562.06 . AS_QUALapprox=|1576|0;AS_VarDP=0|52|0;DP=55;QUALapprox=1576;RAW_GT_COUNT=0,0,1;RAW_MQandDP=197425,55;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1576,154,0,1576,154,1576:0,0,23,29 +chrX 1196618 . G . . END=1196920 GT:DP:GQ:MIN_DP:PL 0/0:53:77:53:0,77,1296 +chrX 1196921 . G A, 436.64 . AS_QUALapprox=|444|0;AS_VarDP=32|17|0;BaseQRankSum=2.890;DP=51;MQRankSum=0.000;QUALapprox=444;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=0.914;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:32,17,0:49:99:444,0,845,540,896,1436:17,15,9,8 +chrX 1196922 . G . . END=1197610 GT:DP:GQ:MIN_DP:PL 0/0:53:35:48:0,35,1192 +chrX 1197611 . C T, 2039.06 . AS_QUALapprox=|2053|0;AS_VarDP=0|62|0;DP=66;QUALapprox=2053;RAW_GT_COUNT=0,0,1;RAW_MQandDP=235600,66;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:0,62,0:62:99:2053,186,0,2053,186,2053:0,0,31,31 +chrX 1197612 . G . . END=1197766 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 1197767 . C T, 1722.06 . AS_QUALapprox=|1736|0;AS_VarDP=1|57|0;BaseQRankSum=1.269;DP=58;MQRankSum=0.000;QUALapprox=1736;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208564,58;ReadPosRankSum=-1.106;VarDP=58 GT:AD:DP:GQ:PL:SB 1/1:1,57,0:58:99:1736,149,0,1739,171,1761:0,1,22,35 +chrX 1197768 . C . . END=1198145 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,115,1800 +chrX 1198146 . C . . END=1198181 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,744 +chrX 1198182 . TCCCAGGAAGGCAGGACACCC T, 238.04 . AS_QUALapprox=|398|0;AS_VarDP=31|18|0;BaseQRankSum=-0.429;DP=53;MQRankSum=3.663;QUALapprox=398;RAW_GT_COUNT=0,1,0;RAW_MQandDP=127461,53;ReadPosRankSum=0.527;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:31,18,0:49:99:0|1:1198182_TCCCAGGAAGGCAGGACACCC_T:398,0,881,436,709,1075:1198182:12,2,5,9 +chrX 1198203 . TCCCTCCCACCTCGAAGGCAGGACACCCTCCCTCCCACCTC T, 189.60 . AS_QUALapprox=|197|0;AS_VarDP=56|14|0;BaseQRankSum=0.560;DP=72;MQRankSum=2.903;QUALapprox=197;RAW_GT_COUNT=0,1,0;RAW_MQandDP=160915,72;ReadPosRankSum=-0.123;VarDP=70 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:56,14,0:70:99:0|1:1198182_TCCCAGGAAGGCAGGACACCC_T:197,0,1445,362,1486,1848:1198182:24,32,5,9 +chrX 1198244 . C . . END=1198276 GT:DP:GQ:MIN_DP:PL 0/0:104:99:104:0,120,1800 +chrX 1198277 . C . . END=1198277 GT:DP:GQ:MIN_DP:PL 0/0:95:0:95:0,0,1526 +chrX 1198278 . A . . END=1198314 GT:DP:GQ:MIN_DP:PL 0/0:113:99:113:0,120,1800 +chrX 1198315 . G . . END=1198315 GT:DP:GQ:MIN_DP:PL 0/0:102:0:102:0,0,1449 +chrX 1198316 . G . . END=1198344 GT:DP:GQ:MIN_DP:PL 0/0:99:33:95:0,33,1800 +chrX 1198345 . C . . END=1198345 GT:DP:GQ:MIN_DP:PL 0/0:94:0:94:0,0,2421 +chrX 1198346 . A . . END=1198351 GT:DP:GQ:MIN_DP:PL 0/0:96:99:96:0,120,1800 +chrX 1198352 . G GCCTCCCTCCCACCTCCCGGGAAGATAGGACAC, 123.61 . AS_QUALapprox=|131|0;AS_VarDP=1|4|0;DP=47;MQRankSum=0.524;QUALapprox=131;RAW_GT_COUNT=0,1,0;RAW_MQandDP=128641,47;ReadPosRankSum=-1.282;VarDP=5 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:1,4,0:5:16:0|1:1198352_G_GCCTCCCTCCCACCTCCCGGGAAGATAGGACAC:131,0,16,151,28,179:1198352:1,0,4,0 +chrX 1198353 . C . . END=1198376 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,114,1710 +chrX 1198377 . TAGGACACCCTCCCTCCCACCTCGAAGGC T, 115.60 . AS_QUALapprox=|123|0;AS_VarDP=25|7|0;BaseQRankSum=0.464;DP=75;MQRankSum=1.678;QUALapprox=123;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208102,75;ReadPosRankSum=-1.451;VarDP=32 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:25,7,0:32:99:1|0:1198352_G_GCCTCCCTCCCACCTCCCGGGAAGATAGGACAC:123,0,615,185,647,832:1198352:22,3,6,1 +chrX 1198406 . A . . END=1198429 GT:DP:GQ:MIN_DP:PL 0/0:58:72:58:0,72,1468 +chrX 1198430 . A G, 144.64 . AS_QUALapprox=|152|0;AS_VarDP=32|9|0;BaseQRankSum=0.730;DP=70;MQRankSum=1.845;QUALapprox=152;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190894,70;ReadPosRankSum=-1.024;VarDP=41 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:32,9,0:41:99:1|0:1198352_G_GCCTCCCTCCCACCTCCCGGGAAGATAGGACAC:152,0,780,235,814,1049:1198352:26,6,6,3 +chrX 1198431 . G . . END=1198435 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,116,1784 +chrX 1198436 . G A, 171.64 . AS_QUALapprox=|179|0;AS_VarDP=32|10|0;BaseQRankSum=0.081;DP=67;MQRankSum=1.971;QUALapprox=179;RAW_GT_COUNT=0,1,0;RAW_MQandDP=184059,67;ReadPosRankSum=-0.410;VarDP=42 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:32,10,0:42:99:1|0:1198352_G_GCCTCCCTCCCACCTCCCGGGAAGATAGGACAC:179,0,774,262,809,1071:1198352:26,6,7,3 +chrX 1198437 . C T, 172.64 . AS_QUALapprox=|180|0;AS_VarDP=32|10|0;BaseQRankSum=0.105;DP=68;MQRankSum=1.971;QUALapprox=180;RAW_GT_COUNT=0,1,0;RAW_MQandDP=188759,68;ReadPosRankSum=-0.668;VarDP=42 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:32,10,0:42:99:1|0:1198352_G_GCCTCCCTCCCACCTCCCGGGAAGATAGGACAC:180,0,773,262,809,1071:1198352:26,6,7,3 +chrX 1198438 . A . . END=1198546 GT:DP:GQ:MIN_DP:PL 0/0:50:37:45:0,37,1330 +chrX 1198547 . C T, 2456.06 . AS_QUALapprox=|2470|0;AS_VarDP=0|76|0;DP=82;QUALapprox=2470;RAW_GT_COUNT=0,0,1;RAW_MQandDP=295200,82;VarDP=76 GT:AD:DP:GQ:PL:SB 1/1:0,76,0:76:99:2470,228,0,2470,228,2470:0,0,37,39 +chrX 1198548 . G . . END=1198739 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,99,1620 +chrX 1198740 . C CAT, 2107.03 . AS_QUALapprox=|2121|0;AS_VarDP=0|58|0;DP=62;QUALapprox=2121;RAW_GT_COUNT=0,0,1;RAW_MQandDP=222849,62;VarDP=58 GT:AD:DP:GQ:PL:SB 1/1:0,58,0:58:99:2121,172,0,2122,172,2122:0,0,29,29 +chrX 1198741 . A . . END=1198741 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1198742 . C . . END=1198742 GT:DP:GQ:MIN_DP:PL 0/0:68:0:68:0,0,716 +chrX 1198743 . A . . END=1199900 GT:DP:GQ:MIN_DP:PL 0/0:62:33:56:0,33,1076 +chrX 1199901 . G . . END=1199901 GT:DP:GQ:MIN_DP:PL 0/0:63:11:63:0,11,1663 +chrX 1199902 . T . . END=1199903 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1199904 . T . . END=1199905 GT:DP:GQ:MIN_DP:PL 0/0:60:0:60:0,0,1493 +chrX 1199906 . T . . END=1199906 GT:DP:GQ:MIN_DP:PL 0/0:58:21:58:0,21,1558 +chrX 1199907 . A . . END=1199920 GT:DP:GQ:MIN_DP:PL 0/0:56:0:56:0,0,1265 +chrX 1199921 . G . . END=1199921 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 1199922 . C . . END=1199927 GT:DP:GQ:MIN_DP:PL 0/0:56:0:56:0,0,1181 +chrX 1199928 . A ACGTGTGTTG, 2235.03 . AS_QUALapprox=|2249|0;AS_VarDP=0|50|0;DP=52;QUALapprox=2249;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,50,0:50:99:0|1:1199928_A_ACGTGTGTTG:2249,150,0,2250,151,2250:1199928:0,0,21,29 +chrX 1199929 . T . . END=1199931 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,120,1800 +chrX 1199932 . A ATATATGT, 2315.03 . AS_QUALapprox=|2329|0;AS_VarDP=0|52|0;DP=52;QUALapprox=2329;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,52,0:52:99:0|1:1199928_A_ACGTGTGTTG:2329,157,0,2329,157,2329:1199928:0,0,22,30 +chrX 1199933 . A . . END=1199933 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,120,1800 +chrX 1199934 . G T, 2314.06 . AS_QUALapprox=|2328|0;AS_VarDP=0|52|0;DP=53;QUALapprox=2328;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,52,0:52:99:0|1:1199928_A_ACGTGTGTTG:2328,156,0,2329,157,2329:1199928:0,0,22,30 +chrX 1199935 . G . . END=1199935 GT:DP:GQ:MIN_DP:PL 0/0:56:0:56:0,0,1142 +chrX 1199936 . T . . END=1200031 GT:DP:GQ:MIN_DP:PL 0/0:57:61:57:0,61,1449 +chrX 1200032 . T . . END=1200071 GT:DP:GQ:MIN_DP:PL 0/0:53:0:53:0,0,1267 +chrX 1200072 . A ATG, 2025.76 . AS_QUALapprox=|2040|0;AS_VarDP=0|50|0;DP=61;QUALapprox=2040;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:2040,150,0,2092,162,2235:0,0,26,24 +chrX 1200073 . T . . END=1200103 GT:DP:GQ:MIN_DP:PL 0/0:53:0:53:0,0,1310 +chrX 1200104 . G GTA, 1813 . AS_QUALapprox=|1853|0;AS_VarDP=0|43|0;DP=57;QUALapprox=1853;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=43 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,43,0:43:99:0|1:1200104_G_GTA:1853,129,0,1887,150,2051:1200104:0,0,20,23 +chrX 1200105 . T . . END=1200126 GT:DP:GQ:MIN_DP:PL 0/0:54:0:54:0,0,1255 +chrX 1200127 . C A, 1968.04 . AS_QUALapprox=|2009|0;AS_VarDP=0|49|0;DP=57;QUALapprox=2009;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,49,0:49:99:0|1:1200104_G_GTA:2009,147,0,2040,150,2129:1200104:0,0,25,24 +chrX 1200128 . T . . END=1200164 GT:DP:GQ:MIN_DP:PL 0/0:55:0:55:0,0,1161 +chrX 1200165 . G . . END=1200318 GT:DP:GQ:MIN_DP:PL 0/0:56:29:50:0,29,1343 +chrX 1200319 . G A, 2087.06 . AS_QUALapprox=|2101|0;AS_VarDP=0|49|0;DP=51;QUALapprox=2101;RAW_GT_COUNT=0,0,1;RAW_MQandDP=181681,51;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,49,0:49:99:0|1:1200319_G_A:2101,147,0,2101,147,2101:1200319:0,0,20,29 +chrX 1200320 . T . . END=1200328 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,120,1800 +chrX 1200329 . ATG A, 2273.03 . AS_QUALapprox=|2287|0;AS_VarDP=0|52|0;DP=52;QUALapprox=2287;RAW_GT_COUNT=0,0,1;RAW_MQandDP=185281,52;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,52,0:52:99:0|1:1200319_G_A:2287,157,0,2287,157,2287:1200319:0,0,23,29 +chrX 1200332 . T . . END=1200334 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 1200335 . G . . END=1200335 GT:DP:GQ:MIN_DP:PL 0/0:50:11:50:0,11,1380 +chrX 1200336 . T . . END=1200339 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 1200340 . T . . END=1200341 GT:DP:GQ:MIN_DP:PL 0/0:49:18:49:0,18,1385 +chrX 1200342 . A . . END=1200342 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 1200343 . G . . END=1200344 GT:DP:GQ:MIN_DP:PL 0/0:49:5:49:0,5,1330 +chrX 1200345 . T . . END=1200349 GT:DP:GQ:MIN_DP:PL 0/0:48:22:47:0,22,1296 +chrX 1200350 . A . . END=1200350 GT:DP:GQ:MIN_DP:PL 0/0:47:12:47:0,12,1326 +chrX 1200351 . T . . END=1200354 GT:DP:GQ:MIN_DP:PL 0/0:50:21:49:0,21,1430 +chrX 1200355 . C . . END=1200356 GT:DP:GQ:MIN_DP:PL 0/0:50:7:50:0,7,1310 +chrX 1200357 . T . . END=1200359 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 1200360 . G . . END=1200360 GT:DP:GQ:MIN_DP:PL 0/0:50:11:50:0,11,1359 +chrX 1200361 . T . . END=1200362 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 1200363 . T . . END=1200363 GT:DP:GQ:MIN_DP:PL 0/0:52:17:52:0,17,1439 +chrX 1200364 . A . . END=1200364 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 1200365 . A . . END=1200365 GT:DP:GQ:MIN_DP:PL 0/0:52:3:52:0,3,1370 +chrX 1200366 . A . . END=1200368 GT:DP:GQ:MIN_DP:PL 0/0:53:30:53:0,30,1514 +chrX 1200369 . T . . END=1200370 GT:DP:GQ:MIN_DP:PL 0/0:50:8:50:0,8,1375 +chrX 1200371 . T C, 2326.06 . AS_QUALapprox=|2340|0;AS_VarDP=0|52|0;DP=53;QUALapprox=2340;RAW_GT_COUNT=0,0,1;RAW_MQandDP=185957,53;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,52,0:52:99:0|1:1200319_G_A:2340,157,0,2340,157,2340:1200319:0,0,28,24 +chrX 1200372 . G A, 2281.06 . AS_QUALapprox=|2295|0;AS_VarDP=0|51|0;DP=52;QUALapprox=2295;RAW_GT_COUNT=0,0,1;RAW_MQandDP=182357,52;VarDP=51 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,51,0:51:99:0|1:1200319_G_A:2295,154,0,2295,154,2295:1200319:0,0,28,23 +chrX 1200373 . T . . END=1200376 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 1200377 . T . . END=1200377 GT:DP:GQ:MIN_DP:PL 0/0:52:17:52:0,17,1490 +chrX 1200378 . A . . END=1200378 GT:DP:GQ:MIN_DP:PL 0/0:51:24:51:0,24,1455 +chrX 1200379 . A . . END=1200381 GT:DP:GQ:MIN_DP:PL 0/0:51:14:51:0,14,1394 +chrX 1200382 . T . . END=1200384 GT:DP:GQ:MIN_DP:PL 0/0:53:20:53:0,20,1484 +chrX 1200385 . G . . END=1200385 GT:DP:GQ:MIN_DP:PL 0/0:51:14:51:0,14,1435 +chrX 1200386 . T . . END=1200398 GT:DP:GQ:MIN_DP:PL 0/0:53:20:52:0,20,1464 +chrX 1200399 . G . . END=1200399 GT:DP:GQ:MIN_DP:PL 0/0:50:11:50:0,11,1370 +chrX 1200400 . T . . END=1200404 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 1200405 . G A, 2416.06 . AS_QUALapprox=|2430|0;AS_VarDP=0|54|0;DP=55;QUALapprox=2430;RAW_GT_COUNT=0,0,1;RAW_MQandDP=193157,55;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,54,0:54:99:0|1:1200319_G_A:2430,163,0,2430,163,2430:1200319:0,0,31,23 +chrX 1200406 . T . . END=1200406 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 1200407 . G GT, 2461.03 . AS_QUALapprox=|2475|0;AS_VarDP=0|55|0;DP=56;QUALapprox=2475;RAW_GT_COUNT=0,0,1;RAW_MQandDP=196757,56;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,55,0:55:99:0|1:1200319_G_A:2475,166,0,2475,166,2475:1200319:0,0,32,23 +chrX 1200408 . T . . END=1200412 GT:DP:GQ:MIN_DP:PL 0/0:51:21:50:0,21,1380 +chrX 1200413 . A . . END=1200416 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,1215 +chrX 1200417 . T . . END=1200419 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,114,1710 +chrX 1200420 . G . . END=1200420 GT:DP:GQ:MIN_DP:PL 0/0:51:14:51:0,14,1354 +chrX 1200421 . T . . END=1200429 GT:DP:GQ:MIN_DP:PL 0/0:52:38:52:0,38,1450 +chrX 1200430 . G GTA, 2459.03 . AS_QUALapprox=|2473|0;AS_VarDP=0|57|0;DP=60;QUALapprox=2473;RAW_GT_COUNT=0,0,1;RAW_MQandDP=213076,60;VarDP=57 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,57,0:57:99:0|1:1200319_G_A:2473,171,0,2473,171,2473:1200319:0,0,30,27 +chrX 1200431 . T . . END=1200542 GT:DP:GQ:MIN_DP:PL 0/0:61:70:61:0,70,1638 +chrX 1200543 . T . . END=1200582 GT:DP:GQ:MIN_DP:PL 0/0:54:0:54:0,0,133 +chrX 1200583 . A G, 1191.06 . AS_QUALapprox=|1578|0;AS_VarDP=0|37|0;DP=55;QUALapprox=1578;RAW_GT_COUNT=0,0,1;RAW_MQandDP=191731,55;VarDP=37 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,37,0:37:99:0|1:1200583_A_G:1578,117,0,1428,112,1376:1200583:0,0,14,18 +chrX 1200584 . T . . END=1200591 GT:DP:GQ:MIN_DP:PL 0/0:55:0:55:0,0,162 +chrX 1200592 . T TGC, 1191.03 . AS_QUALapprox=|1578|0;AS_VarDP=0|37|0;DP=55;QUALapprox=1578;RAW_GT_COUNT=0,0,1;RAW_MQandDP=191731,55;VarDP=37 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,37,0:37:99:0|1:1200583_A_G:1578,117,0,1428,112,1376:1200583:0,0,14,18 +chrX 1200593 . G . . END=1200613 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,0 +chrX 1200614 . G A, 992.52 . AS_QUALapprox=|1128|0;AS_VarDP=0|27|0;DP=45;QUALapprox=1128;RAW_GT_COUNT=0,0,1;RAW_MQandDP=153412,45;VarDP=27 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,27,0:27:82:0|1:1200583_A_G:1128,87,0,1071,82,1053:1200583:0,0,10,12 +chrX 1200615 . T . . END=1200641 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,0 +chrX 1200642 . T . . END=1200650 GT:DP:GQ:MIN_DP:PL 0/0:37:30:36:0,30,450 +chrX 1200651 . GTGTGGGTATATATA G, 730.03 . AS_QUALapprox=|744|0;AS_VarDP=0|17|0;DP=46;QUALapprox=744;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158755,46;VarDP=17 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,17,0:17:40:0|1:1200583_A_G:744,40,0,757,54,771:1200583:0,0,9,8 +chrX 1200666 . T . . END=1200678 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,168 +chrX 1200679 . T . . END=1200679 GT:DP:GQ:MIN_DP:PL 0/0:17:48:17:0,48,720 +chrX 1200680 . G . . END=1200682 GT:DP:GQ:MIN_DP:PL 0/0:18:0:18:0,0,243 +chrX 1200683 . T . . END=1200683 GT:DP:GQ:MIN_DP:PL 0/0:20:57:20:0,57,855 +chrX 1200684 . G . . END=1200684 GT:DP:GQ:MIN_DP:PL 0/0:20:0:20:0,0,328 +chrX 1200685 . T . . END=1200686 GT:DP:GQ:MIN_DP:PL 0/0:21:60:21:0,60,645 +chrX 1200687 . T . . END=1200688 GT:DP:GQ:MIN_DP:PL 0/0:26:0:26:0,0,344 +chrX 1200689 . T . . END=1200689 GT:DP:GQ:MIN_DP:PL 0/0:28:78:28:0,78,1170 +chrX 1200690 . G . . END=1200690 GT:DP:GQ:MIN_DP:PL 0/0:29:0:29:0,0,352 +chrX 1200691 . T . . END=1200694 GT:DP:GQ:MIN_DP:PL 0/0:29:81:29:0,81,1215 +chrX 1200695 . T . . END=1200695 GT:DP:GQ:MIN_DP:PL 0/0:29:0:29:0,0,362 +chrX 1200696 . G . . END=1200696 GT:DP:GQ:MIN_DP:PL 0/0:28:81:28:0,81,1215 +chrX 1200697 . T . . END=1200700 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,387 +chrX 1200701 . T C, 931.04 . AS_QUALapprox=|945|0;AS_VarDP=1|22|0;BaseQRankSum=-0.445;DP=23;MQRankSum=0.000;QUALapprox=945;RAW_GT_COUNT=0,0,1;RAW_MQandDP=81801,23;ReadPosRankSum=0.413;VarDP=23 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:1,22,0:23:24:0|1:1200701_T_C:945,24,0,948,66,990:1200701:1,0,12,10 +chrX 1200702 . G . . END=1200722 GT:DP:GQ:MIN_DP:PL 0/0:25:61:25:0,61,725 +chrX 1200723 . G A, 1229.06 . AS_QUALapprox=|1243|0;AS_VarDP=1|30|0;BaseQRankSum=1.491;DP=31;MQRankSum=-0.131;QUALapprox=1243;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108522,31;ReadPosRankSum=0.000;VarDP=31 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:1,30,0:31:48:0|1:1200701_T_C:1243,48,0,1246,90,1288:1200701:1,0,13,17 +chrX 1200724 . T . . END=1200741 GT:DP:GQ:MIN_DP:PL 0/0:32:78:32:0,78,874 +chrX 1200742 . G T, 1630.06 . AS_QUALapprox=|1644|0;AS_VarDP=1|43|0;BaseQRankSum=-0.410;DP=44;MQRankSum=-0.447;QUALapprox=1644;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147359,44;ReadPosRankSum=-1.143;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:1,43,0:44:86:0|1:1200701_T_C:1644,86,0,1647,128,1689:1200701:1,0,20,23 +chrX 1200743 . A . . END=1200798 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,105,1156 +chrX 1200799 . A ATGTGTATATATATGTGTATATAAGCTGTGTATCTATATGTGTGTATATGCG, 3651.03 . AS_QUALapprox=|3665|0;AS_VarDP=1|83|0;BaseQRankSum=0.646;DP=89;MQRankSum=-0.507;QUALapprox=3665;RAW_GT_COUNT=0,0,1;RAW_MQandDP=295972,89;ReadPosRankSum=0.334;VarDP=84 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:1,83,0:84:99:0|1:1200799_A_ATGTGTATATATATGTGTATATAAGCTGTGTATCTATATGTGTGTATATGCG:3665,206,0,3669,250,3714:1200799:1,0,39,44 +chrX 1200800 . T . . END=1200841 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1200842 . CAT C, 2619.03 . AS_QUALapprox=|2633|0;AS_VarDP=0|60|0;DP=60;QUALapprox=2633;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208328,60;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,60,0:60:99:0|1:1200799_A_ATGTGTATATATATGTGTATATAAGCTGTGTATCTATATGTGTGTATATGCG:2633,181,0,2633,181,2633:1200799:0,0,35,25 +chrX 1200845 . A . . END=1200876 GT:DP:GQ:MIN_DP:PL 0/0:77:0:77:0,0,933 +chrX 1200877 . A . . END=1200879 GT:DP:GQ:MIN_DP:PL 0/0:78:99:78:0,120,1800 +chrX 1200880 . T . . END=1200880 GT:DP:GQ:MIN_DP:PL 0/0:76:0:76:0,0,1707 +chrX 1200881 . A . . END=1200881 GT:DP:GQ:MIN_DP:PL 0/0:79:99:79:0,120,1800 +chrX 1200882 . T . . END=1200883 GT:DP:GQ:MIN_DP:PL 0/0:76:0:76:0,0,1787 +chrX 1200884 . G . . END=1200884 GT:DP:GQ:MIN_DP:PL 0/0:78:99:78:0,120,1800 +chrX 1200885 . G . . END=1200887 GT:DP:GQ:MIN_DP:PL 0/0:73:0:73:0,0,1777 +chrX 1200888 . G . . END=1200888 GT:DP:GQ:MIN_DP:PL 0/0:77:99:77:0,120,1800 +chrX 1200889 . A . . END=1200895 GT:DP:GQ:MIN_DP:PL 0/0:69:0:69:0,0,1857 +chrX 1200896 . G . . END=1200897 GT:DP:GQ:MIN_DP:PL 0/0:73:99:73:0,120,1800 +chrX 1200898 . C . . END=1200899 GT:DP:GQ:MIN_DP:PL 0/0:72:0:72:0,0,1885 +chrX 1200900 . T . . END=1200900 GT:DP:GQ:MIN_DP:PL 0/0:71:40:71:0,40,2010 +chrX 1200901 . G . . END=1200901 GT:DP:GQ:MIN_DP:PL 0/0:69:0:69:0,0,1871 +chrX 1200902 . C . . END=1200903 GT:DP:GQ:MIN_DP:PL 0/0:67:25:66:0,25,1847 +chrX 1200904 . T . . END=1200904 GT:DP:GQ:MIN_DP:PL 0/0:68:6:68:0,6,1806 +chrX 1200905 . T . . END=1200935 GT:DP:GQ:MIN_DP:PL 0/0:64:62:64:0,62,1800 +chrX 1200936 . G T, 1951.06 . AS_QUALapprox=|1965|0;AS_VarDP=0|60|0;DP=61;QUALapprox=1965;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:1965,180,0,1965,180,1965:0,0,33,27 +chrX 1200937 . C . . END=1201006 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 1201007 . T C, 2765.06 . AS_QUALapprox=|2779|0;AS_VarDP=0|65|0;DP=65;QUALapprox=2779;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=65 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,65,0:65:99:0|1:1201007_T_C:2779,195,0,2779,195,2779:1201007:0,0,31,34 +chrX 1201008 . G . . END=1201015 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1201016 . T C, 2619.06 . AS_QUALapprox=|2633|0;AS_VarDP=0|60|0;DP=60;QUALapprox=2633;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,60,0:60:99:0|1:1201007_T_C:2633,180,0,2633,180,2633:1201007:0,0,30,30 +chrX 1201017 . C . . END=1201051 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1201052 . C G, 2821.06 . AS_QUALapprox=|2835|0;AS_VarDP=0|64|0;DP=64;QUALapprox=2835;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=64 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,64,0:64:99:0|1:1201052_C_G:2835,193,0,2835,193,2835:1201052:0,0,27,37 +chrX 1201053 . C . . END=1201062 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1201063 . T C, 2752.06 . AS_QUALapprox=|2766|0;AS_VarDP=0|63|0;DP=63;QUALapprox=2766;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=63 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,63,0:63:99:0|1:1201052_C_G:2766,189,0,2766,189,2766:1201052:0,0,27,36 +chrX 1201064 . G . . END=1201095 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1201096 . T C, 1880.06 . AS_QUALapprox=|1894|0;AS_VarDP=0|61|0;DP=62;QUALapprox=1894;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=61 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:1894,181,0,1894,181,1894:0,0,27,34 +chrX 1201097 . G . . END=1201149 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 1201150 . G A, 1997.06 . AS_QUALapprox=|2011|0;AS_VarDP=0|59|0;DP=61;QUALapprox=2011;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:2011,177,0,2011,177,2011:0,0,26,33 +chrX 1201151 . T . . END=1201216 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1201217 . G A, 2457.06 . AS_QUALapprox=|2471|0;AS_VarDP=0|59|0;DP=60;QUALapprox=2471;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=59 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,59,0:59:99:0|1:1201217_G_A:2471,178,0,2471,178,2471:1201217:0,0,31,28 +chrX 1201218 . T . . END=1201241 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1201242 . C A, 2291.06 . AS_QUALapprox=|2305|0;AS_VarDP=0|55|0;DP=57;QUALapprox=2305;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,55,0:55:99:0|1:1201217_G_A:2305,165,0,2305,165,2305:1201217:0,0,32,23 +chrX 1201243 . A . . END=1201276 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 1201277 . C CCTGTGTGTGT, 2407.03 . AS_QUALapprox=|2421|0;AS_VarDP=0|55|0;DP=61;QUALapprox=2421;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219136,61;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,55,0:55:99:0|1:1201277_C_CCTGTGTGTGT:2421,165,0,2422,165,2423:1201277:0,0,27,28 +chrX 1201278 . C . . END=1201316 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 1201317 . C T, 2731.06 . AS_QUALapprox=|2745|0;AS_VarDP=0|61|0;DP=63;QUALapprox=2745;RAW_GT_COUNT=0,0,1;RAW_MQandDP=221522,63;VarDP=61 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,61,0:61:99:0|1:1201277_C_CCTGTGTGTGT:2745,183,0,2745,184,2745:1201277:0,0,28,33 +chrX 1201318 . C . . END=1201339 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1201340 . C CTGTG, 2756.03 . AS_QUALapprox=|2770|0;AS_VarDP=0|62|0;DP=62;QUALapprox=2770;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=62 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,62,0:62:99:0|1:1201277_C_CCTGTGTGTGT:2770,187,0,2770,187,2770:1201277:0,0,27,35 +chrX 1201341 . T . . END=1201383 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 1201384 . G A, 2095.06 . AS_QUALapprox=|2109|0;AS_VarDP=0|51|0;DP=52;QUALapprox=2109;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=51 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,51,0:51:99:0|1:1201277_C_CCTGTGTGTGT:2109,153,0,2109,153,2109:1201277:0,0,21,30 +chrX 1201385 . T . . END=1201449 GT:DP:GQ:MIN_DP:PL 0/0:51:40:51:0,40,1340 +chrX 1201450 . C . . END=1201450 GT:DP:GQ:MIN_DP:PL 0/0:47:12:47:0,12,1306 +chrX 1201451 . A . . END=1201455 GT:DP:GQ:MIN_DP:PL 0/0:50:21:50:0,21,1339 +chrX 1201456 . T . . END=1201456 GT:DP:GQ:MIN_DP:PL 0/0:50:3:50:0,3,1312 +chrX 1201457 . G . . END=1201480 GT:DP:GQ:MIN_DP:PL 0/0:48:37:47:0,37,1294 +chrX 1201481 . TAGAG T, 1843.03 . AS_QUALapprox=|1857|0;AS_VarDP=0|42|0;DP=43;QUALapprox=1857;RAW_GT_COUNT=0,0,1;RAW_MQandDP=146372,43;VarDP=42 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,42,0:42:99:0|1:1201481_TAGAG_T:1857,126,0,1857,126,1858:1201481:0,0,20,22 +chrX 1201486 . A . . END=1201525 GT:DP:GQ:MIN_DP:PL 0/0:37:57:37:0,57,855 +chrX 1201526 . G GAGACAGATGATACATAGATAGATGATAGAGAGAT, 2069.03 . AS_QUALapprox=|2083|0;AS_VarDP=0|47|0;DP=48;QUALapprox=2083;RAW_GT_COUNT=0,0,1;RAW_MQandDP=155130,48;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,47,0:47:99:0|1:1201481_TAGAG_T:2083,141,0,2083,141,2084:1201481:0,0,25,22 +chrX 1201527 . A . . END=1201648 GT:DP:GQ:MIN_DP:PL 0/0:36:79:36:0,79,978 +chrX 1201649 . T TTAGA, 2145.03 . AS_QUALapprox=|2159|0;AS_VarDP=0|49|0;DP=55;QUALapprox=2159;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:2159,147,0,2159,147,2159:0,0,30,19 +chrX 1201650 . T . . END=1201657 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 1201658 . G . . END=1201658 GT:DP:GQ:MIN_DP:PL 0/0:54:0:54:0,0,1449 +chrX 1201659 . A . . END=1201797 GT:DP:GQ:MIN_DP:PL 0/0:53:53:53:0,53,1286 +chrX 1201798 . GGGTA G, 2281.03 . AS_QUALapprox=|2295|0;AS_VarDP=1|52|0;BaseQRankSum=1.822;DP=56;MQRankSum=0.000;QUALapprox=2295;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;ReadPosRankSum=0.360;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:1,52,0:53:99:2295,115,0,2298,157,2340:0,1,26,26 +chrX 1201803 . G . . END=1202026 GT:DP:GQ:MIN_DP:PL 0/0:54:89:54:0,89,1369 +chrX 1202027 . G A, 1599.06 . AS_QUALapprox=|1613|0;AS_VarDP=0|49|0;DP=49;QUALapprox=1613;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1613,147,0,1613,147,1613:0,0,21,28 +chrX 1202028 . G . . END=1202646 GT:DP:GQ:MIN_DP:PL 0/0:60:88:60:0,88,1300 +chrX 1202647 . GT G, 1914.03 . AS_QUALapprox=|1928|0;AS_VarDP=0|49|0;DP=49;QUALapprox=1928;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1928,147,0,1928,147,1928:0,0,23,26 +chrX 1202649 . G . . END=1202857 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,106,1475 +chrX 1202858 . A G, 1375.06 . AS_QUALapprox=|1389|0;AS_VarDP=0|40|0;DP=44;QUALapprox=1389;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158400,44;VarDP=40 GT:AD:DP:GQ:PL:SB 1/1:0,40,0:40:99:1389,120,0,1389,120,1389:0,0,22,18 +chrX 1202859 . G . . END=1203094 GT:DP:GQ:MIN_DP:PL 0/0:42:41:42:0,41,1076 +chrX 1203095 . CAAA C, 508.60 . AS_QUALapprox=|516|0;AS_VarDP=5|15|0;BaseQRankSum=0.000;DP=45;MQRankSum=-0.755;QUALapprox=516;RAW_GT_COUNT=0,1,0;RAW_MQandDP=155316,45;ReadPosRankSum=-0.869;VarDP=20 GT:AD:DP:GQ:PL:SB 0/1:5,15,0:20:35:516,0,35,532,80,613:1,4,14,1 +chrX 1203099 . A . . END=1203245 GT:DP:GQ:MIN_DP:PL 0/0:48:31:40:0,31,1082 +chrX 1203246 . T C, 1662.06 . AS_QUALapprox=|1676|0;AS_VarDP=0|56|0;DP=58;QUALapprox=1676;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1676,167,0,1676,167,1676:0,0,31,25 +chrX 1203247 . G . . END=1203650 GT:DP:GQ:MIN_DP:PL 0/0:58:64:58:0,64,1310 +chrX 1203651 . C T, 2288.06 . AS_QUALapprox=|2302|0;AS_VarDP=0|52|0;DP=52;QUALapprox=2302;RAW_GT_COUNT=0,0,1;RAW_MQandDP=148362,52;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,52,0:52:99:0|1:1203651_C_T:2302,156,0,2302,156,2302:1203651:0,0,27,25 +chrX 1203652 . A G, 2288.06 . AS_QUALapprox=|2302|0;AS_VarDP=0|52|0;DP=53;QUALapprox=2302;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151962,53;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,52,0:52:99:0|1:1203651_C_T:2302,156,0,2302,156,2302:1203651:0,0,27,25 +chrX 1203653 . C . . END=1203727 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 1203728 . A C, 2024.06 . AS_QUALapprox=|2038|0;AS_VarDP=0|64|0;DP=65;QUALapprox=2038;RAW_GT_COUNT=0,0,1;RAW_MQandDP=231696,65;VarDP=64 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:2038,191,0,2038,191,2038:0,0,32,32 +chrX 1203729 . A . . END=1203937 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,116,1662 +chrX 1203938 . C A, 1549.06 . AS_QUALapprox=|1563|0;AS_VarDP=0|48|0;DP=54;QUALapprox=1563;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=48 GT:AD:DP:GQ:PL:SB 1/1:0,48,0:48:99:1563,144,0,1563,144,1563:0,0,20,28 +chrX 1203939 . C . . END=1204073 GT:DP:GQ:MIN_DP:PL 0/0:47:77:47:0,77,1224 +chrX 1204074 . C G, 1561.06 . AS_QUALapprox=|1575|0;AS_VarDP=0|38|0;DP=38;QUALapprox=1575;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;VarDP=38 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,38,0:38:99:0|1:1204074_C_G:1575,114,0,1575,114,1575:1204074:0,0,20,18 +chrX 1204075 . A . . END=1204095 GT:DP:GQ:MIN_DP:PL 0/0:34:61:34:0,61,945 +chrX 1204096 . A AAAAAAAAAAAG, 1618.03 . AS_QUALapprox=|1632|0;AS_VarDP=0|37|0;DP=38;QUALapprox=1632;RAW_GT_COUNT=0,0,1;RAW_MQandDP=135017,38;VarDP=37 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,37,0:37:99:0|1:1204074_C_G:1632,111,0,1632,111,1632:1204074:0,0,24,13 +chrX 1204097 . A . . END=1204149 GT:DP:GQ:MIN_DP:PL 0/0:31:29:29:0,29,819 +chrX 1204150 . C CTGTGTG,CTGTGTGTGTGTGTGTGTG, 1466.02 . AS_QUALapprox=|810|998|0;AS_VarDP=0|13|17|0;DP=44;QUALapprox=1483;RAW_GT_COUNT=0,0,1;RAW_MQandDP=156617,44;VarDP=30 GT:AD:DP:GQ:PL:SB 1/2:0,13,17,0:30:99:1483,727,673,553,0,485,1383,728,553,1367:0,0,15,15 +chrX 1204151 . T . . END=1204181 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,102,1395 +chrX 1204182 . A . . END=1204183 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,1007 +chrX 1204184 . G . . END=1204184 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,114,1710 +chrX 1204185 . C . . END=1204187 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,958 +chrX 1204188 . G . . END=1204188 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,109,1296 +chrX 1204189 . G . . END=1204196 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,1007 +chrX 1204197 . G . . END=1204780 GT:DP:GQ:MIN_DP:PL 0/0:46:22:43:0,22,1141 +chrX 1204781 . T C, 35.64 . AS_QUALapprox=|43|0;AS_VarDP=47|5|0;BaseQRankSum=-1.755;DP=54;MQRankSum=-4.568;QUALapprox=43;RAW_GT_COUNT=0,1,0;RAW_MQandDP=182684,54;ReadPosRankSum=0.062;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:47,5,0:52:43:0|1:1204781_T_C:43,0,1948,185,1963,2148:1204781:25,22,3,2 +chrX 1204782 . C . . END=1204787 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 1204788 . A T, 29.64 . AS_QUALapprox=|37|0;AS_VarDP=49|5|0;BaseQRankSum=-3.256;DP=55;MQRankSum=-4.666;QUALapprox=37;RAW_GT_COUNT=0,1,0;RAW_MQandDP=186284,55;ReadPosRankSum=-0.528;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:49,5,0:54:37:0|1:1204781_T_C:37,0,2022,185,2037,2221:1204781:26,23,3,2 +chrX 1204789 . A . . END=1204791 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 1204792 . A G, 32.64 . AS_QUALapprox=|40|0;AS_VarDP=48|5|0;BaseQRankSum=-3.127;DP=55;MQRankSum=-4.617;QUALapprox=40;RAW_GT_COUNT=0,1,0;RAW_MQandDP=186284,55;ReadPosRankSum=-0.868;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:48,5,0:53:40:0|1:1204781_T_C:40,0,1990,185,2005,2190:1204781:25,23,3,2 +chrX 1204793 . C . . END=1204793 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 1204794 . C T, 1853.06 . AS_QUALapprox=|1867|0;AS_VarDP=0|54|0;DP=55;QUALapprox=1867;RAW_GT_COUNT=0,0,1;RAW_MQandDP=186284,55;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,54,0:54:99:0|1:1204781_T_C:1867,162,0,1867,162,1867:1204781:0,0,28,26 +chrX 1204795 . G . . END=1207499 GT:DP:GQ:MIN_DP:PL 0/0:39:28:32:0,28,765 +chrX 1207500 . CA C, 3.69 . AS_QUALapprox=|11|0;AS_VarDP=23|5|0;BaseQRankSum=-1.192;DP=37;MQRankSum=1.431;QUALapprox=11;RAW_GT_COUNT=0,1,0;RAW_MQandDP=111973,37;ReadPosRankSum=0.540;VarDP=28 GT:AD:DP:GQ:PL:SB 0/1:23,5,0:28:11:11,0,608,79,622,702:11,12,1,4 +chrX 1207501 . AC A,*, 47.47 . AS_QUALapprox=|137|0|0;AS_VarDP=6|3|5|0;BaseQRankSum=0.693;DP=37;MQRankSum=0.792;QUALapprox=137;RAW_GT_COUNT=0,1,0;RAW_MQandDP=111973,37;ReadPosRankSum=-0.315;VarDP=14 GT:AD:DP:GQ:PL:SB 0/1:6,3,5,0:14:19:137,0,133,19,79,550,160,187,385,480:1,5,1,7 +chrX 1207503 . C . . END=1207504 GT:DP:GQ:MIN_DP:PL 0/0:39:48:39:0,48,720 +chrX 1207505 . C . . END=1207505 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,780 +chrX 1207506 . C . . END=1207507 GT:DP:GQ:MIN_DP:PL 0/0:34:46:34:0,46,720 +chrX 1207508 . C . . END=1207508 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,919 +chrX 1207509 . C . . END=1207511 GT:DP:GQ:MIN_DP:PL 0/0:32:20:29:0,20,754 +chrX 1207512 . C . . END=1207512 GT:DP:GQ:MIN_DP:PL 0/0:29:13:29:0,13,749 +chrX 1207513 . C . . END=1207513 GT:DP:GQ:MIN_DP:PL 0/0:28:48:28:0,48,720 +chrX 1207514 . T . . END=1207514 GT:DP:GQ:MIN_DP:PL 0/0:29:0:29:0,0,541 +chrX 1207515 . C . . END=1207515 GT:DP:GQ:MIN_DP:PL 0/0:29:60:29:0,60,900 +chrX 1207516 . A . . END=1207517 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,710 +chrX 1207518 . C . . END=1207519 GT:DP:GQ:MIN_DP:PL 0/0:33:36:32:0,36,933 +chrX 1207520 . T . . END=1207520 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,779 +chrX 1207521 . C . . END=1209343 GT:DP:GQ:MIN_DP:PL 0/0:50:25:32:0,25,898 +chrX 1209344 . T . . END=1209344 GT:DP:GQ:MIN_DP:PL 0/0:52:17:52:0,17,1429 +chrX 1209345 . T . . END=1210110 GT:DP:GQ:MIN_DP:PL 0/0:45:21:43:0,21,855 +chrX 1210111 . A AAAAAG, 308.60 . AS_QUALapprox=|316|0;AS_VarDP=20|13|0;BaseQRankSum=1.814;DP=42;MQRankSum=1.478;QUALapprox=316;RAW_GT_COUNT=0,1,0;RAW_MQandDP=146736,42;ReadPosRankSum=0.774;VarDP=33 GT:AD:DP:GQ:PL:SB 0/1:20,13,0:33:99:316,0,719,376,758,1134:11,9,6,7 +chrX 1210112 . A . . END=1210114 GT:DP:GQ:MIN_DP:PL 0/0:37:69:37:0,69,1035 +chrX 1210115 . AGAAAAG A, 597.60 . AS_QUALapprox=|605|0;AS_VarDP=24|18|0;BaseQRankSum=0.962;DP=43;MQRankSum=-2.021;QUALapprox=605;RAW_GT_COUNT=0,1,0;RAW_MQandDP=150336,43;ReadPosRankSum=-1.014;VarDP=42 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,18,0:42:99:0|1:1210115_AGAAAAG_A:605,0,942,677,996,1673:1210115:15,9,10,8 +chrX 1210122 . A . . END=1210125 GT:DP:GQ:MIN_DP:PL 0/0:41:84:41:0,84,1260 +chrX 1210126 . G A, 572.64 . AS_QUALapprox=|580|0;AS_VarDP=25|17|0;BaseQRankSum=0.169;DP=45;MQRankSum=-2.124;QUALapprox=580;RAW_GT_COUNT=0,1,0;RAW_MQandDP=157536,45;ReadPosRankSum=-0.436;VarDP=42 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,17,0:42:99:0|1:1210115_AGAAAAG_A:580,0,976,655,1028,1683:1210115:16,9,9,8 +chrX 1210127 . A . . END=1210149 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,104,1553 +chrX 1210150 . T . . END=1210150 GT:DP:GQ:MIN_DP:PL 0/0:56:0:56:0,0,1261 +chrX 1210151 . G . . END=1210151 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 1210152 . G . . END=1210152 GT:DP:GQ:MIN_DP:PL 0/0:56:0:56:0,0,1510 +chrX 1210153 . G . . END=1210237 GT:DP:GQ:MIN_DP:PL 0/0:61:26:55:0,26,1468 +chrX 1210238 . T C, 1216.64 . AS_QUALapprox=|1224|0;AS_VarDP=40|33|0;BaseQRankSum=0.644;DP=74;MQRankSum=0.000;QUALapprox=1224;RAW_GT_COUNT=0,1,0;RAW_MQandDP=266400,74;ReadPosRankSum=-0.144;VarDP=73 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:40,33,0:73:99:0|1:1210238_T_C:1224,0,1570,1344,1669,3014:1210238:21,19,18,15 +chrX 1210239 . A . . END=1210248 GT:DP:GQ:MIN_DP:PL 0/0:73:99:73:0,120,1800 +chrX 1210249 . A G, 1291.64 . AS_QUALapprox=|1299|0;AS_VarDP=43|35|0;BaseQRankSum=-1.779;DP=78;MQRankSum=0.000;QUALapprox=1299;RAW_GT_COUNT=0,1,0;RAW_MQandDP=280800,78;ReadPosRankSum=0.300;VarDP=78 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:43,35,0:78:99:0|1:1210238_T_C:1299,0,1689,1428,1795,3223:1210238:24,19,19,16 +chrX 1210250 . G . . END=1210270 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,120,1800 +chrX 1210271 . A G, 1256.64 . AS_QUALapprox=|1264|0;AS_VarDP=41|34|0;BaseQRankSum=1.624;DP=78;MQRankSum=0.000;QUALapprox=1264;RAW_GT_COUNT=0,1,0;RAW_MQandDP=280800,78;ReadPosRankSum=-0.673;VarDP=75 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:41,34,0:75:99:0|1:1210238_T_C:1264,0,1533,1387,1635,3022:1210238:23,18,20,14 +chrX 1210272 . A . . END=1210380 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1210381 . C T, 837.64 . AS_QUALapprox=|845|0;AS_VarDP=30|31|0;BaseQRankSum=1.055;DP=64;MQRankSum=0.000;QUALapprox=845;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=1.487;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:30,31,0:61:99:845,0,765,934,858,1792:15,15,17,14 +chrX 1210382 . C . . END=1210750 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,105,1510 +chrX 1210751 . G A, 683.64 . AS_QUALapprox=|691|0;AS_VarDP=24|26|0;BaseQRankSum=-0.948;DP=51;MQRankSum=0.000;QUALapprox=691;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-1.827;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:24,26,0:50:99:691,0,652,763,730,1493:11,13,12,14 +chrX 1210752 . A . . END=1210801 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,117,1755 +chrX 1210802 . A G, 558.64 . AS_QUALapprox=|566|0;AS_VarDP=27|21|0;BaseQRankSum=0.235;DP=54;MQRankSum=0.000;QUALapprox=566;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=1.809;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:27,21,0:48:99:566,0,749,647,812,1459:13,14,9,12 +chrX 1210803 . G . . END=1211138 GT:DP:GQ:MIN_DP:PL 0/0:54:42:54:0,42,1250 +chrX 1211139 . A G, 884.64 . AS_QUALapprox=|892|0;AS_VarDP=18|24|0;BaseQRankSum=0.845;DP=42;MQRankSum=0.000;QUALapprox=892;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151200,42;ReadPosRankSum=-0.082;VarDP=42 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:18,24,0:42:99:0|1:1211139_A_G:892,0,632,946,705,1650:1211139:12,6,11,13 +chrX 1211140 . A . . END=1211165 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,100,1161 +chrX 1211166 . TG T, 1005.60 . AS_QUALapprox=|1013|0;AS_VarDP=20|26|0;BaseQRankSum=-0.091;DP=46;MQRankSum=0.000;QUALapprox=1013;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=0.917;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:20,26,0:46:99:0|1:1211139_A_G:1013,0,762,1073,840,1913:1211139:13,7,12,14 +chrX 1211168 . A . . END=1211168 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,108,1620 +chrX 1211169 . ATGG A, 1002.60 . AS_QUALapprox=|1010|0;AS_VarDP=21|26|0;BaseQRankSum=-1.390;DP=50;MQRankSum=0.000;QUALapprox=1010;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=0.565;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,26,0:47:99:0|1:1211139_A_G:1010,0,793,1073,871,1945:1211139:13,8,12,14 +chrX 1211173 . A . . END=1211256 GT:DP:GQ:MIN_DP:PL 0/0:48:39:44:0,39,1010 +chrX 1211257 . G GTGGA, 665.60 . AS_QUALapprox=|673|0;AS_VarDP=20|18|0;BaseQRankSum=0.259;DP=54;MQRankSum=0.000;QUALapprox=673;RAW_GT_COUNT=0,1,0;RAW_MQandDP=171697,54;ReadPosRankSum=0.337;VarDP=38 GT:AD:DP:GQ:PL:SB 0/1:20,18,0:38:99:673,0,761,734,816,1550:9,11,5,13 +chrX 1211258 . T . . END=1211355 GT:DP:GQ:MIN_DP:PL 0/0:58:44:58:0,44,1240 +chrX 1211356 . G . . END=1211357 GT:DP:GQ:MIN_DP:PL 0/0:56:0:56:0,0,1265 +chrX 1211358 . T . . END=1211360 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,99,1485 +chrX 1211361 . A . . END=1211361 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,0 +chrX 1211362 . T . . END=1211402 GT:DP:GQ:MIN_DP:PL 0/0:50:67:50:0,67,1200 +chrX 1211403 . A . . END=1211405 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,918 +chrX 1211406 . T . . END=1211412 GT:DP:GQ:MIN_DP:PL 0/0:40:32:39:0,32,924 +chrX 1211413 . A . . END=1211414 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,785 +chrX 1211415 . G . . END=1211468 GT:DP:GQ:MIN_DP:PL 0/0:35:25:28:0,25,630 +chrX 1211469 . G . . END=1211469 GT:DP:GQ:MIN_DP:PL 0/0:18:19:18:0,19,526 +chrX 1211470 . T . . END=1211494 GT:DP:GQ:MIN_DP:PL 0/0:18:30:18:0,30,397 +chrX 1211495 . A . . END=1211496 GT:DP:GQ:MIN_DP:PL 0/0:13:0:13:0,0,302 +chrX 1211497 . G . . END=1211502 GT:DP:GQ:MIN_DP:PL 0/0:12:30:12:0,30,328 +chrX 1211503 . A . . END=1211506 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,282 +chrX 1211507 . G . . END=1211513 GT:DP:GQ:MIN_DP:PL 0/0:15:20:14:0,20,442 +chrX 1211514 . T . . END=1211514 GT:DP:GQ:MIN_DP:PL 0/0:17:16:17:0,16,501 +chrX 1211515 . G . . END=1211515 GT:DP:GQ:MIN_DP:PL 0/0:17:45:17:0,45,675 +chrX 1211516 . A . . END=1211516 GT:DP:GQ:MIN_DP:PL 0/0:15:6:15:0,6,362 +chrX 1211517 . A . . END=1211519 GT:DP:GQ:MIN_DP:PL 0/0:16:45:16:0,45,675 +chrX 1211520 . C . . END=1211520 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,397 +chrX 1211521 . A . . END=1211521 GT:DP:GQ:MIN_DP:PL 0/0:17:26:17:0,26,501 +chrX 1211522 . T . . END=1211522 GT:DP:GQ:MIN_DP:PL 0/0:17:16:17:0,16,501 +chrX 1211523 . G . . END=1211535 GT:DP:GQ:MIN_DP:PL 0/0:16:34:16:0,34,477 +chrX 1211536 . T . . END=1211536 GT:DP:GQ:MIN_DP:PL 0/0:16:19:16:0,19,397 +chrX 1211537 . A . . END=1211744 GT:DP:GQ:MIN_DP:PL 0/0:24:23:20:0,23,522 +chrX 1211745 . A . . END=1211745 GT:DP:GQ:MIN_DP:PL 0/0:19:0:19:0,0,522 +chrX 1211746 . T . . END=1211746 GT:DP:GQ:MIN_DP:PL 0/0:16:36:16:0,36,540 +chrX 1211747 . A . . END=1211748 GT:DP:GQ:MIN_DP:PL 0/0:15:0:15:0,0,243 +chrX 1211749 . G . . END=1211759 GT:DP:GQ:MIN_DP:PL 0/0:16:20:15:0,20,360 +chrX 1211760 . T . . END=1211760 GT:DP:GQ:MIN_DP:PL 0/0:14:17:14:0,17,397 +chrX 1211761 . G . . END=1211778 GT:DP:GQ:MIN_DP:PL 0/0:16:36:15:0,36,366 +chrX 1211779 . A . . END=1211779 GT:DP:GQ:MIN_DP:PL 0/0:18:19:18:0,19,526 +chrX 1211780 . G . . END=1211780 GT:DP:GQ:MIN_DP:PL 0/0:17:26:17:0,26,511 +chrX 1211781 . A . . END=1211781 GT:DP:GQ:MIN_DP:PL 0/0:18:19:18:0,19,495 +chrX 1211782 . T . . END=1211782 GT:DP:GQ:MIN_DP:PL 0/0:19:22:19:0,22,540 +chrX 1211783 . G . . END=1211783 GT:DP:GQ:MIN_DP:PL 0/0:20:11:20:0,11,557 +chrX 1211784 . G . . END=1211874 GT:DP:GQ:MIN_DP:PL 0/0:24:21:21:0,21,595 +chrX 1211875 . A . . END=1211875 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1208 +chrX 1211876 . G . . END=1211994 GT:DP:GQ:MIN_DP:PL 0/0:50:77:50:0,77,981 +chrX 1211995 . C A, 839.06 . AS_QUALapprox=|853|0;AS_VarDP=0|28|0;DP=40;QUALapprox=853;RAW_GT_COUNT=0,0,1;RAW_MQandDP=144000,40;VarDP=28 GT:AD:DP:GQ:PL:SB 1/1:0,28,0:28:83:853,83,0,853,83,853:0,0,14,14 +chrX 1211996 . T . . END=1212251 GT:DP:GQ:MIN_DP:PL 0/0:53:30:47:0,30,1035 +chrX 1212252 . G A, 616.64 . AS_QUALapprox=|624|0;AS_VarDP=29|23|0;BaseQRankSum=0.964;DP=52;MQRankSum=0.000;QUALapprox=624;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=-0.498;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:29,23,0:52:99:624,0,772,710,841,1552:17,12,13,10 +chrX 1212253 . A . . END=1212288 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 1212289 . C T, 721.64 . AS_QUALapprox=|729|0;AS_VarDP=29|26|0;BaseQRankSum=2.828;DP=55;MQRankSum=0.000;QUALapprox=729;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=0.413;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:29,26,0:55:99:729,0,728,816,806,1622:16,13,14,12 +chrX 1212290 . A . . END=1212415 GT:DP:GQ:MIN_DP:PL 0/0:50:98:50:0,98,1298 +chrX 1212416 . C CAG, 1129.60 . AS_QUALapprox=|1137|0;AS_VarDP=18|29|0;BaseQRankSum=0.501;DP=49;MQRankSum=-0.744;QUALapprox=1137;RAW_GT_COUNT=0,1,0;RAW_MQandDP=175716,49;ReadPosRankSum=1.391;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:18,29,0:47:99:0|1:1212416_C_CAG:1137,0,668,1191,756,1947:1212416:8,10,15,14 +chrX 1212417 . G . . END=1212417 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,108,1620 +chrX 1212418 . GAAAAA G, 1093.60 . AS_QUALapprox=|1101|0;AS_VarDP=30|29|0;BaseQRankSum=0.150;DP=61;MQRankSum=-0.983;QUALapprox=1101;RAW_GT_COUNT=0,1,0;RAW_MQandDP=218916,61;ReadPosRankSum=1.762;VarDP=59 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:30,29,0:59:99:0|1:1212416_C_CAG:1101,0,1133,1191,1220,2412:1212416:11,19,15,14 +chrX 1212424 . A . . END=1212805 GT:DP:GQ:MIN_DP:PL 0/0:56:74:56:0,74,1414 +chrX 1212806 . A AACACACAC, 790.60 . AS_QUALapprox=|798|0;AS_VarDP=14|21|0;BaseQRankSum=0.436;DP=51;MQRankSum=-1.130;QUALapprox=798;RAW_GT_COUNT=0,1,0;RAW_MQandDP=179764,51;ReadPosRankSum=-0.758;VarDP=35 GT:AD:DP:GQ:PL:SB 0/1:14,21,0:35:99:798,0,525,841,589,1430:5,9,9,12 +chrX 1212807 . A . . END=1212839 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,111,1665 +chrX 1212840 . A . . END=1212841 GT:DP:GQ:MIN_DP:PL 0/0:50:0:50:0,0,962 +chrX 1212842 . C . . END=1212843 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,108,1549 +chrX 1212844 . A . . END=1212845 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,997 +chrX 1212846 . C . . END=1212846 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,117,1755 +chrX 1212847 . C . . END=1212847 GT:DP:GQ:MIN_DP:PL 0/0:50:0:50:0,0,1211 +chrX 1212848 . A . . END=1212848 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,100,1404 +chrX 1212849 . G . . END=1212850 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,934 +chrX 1212851 . A . . END=1212851 GT:DP:GQ:MIN_DP:PL 0/0:42:55:42:0,55,1107 +chrX 1212852 . T . . END=1212852 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,1050 +chrX 1212853 . C . . END=1212859 GT:DP:GQ:MIN_DP:PL 0/0:39:49:39:0,49,947 +chrX 1212860 . G . . END=1212860 GT:DP:GQ:MIN_DP:PL 0/0:35:1:35:0,1,897 +chrX 1212861 . C . . END=1212864 GT:DP:GQ:MIN_DP:PL 0/0:41:94:41:0,94,1176 +chrX 1212865 . G . . END=1212865 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,788 +chrX 1212866 . C . . END=1212868 GT:DP:GQ:MIN_DP:PL 0/0:37:27:37:0,27,1048 +chrX 1212869 . A . . END=1212869 GT:DP:GQ:MIN_DP:PL 0/0:38:16:38:0,16,993 +chrX 1212870 . C . . END=1212873 GT:DP:GQ:MIN_DP:PL 0/0:35:21:33:0,21,880 +chrX 1212874 . T . . END=1212875 GT:DP:GQ:MIN_DP:PL 0/0:36:4:36:0,4,846 +chrX 1212876 . A . . END=1212876 GT:DP:GQ:MIN_DP:PL 0/0:37:42:37:0,42,1036 +chrX 1212877 . G . . END=1212877 GT:DP:GQ:MIN_DP:PL 0/0:36:14:36:0,14,972 +chrX 1212878 . C . . END=1212879 GT:DP:GQ:MIN_DP:PL 0/0:36:61:36:0,61,1016 +chrX 1212880 . G . . END=1212882 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,694 +chrX 1212883 . C . . END=1212890 GT:DP:GQ:MIN_DP:PL 0/0:34:62:34:0,62,817 +chrX 1212891 . T . . END=1212891 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,758 +chrX 1212892 . T TCCCTCCCCCTCCCCCATCTCCTC, 39.60 . AS_QUALapprox=|47|0;AS_VarDP=7|2|0;BaseQRankSum=1.085;DP=17;MQRankSum=0.000;QUALapprox=47;RAW_GT_COUNT=0,1,0;RAW_MQandDP=61200,17;ReadPosRankSum=-0.812;VarDP=9 GT:AD:DP:GQ:PL:SB 0/1:7,2,0:9:47:47,0,265,69,271,340:0,7,0,2 +chrX 1212893 . C . . END=1212909 GT:DP:GQ:MIN_DP:PL 0/0:11:21:11:0,21,182 +chrX 1212910 . C . . END=1213106 GT:DP:GQ:MIN_DP:PL 0/0:4:3:4:0,3,35 +chrX 1213107 . A C, 29.64 . AS_QUALapprox=|37|0;AS_VarDP=2|2|0;BaseQRankSum=-0.674;DP=10;MQRankSum=-1.383;QUALapprox=37;RAW_GT_COUNT=0,1,0;RAW_MQandDP=26426,10;ReadPosRankSum=-0.674;VarDP=4 GT:AD:DP:GQ:PL:SB 0/1:2,2,0:4:37:37,0,47,43,53,97:1,1,1,1 +chrX 1213108 . C . . END=1213376 GT:DP:GQ:MIN_DP:PL 0/0:7:0:0:0,0,0 +chrX 1213377 . T . . END=1213382 GT:DP:GQ:MIN_DP:PL 0/0:9:24:9:0,24,228 +chrX 1213383 . G . . END=1213383 GT:DP:GQ:MIN_DP:PL 0/0:8:10:8:0,10,209 +chrX 1213384 . T . . END=1213389 GT:DP:GQ:MIN_DP:PL 0/0:10:27:9:0,27,273 +chrX 1213390 . T . . END=1213390 GT:DP:GQ:MIN_DP:PL 0/0:11:18:11:0,18,273 +chrX 1213391 . C . . END=1213393 GT:DP:GQ:MIN_DP:PL 0/0:11:33:11:0,33,362 +chrX 1213394 . T . . END=1213395 GT:DP:GQ:MIN_DP:PL 0/0:10:0:10:0,0,198 +chrX 1213396 . C . . END=1213400 GT:DP:GQ:MIN_DP:PL 0/0:13:36:13:0,36,397 +chrX 1213401 . A . . END=1213401 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,139 +chrX 1213402 . C . . END=1213406 GT:DP:GQ:MIN_DP:PL 0/0:16:45:16:0,45,451 +chrX 1213407 . T . . END=1213407 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,252 +chrX 1213408 . C . . END=1213409 GT:DP:GQ:MIN_DP:PL 0/0:17:51:17:0,51,511 +chrX 1213410 . A . . END=1213410 GT:DP:GQ:MIN_DP:PL 0/0:13:0:13:0,0,254 +chrX 1213411 . C . . END=1213573 GT:DP:GQ:MIN_DP:PL 0/0:23:22:16:0,22,360 +chrX 1213574 . C . . END=1213672 GT:DP:GQ:MIN_DP:PL 0/0:12:0:3:0,0,35 +chrX 1213673 . T . . END=1213714 GT:DP:GQ:MIN_DP:PL 0/0:12:21:8:0,21,256 +chrX 1213715 . CT C, 226.60 . AS_QUALapprox=|234|0;AS_VarDP=12|10|0;BaseQRankSum=-1.004;DP=34;MQRankSum=0.000;QUALapprox=234;RAW_GT_COUNT=0,1,0;RAW_MQandDP=122400,34;ReadPosRankSum=-0.561;VarDP=22 GT:AD:DP:GQ:PL:SB 0/1:12,10,0:22:99:234,0,282,270,312,582:11,1,8,2 +chrX 1213717 . T . . END=1213724 GT:DP:GQ:MIN_DP:PL 0/0:29:66:29:0,66,973 +chrX 1213725 . G . . END=1213725 GT:DP:GQ:MIN_DP:PL 0/0:29:3:29:0,3,790 +chrX 1213726 . A . . END=1216697 GT:DP:GQ:MIN_DP:PL 0/0:54:20:36:0,20,909 +chrX 1216698 . T . . END=1216698 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,972 +chrX 1216699 . C CA, 384.92 . AS_QUALapprox=|399|0;AS_VarDP=4|25|0;BaseQRankSum=0.541;DP=52;MQRankSum=-0.658;QUALapprox=399;RAW_GT_COUNT=0,0,1;RAW_MQandDP=174730,52;ReadPosRankSum=-1.510;VarDP=29 GT:AD:DP:GQ:PL:SB 1/1:4,25,0:29:15:399,15,0,411,73,468:4,0,12,13 +chrX 1216700 . A . . END=1216928 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,102,1530 +chrX 1216929 . C T, 853.64 . AS_QUALapprox=|861|0;AS_VarDP=37|32|0;BaseQRankSum=2.046;DP=72;MQRankSum=0.000;QUALapprox=861;RAW_GT_COUNT=0,1,0;RAW_MQandDP=259200,72;ReadPosRankSum=-1.661;VarDP=69 GT:AD:DP:GQ:PL:SB 0/1:37,32,0:69:99:861,0,939,971,1035,2007:19,18,14,18 +chrX 1216930 . G . . END=1218620 GT:DP:GQ:MIN_DP:PL 0/0:55:23:49:0,23,1054 +chrX 1218621 . G . . END=1218623 GT:DP:GQ:MIN_DP:PL 0/0:49:11:49:0,11,1345 +chrX 1218624 . G . . END=1218624 GT:DP:GQ:MIN_DP:PL 0/0:50:21:50:0,21,1390 +chrX 1218625 . C . . END=1218625 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,1210 +chrX 1218626 . CATAG C,CATAGATAGATAG, 1153.02 . AS_QUALapprox=|539|701|0;AS_VarDP=0|13|16|0;DP=46;QUALapprox=1170;RAW_GT_COUNT=0,0,1;RAW_MQandDP=163808,46;VarDP=29 GT:AD:DP:GQ:PL:SB 1/2:0,13,16,0:29:99:1170,649,631,519,0,469,1172,662,519,1180:0,0,12,17 +chrX 1218631 . A . . END=1218743 GT:DP:GQ:MIN_DP:PL 0/0:43:41:43:0,41,1126 +chrX 1218744 . TA T, 755.60 . AS_QUALapprox=|763|0;AS_VarDP=9|19|0;BaseQRankSum=0.137;DP=39;MQRankSum=0.000;QUALapprox=763;RAW_GT_COUNT=0,1,0;RAW_MQandDP=139504,39;ReadPosRankSum=-1.231;VarDP=28 GT:AD:DP:GQ:PL:SB 0/1:9,19,0:28:99:763,0,320,790,378,1168:2,7,10,9 +chrX 1218746 . G . . END=1218747 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,108,1620 +chrX 1218748 . T TA,TGATA, 1622.02 . AS_QUALapprox=|1319|876|0;AS_VarDP=0|19|7|0;DP=41;QUALapprox=1639;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147600,41;VarDP=26 GT:AD:DP:GQ:PL:SB 1/2:0,19,7,0:26:99:1639,333,320,823,0,763,1403,377,829,1404:0,0,11,15 +chrX 1218749 . G . . END=1218823 GT:DP:GQ:MIN_DP:PL 0/0:40:66:40:0,66,1132 +chrX 1218824 . C CGATA, 723.60 . AS_QUALapprox=|731|0;AS_VarDP=15|19|0;BaseQRankSum=-2.148;DP=46;MQRankSum=0.000;QUALapprox=731;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=0.468;VarDP=34 GT:AD:DP:GQ:PL:SB 0/1:15,19,0:34:99:731,0,565,777,622,1399:12,3,9,10 +chrX 1218825 . G . . END=1219472 GT:DP:GQ:MIN_DP:PL 0/0:53:75:53:0,75,1150 +chrX 1219473 . G A, 469.64 . AS_QUALapprox=|477|0;AS_VarDP=21|17|0;BaseQRankSum=1.903;DP=40;MQRankSum=0.000;QUALapprox=477;RAW_GT_COUNT=0,1,0;RAW_MQandDP=144000,40;ReadPosRankSum=-1.380;VarDP=38 GT:AD:DP:GQ:PL:SB 0/1:21,17,0:38:99:477,0,570,540,622,1161:11,10,7,10 +chrX 1219474 . T . . END=1219510 GT:DP:GQ:MIN_DP:PL 0/0:39:89:39:0,89,1171 +chrX 1219511 . G GATACATAC, 612.60 . AS_QUALapprox=|620|0;AS_VarDP=17|16|0;BaseQRankSum=1.391;DP=42;MQRankSum=-0.970;QUALapprox=620;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151081,42;ReadPosRankSum=-0.577;VarDP=33 GT:AD:DP:GQ:PL:SB 0/1:17,16,0:33:99:620,0,655,672,703,1375:6,11,8,8 +chrX 1219512 . A . . END=1220058 GT:DP:GQ:MIN_DP:PL 0/0:41:59:41:0,59,1013 +chrX 1220059 . T . . END=1220059 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,1103 +chrX 1220060 . A . . END=1220064 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,117,1755 +chrX 1220065 . T . . END=1220065 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,928 +chrX 1220066 . A . . END=1220066 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,120,1800 +chrX 1220067 . C A, 33.64 . AS_QUALapprox=|41|0;AS_VarDP=31|7|0;BaseQRankSum=-3.843;DP=43;MQRankSum=-0.212;QUALapprox=41;RAW_GT_COUNT=0,1,0;RAW_MQandDP=150994,43;ReadPosRankSum=1.187;VarDP=38 GT:AD:DP:GQ:PL:SB 0/1:31,7,0:38:41:41,0,861,133,881,1014:24,7,0,7 +chrX 1220068 . A . . END=1224426 GT:DP:GQ:MIN_DP:PL 0/0:58:43:58:0,43,1092 +chrX 1224427 . T . . END=1224427 GT:DP:GQ:MIN_DP:PL 0/0:55:11:55:0,11,1453 +chrX 1224428 . G . . END=1224520 GT:DP:GQ:MIN_DP:PL 0/0:45:81:45:0,81,1239 +chrX 1224521 . T . . END=1224521 GT:DP:GQ:MIN_DP:PL 0/0:44:13:44:0,13,1161 +chrX 1224522 . G . . END=1224554 GT:DP:GQ:MIN_DP:PL 0/0:44:41:44:0,41,1245 +chrX 1224555 . T . . END=1224555 GT:DP:GQ:MIN_DP:PL 0/0:45:16:45:0,16,1196 +chrX 1224556 . G . . END=1224559 GT:DP:GQ:MIN_DP:PL 0/0:46:26:45:0,26,1186 +chrX 1224560 . C . . END=1224560 GT:DP:GQ:MIN_DP:PL 0/0:46:19:46:0,19,1241 +chrX 1224561 . A . . END=1224722 GT:DP:GQ:MIN_DP:PL 0/0:51:54:51:0,54,1299 +chrX 1224723 . C . . END=1224723 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,1071 +chrX 1224724 . G . . END=1226547 GT:DP:GQ:MIN_DP:PL 0/0:57:58:57:0,58,1101 +chrX 1226548 . A . . END=1226548 GT:DP:GQ:MIN_DP:PL 0/0:49:8:49:0,8,1134 +chrX 1226549 . A . . END=1226666 GT:DP:GQ:MIN_DP:PL 0/0:52:38:47:0,38,1022 +chrX 1226667 . T . . END=1226667 GT:DP:GQ:MIN_DP:PL 0/0:39:18:39:0,18,986 +chrX 1226668 . G . . END=1226879 GT:DP:GQ:MIN_DP:PL 0/0:39:29:33:0,29,747 +chrX 1226880 . A . . END=1226880 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,736 +chrX 1226881 . A . . END=1226897 GT:DP:GQ:MIN_DP:PL 0/0:37:69:37:0,69,1062 +chrX 1226898 . T . . END=1226898 GT:DP:GQ:MIN_DP:PL 0/0:38:11:38:0,11,923 +chrX 1226899 . G . . END=1226904 GT:DP:GQ:MIN_DP:PL 0/0:40:83:40:0,83,1132 +chrX 1226905 . A . . END=1226905 GT:DP:GQ:MIN_DP:PL 0/0:39:18:39:0,18,976 +chrX 1226906 . T . . END=1226927 GT:DP:GQ:MIN_DP:PL 0/0:36:22:35:0,22,758 +chrX 1226928 . T . . END=1226928 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,625 +chrX 1226929 . A . . END=1226931 GT:DP:GQ:MIN_DP:PL 0/0:37:97:37:0,97,1018 +chrX 1226932 . A . . END=1226932 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,627 +chrX 1226933 . G . . END=1226933 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,108,1620 +chrX 1226934 . A . . END=1226934 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,717 +chrX 1226935 . G . . END=1226943 GT:DP:GQ:MIN_DP:PL 0/0:39:64:39:0,64,1061 +chrX 1226944 . A . . END=1226944 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,645 +chrX 1226945 . G . . END=1227111 GT:DP:GQ:MIN_DP:PL 0/0:40:29:38:0,29,883 +chrX 1227112 . C . . END=1227112 GT:DP:GQ:MIN_DP:PL 0/0:53:1:53:0,1,1184 +chrX 1227113 . A . . END=1227127 GT:DP:GQ:MIN_DP:PL 0/0:58:48:58:0,48,1494 +chrX 1227128 . A G, 7.60 . AS_QUALapprox=|15|0;AS_VarDP=37|8|0;BaseQRankSum=-3.112;DP=46;MQRankSum=0.992;QUALapprox=15;RAW_GT_COUNT=0,1,0;RAW_MQandDP=159130,46;ReadPosRankSum=0.787;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:37,8,0:45:15:15,0,969,125,991,1116:15,22,2,6 +chrX 1227129 . G . . END=1227159 GT:DP:GQ:MIN_DP:PL 0/0:51:93:51:0,93,1202 +chrX 1227160 . C . . END=1227160 GT:DP:GQ:MIN_DP:PL 0/0:40:11:40:0,11,980 +chrX 1227161 . A . . END=1227207 GT:DP:GQ:MIN_DP:PL 0/0:38:33:37:0,33,1009 +chrX 1227208 . A . . END=1227208 GT:DP:GQ:MIN_DP:PL 0/0:35:12:35:0,12,828 +chrX 1227209 . A . . END=1227259 GT:DP:GQ:MIN_DP:PL 0/0:40:33:39:0,33,1006 +chrX 1227260 . A . . END=1227260 GT:DP:GQ:MIN_DP:PL 0/0:48:10:48:0,10,1150 +chrX 1227261 . A . . END=1227446 GT:DP:GQ:MIN_DP:PL 0/0:49:33:44:0,33,1081 +chrX 1227447 . C . . END=1227447 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,888 +chrX 1227448 . G . . END=1227518 GT:DP:GQ:MIN_DP:PL 0/0:35:29:31:0,29,819 +chrX 1227519 . T . . END=1227520 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,1001 +chrX 1227521 . A . . END=1227534 GT:DP:GQ:MIN_DP:PL 0/0:29:40:28:0,40,651 +chrX 1227535 . A AGGAT, 367.60 . AS_QUALapprox=|375|0;AS_VarDP=11|10|0;BaseQRankSum=-0.902;DP=33;MQRankSum=0.000;QUALapprox=375;RAW_GT_COUNT=0,1,0;RAW_MQandDP=118800,33;ReadPosRankSum=0.106;VarDP=21 GT:AD:DP:GQ:PL:SB 0/1:11,10,0:21:99:375,0,432,409,462,871:8,3,4,6 +chrX 1227536 . G . . END=1227580 GT:DP:GQ:MIN_DP:PL 0/0:60:38:56:0,38,1219 +chrX 1227581 . C . . END=1227581 GT:DP:GQ:MIN_DP:PL 0/0:59:0:59:0,0,1524 +chrX 1227582 . A . . END=1227584 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 1227585 . A . . END=1227585 GT:DP:GQ:MIN_DP:PL 0/0:66:0:66:0,0,1628 +chrX 1227586 . G . . END=1228285 GT:DP:GQ:MIN_DP:PL 0/0:70:33:60:0,33,1418 +chrX 1228286 . G T, 735.64 . AS_QUALapprox=|743|0;AS_VarDP=28|27|0;BaseQRankSum=2.139;DP=58;MQRankSum=0.000;QUALapprox=743;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-0.312;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:28,27,0:55:99:743,0,708,827,789,1616:13,15,8,19 +chrX 1228287 . G . . END=1228437 GT:DP:GQ:MIN_DP:PL 0/0:57:52:57:0,52,1441 +chrX 1228438 . CT C, 35.60 . AS_QUALapprox=|43|0;AS_VarDP=26|6|0;BaseQRankSum=1.241;DP=47;MQRankSum=0.000;QUALapprox=43;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=1.141;VarDP=32 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,6,0:32:43:0|1:1228438_CT_C:43,0,512,120,530,651:1228438:17,9,4,2 +chrX 1228440 . T . . END=1230554 GT:DP:GQ:MIN_DP:PL 0/0:48:32:42:0,32,807 +chrX 1230555 . T . . END=1230555 GT:DP:GQ:MIN_DP:PL 0/0:54:0:54:0,0,1190 +chrX 1230556 . A . . END=1230707 GT:DP:GQ:MIN_DP:PL 0/0:52:26:50:0,26,1229 +chrX 1230708 . T . . END=1230708 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,1105 +chrX 1230709 . G . . END=1230721 GT:DP:GQ:MIN_DP:PL 0/0:52:21:51:0,21,1314 +chrX 1230722 . T . . END=1230722 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1115 +chrX 1230723 . C . . END=1231654 GT:DP:GQ:MIN_DP:PL 0/0:45:26:40:0,26,1000 +chrX 1231655 . C . . END=1231655 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,1151 +chrX 1231656 . A . . END=1232321 GT:DP:GQ:MIN_DP:PL 0/0:61:59:61:0,59,1528 +chrX 1232322 . T C, 1951.06 . AS_QUALapprox=|1965|0;AS_VarDP=0|60|0;DP=62;QUALapprox=1965;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:1965,180,0,1965,180,1965:0,0,33,27 +chrX 1232323 . T . . END=1232786 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,101,1694 +chrX 1232787 . G C, 2095.06 . AS_QUALapprox=|2109|0;AS_VarDP=0|65|0;DP=66;QUALapprox=2109;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=65 GT:AD:DP:GQ:PL:SB 1/1:0,65,0:65:99:2109,195,0,2109,195,2109:0,0,26,39 +chrX 1232788 . G . . END=1232822 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 1232823 . G A, 1858.06 . AS_QUALapprox=|1872|0;AS_VarDP=0|55|0;DP=59;QUALapprox=1872;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1872,165,0,1872,165,1872:0,0,25,30 +chrX 1232824 . T . . END=1232866 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 1232867 . G A, 1915.06 . AS_QUALapprox=|1929|0;AS_VarDP=0|59|0;DP=61;QUALapprox=1929;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1929,177,0,1929,177,1929:0,0,25,34 +chrX 1232868 . A . . END=1233299 GT:DP:GQ:MIN_DP:PL 0/0:54:51:54:0,51,1265 +chrX 1233300 . G GA, 1016.60 . AS_QUALapprox=|1024|0;AS_VarDP=16|27|0;BaseQRankSum=-1.706;DP=52;MQRankSum=0.000;QUALapprox=1024;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=0.695;VarDP=43 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:16,27,0:43:99:0|1:1233300_G_GA:1024,0,534,1072,614,1687:1233300:13,3,12,15 +chrX 1233301 . A . . END=1233319 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,99,1345 +chrX 1233320 . G A, 1031.64 . AS_QUALapprox=|1039|0;AS_VarDP=16|27|0;BaseQRankSum=0.294;DP=45;MQRankSum=0.000;QUALapprox=1039;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=-0.013;VarDP=43 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:16,27,0:43:99:0|1:1233300_G_GA:1039,0,540,1087,621,1708:1233300:13,3,12,15 +chrX 1233321 . A . . END=1233401 GT:DP:GQ:MIN_DP:PL 0/0:43:94:43:0,94,1220 +chrX 1233402 . C T, 726.64 . AS_QUALapprox=|734|0;AS_VarDP=28|20|0;BaseQRankSum=-0.271;DP=50;MQRankSum=0.000;QUALapprox=734;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=-0.073;VarDP=48 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,20,0:48:99:0|1:1233402_C_T:734,0,1095,818,1155,1973:1233402:19,9,12,8 +chrX 1233403 . G . . END=1233420 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 1233421 . T C, 840.64 . AS_QUALapprox=|848|0;AS_VarDP=32|23|0;BaseQRankSum=0.727;DP=57;MQRankSum=-1.143;QUALapprox=848;RAW_GT_COUNT=0,1,0;RAW_MQandDP=203121,57;ReadPosRankSum=0.141;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:32,23,0:55:99:0|1:1233402_C_T:848,0,1274,944,1344,2288:1233402:19,13,13,10 +chrX 1233422 . G . . END=1233423 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 1233424 . A G, 798.64 . AS_QUALapprox=|806|0;AS_VarDP=32|22|0;BaseQRankSum=0.462;DP=57;MQRankSum=-1.168;QUALapprox=806;RAW_GT_COUNT=0,1,0;RAW_MQandDP=203121,57;ReadPosRankSum=0.123;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:32,22,0:54:99:0|1:1233402_C_T:806,0,1277,902,1344,2246:1233402:19,13,13,9 +chrX 1233425 . G . . END=1233518 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 1233519 . G A, 805.64 . AS_QUALapprox=|813|0;AS_VarDP=33|30|0;BaseQRankSum=1.103;DP=67;MQRankSum=0.000;QUALapprox=813;RAW_GT_COUNT=0,1,0;RAW_MQandDP=238896,67;ReadPosRankSum=1.432;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:33,30,0:63:99:813,0,927,913,1018,1930:15,18,20,10 +chrX 1233520 . C . . END=1233670 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,105,1800 +chrX 1233671 . C T, 495.64 . AS_QUALapprox=|503|0;AS_VarDP=25|15|0;BaseQRankSum=0.089;DP=44;MQRankSum=-1.812;QUALapprox=503;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154130,44;ReadPosRankSum=0.825;VarDP=40 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,15,0:40:99:0|1:1233671_C_T:503,0,892,578,937,1515:1233671:12,13,7,8 +chrX 1233672 . G . . END=1233692 GT:DP:GQ:MIN_DP:PL 0/0:40:81:40:0,81,1215 +chrX 1233693 . G C, 514.64 . AS_QUALapprox=|522|0;AS_VarDP=24|16|0;BaseQRankSum=-0.250;DP=41;MQRankSum=-1.174;QUALapprox=522;RAW_GT_COUNT=0,1,0;RAW_MQandDP=146401,41;ReadPosRankSum=-0.097;VarDP=40 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,16,0:40:99:0|1:1233671_C_T:522,0,916,595,964,1558:1233671:11,13,9,7 +chrX 1233694 . G . . END=1233703 GT:DP:GQ:MIN_DP:PL 0/0:34:69:34:0,69,1035 +chrX 1233704 . CA C, 155.60 . AS_QUALapprox=|163|0;AS_VarDP=13|10|0;BaseQRankSum=0.180;DP=39;MQRankSum=0.965;QUALapprox=163;RAW_GT_COUNT=0,1,0;RAW_MQandDP=137936,39;ReadPosRankSum=-0.792;VarDP=23 GT:AD:DP:GQ:PL:SB 0/1:13,10,0:23:99:163,0,246,201,275,477:7,6,4,6 +chrX 1233706 . A . . END=1233900 GT:DP:GQ:MIN_DP:PL 0/0:53:48:53:0,48,1236 +chrX 1233901 . G . . END=1233901 GT:DP:GQ:MIN_DP:PL 0/0:58:0:58:0,0,1319 +chrX 1233902 . A . . END=1233918 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1233919 . AAC A, 978.60 . AS_QUALapprox=|986|0;AS_VarDP=23|30|0;BaseQRankSum=1.207;DP=56;MQRankSum=-0.838;QUALapprox=986;RAW_GT_COUNT=0,1,0;RAW_MQandDP=199600,56;ReadPosRankSum=1.232;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:23,30,0:53:99:986,0,761,1055,851,1907:12,11,15,15 +chrX 1233922 . A . . END=1234712 GT:DP:GQ:MIN_DP:PL 0/0:57:66:57:0,66,1419 +chrX 1234713 . TTA T, 850.60 . AS_QUALapprox=|858|0;AS_VarDP=22|22|0;BaseQRankSum=0.461;DP=50;MQRankSum=-0.955;QUALapprox=858;RAW_GT_COUNT=0,1,0;RAW_MQandDP=179425,50;ReadPosRankSum=-0.704;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:22,22,0:44:99:858,0,840,924,907,1830:17,5,10,12 +chrX 1234716 . T . . END=1234790 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,104,1438 +chrX 1234791 . A . . END=1234791 GT:DP:GQ:MIN_DP:PL 0/0:45:6:45:0,6,1175 +chrX 1234792 . T . . END=1234793 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 1234794 . A . . END=1234794 GT:DP:GQ:MIN_DP:PL 0/0:44:13:44:0,13,1181 +chrX 1234795 . C . . END=1234795 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 1234796 . C . . END=1234797 GT:DP:GQ:MIN_DP:PL 0/0:46:12:46:0,12,1127 +chrX 1234798 . C . . END=1234815 GT:DP:GQ:MIN_DP:PL 0/0:48:57:48:0,57,1296 +chrX 1234816 . T . . END=1234816 GT:DP:GQ:MIN_DP:PL 0/0:47:12:47:0,12,1245 +chrX 1234817 . T . . END=1235376 GT:DP:GQ:MIN_DP:PL 0/0:58:54:58:0,54,1226 +chrX 1235377 . C G, 280.64 . AS_QUALapprox=|288|0;AS_VarDP=23|13|0;BaseQRankSum=0.391;DP=36;MQRankSum=0.502;QUALapprox=288;RAW_GT_COUNT=0,1,0;RAW_MQandDP=83532,36;ReadPosRankSum=1.780;VarDP=36 GT:AD:DP:GQ:PL:SB 0/1:23,13,0:36:99:288,0,582,357,621,978:8,15,5,8 +chrX 1235378 . G . . END=1235736 GT:DP:GQ:MIN_DP:PL 0/0:39:28:34:0,28,836 +chrX 1235737 . T . . END=1235737 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,704 +chrX 1235738 . C . . END=1235745 GT:DP:GQ:MIN_DP:PL 0/0:24:37:23:0,37,674 +chrX 1235746 . T . . END=1235746 GT:DP:GQ:MIN_DP:PL 0/0:21:0:21:0,0,352 +chrX 1235747 . G . . END=1235764 GT:DP:GQ:MIN_DP:PL 0/0:16:31:14:0,31,416 +chrX 1235765 . T . . END=1235765 GT:DP:GQ:MIN_DP:PL 0/0:14:17:14:0,17,387 +chrX 1235766 . C . . END=1235766 GT:DP:GQ:MIN_DP:PL 0/0:13:39:13:0,39,412 +chrX 1235767 . G . . END=1235767 GT:DP:GQ:MIN_DP:PL 0/0:13:4:13:0,4,352 +chrX 1235768 . G . . END=1235770 GT:DP:GQ:MIN_DP:PL 0/0:16:45:16:0,45,675 +chrX 1235771 . A . . END=1235771 GT:DP:GQ:MIN_DP:PL 0/0:18:19:18:0,19,496 +chrX 1235772 . G . . END=1235774 GT:DP:GQ:MIN_DP:PL 0/0:19:54:19:0,54,810 +chrX 1235775 . A . . END=1235775 GT:DP:GQ:MIN_DP:PL 0/0:17:0:17:0,0,352 +chrX 1235776 . G . . END=1235777 GT:DP:GQ:MIN_DP:PL 0/0:18:51:18:0,51,571 +chrX 1235778 . T . . END=1235778 GT:DP:GQ:MIN_DP:PL 0/0:17:0:17:0,0,252 +chrX 1235779 . G . . END=1235787 GT:DP:GQ:MIN_DP:PL 0/0:18:48:18:0,48,516 +chrX 1235788 . T . . END=1235788 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,387 +chrX 1235789 . C . . END=1235789 GT:DP:GQ:MIN_DP:PL 0/0:17:48:17:0,48,720 +chrX 1235790 . A . . END=1235791 GT:DP:GQ:MIN_DP:PL 0/0:18:0:18:0,0,442 +chrX 1235792 . C . . END=1235806 GT:DP:GQ:MIN_DP:PL 0/0:17:48:17:0,48,496 +chrX 1235807 . T . . END=1235807 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,318 +chrX 1235808 . C . . END=1235827 GT:DP:GQ:MIN_DP:PL 0/0:18:26:15:0,26,441 +chrX 1235828 . T . . END=1235828 GT:DP:GQ:MIN_DP:PL 0/0:19:18:19:0,18,491 +chrX 1235829 . G . . END=1235872 GT:DP:GQ:MIN_DP:PL 0/0:23:35:17:0,35,492 +chrX 1235873 . A . . END=1235873 GT:DP:GQ:MIN_DP:PL 0/0:25:1:25:0,1,611 +chrX 1235874 . G . . END=1235875 GT:DP:GQ:MIN_DP:PL 0/0:27:75:27:0,75,819 +chrX 1235876 . T . . END=1235876 GT:DP:GQ:MIN_DP:PL 0/0:25:0:25:0,0,459 +chrX 1235877 . G . . END=1235924 GT:DP:GQ:MIN_DP:PL 0/0:28:30:27:0,30,674 +chrX 1235925 . T . . END=1235925 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,729 +chrX 1235926 . G . . END=1236020 GT:DP:GQ:MIN_DP:PL 0/0:36:23:31:0,23,727 +chrX 1236021 . A . . END=1236021 GT:DP:GQ:MIN_DP:PL 0/0:35:10:35:0,10,877 +chrX 1236022 . G . . END=1236023 GT:DP:GQ:MIN_DP:PL 0/0:36:93:36:0,93,1071 +chrX 1236024 . T . . END=1236024 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,842 +chrX 1236025 . G . . END=1236154 GT:DP:GQ:MIN_DP:PL 0/0:28:22:26:0,22,719 +chrX 1236155 . T . . END=1236155 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,615 +chrX 1236156 . G . . END=1236165 GT:DP:GQ:MIN_DP:PL 0/0:24:41:24:0,41,665 +chrX 1236166 . T . . END=1236166 GT:DP:GQ:MIN_DP:PL 0/0:20:11:20:0,11,516 +chrX 1236167 . C . . END=1236212 GT:DP:GQ:MIN_DP:PL 0/0:22:35:20:0,35,505 +chrX 1236213 . T . . END=1236213 GT:DP:GQ:MIN_DP:PL 0/0:24:8:24:0,8,526 +chrX 1236214 . C . . END=1236673 GT:DP:GQ:MIN_DP:PL 0/0:45:51:45:0,51,695 +chrX 1236674 . C T, 610.64 . AS_QUALapprox=|618|0;AS_VarDP=42|25|0;BaseQRankSum=-0.060;DP=68;MQRankSum=-5.311;QUALapprox=618;RAW_GT_COUNT=0,1,0;RAW_MQandDP=182335,68;ReadPosRankSum=0.739;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:42,25,0:67:99:618,0,1181,744,1255,2000:19,23,10,15 +chrX 1236675 . A . . END=1237554 GT:DP:GQ:MIN_DP:PL 0/0:63:67:63:0,67,1347 +chrX 1237555 . C T, 825.64 . AS_QUALapprox=|833|0;AS_VarDP=29|31|0;BaseQRankSum=1.580;DP=64;MQRankSum=0.000;QUALapprox=833;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=-1.347;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:29,31,0:60:99:833,0,713,920,806,1726:15,14,13,18 +chrX 1237556 . G . . END=1238817 GT:DP:GQ:MIN_DP:PL 0/0:55:51:55:0,51,1218 +chrX 1238818 . A . . END=1238818 GT:DP:GQ:MIN_DP:PL 0/0:56:0:56:0,0,1223 +chrX 1238819 . G . . END=1238828 GT:DP:GQ:MIN_DP:PL 0/0:52:43:52:0,43,1358 +chrX 1238829 . A . . END=1238829 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1158 +chrX 1238830 . G . . END=1238904 GT:DP:GQ:MIN_DP:PL 0/0:49:25:48:0,25,1361 +chrX 1238905 . A . . END=1238905 GT:DP:GQ:MIN_DP:PL 0/0:51:14:51:0,14,1425 +chrX 1238906 . T TAATA, 1790.03 . AS_QUALapprox=|1804|0;AS_VarDP=0|41|0;DP=50;QUALapprox=1804;RAW_GT_COUNT=0,0,1;RAW_MQandDP=179425,50;VarDP=41 GT:AD:DP:GQ:PL:SB 1/1:0,41,0:41:99:1804,123,0,1804,123,1804:0,0,25,16 +chrX 1238907 . A . . END=1238913 GT:DP:GQ:MIN_DP:PL 0/0:49:81:49:0,81,1393 +chrX 1238914 . A . . END=1238914 GT:DP:GQ:MIN_DP:PL 0/0:51:10:51:0,10,1355 +chrX 1238915 . A . . END=1238916 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,101,1539 +chrX 1238917 . A . . END=1238918 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1206 +chrX 1238919 . A . . END=1239187 GT:DP:GQ:MIN_DP:PL 0/0:55:50:55:0,50,1430 +chrX 1239188 . G GAGA, 2421.03 . AS_QUALapprox=|2435|0;AS_VarDP=0|55|0;DP=60;QUALapprox=2435;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:2435,165,0,2435,166,2436:0,0,20,35 +chrX 1239189 . A . . END=1239277 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1239278 . C T, 2845.06 . AS_QUALapprox=|2859|0;AS_VarDP=0|64|0;DP=66;QUALapprox=2859;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=64 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,64,0:64:99:0|1:1239278_C_T:2859,193,0,2859,193,2859:1239278:0,0,34,30 +chrX 1239279 . T . . END=1239281 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 1239282 . T A, 2821.06 . AS_QUALapprox=|2835|0;AS_VarDP=0|63|0;DP=64;QUALapprox=2835;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=63 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,63,0:63:99:0|1:1239278_C_T:2835,190,0,2835,190,2835:1239278:0,0,34,29 +chrX 1239283 . C . . END=1239291 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1239292 . TA T, 2724.03 . AS_QUALapprox=|2738|0;AS_VarDP=0|62|0;DP=63;QUALapprox=2738;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=62 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,62,0:62:99:0|1:1239278_C_T:2738,187,0,2738,187,2738:1239278:0,0,37,25 +chrX 1239294 . A . . END=1240015 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,101,1414 +chrX 1240016 . C T, 1803.06 . AS_QUALapprox=|1817|0;AS_VarDP=0|55|0;DP=55;QUALapprox=1817;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1817,165,0,1817,165,1817:0,0,23,32 +chrX 1240017 . G . . END=1240098 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1240099 . G C, 1622.06 . AS_QUALapprox=|1636|0;AS_VarDP=0|52|0;DP=53;QUALapprox=1636;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190116,53;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1636,155,0,1636,155,1636:0,0,28,24 +chrX 1240100 . T . . END=1240386 GT:DP:GQ:MIN_DP:PL 0/0:54:42:54:0,42,1378 +chrX 1240387 . C A, 1376.06 . AS_QUALapprox=|1390|0;AS_VarDP=0|42|0;DP=43;QUALapprox=1390;RAW_GT_COUNT=0,0,1;RAW_MQandDP=150486,43;VarDP=42 GT:AD:DP:GQ:PL:SB 1/1:0,42,0:42:99:1390,126,0,1390,126,1390:0,0,24,18 +chrX 1240388 . A . . END=1240627 GT:DP:GQ:MIN_DP:PL 0/0:59:63:59:0,63,1385 +chrX 1240628 . C G, 2331.06 . AS_QUALapprox=|2345|0;AS_VarDP=0|57|0;DP=58;QUALapprox=2345;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205213,58;VarDP=57 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,57,0:57:99:0|1:1240628_C_G:2345,171,0,2345,171,2345:1240628:0,0,26,31 +chrX 1240629 . G . . END=1240640 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 1240641 . CA C, 2326.03 . AS_QUALapprox=|2340|0;AS_VarDP=0|57|0;DP=62;QUALapprox=2340;RAW_GT_COUNT=0,0,1;RAW_MQandDP=217354,62;VarDP=57 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,57,0:57:99:0|1:1240628_C_G:2340,171,0,2340,171,2340:1240628:0,0,27,30 +chrX 1240643 . A . . END=1240770 GT:DP:GQ:MIN_DP:PL 0/0:57:77:57:0,77,1623 +chrX 1240771 . G C, 1653.06 . AS_QUALapprox=|1667|0;AS_VarDP=0|52|0;DP=55;QUALapprox=1667;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1667,155,0,1667,155,1667:0,0,24,28 +chrX 1240772 . C . . END=1240857 GT:DP:GQ:MIN_DP:PL 0/0:44:72:44:0,72,992 +chrX 1240858 . G GTCTCTCTCTGAGGGATGGAGATTTGGGGTGAGTGTGGA, 705.60 . AS_QUALapprox=|713|0;AS_VarDP=4|18|0;BaseQRankSum=-0.682;DP=37;MQRankSum=-1.247;QUALapprox=713;RAW_GT_COUNT=0,1,0;RAW_MQandDP=120879,37;ReadPosRankSum=-0.897;VarDP=22 GT:AD:DP:GQ:PL:SB 0/1:4,18,0:22:99:713,0,118,729,173,902:1,3,7,11 +chrX 1240859 . T . . END=1240861 GT:DP:GQ:MIN_DP:PL 0/0:33:84:33:0,84,1260 +chrX 1240862 . C CTCTCTGAGGGATGGAGATTTGGGGTGAGTGTGGA, 144.60 . AS_QUALapprox=|152|0;AS_VarDP=18|5|0;BaseQRankSum=0.768;DP=37;MQRankSum=0.595;QUALapprox=152;RAW_GT_COUNT=0,1,0;RAW_MQandDP=116489,37;ReadPosRankSum=0.299;VarDP=23 GT:AD:DP:GQ:PL:SB 0/1:18,5,0:23:99:152,0,718,210,733,943:7,11,2,3 +chrX 1240863 . T . . END=1240891 GT:DP:GQ:MIN_DP:PL 0/0:25:36:19:0,36,540 +chrX 1240892 . A . . END=1240893 GT:DP:GQ:MIN_DP:PL 0/0:33:0:22:0,0,203 +chrX 1240894 . G . . END=1240895 GT:DP:GQ:MIN_DP:PL 0/0:44:66:44:0,66,990 +chrX 1240896 . G . . END=1240896 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,164 +chrX 1240897 . T . . END=1240901 GT:DP:GQ:MIN_DP:PL 0/0:39:63:39:0,63,945 +chrX 1240902 . G . . END=1240905 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,179 +chrX 1240906 . G . . END=1240906 GT:DP:GQ:MIN_DP:PL 0/0:37:66:37:0,66,990 +chrX 1240907 . C . . END=1240910 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,0 +chrX 1240911 . A . . END=1240911 GT:DP:GQ:MIN_DP:PL 0/0:35:66:35:0,66,1038 +chrX 1240912 . G . . END=1240920 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,343 +chrX 1240921 . G . . END=1240922 GT:DP:GQ:MIN_DP:PL 0/0:39:43:39:0,43,1080 +chrX 1240923 . T . . END=1240923 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,452 +chrX 1240924 . G . . END=1240924 GT:DP:GQ:MIN_DP:PL 0/0:38:72:38:0,72,1080 +chrX 1240925 . A . . END=1240925 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,506 +chrX 1240926 . G . . END=1240926 GT:DP:GQ:MIN_DP:PL 0/0:39:75:39:0,75,1125 +chrX 1240927 . T . . END=1240927 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,401 +chrX 1240928 . G . . END=1240928 GT:DP:GQ:MIN_DP:PL 0/0:37:78:37:0,78,1170 +chrX 1240929 . G . . END=1240930 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,894 +chrX 1240931 . G . . END=1240931 GT:DP:GQ:MIN_DP:PL 0/0:35:56:35:0,56,1038 +chrX 1240932 . T . . END=1240943 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,487 +chrX 1240944 . G . . END=1240944 GT:DP:GQ:MIN_DP:PL 0/0:36:87:36:0,87,1305 +chrX 1240945 . G . . END=1240953 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,753 +chrX 1240954 . T . . END=1240959 GT:DP:GQ:MIN_DP:PL 0/0:33:25:33:0,25,898 +chrX 1240960 . T . . END=1240960 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,706 +chrX 1240961 . G . . END=1240977 GT:DP:GQ:MIN_DP:PL 0/0:30:21:26:0,21,755 +chrX 1240978 . A . . END=1240978 GT:DP:GQ:MIN_DP:PL 0/0:27:3:27:0,3,691 +chrX 1240979 . G . . END=1240981 GT:DP:GQ:MIN_DP:PL 0/0:27:46:27:0,46,839 +chrX 1240982 . A . . END=1240982 GT:DP:GQ:MIN_DP:PL 0/0:24:0:24:0,0,555 +chrX 1240983 . T . . END=1240985 GT:DP:GQ:MIN_DP:PL 0/0:26:25:25:0,25,669 +chrX 1240986 . A . . END=1240986 GT:DP:GQ:MIN_DP:PL 0/0:25:15:25:0,15,669 +chrX 1240987 . G . . END=1240988 GT:DP:GQ:MIN_DP:PL 0/0:26:40:26:0,40,677 +chrX 1240989 . T . . END=1240991 GT:DP:GQ:MIN_DP:PL 0/0:25:0:25:0,0,514 +chrX 1240992 . G . . END=1240992 GT:DP:GQ:MIN_DP:PL 0/0:26:60:26:0,60,900 +chrX 1240993 . G . . END=1240993 GT:DP:GQ:MIN_DP:PL 0/0:26:0:26:0,0,685 +chrX 1240994 . G . . END=1240995 GT:DP:GQ:MIN_DP:PL 0/0:26:40:26:0,40,759 +chrX 1240996 . T . . END=1240998 GT:DP:GQ:MIN_DP:PL 0/0:25:0:25:0,0,450 +chrX 1240999 . G . . END=1240999 GT:DP:GQ:MIN_DP:PL 0/0:25:63:25:0,63,945 +chrX 1241000 . T . . END=1241000 GT:DP:GQ:MIN_DP:PL 0/0:26:0:26:0,0,487 +chrX 1241001 . G . . END=1241008 GT:DP:GQ:MIN_DP:PL 0/0:25:23:25:0,23,676 +chrX 1241009 . C . . END=1241010 GT:DP:GQ:MIN_DP:PL 0/0:23:0:23:0,0,426 +chrX 1241011 . C . . END=1241013 GT:DP:GQ:MIN_DP:PL 0/0:24:27:22:0,27,586 +chrX 1241014 . A . . END=1241014 GT:DP:GQ:MIN_DP:PL 0/0:25:1:25:0,1,600 +chrX 1241015 . G . . END=1241018 GT:DP:GQ:MIN_DP:PL 0/0:25:44:25:0,44,619 +chrX 1241019 . T . . END=1241020 GT:DP:GQ:MIN_DP:PL 0/0:23:0:23:0,0,491 +chrX 1241021 . G . . END=1241034 GT:DP:GQ:MIN_DP:PL 0/0:22:24:21:0,24,535 +chrX 1241035 . A . . END=1241035 GT:DP:GQ:MIN_DP:PL 0/0:15:0:15:0,0,231 +chrX 1241036 . T . . END=1241037 GT:DP:GQ:MIN_DP:PL 0/0:18:39:18:0,39,496 +chrX 1241038 . G . . END=1241038 GT:DP:GQ:MIN_DP:PL 0/0:17:2:17:0,2,432 +chrX 1241039 . G . . END=1241040 GT:DP:GQ:MIN_DP:PL 0/0:18:45:18:0,45,675 +chrX 1241041 . G . . END=1241043 GT:DP:GQ:MIN_DP:PL 0/0:15:0:15:0,0,311 +chrX 1241044 . T . . END=1241050 GT:DP:GQ:MIN_DP:PL 0/0:17:33:16:0,33,457 +chrX 1241051 . G . . END=1241051 GT:DP:GQ:MIN_DP:PL 0/0:17:16:17:0,16,471 +chrX 1241052 . G . . END=1241053 GT:DP:GQ:MIN_DP:PL 0/0:18:29:17:0,29,526 +chrX 1241054 . A . . END=1241055 GT:DP:GQ:MIN_DP:PL 0/0:19:0:19:0,0,401 +chrX 1241056 . G . . END=1241057 GT:DP:GQ:MIN_DP:PL 0/0:18:51:18:0,51,551 +chrX 1241058 . A . . END=1241058 GT:DP:GQ:MIN_DP:PL 0/0:18:19:18:0,19,485 +chrX 1241059 . G . . END=1241061 GT:DP:GQ:MIN_DP:PL 0/0:19:21:19:0,21,438 +chrX 1241062 . T . . END=1241062 GT:DP:GQ:MIN_DP:PL 0/0:19:7:19:0,7,420 +chrX 1241063 . T . . END=1241070 GT:DP:GQ:MIN_DP:PL 0/0:19:22:17:0,22,501 +chrX 1241071 . G . . END=1241072 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,248 +chrX 1241073 . G . . END=1241078 GT:DP:GQ:MIN_DP:PL 0/0:16:20:15:0,20,371 +chrX 1241079 . C . . END=1241093 GT:DP:GQ:MIN_DP:PL 0/0:13:0:13:0,0,133 +chrX 1241094 . A . . END=1241098 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,233 +chrX 1241099 . T . . END=1241100 GT:DP:GQ:MIN_DP:PL 0/0:8:15:8:0,15,225 +chrX 1241101 . G . . END=1241103 GT:DP:GQ:MIN_DP:PL 0/0:10:21:10:0,21,315 +chrX 1241104 . T . . END=1241104 GT:DP:GQ:MIN_DP:PL 0/0:9:2:9:0,2,223 +chrX 1241105 . G . . END=1241105 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,315 +chrX 1241106 . A . . END=1241110 GT:DP:GQ:MIN_DP:PL 0/0:10:0:10:0,0,174 +chrX 1241111 . G . . END=1241111 GT:DP:GQ:MIN_DP:PL 0/0:10:24:10:0,24,360 +chrX 1241112 . G . . END=1241116 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,4 +chrX 1241117 . T . . END=1241119 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,243 +chrX 1241120 . C . . END=1241120 GT:DP:GQ:MIN_DP:PL 0/0:9:2:9:0,2,243 +chrX 1241121 . T . . END=1241122 GT:DP:GQ:MIN_DP:PL 0/0:9:24:9:0,24,268 +chrX 1241123 . A . . END=1241123 GT:DP:GQ:MIN_DP:PL 0/0:10:0:10:0,0,278 +chrX 1241124 . G . . END=1241132 GT:DP:GQ:MIN_DP:PL 0/0:11:30:11:0,30,318 +chrX 1241133 . A . . END=1241133 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,262 +chrX 1241134 . T . . END=1241135 GT:DP:GQ:MIN_DP:PL 0/0:11:30:11:0,30,328 +chrX 1241136 . T . . END=1241136 GT:DP:GQ:MIN_DP:PL 0/0:11:8:11:0,8,293 +chrX 1241137 . G . . END=1241140 GT:DP:GQ:MIN_DP:PL 0/0:14:39:14:0,39,585 +chrX 1241141 . T . . END=1241141 GT:DP:GQ:MIN_DP:PL 0/0:11:8:11:0,8,272 +chrX 1241142 . G . . END=1241142 GT:DP:GQ:MIN_DP:PL 0/0:14:39:14:0,39,585 +chrX 1241143 . A . . END=1241143 GT:DP:GQ:MIN_DP:PL 0/0:12:0:12:0,0,238 +chrX 1241144 . G . . END=1241144 GT:DP:GQ:MIN_DP:PL 0/0:14:39:14:0,39,585 +chrX 1241145 . C . . END=1241145 GT:DP:GQ:MIN_DP:PL 0/0:12:0:12:0,0,238 +chrX 1241146 . G . . END=1241150 GT:DP:GQ:MIN_DP:PL 0/0:13:33:11:0,33,332 +chrX 1241151 . T . . END=1241152 GT:DP:GQ:MIN_DP:PL 0/0:13:4:13:0,4,297 +chrX 1241153 . T . . END=1241153 GT:DP:GQ:MIN_DP:PL 0/0:14:42:14:0,42,437 +chrX 1241154 . C . . END=1241154 GT:DP:GQ:MIN_DP:PL 0/0:12:11:12:0,11,338 +chrX 1241155 . T . . END=1241158 GT:DP:GQ:MIN_DP:PL 0/0:15:23:13:0,23,412 +chrX 1241159 . A . . END=1241159 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,219 +chrX 1241160 . G . . END=1241160 GT:DP:GQ:MIN_DP:PL 0/0:18:51:18:0,51,765 +chrX 1241161 . G . . END=1241161 GT:DP:GQ:MIN_DP:PL 0/0:18:5:18:0,5,437 +chrX 1241162 . G . . END=1241162 GT:DP:GQ:MIN_DP:PL 0/0:16:48:16:0,48,486 +chrX 1241163 . A . . END=1241163 GT:DP:GQ:MIN_DP:PL 0/0:17:0:17:0,0,391 +chrX 1241164 . T . . END=1241169 GT:DP:GQ:MIN_DP:PL 0/0:16:20:14:0,20,352 +chrX 1241170 . T . . END=1241170 GT:DP:GQ:MIN_DP:PL 0/0:18:19:18:0,19,456 +chrX 1241171 . T . . END=1241171 GT:DP:GQ:MIN_DP:PL 0/0:17:51:17:0,51,520 +chrX 1241172 . T . . END=1241172 GT:DP:GQ:MIN_DP:PL 0/0:14:7:14:0,7,367 +chrX 1241173 . G . . END=1241178 GT:DP:GQ:MIN_DP:PL 0/0:19:25:17:0,25,431 +chrX 1241179 . A . . END=1241179 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,377 +chrX 1241180 . G . . END=1241180 GT:DP:GQ:MIN_DP:PL 0/0:19:54:19:0,54,810 +chrX 1241181 . T . . END=1241181 GT:DP:GQ:MIN_DP:PL 0/0:15:0:15:0,0,334 +chrX 1241182 . G . . END=1241193 GT:DP:GQ:MIN_DP:PL 0/0:17:20:17:0,20,381 +chrX 1241194 . T . . END=1241194 GT:DP:GQ:MIN_DP:PL 0/0:17:16:17:0,16,461 +chrX 1241195 . G . . END=1241195 GT:DP:GQ:MIN_DP:PL 0/0:22:60:22:0,60,900 +chrX 1241196 . A . . END=1241196 GT:DP:GQ:MIN_DP:PL 0/0:21:0:21:0,0,432 +chrX 1241197 . G . . END=1241199 GT:DP:GQ:MIN_DP:PL 0/0:20:32:19:0,32,540 +chrX 1241200 . A . . END=1241201 GT:DP:GQ:MIN_DP:PL 0/0:18:0:18:0,0,373 +chrX 1241202 . G . . END=1241205 GT:DP:GQ:MIN_DP:PL 0/0:19:36:17:0,36,461 +chrX 1241206 . A . . END=1241206 GT:DP:GQ:MIN_DP:PL 0/0:18:0:18:0,0,367 +chrX 1241207 . T . . END=1241208 GT:DP:GQ:MIN_DP:PL 0/0:20:35:19:0,35,545 +chrX 1241209 . T . . END=1241209 GT:DP:GQ:MIN_DP:PL 0/0:19:0:19:0,0,481 +chrX 1241210 . G . . END=1241214 GT:DP:GQ:MIN_DP:PL 0/0:21:28:18:0,28,514 +chrX 1241215 . A . . END=1241216 GT:DP:GQ:MIN_DP:PL 0/0:22:0:22:0,0,449 +chrX 1241217 . G . . END=1241224 GT:DP:GQ:MIN_DP:PL 0/0:23:25:20:0,25,525 +chrX 1241225 . G . . END=1241225 GT:DP:GQ:MIN_DP:PL 0/0:22:17:22:0,17,606 +chrX 1241226 . T . . END=1241228 GT:DP:GQ:MIN_DP:PL 0/0:22:25:21:0,25,484 +chrX 1241229 . C . . END=1241230 GT:DP:GQ:MIN_DP:PL 0/0:24:0:24:0,0,570 +chrX 1241231 . G . . END=1241231 GT:DP:GQ:MIN_DP:PL 0/0:25:61:25:0,61,730 +chrX 1241232 . A . . END=1241232 GT:DP:GQ:MIN_DP:PL 0/0:23:0:23:0,0,479 +chrX 1241233 . G . . END=1241235 GT:DP:GQ:MIN_DP:PL 0/0:25:37:24:0,37,715 +chrX 1241236 . A . . END=1241236 GT:DP:GQ:MIN_DP:PL 0/0:25:0:25:0,0,418 +chrX 1241237 . T . . END=1241237 GT:DP:GQ:MIN_DP:PL 0/0:24:47:24:0,47,654 +chrX 1241238 . A . . END=1241238 GT:DP:GQ:MIN_DP:PL 0/0:24:0:24:0,0,428 +chrX 1241239 . G . . END=1241244 GT:DP:GQ:MIN_DP:PL 0/0:25:26:25:0,26,619 +chrX 1241245 . T . . END=1241245 GT:DP:GQ:MIN_DP:PL 0/0:27:7:27:0,7,639 +chrX 1241246 . G . . END=1241249 GT:DP:GQ:MIN_DP:PL 0/0:28:49:28:0,49,792 +chrX 1241250 . T . . END=1241250 GT:DP:GQ:MIN_DP:PL 0/0:23:0:23:0,0,590 +chrX 1241251 . G . . END=1241252 GT:DP:GQ:MIN_DP:PL 0/0:27:24:26:0,24,753 +chrX 1241253 . A . . END=1241254 GT:DP:GQ:MIN_DP:PL 0/0:26:0:26:0,0,396 +chrX 1241255 . G . . END=1241255 GT:DP:GQ:MIN_DP:PL 0/0:28:49:28:0,49,904 +chrX 1241256 . G . . END=1241260 GT:DP:GQ:MIN_DP:PL 0/0:27:0:27:0,0,569 +chrX 1241261 . C . . END=1241264 GT:DP:GQ:MIN_DP:PL 0/0:27:59:27:0,59,758 +chrX 1241265 . C . . END=1241268 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,630 +chrX 1241269 . G . . END=1241269 GT:DP:GQ:MIN_DP:PL 0/0:29:81:29:0,81,1215 +chrX 1241270 . G . . END=1241270 GT:DP:GQ:MIN_DP:PL 0/0:29:0:29:0,0,749 +chrX 1241271 . G . . END=1241271 GT:DP:GQ:MIN_DP:PL 0/0:29:84:29:0,84,1260 +chrX 1241272 . A . . END=1241273 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,520 +chrX 1241274 . G . . END=1241274 GT:DP:GQ:MIN_DP:PL 0/0:31:93:31:0,93,1037 +chrX 1241275 . G . . END=1241278 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,704 +chrX 1241279 . T . . END=1241280 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,928 +chrX 1241281 . T . . END=1241281 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,817 +chrX 1241282 . G . . END=1241284 GT:DP:GQ:MIN_DP:PL 0/0:34:78:34:0,78,1092 +chrX 1241285 . G . . END=1241286 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,795 +chrX 1241287 . G . . END=1241287 GT:DP:GQ:MIN_DP:PL 0/0:38:20:38:0,20,1052 +chrX 1241288 . A . . END=1241290 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,588 +chrX 1241291 . G . . END=1241291 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,111,1665 +chrX 1241292 . T . . END=1241293 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,137 +chrX 1241294 . G . . END=1241332 GT:DP:GQ:MIN_DP:PL 0/0:53:20:45:0,20,1166 +chrX 1241333 . G GTCTCTCTCTGAGGGATGGAGATTTGGGGTGAGTGGGGA, 536.60 . AS_QUALapprox=|544|0;AS_VarDP=20|19|0;BaseQRankSum=-0.227;DP=45;MQRankSum=-1.040;QUALapprox=544;RAW_GT_COUNT=0,1,0;RAW_MQandDP=152843,45;ReadPosRankSum=-1.885;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:20,19,0:39:99:544,0,598,606,654,1260:7,13,11,8 +chrX 1241334 . T . . END=1241732 GT:DP:GQ:MIN_DP:PL 0/0:47:77:47:0,77,1107 +chrX 1241733 . A G, 634.64 . AS_QUALapprox=|642|0;AS_VarDP=21|18|0;BaseQRankSum=-1.029;DP=41;MQRankSum=0.000;QUALapprox=642;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147600,41;ReadPosRankSum=0.592;VarDP=39 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,18,0:39:99:0|1:1241733_A_G:642,0,776,705,831,1535:1241733:9,12,9,9 +chrX 1241734 . G . . END=1241746 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1440 +chrX 1241747 . T A, 1481.06 . AS_QUALapprox=|1495|0;AS_VarDP=0|38|0;DP=41;QUALapprox=1495;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147600,41;VarDP=38 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,38,0:38:99:0|1:1241733_A_G:1495,114,0,1495,114,1495:1241733:0,0,20,18 +chrX 1241748 . A . . END=1241754 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1440 +chrX 1241755 . A G, 703.64 . AS_QUALapprox=|711|0;AS_VarDP=19|20|0;BaseQRankSum=-0.896;DP=42;MQRankSum=0.000;QUALapprox=711;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151200,42;ReadPosRankSum=-0.658;VarDP=39 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:19,20,0:39:99:0|1:1241733_A_G:711,0,707,768,767,1535:1241733:9,10,11,9 +chrX 1241756 . T . . END=1241915 GT:DP:GQ:MIN_DP:PL 0/0:55:73:55:0,73,1291 +chrX 1241916 . T . . END=1241916 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,1187 +chrX 1241917 . G . . END=1241925 GT:DP:GQ:MIN_DP:PL 0/0:48:66:48:0,66,1305 +chrX 1241926 . T . . END=1241926 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,1028 +chrX 1241927 . A . . END=1242441 GT:DP:GQ:MIN_DP:PL 0/0:59:56:59:0,56,1101 +chrX 1242442 . T G, 609.64 . AS_QUALapprox=|617|0;AS_VarDP=16|23|0;BaseQRankSum=-0.750;DP=43;MQRankSum=-0.782;QUALapprox=617;RAW_GT_COUNT=0,1,0;RAW_MQandDP=152834,43;ReadPosRankSum=0.071;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:16,23,0:39:99:617,0,419,665,488,1153:6,10,12,11 +chrX 1242443 . T . . END=1242443 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,1256 +chrX 1242444 . T . . END=1242534 GT:DP:GQ:MIN_DP:PL 0/0:51:67:51:0,67,1358 +chrX 1242535 . C A, 677.64 . AS_QUALapprox=|685|0;AS_VarDP=23|25|0;BaseQRankSum=0.519;DP=49;MQRankSum=0.000;QUALapprox=685;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=-0.527;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:23,25,0:48:99:685,0,605,754,680,1434:13,10,13,12 +chrX 1242536 . A . . END=1242772 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,105,1479 +chrX 1242773 . C T, 727.64 . AS_QUALapprox=|735|0;AS_VarDP=28|20|0;BaseQRankSum=-2.328;DP=52;MQRankSum=0.000;QUALapprox=735;RAW_GT_COUNT=0,1,0;RAW_MQandDP=186304,52;ReadPosRankSum=0.239;VarDP=48 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,20,0:48:99:0|1:1242773_C_T:735,0,1105,820,1165,1985:1242773:16,12,9,11 +chrX 1242774 . C . . END=1242780 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 1242781 . A C, 786.64 . AS_QUALapprox=|794|0;AS_VarDP=29|21|0;BaseQRankSum=-1.726;DP=52;MQRankSum=0.000;QUALapprox=794;RAW_GT_COUNT=0,1,0;RAW_MQandDP=186304,52;ReadPosRankSum=-0.393;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,21,0:50:99:0|1:1242773_C_T:794,0,1154,882,1218,2099:1242773:16,13,8,13 +chrX 1242782 . C T, 786.64 . AS_QUALapprox=|794|0;AS_VarDP=29|21|0;BaseQRankSum=-1.689;DP=52;MQRankSum=0.000;QUALapprox=794;RAW_GT_COUNT=0,1,0;RAW_MQandDP=186304,52;ReadPosRankSum=-0.482;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,21,0:50:99:0|1:1242773_C_T:794,0,1154,882,1218,2099:1242773:16,13,8,13 +chrX 1242783 . C . . END=1243319 GT:DP:GQ:MIN_DP:PL 0/0:53:42:53:0,42,1052 +chrX 1243320 . G A, 629.64 . AS_QUALapprox=|637|0;AS_VarDP=25|24|0;BaseQRankSum=0.345;DP=53;MQRankSum=0.000;QUALapprox=637;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=-1.361;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:25,24,0:49:99:637,0,646,712,718,1430:15,10,13,11 +chrX 1243321 . A . . END=1243660 GT:DP:GQ:MIN_DP:PL 0/0:53:49:53:0,49,1146 +chrX 1243661 . T . . END=1243661 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,1058 +chrX 1243662 . C . . END=1243662 GT:DP:GQ:MIN_DP:PL 0/0:46:50:46:0,50,1311 +chrX 1243663 . C . . END=1243663 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,1189 +chrX 1243664 . A . . END=1243664 GT:DP:GQ:MIN_DP:PL 0/0:48:60:48:0,60,1410 +chrX 1243665 . T . . END=1243665 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,868 +chrX 1243666 . T TAA, 810.03 . AS_QUALapprox=|824|0;AS_VarDP=0|30|0;DP=43;QUALapprox=824;RAW_GT_COUNT=0,0,1;RAW_MQandDP=152800,43;VarDP=30 GT:AD:DP:GQ:PL:SB 1/1:0,30,0:30:89:824,89,0,824,89,824:0,0,13,17 +chrX 1243667 . A . . END=1243684 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,102,1530 +chrX 1243685 . G . . END=1243687 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,1073 +chrX 1243688 . A . . END=1244319 GT:DP:GQ:MIN_DP:PL 0/0:58:58:58:0,58,1254 +chrX 1244320 . T . . END=1244320 GT:DP:GQ:MIN_DP:PL 0/0:38:15:38:0,15,1023 +chrX 1244321 . G . . END=1244380 GT:DP:GQ:MIN_DP:PL 0/0:38:34:36:0,34,921 +chrX 1244381 . T . . END=1244381 GT:DP:GQ:MIN_DP:PL 0/0:37:3:37:0,3,739 +chrX 1244382 . G . . END=1244569 GT:DP:GQ:MIN_DP:PL 0/0:23:33:19:0,33,495 +chrX 1244570 . A . . END=1244570 GT:DP:GQ:MIN_DP:PL 0/0:21:0:21:0,0,501 +chrX 1244571 . G . . END=1244574 GT:DP:GQ:MIN_DP:PL 0/0:20:39:19:0,39,585 +chrX 1244575 . A . . END=1244575 GT:DP:GQ:MIN_DP:PL 0/0:21:0:21:0,0,532 +chrX 1244576 . G . . END=1244579 GT:DP:GQ:MIN_DP:PL 0/0:21:42:21:0,42,630 +chrX 1244580 . A . . END=1244580 GT:DP:GQ:MIN_DP:PL 0/0:21:3:21:0,3,561 +chrX 1244581 . G . . END=1244584 GT:DP:GQ:MIN_DP:PL 0/0:21:38:21:0,38,609 +chrX 1244585 . A . . END=1244585 GT:DP:GQ:MIN_DP:PL 0/0:22:17:22:0,17,616 +chrX 1244586 . G . . END=1244598 GT:DP:GQ:MIN_DP:PL 0/0:24:23:23:0,23,690 +chrX 1244599 . G A, 335.64 . AS_QUALapprox=|343|0;AS_VarDP=14|10|0;BaseQRankSum=-0.282;DP=28;MQRankSum=0.000;QUALapprox=343;RAW_GT_COUNT=0,1,0;RAW_MQandDP=100800,28;ReadPosRankSum=1.923;VarDP=24 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:14,10,0:24:99:0|1:1244599_G_A:343,0,475,384,506,890:1244599:12,2,9,1 +chrX 1244600 . A . . END=1244608 GT:DP:GQ:MIN_DP:PL 0/0:24:53:24:0,53,810 +chrX 1244609 . G A, 325.64 . AS_QUALapprox=|333|0;AS_VarDP=17|10|0;BaseQRankSum=0.902;DP=30;MQRankSum=0.000;QUALapprox=333;RAW_GT_COUNT=0,1,0;RAW_MQandDP=108000,30;ReadPosRankSum=1.608;VarDP=27 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:17,10,0:27:99:0|1:1244599_G_A:333,0,572,384,602,986:1244599:13,4,9,1 +chrX 1244610 . A . . END=1245562 GT:DP:GQ:MIN_DP:PL 0/0:45:41:30:0,41,720 +chrX 1245563 . G T, 58.64 . AS_QUALapprox=|66|0;AS_VarDP=27|10|0;BaseQRankSum=0.614;DP=44;MQRankSum=-3.069;QUALapprox=66;RAW_GT_COUNT=0,1,0;RAW_MQandDP=142951,44;ReadPosRankSum=0.394;VarDP=37 GT:AD:DP:GQ:PL:SB 0/1:27,10,0:37:66:66,0,660,144,685,829:8,19,8,2 +chrX 1245564 . T . . END=1245564 GT:DP:GQ:MIN_DP:PL 0/0:40:78:40:0,78,1170 +chrX 1245565 . A . . END=1245565 GT:DP:GQ:MIN_DP:PL 0/0:32:17:32:0,17,783 +chrX 1245566 . T . . END=1246244 GT:DP:GQ:MIN_DP:PL 0/0:38:36:36:0,36,853 +chrX 1246245 . C . . END=1246245 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,928 +chrX 1246246 . A . . END=1247131 GT:DP:GQ:MIN_DP:PL 0/0:60:26:57:0,26,1150 +chrX 1247132 . T . . END=1247132 GT:DP:GQ:MIN_DP:PL 0/0:46:19:46:0,19,1251 +chrX 1247133 . G . . END=1247189 GT:DP:GQ:MIN_DP:PL 0/0:35:33:35:0,33,906 +chrX 1247190 . C . . END=1247190 GT:DP:GQ:MIN_DP:PL 0/0:33:15:33:0,15,869 +chrX 1247191 . T . . END=1247191 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +chrX 1247192 . C . . END=1247193 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,844 +chrX 1247194 . A . . END=1247880 GT:DP:GQ:MIN_DP:PL 0/0:43:31:23:0,31,650 +chrX 1247881 . A . . END=1247881 GT:DP:GQ:MIN_DP:PL 0/0:26:0:26:0,0,564 +chrX 1247882 . G GGA, 414.02 . AS_QUALapprox=|428|0;AS_VarDP=0|13|0;DP=33;QUALapprox=428;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115034,33;VarDP=13 GT:AD:DP:GQ:PL:SB 1/1:0,13,0:13:39:428,39,0,428,39,429:0,0,8,5 +chrX 1247883 . G . . END=1247907 GT:DP:GQ:MIN_DP:PL 0/0:36:36:35:0,36,765 +chrX 1247908 . G . . END=1247908 GT:DP:GQ:MIN_DP:PL 0/0:35:1:35:0,1,867 +chrX 1247909 . G . . END=1248025 GT:DP:GQ:MIN_DP:PL 0/0:21:22:19:0,22,520 +chrX 1248026 . G . . END=1248026 GT:DP:GQ:MIN_DP:PL 0/0:18:19:18:0,19,486 +chrX 1248027 . A . . END=1248029 GT:DP:GQ:MIN_DP:PL 0/0:18:42:18:0,42,630 +chrX 1248030 . A . . END=1248030 GT:DP:GQ:MIN_DP:PL 0/0:18:5:18:0,5,436 +chrX 1248031 . G . . END=1248032 GT:DP:GQ:MIN_DP:PL 0/0:18:42:18:0,42,630 +chrX 1248033 . A . . END=1248035 GT:DP:GQ:MIN_DP:PL 0/0:17:13:17:0,13,437 +chrX 1248036 . G . . END=1248037 GT:DP:GQ:MIN_DP:PL 0/0:17:39:17:0,39,585 +chrX 1248038 . A . . END=1248038 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,377 +chrX 1248039 . G . . END=1248039 GT:DP:GQ:MIN_DP:PL 0/0:16:33:16:0,33,495 +chrX 1248040 . A . . END=1248040 GT:DP:GQ:MIN_DP:PL 0/0:16:13:16:0,13,427 +chrX 1248041 . G . . END=1248042 GT:DP:GQ:MIN_DP:PL 0/0:16:33:16:0,33,495 +chrX 1248043 . G . . END=1248154 GT:DP:GQ:MIN_DP:PL 0/0:6:0:6:0,0,0 +chrX 1248155 . A . . END=1248155 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,243 +chrX 1248156 . T . . END=1248156 GT:DP:GQ:MIN_DP:PL 0/0:8:9:8:0,9,178 +chrX 1248157 . A . . END=1248170 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,223 +chrX 1248171 . T . . END=1248171 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,148 +chrX 1248172 . A . . END=1248172 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,315 +chrX 1248173 . G . . END=1248173 GT:DP:GQ:MIN_DP:PL 0/0:7:7:7:0,7,164 +chrX 1248174 . G . . END=1248176 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,315 +chrX 1248177 . A . . END=1248177 GT:DP:GQ:MIN_DP:PL 0/0:9:0:9:0,0,202 +chrX 1248178 . G . . END=1248184 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,315 +chrX 1248185 . A . . END=1248192 GT:DP:GQ:MIN_DP:PL 0/0:9:0:9:0,0,92 +chrX 1248193 . G . . END=1248196 GT:DP:GQ:MIN_DP:PL 0/0:10:21:10:0,21,315 +chrX 1248197 . A . . END=1248197 GT:DP:GQ:MIN_DP:PL 0/0:10:0:10:0,0,278 +chrX 1248198 . G . . END=1248199 GT:DP:GQ:MIN_DP:PL 0/0:12:27:12:0,27,405 +chrX 1248200 . G . . END=1248200 GT:DP:GQ:MIN_DP:PL 0/0:12:11:12:0,11,328 +chrX 1248201 . G . . END=1248201 GT:DP:GQ:MIN_DP:PL 0/0:11:27:11:0,27,405 +chrX 1248202 . A . . END=1248202 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,233 +chrX 1248203 . G . . END=1248206 GT:DP:GQ:MIN_DP:PL 0/0:13:27:12:0,27,405 +chrX 1248207 . A . . END=1248207 GT:DP:GQ:MIN_DP:PL 0/0:12:1:12:0,1,328 +chrX 1248208 . G . . END=1248211 GT:DP:GQ:MIN_DP:PL 0/0:13:33:13:0,33,495 +chrX 1248212 . A . . END=1248212 GT:DP:GQ:MIN_DP:PL 0/0:14:7:14:0,7,387 +chrX 1248213 . G . . END=1248216 GT:DP:GQ:MIN_DP:PL 0/0:16:36:16:0,36,540 +chrX 1248217 . A . . END=1248217 GT:DP:GQ:MIN_DP:PL 0/0:19:18:19:0,18,511 +chrX 1248218 . G . . END=1248320 GT:DP:GQ:MIN_DP:PL 0/0:21:25:19:0,25,510 +chrX 1248321 . A . . END=1248321 GT:DP:GQ:MIN_DP:PL 0/0:18:19:18:0,19,546 +chrX 1248322 . G . . END=1248332 GT:DP:GQ:MIN_DP:PL 0/0:20:21:19:0,21,516 +chrX 1248333 . T . . END=1248333 GT:DP:GQ:MIN_DP:PL 0/0:20:0:20:0,0,317 +chrX 1248334 . G . . END=1248340 GT:DP:GQ:MIN_DP:PL 0/0:22:41:22:0,41,675 +chrX 1248341 . G . . END=1248341 GT:DP:GQ:MIN_DP:PL 0/0:22:7:22:0,7,626 +chrX 1248342 . G . . END=1248387 GT:DP:GQ:MIN_DP:PL 0/0:21:22:19:0,22,551 +chrX 1248388 . A . . END=1248388 GT:DP:GQ:MIN_DP:PL 0/0:22:0:22:0,0,556 +chrX 1248389 . G . . END=1248389 GT:DP:GQ:MIN_DP:PL 0/0:22:63:22:0,63,945 +chrX 1248390 . A . . END=1248390 GT:DP:GQ:MIN_DP:PL 0/0:23:0:23:0,0,560 +chrX 1248391 . G . . END=1248391 GT:DP:GQ:MIN_DP:PL 0/0:23:66:23:0,66,990 +chrX 1248392 . T . . END=1248393 GT:DP:GQ:MIN_DP:PL 0/0:24:0:24:0,0,411 +chrX 1248394 . G . . END=1248394 GT:DP:GQ:MIN_DP:PL 0/0:27:75:27:0,75,1125 +chrX 1248395 . A . . END=1248395 GT:DP:GQ:MIN_DP:PL 0/0:23:0:23:0,0,491 +chrX 1248396 . G . . END=1248401 GT:DP:GQ:MIN_DP:PL 0/0:29:62:29:0,62,858 +chrX 1248402 . A . . END=1248402 GT:DP:GQ:MIN_DP:PL 0/0:24:0:24:0,0,527 +chrX 1248403 . G . . END=1248411 GT:DP:GQ:MIN_DP:PL 0/0:30:38:29:0,38,819 +chrX 1248412 . A . . END=1248412 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,729 +chrX 1248413 . G . . END=1248454 GT:DP:GQ:MIN_DP:PL 0/0:40:45:40:0,45,698 +chrX 1248455 . C CGAGAG, 1346.03 . AS_QUALapprox=|1360|0;AS_VarDP=0|31|0;DP=37;QUALapprox=1360;RAW_GT_COUNT=0,0,1;RAW_MQandDP=131809,37;VarDP=31 GT:AD:DP:GQ:PL:SB 1/1:0,31,0:31:93:1360,93,0,1361,93,1361:0,0,18,13 +chrX 1248456 . G . . END=1249140 GT:DP:GQ:MIN_DP:PL 0/0:50:37:38:0,37,1132 +chrX 1249141 . A C,AC, 314.60 . AS_QUALapprox=|85|322|0;AS_VarDP=13|7|13|0;BaseQRankSum=0.062;DP=42;MQRankSum=0.000;QUALapprox=322;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151200,42;ReadPosRankSum=1.235;VarDP=33 GT:AD:DP:GQ:PL:SB 0/2:13,7,13,0:33:99:322,237,831,0,247,332,371,723,379,841:8,5,9,11 +chrX 1249142 . C . . END=1249152 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,105,1575 +chrX 1249153 . A . . END=1249153 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,1010 +chrX 1249154 . C . . END=1250507 GT:DP:GQ:MIN_DP:PL 0/0:53:53:53:0,53,972 +chrX 1250508 . A . . END=1250509 GT:DP:GQ:MIN_DP:PL 0/0:56:10:56:0,10,1450 +chrX 1250510 . CTAGATAGATAGATAGATAGA C,CTAGATAGATAGATAGA, 1350.02 . AS_QUALapprox=|633|785|0;AS_VarDP=0|17|18|0;DP=58;QUALapprox=1367;RAW_GT_COUNT=0,0,1;RAW_MQandDP=204957,58;VarDP=35 GT:AD:DP:GQ:PL:SB 1/2:0,17,18,0:35:99:1367,734,962,637,0,582,1392,886,659,1520:0,0,17,18 +chrX 1250531 . T . . END=1250539 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,117,1755 +chrX 1250540 . A . . END=1250540 GT:DP:GQ:MIN_DP:PL 0/0:54:0:54:0,0,1330 +chrX 1250541 . G . . END=1251497 GT:DP:GQ:MIN_DP:PL 0/0:52:30:18:0,30,450 +chrX 1251498 . G . . END=1251498 GT:DP:GQ:MIN_DP:PL 0/0:13:14:13:0,14,392 +chrX 1251499 . A . . END=1251596 GT:DP:GQ:MIN_DP:PL 0/0:16:30:14:0,30,442 +chrX 1251597 . A G, 404.64 . AS_QUALapprox=|412|0;AS_VarDP=26|18|0;BaseQRankSum=-1.441;DP=44;MQRankSum=-2.103;QUALapprox=412;RAW_GT_COUNT=0,1,0;RAW_MQandDP=150958,44;ReadPosRankSum=-0.824;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:26,18,0:44:99:412,0,741,490,794,1285:13,13,7,11 +chrX 1251598 . T . . END=1251838 GT:DP:GQ:MIN_DP:PL 0/0:44:59:44:0,59,1077 +chrX 1251839 . T TGATA, 481.60 . AS_QUALapprox=|489|0;AS_VarDP=13|13|0;BaseQRankSum=-1.113;DP=36;MQRankSum=0.000;QUALapprox=489;RAW_GT_COUNT=0,1,0;RAW_MQandDP=129600,36;ReadPosRankSum=-0.205;VarDP=26 GT:AD:DP:GQ:PL:SB 0/1:13,13,0:26:99:489,0,507,529,546,1075:8,5,7,6 +chrX 1251840 . G . . END=1256485 GT:DP:GQ:MIN_DP:PL 0/0:59:46:59:0,46,1274 +chrX 1256486 . A . . END=1256486 GT:DP:GQ:MIN_DP:PL 0/0:61:10:61:0,10,1594 +chrX 1256487 . C . . END=1258070 GT:DP:GQ:MIN_DP:PL 0/0:53:54:53:0,54,1138 +chrX 1258071 . A G, 674.64 . AS_QUALapprox=|682|0;AS_VarDP=25|26|0;BaseQRankSum=0.650;DP=53;MQRankSum=-2.001;QUALapprox=682;RAW_GT_COUNT=0,1,0;RAW_MQandDP=185987,53;ReadPosRankSum=1.329;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:25,26,0:51:99:682,0,590,756,668,1424:14,11,13,13 +chrX 1258072 . C . . END=1258131 GT:DP:GQ:MIN_DP:PL 0/0:51:35:50:0,35,1509 +chrX 1258132 . T G, 902.64 . AS_QUALapprox=|910|0;AS_VarDP=27|24|0;BaseQRankSum=0.565;DP=52;MQRankSum=-2.520;QUALapprox=910;RAW_GT_COUNT=0,1,0;RAW_MQandDP=174269,52;ReadPosRankSum=1.266;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:27,24,0:51:99:910,0,1023,991,1095,2087:13,14,9,15 +chrX 1258133 . A . . END=1258146 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 1258147 . CGGGG C, 906.60 . AS_QUALapprox=|914|0;AS_VarDP=31|24|0;BaseQRankSum=1.926;DP=55;MQRankSum=-2.346;QUALapprox=914;RAW_GT_COUNT=0,1,0;RAW_MQandDP=179233,55;ReadPosRankSum=1.095;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:31,24,0:55:99:0|1:1258147_CGGGG_C:914,0,1229,1008,1302,2309:1258147:15,16,10,14 +chrX 1258151 . G GACAA, 864.60 . AS_QUALapprox=|872|0;AS_VarDP=31|23|0;BaseQRankSum=-2.259;DP=54;MQRankSum=-2.438;QUALapprox=872;RAW_GT_COUNT=0,1,0;RAW_MQandDP=175633,54;ReadPosRankSum=1.409;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:31,23,0:54:99:0|1:1258147_CGGGG_C:872,0,1232,966,1302,2267:1258147:15,16,10,13 +chrX 1258152 . T . . END=1258153 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 1258154 . C A, 864.64 . AS_QUALapprox=|872|0;AS_VarDP=31|23|0;BaseQRankSum=2.365;DP=54;MQRankSum=-2.438;QUALapprox=872;RAW_GT_COUNT=0,1,0;RAW_MQandDP=175633,54;ReadPosRankSum=1.328;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:31,23,0:54:99:0|1:1258147_CGGGG_C:872,0,1232,966,1302,2267:1258147:15,16,10,13 +chrX 1258155 . A . . END=1258189 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,115,1608 +chrX 1258190 . G A, 779.64 . AS_QUALapprox=|787|0;AS_VarDP=29|31|0;BaseQRankSum=0.221;DP=64;MQRankSum=-2.454;QUALapprox=787;RAW_GT_COUNT=0,1,0;RAW_MQandDP=214783,64;ReadPosRankSum=-0.340;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:29,31,0:60:99:787,0,681,873,774,1647:12,17,13,18 +chrX 1258191 . G . . END=1258196 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1258197 . T G, 2188.06 . AS_QUALapprox=|2202|0;AS_VarDP=0|60|0;DP=60;QUALapprox=2202;RAW_GT_COUNT=0,0,1;RAW_MQandDP=200383,60;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:2202,179,0,2202,179,2202:0,0,25,35 +chrX 1258198 . T . . END=1258263 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,117,1430 +chrX 1258264 . A G, 720.64 . AS_QUALapprox=|728|0;AS_VarDP=23|20|0;BaseQRankSum=-1.523;DP=43;MQRankSum=-2.771;QUALapprox=728;RAW_GT_COUNT=0,1,0;RAW_MQandDP=142589,43;ReadPosRankSum=-0.202;VarDP=43 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,20,0:43:99:0|1:1258264_A_G:728,0,883,797,943,1741:1258264:10,13,10,10 +chrX 1258265 . G . . END=1258275 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,102,1281 +chrX 1258276 . G A, 657.64 . AS_QUALapprox=|665|0;AS_VarDP=23|18|0;BaseQRankSum=-0.527;DP=42;MQRankSum=-1.978;QUALapprox=665;RAW_GT_COUNT=0,1,0;RAW_MQandDP=144989,42;ReadPosRankSum=-0.079;VarDP=41 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,18,0:41:99:0|1:1258264_A_G:665,0,889,734,943,1677:1258264:10,13,10,8 +chrX 1258277 . A . . END=1258328 GT:DP:GQ:MIN_DP:PL 0/0:37:54:37:0,54,810 +chrX 1258329 . CAA C, 181.60 . AS_QUALapprox=|189|0;AS_VarDP=17|8|0;BaseQRankSum=0.457;DP=41;MQRankSum=0.000;QUALapprox=189;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147600,41;ReadPosRankSum=-0.239;VarDP=25 GT:AD:DP:GQ:PL:SB 0/1:17,8,0:25:99:189,0,436,240,460,701:10,7,8,0 +chrX 1258332 . A . . END=1259029 GT:DP:GQ:MIN_DP:PL 0/0:57:30:54:0,30,1052 +chrX 1259030 . T C, 1473.06 . AS_QUALapprox=|1487|0;AS_VarDP=0|49|0;DP=52;QUALapprox=1487;RAW_GT_COUNT=0,0,1;RAW_MQandDP=181965,52;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1487,146,0,1487,146,1487:0,0,29,20 +chrX 1259031 . G . . END=1259364 GT:DP:GQ:MIN_DP:PL 0/0:56:57:56:0,57,1076 +chrX 1259365 . C CA, 1341.03 . AS_QUALapprox=|1355|0;AS_VarDP=0|51|0;DP=68;QUALapprox=1355;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1355,153,0,1356,153,1356:0,0,27,24 +chrX 1259366 . A . . END=1259467 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1259468 . T C, 1109.64 . AS_QUALapprox=|1117|0;AS_VarDP=38|32|0;BaseQRankSum=0.700;DP=70;MQRankSum=-1.061;QUALapprox=1117;RAW_GT_COUNT=0,1,0;RAW_MQandDP=249489,70;ReadPosRankSum=1.693;VarDP=70 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:38,32,0:70:99:0|1:1259468_T_C:1117,0,1386,1232,1482,2714:1259468:15,23,12,20 +chrX 1259469 . A . . END=1259488 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 1259489 . C T, 1263.64 . AS_QUALapprox=|1271|0;AS_VarDP=33|37|0;BaseQRankSum=-1.691;DP=70;MQRankSum=-0.916;QUALapprox=1271;RAW_GT_COUNT=0,1,0;RAW_MQandDP=249489,70;ReadPosRankSum=-0.117;VarDP=70 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:33,37,0:70:99:0|1:1259468_T_C:1271,0,1233,1370,1344,2714:1259468:12,21,16,21 +chrX 1259490 . T . . END=1259961 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1259962 . G A, 720.64 . AS_QUALapprox=|728|0;AS_VarDP=34|29|0;BaseQRankSum=0.120;DP=64;MQRankSum=0.955;QUALapprox=728;RAW_GT_COUNT=0,1,0;RAW_MQandDP=225954,64;ReadPosRankSum=-0.069;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:34,29,0:63:99:728,0,882,831,969,1800:17,17,13,16 +chrX 1259963 . A . . END=1260288 GT:DP:GQ:MIN_DP:PL 0/0:61:44:61:0,44,1394 +chrX 1260289 . A . . END=1260289 GT:DP:GQ:MIN_DP:PL 0/0:56:10:56:0,10,1410 +chrX 1260290 . T . . END=1260393 GT:DP:GQ:MIN_DP:PL 0/0:61:84:61:0,84,1560 +chrX 1260394 . C T, 728.64 . AS_QUALapprox=|736|0;AS_VarDP=28|28|0;BaseQRankSum=0.627;DP=61;MQRankSum=-1.402;QUALapprox=736;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216277,61;ReadPosRankSum=0.189;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:28,28,0:56:99:736,0,715,819,798,1617:13,15,9,19 +chrX 1260395 . G . . END=1260664 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,106,1335 +chrX 1260665 . T C, 1038.64 . AS_QUALapprox=|1046|0;AS_VarDP=26|28|0;BaseQRankSum=0.565;DP=55;MQRankSum=-0.927;QUALapprox=1046;RAW_GT_COUNT=0,1,0;RAW_MQandDP=196000,55;ReadPosRankSum=-1.412;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,28,0:54:99:0|1:1260665_T_C:1046,0,1007,1124,1092,2216:1260665:12,14,13,15 +chrX 1260666 . C . . END=1260668 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,117,1579 +chrX 1260669 . G C, 989.64 . AS_QUALapprox=|997|0;AS_VarDP=28|26|0;BaseQRankSum=0.978;DP=55;MQRankSum=-1.001;QUALapprox=997;RAW_GT_COUNT=0,1,0;RAW_MQandDP=196000,55;ReadPosRankSum=-0.495;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,26,0:54:99:0|1:1260665_T_C:997,0,1097,1081,1176,2257:1260665:12,16,11,15 +chrX 1260670 . G . . END=1260672 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 1260673 . C T, 996.64 . AS_QUALapprox=|1004|0;AS_VarDP=29|26|0;BaseQRankSum=1.474;DP=56;MQRankSum=-1.020;QUALapprox=1004;RAW_GT_COUNT=0,1,0;RAW_MQandDP=199600,56;ReadPosRankSum=-0.107;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,26,0:55:99:0|1:1260665_T_C:1004,0,1119,1092,1197,2289:1260665:13,16,12,14 +chrX 1260674 . A . . END=1260697 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 1260698 . G C, 959.64 . AS_QUALapprox=|967|0;AS_VarDP=28|26|0;BaseQRankSum=2.832;DP=58;MQRankSum=-0.053;QUALapprox=967;RAW_GT_COUNT=0,1,0;RAW_MQandDP=203904,58;ReadPosRankSum=0.160;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,26,0:54:99:0|1:1260665_T_C:967,0,951,1051,1029,2080:1260665:13,15,14,12 +chrX 1260699 . C . . END=1260945 GT:DP:GQ:MIN_DP:PL 0/0:56:51:56:0,51,1410 +chrX 1260946 . C T, 639.64 . AS_QUALapprox=|647|0;AS_VarDP=25|24|0;BaseQRankSum=1.298;DP=52;MQRankSum=-0.063;QUALapprox=647;RAW_GT_COUNT=0,1,0;RAW_MQandDP=179726,52;ReadPosRankSum=-0.200;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:25,24,0:49:99:647,0,627,722,699,1421:13,12,11,13 +chrX 1260947 . T . . END=1261185 GT:DP:GQ:MIN_DP:PL 0/0:65:27:55:0,27,1435 +chrX 1261186 . G A, 767.64 . AS_QUALapprox=|775|0;AS_VarDP=22|29|0;BaseQRankSum=-1.174;DP=55;MQRankSum=-1.216;QUALapprox=775;RAW_GT_COUNT=0,1,0;RAW_MQandDP=191600,55;ReadPosRankSum=-0.466;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:22,29,0:51:99:775,0,581,841,669,1509:11,11,13,16 +chrX 1261187 . C . . END=1261399 GT:DP:GQ:MIN_DP:PL 0/0:68:98:68:0,98,1657 +chrX 1261400 . G A, 1089.64 . AS_QUALapprox=|1097|0;AS_VarDP=20|38|0;BaseQRankSum=-0.261;DP=61;MQRankSum=0.000;QUALapprox=1097;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-0.777;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:20,38,0:58:99:1097,0,486,1157,600,1757:9,11,23,15 +chrX 1261401 . A . . END=1261598 GT:DP:GQ:MIN_DP:PL 0/0:56:60:56:0,60,1400 +chrX 1261599 . C G, 712.64 . AS_QUALapprox=|720|0;AS_VarDP=18|25|0;BaseQRankSum=1.767;DP=44;MQRankSum=0.000;QUALapprox=720;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=0.172;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:18,25,0:43:99:720,0,432,774,507,1281:6,12,9,16 +chrX 1261600 . C . . END=1261640 GT:DP:GQ:MIN_DP:PL 0/0:41:86:41:0,86,1157 +chrX 1261641 . TTTTTC T, 893.60 . AS_QUALapprox=|901|0;AS_VarDP=18|24|0;BaseQRankSum=-0.023;DP=49;MQRankSum=-0.799;QUALapprox=901;RAW_GT_COUNT=0,1,0;RAW_MQandDP=167040,49;ReadPosRankSum=1.112;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:18,24,0:42:99:901,0,651,955,723,1678:6,12,8,16 +chrX 1261647 . T . . END=1261672 GT:DP:GQ:MIN_DP:PL 0/0:45:93:45:0,93,1395 +chrX 1261673 . T . . END=1261677 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,649 +chrX 1261678 . TTTC T, 396.04 . AS_QUALapprox=|832|0;AS_VarDP=20|23|0;BaseQRankSum=-1.273;DP=47;MQRankSum=-2.432;QUALapprox=832;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158736,47;ReadPosRankSum=1.209;VarDP=43 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:20,23,0:43:99:0|1:1261678_TTTC_T:832,0,737,655,796,1394:1261678:11,8,6,7 +chrX 1261682 . T . . END=1261685 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,555 +chrX 1261686 . T . . END=1261688 GT:DP:GQ:MIN_DP:PL 0/0:42:81:42:0,81,1215 +chrX 1261689 . C T, 271.64 . AS_QUALapprox=|279|0;AS_VarDP=20|13|0;BaseQRankSum=-1.182;DP=44;MQRankSum=-2.501;QUALapprox=279;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147936,44;ReadPosRankSum=0.621;VarDP=33 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:20,13,0:33:99:0|1:1261678_TTTC_T:279,0,762,399,837,1469:1261678:13,7,6,7 +chrX 1261690 . T . . END=1261696 GT:DP:GQ:MIN_DP:PL 0/0:44:57:44:0,57,1045 +chrX 1261697 . TTTTTTTTC T, 265.60 . AS_QUALapprox=|273|0;AS_VarDP=22|13|0;BaseQRankSum=-2.021;DP=45;MQRankSum=-2.568;QUALapprox=273;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151536,45;ReadPosRankSum=0.532;VarDP=35 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,13,0:35:99:0|1:1261678_TTTC_T:273,0,816,395,878,1490:1261678:14,7,6,7 +chrX 1261706 . T . . END=1261721 GT:DP:GQ:MIN_DP:PL 0/0:45:25:41:0,25,810 +chrX 1261722 . G . . END=1261724 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,576 +chrX 1261725 . A . . END=1262048 GT:DP:GQ:MIN_DP:PL 0/0:40:43:40:0,43,715 +chrX 1262049 . T C, 689.64 . AS_QUALapprox=|697|0;AS_VarDP=17|27|0;BaseQRankSum=-0.543;DP=46;MQRankSum=0.000;QUALapprox=697;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=0.398;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:17,27,0:44:99:697,0,418,748,498,1246:7,10,13,14 +chrX 1262050 . C . . END=1262129 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,102,1175 +chrX 1262130 . C G, 551.64 . AS_QUALapprox=|559|0;AS_VarDP=26|21|0;BaseQRankSum=-0.259;DP=50;MQRankSum=0.000;QUALapprox=559;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=0.417;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:26,21,0:47:99:559,0,732,637,795,1432:15,11,14,7 +chrX 1262131 . G . . END=1262190 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,116,1484 +chrX 1262191 . C A, 760.64 . AS_QUALapprox=|768|0;AS_VarDP=23|27|0;BaseQRankSum=1.487;DP=51;MQRankSum=-0.637;QUALapprox=768;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158989,51;ReadPosRankSum=0.088;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:23,27,0:50:99:768,0,584,836,666,1502:17,6,16,11 +chrX 1262192 . A . . END=1262273 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,119,1687 +chrX 1262274 . A G, 1973.06 . AS_QUALapprox=|1987|0;AS_VarDP=0|53|0;DP=57;QUALapprox=1987;RAW_GT_COUNT=0,0,1;RAW_MQandDP=148723,57;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1987,159,0,1987,159,1987:0,0,29,24 +chrX 1262275 . T . . END=1262295 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 1262296 . C G, 1006.64 . AS_QUALapprox=|1014|0;AS_VarDP=23|28|0;BaseQRankSum=0.402;DP=52;MQRankSum=-3.150;QUALapprox=1014;RAW_GT_COUNT=0,1,0;RAW_MQandDP=132608,52;ReadPosRankSum=-0.322;VarDP=51 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,28,0:51:99:0|1:1262296_C_G:1014,0,800,1083,884,1967:1262296:10,13,19,9 +chrX 1262297 . T . . END=1262302 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,120,1800 +chrX 1262303 . A G, 1929.06 . AS_QUALapprox=|1943|0;AS_VarDP=0|50|0;DP=52;QUALapprox=1943;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133427,52;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1943,150,0,1943,150,1943:0,0,29,21 +chrX 1262304 . G . . END=1262314 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,120,1800 +chrX 1262315 . G A, 908.64 . AS_QUALapprox=|916|0;AS_VarDP=24|25|0;BaseQRankSum=1.499;DP=50;MQRankSum=-2.590;QUALapprox=916;RAW_GT_COUNT=0,1,0;RAW_MQandDP=137150,50;ReadPosRankSum=0.774;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,25,0:49:99:0|1:1262296_C_G:916,0,829,988,904,1892:1262296:12,12,18,7 +chrX 1262316 . G . . END=1262401 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 1262402 . A C, 544.64 . AS_QUALapprox=|552|0;AS_VarDP=25|21|0;BaseQRankSum=0.417;DP=49;MQRankSum=-2.234;QUALapprox=552;RAW_GT_COUNT=0,1,0;RAW_MQandDP=171930,49;ReadPosRankSum=0.110;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:25,21,0:46:99:552,0,671,627,734,1361:12,13,9,12 +chrX 1262403 . G . . END=1262678 GT:DP:GQ:MIN_DP:PL 0/0:47:31:46:0,31,1296 +chrX 1262679 . C . . END=1262680 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,1216 +chrX 1262681 . A . . END=1262681 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,120,1800 +chrX 1262682 . G . . END=1262683 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,1097 +chrX 1262684 . A . . END=1262684 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,120,1800 +chrX 1262685 . T . . END=1262686 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,1007 +chrX 1262687 . T . . END=1262687 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,120,1800 +chrX 1262688 . A . . END=1262688 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,1072 +chrX 1262689 . T . . END=1262722 GT:DP:GQ:MIN_DP:PL 0/0:38:64:33:0,64,973 +chrX 1262723 . G A, 633.64 . AS_QUALapprox=|641|0;AS_VarDP=9|22|0;BaseQRankSum=1.271;DP=39;MQRankSum=0.000;QUALapprox=641;RAW_GT_COUNT=0,1,0;RAW_MQandDP=138949,39;ReadPosRankSum=-0.849;VarDP=31 GT:AD:DP:GQ:PL:SB 0/1:9,22,0:31:99:641,0,190,668,256,924:2,7,11,11 +chrX 1262724 . C . . END=1262728 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 1262729 . A . . END=1262729 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,461 +chrX 1262730 . A . . END=1262758 GT:DP:GQ:MIN_DP:PL 0/0:50:37:47:0,37,1369 +chrX 1262759 . G . . END=1262759 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,1171 +chrX 1262760 . G . . END=1262761 GT:DP:GQ:MIN_DP:PL 0/0:47:34:47:0,34,1354 +chrX 1262762 . T . . END=1262762 GT:DP:GQ:MIN_DP:PL 0/0:45:6:45:0,6,1286 +chrX 1262763 . C . . END=1262767 GT:DP:GQ:MIN_DP:PL 0/0:46:25:43:0,25,1256 +chrX 1262768 . G . . END=1262768 GT:DP:GQ:MIN_DP:PL 0/0:46:9:46:0,9,1291 +chrX 1262769 . G . . END=1262936 GT:DP:GQ:MIN_DP:PL 0/0:48:60:48:0,60,1097 +chrX 1262937 . C T, 858.64 . AS_QUALapprox=|866|0;AS_VarDP=24|33|0;BaseQRankSum=0.332;DP=61;MQRankSum=-1.960;QUALapprox=866;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208016,61;ReadPosRankSum=0.938;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:24,33,0:57:99:866,0,572,938,671,1609:12,12,20,13 +chrX 1262938 . G . . END=1262987 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1262988 . TA T, 499.60 . AS_QUALapprox=|507|0;AS_VarDP=19|24|0;BaseQRankSum=-0.377;DP=57;MQRankSum=0.000;QUALapprox=507;RAW_GT_COUNT=0,1,0;RAW_MQandDP=196716,57;ReadPosRankSum=-0.428;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:19,24,0:43:99:507,0,376,564,448,1012:11,8,12,12 +chrX 1262990 . A . . END=1263240 GT:DP:GQ:MIN_DP:PL 0/0:59:97:59:0,97,1453 +chrX 1263241 . A C, 973.64 . AS_QUALapprox=|981|0;AS_VarDP=33|26|0;BaseQRankSum=-1.719;DP=59;MQRankSum=0.000;QUALapprox=981;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=0.283;VarDP=59 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:33,26,0:59:99:0|1:1263241_A_C:981,0,1306,1080,1384,2464:1263241:18,15,10,16 +chrX 1263242 . A C, 973.64 . AS_QUALapprox=|981|0;AS_VarDP=33|26|0;BaseQRankSum=-1.741;DP=60;MQRankSum=0.000;QUALapprox=981;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=0.305;VarDP=59 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:33,26,0:59:99:0|1:1263241_A_C:981,0,1306,1080,1384,2464:1263241:18,15,10,16 +chrX 1263243 . A . . END=1263351 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1263352 . G A, 1802.06 . AS_QUALapprox=|1816|0;AS_VarDP=0|54|0;DP=57;QUALapprox=1816;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:1816,162,0,1816,162,1816:0,0,30,24 +chrX 1263353 . G . . END=1263390 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1263391 . T C, 623.64 . AS_QUALapprox=|631|0;AS_VarDP=31|25|0;BaseQRankSum=0.186;DP=57;MQRankSum=0.934;QUALapprox=631;RAW_GT_COUNT=0,1,0;RAW_MQandDP=203200,57;ReadPosRankSum=1.855;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:31,25,0:56:99:631,0,850,724,924,1649:19,12,16,9 +chrX 1263392 . A . . END=1263484 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 1263485 . T C, 1254.64 . AS_QUALapprox=|1262|0;AS_VarDP=41|33|0;BaseQRankSum=0.257;DP=75;MQRankSum=-0.208;QUALapprox=1262;RAW_GT_COUNT=0,1,0;RAW_MQandDP=262635,75;ReadPosRankSum=0.223;VarDP=74 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:41,33,0:74:99:0|1:1263485_T_C:1262,0,1606,1386,1705,3091:1263485:17,24,15,18 +chrX 1263486 . A . . END=1263493 GT:DP:GQ:MIN_DP:PL 0/0:76:99:76:0,120,1800 +chrX 1263494 . C G, 1332.64 . AS_QUALapprox=|1340|0;AS_VarDP=43|35|0;BaseQRankSum=0.245;DP=78;MQRankSum=-0.197;QUALapprox=1340;RAW_GT_COUNT=0,1,0;RAW_MQandDP=273435,78;ReadPosRankSum=0.578;VarDP=78 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:43,35,0:78:99:0|1:1263485_T_C:1340,0,1684,1470,1789,3259:1263485:19,24,16,19 +chrX 1263495 . G . . END=1263496 GT:DP:GQ:MIN_DP:PL 0/0:77:99:77:0,120,1800 +chrX 1263497 . A G, 2847.06 . AS_QUALapprox=|2861|0;AS_VarDP=0|77|0;DP=79;QUALapprox=2861;RAW_GT_COUNT=0,0,1;RAW_MQandDP=277035,79;VarDP=77 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,77,0:77:99:0|1:1263485_T_C:2861,231,0,2861,231,2861:1263485:0,0,34,43 +chrX 1263498 . T . . END=1263503 GT:DP:GQ:MIN_DP:PL 0/0:75:99:75:0,120,1800 +chrX 1263504 . C T, 1419.64 . AS_QUALapprox=|1427|0;AS_VarDP=42|38|0;BaseQRankSum=0.671;DP=82;MQRankSum=-0.551;QUALapprox=1427;RAW_GT_COUNT=0,1,0;RAW_MQandDP=287260,82;ReadPosRankSum=0.290;VarDP=80 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:42,38,0:80:99:0|1:1263485_T_C:1427,0,1610,1554,1724,3278:1263485:18,24,18,20 +chrX 1263505 . G . . END=1263668 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 1263669 . C T, 1048.64 . AS_QUALapprox=|1056|0;AS_VarDP=27|38|0;BaseQRankSum=0.793;DP=66;MQRankSum=0.000;QUALapprox=1056;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=-0.706;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:27,38,0:65:99:1056,0,658,1136,772,1909:15,12,19,19 +chrX 1263670 . G . . END=1264335 GT:DP:GQ:MIN_DP:PL 0/0:18:21:10:0,21,315 +chrX 1264336 . A . . END=1264521 GT:DP:GQ:MIN_DP:PL 0/0:0:0:0:0,0,0 +chrX 1264522 . T . . END=1264596 GT:DP:GQ:MIN_DP:PL 0/0:17:21:9:0,21,243 +chrX 1264597 . A . . END=1264597 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,1201 +chrX 1264598 . T . . END=1265048 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,105,1510 +chrX 1265049 . A G, 1109.64 . AS_QUALapprox=|1117|0;AS_VarDP=17|39|0;BaseQRankSum=-0.560;DP=58;MQRankSum=0.000;QUALapprox=1117;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=0.455;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:17,39,0:56:99:1117,0,403,1168,520,1688:6,11,20,19 +chrX 1265050 . T . . END=1265562 GT:DP:GQ:MIN_DP:PL 0/0:61:78:61:0,78,1170 +chrX 1265563 . G A, 437.64 . AS_QUALapprox=|445|0;AS_VarDP=13|17|0;BaseQRankSum=-1.263;DP=30;MQRankSum=-1.851;QUALapprox=445;RAW_GT_COUNT=0,1,0;RAW_MQandDP=87622,30;ReadPosRankSum=-0.544;VarDP=30 GT:AD:DP:GQ:PL:SB 0/1:13,17,0:30:99:445,0,337,484,388,872:5,8,9,8 +chrX 1265564 . T . . END=1265587 GT:DP:GQ:MIN_DP:PL 0/0:20:22:19:0,22,530 +chrX 1265588 . T . . END=1265588 GT:DP:GQ:MIN_DP:PL 0/0:21:0:21:0,0,461 +chrX 1265589 . C . . END=1265594 GT:DP:GQ:MIN_DP:PL 0/0:25:26:23:0,26,710 +chrX 1265595 . A . . END=1265595 GT:DP:GQ:MIN_DP:PL 0/0:26:0:26:0,0,418 +chrX 1265596 . C . . END=1265599 GT:DP:GQ:MIN_DP:PL 0/0:27:63:27:0,63,945 +chrX 1265600 . A . . END=1265600 GT:DP:GQ:MIN_DP:PL 0/0:23:10:23:0,10,640 +chrX 1265601 . C . . END=1265773 GT:DP:GQ:MIN_DP:PL 0/0:48:56:48:0,56,775 +chrX 1265774 . G T, 805.64 . AS_QUALapprox=|813|0;AS_VarDP=26|30|0;BaseQRankSum=0.994;DP=57;MQRankSum=-4.868;QUALapprox=813;RAW_GT_COUNT=0,1,0;RAW_MQandDP=167751,57;ReadPosRankSum=0.427;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:26,30,0:56:99:813,0,640,891,731,1622:14,12,18,12 +chrX 1265775 . T . . END=1266741 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,104,1502 +chrX 1266742 . A G, 692.64 . AS_QUALapprox=|700|0;AS_VarDP=39|28|0;BaseQRankSum=-0.423;DP=70;MQRankSum=0.000;QUALapprox=700;RAW_GT_COUNT=0,1,0;RAW_MQandDP=252000,70;ReadPosRankSum=-0.051;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:39,28,0:67:99:700,0,1073,817,1157,1974:20,19,15,13 +chrX 1266743 . G . . END=1266774 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 1266775 . C T, 627.64 . AS_QUALapprox=|635|0;AS_VarDP=43|25|0;BaseQRankSum=2.138;DP=74;MQRankSum=0.000;QUALapprox=635;RAW_GT_COUNT=0,1,0;RAW_MQandDP=266400,74;ReadPosRankSum=0.579;VarDP=68 GT:AD:DP:GQ:PL:SB 0/1:43,25,0:68:99:635,0,1080,763,1156,1918:19,24,11,14 +chrX 1266776 . G . . END=1266836 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 1266837 . A . . END=1266879 GT:DP:GQ:MIN_DP:PL 0/0:64:0:64:0,0,272 +chrX 1266880 . C . . END=1266880 GT:DP:GQ:MIN_DP:PL 0/0:69:46:69:0,46,1191 +chrX 1266881 . A . . END=1266881 GT:DP:GQ:MIN_DP:PL 0/0:66:0:66:0,0,654 +chrX 1266882 . GGT G, 485.60 . AS_QUALapprox=|493|0;AS_VarDP=23|16|0;BaseQRankSum=0.814;DP=71;MQRankSum=0.000;QUALapprox=493;RAW_GT_COUNT=0,1,0;RAW_MQandDP=253675,71;ReadPosRankSum=0.074;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:23,16,0:39:99:493,0,750,608,855,1664:7,16,6,10 +chrX 1266885 . G . . END=1266930 GT:DP:GQ:MIN_DP:PL 0/0:64:0:64:0,0,367 +chrX 1266931 . G . . END=1267031 GT:DP:GQ:MIN_DP:PL 0/0:53:48:53:0,48,1243 +chrX 1267032 . A . . END=1267032 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,1155 +chrX 1267033 . C . . END=1267040 GT:DP:GQ:MIN_DP:PL 0/0:46:25:43:0,25,1106 +chrX 1267041 . C . . END=1267041 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,1067 +chrX 1267042 . G . . END=1267523 GT:DP:GQ:MIN_DP:PL 0/0:57:35:56:0,35,1216 +chrX 1267524 . C T, 403.64 . AS_QUALapprox=|411|0;AS_VarDP=26|16|0;BaseQRankSum=0.660;DP=45;MQRankSum=0.122;QUALapprox=411;RAW_GT_COUNT=0,1,0;RAW_MQandDP=134527,45;ReadPosRankSum=1.011;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:26,16,0:42:99:411,0,697,488,746,1234:12,14,7,9 +chrX 1267525 . G . . END=1267867 GT:DP:GQ:MIN_DP:PL 0/0:58:28:51:0,28,1153 +chrX 1267868 . C T, 731.64 . AS_QUALapprox=|739|0;AS_VarDP=27|28|0;BaseQRankSum=0.458;DP=56;MQRankSum=-0.492;QUALapprox=739;RAW_GT_COUNT=0,1,0;RAW_MQandDP=197057,56;ReadPosRankSum=2.181;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:27,28,0:55:99:739,0,693,820,776,1596:11,16,14,14 +chrX 1267869 . G . . END=1267934 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,111,1373 +chrX 1267935 . C T, 561.64 . AS_QUALapprox=|569|0;AS_VarDP=25|24|0;BaseQRankSum=0.219;DP=53;MQRankSum=-0.843;QUALapprox=569;RAW_GT_COUNT=0,1,0;RAW_MQandDP=178498,53;ReadPosRankSum=-0.650;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:25,24,0:49:99:569,0,608,643,678,1321:13,12,14,10 +chrX 1267936 . A . . END=1268042 GT:DP:GQ:MIN_DP:PL 0/0:68:62:68:0,62,1691 +chrX 1268043 . C T, 968.64 . AS_QUALapprox=|976|0;AS_VarDP=25|27|0;BaseQRankSum=1.097;DP=52;MQRankSum=-0.654;QUALapprox=976;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147262,52;ReadPosRankSum=-1.044;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,27,0:52:99:0|1:1268043_C_T:976,0,845,1052,927,1978:1268043:10,15,9,18 +chrX 1268044 . G . . END=1268065 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,110,1489 +chrX 1268066 . ATG A, 783.60 . AS_QUALapprox=|791|0;AS_VarDP=25|21|0;BaseQRankSum=-0.739;DP=51;MQRankSum=0.262;QUALapprox=791;RAW_GT_COUNT=0,1,0;RAW_MQandDP=128752,51;ReadPosRankSum=1.707;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,21,0:46:99:0|1:1268043_C_T:791,0,898,867,961,1828:1268043:12,13,8,13 +chrX 1268069 . T . . END=1268128 GT:DP:GQ:MIN_DP:PL 0/0:42:98:42:0,98,1240 +chrX 1268129 . G A, 581.64 . AS_QUALapprox=|589|0;AS_VarDP=20|23|0;BaseQRankSum=-0.315;DP=44;MQRankSum=0.528;QUALapprox=589;RAW_GT_COUNT=0,1,0;RAW_MQandDP=108123,44;ReadPosRankSum=-1.206;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:20,23,0:43:99:589,0,506,649,575,1224:11,9,10,13 +chrX 1268130 . C . . END=1268181 GT:DP:GQ:MIN_DP:PL 0/0:55:93:55:0,93,1435 +chrX 1268182 . A . . END=1268182 GT:DP:GQ:MIN_DP:PL 0/0:58:0:58:0,0,1498 +chrX 1268183 . G . . END=1268247 GT:DP:GQ:MIN_DP:PL 0/0:56:46:56:0,46,1125 +chrX 1268248 . A . . END=1268249 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,0 +chrX 1268250 . T . . END=1268253 GT:DP:GQ:MIN_DP:PL 0/0:54:84:54:0,84,1260 +chrX 1268254 . C . . END=1268268 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,0 +chrX 1268269 . G . . END=1268269 GT:DP:GQ:MIN_DP:PL 0/0:43:84:43:0,84,1260 +chrX 1268270 . T . . END=1268270 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,525 +chrX 1268271 . G . . END=1268271 GT:DP:GQ:MIN_DP:PL 0/0:43:84:43:0,84,1260 +chrX 1268272 . C . . END=1268274 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,400 +chrX 1268275 . A . . END=1268275 GT:DP:GQ:MIN_DP:PL 0/0:42:84:42:0,84,1260 +chrX 1268276 . T . . END=1268276 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,615 +chrX 1268277 . G . . END=1268277 GT:DP:GQ:MIN_DP:PL 0/0:44:93:44:0,93,1395 +chrX 1268278 . T . . END=1268279 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,611 +chrX 1268280 . T . . END=1268283 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,99,1485 +chrX 1268284 . C . . END=1268286 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,674 +chrX 1268287 . A . . END=1268287 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,102,1530 +chrX 1268288 . T . . END=1268290 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,614 +chrX 1268291 . G . . END=1268296 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,99,1485 +chrX 1268297 . A . . END=1268302 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,782 +chrX 1268303 . G . . END=1268306 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,117,1755 +chrX 1268307 . A . . END=1268307 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,905 +chrX 1268308 . T . . END=1268310 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,113,1369 +chrX 1268311 . C . . END=1268314 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,786 +chrX 1268315 . G . . END=1268317 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,114,1710 +chrX 1268318 . C . . END=1268328 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,931 +chrX 1268329 . G . . END=1268376 GT:DP:GQ:MIN_DP:PL 0/0:39:52:39:0,52,1006 +chrX 1268377 . C . . END=1268377 GT:DP:GQ:MIN_DP:PL 0/0:41:19:41:0,19,1106 +chrX 1268378 . A . . END=1268379 GT:DP:GQ:MIN_DP:PL 0/0:42:22:42:0,22,1106 +chrX 1268380 . A . . END=1268385 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,856 +chrX 1268386 . ATATGTGTGCAGG A, 15.59 . AS_QUALapprox=|23|0;AS_VarDP=23|3|0;BaseQRankSum=-3.081;DP=27;MQRankSum=-3.677;QUALapprox=23;RAW_GT_COUNT=0,1,0;RAW_MQandDP=88747,27;ReadPosRankSum=0.524;VarDP=26 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,3,0:26:23:0|1:1268386_ATATGTGTGCAGG_A:23,0,890,91,898,990:1268386:9,14,1,2 +chrX 1268399 . T . . END=1268409 GT:DP:GQ:MIN_DP:PL 0/0:24:54:24:0,54,810 +chrX 1268410 . A G, 18.64 . AS_QUALapprox=|26|0;AS_VarDP=22|3|0;BaseQRankSum=-2.890;DP=25;MQRankSum=-4.816;QUALapprox=26;RAW_GT_COUNT=0,1,0;RAW_MQandDP=84537,25;ReadPosRankSum=0.743;VarDP=25 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,3,0:25:26:0|1:1268386_ATATGTGTGCAGG_A:26,0,880,91,888,980:1268386:9,13,1,2 +chrX 1268411 . T . . END=1268438 GT:DP:GQ:MIN_DP:PL 0/0:18:29:18:0,29,495 +chrX 1268439 . C T, 20.64 . AS_QUALapprox=|28|0;AS_VarDP=19|2|0;BaseQRankSum=-0.927;DP=22;MQRankSum=-4.354;QUALapprox=28;RAW_GT_COUNT=0,1,0;RAW_MQandDP=76608,22;ReadPosRankSum=0.252;VarDP=21 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:19,2,0:21:28:0|1:1268386_ATATGTGTGCAGG_A:28,0,654,84,660,744:1268386:8,11,1,1 +chrX 1268440 . G . . END=1268443 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,103 +chrX 1268444 . T . . END=1268445 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,102,1530 +chrX 1268446 . T . . END=1268452 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,192 +chrX 1268453 . G . . END=1268457 GT:DP:GQ:MIN_DP:PL 0/0:39:58:39:0,58,1126 +chrX 1268458 . T . . END=1268459 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,343 +chrX 1268460 . G . . END=1268461 GT:DP:GQ:MIN_DP:PL 0/0:39:73:39:0,73,1097 +chrX 1268462 . G . . END=1268462 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,214 +chrX 1268463 . A . . END=1268466 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,105,1210 +chrX 1268467 . G . . END=1268467 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,163 +chrX 1268468 . T . . END=1268479 GT:DP:GQ:MIN_DP:PL 0/0:40:63:40:0,63,945 +chrX 1268480 . T . . END=1268481 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,88 +chrX 1268482 . T . . END=1268953 GT:DP:GQ:MIN_DP:PL 0/0:46:25:46:0,25,1191 +chrX 1268954 . C G, 925.64 . AS_QUALapprox=|933|0;AS_VarDP=29|34|0;BaseQRankSum=0.755;DP=66;MQRankSum=0.000;QUALapprox=933;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=-2.014;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:29,34,0:63:99:933,0,719,1020,821,1841:17,12,19,15 +chrX 1268955 . G . . END=1269338 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 1269339 . G A, 661.64 . AS_QUALapprox=|669|0;AS_VarDP=32|26|0;BaseQRankSum=-1.738;DP=61;MQRankSum=0.936;QUALapprox=669;RAW_GT_COUNT=0,1,0;RAW_MQandDP=218809,61;ReadPosRankSum=-0.696;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:32,26,0:58:99:669,0,903,764,981,1746:21,11,9,17 +chrX 1269340 . G . . END=1269383 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1269384 . A G, 792.64 . AS_QUALapprox=|800|0;AS_VarDP=32|30|0;BaseQRankSum=1.336;DP=64;MQRankSum=0.000;QUALapprox=800;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=0.775;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:32,30,0:62:99:800,0,836,896,926,1822:23,9,11,19 +chrX 1269385 . C . . END=1269412 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 1269413 . C G, 683.64 . AS_QUALapprox=|691|0;AS_VarDP=31|25|0;BaseQRankSum=2.430;DP=58;MQRankSum=0.000;QUALapprox=691;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=0.519;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:31,25,0:56:99:691,0,804,784,879,1663:21,10,10,15 +chrX 1269414 . A . . END=1269508 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,113,1554 +chrX 1269509 . C G, 506.64 . AS_QUALapprox=|514|0;AS_VarDP=27|20|0;BaseQRankSum=-0.820;DP=48;MQRankSum=0.904;QUALapprox=514;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172336,48;ReadPosRankSum=0.926;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:27,20,0:47:99:514,0,767,595,827,1422:11,16,9,11 +chrX 1269510 . C . . END=1269590 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,113,1498 +chrX 1269591 . C T, 573.64 . AS_QUALapprox=|581|0;AS_VarDP=27|24|0;BaseQRankSum=0.120;DP=54;MQRankSum=1.375;QUALapprox=581;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190272,54;ReadPosRankSum=-1.114;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:27,24,0:51:99:581,0,623,660,695,1355:8,19,12,12 +chrX 1269592 . C . . END=1269629 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,104,1314 +chrX 1269630 . AG A, 847.60 . AS_QUALapprox=|855|0;AS_VarDP=27|23|0;BaseQRankSum=-0.592;DP=53;MQRankSum=-0.115;QUALapprox=855;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187652,53;ReadPosRankSum=-0.060;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,23,0:50:99:0|1:1269630_AG_A:855,0,1022,937,1091,2028:1269630:11,16,10,13 +chrX 1269632 . A . . END=1269641 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,111,1665 +chrX 1269642 . A G, 883.64 . AS_QUALapprox=|891|0;AS_VarDP=25|23|0;BaseQRankSum=-0.577;DP=48;MQRankSum=-1.001;QUALapprox=891;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172116,48;ReadPosRankSum=-0.096;VarDP=48 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,23,0:48:99:0|1:1269630_AG_A:891,0,975,966,1044,2010:1269630:11,14,10,13 +chrX 1269643 . A . . END=1269645 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,105,1575 +chrX 1269646 . AGAGAT A, 880.60 . AS_QUALapprox=|888|0;AS_VarDP=26|23|0;BaseQRankSum=-0.271;DP=50;MQRankSum=-1.022;QUALapprox=888;RAW_GT_COUNT=0,1,0;RAW_MQandDP=179316,50;ReadPosRankSum=1.165;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,23,0:49:99:0|1:1269630_AG_A:888,0,1012,966,1081,2047:1269630:13,13,10,13 +chrX 1269652 . G . . END=1270167 GT:DP:GQ:MIN_DP:PL 0/0:53:92:53:0,92,1394 +chrX 1270168 . A T, 483.64 . AS_QUALapprox=|491|0;AS_VarDP=40|20|0;BaseQRankSum=1.275;DP=61;MQRankSum=0.000;QUALapprox=491;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=1.812;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:40,20,0:60:99:491,0,1111,610,1171,1781:18,22,10,10 +chrX 1270169 . C . . END=1270242 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 1270243 . T TA, 472.60 . AS_QUALapprox=|480|0;AS_VarDP=37|17|0;BaseQRankSum=0.408;DP=59;MQRankSum=0.000;QUALapprox=480;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-0.820;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:37,17,0:54:99:480,0,1269,591,1320,1912:17,20,11,6 +chrX 1270244 . T . . END=1270356 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1270357 . G T, 1113.64 . AS_QUALapprox=|1121|0;AS_VarDP=32|29|0;BaseQRankSum=-0.791;DP=63;MQRankSum=-1.018;QUALapprox=1121;RAW_GT_COUNT=0,1,0;RAW_MQandDP=225601,63;ReadPosRankSum=0.637;VarDP=61 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:32,29,0:61:99:0|1:1270357_G_T:1121,0,1245,1218,1332,2550:1270357:13,19,14,15 +chrX 1270358 . G . . END=1270359 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1270360 . C T, 1116.64 . AS_QUALapprox=|1124|0;AS_VarDP=31|29|0;BaseQRankSum=-0.434;DP=61;MQRankSum=-1.001;QUALapprox=1124;RAW_GT_COUNT=0,1,0;RAW_MQandDP=218401,61;ReadPosRankSum=0.215;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:31,29,0:60:99:0|1:1270357_G_T:1124,0,1214,1218,1302,2519:1270357:13,18,14,15 +chrX 1270361 . T . . END=1270363 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 1270364 . C T, 1077.64 . AS_QUALapprox=|1085|0;AS_VarDP=30|28|0;BaseQRankSum=-1.036;DP=60;MQRankSum=0.000;QUALapprox=1085;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=0.436;VarDP=58 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:30,28,0:58:99:0|1:1270357_G_T:1085,0,1175,1176,1260,2435:1270357:13,17,14,14 +chrX 1270365 . G . . END=1270446 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1270447 . C T, 779.64 . AS_QUALapprox=|787|0;AS_VarDP=29|31|0;BaseQRankSum=-0.253;DP=64;MQRankSum=0.000;QUALapprox=787;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=-0.385;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:29,31,0:60:99:787,0,723,874,816,1690:16,13,16,15 +chrX 1270448 . G . . END=1270477 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 1270478 . A G, 972.64 . AS_QUALapprox=|980|0;AS_VarDP=30|26|0;BaseQRankSum=-0.381;DP=58;MQRankSum=0.000;QUALapprox=980;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=0.534;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:30,26,0:56:99:0|1:1270478_A_G:980,0,1160,1070,1238,2308:1270478:17,13,12,14 +chrX 1270479 . T . . END=1270488 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1270489 . C T, 902.64 . AS_QUALapprox=|910|0;AS_VarDP=32|24|0;BaseQRankSum=0.341;DP=59;MQRankSum=0.000;QUALapprox=910;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=0.764;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:32,24,0:56:99:0|1:1270478_A_G:910,0,1218,1006,1290,2296:1270478:18,14,12,12 +chrX 1270490 . C . . END=1270578 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1270579 . T C, 344.64 . AS_QUALapprox=|352|0;AS_VarDP=30|18|0;BaseQRankSum=-2.117;DP=52;MQRankSum=0.000;QUALapprox=352;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=-1.502;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:30,18,0:48:99:352,0,845,442,898,1340:20,10,7,11 +chrX 1270580 . G . . END=1270684 GT:DP:GQ:MIN_DP:PL 0/0:48:88:48:0,88,1375 +chrX 1270685 . A G, 527.64 . AS_QUALapprox=|535|0;AS_VarDP=20|20|0;BaseQRankSum=-0.853;DP=45;MQRankSum=0.000;QUALapprox=535;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=0.081;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:20,20,0:40:99:535,0,555,595,615,1210:10,10,6,14 +chrX 1270686 . G . . END=1270751 GT:DP:GQ:MIN_DP:PL 0/0:39:93:39:0,93,1266 +chrX 1270752 . T A, 279.64 . AS_QUALapprox=|287|0;AS_VarDP=31|12|0;BaseQRankSum=1.318;DP=56;MQRankSum=0.000;QUALapprox=287;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-0.014;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:31,12,0:43:99:287,0,908,380,944,1324:13,18,3,9 +chrX 1270753 . A . . END=1270856 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,105,1375 +chrX 1270857 . G T, 37.64 . AS_QUALapprox=|45|0;AS_VarDP=38|5|0;BaseQRankSum=1.313;DP=52;MQRankSum=0.000;QUALapprox=45;RAW_GT_COUNT=0,1,0;RAW_MQandDP=184624,52;ReadPosRankSum=0.000;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:38,5,0:43:45:45,0,1058,159,1074,1232:16,22,1,4 +chrX 1270858 . G . . END=1270911 GT:DP:GQ:MIN_DP:PL 0/0:35:39:27:0,39,829 +chrX 1270912 . G . . END=1270913 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,610 +chrX 1270914 . C . . END=1270917 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,120,1800 +chrX 1270918 . T . . END=1270918 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,625 +chrX 1270919 . G . . END=1271157 GT:DP:GQ:MIN_DP:PL 0/0:46:20:46:0,20,1220 +chrX 1271158 . C G, 595.64 . AS_QUALapprox=|603|0;AS_VarDP=25|24|0;BaseQRankSum=-0.814;DP=53;MQRankSum=-1.429;QUALapprox=603;RAW_GT_COUNT=0,1,0;RAW_MQandDP=186066,53;ReadPosRankSum=0.370;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:25,24,0:49:99:603,0,682,678,754,1432:18,7,17,7 +chrX 1271159 . A . . END=1271187 GT:DP:GQ:MIN_DP:PL 0/0:42:93:42:0,93,1157 +chrX 1271188 . C T, 571.64 . AS_QUALapprox=|579|0;AS_VarDP=21|17|0;BaseQRankSum=1.792;DP=40;MQRankSum=-1.555;QUALapprox=579;RAW_GT_COUNT=0,1,0;RAW_MQandDP=139266,40;ReadPosRankSum=0.382;VarDP=38 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,17,0:38:99:0|1:1271188_C_T:579,0,810,643,861,1504:1271188:15,6,11,6 +chrX 1271189 . G . . END=1271209 GT:DP:GQ:MIN_DP:PL 0/0:33:84:33:0,84,948 +chrX 1271210 . G T, 388.64 . AS_QUALapprox=|396|0;AS_VarDP=22|11|0;BaseQRankSum=1.579;DP=33;MQRankSum=-1.985;QUALapprox=396;RAW_GT_COUNT=0,1,0;RAW_MQandDP=114066,33;ReadPosRankSum=0.537;VarDP=33 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,11,0:33:99:0|1:1271188_C_T:396,0,891,462,924,1386:1271188:15,7,7,4 +chrX 1271211 . G . . END=1271212 GT:DP:GQ:MIN_DP:PL 0/0:32:84:32:0,84,1260 +chrX 1271213 . AG A, 385.60 . AS_QUALapprox=|393|0;AS_VarDP=23|11|0;BaseQRankSum=1.377;DP=34;MQRankSum=-2.031;QUALapprox=393;RAW_GT_COUNT=0,1,0;RAW_MQandDP=117666,34;ReadPosRankSum=0.589;VarDP=34 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,11,0:34:99:0|1:1271188_C_T:393,0,933,462,966,1428:1271188:16,7,7,4 +chrX 1271215 . T . . END=1271217 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1350 +chrX 1271218 . C T, 382.64 . AS_QUALapprox=|390|0;AS_VarDP=24|11|0;BaseQRankSum=2.049;DP=35;MQRankSum=-1.317;QUALapprox=390;RAW_GT_COUNT=0,1,0;RAW_MQandDP=119266,35;ReadPosRankSum=0.055;VarDP=35 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,11,0:35:99:0|1:1271188_C_T:390,0,975,462,1008,1470:1271188:16,8,7,4 +chrX 1271219 . G . . END=1271220 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +chrX 1271221 . G A, 385.64 . AS_QUALapprox=|393|0;AS_VarDP=23|11|0;BaseQRankSum=1.119;DP=34;MQRankSum=-1.272;QUALapprox=393;RAW_GT_COUNT=0,1,0;RAW_MQandDP=115666,34;ReadPosRankSum=0.137;VarDP=34 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,11,0:34:99:0|1:1271188_C_T:393,0,933,462,966,1428:1271188:15,8,7,4 +chrX 1271222 . A . . END=1271226 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +chrX 1271227 . T C, 295.64 . AS_QUALapprox=|303|0;AS_VarDP=25|9|0;BaseQRankSum=1.493;DP=34;MQRankSum=-1.586;QUALapprox=303;RAW_GT_COUNT=0,1,0;RAW_MQandDP=115666,34;ReadPosRankSum=0.202;VarDP=34 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,9,0:34:99:0|1:1271188_C_T:303,0,1023,378,1050,1428:1271188:15,10,6,3 +chrX 1271228 . G A, 295.64 . AS_QUALapprox=|303|0;AS_VarDP=25|9|0;BaseQRankSum=0.000;DP=34;MQRankSum=-1.586;QUALapprox=303;RAW_GT_COUNT=0,1,0;RAW_MQandDP=115666,34;ReadPosRankSum=-0.101;VarDP=34 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,9,0:34:99:0|1:1271188_C_T:303,0,1023,378,1050,1428:1271188:15,10,6,3 +chrX 1271229 . C . . END=1271233 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1072 +chrX 1271234 . C T, 292.64 . AS_QUALapprox=|300|0;AS_VarDP=26|9|0;BaseQRankSum=1.442;DP=35;MQRankSum=-0.868;QUALapprox=300;RAW_GT_COUNT=0,1,0;RAW_MQandDP=118148,35;ReadPosRankSum=-0.996;VarDP=35 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,9,0:35:99:0|1:1271188_C_T:300,0,1065,378,1092,1470:1271188:15,11,6,3 +chrX 1271235 . G . . END=1271243 GT:DP:GQ:MIN_DP:PL 0/0:34:80:34:0,80,1067 +chrX 1271244 . G A, 289.64 . AS_QUALapprox=|297|0;AS_VarDP=27|9|0;BaseQRankSum=1.389;DP=36;MQRankSum=-0.591;QUALapprox=297;RAW_GT_COUNT=0,1,0;RAW_MQandDP=119748,36;ReadPosRankSum=-1.300;VarDP=36 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,9,0:36:99:0|1:1271188_C_T:297,0,1107,378,1134,1512:1271188:16,11,6,3 +chrX 1271245 . C . . END=1271249 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +chrX 1271250 . T C, 166.64 . AS_QUALapprox=|174|0;AS_VarDP=26|6|0;BaseQRankSum=0.896;DP=32;MQRankSum=-1.099;QUALapprox=174;RAW_GT_COUNT=0,1,0;RAW_MQandDP=105348,32;ReadPosRankSum=-1.256;VarDP=32 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,6,0:32:99:0|1:1271188_C_T:174,0,1074,252,1092,1344:1271188:15,11,3,3 +chrX 1271251 . G . . END=1271271 GT:DP:GQ:MIN_DP:PL 0/0:30:56:30:0,56,829 +chrX 1271272 . C A, 133.64 . AS_QUALapprox=|141|0;AS_VarDP=23|5|0;BaseQRankSum=-0.052;DP=29;MQRankSum=-1.212;QUALapprox=141;RAW_GT_COUNT=0,1,0;RAW_MQandDP=94548,29;ReadPosRankSum=-2.370;VarDP=28 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,5,0:28:99:0|1:1271188_C_T:141,0,951,210,966,1176:1271188:13,10,3,2 +chrX 1271273 . T . . END=1271273 GT:DP:GQ:MIN_DP:PL 0/0:25:63:25:0,63,945 +chrX 1271274 . C T, 49.64 . AS_QUALapprox=|57|0;AS_VarDP=23|3|0;BaseQRankSum=-0.480;DP=27;MQRankSum=-0.817;QUALapprox=57;RAW_GT_COUNT=0,1,0;RAW_MQandDP=88923,27;ReadPosRankSum=-2.596;VarDP=26 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,3,0:26:57:0|1:1271188_C_T:57,0,957,126,966,1092:1271188:13,10,2,1 +chrX 1271275 . A . . END=1271317 GT:DP:GQ:MIN_DP:PL 0/0:17:26:16:0,26,450 +chrX 1271318 . C . . END=1271318 GT:DP:GQ:MIN_DP:PL 0/0:17:16:17:0,16,451 +chrX 1271319 . G . . END=1271319 GT:DP:GQ:MIN_DP:PL 0/0:16:23:16:0,23,447 +chrX 1271320 . G . . END=1271321 GT:DP:GQ:MIN_DP:PL 0/0:17:10:17:0,10,412 +chrX 1271322 . T . . END=1271323 GT:DP:GQ:MIN_DP:PL 0/0:18:36:18:0,36,540 +chrX 1271324 . A . . END=1271327 GT:DP:GQ:MIN_DP:PL 0/0:19:0:19:0,0,432 +chrX 1271328 . T . . END=1271328 GT:DP:GQ:MIN_DP:PL 0/0:20:39:20:0,39,585 +chrX 1271329 . T . . END=1271332 GT:DP:GQ:MIN_DP:PL 0/0:20:0:20:0,0,337 +chrX 1271333 . T . . END=1271333 GT:DP:GQ:MIN_DP:PL 0/0:21:33:21:0,33,495 +chrX 1271334 . T . . END=1271336 GT:DP:GQ:MIN_DP:PL 0/0:22:0:22:0,0,575 +chrX 1271337 . T . . END=1271337 GT:DP:GQ:MIN_DP:PL 0/0:21:36:21:0,36,540 +chrX 1271338 . T . . END=1271341 GT:DP:GQ:MIN_DP:PL 0/0:20:0:20:0,0,338 +chrX 1271342 . T . . END=1271342 GT:DP:GQ:MIN_DP:PL 0/0:20:25:20:0,25,626 +chrX 1271343 . T . . END=1271350 GT:DP:GQ:MIN_DP:PL 0/0:22:0:22:0,0,258 +chrX 1271351 . T . . END=1271353 GT:DP:GQ:MIN_DP:PL 0/0:24:30:23:0,30,630 +chrX 1271354 . T . . END=1271355 GT:DP:GQ:MIN_DP:PL 0/0:24:0:24:0,0,303 +chrX 1271356 . T . . END=1271356 GT:DP:GQ:MIN_DP:PL 0/0:24:37:24:0,37,755 +chrX 1271357 . G . . END=1271358 GT:DP:GQ:MIN_DP:PL 0/0:24:0:24:0,0,313 +chrX 1271359 . A . . END=1271360 GT:DP:GQ:MIN_DP:PL 0/0:23:34:23:0,34,690 +chrX 1271361 . A . . END=1271362 GT:DP:GQ:MIN_DP:PL 0/0:24:3:24:0,3,655 +chrX 1271363 . A . . END=1271364 GT:DP:GQ:MIN_DP:PL 0/0:25:40:25:0,40,790 +chrX 1271365 . C . . END=1271365 GT:DP:GQ:MIN_DP:PL 0/0:25:0:25:0,0,33 +chrX 1271366 . G . . END=1271366 GT:DP:GQ:MIN_DP:PL 0/0:25:40:25:0,40,780 +chrX 1271367 . T . . END=1271368 GT:DP:GQ:MIN_DP:PL 0/0:28:12:28:0,12,790 +chrX 1271369 . T . . END=1271371 GT:DP:GQ:MIN_DP:PL 0/0:29:62:29:0,62,894 +chrX 1271372 . C . . END=1271373 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,0 +chrX 1271374 . C . . END=1271395 GT:DP:GQ:MIN_DP:PL 0/0:40:50:40:0,50,948 +chrX 1271396 . G . . END=1271396 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,0 +chrX 1271397 . T . . END=1271409 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,120,1800 +chrX 1271410 . G . . END=1271410 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,0 +chrX 1271411 . C . . END=1271576 GT:DP:GQ:MIN_DP:PL 0/0:61:74:61:0,74,1563 +chrX 1271577 . T C, 784.64 . AS_QUALapprox=|792|0;AS_VarDP=34|31|0;BaseQRankSum=0.520;DP=70;MQRankSum=0.986;QUALapprox=792;RAW_GT_COUNT=0,1,0;RAW_MQandDP=250516,70;ReadPosRankSum=-0.637;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:34,31,0:65:99:792,0,897,895,990,1884:20,14,21,10 +chrX 1271578 . G . . END=1271811 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,107,1800 +chrX 1271812 . C T, 873.64 . AS_QUALapprox=|881|0;AS_VarDP=35|32|0;BaseQRankSum=2.833;DP=69;MQRankSum=0.000;QUALapprox=881;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=0.603;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:35,32,0:67:99:881,0,875,985,971,1956:17,18,11,21 +chrX 1271813 . G . . END=1272088 GT:DP:GQ:MIN_DP:PL 0/0:62:82:62:0,82,1469 +chrX 1272089 . G T, 1247.64 . AS_QUALapprox=|1255|0;AS_VarDP=29|32|0;BaseQRankSum=-0.573;DP=62;MQRankSum=0.000;QUALapprox=1255;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=-0.816;VarDP=61 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,32,0:61:99:0|1:1272089_G_T:1255,0,1109,1342,1205,2548:1272089:14,15,18,14 +chrX 1272090 . A . . END=1272096 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 1272097 . G A, 1241.64 . AS_QUALapprox=|1249|0;AS_VarDP=31|32|0;BaseQRankSum=-0.098;DP=66;MQRankSum=0.000;QUALapprox=1249;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=-0.523;VarDP=63 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:31,32,0:63:99:0|1:1272089_G_T:1249,0,1163,1342,1259,2601:1272089:14,17,18,14 +chrX 1272098 . C . . END=1272145 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,101,1509 +chrX 1272146 . G A, 527.64 . AS_QUALapprox=|535|0;AS_VarDP=34|21|0;BaseQRankSum=1.099;DP=58;MQRankSum=0.823;QUALapprox=535;RAW_GT_COUNT=0,1,0;RAW_MQandDP=206800,58;ReadPosRankSum=0.295;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:34,21,0:55:99:535,0,912,637,975,1612:15,19,8,13 +chrX 1272147 . T . . END=1272184 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1272185 . C T, 489.64 . AS_QUALapprox=|497|0;AS_VarDP=36|19|0;BaseQRankSum=2.669;DP=56;MQRankSum=0.765;QUALapprox=497;RAW_GT_COUNT=0,1,0;RAW_MQandDP=199600,56;ReadPosRankSum=1.478;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:36,19,0:55:99:497,0,932,603,989,1592:17,19,10,9 +chrX 1272186 . T . . END=1272354 GT:DP:GQ:MIN_DP:PL 0/0:50:80:50:0,80,1176 +chrX 1272355 . G GA, 541.60 . AS_QUALapprox=|549|0;AS_VarDP=22|19|0;BaseQRankSum=0.978;DP=44;MQRankSum=0.000;QUALapprox=549;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=-1.648;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:22,19,0:41:99:549,0,655,616,712,1327:11,11,7,12 +chrX 1272356 . A . . END=1272380 GT:DP:GQ:MIN_DP:PL 0/0:41:93:41:0,93,1395 +chrX 1272381 . C CA, 274.60 . AS_QUALapprox=|282|0;AS_VarDP=24|15|0;BaseQRankSum=-0.098;DP=44;MQRankSum=0.000;QUALapprox=282;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=-0.029;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:24,15,0:39:99:282,0,549,354,594,948:11,13,5,10 +chrX 1272382 . A . . END=1272451 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,117,1478 +chrX 1272452 . C A, 628.64 . AS_QUALapprox=|636|0;AS_VarDP=25|23|0;BaseQRankSum=2.004;DP=53;MQRankSum=0.000;QUALapprox=636;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=-0.454;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:25,23,0:48:99:636,0,630,710,699,1409:10,15,11,12 +chrX 1272453 . G . . END=1272473 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 1272474 . CTTTAT C, 854.60 . AS_QUALapprox=|862|0;AS_VarDP=24|23|0;BaseQRankSum=0.950;DP=61;MQRankSum=0.000;QUALapprox=862;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=1.072;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:24,23,0:47:99:862,0,914,934,983,1917:12,12,15,8 +chrX 1272480 . T . . END=1272800 GT:DP:GQ:MIN_DP:PL 0/0:52:76:52:0,76,1249 +chrX 1272801 . CT C, 664.60 . AS_QUALapprox=|672|0;AS_VarDP=28|18|0;BaseQRankSum=0.676;DP=54;MQRankSum=-1.751;QUALapprox=672;RAW_GT_COUNT=0,1,0;RAW_MQandDP=191936,54;ReadPosRankSum=-0.324;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,18,0:46:99:0|1:1272801_CT_C:672,0,1121,756,1176,1932:1272801:15,13,6,12 +chrX 1272803 . T . . END=1272814 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,100,1448 +chrX 1272815 . T C, 990.64 . AS_QUALapprox=|998|0;AS_VarDP=29|26|0;BaseQRankSum=-1.847;DP=56;MQRankSum=-1.481;QUALapprox=998;RAW_GT_COUNT=0,1,0;RAW_MQandDP=199136,56;ReadPosRankSum=-1.141;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,26,0:55:99:0|1:1272801_CT_C:998,0,1131,1085,1210,2295:1272801:15,14,10,16 +chrX 1272816 . T . . END=1272824 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 1272825 . CTT C, 1002.60 . AS_QUALapprox=|1010|0;AS_VarDP=34|27|0;BaseQRankSum=0.833;DP=62;MQRankSum=-1.577;QUALapprox=1010;RAW_GT_COUNT=0,1,0;RAW_MQandDP=220736,62;ReadPosRankSum=-0.235;VarDP=61 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:34,27,0:61:99:0|1:1272801_CT_C:1010,0,1244,1112,1325,2437:1272801:18,16,12,15 +chrX 1272828 . T . . END=1272852 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,105,1399 +chrX 1272853 . T C, 587.64 . AS_QUALapprox=|595|0;AS_VarDP=28|25|0;BaseQRankSum=-2.128;DP=53;MQRankSum=-1.021;QUALapprox=595;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190336,53;ReadPosRankSum=0.098;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:28,25,0:53:99:595,0,774,679,849,1528:13,15,14,11 +chrX 1272854 . T . . END=1272904 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1469 +chrX 1272905 . A G, 471.64 . AS_QUALapprox=|479|0;AS_VarDP=28|23|0;BaseQRankSum=-0.537;DP=54;MQRankSum=0.000;QUALapprox=479;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=-0.493;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:28,23,0:51:99:479,0,643,561,710,1271:13,15,13,10 +chrX 1272906 . C . . END=1273124 GT:DP:GQ:MIN_DP:PL 0/0:52:35:48:0,35,1270 +chrX 1273125 . CT C, 634.60 . AS_QUALapprox=|642|0;AS_VarDP=30|26|0;BaseQRankSum=-1.618;DP=63;MQRankSum=0.000;QUALapprox=642;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=0.242;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:30,26,0:56:99:642,0,761,733,840,1572:15,15,11,15 +chrX 1273127 . T . . END=1273450 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,113,1627 +chrX 1273451 . G A, 1356.64 . AS_QUALapprox=|1364|0;AS_VarDP=35|36|0;BaseQRankSum=0.683;DP=73;MQRankSum=0.000;QUALapprox=1364;RAW_GT_COUNT=0,1,0;RAW_MQandDP=262800,73;ReadPosRankSum=0.035;VarDP=71 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:35,36,0:71:99:0|1:1273451_G_A:1364,0,1310,1469,1418,2888:1273451:21,14,19,17 +chrX 1273452 . T . . END=1273463 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1273464 . G A, 1309.64 . AS_QUALapprox=|1317|0;AS_VarDP=33|34|0;BaseQRankSum=0.061;DP=69;MQRankSum=0.000;QUALapprox=1317;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=0.100;VarDP=67 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:33,34,0:67:99:0|1:1273451_G_A:1317,0,1262,1416,1365,2781:1273451:20,13,18,16 +chrX 1273465 . C . . END=1273746 GT:DP:GQ:MIN_DP:PL 0/0:62:78:62:0,78,1555 +chrX 1273747 . AT A, 211.60 . AS_QUALapprox=|219|0;AS_VarDP=24|15|0;BaseQRankSum=0.459;DP=49;MQRankSum=0.276;QUALapprox=219;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169672,49;ReadPosRankSum=-1.083;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:24,15,0:39:99:219,0,897,291,942,1232:11,13,9,6 +chrX 1273749 . T . . END=1273752 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,108,1620 +chrX 1273753 . T TG, 872.60 . AS_QUALapprox=|880|0;AS_VarDP=25|23|0;BaseQRankSum=-1.537;DP=49;MQRankSum=-0.420;QUALapprox=880;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169672,49;ReadPosRankSum=1.394;VarDP=48 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,23,0:48:99:0|1:1273753_T_TG:880,0,944,955,1014,1969:1273753:11,14,11,12 +chrX 1273754 . T . . END=1273758 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,108,1620 +chrX 1273759 . T G, 886.64 . AS_QUALapprox=|894|0;AS_VarDP=24|23|0;BaseQRankSum=-0.611;DP=47;MQRankSum=-0.361;QUALapprox=894;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162472,47;ReadPosRankSum=1.151;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,23,0:47:99:0|1:1273753_T_TG:894,0,915,966,984,1950:1273753:11,13,12,11 +chrX 1273760 . T . . END=1273766 GT:DP:GQ:MIN_DP:PL 0/0:44:22:42:0,22,1201 +chrX 1273767 . A T, 934.64 . AS_QUALapprox=|942|0;AS_VarDP=22|24|0;BaseQRankSum=2.984;DP=46;MQRankSum=-0.176;QUALapprox=942;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158872,46;ReadPosRankSum=0.418;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,24,0:46:99:0|1:1273753_T_TG:942,0,852,1008,924,1932:1273753:10,12,13,11 +chrX 1273768 . T . . END=1273769 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,102,1530 +chrX 1273770 . T TG, 930.60 . AS_QUALapprox=|938|0;AS_VarDP=23|24|0;BaseQRankSum=-0.968;DP=49;MQRankSum=-0.241;QUALapprox=938;RAW_GT_COUNT=0,1,0;RAW_MQandDP=167672,49;ReadPosRankSum=0.564;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,24,0:47:99:0|1:1273753_T_TG:938,0,876,1008,948,1956:1273753:10,13,13,11 +chrX 1273771 . T . . END=1273828 GT:DP:GQ:MIN_DP:PL 0/0:43:86:43:0,86,1136 +chrX 1273829 . G A, 774.64 . AS_QUALapprox=|782|0;AS_VarDP=15|30|0;BaseQRankSum=-1.079;DP=46;MQRankSum=-1.439;QUALapprox=782;RAW_GT_COUNT=0,1,0;RAW_MQandDP=161108,46;ReadPosRankSum=0.229;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:15,30,0:45:99:782,0,367,828,456,1284:5,10,19,11 +chrX 1273830 . C . . END=1273857 GT:DP:GQ:MIN_DP:PL 0/0:43:95:43:0,95,1330 +chrX 1273858 . G A, 774.64 . AS_QUALapprox=|782|0;AS_VarDP=15|27|0;BaseQRankSum=-1.294;DP=44;MQRankSum=-1.293;QUALapprox=782;RAW_GT_COUNT=0,1,0;RAW_MQandDP=153700,44;ReadPosRankSum=0.342;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:15,27,0:42:99:782,0,395,827,476,1304:5,10,16,11 +chrX 1273859 . A . . END=1273922 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,119,1518 +chrX 1273923 . T G, 695.64 . AS_QUALapprox=|703|0;AS_VarDP=26|26|0;BaseQRankSum=-0.483;DP=54;MQRankSum=0.000;QUALapprox=703;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=-0.568;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:26,26,0:52:99:703,0,728,781,806,1586:17,9,17,9 +chrX 1273924 . T . . END=1274486 GT:DP:GQ:MIN_DP:PL 0/0:48:73:48:0,73,1106 +chrX 1274487 . G . . END=1274487 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,1057 +chrX 1274488 . C . . END=1274506 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,103,1373 +chrX 1274507 . T . . END=1274507 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,1012 +chrX 1274508 . A . . END=1274512 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,120,1800 +chrX 1274513 . C . . END=1274514 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,824 +chrX 1274515 . G . . END=1274521 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 1274522 . A . . END=1274522 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,978 +chrX 1274523 . C . . END=1274525 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,104,1523 +chrX 1274526 . T . . END=1274526 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,977 +chrX 1274527 . G . . END=1274536 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 1274537 . A . . END=1274537 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,877 +chrX 1274538 . T . . END=1274541 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,118,1583 +chrX 1274542 . C . . END=1274542 GT:DP:GQ:MIN_DP:PL 0/0:52:0:52:0,0,952 +chrX 1274543 . T . . END=1274544 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 1274545 . G . . END=1274545 GT:DP:GQ:MIN_DP:PL 0/0:53:0:53:0,0,968 +chrX 1274546 . A . . END=1274559 GT:DP:GQ:MIN_DP:PL 0/0:57:94:57:0,94,1519 +chrX 1274560 . A . . END=1274561 GT:DP:GQ:MIN_DP:PL 0/0:61:0:61:0,0,866 +chrX 1274562 . T . . END=1274562 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1274563 . G A, 31.64 . AS_QUALapprox=|39|0;AS_VarDP=34|6|0;BaseQRankSum=-1.015;DP=59;MQRankSum=-2.310;QUALapprox=39;RAW_GT_COUNT=0,1,0;RAW_MQandDP=197232,59;ReadPosRankSum=1.213;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:34,6,0:40:39:39,0,992,141,1010,1151:14,20,0,6 +chrX 1274564 . A . . END=1274597 GT:DP:GQ:MIN_DP:PL 0/0:44:38:41:0,38,1181 +chrX 1274598 . T G, 79.64 . AS_QUALapprox=|87|0;AS_VarDP=41|5|0;BaseQRankSum=1.115;DP=64;MQRankSum=-2.794;QUALapprox=87;RAW_GT_COUNT=0,1,0;RAW_MQandDP=217232,64;ReadPosRankSum=-1.066;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:41,5,0:46:87:0|1:1274598_T_G:87,0,1706,210,1722,1932:1274598:20,21,0,5 +chrX 1274599 . A . . END=1274599 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,120,1800 +chrX 1274600 . T C, 76.64 . AS_QUALapprox=|84|0;AS_VarDP=42|5|0;BaseQRankSum=-1.012;DP=61;MQRankSum=-2.829;QUALapprox=84;RAW_GT_COUNT=0,1,0;RAW_MQandDP=213677,61;ReadPosRankSum=-1.289;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:42,5,0:47:84:0|1:1274598_T_G:84,0,1749,210,1764,1974:1274598:21,21,0,5 +chrX 1274601 . A G, 73.64 . AS_QUALapprox=|81|0;AS_VarDP=43|5|0;BaseQRankSum=1.086;DP=62;MQRankSum=-2.864;QUALapprox=81;RAW_GT_COUNT=0,1,0;RAW_MQandDP=217277,62;ReadPosRankSum=-1.382;VarDP=48 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:43,5,0:48:81:0|1:1274598_T_G:81,0,1791,210,1806,2016:1274598:21,22,0,5 +chrX 1274602 . G . . END=1274604 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,120,1800 +chrX 1274605 . G T, 73.64 . AS_QUALapprox=|81|0;AS_VarDP=43|5|0;BaseQRankSum=1.442;DP=62;MQRankSum=-2.864;QUALapprox=81;RAW_GT_COUNT=0,1,0;RAW_MQandDP=217277,62;ReadPosRankSum=-1.689;VarDP=48 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:43,5,0:48:81:0|1:1274598_T_G:81,0,1791,210,1806,2016:1274598:21,22,0,5 +chrX 1274606 . T . . END=1274610 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,120,1800 +chrX 1274611 . C T, 60.64 . AS_QUALapprox=|68|0;AS_VarDP=47|5|0;BaseQRankSum=1.262;DP=66;MQRankSum=-3.001;QUALapprox=68;RAW_GT_COUNT=0,1,0;RAW_MQandDP=231677,66;ReadPosRankSum=-2.022;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:47,5,0:52:68:0|1:1274598_T_G:68,0,1958,210,1974,2183:1274598:24,23,0,5 +chrX 1274612 . ATGG A, 57.60 . AS_QUALapprox=|65|0;AS_VarDP=48|5|0;BaseQRankSum=1.159;DP=68;MQRankSum=-3.034;QUALapprox=65;RAW_GT_COUNT=0,1,0;RAW_MQandDP=238877,68;ReadPosRankSum=-1.817;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:48,5,0:53:65:0|1:1274598_T_G:65,0,2000,210,2016,2225:1274598:25,23,0,5 +chrX 1274616 . C CTTT, 60.60 . AS_QUALapprox=|68|0;AS_VarDP=47|5|0;BaseQRankSum=0.000;DP=67;MQRankSum=-3.001;QUALapprox=68;RAW_GT_COUNT=0,1,0;RAW_MQandDP=235277,67;ReadPosRankSum=-2.091;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:47,5,0:52:68:0|1:1274598_T_G:68,0,1958,210,1974,2183:1274598:24,23,0,5 +chrX 1274617 . G . . END=1274620 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 1274621 . A G, 15.63 . AS_QUALapprox=|23|0;AS_VarDP=48|4|0;BaseQRankSum=1.334;DP=67;MQRankSum=-3.392;QUALapprox=23;RAW_GT_COUNT=0,1,0;RAW_MQandDP=235277,67;ReadPosRankSum=-2.337;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:48,4,0:52:23:0|1:1274598_T_G:23,0,2003,168,2016,2183:1274598:24,24,0,4 +chrX 1274622 . G . . END=1274624 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,117,1755 +chrX 1274625 . C T, 9.65 . AS_QUALapprox=|17|0;AS_VarDP=50|4|0;BaseQRankSum=0.484;DP=70;MQRankSum=-3.465;QUALapprox=17;RAW_GT_COUNT=0,1,0;RAW_MQandDP=246077,70;ReadPosRankSum=-2.979;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:50,4,0:54:17:0|1:1274598_T_G:17,0,2087,168,2099,2267:1274598:25,25,0,4 +chrX 1274626 . TGG T, 9.61 . AS_QUALapprox=|17|0;AS_VarDP=50|4|0;BaseQRankSum=1.125;DP=70;MQRankSum=-3.465;QUALapprox=17;RAW_GT_COUNT=0,1,0;RAW_MQandDP=246077,70;ReadPosRankSum=-2.596;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:50,4,0:54:17:0|1:1274598_T_G:17,0,2087,168,2099,2267:1274598:25,25,0,4 +chrX 1274629 . T . . END=1274635 GT:DP:GQ:MIN_DP:PL 0/0:67:19:67:0,19,2025 +chrX 1274636 . T . . END=1274905 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 1274906 . A G, 775.64 . AS_QUALapprox=|783|0;AS_VarDP=25|30|0;BaseQRankSum=-0.894;DP=64;MQRankSum=0.000;QUALapprox=783;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=-0.795;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:25,30,0:55:99:783,0,649,858,739,1597:12,13,14,16 +chrX 1274907 . T . . END=1275485 GT:DP:GQ:MIN_DP:PL 0/0:49:53:44:0,53,886 +chrX 1275486 . G A, 992.64 . AS_QUALapprox=|1000|0;AS_VarDP=27|38|0;BaseQRankSum=-0.645;DP=67;MQRankSum=0.000;QUALapprox=1000;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=1.065;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:27,38,0:65:99:1000,0,683,1082,797,1879:9,18,20,18 +chrX 1275487 . T . . END=1275606 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1275607 . G A, 1180.64 . AS_QUALapprox=|1188|0;AS_VarDP=28|32|0;BaseQRankSum=1.251;DP=61;MQRankSum=0.000;QUALapprox=1188;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-1.141;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,32,0:60:99:0|1:1275607_G_A:1188,0,1027,1273,1124,2396:1275607:24,4,20,12 +chrX 1275608 . G . . END=1275626 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 1275627 . C T, 1232.64 . AS_QUALapprox=|1240|0;AS_VarDP=28|33|0;BaseQRankSum=1.025;DP=65;MQRankSum=0.000;QUALapprox=1240;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=-0.710;VarDP=61 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,33,0:61:99:0|1:1275607_G_A:1240,0,1024,1324,1124,2448:1275607:22,6,23,10 +chrX 1275628 . G . . END=1276168 GT:DP:GQ:MIN_DP:PL 0/0:65:63:65:0,63,1673 +chrX 1276169 . TTTTG T, 725.60 . AS_QUALapprox=|733|0;AS_VarDP=21|19|0;BaseQRankSum=-0.078;DP=54;MQRankSum=0.000;QUALapprox=733;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=0.800;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:21,19,0:40:99:733,0,801,796,859,1655:12,9,6,13 +chrX 1276174 . T . . END=1276347 GT:DP:GQ:MIN_DP:PL 0/0:54:33:53:0,33,1508 +chrX 1276348 . A . . END=1276348 GT:DP:GQ:MIN_DP:PL 0/0:50:0:50:0,0,1310 +chrX 1276349 . T . . END=1276349 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 1276350 . G . . END=1276350 GT:DP:GQ:MIN_DP:PL 0/0:52:0:52:0,0,1390 +chrX 1276351 . T . . END=1276351 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 1276352 . T . . END=1276352 GT:DP:GQ:MIN_DP:PL 0/0:53:0:53:0,0,1384 +chrX 1276353 . T . . END=1276353 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 1276354 . G . . END=1276354 GT:DP:GQ:MIN_DP:PL 0/0:52:0:52:0,0,1369 +chrX 1276355 . T . . END=1276359 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,111,1665 +chrX 1276360 . A ATATTTATT, 707.60 . AS_QUALapprox=|715|0;AS_VarDP=19|19|0;BaseQRankSum=1.187;DP=49;MQRankSum=0.000;QUALapprox=715;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=-1.271;VarDP=38 GT:AD:DP:GQ:PL:SB 0/1:19,19,0:38:99:715,0,719,773,776,1550:9,10,9,10 +chrX 1276361 . T . . END=1276381 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,108,1574 +chrX 1276382 . T . . END=1276382 GT:DP:GQ:MIN_DP:PL 0/0:50:0:50:0,0,1271 +chrX 1276383 . T . . END=1276383 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 1276384 . A . . END=1276386 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1212 +chrX 1276387 . T . . END=1277588 GT:DP:GQ:MIN_DP:PL 0/0:38:21:35:0,21,988 +chrX 1277589 . A . . END=1277589 GT:DP:GQ:MIN_DP:PL 0/0:42:7:42:0,7,1162 +chrX 1277590 . T . . END=1277590 GT:DP:GQ:MIN_DP:PL 0/0:40:31:40:0,31,1061 +chrX 1277591 . C . . END=1277592 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,775 +chrX 1277593 . C CAA, 440.60 . AS_QUALapprox=|448|0;AS_VarDP=9|22|0;BaseQRankSum=0.054;DP=56;MQRankSum=0.255;QUALapprox=448;RAW_GT_COUNT=0,1,0;RAW_MQandDP=195481,56;ReadPosRankSum=-1.581;VarDP=31 GT:AD:DP:GQ:PL:SB 0/1:9,22,0:31:99:448,0,164,475,230,705:6,3,5,17 +chrX 1277594 . A . . END=1277692 GT:DP:GQ:MIN_DP:PL 0/0:62:28:51:0,28,1396 +chrX 1277693 . G A, 925.64 . AS_QUALapprox=|933|0;AS_VarDP=26|36|0;BaseQRankSum=-0.632;DP=65;MQRankSum=0.233;QUALapprox=933;RAW_GT_COUNT=0,1,0;RAW_MQandDP=229761,65;ReadPosRankSum=-1.077;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:26,36,0:62:99:933,0,632,1011,741,1751:15,11,19,17 +chrX 1277694 . A . . END=1277973 GT:DP:GQ:MIN_DP:PL 0/0:51:46:51:0,46,1023 +chrX 1277974 . C . . END=1277974 GT:DP:GQ:MIN_DP:PL 0/0:40:11:40:0,11,991 +chrX 1277975 . T . . END=1277975 GT:DP:GQ:MIN_DP:PL 0/0:43:25:43:0,25,1166 +chrX 1277976 . C CA, 180.60 . AS_QUALapprox=|188|0;AS_VarDP=12|12|0;BaseQRankSum=-0.644;DP=41;MQRankSum=0.000;QUALapprox=188;RAW_GT_COUNT=0,1,0;RAW_MQandDP=142201,41;ReadPosRankSum=0.000;VarDP=24 GT:AD:DP:GQ:PL:SB 0/1:12,12,0:24:99:188,0,202,224,238,462:7,5,4,8 +chrX 1277977 . A . . END=1278178 GT:DP:GQ:MIN_DP:PL 0/0:56:49:56:0,49,1305 +chrX 1278179 . C T, 576.64 . AS_QUALapprox=|584|0;AS_VarDP=25|22|0;BaseQRankSum=-0.500;DP=52;MQRankSum=0.418;QUALapprox=584;RAW_GT_COUNT=0,1,0;RAW_MQandDP=177302,52;ReadPosRankSum=0.491;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:25,22,0:47:99:584,0,683,659,749,1408:16,9,10,12 +chrX 1278180 . A . . END=1278697 GT:DP:GQ:MIN_DP:PL 0/0:61:40:61:0,40,1310 +chrX 1278698 . A T, 1641.06 . AS_QUALapprox=|1655|0;AS_VarDP=1|55|0;BaseQRankSum=1.987;DP=59;MQRankSum=-0.208;QUALapprox=1655;RAW_GT_COUNT=0,0,1;RAW_MQandDP=202544,59;ReadPosRankSum=-0.960;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:1,55,0:56:99:1655,157,0,1658,164,1665:1,0,23,32 +chrX 1278699 . T . . END=1278882 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,104,1666 +chrX 1278883 . C T, 538.64 . AS_QUALapprox=|546|0;AS_VarDP=34|21|0;BaseQRankSum=2.344;DP=58;MQRankSum=1.635;QUALapprox=546;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201526,58;ReadPosRankSum=-0.685;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:34,21,0:55:99:546,0,857,647,920,1567:18,16,10,11 +chrX 1278884 . A . . END=1278984 GT:DP:GQ:MIN_DP:PL 0/0:59:98:59:0,98,1606 +chrX 1278985 . C T, 487.64 . AS_QUALapprox=|495|0;AS_VarDP=32|20|0;BaseQRankSum=2.197;DP=56;MQRankSum=-1.225;QUALapprox=495;RAW_GT_COUNT=0,1,0;RAW_MQandDP=200601,56;ReadPosRankSum=-0.311;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:32,20,0:52:99:495,0,775,590,835,1425:13,19,10,10 +chrX 1278986 . G . . END=1279129 GT:DP:GQ:MIN_DP:PL 0/0:56:49:56:0,49,1414 +chrX 1279130 . T C, 944.64 . AS_QUALapprox=|952|0;AS_VarDP=33|34|0;BaseQRankSum=3.644;DP=68;MQRankSum=0.000;QUALapprox=952;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=1.493;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:33,34,0:67:99:952,0,750,1050,853,1902:18,15,18,16 +chrX 1279131 . A . . END=1279349 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 1279350 . AAAT A, 1292.60 . AS_QUALapprox=|1300|0;AS_VarDP=31|34|0;BaseQRankSum=1.317;DP=73;MQRankSum=0.000;QUALapprox=1300;RAW_GT_COUNT=0,1,0;RAW_MQandDP=262800,73;ReadPosRankSum=0.868;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:31,34,0:65:99:1300,0,1172,1394,1275,2668:14,17,15,19 +chrX 1279354 . A . . END=1279757 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,102,1254 +chrX 1279758 . C T, 926.64 . AS_QUALapprox=|934|0;AS_VarDP=26|35|0;BaseQRankSum=0.988;DP=64;MQRankSum=0.000;QUALapprox=934;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=0.686;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:26,35,0:61:99:934,0,591,1011,696,1707:9,17,15,20 +chrX 1279759 . G . . END=1279776 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1279777 . GTT G, 1241.60 . AS_QUALapprox=|1249|0;AS_VarDP=23|32|0;BaseQRankSum=0.399;DP=59;MQRankSum=0.000;QUALapprox=1249;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=0.344;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,32,0:55:99:0|1:1279777_GTT_G:1249,0,835,1318,931,2249:1279777:10,13,13,19 +chrX 1279780 . T . . END=1279800 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 1279801 . T C, 1265.64 . AS_QUALapprox=|1273|0;AS_VarDP=25|33|0;BaseQRankSum=-0.988;DP=59;MQRankSum=0.000;QUALapprox=1273;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=0.949;VarDP=58 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,33,0:58:99:0|1:1279777_GTT_G:1273,0,888,1349,988,2336:1279777:14,11,14,19 +chrX 1279802 . T . . END=1280487 GT:DP:GQ:MIN_DP:PL 0/0:56:79:56:0,79,1077 +chrX 1280488 . A G,AAAG, 733.64 . AS_QUALapprox=|741|184|0;AS_VarDP=15|19|2|0;BaseQRankSum=0.027;DP=52;MQRankSum=0.283;QUALapprox=741;RAW_GT_COUNT=0,1,0;RAW_MQandDP=178745,52;ReadPosRankSum=1.445;VarDP=36 GT:AD:DP:GQ:PL:SB 0/1:15,19,2,0:36:99:741,0,464,557,394,1236,726,512,1159,1309:6,9,11,10 +chrX 1280489 . A . . END=1280545 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 1280546 . G A, 640.64 . AS_QUALapprox=|648|0;AS_VarDP=27|25|0;BaseQRankSum=0.206;DP=53;MQRankSum=0.000;QUALapprox=648;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=0.220;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:27,25,0:52:99:648,0,706,729,781,1510:14,13,14,11 +chrX 1280547 . T . . END=1280644 GT:DP:GQ:MIN_DP:PL 0/0:53:73:53:0,73,1323 +chrX 1280645 . C . . END=1280645 GT:DP:GQ:MIN_DP:PL 0/0:48:5:48:0,5,1259 +chrX 1280646 . C . . END=1280652 GT:DP:GQ:MIN_DP:PL 0/0:43:25:42:0,25,1155 +chrX 1280653 . T . . END=1280654 GT:DP:GQ:MIN_DP:PL 0/0:42:6:42:0,6,1128 +chrX 1280655 . C . . END=1280655 GT:DP:GQ:MIN_DP:PL 0/0:42:91:42:0,91,1310 +chrX 1280656 . T . . END=1280656 GT:DP:GQ:MIN_DP:PL 0/0:41:19:41:0,19,1126 +chrX 1280657 . C . . END=1280793 GT:DP:GQ:MIN_DP:PL 0/0:42:22:40:0,22,1002 +chrX 1280794 . A G, 380.64 . AS_QUALapprox=|388|0;AS_VarDP=15|16|0;BaseQRankSum=-0.331;DP=31;MQRankSum=0.000;QUALapprox=388;RAW_GT_COUNT=0,1,0;RAW_MQandDP=111600,31;ReadPosRankSum=0.534;VarDP=31 GT:AD:DP:GQ:PL:SB 0/1:15,16,0:31:99:388,0,379,433,426,859:5,10,9,7 +chrX 1280795 . T . . END=1280852 GT:DP:GQ:MIN_DP:PL 0/0:42:20:41:0,20,1047 +chrX 1280853 . T TCTC, 447.60 . AS_QUALapprox=|455|0;AS_VarDP=12|13|0;BaseQRankSum=0.030;DP=33;MQRankSum=0.000;QUALapprox=455;RAW_GT_COUNT=0,1,0;RAW_MQandDP=117136,33;ReadPosRankSum=0.109;VarDP=25 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:12,13,0:25:99:0|1:1280853_T_TCTC:455,0,445,492,484,976:1280853:6,6,8,5 +chrX 1280854 . C . . END=1280885 GT:DP:GQ:MIN_DP:PL 0/0:31:37:29:0,37,758 +chrX 1280886 . T . . END=1280886 GT:DP:GQ:MIN_DP:PL 0/0:56:0:56:0,0,1278 +chrX 1280887 . C . . END=1280903 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1280904 . G . . END=1280904 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,650 +chrX 1280905 . C . . END=1280909 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1280910 . T . . END=1280910 GT:DP:GQ:MIN_DP:PL 0/0:53:0:53:0,0,800 +chrX 1280911 . C . . END=1280927 GT:DP:GQ:MIN_DP:PL 0/0:46:56:35:0,56,745 +chrX 1280928 . T C,TCCTTCTCCTCCTCCTCCTCCTC, 0.02 . AS_QUALapprox=|0|2|0;AS_VarDP=0|0|0|0;BaseQRankSum=0.764;DP=34;MQRankSum=-1.715;QUALapprox=2;RAW_GT_COUNT=0,1,0;RAW_MQandDP=106406,34;ReadPosRankSum=0.868;VarDP=22 GT:AD:DP:GQ:PL:SB 0/2:21,0,1,0:22:2:2,12,821,0,684,674,45,775,697,789:10,11,1,0 +chrX 1280929 . C . . END=1280945 GT:DP:GQ:MIN_DP:PL 0/0:19:39:18:0,39,585 +chrX 1280946 . G . . END=1280946 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,242 +chrX 1280947 . C . . END=1280964 GT:DP:GQ:MIN_DP:PL 0/0:18:22:16:0,22,361 +chrX 1280965 . C . . END=1280976 GT:DP:GQ:MIN_DP:PL 0/0:18:0:18:0,0,102 +chrX 1280977 . C . . END=1280993 GT:DP:GQ:MIN_DP:PL 0/0:18:36:17:0,36,430 +chrX 1280994 . T . . END=1280994 GT:DP:GQ:MIN_DP:PL 0/0:20:6:20:0,6,416 +chrX 1280995 . C . . END=1281005 GT:DP:GQ:MIN_DP:PL 0/0:20:39:19:0,39,585 +chrX 1281006 . C T, 54.64 . AS_QUALapprox=|62|0;AS_VarDP=12|4|0;BaseQRankSum=-0.072;DP=19;MQRankSum=1.550;QUALapprox=62;RAW_GT_COUNT=0,1,0;RAW_MQandDP=58579,19;ReadPosRankSum=-0.196;VarDP=16 GT:AD:DP:GQ:PL:SB 0/1:12,4,0:16:62:62,0,193,92,205,297:7,5,2,2 +chrX 1281007 . C . . END=1281008 GT:DP:GQ:MIN_DP:PL 0/0:30:62:30:0,62,808 +chrX 1281009 . T . . END=1281009 GT:DP:GQ:MIN_DP:PL 0/0:24:0:24:0,0,285 +chrX 1281010 . C . . END=1281023 GT:DP:GQ:MIN_DP:PL 0/0:28:51:28:0,51,765 +chrX 1281024 . T C, 10.64 . AS_QUALapprox=|18|0;AS_VarDP=9|2|0;BaseQRankSum=-0.524;DP=12;MQRankSum=1.335;QUALapprox=18;RAW_GT_COUNT=0,1,0;RAW_MQandDP=33755,12;ReadPosRankSum=0.126;VarDP=11 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:9,2,0:11:18:0|1:1281024_T_C:18,0,347,45,351,396:1281024:3,6,1,1 +chrX 1281025 . C . . END=1281027 GT:DP:GQ:MIN_DP:PL 0/0:10:27:10:0,27,405 +chrX 1281028 . C . . END=1281028 GT:DP:GQ:MIN_DP:PL 0/0:10:0:10:0,0,258 +chrX 1281029 . T . . END=1281036 GT:DP:GQ:MIN_DP:PL 0/0:11:27:10:0,27,405 +chrX 1281037 . A C, 14.63 . AS_QUALapprox=|22|0;AS_VarDP=9|2|0;BaseQRankSum=-0.140;DP=11;MQRankSum=1.335;QUALapprox=22;RAW_GT_COUNT=0,1,0;RAW_MQandDP=30155,11;ReadPosRankSum=-1.834;VarDP=11 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:9,2,0:11:22:0|1:1281024_T_C:22,0,346,49,351,400:1281024:3,6,0,2 +chrX 1281038 . T . . END=1281047 GT:DP:GQ:MIN_DP:PL 0/0:11:24:10:0,24,217 +chrX 1281048 . G . . END=1281048 GT:DP:GQ:MIN_DP:PL 0/0:9:0:9:0,0,184 +chrX 1281049 . C . . END=1281055 GT:DP:GQ:MIN_DP:PL 0/0:11:24:11:0,24,360 +chrX 1281056 . T . . END=1281056 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,262 +chrX 1281057 . C . . END=1281066 GT:DP:GQ:MIN_DP:PL 0/0:10:27:10:0,27,272 +chrX 1281067 . T . . END=1281067 GT:DP:GQ:MIN_DP:PL 0/0:9:13:9:0,13,244 +chrX 1281068 . T . . END=1281091 GT:DP:GQ:MIN_DP:PL 0/0:12:24:11:0,24,272 +chrX 1281092 . G . . END=1281092 GT:DP:GQ:MIN_DP:PL 0/0:9:12:9:0,12,243 +chrX 1281093 . C . . END=1281099 GT:DP:GQ:MIN_DP:PL 0/0:12:22:12:0,22,328 +chrX 1281100 . T . . END=1281100 GT:DP:GQ:MIN_DP:PL 0/0:9:12:9:0,12,223 +chrX 1281101 . C . . END=1281111 GT:DP:GQ:MIN_DP:PL 0/0:15:39:13:0,39,421 +chrX 1281112 . TCTC T,CCTC, 292.60 . AS_QUALapprox=|300|61|0;AS_VarDP=5|8|4|0;BaseQRankSum=-1.121;DP=25;MQRankSum=-1.570;QUALapprox=300;RAW_GT_COUNT=0,1,0;RAW_MQandDP=80265,25;ReadPosRankSum=0.341;VarDP=17 GT:AD:DP:GQ:PL:SB 0/1:5,8,4,0:17:99:300,0,228,239,121,385,297,205,395,491:2,3,5,7 +chrX 1281116 . C . . END=1281164 GT:DP:GQ:MIN_DP:PL 0/0:20:36:12:0,36,387 +chrX 1281165 . A . . END=1281165 GT:DP:GQ:MIN_DP:PL 0/0:31:5:31:0,5,548 +chrX 1281166 . C . . END=1281203 GT:DP:GQ:MIN_DP:PL 0/0:34:39:33:0,39,897 +chrX 1281204 . A . . END=1281204 GT:DP:GQ:MIN_DP:PL 0/0:37:15:37:0,15,516 +chrX 1281205 . C . . END=1281218 GT:DP:GQ:MIN_DP:PL 0/0:35:32:34:0,32,891 +chrX 1281219 . A . . END=1281219 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,545 +chrX 1281220 . C . . END=1281233 GT:DP:GQ:MIN_DP:PL 0/0:35:20:34:0,20,815 +chrX 1281234 . A . . END=1281234 GT:DP:GQ:MIN_DP:PL 0/0:29:0:29:0,0,290 +chrX 1281235 . C . . END=1281269 GT:DP:GQ:MIN_DP:PL 0/0:36:40:36:0,40,921 +chrX 1281270 . G . . END=1281270 GT:DP:GQ:MIN_DP:PL 0/0:30:16:30:0,16,784 +chrX 1281271 . C . . END=1281293 GT:DP:GQ:MIN_DP:PL 0/0:39:71:39:0,71,1060 +chrX 1281294 . A . . END=1281294 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,497 +chrX 1281295 . C . . END=1281341 GT:DP:GQ:MIN_DP:PL 0/0:37:49:37:0,49,867 +chrX 1281342 . T . . END=1281342 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,594 +chrX 1281343 . C . . END=1281356 GT:DP:GQ:MIN_DP:PL 0/0:29:38:28:0,38,757 +chrX 1281357 . T . . END=1281357 GT:DP:GQ:MIN_DP:PL 0/0:27:0:27:0,0,442 +chrX 1281358 . C . . END=1281371 GT:DP:GQ:MIN_DP:PL 0/0:34:41:34:0,41,848 +chrX 1281372 . T . . END=1281372 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,533 +chrX 1281373 . C . . END=1281384 GT:DP:GQ:MIN_DP:PL 0/0:31:58:31:0,58,799 +chrX 1281385 . C . . END=1281387 GT:DP:GQ:MIN_DP:PL 0/0:29:0:29:0,0,510 +chrX 1281388 . C . . END=1281400 GT:DP:GQ:MIN_DP:PL 0/0:32:22:31:0,22,874 +chrX 1281401 . G . . END=1281401 GT:DP:GQ:MIN_DP:PL 0/0:23:0:23:0,0,293 +chrX 1281402 . C . . END=1281404 GT:DP:GQ:MIN_DP:PL 0/0:31:72:31:0,72,1080 +chrX 1281405 . T . . END=1281405 GT:DP:GQ:MIN_DP:PL 0/0:28:10:28:0,10,694 +chrX 1281406 . C . . END=1281410 GT:DP:GQ:MIN_DP:PL 0/0:29:52:29:0,52,919 +chrX 1281411 . A . . END=1281411 GT:DP:GQ:MIN_DP:PL 0/0:25:0:25:0,0,315 +chrX 1281412 . C . . END=1281419 GT:DP:GQ:MIN_DP:PL 0/0:26:22:25:0,22,769 +chrX 1281420 . T . . END=1281420 GT:DP:GQ:MIN_DP:PL 0/0:25:0:25:0,0,579 +chrX 1281421 . C . . END=1281446 GT:DP:GQ:MIN_DP:PL 0/0:29:31:27:0,31,709 +chrX 1281447 . G . . END=1281447 GT:DP:GQ:MIN_DP:PL 0/0:27:0:27:0,0,481 +chrX 1281448 . C . . END=1281452 GT:DP:GQ:MIN_DP:PL 0/0:34:67:34:0,67,1012 +chrX 1281453 . T . . END=1281453 GT:DP:GQ:MIN_DP:PL 0/0:31:15:31:0,15,810 +chrX 1281454 . C . . END=1281476 GT:DP:GQ:MIN_DP:PL 0/0:39:70:39:0,70,959 +chrX 1281477 . G . . END=1281477 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,713 +chrX 1281478 . C . . END=1281500 GT:DP:GQ:MIN_DP:PL 0/0:46:46:46:0,46,1041 +chrX 1281501 . A C, 50.64 . AS_QUALapprox=|58|0;AS_VarDP=29|11|0;BaseQRankSum=-2.425;DP=46;MQRankSum=-0.722;QUALapprox=58;RAW_GT_COUNT=0,1,0;RAW_MQandDP=161070,46;ReadPosRankSum=1.576;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:29,11,0:40:58:58,0,598,141,628,769:17,12,4,7 +chrX 1281502 . C . . END=1281539 GT:DP:GQ:MIN_DP:PL 0/0:43:88:43:0,88,1173 +chrX 1281540 . C T, 556.64 . AS_QUALapprox=|564|0;AS_VarDP=21|21|0;BaseQRankSum=0.798;DP=45;MQRankSum=1.048;QUALapprox=564;RAW_GT_COUNT=0,1,0;RAW_MQandDP=159769,45;ReadPosRankSum=-0.076;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:21,21,0:42:99:564,0,529,626,592,1218:6,15,13,8 +chrX 1281541 . C . . END=1282030 GT:DP:GQ:MIN_DP:PL 0/0:44:22:34:0,22,957 +chrX 1282031 . T TA, 165.60 . AS_QUALapprox=|173|0;AS_VarDP=14|13|0;BaseQRankSum=0.374;DP=45;MQRankSum=0.000;QUALapprox=173;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=-1.311;VarDP=27 GT:AD:DP:GQ:PL:SB 0/1:14,13,0:27:99:173,0,194,214,233,447:9,5,8,5 +chrX 1282032 . A . . END=1282055 GT:DP:GQ:MIN_DP:PL 0/0:54:87:54:0,87,1305 +chrX 1282056 . T . . END=1282056 GT:DP:GQ:MIN_DP:PL 0/0:57:0:57:0,0,1443 +chrX 1282057 . T . . END=1283122 GT:DP:GQ:MIN_DP:PL 0/0:55:89:55:0,89,1296 +chrX 1283123 . GTTCC G, 408.60 . AS_QUALapprox=|416|0;AS_VarDP=22|12|0;BaseQRankSum=1.256;DP=49;MQRankSum=1.104;QUALapprox=416;RAW_GT_COUNT=0,1,0;RAW_MQandDP=173825,49;ReadPosRankSum=1.306;VarDP=34 GT:AD:DP:GQ:PL:SB 0/1:22,12,0:34:99:416,0,833,482,870,1352:10,12,7,5 +chrX 1283128 . T . . END=1283166 GT:DP:GQ:MIN_DP:PL 0/0:43:83:43:0,83,999 +chrX 1283167 . GTTCC G, 1361.03 . AS_QUALapprox=|1375|0;AS_VarDP=0|32|0;DP=42;QUALapprox=1375;RAW_GT_COUNT=0,0,1;RAW_MQandDP=148625,42;VarDP=32 GT:AD:DP:GQ:PL:SB 1/1:0,32,0:32:96:1375,96,0,1375,96,1375:0,0,13,19 +chrX 1283172 . T . . END=1283434 GT:DP:GQ:MIN_DP:PL 0/0:38:45:38:0,45,796 +chrX 1283435 . A . . END=1283435 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,633 +chrX 1283436 . T . . END=1284118 GT:DP:GQ:MIN_DP:PL 0/0:57:64:57:0,64,909 +chrX 1284119 . T C, 666.64 . AS_QUALapprox=|674|0;AS_VarDP=27|26|0;BaseQRankSum=-1.444;DP=53;MQRankSum=0.000;QUALapprox=674;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=-0.009;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:27,26,0:53:99:674,0,749,756,827,1583:12,15,14,12 +chrX 1284120 . G . . END=1284188 GT:DP:GQ:MIN_DP:PL 0/0:44:63:44:0,63,945 +chrX 1284189 . G C, 662.64 . AS_QUALapprox=|670|0;AS_VarDP=17|18|0;BaseQRankSum=-0.631;DP=37;MQRankSum=0.612;QUALapprox=670;RAW_GT_COUNT=0,1,0;RAW_MQandDP=128450,37;ReadPosRankSum=1.206;VarDP=35 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:17,18,0:35:99:0|1:1284189_G_C:670,0,638,721,693,1414:1284189:8,9,9,9 +chrX 1284190 . T . . END=1284194 GT:DP:GQ:MIN_DP:PL 0/0:32:45:32:0,45,675 +chrX 1284195 . CTTTT C, 621.60 . AS_QUALapprox=|629|0;AS_VarDP=20|17|0;BaseQRankSum=-1.333;DP=37;MQRankSum=1.180;QUALapprox=629;RAW_GT_COUNT=0,1,0;RAW_MQandDP=124531,37;ReadPosRankSum=0.775;VarDP=37 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:20,17,0:37:99:0|1:1284189_G_C:629,0,782,689,833,1523:1284189:8,12,9,8 +chrX 1284200 . T . . END=1284200 GT:DP:GQ:MIN_DP:PL 0/0:36:45:36:0,45,675 +chrX 1284201 . T C, 621.64 . AS_QUALapprox=|629|0;AS_VarDP=20|17|0;BaseQRankSum=-0.633;DP=38;MQRankSum=1.180;QUALapprox=629;RAW_GT_COUNT=0,1,0;RAW_MQandDP=128131,38;ReadPosRankSum=-0.381;VarDP=37 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:20,17,0:37:99:0|1:1284189_G_C:629,0,782,689,833,1523:1284189:8,12,9,8 +chrX 1284202 . T . . END=1284221 GT:DP:GQ:MIN_DP:PL 0/0:36:51:36:0,51,765 +chrX 1284222 . G . . END=1284222 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,655 +chrX 1284223 . A . . END=1284265 GT:DP:GQ:MIN_DP:PL 0/0:32:55:32:0,55,842 +chrX 1284266 . T . . END=1284266 GT:DP:GQ:MIN_DP:PL 0/0:34:18:34:0,18,981 +chrX 1284267 . G . . END=1284272 GT:DP:GQ:MIN_DP:PL 0/0:34:88:34:0,88,982 +chrX 1284273 . G A, 124.64 . AS_QUALapprox=|132|0;AS_VarDP=27|7|0;BaseQRankSum=1.019;DP=34;MQRankSum=0.353;QUALapprox=132;RAW_GT_COUNT=0,1,0;RAW_MQandDP=112127,34;ReadPosRankSum=-0.213;VarDP=34 GT:AD:DP:GQ:PL:SB 0/1:27,7,0:34:99:132,0,778,212,799,1011:12,15,1,6 +chrX 1284274 . G . . END=1284350 GT:DP:GQ:MIN_DP:PL 0/0:36:70:36:0,70,1002 +chrX 1284351 . C . . END=1284351 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,184 +chrX 1284352 . A . . END=1284373 GT:DP:GQ:MIN_DP:PL 0/0:34:50:34:0,50,938 +chrX 1284374 . A . . END=1284374 GT:DP:GQ:MIN_DP:PL 0/0:37:17:37:0,17,957 +chrX 1284375 . A . . END=1284376 GT:DP:GQ:MIN_DP:PL 0/0:40:92:40:0,92,1186 +chrX 1284377 . T . . END=1284377 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,888 +chrX 1284378 . T . . END=1284430 GT:DP:GQ:MIN_DP:PL 0/0:48:54:48:0,54,1215 +chrX 1284431 . A . . END=1284431 GT:DP:GQ:MIN_DP:PL 0/0:53:0:53:0,0,1272 +chrX 1284432 . T . . END=1284446 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,108,1641 +chrX 1284447 . G . . END=1284447 GT:DP:GQ:MIN_DP:PL 0/0:57:0:57:0,0,1251 +chrX 1284448 . A . . END=1284467 GT:DP:GQ:MIN_DP:PL 0/0:64:26:60:0,26,1385 +chrX 1284468 . A . . END=1284468 GT:DP:GQ:MIN_DP:PL 0/0:53:0:53:0,0,381 +chrX 1284469 . C . . END=1284532 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,110,1482 +chrX 1284533 . T . . END=1284533 GT:DP:GQ:MIN_DP:PL 0/0:53:0:53:0,0,1074 +chrX 1284534 . C . . END=1284610 GT:DP:GQ:MIN_DP:PL 0/0:58:91:58:0,91,1555 +chrX 1284611 . TTTA T, 312.60 . AS_QUALapprox=|320|0;AS_VarDP=32|11|0;BaseQRankSum=1.211;DP=45;MQRankSum=-3.231;QUALapprox=320;RAW_GT_COUNT=0,1,0;RAW_MQandDP=111673,45;ReadPosRankSum=-0.223;VarDP=43 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:32,11,0:43:99:0|1:1284611_TTTA_T:320,0,1268,416,1301,1717:1284611:18,14,3,8 +chrX 1284615 . A . . END=1284625 GT:DP:GQ:MIN_DP:PL 0/0:38:56:38:0,56,1071 +chrX 1284626 . C G, 272.64 . AS_QUALapprox=|280|0;AS_VarDP=29|9|0;BaseQRankSum=0.619;DP=40;MQRankSum=-3.729;QUALapprox=280;RAW_GT_COUNT=0,1,0;RAW_MQandDP=111589,40;ReadPosRankSum=0.584;VarDP=38 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,9,0:38:99:0|1:1284611_TTTA_T:280,0,1180,368,1207,1575:1284611:17,12,4,5 +chrX 1284627 . G . . END=1284659 GT:DP:GQ:MIN_DP:PL 0/0:36:77:36:0,77,1042 +chrX 1284660 . A ATT, 164.60 . AS_QUALapprox=|172|0;AS_VarDP=9|10|0;BaseQRankSum=0.641;DP=40;MQRankSum=-0.264;QUALapprox=172;RAW_GT_COUNT=0,1,0;RAW_MQandDP=114398,40;ReadPosRankSum=1.103;VarDP=19 GT:AD:DP:GQ:PL:SB 0/1:9,10,0:19:99:172,0,192,199,221,421:3,6,9,1 +chrX 1284661 . T . . END=1284682 GT:DP:GQ:MIN_DP:PL 0/0:68:62:68:0,62,1215 +chrX 1284683 . G . . END=1284686 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,430 +chrX 1284687 . T . . END=1284687 GT:DP:GQ:MIN_DP:PL 0/0:34:88:34:0,88,1032 +chrX 1284688 . G . . END=1284690 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,755 +chrX 1284691 . G . . END=1284694 GT:DP:GQ:MIN_DP:PL 0/0:41:95:41:0,95,1240 +chrX 1284695 . T . . END=1284698 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,829 +chrX 1284699 . C . . END=1284699 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,120,1800 +chrX 1284700 . T . . END=1284700 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,987 +chrX 1284701 . G . . END=1284703 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1284704 . T . . END=1284704 GT:DP:GQ:MIN_DP:PL 0/0:65:0:65:0,0,1116 +chrX 1284705 . C . . END=1284726 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 1284727 . C . . END=1284727 GT:DP:GQ:MIN_DP:PL 0/0:69:0:69:0,0,173 +chrX 1284728 . G . . END=1284737 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 1284738 . C . . END=1284738 GT:DP:GQ:MIN_DP:PL 0/0:70:0:70:0,0,813 +chrX 1284739 . A . . END=1284756 GT:DP:GQ:MIN_DP:PL 0/0:78:99:78:0,120,1800 +chrX 1284757 . C . . END=1284757 GT:DP:GQ:MIN_DP:PL 0/0:85:0:85:0,0,0 +chrX 1284758 . G . . END=1284909 GT:DP:GQ:MIN_DP:PL 0/0:93:99:93:0,120,1800 +chrX 1284910 . G A, 210.64 . AS_QUALapprox=|218|0;AS_VarDP=67|10|0;BaseQRankSum=0.953;DP=80;MQRankSum=-4.520;QUALapprox=218;RAW_GT_COUNT=0,1,0;RAW_MQandDP=278383,80;ReadPosRankSum=-3.028;VarDP=77 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:67,10,0:77:99:0|1:1284910_G_A:218,0,2783,420,2813,3233:1284910:30,37,4,6 +chrX 1284911 . C . . END=1284913 GT:DP:GQ:MIN_DP:PL 0/0:75:99:75:0,120,1800 +chrX 1284914 . A G, 210.64 . AS_QUALapprox=|218|0;AS_VarDP=67|10|0;BaseQRankSum=0.817;DP=78;MQRankSum=-4.520;QUALapprox=218;RAW_GT_COUNT=0,1,0;RAW_MQandDP=272758,78;ReadPosRankSum=-3.365;VarDP=77 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:67,10,0:77:99:0|1:1284910_G_A:218,0,2783,420,2813,3233:1284910:30,37,4,6 +chrX 1284915 . C . . END=1284918 GT:DP:GQ:MIN_DP:PL 0/0:76:99:76:0,120,1800 +chrX 1284919 . A G, 159.64 . AS_QUALapprox=|167|0;AS_VarDP=70|9|0;BaseQRankSum=0.297;DP=80;MQRankSum=-4.869;QUALapprox=167;RAW_GT_COUNT=0,1,0;RAW_MQandDP=279958,80;ReadPosRankSum=-3.322;VarDP=79 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:70,9,0:79:99:0|1:1284910_G_A:167,0,2882,378,2909,3287:1284910:32,38,3,6 +chrX 1284920 . G . . END=1284923 GT:DP:GQ:MIN_DP:PL 0/0:75:99:75:0,120,1800 +chrX 1284924 . A C, 81.64 . AS_QUALapprox=|89|0;AS_VarDP=68|7|0;BaseQRankSum=1.073;DP=77;MQRankSum=-5.445;QUALapprox=89;RAW_GT_COUNT=0,1,0;RAW_MQandDP=269158,77;ReadPosRankSum=-2.982;VarDP=75 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:68,7,0:75:89:0|1:1284910_G_A:89,0,2804,294,2825,3119:1284910:30,38,3,4 +chrX 1284925 . C . . END=1284961 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1284962 . T C, 823.64 . AS_QUALapprox=|831|0;AS_VarDP=39|33|0;BaseQRankSum=0.303;DP=74;MQRankSum=0.000;QUALapprox=831;RAW_GT_COUNT=0,1,0;RAW_MQandDP=263200,74;ReadPosRankSum=-2.340;VarDP=72 GT:AD:DP:GQ:PL:SB 0/1:39,33,0:72:99:831,0,1029,949,1128,2077:20,19,15,18 +chrX 1284963 . G . . END=1285063 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1285064 . A T, 1004.64 . AS_QUALapprox=|1012|0;AS_VarDP=34|27|0;BaseQRankSum=1.336;DP=61;MQRankSum=0.000;QUALapprox=1012;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-1.077;VarDP=61 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:34,27,0:61:99:0|1:1285064_A_T:1012,0,1323,1114,1404,2519:1285064:17,17,18,9 +chrX 1285065 . A T, 1004.64 . AS_QUALapprox=|1012|0;AS_VarDP=34|27|0;BaseQRankSum=0.854;DP=62;MQRankSum=0.000;QUALapprox=1012;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=-1.039;VarDP=61 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:34,27,0:61:99:0|1:1285064_A_T:1012,0,1323,1114,1404,2519:1285064:17,17,18,9 +chrX 1285066 . A . . END=1285119 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 1285120 . G C, 741.64 . AS_QUALapprox=|749|0;AS_VarDP=40|28|0;BaseQRankSum=2.110;DP=68;MQRankSum=0.000;QUALapprox=749;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=0.548;VarDP=68 GT:AD:DP:GQ:PL:SB 0/1:40,28,0:68:99:749,0,1061,869,1145,2014:19,21,17,11 +chrX 1285121 . A . . END=1285167 GT:DP:GQ:MIN_DP:PL 0/0:73:99:73:0,120,1800 +chrX 1285168 . T A, 958.64 . AS_QUALapprox=|966|0;AS_VarDP=41|39|0;BaseQRankSum=-0.284;DP=80;MQRankSum=0.000;QUALapprox=966;RAW_GT_COUNT=0,1,0;RAW_MQandDP=288000,80;ReadPosRankSum=-0.323;VarDP=80 GT:AD:DP:GQ:PL:SB 0/1:41,39,0:80:99:966,0,1065,1089,1182,2270:21,20,20,19 +chrX 1285169 . G . . END=1285386 GT:DP:GQ:MIN_DP:PL 0/0:73:99:73:0,120,1800 +chrX 1285387 . G A, 938.64 . AS_QUALapprox=|946|0;AS_VarDP=32|36|0;BaseQRankSum=1.117;DP=69;MQRankSum=0.000;QUALapprox=946;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=0.129;VarDP=68 GT:AD:DP:GQ:PL:SB 0/1:32,36,0:68:99:946,0,777,1042,886,1928:15,17,14,22 +chrX 1285388 . G . . END=1285431 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1285432 . G A, 729.64 . AS_QUALapprox=|737|0;AS_VarDP=28|29|0;BaseQRankSum=-1.402;DP=60;MQRankSum=0.000;QUALapprox=737;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=0.950;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:28,29,0:57:99:737,0,752,821,839,1660:12,16,14,15 +chrX 1285433 . C . . END=1285483 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1285484 . G A, 486.64 . AS_QUALapprox=|494|0;AS_VarDP=26|18|0;BaseQRankSum=2.385;DP=44;MQRankSum=0.355;QUALapprox=494;RAW_GT_COUNT=0,1,0;RAW_MQandDP=153268,44;ReadPosRankSum=-0.239;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:26,18,0:44:99:494,0,672,572,726,1298:14,12,6,12 +chrX 1285485 . G . . END=1285627 GT:DP:GQ:MIN_DP:PL 0/0:47:63:47:0,63,1240 +chrX 1285628 . GAGCTTGC G, 811.60 . AS_QUALapprox=|819|0;AS_VarDP=21|21|0;BaseQRankSum=0.457;DP=44;MQRankSum=0.000;QUALapprox=819;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=-0.705;VarDP=42 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,21,0:42:99:0|1:1285628_GAGCTTGC_G:819,0,818,882,882,1764:1285628:14,7,11,10 +chrX 1285636 . A . . END=1285647 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,102,1320 +chrX 1285648 . C G, 853.64 . AS_QUALapprox=|861|0;AS_VarDP=21|22|0;BaseQRankSum=0.348;DP=43;MQRankSum=0.000;QUALapprox=861;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154800,43;ReadPosRankSum=0.203;VarDP=43 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,22,0:43:99:0|1:1285628_GAGCTTGC_G:861,0,816,924,882,1806:1285628:14,7,12,10 +chrX 1285649 . C . . END=1285659 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,103,1267 +chrX 1285660 . G C, 688.64 . AS_QUALapprox=|696|0;AS_VarDP=20|18|0;BaseQRankSum=0.424;DP=39;MQRankSum=0.000;QUALapprox=696;RAW_GT_COUNT=0,1,0;RAW_MQandDP=139716,39;ReadPosRankSum=0.570;VarDP=38 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:20,18,0:38:99:0|1:1285628_GAGCTTGC_G:696,0,786,756,840,1596:1285628:14,6,10,8 +chrX 1285661 . C . . END=1285700 GT:DP:GQ:MIN_DP:PL 0/0:37:41:37:0,41,855 +chrX 1285701 . C CA, 161.60 . AS_QUALapprox=|169|0;AS_VarDP=16|18|0;BaseQRankSum=1.027;DP=54;MQRankSum=-1.480;QUALapprox=169;RAW_GT_COUNT=0,1,0;RAW_MQandDP=179193,54;ReadPosRankSum=-1.208;VarDP=34 GT:AD:DP:GQ:PL:SB 0/1:16,18,0:34:99:169,0,462,218,512,730:8,8,7,11 +chrX 1285702 . A . . END=1285718 GT:DP:GQ:MIN_DP:PL 0/0:46:93:46:0,93,1395 +chrX 1285719 . AAAAAAAAAAAAAG A, 516.60 . AS_QUALapprox=|524|0;AS_VarDP=30|19|0;BaseQRankSum=0.440;DP=53;MQRankSum=1.117;QUALapprox=524;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176277,53;ReadPosRankSum=-0.904;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:30,19,0:49:99:524,0,1107,615,1164,1779:14,16,10,9 +chrX 1285733 . G . . END=1285737 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,109,1697 +chrX 1285738 . G . . END=1285738 GT:DP:GQ:MIN_DP:PL 0/0:52:0:52:0,0,1299 +chrX 1285739 . A . . END=1285938 GT:DP:GQ:MIN_DP:PL 0/0:57:72:57:0,72,1548 +chrX 1285939 . T G, 588.64 . AS_QUALapprox=|596|0;AS_VarDP=34|22|0;BaseQRankSum=2.080;DP=59;MQRankSum=0.000;QUALapprox=596;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=0.378;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:34,22,0:56:99:596,0,939,697,1005,1702:12,22,10,12 +chrX 1285940 . C . . END=1286016 GT:DP:GQ:MIN_DP:PL 0/0:74:99:74:0,120,1800 +chrX 1286017 . C A, 3249.06 . AS_QUALapprox=|3263|0;AS_VarDP=0|75|0;DP=81;QUALapprox=3263;RAW_GT_COUNT=0,0,1;RAW_MQandDP=277139,81;VarDP=75 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,75,0:75:99:0|1:1286017_C_A:3263,226,0,3263,226,3263:1286017:0,0,39,36 +chrX 1286018 . A . . END=1286037 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,120,1800 +chrX 1286038 . T C, 3305.06 . AS_QUALapprox=|3319|0;AS_VarDP=0|74|0;DP=78;QUALapprox=3319;RAW_GT_COUNT=0,0,1;RAW_MQandDP=264035,78;VarDP=74 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,74,0:74:99:0|1:1286017_C_A:3319,223,0,3319,223,3319:1286017:0,0,34,40 +chrX 1286039 . G . . END=1286042 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 1286043 . T C, 3270.06 . AS_QUALapprox=|3284|0;AS_VarDP=0|73|0;DP=76;QUALapprox=3284;RAW_GT_COUNT=0,0,1;RAW_MQandDP=258410,76;VarDP=73 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,73,0:73:99:0|1:1286017_C_A:3284,220,0,3284,220,3284:1286017:0,0,33,40 +chrX 1286044 . G . . END=1286047 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1286048 . G A, 646.64 . AS_QUALapprox=|654|0;AS_VarDP=44|26|0;BaseQRankSum=1.176;DP=76;MQRankSum=-0.180;QUALapprox=654;RAW_GT_COUNT=0,1,0;RAW_MQandDP=258410,76;ReadPosRankSum=-1.082;VarDP=70 GT:AD:DP:GQ:PL:SB 0/1:44,26,0:70:99:654,0,1193,785,1271,2057:25,19,8,18 +chrX 1286049 . G . . END=1286070 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 1286071 . A G, 2466.06 . AS_QUALapprox=|2480|0;AS_VarDP=1|71|0;BaseQRankSum=1.436;DP=76;MQRankSum=-0.384;QUALapprox=2480;RAW_GT_COUNT=0,0,1;RAW_MQandDP=256410,76;ReadPosRankSum=0.217;VarDP=72 GT:AD:DP:GQ:PL:SB 1/1:1,71,0:72:99:2480,190,0,2483,212,2505:1,0,34,37 +chrX 1286072 . A . . END=1286266 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1286267 . T C, 720.64 . AS_QUALapprox=|728|0;AS_VarDP=17|33|0;BaseQRankSum=-1.942;DP=51;MQRankSum=-0.676;QUALapprox=728;RAW_GT_COUNT=0,1,0;RAW_MQandDP=181089,51;ReadPosRankSum=1.291;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:17,33,0:50:99:728,0,393,779,489,1268:9,8,14,19 +chrX 1286268 . G . . END=1286279 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,120,1800 +chrX 1286280 . G A, 892.64 . AS_QUALapprox=|900|0;AS_VarDP=15|32|0;BaseQRankSum=1.251;DP=49;MQRankSum=-0.639;QUALapprox=900;RAW_GT_COUNT=0,1,0;RAW_MQandDP=173889,49;ReadPosRankSum=-0.320;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:15,32,0:47:99:900,0,310,945,406,1351:8,7,13,19 +chrX 1286281 . C . . END=1286349 GT:DP:GQ:MIN_DP:PL 0/0:50:48:50:0,48,1235 +chrX 1286350 . C G, 731.64 . AS_QUALapprox=|739|0;AS_VarDP=22|26|0;BaseQRankSum=0.194;DP=53;MQRankSum=0.179;QUALapprox=739;RAW_GT_COUNT=0,1,0;RAW_MQandDP=186170,53;ReadPosRankSum=-0.072;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:22,26,0:48:99:739,0,600,806,679,1484:13,9,10,16 +chrX 1286351 . C . . END=1286387 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 1286388 . G T, 939.64 . AS_QUALapprox=|947|0;AS_VarDP=27|26|0;BaseQRankSum=-0.433;DP=55;MQRankSum=-0.027;QUALapprox=947;RAW_GT_COUNT=0,1,0;RAW_MQandDP=193489,55;ReadPosRankSum=-1.127;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,26,0:53:99:0|1:1286388_G_T:947,0,1024,1028,1102,2131:1286388:16,11,13,13 +chrX 1286389 . T . . END=1286394 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 1286395 . C G, 936.64 . AS_QUALapprox=|944|0;AS_VarDP=28|26|0;BaseQRankSum=-2.060;DP=54;MQRankSum=-0.053;QUALapprox=944;RAW_GT_COUNT=0,1,0;RAW_MQandDP=189889,54;ReadPosRankSum=-1.221;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,26,0:54:99:0|1:1286388_G_T:944,0,1055,1029,1133,2161:1286388:18,10,14,12 +chrX 1286396 . C . . END=1286421 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 1286422 . A G, 895.64 . AS_QUALapprox=|903|0;AS_VarDP=23|35|0;BaseQRankSum=-1.914;DP=59;MQRankSum=-1.131;QUALapprox=903;RAW_GT_COUNT=0,1,0;RAW_MQandDP=210049,59;ReadPosRankSum=-0.151;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:23,35,0:58:99:903,0,591,971,696,1667:13,10,19,16 +chrX 1286423 . G . . END=1286473 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 1286474 . CAGG C, 1033.60 . AS_QUALapprox=|1041|0;AS_VarDP=38|28|0;BaseQRankSum=0.476;DP=70;MQRankSum=0.306;QUALapprox=1041;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248965,70;ReadPosRankSum=2.261;VarDP=66 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:38,28,0:66:99:0|1:1286474_CAGG_C:1041,0,1501,1156,1585,2741:1286474:22,16,15,13 +chrX 1286478 . A . . END=1286486 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 1286487 . G C, 1036.64 . AS_QUALapprox=|1044|0;AS_VarDP=37|28|0;BaseQRankSum=0.222;DP=67;MQRankSum=-0.199;QUALapprox=1044;RAW_GT_COUNT=0,1,0;RAW_MQandDP=238516,67;ReadPosRankSum=1.969;VarDP=65 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:37,28,0:65:99:0|1:1286474_CAGG_C:1044,0,1459,1156,1543,2699:1286474:22,15,15,13 +chrX 1286488 . A . . END=1286569 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,107,1740 +chrX 1286570 . CAAAAA C,CAAAA, 1692.02 . AS_QUALapprox=|973|741|0;AS_VarDP=0|26|29|0;DP=69;QUALapprox=1709;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=55 GT:AD:DP:GQ:PL:SB 1/2:0,26,29,0:55:99:1709,736,1335,1055,0,968,1796,1113,1071,2097:0,0,29,26 +chrX 1286576 . A . . END=1287077 GT:DP:GQ:MIN_DP:PL 0/0:59:88:59:0,88,1487 +chrX 1287078 . T C, 856.64 . AS_QUALapprox=|864|0;AS_VarDP=30|31|0;BaseQRankSum=0.841;DP=63;MQRankSum=0.000;QUALapprox=864;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=-1.638;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:30,31,0:61:99:864,0,770,954,863,1817:14,16,18,13 +chrX 1287079 . A . . END=1287206 GT:DP:GQ:MIN_DP:PL 0/0:62:47:38:0,47,1033 +chrX 1287207 . A G, 721.64 . AS_QUALapprox=|729|0;AS_VarDP=15|25|0;BaseQRankSum=-0.061;DP=41;MQRankSum=0.000;QUALapprox=729;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147600,41;ReadPosRankSum=0.279;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:15,25,0:40:99:729,0,376,773,452,1225:3,12,7,18 +chrX 1287208 . C . . END=1287353 GT:DP:GQ:MIN_DP:PL 0/0:48:53:48:0,53,1261 +chrX 1287354 . A C, 1745.06 . AS_QUALapprox=|1759|0;AS_VarDP=0|40|0;DP=41;QUALapprox=1759;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147600,41;VarDP=40 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,40,0:40:99:0|1:1287354_A_C:1759,120,0,1759,120,1759:1287354:0,0,17,23 +chrX 1287355 . T . . END=1287360 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,111,1665 +chrX 1287361 . C T, 1745.06 . AS_QUALapprox=|1759|0;AS_VarDP=0|40|0;DP=41;QUALapprox=1759;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147025,41;VarDP=40 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,40,0:40:99:0|1:1287354_A_C:1759,120,0,1759,120,1759:1287354:0,0,17,23 +chrX 1287362 . C . . END=1287456 GT:DP:GQ:MIN_DP:PL 0/0:50:87:50:0,87,1330 +chrX 1287457 . T G, 1493.06 . AS_QUALapprox=|1507|0;AS_VarDP=0|48|0;DP=50;QUALapprox=1507;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=48 GT:AD:DP:GQ:PL:SB 1/1:0,48,0:48:99:1507,144,0,1507,144,1507:0,0,24,24 +chrX 1287458 . T . . END=1287548 GT:DP:GQ:MIN_DP:PL 0/0:56:70:56:0,70,1483 +chrX 1287549 . T . . END=1287549 GT:DP:GQ:MIN_DP:PL 0/0:52:13:52:0,13,1441 +chrX 1287550 . T . . END=1287987 GT:DP:GQ:MIN_DP:PL 0/0:53:36:52:0,36,1263 +chrX 1287988 . T C, 1473.06 . AS_QUALapprox=|1487|0;AS_VarDP=0|48|0;DP=51;QUALapprox=1487;RAW_GT_COUNT=0,0,1;RAW_MQandDP=168655,51;VarDP=48 GT:AD:DP:GQ:PL:SB 1/1:0,48,0:48:99:1487,144,0,1487,144,1487:0,0,17,31 +chrX 1287989 . G . . END=1288101 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1288102 . A G, 1894.06 . AS_QUALapprox=|1908|0;AS_VarDP=0|62|0;DP=64;QUALapprox=1908;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:0,62,0:62:99:1908,185,0,1908,185,1908:0,0,30,32 +chrX 1288103 . G . . END=1288233 GT:DP:GQ:MIN_DP:PL 0/0:48:77:48:0,77,1042 +chrX 1288234 . C . . END=1288273 GT:DP:GQ:MIN_DP:PL 0/0:24:0:24:0,0,397 +chrX 1288274 . G C, 523.91 . AS_QUALapprox=|543|0;AS_VarDP=1|13|0;BaseQRankSum=0.000;DP=18;MQRankSum=2.071;QUALapprox=543;RAW_GT_COUNT=0,1,0;RAW_MQandDP=58125,18;ReadPosRankSum=-0.498;VarDP=14 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:1,13,0:14:3:0|1:1288274_G_C:543,0,3,549,45,633:1288274:0,1,7,6 +chrX 1288275 . A . . END=1288278 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,307 +chrX 1288279 . T C, 518.77 . AS_QUALapprox=|542|0;AS_VarDP=1|13|0;BaseQRankSum=-0.348;DP=17;MQRankSum=2.071;QUALapprox=542;RAW_GT_COUNT=0,1,0;RAW_MQandDP=54525,17;ReadPosRankSum=-0.498;VarDP=14 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:1,13,0:14:2:0|1:1288274_G_C:542,0,2,545,42,587:1288274:0,1,7,6 +chrX 1288280 . G . . END=1288296 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,282 +chrX 1288297 . C T, 392.26 . AS_QUALapprox=|416|0;AS_VarDP=1|10|0;BaseQRankSum=0.000;DP=14;MQRankSum=1.810;QUALapprox=416;RAW_GT_COUNT=0,1,0;RAW_MQandDP=43725,14;ReadPosRankSum=-0.160;VarDP=11 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:1,10,0:11:11:0|1:1288297_C_T:416,0,11,419,42,461:1288297:0,1,4,6 +chrX 1288298 . A *,G, 392.26 . AS_QUALapprox=|0|416|0;AS_VarDP=1|2|10|0;BaseQRankSum=0.000;DP=14;MQRankSum=1.988;QUALapprox=418;RAW_GT_COUNT=0,0,1;RAW_MQandDP=43725,14;ReadPosRankSum=-0.403;VarDP=13 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|2:1,2,10,0:13:2:0|1:1288297_C_T:418,378,416,2,0,13,421,420,44,463:1288297:0,1,6,6 +chrX 1288299 . T . . END=1288374 GT:DP:GQ:MIN_DP:PL 0/0:2:0:2:0,0,0 +chrX 1288375 . G A, 146.04 . AS_QUALapprox=|160|0;AS_VarDP=0|5|0;DP=5;QUALapprox=160;RAW_GT_COUNT=0,0,1;RAW_MQandDP=10913,5;VarDP=5 GT:AD:DP:GQ:PL:SB 1/1:0,5,0:5:13:160,13,0,160,13,160:0,0,2,3 +chrX 1288376 . G . . END=1288384 GT:DP:GQ:MIN_DP:PL 0/0:6:9:6:0,9,135 +chrX 1288385 . G . . END=1288387 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,315 +chrX 1288388 . G A, 391.05 . AS_QUALapprox=|405|0;AS_VarDP=0|9|0;DP=9;QUALapprox=405;RAW_GT_COUNT=0,0,1;RAW_MQandDP=22389,9;VarDP=9 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,9,0:9:27:0|1:1288388_G_A:405,27,0,405,27,405:1288388:0,0,4,5 +chrX 1288389 . G . . END=1288395 GT:DP:GQ:MIN_DP:PL 0/0:11:24:10:0,24,360 +chrX 1288396 . T C, 571.06 . AS_QUALapprox=|585|0;AS_VarDP=0|13|0;DP=13;QUALapprox=585;RAW_GT_COUNT=0,0,1;RAW_MQandDP=36789,13;VarDP=13 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,13,0:13:39:0|1:1288388_G_A:585,39,0,585,39,585:1288388:0,0,7,6 +chrX 1288397 . G . . END=1288397 GT:DP:GQ:MIN_DP:PL 0/0:13:36:13:0,36,540 +chrX 1288398 . C G, 571.06 . AS_QUALapprox=|585|0;AS_VarDP=0|13|0;DP=13;QUALapprox=585;RAW_GT_COUNT=0,0,1;RAW_MQandDP=36789,13;VarDP=13 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,13,0:13:39:0|1:1288388_G_A:585,39,0,585,39,585:1288388:0,0,7,6 +chrX 1288399 . T . . END=1288405 GT:DP:GQ:MIN_DP:PL 0/0:15:36:14:0,36,540 +chrX 1288406 . T C, 706.06 . AS_QUALapprox=|720|0;AS_VarDP=0|16|0;DP=16;QUALapprox=720;RAW_GT_COUNT=0,0,1;RAW_MQandDP=47589,16;VarDP=16 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,16,0:16:48:0|1:1288388_G_A:720,48,0,720,48,720:1288388:0,0,10,6 +chrX 1288407 . G A, 706.06 . AS_QUALapprox=|720|0;AS_VarDP=0|16|0;DP=16;QUALapprox=720;RAW_GT_COUNT=0,0,1;RAW_MQandDP=47589,16;VarDP=16 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,16,0:16:48:0|1:1288388_G_A:720,48,0,720,48,720:1288388:0,0,10,6 +chrX 1288408 . G . . END=1288408 GT:DP:GQ:MIN_DP:PL 0/0:16:45:16:0,45,675 +chrX 1288409 . A G, 751.06 . AS_QUALapprox=|765|0;AS_VarDP=0|17|0;DP=17;QUALapprox=765;RAW_GT_COUNT=0,0,1;RAW_MQandDP=51189,17;VarDP=17 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,17,0:17:51:0|1:1288388_G_A:765,51,0,765,51,765:1288388:0,0,11,6 +chrX 1288410 . A . . END=1288412 GT:DP:GQ:MIN_DP:PL 0/0:17:48:17:0,48,720 +chrX 1288413 . C T, 975.06 . AS_QUALapprox=|989|0;AS_VarDP=0|22|0;DP=22;QUALapprox=989;RAW_GT_COUNT=0,0,1;RAW_MQandDP=69189,22;VarDP=22 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,22,0:22:66:0|1:1288388_G_A:989,66,0,989,66,989:1288388:0,0,12,10 +chrX 1288414 . G . . END=1288421 GT:DP:GQ:MIN_DP:PL 0/0:23:54:23:0,54,735 +chrX 1288422 . T C, 1114.06 . AS_QUALapprox=|1128|0;AS_VarDP=0|26|0;DP=26;QUALapprox=1128;RAW_GT_COUNT=0,0,1;RAW_MQandDP=83589,26;VarDP=26 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,26,0:26:78:0|1:1288388_G_A:1128,78,0,1128,78,1128:1288388:0,0,14,12 +chrX 1288423 . A . . END=1288423 GT:DP:GQ:MIN_DP:PL 0/0:24:69:24:0,69,1035 +chrX 1288424 . G A, 1114.06 . AS_QUALapprox=|1128|0;AS_VarDP=0|26|0;DP=27;QUALapprox=1128;RAW_GT_COUNT=0,0,1;RAW_MQandDP=87189,27;VarDP=26 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,26,0:26:78:0|1:1288388_G_A:1128,78,0,1128,78,1128:1288388:0,0,14,12 +chrX 1288425 . T . . END=1288902 GT:DP:GQ:MIN_DP:PL 0/0:61:87:61:0,87,907 +chrX 1288903 . CAT C, 2496.03 . AS_QUALapprox=|2510|0;AS_VarDP=0|56|0;DP=59;QUALapprox=2510;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:2510,169,0,2510,169,2510:0,0,27,29 +chrX 1288906 . G . . END=1289740 GT:DP:GQ:MIN_DP:PL 0/0:60:22:60:0,22,1404 +chrX 1289741 . C . . END=1289741 GT:DP:GQ:MIN_DP:PL 0/0:61:0:61:0,0,1354 +chrX 1289742 . T . . END=1289782 GT:DP:GQ:MIN_DP:PL 0/0:66:48:66:0,48,1502 +chrX 1289783 . C . . END=1289784 GT:DP:GQ:MIN_DP:PL 0/0:69:0:69:0,0,1139 +chrX 1289785 . T . . END=1289788 GT:DP:GQ:MIN_DP:PL 0/0:74:99:74:0,120,1800 +chrX 1289789 . G . . END=1289789 GT:DP:GQ:MIN_DP:PL 0/0:67:0:67:0,0,1692 +chrX 1289790 . T . . END=1289793 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 1289794 . G . . END=1289794 GT:DP:GQ:MIN_DP:PL 0/0:66:0:66:0,0,1577 +chrX 1289795 . T . . END=1289800 GT:DP:GQ:MIN_DP:PL 0/0:70:46:70:0,46,1634 +chrX 1289801 . G . . END=1289801 GT:DP:GQ:MIN_DP:PL 0/0:63:0:63:0,0,1534 +chrX 1289802 . T . . END=1289806 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1289807 . G . . END=1289807 GT:DP:GQ:MIN_DP:PL 0/0:61:0:61:0,0,1447 +chrX 1289808 . T . . END=1289808 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 1289809 . G . . END=1289809 GT:DP:GQ:MIN_DP:PL 0/0:59:0:59:0,0,1475 +chrX 1289810 . T . . END=1289813 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 1289814 . G . . END=1289814 GT:DP:GQ:MIN_DP:PL 0/0:60:0:60:0,0,1410 +chrX 1289815 . T . . END=1289818 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 1289819 . G . . END=1289819 GT:DP:GQ:MIN_DP:PL 0/0:56:0:56:0,0,1222 +chrX 1289820 . T . . END=1289823 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1289824 . G . . END=1289824 GT:DP:GQ:MIN_DP:PL 0/0:52:0:52:0,0,1331 +chrX 1289825 . T . . END=1289825 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1289826 . G . . END=1289826 GT:DP:GQ:MIN_DP:PL 0/0:55:0:55:0,0,1326 +chrX 1289827 . T . . END=1289829 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1289830 . G . . END=1289830 GT:DP:GQ:MIN_DP:PL 0/0:54:0:54:0,0,1290 +chrX 1289831 . T . . END=1289835 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1289836 . G . . END=1289836 GT:DP:GQ:MIN_DP:PL 0/0:56:0:56:0,0,1212 +chrX 1289837 . T . . END=1289840 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1289841 . G . . END=1289841 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,1203 +chrX 1289842 . T . . END=1289845 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1289846 . G . . END=1289846 GT:DP:GQ:MIN_DP:PL 0/0:51:13:51:0,13,1076 +chrX 1289847 . T . . END=1289861 GT:DP:GQ:MIN_DP:PL 0/0:45:88:45:0,88,1116 +chrX 1289862 . G . . END=1289862 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,1042 +chrX 1289863 . T . . END=1289866 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1289867 . G . . END=1289867 GT:DP:GQ:MIN_DP:PL 0/0:50:0:50:0,0,1171 +chrX 1289868 . T . . END=1289868 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1289869 . G . . END=1289869 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1186 +chrX 1289870 . T . . END=1289873 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 1289874 . G . . END=1289874 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,1182 +chrX 1289875 . T . . END=1289875 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 1289876 . G . . END=1289876 GT:DP:GQ:MIN_DP:PL 0/0:52:2:52:0,2,1288 +chrX 1289877 . T . . END=1289883 GT:DP:GQ:MIN_DP:PL 0/0:56:31:48:0,31,1261 +chrX 1289884 . G . . END=1289884 GT:DP:GQ:MIN_DP:PL 0/0:46:4:46:0,4,1100 +chrX 1289885 . T . . END=1289888 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 1289889 . G . . END=1289889 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,1078 +chrX 1289890 . T . . END=1289893 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 1289894 . G . . END=1289894 GT:DP:GQ:MIN_DP:PL 0/0:47:7:47:0,7,1185 +chrX 1289895 . T . . END=1289898 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1289899 . G . . END=1289899 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,1084 +chrX 1289900 . T . . END=1289900 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1289901 . G . . END=1289901 GT:DP:GQ:MIN_DP:PL 0/0:50:0:50:0,0,1042 +chrX 1289902 . T . . END=1289906 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1289907 . G . . END=1289907 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,894 +chrX 1289908 . T . . END=1289913 GT:DP:GQ:MIN_DP:PL 0/0:51:32:42:0,32,1090 +chrX 1289914 . G . . END=1289914 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,1059 +chrX 1289915 . T . . END=1289919 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 1289920 . G . . END=1289920 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,889 +chrX 1289921 . T . . END=1289921 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,114,1710 +chrX 1289922 . G . . END=1289922 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,1072 +chrX 1289923 . T . . END=1289926 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,102,1475 +chrX 1289927 . G . . END=1289927 GT:DP:GQ:MIN_DP:PL 0/0:39:8:39:0,8,977 +chrX 1289928 . T . . END=1289931 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,117,1514 +chrX 1289932 . G . . END=1289932 GT:DP:GQ:MIN_DP:PL 0/0:39:18:39:0,18,977 +chrX 1289933 . T . . END=1289936 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,117,1755 +chrX 1289937 . G . . END=1289937 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,649 +chrX 1289938 . T . . END=1289938 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,120,1800 +chrX 1289939 . G . . END=1289939 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,842 +chrX 1289940 . T . . END=1289951 GT:DP:GQ:MIN_DP:PL 0/0:44:21:38:0,21,944 +chrX 1289952 . G . . END=1289952 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,991 +chrX 1289953 . T . . END=1289958 GT:DP:GQ:MIN_DP:PL 0/0:44:24:41:0,24,1026 +chrX 1289959 . G . . END=1289959 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,976 +chrX 1289960 . T . . END=1289962 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,119,1468 +chrX 1289963 . G . . END=1289963 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,901 +chrX 1289964 . T . . END=1289968 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,106,1444 +chrX 1289969 . G . . END=1289969 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,844 +chrX 1289970 . T . . END=1289973 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 1289974 . G . . END=1289974 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,938 +chrX 1289975 . T . . END=1289980 GT:DP:GQ:MIN_DP:PL 0/0:48:43:48:0,43,1026 +chrX 1289981 . G . . END=1289981 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,877 +chrX 1289982 . T . . END=1289988 GT:DP:GQ:MIN_DP:PL 0/0:47:60:47:0,60,1070 +chrX 1289989 . G . . END=1289989 GT:DP:GQ:MIN_DP:PL 0/0:40:1:40:0,1,952 +chrX 1289990 . T . . END=1289994 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,100,1385 +chrX 1289995 . G . . END=1289995 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,704 +chrX 1289996 . T . . END=1289999 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,120,1800 +chrX 1290000 . G . . END=1290000 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,744 +chrX 1290001 . T . . END=1290001 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,104,1325 +chrX 1290002 . G . . END=1290002 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,779 +chrX 1290003 . T . . END=1290006 GT:DP:GQ:MIN_DP:PL 0/0:43:80:43:0,80,1276 +chrX 1290007 . G . . END=1290007 GT:DP:GQ:MIN_DP:PL 0/0:40:17:40:0,17,963 +chrX 1290008 . T . . END=1290008 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,120,1800 +chrX 1290009 . G . . END=1290009 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,887 +chrX 1290010 . T . . END=1290013 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,120,1800 +chrX 1290014 . G . . END=1290014 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,1007 +chrX 1290015 . T . . END=1290070 GT:DP:GQ:MIN_DP:PL 0/0:41:34:40:0,34,1036 +chrX 1290071 . A . . END=1290071 GT:DP:GQ:MIN_DP:PL 0/0:38:3:38:0,3,790 +chrX 1290072 . T . . END=1290128 GT:DP:GQ:MIN_DP:PL 0/0:35:81:35:0,81,872 +chrX 1290129 . G . . END=1290129 GT:DP:GQ:MIN_DP:PL 0/0:55:0:55:0,0,1404 +chrX 1290130 . T . . END=1290133 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1290134 . G . . END=1290134 GT:DP:GQ:MIN_DP:PL 0/0:58:0:58:0,0,1380 +chrX 1290135 . T . . END=1290149 GT:DP:GQ:MIN_DP:PL 0/0:57:33:52:0,33,1449 +chrX 1290150 . C . . END=1290151 GT:DP:GQ:MIN_DP:PL 0/0:50:0:50:0,0,1036 +chrX 1290152 . T . . END=1290162 GT:DP:GQ:MIN_DP:PL 0/0:57:27:52:0,27,1348 +chrX 1290163 . G . . END=1290163 GT:DP:GQ:MIN_DP:PL 0/0:50:0:50:0,0,1290 +chrX 1290164 . T . . END=1290168 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1290169 . G . . END=1290169 GT:DP:GQ:MIN_DP:PL 0/0:52:0:52:0,0,1240 +chrX 1290170 . T . . END=1290173 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,112,1772 +chrX 1290174 . G . . END=1290174 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,1023 +chrX 1290175 . T . . END=1290175 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1290176 . G . . END=1290176 GT:DP:GQ:MIN_DP:PL 0/0:52:0:52:0,0,1252 +chrX 1290177 . T . . END=1290180 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 1290181 . G . . END=1290181 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,1152 +chrX 1290182 . T . . END=1290182 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1290183 . G . . END=1290183 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,1179 +chrX 1290184 . T . . END=1290188 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 1290189 . G . . END=1290189 GT:DP:GQ:MIN_DP:PL 0/0:43:6:43:0,6,1117 +chrX 1290190 . T . . END=1290190 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 1290191 . G . . END=1290193 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,894 +chrX 1290194 . T . . END=1290201 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,109,1518 +chrX 1290202 . G . . END=1290202 GT:DP:GQ:MIN_DP:PL 0/0:45:7:45:0,7,1106 +chrX 1290203 . T . . END=1290206 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 1290207 . G . . END=1290207 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,992 +chrX 1290208 . T . . END=1290208 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 1290209 . G . . END=1290209 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,1042 +chrX 1290210 . T . . END=1290219 GT:DP:GQ:MIN_DP:PL 0/0:49:45:49:0,45,1175 +chrX 1290220 . G . . END=1290220 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,1052 +chrX 1290221 . T . . END=1290221 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 1290222 . G . . END=1290222 GT:DP:GQ:MIN_DP:PL 0/0:46:19:46:0,19,1200 +chrX 1290223 . T . . END=1290227 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 1290228 . G . . END=1290228 GT:DP:GQ:MIN_DP:PL 0/0:48:17:48:0,17,1232 +chrX 1290229 . T . . END=1291341 GT:DP:GQ:MIN_DP:PL 0/0:26:23:24:0,23,604 +chrX 1291342 . C . . END=1291342 GT:DP:GQ:MIN_DP:PL 0/0:21:14:21:0,14,561 +chrX 1291343 . C . . END=1291343 GT:DP:GQ:MIN_DP:PL 0/0:19:22:19:0,22,581 +chrX 1291344 . T . . END=1291357 GT:DP:GQ:MIN_DP:PL 0/0:17:0:17:0,0,421 +chrX 1291358 . C . . END=1291359 GT:DP:GQ:MIN_DP:PL 0/0:20:22:20:0,22,571 +chrX 1291360 . T . . END=1291360 GT:DP:GQ:MIN_DP:PL 0/0:20:1:20:0,1,546 +chrX 1291361 . C . . END=1291419 GT:DP:GQ:MIN_DP:PL 0/0:21:22:19:0,22,561 +chrX 1291420 . A . . END=1291420 GT:DP:GQ:MIN_DP:PL 0/0:32:13:32:0,13,715 +chrX 1291421 . T . . END=1293738 GT:DP:GQ:MIN_DP:PL 0/0:40:26:31:0,26,899 +chrX 1293739 . T . . END=1293740 GT:DP:GQ:MIN_DP:PL 0/0:33:5:33:0,5,838 +chrX 1293741 . C . . END=1293744 GT:DP:GQ:MIN_DP:PL 0/0:35:28:34:0,28,882 +chrX 1293745 . G . . END=1293745 GT:DP:GQ:MIN_DP:PL 0/0:30:6:30:0,6,744 +chrX 1293746 . T . . END=1293831 GT:DP:GQ:MIN_DP:PL 0/0:32:30:31:0,30,807 +chrX 1293832 . A . . END=1293832 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,695 +chrX 1293833 . C . . END=1293907 GT:DP:GQ:MIN_DP:PL 0/0:41:65:41:0,65,1091 +chrX 1293908 . A . . END=1293908 GT:DP:GQ:MIN_DP:PL 0/0:45:15:45:0,15,1042 +chrX 1293909 . A . . END=1293934 GT:DP:GQ:MIN_DP:PL 0/0:45:32:45:0,32,1177 +chrX 1293935 . C . . END=1293935 GT:DP:GQ:MIN_DP:PL 0/0:41:19:41:0,19,1116 +chrX 1293936 . C . . END=1293955 GT:DP:GQ:MIN_DP:PL 0/0:43:40:43:0,40,1121 +chrX 1293956 . T . . END=1293956 GT:DP:GQ:MIN_DP:PL 0/0:44:14:44:0,14,1041 +chrX 1293957 . T . . END=1293965 GT:DP:GQ:MIN_DP:PL 0/0:46:29:45:0,29,1189 +chrX 1293966 . T . . END=1293966 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,1006 +chrX 1293967 . A . . END=1293977 GT:DP:GQ:MIN_DP:PL 0/0:45:42:45:0,42,1265 +chrX 1293978 . C . . END=1293978 GT:DP:GQ:MIN_DP:PL 0/0:44:13:44:0,13,1181 +chrX 1293979 . C . . END=1294096 GT:DP:GQ:MIN_DP:PL 0/0:42:44:42:0,44,1051 +chrX 1294097 . T . . END=1294097 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,1052 +chrX 1294098 . A . . END=1294250 GT:DP:GQ:MIN_DP:PL 0/0:46:27:42:0,27,911 +chrX 1294251 . T . . END=1294251 GT:DP:GQ:MIN_DP:PL 0/0:51:19:51:0,19,1364 +chrX 1294252 . C . . END=1294834 GT:DP:GQ:MIN_DP:PL 0/0:54:31:50:0,31,1288 +chrX 1294835 . C . . END=1294835 GT:DP:GQ:MIN_DP:PL 0/0:57:0:57:0,0,1384 +chrX 1294836 . A . . END=1295951 GT:DP:GQ:MIN_DP:PL 0/0:55:24:39:0,24,996 +chrX 1295952 . T . . END=1295952 GT:DP:GQ:MIN_DP:PL 0/0:44:12:44:0,12,1058 +chrX 1295953 . C . . END=1296324 GT:DP:GQ:MIN_DP:PL 0/0:41:37:37:0,37,967 +chrX 1296325 . C . . END=1296325 GT:DP:GQ:MIN_DP:PL 0/0:42:7:42:0,7,1091 +chrX 1296326 . T . . END=1296376 GT:DP:GQ:MIN_DP:PL 0/0:35:37:32:0,37,868 +chrX 1296377 . G . . END=1296377 GT:DP:GQ:MIN_DP:PL 0/0:27:0:27:0,0,610 +chrX 1296378 . T . . END=1296467 GT:DP:GQ:MIN_DP:PL 0/0:27:35:26:0,35,610 +chrX 1296468 . G . . END=1296468 GT:DP:GQ:MIN_DP:PL 0/0:21:0:21:0,0,452 +chrX 1296469 . T . . END=1296555 GT:DP:GQ:MIN_DP:PL 0/0:21:26:16:0,26,447 +chrX 1296556 . T . . END=1296556 GT:DP:GQ:MIN_DP:PL 0/0:15:16:15:0,16,403 +chrX 1296557 . C . . END=1296600 GT:DP:GQ:MIN_DP:PL 0/0:20:21:17:0,21,471 +chrX 1296601 . A . . END=1296601 GT:DP:GQ:MIN_DP:PL 0/0:20:10:20:0,10,526 +chrX 1296602 . C . . END=1296632 GT:DP:GQ:MIN_DP:PL 0/0:21:22:19:0,22,515 +chrX 1296633 . G . . END=1296633 GT:DP:GQ:MIN_DP:PL 0/0:18:5:18:0,5,427 +chrX 1296634 . G . . END=1296666 GT:DP:GQ:MIN_DP:PL 0/0:17:26:17:0,26,491 +chrX 1296667 . G . . END=1296667 GT:DP:GQ:MIN_DP:PL 0/0:15:10:15:0,10,392 +chrX 1296668 . T . . END=1296669 GT:DP:GQ:MIN_DP:PL 0/0:16:36:16:0,36,540 +chrX 1296670 . T . . END=1296670 GT:DP:GQ:MIN_DP:PL 0/0:15:0:15:0,0,372 +chrX 1296671 . C . . END=1296688 GT:DP:GQ:MIN_DP:PL 0/0:13:27:12:0,27,405 +chrX 1296689 . A . . END=1296689 GT:DP:GQ:MIN_DP:PL 0/0:10:5:10:0,5,207 +chrX 1296690 . G . . END=1296690 GT:DP:GQ:MIN_DP:PL 0/0:9:27:9:0,27,262 +chrX 1296691 . G . . END=1296692 GT:DP:GQ:MIN_DP:PL 0/0:8:16:8:0,16,209 +chrX 1296693 . A . . END=1296696 GT:DP:GQ:MIN_DP:PL 0/0:9:24:9:0,24,248 +chrX 1296697 . T . . END=1296697 GT:DP:GQ:MIN_DP:PL 0/0:9:13:9:0,13,264 +chrX 1296698 . A . . END=1296702 GT:DP:GQ:MIN_DP:PL 0/0:10:24:10:0,24,313 +chrX 1296703 . C . . END=1296703 GT:DP:GQ:MIN_DP:PL 0/0:10:16:10:0,16,299 +chrX 1296704 . C . . END=1296734 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,233 +chrX 1296735 . A . . END=1296735 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,170 +chrX 1296736 . T . . END=1296741 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,315 +chrX 1296742 . C . . END=1296745 GT:DP:GQ:MIN_DP:PL 0/0:7:18:7:0,18,199 +chrX 1296746 . C . . END=1296746 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,243 +chrX 1296747 . G . . END=1296749 GT:DP:GQ:MIN_DP:PL 0/0:7:0:7:0,0,164 +chrX 1296750 . A . . END=1296750 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,315 +chrX 1296751 . C . . END=1296771 GT:DP:GQ:MIN_DP:PL 0/0:6:0:6:0,0,114 +chrX 1296772 . A . . END=1296780 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,223 +chrX 1296781 . G . . END=1296781 GT:DP:GQ:MIN_DP:PL 0/0:4:12:4:0,12,139 +chrX 1296782 . T . . END=1296791 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,233 +chrX 1296792 . A . . END=1296792 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,209 +chrX 1296793 . T . . END=1296793 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,315 +chrX 1296794 . G . . END=1296794 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,209 +chrX 1296795 . A . . END=1296804 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,203 +chrX 1296805 . G . . END=1296830 GT:DP:GQ:MIN_DP:PL 0/0:7:0:7:0,0,147 +chrX 1296831 . C . . END=1296831 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,233 +chrX 1296832 . C . . END=1296834 GT:DP:GQ:MIN_DP:PL 0/0:7:0:7:0,0,35 +chrX 1296835 . A . . END=1296837 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,233 +chrX 1296838 . G . . END=1296838 GT:DP:GQ:MIN_DP:PL 0/0:7:7:7:0,7,184 +chrX 1296839 . T . . END=1296840 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,315 +chrX 1296841 . T . . END=1296845 GT:DP:GQ:MIN_DP:PL 0/0:7:9:7:0,9,199 +chrX 1296846 . C . . END=1296851 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,203 +chrX 1296852 . A . . END=1296852 GT:DP:GQ:MIN_DP:PL 0/0:4:12:4:0,12,139 +chrX 1296853 . C . . END=1296860 GT:DP:GQ:MIN_DP:PL 0/0:10:24:8:0,24,258 +chrX 1296861 . A . . END=1296861 GT:DP:GQ:MIN_DP:PL 0/0:9:0:9:0,0,104 +chrX 1296862 . G . . END=1296866 GT:DP:GQ:MIN_DP:PL 0/0:12:30:12:0,30,328 +chrX 1296867 . C . . END=1296867 GT:DP:GQ:MIN_DP:PL 0/0:9:0:9:0,0,233 +chrX 1296868 . T . . END=1296923 GT:DP:GQ:MIN_DP:PL 0/0:17:30:13:0,30,328 +chrX 1296924 . G . . END=1296924 GT:DP:GQ:MIN_DP:PL 0/0:19:8:19:0,8,471 +chrX 1296925 . T . . END=1296951 GT:DP:GQ:MIN_DP:PL 0/0:21:54:21:0,54,590 +chrX 1296952 . G . . END=1296952 GT:DP:GQ:MIN_DP:PL 0/0:18:19:18:0,19,475 +chrX 1296953 . T . . END=1296973 GT:DP:GQ:MIN_DP:PL 0/0:19:45:19:0,45,530 +chrX 1296974 . C . . END=1296974 GT:DP:GQ:MIN_DP:PL 0/0:16:13:16:0,13,437 +chrX 1296975 . G . . END=1296980 GT:DP:GQ:MIN_DP:PL 0/0:16:31:15:0,31,462 +chrX 1296981 . G . . END=1296981 GT:DP:GQ:MIN_DP:PL 0/0:17:0:17:0,0,332 +chrX 1296982 . T . . END=1297020 GT:DP:GQ:MIN_DP:PL 0/0:21:22:19:0,22,581 +chrX 1297021 . A . . END=1297021 GT:DP:GQ:MIN_DP:PL 0/0:24:0:24:0,0,595 +chrX 1297022 . G . . END=1297067 GT:DP:GQ:MIN_DP:PL 0/0:21:28:15:0,28,442 +chrX 1297068 . T C, 62.64 . AS_QUALapprox=|70|0;AS_VarDP=9|6|0;BaseQRankSum=-1.640;DP=18;MQRankSum=1.731;QUALapprox=70;RAW_GT_COUNT=0,1,0;RAW_MQandDP=31987,18;ReadPosRankSum=0.573;VarDP=15 GT:AD:DP:GQ:PL:SB 0/1:9,6,0:15:70:70,0,199,96,215,311:4,5,5,1 +chrX 1297069 . T . . END=1297167 GT:DP:GQ:MIN_DP:PL 0/0:27:28:21:0,28,579 +chrX 1297168 . A . . END=1297168 GT:DP:GQ:MIN_DP:PL 0/0:30:16:30:0,16,734 +chrX 1297169 . C . . END=1297175 GT:DP:GQ:MIN_DP:PL 0/0:29:49:29:0,49,778 +chrX 1297176 . T . . END=1297176 GT:DP:GQ:MIN_DP:PL 0/0:26:19:26:0,19,704 +chrX 1297177 . A . . END=1297258 GT:DP:GQ:MIN_DP:PL 0/0:17:20:14:0,20,385 +chrX 1297259 . A . . END=1297259 GT:DP:GQ:MIN_DP:PL 0/0:10:0:10:0,0,199 +chrX 1297260 . G . . END=1297269 GT:DP:GQ:MIN_DP:PL 0/0:15:33:11:0,33,332 +chrX 1297270 . A . . END=1297270 GT:DP:GQ:MIN_DP:PL 0/0:14:3:14:0,3,338 +chrX 1297271 . G . . END=1297276 GT:DP:GQ:MIN_DP:PL 0/0:15:24:12:0,24,332 +chrX 1297277 . T . . END=1297277 GT:DP:GQ:MIN_DP:PL 0/0:13:14:13:0,14,392 +chrX 1297278 . A . . END=1297284 GT:DP:GQ:MIN_DP:PL 0/0:13:28:13:0,28,377 +chrX 1297285 . A . . END=1297285 GT:DP:GQ:MIN_DP:PL 0/0:14:17:14:0,17,377 +chrX 1297286 . C . . END=1297293 GT:DP:GQ:MIN_DP:PL 0/0:12:36:12:0,36,367 +chrX 1297294 . G . . END=1297294 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,273 +chrX 1297295 . T . . END=1297321 GT:DP:GQ:MIN_DP:PL 0/0:11:21:10:0,21,292 +chrX 1297322 . T . . END=1297322 GT:DP:GQ:MIN_DP:PL 0/0:9:2:9:0,2,223 +chrX 1297323 . G . . END=1297323 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,243 +chrX 1297324 . T . . END=1297329 GT:DP:GQ:MIN_DP:PL 0/0:8:18:8:0,18,270 +chrX 1297330 . C . . END=1297339 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,223 +chrX 1297340 . C . . END=1297342 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,188 +chrX 1297343 . C . . END=1297374 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,217 +chrX 1297375 . G . . END=1297386 GT:DP:GQ:MIN_DP:PL 0/0:8:15:8:0,15,225 +chrX 1297387 . C . . END=1297402 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,193 +chrX 1297403 . G . . END=1297403 GT:DP:GQ:MIN_DP:PL 0/0:7:0:7:0,0,64 +chrX 1297404 . T . . END=1297407 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,213 +chrX 1297408 . G . . END=1297408 GT:DP:GQ:MIN_DP:PL 0/0:9:2:9:0,2,192 +chrX 1297409 . T . . END=1297410 GT:DP:GQ:MIN_DP:PL 0/0:9:24:9:0,24,360 +chrX 1297411 . T . . END=1297411 GT:DP:GQ:MIN_DP:PL 0/0:9:13:9:0,13,234 +chrX 1297412 . C . . END=1297430 GT:DP:GQ:MIN_DP:PL 0/0:10:21:10:0,21,283 +chrX 1297431 . A . . END=1297431 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,244 +chrX 1297432 . G . . END=1297440 GT:DP:GQ:MIN_DP:PL 0/0:13:25:12:0,25,332 +chrX 1297441 . A . . END=1297441 GT:DP:GQ:MIN_DP:PL 0/0:13:14:13:0,14,332 +chrX 1297442 . G . . END=1297476 GT:DP:GQ:MIN_DP:PL 0/0:15:20:13:0,20,367 +chrX 1297477 . T . . END=1297478 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,306 +chrX 1297479 . A . . END=1297493 GT:DP:GQ:MIN_DP:PL 0/0:19:23:16:0,23,447 +chrX 1297494 . G . . END=1297494 GT:DP:GQ:MIN_DP:PL 0/0:22:0:22:0,0,475 +chrX 1297495 . T . . END=1297543 GT:DP:GQ:MIN_DP:PL 0/0:26:53:26:0,53,679 +chrX 1297544 . C . . END=1297545 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,609 +chrX 1297546 . G . . END=1297581 GT:DP:GQ:MIN_DP:PL 0/0:31:48:31:0,48,802 +chrX 1297582 . T . . END=1297582 GT:DP:GQ:MIN_DP:PL 0/0:27:0:27:0,0,670 +chrX 1297583 . C . . END=1297600 GT:DP:GQ:MIN_DP:PL 0/0:28:53:28:0,53,763 +chrX 1297601 . A . . END=1297601 GT:DP:GQ:MIN_DP:PL 0/0:27:0:27:0,0,629 +chrX 1297602 . G . . END=1297638 GT:DP:GQ:MIN_DP:PL 0/0:26:34:23:0,34,629 +chrX 1297639 . T . . END=1297639 GT:DP:GQ:MIN_DP:PL 0/0:24:0:24:0,0,606 +chrX 1297640 . C . . END=1297644 GT:DP:GQ:MIN_DP:PL 0/0:25:40:25:0,40,759 +chrX 1297645 . T . . END=1297645 GT:DP:GQ:MIN_DP:PL 0/0:24:0:24:0,0,526 +chrX 1297646 . C . . END=1297659 GT:DP:GQ:MIN_DP:PL 0/0:25:37:24:0,37,704 +chrX 1297660 . T . . END=1297660 GT:DP:GQ:MIN_DP:PL 0/0:28:14:28:0,14,662 +chrX 1297661 . A . . END=1297701 GT:DP:GQ:MIN_DP:PL 0/0:28:35:27:0,35,733 +chrX 1297702 . T . . END=1297702 GT:DP:GQ:MIN_DP:PL 0/0:25:1:25:0,1,610 +chrX 1297703 . C . . END=1297716 GT:DP:GQ:MIN_DP:PL 0/0:29:27:28:0,27,738 +chrX 1297717 . T . . END=1297717 GT:DP:GQ:MIN_DP:PL 0/0:30:16:30:0,16,714 +chrX 1297718 . A . . END=1297757 GT:DP:GQ:MIN_DP:PL 0/0:40:55:40:0,55,897 +chrX 1297758 . A G, 8.60 . AS_QUALapprox=|16|0;AS_VarDP=43|5|0;BaseQRankSum=1.764;DP=51;MQRankSum=0.034;QUALapprox=16;RAW_GT_COUNT=0,1,0;RAW_MQandDP=65536,51;ReadPosRankSum=-0.863;VarDP=48 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:43,5,0:48:16:0|1:1297758_A_G:16,0,1253,145,1268,1412:1297758:31,12,2,3 +chrX 1297759 . C . . END=1297797 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1297798 . C T, 359.64 . AS_QUALapprox=|367|0;AS_VarDP=62|15|0;BaseQRankSum=0.451;DP=78;MQRankSum=0.335;QUALapprox=367;RAW_GT_COUNT=0,1,0;RAW_MQandDP=111311,78;ReadPosRankSum=1.286;VarDP=77 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:62,15,0:77:99:1|0:1297758_A_G:367,0,2302,553,2346,2900:1297758:37,25,11,4 +chrX 1297799 . C . . END=1297841 GT:DP:GQ:MIN_DP:PL 0/0:79:99:79:0,120,1800 +chrX 1297842 . G A, 339.64 . AS_QUALapprox=|347|0;AS_VarDP=63|16|0;BaseQRankSum=-1.392;DP=82;MQRankSum=0.813;QUALapprox=347;RAW_GT_COUNT=0,1,0;RAW_MQandDP=114131,82;ReadPosRankSum=0.764;VarDP=79 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:63,16,0:79:99:1|0:1297758_A_G:347,0,2234,535,2281,2816:1297758:36,27,11,5 +chrX 1297843 . A . . END=1297908 GT:DP:GQ:MIN_DP:PL 0/0:23:28:19:0,28,585 +chrX 1297909 . GTCTCCTACCCATGACCCCTGGCAGAACCCTACAGTCCCCTACTCACGACCCCTACAC G, 161.60 . AS_QUALapprox=|169|0;AS_VarDP=3|6|0;BaseQRankSum=0.566;DP=32;MQRankSum=0.334;QUALapprox=169;RAW_GT_COUNT=0,1,0;RAW_MQandDP=38394,32;ReadPosRankSum=-0.319;VarDP=9 GT:AD:DP:GQ:PL:SB 0/1:3,6,0:9:87:169,0,87,183,115,298:0,3,1,5 +chrX 1297967 . T . . END=1297967 GT:DP:GQ:MIN_DP:PL 0/0:11:19:11:0,19,323 +chrX 1297968 . C . . END=1297968 GT:DP:GQ:MIN_DP:PL 0/0:13:36:13:0,36,540 +chrX 1297969 . T . . END=1297969 GT:DP:GQ:MIN_DP:PL 0/0:12:0:12:0,0,288 +chrX 1297970 . C . . END=1297987 GT:DP:GQ:MIN_DP:PL 0/0:13:39:13:0,39,432 +chrX 1297988 . C . . END=1297990 GT:DP:GQ:MIN_DP:PL 0/0:16:10:16:0,10,405 +chrX 1297991 . A . . END=1298087 GT:DP:GQ:MIN_DP:PL 0/0:18:24:13:0,24,362 +chrX 1298088 . A . . END=1298088 GT:DP:GQ:MIN_DP:PL 0/0:11:8:11:0,8,313 +chrX 1298089 . C . . END=1298096 GT:DP:GQ:MIN_DP:PL 0/0:12:33:12:0,33,362 +chrX 1298097 . T . . END=1298098 GT:DP:GQ:MIN_DP:PL 0/0:11:1:11:0,1,238 +chrX 1298099 . C . . END=1298107 GT:DP:GQ:MIN_DP:PL 0/0:12:24:11:0,24,360 +chrX 1298108 . C . . END=1298286 GT:DP:GQ:MIN_DP:PL 0/0:5:0:5:0,0,0 +chrX 1298287 . A . . END=1298292 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,213 +chrX 1298293 . A . . END=1298293 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,199 +chrX 1298294 . C . . END=1298294 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,213 +chrX 1298295 . A . . END=1298297 GT:DP:GQ:MIN_DP:PL 0/0:6:0:6:0,0,114 +chrX 1298298 . C . . END=1298298 GT:DP:GQ:MIN_DP:PL 0/0:8:24:8:0,24,258 +chrX 1298299 . T . . END=1298299 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,149 +chrX 1298300 . C . . END=1298304 GT:DP:GQ:MIN_DP:PL 0/0:8:24:8:0,24,248 +chrX 1298305 . C . . END=1298305 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,199 +chrX 1298306 . C . . END=1298351 GT:DP:GQ:MIN_DP:PL 0/0:11:24:9:0,24,238 +chrX 1298352 . A . . END=1298353 GT:DP:GQ:MIN_DP:PL 0/0:13:1:13:0,1,297 +chrX 1298354 . T . . END=1298409 GT:DP:GQ:MIN_DP:PL 0/0:15:20:12:0,20,371 +chrX 1298410 . C . . END=1298411 GT:DP:GQ:MIN_DP:PL 0/0:13:11:13:0,11,348 +chrX 1298412 . C . . END=1298572 GT:DP:GQ:MIN_DP:PL 0/0:18:20:14:0,20,331 +chrX 1298573 . C . . END=1298686 GT:DP:GQ:MIN_DP:PL 0/0:26:0:26:0,0,0 +chrX 1298687 . C . . END=1298693 GT:DP:GQ:MIN_DP:PL 0/0:26:21:26:0,21,315 +chrX 1298694 . A . . END=1298694 GT:DP:GQ:MIN_DP:PL 0/0:27:18:27:0,18,270 +chrX 1298695 . T . . END=1298701 GT:DP:GQ:MIN_DP:PL 0/0:29:21:29:0,21,315 +chrX 1298702 . T . . END=1298704 GT:DP:GQ:MIN_DP:PL 0/0:30:15:30:0,15,225 +chrX 1298705 . T . . END=1298748 GT:DP:GQ:MIN_DP:PL 0/0:39:21:33:0,21,315 +chrX 1298749 . CATGACCCCCA C, 891.60 . AS_QUALapprox=|899|0;AS_VarDP=26|24|0;BaseQRankSum=-1.048;DP=52;MQRankSum=-1.232;QUALapprox=899;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165034,52;ReadPosRankSum=0.598;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:26,24,0:50:99:899,0,1004,978,1076,2054:11,15,12,12 +chrX 1298760 . G . . END=1299054 GT:DP:GQ:MIN_DP:PL 0/0:58:98:58:0,98,1514 +chrX 1299055 . A T, 698.64 . AS_QUALapprox=|706|0;AS_VarDP=33|26|0;BaseQRankSum=0.569;DP=61;MQRankSum=0.000;QUALapprox=706;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-0.145;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:33,26,0:59:99:706,0,928,806,1006,1812:16,17,13,13 +chrX 1299056 . T . . END=1300228 GT:DP:GQ:MIN_DP:PL 0/0:67:96:67:0,96,1418 +chrX 1300229 . TAAATA T, 1869.03 . AS_QUALapprox=|1883|0;AS_VarDP=0|44|0;DP=54;QUALapprox=1883;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=44 GT:AD:DP:GQ:PL:SB 1/1:0,44,0:44:99:1883,133,0,1883,133,1883:0,0,21,23 +chrX 1300235 . A . . END=1300242 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,107,1619 +chrX 1300243 . T . . END=1300243 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,1275 +chrX 1300244 . A . . END=1300355 GT:DP:GQ:MIN_DP:PL 0/0:50:31:49:0,31,1369 +chrX 1300356 . A G, 1968.06 . AS_QUALapprox=|1982|0;AS_VarDP=0|66|0;DP=69;QUALapprox=1982;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=66 GT:AD:DP:GQ:PL:SB 1/1:0,66,0:66:99:1982,196,0,1982,196,1982:0,0,30,36 +chrX 1300357 . G . . END=1300406 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 1300407 . C T, 2042.06 . AS_QUALapprox=|2056|0;AS_VarDP=1|66|0;BaseQRankSum=2.115;DP=71;MQRankSum=0.000;QUALapprox=2056;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;ReadPosRankSum=-1.423;VarDP=67 GT:AD:DP:GQ:PL:SB 1/1:1,66,0:67:99:2056,191,0,2058,198,2065:1,0,33,33 +chrX 1300408 . T . . END=1300677 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,115,1518 +chrX 1300678 . C G, 1708.06 . AS_QUALapprox=|1722|0;AS_VarDP=0|52|0;DP=53;QUALapprox=1722;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1722,156,0,1722,156,1722:0,0,23,29 +chrX 1300679 . A . . END=1301173 GT:DP:GQ:MIN_DP:PL 0/0:56:27:53:0,27,1402 +chrX 1301174 . T . . END=1301174 GT:DP:GQ:MIN_DP:PL 0/0:56:0:56:0,0,1277 +chrX 1301175 . A . . END=1301223 GT:DP:GQ:MIN_DP:PL 0/0:51:73:51:0,73,1425 +chrX 1301224 . A G, 1319.06 . AS_QUALapprox=|1333|0;AS_VarDP=0|45|0;DP=47;QUALapprox=1333;RAW_GT_COUNT=0,0,1;RAW_MQandDP=168964,47;VarDP=45 GT:AD:DP:GQ:PL:SB 1/1:0,45,0:45:99:1333,133,0,1333,133,1333:0,0,27,18 +chrX 1301225 . G . . END=1301330 GT:DP:GQ:MIN_DP:PL 0/0:53:75:53:0,75,1216 +chrX 1301331 . CAA C, 390.80 . AS_QUALapprox=|404|0;AS_VarDP=3|17|0;BaseQRankSum=0.746;DP=52;MQRankSum=1.422;QUALapprox=404;RAW_GT_COUNT=0,0,1;RAW_MQandDP=173369,52;ReadPosRankSum=-0.482;VarDP=20 GT:AD:DP:GQ:PL:SB 1/1:3,17,0:20:9:404,9,0,412,50,453:0,3,11,6 +chrX 1301334 . A . . END=1302019 GT:DP:GQ:MIN_DP:PL 0/0:46:20:37:0,20,952 +chrX 1302020 . A G, 486.64 . AS_QUALapprox=|494|0;AS_VarDP=27|19|0;BaseQRankSum=1.214;DP=49;MQRankSum=0.000;QUALapprox=494;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=1.329;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:27,19,0:46:99:494,0,676,573,733,1306:14,13,9,10 +chrX 1302021 . A . . END=1302313 GT:DP:GQ:MIN_DP:PL 0/0:52:31:50:0,31,1298 +chrX 1302314 . G C, 863.64 . AS_QUALapprox=|871|0;AS_VarDP=21|31|0;BaseQRankSum=0.697;DP=53;MQRankSum=0.000;QUALapprox=871;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187776,53;ReadPosRankSum=-1.110;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:21,31,0:52:99:871,0,519,934,612,1547:10,11,19,12 +chrX 1302315 . G . . END=1302902 GT:DP:GQ:MIN_DP:PL 0/0:61:31:50:0,31,1339 +chrX 1302903 . A . . END=1302903 GT:DP:GQ:MIN_DP:PL 0/0:53:0:53:0,0,1316 +chrX 1302904 . C . . END=1303082 GT:DP:GQ:MIN_DP:PL 0/0:58:45:58:0,45,1131 +chrX 1303083 . A . . END=1303083 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,993 +chrX 1303084 . G . . END=1303085 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,114,1710 +chrX 1303086 . T . . END=1303086 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,1013 +chrX 1303087 . T . . END=1303091 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,108,1620 +chrX 1303092 . G . . END=1303092 GT:DP:GQ:MIN_DP:PL 0/0:39:19:39:0,19,1038 +chrX 1303093 . T . . END=1303110 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,105,1251 +chrX 1303111 . G T, 199.64 . AS_QUALapprox=|207|0;AS_VarDP=25|10|0;BaseQRankSum=0.993;DP=37;MQRankSum=-3.258;QUALapprox=207;RAW_GT_COUNT=0,1,0;RAW_MQandDP=93614,37;ReadPosRankSum=1.973;VarDP=35 GT:AD:DP:GQ:PL:SB 0/1:25,10,0:35:99:207,0,627,281,657,937:10,15,7,3 +chrX 1303112 . C . . END=1303190 GT:DP:GQ:MIN_DP:PL 0/0:37:59:37:0,59,848 +chrX 1303191 . G A, 46.64 . AS_QUALapprox=|54|0;AS_VarDP=24|3|0;BaseQRankSum=1.404;DP=28;MQRankSum=-1.004;QUALapprox=54;RAW_GT_COUNT=0,1,0;RAW_MQandDP=82285,28;ReadPosRankSum=-0.734;VarDP=27 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,3,0:27:54:0|1:1303191_G_A:54,0,925,126,934,1060:1303191:11,13,1,2 +chrX 1303192 . G C, 46.64 . AS_QUALapprox=|54|0;AS_VarDP=24|3|0;BaseQRankSum=1.200;DP=28;MQRankSum=-1.004;QUALapprox=54;RAW_GT_COUNT=0,1,0;RAW_MQandDP=82285,28;ReadPosRankSum=-0.734;VarDP=27 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,3,0:27:54:0|1:1303191_G_A:54,0,925,126,934,1060:1303191:11,13,1,2 +chrX 1303193 . G . . END=1303226 GT:DP:GQ:MIN_DP:PL 0/0:31:27:29:0,27,808 +chrX 1303227 . A . . END=1303227 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,775 +chrX 1303228 . A . . END=1303228 GT:DP:GQ:MIN_DP:PL 0/0:31:34:31:0,34,868 +chrX 1303229 . A . . END=1303229 GT:DP:GQ:MIN_DP:PL 0/0:31:9:31:0,9,829 +chrX 1303230 . T . . END=1303236 GT:DP:GQ:MIN_DP:PL 0/0:31:44:31:0,44,899 +chrX 1303237 . A . . END=1303237 GT:DP:GQ:MIN_DP:PL 0/0:31:9:31:0,9,809 +chrX 1303238 . T . . END=1303266 GT:DP:GQ:MIN_DP:PL 0/0:38:20:38:0,20,1031 +chrX 1303267 . A . . END=1303267 GT:DP:GQ:MIN_DP:PL 0/0:48:1:48:0,1,1251 +chrX 1303268 . C . . END=1303974 GT:DP:GQ:MIN_DP:PL 0/0:57:23:55:0,23,1404 +chrX 1303975 . G A, 844.64 . AS_QUALapprox=|852|0;AS_VarDP=26|33|0;BaseQRankSum=-1.729;DP=68;MQRankSum=0.000;QUALapprox=852;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=0.382;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:26,33,0:59:99:852,0,697,931,795,1726:15,11,12,21 +chrX 1303976 . G . . END=1304049 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 1304050 . T C, 516.64 . AS_QUALapprox=|524|0;AS_VarDP=27|20|0;BaseQRankSum=0.052;DP=60;MQRankSum=0.000;QUALapprox=524;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=-0.980;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:27,20,0:47:99:524,0,742,605,803,1408:19,8,6,14 +chrX 1304051 . G . . END=1304145 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1304146 . T C, 339.64 . AS_QUALapprox=|347|0;AS_VarDP=37|16|0;BaseQRankSum=-0.962;DP=63;MQRankSum=-3.845;QUALapprox=347;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212781,63;ReadPosRankSum=1.415;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:37,16,0:53:99:347,0,1057,458,1105,1563:22,15,4,12 +chrX 1304147 . G . . END=1304182 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,116,1622 +chrX 1304183 . T . . END=1304183 GT:DP:GQ:MIN_DP:PL 0/0:53:0:53:0,0,710 +chrX 1304184 . G . . END=1304191 GT:DP:GQ:MIN_DP:PL 0/0:53:24:51:0,24,1344 +chrX 1304192 . A . . END=1304192 GT:DP:GQ:MIN_DP:PL 0/0:51:14:51:0,14,1375 +chrX 1304193 . G . . END=1304196 GT:DP:GQ:MIN_DP:PL 0/0:51:84:51:0,84,1514 +chrX 1304197 . A . . END=1304197 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,997 +chrX 1304198 . G . . END=1304201 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,110,1484 +chrX 1304202 . A . . END=1304202 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,1022 +chrX 1304203 . T . . END=1304211 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,112,1446 +chrX 1304212 . T . . END=1304212 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,988 +chrX 1304213 . C . . END=1304216 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,105,1459 +chrX 1304217 . G . . END=1304217 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,1003 +chrX 1304218 . C . . END=1304218 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,111,1665 +chrX 1304219 . T . . END=1304219 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,867 +chrX 1304220 . A . . END=1304222 GT:DP:GQ:MIN_DP:PL 0/0:43:91:43:0,91,1300 +chrX 1304223 . A . . END=1304225 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,903 +chrX 1304226 . G . . END=1304226 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,108,1390 +chrX 1304227 . T . . END=1304227 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,819 +chrX 1304228 . G . . END=1304242 GT:DP:GQ:MIN_DP:PL 0/0:44:88:44:0,88,1225 +chrX 1304243 . C . . END=1304243 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,1017 +chrX 1304244 . T . . END=1304330 GT:DP:GQ:MIN_DP:PL 0/0:40:39:39:0,39,1031 +chrX 1304331 . T C, 70.64 . AS_QUALapprox=|78|0;AS_VarDP=30|4|0;BaseQRankSum=1.106;DP=37;MQRankSum=0.456;QUALapprox=78;RAW_GT_COUNT=0,1,0;RAW_MQandDP=130561,37;ReadPosRankSum=-2.514;VarDP=34 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:30,4,0:34:78:0|1:1304331_T_C:78,0,1248,168,1260,1428:1304331:7,23,4,0 +chrX 1304332 . G . . END=1304339 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,102,1091 +chrX 1304340 . C A, 154.64 . AS_QUALapprox=|162|0;AS_VarDP=30|6|0;BaseQRankSum=1.216;DP=39;MQRankSum=0.522;QUALapprox=162;RAW_GT_COUNT=0,1,0;RAW_MQandDP=137761,39;ReadPosRankSum=-2.570;VarDP=36 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:30,6,0:36:99:0|1:1304331_T_C:162,0,1242,252,1260,1512:1304331:7,23,6,0 +chrX 1304341 . A G, 154.64 . AS_QUALapprox=|162|0;AS_VarDP=30|6|0;BaseQRankSum=0.842;DP=39;MQRankSum=0.522;QUALapprox=162;RAW_GT_COUNT=0,1,0;RAW_MQandDP=137761,39;ReadPosRankSum=-2.421;VarDP=36 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:30,6,0:36:99:0|1:1304331_T_C:162,0,1242,252,1260,1512:1304331:7,23,6,0 +chrX 1304342 . G . . END=1304352 GT:DP:GQ:MIN_DP:PL 0/0:35:88:35:0,88,1123 +chrX 1304353 . TTGCAC T, 229.60 . AS_QUALapprox=|237|0;AS_VarDP=33|8|0;BaseQRankSum=-0.283;DP=44;MQRankSum=0.554;QUALapprox=237;RAW_GT_COUNT=0,1,0;RAW_MQandDP=155761,44;ReadPosRankSum=-0.961;VarDP=41 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:33,8,0:41:99:0|1:1304353_TTGCAC_T:237,0,1362,336,1386,1722:1304353:8,25,8,0 +chrX 1304359 . C . . END=1304360 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,99,1336 +chrX 1304361 . C CGCCGT, 310.60 . AS_QUALapprox=|318|0;AS_VarDP=34|10|0;BaseQRankSum=0.911;DP=50;MQRankSum=0.597;QUALapprox=318;RAW_GT_COUNT=0,1,0;RAW_MQandDP=177361,50;ReadPosRankSum=-1.122;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:34,10,0:44:99:0|1:1304353_TTGCAC_T:318,0,1387,420,1417,1837:1304353:9,25,10,0 +chrX 1304362 . T . . END=1304651 GT:DP:GQ:MIN_DP:PL 0/0:55:88:55:0,88,1275 +chrX 1304652 . TTG T, 1038.60 . AS_QUALapprox=|1046|0;AS_VarDP=21|27|0;BaseQRankSum=0.738;DP=50;MQRankSum=0.000;QUALapprox=1046;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=-1.050;VarDP=48 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,27,0:48:99:0|1:1304652_TTG_T:1046,0,780,1109,861,1970:1304652:8,13,10,17 +chrX 1304655 . T . . END=1304665 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,117,1755 +chrX 1304666 . T G, 1061.64 . AS_QUALapprox=|1069|0;AS_VarDP=18|28|0;BaseQRankSum=-0.377;DP=48;MQRankSum=0.000;QUALapprox=1069;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=-2.060;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:18,28,0:46:99:0|1:1304652_TTG_T:1069,0,672,1124,756,1879:1304652:7,11,12,16 +chrX 1304667 . T . . END=1304916 GT:DP:GQ:MIN_DP:PL 0/0:49:47:49:0,47,1210 +chrX 1304917 . C G, 1227.06 . AS_QUALapprox=|1241|0;AS_VarDP=0|39|0;DP=40;QUALapprox=1241;RAW_GT_COUNT=0,0,1;RAW_MQandDP=141129,40;VarDP=39 GT:AD:DP:GQ:PL:SB 1/1:0,39,0:39:99:1241,116,0,1241,116,1241:0,0,16,23 +chrX 1304918 . G . . END=1305012 GT:DP:GQ:MIN_DP:PL 0/0:36:38:36:0,38,982 +chrX 1305013 . A . . END=1305013 GT:DP:GQ:MIN_DP:PL 0/0:34:14:34:0,14,935 +chrX 1305014 . G . . END=1305014 GT:DP:GQ:MIN_DP:PL 0/0:33:64:33:0,64,1007 +chrX 1305015 . A . . END=1305015 GT:DP:GQ:MIN_DP:PL 0/0:34:18:34:0,18,923 +chrX 1305016 . T . . END=1305025 GT:DP:GQ:MIN_DP:PL 0/0:35:27:35:0,27,949 +chrX 1305026 . C . . END=1305026 GT:DP:GQ:MIN_DP:PL 0/0:34:18:34:0,18,933 +chrX 1305027 . T . . END=1305123 GT:DP:GQ:MIN_DP:PL 0/0:50:24:45:0,24,1097 +chrX 1305124 . G C, 1667.06 . AS_QUALapprox=|1681|0;AS_VarDP=2|57|0;BaseQRankSum=2.173;DP=61;MQRankSum=1.939;QUALapprox=1681;RAW_GT_COUNT=0,0,1;RAW_MQandDP=210386,61;ReadPosRankSum=-2.054;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:2,57,0:59:99:1681,141,0,1687,170,1715:0,2,32,25 +chrX 1305125 . C . . END=1305213 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1305214 . A G, 2109.06 . AS_QUALapprox=|2123|0;AS_VarDP=0|69|0;DP=72;QUALapprox=2123;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255832,72;VarDP=69 GT:AD:DP:GQ:PL:SB 1/1:0,69,0:69:99:2123,206,0,2123,206,2123:0,0,38,31 +chrX 1305215 . A . . END=1305281 GT:DP:GQ:MIN_DP:PL 0/0:76:99:76:0,120,1800 +chrX 1305282 . C T, 962.64 . AS_QUALapprox=|970|0;AS_VarDP=40|40|0;BaseQRankSum=0.106;DP=83;MQRankSum=0.018;QUALapprox=970;RAW_GT_COUNT=0,1,0;RAW_MQandDP=294800,83;ReadPosRankSum=-0.876;VarDP=80 GT:AD:DP:GQ:PL:SB 0/1:40,40,0:80:99:970,0,955,1090,1075,2165:20,20,22,18 +chrX 1305283 . G . . END=1305941 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1305942 . T C, 887.64 . AS_QUALapprox=|895|0;AS_VarDP=26|36|0;BaseQRankSum=-2.167;DP=67;MQRankSum=-0.817;QUALapprox=895;RAW_GT_COUNT=0,1,0;RAW_MQandDP=239809,67;ReadPosRankSum=-0.414;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:26,36,0:62:99:895,0,659,972,766,1738:12,14,17,19 +chrX 1305943 . G . . END=1306170 GT:DP:GQ:MIN_DP:PL 0/0:55:57:55:0,57,1389 +chrX 1306171 . G C, 701.64 . AS_QUALapprox=|709|0;AS_VarDP=21|27|0;BaseQRankSum=0.215;DP=48;MQRankSum=0.000;QUALapprox=709;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=0.177;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:21,27,0:48:99:709,0,510,772,591,1363:11,10,13,14 +chrX 1306172 . A . . END=1306954 GT:DP:GQ:MIN_DP:PL 0/0:49:25:38:0,25,901 +chrX 1306955 . T G, 1558.06 . AS_QUALapprox=|1572|0;AS_VarDP=0|48|0;DP=49;QUALapprox=1572;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=48 GT:AD:DP:GQ:PL:SB 1/1:0,48,0:48:99:1572,144,0,1572,144,1572:0,0,19,29 +chrX 1306956 . A . . END=1307318 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,115,1541 +chrX 1307319 . T C, 2230.06 . AS_QUALapprox=|2244|0;AS_VarDP=0|67|0;DP=71;QUALapprox=2244;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;VarDP=67 GT:AD:DP:GQ:PL:SB 1/1:0,67,0:67:99:2244,201,0,2244,201,2244:0,0,42,25 +chrX 1307320 . T . . END=1307479 GT:DP:GQ:MIN_DP:PL 0/0:52:44:52:0,44,1231 +chrX 1307480 . T . . END=1307480 GT:DP:GQ:MIN_DP:PL 0/0:60:0:60:0,0,1509 +chrX 1307481 . T . . END=1307483 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1307484 . A . . END=1307484 GT:DP:GQ:MIN_DP:PL 0/0:59:0:59:0,0,1333 +chrX 1307485 . A . . END=1307492 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 1307493 . A . . END=1307493 GT:DP:GQ:MIN_DP:PL 0/0:62:0:62:0,0,1247 +chrX 1307494 . A . . END=1307497 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1307498 . G . . END=1307498 GT:DP:GQ:MIN_DP:PL 0/0:61:0:61:0,0,1184 +chrX 1307499 . G . . END=1307504 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 1307505 . T . . END=1307506 GT:DP:GQ:MIN_DP:PL 0/0:65:0:65:0,0,1135 +chrX 1307507 . T . . END=1307507 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1307508 . C . . END=1307508 GT:DP:GQ:MIN_DP:PL 0/0:69:0:69:0,0,1255 +chrX 1307509 . C . . END=1307509 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1307510 . C . . END=1307510 GT:DP:GQ:MIN_DP:PL 0/0:70:0:70:0,0,1190 +chrX 1307511 . C . . END=1307511 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,120,1800 +chrX 1307512 . G . . END=1307512 GT:DP:GQ:MIN_DP:PL 0/0:62:0:62:0,0,893 +chrX 1307513 . T . . END=1307516 GT:DP:GQ:MIN_DP:PL 0/0:76:99:76:0,120,1800 +chrX 1307517 . G . . END=1307517 GT:DP:GQ:MIN_DP:PL 0/0:75:0:75:0,0,1243 +chrX 1307518 . A . . END=1307522 GT:DP:GQ:MIN_DP:PL 0/0:78:99:78:0,120,1800 +chrX 1307523 . T . . END=1307523 GT:DP:GQ:MIN_DP:PL 0/0:77:0:77:0,0,1116 +chrX 1307524 . G . . END=1307585 GT:DP:GQ:MIN_DP:PL 0/0:89:99:89:0,120,1800 +chrX 1307586 . C . . END=1307586 GT:DP:GQ:MIN_DP:PL 0/0:94:0:94:0,0,158 +chrX 1307587 . T . . END=1307791 GT:DP:GQ:MIN_DP:PL 0/0:81:85:81:0,85,1190 +chrX 1307792 . T C, 2490.06 . AS_QUALapprox=|2504|0;AS_VarDP=0|56|0;DP=57;QUALapprox=2504;RAW_GT_COUNT=0,0,1;RAW_MQandDP=164446,57;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,56,0:56:99:0|1:1307792_T_C:2504,169,0,2504,169,2504:1307792:0,0,25,31 +chrX 1307793 . T C, 2490.06 . AS_QUALapprox=|2504|0;AS_VarDP=0|56|0;DP=57;QUALapprox=2504;RAW_GT_COUNT=0,0,1;RAW_MQandDP=164446,57;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,56,0:56:99:0|1:1307792_T_C:2504,169,0,2504,169,2504:1307792:0,0,25,31 +chrX 1307794 . T . . END=1307796 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 1307797 . A G, 2461.06 . AS_QUALapprox=|2475|0;AS_VarDP=0|55|0;DP=55;QUALapprox=2475;RAW_GT_COUNT=0,0,1;RAW_MQandDP=157246,55;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,55,0:55:99:0|1:1307792_T_C:2475,166,0,2475,166,2475:1307792:0,0,25,30 +chrX 1307798 . G . . END=1307803 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 1307804 . T C, 2596.06 . AS_QUALapprox=|2610|0;AS_VarDP=0|58|0;DP=58;QUALapprox=2610;RAW_GT_COUNT=0,0,1;RAW_MQandDP=168046,58;VarDP=58 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,58,0:58:99:0|1:1307792_T_C:2610,175,0,2610,175,2610:1307792:0,0,26,32 +chrX 1307805 . G . . END=1307818 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1307819 . G A, 2551.06 . AS_QUALapprox=|2565|0;AS_VarDP=0|57|0;DP=57;QUALapprox=2565;RAW_GT_COUNT=0,0,1;RAW_MQandDP=163900,57;VarDP=57 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,57,0:57:99:0|1:1307792_T_C:2565,172,0,2565,172,2565:1307792:0,0,29,28 +chrX 1307820 . G . . END=1307822 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1307823 . T C, 2506.06 . AS_QUALapprox=|2520|0;AS_VarDP=0|56|0;DP=56;QUALapprox=2520;RAW_GT_COUNT=0,0,1;RAW_MQandDP=160300,56;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,56,0:56:99:0|1:1307792_T_C:2520,169,0,2520,169,2520:1307792:0,0,29,27 +chrX 1307824 . AC A, 2506.03 . AS_QUALapprox=|2520|0;AS_VarDP=0|56|0;DP=56;QUALapprox=2520;RAW_GT_COUNT=0,0,1;RAW_MQandDP=160300,56;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,56,0:56:99:0|1:1307792_T_C:2520,169,0,2520,169,2520:1307792:0,0,29,27 +chrX 1307826 . C . . END=1307828 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1307829 . TC T, 2681.03 . AS_QUALapprox=|2695|0;AS_VarDP=0|60|0;DP=60;QUALapprox=2695;RAW_GT_COUNT=0,0,1;RAW_MQandDP=174125,60;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,60,0:60:99:0|1:1307792_T_C:2695,181,0,2695,181,2695:1307792:0,0,30,30 +chrX 1307831 . T . . END=1307833 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 1307834 . C CTT, 2677.03 . AS_QUALapprox=|2691|0;AS_VarDP=0|60|0;DP=62;QUALapprox=2691;RAW_GT_COUNT=0,0,1;RAW_MQandDP=181325,62;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,60,0:60:99:0|1:1307792_T_C:2691,181,0,2691,181,2691:1307792:0,0,29,31 +chrX 1307835 . T . . END=1307994 GT:DP:GQ:MIN_DP:PL 0/0:59:24:54:0,24,1207 +chrX 1307995 . C T, 1127.06 . AS_QUALapprox=|1141|0;AS_VarDP=1|36|0;BaseQRankSum=2.412;DP=42;MQRankSum=0.000;QUALapprox=1141;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151200,42;ReadPosRankSum=-1.077;VarDP=37 GT:AD:DP:GQ:PL:SB 1/1:1,36,0:37:99:1141,100,0,1143,107,1150:0,1,16,20 +chrX 1307996 . C . . END=1308287 GT:DP:GQ:MIN_DP:PL 0/0:49:34:47:0,34,1186 +chrX 1308288 . G A, 1741.06 . AS_QUALapprox=|1755|0;AS_VarDP=1|53|0;BaseQRankSum=2.916;DP=56;MQRankSum=0.000;QUALapprox=1755;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;ReadPosRankSum=-0.417;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:1,53,0:54:99:1755,152,0,1757,159,1764:1,0,28,25 +chrX 1308289 . A . . END=1308964 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,116,1578 +chrX 1308965 . T C, 1921.06 . AS_QUALapprox=|1935|0;AS_VarDP=0|61|0;DP=63;QUALapprox=1935;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223749,63;VarDP=61 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:1935,183,0,1935,183,1935:0,0,36,25 +chrX 1308966 . G . . END=1309182 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 1309183 . C T, 1967.06 . AS_QUALapprox=|1981|0;AS_VarDP=0|59|0;DP=59;QUALapprox=1981;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1981,177,0,1981,177,1981:0,0,32,27 +chrX 1309184 . G . . END=1312228 GT:DP:GQ:MIN_DP:PL 0/0:61:60:61:0,60,1170 +chrX 1312229 . A G, 517.64 . AS_QUALapprox=|525|0;AS_VarDP=24|21|0;BaseQRankSum=-0.291;DP=46;MQRankSum=0.000;QUALapprox=525;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=0.080;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:24,21,0:45:99:525,0,645,597,707,1304:9,15,9,12 +chrX 1312230 . C . . END=1312427 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,104,1454 +chrX 1312428 . G C, 664.64 . AS_QUALapprox=|672|0;AS_VarDP=27|25|0;BaseQRankSum=-0.433;DP=52;MQRankSum=0.000;QUALapprox=672;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=-0.394;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:27,25,0:52:99:672,0,736,753,811,1564:12,15,15,10 +chrX 1312429 . G . . END=1312642 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,117,1488 +chrX 1312643 . A G, 525.64 . AS_QUALapprox=|533|0;AS_VarDP=27|20|0;BaseQRankSum=0.502;DP=50;MQRankSum=0.000;QUALapprox=533;RAW_GT_COUNT=0,1,0;RAW_MQandDP=178000,50;ReadPosRankSum=-0.657;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:27,20,0:47:99:533,0,757,615,817,1432:12,15,12,8 +chrX 1312644 . T . . END=1312965 GT:DP:GQ:MIN_DP:PL 0/0:51:94:51:0,94,1329 +chrX 1312966 . T C, 905.64 . AS_QUALapprox=|913|0;AS_VarDP=29|34|0;BaseQRankSum=-0.182;DP=63;MQRankSum=0.000;QUALapprox=913;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=0.103;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:29,34,0:63:99:913,0,779,1000,881,1880:17,12,15,19 +chrX 1312967 . G . . END=1313273 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,112,1800 +chrX 1313274 . A T, 762.64 . AS_QUALapprox=|770|0;AS_VarDP=31|31|0;BaseQRankSum=-0.477;DP=64;MQRankSum=0.644;QUALapprox=770;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226925,64;ReadPosRankSum=-1.091;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:31,31,0:62:99:770,0,829,863,921,1784:19,12,18,13 +chrX 1313275 . A . . END=1313554 GT:DP:GQ:MIN_DP:PL 0/0:73:67:73:0,67,1800 +chrX 1313555 . CA C, 633.60 . AS_QUALapprox=|641|0;AS_VarDP=26|28|0;BaseQRankSum=0.113;DP=61;MQRankSum=0.000;QUALapprox=641;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-0.864;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:26,28,0:54:99:641,0,577,719,661,1380:10,16,9,19 +chrX 1313557 . A . . END=1313708 GT:DP:GQ:MIN_DP:PL 0/0:45:27:42:0,27,1021 +chrX 1313709 . C T, 458.64 . AS_QUALapprox=|466|0;AS_VarDP=24|21|0;BaseQRankSum=-1.108;DP=45;MQRankSum=-0.684;QUALapprox=466;RAW_GT_COUNT=0,1,0;RAW_MQandDP=156814,45;ReadPosRankSum=0.455;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:24,21,0:45:99:466,0,622,538,685,1223:10,14,7,14 +chrX 1313710 . C . . END=1313846 GT:DP:GQ:MIN_DP:PL 0/0:48:91:48:0,91,1356 +chrX 1313847 . G A, 562.64 . AS_QUALapprox=|570|0;AS_VarDP=19|21|0;BaseQRankSum=0.562;DP=45;MQRankSum=0.000;QUALapprox=570;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=-0.854;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:19,21,0:40:99:570,0,488,627,551,1178:5,14,12,9 +chrX 1313848 . G . . END=1313999 GT:DP:GQ:MIN_DP:PL 0/0:58:92:58:0,92,1320 +chrX 1314000 . G A, 798.64 . AS_QUALapprox=|806|0;AS_VarDP=28|30|0;BaseQRankSum=0.827;DP=61;MQRankSum=0.000;QUALapprox=806;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=0.350;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:28,30,0:58:99:806,0,704,889,794,1684:14,14,16,14 +chrX 1314001 . A . . END=1314218 GT:DP:GQ:MIN_DP:PL 0/0:47:28:44:0,28,1261 +chrX 1314219 . C . . END=1314219 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,1152 +chrX 1314220 . A . . END=1314223 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,120,1800 +chrX 1314224 . C . . END=1314224 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,1127 +chrX 1314225 . C . . END=1314242 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,108,1360 +chrX 1314243 . C . . END=1314243 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,890 +chrX 1314244 . C . . END=1314250 GT:DP:GQ:MIN_DP:PL 0/0:43:81:43:0,81,1215 +chrX 1314251 . C . . END=1314258 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,674 +chrX 1314259 . ACC A, 727.60 . AS_QUALapprox=|735|0;AS_VarDP=16|20|0;BaseQRankSum=0.427;DP=38;MQRankSum=-2.518;QUALapprox=735;RAW_GT_COUNT=0,1,0;RAW_MQandDP=119107,38;ReadPosRankSum=-1.099;VarDP=36 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:16,20,0:36:99:0|1:1314259_ACC_A:735,0,572,783,632,1415:1314259:6,10,11,9 +chrX 1314262 . C . . END=1314263 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1087 +chrX 1314264 . ACTGCGCCTGCCCAACCC A, 711.60 . AS_QUALapprox=|719|0;AS_VarDP=21|20|0;BaseQRankSum=0.209;DP=41;MQRankSum=-2.993;QUALapprox=719;RAW_GT_COUNT=0,1,0;RAW_MQandDP=129907,41;ReadPosRankSum=-1.135;VarDP=41 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,20,0:41:99:0|1:1314259_ACC_A:719,0,782,782,842,1624:1314259:9,12,11,9 +chrX 1314282 . C . . END=1314284 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,99,1485 +chrX 1314285 . T A, 710.64 . AS_QUALapprox=|718|0;AS_VarDP=19|19|0;BaseQRankSum=-0.076;DP=38;MQRankSum=-2.916;QUALapprox=718;RAW_GT_COUNT=0,1,0;RAW_MQandDP=119107,38;ReadPosRankSum=2.206;VarDP=38 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:19,19,0:38:99:0|1:1314259_ACC_A:718,0,714,775,772,1546:1314259:6,13,10,9 +chrX 1314286 . G . . END=1314332 GT:DP:GQ:MIN_DP:PL 0/0:36:48:36:0,48,720 +chrX 1314333 . C T, 175.64 . AS_QUALapprox=|183|0;AS_VarDP=23|6|0;BaseQRankSum=0.140;DP=29;MQRankSum=-2.648;QUALapprox=183;RAW_GT_COUNT=0,1,0;RAW_MQandDP=96639,29;ReadPosRankSum=-2.364;VarDP=29 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,6,0:29:99:0|1:1314259_ACC_A:183,0,929,252,947,1199:1314259:11,12,4,2 +chrX 1314334 . A . . END=1314337 GT:DP:GQ:MIN_DP:PL 0/0:26:28:25:0,28,684 +chrX 1314338 . C G, 88.64 . AS_QUALapprox=|96|0;AS_VarDP=24|4|0;BaseQRankSum=0.123;DP=28;MQRankSum=-1.323;QUALapprox=96;RAW_GT_COUNT=0,1,0;RAW_MQandDP=94813,28;ReadPosRankSum=-2.152;VarDP=28 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,4,0:28:96:0|1:1314259_ACC_A:96,0,977,168,989,1157:1314259:11,13,2,2 +chrX 1314339 . C . . END=1314344 GT:DP:GQ:MIN_DP:PL 0/0:26:69:26:0,69,1035 +chrX 1314345 . G A, 40.64 . AS_QUALapprox=|48|0;AS_VarDP=26|3|0;BaseQRankSum=-0.557;DP=29;MQRankSum=-1.711;QUALapprox=48;RAW_GT_COUNT=0,1,0;RAW_MQandDP=98413,29;ReadPosRankSum=-1.251;VarDP=29 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,3,0:29:48:0|1:1314259_ACC_A:48,0,1064,126,1073,1199:1314259:13,13,2,1 +chrX 1314346 . C . . END=1314441 GT:DP:GQ:MIN_DP:PL 0/0:32:20:27:0,20,768 +chrX 1314442 . T C, 0.21 . AS_QUALapprox=|5|0;AS_VarDP=26|3|0;BaseQRankSum=0.619;DP=32;MQRankSum=-4.903;QUALapprox=5;RAW_GT_COUNT=0,1,0;RAW_MQandDP=112365,32;ReadPosRankSum=0.964;VarDP=29 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,3,0:29:5:0|1:1314442_T_C:5,0,1074,57,1082,1136:1314442:14,12,0,1 +chrX 1314443 . T . . END=1314443 GT:DP:GQ:MIN_DP:PL 0/0:29:18:29:0,18,829 +chrX 1314444 . G GCCCAAC, 0.35 . AS_QUALapprox=|6|0;AS_VarDP=26|3|0;BaseQRankSum=0.424;DP=31;MQRankSum=-4.903;QUALapprox=6;RAW_GT_COUNT=0,1,0;RAW_MQandDP=108765,31;ReadPosRankSum=0.771;VarDP=29 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,3,0:29:6:0|1:1314442_T_C:6,0,1073,57,1082,1136:1314442:14,12,0,1 +chrX 1314445 . C . . END=1314446 GT:DP:GQ:MIN_DP:PL 0/0:29:15:29:0,15,834 +chrX 1314447 . C . . END=1314448 GT:DP:GQ:MIN_DP:PL 0/0:30:20:30:0,20,853 +chrX 1314449 . A . . END=1314450 GT:DP:GQ:MIN_DP:PL 0/0:31:0:29:0,0,790 +chrX 1314451 . T *,TACCCAACCCCACTGTGCCTGCTCAACC, 0.04 . AS_QUALapprox=|0|3|0;AS_VarDP=0|0|0|0;BaseQRankSum=0.856;DP=32;MQRankSum=-3.603;QUALapprox=3;RAW_GT_COUNT=0,1,0;RAW_MQandDP=111366,32;ReadPosRankSum=0.248;VarDP=28 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|2:27,0,1,0:28:3:0|1:1314442_T_C:3,22,1156,0,1126,1125,57,1159,1133,1188:1314442:16,11,0,1 +chrX 1314452 . G . . END=1314481 GT:DP:GQ:MIN_DP:PL 0/0:27:48:25:0,48,720 +chrX 1314482 . A G,ACCCAACCCCACTGTGCCTGCTCAACCGCACTGCACCTGCCCAATCCCACTGCACCTG, 558.60 . AS_QUALapprox=|278|566|0;AS_VarDP=6|0|7|0;BaseQRankSum=-0.615;DP=31;MQRankSum=-0.615;QUALapprox=566;RAW_GT_COUNT=0,1,0;RAW_MQandDP=99574,31;ReadPosRankSum=0.069;VarDP=13 GT:AD:DP:GQ:PL:SB 0/2:6,0,7,0:13:99:566,288,780,0,203,150,461,670,227,786:6,0,5,2 +chrX 1314483 . C . . END=1314502 GT:DP:GQ:MIN_DP:PL 0/0:51:50:51:0,50,1234 +chrX 1314503 . C . . END=1314503 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,411 +chrX 1314504 . C . . END=1314507 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 1314508 . C . . END=1314508 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,164 +chrX 1314509 . G . . END=1314544 GT:DP:GQ:MIN_DP:PL 0/0:40:69:40:0,69,1037 +chrX 1314545 . T . . END=1314545 GT:DP:GQ:MIN_DP:PL 0/0:29:0:29:0,0,0 +chrX 1314546 . C . . END=1314546 GT:DP:GQ:MIN_DP:PL 0/0:29:72:29:0,72,1080 +chrX 1314547 . C . . END=1314547 GT:DP:GQ:MIN_DP:PL 0/0:29:0:29:0,0,153 +chrX 1314548 . C . . END=1314552 GT:DP:GQ:MIN_DP:PL 0/0:28:62:28:0,62,889 +chrX 1314553 . C . . END=1314554 GT:DP:GQ:MIN_DP:PL 0/0:24:0:24:0,0,318 +chrX 1314555 . C . . END=1314563 GT:DP:GQ:MIN_DP:PL 0/0:23:30:22:0,30,630 +chrX 1314564 . T . . END=1314564 GT:DP:GQ:MIN_DP:PL 0/0:20:0:20:0,0,0 +chrX 1314565 . C . . END=1314565 GT:DP:GQ:MIN_DP:PL 0/0:18:39:18:0,39,585 +chrX 1314566 . C . . END=1314566 GT:DP:GQ:MIN_DP:PL 0/0:13:0:13:0,0,0 +chrX 1314567 . C . . END=1314575 GT:DP:GQ:MIN_DP:PL 0/0:15:20:15:0,20,442 +chrX 1314576 . T . . END=1314580 GT:DP:GQ:MIN_DP:PL 0/0:15:0:15:0,0,242 +chrX 1314581 . A . . END=1314582 GT:DP:GQ:MIN_DP:PL 0/0:11:24:11:0,24,360 +chrX 1314583 . C . . END=1314585 GT:DP:GQ:MIN_DP:PL 0/0:12:0:12:0,0,0 +chrX 1314586 . C . . END=1314587 GT:DP:GQ:MIN_DP:PL 0/0:11:24:11:0,24,360 +chrX 1314588 . C . . END=1314588 GT:DP:GQ:MIN_DP:PL 0/0:10:0:10:0,0,248 +chrX 1314589 . T . . END=1314589 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,315 +chrX 1314590 . G . . END=1314746 GT:DP:GQ:MIN_DP:PL 0/0:0:0:0:0,0,0 +chrX 1314747 . T . . END=1314747 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,233 +chrX 1314748 . G . . END=1314748 GT:DP:GQ:MIN_DP:PL 0/0:5:15:5:0,15,153 +chrX 1314749 . C . . END=1314752 GT:DP:GQ:MIN_DP:PL 0/0:8:24:8:0,24,248 +chrX 1314753 . A . . END=1314756 GT:DP:GQ:MIN_DP:PL 0/0:9:0:9:0,0,0 +chrX 1314757 . C . . END=1314762 GT:DP:GQ:MIN_DP:PL 0/0:10:27:9:0,27,262 +chrX 1314763 . A . . END=1314763 GT:DP:GQ:MIN_DP:PL 0/0:9:0:9:0,0,203 +chrX 1314764 . C . . END=1314772 GT:DP:GQ:MIN_DP:PL 0/0:12:33:11:0,33,311 +chrX 1314773 . T . . END=1314773 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,0 +chrX 1314774 . C . . END=1314774 GT:DP:GQ:MIN_DP:PL 0/0:14:42:14:0,42,396 +chrX 1314775 . C . . END=1314775 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,143 +chrX 1314776 . C . . END=1314791 GT:DP:GQ:MIN_DP:PL 0/0:19:22:17:0,22,471 +chrX 1314792 . T . . END=1314792 GT:DP:GQ:MIN_DP:PL 0/0:20:0:20:0,0,109 +chrX 1314793 . C . . END=1314844 GT:DP:GQ:MIN_DP:PL 0/0:28:29:26:0,29,703 +chrX 1314845 . C . . END=1314845 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,819 +chrX 1314846 . C . . END=1314848 GT:DP:GQ:MIN_DP:PL 0/0:30:76:30:0,76,913 +chrX 1314849 . T . . END=1314849 GT:DP:GQ:MIN_DP:PL 0/0:26:0:26:0,0,287 +chrX 1314850 . C . . END=1314855 GT:DP:GQ:MIN_DP:PL 0/0:29:72:29:0,72,1080 +chrX 1314856 . G . . END=1314856 GT:DP:GQ:MIN_DP:PL 0/0:28:14:28:0,14,763 +chrX 1314857 . C . . END=1314869 GT:DP:GQ:MIN_DP:PL 0/0:25:34:23:0,34,700 +chrX 1314870 . G C, 22.64 . AS_QUALapprox=|30|0;AS_VarDP=3|5|0;BaseQRankSum=0.272;DP=8;MQRankSum=-1.292;QUALapprox=30;RAW_GT_COUNT=0,1,0;RAW_MQandDP=13554,8;ReadPosRankSum=0.414;VarDP=8 GT:AD:DP:GQ:PL:SB 0/1:3,5,0:8:30:30,0,46,38,54,92:3,0,3,2 +chrX 1314871 . C . . END=1314875 GT:DP:GQ:MIN_DP:PL 0/0:24:60:24:0,60,900 +chrX 1314876 . C . . END=1314877 GT:DP:GQ:MIN_DP:PL 0/0:21:0:21:0,0,0 +chrX 1314878 . C . . END=1314888 GT:DP:GQ:MIN_DP:PL 0/0:23:47:23:0,47,724 +chrX 1314889 . A . . END=1314889 GT:DP:GQ:MIN_DP:PL 0/0:22:0:22:0,0,0 +chrX 1314890 . C . . END=1314894 GT:DP:GQ:MIN_DP:PL 0/0:22:54:22:0,54,810 +chrX 1314895 . A . . END=1314895 GT:DP:GQ:MIN_DP:PL 0/0:22:0:22:0,0,0 +chrX 1314896 . A . . END=1314926 GT:DP:GQ:MIN_DP:PL 0/0:21:38:21:0,38,605 +chrX 1314927 . G . . END=1314927 GT:DP:GQ:MIN_DP:PL 0/0:25:5:25:0,5,629 +chrX 1314928 . C . . END=1314929 GT:DP:GQ:MIN_DP:PL 0/0:25:72:25:0,72,1080 +chrX 1314930 . C . . END=1314930 GT:DP:GQ:MIN_DP:PL 0/0:25:6:25:0,6,690 +chrX 1314931 . T . . END=1314935 GT:DP:GQ:MIN_DP:PL 0/0:27:72:27:0,72,1080 +chrX 1314936 . T . . END=1314936 GT:DP:GQ:MIN_DP:PL 0/0:29:0:29:0,0,600 +chrX 1314937 . T . . END=1314937 GT:DP:GQ:MIN_DP:PL 0/0:29:78:29:0,78,1170 +chrX 1314938 . G . . END=1314938 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,686 +chrX 1314939 . C . . END=1314947 GT:DP:GQ:MIN_DP:PL 0/0:29:65:29:0,65,953 +chrX 1314948 . T . . END=1314948 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,575 +chrX 1314949 . C . . END=1314963 GT:DP:GQ:MIN_DP:PL 0/0:31:48:31:0,48,880 +chrX 1314964 . C . . END=1314965 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,516 +chrX 1314966 . C . . END=1314970 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,105,1157 +chrX 1314971 . T . . END=1314972 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,373 +chrX 1314973 . C . . END=1314981 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,104,1295 +chrX 1314982 . T . . END=1314982 GT:DP:GQ:MIN_DP:PL 0/0:37:12:37:0,12,968 +chrX 1314983 . C . . END=1314983 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,120,1800 +chrX 1314984 . G . . END=1314984 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,115 +chrX 1314985 . C . . END=1315002 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 1315003 . C . . END=1315003 GT:DP:GQ:MIN_DP:PL 0/0:60:0:60:0,0,179 +chrX 1315004 . C . . END=1315021 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 1315022 . A . . END=1315022 GT:DP:GQ:MIN_DP:PL 0/0:62:0:62:0,0,0 +chrX 1315023 . C . . END=1315209 GT:DP:GQ:MIN_DP:PL 0/0:80:99:80:0,120,1800 +chrX 1315210 . A C, 984.64 . AS_QUALapprox=|992|0;AS_VarDP=26|34|0;BaseQRankSum=0.850;DP=64;MQRankSum=0.000;QUALapprox=992;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=-0.500;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:26,34,0:60:99:992,0,703,1070,806,1875:14,12,11,23 +chrX 1315211 . C . . END=1315545 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 1315546 . C G, 899.64 . AS_QUALapprox=|907|0;AS_VarDP=36|34|0;BaseQRankSum=0.886;DP=71;MQRankSum=0.000;QUALapprox=907;RAW_GT_COUNT=0,1,0;RAW_MQandDP=255600,71;ReadPosRankSum=1.034;VarDP=70 GT:AD:DP:GQ:PL:SB 0/1:36,34,0:70:99:907,0,916,1013,1018,2031:18,18,14,20 +chrX 1315547 . G . . END=1315584 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 1315585 . T G, 901.64 . AS_QUALapprox=|909|0;AS_VarDP=29|33|0;BaseQRankSum=0.179;DP=63;MQRankSum=0.000;QUALapprox=909;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=0.233;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:29,33,0:62:99:909,0,773,995,872,1867:15,14,14,19 +chrX 1315586 . G . . END=1315769 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 1315770 . AATAGATAGATAGATAG A, 947.60 . AS_QUALapprox=|955|0;AS_VarDP=27|25|0;BaseQRankSum=-1.324;DP=74;MQRankSum=0.000;QUALapprox=955;RAW_GT_COUNT=0,1,0;RAW_MQandDP=266400,74;ReadPosRankSum=0.815;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,25,0:52:99:0|1:1315770_AATAGATAGATAGATAG_A:955,0,1044,1037,1119,2156:1315770:11,16,14,11 +chrX 1315787 . A . . END=1315799 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 1315800 . TAGATAGATAGA T, 1208.60 . AS_QUALapprox=|1216|0;AS_VarDP=35|32|0;BaseQRankSum=-0.069;DP=69;MQRankSum=0.000;QUALapprox=1216;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=-1.733;VarDP=67 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:35,32,0:67:99:1|0:1315770_AATAGATAGATAGATAG_A:1216,0,1329,1321,1425,2747:1315770:18,17,13,19 +chrX 1315812 . T . . END=1315820 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 1315821 . TAGATAGATG T, 1172.60 . AS_QUALapprox=|1180|0;AS_VarDP=38|31|0;BaseQRankSum=2.238;DP=69;MQRankSum=0.000;QUALapprox=1180;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=-1.349;VarDP=69 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:38,31,0:69:99:1|0:1315770_AATAGATAGATAGATAG_A:1180,0,1476,1294,1569,2863:1315770:21,17,14,17 +chrX 1315831 . A . . END=1315855 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1315856 . A G, 938.64 . AS_QUALapprox=|946|0;AS_VarDP=37|26|0;BaseQRankSum=-0.433;DP=66;MQRankSum=0.000;QUALapprox=946;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=1.042;VarDP=63 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:37,26,0:63:99:1|0:1315770_AATAGATAGATAGATAG_A:946,0,1398,1057,1476,2533:1315770:18,19,13,13 +chrX 1315857 . T . . END=1315952 GT:DP:GQ:MIN_DP:PL 0/0:60:68:60:0,68,1038 +chrX 1315953 . TGATA T, 507.60 . AS_QUALapprox=|515|0;AS_VarDP=23|14|0;BaseQRankSum=0.474;DP=42;MQRankSum=0.000;QUALapprox=515;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151200,42;ReadPosRankSum=-0.812;VarDP=37 GT:AD:DP:GQ:PL:SB 0/1:23,14,0:37:99:515,0,821,583,863,1446:12,11,5,9 +chrX 1315958 . G . . END=1316000 GT:DP:GQ:MIN_DP:PL 0/0:32:69:32:0,69,888 +chrX 1316001 . CAGAT C, 445.60 . AS_QUALapprox=|453|0;AS_VarDP=17|12|0;BaseQRankSum=1.255;DP=32;MQRankSum=0.000;QUALapprox=453;RAW_GT_COUNT=0,1,0;RAW_MQandDP=115200,32;ReadPosRankSum=1.773;VarDP=29 GT:AD:DP:GQ:PL:SB 0/1:17,12,0:29:99:453,0,652,504,688,1192:8,9,4,8 +chrX 1316006 . A . . END=1316030 GT:DP:GQ:MIN_DP:PL 0/0:33:62:33:0,62,919 +chrX 1316031 . G GATAC, 647.60 . AS_QUALapprox=|655|0;AS_VarDP=16|17|0;BaseQRankSum=0.027;DP=35;MQRankSum=0.000;QUALapprox=655;RAW_GT_COUNT=0,1,0;RAW_MQandDP=126000,35;ReadPosRankSum=0.018;VarDP=33 GT:AD:DP:GQ:PL:SB 0/1:16,17,0:33:99:655,0,610,703,662,1365:6,10,8,9 +chrX 1316032 . A . . END=1316058 GT:DP:GQ:MIN_DP:PL 0/0:36:75:36:0,75,997 +chrX 1316059 . A AATAGATAGATAGATAGATAG, 836.60 . AS_QUALapprox=|844|0;AS_VarDP=18|22|0;BaseQRankSum=-0.385;DP=42;MQRankSum=0.000;QUALapprox=844;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151200,42;ReadPosRankSum=-1.292;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:18,22,0:40:99:844,0,670,898,736,1634:6,12,10,12 +chrX 1316060 . A . . END=1316079 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,116,1652 +chrX 1316080 . A . . END=1316080 GT:DP:GQ:MIN_DP:PL 0/0:58:0:58:0,0,1380 +chrX 1316081 . A . . END=1316198 GT:DP:GQ:MIN_DP:PL 0/0:56:29:48:0,29,1271 +chrX 1316199 . A G, 768.64 . AS_QUALapprox=|776|0;AS_VarDP=23|22|0;BaseQRankSum=-0.844;DP=45;MQRankSum=0.000;QUALapprox=776;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=-0.729;VarDP=45 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,22,0:45:99:0|1:1316199_A_G:776,0,868,845,934,1779:1316199:11,12,7,15 +chrX 1316200 . G . . END=1316221 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,114,1459 +chrX 1316222 . TAGATAGATGATAGATGAC T, 741.60 . AS_QUALapprox=|749|0;AS_VarDP=29|23|0;BaseQRankSum=1.813;DP=52;MQRankSum=-1.084;QUALapprox=749;RAW_GT_COUNT=0,1,0;RAW_MQandDP=185200,52;ReadPosRankSum=-1.217;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,23,0:52:99:0|1:1316199_A_G:749,0,1153,836,1218,2054:1316199:12,17,6,17 +chrX 1316241 . A . . END=1316264 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,114,1710 +chrX 1316265 . GATA G, 689.60 . AS_QUALapprox=|697|0;AS_VarDP=31|21|0;BaseQRankSum=1.850;DP=54;MQRankSum=-0.280;QUALapprox=697;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190481,54;ReadPosRankSum=0.133;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:31,21,0:52:99:0|1:1316199_A_G:697,0,1242,791,1302,2093:1316199:13,18,7,14 +chrX 1316269 . GATAGA G,GTAGA, 643.60 . AS_QUALapprox=|114|651|0;AS_VarDP=31|0|13|0;BaseQRankSum=1.580;DP=50;MQRankSum=0.697;QUALapprox=651;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176081,50;ReadPosRankSum=0.397;VarDP=44 GT:AD:DP:GQ:PL:SB 0/2:31,0,13,0:44:99:651,537,1851,0,1268,1227,651,1844,1284,1938:13,18,6,7 +chrX 1316275 . T . . END=1316302 GT:DP:GQ:MIN_DP:PL 0/0:49:98:49:0,98,1414 +chrX 1316303 . T C,TAGAC,TAGATAGAC, 619.64 . AS_QUALapprox=|627|96|83|0;AS_VarDP=26|13|0|0|0;BaseQRankSum=1.612;DP=54;MQRankSum=0.761;QUALapprox=627;RAW_GT_COUNT=0,1,0;RAW_MQandDP=189090,54;ReadPosRankSum=2.250;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:26,13,0,0,0:39:99:627,0,1163,531,963,1601,544,1119,1592,1764,546,1151,1622,1767,1796:12,14,6,7 +chrX 1316304 . A . . END=1316608 GT:DP:GQ:MIN_DP:PL 0/0:48:95:48:0,95,1395 +chrX 1316609 . G A, 471.64 . AS_QUALapprox=|479|0;AS_VarDP=28|19|0;BaseQRankSum=0.107;DP=49;MQRankSum=0.000;QUALapprox=479;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=0.531;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:28,19,0:47:99:479,0,757,562,814,1377:13,15,12,7 +chrX 1316610 . G . . END=1316693 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 1316694 . T C, 699.64 . AS_QUALapprox=|707|0;AS_VarDP=31|28|0;BaseQRankSum=-0.249;DP=59;MQRankSum=0.000;QUALapprox=707;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=1.496;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:31,28,0:59:99:707,0,826,799,910,1709:18,13,15,13 +chrX 1316695 . T . . END=1316734 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 1316735 . C T, 692.64 . AS_QUALapprox=|700|0;AS_VarDP=31|27|0;BaseQRankSum=-0.911;DP=61;MQRankSum=0.000;QUALapprox=700;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=0.530;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:31,27,0:58:99:700,0,858,793,939,1732:19,12,14,13 +chrX 1316736 . G . . END=1316969 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 1316970 . G A, 831.64 . AS_QUALapprox=|839|0;AS_VarDP=32|31|0;BaseQRankSum=1.191;DP=66;MQRankSum=-0.737;QUALapprox=839;RAW_GT_COUNT=0,1,0;RAW_MQandDP=229264,66;ReadPosRankSum=1.382;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:32,31,0:63:99:839,0,818,934,911,1846:17,15,18,13 +chrX 1316971 . G . . END=1317245 GT:DP:GQ:MIN_DP:PL 0/0:40:41:36:0,41,987 +chrX 1317246 . C CT,CTTT, 605.02 . AS_QUALapprox=|290|534|0;AS_VarDP=0|5|16|0;DP=46;QUALapprox=622;RAW_GT_COUNT=0,0,1;RAW_MQandDP=150170,46;VarDP=21 GT:AD:DP:GQ:PL:SB 1/2:0,5,16,0:21:88:622,392,332,104,0,88,569,380,124,552:0,0,8,13 +chrX 1317247 . T . . END=1317341 GT:DP:GQ:MIN_DP:PL 0/0:34:40:34:0,40,630 +chrX 1317342 . C T, 449.64 . AS_QUALapprox=|457|0;AS_VarDP=17|16|0;BaseQRankSum=2.067;DP=35;MQRankSum=-0.970;QUALapprox=457;RAW_GT_COUNT=0,1,0;RAW_MQandDP=125425,35;ReadPosRankSum=0.090;VarDP=33 GT:AD:DP:GQ:PL:SB 0/1:17,16,0:33:99:457,0,437,508,485,993:9,8,7,9 +chrX 1317343 . C . . END=1317572 GT:DP:GQ:MIN_DP:PL 0/0:51:54:51:0,54,1266 +chrX 1317573 . A T, 687.64 . AS_QUALapprox=|695|0;AS_VarDP=26|27|0;BaseQRankSum=0.555;DP=54;MQRankSum=-1.374;QUALapprox=695;RAW_GT_COUNT=0,1,0;RAW_MQandDP=189529,54;ReadPosRankSum=-0.979;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:26,27,0:53:99:695,0,623,772,704,1475:14,12,8,19 +chrX 1317574 . T . . END=1318006 GT:DP:GQ:MIN_DP:PL 0/0:56:30:33:0,30,943 +chrX 1318007 . G . . END=1318007 GT:DP:GQ:MIN_DP:PL 0/0:33:15:33:0,15,899 +chrX 1318008 . A . . END=1318009 GT:DP:GQ:MIN_DP:PL 0/0:33:30:33:0,30,948 +chrX 1318010 . A . . END=1318010 GT:DP:GQ:MIN_DP:PL 0/0:34:18:34:0,18,933 +chrX 1318011 . C . . END=1318014 GT:DP:GQ:MIN_DP:PL 0/0:36:39:34:0,39,982 +chrX 1318015 . G . . END=1318015 GT:DP:GQ:MIN_DP:PL 0/0:32:12:32:0,12,884 +chrX 1318016 . T . . END=1318016 GT:DP:GQ:MIN_DP:PL 0/0:36:24:36:0,24,982 +chrX 1318017 . C . . END=1318017 GT:DP:GQ:MIN_DP:PL 0/0:35:7:35:0,7,960 +chrX 1318018 . T . . END=1318113 GT:DP:GQ:MIN_DP:PL 0/0:36:21:35:0,21,968 +chrX 1318114 . G . . END=1318154 GT:DP:GQ:MIN_DP:PL 0/0:60:0:60:0,0,1349 +chrX 1318155 . A AT, 463.60 . AS_QUALapprox=|471|0;AS_VarDP=22|23|0;BaseQRankSum=1.149;DP=60;MQRankSum=0.000;QUALapprox=471;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=-0.784;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:22,23,0:45:99:471,0,447,616,593,1629:8,14,7,16 +chrX 1318156 . T . . END=1318198 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,1067 +chrX 1318199 . A . . END=1318462 GT:DP:GQ:MIN_DP:PL 0/0:55:94:55:0,94,1253 +chrX 1318463 . G A, 585.64 . AS_QUALapprox=|593|0;AS_VarDP=25|22|0;BaseQRankSum=0.589;DP=52;MQRankSum=0.000;QUALapprox=593;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=0.800;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:25,22,0:47:99:593,0,677,669,743,1411:9,16,7,15 +chrX 1318464 . A . . END=1318915 GT:DP:GQ:MIN_DP:PL 0/0:46:72:46:0,72,1115 +chrX 1318916 . C CA, 350.60 . AS_QUALapprox=|358|0;AS_VarDP=22|18|0;BaseQRankSum=-0.795;DP=46;MQRankSum=0.000;QUALapprox=358;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=-1.360;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:22,18,0:40:99:358,0,465,424,519,943:10,12,6,12 +chrX 1318917 . A . . END=1318954 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,108,1390 +chrX 1318955 . G A, 448.64 . AS_QUALapprox=|456|0;AS_VarDP=28|17|0;BaseQRankSum=2.416;DP=45;MQRankSum=0.000;QUALapprox=456;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=2.412;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:28,17,0:45:99:456,0,763,540,814,1354:14,14,5,12 +chrX 1318956 . C . . END=1319152 GT:DP:GQ:MIN_DP:PL 0/0:46:88:46:0,88,1160 +chrX 1319153 . G A, 992.64 . AS_QUALapprox=|1000|0;AS_VarDP=30|27|0;BaseQRankSum=0.409;DP=62;MQRankSum=-0.090;QUALapprox=1000;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219481,62;ReadPosRankSum=0.482;VarDP=57 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:30,27,0:57:99:0|1:1319153_G_A:1000,0,1157,1090,1239,2329:1319153:17,13,19,8 +chrX 1319154 . C . . END=1319155 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1319156 . T C, 989.64 . AS_QUALapprox=|997|0;AS_VarDP=31|27|0;BaseQRankSum=-1.678;DP=61;MQRankSum=-0.124;QUALapprox=997;RAW_GT_COUNT=0,1,0;RAW_MQandDP=215881,61;ReadPosRankSum=0.850;VarDP=58 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:31,27,0:58:99:0|1:1319153_G_A:997,0,1199,1090,1280,2371:1319153:18,13,19,8 +chrX 1319157 . G . . END=1319327 GT:DP:GQ:MIN_DP:PL 0/0:58:70:58:0,70,1370 +chrX 1319328 . C T, 697.64 . AS_QUALapprox=|705|0;AS_VarDP=29|28|0;BaseQRankSum=0.642;DP=61;MQRankSum=0.000;QUALapprox=705;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=1.749;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:29,28,0:57:99:705,0,724,854,874,2020:17,12,17,11 +chrX 1319329 . C . . END=1319713 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,109,1524 +chrX 1319714 . GT G, 693.60 . AS_QUALapprox=|701|0;AS_VarDP=28|21|0;BaseQRankSum=1.528;DP=58;MQRankSum=0.907;QUALapprox=701;RAW_GT_COUNT=0,1,0;RAW_MQandDP=206800,58;ReadPosRankSum=0.073;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,21,0:49:99:0|1:1319714_GT_G:701,0,1019,785,1082,1867:1319714:15,13,10,11 +chrX 1319716 . T . . END=1319726 GT:DP:GQ:MIN_DP:PL 0/0:51:90:51:0,90,1350 +chrX 1319727 . T G, 690.64 . AS_QUALapprox=|698|0;AS_VarDP=29|21|0;BaseQRankSum=-1.316;DP=53;MQRankSum=0.891;QUALapprox=698;RAW_GT_COUNT=0,1,0;RAW_MQandDP=188800,53;ReadPosRankSum=0.118;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,21,0:50:99:0|1:1319714_GT_G:698,0,1049,785,1112,1897:1319714:16,13,10,11 +chrX 1319728 . T . . END=1320498 GT:DP:GQ:MIN_DP:PL 0/0:56:63:56:0,63,1281 +chrX 1320499 . C CT, 183.60 . AS_QUALapprox=|191|0;AS_VarDP=22|12|0;BaseQRankSum=0.308;DP=55;MQRankSum=0.000;QUALapprox=191;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-0.685;VarDP=34 GT:AD:DP:GQ:PL:SB 0/1:22,12,0:34:99:191,0,449,257,485,742:12,10,8,4 +chrX 1320500 . T . . END=1320663 GT:DP:GQ:MIN_DP:PL 0/0:58:57:58:0,57,1277 +chrX 1320664 . ATT A, 202.60 . AS_QUALapprox=|210|0;AS_VarDP=22|11|0;BaseQRankSum=0.252;DP=59;MQRankSum=-1.148;QUALapprox=210;RAW_GT_COUNT=0,1,0;RAW_MQandDP=210422,59;ReadPosRankSum=-0.774;VarDP=33 GT:AD:DP:GQ:PL:SB 0/1:22,11,0:33:99:210,0,496,275,528,803:7,15,6,5 +chrX 1320667 . T . . END=1320685 GT:DP:GQ:MIN_DP:PL 0/0:56:93:56:0,93,1395 +chrX 1320686 . G . . END=1320686 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,1216 +chrX 1320687 . T . . END=1320687 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 1320688 . A . . END=1320688 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,1099 +chrX 1320689 . T . . END=1321195 GT:DP:GQ:MIN_DP:PL 0/0:51:64:51:0,64,1110 +chrX 1321196 . A G, 758.64 . AS_QUALapprox=|766|0;AS_VarDP=22|29|0;BaseQRankSum=0.106;DP=53;MQRankSum=-0.831;QUALapprox=766;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190336,53;ReadPosRankSum=-1.208;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:22,29,0:51:99:766,0,547,831,634,1465:8,14,11,18 +chrX 1321197 . C . . END=1321255 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 1321256 . T C, 687.64 . AS_QUALapprox=|695|0;AS_VarDP=24|27|0;BaseQRankSum=-0.976;DP=55;MQRankSum=-0.904;QUALapprox=695;RAW_GT_COUNT=0,1,0;RAW_MQandDP=197536,55;ReadPosRankSum=0.934;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:24,27,0:51:99:695,0,631,767,712,1479:10,14,9,18 +chrX 1321257 . C . . END=1321308 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 1321309 . A G, 669.64 . AS_QUALapprox=|677|0;AS_VarDP=23|26|0;BaseQRankSum=-1.341;DP=53;MQRankSum=-0.900;QUALapprox=677;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190336,53;ReadPosRankSum=0.481;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:23,26,0:49:99:677,0,607,745,685,1430:10,13,12,14 +chrX 1321310 . A . . END=1321377 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 1321378 . T A, 747.64 . AS_QUALapprox=|755|0;AS_VarDP=29|30|0;BaseQRankSum=-1.333;DP=63;MQRankSum=-2.000;QUALapprox=755;RAW_GT_COUNT=0,1,0;RAW_MQandDP=221553,63;ReadPosRankSum=0.834;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:29,30,0:59:99:755,0,771,842,861,1703:19,10,14,16 +chrX 1321379 . G . . END=1321454 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 1321455 . T G, 649.64 . AS_QUALapprox=|657|0;AS_VarDP=24|21|0;BaseQRankSum=1.186;DP=45;MQRankSum=-2.189;QUALapprox=657;RAW_GT_COUNT=0,1,0;RAW_MQandDP=156753,45;ReadPosRankSum=-1.502;VarDP=45 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,21,0:45:99:0|1:1321455_T_G:657,0,798,728,861,1590:1321455:14,10,10,11 +chrX 1321456 . G . . END=1321469 GT:DP:GQ:MIN_DP:PL 0/0:44:96:44:0,96,1440 +chrX 1321470 . A AAAAT, 610.60 . AS_QUALapprox=|618|0;AS_VarDP=26|19|0;BaseQRankSum=1.703;DP=49;MQRankSum=-2.046;QUALapprox=618;RAW_GT_COUNT=0,1,0;RAW_MQandDP=173384,49;ReadPosRankSum=-0.162;VarDP=45 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,19,0:45:99:0|1:1321455_T_G:618,0,905,696,962,1657:1321455:17,9,10,9 +chrX 1321471 . A . . END=1321536 GT:DP:GQ:MIN_DP:PL 0/0:42:57:42:0,57,1156 +chrX 1321537 . T G, 564.64 . AS_QUALapprox=|572|0;AS_VarDP=22|24|0;BaseQRankSum=-1.304;DP=47;MQRankSum=0.000;QUALapprox=572;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=0.891;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:22,24,0:46:99:572,0,588,638,659,1296:14,8,16,8 +chrX 1321538 . G . . END=1321573 GT:DP:GQ:MIN_DP:PL 0/0:45:78:45:0,78,1217 +chrX 1321574 . C CA, 474.60 . AS_QUALapprox=|482|0;AS_VarDP=19|27|0;BaseQRankSum=-0.673;DP=56;MQRankSum=0.000;QUALapprox=482;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-0.134;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:19,27,0:46:99:482,0,314,539,394,932:13,6,13,14 +chrX 1321575 . A . . END=1321652 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 1321653 . G A, 678.64 . AS_QUALapprox=|686|0;AS_VarDP=33|26|0;BaseQRankSum=2.079;DP=61;MQRankSum=0.000;QUALapprox=686;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-0.359;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:33,26,0:59:99:686,0,810,784,888,1672:19,14,12,14 +chrX 1321654 . A . . END=1321857 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 1321858 . G A, 605.64 . AS_QUALapprox=|613|0;AS_VarDP=36|23|0;BaseQRankSum=2.959;DP=62;MQRankSum=0.000;QUALapprox=613;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=0.731;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:36,23,0:59:99:613,0,919,720,988,1709:18,18,9,14 +chrX 1321859 . G . . END=1321890 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,118,1676 +chrX 1321891 . G A, 466.64 . AS_QUALapprox=|474|0;AS_VarDP=33|19|0;BaseQRankSum=-0.354;DP=53;MQRankSum=0.000;QUALapprox=474;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=1.160;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:33,19,0:52:99:474,0,949,573,1006,1579:18,15,6,13 +chrX 1321892 . A . . END=1322061 GT:DP:GQ:MIN_DP:PL 0/0:56:98:56:0,98,1484 +chrX 1322062 . G A, 603.64 . AS_QUALapprox=|611|0;AS_VarDP=29|22|0;BaseQRankSum=1.273;DP=53;MQRankSum=0.000;QUALapprox=611;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=0.010;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:29,22,0:51:99:611,0,830,699,896,1595:21,8,9,13 +chrX 1322063 . A . . END=1322094 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,105,1510 +chrX 1322095 . T C, 573.64 . AS_QUALapprox=|581|0;AS_VarDP=21|25|0;BaseQRankSum=-2.557;DP=46;MQRankSum=-0.873;QUALapprox=581;RAW_GT_COUNT=0,1,0;RAW_MQandDP=164601,46;ReadPosRankSum=-0.474;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:21,25,0:46:99:581,0,584,644,657,1301:11,10,18,7 +chrX 1322096 . C . . END=1322098 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,120,1800 +chrX 1322099 . A ATTATTTATTTAT, 995.60 . AS_QUALapprox=|1003|0;AS_VarDP=15|25|0;BaseQRankSum=-0.815;DP=51;MQRankSum=-1.072;QUALapprox=1003;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180601,51;ReadPosRankSum=-1.930;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:15,25,0:40:99:1003,0,556,1050,631,1681:8,7,14,11 +chrX 1322100 . T . . END=1322168 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,117,1755 +chrX 1322169 . A G, 637.64 . AS_QUALapprox=|645|0;AS_VarDP=26|27|0;BaseQRankSum=-2.330;DP=53;MQRankSum=0.000;QUALapprox=645;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=2.083;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:26,27,0:53:99:645,0,726,723,806,1529:18,8,12,15 +chrX 1322170 . A . . END=1322270 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,99,1717 +chrX 1322271 . AT A, 342.60 . AS_QUALapprox=|350|0;AS_VarDP=23|18|0;BaseQRankSum=1.072;DP=54;MQRankSum=0.000;QUALapprox=350;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=-0.328;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:23,18,0:41:99:350,0,460,418,515,933:12,11,8,10 +chrX 1322273 . T . . END=1322438 GT:DP:GQ:MIN_DP:PL 0/0:53:86:53:0,86,1359 +chrX 1322439 . G GT, 280.60 . AS_QUALapprox=|288|0;AS_VarDP=7|20|0;BaseQRankSum=-2.289;DP=52;MQRankSum=0.000;QUALapprox=288;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=-1.745;VarDP=27 GT:AD:DP:GQ:PL:SB 0/1:7,20,0:27:46:288,0,46,309,103,411:3,4,6,14 +chrX 1322440 . T . . END=1322459 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,105,1575 +chrX 1322460 . G . . END=1322461 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,839 +chrX 1322462 . A . . END=1322598 GT:DP:GQ:MIN_DP:PL 0/0:45:61:45:0,61,1167 +chrX 1322599 . T C, 589.64 . AS_QUALapprox=|597|0;AS_VarDP=25|24|0;BaseQRankSum=-1.209;DP=52;MQRankSum=0.000;QUALapprox=597;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=-0.010;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:25,24,0:49:99:597,0,654,672,726,1398:13,12,14,10 +chrX 1322600 . G . . END=1322667 GT:DP:GQ:MIN_DP:PL 0/0:43:88:43:0,88,1206 +chrX 1322668 . T C, 557.64 . AS_QUALapprox=|565|0;AS_VarDP=18|22|0;BaseQRankSum=-1.511;DP=42;MQRankSum=0.000;QUALapprox=565;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151200,42;ReadPosRankSum=0.354;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:18,22,0:40:99:565,0,496,619,562,1181:5,13,9,13 +chrX 1322669 . C . . END=1322873 GT:DP:GQ:MIN_DP:PL 0/0:71:25:64:0,25,1161 +chrX 1322874 . A . . END=1322875 GT:DP:GQ:MIN_DP:PL 0/0:73:0:73:0,0,1712 +chrX 1322876 . T . . END=1322882 GT:DP:GQ:MIN_DP:PL 0/0:75:42:75:0,42,2013 +chrX 1322883 . A . . END=1322885 GT:DP:GQ:MIN_DP:PL 0/0:73:0:73:0,0,1763 +chrX 1322886 . T . . END=1322886 GT:DP:GQ:MIN_DP:PL 0/0:73:45:73:0,45,1978 +chrX 1322887 . T . . END=1322887 GT:DP:GQ:MIN_DP:PL 0/0:71:0:71:0,0,1681 +chrX 1322888 . G . . END=1322894 GT:DP:GQ:MIN_DP:PL 0/0:73:40:73:0,40,2000 +chrX 1322895 . C . . END=1322896 GT:DP:GQ:MIN_DP:PL 0/0:69:0:69:0,0,1563 +chrX 1322897 . A . . END=1322898 GT:DP:GQ:MIN_DP:PL 0/0:71:39:71:0,39,1979 +chrX 1322899 . A . . END=1322900 GT:DP:GQ:MIN_DP:PL 0/0:71:0:71:0,0,1712 +chrX 1322901 . A . . END=1322903 GT:DP:GQ:MIN_DP:PL 0/0:70:33:70:0,33,1960 +chrX 1322904 . C . . END=1322904 GT:DP:GQ:MIN_DP:PL 0/0:69:0:69:0,0,1603 +chrX 1322905 . A G, 1047.64 . AS_QUALapprox=|1055|0;AS_VarDP=23|40|0;BaseQRankSum=-1.258;DP=76;MQRankSum=-0.077;QUALapprox=1055;RAW_GT_COUNT=0,1,0;RAW_MQandDP=268809,76;ReadPosRankSum=-0.186;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:23,40,0:63:99:1055,0,517,1210,687,2248:14,9,24,16 +chrX 1322906 . G . . END=1322906 GT:DP:GQ:MIN_DP:PL 0/0:71:0:71:0,0,1683 +chrX 1322907 . A . . END=1322908 GT:DP:GQ:MIN_DP:PL 0/0:71:39:71:0,39,1990 +chrX 1322909 . C . . END=1322909 GT:DP:GQ:MIN_DP:PL 0/0:64:18:64:0,18,1777 +chrX 1322910 . A . . END=1322911 GT:DP:GQ:MIN_DP:PL 0/0:65:21:65:0,21,1781 +chrX 1322912 . G . . END=1322942 GT:DP:GQ:MIN_DP:PL 0/0:59:0:59:0,0,1412 +chrX 1322943 . C . . END=1323157 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,112,1556 +chrX 1323158 . T TATAAAATAAAATAAAATAAAATAAA,TATAAAATAAAATAAAATAAAATACA, 669.60 . AS_QUALapprox=|677|29|0;AS_VarDP=32|19|0|0;BaseQRankSum=-0.471;DP=71;MQRankSum=0.000;QUALapprox=677;RAW_GT_COUNT=0,1,0;RAW_MQandDP=254809,71;ReadPosRankSum=-0.917;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:32,19,0,0:51:99:677,0,1279,648,1343,2007,725,1342,2009,2060:19,13,12,7 +chrX 1323159 . A . . END=1323235 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 1323236 . G A, 630.64 . AS_QUALapprox=|638|0;AS_VarDP=52|28|0;BaseQRankSum=0.572;DP=80;MQRankSum=0.000;QUALapprox=638;RAW_GT_COUNT=0,1,0;RAW_MQandDP=288000,80;ReadPosRankSum=-0.182;VarDP=80 GT:AD:DP:GQ:PL:SB 0/1:52,28,0:80:99:638,0,1341,793,1425,2218:28,24,19,9 +chrX 1323237 . G . . END=1323289 GT:DP:GQ:MIN_DP:PL 0/0:76:99:76:0,120,1800 +chrX 1323290 . G C, 536.64 . AS_QUALapprox=|544|0;AS_VarDP=45|23|0;BaseQRankSum=-0.381;DP=70;MQRankSum=0.000;QUALapprox=544;RAW_GT_COUNT=0,1,0;RAW_MQandDP=252000,70;ReadPosRankSum=0.324;VarDP=68 GT:AD:DP:GQ:PL:SB 0/1:45,23,0:68:99:544,0,1280,679,1349,2028:23,22,14,9 +chrX 1323291 . A . . END=1323316 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 1323317 . C T, 698.64 . AS_QUALapprox=|706|0;AS_VarDP=41|28|0;BaseQRankSum=0.516;DP=71;MQRankSum=0.000;QUALapprox=706;RAW_GT_COUNT=0,1,0;RAW_MQandDP=255600,71;ReadPosRankSum=-0.544;VarDP=69 GT:AD:DP:GQ:PL:SB 0/1:41,28,0:69:99:706,0,1106,829,1190,2019:21,20,16,12 +chrX 1323318 . G . . END=1323751 GT:DP:GQ:MIN_DP:PL 0/0:59:91:59:0,91,1320 +chrX 1323752 . C T, 878.64 . AS_QUALapprox=|886|0;AS_VarDP=24|33|0;BaseQRankSum=0.910;DP=57;MQRankSum=-2.367;QUALapprox=886;RAW_GT_COUNT=0,1,0;RAW_MQandDP=196941,57;ReadPosRankSum=-0.016;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:24,33,0:57:99:886,0,558,958,657,1615:12,12,18,15 +chrX 1323753 . G . . END=1323779 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 1323780 . A C, 1702.06 . AS_QUALapprox=|1716|0;AS_VarDP=0|59|0;DP=59;QUALapprox=1716;RAW_GT_COUNT=0,0,1;RAW_MQandDP=197880,59;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1716,174,0,1716,174,1716:0,0,32,27 +chrX 1323781 . G . . END=1323981 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,103,1410 +chrX 1323982 . C G, 1301.06 . AS_QUALapprox=|1315|0;AS_VarDP=0|41|0;DP=42;QUALapprox=1315;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151200,42;VarDP=41 GT:AD:DP:GQ:PL:SB 1/1:0,41,0:41:99:1315,122,0,1315,122,1315:0,0,17,24 +chrX 1323983 . C . . END=1324012 GT:DP:GQ:MIN_DP:PL 0/0:41:93:41:0,93,1171 +chrX 1324013 . CA C, 862.03 . AS_QUALapprox=|876|0;AS_VarDP=1|34|0;DP=44;MQRankSum=6.002;QUALapprox=876;RAW_GT_COUNT=0,0,1;RAW_MQandDP=157716,44;VarDP=35 GT:AD:DP:GQ:PL:SB 1/1:1,34,0:35:80:876,80,0,879,102,901:0,1,15,19 +chrX 1324015 . A . . END=1324352 GT:DP:GQ:MIN_DP:PL 0/0:50:59:50:0,59,926 +chrX 1324353 . G . . END=1324354 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,838 +chrX 1324355 . A . . END=1324361 GT:DP:GQ:MIN_DP:PL 0/0:40:70:40:0,70,965 +chrX 1324362 . G . . END=1324362 GT:DP:GQ:MIN_DP:PL 0/0:36:5:36:0,5,843 +chrX 1324363 . A . . END=1324374 GT:DP:GQ:MIN_DP:PL 0/0:41:42:41:0,42,975 +chrX 1324375 . G . . END=1324375 GT:DP:GQ:MIN_DP:PL 0/0:40:16:40:0,16,941 +chrX 1324376 . A . . END=1324412 GT:DP:GQ:MIN_DP:PL 0/0:33:48:28:0,48,818 +chrX 1324413 . G GGAAA, 280.60 . AS_QUALapprox=|288|0;AS_VarDP=16|8|0;BaseQRankSum=0.350;DP=30;MQRankSum=0.000;QUALapprox=288;RAW_GT_COUNT=0,1,0;RAW_MQandDP=108000,30;ReadPosRankSum=-0.460;VarDP=24 GT:AD:DP:GQ:PL:SB 0/1:16,8,0:24:99:288,0,636,336,660,996:7,9,5,3 +chrX 1324414 . G . . END=1324451 GT:DP:GQ:MIN_DP:PL 0/0:26:43:26:0,43,814 +chrX 1324452 . AAAAG A, 320.60 . AS_QUALapprox=|328|0;AS_VarDP=12|9|0;BaseQRankSum=0.410;DP=27;MQRankSum=0.000;QUALapprox=328;RAW_GT_COUNT=0,1,0;RAW_MQandDP=97200,27;ReadPosRankSum=0.462;VarDP=21 GT:AD:DP:GQ:PL:SB 0/1:12,9,0:21:99:328,0,477,364,504,868:8,4,9,0 +chrX 1324457 . A . . END=1324515 GT:DP:GQ:MIN_DP:PL 0/0:21:35:20:0,35,591 +chrX 1324516 . A G, 311.64 . AS_QUALapprox=|319|0;AS_VarDP=10|11|0;BaseQRankSum=2.327;DP=21;MQRankSum=0.000;QUALapprox=319;RAW_GT_COUNT=0,1,0;RAW_MQandDP=75600,21;ReadPosRankSum=-0.141;VarDP=21 GT:AD:DP:GQ:PL:SB 0/1:10,11,0:21:99:319,0,242,349,275,624:9,1,11,0 +chrX 1324517 . G . . END=1324559 GT:DP:GQ:MIN_DP:PL 0/0:20:42:20:0,42,456 +chrX 1324560 . A G, 376.64 . AS_QUALapprox=|384|0;AS_VarDP=12|14|0;BaseQRankSum=-0.849;DP=26;MQRankSum=0.000;QUALapprox=384;RAW_GT_COUNT=0,1,0;RAW_MQandDP=93600,26;ReadPosRankSum=0.103;VarDP=26 GT:AD:DP:GQ:PL:SB 0/1:12,14,0:26:99:384,0,339,420,381,801:8,4,8,6 +chrX 1324561 . A . . END=1325367 GT:DP:GQ:MIN_DP:PL 0/0:26:33:24:0,33,585 +chrX 1325368 . A . . END=1325368 GT:DP:GQ:MIN_DP:PL 0/0:20:11:20:0,11,557 +chrX 1325369 . G . . END=1325379 GT:DP:GQ:MIN_DP:PL 0/0:15:20:15:0,20,462 +chrX 1325380 . G . . END=1325381 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,372 +chrX 1325382 . G . . END=1325382 GT:DP:GQ:MIN_DP:PL 0/0:15:30:15:0,30,450 +chrX 1325383 . A . . END=1325383 GT:DP:GQ:MIN_DP:PL 0/0:17:0:17:0,0,382 +chrX 1325384 . G . . END=1325384 GT:DP:GQ:MIN_DP:PL 0/0:18:42:18:0,42,630 +chrX 1325385 . G . . END=1325385 GT:DP:GQ:MIN_DP:PL 0/0:18:0:18:0,0,477 +chrX 1325386 . G . . END=1325387 GT:DP:GQ:MIN_DP:PL 0/0:18:36:18:0,36,540 +chrX 1325388 . A . . END=1325388 GT:DP:GQ:MIN_DP:PL 0/0:17:0:17:0,0,333 +chrX 1325389 . G . . END=1325389 GT:DP:GQ:MIN_DP:PL 0/0:17:36:17:0,36,540 +chrX 1325390 . G . . END=1325390 GT:DP:GQ:MIN_DP:PL 0/0:17:0:17:0,0,452 +chrX 1325391 . G . . END=1325391 GT:DP:GQ:MIN_DP:PL 0/0:17:36:17:0,36,540 +chrX 1325392 . G . . END=1325393 GT:DP:GQ:MIN_DP:PL 0/0:17:0:17:0,0,264 +chrX 1325394 . G . . END=1325394 GT:DP:GQ:MIN_DP:PL 0/0:17:39:17:0,39,585 +chrX 1325395 . G . . END=1325395 GT:DP:GQ:MIN_DP:PL 0/0:17:0:17:0,0,382 +chrX 1325396 . G . . END=1325396 GT:DP:GQ:MIN_DP:PL 0/0:17:36:17:0,36,540 +chrX 1325397 . A . . END=1325401 GT:DP:GQ:MIN_DP:PL 0/0:15:0:15:0,0,224 +chrX 1325402 . G . . END=1325403 GT:DP:GQ:MIN_DP:PL 0/0:15:33:15:0,33,495 +chrX 1325404 . A . . END=1325405 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,143 +chrX 1325406 . G . . END=1325406 GT:DP:GQ:MIN_DP:PL 0/0:14:33:14:0,33,495 +chrX 1325407 . A . . END=1325407 GT:DP:GQ:MIN_DP:PL 0/0:12:0:12:0,0,119 +chrX 1325408 . G . . END=1325408 GT:DP:GQ:MIN_DP:PL 0/0:12:27:12:0,27,405 +chrX 1325409 . A . . END=1325410 GT:DP:GQ:MIN_DP:PL 0/0:13:0:13:0,0,70 +chrX 1325411 . G . . END=1325412 GT:DP:GQ:MIN_DP:PL 0/0:13:27:12:0,27,405 +chrX 1325413 . G . . END=1325414 GT:DP:GQ:MIN_DP:PL 0/0:13:0:13:0,0,15 +chrX 1325415 . G . . END=1325416 GT:DP:GQ:MIN_DP:PL 0/0:13:33:13:0,33,495 +chrX 1325417 . G . . END=1325419 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,0 +chrX 1325420 . G . . END=1325421 GT:DP:GQ:MIN_DP:PL 0/0:13:36:13:0,36,452 +chrX 1325422 . C . . END=1325423 GT:DP:GQ:MIN_DP:PL 0/0:12:0:12:0,0,0 +chrX 1325424 . G . . END=1325425 GT:DP:GQ:MIN_DP:PL 0/0:13:33:13:0,33,495 +chrX 1325426 . A . . END=1325428 GT:DP:GQ:MIN_DP:PL 0/0:13:0:13:0,0,0 +chrX 1325429 . G . . END=1325429 GT:DP:GQ:MIN_DP:PL 0/0:13:30:13:0,30,450 +chrX 1325430 . A . . END=1325430 GT:DP:GQ:MIN_DP:PL 0/0:13:0:13:0,0,0 +chrX 1325431 . G . . END=1325432 GT:DP:GQ:MIN_DP:PL 0/0:14:30:14:0,30,450 +chrX 1325433 . G . . END=1325438 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,0 +chrX 1325439 . G . . END=1325444 GT:DP:GQ:MIN_DP:PL 0/0:15:36:15:0,36,540 +chrX 1325445 . G . . END=1325446 GT:DP:GQ:MIN_DP:PL 0/0:15:7:15:0,7,367 +chrX 1325447 . G . . END=1325451 GT:DP:GQ:MIN_DP:PL 0/0:14:33:14:0,33,342 +chrX 1325452 . G . . END=1325453 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,283 +chrX 1325454 . G . . END=1325454 GT:DP:GQ:MIN_DP:PL 0/0:15:42:15:0,42,630 +chrX 1325455 . A . . END=1325457 GT:DP:GQ:MIN_DP:PL 0/0:15:0:15:0,0,283 +chrX 1325458 . G . . END=1325458 GT:DP:GQ:MIN_DP:PL 0/0:16:45:16:0,45,675 +chrX 1325459 . A . . END=1325462 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,167 +chrX 1325463 . G . . END=1325464 GT:DP:GQ:MIN_DP:PL 0/0:17:45:17:0,45,675 +chrX 1325465 . G . . END=1325465 GT:DP:GQ:MIN_DP:PL 0/0:17:16:17:0,16,471 +chrX 1325466 . G . . END=1325466 GT:DP:GQ:MIN_DP:PL 0/0:17:45:17:0,45,675 +chrX 1325467 . A . . END=1325467 GT:DP:GQ:MIN_DP:PL 0/0:18:19:18:0,19,506 +chrX 1325468 . G . . END=1325468 GT:DP:GQ:MIN_DP:PL 0/0:17:48:17:0,48,720 +chrX 1325469 . G . . END=1325469 GT:DP:GQ:MIN_DP:PL 0/0:17:2:17:0,2,452 +chrX 1325470 . A . . END=1326320 GT:DP:GQ:MIN_DP:PL 0/0:19:32:17:0,32,520 +chrX 1326321 . A G, 888.64 . AS_QUALapprox=|896|0;AS_VarDP=37|36|0;BaseQRankSum=-0.644;DP=74;MQRankSum=0.000;QUALapprox=896;RAW_GT_COUNT=0,1,0;RAW_MQandDP=262400,74;ReadPosRankSum=1.325;VarDP=73 GT:AD:DP:GQ:PL:SB 0/1:37,36,0:73:99:896,0,967,1007,1075,2082:14,23,15,21 +chrX 1326322 . G . . END=1326540 GT:DP:GQ:MIN_DP:PL 0/0:67:50:67:0,50,1578 +chrX 1326541 . T . . END=1326541 GT:DP:GQ:MIN_DP:PL 0/0:67:8:67:0,8,1682 +chrX 1326542 . G . . END=1326598 GT:DP:GQ:MIN_DP:PL 0/0:62:52:62:0,52,1637 +chrX 1326599 . C T, 935.64 . AS_QUALapprox=|943|0;AS_VarDP=18|35|0;BaseQRankSum=-0.688;DP=55;MQRankSum=0.540;QUALapprox=943;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194841,55;ReadPosRankSum=0.301;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:18,35,0:53:99:943,0,407,996,512,1509:11,7,19,16 +chrX 1326600 . C . . END=1326724 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 1326725 . C CA, 744.60 . AS_QUALapprox=|752|0;AS_VarDP=18|31|0;BaseQRankSum=0.566;DP=58;MQRankSum=0.000;QUALapprox=752;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-1.473;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:18,31,0:49:99:752,0,392,807,485,1292:8,10,11,20 +chrX 1326726 . A . . END=1326781 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1326782 . T G, 908.64 . AS_QUALapprox=|916|0;AS_VarDP=32|35|0;BaseQRankSum=0.071;DP=69;MQRankSum=0.000;QUALapprox=916;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=2.625;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:32,35,0:67:99:916,0,841,1012,945,1957:23,9,22,13 +chrX 1326783 . T . . END=1326981 GT:DP:GQ:MIN_DP:PL 0/0:79:78:79:0,78,1800 +chrX 1326982 . A . . END=1326982 GT:DP:GQ:MIN_DP:PL 0/0:85:0:85:0,0,2099 +chrX 1326983 . G . . END=1326984 GT:DP:GQ:MIN_DP:PL 0/0:90:99:90:0,120,1800 +chrX 1326985 . A . . END=1326985 GT:DP:GQ:MIN_DP:PL 0/0:81:5:81:0,5,2017 +chrX 1326986 . A . . END=1327117 GT:DP:GQ:MIN_DP:PL 0/0:80:37:72:0,37,1800 +chrX 1327118 . T G, 1113.64 . AS_QUALapprox=|1121|0;AS_VarDP=39|31|0;BaseQRankSum=-0.404;DP=70;MQRankSum=0.000;QUALapprox=1121;RAW_GT_COUNT=0,1,0;RAW_MQandDP=252000,70;ReadPosRankSum=-1.174;VarDP=70 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:39,31,0:70:99:0|1:1327118_T_G:1121,0,1525,1239,1618,2856:1327118:20,19,19,12 +chrX 1327119 . G . . END=1327119 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 1327120 . T C, 1113.64 . AS_QUALapprox=|1121|0;AS_VarDP=39|31|0;BaseQRankSum=-1.245;DP=72;MQRankSum=0.000;QUALapprox=1121;RAW_GT_COUNT=0,1,0;RAW_MQandDP=259200,72;ReadPosRankSum=-0.976;VarDP=70 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:39,31,0:70:99:0|1:1327118_T_G:1121,0,1525,1239,1618,2856:1327118:20,19,19,12 +chrX 1327121 . G . . END=1327239 GT:DP:GQ:MIN_DP:PL 0/0:72:85:72:0,85,1800 +chrX 1327240 . A . . END=1327240 GT:DP:GQ:MIN_DP:PL 0/0:65:0:65:0,0,1611 +chrX 1327241 . T . . END=1327295 GT:DP:GQ:MIN_DP:PL 0/0:59:43:59:0,43,1529 +chrX 1327296 . A G, 556.64 . AS_QUALapprox=|564|0;AS_VarDP=29|23|0;BaseQRankSum=0.715;DP=57;MQRankSum=1.854;QUALapprox=564;RAW_GT_COUNT=0,1,0;RAW_MQandDP=196174,57;ReadPosRankSum=-1.419;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:29,23,0:52:99:564,0,773,651,841,1493:10,19,7,16 +chrX 1327297 . G . . END=1328260 GT:DP:GQ:MIN_DP:PL 0/0:50:20:46:0,20,1120 +chrX 1328261 . G . . END=1328262 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,600 +chrX 1328263 . G . . END=1328273 GT:DP:GQ:MIN_DP:PL 0/0:32:21:30:0,21,724 +chrX 1328274 . A . . END=1328274 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,710 +chrX 1328275 . C . . END=1328300 GT:DP:GQ:MIN_DP:PL 0/0:29:23:24:0,23,641 +chrX 1328301 . C . . END=1328301 GT:DP:GQ:MIN_DP:PL 0/0:35:1:35:0,1,787 +chrX 1328302 . T . . END=1328305 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1440 +chrX 1328306 . A . . END=1328306 GT:DP:GQ:MIN_DP:PL 0/0:33:6:33:0,6,790 +chrX 1328307 . G . . END=1328307 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +chrX 1328308 . A . . END=1328308 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,716 +chrX 1328309 . T . . END=1328311 GT:DP:GQ:MIN_DP:PL 0/0:42:90:42:0,90,1350 +chrX 1328312 . G . . END=1328312 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,512 +chrX 1328313 . T . . END=1328335 GT:DP:GQ:MIN_DP:PL 0/0:46:69:46:0,69,1035 +chrX 1328336 . G . . END=1328337 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,485 +chrX 1328338 . G . . END=1328342 GT:DP:GQ:MIN_DP:PL 0/0:37:22:36:0,22,916 +chrX 1328343 . A . . END=1328343 GT:DP:GQ:MIN_DP:PL 0/0:37:8:37:0,8,890 +chrX 1328344 . G . . END=1328348 GT:DP:GQ:MIN_DP:PL 0/0:37:71:37:0,71,985 +chrX 1328349 . A . . END=1328349 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,753 +chrX 1328350 . C . . END=1328382 GT:DP:GQ:MIN_DP:PL 0/0:37:25:33:0,25,889 +chrX 1328383 . A . . END=1328383 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,763 +chrX 1328384 . T . . END=1328386 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,99,1347 +chrX 1328387 . C . . END=1328387 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,868 +chrX 1328388 . T . . END=1328388 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,99,1485 +chrX 1328389 . A AT, 403.03 . AS_QUALapprox=|417|0;AS_VarDP=0|17|0;DP=23;QUALapprox=417;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75035,23;VarDP=17 GT:AD:DP:GQ:PL:SB 1/1:0,17,0:17:50:417,50,0,417,50,417:0,0,4,13 +chrX 1328390 . T . . END=1328402 GT:DP:GQ:MIN_DP:PL 0/0:44:60:44:0,60,1306 +chrX 1328403 . C . . END=1328403 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,808 +chrX 1328404 . T . . END=1328408 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,117,1755 +chrX 1328409 . G . . END=1328409 GT:DP:GQ:MIN_DP:PL 0/0:42:17:42:0,17,1142 +chrX 1328410 . A . . END=1328446 GT:DP:GQ:MIN_DP:PL 0/0:39:59:39:0,59,987 +chrX 1328447 . C . . END=1328447 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,751 +chrX 1328448 . T . . END=1328451 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,102,1020 +chrX 1328452 . A . . END=1328452 GT:DP:GQ:MIN_DP:PL 0/0:36:5:36:0,5,843 +chrX 1328453 . C . . END=1328461 GT:DP:GQ:MIN_DP:PL 0/0:39:23:36:0,23,962 +chrX 1328462 . G . . END=1328462 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,1062 +chrX 1328463 . T . . END=1328480 GT:DP:GQ:MIN_DP:PL 0/0:42:49:42:0,49,983 +chrX 1328481 . A . . END=1328481 GT:DP:GQ:MIN_DP:PL 0/0:32:2:32:0,2,823 +chrX 1328482 . G . . END=1328493 GT:DP:GQ:MIN_DP:PL 0/0:32:47:32:0,47,899 +chrX 1328494 . C G, 586.64 . AS_QUALapprox=|594|0;AS_VarDP=9|16|0;BaseQRankSum=-1.559;DP=29;MQRankSum=1.417;QUALapprox=594;RAW_GT_COUNT=0,1,0;RAW_MQandDP=101453,29;ReadPosRankSum=0.085;VarDP=25 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:9,16,0:25:99:0|1:1328494_C_G:594,0,328,621,376,997:1328494:5,4,10,6 +chrX 1328495 . T . . END=1328532 GT:DP:GQ:MIN_DP:PL 0/0:26:69:26:0,69,743 +chrX 1328533 . A AT, 666.60 . AS_QUALapprox=|674|0;AS_VarDP=11|19|0;BaseQRankSum=-1.453;DP=33;MQRankSum=-0.083;QUALapprox=674;RAW_GT_COUNT=0,1,0;RAW_MQandDP=114382,33;ReadPosRankSum=-0.582;VarDP=30 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:11,19,0:30:99:0|1:1328494_C_G:674,0,375,707,432,1140:1328494:7,4,14,5 +chrX 1328534 . T . . END=1328539 GT:DP:GQ:MIN_DP:PL 0/0:28:54:28:0,54,810 +chrX 1328540 . A . . END=1328540 GT:DP:GQ:MIN_DP:PL 0/0:26:0:26:0,0,475 +chrX 1328541 . T . . END=1328603 GT:DP:GQ:MIN_DP:PL 0/0:17:33:16:0,33,486 +chrX 1328604 . C . . END=1328604 GT:DP:GQ:MIN_DP:PL 0/0:18:0:18:0,0,477 +chrX 1328605 . T . . END=1328605 GT:DP:GQ:MIN_DP:PL 0/0:18:51:18:0,51,765 +chrX 1328606 . ATT A, 101.60 . AS_QUALapprox=|109|0;AS_VarDP=16|5|0;BaseQRankSum=1.354;DP=25;MQRankSum=0.671;QUALapprox=109;RAW_GT_COUNT=0,1,0;RAW_MQandDP=89316,25;ReadPosRankSum=-1.475;VarDP=21 GT:AD:DP:GQ:PL:SB 0/1:16,5,0:21:99:109,0,436,155,451,606:9,7,4,1 +chrX 1328609 . T . . END=1328633 GT:DP:GQ:MIN_DP:PL 0/0:23:51:23:0,51,600 +chrX 1328634 . G A, 13.63 . AS_QUALapprox=|21|0;AS_VarDP=21|2|0;BaseQRankSum=-1.623;DP=24;MQRankSum=0.463;QUALapprox=21;RAW_GT_COUNT=0,1,0;RAW_MQandDP=85716,24;ReadPosRankSum=0.109;VarDP=23 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,2,0:23:21:0|1:1328634_G_A:21,0,840,84,846,930:1328634:9,12,1,1 +chrX 1328635 . C . . END=1328645 GT:DP:GQ:MIN_DP:PL 0/0:24:37:24:0,37,715 +chrX 1328646 . A G, 10.64 . AS_QUALapprox=|18|0;AS_VarDP=22|2|0;BaseQRankSum=-2.585;DP=24;MQRankSum=0.452;QUALapprox=18;RAW_GT_COUNT=0,1,0;RAW_MQandDP=85716,24;ReadPosRankSum=-0.523;VarDP=24 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,2,0:24:18:0|1:1328634_G_A:18,0,871,84,877,961:1328634:10,12,1,1 +chrX 1328647 . G . . END=1328672 GT:DP:GQ:MIN_DP:PL 0/0:24:23:24:0,23,685 +chrX 1328673 . C T, 354.64 . AS_QUALapprox=|362|0;AS_VarDP=14|14|0;BaseQRankSum=-0.482;DP=30;MQRankSum=-0.929;QUALapprox=362;RAW_GT_COUNT=0,1,0;RAW_MQandDP=104941,30;ReadPosRankSum=1.080;VarDP=28 GT:AD:DP:GQ:PL:SB 0/1:14,14,0:28:99:362,0,369,404,410,814:9,5,5,9 +chrX 1328674 . A . . END=1328736 GT:DP:GQ:MIN_DP:PL 0/0:29:41:28:0,41,770 +chrX 1328737 . C . . END=1328737 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,982 +chrX 1328738 . T . . END=1328748 GT:DP:GQ:MIN_DP:PL 0/0:45:50:45:0,50,1023 +chrX 1328749 . A . . END=1328749 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,934 +chrX 1328750 . G . . END=1328760 GT:DP:GQ:MIN_DP:PL 0/0:39:53:39:0,53,1087 +chrX 1328761 . A . . END=1328761 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,875 +chrX 1328762 . C . . END=1328794 GT:DP:GQ:MIN_DP:PL 0/0:42:48:42:0,48,1116 +chrX 1328795 . A . . END=1328795 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,1042 +chrX 1328796 . T . . END=1328804 GT:DP:GQ:MIN_DP:PL 0/0:55:55:55:0,55,1421 +chrX 1328805 . C . . END=1328805 GT:DP:GQ:MIN_DP:PL 0/0:54:18:54:0,18,1409 +chrX 1328806 . T . . END=1329393 GT:DP:GQ:MIN_DP:PL 0/0:55:83:55:0,83,1241 +chrX 1329394 . C T, 899.64 . AS_QUALapprox=|907|0;AS_VarDP=23|32|0;BaseQRankSum=0.919;DP=58;MQRankSum=0.000;QUALapprox=907;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=0.085;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:23,32,0:55:99:907,0,584,976,680,1656:13,10,13,19 +chrX 1329395 . C . . END=1331188 GT:DP:GQ:MIN_DP:PL 0/0:49:34:36:0,34,873 +chrX 1331189 . C CAAAAAA, 0.01 . AS_QUALapprox=|1|0;AS_VarDP=38|3|0;BaseQRankSum=-0.669;DP=50;MQRankSum=-3.465;QUALapprox=1;RAW_GT_COUNT=0,1,0;RAW_MQandDP=179185,50;ReadPosRankSum=0.733;VarDP=41 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:38,3,0:41:1:0|1:1331189_C_CAAAAAA:1,0,1551,116,1560,1675:1331189:16,22,1,2 +chrX 1331190 . A . . END=1331200 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,111,1665 +chrX 1331201 . T . . END=1331201 GT:DP:GQ:MIN_DP:PL 0/0:47:2:47:0,2,1584 +chrX 1331202 . T . . END=1331262 GT:DP:GQ:MIN_DP:PL 0/0:61:92:61:0,92,1280 +chrX 1331263 . A . . END=1331263 GT:DP:GQ:MIN_DP:PL 0/0:70:0:70:0,0,1745 +chrX 1331264 . C . . END=1332317 GT:DP:GQ:MIN_DP:PL 0/0:58:31:51:0,31,1395 +chrX 1332318 . G A, 2138.06 . AS_QUALapprox=|2152|0;AS_VarDP=0|68|0;DP=71;QUALapprox=2152;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;VarDP=68 GT:AD:DP:GQ:PL:SB 1/1:0,68,0:68:99:2152,203,0,2152,203,2152:0,0,38,30 +chrX 1332319 . T . . END=1332805 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,117,1800 +chrX 1332806 . C CT, 1306.03 . AS_QUALapprox=|1320|0;AS_VarDP=0|53|0;DP=63;QUALapprox=1320;RAW_GT_COUNT=0,0,1;RAW_MQandDP=220800,63;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,53,0:53:99:0|1:1332806_C_CT:1320,158,0,1320,158,1320:1332806:0,0,33,20 +chrX 1332807 . T . . END=1332822 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1332823 . G . . END=1332823 GT:DP:GQ:MIN_DP:PL 0/0:67:7:67:0,7,1141 +chrX 1332824 . A . . END=1333056 GT:DP:GQ:MIN_DP:PL 0/0:51:86:51:0,86,1310 +chrX 1333057 . GC G, 1756.03 . AS_QUALapprox=|1770|0;AS_VarDP=0|50|0;DP=57;QUALapprox=1770;RAW_GT_COUNT=0,0,1;RAW_MQandDP=203257,57;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1770,150,0,1770,150,1770:0,0,24,26 +chrX 1333059 . C . . END=1333259 GT:DP:GQ:MIN_DP:PL 0/0:51:84:51:0,84,1222 +chrX 1333260 . A AT,ATT, 880.03 . AS_QUALapprox=|336|894|0;AS_VarDP=0|1|26|0;DP=41;QUALapprox=894;RAW_GT_COUNT=0,0,1;RAW_MQandDP=145681,41;VarDP=27 GT:AD:DP:GQ:PL:SB 2/2:0,1,26,0:27:56:894,634,558,84,56,0,791,614,83,738:0,0,15,12 +chrX 1333261 . T . . END=1333275 GT:DP:GQ:MIN_DP:PL 0/0:48:90:48:0,90,1350 +chrX 1333276 . G . . END=1333277 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,762 +chrX 1333278 . G . . END=1333282 GT:DP:GQ:MIN_DP:PL 0/0:38:64:38:0,64,1056 +chrX 1333283 . A . . END=1333283 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,933 +chrX 1333284 . G . . END=1333673 GT:DP:GQ:MIN_DP:PL 0/0:52:51:52:0,51,901 +chrX 1333674 . G A, 617.64 . AS_QUALapprox=|625|0;AS_VarDP=27|26|0;BaseQRankSum=0.513;DP=58;MQRankSum=-0.981;QUALapprox=625;RAW_GT_COUNT=0,1,0;RAW_MQandDP=206681,58;ReadPosRankSum=-0.721;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:27,26,0:53:99:625,0,605,705,683,1388:14,13,12,14 +chrX 1333675 . C . . END=1333899 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,110,1613 +chrX 1333900 . C T, 435.64 . AS_QUALapprox=|443|0;AS_VarDP=28|18|0;BaseQRankSum=-0.162;DP=50;MQRankSum=0.846;QUALapprox=443;RAW_GT_COUNT=0,1,0;RAW_MQandDP=177649,50;ReadPosRankSum=0.992;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:28,18,0:46:99:443,0,766,527,820,1346:13,15,12,6 +chrX 1333901 . A . . END=1334149 GT:DP:GQ:MIN_DP:PL 0/0:48:57:48:0,57,1149 +chrX 1334150 . A C,T, 631.64 . AS_QUALapprox=|0|639|0;AS_VarDP=27|2|23|0;BaseQRankSum=0.628;DP=52;MQRankSum=0.000;QUALapprox=639;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=-1.576;VarDP=52 GT:AD:DP:GQ:PL:SB 0/2:27,2,23,0:52:99:639,691,1478,0,764,723,720,1484,793,1512:16,11,14,11 +chrX 1334151 . C . . END=1334398 GT:DP:GQ:MIN_DP:PL 0/0:66:74:66:0,74,1800 +chrX 1334399 . G . . END=1334403 GT:DP:GQ:MIN_DP:PL 0/0:72:0:72:0,0,1806 +chrX 1334404 . G . . END=1334404 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 1334405 . G . . END=1334412 GT:DP:GQ:MIN_DP:PL 0/0:68:0:68:0,0,1653 +chrX 1334413 . T . . END=1334413 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 1334414 . C . . END=1334418 GT:DP:GQ:MIN_DP:PL 0/0:69:0:69:0,0,1748 +chrX 1334419 . C . . END=1334419 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 1334420 . A . . END=1334422 GT:DP:GQ:MIN_DP:PL 0/0:66:0:66:0,0,1593 +chrX 1334423 . T . . END=1334458 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 1334459 . T C, 610.64 . AS_QUALapprox=|618|0;AS_VarDP=29|28|0;BaseQRankSum=-2.192;DP=64;MQRankSum=0.060;QUALapprox=618;RAW_GT_COUNT=0,1,0;RAW_MQandDP=221210,64;ReadPosRankSum=-1.022;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:29,28,0:57:99:618,0,784,705,866,1571:21,8,13,15 +chrX 1334460 . G . . END=1334515 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,101,1529 +chrX 1334516 . T . . END=1334516 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,339 +chrX 1334517 . A . . END=1334520 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,108,1620 +chrX 1334521 . C . . END=1334521 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,462 +chrX 1334522 . A . . END=1334533 GT:DP:GQ:MIN_DP:PL 0/0:45:41:45:0,41,1098 +chrX 1334534 . C . . END=1334534 GT:DP:GQ:MIN_DP:PL 0/0:48:11:48:0,11,1291 +chrX 1334535 . A . . END=1334535 GT:DP:GQ:MIN_DP:PL 0/0:56:74:56:0,74,1668 +chrX 1334536 . G . . END=1334537 GT:DP:GQ:MIN_DP:PL 0/0:60:0:60:0,0,468 +chrX 1334538 . A . . END=1334551 GT:DP:GQ:MIN_DP:PL 0/0:73:99:73:0,111,1665 +chrX 1334552 . A . . END=1334552 GT:DP:GQ:MIN_DP:PL 0/0:75:2:75:0,2,2061 +chrX 1334553 . A . . END=1334562 GT:DP:GQ:MIN_DP:PL 0/0:75:27:75:0,27,1800 +chrX 1334563 . G . . END=1334563 GT:DP:GQ:MIN_DP:PL 0/0:73:0:73:0,0,1722 +chrX 1334564 . A . . END=1334564 GT:DP:GQ:MIN_DP:PL 0/0:71:39:71:0,39,1999 +chrX 1334565 . T . . END=1334565 GT:DP:GQ:MIN_DP:PL 0/0:72:0:72:0,0,1713 +chrX 1334566 . A . . END=1334796 GT:DP:GQ:MIN_DP:PL 0/0:66:25:61:0,25,1800 +chrX 1334797 . G C, 1711.06 . AS_QUALapprox=|1725|0;AS_VarDP=1|57|0;BaseQRankSum=1.871;DP=59;MQRankSum=-0.094;QUALapprox=1725;RAW_GT_COUNT=0,0,1;RAW_MQandDP=209161,59;ReadPosRankSum=0.717;VarDP=58 GT:AD:DP:GQ:PL:SB 1/1:1,57,0:58:99:1725,162,0,1728,169,1735:0,1,30,27 +chrX 1334798 . A . . END=1334864 GT:DP:GQ:MIN_DP:PL 0/0:49:55:49:0,55,905 +chrX 1334865 . GA G,GAA, 672.02 . AS_QUALapprox=|377|229|0;AS_VarDP=0|20|15|0;DP=53;QUALapprox=689;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=35 GT:AD:DP:GQ:PL:SB 1/2:0,20,15,0:35:99:689,312,377,460,0,551,751,383,540,863:0,0,13,22 +chrX 1334867 . A . . END=1335190 GT:DP:GQ:MIN_DP:PL 0/0:62:58:62:0,58,1453 +chrX 1335191 . G A, 736.64 . AS_QUALapprox=|744|0;AS_VarDP=40|30|0;BaseQRankSum=1.062;DP=73;MQRankSum=0.000;QUALapprox=744;RAW_GT_COUNT=0,1,0;RAW_MQandDP=262800,73;ReadPosRankSum=-1.241;VarDP=70 GT:AD:DP:GQ:PL:SB 0/1:40,30,0:70:99:744,0,1021,863,1110,1973:17,23,18,12 +chrX 1335192 . A . . END=1335417 GT:DP:GQ:MIN_DP:PL 0/0:70:86:70:0,86,1409 +chrX 1335418 . AT A,ATT,TT, 642.02 . AS_QUALapprox=|299|273|0|0;AS_VarDP=0|17|17|2|0;DP=52;QUALapprox=659;RAW_GT_COUNT=0,0,1;RAW_MQandDP=186849,52;VarDP=36 GT:AD:DP:GQ:PL:SB 1/2:0,17,17,2,0:36:99:659,360,472,386,0,539,706,460,605,1545,749,494,591,1084,1076:0,0,15,21 +chrX 1335420 . T . . END=1335503 GT:DP:GQ:MIN_DP:PL 0/0:48:63:48:0,63,1260 +chrX 1335504 . G A, 654.64 . AS_QUALapprox=|662|0;AS_VarDP=24|27|0;BaseQRankSum=-0.077;DP=54;MQRankSum=-0.904;QUALapprox=662;RAW_GT_COUNT=0,1,0;RAW_MQandDP=193936,54;ReadPosRankSum=1.256;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:24,27,0:51:99:662,0,542,732,623,1355:11,13,16,11 +chrX 1335505 . C . . END=1335746 GT:DP:GQ:MIN_DP:PL 0/0:56:60:56:0,60,1314 +chrX 1335747 . G . . END=1335747 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1255 +chrX 1335748 . A . . END=1335749 GT:DP:GQ:MIN_DP:PL 0/0:47:57:47:0,57,1295 +chrX 1335750 . A . . END=1335750 GT:DP:GQ:MIN_DP:PL 0/0:47:7:47:0,7,1135 +chrX 1335751 . C . . END=1336121 GT:DP:GQ:MIN_DP:PL 0/0:58:56:58:0,56,1298 +chrX 1336122 . G A, 668.64 . AS_QUALapprox=|676|0;AS_VarDP=22|26|0;BaseQRankSum=0.481;DP=50;MQRankSum=1.129;QUALapprox=676;RAW_GT_COUNT=0,1,0;RAW_MQandDP=179881,50;ReadPosRankSum=0.755;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:22,26,0:48:99:676,0,521,741,599,1340:11,11,14,12 +chrX 1336123 . C . . END=1336378 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1336379 . C T, 661.64 . AS_QUALapprox=|669|0;AS_VarDP=24|26|0;BaseQRankSum=-0.904;DP=55;MQRankSum=0.000;QUALapprox=669;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-1.262;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:24,26,0:50:99:669,0,644,741,722,1463:10,14,14,12 +chrX 1336380 . A . . END=1336449 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1336450 . G A, 696.64 . AS_QUALapprox=|704|0;AS_VarDP=32|29|0;BaseQRankSum=-1.341;DP=63;MQRankSum=0.000;QUALapprox=704;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=0.824;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:32,29,0:61:99:704,0,849,801,936,1737:15,17,15,14 +chrX 1336451 . T . . END=1336549 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,111,1274 +chrX 1336550 . G GA, 1043.03 . AS_QUALapprox=|1057|0;AS_VarDP=0|41|0;DP=52;QUALapprox=1057;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=41 GT:AD:DP:GQ:PL:SB 1/1:0,41,0:41:99:1057,123,0,1057,123,1057:0,0,17,24 +chrX 1336551 . A . . END=1336906 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,109,1725 +chrX 1336907 . T C, 2334.06 . AS_QUALapprox=|2348|0;AS_VarDP=0|69|0;DP=69;QUALapprox=2348;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=69 GT:AD:DP:GQ:PL:SB 1/1:0,69,0:69:99:2348,208,0,2348,208,2348:0,0,41,28 +chrX 1336908 . A . . END=1336937 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1336938 . C T, 973.64 . AS_QUALapprox=|981|0;AS_VarDP=23|36|0;BaseQRankSum=-1.543;DP=62;MQRankSum=0.000;QUALapprox=981;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=-1.368;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:23,36,0:59:99:981,0,601,1050,709,1759:16,7,24,12 +chrX 1336939 . C . . END=1337642 GT:DP:GQ:MIN_DP:PL 0/0:64:96:64:0,96,1330 +chrX 1337643 . C . . END=1337643 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,967 +chrX 1337644 . G . . END=1337650 GT:DP:GQ:MIN_DP:PL 0/0:40:95:40:0,95,1190 +chrX 1337651 . T . . END=1337651 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,804 +chrX 1337652 . A . . END=1337675 GT:DP:GQ:MIN_DP:PL 0/0:36:66:36:0,66,1017 +chrX 1337676 . G . . END=1337676 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,595 +chrX 1337677 . G . . END=1337764 GT:DP:GQ:MIN_DP:PL 0/0:33:43:33:0,43,902 +chrX 1337765 . C . . END=1337765 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,713 +chrX 1337766 . G . . END=1337863 GT:DP:GQ:MIN_DP:PL 0/0:47:32:43:0,32,1169 +chrX 1337864 . C T, 503.64 . AS_QUALapprox=|511|0;AS_VarDP=47|25|0;BaseQRankSum=0.740;DP=72;MQRankSum=1.534;QUALapprox=511;RAW_GT_COUNT=0,1,0;RAW_MQandDP=145747,72;ReadPosRankSum=-1.633;VarDP=72 GT:AD:DP:GQ:PL:SB 0/1:47,25,0:72:99:511,0,1123,652,1196,1848:21,26,14,11 +chrX 1337865 . A . . END=1337998 GT:DP:GQ:MIN_DP:PL 0/0:65:26:55:0,26,1115 +chrX 1337999 . C T, 491.64 . AS_QUALapprox=|499|0;AS_VarDP=25|19|0;BaseQRankSum=2.517;DP=46;MQRankSum=1.395;QUALapprox=499;RAW_GT_COUNT=0,1,0;RAW_MQandDP=114922,46;ReadPosRankSum=0.095;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:25,19,0:44:99:499,0,572,573,628,1201:9,16,13,6 +chrX 1338000 . A . . END=1338138 GT:DP:GQ:MIN_DP:PL 0/0:50:41:50:0,41,1038 +chrX 1338139 . G T, 266.64 . AS_QUALapprox=|274|0;AS_VarDP=25|13|0;BaseQRankSum=0.437;DP=41;MQRankSum=-0.255;QUALapprox=274;RAW_GT_COUNT=0,1,0;RAW_MQandDP=131579,41;ReadPosRankSum=1.354;VarDP=38 GT:AD:DP:GQ:PL:SB 0/1:25,13,0:38:99:274,0,600,347,639,987:12,13,5,8 +chrX 1338140 . A . . END=1338403 GT:DP:GQ:MIN_DP:PL 0/0:59:73:59:0,73,1105 +chrX 1338404 . C T, 830.64 . AS_QUALapprox=|838|0;AS_VarDP=24|31|0;BaseQRankSum=-0.114;DP=59;MQRankSum=1.951;QUALapprox=838;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198769,59;ReadPosRankSum=2.207;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:24,31,0:55:99:838,0,597,909,689,1599:15,9,22,9 +chrX 1338405 . G . . END=1338434 GT:DP:GQ:MIN_DP:PL 0/0:62:35:61:0,35,1623 +chrX 1338435 . T . . END=1338435 GT:DP:GQ:MIN_DP:PL 0/0:67:0:67:0,0,1623 +chrX 1338436 . A . . END=1338680 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 1338681 . G A, 914.64 . AS_QUALapprox=|922|0;AS_VarDP=27|33|0;BaseQRankSum=0.641;DP=63;MQRankSum=0.000;QUALapprox=922;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=1.457;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:27,33,0:60:99:922,0,717,1003,816,1819:13,14,13,20 +chrX 1338682 . G . . END=1338808 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,119,1800 +chrX 1338809 . G GT, 605.60 . AS_QUALapprox=|613|0;AS_VarDP=33|28|0;BaseQRankSum=0.826;DP=67;MQRankSum=-0.094;QUALapprox=613;RAW_GT_COUNT=0,1,0;RAW_MQandDP=239202,67;ReadPosRankSum=0.847;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:33,28,0:61:99:613,0,805,712,889,1601:17,16,13,15 +chrX 1338810 . T . . END=1338862 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 1338863 . G A, 886.64 . AS_QUALapprox=|894|0;AS_VarDP=33|33|0;BaseQRankSum=0.961;DP=68;MQRankSum=0.022;QUALapprox=894;RAW_GT_COUNT=0,1,0;RAW_MQandDP=240571,68;ReadPosRankSum=-0.930;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:33,33,0:66:99:894,0,864,993,963,1956:15,18,14,19 +chrX 1338864 . A . . END=1339114 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 1339115 . T C, 679.64 . AS_QUALapprox=|687|0;AS_VarDP=31|26|0;BaseQRankSum=1.263;DP=60;MQRankSum=0.000;QUALapprox=687;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=-1.956;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:31,26,0:57:99:687,0,827,781,904,1685:16,15,11,15 +chrX 1339116 . A . . END=1339372 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 1339373 . T C, 962.64 . AS_QUALapprox=|970|0;AS_VarDP=36|36|0;BaseQRankSum=-0.765;DP=76;MQRankSum=0.000;QUALapprox=970;RAW_GT_COUNT=0,1,0;RAW_MQandDP=273600,76;ReadPosRankSum=-0.377;VarDP=72 GT:AD:DP:GQ:PL:SB 0/1:36,36,0:72:99:970,0,1004,1078,1112,2190:17,19,12,24 +chrX 1339374 . A . . END=1339432 GT:DP:GQ:MIN_DP:PL 0/0:78:99:78:0,120,1800 +chrX 1339433 . G A, 832.64 . AS_QUALapprox=|840|0;AS_VarDP=45|34|0;BaseQRankSum=0.138;DP=81;MQRankSum=0.000;QUALapprox=840;RAW_GT_COUNT=0,1,0;RAW_MQandDP=291600,81;ReadPosRankSum=-0.371;VarDP=79 GT:AD:DP:GQ:PL:SB 0/1:45,34,0:79:99:840,0,1222,975,1322,2297:18,27,17,17 +chrX 1339434 . C . . END=1339518 GT:DP:GQ:MIN_DP:PL 0/0:78:99:78:0,120,1800 +chrX 1339519 . C T, 835.64 . AS_QUALapprox=|843|0;AS_VarDP=37|33|0;BaseQRankSum=0.569;DP=74;MQRankSum=0.000;QUALapprox=843;RAW_GT_COUNT=0,1,0;RAW_MQandDP=266400,74;ReadPosRankSum=1.400;VarDP=70 GT:AD:DP:GQ:PL:SB 0/1:37,33,0:70:99:843,0,936,953,1035,1988:15,22,15,18 +chrX 1339520 . G . . END=1340133 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,104,1592 +chrX 1340134 . G . . END=1340134 GT:DP:GQ:MIN_DP:PL 0/0:50:0:50:0,0,972 +chrX 1340135 . A . . END=1340706 GT:DP:GQ:MIN_DP:PL 0/0:63:49:63:0,49,1231 +chrX 1340707 . C T, 1768.06 . AS_QUALapprox=|1782|0;AS_VarDP=0|55|0;DP=59;QUALapprox=1782;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1782,165,0,1782,165,1782:0,0,27,28 +chrX 1340708 . G . . END=1340841 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1340842 . C T, 1990.06 . AS_QUALapprox=|2004|0;AS_VarDP=0|64|0;DP=70;QUALapprox=2004;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;VarDP=64 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:2004,191,0,2004,191,2004:0,0,34,30 +chrX 1340843 . G . . END=1341115 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,116,1683 +chrX 1341116 . A T, 1776.06 . AS_QUALapprox=|1790|0;AS_VarDP=0|55|0;DP=59;QUALapprox=1790;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1790,165,0,1790,165,1790:0,0,31,24 +chrX 1341117 . C . . END=1341214 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 1341215 . G A, 1965.06 . AS_QUALapprox=|1979|0;AS_VarDP=0|61|0;DP=62;QUALapprox=1979;RAW_GT_COUNT=0,0,1;RAW_MQandDP=220276,62;VarDP=61 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:1979,182,0,1979,182,1979:0,0,33,28 +chrX 1341216 . C . . END=1341254 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 1341255 . A G, 2873.06 . AS_QUALapprox=|2887|0;AS_VarDP=0|68|0;DP=69;QUALapprox=2887;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=68 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,68,0:68:99:0|1:1341255_A_G:2887,205,0,2887,205,2887:1341255:0,0,38,30 +chrX 1341256 . T . . END=1341268 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1341269 . C T, 2764.06 . AS_QUALapprox=|2778|0;AS_VarDP=0|64|0;DP=64;QUALapprox=2778;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=64 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,64,0:64:99:0|1:1341255_A_G:2778,193,0,2778,193,2778:1341255:0,0,34,30 +chrX 1341270 . A . . END=1341300 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 1341301 . GA G, 1640.03 . AS_QUALapprox=|1654|0;AS_VarDP=0|62|0;DP=78;QUALapprox=1654;RAW_GT_COUNT=0,0,1;RAW_MQandDP=280800,78;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:0,62,0:62:99:1654,186,0,1654,186,1654:0,0,29,33 +chrX 1341303 . A . . END=1341373 GT:DP:GQ:MIN_DP:PL 0/0:73:99:73:0,120,1800 +chrX 1341374 . C CAT, 1626.60 . AS_QUALapprox=|1634|0;AS_VarDP=40|43|0;BaseQRankSum=1.936;DP=84;MQRankSum=0.000;QUALapprox=1634;RAW_GT_COUNT=0,1,0;RAW_MQandDP=302400,84;ReadPosRankSum=-0.629;VarDP=83 GT:AD:DP:GQ:PL:SB 0/1:40,43,0:83:99:1634,0,1509,1754,1639,3393:23,17,19,24 +chrX 1341375 . G . . END=1341380 GT:DP:GQ:MIN_DP:PL 0/0:80:99:80:0,120,1800 +chrX 1341381 . GCA G, 3293.03 . AS_QUALapprox=|3307|0;AS_VarDP=0|79|0;DP=82;QUALapprox=3307;RAW_GT_COUNT=0,0,1;RAW_MQandDP=295200,82;VarDP=79 GT:AD:DP:GQ:PL:SB 1/1:0,79,0:79:99:3307,238,0,3307,238,3307:0,0,41,38 +chrX 1341384 . C . . END=1341543 GT:DP:GQ:MIN_DP:PL 0/0:81:53:81:0,53,1800 +chrX 1341544 . A ACT, 2990.03 . AS_QUALapprox=|3004|0;AS_VarDP=0|67|0;DP=67;QUALapprox=3004;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=67 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,67,0:67:99:0|1:1341544_A_ACT:3004,202,0,3004,202,3004:1341544:0,0,28,39 +chrX 1341545 . T . . END=1341545 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 1341546 . G C, 2990.06 . AS_QUALapprox=|3004|0;AS_VarDP=0|67|0;DP=67;QUALapprox=3004;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=67 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,67,0:67:99:0|1:1341544_A_ACT:3004,202,0,3004,202,3004:1341544:0,0,28,39 +chrX 1341547 . T . . END=1341547 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1341548 . G A, 2946.06 . AS_QUALapprox=|2960|0;AS_VarDP=0|66|0;DP=66;QUALapprox=2960;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=66 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,66,0:66:99:0|1:1341544_A_ACT:2960,199,0,2960,199,2960:1341544:0,0,28,38 +chrX 1341549 . C . . END=1341552 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1341553 . CATGT C, 2845.03 . AS_QUALapprox=|2859|0;AS_VarDP=0|64|0;DP=66;QUALapprox=2859;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=64 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,64,0:64:99:0|1:1341544_A_ACT:2859,193,0,2859,193,2859:1341544:0,0,28,36 +chrX 1341558 . G . . END=1341601 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 1341602 . G A, 2227.06 . AS_QUALapprox=|2241|0;AS_VarDP=0|70|0;DP=72;QUALapprox=2241;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;VarDP=70 GT:AD:DP:GQ:PL:SB 1/1:0,70,0:70:99:2241,209,0,2241,209,2241:0,0,35,35 +chrX 1341603 . C . . END=1341660 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,120,1800 +chrX 1341661 . A G, 2381.06 . AS_QUALapprox=|2395|0;AS_VarDP=0|76|0;DP=76;QUALapprox=2395;RAW_GT_COUNT=0,0,1;RAW_MQandDP=273600,76;VarDP=76 GT:AD:DP:GQ:PL:SB 1/1:0,76,0:76:99:2395,227,0,2395,227,2395:0,0,36,40 +chrX 1341662 . T . . END=1341723 GT:DP:GQ:MIN_DP:PL 0/0:73:99:73:0,120,1800 +chrX 1341724 . G C, 2402.06 . AS_QUALapprox=|2416|0;AS_VarDP=0|72|0;DP=74;QUALapprox=2416;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;VarDP=72 GT:AD:DP:GQ:PL:SB 1/1:0,72,0:72:99:2416,216,0,2416,216,2416:0,0,32,40 +chrX 1341725 . C . . END=1341846 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 1341847 . A G, 1893.06 . AS_QUALapprox=|1907|0;AS_VarDP=0|59|0;DP=59;QUALapprox=1907;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1907,176,0,1907,176,1907:0,0,25,34 +chrX 1341848 . A . . END=1341934 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1341935 . C T, 1641.06 . AS_QUALapprox=|1655|0;AS_VarDP=0|51|0;DP=52;QUALapprox=1655;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1655,153,0,1655,153,1655:0,0,29,22 +chrX 1341936 . A . . END=1342024 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1342025 . C T, 1777.06 . AS_QUALapprox=|1791|0;AS_VarDP=1|58|0;BaseQRankSum=2.071;DP=62;MQRankSum=0.000;QUALapprox=1791;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;ReadPosRankSum=1.116;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:1,58,0:59:99:1791,167,0,1794,174,1800:0,1,25,33 +chrX 1342026 . G . . END=1342098 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 1342099 . C T, 1738.06 . AS_QUALapprox=|1752|0;AS_VarDP=0|53|0;DP=55;QUALapprox=1752;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1752,159,0,1752,159,1752:0,0,22,31 +chrX 1342100 . G . . END=1342165 GT:DP:GQ:MIN_DP:PL 0/0:47:97:47:0,97,1400 +chrX 1342166 . C G, 1560.06 . AS_QUALapprox=|1574|0;AS_VarDP=0|47|0;DP=49;QUALapprox=1574;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1574,141,0,1574,141,1574:0,0,25,22 +chrX 1342167 . T . . END=1342190 GT:DP:GQ:MIN_DP:PL 0/0:42:92:42:0,92,1340 +chrX 1342191 . G A, 1473.06 . AS_QUALapprox=|1487|0;AS_VarDP=0|44|0;DP=46;QUALapprox=1487;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;VarDP=44 GT:AD:DP:GQ:PL:SB 1/1:0,44,0:44:99:1487,132,0,1487,132,1487:0,0,24,20 +chrX 1342192 . G . . END=1342322 GT:DP:GQ:MIN_DP:PL 0/0:53:80:53:0,80,1444 +chrX 1342323 . A G, 1763.06 . AS_QUALapprox=|1777|0;AS_VarDP=0|54|0;DP=54;QUALapprox=1777;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:1777,161,0,1777,161,1777:0,0,26,28 +chrX 1342324 . C . . END=1342558 GT:DP:GQ:MIN_DP:PL 0/0:40:45:36:0,45,917 +chrX 1342559 . C CT, 118.60 . AS_QUALapprox=|126|0;AS_VarDP=12|9|0;BaseQRankSum=0.153;DP=39;MQRankSum=-1.058;QUALapprox=126;RAW_GT_COUNT=0,1,0;RAW_MQandDP=138400,39;ReadPosRankSum=-0.391;VarDP=21 GT:AD:DP:GQ:PL:SB 0/1:12,9,0:21:99:126,0,182,161,209,370:4,8,5,4 +chrX 1342560 . T . . END=1342577 GT:DP:GQ:MIN_DP:PL 0/0:36:57:36:0,57,855 +chrX 1342578 . G T, 70.64 . AS_QUALapprox=|78|0;AS_VarDP=20|7|0;BaseQRankSum=-2.088;DP=38;MQRankSum=0.676;QUALapprox=78;RAW_GT_COUNT=0,1,0;RAW_MQandDP=134800,38;ReadPosRankSum=1.356;VarDP=27 GT:AD:DP:GQ:PL:SB 0/1:20,7,0:27:78:78,0,563,138,583,721:5,15,7,0 +chrX 1342579 . A . . END=1342580 GT:DP:GQ:MIN_DP:PL 0/0:36:5:36:0,5,884 +chrX 1342581 . A . . END=1342583 GT:DP:GQ:MIN_DP:PL 0/0:38:35:38:0,35,923 +chrX 1342584 . G . . END=1342584 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,870 +chrX 1342585 . A . . END=1342589 GT:DP:GQ:MIN_DP:PL 0/0:40:22:37:0,22,948 +chrX 1342590 . C . . END=1342591 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,989 +chrX 1342592 . T . . END=1342593 GT:DP:GQ:MIN_DP:PL 0/0:42:87:42:0,87,1305 +chrX 1342594 . C . . END=1342594 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,838 +chrX 1342595 . T . . END=1342595 GT:DP:GQ:MIN_DP:PL 0/0:39:82:39:0,82,1226 +chrX 1342596 . G . . END=1342596 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,933 +chrX 1342597 . G . . END=1342598 GT:DP:GQ:MIN_DP:PL 0/0:32:32:32:0,32,884 +chrX 1342599 . C . . END=1342599 GT:DP:GQ:MIN_DP:PL 0/0:31:19:31:0,19,788 +chrX 1342600 . G . . END=1342725 GT:DP:GQ:MIN_DP:PL 0/0:38:44:38:0,44,958 +chrX 1342726 . A G, 655.64 . AS_QUALapprox=|663|0;AS_VarDP=21|26|0;BaseQRankSum=0.239;DP=49;MQRankSum=0.000;QUALapprox=663;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=0.332;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:21,26,0:47:99:663,0,479,725,557,1283:8,13,10,16 +chrX 1342727 . A . . END=1342892 GT:DP:GQ:MIN_DP:PL 0/0:51:85:51:0,85,1212 +chrX 1342893 . G A, 1529.06 . AS_QUALapprox=|1543|0;AS_VarDP=0|47|0;DP=47;QUALapprox=1543;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1543,141,0,1543,141,1543:0,0,28,19 +chrX 1342894 . G . . END=1342943 GT:DP:GQ:MIN_DP:PL 0/0:45:92:45:0,92,1209 +chrX 1342944 . G A, 792.64 . AS_QUALapprox=|800|0;AS_VarDP=16|28|0;BaseQRankSum=-0.144;DP=47;MQRankSum=-0.709;QUALapprox=800;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169081,47;ReadPosRankSum=0.403;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:16,28,0:44:99:800,0,402,848,486,1334:6,10,18,10 +chrX 1342945 . G . . END=1343509 GT:DP:GQ:MIN_DP:PL 0/0:53:53:53:0,53,982 +chrX 1343510 . CA C, 1697.03 . AS_QUALapprox=|1711|0;AS_VarDP=0|55|0;DP=60;QUALapprox=1711;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1711,165,0,1711,165,1711:0,0,30,25 +chrX 1343512 . A . . END=1343640 GT:DP:GQ:MIN_DP:PL 0/0:43:63:43:0,63,982 +chrX 1343641 . T . . END=1343641 GT:DP:GQ:MIN_DP:PL 0/0:31:19:31:0,19,849 +chrX 1343642 . G . . END=1343663 GT:DP:GQ:MIN_DP:PL 0/0:33:31:31:0,31,658 +chrX 1343664 . C . . END=1343665 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,702 +chrX 1343666 . C CA, 225.67 . AS_QUALapprox=|233|0;AS_VarDP=3|15|0;BaseQRankSum=0.250;DP=38;MQRankSum=-0.298;QUALapprox=233;RAW_GT_COUNT=0,1,0;RAW_MQandDP=132800,38;ReadPosRankSum=0.594;VarDP=18 GT:AD:DP:GQ:PL:SB 0/1:3,15,0:18:8:233,0,8,242,51,294:2,1,2,13 +chrX 1343667 . A . . END=1343685 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,114,1608 +chrX 1343686 . G . . END=1343687 GT:DP:GQ:MIN_DP:PL 0/0:49:5:49:0,5,1320 +chrX 1343688 . A . . END=1343774 GT:DP:GQ:MIN_DP:PL 0/0:48:48:48:0,48,1324 +chrX 1343775 . CT C, 308.60 . AS_QUALapprox=|316|0;AS_VarDP=19|16|0;BaseQRankSum=1.018;DP=43;MQRankSum=-1.032;QUALapprox=316;RAW_GT_COUNT=0,1,0;RAW_MQandDP=152258,43;ReadPosRankSum=1.019;VarDP=35 GT:AD:DP:GQ:PL:SB 0/1:19,16,0:35:99:316,0,387,373,435,808:12,7,8,8 +chrX 1343777 . T . . END=1343856 GT:DP:GQ:MIN_DP:PL 0/0:36:39:31:0,39,880 +chrX 1343857 . A G, 406.64 . AS_QUALapprox=|414|0;AS_VarDP=20|17|0;BaseQRankSum=-0.375;DP=42;MQRankSum=0.000;QUALapprox=414;RAW_GT_COUNT=0,1,0;RAW_MQandDP=150849,42;ReadPosRankSum=-0.519;VarDP=37 GT:AD:DP:GQ:PL:SB 0/1:20,17,0:37:99:414,0,534,474,585,1059:11,9,8,9 +chrX 1343858 . C . . END=1344083 GT:DP:GQ:MIN_DP:PL 0/0:56:86:56:0,86,1111 +chrX 1344084 . A G, 583.64 . AS_QUALapprox=|591|0;AS_VarDP=30|24|0;BaseQRankSum=-1.398;DP=57;MQRankSum=0.000;QUALapprox=591;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=0.418;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:30,24,0:54:99:591,0,1126,682,1198,1880:15,15,14,10 +chrX 1344085 . C . . END=1344096 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 1344097 . TTA T, 1047.60 . AS_QUALapprox=|1055|0;AS_VarDP=22|27|0;BaseQRankSum=0.330;DP=51;MQRankSum=0.000;QUALapprox=1055;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-0.191;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:22,27,0:49:99:1055,0,832,1122,913,2035:13,9,16,11 +chrX 1344100 . T . . END=1344130 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,120,1800 +chrX 1344131 . G C, 1678.06 . AS_QUALapprox=|1692|0;AS_VarDP=0|51|0;DP=53;QUALapprox=1692;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1692,153,0,1692,153,1692:0,0,25,26 +chrX 1344132 . T . . END=1344656 GT:DP:GQ:MIN_DP:PL 0/0:59:72:59:0,72,1156 +chrX 1344657 . T C, 585.64 . AS_QUALapprox=|593|0;AS_VarDP=24|23|0;BaseQRankSum=0.188;DP=47;MQRankSum=0.553;QUALapprox=593;RAW_GT_COUNT=0,1,0;RAW_MQandDP=164001,47;ReadPosRankSum=0.969;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:24,23,0:47:99:593,0,632,666,701,1366:11,13,10,13 +chrX 1344658 . A . . END=1344877 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,101,1433 +chrX 1344878 . G C, 719.64 . AS_QUALapprox=|727|0;AS_VarDP=20|27|0;BaseQRankSum=-0.880;DP=50;MQRankSum=0.000;QUALapprox=727;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=0.678;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:20,27,0:47:99:727,0,524,787,605,1392:11,9,14,13 +chrX 1344879 . T . . END=1345005 GT:DP:GQ:MIN_DP:PL 0/0:53:83:53:0,83,1394 +chrX 1345006 . CA C, 1254.03 . AS_QUALapprox=|1268|0;AS_VarDP=0|48|0;DP=55;QUALapprox=1268;RAW_GT_COUNT=0,0,1;RAW_MQandDP=191877,55;VarDP=48 GT:AD:DP:GQ:PL:SB 1/1:0,48,0:48:99:1268,144,0,1268,144,1268:0,0,21,27 +chrX 1345008 . A . . END=1345189 GT:DP:GQ:MIN_DP:PL 0/0:57:74:57:0,74,1478 +chrX 1345190 . T . . END=1345190 GT:DP:GQ:MIN_DP:PL 0/0:58:1:58:0,1,1438 +chrX 1345191 . A . . END=1345232 GT:DP:GQ:MIN_DP:PL 0/0:50:86:50:0,86,1400 +chrX 1345233 . C CAA, 405.60 . AS_QUALapprox=|413|0;AS_VarDP=27|15|0;BaseQRankSum=-0.828;DP=49;MQRankSum=-1.292;QUALapprox=413;RAW_GT_COUNT=0,1,0;RAW_MQandDP=174169,49;ReadPosRankSum=1.326;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:27,15,0:42:99:413,0,856,495,901,1396:17,10,11,4 +chrX 1345234 . A . . END=1345690 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,99,1697 +chrX 1345691 . T C, 559.64 . AS_QUALapprox=|567|0;AS_VarDP=37|22|0;BaseQRankSum=1.652;DP=59;MQRankSum=-2.264;QUALapprox=567;RAW_GT_COUNT=0,1,0;RAW_MQandDP=210242,59;ReadPosRankSum=0.416;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:37,22,0:59:99:567,0,1008,679,1075,1753:17,20,13,9 +chrX 1345692 . G . . END=1345770 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 1345771 . C T, 645.64 . AS_QUALapprox=|653|0;AS_VarDP=48|27|0;BaseQRankSum=1.226;DP=76;MQRankSum=-1.879;QUALapprox=653;RAW_GT_COUNT=0,1,0;RAW_MQandDP=271906,76;ReadPosRankSum=0.486;VarDP=75 GT:AD:DP:GQ:PL:SB 0/1:48,27,0:75:99:653,0,1257,797,1339,2135:16,32,15,12 +chrX 1345772 . G . . END=1345927 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 1345928 . G C, 784.64 . AS_QUALapprox=|792|0;AS_VarDP=27|30|0;BaseQRankSum=-1.094;DP=61;MQRankSum=0.000;QUALapprox=792;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=0.656;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:27,30,0:57:99:792,0,748,873,837,1710:12,15,16,14 +chrX 1345929 . G . . END=1346294 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1346295 . T C, 453.64 . AS_QUALapprox=|461|0;AS_VarDP=36|22|0;BaseQRankSum=-2.722;DP=63;MQRankSum=-1.244;QUALapprox=461;RAW_GT_COUNT=0,1,0;RAW_MQandDP=225409,63;ReadPosRankSum=-0.617;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:36,22,0:58:99:461,0,1028,569,1093,1662:21,15,11,11 +chrX 1346296 . G . . END=1346363 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1346364 . G A, 826.64 . AS_QUALapprox=|834|0;AS_VarDP=37|23|0;BaseQRankSum=1.520;DP=61;MQRankSum=-1.047;QUALapprox=834;RAW_GT_COUNT=0,1,0;RAW_MQandDP=214913,61;ReadPosRankSum=1.179;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:37,23,0:60:99:0|1:1346364_G_A:834,0,1432,945,1501,2447:1346364:22,15,9,14 +chrX 1346365 . G . . END=1346370 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 1346371 . A G, 825.64 . AS_QUALapprox=|833|0;AS_VarDP=34|23|0;BaseQRankSum=0.137;DP=59;MQRankSum=-0.967;QUALapprox=833;RAW_GT_COUNT=0,1,0;RAW_MQandDP=207713,59;ReadPosRankSum=1.133;VarDP=57 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:34,23,0:57:99:0|1:1346364_G_A:833,0,1348,935,1417,2353:1346364:20,14,9,14 +chrX 1346372 . G . . END=1346643 GT:DP:GQ:MIN_DP:PL 0/0:59:79:59:0,79,1279 +chrX 1346644 . A G, 562.64 . AS_QUALapprox=|570|0;AS_VarDP=33|23|0;BaseQRankSum=-0.590;DP=57;MQRankSum=0.000;QUALapprox=570;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=1.558;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:33,23,0:56:99:570,0,939,669,1008,1677:14,19,11,12 +chrX 1346645 . G . . END=1347975 GT:DP:GQ:MIN_DP:PL 0/0:64:51:64:0,51,1235 +chrX 1347976 . A . . END=1347976 GT:DP:GQ:MIN_DP:PL 0/0:43:16:43:0,16,1076 +chrX 1347977 . C . . END=1347981 GT:DP:GQ:MIN_DP:PL 0/0:43:94:43:0,94,1254 +chrX 1347982 . A . . END=1348035 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,490 +chrX 1348036 . C CA, 140.60 . AS_QUALapprox=|148|0;AS_VarDP=15|9|0;BaseQRankSum=-0.211;DP=36;MQRankSum=-0.249;QUALapprox=148;RAW_GT_COUNT=0,1,0;RAW_MQandDP=120773,36;ReadPosRankSum=-0.239;VarDP=24 GT:AD:DP:GQ:PL:SB 0/1:15,9,0:24:99:148,0,307,241,397,948:10,5,1,8 +chrX 1348037 . A . . END=1348067 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,719 +chrX 1348068 . C T, 1053.06 . AS_QUALapprox=|1067|0;AS_VarDP=1|33|0;BaseQRankSum=2.649;DP=41;MQRankSum=0.000;QUALapprox=1067;RAW_GT_COUNT=0,0,1;RAW_MQandDP=142609,41;ReadPosRankSum=-1.530;VarDP=34 GT:AD:DP:GQ:PL:SB 1/1:1,33,0:34:91:1067,91,0,1144,111,1411:0,1,15,18 +chrX 1348069 . G . . END=1348105 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,1041 +chrX 1348106 . G . . END=1348325 GT:DP:GQ:MIN_DP:PL 0/0:53:25:48:0,25,1300 +chrX 1348326 . G C, 722.64 . AS_QUALapprox=|730|0;AS_VarDP=28|28|0;BaseQRankSum=-0.321;DP=59;MQRankSum=0.000;QUALapprox=730;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208666,59;ReadPosRankSum=0.713;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:28,28,0:56:99:730,0,750,814,834,1648:8,20,16,12 +chrX 1348327 . T . . END=1348396 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1348397 . G C, 2010.06 . AS_QUALapprox=|2024|0;AS_VarDP=1|63|0;BaseQRankSum=-0.466;DP=67;MQRankSum=0.000;QUALapprox=2024;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;ReadPosRankSum=-1.354;VarDP=64 GT:AD:DP:GQ:PL:SB 1/1:1,63,0:64:99:2024,158,0,2027,189,2058:0,1,35,28 +chrX 1348398 . T . . END=1348691 GT:DP:GQ:MIN_DP:PL 0/0:51:27:42:0,27,1081 +chrX 1348692 . T C,TTCTC, 1679.06 . AS_QUALapprox=|1389|1094|0;AS_VarDP=0|15|8|0;DP=41;QUALapprox=1696;RAW_GT_COUNT=0,0,1;RAW_MQandDP=143541,41;VarDP=23 GT:AD:DP:GQ:PL:SB 1/2:0,15,8,0:23:99:1696,376,307,655,0,602,1369,391,671,1339:0,0,8,15 +chrX 1348693 . T . . END=1348705 GT:DP:GQ:MIN_DP:PL 0/0:41:86:41:0,86,1146 +chrX 1348706 . G GTTTC, 2080.03 . AS_QUALapprox=|2094|0;AS_VarDP=0|47|0;DP=47;QUALapprox=2094;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165141,47;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,47,0:47:99:0|1:1348706_G_GTTTC:2094,141,0,2094,141,2094:1348706:0,0,17,30 +chrX 1348707 . T . . END=1348731 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,102,1140 +chrX 1348732 . T TTC, 1728.03 . AS_QUALapprox=|1742|0;AS_VarDP=0|41|0;DP=41;QUALapprox=1742;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147600,41;VarDP=41 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,41,0:41:99:0|1:1348706_G_GTTTC:1742,122,0,1742,122,1742:1348706:0,0,15,26 +chrX 1348733 . T . . END=1348884 GT:DP:GQ:MIN_DP:PL 0/0:39:40:36:0,40,839 +chrX 1348885 . T TTTC, 1426.03 . AS_QUALapprox=|1440|0;AS_VarDP=0|32|0;DP=34;QUALapprox=1440;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=32 GT:AD:DP:GQ:PL:SB 1/1:0,32,0:32:96:1440,96,0,1440,96,1440:0,0,12,20 +chrX 1348886 . T . . END=1348891 GT:DP:GQ:MIN_DP:PL 0/0:36:39:36:0,39,1103 +chrX 1348892 . T . . END=1348892 GT:DP:GQ:MIN_DP:PL 0/0:38:10:38:0,10,1062 +chrX 1348893 . T . . END=1349186 GT:DP:GQ:MIN_DP:PL 0/0:46:42:46:0,42,796 +chrX 1349187 . C CT, 384.60 . AS_QUALapprox=|392|0;AS_VarDP=15|19|0;BaseQRankSum=-0.352;DP=41;MQRankSum=0.000;QUALapprox=392;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147600,41;ReadPosRankSum=-0.104;VarDP=34 GT:AD:DP:GQ:PL:SB 0/1:15,19,0:34:99:392,0,291,437,348,785:10,5,8,11 +chrX 1349188 . T . . END=1349243 GT:DP:GQ:MIN_DP:PL 0/0:37:73:37:0,73,1053 +chrX 1349244 . C T, 553.64 . AS_QUALapprox=|561|0;AS_VarDP=18|20|0;BaseQRankSum=1.085;DP=41;MQRankSum=0.000;QUALapprox=561;RAW_GT_COUNT=0,1,0;RAW_MQandDP=145764,41;ReadPosRankSum=-0.234;VarDP=38 GT:AD:DP:GQ:PL:SB 0/1:18,20,0:38:99:561,0,456,615,516,1131:8,10,7,13 +chrX 1349245 . G . . END=1349356 GT:DP:GQ:MIN_DP:PL 0/0:52:77:52:0,77,1260 +chrX 1349357 . T C, 824.64 . AS_QUALapprox=|832|0;AS_VarDP=30|30|0;BaseQRankSum=1.931;DP=61;MQRankSum=0.000;QUALapprox=832;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-0.407;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:30,30,0:60:99:832,0,771,922,861,1783:14,16,21,9 +chrX 1349358 . T . . END=1349625 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,116,1663 +chrX 1349626 . T G, 1061.64 . AS_QUALapprox=|1069|0;AS_VarDP=36|42|0;BaseQRankSum=-3.276;DP=82;MQRankSum=0.000;QUALapprox=1069;RAW_GT_COUNT=0,1,0;RAW_MQandDP=295200,82;ReadPosRankSum=-1.439;VarDP=78 GT:AD:DP:GQ:PL:SB 0/1:36,42,0:78:99:1069,0,1018,1178,1143,2321:16,20,16,26 +chrX 1349627 . A . . END=1350199 GT:DP:GQ:MIN_DP:PL 0/0:67:80:67:0,80,1350 +chrX 1350200 . A G, 1633.64 . AS_QUALapprox=|1641|0;AS_VarDP=36|45|0;BaseQRankSum=0.993;DP=82;MQRankSum=-0.182;QUALapprox=1641;RAW_GT_COUNT=0,1,0;RAW_MQandDP=283800,82;ReadPosRankSum=-1.379;VarDP=81 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:36,45,0:81:99:0|1:1350200_A_G:1641,0,1294,1750,1429,3178:1350200:24,12,31,14 +chrX 1350201 . T . . END=1350224 GT:DP:GQ:MIN_DP:PL 0/0:78:99:78:0,120,1800 +chrX 1350225 . C T, 1642.64 . AS_QUALapprox=|1650|0;AS_VarDP=33|45|0;BaseQRankSum=-2.310;DP=79;MQRankSum=-0.327;QUALapprox=1650;RAW_GT_COUNT=0,1,0;RAW_MQandDP=266777,79;ReadPosRankSum=-2.063;VarDP=78 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:33,45,0:78:99:0|1:1350200_A_G:1650,0,1210,1750,1345,3095:1350200:21,12,28,17 +chrX 1350226 . G . . END=1350468 GT:DP:GQ:MIN_DP:PL 0/0:79:47:79:0,47,1613 +chrX 1350469 . G . . END=1350469 GT:DP:GQ:MIN_DP:PL 0/0:69:0:69:0,0,164 +chrX 1350470 . T . . END=1350512 GT:DP:GQ:MIN_DP:PL 0/0:74:99:74:0,120,1800 +chrX 1350513 . C . . END=1350513 GT:DP:GQ:MIN_DP:PL 0/0:71:0:71:0,0,0 +chrX 1350514 . G . . END=1350588 GT:DP:GQ:MIN_DP:PL 0/0:63:84:63:0,84,1260 +chrX 1350589 . A . . END=1350589 GT:DP:GQ:MIN_DP:PL 0/0:65:0:65:0,0,451 +chrX 1350590 . A . . END=1350648 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,103,1782 +chrX 1350649 . C . . END=1350649 GT:DP:GQ:MIN_DP:PL 0/0:60:0:60:0,0,297 +chrX 1350650 . C . . END=1350671 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1350672 . T . . END=1350672 GT:DP:GQ:MIN_DP:PL 0/0:57:0:57:0,0,302 +chrX 1350673 . G . . END=1350681 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1350682 . G . . END=1350682 GT:DP:GQ:MIN_DP:PL 0/0:61:0:61:0,0,312 +chrX 1350683 . C . . END=1350776 GT:DP:GQ:MIN_DP:PL 0/0:59:96:59:0,96,1592 +chrX 1350777 . C T, 585.64 . AS_QUALapprox=|593|0;AS_VarDP=27|22|0;BaseQRankSum=-1.342;DP=50;MQRankSum=-1.067;QUALapprox=593;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176626,50;ReadPosRankSum=-0.020;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,22,0:49:99:0|1:1350777_C_T:593,0,736,674,802,1476:1350777:13,14,12,10 +chrX 1350778 . A . . END=1350889 GT:DP:GQ:MIN_DP:PL 0/0:50:52:48:0,52,1684 +chrX 1350890 . A AGACAAAC, 923.60 . AS_QUALapprox=|931|0;AS_VarDP=36|25|0;BaseQRankSum=1.220;DP=65;MQRankSum=0.000;QUALapprox=931;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=0.264;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:36,25,0:61:99:931,0,1427,1040,1503,2543:14,22,12,13 +chrX 1350891 . A . . END=1351000 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 1351001 . A G, 672.64 . AS_QUALapprox=|680|0;AS_VarDP=28|25|0;BaseQRankSum=2.267;DP=57;MQRankSum=0.000;QUALapprox=680;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-0.116;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:28,25,0:53:99:680,0,687,764,763,1526:13,15,9,16 +chrX 1351002 . T . . END=1351078 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,111,1445 +chrX 1351079 . T C, 664.64 . AS_QUALapprox=|672|0;AS_VarDP=30|27|0;BaseQRankSum=-0.595;DP=61;MQRankSum=0.000;QUALapprox=672;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-0.424;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:30,27,0:57:99:672,0,801,762,882,1644:13,17,13,14 +chrX 1351080 . G . . END=1351137 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 1351138 . T C, 491.64 . AS_QUALapprox=|499|0;AS_VarDP=32|23|0;BaseQRankSum=-2.898;DP=58;MQRankSum=0.000;QUALapprox=499;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=0.068;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:32,23,0:55:99:499,0,898,595,966,1561:14,18,10,13 +chrX 1351139 . G . . END=1351181 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 1351182 . A G, 810.64 . AS_QUALapprox=|818|0;AS_VarDP=30|30|0;BaseQRankSum=0.398;DP=61;MQRankSum=0.000;QUALapprox=818;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=1.035;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:30,30,0:60:99:818,0,807,908,897,1805:13,17,16,14 +chrX 1351183 . G . . END=1351338 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,113,1722 +chrX 1351339 . T TA, 1032.60 . AS_QUALapprox=|1040|0;AS_VarDP=34|32|0;BaseQRankSum=-1.456;DP=72;MQRankSum=0.000;QUALapprox=1040;RAW_GT_COUNT=0,1,0;RAW_MQandDP=259200,72;ReadPosRankSum=0.706;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:34,32,0:66:99:1040,0,1033,1143,1130,2272:17,17,17,15 +chrX 1351340 . T . . END=1351488 GT:DP:GQ:MIN_DP:PL 0/0:62:55:62:0,55,1432 +chrX 1351489 . C . . END=1351489 GT:DP:GQ:MIN_DP:PL 0/0:54:0:54:0,0,1348 +chrX 1351490 . G . . END=1351666 GT:DP:GQ:MIN_DP:PL 0/0:54:55:54:0,55,1348 +chrX 1351667 . C T, 613.64 . AS_QUALapprox=|621|0;AS_VarDP=26|24|0;BaseQRankSum=2.248;DP=53;MQRankSum=-0.021;QUALapprox=621;RAW_GT_COUNT=0,1,0;RAW_MQandDP=186978,53;ReadPosRankSum=1.923;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:26,24,0:50:99:621,0,590,697,662,1359:15,11,12,12 +chrX 1351668 . G . . END=1351703 GT:DP:GQ:MIN_DP:PL 0/0:55:62:55:0,62,1395 +chrX 1351704 . A . . END=1351704 GT:DP:GQ:MIN_DP:PL 0/0:57:18:57:0,18,1524 +chrX 1351705 . T . . END=1351842 GT:DP:GQ:MIN_DP:PL 0/0:63:90:63:0,90,1713 +chrX 1351843 . T . . END=1351843 GT:DP:GQ:MIN_DP:PL 0/0:64:0:64:0,0,1688 +chrX 1351844 . G . . END=1351908 GT:DP:GQ:MIN_DP:PL 0/0:63:84:63:0,84,1591 +chrX 1351909 . C T, 292.64 . AS_QUALapprox=|300|0;AS_VarDP=35|14|0;BaseQRankSum=0.521;DP=52;MQRankSum=-1.536;QUALapprox=300;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180891,52;ReadPosRankSum=-1.173;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:35,14,0:49:99:300,0,969,405,1011,1416:17,18,5,9 +chrX 1351910 . G . . END=1352043 GT:DP:GQ:MIN_DP:PL 0/0:55:36:51:0,36,1165 +chrX 1352044 . C T, 915.64 . AS_QUALapprox=|923|0;AS_VarDP=25|33|0;BaseQRankSum=0.100;DP=58;MQRankSum=-0.836;QUALapprox=923;RAW_GT_COUNT=0,1,0;RAW_MQandDP=206800,58;ReadPosRankSum=1.461;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:25,33,0:58:99:923,0,654,998,753,1751:13,12,19,14 +chrX 1352045 . G . . END=1352244 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 1352245 . G T, 795.64 . AS_QUALapprox=|803|0;AS_VarDP=30|30|0;BaseQRankSum=0.953;DP=60;MQRankSum=0.000;QUALapprox=803;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=1.494;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:30,30,0:60:99:803,0,757,893,847,1740:16,14,12,18 +chrX 1352246 . T . . END=1352648 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 1352649 . C G, 939.64 . AS_QUALapprox=|947|0;AS_VarDP=29|36|0;BaseQRankSum=-1.113;DP=68;MQRankSum=0.000;QUALapprox=947;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=-0.898;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:29,36,0:65:99:947,0,754,1034,861,1895:14,15,19,17 +chrX 1352650 . G . . END=1352723 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1352724 . C T, 1593.64 . AS_QUALapprox=|1601|0;AS_VarDP=30|41|0;BaseQRankSum=-0.117;DP=71;MQRankSum=0.000;QUALapprox=1601;RAW_GT_COUNT=0,1,0;RAW_MQandDP=255600,71;ReadPosRankSum=0.525;VarDP=71 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:30,41,0:71:99:0|1:1352724_C_T:1601,0,1115,1691,1238,2929:1352724:17,13,21,20 +chrX 1352725 . G . . END=1352730 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 1352731 . T G, 1558.64 . AS_QUALapprox=|1566|0;AS_VarDP=31|40|0;BaseQRankSum=-0.570;DP=73;MQRankSum=0.000;QUALapprox=1566;RAW_GT_COUNT=0,1,0;RAW_MQandDP=262800,73;ReadPosRankSum=0.911;VarDP=71 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:31,40,0:71:99:0|1:1352724_C_T:1566,0,1149,1659,1270,2929:1352724:17,14,21,19 +chrX 1352732 . A . . END=1352820 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 1352821 . C T, 928.64 . AS_QUALapprox=|936|0;AS_VarDP=29|30|0;BaseQRankSum=0.075;DP=59;MQRankSum=0.000;QUALapprox=936;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-0.606;VarDP=59 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,30,0:59:99:0|1:1352821_C_T:936,0,846,1023,932,1955:1352821:14,15,16,14 +chrX 1352822 . C . . END=1352879 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 1352880 . AATCCCCCATGATGGGTTTCATCATGAGTCATAGAACCCCCTATCATGGATTCCATCATGGGTCATGGGAACCCCCATCATGGGTCCCATCATGGTTCATAGG A, 664.60 . AS_QUALapprox=|672|0;AS_VarDP=48|24|0;BaseQRankSum=1.362;DP=72;MQRankSum=-1.259;QUALapprox=672;RAW_GT_COUNT=0,1,0;RAW_MQandDP=251595,72;ReadPosRankSum=-0.233;VarDP=72 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:48,24,0:72:99:0|1:1352821_C_T:672,0,1845,816,1917,2733:1352821:19,29,13,11 +chrX 1352983 . A . . END=1353219 GT:DP:GQ:MIN_DP:PL 0/0:57:34:49:0,34,1031 +chrX 1353220 . A . . END=1353220 GT:DP:GQ:MIN_DP:PL 0/0:55:0:55:0,0,1375 +chrX 1353221 . G . . END=1353223 GT:DP:GQ:MIN_DP:PL 0/0:52:84:52:0,84,1443 +chrX 1353224 . C . . END=1353224 GT:DP:GQ:MIN_DP:PL 0/0:55:0:55:0,0,1424 +chrX 1353225 . C . . END=1353228 GT:DP:GQ:MIN_DP:PL 0/0:55:23:54:0,23,1459 +chrX 1353229 . C . . END=1353229 GT:DP:GQ:MIN_DP:PL 0/0:55:1:55:0,1,1484 +chrX 1353230 . C . . END=1353262 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,118,1613 +chrX 1353263 . T TCATCATGGGTTCCACCATGAGTCATGGGATCCCC, 884.60 . AS_QUALapprox=|892|0;AS_VarDP=24|27|0;BaseQRankSum=2.003;DP=53;MQRankSum=-0.904;QUALapprox=892;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190449,53;ReadPosRankSum=-2.467;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:24,27,0:51:99:892,0,802,964,882,1846:10,14,16,11 +chrX 1353264 . T . . END=1353325 GT:DP:GQ:MIN_DP:PL 0/0:42:79:42:0,79,1147 +chrX 1353326 . AC A, 466.60 . AS_QUALapprox=|474|0;AS_VarDP=18|20|0;BaseQRankSum=0.021;DP=46;MQRankSum=-1.657;QUALapprox=474;RAW_GT_COUNT=0,1,0;RAW_MQandDP=161408,46;ReadPosRankSum=0.717;VarDP=38 GT:AD:DP:GQ:PL:SB 0/1:18,20,0:38:99:474,0,449,528,507,1036:10,8,12,8 +chrX 1353328 . C . . END=1353332 GT:DP:GQ:MIN_DP:PL 0/0:53:65:53:0,65,1563 +chrX 1353333 . C . . END=1353336 GT:DP:GQ:MIN_DP:PL 0/0:53:0:53:0,0,1365 +chrX 1353337 . A . . END=1353337 GT:DP:GQ:MIN_DP:PL 0/0:52:27:52:0,27,1510 +chrX 1353338 . T . . END=1353338 GT:DP:GQ:MIN_DP:PL 0/0:51:14:51:0,14,1434 +chrX 1353339 . G . . END=1353340 GT:DP:GQ:MIN_DP:PL 0/0:51:91:51:0,91,1579 +chrX 1353341 . G . . END=1353341 GT:DP:GQ:MIN_DP:PL 0/0:49:14:49:0,14,1366 +chrX 1353342 . T . . END=1353463 GT:DP:GQ:MIN_DP:PL 0/0:50:22:47:0,22,1286 +chrX 1353464 . T . . END=1353464 GT:DP:GQ:MIN_DP:PL 0/0:67:3:67:0,3,1591 +chrX 1353465 . C . . END=1353486 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,111,1800 +chrX 1353487 . A . . END=1353487 GT:DP:GQ:MIN_DP:PL 0/0:63:0:63:0,0,1585 +chrX 1353488 . G . . END=1353583 GT:DP:GQ:MIN_DP:PL 0/0:68:60:68:0,60,1530 +chrX 1353584 . T . . END=1353595 GT:DP:GQ:MIN_DP:PL 0/0:53:0:53:0,0,598 +chrX 1353596 . C . . END=1353598 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 1353599 . C . . END=1353599 GT:DP:GQ:MIN_DP:PL 0/0:54:0:54:0,0,913 +chrX 1353600 . C . . END=1353605 GT:DP:GQ:MIN_DP:PL 0/0:46:78:46:0,78,1359 +chrX 1353606 . A . . END=1353606 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,297 +chrX 1353607 . G . . END=1353609 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,120,1800 +chrX 1353610 . C . . END=1353610 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,545 +chrX 1353611 . C . . END=1353624 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,105,1529 +chrX 1353625 . G . . END=1353625 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,600 +chrX 1353626 . G . . END=1353628 GT:DP:GQ:MIN_DP:PL 0/0:37:63:37:0,63,945 +chrX 1353629 . C . . END=1353631 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,704 +chrX 1353632 . C . . END=1353636 GT:DP:GQ:MIN_DP:PL 0/0:37:62:37:0,62,1128 +chrX 1353637 . A . . END=1353637 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,883 +chrX 1353638 . T . . END=1353640 GT:DP:GQ:MIN_DP:PL 0/0:33:29:33:0,29,877 +chrX 1353641 . T . . END=1353642 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,598 +chrX 1353643 . G . . END=1353645 GT:DP:GQ:MIN_DP:PL 0/0:31:55:31:0,55,907 +chrX 1353646 . T . . END=1353646 GT:DP:GQ:MIN_DP:PL 0/0:29:0:29:0,0,659 +chrX 1353647 . C . . END=1353652 GT:DP:GQ:MIN_DP:PL 0/0:29:41:29:0,41,853 +chrX 1353653 . C . . END=1353653 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,575 +chrX 1353654 . G . . END=1353663 GT:DP:GQ:MIN_DP:PL 0/0:30:20:22:0,20,645 +chrX 1353664 . A . . END=1353664 GT:DP:GQ:MIN_DP:PL 0/0:24:3:24:0,3,635 +chrX 1353665 . C . . END=1353688 GT:DP:GQ:MIN_DP:PL 0/0:24:28:21:0,28,600 +chrX 1353689 . C . . END=1353689 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,705 +chrX 1353690 . G . . END=1353708 GT:DP:GQ:MIN_DP:PL 0/0:38:23:33:0,23,918 +chrX 1353709 . A . . END=1353709 GT:DP:GQ:MIN_DP:PL 0/0:46:4:46:0,4,1089 +chrX 1353710 . A . . END=1353737 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,111,1508 +chrX 1353738 . A . . END=1353738 GT:DP:GQ:MIN_DP:PL 0/0:53:0:53:0,0,1274 +chrX 1353739 . C . . END=1353804 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,107,1800 +chrX 1353805 . A AC, 572.60 . AS_QUALapprox=|580|0;AS_VarDP=22|26|0;BaseQRankSum=-2.587;DP=64;MQRankSum=-1.878;QUALapprox=580;RAW_GT_COUNT=0,1,0;RAW_MQandDP=224487,64;ReadPosRankSum=0.238;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:22,26,0:48:99:580,0,507,646,585,1231:12,10,10,16 +chrX 1353806 . C . . END=1353969 GT:DP:GQ:MIN_DP:PL 0/0:15:25:13:0,25,373 +chrX 1353970 . A . . END=1353970 GT:DP:GQ:MIN_DP:PL 0/0:30:16:30:0,16,714 +chrX 1353971 . C . . END=1353975 GT:DP:GQ:MIN_DP:PL 0/0:30:63:30:0,63,945 +chrX 1353976 . A . . END=1353976 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,70 +chrX 1353977 . C . . END=1354353 GT:DP:GQ:MIN_DP:PL 0/0:52:57:52:0,57,993 +chrX 1354354 . G A, 794.64 . AS_QUALapprox=|802|0;AS_VarDP=18|30|0;BaseQRankSum=-1.372;DP=52;MQRankSum=0.000;QUALapprox=802;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=-1.523;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:18,30,0:48:99:802,0,472,856,561,1417:10,8,20,10 +chrX 1354355 . A . . END=1354392 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,120,1800 +chrX 1354393 . A C, 706.64 . AS_QUALapprox=|714|0;AS_VarDP=21|27|0;BaseQRankSum=-1.669;DP=52;MQRankSum=0.000;QUALapprox=714;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=2.692;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:21,27,0:48:99:714,0,566,777,647,1424:13,8,18,9 +chrX 1354394 . G . . END=1354507 GT:DP:GQ:MIN_DP:PL 0/0:49:33:49:0,33,1204 +chrX 1354508 . A G, 670.64 . AS_QUALapprox=|678|0;AS_VarDP=20|25|0;BaseQRankSum=0.429;DP=49;MQRankSum=0.000;QUALapprox=678;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=0.960;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:20,25,0:45:99:678,0,490,737,564,1301:9,11,11,14 +chrX 1354509 . A . . END=1354543 GT:DP:GQ:MIN_DP:PL 0/0:41:92:41:0,92,1155 +chrX 1354544 . T . . END=1354544 GT:DP:GQ:MIN_DP:PL 0/0:41:13:41:0,13,1213 +chrX 1354545 . A . . END=1354595 GT:DP:GQ:MIN_DP:PL 0/0:36:27:31:0,27,868 +chrX 1354596 . A . . END=1354596 GT:DP:GQ:MIN_DP:PL 0/0:27:12:27:0,12,769 +chrX 1354597 . G . . END=1354609 GT:DP:GQ:MIN_DP:PL 0/0:30:25:28:0,25,804 +chrX 1354610 . G . . END=1354612 GT:DP:GQ:MIN_DP:PL 0/0:26:0:26:0,0,685 +chrX 1354613 . G . . END=1354613 GT:DP:GQ:MIN_DP:PL 0/0:26:43:26:0,43,804 +chrX 1354614 . A . . END=1354614 GT:DP:GQ:MIN_DP:PL 0/0:24:0:24:0,0,595 +chrX 1354615 . A . . END=1354615 GT:DP:GQ:MIN_DP:PL 0/0:22:31:22:0,31,645 +chrX 1354616 . G . . END=1354616 GT:DP:GQ:MIN_DP:PL 0/0:23:0:23:0,0,610 +chrX 1354617 . A . . END=1354617 GT:DP:GQ:MIN_DP:PL 0/0:26:43:26:0,43,774 +chrX 1354618 . G . . END=1354619 GT:DP:GQ:MIN_DP:PL 0/0:24:3:24:0,3,644 +chrX 1354620 . A . . END=1354622 GT:DP:GQ:MIN_DP:PL 0/0:23:31:23:0,31,639 +chrX 1354623 . T G, 0.03 . AS_QUALapprox=|2|0;AS_VarDP=15|3|0;BaseQRankSum=-1.160;DP=23;MQRankSum=0.759;QUALapprox=2;RAW_GT_COUNT=0,1,0;RAW_MQandDP=76576,23;ReadPosRankSum=0.890;VarDP=18 GT:AD:DP:GQ:PL:SB 0/1:15,3,0:18:2:2,0,367,46,376,421:9,6,3,0 +chrX 1354624 . G . . END=1354640 GT:DP:GQ:MIN_DP:PL 0/0:22:30:17:0,30,450 +chrX 1354641 . A G, 212.64 . AS_QUALapprox=|220|0;AS_VarDP=12|9|0;BaseQRankSum=1.693;DP=28;MQRankSum=-0.052;QUALapprox=220;RAW_GT_COUNT=0,1,0;RAW_MQandDP=91377,28;ReadPosRankSum=-0.605;VarDP=21 GT:AD:DP:GQ:PL:SB 0/1:12,9,0:21:99:220,0,244,255,271,526:6,6,5,4 +chrX 1354642 . G . . END=1354646 GT:DP:GQ:MIN_DP:PL 0/0:24:63:24:0,63,620 +chrX 1354647 . T . . END=1354647 GT:DP:GQ:MIN_DP:PL 0/0:17:11:17:0,11,340 +chrX 1354648 . G . . END=1354651 GT:DP:GQ:MIN_DP:PL 0/0:22:43:22:0,43,601 +chrX 1354652 . A . . END=1354653 GT:DP:GQ:MIN_DP:PL 0/0:21:0:21:0,0,367 +chrX 1354654 . G . . END=1354657 GT:DP:GQ:MIN_DP:PL 0/0:26:43:26:0,43,734 +chrX 1354658 . A . . END=1354658 GT:DP:GQ:MIN_DP:PL 0/0:24:13:24:0,13,615 +chrX 1354659 . G . . END=1354686 GT:DP:GQ:MIN_DP:PL 0/0:21:36:18:0,36,491 +chrX 1354687 . C . . END=1354687 GT:DP:GQ:MIN_DP:PL 0/0:15:16:15:0,16,383 +chrX 1354688 . A . . END=1354696 GT:DP:GQ:MIN_DP:PL 0/0:21:36:19:0,36,540 +chrX 1354697 . A . . END=1354697 GT:DP:GQ:MIN_DP:PL 0/0:20:0:20:0,0,477 +chrX 1354698 . G . . END=1354701 GT:DP:GQ:MIN_DP:PL 0/0:20:36:19:0,36,540 +chrX 1354702 . G . . END=1354702 GT:DP:GQ:MIN_DP:PL 0/0:18:19:18:0,19,506 +chrX 1354703 . A . . END=1354703 GT:DP:GQ:MIN_DP:PL 0/0:17:36:17:0,36,540 +chrX 1354704 . G . . END=1354713 GT:DP:GQ:MIN_DP:PL 0/0:15:0:15:0,0,158 +chrX 1354714 . G . . END=1354714 GT:DP:GQ:MIN_DP:PL 0/0:15:27:15:0,27,405 +chrX 1354715 . A . . END=1354716 GT:DP:GQ:MIN_DP:PL 0/0:16:10:16:0,10,416 +chrX 1354717 . G . . END=1354717 GT:DP:GQ:MIN_DP:PL 0/0:14:30:14:0,30,450 +chrX 1354718 . G . . END=1354718 GT:DP:GQ:MIN_DP:PL 0/0:14:13:14:0,13,328 +chrX 1354719 . A . . END=1354728 GT:DP:GQ:MIN_DP:PL 0/0:14:27:13:0,27,295 +chrX 1354729 . G . . END=1354729 GT:DP:GQ:MIN_DP:PL 0/0:13:14:13:0,14,372 +chrX 1354730 . A . . END=1354757 GT:DP:GQ:MIN_DP:PL 0/0:13:21:13:0,21,338 +chrX 1354758 . A . . END=1354761 GT:DP:GQ:MIN_DP:PL 0/0:12:18:12:0,18,270 +chrX 1354762 . G . . END=1354772 GT:DP:GQ:MIN_DP:PL 0/0:10:21:10:0,21,237 +chrX 1354773 . A . . END=1354773 GT:DP:GQ:MIN_DP:PL 0/0:8:18:8:0,18,270 +chrX 1354774 . A . . END=1354797 GT:DP:GQ:MIN_DP:PL 0/0:10:21:10:0,21,315 +chrX 1354798 . A . . END=1354798 GT:DP:GQ:MIN_DP:PL 0/0:11:8:11:0,8,302 +chrX 1354799 . G . . END=1354817 GT:DP:GQ:MIN_DP:PL 0/0:13:30:12:0,30,327 +chrX 1354818 . T . . END=1354818 GT:DP:GQ:MIN_DP:PL 0/0:14:17:14:0,17,377 +chrX 1354819 . G . . END=1354820 GT:DP:GQ:MIN_DP:PL 0/0:14:39:14:0,39,585 +chrX 1354821 . A . . END=1354821 GT:DP:GQ:MIN_DP:PL 0/0:14:17:14:0,17,407 +chrX 1354822 . G . . END=1354841 GT:DP:GQ:MIN_DP:PL 0/0:14:36:14:0,36,540 +chrX 1354842 . A . . END=1354842 GT:DP:GQ:MIN_DP:PL 0/0:14:13:14:0,13,348 +chrX 1354843 . G . . END=1354855 GT:DP:GQ:MIN_DP:PL 0/0:15:24:15:0,24,360 +chrX 1354856 . C . . END=1354857 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,94 +chrX 1354858 . G . . END=1354858 GT:DP:GQ:MIN_DP:PL 0/0:15:30:15:0,30,450 +chrX 1354859 . G . . END=1354863 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,268 +chrX 1354864 . G . . END=1354865 GT:DP:GQ:MIN_DP:PL 0/0:14:33:14:0,33,495 +chrX 1354866 . A . . END=1354869 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,283 +chrX 1354870 . G . . END=1354870 GT:DP:GQ:MIN_DP:PL 0/0:14:36:14:0,36,540 +chrX 1354871 . A . . END=1354872 GT:DP:GQ:MIN_DP:PL 0/0:15:7:15:0,7,397 +chrX 1354873 . G . . END=1354873 GT:DP:GQ:MIN_DP:PL 0/0:14:39:14:0,39,585 +chrX 1354874 . G . . END=1354875 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,279 +chrX 1354876 . G . . END=1354876 GT:DP:GQ:MIN_DP:PL 0/0:14:39:14:0,39,585 +chrX 1354877 . G . . END=1354878 GT:DP:GQ:MIN_DP:PL 0/0:15:0:15:0,0,164 +chrX 1354879 . G . . END=1354879 GT:DP:GQ:MIN_DP:PL 0/0:15:39:15:0,39,585 +chrX 1354880 . A . . END=1354881 GT:DP:GQ:MIN_DP:PL 0/0:15:0:15:0,0,322 +chrX 1354882 . G . . END=1354882 GT:DP:GQ:MIN_DP:PL 0/0:14:39:14:0,39,585 +chrX 1354883 . A . . END=1354883 GT:DP:GQ:MIN_DP:PL 0/0:13:4:13:0,4,362 +chrX 1354884 . G . . END=1354885 GT:DP:GQ:MIN_DP:PL 0/0:15:20:15:0,20,432 +chrX 1354886 . A . . END=1354886 GT:DP:GQ:MIN_DP:PL 0/0:12:0:12:0,0,238 +chrX 1354887 . G . . END=1354887 GT:DP:GQ:MIN_DP:PL 0/0:14:39:14:0,39,585 +chrX 1354888 . G . . END=1354892 GT:DP:GQ:MIN_DP:PL 0/0:13:0:13:0,0,301 +chrX 1354893 . G . . END=1354893 GT:DP:GQ:MIN_DP:PL 0/0:13:39:13:0,39,412 +chrX 1354894 . G . . END=1354895 GT:DP:GQ:MIN_DP:PL 0/0:13:1:13:0,1,318 +chrX 1354896 . G . . END=1354896 GT:DP:GQ:MIN_DP:PL 0/0:12:36:12:0,36,397 +chrX 1354897 . G . . END=1354899 GT:DP:GQ:MIN_DP:PL 0/0:13:0:13:0,0,258 +chrX 1354900 . A . . END=1354902 GT:DP:GQ:MIN_DP:PL 0/0:13:39:13:0,39,381 +chrX 1354903 . G . . END=1354905 GT:DP:GQ:MIN_DP:PL 0/0:13:4:13:0,4,332 +chrX 1354906 . G . . END=1354906 GT:DP:GQ:MIN_DP:PL 0/0:15:20:15:0,20,422 +chrX 1354907 . G . . END=1354909 GT:DP:GQ:MIN_DP:PL 0/0:14:3:14:0,3,223 +chrX 1354910 . G . . END=1354912 GT:DP:GQ:MIN_DP:PL 0/0:16:23:16:0,23,437 +chrX 1354913 . T . . END=1354913 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,236 +chrX 1354914 . A . . END=1354914 GT:DP:GQ:MIN_DP:PL 0/0:15:42:15:0,42,630 +chrX 1354915 . G . . END=1354916 GT:DP:GQ:MIN_DP:PL 0/0:16:13:16:0,13,446 +chrX 1354917 . A . . END=1354919 GT:DP:GQ:MIN_DP:PL 0/0:14:31:14:0,31,442 +chrX 1354920 . G . . END=1354921 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,348 +chrX 1354922 . G . . END=1354923 GT:DP:GQ:MIN_DP:PL 0/0:15:39:15:0,39,585 +chrX 1354924 . T . . END=1354924 GT:DP:GQ:MIN_DP:PL 0/0:10:0:10:0,0,228 +chrX 1354925 . G . . END=1354925 GT:DP:GQ:MIN_DP:PL 0/0:13:39:13:0,39,422 +chrX 1354926 . A . . END=1354926 GT:DP:GQ:MIN_DP:PL 0/0:13:4:13:0,4,352 +chrX 1354927 . G . . END=1354928 GT:DP:GQ:MIN_DP:PL 0/0:14:39:14:0,39,585 +chrX 1354929 . T . . END=1354929 GT:DP:GQ:MIN_DP:PL 0/0:12:1:12:0,1,317 +chrX 1354930 . G . . END=1354931 GT:DP:GQ:MIN_DP:PL 0/0:13:39:13:0,39,442 +chrX 1354932 . G . . END=1354936 GT:DP:GQ:MIN_DP:PL 0/0:13:1:13:0,1,327 +chrX 1354937 . G . . END=1354938 GT:DP:GQ:MIN_DP:PL 0/0:14:25:13:0,25,383 +chrX 1354939 . G . . END=1354940 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,348 +chrX 1354941 . A . . END=1354955 GT:DP:GQ:MIN_DP:PL 0/0:14:24:12:0,24,360 +chrX 1354956 . A . . END=1354956 GT:DP:GQ:MIN_DP:PL 0/0:14:7:14:0,7,407 +chrX 1354957 . G . . END=1354959 GT:DP:GQ:MIN_DP:PL 0/0:14:27:14:0,27,405 +chrX 1354960 . A . . END=1354960 GT:DP:GQ:MIN_DP:PL 0/0:13:4:13:0,4,362 +chrX 1354961 . G . . END=1354965 GT:DP:GQ:MIN_DP:PL 0/0:13:27:12:0,27,405 +chrX 1354966 . A . . END=1354968 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,248 +chrX 1354969 . G . . END=1354969 GT:DP:GQ:MIN_DP:PL 0/0:12:24:12:0,24,360 +chrX 1354970 . G . . END=1354973 GT:DP:GQ:MIN_DP:PL 0/0:12:0:12:0,0,253 +chrX 1354974 . G . . END=1354974 GT:DP:GQ:MIN_DP:PL 0/0:13:21:13:0,21,315 +chrX 1354975 . A . . END=1354983 GT:DP:GQ:MIN_DP:PL 0/0:12:0:12:0,0,199 +chrX 1354984 . G . . END=1354987 GT:DP:GQ:MIN_DP:PL 0/0:10:21:10:0,21,315 +chrX 1354988 . A . . END=1355005 GT:DP:GQ:MIN_DP:PL 0/0:10:0:10:0,0,29 +chrX 1355006 . G . . END=1355006 GT:DP:GQ:MIN_DP:PL 0/0:12:30:12:0,30,450 +chrX 1355007 . A . . END=1355008 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,173 +chrX 1355009 . G . . END=1355009 GT:DP:GQ:MIN_DP:PL 0/0:12:30:12:0,30,450 +chrX 1355010 . A . . END=1355011 GT:DP:GQ:MIN_DP:PL 0/0:13:4:13:0,4,332 +chrX 1355012 . G . . END=1355013 GT:DP:GQ:MIN_DP:PL 0/0:13:30:13:0,30,450 +chrX 1355014 . A . . END=1355028 GT:DP:GQ:MIN_DP:PL 0/0:13:0:13:0,0,49 +chrX 1355029 . G . . END=1355029 GT:DP:GQ:MIN_DP:PL 0/0:15:20:15:0,20,392 +chrX 1355030 . G . . END=1355043 GT:DP:GQ:MIN_DP:PL 0/0:15:0:15:0,0,148 +chrX 1355044 . A . . END=1355044 GT:DP:GQ:MIN_DP:PL 0/0:13:24:13:0,24,332 +chrX 1355045 . G . . END=1355050 GT:DP:GQ:MIN_DP:PL 0/0:17:0:17:0,0,232 +chrX 1355051 . G . . END=1355051 GT:DP:GQ:MIN_DP:PL 0/0:15:39:15:0,39,585 +chrX 1355052 . G . . END=1355060 GT:DP:GQ:MIN_DP:PL 0/0:13:0:13:0,0,128 +chrX 1355061 . G . . END=1355061 GT:DP:GQ:MIN_DP:PL 0/0:14:28:14:0,28,387 +chrX 1355062 . A . . END=1355064 GT:DP:GQ:MIN_DP:PL 0/0:13:0:13:0,0,273 +chrX 1355065 . A . . END=1355066 GT:DP:GQ:MIN_DP:PL 0/0:16:33:16:0,33,495 +chrX 1355067 . G . . END=1355068 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,337 +chrX 1355069 . G . . END=1355069 GT:DP:GQ:MIN_DP:PL 0/0:16:33:16:0,33,495 +chrX 1355070 . G . . END=1355070 GT:DP:GQ:MIN_DP:PL 0/0:16:13:16:0,13,437 +chrX 1355071 . G . . END=1355071 GT:DP:GQ:MIN_DP:PL 0/0:15:24:15:0,24,360 +chrX 1355072 . G . . END=1355072 GT:DP:GQ:MIN_DP:PL 0/0:16:13:16:0,13,437 +chrX 1355073 . G . . END=1355073 GT:DP:GQ:MIN_DP:PL 0/0:15:21:15:0,21,315 +chrX 1355074 . A . . END=1355075 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,328 +chrX 1355076 . G . . END=1355076 GT:DP:GQ:MIN_DP:PL 0/0:15:20:15:0,20,412 +chrX 1355077 . A . . END=1355085 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,213 +chrX 1355086 . G . . END=1355086 GT:DP:GQ:MIN_DP:PL 0/0:15:33:15:0,33,495 +chrX 1355087 . G . . END=1355087 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,308 +chrX 1355088 . G . . END=1355088 GT:DP:GQ:MIN_DP:PL 0/0:14:33:14:0,33,495 +chrX 1355089 . C . . END=1355092 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,237 +chrX 1355093 . A . . END=1355093 GT:DP:GQ:MIN_DP:PL 0/0:16:42:16:0,42,630 +chrX 1355094 . G . . END=1355094 GT:DP:GQ:MIN_DP:PL 0/0:17:16:17:0,16,511 +chrX 1355095 . G . . END=1355095 GT:DP:GQ:MIN_DP:PL 0/0:16:42:16:0,42,630 +chrX 1355096 . A . . END=1355096 GT:DP:GQ:MIN_DP:PL 0/0:15:0:15:0,0,292 +chrX 1355097 . A . . END=1355099 GT:DP:GQ:MIN_DP:PL 0/0:13:39:13:0,39,411 +chrX 1355100 . A . . END=1355101 GT:DP:GQ:MIN_DP:PL 0/0:14:1:14:0,1,317 +chrX 1355102 . G . . END=1355102 GT:DP:GQ:MIN_DP:PL 0/0:14:42:14:0,42,446 +chrX 1355103 . A . . END=1355103 GT:DP:GQ:MIN_DP:PL 0/0:13:4:13:0,4,342 +chrX 1355104 . G . . END=1355104 GT:DP:GQ:MIN_DP:PL 0/0:16:45:16:0,45,675 +chrX 1355105 . C . . END=1355105 GT:DP:GQ:MIN_DP:PL 0/0:10:0:10:0,0,209 +chrX 1355106 . G . . END=1355107 GT:DP:GQ:MIN_DP:PL 0/0:16:39:16:0,39,585 +chrX 1355108 . G . . END=1355115 GT:DP:GQ:MIN_DP:PL 0/0:17:0:17:0,0,422 +chrX 1355116 . G . . END=1355135 GT:DP:GQ:MIN_DP:PL 0/0:17:30:16:0,30,401 +chrX 1355136 . T . . END=1355136 GT:DP:GQ:MIN_DP:PL 0/0:16:8:16:0,8,346 +chrX 1355137 . G . . END=1355149 GT:DP:GQ:MIN_DP:PL 0/0:14:22:12:0,22,328 +chrX 1355150 . G . . END=1355151 GT:DP:GQ:MIN_DP:PL 0/0:14:4:14:0,4,352 +chrX 1355152 . G . . END=1355152 GT:DP:GQ:MIN_DP:PL 0/0:15:42:15:0,42,630 +chrX 1355153 . A . . END=1355153 GT:DP:GQ:MIN_DP:PL 0/0:12:0:12:0,0,268 +chrX 1355154 . G . . END=1355155 GT:DP:GQ:MIN_DP:PL 0/0:14:36:14:0,36,432 +chrX 1355156 . G . . END=1355161 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,328 +chrX 1355162 . A . . END=1355162 GT:DP:GQ:MIN_DP:PL 0/0:13:24:13:0,24,360 +chrX 1355163 . A . . END=1355244 GT:DP:GQ:MIN_DP:PL 0/0:6:0:6:0,0,0 +chrX 1355245 . G . . END=1355249 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,315 +chrX 1355250 . A . . END=1355250 GT:DP:GQ:MIN_DP:PL 0/0:9:0:9:0,0,193 +chrX 1355251 . G . . END=1355252 GT:DP:GQ:MIN_DP:PL 0/0:9:24:9:0,24,360 +chrX 1355253 . A . . END=1355253 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,178 +chrX 1355254 . G . . END=1355254 GT:DP:GQ:MIN_DP:PL 0/0:9:24:9:0,24,360 +chrX 1355255 . G . . END=1355256 GT:DP:GQ:MIN_DP:PL 0/0:9:0:9:0,0,213 +chrX 1355257 . G . . END=1355258 GT:DP:GQ:MIN_DP:PL 0/0:9:24:9:0,24,258 +chrX 1355259 . G . . END=1355259 GT:DP:GQ:MIN_DP:PL 0/0:9:0:9:0,0,223 +chrX 1355260 . G . . END=1355260 GT:DP:GQ:MIN_DP:PL 0/0:9:24:9:0,24,360 +chrX 1355261 . A . . END=1355262 GT:DP:GQ:MIN_DP:PL 0/0:9:2:9:0,2,203 +chrX 1355263 . A . . END=1355266 GT:DP:GQ:MIN_DP:PL 0/0:9:24:9:0,24,248 +chrX 1355267 . T . . END=1355267 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,168 +chrX 1355268 . G . . END=1355271 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,223 +chrX 1355272 . G . . END=1355297 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,79 +chrX 1355298 . A . . END=1355302 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,315 +chrX 1355303 . G . . END=1355304 GT:DP:GQ:MIN_DP:PL 0/0:9:13:9:0,13,244 +chrX 1355305 . G . . END=1355308 GT:DP:GQ:MIN_DP:PL 0/0:8:24:8:0,24,268 +chrX 1355309 . C . . END=1355309 GT:DP:GQ:MIN_DP:PL 0/0:9:0:9:0,0,205 +chrX 1355310 . A . . END=1355312 GT:DP:GQ:MIN_DP:PL 0/0:9:27:9:0,27,272 +chrX 1355313 . A . . END=1355313 GT:DP:GQ:MIN_DP:PL 0/0:9:13:9:0,13,264 +chrX 1355314 . G . . END=1355334 GT:DP:GQ:MIN_DP:PL 0/0:11:24:9:0,24,268 +chrX 1355335 . T . . END=1355335 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,338 +chrX 1355336 . G . . END=1355347 GT:DP:GQ:MIN_DP:PL 0/0:14:33:12:0,33,352 +chrX 1355348 . T . . END=1355348 GT:DP:GQ:MIN_DP:PL 0/0:13:4:13:0,4,352 +chrX 1355349 . G . . END=1355379 GT:DP:GQ:MIN_DP:PL 0/0:16:25:13:0,25,383 +chrX 1355380 . T . . END=1355380 GT:DP:GQ:MIN_DP:PL 0/0:19:18:19:0,18,532 +chrX 1355381 . A . . END=1355395 GT:DP:GQ:MIN_DP:PL 0/0:22:28:20:0,28,620 +chrX 1355396 . A . . END=1355396 GT:DP:GQ:MIN_DP:PL 0/0:22:17:22:0,17,605 +chrX 1355397 . G . . END=1355426 GT:DP:GQ:MIN_DP:PL 0/0:22:22:20:0,22,571 +chrX 1355427 . A . . END=1355427 GT:DP:GQ:MIN_DP:PL 0/0:23:0:23:0,0,580 +chrX 1355428 . G . . END=1355441 GT:DP:GQ:MIN_DP:PL 0/0:27:47:27:0,47,680 +chrX 1355442 . A . . END=1355442 GT:DP:GQ:MIN_DP:PL 0/0:28:15:28:0,15,794 +chrX 1355443 . G . . END=1355444 GT:DP:GQ:MIN_DP:PL 0/0:30:65:30:0,65,917 +chrX 1355445 . A . . END=1355446 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,743 +chrX 1355447 . G . . END=1355447 GT:DP:GQ:MIN_DP:PL 0/0:30:55:30:0,55,923 +chrX 1355448 . A . . END=1355451 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,651 +chrX 1355452 . G . . END=1355453 GT:DP:GQ:MIN_DP:PL 0/0:32:61:32:0,61,983 +chrX 1355454 . A . . END=1355454 GT:DP:GQ:MIN_DP:PL 0/0:27:12:27:0,12,749 +chrX 1355455 . G . . END=1355457 GT:DP:GQ:MIN_DP:PL 0/0:32:58:32:0,58,907 +chrX 1355458 . T . . END=1355458 GT:DP:GQ:MIN_DP:PL 0/0:26:0:26:0,0,334 +chrX 1355459 . A . . END=1355464 GT:DP:GQ:MIN_DP:PL 0/0:33:32:27:0,32,739 +chrX 1355465 . A . . END=1355465 GT:DP:GQ:MIN_DP:PL 0/0:30:1:30:0,1,664 +chrX 1355466 . G . . END=1355655 GT:DP:GQ:MIN_DP:PL 0/0:40:22:32:0,22,763 +chrX 1355656 . G T, 522.64 . AS_QUALapprox=|530|0;AS_VarDP=19|20|0;BaseQRankSum=1.141;DP=42;MQRankSum=0.000;QUALapprox=530;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151200,42;ReadPosRankSum=0.126;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:19,20,0:39:99:530,0,414,585,474,1059:13,6,10,10 +chrX 1355657 . G . . END=1356357 GT:DP:GQ:MIN_DP:PL 0/0:65:93:65:0,93,1240 +chrX 1356358 . A . . END=1356359 GT:DP:GQ:MIN_DP:PL 0/0:57:0:57:0,0,973 +chrX 1356360 . C . . END=1356366 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,120,1800 +chrX 1356367 . A . . END=1356367 GT:DP:GQ:MIN_DP:PL 0/0:48:16:48:0,16,927 +chrX 1356368 . C . . END=1356427 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,104,1250 +chrX 1356428 . A G, 609.64 . AS_QUALapprox=|617|0;AS_VarDP=24|22|0;BaseQRankSum=1.344;DP=49;MQRankSum=0.000;QUALapprox=617;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=0.253;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:24,22,0:46:99:617,0,641,689,707,1396:9,15,6,16 +chrX 1356429 . T . . END=1356784 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,113,1678 +chrX 1356785 . A C, 782.64 . AS_QUALapprox=|790|0;AS_VarDP=35|30|0;BaseQRankSum=1.462;DP=68;MQRankSum=0.957;QUALapprox=790;RAW_GT_COUNT=0,1,0;RAW_MQandDP=243409,68;ReadPosRankSum=0.066;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:35,30,0:65:99:790,0,882,894,972,1866:13,22,16,14 +chrX 1356786 . A . . END=1356996 GT:DP:GQ:MIN_DP:PL 0/0:78:99:78:0,120,1800 +chrX 1356997 . A G, 1033.64 . AS_QUALapprox=|1041|0;AS_VarDP=36|39|0;BaseQRankSum=0.058;DP=79;MQRankSum=0.000;QUALapprox=1041;RAW_GT_COUNT=0,1,0;RAW_MQandDP=284400,79;ReadPosRankSum=0.276;VarDP=75 GT:AD:DP:GQ:PL:SB 0/1:36,39,0:75:99:1041,0,967,1149,1083,2232:23,13,16,23 +chrX 1356998 . C . . END=1357010 GT:DP:GQ:MIN_DP:PL 0/0:75:99:75:0,120,1800 +chrX 1357011 . G A, 1049.64 . AS_QUALapprox=|1057|0;AS_VarDP=36|37|0;BaseQRankSum=2.774;DP=75;MQRankSum=0.000;QUALapprox=1057;RAW_GT_COUNT=0,1,0;RAW_MQandDP=270000,75;ReadPosRankSum=0.044;VarDP=73 GT:AD:DP:GQ:PL:SB 0/1:36,37,0:73:99:1057,0,911,1164,1022,2186:23,13,15,22 +chrX 1357012 . C . . END=1357572 GT:DP:GQ:MIN_DP:PL 0/0:58:95:58:0,95,1416 +chrX 1357573 . T C, 1414.06 . AS_QUALapprox=|1428|0;AS_VarDP=0|45|0;DP=46;QUALapprox=1428;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;VarDP=45 GT:AD:DP:GQ:PL:SB 1/1:0,45,0:45:99:1428,134,0,1428,134,1428:0,0,18,27 +chrX 1357574 . G . . END=1357678 GT:DP:GQ:MIN_DP:PL 0/0:54:72:54:0,72,1438 +chrX 1357679 . G A, 714.64 . AS_QUALapprox=|722|0;AS_VarDP=24|25|0;BaseQRankSum=2.129;DP=52;MQRankSum=0.000;QUALapprox=722;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=-0.260;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:24,25,0:49:99:722,0,647,794,722,1516:12,12,12,13 +chrX 1357680 . C . . END=1359574 GT:DP:GQ:MIN_DP:PL 0/0:40:27:35:0,27,866 +chrX 1359575 . T C, 428.64 . AS_QUALapprox=|436|0;AS_VarDP=20|17|0;BaseQRankSum=-0.693;DP=37;MQRankSum=0.000;QUALapprox=436;RAW_GT_COUNT=0,1,0;RAW_MQandDP=133200,37;ReadPosRankSum=-0.290;VarDP=37 GT:AD:DP:GQ:PL:SB 0/1:20,17,0:37:99:436,0,534,494,585,1079:10,10,8,9 +chrX 1359576 . C . . END=1359618 GT:DP:GQ:MIN_DP:PL 0/0:41:62:41:0,62,1047 +chrX 1359619 . A . . END=1359619 GT:DP:GQ:MIN_DP:PL 0/0:35:19:35:0,19,754 +chrX 1359620 . T . . END=1359772 GT:DP:GQ:MIN_DP:PL 0/0:44:21:40:0,21,923 +chrX 1359773 . A . . END=1359773 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,887 +chrX 1359774 . T . . END=1359837 GT:DP:GQ:MIN_DP:PL 0/0:45:56:45:0,56,1034 +chrX 1359838 . G . . END=1359838 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,1026 +chrX 1359839 . T . . END=1360022 GT:DP:GQ:MIN_DP:PL 0/0:59:32:50:0,32,1159 +chrX 1360023 . T . . END=1360023 GT:DP:GQ:MIN_DP:PL 0/0:56:0:56:0,0,1351 +chrX 1360024 . T . . END=1360030 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,102,1549 +chrX 1360031 . ATC A, 617.60 . AS_QUALapprox=|625|0;AS_VarDP=20|17|0;BaseQRankSum=-0.252;DP=49;MQRankSum=-1.899;QUALapprox=625;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172546,49;ReadPosRankSum=1.036;VarDP=37 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:20,17,0:37:99:0|1:1360031_ATC_A:625,0,751,685,803,1488:1360031:10,10,6,11 +chrX 1360034 . T . . END=1360056 GT:DP:GQ:MIN_DP:PL 0/0:41:93:41:0,93,1061 +chrX 1360057 . A G, 654.64 . AS_QUALapprox=|662|0;AS_VarDP=22|19|0;BaseQRankSum=1.868;DP=44;MQRankSum=-1.506;QUALapprox=662;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154789,44;ReadPosRankSum=-1.721;VarDP=41 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,19,0:41:99:0|1:1360031_ATC_A:662,0,722,727,780,1506:1360031:9,13,9,10 +chrX 1360058 . T . . END=1360138 GT:DP:GQ:MIN_DP:PL 0/0:43:47:43:0,47,918 +chrX 1360139 . G A, 268.64 . AS_QUALapprox=|276|0;AS_VarDP=20|14|0;BaseQRankSum=-1.534;DP=40;MQRankSum=0.000;QUALapprox=276;RAW_GT_COUNT=0,1,0;RAW_MQandDP=144000,40;ReadPosRankSum=1.593;VarDP=34 GT:AD:DP:GQ:PL:SB 0/1:20,14,0:34:99:276,0,499,335,541,875:9,11,8,6 +chrX 1360140 . T . . END=1360144 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,115,1527 +chrX 1360145 . G . . END=1360145 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,966 +chrX 1360146 . T . . END=1360146 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,101,1539 +chrX 1360147 . G . . END=1360147 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,899 +chrX 1360148 . T . . END=1360172 GT:DP:GQ:MIN_DP:PL 0/0:51:76:51:0,76,1233 +chrX 1360173 . A . . END=1360173 GT:DP:GQ:MIN_DP:PL 0/0:50:0:50:0,0,978 +chrX 1360174 . T . . END=1360198 GT:DP:GQ:MIN_DP:PL 0/0:54:81:54:0,81,1151 +chrX 1360199 . A . . END=1360199 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,851 +chrX 1360200 . T . . END=1360219 GT:DP:GQ:MIN_DP:PL 0/0:47:76:47:0,76,1251 +chrX 1360220 . TTCTCTGTGTCTGTCTCTGTATCTCTCTCCCTTTCTCCCTCCATCTTTCTCTCTCTCTCCTGGTCTCTATCTCCCCCTCTCCCTGTC T, 495.60 . AS_QUALapprox=|503|0;AS_VarDP=25|14|0;BaseQRankSum=1.506;DP=58;MQRankSum=-0.345;QUALapprox=503;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205651,58;ReadPosRankSum=-1.165;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:25,14,0:39:99:503,0,970,578,1027,1606:14,11,9,5 +chrX 1360307 . T . . END=1360317 GT:DP:GQ:MIN_DP:PL 0/0:39:45:39:0,45,1036 +chrX 1360318 . G . . END=1360318 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,938 +chrX 1360319 . T . . END=1360323 GT:DP:GQ:MIN_DP:PL 0/0:37:86:37:0,86,1126 +chrX 1360324 . G . . END=1360324 GT:DP:GQ:MIN_DP:PL 0/0:34:8:34:0,8,903 +chrX 1360325 . T . . END=1360325 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,102,1530 +chrX 1360326 . A . . END=1360326 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,722 +chrX 1360327 . T . . END=1360355 GT:DP:GQ:MIN_DP:PL 0/0:43:52:43:0,52,1105 +chrX 1360356 . A . . END=1360356 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,847 +chrX 1360357 . T . . END=1360928 GT:DP:GQ:MIN_DP:PL 0/0:40:39:38:0,39,921 +chrX 1360929 . G . . END=1360929 GT:DP:GQ:MIN_DP:PL 0/0:26:0:26:0,0,466 +chrX 1360930 . T . . END=1360942 GT:DP:GQ:MIN_DP:PL 0/0:31:40:31:0,40,569 +chrX 1360943 . T . . END=1360943 GT:DP:GQ:MIN_DP:PL 0/0:20:0:20:0,0,455 +chrX 1360944 . C . . END=1360950 GT:DP:GQ:MIN_DP:PL 0/0:23:57:23:0,57,655 +chrX 1360951 . G C, 21.64 . AS_QUALapprox=|29|0;AS_VarDP=19|2|0;BaseQRankSum=0.530;DP=21;MQRankSum=1.992;QUALapprox=29;RAW_GT_COUNT=0,1,0;RAW_MQandDP=41405,21;ReadPosRankSum=-2.039;VarDP=21 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:19,2,0:21:29:0|1:1360951_G_C:29,0,670,81,676,756:1360951:2,17,0,2 +chrX 1360952 . T . . END=1360952 GT:DP:GQ:MIN_DP:PL 0/0:18:45:18:0,45,675 +chrX 1360953 . C G, 21.64 . AS_QUALapprox=|29|0;AS_VarDP=19|2|0;BaseQRankSum=0.689;DP=21;MQRankSum=1.992;QUALapprox=29;RAW_GT_COUNT=0,1,0;RAW_MQandDP=41405,21;ReadPosRankSum=-2.098;VarDP=21 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:19,2,0:21:29:0|1:1360951_G_C:29,0,670,81,676,756:1360951:2,17,0,2 +chrX 1360954 . T . . END=1361020 GT:DP:GQ:MIN_DP:PL 0/0:18:32:14:0,32,467 +chrX 1361021 . G . . END=1361021 GT:DP:GQ:MIN_DP:PL 0/0:15:0:15:0,0,344 +chrX 1361022 . T . . END=1361031 GT:DP:GQ:MIN_DP:PL 0/0:18:23:16:0,23,446 +chrX 1361032 . C . . END=1361032 GT:DP:GQ:MIN_DP:PL 0/0:18:4:18:0,4,446 +chrX 1361033 . C . . END=1361034 GT:DP:GQ:MIN_DP:PL 0/0:19:48:19:0,48,720 +chrX 1361035 . T . . END=1361035 GT:DP:GQ:MIN_DP:PL 0/0:18:0:18:0,0,397 +chrX 1361036 . C . . END=1361044 GT:DP:GQ:MIN_DP:PL 0/0:19:22:17:0,22,481 +chrX 1361045 . G . . END=1361045 GT:DP:GQ:MIN_DP:PL 0/0:19:0:19:0,0,353 +chrX 1361046 . T . . END=1361053 GT:DP:GQ:MIN_DP:PL 0/0:22:25:21:0,25,585 +chrX 1361054 . T . . END=1361054 GT:DP:GQ:MIN_DP:PL 0/0:21:14:21:0,14,601 +chrX 1361055 . C . . END=1361058 GT:DP:GQ:MIN_DP:PL 0/0:22:25:20:0,25,575 +chrX 1361059 . T . . END=1361059 GT:DP:GQ:MIN_DP:PL 0/0:23:15:23:0,15,581 +chrX 1361060 . C . . END=1361061 GT:DP:GQ:MIN_DP:PL 0/0:22:34:21:0,34,669 +chrX 1361062 . C . . END=1361064 GT:DP:GQ:MIN_DP:PL 0/0:24:0:24:0,0,547 +chrX 1361065 . C . . END=1361068 GT:DP:GQ:MIN_DP:PL 0/0:23:34:23:0,34,710 +chrX 1361069 . G . . END=1361069 GT:DP:GQ:MIN_DP:PL 0/0:20:0:20:0,0,358 +chrX 1361070 . T . . END=1361081 GT:DP:GQ:MIN_DP:PL 0/0:26:29:21:0,29,610 +chrX 1361082 . T . . END=1361083 GT:DP:GQ:MIN_DP:PL 0/0:26:0:26:0,0,471 +chrX 1361084 . C . . END=1361092 GT:DP:GQ:MIN_DP:PL 0/0:30:24:24:0,24,684 +chrX 1361093 . G . . END=1361093 GT:DP:GQ:MIN_DP:PL 0/0:28:14:28:0,14,733 +chrX 1361094 . T . . END=1361106 GT:DP:GQ:MIN_DP:PL 0/0:32:26:30:0,26,842 +chrX 1361107 . T . . END=1361107 GT:DP:GQ:MIN_DP:PL 0/0:29:0:29:0,0,639 +chrX 1361108 . C . . END=1361110 GT:DP:GQ:MIN_DP:PL 0/0:33:58:33:0,58,907 +chrX 1361111 . C . . END=1361112 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,756 +chrX 1361113 . C . . END=1361155 GT:DP:GQ:MIN_DP:PL 0/0:35:27:34:0,27,790 +chrX 1361156 . T . . END=1361156 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,777 +chrX 1361157 . C . . END=1361158 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +chrX 1361159 . T . . END=1361159 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,676 +chrX 1361160 . T . . END=1361164 GT:DP:GQ:MIN_DP:PL 0/0:37:56:37:0,56,997 +chrX 1361165 . G . . END=1361165 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,809 +chrX 1361166 . T . . END=1361196 GT:DP:GQ:MIN_DP:PL 0/0:42:72:42:0,72,1120 +chrX 1361197 . A . . END=1361197 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,727 +chrX 1361198 . T . . END=1361198 GT:DP:GQ:MIN_DP:PL 0/0:45:31:45:0,31,1234 +chrX 1361199 . T . . END=1361200 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,1120 +chrX 1361201 . C . . END=1361201 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,120,1800 +chrX 1361202 . C . . END=1361202 GT:DP:GQ:MIN_DP:PL 0/0:48:5:48:0,5,1270 +chrX 1361203 . C . . END=1361665 GT:DP:GQ:MIN_DP:PL 0/0:57:42:57:0,42,1052 +chrX 1361666 . T A, 693.64 . AS_QUALapprox=|701|0;AS_VarDP=13|24|0;BaseQRankSum=1.768;DP=38;MQRankSum=0.000;QUALapprox=701;RAW_GT_COUNT=0,1,0;RAW_MQandDP=136800,38;ReadPosRankSum=1.114;VarDP=37 GT:AD:DP:GQ:PL:SB 0/1:13,24,0:37:99:701,0,301,740,373,1113:8,5,10,14 +chrX 1361667 . C . . END=1361754 GT:DP:GQ:MIN_DP:PL 0/0:33:22:32:0,22,833 +chrX 1361755 . GAA G,GA, 140.60 . AS_QUALapprox=|0|148|0;AS_VarDP=13|2|10|0;BaseQRankSum=1.182;DP=43;MQRankSum=0.000;QUALapprox=148;RAW_GT_COUNT=0,1,0;RAW_MQandDP=152564,43;ReadPosRankSum=0.824;VarDP=25 GT:AD:DP:GQ:PL:SB 0/2:13,2,10,0:25:99:148,157,630,0,234,183,202,537,260,538:5,8,7,5 +chrX 1361758 . A . . END=1362129 GT:DP:GQ:MIN_DP:PL 0/0:52:69:52:0,69,1111 +chrX 1362130 . GTC G, 1275.60 . AS_QUALapprox=|1283|0;AS_VarDP=22|34|0;BaseQRankSum=-0.423;DP=62;MQRankSum=0.000;QUALapprox=1283;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=-1.083;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:22,34,0:56:99:1283,0,772,1349,875,2224:10,12,19,15 +chrX 1362133 . T . . END=1362164 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 1362165 . C CCT, 1215.60 . AS_QUALapprox=|1223|0;AS_VarDP=18|35|0;BaseQRankSum=-1.106;DP=58;MQRankSum=0.000;QUALapprox=1223;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=0.103;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:18,35,0:53:99:1223,0,549,1278,654,1932:8,10,17,18 +chrX 1362166 . C . . END=1362320 GT:DP:GQ:MIN_DP:PL 0/0:64:83:64:0,83,1526 +chrX 1362321 . G . . END=1362321 GT:DP:GQ:MIN_DP:PL 0/0:54:0:54:0,0,1259 +chrX 1362322 . T . . END=1362367 GT:DP:GQ:MIN_DP:PL 0/0:65:29:64:0,29,1561 +chrX 1362368 . A . . END=1362368 GT:DP:GQ:MIN_DP:PL 0/0:59:0:59:0,0,1194 +chrX 1362369 . C . . END=1362465 GT:DP:GQ:MIN_DP:PL 0/0:65:76:65:0,76,1725 +chrX 1362466 . A . . END=1362466 GT:DP:GQ:MIN_DP:PL 0/0:66:0:66:0,0,1429 +chrX 1362467 . T . . END=1362493 GT:DP:GQ:MIN_DP:PL 0/0:71:21:68:0,21,1756 +chrX 1362494 . A . . END=1362494 GT:DP:GQ:MIN_DP:PL 0/0:68:11:68:0,11,1565 +chrX 1362495 . T . . END=1362633 GT:DP:GQ:MIN_DP:PL 0/0:60:71:60:0,71,1639 +chrX 1362634 . T C, 1107.64 . AS_QUALapprox=|1115|0;AS_VarDP=21|39|0;BaseQRankSum=0.372;DP=62;MQRankSum=0.000;QUALapprox=1115;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=0.961;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:21,39,0:60:99:1115,0,510,1178,627,1805:6,15,16,23 +chrX 1362635 . T . . END=1362689 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 1362690 . G A, 1131.64 . AS_QUALapprox=|1139|0;AS_VarDP=20|43|0;BaseQRankSum=-0.768;DP=65;MQRankSum=0.000;QUALapprox=1139;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=-1.160;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:20,43,0:63:99:1139,0,467,1199,595,1794:4,16,18,25 +chrX 1362691 . T . . END=1362768 GT:DP:GQ:MIN_DP:PL 0/0:50:94:50:0,94,1378 +chrX 1362769 . T TTTTA, 963.60 . AS_QUALapprox=|971|0;AS_VarDP=12|24|0;BaseQRankSum=1.461;DP=51;MQRankSum=0.000;QUALapprox=971;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-0.672;VarDP=36 GT:AD:DP:GQ:PL:SB 0/1:12,24,0:36:99:971,0,432,1008,504,1512:6,6,11,13 +chrX 1362770 . T . . END=1362806 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,102,1430 +chrX 1362807 . G A, 730.64 . AS_QUALapprox=|738|0;AS_VarDP=18|27|0;BaseQRankSum=-0.192;DP=45;MQRankSum=0.000;QUALapprox=738;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=0.382;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:18,27,0:45:99:738,0,461,792,541,1333:12,6,14,13 +chrX 1362808 . C . . END=1363125 GT:DP:GQ:MIN_DP:PL 0/0:46:84:46:0,84,1276 +chrX 1363126 . T C, 367.64 . AS_QUALapprox=|375|0;AS_VarDP=29|16|0;BaseQRankSum=1.162;DP=46;MQRankSum=0.000;QUALapprox=375;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=-0.795;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:29,16,0:45:99:375,0,762,462,809,1271:13,16,7,9 +chrX 1363127 . G . . END=1363318 GT:DP:GQ:MIN_DP:PL 0/0:58:93:58:0,93,1395 +chrX 1363319 . G . . END=1363319 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,812 +chrX 1363320 . A . . END=1363392 GT:DP:GQ:MIN_DP:PL 0/0:40:39:39:0,39,1051 +chrX 1363393 . C T, 419.64 . AS_QUALapprox=|427|0;AS_VarDP=24|16|0;BaseQRankSum=2.248;DP=42;MQRankSum=-1.718;QUALapprox=427;RAW_GT_COUNT=0,1,0;RAW_MQandDP=144500,42;ReadPosRankSum=-0.580;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:24,16,0:40:99:427,0,594,498,642,1141:10,14,6,10 +chrX 1363394 . G . . END=1363435 GT:DP:GQ:MIN_DP:PL 0/0:41:79:41:0,79,1171 +chrX 1363436 . G C, 407.64 . AS_QUALapprox=|415|0;AS_VarDP=23|16|0;BaseQRankSum=0.651;DP=40;MQRankSum=0.000;QUALapprox=415;RAW_GT_COUNT=0,1,0;RAW_MQandDP=144000,40;ReadPosRankSum=1.372;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:23,16,0:39:99:415,0,638,483,685,1169:8,15,7,9 +chrX 1363437 . A . . END=1363493 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,99,1381 +chrX 1363494 . G A, 745.64 . AS_QUALapprox=|753|0;AS_VarDP=15|27|0;BaseQRankSum=-0.558;DP=42;MQRankSum=0.000;QUALapprox=753;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151200,42;ReadPosRankSum=1.235;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:15,27,0:42:99:753,0,359,797,441,1238:6,9,14,13 +chrX 1363495 . T . . END=1364199 GT:DP:GQ:MIN_DP:PL 0/0:55:72:55:0,72,1135 +chrX 1364200 . A T, 674.64 . AS_QUALapprox=|682|0;AS_VarDP=20|27|0;BaseQRankSum=0.335;DP=51;MQRankSum=0.000;QUALapprox=682;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=0.248;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:20,27,0:47:99:682,0,424,741,504,1245:11,9,13,14 +chrX 1364201 . T . . END=1364796 GT:DP:GQ:MIN_DP:PL 0/0:62:62:62:0,62,1461 +chrX 1364797 . T A, 2843.06 . AS_QUALapprox=|2857|0;AS_VarDP=3|65|0;DP=68;MQRankSum=-0.143;QUALapprox=2857;RAW_GT_COUNT=0,0,1;RAW_MQandDP=243504,68;VarDP=68 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:3,65,0:68:99:0|1:1364797_T_A:2857,187,0,2862,196,2871:1364797:1,2,31,34 +chrX 1364798 . A T, 2828.06 . AS_QUALapprox=|2842|0;AS_VarDP=6|65|0;DP=71;MQRankSum=-0.253;QUALapprox=2842;RAW_GT_COUNT=0,0,1;RAW_MQandDP=254304,71;VarDP=71 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:6,65,0:71:99:0|1:1364797_T_A:2842,178,0,2853,196,2871:1364797:2,4,31,34 +chrX 1364799 . T . . END=1365336 GT:DP:GQ:MIN_DP:PL 0/0:74:42:74:0,42,1030 +chrX 1365337 . C . . END=1365337 GT:DP:GQ:MIN_DP:PL 0/0:37:2:37:0,2,918 +chrX 1365338 . G . . END=1365387 GT:DP:GQ:MIN_DP:PL 0/0:25:20:22:0,20,573 +chrX 1365388 . C . . END=1365388 GT:DP:GQ:MIN_DP:PL 0/0:18:0:18:0,0,436 +chrX 1365389 . T . . END=1365391 GT:DP:GQ:MIN_DP:PL 0/0:22:48:22:0,48,486 +chrX 1365392 . G . . END=1365392 GT:DP:GQ:MIN_DP:PL 0/0:23:18:23:0,18,270 +chrX 1365393 . C . . END=1365408 GT:DP:GQ:MIN_DP:PL 0/0:23:21:22:0,21,315 +chrX 1365409 . A . . END=1365409 GT:DP:GQ:MIN_DP:PL 0/0:23:0:23:0,0,491 +chrX 1365410 . G . . END=1365419 GT:DP:GQ:MIN_DP:PL 0/0:22:32:22:0,32,540 +chrX 1365420 . C . . END=1365420 GT:DP:GQ:MIN_DP:PL 0/0:15:10:15:0,10,442 +chrX 1365421 . G . . END=1365424 GT:DP:GQ:MIN_DP:PL 0/0:20:36:20:0,36,540 +chrX 1365425 . T . . END=1365425 GT:DP:GQ:MIN_DP:PL 0/0:19:18:19:0,18,502 +chrX 1365426 . G . . END=1365426 GT:DP:GQ:MIN_DP:PL 0/0:20:33:20:0,33,495 +chrX 1365427 . A . . END=1365427 GT:DP:GQ:MIN_DP:PL 0/0:17:1:17:0,1,432 +chrX 1365428 . G . . END=1365435 GT:DP:GQ:MIN_DP:PL 0/0:20:20:15:0,20,402 +chrX 1365436 . C . . END=1365436 GT:DP:GQ:MIN_DP:PL 0/0:13:0:13:0,0,74 +chrX 1365437 . G . . END=1365442 GT:DP:GQ:MIN_DP:PL 0/0:20:27:14:0,27,367 +chrX 1365443 . T . . END=1365443 GT:DP:GQ:MIN_DP:PL 0/0:17:16:17:0,16,431 +chrX 1365444 . G . . END=1365444 GT:DP:GQ:MIN_DP:PL 0/0:17:42:17:0,42,630 +chrX 1365445 . A . . END=1365445 GT:DP:GQ:MIN_DP:PL 0/0:15:16:15:0,16,363 +chrX 1365446 . G . . END=1365446 GT:DP:GQ:MIN_DP:PL 0/0:17:42:17:0,42,630 +chrX 1365447 . C . . END=1365447 GT:DP:GQ:MIN_DP:PL 0/0:10:5:10:0,5,258 +chrX 1365448 . G . . END=1365462 GT:DP:GQ:MIN_DP:PL 0/0:16:20:11:0,20,332 +chrX 1365463 . C . . END=1365466 GT:DP:GQ:MIN_DP:PL 0/0:13:0:13:0,0,199 +chrX 1365467 . G . . END=1365469 GT:DP:GQ:MIN_DP:PL 0/0:15:39:15:0,39,442 +chrX 1365470 . T . . END=1365470 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,357 +chrX 1365471 . G . . END=1365483 GT:DP:GQ:MIN_DP:PL 0/0:14:33:11:0,33,321 +chrX 1365484 . C . . END=1365484 GT:DP:GQ:MIN_DP:PL 0/0:9:0:9:0,0,174 +chrX 1365485 . G . . END=1365489 GT:DP:GQ:MIN_DP:PL 0/0:15:36:15:0,36,540 +chrX 1365490 . C . . END=1365490 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,274 +chrX 1365491 . G . . END=1365501 GT:DP:GQ:MIN_DP:PL 0/0:14:23:14:0,23,308 +chrX 1365502 . C . . END=1365502 GT:DP:GQ:MIN_DP:PL 0/0:10:0:10:0,0,168 +chrX 1365503 . G . . END=1365520 GT:DP:GQ:MIN_DP:PL 0/0:12:24:11:0,24,313 +chrX 1365521 . G . . END=1365521 GT:DP:GQ:MIN_DP:PL 0/0:13:4:13:0,4,362 +chrX 1365522 . G . . END=1365523 GT:DP:GQ:MIN_DP:PL 0/0:13:27:13:0,27,405 +chrX 1365524 . T . . END=1365524 GT:DP:GQ:MIN_DP:PL 0/0:10:5:10:0,5,238 +chrX 1365525 . G . . END=1365525 GT:DP:GQ:MIN_DP:PL 0/0:12:27:12:0,27,405 +chrX 1365526 . A . . END=1365526 GT:DP:GQ:MIN_DP:PL 0/0:11:19:11:0,19,313 +chrX 1365527 . G . . END=1365527 GT:DP:GQ:MIN_DP:PL 0/0:12:27:12:0,27,405 +chrX 1365528 . C . . END=1365528 GT:DP:GQ:MIN_DP:PL 0/0:9:13:9:0,13,264 +chrX 1365529 . G . . END=1365541 GT:DP:GQ:MIN_DP:PL 0/0:13:27:12:0,27,405 +chrX 1365542 . T . . END=1365542 GT:DP:GQ:MIN_DP:PL 0/0:13:14:13:0,14,352 +chrX 1365543 . G . . END=1365545 GT:DP:GQ:MIN_DP:PL 0/0:12:21:7:0,21,233 +chrX 1365546 . C . . END=1365547 GT:DP:GQ:MIN_DP:PL 0/0:12:5:12:0,5,268 +chrX 1365548 . G . . END=1365550 GT:DP:GQ:MIN_DP:PL 0/0:14:36:14:0,36,540 +chrX 1365551 . T . . END=1365551 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,338 +chrX 1365552 . G . . END=1365555 GT:DP:GQ:MIN_DP:PL 0/0:13:24:13:0,24,362 +chrX 1365556 . C . . END=1365557 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,217 +chrX 1365558 . G . . END=1365559 GT:DP:GQ:MIN_DP:PL 0/0:15:36:15:0,36,540 +chrX 1365560 . T . . END=1365560 GT:DP:GQ:MIN_DP:PL 0/0:14:17:14:0,17,356 +chrX 1365561 . G . . END=1365561 GT:DP:GQ:MIN_DP:PL 0/0:14:36:14:0,36,540 +chrX 1365562 . C . . END=1365562 GT:DP:GQ:MIN_DP:PL 0/0:9:0:9:0,0,203 +chrX 1365563 . G . . END=1365564 GT:DP:GQ:MIN_DP:PL 0/0:10:27:9:0,27,283 +chrX 1365565 . G . . END=1365565 GT:DP:GQ:MIN_DP:PL 0/0:15:10:15:0,10,382 +chrX 1365566 . G . . END=1365568 GT:DP:GQ:MIN_DP:PL 0/0:16:39:15:0,39,585 +chrX 1365569 . T . . END=1365569 GT:DP:GQ:MIN_DP:PL 0/0:16:13:16:0,13,416 +chrX 1365570 . G . . END=1365570 GT:DP:GQ:MIN_DP:PL 0/0:16:42:16:0,42,630 +chrX 1365571 . A . . END=1365571 GT:DP:GQ:MIN_DP:PL 0/0:15:0:15:0,0,302 +chrX 1365572 . G . . END=1365577 GT:DP:GQ:MIN_DP:PL 0/0:16:36:16:0,36,540 +chrX 1365578 . T . . END=1365578 GT:DP:GQ:MIN_DP:PL 0/0:13:14:13:0,14,342 +chrX 1365579 . G . . END=1365579 GT:DP:GQ:MIN_DP:PL 0/0:14:39:14:0,39,585 +chrX 1365580 . A . . END=1365580 GT:DP:GQ:MIN_DP:PL 0/0:11:8:11:0,8,262 +chrX 1365581 . G . . END=1365582 GT:DP:GQ:MIN_DP:PL 0/0:11:30:11:0,30,318 +chrX 1365583 . C . . END=1365583 GT:DP:GQ:MIN_DP:PL 0/0:10:0:10:0,0,68 +chrX 1365584 . G . . END=1365586 GT:DP:GQ:MIN_DP:PL 0/0:14:33:14:0,33,495 +chrX 1365587 . T . . END=1365587 GT:DP:GQ:MIN_DP:PL 0/0:15:0:15:0,0,312 +chrX 1365588 . G . . END=1365588 GT:DP:GQ:MIN_DP:PL 0/0:13:30:13:0,30,450 +chrX 1365589 . C . . END=1365590 GT:DP:GQ:MIN_DP:PL 0/0:12:2:12:0,2,233 +chrX 1365591 . C . . END=1365595 GT:DP:GQ:MIN_DP:PL 0/0:14:30:14:0,30,450 +chrX 1365596 . T . . END=1365596 GT:DP:GQ:MIN_DP:PL 0/0:13:14:13:0,14,342 +chrX 1365597 . G . . END=1365603 GT:DP:GQ:MIN_DP:PL 0/0:13:21:13:0,21,277 +chrX 1365604 . G . . END=1365605 GT:DP:GQ:MIN_DP:PL 0/0:13:11:13:0,11,317 +chrX 1365606 . G . . END=1365606 GT:DP:GQ:MIN_DP:PL 0/0:12:27:12:0,27,405 +chrX 1365607 . A . . END=1365607 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,213 +chrX 1365608 . G . . END=1365608 GT:DP:GQ:MIN_DP:PL 0/0:12:30:12:0,30,450 +chrX 1365609 . C . . END=1365609 GT:DP:GQ:MIN_DP:PL 0/0:10:16:10:0,16,258 +chrX 1365610 . G . . END=1365615 GT:DP:GQ:MIN_DP:PL 0/0:12:22:11:0,22,338 +chrX 1365616 . A . . END=1365616 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,213 +chrX 1365617 . G . . END=1365617 GT:DP:GQ:MIN_DP:PL 0/0:11:27:11:0,27,405 +chrX 1365618 . C . . END=1365619 GT:DP:GQ:MIN_DP:PL 0/0:12:0:12:0,0,80 +chrX 1365620 . G . . END=1365624 GT:DP:GQ:MIN_DP:PL 0/0:12:27:9:0,27,303 +chrX 1365625 . A . . END=1365625 GT:DP:GQ:MIN_DP:PL 0/0:13:0:13:0,0,303 +chrX 1365626 . G . . END=1365627 GT:DP:GQ:MIN_DP:PL 0/0:12:22:12:0,22,348 +chrX 1365628 . C . . END=1365628 GT:DP:GQ:MIN_DP:PL 0/0:10:0:10:0,0,228 +chrX 1365629 . G . . END=1365633 GT:DP:GQ:MIN_DP:PL 0/0:13:30:13:0,30,338 +chrX 1365634 . A . . END=1365634 GT:DP:GQ:MIN_DP:PL 0/0:12:11:12:0,11,307 +chrX 1365635 . G . . END=1365636 GT:DP:GQ:MIN_DP:PL 0/0:12:33:12:0,33,362 +chrX 1365637 . C . . END=1365637 GT:DP:GQ:MIN_DP:PL 0/0:12:1:12:0,1,318 +chrX 1365638 . G . . END=1365640 GT:DP:GQ:MIN_DP:PL 0/0:13:36:13:0,36,540 +chrX 1365641 . T . . END=1365641 GT:DP:GQ:MIN_DP:PL 0/0:13:4:13:0,4,332 +chrX 1365642 . G . . END=1365642 GT:DP:GQ:MIN_DP:PL 0/0:14:39:14:0,39,585 +chrX 1365643 . C . . END=1365643 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,279 +chrX 1365644 . G . . END=1365644 GT:DP:GQ:MIN_DP:PL 0/0:13:39:13:0,39,382 +chrX 1365645 . C . . END=1365645 GT:DP:GQ:MIN_DP:PL 0/0:12:0:12:0,0,268 +chrX 1365646 . G . . END=1365651 GT:DP:GQ:MIN_DP:PL 0/0:16:23:16:0,23,427 +chrX 1365652 . A . . END=1365652 GT:DP:GQ:MIN_DP:PL 0/0:14:3:14:0,3,318 +chrX 1365653 . G . . END=1365653 GT:DP:GQ:MIN_DP:PL 0/0:14:27:14:0,27,357 +chrX 1365654 . C . . END=1365655 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,139 +chrX 1365656 . G . . END=1365660 GT:DP:GQ:MIN_DP:PL 0/0:14:33:14:0,33,495 +chrX 1365661 . C . . END=1365662 GT:DP:GQ:MIN_DP:PL 0/0:12:0:12:0,0,115 +chrX 1365663 . C . . END=1365671 GT:DP:GQ:MIN_DP:PL 0/0:12:21:12:0,21,297 +chrX 1365672 . C . . END=1365673 GT:DP:GQ:MIN_DP:PL 0/0:11:9:11:0,9,189 +chrX 1365674 . G . . END=1365676 GT:DP:GQ:MIN_DP:PL 0/0:11:27:9:0,27,283 +chrX 1365677 . T . . END=1365677 GT:DP:GQ:MIN_DP:PL 0/0:11:19:11:0,19,263 +chrX 1365678 . G . . END=1365678 GT:DP:GQ:MIN_DP:PL 0/0:9:27:9:0,27,262 +chrX 1365679 . C . . END=1365679 GT:DP:GQ:MIN_DP:PL 0/0:7:0:7:0,0,133 +chrX 1365680 . G . . END=1365685 GT:DP:GQ:MIN_DP:PL 0/0:11:27:11:0,27,231 +chrX 1365686 . T . . END=1365691 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,162 +chrX 1365692 . G . . END=1365693 GT:DP:GQ:MIN_DP:PL 0/0:12:27:12:0,27,405 +chrX 1365694 . G . . END=1365695 GT:DP:GQ:MIN_DP:PL 0/0:9:0:9:0,0,158 +chrX 1365696 . G . . END=1365696 GT:DP:GQ:MIN_DP:PL 0/0:10:27:10:0,27,405 +chrX 1365697 . C . . END=1365697 GT:DP:GQ:MIN_DP:PL 0/0:4:0:4:0,0,39 +chrX 1365698 . G . . END=1365698 GT:DP:GQ:MIN_DP:PL 0/0:9:27:9:0,27,252 +chrX 1365699 . C . . END=1365706 GT:DP:GQ:MIN_DP:PL 0/0:10:0:10:0,0,178 +chrX 1365707 . G . . END=1365707 GT:DP:GQ:MIN_DP:PL 0/0:9:27:9:0,27,272 +chrX 1365708 . C . . END=1365709 GT:DP:GQ:MIN_DP:PL 0/0:7:0:7:0,0,0 +chrX 1365710 . G . . END=1365714 GT:DP:GQ:MIN_DP:PL 0/0:11:30:11:0,30,308 +chrX 1365715 . C . . END=1365715 GT:DP:GQ:MIN_DP:PL 0/0:9:0:9:0,0,105 +chrX 1365716 . G . . END=1365723 GT:DP:GQ:MIN_DP:PL 0/0:12:30:12:0,30,266 +chrX 1365724 . A . . END=1365724 GT:DP:GQ:MIN_DP:PL 0/0:10:5:10:0,5,238 +chrX 1365725 . G . . END=1365732 GT:DP:GQ:MIN_DP:PL 0/0:12:24:8:0,24,207 +chrX 1365733 . C . . END=1365733 GT:DP:GQ:MIN_DP:PL 0/0:7:0:7:0,0,154 +chrX 1365734 . G . . END=1365741 GT:DP:GQ:MIN_DP:PL 0/0:12:30:12:0,30,297 +chrX 1365742 . A . . END=1365742 GT:DP:GQ:MIN_DP:PL 0/0:12:0:12:0,0,219 +chrX 1365743 . G . . END=1365748 GT:DP:GQ:MIN_DP:PL 0/0:10:27:9:0,27,283 +chrX 1365749 . T . . END=1365749 GT:DP:GQ:MIN_DP:PL 0/0:14:17:14:0,17,366 +chrX 1365750 . G . . END=1365750 GT:DP:GQ:MIN_DP:PL 0/0:13:36:13:0,36,540 +chrX 1365751 . C . . END=1365751 GT:DP:GQ:MIN_DP:PL 0/0:10:0:10:0,0,149 +chrX 1365752 . G . . END=1365759 GT:DP:GQ:MIN_DP:PL 0/0:14:30:13:0,30,287 +chrX 1365760 . A . . END=1365760 GT:DP:GQ:MIN_DP:PL 0/0:15:16:15:0,16,373 +chrX 1365761 . G . . END=1365762 GT:DP:GQ:MIN_DP:PL 0/0:14:20:13:0,20,382 +chrX 1365763 . C . . END=1365764 GT:DP:GQ:MIN_DP:PL 0/0:13:0:13:0,0,178 +chrX 1365765 . G . . END=1365768 GT:DP:GQ:MIN_DP:PL 0/0:14:28:14:0,28,387 +chrX 1365769 . C . . END=1365769 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,273 +chrX 1365770 . G . . END=1365771 GT:DP:GQ:MIN_DP:PL 0/0:13:33:13:0,33,495 +chrX 1365772 . G . . END=1365772 GT:DP:GQ:MIN_DP:PL 0/0:14:7:14:0,7,377 +chrX 1365773 . G . . END=1365777 GT:DP:GQ:MIN_DP:PL 0/0:13:33:13:0,33,495 +chrX 1365778 . A . . END=1365778 GT:DP:GQ:MIN_DP:PL 0/0:12:0:12:0,0,178 +chrX 1365779 . G . . END=1365779 GT:DP:GQ:MIN_DP:PL 0/0:13:33:13:0,33,495 +chrX 1365780 . C . . END=1365780 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,283 +chrX 1365781 . G . . END=1365786 GT:DP:GQ:MIN_DP:PL 0/0:13:33:13:0,33,495 +chrX 1365787 . A . . END=1365787 GT:DP:GQ:MIN_DP:PL 0/0:12:0:12:0,0,249 +chrX 1365788 . G . . END=1365795 GT:DP:GQ:MIN_DP:PL 0/0:14:22:12:0,22,338 +chrX 1365796 . A . . END=1365796 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,233 +chrX 1365797 . G . . END=1365798 GT:DP:GQ:MIN_DP:PL 0/0:11:33:11:0,33,342 +chrX 1365799 . C . . END=1365799 GT:DP:GQ:MIN_DP:PL 0/0:9:0:9:0,0,153 +chrX 1365800 . G . . END=1365807 GT:DP:GQ:MIN_DP:PL 0/0:10:21:9:0,21,193 +chrX 1365808 . C . . END=1365808 GT:DP:GQ:MIN_DP:PL 0/0:9:2:9:0,2,223 +chrX 1365809 . G . . END=1365834 GT:DP:GQ:MIN_DP:PL 0/0:10:27:9:0,27,262 +chrX 1365835 . C . . END=1365835 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,137 +chrX 1365836 . G . . END=1365843 GT:DP:GQ:MIN_DP:PL 0/0:13:33:13:0,33,326 +chrX 1365844 . G . . END=1365844 GT:DP:GQ:MIN_DP:PL 0/0:13:14:13:0,14,352 +chrX 1365845 . G . . END=1365852 GT:DP:GQ:MIN_DP:PL 0/0:14:33:14:0,33,322 +chrX 1365853 . G . . END=1365853 GT:DP:GQ:MIN_DP:PL 0/0:15:10:15:0,10,381 +chrX 1365854 . G . . END=1365858 GT:DP:GQ:MIN_DP:PL 0/0:15:36:15:0,36,540 +chrX 1365859 . A . . END=1365859 GT:DP:GQ:MIN_DP:PL 0/0:13:0:13:0,0,282 +chrX 1365860 . G . . END=1365874 GT:DP:GQ:MIN_DP:PL 0/0:11:24:9:0,24,303 +chrX 1365875 . T . . END=1365875 GT:DP:GQ:MIN_DP:PL 0/0:11:18:11:0,18,293 +chrX 1365876 . G . . END=1365879 GT:DP:GQ:MIN_DP:PL 0/0:10:24:10:0,24,360 +chrX 1365880 . C . . END=1365956 GT:DP:GQ:MIN_DP:PL 0/0:5:0:5:0,0,10 +chrX 1365957 . G . . END=1365957 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,183 +chrX 1365958 . G . . END=1365959 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,148 +chrX 1365960 . G . . END=1365962 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,182 +chrX 1365963 . A . . END=1365963 GT:DP:GQ:MIN_DP:PL 0/0:5:15:5:0,15,123 +chrX 1365964 . G . . END=1365969 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,193 +chrX 1365970 . T . . END=1365970 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,189 +chrX 1365971 . G . . END=1365972 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,193 +chrX 1365973 . G . . END=1365974 GT:DP:GQ:MIN_DP:PL 0/0:8:7:8:0,7,164 +chrX 1365975 . G . . END=1365987 GT:DP:GQ:MIN_DP:PL 0/0:11:27:10:0,27,282 +chrX 1365988 . T . . END=1365988 GT:DP:GQ:MIN_DP:PL 0/0:12:0:12:0,0,278 +chrX 1365989 . G . . END=1366017 GT:DP:GQ:MIN_DP:PL 0/0:11:27:9:0,27,282 +chrX 1366018 . C . . END=1366018 GT:DP:GQ:MIN_DP:PL 0/0:10:15:10:0,15,268 +chrX 1366019 . C . . END=1366032 GT:DP:GQ:MIN_DP:PL 0/0:13:24:12:0,24,342 +chrX 1366033 . T . . END=1366033 GT:DP:GQ:MIN_DP:PL 0/0:11:19:11:0,19,333 +chrX 1366034 . G . . END=1366052 GT:DP:GQ:MIN_DP:PL 0/0:10:21:10:0,21,223 +chrX 1366053 . C . . END=1366053 GT:DP:GQ:MIN_DP:PL 0/0:3:9:3:0,9,84 +chrX 1366054 . G . . END=1366055 GT:DP:GQ:MIN_DP:PL 0/0:8:24:8:0,24,197 +chrX 1366056 . G . . END=1366056 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,148 +chrX 1366057 . G . . END=1366061 GT:DP:GQ:MIN_DP:PL 0/0:9:24:9:0,24,238 +chrX 1366062 . A . . END=1366062 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,168 +chrX 1366063 . G . . END=1366063 GT:DP:GQ:MIN_DP:PL 0/0:10:27:10:0,27,405 +chrX 1366064 . C . . END=1366064 GT:DP:GQ:MIN_DP:PL 0/0:10:15:10:0,15,248 +chrX 1366065 . G . . END=1366071 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,203 +chrX 1366072 . G . . END=1366162 GT:DP:GQ:MIN_DP:PL 0/0:6:0:6:0,0,35 +chrX 1366163 . C . . END=1366169 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,233 +chrX 1366170 . A . . END=1366170 GT:DP:GQ:MIN_DP:PL 0/0:5:15:5:0,15,154 +chrX 1366171 . G . . END=1366192 GT:DP:GQ:MIN_DP:PL 0/0:10:21:8:0,21,193 +chrX 1366193 . C . . END=1366193 GT:DP:GQ:MIN_DP:PL 0/0:9:0:9:0,0,72 +chrX 1366194 . G . . END=1366196 GT:DP:GQ:MIN_DP:PL 0/0:10:27:10:0,27,405 +chrX 1366197 . A . . END=1366197 GT:DP:GQ:MIN_DP:PL 0/0:11:8:11:0,8,262 +chrX 1366198 . G . . END=1366199 GT:DP:GQ:MIN_DP:PL 0/0:11:24:11:0,24,360 +chrX 1366200 . C . . END=1366200 GT:DP:GQ:MIN_DP:PL 0/0:10:0:10:0,0,168 +chrX 1366201 . G . . END=1366205 GT:DP:GQ:MIN_DP:PL 0/0:10:21:10:0,21,223 +chrX 1366206 . C . . END=1366206 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,199 +chrX 1366207 . G . . END=1366207 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,315 +chrX 1366208 . C . . END=1366208 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,178 +chrX 1366209 . G . . END=1366214 GT:DP:GQ:MIN_DP:PL 0/0:10:24:10:0,24,268 +chrX 1366215 . A . . END=1366225 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,129 +chrX 1366226 . C . . END=1366230 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,315 +chrX 1366231 . T . . END=1366231 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,209 +chrX 1366232 . G . . END=1366268 GT:DP:GQ:MIN_DP:PL 0/0:11:21:8:0,21,183 +chrX 1366269 . A . . END=1366269 GT:DP:GQ:MIN_DP:PL 0/0:13:14:13:0,14,342 +chrX 1366270 . G . . END=1366271 GT:DP:GQ:MIN_DP:PL 0/0:15:36:15:0,36,540 +chrX 1366272 . C . . END=1366272 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,204 +chrX 1366273 . G . . END=1366277 GT:DP:GQ:MIN_DP:PL 0/0:15:39:15:0,39,585 +chrX 1366278 . A . . END=1366278 GT:DP:GQ:MIN_DP:PL 0/0:12:1:12:0,1,297 +chrX 1366279 . G . . END=1366280 GT:DP:GQ:MIN_DP:PL 0/0:16:42:16:0,42,630 +chrX 1366281 . C . . END=1366281 GT:DP:GQ:MIN_DP:PL 0/0:12:0:12:0,0,189 +chrX 1366282 . G . . END=1366284 GT:DP:GQ:MIN_DP:PL 0/0:16:45:16:0,45,675 +chrX 1366285 . T . . END=1366285 GT:DP:GQ:MIN_DP:PL 0/0:14:17:14:0,17,397 +chrX 1366286 . G . . END=1366294 GT:DP:GQ:MIN_DP:PL 0/0:14:30:10:0,30,308 +chrX 1366295 . G . . END=1366296 GT:DP:GQ:MIN_DP:PL 0/0:18:19:18:0,19,466 +chrX 1366297 . G . . END=1366366 GT:DP:GQ:MIN_DP:PL 0/0:17:20:12:0,20,301 +chrX 1366367 . G . . END=1366368 GT:DP:GQ:MIN_DP:PL 0/0:12:18:12:0,18,270 +chrX 1366369 . G . . END=1366369 GT:DP:GQ:MIN_DP:PL 0/0:13:21:13:0,21,315 +chrX 1366370 . C . . END=1366370 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,283 +chrX 1366371 . G . . END=1366374 GT:DP:GQ:MIN_DP:PL 0/0:10:24:10:0,24,360 +chrX 1366375 . T . . END=1366375 GT:DP:GQ:MIN_DP:PL 0/0:7:6:7:0,6,154 +chrX 1366376 . G . . END=1366376 GT:DP:GQ:MIN_DP:PL 0/0:9:24:9:0,24,360 +chrX 1366377 . A . . END=1366377 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,168 +chrX 1366378 . G . . END=1366379 GT:DP:GQ:MIN_DP:PL 0/0:10:27:10:0,27,263 +chrX 1366380 . C . . END=1366380 GT:DP:GQ:MIN_DP:PL 0/0:5:0:5:0,0,4 +chrX 1366381 . G . . END=1366385 GT:DP:GQ:MIN_DP:PL 0/0:10:24:10:0,24,228 +chrX 1366386 . C . . END=1366391 GT:DP:GQ:MIN_DP:PL 0/0:9:12:9:0,12,119 +chrX 1366392 . G . . END=1366392 GT:DP:GQ:MIN_DP:PL 0/0:11:21:11:0,21,315 +chrX 1366393 . T . . END=1366393 GT:DP:GQ:MIN_DP:PL 0/0:11:19:11:0,19,253 +chrX 1366394 . G . . END=1366394 GT:DP:GQ:MIN_DP:PL 0/0:12:27:12:0,27,405 +chrX 1366395 . A . . END=1366395 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,158 +chrX 1366396 . G . . END=1366396 GT:DP:GQ:MIN_DP:PL 0/0:13:24:13:0,24,360 +chrX 1366397 . C . . END=1366398 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,193 +chrX 1366399 . G . . END=1366399 GT:DP:GQ:MIN_DP:PL 0/0:13:24:13:0,24,360 +chrX 1366400 . G . . END=1366400 GT:DP:GQ:MIN_DP:PL 0/0:13:14:13:0,14,322 +chrX 1366401 . G . . END=1366403 GT:DP:GQ:MIN_DP:PL 0/0:12:24:12:0,24,360 +chrX 1366404 . C . . END=1366404 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,170 +chrX 1366405 . G . . END=1366405 GT:DP:GQ:MIN_DP:PL 0/0:10:24:10:0,24,360 +chrX 1366406 . C . . END=1366406 GT:DP:GQ:MIN_DP:PL 0/0:9:0:9:0,0,203 +chrX 1366407 . G . . END=1366412 GT:DP:GQ:MIN_DP:PL 0/0:9:24:9:0,24,360 +chrX 1366413 . A . . END=1366413 GT:DP:GQ:MIN_DP:PL 0/0:8:10:8:0,10,199 +chrX 1366414 . G . . END=1366414 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,315 +chrX 1366415 . C . . END=1366416 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,168 +chrX 1366417 . G . . END=1366421 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,193 +chrX 1366422 . C . . END=1366422 GT:DP:GQ:MIN_DP:PL 0/0:3:9:3:0,9,104 +chrX 1366423 . G . . END=1366430 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,193 +chrX 1366431 . A . . END=1366433 GT:DP:GQ:MIN_DP:PL 0/0:6:0:6:0,0,129 +chrX 1366434 . G . . END=1366437 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,315 +chrX 1366438 . T . . END=1366438 GT:DP:GQ:MIN_DP:PL 0/0:8:9:8:0,9,189 +chrX 1366439 . G . . END=1366439 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,315 +chrX 1366440 . C . . END=1366440 GT:DP:GQ:MIN_DP:PL 0/0:5:15:5:0,15,154 +chrX 1366441 . G . . END=1366441 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,315 +chrX 1366442 . C . . END=1366442 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,178 +chrX 1366443 . G . . END=1366451 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,193 +chrX 1366452 . C . . END=1366452 GT:DP:GQ:MIN_DP:PL 0/0:10:0:10:0,0,0 +chrX 1366453 . G . . END=1366457 GT:DP:GQ:MIN_DP:PL 0/0:12:33:12:0,33,495 +chrX 1366458 . C . . END=1366458 GT:DP:GQ:MIN_DP:PL 0/0:7:0:7:0,0,94 +chrX 1366459 . G . . END=1366466 GT:DP:GQ:MIN_DP:PL 0/0:10:24:9:0,24,257 +chrX 1366467 . A . . END=1366467 GT:DP:GQ:MIN_DP:PL 0/0:7:7:7:0,7,154 +chrX 1366468 . G . . END=1366542 GT:DP:GQ:MIN_DP:PL 0/0:16:20:9:0,20,242 +chrX 1366543 . G . . END=1366543 GT:DP:GQ:MIN_DP:PL 0/0:16:13:16:0,13,416 +chrX 1366544 . G . . END=1366544 GT:DP:GQ:MIN_DP:PL 0/0:16:30:16:0,30,450 +chrX 1366545 . G . . END=1366545 GT:DP:GQ:MIN_DP:PL 0/0:14:7:14:0,7,357 +chrX 1366546 . T . . END=1366546 GT:DP:GQ:MIN_DP:PL 0/0:14:36:14:0,36,540 +chrX 1366547 . G . . END=1366547 GT:DP:GQ:MIN_DP:PL 0/0:17:16:17:0,16,430 +chrX 1366548 . A . . END=1366554 GT:DP:GQ:MIN_DP:PL 0/0:20:25:19:0,25,535 +chrX 1366555 . T . . END=1366555 GT:DP:GQ:MIN_DP:PL 0/0:18:19:18:0,19,476 +chrX 1366556 . G . . END=1366561 GT:DP:GQ:MIN_DP:PL 0/0:19:22:18:0,22,437 +chrX 1366562 . G . . END=1366564 GT:DP:GQ:MIN_DP:PL 0/0:19:0:19:0,0,416 +chrX 1366565 . G . . END=1366565 GT:DP:GQ:MIN_DP:PL 0/0:19:22:19:0,22,511 +chrX 1366566 . A . . END=1366569 GT:DP:GQ:MIN_DP:PL 0/0:17:0:17:0,0,14 +chrX 1366570 . G . . END=1366570 GT:DP:GQ:MIN_DP:PL 0/0:19:39:19:0,39,585 +chrX 1366571 . G . . END=1366571 GT:DP:GQ:MIN_DP:PL 0/0:17:16:17:0,16,431 +chrX 1366572 . G . . END=1366575 GT:DP:GQ:MIN_DP:PL 0/0:17:20:15:0,20,392 +chrX 1366576 . G . . END=1366577 GT:DP:GQ:MIN_DP:PL 0/0:15:7:15:0,7,357 +chrX 1366578 . G . . END=1366579 GT:DP:GQ:MIN_DP:PL 0/0:21:28:20:0,28,530 +chrX 1366580 . G . . END=1366580 GT:DP:GQ:MIN_DP:PL 0/0:17:16:17:0,16,431 +chrX 1366581 . G . . END=1366581 GT:DP:GQ:MIN_DP:PL 0/0:20:54:20:0,54,810 +chrX 1366582 . T . . END=1366584 GT:DP:GQ:MIN_DP:PL 0/0:17:7:17:0,7,326 +chrX 1366585 . G . . END=1366585 GT:DP:GQ:MIN_DP:PL 0/0:19:42:19:0,42,491 +chrX 1366586 . C . . END=1366587 GT:DP:GQ:MIN_DP:PL 0/0:17:0:17:0,0,322 +chrX 1366588 . G . . END=1366589 GT:DP:GQ:MIN_DP:PL 0/0:19:25:17:0,25,495 +chrX 1366590 . G . . END=1366590 GT:DP:GQ:MIN_DP:PL 0/0:17:16:17:0,16,431 +chrX 1366591 . T . . END=1366591 GT:DP:GQ:MIN_DP:PL 0/0:15:39:15:0,39,585 +chrX 1366592 . G . . END=1366593 GT:DP:GQ:MIN_DP:PL 0/0:17:0:17:0,0,317 +chrX 1366594 . G . . END=1366594 GT:DP:GQ:MIN_DP:PL 0/0:20:25:20:0,25,505 +chrX 1366595 . C . . END=1366595 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,287 +chrX 1366596 . G . . END=1366597 GT:DP:GQ:MIN_DP:PL 0/0:18:39:18:0,39,466 +chrX 1366598 . T . . END=1366598 GT:DP:GQ:MIN_DP:PL 0/0:15:0:15:0,0,313 +chrX 1366599 . G . . END=1366599 GT:DP:GQ:MIN_DP:PL 0/0:18:42:18:0,42,630 +chrX 1366600 . C . . END=1366604 GT:DP:GQ:MIN_DP:PL 0/0:15:4:15:0,4,302 +chrX 1366605 . G . . END=1366606 GT:DP:GQ:MIN_DP:PL 0/0:15:31:15:0,31,402 +chrX 1366607 . T . . END=1366607 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,277 +chrX 1366608 . G . . END=1366608 GT:DP:GQ:MIN_DP:PL 0/0:16:33:16:0,33,396 +chrX 1366609 . A . . END=1366612 GT:DP:GQ:MIN_DP:PL 0/0:14:7:14:0,7,279 +chrX 1366613 . G . . END=1366613 GT:DP:GQ:MIN_DP:PL 0/0:15:20:15:0,20,341 +chrX 1366614 . G . . END=1366618 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,263 +chrX 1366619 . G . . END=1366624 GT:DP:GQ:MIN_DP:PL 0/0:14:27:14:0,27,405 +chrX 1366625 . T . . END=1366625 GT:DP:GQ:MIN_DP:PL 0/0:10:5:10:0,5,228 +chrX 1366626 . G . . END=1366629 GT:DP:GQ:MIN_DP:PL 0/0:11:27:11:0,27,273 +chrX 1366630 . C . . END=1366633 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,49 +chrX 1366634 . T . . END=1366634 GT:DP:GQ:MIN_DP:PL 0/0:10:24:10:0,24,360 +chrX 1366635 . G . . END=1366638 GT:DP:GQ:MIN_DP:PL 0/0:10:0:10:0,0,189 +chrX 1366639 . G . . END=1366639 GT:DP:GQ:MIN_DP:PL 0/0:11:21:11:0,21,315 +chrX 1366640 . G . . END=1366821 GT:DP:GQ:MIN_DP:PL 0/0:4:0:4:0,0,0 +chrX 1366822 . G . . END=1366823 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,223 +chrX 1366824 . G . . END=1366825 GT:DP:GQ:MIN_DP:PL 0/0:6:15:6:0,15,164 +chrX 1366826 . G . . END=1366826 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,233 +chrX 1366827 . C . . END=1366827 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,199 +chrX 1366828 . G . . END=1366838 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,223 +chrX 1366839 . C . . END=1366839 GT:DP:GQ:MIN_DP:PL 0/0:7:0:7:0,0,104 +chrX 1366840 . G . . END=1366845 GT:DP:GQ:MIN_DP:PL 0/0:10:24:10:0,24,268 +chrX 1366846 . C . . END=1366846 GT:DP:GQ:MIN_DP:PL 0/0:9:0:9:0,0,104 +chrX 1366847 . G . . END=1366851 GT:DP:GQ:MIN_DP:PL 0/0:11:27:10:0,27,405 +chrX 1366852 . C . . END=1366852 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,243 +chrX 1366853 . G . . END=1366858 GT:DP:GQ:MIN_DP:PL 0/0:11:27:9:0,27,313 +chrX 1366859 . T . . END=1366859 GT:DP:GQ:MIN_DP:PL 0/0:13:4:13:0,4,352 +chrX 1366860 . G . . END=1366860 GT:DP:GQ:MIN_DP:PL 0/0:12:36:12:0,36,397 +chrX 1366861 . A . . END=1366861 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,70 +chrX 1366862 . G . . END=1366867 GT:DP:GQ:MIN_DP:PL 0/0:15:20:14:0,20,387 +chrX 1366868 . T . . END=1366868 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,368 +chrX 1366869 . G . . END=1366869 GT:DP:GQ:MIN_DP:PL 0/0:13:39:13:0,39,422 +chrX 1366870 . C . . END=1366871 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,283 +chrX 1366872 . C . . END=1366872 GT:DP:GQ:MIN_DP:PL 0/0:12:21:12:0,21,338 +chrX 1366873 . G . . END=1366873 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,238 +chrX 1366874 . G . . END=1366876 GT:DP:GQ:MIN_DP:PL 0/0:15:31:14:0,31,457 +chrX 1366877 . T . . END=1366877 GT:DP:GQ:MIN_DP:PL 0/0:15:0:15:0,0,352 +chrX 1366878 . G . . END=1366878 GT:DP:GQ:MIN_DP:PL 0/0:17:48:17:0,48,720 +chrX 1366879 . A . . END=1366879 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,337 +chrX 1366880 . G . . END=1366880 GT:DP:GQ:MIN_DP:PL 0/0:17:37:17:0,37,512 +chrX 1366881 . C . . END=1366881 GT:DP:GQ:MIN_DP:PL 0/0:15:10:15:0,10,412 +chrX 1366882 . G . . END=1366885 GT:DP:GQ:MIN_DP:PL 0/0:17:23:17:0,23,447 +chrX 1366886 . T . . END=1366886 GT:DP:GQ:MIN_DP:PL 0/0:14:7:14:0,7,387 +chrX 1366887 . G . . END=1366887 GT:DP:GQ:MIN_DP:PL 0/0:18:48:18:0,48,720 +chrX 1366888 . C . . END=1366888 GT:DP:GQ:MIN_DP:PL 0/0:14:17:14:0,17,377 +chrX 1366889 . G . . END=1366894 GT:DP:GQ:MIN_DP:PL 0/0:18:32:15:0,32,472 +chrX 1366895 . T . . END=1366895 GT:DP:GQ:MIN_DP:PL 0/0:18:19:18:0,19,506 +chrX 1366896 . G . . END=1366896 GT:DP:GQ:MIN_DP:PL 0/0:18:48:18:0,48,720 +chrX 1366897 . A . . END=1366900 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,209 +chrX 1366901 . G . . END=1366903 GT:DP:GQ:MIN_DP:PL 0/0:19:29:18:0,29,486 +chrX 1366904 . T . . END=1366906 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,308 +chrX 1366907 . G . . END=1366907 GT:DP:GQ:MIN_DP:PL 0/0:19:42:19:0,42,500 +chrX 1366908 . C . . END=1366909 GT:DP:GQ:MIN_DP:PL 0/0:19:6:19:0,6,436 +chrX 1366910 . G . . END=1366914 GT:DP:GQ:MIN_DP:PL 0/0:22:31:20:0,31,555 +chrX 1366915 . A . . END=1366915 GT:DP:GQ:MIN_DP:PL 0/0:18:0:18:0,0,437 +chrX 1366916 . G . . END=1366922 GT:DP:GQ:MIN_DP:PL 0/0:21:25:20:0,25,566 +chrX 1366923 . G . . END=1366924 GT:DP:GQ:MIN_DP:PL 0/0:21:0:21:0,0,486 +chrX 1366925 . G . . END=1366932 GT:DP:GQ:MIN_DP:PL 0/0:22:24:21:0,24,521 +chrX 1366933 . A . . END=1366933 GT:DP:GQ:MIN_DP:PL 0/0:21:0:21:0,0,490 +chrX 1366934 . G . . END=1366935 GT:DP:GQ:MIN_DP:PL 0/0:25:57:25:0,57,855 +chrX 1366936 . C . . END=1366936 GT:DP:GQ:MIN_DP:PL 0/0:20:10:20:0,10,434 +chrX 1366937 . G . . END=1366941 GT:DP:GQ:MIN_DP:PL 0/0:28:57:28:0,57,814 +chrX 1366942 . C . . END=1366942 GT:DP:GQ:MIN_DP:PL 0/0:22:0:22:0,0,486 +chrX 1366943 . G . . END=1366944 GT:DP:GQ:MIN_DP:PL 0/0:28:63:28:0,63,945 +chrX 1366945 . G . . END=1366945 GT:DP:GQ:MIN_DP:PL 0/0:24:2:24:0,2,555 +chrX 1366946 . G . . END=1366971 GT:DP:GQ:MIN_DP:PL 0/0:21:28:19:0,28,530 +chrX 1366972 . C . . END=1366972 GT:DP:GQ:MIN_DP:PL 0/0:19:0:19:0,0,242 +chrX 1366973 . G . . END=1366980 GT:DP:GQ:MIN_DP:PL 0/0:24:45:24:0,45,545 +chrX 1366981 . G . . END=1366981 GT:DP:GQ:MIN_DP:PL 0/0:21:14:21:0,14,491 +chrX 1366982 . G . . END=1366986 GT:DP:GQ:MIN_DP:PL 0/0:21:38:21:0,38,590 +chrX 1366987 . A . . END=1366987 GT:DP:GQ:MIN_DP:PL 0/0:18:19:18:0,19,395 +chrX 1366988 . G . . END=1366989 GT:DP:GQ:MIN_DP:PL 0/0:22:33:22:0,33,495 +chrX 1366990 . C . . END=1366990 GT:DP:GQ:MIN_DP:PL 0/0:15:0:15:0,0,232 +chrX 1366991 . G . . END=1366995 GT:DP:GQ:MIN_DP:PL 0/0:21:28:18:0,28,495 +chrX 1366996 . C . . END=1366996 GT:DP:GQ:MIN_DP:PL 0/0:14:7:14:0,7,357 +chrX 1366997 . G . . END=1366998 GT:DP:GQ:MIN_DP:PL 0/0:16:24:16:0,24,360 +chrX 1366999 . G . . END=1366999 GT:DP:GQ:MIN_DP:PL 0/0:12:1:12:0,1,277 +chrX 1367000 . G . . END=1367003 GT:DP:GQ:MIN_DP:PL 0/0:12:24:12:0,24,360 +chrX 1367004 . G . . END=1367004 GT:DP:GQ:MIN_DP:PL 0/0:12:1:12:0,1,287 +chrX 1367005 . A . . END=1367005 GT:DP:GQ:MIN_DP:PL 0/0:9:24:9:0,24,360 +chrX 1367006 . G . . END=1367012 GT:DP:GQ:MIN_DP:PL 0/0:9:0:9:0,0,154 +chrX 1367013 . G . . END=1367016 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,218 +chrX 1367017 . G . . END=1367017 GT:DP:GQ:MIN_DP:PL 0/0:7:0:7:0,0,164 +chrX 1367018 . G . . END=1367024 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,193 +chrX 1367025 . C . . END=1367025 GT:DP:GQ:MIN_DP:PL 0/0:9:2:9:0,2,213 +chrX 1367026 . G . . END=1367040 GT:DP:GQ:MIN_DP:PL 0/0:10:24:9:0,24,252 +chrX 1367041 . A . . END=1367041 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,223 +chrX 1367042 . G . . END=1367043 GT:DP:GQ:MIN_DP:PL 0/0:11:30:11:0,30,450 +chrX 1367044 . C . . END=1367044 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,178 +chrX 1367045 . G . . END=1367067 GT:DP:GQ:MIN_DP:PL 0/0:10:21:10:0,21,273 +chrX 1367068 . A . . END=1367068 GT:DP:GQ:MIN_DP:PL 0/0:11:8:11:0,8,283 +chrX 1367069 . G . . END=1367085 GT:DP:GQ:MIN_DP:PL 0/0:11:27:9:0,27,273 +chrX 1367086 . A . . END=1367086 GT:DP:GQ:MIN_DP:PL 0/0:14:17:14:0,17,347 +chrX 1367087 . G . . END=1367094 GT:DP:GQ:MIN_DP:PL 0/0:15:39:14:0,39,406 +chrX 1367095 . A . . END=1367095 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,163 +chrX 1367096 . G . . END=1367097 GT:DP:GQ:MIN_DP:PL 0/0:13:36:13:0,36,377 +chrX 1367098 . C . . END=1367098 GT:DP:GQ:MIN_DP:PL 0/0:10:0:10:0,0,189 +chrX 1367099 . G . . END=1367103 GT:DP:GQ:MIN_DP:PL 0/0:14:33:14:0,33,352 +chrX 1367104 . C . . END=1367104 GT:DP:GQ:MIN_DP:PL 0/0:12:1:12:0,1,308 +chrX 1367105 . G . . END=1367106 GT:DP:GQ:MIN_DP:PL 0/0:13:39:13:0,39,381 +chrX 1367107 . G . . END=1367107 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,287 +chrX 1367108 . G . . END=1367121 GT:DP:GQ:MIN_DP:PL 0/0:14:33:11:0,33,352 +chrX 1367122 . C . . END=1367122 GT:DP:GQ:MIN_DP:PL 0/0:12:1:12:0,1,308 +chrX 1367123 . G . . END=1367133 GT:DP:GQ:MIN_DP:PL 0/0:15:39:13:0,39,321 +chrX 1367134 . C . . END=1367134 GT:DP:GQ:MIN_DP:PL 0/0:9:12:9:0,12,141 +chrX 1367135 . G . . END=1367169 GT:DP:GQ:MIN_DP:PL 0/0:16:20:15:0,20,401 +chrX 1367170 . C . . END=1367170 GT:DP:GQ:MIN_DP:PL 0/0:12:0:12:0,0,207 +chrX 1367171 . G . . END=1367184 GT:DP:GQ:MIN_DP:PL 0/0:17:26:15:0,26,327 +chrX 1367185 . A . . END=1367185 GT:DP:GQ:MIN_DP:PL 0/0:18:0:18:0,0,357 +chrX 1367186 . G . . END=1367193 GT:DP:GQ:MIN_DP:PL 0/0:20:39:19:0,39,585 +chrX 1367194 . C . . END=1367194 GT:DP:GQ:MIN_DP:PL 0/0:18:19:18:0,19,475 +chrX 1367195 . G . . END=1367196 GT:DP:GQ:MIN_DP:PL 0/0:18:42:18:0,42,630 +chrX 1367197 . C . . END=1367197 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,258 +chrX 1367198 . G . . END=1367202 GT:DP:GQ:MIN_DP:PL 0/0:17:26:16:0,26,461 +chrX 1367203 . A . . END=1367204 GT:DP:GQ:MIN_DP:PL 0/0:14:1:14:0,1,297 +chrX 1367205 . C . . END=1367205 GT:DP:GQ:MIN_DP:PL 0/0:15:36:15:0,36,540 +chrX 1367206 . G . . END=1367206 GT:DP:GQ:MIN_DP:PL 0/0:16:13:16:0,13,426 +chrX 1367207 . G . . END=1367223 GT:DP:GQ:MIN_DP:PL 0/0:14:24:12:0,24,297 +chrX 1367224 . C . . END=1367226 GT:DP:GQ:MIN_DP:PL 0/0:11:12:11:0,12,233 +chrX 1367227 . G . . END=1367240 GT:DP:GQ:MIN_DP:PL 0/0:11:21:11:0,21,233 +chrX 1367241 . C . . END=1367241 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,199 +chrX 1367242 . G . . END=1367242 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,315 +chrX 1367243 . G . . END=1367266 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,94 +chrX 1367267 . G . . END=1367268 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,223 +chrX 1367269 . C . . END=1367269 GT:DP:GQ:MIN_DP:PL 0/0:7:0:7:0,0,114 +chrX 1367270 . G . . END=1367274 GT:DP:GQ:MIN_DP:PL 0/0:9:24:9:0,24,360 +chrX 1367275 . C . . END=1367275 GT:DP:GQ:MIN_DP:PL 0/0:6:4:6:0,4,149 +chrX 1367276 . G . . END=1367276 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,315 +chrX 1367277 . C . . END=1367278 GT:DP:GQ:MIN_DP:PL 0/0:7:0:7:0,0,158 +chrX 1367279 . G . . END=1367283 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,213 +chrX 1367284 . A . . END=1367285 GT:DP:GQ:MIN_DP:PL 0/0:9:0:9:0,0,178 +chrX 1367286 . C . . END=1367294 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,213 +chrX 1367295 . C . . END=1367296 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,199 +chrX 1367297 . G . . END=1367301 GT:DP:GQ:MIN_DP:PL 0/0:9:24:9:0,24,268 +chrX 1367302 . C . . END=1367302 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,189 +chrX 1367303 . G . . END=1367310 GT:DP:GQ:MIN_DP:PL 0/0:10:21:7:0,21,243 +chrX 1367311 . C . . END=1367311 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,188 +chrX 1367312 . G . . END=1367315 GT:DP:GQ:MIN_DP:PL 0/0:10:27:9:0,27,262 +chrX 1367316 . G . . END=1367316 GT:DP:GQ:MIN_DP:PL 0/0:11:19:11:0,19,313 +chrX 1367317 . G . . END=1367319 GT:DP:GQ:MIN_DP:PL 0/0:10:27:9:0,27,262 +chrX 1367320 . A . . END=1367320 GT:DP:GQ:MIN_DP:PL 0/0:9:0:9:0,0,133 +chrX 1367321 . G . . END=1367322 GT:DP:GQ:MIN_DP:PL 0/0:9:24:8:0,24,238 +chrX 1367323 . C . . END=1367323 GT:DP:GQ:MIN_DP:PL 0/0:7:0:7:0,0,144 +chrX 1367324 . G . . END=1367337 GT:DP:GQ:MIN_DP:PL 0/0:10:21:9:0,21,233 +chrX 1367338 . A . . END=1367338 GT:DP:GQ:MIN_DP:PL 0/0:10:0:10:0,0,228 +chrX 1367339 . G . . END=1367346 GT:DP:GQ:MIN_DP:PL 0/0:11:27:11:0,27,283 +chrX 1367347 . A . . END=1367347 GT:DP:GQ:MIN_DP:PL 0/0:7:0:7:0,0,84 +chrX 1367348 . G . . END=1367348 GT:DP:GQ:MIN_DP:PL 0/0:11:33:11:0,33,332 +chrX 1367349 . C . . END=1367353 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,49 +chrX 1367354 . T . . END=1367354 GT:DP:GQ:MIN_DP:PL 0/0:12:21:12:0,21,308 +chrX 1367355 . G . . END=1367356 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,168 +chrX 1367357 . G . . END=1367357 GT:DP:GQ:MIN_DP:PL 0/0:10:30:10:0,30,338 +chrX 1367358 . C . . END=1367358 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,189 +chrX 1367359 . G . . END=1367364 GT:DP:GQ:MIN_DP:PL 0/0:11:30:11:0,30,307 +chrX 1367365 . C . . END=1367366 GT:DP:GQ:MIN_DP:PL 0/0:9:5:9:0,5,219 +chrX 1367367 . C . . END=1367367 GT:DP:GQ:MIN_DP:PL 0/0:10:30:10:0,30,308 +chrX 1367368 . G . . END=1367368 GT:DP:GQ:MIN_DP:PL 0/0:10:16:10:0,16,268 +chrX 1367369 . G . . END=1367369 GT:DP:GQ:MIN_DP:PL 0/0:11:30:11:0,30,450 +chrX 1367370 . G . . END=1367371 GT:DP:GQ:MIN_DP:PL 0/0:11:8:11:0,8,268 +chrX 1367372 . T . . END=1367373 GT:DP:GQ:MIN_DP:PL 0/0:10:27:9:0,27,297 +chrX 1367374 . A . . END=1367374 GT:DP:GQ:MIN_DP:PL 0/0:10:5:10:0,5,288 +chrX 1367375 . G . . END=1367376 GT:DP:GQ:MIN_DP:PL 0/0:11:30:11:0,30,338 +chrX 1367377 . C . . END=1367377 GT:DP:GQ:MIN_DP:PL 0/0:10:0:10:0,0,80 +chrX 1367378 . G . . END=1367398 GT:DP:GQ:MIN_DP:PL 0/0:15:20:12:0,20,308 +chrX 1367399 . T . . END=1367399 GT:DP:GQ:MIN_DP:PL 0/0:13:14:13:0,14,332 +chrX 1367400 . G . . END=1367407 GT:DP:GQ:MIN_DP:PL 0/0:16:23:15:0,23,412 +chrX 1367408 . T . . END=1367408 GT:DP:GQ:MIN_DP:PL 0/0:17:0:17:0,0,402 +chrX 1367409 . G . . END=1367412 GT:DP:GQ:MIN_DP:PL 0/0:15:30:14:0,30,391 +chrX 1367413 . C . . END=1367413 GT:DP:GQ:MIN_DP:PL 0/0:13:0:13:0,0,272 +chrX 1367414 . G . . END=1367434 GT:DP:GQ:MIN_DP:PL 0/0:14:25:11:0,25,291 +chrX 1367435 . T . . END=1367435 GT:DP:GQ:MIN_DP:PL 0/0:14:7:14:0,7,387 +chrX 1367436 . G . . END=1367436 GT:DP:GQ:MIN_DP:PL 0/0:15:45:15:0,45,471 +chrX 1367437 . A . . END=1367437 GT:DP:GQ:MIN_DP:PL 0/0:13:4:13:0,4,312 +chrX 1367438 . G . . END=1367439 GT:DP:GQ:MIN_DP:PL 0/0:16:42:16:0,42,486 +chrX 1367440 . C . . END=1367440 GT:DP:GQ:MIN_DP:PL 0/0:15:0:15:0,0,124 +chrX 1367441 . G . . END=1367457 GT:DP:GQ:MIN_DP:PL 0/0:18:23:16:0,23,447 +chrX 1367458 . G . . END=1367458 GT:DP:GQ:MIN_DP:PL 0/0:17:16:17:0,16,481 +chrX 1367459 . G . . END=1367462 GT:DP:GQ:MIN_DP:PL 0/0:20:45:20:0,45,675 +chrX 1367463 . G . . END=1367464 GT:DP:GQ:MIN_DP:PL 0/0:18:19:18:0,19,476 +chrX 1367465 . G . . END=1367465 GT:DP:GQ:MIN_DP:PL 0/0:19:22:19:0,22,561 +chrX 1367466 . C . . END=1367467 GT:DP:GQ:MIN_DP:PL 0/0:18:0:18:0,0,461 +chrX 1367468 . G . . END=1367470 GT:DP:GQ:MIN_DP:PL 0/0:20:22:19:0,22,551 +chrX 1367471 . T . . END=1367474 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,239 +chrX 1367475 . C . . END=1367490 GT:DP:GQ:MIN_DP:PL 0/0:18:22:17:0,22,436 +chrX 1367491 . A . . END=1367491 GT:DP:GQ:MIN_DP:PL 0/0:20:0:20:0,0,417 +chrX 1367492 . G . . END=1367492 GT:DP:GQ:MIN_DP:PL 0/0:19:22:19:0,22,540 +chrX 1367493 . C . . END=1367494 GT:DP:GQ:MIN_DP:PL 0/0:15:0:15:0,0,173 +chrX 1367495 . G . . END=1367526 GT:DP:GQ:MIN_DP:PL 0/0:22:26:17:0,26,430 +chrX 1367527 . C A, 6.61 . AS_QUALapprox=|14|0;AS_VarDP=13|2|0;BaseQRankSum=-0.200;DP=20;MQRankSum=-1.197;QUALapprox=14;RAW_GT_COUNT=0,1,0;RAW_MQandDP=54608,20;ReadPosRankSum=-0.255;VarDP=15 GT:AD:DP:GQ:PL:SB 0/1:13,2,0:15:14:14,0,346,53,352,405:8,5,2,0 +chrX 1367528 . G . . END=1367540 GT:DP:GQ:MIN_DP:PL 0/0:19:48:19:0,48,535 +chrX 1367541 . C . . END=1367541 GT:DP:GQ:MIN_DP:PL 0/0:19:7:19:0,7,440 +chrX 1367542 . G . . END=1367571 GT:DP:GQ:MIN_DP:PL 0/0:33:33:32:0,33,495 +chrX 1367572 . C A, 249.64 . AS_QUALapprox=|257|0;AS_VarDP=21|12|0;BaseQRankSum=0.191;DP=35;MQRankSum=0.520;QUALapprox=257;RAW_GT_COUNT=0,1,0;RAW_MQandDP=100443,35;ReadPosRankSum=0.225;VarDP=33 GT:AD:DP:GQ:PL:SB 0/1:21,12,0:33:99:257,0,442,316,477,793:17,4,8,4 +chrX 1367573 . G . . END=1367673 GT:DP:GQ:MIN_DP:PL 0/0:26:21:19:0,21,480 +chrX 1367674 . G . . END=1367674 GT:DP:GQ:MIN_DP:PL 0/0:23:0:23:0,0,559 +chrX 1367675 . G . . END=1367682 GT:DP:GQ:MIN_DP:PL 0/0:25:48:25:0,48,659 +chrX 1367683 . G . . END=1367683 GT:DP:GQ:MIN_DP:PL 0/0:24:2:24:0,2,594 +chrX 1367684 . G . . END=1367691 GT:DP:GQ:MIN_DP:PL 0/0:26:44:26:0,44,680 +chrX 1367692 . G . . END=1367692 GT:DP:GQ:MIN_DP:PL 0/0:24:0:24:0,0,0 +chrX 1367693 . G . . END=1367700 GT:DP:GQ:MIN_DP:PL 0/0:25:60:25:0,60,770 +chrX 1367701 . C . . END=1367701 GT:DP:GQ:MIN_DP:PL 0/0:24:0:24:0,0,90 +chrX 1367702 . G . . END=1367709 GT:DP:GQ:MIN_DP:PL 0/0:26:63:26:0,63,769 +chrX 1367710 . G . . END=1367710 GT:DP:GQ:MIN_DP:PL 0/0:25:0:25:0,0,0 +chrX 1367711 . G . . END=1367718 GT:DP:GQ:MIN_DP:PL 0/0:26:37:24:0,37,734 +chrX 1367719 . G . . END=1367719 GT:DP:GQ:MIN_DP:PL 0/0:25:0:25:0,0,332 +chrX 1367720 . G . . END=1367721 GT:DP:GQ:MIN_DP:PL 0/0:28:49:28:0,49,814 +chrX 1367722 . G . . END=1367728 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,183 +chrX 1367729 . G . . END=1367784 GT:DP:GQ:MIN_DP:PL 0/0:38:41:38:0,41,633 +chrX 1367785 . C . . END=1367785 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,726 +chrX 1367786 . T . . END=1367799 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 1367800 . C . . END=1367800 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,933 +chrX 1367801 . G . . END=1368250 GT:DP:GQ:MIN_DP:PL 0/0:60:69:60:0,69,1508 +chrX 1368251 . G A, 854.64 . AS_QUALapprox=|862|0;AS_VarDP=28|32|0;BaseQRankSum=-0.374;DP=63;MQRankSum=0.000;QUALapprox=862;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=-1.401;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:28,32,0:60:99:862,0,743,946,839,1785:13,15,17,15 +chrX 1368252 . A . . END=1368744 GT:DP:GQ:MIN_DP:PL 0/0:53:70:53:0,70,881 +chrX 1368745 . G A, 356.64 . AS_QUALapprox=|364|0;AS_VarDP=16|12|0;BaseQRankSum=0.555;DP=29;MQRankSum=-0.422;QUALapprox=364;RAW_GT_COUNT=0,1,0;RAW_MQandDP=79432,29;ReadPosRankSum=0.488;VarDP=28 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:16,12,0:28:99:0|1:1368745_G_A:364,0,498,411,533,944:1368745:6,10,5,7 +chrX 1368746 . G . . END=1368775 GT:DP:GQ:MIN_DP:PL 0/0:25:57:25:0,57,744 +chrX 1368776 . C G, 269.64 . AS_QUALapprox=|277|0;AS_VarDP=14|8|0;BaseQRankSum=0.600;DP=22;MQRankSum=0.694;QUALapprox=277;RAW_GT_COUNT=0,1,0;RAW_MQandDP=51553,22;ReadPosRankSum=1.082;VarDP=22 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:14,8,0:22:99:0|1:1368745_G_A:277,0,564,319,588,907:1368745:1,13,2,6 +chrX 1368777 . T . . END=1368777 GT:DP:GQ:MIN_DP:PL 0/0:21:54:21:0,54,810 +chrX 1368778 . G T, 237.64 . AS_QUALapprox=|245|0;AS_VarDP=14|7|0;BaseQRankSum=0.000;DP=21;MQRankSum=0.378;QUALapprox=245;RAW_GT_COUNT=0,1,0;RAW_MQandDP=47953,21;ReadPosRankSum=0.971;VarDP=21 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:14,7,0:21:99:0|1:1368745_G_A:245,0,567,287,588,875:1368745:1,13,2,5 +chrX 1368779 . G . . END=1368784 GT:DP:GQ:MIN_DP:PL 0/0:21:48:21:0,48,720 +chrX 1368785 . A G, 195.64 . AS_QUALapprox=|203|0;AS_VarDP=14|6|0;BaseQRankSum=0.246;DP=20;MQRankSum=0.000;QUALapprox=203;RAW_GT_COUNT=0,1,0;RAW_MQandDP=44353,20;ReadPosRankSum=1.097;VarDP=20 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:14,6,0:20:99:0|1:1368745_G_A:203,0,570,245,588,833:1368745:1,13,2,4 +chrX 1368786 . G . . END=1368802 GT:DP:GQ:MIN_DP:PL 0/0:17:27:14:0,27,405 +chrX 1368803 . G A, 172.64 . AS_QUALapprox=|180|0;AS_VarDP=10|5|0;BaseQRankSum=0.000;DP=16;MQRankSum=0.875;QUALapprox=180;RAW_GT_COUNT=0,1,0;RAW_MQandDP=29503,16;ReadPosRankSum=-1.108;VarDP=15 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:10,5,0:15:99:0|1:1368745_G_A:180,0,405,210,420,630:1368745:1,9,1,4 +chrX 1368804 . C . . END=1368820 GT:DP:GQ:MIN_DP:PL 0/0:14:36:14:0,36,417 +chrX 1368821 . T . . END=1368821 GT:DP:GQ:MIN_DP:PL 0/0:12:1:12:0,1,348 +chrX 1368822 . G . . END=1368857 GT:DP:GQ:MIN_DP:PL 0/0:10:27:9:0,27,292 +chrX 1368858 . T . . END=1368858 GT:DP:GQ:MIN_DP:PL 0/0:12:11:12:0,11,348 +chrX 1368859 . G . . END=1368880 GT:DP:GQ:MIN_DP:PL 0/0:10:22:9:0,22,262 +chrX 1368881 . A . . END=1368881 GT:DP:GQ:MIN_DP:PL 0/0:11:19:11:0,19,323 +chrX 1368882 . G . . END=1368904 GT:DP:GQ:MIN_DP:PL 0/0:11:21:10:0,21,307 +chrX 1368905 . G . . END=1368907 GT:DP:GQ:MIN_DP:PL 0/0:8:18:8:0,18,270 +chrX 1368908 . A . . END=1368915 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,315 +chrX 1368916 . A . . END=1368970 GT:DP:GQ:MIN_DP:PL 0/0:6:4:6:0,4,129 +chrX 1368971 . G A, 39.64 . AS_QUALapprox=|47|0;AS_VarDP=2|2|0;BaseQRankSum=0.000;DP=4;MQRankSum=-0.431;QUALapprox=47;RAW_GT_COUNT=0,1,0;RAW_MQandDP=4561,4;ReadPosRankSum=1.383;VarDP=4 GT:AD:DP:GQ:PL:SB 0/1:2,2,0:4:47:47,0,58,53,64,117:1,1,1,1 +chrX 1368972 . G . . END=1368979 GT:DP:GQ:MIN_DP:PL 0/0:6:0:6:0,0,49 +chrX 1368980 . C . . END=1368980 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,193 +chrX 1368981 . C . . END=1368982 GT:DP:GQ:MIN_DP:PL 0/0:7:18:7:0,18,270 +chrX 1368983 . C . . END=1369007 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,248 +chrX 1369008 . C . . END=1369008 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,0 +chrX 1369009 . T . . END=1369009 GT:DP:GQ:MIN_DP:PL 0/0:8:24:8:0,24,238 +chrX 1369010 . G . . END=1369010 GT:DP:GQ:MIN_DP:PL 0/0:9:0:9:0,0,0 +chrX 1369011 . G . . END=1369016 GT:DP:GQ:MIN_DP:PL 0/0:9:24:9:0,24,253 +chrX 1369017 . A . . END=1369017 GT:DP:GQ:MIN_DP:PL 0/0:9:0:9:0,0,0 +chrX 1369018 . G . . END=1369034 GT:DP:GQ:MIN_DP:PL 0/0:10:24:9:0,24,248 +chrX 1369035 . G . . END=1369035 GT:DP:GQ:MIN_DP:PL 0/0:10:0:10:0,0,0 +chrX 1369036 . C . . END=1369051 GT:DP:GQ:MIN_DP:PL 0/0:9:24:9:0,24,293 +chrX 1369052 . G . . END=1369052 GT:DP:GQ:MIN_DP:PL 0/0:9:2:9:0,2,243 +chrX 1369053 . T . . END=1369068 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,237 +chrX 1369069 . C . . END=1369069 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,178 +chrX 1369070 . G . . END=1369071 GT:DP:GQ:MIN_DP:PL 0/0:8:24:8:0,24,258 +chrX 1369072 . C . . END=1369072 GT:DP:GQ:MIN_DP:PL 0/0:7:7:7:0,7,184 +chrX 1369073 . C . . END=1369120 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,237 +chrX 1369121 . C . . END=1369121 GT:DP:GQ:MIN_DP:PL 0/0:9:0:9:0,0,233 +chrX 1369122 . A . . END=1369132 GT:DP:GQ:MIN_DP:PL 0/0:10:21:10:0,21,213 +chrX 1369133 . A . . END=1369133 GT:DP:GQ:MIN_DP:PL 0/0:8:10:8:0,10,219 +chrX 1369134 . G . . END=1369135 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,315 +chrX 1369136 . T . . END=1369137 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,199 +chrX 1369138 . A . . END=1369138 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,213 +chrX 1369139 . G . . END=1369813 GT:DP:GQ:MIN_DP:PL 0/0:2:0:2:0,0,0 +chrX 1369814 . A . . END=1369837 GT:DP:GQ:MIN_DP:PL 0/0:10:21:7:0,21,213 +chrX 1369838 . T . . END=1369838 GT:DP:GQ:MIN_DP:PL 0/0:13:14:13:0,14,281 +chrX 1369839 . G . . END=1369893 GT:DP:GQ:MIN_DP:PL 0/0:15:27:13:0,27,371 +chrX 1369894 . C . . END=1369894 GT:DP:GQ:MIN_DP:PL 0/0:13:0:13:0,0,263 +chrX 1369895 . G . . END=1369935 GT:DP:GQ:MIN_DP:PL 0/0:9:24:9:0,24,228 +chrX 1369936 . T . . END=1369936 GT:DP:GQ:MIN_DP:PL 0/0:9:0:9:0,0,223 +chrX 1369937 . G . . END=1369939 GT:DP:GQ:MIN_DP:PL 0/0:9:27:9:0,27,272 +chrX 1369940 . C . . END=1369940 GT:DP:GQ:MIN_DP:PL 0/0:9:13:9:0,13,244 +chrX 1369941 . A . . END=1369941 GT:DP:GQ:MIN_DP:PL 0/0:9:27:9:0,27,283 +chrX 1369942 . C . . END=1369943 GT:DP:GQ:MIN_DP:PL 0/0:9:0:9:0,0,223 +chrX 1369944 . C . . END=1369946 GT:DP:GQ:MIN_DP:PL 0/0:9:24:9:0,24,293 +chrX 1369947 . G . . END=1369949 GT:DP:GQ:MIN_DP:PL 0/0:9:2:9:0,2,233 +chrX 1369950 . T . . END=1369951 GT:DP:GQ:MIN_DP:PL 0/0:9:24:9:0,24,360 +chrX 1369952 . T . . END=1369983 GT:DP:GQ:MIN_DP:PL 0/0:6:0:6:0,0,139 +chrX 1369984 . T . . END=1369986 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,243 +chrX 1369987 . A . . END=1370197 GT:DP:GQ:MIN_DP:PL 0/0:4:0:4:0,0,25 +chrX 1370198 . T . . END=1370198 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,213 +chrX 1370199 . C . . END=1370204 GT:DP:GQ:MIN_DP:PL 0/0:6:15:6:0,15,153 +chrX 1370205 . C . . END=1370205 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,223 +chrX 1370206 . T . . END=1370206 GT:DP:GQ:MIN_DP:PL 0/0:7:0:7:0,0,153 +chrX 1370207 . G . . END=1370234 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,223 +chrX 1370235 . C . . END=1370235 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,199 +chrX 1370236 . C . . END=1370243 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,223 +chrX 1370244 . C . . END=1370244 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,209 +chrX 1370245 . T . . END=1370275 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,233 +chrX 1370276 . A . . END=1370466 GT:DP:GQ:MIN_DP:PL 0/0:2:0:2:0,0,0 +chrX 1370467 . C . . END=1370540 GT:DP:GQ:MIN_DP:PL 0/0:10:21:7:0,21,233 +chrX 1370541 . C . . END=1370541 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,219 +chrX 1370542 . A . . END=1370546 GT:DP:GQ:MIN_DP:PL 0/0:8:24:8:0,24,227 +chrX 1370547 . C . . END=1370547 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,199 +chrX 1370548 . A . . END=1370548 GT:DP:GQ:MIN_DP:PL 0/0:8:24:8:0,24,248 +chrX 1370549 . C . . END=1370549 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,199 +chrX 1370550 . A . . END=1370550 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,315 +chrX 1370551 . C . . END=1370551 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,199 +chrX 1370552 . A . . END=1370570 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,182 +chrX 1370571 . G . . END=1370571 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,209 +chrX 1370572 . G . . END=1370572 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,315 +chrX 1370573 . A . . END=1370701 GT:DP:GQ:MIN_DP:PL 0/0:2:0:2:0,0,0 +chrX 1370702 . C . . END=1370703 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,213 +chrX 1370704 . C . . END=1370705 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,189 +chrX 1370706 . C . . END=1370714 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,223 +chrX 1370715 . G . . END=1370715 GT:DP:GQ:MIN_DP:PL 0/0:8:10:8:0,10,189 +chrX 1370716 . T . . END=1370722 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,203 +chrX 1370723 . T . . END=1370723 GT:DP:GQ:MIN_DP:PL 0/0:6:4:6:0,4,129 +chrX 1370724 . G . . END=1370733 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,213 +chrX 1370734 . T . . END=1370734 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,199 +chrX 1370735 . G . . END=1370816 GT:DP:GQ:MIN_DP:PL 0/0:15:23:9:0,23,258 +chrX 1370817 . G . . END=1370817 GT:DP:GQ:MIN_DP:PL 0/0:18:0:18:0,0,0 +chrX 1370818 . A . . END=1370861 GT:DP:GQ:MIN_DP:PL 0/0:20:22:15:0,22,406 +chrX 1370862 . A . . END=1370862 GT:DP:GQ:MIN_DP:PL 0/0:15:0:15:0,0,233 +chrX 1370863 . C . . END=1370914 GT:DP:GQ:MIN_DP:PL 0/0:14:24:11:0,24,228 +chrX 1370915 . A . . END=1370915 GT:DP:GQ:MIN_DP:PL 0/0:8:10:8:0,10,209 +chrX 1370916 . T . . END=1370923 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,223 +chrX 1370924 . G . . END=1370924 GT:DP:GQ:MIN_DP:PL 0/0:9:2:9:0,2,233 +chrX 1370925 . T . . END=1370926 GT:DP:GQ:MIN_DP:PL 0/0:9:24:9:0,24,258 +chrX 1370927 . T . . END=1370927 GT:DP:GQ:MIN_DP:PL 0/0:8:10:8:0,10,209 +chrX 1370928 . C . . END=1370928 GT:DP:GQ:MIN_DP:PL 0/0:8:24:8:0,24,238 +chrX 1370929 . T . . END=1370929 GT:DP:GQ:MIN_DP:PL 0/0:8:9:8:0,9,189 +chrX 1370930 . A . . END=1370938 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,213 +chrX 1370939 . A . . END=1373315 GT:DP:GQ:MIN_DP:PL 0/0:0:0:0:0,0,0 +chrX 1373316 . A . . END=1373332 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,243 +chrX 1373333 . C . . END=1373333 GT:DP:GQ:MIN_DP:PL 0/0:9:2:9:0,2,253 +chrX 1373334 . A . . END=1373343 GT:DP:GQ:MIN_DP:PL 0/0:9:27:9:0,27,303 +chrX 1373344 . A . . END=1373344 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,313 +chrX 1373345 . G . . END=1373426 GT:DP:GQ:MIN_DP:PL 0/0:15:33:12:0,33,382 +chrX 1373427 . C . . END=1373427 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,316 +chrX 1373428 . T . . END=1373513 GT:DP:GQ:MIN_DP:PL 0/0:14:24:11:0,24,360 +chrX 1373514 . T . . END=1373514 GT:DP:GQ:MIN_DP:PL 0/0:11:8:11:0,8,283 +chrX 1373515 . T . . END=1373531 GT:DP:GQ:MIN_DP:PL 0/0:10:21:9:0,21,223 +chrX 1373532 . A . . END=1373532 GT:DP:GQ:MIN_DP:PL 0/0:11:8:11:0,8,283 +chrX 1373533 . G . . END=1373533 GT:DP:GQ:MIN_DP:PL 0/0:11:33:11:0,33,312 +chrX 1373534 . A . . END=1373534 GT:DP:GQ:MIN_DP:PL 0/0:10:15:10:0,15,248 +chrX 1373535 . T . . END=1373541 GT:DP:GQ:MIN_DP:PL 0/0:11:30:11:0,30,297 +chrX 1373542 . A . . END=1373542 GT:DP:GQ:MIN_DP:PL 0/0:11:19:11:0,19,283 +chrX 1373543 . G . . END=1373550 GT:DP:GQ:MIN_DP:PL 0/0:11:27:9:0,27,287 +chrX 1373551 . A . . END=1373552 GT:DP:GQ:MIN_DP:PL 0/0:11:19:11:0,19,293 +chrX 1373553 . A . . END=1373553 GT:DP:GQ:MIN_DP:PL 0/0:11:33:11:0,33,332 +chrX 1373554 . A . . END=1373554 GT:DP:GQ:MIN_DP:PL 0/0:11:19:11:0,19,293 +chrX 1373555 . G . . END=1373555 GT:DP:GQ:MIN_DP:PL 0/0:11:33:11:0,33,322 +chrX 1373556 . A . . END=1373556 GT:DP:GQ:MIN_DP:PL 0/0:11:8:11:0,8,283 +chrX 1373557 . A . . END=1373582 GT:DP:GQ:MIN_DP:PL 0/0:11:21:10:0,21,287 +chrX 1373583 . C . . END=1373583 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,178 +chrX 1373584 . A . . END=1373593 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,203 +chrX 1373594 . C . . END=1373596 GT:DP:GQ:MIN_DP:PL 0/0:7:18:7:0,18,189 +chrX 1373597 . T . . END=1373597 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,315 +chrX 1373598 . G . . END=1373721 GT:DP:GQ:MIN_DP:PL 0/0:3:0:3:0,0,0 +chrX 1373722 . T . . END=1373735 GT:DP:GQ:MIN_DP:PL 0/0:9:21:7:0,21,223 +chrX 1373736 . C . . END=1373736 GT:DP:GQ:MIN_DP:PL 0/0:10:5:10:0,5,268 +chrX 1373737 . C . . END=1373737 GT:DP:GQ:MIN_DP:PL 0/0:10:30:10:0,30,328 +chrX 1373738 . A . . END=1373739 GT:DP:GQ:MIN_DP:PL 0/0:10:0:10:0,0,258 +chrX 1373740 . C . . END=1373740 GT:DP:GQ:MIN_DP:PL 0/0:10:27:10:0,27,405 +chrX 1373741 . C . . END=1373743 GT:DP:GQ:MIN_DP:PL 0/0:10:0:10:0,0,258 +chrX 1373744 . T . . END=1373744 GT:DP:GQ:MIN_DP:PL 0/0:10:27:10:0,27,405 +chrX 1373745 . G . . END=1373747 GT:DP:GQ:MIN_DP:PL 0/0:10:0:10:0,0,258 +chrX 1373748 . A . . END=1373748 GT:DP:GQ:MIN_DP:PL 0/0:10:30:10:0,30,308 +chrX 1373749 . T . . END=1373749 GT:DP:GQ:MIN_DP:PL 0/0:10:0:10:0,0,238 +chrX 1373750 . T . . END=1373752 GT:DP:GQ:MIN_DP:PL 0/0:10:30:10:0,30,308 +chrX 1373753 . G . . END=1373753 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,273 +chrX 1373754 . T . . END=1373754 GT:DP:GQ:MIN_DP:PL 0/0:11:33:11:0,33,342 +chrX 1373755 . G . . END=1373756 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,273 +chrX 1373757 . C . . END=1373757 GT:DP:GQ:MIN_DP:PL 0/0:11:33:11:0,33,342 +chrX 1373758 . A . . END=1373759 GT:DP:GQ:MIN_DP:PL 0/0:12:1:12:0,1,308 +chrX 1373760 . C . . END=1373761 GT:DP:GQ:MIN_DP:PL 0/0:13:39:13:0,39,412 +chrX 1373762 . G . . END=1373765 GT:DP:GQ:MIN_DP:PL 0/0:14:4:14:0,4,342 +chrX 1373766 . G . . END=1373766 GT:DP:GQ:MIN_DP:PL 0/0:14:42:14:0,42,447 +chrX 1373767 . A . . END=1373767 GT:DP:GQ:MIN_DP:PL 0/0:14:7:14:0,7,377 +chrX 1373768 . G . . END=1373768 GT:DP:GQ:MIN_DP:PL 0/0:14:28:14:0,28,397 +chrX 1373769 . A . . END=1373769 GT:DP:GQ:MIN_DP:PL 0/0:14:7:14:0,7,377 +chrX 1373770 . T . . END=1373770 GT:DP:GQ:MIN_DP:PL 0/0:14:42:14:0,42,447 +chrX 1373771 . G . . END=1373778 GT:DP:GQ:MIN_DP:PL 0/0:14:7:14:0,7,367 +chrX 1373779 . A . . END=1373781 GT:DP:GQ:MIN_DP:PL 0/0:16:48:16:0,48,496 +chrX 1373782 . C . . END=1373782 GT:DP:GQ:MIN_DP:PL 0/0:14:17:14:0,17,387 +chrX 1373783 . C . . END=1373797 GT:DP:GQ:MIN_DP:PL 0/0:17:45:17:0,45,481 +chrX 1373798 . G . . END=1373798 GT:DP:GQ:MIN_DP:PL 0/0:18:19:18:0,19,486 +chrX 1373799 . A . . END=1373895 GT:DP:GQ:MIN_DP:PL 0/0:22:48:22:0,48,541 +chrX 1373896 . C . . END=1373896 GT:DP:GQ:MIN_DP:PL 0/0:19:7:19:0,7,431 +chrX 1373897 . C . . END=1373957 GT:DP:GQ:MIN_DP:PL 0/0:14:27:11:0,27,372 +chrX 1373958 . G . . END=1373958 GT:DP:GQ:MIN_DP:PL 0/0:11:19:11:0,19,333 +chrX 1373959 . T . . END=1373969 GT:DP:GQ:MIN_DP:PL 0/0:11:24:10:0,24,338 +chrX 1373970 . C . . END=1373970 GT:DP:GQ:MIN_DP:PL 0/0:10:0:10:0,0,278 +chrX 1373971 . C . . END=1374002 GT:DP:GQ:MIN_DP:PL 0/0:12:27:12:0,27,317 +chrX 1374003 . A . . END=1374003 GT:DP:GQ:MIN_DP:PL 0/0:12:11:12:0,11,317 +chrX 1374004 . A . . END=1374060 GT:DP:GQ:MIN_DP:PL 0/0:12:30:12:0,30,297 +chrX 1374061 . A . . END=1374061 GT:DP:GQ:MIN_DP:PL 0/0:13:4:13:0,4,332 +chrX 1374062 . C . . END=1374067 GT:DP:GQ:MIN_DP:PL 0/0:14:25:14:0,25,343 +chrX 1374068 . G . . END=1374068 GT:DP:GQ:MIN_DP:PL 0/0:14:17:14:0,17,377 +chrX 1374069 . G . . END=1374070 GT:DP:GQ:MIN_DP:PL 0/0:14:36:14:0,36,540 +chrX 1374071 . A . . END=1374071 GT:DP:GQ:MIN_DP:PL 0/0:15:10:15:0,10,391 +chrX 1374072 . C . . END=1374073 GT:DP:GQ:MIN_DP:PL 0/0:15:20:15:0,20,412 +chrX 1374074 . C . . END=1374074 GT:DP:GQ:MIN_DP:PL 0/0:15:10:15:0,10,402 +chrX 1374075 . A . . END=1374078 GT:DP:GQ:MIN_DP:PL 0/0:14:28:14:0,28,397 +chrX 1374079 . A . . END=1374079 GT:DP:GQ:MIN_DP:PL 0/0:14:17:14:0,17,387 +chrX 1374080 . G . . END=1374088 GT:DP:GQ:MIN_DP:PL 0/0:12:33:12:0,33,495 +chrX 1374089 . G . . END=1374089 GT:DP:GQ:MIN_DP:PL 0/0:11:19:11:0,19,283 +chrX 1374090 . T . . END=1374105 GT:DP:GQ:MIN_DP:PL 0/0:11:27:11:0,27,332 +chrX 1374106 . A . . END=1374107 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,223 +chrX 1374108 . G . . END=1374126 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,223 +chrX 1374127 . C . . END=1374722 GT:DP:GQ:MIN_DP:PL 0/0:1:0:1:0,0,0 +chrX 1374723 . A . . END=1374724 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,213 +chrX 1374725 . A . . END=1374727 GT:DP:GQ:MIN_DP:PL 0/0:6:7:6:0,7,184 +chrX 1374728 . A . . END=1374728 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,233 +chrX 1374729 . G . . END=1374729 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,178 +chrX 1374730 . A . . END=1374730 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,243 +chrX 1374731 . C . . END=1374732 GT:DP:GQ:MIN_DP:PL 0/0:6:15:6:0,15,154 +chrX 1374733 . A . . END=1374734 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,192 +chrX 1374735 . G . . END=1374735 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,178 +chrX 1374736 . A . . END=1374736 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,243 +chrX 1374737 . C . . END=1374737 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,199 +chrX 1374738 . A . . END=1374811 GT:DP:GQ:MIN_DP:PL 0/0:10:21:8:0,21,207 +chrX 1374812 . T . . END=1374812 GT:DP:GQ:MIN_DP:PL 0/0:8:9:8:0,9,178 +chrX 1374813 . C . . END=1374821 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,217 +chrX 1374822 . C . . END=1374822 GT:DP:GQ:MIN_DP:PL 0/0:7:18:7:0,18,270 +chrX 1374823 . C . . END=1374832 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,182 +chrX 1374833 . C . . END=1374833 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,178 +chrX 1374834 . A . . END=1374835 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,203 +chrX 1374836 . A . . END=1374836 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,189 +chrX 1374837 . C . . END=1374842 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,203 +chrX 1374843 . T . . END=1374843 GT:DP:GQ:MIN_DP:PL 0/0:7:7:7:0,7,174 +chrX 1374844 . C . . END=1374847 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,183 +chrX 1374848 . G . . END=1375952 GT:DP:GQ:MIN_DP:PL 0/0:0:0:0:0,0,0 +chrX 1375953 . G C, 55.31 . AS_QUALapprox=|67|0;AS_VarDP=0|2|0;DP=2;QUALapprox=67;RAW_GT_COUNT=0,0,1;RAW_MQandDP=1629,2;VarDP=2 GT:AD:DP:GQ:PL:SB 1/1:0,2,0:2:6:67,6,0,67,6,67:0,0,2,0 +chrX 1375954 . G . . END=1376250 GT:DP:GQ:MIN_DP:PL 0/0:3:0:3:0,0,45 +chrX 1376251 . A . . END=1376260 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,223 +chrX 1376261 . G . . END=1376261 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,209 +chrX 1376262 . C . . END=1376267 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,223 +chrX 1376268 . G . . END=1376274 GT:DP:GQ:MIN_DP:PL 0/0:7:0:7:0,0,164 +chrX 1376275 . A . . END=1376276 GT:DP:GQ:MIN_DP:PL 0/0:8:24:8:0,24,268 +chrX 1376277 . T . . END=1376279 GT:DP:GQ:MIN_DP:PL 0/0:9:0:9:0,0,233 +chrX 1376280 . G . . END=1376280 GT:DP:GQ:MIN_DP:PL 0/0:8:24:8:0,24,278 +chrX 1376281 . T . . END=1376281 GT:DP:GQ:MIN_DP:PL 0/0:9:0:9:0,0,194 +chrX 1376282 . T . . END=1376282 GT:DP:GQ:MIN_DP:PL 0/0:9:24:9:0,24,360 +chrX 1376283 . T . . END=1376286 GT:DP:GQ:MIN_DP:PL 0/0:9:0:9:0,0,243 +chrX 1376287 . T . . END=1376287 GT:DP:GQ:MIN_DP:PL 0/0:9:24:9:0,24,360 +chrX 1376288 . T . . END=1376295 GT:DP:GQ:MIN_DP:PL 0/0:9:0:9:0,0,184 +chrX 1376296 . G . . END=1376296 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,233 +chrX 1376297 . C . . END=1376481 GT:DP:GQ:MIN_DP:PL 0/0:5:0:5:0,0,80 +chrX 1376482 . C . . END=1376487 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,233 +chrX 1376488 . C . . END=1376491 GT:DP:GQ:MIN_DP:PL 0/0:7:18:7:0,18,270 +chrX 1376492 . C . . END=1376494 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,315 +chrX 1376495 . G . . END=1376495 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,209 +chrX 1376496 . G . . END=1376496 GT:DP:GQ:MIN_DP:PL 0/0:9:24:9:0,24,360 +chrX 1376497 . C . . END=1376497 GT:DP:GQ:MIN_DP:PL 0/0:9:0:9:0,0,243 +chrX 1376498 . T . . END=1376498 GT:DP:GQ:MIN_DP:PL 0/0:9:24:9:0,24,360 +chrX 1376499 . G . . END=1376500 GT:DP:GQ:MIN_DP:PL 0/0:10:0:10:0,0,243 +chrX 1376501 . G . . END=1376501 GT:DP:GQ:MIN_DP:PL 0/0:10:27:10:0,27,405 +chrX 1376502 . G . . END=1376508 GT:DP:GQ:MIN_DP:PL 0/0:10:0:10:0,0,268 +chrX 1376509 . C . . END=1376509 GT:DP:GQ:MIN_DP:PL 0/0:10:30:10:0,30,348 +chrX 1376510 . A . . END=1376510 GT:DP:GQ:MIN_DP:PL 0/0:11:19:11:0,19,333 +chrX 1376511 . A . . END=1376517 GT:DP:GQ:MIN_DP:PL 0/0:16:20:12:0,20,368 +chrX 1376518 . T . . END=1376518 GT:DP:GQ:MIN_DP:PL 0/0:17:16:17:0,16,491 +chrX 1376519 . T . . END=1376520 GT:DP:GQ:MIN_DP:PL 0/0:17:26:17:0,26,491 +chrX 1376521 . T . . END=1376523 GT:DP:GQ:MIN_DP:PL 0/0:17:10:17:0,10,442 +chrX 1376524 . C . . END=1376526 GT:DP:GQ:MIN_DP:PL 0/0:19:22:19:0,22,530 +chrX 1376527 . A . . END=1376527 GT:DP:GQ:MIN_DP:PL 0/0:18:19:18:0,19,526 +chrX 1376528 . G . . END=1376657 GT:DP:GQ:MIN_DP:PL 0/0:21:22:19:0,22,516 +chrX 1376658 . C . . END=1376658 GT:DP:GQ:MIN_DP:PL 0/0:69:0:69:0,0,1582 +chrX 1376659 . C . . END=1376672 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1376673 . A . . END=1376673 GT:DP:GQ:MIN_DP:PL 0/0:59:0:59:0,0,0 +chrX 1376674 . G . . END=1376712 GT:DP:GQ:MIN_DP:PL 0/0:50:93:50:0,93,1395 +chrX 1376713 . A . . END=1376713 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,491 +chrX 1376714 . G . . END=1376716 GT:DP:GQ:MIN_DP:PL 0/0:36:87:36:0,87,1305 +chrX 1376717 . C . . END=1376717 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,823 +chrX 1376718 . T . . END=1376810 GT:DP:GQ:MIN_DP:PL 0/0:16:33:13:0,33,357 +chrX 1376811 . A . . END=1376811 GT:DP:GQ:MIN_DP:PL 0/0:18:19:18:0,19,536 +chrX 1376812 . C . . END=1376812 GT:DP:GQ:MIN_DP:PL 0/0:18:40:18:0,40,547 +chrX 1376813 . A . . END=1376813 GT:DP:GQ:MIN_DP:PL 0/0:17:16:17:0,16,481 +chrX 1376814 . T . . END=1376849 GT:DP:GQ:MIN_DP:PL 0/0:21:25:17:0,25,501 +chrX 1376850 . G . . END=1376850 GT:DP:GQ:MIN_DP:PL 0/0:22:0:22:0,0,557 +chrX 1376851 . A . . END=1376856 GT:DP:GQ:MIN_DP:PL 0/0:23:41:23:0,41,645 +chrX 1376857 . G . . END=1376858 GT:DP:GQ:MIN_DP:PL 0/0:23:0:23:0,0,446 +chrX 1376859 . C . . END=1376864 GT:DP:GQ:MIN_DP:PL 0/0:25:26:24:0,26,680 +chrX 1376865 . G . . END=1376865 GT:DP:GQ:MIN_DP:PL 0/0:26:19:26:0,19,735 +chrX 1376866 . G . . END=1376944 GT:DP:GQ:MIN_DP:PL 0/0:34:28:28:0,28,749 +chrX 1376945 . A C, 349.64 . AS_QUALapprox=|357|0;AS_VarDP=21|13|0;BaseQRankSum=0.338;DP=36;MQRankSum=-1.887;QUALapprox=357;RAW_GT_COUNT=0,1,0;RAW_MQandDP=55338,36;ReadPosRankSum=1.560;VarDP=34 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,13,0:34:99:0|1:1376945_A_C:357,0,548,420,586,1006:1376945:12,9,5,8 +chrX 1376946 . G . . END=1376962 GT:DP:GQ:MIN_DP:PL 0/0:39:51:35:0,51,1057 +chrX 1376963 . G A, 127.64 . AS_QUALapprox=|135|0;AS_VarDP=30|8|0;BaseQRankSum=1.229;DP=38;MQRankSum=-0.349;QUALapprox=135;RAW_GT_COUNT=0,1,0;RAW_MQandDP=61396,38;ReadPosRankSum=0.554;VarDP=38 GT:AD:DP:GQ:PL:SB 0/1:30,8,0:38:99:135,0,1019,224,1042,1267:12,18,5,3 +chrX 1376964 . C . . END=1377061 GT:DP:GQ:MIN_DP:PL 0/0:44:72:44:0,72,1151 +chrX 1377062 . G C, 495.64 . AS_QUALapprox=|503|0;AS_VarDP=21|21|0;BaseQRankSum=-1.901;DP=45;MQRankSum=-3.283;QUALapprox=503;RAW_GT_COUNT=0,1,0;RAW_MQandDP=127896,45;ReadPosRankSum=-0.806;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:21,21,0:42:99:503,0,603,566,666,1232:13,8,13,8 +chrX 1377063 . A . . END=1377104 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 1377105 . C CAG, 1159.60 . AS_QUALapprox=|1167|0;AS_VarDP=33|31|0;BaseQRankSum=1.137;DP=68;MQRankSum=-3.700;QUALapprox=1167;RAW_GT_COUNT=0,1,0;RAW_MQandDP=225291,68;ReadPosRankSum=0.941;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:33,31,0:64:99:1167,0,1252,1267,1345,2612:16,17,14,17 +chrX 1377106 . G . . END=1380099 GT:DP:GQ:MIN_DP:PL 0/0:67:55:67:0,55,1229 +chrX 1380100 . A G, 647.64 . AS_QUALapprox=|655|0;AS_VarDP=19|26|0;BaseQRankSum=-0.178;DP=55;MQRankSum=0.000;QUALapprox=655;RAW_GT_COUNT=0,1,0;RAW_MQandDP=195025,55;ReadPosRankSum=0.299;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:19,26,0:45:99:655,0,462,711,538,1250:11,8,8,18 +chrX 1380101 . T . . END=1380390 GT:DP:GQ:MIN_DP:PL 0/0:30:35:16:0,35,585 +chrX 1380391 . A . . END=1380391 GT:DP:GQ:MIN_DP:PL 0/0:16:13:16:0,13,457 +chrX 1380392 . C . . END=1380402 GT:DP:GQ:MIN_DP:PL 0/0:15:33:15:0,33,467 +chrX 1380403 . C . . END=1380403 GT:DP:GQ:MIN_DP:PL 0/0:14:7:14:0,7,397 +chrX 1380404 . G . . END=1380408 GT:DP:GQ:MIN_DP:PL 0/0:16:30:16:0,30,450 +chrX 1380409 . A . . END=1380410 GT:DP:GQ:MIN_DP:PL 0/0:13:0:13:0,0,317 +chrX 1380411 . G . . END=1380418 GT:DP:GQ:MIN_DP:PL 0/0:14:24:12:0,24,360 +chrX 1380419 . A . . END=1380435 GT:DP:GQ:MIN_DP:PL 0/0:9:0:9:0,0,94 +chrX 1380436 . A . . END=1380436 GT:DP:GQ:MIN_DP:PL 0/0:9:27:9:0,27,273 +chrX 1380437 . A . . END=1380527 GT:DP:GQ:MIN_DP:PL 0/0:6:0:6:0,0,70 +chrX 1380528 . G . . END=1380529 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,233 +chrX 1380530 . A . . END=1380530 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,189 +chrX 1380531 . G . . END=1380533 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,243 +chrX 1380534 . G . . END=1380534 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,188 +chrX 1380535 . G . . END=1380543 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,223 +chrX 1380544 . G A, 95.64 . AS_QUALapprox=|103|0;AS_VarDP=1|3|0;BaseQRankSum=0.000;DP=11;MQRankSum=0.000;QUALapprox=103;RAW_GT_COUNT=0,1,0;RAW_MQandDP=39600,11;ReadPosRankSum=1.150;VarDP=4 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:1,3,0:4:33:0|1:1380544_G_A:103,0,33,106,42,148:1380544:1,0,3,0 +chrX 1380545 . A . . END=1380575 GT:DP:GQ:MIN_DP:PL 0/0:6:12:6:0,12,139 +chrX 1380576 . G T, 123.64 . AS_QUALapprox=|131|0;AS_VarDP=2|4|0;BaseQRankSum=-1.282;DP=11;MQRankSum=0.000;QUALapprox=131;RAW_GT_COUNT=0,1,0;RAW_MQandDP=39600,11;ReadPosRankSum=0.842;VarDP=6 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:2,4,0:6:62:0|1:1380544_G_A:131,0,62,137,74,211:1380544:2,0,4,0 +chrX 1380577 . T . . END=1380581 GT:DP:GQ:MIN_DP:PL 0/0:6:15:6:0,15,133 +chrX 1380582 . G . . END=1380612 GT:DP:GQ:MIN_DP:PL 0/0:10:21:9:0,21,233 +chrX 1380613 . T TGAG, 308.60 . AS_QUALapprox=|316|0;AS_VarDP=3|8|0;BaseQRankSum=-0.374;DP=16;MQRankSum=0.000;QUALapprox=316;RAW_GT_COUNT=0,1,0;RAW_MQandDP=57600,16;ReadPosRankSum=-1.393;VarDP=11 GT:AD:DP:GQ:PL:SB 0/1:3,8,0:11:99:316,0,102,325,126,451:3,0,8,0 +chrX 1380614 . G . . END=1380627 GT:DP:GQ:MIN_DP:PL 0/0:12:30:12:0,30,267 +chrX 1380628 . A . . END=1380628 GT:DP:GQ:MIN_DP:PL 0/0:12:11:12:0,11,318 +chrX 1380629 . A . . END=1380680 GT:DP:GQ:MIN_DP:PL 0/0:14:21:12:0,21,338 +chrX 1380681 . A G, 251.64 . AS_QUALapprox=|259|0;AS_VarDP=9|9|0;BaseQRankSum=0.674;DP=20;MQRankSum=0.000;QUALapprox=259;RAW_GT_COUNT=0,1,0;RAW_MQandDP=72000,20;ReadPosRankSum=2.351;VarDP=18 GT:AD:DP:GQ:PL:SB 0/1:9,9,0:18:99:259,0,247,286,275,560:9,0,9,0 +chrX 1380682 . G . . END=1380876 GT:DP:GQ:MIN_DP:PL 0/0:31:26:19:0,26,534 +chrX 1380877 . A G, 593.64 . AS_QUALapprox=|601|0;AS_VarDP=32|24|0;BaseQRankSum=0.528;DP=59;MQRankSum=0.000;QUALapprox=601;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-0.041;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:32,24,0:56:99:601,0,854,697,926,1623:17,15,14,10 +chrX 1380878 . G . . END=1380941 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 1380942 . T C, 822.64 . AS_QUALapprox=|830|0;AS_VarDP=35|34|0;BaseQRankSum=-0.965;DP=72;MQRankSum=0.000;QUALapprox=830;RAW_GT_COUNT=0,1,0;RAW_MQandDP=259200,72;ReadPosRankSum=-0.462;VarDP=69 GT:AD:DP:GQ:PL:SB 0/1:35,34,0:69:99:830,0,890,935,992,1926:19,16,16,18 +chrX 1380943 . C . . END=1380984 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 1380985 . T G, 862.64 . AS_QUALapprox=|870|0;AS_VarDP=32|34|0;BaseQRankSum=-0.806;DP=69;MQRankSum=0.000;QUALapprox=870;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=-0.302;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:32,34,0:66:99:870,0,810,965,911,1876:17,15,17,17 +chrX 1380986 . T . . END=1381504 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1381505 . C T, 641.64 . AS_QUALapprox=|649|0;AS_VarDP=30|25|0;BaseQRankSum=0.917;DP=55;MQRankSum=0.000;QUALapprox=649;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=0.913;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:30,25,0:55:99:649,0,779,739,854,1593:10,20,7,18 +chrX 1381506 . G . . END=1381947 GT:DP:GQ:MIN_DP:PL 0/0:58:74:58:0,74,946 +chrX 1381948 . G T, 720.64 . AS_QUALapprox=|728|0;AS_VarDP=32|28|0;BaseQRankSum=0.312;DP=60;MQRankSum=0.000;QUALapprox=728;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=0.482;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:32,28,0:60:99:728,0,837,824,921,1745:16,16,15,13 +chrX 1381949 . T . . END=1382221 GT:DP:GQ:MIN_DP:PL 0/0:66:54:66:0,54,1676 +chrX 1382222 . T . . END=1382222 GT:DP:GQ:MIN_DP:PL 0/0:59:3:59:0,3,1653 +chrX 1382223 . A . . END=1382227 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 1382228 . T . . END=1382228 GT:DP:GQ:MIN_DP:PL 0/0:60:0:60:0,0,1459 +chrX 1382229 . G . . END=1382232 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 1382233 . C . . END=1382233 GT:DP:GQ:MIN_DP:PL 0/0:60:0:60:0,0,1489 +chrX 1382234 . C . . END=1382246 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 1382247 . C . . END=1382247 GT:DP:GQ:MIN_DP:PL 0/0:61:0:61:0,0,1156 +chrX 1382248 . C . . END=1382256 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 1382257 . T . . END=1382257 GT:DP:GQ:MIN_DP:PL 0/0:57:0:57:0,0,958 +chrX 1382258 . G . . END=1382273 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 1382274 . G GCC, 1354.60 . AS_QUALapprox=|1362|0;AS_VarDP=21|35|0;BaseQRankSum=-2.013;DP=59;MQRankSum=0.000;QUALapprox=1362;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=0.031;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,35,0:56:99:0|1:1382274_G_GCC:1362,0,749,1425,854,2279:1382274:9,12,19,16 +chrX 1382275 . A ACCGCGCCTGGTCCAAAGTGCCGGGATGACAGGCGTGAGC, 1354.60 . AS_QUALapprox=|1362|0;AS_VarDP=21|35|0;BaseQRankSum=-1.915;DP=59;MQRankSum=0.000;QUALapprox=1362;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-1.314;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,35,0:56:99:0|1:1382274_G_GCC:1362,0,749,1425,854,2279:1382274:9,12,19,16 +chrX 1382276 . C . . END=1382279 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1382280 . A . . END=1382281 GT:DP:GQ:MIN_DP:PL 0/0:53:0:53:0,0,884 +chrX 1382282 . G . . END=1382287 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 1382288 . C . . END=1382288 GT:DP:GQ:MIN_DP:PL 0/0:54:0:54:0,0,1022 +chrX 1382289 . C . . END=1382291 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 1382292 . C . . END=1382292 GT:DP:GQ:MIN_DP:PL 0/0:53:0:53:0,0,1156 +chrX 1382293 . A . . END=1382294 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 1382295 . A . . END=1382295 GT:DP:GQ:MIN_DP:PL 0/0:53:0:53:0,0,1127 +chrX 1382296 . G . . END=1382297 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1382298 . A . . END=1382298 GT:DP:GQ:MIN_DP:PL 0/0:53:0:53:0,0,1236 +chrX 1382299 . G . . END=1382299 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 1382300 . A . . END=1382302 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1187 +chrX 1382303 . T . . END=1382305 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1382306 . G . . END=1382306 GT:DP:GQ:MIN_DP:PL 0/0:55:0:55:0,0,1434 +chrX 1382307 . A . . END=1382307 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1382308 . T . . END=1382308 GT:DP:GQ:MIN_DP:PL 0/0:57:0:57:0,0,1425 +chrX 1382309 . G . . END=1382309 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1382310 . G . . END=1382310 GT:DP:GQ:MIN_DP:PL 0/0:57:0:57:0,0,1524 +chrX 1382311 . G . . END=1382311 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1382312 . A . . END=1382313 GT:DP:GQ:MIN_DP:PL 0/0:56:0:56:0,0,1410 +chrX 1382314 . A . . END=1382315 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 1382316 . G . . END=1382316 GT:DP:GQ:MIN_DP:PL 0/0:57:0:57:0,0,1484 +chrX 1382317 . C . . END=1382317 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 1382318 . C . . END=1382318 GT:DP:GQ:MIN_DP:PL 0/0:55:0:55:0,0,1414 +chrX 1382319 . C . . END=1382320 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1382321 . C . . END=1382326 GT:DP:GQ:MIN_DP:PL 0/0:59:0:59:0,0,1434 +chrX 1382327 . T . . END=1382669 GT:DP:GQ:MIN_DP:PL 0/0:58:32:54:0,32,1285 +chrX 1382670 . A AT, 296.60 . AS_QUALapprox=|304|0;AS_VarDP=14|15|0;BaseQRankSum=-1.342;DP=40;MQRankSum=0.000;QUALapprox=304;RAW_GT_COUNT=0,1,0;RAW_MQandDP=144000,40;ReadPosRankSum=-0.786;VarDP=29 GT:AD:DP:GQ:PL:SB 0/1:14,15,0:29:99:304,0,263,346,308,654:8,6,7,8 +chrX 1382671 . T . . END=1382755 GT:DP:GQ:MIN_DP:PL 0/0:32:73:32:0,73,912 +chrX 1382756 . G GT, 291.60 . AS_QUALapprox=|299|0;AS_VarDP=17|15|0;BaseQRankSum=1.347;DP=35;MQRankSum=0.000;QUALapprox=299;RAW_GT_COUNT=0,1,0;RAW_MQandDP=126000,35;ReadPosRankSum=0.019;VarDP=32 GT:AD:DP:GQ:PL:SB 0/1:17,15,0:32:99:299,0,350,350,395,746:11,6,8,7 +chrX 1382757 . T . . END=1382781 GT:DP:GQ:MIN_DP:PL 0/0:34:47:34:0,47,923 +chrX 1382782 . G C, 344.64 . AS_QUALapprox=|352|0;AS_VarDP=18|15|0;BaseQRankSum=-2.678;DP=34;MQRankSum=0.974;QUALapprox=352;RAW_GT_COUNT=0,1,0;RAW_MQandDP=121936,34;ReadPosRankSum=-1.176;VarDP=33 GT:AD:DP:GQ:PL:SB 0/1:18,15,0:33:99:352,0,517,406,562,967:12,6,6,9 +chrX 1382783 . G . . END=1383036 GT:DP:GQ:MIN_DP:PL 0/0:44:72:44:0,72,1067 +chrX 1383037 . AGTCTCG A, 876.60 . AS_QUALapprox=|884|0;AS_VarDP=24|23|0;BaseQRankSum=-0.848;DP=52;MQRankSum=1.022;QUALapprox=884;RAW_GT_COUNT=0,1,0;RAW_MQandDP=186736,52;ReadPosRankSum=-0.212;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:24,23,0:47:99:884,0,897,956,966,1923:18,6,18,5 +chrX 1383044 . G . . END=1383291 GT:DP:GQ:MIN_DP:PL 0/0:62:68:62:0,68,1515 +chrX 1383292 . GGCCTGT G, 842.60 . AS_QUALapprox=|850|0;AS_VarDP=23|22|0;BaseQRankSum=1.241;DP=45;MQRankSum=-0.978;QUALapprox=850;RAW_GT_COUNT=0,1,0;RAW_MQandDP=160249,45;ReadPosRankSum=0.704;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:23,22,0:45:99:850,0,895,919,961,1880:11,12,8,14 +chrX 1383299 . A . . END=1383327 GT:DP:GQ:MIN_DP:PL 0/0:35:35:33:0,35,868 +chrX 1383328 . T C, 422.64 . AS_QUALapprox=|430|0;AS_VarDP=18|18|0;BaseQRankSum=-1.598;DP=43;MQRankSum=-1.394;QUALapprox=430;RAW_GT_COUNT=0,1,0;RAW_MQandDP=152813,43;ReadPosRankSum=-0.855;VarDP=36 GT:AD:DP:GQ:PL:SB 0/1:18,18,0:36:99:430,0,498,484,551,1036:8,10,8,10 +chrX 1383329 . G . . END=1383385 GT:DP:GQ:MIN_DP:PL 0/0:42:72:42:0,72,978 +chrX 1383386 . A . . END=1383386 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,1185 +chrX 1383387 . A . . END=1383688 GT:DP:GQ:MIN_DP:PL 0/0:60:82:60:0,82,1498 +chrX 1383689 . C T, 1021.64 . AS_QUALapprox=|1029|0;AS_VarDP=28|37|0;BaseQRankSum=0.879;DP=67;MQRankSum=0.000;QUALapprox=1029;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=-0.656;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:28,37,0:65:99:1029,0,708,1113,819,1932:18,10,21,16 +chrX 1383690 . T . . END=1383946 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1383947 . A AG, 1243.60 . AS_QUALapprox=|1251|0;AS_VarDP=36|40|0;BaseQRankSum=-0.426;DP=76;MQRankSum=-1.332;QUALapprox=1251;RAW_GT_COUNT=0,1,0;RAW_MQandDP=270916,76;ReadPosRankSum=1.577;VarDP=76 GT:AD:DP:GQ:PL:SB 0/1:36,40,0:76:99:1251,0,1114,1360,1234,2594:15,21,17,23 +chrX 1383948 . G . . END=1384143 GT:DP:GQ:MIN_DP:PL 0/0:75:94:75:0,94,1355 +chrX 1384144 . A C, 755.64 . AS_QUALapprox=|763|0;AS_VarDP=12|28|0;BaseQRankSum=-1.554;DP=43;MQRankSum=0.000;QUALapprox=763;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151684,43;ReadPosRankSum=2.245;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:12,28,0:40:99:763,0,287,799,371,1170:6,6,14,14 +chrX 1384145 . G . . END=1384473 GT:DP:GQ:MIN_DP:PL 0/0:63:63:63:0,63,1400 +chrX 1384474 . T C, 876.64 . AS_QUALapprox=|884|0;AS_VarDP=21|32|0;BaseQRankSum=1.513;DP=54;MQRankSum=0.000;QUALapprox=884;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=1.565;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:21,32,0:53:99:884,0,446,946,542,1488:14,7,17,15 +chrX 1384475 . C . . END=1384499 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 1384500 . C T, 815.64 . AS_QUALapprox=|823|0;AS_VarDP=23|30|0;BaseQRankSum=0.605;DP=55;MQRankSum=0.000;QUALapprox=823;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=0.386;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:23,30,0:53:99:823,0,565,892,655,1548:14,9,14,16 +chrX 1384501 . G . . END=1385384 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,113,1638 +chrX 1385385 . A G, 271.64 . AS_QUALapprox=|279|0;AS_VarDP=36|15|0;BaseQRankSum=-2.552;DP=56;MQRankSum=0.000;QUALapprox=279;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-1.448;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:36,15,0:51:99:279,0,997,386,1042,1428:15,21,8,7 +chrX 1385386 . A . . END=1387219 GT:DP:GQ:MIN_DP:PL 0/0:61:80:61:0,80,1400 +chrX 1387220 . T C, 977.64 . AS_QUALapprox=|985|0;AS_VarDP=31|36|0;BaseQRankSum=-0.049;DP=68;MQRankSum=0.000;QUALapprox=985;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=0.862;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:31,36,0:67:99:985,0,826,1078,934,2013:14,17,22,14 +chrX 1387221 . A . . END=1387424 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 1387425 . C G, 891.64 . AS_QUALapprox=|899|0;AS_VarDP=34|32|0;BaseQRankSum=1.540;DP=68;MQRankSum=0.000;QUALapprox=899;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=0.873;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:34,32,0:66:99:899,0,903,1001,1000,2001:20,14,22,10 +chrX 1387426 . G . . END=1388050 GT:DP:GQ:MIN_DP:PL 0/0:69:84:69:0,84,1433 +chrX 1388051 . A G, 811.64 . AS_QUALapprox=|819|0;AS_VarDP=29|32|0;BaseQRankSum=-0.759;DP=63;MQRankSum=0.453;QUALapprox=819;RAW_GT_COUNT=0,1,0;RAW_MQandDP=214664,63;ReadPosRankSum=0.282;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:29,32,0:61:99:819,0,761,906,856,1762:11,18,11,21 +chrX 1388052 . T . . END=1388475 GT:DP:GQ:MIN_DP:PL 0/0:62:78:62:0,78,1400 +chrX 1388476 . T . . END=1388476 GT:DP:GQ:MIN_DP:PL 0/0:69:0:69:0,0,1683 +chrX 1388477 . T . . END=1388619 GT:DP:GQ:MIN_DP:PL 0/0:51:31:48:0,31,1182 +chrX 1388620 . T . . END=1388620 GT:DP:GQ:MIN_DP:PL 0/0:52:0:52:0,0,1241 +chrX 1388621 . G . . END=1388631 GT:DP:GQ:MIN_DP:PL 0/0:53:32:53:0,32,1356 +chrX 1388632 . A . . END=1388632 GT:DP:GQ:MIN_DP:PL 0/0:52:0:52:0,0,1258 +chrX 1388633 . T . . END=1388678 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 1388679 . T . . END=1388679 GT:DP:GQ:MIN_DP:PL 0/0:64:0:64:0,0,1607 +chrX 1388680 . G . . END=1388918 GT:DP:GQ:MIN_DP:PL 0/0:55:31:54:0,31,1422 +chrX 1388919 . G . . END=1388919 GT:DP:GQ:MIN_DP:PL 0/0:55:12:55:0,12,1414 +chrX 1388920 . G . . END=1389082 GT:DP:GQ:MIN_DP:PL 0/0:54:35:53:0,35,1340 +chrX 1389083 . G A, 788.64 . AS_QUALapprox=|796|0;AS_VarDP=26|31|0;BaseQRankSum=-0.886;DP=59;MQRankSum=-0.881;QUALapprox=796;RAW_GT_COUNT=0,1,0;RAW_MQandDP=210400,59;ReadPosRankSum=-1.018;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:26,31,0:57:99:796,0,658,874,751,1625:12,14,17,14 +chrX 1389084 . C . . END=1389173 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,118,1403 +chrX 1389174 . A G, 531.64 . AS_QUALapprox=|539|0;AS_VarDP=32|21|0;BaseQRankSum=-0.530;DP=56;MQRankSum=0.000;QUALapprox=539;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=0.409;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:32,21,0:53:99:539,0,923,636,986,1622:18,14,8,13 +chrX 1389175 . G . . END=1389430 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 1389431 . G A, 627.64 . AS_QUALapprox=|635|0;AS_VarDP=29|24|0;BaseQRankSum=-0.216;DP=54;MQRankSum=0.000;QUALapprox=635;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=-0.322;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:29,24,0:53:99:635,0,793,722,865,1587:10,19,14,10 +chrX 1389432 . A . . END=1389689 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1389690 . T C, 669.64 . AS_QUALapprox=|677|0;AS_VarDP=25|24|0;BaseQRankSum=1.012;DP=50;MQRankSum=0.000;QUALapprox=677;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=0.370;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:25,24,0:49:99:677,0,692,752,764,1516:14,11,9,15 +chrX 1389691 . G . . END=1390680 GT:DP:GQ:MIN_DP:PL 0/0:58:95:58:0,95,1221 +chrX 1390681 . G A, 412.64 . AS_QUALapprox=|420|0;AS_VarDP=28|18|0;BaseQRankSum=0.396;DP=51;MQRankSum=0.000;QUALapprox=420;RAW_GT_COUNT=0,1,0;RAW_MQandDP=182025,51;ReadPosRankSum=-1.149;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:28,18,0:46:99:420,0,644,506,697,1204:15,13,8,10 +chrX 1390682 . C . . END=1390725 GT:DP:GQ:MIN_DP:PL 0/0:50:97:50:0,97,1424 +chrX 1390726 . C . . END=1390726 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,615 +chrX 1390727 . G . . END=1390753 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 1390754 . G . . END=1390754 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,766 +chrX 1390755 . G . . END=1390816 GT:DP:GQ:MIN_DP:PL 0/0:63:96:63:0,96,1638 +chrX 1390817 . A AAATTTT, 0.02 . AS_QUALapprox=|2|0;AS_VarDP=30|5|0;BaseQRankSum=0.342;DP=61;MQRankSum=0.777;QUALapprox=2;RAW_GT_COUNT=0,1,0;RAW_MQandDP=213579,61;ReadPosRankSum=0.519;VarDP=35 GT:AD:DP:GQ:PL:SB 0/1:30,5,0:35:2:2,0,979,111,994,1105:18,12,3,2 +chrX 1390818 . C A,CTTAGAGACGGGGTCTTGCTATGTTGCCCTGGCTGGTCTCAAACTCCTGAGCTCAAACGATCCTCCCTGGGCCTCTCCGAGTGCTGGGACACCCCGCCCTGCTAAGTTTAAAAA, 762.60 . AS_QUALapprox=|711|770|0;AS_VarDP=29|1|5|0;BaseQRankSum=0.296;DP=61;MQRankSum=0.857;QUALapprox=770;RAW_GT_COUNT=0,1,0;RAW_MQandDP=213579,61;ReadPosRankSum=-1.095;VarDP=35 GT:AD:DP:GQ:PL:SB 0/2:29,1,5,0:35:59:770,59,798,0,743,868,525,900,905,1337:18,11,3,3 +chrX 1390819 . T . . END=1390878 GT:DP:GQ:MIN_DP:PL 0/0:58:22:55:0,22,1545 +chrX 1390879 . G . . END=1390879 GT:DP:GQ:MIN_DP:PL 0/0:57:2:57:0,2,1402 +chrX 1390880 . G . . END=1391139 GT:DP:GQ:MIN_DP:PL 0/0:62:37:60:0,37,1668 +chrX 1391140 . A AT, 446.60 . AS_QUALapprox=|454|0;AS_VarDP=31|21|0;BaseQRankSum=0.398;DP=62;MQRankSum=0.000;QUALapprox=454;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=0.896;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:31,21,0:52:99:454,0,770,547,833,1381:17,14,10,11 +chrX 1391141 . T . . END=1391294 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1391295 . C G, 359.64 . AS_QUALapprox=|367|0;AS_VarDP=34|17|0;BaseQRankSum=-1.786;DP=53;MQRankSum=0.000;QUALapprox=367;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=-0.270;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:34,17,0:51:99:367,0,969,470,1020,1489:14,20,8,9 +chrX 1391296 . G . . END=1391743 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,119,1737 +chrX 1391744 . C T, 1047.64 . AS_QUALapprox=|1055|0;AS_VarDP=40|40|0;BaseQRankSum=0.466;DP=84;MQRankSum=0.000;QUALapprox=1055;RAW_GT_COUNT=0,1,0;RAW_MQandDP=302400,84;ReadPosRankSum=0.193;VarDP=80 GT:AD:DP:GQ:PL:SB 0/1:40,40,0:80:99:1055,0,1081,1176,1200,2376:17,23,25,15 +chrX 1391745 . G . . END=1392190 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1392191 . T C, 906.64 . AS_QUALapprox=|914|0;AS_VarDP=32|34|0;BaseQRankSum=1.494;DP=66;MQRankSum=0.000;QUALapprox=914;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=1.232;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:32,34,0:66:99:914,0,824,1010,925,1936:21,11,18,16 +chrX 1392192 . C . . END=1392219 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1392220 . A G, 779.64 . AS_QUALapprox=|787|0;AS_VarDP=32|32|0;BaseQRankSum=-0.989;DP=69;MQRankSum=0.000;QUALapprox=787;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=0.685;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:32,32,0:64:99:787,0,791,881,887,1768:20,12,18,14 +chrX 1392221 . C . . END=1392434 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1392435 . A G, 1059.64 . AS_QUALapprox=|1067|0;AS_VarDP=32|39|0;BaseQRankSum=0.646;DP=76;MQRankSum=-0.878;QUALapprox=1067;RAW_GT_COUNT=0,1,0;RAW_MQandDP=272916,76;ReadPosRankSum=-1.578;VarDP=71 GT:AD:DP:GQ:PL:SB 0/1:32,39,0:71:99:1067,0,829,1164,946,2110:16,16,20,19 +chrX 1392436 . C . . END=1392610 GT:DP:GQ:MIN_DP:PL 0/0:82:99:82:0,120,1800 +chrX 1392611 . C T, 986.64 . AS_QUALapprox=|994|0;AS_VarDP=31|40|0;BaseQRankSum=-1.184;DP=73;MQRankSum=0.000;QUALapprox=994;RAW_GT_COUNT=0,1,0;RAW_MQandDP=262800,73;ReadPosRankSum=0.684;VarDP=71 GT:AD:DP:GQ:PL:SB 0/1:31,40,0:71:99:994,0,806,1087,924,2012:15,16,27,13 +chrX 1392612 . A . . END=1392768 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,120,1800 +chrX 1392769 . TG T, 638.60 . AS_QUALapprox=|646|0;AS_VarDP=24|27|0;BaseQRankSum=-0.648;DP=62;MQRankSum=0.000;QUALapprox=646;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=0.010;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:24,27,0:51:99:646,0,541,718,622,1340:10,14,16,11 +chrX 1392771 . G . . END=1392894 GT:DP:GQ:MIN_DP:PL 0/0:67:76:67:0,76,1645 +chrX 1392895 . C T, 640.64 . AS_QUALapprox=|648|0;AS_VarDP=25|27|0;BaseQRankSum=-2.670;DP=54;MQRankSum=0.000;QUALapprox=648;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=1.832;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:25,27,0:52:99:648,0,704,723,784,1507:8,17,7,20 +chrX 1392896 . T . . END=1392940 GT:DP:GQ:MIN_DP:PL 0/0:41:47:41:0,47,877 +chrX 1392941 . C G, 683.64 . AS_QUALapprox=|691|0;AS_VarDP=13|19|0;BaseQRankSum=-0.366;DP=35;MQRankSum=-1.441;QUALapprox=691;RAW_GT_COUNT=0,1,0;RAW_MQandDP=121010,35;ReadPosRankSum=-0.230;VarDP=32 GT:AD:DP:GQ:PL:SB 0/1:13,19,0:32:99:691,0,411,730,468,1198:5,8,2,17 +chrX 1392942 . T . . END=1392949 GT:DP:GQ:MIN_DP:PL 0/0:30:57:29:0,57,838 +chrX 1392950 . TCCTCCCTC T,*,CCCTCCCTC, 467.08 . AS_QUALapprox=|165|0|658|0;AS_VarDP=1|4|0|8|0;BaseQRankSum=-0.614;DP=26;MQRankSum=-0.361;QUALapprox=788;RAW_GT_COUNT=0,0,1;RAW_MQandDP=88610,26;ReadPosRankSum=0.535;VarDP=13 GT:AD:DP:GQ:PL:SB 1/3:1,4,0,8,0:13:99:788,623,665,448,332,640,130,0,306,285,805,689,668,336,1025:1,0,0,12 +chrX 1392959 . C . . END=1392961 GT:DP:GQ:MIN_DP:PL 0/0:23:51:23:0,51,765 +chrX 1392962 . C CCCTCCCGCCTCCCT,CCCTCCCGCCTCCCTCCTCCCGCCTCCCGCCTCCCT, 100.60 . AS_QUALapprox=|0|108|0;AS_VarDP=5|0|4|0;BaseQRankSum=0.497;DP=25;MQRankSum=-1.981;QUALapprox=108;RAW_GT_COUNT=0,1,0;RAW_MQandDP=82779,25;ReadPosRankSum=1.180;VarDP=9 GT:AD:DP:GQ:PL:SB 0/2:5,0,4,0:9:99:108,148,595,0,234,372,158,503,322,560:1,4,0,4 +chrX 1392963 . C . . END=1392979 GT:DP:GQ:MIN_DP:PL 0/0:23:30:22:0,30,450 +chrX 1392980 . T TCCCGCCTCCCGCCTCCCTCCCTCCC,TCCCTCCTCCCTCCCTCCCGCCTCCCGCCTCCCGCCTCCCTCCCTCCC,TCCCTCCTCCCGCCTCCCGCCTCCCTCCTCCCTCCCTCCCGCCTCCCGCCTCCCGCCTCCCTCCCTCCC, 366.60 . AS_QUALapprox=|374|116|202|0;AS_VarDP=7|4|0|0|0;BaseQRankSum=1.097;DP=29;MQRankSum=-2.253;QUALapprox=374;RAW_GT_COUNT=0,1,0;RAW_MQandDP=92875,29;ReadPosRankSum=-0.269;VarDP=11 GT:AD:DP:GQ:PL:SB 0/1:7,4,0,0,0:11:99:374,0,248,258,293,914,172,288,819,811,257,294,906,820,905:0,7,0,4 +chrX 1392981 . C . . END=1392990 GT:DP:GQ:MIN_DP:PL 0/0:37:44:37:0,44,855 +chrX 1392991 . T . . END=1392992 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,481 +chrX 1392993 . C . . END=1393005 GT:DP:GQ:MIN_DP:PL 0/0:35:47:35:0,47,855 +chrX 1393006 . T . . END=1393006 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,595 +chrX 1393007 . C . . END=1393012 GT:DP:GQ:MIN_DP:PL 0/0:32:57:32:0,57,855 +chrX 1393013 . T . . END=1393013 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,634 +chrX 1393014 . C . . END=1393022 GT:DP:GQ:MIN_DP:PL 0/0:29:28:29:0,28,799 +chrX 1393023 . T . . END=1393023 GT:DP:GQ:MIN_DP:PL 0/0:30:6:30:0,6,763 +chrX 1393024 . C . . END=1393025 GT:DP:GQ:MIN_DP:PL 0/0:29:41:29:0,41,833 +chrX 1393026 . T . . END=1393028 GT:DP:GQ:MIN_DP:PL 0/0:27:0:27:0,0,577 +chrX 1393029 . C . . END=1393029 GT:DP:GQ:MIN_DP:PL 0/0:30:78:30:0,78,1170 +chrX 1393030 . C . . END=1393030 GT:DP:GQ:MIN_DP:PL 0/0:29:18:29:0,18,859 +chrX 1393031 . C . . END=1393031 GT:DP:GQ:MIN_DP:PL 0/0:30:55:30:0,55,943 +chrX 1393032 . T . . END=1393034 GT:DP:GQ:MIN_DP:PL 0/0:29:0:29:0,0,725 +chrX 1393035 . C . . END=1393036 GT:DP:GQ:MIN_DP:PL 0/0:28:78:28:0,78,1170 +chrX 1393037 . G . . END=1393038 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,710 +chrX 1393039 . C . . END=1393039 GT:DP:GQ:MIN_DP:PL 0/0:29:75:29:0,75,1125 +chrX 1393040 . T . . END=1393042 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,799 +chrX 1393043 . C . . END=1393043 GT:DP:GQ:MIN_DP:PL 0/0:30:78:30:0,78,1170 +chrX 1393044 . T . . END=1393045 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,819 +chrX 1393046 . C . . END=1393047 GT:DP:GQ:MIN_DP:PL 0/0:33:81:33:0,81,1215 +chrX 1393048 . G . . END=1393048 GT:DP:GQ:MIN_DP:PL 0/0:28:15:28:0,15,794 +chrX 1393049 . C . . END=1393051 GT:DP:GQ:MIN_DP:PL 0/0:32:78:32:0,78,1170 +chrX 1393052 . G . . END=1393052 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,724 +chrX 1393053 . C . . END=1393127 GT:DP:GQ:MIN_DP:PL 0/0:30:38:29:0,38,774 +chrX 1393128 . G C, 1001.06 . AS_QUALapprox=|1015|0;AS_VarDP=0|31|0;DP=39;QUALapprox=1015;RAW_GT_COUNT=0,0,1;RAW_MQandDP=138400,39;VarDP=31 GT:AD:DP:GQ:PL:SB 1/1:0,31,0:31:93:1015,93,0,1015,93,1015:0,0,16,15 +chrX 1393129 . T . . END=1393207 GT:DP:GQ:MIN_DP:PL 0/0:33:32:32:0,32,744 +chrX 1393208 . G C, 588.64 . AS_QUALapprox=|596|0;AS_VarDP=16|22|0;BaseQRankSum=1.035;DP=45;MQRankSum=0.000;QUALapprox=596;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=0.444;VarDP=38 GT:AD:DP:GQ:PL:SB 0/1:16,22,0:38:99:596,0,391,644,457,1100:12,4,17,5 +chrX 1393209 . T . . END=1393232 GT:DP:GQ:MIN_DP:PL 0/0:37:50:37:0,50,1011 +chrX 1393233 . T TCTC, 765.60 . AS_QUALapprox=|773|0;AS_VarDP=18|20|0;BaseQRankSum=0.028;DP=46;MQRankSum=0.000;QUALapprox=773;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=0.892;VarDP=38 GT:AD:DP:GQ:PL:SB 0/1:18,20,0:38:99:773,0,696,828,756,1583:14,4,15,5 +chrX 1393234 . C . . END=1393382 GT:DP:GQ:MIN_DP:PL 0/0:55:56:55:0,56,1134 +chrX 1393383 . C A, 1739.06 . AS_QUALapprox=|1753|0;AS_VarDP=1|59|0;BaseQRankSum=1.901;DP=66;MQRankSum=0.000;QUALapprox=1753;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;ReadPosRankSum=0.982;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:1,59,0:60:99:1753,166,0,1756,173,1763:1,0,35,24 +chrX 1393384 . C . . END=1393644 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,99,1654 +chrX 1393645 . G C, 2868.06 . AS_QUALapprox=|2882|0;AS_VarDP=0|78|0;DP=79;QUALapprox=2882;RAW_GT_COUNT=0,0,1;RAW_MQandDP=281425,79;VarDP=78 GT:AD:DP:GQ:PL:SB 1/1:0,78,0:78:99:2882,234,0,2882,234,2882:0,0,31,47 +chrX 1393646 . G . . END=1393646 GT:DP:GQ:MIN_DP:PL 0/0:78:99:78:0,120,1800 +chrX 1393647 . A G, 855.64 . AS_QUALapprox=|863|0;AS_VarDP=42|36|0;BaseQRankSum=-1.508;DP=79;MQRankSum=0.000;QUALapprox=863;RAW_GT_COUNT=0,1,0;RAW_MQandDP=281425,79;ReadPosRankSum=-0.612;VarDP=78 GT:AD:DP:GQ:PL:SB 0/1:42,36,0:78:99:863,0,1142,989,1249,2237:14,28,17,19 +chrX 1393648 . C . . END=1393679 GT:DP:GQ:MIN_DP:PL 0/0:73:99:73:0,120,1800 +chrX 1393680 . A G, 1040.64 . AS_QUALapprox=|1048|0;AS_VarDP=36|38|0;BaseQRankSum=-0.258;DP=78;MQRankSum=0.000;QUALapprox=1048;RAW_GT_COUNT=0,1,0;RAW_MQandDP=280800,78;ReadPosRankSum=0.027;VarDP=74 GT:AD:DP:GQ:PL:SB 0/1:36,38,0:74:99:1048,0,982,1157,1097,2253:15,21,11,27 +chrX 1393681 . G . . END=1393825 GT:DP:GQ:MIN_DP:PL 0/0:56:70:56:0,70,1375 +chrX 1393826 . G . . END=1393826 GT:DP:GQ:MIN_DP:PL 0/0:54:18:54:0,18,1357 +chrX 1393827 . T . . END=1393849 GT:DP:GQ:MIN_DP:PL 0/0:59:91:59:0,91,1633 +chrX 1393850 . C CT, 1102.03 . AS_QUALapprox=|1116|0;AS_VarDP=0|43|0;DP=52;QUALapprox=1116;RAW_GT_COUNT=0,0,1;RAW_MQandDP=184325,52;VarDP=43 GT:AD:DP:GQ:PL:SB 1/1:0,43,0:43:99:1116,128,0,1116,129,1116:0,0,20,23 +chrX 1393851 . T . . END=1393862 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1393863 . G . . END=1393863 GT:DP:GQ:MIN_DP:PL 0/0:55:0:55:0,0,1244 +chrX 1393864 . A . . END=1395195 GT:DP:GQ:MIN_DP:PL 0/0:53:43:53:0,43,1036 +chrX 1395196 . A G, 698.64 . AS_QUALapprox=|706|0;AS_VarDP=27|27|0;BaseQRankSum=-0.992;DP=56;MQRankSum=0.000;QUALapprox=706;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-1.523;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:27,27,0:54:99:706,0,736,787,817,1605:14,13,16,11 +chrX 1395197 . G . . END=1396112 GT:DP:GQ:MIN_DP:PL 0/0:59:47:59:0,47,1111 +chrX 1396113 . TTTGC T, 618.60 . AS_QUALapprox=|626|0;AS_VarDP=26|17|0;BaseQRankSum=0.880;DP=47;MQRankSum=0.000;QUALapprox=626;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=-1.859;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:26,17,0:43:99:626,0,1040,704,1092,1796:11,15,5,12 +chrX 1396118 . T . . END=1397220 GT:DP:GQ:MIN_DP:PL 0/0:51:34:48:0,34,1180 +chrX 1397221 . A C, 807.64 . AS_QUALapprox=|815|0;AS_VarDP=18|29|0;BaseQRankSum=-1.136;DP=50;MQRankSum=0.000;QUALapprox=815;RAW_GT_COUNT=0,1,0;RAW_MQandDP=178900,50;ReadPosRankSum=-0.525;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:18,29,0:47:99:815,0,474,869,562,1431:11,7,17,12 +chrX 1397222 . G . . END=1397514 GT:DP:GQ:MIN_DP:PL 0/0:56:85:56:0,85,1394 +chrX 1397515 . T . . END=1397515 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,887 +chrX 1397516 . C . . END=1397551 GT:DP:GQ:MIN_DP:PL 0/0:35:28:29:0,28,859 +chrX 1397552 . A . . END=1397552 GT:DP:GQ:MIN_DP:PL 0/0:31:19:31:0,19,859 +chrX 1397553 . C . . END=1397554 GT:DP:GQ:MIN_DP:PL 0/0:32:24:31:0,24,868 +chrX 1397555 . T . . END=1397555 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,824 +chrX 1397556 . C . . END=1397561 GT:DP:GQ:MIN_DP:PL 0/0:33:34:31:0,34,858 +chrX 1397562 . T . . END=1397563 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,833 +chrX 1397564 . A . . END=1398312 GT:DP:GQ:MIN_DP:PL 0/0:38:30:33:0,30,878 +chrX 1398313 . T . . END=1398313 GT:DP:GQ:MIN_DP:PL 0/0:31:8:31:0,8,696 +chrX 1398314 . C A, 93.64 . AS_QUALapprox=|101|0;AS_VarDP=23|16|0;BaseQRankSum=1.153;DP=45;MQRankSum=-1.681;QUALapprox=101;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158000,45;ReadPosRankSum=0.614;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:23,16,0:39:99:101,0,504,168,540,708:13,10,0,16 +chrX 1398315 . A . . END=1398807 GT:DP:GQ:MIN_DP:PL 0/0:55:92:55:0,92,1340 +chrX 1398808 . C G, 1113.06 . AS_QUALapprox=|1127|0;AS_VarDP=0|33|0;DP=35;QUALapprox=1127;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=33 GT:AD:DP:GQ:PL:SB 1/1:0,33,0:33:99:1127,99,0,1127,99,1127:0,0,15,18 +chrX 1398809 . A . . END=1399284 GT:DP:GQ:MIN_DP:PL 0/0:55:79:55:0,79,1129 +chrX 1399285 . C T, 701.64 . AS_QUALapprox=|709|0;AS_VarDP=27|26|0;BaseQRankSum=-0.058;DP=53;MQRankSum=0.000;QUALapprox=709;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=-0.650;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:27,26,0:53:99:709,0,760,791,837,1628:14,13,18,8 +chrX 1399286 . G . . END=1400362 GT:DP:GQ:MIN_DP:PL 0/0:63:69:63:0,69,1449 +chrX 1400363 . CTGTG C,CTG, 2212.02 . AS_QUALapprox=|1474|988|0;AS_VarDP=0|31|22|0;DP=67;QUALapprox=2229;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=53 GT:AD:DP:GQ:PL:SB 1/2:0,31,22,0:53:99:2229,844,755,1275,0,1241,2183,857,1298,2195:0,0,31,22 +chrX 1400368 . T . . END=1400385 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1400386 . T C, 724.64 . AS_QUALapprox=|732|0;AS_VarDP=39|23|0;BaseQRankSum=-1.854;DP=64;MQRankSum=0.000;QUALapprox=732;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=-0.897;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:39,23,0:62:99:732,0,1425,849,1494,2344:20,19,15,8 +chrX 1400387 . G . . END=1401052 GT:DP:GQ:MIN_DP:PL 0/0:74:99:74:0,120,1800 +chrX 1401053 . G A, 1951.06 . AS_QUALapprox=|1965|0;AS_VarDP=0|59|0;DP=64;QUALapprox=1965;RAW_GT_COUNT=0,0,1;RAW_MQandDP=228298,64;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1965,177,0,1965,177,1965:0,0,24,35 +chrX 1401054 . C . . END=1401335 GT:DP:GQ:MIN_DP:PL 0/0:62:58:62:0,58,1530 +chrX 1401336 . T . . END=1401336 GT:DP:GQ:MIN_DP:PL 0/0:71:0:71:0,0,1672 +chrX 1401337 . A . . END=1402101 GT:DP:GQ:MIN_DP:PL 0/0:74:88:74:0,88,1424 +chrX 1402102 . C T, 2050.06 . AS_QUALapprox=|2064|0;AS_VarDP=0|65|0;DP=68;QUALapprox=2064;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;VarDP=65 GT:AD:DP:GQ:PL:SB 1/1:0,65,0:65:99:2064,194,0,2064,194,2064:0,0,26,39 +chrX 1402103 . C . . END=1402400 GT:DP:GQ:MIN_DP:PL 0/0:43:36:43:0,36,1116 +chrX 1402401 . T . . END=1402401 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,829 +chrX 1402402 . C . . END=1402403 GT:DP:GQ:MIN_DP:PL 0/0:41:88:41:0,88,1235 +chrX 1402404 . T . . END=1402404 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,802 +chrX 1402405 . C . . END=1402414 GT:DP:GQ:MIN_DP:PL 0/0:34:39:31:0,39,787 +chrX 1402415 . A . . END=1402416 GT:DP:GQ:MIN_DP:PL 0/0:32:10:32:0,10,711 +chrX 1402417 . C . . END=1402421 GT:DP:GQ:MIN_DP:PL 0/0:33:71:33:0,71,963 +chrX 1402422 . G . . END=1402422 GT:DP:GQ:MIN_DP:PL 0/0:27:0:27:0,0,642 +chrX 1402423 . T . . END=1402427 GT:DP:GQ:MIN_DP:PL 0/0:38:50:38:0,50,938 +chrX 1402428 . T . . END=1402428 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,800 +chrX 1402429 . C . . END=1402430 GT:DP:GQ:MIN_DP:PL 0/0:35:93:35:0,93,1395 +chrX 1402431 . T . . END=1402431 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,770 +chrX 1402432 . C . . END=1402434 GT:DP:GQ:MIN_DP:PL 0/0:36:87:36:0,87,1305 +chrX 1402435 . T . . END=1402435 GT:DP:GQ:MIN_DP:PL 0/0:32:14:32:0,14,817 +chrX 1402436 . G . . END=1402456 GT:DP:GQ:MIN_DP:PL 0/0:35:45:35:0,45,854 +chrX 1402457 . T . . END=1402457 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,596 +chrX 1402458 . C . . END=1402460 GT:DP:GQ:MIN_DP:PL 0/0:35:78:35:0,78,1170 +chrX 1402461 . A . . END=1402461 GT:DP:GQ:MIN_DP:PL 0/0:26:19:26:0,19,724 +chrX 1402462 . A . . END=1402480 GT:DP:GQ:MIN_DP:PL 0/0:30:20:28:0,20,745 +chrX 1402481 . A . . END=1402481 GT:DP:GQ:MIN_DP:PL 0/0:28:10:28:0,10,694 +chrX 1402482 . C . . END=1402482 GT:DP:GQ:MIN_DP:PL 0/0:33:81:33:0,81,1215 +chrX 1402483 . T . . END=1402483 GT:DP:GQ:MIN_DP:PL 0/0:28:10:28:0,10,734 +chrX 1402484 . C . . END=1402505 GT:DP:GQ:MIN_DP:PL 0/0:33:40:33:0,40,789 +chrX 1402506 . T . . END=1402506 GT:DP:GQ:MIN_DP:PL 0/0:32:7:32:0,7,774 +chrX 1402507 . T . . END=1402551 GT:DP:GQ:MIN_DP:PL 0/0:30:49:30:0,49,733 +chrX 1402552 . T . . END=1402552 GT:DP:GQ:MIN_DP:PL 0/0:29:19:29:0,19,731 +chrX 1402553 . C . . END=1402582 GT:DP:GQ:MIN_DP:PL 0/0:37:24:36:0,24,834 +chrX 1402583 . T . . END=1402583 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,453 +chrX 1402584 . C . . END=1402586 GT:DP:GQ:MIN_DP:PL 0/0:35:72:35:0,72,1080 +chrX 1402587 . A . . END=1402589 GT:DP:GQ:MIN_DP:PL 0/0:29:0:29:0,0,248 +chrX 1402590 . A . . END=1402591 GT:DP:GQ:MIN_DP:PL 0/0:26:31:25:0,31,687 +chrX 1402592 . G . . END=1402592 GT:DP:GQ:MIN_DP:PL 0/0:25:0:25:0,0,571 +chrX 1402593 . C . . END=1402593 GT:DP:GQ:MIN_DP:PL 0/0:28:49:28:0,49,813 +chrX 1402594 . A . . END=1402595 GT:DP:GQ:MIN_DP:PL 0/0:23:11:23:0,11,516 +chrX 1402596 . C . . END=1402597 GT:DP:GQ:MIN_DP:PL 0/0:27:46:27:0,46,788 +chrX 1402598 . T . . END=1402598 GT:DP:GQ:MIN_DP:PL 0/0:24:0:24:0,0,557 +chrX 1402599 . C . . END=1402600 GT:DP:GQ:MIN_DP:PL 0/0:26:23:24:0,23,655 +chrX 1402601 . G . . END=1402601 GT:DP:GQ:MIN_DP:PL 0/0:21:19:21:0,19,502 +chrX 1402602 . T . . END=1402606 GT:DP:GQ:MIN_DP:PL 0/0:24:47:24:0,47,735 +chrX 1402607 . A . . END=1402607 GT:DP:GQ:MIN_DP:PL 0/0:20:0:20:0,0,250 +chrX 1402608 . C . . END=1402608 GT:DP:GQ:MIN_DP:PL 0/0:23:44:23:0,44,710 +chrX 1402609 . T . . END=1402609 GT:DP:GQ:MIN_DP:PL 0/0:17:0:17:0,0,343 +chrX 1402610 . C . . END=1402613 GT:DP:GQ:MIN_DP:PL 0/0:22:31:22:0,31,675 +chrX 1402614 . A . . END=1402615 GT:DP:GQ:MIN_DP:PL 0/0:17:0:17:0,0,352 +chrX 1402616 . A . . END=1402617 GT:DP:GQ:MIN_DP:PL 0/0:18:29:18:0,29,444 +chrX 1402618 . G . . END=1402618 GT:DP:GQ:MIN_DP:PL 0/0:18:0:18:0,0,327 +chrX 1402619 . C . . END=1402619 GT:DP:GQ:MIN_DP:PL 0/0:18:42:18:0,42,630 +chrX 1402620 . A . . END=1402621 GT:DP:GQ:MIN_DP:PL 0/0:17:0:17:0,0,408 +chrX 1402622 . C . . END=1402623 GT:DP:GQ:MIN_DP:PL 0/0:19:32:19:0,32,581 +chrX 1402624 . T . . END=1402624 GT:DP:GQ:MIN_DP:PL 0/0:17:16:17:0,16,481 +chrX 1402625 . C . . END=1402634 GT:DP:GQ:MIN_DP:PL 0/0:16:20:16:0,20,412 +chrX 1402635 . C . . END=1402636 GT:DP:GQ:MIN_DP:PL 0/0:17:0:17:0,0,338 +chrX 1402637 . C . . END=1402640 GT:DP:GQ:MIN_DP:PL 0/0:18:29:18:0,29,450 +chrX 1402641 . A . . END=1402641 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,357 +chrX 1402642 . A . . END=1402642 GT:DP:GQ:MIN_DP:PL 0/0:13:30:13:0,30,450 +chrX 1402643 . A . . END=1402643 GT:DP:GQ:MIN_DP:PL 0/0:14:17:14:0,17,377 +chrX 1402644 . T . . END=1402644 GT:DP:GQ:MIN_DP:PL 0/0:13:30:13:0,30,450 +chrX 1402645 . G . . END=1402647 GT:DP:GQ:MIN_DP:PL 0/0:12:1:12:0,1,297 +chrX 1402648 . G . . END=1402649 GT:DP:GQ:MIN_DP:PL 0/0:11:27:11:0,27,405 +chrX 1402650 . C . . END=1402650 GT:DP:GQ:MIN_DP:PL 0/0:11:8:11:0,8,303 +chrX 1402651 . T . . END=1402651 GT:DP:GQ:MIN_DP:PL 0/0:11:27:11:0,27,405 +chrX 1402652 . C . . END=1402655 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,183 +chrX 1402656 . C . . END=1402656 GT:DP:GQ:MIN_DP:PL 0/0:11:27:11:0,27,405 +chrX 1402657 . T . . END=1402658 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,168 +chrX 1402659 . C . . END=1402659 GT:DP:GQ:MIN_DP:PL 0/0:11:27:11:0,27,405 +chrX 1402660 . T . . END=1402662 GT:DP:GQ:MIN_DP:PL 0/0:10:0:10:0,0,174 +chrX 1402663 . C . . END=1402663 GT:DP:GQ:MIN_DP:PL 0/0:10:24:10:0,24,360 +chrX 1402664 . T . . END=1402664 GT:DP:GQ:MIN_DP:PL 0/0:9:0:9:0,0,203 +chrX 1402665 . C . . END=1402665 GT:DP:GQ:MIN_DP:PL 0/0:10:24:10:0,24,360 +chrX 1402666 . C . . END=1402666 GT:DP:GQ:MIN_DP:PL 0/0:10:0:10:0,0,248 +chrX 1402667 . TCCCCAATGCAGCTTCCTTCCCCCTCCCAAAATGCAGCCTCTGTCCCCACTC T, 231.60 . AS_QUALapprox=|239|0;AS_VarDP=2|6|0;DP=21;MQRankSum=-0.619;QUALapprox=239;RAW_GT_COUNT=0,1,0;RAW_MQandDP=61883,21;VarDP=8 GT:AD:DP:GQ:PL:SB 0/1:2,6,0:8:60:239,0,60,253,78,331:0,2,1,5 +chrX 1402719 . C . . END=1402721 GT:DP:GQ:MIN_DP:PL 0/0:10:27:9:0,27,313 +chrX 1402722 . A . . END=1402722 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,233 +chrX 1402723 . A . . END=1402723 GT:DP:GQ:MIN_DP:PL 0/0:13:38:13:0,38,330 +chrX 1402724 . A . . END=1402729 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,149 +chrX 1402730 . C . . END=1402731 GT:DP:GQ:MIN_DP:PL 0/0:14:36:12:0,36,417 +chrX 1402732 . T . . END=1402732 GT:DP:GQ:MIN_DP:PL 0/0:13:4:13:0,4,352 +chrX 1402733 . C . . END=1402734 GT:DP:GQ:MIN_DP:PL 0/0:14:25:13:0,25,383 +chrX 1402735 . T . . END=1402737 GT:DP:GQ:MIN_DP:PL 0/0:15:4:15:0,4,291 +chrX 1402738 . C . . END=1402740 GT:DP:GQ:MIN_DP:PL 0/0:18:51:18:0,51,606 +chrX 1402741 . T . . END=1402741 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,158 +chrX 1402742 . C . . END=1402768 GT:DP:GQ:MIN_DP:PL 0/0:21:31:18:0,31,442 +chrX 1402769 . T . . END=1402769 GT:DP:GQ:MIN_DP:PL 0/0:23:0:23:0,0,491 +chrX 1402770 . C . . END=1402773 GT:DP:GQ:MIN_DP:PL 0/0:26:50:26:0,50,790 +chrX 1402774 . A . . END=1402774 GT:DP:GQ:MIN_DP:PL 0/0:23:19:23:0,19,559 +chrX 1402775 . A . . END=1402776 GT:DP:GQ:MIN_DP:PL 0/0:25:31:25:0,31,610 +chrX 1402777 . T . . END=1402778 GT:DP:GQ:MIN_DP:PL 0/0:24:0:24:0,0,545 +chrX 1402779 . C . . END=1402780 GT:DP:GQ:MIN_DP:PL 0/0:23:54:23:0,54,810 +chrX 1402781 . A . . END=1402781 GT:DP:GQ:MIN_DP:PL 0/0:18:15:18:0,15,457 +chrX 1402782 . C . . END=1402794 GT:DP:GQ:MIN_DP:PL 0/0:21:27:20:0,27,555 +chrX 1402795 . T . . END=1402795 GT:DP:GQ:MIN_DP:PL 0/0:18:0:18:0,0,407 +chrX 1402796 . C . . END=1402799 GT:DP:GQ:MIN_DP:PL 0/0:19:48:19:0,48,720 +chrX 1402800 . A . . END=1402800 GT:DP:GQ:MIN_DP:PL 0/0:16:13:16:0,13,406 +chrX 1402801 . A . . END=1402803 GT:DP:GQ:MIN_DP:PL 0/0:18:26:17:0,26,501 +chrX 1402804 . G . . END=1402804 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,399 +chrX 1402805 . C . . END=1402805 GT:DP:GQ:MIN_DP:PL 0/0:17:42:17:0,42,630 +chrX 1402806 . A . . END=1402807 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,352 +chrX 1402808 . C . . END=1402809 GT:DP:GQ:MIN_DP:PL 0/0:16:39:16:0,39,585 +chrX 1402810 . T . . END=1402810 GT:DP:GQ:MIN_DP:PL 0/0:16:13:16:0,13,467 +chrX 1402811 . C . . END=1402811 GT:DP:GQ:MIN_DP:PL 0/0:17:39:17:0,39,585 +chrX 1402812 . T . . END=1402812 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,387 +chrX 1402813 . T . . END=1402817 GT:DP:GQ:MIN_DP:PL 0/0:16:33:16:0,33,467 +chrX 1402818 . T . . END=1402818 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,348 +chrX 1402819 . C . . END=1402820 GT:DP:GQ:MIN_DP:PL 0/0:16:39:16:0,39,585 +chrX 1402821 . T . . END=1402821 GT:DP:GQ:MIN_DP:PL 0/0:13:0:13:0,0,313 +chrX 1402822 . C . . END=1402825 GT:DP:GQ:MIN_DP:PL 0/0:16:36:16:0,36,540 +chrX 1402826 . G . . END=1402827 GT:DP:GQ:MIN_DP:PL 0/0:15:0:15:0,0,292 +chrX 1402828 . A . . END=1402828 GT:DP:GQ:MIN_DP:PL 0/0:15:30:15:0,30,432 +chrX 1402829 . T . . END=1402834 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,333 +chrX 1402835 . C . . END=1402835 GT:DP:GQ:MIN_DP:PL 0/0:15:33:15:0,33,495 +chrX 1402836 . T . . END=1402837 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,278 +chrX 1402838 . C . . END=1402838 GT:DP:GQ:MIN_DP:PL 0/0:14:33:14:0,33,495 +chrX 1402839 . T . . END=1402841 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,338 +chrX 1402842 . C . . END=1402844 GT:DP:GQ:MIN_DP:PL 0/0:15:20:15:0,20,421 +chrX 1402845 . T . . END=1402845 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,228 +chrX 1402846 . C . . END=1402847 GT:DP:GQ:MIN_DP:PL 0/0:15:31:15:0,31,472 +chrX 1402848 . T . . END=1402848 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,307 +chrX 1402849 . C . . END=1402852 GT:DP:GQ:MIN_DP:PL 0/0:16:20:15:0,20,452 +chrX 1402853 . G . . END=1402854 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,233 +chrX 1402855 . A . . END=1402856 GT:DP:GQ:MIN_DP:PL 0/0:16:23:16:0,23,477 +chrX 1402857 . G . . END=1402857 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,397 +chrX 1402858 . C . . END=1402859 GT:DP:GQ:MIN_DP:PL 0/0:15:31:14:0,31,447 +chrX 1402860 . G . . END=1402860 GT:DP:GQ:MIN_DP:PL 0/0:14:7:14:0,7,376 +chrX 1402861 . C . . END=1402865 GT:DP:GQ:MIN_DP:PL 0/0:16:23:16:0,23,466 +chrX 1402866 . T . . END=1402867 GT:DP:GQ:MIN_DP:PL 0/0:15:0:15:0,0,362 +chrX 1402868 . C . . END=1402871 GT:DP:GQ:MIN_DP:PL 0/0:16:28:14:0,28,428 +chrX 1402872 . T . . END=1402872 GT:DP:GQ:MIN_DP:PL 0/0:15:0:15:0,0,342 +chrX 1402873 . C . . END=1402879 GT:DP:GQ:MIN_DP:PL 0/0:17:26:17:0,26,532 +chrX 1402880 . G . . END=1402882 GT:DP:GQ:MIN_DP:PL 0/0:15:0:15:0,0,366 +chrX 1402883 . T . . END=1402892 GT:DP:GQ:MIN_DP:PL 0/0:16:20:15:0,20,432 +chrX 1402893 . T . . END=1402894 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,273 +chrX 1402895 . C . . END=1402895 GT:DP:GQ:MIN_DP:PL 0/0:16:34:16:0,34,497 +chrX 1402896 . C . . END=1402897 GT:DP:GQ:MIN_DP:PL 0/0:17:0:17:0,0,446 +chrX 1402898 . C . . END=1402898 GT:DP:GQ:MIN_DP:PL 0/0:17:45:17:0,45,675 +chrX 1402899 . T . . END=1402899 GT:DP:GQ:MIN_DP:PL 0/0:16:9:16:0,9,407 +chrX 1402900 . C . . END=1402900 GT:DP:GQ:MIN_DP:PL 0/0:18:40:18:0,40,567 +chrX 1402901 . C . . END=1402901 GT:DP:GQ:MIN_DP:PL 0/0:18:19:18:0,19,556 +chrX 1402902 . T . . END=1402906 GT:DP:GQ:MIN_DP:PL 0/0:19:26:17:0,26,522 +chrX 1402907 . G . . END=1402908 GT:DP:GQ:MIN_DP:PL 0/0:20:0:20:0,0,447 +chrX 1402909 . A . . END=1402920 GT:DP:GQ:MIN_DP:PL 0/0:19:22:19:0,22,567 +chrX 1402921 . T . . END=1402921 GT:DP:GQ:MIN_DP:PL 0/0:19:8:19:0,8,522 +chrX 1402922 . C . . END=1402978 GT:DP:GQ:MIN_DP:PL 0/0:27:25:21:0,25,590 +chrX 1402979 . T . . END=1402979 GT:DP:GQ:MIN_DP:PL 0/0:27:3:27:0,3,611 +chrX 1402980 . C . . END=1402991 GT:DP:GQ:MIN_DP:PL 0/0:31:30:28:0,30,693 +chrX 1402992 . T . . END=1402992 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,663 +chrX 1402993 . C . . END=1403010 GT:DP:GQ:MIN_DP:PL 0/0:34:31:30:0,31,754 +chrX 1403011 . A . . END=1403011 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,673 +chrX 1403012 . A . . END=1403057 GT:DP:GQ:MIN_DP:PL 0/0:32:22:31:0,22,828 +chrX 1403058 . A . . END=1403058 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,779 +chrX 1403059 . C . . END=1404113 GT:DP:GQ:MIN_DP:PL 0/0:59:46:59:0,46,1286 +chrX 1404114 . T . . END=1404129 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,610 +chrX 1404130 . ATGGT A, 698.04 . AS_QUALapprox=|1080|0;AS_VarDP=15|29|0;BaseQRankSum=2.063;DP=45;MQRankSum=-0.282;QUALapprox=1080;RAW_GT_COUNT=0,1,0;RAW_MQandDP=156650,45;ReadPosRankSum=1.128;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:15,29,0:44:99:1080,0,516,941,605,1521:8,7,13,6 +chrX 1404135 . T . . END=1404183 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,540 +chrX 1404184 . A . . END=1404245 GT:DP:GQ:MIN_DP:PL 0/0:50:70:50:0,70,1233 +chrX 1404246 . A . . END=1404246 GT:DP:GQ:MIN_DP:PL 0/0:59:6:59:0,6,1306 +chrX 1404247 . A . . END=1404530 GT:DP:GQ:MIN_DP:PL 0/0:59:25:57:0,25,1334 +chrX 1404531 . A G, 416.64 . AS_QUALapprox=|424|0;AS_VarDP=30|20|0;BaseQRankSum=-1.261;DP=53;MQRankSum=0.000;QUALapprox=424;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=1.476;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:30,20,0:50:99:424,0,803,514,862,1377:16,14,13,7 +chrX 1404532 . G . . END=1404619 GT:DP:GQ:MIN_DP:PL 0/0:63:87:63:0,87,1592 +chrX 1404620 . C . . END=1404620 GT:DP:GQ:MIN_DP:PL 0/0:64:11:64:0,11,1480 +chrX 1404621 . G . . END=1404627 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 1404628 . C . . END=1404628 GT:DP:GQ:MIN_DP:PL 0/0:60:0:60:0,0,1308 +chrX 1404629 . G . . END=1404689 GT:DP:GQ:MIN_DP:PL 0/0:51:87:51:0,87,1305 +chrX 1404690 . G GTAGA, 1390.03 . AS_QUALapprox=|1404|0;AS_VarDP=1|33|0;BaseQRankSum=-0.125;DP=38;MQRankSum=-1.175;QUALapprox=1404;RAW_GT_COUNT=0,0,1;RAW_MQandDP=98241,38;ReadPosRankSum=1.173;VarDP=34 GT:AD:DP:GQ:PL:SB 1/1:1,33,0:34:57:1404,57,0,1408,99,1450:0,1,13,20 +chrX 1404691 . T . . END=1404695 GT:DP:GQ:MIN_DP:PL 0/0:48:95:48:0,95,1469 +chrX 1404696 . G . . END=1404697 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,1009 +chrX 1404698 . A . . END=1404706 GT:DP:GQ:MIN_DP:PL 0/0:47:22:42:0,22,1356 +chrX 1404707 . C . . END=1404707 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,903 +chrX 1404708 . A . . END=1404716 GT:DP:GQ:MIN_DP:PL 0/0:44:60:44:0,60,1325 +chrX 1404717 . C . . END=1404717 GT:DP:GQ:MIN_DP:PL 0/0:39:18:39:0,18,1047 +chrX 1404718 . A . . END=1405121 GT:DP:GQ:MIN_DP:PL 0/0:50:43:50:0,43,1087 +chrX 1405122 . T . . END=1405122 GT:DP:GQ:MIN_DP:PL 0/0:54:0:54:0,0,1220 +chrX 1405123 . A . . END=1405171 GT:DP:GQ:MIN_DP:PL 0/0:59:20:49:0,20,1237 +chrX 1405172 . T . . END=1405172 GT:DP:GQ:MIN_DP:PL 0/0:57:0:57:0,0,1354 +chrX 1405173 . T . . END=1406205 GT:DP:GQ:MIN_DP:PL 0/0:42:20:37:0,20,828 +chrX 1406206 . A . . END=1406206 GT:DP:GQ:MIN_DP:PL 0/0:44:19:44:0,19,1143 +chrX 1406207 . G . . END=1406504 GT:DP:GQ:MIN_DP:PL 0/0:47:23:41:0,23,1085 +chrX 1406505 . G A, 501.64 . AS_QUALapprox=|509|0;AS_VarDP=27|20|0;BaseQRankSum=0.535;DP=47;MQRankSum=0.000;QUALapprox=509;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=-0.538;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:27,20,0:47:99:509,0,738,590,797,1388:16,11,7,13 +chrX 1406506 . G . . END=1406605 GT:DP:GQ:MIN_DP:PL 0/0:62:93:62:0,93,1647 +chrX 1406606 . A G, 1757.06 . AS_QUALapprox=|1771|0;AS_VarDP=0|55|0;DP=61;QUALapprox=1771;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1771,165,0,1771,165,1771:0,0,29,26 +chrX 1406607 . G . . END=1406918 GT:DP:GQ:MIN_DP:PL 0/0:62:79:62:0,79,1376 +chrX 1406919 . A . . END=1406919 GT:DP:GQ:MIN_DP:PL 0/0:51:5:51:0,5,1356 +chrX 1406920 . A . . END=1407041 GT:DP:GQ:MIN_DP:PL 0/0:45:68:45:0,68,1180 +chrX 1407042 . GTAGA G, 1799.03 . AS_QUALapprox=|1813|0;AS_VarDP=4|44|0;BaseQRankSum=2.041;DP=51;MQRankSum=2.209;QUALapprox=1813;RAW_GT_COUNT=0,0,1;RAW_MQandDP=182450,51;ReadPosRankSum=1.623;VarDP=48 GT:AD:DP:GQ:PL:SB 1/1:4,44,0:48:99:1813,117,0,1820,132,1835:2,2,19,25 +chrX 1407047 . T . . END=1408122 GT:DP:GQ:MIN_DP:PL 0/0:53:47:53:0,47,1169 +chrX 1408123 . C . . END=1408123 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,476 +chrX 1408124 . G . . END=1408155 GT:DP:GQ:MIN_DP:PL 0/0:38:62:38:0,62,893 +chrX 1408156 . G . . END=1408156 GT:DP:GQ:MIN_DP:PL 0/0:27:0:27:0,0,352 +chrX 1408157 . C . . END=1408329 GT:DP:GQ:MIN_DP:PL 0/0:16:21:9:0,21,313 +chrX 1408330 . G . . END=1410254 GT:DP:GQ:MIN_DP:PL 0/0:0:0:0:0,0,0 +chrX 1410255 . G . . END=1410508 GT:DP:GQ:MIN_DP:PL 0/0:11:24:8:0,24,248 +chrX 1410509 . G A, 1674.06 . AS_QUALapprox=|1688|0;AS_VarDP=0|50|0;DP=51;QUALapprox=1688;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1688,150,0,1688,150,1688:0,0,26,24 +chrX 1410510 . G . . END=1410575 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,114,1710 +chrX 1410576 . A G, 1576.06 . AS_QUALapprox=|1590|0;AS_VarDP=0|50|0;DP=55;QUALapprox=1590;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1590,150,0,1590,150,1590:0,0,20,30 +chrX 1410577 . C . . END=1410657 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 1410658 . C T, 1931.06 . AS_QUALapprox=|1945|0;AS_VarDP=0|59|0;DP=60;QUALapprox=1945;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1945,177,0,1945,177,1945:0,0,28,31 +chrX 1410659 . G . . END=1410746 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1410747 . GTGATGCA G, 2621.03 . AS_QUALapprox=|2635|0;AS_VarDP=0|59|0;DP=67;QUALapprox=2635;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:2635,178,0,2635,178,2635:0,0,33,26 +chrX 1410755 . T . . END=1410835 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1410836 . C G, 2619.06 . AS_QUALapprox=|2633|0;AS_VarDP=0|59|0;DP=60;QUALapprox=2633;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=59 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,59,0:59:99:0|1:1410836_C_G:2633,178,0,2633,178,2633:1410836:0,0,34,25 +chrX 1410837 . C T, 2619.06 . AS_QUALapprox=|2633|0;AS_VarDP=0|59|0;DP=59;QUALapprox=2633;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=59 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,59,0:59:99:0|1:1410836_C_G:2633,178,0,2633,178,2633:1410836:0,0,34,25 +chrX 1410838 . T . . END=1410846 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 1410847 . T G, 2763.06 . AS_QUALapprox=|2777|0;AS_VarDP=0|64|0;DP=64;QUALapprox=2777;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=64 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,64,0:64:99:0|1:1410836_C_G:2777,193,0,2777,193,2777:1410836:0,0,37,27 +chrX 1410848 . C . . END=1410968 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,102,1606 +chrX 1410969 . C T, 2006.06 . AS_QUALapprox=|2020|0;AS_VarDP=1|61|0;BaseQRankSum=2.386;DP=63;MQRankSum=0.000;QUALapprox=2020;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;ReadPosRankSum=-1.398;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:1,61,0:62:99:2020,176,0,2023,183,2030:0,1,33,28 +chrX 1410970 . G . . END=1411060 GT:DP:GQ:MIN_DP:PL 0/0:63:96:63:0,96,1726 +chrX 1411061 . A C, 1675.06 . AS_QUALapprox=|1689|0;AS_VarDP=0|55|0;DP=56;QUALapprox=1689;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1689,164,0,1689,164,1689:0,0,34,21 +chrX 1411062 . G . . END=1411107 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 1411108 . C G, 2157.06 . AS_QUALapprox=|2171|0;AS_VarDP=0|69|0;DP=71;QUALapprox=2171;RAW_GT_COUNT=0,0,1;RAW_MQandDP=250452,71;VarDP=69 GT:AD:DP:GQ:PL:SB 1/1:0,69,0:69:99:2171,206,0,2171,206,2171:0,0,37,32 +chrX 1411109 . T . . END=1411167 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 1411168 . A C, 2731.06 . AS_QUALapprox=|2745|0;AS_VarDP=0|61|0;DP=62;QUALapprox=2745;RAW_GT_COUNT=0,0,1;RAW_MQandDP=222736,62;VarDP=61 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,61,0:61:99:0|1:1411168_A_C:2745,184,0,2745,184,2745:1411168:0,0,32,29 +chrX 1411169 . G . . END=1411170 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1411171 . G A, 2731.06 . AS_QUALapprox=|2745|0;AS_VarDP=0|61|0;DP=61;QUALapprox=2745;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219136,61;VarDP=61 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,61,0:61:99:0|1:1411168_A_C:2745,184,0,2745,184,2745:1411168:0,0,32,29 +chrX 1411172 . A . . END=1411190 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 1411191 . A C, 2712.06 . AS_QUALapprox=|2726|0;AS_VarDP=0|64|0;DP=65;QUALapprox=2726;RAW_GT_COUNT=0,0,1;RAW_MQandDP=233536,65;VarDP=64 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,64,0:64:99:0|1:1411168_A_C:2726,192,0,2726,192,2726:1411168:0,0,33,31 +chrX 1411192 . A . . END=1411239 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1411240 . G GGA, 2182.03 . AS_QUALapprox=|2196|0;AS_VarDP=0|53|0;DP=58;QUALapprox=2196;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:2196,159,0,2196,160,2196:0,0,29,24 +chrX 1411241 . G . . END=1411334 GT:DP:GQ:MIN_DP:PL 0/0:71:75:71:0,75,1695 +chrX 1411335 . C G, 1004.64 . AS_QUALapprox=|1012|0;AS_VarDP=40|38|0;BaseQRankSum=0.201;DP=78;MQRankSum=0.000;QUALapprox=1012;RAW_GT_COUNT=0,1,0;RAW_MQandDP=280800,78;ReadPosRankSum=0.000;VarDP=78 GT:AD:DP:GQ:PL:SB 0/1:40,38,0:78:99:1012,0,1101,1132,1215,2347:18,22,15,23 +chrX 1411336 . C . . END=1411419 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1411420 . C T, 892.64 . AS_QUALapprox=|900|0;AS_VarDP=32|33|0;BaseQRankSum=0.703;DP=69;MQRankSum=0.000;QUALapprox=900;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=-0.053;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:32,33,0:65:99:900,0,847,996,946,1942:14,18,13,20 +chrX 1411421 . A . . END=1411564 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 1411565 . T C, 1105.64 . AS_QUALapprox=|1113|0;AS_VarDP=29|31|0;BaseQRankSum=-2.312;DP=60;MQRankSum=0.000;QUALapprox=1113;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=-0.348;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,31,0:60:99:0|1:1411565_T_C:1113,0,1093,1200,1186,2386:1411565:14,15,14,17 +chrX 1411566 . G . . END=1411589 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1411590 . G A, 1017.64 . AS_QUALapprox=|1025|0;AS_VarDP=33|28|0;BaseQRankSum=0.203;DP=61;MQRankSum=0.000;QUALapprox=1025;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-0.252;VarDP=61 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:33,28,0:61:99:0|1:1411565_T_C:1025,0,1219,1125,1303,2428:1411565:16,17,14,14 +chrX 1411591 . T . . END=1411623 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,117,1639 +chrX 1411624 . G GCTGACACTTCAGCAACACGGCTGTAAA, 1071.60 . AS_QUALapprox=|1079|0;AS_VarDP=32|28|0;BaseQRankSum=1.329;DP=61;MQRankSum=0.000;QUALapprox=1079;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-1.209;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:32,28,0:60:99:1079,0,1260,1176,1344,2520:17,15,11,17 +chrX 1411625 . C . . END=1411627 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 1411628 . C . . END=1411632 GT:DP:GQ:MIN_DP:PL 0/0:65:0:65:0,0,1303 +chrX 1411633 . T . . END=1411634 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1411635 . C . . END=1411636 GT:DP:GQ:MIN_DP:PL 0/0:62:0:62:0,0,1354 +chrX 1411637 . C . . END=1411637 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1411638 . T . . END=1411643 GT:DP:GQ:MIN_DP:PL 0/0:58:0:58:0,0,1445 +chrX 1411644 . G . . END=1411644 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 1411645 . T . . END=1411646 GT:DP:GQ:MIN_DP:PL 0/0:58:0:58:0,0,1494 +chrX 1411647 . G . . END=1411647 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1411648 . A . . END=1411651 GT:DP:GQ:MIN_DP:PL 0/0:58:0:58:0,0,1389 +chrX 1411652 . C . . END=1411656 GT:DP:GQ:MIN_DP:PL 0/0:61:41:61:0,41,1707 +chrX 1411657 . T . . END=1411658 GT:DP:GQ:MIN_DP:PL 0/0:63:5:63:0,5,1623 +chrX 1411659 . C . . END=1411734 GT:DP:GQ:MIN_DP:PL 0/0:60:30:59:0,30,1633 +chrX 1411735 . AAG A, 1005.60 . AS_QUALapprox=|1013|0;AS_VarDP=26|26|0;BaseQRankSum=-1.401;DP=53;MQRankSum=0.000;QUALapprox=1013;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=0.037;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,26,0:52:99:0|1:1411735_AAG_A:1013,0,1013,1092,1092,2183:1411735:9,17,8,18 +chrX 1411738 . A C, 1002.64 . AS_QUALapprox=|1010|0;AS_VarDP=27|26|0;BaseQRankSum=1.070;DP=54;MQRankSum=0.000;QUALapprox=1010;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=0.192;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,26,0:53:99:0|1:1411735_AAG_A:1010,0,1045,1092,1123,2215:1411735:10,17,8,18 +chrX 1411739 . A . . END=1411746 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,101,1620 +chrX 1411747 . T C, 1034.64 . AS_QUALapprox=|1042|0;AS_VarDP=27|27|0;BaseQRankSum=-1.386;DP=55;MQRankSum=0.000;QUALapprox=1042;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=0.837;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,27,0:54:99:0|1:1411735_AAG_A:1042,0,1032,1124,1113,2237:1411735:11,16,9,18 +chrX 1411748 . T . . END=1411805 GT:DP:GQ:MIN_DP:PL 0/0:52:53:52:0,53,1346 +chrX 1411806 . C CT,CTT,CTTTTTTTT, 990.02 . AS_QUALapprox=|487|905|711|0;AS_VarDP=0|5|8|8|0;DP=59;QUALapprox=1007;RAW_GT_COUNT=0,0,1;RAW_MQandDP=189098,59;VarDP=21 GT:AD:DP:GQ:PL:SB 2/3:0,5,8,8,0:21:99:1007,628,520,212,113,102,296,106,0,393,769,556,193,278,697:0,0,11,10 +chrX 1411807 . T . . END=1411830 GT:DP:GQ:MIN_DP:PL 0/0:64:48:64:0,48,720 +chrX 1411831 . G . . END=1411834 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,0 +chrX 1411835 . T . . END=1411987 GT:DP:GQ:MIN_DP:PL 0/0:40:20:38:0,20,1032 +chrX 1411988 . T G, 771.64 . AS_QUALapprox=|779|0;AS_VarDP=33|29|0;BaseQRankSum=-0.566;DP=66;MQRankSum=-1.498;QUALapprox=779;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230132,66;ReadPosRankSum=0.296;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:33,29,0:62:99:779,0,928,879,1015,1894:14,19,10,19 +chrX 1411989 . T . . END=1412106 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 1412107 . A G, 797.64 . AS_QUALapprox=|805|0;AS_VarDP=36|33|0;BaseQRankSum=-1.074;DP=73;MQRankSum=0.000;QUALapprox=805;RAW_GT_COUNT=0,1,0;RAW_MQandDP=262800,73;ReadPosRankSum=0.967;VarDP=69 GT:AD:DP:GQ:PL:SB 0/1:36,33,0:69:99:805,0,954,913,1052,1965:12,24,19,14 +chrX 1412108 . C . . END=1412290 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 1412291 . G A, 907.64 . AS_QUALapprox=|915|0;AS_VarDP=38|34|0;BaseQRankSum=1.059;DP=73;MQRankSum=1.678;QUALapprox=915;RAW_GT_COUNT=0,1,0;RAW_MQandDP=255929,73;ReadPosRankSum=0.892;VarDP=72 GT:AD:DP:GQ:PL:SB 0/1:38,34,0:72:99:915,0,1441,1029,1543,2572:17,21,22,12 +chrX 1412292 . A . . END=1412310 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 1412311 . T C, 1459.64 . AS_QUALapprox=|1467|0;AS_VarDP=35|38|0;BaseQRankSum=-0.133;DP=73;MQRankSum=-1.669;QUALapprox=1467;RAW_GT_COUNT=0,1,0;RAW_MQandDP=255929,73;ReadPosRankSum=-0.519;VarDP=73 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:35,38,0:73:99:0|1:1412311_T_C:1467,0,1355,1573,1470,3042:1412311:22,13,18,20 +chrX 1412312 . C . . END=1412314 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,120,1800 +chrX 1412315 . G C, 1462.64 . AS_QUALapprox=|1470|0;AS_VarDP=34|38|0;BaseQRankSum=-0.145;DP=73;MQRankSum=-1.645;QUALapprox=1470;RAW_GT_COUNT=0,1,0;RAW_MQandDP=255929,73;ReadPosRankSum=-0.513;VarDP=72 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:34,38,0:72:99:0|1:1412311_T_C:1470,0,1313,1573,1428,3000:1412311:21,13,18,20 +chrX 1412316 . C . . END=1412319 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,120,1800 +chrX 1412320 . C T, 935.64 . AS_QUALapprox=|943|0;AS_VarDP=39|35|0;BaseQRankSum=1.213;DP=75;MQRankSum=1.679;QUALapprox=943;RAW_GT_COUNT=0,1,0;RAW_MQandDP=263129,75;ReadPosRankSum=0.514;VarDP=74 GT:AD:DP:GQ:PL:SB 0/1:39,35,0:74:99:943,0,1522,1060,1627,2688:19,20,21,14 +chrX 1412321 . G . . END=1412371 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1412372 . T C, 640.64 . AS_QUALapprox=|648|0;AS_VarDP=32|26|0;BaseQRankSum=-1.353;DP=63;MQRankSum=0.000;QUALapprox=648;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226564,63;ReadPosRankSum=-0.540;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:32,26,0:58:99:648,0,887,744,965,1709:18,14,12,14 +chrX 1412373 . G . . END=1412522 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,101,1800 +chrX 1412523 . T C, 731.64 . AS_QUALapprox=|739|0;AS_VarDP=34|30|0;BaseQRankSum=-0.611;DP=66;MQRankSum=1.315;QUALapprox=739;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230348,66;ReadPosRankSum=0.572;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:34,30,0:64:99:739,0,1190,841,1280,2120:18,16,15,15 +chrX 1412524 . G . . END=1412548 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 1412549 . G T, 788.64 . AS_QUALapprox=|796|0;AS_VarDP=29|30|0;BaseQRankSum=0.617;DP=60;MQRankSum=1.475;QUALapprox=796;RAW_GT_COUNT=0,1,0;RAW_MQandDP=213800,60;ReadPosRankSum=0.531;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:29,30,0:59:99:796,0,1128,883,1218,2101:12,17,18,12 +chrX 1412550 . A . . END=1412563 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 1412564 . C T, 762.64 . AS_QUALapprox=|770|0;AS_VarDP=36|27|0;BaseQRankSum=1.816;DP=63;MQRankSum=-1.623;QUALapprox=770;RAW_GT_COUNT=0,1,0;RAW_MQandDP=224600,63;ReadPosRankSum=0.382;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:36,27,0:63:99:770,0,1307,878,1388,2266:20,16,9,18 +chrX 1412565 . G . . END=1412626 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1412627 . C G, 735.64 . AS_QUALapprox=|743|0;AS_VarDP=35|30|0;BaseQRankSum=1.023;DP=66;MQRankSum=0.000;QUALapprox=743;RAW_GT_COUNT=0,1,0;RAW_MQandDP=235681,66;ReadPosRankSum=-1.073;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:35,30,0:65:99:743,0,857,848,946,1794:17,18,6,24 +chrX 1412628 . G . . END=1412664 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 1412665 . C T, 903.64 . AS_QUALapprox=|911|0;AS_VarDP=30|35|0;BaseQRankSum=-0.618;DP=69;MQRankSum=0.000;QUALapprox=911;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=-1.126;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:30,35,0:65:99:911,0,761,1001,866,1867:9,21,14,21 +chrX 1412666 . T . . END=1412754 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,110,1549 +chrX 1412755 . C T, 752.64 . AS_QUALapprox=|760|0;AS_VarDP=25|27|0;BaseQRankSum=2.240;DP=55;MQRankSum=0.000;QUALapprox=760;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=1.127;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:25,27,0:52:99:760,0,633,835,714,1549:14,11,14,13 +chrX 1412756 . T . . END=1412871 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,116,1558 +chrX 1412872 . C G, 905.64 . AS_QUALapprox=|913|0;AS_VarDP=28|24|0;BaseQRankSum=2.127;DP=53;MQRankSum=0.000;QUALapprox=913;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=1.086;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,24,0:52:99:0|1:1412872_C_G:913,0,1048,997,1120,2117:1412872:14,14,17,7 +chrX 1412873 . G . . END=1412876 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,120,1800 +chrX 1412877 . T C, 917.64 . AS_QUALapprox=|925|0;AS_VarDP=24|24|0;BaseQRankSum=-0.065;DP=48;MQRankSum=0.000;QUALapprox=925;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=0.660;VarDP=48 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,24,0:48:99:0|1:1412872_C_G:925,0,925,997,997,1994:1412872:13,11,17,7 +chrX 1412878 . A . . END=1412944 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,105,1276 +chrX 1412945 . A G, 730.64 . AS_QUALapprox=|738|0;AS_VarDP=22|26|0;BaseQRankSum=-0.370;DP=51;MQRankSum=0.000;QUALapprox=738;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-1.678;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:22,26,0:48:99:738,0,595,803,673,1476:12,10,18,8 +chrX 1412946 . T . . END=1412957 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,113,1449 +chrX 1412958 . AAG A, 752.60 . AS_QUALapprox=|760|0;AS_VarDP=23|22|0;BaseQRankSum=-0.857;DP=48;MQRankSum=0.000;QUALapprox=760;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=0.341;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:23,22,0:45:99:760,0,851,829,916,1744:15,8,12,10 +chrX 1412961 . A . . END=1413068 GT:DP:GQ:MIN_DP:PL 0/0:53:88:53:0,88,1463 +chrX 1413069 . G C, 1110.64 . AS_QUALapprox=|1118|0;AS_VarDP=21|43|0;BaseQRankSum=-1.781;DP=65;MQRankSum=0.000;QUALapprox=1118;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=0.164;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:21,43,0:64:99:1118,0,496,1181,625,1806:9,12,20,23 +chrX 1413070 . G . . END=1413243 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,107,1662 +chrX 1413244 . C G, 896.64 . AS_QUALapprox=|904|0;AS_VarDP=38|25|0;BaseQRankSum=2.048;DP=65;MQRankSum=0.000;QUALapprox=904;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=0.524;VarDP=63 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:38,25,0:63:99:0|1:1413244_C_G:904,0,1509,1018,1585,2603:1413244:21,17,14,11 +chrX 1413245 . C . . END=1413252 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 1413253 . G T, 2789.06 . AS_QUALapprox=|2803|0;AS_VarDP=0|63|0;DP=66;QUALapprox=2803;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=63 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,63,0:63:99:0|1:1413244_C_G:2803,190,0,2803,190,2803:1413244:0,0,35,28 +chrX 1413254 . C T, 1498.64 . AS_QUALapprox=|1506|0;AS_VarDP=26|38|0;BaseQRankSum=-0.891;DP=66;MQRankSum=0.000;QUALapprox=1506;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=-0.619;VarDP=64 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:26,38,0:64:99:1|0:1413244_C_G:1506,0,935,1584,1050,2634:1413244:15,11,21,17 +chrX 1413255 . G . . END=1413347 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 1413348 . A AGGC, 1094.60 . AS_QUALapprox=|1102|0;AS_VarDP=35|29|0;BaseQRankSum=-0.726;DP=66;MQRankSum=0.000;QUALapprox=1102;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=-0.283;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:35,29,0:64:99:1102,0,1382,1207,1470,2677:17,18,15,14 +chrX 1413349 . G . . END=1414719 GT:DP:GQ:MIN_DP:PL 0/0:63:72:63:0,72,1488 +chrX 1414720 . T C, 1698.06 . AS_QUALapprox=|1712|0;AS_VarDP=0|52|0;DP=54;QUALapprox=1712;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1712,156,0,1712,156,1712:0,0,26,26 +chrX 1414721 . T . . END=1414802 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1414803 . G A, 2910.06 . AS_QUALapprox=|2924|0;AS_VarDP=0|65|0;DP=65;QUALapprox=2924;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=65 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,65,0:65:99:0|1:1414803_G_A:2924,196,0,2924,196,2924:1414803:0,0,28,37 +chrX 1414804 . C T, 3000.06 . AS_QUALapprox=|3014|0;AS_VarDP=0|67|0;DP=67;QUALapprox=3014;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=67 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,67,0:67:99:0|1:1414803_G_A:3014,202,0,3014,202,3014:1414803:0,0,29,38 +chrX 1414805 . G . . END=1414823 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 1414824 . G T, 2821.06 . AS_QUALapprox=|2835|0;AS_VarDP=0|63|0;DP=63;QUALapprox=2835;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=63 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,63,0:63:99:0|1:1414803_G_A:2835,190,0,2835,190,2835:1414803:0,0,29,34 +chrX 1414825 . A . . END=1414845 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1414846 . T C, 2731.06 . AS_QUALapprox=|2745|0;AS_VarDP=0|61|0;DP=61;QUALapprox=2745;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=61 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,61,0:61:99:0|1:1414803_G_A:2745,184,0,2745,184,2745:1414803:0,0,28,33 +chrX 1414847 . G . . END=1414855 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 1414856 . T G, 2586.06 . AS_QUALapprox=|2600|0;AS_VarDP=0|58|0;DP=58;QUALapprox=2600;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=58 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,58,0:58:99:0|1:1414803_G_A:2600,175,0,2600,175,2600:1414803:0,0,25,33 +chrX 1414857 . T . . END=1414877 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 1414878 . T C, 2504.06 . AS_QUALapprox=|2518|0;AS_VarDP=0|58|0;DP=60;QUALapprox=2518;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=58 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,58,0:58:99:0|1:1414803_G_A:2518,175,0,2518,175,2518:1414803:0,0,24,34 +chrX 1414879 . G . . END=1414941 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 1414942 . ATT A, 2126.03 . AS_QUALapprox=|2140|0;AS_VarDP=0|52|0;DP=55;QUALapprox=2140;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:2140,157,0,2140,157,2140:0,0,25,27 +chrX 1414945 . T . . END=1415052 GT:DP:GQ:MIN_DP:PL 0/0:58:35:58:0,35,1577 +chrX 1415053 . G C, 798.64 . AS_QUALapprox=|806|0;AS_VarDP=29|30|0;BaseQRankSum=0.141;DP=60;MQRankSum=-1.378;QUALapprox=806;RAW_GT_COUNT=0,1,0;RAW_MQandDP=213104,60;ReadPosRankSum=-1.160;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:29,30,0:59:99:806,0,756,892,846,1738:16,13,16,14 +chrX 1415054 . C . . END=1415063 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1415064 . CT C, 2730.03 . AS_QUALapprox=|2744|0;AS_VarDP=0|62|0;DP=62;QUALapprox=2744;RAW_GT_COUNT=0,0,1;RAW_MQandDP=220304,62;VarDP=62 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,62,0:62:99:0|1:1415064_CT_C:2744,187,0,2744,187,2744:1415064:0,0,36,26 +chrX 1415066 . G . . END=1415070 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,104,1726 +chrX 1415071 . G A, 2618.06 . AS_QUALapprox=|2632|0;AS_VarDP=0|60|0;DP=62;QUALapprox=2632;RAW_GT_COUNT=0,0,1;RAW_MQandDP=220304,62;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,60,0:60:99:0|1:1415064_CT_C:2632,181,0,2632,181,2632:1415064:0,0,35,25 +chrX 1415072 . G . . END=1415100 GT:DP:GQ:MIN_DP:PL 0/0:59:87:59:0,87,1672 +chrX 1415101 . T C, 2085.06 . AS_QUALapprox=|2099|0;AS_VarDP=0|63|0;DP=68;QUALapprox=2099;RAW_GT_COUNT=0,0,1;RAW_MQandDP=242756,68;VarDP=63 GT:AD:DP:GQ:PL:SB 1/1:0,63,0:63:99:2099,189,0,2099,189,2099:0,0,43,20 +chrX 1415102 . G . . END=1415149 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1415150 . T C, 1963.06 . AS_QUALapprox=|1977|0;AS_VarDP=0|64|0;DP=65;QUALapprox=1977;RAW_GT_COUNT=0,0,1;RAW_MQandDP=231849,65;VarDP=64 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:1977,191,0,1977,191,1977:0,0,41,23 +chrX 1415151 . G . . END=1415203 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 1415204 . G C, 2622.06 . AS_QUALapprox=|2636|0;AS_VarDP=0|61|0;DP=64;QUALapprox=2636;RAW_GT_COUNT=0,0,1;RAW_MQandDP=228235,64;VarDP=61 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,61,0:61:99:0|1:1415204_G_C:2636,183,0,2637,184,2637:1415204:0,0,37,24 +chrX 1415205 . G . . END=1415213 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 1415214 . T TCCAGGCGTGAGCCTGGGCACGTGGC, 2993.03 . AS_QUALapprox=|3007|0;AS_VarDP=0|68|0;DP=69;QUALapprox=3007;RAW_GT_COUNT=0,0,1;RAW_MQandDP=246235,69;VarDP=68 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,68,0:68:99:0|1:1415204_G_C:3007,204,0,3007,205,3007:1415204:0,0,40,28 +chrX 1415215 . C . . END=1415291 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1415292 . A G, 2857.06 . AS_QUALapprox=|2871|0;AS_VarDP=0|65|0;DP=66;QUALapprox=2871;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=65 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,65,0:65:99:0|1:1415292_A_G:2871,196,0,2871,196,2871:1415292:0,0,30,35 +chrX 1415293 . C . . END=1415293 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 1415294 . A C, 2857.06 . AS_QUALapprox=|2871|0;AS_VarDP=0|65|0;DP=65;QUALapprox=2871;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=65 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,65,0:65:99:0|1:1415292_A_G:2871,196,0,2871,196,2871:1415292:0,0,30,35 +chrX 1415295 . C . . END=1415322 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1415323 . C T, 1763.06 . AS_QUALapprox=|1777|0;AS_VarDP=1|55|0;BaseQRankSum=2.384;DP=58;MQRankSum=0.000;QUALapprox=1777;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;ReadPosRankSum=0.681;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:1,55,0:56:99:1777,158,0,1780,165,1787:1,0,23,32 +chrX 1415324 . G . . END=1415388 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 1415389 . A C, 2806.06 . AS_QUALapprox=|2820|0;AS_VarDP=0|65|0;DP=65;QUALapprox=2820;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=65 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,65,0:65:99:0|1:1415389_A_C:2820,196,0,2820,196,2820:1415389:0,0,23,42 +chrX 1415390 . C . . END=1415400 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1415401 . C T, 2635.06 . AS_QUALapprox=|2649|0;AS_VarDP=0|60|0;DP=60;QUALapprox=2649;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,60,0:60:99:0|1:1415389_A_C:2649,181,0,2649,181,2649:1415389:0,0,25,35 +chrX 1415402 . T . . END=1415426 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 1415427 . T C, 2284.06 . AS_QUALapprox=|2298|0;AS_VarDP=0|52|0;DP=53;QUALapprox=2298;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,52,0:52:99:0|1:1415427_T_C:2298,157,0,2298,157,2298:1415427:0,0,25,27 +chrX 1415428 . C . . END=1415428 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 1415429 . G A, 2284.06 . AS_QUALapprox=|2298|0;AS_VarDP=0|52|0;DP=52;QUALapprox=2298;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,52,0:52:99:0|1:1415427_T_C:2298,157,0,2298,157,2298:1415427:0,0,25,27 +chrX 1415430 . T . . END=1415460 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,115,1477 +chrX 1415461 . T C, 1991.06 . AS_QUALapprox=|2005|0;AS_VarDP=0|48|0;DP=49;QUALapprox=2005;RAW_GT_COUNT=0,0,1;RAW_MQandDP=174096,49;VarDP=48 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,48,0:48:99:0|1:1415461_T_C:2005,144,0,2006,144,2006:1415461:0,0,28,20 +chrX 1415462 . T . . END=1415470 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,108,1584 +chrX 1415471 . C CTTT, 2435.03 . AS_QUALapprox=|2449|0;AS_VarDP=0|58|0;DP=58;QUALapprox=2449;RAW_GT_COUNT=0,0,1;RAW_MQandDP=206496,58;VarDP=58 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,58,0:58:99:0|1:1415461_T_C:2449,175,0,2449,175,2449:1415461:0,0,33,25 +chrX 1415472 . T . . END=1415491 GT:DP:GQ:MIN_DP:PL 0/0:48:34:42:0,34,1112 +chrX 1415492 . T C, 1825.06 . AS_QUALapprox=|1839|0;AS_VarDP=0|45|0;DP=46;QUALapprox=1839;RAW_GT_COUNT=0,0,1;RAW_MQandDP=161296,46;VarDP=45 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,45,0:45:99:0|1:1415461_T_C:1839,135,0,1839,135,1839:1415461:0,0,27,18 +chrX 1415493 . T . . END=1415610 GT:DP:GQ:MIN_DP:PL 0/0:55:75:55:0,75,1515 +chrX 1415611 . G A, 2023.06 . AS_QUALapprox=|2037|0;AS_VarDP=0|48|0;DP=48;QUALapprox=2037;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165953,48;VarDP=48 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,48,0:48:99:0|1:1415611_G_A:2037,144,0,2037,144,2037:1415611:0,0,23,25 +chrX 1415612 . C . . END=1415625 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,99,1485 +chrX 1415626 . C T, 1850.06 . AS_QUALapprox=|1864|0;AS_VarDP=0|43|0;DP=44;QUALapprox=1864;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151553,44;VarDP=43 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,43,0:43:99:0|1:1415611_G_A:1864,129,0,1864,129,1864:1415611:0,0,22,21 +chrX 1415627 . G . . END=1415697 GT:DP:GQ:MIN_DP:PL 0/0:44:94:44:0,94,1152 +chrX 1415698 . A T, 2076.06 . AS_QUALapprox=|2090|0;AS_VarDP=0|49|0;DP=51;QUALapprox=2090;RAW_GT_COUNT=0,0,1;RAW_MQandDP=179840,51;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,49,0:49:99:0|1:1415698_A_T:2090,147,0,2090,147,2090:1415698:0,0,21,28 +chrX 1415699 . C . . END=1415708 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,120,1800 +chrX 1415709 . G A, 2111.06 . AS_QUALapprox=|2125|0;AS_VarDP=0|50|0;DP=54;QUALapprox=2125;RAW_GT_COUNT=0,0,1;RAW_MQandDP=193930,54;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,50,0:50:99:0|1:1415698_A_T:2125,150,0,2125,150,2125:1415698:0,0,24,26 +chrX 1415710 . C . . END=1415999 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,119,1488 +chrX 1416000 . G C, 1822.06 . AS_QUALapprox=|1836|0;AS_VarDP=0|57|0;DP=60;QUALapprox=1836;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1836,171,0,1836,171,1836:0,0,25,32 +chrX 1416001 . C . . END=1416044 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 1416045 . GCA G, 2277.03 . AS_QUALapprox=|2291|0;AS_VarDP=0|52|0;DP=60;QUALapprox=2291;RAW_GT_COUNT=0,0,1;RAW_MQandDP=215764,60;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:2291,157,0,2291,157,2291:0,0,25,27 +chrX 1416048 . C . . END=1416102 GT:DP:GQ:MIN_DP:PL 0/0:55:82:55:0,82,1417 +chrX 1416103 . T . . END=1416103 GT:DP:GQ:MIN_DP:PL 0/0:74:4:74:0,4,1845 +chrX 1416104 . G . . END=1416128 GT:DP:GQ:MIN_DP:PL 0/0:74:78:74:0,78,1771 +chrX 1416129 . G . . END=1416129 GT:DP:GQ:MIN_DP:PL 0/0:58:16:58:0,16,1438 +chrX 1416130 . C . . END=1416135 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 1416136 . T . . END=1416136 GT:DP:GQ:MIN_DP:PL 0/0:60:0:60:0,0,1448 +chrX 1416137 . G . . END=1416157 GT:DP:GQ:MIN_DP:PL 0/0:60:36:60:0,36,1358 +chrX 1416158 . T . . END=1416159 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,1090 +chrX 1416160 . G . . END=1416163 GT:DP:GQ:MIN_DP:PL 0/0:50:93:50:0,93,1273 +chrX 1416164 . T . . END=1416164 GT:DP:GQ:MIN_DP:PL 0/0:48:6:48:0,6,1150 +chrX 1416165 . A . . END=1416171 GT:DP:GQ:MIN_DP:PL 0/0:51:22:47:0,22,1204 +chrX 1416172 . T . . END=1416172 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,1045 +chrX 1416173 . A . . END=1416276 GT:DP:GQ:MIN_DP:PL 0/0:44:21:40:0,21,981 +chrX 1416277 . C . . END=1416277 GT:DP:GQ:MIN_DP:PL 0/0:49:4:49:0,4,1166 +chrX 1416278 . A . . END=1416331 GT:DP:GQ:MIN_DP:PL 0/0:45:36:44:0,36,1128 +chrX 1416332 . C T, 1215.06 . AS_QUALapprox=|1229|0;AS_VarDP=0|28|0;DP=28;QUALapprox=1229;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=28 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,28,0:28:84:0|1:1416332_C_T:1229,84,0,1229,84,1229:1416332:0,0,10,18 +chrX 1416333 . G . . END=1416339 GT:DP:GQ:MIN_DP:PL 0/0:28:56:28:0,56,798 +chrX 1416340 . CAG C, 1374.03 . AS_QUALapprox=|1388|0;AS_VarDP=0|32|0;DP=32;QUALapprox=1388;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=32 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,32,0:32:96:0|1:1416332_C_T:1388,96,0,1388,96,1388:1416332:0,0,12,20 +chrX 1416343 . A . . END=1416384 GT:DP:GQ:MIN_DP:PL 0/0:30:62:30:0,62,768 +chrX 1416385 . GCACA G, 1471.03 . AS_QUALapprox=|1485|0;AS_VarDP=0|33|0;DP=36;QUALapprox=1485;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129600,36;VarDP=33 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,33,0:33:99:0|1:1416385_GCACA_G:1485,99,0,1485,99,1485:1416385:0,0,13,20 +chrX 1416390 . C . . END=1416414 GT:DP:GQ:MIN_DP:PL 0/0:36:36:35:0,36,962 +chrX 1416415 . C . . END=1416415 GT:DP:GQ:MIN_DP:PL 0/0:35:1:35:0,1,978 +chrX 1416416 . AACAG A, 1741.03 . AS_QUALapprox=|1755|0;AS_VarDP=0|39|0;DP=39;QUALapprox=1755;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140400,39;VarDP=39 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,39,0:39:99:0|1:1416385_GCACA_G:1755,117,0,1755,117,1755:1416385:0,0,19,20 +chrX 1416421 . A . . END=1416421 GT:DP:GQ:MIN_DP:PL 0/0:37:2:37:0,2,1008 +chrX 1416422 . C . . END=1416423 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,99,1485 +chrX 1416424 . G . . END=1416425 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,949 +chrX 1416426 . C . . END=1416426 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,105,1575 +chrX 1416427 . A . . END=1416427 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,1092 +chrX 1416428 . C . . END=1416430 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,105,1575 +chrX 1416431 . G . . END=1416432 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,1091 +chrX 1416433 . A . . END=1416435 GT:DP:GQ:MIN_DP:PL 0/0:43:21:43:0,21,1227 +chrX 1416436 . T . . END=1416436 GT:DP:GQ:MIN_DP:PL 0/0:40:15:40:0,15,1070 +chrX 1416437 . A . . END=1416439 GT:DP:GQ:MIN_DP:PL 0/0:44:34:43:0,34,1262 +chrX 1416440 . C . . END=1416440 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,1226 +chrX 1416441 . A . . END=1416441 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,111,1665 +chrX 1416442 . T . . END=1416442 GT:DP:GQ:MIN_DP:PL 0/0:44:13:44:0,13,1170 +chrX 1416443 . A . . END=1416443 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,114,1710 +chrX 1416444 . G . . END=1416444 GT:DP:GQ:MIN_DP:PL 0/0:45:16:45:0,16,1235 +chrX 1416445 . A . . END=1416447 GT:DP:GQ:MIN_DP:PL 0/0:45:41:45:0,41,1366 +chrX 1416448 . T . . END=1416450 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,1170 +chrX 1416451 . A . . END=1416455 GT:DP:GQ:MIN_DP:PL 0/0:47:33:46:0,33,1376 +chrX 1416456 . T . . END=1416457 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,1119 +chrX 1416458 . G GAC, 2181.03 . AS_QUALapprox=|2195|0;AS_VarDP=0|49|0;DP=49;QUALapprox=2195;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,49,0:49:99:0|1:1416385_GCACA_G:2195,147,0,2195,147,2195:1416385:0,0,27,22 +chrX 1416459 . A . . END=1416461 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,120,1800 +chrX 1416462 . C . . END=1416462 GT:DP:GQ:MIN_DP:PL 0/0:49:8:49:0,8,1415 +chrX 1416463 . G A, 2181.06 . AS_QUALapprox=|2195|0;AS_VarDP=0|49|0;DP=51;QUALapprox=2195;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,49,0:49:99:0|1:1416385_GCACA_G:2195,148,0,2195,148,2195:1416385:0,0,27,22 +chrX 1416464 . C . . END=1416465 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 1416466 . G . . END=1416466 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,1332 +chrX 1416467 . A . . END=1416473 GT:DP:GQ:MIN_DP:PL 0/0:49:32:49:0,32,1440 +chrX 1416474 . T . . END=1416476 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,1097 +chrX 1416477 . A . . END=1416479 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 1416480 . T . . END=1416480 GT:DP:GQ:MIN_DP:PL 0/0:53:0:53:0,0,1303 +chrX 1416481 . A . . END=1416485 GT:DP:GQ:MIN_DP:PL 0/0:54:23:54:0,23,1509 +chrX 1416486 . T . . END=1416486 GT:DP:GQ:MIN_DP:PL 0/0:54:8:54:0,8,1419 +chrX 1416487 . A . . END=1416490 GT:DP:GQ:MIN_DP:PL 0/0:52:27:50:0,27,1419 +chrX 1416491 . C . . END=1416491 GT:DP:GQ:MIN_DP:PL 0/0:49:8:49:0,8,1294 +chrX 1416492 . G . . END=1416492 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 1416493 . A . . END=1416493 GT:DP:GQ:MIN_DP:PL 0/0:51:14:51:0,14,1445 +chrX 1416494 . C . . END=1416495 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 1416496 . G . . END=1416497 GT:DP:GQ:MIN_DP:PL 0/0:48:1:48:0,1,1183 +chrX 1416498 . C . . END=1416528 GT:DP:GQ:MIN_DP:PL 0/0:44:25:42:0,25,1130 +chrX 1416529 . G . . END=1416529 GT:DP:GQ:MIN_DP:PL 0/0:41:19:41:0,19,1076 +chrX 1416530 . G . . END=1416530 GT:DP:GQ:MIN_DP:PL 0/0:43:25:43:0,25,1165 +chrX 1416531 . G . . END=1416531 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,1147 +chrX 1416532 . C . . END=1416539 GT:DP:GQ:MIN_DP:PL 0/0:44:83:44:0,83,1310 +chrX 1416540 . C T, 1319.06 . AS_QUALapprox=|1333|0;AS_VarDP=0|45|0;DP=47;QUALapprox=1333;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;VarDP=45 GT:AD:DP:GQ:PL:SB 1/1:0,45,0:45:99:1333,133,0,1333,133,1333:0,0,23,22 +chrX 1416541 . G . . END=1416708 GT:DP:GQ:MIN_DP:PL 0/0:62:94:62:0,94,1481 +chrX 1416709 . C T, 1773.06 . AS_QUALapprox=|1787|0;AS_VarDP=0|52|0;DP=56;QUALapprox=1787;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1787,156,0,1787,156,1787:0,0,25,27 +chrX 1416710 . G . . END=1416736 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 1416737 . ACAGT A, 2271.03 . AS_QUALapprox=|2285|0;AS_VarDP=0|51|0;DP=56;QUALapprox=2285;RAW_GT_COUNT=0,0,1;RAW_MQandDP=200704,56;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:2285,154,0,2285,154,2285:0,0,23,28 +chrX 1416742 . C . . END=1416777 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 1416778 . TACAC T, 2146.03 . AS_QUALapprox=|2160|0;AS_VarDP=0|48|0;DP=53;QUALapprox=2160;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=48 GT:AD:DP:GQ:PL:SB 1/1:0,48,0:48:99:2160,145,0,2160,145,2160:0,0,22,26 +chrX 1416783 . A . . END=1416823 GT:DP:GQ:MIN_DP:PL 0/0:49:98:49:0,98,1464 +chrX 1416824 . T C, 1488.06 . AS_QUALapprox=|1502|0;AS_VarDP=0|47|0;DP=49;QUALapprox=1502;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1502,140,0,1502,140,1502:0,0,21,26 +chrX 1416825 . A . . END=1416853 GT:DP:GQ:MIN_DP:PL 0/0:48:94:48:0,94,1300 +chrX 1416854 . G C, 1598.06 . AS_QUALapprox=|1612|0;AS_VarDP=0|49|0;DP=51;QUALapprox=1612;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1612,147,0,1612,147,1612:0,0,21,28 +chrX 1416855 . A . . END=1417033 GT:DP:GQ:MIN_DP:PL 0/0:56:32:55:0,32,1477 +chrX 1417034 . G GAC, 2025.03 . AS_QUALapprox=|2039|0;AS_VarDP=0|46|0;DP=48;QUALapprox=2039;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,46,0:46:99:0|1:1417034_G_GAC:2039,138,0,2039,138,2039:1417034:0,0,26,20 +chrX 1417035 . A . . END=1417050 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,117,1755 +chrX 1417051 . T C, 2053.06 . AS_QUALapprox=|2067|0;AS_VarDP=0|48|0;DP=48;QUALapprox=2067;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=48 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,48,0:48:99:0|1:1417034_G_GAC:2067,144,0,2067,144,2067:1417034:0,0,28,20 +chrX 1417052 . G . . END=1417142 GT:DP:GQ:MIN_DP:PL 0/0:61:72:61:0,72,1369 +chrX 1417143 . A G, 1767.06 . AS_QUALapprox=|1781|0;AS_VarDP=0|56|0;DP=59;QUALapprox=1781;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1781,167,0,1781,167,1781:0,0,25,31 +chrX 1417144 . G . . END=1417303 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,109,1687 +chrX 1417304 . C CAG, 2354.03 . AS_QUALapprox=|2368|0;AS_VarDP=0|54|0;DP=59;QUALapprox=2368;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:2368,162,0,2368,163,2368:0,0,20,34 +chrX 1417305 . A . . END=1417341 GT:DP:GQ:MIN_DP:PL 0/0:52:98:52:0,98,1483 +chrX 1417342 . C T, 2505.06 . AS_QUALapprox=|2519|0;AS_VarDP=0|56|0;DP=58;QUALapprox=2519;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,56,0:56:99:0|1:1417342_C_T:2519,169,0,2519,169,2519:1417342:0,0,24,32 +chrX 1417343 . G A, 2540.06 . AS_QUALapprox=|2554|0;AS_VarDP=0|57|0;DP=59;QUALapprox=2554;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=57 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,57,0:57:99:0|1:1417342_C_T:2554,172,0,2554,172,2554:1417342:0,0,24,33 +chrX 1417344 . G . . END=1417357 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 1417358 . A C, 2545.06 . AS_QUALapprox=|2559|0;AS_VarDP=0|59|0;DP=62;QUALapprox=2559;RAW_GT_COUNT=0,0,1;RAW_MQandDP=222201,62;VarDP=59 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,59,0:59:99:0|1:1417342_C_T:2559,178,0,2559,178,2559:1417342:0,0,25,34 +chrX 1417359 . C . . END=1417404 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 1417405 . C T, 2215.06 . AS_QUALapprox=|2229|0;AS_VarDP=0|50|0;DP=53;QUALapprox=2229;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,50,0:50:99:0|1:1417405_C_T:2229,150,0,2229,151,2229:1417405:0,0,20,30 +chrX 1417406 . G . . END=1417410 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,120,1800 +chrX 1417411 . C CACAG, 2315.03 . AS_QUALapprox=|2329|0;AS_VarDP=0|52|0;DP=53;QUALapprox=2329;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,52,0:52:99:0|1:1417405_C_T:2329,157,0,2329,157,2329:1417405:0,0,22,30 +chrX 1417412 . A . . END=1417515 GT:DP:GQ:MIN_DP:PL 0/0:54:65:54:0,65,1474 +chrX 1417516 . C CAT, 2135.03 . AS_QUALapprox=|2149|0;AS_VarDP=0|48|0;DP=49;QUALapprox=2149;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=48 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,48,0:48:99:0|1:1417516_C_CAT:2149,144,0,2149,144,2149:1417516:0,0,26,22 +chrX 1417517 . A . . END=1417522 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,117,1339 +chrX 1417523 . G GCA, 2049.03 . AS_QUALapprox=|2063|0;AS_VarDP=0|46|0;DP=47;QUALapprox=2063;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,46,0:46:99:0|1:1417516_C_CAT:2063,138,0,2063,138,2063:1417516:0,0,25,21 +chrX 1417524 . C . . END=1417569 GT:DP:GQ:MIN_DP:PL 0/0:44:81:44:0,81,1171 +chrX 1417570 . GCACA G, 1765.03 . AS_QUALapprox=|1779|0;AS_VarDP=0|40|0;DP=41;QUALapprox=1779;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147600,41;VarDP=40 GT:AD:DP:GQ:PL:SB 1/1:0,40,0:40:99:1779,120,0,1779,120,1779:0,0,19,21 +chrX 1417575 . C . . END=1417576 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,101,1435 +chrX 1417577 . G . . END=1417577 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,1083 +chrX 1417578 . A . . END=1417720 GT:DP:GQ:MIN_DP:PL 0/0:45:28:39:0,28,997 +chrX 1417721 . GAC G, 1809.03 . AS_QUALapprox=|1823|0;AS_VarDP=0|41|0;DP=45;QUALapprox=1823;RAW_GT_COUNT=0,0,1;RAW_MQandDP=160609,45;VarDP=41 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,41,0:41:99:0|1:1417721_GAC_G:1823,124,0,1823,124,1823:1417721:0,0,22,19 +chrX 1417724 . A . . END=1417747 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,117,1755 +chrX 1417748 . G A, 2056.06 . AS_QUALapprox=|2070|0;AS_VarDP=0|46|0;DP=46;QUALapprox=2070;RAW_GT_COUNT=0,0,1;RAW_MQandDP=164209,46;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,46,0:46:99:0|1:1417721_GAC_G:2070,138,0,2070,138,2070:1417721:0,0,27,19 +chrX 1417749 . C . . END=1417751 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,114,1710 +chrX 1417752 . AGACATGCTCCATGT A, 2146.03 . AS_QUALapprox=|2160|0;AS_VarDP=0|48|0;DP=48;QUALapprox=2160;RAW_GT_COUNT=0,0,1;RAW_MQandDP=171409,48;VarDP=48 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,48,0:48:99:0|1:1417721_GAC_G:2160,144,0,2160,144,2160:1417721:0,0,27,21 +chrX 1417767 . C . . END=1417768 GT:DP:GQ:MIN_DP:PL 0/0:45:28:44:0,28,1200 +chrX 1417769 . CAGGTAT C, 2091.03 . AS_QUALapprox=|2105|0;AS_VarDP=0|47|0;DP=49;QUALapprox=2105;RAW_GT_COUNT=0,0,1;RAW_MQandDP=175009,49;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,47,0:47:99:0|1:1417721_GAC_G:2105,142,0,2105,142,2105:1417721:0,0,27,20 +chrX 1417776 . G . . END=1417783 GT:DP:GQ:MIN_DP:PL 0/0:45:31:45:0,31,1224 +chrX 1417784 . G . . END=1417784 GT:DP:GQ:MIN_DP:PL 0/0:41:19:41:0,19,1126 +chrX 1417785 . C . . END=1417786 GT:DP:GQ:MIN_DP:PL 0/0:46:34:46:0,34,1320 +chrX 1417787 . T . . END=1417787 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,1132 +chrX 1417788 . A . . END=1417803 GT:DP:GQ:MIN_DP:PL 0/0:47:37:46:0,37,1289 +chrX 1417804 . CAGAG C, 2371.03 . AS_QUALapprox=|2385|0;AS_VarDP=0|53|0;DP=54;QUALapprox=2385;RAW_GT_COUNT=0,0,1;RAW_MQandDP=191009,54;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:2385,160,0,2385,160,2385:0,0,29,24 +chrX 1417809 . A . . END=1418108 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 1418109 . C G, 1792.06 . AS_QUALapprox=|1806|0;AS_VarDP=0|61|0;DP=64;QUALapprox=1806;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=61 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:1806,181,0,1806,181,1806:0,0,24,37 +chrX 1418110 . G . . END=1418521 GT:DP:GQ:MIN_DP:PL 0/0:57:84:57:0,84,1358 +chrX 1418522 . G T, 2179.06 . AS_QUALapprox=|2193|0;AS_VarDP=0|69|0;DP=70;QUALapprox=2193;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;VarDP=69 GT:AD:DP:GQ:PL:SB 1/1:0,69,0:69:99:2193,206,0,2193,206,2193:0,0,33,36 +chrX 1418523 . G . . END=1418740 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1418741 . T C, 1555.06 . AS_QUALapprox=|1569|0;AS_VarDP=0|49|0;DP=53;QUALapprox=1569;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1569,146,0,1569,146,1569:0,0,24,25 +chrX 1418742 . G . . END=1418987 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1418988 . C T, 403.64 . AS_QUALapprox=|411|0;AS_VarDP=33|17|0;BaseQRankSum=0.970;DP=52;MQRankSum=0.000;QUALapprox=411;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=0.584;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:33,17,0:50:99:411,0,897,510,948,1458:14,19,8,9 +chrX 1418989 . G . . END=1419420 GT:DP:GQ:MIN_DP:PL 0/0:55:97:55:0,97,1629 +chrX 1419421 . C T, 2203.06 . AS_QUALapprox=|2217|0;AS_VarDP=0|68|0;DP=71;QUALapprox=2217;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;VarDP=68 GT:AD:DP:GQ:PL:SB 1/1:0,68,0:68:99:2217,204,0,2217,204,2217:0,0,39,29 +chrX 1419422 . C . . END=1420046 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,118,1613 +chrX 1420047 . G C, 2596.06 . AS_QUALapprox=|2610|0;AS_VarDP=0|58|0;DP=59;QUALapprox=2610;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=58 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,58,0:58:99:0|1:1420047_G_C:2610,175,0,2610,175,2610:1420047:0,0,30,28 +chrX 1420048 . T . . END=1420048 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 1420049 . C CTA, 1632.03 . AS_QUALapprox=|1646|0;AS_VarDP=4|54|0;BaseQRankSum=3.668;DP=59;MQRankSum=0.000;QUALapprox=1646;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;ReadPosRankSum=1.766;VarDP=58 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:4,54,0:58:84:0|1:1420047_G_C:1646,84,0,1657,161,1734:1420047:2,2,28,26 +chrX 1420050 . T . . END=1420164 GT:DP:GQ:MIN_DP:PL 0/0:55:90:55:0,90,1427 +chrX 1420165 . A G, 1807.06 . AS_QUALapprox=|1821|0;AS_VarDP=0|56|0;DP=60;QUALapprox=1821;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1821,168,0,1821,168,1821:0,0,32,24 +chrX 1420166 . T . . END=1420809 GT:DP:GQ:MIN_DP:PL 0/0:61:98:61:0,98,1319 +chrX 1420810 . T C, 1826.06 . AS_QUALapprox=|1840|0;AS_VarDP=0|56|0;DP=58;QUALapprox=1840;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1840,168,0,1840,168,1840:0,0,31,25 +chrX 1420811 . T . . END=1420836 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 1420837 . G A, 2054.06 . AS_QUALapprox=|2068|0;AS_VarDP=0|63|0;DP=65;QUALapprox=2068;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=63 GT:AD:DP:GQ:PL:SB 1/1:0,63,0:63:99:2068,189,0,2068,189,2068:0,0,37,26 +chrX 1420838 . G . . END=1420938 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,119,1788 +chrX 1420939 . A G, 1479.06 . AS_QUALapprox=|1493|0;AS_VarDP=0|46|0;DP=49;QUALapprox=1493;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1493,137,0,1493,137,1493:0,0,25,21 +chrX 1420940 . T . . END=1420959 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,119,1549 +chrX 1420960 . ATT A, 838.02 . AS_QUALapprox=|852|0;AS_VarDP=2|28|0;BaseQRankSum=-0.656;DP=47;MQRankSum=0.000;QUALapprox=852;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;ReadPosRankSum=1.041;VarDP=30 GT:AD:DP:GQ:PL:SB 1/1:2,28,0:30:31:852,31,0,858,84,912:2,0,12,16 +chrX 1420963 . T . . END=1421165 GT:DP:GQ:MIN_DP:PL 0/0:44:58:44:0,58,1166 +chrX 1421166 . C T, 2079.06 . AS_QUALapprox=|2093|0;AS_VarDP=0|63|0;DP=69;QUALapprox=2093;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=63 GT:AD:DP:GQ:PL:SB 1/1:0,63,0:63:99:2093,189,0,2093,189,2093:0,0,30,33 +chrX 1421167 . G . . END=1421226 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 1421227 . A G, 2199.06 . AS_QUALapprox=|2213|0;AS_VarDP=0|68|0;DP=72;QUALapprox=2213;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;VarDP=68 GT:AD:DP:GQ:PL:SB 1/1:0,68,0:68:99:2213,204,0,2213,204,2213:0,0,31,37 +chrX 1421228 . C . . END=1422182 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 1422183 . A G, 2025.06 . AS_QUALapprox=|2039|0;AS_VarDP=0|64|0;DP=70;QUALapprox=2039;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;VarDP=64 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:2039,192,0,2039,192,2039:0,0,29,35 +chrX 1422184 . T . . END=1422205 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,120,1800 +chrX 1422206 . T C, 3379.06 . AS_QUALapprox=|3393|0;AS_VarDP=0|76|0;DP=76;QUALapprox=3393;RAW_GT_COUNT=0,0,1;RAW_MQandDP=273600,76;VarDP=76 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,76,0:76:99:0|1:1422206_T_C:3393,229,0,3393,229,3393:1422206:0,0,36,40 +chrX 1422207 . G A, 3379.06 . AS_QUALapprox=|3393|0;AS_VarDP=0|76|0;DP=76;QUALapprox=3393;RAW_GT_COUNT=0,0,1;RAW_MQandDP=273600,76;VarDP=76 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,76,0:76:99:0|1:1422206_T_C:3393,229,0,3393,229,3393:1422206:0,0,36,40 +chrX 1422208 . C . . END=1422233 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 1422234 . C T, 3028.06 . AS_QUALapprox=|3042|0;AS_VarDP=0|69|0;DP=70;QUALapprox=3042;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;VarDP=69 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,69,0:69:99:0|1:1422234_C_T:3042,208,0,3042,208,3042:1422234:0,0,38,31 +chrX 1422235 . A G, 3028.06 . AS_QUALapprox=|3042|0;AS_VarDP=0|69|0;DP=70;QUALapprox=3042;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;VarDP=69 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,69,0:69:99:0|1:1422234_C_T:3042,208,0,3042,208,3042:1422234:0,0,38,31 +chrX 1422236 . G . . END=1422271 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1422272 . A G, 2627.06 . AS_QUALapprox=|2641|0;AS_VarDP=0|60|0;DP=60;QUALapprox=2641;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,60,0:60:99:0|1:1422272_A_G:2641,181,0,2641,181,2641:1422272:0,0,36,24 +chrX 1422273 . T C, 2627.06 . AS_QUALapprox=|2641|0;AS_VarDP=0|60|0;DP=60;QUALapprox=2641;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,60,0:60:99:0|1:1422272_A_G:2641,181,0,2641,181,2641:1422272:0,0,36,24 +chrX 1422274 . T . . END=1422381 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1422382 . C G, 1772.06 . AS_QUALapprox=|1786|0;AS_VarDP=0|55|0;DP=57;QUALapprox=1786;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1786,165,0,1786,165,1786:0,0,18,37 +chrX 1422383 . C . . END=1422416 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1422417 . T C, 2464.06 . AS_QUALapprox=|2478|0;AS_VarDP=0|56|0;DP=56;QUALapprox=2478;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,56,0:56:99:0|1:1422417_T_C:2478,169,0,2478,169,2478:1422417:0,0,15,41 +chrX 1422418 . A . . END=1422419 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 1422420 . A G, 2603.06 . AS_QUALapprox=|2617|0;AS_VarDP=0|60|0;DP=60;QUALapprox=2617;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,60,0:60:99:0|1:1422417_T_C:2617,181,0,2617,181,2617:1422417:0,0,18,42 +chrX 1422421 . C . . END=1422434 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1422435 . C T, 2406.06 . AS_QUALapprox=|2420|0;AS_VarDP=0|54|0;DP=55;QUALapprox=2420;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,54,0:54:99:0|1:1422435_C_T:2420,163,0,2420,163,2420:1422435:0,0,17,37 +chrX 1422436 . T . . END=1422436 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 1422437 . C T, 2440.06 . AS_QUALapprox=|2454|0;AS_VarDP=0|55|0;DP=55;QUALapprox=2454;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,55,0:55:99:0|1:1422435_C_T:2454,166,0,2454,166,2454:1422435:0,0,17,38 +chrX 1422438 . A . . END=1422446 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 1422447 . C A, 2320.06 . AS_QUALapprox=|2334|0;AS_VarDP=0|53|0;DP=54;QUALapprox=2334;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,53,0:53:99:0|1:1422435_C_T:2334,160,0,2334,160,2334:1422435:0,0,17,36 +chrX 1422448 . T . . END=1422511 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 1422512 . T C, 1631.06 . AS_QUALapprox=|1645|0;AS_VarDP=0|50|0;DP=51;QUALapprox=1645;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1645,149,0,1645,149,1645:0,0,22,28 +chrX 1422513 . C . . END=1422549 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,108,1440 +chrX 1422550 . C T, 1310.06 . AS_QUALapprox=|1324|0;AS_VarDP=0|40|0;DP=42;QUALapprox=1324;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151200,42;VarDP=40 GT:AD:DP:GQ:PL:SB 1/1:0,40,0:40:99:1324,120,0,1324,120,1324:0,0,20,20 +chrX 1422551 . C . . END=1422630 GT:DP:GQ:MIN_DP:PL 0/0:44:94:44:0,94,1244 +chrX 1422631 . C T, 1423.06 . AS_QUALapprox=|1437|0;AS_VarDP=0|42|0;DP=43;QUALapprox=1437;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154800,43;VarDP=42 GT:AD:DP:GQ:PL:SB 1/1:0,42,0:42:99:1437,126,0,1437,126,1437:0,0,20,22 +chrX 1422632 . G . . END=1422662 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,109,1356 +chrX 1422663 . C T, 1496.06 . AS_QUALapprox=|1510|0;AS_VarDP=0|44|0;DP=44;QUALapprox=1510;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158400,44;VarDP=44 GT:AD:DP:GQ:PL:SB 1/1:0,44,0:44:99:1510,132,0,1510,132,1510:0,0,26,18 +chrX 1422664 . G . . END=1423208 GT:DP:GQ:MIN_DP:PL 0/0:57:86:57:0,86,1375 +chrX 1423209 . C T, 1983.06 . AS_QUALapprox=|1997|0;AS_VarDP=0|61|0;DP=63;QUALapprox=1997;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=61 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:1997,183,0,1997,183,1997:0,0,26,35 +chrX 1423210 . C . . END=1423258 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 1423259 . C T, 1767.06 . AS_QUALapprox=|1781|0;AS_VarDP=0|54|0;DP=55;QUALapprox=1781;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:1781,162,0,1781,162,1781:0,0,26,28 +chrX 1423260 . G . . END=1423483 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,115,1529 +chrX 1423484 . A G, 1813.06 . AS_QUALapprox=|1827|0;AS_VarDP=0|55|0;DP=57;QUALapprox=1827;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1827,165,0,1827,165,1827:0,0,27,28 +chrX 1423485 . T . . END=1423554 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,103,1325 +chrX 1423555 . C T, 1579.06 . AS_QUALapprox=|1593|0;AS_VarDP=1|50|0;BaseQRankSum=2.282;DP=52;MQRankSum=0.000;QUALapprox=1593;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;ReadPosRankSum=-1.632;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:1,50,0:51:99:1593,143,0,1596,150,1603:1,0,28,22 +chrX 1423556 . T . . END=1423594 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,111,1310 +chrX 1423595 . G A, 1459.06 . AS_QUALapprox=|1473|0;AS_VarDP=0|46|0;DP=47;QUALapprox=1473;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1473,137,0,1473,137,1473:0,0,24,22 +chrX 1423596 . T . . END=1423668 GT:DP:GQ:MIN_DP:PL 0/0:47:98:47:0,98,1278 +chrX 1423669 . G . . END=1423669 GT:DP:GQ:MIN_DP:PL 0/0:40:11:40:0,11,1012 +chrX 1423670 . A . . END=1423742 GT:DP:GQ:MIN_DP:PL 0/0:46:47:46:0,47,1075 +chrX 1423743 . TCCATCCATCCTC T, 1418.03 . AS_QUALapprox=|1432|0;AS_VarDP=0|32|0;DP=36;QUALapprox=1432;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126961,36;VarDP=32 GT:AD:DP:GQ:PL:SB 1/1:0,32,0:32:97:1432,97,0,1432,97,1432:0,0,13,19 +chrX 1423756 . C . . END=1423774 GT:DP:GQ:MIN_DP:PL 0/0:35:84:35:0,84,1083 +chrX 1423775 . CCCAT C, 1007.03 . AS_QUALapprox=|1021|0;AS_VarDP=2|33|0;BaseQRankSum=0.745;DP=40;MQRankSum=-0.265;QUALapprox=1021;RAW_GT_COUNT=0,0,1;RAW_MQandDP=137786,40;ReadPosRankSum=-0.320;VarDP=35 GT:AD:DP:GQ:PL:SB 1/1:2,33,0:35:55:1021,55,0,1027,99,1070:1,1,14,19 +chrX 1423780 . C . . END=1423781 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,0 +chrX 1423782 . A . . END=1424159 GT:DP:GQ:MIN_DP:PL 0/0:44:27:44:0,27,985 +chrX 1424160 . T . . END=1424160 GT:DP:GQ:MIN_DP:PL 0/0:44:3:44:0,3,1120 +chrX 1424161 . C . . END=1424178 GT:DP:GQ:MIN_DP:PL 0/0:46:66:46:0,66,1111 +chrX 1424179 . C . . END=1424179 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,1021 +chrX 1424180 . C . . END=1424197 GT:DP:GQ:MIN_DP:PL 0/0:42:21:40:0,21,992 +chrX 1424198 . G . . END=1424198 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,771 +chrX 1424199 . T . . END=1424205 GT:DP:GQ:MIN_DP:PL 0/0:37:76:37:0,76,1091 +chrX 1424206 . A . . END=1424206 GT:DP:GQ:MIN_DP:PL 0/0:37:2:37:0,2,927 +chrX 1424207 . C . . END=1424264 GT:DP:GQ:MIN_DP:PL 0/0:36:25:31:0,25,811 +chrX 1424265 . T . . END=1424265 GT:DP:GQ:MIN_DP:PL 0/0:29:17:29:0,17,738 +chrX 1424266 . G . . END=1424324 GT:DP:GQ:MIN_DP:PL 0/0:35:23:29:0,23,685 +chrX 1424325 . C T, 669.06 . AS_QUALapprox=|683|0;AS_VarDP=0|21|0;DP=26;QUALapprox=683;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;VarDP=21 GT:AD:DP:GQ:PL:SB 1/1:0,21,0:21:63:683,63,0,683,63,683:0,0,12,9 +chrX 1424326 . A . . END=1424364 GT:DP:GQ:MIN_DP:PL 0/0:22:57:22:0,57,661 +chrX 1424365 . C CATCCACCCTCCCATCCATCT, 1110.03 . AS_QUALapprox=|1124|0;AS_VarDP=0|25|0;DP=33;QUALapprox=1124;RAW_GT_COUNT=0,0,1;RAW_MQandDP=101159,33;VarDP=25 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,25,0:25:75:0|1:1424365_C_CATCCACCCTCCCATCCATCT:1124,75,0,1124,75,1125:1424365:0,0,21,4 +chrX 1424366 . A . . END=1424385 GT:DP:GQ:MIN_DP:PL 0/0:28:59:28:0,59,843 +chrX 1424386 . G C, 1269.06 . AS_QUALapprox=|1283|0;AS_VarDP=0|29|0;DP=34;QUALapprox=1283;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104759,34;VarDP=29 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,29,0:29:87:0|1:1424365_C_CATCCACCCTCCCATCCATCT:1283,87,0,1283,87,1283:1424365:0,0,24,5 +chrX 1424387 . T . . END=1424401 GT:DP:GQ:MIN_DP:PL 0/0:29:70:29:0,70,884 +chrX 1424402 . G A, 1213.06 . AS_QUALapprox=|1227|0;AS_VarDP=0|28|0;DP=32;QUALapprox=1227;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97559,32;VarDP=28 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,28,0:28:84:0|1:1424365_C_CATCCACCCTCCCATCCATCT:1227,84,0,1227,84,1228:1424365:0,0,23,5 +chrX 1424403 . T . . END=1424437 GT:DP:GQ:MIN_DP:PL 0/0:32:61:32:0,61,778 +chrX 1424438 . G A, 1229.06 . AS_QUALapprox=|1243|0;AS_VarDP=0|38|0;DP=42;QUALapprox=1243;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133559,42;VarDP=38 GT:AD:DP:GQ:PL:SB 1/1:0,38,0:38:99:1243,114,0,1243,114,1243:0,0,32,6 +chrX 1424439 . T . . END=1424470 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,108,1289 +chrX 1424471 . C T, 1366.06 . AS_QUALapprox=|1380|0;AS_VarDP=0|46|0;DP=49;QUALapprox=1380;RAW_GT_COUNT=0,0,1;RAW_MQandDP=166188,49;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1380,137,0,1380,137,1380:0,0,32,14 +chrX 1424472 . A . . END=1424535 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,101,1422 +chrX 1424536 . C T, 2534.06 . AS_QUALapprox=|2548|0;AS_VarDP=0|59|0;DP=59;QUALapprox=2548;RAW_GT_COUNT=0,0,1;RAW_MQandDP=210321,59;VarDP=59 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,59,0:59:99:0|1:1424536_C_T:2548,177,0,2548,177,2548:1424536:0,0,29,30 +chrX 1424537 . C . . END=1424556 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 1424557 . CATCT C, 2559.03 . AS_QUALapprox=|2573|0;AS_VarDP=0|60|0;DP=63;QUALapprox=2573;RAW_GT_COUNT=0,0,1;RAW_MQandDP=224721,63;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,60,0:60:99:0|1:1424536_C_T:2573,180,0,2573,180,2573:1424536:0,0,29,31 +chrX 1424562 . G . . END=1424721 GT:DP:GQ:MIN_DP:PL 0/0:56:94:56:0,94,1145 +chrX 1424722 . A . . END=1424722 GT:DP:GQ:MIN_DP:PL 0/0:43:10:43:0,10,1105 +chrX 1424723 . C . . END=1424808 GT:DP:GQ:MIN_DP:PL 0/0:51:56:51:0,56,1124 +chrX 1424809 . C . . END=1424852 GT:DP:GQ:MIN_DP:PL 0/0:27:0:27:0,0,436 +chrX 1424853 . T TCCAC,C, 476.02 . AS_QUALapprox=|513|57|0;AS_VarDP=0|13|0|0;DP=27;QUALapprox=513;RAW_GT_COUNT=0,0,1;RAW_MQandDP=89073,27;VarDP=13 GT:AD:DP:GQ:PL:SB 1/1:0,13,0,0:13:39:513,39,0,456,57,621,534,57,645,723:0,0,2,11 +chrX 1424854 . C . . END=1424938 GT:DP:GQ:MIN_DP:PL 0/0:26:0:26:0,0,342 +chrX 1424939 . A C, 1591.01 . AS_QUALapprox=|1665|0;AS_VarDP=0|37|0;DP=45;QUALapprox=1665;RAW_GT_COUNT=0,0,1;RAW_MQandDP=143132,45;VarDP=37 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,37,0:37:99:0|1:1424939_A_C:1665,111,0,1665,111,1665:1424939:0,0,18,19 +chrX 1424940 . A . . END=1424953 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,1023 +chrX 1424954 . C . . END=1424963 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,118,1451 +chrX 1424964 . A G, 1676.05 . AS_QUALapprox=|1690|0;AS_VarDP=8|41|0;BaseQRankSum=0.278;DP=53;MQRankSum=0.167;QUALapprox=1690;RAW_GT_COUNT=0,0,1;RAW_MQandDP=171932,53;ReadPosRankSum=2.666;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:8,41,0:49:29:0|1:1424939_A_C:1690,29,0,1704,123,1798:1424939:6,2,20,21 +chrX 1424965 . T . . END=1424966 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,120,1800 +chrX 1424967 . CA C, 1676.02 . AS_QUALapprox=|1690|0;AS_VarDP=8|41|0;BaseQRankSum=0.868;DP=52;MQRankSum=0.167;QUALapprox=1690;RAW_GT_COUNT=0,0,1;RAW_MQandDP=168332,52;ReadPosRankSum=2.382;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:8,41,0:49:29:0|1:1424939_A_C:1690,29,0,1704,123,1798:1424939:6,2,20,21 +chrX 1424969 . TCCC T, 1670 . AS_QUALapprox=|1684|0;AS_VarDP=10|41|0;BaseQRankSum=0.696;DP=54;MQRankSum=-0.148;QUALapprox=1684;RAW_GT_COUNT=0,0,1;RAW_MQandDP=175532,54;ReadPosRankSum=2.192;VarDP=51 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:10,41,0:51:25:0|1:1424939_A_C:1684,25,0,1700,123,1798:1424939:8,2,20,21 +chrX 1424973 . T . . END=1424980 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 1424981 . TCCATCTATCCACCTACCATCCATCCATCCATCCATCCATCCTTCCTC T, 1927.03 . AS_QUALapprox=|1941|0;AS_VarDP=0|44|0;DP=56;QUALapprox=1941;RAW_GT_COUNT=0,0,1;RAW_MQandDP=182732,56;VarDP=44 GT:AD:DP:GQ:PL:SB 1/1:0,44,0:44:99:1941,135,0,1941,135,1941:0,0,25,19 +chrX 1425029 . C . . END=1425067 GT:DP:GQ:MIN_DP:PL 0/0:54:21:46:0,21,315 +chrX 1425068 . C G, 1771.06 . AS_QUALapprox=|1785|0;AS_VarDP=0|57|0;DP=58;QUALapprox=1785;RAW_GT_COUNT=0,0,1;RAW_MQandDP=189932,58;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1785,170,0,1785,170,1785:0,0,28,29 +chrX 1425069 . C . . END=1425141 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 1425142 . A G, 1558.06 . AS_QUALapprox=|1572|0;AS_VarDP=0|49|0;DP=55;QUALapprox=1572;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1572,146,0,1572,146,1572:0,0,26,23 +chrX 1425143 . T . . END=1425190 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1425191 . G A, 2075.06 . AS_QUALapprox=|2089|0;AS_VarDP=0|64|0;DP=71;QUALapprox=2089;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;VarDP=64 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:2089,192,0,2089,192,2089:0,0,33,31 +chrX 1425192 . T . . END=1425378 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 1425379 . A C, 1915.06 . AS_QUALapprox=|1929|0;AS_VarDP=0|58|0;DP=63;QUALapprox=1929;RAW_GT_COUNT=0,0,1;RAW_MQandDP=224964,63;VarDP=58 GT:AD:DP:GQ:PL:SB 1/1:0,58,0:58:99:1929,174,0,1929,174,1929:0,0,32,26 +chrX 1425380 . C . . END=1425428 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1425429 . G C, 2227.06 . AS_QUALapprox=|2241|0;AS_VarDP=0|69|0;DP=74;QUALapprox=2241;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;VarDP=69 GT:AD:DP:GQ:PL:SB 1/1:0,69,0:69:99:2241,206,0,2241,206,2241:0,0,40,29 +chrX 1425430 . C . . END=1425439 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 1425440 . C T, 2133.06 . AS_QUALapprox=|2147|0;AS_VarDP=0|65|0;DP=71;QUALapprox=2147;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;VarDP=65 GT:AD:DP:GQ:PL:SB 1/1:0,65,0:65:99:2147,195,0,2147,195,2147:0,0,38,27 +chrX 1425441 . G . . END=1425777 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,120,1800 +chrX 1425778 . G A, 1916.06 . AS_QUALapprox=|1930|0;AS_VarDP=0|57|0;DP=57;QUALapprox=1930;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1930,171,0,1930,171,1930:0,0,19,38 +chrX 1425779 . G . . END=1425852 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,111,1391 +chrX 1425853 . T C, 1684.06 . AS_QUALapprox=|1698|0;AS_VarDP=0|50|0;DP=51;QUALapprox=1698;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1698,150,0,1698,150,1698:0,0,19,31 +chrX 1425854 . A . . END=1425945 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 1425946 . A G, 1821.06 . AS_QUALapprox=|1835|0;AS_VarDP=0|56|0;DP=59;QUALapprox=1835;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1835,168,0,1835,168,1835:0,0,30,26 +chrX 1425947 . C . . END=1425990 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 1425991 . C T, 2208.06 . AS_QUALapprox=|2222|0;AS_VarDP=0|69|0;DP=71;QUALapprox=2222;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;VarDP=69 GT:AD:DP:GQ:PL:SB 1/1:0,69,0:69:99:2222,207,0,2222,207,2222:0,0,40,29 +chrX 1425992 . T . . END=1426158 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 1426159 . A G, 1875.06 . AS_QUALapprox=|1889|0;AS_VarDP=0|62|0;DP=64;QUALapprox=1889;RAW_GT_COUNT=0,0,1;RAW_MQandDP=229163,64;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:0,62,0:62:99:1889,185,0,1889,185,1889:0,0,35,27 +chrX 1426160 . G . . END=1426219 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1426220 . T C, 1980.06 . AS_QUALapprox=|1994|0;AS_VarDP=0|66|0;DP=67;QUALapprox=1994;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=66 GT:AD:DP:GQ:PL:SB 1/1:0,66,0:66:99:1994,197,0,1994,197,1994:0,0,26,40 +chrX 1426221 . G . . END=1426270 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1426271 . A G, 2286.06 . AS_QUALapprox=|2300|0;AS_VarDP=0|72|0;DP=74;QUALapprox=2300;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;VarDP=72 GT:AD:DP:GQ:PL:SB 1/1:0,72,0:72:99:2300,216,0,2300,216,2300:0,0,29,43 +chrX 1426272 . C . . END=1426315 GT:DP:GQ:MIN_DP:PL 0/0:73:99:73:0,120,1800 +chrX 1426316 . C T, 945.64 . AS_QUALapprox=|953|0;AS_VarDP=41|35|0;BaseQRankSum=2.149;DP=80;MQRankSum=0.000;QUALapprox=953;RAW_GT_COUNT=0,1,0;RAW_MQandDP=288000,80;ReadPosRankSum=-0.521;VarDP=76 GT:AD:DP:GQ:PL:SB 0/1:41,35,0:76:99:953,0,1603,1077,1708,2784:17,24,14,21 +chrX 1426317 . A . . END=1426321 GT:DP:GQ:MIN_DP:PL 0/0:76:99:76:0,120,1800 +chrX 1426322 . C T, 1031.64 . AS_QUALapprox=|1039|0;AS_VarDP=36|41|0;BaseQRankSum=-0.894;DP=83;MQRankSum=0.000;QUALapprox=1039;RAW_GT_COUNT=0,1,0;RAW_MQandDP=298800,83;ReadPosRankSum=0.878;VarDP=77 GT:AD:DP:GQ:PL:SB 0/1:36,41,0:77:99:1039,0,1379,1147,1501,2648:15,21,17,24 +chrX 1426323 . G . . END=1426397 GT:DP:GQ:MIN_DP:PL 0/0:75:99:75:0,120,1800 +chrX 1426398 . A G, 843.64 . AS_QUALapprox=|851|0;AS_VarDP=30|35|0;BaseQRankSum=-1.727;DP=67;MQRankSum=0.000;QUALapprox=851;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=0.816;VarDP=65 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:30,35,0:65:99:0|1:1426398_A_G:851,0,1134,942,1239,2180:1426398:18,12,18,17 +chrX 1426399 . T . . END=1426405 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 1426406 . G A, 856.64 . AS_QUALapprox=|864|0;AS_VarDP=34|32|0;BaseQRankSum=0.280;DP=70;MQRankSum=0.000;QUALapprox=864;RAW_GT_COUNT=0,1,0;RAW_MQandDP=252000,70;ReadPosRankSum=-1.538;VarDP=66 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:34,32,0:66:99:1|0:1426398_A_G:864,0,1290,966,1386,2353:1426398:17,17,21,11 +chrX 1426407 . T . . END=1426721 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,115,1588 +chrX 1426722 . G A, 745.64 . AS_QUALapprox=|753|0;AS_VarDP=18|27|0;BaseQRankSum=-1.894;DP=47;MQRankSum=0.000;QUALapprox=753;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=0.499;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:18,27,0:45:99:753,0,653,807,735,1542:9,9,13,14 +chrX 1426723 . G . . END=1426734 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,120,1800 +chrX 1426735 . C T, 420.64 . AS_QUALapprox=|428|0;AS_VarDP=29|17|0;BaseQRankSum=1.680;DP=46;MQRankSum=0.000;QUALapprox=428;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=0.547;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:29,17,0:46:99:428,0,1135,515,1186,1701:15,14,8,9 +chrX 1426736 . A . . END=1426793 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,108,1371 +chrX 1426794 . T C, 723.64 . AS_QUALapprox=|731|0;AS_VarDP=21|25|0;BaseQRankSum=2.854;DP=48;MQRankSum=0.000;QUALapprox=731;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=0.839;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:21,25,0:46:99:731,0,532,794,607,1401:10,11,13,12 +chrX 1426795 . A . . END=1426890 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,104,1368 +chrX 1426891 . G T, 876.64 . AS_QUALapprox=|884|0;AS_VarDP=27|23|0;BaseQRankSum=-2.462;DP=51;MQRankSum=-1.043;QUALapprox=884;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180841,51;ReadPosRankSum=-0.812;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,23,0:50:99:0|1:1426891_G_T:884,0,1064,965,1134,2099:1426891:12,15,9,14 +chrX 1426892 . A . . END=1426895 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 1426896 . T C, 876.64 . AS_QUALapprox=|884|0;AS_VarDP=27|23|0;BaseQRankSum=-0.663;DP=50;MQRankSum=-1.043;QUALapprox=884;RAW_GT_COUNT=0,1,0;RAW_MQandDP=177241,50;ReadPosRankSum=-0.477;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,23,0:50:99:0|1:1426891_G_T:884,0,1064,965,1134,2099:1426891:12,15,9,14 +chrX 1426897 . C . . END=1426914 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,120,1800 +chrX 1426915 . A G, 703.64 . AS_QUALapprox=|711|0;AS_VarDP=29|19|0;BaseQRankSum=-1.749;DP=48;MQRankSum=-1.193;QUALapprox=711;RAW_GT_COUNT=0,1,0;RAW_MQandDP=170041,48;ReadPosRankSum=0.792;VarDP=48 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,19,0:48:99:0|1:1426891_G_T:711,0,1161,798,1218,2016:1426891:13,16,6,13 +chrX 1426916 . G . . END=1426937 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,102,1425 +chrX 1426938 . A G, 805.64 . AS_QUALapprox=|813|0;AS_VarDP=23|21|0;BaseQRankSum=-0.975;DP=44;MQRankSum=-1.001;QUALapprox=813;RAW_GT_COUNT=0,1,0;RAW_MQandDP=155641,44;ReadPosRankSum=-0.219;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,21,0:44:99:0|1:1426891_G_T:813,0,903,882,966,1848:1426891:12,11,7,14 +chrX 1426939 . T C, 805.64 . AS_QUALapprox=|813|0;AS_VarDP=23|21|0;BaseQRankSum=0.447;DP=45;MQRankSum=-1.001;QUALapprox=813;RAW_GT_COUNT=0,1,0;RAW_MQandDP=159241,45;ReadPosRankSum=-0.219;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,21,0:44:99:0|1:1426891_G_T:813,0,903,882,966,1848:1426891:12,11,7,14 +chrX 1426940 . G . . END=1427001 GT:DP:GQ:MIN_DP:PL 0/0:44:93:44:0,93,1395 +chrX 1427002 . A AAAAC, 440.60 . AS_QUALapprox=|448|0;AS_VarDP=23|13|0;BaseQRankSum=0.573;DP=49;MQRankSum=-1.272;QUALapprox=448;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176164,49;ReadPosRankSum=2.044;VarDP=36 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,13,0:36:99:0|1:1427002_A_AAAAC:448,0,886,518,925,1443:1427002:13,10,6,7 +chrX 1427003 . A . . END=1427007 GT:DP:GQ:MIN_DP:PL 0/0:48:96:48:0,96,1440 +chrX 1427008 . A . . END=1427008 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,883 +chrX 1427009 . G A, 546.04 . AS_QUALapprox=|834|0;AS_VarDP=24|23|0;BaseQRankSum=-1.207;DP=49;MQRankSum=-1.272;QUALapprox=834;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176164,49;ReadPosRankSum=1.714;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,23,0:47:99:0|1:1427002_A_AAAAC:834,0,881,735,939,1663:1427002:11,12,6,7 +chrX 1427010 . A . . END=1427036 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 1427037 . C T, 633.64 . AS_QUALapprox=|641|0;AS_VarDP=33|26|0;BaseQRankSum=-0.762;DP=60;MQRankSum=-1.092;QUALapprox=641;RAW_GT_COUNT=0,1,0;RAW_MQandDP=215764,60;ReadPosRankSum=0.901;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:33,26,0:59:99:641,0,895,740,973,1713:20,13,12,14 +chrX 1427038 . G . . END=1427157 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 1427158 . T G, 516.64 . AS_QUALapprox=|524|0;AS_VarDP=33|22|0;BaseQRankSum=-0.511;DP=58;MQRankSum=0.000;QUALapprox=524;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=0.533;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:33,22,0:55:99:524,0,896,623,962,1584:19,14,13,9 +chrX 1427159 . G . . END=1427223 GT:DP:GQ:MIN_DP:PL 0/0:42:80:42:0,80,1026 +chrX 1427224 . C G, 354.64 . AS_QUALapprox=|362|0;AS_VarDP=24|14|0;BaseQRankSum=1.147;DP=38;MQRankSum=0.818;QUALapprox=362;RAW_GT_COUNT=0,1,0;RAW_MQandDP=135504,38;ReadPosRankSum=-1.302;VarDP=38 GT:AD:DP:GQ:PL:SB 0/1:24,14,0:38:99:362,0,654,433,696,1130:12,12,7,7 +chrX 1427225 . T . . END=1427304 GT:DP:GQ:MIN_DP:PL 0/0:47:87:47:0,87,1132 +chrX 1427305 . C T, 638.64 . AS_QUALapprox=|646|0;AS_VarDP=28|23|0;BaseQRankSum=1.890;DP=52;MQRankSum=0.000;QUALapprox=646;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=1.676;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:28,23,0:51:99:646,0,778,730,847,1577:13,15,10,13 +chrX 1427306 . T . . END=1427401 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,118,1800 +chrX 1427402 . A G, 574.64 . AS_QUALapprox=|582|0;AS_VarDP=39|25|0;BaseQRankSum=-2.184;DP=66;MQRankSum=0.000;QUALapprox=582;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=0.344;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:39,25,0:64:99:582,0,1121,699,1196,1895:23,16,13,12 +chrX 1427403 . A . . END=1427476 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 1427477 . A G, 695.64 . AS_QUALapprox=|703|0;AS_VarDP=31|29|0;BaseQRankSum=-1.526;DP=60;MQRankSum=1.001;QUALapprox=703;RAW_GT_COUNT=0,1,0;RAW_MQandDP=214000,60;ReadPosRankSum=0.215;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:31,29,0:60:99:703,0,878,796,964,1760:19,12,12,17 +chrX 1427478 . C . . END=1427503 GT:DP:GQ:MIN_DP:PL 0/0:60:20:56:0,20,1710 +chrX 1427504 . T . . END=1427504 GT:DP:GQ:MIN_DP:PL 0/0:66:14:66:0,14,2375 +chrX 1427505 . G . . END=1427523 GT:DP:GQ:MIN_DP:PL 0/0:58:93:58:0,93,1658 +chrX 1427524 . C G, 719.64 . AS_QUALapprox=|727|0;AS_VarDP=30|27|0;BaseQRankSum=1.696;DP=58;MQRankSum=1.693;QUALapprox=727;RAW_GT_COUNT=0,1,0;RAW_MQandDP=202346,58;ReadPosRankSum=0.176;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:30,27,0:57:99:727,0,752,816,833,1649:11,19,12,15 +chrX 1427525 . G . . END=1427707 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1427708 . T C, 929.64 . AS_QUALapprox=|937|0;AS_VarDP=39|36|0;BaseQRankSum=1.062;DP=76;MQRankSum=0.000;QUALapprox=937;RAW_GT_COUNT=0,1,0;RAW_MQandDP=273600,76;ReadPosRankSum=-0.589;VarDP=75 GT:AD:DP:GQ:PL:SB 0/1:39,36,0:75:99:937,0,1006,1054,1114,2167:22,17,21,15 +chrX 1427709 . G . . END=1427898 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1427899 . G A, 701.64 . AS_QUALapprox=|709|0;AS_VarDP=32|28|0;BaseQRankSum=1.126;DP=64;MQRankSum=0.000;QUALapprox=709;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=-0.563;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:32,28,0:60:99:709,0,768,804,852,1656:17,15,13,15 +chrX 1427900 . C . . END=1427982 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 1427983 . A G, 762.64 . AS_QUALapprox=|770|0;AS_VarDP=32|30|0;BaseQRankSum=-0.801;DP=64;MQRankSum=0.000;QUALapprox=770;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=0.099;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:32,30,0:62:99:770,0,876,866,966,1832:12,20,12,18 +chrX 1427984 . C . . END=1428176 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 1428177 . G C, 1283.64 . AS_QUALapprox=|1291|0;AS_VarDP=32|37|0;BaseQRankSum=-0.770;DP=70;MQRankSum=0.000;QUALapprox=1291;RAW_GT_COUNT=0,1,0;RAW_MQandDP=252000,70;ReadPosRankSum=1.625;VarDP=69 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:32,37,0:69:99:0|1:1428177_G_C:1291,0,1129,1388,1240,2628:1428177:15,17,18,19 +chrX 1428178 . A . . END=1428197 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 1428198 . C A, 1168.64 . AS_QUALapprox=|1176|0;AS_VarDP=28|33|0;BaseQRankSum=0.587;DP=61;MQRankSum=0.000;QUALapprox=1176;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=0.541;VarDP=61 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,33,0:61:99:0|1:1428177_G_C:1176,0,1024,1261,1124,2384:1428177:12,16,16,17 +chrX 1428199 . G . . END=1428308 GT:DP:GQ:MIN_DP:PL 0/0:46:58:46:0,58,902 +chrX 1428309 . G A, 238.64 . AS_QUALapprox=|246|0;AS_VarDP=21|10|0;BaseQRankSum=2.074;DP=33;MQRankSum=0.000;QUALapprox=246;RAW_GT_COUNT=0,1,0;RAW_MQandDP=118800,33;ReadPosRankSum=0.486;VarDP=31 GT:AD:DP:GQ:PL:SB 0/1:21,10,0:31:99:246,0,492,308,522,830:7,14,8,2 +chrX 1428310 . C . . END=1428321 GT:DP:GQ:MIN_DP:PL 0/0:33:64:33:0,64,899 +chrX 1428322 . CAAA C,CAA, 1028.02 . AS_QUALapprox=|733|477|0;AS_VarDP=0|20|13|0;DP=44;QUALapprox=1045;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158400,44;VarDP=33 GT:AD:DP:GQ:PL:SB 1/2:0,20,13,0:33:99:1045,312,498,645,0,568,1031,449,649,1112:0,0,18,15 +chrX 1428326 . A . . END=1428595 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,114,1710 +chrX 1428596 . G A, 2196.06 . AS_QUALapprox=|2210|0;AS_VarDP=1|68|0;BaseQRankSum=-0.396;DP=71;MQRankSum=-0.257;QUALapprox=2210;RAW_GT_COUNT=0,0,1;RAW_MQandDP=243318,71;ReadPosRankSum=1.231;VarDP=69 GT:AD:DP:GQ:PL:SB 1/1:1,68,0:69:99:2210,173,0,2213,204,2245:0,1,29,39 +chrX 1428597 . A . . END=1428645 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 1428646 . C CAAAT,CAAATAAATAAATAAATAAAT,CAAATAAATAAATAAATAAATAAAT, 2446.02 . AS_QUALapprox=|167|1875|2052|0;AS_VarDP=0|1|12|15|0;DP=80;QUALapprox=2463;RAW_GT_COUNT=0,0,1;RAW_MQandDP=272798,80;VarDP=28 GT:AD:DP:GQ:PL:SB 2/3:0,1,12,15,0:28:99:2463,2307,2296,712,661,588,549,498,0,411,2353,2302,707,544,2348:0,0,11,17 +chrX 1428647 . A . . END=1428742 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,119,1728 +chrX 1428743 . T C, 1776.06 . AS_QUALapprox=|1790|0;AS_VarDP=0|57|0;DP=60;QUALapprox=1790;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1790,170,0,1790,170,1790:0,0,29,28 +chrX 1428744 . C . . END=1428886 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,100,1220 +chrX 1428887 . C CTTAA, 639.60 . AS_QUALapprox=|647|0;AS_VarDP=22|17|0;BaseQRankSum=0.895;DP=45;MQRankSum=0.000;QUALapprox=647;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=-0.411;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:22,17,0:39:99:647,0,847,714,898,1612:10,12,6,11 +chrX 1428888 . T . . END=1428958 GT:DP:GQ:MIN_DP:PL 0/0:46:96:46:0,96,1440 +chrX 1428959 . C T, 729.64 . AS_QUALapprox=|737|0;AS_VarDP=21|28|0;BaseQRankSum=-0.025;DP=52;MQRankSum=-0.825;QUALapprox=737;RAW_GT_COUNT=0,1,0;RAW_MQandDP=186409,52;ReadPosRankSum=-0.131;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:21,28,0:49:99:737,0,492,799,576,1375:15,6,16,12 +chrX 1428960 . G . . END=1429137 GT:DP:GQ:MIN_DP:PL 0/0:47:93:47:0,93,1270 +chrX 1429138 . G A, 653.64 . AS_QUALapprox=|661|0;AS_VarDP=20|26|0;BaseQRankSum=-0.620;DP=47;MQRankSum=1.184;QUALapprox=661;RAW_GT_COUNT=0,1,0;RAW_MQandDP=168516,47;ReadPosRankSum=0.465;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:20,26,0:46:99:661,0,493,721,570,1291:10,10,11,15 +chrX 1429139 . C . . END=1429557 GT:DP:GQ:MIN_DP:PL 0/0:47:83:47:0,83,1247 +chrX 1429558 . G A, 769.64 . AS_QUALapprox=|777|0;AS_VarDP=34|31|0;BaseQRankSum=-2.474;DP=68;MQRankSum=0.000;QUALapprox=777;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=-0.742;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:34,31,0:65:99:777,0,967,879,1060,1939:20,14,14,17 +chrX 1429559 . A . . END=1430076 GT:DP:GQ:MIN_DP:PL 0/0:56:88:56:0,88,1359 +chrX 1430077 . C T, 766.64 . AS_QUALapprox=|774|0;AS_VarDP=19|29|0;BaseQRankSum=-0.213;DP=49;MQRankSum=0.000;QUALapprox=774;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=-2.099;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:19,29,0:48:99:774,0,451,831,538,1369:10,9,16,13 +chrX 1430078 . G . . END=1430276 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,100,1673 +chrX 1430277 . A G, 695.64 . AS_QUALapprox=|703|0;AS_VarDP=28|19|0;BaseQRankSum=-0.336;DP=48;MQRankSum=0.000;QUALapprox=703;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=0.065;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,19,0:47:99:0|1:1430277_A_G:703,0,1117,787,1174,1961:1430277:17,11,10,9 +chrX 1430278 . T . . END=1430283 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,120,1800 +chrX 1430284 . T A, 660.64 . AS_QUALapprox=|668|0;AS_VarDP=29|18|0;BaseQRankSum=0.832;DP=48;MQRankSum=0.000;QUALapprox=668;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=0.066;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,18,0:47:99:0|1:1430277_A_G:668,0,1152,755,1206,1961:1430277:17,12,9,9 +chrX 1430285 . G . . END=1430417 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,113,1607 +chrX 1430418 . T C, 762.64 . AS_QUALapprox=|770|0;AS_VarDP=33|28|0;BaseQRankSum=0.659;DP=64;MQRankSum=0.000;QUALapprox=770;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=0.181;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:33,28,0:61:99:770,0,943,869,1027,1896:17,16,15,13 +chrX 1430419 . A . . END=1430702 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 1430703 . C T, 2146.06 . AS_QUALapprox=|2160|0;AS_VarDP=0|64|0;DP=65;QUALapprox=2160;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=64 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:2160,192,0,2160,192,2160:0,0,33,31 +chrX 1430704 . T . . END=1430884 GT:DP:GQ:MIN_DP:PL 0/0:74:99:74:0,120,1800 +chrX 1430885 . AT A, 896.60 . AS_QUALapprox=|904|0;AS_VarDP=34|32|0;BaseQRankSum=-0.742;DP=70;MQRankSum=0.000;QUALapprox=904;RAW_GT_COUNT=0,1,0;RAW_MQandDP=252000,70;ReadPosRankSum=0.473;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:34,32,0:66:99:904,0,942,1006,1039,2045:17,17,15,17 +chrX 1430887 . T . . END=1430964 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1636 +chrX 1430965 . T C, 442.64 . AS_QUALapprox=|450|0;AS_VarDP=35|20|0;BaseQRankSum=-0.780;DP=63;MQRankSum=0.000;QUALapprox=450;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=-1.461;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:35,20,0:55:99:450,0,1011,555,1071,1626:20,15,10,10 +chrX 1430966 . A . . END=1431097 GT:DP:GQ:MIN_DP:PL 0/0:46:80:46:0,80,1155 +chrX 1431098 . T C, 353.64 . AS_QUALapprox=|361|0;AS_VarDP=30|17|0;BaseQRankSum=-0.432;DP=50;MQRankSum=0.000;QUALapprox=361;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=0.388;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:30,17,0:47:99:361,0,783,450,833,1283:13,17,9,8 +chrX 1431099 . A . . END=1431354 GT:DP:GQ:MIN_DP:PL 0/0:63:98:63:0,98,1392 +chrX 1431355 . T A, 583.64 . AS_QUALapprox=|591|0;AS_VarDP=33|23|0;BaseQRankSum=0.909;DP=56;MQRankSum=0.000;QUALapprox=591;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=0.625;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:33,23,0:56:99:0|1:1431355_T_A:591,0,1258,690,1327,2018:1431355:17,16,15,8 +chrX 1431356 . A . . END=1431356 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1431357 . T C, 723.64 . AS_QUALapprox=|731|0;AS_VarDP=25|31|0;BaseQRankSum=-1.048;DP=56;MQRankSum=0.000;QUALapprox=731;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-0.453;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:25,31,0:56:99:1|0:1431355_T_A:731,0,877,805,968,1773:1431355:16,9,16,15 +chrX 1431358 . A . . END=1431450 GT:DP:GQ:MIN_DP:PL 0/0:65:81:65:0,81,1657 +chrX 1431451 . A G, 916.64 . AS_QUALapprox=|924|0;AS_VarDP=30|34|0;BaseQRankSum=1.108;DP=68;MQRankSum=0.000;QUALapprox=924;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=-0.834;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:30,34,0:64:99:924,0,771,1014,872,1886:17,13,14,20 +chrX 1431452 . T . . END=1431490 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 1431491 . CTACT C, 1129.60 . AS_QUALapprox=|1137|0;AS_VarDP=37|30|0;BaseQRankSum=2.042;DP=69;MQRankSum=0.000;QUALapprox=1137;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=1.031;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:37,30,0:67:99:1137,0,1447,1249,1537,2786:20,17,15,15 +chrX 1431496 . T . . END=1431639 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 1431640 . T A, 2376.06 . AS_QUALapprox=|2390|0;AS_VarDP=0|72|0;DP=74;QUALapprox=2390;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;VarDP=72 GT:AD:DP:GQ:PL:SB 1/1:0,72,0:72:99:2390,216,0,2390,216,2390:0,0,29,43 +chrX 1431641 . T . . END=1431803 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,111,1519 +chrX 1431804 . G A, 743.64 . AS_QUALapprox=|751|0;AS_VarDP=37|22|0;BaseQRankSum=1.268;DP=60;MQRankSum=0.000;QUALapprox=751;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=0.368;VarDP=59 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:37,22,0:59:99:0|1:1431804_G_A:751,0,1456,862,1522,2385:1431804:14,23,12,10 +chrX 1431805 . C . . END=1431820 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 1431821 . A T, 666.64 . AS_QUALapprox=|674|0;AS_VarDP=38|20|0;BaseQRankSum=0.078;DP=58;MQRankSum=0.000;QUALapprox=674;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-0.573;VarDP=58 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:38,20,0:58:99:0|1:1431804_G_A:674,0,1495,789,1555,2344:1431804:15,23,8,12 +chrX 1431822 . A . . END=1431866 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 1431867 . G C, 1589.64 . AS_QUALapprox=|1597|0;AS_VarDP=21|41|0;BaseQRankSum=1.534;DP=63;MQRankSum=0.000;QUALapprox=1597;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=0.164;VarDP=62 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,41,0:62:99:0|1:1431867_G_C:1597,0,685,1660,809,2469:1431867:9,12,17,24 +chrX 1431868 . T . . END=1431885 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 1431886 . G C, 1688.64 . AS_QUALapprox=|1696|0;AS_VarDP=20|44|0;BaseQRankSum=2.042;DP=66;MQRankSum=0.000;QUALapprox=1696;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=-1.246;VarDP=64 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:20,44,0:64:99:0|1:1431867_G_C:1696,0,605,1755,737,2493:1431867:7,13,24,20 +chrX 1431887 . A . . END=1432076 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1432077 . C G, 670.64 . AS_QUALapprox=|678|0;AS_VarDP=32|26|0;BaseQRankSum=0.023;DP=59;MQRankSum=0.000;QUALapprox=678;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=0.493;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:32,26,0:58:99:678,0,862,773,940,1713:14,18,15,11 +chrX 1432078 . C . . END=1432655 GT:DP:GQ:MIN_DP:PL 0/0:61:81:61:0,81,1263 +chrX 1432656 . C T, 536.64 . AS_QUALapprox=|544|0;AS_VarDP=21|21|0;BaseQRankSum=0.112;DP=44;MQRankSum=-0.507;QUALapprox=544;RAW_GT_COUNT=0,1,0;RAW_MQandDP=152349,44;ReadPosRankSum=0.176;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:21,21,0:42:99:544,0,529,607,592,1199:6,15,13,8 +chrX 1432657 . G . . END=1432747 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,103,1368 +chrX 1432748 . G C, 709.64 . AS_QUALapprox=|717|0;AS_VarDP=38|34|0;BaseQRankSum=-0.182;DP=77;MQRankSum=-0.405;QUALapprox=717;RAW_GT_COUNT=0,1,0;RAW_MQandDP=255427,77;ReadPosRankSum=0.158;VarDP=72 GT:AD:DP:GQ:PL:SB 0/1:38,34,0:72:99:717,0,1144,831,1243,2074:12,26,17,17 +chrX 1432749 . A . . END=1432759 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 1432760 . T C, 2372.64 . AS_QUALapprox=|2380|0;AS_VarDP=14|59|0;BaseQRankSum=2.046;DP=77;MQRankSum=0.380;QUALapprox=2380;RAW_GT_COUNT=0,1,0;RAW_MQandDP=258111,77;ReadPosRankSum=-0.939;VarDP=73 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:14,59,0:73:99:0|1:1432760_T_C:2380,0,322,2422,500,2922:1432760:6,8,25,34 +chrX 1432761 . G . . END=1432761 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,120,1800 +chrX 1432762 . C G, 2498.64 . AS_QUALapprox=|2506|0;AS_VarDP=14|62|0;BaseQRankSum=2.045;DP=81;MQRankSum=0.285;QUALapprox=2506;RAW_GT_COUNT=0,1,0;RAW_MQandDP=271027,81;ReadPosRankSum=-1.205;VarDP=76 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:14,62,0:76:99:0|1:1432760_T_C:2506,0,313,2548,500,3048:1432760:6,8,25,37 +chrX 1432763 . A . . END=1432785 GT:DP:GQ:MIN_DP:PL 0/0:78:99:78:0,120,1800 +chrX 1432786 . G A, 2381.64 . AS_QUALapprox=|2389|0;AS_VarDP=21|60|0;BaseQRankSum=2.708;DP=87;MQRankSum=-1.614;QUALapprox=2389;RAW_GT_COUNT=0,1,0;RAW_MQandDP=296886,87;ReadPosRankSum=-0.643;VarDP=81 GT:AD:DP:GQ:PL:SB 0/1:21,60,0:81:99:2389,0,587,2452,767,3219:10,11,21,39 +chrX 1432787 . C . . END=1432788 GT:DP:GQ:MIN_DP:PL 0/0:80:99:80:0,120,1800 +chrX 1432789 . C A, 2479.64 . AS_QUALapprox=|2487|0;AS_VarDP=20|62|0;BaseQRankSum=2.606;DP=92;MQRankSum=-1.548;QUALapprox=2487;RAW_GT_COUNT=0,1,0;RAW_MQandDP=314886,92;ReadPosRankSum=-0.931;VarDP=82 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:20,62,0:82:99:0|1:1432760_T_C:2487,0,504,2546,690,3236:1432760:9,11,22,40 +chrX 1432790 . C . . END=1432815 GT:DP:GQ:MIN_DP:PL 0/0:89:99:89:0,120,1800 +chrX 1432816 . G A, 279.64 . AS_QUALapprox=|287|0;AS_VarDP=75|25|0;BaseQRankSum=-1.461;DP=112;MQRankSum=0.464;QUALapprox=287;RAW_GT_COUNT=0,1,0;RAW_MQandDP=384039,112;ReadPosRankSum=-0.514;VarDP=100 GT:AD:DP:GQ:PL:SB 0/1:75,25,0:100:99:287,0,2764,511,2836,3347:30,45,9,16 +chrX 1432817 . A . . END=1432823 GT:DP:GQ:MIN_DP:PL 0/0:104:99:104:0,120,1800 +chrX 1432824 . G A, 139.64 . AS_QUALapprox=|147|0;AS_VarDP=101|13|0;BaseQRankSum=0.532;DP=125;MQRankSum=-0.101;QUALapprox=147;RAW_GT_COUNT=0,1,0;RAW_MQandDP=426839,125;ReadPosRankSum=-0.858;VarDP=114 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:101,13,0:114:99:0|1:1432824_G_A:147,0,3908,450,3946,4396:1432824:42,59,8,5 +chrX 1432825 . T . . END=1432858 GT:DP:GQ:MIN_DP:PL 0/0:118:99:118:0,120,1800 +chrX 1432859 . C A, 388.64 . AS_QUALapprox=|396|0;AS_VarDP=102|22|0;BaseQRankSum=1.322;DP=137;MQRankSum=-1.047;QUALapprox=396;RAW_GT_COUNT=0,1,0;RAW_MQandDP=477149,137;ReadPosRankSum=-0.159;VarDP=124 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:102,22,0:124:99:0|1:1432824_G_A:396,0,3371,701,3436,4137:1432824:45,57,15,7 +chrX 1432860 . G . . END=1432954 GT:DP:GQ:MIN_DP:PL 0/0:120:99:120:0,120,1800 +chrX 1432955 . G A, 1129.64 . AS_QUALapprox=|1137|0;AS_VarDP=38|46|0;BaseQRankSum=1.415;DP=93;MQRankSum=0.203;QUALapprox=1137;RAW_GT_COUNT=0,1,0;RAW_MQandDP=315168,93;ReadPosRankSum=0.342;VarDP=84 GT:AD:DP:GQ:PL:SB 0/1:38,46,0:84:99:1137,0,835,1250,973,2222:22,16,27,19 +chrX 1432956 . G . . END=1432965 GT:DP:GQ:MIN_DP:PL 0/0:82:99:82:0,120,1800 +chrX 1432966 . C CGG, 21.60 . AS_QUALapprox=|29|0;AS_VarDP=78|7|0;BaseQRankSum=-1.069;DP=95;MQRankSum=-2.195;QUALapprox=29;RAW_GT_COUNT=0,1,0;RAW_MQandDP=318172,95;ReadPosRankSum=-0.187;VarDP=85 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:78,7,0:85:29:0|1:1432966_C_CGG:29,0,3109,263,3130,3393:1432966:49,29,2,5 +chrX 1432967 . A G, 2187.64 . AS_QUALapprox=|2195|0;AS_VarDP=29|57|0;BaseQRankSum=-0.645;DP=94;MQRankSum=-2.506;QUALapprox=2195;RAW_GT_COUNT=0,1,0;RAW_MQandDP=314572,94;ReadPosRankSum=1.063;VarDP=86 GT:AD:DP:GQ:PL:SB 0/1:29,57,0:86:99:2195,0,984,2282,1155,3437:19,10,32,25 +chrX 1432968 . T G, 1728.64 . AS_QUALapprox=|1736|0;AS_VarDP=36|49|0;BaseQRankSum=0.964;DP=93;MQRankSum=-1.198;QUALapprox=1736;RAW_GT_COUNT=0,1,0;RAW_MQandDP=310972,93;ReadPosRankSum=0.771;VarDP=85 GT:AD:DP:GQ:PL:SB 0/1:36,49,0:85:99:1736,0,1271,1844,1418,3262:21,15,30,19 +chrX 1432969 . GCA G, 21.60 . AS_QUALapprox=|29|0;AS_VarDP=78|7|0;BaseQRankSum=-1.152;DP=93;MQRankSum=-2.195;QUALapprox=29;RAW_GT_COUNT=0,1,0;RAW_MQandDP=310072,93;ReadPosRankSum=-0.500;VarDP=85 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:78,7,0:85:29:0|1:1432966_C_CGG:29,0,3109,263,3130,3393:1432966:49,29,2,5 +chrX 1432972 . C . . END=1433499 GT:DP:GQ:MIN_DP:PL 0/0:48:47:48:0,47,923 +chrX 1433500 . C . . END=1433500 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,804 +chrX 1433501 . TA T,TAA, 233.02 . AS_QUALapprox=|94|116|0;AS_VarDP=0|7|9|0;DP=35;QUALapprox=250;RAW_GT_COUNT=0,0,1;RAW_MQandDP=124130,35;VarDP=16 GT:AD:DP:GQ:PL:SB 1/2:0,7,9,0:16:99:250,156,223,134,0,158,282,206,166,341:0,0,8,8 +chrX 1433503 . A . . END=1433934 GT:DP:GQ:MIN_DP:PL 0/0:57:75:57:0,75,1092 +chrX 1433935 . G A, 833.64 . AS_QUALapprox=|841|0;AS_VarDP=37|31|0;BaseQRankSum=1.074;DP=69;MQRankSum=0.000;QUALapprox=841;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=0.277;VarDP=68 GT:AD:DP:GQ:PL:SB 0/1:37,31,0:68:99:841,0,1010,952,1104,2056:18,19,15,16 +chrX 1433936 . G . . END=1434488 GT:DP:GQ:MIN_DP:PL 0/0:57:48:57:0,48,1325 +chrX 1434489 . C CAA,CAAAAAA, 562.60 . AS_QUALapprox=|570|163|0;AS_VarDP=15|11|0|0;BaseQRankSum=-1.203;DP=45;MQRankSum=0.000;QUALapprox=570;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=0.278;VarDP=26 GT:AD:DP:GQ:PL:SB 0/1:15,11,0,0:26:99:570,0,582,407,616,1014,521,630,1035,1129:9,6,3,8 +chrX 1434490 . A . . END=1434503 GT:DP:GQ:MIN_DP:PL 0/0:41:75:41:0,75,1125 +chrX 1434504 . G A, 537.64 . AS_QUALapprox=|545|0;AS_VarDP=20|18|0;BaseQRankSum=0.532;DP=47;MQRankSum=0.000;QUALapprox=545;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=0.585;VarDP=38 GT:AD:DP:GQ:PL:SB 0/1:20,18,0:38:99:545,0,728,606,783,1388:13,7,8,10 +chrX 1434505 . A . . END=1434781 GT:DP:GQ:MIN_DP:PL 0/0:52:76:52:0,76,888 +chrX 1434782 . G A, 387.64 . AS_QUALapprox=|395|0;AS_VarDP=16|15|0;BaseQRankSum=2.240;DP=32;MQRankSum=-0.968;QUALapprox=395;RAW_GT_COUNT=0,1,0;RAW_MQandDP=112129,32;ReadPosRankSum=0.692;VarDP=31 GT:AD:DP:GQ:PL:SB 0/1:16,15,0:31:99:395,0,382,442,427,869:9,7,7,8 +chrX 1434783 . A . . END=1434793 GT:DP:GQ:MIN_DP:PL 0/0:30:65:30:0,65,833 +chrX 1434794 . CAA C,AAA, 352.60 . AS_QUALapprox=|360|0|0;AS_VarDP=13|13|3|0;BaseQRankSum=-1.873;DP=45;MQRankSum=-0.832;QUALapprox=360;RAW_GT_COUNT=0,1,0;RAW_MQandDP=156929,45;ReadPosRankSum=1.338;VarDP=29 GT:AD:DP:GQ:PL:SB 0/1:13,13,3,0:29:99:360,0,596,399,363,1053,462,547,964,1086:9,4,7,9 +chrX 1434797 . A . . END=1434978 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 1434979 . G C, 696.64 . AS_QUALapprox=|704|0;AS_VarDP=41|27|0;BaseQRankSum=2.321;DP=74;MQRankSum=0.000;QUALapprox=704;RAW_GT_COUNT=0,1,0;RAW_MQandDP=266400,74;ReadPosRankSum=0.495;VarDP=68 GT:AD:DP:GQ:PL:SB 0/1:41,27,0:68:99:704,0,1070,827,1151,1978:21,20,12,15 +chrX 1434980 . T . . END=1435248 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1435249 . C T, 1194.64 . AS_QUALapprox=|1202|0;AS_VarDP=37|44|0;BaseQRankSum=0.716;DP=82;MQRankSum=0.000;QUALapprox=1202;RAW_GT_COUNT=0,1,0;RAW_MQandDP=295200,82;ReadPosRankSum=-0.147;VarDP=81 GT:AD:DP:GQ:PL:SB 0/1:37,44,0:81:99:1202,0,933,1312,1065,2377:18,19,23,21 +chrX 1435250 . G . . END=1435258 GT:DP:GQ:MIN_DP:PL 0/0:77:99:77:0,120,1800 +chrX 1435259 . GA G, 1277.60 . AS_QUALapprox=|1285|0;AS_VarDP=35|39|0;BaseQRankSum=0.318;DP=79;MQRankSum=0.000;QUALapprox=1285;RAW_GT_COUNT=0,1,0;RAW_MQandDP=284400,79;ReadPosRankSum=0.260;VarDP=74 GT:AD:DP:GQ:PL:SB 0/1:35,39,0:74:99:1285,0,1164,1391,1282,2672:19,16,21,18 +chrX 1435261 . G . . END=1435755 GT:DP:GQ:MIN_DP:PL 0/0:58:79:58:0,79,1380 +chrX 1435756 . T C, 746.64 . AS_QUALapprox=|754|0;AS_VarDP=25|20|0;BaseQRankSum=1.914;DP=46;MQRankSum=0.000;QUALapprox=754;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=1.203;VarDP=45 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,20,0:45:99:0|1:1435756_T_C:754,0,957,830,1017,1847:1435756:11,14,10,10 +chrX 1435757 . G . . END=1435761 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,120,1800 +chrX 1435762 . T C, 761.64 . AS_QUALapprox=|769|0;AS_VarDP=24|21|0;BaseQRankSum=-0.575;DP=45;MQRankSum=0.000;QUALapprox=769;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=0.728;VarDP=45 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,21,0:45:99:0|1:1435756_T_C:769,0,923,841,986,1827:1435756:11,13,9,12 +chrX 1435763 . G . . END=1436103 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,104,1449 +chrX 1436104 . C A, 873.64 . AS_QUALapprox=|881|0;AS_VarDP=22|32|0;BaseQRankSum=2.277;DP=55;MQRankSum=0.000;QUALapprox=881;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=0.520;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:22,32,0:54:99:881,0,462,946,559,1505:9,13,24,8 +chrX 1436105 . G . . END=1436191 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 1436192 . G C, 1144.64 . AS_QUALapprox=|1152|0;AS_VarDP=24|42|0;BaseQRankSum=-0.277;DP=67;MQRankSum=2.345;QUALapprox=1152;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237277,67;ReadPosRankSum=-1.667;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:24,42,0:66:99:1152,0,556,1223,683,1906:11,13,23,19 +chrX 1436193 . A . . END=1436259 GT:DP:GQ:MIN_DP:PL 0/0:75:99:75:0,120,1800 +chrX 1436260 . G A, 1557.64 . AS_QUALapprox=|1565|0;AS_VarDP=38|40|0;BaseQRankSum=1.011;DP=79;MQRankSum=-0.968;QUALapprox=1565;RAW_GT_COUNT=0,1,0;RAW_MQandDP=279902,79;ReadPosRankSum=1.332;VarDP=78 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:38,40,0:78:99:0|1:1436260_G_A:1565,0,1475,1680,1596,3275:1436260:17,21,15,25 +chrX 1436261 . C . . END=1436263 GT:DP:GQ:MIN_DP:PL 0/0:77:99:77:0,120,1800 +chrX 1436264 . C G, 1589.64 . AS_QUALapprox=|1597|0;AS_VarDP=38|41|0;BaseQRankSum=0.149;DP=80;MQRankSum=-0.943;QUALapprox=1597;RAW_GT_COUNT=0,1,0;RAW_MQandDP=283151,80;ReadPosRankSum=0.995;VarDP=79 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:38,41,0:79:99:0|1:1436260_G_A:1597,0,1472,1711,1596,3307:1436260:17,21,16,25 +chrX 1436265 . C . . END=1436265 GT:DP:GQ:MIN_DP:PL 0/0:76:99:76:0,120,1800 +chrX 1436266 . G A, 1589.64 . AS_QUALapprox=|1597|0;AS_VarDP=38|41|0;BaseQRankSum=1.628;DP=81;MQRankSum=-0.943;QUALapprox=1597;RAW_GT_COUNT=0,1,0;RAW_MQandDP=286751,81;ReadPosRankSum=0.163;VarDP=79 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:38,41,0:79:99:0|1:1436260_G_A:1597,0,1472,1711,1596,3307:1436260:17,21,16,25 +chrX 1436267 . G . . END=1436302 GT:DP:GQ:MIN_DP:PL 0/0:79:99:79:0,120,1800 +chrX 1436303 . T A, 1033.64 . AS_QUALapprox=|1041|0;AS_VarDP=38|38|0;BaseQRankSum=0.375;DP=80;MQRankSum=-0.570;QUALapprox=1041;RAW_GT_COUNT=0,1,0;RAW_MQandDP=281151,80;ReadPosRankSum=-1.117;VarDP=76 GT:AD:DP:GQ:PL:SB 0/1:38,38,0:76:99:1041,0,1016,1154,1130,2285:18,20,14,24 +chrX 1436304 . G . . END=1436496 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,100,1728 +chrX 1436497 . C T, 711.64 . AS_QUALapprox=|719|0;AS_VarDP=24|26|0;BaseQRankSum=2.424;DP=59;MQRankSum=-0.776;QUALapprox=719;RAW_GT_COUNT=0,1,0;RAW_MQandDP=152144,59;ReadPosRankSum=-0.981;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:24,26,0:50:99:719,0,590,791,667,1458:10,14,12,14 +chrX 1436498 . G . . END=1436926 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,106,1444 +chrX 1436927 . T C, 926.64 . AS_QUALapprox=|934|0;AS_VarDP=27|34|0;BaseQRankSum=1.694;DP=64;MQRankSum=1.155;QUALapprox=934;RAW_GT_COUNT=0,1,0;RAW_MQandDP=228825,64;ReadPosRankSum=-2.157;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:27,34,0:61:99:934,0,636,1015,738,1752:12,15,22,12 +chrX 1436928 . C . . END=1437002 GT:DP:GQ:MIN_DP:PL 0/0:67:65:67:0,65,1738 +chrX 1437003 . G . . END=1437003 GT:DP:GQ:MIN_DP:PL 0/0:60:0:60:0,0,1479 +chrX 1437004 . A . . END=1437006 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 1437007 . T . . END=1437007 GT:DP:GQ:MIN_DP:PL 0/0:56:0:56:0,0,1419 +chrX 1437008 . G . . END=1437010 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1437011 . A . . END=1437011 GT:DP:GQ:MIN_DP:PL 0/0:60:0:60:0,0,1470 +chrX 1437012 . T . . END=1437034 GT:DP:GQ:MIN_DP:PL 0/0:59:40:59:0,40,1467 +chrX 1437035 . C G, 750.64 . AS_QUALapprox=|758|0;AS_VarDP=17|28|0;BaseQRankSum=0.193;DP=46;MQRankSum=0.000;QUALapprox=758;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=0.820;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:17,28,0:45:99:758,0,391,809,475,1284:7,10,14,14 +chrX 1437036 . T . . END=1437047 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,100,1417 +chrX 1437048 . A . . END=1437048 GT:DP:GQ:MIN_DP:PL 0/0:55:0:55:0,0,1272 +chrX 1437049 . T . . END=1437178 GT:DP:GQ:MIN_DP:PL 0/0:51:53:51:0,53,1474 +chrX 1437179 . T . . END=1437179 GT:DP:GQ:MIN_DP:PL 0/0:64:19:64:0,19,1588 +chrX 1437180 . G . . END=1437226 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 1437227 . A G, 1015.64 . AS_QUALapprox=|1023|0;AS_VarDP=31|29|0;BaseQRankSum=0.174;DP=64;MQRankSum=-4.486;QUALapprox=1023;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194230,64;ReadPosRankSum=2.293;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:31,29,0:60:99:0|1:1437227_A_G:1023,0,772,1116,858,1974:1437227:9,22,9,20 +chrX 1437228 . G . . END=1437241 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 1437242 . G A, 623.64 . AS_QUALapprox=|631|0;AS_VarDP=32|27|0;BaseQRankSum=-0.203;DP=64;MQRankSum=-3.319;QUALapprox=631;RAW_GT_COUNT=0,1,0;RAW_MQandDP=185227,64;ReadPosRankSum=0.663;VarDP=59 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:32,27,0:59:99:0|1:1437227_A_G:631,0,1202,728,1282,2009:1437227:9,23,8,19 +chrX 1437243 . T . . END=1438058 GT:DP:GQ:MIN_DP:PL 0/0:54:46:54:0,46,1265 +chrX 1438059 . T C, 667.64 . AS_QUALapprox=|675|0;AS_VarDP=22|26|0;BaseQRankSum=-0.302;DP=50;MQRankSum=0.000;QUALapprox=675;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=-1.377;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:22,26,0:48:99:675,0,556,740,634,1374:13,9,6,20 +chrX 1438060 . G . . END=1438206 GT:DP:GQ:MIN_DP:PL 0/0:39:42:39:0,42,977 +chrX 1438207 . C A, 455.64 . AS_QUALapprox=|463|0;AS_VarDP=16|17|0;BaseQRankSum=2.069;DP=36;MQRankSum=-0.910;QUALapprox=463;RAW_GT_COUNT=0,1,0;RAW_MQandDP=128916,36;ReadPosRankSum=0.000;VarDP=33 GT:AD:DP:GQ:PL:SB 0/1:16,17,0:33:99:463,0,347,510,398,908:5,11,8,9 +chrX 1438208 . G . . END=1438281 GT:DP:GQ:MIN_DP:PL 0/0:38:87:38:0,87,897 +chrX 1438282 . CA C, 380.60 . AS_QUALapprox=|388|0;AS_VarDP=23|19|0;BaseQRankSum=-0.724;DP=48;MQRankSum=0.000;QUALapprox=388;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=-1.675;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:23,19,0:42:99:388,0,495,457,551,1008:13,10,11,8 +chrX 1438284 . A . . END=1438380 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,115,1618 +chrX 1438381 . C G, 722.64 . AS_QUALapprox=|730|0;AS_VarDP=33|20|0;BaseQRankSum=1.204;DP=55;MQRankSum=0.000;QUALapprox=730;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=0.630;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:33,20,0:53:99:0|1:1438381_C_G:730,0,1284,830,1344,2174:1438381:24,9,8,12 +chrX 1438382 . A . . END=1438386 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 1438387 . A T, 690.64 . AS_QUALapprox=|698|0;AS_VarDP=33|19|0;BaseQRankSum=-1.115;DP=53;MQRankSum=0.000;QUALapprox=698;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=0.290;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:33,19,0:52:99:0|1:1438381_C_G:698,0,1318,798,1375,2173:1438381:23,10,7,12 +chrX 1438388 . G . . END=1438410 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 1438411 . T C, 724.64 . AS_QUALapprox=|732|0;AS_VarDP=32|20|0;BaseQRankSum=0.452;DP=53;MQRankSum=0.000;QUALapprox=732;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=-0.800;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:32,20,0:52:99:0|1:1438381_C_G:732,0,1283,828,1343,2171:1438381:20,12,8,12 +chrX 1438412 . A . . END=1438413 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 1438414 . G C, 724.64 . AS_QUALapprox=|732|0;AS_VarDP=32|20|0;BaseQRankSum=0.040;DP=54;MQRankSum=0.000;QUALapprox=732;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=-0.828;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:32,20,0:52:99:0|1:1438381_C_G:732,0,1283,828,1343,2171:1438381:20,12,8,12 +chrX 1438415 . A . . END=1439178 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,107,1433 +chrX 1439179 . G A, 812.64 . AS_QUALapprox=|820|0;AS_VarDP=26|30|0;BaseQRankSum=0.176;DP=60;MQRankSum=0.000;QUALapprox=820;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=1.742;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:26,30,0:56:99:820,0,696,898,785,1683:18,8,16,14 +chrX 1439180 . T . . END=1439312 GT:DP:GQ:MIN_DP:PL 0/0:73:99:73:0,120,1800 +chrX 1439313 . G C, 1358.64 . AS_QUALapprox=|1366|0;AS_VarDP=36|49|0;BaseQRankSum=2.171;DP=89;MQRankSum=0.000;QUALapprox=1366;RAW_GT_COUNT=0,1,0;RAW_MQandDP=320400,89;ReadPosRankSum=1.677;VarDP=85 GT:AD:DP:GQ:PL:SB 0/1:36,49,0:85:99:1366,0,834,1473,981,2454:20,16,24,25 +chrX 1439314 . C . . END=1439835 GT:DP:GQ:MIN_DP:PL 0/0:59:73:59:0,73,1100 +chrX 1439836 . C . . END=1439836 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,1046 +chrX 1439837 . A . . END=1442104 GT:DP:GQ:MIN_DP:PL 0/0:64:70:64:0,70,1365 +chrX 1442105 . G A, 2363.06 . AS_QUALapprox=|2377|0;AS_VarDP=0|73|0;DP=76;QUALapprox=2377;RAW_GT_COUNT=0,0,1;RAW_MQandDP=273600,76;VarDP=73 GT:AD:DP:GQ:PL:SB 1/1:0,73,0:73:99:2377,219,0,2377,219,2377:0,0,42,31 +chrX 1442106 . T . . END=1442797 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,119,1798 +chrX 1442798 . T C, 1692.06 . AS_QUALapprox=|1706|0;AS_VarDP=0|54|0;DP=56;QUALapprox=1706;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:1706,161,0,1706,161,1706:0,0,31,23 +chrX 1442799 . A . . END=1442905 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 1442906 . A T, 2297.06 . AS_QUALapprox=|2311|0;AS_VarDP=0|74|0;DP=76;QUALapprox=2311;RAW_GT_COUNT=0,0,1;RAW_MQandDP=273600,76;VarDP=74 GT:AD:DP:GQ:PL:SB 1/1:0,74,0:74:99:2311,221,0,2311,221,2311:0,0,48,26 +chrX 1442907 . G . . END=1443048 GT:DP:GQ:MIN_DP:PL 0/0:83:99:83:0,120,1800 +chrX 1443049 . A G, 3384.06 . AS_QUALapprox=|3398|0;AS_VarDP=0|80|0;DP=80;QUALapprox=3398;RAW_GT_COUNT=0,0,1;RAW_MQandDP=281276,80;VarDP=80 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,80,0:80:99:0|1:1443049_A_G:3398,240,0,3398,240,3398:1443049:0,0,37,43 +chrX 1443050 . C . . END=1443057 GT:DP:GQ:MIN_DP:PL 0/0:77:99:77:0,120,1800 +chrX 1443058 . G GAC, 3365.03 . AS_QUALapprox=|3379|0;AS_VarDP=0|79|0;DP=79;QUALapprox=3379;RAW_GT_COUNT=0,0,1;RAW_MQandDP=275246,79;VarDP=79 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,79,0:79:99:0|1:1443049_A_G:3379,237,0,3379,237,3379:1443049:0,0,38,41 +chrX 1443059 . A . . END=1443139 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,110,1563 +chrX 1443140 . C T,CACCGCCGTCGTGGACACAT, 2002.06 . AS_QUALapprox=|1000|1662|0;AS_VarDP=3|12|27|0;BaseQRankSum=1.017;DP=62;MQRankSum=0.748;QUALapprox=2019;RAW_GT_COUNT=0,0,1;RAW_MQandDP=209468,62;ReadPosRankSum=-1.392;VarDP=42 GT:AD:DP:GQ:PL:SB 1/2:3,12,27,0:42:99:2019,1019,1083,357,0,404,1757,1140,495,1859:2,1,18,21 +chrX 1443141 . G . . END=1443162 GT:DP:GQ:MIN_DP:PL 0/0:44:98:44:0,98,1214 +chrX 1443163 . G A, 1752.06 . AS_QUALapprox=|1766|0;AS_VarDP=1|46|0;BaseQRankSum=1.959;DP=49;MQRankSum=-0.429;QUALapprox=1766;RAW_GT_COUNT=0,0,1;RAW_MQandDP=164351,49;ReadPosRankSum=-0.527;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:1,46,0:47:99:1766,116,0,1769,138,1791:0,1,27,19 +chrX 1443164 . C . . END=1443252 GT:DP:GQ:MIN_DP:PL 0/0:56:34:51:0,34,1245 +chrX 1443253 . ACGCCGCCGTCTTGGACACACACCGCCATCATGGACACACACCGCCATCTTGGACACACACCGCCATCTTGGACACACACCGCCATCTTGGACAGACACCGCCATCTTGGACACACACCACCATCATGGACACACGC A, 2023.03 . AS_QUALapprox=|2037|0;AS_VarDP=0|52|0;DP=52;QUALapprox=2037;RAW_GT_COUNT=0,0,1;RAW_MQandDP=174546,52;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,52,0:52:99:0|1:1443253_ACGCCGCCGTCTTGGACACACACCGCCATCATGGACACACACCGCCATCTTGGACACACACCGCCATCTTGGACACACACCGCCATCTTGGACAGACACCGCCATCTTGGACACACACCACCATCATGGACACACGC_A:2037,144,0,2037,144,2037:1443253:0,0,24,28 +chrX 1443390 . C . . END=1443405 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,0 +chrX 1443406 . C . . END=1443415 GT:DP:GQ:MIN_DP:PL 0/0:48:21:48:0,21,315 +chrX 1443416 . T A, 1905.06 . AS_QUALapprox=|1919|0;AS_VarDP=1|48|0;BaseQRankSum=-0.353;DP=50;MQRankSum=-0.385;QUALapprox=1919;RAW_GT_COUNT=0,0,1;RAW_MQandDP=166288,50;ReadPosRankSum=-1.228;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:1,48,0:49:99:0|1:1443253_ACGCCGCCGTCTTGGACACACACCGCCATCATGGACACACACCGCCATCTTGGACACACACCGCCATCTTGGACACACACCGCCATCTTGGACAGACACCGCCATCTTGGACACACACCACCATCATGGACACACGC_A:1919,126,0,1922,141,1937:1443253:0,1,23,25 +chrX 1443417 . T . . END=1443586 GT:DP:GQ:MIN_DP:PL 0/0:44:71:44:0,71,1103 +chrX 1443587 . C T, 1642.06 . AS_QUALapprox=|1656|0;AS_VarDP=0|41|0;DP=41;QUALapprox=1656;RAW_GT_COUNT=0,0,1;RAW_MQandDP=144372,41;VarDP=41 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,41,0:41:99:0|1:1443587_C_T:1656,123,0,1656,123,1656:1443587:0,0,20,21 +chrX 1443588 . G . . END=1443624 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,108,1275 +chrX 1443625 . C T, 1962.06 . AS_QUALapprox=|1976|0;AS_VarDP=0|46|0;DP=46;QUALapprox=1976;RAW_GT_COUNT=0,0,1;RAW_MQandDP=159586,46;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,46,0:46:99:0|1:1443587_C_T:1976,138,0,1976,138,1976:1443587:0,0,26,20 +chrX 1443626 . G . . END=1443631 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,104,1325 +chrX 1443632 . GTGGACAGACACCGCCATCA G, 1854.03 . AS_QUALapprox=|1868|0;AS_VarDP=0|43|0;DP=47;QUALapprox=1868;RAW_GT_COUNT=0,0,1;RAW_MQandDP=163305,47;VarDP=43 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,43,0:43:99:0|1:1443587_C_T:1868,130,0,1868,130,1868:1443587:0,0,25,18 +chrX 1443652 . T . . END=1443669 GT:DP:GQ:MIN_DP:PL 0/0:48:90:48:0,90,1448 +chrX 1443670 . A . . END=1443670 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,998 +chrX 1443671 . T . . END=1444108 GT:DP:GQ:MIN_DP:PL 0/0:57:65:57:0,65,1390 +chrX 1444109 . A G, 1960.06 . AS_QUALapprox=|1974|0;AS_VarDP=0|64|0;DP=66;QUALapprox=1974;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=64 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:1974,191,0,1974,191,1974:0,0,27,37 +chrX 1444110 . G . . END=1444191 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1444192 . C T, 1683.06 . AS_QUALapprox=|1697|0;AS_VarDP=0|50|0;DP=52;QUALapprox=1697;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1697,150,0,1697,150,1697:0,0,23,27 +chrX 1444193 . T . . END=1444207 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,111,1485 +chrX 1444208 . AT A, 465.71 . AS_QUALapprox=|473|0;AS_VarDP=6|27|0;BaseQRankSum=-1.343;DP=49;MQRankSum=0.000;QUALapprox=473;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=-1.261;VarDP=33 GT:AD:DP:GQ:PL:SB 0/1:6,27,0:33:6:473,0,6,490,84,574:6,0,8,19 +chrX 1444210 . T . . END=1444506 GT:DP:GQ:MIN_DP:PL 0/0:47:29:47:0,29,877 +chrX 1444507 . G C, 1766.06 . AS_QUALapprox=|1780|0;AS_VarDP=0|59|0;DP=60;QUALapprox=1780;RAW_GT_COUNT=0,0,1;RAW_MQandDP=215425,60;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1780,176,0,1780,176,1780:0,0,33,26 +chrX 1444508 . C . . END=1444764 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,113,1638 +chrX 1444765 . T C, 1652.06 . AS_QUALapprox=|1666|0;AS_VarDP=0|52|0;DP=55;QUALapprox=1666;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1666,155,0,1666,155,1666:0,0,25,27 +chrX 1444766 . A . . END=1445632 GT:DP:GQ:MIN_DP:PL 0/0:55:95:55:0,95,1340 +chrX 1445633 . T C, 1592.06 . AS_QUALapprox=|1606|0;AS_VarDP=0|52|0;DP=53;QUALapprox=1606;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1606,154,0,1606,154,1606:0,0,25,27 +chrX 1445634 . G . . END=1446138 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 1446139 . G C, 3065.06 . AS_QUALapprox=|3079|0;AS_VarDP=0|73|0;DP=74;QUALapprox=3079;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;VarDP=73 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,73,0:73:99:0|1:1446139_G_C:3079,219,0,3079,219,3079:1446139:0,0,38,35 +chrX 1446140 . T . . END=1446161 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 1446162 . G A, 3112.06 . AS_QUALapprox=|3126|0;AS_VarDP=0|74|0;DP=75;QUALapprox=3126;RAW_GT_COUNT=0,0,1;RAW_MQandDP=270000,75;VarDP=74 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,74,0:74:99:0|1:1446139_G_C:3126,223,0,3126,223,3126:1446139:0,0,35,39 +chrX 1446163 . T . . END=1446499 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,108,1494 +chrX 1446500 . A AT, 447.60 . AS_QUALapprox=|455|0;AS_VarDP=16|25|0;BaseQRankSum=2.094;DP=47;MQRankSum=-1.110;QUALapprox=455;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165200,47;ReadPosRankSum=0.922;VarDP=41 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:16,25,0:41:99:0|1:1446500_A_AT:455,0,249,503,322,824:1446500:6,10,17,8 +chrX 1446501 . T . . END=1446518 GT:DP:GQ:MIN_DP:PL 0/0:54:42:51:0,42,1372 +chrX 1446519 . A . . END=1446519 GT:DP:GQ:MIN_DP:PL 0/0:52:1:52:0,1,1236 +chrX 1446520 . G . . END=1447511 GT:DP:GQ:MIN_DP:PL 0/0:65:75:65:0,75,1380 +chrX 1447512 . G . . END=1447512 GT:DP:GQ:MIN_DP:PL 0/0:52:7:52:0,7,1269 +chrX 1447513 . G . . END=1447817 GT:DP:GQ:MIN_DP:PL 0/0:60:30:58:0,30,1349 +chrX 1447818 . T . . END=1447818 GT:DP:GQ:MIN_DP:PL 0/0:65:0:65:0,0,1475 +chrX 1447819 . A . . END=1448142 GT:DP:GQ:MIN_DP:PL 0/0:53:32:50:0,32,1191 +chrX 1448143 . C . . END=1448143 GT:DP:GQ:MIN_DP:PL 0/0:54:8:54:0,8,1307 +chrX 1448144 . G . . END=1448234 GT:DP:GQ:MIN_DP:PL 0/0:55:47:55:0,47,1305 +chrX 1448235 . T . . END=1448235 GT:DP:GQ:MIN_DP:PL 0/0:50:0:50:0,0,1191 +chrX 1448236 . G . . END=1448271 GT:DP:GQ:MIN_DP:PL 0/0:49:93:49:0,93,1147 +chrX 1448272 . A . . END=1448272 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,659 +chrX 1448273 . C . . END=1448355 GT:DP:GQ:MIN_DP:PL 0/0:42:36:40:0,36,1081 +chrX 1448356 . C . . END=1448356 GT:DP:GQ:MIN_DP:PL 0/0:58:1:58:0,1,1449 +chrX 1448357 . C . . END=1448358 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 1448359 . T . . END=1448359 GT:DP:GQ:MIN_DP:PL 0/0:57:0:57:0,0,1294 +chrX 1448360 . A . . END=1448522 GT:DP:GQ:MIN_DP:PL 0/0:59:59:59:0,59,1393 +chrX 1448523 . T . . END=1448523 GT:DP:GQ:MIN_DP:PL 0/0:47:3:47:0,3,1116 +chrX 1448524 . G . . END=1448544 GT:DP:GQ:MIN_DP:PL 0/0:53:22:50:0,22,1261 +chrX 1448545 . T . . END=1448545 GT:DP:GQ:MIN_DP:PL 0/0:54:14:54:0,14,1451 +chrX 1448546 . G . . END=1448746 GT:DP:GQ:MIN_DP:PL 0/0:60:20:58:0,20,1466 +chrX 1448747 . C G, 468.64 . AS_QUALapprox=|476|0;AS_VarDP=31|20|0;BaseQRankSum=-0.540;DP=53;MQRankSum=-1.750;QUALapprox=476;RAW_GT_COUNT=0,1,0;RAW_MQandDP=185666,53;ReadPosRankSum=-1.390;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:31,20,0:51:99:476,0,865,569,924,1493:10,21,11,9 +chrX 1448748 . C . . END=1449218 GT:DP:GQ:MIN_DP:PL 0/0:74:99:74:0,115,1800 +chrX 1449219 . G A, 1048.64 . AS_QUALapprox=|1056|0;AS_VarDP=28|39|0;BaseQRankSum=2.029;DP=69;MQRankSum=0.000;QUALapprox=1056;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=0.750;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:28,39,0:67:99:1056,0,658,1139,774,1913:17,11,17,22 +chrX 1449220 . T . . END=1449652 GT:DP:GQ:MIN_DP:PL 0/0:49:80:49:0,80,1253 +chrX 1449653 . C . . END=1449653 GT:DP:GQ:MIN_DP:PL 0/0:43:10:43:0,10,1116 +chrX 1449654 . C . . END=1449698 GT:DP:GQ:MIN_DP:PL 0/0:44:21:40:0,21,1001 +chrX 1449699 . C A, 378.64 . AS_QUALapprox=|386|0;AS_VarDP=15|18|0;BaseQRankSum=0.573;DP=36;MQRankSum=1.617;QUALapprox=386;RAW_GT_COUNT=0,1,0;RAW_MQandDP=124378,36;ReadPosRankSum=-1.428;VarDP=33 GT:AD:DP:GQ:PL:SB 0/1:15,18,0:33:99:386,0,294,430,347,777:6,9,6,12 +chrX 1449700 . C . . END=1449908 GT:DP:GQ:MIN_DP:PL 0/0:40:51:40:0,51,724 +chrX 1449909 . AT A, 0.01 . AS_QUALapprox=|1|0;AS_VarDP=31|8|0;BaseQRankSum=-0.145;DP=43;MQRankSum=0.000;QUALapprox=1;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154800,43;ReadPosRankSum=-2.364;VarDP=39 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:31,8,0:39:1:0|1:1449909_AT_A:1,0,1246,95,1260,1354:1449909:14,17,2,6 +chrX 1449911 . C . . END=1449913 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,99,1485 +chrX 1449914 . A C, 0.02 . AS_QUALapprox=|1|0;AS_VarDP=31|8|0;BaseQRankSum=1.393;DP=41;MQRankSum=0.000;QUALapprox=1;RAW_GT_COUNT=0,1,0;RAW_MQandDP=145600,41;ReadPosRankSum=-2.280;VarDP=39 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:31,8,0:39:1:0|1:1449909_AT_A:1,0,1246,95,1260,1354:1449909:14,17,2,6 +chrX 1449915 . C . . END=1450459 GT:DP:GQ:MIN_DP:PL 0/0:38:34:36:0,34,838 +chrX 1450460 . T . . END=1450460 GT:DP:GQ:MIN_DP:PL 0/0:37:12:37:0,12,897 +chrX 1450461 . C . . END=1450539 GT:DP:GQ:MIN_DP:PL 0/0:34:38:34:0,38,842 +chrX 1450540 . A C, 119.64 . AS_QUALapprox=|127|0;AS_VarDP=23|9|0;BaseQRankSum=-2.698;DP=32;MQRankSum=0.000;QUALapprox=127;RAW_GT_COUNT=0,1,0;RAW_MQandDP=115200,32;ReadPosRankSum=1.300;VarDP=32 GT:AD:DP:GQ:PL:SB 0/1:23,9,0:32:99:127,0,649,196,675,871:14,9,7,2 +chrX 1450541 . C . . END=1450566 GT:DP:GQ:MIN_DP:PL 0/0:25:40:25:0,40,655 +chrX 1450567 . T . . END=1450567 GT:DP:GQ:MIN_DP:PL 0/0:23:15:23:0,15,592 +chrX 1450568 . C . . END=1450584 GT:DP:GQ:MIN_DP:PL 0/0:26:45:26:0,45,545 +chrX 1450585 . T . . END=1450585 GT:DP:GQ:MIN_DP:PL 0/0:21:0:21:0,0,430 +chrX 1450586 . C . . END=1450619 GT:DP:GQ:MIN_DP:PL 0/0:24:28:21:0,28,600 +chrX 1450620 . T . . END=1450620 GT:DP:GQ:MIN_DP:PL 0/0:25:15:25:0,15,557 +chrX 1450621 . C . . END=1450642 GT:DP:GQ:MIN_DP:PL 0/0:25:37:24:0,37,664 +chrX 1450643 . A . . END=1450643 GT:DP:GQ:MIN_DP:PL 0/0:26:18:26:0,18,674 +chrX 1450644 . T . . END=1450653 GT:DP:GQ:MIN_DP:PL 0/0:26:47:26:0,47,700 +chrX 1450654 . T . . END=1450654 GT:DP:GQ:MIN_DP:PL 0/0:26:8:26:0,8,653 +chrX 1450655 . T . . END=1450758 GT:DP:GQ:MIN_DP:PL 0/0:26:28:23:0,28,639 +chrX 1450759 . T . . END=1450759 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,798 +chrX 1450760 . T . . END=1450761 GT:DP:GQ:MIN_DP:PL 0/0:50:98:50:0,98,1424 +chrX 1450762 . C . . END=1450784 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,131 +chrX 1450785 . A . . END=1450785 GT:DP:GQ:MIN_DP:PL 0/0:50:49:50:0,49,777 +chrX 1450786 . C . . END=1450798 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,226 +chrX 1450799 . A G, 1144.10 . AS_QUALapprox=|1216|0;AS_VarDP=0|31|0;DP=51;QUALapprox=1216;RAW_GT_COUNT=0,0,1;RAW_MQandDP=175085,51;VarDP=31 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,31,0:31:93:0|1:1450799_A_G:1216,93,0,1244,96,1351:1450799:0,0,15,16 +chrX 1450800 . G . . END=1450827 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,138 +chrX 1450828 . C G, 1075.05 . AS_QUALapprox=|1147|0;AS_VarDP=0|28|0;DP=48;QUALapprox=1147;RAW_GT_COUNT=0,0,1;RAW_MQandDP=166453,48;VarDP=28 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,28,0:28:84:0|1:1450799_A_G:1147,84,0,1168,87,1226:1450799:0,0,15,13 +chrX 1450829 . G . . END=1450839 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,101 +chrX 1450840 . A . . END=1450879 GT:DP:GQ:MIN_DP:PL 0/0:45:56:45:0,56,1087 +chrX 1450880 . G . . END=1450880 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,864 +chrX 1450881 . C . . END=1450929 GT:DP:GQ:MIN_DP:PL 0/0:32:41:32:0,41,625 +chrX 1450930 . A . . END=1450930 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,772 +chrX 1450931 . G . . END=1450941 GT:DP:GQ:MIN_DP:PL 0/0:33:50:33:0,50,928 +chrX 1450942 . C . . END=1450942 GT:DP:GQ:MIN_DP:PL 0/0:31:8:31:0,8,717 +chrX 1450943 . T . . END=1450978 GT:DP:GQ:MIN_DP:PL 0/0:38:37:37:0,37,911 +chrX 1450979 . T . . END=1450979 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,800 +chrX 1450980 . A . . END=1450980 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,117,1755 +chrX 1450981 . T . . END=1450981 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,714 +chrX 1450982 . T . . END=1450987 GT:DP:GQ:MIN_DP:PL 0/0:44:28:40:0,28,1210 +chrX 1450988 . C . . END=1450988 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,1126 +chrX 1450989 . T . . END=1451019 GT:DP:GQ:MIN_DP:PL 0/0:44:28:41:0,28,1201 +chrX 1451020 . G . . END=1451020 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,1155 +chrX 1451021 . C . . END=1451021 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 1451022 . T . . END=1451023 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1110 +chrX 1451024 . T . . END=1451025 GT:DP:GQ:MIN_DP:PL 0/0:52:93:52:0,93,1503 +chrX 1451026 . T . . END=1451026 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,1113 +chrX 1451027 . C . . END=1451028 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 1451029 . A . . END=1451030 GT:DP:GQ:MIN_DP:PL 0/0:50:0:50:0,0,1105 +chrX 1451031 . T . . END=1451033 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 1451034 . T . . END=1451036 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1102 +chrX 1451037 . G . . END=1451041 GT:DP:GQ:MIN_DP:PL 0/0:59:61:59:0,61,1707 +chrX 1451042 . C . . END=1451042 GT:DP:GQ:MIN_DP:PL 0/0:59:0:59:0,0,1434 +chrX 1451043 . C . . END=1451066 GT:DP:GQ:MIN_DP:PL 0/0:39:45:31:0,45,578 +chrX 1451067 . A C, 144.64 . AS_QUALapprox=|152|0;AS_VarDP=10|6|0;BaseQRankSum=-1.382;DP=36;MQRankSum=-2.782;QUALapprox=152;RAW_GT_COUNT=0,1,0;RAW_MQandDP=114730,36;ReadPosRankSum=1.579;VarDP=16 GT:AD:DP:GQ:PL:SB 0/1:10,6,0:16:99:152,0,293,183,313,496:3,7,5,1 +chrX 1451068 . C . . END=1451074 GT:DP:GQ:MIN_DP:PL 0/0:30:66:30:0,66,990 +chrX 1451075 . A G, 37.64 . AS_QUALapprox=|45|0;AS_VarDP=9|3|0;BaseQRankSum=-1.973;DP=32;MQRankSum=-1.150;QUALapprox=45;RAW_GT_COUNT=0,1,0;RAW_MQandDP=102330,32;ReadPosRankSum=1.602;VarDP=12 GT:AD:DP:GQ:PL:SB 0/1:9,3,0:12:45:45,0,271,73,283,356:2,7,2,1 +chrX 1451076 . T . . END=1451099 GT:DP:GQ:MIN_DP:PL 0/0:27:29:23:0,29,364 +chrX 1451100 . A . . END=1451100 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,585 +chrX 1451101 . T . . END=1451106 GT:DP:GQ:MIN_DP:PL 0/0:28:25:27:0,25,297 +chrX 1451107 . G . . END=1451109 GT:DP:GQ:MIN_DP:PL 0/0:29:17:29:0,17,166 +chrX 1451110 . G . . END=1451110 GT:DP:GQ:MIN_DP:PL 0/0:24:72:24:0,72,724 +chrX 1451111 . G . . END=1451111 GT:DP:GQ:MIN_DP:PL 0/0:27:17:27:0,17,165 +chrX 1451112 . T . . END=1451113 GT:DP:GQ:MIN_DP:PL 0/0:25:69:25:0,69,1035 +chrX 1451114 . C . . END=1451115 GT:DP:GQ:MIN_DP:PL 0/0:25:14:25:0,14,120 +chrX 1451116 . G . . END=1451129 GT:DP:GQ:MIN_DP:PL 0/0:26:44:23:0,44,629 +chrX 1451130 . T . . END=1451130 GT:DP:GQ:MIN_DP:PL 0/0:30:15:30:0,15,122 +chrX 1451131 . C . . END=1451136 GT:DP:GQ:MIN_DP:PL 0/0:26:45:25:0,45,566 +chrX 1451137 . T . . END=1451137 GT:DP:GQ:MIN_DP:PL 0/0:28:12:28:0,12,103 +chrX 1451138 . C . . END=1451143 GT:DP:GQ:MIN_DP:PL 0/0:26:72:26:0,72,728 +chrX 1451144 . G . . END=1451144 GT:DP:GQ:MIN_DP:PL 0/0:28:10:28:0,10,59 +chrX 1451145 . G . . END=1451152 GT:DP:GQ:MIN_DP:PL 0/0:27:75:27:0,75,824 +chrX 1451153 . G . . END=1451154 GT:DP:GQ:MIN_DP:PL 0/0:31:10:30:0,10,60 +chrX 1451155 . C . . END=1451159 GT:DP:GQ:MIN_DP:PL 0/0:28:75:28:0,75,824 +chrX 1451160 . C . . END=1451161 GT:DP:GQ:MIN_DP:PL 0/0:30:10:30:0,10,60 +chrX 1451162 . C . . END=1451171 GT:DP:GQ:MIN_DP:PL 0/0:30:67:30:0,67,819 +chrX 1451172 . C . . END=1451172 GT:DP:GQ:MIN_DP:PL 0/0:29:7:29:0,7,15 +chrX 1451173 . C . . END=1451174 GT:DP:GQ:MIN_DP:PL 0/0:29:75:29:0,75,1125 +chrX 1451175 . TAGGGGGTCCTGGGACACTCCTCCCTCCCCATCCCTA T, 1.75 . AS_QUALapprox=|15|0;AS_VarDP=0|0|0;DP=29;QUALapprox=15;RAW_GT_COUNT=0,0,1;RAW_MQandDP=102130,29;VarDP=29 GT:AD:DP:GQ:PL:SB 1/1:0,0,0:0:7:15,7,0,15,7,15:0,0,0,0 +chrX 1451212 . A . . END=1451226 GT:DP:GQ:MIN_DP:PL 0/0:32:58:32:0,58,828 +chrX 1451227 . A . . END=1451227 GT:DP:GQ:MIN_DP:PL 0/0:34:9:34:0,9,825 +chrX 1451228 . C . . END=1451322 GT:DP:GQ:MIN_DP:PL 0/0:36:38:35:0,38,830 +chrX 1451323 . T . . END=1451323 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,828 +chrX 1451324 . G . . END=1451369 GT:DP:GQ:MIN_DP:PL 0/0:40:57:40:0,57,1021 +chrX 1451370 . A . . END=1451370 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,923 +chrX 1451371 . C . . END=1451415 GT:DP:GQ:MIN_DP:PL 0/0:43:23:42:0,23,934 +chrX 1451416 . A . . END=1451416 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,623 +chrX 1451417 . C . . END=1451483 GT:DP:GQ:MIN_DP:PL 0/0:41:21:37:0,21,913 +chrX 1451484 . T . . END=1451484 GT:DP:GQ:MIN_DP:PL 0/0:36:13:36:0,13,881 +chrX 1451485 . A . . END=1451502 GT:DP:GQ:MIN_DP:PL 0/0:42:62:42:0,62,941 +chrX 1451503 . A . . END=1451503 GT:DP:GQ:MIN_DP:PL 0/0:40:1:40:0,1,991 +chrX 1451504 . T . . END=1451512 GT:DP:GQ:MIN_DP:PL 0/0:43:27:42:0,27,1071 +chrX 1451513 . A . . END=1451513 GT:DP:GQ:MIN_DP:PL 0/0:45:17:45:0,17,1096 +chrX 1451514 . C . . END=1451548 GT:DP:GQ:MIN_DP:PL 0/0:48:36:46:0,36,1235 +chrX 1451549 . A . . END=1451549 GT:DP:GQ:MIN_DP:PL 0/0:52:0:52:0,0,1220 +chrX 1451550 . C . . END=1451619 GT:DP:GQ:MIN_DP:PL 0/0:47:44:47:0,44,1134 +chrX 1451620 . C T, 416.64 . AS_QUALapprox=|424|0;AS_VarDP=20|17|0;BaseQRankSum=-0.879;DP=38;MQRankSum=0.976;QUALapprox=424;RAW_GT_COUNT=0,1,0;RAW_MQandDP=136116,38;ReadPosRankSum=1.205;VarDP=37 GT:AD:DP:GQ:PL:SB 0/1:20,17,0:37:99:424,0,535,484,586,1069:12,8,11,6 +chrX 1451621 . T . . END=1451682 GT:DP:GQ:MIN_DP:PL 0/0:35:30:30:0,30,803 +chrX 1451683 . C T, 445.64 . AS_QUALapprox=|453|0;AS_VarDP=16|18|0;BaseQRankSum=0.303;DP=37;MQRankSum=0.000;QUALapprox=453;RAW_GT_COUNT=0,1,0;RAW_MQandDP=133200,37;ReadPosRankSum=0.587;VarDP=34 GT:AD:DP:GQ:PL:SB 0/1:16,18,0:34:99:453,0,382,501,436,937:10,6,9,9 +chrX 1451684 . G . . END=1451750 GT:DP:GQ:MIN_DP:PL 0/0:32:55:32:0,55,797 +chrX 1451751 . G A, 277.64 . AS_QUALapprox=|285|0;AS_VarDP=14|12|0;BaseQRankSum=1.633;DP=28;MQRankSum=0.602;QUALapprox=285;RAW_GT_COUNT=0,1,0;RAW_MQandDP=99331,28;ReadPosRankSum=1.158;VarDP=26 GT:AD:DP:GQ:PL:SB 0/1:14,12,0:26:99:285,0,315,326,351,677:9,5,3,9 +chrX 1451752 . T . . END=1451768 GT:DP:GQ:MIN_DP:PL 0/0:26:50:26:0,50,695 +chrX 1451769 . T . . END=1451769 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,1170 +chrX 1451770 . A . . END=1451776 GT:DP:GQ:MIN_DP:PL 0/0:30:63:30:0,63,754 +chrX 1451777 . A . . END=1451778 GT:DP:GQ:MIN_DP:PL 0/0:33:9:33:0,9,1305 +chrX 1451779 . C . . END=1451783 GT:DP:GQ:MIN_DP:PL 0/0:32:87:32:0,87,1305 +chrX 1451784 . A . . END=1451784 GT:DP:GQ:MIN_DP:PL 0/0:33:9:33:0,9,1291 +chrX 1451785 . G . . END=1451919 GT:DP:GQ:MIN_DP:PL 0/0:51:37:46:0,37,1105 +chrX 1451920 . A . . END=1451920 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,1097 +chrX 1451921 . G . . END=1451947 GT:DP:GQ:MIN_DP:PL 0/0:41:47:39:0,47,1078 +chrX 1451948 . A C, 50.64 . AS_QUALapprox=|58|0;AS_VarDP=36|6|0;BaseQRankSum=-2.654;DP=43;MQRankSum=0.476;QUALapprox=58;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151825,43;ReadPosRankSum=2.337;VarDP=42 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:36,6,0:42:58:1|0:1451935_A_C:58,0,1055,166,1072,1238:1451935:19,17,4,2 +chrX 1451949 . C . . END=1452132 GT:DP:GQ:MIN_DP:PL 0/0:50:25:45:0,25,1180 +chrX 1452133 . A . . END=1452133 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,956 +chrX 1452134 . C . . END=1452220 GT:DP:GQ:MIN_DP:PL 0/0:56:92:56:0,92,1444 +chrX 1452221 . C T, 612.64 . AS_QUALapprox=|620|0;AS_VarDP=23|25|0;BaseQRankSum=-0.663;DP=49;MQRankSum=1.084;QUALapprox=620;RAW_GT_COUNT=0,1,0;RAW_MQandDP=173241,49;ReadPosRankSum=-0.341;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:23,25,0:48:99:620,0,581,689,656,1344:13,10,16,9 +chrX 1452222 . C . . END=1452303 GT:DP:GQ:MIN_DP:PL 0/0:45:28:39:0,28,1007 +chrX 1452304 . T . . END=1452304 GT:DP:GQ:MIN_DP:PL 0/0:44:9:44:0,9,1132 +chrX 1452305 . C . . END=1452309 GT:DP:GQ:MIN_DP:PL 0/0:47:58:47:0,58,1149 +chrX 1452310 . T . . END=1452310 GT:DP:GQ:MIN_DP:PL 0/0:43:5:43:0,5,1036 +chrX 1452311 . C . . END=1452314 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,119,1438 +chrX 1452315 . A . . END=1452316 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,902 +chrX 1452317 . C . . END=1452443 GT:DP:GQ:MIN_DP:PL 0/0:50:59:50:0,59,1127 +chrX 1452444 . A . . END=1452444 GT:DP:GQ:MIN_DP:PL 0/0:52:0:52:0,0,1058 +chrX 1452445 . C . . END=1452454 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,119,1511 +chrX 1452455 . T . . END=1452455 GT:DP:GQ:MIN_DP:PL 0/0:51:18:51:0,18,1151 +chrX 1452456 . C . . END=1452577 GT:DP:GQ:MIN_DP:PL 0/0:47:28:46:0,28,1139 +chrX 1452578 . A . . END=1452578 GT:DP:GQ:MIN_DP:PL 0/0:50:0:50:0,0,1201 +chrX 1452579 . C . . END=1453117 GT:DP:GQ:MIN_DP:PL 0/0:53:35:53:0,35,1300 +chrX 1453118 . T . . END=1453118 GT:DP:GQ:MIN_DP:PL 0/0:54:0:54:0,0,1342 +chrX 1453119 . C . . END=1453144 GT:DP:GQ:MIN_DP:PL 0/0:56:46:56:0,46,1281 +chrX 1453145 . CT C, 717.60 . AS_QUALapprox=|725|0;AS_VarDP=26|23|0;BaseQRankSum=-0.550;DP=53;MQRankSum=-0.088;QUALapprox=725;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187965,53;ReadPosRankSum=-1.353;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:26,23,0:49:99:725,0,903,803,972,1774:6,20,10,13 +chrX 1453147 . C . . END=1453184 GT:DP:GQ:MIN_DP:PL 0/0:62:28:62:0,28,1434 +chrX 1453185 . T . . END=1453185 GT:DP:GQ:MIN_DP:PL 0/0:61:6:61:0,6,1525 +chrX 1453186 . C . . END=1453235 GT:DP:GQ:MIN_DP:PL 0/0:59:36:55:0,36,1310 +chrX 1453236 . T . . END=1453236 GT:DP:GQ:MIN_DP:PL 0/0:59:19:59:0,19,1544 +chrX 1453237 . C . . END=1453271 GT:DP:GQ:MIN_DP:PL 0/0:64:68:64:0,68,1601 +chrX 1453272 . T . . END=1453272 GT:DP:GQ:MIN_DP:PL 0/0:63:2:63:0,2,1554 +chrX 1453273 . C . . END=1453408 GT:DP:GQ:MIN_DP:PL 0/0:60:47:60:0,47,1316 +chrX 1453409 . G A, 517.64 . AS_QUALapprox=|525|0;AS_VarDP=24|21|0;BaseQRankSum=-1.098;DP=54;MQRankSum=0.000;QUALapprox=525;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=2.072;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:24,21,0:45:99:525,0,678,597,740,1337:6,18,10,11 +chrX 1453410 . G . . END=1453793 GT:DP:GQ:MIN_DP:PL 0/0:22:21:19:0,21,450 +chrX 1453794 . T . . END=1453794 GT:DP:GQ:MIN_DP:PL 0/0:15:0:15:0,0,352 +chrX 1453795 . G . . END=1453798 GT:DP:GQ:MIN_DP:PL 0/0:14:27:14:0,27,405 +chrX 1453799 . A . . END=1453799 GT:DP:GQ:MIN_DP:PL 0/0:13:0:13:0,0,293 +chrX 1453800 . T . . END=1453802 GT:DP:GQ:MIN_DP:PL 0/0:11:22:11:0,22,318 +chrX 1453803 . G . . END=1453932 GT:DP:GQ:MIN_DP:PL 0/0:4:0:4:0,0,0 +chrX 1453933 . G . . END=1453934 GT:DP:GQ:MIN_DP:PL 0/0:9:27:9:0,27,282 +chrX 1453935 . T . . END=1453935 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,49 +chrX 1453936 . G . . END=1453938 GT:DP:GQ:MIN_DP:PL 0/0:14:36:12:0,36,417 +chrX 1453939 . A . . END=1453939 GT:DP:GQ:MIN_DP:PL 0/0:12:0:12:0,0,150 +chrX 1453940 . G . . END=1453943 GT:DP:GQ:MIN_DP:PL 0/0:15:42:15:0,42,436 +chrX 1453944 . C . . END=1453944 GT:DP:GQ:MIN_DP:PL 0/0:10:0:10:0,0,59 +chrX 1453945 . G . . END=1453945 GT:DP:GQ:MIN_DP:PL 0/0:15:45:15:0,45,450 +chrX 1453946 . T . . END=1453946 GT:DP:GQ:MIN_DP:PL 0/0:12:0:12:0,0,199 +chrX 1453947 . G . . END=1453948 GT:DP:GQ:MIN_DP:PL 0/0:17:48:17:0,48,516 +chrX 1453949 . A . . END=1453949 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,338 +chrX 1453950 . G . . END=1453950 GT:DP:GQ:MIN_DP:PL 0/0:18:54:18:0,54,505 +chrX 1453951 . A . . END=1453952 GT:DP:GQ:MIN_DP:PL 0/0:17:0:17:0,0,248 +chrX 1453953 . G . . END=1453968 GT:DP:GQ:MIN_DP:PL 0/0:26:28:20:0,28,549 +chrX 1453969 . C . . END=1453969 GT:DP:GQ:MIN_DP:PL 0/0:23:9:23:0,9,570 +chrX 1453970 . T . . END=1453976 GT:DP:GQ:MIN_DP:PL 0/0:29:67:29:0,67,789 +chrX 1453977 . A . . END=1453977 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,656 +chrX 1453978 . G . . END=1454019 GT:DP:GQ:MIN_DP:PL 0/0:28:26:23:0,26,562 +chrX 1454020 . T . . END=1454020 GT:DP:GQ:MIN_DP:PL 0/0:21:3:21:0,3,489 +chrX 1454021 . T . . END=1454021 GT:DP:GQ:MIN_DP:PL 0/0:21:28:21:0,28,549 +chrX 1454022 . T . . END=1454022 GT:DP:GQ:MIN_DP:PL 0/0:22:0:22:0,0,565 +chrX 1454023 . G . . END=1454133 GT:DP:GQ:MIN_DP:PL 0/0:25:31:20:0,31,567 +chrX 1454134 . T . . END=1454134 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,721 +chrX 1454135 . G . . END=1454137 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,114,1261 +chrX 1454138 . A . . END=1454138 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,739 +chrX 1454139 . G . . END=1454144 GT:DP:GQ:MIN_DP:PL 0/0:40:28:32:0,28,876 +chrX 1454145 . T . . END=1454145 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,725 +chrX 1454146 . G . . END=1454147 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,114,1710 +chrX 1454148 . A . . END=1454148 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,714 +chrX 1454149 . G . . END=1454149 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,111,1665 +chrX 1454150 . A . . END=1454151 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,739 +chrX 1454152 . G . . END=1454153 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,108,1161 +chrX 1454154 . T . . END=1454154 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,705 +chrX 1454155 . G . . END=1454159 GT:DP:GQ:MIN_DP:PL 0/0:38:92:38:0,92,1150 +chrX 1454160 . T . . END=1454160 GT:DP:GQ:MIN_DP:PL 0/0:34:3:34:0,3,794 +chrX 1454161 . C . . END=1454163 GT:DP:GQ:MIN_DP:PL 0/0:33:74:33:0,74,966 +chrX 1454164 . T . . END=1454164 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,848 +chrX 1454165 . G . . END=1454165 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,120,1800 +chrX 1454166 . T . . END=1454166 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,983 +chrX 1454167 . G . . END=1454169 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,120,1800 +chrX 1454170 . A . . END=1454170 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,879 +chrX 1454171 . G . . END=1454183 GT:DP:GQ:MIN_DP:PL 0/0:43:76:43:0,76,1017 +chrX 1454184 . T . . END=1454184 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,1063 +chrX 1454185 . G . . END=1454218 GT:DP:GQ:MIN_DP:PL 0/0:45:34:41:0,34,1047 +chrX 1454219 . T . . END=1454219 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,937 +chrX 1454220 . G . . END=1454229 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,108,1100 +chrX 1454230 . T . . END=1454230 GT:DP:GQ:MIN_DP:PL 0/0:43:6:43:0,6,1108 +chrX 1454231 . G . . END=1454921 GT:DP:GQ:MIN_DP:PL 0/0:69:80:69:0,80,1208 +chrX 1454922 . A G, 2165.06 . AS_QUALapprox=|2179|0;AS_VarDP=0|70|0;DP=72;QUALapprox=2179;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;VarDP=70 GT:AD:DP:GQ:PL:SB 1/1:0,70,0:70:99:2179,208,0,2179,208,2179:0,0,33,37 +chrX 1454923 . C . . END=1454968 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1454969 . C T, 918.64 . AS_QUALapprox=|926|0;AS_VarDP=33|35|0;BaseQRankSum=-0.903;DP=76;MQRankSum=0.084;QUALapprox=926;RAW_GT_COUNT=0,1,0;RAW_MQandDP=271025,76;ReadPosRankSum=-0.018;VarDP=68 GT:AD:DP:GQ:PL:SB 0/1:33,35,0:68:99:926,0,903,1026,1008,2033:14,19,17,18 +chrX 1454970 . G . . END=1455590 GT:DP:GQ:MIN_DP:PL 0/0:59:90:59:0,90,1665 +chrX 1455591 . T C, 891.64 . AS_QUALapprox=|899|0;AS_VarDP=26|33|0;BaseQRankSum=0.338;DP=61;MQRankSum=0.000;QUALapprox=899;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-0.710;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:26,33,0:59:99:899,0,656,977,755,1731:14,12,13,20 +chrX 1455592 . A . . END=1456047 GT:DP:GQ:MIN_DP:PL 0/0:70:97:70:0,97,1800 +chrX 1456048 . A G, 1890.06 . AS_QUALapprox=|1904|0;AS_VarDP=0|60|0;DP=61;QUALapprox=1904;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:1904,179,0,1904,179,1904:0,0,29,31 +chrX 1456049 . T . . END=1456285 GT:DP:GQ:MIN_DP:PL 0/0:55:84:55:0,84,1668 +chrX 1456286 . C CTT,CTTT, 1277.02 . AS_QUALapprox=|1104|979|0;AS_VarDP=0|21|15|0;DP=57;QUALapprox=1294;RAW_GT_COUNT=0,0,1;RAW_MQandDP=202598,57;VarDP=36 GT:AD:DP:GQ:PL:SB 1/2:0,21,15,0:36:99:1294,316,190,427,0,315,1045,309,413,953:0,0,16,20 +chrX 1456287 . T . . END=1456303 GT:DP:GQ:MIN_DP:PL 0/0:58:96:58:0,96,1440 +chrX 1456304 . A . . END=1456307 GT:DP:GQ:MIN_DP:PL 0/0:50:0:50:0,0,674 +chrX 1456308 . T . . END=1456391 GT:DP:GQ:MIN_DP:PL 0/0:41:37:37:0,37,1017 +chrX 1456392 . T C, 1232.06 . AS_QUALapprox=|1246|0;AS_VarDP=0|38|0;DP=41;QUALapprox=1246;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147600,41;VarDP=38 GT:AD:DP:GQ:PL:SB 1/1:0,38,0:38:99:1246,114,0,1246,114,1246:0,0,16,22 +chrX 1456393 . T . . END=1456519 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,103,1247 +chrX 1456520 . G A, 739.64 . AS_QUALapprox=|747|0;AS_VarDP=25|27|0;BaseQRankSum=0.059;DP=56;MQRankSum=0.000;QUALapprox=747;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=1.338;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:25,27,0:52:99:747,0,693,823,774,1596:14,11,15,12 +chrX 1456521 . C . . END=1456688 GT:DP:GQ:MIN_DP:PL 0/0:53:78:53:0,78,1504 +chrX 1456689 . C G, 1042.64 . AS_QUALapprox=|1050|0;AS_VarDP=28|39|0;BaseQRankSum=-0.114;DP=68;MQRankSum=0.905;QUALapprox=1050;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241040,68;ReadPosRankSum=0.814;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:28,39,0:67:99:1050,0,697,1133,814,1948:15,13,24,15 +chrX 1456690 . T . . END=1456768 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1456769 . G A, 1778.06 . AS_QUALapprox=|1792|0;AS_VarDP=0|54|0;DP=57;QUALapprox=1792;RAW_GT_COUNT=0,0,1;RAW_MQandDP=202736,57;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:1792,162,0,1792,162,1792:0,0,33,21 +chrX 1456770 . C . . END=1457425 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,111,1533 +chrX 1457426 . A G, 759.64 . AS_QUALapprox=|767|0;AS_VarDP=21|29|0;BaseQRankSum=-1.018;DP=52;MQRankSum=0.000;QUALapprox=767;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=-1.003;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:21,29,0:50:99:767,0,546,830,632,1462:17,4,21,8 +chrX 1457427 . G . . END=1458083 GT:DP:GQ:MIN_DP:PL 0/0:58:54:58:0,54,1319 +chrX 1458084 . A G, 534.64 . AS_QUALapprox=|542|0;AS_VarDP=27|24|0;BaseQRankSum=-1.061;DP=53;MQRankSum=1.317;QUALapprox=542;RAW_GT_COUNT=0,1,0;RAW_MQandDP=182613,53;ReadPosRankSum=-0.415;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:27,24,0:51:99:542,0,731,622,801,1423:19,8,14,10 +chrX 1458085 . A . . END=1458109 GT:DP:GQ:MIN_DP:PL 0/0:48:96:48:0,96,1345 +chrX 1458110 . C CTATG, 780.60 . AS_QUALapprox=|788|0;AS_VarDP=24|22|0;BaseQRankSum=-0.441;DP=55;MQRankSum=0.000;QUALapprox=788;RAW_GT_COUNT=0,1,0;RAW_MQandDP=193811,55;ReadPosRankSum=-2.167;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:24,22,0:46:99:788,0,932,861,998,1859:15,9,16,6 +chrX 1458111 . T . . END=1458188 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,107,1538 +chrX 1458189 . A AATCT, 2147.03 . AS_QUALapprox=|2161|0;AS_VarDP=3|52|0;BaseQRankSum=1.930;DP=59;MQRankSum=-0.160;QUALapprox=2161;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212281,59;ReadPosRankSum=-0.779;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:3,52,0:55:49:2161,49,0,2170,157,2278:2,1,25,27 +chrX 1458190 . A . . END=1458525 GT:DP:GQ:MIN_DP:PL 0/0:58:29:56:0,29,1331 +chrX 1458526 . T C, 628.64 . AS_QUALapprox=|636|0;AS_VarDP=34|27|0;BaseQRankSum=-1.252;DP=61;MQRankSum=0.000;QUALapprox=636;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-1.198;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:34,27,0:61:99:636,0,960,738,1040,1778:22,12,9,18 +chrX 1458527 . C . . END=1458579 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1458580 . CATCT C, 386.60 . AS_QUALapprox=|394|0;AS_VarDP=23|11|0;BaseQRankSum=1.263;DP=59;MQRankSum=0.754;QUALapprox=394;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212164,59;ReadPosRankSum=0.921;VarDP=34 GT:AD:DP:GQ:PL:SB 0/1:23,11,0:34:99:394,0,932,463,966,1429:15,8,5,6 +chrX 1458585 . A . . END=1459183 GT:DP:GQ:MIN_DP:PL 0/0:59:75:59:0,75,1324 +chrX 1459184 . CATCTATCCATTTATCCATCATCTATATATTAATTT C, 653.60 . AS_QUALapprox=|661|0;AS_VarDP=46|19|0;BaseQRankSum=0.576;DP=68;MQRankSum=0.000;QUALapprox=661;RAW_GT_COUNT=0,1,0;RAW_MQandDP=243904,68;ReadPosRankSum=0.525;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:46,19,0:65:99:661,0,1873,799,1932,2731:22,24,10,9 +chrX 1459220 . A . . END=1459325 GT:DP:GQ:MIN_DP:PL 0/0:60:52:60:0,52,1463 +chrX 1459326 . C CATCT, 448.60 . AS_QUALapprox=|456|0;AS_VarDP=21|13|0;BaseQRankSum=0.314;DP=50;MQRankSum=0.000;QUALapprox=456;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=-0.993;VarDP=34 GT:AD:DP:GQ:PL:SB 0/1:21,13,0:34:99:456,0,816,520,855,1375:9,12,6,7 +chrX 1459327 . A . . END=1459614 GT:DP:GQ:MIN_DP:PL 0/0:51:50:51:0,50,1408 +chrX 1459615 . C CATCT, 746.60 . AS_QUALapprox=|754|0;AS_VarDP=23|20|0;BaseQRankSum=0.562;DP=51;MQRankSum=0.000;QUALapprox=754;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-1.328;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:23,20,0:43:99:754,0,881,824,941,1765:15,8,12,8 +chrX 1459616 . A . . END=1460608 GT:DP:GQ:MIN_DP:PL 0/0:59:50:59:0,50,1116 +chrX 1460609 . T A, 611.64 . AS_QUALapprox=|619|0;AS_VarDP=26|26|0;BaseQRankSum=-1.807;DP=55;MQRankSum=0.000;QUALapprox=619;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=0.092;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:26,26,0:52:99:619,0,713,696,789,1486:11,15,10,16 +chrX 1460610 . C . . END=1461146 GT:DP:GQ:MIN_DP:PL 0/0:58:41:58:0,41,1325 +chrX 1461147 . C . . END=1461147 GT:DP:GQ:MIN_DP:PL 0/0:47:2:47:0,2,1254 +chrX 1461148 . T . . END=1461157 GT:DP:GQ:MIN_DP:PL 0/0:47:21:46:0,21,1305 +chrX 1461158 . A . . END=1461160 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,1027 +chrX 1461161 . C . . END=1461171 GT:DP:GQ:MIN_DP:PL 0/0:43:75:43:0,75,1125 +chrX 1461172 . T . . END=1461175 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,596 +chrX 1461176 . T . . END=1461243 GT:DP:GQ:MIN_DP:PL 0/0:39:25:37:0,25,1028 +chrX 1461244 . G A, 666.64 . AS_QUALapprox=|674|0;AS_VarDP=24|19|0;BaseQRankSum=-0.219;DP=43;MQRankSum=0.000;QUALapprox=674;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154800,43;ReadPosRankSum=-1.036;VarDP=43 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,19,0:43:99:0|1:1461244_G_A:674,0,929,746,986,1732:1461244:13,11,5,14 +chrX 1461245 . G . . END=1461250 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,112,1391 +chrX 1461251 . C T, 666.64 . AS_QUALapprox=|674|0;AS_VarDP=24|19|0;BaseQRankSum=-0.399;DP=47;MQRankSum=0.000;QUALapprox=674;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=-1.578;VarDP=43 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,19,0:43:99:0|1:1461244_G_A:674,0,929,746,986,1732:1461244:13,11,6,13 +chrX 1461252 . G . . END=1461665 GT:DP:GQ:MIN_DP:PL 0/0:56:72:56:0,72,1439 +chrX 1461666 . A G, 668.64 . AS_QUALapprox=|676|0;AS_VarDP=28|26|0;BaseQRankSum=0.136;DP=60;MQRankSum=-0.589;QUALapprox=676;RAW_GT_COUNT=0,1,0;RAW_MQandDP=206222,60;ReadPosRankSum=-0.424;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:28,26,0:54:99:676,0,751,761,829,1590:16,12,11,15 +chrX 1461667 . C . . END=1461848 GT:DP:GQ:MIN_DP:PL 0/0:56:32:46:0,32,1371 +chrX 1461849 . C A, 791.04 . AS_QUALapprox=|843|0;AS_VarDP=23|22|0;BaseQRankSum=-1.541;DP=47;MQRankSum=-1.924;QUALapprox=843;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162019,47;ReadPosRankSum=2.086;VarDP=45 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,22,0:45:99:0|1:1461849_C_A:843,0,878,849,943,1777:1461849:8,15,11,8 +chrX 1461850 . T . . END=1461850 GT:DP:GQ:MIN_DP:PL 0/0:44:28:44:0,28,1311 +chrX 1461851 . C CTAATATA, 791.01 . AS_QUALapprox=|840|0;AS_VarDP=24|22|0;BaseQRankSum=0.521;DP=47;MQRankSum=-1.966;QUALapprox=840;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162019,47;ReadPosRankSum=1.792;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,22,0:46:99:0|1:1461849_C_A:840,0,920,849,982,1814:1461849:9,15,11,8 +chrX 1461852 . T . . END=1461853 GT:DP:GQ:MIN_DP:PL 0/0:45:28:44:0,28,1291 +chrX 1461854 . T TA, 791.01 . AS_QUALapprox=|840|0;AS_VarDP=24|22|0;BaseQRankSum=-0.105;DP=47;MQRankSum=-1.966;QUALapprox=840;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162019,47;ReadPosRankSum=0.602;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,22,0:46:99:0|1:1461849_C_A:840,0,932,849,988,1818:1461849:9,15,11,8 +chrX 1461855 . C . . END=1461856 GT:DP:GQ:MIN_DP:PL 0/0:45:31:45:0,31,1326 +chrX 1461857 . A . . END=1461857 GT:DP:GQ:MIN_DP:PL 0/0:44:3:44:0,3,1160 +chrX 1461858 . T . . END=1461864 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,103,1469 +chrX 1461865 . A G, 681.64 . AS_QUALapprox=|689|0;AS_VarDP=25|19|0;BaseQRankSum=-0.476;DP=52;MQRankSum=-1.378;QUALapprox=689;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176654,52;ReadPosRankSum=0.047;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,19,0:44:99:0|1:1461849_C_A:689,0,993,765,1050,1816:1461849:10,15,11,8 +chrX 1461866 . A ATC, 681.60 . AS_QUALapprox=|689|0;AS_VarDP=25|19|0;BaseQRankSum=-0.903;DP=52;MQRankSum=-1.378;QUALapprox=689;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176654,52;ReadPosRankSum=-0.083;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,19,0:44:99:0|1:1461849_C_A:689,0,993,765,1050,1816:1461849:10,15,11,8 +chrX 1461867 . T . . END=1461867 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,120,1800 +chrX 1461868 . A ATCATCTGTC, 682.60 . AS_QUALapprox=|690|0;AS_VarDP=25|19|0;BaseQRankSum=-1.742;DP=52;MQRankSum=-1.378;QUALapprox=690;RAW_GT_COUNT=0,1,0;RAW_MQandDP=175554,52;ReadPosRankSum=-0.415;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,19,0:44:99:0|1:1461849_C_A:690,0,993,765,1050,1816:1461849:10,15,11,8 +chrX 1461869 . T . . END=1461873 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,120,1800 +chrX 1461874 . A ACTAT,AT, 2223.02 . AS_QUALapprox=|1618|1205|0;AS_VarDP=0|24|17|0;DP=57;QUALapprox=2240;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190971,57;VarDP=41 GT:AD:DP:GQ:PL:SB 1/2:0,24,17,0:41:99:2240,733,622,1035,0,1082,2015,741,1107,2039:0,0,19,22 +chrX 1461875 . C . . END=1461879 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 1461880 . TG T, 583.60 . AS_QUALapprox=|591|0;AS_VarDP=27|16|0;BaseQRankSum=-2.619;DP=56;MQRankSum=-1.670;QUALapprox=591;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187371,56;ReadPosRankSum=-1.477;VarDP=43 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,16,0:43:99:0|1:1461849_C_A:591,0,1085,673,1134,1807:1461849:11,16,11,5 +chrX 1461882 . A . . END=1461887 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,120,1800 +chrX 1461888 . C CT,CATCTGTCTATCTATCTATCTATCTATCT, 550.60 . AS_QUALapprox=|558|0|0;AS_VarDP=22|15|0|0;BaseQRankSum=-2.389;DP=55;MQRankSum=-1.521;QUALapprox=558;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183535,55;ReadPosRankSum=-2.273;VarDP=37 GT:AD:DP:GQ:PL:SB 0/1:22,15,0,0:37:99:558,0,962,670,962,2212,675,1010,1929,1926:8,14,10,5 +chrX 1461889 . A . . END=1461917 GT:DP:GQ:MIN_DP:PL 0/0:48:75:48:0,75,1125 +chrX 1461918 . G . . END=1461918 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,143 +chrX 1461919 . A . . END=1461930 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,103,1439 +chrX 1461931 . GATCT G, 0.17 . AS_QUALapprox=|5|0;AS_VarDP=21|2|0;BaseQRankSum=-3.386;DP=54;MQRankSum=-4.574;QUALapprox=5;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169375,54;ReadPosRankSum=-1.256;VarDP=23 GT:AD:DP:GQ:PL:SB 0/1:21,2,0:23:5:5,0,865,68,875,943:9,12,2,0 +chrX 1461936 . A . . END=1461994 GT:DP:GQ:MIN_DP:PL 0/0:48:47:48:0,47,1255 +chrX 1461995 . A . . END=1461995 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,267 +chrX 1461996 . T . . END=1462002 GT:DP:GQ:MIN_DP:PL 0/0:37:20:36:0,20,1035 +chrX 1462003 . A . . END=1462003 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,465 +chrX 1462004 . A . . END=1462004 GT:DP:GQ:MIN_DP:PL 0/0:37:51:37:0,51,1035 +chrX 1462005 . T . . END=1462005 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,337 +chrX 1462006 . C . . END=1462006 GT:DP:GQ:MIN_DP:PL 0/0:36:34:36:0,34,962 +chrX 1462007 . T . . END=1462008 GT:DP:GQ:MIN_DP:PL 0/0:36:13:36:0,13,921 +chrX 1462009 . T . . END=1462014 GT:DP:GQ:MIN_DP:PL 0/0:36:37:36:0,37,900 +chrX 1462015 . A . . END=1462015 GT:DP:GQ:MIN_DP:PL 0/0:37:2:37:0,2,988 +chrX 1462016 . T . . END=1462018 GT:DP:GQ:MIN_DP:PL 0/0:34:32:34:0,32,962 +chrX 1462019 . A . . END=1462020 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,99 +chrX 1462021 . C . . END=1462039 GT:DP:GQ:MIN_DP:PL 0/0:34:38:33:0,38,943 +chrX 1462040 . ACTAT A,ACTATCTAT, 391.01 . AS_QUALapprox=|0|405|0;AS_VarDP=0|0|9|0;DP=13;QUALapprox=405;RAW_GT_COUNT=0,0,1;RAW_MQandDP=46800,13;VarDP=9 GT:AD:DP:GQ:PL:SB 2/2:0,0,9,0:9:27:405,411,478,27,33,0,411,447,33,442:0,0,5,4 +chrX 1462045 . C . . END=1462068 GT:DP:GQ:MIN_DP:PL 0/0:32:27:28:0,27,675 +chrX 1462069 . C . . END=1462084 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,348 +chrX 1462085 . C . . END=1462086 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1003 +chrX 1462087 . A . . END=1462087 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,759 +chrX 1462088 . T . . END=1462089 GT:DP:GQ:MIN_DP:PL 0/0:31:79:31:0,79,948 +chrX 1462090 . T . . END=1462090 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,863 +chrX 1462091 . A . . END=1462109 GT:DP:GQ:MIN_DP:PL 0/0:38:90:38:0,90,1072 +chrX 1462110 . C . . END=1462110 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,0 +chrX 1462111 . A . . END=1462139 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,102,1266 +chrX 1462140 . C . . END=1462143 GT:DP:GQ:MIN_DP:PL 0/0:54:0:54:0,0,1209 +chrX 1462144 . C . . END=1462163 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,116,1683 +chrX 1462164 . C . . END=1462167 GT:DP:GQ:MIN_DP:PL 0/0:60:0:60:0,0,1354 +chrX 1462168 . C . . END=1462175 GT:DP:GQ:MIN_DP:PL 0/0:59:93:59:0,93,1395 +chrX 1462176 . C . . END=1462179 GT:DP:GQ:MIN_DP:PL 0/0:61:0:61:0,0,238 +chrX 1462180 . C . . END=1462214 GT:DP:GQ:MIN_DP:PL 0/0:63:87:63:0,87,1800 +chrX 1462215 . A ACTAT,ACTATCTATCTATCTAATCTATCTACTATCTATCTATCTACTATCTAATCTATCTACTCTCTATCTACCTATCTAATCTATCTACTATCTATCTATCTAATCTATCTACTATCTATCTACCTATCTAATCTATCTACTATCTATCTAATCTATCTACTAT, 945.60 . AS_QUALapprox=|953|225|0;AS_VarDP=0|18|0|0;DP=64;QUALapprox=953;RAW_GT_COUNT=0,1,0;RAW_MQandDP=202528,64;VarDP=18 GT:AD:DP:GQ:PL:SB 0/1:0,18,0,0:18:10:953,0,763,728,10,1034,923,471,963,1446:0,0,10,8 +chrX 1462216 . C . . END=1462243 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,117,1755 +chrX 1462244 . C CTAT, 59.60 . AS_QUALapprox=|67|0;AS_VarDP=27|4|0;DP=54;MQRankSum=-3.666;QUALapprox=67;RAW_GT_COUNT=0,1,0;RAW_MQandDP=170837,54;VarDP=31 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,4,0:31:67:0|1:1462244_C_CTAT:67,0,1136,160,1148,1309:1462244:15,12,2,2 +chrX 1462245 . C CTATCTACTATCTAATCTATCTACTCTCTATCTACCTATCTAATCTATCTACT, 59.60 . AS_QUALapprox=|67|0;AS_VarDP=27|4|0;DP=54;MQRankSum=-3.666;QUALapprox=67;RAW_GT_COUNT=0,1,0;RAW_MQandDP=170837,54;ReadPosRankSum=-3.156;VarDP=31 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,4,0:31:67:0|1:1462244_C_CTAT:67,0,1136,160,1148,1309:1462244:15,12,2,2 +chrX 1462246 . A . . END=1462257 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 1462258 . A ACTAT,AATCTATCTACTATCTATCTACCTATCTAATCTATCTACTAT, 1046.60 . AS_QUALapprox=|756|1054|0;AS_VarDP=26|0|8|0;BaseQRankSum=-0.973;DP=57;MQRankSum=-4.251;QUALapprox=1054;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180805,57;ReadPosRankSum=-2.920;VarDP=34 GT:AD:DP:GQ:PL:SB 0/2:26,0,8,0:34:99:1054,298,1377,0,1017,1049,766,1418,1117,1839:15,11,3,5 +chrX 1462259 . C . . END=1462274 GT:DP:GQ:MIN_DP:PL 0/0:57:93:57:0,93,1395 +chrX 1462275 . C . . END=1462278 GT:DP:GQ:MIN_DP:PL 0/0:59:0:59:0,0,271 +chrX 1462279 . C . . END=1462292 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 1462293 . A AATCTATCTACTATCCATCT, 223.60 . AS_QUALapprox=|231|0;AS_VarDP=25|8|0;BaseQRankSum=0.379;DP=67;MQRankSum=-4.175;QUALapprox=231;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219275,67;ReadPosRankSum=2.960;VarDP=33 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,8,0:33:99:0|1:1462244_C_CTAT:231,0,1052,329,1077,1405:1462244:16,9,3,5 +chrX 1462294 . A . . END=1462320 GT:DP:GQ:MIN_DP:PL 0/0:65:78:65:0,78,1170 +chrX 1462321 . T TACTATCTATCTATCTAATCTATCTACTATCTATCTATCTAA, 205.60 . AS_QUALapprox=|213|0;AS_VarDP=18|7|0;BaseQRankSum=0.052;DP=63;MQRankSum=-3.855;QUALapprox=213;RAW_GT_COUNT=0,1,0;RAW_MQandDP=206275,63;ReadPosRankSum=-3.372;VarDP=25 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:18,7,0:25:99:0|1:1462244_C_CTAT:213,0,767,294,788,1082:1462244:10,8,3,4 +chrX 1462322 . T . . END=1462356 GT:DP:GQ:MIN_DP:PL 0/0:54:32:52:0,32,887 +chrX 1462357 . GTCTA G,ATCTA, 817.06 . AS_QUALapprox=|783|27|0;AS_VarDP=0|21|0|0;DP=56;QUALapprox=834;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198874,56;VarDP=21 GT:AD:DP:GQ:PL:SB 1/2:0,21,0,0:21:51:834,51,1319,807,0,824,935,769,904,1572:0,0,12,9 +chrX 1462362 . T . . END=1462370 GT:DP:GQ:MIN_DP:PL 0/0:53:90:53:0,90,1643 +chrX 1462371 . C G,CTATG, 1207.64 . AS_QUALapprox=|1215|1164|0;AS_VarDP=0|0|0|0;DP=54;QUALapprox=1215;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194049,54;VarDP=22 GT:AD:DP:GQ:PL:SB 0/1:22,0,0,0:22:51:1215,0,830,51,854,881,712,923,974,1543:13,9,0,0 +chrX 1462372 . T . . END=1462393 GT:DP:GQ:MIN_DP:PL 0/0:49:47:49:0,47,1344 +chrX 1462394 . C . . END=1462394 GT:DP:GQ:MIN_DP:PL 0/0:46:19:46:0,19,1240 +chrX 1462395 . C . . END=1462597 GT:DP:GQ:MIN_DP:PL 0/0:52:97:52:0,97,1410 +chrX 1462598 . GT G, 470.60 . AS_QUALapprox=|478|0;AS_VarDP=20|20|0;BaseQRankSum=-1.414;DP=47;MQRankSum=0.000;QUALapprox=478;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=-0.203;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:20,20,0:40:99:478,0,456,538,517,1055:10,10,5,15 +chrX 1462600 . T . . END=1462976 GT:DP:GQ:MIN_DP:PL 0/0:60:81:60:0,81,1478 +chrX 1462977 . CA C, 514.60 . AS_QUALapprox=|522|0;AS_VarDP=24|24|0;BaseQRankSum=1.670;DP=58;MQRankSum=0.000;QUALapprox=522;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-0.970;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:24,24,0:48:99:522,0,497,594,569,1164:12,12,19,5 +chrX 1462979 . A . . END=1464549 GT:DP:GQ:MIN_DP:PL 0/0:62:85:62:0,85,1543 +chrX 1464550 . C G, 605.64 . AS_QUALapprox=|613|0;AS_VarDP=30|25|0;BaseQRankSum=-0.010;DP=57;MQRankSum=0.000;QUALapprox=613;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-0.262;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:30,25,0:55:99:613,0,746,703,821,1523:14,16,17,8 +chrX 1464551 . G . . END=1464646 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1464647 . G C, 950.64 . AS_QUALapprox=|958|0;AS_VarDP=30|37|0;BaseQRankSum=-1.269;DP=68;MQRankSum=0.000;QUALapprox=958;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=-1.741;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:30,37,0:67:99:958,0,792,1048,903,1951:12,18,14,23 +chrX 1464648 . G . . END=1465275 GT:DP:GQ:MIN_DP:PL 0/0:58:84:58:0,84,1514 +chrX 1465276 . T C, 885.64 . AS_QUALapprox=|893|0;AS_VarDP=20|32|0;BaseQRankSum=-2.025;DP=54;MQRankSum=0.000;QUALapprox=893;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=-0.320;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:20,32,0:52:99:893,0,528,954,625,1578:12,8,14,18 +chrX 1465277 . G . . END=1466606 GT:DP:GQ:MIN_DP:PL 0/0:65:97:65:0,97,1593 +chrX 1466607 . T C, 2426.06 . AS_QUALapprox=|2440|0;AS_VarDP=0|78|0;DP=79;QUALapprox=2440;RAW_GT_COUNT=0,0,1;RAW_MQandDP=284400,79;VarDP=78 GT:AD:DP:GQ:PL:SB 1/1:0,78,0:78:99:2440,233,0,2440,233,2440:0,0,39,39 +chrX 1466608 . A . . END=1466709 GT:DP:GQ:MIN_DP:PL 0/0:79:99:79:0,120,1800 +chrX 1466710 . T TCCTC, 928.60 . AS_QUALapprox=|936|0;AS_VarDP=18|24|0;BaseQRankSum=-1.044;DP=60;MQRankSum=0.000;QUALapprox=936;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=-0.699;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:18,24,0:42:99:936,0,673,991,745,1736:5,13,7,17 +chrX 1466711 . C . . END=1466730 GT:DP:GQ:MIN_DP:PL 0/0:65:46:65:0,46,1502 +chrX 1466731 . A . . END=1466732 GT:DP:GQ:MIN_DP:PL 0/0:53:0:53:0,0,1283 +chrX 1466733 . T . . END=1466863 GT:DP:GQ:MIN_DP:PL 0/0:48:72:48:0,72,1310 +chrX 1466864 . CTCCT C, 1166.03 . AS_QUALapprox=|1180|0;AS_VarDP=2|31|0;BaseQRankSum=1.374;DP=53;MQRankSum=0.000;QUALapprox=1180;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187801,53;ReadPosRankSum=-0.642;VarDP=33 GT:AD:DP:GQ:PL:SB 1/1:2,31,0:33:70:1180,70,0,1186,93,1209:2,0,14,17 +chrX 1466869 . T . . END=1466950 GT:DP:GQ:MIN_DP:PL 0/0:38:38:36:0,38,940 +chrX 1466951 . C T, 1401.06 . AS_QUALapprox=|1415|0;AS_VarDP=0|41|0;DP=43;QUALapprox=1415;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154800,43;VarDP=41 GT:AD:DP:GQ:PL:SB 1/1:0,41,0:41:99:1415,123,0,1415,123,1415:0,0,9,32 +chrX 1466952 . G . . END=1466983 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,117,1589 +chrX 1466984 . T TG, 1415.03 . AS_QUALapprox=|1429|0;AS_VarDP=0|44|0;DP=52;QUALapprox=1429;RAW_GT_COUNT=0,0,1;RAW_MQandDP=185904,52;VarDP=44 GT:AD:DP:GQ:PL:SB 1/1:0,44,0:44:99:1429,132,0,1429,132,1429:0,0,17,27 +chrX 1466985 . G . . END=1467035 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,101,1420 +chrX 1467036 . G GACTC, 2056.03 . AS_QUALapprox=|2070|0;AS_VarDP=0|46|0;DP=49;QUALapprox=2070;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,46,0:46:99:0|1:1467036_G_GACTC:2070,138,0,2070,138,2070:1467036:0,0,23,23 +chrX 1467037 . A . . END=1467050 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,120,1800 +chrX 1467051 . G T, 2340.06 . AS_QUALapprox=|2354|0;AS_VarDP=0|53|0;DP=54;QUALapprox=2354;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,53,0:53:99:0|1:1467036_G_GACTC:2354,160,0,2354,160,2354:1467036:0,0,25,28 +chrX 1467052 . T . . END=1467055 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 1467056 . C T, 2364.06 . AS_QUALapprox=|2378|0;AS_VarDP=0|54|0;DP=56;QUALapprox=2378;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,54,0:54:99:0|1:1467036_G_GACTC:2378,163,0,2378,163,2378:1467036:0,0,27,27 +chrX 1467057 . G . . END=1467407 GT:DP:GQ:MIN_DP:PL 0/0:58:98:58:0,98,1454 +chrX 1467408 . G A, 772.64 . AS_QUALapprox=|780|0;AS_VarDP=35|31|0;BaseQRankSum=1.326;DP=68;MQRankSum=0.000;QUALapprox=780;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=-0.842;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:35,31,0:66:99:780,0,813,884,906,1790:21,14,21,10 +chrX 1467409 . T . . END=1467532 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 1467533 . G C, 1882.06 . AS_QUALapprox=|1896|0;AS_VarDP=0|58|0;DP=62;QUALapprox=1896;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=58 GT:AD:DP:GQ:PL:SB 1/1:0,58,0:58:99:1896,174,0,1896,174,1896:0,0,31,27 +chrX 1467534 . T . . END=1467970 GT:DP:GQ:MIN_DP:PL 0/0:65:83:65:0,83,1603 +chrX 1467971 . G A, 538.64 . AS_QUALapprox=|546|0;AS_VarDP=27|21|0;BaseQRankSum=0.898;DP=50;MQRankSum=0.000;QUALapprox=546;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=0.301;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:27,21,0:48:99:546,0,699,627,762,1389:11,16,7,14 +chrX 1467972 . T . . END=1468128 GT:DP:GQ:MIN_DP:PL 0/0:49:27:47:0,27,1155 +chrX 1468129 . G . . END=1468129 GT:DP:GQ:MIN_DP:PL 0/0:52:0:52:0,0,1330 +chrX 1468130 . G . . END=1468133 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,105,1612 +chrX 1468134 . G . . END=1468134 GT:DP:GQ:MIN_DP:PL 0/0:53:11:53:0,11,1334 +chrX 1468135 . G . . END=1468318 GT:DP:GQ:MIN_DP:PL 0/0:58:64:58:0,64,1488 +chrX 1468319 . G A, 1219.64 . AS_QUALapprox=|1227|0;AS_VarDP=25|42|0;BaseQRankSum=1.569;DP=67;MQRankSum=0.000;QUALapprox=1227;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=-1.265;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:25,42,0:67:99:1227,0,617,1303,744,2046:12,13,27,15 +chrX 1468320 . T . . END=1468746 GT:DP:GQ:MIN_DP:PL 0/0:59:43:59:0,43,645 +chrX 1468747 . C . . END=1468755 GT:DP:GQ:MIN_DP:PL 0/0:22:0:22:0,0,225 +chrX 1468756 . C . . END=1468758 GT:DP:GQ:MIN_DP:PL 0/0:20:21:20:0,21,315 +chrX 1468759 . C . . END=1468759 GT:DP:GQ:MIN_DP:PL 0/0:17:0:17:0,0,0 +chrX 1468760 . C . . END=1468761 GT:DP:GQ:MIN_DP:PL 0/0:19:21:19:0,21,315 +chrX 1468762 . T . . END=1468971 GT:DP:GQ:MIN_DP:PL 0/0:5:0:5:0,0,0 +chrX 1468972 . C . . END=1468973 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,213 +chrX 1468974 . C . . END=1468975 GT:DP:GQ:MIN_DP:PL 0/0:7:7:7:0,7,194 +chrX 1468976 . C . . END=1468978 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,213 +chrX 1468979 . C . . END=1468987 GT:DP:GQ:MIN_DP:PL 0/0:7:0:7:0,0,0 +chrX 1468988 . C . . END=1468993 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,258 +chrX 1468994 . C . . END=1468996 GT:DP:GQ:MIN_DP:PL 0/0:9:0:9:0,0,198 +chrX 1468997 . T . . END=1468998 GT:DP:GQ:MIN_DP:PL 0/0:9:24:9:0,24,360 +chrX 1468999 . C . . END=1469003 GT:DP:GQ:MIN_DP:PL 0/0:9:0:9:0,0,163 +chrX 1469004 . T . . END=1469007 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,203 +chrX 1469008 . C . . END=1469009 GT:DP:GQ:MIN_DP:PL 0/0:7:0:7:0,0,174 +chrX 1469010 . C . . END=1469011 GT:DP:GQ:MIN_DP:PL 0/0:8:24:8:0,24,258 +chrX 1469012 . C . . END=1469012 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,199 +chrX 1469013 . C . . END=1469014 GT:DP:GQ:MIN_DP:PL 0/0:9:24:9:0,24,278 +chrX 1469015 . T . . END=1469015 GT:DP:GQ:MIN_DP:PL 0/0:7:0:7:0,0,153 +chrX 1469016 . C . . END=1469018 GT:DP:GQ:MIN_DP:PL 0/0:10:24:10:0,24,248 +chrX 1469019 . T . . END=1469019 GT:DP:GQ:MIN_DP:PL 0/0:10:15:10:0,15,218 +chrX 1469020 . C . . END=1469023 GT:DP:GQ:MIN_DP:PL 0/0:12:21:11:0,21,338 +chrX 1469024 . C . . END=1469024 GT:DP:GQ:MIN_DP:PL 0/0:11:19:11:0,19,313 +chrX 1469025 . C . . END=1469032 GT:DP:GQ:MIN_DP:PL 0/0:17:20:14:0,20,387 +chrX 1469033 . T . . END=1469033 GT:DP:GQ:MIN_DP:PL 0/0:17:16:17:0,16,461 +chrX 1469034 . C . . END=1469034 GT:DP:GQ:MIN_DP:PL 0/0:18:51:18:0,51,765 +chrX 1469035 . CCCTTCCTTCT C, 61.60 . AS_QUALapprox=|69|0;AS_VarDP=5|2|0;BaseQRankSum=0.000;DP=18;MQRankSum=0.712;QUALapprox=69;RAW_GT_COUNT=0,1,0;RAW_MQandDP=56125,18;ReadPosRankSum=-0.524;VarDP=7 GT:AD:DP:GQ:PL:SB 0/1:5,2,0:7:69:69,0,204,84,210,294:3,2,0,2 +chrX 1469046 . C . . END=1469046 GT:DP:GQ:MIN_DP:PL 0/0:19:48:19:0,48,720 +chrX 1469047 . C . . END=1469049 GT:DP:GQ:MIN_DP:PL 0/0:20:0:20:0,0,432 +chrX 1469050 . C . . END=1469062 GT:DP:GQ:MIN_DP:PL 0/0:19:24:17:0,24,360 +chrX 1469063 . C . . END=1469074 GT:DP:GQ:MIN_DP:PL 0/0:17:0:17:0,0,0 +chrX 1469075 . C . . END=1469085 GT:DP:GQ:MIN_DP:PL 0/0:20:25:20:0,25,520 +chrX 1469086 . T . . END=1469086 GT:DP:GQ:MIN_DP:PL 0/0:21:0:21:0,0,402 +chrX 1469087 . C . . END=1469087 GT:DP:GQ:MIN_DP:PL 0/0:20:54:20:0,54,810 +chrX 1469088 . C . . END=1469088 GT:DP:GQ:MIN_DP:PL 0/0:21:3:21:0,3,561 +chrX 1469089 . T . . END=1469102 GT:DP:GQ:MIN_DP:PL 0/0:20:35:20:0,35,585 +chrX 1469103 . T . . END=1469103 GT:DP:GQ:MIN_DP:PL 0/0:21:14:21:0,14,561 +chrX 1469104 . C . . END=1469117 GT:DP:GQ:MIN_DP:PL 0/0:21:28:20:0,28,589 +chrX 1469118 . T . . END=1469118 GT:DP:GQ:MIN_DP:PL 0/0:20:0:20:0,0,487 +chrX 1469119 . C . . END=1469119 GT:DP:GQ:MIN_DP:PL 0/0:24:37:24:0,37,684 +chrX 1469120 . T . . END=1469120 GT:DP:GQ:MIN_DP:PL 0/0:22:7:22:0,7,576 +chrX 1469121 . C . . END=1469124 GT:DP:GQ:MIN_DP:PL 0/0:21:25:20:0,25,585 +chrX 1469125 . T . . END=1469125 GT:DP:GQ:MIN_DP:PL 0/0:22:17:22:0,17,596 +chrX 1469126 . C . . END=1469153 GT:DP:GQ:MIN_DP:PL 0/0:26:29:24:0,29,666 +chrX 1469154 . T . . END=1469154 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,670 +chrX 1469155 . C . . END=1469163 GT:DP:GQ:MIN_DP:PL 0/0:32:67:32:0,67,876 +chrX 1469164 . T . . END=1469164 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,669 +chrX 1469165 . C . . END=1469780 GT:DP:GQ:MIN_DP:PL 0/0:51:67:51:0,67,942 +chrX 1469781 . C A, 640.64 . AS_QUALapprox=|648|0;AS_VarDP=25|25|0;BaseQRankSum=-0.903;DP=52;MQRankSum=0.000;QUALapprox=648;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=0.291;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:25,25,0:50:99:648,0,664,723,739,1462:15,10,17,8 +chrX 1469782 . C . . END=1470052 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,103,1617 +chrX 1470053 . A C, 725.64 . AS_QUALapprox=|733|0;AS_VarDP=34|29|0;BaseQRankSum=0.200;DP=65;MQRankSum=0.000;QUALapprox=733;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=0.414;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:34,29,0:63:99:733,0,888,834,975,1809:19,15,14,15 +chrX 1470054 . T . . END=1470200 GT:DP:GQ:MIN_DP:PL 0/0:60:58:60:0,58,1563 +chrX 1470201 . T . . END=1470201 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1255 +chrX 1470202 . T TAAAC, 702.60 . AS_QUALapprox=|710|0;AS_VarDP=14|18|0;BaseQRankSum=-1.297;DP=45;MQRankSum=-2.324;QUALapprox=710;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154905,45;ReadPosRankSum=-0.741;VarDP=32 GT:AD:DP:GQ:PL:SB 0/1:14,18,0:32:99:710,0,534,752,588,1341:6,8,9,9 +chrX 1470203 . A . . END=1470309 GT:DP:GQ:MIN_DP:PL 0/0:66:41:66:0,41,1320 +chrX 1470310 . A G, 710.64 . AS_QUALapprox=|718|0;AS_VarDP=33|30|0;BaseQRankSum=-1.975;DP=64;MQRankSum=-4.580;QUALapprox=718;RAW_GT_COUNT=0,1,0;RAW_MQandDP=200315,64;ReadPosRankSum=-1.872;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:33,30,0:63:99:718,0,908,818,998,1815:15,18,17,13 +chrX 1470311 . A . . END=1471161 GT:DP:GQ:MIN_DP:PL 0/0:58:20:51:0,20,1316 +chrX 1471162 . C T, 689.64 . AS_QUALapprox=|697|0;AS_VarDP=29|25|0;BaseQRankSum=1.244;DP=56;MQRankSum=0.000;QUALapprox=697;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=0.573;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:29,25,0:54:99:697,0,805,784,880,1664:15,14,15,10 +chrX 1471163 . G . . END=1471305 GT:DP:GQ:MIN_DP:PL 0/0:67:45:67:0,45,1607 +chrX 1471306 . C . . END=1471308 GT:DP:GQ:MIN_DP:PL 0/0:60:0:60:0,0,1408 +chrX 1471309 . A T, 622.64 . AS_QUALapprox=|630|0;AS_VarDP=19|22|0;BaseQRankSum=-1.932;DP=43;MQRankSum=-1.904;QUALapprox=630;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147361,43;ReadPosRankSum=2.329;VarDP=41 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:19,22,0:41:99:0|1:1471309_A_T:630,0,503,685,568,1253:1471309:5,14,12,10 +chrX 1471310 . T . . END=1471313 GT:DP:GQ:MIN_DP:PL 0/0:37:18:37:0,18,270 +chrX 1471314 . T . . END=1471330 GT:DP:GQ:MIN_DP:PL 0/0:36:21:34:0,21,315 +chrX 1471331 . TGTAA T, 402.60 . AS_QUALapprox=|410|0;AS_VarDP=24|14|0;BaseQRankSum=-0.181;DP=40;MQRankSum=-2.060;QUALapprox=410;RAW_GT_COUNT=0,1,0;RAW_MQandDP=134561,40;ReadPosRankSum=-0.552;VarDP=38 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,14,0:38:99:0|1:1471309_A_T:410,0,771,479,813,1292:1471309:10,14,8,6 +chrX 1471336 . T . . END=1471412 GT:DP:GQ:MIN_DP:PL 0/0:27:31:23:0,31,685 +chrX 1471413 . C T, 395.64 . AS_QUALapprox=|403|0;AS_VarDP=29|17|0;BaseQRankSum=0.724;DP=48;MQRankSum=0.000;QUALapprox=403;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=-0.934;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:29,17,0:46:99:403,0,730,490,781,1271:16,13,6,11 +chrX 1471414 . T . . END=1471464 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,102,1309 +chrX 1471465 . AT A, 501.60 . AS_QUALapprox=|509|0;AS_VarDP=16|23|0;BaseQRankSum=-1.014;DP=46;MQRankSum=0.000;QUALapprox=509;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=-0.329;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:16,23,0:39:99:509,0,307,557,375,932:8,8,12,11 +chrX 1471467 . T . . END=1471553 GT:DP:GQ:MIN_DP:PL 0/0:47:69:47:0,69,1166 +chrX 1471554 . G A, 541.64 . AS_QUALapprox=|549|0;AS_VarDP=26|21|0;BaseQRankSum=1.238;DP=52;MQRankSum=0.000;QUALapprox=549;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=1.584;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:26,21,0:47:99:549,0,658,627,721,1347:12,14,14,7 +chrX 1471555 . C . . END=1471763 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,119,1468 +chrX 1471764 . A G, 735.64 . AS_QUALapprox=|743|0;AS_VarDP=23|29|0;BaseQRankSum=-0.455;DP=52;MQRankSum=0.000;QUALapprox=743;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=0.359;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:23,29,0:52:99:743,0,600,812,686,1497:10,13,12,17 +chrX 1471765 . T . . END=1471939 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,104,1584 +chrX 1471940 . C T, 747.64 . AS_QUALapprox=|755|0;AS_VarDP=25|28|0;BaseQRankSum=1.591;DP=56;MQRankSum=0.000;QUALapprox=755;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=0.330;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:25,28,0:53:99:755,0,580,829,664,1493:15,10,12,16 +chrX 1471941 . G . . END=1472110 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,101,1584 +chrX 1472111 . C T, 765.64 . AS_QUALapprox=|773|0;AS_VarDP=26|29|0;BaseQRankSum=-0.080;DP=57;MQRankSum=0.000;QUALapprox=773;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=1.180;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:26,29,0:55:99:773,0,678,851,766,1616:14,12,18,11 +chrX 1472112 . G . . END=1472262 GT:DP:GQ:MIN_DP:PL 0/0:61:94:61:0,94,1658 +chrX 1472263 . C T, 1068.64 . AS_QUALapprox=|1076|0;AS_VarDP=23|28|0;BaseQRankSum=0.205;DP=64;MQRankSum=0.000;QUALapprox=1076;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=2.366;VarDP=51 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,28,0:51:99:0|1:1472263_C_T:1076,0,829,1145,913,2059:1472263:7,16,13,15 +chrX 1472264 . G . . END=1472275 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,120,1549 +chrX 1472276 . AAG A, 1153.60 . AS_QUALapprox=|1161|0;AS_VarDP=21|30|0;BaseQRankSum=-0.619;DP=62;MQRankSum=0.000;QUALapprox=1161;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=0.448;VarDP=51 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,30,0:51:99:0|1:1472263_C_T:1161,0,773,1224,863,2087:1472263:7,14,14,16 +chrX 1472279 . A . . END=1472313 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,115,1588 +chrX 1472314 . A G, 845.64 . AS_QUALapprox=|853|0;AS_VarDP=19|30|0;BaseQRankSum=-0.880;DP=62;MQRankSum=0.000;QUALapprox=853;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=-2.135;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:19,30,0:49:99:853,0,500,910,590,1500:7,12,13,17 +chrX 1472315 . A . . END=1472355 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,112,1266 +chrX 1472356 . A G, 659.64 . AS_QUALapprox=|667|0;AS_VarDP=19|25|0;BaseQRankSum=-1.268;DP=59;MQRankSum=-0.826;QUALapprox=667;RAW_GT_COUNT=0,1,0;RAW_MQandDP=207250,59;ReadPosRankSum=1.055;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:19,25,0:44:99:667,0,493,724,569,1292:8,11,10,15 +chrX 1472357 . T . . END=1472453 GT:DP:GQ:MIN_DP:PL 0/0:32:36:20:0,36,620 +chrX 1472454 . G A, 289.64 . AS_QUALapprox=|297|0;AS_VarDP=9|11|0;BaseQRankSum=0.146;DP=30;MQRankSum=0.000;QUALapprox=297;RAW_GT_COUNT=0,1,0;RAW_MQandDP=108000,30;ReadPosRankSum=-2.740;VarDP=20 GT:AD:DP:GQ:PL:SB 0/1:9,11,0:20:99:297,0,243,325,276,600:5,4,4,7 +chrX 1472455 . A . . END=1472464 GT:DP:GQ:MIN_DP:PL 0/0:25:47:25:0,47,735 +chrX 1472465 . T . . END=1472465 GT:DP:GQ:MIN_DP:PL 0/0:23:15:23:0,15,601 +chrX 1472466 . G . . END=1472472 GT:DP:GQ:MIN_DP:PL 0/0:23:21:20:0,21,566 +chrX 1472473 . T . . END=1472473 GT:DP:GQ:MIN_DP:PL 0/0:22:17:22:0,17,586 +chrX 1472474 . G . . END=1472476 GT:DP:GQ:MIN_DP:PL 0/0:24:37:24:0,37,704 +chrX 1472477 . C . . END=1472477 GT:DP:GQ:MIN_DP:PL 0/0:21:14:21:0,14,540 +chrX 1472478 . A . . END=1472479 GT:DP:GQ:MIN_DP:PL 0/0:22:52:22:0,52,665 +chrX 1472480 . A . . END=1472480 GT:DP:GQ:MIN_DP:PL 0/0:20:11:20:0,11,526 +chrX 1472481 . T . . END=1472492 GT:DP:GQ:MIN_DP:PL 0/0:20:29:18:0,29,526 +chrX 1472493 . T . . END=1472493 GT:DP:GQ:MIN_DP:PL 0/0:20:0:20:0,0,428 +chrX 1472494 . G . . END=1472495 GT:DP:GQ:MIN_DP:PL 0/0:21:45:21:0,45,675 +chrX 1472496 . A . . END=1472497 GT:DP:GQ:MIN_DP:PL 0/0:19:0:19:0,0,452 +chrX 1472498 . G . . END=1472500 GT:DP:GQ:MIN_DP:PL 0/0:21:48:21:0,48,720 +chrX 1472501 . T . . END=1472501 GT:DP:GQ:MIN_DP:PL 0/0:20:0:20:0,0,467 +chrX 1472502 . G . . END=1472503 GT:DP:GQ:MIN_DP:PL 0/0:21:51:21:0,51,765 +chrX 1472504 . A . . END=1472505 GT:DP:GQ:MIN_DP:PL 0/0:19:0:19:0,0,457 +chrX 1472506 . G . . END=1472508 GT:DP:GQ:MIN_DP:PL 0/0:23:48:23:0,48,720 +chrX 1472509 . T . . END=1472509 GT:DP:GQ:MIN_DP:PL 0/0:20:0:20:0,0,487 +chrX 1472510 . G . . END=1472512 GT:DP:GQ:MIN_DP:PL 0/0:22:48:22:0,48,720 +chrX 1472513 . T . . END=1472513 GT:DP:GQ:MIN_DP:PL 0/0:18:19:18:0,19,465 +chrX 1472514 . G . . END=1472516 GT:DP:GQ:MIN_DP:PL 0/0:22:28:21:0,28,580 +chrX 1472517 . T . . END=1472517 GT:DP:GQ:MIN_DP:PL 0/0:17:0:17:0,0,372 +chrX 1472518 . G . . END=1472520 GT:DP:GQ:MIN_DP:PL 0/0:21:28:21:0,28,590 +chrX 1472521 . A . . END=1472521 GT:DP:GQ:MIN_DP:PL 0/0:18:0:18:0,0,131 +chrX 1472522 . G . . END=1472524 GT:DP:GQ:MIN_DP:PL 0/0:20:25:16:0,25,515 +chrX 1472525 . T . . END=1472525 GT:DP:GQ:MIN_DP:PL 0/0:17:12:17:0,12,432 +chrX 1472526 . G . . END=1472532 GT:DP:GQ:MIN_DP:PL 0/0:22:22:19:0,22,470 +chrX 1472533 . C . . END=1472533 GT:DP:GQ:MIN_DP:PL 0/0:18:0:18:0,0,346 +chrX 1472534 . G . . END=1472535 GT:DP:GQ:MIN_DP:PL 0/0:24:60:24:0,60,900 +chrX 1472536 . A . . END=1472536 GT:DP:GQ:MIN_DP:PL 0/0:26:18:26:0,18,633 +chrX 1472537 . T . . END=1472539 GT:DP:GQ:MIN_DP:PL 0/0:25:26:25:0,26,629 +chrX 1472540 . A . . END=1472540 GT:DP:GQ:MIN_DP:PL 0/0:23:5:23:0,5,561 +chrX 1472541 . T . . END=1472557 GT:DP:GQ:MIN_DP:PL 0/0:25:23:23:0,23,645 +chrX 1472558 . A . . END=1472558 GT:DP:GQ:MIN_DP:PL 0/0:25:0:25:0,0,518 +chrX 1472559 . A . . END=1472568 GT:DP:GQ:MIN_DP:PL 0/0:26:40:26:0,40,678 +chrX 1472569 . A . . END=1472569 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,684 +chrX 1472570 . G . . END=1472601 GT:DP:GQ:MIN_DP:PL 0/0:29:43:29:0,43,784 +chrX 1472602 . TTTAGA T, 247.60 . AS_QUALapprox=|255|0;AS_VarDP=13|7|0;BaseQRankSum=0.200;DP=24;MQRankSum=-1.258;QUALapprox=255;RAW_GT_COUNT=0,1,0;RAW_MQandDP=84985,24;ReadPosRankSum=2.072;VarDP=20 GT:AD:DP:GQ:PL:SB 0/1:13,7,0:20:99:255,0,525,294,546,840:5,8,3,4 +chrX 1472608 . T . . END=1472693 GT:DP:GQ:MIN_DP:PL 0/0:20:21:16:0,21,477 +chrX 1472694 . GGGAGGGTGGATGTGTGGATGAAT G, 158.60 . AS_QUALapprox=|166|0;AS_VarDP=19|6|0;BaseQRankSum=0.961;DP=36;MQRankSum=0.000;QUALapprox=166;RAW_GT_COUNT=0,1,0;RAW_MQandDP=129600,36;ReadPosRankSum=-0.627;VarDP=25 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:19,6,0:25:99:0|1:1472694_GGGAGGGTGGATGTGTGGATGAAT_G:166,0,678,223,697,919:1472694:13,6,5,1 +chrX 1472718 . G . . END=1472727 GT:DP:GQ:MIN_DP:PL 0/0:20:25:17:0,25,457 +chrX 1472728 . T A, 152.64 . AS_QUALapprox=|160|0;AS_VarDP=10|5|0;BaseQRankSum=1.035;DP=28;MQRankSum=0.000;QUALapprox=160;RAW_GT_COUNT=0,1,0;RAW_MQandDP=100800,28;ReadPosRankSum=0.245;VarDP=15 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:10,5,0:15:99:0|1:1472694_GGGAGGGTGGATGTGTGGATGAAT_G:160,0,384,191,400,591:1472694:7,3,4,1 +chrX 1472729 . G . . END=1472804 GT:DP:GQ:MIN_DP:PL 0/0:38:47:38:0,47,913 +chrX 1472805 . A . . END=1472805 GT:DP:GQ:MIN_DP:PL 0/0:42:3:42:0,3,1033 +chrX 1472806 . G . . END=1472857 GT:DP:GQ:MIN_DP:PL 0/0:50:65:50:0,65,1170 +chrX 1472858 . A G, 350.64 . AS_QUALapprox=|358|0;AS_VarDP=20|16|0;BaseQRankSum=-1.281;DP=41;MQRankSum=-0.160;QUALapprox=358;RAW_GT_COUNT=0,1,0;RAW_MQandDP=144378,41;ReadPosRankSum=0.685;VarDP=36 GT:AD:DP:GQ:PL:SB 0/1:20,16,0:36:99:358,0,547,418,594,1012:11,9,6,10 +chrX 1472859 . G . . END=1472932 GT:DP:GQ:MIN_DP:PL 0/0:31:48:31:0,48,839 +chrX 1472933 . C T, 379.64 . AS_QUALapprox=|387|0;AS_VarDP=11|17|0;BaseQRankSum=-0.165;DP=33;MQRankSum=0.000;QUALapprox=387;RAW_GT_COUNT=0,1,0;RAW_MQandDP=118800,33;ReadPosRankSum=-0.165;VarDP=28 GT:AD:DP:GQ:PL:SB 0/1:11,17,0:28:99:387,0,268,420,314,734:9,2,12,5 +chrX 1472934 . G . . END=1472938 GT:DP:GQ:MIN_DP:PL 0/0:34:53:34:0,53,991 +chrX 1472939 . A . . END=1472939 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,723 +chrX 1472940 . G . . END=1472950 GT:DP:GQ:MIN_DP:PL 0/0:37:30:36:0,30,962 +chrX 1472951 . C . . END=1472953 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,782 +chrX 1472954 . G . . END=1472956 GT:DP:GQ:MIN_DP:PL 0/0:38:79:38:0,79,1181 +chrX 1472957 . T . . END=1472957 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,863 +chrX 1472958 . G . . END=1472963 GT:DP:GQ:MIN_DP:PL 0/0:38:37:32:0,37,903 +chrX 1472964 . A . . END=1472965 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,794 +chrX 1472966 . G . . END=1472968 GT:DP:GQ:MIN_DP:PL 0/0:39:68:39:0,68,1167 +chrX 1472969 . T . . END=1472969 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,867 +chrX 1472970 . G . . END=1472972 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,105,1575 +chrX 1472973 . T . . END=1472973 GT:DP:GQ:MIN_DP:PL 0/0:37:7:37:0,7,937 +chrX 1472974 . G . . END=1472975 GT:DP:GQ:MIN_DP:PL 0/0:42:88:42:0,88,1253 +chrX 1472976 . A . . END=1472977 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,799 +chrX 1472978 . G . . END=1472979 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,105,1575 +chrX 1472980 . A . . END=1472981 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,709 +chrX 1472982 . G . . END=1472986 GT:DP:GQ:MIN_DP:PL 0/0:42:91:42:0,91,1280 +chrX 1472987 . T . . END=1472987 GT:DP:GQ:MIN_DP:PL 0/0:27:0:27:0,0,470 +chrX 1472988 . G . . END=1472990 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,114,1195 +chrX 1472991 . T . . END=1472991 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,583 +chrX 1472992 . G . . END=1472994 GT:DP:GQ:MIN_DP:PL 0/0:41:76:41:0,76,1086 +chrX 1472995 . A . . END=1472995 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,455 +chrX 1472996 . G . . END=1472998 GT:DP:GQ:MIN_DP:PL 0/0:36:39:33:0,39,887 +chrX 1472999 . T . . END=1472999 GT:DP:GQ:MIN_DP:PL 0/0:32:7:32:0,7,683 +chrX 1473000 . G . . END=1473025 GT:DP:GQ:MIN_DP:PL 0/0:42:45:42:0,45,1074 +chrX 1473026 . T . . END=1473026 GT:DP:GQ:MIN_DP:PL 0/0:45:16:45:0,16,1104 +chrX 1473027 . T . . END=1473039 GT:DP:GQ:MIN_DP:PL 0/0:48:56:48:0,56,1187 +chrX 1473040 . A . . END=1473040 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,1005 +chrX 1473041 . G . . END=1473070 GT:DP:GQ:MIN_DP:PL 0/0:55:38:55:0,38,1223 +chrX 1473071 . T . . END=1473072 GT:DP:GQ:MIN_DP:PL 0/0:53:0:53:0,0,1188 +chrX 1473073 . G . . END=1473083 GT:DP:GQ:MIN_DP:PL 0/0:51:46:51:0,46,1342 +chrX 1473084 . A . . END=1473085 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,1051 +chrX 1473086 . T . . END=1473089 GT:DP:GQ:MIN_DP:PL 0/0:49:88:49:0,88,1398 +chrX 1473090 . A . . END=1473090 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,918 +chrX 1473091 . G . . END=1473128 GT:DP:GQ:MIN_DP:PL 0/0:46:23:44:0,23,1120 +chrX 1473129 . A . . END=1473129 GT:DP:GQ:MIN_DP:PL 0/0:55:7:55:0,7,1343 +chrX 1473130 . T . . END=1473132 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 1473133 . G GTGGA, 656.60 . AS_QUALapprox=|664|0;AS_VarDP=18|18|0;BaseQRankSum=0.456;DP=44;MQRankSum=1.056;QUALapprox=664;RAW_GT_COUNT=0,1,0;RAW_MQandDP=152602,44;ReadPosRankSum=-0.443;VarDP=36 GT:AD:DP:GQ:PL:SB 0/1:18,18,0:36:99:664,0,652,719,706,1425:9,9,10,8 +chrX 1473134 . T . . END=1473148 GT:DP:GQ:MIN_DP:PL 0/0:59:22:58:0,22,1485 +chrX 1473149 . G . . END=1473149 GT:DP:GQ:MIN_DP:PL 0/0:60:17:60:0,17,1688 +chrX 1473150 . T . . END=1473154 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,101,1671 +chrX 1473155 . G . . END=1473156 GT:DP:GQ:MIN_DP:PL 0/0:59:0:59:0,0,1548 +chrX 1473157 . A . . END=1473206 GT:DP:GQ:MIN_DP:PL 0/0:62:47:62:0,47,1584 +chrX 1473207 . A . . END=1473207 GT:DP:GQ:MIN_DP:PL 0/0:61:0:61:0,0,1502 +chrX 1473208 . G . . END=1473208 GT:DP:GQ:MIN_DP:PL 0/0:61:30:61:0,30,1702 +chrX 1473209 . A . . END=1473209 GT:DP:GQ:MIN_DP:PL 0/0:58:10:58:0,10,1558 +chrX 1473210 . T . . END=1473214 GT:DP:GQ:MIN_DP:PL 0/0:59:55:59:0,55,1678 +chrX 1473215 . A . . END=1473215 GT:DP:GQ:MIN_DP:PL 0/0:61:9:61:0,9,1591 +chrX 1473216 . G . . END=1473247 GT:DP:GQ:MIN_DP:PL 0/0:60:57:60:0,57,1703 +chrX 1473248 . C . . END=1473248 GT:DP:GQ:MIN_DP:PL 0/0:52:0:52:0,0,1201 +chrX 1473249 . G . . END=1473253 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 1473254 . C . . END=1473254 GT:DP:GQ:MIN_DP:PL 0/0:51:14:51:0,14,1293 +chrX 1473255 . G . . END=1473289 GT:DP:GQ:MIN_DP:PL 0/0:54:58:54:0,58,1261 +chrX 1473290 . G . . END=1473290 GT:DP:GQ:MIN_DP:PL 0/0:50:11:50:0,11,1349 +chrX 1473291 . G . . END=1473292 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 1473293 . T . . END=1473293 GT:DP:GQ:MIN_DP:PL 0/0:49:7:49:0,7,1143 +chrX 1473294 . T . . END=1473318 GT:DP:GQ:MIN_DP:PL 0/0:42:31:38:0,31,935 +chrX 1473319 . T . . END=1473319 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,979 +chrX 1473320 . G . . END=1473325 GT:DP:GQ:MIN_DP:PL 0/0:43:62:43:0,62,1120 +chrX 1473326 . A . . END=1473326 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,1032 +chrX 1473327 . T . . END=1473332 GT:DP:GQ:MIN_DP:PL 0/0:43:41:43:0,41,1085 +chrX 1473333 . C . . END=1473334 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,845 +chrX 1473335 . T . . END=1473359 GT:DP:GQ:MIN_DP:PL 0/0:39:37:37:0,37,1057 +chrX 1473360 . T . . END=1473360 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,933 +chrX 1473361 . C . . END=1473363 GT:DP:GQ:MIN_DP:PL 0/0:35:31:34:0,31,917 +chrX 1473364 . A . . END=1473376 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,546 +chrX 1473377 . GTGGGTGGGTGGA G, 470.60 . AS_QUALapprox=|478|0;AS_VarDP=8|12|0;BaseQRankSum=0.396;DP=30;MQRankSum=0.000;QUALapprox=478;RAW_GT_COUNT=0,1,0;RAW_MQandDP=108000,30;ReadPosRankSum=1.268;VarDP=20 GT:AD:DP:GQ:PL:SB 0/1:8,12,0:20:99:478,0,248,500,285,785:6,2,6,6 +chrX 1473389 . A *,G, 222.04 . AS_QUALapprox=|0|278|0;AS_VarDP=1|12|7|0;BaseQRankSum=-0.157;DP=26;MQRankSum=0.000;QUALapprox=757;RAW_GT_COUNT=0,0,1;RAW_MQandDP=93600,26;ReadPosRankSum=1.562;VarDP=20 GT:AD:DP:GQ:PL:SB 1/2:1,12,7,0:20:99:757,232,247,505,0,479,752,264,506,771:0,1,12,7 +chrX 1473390 . T . . END=1473437 GT:DP:GQ:MIN_DP:PL 0/0:22:28:21:0,28,630 +chrX 1473438 . T C, 324.64 . AS_QUALapprox=|332|0;AS_VarDP=11|14|0;BaseQRankSum=0.000;DP=27;MQRankSum=0.000;QUALapprox=332;RAW_GT_COUNT=0,1,0;RAW_MQandDP=97200,27;ReadPosRankSum=-0.904;VarDP=25 GT:AD:DP:GQ:PL:SB 0/1:11,14,0:25:99:332,0,239,364,280,644:8,3,7,7 +chrX 1473439 . G . . END=1473475 GT:DP:GQ:MIN_DP:PL 0/0:38:57:38:0,57,987 +chrX 1473476 . T . . END=1473476 GT:DP:GQ:MIN_DP:PL 0/0:37:8:37:0,8,919 +chrX 1473477 . A . . END=1473515 GT:DP:GQ:MIN_DP:PL 0/0:34:28:26:0,28,633 +chrX 1473516 . C . . END=1473516 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,703 +chrX 1473517 . A . . END=1473524 GT:DP:GQ:MIN_DP:PL 0/0:39:55:39:0,55,901 +chrX 1473525 . GTGGA G, 552.60 . AS_QUALapprox=|560|0;AS_VarDP=12|16|0;BaseQRankSum=-0.027;DP=32;MQRankSum=0.312;QUALapprox=560;RAW_GT_COUNT=0,1,0;RAW_MQandDP=111341,32;ReadPosRankSum=0.232;VarDP=28 GT:AD:DP:GQ:PL:SB 0/1:12,16,0:28:99:560,0,445,596,493,1089:3,9,8,8 +chrX 1473530 . T . . END=1473590 GT:DP:GQ:MIN_DP:PL 0/0:57:32:54:0,32,824 +chrX 1473591 . A . . END=1473591 GT:DP:GQ:MIN_DP:PL 0/0:53:15:53:0,15,1323 +chrX 1473592 . A . . END=1473601 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,105,1429 +chrX 1473602 . T G, 21.64 . AS_QUALapprox=|29|0;AS_VarDP=46|4|0;BaseQRankSum=-0.051;DP=51;MQRankSum=-4.166;QUALapprox=29;RAW_GT_COUNT=0,1,0;RAW_MQandDP=163663,51;ReadPosRankSum=1.045;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:46,4,0:50:29:0|1:1473602_T_G:29,0,1919,168,1932,2099:1473602:16,30,3,1 +chrX 1473603 . G . . END=1473606 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 1473607 . G A, 12.63 . AS_QUALapprox=|20|0;AS_VarDP=49|4|0;BaseQRankSum=-0.731;DP=54;MQRankSum=-4.326;QUALapprox=20;RAW_GT_COUNT=0,1,0;RAW_MQandDP=174463,54;ReadPosRankSum=1.533;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:49,4,0:53:20:0|1:1473602_T_G:20,0,2045,168,2058,2225:1473602:17,32,3,1 +chrX 1473608 . A . . END=1473610 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 1473611 . A C, 1.22 . AS_QUALapprox=|8|0;AS_VarDP=53|4|0;BaseQRankSum=-0.750;DP=58;MQRankSum=-4.337;QUALapprox=8;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187288,58;ReadPosRankSum=1.817;VarDP=57 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:53,4,0:57:8:0|1:1473602_T_G:8,0,2213,168,2225,2393:1473602:20,33,3,1 +chrX 1473612 . G . . END=1473618 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 1473619 . G A, 6.61 . AS_QUALapprox=|14|0;AS_VarDP=51|4|0;BaseQRankSum=-2.112;DP=56;MQRankSum=-4.242;QUALapprox=14;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180088,56;ReadPosRankSum=1.804;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:51,4,0:55:14:0|1:1473602_T_G:14,0,2129,168,2141,2309:1473602:19,32,3,1 +chrX 1473620 . A . . END=1473628 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 1473629 . T C, 6.61 . AS_QUALapprox=|14|0;AS_VarDP=51|4|0;BaseQRankSum=-0.153;DP=56;MQRankSum=-4.630;QUALapprox=14;RAW_GT_COUNT=0,1,0;RAW_MQandDP=182904,56;ReadPosRankSum=1.566;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:51,4,0:55:14:0|1:1473602_T_G:14,0,2129,168,2141,2309:1473602:19,32,3,1 +chrX 1473630 . G . . END=1473645 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 1473646 . G T, 21.64 . AS_QUALapprox=|29|0;AS_VarDP=46|4|0;BaseQRankSum=1.252;DP=50;MQRankSum=-4.597;QUALapprox=29;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162404,50;ReadPosRankSum=0.822;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:46,4,0:50:29:0|1:1473602_T_G:29,0,1919,168,1932,2099:1473602:20,26,3,1 +chrX 1473647 . G . . END=1473649 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 1473650 . G C, 25.64 . AS_QUALapprox=|33|0;AS_VarDP=45|4|0;BaseQRankSum=0.157;DP=49;MQRankSum=-4.541;QUALapprox=33;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158804,49;ReadPosRankSum=0.475;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:45,4,0:49:33:0|1:1473602_T_G:33,0,1878,168,1890,2058:1473602:20,25,3,1 +chrX 1473651 . G . . END=1473651 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,118,1464 +chrX 1473652 . A G, 25.64 . AS_QUALapprox=|33|0;AS_VarDP=45|4|0;BaseQRankSum=1.333;DP=50;MQRankSum=-4.541;QUALapprox=33;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162404,50;ReadPosRankSum=0.280;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:45,4,0:49:33:0|1:1473602_T_G:33,0,1878,168,1890,2058:1473602:20,25,3,1 +chrX 1473653 . T . . END=1473712 GT:DP:GQ:MIN_DP:PL 0/0:49:41:34:0,41,1097 +chrX 1473713 . T A, 476.64 . AS_QUALapprox=|484|0;AS_VarDP=15|17|0;BaseQRankSum=0.111;DP=33;MQRankSum=-0.877;QUALapprox=484;RAW_GT_COUNT=0,1,0;RAW_MQandDP=118009,33;ReadPosRankSum=-1.077;VarDP=32 GT:AD:DP:GQ:PL:SB 0/1:15,17,0:32:99:484,0,361,529,412,941:11,4,9,8 +chrX 1473714 . G . . END=1473768 GT:DP:GQ:MIN_DP:PL 0/0:33:60:33:0,60,878 +chrX 1473769 . A . . END=1473769 GT:DP:GQ:MIN_DP:PL 0/0:28:15:28:0,15,774 +chrX 1473770 . T . . END=1473814 GT:DP:GQ:MIN_DP:PL 0/0:29:49:29:0,49,695 +chrX 1473815 . AGTGGGTGG A, 663.60 . AS_QUALapprox=|671|0;AS_VarDP=25|18|0;BaseQRankSum=-0.558;DP=46;MQRankSum=-0.920;QUALapprox=671;RAW_GT_COUNT=0,1,0;RAW_MQandDP=157527,46;ReadPosRankSum=1.057;VarDP=43 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,18,0:43:99:0|1:1473815_AGTGGGTGG_A:671,0,995,746,1050,1796:1473815:15,10,9,9 +chrX 1473824 . G . . END=1473842 GT:DP:GQ:MIN_DP:PL 0/0:42:91:42:0,91,1132 +chrX 1473843 . G C, 776.64 . AS_QUALapprox=|784|0;AS_VarDP=29|21|0;BaseQRankSum=-1.032;DP=51;MQRankSum=-0.907;QUALapprox=784;RAW_GT_COUNT=0,1,0;RAW_MQandDP=177446,51;ReadPosRankSum=-1.042;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,21,0:50:99:0|1:1473815_AGTGGGTGG_A:784,0,1154,872,1218,2089:1473815:17,12,12,9 +chrX 1473844 . A . . END=1473869 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,120,1344 +chrX 1473870 . A G, 675.64 . AS_QUALapprox=|683|0;AS_VarDP=29|20|0;BaseQRankSum=-0.714;DP=52;MQRankSum=-0.954;QUALapprox=683;RAW_GT_COUNT=0,1,0;RAW_MQandDP=181046,52;ReadPosRankSum=-0.190;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:29,20,0:49:99:683,0,800,770,860,1629:17,12,11,9 +chrX 1473871 . T . . END=1473874 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 1473875 . G A, 690.64 . AS_QUALapprox=|698|0;AS_VarDP=33|19|0;BaseQRankSum=-1.276;DP=53;MQRankSum=-1.129;QUALapprox=698;RAW_GT_COUNT=0,1,0;RAW_MQandDP=184646,53;ReadPosRankSum=-0.628;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:33,19,0:52:99:0|1:1473815_AGTGGGTGG_A:698,0,1328,798,1386,2183:1473815:20,13,11,8 +chrX 1473876 . G . . END=1473908 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 1473909 . T G, 603.64 . AS_QUALapprox=|611|0;AS_VarDP=42|19|0;BaseQRankSum=0.683;DP=62;MQRankSum=0.310;QUALapprox=611;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208751,62;ReadPosRankSum=0.686;VarDP=61 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:42,19,0:61:99:0|1:1473815_AGTGGGTGG_A:611,0,1546,737,1604,2341:1473815:30,12,12,7 +chrX 1473910 . G . . END=1473983 GT:DP:GQ:MIN_DP:PL 0/0:84:47:84:0,47,1310 +chrX 1473984 . C T, 861.64 . AS_QUALapprox=|869|0;AS_VarDP=14|28|0;BaseQRankSum=-0.163;DP=49;MQRankSum=-0.030;QUALapprox=869;RAW_GT_COUNT=0,1,0;RAW_MQandDP=168435,49;ReadPosRankSum=0.440;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:14,28,0:42:99:869,0,305,911,389,1300:9,5,9,19 +chrX 1473985 . G . . END=1473997 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,109,1088 +chrX 1473998 . A G, 333.64 . AS_QUALapprox=|341|0;AS_VarDP=29|16|0;BaseQRankSum=-1.221;DP=52;MQRankSum=-1.705;QUALapprox=341;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176216,52;ReadPosRankSum=-0.296;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:29,16,0:45:99:341,0,964,429,1012,1441:14,15,5,11 +chrX 1473999 . G . . END=1474034 GT:DP:GQ:MIN_DP:PL 0/0:45:88:45:0,88,1268 +chrX 1474035 . G A, 400.64 . AS_QUALapprox=|408|0;AS_VarDP=32|12|0;BaseQRankSum=1.198;DP=47;MQRankSum=-1.413;QUALapprox=408;RAW_GT_COUNT=0,1,0;RAW_MQandDP=157282,47;ReadPosRankSum=2.307;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:32,12,0:44:99:408,0,1168,504,1204,1708:11,21,3,9 +chrX 1474036 . T . . END=1474043 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,120,1800 +chrX 1474044 . T C, 436.64 . AS_QUALapprox=|444|0;AS_VarDP=34|13|0;BaseQRankSum=1.042;DP=49;MQRankSum=-1.997;QUALapprox=444;RAW_GT_COUNT=0,1,0;RAW_MQandDP=164057,49;ReadPosRankSum=2.234;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:34,13,0:47:99:0|1:1474044_T_C:444,0,1388,546,1427,1973:1474044:13,21,3,10 +chrX 1474045 . G T, 436.64 . AS_QUALapprox=|444|0;AS_VarDP=34|13|0;BaseQRankSum=1.092;DP=49;MQRankSum=-1.997;QUALapprox=444;RAW_GT_COUNT=0,1,0;RAW_MQandDP=164057,49;ReadPosRankSum=1.796;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:34,13,0:47:99:0|1:1474044_T_C:444,0,1388,546,1427,1973:1474044:13,21,3,10 +chrX 1474046 . G . . END=1474050 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,117,1755 +chrX 1474051 . C T, 497.64 . AS_QUALapprox=|505|0;AS_VarDP=32|15|0;BaseQRankSum=1.802;DP=50;MQRankSum=-2.487;QUALapprox=505;RAW_GT_COUNT=0,1,0;RAW_MQandDP=167657,50;ReadPosRankSum=2.009;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:32,15,0:47:99:505,0,863,599,909,1508:14,18,3,12 +chrX 1474052 . G . . END=1474052 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 1474053 . G A, 430.64 . AS_QUALapprox=|438|0;AS_VarDP=36|13|0;BaseQRankSum=0.519;DP=51;MQRankSum=-2.084;QUALapprox=438;RAW_GT_COUNT=0,1,0;RAW_MQandDP=171257,51;ReadPosRankSum=1.989;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:36,13,0:49:99:0|1:1474044_T_C:438,0,1451,546,1490,2036:1474044:15,21,3,10 +chrX 1474054 . G . . END=1474092 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,101,1210 +chrX 1474093 . T G, 263.64 . AS_QUALapprox=|271|0;AS_VarDP=32|9|0;BaseQRankSum=1.539;DP=41;MQRankSum=-1.691;QUALapprox=271;RAW_GT_COUNT=0,1,0;RAW_MQandDP=132944,41;ReadPosRankSum=-0.898;VarDP=41 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:32,9,0:41:99:0|1:1474093_T_G:271,0,1317,368,1344,1711:1474093:18,14,3,6 +chrX 1474094 . A . . END=1474096 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,117,1755 +chrX 1474097 . G A, 260.64 . AS_QUALapprox=|268|0;AS_VarDP=33|9|0;BaseQRankSum=-0.256;DP=42;MQRankSum=-1.738;QUALapprox=268;RAW_GT_COUNT=0,1,0;RAW_MQandDP=136544,42;ReadPosRankSum=-0.576;VarDP=42 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:33,9,0:42:99:0|1:1474093_T_G:268,0,1359,368,1386,1753:1474093:19,14,3,6 +chrX 1474098 . A . . END=1474100 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,120,1320 +chrX 1474101 . A C, 226.64 . AS_QUALapprox=|234|0;AS_VarDP=34|8|0;BaseQRankSum=-1.275;DP=42;MQRankSum=-1.974;QUALapprox=234;RAW_GT_COUNT=0,1,0;RAW_MQandDP=136544,42;ReadPosRankSum=-0.938;VarDP=42 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:34,8,0:42:99:0|1:1474093_T_G:234,0,1404,336,1428,1764:1474093:20,14,2,6 +chrX 1474102 . G . . END=1474108 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,100,1346 +chrX 1474109 . G A, 265.64 . AS_QUALapprox=|273|0;AS_VarDP=35|9|0;BaseQRankSum=-1.886;DP=44;MQRankSum=-2.491;QUALapprox=273;RAW_GT_COUNT=0,1,0;RAW_MQandDP=141744,44;ReadPosRankSum=-2.016;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:35,9,0:44:99:0|1:1474093_T_G:273,0,1443,378,1470,1848:1474093:21,14,2,7 +chrX 1474110 . A . . END=1474118 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,120,1800 +chrX 1474119 . T C, 250.64 . AS_QUALapprox=|258|0;AS_VarDP=40|9|0;BaseQRankSum=0.230;DP=49;MQRankSum=-2.448;QUALapprox=258;RAW_GT_COUNT=0,1,0;RAW_MQandDP=157744,49;ReadPosRankSum=-1.863;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:40,9,0:49:99:0|1:1474093_T_G:258,0,1653,378,1680,2058:1474093:24,16,2,7 +chrX 1474120 . G . . END=1474135 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 1474136 . G T, 150.64 . AS_QUALapprox=|158|0;AS_VarDP=45|7|0;BaseQRankSum=-0.660;DP=52;MQRankSum=-2.373;QUALapprox=158;RAW_GT_COUNT=0,1,0;RAW_MQandDP=171183,52;ReadPosRankSum=-1.404;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:45,7,0:52:99:0|1:1474093_T_G:158,0,1868,294,1890,2183:1474093:26,19,1,6 +chrX 1474137 . G . . END=1474139 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,111,1665 +chrX 1474140 . G C, 147.64 . AS_QUALapprox=|155|0;AS_VarDP=46|7|0;BaseQRankSum=-0.441;DP=53;MQRankSum=-3.333;QUALapprox=155;RAW_GT_COUNT=0,1,0;RAW_MQandDP=171759,53;ReadPosRankSum=-1.143;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:46,7,0:53:99:0|1:1474093_T_G:155,0,1910,294,1932,2225:1474093:27,19,1,6 +chrX 1474141 . G . . END=1474165 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,105,1214 +chrX 1474166 . G A, 883.64 . AS_QUALapprox=|891|0;AS_VarDP=19|25|0;BaseQRankSum=0.443;DP=45;MQRankSum=-1.518;QUALapprox=891;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154976,45;ReadPosRankSum=1.482;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:19,25,0:44:99:0|1:1474166_G_A:891,0,702,948,777,1725:1474166:11,8,17,8 +chrX 1474167 . T . . END=1474169 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,101,1208 +chrX 1474170 . A . . END=1474170 GT:DP:GQ:MIN_DP:PL 0/0:47:3:47:0,3,1800 +chrX 1474171 . T . . END=1474173 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,114,1710 +chrX 1474174 . A . . END=1474174 GT:DP:GQ:MIN_DP:PL 0/0:47:3:47:0,3,1800 +chrX 1474175 . T . . END=1474177 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,114,1710 +chrX 1474178 . G T, 952.64 . AS_QUALapprox=|960|0;AS_VarDP=17|27|0;BaseQRankSum=-0.597;DP=46;MQRankSum=-1.379;QUALapprox=960;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158576,46;ReadPosRankSum=1.574;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:17,27,0:44:99:0|1:1474166_G_A:960,0,633,1012,714,1725:1474166:10,7,20,7 +chrX 1474179 . T . . END=1474183 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,105,1230 +chrX 1474184 . G A, 4.66 . AS_QUALapprox=|12|0;AS_VarDP=38|3|0;BaseQRankSum=-0.899;DP=43;MQRankSum=-6.265;QUALapprox=12;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147776,43;ReadPosRankSum=0.902;VarDP=41 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:38,3,0:41:12:0|1:1474093_T_G:12,0,1557,126,1566,1692:1474093:28,10,0,3 +chrX 1474185 . A T, 4.66 . AS_QUALapprox=|12|0;AS_VarDP=38|3|0;BaseQRankSum=-0.162;DP=43;MQRankSum=-6.265;QUALapprox=12;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147776,43;ReadPosRankSum=0.851;VarDP=41 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:38,3,0:41:12:0|1:1474093_T_G:12,0,1557,126,1566,1692:1474093:28,10,0,3 +chrX 1474186 . A . . END=1474252 GT:DP:GQ:MIN_DP:PL 0/0:60:27:59:0,27,1572 +chrX 1474253 . A . . END=1474253 GT:DP:GQ:MIN_DP:PL 0/0:56:10:56:0,10,1460 +chrX 1474254 . G . . END=1474370 GT:DP:GQ:MIN_DP:PL 0/0:29:28:26:0,28,704 +chrX 1474371 . ATAAGTGGGTGGG A, 67.60 . AS_QUALapprox=|75|0;AS_VarDP=17|3|0;BaseQRankSum=1.128;DP=20;MQRankSum=-1.242;QUALapprox=75;RAW_GT_COUNT=0,1,0;RAW_MQandDP=58207,20;ReadPosRankSum=-2.066;VarDP=20 GT:AD:DP:GQ:PL:SB 0/1:17,3,0:20:75:75,0,705,126,714,840:7,10,1,2 +chrX 1474384 . T . . END=1474396 GT:DP:GQ:MIN_DP:PL 0/0:23:41:23:0,41,659 +chrX 1474397 . C . . END=1474397 GT:DP:GQ:MIN_DP:PL 0/0:21:14:21:0,14,530 +chrX 1474398 . A . . END=1474410 GT:DP:GQ:MIN_DP:PL 0/0:23:21:20:0,21,516 +chrX 1474411 . A . . END=1474411 GT:DP:GQ:MIN_DP:PL 0/0:26:4:26:0,4,644 +chrX 1474412 . T . . END=1474415 GT:DP:GQ:MIN_DP:PL 0/0:29:78:29:0,78,843 +chrX 1474416 . C . . END=1474416 GT:DP:GQ:MIN_DP:PL 0/0:24:0:24:0,0,516 +chrX 1474417 . G . . END=1474421 GT:DP:GQ:MIN_DP:PL 0/0:28:23:24:0,23,635 +chrX 1474422 . A . . END=1474422 GT:DP:GQ:MIN_DP:PL 0/0:27:0:27:0,0,553 +chrX 1474423 . G . . END=1474473 GT:DP:GQ:MIN_DP:PL 0/0:27:42:27:0,42,723 +chrX 1474474 . T . . END=1474474 GT:DP:GQ:MIN_DP:PL 0/0:29:3:29:0,3,709 +chrX 1474475 . A . . END=1474475 GT:DP:GQ:MIN_DP:PL 0/0:29:81:29:0,81,1215 +chrX 1474476 . T . . END=1474476 GT:DP:GQ:MIN_DP:PL 0/0:29:18:29:0,18,769 +chrX 1474477 . G . . END=1474509 GT:DP:GQ:MIN_DP:PL 0/0:28:32:27:0,32,749 +chrX 1474510 . A G, 145.64 . AS_QUALapprox=|153|0;AS_VarDP=15|7|0;BaseQRankSum=0.767;DP=26;MQRankSum=0.118;QUALapprox=153;RAW_GT_COUNT=0,1,0;RAW_MQandDP=80733,26;ReadPosRankSum=-2.045;VarDP=22 GT:AD:DP:GQ:PL:SB 0/1:15,7,0:22:99:153,0,388,198,408,606:8,7,1,6 +chrX 1474511 . G . . END=1474555 GT:DP:GQ:MIN_DP:PL 0/0:24:49:24:0,49,545 +chrX 1474556 . GTGGATGGA G,GTGGA, 603.02 . AS_QUALapprox=|227|373|0;AS_VarDP=2|9|13|0;BaseQRankSum=-0.454;DP=32;MQRankSum=-0.151;QUALapprox=620;RAW_GT_COUNT=0,0,1;RAW_MQandDP=107340,32;ReadPosRankSum=-0.052;VarDP=24 GT:AD:DP:GQ:PL:SB 1/2:2,9,13,0:24:99:620,393,638,247,0,360,677,565,361,872:2,0,11,11 +chrX 1474565 . T . . END=1474607 GT:DP:GQ:MIN_DP:PL 0/0:35:33:30:0,33,892 +chrX 1474608 . A . . END=1474608 GT:DP:GQ:MIN_DP:PL 0/0:53:0:53:0,0,1333 +chrX 1474609 . T . . END=1474609 GT:DP:GQ:MIN_DP:PL 0/0:53:55:53:0,55,1482 +chrX 1474610 . A . . END=1474610 GT:DP:GQ:MIN_DP:PL 0/0:52:0:52:0,0,1219 +chrX 1474611 . A . . END=1475111 GT:DP:GQ:MIN_DP:PL 0/0:47:22:39:0,22,1093 +chrX 1475112 . T . . END=1475112 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,804 +chrX 1475113 . G . . END=1475115 GT:DP:GQ:MIN_DP:PL 0/0:39:96:39:0,96,1440 +chrX 1475116 . T . . END=1475116 GT:DP:GQ:MIN_DP:PL 0/0:36:19:36:0,19,833 +chrX 1475117 . G . . END=1475156 GT:DP:GQ:MIN_DP:PL 0/0:40:47:40:0,47,967 +chrX 1475157 . T G, 646.64 . AS_QUALapprox=|654|0;AS_VarDP=20|17|0;BaseQRankSum=2.019;DP=39;MQRankSum=-0.773;QUALapprox=654;RAW_GT_COUNT=0,1,0;RAW_MQandDP=131958,39;ReadPosRankSum=-0.335;VarDP=37 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:20,17,0:37:99:0|1:1475157_T_G:654,0,751,714,802,1516:1475157:11,9,9,8 +chrX 1475158 . T . . END=1475158 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,108,1620 +chrX 1475159 . A G, 646.64 . AS_QUALapprox=|654|0;AS_VarDP=20|17|0;BaseQRankSum=0.998;DP=38;MQRankSum=-0.773;QUALapprox=654;RAW_GT_COUNT=0,1,0;RAW_MQandDP=128358,38;ReadPosRankSum=-0.381;VarDP=37 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:20,17,0:37:99:0|1:1475157_T_G:654,0,751,714,802,1516:1475157:11,9,9,8 +chrX 1475160 . T . . END=1475244 GT:DP:GQ:MIN_DP:PL 0/0:43:52:43:0,52,1082 +chrX 1475245 . A . . END=1475245 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,1000 +chrX 1475246 . G . . END=1475358 GT:DP:GQ:MIN_DP:PL 0/0:54:62:54:0,62,1134 +chrX 1475359 . G A, 817.64 . AS_QUALapprox=|825|0;AS_VarDP=26|30|0;BaseQRankSum=0.321;DP=58;MQRankSum=0.000;QUALapprox=825;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-0.271;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:26,30,0:56:99:825,0,671,903,761,1663:13,13,14,16 +chrX 1475360 . A . . END=1475712 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,104,1564 +chrX 1475713 . T A, 1017.64 . AS_QUALapprox=|1025|0;AS_VarDP=30|37|0;BaseQRankSum=-0.080;DP=69;MQRankSum=0.000;QUALapprox=1025;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=0.618;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:30,37,0:67:99:1025,0,767,1114,878,1992:16,14,15,22 +chrX 1475714 . G . . END=1475808 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1475809 . A C, 771.64 . AS_QUALapprox=|779|0;AS_VarDP=31|30|0;BaseQRankSum=-1.700;DP=63;MQRankSum=0.000;QUALapprox=779;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=0.253;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:31,30,0:61:99:779,0,863,872,953,1825:18,13,16,14 +chrX 1475810 . G . . END=1476511 GT:DP:GQ:MIN_DP:PL 0/0:56:93:56:0,93,1320 +chrX 1476512 . C G, 1635.06 . AS_QUALapprox=|1649|0;AS_VarDP=0|51|0;DP=52;QUALapprox=1649;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1649,153,0,1649,153,1649:0,0,28,23 +chrX 1476513 . G . . END=1476591 GT:DP:GQ:MIN_DP:PL 0/0:51:96:51:0,96,1263 +chrX 1476592 . GA G,AA, 429.60 . AS_QUALapprox=|437|0|0;AS_VarDP=21|20|3|0;BaseQRankSum=1.521;DP=53;MQRankSum=0.000;QUALapprox=437;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=-0.317;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:21,20,3,0:44:99:437,0,461,485,408,1394,560,521,1213,1253:7,14,8,15 +chrX 1476594 . A . . END=1476630 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 1476631 . T A, 614.64 . AS_QUALapprox=|622|0;AS_VarDP=34|25|0;BaseQRankSum=-1.243;DP=60;MQRankSum=0.000;QUALapprox=622;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=-0.100;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:34,25,0:59:99:622,0,971,724,1045,1769:16,18,12,13 +chrX 1476632 . G . . END=1477188 GT:DP:GQ:MIN_DP:PL 0/0:62:94:62:0,94,1543 +chrX 1477189 . A . . END=1477191 GT:DP:GQ:MIN_DP:PL 0/0:60:0:60:0,0,1519 +chrX 1477192 . A . . END=1477197 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 1477198 . A AG, 793.60 . AS_QUALapprox=|801|0;AS_VarDP=34|22|0;BaseQRankSum=0.670;DP=70;MQRankSum=0.841;QUALapprox=801;RAW_GT_COUNT=0,1,0;RAW_MQandDP=250000,70;ReadPosRankSum=2.786;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:34,22,0:56:99:801,0,1196,903,1262,2165:21,13,8,14 +chrX 1477199 . A AAG,AAAGAAG, 1149.60 . AS_QUALapprox=|1157|260|0;AS_VarDP=24|22|0|0;BaseQRankSum=-0.985;DP=70;MQRankSum=0.000;QUALapprox=1157;RAW_GT_COUNT=0,1,0;RAW_MQandDP=250000,70;ReadPosRankSum=2.146;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:24,22,0,0:46:99:1157,0,1172,897,982,2009,1112,1155,1996,2265:14,10,8,14 +chrX 1477200 . A . . END=1477283 GT:DP:GQ:MIN_DP:PL 0/0:68:42:68:0,42,1800 +chrX 1477284 . A . . END=1477287 GT:DP:GQ:MIN_DP:PL 0/0:65:0:65:0,0,1657 +chrX 1477288 . T . . END=1477288 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 1477289 . C . . END=1477289 GT:DP:GQ:MIN_DP:PL 0/0:64:0:64:0,0,1667 +chrX 1477290 . T . . END=1477290 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 1477291 . A . . END=1477293 GT:DP:GQ:MIN_DP:PL 0/0:65:0:65:0,0,1560 +chrX 1477294 . T . . END=1477294 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 1477295 . A . . END=1477297 GT:DP:GQ:MIN_DP:PL 0/0:64:0:64:0,0,1628 +chrX 1477298 . T TCAATCATCTATCAATCAGA, 1110.60 . AS_QUALapprox=|1118|0;AS_VarDP=26|29|0;BaseQRankSum=-1.374;DP=59;MQRankSum=0.000;QUALapprox=1118;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-0.632;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:26,29,0:55:99:1118,0,995,1197,1082,2279:14,12,15,14 +chrX 1477299 . C . . END=1477303 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1477304 . G . . END=1477304 GT:DP:GQ:MIN_DP:PL 0/0:62:0:62:0,0,1350 +chrX 1477305 . T . . END=1477307 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1477308 . T . . END=1477309 GT:DP:GQ:MIN_DP:PL 0/0:59:0:59:0,0,1264 +chrX 1477310 . C . . END=1477312 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1477313 . C . . END=1477313 GT:DP:GQ:MIN_DP:PL 0/0:61:0:61:0,0,1464 +chrX 1477314 . C . . END=1477314 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 1477315 . C . . END=1477318 GT:DP:GQ:MIN_DP:PL 0/0:62:0:62:0,0,1490 +chrX 1477319 . A . . END=1477319 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1477320 . T . . END=1477323 GT:DP:GQ:MIN_DP:PL 0/0:65:0:65:0,0,1582 +chrX 1477324 . T . . END=1477325 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 1477326 . A . . END=1477326 GT:DP:GQ:MIN_DP:PL 0/0:64:18:64:0,18,1746 +chrX 1477327 . T . . END=1477447 GT:DP:GQ:MIN_DP:PL 0/0:59:41:59:0,41,1728 +chrX 1477448 . T A, 664.64 . AS_QUALapprox=|672|0;AS_VarDP=34|25|0;BaseQRankSum=1.569;DP=62;MQRankSum=0.000;QUALapprox=672;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=0.545;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:34,25,0:59:99:672,0,924,774,1000,1773:17,17,14,11 +chrX 1477449 . C . . END=1477538 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1477539 . C T, 1013.64 . AS_QUALapprox=|1021|0;AS_VarDP=41|28|0;BaseQRankSum=-0.678;DP=73;MQRankSum=0.000;QUALapprox=1021;RAW_GT_COUNT=0,1,0;RAW_MQandDP=262800,73;ReadPosRankSum=1.214;VarDP=69 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:41,28,0:69:99:0|1:1477539_C_T:1021,0,1597,1145,1681,2826:1477539:20,21,14,14 +chrX 1477540 . G . . END=1477549 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 1477550 . A ATCG, 1082.60 . AS_QUALapprox=|1090|0;AS_VarDP=39|29|0;BaseQRankSum=-2.680;DP=72;MQRankSum=0.000;QUALapprox=1090;RAW_GT_COUNT=0,1,0;RAW_MQandDP=259200,72;ReadPosRankSum=1.737;VarDP=68 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:39,29,0:68:99:0|1:1477539_C_T:1090,0,1550,1207,1638,2845:1477539:18,21,14,15 +chrX 1477551 . T . . END=1477971 GT:DP:GQ:MIN_DP:PL 0/0:67:97:67:0,97,1549 +chrX 1477972 . C T, 1324.64 . AS_QUALapprox=|1332|0;AS_VarDP=27|47|0;BaseQRankSum=0.306;DP=78;MQRankSum=0.000;QUALapprox=1332;RAW_GT_COUNT=0,1,0;RAW_MQandDP=280800,78;ReadPosRankSum=0.545;VarDP=74 GT:AD:DP:GQ:PL:SB 0/1:27,47,0:74:99:1332,0,636,1412,778,2190:16,11,26,21 +chrX 1477973 . G . . END=1478049 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 1478050 . G A, 843.64 . AS_QUALapprox=|851|0;AS_VarDP=28|34|0;BaseQRankSum=-2.532;DP=64;MQRankSum=0.000;QUALapprox=851;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=0.481;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:28,34,0:62:99:851,0,760,935,861,1796:13,15,19,15 +chrX 1478051 . G . . END=1478248 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,105,1575 +chrX 1478249 . A G, 701.64 . AS_QUALapprox=|709|0;AS_VarDP=28|20|0;BaseQRankSum=-0.888;DP=50;MQRankSum=-2.068;QUALapprox=709;RAW_GT_COUNT=0,1,0;RAW_MQandDP=174881,50;ReadPosRankSum=0.241;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:28,20,0:48:99:709,0,1056,793,1115,1909:15,13,8,12 +chrX 1478250 . T . . END=1478272 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,100,1384 +chrX 1478273 . G GCA,GTGTGTGTGTGTGTGTGTGCA, 524.60 . AS_QUALapprox=|72|532|0;AS_VarDP=28|0|11|0;BaseQRankSum=1.339;DP=48;MQRankSum=-2.803;QUALapprox=532;RAW_GT_COUNT=0,1,0;RAW_MQandDP=167681,48;ReadPosRankSum=-0.219;VarDP=39 GT:AD:DP:GQ:PL:SB 0/2:28,0,11,0:39:99:532,460,1731,0,1138,1177,555,1685,1196,1788:15,13,3,8 +chrX 1478274 . C . . END=1478280 GT:DP:GQ:MIN_DP:PL 0/0:52:0:52:0,0,1091 +chrX 1478281 . G . . END=1478281 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 1478282 . G . . END=1478282 GT:DP:GQ:MIN_DP:PL 0/0:56:0:56:0,0,1419 +chrX 1478283 . G . . END=1478283 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1478284 . A . . END=1478285 GT:DP:GQ:MIN_DP:PL 0/0:59:0:59:0,0,1448 +chrX 1478286 . G . . END=1478286 GT:DP:GQ:MIN_DP:PL 0/0:58:21:58:0,21,1579 +chrX 1478287 . C . . END=1478288 GT:DP:GQ:MIN_DP:PL 0/0:59:0:59:0,0,1514 +chrX 1478289 . G . . END=1478374 GT:DP:GQ:MIN_DP:PL 0/0:64:41:64:0,41,1636 +chrX 1478375 . G A, 710.64 . AS_QUALapprox=|718|0;AS_VarDP=33|30|0;BaseQRankSum=-1.125;DP=64;MQRankSum=0.000;QUALapprox=718;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=-0.324;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:33,30,0:63:99:718,0,867,818,956,1774:13,20,14,16 +chrX 1478376 . A . . END=1478472 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 1478473 . T TTTTA, 670.60 . AS_QUALapprox=|678|0;AS_VarDP=22|18|0;BaseQRankSum=-0.688;DP=46;MQRankSum=0.000;QUALapprox=678;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=0.449;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:22,18,0:40:99:678,0,843,744,897,1642:8,14,8,10 +chrX 1478474 . T . . END=1478547 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,117,1755 +chrX 1478548 . G A, 628.64 . AS_QUALapprox=|636|0;AS_VarDP=29|24|0;BaseQRankSum=1.786;DP=58;MQRankSum=0.000;QUALapprox=636;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-0.340;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:29,24,0:53:99:636,0,709,722,781,1503:18,11,10,14 +chrX 1478549 . G . . END=1478605 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 1478606 . A G, 889.64 . AS_QUALapprox=|897|0;AS_VarDP=23|32|0;BaseQRankSum=0.186;DP=56;MQRankSum=0.000;QUALapprox=897;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=0.905;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:23,32,0:55:99:897,0,594,966,690,1656:13,10,18,14 +chrX 1478607 . T . . END=1478674 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,101,1539 +chrX 1478675 . C T, 868.64 . AS_QUALapprox=|876|0;AS_VarDP=27|32|0;BaseQRankSum=1.266;DP=59;MQRankSum=-0.885;QUALapprox=876;RAW_GT_COUNT=0,1,0;RAW_MQandDP=211609,59;ReadPosRankSum=1.202;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:27,32,0:59:99:876,0,686,957,781,1738:18,9,15,17 +chrX 1478676 . C . . END=1478769 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 1478770 . T G, 690.64 . AS_QUALapprox=|698|0;AS_VarDP=36|29|0;BaseQRankSum=-1.146;DP=68;MQRankSum=-1.083;QUALapprox=698;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244009,68;ReadPosRankSum=-0.673;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:36,29,0:65:99:698,0,976,806,1063,1869:19,17,10,19 +chrX 1478771 . C . . END=1478791 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 1478792 . T C, 608.64 . AS_QUALapprox=|616|0;AS_VarDP=39|25|0;BaseQRankSum=-0.845;DP=66;MQRankSum=0.000;QUALapprox=616;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=0.172;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:39,25,0:64:99:616,0,1103,734,1178,1911:19,20,8,17 +chrX 1478793 . G . . END=1478827 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1478828 . A G, 564.64 . AS_QUALapprox=|572|0;AS_VarDP=31|23|0;BaseQRankSum=-1.249;DP=55;MQRankSum=0.000;QUALapprox=572;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-0.271;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:31,23,0:54:99:572,0,884,666,952,1618:17,14,9,14 +chrX 1478829 . G . . END=1478855 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 1478856 . A G, 523.64 . AS_QUALapprox=|531|0;AS_VarDP=32|21|0;BaseQRankSum=-0.013;DP=53;MQRankSum=0.000;QUALapprox=531;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=0.992;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:32,21,0:53:99:531,0,892,627,955,1582:18,14,7,14 +chrX 1478857 . C . . END=1478897 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1478898 . T C, 727.64 . AS_QUALapprox=|735|0;AS_VarDP=38|29|0;BaseQRankSum=-0.835;DP=69;MQRankSum=0.000;QUALapprox=735;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=0.817;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:38,29,0:67:99:735,0,1089,850,1175,2025:24,14,17,12 +chrX 1478899 . G . . END=1479394 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,120,1800 +chrX 1479395 . A G, 859.64 . AS_QUALapprox=|867|0;AS_VarDP=41|34|0;BaseQRankSum=0.086;DP=78;MQRankSum=0.000;QUALapprox=867;RAW_GT_COUNT=0,1,0;RAW_MQandDP=280800,78;ReadPosRankSum=0.623;VarDP=75 GT:AD:DP:GQ:PL:SB 0/1:41,34,0:75:99:867,0,1121,990,1222,2212:11,30,14,20 +chrX 1479396 . T . . END=1479704 GT:DP:GQ:MIN_DP:PL 0/0:74:99:74:0,120,1800 +chrX 1479705 . C G, 834.64 . AS_QUALapprox=|842|0;AS_VarDP=23|31|0;BaseQRankSum=-0.341;DP=56;MQRankSum=0.000;QUALapprox=842;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-0.665;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:23,31,0:54:99:842,0,608,911,700,1611:10,13,14,17 +chrX 1479706 . T . . END=1480295 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 1480296 . CT C, 525.60 . AS_QUALapprox=|533|0;AS_VarDP=18|16|0;BaseQRankSum=0.701;DP=52;MQRankSum=0.000;QUALapprox=533;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=-0.155;VarDP=34 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:18,16,0:34:99:0|1:1480296_CT_C:533,0,643,587,691,1279:1480296:9,9,10,6 +chrX 1480298 . T . . END=1480317 GT:DP:GQ:MIN_DP:PL 0/0:38:87:38:0,87,1305 +chrX 1480318 . G A, 632.64 . AS_QUALapprox=|640|0;AS_VarDP=18|18|0;BaseQRankSum=3.015;DP=37;MQRankSum=0.000;QUALapprox=640;RAW_GT_COUNT=0,1,0;RAW_MQandDP=133200,37;ReadPosRankSum=-0.661;VarDP=36 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:18,18,0:36:99:0|1:1480296_CT_C:640,0,644,694,698,1393:1480296:9,9,12,6 +chrX 1480319 . T . . END=1480382 GT:DP:GQ:MIN_DP:PL 0/0:40:86:40:0,86,1140 +chrX 1480383 . C T, 708.64 . AS_QUALapprox=|716|0;AS_VarDP=26|20|0;BaseQRankSum=2.468;DP=48;MQRankSum=0.000;QUALapprox=716;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=0.321;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,20,0:46:99:0|1:1480383_C_T:716,0,1022,795,1081,1876:1480383:15,11,14,6 +chrX 1480384 . G . . END=1480392 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,120,1800 +chrX 1480393 . GTTT G, 716.60 . AS_QUALapprox=|724|0;AS_VarDP=35|20|0;BaseQRankSum=1.336;DP=56;MQRankSum=0.000;QUALapprox=724;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=0.997;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:35,20,0:55:99:0|1:1480383_C_T:724,0,1389,830,1449,2279:1480383:20,15,15,5 +chrX 1480397 . T . . END=1480419 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 1480420 . T G, 709.64 . AS_QUALapprox=|717|0;AS_VarDP=34|20|0;BaseQRankSum=0.599;DP=57;MQRankSum=0.000;QUALapprox=717;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-0.251;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:34,20,0:54:99:0|1:1480383_C_T:717,0,1315,819,1375,2194:1480383:19,15,14,6 +chrX 1480421 . C . . END=1480445 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 1480446 . A G, 578.64 . AS_QUALapprox=|586|0;AS_VarDP=34|24|0;BaseQRankSum=0.394;DP=61;MQRankSum=0.000;QUALapprox=586;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-1.169;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:34,24,0:58:99:586,0,878,687,950,1637:17,17,14,10 +chrX 1480447 . G . . END=1480515 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1480516 . TA T, 889.60 . AS_QUALapprox=|897|0;AS_VarDP=33|29|0;BaseQRankSum=1.083;DP=66;MQRankSum=-1.034;QUALapprox=897;RAW_GT_COUNT=0,1,0;RAW_MQandDP=236916,66;ReadPosRankSum=0.466;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:33,29,0:62:99:897,0,1042,996,1130,2126:17,16,13,16 +chrX 1480518 . A . . END=1480686 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,108,1240 +chrX 1480687 . A G, 599.64 . AS_QUALapprox=|607|0;AS_VarDP=22|25|0;BaseQRankSum=-3.069;DP=49;MQRankSum=-0.895;QUALapprox=607;RAW_GT_COUNT=0,1,0;RAW_MQandDP=175825,49;ReadPosRankSum=-1.141;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:22,25,0:47:99:607,0,624,673,699,1372:5,17,11,14 +chrX 1480688 . G . . END=1480751 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,101,1355 +chrX 1480752 . C A, 665.64 . AS_QUALapprox=|673|0;AS_VarDP=23|26|0;BaseQRankSum=-0.523;DP=49;MQRankSum=-0.900;QUALapprox=673;RAW_GT_COUNT=0,1,0;RAW_MQandDP=175825,49;ReadPosRankSum=1.813;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:23,26,0:49:99:673,0,567,741,645,1386:6,17,14,12 +chrX 1480753 . T . . END=1480904 GT:DP:GQ:MIN_DP:PL 0/0:49:95:49:0,95,1175 +chrX 1480905 . G GA, 458.60 . AS_QUALapprox=|466|0;AS_VarDP=30|23|0;BaseQRankSum=-0.899;DP=55;MQRankSum=0.000;QUALapprox=466;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=1.365;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:30,23,0:53:99:0|1:1480905_G_GA:466,0,1191,556,1260,1816:1480905:17,13,15,8 +chrX 1480906 . A . . END=1480915 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1480916 . A C, 1258.64 . AS_QUALapprox=|1266|0;AS_VarDP=26|32|0;BaseQRankSum=-0.473;DP=58;MQRankSum=0.000;QUALapprox=1266;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-0.858;VarDP=58 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:26,32,0:58:99:1|0:1480905_G_GA:1266,0,960,1344,1057,2400:1480905:16,10,18,14 +chrX 1480917 . A C, 1258.64 . AS_QUALapprox=|1266|0;AS_VarDP=26|32|0;BaseQRankSum=-0.366;DP=58;MQRankSum=0.000;QUALapprox=1266;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-0.982;VarDP=58 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:26,32,0:58:99:1|0:1480905_G_GA:1266,0,960,1344,1057,2400:1480905:16,10,18,14 +chrX 1480918 . C . . END=1480941 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1480942 . G A, 1195.64 . AS_QUALapprox=|1203|0;AS_VarDP=29|33|0;BaseQRankSum=1.485;DP=63;MQRankSum=0.000;QUALapprox=1203;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=1.172;VarDP=62 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:29,33,0:62:99:1|0:1480905_G_GA:1203,0,936,1289,1035,2325:1480905:17,12,19,14 +chrX 1480943 . A . . END=1481170 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 1481171 . A AT, 554.60 . AS_QUALapprox=|562|0;AS_VarDP=30|28|0;BaseQRankSum=2.659;DP=70;MQRankSum=0.000;QUALapprox=562;RAW_GT_COUNT=0,1,0;RAW_MQandDP=252000,70;ReadPosRankSum=0.584;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:30,28,0:58:99:562,0,619,653,703,1356:15,15,17,11 +chrX 1481172 . T . . END=1482159 GT:DP:GQ:MIN_DP:PL 0/0:53:84:53:0,84,1001 +chrX 1482160 . GGT G, 1418.03 . AS_QUALapprox=|1432|0;AS_VarDP=0|43|0;DP=55;QUALapprox=1432;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=43 GT:AD:DP:GQ:PL:SB 1/1:0,43,0:43:99:1432,130,0,1432,130,1432:0,0,20,23 +chrX 1482163 . G . . END=1482205 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,105,1470 +chrX 1482206 . T TCAA, 2046.03 . AS_QUALapprox=|2060|0;AS_VarDP=0|46|0;DP=49;QUALapprox=2060;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,46,0:46:99:0|1:1482206_T_TCAA:2060,138,0,2060,138,2060:1482206:0,0,22,24 +chrX 1482207 . C . . END=1482213 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,120,1800 +chrX 1482214 . A T, 2011.06 . AS_QUALapprox=|2025|0;AS_VarDP=0|45|0;DP=46;QUALapprox=2025;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;VarDP=45 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,45,0:45:99:0|1:1482206_T_TCAA:2025,135,0,2025,135,2025:1482206:0,0,22,23 +chrX 1482215 . G . . END=1482696 GT:DP:GQ:MIN_DP:PL 0/0:61:43:61:0,43,1333 +chrX 1482697 . TAG T, 2633.03 . AS_QUALapprox=|2647|0;AS_VarDP=0|59|0;DP=62;QUALapprox=2647;RAW_GT_COUNT=0,0,1;RAW_MQandDP=221904,62;VarDP=59 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,59,0:59:99:0|1:1482697_TAG_T:2647,178,0,2647,178,2647:1482697:0,0,32,27 +chrX 1482700 . T TAC, 2633.03 . AS_QUALapprox=|2647|0;AS_VarDP=0|59|0;DP=61;QUALapprox=2647;RAW_GT_COUNT=0,0,1;RAW_MQandDP=218304,61;VarDP=59 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,59,0:59:99:0|1:1482697_TAG_T:2647,178,0,2647,178,2647:1482697:0,0,32,27 +chrX 1482701 . C . . END=1482809 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1482810 . C G, 1761.06 . AS_QUALapprox=|1775|0;AS_VarDP=0|54|0;DP=55;QUALapprox=1775;RAW_GT_COUNT=0,0,1;RAW_MQandDP=131181,55;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:1775,161,0,1775,161,1775:0,0,28,26 +chrX 1482811 . G . . END=1482858 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 1482859 . T C, 1693.06 . AS_QUALapprox=|1707|0;AS_VarDP=0|53|0;DP=54;QUALapprox=1707;RAW_GT_COUNT=0,0,1;RAW_MQandDP=119655,54;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1707,158,0,1707,158,1707:0,0,30,23 +chrX 1482860 . G . . END=1482990 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,108,1535 +chrX 1482991 . C T, 3202.06 . AS_QUALapprox=|3216|0;AS_VarDP=0|78|0;DP=78;QUALapprox=3216;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223405,78;VarDP=78 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,78,0:78:99:0|1:1482991_C_T:3216,234,0,3216,234,3216:1482991:0,0,44,34 +chrX 1482992 . T . . END=1482995 GT:DP:GQ:MIN_DP:PL 0/0:76:99:76:0,120,1800 +chrX 1482996 . T C, 3212.06 . AS_QUALapprox=|3226|0;AS_VarDP=0|78|0;DP=78;QUALapprox=3226;RAW_GT_COUNT=0,0,1;RAW_MQandDP=225405,78;VarDP=78 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,78,0:78:99:0|1:1482991_C_T:3226,234,0,3226,234,3226:1482991:0,0,44,34 +chrX 1482997 . G . . END=1483087 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 1483088 . G A, 2225.06 . AS_QUALapprox=|2239|0;AS_VarDP=0|68|0;DP=71;QUALapprox=2239;RAW_GT_COUNT=0,0,1;RAW_MQandDP=236716,71;VarDP=68 GT:AD:DP:GQ:PL:SB 1/1:0,68,0:68:99:2239,204,0,2239,204,2239:0,0,31,37 +chrX 1483089 . A . . END=1484491 GT:DP:GQ:MIN_DP:PL 0/0:53:35:45:0,35,999 +chrX 1484492 . T A, 2105.06 . AS_QUALapprox=|2119|0;AS_VarDP=0|65|0;DP=69;QUALapprox=2119;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=65 GT:AD:DP:GQ:PL:SB 1/1:0,65,0:65:99:2119,195,0,2119,195,2119:0,0,28,37 +chrX 1484493 . G . . END=1484718 GT:DP:GQ:MIN_DP:PL 0/0:34:36:31:0,36,630 +chrX 1484719 . C . . END=1484723 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,249 +chrX 1484724 . T TAAAAAAA,TAAAAAAAAAAAAAAAA, 550.02 . AS_QUALapprox=|564|112|0;AS_VarDP=0|10|0|0;DP=38;QUALapprox=564;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118004,38;VarDP=10 GT:AD:DP:GQ:PL:SB 1/1:0,10,0,0:10:31:564,37,0,458,31,452,516,39,460,510:0,0,0,10 +chrX 1484725 . A . . END=1484748 GT:DP:GQ:MIN_DP:PL 0/0:21:30:21:0,30,450 +chrX 1484749 . G *,A, 563.05 . AS_QUALapprox=|0|807|0;AS_VarDP=0|0|12|0;DP=34;QUALapprox=807;RAW_GT_COUNT=0,0,1;RAW_MQandDP=105680,34;VarDP=12 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 2|2:0,0,12,0:12:41:0|1:1484749_G_*:807,550,605,60,41,0,695,593,65,707:1484749:0,0,1,11 +chrX 1484750 . A . . END=1484750 GT:DP:GQ:MIN_DP:PL 0/0:22:0:22:0,0,188 +chrX 1484751 . A . . END=1484751 GT:DP:GQ:MIN_DP:PL 0/0:26:41:26:0,41,605 +chrX 1484752 . G *,A, 566.05 . AS_QUALapprox=|0|864|0;AS_VarDP=0|0|13|0;DP=25;QUALapprox=864;RAW_GT_COUNT=0,0,1;RAW_MQandDP=80841,25;VarDP=13 GT:AD:DP:GQ:PL:SB 2/2:0,0,13,0:13:41:864,553,605,62,41,0,725,595,66,736:0,0,2,11 +chrX 1484753 . A . . END=1484754 GT:DP:GQ:MIN_DP:PL 0/0:31:40:31:0,40,604 +chrX 1484755 . G *,A, 563.05 . AS_QUALapprox=|0|848|0;AS_VarDP=0|0|12|0;DP=26;QUALapprox=848;RAW_GT_COUNT=0,0,1;RAW_MQandDP=84441,26;VarDP=12 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 2|2:0,0,12,0:12:41:0|1:1484749_G_*:848,550,605,60,41,0,716,593,66,728:1484749:0,0,1,11 +chrX 1484756 . A . . END=1484757 GT:DP:GQ:MIN_DP:PL 0/0:23:60:23:0,60,900 +chrX 1484758 . G . . END=1484758 GT:DP:GQ:MIN_DP:PL 0/0:24:3:24:0,3,675 +chrX 1484759 . A . . END=1484985 GT:DP:GQ:MIN_DP:PL 0/0:34:31:29:0,31,790 +chrX 1484986 . CT C, 215.97 . AS_QUALapprox=|230|0;AS_VarDP=2|13|0;BaseQRankSum=0.369;DP=58;MQRankSum=0.000;QUALapprox=230;RAW_GT_COUNT=0,0,1;RAW_MQandDP=204800,58;ReadPosRankSum=-0.340;VarDP=15 GT:AD:DP:GQ:PL:SB 1/1:2,13,0:15:20:230,20,0,235,39,254:1,1,4,9 +chrX 1484988 . T . . END=1485232 GT:DP:GQ:MIN_DP:PL 0/0:55:51:55:0,51,1285 +chrX 1485233 . C G, 1996.06 . AS_QUALapprox=|2010|0;AS_VarDP=0|62|0;DP=64;QUALapprox=2010;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:0,62,0:62:99:2010,186,0,2010,186,2010:0,0,26,36 +chrX 1485234 . T . . END=1485286 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1485287 . A G, 1892.06 . AS_QUALapprox=|1906|0;AS_VarDP=0|59|0;DP=60;QUALapprox=1906;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1906,177,0,1906,177,1906:0,0,28,31 +chrX 1485288 . C . . END=1485925 GT:DP:GQ:MIN_DP:PL 0/0:73:99:73:0,120,1800 +chrX 1485926 . G A, 2606.06 . AS_QUALapprox=|2620|0;AS_VarDP=0|80|0;DP=83;QUALapprox=2620;RAW_GT_COUNT=0,0,1;RAW_MQandDP=298800,83;VarDP=80 GT:AD:DP:GQ:PL:SB 1/1:0,80,0:80:99:2620,240,0,2620,240,2620:0,0,50,30 +chrX 1485927 . T . . END=1485980 GT:DP:GQ:MIN_DP:PL 0/0:78:99:78:0,120,1800 +chrX 1485981 . A G, 2545.06 . AS_QUALapprox=|2559|0;AS_VarDP=0|77|0;DP=80;QUALapprox=2559;RAW_GT_COUNT=0,0,1;RAW_MQandDP=288000,80;VarDP=77 GT:AD:DP:GQ:PL:SB 1/1:0,77,0:77:99:2559,231,0,2559,231,2559:0,0,47,30 +chrX 1485982 . G . . END=1486143 GT:DP:GQ:MIN_DP:PL 0/0:81:99:81:0,120,1800 +chrX 1486144 . G A, 936.64 . AS_QUALapprox=|944|0;AS_VarDP=36|35|0;BaseQRankSum=-0.256;DP=74;MQRankSum=-0.986;QUALapprox=944;RAW_GT_COUNT=0,1,0;RAW_MQandDP=265936,74;ReadPosRankSum=0.500;VarDP=71 GT:AD:DP:GQ:PL:SB 0/1:36,35,0:71:99:944,0,956,1051,1061,2112:13,23,13,22 +chrX 1486145 . G . . END=1486574 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 1486575 . G C, 1008.64 . AS_QUALapprox=|1016|0;AS_VarDP=36|39|0;BaseQRankSum=-0.546;DP=78;MQRankSum=0.000;QUALapprox=1016;RAW_GT_COUNT=0,1,0;RAW_MQandDP=278644,78;ReadPosRankSum=-1.056;VarDP=75 GT:AD:DP:GQ:PL:SB 0/1:36,39,0:75:99:1016,0,926,1123,1042,2166:17,19,17,22 +chrX 1486576 . A . . END=1486917 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 1486918 . G A, 738.64 . AS_QUALapprox=|746|0;AS_VarDP=27|27|0;BaseQRankSum=-1.010;DP=58;MQRankSum=0.000;QUALapprox=746;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-0.026;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:27,27,0:54:99:746,0,766,827,847,1675:12,15,16,11 +chrX 1486919 . G . . END=1487117 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 1487118 . C G, 2435.06 . AS_QUALapprox=|2449|0;AS_VarDP=0|77|0;DP=78;QUALapprox=2449;RAW_GT_COUNT=0,0,1;RAW_MQandDP=280800,78;VarDP=77 GT:AD:DP:GQ:PL:SB 1/1:0,77,0:77:99:2449,231,0,2449,231,2449:0,0,40,37 +chrX 1487119 . T . . END=1487349 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 1487350 . G A, 788.64 . AS_QUALapprox=|796|0;AS_VarDP=25|29|0;BaseQRankSum=1.589;DP=57;MQRankSum=0.000;QUALapprox=796;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-0.347;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:25,29,0:54:99:796,0,647,871,733,1605:9,16,13,16 +chrX 1487351 . T . . END=1488256 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,109,1467 +chrX 1488257 . C T, 1828.06 . AS_QUALapprox=|1842|0;AS_VarDP=0|55|0;DP=57;QUALapprox=1842;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1842,165,0,1842,165,1842:0,0,28,27 +chrX 1488258 . C . . END=1488732 GT:DP:GQ:MIN_DP:PL 0/0:68:74:68:0,74,1536 +chrX 1488733 . GGT G,GGTGT, 508.60 . AS_QUALapprox=|0|516|0;AS_VarDP=15|2|20|0;BaseQRankSum=1.855;DP=52;MQRankSum=0.000;QUALapprox=516;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=1.516;VarDP=37 GT:AD:DP:GQ:PL:SB 0/2:15,2,20,0:37:99:516,569,1318,0,376,417,623,1186,468,1216:9,6,9,13 +chrX 1488736 . G . . END=1488818 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,119,1603 +chrX 1488819 . ACACT A, 1254.60 . AS_QUALapprox=|1262|0;AS_VarDP=27|32|0;BaseQRankSum=1.308;DP=61;MQRankSum=0.000;QUALapprox=1262;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=1.046;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:27,32,0:59:99:1262,0,1026,1344,1123,2466:14,13,14,18 +chrX 1488824 . C . . END=1488877 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1488878 . T C, 2150.06 . AS_QUALapprox=|2164|0;AS_VarDP=0|64|0;DP=67;QUALapprox=2164;RAW_GT_COUNT=0,0,1;RAW_MQandDP=240100,67;VarDP=64 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:2164,192,0,2164,192,2164:0,0,34,30 +chrX 1488879 . A . . END=1489092 GT:DP:GQ:MIN_DP:PL 0/0:53:30:52:0,30,1400 +chrX 1489093 . C T, 763.64 . AS_QUALapprox=|771|0;AS_VarDP=21|28|0;BaseQRankSum=-0.033;DP=50;MQRankSum=0.000;QUALapprox=771;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=0.768;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:21,28,0:49:99:771,0,553,834,637,1471:8,13,12,16 +chrX 1489094 . A . . END=1489119 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 1489120 . G A, 683.64 . AS_QUALapprox=|691|0;AS_VarDP=29|27|0;BaseQRankSum=-0.234;DP=59;MQRankSum=0.000;QUALapprox=691;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=2.018;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:29,27,0:56:99:691,0,789,778,869,1647:16,13,10,17 +chrX 1489121 . A . . END=1489419 GT:DP:GQ:MIN_DP:PL 0/0:52:21:50:0,21,1096 +chrX 1489420 . T . . END=1489420 GT:DP:GQ:MIN_DP:PL 0/0:25:0:25:0,0,550 +chrX 1489421 . A . . END=1489435 GT:DP:GQ:MIN_DP:PL 0/0:31:58:31:0,58,908 +chrX 1489436 . G T, 203.64 . AS_QUALapprox=|211|0;AS_VarDP=17|9|0;BaseQRankSum=0.789;DP=29;MQRankSum=-0.157;QUALapprox=211;RAW_GT_COUNT=0,1,0;RAW_MQandDP=91448,29;ReadPosRankSum=-1.375;VarDP=26 GT:AD:DP:GQ:PL:SB 0/1:17,9,0:26:99:211,0,405,260,431,691:9,8,7,2 +chrX 1489437 . A . . END=1489725 GT:DP:GQ:MIN_DP:PL 0/0:34:38:32:0,38,899 +chrX 1489726 . C G, 282.64 . AS_QUALapprox=|290|0;AS_VarDP=12|13|0;BaseQRankSum=-1.360;DP=25;MQRankSum=0.928;QUALapprox=290;RAW_GT_COUNT=0,1,0;RAW_MQandDP=73226,25;ReadPosRankSum=-0.490;VarDP=25 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:12,13,0:25:99:0|1:1489726_C_G:290,0,444,326,483,809:1489726:5,7,7,6 +chrX 1489727 . G A, 299.64 . AS_QUALapprox=|307|0;AS_VarDP=14|11|0;BaseQRankSum=2.294;DP=26;MQRankSum=-0.271;QUALapprox=307;RAW_GT_COUNT=0,1,0;RAW_MQandDP=74826,26;ReadPosRankSum=0.232;VarDP=25 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:14,11,0:25:99:1|0:1489726_C_G:307,0,512,349,545,895:1489726:8,6,4,7 +chrX 1489728 . C . . END=1489813 GT:DP:GQ:MIN_DP:PL 0/0:18:20:14:0,20,452 +chrX 1489814 . T . . END=1489815 GT:DP:GQ:MIN_DP:PL 0/0:15:10:15:0,10,411 +chrX 1489816 . C . . END=1489872 GT:DP:GQ:MIN_DP:PL 0/0:14:21:11:0,21,315 +chrX 1489873 . A . . END=1489873 GT:DP:GQ:MIN_DP:PL 0/0:9:2:9:0,2,253 +chrX 1489874 . T . . END=1489875 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,315 +chrX 1489876 . A . . END=1490061 GT:DP:GQ:MIN_DP:PL 0/0:0:0:0:0,0,0 +chrX 1490062 . A . . END=1490082 GT:DP:GQ:MIN_DP:PL 0/0:10:24:9:0,24,248 +chrX 1490083 . A . . END=1490083 GT:DP:GQ:MIN_DP:PL 0/0:12:0:12:0,0,278 +chrX 1490084 . G . . END=1490100 GT:DP:GQ:MIN_DP:PL 0/0:13:33:12:0,33,372 +chrX 1490101 . A . . END=1490101 GT:DP:GQ:MIN_DP:PL 0/0:14:17:14:0,17,407 +chrX 1490102 . C . . END=1490220 GT:DP:GQ:MIN_DP:PL 0/0:15:30:13:0,30,450 +chrX 1490221 . A . . END=1490222 GT:DP:GQ:MIN_DP:PL 0/0:15:10:15:0,10,407 +chrX 1490223 . G . . END=1490232 GT:DP:GQ:MIN_DP:PL 0/0:13:21:11:0,21,315 +chrX 1490233 . T . . END=1490233 GT:DP:GQ:MIN_DP:PL 0/0:10:15:10:0,15,278 +chrX 1490234 . A . . END=1490247 GT:DP:GQ:MIN_DP:PL 0/0:10:21:10:0,21,292 +chrX 1490248 . C . . END=1490248 GT:DP:GQ:MIN_DP:PL 0/0:9:0:9:0,0,243 +chrX 1490249 . A . . END=1490257 GT:DP:GQ:MIN_DP:PL 0/0:11:24:9:0,24,278 +chrX 1490258 . G . . END=1490258 GT:DP:GQ:MIN_DP:PL 0/0:14:17:14:0,17,407 +chrX 1490259 . G . . END=1490543 GT:DP:GQ:MIN_DP:PL 0/0:15:27:14:0,27,405 +chrX 1490544 . G . . END=1490544 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,668 +chrX 1490545 . G . . END=1490664 GT:DP:GQ:MIN_DP:PL 0/0:28:44:28:0,44,690 +chrX 1490665 . A G, 297.64 . AS_QUALapprox=|305|0;AS_VarDP=10|14|0;BaseQRankSum=-2.786;DP=24;MQRankSum=-0.294;QUALapprox=305;RAW_GT_COUNT=0,1,0;RAW_MQandDP=36726,24;ReadPosRankSum=-2.171;VarDP=24 GT:AD:DP:GQ:PL:SB 0/1:10,14,0:24:99:305,0,249,335,291,625:6,4,9,5 +chrX 1490666 . T . . END=1491643 GT:DP:GQ:MIN_DP:PL 0/0:59:35:51:0,35,772 +chrX 1491644 . T . . END=1491644 GT:DP:GQ:MIN_DP:PL 0/0:74:0:74:0,0,1242 +chrX 1491645 . G . . END=1491701 GT:DP:GQ:MIN_DP:PL 0/0:85:99:85:0,120,1800 +chrX 1491702 . G . . END=1491702 GT:DP:GQ:MIN_DP:PL 0/0:72:0:72:0,0,804 +chrX 1491703 . T . . END=1491724 GT:DP:GQ:MIN_DP:PL 0/0:89:99:89:0,120,1800 +chrX 1491725 . G . . END=1491725 GT:DP:GQ:MIN_DP:PL 0/0:74:0:74:0,0,446 +chrX 1491726 . T . . END=1491792 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,118,1800 +chrX 1491793 . A AAATG, 864.60 . AS_QUALapprox=|872|0;AS_VarDP=17|22|0;BaseQRankSum=0.854;DP=53;MQRankSum=-0.524;QUALapprox=872;RAW_GT_COUNT=0,1,0;RAW_MQandDP=155870,53;ReadPosRankSum=1.289;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:17,22,0:39:99:872,0,612,924,679,1602:9,8,10,12 +chrX 1491794 . A . . END=1491982 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,116,1534 +chrX 1491983 . C T, 687.64 . AS_QUALapprox=|695|0;AS_VarDP=19|24|0;BaseQRankSum=0.235;DP=44;MQRankSum=0.000;QUALapprox=695;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=1.493;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:19,24,0:43:99:695,0,506,752,579,1331:8,11,14,10 +chrX 1491984 . C . . END=1492359 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,113,1709 +chrX 1492360 . A G, 1803.06 . AS_QUALapprox=|1817|0;AS_VarDP=0|54|0;DP=56;QUALapprox=1817;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:1817,162,0,1817,162,1817:0,0,26,28 +chrX 1492361 . A . . END=1492723 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,118,1525 +chrX 1492724 . C G, 939.64 . AS_QUALapprox=|947|0;AS_VarDP=21|34|0;BaseQRankSum=-0.388;DP=57;MQRankSum=0.000;QUALapprox=947;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=0.355;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:21,34,0:55:99:947,0,505,1010,607,1617:11,10,17,17 +chrX 1492725 . A . . END=1493055 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,116,1682 +chrX 1493056 . A G, 722.64 . AS_QUALapprox=|730|0;AS_VarDP=32|29|0;BaseQRankSum=-0.860;DP=65;MQRankSum=-1.474;QUALapprox=730;RAW_GT_COUNT=0,1,0;RAW_MQandDP=232525,65;ReadPosRankSum=0.144;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:32,29,0:61:99:730,0,869,826,956,1782:11,21,11,18 +chrX 1493057 . G . . END=1493160 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 1493161 . G A, 891.64 . AS_QUALapprox=|899|0;AS_VarDP=25|31|0;BaseQRankSum=1.275;DP=70;MQRankSum=0.000;QUALapprox=899;RAW_GT_COUNT=0,1,0;RAW_MQandDP=251425,70;ReadPosRankSum=-1.286;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:25,31,0:56:99:899,0,670,974,764,1738:2,23,9,22 +chrX 1493162 . C . . END=1493317 GT:DP:GQ:MIN_DP:PL 0/0:16:23:15:0,23,405 +chrX 1493318 . G . . END=1493324 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,0 +chrX 1493325 . G . . END=1493326 GT:DP:GQ:MIN_DP:PL 0/0:17:24:17:0,24,360 +chrX 1493327 . A . . END=1493327 GT:DP:GQ:MIN_DP:PL 0/0:15:10:15:0,10,411 +chrX 1493328 . G . . END=1493331 GT:DP:GQ:MIN_DP:PL 0/0:15:24:15:0,24,360 +chrX 1493332 . A . . END=1493332 GT:DP:GQ:MIN_DP:PL 0/0:16:13:16:0,13,416 +chrX 1493333 . G . . END=1493336 GT:DP:GQ:MIN_DP:PL 0/0:17:30:17:0,30,450 +chrX 1493337 . AGGGG A, 330.99 . AS_QUALapprox=|345|0;AS_VarDP=1|10|0;BaseQRankSum=1.569;DP=17;MQRankSum=0.000;QUALapprox=345;RAW_GT_COUNT=0,0,1;RAW_MQandDP=58896,17;ReadPosRankSum=-1.265;VarDP=11 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:1,10,0:11:23:0|1:1493337_AGGGG_A:345,23,0,347,30,354:1493337:1,0,10,0 +chrX 1493342 . AG A, 329.99 . AS_QUALapprox=|344|0;AS_VarDP=1|10|0;BaseQRankSum=1.064;DP=16;MQRankSum=0.000;QUALapprox=344;RAW_GT_COUNT=0,0,1;RAW_MQandDP=55296,16;ReadPosRankSum=-1.265;VarDP=11 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:1,10,0:11:23:0|1:1493337_AGGGG_A:344,23,0,347,30,354:1493337:1,0,10,0 +chrX 1493344 . G . . END=1493354 GT:DP:GQ:MIN_DP:PL 0/0:9:15:9:0,15,225 +chrX 1493355 . G . . END=1493394 GT:DP:GQ:MIN_DP:PL 0/0:11:21:9:0,21,258 +chrX 1493395 . GGGAAGGA G, 217.60 . AS_QUALapprox=|225|0;AS_VarDP=9|6|0;BaseQRankSum=0.000;DP=17;MQRankSum=0.524;QUALapprox=225;RAW_GT_COUNT=0,1,0;RAW_MQandDP=60964,17;ReadPosRankSum=-0.832;VarDP=15 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:9,6,0:15:99:0|1:1493395_GGGAAGGA_G:225,0,360,252,378,630:1493395:8,1,6,0 +chrX 1493403 . G . . END=1493420 GT:DP:GQ:MIN_DP:PL 0/0:16:45:16:0,45,471 +chrX 1493421 . GA G, 211.60 . AS_QUALapprox=|219|0;AS_VarDP=11|6|0;BaseQRankSum=-1.162;DP=18;MQRankSum=0.862;QUALapprox=219;RAW_GT_COUNT=0,1,0;RAW_MQandDP=64564,18;ReadPosRankSum=0.651;VarDP=17 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:11,6,0:17:99:0|1:1493395_GGGAAGGA_G:219,0,444,252,462,714:1493395:10,1,6,0 +chrX 1493423 . A . . END=1493425 GT:DP:GQ:MIN_DP:PL 0/0:17:45:17:0,45,675 +chrX 1493426 . AGGAGGGAGGGAAGG A, 208.60 . AS_QUALapprox=|216|0;AS_VarDP=12|6|0;BaseQRankSum=-1.231;DP=19;MQRankSum=0.825;QUALapprox=216;RAW_GT_COUNT=0,1,0;RAW_MQandDP=68164,19;ReadPosRankSum=1.106;VarDP=18 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:12,6,0:18:99:0|1:1493395_GGGAAGGA_G:216,0,476,252,494,746:1493395:11,1,6,0 +chrX 1493441 . A . . END=1493459 GT:DP:GQ:MIN_DP:PL 0/0:20:33:16:0,33,466 +chrX 1493460 . G GAA, 349.60 . AS_QUALapprox=|357|0;AS_VarDP=6|10|0;BaseQRankSum=1.420;DP=32;MQRankSum=-0.645;QUALapprox=357;RAW_GT_COUNT=0,1,0;RAW_MQandDP=111560,32;ReadPosRankSum=-1.358;VarDP=16 GT:AD:DP:GQ:PL:SB 0/1:6,10,0:16:99:357,0,226,379,256,635:6,0,9,1 +chrX 1493461 . G A,GGAGGA, 1125.06 . AS_QUALapprox=|754|916|0;AS_VarDP=0|6|10|0;DP=32;QUALapprox=1142;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111560,32;VarDP=16 GT:AD:DP:GQ:PL:SB 1/2:0,6,10,0:16:99:1142,431,388,303,0,226,940,442,301,904:0,0,15,1 +chrX 1493462 . A . . END=1493547 GT:DP:GQ:MIN_DP:PL 0/0:56:67:56:0,67,1002 +chrX 1493548 . G C, 899.64 . AS_QUALapprox=|907|0;AS_VarDP=38|35|0;BaseQRankSum=-0.391;DP=73;MQRankSum=0.000;QUALapprox=907;RAW_GT_COUNT=0,1,0;RAW_MQandDP=262800,73;ReadPosRankSum=0.022;VarDP=73 GT:AD:DP:GQ:PL:SB 0/1:38,35,0:73:99:907,0,1007,1021,1112,2133:19,19,21,14 +chrX 1493549 . A . . END=1493796 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 1493797 . T C, 2165.06 . AS_QUALapprox=|2179|0;AS_VarDP=0|65|0;DP=65;QUALapprox=2179;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=65 GT:AD:DP:GQ:PL:SB 1/1:0,65,0:65:99:2179,195,0,2179,195,2179:0,0,35,30 +chrX 1493798 . T . . END=1493926 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1493927 . C G, 2397.06 . AS_QUALapprox=|2411|0;AS_VarDP=0|72|0;DP=75;QUALapprox=2411;RAW_GT_COUNT=0,0,1;RAW_MQandDP=270000,75;VarDP=72 GT:AD:DP:GQ:PL:SB 1/1:0,72,0:72:99:2411,217,0,2411,217,2411:0,0,37,35 +chrX 1493928 . A . . END=1494201 GT:DP:GQ:MIN_DP:PL 0/0:75:99:75:0,120,1800 +chrX 1494202 . C G, 2058.06 . AS_QUALapprox=|2072|0;AS_VarDP=0|67|0;DP=69;QUALapprox=2072;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=67 GT:AD:DP:GQ:PL:SB 1/1:0,67,0:67:99:2072,200,0,2072,200,2072:0,0,31,36 +chrX 1494203 . A . . END=1494305 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 1494306 . C T, 3752.06 . AS_QUALapprox=|3766|0;AS_VarDP=0|85|0;DP=85;QUALapprox=3766;RAW_GT_COUNT=0,0,1;RAW_MQandDP=306000,85;VarDP=85 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,85,0:85:99:0|1:1494306_C_T:3766,256,0,3766,256,3766:1494306:0,0,32,53 +chrX 1494307 . A . . END=1494309 GT:DP:GQ:MIN_DP:PL 0/0:84:99:84:0,120,1800 +chrX 1494310 . T C, 3750.06 . AS_QUALapprox=|3764|0;AS_VarDP=0|85|0;DP=87;QUALapprox=3764;RAW_GT_COUNT=0,0,1;RAW_MQandDP=313200,87;VarDP=85 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,85,0:85:99:0|1:1494306_C_T:3764,256,0,3764,256,3764:1494306:0,0,33,52 +chrX 1494311 . T . . END=1494527 GT:DP:GQ:MIN_DP:PL 0/0:76:99:76:0,119,1707 +chrX 1494528 . A T, 1643.06 . AS_QUALapprox=|1657|0;AS_VarDP=0|52|0;DP=55;QUALapprox=1657;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1657,155,0,1657,155,1657:0,0,29,23 +chrX 1494529 . G . . END=1494696 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,109,1761 +chrX 1494697 . G A, 1901.06 . AS_QUALapprox=|1915|0;AS_VarDP=0|57|0;DP=59;QUALapprox=1915;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1915,171,0,1915,171,1915:0,0,33,24 +chrX 1494698 . T . . END=1494868 GT:DP:GQ:MIN_DP:PL 0/0:61:93:61:0,93,1314 +chrX 1494869 . A ATT, 818.03 . AS_QUALapprox=|832|0;AS_VarDP=0|26|0;DP=48;QUALapprox=832;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169960,48;VarDP=26 GT:AD:DP:GQ:PL:SB 1/1:0,26,0:26:78:832,78,0,832,78,833:0,0,10,16 +chrX 1494870 . T . . END=1494886 GT:DP:GQ:MIN_DP:PL 0/0:47:23:44:0,23,1100 +chrX 1494887 . A . . END=1494887 GT:DP:GQ:MIN_DP:PL 0/0:45:16:45:0,16,1094 +chrX 1494888 . T . . END=1494963 GT:DP:GQ:MIN_DP:PL 0/0:46:65:46:0,65,1169 +chrX 1494964 . C T, 1599.06 . AS_QUALapprox=|1613|0;AS_VarDP=0|49|0;DP=50;QUALapprox=1613;RAW_GT_COUNT=0,0,1;RAW_MQandDP=177844,50;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1613,146,0,1613,146,1613:0,0,16,33 +chrX 1494965 . G . . END=1495125 GT:DP:GQ:MIN_DP:PL 0/0:53:91:53:0,91,1508 +chrX 1495126 . C T, 1705.06 . AS_QUALapprox=|1719|0;AS_VarDP=0|51|0;DP=54;QUALapprox=1719;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1719,153,0,1719,153,1719:0,0,34,17 +chrX 1495127 . G . . END=1495487 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,101,1478 +chrX 1495488 . A G, 506.64 . AS_QUALapprox=|514|0;AS_VarDP=24|23|0;BaseQRankSum=-2.780;DP=49;MQRankSum=-3.334;QUALapprox=514;RAW_GT_COUNT=0,1,0;RAW_MQandDP=163587,49;ReadPosRankSum=1.235;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:24,23,0:47:99:514,0,674,586,742,1328:4,20,12,11 +chrX 1495489 . T . . END=1495555 GT:DP:GQ:MIN_DP:PL 0/0:41:78:41:0,78,1186 +chrX 1495556 . G C, 139.64 . AS_QUALapprox=|147|0;AS_VarDP=30|9|0;BaseQRankSum=0.267;DP=42;MQRankSum=-2.908;QUALapprox=147;RAW_GT_COUNT=0,1,0;RAW_MQandDP=136755,42;ReadPosRankSum=-2.302;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:30,9,0:39:99:147,0,796,236,822,1058:7,23,4,5 +chrX 1495557 . C . . END=1495598 GT:DP:GQ:MIN_DP:PL 0/0:30:66:30:0,66,809 +chrX 1495599 . T C, 1034.06 . AS_QUALapprox=|1048|0;AS_VarDP=0|25|0;DP=26;QUALapprox=1048;RAW_GT_COUNT=0,0,1;RAW_MQandDP=91849,26;VarDP=25 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,25,0:25:75:0|1:1495599_T_C:1048,75,0,1048,75,1048:1495599:0,0,11,14 +chrX 1495600 . G . . END=1495621 GT:DP:GQ:MIN_DP:PL 0/0:25:63:25:0,63,945 +chrX 1495622 . A G, 1077.06 . AS_QUALapprox=|1091|0;AS_VarDP=0|25|0;DP=25;QUALapprox=1091;RAW_GT_COUNT=0,0,1;RAW_MQandDP=87129,25;VarDP=25 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,25,0:25:75:0|1:1495599_T_C:1091,75,0,1091,75,1091:1495599:0,0,12,13 +chrX 1495623 . T . . END=1495736 GT:DP:GQ:MIN_DP:PL 0/0:25:29:24:0,29,639 +chrX 1495737 . G . . END=1495737 GT:DP:GQ:MIN_DP:PL 0/0:25:6:25:0,6,660 +chrX 1495738 . A . . END=1495790 GT:DP:GQ:MIN_DP:PL 0/0:38:64:38:0,64,883 +chrX 1495791 . C G, 785.64 . AS_QUALapprox=|793|0;AS_VarDP=14|21|0;BaseQRankSum=-1.484;DP=35;MQRankSum=-0.173;QUALapprox=793;RAW_GT_COUNT=0,1,0;RAW_MQandDP=120091,35;ReadPosRankSum=-1.277;VarDP=35 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:14,21,0:35:99:0|1:1495791_C_G:793,0,525,836,588,1423:1495791:10,4,10,11 +chrX 1495792 . C . . END=1495794 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +chrX 1495795 . C T, 786.64 . AS_QUALapprox=|794|0;AS_VarDP=14|21|0;BaseQRankSum=-1.375;DP=35;MQRankSum=-0.173;QUALapprox=794;RAW_GT_COUNT=0,1,0;RAW_MQandDP=120091,35;ReadPosRankSum=-0.636;VarDP=35 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:14,21,0:35:99:0|1:1495791_C_G:794,0,525,836,588,1424:1495791:10,4,11,10 +chrX 1495796 . C . . END=1495799 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1032 +chrX 1495800 . A G, 725.64 . AS_QUALapprox=|733|0;AS_VarDP=14|19|0;BaseQRankSum=-1.193;DP=34;MQRankSum=-0.256;QUALapprox=733;RAW_GT_COUNT=0,1,0;RAW_MQandDP=116491,34;ReadPosRankSum=-1.660;VarDP=33 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:14,19,0:33:99:0|1:1495791_C_G:733,0,531,775,588,1363:1495791:10,4,9,10 +chrX 1495801 . C . . END=1496060 GT:DP:GQ:MIN_DP:PL 0/0:42:38:41:0,38,1055 +chrX 1496061 . T C, 1058.64 . AS_QUALapprox=|1066|0;AS_VarDP=32|41|0;BaseQRankSum=-0.885;DP=75;MQRankSum=0.000;QUALapprox=1066;RAW_GT_COUNT=0,1,0;RAW_MQandDP=270000,75;ReadPosRankSum=2.247;VarDP=73 GT:AD:DP:GQ:PL:SB 0/1:32,41,0:73:99:1066,0,834,1162,956,2118:10,22,19,22 +chrX 1496062 . T . . END=1496221 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 1496222 . C G, 1866.06 . AS_QUALapprox=|1880|0;AS_VarDP=0|56|0;DP=60;QUALapprox=1880;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1880,168,0,1880,168,1880:0,0,25,31 +chrX 1496223 . A . . END=1496302 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 1496303 . A G, 1721.06 . AS_QUALapprox=|1735|0;AS_VarDP=0|54|0;DP=56;QUALapprox=1735;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:1735,161,0,1735,161,1735:0,0,29,25 +chrX 1496304 . G . . END=1496493 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1496494 . A G, 640.64 . AS_QUALapprox=|648|0;AS_VarDP=23|24|0;BaseQRankSum=0.018;DP=54;MQRankSum=0.000;QUALapprox=648;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=-0.884;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:23,24,0:47:99:648,0,629,717,700,1417:13,10,10,14 +chrX 1496495 . C . . END=1496602 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,101,1269 +chrX 1496603 . A G, 654.64 . AS_QUALapprox=|662|0;AS_VarDP=24|25|0;BaseQRankSum=-2.518;DP=53;MQRankSum=0.000;QUALapprox=662;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=-0.590;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:24,25,0:49:99:662,0,687,734,762,1496:7,17,7,18 +chrX 1496604 . T . . END=1496643 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 1496644 . G A, 1848.06 . AS_QUALapprox=|1862|0;AS_VarDP=0|50|0;DP=55;QUALapprox=1862;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1862,150,0,1862,150,1862:0,0,16,34 +chrX 1496645 . T . . END=1496654 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 1496655 . T A, 566.64 . AS_QUALapprox=|574|0;AS_VarDP=27|23|0;BaseQRankSum=-0.027;DP=60;MQRankSum=0.000;QUALapprox=574;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=1.373;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:27,23,0:50:99:574,0,729,655,797,1452:9,18,6,17 +chrX 1496656 . T . . END=1496764 GT:DP:GQ:MIN_DP:PL 0/0:42:84:42:0,84,1103 +chrX 1496765 . T A, 241.64 . AS_QUALapprox=|249|0;AS_VarDP=9|9|0;BaseQRankSum=-0.674;DP=32;MQRankSum=0.000;QUALapprox=249;RAW_GT_COUNT=0,1,0;RAW_MQandDP=114001,32;ReadPosRankSum=0.129;VarDP=18 GT:AD:DP:GQ:PL:SB 0/1:9,9,0:18:99:249,0,259,276,286,561:0,9,0,9 +chrX 1496766 . C . . END=1496789 GT:DP:GQ:MIN_DP:PL 0/0:15:27:12:0,27,405 +chrX 1496790 . C . . END=1496852 GT:DP:GQ:MIN_DP:PL 0/0:3:0:3:0,0,0 +chrX 1496853 . C . . END=1496870 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,243 +chrX 1496871 . A . . END=1496874 GT:DP:GQ:MIN_DP:PL 0/0:9:18:9:0,18,270 +chrX 1496875 . T . . END=1496900 GT:DP:GQ:MIN_DP:PL 0/0:10:21:9:0,21,258 +chrX 1496901 . G A, 403.06 . AS_QUALapprox=|417|0;AS_VarDP=0|12|0;DP=21;QUALapprox=417;RAW_GT_COUNT=0,0,1;RAW_MQandDP=72576,21;VarDP=12 GT:AD:DP:GQ:PL:SB 1/1:0,12,0:12:36:417,36,0,417,36,417:0,0,12,0 +chrX 1496902 . C . . END=1496969 GT:DP:GQ:MIN_DP:PL 0/0:15:34:12:0,34,417 +chrX 1496970 . G A, 338.64 . AS_QUALapprox=|346|0;AS_VarDP=17|15|0;BaseQRankSum=-0.324;DP=40;MQRankSum=1.717;QUALapprox=346;RAW_GT_COUNT=0,1,0;RAW_MQandDP=138991,40;ReadPosRankSum=-1.115;VarDP=32 GT:AD:DP:GQ:PL:SB 0/1:17,15,0:32:99:346,0,422,397,466,863:13,4,13,2 +chrX 1496971 . C . . END=1497046 GT:DP:GQ:MIN_DP:PL 0/0:38:71:38:0,71,1012 +chrX 1497047 . T C, 1737.06 . AS_QUALapprox=|1751|0;AS_VarDP=0|40|0;DP=46;QUALapprox=1751;RAW_GT_COUNT=0,0,1;RAW_MQandDP=161790,46;VarDP=40 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,40,0:40:99:0|1:1497047_T_C:1751,120,0,1751,120,1751:1497047:0,0,30,10 +chrX 1497048 . G A, 1737.06 . AS_QUALapprox=|1751|0;AS_VarDP=0|40|0;DP=47;QUALapprox=1751;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165390,47;VarDP=40 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,40,0:40:99:0|1:1497047_T_C:1751,120,0,1751,120,1751:1497047:0,0,30,10 +chrX 1497049 . T . . END=1497195 GT:DP:GQ:MIN_DP:PL 0/0:41:71:41:0,71,973 +chrX 1497196 . T . . END=1497196 GT:DP:GQ:MIN_DP:PL 0/0:29:18:29:0,18,849 +chrX 1497197 . G . . END=1497218 GT:DP:GQ:MIN_DP:PL 0/0:31:20:28:0,20,745 +chrX 1497219 . C . . END=1497220 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,538 +chrX 1497221 . C CA,CAA, 705.02 . AS_QUALapprox=|504|491|0;AS_VarDP=0|13|15|0;DP=41;QUALapprox=722;RAW_GT_COUNT=0,0,1;RAW_MQandDP=137140,41;VarDP=28 GT:AD:DP:GQ:PL:SB 1/2:0,13,15,0:28:99:722,299,218,281,0,231,658,288,280,626:0,0,7,21 +chrX 1497222 . A . . END=1497236 GT:DP:GQ:MIN_DP:PL 0/0:40:90:40:0,90,1350 +chrX 1497237 . G . . END=1497237 GT:DP:GQ:MIN_DP:PL 0/0:37:7:37:0,7,997 +chrX 1497238 . A . . END=1497528 GT:DP:GQ:MIN_DP:PL 0/0:43:31:40:0,31,1053 +chrX 1497529 . G A, 622.64 . AS_QUALapprox=|630|0;AS_VarDP=35|25|0;BaseQRankSum=0.516;DP=60;MQRankSum=0.000;QUALapprox=630;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=-0.150;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:35,25,0:60:99:630,0,907,734,982,1716:17,18,10,15 +chrX 1497530 . T . . END=1497601 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 1497602 . G A, 921.64 . AS_QUALapprox=|929|0;AS_VarDP=23|33|0;BaseQRankSum=1.371;DP=56;MQRankSum=0.000;QUALapprox=929;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=0.517;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:23,33,0:56:99:929,0,561,998,660,1658:6,17,17,16 +chrX 1497603 . A . . END=1497638 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1497639 . C CAA, 693.60 . AS_QUALapprox=|701|0;AS_VarDP=32|19|0;BaseQRankSum=0.803;DP=56;MQRankSum=-1.257;QUALapprox=701;RAW_GT_COUNT=0,1,0;RAW_MQandDP=199600,56;ReadPosRankSum=0.682;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:32,19,0:51:99:701,0,1234,798,1291,2089:17,15,3,16 +chrX 1497640 . G . . END=1497655 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,102,1530 +chrX 1497656 . A AAAAT, 522.60 . AS_QUALapprox=|530|0;AS_VarDP=19|14|0;BaseQRankSum=1.464;DP=47;MQRankSum=0.000;QUALapprox=530;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=0.328;VarDP=33 GT:AD:DP:GQ:PL:SB 0/1:19,14,0:33:99:530,0,756,588,798,1386:12,7,5,9 +chrX 1497657 . A . . END=1498277 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1498278 . T C, 2167.06 . AS_QUALapprox=|2181|0;AS_VarDP=0|52|0;DP=58;QUALapprox=2181;RAW_GT_COUNT=0,0,1;RAW_MQandDP=179634,58;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,52,0:52:99:0|1:1498278_T_C:2181,156,0,2181,156,2181:1498278:0,0,20,32 +chrX 1498279 . G . . END=1498301 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,99,1485 +chrX 1498302 . A G, 1865.06 . AS_QUALapprox=|1879|0;AS_VarDP=0|42|0;DP=46;QUALapprox=1879;RAW_GT_COUNT=0,0,1;RAW_MQandDP=134355,46;VarDP=42 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,42,0:42:99:0|1:1498278_T_C:1879,126,0,1879,126,1879:1498278:0,0,14,28 +chrX 1498303 . G . . END=1498329 GT:DP:GQ:MIN_DP:PL 0/0:34:72:34:0,72,1080 +chrX 1498330 . T C, 450.64 . AS_QUALapprox=|458|0;AS_VarDP=18|14|0;BaseQRankSum=-2.996;DP=35;MQRankSum=-0.264;QUALapprox=458;RAW_GT_COUNT=0,1,0;RAW_MQandDP=90836,35;ReadPosRankSum=-0.323;VarDP=32 GT:AD:DP:GQ:PL:SB 0/1:18,14,0:32:99:458,0,693,512,735,1248:7,11,4,10 +chrX 1498331 . G . . END=1498336 GT:DP:GQ:MIN_DP:PL 0/0:29:63:29:0,63,945 +chrX 1498337 . C T, 577.64 . AS_QUALapprox=|585|0;AS_VarDP=12|16|0;BaseQRankSum=1.523;DP=30;MQRankSum=0.424;QUALapprox=585;RAW_GT_COUNT=0,1,0;RAW_MQandDP=74874,30;ReadPosRankSum=-0.074;VarDP=28 GT:AD:DP:GQ:PL:SB 0/1:12,16,0:28:99:585,0,432,621,480,1101:2,10,6,10 +chrX 1498338 . G . . END=1498354 GT:DP:GQ:MIN_DP:PL 0/0:25:63:25:0,63,745 +chrX 1498355 . G A, 1111.06 . AS_QUALapprox=|1125|0;AS_VarDP=0|25|0;DP=26;QUALapprox=1125;RAW_GT_COUNT=0,0,1;RAW_MQandDP=57702,26;VarDP=25 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,25,0:25:75:0|1:1498355_G_A:1125,75,0,1125,75,1125:1498355:0,0,11,14 +chrX 1498356 . A . . END=1498367 GT:DP:GQ:MIN_DP:PL 0/0:23:60:23:0,60,900 +chrX 1498368 . T C, 1001.06 . AS_QUALapprox=|1015|0;AS_VarDP=0|23|0;DP=23;QUALapprox=1015;RAW_GT_COUNT=0,0,1;RAW_MQandDP=50453,23;VarDP=23 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,23,0:23:69:0|1:1498355_G_A:1015,69,0,1015,69,1015:1498355:0,0,12,11 +chrX 1498369 . G . . END=1498399 GT:DP:GQ:MIN_DP:PL 0/0:26:60:26:0,60,665 +chrX 1498400 . T C, 937.06 . AS_QUALapprox=|951|0;AS_VarDP=0|26|0;DP=28;QUALapprox=951;RAW_GT_COUNT=0,0,1;RAW_MQandDP=81324,28;VarDP=26 GT:AD:DP:GQ:PL:SB 1/1:0,26,0:26:78:951,78,0,951,78,951:0,0,18,8 +chrX 1498401 . G . . END=1498404 GT:DP:GQ:MIN_DP:PL 0/0:26:56:26:0,56,715 +chrX 1498405 . C CA, 221.60 . AS_QUALapprox=|229|0;AS_VarDP=16|17|0;BaseQRankSum=0.403;DP=48;MQRankSum=-1.634;QUALapprox=229;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151324,48;ReadPosRankSum=1.301;VarDP=33 GT:AD:DP:GQ:PL:SB 0/1:16,17,0:33:99:229,0,246,277,295,572:10,6,12,5 +chrX 1498406 . A . . END=1498521 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 1498522 . AT A, 952.60 . AS_QUALapprox=|960|0;AS_VarDP=29|28|0;BaseQRankSum=-0.850;DP=65;MQRankSum=0.000;QUALapprox=960;RAW_GT_COUNT=0,1,0;RAW_MQandDP=231556,65;ReadPosRankSum=-1.196;VarDP=57 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,28,0:57:99:0|1:1498522_AT_A:960,0,1009,1048,1094,2141:1498522:17,12,16,12 +chrX 1498524 . T . . END=1498539 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1498540 . G A, 928.64 . AS_QUALapprox=|936|0;AS_VarDP=36|27|0;BaseQRankSum=1.481;DP=66;MQRankSum=0.000;QUALapprox=936;RAW_GT_COUNT=0,1,0;RAW_MQandDP=235156,66;ReadPosRankSum=0.765;VarDP=63 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:36,27,0:63:99:0|1:1498522_AT_A:936,0,1200,1044,1281,2325:1498522:20,16,15,12 +chrX 1498541 . G . . END=1498565 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1498566 . A G, 438.64 . AS_QUALapprox=|446|0;AS_VarDP=36|19|0;BaseQRankSum=1.913;DP=58;MQRankSum=0.000;QUALapprox=446;RAW_GT_COUNT=0,1,0;RAW_MQandDP=206356,58;ReadPosRankSum=1.470;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:36,19,0:55:99:446,0,881,553,938,1491:14,22,11,8 +chrX 1498567 . G . . END=1498707 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,107,1629 +chrX 1498708 . C G, 637.64 . AS_QUALapprox=|645|0;AS_VarDP=19|26|0;BaseQRankSum=-0.405;DP=50;MQRankSum=-1.190;QUALapprox=645;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176949,50;ReadPosRankSum=1.862;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:19,26,0:45:99:645,0,460,701,537,1238:11,8,15,11 +chrX 1498709 . G . . END=1498947 GT:DP:GQ:MIN_DP:PL 0/0:57:56:57:0,56,1458 +chrX 1498948 . C T, 837.64 . AS_QUALapprox=|845|0;AS_VarDP=26|31|0;BaseQRankSum=-1.661;DP=58;MQRankSum=0.000;QUALapprox=845;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=1.787;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:26,31,0:57:99:845,0,706,923,799,1722:4,22,19,12 +chrX 1498949 . C . . END=1499021 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1499022 . A G, 844.64 . AS_QUALapprox=|852|0;AS_VarDP=21|34|0;BaseQRankSum=-2.036;DP=58;MQRankSum=1.310;QUALapprox=852;RAW_GT_COUNT=0,1,0;RAW_MQandDP=206800,58;ReadPosRankSum=-1.049;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:21,34,0:55:99:852,0,530,915,631,1546:12,9,17,17 +chrX 1499023 . C . . END=1499112 GT:DP:GQ:MIN_DP:PL 0/0:59:89:59:0,89,1618 +chrX 1499113 . A G, 1018.64 . AS_QUALapprox=|1026|0;AS_VarDP=17|38|0;BaseQRankSum=-1.126;DP=57;MQRankSum=0.000;QUALapprox=1026;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=0.264;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:17,38,0:55:99:1026,0,391,1077,504,1581:15,2,17,21 +chrX 1499114 . T . . END=1499160 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 1499161 . TTC T, 1228.60 . AS_QUALapprox=|1236|0;AS_VarDP=25|33|0;BaseQRankSum=2.587;DP=60;MQRankSum=1.323;QUALapprox=1236;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208609,60;ReadPosRankSum=0.050;VarDP=58 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,33,0:58:99:0|1:1499161_TTC_T:1236,0,931,1311,1030,2341:1499161:20,5,18,15 +chrX 1499164 . T . . END=1499164 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,108,1620 +chrX 1499165 . T G, 1228.64 . AS_QUALapprox=|1236|0;AS_VarDP=25|33|0;BaseQRankSum=0.583;DP=59;MQRankSum=1.323;QUALapprox=1236;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205009,59;ReadPosRankSum=-0.471;VarDP=58 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,33,0:58:99:0|1:1499161_TTC_T:1236,0,931,1311,1030,2341:1499161:20,5,18,15 +chrX 1499166 . T . . END=1499167 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,111,1665 +chrX 1499168 . T C, 1196.64 . AS_QUALapprox=|1204|0;AS_VarDP=25|32|0;BaseQRankSum=0.995;DP=58;MQRankSum=1.290;QUALapprox=1204;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201409,58;ReadPosRankSum=-0.289;VarDP=57 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,32,0:57:99:0|1:1499161_TTC_T:1204,0,934,1280,1030,2310:1499161:20,5,18,14 +chrX 1499169 . T . . END=1499198 GT:DP:GQ:MIN_DP:PL 0/0:50:68:50:0,68,1120 +chrX 1499199 . G . . END=1499199 GT:DP:GQ:MIN_DP:PL 0/0:52:8:52:0,8,1063 +chrX 1499200 . T . . END=1499509 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1499510 . T C, 886.64 . AS_QUALapprox=|894|0;AS_VarDP=33|36|0;BaseQRankSum=-2.095;DP=72;MQRankSum=0.000;QUALapprox=894;RAW_GT_COUNT=0,1,0;RAW_MQandDP=259200,72;ReadPosRankSum=-1.713;VarDP=69 GT:AD:DP:GQ:PL:SB 0/1:33,36,0:69:99:894,0,880,993,988,1981:14,19,17,19 +chrX 1499511 . G . . END=1499546 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 1499547 . T A, 791.64 . AS_QUALapprox=|799|0;AS_VarDP=31|31|0;BaseQRankSum=-0.482;DP=66;MQRankSum=0.000;QUALapprox=799;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=-1.472;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:31,31,0:62:99:799,0,806,892,900,1791:12,19,13,18 +chrX 1499548 . A . . END=1499943 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 1499944 . C T, 835.64 . AS_QUALapprox=|843|0;AS_VarDP=38|24|0;BaseQRankSum=2.543;DP=66;MQRankSum=-2.903;QUALapprox=843;RAW_GT_COUNT=0,1,0;RAW_MQandDP=217843,66;ReadPosRankSum=-0.441;VarDP=62 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:38,24,0:62:99:0|1:1499944_C_T:843,0,1435,957,1507,2464:1499944:21,17,15,9 +chrX 1499945 . G . . END=1499957 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1499958 . C A, 794.64 . AS_QUALapprox=|802|0;AS_VarDP=37|22|0;BaseQRankSum=1.576;DP=63;MQRankSum=-3.016;QUALapprox=802;RAW_GT_COUNT=0,1,0;RAW_MQandDP=207043,63;ReadPosRankSum=-1.101;VarDP=59 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:37,22,0:59:99:0|1:1499944_C_T:802,0,1460,914,1526,2440:1499944:22,15,14,8 +chrX 1499959 . C T, 794.64 . AS_QUALapprox=|802|0;AS_VarDP=37|22|0;BaseQRankSum=1.804;DP=63;MQRankSum=-3.016;QUALapprox=802;RAW_GT_COUNT=0,1,0;RAW_MQandDP=207043,63;ReadPosRankSum=-1.448;VarDP=59 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:37,22,0:59:99:0|1:1499944_C_T:802,0,1460,914,1526,2440:1499944:22,15,14,8 +chrX 1499960 . G . . END=1499965 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 1499966 . C G, 678.64 . AS_QUALapprox=|686|0;AS_VarDP=37|19|0;BaseQRankSum=0.506;DP=61;MQRankSum=-3.299;QUALapprox=686;RAW_GT_COUNT=0,1,0;RAW_MQandDP=199843,61;ReadPosRankSum=-1.020;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:37,19,0:56:99:0|1:1499944_C_T:686,0,1449,798,1506,2304:1499944:21,16,12,7 +chrX 1499967 . T . . END=1499996 GT:DP:GQ:MIN_DP:PL 0/0:48:90:48:0,90,1350 +chrX 1499997 . T C, 246.64 . AS_QUALapprox=|254|0;AS_VarDP=34|9|0;BaseQRankSum=-1.154;DP=47;MQRankSum=-4.413;QUALapprox=254;RAW_GT_COUNT=0,1,0;RAW_MQandDP=148835,47;ReadPosRankSum=-2.346;VarDP=43 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:34,9,0:43:99:0|1:1499997_T_C:254,0,1350,356,1377,1733:1499997:23,11,7,2 +chrX 1499998 . A . . END=1500002 GT:DP:GQ:MIN_DP:PL 0/0:41:93:41:0,93,1395 +chrX 1500003 . CGTGT C, 254.60 . AS_QUALapprox=|262|0;AS_VarDP=35|9|0;BaseQRankSum=1.056;DP=45;MQRankSum=-5.019;QUALapprox=262;RAW_GT_COUNT=0,1,0;RAW_MQandDP=145039,45;ReadPosRankSum=-2.914;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:35,9,0:44:99:0|1:1499997_T_C:262,0,1422,368,1449,1817:1499997:23,12,7,2 +chrX 1500007 . T TACCC, 187.60 . AS_QUALapprox=|195|0;AS_VarDP=33|7|0;BaseQRankSum=0.365;DP=41;MQRankSum=-5.606;QUALapprox=195;RAW_GT_COUNT=0,1,0;RAW_MQandDP=130639,41;ReadPosRankSum=-3.125;VarDP=40 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:33,7,0:40:99:0|1:1499997_T_C:195,0,1365,294,1386,1680:1499997:21,12,5,2 +chrX 1500008 . A . . END=1500014 GT:DP:GQ:MIN_DP:PL 0/0:36:67:36:0,67,1072 +chrX 1500015 . T C, 58.64 . AS_QUALapprox=|66|0;AS_VarDP=34|4|0;BaseQRankSum=0.799;DP=39;MQRankSum=-5.387;QUALapprox=66;RAW_GT_COUNT=0,1,0;RAW_MQandDP=126641,39;ReadPosRankSum=-2.181;VarDP=38 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:34,4,0:38:66:0|1:1499997_T_C:66,0,1416,168,1428,1596:1499997:20,14,4,0 +chrX 1500016 . G . . END=1500018 GT:DP:GQ:MIN_DP:PL 0/0:36:73:36:0,73,1091 +chrX 1500019 . C T, 61.64 . AS_QUALapprox=|69|0;AS_VarDP=33|4|0;BaseQRankSum=0.992;DP=40;MQRankSum=-5.312;QUALapprox=69;RAW_GT_COUNT=0,1,0;RAW_MQandDP=128241,40;ReadPosRankSum=-2.076;VarDP=37 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:33,4,0:37:69:0|1:1499997_T_C:69,0,1374,168,1386,1554:1499997:19,14,4,0 +chrX 1500020 . A G, 61.64 . AS_QUALapprox=|69|0;AS_VarDP=33|4|0;BaseQRankSum=-0.224;DP=40;MQRankSum=-5.312;QUALapprox=69;RAW_GT_COUNT=0,1,0;RAW_MQandDP=128241,40;ReadPosRankSum=-2.102;VarDP=37 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:33,4,0:37:69:0|1:1499997_T_C:69,0,1374,168,1386,1554:1499997:19,14,4,0 +chrX 1500021 . G . . END=1500059 GT:DP:GQ:MIN_DP:PL 0/0:36:36:35:0,36,997 +chrX 1500060 . G A, 197.64 . AS_QUALapprox=|205|0;AS_VarDP=33|10|0;BaseQRankSum=1.735;DP=50;MQRankSum=-3.267;QUALapprox=205;RAW_GT_COUNT=0,1,0;RAW_MQandDP=155021,50;ReadPosRankSum=-1.308;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:33,10,0:43:99:205,0,887,305,917,1222:19,14,7,3 +chrX 1500061 . T . . END=1500147 GT:DP:GQ:MIN_DP:PL 0/0:65:75:65:0,75,1354 +chrX 1500148 . G A, 1117.64 . AS_QUALapprox=|1125|0;AS_VarDP=38|30|0;BaseQRankSum=-0.955;DP=80;MQRankSum=-2.936;QUALapprox=1125;RAW_GT_COUNT=0,1,0;RAW_MQandDP=265835,80;ReadPosRankSum=1.189;VarDP=68 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:38,30,0:68:99:0|1:1500148_G_A:1125,0,1489,1239,1579,2818:1500148:15,23,13,17 +chrX 1500149 . C . . END=1500152 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1500153 . C A, 1101.64 . AS_QUALapprox=|1109|0;AS_VarDP=40|30|0;BaseQRankSum=0.404;DP=79;MQRankSum=-2.739;QUALapprox=1109;RAW_GT_COUNT=0,1,0;RAW_MQandDP=266679,79;ReadPosRankSum=1.426;VarDP=70 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:40,30,0:70:99:0|1:1500148_G_A:1109,0,1553,1229,1643,2872:1500148:16,24,13,17 +chrX 1500154 . G . . END=1500161 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 1500162 . G T, 1073.64 . AS_QUALapprox=|1081|0;AS_VarDP=39|30|0;BaseQRankSum=-1.363;DP=79;MQRankSum=-2.081;QUALapprox=1081;RAW_GT_COUNT=0,1,0;RAW_MQandDP=270430,79;ReadPosRankSum=0.358;VarDP=69 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:39,30,0:69:99:0|1:1500148_G_A:1081,0,1500,1199,1591,2789:1500148:16,23,13,17 +chrX 1500163 . T . . END=1500615 GT:DP:GQ:MIN_DP:PL 0/0:73:26:58:0,26,1414 +chrX 1500616 . TG T, 1045.60 . AS_QUALapprox=|1053|0;AS_VarDP=23|31|0;BaseQRankSum=-1.984;DP=55;MQRankSum=-0.824;QUALapprox=1053;RAW_GT_COUNT=0,1,0;RAW_MQandDP=197316,55;ReadPosRankSum=0.079;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:23,31,0:54:99:1053,0,767,1122,860,1983:11,12,15,16 +chrX 1500618 . T . . END=1501257 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,107,1558 +chrX 1501258 . T G, 905.64 . AS_QUALapprox=|913|0;AS_VarDP=32|34|0;BaseQRankSum=0.433;DP=70;MQRankSum=0.000;QUALapprox=913;RAW_GT_COUNT=0,1,0;RAW_MQandDP=252000,70;ReadPosRankSum=2.086;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:32,34,0:66:99:913,0,834,1009,936,1946:18,14,17,17 +chrX 1501259 . C . . END=1501592 GT:DP:GQ:MIN_DP:PL 0/0:57:79:57:0,79,1141 +chrX 1501593 . T A, 1215.06 . AS_QUALapprox=|1229|0;AS_VarDP=0|37|0;DP=37;QUALapprox=1229;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133200,37;VarDP=37 GT:AD:DP:GQ:PL:SB 1/1:0,37,0:37:99:1229,111,0,1229,111,1229:0,0,24,13 +chrX 1501594 . T . . END=1501943 GT:DP:GQ:MIN_DP:PL 0/0:52:52:52:0,52,1122 +chrX 1501944 . T C, 758.64 . AS_QUALapprox=|766|0;AS_VarDP=27|31|0;BaseQRankSum=-2.037;DP=61;MQRankSum=0.000;QUALapprox=766;RAW_GT_COUNT=0,1,0;RAW_MQandDP=217936,61;ReadPosRankSum=-0.156;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:27,31,0:58:99:766,0,725,847,817,1665:19,8,20,11 +chrX 1501945 . C . . END=1502068 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 1502069 . T C, 2560.06 . AS_QUALapprox=|2574|0;AS_VarDP=0|71|0;DP=71;QUALapprox=2574;RAW_GT_COUNT=0,0,1;RAW_MQandDP=253875,71;VarDP=71 GT:AD:DP:GQ:PL:SB 1/1:0,71,0:71:99:2574,213,0,2574,213,2574:0,0,35,36 +chrX 1502070 . C . . END=1502087 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 1502088 . A T, 713.64 . AS_QUALapprox=|721|0;AS_VarDP=36|28|0;BaseQRankSum=0.437;DP=68;MQRankSum=-0.795;QUALapprox=721;RAW_GT_COUNT=0,1,0;RAW_MQandDP=243075,68;ReadPosRankSum=-0.440;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:36,28,0:64:99:721,0,987,830,1071,1901:17,19,11,17 +chrX 1502089 . T . . END=1502157 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 1502158 . A G, 865.64 . AS_QUALapprox=|873|0;AS_VarDP=37|33|0;BaseQRankSum=0.696;DP=72;MQRankSum=-1.141;QUALapprox=873;RAW_GT_COUNT=0,1,0;RAW_MQandDP=255475,72;ReadPosRankSum=0.330;VarDP=70 GT:AD:DP:GQ:PL:SB 0/1:37,33,0:70:99:873,0,967,983,1065,2048:20,17,15,18 +chrX 1502159 . C . . END=1502485 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 1502486 . A T, 742.64 . AS_QUALapprox=|750|0;AS_VarDP=28|28|0;BaseQRankSum=-0.871;DP=58;MQRankSum=0.000;QUALapprox=750;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=0.812;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:28,28,0:56:99:750,0,785,834,869,1704:15,13,9,19 +chrX 1502487 . C . . END=1502816 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,99,1413 +chrX 1502817 . A G, 1808.64 . AS_QUALapprox=|1816|0;AS_VarDP=7|45|0;BaseQRankSum=3.981;DP=53;MQRankSum=-1.508;QUALapprox=1816;RAW_GT_COUNT=0,1,0;RAW_MQandDP=171661,53;ReadPosRankSum=-0.215;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:7,45,0:52:99:0|1:1502817_A_G:1816,0,158,1837,294,2131:1502817:4,3,27,18 +chrX 1502818 . C . . END=1502822 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 1502823 . C A, 1831.64 . AS_QUALapprox=|1839|0;AS_VarDP=7|45|0;BaseQRankSum=2.604;DP=52;MQRankSum=-1.508;QUALapprox=1839;RAW_GT_COUNT=0,1,0;RAW_MQandDP=168061,52;ReadPosRankSum=0.479;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:7,45,0:52:99:0|1:1502817_A_G:1839,0,158,1860,294,2154:1502817:4,3,26,19 +chrX 1502824 . C . . END=1502828 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 1502829 . A G, 1841.64 . AS_QUALapprox=|1849|0;AS_VarDP=7|45|0;BaseQRankSum=2.469;DP=52;MQRankSum=-1.508;QUALapprox=1849;RAW_GT_COUNT=0,1,0;RAW_MQandDP=168061,52;ReadPosRankSum=0.641;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:7,45,0:52:99:0|1:1502817_A_G:1849,0,158,1870,294,2164:1502817:4,3,24,21 +chrX 1502830 . T . . END=1502832 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,120,1800 +chrX 1502833 . C T, 1802.64 . AS_QUALapprox=|1810|0;AS_VarDP=6|44|0;BaseQRankSum=1.997;DP=50;MQRankSum=-1.339;QUALapprox=1810;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162861,50;ReadPosRankSum=0.926;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:6,44,0:50:99:0|1:1502817_A_G:1810,0,120,1828,252,2080:1502817:4,2,24,20 +chrX 1502834 . G . . END=1502841 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,105,1470 +chrX 1502842 . A G, 1851.64 . AS_QUALapprox=|1859|0;AS_VarDP=4|46|0;BaseQRankSum=1.735;DP=50;MQRankSum=-1.182;QUALapprox=1859;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158127,50;ReadPosRankSum=1.180;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:4,46,0:50:30:0|1:1502817_A_G:1859,0,30,1871,168,2039:1502817:3,1,26,20 +chrX 1502843 . A . . END=1503098 GT:DP:GQ:MIN_DP:PL 0/0:62:94:62:0,94,1628 +chrX 1503099 . A . . END=1503099 GT:DP:GQ:MIN_DP:PL 0/0:56:10:56:0,10,1459 +chrX 1503100 . A . . END=1503404 GT:DP:GQ:MIN_DP:PL 0/0:66:90:66:0,90,1553 +chrX 1503405 . A G, 2229.06 . AS_QUALapprox=|2243|0;AS_VarDP=0|69|0;DP=70;QUALapprox=2243;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;VarDP=69 GT:AD:DP:GQ:PL:SB 1/1:0,69,0:69:99:2243,206,0,2243,206,2243:0,0,37,32 +chrX 1503406 . C . . END=1503858 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 1503859 . T A, 839.64 . AS_QUALapprox=|847|0;AS_VarDP=30|32|0;BaseQRankSum=0.676;DP=65;MQRankSum=1.496;QUALapprox=847;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230425,65;ReadPosRankSum=2.043;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:30,32,0:62:99:847,0,772,937,868,1804:15,15,9,23 +chrX 1503860 . A . . END=1504109 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 1504110 . A G, 2005.06 . AS_QUALapprox=|2019|0;AS_VarDP=0|61|0;DP=65;QUALapprox=2019;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=61 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:2019,183,0,2019,183,2019:0,0,35,26 +chrX 1504111 . T . . END=1504208 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 1504209 . G A, 676.64 . AS_QUALapprox=|684|0;AS_VarDP=30|25|0;BaseQRankSum=0.672;DP=56;MQRankSum=0.000;QUALapprox=684;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198400,56;ReadPosRankSum=-0.118;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:30,25,0:55:99:684,0,823,774,898,1672:13,17,11,14 +chrX 1504210 . G . . END=1504314 GT:DP:GQ:MIN_DP:PL 0/0:67:97:67:0,97,1564 +chrX 1504315 . C CA, 360.60 . AS_QUALapprox=|368|0;AS_VarDP=27|20|0;BaseQRankSum=-0.587;DP=65;MQRankSum=0.000;QUALapprox=368;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=-0.140;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:27,20,0:47:99:368,0,613,449,673,1122:6,21,12,8 +chrX 1504316 . A . . END=1504523 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 1504524 . G A, 781.64 . AS_QUALapprox=|789|0;AS_VarDP=34|29|0;BaseQRankSum=0.190;DP=66;MQRankSum=0.000;QUALapprox=789;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=-0.048;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:34,29,0:63:99:789,0,952,891,1040,1930:23,11,18,11 +chrX 1504525 . G . . END=1504640 GT:DP:GQ:MIN_DP:PL 0/0:73:81:73:0,81,1800 +chrX 1504641 . T C, 655.64 . AS_QUALapprox=|663|0;AS_VarDP=35|27|0;BaseQRankSum=-0.547;DP=69;MQRankSum=0.000;QUALapprox=663;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=-0.419;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:35,27,0:62:99:663,0,956,768,1037,1804:14,21,13,14 +chrX 1504642 . A . . END=1504706 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 1504707 . T C, 1671.06 . AS_QUALapprox=|1685|0;AS_VarDP=0|54|0;DP=57;QUALapprox=1685;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205081,57;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:1685,161,0,1685,161,1685:0,0,26,28 +chrX 1504708 . C . . END=1504902 GT:DP:GQ:MIN_DP:PL 0/0:58:76:58:0,76,1345 +chrX 1504903 . C T, 741.64 . AS_QUALapprox=|749|0;AS_VarDP=44|32|0;BaseQRankSum=-0.509;DP=78;MQRankSum=-0.826;QUALapprox=749;RAW_GT_COUNT=0,1,0;RAW_MQandDP=275265,78;ReadPosRankSum=-0.553;VarDP=76 GT:AD:DP:GQ:PL:SB 0/1:44,32,0:76:99:749,0,1140,881,1235,2116:21,23,15,17 +chrX 1504904 . G . . END=1505006 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,120,1800 +chrX 1505007 . A G, 823.64 . AS_QUALapprox=|831|0;AS_VarDP=26|31|0;BaseQRankSum=0.669;DP=58;MQRankSum=-0.414;QUALapprox=831;RAW_GT_COUNT=0,1,0;RAW_MQandDP=206330,58;ReadPosRankSum=0.289;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:26,31,0:57:99:831,0,648,908,741,1649:15,11,13,18 +chrX 1505008 . G . . END=1505053 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 1505054 . C T, 698.64 . AS_QUALapprox=|706|0;AS_VarDP=24|27|0;BaseQRankSum=0.331;DP=51;MQRankSum=-0.463;QUALapprox=706;RAW_GT_COUNT=0,1,0;RAW_MQandDP=181130,51;ReadPosRankSum=0.217;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:24,27,0:51:99:706,0,577,777,658,1435:10,14,14,13 +chrX 1505055 . G . . END=1505136 GT:DP:GQ:MIN_DP:PL 0/0:43:78:43:0,78,1170 +chrX 1505137 . C CA,CAAAAAAA, 1148.02 . AS_QUALapprox=|481|793|0;AS_VarDP=0|16|18|0;DP=50;QUALapprox=1165;RAW_GT_COUNT=0,0,1;RAW_MQandDP=170397,50;VarDP=34 GT:AD:DP:GQ:PL:SB 1/2:0,16,18,0:34:99:1165,748,684,372,0,603,1161,747,539,1277:0,0,16,18 +chrX 1505138 . A . . END=1505413 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,100,1384 +chrX 1505414 . A G, 1734.06 . AS_QUALapprox=|1748|0;AS_VarDP=0|57|0;DP=58;QUALapprox=1748;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1748,170,0,1748,170,1748:0,0,31,26 +chrX 1505415 . G . . END=1505525 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 1505526 . C A, 2263.06 . AS_QUALapprox=|2277|0;AS_VarDP=0|70|0;DP=73;QUALapprox=2277;RAW_GT_COUNT=0,0,1;RAW_MQandDP=261325,73;VarDP=70 GT:AD:DP:GQ:PL:SB 1/1:0,70,0:70:99:2277,210,0,2277,210,2277:0,0,37,33 +chrX 1505527 . G . . END=1505643 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,120,1800 +chrX 1505644 . G A, 1875.06 . AS_QUALapprox=|1889|0;AS_VarDP=1|59|0;BaseQRankSum=2.334;DP=65;MQRankSum=0.000;QUALapprox=1889;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;ReadPosRankSum=-1.617;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:1,59,0:60:99:1889,170,0,1891,176,1898:0,1,35,24 +chrX 1505645 . C . . END=1505666 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 1505667 . G A, 2031.06 . AS_QUALapprox=|2045|0;AS_VarDP=0|62|0;DP=64;QUALapprox=2045;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:0,62,0:62:99:2045,186,0,2045,186,2045:0,0,35,27 +chrX 1505668 . T . . END=1505854 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 1505855 . G A, 2078.06 . AS_QUALapprox=|2092|0;AS_VarDP=0|65|0;DP=69;QUALapprox=2092;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=65 GT:AD:DP:GQ:PL:SB 1/1:0,65,0:65:99:2092,195,0,2092,195,2092:0,0,27,38 +chrX 1505856 . T . . END=1505986 GT:DP:GQ:MIN_DP:PL 0/0:61:98:61:0,98,1369 +chrX 1505987 . CTT C, 474.77 . AS_QUALapprox=|482|0;AS_VarDP=3|19|0;BaseQRankSum=0.000;DP=51;MQRankSum=-0.265;QUALapprox=482;RAW_GT_COUNT=0,1,0;RAW_MQandDP=177600,51;ReadPosRankSum=0.383;VarDP=22 GT:AD:DP:GQ:PL:SB 0/1:3,19,0:22:4:482,0,4,492,61,553:3,0,6,13 +chrX 1505990 . T . . END=1506009 GT:DP:GQ:MIN_DP:PL 0/0:49:25:43:0,25,1125 +chrX 1506010 . T . . END=1506011 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,1013 +chrX 1506012 . A . . END=1506078 GT:DP:GQ:MIN_DP:PL 0/0:43:90:43:0,90,1250 +chrX 1506079 . G A, 1191.06 . AS_QUALapprox=|1205|0;AS_VarDP=0|39|0;DP=46;QUALapprox=1205;RAW_GT_COUNT=0,0,1;RAW_MQandDP=163521,46;VarDP=39 GT:AD:DP:GQ:PL:SB 1/1:0,39,0:39:99:1205,116,0,1205,116,1205:0,0,14,25 +chrX 1506080 . C . . END=1506681 GT:DP:GQ:MIN_DP:PL 0/0:48:56:48:0,56,1131 +chrX 1506682 . CT C, 911.03 . AS_QUALapprox=|925|0;AS_VarDP=0|35|0;DP=50;QUALapprox=925;RAW_GT_COUNT=0,0,1;RAW_MQandDP=178000,50;VarDP=35 GT:AD:DP:GQ:PL:SB 1/1:0,35,0:35:99:925,106,0,925,106,925:0,0,14,21 +chrX 1506684 . T . . END=1506814 GT:DP:GQ:MIN_DP:PL 0/0:49:84:49:0,84,1340 +chrX 1506815 . T C, 1944.06 . AS_QUALapprox=|1958|0;AS_VarDP=0|44|0;DP=46;QUALapprox=1958;RAW_GT_COUNT=0,0,1;RAW_MQandDP=160003,46;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,44,0:44:99:0|1:1506815_T_C:1958,132,0,1958,132,1958:1506815:0,0,22,22 +chrX 1506816 . T . . END=1506822 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,120,1800 +chrX 1506823 . A G, 1944.06 . AS_QUALapprox=|1958|0;AS_VarDP=0|44|0;DP=49;QUALapprox=1958;RAW_GT_COUNT=0,0,1;RAW_MQandDP=167879,49;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,44,0:44:99:0|1:1506815_T_C:1958,132,0,1958,132,1958:1506815:0,0,23,21 +chrX 1506824 . C . . END=1506877 GT:DP:GQ:MIN_DP:PL 0/0:44:93:44:0,93,1265 +chrX 1506878 . G T, 1357.06 . AS_QUALapprox=|1371|0;AS_VarDP=0|42|0;DP=43;QUALapprox=1371;RAW_GT_COUNT=0,0,1;RAW_MQandDP=139888,43;VarDP=42 GT:AD:DP:GQ:PL:SB 1/1:0,42,0:42:99:1371,126,0,1371,126,1371:0,0,17,25 +chrX 1506879 . T . . END=1506916 GT:DP:GQ:MIN_DP:PL 0/0:46:46:46:0,46,1419 +chrX 1506917 . C . . END=1506918 GT:DP:GQ:MIN_DP:PL 0/0:51:11:51:0,11,1310 +chrX 1506919 . G . . END=1506919 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 1506920 . C . . END=1506920 GT:DP:GQ:MIN_DP:PL 0/0:50:11:50:0,11,1339 +chrX 1506921 . C . . END=1506922 GT:DP:GQ:MIN_DP:PL 0/0:51:24:50:0,24,1384 +chrX 1506923 . A . . END=1506924 GT:DP:GQ:MIN_DP:PL 0/0:49:5:49:0,5,1310 +chrX 1506925 . C . . END=1506931 GT:DP:GQ:MIN_DP:PL 0/0:52:24:50:0,24,1405 +chrX 1506932 . T . . END=1506932 GT:DP:GQ:MIN_DP:PL 0/0:53:16:53:0,16,1445 +chrX 1506933 . C . . END=1506935 GT:DP:GQ:MIN_DP:PL 0/0:52:24:52:0,24,1343 +chrX 1506936 . A . . END=1506936 GT:DP:GQ:MIN_DP:PL 0/0:52:17:52:0,17,1368 +chrX 1506937 . A . . END=1506940 GT:DP:GQ:MIN_DP:PL 0/0:52:35:51:0,35,1425 +chrX 1506941 . G . . END=1506941 GT:DP:GQ:MIN_DP:PL 0/0:50:11:50:0,11,1380 +chrX 1506942 . C . . END=1506945 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 1506946 . G . . END=1506952 GT:DP:GQ:MIN_DP:PL 0/0:54:0:54:0,0,1388 +chrX 1506953 . G . . END=1506954 GT:DP:GQ:MIN_DP:PL 0/0:54:20:54:0,20,1474 +chrX 1506955 . C . . END=1506956 GT:DP:GQ:MIN_DP:PL 0/0:58:0:58:0,0,1483 +chrX 1506957 . T . . END=1506957 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1506958 . G . . END=1506959 GT:DP:GQ:MIN_DP:PL 0/0:59:0:59:0,0,1524 +chrX 1506960 . G . . END=1506960 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1506961 . C . . END=1506964 GT:DP:GQ:MIN_DP:PL 0/0:60:0:60:0,0,1492 +chrX 1506965 . C . . END=1506965 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 1506966 . G . . END=1506967 GT:DP:GQ:MIN_DP:PL 0/0:61:0:61:0,0,1256 +chrX 1506968 . G A, 1529.06 . AS_QUALapprox=|1543|0;AS_VarDP=0|51|0;DP=52;QUALapprox=1543;RAW_GT_COUNT=0,0,1;RAW_MQandDP=181460,52;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1543,152,0,1543,152,1543:0,0,20,31 +chrX 1506969 . C . . END=1507024 GT:DP:GQ:MIN_DP:PL 0/0:49:72:49:0,72,1170 +chrX 1507025 . C CCCCATGGCTAAAGTTAAGATGCAATTTAGTTGGAAGCGA, 2181.03 . AS_QUALapprox=|2195|0;AS_VarDP=0|49|0;DP=57;QUALapprox=2195;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:2195,144,0,2199,147,2202:0,0,27,22 +chrX 1507026 . C . . END=1507026 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,120,1800 +chrX 1507027 . A . . END=1507034 GT:DP:GQ:MIN_DP:PL 0/0:55:0:55:0,0,173 +chrX 1507035 . A . . END=1507035 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 1507036 . G . . END=1507037 GT:DP:GQ:MIN_DP:PL 0/0:57:0:57:0,0,316 +chrX 1507038 . G . . END=1507038 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 1507039 . G . . END=1507039 GT:DP:GQ:MIN_DP:PL 0/0:54:0:54:0,0,395 +chrX 1507040 . T . . END=1507040 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,120,1800 +chrX 1507041 . C . . END=1507043 GT:DP:GQ:MIN_DP:PL 0/0:50:0:50:0,0,267 +chrX 1507044 . A . . END=1507044 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1507045 . G . . END=1507045 GT:DP:GQ:MIN_DP:PL 0/0:52:0:52:0,0,496 +chrX 1507046 . G . . END=1507046 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 1507047 . A . . END=1507049 GT:DP:GQ:MIN_DP:PL 0/0:57:0:57:0,0,551 +chrX 1507050 . T . . END=1507050 GT:DP:GQ:MIN_DP:PL 0/0:73:99:73:0,120,1800 +chrX 1507051 . G . . END=1507058 GT:DP:GQ:MIN_DP:PL 0/0:55:0:55:0,0,496 +chrX 1507059 . A . . END=1507059 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 1507060 . G . . END=1507063 GT:DP:GQ:MIN_DP:PL 0/0:50:0:50:0,0,614 +chrX 1507064 . A . . END=1507064 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1507065 . A . . END=1507066 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,700 +chrX 1507067 . T . . END=1507067 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 1507068 . C . . END=1507072 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,768 +chrX 1507073 . C . . END=1507073 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 1507074 . T . . END=1507074 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,903 +chrX 1507075 . G . . END=1507076 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,117,1755 +chrX 1507077 . T . . END=1507081 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,893 +chrX 1507082 . T . . END=1507082 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,105,1575 +chrX 1507083 . C . . END=1507085 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,923 +chrX 1507086 . A . . END=1507086 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,105,1575 +chrX 1507087 . A . . END=1507092 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,923 +chrX 1507093 . C . . END=1507094 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,108,1620 +chrX 1507095 . G . . END=1507109 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,982 +chrX 1507110 . A . . END=1507113 GT:DP:GQ:MIN_DP:PL 0/0:47:31:46:0,31,1296 +chrX 1507114 . C . . END=1507114 GT:DP:GQ:MIN_DP:PL 0/0:45:16:45:0,16,1186 +chrX 1507115 . G . . END=1507115 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,114,1710 +chrX 1507116 . G . . END=1507126 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,1011 +chrX 1507127 . G . . END=1507163 GT:DP:GQ:MIN_DP:PL 0/0:42:98:42:0,98,1320 +chrX 1507164 . T C, 1421.06 . AS_QUALapprox=|1435|0;AS_VarDP=0|44|0;DP=45;QUALapprox=1435;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162000,45;VarDP=44 GT:AD:DP:GQ:PL:SB 1/1:0,44,0:44:99:1435,131,0,1435,131,1435:0,0,23,21 +chrX 1507165 . C . . END=1507209 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,107,1484 +chrX 1507210 . G C, 1778.06 . AS_QUALapprox=|1792|0;AS_VarDP=1|53|0;BaseQRankSum=0.000;DP=55;MQRankSum=0.000;QUALapprox=1792;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;ReadPosRankSum=1.476;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:1,53,0:54:99:1792,128,0,1795,159,1827:0,1,30,23 +chrX 1507211 . A . . END=1508703 GT:DP:GQ:MIN_DP:PL 0/0:57:72:57:0,72,1419 +chrX 1508704 . TTCTATCTA T,TTCTA, 1033.02 . AS_QUALapprox=|631|452|0;AS_VarDP=0|16|10|0;DP=48;QUALapprox=1050;RAW_GT_COUNT=0,0,1;RAW_MQandDP=121253,48;VarDP=26 GT:AD:DP:GQ:PL:SB 1/2:0,16,10,0:26:99:1050,419,483,629,0,598,1058,480,638,1109:0,0,15,11 +chrX 1508713 . T . . END=1508852 GT:DP:GQ:MIN_DP:PL 0/0:47:55:47:0,55,1086 +chrX 1508853 . TCATC T, 886.60 . AS_QUALapprox=|894|0;AS_VarDP=23|24|0;BaseQRankSum=-0.128;DP=58;MQRankSum=-3.554;QUALapprox=894;RAW_GT_COUNT=0,1,0;RAW_MQandDP=145138,58;ReadPosRankSum=0.759;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:23,24,0:47:99:894,0,858,963,931,1894:16,7,11,13 +chrX 1508858 . C . . END=1508997 GT:DP:GQ:MIN_DP:PL 0/0:58:53:58:0,53,1228 +chrX 1508998 . G . . END=1508998 GT:DP:GQ:MIN_DP:PL 0/0:62:0:62:0,0,1546 +chrX 1508999 . T . . END=1508999 GT:DP:GQ:MIN_DP:PL 0/0:65:21:65:0,21,1699 +chrX 1509000 . G . . END=1509000 GT:DP:GQ:MIN_DP:PL 0/0:64:0:64:0,0,1440 +chrX 1509001 . T . . END=1509001 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,120,1800 +chrX 1509002 . T TCATCCATC,TCATTCATC, 949.60 . AS_QUALapprox=|957|240|0;AS_VarDP=18|23|0|0;BaseQRankSum=-1.546;DP=64;MQRankSum=-0.285;QUALapprox=957;RAW_GT_COUNT=0,1,0;RAW_MQandDP=213784,64;ReadPosRankSum=0.539;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:18,23,0,0:41:99:957,0,691,717,764,1822,927,794,1682,1825:11,7,13,10 +chrX 1509003 . C . . END=1509098 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 1509099 . GTATCTATC G,GTATCTATCTATC, 1446.02 . AS_QUALapprox=|750|745|0;AS_VarDP=0|20|17|0;DP=57;QUALapprox=1463;RAW_GT_COUNT=0,0,1;RAW_MQandDP=202105,57;VarDP=37 GT:AD:DP:GQ:PL:SB 1/2:0,20,17,0:37:99:1463,713,780,755,0,718,1478,783,775,1543:0,0,9,28 +chrX 1509108 . T . . END=1509160 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,107,1548 +chrX 1509161 . T TTCTATCTATCTA, 885.60 . AS_QUALapprox=|893|0;AS_VarDP=31|24|0;BaseQRankSum=1.830;DP=68;MQRankSum=-1.100;QUALapprox=893;RAW_GT_COUNT=0,1,0;RAW_MQandDP=240417,68;ReadPosRankSum=-0.518;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:31,24,0:55:99:893,0,1190,1029,1308,2566:12,19,11,13 +chrX 1509162 . T . . END=1509373 GT:DP:GQ:MIN_DP:PL 0/0:55:51:55:0,51,1196 +chrX 1509374 . TTCTA T,TTCTATCTA,TCCATTTCTATCTA, 1001.02 . AS_QUALapprox=|555|491|0|0;AS_VarDP=0|14|13|0|0;DP=46;QUALapprox=1018;RAW_GT_COUNT=0,0,1;RAW_MQandDP=141510,46;VarDP=27 GT:AD:DP:GQ:PL:SB 1/2:0,14,13,0,0:27:99:1018,463,501,527,0,537,1071,542,585,1778,1032,544,576,1121,1120:0,0,7,20 +chrX 1509379 . T . . END=1509420 GT:DP:GQ:MIN_DP:PL 0/0:35:64:35:0,64,1007 +chrX 1509421 . T TTATC, 695.60 . AS_QUALapprox=|703|0;AS_VarDP=10|18|0;BaseQRankSum=0.253;DP=34;MQRankSum=-0.125;QUALapprox=703;RAW_GT_COUNT=0,1,0;RAW_MQandDP=81162,34;ReadPosRankSum=0.360;VarDP=28 GT:AD:DP:GQ:PL:SB 0/1:10,18,0:28:99:703,0,361,733,415,1149:1,9,8,10 +chrX 1509422 . T . . END=1509514 GT:DP:GQ:MIN_DP:PL 0/0:28:49:28:0,49,780 +chrX 1509515 . TCATC T, 219.60 . AS_QUALapprox=|227|0;AS_VarDP=18|7|0;BaseQRankSum=0.994;DP=33;MQRankSum=-3.353;QUALapprox=227;RAW_GT_COUNT=0,1,0;RAW_MQandDP=81231,33;ReadPosRankSum=-0.350;VarDP=25 GT:AD:DP:GQ:PL:SB 0/1:18,7,0:25:99:227,0,723,282,744,1026:10,8,4,3 +chrX 1509520 . C . . END=1509667 GT:DP:GQ:MIN_DP:PL 0/0:31:28:29:0,28,818 +chrX 1509668 . T TCATC, 556.60 . AS_QUALapprox=|564|0;AS_VarDP=8|14|0;BaseQRankSum=0.000;DP=31;MQRankSum=-0.261;QUALapprox=564;RAW_GT_COUNT=0,1,0;RAW_MQandDP=94032,31;ReadPosRankSum=-1.811;VarDP=22 GT:AD:DP:GQ:PL:SB 0/1:8,14,0:22:99:564,0,294,588,336,924:3,5,13,1 +chrX 1509669 . C . . END=1509750 GT:DP:GQ:MIN_DP:PL 0/0:39:69:39:0,69,1035 +chrX 1509751 . G GTCTATCTATCTATCTATCTA, 745.60 . AS_QUALapprox=|753|0;AS_VarDP=15|21|0;BaseQRankSum=-1.901;DP=53;MQRankSum=-2.624;QUALapprox=753;RAW_GT_COUNT=0,1,0;RAW_MQandDP=177329,53;ReadPosRankSum=-0.867;VarDP=36 GT:AD:DP:GQ:PL:SB 0/1:15,21,0:36:99:753,0,549,801,612,1413:9,6,11,10 +chrX 1509752 . T . . END=1509781 GT:DP:GQ:MIN_DP:PL 0/0:61:92:61:0,92,1545 +chrX 1509782 . A . . END=1509782 GT:DP:GQ:MIN_DP:PL 0/0:50:0:50:0,0,1210 +chrX 1509783 . T . . END=1509783 GT:DP:GQ:MIN_DP:PL 0/0:51:20:51:0,20,1395 +chrX 1509784 . C . . END=1509784 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,1209 +chrX 1509785 . T . . END=1509785 GT:DP:GQ:MIN_DP:PL 0/0:50:52:50:0,52,1481 +chrX 1509786 . A . . END=1509786 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1243 +chrX 1509787 . T . . END=1509787 GT:DP:GQ:MIN_DP:PL 0/0:51:34:51:0,34,1394 +chrX 1509788 . G . . END=1509792 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1138 +chrX 1509793 . C . . END=1509793 GT:DP:GQ:MIN_DP:PL 0/0:49:28:49:0,28,1264 +chrX 1509794 . A . . END=1509796 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1212 +chrX 1509797 . C . . END=1509981 GT:DP:GQ:MIN_DP:PL 0/0:52:78:52:0,78,1474 +chrX 1509982 . C CATCT, 906.60 . AS_QUALapprox=|914|0;AS_VarDP=21|26|0;BaseQRankSum=0.218;DP=49;MQRankSum=0.000;QUALapprox=914;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=-2.708;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:21,26,0:47:99:914,0,774,977,852,1829:12,9,15,11 +chrX 1509983 . A . . END=1511535 GT:DP:GQ:MIN_DP:PL 0/0:51:24:50:0,24,1394 +chrX 1511536 . A T, 741.64 . AS_QUALapprox=|749|0;AS_VarDP=26|27|0;BaseQRankSum=0.058;DP=56;MQRankSum=0.000;QUALapprox=749;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-0.116;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:26,27,0:53:99:749,0,718,827,799,1626:14,12,12,15 +chrX 1511537 . A . . END=1511711 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 1511712 . C T, 818.64 . AS_QUALapprox=|826|0;AS_VarDP=31|29|0;BaseQRankSum=0.000;DP=62;MQRankSum=0.000;QUALapprox=826;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=-1.540;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:31,29,0:60:99:826,0,894,919,982,1901:18,13,17,12 +chrX 1511713 . C . . END=1512544 GT:DP:GQ:MIN_DP:PL 0/0:51:47:51:0,47,1115 +chrX 1512545 . T . . END=1512545 GT:DP:GQ:MIN_DP:PL 0/0:54:0:54:0,0,1202 +chrX 1512546 . C CA, 661.03 . AS_QUALapprox=|675|0;AS_VarDP=1|36|0;BaseQRankSum=2.209;DP=60;MQRankSum=-0.198;QUALapprox=675;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208019,60;ReadPosRankSum=0.610;VarDP=37 GT:AD:DP:GQ:PL:SB 1/1:1,36,0:37:96:675,96,0,679,105,687:1,0,22,14 +chrX 1512547 . A . . END=1512835 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,101,1594 +chrX 1512836 . AATTATT A, 1686.03 . AS_QUALapprox=|1700|0;AS_VarDP=0|38|0;DP=53;QUALapprox=1700;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=38 GT:AD:DP:GQ:PL:SB 1/1:0,38,0:38:99:1700,115,0,1700,115,1700:0,0,13,25 +chrX 1512843 . A . . END=1512900 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,114,1710 +chrX 1512901 . C G, 2245.06 . AS_QUALapprox=|2259|0;AS_VarDP=0|52|0;DP=52;QUALapprox=2259;RAW_GT_COUNT=0,0,1;RAW_MQandDP=185345,52;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,52,0:52:99:0|1:1512901_C_G:2259,156,0,2259,156,2259:1512901:0,0,28,24 +chrX 1512902 . T . . END=1512925 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 1512926 . G A, 2565.06 . AS_QUALapprox=|2579|0;AS_VarDP=0|58|0;DP=58;QUALapprox=2579;RAW_GT_COUNT=0,0,1;RAW_MQandDP=206945,58;VarDP=58 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,58,0:58:99:0|1:1512901_C_G:2579,175,0,2579,175,2579:1512901:0,0,31,27 +chrX 1512927 . T . . END=1512927 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 1512928 . A G, 2531.06 . AS_QUALapprox=|2545|0;AS_VarDP=0|57|0;DP=57;QUALapprox=2545;RAW_GT_COUNT=0,0,1;RAW_MQandDP=203345,57;VarDP=57 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,57,0:57:99:0|1:1512901_C_G:2545,172,0,2545,172,2545:1512901:0,0,30,27 +chrX 1512929 . T . . END=1513021 GT:DP:GQ:MIN_DP:PL 0/0:56:75:56:0,75,1126 +chrX 1513022 . C T, 1062.06 . AS_QUALapprox=|1076|0;AS_VarDP=0|32|0;DP=36;QUALapprox=1076;RAW_GT_COUNT=0,0,1;RAW_MQandDP=125600,36;VarDP=32 GT:AD:DP:GQ:PL:SB 1/1:0,32,0:32:96:1076,96,0,1076,96,1076:0,0,14,18 +chrX 1513023 . C . . END=1513028 GT:DP:GQ:MIN_DP:PL 0/0:32:69:32:0,69,1035 +chrX 1513029 . A . . END=1513029 GT:DP:GQ:MIN_DP:PL 0/0:37:10:37:0,10,605 +chrX 1513030 . C . . END=1513035 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,111,1665 +chrX 1513036 . A . . END=1513036 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,788 +chrX 1513037 . A . . END=1513206 GT:DP:GQ:MIN_DP:PL 0/0:50:86:50:0,86,1116 +chrX 1513207 . T C, 569.64 . AS_QUALapprox=|577|0;AS_VarDP=16|23|0;BaseQRankSum=-1.495;DP=40;MQRankSum=0.000;QUALapprox=577;RAW_GT_COUNT=0,1,0;RAW_MQandDP=144000,40;ReadPosRankSum=0.014;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:16,23,0:39:99:577,0,414,625,481,1106:10,6,12,11 +chrX 1513208 . T . . END=1513213 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1440 +chrX 1513214 . A G, 1523.06 . AS_QUALapprox=|1537|0;AS_VarDP=0|39|0;DP=40;QUALapprox=1537;RAW_GT_COUNT=0,0,1;RAW_MQandDP=144000,40;VarDP=39 GT:AD:DP:GQ:PL:SB 1/1:0,39,0:39:99:1537,117,0,1537,117,1537:0,0,22,17 +chrX 1513215 . C . . END=1513245 GT:DP:GQ:MIN_DP:PL 0/0:39:90:39:0,90,1211 +chrX 1513246 . C CT, 1220.03 . AS_QUALapprox=|1234|0;AS_VarDP=0|44|0;DP=48;QUALapprox=1234;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=44 GT:AD:DP:GQ:PL:SB 1/1:0,44,0:44:99:1234,132,0,1234,132,1234:0,0,23,21 +chrX 1513247 . T . . END=1513463 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,99,1479 +chrX 1513464 . A . . END=1513464 GT:DP:GQ:MIN_DP:PL 0/0:54:9:54:0,9,1429 +chrX 1513465 . T . . END=1513487 GT:DP:GQ:MIN_DP:PL 0/0:51:87:51:0,87,1498 +chrX 1513488 . C G, 612.64 . AS_QUALapprox=|620|0;AS_VarDP=29|24|0;BaseQRankSum=0.584;DP=54;MQRankSum=0.948;QUALapprox=620;RAW_GT_COUNT=0,1,0;RAW_MQandDP=193401,54;ReadPosRankSum=0.384;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:29,24,0:53:99:620,0,779,707,851,1558:11,18,11,13 +chrX 1513489 . T . . END=1514045 GT:DP:GQ:MIN_DP:PL 0/0:70:87:70:0,87,1563 +chrX 1514046 . C T, 967.64 . AS_QUALapprox=|975|0;AS_VarDP=40|37|0;BaseQRankSum=0.355;DP=79;MQRankSum=0.000;QUALapprox=975;RAW_GT_COUNT=0,1,0;RAW_MQandDP=284400,79;ReadPosRankSum=0.127;VarDP=77 GT:AD:DP:GQ:PL:SB 0/1:40,37,0:77:99:975,0,1059,1095,1170,2265:16,24,18,19 +chrX 1514047 . G . . END=1514179 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,115,1800 +chrX 1514180 . C T, 1666.06 . AS_QUALapprox=|1680|0;AS_VarDP=0|51|0;DP=54;QUALapprox=1680;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1680,153,0,1680,153,1680:0,0,25,26 +chrX 1514181 . C . . END=1514431 GT:DP:GQ:MIN_DP:PL 0/0:22:28:19:0,28,585 +chrX 1514432 . C . . END=1514441 GT:DP:GQ:MIN_DP:PL 0/0:18:0:18:0,0,70 +chrX 1514442 . C . . END=1514443 GT:DP:GQ:MIN_DP:PL 0/0:18:39:18:0,39,585 +chrX 1514444 . T . . END=1514445 GT:DP:GQ:MIN_DP:PL 0/0:17:0:17:0,0,237 +chrX 1514446 . C . . END=1514448 GT:DP:GQ:MIN_DP:PL 0/0:17:37:17:0,37,542 +chrX 1514449 . T . . END=1514449 GT:DP:GQ:MIN_DP:PL 0/0:17:0:17:0,0,164 +chrX 1514450 . C . . END=1514451 GT:DP:GQ:MIN_DP:PL 0/0:16:39:16:0,39,585 +chrX 1514452 . C . . END=1514452 GT:DP:GQ:MIN_DP:PL 0/0:16:13:16:0,13,446 +chrX 1514453 . T . . END=1514461 GT:DP:GQ:MIN_DP:PL 0/0:16:24:15:0,24,360 +chrX 1514462 . C . . END=1514462 GT:DP:GQ:MIN_DP:PL 0/0:13:0:13:0,0,0 +chrX 1514463 . T . . END=1514463 GT:DP:GQ:MIN_DP:PL 0/0:14:21:14:0,21,315 +chrX 1514464 . C . . END=1514464 GT:DP:GQ:MIN_DP:PL 0/0:13:0:13:0,0,292 +chrX 1514465 . C . . END=1514465 GT:DP:GQ:MIN_DP:PL 0/0:14:21:14:0,21,315 +chrX 1514466 . T . . END=1514466 GT:DP:GQ:MIN_DP:PL 0/0:14:17:14:0,17,407 +chrX 1514467 . T . . END=1514476 GT:DP:GQ:MIN_DP:PL 0/0:13:21:13:0,21,315 +chrX 1514477 . T . . END=1514477 GT:DP:GQ:MIN_DP:PL 0/0:15:0:15:0,0,244 +chrX 1514478 . T . . END=1514479 GT:DP:GQ:MIN_DP:PL 0/0:16:30:16:0,30,450 +chrX 1514480 . T . . END=1514480 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,258 +chrX 1514481 . C . . END=1514484 GT:DP:GQ:MIN_DP:PL 0/0:15:33:15:0,33,495 +chrX 1514485 . T . . END=1514486 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,286 +chrX 1514487 . C . . END=1514487 GT:DP:GQ:MIN_DP:PL 0/0:14:27:14:0,27,405 +chrX 1514488 . C . . END=1514488 GT:DP:GQ:MIN_DP:PL 0/0:13:0:13:0,0,313 +chrX 1514489 . T . . END=1514498 GT:DP:GQ:MIN_DP:PL 0/0:12:21:12:0,21,315 +chrX 1514499 . C . . END=1514499 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,272 +chrX 1514500 . T . . END=1514502 GT:DP:GQ:MIN_DP:PL 0/0:11:27:11:0,27,405 +chrX 1514503 . C . . END=1514503 GT:DP:GQ:MIN_DP:PL 0/0:10:0:10:0,0,258 +chrX 1514504 . T . . END=1514546 GT:DP:GQ:MIN_DP:PL 0/0:12:25:9:0,25,292 +chrX 1514547 . C . . END=1514556 GT:DP:GQ:MIN_DP:PL 0/0:13:0:13:0,0,0 +chrX 1514557 . C . . END=1514558 GT:DP:GQ:MIN_DP:PL 0/0:14:39:13:0,39,421 +chrX 1514559 . T . . END=1514560 GT:DP:GQ:MIN_DP:PL 0/0:12:0:12:0,0,0 +chrX 1514561 . C . . END=1514563 GT:DP:GQ:MIN_DP:PL 0/0:15:42:15:0,42,467 +chrX 1514564 . T . . END=1514564 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,348 +chrX 1514565 . C . . END=1514578 GT:DP:GQ:MIN_DP:PL 0/0:17:22:15:0,22,446 +chrX 1514579 . C . . END=1514579 GT:DP:GQ:MIN_DP:PL 0/0:21:0:21:0,0,471 +chrX 1514580 . C . . END=1514580 GT:DP:GQ:MIN_DP:PL 0/0:22:66:22:0,66,694 +chrX 1514581 . T . . END=1514581 GT:DP:GQ:MIN_DP:PL 0/0:22:17:22:0,17,565 +chrX 1514582 . T . . END=1514586 GT:DP:GQ:MIN_DP:PL 0/0:23:31:22:0,31,605 +chrX 1514587 . T . . END=1514587 GT:DP:GQ:MIN_DP:PL 0/0:23:0:23:0,0,610 +chrX 1514588 . T . . END=1514615 GT:DP:GQ:MIN_DP:PL 0/0:30:46:30:0,46,749 +chrX 1514616 . C . . END=1514616 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,794 +chrX 1514617 . T . . END=1514623 GT:DP:GQ:MIN_DP:PL 0/0:33:30:32:0,30,928 +chrX 1514624 . C . . END=1514624 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,0 +chrX 1514625 . C . . END=1514625 GT:DP:GQ:MIN_DP:PL 0/0:31:58:31:0,58,898 +chrX 1514626 . T . . END=1514626 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,605 +chrX 1514627 . T . . END=1514649 GT:DP:GQ:MIN_DP:PL 0/0:30:23:30:0,23,777 +chrX 1514650 . T . . END=1514650 GT:DP:GQ:MIN_DP:PL 0/0:27:0:27:0,0,629 +chrX 1514651 . C . . END=1514653 GT:DP:GQ:MIN_DP:PL 0/0:26:43:26:0,43,675 +chrX 1514654 . C . . END=1514654 GT:DP:GQ:MIN_DP:PL 0/0:26:9:26:0,9,685 +chrX 1514655 . C . . END=1514660 GT:DP:GQ:MIN_DP:PL 0/0:26:43:26:0,43,720 +chrX 1514661 . C . . END=1514661 GT:DP:GQ:MIN_DP:PL 0/0:24:0:24:0,0,0 +chrX 1514662 . T . . END=1514663 GT:DP:GQ:MIN_DP:PL 0/0:23:37:21:0,37,633 +chrX 1514664 . C . . END=1514664 GT:DP:GQ:MIN_DP:PL 0/0:20:0:20:0,0,496 +chrX 1514665 . C . . END=1514666 GT:DP:GQ:MIN_DP:PL 0/0:24:42:24:0,42,630 +chrX 1514667 . T . . END=1514693 GT:DP:GQ:MIN_DP:PL 0/0:24:0:24:0,0,0 +chrX 1514694 . C . . END=1514707 GT:DP:GQ:MIN_DP:PL 0/0:28:45:28:0,45,675 +chrX 1514708 . C . . END=1514711 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,356 +chrX 1514712 . C . . END=1514724 GT:DP:GQ:MIN_DP:PL 0/0:29:27:27:0,27,675 +chrX 1514725 . T . . END=1514725 GT:DP:GQ:MIN_DP:PL 0/0:30:6:30:0,6,754 +chrX 1514726 . C . . END=1514726 GT:DP:GQ:MIN_DP:PL 0/0:32:42:32:0,42,630 +chrX 1514727 . C . . END=1514730 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,550 +chrX 1514731 . C . . END=1514736 GT:DP:GQ:MIN_DP:PL 0/0:34:38:34:0,38,810 +chrX 1514737 . C . . END=1514737 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,793 +chrX 1514738 . T . . END=1514738 GT:DP:GQ:MIN_DP:PL 0/0:35:63:35:0,63,945 +chrX 1514739 . T . . END=1514739 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,759 +chrX 1514740 . C . . END=1514759 GT:DP:GQ:MIN_DP:PL 0/0:34:29:33:0,29,887 +chrX 1514760 . C . . END=1514762 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,664 +chrX 1514763 . C . . END=1514764 GT:DP:GQ:MIN_DP:PL 0/0:36:48:36:0,48,1001 +chrX 1514765 . C . . END=1514767 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,813 +chrX 1514768 . T . . END=1514768 GT:DP:GQ:MIN_DP:PL 0/0:35:70:35:0,70,1036 +chrX 1514769 . C . . END=1514769 GT:DP:GQ:MIN_DP:PL 0/0:35:1:35:0,1,938 +chrX 1514770 . C . . END=1514770 GT:DP:GQ:MIN_DP:PL 0/0:35:36:35:0,36,1018 +chrX 1514771 . T . . END=1514771 GT:DP:GQ:MIN_DP:PL 0/0:35:1:35:0,1,857 +chrX 1514772 . T . . END=1514792 GT:DP:GQ:MIN_DP:PL 0/0:34:29:33:0,29,852 +chrX 1514793 . C . . END=1514797 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,39 +chrX 1514798 . C . . END=1514803 GT:DP:GQ:MIN_DP:PL 0/0:30:31:30:0,31,838 +chrX 1514804 . C T, 568.64 . AS_QUALapprox=|576|0;AS_VarDP=10|15|0;BaseQRankSum=2.655;DP=37;MQRankSum=-0.098;QUALapprox=576;RAW_GT_COUNT=0,1,0;RAW_MQandDP=120081,37;ReadPosRankSum=1.527;VarDP=25 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:10,15,0:25:99:0|1:1514804_C_T:576,0,349,606,395,1001:1514804:7,3,1,14 +chrX 1514805 . T . . END=1514810 GT:DP:GQ:MIN_DP:PL 0/0:25:60:25:0,60,900 +chrX 1514811 . T TCCTTCCCTTTC, 571.60 . AS_QUALapprox=|579|0;AS_VarDP=9|15|0;BaseQRankSum=2.387;DP=36;MQRankSum=0.000;QUALapprox=579;RAW_GT_COUNT=0,1,0;RAW_MQandDP=114232,36;ReadPosRankSum=0.269;VarDP=24 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:9,15,0:24:99:0|1:1514804_C_T:579,0,320,606,365,971:1514804:7,2,1,14 +chrX 1514812 . C . . END=1514826 GT:DP:GQ:MIN_DP:PL 0/0:22:24:21:0,24,360 +chrX 1514827 . C T, 372.64 . AS_QUALapprox=|380|0;AS_VarDP=9|10|0;BaseQRankSum=2.122;DP=31;MQRankSum=0.230;QUALapprox=380;RAW_GT_COUNT=0,1,0;RAW_MQandDP=97023,31;ReadPosRankSum=-0.979;VarDP=19 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:9,10,0:19:99:0|1:1514804_C_T:380,0,335,407,365,772:1514804:7,2,1,9 +chrX 1514828 . C . . END=1514834 GT:DP:GQ:MIN_DP:PL 0/0:20:24:20:0,24,360 +chrX 1514835 . T TTCCCTTCCC,TTCCCTTTTCCTTTCCTTCCCTTCCC, 698.02 . AS_QUALapprox=|547|371|0;AS_VarDP=0|9|4|0;DP=31;QUALapprox=715;RAW_GT_COUNT=0,0,1;RAW_MQandDP=94384,31;VarDP=13 GT:AD:DP:GQ:PL:SB 1/2:0,9,4,0:13:99:715,168,252,370,0,344,638,236,379,681:0,0,5,8 +chrX 1514836 . T . . END=1514845 GT:DP:GQ:MIN_DP:PL 0/0:13:21:13:0,21,315 +chrX 1514846 . T . . END=1514846 GT:DP:GQ:MIN_DP:PL 0/0:10:16:10:0,16,268 +chrX 1514847 . T . . END=1514847 GT:DP:GQ:MIN_DP:PL 0/0:10:21:10:0,21,315 +chrX 1514848 . T . . END=1514860 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,199 +chrX 1514861 . C . . END=1514882 GT:DP:GQ:MIN_DP:PL 0/0:12:21:8:0,21,233 +chrX 1514883 . TCTCCCCTCCCCTTCCC T, 419.60 . AS_QUALapprox=|427|0;AS_VarDP=5|11|0;BaseQRankSum=-0.774;DP=30;MQRankSum=-0.539;QUALapprox=427;RAW_GT_COUNT=0,1,0;RAW_MQandDP=100060,30;ReadPosRankSum=-1.567;VarDP=16 GT:AD:DP:GQ:PL:SB 0/1:5,11,0:16:99:427,0,177,442,210,652:1,4,6,5 +chrX 1514900 . C . . END=1515332 GT:DP:GQ:MIN_DP:PL 0/0:62:56:62:0,56,788 +chrX 1515333 . T C, 698.64 . AS_QUALapprox=|706|0;AS_VarDP=32|27|0;BaseQRankSum=-0.295;DP=62;MQRankSum=0.000;QUALapprox=706;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=-1.507;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:32,27,0:59:99:706,0,895,802,976,1779:15,17,17,10 +chrX 1515334 . G . . END=1515375 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 1515376 . CT C, 435.60 . AS_QUALapprox=|443|0;AS_VarDP=37|24|0;BaseQRankSum=1.370;DP=77;MQRankSum=0.839;QUALapprox=443;RAW_GT_COUNT=0,1,0;RAW_MQandDP=272691,77;ReadPosRankSum=0.672;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:37,24,0:61:99:443,0,779,554,852,1406:22,15,14,10 +chrX 1515378 . T . . END=1515424 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 1515425 . G T, 905.64 . AS_QUALapprox=|913|0;AS_VarDP=28|35|0;BaseQRankSum=-1.361;DP=69;MQRankSum=-0.862;QUALapprox=913;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244746,69;ReadPosRankSum=1.861;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:28,35,0:63:99:913,0,983,996,1088,2084:17,11,16,19 +chrX 1515426 . C . . END=1515447 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1515448 . C T, 707.64 . AS_QUALapprox=|715|0;AS_VarDP=33|26|0;BaseQRankSum=2.977;DP=62;MQRankSum=0.922;QUALapprox=715;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219665,62;ReadPosRankSum=-0.321;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:33,26,0:59:99:715,0,1276,815,1354,2169:14,19,16,10 +chrX 1515449 . G . . END=1515811 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 1515812 . C T, 570.64 . AS_QUALapprox=|578|0;AS_VarDP=40|23|0;BaseQRankSum=0.474;DP=66;MQRankSum=0.000;QUALapprox=578;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=-1.214;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:40,23,0:63:99:578,0,1131,698,1200,1898:24,16,12,11 +chrX 1515813 . T . . END=1515945 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,118,1573 +chrX 1515946 . T TG, 394.60 . AS_QUALapprox=|402|0;AS_VarDP=30|12|0;BaseQRankSum=-1.291;DP=45;MQRankSum=-1.528;QUALapprox=402;RAW_GT_COUNT=0,1,0;RAW_MQandDP=160609,45;ReadPosRankSum=-0.474;VarDP=42 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:30,12,0:42:99:0|1:1515946_T_TG:402,0,1183,492,1219,1711:1515946:16,14,9,3 +chrX 1515947 . C G, 422.64 . AS_QUALapprox=|430|0;AS_VarDP=31|13|0;BaseQRankSum=2.113;DP=47;MQRankSum=-1.494;QUALapprox=430;RAW_GT_COUNT=0,1,0;RAW_MQandDP=167809,47;ReadPosRankSum=-0.376;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:31,13,0:44:99:0|1:1515946_T_TG:430,0,1210,523,1249,1772:1515946:17,14,10,3 +chrX 1515948 . G . . END=1515953 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,102,1530 +chrX 1515954 . T G, 391.64 . AS_QUALapprox=|399|0;AS_VarDP=31|12|0;BaseQRankSum=0.041;DP=45;MQRankSum=-1.555;QUALapprox=399;RAW_GT_COUNT=0,1,0;RAW_MQandDP=160609,45;ReadPosRankSum=-0.265;VarDP=43 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:31,12,0:43:99:0|1:1515946_T_TG:399,0,1222,492,1258,1751:1515946:18,13,10,2 +chrX 1515955 . G . . END=1516019 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,111,1420 +chrX 1516020 . TAAA T, 858.60 . AS_QUALapprox=|866|0;AS_VarDP=26|23|0;BaseQRankSum=-0.690;DP=57;MQRankSum=-1.856;QUALapprox=866;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201026,57;ReadPosRankSum=0.423;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,23,0:49:99:0|1:1516020_TAAA_T:866,0,1001,944,1070,2014:1516020:14,12,10,13 +chrX 1516024 . A . . END=1516037 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,104,1604 +chrX 1516038 . A G, 895.64 . AS_QUALapprox=|903|0;AS_VarDP=31|25|0;BaseQRankSum=-0.734;DP=57;MQRankSum=-1.943;QUALapprox=903;RAW_GT_COUNT=0,1,0;RAW_MQandDP=202417,57;ReadPosRankSum=0.313;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:31,25,0:56:99:0|1:1516020_TAAA_T:903,0,1148,996,1223,2219:1516020:17,14,11,14 +chrX 1516039 . T . . END=1516215 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,113,1760 +chrX 1516216 . C CAAA, 2132.03 . AS_QUALapprox=|2146|0;AS_VarDP=0|49|0;DP=56;QUALapprox=2146;RAW_GT_COUNT=0,0,1;RAW_MQandDP=199600,56;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:2146,147,0,2146,147,2146:0,0,28,21 +chrX 1516217 . A . . END=1516297 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 1516298 . CT C, 1224.60 . AS_QUALapprox=|1232|0;AS_VarDP=29|37|0;BaseQRankSum=1.425;DP=67;MQRankSum=0.000;QUALapprox=1232;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=-0.614;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:29,37,0:66:99:1232,0,943,1320,1054,2374:13,16,21,16 +chrX 1516300 . C . . END=1516392 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 1516393 . G T, 891.64 . AS_QUALapprox=|899|0;AS_VarDP=28|34|0;BaseQRankSum=-0.862;DP=66;MQRankSum=-0.593;QUALapprox=899;RAW_GT_COUNT=0,1,0;RAW_MQandDP=227979,66;ReadPosRankSum=-0.729;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:28,34,0:62:99:899,0,779,984,880,1863:11,17,11,23 +chrX 1516394 . C . . END=1516458 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,109,1800 +chrX 1516459 . T C, 918.64 . AS_QUALapprox=|926|0;AS_VarDP=27|24|0;BaseQRankSum=0.424;DP=51;MQRankSum=-1.851;QUALapprox=926;RAW_GT_COUNT=0,1,0;RAW_MQandDP=179939,51;ReadPosRankSum=1.142;VarDP=51 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,24,0:51:99:0|1:1516459_T_C:926,0,1051,1008,1123,2131:1516459:13,14,6,18 +chrX 1516460 . T . . END=1516467 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 1516468 . G A, 948.64 . AS_QUALapprox=|956|0;AS_VarDP=31|25|0;BaseQRankSum=0.161;DP=56;MQRankSum=-1.218;QUALapprox=956;RAW_GT_COUNT=0,1,0;RAW_MQandDP=196940,56;ReadPosRankSum=0.528;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:31,25,0:56:99:0|1:1516459_T_C:956,0,1226,1050,1302,2351:1516459:16,15,6,19 +chrX 1516469 . C . . END=1516481 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 1516482 . G A, 943.64 . AS_QUALapprox=|951|0;AS_VarDP=30|26|0;BaseQRankSum=0.505;DP=56;MQRankSum=-1.511;QUALapprox=951;RAW_GT_COUNT=0,1,0;RAW_MQandDP=196589,56;ReadPosRankSum=-0.970;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:30,26,0:56:99:0|1:1516459_T_C:951,0,1181,1041,1260,2301:1516459:17,13,7,19 +chrX 1516483 . T . . END=1516490 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 1516491 . T C, 793.64 . AS_QUALapprox=|801|0;AS_VarDP=27|30|0;BaseQRankSum=-0.088;DP=57;MQRankSum=1.498;QUALapprox=801;RAW_GT_COUNT=0,1,0;RAW_MQandDP=200189,57;ReadPosRankSum=1.279;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:27,30,0:57:99:801,0,1033,882,1123,2006:8,19,18,12 +chrX 1516492 . A . . END=1516735 GT:DP:GQ:MIN_DP:PL 0/0:57:66:57:0,66,1321 +chrX 1516736 . A G, 476.64 . AS_QUALapprox=|484|0;AS_VarDP=21|18|0;BaseQRankSum=-1.029;DP=40;MQRankSum=0.000;QUALapprox=484;RAW_GT_COUNT=0,1,0;RAW_MQandDP=144000,40;ReadPosRankSum=1.733;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:21,18,0:39:99:484,0,613,547,667,1214:11,10,10,8 +chrX 1516737 . A . . END=1516771 GT:DP:GQ:MIN_DP:PL 0/0:40:96:40:0,96,1331 +chrX 1516772 . G A, 581.64 . AS_QUALapprox=|589|0;AS_VarDP=19|23|0;BaseQRankSum=-0.493;DP=45;MQRankSum=-0.396;QUALapprox=589;RAW_GT_COUNT=0,1,0;RAW_MQandDP=155325,45;ReadPosRankSum=-1.352;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:19,23,0:42:99:589,0,463,645,532,1177:11,8,15,8 +chrX 1516773 . A . . END=1516822 GT:DP:GQ:MIN_DP:PL 0/0:48:60:48:0,60,1150 +chrX 1516823 . T . . END=1516823 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,1013 +chrX 1516824 . C . . END=1516845 GT:DP:GQ:MIN_DP:PL 0/0:43:76:43:0,76,1175 +chrX 1516846 . T . . END=1516846 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,1009 +chrX 1516847 . C . . END=1517111 GT:DP:GQ:MIN_DP:PL 0/0:42:30:38:0,30,928 +chrX 1517112 . T G, 721.64 . AS_QUALapprox=|729|0;AS_VarDP=23|19|0;BaseQRankSum=-0.614;DP=44;MQRankSum=-3.216;QUALapprox=729;RAW_GT_COUNT=0,1,0;RAW_MQandDP=141606,44;ReadPosRankSum=0.719;VarDP=42 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,19,0:42:99:0|1:1517112_T_G:729,0,909,798,966,1764:1517112:14,9,6,13 +chrX 1517113 . A *,G, 721.64 . AS_QUALapprox=|0|729|0;AS_VarDP=23|2|19|0;BaseQRankSum=-0.179;DP=44;MQRankSum=-3.011;QUALapprox=729;RAW_GT_COUNT=0,1,0;RAW_MQandDP=141606,44;ReadPosRankSum=0.252;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|2:23,2,19,0:44:99:0|1:1517112_T_G:729,758,1719,0,926,909,798,1724,966,1764:1517112:14,9,6,15 +chrX 1517114 . A . . END=1517117 GT:DP:GQ:MIN_DP:PL 0/0:43:92:43:0,92,1314 +chrX 1517118 . T C, 763.64 . AS_QUALapprox=|771|0;AS_VarDP=23|20|0;BaseQRankSum=0.704;DP=45;MQRankSum=-3.110;QUALapprox=771;RAW_GT_COUNT=0,1,0;RAW_MQandDP=145206,45;ReadPosRankSum=0.209;VarDP=43 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,20,0:43:99:0|1:1517112_T_G:771,0,906,840,966,1806:1517112:14,9,7,13 +chrX 1517119 . G *,A, 805.64 . AS_QUALapprox=|0|813|0;AS_VarDP=23|2|21|0;BaseQRankSum=1.148;DP=46;MQRankSum=-2.833;QUALapprox=813;RAW_GT_COUNT=0,1,0;RAW_MQandDP=148806,46;ReadPosRankSum=-0.282;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|2:23,2,21,0:46:99:0|1:1517112_T_G:813,842,1803,0,926,903,882,1808,966,1848:1517112:14,9,8,15 +chrX 1517120 . G . . END=1517121 GT:DP:GQ:MIN_DP:PL 0/0:43:88:43:0,88,1285 +chrX 1517122 . T C, 841.64 . AS_QUALapprox=|849|0;AS_VarDP=25|22|0;BaseQRankSum=2.579;DP=49;MQRankSum=-3.055;QUALapprox=849;RAW_GT_COUNT=0,1,0;RAW_MQandDP=159606,49;ReadPosRankSum=0.195;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,22,0:47:99:0|1:1517112_T_G:849,0,984,924,1050,1974:1517112:15,10,10,12 +chrX 1517123 . T . . END=1517136 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,106,1463 +chrX 1517137 . G A, 1044.64 . AS_QUALapprox=|1052|0;AS_VarDP=27|27|0;BaseQRankSum=1.974;DP=56;MQRankSum=-3.000;QUALapprox=1052;RAW_GT_COUNT=0,1,0;RAW_MQandDP=184015,56;ReadPosRankSum=-0.999;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,27,0:54:99:0|1:1517112_T_G:1052,0,1052,1134,1134,2267:1517112:18,9,12,15 +chrX 1517138 . C *,A, 1047.64 . AS_QUALapprox=|0|1055|0;AS_VarDP=26|2|27|0;BaseQRankSum=0.055;DP=55;MQRankSum=-2.800;QUALapprox=1055;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180415,55;ReadPosRankSum=-1.328;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|2:26,2,27,0:55:99:0|1:1517112_T_G:1055,1094,2181,0,1052,1010,1134,2186,1092,2225:1517112:17,9,12,17 +chrX 1517139 . T . . END=1517157 GT:DP:GQ:MIN_DP:PL 0/0:53:97:53:0,97,1639 +chrX 1517158 . C G, 960.64 . AS_QUALapprox=|968|0;AS_VarDP=27|25|0;BaseQRankSum=1.719;DP=54;MQRankSum=-3.583;QUALapprox=968;RAW_GT_COUNT=0,1,0;RAW_MQandDP=178734,54;ReadPosRankSum=-0.763;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,25,0:52:99:0|1:1517112_T_G:968,0,1048,1050,1125,2178:1517112:18,9,12,13 +chrX 1517159 . T . . END=1517164 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,118,1592 +chrX 1517165 . C A, 1024.64 . AS_QUALapprox=|1032|0;AS_VarDP=27|27|0;BaseQRankSum=0.872;DP=60;MQRankSum=-3.435;QUALapprox=1032;RAW_GT_COUNT=0,1,0;RAW_MQandDP=200334,60;ReadPosRankSum=-0.934;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,27,0:54:99:0|1:1517112_T_G:1032,0,1032,1128,1129,2337:1517112:19,8,14,13 +chrX 1517166 . T . . END=1517861 GT:DP:GQ:MIN_DP:PL 0/0:66:93:66:0,93,1703 +chrX 1517862 . G A, 725.64 . AS_QUALapprox=|733|0;AS_VarDP=25|27|0;BaseQRankSum=-0.482;DP=54;MQRankSum=0.000;QUALapprox=733;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=-0.101;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:25,27,0:52:99:733,0,653,807,734,1541:18,7,16,11 +chrX 1517863 . C . . END=1517924 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,114,1420 +chrX 1517925 . A G, 625.64 . AS_QUALapprox=|633|0;AS_VarDP=22|25|0;BaseQRankSum=-1.492;DP=48;MQRankSum=-0.895;QUALapprox=633;RAW_GT_COUNT=0,1,0;RAW_MQandDP=170721,48;ReadPosRankSum=-1.834;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:22,25,0:47:99:633,0,594,699,669,1367:17,5,13,12 +chrX 1517926 . T . . END=1517978 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 1517979 . C T, 803.64 . AS_QUALapprox=|811|0;AS_VarDP=33|31|0;BaseQRankSum=2.010;DP=64;MQRankSum=-1.041;QUALapprox=811;RAW_GT_COUNT=0,1,0;RAW_MQandDP=224141,64;ReadPosRankSum=1.176;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:33,31,0:64:99:811,0,770,909,863,1772:18,15,16,15 +chrX 1517980 . G . . END=1518064 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,120,1800 +chrX 1518065 . T C, 769.64 . AS_QUALapprox=|777|0;AS_VarDP=34|31|0;BaseQRankSum=-2.097;DP=66;MQRankSum=0.986;QUALapprox=777;RAW_GT_COUNT=0,1,0;RAW_MQandDP=236916,66;ReadPosRankSum=-1.084;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:34,31,0:65:99:777,0,957,879,1050,1929:13,21,11,20 +chrX 1518066 . G . . END=1518118 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 1518119 . TA T, 750.60 . AS_QUALapprox=|758|0;AS_VarDP=30|30|0;BaseQRankSum=1.079;DP=69;MQRankSum=1.450;QUALapprox=758;RAW_GT_COUNT=0,1,0;RAW_MQandDP=246517,69;ReadPosRankSum=-0.804;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:30,30,0:60:99:758,0,753,849,843,1692:17,13,16,14 +chrX 1518121 . A . . END=1518231 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 1518232 . C T, 644.64 . AS_QUALapprox=|652|0;AS_VarDP=37|27|0;BaseQRankSum=-0.884;DP=67;MQRankSum=0.371;QUALapprox=652;RAW_GT_COUNT=0,1,0;RAW_MQandDP=238221,67;ReadPosRankSum=-2.271;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:37,27,0:64:99:652,0,995,762,1075,1838:25,12,17,10 +chrX 1518233 . C . . END=1518424 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,110,1583 +chrX 1518425 . C CA, 464.60 . AS_QUALapprox=|472|0;AS_VarDP=28|25|0;BaseQRankSum=-1.301;DP=72;MQRankSum=0.664;QUALapprox=472;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248014,72;ReadPosRankSum=-0.926;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,25,0:53:99:0|1:1518425_C_CA:472,0,1077,557,1151,1708:1518425:14,14,8,17 +chrX 1518426 . A . . END=1518437 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 1518438 . AT A, 1172.60 . AS_QUALapprox=|1180|0;AS_VarDP=32|31|0;BaseQRankSum=0.537;DP=64;MQRankSum=-0.823;QUALapprox=1180;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219214,64;ReadPosRankSum=-0.162;VarDP=63 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:32,31,0:63:99:1|0:1518425_C_CA:1180,0,1228,1277,1322,2598:1518425:13,19,17,14 +chrX 1518440 . A . . END=1518440 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 1518441 . AT A, 1172.60 . AS_QUALapprox=|1180|0;AS_VarDP=32|31|0;BaseQRankSum=-0.797;DP=64;MQRankSum=-0.823;QUALapprox=1180;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219214,64;ReadPosRankSum=-0.096;VarDP=63 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:32,31,0:63:99:1|0:1518425_C_CA:1180,0,1228,1277,1322,2598:1518425:13,19,17,14 +chrX 1518443 . A . . END=1518556 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,101,1617 +chrX 1518557 . T G, 643.64 . AS_QUALapprox=|651|0;AS_VarDP=29|27|0;BaseQRankSum=-2.042;DP=57;MQRankSum=0.000;QUALapprox=651;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=0.320;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:29,27,0:56:99:651,0,796,738,876,1614:22,7,16,11 +chrX 1518558 . T . . END=1520113 GT:DP:GQ:MIN_DP:PL 0/0:51:33:39:0,33,1067 +chrX 1520114 . G A, 337.64 . AS_QUALapprox=|345|0;AS_VarDP=34|15|0;BaseQRankSum=0.108;DP=52;MQRankSum=0.000;QUALapprox=345;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=0.402;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:34,15,0:49:99:345,0,950,446,995,1441:15,19,9,6 +chrX 1520115 . T . . END=1521032 GT:DP:GQ:MIN_DP:PL 0/0:55:52:55:0,52,1150 +chrX 1521033 . TC T, 100.60 . AS_QUALapprox=|108|0;AS_VarDP=26|11|0;BaseQRankSum=0.975;DP=47;MQRankSum=0.975;QUALapprox=108;RAW_GT_COUNT=0,1,0;RAW_MQandDP=163200,47;ReadPosRankSum=1.895;VarDP=37 GT:AD:DP:GQ:PL:SB 0/1:26,11,0:37:99:108,0,726,186,759,944:19,7,1,10 +chrX 1521035 . T . . END=1521053 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,105,1575 +chrX 1521054 . G . . END=1521054 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,1111 +chrX 1521055 . A . . END=1521235 GT:DP:GQ:MIN_DP:PL 0/0:57:48:57:0,48,1295 +chrX 1521236 . C T, 390.64 . AS_QUALapprox=|398|0;AS_VarDP=32|17|0;BaseQRankSum=1.454;DP=52;MQRankSum=-1.329;QUALapprox=398;RAW_GT_COUNT=0,1,0;RAW_MQandDP=185729,52;ReadPosRankSum=0.137;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:32,17,0:49:99:398,0,835,494,886,1380:13,19,7,10 +chrX 1521237 . G . . END=1521477 GT:DP:GQ:MIN_DP:PL 0/0:56:87:56:0,87,1527 +chrX 1521478 . T C, 754.64 . AS_QUALapprox=|762|0;AS_VarDP=21|29|0;BaseQRankSum=-2.580;DP=50;MQRankSum=0.000;QUALapprox=762;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=-0.767;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:21,29,0:50:99:762,0,580,825,667,1492:7,14,16,13 +chrX 1521479 . G . . END=1521679 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,104,1445 +chrX 1521680 . G T, 761.64 . AS_QUALapprox=|769|0;AS_VarDP=19|26|0;BaseQRankSum=1.215;DP=47;MQRankSum=0.000;QUALapprox=769;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=1.713;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:19,26,0:45:99:769,0,515,826,593,1419:8,11,13,13 +chrX 1521681 . G . . END=1521852 GT:DP:GQ:MIN_DP:PL 0/0:42:86:42:0,86,1022 +chrX 1521853 . C T, 443.64 . AS_QUALapprox=|451|0;AS_VarDP=29|19|0;BaseQRankSum=0.911;DP=52;MQRankSum=0.000;QUALapprox=451;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=0.517;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:29,19,0:48:99:451,0,744,539,800,1339:12,17,8,11 +chrX 1521854 . G . . END=1521907 GT:DP:GQ:MIN_DP:PL 0/0:45:59:45:0,59,1136 +chrX 1521908 . A . . END=1521908 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,1033 +chrX 1521909 . T . . END=1521917 GT:DP:GQ:MIN_DP:PL 0/0:42:94:42:0,94,1226 +chrX 1521918 . A . . END=1521918 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,968 +chrX 1521919 . T . . END=1521941 GT:DP:GQ:MIN_DP:PL 0/0:41:30:41:0,30,945 +chrX 1521942 . C . . END=1521942 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,1027 +chrX 1521943 . T . . END=1521943 GT:DP:GQ:MIN_DP:PL 0/0:42:69:42:0,69,1035 +chrX 1521944 . C CTTTT,CTTTTTT, 106.59 . AS_QUALapprox=|106|114|0;AS_VarDP=0|0|0|0;DP=28;QUALapprox=114;RAW_GT_COUNT=0,1,0;RAW_MQandDP=88224,28;VarDP=1 GT:AD:DP:GQ:PL:SB 0/2:1,0,0,0:1:8:114,8,96,0,44,36,72,82,52,130:0,1,0,0 +chrX 1521945 . T . . END=1521945 GT:DP:GQ:MIN_DP:PL 0/0:23:15:23:0,15,225 +chrX 1521946 . T . . END=1521982 GT:DP:GQ:MIN_DP:PL 0/0:24:21:20:0,21,315 +chrX 1521983 . G . . END=1521984 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,681 +chrX 1521985 . T . . END=1521985 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 +chrX 1521986 . C . . END=1521986 GT:DP:GQ:MIN_DP:PL 0/0:30:6:30:0,6,834 +chrX 1521987 . T . . END=1522816 GT:DP:GQ:MIN_DP:PL 0/0:32:21:30:0,21,904 +chrX 1522817 . G C, 852.64 . AS_QUALapprox=|860|0;AS_VarDP=28|31|0;BaseQRankSum=1.491;DP=60;MQRankSum=-0.916;QUALapprox=860;RAW_GT_COUNT=0,1,0;RAW_MQandDP=215425,60;ReadPosRankSum=-0.592;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:28,31,0:59:99:860,0,716,944,809,1753:11,17,16,15 +chrX 1522818 . C . . END=1523047 GT:DP:GQ:MIN_DP:PL 0/0:60:79:60:0,79,1519 +chrX 1523048 . G A, 648.64 . AS_QUALapprox=|656|0;AS_VarDP=18|24|0;BaseQRankSum=0.214;DP=46;MQRankSum=0.000;QUALapprox=656;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=0.966;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:18,24,0:42:99:656,0,445,710,517,1227:9,9,14,10 +chrX 1523049 . A . . END=1523077 GT:DP:GQ:MIN_DP:PL 0/0:41:92:41:0,92,1145 +chrX 1523078 . A AAAATAAAT, 671.60 . AS_QUALapprox=|679|0;AS_VarDP=9|17|0;BaseQRankSum=-1.555;DP=51;MQRankSum=-0.991;QUALapprox=679;RAW_GT_COUNT=0,1,0;RAW_MQandDP=179161,51;ReadPosRankSum=0.809;VarDP=26 GT:AD:DP:GQ:PL:SB 0/1:9,17,0:26:99:679,0,293,708,344,1052:3,6,10,7 +chrX 1523079 . A . . END=1523757 GT:DP:GQ:MIN_DP:PL 0/0:61:95:61:0,95,1375 +chrX 1523758 . T C, 2283.06 . AS_QUALapprox=|2297|0;AS_VarDP=0|69|0;DP=71;QUALapprox=2297;RAW_GT_COUNT=0,0,1;RAW_MQandDP=253444,71;VarDP=69 GT:AD:DP:GQ:PL:SB 1/1:0,69,0:69:99:2297,207,0,2297,207,2297:0,0,33,36 +chrX 1523759 . C . . END=1523795 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 1523796 . C T, 803.64 . AS_QUALapprox=|811|0;AS_VarDP=37|30|0;BaseQRankSum=0.119;DP=69;MQRankSum=0.930;QUALapprox=811;RAW_GT_COUNT=0,1,0;RAW_MQandDP=246244,69;ReadPosRankSum=-0.391;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:37,30,0:67:99:811,0,1044,922,1134,2056:18,19,19,11 +chrX 1523797 . C . . END=1524300 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,114,1528 +chrX 1524301 . C T, 1523.06 . AS_QUALapprox=|1537|0;AS_VarDP=0|42|0;DP=45;QUALapprox=1537;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158884,45;VarDP=42 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,42,0:42:99:0|1:1524301_C_T:1537,125,0,1537,125,1537:1524301:0,0,19,23 +chrX 1524302 . T . . END=1524306 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,114,1710 +chrX 1524307 . C T, 412.64 . AS_QUALapprox=|420|0;AS_VarDP=26|18|0;BaseQRankSum=-0.244;DP=47;MQRankSum=-1.156;QUALapprox=420;RAW_GT_COUNT=0,1,0;RAW_MQandDP=166084,47;ReadPosRankSum=-1.111;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,18,0:44:99:0|1:1524301_C_T:420,0,732,498,786,1284:1524301:15,11,7,11 +chrX 1524308 . A . . END=1524348 GT:DP:GQ:MIN_DP:PL 0/0:47:98:47:0,98,1353 +chrX 1524349 . TCATC T, 371.60 . AS_QUALapprox=|379|0;AS_VarDP=24|11|0;BaseQRankSum=0.873;DP=39;MQRankSum=1.016;QUALapprox=379;RAW_GT_COUNT=0,1,0;RAW_MQandDP=130852,39;ReadPosRankSum=-1.135;VarDP=35 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,11,0:35:99:0|1:1524349_TCATC_T:379,0,924,452,957,1408:1524349:13,11,2,9 +chrX 1524354 . C . . END=1524401 GT:DP:GQ:MIN_DP:PL 0/0:33:24:32:0,24,827 +chrX 1524402 . CATG C, 478.60 . AS_QUALapprox=|486|0;AS_VarDP=20|13|0;BaseQRankSum=-0.467;DP=36;MQRankSum=1.053;QUALapprox=486;RAW_GT_COUNT=0,1,0;RAW_MQandDP=108307,36;ReadPosRankSum=0.534;VarDP=33 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:20,13,0:33:99:0|1:1524349_TCATC_T:486,0,780,546,814,1356:1524349:7,13,4,9 +chrX 1524406 . CATGCA C,*, 520.60 . AS_QUALapprox=|528|0|0;AS_VarDP=20|14|0|0;BaseQRankSum=-0.182;DP=37;MQRankSum=1.153;QUALapprox=528;RAW_GT_COUNT=0,1,0;RAW_MQandDP=111907,37;ReadPosRankSum=0.516;VarDP=34 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:20,14,0,0:34:99:0|1:1524349_TCATC_T:528,0,777,588,807,1390,588,814,1393,1398:1524349:7,13,5,9 +chrX 1524409 . G *,C,GCATGCATC, 692.01 . AS_QUALapprox=|0|0|736|0;AS_VarDP=0|13|0|19|0;DP=35;QUALapprox=1222;RAW_GT_COUNT=0,0,1;RAW_MQandDP=107631,35;VarDP=32 GT:AD:DP:GQ:PL:SB 1/3:0,13,0,19,0:32:99:1222,702,763,1239,788,1332,545,0,543,486,1246,797,1334,545,1340:0,0,11,21 +chrX 1524412 . T . . END=1524420 GT:DP:GQ:MIN_DP:PL 0/0:31:54:31:0,54,878 +chrX 1524421 . C G, 529.64 . AS_QUALapprox=|537|0;AS_VarDP=17|14|0;BaseQRankSum=1.431;DP=33;MQRankSum=1.419;QUALapprox=537;RAW_GT_COUNT=0,1,0;RAW_MQandDP=100431,33;ReadPosRankSum=-0.790;VarDP=31 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:17,14,0:31:99:0|1:1524349_TCATC_T:537,0,651,588,693,1281:1524349:6,11,5,9 +chrX 1524422 . C . . END=1524424 GT:DP:GQ:MIN_DP:PL 0/0:30:69:30:0,69,1035 +chrX 1524425 . C G, 613.64 . AS_QUALapprox=|621|0;AS_VarDP=17|16|0;BaseQRankSum=0.050;DP=35;MQRankSum=1.605;QUALapprox=621;RAW_GT_COUNT=0,1,0;RAW_MQandDP=107631,35;ReadPosRankSum=-1.602;VarDP=33 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:17,16,0:33:99:0|1:1524349_TCATC_T:621,0,645,672,693,1365:1524349:6,11,6,10 +chrX 1524426 . C . . END=1524428 GT:DP:GQ:MIN_DP:PL 0/0:31:78:31:0,78,1170 +chrX 1524429 . C G, 616.64 . AS_QUALapprox=|624|0;AS_VarDP=16|16|0;BaseQRankSum=0.472;DP=34;MQRankSum=1.710;QUALapprox=624;RAW_GT_COUNT=0,1,0;RAW_MQandDP=104031,34;ReadPosRankSum=-1.997;VarDP=32 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:16,16,0:32:99:0|1:1524349_TCATC_T:624,0,603,672,651,1323:1524349:6,10,6,10 +chrX 1524430 . C . . END=1524432 GT:DP:GQ:MIN_DP:PL 0/0:29:81:29:0,81,1215 +chrX 1524433 . C G, 619.64 . AS_QUALapprox=|627|0;AS_VarDP=15|16|0;BaseQRankSum=0.490;DP=33;MQRankSum=1.824;QUALapprox=627;RAW_GT_COUNT=0,1,0;RAW_MQandDP=100431,33;ReadPosRankSum=-2.246;VarDP=31 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:15,16,0:31:99:0|1:1524349_TCATC_T:627,0,561,672,609,1281:1524349:6,9,6,10 +chrX 1524434 . CATCCATTCATCCATCT C, 616.60 . AS_QUALapprox=|624|0;AS_VarDP=16|16|0;BaseQRankSum=1.442;DP=34;MQRankSum=1.972;QUALapprox=624;RAW_GT_COUNT=0,1,0;RAW_MQandDP=103680,34;ReadPosRankSum=-1.780;VarDP=32 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:16,16,0:32:99:0|1:1524349_TCATC_T:624,0,603,672,651,1323:1524349:7,9,6,10 +chrX 1524451 . A . . END=1524484 GT:DP:GQ:MIN_DP:PL 0/0:31:45:31:0,45,815 +chrX 1524485 . C A, 685.64 . AS_QUALapprox=|693|0;AS_VarDP=14|18|0;BaseQRankSum=-1.738;DP=32;MQRankSum=0.709;QUALapprox=693;RAW_GT_COUNT=0,1,0;RAW_MQandDP=104220,32;ReadPosRankSum=1.751;VarDP=32 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:14,18,0:32:99:0|1:1524349_TCATC_T:693,0,534,736,588,1323:1524349:5,9,7,11 +chrX 1524486 . C . . END=1524500 GT:DP:GQ:MIN_DP:PL 0/0:27:60:27:0,60,900 +chrX 1524501 . G GCATC, 638.60 . AS_QUALapprox=|646|0;AS_VarDP=9|17|0;BaseQRankSum=-0.166;DP=26;MQRankSum=-0.329;QUALapprox=646;RAW_GT_COUNT=0,1,0;RAW_MQandDP=85690,26;ReadPosRankSum=1.322;VarDP=26 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:9,17,0:26:99:0|1:1524349_TCATC_T:646,0,327,673,378,1051:1524349:4,5,6,11 +chrX 1524502 . C . . END=1524528 GT:DP:GQ:MIN_DP:PL 0/0:24:51:24:0,51,765 +chrX 1524529 . T . . END=1524529 GT:DP:GQ:MIN_DP:PL 0/0:18:14:18:0,14,436 +chrX 1524530 . C . . END=1524542 GT:DP:GQ:MIN_DP:PL 0/0:20:42:20:0,42,630 +chrX 1524543 . A . . END=1524543 GT:DP:GQ:MIN_DP:PL 0/0:18:0:18:0,0,336 +chrX 1524544 . T . . END=1524548 GT:DP:GQ:MIN_DP:PL 0/0:18:33:18:0,33,495 +chrX 1524549 . C CCATG, 468.60 . AS_QUALapprox=|476|0;AS_VarDP=5|13|0;BaseQRankSum=-1.063;DP=18;MQRankSum=-0.939;QUALapprox=476;RAW_GT_COUNT=0,1,0;RAW_MQandDP=53868,18;ReadPosRankSum=-0.049;VarDP=18 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:5,13,0:18:99:0|1:1524349_TCATC_T:476,0,171,491,210,701:1524349:3,2,4,9 +chrX 1524550 . C . . END=1524552 GT:DP:GQ:MIN_DP:PL 0/0:42:72:42:0,72,1080 +chrX 1524553 . G . . END=1524553 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,868 +chrX 1524554 . C . . END=1524556 GT:DP:GQ:MIN_DP:PL 0/0:40:71:40:0,71,1170 +chrX 1524557 . G . . END=1524561 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,326 +chrX 1524562 . C . . END=1524592 GT:DP:GQ:MIN_DP:PL 0/0:35:21:32:0,21,720 +chrX 1524593 . C . . END=1524597 GT:DP:GQ:MIN_DP:PL 0/0:18:9:18:0,9,720 +chrX 1524598 . C . . END=1524616 GT:DP:GQ:MIN_DP:PL 0/0:17:27:16:0,27,405 +chrX 1524617 . C CCATT, 180.60 . AS_QUALapprox=|188|0;AS_VarDP=7|5|0;BaseQRankSum=-1.335;DP=18;MQRankSum=-2.000;QUALapprox=188;RAW_GT_COUNT=0,1,0;RAW_MQandDP=49385,18;ReadPosRankSum=1.063;VarDP=12 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:7,5,0:12:99:0|1:1524617_C_CCATT:188,0,279,210,294,504:1524617:2,5,3,2 +chrX 1524618 . C . . END=1524624 GT:DP:GQ:MIN_DP:PL 0/0:16:30:16:0,30,450 +chrX 1524625 . T C, 175.64 . AS_QUALapprox=|183|0;AS_VarDP=9|5|0;BaseQRankSum=0.150;DP=20;MQRankSum=-1.645;QUALapprox=183;RAW_GT_COUNT=0,1,0;RAW_MQandDP=52792,20;ReadPosRankSum=1.755;VarDP=14 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:9,5,0:14:99:0|1:1524617_C_CCATT:183,0,363,210,378,588:1524617:2,7,3,2 +chrX 1524626 . C . . END=1524636 GT:DP:GQ:MIN_DP:PL 0/0:20:30:20:0,30,450 +chrX 1524637 . C A, 175.64 . AS_QUALapprox=|183|0;AS_VarDP=9|5|0;BaseQRankSum=-1.151;DP=23;MQRankSum=-1.645;QUALapprox=183;RAW_GT_COUNT=0,1,0;RAW_MQandDP=58833,23;ReadPosRankSum=1.590;VarDP=14 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:9,5,0:14:99:0|1:1524617_C_CCATT:183,0,363,210,378,588:1524617:2,7,3,2 +chrX 1524638 . C . . END=1524644 GT:DP:GQ:MIN_DP:PL 0/0:22:27:21:0,27,405 +chrX 1524645 . A G,ACATCCATG, 273.64 . AS_QUALapprox=|281|68|0;AS_VarDP=7|5|0|0;BaseQRankSum=-1.019;DP=24;MQRankSum=-1.400;QUALapprox=281;RAW_GT_COUNT=0,1,0;RAW_MQandDP=62521,24;ReadPosRankSum=1.198;VarDP=12 GT:AD:DP:GQ:PL:SB 0/1:7,5,0,0:12:99:281,0,354,213,295,624,272,348,581,655:1,6,3,2 +chrX 1524646 . C . . END=1524652 GT:DP:GQ:MIN_DP:PL 0/0:24:27:21:0,27,405 +chrX 1524653 . C G, 231.64 . AS_QUALapprox=|239|0;AS_VarDP=13|7|0;BaseQRankSum=-1.838;DP=29;MQRankSum=1.781;QUALapprox=239;RAW_GT_COUNT=0,1,0;RAW_MQandDP=71980,29;ReadPosRankSum=0.974;VarDP=20 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:13,7,0:20:99:0|1:1524653_C_G:239,0,434,278,455,733:1524653:7,6,1,6 +chrX 1524654 . C . . END=1524668 GT:DP:GQ:MIN_DP:PL 0/0:31:45:31:0,45,675 +chrX 1524669 . T C,TCATCCATC, 678.06 . AS_QUALapprox=|532|186|0;AS_VarDP=1|14|5|0;BaseQRankSum=2.302;DP=38;MQRankSum=2.279;QUALapprox=695;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100545,38;ReadPosRankSum=-0.955;VarDP=20 GT:AD:DP:GQ:PL:SB 1/2:1,14,5,0:20:99:695,163,462,509,0,515,720,354,554,887:0,1,9,10 +chrX 1524670 . C . . END=1524676 GT:DP:GQ:MIN_DP:PL 0/0:36:60:36:0,60,900 +chrX 1524677 . C T, 488.64 . AS_QUALapprox=|496|0;AS_VarDP=15|14|0;BaseQRankSum=0.911;DP=38;MQRankSum=2.149;QUALapprox=496;RAW_GT_COUNT=0,1,0;RAW_MQandDP=100545,38;ReadPosRankSum=-1.246;VarDP=29 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:15,14,0:29:99:0|1:1524653_C_G:496,0,476,541,519,1060:1524653:8,7,7,7 +chrX 1524678 . C . . END=1524707 GT:DP:GQ:MIN_DP:PL 0/0:41:84:41:0,84,1240 +chrX 1524708 . C . . END=1524709 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,846 +chrX 1524710 . C . . END=1524716 GT:DP:GQ:MIN_DP:PL 0/0:40:58:40:0,58,1156 +chrX 1524717 . T . . END=1524717 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,782 +chrX 1524718 . C . . END=1524732 GT:DP:GQ:MIN_DP:PL 0/0:39:71:39:0,71,1154 +chrX 1524733 . A . . END=1524733 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,825 +chrX 1524734 . C . . END=1524737 GT:DP:GQ:MIN_DP:PL 0/0:37:84:37:0,84,1260 +chrX 1524738 . C . . END=1524740 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,892 +chrX 1524741 . GCATC G, 658.03 . AS_QUALapprox=|672|0;AS_VarDP=0|16|0;DP=22;QUALapprox=672;RAW_GT_COUNT=0,0,1;RAW_MQandDP=62601,22;VarDP=16 GT:AD:DP:GQ:PL:SB 1/1:0,16,0:16:48:672,48,0,672,48,672:0,0,12,4 +chrX 1524746 . C . . END=1524804 GT:DP:GQ:MIN_DP:PL 0/0:22:41:22:0,41,571 +chrX 1524805 . TCATCCATCCATCCATC T,TCATCCATCCATC, 776.02 . AS_QUALapprox=|364|458|0;AS_VarDP=3|10|11|0;BaseQRankSum=1.654;DP=44;MQRankSum=3.673;QUALapprox=793;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126450,44;ReadPosRankSum=-0.473;VarDP=24 GT:AD:DP:GQ:PL:SB 1/2:3,10,11,0:24:99:793,429,746,337,0,335,823,632,394,1001:2,1,13,8 +chrX 1524822 . C . . END=1524889 GT:DP:GQ:MIN_DP:PL 0/0:38:60:38:0,60,1002 +chrX 1524890 . TATCC T,TATCCATCC, 1428.02 . AS_QUALapprox=|854|674|0;AS_VarDP=0|20|16|0;DP=50;QUALapprox=1445;RAW_GT_COUNT=0,0,1;RAW_MQandDP=173079,50;VarDP=36 GT:AD:DP:GQ:PL:SB 1/2:0,20,16,0:36:99:1445,619,591,821,0,771,1444,637,820,1458:0,0,21,15 +chrX 1524895 . A . . END=1525003 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 1525004 . A G, 790.64 . AS_QUALapprox=|798|0;AS_VarDP=38|32|0;BaseQRankSum=-0.958;DP=75;MQRankSum=0.000;QUALapprox=798;RAW_GT_COUNT=0,1,0;RAW_MQandDP=270000,75;ReadPosRankSum=-0.961;VarDP=70 GT:AD:DP:GQ:PL:SB 0/1:38,32,0:70:99:798,0,1029,912,1125,2038:19,19,17,15 +chrX 1525005 . G . . END=1525193 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 1525194 . A G, 1053.64 . AS_QUALapprox=|1061|0;AS_VarDP=28|37|0;BaseQRankSum=1.187;DP=72;MQRankSum=0.000;QUALapprox=1061;RAW_GT_COUNT=0,1,0;RAW_MQandDP=259200,72;ReadPosRankSum=-0.749;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:28,37,0:65:99:1061,0,726,1145,837,1982:12,16,16,21 +chrX 1525195 . G . . END=1525358 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 1525359 . G A, 1952.06 . AS_QUALapprox=|1966|0;AS_VarDP=0|59|0;DP=61;QUALapprox=1966;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1966,177,0,1966,177,1966:0,0,28,31 +chrX 1525360 . G . . END=1525384 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1525385 . C T, 971.64 . AS_QUALapprox=|979|0;AS_VarDP=28|36|0;BaseQRankSum=-1.106;DP=65;MQRankSum=0.000;QUALapprox=979;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=-0.081;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:28,36,0:64:99:979,0,736,1063,844,1907:13,15,19,17 +chrX 1525386 . T . . END=1525439 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 1525440 . T C, 876.64 . AS_QUALapprox=|884|0;AS_VarDP=27|31|0;BaseQRankSum=2.082;DP=61;MQRankSum=0.000;QUALapprox=884;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-0.990;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:27,31,0:58:99:884,0,664,964,758,1722:15,12,16,15 +chrX 1525441 . T . . END=1525912 GT:DP:GQ:MIN_DP:PL 0/0:61:87:61:0,87,1502 +chrX 1525913 . C . . END=1525949 GT:DP:GQ:MIN_DP:PL 0/0:59:0:59:0,0,1082 +chrX 1525950 . A T, 684.64 . AS_QUALapprox=|692|0;AS_VarDP=22|26|0;BaseQRankSum=-0.463;DP=61;MQRankSum=0.000;QUALapprox=692;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=0.921;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:22,26,0:48:99:692,0,576,820,707,1827:10,12,11,15 +chrX 1525951 . T . . END=1525987 GT:DP:GQ:MIN_DP:PL 0/0:63:0:63:0,0,1255 +chrX 1525988 . C . . END=1526270 GT:DP:GQ:MIN_DP:PL 0/0:63:91:63:0,91,1456 +chrX 1526271 . G . . END=1526271 GT:DP:GQ:MIN_DP:PL 0/0:58:12:58:0,12,1500 +chrX 1526272 . C . . END=1526321 GT:DP:GQ:MIN_DP:PL 0/0:59:70:59:0,70,1375 +chrX 1526322 . C A, 645.64 . AS_QUALapprox=|653|0;AS_VarDP=27|25|0;BaseQRankSum=-1.248;DP=53;MQRankSum=0.000;QUALapprox=653;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=-1.027;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:27,25,0:52:99:653,0,737,734,812,1546:16,11,13,12 +chrX 1526323 . C . . END=1526420 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 1526421 . T C, 1544.06 . AS_QUALapprox=|1558|0;AS_VarDP=0|41|0;DP=54;QUALapprox=1558;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=41 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,41,0:41:99:0|1:1526421_T_C:1558,123,0,1633,155,1883:1526421:0,0,18,23 +chrX 1526422 . C . . END=1526442 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 1526443 . G A, 663.67 . AS_QUALapprox=|673|0;AS_VarDP=21|26|0;BaseQRankSum=0.123;DP=48;MQRankSum=0.000;QUALapprox=673;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=0.730;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,26,0:47:99:0|1:1526421_T_C:673,0,504,717,627,1544:1526421:12,9,7,14 +chrX 1526444 . C . . END=1526530 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,118,1501 +chrX 1526531 . T G, 887.64 . AS_QUALapprox=|895|0;AS_VarDP=19|35|0;BaseQRankSum=-2.038;DP=55;MQRankSum=0.000;QUALapprox=895;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-0.417;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:19,35,0:54:99:895,0,489,952,592,1544:7,12,15,20 +chrX 1526532 . G . . END=1526679 GT:DP:GQ:MIN_DP:PL 0/0:54:46:54:0,46,1429 +chrX 1526680 . T TCATC, 497.60 . AS_QUALapprox=|505|0;AS_VarDP=24|14|0;BaseQRankSum=1.565;DP=47;MQRankSum=0.000;QUALapprox=505;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=-1.591;VarDP=38 GT:AD:DP:GQ:PL:SB 0/1:24,14,0:38:99:505,0,958,578,1000,1578:12,12,9,5 +chrX 1526681 . C . . END=1526922 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,113,1709 +chrX 1526923 . C T, 829.64 . AS_QUALapprox=|837|0;AS_VarDP=31|31|0;BaseQRankSum=2.003;DP=67;MQRankSum=0.000;QUALapprox=837;RAW_GT_COUNT=0,1,0;RAW_MQandDP=240964,67;ReadPosRankSum=1.091;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:31,31,0:62:99:837,0,766,930,859,1788:20,11,18,13 +chrX 1526924 . A . . END=1526958 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1526959 . T C, 762.64 . AS_QUALapprox=|770|0;AS_VarDP=34|30|0;BaseQRankSum=-0.559;DP=65;MQRankSum=0.000;QUALapprox=770;RAW_GT_COUNT=0,1,0;RAW_MQandDP=233764,65;ReadPosRankSum=-0.323;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:34,30,0:64:99:770,0,919,873,1009,1882:20,14,15,15 +chrX 1526960 . C . . END=1527232 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 1527233 . C T, 1068.64 . AS_QUALapprox=|1076|0;AS_VarDP=33|30|0;BaseQRankSum=-1.735;DP=64;MQRankSum=0.000;QUALapprox=1076;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=-0.816;VarDP=63 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:33,30,0:63:99:0|1:1527233_C_T:1076,0,1222,1175,1312,2487:1527233:12,21,16,14 +chrX 1527234 . T . . END=1527242 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 1527243 . G A, 1047.64 . AS_QUALapprox=|1055|0;AS_VarDP=34|29|0;BaseQRankSum=-0.044;DP=65;MQRankSum=0.000;QUALapprox=1055;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=-0.028;VarDP=63 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:34,29,0:63:99:0|1:1527233_C_T:1055,0,1197,1156,1284,2440:1527233:12,22,14,15 +chrX 1527244 . T . . END=1527379 GT:DP:GQ:MIN_DP:PL 0/0:62:98:62:0,98,1504 +chrX 1527380 . C A, 627.64 . AS_QUALapprox=|635|0;AS_VarDP=28|23|0;BaseQRankSum=2.025;DP=53;MQRankSum=0.000;QUALapprox=635;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=0.521;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:28,23,0:51:99:635,0,774,719,843,1562:16,12,10,13 +chrX 1527381 . A . . END=1527705 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,111,1752 +chrX 1527706 . TATCC T, 352.60 . AS_QUALapprox=|360|0;AS_VarDP=34|11|0;BaseQRankSum=0.556;DP=65;MQRankSum=0.000;QUALapprox=360;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=-1.810;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:34,11,0:45:99:360,0,1372,463,1406,1868:17,17,5,6 +chrX 1527711 . A . . END=1527850 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 1527851 . G A, 729.64 . AS_QUALapprox=|737|0;AS_VarDP=35|22|0;BaseQRankSum=0.385;DP=58;MQRankSum=0.000;QUALapprox=737;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-1.009;VarDP=57 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:35,22,0:57:99:0|1:1527851_G_A:737,0,1335,842,1401,2244:1527851:24,11,15,7 +chrX 1527852 . C . . END=1527871 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1527872 . C T, 552.64 . AS_QUALapprox=|560|0;AS_VarDP=37|16|0;BaseQRankSum=0.275;DP=54;MQRankSum=0.000;QUALapprox=560;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=-0.058;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:37,16,0:53:99:0|1:1527851_G_A:560,0,1422,672,1470,2142:1527851:23,14,11,5 +chrX 1527873 . A . . END=1528200 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1528201 . G A, 764.64 . AS_QUALapprox=|772|0;AS_VarDP=28|29|0;BaseQRankSum=-0.729;DP=58;MQRankSum=0.000;QUALapprox=772;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=0.000;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:28,29,0:57:99:772,0,772,856,859,1714:14,14,20,9 +chrX 1528202 . C . . END=1528230 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 1528231 . G A, 1883.06 . AS_QUALapprox=|1897|0;AS_VarDP=0|56|0;DP=57;QUALapprox=1897;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1897,168,0,1897,168,1897:0,0,32,24 +chrX 1528232 . G . . END=1528305 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1528306 . A C, 568.64 . AS_QUALapprox=|576|0;AS_VarDP=33|23|0;BaseQRankSum=-0.117;DP=57;MQRankSum=0.000;QUALapprox=576;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=0.208;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:33,23,0:56:99:576,0,882,674,951,1625:19,14,11,12 +chrX 1528307 . A . . END=1528803 GT:DP:GQ:MIN_DP:PL 0/0:73:81:73:0,81,1800 +chrX 1528804 . T A, 897.64 . AS_QUALapprox=|905|0;AS_VarDP=35|34|0;BaseQRankSum=0.009;DP=74;MQRankSum=0.000;QUALapprox=905;RAW_GT_COUNT=0,1,0;RAW_MQandDP=265201,74;ReadPosRankSum=1.254;VarDP=69 GT:AD:DP:GQ:PL:SB 0/1:35,34,0:69:99:905,0,924,1010,1026,2036:12,23,20,14 +chrX 1528805 . T . . END=1528915 GT:DP:GQ:MIN_DP:PL 0/0:82:99:82:0,120,1800 +chrX 1528916 . G T, 1142.64 . AS_QUALapprox=|1150|0;AS_VarDP=30|40|0;BaseQRankSum=-0.080;DP=71;MQRankSum=0.000;QUALapprox=1150;RAW_GT_COUNT=0,1,0;RAW_MQandDP=255600,71;ReadPosRankSum=-0.148;VarDP=70 GT:AD:DP:GQ:PL:SB 0/1:30,40,0:70:99:1150,0,798,1240,918,2158:7,23,13,27 +chrX 1528917 . G . . END=1529311 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,119,1778 +chrX 1529312 . T A, 762.64 . AS_QUALapprox=|770|0;AS_VarDP=25|28|0;BaseQRankSum=0.162;DP=57;MQRankSum=0.000;QUALapprox=770;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-0.187;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:25,28,0:53:99:770,0,665,844,749,1593:19,6,12,16 +chrX 1529313 . G . . END=1529503 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1529504 . T G, 722.64 . AS_QUALapprox=|730|0;AS_VarDP=42|29|0;BaseQRankSum=-0.620;DP=73;MQRankSum=0.000;QUALapprox=730;RAW_GT_COUNT=0,1,0;RAW_MQandDP=262800,73;ReadPosRankSum=-1.094;VarDP=71 GT:AD:DP:GQ:PL:SB 0/1:42,29,0:71:99:730,0,1182,855,1269,2124:20,22,15,14 +chrX 1529505 . G . . END=1529622 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1529623 . C T, 799.64 . AS_QUALapprox=|807|0;AS_VarDP=32|31|0;BaseQRankSum=0.009;DP=66;MQRankSum=0.000;QUALapprox=807;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=-1.877;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:32,31,0:63:99:807,0,1219,903,1312,2215:12,20,10,21 +chrX 1529624 . C . . END=1529624 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1529625 . C A, 778.64 . AS_QUALapprox=|786|0;AS_VarDP=33|31|0;BaseQRankSum=0.969;DP=66;MQRankSum=0.000;QUALapprox=786;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=2.297;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:33,31,0:64:99:786,0,1260,885,1352,2237:11,22,11,20 +chrX 1529626 . T . . END=1529664 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 1529665 . C T, 979.64 . AS_QUALapprox=|987|0;AS_VarDP=31|35|0;BaseQRankSum=2.170;DP=67;MQRankSum=0.000;QUALapprox=987;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=1.170;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:31,35,0:66:99:987,0,774,1080,879,1959:14,17,14,21 +chrX 1529666 . C . . END=1529776 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 1529777 . C T, 444.64 . AS_QUALapprox=|452|0;AS_VarDP=39|19|0;BaseQRankSum=1.058;DP=61;MQRankSum=0.000;QUALapprox=452;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-0.953;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:39,19,0:58:99:452,0,1077,569,1134,1702:20,19,13,6 +chrX 1529778 . T . . END=1529883 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 1529884 . T G, 732.64 . AS_QUALapprox=|740|0;AS_VarDP=20|26|0;BaseQRankSum=1.682;DP=48;MQRankSum=0.000;QUALapprox=740;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=0.654;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:20,26,0:46:99:0|1:1529884_T_G:740,0,750,800,828,1628:1529884:12,8,19,7 +chrX 1529885 . C . . END=1529889 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,120,1800 +chrX 1529890 . G A, 461.64 . AS_QUALapprox=|469|0;AS_VarDP=23|19|0;BaseQRankSum=-2.564;DP=45;MQRankSum=0.000;QUALapprox=469;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=-1.378;VarDP=42 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:23,19,0:42:99:1|0:1529884_T_G:469,0,909,538,966,1504:1529884:16,7,11,8 +chrX 1529891 . A . . END=1529988 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 1529989 . C A, 824.64 . AS_QUALapprox=|832|0;AS_VarDP=27|30|0;BaseQRankSum=0.732;DP=59;MQRankSum=0.000;QUALapprox=832;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=0.799;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:27,30,0:57:99:832,0,653,912,743,1655:10,17,13,17 +chrX 1529990 . C . . END=1530065 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 1530066 . C T, 674.64 . AS_QUALapprox=|682|0;AS_VarDP=27|26|0;BaseQRankSum=-2.048;DP=55;MQRankSum=0.000;QUALapprox=682;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-0.329;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:27,26,0:53:99:682,0,769,763,847,1610:9,18,10,16 +chrX 1530067 . T . . END=1530148 GT:DP:GQ:MIN_DP:PL 0/0:50:54:50:0,54,810 +chrX 1530149 . GTATGTATGATCTATCTATCTATCTATCTATCTATC G,GTATCTATCTATCTATCTATC, 735.60 . AS_QUALapprox=|158|743|0;AS_VarDP=17|0|14|0;BaseQRankSum=-0.093;DP=51;MQRankSum=1.351;QUALapprox=743;RAW_GT_COUNT=0,1,0;RAW_MQandDP=181018,51;ReadPosRankSum=2.224;VarDP=31 GT:AD:DP:GQ:PL:SB 0/2:17,0,14,0:31:99:743,585,1533,0,678,816,725,1432,805,1611:11,6,8,6 +chrX 1530157 . GATCTATCTATCTATCTATC *,G,GTATCTATCTATCTATCTATC, 608.01 . AS_QUALapprox=|0|896|519|0;AS_VarDP=0|20|9|0|0;DP=46;QUALapprox=1833;RAW_GT_COUNT=0,0,1;RAW_MQandDP=163018,46;VarDP=29 GT:AD:DP:GQ:PL:SB 1/2:0,20,9,0,0:29:99:1833,661,605,998,0,937,1355,365,803,1314,1814,658,998,1355,1811:0,0,16,13 +chrX 1530180 . C *,G, 385.04 . AS_QUALapprox=|0|450|0;AS_VarDP=19|0|9|0;BaseQRankSum=0.094;DP=46;MQRankSum=-1.376;QUALapprox=450;RAW_GT_COUNT=0,1,0;RAW_MQandDP=163018,46;ReadPosRankSum=0.567;VarDP=28 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|2:19,0,9,0:28:99:0|1:1530180_C_*:450,365,1432,0,804,988,472,1332,941,1494:1530180:13,6,5,4 +chrX 1530184 . C *,G, 385.04 . AS_QUALapprox=|0|445|0;AS_VarDP=21|0|9|0;BaseQRankSum=-1.340;DP=49;MQRankSum=-1.455;QUALapprox=445;RAW_GT_COUNT=0,1,0;RAW_MQandDP=173818,49;ReadPosRankSum=1.108;VarDP=30 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|2:21,0,9,0:30:99:0|1:1530180_C_*:445,365,1505,0,877,1062,472,1405,1015,1567:1530180:15,6,5,4 +chrX 1530185 . T . . END=1530202 GT:DP:GQ:MIN_DP:PL 0/0:45:81:45:0,81,1215 +chrX 1530203 . T C, 817.64 . AS_QUALapprox=|825|0;AS_VarDP=19|22|0;BaseQRankSum=-1.298;DP=47;MQRankSum=1.125;QUALapprox=825;RAW_GT_COUNT=0,1,0;RAW_MQandDP=168849,47;ReadPosRankSum=0.745;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:19,22,0:41:99:825,0,642,883,708,1591:10,9,15,7 +chrX 1530204 . C . . END=1530268 GT:DP:GQ:MIN_DP:PL 0/0:43:96:43:0,96,1177 +chrX 1530269 . T TTATCTACCTATC, 1005.60 . AS_QUALapprox=|1013|0;AS_VarDP=17|28|0;BaseQRankSum=-2.191;DP=46;MQRankSum=0.000;QUALapprox=1013;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=1.101;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:17,28,0:45:99:1013,0,580,1064,663,1728:13,4,14,14 +chrX 1530270 . T . . END=1530333 GT:DP:GQ:MIN_DP:PL 0/0:48:93:48:0,93,1395 +chrX 1530334 . A ATATC, 581.60 . AS_QUALapprox=|589|0;AS_VarDP=25|16|0;BaseQRankSum=-0.523;DP=51;MQRankSum=0.000;QUALapprox=589;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=0.134;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:25,16,0:41:99:589,0,980,664,1028,1693:14,11,8,8 +chrX 1530335 . T . . END=1530413 GT:DP:GQ:MIN_DP:PL 0/0:54:90:54:0,90,1445 +chrX 1530414 . C T, 796.64 . AS_QUALapprox=|804|0;AS_VarDP=36|30|0;BaseQRankSum=1.222;DP=67;MQRankSum=0.000;QUALapprox=804;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=-0.812;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:36,30,0:66:99:804,0,948,912,1038,1950:17,19,14,16 +chrX 1530415 . C . . END=1530512 GT:DP:GQ:MIN_DP:PL 0/0:65:70:65:0,70,1781 +chrX 1530513 . C CTAATTTA, 930.60 . AS_QUALapprox=|938|0;AS_VarDP=30|25|0;BaseQRankSum=-0.776;DP=64;MQRankSum=0.000;QUALapprox=938;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=0.473;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:30,25,0:55:99:938,0,1175,1029,1250,2279:14,16,10,15 +chrX 1530514 . T . . END=1530572 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,116,1524 +chrX 1530573 . G GATCT, 741.60 . AS_QUALapprox=|749|0;AS_VarDP=30|20|0;BaseQRankSum=2.005;DP=54;MQRankSum=0.000;QUALapprox=749;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=-0.258;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:30,20,0:50:99:749,0,1150,840,1210,2050:16,14,8,12 +chrX 1530574 . A . . END=1530760 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,108,1646 +chrX 1530761 . A G, 703.64 . AS_QUALapprox=|711|0;AS_VarDP=35|27|0;BaseQRankSum=1.162;DP=62;MQRankSum=0.000;QUALapprox=711;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=0.554;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:35,27,0:62:99:711,0,1358,817,1439,2256:17,18,16,11 +chrX 1530762 . T . . END=1530764 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 1530765 . C CTATT, 1351.60 . AS_QUALapprox=|1359|0;AS_VarDP=30|35|0;BaseQRankSum=-1.537;DP=67;MQRankSum=0.000;QUALapprox=1359;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=-0.099;VarDP=65 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:30,35,0:65:99:0|1:1530765_C_CTATT:1359,0,1134,1449,1239,2689:1530765:18,12,17,18 +chrX 1530766 . T . . END=1530788 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1530789 . TTCTA T, 1323.60 . AS_QUALapprox=|1331|0;AS_VarDP=28|34|0;BaseQRankSum=0.323;DP=63;MQRankSum=0.000;QUALapprox=1331;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=0.436;VarDP=62 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,34,0:62:99:0|1:1530765_C_CTATT:1331,0,1073,1416,1176,2591:1530765:17,11,18,16 +chrX 1530794 . T . . END=1530867 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 1530868 . T TTCTATCTA, 1212.60 . AS_QUALapprox=|1220|0;AS_VarDP=27|31|0;BaseQRankSum=0.603;DP=68;MQRankSum=0.000;QUALapprox=1220;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=-0.133;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:27,31,0:58:99:1220,0,1021,1302,1115,2416:15,12,17,14 +chrX 1530869 . T . . END=1530905 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1530906 . CATCT C, 974.60 . AS_QUALapprox=|982|0;AS_VarDP=30|26|0;BaseQRankSum=1.401;DP=65;MQRankSum=0.000;QUALapprox=982;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=-0.182;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:30,26,0:56:99:0|1:1530906_CATCT_C:982,0,1161,1072,1239,2312:1530906:15,15,13,13 +chrX 1530911 . A . . END=1530937 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 1530938 . GTATC G, 936.60 . AS_QUALapprox=|944|0;AS_VarDP=35|25|0;BaseQRankSum=1.095;DP=61;MQRankSum=0.000;QUALapprox=944;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-0.662;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:35,25,0:60:99:0|1:1530906_CATCT_C:944,0,1394,1050,1470,2519:1530906:14,21,12,13 +chrX 1530943 . T . . END=1530963 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1530964 . C CATGT, 1224.60 . AS_QUALapprox=|1232|0;AS_VarDP=36|33|0;BaseQRankSum=-0.053;DP=70;MQRankSum=0.000;QUALapprox=1232;RAW_GT_COUNT=0,1,0;RAW_MQandDP=252000,70;ReadPosRankSum=-1.369;VarDP=69 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:36,33,0:69:99:0|1:1530906_CATCT_C:1232,0,1413,1340,1512,2852:1530906:15,21,19,14 +chrX 1530965 . A . . END=1531055 GT:DP:GQ:MIN_DP:PL 0/0:64:38:59:0,38,1485 +chrX 1531056 . G A, 1762.06 . AS_QUALapprox=|1776|0;AS_VarDP=0|56|0;DP=56;QUALapprox=1776;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1776,167,0,1776,167,1776:0,0,26,30 +chrX 1531057 . T . . END=1531067 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 1531068 . G GTCTATCTA, 1069.60 . AS_QUALapprox=|1077|0;AS_VarDP=19|28|0;BaseQRankSum=-0.545;DP=61;MQRankSum=0.000;QUALapprox=1077;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-3.319;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:19,28,0:47:99:1077,0,699,1135,783,1918:8,11,13,15 +chrX 1531069 . T . . END=1531100 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 1531101 . A . . END=1531102 GT:DP:GQ:MIN_DP:PL 0/0:61:0:61:0,0,1413 +chrX 1531103 . T . . END=1531401 GT:DP:GQ:MIN_DP:PL 0/0:60:26:59:0,26,1547 +chrX 1531402 . A T, 750.64 . AS_QUALapprox=|758|0;AS_VarDP=30|27|0;BaseQRankSum=0.957;DP=57;MQRankSum=0.000;QUALapprox=758;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-0.240;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:30,27,0:57:99:758,0,826,847,907,1755:17,13,15,12 +chrX 1531403 . T . . END=1531638 GT:DP:GQ:MIN_DP:PL 0/0:60:91:60:0,91,1529 +chrX 1531639 . A G, 564.64 . AS_QUALapprox=|572|0;AS_VarDP=25|21|0;BaseQRankSum=1.324;DP=46;MQRankSum=0.000;QUALapprox=572;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=-0.452;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:25,21,0:46:99:572,0,691,647,755,1401:8,17,7,14 +chrX 1531640 . G . . END=1531699 GT:DP:GQ:MIN_DP:PL 0/0:51:61:44:0,61,1463 +chrX 1531700 . A C, 758.64 . AS_QUALapprox=|766|0;AS_VarDP=30|29|0;BaseQRankSum=-0.450;DP=62;MQRankSum=0.000;QUALapprox=766;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=0.933;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:30,29,0:59:99:766,0,824,856,910,1766:10,20,12,17 +chrX 1531701 . G . . END=1531769 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 1531770 . T C, 750.64 . AS_QUALapprox=|758|0;AS_VarDP=26|27|0;BaseQRankSum=-0.533;DP=56;MQRankSum=0.000;QUALapprox=758;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=0.142;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:26,27,0:53:99:758,0,734,836,816,1652:10,16,14,13 +chrX 1531771 . C . . END=1531808 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 1531809 . G C, 679.64 . AS_QUALapprox=|687|0;AS_VarDP=25|24|0;BaseQRankSum=2.553;DP=53;MQRankSum=0.000;QUALapprox=687;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=-0.100;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:25,24,0:49:99:687,0,661,762,733,1495:12,13,12,12 +chrX 1531810 . C . . END=1531819 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,120,1800 +chrX 1531820 . C T, 618.64 . AS_QUALapprox=|626|0;AS_VarDP=25|23|0;BaseQRankSum=0.354;DP=49;MQRankSum=0.000;QUALapprox=626;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=0.103;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:25,23,0:48:99:626,0,670,700,739,1439:12,13,12,11 +chrX 1531821 . G . . END=1531860 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,102,1330 +chrX 1531861 . T C, 586.64 . AS_QUALapprox=|594|0;AS_VarDP=21|22|0;BaseQRankSum=-0.789;DP=44;MQRankSum=0.000;QUALapprox=594;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=-0.875;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:21,22,0:43:99:594,0,581,657,647,1304:11,10,14,8 +chrX 1531862 . C . . END=1531953 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,108,1470 +chrX 1531954 . C T, 694.64 . AS_QUALapprox=|702|0;AS_VarDP=26|26|0;BaseQRankSum=1.072;DP=54;MQRankSum=0.000;QUALapprox=702;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=-0.513;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:26,26,0:52:99:702,0,673,780,751,1530:17,9,17,9 +chrX 1531955 . T . . END=1531972 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 1531973 . G C, 734.64 . AS_QUALapprox=|742|0;AS_VarDP=30|29|0;BaseQRankSum=0.460;DP=59;MQRankSum=0.000;QUALapprox=742;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-0.667;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:30,29,0:59:99:742,0,771,831,858,1689:16,14,19,10 +chrX 1531974 . T . . END=1532081 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1532082 . C T, 742.64 . AS_QUALapprox=|750|0;AS_VarDP=30|29|0;BaseQRankSum=-0.362;DP=61;MQRankSum=0.000;QUALapprox=750;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=1.373;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:30,29,0:59:99:750,0,794,840,881,1722:13,17,12,17 +chrX 1532083 . A . . END=1532137 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1532138 . G A, 705.64 . AS_QUALapprox=|713|0;AS_VarDP=27|25|0;BaseQRankSum=2.726;DP=53;MQRankSum=0.000;QUALapprox=713;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=0.376;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:27,25,0:52:99:713,0,712,794,787,1581:7,20,13,12 +chrX 1532139 . C . . END=1532313 GT:DP:GQ:MIN_DP:PL 0/0:53:47:53:0,47,1024 +chrX 1532314 . A . . END=1532314 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,1047 +chrX 1532315 . T . . END=1532316 GT:DP:GQ:MIN_DP:PL 0/0:44:34:43:0,34,1134 +chrX 1532317 . C . . END=1532317 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,948 +chrX 1532318 . A . . END=1532318 GT:DP:GQ:MIN_DP:PL 0/0:41:54:41:0,54,1216 +chrX 1532319 . C . . END=1532319 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,958 +chrX 1532320 . A . . END=1532320 GT:DP:GQ:MIN_DP:PL 0/0:41:64:41:0,64,1256 +chrX 1532321 . C . . END=1532322 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,917 +chrX 1532323 . C CAT, 558.60 . AS_QUALapprox=|566|0;AS_VarDP=14|15|0;BaseQRankSum=0.670;DP=33;MQRankSum=1.104;QUALapprox=566;RAW_GT_COUNT=0,1,0;RAW_MQandDP=114685,33;ReadPosRankSum=-1.397;VarDP=29 GT:AD:DP:GQ:PL:SB 0/1:14,15,0:29:99:566,0,543,608,588,1196:5,9,6,9 +chrX 1532324 . G . . END=1532336 GT:DP:GQ:MIN_DP:PL 0/0:31:53:29:0,53,766 +chrX 1532337 . T *,TATGTATATGATGTGTATATATACACATATGTATATGATGTGTATATACACAC, 89.01 . AS_QUALapprox=|0|503|0;AS_VarDP=14|0|3|0;BaseQRankSum=0.832;DP=32;MQRankSum=-3.883;QUALapprox=503;RAW_GT_COUNT=0,1,0;RAW_MQandDP=108189,32;ReadPosRankSum=-1.704;VarDP=17 GT:AD:DP:GQ:PL:SB 0/2:14,0,3,0:17:69:503,69,633,0,541,571,332,662,597,900:5,9,2,1 +chrX 1532338 . A . . END=1532369 GT:DP:GQ:MIN_DP:PL 0/0:27:37:24:0,37,674 +chrX 1532370 . C T,*, 677.05 . AS_QUALapprox=|1047|0|0;AS_VarDP=0|17|0|0;DP=31;QUALapprox=1047;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97598,31;VarDP=17 GT:AD:DP:GQ:PL:SB 1/1:0,17,0,0:17:53:1047,87,0,664,53,726,882,86,720,888:0,0,8,9 +chrX 1532371 . G . . END=1532389 GT:DP:GQ:MIN_DP:PL 0/0:25:37:22:0,37,592 +chrX 1532390 . G A, 185.64 . AS_QUALapprox=|193|0;AS_VarDP=8|6|0;BaseQRankSum=0.150;DP=28;MQRankSum=-2.968;QUALapprox=193;RAW_GT_COUNT=0,1,0;RAW_MQandDP=83727,28;ReadPosRankSum=-2.458;VarDP=14 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:8,6,0:14:99:0|1:1532390_G_A:193,0,312,221,330,551:1532390:3,5,5,1 +chrX 1532391 . C . . END=1532407 GT:DP:GQ:MIN_DP:PL 0/0:28:44:23:0,44,573 +chrX 1532408 . G GTGTGTATATACACA, 259.60 . AS_QUALapprox=|267|0;AS_VarDP=23|8|0;BaseQRankSum=0.746;DP=34;MQRankSum=-4.666;QUALapprox=267;RAW_GT_COUNT=0,1,0;RAW_MQandDP=99156,34;ReadPosRankSum=-2.552;VarDP=31 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,8,0:31:99:0|1:1532408_G_GTGTGTATATACACA:267,0,942,336,966,1302:1532408:9,14,7,1 +chrX 1532409 . T . . END=1532413 GT:DP:GQ:MIN_DP:PL 0/0:30:87:30:0,87,993 +chrX 1532414 . G GTATAT, 256.60 . AS_QUALapprox=|264|0;AS_VarDP=24|8|0;BaseQRankSum=1.388;DP=35;MQRankSum=-4.750;QUALapprox=264;RAW_GT_COUNT=0,1,0;RAW_MQandDP=103005,35;ReadPosRankSum=-2.005;VarDP=32 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,8,0:32:99:0|1:1532408_G_GTGTGTATATACACA:264,0,984,336,1008,1344:1532408:10,14,7,1 +chrX 1532415 . A . . END=1532420 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,952 +chrX 1532421 . A G, 301.64 . AS_QUALapprox=|309|0;AS_VarDP=7|8|0;BaseQRankSum=1.282;DP=35;MQRankSum=-3.229;QUALapprox=309;RAW_GT_COUNT=0,1,0;RAW_MQandDP=103005,35;ReadPosRankSum=-0.168;VarDP=15 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:7,8,0:15:99:0|1:1532390_G_A:309,0,266,336,290,626:1532390:2,5,7,1 +chrX 1532422 . T . . END=1532447 GT:DP:GQ:MIN_DP:PL 0/0:33:55:32:0,55,724 +chrX 1532448 . T TATG, 393.60 . AS_QUALapprox=|401|0;AS_VarDP=4|10|0;BaseQRankSum=0.000;DP=36;MQRankSum=-1.804;QUALapprox=401;RAW_GT_COUNT=0,1,0;RAW_MQandDP=109604,36;ReadPosRankSum=2.622;VarDP=14 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:4,10,0:14:99:0|1:1532390_G_A:401,0,135,420,165,585:1532390:0,4,9,1 +chrX 1532449 . A . . END=1532452 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1028 +chrX 1532453 . GTATATATACACATATA G, 64.60 . AS_QUALapprox=|72|0;AS_VarDP=11|3|0;BaseQRankSum=0.000;DP=38;MQRankSum=1.640;QUALapprox=72;RAW_GT_COUNT=0,1,0;RAW_MQandDP=116804,38;ReadPosRankSum=-2.454;VarDP=14 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:11,3,0:14:72:0|1:1532453_GTATATATACACATATA_G:72,0,446,105,462,567:1532453:9,2,0,3 +chrX 1532455 . A *,G, 349.26 . AS_QUALapprox=|0|349|0;AS_VarDP=0|3|10|0;DP=36;QUALapprox=469;RAW_GT_COUNT=0,0,1;RAW_MQandDP=109604,36;VarDP=13 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|2:0,3,10,0:13:99:0|1:1532408_G_GTGTGTATATACACA:469,364,348,120,0,978,537,419,596,948:1532408:0,0,9,4 +chrX 1532470 . T . . END=1532470 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,1305 +chrX 1532471 . GTATAGATGTATATGTGTA G, 54.60 . AS_QUALapprox=|62|0;AS_VarDP=14|3|0;BaseQRankSum=0.897;DP=40;MQRankSum=1.402;QUALapprox=62;RAW_GT_COUNT=0,1,0;RAW_MQandDP=124004,40;ReadPosRankSum=-2.494;VarDP=17 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:14,3,0:17:62:0|1:1532453_GTATATATACACATATA_G:62,0,572,104,588,692:1532453:11,3,0,3 +chrX 1532476 . G *,T, 491.01 . AS_QUALapprox=|0|1347|0;AS_VarDP=0|3|12|0;DP=38;QUALapprox=1434;RAW_GT_COUNT=0,0,1;RAW_MQandDP=116804,38;VarDP=15 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|2:0,3,12,0:15:87:0|1:1532390_G_A:1434,557,488,170,0,87,1083,556,176,1031:1532390:0,0,9,6 +chrX 1532482 . T *,TATG, 520.22 . AS_QUALapprox=|0|520|0;AS_VarDP=0|3|14|0;DP=39;QUALapprox=639;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122483,39;VarDP=17 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|2:0,3,14,0:17:99:0|1:1532408_G_GTGTGTATATACACA:639,535,519,119,0,924,704,587,574,1096:1532408:0,0,11,6 +chrX 1532489 . A *,G, 575.01 . AS_QUALapprox=|0|1437|0;AS_VarDP=0|3|14|0;DP=39;QUALapprox=1518;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122483,39;VarDP=17 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|2:0,3,14,0:17:81:0|1:1532390_G_A:1518,641,572,170,0,81,1167,640,176,1115:1532390:0,0,11,6 +chrX 1532490 . T . . END=1532509 GT:DP:GQ:MIN_DP:PL 0/0:36:64:36:0,64,987 +chrX 1532510 . G T, 434.64 . AS_QUALapprox=|442|0;AS_VarDP=22|14|0;BaseQRankSum=-0.505;DP=40;MQRankSum=-1.049;QUALapprox=442;RAW_GT_COUNT=0,1,0;RAW_MQandDP=136100,40;ReadPosRankSum=-1.280;VarDP=36 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,14,0:36:99:0|1:1532408_G_GTGTGTATATACACA:442,0,873,509,915,1424:1532408:8,14,9,5 +chrX 1532511 . A . . END=1532591 GT:DP:GQ:MIN_DP:PL 0/0:39:85:39:0,85,1007 +chrX 1532592 . G A, 564.64 . AS_QUALapprox=|572|0;AS_VarDP=19|22|0;BaseQRankSum=-0.507;DP=46;MQRankSum=0.000;QUALapprox=572;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=0.562;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:19,22,0:41:99:572,0,468,628,534,1162:12,7,10,12 +chrX 1532593 . C . . END=1532659 GT:DP:GQ:MIN_DP:PL 0/0:43:88:43:0,88,1245 +chrX 1532660 . G A, 740.64 . AS_QUALapprox=|748|0;AS_VarDP=23|27|0;BaseQRankSum=0.758;DP=55;MQRankSum=0.000;QUALapprox=748;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=0.818;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:23,27,0:50:99:748,0,569,817,650,1467:15,8,15,12 +chrX 1532661 . T . . END=1532726 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,109,1488 +chrX 1532727 . T C, 656.64 . AS_QUALapprox=|664|0;AS_VarDP=29|26|0;BaseQRankSum=-1.287;DP=57;MQRankSum=0.983;QUALapprox=664;RAW_GT_COUNT=0,1,0;RAW_MQandDP=204849,57;ReadPosRankSum=0.961;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:29,26,0:55:99:664,0,813,751,891,1642:16,13,17,9 +chrX 1532728 . G . . END=1532790 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 1532791 . G C, 880.64 . AS_QUALapprox=|888|0;AS_VarDP=22|31|0;BaseQRankSum=1.310;DP=56;MQRankSum=0.301;QUALapprox=888;RAW_GT_COUNT=0,1,0;RAW_MQandDP=196275,56;ReadPosRankSum=-0.027;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:22,31,0:53:99:888,0,555,954,649,1602:13,9,19,12 +chrX 1532792 . G . . END=1532932 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,106,1424 +chrX 1532933 . A G, 1479.06 . AS_QUALapprox=|1493|0;AS_VarDP=1|45|0;BaseQRankSum=3.238;DP=47;MQRankSum=0.000;QUALapprox=1493;RAW_GT_COUNT=0,0,1;RAW_MQandDP=168625,47;ReadPosRankSum=-0.452;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:1,45,0:46:99:1493,113,0,1496,135,1517:1,0,24,21 +chrX 1532934 . A . . END=1532996 GT:DP:GQ:MIN_DP:PL 0/0:43:81:43:0,81,1215 +chrX 1532997 . T C, 299.64 . AS_QUALapprox=|307|0;AS_VarDP=23|13|0;BaseQRankSum=-0.247;DP=37;MQRankSum=0.810;QUALapprox=307;RAW_GT_COUNT=0,1,0;RAW_MQandDP=130625,37;ReadPosRankSum=0.560;VarDP=36 GT:AD:DP:GQ:PL:SB 0/1:23,13,0:36:99:307,0,661,376,699,1076:19,4,7,6 +chrX 1532998 . G . . END=1533000 GT:DP:GQ:MIN_DP:PL 0/0:34:78:34:0,78,1170 +chrX 1533001 . T . . END=1533001 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,872 +chrX 1533002 . CAAA C,CA, 385.60 . AS_QUALapprox=|259|393|0;AS_VarDP=5|6|14|0;DP=52;MQRankSum=2.166;QUALapprox=393;RAW_GT_COUNT=0,1,0;RAW_MQandDP=179573,52;VarDP=25 GT:AD:DP:GQ:PL:SB 0/2:5,6,14,0:25:17:393,134,375,0,17,46,353,339,131,505:0,5,16,4 +chrX 1533006 . A . . END=1533124 GT:DP:GQ:MIN_DP:PL 0/0:46:36:36:0,36,972 +chrX 1533125 . C T, 353.64 . AS_QUALapprox=|361|0;AS_VarDP=28|14|0;BaseQRankSum=2.206;DP=44;MQRankSum=0.000;QUALapprox=361;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=2.363;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:28,14,0:42:99:361,0,737,445,779,1224:15,13,10,4 +chrX 1533126 . G . . END=1533212 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,107,1359 +chrX 1533213 . G C, 457.64 . AS_QUALapprox=|465|0;AS_VarDP=32|18|0;BaseQRankSum=1.059;DP=54;MQRankSum=0.000;QUALapprox=465;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=-0.061;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:32,18,0:50:99:465,0,912,561,966,1527:12,20,11,7 +chrX 1533214 . T . . END=1533289 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 1533290 . T C, 1054.64 . AS_QUALapprox=|1062|0;AS_VarDP=20|38|0;BaseQRankSum=-0.274;DP=58;MQRankSum=0.000;QUALapprox=1062;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-0.450;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:20,38,0:58:99:1062,0,477,1122,590,1712:12,8,14,24 +chrX 1533291 . C . . END=1533479 GT:DP:GQ:MIN_DP:PL 0/0:57:80:57:0,80,1358 +chrX 1533480 . A G, 897.64 . AS_QUALapprox=|905|0;AS_VarDP=24|35|0;BaseQRankSum=0.176;DP=61;MQRankSum=0.000;QUALapprox=905;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-0.401;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:24,35,0:59:99:905,0,649,977,753,1729:13,11,18,17 +chrX 1533481 . T . . END=1533540 GT:DP:GQ:MIN_DP:PL 0/0:53:65:50:0,65,1600 +chrX 1533541 . TTATATATTATATACTTATATATTTATTATTTAAA T, 1082.60 . AS_QUALapprox=|1090|0;AS_VarDP=26|29|0;BaseQRankSum=1.337;DP=61;MQRankSum=0.000;QUALapprox=1090;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-0.295;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:26,29,0:55:99:1090,0,961,1168,1048,2216:11,15,17,12 +chrX 1533566 . AT *,A, 627.01 . AS_QUALapprox=|0|1030|0;AS_VarDP=0|31|23|0;DP=55;QUALapprox=2172;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|2:0,31,23,0:54:99:0|1:1533566_AT_*:2172,756,624,1215,0,1142,2086,747,1218,2051:1533566:0,0,27,27 +chrX 1533569 . ATTTAAATATATTATATACTTATATATTTATT *,A, 609.01 . AS_QUALapprox=|0|940|0;AS_VarDP=0|31|23|0;DP=63;QUALapprox=2160;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|2:0,31,23,0:54:99:0|1:1533566_AT_*:2160,741,606,1220,0,1298,2089,746,1305,2123:1533566:0,0,27,27 +chrX 1533601 . A . . END=1533802 GT:DP:GQ:MIN_DP:PL 0/0:63:63:63:0,63,945 +chrX 1533803 . T C, 456.64 . AS_QUALapprox=|464|0;AS_VarDP=27|18|0;BaseQRankSum=-1.390;DP=47;MQRankSum=0.000;QUALapprox=464;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=-0.179;VarDP=45 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,18,0:45:99:0|1:1533803_T_C:464,0,927,545,981,1526:1533803:12,15,11,7 +chrX 1533804 . A . . END=1533837 GT:DP:GQ:MIN_DP:PL 0/0:38:24:34:0,24,874 +chrX 1533838 . T TTTA, 592.60 . AS_QUALapprox=|600|0;AS_VarDP=18|16|0;BaseQRankSum=-0.505;DP=38;MQRankSum=0.000;QUALapprox=600;RAW_GT_COUNT=0,1,0;RAW_MQandDP=136800,38;ReadPosRankSum=0.570;VarDP=34 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:18,16,0:34:99:1|0:1533803_T_C:600,0,698,655,746,1401:1533803:8,10,8,8 +chrX 1533839 . T . . END=1534031 GT:DP:GQ:MIN_DP:PL 0/0:41:30:36:0,30,927 +chrX 1534032 . C G, 538.64 . AS_QUALapprox=|546|0;AS_VarDP=31|24|0;BaseQRankSum=-0.616;DP=59;MQRankSum=0.000;QUALapprox=546;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-0.518;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:31,24,0:55:99:546,0,808,638,879,1517:22,9,10,14 +chrX 1534033 . T . . END=1534174 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,113,1613 +chrX 1534175 . A G, 1042.64 . AS_QUALapprox=|1050|0;AS_VarDP=34|40|0;BaseQRankSum=-0.007;DP=75;MQRankSum=0.000;QUALapprox=1050;RAW_GT_COUNT=0,1,0;RAW_MQandDP=270000,75;ReadPosRankSum=0.271;VarDP=74 GT:AD:DP:GQ:PL:SB 0/1:34,40,0:74:99:1050,0,850,1150,969,2119:16,18,19,21 +chrX 1534176 . T . . END=1534745 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 1534746 . G C, 751.64 . AS_QUALapprox=|759|0;AS_VarDP=42|31|0;BaseQRankSum=0.402;DP=74;MQRankSum=0.000;QUALapprox=759;RAW_GT_COUNT=0,1,0;RAW_MQandDP=266400,74;ReadPosRankSum=0.246;VarDP=73 GT:AD:DP:GQ:PL:SB 0/1:42,31,0:73:99:759,0,1121,885,1213,2098:23,19,22,9 +chrX 1534747 . C . . END=1534757 GT:DP:GQ:MIN_DP:PL 0/0:73:99:73:0,120,1800 +chrX 1534758 . G A, 798.64 . AS_QUALapprox=|806|0;AS_VarDP=43|31|0;BaseQRankSum=1.625;DP=75;MQRankSum=0.000;QUALapprox=806;RAW_GT_COUNT=0,1,0;RAW_MQandDP=270000,75;ReadPosRankSum=-0.871;VarDP=74 GT:AD:DP:GQ:PL:SB 0/1:43,31,0:74:99:806,0,1117,934,1210,2145:23,20,22,9 +chrX 1534759 . T . . END=1535183 GT:DP:GQ:MIN_DP:PL 0/0:46:33:45:0,33,1241 +chrX 1535184 . C CTT,CTTTTT, 982.02 . AS_QUALapprox=|553|842|0;AS_VarDP=0|6|16|0;DP=41;QUALapprox=999;RAW_GT_COUNT=0,0,1;RAW_MQandDP=135600,41;VarDP=22 GT:AD:DP:GQ:PL:SB 1/2:0,6,16,0:22:99:999,527,446,189,0,157,867,515,210,834:0,0,12,10 +chrX 1535185 . T . . END=1535205 GT:DP:GQ:MIN_DP:PL 0/0:45:48:45:0,48,720 +chrX 1535206 . G . . END=1535212 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,338 +chrX 1535213 . A . . END=1535717 GT:DP:GQ:MIN_DP:PL 0/0:56:49:56:0,49,1066 +chrX 1535718 . CACACACACAG C, 683.60 . AS_QUALapprox=|691|0;AS_VarDP=26|25|0;BaseQRankSum=0.522;DP=63;MQRankSum=-0.981;QUALapprox=691;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226225,63;ReadPosRankSum=1.931;VarDP=51 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,25,0:51:99:0|1:1535718_CACACACACAG_C:691,0,991,770,1067,1837:1535718:10,16,10,15 +chrX 1535726 . CAG *,C, 787.01 . AS_QUALapprox=|0|703|0;AS_VarDP=0|25|21|0;DP=60;QUALapprox=1521;RAW_GT_COUNT=0,0,1;RAW_MQandDP=215425,60;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 2|1:0,25,21,0:46:99:1|0:1535718_CACACACACAG_C:1521,797,985,818,0,1035,1608,947,990,1851:1535718:0,0,19,27 +chrX 1535729 . A . . END=1537515 GT:DP:GQ:MIN_DP:PL 0/0:58:69:58:0,69,1226 +chrX 1537516 . C G, 2213.06 . AS_QUALapprox=|2227|0;AS_VarDP=0|70|0;DP=71;QUALapprox=2227;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;VarDP=70 GT:AD:DP:GQ:PL:SB 1/1:0,70,0:70:99:2227,209,0,2227,209,2227:0,0,35,35 +chrX 1537517 . A . . END=1537817 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,118,1613 +chrX 1537818 . A G, 1897.06 . AS_QUALapprox=|1911|0;AS_VarDP=0|59|0;DP=59;QUALapprox=1911;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1911,177,0,1911,177,1911:0,0,34,25 +chrX 1537819 . T . . END=1537953 GT:DP:GQ:MIN_DP:PL 0/0:68:83:68:0,83,1721 +chrX 1537954 . T . . END=1537954 GT:DP:GQ:MIN_DP:PL 0/0:59:13:59:0,13,1633 +chrX 1537955 . G . . END=1538071 GT:DP:GQ:MIN_DP:PL 0/0:53:78:53:0,78,1380 +chrX 1538072 . A G, 1180.06 . AS_QUALapprox=|1194|0;AS_VarDP=0|36|0;DP=39;QUALapprox=1194;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140400,39;VarDP=36 GT:AD:DP:GQ:PL:SB 1/1:0,36,0:36:99:1194,108,0,1194,108,1194:0,0,16,20 +chrX 1538073 . C . . END=1538748 GT:DP:GQ:MIN_DP:PL 0/0:48:20:37:0,20,1015 +chrX 1538749 . C CA, 239.60 . AS_QUALapprox=|247|0;AS_VarDP=6|15|0;BaseQRankSum=0.599;DP=42;MQRankSum=-0.527;QUALapprox=247;RAW_GT_COUNT=0,1,0;RAW_MQandDP=149200,42;ReadPosRankSum=-1.151;VarDP=21 GT:AD:DP:GQ:PL:SB 0/1:6,15,0:21:51:247,0,51,265,95,360:4,2,6,9 +chrX 1538750 . A . . END=1539511 GT:DP:GQ:MIN_DP:PL 0/0:55:34:49:0,34,1126 +chrX 1539512 . C T, 831.64 . AS_QUALapprox=|839|0;AS_VarDP=36|35|0;BaseQRankSum=-0.436;DP=73;MQRankSum=0.000;QUALapprox=839;RAW_GT_COUNT=0,1,0;RAW_MQandDP=262800,73;ReadPosRankSum=0.265;VarDP=71 GT:AD:DP:GQ:PL:SB 0/1:36,35,0:71:99:839,0,879,946,983,1930:17,19,16,19 +chrX 1539513 . G . . END=1540817 GT:DP:GQ:MIN_DP:PL 0/0:41:31:30:0,31,873 +chrX 1540818 . T . . END=1540818 GT:DP:GQ:MIN_DP:PL 0/0:31:19:31:0,19,869 +chrX 1540819 . CA C, 50.60 . AS_QUALapprox=|58|0;AS_VarDP=11|7|0;BaseQRankSum=0.210;DP=43;MQRankSum=-0.249;QUALapprox=58;RAW_GT_COUNT=0,1,0;RAW_MQandDP=143904,43;ReadPosRankSum=0.389;VarDP=18 GT:AD:DP:GQ:PL:SB 0/1:11,7,0:18:58:58,0,124,90,144,234:1,10,6,1 +chrX 1540821 . A . . END=1540859 GT:DP:GQ:MIN_DP:PL 0/0:48:75:48:0,75,1293 +chrX 1540860 . T . . END=1540860 GT:DP:GQ:MIN_DP:PL 0/0:48:2:48:0,2,1223 +chrX 1540861 . C . . END=1542251 GT:DP:GQ:MIN_DP:PL 0/0:58:54:58:0,54,1250 +chrX 1542252 . C T, 588.64 . AS_QUALapprox=|596|0;AS_VarDP=32|23|0;BaseQRankSum=1.730;DP=60;MQRankSum=-1.143;QUALapprox=596;RAW_GT_COUNT=0,1,0;RAW_MQandDP=210570,60;ReadPosRankSum=2.032;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:32,23,0:55:99:596,0,781,690,850,1540:17,15,14,9 +chrX 1542253 . G . . END=1544962 GT:DP:GQ:MIN_DP:PL 0/0:58:47:54:0,47,1050 +chrX 1544963 . A G, 82.64 . AS_QUALapprox=|90|0;AS_VarDP=23|5|0;BaseQRankSum=-1.597;DP=28;MQRankSum=-1.074;QUALapprox=90;RAW_GT_COUNT=0,1,0;RAW_MQandDP=99450,28;ReadPosRankSum=0.360;VarDP=28 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,5,0:28:90:0|1:1544963_A_G:90,0,829,158,844,1002:1544963:17,6,4,1 +chrX 1544964 . A . . END=1544964 GT:DP:GQ:MIN_DP:PL 0/0:27:72:27:0,72,1080 +chrX 1544965 . A C, 82.64 . AS_QUALapprox=|90|0;AS_VarDP=23|5|0;BaseQRankSum=-1.691;DP=28;MQRankSum=-1.074;QUALapprox=90;RAW_GT_COUNT=0,1,0;RAW_MQandDP=99450,28;ReadPosRankSum=0.300;VarDP=28 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,5,0:28:90:0|1:1544963_A_G:90,0,829,158,844,1002:1544963:17,6,4,1 +chrX 1544966 . A . . END=1544979 GT:DP:GQ:MIN_DP:PL 0/0:27:54:27:0,54,810 +chrX 1544980 . T . . END=1544980 GT:DP:GQ:MIN_DP:PL 0/0:26:19:26:0,19,735 +chrX 1544981 . C . . END=1544982 GT:DP:GQ:MIN_DP:PL 0/0:27:49:27:0,49,745 +chrX 1544983 . C CA,CAA, 11.51 . AS_QUALapprox=|13|19|0;AS_VarDP=9|1|1|0;BaseQRankSum=-1.691;DP=40;MQRankSum=0.000;QUALapprox=19;RAW_GT_COUNT=0,1,0;RAW_MQandDP=140650,40;ReadPosRankSum=1.335;VarDP=11 GT:AD:DP:GQ:PL:SB 0/2:9,1,1,0:11:6:19,6,144,0,153,230,34,168,208,222:8,1,0,2 +chrX 1544984 . A . . END=1545200 GT:DP:GQ:MIN_DP:PL 0/0:54:33:49:0,33,1215 +chrX 1545201 . C . . END=1545201 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,986 +chrX 1545202 . A . . END=1546120 GT:DP:GQ:MIN_DP:PL 0/0:60:42:60:0,42,884 +chrX 1546121 . T . . END=1546121 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,798 +chrX 1546122 . G . . END=1546176 GT:DP:GQ:MIN_DP:PL 0/0:35:27:32:0,27,832 +chrX 1546177 . A . . END=1546177 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,605 +chrX 1546178 . T . . END=1546261 GT:DP:GQ:MIN_DP:PL 0/0:58:80:58:0,80,1036 +chrX 1546262 . T . . END=1546262 GT:DP:GQ:MIN_DP:PL 0/0:62:0:62:0,0,1170 +chrX 1546263 . A . . END=1546277 GT:DP:GQ:MIN_DP:PL 0/0:64:39:59:0,39,1473 +chrX 1546278 . C . . END=1546278 GT:DP:GQ:MIN_DP:PL 0/0:61:0:61:0,0,1415 +chrX 1546279 . T . . END=1546288 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 1546289 . A . . END=1546289 GT:DP:GQ:MIN_DP:PL 0/0:64:0:64:0,0,1310 +chrX 1546290 . T . . END=1546389 GT:DP:GQ:MIN_DP:PL 0/0:49:62:49:0,62,1025 +chrX 1546390 . T . . END=1546391 GT:DP:GQ:MIN_DP:PL 0/0:45:3:45:0,3,1079 +chrX 1546392 . T . . END=1546496 GT:DP:GQ:MIN_DP:PL 0/0:45:29:31:0,29,789 +chrX 1546497 . T . . END=1546497 GT:DP:GQ:MIN_DP:PL 0/0:47:18:47:0,18,1236 +chrX 1546498 . T . . END=1548215 GT:DP:GQ:MIN_DP:PL 0/0:63:43:63:0,43,1285 +chrX 1548216 . T . . END=1548216 GT:DP:GQ:MIN_DP:PL 0/0:59:14:59:0,14,1474 +chrX 1548217 . G . . END=1548230 GT:DP:GQ:MIN_DP:PL 0/0:63:72:63:0,72,1583 +chrX 1548231 . T . . END=1548231 GT:DP:GQ:MIN_DP:PL 0/0:62:17:62:0,17,1495 +chrX 1548232 . A . . END=1548242 GT:DP:GQ:MIN_DP:PL 0/0:64:98:64:0,98,1797 +chrX 1548243 . G . . END=1548243 GT:DP:GQ:MIN_DP:PL 0/0:60:0:60:0,0,1461 +chrX 1548244 . A . . END=1548711 GT:DP:GQ:MIN_DP:PL 0/0:66:29:62:0,29,1333 +chrX 1548712 . A . . END=1548712 GT:DP:GQ:MIN_DP:PL 0/0:51:10:51:0,10,1355 +chrX 1548713 . C . . END=1550007 GT:DP:GQ:MIN_DP:PL 0/0:49:28:48:0,28,982 +chrX 1550008 . C A, 54.64 . AS_QUALapprox=|62|0;AS_VarDP=36|8|0;BaseQRankSum=-2.587;DP=52;MQRankSum=0.000;QUALapprox=62;RAW_GT_COUNT=0,1,0;RAW_MQandDP=185281,52;ReadPosRankSum=3.258;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:36,8,0:44:62:62,0,1005,169,1029,1197:25,11,0,8 +chrX 1550009 . A . . END=1550389 GT:DP:GQ:MIN_DP:PL 0/0:64:93:64:0,93,1216 +chrX 1550390 . A G, 1900.06 . AS_QUALapprox=|1914|0;AS_VarDP=0|59|0;DP=61;QUALapprox=1914;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1914,177,0,1914,177,1914:0,0,30,29 +chrX 1550391 . G . . END=1551286 GT:DP:GQ:MIN_DP:PL 0/0:54:22:45:0,22,1261 +chrX 1551287 . TGGG T, 13.59 . AS_QUALapprox=|21|0;AS_VarDP=46|4|0;BaseQRankSum=-2.612;DP=50;MQRankSum=0.000;QUALapprox=21;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=1.480;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:46,4,0:50:21:0|1:1551275_AGAGACGAG_A:21,0,1919,160,1932,2091:1551275:24,22,0,4 +chrX 1551291 . T TTTAATGATAC, 13.59 . AS_QUALapprox=|21|0;AS_VarDP=46|4|0;BaseQRankSum=-2.427;DP=50;MQRankSum=0.000;QUALapprox=21;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=1.335;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:46,4,0:50:21:0|1:1551275_AGAGACGAG_A:21,0,1919,160,1932,2091:1551275:24,22,0,4 +chrX 1551292 . G . . END=1551295 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,120,1800 +chrX 1551296 . A AC, 44.60 . AS_QUALapprox=|52|0;AS_VarDP=46|5|0;BaseQRankSum=-2.164;DP=56;MQRankSum=0.396;QUALapprox=52;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201481,56;ReadPosRankSum=-1.084;VarDP=51 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:46,5,0:51:52:0|1:1551275_AGAGACGAG_A:52,0,1909,190,1924,2114:1551275:25,21,0,5 +chrX 1551297 . C . . END=1551883 GT:DP:GQ:MIN_DP:PL 0/0:55:27:55:0,27,1035 +chrX 1551884 . T . . END=1551884 GT:DP:GQ:MIN_DP:PL 0/0:50:0:50:0,0,1221 +chrX 1551885 . A . . END=1551970 GT:DP:GQ:MIN_DP:PL 0/0:54:50:54:0,50,1039 +chrX 1551971 . T A, 124.64 . AS_QUALapprox=|132|0;AS_VarDP=27|10|0;BaseQRankSum=-1.863;DP=43;MQRankSum=0.000;QUALapprox=132;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154800,43;ReadPosRankSum=0.583;VarDP=37 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,10,0:37:99:0|1:1551971_T_A:132,0,905,213,935,1147:1551971:14,13,6,4 +chrX 1551972 . G . . END=1551988 GT:DP:GQ:MIN_DP:PL 0/0:39:90:39:0,90,1169 +chrX 1551989 . AAGAG A, 775.60 . AS_QUALapprox=|783|0;AS_VarDP=16|21|0;BaseQRankSum=0.938;DP=41;MQRankSum=0.000;QUALapprox=783;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147600,41;ReadPosRankSum=0.161;VarDP=37 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:16,21,0:37:99:0|1:1551971_T_A:783,0,567,831,630,1461:1551971:10,6,11,10 +chrX 1551994 . A . . END=1552046 GT:DP:GQ:MIN_DP:PL 0/0:43:83:43:0,83,1090 +chrX 1552047 . T . . END=1552047 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,894 +chrX 1552048 . G . . END=1552076 GT:DP:GQ:MIN_DP:PL 0/0:51:57:51:0,57,1206 +chrX 1552077 . T . . END=1552077 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,960 +chrX 1552078 . A . . END=1552114 GT:DP:GQ:MIN_DP:PL 0/0:44:27:40:0,27,953 +chrX 1552115 . C . . END=1552115 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,877 +chrX 1552116 . A . . END=1552141 GT:DP:GQ:MIN_DP:PL 0/0:45:29:43:0,29,1065 +chrX 1552142 . G . . END=1552142 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,905 +chrX 1552143 . G . . END=1552147 GT:DP:GQ:MIN_DP:PL 0/0:38:29:38:0,29,971 +chrX 1552148 . G . . END=1552148 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,918 +chrX 1552149 . G . . END=1552150 GT:DP:GQ:MIN_DP:PL 0/0:41:64:41:0,64,1011 +chrX 1552151 . G . . END=1552151 GT:DP:GQ:MIN_DP:PL 0/0:37:16:37:0,16,886 +chrX 1552152 . A . . END=1552159 GT:DP:GQ:MIN_DP:PL 0/0:39:45:39:0,45,912 +chrX 1552160 . T . . END=1552160 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,420 +chrX 1552161 . G . . END=1552222 GT:DP:GQ:MIN_DP:PL 0/0:43:45:41:0,45,967 +chrX 1552223 . T . . END=1552223 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,1002 +chrX 1552224 . G . . END=1552301 GT:DP:GQ:MIN_DP:PL 0/0:41:48:41:0,48,943 +chrX 1552302 . T . . END=1552302 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,889 +chrX 1552303 . G . . END=1552348 GT:DP:GQ:MIN_DP:PL 0/0:47:62:47:0,62,1061 +chrX 1552349 . T . . END=1552349 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,854 +chrX 1552350 . A . . END=1552417 GT:DP:GQ:MIN_DP:PL 0/0:48:44:48:0,44,942 +chrX 1552418 . T . . END=1552418 GT:DP:GQ:MIN_DP:PL 0/0:47:17:47:0,17,1195 +chrX 1552419 . G . . END=1552424 GT:DP:GQ:MIN_DP:PL 0/0:48:80:48:0,80,1400 +chrX 1552425 . GGAAA G, 475.60 . AS_QUALapprox=|483|0;AS_VarDP=21|13|0;BaseQRankSum=-0.233;DP=39;MQRankSum=0.847;QUALapprox=483;RAW_GT_COUNT=0,1,0;RAW_MQandDP=137425,39;ReadPosRankSum=1.762;VarDP=34 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,13,0:34:99:0|1:1552425_GGAAA_G:483,0,811,546,851,1397:1552425:11,10,12,1 +chrX 1552430 . G . . END=1552479 GT:DP:GQ:MIN_DP:PL 0/0:37:66:35:0,66,1058 +chrX 1552480 . AAAGG A,GAAGG, 581.60 . AS_QUALapprox=|589|0|0;AS_VarDP=18|16|2|0;BaseQRankSum=0.188;DP=43;MQRankSum=-0.944;QUALapprox=589;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151825,43;ReadPosRankSum=0.412;VarDP=36 GT:AD:DP:GQ:PL:SB 0/1:18,16,2,0:36:99:589,0,823,641,560,1241,665,769,1253,1421:14,4,12,6 +chrX 1552485 . A . . END=1553083 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,99,1201 +chrX 1553084 . T C, 857.64 . AS_QUALapprox=|865|0;AS_VarDP=34|33|0;BaseQRankSum=-2.526;DP=69;MQRankSum=0.000;QUALapprox=865;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=0.583;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:34,33,0:67:99:865,0,969,967,1068,2036:16,18,11,22 +chrX 1553085 . G . . END=1553192 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 1553193 . C G, 1068.64 . AS_QUALapprox=|1076|0;AS_VarDP=26|39|0;BaseQRankSum=-0.928;DP=66;MQRankSum=0.000;QUALapprox=1076;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=0.784;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:26,39,0:65:99:1076,0,678,1154,795,1949:14,12,25,14 +chrX 1553194 . A . . END=1553204 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1553205 . G A, 933.64 . AS_QUALapprox=|941|0;AS_VarDP=26|35|0;BaseQRankSum=-0.862;DP=64;MQRankSum=0.000;QUALapprox=941;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=0.525;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:26,35,0:61:99:941,0,666,1019,771,1789:16,10,20,15 +chrX 1553206 . A . . END=1553390 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 1553391 . C CTTTTT, 761.60 . AS_QUALapprox=|769|0;AS_VarDP=18|22|0;BaseQRankSum=-0.937;DP=58;MQRankSum=-0.854;QUALapprox=769;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208225,58;ReadPosRankSum=0.381;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:18,22,0:40:99:769,0,615,824,680,1504:11,7,8,14 +chrX 1553392 . T . . END=1553405 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,114,1710 +chrX 1553406 . G . . END=1553410 GT:DP:GQ:MIN_DP:PL 0/0:53:0:53:0,0,1103 +chrX 1553411 . A . . END=1553543 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,100,1343 +chrX 1553544 . T C, 796.64 . AS_QUALapprox=|804|0;AS_VarDP=26|21|0;BaseQRankSum=-0.209;DP=48;MQRankSum=-5.109;QUALapprox=804;RAW_GT_COUNT=0,1,0;RAW_MQandDP=142538,48;ReadPosRankSum=-1.420;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,21,0:47:99:0|1:1553544_T_C:804,0,1028,882,1092,1974:1553544:9,17,12,9 +chrX 1553545 . C G, 877.64 . AS_QUALapprox=|885|0;AS_VarDP=27|23|0;BaseQRankSum=-0.436;DP=51;MQRankSum=-5.363;QUALapprox=885;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151102,51;ReadPosRankSum=-1.328;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,23,0:50:99:0|1:1553544_T_C:885,0,1064,966,1134,2100:1553544:10,17,14,9 +chrX 1553546 . C . . END=1553547 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,111,1665 +chrX 1553548 . C T, 918.64 . AS_QUALapprox=|926|0;AS_VarDP=27|24|0;BaseQRankSum=2.048;DP=51;MQRankSum=-5.455;QUALapprox=926;RAW_GT_COUNT=0,1,0;RAW_MQandDP=149102,51;ReadPosRankSum=-1.113;VarDP=51 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,24,0:51:99:0|1:1553544_T_C:926,0,1061,1008,1134,2141:1553544:10,17,15,9 +chrX 1553549 . G . . END=1553551 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,120,1800 +chrX 1553552 . TA T, 918.60 . AS_QUALapprox=|926|0;AS_VarDP=27|24|0;BaseQRankSum=0.152;DP=51;MQRankSum=-5.684;QUALapprox=926;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147102,51;ReadPosRankSum=-1.004;VarDP=51 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,24,0:51:99:0|1:1553544_T_C:926,0,1061,1008,1134,2141:1553544:10,17,14,10 +chrX 1553554 . A . . END=1553559 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,120,1320 +chrX 1553560 . TGTA T, 841.60 . AS_QUALapprox=|849|0;AS_VarDP=25|22|0;BaseQRankSum=0.339;DP=49;MQRankSum=-6.057;QUALapprox=849;RAW_GT_COUNT=0,1,0;RAW_MQandDP=138066,49;ReadPosRankSum=-0.490;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,22,0:47:99:0|1:1553544_T_C:849,0,983,924,1050,1974:1553544:10,15,13,9 +chrX 1553564 . T . . END=1553666 GT:DP:GQ:MIN_DP:PL 0/0:59:95:59:0,95,1432 +chrX 1553667 . G T, 751.64 . AS_QUALapprox=|759|0;AS_VarDP=33|28|0;BaseQRankSum=2.332;DP=61;MQRankSum=-3.090;QUALapprox=759;RAW_GT_COUNT=0,1,0;RAW_MQandDP=203202,61;ReadPosRankSum=-1.412;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:33,28,0:61:99:759,0,829,858,913,1771:16,17,11,17 +chrX 1553668 . A . . END=1553682 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1553683 . T C, 1012.64 . AS_QUALapprox=|1020|0;AS_VarDP=34|27|0;BaseQRankSum=-0.214;DP=61;MQRankSum=-2.037;QUALapprox=1020;RAW_GT_COUNT=0,1,0;RAW_MQandDP=211038,61;ReadPosRankSum=-0.494;VarDP=61 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:34,27,0:61:99:0|1:1553683_T_C:1020,0,1335,1122,1416,2538:1553683:16,18,13,14 +chrX 1553684 . G . . END=1553684 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 1553685 . C T, 1012.64 . AS_QUALapprox=|1020|0;AS_VarDP=34|27|0;BaseQRankSum=1.338;DP=62;MQRankSum=-2.037;QUALapprox=1020;RAW_GT_COUNT=0,1,0;RAW_MQandDP=214638,62;ReadPosRankSum=-0.472;VarDP=61 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:34,27,0:61:99:0|1:1553683_T_C:1020,0,1335,1122,1416,2538:1553683:16,18,13,14 +chrX 1553686 . G . . END=1553717 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1553718 . G C, 818.64 . AS_QUALapprox=|826|0;AS_VarDP=30|31|0;BaseQRankSum=1.456;DP=63;MQRankSum=1.049;QUALapprox=826;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226225,63;ReadPosRankSum=0.022;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:30,31,0:61:99:826,0,760,916,852,1769:12,18,18,13 +chrX 1553719 . A . . END=1554081 GT:DP:GQ:MIN_DP:PL 0/0:63:73:63:0,73,1424 +chrX 1554082 . CA C, 483.60 . AS_QUALapprox=|491|0;AS_VarDP=24|20|0;BaseQRankSum=1.425;DP=47;MQRankSum=0.000;QUALapprox=491;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=-0.519;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:24,20,0:44:99:491,0,611,563,672,1235:11,13,14,6 +chrX 1554084 . A . . END=1554389 GT:DP:GQ:MIN_DP:PL 0/0:60:77:60:0,77,1351 +chrX 1554390 . C T, 697.64 . AS_QUALapprox=|705|0;AS_VarDP=39|29|0;BaseQRankSum=1.879;DP=69;MQRankSum=0.000;QUALapprox=705;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=0.999;VarDP=68 GT:AD:DP:GQ:PL:SB 0/1:39,29,0:68:99:705,0,932,821,1019,1840:16,23,17,12 +chrX 1554391 . A . . END=1554443 GT:DP:GQ:MIN_DP:PL 0/0:59:57:59:0,57,855 +chrX 1554444 . C T, 678.64 . AS_QUALapprox=|686|0;AS_VarDP=25|26|0;BaseQRankSum=0.473;DP=52;MQRankSum=0.000;QUALapprox=686;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=0.566;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:25,26,0:51:99:686,0,624,760,701,1462:8,17,15,11 +chrX 1554445 . A . . END=1554643 GT:DP:GQ:MIN_DP:PL 0/0:50:92:50:0,92,1398 +chrX 1554644 . C G, 508.64 . AS_QUALapprox=|516|0;AS_VarDP=26|20|0;BaseQRankSum=0.555;DP=47;MQRankSum=0.000;QUALapprox=516;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=-0.610;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:26,20,0:46:99:516,0,692,594,752,1346:10,16,4,16 +chrX 1554645 . C . . END=1554948 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1469 +chrX 1554949 . G A, 680.64 . AS_QUALapprox=|688|0;AS_VarDP=22|27|0;BaseQRankSum=-3.152;DP=52;MQRankSum=0.000;QUALapprox=688;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=-1.830;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:22,27,0:49:99:688,0,618,754,699,1453:10,12,13,14 +chrX 1554950 . A . . END=1555540 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1555541 . C T, 1788.06 . AS_QUALapprox=|1802|0;AS_VarDP=0|53|0;DP=54;QUALapprox=1802;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1802,159,0,1802,159,1802:0,0,25,28 +chrX 1555542 . A . . END=1555850 GT:DP:GQ:MIN_DP:PL 0/0:52:93:52:0,93,1340 +chrX 1555851 . G A, 650.64 . AS_QUALapprox=|658|0;AS_VarDP=28|24|0;BaseQRankSum=1.039;DP=53;MQRankSum=-1.042;QUALapprox=658;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190009,53;ReadPosRankSum=0.413;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:28,24,0:52:99:658,0,752,742,824,1566:16,12,10,14 +chrX 1555852 . T . . END=1555922 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 1555923 . C T, 1037.64 . AS_QUALapprox=|1045|0;AS_VarDP=30|39|0;BaseQRankSum=-0.801;DP=71;MQRankSum=0.284;QUALapprox=1045;RAW_GT_COUNT=0,1,0;RAW_MQandDP=249009,71;ReadPosRankSum=1.780;VarDP=69 GT:AD:DP:GQ:PL:SB 0/1:30,39,0:69:99:1045,0,795,1135,911,2047:15,15,25,14 +chrX 1555924 . A . . END=1555930 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 1555931 . T A, 3136.06 . AS_QUALapprox=|3150|0;AS_VarDP=0|70|0;DP=70;QUALapprox=3150;RAW_GT_COUNT=0,0,1;RAW_MQandDP=245409,70;VarDP=70 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,70,0:70:99:0|1:1555931_T_A:3150,211,0,3150,211,3150:1555931:0,0,40,30 +chrX 1555932 . G . . END=1555939 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1555940 . G A, 3226.06 . AS_QUALapprox=|3240|0;AS_VarDP=0|72|0;DP=72;QUALapprox=3240;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252609,72;VarDP=72 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,72,0:72:99:0|1:1555931_T_A:3240,217,0,3240,217,3240:1555931:0,0,41,31 +chrX 1555941 . A . . END=1555944 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 1555945 . G A, 3216.06 . AS_QUALapprox=|3230|0;AS_VarDP=0|72|0;DP=72;QUALapprox=3230;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252609,72;VarDP=72 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,72,0:72:99:0|1:1555931_T_A:3230,217,0,3230,217,3230:1555931:0,0,42,30 +chrX 1555946 . G . . END=1556233 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,105,1606 +chrX 1556234 . G GA, 616.60 . AS_QUALapprox=|624|0;AS_VarDP=22|27|0;BaseQRankSum=0.822;DP=57;MQRankSum=0.000;QUALapprox=624;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=1.357;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:22,27,0:49:99:624,0,483,690,564,1254:8,14,16,11 +chrX 1556235 . A . . END=1556356 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1556357 . T A, 744.64 . AS_QUALapprox=|752|0;AS_VarDP=32|28|0;BaseQRankSum=0.848;DP=63;MQRankSum=0.000;QUALapprox=752;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=-1.556;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:32,28,0:60:99:752,0,832,847,917,1763:12,20,12,16 +chrX 1556358 . C . . END=1556656 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,100,1800 +chrX 1556657 . T C, 728.64 . AS_QUALapprox=|736|0;AS_VarDP=29|27|0;BaseQRankSum=0.381;DP=62;MQRankSum=0.000;QUALapprox=736;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=0.459;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:29,27,0:56:99:736,0,797,823,877,1700:14,15,12,15 +chrX 1556658 . A . . END=1556794 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,106,1718 +chrX 1556795 . G C, 763.64 . AS_QUALapprox=|771|0;AS_VarDP=26|28|0;BaseQRankSum=0.886;DP=57;MQRankSum=0.000;QUALapprox=771;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-0.347;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:26,28,0:54:99:771,0,667,849,751,1600:8,18,15,13 +chrX 1556796 . T . . END=1556834 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1556835 . A ATT, 338.60 . AS_QUALapprox=|346|0;AS_VarDP=21|15|0;BaseQRankSum=-1.695;DP=51;MQRankSum=0.901;QUALapprox=346;RAW_GT_COUNT=0,1,0;RAW_MQandDP=179050,51;ReadPosRankSum=1.091;VarDP=36 GT:AD:DP:GQ:PL:SB 0/1:21,15,0:36:99:346,0,610,410,655,1065:10,11,8,7 +chrX 1556836 . T . . END=1556851 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,111,1665 +chrX 1556852 . G . . END=1556852 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,1177 +chrX 1556853 . A . . END=1556979 GT:DP:GQ:MIN_DP:PL 0/0:52:52:52:0,52,1208 +chrX 1556980 . T C, 743.64 . AS_QUALapprox=|751|0;AS_VarDP=25|29|0;BaseQRankSum=-1.840;DP=60;MQRankSum=0.000;QUALapprox=751;RAW_GT_COUNT=0,1,0;RAW_MQandDP=214100,60;ReadPosRankSum=1.693;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:25,29,0:54:99:751,0,687,826,774,1600:13,12,15,14 +chrX 1556981 . C . . END=1557385 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,113,1379 +chrX 1557386 . T C, 450.64 . AS_QUALapprox=|458|0;AS_VarDP=44|20|0;BaseQRankSum=0.023;DP=64;MQRankSum=0.000;QUALapprox=458;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=-1.116;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:44,20,0:64:99:458,0,1265,590,1325,1915:27,17,14,6 +chrX 1557387 . T . . END=1557650 GT:DP:GQ:MIN_DP:PL 0/0:67:89:67:0,89,1800 +chrX 1557651 . TATCC T, 972.60 . AS_QUALapprox=|980|0;AS_VarDP=25|26|0;BaseQRankSum=0.686;DP=73;MQRankSum=0.000;QUALapprox=980;RAW_GT_COUNT=0,1,0;RAW_MQandDP=262800,73;ReadPosRankSum=-0.848;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:25,26,0:51:99:980,0,949,1055,1028,2083:13,12,14,12 +chrX 1557656 . A . . END=1557723 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 1557724 . T TTATC, 1134.60 . AS_QUALapprox=|1142|0;AS_VarDP=25|30|0;BaseQRankSum=-2.028;DP=67;MQRankSum=0.000;QUALapprox=1142;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=-0.566;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:25,30,0:55:99:1142,0,918,1217,1009,2226:16,9,15,15 +chrX 1557725 . T . . END=1557816 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 1557817 . TTATCTATCTATG T, 987.60 . AS_QUALapprox=|995|0;AS_VarDP=36|27|0;BaseQRankSum=0.092;DP=80;MQRankSum=0.000;QUALapprox=995;RAW_GT_COUNT=0,1,0;RAW_MQandDP=288000,80;ReadPosRankSum=0.726;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:36,27,0:63:99:995,0,1408,1104,1490,2594:24,12,15,12 +chrX 1557830 . T . . END=1557934 GT:DP:GQ:MIN_DP:PL 0/0:87:91:87:0,91,1800 +chrX 1557935 . GTATC G, 1432.60 . AS_QUALapprox=|1440|0;AS_VarDP=32|37|0;BaseQRankSum=1.796;DP=82;MQRankSum=0.000;QUALapprox=1440;RAW_GT_COUNT=0,1,0;RAW_MQandDP=295200,82;ReadPosRankSum=1.047;VarDP=69 GT:AD:DP:GQ:PL:SB 0/1:32,37,0:69:99:1440,0,1227,1536,1339,2875:19,13,16,21 +chrX 1557940 . T . . END=1558158 GT:DP:GQ:MIN_DP:PL 0/0:77:99:77:0,120,1800 +chrX 1558159 . TCTAC T, 1337.60 . AS_QUALapprox=|1345|0;AS_VarDP=28|35|0;BaseQRankSum=-1.252;DP=74;MQRankSum=0.000;QUALapprox=1345;RAW_GT_COUNT=0,1,0;RAW_MQandDP=266400,74;ReadPosRankSum=1.287;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:28,35,0:63:99:1345,0,1014,1429,1120,2549:10,18,14,21 +chrX 1558164 . C . . END=1558212 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1558213 . A AATCTATCT, 2010.03 . AS_QUALapprox=|2024|0;AS_VarDP=0|47|0;DP=58;QUALapprox=2024;RAW_GT_COUNT=0,0,1;RAW_MQandDP=207136,58;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:2024,140,0,2024,141,2025:0,0,20,27 +chrX 1558214 . A . . END=1558243 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1558244 . G . . END=1558244 GT:DP:GQ:MIN_DP:PL 0/0:55:0:55:0,0,1007 +chrX 1558245 . T . . END=1558246 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1558247 . G . . END=1558247 GT:DP:GQ:MIN_DP:PL 0/0:55:0:55:0,0,1126 +chrX 1558248 . C . . END=1558250 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 1558251 . A . . END=1558251 GT:DP:GQ:MIN_DP:PL 0/0:55:0:55:0,0,1405 +chrX 1558252 . T . . END=1558612 GT:DP:GQ:MIN_DP:PL 0/0:60:30:53:0,30,1465 +chrX 1558613 . GTATC G, 842.60 . AS_QUALapprox=|850|0;AS_VarDP=29|24|0;BaseQRankSum=-0.435;DP=59;MQRankSum=-0.135;QUALapprox=850;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208730,59;ReadPosRankSum=1.634;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:29,24,0:53:99:850,0,1090,937,1162,2099:5,24,9,15 +chrX 1558618 . T . . END=1558653 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1558654 . A AATCTATCT,AATCTATCTATCTATCTATCT, 1814.02 . AS_QUALapprox=|1102|1089|0;AS_VarDP=0|19|19|0;DP=56;QUALapprox=1831;RAW_GT_COUNT=0,0,1;RAW_MQandDP=197930,56;VarDP=38 GT:AD:DP:GQ:PL:SB 1/2:0,19,19,0:38:99:1831,806,729,816,0,742,1728,806,817,1709:0,0,8,30 +chrX 1558655 . A . . END=1558705 GT:DP:GQ:MIN_DP:PL 0/0:43:80:43:0,80,1211 +chrX 1558706 . CATCTATCTATCT C,CATCT, 941.02 . AS_QUALapprox=|456|538|0;AS_VarDP=0|11|12|0;DP=45;QUALapprox=958;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162000,45;VarDP=23 GT:AD:DP:GQ:PL:SB 1/2:0,11,12,0:23:99:958,502,542,458,0,420,965,542,463,998:0,0,12,11 +chrX 1558719 . A . . END=1559160 GT:DP:GQ:MIN_DP:PL 0/0:55:70:55:0,70,1127 +chrX 1559161 . C T, 511.64 . AS_QUALapprox=|519|0;AS_VarDP=25|19|0;BaseQRankSum=2.418;DP=45;MQRankSum=0.000;QUALapprox=519;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=1.434;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:25,19,0:44:99:519,0,617,593,674,1267:11,14,11,8 +chrX 1559162 . G . . END=1559452 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,102,1340 +chrX 1559453 . C CA, 907.60 . AS_QUALapprox=|915|0;AS_VarDP=23|27|0;BaseQRankSum=-1.500;DP=52;MQRankSum=0.000;QUALapprox=915;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=1.597;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:23,27,0:50:99:915,0,779,985,861,1845:13,10,15,12 +chrX 1559454 . C . . END=1559687 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,101,1549 +chrX 1559688 . G A, 674.64 . AS_QUALapprox=|682|0;AS_VarDP=33|27|0;BaseQRankSum=-1.827;DP=61;MQRankSum=-1.072;QUALapprox=682;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219481,61;ReadPosRankSum=0.498;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:33,27,0:60:99:682,0,937,781,1018,1799:19,14,14,13 +chrX 1559689 . T . . END=1559745 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 1559746 . A G, 570.64 . AS_QUALapprox=|578|0;AS_VarDP=32|25|0;BaseQRankSum=-1.846;DP=58;MQRankSum=-1.096;QUALapprox=578;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208681,58;ReadPosRankSum=-0.909;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:32,25,0:57:99:578,0,892,674,966,1640:13,19,13,12 +chrX 1559747 . G . . END=1559782 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 1559783 . T C, 2153.06 . AS_QUALapprox=|2167|0;AS_VarDP=0|68|0;DP=69;QUALapprox=2167;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248281,69;VarDP=68 GT:AD:DP:GQ:PL:SB 1/1:0,68,0:68:99:2167,204,0,2167,204,2167:0,0,35,33 +chrX 1559784 . G . . END=1559850 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1559851 . G . . END=1559851 GT:DP:GQ:MIN_DP:PL 0/0:66:0:66:0,0,1787 +chrX 1559852 . C . . END=1560628 GT:DP:GQ:MIN_DP:PL 0/0:35:36:35:0,36,972 +chrX 1560629 . T . . END=1560629 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,800 +chrX 1560630 . C CA, 192.60 . AS_QUALapprox=|200|0;AS_VarDP=6|15|0;BaseQRankSum=0.000;DP=44;MQRankSum=-0.527;QUALapprox=200;RAW_GT_COUNT=0,1,0;RAW_MQandDP=153104,44;ReadPosRankSum=-0.507;VarDP=21 GT:AD:DP:GQ:PL:SB 0/1:6,15,0:21:47:200,0,47,218,91,308:6,0,9,6 +chrX 1560631 . A . . END=1560954 GT:DP:GQ:MIN_DP:PL 0/0:41:65:41:0,65,999 +chrX 1560955 . A G, 509.64 . AS_QUALapprox=|517|0;AS_VarDP=22|19|0;BaseQRankSum=-0.076;DP=42;MQRankSum=0.000;QUALapprox=517;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151200,42;ReadPosRankSum=0.863;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:22,19,0:41:99:517,0,607,583,664,1247:13,9,10,9 +chrX 1560956 . T . . END=1561103 GT:DP:GQ:MIN_DP:PL 0/0:35:68:34:0,68,738 +chrX 1561104 . C T, 326.64 . AS_QUALapprox=|334|0;AS_VarDP=20|14|0;BaseQRankSum=0.831;DP=37;MQRankSum=0.000;QUALapprox=334;RAW_GT_COUNT=0,1,0;RAW_MQandDP=133200,37;ReadPosRankSum=0.140;VarDP=34 GT:AD:DP:GQ:PL:SB 0/1:20,14,0:34:99:334,0,492,394,534,928:7,13,7,7 +chrX 1561105 . T . . END=1561116 GT:DP:GQ:MIN_DP:PL 0/0:42:82:42:0,82,1084 +chrX 1561117 . A . . END=1561117 GT:DP:GQ:MIN_DP:PL 0/0:40:17:40:0,17,972 +chrX 1561118 . T . . END=1561262 GT:DP:GQ:MIN_DP:PL 0/0:46:48:46:0,48,720 +chrX 1561263 . T . . END=1561263 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,68 +chrX 1561264 . TC T, 672.60 . AS_QUALapprox=|680|0;AS_VarDP=15|18|0;BaseQRankSum=1.279;DP=36;MQRankSum=0.000;QUALapprox=680;RAW_GT_COUNT=0,1,0;RAW_MQandDP=129600,36;ReadPosRankSum=0.868;VarDP=33 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:15,18,0:33:99:0|1:1561264_TC_T:680,0,563,726,617,1343:1561264:3,12,7,11 +chrX 1561266 . C . . END=1561267 GT:DP:GQ:MIN_DP:PL 0/0:32:81:32:0,81,1215 +chrX 1561268 . TCTC T, 672.60 . AS_QUALapprox=|680|0;AS_VarDP=15|18|0;BaseQRankSum=0.251;DP=36;MQRankSum=0.000;QUALapprox=680;RAW_GT_COUNT=0,1,0;RAW_MQandDP=129600,36;ReadPosRankSum=0.418;VarDP=33 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:15,18,0:33:99:0|1:1561264_TC_T:680,0,563,725,617,1343:1561264:3,12,7,11 +chrX 1561272 . T . . END=1561288 GT:DP:GQ:MIN_DP:PL 0/0:30:60:30:0,60,847 +chrX 1561289 . TTC T, 657.60 . AS_QUALapprox=|665|0;AS_VarDP=13|18|0;BaseQRankSum=0.068;DP=36;MQRankSum=0.000;QUALapprox=665;RAW_GT_COUNT=0,1,0;RAW_MQandDP=129600,36;ReadPosRankSum=-1.057;VarDP=31 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:13,18,0:31:99:0|1:1561264_TC_T:665,0,463,704,518,1222:1561264:3,10,8,10 +chrX 1561292 . T . . END=1561388 GT:DP:GQ:MIN_DP:PL 0/0:42:28:40:0,28,865 +chrX 1561389 . G . . END=1561389 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,977 +chrX 1561390 . T . . END=1561396 GT:DP:GQ:MIN_DP:PL 0/0:46:28:44:0,28,1271 +chrX 1561397 . G . . END=1561397 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,1016 +chrX 1561398 . T . . END=1561399 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,120,1800 +chrX 1561400 . C . . END=1561400 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,961 +chrX 1561401 . C . . END=1561403 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,120,1800 +chrX 1561404 . C . . END=1561404 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,1027 +chrX 1561405 . C . . END=1561410 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,120,1800 +chrX 1561411 . C . . END=1561411 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,1042 +chrX 1561412 . T . . END=1561414 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,105,1575 +chrX 1561415 . C . . END=1561415 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,911 +chrX 1561416 . T . . END=1561417 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,102,1530 +chrX 1561418 . C CTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT, 761.60 . AS_QUALapprox=|769|0;AS_VarDP=20|20|0;BaseQRankSum=0.665;DP=51;MQRankSum=-1.747;QUALapprox=769;RAW_GT_COUNT=0,1,0;RAW_MQandDP=178858,51;ReadPosRankSum=-0.543;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:20,20,0:40:99:769,0,735,832,795,1628:9,11,10,10 +chrX 1561419 . T . . END=1561439 GT:DP:GQ:MIN_DP:PL 0/0:48:63:48:0,63,945 +chrX 1561440 . C . . END=1561440 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,770 +chrX 1561441 . C . . END=1561443 GT:DP:GQ:MIN_DP:PL 0/0:47:69:47:0,69,1035 +chrX 1561444 . C . . END=1561444 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,750 +chrX 1561445 . C . . END=1561447 GT:DP:GQ:MIN_DP:PL 0/0:47:75:47:0,75,1125 +chrX 1561448 . C . . END=1561448 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,823 +chrX 1561449 . C . . END=1561451 GT:DP:GQ:MIN_DP:PL 0/0:46:81:46:0,81,1215 +chrX 1561452 . C . . END=1561452 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,849 +chrX 1561453 . C . . END=1561455 GT:DP:GQ:MIN_DP:PL 0/0:48:90:48:0,90,1350 +chrX 1561456 . C . . END=1561456 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,1023 +chrX 1561457 . C . . END=1561459 GT:DP:GQ:MIN_DP:PL 0/0:46:96:46:0,96,1440 +chrX 1561460 . C . . END=1561460 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,1053 +chrX 1561461 . C . . END=1561463 GT:DP:GQ:MIN_DP:PL 0/0:44:96:44:0,96,1440 +chrX 1561464 . C . . END=1561464 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,978 +chrX 1561465 . C . . END=1561467 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,102,1530 +chrX 1561468 . C . . END=1561468 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,1117 +chrX 1561469 . C . . END=1561475 GT:DP:GQ:MIN_DP:PL 0/0:44:23:44:0,23,1252 +chrX 1561476 . G . . END=1561479 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,978 +chrX 1561480 . G . . END=1561480 GT:DP:GQ:MIN_DP:PL 0/0:37:42:37:0,42,1087 +chrX 1561481 . G . . END=1561481 GT:DP:GQ:MIN_DP:PL 0/0:38:5:38:0,5,1002 +chrX 1561482 . G . . END=1561541 GT:DP:GQ:MIN_DP:PL 0/0:39:30:38:0,30,1061 +chrX 1561542 . C T, 487.64 . AS_QUALapprox=|495|0;AS_VarDP=26|19|0;BaseQRankSum=-1.281;DP=50;MQRankSum=0.000;QUALapprox=495;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=0.287;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:26,19,0:45:99:495,0,744,572,801,1373:17,9,10,9 +chrX 1561543 . T . . END=1561656 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,110,1539 +chrX 1561657 . G A, 733.64 . AS_QUALapprox=|741|0;AS_VarDP=30|29|0;BaseQRankSum=0.363;DP=61;MQRankSum=0.000;QUALapprox=741;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-0.546;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:30,29,0:59:99:741,0,736,831,823,1654:17,13,17,12 +chrX 1561658 . A . . END=1561687 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 1561688 . T C, 722.64 . AS_QUALapprox=|730|0;AS_VarDP=30|28|0;BaseQRankSum=-0.214;DP=60;MQRankSum=0.000;QUALapprox=730;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=-0.016;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:30,28,0:58:99:730,0,764,819,848,1667:16,14,18,10 +chrX 1561689 . A . . END=1561746 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 1561747 . T TA, 465.60 . AS_QUALapprox=|473|0;AS_VarDP=24|25|0;BaseQRankSum=-1.234;DP=62;MQRankSum=0.000;QUALapprox=473;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=1.621;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:24,25,0:49:99:473,0,474,545,549,1094:13,11,11,14 +chrX 1561748 . A . . END=1561977 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,119,1800 +chrX 1561978 . G A, 831.64 . AS_QUALapprox=|839|0;AS_VarDP=32|31|0;BaseQRankSum=1.582;DP=65;MQRankSum=0.000;QUALapprox=839;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=-0.454;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:32,31,0:63:99:839,0,764,934,857,1791:14,18,12,19 +chrX 1561979 . C . . END=1562123 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 1562124 . G T, 2541.06 . AS_QUALapprox=|2555|0;AS_VarDP=0|78|0;DP=79;QUALapprox=2555;RAW_GT_COUNT=0,0,1;RAW_MQandDP=284400,79;VarDP=78 GT:AD:DP:GQ:PL:SB 1/1:0,78,0:78:99:2555,234,0,2555,234,2555:0,0,46,32 +chrX 1562125 . T . . END=1562168 GT:DP:GQ:MIN_DP:PL 0/0:74:99:74:0,120,1800 +chrX 1562169 . T C, 769.64 . AS_QUALapprox=|777|0;AS_VarDP=48|32|0;BaseQRankSum=-0.440;DP=84;MQRankSum=0.000;QUALapprox=777;RAW_GT_COUNT=0,1,0;RAW_MQandDP=302400,84;ReadPosRankSum=-1.297;VarDP=80 GT:AD:DP:GQ:PL:SB 0/1:48,32,0:80:99:777,0,1314,921,1409,2330:27,21,17,15 +chrX 1562170 . G . . END=1562197 GT:DP:GQ:MIN_DP:PL 0/0:83:99:83:0,120,1800 +chrX 1562198 . A G, 3605.06 . AS_QUALapprox=|3619|0;AS_VarDP=0|83|0;DP=87;QUALapprox=3619;RAW_GT_COUNT=0,0,1;RAW_MQandDP=313200,87;VarDP=83 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,83,0:83:99:0|1:1562198_A_G:3619,250,0,3619,250,3619:1562198:0,0,46,37 +chrX 1562199 . G . . END=1562208 GT:DP:GQ:MIN_DP:PL 0/0:80:99:80:0,120,1800 +chrX 1562209 . T C, 3511.06 . AS_QUALapprox=|3525|0;AS_VarDP=0|80|0;DP=83;QUALapprox=3525;RAW_GT_COUNT=0,0,1;RAW_MQandDP=298800,83;VarDP=80 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,80,0:80:99:0|1:1562198_A_G:3525,241,0,3525,241,3525:1562198:0,0,43,37 +chrX 1562210 . C . . END=1562269 GT:DP:GQ:MIN_DP:PL 0/0:74:99:74:0,120,1800 +chrX 1562270 . C T, 2543.06 . AS_QUALapprox=|2557|0;AS_VarDP=0|75|0;DP=79;QUALapprox=2557;RAW_GT_COUNT=0,0,1;RAW_MQandDP=284400,79;VarDP=75 GT:AD:DP:GQ:PL:SB 1/1:0,75,0:75:99:2557,226,0,2557,226,2557:0,0,38,37 +chrX 1562271 . G . . END=1562446 GT:DP:GQ:MIN_DP:PL 0/0:74:99:74:0,113,1800 +chrX 1562447 . T C, 1148.64 . AS_QUALapprox=|1156|0;AS_VarDP=34|45|0;BaseQRankSum=-2.244;DP=81;MQRankSum=0.951;QUALapprox=1156;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237847,81;ReadPosRankSum=-0.243;VarDP=79 GT:AD:DP:GQ:PL:SB 0/1:34,45,0:79:99:1156,0,894,1259,1030,2288:13,21,18,27 +chrX 1562448 . G . . END=1562459 GT:DP:GQ:MIN_DP:PL 0/0:78:99:78:0,120,1800 +chrX 1562460 . A G, 830.64 . AS_QUALapprox=|838|0;AS_VarDP=41|35|0;BaseQRankSum=-0.183;DP=79;MQRankSum=-1.296;QUALapprox=838;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230647,79;ReadPosRankSum=0.568;VarDP=76 GT:AD:DP:GQ:PL:SB 0/1:41,35,0:76:99:838,0,1057,962,1162,2123:14,27,12,23 +chrX 1562461 . C . . END=1562758 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 1562759 . C G, 984.64 . AS_QUALapprox=|992|0;AS_VarDP=33|26|0;BaseQRankSum=-0.584;DP=61;MQRankSum=0.000;QUALapprox=992;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-0.657;VarDP=59 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:33,26,0:59:99:0|1:1562759_C_G:992,0,1257,1092,1335,2427:1562759:17,16,15,11 +chrX 1562760 . C . . END=1562760 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 1562761 . C T, 984.64 . AS_QUALapprox=|992|0;AS_VarDP=33|26|0;BaseQRankSum=-0.877;DP=61;MQRankSum=0.000;QUALapprox=992;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-0.673;VarDP=59 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:33,26,0:59:99:0|1:1562759_C_G:992,0,1257,1092,1335,2427:1562759:17,16,15,11 +chrX 1562762 . G . . END=1562846 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 1562847 . T C, 994.64 . AS_QUALapprox=|1002|0;AS_VarDP=27|27|0;BaseQRankSum=1.060;DP=56;MQRankSum=0.000;QUALapprox=1002;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-0.123;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,27,0:54:99:0|1:1562847_T_C:1002,0,1020,1083,1101,2184:1562847:13,14,15,12 +chrX 1562848 . A . . END=1562854 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 1562855 . C T, 986.64 . AS_QUALapprox=|994|0;AS_VarDP=26|27|0;BaseQRankSum=1.095;DP=55;MQRankSum=0.000;QUALapprox=994;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-0.819;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,27,0:53:99:0|1:1562847_T_C:994,0,979,1073,1061,2133:1562847:13,13,15,12 +chrX 1562856 . G . . END=1562926 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 1562927 . G A, 786.64 . AS_QUALapprox=|794|0;AS_VarDP=24|29|0;BaseQRankSum=2.210;DP=53;MQRankSum=-0.872;QUALapprox=794;RAW_GT_COUNT=0,1,0;RAW_MQandDP=189700,53;ReadPosRankSum=0.983;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:24,29,0:53:99:794,0,560,866,647,1513:10,14,19,10 +chrX 1562928 . G . . END=1562992 GT:DP:GQ:MIN_DP:PL 0/0:46:47:46:0,47,1144 +chrX 1562993 . C . . END=1562993 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,1254 +chrX 1562994 . A . . END=1563004 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 1563005 . A AG, 849.60 . AS_QUALapprox=|857|0;AS_VarDP=23|26|0;BaseQRankSum=-1.723;DP=53;MQRankSum=0.000;QUALapprox=857;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=1.763;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:23,26,0:49:99:857,0,612,926,691,1616:10,13,13,13 +chrX 1563006 . A . . END=1563075 GT:DP:GQ:MIN_DP:PL 0/0:46:81:46:0,81,1215 +chrX 1563076 . A G, 690.64 . AS_QUALapprox=|698|0;AS_VarDP=25|23|0;BaseQRankSum=1.262;DP=50;MQRankSum=0.000;QUALapprox=698;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=-2.135;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:25,23,0:48:99:698,0,882,773,951,1724:19,6,13,10 +chrX 1563077 . AAAAG A,AAAAGAAAGAAAG, 1518.02 . AS_QUALapprox=|779|836|0;AS_VarDP=0|23|19|0;DP=49;QUALapprox=1535;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=42 GT:AD:DP:GQ:PL:SB 1/2:0,23,19,0:42:99:1535,756,881,758,0,699,1546,865,775,1630:0,0,28,14 +chrX 1563082 . A . . END=1563185 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,102,1680 +chrX 1563186 . A . . END=1563186 GT:DP:GQ:MIN_DP:PL 0/0:65:17:65:0,17,1743 +chrX 1563187 . G GGA, 1303.60 . AS_QUALapprox=|1311|0;AS_VarDP=18|35|0;BaseQRankSum=0.113;DP=61;MQRankSum=0.000;QUALapprox=1311;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216900,61;ReadPosRankSum=-0.752;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:18,35,0:53:99:1311,0,615,1366,721,2087:12,6,19,16 +chrX 1563188 . G . . END=1563498 GT:DP:GQ:MIN_DP:PL 0/0:59:35:55:0,35,1379 +chrX 1563499 . CA C, 717.03 . AS_QUALapprox=|731|0;AS_VarDP=2|32|0;DP=58;MQRankSum=-0.269;QUALapprox=731;RAW_GT_COUNT=0,0,1;RAW_MQandDP=204705,58;VarDP=34 GT:AD:DP:GQ:PL:SB 1/1:2,32,0:34:56:731,56,0,737,95,777:0,2,20,12 +chrX 1563501 . A . . END=1563570 GT:DP:GQ:MIN_DP:PL 0/0:60:79:60:0,79,1737 +chrX 1563571 . T . . END=1563571 GT:DP:GQ:MIN_DP:PL 0/0:58:2:58:0,2,1350 +chrX 1563572 . A . . END=1563615 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,117,1527 +chrX 1563616 . T C, 1832.06 . AS_QUALapprox=|1846|0;AS_VarDP=0|58|0;DP=59;QUALapprox=1846;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=58 GT:AD:DP:GQ:PL:SB 1/1:0,58,0:58:99:1846,174,0,1846,174,1846:0,0,30,28 +chrX 1563617 . G . . END=1564014 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,112,1800 +chrX 1564015 . CTT C,CT,CTTT, 885.02 . AS_QUALapprox=|536|592|0|0;AS_VarDP=0|18|18|2|0;DP=55;QUALapprox=902;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=38 GT:AD:DP:GQ:PL:SB 1/2:0,18,18,2,0:38:99:902,366,429,395,0,310,946,371,358,1178,905,387,409,948,919:0,0,19,19 +chrX 1564018 . T . . END=1564528 GT:DP:GQ:MIN_DP:PL 0/0:57:32:52:0,32,1349 +chrX 1564529 . A C, 2833.06 . AS_QUALapprox=|2847|0;AS_VarDP=0|64|0;DP=64;QUALapprox=2847;RAW_GT_COUNT=0,0,1;RAW_MQandDP=228699,64;VarDP=64 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,64,0:64:99:0|1:1564529_A_C:2847,193,0,2847,193,2847:1564529:0,0,34,30 +chrX 1564530 . A . . END=1564533 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1564534 . C A, 2832.06 . AS_QUALapprox=|2846|0;AS_VarDP=0|64|0;DP=64;QUALapprox=2846;RAW_GT_COUNT=0,0,1;RAW_MQandDP=229490,64;VarDP=64 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,64,0:64:99:0|1:1564529_A_C:2846,193,0,2846,193,2846:1564529:0,0,34,30 +chrX 1564535 . C . . END=1564695 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 1564696 . G T, 1197.64 . AS_QUALapprox=|1205|0;AS_VarDP=20|43|0;BaseQRankSum=-1.226;DP=66;MQRankSum=0.000;QUALapprox=1205;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=1.182;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:20,43,0:63:99:1205,0,486,1265,615,1880:8,12,16,27 +chrX 1564697 . C . . END=1564717 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 1564718 . G C, 2054.06 . AS_QUALapprox=|2068|0;AS_VarDP=0|65|0;DP=65;QUALapprox=2068;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=65 GT:AD:DP:GQ:PL:SB 1/1:0,65,0:65:99:2068,194,0,2068,194,2068:0,0,26,39 +chrX 1564719 . A . . END=1565177 GT:DP:GQ:MIN_DP:PL 0/0:61:87:61:0,87,1197 +chrX 1565178 . T C, 1208.64 . AS_QUALapprox=|1216|0;AS_VarDP=32|47|0;BaseQRankSum=-2.720;DP=83;MQRankSum=0.000;QUALapprox=1216;RAW_GT_COUNT=0,1,0;RAW_MQandDP=298800,83;ReadPosRankSum=-1.384;VarDP=79 GT:AD:DP:GQ:PL:SB 0/1:32,47,0:79:99:1216,0,855,1312,995,2307:16,16,23,24 +chrX 1565179 . G . . END=1565480 GT:DP:GQ:MIN_DP:PL 0/0:73:99:73:0,120,1800 +chrX 1565481 . T C, 881.64 . AS_QUALapprox=|889|0;AS_VarDP=28|38|0;BaseQRankSum=-1.567;DP=68;MQRankSum=0.000;QUALapprox=889;RAW_GT_COUNT=0,1,0;RAW_MQandDP=243225,68;ReadPosRankSum=-1.129;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:28,38,0:66:99:889,0,692,973,804,1777:15,13,19,19 +chrX 1565482 . C . . END=1565594 GT:DP:GQ:MIN_DP:PL 0/0:61:93:61:0,93,1592 +chrX 1565595 . TG T, 826.60 . AS_QUALapprox=|834|0;AS_VarDP=24|27|0;BaseQRankSum=0.623;DP=52;MQRankSum=0.000;QUALapprox=834;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=0.434;VarDP=51 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,27,0:51:99:0|1:1565595_TG_T:834,0,888,906,969,1875:1565595:15,9,14,13 +chrX 1565597 . G . . END=1565602 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,118,1613 +chrX 1565603 . GT G, 451.60 . AS_QUALapprox=|459|0;AS_VarDP=29|22|0;BaseQRankSum=-0.811;DP=54;MQRankSum=0.000;QUALapprox=459;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=0.143;VarDP=51 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:29,22,0:51:99:1|0:1565595_TG_T:459,0,1058,546,1125,1670:1565595:15,14,12,10 +chrX 1565605 . T . . END=1565874 GT:DP:GQ:MIN_DP:PL 0/0:75:28:63:0,28,1800 +chrX 1565875 . C . . END=1565878 GT:DP:GQ:MIN_DP:PL 0/0:81:0:81:0,0,2169 +chrX 1565879 . T . . END=1565879 GT:DP:GQ:MIN_DP:PL 0/0:90:99:90:0,120,1800 +chrX 1565880 . G . . END=1565880 GT:DP:GQ:MIN_DP:PL 0/0:83:6:83:0,6,2218 +chrX 1565881 . T . . END=1565881 GT:DP:GQ:MIN_DP:PL 0/0:89:99:89:0,120,1800 +chrX 1565882 . G . . END=1565887 GT:DP:GQ:MIN_DP:PL 0/0:79:0:79:0,0,2011 +chrX 1565888 . C . . END=1565889 GT:DP:GQ:MIN_DP:PL 0/0:88:99:88:0,120,1800 +chrX 1565890 . G . . END=1565902 GT:DP:GQ:MIN_DP:PL 0/0:83:0:83:0,0,1965 +chrX 1565903 . T . . END=1565903 GT:DP:GQ:MIN_DP:PL 0/0:94:99:94:0,120,1800 +chrX 1565904 . G . . END=1565908 GT:DP:GQ:MIN_DP:PL 0/0:83:0:83:0,0,1932 +chrX 1565909 . T . . END=1565909 GT:DP:GQ:MIN_DP:PL 0/0:93:99:93:0,120,1800 +chrX 1565910 . T . . END=1565911 GT:DP:GQ:MIN_DP:PL 0/0:82:0:82:0,0,2020 +chrX 1565912 . T . . END=1565912 GT:DP:GQ:MIN_DP:PL 0/0:94:99:94:0,120,1800 +chrX 1565913 . A . . END=1565915 GT:DP:GQ:MIN_DP:PL 0/0:83:0:83:0,0,1900 +chrX 1565916 . A . . END=1565916 GT:DP:GQ:MIN_DP:PL 0/0:92:99:92:0,120,1800 +chrX 1565917 . A . . END=1565918 GT:DP:GQ:MIN_DP:PL 0/0:82:0:82:0,0,1880 +chrX 1565919 . A . . END=1565919 GT:DP:GQ:MIN_DP:PL 0/0:94:99:94:0,120,1800 +chrX 1565920 . C . . END=1565923 GT:DP:GQ:MIN_DP:PL 0/0:85:0:85:0,0,1830 +chrX 1565924 . T TTTTTTTTTTCCCCCAAAAGGGGACCTAGGCGTGGTGGTACAAAACAC, 1334.60 . AS_QUALapprox=|1342|0;AS_VarDP=42|35|0;BaseQRankSum=0.882;DP=80;MQRankSum=0.000;QUALapprox=1342;RAW_GT_COUNT=0,1,0;RAW_MQandDP=288000,80;ReadPosRankSum=-0.625;VarDP=77 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:42,35,0:77:99:0|1:1565924_T_TTTTTTTTTTCCCCCAAAAGGGGACCTAGGCGTGGTGGTACAAAACAC:1342,0,1630,1470,1735,3205:1565924:20,22,21,14 +chrX 1565925 . T C, 1154.64 . AS_QUALapprox=|1162|0;AS_VarDP=36|42|0;BaseQRankSum=-0.696;DP=81;MQRankSum=0.000;QUALapprox=1162;RAW_GT_COUNT=0,1,0;RAW_MQandDP=291600,81;ReadPosRankSum=-0.247;VarDP=78 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:36,42,0:78:99:1|0:1565924_T_TTTTTTTTTTCCCCCAAAAGGGGACCTAGGCGTGGTGGTACAAAACAC:1162,0,1374,1271,1500,2770:1565924:21,15,20,22 +chrX 1565926 . T . . END=1565930 GT:DP:GQ:MIN_DP:PL 0/0:94:99:94:0,120,1800 +chrX 1565931 . C . . END=1565932 GT:DP:GQ:MIN_DP:PL 0/0:83:0:83:0,0,1067 +chrX 1565933 . C . . END=1565953 GT:DP:GQ:MIN_DP:PL 0/0:89:99:89:0,120,1800 +chrX 1565954 . C . . END=1565954 GT:DP:GQ:MIN_DP:PL 0/0:79:0:79:0,0,1661 +chrX 1565955 . T . . END=1565964 GT:DP:GQ:MIN_DP:PL 0/0:78:99:78:0,120,1800 +chrX 1565965 . C . . END=1565967 GT:DP:GQ:MIN_DP:PL 0/0:74:0:74:0,0,1653 +chrX 1565968 . C . . END=1565968 GT:DP:GQ:MIN_DP:PL 0/0:76:99:76:0,120,1800 +chrX 1565969 . T . . END=1565970 GT:DP:GQ:MIN_DP:PL 0/0:72:0:72:0,0,1668 +chrX 1565971 . T . . END=1565971 GT:DP:GQ:MIN_DP:PL 0/0:75:99:75:0,120,1800 +chrX 1565972 . G . . END=1565973 GT:DP:GQ:MIN_DP:PL 0/0:75:0:75:0,0,1618 +chrX 1565974 . T . . END=1565974 GT:DP:GQ:MIN_DP:PL 0/0:77:99:77:0,120,1800 +chrX 1565975 . C . . END=1565976 GT:DP:GQ:MIN_DP:PL 0/0:75:0:75:0,0,1638 +chrX 1565977 . C . . END=1565977 GT:DP:GQ:MIN_DP:PL 0/0:75:99:75:0,120,1800 +chrX 1565978 . A . . END=1565979 GT:DP:GQ:MIN_DP:PL 0/0:73:0:73:0,0,1618 +chrX 1565980 . C . . END=1565980 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1565981 . T . . END=1565982 GT:DP:GQ:MIN_DP:PL 0/0:68:0:68:0,0,1514 +chrX 1565983 . C . . END=1565983 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 1565984 . T . . END=1565985 GT:DP:GQ:MIN_DP:PL 0/0:65:0:65:0,0,1629 +chrX 1565986 . A . . END=1565986 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 1565987 . G . . END=1565987 GT:DP:GQ:MIN_DP:PL 0/0:65:0:65:0,0,1664 +chrX 1565988 . G . . END=1565988 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1565989 . A . . END=1565989 GT:DP:GQ:MIN_DP:PL 0/0:68:0:68:0,0,1638 +chrX 1565990 . G . . END=1565991 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 1565992 . C . . END=1565996 GT:DP:GQ:MIN_DP:PL 0/0:67:0:67:0,0,1667 +chrX 1565997 . G . . END=1565997 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,120,1800 +chrX 1565998 . T . . END=1566002 GT:DP:GQ:MIN_DP:PL 0/0:72:0:72:0,0,1756 +chrX 1566003 . G . . END=1566003 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,120,1800 +chrX 1566004 . G . . END=1566008 GT:DP:GQ:MIN_DP:PL 0/0:71:0:71:0,0,1670 +chrX 1566009 . C . . END=1566009 GT:DP:GQ:MIN_DP:PL 0/0:73:99:73:0,120,1800 +chrX 1566010 . T . . END=1566011 GT:DP:GQ:MIN_DP:PL 0/0:73:0:73:0,0,1796 +chrX 1566012 . G . . END=1566012 GT:DP:GQ:MIN_DP:PL 0/0:73:99:73:0,120,1800 +chrX 1566013 . A . . END=1566014 GT:DP:GQ:MIN_DP:PL 0/0:73:0:73:0,0,1771 +chrX 1566015 . C . . END=1566022 GT:DP:GQ:MIN_DP:PL 0/0:69:21:65:0,21,1711 +chrX 1566023 . T . . END=1566023 GT:DP:GQ:MIN_DP:PL 0/0:56:0:56:0,0,1377 +chrX 1566024 . C . . END=1566093 GT:DP:GQ:MIN_DP:PL 0/0:56:65:56:0,65,1364 +chrX 1566094 . GA G, 421.60 . AS_QUALapprox=|429|0;AS_VarDP=19|21|0;BaseQRankSum=-0.827;DP=49;MQRankSum=0.000;QUALapprox=429;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=0.206;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:19,21,0:40:99:429,0,373,486,436,921:12,7,6,15 +chrX 1566096 . A . . END=1566626 GT:DP:GQ:MIN_DP:PL 0/0:64:90:64:0,90,1593 +chrX 1566627 . A G, 2213.06 . AS_QUALapprox=|2227|0;AS_VarDP=0|70|0;DP=72;QUALapprox=2227;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;VarDP=70 GT:AD:DP:GQ:PL:SB 1/1:0,70,0:70:99:2227,209,0,2227,209,2227:0,0,43,27 +chrX 1566628 . T . . END=1566745 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 1566746 . G C, 899.64 . AS_QUALapprox=|907|0;AS_VarDP=24|33|0;BaseQRankSum=1.185;DP=59;MQRankSum=0.000;QUALapprox=907;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-0.275;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:24,33,0:57:99:907,0,588,978,687,1665:13,11,19,14 +chrX 1566747 . T . . END=1566807 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 1566808 . C T, 578.64 . AS_QUALapprox=|586|0;AS_VarDP=24|21|0;BaseQRankSum=2.651;DP=46;MQRankSum=0.000;QUALapprox=586;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=2.128;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:24,21,0:45:99:586,0,563,657,626,1283:13,11,11,10 +chrX 1566809 . A . . END=1566839 GT:DP:GQ:MIN_DP:PL 0/0:48:90:48:0,90,1316 +chrX 1566840 . GTGAGATGAATTTATGTTGCAAATATAACATATATGGTAGATATTATACACGATATGATATATTTATATA G, 351.60 . AS_QUALapprox=|359|0;AS_VarDP=39|13|0;BaseQRankSum=-0.382;DP=76;MQRankSum=-1.688;QUALapprox=359;RAW_GT_COUNT=0,1,0;RAW_MQandDP=272025,76;ReadPosRankSum=0.478;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:39,13,0:52:99:359,0,1560,476,1614,2090:21,18,6,7 +chrX 1566910 . T . . END=1566910 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1566911 . G . . END=1566911 GT:DP:GQ:MIN_DP:PL 0/0:60:0:60:0,0,1032 +chrX 1566912 . A . . END=1567044 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,103,1712 +chrX 1567045 . TATATA T, 1301.60 . AS_QUALapprox=|1309|0;AS_VarDP=36|34|0;BaseQRankSum=-0.336;DP=75;MQRankSum=0.000;QUALapprox=1309;RAW_GT_COUNT=0,1,0;RAW_MQandDP=270000,75;ReadPosRankSum=0.115;VarDP=70 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:36,34,0:70:99:0|1:1567045_TATATA_T:1309,0,1409,1418,1512,2929:1567045:18,18,12,22 +chrX 1567051 . A . . END=1567097 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 1567098 . G T, 830.64 . AS_QUALapprox=|838|0;AS_VarDP=33|24|0;BaseQRankSum=0.335;DP=58;MQRankSum=0.000;QUALapprox=838;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=1.278;VarDP=57 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:33,24,0:57:99:0|1:1567045_TATATA_T:838,0,1144,937,1216,2153:1567045:18,15,12,12 +chrX 1567099 . G . . END=1567155 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 1567156 . A C, 1030.64 . AS_QUALapprox=|1038|0;AS_VarDP=37|31|0;BaseQRankSum=0.149;DP=68;MQRankSum=0.000;QUALapprox=1038;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=-0.074;VarDP=68 GT:AD:DP:GQ:PL:SB 0/1:37,31,0:68:99:1038,0,1262,1149,1355,2504:20,17,15,16 +chrX 1567157 . T . . END=1567193 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 1567194 . GTATATA G,GTA, 2557.02 . AS_QUALapprox=|1259|1527|0;AS_VarDP=0|30|33|0;DP=70;QUALapprox=2574;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;VarDP=63 GT:AD:DP:GQ:PL:SB 1/2:0,30,33,0:63:99:2574,1315,1361,1166,0,1047,2548,1394,1173,2594:0,0,29,34 +chrX 1567201 . T . . END=1567381 GT:DP:GQ:MIN_DP:PL 0/0:73:99:73:0,107,1800 +chrX 1567382 . GATATA G, 1225.60 . AS_QUALapprox=|1233|0;AS_VarDP=30|32|0;BaseQRankSum=-0.584;DP=67;MQRankSum=0.000;QUALapprox=1233;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=1.268;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:30,32,0:62:99:1233,0,1119,1324,1216,2539:15,15,9,23 +chrX 1567388 . A . . END=1567743 GT:DP:GQ:MIN_DP:PL 0/0:39:33:38:0,33,1031 +chrX 1567744 . TTATATATATATA T, 685.60 . AS_QUALapprox=|693|0;AS_VarDP=5|17|0;BaseQRankSum=2.355;DP=36;MQRankSum=1.952;QUALapprox=693;RAW_GT_COUNT=0,1,0;RAW_MQandDP=125764,36;ReadPosRankSum=1.930;VarDP=22 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:5,17,0:22:99:0|1:1567744_TTATATATATATA_T:693,0,147,708,199,908:1567744:3,2,10,7 +chrX 1567757 . T . . END=1567778 GT:DP:GQ:MIN_DP:PL 0/0:28:53:28:0,53,844 +chrX 1567779 . T G,TATA, 836.64 . AS_QUALapprox=|844|58|0;AS_VarDP=4|22|2|0;BaseQRankSum=-0.673;DP=29;MQRankSum=-0.306;QUALapprox=844;RAW_GT_COUNT=0,1,0;RAW_MQandDP=102564,29;ReadPosRankSum=2.070;VarDP=28 GT:AD:DP:GQ:PL:SB 0/1:4,22,2,0:28:52:844,0,60,786,52,995,866,133,967,1033:2,2,11,13 +chrX 1567780 . T . . END=1567780 GT:DP:GQ:MIN_DP:PL 0/0:28:69:28:0,69,1035 +chrX 1567781 . AGC A, 0.35 . AS_QUALapprox=|6|0;AS_VarDP=26|2|0;BaseQRankSum=0.500;DP=30;MQRankSum=-3.467;QUALapprox=6;RAW_GT_COUNT=0,1,0;RAW_MQandDP=106164,30;ReadPosRankSum=-0.536;VarDP=28 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:26,2,0:28:6:1|0:1567744_TTATATATATATA_T:6,0,1079,84,1085,1169:1567744:12,14,1,1 +chrX 1567784 . T . . END=1567784 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,898 +chrX 1567785 . A . . END=1568281 GT:DP:GQ:MIN_DP:PL 0/0:52:58:52:0,58,963 +chrX 1568282 . C CA, 642.60 . AS_QUALapprox=|650|0;AS_VarDP=24|26|0;BaseQRankSum=1.371;DP=57;MQRankSum=0.000;QUALapprox=650;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-0.291;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:24,26,0:50:99:650,0,596,723,674,1397:10,14,14,12 +chrX 1568283 . A . . END=1568441 GT:DP:GQ:MIN_DP:PL 0/0:54:67:54:0,67,1259 +chrX 1568442 . TAA T, 152.60 . AS_QUALapprox=|160|0;AS_VarDP=28|11|0;BaseQRankSum=-2.035;DP=50;MQRankSum=-2.246;QUALapprox=160;RAW_GT_COUNT=0,1,0;RAW_MQandDP=175425,50;ReadPosRankSum=0.906;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:28,11,0:39:99:160,0,1129,247,1161,1408:15,13,5,6 +chrX 1568445 . A . . END=1568449 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,100,1414 +chrX 1568450 . AAAAAAAAAAAATATATATATATATATATATATAT A, 1111.60 . AS_QUALapprox=|1119|0;AS_VarDP=19|28|0;BaseQRankSum=0.957;DP=50;MQRankSum=2.534;QUALapprox=1119;RAW_GT_COUNT=0,1,0;RAW_MQandDP=171425,50;ReadPosRankSum=0.374;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:19,28,0:47:99:1119,0,695,1176,779,1956:9,10,16,12 +chrX 1568485 . A . . END=1568549 GT:DP:GQ:MIN_DP:PL 0/0:40:75:40:0,75,1125 +chrX 1568550 . GTA G, 976.60 . AS_QUALapprox=|984|0;AS_VarDP=18|25|0;BaseQRankSum=-0.871;DP=47;MQRankSum=0.000;QUALapprox=984;RAW_GT_COUNT=0,1,0;RAW_MQandDP=168625,47;ReadPosRankSum=0.910;VarDP=43 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:18,25,0:43:99:0|1:1568550_GTA_G:984,0,670,1039,745,1784:1568550:9,9,11,14 +chrX 1568553 . T . . END=1568572 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,99,1485 +chrX 1568573 . G A, 1080.64 . AS_QUALapprox=|1088|0;AS_VarDP=18|29|0;BaseQRankSum=0.825;DP=50;MQRankSum=0.000;QUALapprox=1088;RAW_GT_COUNT=0,1,0;RAW_MQandDP=179425,50;ReadPosRankSum=-0.690;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:18,29,0:47:99:0|1:1568550_GTA_G:1088,0,624,1142,710,1852:1568550:9,9,13,16 +chrX 1568574 . T . . END=1568855 GT:DP:GQ:MIN_DP:PL 0/0:53:93:53:0,93,1380 +chrX 1568856 . T A, 584.64 . AS_QUALapprox=|592|0;AS_VarDP=23|17|0;BaseQRankSum=-0.532;DP=43;MQRankSum=0.000;QUALapprox=592;RAW_GT_COUNT=0,1,0;RAW_MQandDP=152800,43;ReadPosRankSum=0.301;VarDP=40 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,17,0:40:99:0|1:1568856_T_A:592,0,849,661,900,1561:1568856:13,10,9,8 +chrX 1568857 . A . . END=1568877 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,102,1530 +chrX 1568878 . G A, 686.64 . AS_QUALapprox=|694|0;AS_VarDP=25|21|0;BaseQRankSum=0.258;DP=46;MQRankSum=0.000;QUALapprox=694;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=-0.694;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,21,0:46:99:0|1:1568856_T_A:694,0,924,769,987,1756:1568856:14,11,11,10 +chrX 1568879 . C . . END=1569148 GT:DP:GQ:MIN_DP:PL 0/0:48:89:48:0,89,1292 +chrX 1569149 . T C, 1029.64 . AS_QUALapprox=|1037|0;AS_VarDP=28|27|0;BaseQRankSum=0.636;DP=56;MQRankSum=0.000;QUALapprox=1037;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-0.227;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,27,0:55:99:0|1:1569149_T_C:1037,0,1083,1122,1164,2286:1569149:19,9,16,11 +chrX 1569150 . G A, 1029.64 . AS_QUALapprox=|1037|0;AS_VarDP=28|27|0;BaseQRankSum=0.948;DP=56;MQRankSum=0.000;QUALapprox=1037;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-0.227;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,27,0:55:99:0|1:1569149_T_C:1037,0,1083,1122,1164,2286:1569149:19,9,16,11 +chrX 1569151 . T . . END=1569335 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 1569336 . G C, 1508.06 . AS_QUALapprox=|1522|0;AS_VarDP=0|49|0;DP=52;QUALapprox=1522;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1522,145,0,1522,145,1522:0,0,20,29 +chrX 1569337 . C . . END=1569442 GT:DP:GQ:MIN_DP:PL 0/0:54:43:54:0,43,1211 +chrX 1569443 . A . . END=1569443 GT:DP:GQ:MIN_DP:PL 0/0:40:16:40:0,16,1111 +chrX 1569444 . A AT, 639.43 . AS_QUALapprox=|652|0;AS_VarDP=20|18|0;BaseQRankSum=-0.357;DP=41;MQRankSum=0.000;QUALapprox=652;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147600,41;ReadPosRankSum=0.784;VarDP=38 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:20,18,0:38:99:0|1:1569444_A_AT:652,0,736,672,791,1461:1569444:11,9,7,8 +chrX 1569445 . A *,AATAATAAT, 639.43 . AS_QUALapprox=|0|652|0;AS_VarDP=20|0|15|0;BaseQRankSum=-0.272;DP=41;MQRankSum=0.000;QUALapprox=652;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147600,41;ReadPosRankSum=0.801;VarDP=35 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|2:20,0,15,0:35:99:0|1:1569444_A_AT:652,621,1417,0,782,736,672,1420,791,1461:1569444:11,9,7,8 +chrX 1569446 . A . . END=1569450 GT:DP:GQ:MIN_DP:PL 0/0:38:45:38:0,45,1132 +chrX 1569451 . A T,AAATAAT,AATAATAATAATAAT,AAATAATAATAATAATAATAAT, 1546.05 . AS_QUALapprox=|1589|93|272|255|0;AS_VarDP=0|31|0|0|0|0;DP=46;QUALapprox=1589;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;VarDP=31 GT:AD:DP:GQ:PL:SB 1/1:0,31,0,0,0,0:31:99:1589,122,0,1496,124,1780,1317,106,1480,1510,1334,113,1569,1526,1616,1557,130,1771,1538,1618,1830:0,0,16,14 +chrX 1569452 . A . . END=1569785 GT:DP:GQ:MIN_DP:PL 0/0:53:70:53:0,70,1395 +chrX 1569786 . C A, 661.64 . AS_QUALapprox=|669|0;AS_VarDP=25|25|0;BaseQRankSum=0.014;DP=51;MQRankSum=0.000;QUALapprox=669;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-0.068;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:25,25,0:50:99:669,0,667,744,743,1486:14,11,11,14 +chrX 1569787 . A . . END=1569932 GT:DP:GQ:MIN_DP:PL 0/0:49:97:49:0,97,1359 +chrX 1569933 . A G, 1074.64 . AS_QUALapprox=|1082|0;AS_VarDP=21|28|0;BaseQRankSum=-0.278;DP=50;MQRankSum=-1.208;QUALapprox=1082;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176000,50;ReadPosRankSum=-1.273;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,28,0:49:99:0|1:1569933_A_G:1082,0,760,1145,844,1989:1569933:11,10,15,13 +chrX 1569934 . C . . END=1569944 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 1569945 . G A, 1084.64 . AS_QUALapprox=|1092|0;AS_VarDP=21|28|0;BaseQRankSum=1.029;DP=49;MQRankSum=-1.208;QUALapprox=1092;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172400,49;ReadPosRankSum=-1.587;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,28,0:49:99:0|1:1569933_A_G:1092,0,760,1155,844,1999:1569933:12,9,15,13 +chrX 1569946 . T . . END=1570020 GT:DP:GQ:MIN_DP:PL 0/0:43:91:43:0,91,1171 +chrX 1570021 . G C, 937.64 . AS_QUALapprox=|945|0;AS_VarDP=21|24|0;BaseQRankSum=0.845;DP=47;MQRankSum=0.000;QUALapprox=945;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=0.306;VarDP=45 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,24,0:45:99:0|1:1570021_G_C:945,0,789,1008,861,1869:1570021:11,10,12,12 +chrX 1570022 . A . . END=1570024 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,120,1800 +chrX 1570025 . A G, 937.64 . AS_QUALapprox=|945|0;AS_VarDP=21|24|0;BaseQRankSum=-0.185;DP=45;MQRankSum=0.000;QUALapprox=945;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=0.483;VarDP=45 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,24,0:45:99:0|1:1570021_G_C:945,0,799,1008,872,1879:1570021:11,10,12,12 +chrX 1570026 . T . . END=1570036 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,117,1755 +chrX 1570037 . C G, 873.64 . AS_QUALapprox=|881|0;AS_VarDP=21|23|0;BaseQRankSum=0.494;DP=44;MQRankSum=0.000;QUALapprox=881;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=0.511;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,23,0:44:99:0|1:1570021_G_C:881,0,802,944,872,1816:1570021:11,10,12,11 +chrX 1570038 . A . . END=1570207 GT:DP:GQ:MIN_DP:PL 0/0:47:37:47:0,37,1229 +chrX 1570208 . CAAA C,CAAAA, 1096.02 . AS_QUALapprox=|820|281|0;AS_VarDP=1|21|14|0;DP=49;MQRankSum=0.000;QUALapprox=1113;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=36 GT:AD:DP:GQ:PL:SB 1/2:1,21,14,0:36:99:1113,293,593,861,0,832,1163,498,879,1330:0,1,16,19 +chrX 1570212 . A . . END=1570248 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,107,1359 +chrX 1570249 . C CA, 600.60 . AS_QUALapprox=|608|0;AS_VarDP=25|25|0;BaseQRankSum=-2.336;DP=54;MQRankSum=0.000;QUALapprox=608;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=1.417;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:25,25,0:50:99:608,0,611,683,686,1369:15,10,8,17 +chrX 1570250 . A . . END=1570288 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,118,1613 +chrX 1570289 . C T, 651.64 . AS_QUALapprox=|659|0;AS_VarDP=28|24|0;BaseQRankSum=1.913;DP=54;MQRankSum=0.000;QUALapprox=659;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=-1.249;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:28,24,0:52:99:659,0,692,742,765,1507:17,11,10,14 +chrX 1570290 . G . . END=1570635 GT:DP:GQ:MIN_DP:PL 0/0:74:99:74:0,120,1800 +chrX 1570636 . G A, 2560.06 . AS_QUALapprox=|2574|0;AS_VarDP=0|77|0;DP=79;QUALapprox=2574;RAW_GT_COUNT=0,0,1;RAW_MQandDP=284400,79;VarDP=77 GT:AD:DP:GQ:PL:SB 1/1:0,77,0:77:99:2574,232,0,2574,232,2574:0,0,41,36 +chrX 1570637 . G . . END=1570901 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,118,1761 +chrX 1570902 . C T, 1768.06 . AS_QUALapprox=|1782|0;AS_VarDP=1|54|0;BaseQRankSum=2.830;DP=56;MQRankSum=0.000;QUALapprox=1782;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;ReadPosRankSum=-0.378;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:1,54,0:55:99:1782,155,0,1785,162,1792:1,0,29,25 +chrX 1570903 . G . . END=1570938 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 1570939 . A G, 1509.06 . AS_QUALapprox=|1523|0;AS_VarDP=0|47|0;DP=50;QUALapprox=1523;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1523,140,0,1523,140,1523:0,0,29,18 +chrX 1570940 . A . . END=1571219 GT:DP:GQ:MIN_DP:PL 0/0:56:87:56:0,87,1518 +chrX 1571220 . A G, 1921.06 . AS_QUALapprox=|1935|0;AS_VarDP=0|60|0;DP=64;QUALapprox=1935;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:1935,179,0,1935,179,1935:0,0,31,29 +chrX 1571221 . G . . END=1571249 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1571250 . A G, 1906.06 . AS_QUALapprox=|1920|0;AS_VarDP=0|59|0;DP=60;QUALapprox=1920;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1920,177,0,1920,177,1920:0,0,28,31 +chrX 1571251 . G . . END=1571416 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,105,1575 +chrX 1571417 . G GT, 519.03 . AS_QUALapprox=|533|0;AS_VarDP=1|31|0;BaseQRankSum=1.965;DP=55;MQRankSum=-0.129;QUALapprox=533;RAW_GT_COUNT=0,0,1;RAW_MQandDP=195649,55;ReadPosRankSum=0.380;VarDP=32 GT:AD:DP:GQ:PL:SB 1/1:1,31,0:32:72:533,72,0,536,90,554:0,1,21,10 +chrX 1571418 . T . . END=1571438 GT:DP:GQ:MIN_DP:PL 0/0:57:57:57:0,57,855 +chrX 1571439 . G . . END=1571440 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,477 +chrX 1571441 . G . . END=1571559 GT:DP:GQ:MIN_DP:PL 0/0:39:33:39:0,33,958 +chrX 1571560 . A C, 1667.06 . AS_QUALapprox=|1681|0;AS_VarDP=0|54|0;DP=55;QUALapprox=1681;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:1681,162,0,1681,162,1681:0,0,24,30 +chrX 1571561 . A . . END=1571681 GT:DP:GQ:MIN_DP:PL 0/0:74:99:74:0,120,1800 +chrX 1571682 . T C, 1044.64 . AS_QUALapprox=|1052|0;AS_VarDP=28|40|0;BaseQRankSum=-0.584;DP=70;MQRankSum=0.255;QUALapprox=1052;RAW_GT_COUNT=0,1,0;RAW_MQandDP=249104,70;ReadPosRankSum=-0.075;VarDP=68 GT:AD:DP:GQ:PL:SB 0/1:28,40,0:68:99:1052,0,720,1136,839,1975:16,12,27,13 +chrX 1571683 . G . . END=1572019 GT:DP:GQ:MIN_DP:PL 0/0:59:61:59:0,61,1195 +chrX 1572020 . G . . END=1572020 GT:DP:GQ:MIN_DP:PL 0/0:66:9:66:0,9,1605 +chrX 1572021 . A . . END=1572223 GT:DP:GQ:MIN_DP:PL 0/0:51:21:50:0,21,1235 +chrX 1572224 . A C, 571.64 . AS_QUALapprox=|579|0;AS_VarDP=27|23|0;BaseQRankSum=-0.162;DP=53;MQRankSum=-1.043;QUALapprox=579;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190564,53;ReadPosRankSum=1.090;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:27,23,0:50:99:579,0,689,659,758,1417:18,9,11,12 +chrX 1572225 . C . . END=1572317 GT:DP:GQ:MIN_DP:PL 0/0:61:29:58:0,29,1305 +chrX 1572318 . G . . END=1572318 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,863 +chrX 1572319 . A . . END=1573198 GT:DP:GQ:MIN_DP:PL 0/0:53:33:52:0,33,962 +chrX 1573199 . GA G, 832.03 . AS_QUALapprox=|846|0;AS_VarDP=1|37|0;DP=54;MQRankSum=0.000;QUALapprox=846;RAW_GT_COUNT=0,0,1;RAW_MQandDP=191761,54;VarDP=38 GT:AD:DP:GQ:PL:SB 1/1:1,37,0:38:99:846,104,0,848,108,852:0,1,19,18 +chrX 1573201 . A . . END=1573479 GT:DP:GQ:MIN_DP:PL 0/0:53:54:53:0,54,1156 +chrX 1573480 . C . . END=1573480 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,0 +chrX 1573481 . G . . END=1573506 GT:DP:GQ:MIN_DP:PL 0/0:37:52:37:0,52,1137 +chrX 1573507 . A . . END=1573507 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,0 +chrX 1573508 . A . . END=1573550 GT:DP:GQ:MIN_DP:PL 0/0:36:38:35:0,38,1035 +chrX 1573551 . G . . END=1573555 GT:DP:GQ:MIN_DP:PL 0/0:50:0:50:0,0,94 +chrX 1573556 . A . . END=1573579 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 1573580 . C . . END=1573581 GT:DP:GQ:MIN_DP:PL 0/0:59:0:59:0,0,1261 +chrX 1573582 . G . . END=1573589 GT:DP:GQ:MIN_DP:PL 0/0:63:79:63:0,79,1635 +chrX 1573590 . T . . END=1573590 GT:DP:GQ:MIN_DP:PL 0/0:57:2:57:0,2,1382 +chrX 1573591 . A . . END=1573654 GT:DP:GQ:MIN_DP:PL 0/0:53:41:53:0,41,1410 +chrX 1573655 . C G, 780.64 . AS_QUALapprox=|788|0;AS_VarDP=21|29|0;BaseQRankSum=0.891;DP=51;MQRankSum=1.441;QUALapprox=788;RAW_GT_COUNT=0,1,0;RAW_MQandDP=177052,51;ReadPosRankSum=0.561;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:21,29,0:50:99:788,0,480,850,567,1417:7,14,12,17 +chrX 1573656 . A . . END=1573918 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1573919 . CAA C,CA, 1468.02 . AS_QUALapprox=|972|853|0;AS_VarDP=1|29|23|0;BaseQRankSum=2.269;DP=70;MQRankSum=0.000;QUALapprox=1485;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;ReadPosRankSum=0.883;VarDP=53 GT:AD:DP:GQ:PL:SB 1/2:1,29,23,0:53:99:1485,518,513,748,0,632,1410,576,757,1411:0,1,35,17 +chrX 1573922 . A . . END=1574149 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 1574150 . T A, 786.64 . AS_QUALapprox=|794|0;AS_VarDP=25|29|0;BaseQRankSum=-1.514;DP=55;MQRankSum=0.000;QUALapprox=794;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-2.161;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:25,29,0:54:99:794,0,691,869,778,1647:15,10,10,19 +chrX 1574151 . T . . END=1574304 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1574305 . G A, 623.64 . AS_QUALapprox=|631|0;AS_VarDP=34|25|0;BaseQRankSum=-0.583;DP=63;MQRankSum=0.000;QUALapprox=631;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=0.069;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:34,25,0:59:99:631,0,944,733,1019,1752:17,17,15,10 +chrX 1574306 . C . . END=1574323 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1574324 . A G, 1736.06 . AS_QUALapprox=|1750|0;AS_VarDP=0|56|0;DP=60;QUALapprox=1750;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1750,168,0,1750,168,1750:0,0,29,27 +chrX 1574325 . C . . END=1575559 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,112,1742 +chrX 1575560 . G A, 601.64 . AS_QUALapprox=|609|0;AS_VarDP=21|24|0;BaseQRankSum=-2.409;DP=48;MQRankSum=0.000;QUALapprox=609;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=1.070;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:21,24,0:45:99:609,0,596,672,667,1339:8,13,8,16 +chrX 1575561 . G . . END=1575967 GT:DP:GQ:MIN_DP:PL 0/0:49:85:49:0,85,1220 +chrX 1575968 . T C, 642.64 . AS_QUALapprox=|650|0;AS_VarDP=21|24|0;BaseQRankSum=-0.376;DP=48;MQRankSum=0.000;QUALapprox=650;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=-0.546;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:21,24,0:45:99:650,0,535,712,607,1319:9,12,9,15 +chrX 1575969 . G . . END=1576847 GT:DP:GQ:MIN_DP:PL 0/0:58:68:58:0,68,1096 +chrX 1576848 . A G, 2353.06 . AS_QUALapprox=|2367|0;AS_VarDP=0|72|0;DP=73;QUALapprox=2367;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;VarDP=72 GT:AD:DP:GQ:PL:SB 1/1:0,72,0:72:99:2367,216,0,2367,216,2367:0,0,30,42 +chrX 1576849 . C . . END=1577092 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1577093 . A G, 667.64 . AS_QUALapprox=|675|0;AS_VarDP=30|26|0;BaseQRankSum=-2.194;DP=59;MQRankSum=0.000;QUALapprox=675;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-0.238;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:30,26,0:56:99:675,0,865,765,943,1708:21,9,14,12 +chrX 1577094 . T . . END=1577276 GT:DP:GQ:MIN_DP:PL 0/0:57:29:49:0,29,1102 +chrX 1577277 . T . . END=1577277 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,966 +chrX 1577278 . T . . END=1577311 GT:DP:GQ:MIN_DP:PL 0/0:42:28:39:0,28,1007 +chrX 1577312 . A . . END=1577312 GT:DP:GQ:MIN_DP:PL 0/0:39:18:39:0,18,1007 +chrX 1577313 . A . . END=1577321 GT:DP:GQ:MIN_DP:PL 0/0:39:82:39:0,82,1151 +chrX 1577322 . T . . END=1577324 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,607 +chrX 1577325 . CTGGATGGA C,CTGGA, 801.02 . AS_QUALapprox=|493|351|0;AS_VarDP=0|12|8|0;DP=41;QUALapprox=818;RAW_GT_COUNT=0,0,1;RAW_MQandDP=145917,41;VarDP=20 GT:AD:DP:GQ:PL:SB 1/2:0,12,8,0:20:99:818,325,336,492,0,467,821,351,495,842:0,0,5,15 +chrX 1577334 . T . . END=1577461 GT:DP:GQ:MIN_DP:PL 0/0:38:34:35:0,34,947 +chrX 1577462 . C . . END=1577462 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,585 +chrX 1577463 . G . . END=1577534 GT:DP:GQ:MIN_DP:PL 0/0:36:48:36:0,48,922 +chrX 1577535 . AGATG A,AGATGGATG, 686.02 . AS_QUALapprox=|465|301|0;AS_VarDP=0|11|7|0;DP=42;QUALapprox=703;RAW_GT_COUNT=0,0,1;RAW_MQandDP=132704,42;VarDP=18 GT:AD:DP:GQ:PL:SB 1/2:0,11,7,0:18:99:703,271,238,425,0,402,700,272,424,699:0,0,14,4 +chrX 1577540 . G . . END=1577631 GT:DP:GQ:MIN_DP:PL 0/0:35:29:33:0,29,848 +chrX 1577632 . TATGG T, 1281.03 . AS_QUALapprox=|1295|0;AS_VarDP=0|29|0;DP=42;QUALapprox=1295;RAW_GT_COUNT=0,0,1;RAW_MQandDP=149044,42;VarDP=29 GT:AD:DP:GQ:PL:SB 1/1:0,29,0:29:88:1295,88,0,1295,88,1295:0,0,18,11 +chrX 1577637 . A . . END=1577706 GT:DP:GQ:MIN_DP:PL 0/0:37:72:37:0,72,932 +chrX 1577707 . A G, 1210.06 . AS_QUALapprox=|1224|0;AS_VarDP=0|37|0;DP=37;QUALapprox=1224;RAW_GT_COUNT=0,0,1;RAW_MQandDP=124963,37;VarDP=37 GT:AD:DP:GQ:PL:SB 1/1:0,37,0:37:99:1224,111,0,1224,111,1224:0,0,21,16 +chrX 1577708 . G . . END=1577727 GT:DP:GQ:MIN_DP:PL 0/0:36:84:36:0,84,997 +chrX 1577728 . CTGGA C,CTGGATGGATGGA, 1044.02 . AS_QUALapprox=|664|473|0;AS_VarDP=0|16|10|0;DP=45;QUALapprox=1061;RAW_GT_COUNT=0,0,1;RAW_MQandDP=150291,45;VarDP=26 GT:AD:DP:GQ:PL:SB 1/2:0,16,10,0:26:99:1061,397,531,626,0,588,1060,498,641,1138:0,0,14,12 +chrX 1577733 . T . . END=1577839 GT:DP:GQ:MIN_DP:PL 0/0:42:32:37:0,32,896 +chrX 1577840 . T G, 2545.06 . AS_QUALapprox=|2559|0;AS_VarDP=1|59|0;DP=60;MQRankSum=0.000;QUALapprox=2559;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:1,59,0:60:99:0|1:1577840_T_G:2559,171,0,2562,178,2569:1577840:0,1,26,33 +chrX 1577841 . T . . END=1577842 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1577843 . G A, 2545.06 . AS_QUALapprox=|2559|0;AS_VarDP=1|59|0;BaseQRankSum=2.187;DP=61;MQRankSum=0.000;QUALapprox=2559;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219136,61;ReadPosRankSum=1.704;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:1,59,0:60:99:0|1:1577840_T_G:2559,171,0,2562,178,2569:1577840:0,1,26,33 +chrX 1577844 . C . . END=1578350 GT:DP:GQ:MIN_DP:PL 0/0:61:20:51:0,20,1195 +chrX 1578351 . A C, 1524.06 . AS_QUALapprox=|1538|0;AS_VarDP=0|47|0;DP=48;QUALapprox=1538;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1538,141,0,1538,141,1538:0,0,22,25 +chrX 1578352 . A . . END=1578614 GT:DP:GQ:MIN_DP:PL 0/0:60:97:60:0,97,1598 +chrX 1578615 . G A, 1555.06 . AS_QUALapprox=|1569|0;AS_VarDP=0|46|0;DP=49;QUALapprox=1569;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1569,138,0,1569,138,1569:0,0,21,25 +chrX 1578616 . G . . END=1578751 GT:DP:GQ:MIN_DP:PL 0/0:39:82:39:0,82,1111 +chrX 1578752 . T C, 1121.06 . AS_QUALapprox=|1135|0;AS_VarDP=0|34|0;DP=36;QUALapprox=1135;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129600,36;VarDP=34 GT:AD:DP:GQ:PL:SB 1/1:0,34,0:34:99:1135,102,0,1135,102,1135:0,0,14,20 +chrX 1578753 . C . . END=1579504 GT:DP:GQ:MIN_DP:PL 0/0:54:85:54:0,85,1116 +chrX 1579505 . A T, 1752.06 . AS_QUALapprox=|1766|0;AS_VarDP=0|55|0;DP=55;QUALapprox=1766;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1766,165,0,1766,165,1766:0,0,33,22 +chrX 1579506 . A . . END=1579776 GT:DP:GQ:MIN_DP:PL 0/0:57:98:57:0,98,1500 +chrX 1579777 . T C, 2174.06 . AS_QUALapprox=|2188|0;AS_VarDP=0|67|0;DP=71;QUALapprox=2188;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255249,71;VarDP=67 GT:AD:DP:GQ:PL:SB 1/1:0,67,0:67:99:2188,200,0,2188,200,2188:0,0,36,31 +chrX 1579778 . A . . END=1579888 GT:DP:GQ:MIN_DP:PL 0/0:69:87:69:0,87,1611 +chrX 1579889 . T . . END=1579889 GT:DP:GQ:MIN_DP:PL 0/0:63:0:63:0,0,1551 +chrX 1579890 . A . . END=1579914 GT:DP:GQ:MIN_DP:PL 0/0:63:25:58:0,25,1377 +chrX 1579915 . T . . END=1579916 GT:DP:GQ:MIN_DP:PL 0/0:64:1:64:0,1,1542 +chrX 1579917 . A . . END=1580098 GT:DP:GQ:MIN_DP:PL 0/0:62:27:60:0,27,1490 +chrX 1580099 . T . . END=1580099 GT:DP:GQ:MIN_DP:PL 0/0:54:8:54:0,8,1409 +chrX 1580100 . A . . END=1580142 GT:DP:GQ:MIN_DP:PL 0/0:47:58:47:0,58,1271 +chrX 1580143 . T . . END=1580143 GT:DP:GQ:MIN_DP:PL 0/0:46:15:46:0,15,1201 +chrX 1580144 . C . . END=1580435 GT:DP:GQ:MIN_DP:PL 0/0:54:50:54:0,50,1136 +chrX 1580436 . AAAT A, 1908.03 . AS_QUALapprox=|1922|0;AS_VarDP=0|43|0;DP=47;QUALapprox=1922;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;VarDP=43 GT:AD:DP:GQ:PL:SB 1/1:0,43,0:43:99:1922,130,0,1922,130,1922:0,0,19,24 +chrX 1580440 . A . . END=1580509 GT:DP:GQ:MIN_DP:PL 0/0:42:76:42:0,76,1137 +chrX 1580510 . A AT, 1831.03 . AS_QUALapprox=|1845|0;AS_VarDP=0|46|0;DP=48;QUALapprox=1845;RAW_GT_COUNT=0,0,1;RAW_MQandDP=164515,48;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1845,138,0,1845,138,1845:0,0,23,23 +chrX 1580511 . A . . END=1580881 GT:DP:GQ:MIN_DP:PL 0/0:58:49:58:0,49,1463 +chrX 1580882 . T C, 751.64 . AS_QUALapprox=|759|0;AS_VarDP=26|30|0;BaseQRankSum=-1.217;DP=58;MQRankSum=0.000;QUALapprox=759;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=0.731;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:26,30,0:56:99:759,0,705,837,795,1632:13,13,12,18 +chrX 1580883 . C . . END=1581165 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,101,1800 +chrX 1581166 . C T, 970.64 . AS_QUALapprox=|978|0;AS_VarDP=31|35|0;BaseQRankSum=0.193;DP=68;MQRankSum=0.000;QUALapprox=978;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=0.906;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:31,35,0:66:99:978,0,839,1071,944,2016:18,13,15,20 +chrX 1581167 . C . . END=1581205 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 1581206 . C T, 937.64 . AS_QUALapprox=|945|0;AS_VarDP=34|35|0;BaseQRankSum=-0.605;DP=72;MQRankSum=0.000;QUALapprox=945;RAW_GT_COUNT=0,1,0;RAW_MQandDP=259200,72;ReadPosRankSum=0.066;VarDP=69 GT:AD:DP:GQ:PL:SB 0/1:34,35,0:69:99:945,0,915,1047,1020,2067:21,13,19,16 +chrX 1581207 . T . . END=1581583 GT:DP:GQ:MIN_DP:PL 0/0:64:44:64:0,44,1374 +chrX 1581584 . T . . END=1581620 GT:DP:GQ:MIN_DP:PL 0/0:65:0:65:0,0,228 +chrX 1581621 . A G, 595.64 . AS_QUALapprox=|603|0;AS_VarDP=17|23|0;BaseQRankSum=-0.164;DP=80;MQRankSum=0.630;QUALapprox=603;RAW_GT_COUNT=0,1,0;RAW_MQandDP=258193,80;ReadPosRankSum=-0.958;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:17,23,0:40:99:603,0,451,716,552,1495:9,8,10,13 +chrX 1581622 . T . . END=1581643 GT:DP:GQ:MIN_DP:PL 0/0:74:0:74:0,0,425 +chrX 1581644 . A . . END=1581688 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,105,1575 +chrX 1581689 . C T, 370.64 . AS_QUALapprox=|378|0;AS_VarDP=36|17|0;BaseQRankSum=0.648;DP=55;MQRankSum=-0.774;QUALapprox=378;RAW_GT_COUNT=0,1,0;RAW_MQandDP=164569,55;ReadPosRankSum=0.500;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:36,17,0:53:99:378,0,733,471,783,1254:18,18,6,11 +chrX 1581690 . T . . END=1581872 GT:DP:GQ:MIN_DP:PL 0/0:42:43:42:0,43,911 +chrX 1581873 . C . . END=1581902 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,273 +chrX 1581903 . G T, 150.98 . AS_QUALapprox=|177|0;AS_VarDP=25|6|0;BaseQRankSum=0.542;DP=43;MQRankSum=-0.027;QUALapprox=177;RAW_GT_COUNT=0,1,0;RAW_MQandDP=128234,43;ReadPosRankSum=-2.127;VarDP=31 GT:AD:DP:GQ:PL:SB 0/1:25,6,0:31:99:177,0,955,229,964,1221:13,11,5,1 +chrX 1581904 . C . . END=1581907 GT:DP:GQ:MIN_DP:PL 0/0:44:0:42:0,0,0 +chrX 1581908 . TATTA *,T, 897 . AS_QUALapprox=|0|1010|0;AS_VarDP=0|14|24|0;DP=44;QUALapprox=1152;RAW_GT_COUNT=0,0,1;RAW_MQandDP=131598,44;VarDP=38 GT:AD:DP:GQ:PL:SB 1/2:0,14,24,0:38:99:1152,910,897,142,0,241,1138,935,237,1221:0,0,19,19 +chrX 1581911 . TA *,T, 31 . AS_QUALapprox=|0|174|0;AS_VarDP=0|36|2|0;DP=42;QUALapprox=1156;RAW_GT_COUNT=0,0,1;RAW_MQandDP=124398,42;VarDP=38 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|2:0,36,2,0:38:28:0|1:1581906_GATA_G:1156,69,28,982,0,1022,1135,102,1019,1177:1581906:0,0,19,19 +chrX 1581913 . A . . END=1581970 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,496 +chrX 1581971 . T A, 1086.01 . AS_QUALapprox=|1121|0;AS_VarDP=3|27|0;BaseQRankSum=1.636;DP=40;MQRankSum=1.048;QUALapprox=1121;RAW_GT_COUNT=0,0,1;RAW_MQandDP=123523,40;ReadPosRankSum=0.681;VarDP=30 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:3,27,0:30:47:0|1:1581971_T_A:1121,47,0,1137,79,1190:1581971:1,0,14,13 +chrX 1581972 . A . . END=1582001 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,531 +chrX 1582002 . G C, 1312.93 . AS_QUALapprox=|1329|0;AS_VarDP=3|34|0;DP=47;MQRankSum=1.265;QUALapprox=1329;RAW_GT_COUNT=0,0,1;RAW_MQandDP=149955,47;VarDP=37 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:3,34,0:37:68:0|1:1581971_T_A:1329,68,0,1358,99,1438:1581971:1,0,20,14 +chrX 1582003 . A . . END=1582011 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,590 +chrX 1582012 . C . . END=1582127 GT:DP:GQ:MIN_DP:PL 0/0:28:35:26:0,35,705 +chrX 1582128 . A . . END=1582128 GT:DP:GQ:MIN_DP:PL 0/0:25:5:25:0,5,598 +chrX 1582129 . T . . END=1582184 GT:DP:GQ:MIN_DP:PL 0/0:25:20:23:0,20,620 +chrX 1582185 . A . . END=1582187 GT:DP:GQ:MIN_DP:PL 0/0:21:0:21:0,0,520 +chrX 1582188 . T . . END=1582222 GT:DP:GQ:MIN_DP:PL 0/0:24:53:24:0,53,635 +chrX 1582223 . C T, 1001.06 . AS_QUALapprox=|1015|0;AS_VarDP=0|28|0;DP=28;QUALapprox=1015;RAW_GT_COUNT=0,0,1;RAW_MQandDP=66649,28;VarDP=28 GT:AD:DP:GQ:PL:SB 1/1:0,28,0:28:84:1015,84,0,1015,84,1015:0,0,17,11 +chrX 1582224 . C . . END=1582243 GT:DP:GQ:MIN_DP:PL 0/0:30:49:30:0,49,843 +chrX 1582244 . G T, 238.64 . AS_QUALapprox=|246|0;AS_VarDP=23|11|0;BaseQRankSum=1.244;DP=35;MQRankSum=-2.617;QUALapprox=246;RAW_GT_COUNT=0,1,0;RAW_MQandDP=93240,35;ReadPosRankSum=0.405;VarDP=34 GT:AD:DP:GQ:PL:SB 0/1:23,11,0:34:99:246,0,613,315,645,960:10,13,9,2 +chrX 1582245 . C . . END=1582282 GT:DP:GQ:MIN_DP:PL 0/0:42:53:42:0,53,983 +chrX 1582283 . T C, 841.64 . AS_QUALapprox=|849|0;AS_VarDP=25|22|0;BaseQRankSum=-1.033;DP=47;MQRankSum=-3.154;QUALapprox=849;RAW_GT_COUNT=0,1,0;RAW_MQandDP=146949,47;ReadPosRankSum=-0.384;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,22,0:47:99:0|1:1582283_T_C:849,0,973,924,1039,1963:1582283:12,13,12,10 +chrX 1582284 . A . . END=1582291 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,110,1394 +chrX 1582292 . A G, 844.64 . AS_QUALapprox=|852|0;AS_VarDP=24|22|0;BaseQRankSum=0.221;DP=46;MQRankSum=-3.076;QUALapprox=852;RAW_GT_COUNT=0,1,0;RAW_MQandDP=143349,46;ReadPosRankSum=-0.297;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,22,0:46:99:0|1:1582283_T_C:852,0,942,924,1008,1932:1582283:11,13,12,10 +chrX 1582293 . T . . END=1582310 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 1582311 . A G, 954.64 . AS_QUALapprox=|962|0;AS_VarDP=29|25|0;BaseQRankSum=-1.162;DP=55;MQRankSum=-3.565;QUALapprox=962;RAW_GT_COUNT=0,1,0;RAW_MQandDP=177749,55;ReadPosRankSum=0.508;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,25,0:54:99:0|1:1582283_T_C:962,0,1142,1050,1218,2267:1582283:13,16,12,13 +chrX 1582312 . T . . END=1582319 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 1582320 . TGTAA T, 993.60 . AS_QUALapprox=|1001|0;AS_VarDP=30|26|0;BaseQRankSum=-0.207;DP=57;MQRankSum=-3.679;QUALapprox=1001;RAW_GT_COUNT=0,1,0;RAW_MQandDP=188245,57;ReadPosRankSum=0.770;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:30,26,0:56:99:0|1:1582283_T_C:1001,0,1181,1092,1260,2351:1582283:14,16,11,15 +chrX 1582325 . T . . END=1582336 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 1582337 . C T, 980.64 . AS_QUALapprox=|988|0;AS_VarDP=31|26|0;BaseQRankSum=0.489;DP=58;MQRankSum=-3.276;QUALapprox=988;RAW_GT_COUNT=0,1,0;RAW_MQandDP=196820,58;ReadPosRankSum=1.089;VarDP=57 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:31,26,0:57:99:0|1:1582283_T_C:988,0,1223,1082,1302,2383:1582283:15,16,10,16 +chrX 1582338 . A . . END=1582343 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 1582344 . T A, 977.64 . AS_QUALapprox=|985|0;AS_VarDP=32|26|0;BaseQRankSum=0.311;DP=61;MQRankSum=-3.325;QUALapprox=985;RAW_GT_COUNT=0,1,0;RAW_MQandDP=207620,61;ReadPosRankSum=0.892;VarDP=58 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:32,26,0:58:99:0|1:1582283_T_C:985,0,1245,1082,1323,2405:1582283:15,17,10,16 +chrX 1582345 . G . . END=1582459 GT:DP:GQ:MIN_DP:PL 0/0:61:41:61:0,41,1512 +chrX 1582460 . C CATTTATTT, 794.60 . AS_QUALapprox=|802|0;AS_VarDP=29|23|0;BaseQRankSum=-1.292;DP=61;MQRankSum=0.929;QUALapprox=802;RAW_GT_COUNT=0,1,0;RAW_MQandDP=218304,61;ReadPosRankSum=-2.673;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,23,0:52:99:0|1:1582460_C_CATTTATTT:802,0,1143,890,1211,2101:1582460:13,16,8,15 +chrX 1582461 . A . . END=1582462 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 1582463 . T TAA, 1278.60 . AS_QUALapprox=|1286|0;AS_VarDP=28|33|0;BaseQRankSum=1.295;DP=62;MQRankSum=-0.888;QUALapprox=1286;RAW_GT_COUNT=0,1,0;RAW_MQandDP=221904,62;ReadPosRankSum=2.285;VarDP=61 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:28,33,0:61:99:1|0:1582460_C_CATTTATTT:1286,0,1056,1370,1155,2526:1582460:11,17,13,20 +chrX 1582464 . T TTAATTA, 1278.60 . AS_QUALapprox=|1286|0;AS_VarDP=28|33|0;BaseQRankSum=0.909;DP=62;MQRankSum=-0.888;QUALapprox=1286;RAW_GT_COUNT=0,1,0;RAW_MQandDP=221904,62;ReadPosRankSum=1.832;VarDP=61 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:28,33,0:61:99:1|0:1582460_C_CATTTATTT:1286,0,1056,1370,1155,2526:1582460:11,17,13,20 +chrX 1582465 . A . . END=1582478 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1582479 . T C, 1275.64 . AS_QUALapprox=|1283|0;AS_VarDP=29|33|0;BaseQRankSum=0.163;DP=63;MQRankSum=-0.905;QUALapprox=1283;RAW_GT_COUNT=0,1,0;RAW_MQandDP=225504,63;ReadPosRankSum=0.910;VarDP=62 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:29,33,0:62:99:1|0:1582460_C_CATTTATTT:1283,0,1068,1370,1167,2538:1582460:11,18,13,20 +chrX 1582480 . T . . END=1582607 GT:DP:GQ:MIN_DP:PL 0/0:66:20:50:0,20,1252 +chrX 1582608 . CTT C, 180.60 . AS_QUALapprox=|188|0;AS_VarDP=10|8|0;BaseQRankSum=-0.722;DP=34;MQRankSum=1.006;QUALapprox=188;RAW_GT_COUNT=0,1,0;RAW_MQandDP=118400,34;ReadPosRankSum=-0.328;VarDP=18 GT:AD:DP:GQ:PL:SB 0/1:10,8,0:18:99:188,0,227,218,251,469:7,3,5,3 +chrX 1582611 . T . . END=1582705 GT:DP:GQ:MIN_DP:PL 0/0:28:33:18:0,33,495 +chrX 1582706 . G A, 772.64 . AS_QUALapprox=|780|0;AS_VarDP=20|20|0;BaseQRankSum=-0.080;DP=44;MQRankSum=0.000;QUALapprox=780;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=0.816;VarDP=40 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:20,20,0:40:99:0|1:1582706_G_A:780,0,780,840,840,1680:1582706:11,9,11,9 +chrX 1582707 . G . . END=1582720 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,115,1244 +chrX 1582721 . T C, 853.64 . AS_QUALapprox=|861|0;AS_VarDP=21|22|0;BaseQRankSum=-1.788;DP=46;MQRankSum=0.000;QUALapprox=861;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=0.170;VarDP=43 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,22,0:43:99:0|1:1582706_G_A:861,0,816,924,882,1806:1582706:12,9,11,11 +chrX 1582722 . G C, 850.64 . AS_QUALapprox=|858|0;AS_VarDP=22|22|0;BaseQRankSum=-1.312;DP=47;MQRankSum=0.000;QUALapprox=858;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=0.158;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,22,0:44:99:0|1:1582706_G_A:858,0,837,924,904,1827:1582706:12,10,11,11 +chrX 1582723 . T . . END=1582732 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,120,1800 +chrX 1582733 . C A, 805.64 . AS_QUALapprox=|813|0;AS_VarDP=23|21|0;BaseQRankSum=-0.983;DP=47;MQRankSum=0.000;QUALapprox=813;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=0.223;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,21,0:44:99:0|1:1582706_G_A:813,0,872,882,935,1817:1582706:13,10,10,11 +chrX 1582734 . C . . END=1582829 GT:DP:GQ:MIN_DP:PL 0/0:55:76:55:0,76,1325 +chrX 1582830 . G C, 765.64 . AS_QUALapprox=|773|0;AS_VarDP=34|31|0;BaseQRankSum=0.077;DP=67;MQRankSum=0.000;QUALapprox=773;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=0.946;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:34,31,0:65:99:773,0,867,875,960,1835:17,17,18,13 +chrX 1582831 . C . . END=1582849 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1582850 . C T, 784.64 . AS_QUALapprox=|792|0;AS_VarDP=33|31|0;BaseQRankSum=-0.282;DP=68;MQRankSum=0.000;QUALapprox=792;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=-0.054;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:33,31,0:64:99:792,0,841,889,934,1823:18,15,16,15 +chrX 1582851 . G . . END=1583014 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 1583015 . A . . END=1583015 GT:DP:GQ:MIN_DP:PL 0/0:67:18:67:0,18,1782 +chrX 1583016 . T . . END=1583016 GT:DP:GQ:MIN_DP:PL 0/0:66:59:66:0,59,1875 +chrX 1583017 . T TAA, 772.60 . AS_QUALapprox=|780|0;AS_VarDP=23|26|0;BaseQRankSum=-0.132;DP=60;MQRankSum=0.000;QUALapprox=780;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=0.190;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:23,26,0:49:99:780,0,688,850,766,1616:9,14,12,14 +chrX 1583018 . A . . END=1583082 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 1583083 . G T, 1163.64 . AS_QUALapprox=|1171|0;AS_VarDP=23|30|0;BaseQRankSum=0.884;DP=54;MQRankSum=0.000;QUALapprox=1171;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=-0.138;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,30,0:53:99:0|1:1583083_G_T:1171,0,809,1240,900,2140:1583083:13,10,14,16 +chrX 1583084 . G . . END=1583088 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 1583089 . C T, 1160.64 . AS_QUALapprox=|1168|0;AS_VarDP=24|30|0;BaseQRankSum=0.516;DP=54;MQRankSum=0.000;QUALapprox=1168;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=-0.747;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,30,0:54:99:0|1:1583083_G_T:1168,0,851,1240,942,2182:1583083:14,10,14,16 +chrX 1583090 . G . . END=1583094 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 1583095 . T A, 1204.64 . AS_QUALapprox=|1212|0;AS_VarDP=23|31|0;BaseQRankSum=-0.337;DP=54;MQRankSum=0.000;QUALapprox=1212;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=-0.461;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,31,0:54:99:0|1:1583083_G_T:1212,0,872,1281,966,2247:1583083:13,10,15,16 +chrX 1583096 . A . . END=1583104 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 1583105 . A G, 1055.64 . AS_QUALapprox=|1063|0;AS_VarDP=24|28|0;BaseQRankSum=-0.896;DP=54;MQRankSum=0.000;QUALapprox=1063;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=0.184;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,28,0:52:99:0|1:1583083_G_T:1063,0,913,1135,998,2133:1583083:14,10,15,13 +chrX 1583106 . G . . END=1583151 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 1583152 . G T, 638.64 . AS_QUALapprox=|646|0;AS_VarDP=26|25|0;BaseQRankSum=0.012;DP=52;MQRankSum=0.000;QUALapprox=646;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=0.085;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:26,25,0:51:99:646,0,666,724,741,1464:14,12,12,13 +chrX 1583153 . T . . END=1583418 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,105,1429 +chrX 1583419 . T C, 964.64 . AS_QUALapprox=|972|0;AS_VarDP=34|28|0;BaseQRankSum=-0.276;DP=65;MQRankSum=0.000;QUALapprox=972;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=-1.910;VarDP=62 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:34,28,0:62:99:0|1:1583419_T_C:972,0,1271,1074,1356,2430:1583419:15,19,15,13 +chrX 1583420 . A . . END=1583444 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1583445 . A G, 825.64 . AS_QUALapprox=|833|0;AS_VarDP=34|23|0;BaseQRankSum=-1.370;DP=59;MQRankSum=0.000;QUALapprox=833;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-0.569;VarDP=57 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:34,23,0:57:99:0|1:1583419_T_C:833,0,1296,935,1366,2301:1583419:14,20,11,12 +chrX 1583446 . G . . END=1583509 GT:DP:GQ:MIN_DP:PL 0/0:55:97:55:0,97,1530 +chrX 1583510 . A . . END=1583510 GT:DP:GQ:MIN_DP:PL 0/0:53:0:53:0,0,232 +chrX 1583511 . T . . END=1583511 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 1583512 . A . . END=1583512 GT:DP:GQ:MIN_DP:PL 0/0:52:0:52:0,0,186 +chrX 1583513 . T . . END=1583531 GT:DP:GQ:MIN_DP:PL 0/0:54:78:54:0,78,1170 +chrX 1583532 . T . . END=1583544 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,352 +chrX 1583545 . T . . END=1583575 GT:DP:GQ:MIN_DP:PL 0/0:46:60:46:0,60,900 +chrX 1583576 . CT C, 532.60 . AS_QUALapprox=|540|0;AS_VarDP=5|14|0;BaseQRankSum=-0.781;DP=32;MQRankSum=1.897;QUALapprox=540;RAW_GT_COUNT=0,1,0;RAW_MQandDP=102979,32;ReadPosRankSum=0.093;VarDP=19 GT:AD:DP:GQ:PL:SB 0/1:5,14,0:19:99:540,0,117,555,161,715:1,4,3,11 +chrX 1583578 . T . . END=1583579 GT:DP:GQ:MIN_DP:PL 0/0:30:84:30:0,84,1260 +chrX 1583580 . CTTTCTTTCTTT C,CCTTT, 497.60 . AS_QUALapprox=|505|117|0;AS_VarDP=5|10|0|0;BaseQRankSum=0.000;DP=40;MQRankSum=1.579;QUALapprox=505;RAW_GT_COUNT=0,1,0;RAW_MQandDP=128883,40;ReadPosRankSum=1.226;VarDP=15 GT:AD:DP:GQ:PL:SB 0/1:5,10,0,0:15:99:505,0,443,388,170,753,503,361,702,898:1,4,3,7 +chrX 1583591 . T *,C,TCTTC,TCTTCCTTC, 425.97 . AS_QUALapprox=|0|666|433|668|0;AS_VarDP=0|10|0|0|4|0;DP=40;QUALapprox=1399;RAW_GT_COUNT=0,0,1;RAW_MQandDP=128883,40;VarDP=14 GT:AD:DP:GQ:PL:SB 1/4:0,10,0,0,4,0:14:99:1399,501,423,761,150,733,1029,408,534,966,760,0,587,558,731,1256,465,771,994,770,1230:0,0,3,11 +chrX 1583592 . C . . END=1583653 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,99,1020 +chrX 1583654 . T TTCTC, 714.60 . AS_QUALapprox=|722|0;AS_VarDP=25|19|0;BaseQRankSum=0.678;DP=48;MQRankSum=-2.006;QUALapprox=722;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169217,48;ReadPosRankSum=1.588;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:25,19,0:44:99:722,0,946,797,1003,1800:11,14,9,10 +chrX 1583655 . T . . END=1583661 GT:DP:GQ:MIN_DP:PL 0/0:50:87:50:0,87,1351 +chrX 1583662 . T . . END=1583662 GT:DP:GQ:MIN_DP:PL 0/0:52:17:52:0,17,1409 +chrX 1583663 . T . . END=1583672 GT:DP:GQ:MIN_DP:PL 0/0:52:40:52:0,40,1444 +chrX 1583673 . G . . END=1583673 GT:DP:GQ:MIN_DP:PL 0/0:50:0:50:0,0,1044 +chrX 1583674 . T . . END=1583741 GT:DP:GQ:MIN_DP:PL 0/0:47:77:47:0,77,1245 +chrX 1583742 . A G, 1213.64 . AS_QUALapprox=|1221|0;AS_VarDP=23|31|0;BaseQRankSum=-0.146;DP=56;MQRankSum=0.000;QUALapprox=1221;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-0.713;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,31,0:54:99:0|1:1583742_A_G:1221,0,852,1290,945,2235:1583742:10,13,19,12 +chrX 1583743 . C . . END=1583748 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 1583749 . G A, 1210.64 . AS_QUALapprox=|1218|0;AS_VarDP=24|31|0;BaseQRankSum=1.815;DP=57;MQRankSum=0.000;QUALapprox=1218;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=0.068;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,31,0:55:99:0|1:1583742_A_G:1218,0,884,1290,977,2267:1583742:11,13,19,12 +chrX 1583750 . G . . END=1583786 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 1583787 . C G, 1159.64 . AS_QUALapprox=|1167|0;AS_VarDP=27|30|0;BaseQRankSum=0.886;DP=60;MQRankSum=0.000;QUALapprox=1167;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=1.878;VarDP=57 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,30,0:57:99:0|1:1583787_C_G:1167,0,982,1248,1072,2320:1583787:14,13,18,12 +chrX 1583788 . T . . END=1583802 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 1583803 . G A, 1168.64 . AS_QUALapprox=|1176|0;AS_VarDP=24|30|0;BaseQRankSum=1.737;DP=55;MQRankSum=0.000;QUALapprox=1176;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=0.171;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,30,0:54:99:0|1:1583787_C_G:1176,0,887,1248,977,2225:1583787:13,11,18,12 +chrX 1583804 . T . . END=1584063 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,113,1637 +chrX 1584064 . G C, 533.64 . AS_QUALapprox=|541|0;AS_VarDP=36|22|0;BaseQRankSum=0.312;DP=60;MQRankSum=0.000;QUALapprox=541;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=0.096;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:36,22,0:58:99:541,0,956,648,1022,1671:23,13,14,8 +chrX 1584065 . T . . END=1584224 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 1584225 . A T, 899.64 . AS_QUALapprox=|907|0;AS_VarDP=45|26|0;BaseQRankSum=1.147;DP=72;MQRankSum=0.789;QUALapprox=907;RAW_GT_COUNT=0,1,0;RAW_MQandDP=256384,72;ReadPosRankSum=-0.125;VarDP=71 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:45,26,0:71:99:0|1:1584225_A_T:907,0,1717,1042,1795,2837:1584225:22,23,14,12 +chrX 1584226 . T A, 899.64 . AS_QUALapprox=|907|0;AS_VarDP=45|26|0;BaseQRankSum=-0.107;DP=72;MQRankSum=0.789;QUALapprox=907;RAW_GT_COUNT=0,1,0;RAW_MQandDP=256384,72;ReadPosRankSum=0.208;VarDP=71 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:45,26,0:71:99:0|1:1584225_A_T:907,0,1717,1042,1795,2837:1584225:22,23,14,12 +chrX 1584227 . T . . END=1584672 GT:DP:GQ:MIN_DP:PL 0/0:61:90:61:0,90,1508 +chrX 1584673 . C G, 526.64 . AS_QUALapprox=|534|0;AS_VarDP=26|21|0;BaseQRankSum=-0.047;DP=48;MQRankSum=0.000;QUALapprox=534;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=-1.070;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:26,21,0:47:99:534,0,713,612,776,1388:11,15,9,12 +chrX 1584674 . C . . END=1584713 GT:DP:GQ:MIN_DP:PL 0/0:44:94:44:0,94,1306 +chrX 1584714 . T C, 511.64 . AS_QUALapprox=|519|0;AS_VarDP=24|21|0;BaseQRankSum=-2.224;DP=50;MQRankSum=0.000;QUALapprox=519;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=1.570;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:24,21,0:45:99:519,0,690,591,752,1344:11,13,13,8 +chrX 1584715 . G . . END=1584942 GT:DP:GQ:MIN_DP:PL 0/0:53:77:53:0,77,1310 +chrX 1584943 . AAG A, 1083.60 . AS_QUALapprox=|1091|0;AS_VarDP=26|29|0;BaseQRankSum=1.590;DP=59;MQRankSum=0.000;QUALapprox=1091;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-0.936;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:26,29,0:55:99:1091,0,991,1170,1078,2248:14,12,18,11 +chrX 1584946 . A . . END=1584970 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 1584971 . A G, 766.64 . AS_QUALapprox=|774|0;AS_VarDP=26|32|0;BaseQRankSum=-0.646;DP=61;MQRankSum=0.000;QUALapprox=774;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-0.798;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:26,32,0:58:99:774,0,636,852,731,1582:14,12,23,9 +chrX 1584972 . T . . END=1585114 GT:DP:GQ:MIN_DP:PL 0/0:71:92:71:0,92,1800 +chrX 1585115 . T C, 973.64 . AS_QUALapprox=|981|0;AS_VarDP=26|39|0;BaseQRankSum=-2.252;DP=69;MQRankSum=-3.021;QUALapprox=981;RAW_GT_COUNT=0,1,0;RAW_MQandDP=228557,69;ReadPosRankSum=-0.817;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:26,39,0:65:99:981,0,690,1059,806,1864:10,16,14,25 +chrX 1585116 . G . . END=1585152 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1585153 . C T, 1424.64 . AS_QUALapprox=|1432|0;AS_VarDP=23|36|0;BaseQRankSum=-0.282;DP=60;MQRankSum=-3.143;QUALapprox=1432;RAW_GT_COUNT=0,1,0;RAW_MQandDP=195356,60;ReadPosRankSum=-0.187;VarDP=59 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,36,0:59:99:0|1:1585153_C_T:1432,0,857,1501,966,2467:1585153:10,13,11,25 +chrX 1585154 . A G, 1424.64 . AS_QUALapprox=|1432|0;AS_VarDP=23|36|0;BaseQRankSum=-0.637;DP=60;MQRankSum=-3.143;QUALapprox=1432;RAW_GT_COUNT=0,1,0;RAW_MQandDP=195356,60;ReadPosRankSum=-0.187;VarDP=59 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,36,0:59:99:0|1:1585153_C_T:1432,0,857,1501,966,2467:1585153:10,13,11,25 +chrX 1585155 . A . . END=1585167 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 1585168 . T A, 1293.64 . AS_QUALapprox=|1301|0;AS_VarDP=25|34|0;BaseQRankSum=0.287;DP=59;MQRankSum=-3.246;QUALapprox=1301;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194267,59;ReadPosRankSum=1.279;VarDP=59 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,34,0:59:99:0|1:1585153_C_T:1301,0,927,1377,1029,2406:1585153:10,15,12,22 +chrX 1585169 . C . . END=1585198 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 1585199 . G A, 918.64 . AS_QUALapprox=|926|0;AS_VarDP=20|32|0;BaseQRankSum=0.147;DP=55;MQRankSum=-3.520;QUALapprox=926;RAW_GT_COUNT=0,1,0;RAW_MQandDP=182476,55;ReadPosRankSum=-0.038;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:20,32,0:52:99:926,0,504,986,600,1586:7,13,13,19 +chrX 1585200 . A . . END=1585366 GT:DP:GQ:MIN_DP:PL 0/0:53:85:53:0,85,1245 +chrX 1585367 . A C, 738.64 . AS_QUALapprox=|746|0;AS_VarDP=19|20|0;BaseQRankSum=-2.814;DP=40;MQRankSum=-1.360;QUALapprox=746;RAW_GT_COUNT=0,1,0;RAW_MQandDP=142397,40;ReadPosRankSum=0.169;VarDP=39 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:19,20,0:39:99:0|1:1585367_A_C:746,0,682,802,742,1545:1585367:16,3,9,11 +chrX 1585368 . G . . END=1585375 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1116 +chrX 1585376 . G A, 732.64 . AS_QUALapprox=|740|0;AS_VarDP=21|20|0;BaseQRankSum=-1.180;DP=41;MQRankSum=-1.432;QUALapprox=740;RAW_GT_COUNT=0,1,0;RAW_MQandDP=145997,41;ReadPosRankSum=0.112;VarDP=41 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,20,0:41:99:0|1:1585367_A_C:740,0,745,802,805,1607:1585367:17,4,9,11 +chrX 1585377 . A . . END=1585385 GT:DP:GQ:MIN_DP:PL 0/0:40:93:40:0,93,1181 +chrX 1585386 . CAAAA C, 611.60 . AS_QUALapprox=|619|0;AS_VarDP=14|16|0;BaseQRankSum=-0.768;DP=49;MQRankSum=-0.869;QUALapprox=619;RAW_GT_COUNT=0,1,0;RAW_MQandDP=174797,49;ReadPosRankSum=-1.903;VarDP=30 GT:AD:DP:GQ:PL:SB 0/1:14,16,0:30:99:619,0,511,661,560,1221:11,3,8,8 +chrX 1585391 . A . . END=1585449 GT:DP:GQ:MIN_DP:PL 0/0:57:87:57:0,87,1305 +chrX 1585450 . C T, 1000.64 . AS_QUALapprox=|1008|0;AS_VarDP=34|37|0;BaseQRankSum=0.153;DP=72;MQRankSum=0.000;QUALapprox=1008;RAW_GT_COUNT=0,1,0;RAW_MQandDP=259200,72;ReadPosRankSum=1.364;VarDP=71 GT:AD:DP:GQ:PL:SB 0/1:34,37,0:71:99:1008,0,904,1110,1015,2125:20,14,22,15 +chrX 1585451 . G . . END=1585901 GT:DP:GQ:MIN_DP:PL 0/0:73:93:73:0,93,1800 +chrX 1585902 . GT G, 815.60 . AS_QUALapprox=|823|0;AS_VarDP=30|34|0;BaseQRankSum=1.441;DP=71;MQRankSum=0.000;QUALapprox=823;RAW_GT_COUNT=0,1,0;RAW_MQandDP=255600,71;ReadPosRankSum=-1.743;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:30,34,0:64:99:823,0,773,913,874,1787:13,17,13,21 +chrX 1585904 . T . . END=1585938 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1585939 . TTTG T, 994.60 . AS_QUALapprox=|1002|0;AS_VarDP=30|26|0;BaseQRankSum=1.286;DP=63;MQRankSum=0.000;QUALapprox=1002;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=0.784;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:30,26,0:56:99:0|1:1585939_TTTG_T:1002,0,1139,1092,1218,2310:1585939:17,13,14,12 +chrX 1585943 . T . . END=1585966 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 1585967 . GTTTGTT G, 1041.60 . AS_QUALapprox=|1049|0;AS_VarDP=26|27|0;BaseQRankSum=0.177;DP=54;MQRankSum=0.000;QUALapprox=1049;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=-0.181;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,27,0:53:99:0|1:1585939_TTTG_T:1049,0,1010,1127,1092,2219:1585939:18,8,15,12 +chrX 1585974 . T . . END=1585983 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 1585984 . T C, 966.64 . AS_QUALapprox=|974|0;AS_VarDP=27|26|0;BaseQRankSum=-0.953;DP=55;MQRankSum=-0.981;QUALapprox=974;RAW_GT_COUNT=0,1,0;RAW_MQandDP=197649,55;ReadPosRankSum=1.103;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,26,0:53:99:0|1:1585939_TTTG_T:974,0,1013,1055,1091,2146:1585939:20,7,17,9 +chrX 1585985 . G . . END=1586173 GT:DP:GQ:MIN_DP:PL 0/0:62:67:62:0,67,1547 +chrX 1586174 . C T, 957.64 . AS_QUALapprox=|965|0;AS_VarDP=29|35|0;BaseQRankSum=1.965;DP=67;MQRankSum=1.588;QUALapprox=965;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234276,67;ReadPosRankSum=-0.587;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:29,35,0:64:99:965,0,670,1051,775,1827:13,16,19,16 +chrX 1586175 . C . . END=1586881 GT:DP:GQ:MIN_DP:PL 0/0:50:20:49:0,20,1186 +chrX 1586882 . G C, 797.64 . AS_QUALapprox=|805|0;AS_VarDP=25|31|0;BaseQRankSum=-1.338;DP=59;MQRankSum=0.000;QUALapprox=805;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-1.896;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:25,31,0:56:99:805,0,642,879,734,1614:11,14,12,19 +chrX 1586883 . A . . END=1587450 GT:DP:GQ:MIN_DP:PL 0/0:55:90:55:0,90,1306 +chrX 1587451 . T TG, 677.60 . AS_QUALapprox=|685|0;AS_VarDP=16|24|0;BaseQRankSum=-1.899;DP=45;MQRankSum=0.000;QUALapprox=685;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=-0.621;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:16,24,0:40:99:685,0,431,733,503,1236:7,9,13,11 +chrX 1587452 . G . . END=1587607 GT:DP:GQ:MIN_DP:PL 0/0:46:88:46:0,88,1014 +chrX 1587608 . TTCCCCTCCCCTCCCTTCCCCTCCTCTACCTTCCCTTCCCCTCCCC T, 0.04 . AS_QUALapprox=|3|0;AS_VarDP=0|0|0;BaseQRankSum=-0.674;DP=30;MQRankSum=0.000;QUALapprox=3;RAW_GT_COUNT=0,1,0;RAW_MQandDP=102105,30;ReadPosRankSum=0.674;VarDP=6 GT:AD:DP:GQ:PL:SB 0/1:5,1,0:6:3:3,0,205,31,208,239:0,5,0,1 +chrX 1587633 . CTACCT *,C, 202.11 . AS_QUALapprox=|0|657|0;AS_VarDP=0|1|5|0;DP=20;QUALapprox=675;RAW_GT_COUNT=0,0,1;RAW_MQandDP=69129,20;VarDP=6 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|2:0,1,5,0:6:18:0|1:1587633_CTACCT_*:675,246,199,65,0,18,497,243,68,460:1587633:0,0,0,6 +chrX 1587643 . TTCCCCTCCCCTCCCCTCCCCTCCCTTCCCCTCCTCTCCCTTCCCTTCCCCTCCCCTCCCCTCCCCTCCCTTCCCCTCCCTTCCCCTCCCCTCCTCTCCCCTCCCTTCCCC *,T, 202.11 . AS_QUALapprox=|0|657|0;AS_VarDP=0|1|5|0;DP=22;QUALapprox=675;RAW_GT_COUNT=0,0,1;RAW_MQandDP=73305,22;VarDP=6 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|2:0,1,5,0:6:18:0|1:1587633_CTACCT_*:675,246,199,65,0,18,497,243,68,460:1587633:0,0,0,6 +chrX 1587754 . T . . END=1589244 GT:DP:GQ:MIN_DP:PL 0/0:3:0:1:0,0,0 +chrX 1589245 . C . . END=1589245 GT:DP:GQ:MIN_DP:PL 0/0:8:24:8:0,24,268 +chrX 1589246 . T . . END=1589246 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,199 +chrX 1589247 . C . . END=1589248 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,223 +chrX 1589249 . A . . END=1589250 GT:DP:GQ:MIN_DP:PL 0/0:7:0:7:0,0,74 +chrX 1589251 . T . . END=1589251 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,315 +chrX 1589252 . C . . END=1589252 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,199 +chrX 1589253 . C . . END=1589255 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,223 +chrX 1589256 . T . . END=1589256 GT:DP:GQ:MIN_DP:PL 0/0:9:2:9:0,2,213 +chrX 1589257 . C . . END=1589259 GT:DP:GQ:MIN_DP:PL 0/0:9:24:9:0,24,360 +chrX 1589260 . T . . END=1589260 GT:DP:GQ:MIN_DP:PL 0/0:9:2:9:0,2,233 +chrX 1589261 . T . . END=1589265 GT:DP:GQ:MIN_DP:PL 0/0:11:27:9:0,27,303 +chrX 1589266 . T . . END=1589266 GT:DP:GQ:MIN_DP:PL 0/0:12:0:12:0,0,288 +chrX 1589267 . C . . END=1590282 GT:DP:GQ:MIN_DP:PL 0/0:19:22:12:0,22,417 +chrX 1590283 . A C, 598.64 . AS_QUALapprox=|606|0;AS_VarDP=29|23|0;BaseQRankSum=1.602;DP=53;MQRankSum=0.000;QUALapprox=606;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=-2.110;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:29,23,0:52:99:606,0,772,694,841,1534:14,15,14,9 +chrX 1590284 . C . . END=1590886 GT:DP:GQ:MIN_DP:PL 0/0:74:99:74:0,120,1800 +chrX 1590887 . A C, 1198.64 . AS_QUALapprox=|1206|0;AS_VarDP=35|32|0;BaseQRankSum=-0.361;DP=68;MQRankSum=0.000;QUALapprox=1206;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=1.771;VarDP=67 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:35,32,0:67:99:0|1:1590887_A_C:1206,0,1314,1312,1410,2722:1590887:21,14,19,13 +chrX 1590888 . A . . END=1590893 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 1590894 . A G, 1255.64 . AS_QUALapprox=|1263|0;AS_VarDP=34|34|0;BaseQRankSum=-1.887;DP=70;MQRankSum=0.000;QUALapprox=1263;RAW_GT_COUNT=0,1,0;RAW_MQandDP=252000,70;ReadPosRankSum=1.225;VarDP=68 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:34,34,0:68:99:0|1:1590887_A_C:1263,0,1278,1365,1380,2745:1590887:19,15,19,15 +chrX 1590895 . T . . END=1591034 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 1591035 . A C, 753.64 . AS_QUALapprox=|761|0;AS_VarDP=29|30|0;BaseQRankSum=-1.116;DP=60;MQRankSum=0.000;QUALapprox=761;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=0.478;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:29,30,0:59:99:761,0,802,848,891,1739:10,19,13,17 +chrX 1591036 . T . . END=1591175 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1591176 . T G, 739.64 . AS_QUALapprox=|747|0;AS_VarDP=31|29|0;BaseQRankSum=-1.674;DP=62;MQRankSum=0.000;QUALapprox=747;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=-1.924;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:31,29,0:60:99:747,0,852,840,940,1779:13,18,15,14 +chrX 1591177 . A . . END=1591873 GT:DP:GQ:MIN_DP:PL 0/0:61:64:61:0,64,1289 +chrX 1591874 . C T, 320.64 . AS_QUALapprox=|328|0;AS_VarDP=23|15|0;BaseQRankSum=-1.279;DP=43;MQRankSum=0.000;QUALapprox=328;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154800,43;ReadPosRankSum=-0.598;VarDP=38 GT:AD:DP:GQ:PL:SB 0/1:23,15,0:38:99:328,0,627,397,671,1067:15,8,10,5 +chrX 1591875 . C . . END=1591876 GT:DP:GQ:MIN_DP:PL 0/0:43:72:43:0,72,1259 +chrX 1591877 . C . . END=1591877 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,1046 +chrX 1591878 . G . . END=1591879 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 1591880 . A . . END=1591880 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,977 +chrX 1591881 . G . . END=1591882 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,120,1800 +chrX 1591883 . T . . END=1591883 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,941 +chrX 1591884 . G . . END=1591885 GT:DP:GQ:MIN_DP:PL 0/0:41:51:41:0,51,1121 +chrX 1591886 . C . . END=1591886 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,823 +chrX 1591887 . G . . END=1591891 GT:DP:GQ:MIN_DP:PL 0/0:45:54:45:0,54,1050 +chrX 1591892 . T . . END=1591892 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,1028 +chrX 1591893 . G . . END=1591897 GT:DP:GQ:MIN_DP:PL 0/0:45:76:45:0,76,1149 +chrX 1591898 . T . . END=1591898 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,923 +chrX 1591899 . G . . END=1591904 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,105,1470 +chrX 1591905 . C . . END=1591905 GT:DP:GQ:MIN_DP:PL 0/0:34:3:34:0,3,904 +chrX 1591906 . G . . END=1591906 GT:DP:GQ:MIN_DP:PL 0/0:39:92:39:0,92,1216 +chrX 1591907 . T . . END=1591907 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,778 +chrX 1591908 . G . . END=1591917 GT:DP:GQ:MIN_DP:PL 0/0:36:44:36:0,44,993 +chrX 1591918 . C . . END=1591918 GT:DP:GQ:MIN_DP:PL 0/0:33:1:33:0,1,850 +chrX 1591919 . G . . END=1591925 GT:DP:GQ:MIN_DP:PL 0/0:41:87:41:0,87,968 +chrX 1591926 . T . . END=1591926 GT:DP:GQ:MIN_DP:PL 0/0:36:19:36:0,19,933 +chrX 1591927 . G . . END=1591945 GT:DP:GQ:MIN_DP:PL 0/0:35:52:35:0,52,977 +chrX 1591946 . C . . END=1591946 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,699 +chrX 1591947 . G . . END=1591952 GT:DP:GQ:MIN_DP:PL 0/0:41:40:41:0,40,951 +chrX 1591953 . A . . END=1591953 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,858 +chrX 1591954 . T . . END=1591954 GT:DP:GQ:MIN_DP:PL 0/0:30:55:30:0,55,883 +chrX 1591955 . C . . END=1591955 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,645 +chrX 1591956 . G . . END=1591961 GT:DP:GQ:MIN_DP:PL 0/0:45:55:45:0,55,915 +chrX 1591962 . T . . END=1591962 GT:DP:GQ:MIN_DP:PL 0/0:42:15:42:0,15,966 +chrX 1591963 . G . . END=1591966 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 1591967 . A . . END=1591967 GT:DP:GQ:MIN_DP:PL 0/0:46:2:46:0,2,1045 +chrX 1591968 . G . . END=1592271 GT:DP:GQ:MIN_DP:PL 0/0:53:39:46:0,39,1061 +chrX 1592272 . A G, 1079.64 . AS_QUALapprox=|1087|0;AS_VarDP=21|40|0;BaseQRankSum=-0.664;DP=63;MQRankSum=0.000;QUALapprox=1087;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=0.569;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:21,40,0:61:99:1087,0,477,1149,597,1746:10,11,20,20 +chrX 1592273 . C . . END=1594127 GT:DP:GQ:MIN_DP:PL 0/0:62:86:62:0,86,1416 +chrX 1594128 . C T, 995.64 . AS_QUALapprox=|1003|0;AS_VarDP=41|38|0;BaseQRankSum=1.607;DP=80;MQRankSum=0.000;QUALapprox=1003;RAW_GT_COUNT=0,1,0;RAW_MQandDP=288000,80;ReadPosRankSum=-1.016;VarDP=79 GT:AD:DP:GQ:PL:SB 0/1:41,38,0:79:99:1003,0,1008,1126,1122,2248:14,27,23,15 +chrX 1594129 . G . . END=1594274 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 1594275 . C T, 743.64 . AS_QUALapprox=|751|0;AS_VarDP=23|29|0;BaseQRankSum=-3.090;DP=54;MQRankSum=0.000;QUALapprox=751;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=0.369;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:23,29,0:52:99:751,0,638,820,726,1546:14,9,12,17 +chrX 1594276 . C . . END=1595229 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,115,1527 +chrX 1595230 . TGGGTCTGCACCGGACATGAGTGGTGAGC T, 1019.60 . AS_QUALapprox=|1027|0;AS_VarDP=45|28|0;BaseQRankSum=-0.531;DP=75;MQRankSum=0.000;QUALapprox=1027;RAW_GT_COUNT=0,1,0;RAW_MQandDP=270000,75;ReadPosRankSum=-1.583;VarDP=73 GT:AD:DP:GQ:PL:SB 0/1:45,28,0:73:99:1027,0,1805,1162,1890,3052:22,23,15,13 +chrX 1595259 . G . . END=1595719 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,107,1800 +chrX 1595720 . C T, 642.64 . AS_QUALapprox=|650|0;AS_VarDP=38|25|0;BaseQRankSum=1.186;DP=67;MQRankSum=0.000;QUALapprox=650;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=0.141;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:38,25,0:63:99:650,0,1026,764,1102,1866:16,22,9,16 +chrX 1595721 . C . . END=1596225 GT:DP:GQ:MIN_DP:PL 0/0:62:43:62:0,43,1107 +chrX 1596226 . T TA, 169.60 . AS_QUALapprox=|177|0;AS_VarDP=16|12|0;BaseQRankSum=0.027;DP=43;MQRankSum=0.000;QUALapprox=177;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154800,43;ReadPosRankSum=-1.602;VarDP=28 GT:AD:DP:GQ:PL:SB 0/1:16,12,0:28:99:177,0,289,225,325,550:7,9,2,10 +chrX 1596227 . A . . END=1596458 GT:DP:GQ:MIN_DP:PL 0/0:50:45:50:0,45,1090 +chrX 1596459 . A . . END=1596459 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,997 +chrX 1596460 . C . . END=1596462 GT:DP:GQ:MIN_DP:PL 0/0:44:94:44:0,94,1275 +chrX 1596463 . T . . END=1596463 GT:DP:GQ:MIN_DP:PL 0/0:40:11:40:0,11,1002 +chrX 1596464 . C . . END=1596473 GT:DP:GQ:MIN_DP:PL 0/0:36:70:36:0,70,996 +chrX 1596474 . T C, 197.64 . AS_QUALapprox=|205|0;AS_VarDP=19|7|0;BaseQRankSum=1.465;DP=27;MQRankSum=0.378;QUALapprox=205;RAW_GT_COUNT=0,1,0;RAW_MQandDP=84733,27;ReadPosRankSum=-1.120;VarDP=26 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:19,7,0:26:99:0|1:1596474_T_C:205,0,736,262,757,1019:1596474:7,12,3,4 +chrX 1596475 . G . . END=1596477 GT:DP:GQ:MIN_DP:PL 0/0:21:51:21:0,51,765 +chrX 1596478 . T A, 172.64 . AS_QUALapprox=|180|0;AS_VarDP=17|6|0;BaseQRankSum=0.173;DP=24;MQRankSum=0.340;QUALapprox=180;RAW_GT_COUNT=0,1,0;RAW_MQandDP=73933,24;ReadPosRankSum=-1.294;VarDP=23 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:17,6,0:23:99:0|1:1596474_T_C:180,0,676,231,694,925:1596474:7,10,2,4 +chrX 1596479 . T . . END=1596486 GT:DP:GQ:MIN_DP:PL 0/0:21:39:20:0,39,585 +chrX 1596487 . C T, 95.64 . AS_QUALapprox=|103|0;AS_VarDP=18|4|0;BaseQRankSum=0.410;DP=23;MQRankSum=-0.116;QUALapprox=103;RAW_GT_COUNT=0,1,0;RAW_MQandDP=70333,23;ReadPosRankSum=-0.553;VarDP=22 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:18,4,0:22:99:0|1:1596474_T_C:103,0,702,157,714,871:1596474:7,11,2,2 +chrX 1596488 . T . . END=1596491 GT:DP:GQ:MIN_DP:PL 0/0:32:60:32:0,60,900 +chrX 1596492 . C . . END=1596492 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,645 +chrX 1596493 . C . . END=1596496 GT:DP:GQ:MIN_DP:PL 0/0:26:57:26:0,57,855 +chrX 1596497 . A . . END=1596497 GT:DP:GQ:MIN_DP:PL 0/0:22:12:22:0,12,485 +chrX 1596498 . T . . END=1596524 GT:DP:GQ:MIN_DP:PL 0/0:21:25:20:0,25,547 +chrX 1596525 . A . . END=1596525 GT:DP:GQ:MIN_DP:PL 0/0:25:0:25:0,0,620 +chrX 1596526 . T . . END=1596533 GT:DP:GQ:MIN_DP:PL 0/0:27:53:27:0,53,814 +chrX 1596534 . T . . END=1596534 GT:DP:GQ:MIN_DP:PL 0/0:27:0:27:0,0,690 +chrX 1596535 . T . . END=1596538 GT:DP:GQ:MIN_DP:PL 0/0:26:72:26:0,72,1080 +chrX 1596539 . C . . END=1596539 GT:DP:GQ:MIN_DP:PL 0/0:26:0:26:0,0,199 +chrX 1596540 . C . . END=1596543 GT:DP:GQ:MIN_DP:PL 0/0:26:72:26:0,72,1080 +chrX 1596544 . A . . END=1596544 GT:DP:GQ:MIN_DP:PL 0/0:27:11:27:0,11,729 +chrX 1596545 . T . . END=1596546 GT:DP:GQ:MIN_DP:PL 0/0:27:32:26:0,32,749 +chrX 1596547 . C . . END=1596547 GT:DP:GQ:MIN_DP:PL 0/0:26:0:26:0,0,229 +chrX 1596548 . C . . END=1596548 GT:DP:GQ:MIN_DP:PL 0/0:27:69:27:0,69,1035 +chrX 1596549 . T . . END=1596549 GT:DP:GQ:MIN_DP:PL 0/0:25:1:25:0,1,691 +chrX 1596550 . C . . END=1596618 GT:DP:GQ:MIN_DP:PL 0/0:23:22:19:0,22,530 +chrX 1596619 . T . . END=1596619 GT:DP:GQ:MIN_DP:PL 0/0:18:19:18:0,19,556 +chrX 1596620 . T . . END=1596627 GT:DP:GQ:MIN_DP:PL 0/0:17:26:17:0,26,511 +chrX 1596628 . C . . END=1596630 GT:DP:GQ:MIN_DP:PL 0/0:18:16:18:0,16,511 +chrX 1596631 . C . . END=1596631 GT:DP:GQ:MIN_DP:PL 0/0:18:48:18:0,48,720 +chrX 1596632 . T . . END=1596635 GT:DP:GQ:MIN_DP:PL 0/0:17:13:17:0,13,477 +chrX 1596636 . C . . END=1596637 GT:DP:GQ:MIN_DP:PL 0/0:16:45:16:0,45,675 +chrX 1596638 . A . . END=1596639 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,327 +chrX 1596640 . C . . END=1596640 GT:DP:GQ:MIN_DP:PL 0/0:16:45:16:0,45,675 +chrX 1596641 . C . . END=1596643 GT:DP:GQ:MIN_DP:PL 0/0:18:0:18:0,0,293 +chrX 1596644 . C . . END=1596644 GT:DP:GQ:MIN_DP:PL 0/0:19:54:19:0,54,810 +chrX 1596645 . C . . END=1596648 GT:DP:GQ:MIN_DP:PL 0/0:19:0:19:0,0,272 +chrX 1596649 . C . . END=1596679 GT:DP:GQ:MIN_DP:PL 0/0:24:34:21:0,34,600 +chrX 1596680 . C . . END=1596680 GT:DP:GQ:MIN_DP:PL 0/0:25:0:25:0,0,242 +chrX 1596681 . C . . END=1596693 GT:DP:GQ:MIN_DP:PL 0/0:24:37:24:0,37,576 +chrX 1596694 . A . . END=1596694 GT:DP:GQ:MIN_DP:PL 0/0:20:0:20:0,0,455 +chrX 1596695 . C . . END=1596726 GT:DP:GQ:MIN_DP:PL 0/0:25:34:23:0,34,680 +chrX 1596727 . T . . END=1596727 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,302 +chrX 1596728 . C . . END=1596731 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1067 +chrX 1596732 . G . . END=1596732 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,161 +chrX 1596733 . T . . END=1596748 GT:DP:GQ:MIN_DP:PL 0/0:33:47:33:0,47,815 +chrX 1596749 . A . . END=1596750 GT:DP:GQ:MIN_DP:PL 0/0:31:3:31:0,3,714 +chrX 1596751 . T . . END=1596755 GT:DP:GQ:MIN_DP:PL 0/0:32:36:32:0,36,862 +chrX 1596756 . T . . END=1596756 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,485 +chrX 1596757 . G . . END=1596759 GT:DP:GQ:MIN_DP:PL 0/0:31:30:30:0,30,783 +chrX 1596760 . T . . END=1596760 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,505 +chrX 1596761 . T . . END=1596777 GT:DP:GQ:MIN_DP:PL 0/0:37:62:37:0,62,881 +chrX 1596778 . T . . END=1596778 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,783 +chrX 1596779 . T . . END=1596780 GT:DP:GQ:MIN_DP:PL 0/0:37:58:37:0,58,1021 +chrX 1596781 . C . . END=1596781 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,943 +chrX 1596782 . T . . END=1596787 GT:DP:GQ:MIN_DP:PL 0/0:37:73:37:0,73,1057 +chrX 1596788 . A . . END=1596789 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,777 +chrX 1596790 . C . . END=1596816 GT:DP:GQ:MIN_DP:PL 0/0:39:48:39:0,48,1012 +chrX 1596817 . C . . END=1596817 GT:DP:GQ:MIN_DP:PL 0/0:36:14:36:0,14,892 +chrX 1596818 . G . . END=1596838 GT:DP:GQ:MIN_DP:PL 0/0:40:29:32:0,29,893 +chrX 1596839 . C . . END=1596842 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,817 +chrX 1596843 . C . . END=1596844 GT:DP:GQ:MIN_DP:PL 0/0:40:96:40:0,96,1440 +chrX 1596845 . T . . END=1596846 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,919 +chrX 1596847 . C . . END=1596847 GT:DP:GQ:MIN_DP:PL 0/0:38:93:38:0,93,1395 +chrX 1596848 . T . . END=1596850 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,590 +chrX 1596851 . C . . END=1596851 GT:DP:GQ:MIN_DP:PL 0/0:38:45:38:0,45,1062 +chrX 1596852 . G . . END=1596855 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,337 +chrX 1596856 . C . . END=1596886 GT:DP:GQ:MIN_DP:PL 0/0:43:70:43:0,70,1244 +chrX 1596887 . T . . END=1596887 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1275 +chrX 1596888 . C . . END=1596891 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 1596892 . G A, 672.64 . AS_QUALapprox=|680|0;AS_VarDP=18|23|0;BaseQRankSum=2.767;DP=47;MQRankSum=-0.449;QUALapprox=680;RAW_GT_COUNT=0,1,0;RAW_MQandDP=153295,47;ReadPosRankSum=-1.578;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:18,23,0:41:99:680,0,405,733,474,1207:12,6,15,8 +chrX 1596893 . T . . END=1596919 GT:DP:GQ:MIN_DP:PL 0/0:46:58:46:0,58,1271 +chrX 1596920 . A . . END=1596920 GT:DP:GQ:MIN_DP:PL 0/0:56:0:56:0,0,1289 +chrX 1596921 . T . . END=1597506 GT:DP:GQ:MIN_DP:PL 0/0:61:41:61:0,41,1490 +chrX 1597507 . A G, 859.64 . AS_QUALapprox=|867|0;AS_VarDP=22|30|0;BaseQRankSum=0.341;DP=53;MQRankSum=0.000;QUALapprox=867;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=-0.686;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:22,30,0:52:99:867,0,588,933,679,1611:15,7,13,17 +chrX 1597508 . C . . END=1598377 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,105,1368 +chrX 1598378 . C G, 740.64 . AS_QUALapprox=|748|0;AS_VarDP=32|28|0;BaseQRankSum=-0.199;DP=62;MQRankSum=0.000;QUALapprox=748;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=-0.534;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:32,28,0:60:99:748,0,902,844,986,1830:15,17,15,13 +chrX 1598379 . C . . END=1599114 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,106,1704 +chrX 1599115 . T G, 1881.06 . AS_QUALapprox=|1895|0;AS_VarDP=0|56|0;DP=58;QUALapprox=1895;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1895,168,0,1895,168,1895:0,0,33,23 +chrX 1599116 . T . . END=1599466 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 1599467 . G A, 746.64 . AS_QUALapprox=|754|0;AS_VarDP=31|29|0;BaseQRankSum=1.278;DP=62;MQRankSum=0.000;QUALapprox=754;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=0.733;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:31,29,0:60:99:754,0,758,846,845,1690:18,13,7,22 +chrX 1599468 . C . . END=1599753 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 1599754 . G A, 599.64 . AS_QUALapprox=|607|0;AS_VarDP=28|23|0;BaseQRankSum=0.989;DP=52;MQRankSum=0.000;QUALapprox=607;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=0.350;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:28,23,0:51:99:607,0,725,690,794,1484:12,16,10,13 +chrX 1599755 . G . . END=1601003 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 1601004 . C G, 746.64 . AS_QUALapprox=|754|0;AS_VarDP=45|29|0;BaseQRankSum=0.880;DP=74;MQRankSum=0.000;QUALapprox=754;RAW_GT_COUNT=0,1,0;RAW_MQandDP=266400,74;ReadPosRankSum=-0.814;VarDP=74 GT:AD:DP:GQ:PL:SB 0/1:45,29,0:74:99:754,0,1261,889,1349,2238:22,23,12,17 +chrX 1601005 . C . . END=1601729 GT:DP:GQ:MIN_DP:PL 0/0:73:99:73:0,120,1800 +chrX 1601730 . C T, 880.64 . AS_QUALapprox=|888|0;AS_VarDP=29|32|0;BaseQRankSum=0.911;DP=64;MQRankSum=0.000;QUALapprox=888;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=-0.744;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:29,32,0:61:99:888,0,750,975,846,1821:12,17,15,17 +chrX 1601731 . G . . END=1602821 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,116,1609 +chrX 1602822 . C CT, 454.60 . AS_QUALapprox=|462|0;AS_VarDP=27|25|0;BaseQRankSum=-0.734;DP=66;MQRankSum=-1.813;QUALapprox=462;RAW_GT_COUNT=0,1,0;RAW_MQandDP=232450,66;ReadPosRankSum=-1.218;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:27,25,0:52:99:462,0,568,543,642,1185:13,14,11,14 +chrX 1602823 . T . . END=1602866 GT:DP:GQ:MIN_DP:PL 0/0:66:42:66:0,42,1558 +chrX 1602867 . G C, 866.64 . AS_QUALapprox=|874|0;AS_VarDP=36|35|0;BaseQRankSum=-0.073;DP=72;MQRankSum=-1.425;QUALapprox=874;RAW_GT_COUNT=0,1,0;RAW_MQandDP=258050,72;ReadPosRankSum=-0.736;VarDP=71 GT:AD:DP:GQ:PL:SB 0/1:36,35,0:71:99:874,0,909,982,1013,1995:16,20,13,22 +chrX 1602868 . A . . END=1602896 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1602897 . G A, 1361.64 . AS_QUALapprox=|1369|0;AS_VarDP=34|36|0;BaseQRankSum=0.360;DP=70;MQRankSum=-0.943;QUALapprox=1369;RAW_GT_COUNT=0,1,0;RAW_MQandDP=251881,70;ReadPosRankSum=1.165;VarDP=70 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:34,36,0:70:99:0|1:1602897_G_A:1369,0,1217,1471,1326,2797:1602897:14,20,15,21 +chrX 1602898 . A . . END=1602910 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 1602911 . G A, 1335.64 . AS_QUALapprox=|1343|0;AS_VarDP=32|35|0;BaseQRankSum=1.104;DP=70;MQRankSum=-0.926;QUALapprox=1343;RAW_GT_COUNT=0,1,0;RAW_MQandDP=249122,70;ReadPosRankSum=0.456;VarDP=67 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:32,35,0:67:99:0|1:1602897_G_A:1343,0,1157,1439,1262,2702:1602897:15,17,15,20 +chrX 1602912 . G . . END=1603009 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 1603010 . A G, 592.64 . AS_QUALapprox=|600|0;AS_VarDP=25|22|0;BaseQRankSum=0.719;DP=53;MQRankSum=-1.212;QUALapprox=600;RAW_GT_COUNT=0,1,0;RAW_MQandDP=181577,53;ReadPosRankSum=-0.320;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:25,22,0:47:99:600,0,688,676,754,1429:14,11,10,12 +chrX 1603011 . G . . END=1603024 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 1603025 . T C, 674.64 . AS_QUALapprox=|682|0;AS_VarDP=27|24|0;BaseQRankSum=2.213;DP=52;MQRankSum=-1.195;QUALapprox=682;RAW_GT_COUNT=0,1,0;RAW_MQandDP=177977,52;ReadPosRankSum=-0.632;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:27,24,0:51:99:682,0,706,762,778,1540:16,11,12,12 +chrX 1603026 . A . . END=1603064 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,116,1604 +chrX 1603065 . T C, 633.64 . AS_QUALapprox=|641|0;AS_VarDP=31|25|0;BaseQRankSum=-0.406;DP=57;MQRankSum=-0.803;QUALapprox=641;RAW_GT_COUNT=0,1,0;RAW_MQandDP=200736,57;ReadPosRankSum=0.932;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:31,25,0:56:99:641,0,848,734,923,1657:17,14,11,14 +chrX 1603066 . G . . END=1603091 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 1603092 . T G, 563.64 . AS_QUALapprox=|571|0;AS_VarDP=30|23|0;BaseQRankSum=-0.794;DP=54;MQRankSum=0.000;QUALapprox=571;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=1.050;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:30,23,0:53:99:571,0,838,661,907,1567:15,15,11,12 +chrX 1603093 . A . . END=1603153 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 1603154 . A G, 746.64 . AS_QUALapprox=|754|0;AS_VarDP=40|31|0;BaseQRankSum=-1.216;DP=73;MQRankSum=0.000;QUALapprox=754;RAW_GT_COUNT=0,1,0;RAW_MQandDP=262800,73;ReadPosRankSum=-1.339;VarDP=71 GT:AD:DP:GQ:PL:SB 0/1:40,31,0:71:99:754,0,1118,875,1210,2085:19,21,18,13 +chrX 1603155 . C . . END=1603299 GT:DP:GQ:MIN_DP:PL 0/0:76:99:76:0,120,1800 +chrX 1603300 . A G, 937.64 . AS_QUALapprox=|945|0;AS_VarDP=31|36|0;BaseQRankSum=-0.212;DP=71;MQRankSum=0.000;QUALapprox=945;RAW_GT_COUNT=0,1,0;RAW_MQandDP=255600,71;ReadPosRankSum=-0.811;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:31,36,0:67:99:945,0,792,1038,899,1937:18,13,18,18 +chrX 1603301 . C . . END=1603519 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1714 +chrX 1603520 . G A, 738.64 . AS_QUALapprox=|746|0;AS_VarDP=23|26|0;BaseQRankSum=2.227;DP=53;MQRankSum=-0.458;QUALapprox=746;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187310,53;ReadPosRankSum=-0.451;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:23,26,0:49:99:746,0,577,815,656,1470:10,13,13,13 +chrX 1603521 . T . . END=1603645 GT:DP:GQ:MIN_DP:PL 0/0:50:69:50:0,69,1074 +chrX 1603646 . G T, 524.64 . AS_QUALapprox=|532|0;AS_VarDP=15|20|0;BaseQRankSum=1.695;DP=37;MQRankSum=-2.937;QUALapprox=532;RAW_GT_COUNT=0,1,0;RAW_MQandDP=103361,37;ReadPosRankSum=1.635;VarDP=35 GT:AD:DP:GQ:PL:SB 0/1:15,20,0:35:99:532,0,317,576,377,953:8,7,8,12 +chrX 1603647 . C . . END=1603683 GT:DP:GQ:MIN_DP:PL 0/0:31:39:30:0,39,585 +chrX 1603684 . T . . END=1603688 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,0 +chrX 1603689 . A . . END=1603693 GT:DP:GQ:MIN_DP:PL 0/0:33:51:33:0,51,765 +chrX 1603694 . A . . END=1603694 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,282 +chrX 1603695 . A . . END=1603697 GT:DP:GQ:MIN_DP:PL 0/0:33:57:33:0,57,855 +chrX 1603698 . A . . END=1603698 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,293 +chrX 1603699 . A . . END=1603701 GT:DP:GQ:MIN_DP:PL 0/0:32:51:32:0,51,765 +chrX 1603702 . A . . END=1603702 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,303 +chrX 1603703 . A . . END=1603703 GT:DP:GQ:MIN_DP:PL 0/0:31:48:31:0,48,720 +chrX 1603704 . G . . END=1603711 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,213 +chrX 1603712 . T . . END=1603712 GT:DP:GQ:MIN_DP:PL 0/0:27:51:27:0,51,765 +chrX 1603713 . C . . END=1603716 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,591 +chrX 1603717 . G . . END=1603717 GT:DP:GQ:MIN_DP:PL 0/0:24:63:24:0,63,945 +chrX 1603718 . T . . END=1603718 GT:DP:GQ:MIN_DP:PL 0/0:24:2:24:0,2,624 +chrX 1603719 . C . . END=1603740 GT:DP:GQ:MIN_DP:PL 0/0:22:28:21:0,28,620 +chrX 1603741 . A . . END=1603741 GT:DP:GQ:MIN_DP:PL 0/0:23:10:23:0,10,620 +chrX 1603742 . G . . END=1603979 GT:DP:GQ:MIN_DP:PL 0/0:25:35:20:0,35,605 +chrX 1603980 . T . . END=1603980 GT:DP:GQ:MIN_DP:PL 0/0:36:4:36:0,4,983 +chrX 1603981 . T . . END=1603984 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,102,1530 +chrX 1603985 . T . . END=1603985 GT:DP:GQ:MIN_DP:PL 0/0:37:17:37:0,17,1017 +chrX 1603986 . C . . END=1603986 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,102,1530 +chrX 1603987 . T . . END=1603987 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,958 +chrX 1603988 . G . . END=1603990 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,102,1530 +chrX 1603991 . G . . END=1603991 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,829 +chrX 1603992 . G . . END=1603993 GT:DP:GQ:MIN_DP:PL 0/0:37:75:37:0,75,1112 +chrX 1603994 . C . . END=1603995 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,803 +chrX 1603996 . G . . END=1603998 GT:DP:GQ:MIN_DP:PL 0/0:38:93:38:0,93,1226 +chrX 1603999 . G . . END=1603999 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,844 +chrX 1604000 . T . . END=1604001 GT:DP:GQ:MIN_DP:PL 0/0:40:48:40:0,48,1034 +chrX 1604002 . G . . END=1604002 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,729 +chrX 1604003 . C . . END=1604017 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,106,1251 +chrX 1604018 . A . . END=1604018 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,824 +chrX 1604019 . C . . END=1604019 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 1604020 . G . . END=1604020 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,838 +chrX 1604021 . C . . END=1604063 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1573 +chrX 1604064 . AAAAC A, 37.60 . AS_QUALapprox=|45|0;AS_VarDP=27|3|0;BaseQRankSum=1.037;DP=36;MQRankSum=0.000;QUALapprox=45;RAW_GT_COUNT=0,1,0;RAW_MQandDP=129600,36;ReadPosRankSum=-1.522;VarDP=30 GT:AD:DP:GQ:PL:SB 0/1:27,3,0:30:45:45,0,1124,126,1134,1260:9,18,2,1 +chrX 1604069 . A . . END=1604305 GT:DP:GQ:MIN_DP:PL 0/0:54:81:54:0,81,911 +chrX 1604306 . A G, 788.64 . AS_QUALapprox=|796|0;AS_VarDP=23|30|0;BaseQRankSum=-1.405;DP=56;MQRankSum=0.000;QUALapprox=796;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-1.714;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:23,30,0:53:99:796,0,621,866,710,1576:8,15,15,15 +chrX 1604307 . A . . END=1604639 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,118,1541 +chrX 1604640 . T TTCCC, 845.60 . AS_QUALapprox=|853|0;AS_VarDP=17|25|0;BaseQRankSum=-1.014;DP=53;MQRankSum=0.000;QUALapprox=853;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=0.462;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:17,25,0:42:99:853,0,597,904,672,1576:7,10,13,12 +chrX 1604641 . T . . END=1604912 GT:DP:GQ:MIN_DP:PL 0/0:57:20:45:0,20,1295 +chrX 1604913 . G A, 1020.64 . AS_QUALapprox=|1028|0;AS_VarDP=23|36|0;BaseQRankSum=-0.535;DP=63;MQRankSum=0.000;QUALapprox=1028;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=-0.435;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:23,36,0:59:99:1028,0,598,1097,706,1803:13,10,16,20 +chrX 1604914 . G . . END=1605035 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1605036 . G A, 1033.64 . AS_QUALapprox=|1041|0;AS_VarDP=18|37|0;BaseQRankSum=-0.414;DP=58;MQRankSum=0.000;QUALapprox=1041;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-0.825;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:18,37,0:55:99:1041,0,430,1095,542,1636:9,9,21,16 +chrX 1605037 . A . . END=1605190 GT:DP:GQ:MIN_DP:PL 0/0:55:63:55:0,63,1339 +chrX 1605191 . T C, 398.64 . AS_QUALapprox=|406|0;AS_VarDP=28|18|0;BaseQRankSum=-2.574;DP=49;MQRankSum=0.000;QUALapprox=406;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=0.000;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:28,18,0:46:99:406,0,805,490,859,1349:9,19,8,10 +chrX 1605192 . G . . END=1605237 GT:DP:GQ:MIN_DP:PL 0/0:47:96:47:0,96,1324 +chrX 1605238 . C T, 435.64 . AS_QUALapprox=|443|0;AS_VarDP=29|19|0;BaseQRankSum=-1.352;DP=51;MQRankSum=-1.735;QUALapprox=443;RAW_GT_COUNT=0,1,0;RAW_MQandDP=177245,51;ReadPosRankSum=-0.696;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:29,19,0:48:99:443,0,720,528,777,1305:10,19,10,9 +chrX 1605239 . T . . END=1605988 GT:DP:GQ:MIN_DP:PL 0/0:37:31:32:0,31,763 +chrX 1605989 . C T, 794.64 . AS_QUALapprox=|802|0;AS_VarDP=34|31|0;BaseQRankSum=-1.716;DP=66;MQRankSum=0.000;QUALapprox=802;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=-0.578;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:34,31,0:65:99:802,0,942,904,1035,1939:8,26,12,19 +chrX 1605990 . T . . END=1606017 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,117,1755 +chrX 1606018 . T A, 728.64 . AS_QUALapprox=|736|0;AS_VarDP=29|28|0;BaseQRankSum=-2.597;DP=58;MQRankSum=0.000;QUALapprox=736;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=1.158;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:29,28,0:57:99:736,0,828,823,913,1736:12,17,14,14 +chrX 1606019 . A . . END=1606108 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 1606109 . G A, 781.64 . AS_QUALapprox=|789|0;AS_VarDP=18|30|0;BaseQRankSum=0.336;DP=52;MQRankSum=0.000;QUALapprox=789;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=-0.639;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:18,30,0:48:99:789,0,422,843,511,1354:12,6,16,14 +chrX 1606110 . T . . END=1606240 GT:DP:GQ:MIN_DP:PL 0/0:59:98:59:0,98,1497 +chrX 1606241 . C G, 923.64 . AS_QUALapprox=|931|0;AS_VarDP=24|34|0;BaseQRankSum=1.407;DP=60;MQRankSum=0.000;QUALapprox=931;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=0.750;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:24,34,0:58:99:931,0,550,1002,652,1654:8,16,16,18 +chrX 1606242 . G . . END=1606815 GT:DP:GQ:MIN_DP:PL 0/0:63:88:63:0,88,1518 +chrX 1606816 . T TA, 274.60 . AS_QUALapprox=|282|0;AS_VarDP=22|16|0;BaseQRankSum=1.019;DP=54;MQRankSum=0.000;QUALapprox=282;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=0.015;VarDP=38 GT:AD:DP:GQ:PL:SB 0/1:22,16,0:38:99:282,0,453,348,501,849:11,11,11,5 +chrX 1606817 . A . . END=1606939 GT:DP:GQ:MIN_DP:PL 0/0:56:40:56:0,40,1464 +chrX 1606940 . C G, 745.64 . AS_QUALapprox=|753|0;AS_VarDP=30|28|0;BaseQRankSum=0.904;DP=59;MQRankSum=-1.001;QUALapprox=753;RAW_GT_COUNT=0,1,0;RAW_MQandDP=211716,59;ReadPosRankSum=0.210;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:30,28,0:58:99:753,0,809,843,893,1736:13,17,15,13 +chrX 1606941 . C . . END=1606984 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1606985 . C T, 1001.64 . AS_QUALapprox=|1009|0;AS_VarDP=26|27|0;BaseQRankSum=1.659;DP=57;MQRankSum=-0.944;QUALapprox=1009;RAW_GT_COUNT=0,1,0;RAW_MQandDP=203200,57;ReadPosRankSum=-0.019;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,27,0:53:99:0|1:1606985_C_T:1009,0,988,1087,1069,2156:1606985:16,10,14,13 +chrX 1606986 . G . . END=1606986 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 1606987 . T C, 1001.64 . AS_QUALapprox=|1009|0;AS_VarDP=26|27|0;BaseQRankSum=0.671;DP=54;MQRankSum=-0.944;QUALapprox=1009;RAW_GT_COUNT=0,1,0;RAW_MQandDP=192400,54;ReadPosRankSum=0.462;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,27,0:53:99:0|1:1606985_C_T:1009,0,988,1087,1069,2156:1606985:16,10,14,13 +chrX 1606988 . G . . END=1607626 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,104,1283 +chrX 1607627 . G C, 2199.06 . AS_QUALapprox=|2213|0;AS_VarDP=0|67|0;DP=72;QUALapprox=2213;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;VarDP=67 GT:AD:DP:GQ:PL:SB 1/1:0,67,0:67:99:2213,201,0,2213,201,2213:0,0,28,39 +chrX 1607628 . T . . END=1607878 GT:DP:GQ:MIN_DP:PL 0/0:65:37:64:0,37,1668 +chrX 1607879 . G A, 2785.06 . AS_QUALapprox=|2799|0;AS_VarDP=0|65|0;DP=68;QUALapprox=2799;RAW_GT_COUNT=0,0,1;RAW_MQandDP=177247,68;VarDP=65 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,65,0:65:99:0|1:1607879_G_A:2799,196,0,2799,196,2799:1607879:0,0,39,26 +chrX 1607880 . T . . END=1607900 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 1607901 . G T, 2805.06 . AS_QUALapprox=|2819|0;AS_VarDP=0|66|0;DP=68;QUALapprox=2819;RAW_GT_COUNT=0,0,1;RAW_MQandDP=159247,68;VarDP=66 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,66,0:66:99:0|1:1607879_G_A:2819,198,0,2819,198,2819:1607879:0,0,42,24 +chrX 1607902 . G . . END=1607945 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1607946 . C T, 2671.06 . AS_QUALapprox=|2685|0;AS_VarDP=0|62|0;DP=65;QUALapprox=2685;RAW_GT_COUNT=0,0,1;RAW_MQandDP=137075,65;VarDP=62 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,62,0:62:99:0|1:1607946_C_T:2685,187,0,2685,187,2685:1607946:0,0,42,20 +chrX 1607947 . T . . END=1607961 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 1607962 . A G, 3033.06 . AS_QUALapprox=|3047|0;AS_VarDP=0|73|0;DP=76;QUALapprox=3047;RAW_GT_COUNT=0,0,1;RAW_MQandDP=178012,76;VarDP=73 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,73,0:73:99:0|1:1607946_C_T:3047,220,0,3047,220,3047:1607946:0,0,46,27 +chrX 1607963 . C . . END=1608007 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,120,1800 +chrX 1608008 . C T, 3569.06 . AS_QUALapprox=|3583|0;AS_VarDP=0|81|0;DP=82;QUALapprox=3583;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230668,82;VarDP=81 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,81,0:81:99:0|1:1608008_C_T:3583,244,0,3583,244,3583:1608008:0,0,39,42 +chrX 1608009 . G . . END=1608019 GT:DP:GQ:MIN_DP:PL 0/0:81:99:81:0,120,1800 +chrX 1608020 . G A, 3535.06 . AS_QUALapprox=|3549|0;AS_VarDP=0|80|0;DP=81;QUALapprox=3549;RAW_GT_COUNT=0,0,1;RAW_MQandDP=233068,81;VarDP=80 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,80,0:80:99:0|1:1608008_C_T:3549,241,0,3549,241,3549:1608008:0,0,38,42 +chrX 1608021 . G . . END=1608050 GT:DP:GQ:MIN_DP:PL 0/0:75:99:75:0,120,1800 +chrX 1608051 . C T, 2433.06 . AS_QUALapprox=|2447|0;AS_VarDP=0|73|0;DP=77;QUALapprox=2447;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252483,77;VarDP=73 GT:AD:DP:GQ:PL:SB 1/1:0,73,0:73:99:2447,220,0,2447,220,2447:0,0,32,41 +chrX 1608052 . G . . END=1608109 GT:DP:GQ:MIN_DP:PL 0/0:90:99:90:0,120,1800 +chrX 1608110 . A G, 2719.06 . AS_QUALapprox=|2733|0;AS_VarDP=0|83|0;DP=87;QUALapprox=2733;RAW_GT_COUNT=0,0,1;RAW_MQandDP=297954,87;VarDP=83 GT:AD:DP:GQ:PL:SB 1/1:0,83,0:83:99:2733,249,0,2733,249,2733:0,0,30,53 +chrX 1608111 . T . . END=1608279 GT:DP:GQ:MIN_DP:PL 0/0:76:99:76:0,120,1800 +chrX 1608280 . C A, 1126.64 . AS_QUALapprox=|1134|0;AS_VarDP=35|39|0;BaseQRankSum=2.169;DP=78;MQRankSum=0.000;QUALapprox=1134;RAW_GT_COUNT=0,1,0;RAW_MQandDP=280800,78;ReadPosRankSum=-1.300;VarDP=74 GT:AD:DP:GQ:PL:SB 0/1:35,39,0:74:99:1134,0,937,1239,1055,2293:21,14,19,20 +chrX 1608281 . A . . END=1608318 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 1608319 . A G, 2227.06 . AS_QUALapprox=|2241|0;AS_VarDP=0|73|0;DP=73;QUALapprox=2241;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;VarDP=73 GT:AD:DP:GQ:PL:SB 1/1:0,73,0:73:99:2241,217,0,2241,217,2241:0,0,34,39 +chrX 1608320 . T . . END=1608431 GT:DP:GQ:MIN_DP:PL 0/0:76:99:76:0,120,1800 +chrX 1608432 . A G, 1950.06 . AS_QUALapprox=|1964|0;AS_VarDP=1|64|0;BaseQRankSum=-0.507;DP=68;MQRankSum=0.000;QUALapprox=1964;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;ReadPosRankSum=1.520;VarDP=65 GT:AD:DP:GQ:PL:SB 1/1:1,64,0:65:99:1964,159,0,1967,190,1998:1,0,27,37 +chrX 1608433 . A . . END=1608445 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 1608446 . T C, 2495.06 . AS_QUALapprox=|2509|0;AS_VarDP=0|65|0;DP=68;QUALapprox=2509;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;VarDP=65 GT:AD:DP:GQ:PL:SB 1/1:0,65,0:65:99:2509,195,0,2509,195,2509:0,0,29,36 +chrX 1608447 . G . . END=1608454 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 1608455 . G T, 1032.64 . AS_QUALapprox=|1040|0;AS_VarDP=28|36|0;BaseQRankSum=3.083;DP=67;MQRankSum=0.000;QUALapprox=1040;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=1.320;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:28,36,0:64:99:1040,0,651,1123,759,1882:12,16,17,19 +chrX 1608456 . C . . END=1608471 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 1608472 . C T, 2218.06 . AS_QUALapprox=|2232|0;AS_VarDP=0|66|0;DP=70;QUALapprox=2232;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;VarDP=66 GT:AD:DP:GQ:PL:SB 1/1:0,66,0:66:99:2232,199,0,2232,199,2232:0,0,33,33 +chrX 1608473 . T . . END=1608576 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 1608577 . A G, 2282.06 . AS_QUALapprox=|2296|0;AS_VarDP=0|74|0;DP=75;QUALapprox=2296;RAW_GT_COUNT=0,0,1;RAW_MQandDP=270000,75;VarDP=74 GT:AD:DP:GQ:PL:SB 1/1:0,74,0:74:99:2296,222,0,2296,222,2296:0,0,32,42 +chrX 1608578 . C . . END=1608618 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 1608619 . G A, 833.64 . AS_QUALapprox=|841|0;AS_VarDP=38|32|0;BaseQRankSum=0.317;DP=71;MQRankSum=0.000;QUALapprox=841;RAW_GT_COUNT=0,1,0;RAW_MQandDP=255600,71;ReadPosRankSum=0.165;VarDP=70 GT:AD:DP:GQ:PL:SB 0/1:38,32,0:70:99:841,0,957,954,1053,2007:24,14,9,23 +chrX 1608620 . G . . END=1608725 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 1608726 . TTGTCCAGGC T, 2188.03 . AS_QUALapprox=|2202|0;AS_VarDP=0|49|0;DP=56;QUALapprox=2202;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:2202,148,0,2202,148,2202:0,0,30,19 +chrX 1608736 . T . . END=1608757 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 1608758 . C T, 398.64 . AS_QUALapprox=|406|0;AS_VarDP=34|16|0;BaseQRankSum=1.621;DP=53;MQRankSum=0.000;QUALapprox=406;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=0.302;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:34,16,0:50:99:406,0,981,508,1029,1537:19,15,11,5 +chrX 1608759 . G . . END=1608767 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 1608768 . A G, 1732.06 . AS_QUALapprox=|1746|0;AS_VarDP=0|49|0;DP=53;QUALapprox=1746;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1746,147,0,1746,147,1746:0,0,32,17 +chrX 1608769 . G . . END=1608856 GT:DP:GQ:MIN_DP:PL 0/0:50:63:50:0,63,1310 +chrX 1608857 . A . . END=1608858 GT:DP:GQ:MIN_DP:PL 0/0:40:4:40:0,4,1037 +chrX 1608859 . ACTCCAGGCCACCCCTGACCCTACTCCAGCCAAGC A, 1440.60 . AS_QUALapprox=|1448|0;AS_VarDP=23|37|0;BaseQRankSum=0.588;DP=65;MQRankSum=-0.754;QUALapprox=1448;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230841,65;ReadPosRankSum=-1.506;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:23,37,0:60:99:1448,0,830,1517,943,2460:15,8,16,21 +chrX 1608894 . C . . END=1608909 GT:DP:GQ:MIN_DP:PL 0/0:63:88:63:0,88,1800 +chrX 1608910 . C . . END=1608910 GT:DP:GQ:MIN_DP:PL 0/0:66:0:66:0,0,1768 +chrX 1608911 . C . . END=1609158 GT:DP:GQ:MIN_DP:PL 0/0:73:31:69:0,31,1800 +chrX 1609159 . G A,T, 1793.10 . AS_QUALapprox=|1131|858|0;AS_VarDP=0|34|26|0;DP=60;QUALapprox=1810;RAW_GT_COUNT=0,0,1;RAW_MQandDP=206217,60;VarDP=60 GT:AD:DP:GQ:PL:SB 1/2:0,34,26,0:60:99:1810,781,679,1030,0,952,1810,781,1030,1810:0,0,37,23 +chrX 1609160 . T . . END=1609190 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 1609191 . A G, 851.64 . AS_QUALapprox=|859|0;AS_VarDP=22|31|0;BaseQRankSum=-1.445;DP=55;MQRankSum=-0.875;QUALapprox=859;RAW_GT_COUNT=0,1,0;RAW_MQandDP=185517,55;ReadPosRankSum=-0.460;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:22,31,0:53:99:859,0,581,924,674,1598:14,8,19,12 +chrX 1609192 . A . . END=1609227 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,114,1710 +chrX 1609228 . C T, 610.64 . AS_QUALapprox=|618|0;AS_VarDP=26|23|0;BaseQRankSum=1.825;DP=51;MQRankSum=-2.212;QUALapprox=618;RAW_GT_COUNT=0,1,0;RAW_MQandDP=166478,51;ReadPosRankSum=0.451;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:26,23,0:49:99:618,0,612,695,680,1376:15,11,14,9 +chrX 1609229 . G . . END=1609240 GT:DP:GQ:MIN_DP:PL 0/0:43:91:43:0,91,1198 +chrX 1609241 . C A,CA, 171.60 . AS_QUALapprox=|0|179|0;AS_VarDP=17|2|11|0;BaseQRankSum=-0.052;DP=51;MQRankSum=-1.416;QUALapprox=179;RAW_GT_COUNT=0,1,0;RAW_MQandDP=166943,51;ReadPosRankSum=0.984;VarDP=30 GT:AD:DP:GQ:PL:SB 0/2:17,2,11,0:30:99:179,225,1357,0,377,323,272,1024,424,993:8,9,7,6 +chrX 1609242 . A . . END=1609443 GT:DP:GQ:MIN_DP:PL 0/0:63:93:63:0,93,1637 +chrX 1609444 . T G, 595.64 . AS_QUALapprox=|603|0;AS_VarDP=29|23|0;BaseQRankSum=-0.717;DP=53;MQRankSum=0.000;QUALapprox=603;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=1.060;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:29,23,0:52:99:603,0,821,690,890,1580:11,18,10,13 +chrX 1609445 . A . . END=1609501 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 1609502 . G C, 1671.06 . AS_QUALapprox=|1685|0;AS_VarDP=0|51|0;DP=51;QUALapprox=1685;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1685,152,0,1685,152,1685:0,0,28,23 +chrX 1609503 . C . . END=1609572 GT:DP:GQ:MIN_DP:PL 0/0:54:72:54:0,72,1511 +chrX 1609573 . C . . END=1609573 GT:DP:GQ:MIN_DP:PL 0/0:60:0:60:0,0,0 +chrX 1609574 . C . . END=1609596 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 1609597 . T . . END=1609597 GT:DP:GQ:MIN_DP:PL 0/0:65:0:65:0,0,0 +chrX 1609598 . C . . END=1609621 GT:DP:GQ:MIN_DP:PL 0/0:67:74:67:0,74,1743 +chrX 1609622 . C T, 363.64 . AS_QUALapprox=|371|0;AS_VarDP=44|18|0;BaseQRankSum=1.312;DP=64;MQRankSum=1.792;QUALapprox=371;RAW_GT_COUNT=0,1,0;RAW_MQandDP=220944,64;ReadPosRankSum=0.324;VarDP=62 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:44,18,0:62:99:0|1:1609622_C_T:371,0,1232,501,1286,1787:1609622:22,22,4,14 +chrX 1609623 . G . . END=1609689 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,113,1562 +chrX 1609690 . G A, 271.64 . AS_QUALapprox=|279|0;AS_VarDP=42|21|0;BaseQRankSum=-2.433;DP=70;MQRankSum=0.355;QUALapprox=279;RAW_GT_COUNT=0,1,0;RAW_MQandDP=238482,70;ReadPosRankSum=0.430;VarDP=63 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:42,21,0:63:99:1|0:1609622_C_T:279,0,1101,403,1160,1562:1609622:19,23,14,7 +chrX 1609691 . C . . END=1609724 GT:DP:GQ:MIN_DP:PL 0/0:72:83:72:0,83,1645 +chrX 1609725 . G . . END=1609725 GT:DP:GQ:MIN_DP:PL 0/0:63:0:63:0,0,1431 +chrX 1609726 . C . . END=1609726 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1609727 . T . . END=1609727 GT:DP:GQ:MIN_DP:PL 0/0:60:0:60:0,0,846 +chrX 1609728 . G . . END=1609730 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,114,1800 +chrX 1609731 . C . . END=1609732 GT:DP:GQ:MIN_DP:PL 0/0:55:0:55:0,0,699 +chrX 1609733 . T . . END=1609737 GT:DP:GQ:MIN_DP:PL 0/0:63:73:63:0,73,1615 +chrX 1609738 . C . . END=1609738 GT:DP:GQ:MIN_DP:PL 0/0:57:0:57:0,0,1374 +chrX 1609739 . C . . END=1609751 GT:DP:GQ:MIN_DP:PL 0/0:57:40:57:0,40,1184 +chrX 1609752 . A . . END=1609753 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,193 +chrX 1609754 . C . . END=1609762 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,112,1506 +chrX 1609763 . G . . END=1609765 GT:DP:GQ:MIN_DP:PL 0/0:58:0:58:0,0,446 +chrX 1609766 . C . . END=1609768 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 1609769 . G . . END=1609769 GT:DP:GQ:MIN_DP:PL 0/0:57:0:57:0,0,1155 +chrX 1609770 . C . . END=1609771 GT:DP:GQ:MIN_DP:PL 0/0:69:62:69:0,62,1800 +chrX 1609772 . C . . END=1609773 GT:DP:GQ:MIN_DP:PL 0/0:69:0:69:0,0,1576 +chrX 1609774 . T . . END=1609786 GT:DP:GQ:MIN_DP:PL 0/0:64:66:64:0,66,1524 +chrX 1609787 . G . . END=1609787 GT:DP:GQ:MIN_DP:PL 0/0:50:6:50:0,6,1259 +chrX 1609788 . C . . END=1609871 GT:DP:GQ:MIN_DP:PL 0/0:69:72:69:0,72,1690 +chrX 1609872 . T . . END=1609872 GT:DP:GQ:MIN_DP:PL 0/0:58:11:58:0,11,1490 +chrX 1609873 . C . . END=1609888 GT:DP:GQ:MIN_DP:PL 0/0:57:73:57:0,73,1541 +chrX 1609889 . G A, 203.64 . AS_QUALapprox=|211|0;AS_VarDP=33|8|0;BaseQRankSum=-1.092;DP=42;MQRankSum=-1.969;QUALapprox=211;RAW_GT_COUNT=0,1,0;RAW_MQandDP=149625,42;ReadPosRankSum=-0.099;VarDP=41 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:33,8,0:41:99:0|1:1609889_G_A:211,0,1303,310,1327,1637:1609889:26,7,4,4 +chrX 1609890 . C G, 203.64 . AS_QUALapprox=|211|0;AS_VarDP=33|8|0;BaseQRankSum=-1.762;DP=42;MQRankSum=-1.969;QUALapprox=211;RAW_GT_COUNT=0,1,0;RAW_MQandDP=149625,42;ReadPosRankSum=-0.181;VarDP=41 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:33,8,0:41:99:0|1:1609889_G_A:211,0,1303,310,1327,1637:1609889:26,7,4,4 +chrX 1609891 . C . . END=1609910 GT:DP:GQ:MIN_DP:PL 0/0:51:70:51:0,70,1258 +chrX 1609911 . T . . END=1609912 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,852 +chrX 1609913 . C . . END=1609913 GT:DP:GQ:MIN_DP:PL 0/0:41:54:41:0,54,1186 +chrX 1609914 . T . . END=1609915 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,812 +chrX 1609916 . C . . END=1609916 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,120,1800 +chrX 1609917 . A . . END=1609918 GT:DP:GQ:MIN_DP:PL 0/0:40:10:40:0,10,962 +chrX 1609919 . C . . END=1609920 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,120,1800 +chrX 1609921 . A . . END=1609921 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,948 +chrX 1609922 . A . . END=1609925 GT:DP:GQ:MIN_DP:PL 0/0:46:55:46:0,55,1061 +chrX 1609926 . T . . END=1609926 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,1047 +chrX 1609927 . C . . END=1609928 GT:DP:GQ:MIN_DP:PL 0/0:45:42:45:0,42,1150 +chrX 1609929 . A . . END=1609929 GT:DP:GQ:MIN_DP:PL 0/0:46:19:46:0,19,1211 +chrX 1609930 . G . . END=1609936 GT:DP:GQ:MIN_DP:PL 0/0:43:22:42:0,22,1151 +chrX 1609937 . G . . END=1609937 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,633 +chrX 1609938 . C . . END=1609950 GT:DP:GQ:MIN_DP:PL 0/0:46:73:46:0,73,1208 +chrX 1609951 . A . . END=1609951 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,851 +chrX 1609952 . A . . END=1609952 GT:DP:GQ:MIN_DP:PL 0/0:46:89:46:0,89,1370 +chrX 1609953 . A . . END=1609953 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,978 +chrX 1609954 . C . . END=1609976 GT:DP:GQ:MIN_DP:PL 0/0:43:35:41:0,35,898 +chrX 1609977 . T . . END=1609977 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,899 +chrX 1609978 . C . . END=1610003 GT:DP:GQ:MIN_DP:PL 0/0:40:42:40:0,42,952 +chrX 1610004 . C G, 1247.06 . AS_QUALapprox=|1261|0;AS_VarDP=2|34|0;BaseQRankSum=2.423;DP=38;MQRankSum=-0.360;QUALapprox=1261;RAW_GT_COUNT=0,0,1;RAW_MQandDP=128619,38;ReadPosRankSum=-0.569;VarDP=36 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:2,34,0:36:90:0|1:1610004_C_G:1261,90,0,1266,103,1279:1610004:1,1,22,12 +chrX 1610005 . C . . END=1610016 GT:DP:GQ:MIN_DP:PL 0/0:36:84:36:0,84,986 +chrX 1610017 . CTCCAGCCAAAGCTCCAGGCCGCCCCGCCCCTGCTCCAGCCAACCCTCCAGGCCGCCCCTGCCCCTGT C, 745.60 . AS_QUALapprox=|753|0;AS_VarDP=24|20|0;BaseQRankSum=2.121;DP=47;MQRankSum=-1.915;QUALapprox=753;RAW_GT_COUNT=0,1,0;RAW_MQandDP=161019,47;ReadPosRankSum=-1.440;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,20,0:44:99:0|1:1610004_C_G:753,0,946,825,1008,1833:1610004:13,11,12,8 +chrX 1610085 . T . . END=1610101 GT:DP:GQ:MIN_DP:PL 0/0:34:36:33:0,36,540 +chrX 1610102 . G A, 766.64 . AS_QUALapprox=|774|0;AS_VarDP=17|20|0;BaseQRankSum=-0.243;DP=40;MQRankSum=-1.894;QUALapprox=774;RAW_GT_COUNT=0,1,0;RAW_MQandDP=135244,40;ReadPosRankSum=1.357;VarDP=37 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:17,20,0:37:99:0|1:1610004_C_G:774,0,572,825,635,1460:1610004:9,8,12,8 +chrX 1610103 . T . . END=1610109 GT:DP:GQ:MIN_DP:PL 0/0:47:20:43:0,20,1122 +chrX 1610110 . C . . END=1610110 GT:DP:GQ:MIN_DP:PL 0/0:47:12:47:0,12,1154 +chrX 1610111 . G . . END=1610111 GT:DP:GQ:MIN_DP:PL 0/0:44:28:44:0,28,1191 +chrX 1610112 . T . . END=1610113 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,1191 +chrX 1610114 . C . . END=1610140 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,102,1563 +chrX 1610141 . T . . END=1610141 GT:DP:GQ:MIN_DP:PL 0/0:60:16:60:0,16,1617 +chrX 1610142 . C . . END=1610150 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1610151 . G . . END=1610151 GT:DP:GQ:MIN_DP:PL 0/0:60:12:60:0,12,1618 +chrX 1610152 . T . . END=1610270 GT:DP:GQ:MIN_DP:PL 0/0:58:63:58:0,63,1523 +chrX 1610271 . C T, 927.64 . AS_QUALapprox=|935|0;AS_VarDP=23|34|0;BaseQRankSum=-0.411;DP=58;MQRankSum=0.000;QUALapprox=935;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=0.537;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:23,34,0:57:99:935,0,584,1004,686,1689:11,12,17,17 +chrX 1610272 . T . . END=1610500 GT:DP:GQ:MIN_DP:PL 0/0:55:27:52:0,27,1459 +chrX 1610501 . G . . END=1610501 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1276 +chrX 1610502 . A . . END=1610512 GT:DP:GQ:MIN_DP:PL 0/0:56:23:52:0,23,1420 +chrX 1610513 . G . . END=1610513 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1204 +chrX 1610514 . C . . END=1610523 GT:DP:GQ:MIN_DP:PL 0/0:37:32:35:0,32,992 +chrX 1610524 . G A, 358.04 . AS_QUALapprox=|526|0;AS_VarDP=19|14|0;BaseQRankSum=0.494;DP=36;MQRankSum=0.000;QUALapprox=526;RAW_GT_COUNT=0,1,0;RAW_MQandDP=129600,36;ReadPosRankSum=1.594;VarDP=33 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:19,14,0:33:99:0|1:1610524_G_A:526,0,735,511,777,1276:1610524:14,5,7,4 +chrX 1610525 . C . . END=1610526 GT:DP:GQ:MIN_DP:PL 0/0:36:36:36:0,36,1027 +chrX 1610527 . T C, 400.04 . AS_QUALapprox=|568|0;AS_VarDP=19|15|0;BaseQRankSum=-1.714;DP=37;MQRankSum=-1.192;QUALapprox=568;RAW_GT_COUNT=0,1,0;RAW_MQandDP=130561,37;ReadPosRankSum=0.742;VarDP=34 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:19,15,0:34:99:0|1:1610524_G_A:568,0,732,553,777,1318:1610524:14,5,8,4 +chrX 1610528 . C . . END=1610535 GT:DP:GQ:MIN_DP:PL 0/0:36:20:33:0,20,843 +chrX 1610536 . G A, 412.04 . AS_QUALapprox=|481|0;AS_VarDP=21|13|0;BaseQRankSum=-1.316;DP=40;MQRankSum=-1.260;QUALapprox=481;RAW_GT_COUNT=0,1,0;RAW_MQandDP=140162,40;ReadPosRankSum=0.318;VarDP=34 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,13,0:34:99:0|1:1610524_G_A:481,0,792,519,847,1495:1610524:14,7,8,4 +chrX 1610537 . C . . END=1610557 GT:DP:GQ:MIN_DP:PL 0/0:40:22:36:0,22,1013 +chrX 1610558 . T TCCCCTGCCCCTACTCCAGCCAAGCCCCCAGGTCACTCCTACTCCAGCCAAACCTCCAGGCCACCCCTGCCCCTACTCCAGCTAAGACTCCAGGCCA, 816.60 . AS_QUALapprox=|824|0;AS_VarDP=27|24|0;BaseQRankSum=-0.225;DP=61;MQRankSum=-2.519;QUALapprox=824;RAW_GT_COUNT=0,1,0;RAW_MQandDP=203421,61;ReadPosRankSum=-4.379;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:27,24,0:51:99:824,0,1032,943,1133,2237:14,13,14,10 +chrX 1610559 . C . . END=1610583 GT:DP:GQ:MIN_DP:PL 0/0:52:55:52:0,55,1306 +chrX 1610584 . T . . END=1610584 GT:DP:GQ:MIN_DP:PL 0/0:70:0:70:0,0,1826 +chrX 1610585 . C . . END=1610598 GT:DP:GQ:MIN_DP:PL 0/0:75:99:75:0,120,1800 +chrX 1610599 . A . . END=1610599 GT:DP:GQ:MIN_DP:PL 0/0:71:0:71:0,0,1731 +chrX 1610600 . C . . END=1610993 GT:DP:GQ:MIN_DP:PL 0/0:66:80:66:0,80,1787 +chrX 1610994 . G A, 889.64 . AS_QUALapprox=|897|0;AS_VarDP=35|35|0;BaseQRankSum=-0.088;DP=75;MQRankSum=0.000;QUALapprox=897;RAW_GT_COUNT=0,1,0;RAW_MQandDP=270000,75;ReadPosRankSum=0.558;VarDP=70 GT:AD:DP:GQ:PL:SB 0/1:35,35,0:70:99:897,0,877,1001,982,1983:18,17,20,15 +chrX 1610995 . G . . END=1611316 GT:DP:GQ:MIN_DP:PL 0/0:76:99:76:0,120,1800 +chrX 1611317 . T C, 969.64 . AS_QUALapprox=|977|0;AS_VarDP=26|37|0;BaseQRankSum=-1.309;DP=65;MQRankSum=0.000;QUALapprox=977;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=0.978;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:26,37,0:63:99:977,0,726,1055,836,1891:10,16,19,18 +chrX 1611318 . A . . END=1611352 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1611353 . G C, 960.64 . AS_QUALapprox=|968|0;AS_VarDP=31|36|0;BaseQRankSum=0.349;DP=69;MQRankSum=0.000;QUALapprox=968;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=0.849;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:31,36,0:67:99:968,0,796,1061,904,1965:11,20,16,20 +chrX 1611354 . C . . END=1611377 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 1611378 . A G, 938.64 . AS_QUALapprox=|946|0;AS_VarDP=29|36|0;BaseQRankSum=0.342;DP=70;MQRankSum=0.000;QUALapprox=946;RAW_GT_COUNT=0,1,0;RAW_MQandDP=252000,70;ReadPosRankSum=-0.654;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:29,36,0:65:99:946,0,713,1033,821,1854:7,22,16,20 +chrX 1611379 . G . . END=1611443 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1611444 . T C, 1121.64 . AS_QUALapprox=|1129|0;AS_VarDP=34|41|0;BaseQRankSum=0.990;DP=76;MQRankSum=0.000;QUALapprox=1129;RAW_GT_COUNT=0,1,0;RAW_MQandDP=273600,76;ReadPosRankSum=0.506;VarDP=75 GT:AD:DP:GQ:PL:SB 0/1:34,41,0:75:99:1129,0,866,1232,989,2221:13,21,19,22 +chrX 1611445 . T . . END=1611573 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 1611574 . C T, 719.64 . AS_QUALapprox=|727|0;AS_VarDP=41|21|0;BaseQRankSum=1.997;DP=64;MQRankSum=-3.871;QUALapprox=727;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219438,64;ReadPosRankSum=0.620;VarDP=62 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:41,21,0:62:99:0|1:1611574_C_T:727,0,1611,850,1674,2524:1611574:27,14,8,13 +chrX 1611575 . G . . END=1611583 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1611584 . C T, 656.64 . AS_QUALapprox=|664|0;AS_VarDP=41|19|0;BaseQRankSum=2.734;DP=61;MQRankSum=-4.076;QUALapprox=664;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208638,61;ReadPosRankSum=2.186;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:41,19,0:60:99:0|1:1611574_C_T:664,0,1647,788,1704,2492:1611574:28,13,8,11 +chrX 1611585 . T . . END=1611588 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1611589 . T G, 621.64 . AS_QUALapprox=|629|0;AS_VarDP=42|18|0;BaseQRankSum=2.610;DP=62;MQRankSum=-4.239;QUALapprox=629;RAW_GT_COUNT=0,1,0;RAW_MQandDP=209367,62;ReadPosRankSum=2.461;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:42,18,0:60:99:0|1:1611574_C_T:629,0,1680,756,1734,2490:1611574:29,13,8,10 +chrX 1611590 . G . . END=1611623 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1611624 . T G, 346.64 . AS_QUALapprox=|354|0;AS_VarDP=42|19|0;BaseQRankSum=-1.188;DP=63;MQRankSum=-4.421;QUALapprox=354;RAW_GT_COUNT=0,1,0;RAW_MQandDP=210848,63;ReadPosRankSum=0.989;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:42,19,0:61:99:354,0,1128,479,1183,1662:28,14,7,12 +chrX 1611625 . C . . END=1611700 GT:DP:GQ:MIN_DP:PL 0/0:49:75:49:0,75,1121 +chrX 1611701 . C . . END=1611701 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,903 +chrX 1611702 . G . . END=1612061 GT:DP:GQ:MIN_DP:PL 0/0:35:30:33:0,30,630 +chrX 1612062 . C T, 1539.06 . AS_QUALapprox=|1553|0;AS_VarDP=0|48|0;DP=50;QUALapprox=1553;RAW_GT_COUNT=0,0,1;RAW_MQandDP=166109,50;VarDP=48 GT:AD:DP:GQ:PL:SB 1/1:0,48,0:48:99:1553,144,0,1553,144,1553:0,0,27,21 +chrX 1612063 . G . . END=1612102 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 1612103 . C T, 731.64 . AS_QUALapprox=|739|0;AS_VarDP=34|21|0;BaseQRankSum=1.658;DP=55;MQRankSum=-4.627;QUALapprox=739;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183711,55;ReadPosRankSum=-1.997;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:34,21,0:55:99:0|1:1612103_C_T:739,0,1293,841,1356,2197:1612103:21,13,11,10 +chrX 1612104 . G . . END=1612126 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1612127 . A G, 1018.64 . AS_QUALapprox=|1026|0;AS_VarDP=36|28|0;BaseQRankSum=0.562;DP=66;MQRankSum=-4.068;QUALapprox=1026;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223311,66;ReadPosRankSum=-2.326;VarDP=64 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:36,28,0:64:99:0|1:1612103_C_T:1026,0,1427,1135,1512,2646:1612103:21,15,14,14 +chrX 1612128 . T A, 1018.64 . AS_QUALapprox=|1026|0;AS_VarDP=36|28|0;BaseQRankSum=0.718;DP=67;MQRankSum=-4.068;QUALapprox=1026;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226911,67;ReadPosRankSum=-2.533;VarDP=64 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:36,28,0:64:99:0|1:1612103_C_T:1026,0,1427,1135,1512,2646:1612103:21,15,14,14 +chrX 1612129 . T . . END=1612178 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 1612179 . G C, 770.64 . AS_QUALapprox=|778|0;AS_VarDP=30|30|0;BaseQRankSum=0.294;DP=66;MQRankSum=-2.772;QUALapprox=778;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226387,66;ReadPosRankSum=0.954;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:30,30,0:60:99:778,0,766,868,856,1724:16,14,18,12 +chrX 1612180 . G . . END=1612284 GT:DP:GQ:MIN_DP:PL 0/0:62:93:62:0,93,1630 +chrX 1612285 . CAA C, 657.60 . AS_QUALapprox=|665|0;AS_VarDP=28|23|0;BaseQRankSum=0.380;DP=67;MQRankSum=1.625;QUALapprox=665;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237365,67;ReadPosRankSum=1.045;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:28,23,0:51:99:665,0,823,750,892,1642:11,17,14,9 +chrX 1612288 . A . . END=1612604 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,101,1549 +chrX 1612605 . C T, 763.64 . AS_QUALapprox=|771|0;AS_VarDP=23|29|0;BaseQRankSum=1.819;DP=53;MQRankSum=-0.852;QUALapprox=771;RAW_GT_COUNT=0,1,0;RAW_MQandDP=188041,53;ReadPosRankSum=0.553;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:23,29,0:52:99:771,0,544,840,630,1470:10,13,15,14 +chrX 1612606 . G . . END=1613130 GT:DP:GQ:MIN_DP:PL 0/0:67:56:67:0,56,1306 +chrX 1613131 . CCTTT C, 787.60 . AS_QUALapprox=|795|0;AS_VarDP=29|21|0;BaseQRankSum=2.153;DP=54;MQRankSum=0.000;QUALapprox=795;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=-0.988;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:29,21,0:50:99:795,0,1134,882,1197,2079:11,18,9,12 +chrX 1613136 . C . . END=1613197 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,99,1380 +chrX 1613198 . T . . END=1613198 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,1206 +chrX 1613199 . C CTT, 528.93 . AS_QUALapprox=|554|0;AS_VarDP=19|18|0;BaseQRankSum=-0.062;DP=48;MQRankSum=0.000;QUALapprox=554;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=-0.022;VarDP=37 GT:AD:DP:GQ:PL:SB 0/1:19,18,0:37:99:554,0,671,585,657,1300:9,6,8,6 +chrX 1613200 . T . . END=1613200 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,111,1665 +chrX 1613201 . C . . END=1613201 GT:DP:GQ:MIN_DP:PL 0/0:50:0:50:0,0,1259 +chrX 1613202 . T . . END=1613708 GT:DP:GQ:MIN_DP:PL 0/0:58:65:58:0,65,982 +chrX 1613709 . C G, 935.64 . AS_QUALapprox=|943|0;AS_VarDP=39|35|0;BaseQRankSum=0.965;DP=77;MQRankSum=0.000;QUALapprox=943;RAW_GT_COUNT=0,1,0;RAW_MQandDP=277200,77;ReadPosRankSum=0.412;VarDP=74 GT:AD:DP:GQ:PL:SB 0/1:39,35,0:74:99:943,0,1043,1061,1148,2208:22,17,15,20 +chrX 1613710 . A . . END=1613819 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,117,1629 +chrX 1613820 . C T, 597.64 . AS_QUALapprox=|605|0;AS_VarDP=25|22|0;BaseQRankSum=1.988;DP=49;MQRankSum=0.000;QUALapprox=605;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=-0.309;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:25,22,0:47:99:605,0,602,679,668,1347:11,14,8,14 +chrX 1613821 . G . . END=1613930 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,116,1613 +chrX 1613931 . G A, 667.64 . AS_QUALapprox=|675|0;AS_VarDP=23|25|0;BaseQRankSum=0.579;DP=49;MQRankSum=0.000;QUALapprox=675;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=0.392;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:23,25,0:48:99:675,0,577,744,652,1396:8,15,12,13 +chrX 1613932 . T . . END=1614163 GT:DP:GQ:MIN_DP:PL 0/0:45:57:45:0,57,1169 +chrX 1614164 . G T, 405.64 . AS_QUALapprox=|413|0;AS_VarDP=21|15|0;BaseQRankSum=1.541;DP=39;MQRankSum=-1.127;QUALapprox=413;RAW_GT_COUNT=0,1,0;RAW_MQandDP=134873,39;ReadPosRankSum=0.465;VarDP=36 GT:AD:DP:GQ:PL:SB 0/1:21,15,0:36:99:413,0,592,476,637,1113:9,12,7,8 +chrX 1614165 . G . . END=1614171 GT:DP:GQ:MIN_DP:PL 0/0:41:47:41:0,47,1126 +chrX 1614172 . T . . END=1614172 GT:DP:GQ:MIN_DP:PL 0/0:43:6:43:0,6,1117 +chrX 1614173 . C . . END=1614371 GT:DP:GQ:MIN_DP:PL 0/0:47:61:47:0,61,1211 +chrX 1614372 . ACAC A, 907.60 . AS_QUALapprox=|915|0;AS_VarDP=20|24|0;BaseQRankSum=-0.995;DP=49;MQRankSum=1.600;QUALapprox=915;RAW_GT_COUNT=0,1,0;RAW_MQandDP=173450,49;ReadPosRankSum=-0.049;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:20,24,0:44:99:915,0,701,975,774,1749:8,12,15,9 +chrX 1614376 . C . . END=1614454 GT:DP:GQ:MIN_DP:PL 0/0:39:88:39:0,88,1152 +chrX 1614455 . G T, 738.64 . AS_QUALapprox=|746|0;AS_VarDP=21|21|0;BaseQRankSum=-0.564;DP=42;MQRankSum=0.000;QUALapprox=746;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151200,42;ReadPosRankSum=0.529;VarDP=42 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,21,0:42:99:0|1:1614455_G_T:746,0,808,809,872,1680:1614455:8,13,12,9 +chrX 1614456 . G . . END=1614477 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,108,1240 +chrX 1614478 . C T, 745.64 . AS_QUALapprox=|753|0;AS_VarDP=22|21|0;BaseQRankSum=-1.187;DP=44;MQRankSum=0.000;QUALapprox=753;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=1.185;VarDP=43 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,21,0:43:99:0|1:1614455_G_T:753,0,840,819,903,1722:1614455:10,12,13,8 +chrX 1614479 . C . . END=1614889 GT:DP:GQ:MIN_DP:PL 0/0:47:69:47:0,69,978 +chrX 1614890 . G A, 705.64 . AS_QUALapprox=|713|0;AS_VarDP=21|26|0;BaseQRankSum=-1.142;DP=50;MQRankSum=0.000;QUALapprox=713;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=0.557;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:21,26,0:47:99:713,0,578,776,656,1432:9,12,10,16 +chrX 1614891 . A . . END=1614998 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 1614999 . G C, 950.64 . AS_QUALapprox=|958|0;AS_VarDP=33|35|0;BaseQRankSum=1.075;DP=70;MQRankSum=0.000;QUALapprox=958;RAW_GT_COUNT=0,1,0;RAW_MQandDP=252000,70;ReadPosRankSum=0.356;VarDP=68 GT:AD:DP:GQ:PL:SB 0/1:33,35,0:68:99:958,0,858,1057,963,2020:22,11,16,19 +chrX 1615000 . C . . END=1615026 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 1615027 . G A, 764.64 . AS_QUALapprox=|772|0;AS_VarDP=33|29|0;BaseQRankSum=-0.155;DP=63;MQRankSum=0.000;QUALapprox=772;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=0.663;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:33,29,0:62:99:772,0,896,871,983,1854:17,16,18,11 +chrX 1615028 . T . . END=1615100 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 1615101 . T C, 749.64 . AS_QUALapprox=|757|0;AS_VarDP=23|29|0;BaseQRankSum=-2.175;DP=57;MQRankSum=0.000;QUALapprox=757;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=1.226;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:23,29,0:52:99:757,0,634,826,720,1546:8,15,13,16 +chrX 1615102 . G . . END=1615492 GT:DP:GQ:MIN_DP:PL 0/0:52:94:52:0,94,1295 +chrX 1615493 . T A, 1568.06 . AS_QUALapprox=|1582|0;AS_VarDP=0|48|0;DP=49;QUALapprox=1582;RAW_GT_COUNT=0,0,1;RAW_MQandDP=174481,49;VarDP=48 GT:AD:DP:GQ:PL:SB 1/1:0,48,0:48:99:1582,144,0,1582,144,1582:0,0,24,24 +chrX 1615494 . C . . END=1615771 GT:DP:GQ:MIN_DP:PL 0/0:51:98:51:0,98,1325 +chrX 1615772 . C A, 1954.06 . AS_QUALapprox=|1968|0;AS_VarDP=0|62|0;DP=62;QUALapprox=1968;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:0,62,0:62:99:1968,186,0,1968,186,1968:0,0,35,27 +chrX 1615773 . G . . END=1616029 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,120,1800 +chrX 1616030 . C CT, 680.60 . AS_QUALapprox=|688|0;AS_VarDP=31|30|0;BaseQRankSum=-0.426;DP=72;MQRankSum=0.000;QUALapprox=688;RAW_GT_COUNT=0,1,0;RAW_MQandDP=259200,72;ReadPosRankSum=2.453;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:31,30,0:61:99:688,0,746,781,836,1617:16,15,16,14 +chrX 1616031 . T . . END=1616044 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 1616045 . T C, 2001.06 . AS_QUALapprox=|2015|0;AS_VarDP=0|62|0;DP=67;QUALapprox=2015;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:0,62,0:62:99:2015,186,0,2015,186,2015:0,0,34,28 +chrX 1616046 . T . . END=1616194 GT:DP:GQ:MIN_DP:PL 0/0:57:77:57:0,77,1412 +chrX 1616195 . ATTTTTGTAT A, 2047.03 . AS_QUALapprox=|2061|0;AS_VarDP=0|46|0;DP=50;QUALapprox=2061;RAW_GT_COUNT=0,0,1;RAW_MQandDP=179425,50;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:2061,139,0,2061,139,2061:0,0,29,17 +chrX 1616205 . T . . END=1616330 GT:DP:GQ:MIN_DP:PL 0/0:63:43:63:0,43,1384 +chrX 1616331 . T G, 2288.06 . AS_QUALapprox=|2302|0;AS_VarDP=0|71|0;DP=71;QUALapprox=2302;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255025,71;VarDP=71 GT:AD:DP:GQ:PL:SB 1/1:0,71,0:71:99:2302,212,0,2302,212,2302:0,0,30,41 +chrX 1616332 . G . . END=1616529 GT:DP:GQ:MIN_DP:PL 0/0:55:88:55:0,88,1424 +chrX 1616530 . T C, 691.64 . AS_QUALapprox=|699|0;AS_VarDP=25|25|0;BaseQRankSum=0.021;DP=53;MQRankSum=0.000;QUALapprox=699;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=2.339;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:25,25,0:50:99:699,0,698,774,773,1547:14,11,15,10 +chrX 1616531 . A . . END=1617023 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 1617024 . T C, 1103.64 . AS_QUALapprox=|1111|0;AS_VarDP=26|40|0;BaseQRankSum=0.010;DP=71;MQRankSum=-0.775;QUALapprox=1111;RAW_GT_COUNT=0,1,0;RAW_MQandDP=252209,71;ReadPosRankSum=1.733;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:26,40,0:66:99:1111,0,641,1189,761,1950:10,16,23,17 +chrX 1617025 . T . . END=1617654 GT:DP:GQ:MIN_DP:PL 0/0:64:69:64:0,69,1529 +chrX 1617655 . G A, 739.64 . AS_QUALapprox=|747|0;AS_VarDP=22|29|0;BaseQRankSum=1.119;DP=55;MQRankSum=1.668;QUALapprox=747;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194850,55;ReadPosRankSum=-0.200;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:22,29,0:51:99:747,0,463,811,549,1361:12,10,21,8 +chrX 1617656 . C . . END=1618589 GT:DP:GQ:MIN_DP:PL 0/0:65:49:65:0,49,1404 +chrX 1618590 . G . . END=1618590 GT:DP:GQ:MIN_DP:PL 0/0:48:15:48:0,15,1360 +chrX 1618591 . A . . END=1620165 GT:DP:GQ:MIN_DP:PL 0/0:60:40:60:0,40,1193 +chrX 1620166 . C CT, 151.60 . AS_QUALapprox=|159|0;AS_VarDP=4|11|0;BaseQRankSum=0.772;DP=40;MQRankSum=-0.452;QUALapprox=159;RAW_GT_COUNT=0,1,0;RAW_MQandDP=141425,40;ReadPosRankSum=0.590;VarDP=15 GT:AD:DP:GQ:PL:SB 0/1:4,11,0:15:35:159,0,35,171,67,238:0,4,10,1 +chrX 1620167 . T . . END=1620189 GT:DP:GQ:MIN_DP:PL 0/0:54:54:54:0,54,810 +chrX 1620190 . G . . END=1620191 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,382 +chrX 1620192 . G . . END=1623053 GT:DP:GQ:MIN_DP:PL 0/0:43:20:28:0,20,775 +chrX 1623054 . T C, 797.64 . AS_QUALapprox=|805|0;AS_VarDP=28|34|0;BaseQRankSum=-1.896;DP=63;MQRankSum=0.000;QUALapprox=805;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=0.354;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:28,34,0:62:99:805,0,739,889,839,1728:19,9,17,17 +chrX 1623055 . A . . END=1623743 GT:DP:GQ:MIN_DP:PL 0/0:54:53:54:0,53,1360 +chrX 1623744 . A G, 471.64 . AS_QUALapprox=|479|0;AS_VarDP=24|20|0;BaseQRankSum=-0.695;DP=48;MQRankSum=0.000;QUALapprox=479;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=0.896;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:24,20,0:44:99:479,0,626,550,686,1236:10,14,13,7 +chrX 1623745 . T . . END=1624557 GT:DP:GQ:MIN_DP:PL 0/0:48:29:41:0,29,994 +chrX 1624558 . G . . END=1624558 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,901 +chrX 1624559 . G . . END=1624619 GT:DP:GQ:MIN_DP:PL 0/0:45:24:43:0,24,1084 +chrX 1624620 . T . . END=1624620 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,886 +chrX 1624621 . G . . END=1624681 GT:DP:GQ:MIN_DP:PL 0/0:33:57:33:0,57,855 +chrX 1624682 . T . . END=1624682 GT:DP:GQ:MIN_DP:PL 0/0:21:0:21:0,0,293 +chrX 1624683 . G . . END=1624690 GT:DP:GQ:MIN_DP:PL 0/0:19:23:16:0,23,497 +chrX 1624691 . A . . END=1624691 GT:DP:GQ:MIN_DP:PL 0/0:19:0:19:0,0,272 +chrX 1624692 . C . . END=1624713 GT:DP:GQ:MIN_DP:PL 0/0:19:37:17:0,37,522 +chrX 1624714 . G . . END=1624714 GT:DP:GQ:MIN_DP:PL 0/0:15:10:15:0,10,442 +chrX 1624715 . G . . END=1624760 GT:DP:GQ:MIN_DP:PL 0/0:13:25:9:0,25,283 +chrX 1624761 . A . . END=1624762 GT:DP:GQ:MIN_DP:PL 0/0:13:14:13:0,14,342 +chrX 1624763 . G . . END=1624780 GT:DP:GQ:MIN_DP:PL 0/0:13:25:13:0,25,372 +chrX 1624781 . A . . END=1624781 GT:DP:GQ:MIN_DP:PL 0/0:14:7:14:0,7,316 +chrX 1624782 . C . . END=1624805 GT:DP:GQ:MIN_DP:PL 0/0:14:30:13:0,30,387 +chrX 1624806 . G . . END=1624806 GT:DP:GQ:MIN_DP:PL 0/0:17:16:17:0,16,441 +chrX 1624807 . G . . END=1624812 GT:DP:GQ:MIN_DP:PL 0/0:14:30:14:0,30,297 +chrX 1624813 . A . . END=1624814 GT:DP:GQ:MIN_DP:PL 0/0:10:0:10:0,0,139 +chrX 1624815 . C . . END=1624816 GT:DP:GQ:MIN_DP:PL 0/0:13:36:13:0,36,387 +chrX 1624817 . A . . END=1624817 GT:DP:GQ:MIN_DP:PL 0/0:13:4:13:0,4,342 +chrX 1624818 . G . . END=1624823 GT:DP:GQ:MIN_DP:PL 0/0:16:45:16:0,45,491 +chrX 1624824 . T . . END=1624824 GT:DP:GQ:MIN_DP:PL 0/0:18:5:18:0,5,497 +chrX 1624825 . G . . END=1624826 GT:DP:GQ:MIN_DP:PL 0/0:18:51:18:0,51,606 +chrX 1624827 . T . . END=1624827 GT:DP:GQ:MIN_DP:PL 0/0:18:19:18:0,19,546 +chrX 1624828 . G . . END=1624836 GT:DP:GQ:MIN_DP:PL 0/0:19:22:17:0,22,565 +chrX 1624837 . G . . END=1624837 GT:DP:GQ:MIN_DP:PL 0/0:18:0:18:0,0,178 +chrX 1624838 . G . . END=1624843 GT:DP:GQ:MIN_DP:PL 0/0:20:51:20:0,51,540 +chrX 1624844 . A . . END=1624844 GT:DP:GQ:MIN_DP:PL 0/0:17:1:17:0,1,401 +chrX 1624845 . C . . END=1624874 GT:DP:GQ:MIN_DP:PL 0/0:23:41:23:0,41,586 +chrX 1624875 . A . . END=1624875 GT:DP:GQ:MIN_DP:PL 0/0:25:0:25:0,0,0 +chrX 1624876 . C . . END=1624930 GT:DP:GQ:MIN_DP:PL 0/0:36:68:36:0,68,884 +chrX 1624931 . C . . END=1624931 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,877 +chrX 1624932 . G . . END=1625107 GT:DP:GQ:MIN_DP:PL 0/0:78:44:78:0,44,1356 +chrX 1625108 . CT C, 534.60 . AS_QUALapprox=|542|0;AS_VarDP=27|27|0;BaseQRankSum=-1.232;DP=71;MQRankSum=0.000;QUALapprox=542;RAW_GT_COUNT=0,1,0;RAW_MQandDP=255600,71;ReadPosRankSum=0.554;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:27,27,0:54:99:542,0,533,623,614,1237:13,14,9,18 +chrX 1625110 . T . . END=1625259 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1625260 . A G, 926.64 . AS_QUALapprox=|934|0;AS_VarDP=22|37|0;BaseQRankSum=-1.010;DP=63;MQRankSum=0.000;QUALapprox=934;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=-0.306;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:22,37,0:59:99:934,0,524,1000,634,1634:11,11,22,15 +chrX 1625261 . C . . END=1625527 GT:DP:GQ:MIN_DP:PL 0/0:56:45:56:0,45,1142 +chrX 1625528 . A AGAAG, 523.60 . AS_QUALapprox=|531|0;AS_VarDP=15|15|0;BaseQRankSum=-1.054;DP=35;MQRankSum=-0.933;QUALapprox=531;RAW_GT_COUNT=0,1,0;RAW_MQandDP=124900,35;ReadPosRankSum=-0.228;VarDP=30 GT:AD:DP:GQ:PL:SB 0/1:15,15,0:30:99:531,0,524,577,569,1146:14,1,11,4 +chrX 1625529 . G . . END=1625550 GT:DP:GQ:MIN_DP:PL 0/0:32:63:32:0,63,945 +chrX 1625551 . A AGGGAGGGAGGGAGGGAAAGGGG, 500.60 . AS_QUALapprox=|508|0;AS_VarDP=12|13|0;BaseQRankSum=0.473;DP=32;MQRankSum=-0.881;QUALapprox=508;RAW_GT_COUNT=0,1,0;RAW_MQandDP=114100,32;ReadPosRankSum=0.899;VarDP=25 GT:AD:DP:GQ:PL:SB 0/1:12,13,0:25:99:508,0,466,546,506,1051:10,2,13,0 +chrX 1625552 . G . . END=1625583 GT:DP:GQ:MIN_DP:PL 0/0:36:55:31:0,55,923 +chrX 1625584 . A . . END=1625584 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,974 +chrX 1625585 . A . . END=1625585 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,111,1665 +chrX 1625586 . T . . END=1625586 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,862 +chrX 1625587 . G . . END=1625589 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,114,1710 +chrX 1625590 . A . . END=1625591 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,987 +chrX 1625592 . G . . END=1625592 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,107,1464 +chrX 1625593 . T . . END=1625595 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,1003 +chrX 1625596 . G . . END=1625599 GT:DP:GQ:MIN_DP:PL 0/0:48:29:46:0,29,1271 +chrX 1625600 . A . . END=1625600 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,1085 +chrX 1625601 . A . . END=1625601 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 1625602 . G . . END=1625605 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,1048 +chrX 1625606 . G . . END=1625903 GT:DP:GQ:MIN_DP:PL 0/0:46:28:43:0,28,1203 +chrX 1625904 . A G, 1200.06 . AS_QUALapprox=|1214|0;AS_VarDP=0|37|0;DP=39;QUALapprox=1214;RAW_GT_COUNT=0,0,1;RAW_MQandDP=139401,39;VarDP=37 GT:AD:DP:GQ:PL:SB 1/1:0,37,0:37:99:1214,111,0,1214,111,1214:0,0,23,14 +chrX 1625905 . A . . END=1625953 GT:DP:GQ:MIN_DP:PL 0/0:32:58:32:0,58,899 +chrX 1625954 . CAA C,CAAAA, 660.02 . AS_QUALapprox=|249|355|0;AS_VarDP=0|10|16|0;DP=39;QUALapprox=677;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136400,39;VarDP=26 GT:AD:DP:GQ:PL:SB 1/2:0,10,16,0:26:99:677,428,645,322,0,369,738,568,379,886:0,0,15,11 +chrX 1625957 . A . . END=1626228 GT:DP:GQ:MIN_DP:PL 0/0:47:36:45:0,36,1244 +chrX 1626229 . A . . END=1626229 GT:DP:GQ:MIN_DP:PL 0/0:59:0:59:0,0,1411 +chrX 1626230 . T . . END=1626233 GT:DP:GQ:MIN_DP:PL 0/0:57:39:56:0,39,1608 +chrX 1626234 . CT C, 589.02 . AS_QUALapprox=|603|0;AS_VarDP=3|30|0;BaseQRankSum=-0.701;DP=46;MQRankSum=0.000;QUALapprox=603;RAW_GT_COUNT=0,0,1;RAW_MQandDP=163925,46;ReadPosRankSum=-0.428;VarDP=33 GT:AD:DP:GQ:PL:SB 1/1:3,30,0:33:31:603,31,0,611,89,669:2,1,9,21 +chrX 1626236 . T . . END=1626270 GT:DP:GQ:MIN_DP:PL 0/0:43:41:43:0,41,1076 +chrX 1626271 . G . . END=1626271 GT:DP:GQ:MIN_DP:PL 0/0:53:0:53:0,0,1157 +chrX 1626272 . T . . END=1626406 GT:DP:GQ:MIN_DP:PL 0/0:58:90:58:0,90,1410 +chrX 1626407 . G C, 2225.06 . AS_QUALapprox=|2239|0;AS_VarDP=0|67|0;DP=69;QUALapprox=2239;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=67 GT:AD:DP:GQ:PL:SB 1/1:0,67,0:67:99:2239,201,0,2239,201,2239:0,0,41,26 +chrX 1626408 . T . . END=1626818 GT:DP:GQ:MIN_DP:PL 0/0:51:64:44:0,64,1329 +chrX 1626819 . C T, 1710.06 . AS_QUALapprox=|1717|0;AS_VarDP=3|42|0;BaseQRankSum=2.572;DP=46;MQRankSum=3.831;QUALapprox=1717;RAW_GT_COUNT=0,1,0;RAW_MQandDP=163600,46;ReadPosRankSum=0.000;VarDP=45 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:3,42,0:45:0:0|1:1626819_C_T:1717,0,0,1726,126,1852:1626819:2,1,20,22 +chrX 1626820 . G . . END=1626821 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,120,1800 +chrX 1626822 . G GT, 1770.28 . AS_QUALapprox=|1782|0;AS_VarDP=3|44|0;BaseQRankSum=1.301;DP=47;MQRankSum=3.917;QUALapprox=1782;RAW_GT_COUNT=0,0,1;RAW_MQandDP=167200,47;ReadPosRankSum=0.022;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:3,44,0:47:6:0|1:1626819_C_T:1782,6,0,1791,132,1917:1626819:2,1,22,22 +chrX 1626823 . T . . END=1626824 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,120,1800 +chrX 1626825 . C T, 1970.06 . AS_QUALapprox=|1984|0;AS_VarDP=1|46|0;BaseQRankSum=-0.586;DP=48;MQRankSum=6.930;QUALapprox=1984;RAW_GT_COUNT=0,0,1;RAW_MQandDP=170800,48;ReadPosRankSum=-0.732;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:1,46,0:47:99:1984,107,0,1987,138,2019:1,0,23,23 +chrX 1626826 . G . . END=1626952 GT:DP:GQ:MIN_DP:PL 0/0:61:62:61:0,62,1427 +chrX 1626953 . G C, 2199.06 . AS_QUALapprox=|2213|0;AS_VarDP=0|69|0;DP=70;QUALapprox=2213;RAW_GT_COUNT=0,0,1;RAW_MQandDP=247674,70;VarDP=69 GT:AD:DP:GQ:PL:SB 1/1:0,69,0:69:99:2213,207,0,2213,207,2213:0,0,38,31 +chrX 1626954 . A . . END=1627121 GT:DP:GQ:MIN_DP:PL 0/0:69:74:69:0,74,1800 +chrX 1627122 . C . . END=1627122 GT:DP:GQ:MIN_DP:PL 0/0:65:16:65:0,16,1620 +chrX 1627123 . G . . END=1627177 GT:DP:GQ:MIN_DP:PL 0/0:69:84:69:0,84,1800 +chrX 1627178 . T . . END=1627178 GT:DP:GQ:MIN_DP:PL 0/0:70:0:70:0,0,1739 +chrX 1627179 . A . . END=1627320 GT:DP:GQ:MIN_DP:PL 0/0:70:29:64:0,29,1466 +chrX 1627321 . A G, 3104.06 . AS_QUALapprox=|3118|0;AS_VarDP=1|73|0;BaseQRankSum=-0.658;DP=75;MQRankSum=-0.215;QUALapprox=3118;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262213,75;ReadPosRankSum=-0.878;VarDP=74 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:1,73,0:74:99:0|1:1627321_A_G:3118,178,0,3122,220,3163:1627321:1,0,36,37 +chrX 1627322 . T . . END=1627325 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 1627326 . C A, 2986.06 . AS_QUALapprox=|3000|0;AS_VarDP=1|69|0;BaseQRankSum=-0.417;DP=73;MQRankSum=-0.185;QUALapprox=3000;RAW_GT_COUNT=0,0,1;RAW_MQandDP=256012,73;ReadPosRankSum=-0.941;VarDP=70 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:1,69,0:70:99:0|1:1627321_A_G:3000,166,0,3003,208,3045:1627321:1,0,34,35 +chrX 1627327 . T . . END=1627359 GT:DP:GQ:MIN_DP:PL 0/0:74:99:74:0,120,1800 +chrX 1627360 . A G, 2328.06 . AS_QUALapprox=|2342|0;AS_VarDP=1|75|0;BaseQRankSum=-0.647;DP=83;MQRankSum=-0.177;QUALapprox=2342;RAW_GT_COUNT=0,0,1;RAW_MQandDP=293927,83;ReadPosRankSum=-1.003;VarDP=76 GT:AD:DP:GQ:PL:SB 1/1:1,75,0:76:99:2342,193,0,2345,224,2377:1,0,42,33 +chrX 1627361 . C . . END=1627632 GT:DP:GQ:MIN_DP:PL 0/0:75:99:75:0,99,1800 +chrX 1627633 . C CGAAAT, 801.60 . AS_QUALapprox=|809|0;AS_VarDP=17|21|0;BaseQRankSum=-1.799;DP=68;MQRankSum=0.000;QUALapprox=809;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=-0.705;VarDP=38 GT:AD:DP:GQ:PL:SB 0/1:17,21,0:38:99:809,0,642,861,705,1566:10,7,10,11 +chrX 1627634 . G . . END=1627679 GT:DP:GQ:MIN_DP:PL 0/0:67:24:66:0,24,1755 +chrX 1627680 . C . . END=1627680 GT:DP:GQ:MIN_DP:PL 0/0:63:15:63:0,15,1660 +chrX 1627681 . A . . END=1627935 GT:DP:GQ:MIN_DP:PL 0/0:68:25:66:0,25,1800 +chrX 1627936 . A G, 2758.06 . AS_QUALapprox=|2772|0;AS_VarDP=0|88|0;DP=90;QUALapprox=2772;RAW_GT_COUNT=0,0,1;RAW_MQandDP=324000,90;VarDP=88 GT:AD:DP:GQ:PL:SB 1/1:0,88,0:88:99:2772,263,0,2772,263,2772:0,0,45,43 +chrX 1627937 . T . . END=1627956 GT:DP:GQ:MIN_DP:PL 0/0:87:99:87:0,120,1800 +chrX 1627957 . A G, 2635.06 . AS_QUALapprox=|2649|0;AS_VarDP=0|83|0;DP=87;QUALapprox=2649;RAW_GT_COUNT=0,0,1;RAW_MQandDP=313200,87;VarDP=83 GT:AD:DP:GQ:PL:SB 1/1:0,83,0:83:99:2649,248,0,2649,248,2649:0,0,44,39 +chrX 1627958 . A . . END=1628062 GT:DP:GQ:MIN_DP:PL 0/0:82:99:82:0,120,1800 +chrX 1628063 . G A, 2413.06 . AS_QUALapprox=|2427|0;AS_VarDP=0|74|0;DP=78;QUALapprox=2427;RAW_GT_COUNT=0,0,1;RAW_MQandDP=280800,78;VarDP=74 GT:AD:DP:GQ:PL:SB 1/1:0,74,0:74:99:2427,222,0,2427,222,2427:0,0,45,29 +chrX 1628064 . T . . END=1628614 GT:DP:GQ:MIN_DP:PL 0/0:71:53:71:0,53,1115 +chrX 1628615 . C G, 1125.06 . AS_QUALapprox=|1139|0;AS_VarDP=0|38|0;DP=41;QUALapprox=1139;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147600,41;VarDP=38 GT:AD:DP:GQ:PL:SB 1/1:0,38,0:38:99:1139,112,0,1139,112,1139:0,0,12,26 +chrX 1628616 . T . . END=1628780 GT:DP:GQ:MIN_DP:PL 0/0:47:86:47:0,86,1257 +chrX 1628781 . C T, 575.64 . AS_QUALapprox=|583|0;AS_VarDP=23|22|0;BaseQRankSum=-0.070;DP=50;MQRankSum=0.000;QUALapprox=583;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=0.068;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:23,22,0:45:99:583,0,551,652,617,1269:12,11,9,13 +chrX 1628782 . C . . END=1628799 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,114,1710 +chrX 1628800 . A . . END=1628800 GT:DP:GQ:MIN_DP:PL 0/0:40:17:40:0,17,982 +chrX 1628801 . C . . END=1628829 GT:DP:GQ:MIN_DP:PL 0/0:41:82:41:0,82,1077 +chrX 1628830 . T TCTC, 1582.03 . AS_QUALapprox=|1596|0;AS_VarDP=1|37|0;BaseQRankSum=-0.583;DP=42;MQRankSum=0.000;QUALapprox=1596;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151200,42;ReadPosRankSum=1.231;VarDP=38 GT:AD:DP:GQ:PL:SB 1/1:1,37,0:38:69:1596,69,0,1599,111,1642:0,1,21,16 +chrX 1628831 . C . . END=1628917 GT:DP:GQ:MIN_DP:PL 0/0:46:43:41:0,43,1098 +chrX 1628918 . G A, 641.64 . AS_QUALapprox=|649|0;AS_VarDP=25|29|0;BaseQRankSum=1.025;DP=56;MQRankSum=0.000;QUALapprox=649;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-1.709;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:25,29,0:54:99:649,0,480,722,565,1286:15,10,16,13 +chrX 1628919 . T . . END=1628941 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 1628942 . CTT C, 937.60 . AS_QUALapprox=|945|0;AS_VarDP=23|29|0;BaseQRankSum=1.140;DP=64;MQRankSum=0.000;QUALapprox=945;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=-0.049;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,29,0:52:99:0|1:1628942_CTT_C:945,0,863,1014,951,1965:1628942:12,11,13,16 +chrX 1628944 . T *,C, 619.04 . AS_QUALapprox=|0|588|0;AS_VarDP=0|32|22|0;DP=63;QUALapprox=1898;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=54 GT:AD:DP:GQ:PL:SB 1/2:0,32,22,0:54:99:1898,629,813,1310,0,1443,1951,799,1422,2167:0,0,26,28 +chrX 1628945 . T . . END=1628946 GT:DP:GQ:MIN_DP:PL 0/0:58:63:58:0,63,1566 +chrX 1628947 . TTTCTTTCC *,T, 1114.04 . AS_QUALapprox=|0|1240|0;AS_VarDP=23|0|29|0;BaseQRankSum=0.028;DP=60;MQRankSum=0.000;QUALapprox=1240;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=1.115;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|2:23,0,29,0:52:99:0|1:1628942_CTT_C:1240,1085,2135,0,937,854,1217,2097,957,2197:1628942:12,11,13,16 +chrX 1628956 . T . . END=1629081 GT:DP:GQ:MIN_DP:PL 0/0:62:95:62:0,95,1233 +chrX 1629082 . TTA T, 1815.03 . AS_QUALapprox=|1829|0;AS_VarDP=1|49|0;DP=61;MQRankSum=0.000;QUALapprox=1829;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:1,49,0:50:99:1829,119,0,1832,148,1861:0,1,20,29 +chrX 1629085 . T . . END=1629311 GT:DP:GQ:MIN_DP:PL 0/0:70:95:70:0,95,1744 +chrX 1629312 . G C, 715.64 . AS_QUALapprox=|723|0;AS_VarDP=38|27|0;BaseQRankSum=1.289;DP=68;MQRankSum=0.000;QUALapprox=723;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=-0.839;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:38,27,0:65:99:723,0,1040,837,1121,1958:16,22,18,9 +chrX 1629313 . A . . END=1629380 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1629381 . C T, 539.64 . AS_QUALapprox=|547|0;AS_VarDP=30|21|0;BaseQRankSum=-0.080;DP=55;MQRankSum=0.000;QUALapprox=547;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-0.536;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:30,21,0:51:99:547,0,849,637,913,1549:14,16,10,11 +chrX 1629382 . A . . END=1629687 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1552 +chrX 1629688 . A C, 899.64 . AS_QUALapprox=|907|0;AS_VarDP=27|33|0;BaseQRankSum=-2.302;DP=62;MQRankSum=0.000;QUALapprox=907;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=0.602;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:27,33,0:60:99:907,0,758,988,857,1845:16,11,16,17 +chrX 1629689 . T . . END=1630016 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 1630017 . T C, 742.64 . AS_QUALapprox=|750|0;AS_VarDP=37|29|0;BaseQRankSum=-0.588;DP=70;MQRankSum=0.000;QUALapprox=750;RAW_GT_COUNT=0,1,0;RAW_MQandDP=252000,70;ReadPosRankSum=-1.370;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:37,29,0:66:99:750,0,983,860,1071,1930:22,15,11,18 +chrX 1630018 . T . . END=1630143 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 1630144 . C CT, 569.60 . AS_QUALapprox=|577|0;AS_VarDP=31|26|0;BaseQRankSum=1.264;DP=72;MQRankSum=0.000;QUALapprox=577;RAW_GT_COUNT=0,1,0;RAW_MQandDP=259200,72;ReadPosRankSum=0.289;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:31,26,0:57:99:577,0,755,670,833,1502:20,11,16,10 +chrX 1630145 . T . . END=1630194 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 1630195 . A G, 1092.64 . AS_QUALapprox=|1100|0;AS_VarDP=20|40|0;BaseQRankSum=-1.530;DP=64;MQRankSum=-0.672;QUALapprox=1100;RAW_GT_COUNT=0,1,0;RAW_MQandDP=229936,64;ReadPosRankSum=-1.114;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:20,40,0:60:99:1100,0,506,1161,625,1786:10,10,20,20 +chrX 1630196 . T . . END=1630296 GT:DP:GQ:MIN_DP:PL 0/0:50:29:46:0,29,1261 +chrX 1630297 . C . . END=1630297 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,1267 +chrX 1630298 . T . . END=1630298 GT:DP:GQ:MIN_DP:PL 0/0:49:75:49:0,75,1125 +chrX 1630299 . A . . END=1630299 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1146 +chrX 1630300 . A ATTT, 829.03 . AS_QUALapprox=|843|0;AS_VarDP=0|24|0;DP=44;QUALapprox=843;RAW_GT_COUNT=0,0,1;RAW_MQandDP=142517,44;VarDP=24 GT:AD:DP:GQ:PL:SB 1/1:0,24,0:24:72:843,72,0,844,72,845:0,0,12,12 +chrX 1630301 . T . . END=1630329 GT:DP:GQ:MIN_DP:PL 0/0:28:34:24:0,34,722 +chrX 1630330 . A . . END=1630330 GT:DP:GQ:MIN_DP:PL 0/0:24:4:24:0,4,536 +chrX 1630331 . A . . END=1630382 GT:DP:GQ:MIN_DP:PL 0/0:35:49:35:0,49,651 +chrX 1630383 . G A, 387.64 . AS_QUALapprox=|395|0;AS_VarDP=22|17|0;BaseQRankSum=-0.501;DP=41;MQRankSum=0.000;QUALapprox=395;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147600,41;ReadPosRankSum=-0.241;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:22,17,0:39:99:395,0,582,460,632,1092:4,18,6,11 +chrX 1630384 . C . . END=1630855 GT:DP:GQ:MIN_DP:PL 0/0:47:41:47:0,41,1097 +chrX 1630856 . G . . END=1630856 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1295 +chrX 1630857 . C . . END=1630858 GT:DP:GQ:MIN_DP:PL 0/0:53:37:52:0,37,1429 +chrX 1630859 . G . . END=1630859 GT:DP:GQ:MIN_DP:PL 0/0:54:8:54:0,8,1419 +chrX 1630860 . A . . END=1630866 GT:DP:GQ:MIN_DP:PL 0/0:54:33:52:0,33,1484 +chrX 1630867 . C . . END=1630867 GT:DP:GQ:MIN_DP:PL 0/0:50:0:50:0,0,1300 +chrX 1630868 . T . . END=1630870 GT:DP:GQ:MIN_DP:PL 0/0:51:49:51:0,49,1394 +chrX 1630871 . T TTTTA, 1222.03 . AS_QUALapprox=|1236|0;AS_VarDP=0|28|0;DP=43;QUALapprox=1236;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154800,43;VarDP=28 GT:AD:DP:GQ:PL:SB 1/1:0,28,0:28:84:1236,84,0,1237,84,1237:0,0,12,16 +chrX 1630872 . T . . END=1630920 GT:DP:GQ:MIN_DP:PL 0/0:38:66:38:0,66,990 +chrX 1630921 . T A, 1229.06 . AS_QUALapprox=|1243|0;AS_VarDP=0|38|0;DP=39;QUALapprox=1243;RAW_GT_COUNT=0,0,1;RAW_MQandDP=139825,39;VarDP=38 GT:AD:DP:GQ:PL:SB 1/1:0,38,0:38:99:1243,114,0,1243,114,1243:0,0,24,14 +chrX 1630922 . T . . END=1630995 GT:DP:GQ:MIN_DP:PL 0/0:44:48:44:0,48,1127 +chrX 1630996 . T . . END=1630996 GT:DP:GQ:MIN_DP:PL 0/0:56:15:56:0,15,1579 +chrX 1630997 . G . . END=1631016 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,99,1683 +chrX 1631017 . T . . END=1631017 GT:DP:GQ:MIN_DP:PL 0/0:60:0:60:0,0,1491 +chrX 1631018 . C . . END=1631067 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,116,1723 +chrX 1631068 . G A, 509.64 . AS_QUALapprox=|517|0;AS_VarDP=28|20|0;BaseQRankSum=1.885;DP=51;MQRankSum=0.290;QUALapprox=517;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172136,51;ReadPosRankSum=1.161;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:28,20,0:48:99:517,0,714,600,774,1374:15,13,12,8 +chrX 1631069 . C . . END=1631083 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,105,1575 +chrX 1631084 . GT G, 549.60 . AS_QUALapprox=|557|0;AS_VarDP=17|24|0;BaseQRankSum=-0.564;DP=50;MQRankSum=-0.264;QUALapprox=557;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172536,50;ReadPosRankSum=-0.664;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:17,24,0:41:99:557,0,351,608,424,1032:8,9,14,10 +chrX 1631086 . T . . END=1631166 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,101,1455 +chrX 1631167 . G A, 717.64 . AS_QUALapprox=|725|0;AS_VarDP=26|27|0;BaseQRankSum=0.823;DP=55;MQRankSum=0.000;QUALapprox=725;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-0.632;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:26,27,0:53:99:725,0,655,803,736,1539:14,12,7,20 +chrX 1631168 . C . . END=1631198 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 1631199 . C G, 618.64 . AS_QUALapprox=|626|0;AS_VarDP=27|24|0;BaseQRankSum=-0.224;DP=51;MQRankSum=0.000;QUALapprox=626;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-0.406;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:27,24,0:51:99:626,0,746,707,817,1525:9,18,13,11 +chrX 1631200 . C . . END=1631416 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,116,1443 +chrX 1631417 . C T, 672.64 . AS_QUALapprox=|680|0;AS_VarDP=26|25|0;BaseQRankSum=1.951;DP=53;MQRankSum=0.000;QUALapprox=680;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=0.556;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:26,25,0:51:99:680,0,656,757,731,1488:9,17,10,15 +chrX 1631418 . A . . END=1631643 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,110,1404 +chrX 1631644 . G A, 870.64 . AS_QUALapprox=|878|0;AS_VarDP=21|32|0;BaseQRankSum=-0.447;DP=57;MQRankSum=-0.772;QUALapprox=878;RAW_GT_COUNT=0,1,0;RAW_MQandDP=204409,57;ReadPosRankSum=-0.418;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:21,32,0:53:99:878,0,539,941,635,1576:15,6,20,12 +chrX 1631645 . T . . END=1631844 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,100,1389 +chrX 1631845 . T C, 1513.06 . AS_QUALapprox=|1527|0;AS_VarDP=0|49|0;DP=50;QUALapprox=1527;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176073,50;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1527,145,0,1527,145,1527:0,0,19,30 +chrX 1631846 . G . . END=1631914 GT:DP:GQ:MIN_DP:PL 0/0:47:90:47:0,90,1350 +chrX 1631915 . A G, 518.64 . AS_QUALapprox=|526|0;AS_VarDP=18|20|0;BaseQRankSum=-1.950;DP=40;MQRankSum=0.000;QUALapprox=526;RAW_GT_COUNT=0,1,0;RAW_MQandDP=143536,40;ReadPosRankSum=1.082;VarDP=38 GT:AD:DP:GQ:PL:SB 0/1:18,20,0:38:99:526,0,511,580,570,1151:9,9,9,11 +chrX 1631916 . G . . END=1632388 GT:DP:GQ:MIN_DP:PL 0/0:53:55:53:0,55,1142 +chrX 1632389 . C T, 571.64 . AS_QUALapprox=|579|0;AS_VarDP=30|22|0;BaseQRankSum=0.920;DP=53;MQRankSum=-1.129;QUALapprox=579;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190116,53;ReadPosRankSum=0.491;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:30,22,0:52:99:579,0,801,668,868,1536:16,14,11,11 +chrX 1632390 . G . . END=1632517 GT:DP:GQ:MIN_DP:PL 0/0:51:97:51:0,97,1443 +chrX 1632518 . G C, 614.64 . AS_QUALapprox=|622|0;AS_VarDP=29|25|0;BaseQRankSum=-0.606;DP=56;MQRankSum=-1.879;QUALapprox=622;RAW_GT_COUNT=0,1,0;RAW_MQandDP=199445,56;ReadPosRankSum=-1.996;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:29,25,0:54:99:622,0,771,709,846,1555:14,15,12,13 +chrX 1632519 . G . . END=1632708 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 1632709 . T C, 1723.06 . AS_QUALapprox=|1737|0;AS_VarDP=0|54|0;DP=55;QUALapprox=1737;RAW_GT_COUNT=0,0,1;RAW_MQandDP=195361,55;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:1737,162,0,1737,162,1737:0,0,24,30 +chrX 1632710 . G . . END=1632811 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,103,1663 +chrX 1632812 . A G, 590.64 . AS_QUALapprox=|598|0;AS_VarDP=27|22|0;BaseQRankSum=0.689;DP=51;MQRankSum=0.000;QUALapprox=598;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=0.211;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:27,22,0:49:99:598,0,721,679,788,1466:17,10,17,5 +chrX 1632813 . T . . END=1632830 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 1632831 . C T, 521.64 . AS_QUALapprox=|529|0;AS_VarDP=29|20|0;BaseQRankSum=2.413;DP=49;MQRankSum=0.000;QUALapprox=529;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=0.295;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:29,20,0:49:99:529,0,750,615,810,1425:19,10,15,5 +chrX 1632832 . G . . END=1633015 GT:DP:GQ:MIN_DP:PL 0/0:48:82:48:0,82,1350 +chrX 1633016 . GA G, 1450.03 . AS_QUALapprox=|1464|0;AS_VarDP=0|48|0;DP=52;QUALapprox=1464;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=48 GT:AD:DP:GQ:PL:SB 1/1:0,48,0:48:99:1464,144,0,1464,144,1464:0,0,19,29 +chrX 1633018 . A . . END=1633641 GT:DP:GQ:MIN_DP:PL 0/0:62:64:62:0,64,1306 +chrX 1633642 . A ATTTT, 633.60 . AS_QUALapprox=|641|0;AS_VarDP=11|17|0;BaseQRankSum=-0.067;DP=47;MQRankSum=-1.107;QUALapprox=641;RAW_GT_COUNT=0,1,0;RAW_MQandDP=164516,47;ReadPosRankSum=-1.059;VarDP=28 GT:AD:DP:GQ:PL:SB 0/1:11,17,0:28:99:641,0,390,675,441,1116:5,6,8,9 +chrX 1633643 . T . . END=1633682 GT:DP:GQ:MIN_DP:PL 0/0:36:71:36:0,71,896 +chrX 1633683 . G A, 556.64 . AS_QUALapprox=|564|0;AS_VarDP=17|20|0;BaseQRankSum=2.024;DP=41;MQRankSum=0.000;QUALapprox=564;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147600,41;ReadPosRankSum=0.366;VarDP=37 GT:AD:DP:GQ:PL:SB 0/1:17,20,0:37:99:564,0,415,614,475,1089:8,9,8,12 +chrX 1633684 . G . . END=1633755 GT:DP:GQ:MIN_DP:PL 0/0:40:72:40:0,72,1148 +chrX 1633756 . A G, 637.64 . AS_QUALapprox=|645|0;AS_VarDP=25|23|0;BaseQRankSum=0.541;DP=51;MQRankSum=1.001;QUALapprox=645;RAW_GT_COUNT=0,1,0;RAW_MQandDP=178733,51;ReadPosRankSum=0.000;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:25,23,0:48:99:645,0,694,720,764,1484:11,14,10,13 +chrX 1633757 . G . . END=1633929 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1633930 . A G, 926.64 . AS_QUALapprox=|934|0;AS_VarDP=27|37|0;BaseQRankSum=-1.195;DP=67;MQRankSum=0.000;QUALapprox=934;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=-0.925;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:27,37,0:64:99:934,0,687,1015,797,1812:12,15,20,17 +chrX 1633931 . C . . END=1634224 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1634225 . G A, 1044.64 . AS_QUALapprox=|1052|0;AS_VarDP=34|37|0;BaseQRankSum=2.474;DP=73;MQRankSum=0.000;QUALapprox=1052;RAW_GT_COUNT=0,1,0;RAW_MQandDP=262800,73;ReadPosRankSum=-0.530;VarDP=71 GT:AD:DP:GQ:PL:SB 0/1:34,37,0:71:99:1052,0,849,1153,960,2113:18,16,21,16 +chrX 1634226 . A . . END=1634413 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 1634414 . A G, 971.64 . AS_QUALapprox=|979|0;AS_VarDP=34|35|0;BaseQRankSum=1.445;DP=72;MQRankSum=0.000;QUALapprox=979;RAW_GT_COUNT=0,1,0;RAW_MQandDP=259200,72;ReadPosRankSum=0.264;VarDP=69 GT:AD:DP:GQ:PL:SB 0/1:34,35,0:69:99:979,0,890,1081,995,2076:19,15,15,20 +chrX 1634415 . C . . END=1634652 GT:DP:GQ:MIN_DP:PL 0/0:74:99:74:0,120,1800 +chrX 1634653 . A AC, 450.60 . AS_QUALapprox=|458|0;AS_VarDP=39|24|0;BaseQRankSum=-0.099;DP=74;MQRankSum=-0.303;QUALapprox=458;RAW_GT_COUNT=0,1,0;RAW_MQandDP=264929,74;ReadPosRankSum=1.175;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:39,24,0:63:99:458,0,910,576,982,1557:20,19,15,9 +chrX 1634654 . C . . END=1634725 GT:DP:GQ:MIN_DP:PL 0/0:49:74:49:0,74,1293 +chrX 1634726 . G A, 678.64 . AS_QUALapprox=|686|0;AS_VarDP=19|27|0;BaseQRankSum=-0.653;DP=49;MQRankSum=-0.795;QUALapprox=686;RAW_GT_COUNT=0,1,0;RAW_MQandDP=173504,49;ReadPosRankSum=-0.246;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:19,27,0:46:99:686,0,458,742,539,1281:6,13,10,17 +chrX 1634727 . T . . END=1634883 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,101,1251 +chrX 1634884 . T C, 789.64 . AS_QUALapprox=|797|0;AS_VarDP=32|35|0;BaseQRankSum=-2.017;DP=71;MQRankSum=0.000;QUALapprox=797;RAW_GT_COUNT=0,1,0;RAW_MQandDP=255600,71;ReadPosRankSum=0.710;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:32,35,0:67:99:797,0,853,893,956,1848:12,20,18,17 +chrX 1634885 . T . . END=1634975 GT:DP:GQ:MIN_DP:PL 0/0:60:93:60:0,93,1395 +chrX 1634976 . C CT, 323.60 . AS_QUALapprox=|331|0;AS_VarDP=15|10|0;BaseQRankSum=0.295;DP=40;MQRankSum=-1.143;QUALapprox=331;RAW_GT_COUNT=0,1,0;RAW_MQandDP=140516,40;ReadPosRankSum=0.945;VarDP=25 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:15,10,0:25:99:0|1:1634976_C_CT:331,0,600,376,630,1006:1634976:9,6,5,5 +chrX 1634977 . T . . END=1634992 GT:DP:GQ:MIN_DP:PL 0/0:33:57:33:0,57,855 +chrX 1634993 . G C, 311.64 . AS_QUALapprox=|319|0;AS_VarDP=19|10|0;BaseQRankSum=0.482;DP=32;MQRankSum=0.000;QUALapprox=319;RAW_GT_COUNT=0,1,0;RAW_MQandDP=110069,32;ReadPosRankSum=0.515;VarDP=29 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:19,10,0:29:99:0|1:1634976_C_CT:319,0,768,376,798,1174:1634976:9,10,5,5 +chrX 1634994 . A . . END=1634996 GT:DP:GQ:MIN_DP:PL 0/0:26:51:26:0,51,765 +chrX 1634997 . T C, 246.64 . AS_QUALapprox=|254|0;AS_VarDP=20|8|0;BaseQRankSum=1.694;DP=28;MQRankSum=-0.237;QUALapprox=254;RAW_GT_COUNT=0,1,0;RAW_MQandDP=97153,28;ReadPosRankSum=0.145;VarDP=28 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:20,8,0:28:99:0|1:1634976_C_CT:254,0,816,314,840,1154:1634976:9,11,3,5 +chrX 1634998 . G . . END=1635005 GT:DP:GQ:MIN_DP:PL 0/0:24:42:24:0,42,630 +chrX 1635006 . G A, 274.64 . AS_QUALapprox=|282|0;AS_VarDP=18|8|0;BaseQRankSum=1.815;DP=26;MQRankSum=-1.175;QUALapprox=282;RAW_GT_COUNT=0,1,0;RAW_MQandDP=84518,26;ReadPosRankSum=-0.078;VarDP=26 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:18,8,0:26:99:0|1:1634976_C_CT:282,0,732,336,756,1092:1634976:6,12,3,5 +chrX 1635007 . C . . END=1635013 GT:DP:GQ:MIN_DP:PL 0/0:22:60:22:0,60,679 +chrX 1635014 . A G, 241.64 . AS_QUALapprox=|249|0;AS_VarDP=15|7|0;BaseQRankSum=-1.544;DP=22;MQRankSum=-1.925;QUALapprox=249;RAW_GT_COUNT=0,1,0;RAW_MQandDP=68543,22;ReadPosRankSum=-1.626;VarDP=22 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:15,7,0:22:99:0|1:1634976_C_CT:249,0,609,294,630,924:1634976:5,10,2,5 +chrX 1635015 . C . . END=1635023 GT:DP:GQ:MIN_DP:PL 0/0:21:57:21:0,57,675 +chrX 1635024 . G A, 238.64 . AS_QUALapprox=|246|0;AS_VarDP=16|7|0;BaseQRankSum=-0.864;DP=23;MQRankSum=-2.006;QUALapprox=246;RAW_GT_COUNT=0,1,0;RAW_MQandDP=72143,23;ReadPosRankSum=-1.906;VarDP=23 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:16,7,0:23:99:0|1:1634976_C_CT:246,0,651,294,672,966:1634976:5,11,2,5 +chrX 1635025 . A . . END=1635034 GT:DP:GQ:MIN_DP:PL 0/0:23:60:23:0,60,624 +chrX 1635035 . T C, 367.64 . AS_QUALapprox=|375|0;AS_VarDP=15|10|0;BaseQRankSum=0.698;DP=25;MQRankSum=-2.821;QUALapprox=375;RAW_GT_COUNT=0,1,0;RAW_MQandDP=76156,25;ReadPosRankSum=-3.052;VarDP=25 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:15,10,0:25:99:0|1:1634976_C_CT:375,0,600,420,630,1050:1634976:5,10,5,5 +chrX 1635036 . G . . END=1635036 GT:DP:GQ:MIN_DP:PL 0/0:24:66:24:0,66,990 +chrX 1635037 . G T, 367.64 . AS_QUALapprox=|375|0;AS_VarDP=15|10|0;BaseQRankSum=0.120;DP=25;MQRankSum=-2.821;QUALapprox=375;RAW_GT_COUNT=0,1,0;RAW_MQandDP=76156,25;ReadPosRankSum=-3.082;VarDP=25 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:15,10,0:25:99:0|1:1634976_C_CT:375,0,600,420,630,1050:1634976:5,10,5,5 +chrX 1635038 . G . . END=1635123 GT:DP:GQ:MIN_DP:PL 0/0:30:46:30:0,46,684 +chrX 1635124 . A G, 602.64 . AS_QUALapprox=|610|0;AS_VarDP=16|25|0;BaseQRankSum=-1.309;DP=41;MQRankSum=-1.795;QUALapprox=610;RAW_GT_COUNT=0,1,0;RAW_MQandDP=121838,41;ReadPosRankSum=2.888;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:16,25,0:41:99:610,0,389,658,463,1121:6,10,12,13 +chrX 1635125 . C . . END=1635140 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,106,1266 +chrX 1635141 . A AT, 160.60 . AS_QUALapprox=|168|0;AS_VarDP=25|12|0;BaseQRankSum=1.983;DP=49;MQRankSum=1.080;QUALapprox=168;RAW_GT_COUNT=0,1,0;RAW_MQandDP=150366,49;ReadPosRankSum=-0.292;VarDP=37 GT:AD:DP:GQ:PL:SB 0/1:25,12,0:37:99:168,0,495,242,531,773:11,14,7,5 +chrX 1635142 . T . . END=1635157 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,114,1710 +chrX 1635158 . G . . END=1635158 GT:DP:GQ:MIN_DP:PL 0/0:52:0:52:0,0,1239 +chrX 1635159 . T . . END=1635275 GT:DP:GQ:MIN_DP:PL 0/0:55:26:49:0,26,1224 +chrX 1635276 . G A, 631.64 . AS_QUALapprox=|639|0;AS_VarDP=28|24|0;BaseQRankSum=2.108;DP=54;MQRankSum=-0.749;QUALapprox=639;RAW_GT_COUNT=0,1,0;RAW_MQandDP=188792,54;ReadPosRankSum=-0.542;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:28,24,0:52:99:639,0,667,722,739,1461:12,16,11,13 +chrX 1635277 . C . . END=1635962 GT:DP:GQ:MIN_DP:PL 0/0:56:81:56:0,81,1430 +chrX 1635963 . C CTTTT, 667.60 . AS_QUALapprox=|675|0;AS_VarDP=30|20|0;BaseQRankSum=-0.380;DP=64;MQRankSum=0.857;QUALapprox=675;RAW_GT_COUNT=0,1,0;RAW_MQandDP=229716,64;ReadPosRankSum=-0.030;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:30,20,0:50:99:675,0,1135,766,1194,1961:16,14,13,7 +chrX 1635964 . T . . END=1635976 GT:DP:GQ:MIN_DP:PL 0/0:73:99:73:0,120,1800 +chrX 1635977 . G . . END=1635978 GT:DP:GQ:MIN_DP:PL 0/0:62:0:62:0,0,1473 +chrX 1635979 . A . . END=1635979 GT:DP:GQ:MIN_DP:PL 0/0:58:34:58:0,34,1506 +chrX 1635980 . G . . END=1635980 GT:DP:GQ:MIN_DP:PL 0/0:60:6:60:0,6,1547 +chrX 1635981 . A . . END=1636055 GT:DP:GQ:MIN_DP:PL 0/0:42:85:42:0,85,1147 +chrX 1636056 . T C, 249.64 . AS_QUALapprox=|257|0;AS_VarDP=24|11|0;BaseQRankSum=-0.806;DP=35;MQRankSum=0.000;QUALapprox=257;RAW_GT_COUNT=0,1,0;RAW_MQandDP=126000,35;ReadPosRankSum=-0.835;VarDP=35 GT:AD:DP:GQ:PL:SB 0/1:24,11,0:35:99:257,0,709,329,742,1071:8,16,5,6 +chrX 1636057 . G . . END=1636566 GT:DP:GQ:MIN_DP:PL 0/0:55:97:55:0,97,1167 +chrX 1636567 . TG T, 963.60 . AS_QUALapprox=|971|0;AS_VarDP=23|28|0;BaseQRankSum=2.318;DP=55;MQRankSum=0.000;QUALapprox=971;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=0.663;VarDP=51 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,28,0:51:99:0|1:1636567_TG_T:971,0,737,1041,821,1862:1636567:12,11,11,17 +chrX 1636569 . T . . END=1636569 GT:DP:GQ:MIN_DP:PL 0/0:53:0:53:0,0,0 +chrX 1636570 . G . . END=1636912 GT:DP:GQ:MIN_DP:PL 0/0:52:73:52:0,73,1311 +chrX 1636913 . C G, 475.64 . AS_QUALapprox=|483|0;AS_VarDP=25|19|0;BaseQRankSum=1.206;DP=44;MQRankSum=1.350;QUALapprox=483;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147734,44;ReadPosRankSum=-1.707;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:25,19,0:44:99:483,0,627,557,684,1241:13,12,7,12 +chrX 1636914 . T . . END=1636993 GT:DP:GQ:MIN_DP:PL 0/0:37:50:37:0,50,790 +chrX 1636994 . C . . END=1636994 GT:DP:GQ:MIN_DP:PL 0/0:24:3:24:0,3,675 +chrX 1636995 . T . . END=1637005 GT:DP:GQ:MIN_DP:PL 0/0:23:31:22:0,31,655 +chrX 1637006 . G . . END=1637006 GT:DP:GQ:MIN_DP:PL 0/0:19:0:19:0,0,382 +chrX 1637007 . G . . END=1637009 GT:DP:GQ:MIN_DP:PL 0/0:20:25:20:0,25,616 +chrX 1637010 . C . . END=1637010 GT:DP:GQ:MIN_DP:PL 0/0:18:19:18:0,19,526 +chrX 1637011 . A . . END=1637036 GT:DP:GQ:MIN_DP:PL 0/0:16:34:15:0,34,442 +chrX 1637037 . A . . END=1637037 GT:DP:GQ:MIN_DP:PL 0/0:13:14:13:0,14,342 +chrX 1637038 . T . . END=1637050 GT:DP:GQ:MIN_DP:PL 0/0:15:20:13:0,20,358 +chrX 1637051 . C . . END=1637051 GT:DP:GQ:MIN_DP:PL 0/0:15:16:15:0,16,383 +chrX 1637052 . A . . END=1637059 GT:DP:GQ:MIN_DP:PL 0/0:14:39:14:0,39,432 +chrX 1637060 . A . . END=1637060 GT:DP:GQ:MIN_DP:PL 0/0:14:17:14:0,17,397 +chrX 1637061 . T . . END=1637083 GT:DP:GQ:MIN_DP:PL 0/0:15:20:13:0,20,387 +chrX 1637084 . A . . END=1637084 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,0 +chrX 1637085 . G . . END=1637087 GT:DP:GQ:MIN_DP:PL 0/0:15:36:15:0,36,540 +chrX 1637088 . A . . END=1637088 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,0 +chrX 1637089 . A G, 215.97 . AS_QUALapprox=|230|0;AS_VarDP=0|6|0;DP=6;QUALapprox=230;RAW_GT_COUNT=0,0,1;RAW_MQandDP=10896,6;VarDP=6 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,6,0:6:18:0|1:1637089_A_G:230,18,0,230,18,230:1637089:0,0,2,4 +chrX 1637090 . G . . END=1637093 GT:DP:GQ:MIN_DP:PL 0/0:5:3:5:0,3,45 +chrX 1637094 . T C, 190.96 . AS_QUALapprox=|205|0;AS_VarDP=0|5|0;DP=5;QUALapprox=205;RAW_GT_COUNT=0,0,1;RAW_MQandDP=10455,5;VarDP=5 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,5,0:5:15:0|1:1637089_A_G:205,15,0,205,15,205:1637089:0,0,1,4 +chrX 1637095 . G A, 156.13 . AS_QUALapprox=|170|0;AS_VarDP=0|4|0;DP=4;QUALapprox=170;RAW_GT_COUNT=0,0,1;RAW_MQandDP=8606,4;VarDP=4 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,4,0:4:12:0|1:1637089_A_G:170,12,0,170,12,170:1637089:0,0,0,4 +chrX 1637096 . T . . END=1637137 GT:DP:GQ:MIN_DP:PL 0/0:13:24:11:0,24,338 +chrX 1637138 . C . . END=1637138 GT:DP:GQ:MIN_DP:PL 0/0:12:0:12:0,0,0 +chrX 1637139 . G . . END=1637173 GT:DP:GQ:MIN_DP:PL 0/0:11:21:9:0,21,303 +chrX 1637174 . C . . END=1639385 GT:DP:GQ:MIN_DP:PL 0/0:0:0:0:0,0,0 +chrX 1639386 . A T, 78.31 . AS_QUALapprox=|90|0;AS_VarDP=0|2|0;DP=2;QUALapprox=90;RAW_GT_COUNT=0,0,1;RAW_MQandDP=2384,2;VarDP=2 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,2,0:2:6:0|1:1639386_A_T:90,6,0,90,6,90:1639386:0,0,2,0 +chrX 1639387 . G . . END=1639389 GT:DP:GQ:MIN_DP:PL 0/0:2:6:2:0,6,70 +chrX 1639390 . A G, 78.31 . AS_QUALapprox=|90|0;AS_VarDP=0|2|0;DP=2;QUALapprox=90;RAW_GT_COUNT=0,0,1;RAW_MQandDP=2384,2;VarDP=2 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,2,0:2:6:0|1:1639386_A_T:90,6,0,90,6,90:1639386:0,0,2,0 +chrX 1639391 . A . . END=1639395 GT:DP:GQ:MIN_DP:PL 0/0:2:6:2:0,6,49 +chrX 1639396 . T A, 78.31 . AS_QUALapprox=|90|0;AS_VarDP=0|2|0;DP=2;QUALapprox=90;RAW_GT_COUNT=0,0,1;RAW_MQandDP=2384,2;VarDP=2 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,2,0:2:6:0|1:1639386_A_T:90,6,0,90,6,90:1639386:0,0,2,0 +chrX 1639397 . G . . END=1640462 GT:DP:GQ:MIN_DP:PL 0/0:0:0:0:0,0,0 +chrX 1640463 . G . . END=1640463 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,233 +chrX 1640464 . A . . END=1640464 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,199 +chrX 1640465 . C . . END=1640476 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,223 +chrX 1640477 . T . . END=1640477 GT:DP:GQ:MIN_DP:PL 0/0:9:2:9:0,2,243 +chrX 1640478 . C . . END=1640479 GT:DP:GQ:MIN_DP:PL 0/0:10:30:10:0,30,317 +chrX 1640480 . C . . END=1640480 GT:DP:GQ:MIN_DP:PL 0/0:10:5:10:0,5,288 +chrX 1640481 . C . . END=1640567 GT:DP:GQ:MIN_DP:PL 0/0:14:30:12:0,30,338 +chrX 1640568 . A G, 26.64 . AS_QUALapprox=|34|0;AS_VarDP=12|3|0;BaseQRankSum=-1.098;DP=16;MQRankSum=0.943;QUALapprox=34;RAW_GT_COUNT=0,1,0;RAW_MQandDP=27640,16;ReadPosRankSum=1.372;VarDP=15 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:12,3,0:15:34:0|1:1640568_A_G:34,0,465,70,474,544:1640568:8,4,3,0 +chrX 1640569 . T . . END=1640595 GT:DP:GQ:MIN_DP:PL 0/0:13:24:13:0,24,372 +chrX 1640596 . T C, 251.64 . AS_QUALapprox=|259|0;AS_VarDP=3|10|0;BaseQRankSum=0.310;DP=14;MQRankSum=-0.597;QUALapprox=259;RAW_GT_COUNT=0,1,0;RAW_MQandDP=25083,14;ReadPosRankSum=-1.608;VarDP=13 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:3,10,0:13:90:1|0:1640568_A_G:259,0,90,268,120,387:1640568:3,0,8,2 +chrX 1640597 . G . . END=1640613 GT:DP:GQ:MIN_DP:PL 0/0:12:21:10:0,21,315 +chrX 1640614 . G . . END=1640614 GT:DP:GQ:MIN_DP:PL 0/0:9:13:9:0,13,244 +chrX 1640615 . T . . END=1640615 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,315 +chrX 1640616 . G . . END=1640884 GT:DP:GQ:MIN_DP:PL 0/0:0:0:0:0,0,0 +chrX 1640885 . A . . END=1640897 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,243 +chrX 1640898 . A G, 198.64 . AS_QUALapprox=|206|0;AS_VarDP=2|7|0;BaseQRankSum=-0.282;DP=9;MQRankSum=-0.812;QUALapprox=206;RAW_GT_COUNT=0,1,0;RAW_MQandDP=13603,9;ReadPosRankSum=-1.593;VarDP=9 GT:AD:DP:GQ:PL:SB 0/1:2,7,0:9:42:206,0,42,212,64,276:2,0,7,0 +chrX 1640899 . T . . END=1640924 GT:DP:GQ:MIN_DP:PL 0/0:10:27:9:0,27,303 +chrX 1640925 . A . . END=1640926 GT:DP:GQ:MIN_DP:PL 0/0:10:0:10:0,0,143 +chrX 1640927 . G . . END=1640938 GT:DP:GQ:MIN_DP:PL 0/0:10:27:9:0,27,303 +chrX 1640939 . T . . END=1640939 GT:DP:GQ:MIN_DP:PL 0/0:10:5:10:0,5,288 +chrX 1640940 . C . . END=1640950 GT:DP:GQ:MIN_DP:PL 0/0:10:27:9:0,27,286 +chrX 1640951 . A . . END=1640951 GT:DP:GQ:MIN_DP:PL 0/0:10:16:10:0,16,299 +chrX 1640952 . T . . END=1640960 GT:DP:GQ:MIN_DP:PL 0/0:10:27:10:0,27,282 +chrX 1640961 . T . . END=1640961 GT:DP:GQ:MIN_DP:PL 0/0:10:5:10:0,5,247 +chrX 1640962 . G . . END=1640968 GT:DP:GQ:MIN_DP:PL 0/0:10:21:10:0,21,315 +chrX 1640969 . C . . END=1640969 GT:DP:GQ:MIN_DP:PL 0/0:9:0:9:0,0,174 +chrX 1640970 . T . . END=1640970 GT:DP:GQ:MIN_DP:PL 0/0:9:27:9:0,27,303 +chrX 1640971 . C . . END=1640971 GT:DP:GQ:MIN_DP:PL 0/0:9:0:9:0,0,174 +chrX 1640972 . T . . END=1640987 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,243 +chrX 1640988 . C . . END=1641314 GT:DP:GQ:MIN_DP:PL 0/0:0:0:0:0,0,0 +chrX 1641315 . A . . END=1641315 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,243 +chrX 1641316 . C . . END=1641316 GT:DP:GQ:MIN_DP:PL 0/0:7:0:7:0,0,174 +chrX 1641317 . C . . END=1641327 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,223 +chrX 1641328 . A . . END=1641330 GT:DP:GQ:MIN_DP:PL 0/0:7:0:7:0,0,125 +chrX 1641331 . C . . END=1641333 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,233 +chrX 1641334 . T . . END=1641334 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,0 +chrX 1641335 . A . . END=1641338 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,233 +chrX 1641339 . T . . END=1641339 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,0 +chrX 1641340 . G . . END=1641343 GT:DP:GQ:MIN_DP:PL 0/0:9:24:9:0,24,278 +chrX 1641344 . A . . END=1641344 GT:DP:GQ:MIN_DP:PL 0/0:9:0:9:0,0,174 +chrX 1641345 . C . . END=1641351 GT:DP:GQ:MIN_DP:PL 0/0:10:27:9:0,27,282 +chrX 1641352 . T . . END=1641352 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,0 +chrX 1641353 . C . . END=1641354 GT:DP:GQ:MIN_DP:PL 0/0:12:36:12:0,36,397 +chrX 1641355 . G . . END=1641355 GT:DP:GQ:MIN_DP:PL 0/0:12:0:12:0,0,0 +chrX 1641356 . T . . END=1641361 GT:DP:GQ:MIN_DP:PL 0/0:16:42:16:0,42,466 +chrX 1641362 . T A, 124.13 . AS_QUALapprox=|138|0;AS_VarDP=0|4|0;DP=4;QUALapprox=138;RAW_GT_COUNT=0,0,1;RAW_MQandDP=9733,4;VarDP=4 GT:AD:DP:GQ:PL:SB 1/1:0,4,0:4:12:138,12,0,138,12,138:0,0,2,2 +chrX 1641363 . G . . END=1641379 GT:DP:GQ:MIN_DP:PL 0/0:5:9:5:0,9,104 +chrX 1641380 . A . . END=1641420 GT:DP:GQ:MIN_DP:PL 0/0:10:24:8:0,24,248 +chrX 1641421 . T C, 185.64 . AS_QUALapprox=|193|0;AS_VarDP=15|10|0;BaseQRankSum=-1.087;DP=25;MQRankSum=1.523;QUALapprox=193;RAW_GT_COUNT=0,1,0;RAW_MQandDP=83102,25;ReadPosRankSum=0.083;VarDP=25 GT:AD:DP:GQ:PL:SB 0/1:15,10,0:25:99:193,0,397,238,426,664:8,7,4,6 +chrX 1641422 . G . . END=1641499 GT:DP:GQ:MIN_DP:PL 0/0:39:60:39:0,60,695 +chrX 1641500 . G A, 588.64 . AS_QUALapprox=|596|0;AS_VarDP=26|25|0;BaseQRankSum=-1.017;DP=53;MQRankSum=1.020;QUALapprox=596;RAW_GT_COUNT=0,1,0;RAW_MQandDP=189409,53;ReadPosRankSum=-0.434;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:26,25,0:51:99:596,0,677,674,751,1425:13,13,15,10 +chrX 1641501 . G . . END=1641669 GT:DP:GQ:MIN_DP:PL 0/0:56:70:56:0,70,1382 +chrX 1641670 . A . . END=1641670 GT:DP:GQ:MIN_DP:PL 0/0:50:16:50:0,16,1229 +chrX 1641671 . T . . END=1642660 GT:DP:GQ:MIN_DP:PL 0/0:54:25:27:0,25,659 +chrX 1642661 . G C, 702.64 . AS_QUALapprox=|710|0;AS_VarDP=28|27|0;BaseQRankSum=1.238;DP=56;MQRankSum=0.000;QUALapprox=710;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-0.244;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:28,27,0:55:99:710,0,674,792,755,1547:13,15,16,11 +chrX 1642662 . T . . END=1643459 GT:DP:GQ:MIN_DP:PL 0/0:53:63:53:0,63,1285 +chrX 1643460 . C T, 972.64 . AS_QUALapprox=|980|0;AS_VarDP=37|35|0;BaseQRankSum=1.710;DP=75;MQRankSum=0.000;QUALapprox=980;RAW_GT_COUNT=0,1,0;RAW_MQandDP=270000,75;ReadPosRankSum=-0.947;VarDP=72 GT:AD:DP:GQ:PL:SB 0/1:37,35,0:72:99:980,0,984,1091,1089,2180:16,21,22,13 +chrX 1643461 . T . . END=1643664 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1643665 . A G, 885.64 . AS_QUALapprox=|893|0;AS_VarDP=31|32|0;BaseQRankSum=1.464;DP=65;MQRankSum=0.000;QUALapprox=893;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=-1.410;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:31,32,0:63:99:893,0,803,986,900,1886:12,19,11,21 +chrX 1643666 . A . . END=1643995 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,118,1713 +chrX 1643996 . C T, 823.64 . AS_QUALapprox=|831|0;AS_VarDP=34|30|0;BaseQRankSum=0.759;DP=66;MQRankSum=0.000;QUALapprox=831;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=-0.525;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:34,30,0:64:99:831,0,920,933,1010,1943:21,13,12,18 +chrX 1643997 . G . . END=1644211 GT:DP:GQ:MIN_DP:PL 0/0:61:48:61:0,48,1800 +chrX 1644212 . G . . END=1644215 GT:DP:GQ:MIN_DP:PL 0/0:65:0:65:0,0,1552 +chrX 1644216 . A . . END=1644216 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 1644217 . A . . END=1644218 GT:DP:GQ:MIN_DP:PL 0/0:67:0:67:0,0,1731 +chrX 1644219 . T TTTATTA,TTTATTATTA, 1559.03 . AS_QUALapprox=|284|1573|0;AS_VarDP=0|0|34|0;DP=68;QUALapprox=1573;RAW_GT_COUNT=0,0,1;RAW_MQandDP=243136,68;VarDP=34 GT:AD:DP:GQ:PL:SB 2/2:0,0,34,0:34:99:1573,1361,1289,106,101,0,1480,1338,107,1433:0,0,14,20 +chrX 1644220 . T . . END=1644388 GT:DP:GQ:MIN_DP:PL 0/0:67:51:67:0,51,1620 +chrX 1644389 . T C, 588.64 . AS_QUALapprox=|596|0;AS_VarDP=28|23|0;BaseQRankSum=-1.477;DP=51;MQRankSum=0.000;QUALapprox=596;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-0.104;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:28,23,0:51:99:596,0,800,680,869,1549:15,13,13,10 +chrX 1644390 . G . . END=1645138 GT:DP:GQ:MIN_DP:PL 0/0:55:61:55:0,61,842 +chrX 1645139 . A AT, 63.60 . AS_QUALapprox=|71|0;AS_VarDP=5|5|0;BaseQRankSum=0.589;DP=24;MQRankSum=0.000;QUALapprox=71;RAW_GT_COUNT=0,1,0;RAW_MQandDP=86400,24;ReadPosRankSum=-0.700;VarDP=10 GT:AD:DP:GQ:PL:SB 0/1:5,5,0:10:71:71,0,72,86,87,174:3,2,3,2 +chrX 1645140 . T . . END=1645402 GT:DP:GQ:MIN_DP:PL 0/0:50:43:50:0,43,843 +chrX 1645403 . TTG T, 218.60 . AS_QUALapprox=|226|0;AS_VarDP=31|11|0;BaseQRankSum=2.041;DP=48;MQRankSum=0.650;QUALapprox=226;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172225,48;ReadPosRankSum=0.574;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:31,11,0:42:99:226,0,1101,319,1134,1453:18,13,7,4 +chrX 1645406 . T . . END=1645419 GT:DP:GQ:MIN_DP:PL 0/0:49:58:49:0,58,1517 +chrX 1645420 . G . . END=1645420 GT:DP:GQ:MIN_DP:PL 0/0:43:10:43:0,10,1076 +chrX 1645421 . A . . END=1645492 GT:DP:GQ:MIN_DP:PL 0/0:43:89:43:0,89,1110 +chrX 1645493 . T C, 521.64 . AS_QUALapprox=|529|0;AS_VarDP=25|20|0;BaseQRankSum=1.047;DP=46;MQRankSum=0.000;QUALapprox=529;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=1.394;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:25,20,0:45:99:529,0,664,604,724,1328:11,14,12,8 +chrX 1645494 . G . . END=1645684 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,105,1380 +chrX 1645685 . A G, 623.64 . AS_QUALapprox=|631|0;AS_VarDP=32|24|0;BaseQRankSum=1.507;DP=58;MQRankSum=-1.119;QUALapprox=631;RAW_GT_COUNT=0,1,0;RAW_MQandDP=206800,58;ReadPosRankSum=-0.522;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:32,24,0:56:99:631,0,864,727,936,1663:15,17,8,16 +chrX 1645686 . G . . END=1646080 GT:DP:GQ:MIN_DP:PL 0/0:48:77:48:0,77,1140 +chrX 1646081 . G C, 1424.06 . AS_QUALapprox=|1438|0;AS_VarDP=0|47|0;DP=48;QUALapprox=1438;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1438,140,0,1438,140,1438:0,0,30,17 +chrX 1646082 . C . . END=1646212 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1646213 . T TC, 644.60 . AS_QUALapprox=|652|0;AS_VarDP=29|25|0;BaseQRankSum=0.550;DP=59;MQRankSum=0.000;QUALapprox=652;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=0.113;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:29,25,0:54:99:652,0,806,740,881,1621:17,12,18,7 +chrX 1646214 . C . . END=1646311 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1646312 . T C, 680.64 . AS_QUALapprox=|688|0;AS_VarDP=26|26|0;BaseQRankSum=0.162;DP=56;MQRankSum=0.000;QUALapprox=688;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=0.778;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:26,26,0:52:99:688,0,657,766,735,1501:18,8,13,13 +chrX 1646313 . A . . END=1646441 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 1646442 . T C, 924.64 . AS_QUALapprox=|932|0;AS_VarDP=27|34|0;BaseQRankSum=-0.434;DP=62;MQRankSum=0.000;QUALapprox=932;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=1.721;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:27,34,0:61:99:932,0,726,1014,827,1841:9,18,14,20 +chrX 1646443 . T . . END=1646509 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 1646510 . T C, 758.64 . AS_QUALapprox=|766|0;AS_VarDP=30|27|0;BaseQRankSum=-0.977;DP=58;MQRankSum=0.000;QUALapprox=766;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-0.384;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:30,27,0:57:99:766,0,833,857,914,1771:12,18,11,16 +chrX 1646511 . C . . END=1646548 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,116,1653 +chrX 1646549 . T C, 618.64 . AS_QUALapprox=|626|0;AS_VarDP=30|24|0;BaseQRankSum=-0.280;DP=56;MQRankSum=0.000;QUALapprox=626;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-0.427;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:30,24,0:54:99:626,0,801,717,873,1589:15,15,12,12 +chrX 1646550 . G . . END=1646657 GT:DP:GQ:MIN_DP:PL 0/0:57:96:57:0,96,1271 +chrX 1646658 . CTTTCT C, 311.60 . AS_QUALapprox=|319|0;AS_VarDP=23|17|0;BaseQRankSum=1.043;DP=47;MQRankSum=0.000;QUALapprox=319;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=1.527;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:23,17,0:40:99:319,0,769,388,820,1208:14,9,6,11 +chrX 1646664 . T . . END=1646717 GT:DP:GQ:MIN_DP:PL 0/0:41:80:41:0,80,1032 +chrX 1646718 . T C, 462.64 . AS_QUALapprox=|470|0;AS_VarDP=19|18|0;BaseQRankSum=-0.563;DP=40;MQRankSum=0.000;QUALapprox=470;RAW_GT_COUNT=0,1,0;RAW_MQandDP=144000,40;ReadPosRankSum=-0.365;VarDP=37 GT:AD:DP:GQ:PL:SB 0/1:19,18,0:37:99:470,0,530,527,583,1110:10,9,8,10 +chrX 1646719 . G . . END=1646957 GT:DP:GQ:MIN_DP:PL 0/0:55:65:55:0,65,1200 +chrX 1646958 . CTCTT C, 739.60 . AS_QUALapprox=|747|0;AS_VarDP=24|20|0;BaseQRankSum=1.287;DP=58;MQRankSum=-1.534;QUALapprox=747;RAW_GT_COUNT=0,1,0;RAW_MQandDP=207010,58;ReadPosRankSum=0.484;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:24,20,0:44:99:747,0,935,819,996,1815:7,17,11,9 +chrX 1646963 . T . . END=1647069 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1647070 . T C, 503.64 . AS_QUALapprox=|511|0;AS_VarDP=24|24|0;BaseQRankSum=-2.874;DP=49;MQRankSum=0.000;QUALapprox=511;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=0.773;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:24,24,0:48:99:511,0,661,583,731,1314:8,16,12,12 +chrX 1647071 . C . . END=1647116 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,101,1237 +chrX 1647117 . C CTCTT, 713.60 . AS_QUALapprox=|721|0;AS_VarDP=21|19|0;BaseQRankSum=0.962;DP=44;MQRankSum=0.000;QUALapprox=721;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=0.596;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:21,19,0:40:99:721,0,814,785,872,1656:15,6,7,12 +chrX 1647118 . T . . END=1647159 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,120,1562 +chrX 1647160 . CCTTT C, 766.60 . AS_QUALapprox=|774|0;AS_VarDP=22|20|0;BaseQRankSum=1.798;DP=55;MQRankSum=0.000;QUALapprox=774;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=1.235;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:22,20,0:42:99:774,0,863,840,924,1764:15,7,9,11 +chrX 1647165 . C . . END=1647385 GT:DP:GQ:MIN_DP:PL 0/0:51:51:48:0,51,1434 +chrX 1647386 . G A, 864.64 . AS_QUALapprox=|872|0;AS_VarDP=32|33|0;BaseQRankSum=-1.121;DP=65;MQRankSum=0.000;QUALapprox=872;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=-0.446;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:32,33,0:65:99:872,0,862,968,961,1929:13,19,17,16 +chrX 1647387 . C . . END=1647452 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1647453 . C G, 859.64 . AS_QUALapprox=|867|0;AS_VarDP=29|31|0;BaseQRankSum=-0.941;DP=61;MQRankSum=0.000;QUALapprox=867;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=1.273;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:29,31,0:60:99:867,0,818,954,911,1865:13,16,17,14 +chrX 1647454 . T . . END=1647682 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 1647683 . C T, 708.64 . AS_QUALapprox=|716|0;AS_VarDP=37|27|0;BaseQRankSum=-0.819;DP=66;MQRankSum=0.000;QUALapprox=716;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=-0.558;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:37,27,0:64:99:716,0,1068,827,1149,1977:21,16,10,17 +chrX 1647684 . C . . END=1647975 GT:DP:GQ:MIN_DP:PL 0/0:79:99:79:0,120,1800 +chrX 1647976 . T C, 1188.64 . AS_QUALapprox=|1196|0;AS_VarDP=37|44|0;BaseQRankSum=0.538;DP=82;MQRankSum=0.000;QUALapprox=1196;RAW_GT_COUNT=0,1,0;RAW_MQandDP=295200,82;ReadPosRankSum=-0.251;VarDP=81 GT:AD:DP:GQ:PL:SB 0/1:37,44,0:81:99:1196,0,923,1306,1055,2361:24,13,21,23 +chrX 1647977 . C . . END=1648905 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,118,1572 +chrX 1648906 . C CTTTT, 378.60 . AS_QUALapprox=|386|0;AS_VarDP=25|11|0;BaseQRankSum=-0.402;DP=49;MQRankSum=0.000;QUALapprox=386;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=2.113;VarDP=36 GT:AD:DP:GQ:PL:SB 0/1:25,11,0:36:99:386,0,966,462,1000,1461:13,12,4,7 +chrX 1648907 . T . . END=1648952 GT:DP:GQ:MIN_DP:PL 0/0:42:93:42:0,93,1205 +chrX 1648953 . G A, 342.64 . AS_QUALapprox=|350|0;AS_VarDP=29|15|0;BaseQRankSum=-0.636;DP=44;MQRankSum=0.000;QUALapprox=350;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=-1.115;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:29,15,0:44:99:350,0,811,436,856,1292:17,12,3,12 +chrX 1648954 . T . . END=1649350 GT:DP:GQ:MIN_DP:PL 0/0:52:96:52:0,96,1291 +chrX 1649351 . C G, 646.64 . AS_QUALapprox=|654|0;AS_VarDP=29|24|0;BaseQRankSum=1.253;DP=55;MQRankSum=0.000;QUALapprox=654;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-1.278;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:29,24,0:53:99:654,0,787,742,859,1600:21,8,11,13 +chrX 1649352 . T . . END=1649595 GT:DP:GQ:MIN_DP:PL 0/0:51:52:51:0,52,1052 +chrX 1649596 . T . . END=1649596 GT:DP:GQ:MIN_DP:PL 0/0:41:10:41:0,10,1028 +chrX 1649597 . CAAAAA C, 505.60 . AS_QUALapprox=|513|0;AS_VarDP=20|14|0;BaseQRankSum=0.665;DP=48;MQRankSum=0.000;QUALapprox=513;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=-0.880;VarDP=34 GT:AD:DP:GQ:PL:SB 0/1:20,14,0:34:99:513,0,740,573,783,1356:10,10,9,5 +chrX 1649603 . A . . END=1650375 GT:DP:GQ:MIN_DP:PL 0/0:57:48:57:0,48,894 +chrX 1650376 . G A, 555.64 . AS_QUALapprox=|563|0;AS_VarDP=22|22|0;BaseQRankSum=-2.173;DP=49;MQRankSum=0.000;QUALapprox=563;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=0.634;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:22,22,0:44:99:563,0,608,628,674,1302:13,9,13,9 +chrX 1650377 . T . . END=1650490 GT:DP:GQ:MIN_DP:PL 0/0:50:51:50:0,51,1225 +chrX 1650491 . G . . END=1650491 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,1187 +chrX 1650492 . CTTTTTTTTTT C, 474.60 . AS_QUALapprox=|482|0;AS_VarDP=20|15|0;BaseQRankSum=0.065;DP=47;MQRankSum=1.285;QUALapprox=482;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165200,47;ReadPosRankSum=-0.035;VarDP=35 GT:AD:DP:GQ:PL:SB 0/1:20,15,0:35:99:482,0,721,542,767,1309:11,9,8,7 +chrX 1650503 . T . . END=1650521 GT:DP:GQ:MIN_DP:PL 0/0:52:69:52:0,69,1035 +chrX 1650522 . G . . END=1650523 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,749 +chrX 1650524 . G . . END=1650672 GT:DP:GQ:MIN_DP:PL 0/0:41:20:38:0,20,1007 +chrX 1650673 . AT A, 464.60 . AS_QUALapprox=|472|0;AS_VarDP=25|22|0;BaseQRankSum=0.762;DP=57;MQRankSum=0.000;QUALapprox=472;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-0.960;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:25,22,0:47:99:472,0,527,547,593,1140:15,10,11,11 +chrX 1650675 . T . . END=1651099 GT:DP:GQ:MIN_DP:PL 0/0:50:37:46:0,37,1265 +chrX 1651100 . T C, 498.64 . AS_QUALapprox=|506|0;AS_VarDP=19|19|0;BaseQRankSum=-0.785;DP=41;MQRankSum=-1.395;QUALapprox=506;RAW_GT_COUNT=0,1,0;RAW_MQandDP=145364,41;ReadPosRankSum=-0.243;VarDP=38 GT:AD:DP:GQ:PL:SB 0/1:19,19,0:38:99:506,0,516,563,573,1136:10,9,11,8 +chrX 1651101 . G . . END=1651111 GT:DP:GQ:MIN_DP:PL 0/0:37:63:37:0,63,1053 +chrX 1651112 . G GTTT, 597.60 . AS_QUALapprox=|605|0;AS_VarDP=9|21|0;BaseQRankSum=0.923;DP=43;MQRankSum=-1.342;QUALapprox=605;RAW_GT_COUNT=0,1,0;RAW_MQandDP=148564,43;ReadPosRankSum=0.204;VarDP=30 GT:AD:DP:GQ:PL:SB 0/1:9,21,0:30:99:605,0,200,632,263,894:3,6,13,8 +chrX 1651113 . T . . END=1651131 GT:DP:GQ:MIN_DP:PL 0/0:37:51:37:0,51,765 +chrX 1651132 . G . . END=1651132 GT:DP:GQ:MIN_DP:PL 0/0:27:0:27:0,0,700 +chrX 1651133 . A . . END=1651906 GT:DP:GQ:MIN_DP:PL 0/0:61:29:26:0,29,745 +chrX 1651907 . G . . END=1651907 GT:DP:GQ:MIN_DP:PL 0/0:68:0:68:0,0,191 +chrX 1651908 . G . . END=1651936 GT:DP:GQ:MIN_DP:PL 0/0:75:99:75:0,120,1800 +chrX 1651937 . A . . END=1651937 GT:DP:GQ:MIN_DP:PL 0/0:74:0:74:0,0,1381 +chrX 1651938 . A . . END=1651966 GT:DP:GQ:MIN_DP:PL 0/0:80:99:80:0,120,1800 +chrX 1651967 . G . . END=1651967 GT:DP:GQ:MIN_DP:PL 0/0:83:0:83:0,0,1483 +chrX 1651968 . G . . END=1652074 GT:DP:GQ:MIN_DP:PL 0/0:97:45:97:0,45,1800 +chrX 1652075 . C A, 728.64 . AS_QUALapprox=|736|0;AS_VarDP=56|38|0;BaseQRankSum=-2.587;DP=98;MQRankSum=-1.447;QUALapprox=736;RAW_GT_COUNT=0,1,0;RAW_MQandDP=306081,98;ReadPosRankSum=0.863;VarDP=94 GT:AD:DP:GQ:PL:SB 0/1:56,38,0:94:99:736,0,1462,903,1573,2476:31,25,19,19 +chrX 1652076 . C . . END=1652099 GT:DP:GQ:MIN_DP:PL 0/0:102:99:102:0,120,1800 +chrX 1652100 . G . . END=1652100 GT:DP:GQ:MIN_DP:PL 0/0:97:0:97:0,0,2254 +chrX 1652101 . G . . END=1652852 GT:DP:GQ:MIN_DP:PL 0/0:66:85:66:0,85,1478 +chrX 1652853 . A G, 780.64 . AS_QUALapprox=|788|0;AS_VarDP=31|29|0;BaseQRankSum=0.310;DP=61;MQRankSum=-1.001;QUALapprox=788;RAW_GT_COUNT=0,1,0;RAW_MQandDP=217600,61;ReadPosRankSum=1.569;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:31,29,0:60:99:788,0,832,881,920,1800:13,18,16,13 +chrX 1652854 . C . . END=1652882 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1652883 . A G, 823.64 . AS_QUALapprox=|831|0;AS_VarDP=26|31|0;BaseQRankSum=-0.425;DP=59;MQRankSum=-0.881;QUALapprox=831;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208096,59;ReadPosRankSum=-0.160;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:26,31,0:57:99:831,0,693,910,786,1695:11,15,16,15 +chrX 1652884 . G . . END=1653089 GT:DP:GQ:MIN_DP:PL 0/0:59:92:59:0,92,1258 +chrX 1653090 . CA C, 518.60 . AS_QUALapprox=|526|0;AS_VarDP=13|24|0;BaseQRankSum=-0.436;DP=47;MQRankSum=-1.015;QUALapprox=526;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165729,47;ReadPosRankSum=-1.024;VarDP=37 GT:AD:DP:GQ:PL:SB 0/1:13,24,0:37:99:526,0,229,565,301,866:5,8,9,15 +chrX 1653092 . A . . END=1653114 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,115,1518 +chrX 1653115 . TG T, 923.60 . AS_QUALapprox=|931|0;AS_VarDP=22|29|0;BaseQRankSum=1.081;DP=52;MQRankSum=-1.216;QUALapprox=931;RAW_GT_COUNT=0,1,0;RAW_MQandDP=185729,52;ReadPosRankSum=2.064;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:22,29,0:51:99:931,0,667,997,754,1751:10,12,12,17 +chrX 1653117 . G . . END=1653570 GT:DP:GQ:MIN_DP:PL 0/0:54:52:54:0,52,1428 +chrX 1653571 . T C, 655.64 . AS_QUALapprox=|663|0;AS_VarDP=21|26|0;BaseQRankSum=-1.005;DP=50;MQRankSum=0.000;QUALapprox=663;RAW_GT_COUNT=0,1,0;RAW_MQandDP=175729,50;ReadPosRankSum=-0.268;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:21,26,0:47:99:663,0,543,726,620,1346:9,12,12,14 +chrX 1653572 . T . . END=1653591 GT:DP:GQ:MIN_DP:PL 0/0:50:76:50:0,76,1409 +chrX 1653592 . CTTTT C, 763.60 . AS_QUALapprox=|771|0;AS_VarDP=23|21|0;BaseQRankSum=1.774;DP=54;MQRankSum=-0.065;QUALapprox=771;RAW_GT_COUNT=0,1,0;RAW_MQandDP=186726,54;ReadPosRankSum=-0.126;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:23,21,0:44:99:771,0,862,840,926,1766:11,12,8,13 +chrX 1653597 . T . . END=1653832 GT:DP:GQ:MIN_DP:PL 0/0:56:29:47:0,29,1319 +chrX 1653833 . T C, 675.64 . AS_QUALapprox=|683|0;AS_VarDP=25|27|0;BaseQRankSum=-2.177;DP=55;MQRankSum=0.055;QUALapprox=683;RAW_GT_COUNT=0,1,0;RAW_MQandDP=196325,55;ReadPosRankSum=1.897;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:25,27,0:52:99:683,0,703,758,783,1541:10,15,18,9 +chrX 1653834 . G . . END=1653979 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 1653980 . C T, 870.64 . AS_QUALapprox=|878|0;AS_VarDP=41|35|0;BaseQRankSum=-1.695;DP=78;MQRankSum=0.000;QUALapprox=878;RAW_GT_COUNT=0,1,0;RAW_MQandDP=280800,78;ReadPosRankSum=-1.835;VarDP=76 GT:AD:DP:GQ:PL:SB 0/1:41,35,0:76:99:878,0,1117,1001,1222,2223:21,20,17,18 +chrX 1653981 . C . . END=1654142 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 1654143 . A C, 867.64 . AS_QUALapprox=|875|0;AS_VarDP=30|23|0;BaseQRankSum=-0.338;DP=54;MQRankSum=-3.188;QUALapprox=875;RAW_GT_COUNT=0,1,0;RAW_MQandDP=185397,54;ReadPosRankSum=-0.147;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:30,23,0:53:99:0|1:1654143_A_C:875,0,1169,965,1238,2203:1654143:10,20,9,14 +chrX 1654144 . C . . END=1654144 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,120,1800 +chrX 1654145 . G A, 867.64 . AS_QUALapprox=|875|0;AS_VarDP=30|23|0;BaseQRankSum=0.210;DP=54;MQRankSum=-3.188;QUALapprox=875;RAW_GT_COUNT=0,1,0;RAW_MQandDP=185397,54;ReadPosRankSum=0.045;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:30,23,0:53:99:0|1:1654143_A_C:875,0,1169,965,1238,2203:1654143:10,20,9,14 +chrX 1654146 . C . . END=1654368 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,116,1682 +chrX 1654369 . G A, 1185.64 . AS_QUALapprox=|1193|0;AS_VarDP=36|31|0;BaseQRankSum=1.771;DP=67;MQRankSum=0.000;QUALapprox=1193;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=-0.245;VarDP=67 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:36,31,0:67:99:0|1:1654369_G_A:1193,0,1408,1302,1501,2803:1654369:21,15,19,12 +chrX 1654370 . G . . END=1654372 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 1654373 . G A, 1188.64 . AS_QUALapprox=|1196|0;AS_VarDP=35|31|0;BaseQRankSum=3.350;DP=66;MQRankSum=0.000;QUALapprox=1196;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=-0.797;VarDP=66 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:35,31,0:66:99:0|1:1654369_G_A:1196,0,1376,1302,1470,2771:1654369:21,14,19,12 +chrX 1654374 . A . . END=1654381 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1654382 . G A, 1146.64 . AS_QUALapprox=|1154|0;AS_VarDP=35|30|0;BaseQRankSum=2.789;DP=66;MQRankSum=0.000;QUALapprox=1154;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=-0.344;VarDP=65 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:35,30,0:65:99:0|1:1654369_G_A:1154,0,1359,1260,1449,2709:1654369:20,15,18,12 +chrX 1654383 . C . . END=1654528 GT:DP:GQ:MIN_DP:PL 0/0:45:89:45:0,89,961 +chrX 1654529 . T C, 309.64 . AS_QUALapprox=|317|0;AS_VarDP=22|13|0;BaseQRankSum=-1.610;DP=36;MQRankSum=0.000;QUALapprox=317;RAW_GT_COUNT=0,1,0;RAW_MQandDP=129600,36;ReadPosRankSum=-0.034;VarDP=35 GT:AD:DP:GQ:PL:SB 0/1:22,13,0:35:99:317,0,649,383,688,1070:10,12,6,7 +chrX 1654530 . G . . END=1654609 GT:DP:GQ:MIN_DP:PL 0/0:32:29:29:0,29,731 +chrX 1654610 . C CA,CAAAAAAAA, 237.60 . AS_QUALapprox=|0|245|0;AS_VarDP=18|0|9|0;BaseQRankSum=0.953;DP=47;MQRankSum=-1.983;QUALapprox=245;RAW_GT_COUNT=0,1,0;RAW_MQandDP=163200,47;ReadPosRankSum=-2.310;VarDP=27 GT:AD:DP:GQ:PL:SB 0/2:18,0,9,0:27:99:245,287,630,0,355,599,297,655,511,778:15,3,1,8 +chrX 1654611 . A . . END=1655233 GT:DP:GQ:MIN_DP:PL 0/0:62:56:62:0,56,1350 +chrX 1655234 . T C, 676.64 . AS_QUALapprox=|684|0;AS_VarDP=40|28|0;BaseQRankSum=0.567;DP=73;MQRankSum=0.000;QUALapprox=684;RAW_GT_COUNT=0,1,0;RAW_MQandDP=262800,73;ReadPosRankSum=-1.932;VarDP=68 GT:AD:DP:GQ:PL:SB 0/1:40,28,0:68:99:684,0,1056,804,1140,1944:20,20,11,17 +chrX 1655235 . G . . END=1655447 GT:DP:GQ:MIN_DP:PL 0/0:78:99:78:0,120,1800 +chrX 1655448 . C A, 830.64 . AS_QUALapprox=|838|0;AS_VarDP=25|31|0;BaseQRankSum=1.085;DP=59;MQRankSum=0.000;QUALapprox=838;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-0.008;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:25,31,0:56:99:838,0,561,911,655,1566:10,15,17,14 +chrX 1655449 . C . . END=1655558 GT:DP:GQ:MIN_DP:PL 0/0:55:83:55:0,83,1446 +chrX 1655559 . G GT, 564.60 . AS_QUALapprox=|572|0;AS_VarDP=18|29|0;BaseQRankSum=-2.371;DP=59;MQRankSum=0.000;QUALapprox=572;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-0.427;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:18,29,0:47:99:572,0,313,626,400,1026:11,7,14,15 +chrX 1655560 . T . . END=1655799 GT:DP:GQ:MIN_DP:PL 0/0:53:52:53:0,52,1480 +chrX 1655800 . A G, 564.64 . AS_QUALapprox=|572|0;AS_VarDP=23|23|0;BaseQRankSum=-1.178;DP=50;MQRankSum=0.000;QUALapprox=572;RAW_GT_COUNT=0,1,0;RAW_MQandDP=177696,50;ReadPosRankSum=-0.385;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:23,23,0:46:99:572,0,632,641,700,1341:14,9,12,11 +chrX 1655801 . G . . END=1656503 GT:DP:GQ:MIN_DP:PL 0/0:51:89:51:0,89,1106 +chrX 1656504 . TAC T, 816.60 . AS_QUALapprox=|824|0;AS_VarDP=20|23|0;BaseQRankSum=-0.663;DP=46;MQRankSum=0.000;QUALapprox=824;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=-0.695;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:20,23,0:43:99:824,0,675,884,745,1629:10,10,10,13 +chrX 1656507 . A . . END=1656651 GT:DP:GQ:MIN_DP:PL 0/0:35:30:33:0,30,968 +chrX 1656652 . CGTGTGTACACACATATATACACGTGTGTACACGCATATATACACGT C, 697.60 . AS_QUALapprox=|705|0;AS_VarDP=20|19|0;BaseQRankSum=-0.100;DP=40;MQRankSum=0.000;QUALapprox=705;RAW_GT_COUNT=0,1,0;RAW_MQandDP=144000,40;ReadPosRankSum=-0.028;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:20,19,0:39:99:705,0,780,765,837,1603:8,12,13,6 +chrX 1656699 . G . . END=1656781 GT:DP:GQ:MIN_DP:PL 0/0:33:58:33:0,58,900 +chrX 1656782 . A ATG, 684.60 . AS_QUALapprox=|692|0;AS_VarDP=11|22|0;BaseQRankSum=-0.658;DP=38;MQRankSum=-0.643;QUALapprox=692;RAW_GT_COUNT=0,1,0;RAW_MQandDP=134225,38;ReadPosRankSum=1.108;VarDP=33 GT:AD:DP:GQ:PL:SB 0/1:11,22,0:33:99:692,0,308,725,374,1099:7,4,13,9 +chrX 1656783 . T . . END=1657196 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,101,1270 +chrX 1657197 . G C, 764.64 . AS_QUALapprox=|772|0;AS_VarDP=28|29|0;BaseQRankSum=1.267;DP=61;MQRankSum=-1.377;QUALapprox=772;RAW_GT_COUNT=0,1,0;RAW_MQandDP=218149,61;ReadPosRankSum=-1.166;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:28,29,0:57:99:772,0,697,856,784,1640:12,16,16,13 +chrX 1657198 . T . . END=1657988 GT:DP:GQ:MIN_DP:PL 0/0:51:88:51:0,88,1246 +chrX 1657989 . G A, 849.64 . AS_QUALapprox=|857|0;AS_VarDP=24|31|0;BaseQRankSum=-0.549;DP=56;MQRankSum=0.000;QUALapprox=857;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-0.526;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:24,31,0:55:99:857,0,649,930,742,1672:11,13,16,15 +chrX 1657990 . G . . END=1658064 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 1658065 . C G, 675.64 . AS_QUALapprox=|683|0;AS_VarDP=40|27|0;BaseQRankSum=0.959;DP=69;MQRankSum=0.000;QUALapprox=683;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=-0.819;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:40,27,0:67:99:683,0,1073,803,1154,1956:19,21,14,13 +chrX 1658066 . G . . END=1658112 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1658113 . G A, 562.64 . AS_QUALapprox=|570|0;AS_VarDP=36|22|0;BaseQRankSum=1.060;DP=58;MQRankSum=0.000;QUALapprox=570;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-0.441;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:36,22,0:58:99:570,0,1007,678,1073,1752:19,17,9,13 +chrX 1658114 . T . . END=1658203 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1658204 . C G, 861.64 . AS_QUALapprox=|869|0;AS_VarDP=30|24|0;BaseQRankSum=-0.736;DP=55;MQRankSum=0.000;QUALapprox=869;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-0.778;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:30,24,0:54:99:0|1:1658204_C_G:869,0,1155,960,1227,2187:1658204:17,13,10,14 +chrX 1658205 . C . . END=1658213 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 1658214 . G C, 977.64 . AS_QUALapprox=|985|0;AS_VarDP=30|28|0;BaseQRankSum=-0.288;DP=61;MQRankSum=0.000;QUALapprox=985;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-1.097;VarDP=58 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:30,28,0:58:99:0|1:1658204_C_G:985,0,1143,1075,1228,2303:1658204:17,13,12,16 +chrX 1658215 . A . . END=1658539 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1658540 . G GT, 2566.03 . AS_QUALapprox=|2580|0;AS_VarDP=0|69|0;DP=70;QUALapprox=2580;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;VarDP=69 GT:AD:DP:GQ:PL:SB 1/1:0,69,0:69:99:2580,208,0,2580,208,2580:0,0,27,42 +chrX 1658541 . T . . END=1658561 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 1658562 . TTTTG T, 2526.03 . AS_QUALapprox=|2540|0;AS_VarDP=0|58|0;DP=68;QUALapprox=2540;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;VarDP=58 GT:AD:DP:GQ:PL:SB 1/1:0,58,0:58:99:2540,174,0,2540,174,2540:0,0,22,36 +chrX 1658567 . T . . END=1658604 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 1658605 . A ATACT, 2900.03 . AS_QUALapprox=|2914|0;AS_VarDP=0|65|0;DP=67;QUALapprox=2914;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=65 GT:AD:DP:GQ:PL:SB 1/1:0,65,0:65:99:2914,196,0,2914,196,2914:0,0,28,37 +chrX 1658606 . T . . END=1658632 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 1658633 . T . . END=1658636 GT:DP:GQ:MIN_DP:PL 0/0:67:0:67:0,0,1553 +chrX 1658637 . T . . END=1658645 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,111,1665 +chrX 1658646 . TTC T, 2250.03 . AS_QUALapprox=|2264|0;AS_VarDP=1|54|0;BaseQRankSum=-0.520;DP=65;MQRankSum=-0.210;QUALapprox=2264;RAW_GT_COUNT=0,0,1;RAW_MQandDP=229775,65;ReadPosRankSum=0.706;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:1,54,0:55:99:0|1:1658646_TTC_T:2264,153,0,2266,161,2274:1658646:1,0,30,24 +chrX 1658649 . T . . END=1658656 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,105,1575 +chrX 1658657 . T C, 2409.06 . AS_QUALapprox=|2423|0;AS_VarDP=1|59|0;BaseQRankSum=-0.686;DP=67;MQRankSum=-0.311;QUALapprox=2423;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226523,67;ReadPosRankSum=0.924;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:1,59,0:60:99:0|1:1658646_TTC_T:2423,168,0,2426,176,2433:1658646:1,0,33,26 +chrX 1658658 . T . . END=1658698 GT:DP:GQ:MIN_DP:PL 0/0:46:91:46:0,91,1100 +chrX 1658699 . G C, 636.64 . AS_QUALapprox=|644|0;AS_VarDP=16|24|0;BaseQRankSum=0.496;DP=42;MQRankSum=0.015;QUALapprox=644;RAW_GT_COUNT=0,1,0;RAW_MQandDP=114523,42;ReadPosRankSum=0.691;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:16,24,0:40:99:644,0,397,693,468,1161:6,10,15,9 +chrX 1658700 . T . . END=1658774 GT:DP:GQ:MIN_DP:PL 0/0:44:90:44:0,90,1280 +chrX 1658775 . A G, 1688.06 . AS_QUALapprox=|1702|0;AS_VarDP=0|40|0;DP=44;QUALapprox=1702;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86893,44;VarDP=40 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,40,0:40:99:0|1:1658775_A_G:1702,120,0,1702,120,1702:1658775:0,0,19,21 +chrX 1658776 . T . . END=1658791 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,102,1217 +chrX 1658792 . C T, 1866.06 . AS_QUALapprox=|1880|0;AS_VarDP=0|42|0;DP=43;QUALapprox=1880;RAW_GT_COUNT=0,0,1;RAW_MQandDP=72464,43;VarDP=42 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,42,0:42:99:0|1:1658775_A_G:1880,126,0,1880,126,1880:1658775:0,0,18,24 +chrX 1658793 . G . . END=1658794 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,111,1665 +chrX 1658795 . C T, 646.64 . AS_QUALapprox=|654|0;AS_VarDP=16|23|0;BaseQRankSum=-0.185;DP=41;MQRankSum=-1.655;QUALapprox=654;RAW_GT_COUNT=0,1,0;RAW_MQandDP=65615,41;ReadPosRankSum=1.229;VarDP=39 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:16,23,0:39:99:0|1:1658775_A_G:654,0,414,701,483,1185:1658775:6,10,11,12 +chrX 1658796 . C . . END=1658807 GT:DP:GQ:MIN_DP:PL 0/0:38:80:38:0,80,1086 +chrX 1658808 . C T, 1786.06 . AS_QUALapprox=|1800|0;AS_VarDP=0|40|0;DP=40;QUALapprox=1800;RAW_GT_COUNT=0,0,1;RAW_MQandDP=66777,40;VarDP=40 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,40,0:40:99:0|1:1658775_A_G:1800,120,0,1800,120,1800:1658775:0,0,18,22 +chrX 1658809 . G . . END=1658847 GT:DP:GQ:MIN_DP:PL 0/0:39:93:39:0,93,1252 +chrX 1658848 . T C, 1966.06 . AS_QUALapprox=|1980|0;AS_VarDP=0|44|0;DP=44;QUALapprox=1980;RAW_GT_COUNT=0,0,1;RAW_MQandDP=102679,44;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,44,0:44:99:0|1:1658775_A_G:1980,132,0,1980,132,1980:1658775:0,0,24,20 +chrX 1658849 . G . . END=1658854 GT:DP:GQ:MIN_DP:PL 0/0:43:95:43:0,95,1355 +chrX 1658855 . G C, 1966.06 . AS_QUALapprox=|1980|0;AS_VarDP=0|44|0;DP=44;QUALapprox=1980;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104679,44;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,44,0:44:99:0|1:1658775_A_G:1980,132,0,1980,132,1980:1658775:0,0,24,20 +chrX 1658856 . C . . END=1658857 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,120,1800 +chrX 1658858 . A C, 2001.06 . AS_QUALapprox=|2015|0;AS_VarDP=0|45|0;DP=45;QUALapprox=2015;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108279,45;VarDP=45 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,45,0:45:99:0|1:1658775_A_G:2015,135,0,2015,135,2015:1658775:0,0,24,21 +chrX 1658859 . G . . END=1658921 GT:DP:GQ:MIN_DP:PL 0/0:50:85:50:0,85,1426 +chrX 1658922 . C T, 2036.06 . AS_QUALapprox=|2050|0;AS_VarDP=0|52|0;DP=53;QUALapprox=2050;RAW_GT_COUNT=0,0,1;RAW_MQandDP=164950,53;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,52,0:52:99:0|1:1658775_A_G:2050,156,0,2050,156,2050:1658775:0,0,23,29 +chrX 1658923 . A . . END=1659031 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,118,1776 +chrX 1659032 . C T, 2866.06 . AS_QUALapprox=|2880|0;AS_VarDP=0|64|0;DP=67;QUALapprox=2880;RAW_GT_COUNT=0,0,1;RAW_MQandDP=207190,67;VarDP=64 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,64,0:64:99:0|1:1659032_C_T:2880,193,0,2880,193,2880:1659032:0,0,25,39 +chrX 1659033 . A G, 2866.06 . AS_QUALapprox=|2880|0;AS_VarDP=0|64|0;DP=65;QUALapprox=2880;RAW_GT_COUNT=0,0,1;RAW_MQandDP=199990,65;VarDP=64 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,64,0:64:99:0|1:1659032_C_T:2880,193,0,2880,193,2880:1659032:0,0,25,39 +chrX 1659034 . G . . END=1659053 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 1659054 . A G, 2909.06 . AS_QUALapprox=|2923|0;AS_VarDP=0|67|0;DP=68;QUALapprox=2923;RAW_GT_COUNT=0,0,1;RAW_MQandDP=210790,68;VarDP=67 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,67,0:67:99:0|1:1659032_C_T:2923,202,0,2923,202,2923:1659032:0,0,27,40 +chrX 1659055 . A . . END=1659208 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 1659209 . T C, 2099.06 . AS_QUALapprox=|2113|0;AS_VarDP=0|66|0;DP=70;QUALapprox=2113;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;VarDP=66 GT:AD:DP:GQ:PL:SB 1/1:0,66,0:66:99:2113,197,0,2113,197,2113:0,0,48,18 +chrX 1659210 . C . . END=1659410 GT:DP:GQ:MIN_DP:PL 0/0:74:99:74:0,120,1800 +chrX 1659411 . C CTT, 3444.03 . AS_QUALapprox=|3458|0;AS_VarDP=0|79|0;DP=84;QUALapprox=3458;RAW_GT_COUNT=0,0,1;RAW_MQandDP=302400,84;VarDP=79 GT:AD:DP:GQ:PL:SB 1/1:0,79,0:79:99:3458,237,0,3458,237,3458:0,0,38,41 +chrX 1659412 . T . . END=1659526 GT:DP:GQ:MIN_DP:PL 0/0:84:29:76:0,29,1800 +chrX 1659527 . G A, 1012.64 . AS_QUALapprox=|1020|0;AS_VarDP=32|29|0;BaseQRankSum=-0.119;DP=61;MQRankSum=0.000;QUALapprox=1020;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=1.542;VarDP=61 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:32,29,0:61:99:0|1:1659527_G_A:1020,0,1143,1116,1230,2346:1659527:17,15,10,19 +chrX 1659528 . T . . END=1659542 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1659543 . G C, 2404.06 . AS_QUALapprox=|2418|0;AS_VarDP=1|61|0;BaseQRankSum=2.997;DP=62;MQRankSum=0.000;QUALapprox=2418;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;ReadPosRankSum=1.622;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:1,61,0:62:99:2418,161,0,2421,183,2443:1,0,27,34 +chrX 1659544 . T . . END=1659550 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1659551 . TTGTG T, 1169.60 . AS_QUALapprox=|1177|0;AS_VarDP=28|31|0;BaseQRankSum=-1.518;DP=59;MQRankSum=0.000;QUALapprox=1177;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-0.477;VarDP=59 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,31,0:59:99:0|1:1659527_G_A:1177,0,1062,1261,1155,2416:1659527:15,13,13,18 +chrX 1659556 . T . . END=1659590 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 1659591 . G A, 901.64 . AS_QUALapprox=|909|0;AS_VarDP=24|32|0;BaseQRankSum=1.935;DP=58;MQRankSum=-0.830;QUALapprox=909;RAW_GT_COUNT=0,1,0;RAW_MQandDP=206425,58;ReadPosRankSum=-0.058;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:24,32,0:56:99:909,0,893,981,989,1970:14,10,15,17 +chrX 1659592 . G A, 583.64 . AS_QUALapprox=|591|0;AS_VarDP=33|23|0;BaseQRankSum=-1.258;DP=58;MQRankSum=0.871;QUALapprox=591;RAW_GT_COUNT=0,1,0;RAW_MQandDP=206425,58;ReadPosRankSum=-0.150;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:33,23,0:56:99:591,0,1276,690,1345,2035:16,17,13,10 +chrX 1659593 . A . . END=1659638 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1659639 . G GTT, 2418.03 . AS_QUALapprox=|2432|0;AS_VarDP=2|56|0;BaseQRankSum=2.145;DP=62;MQRankSum=0.000;QUALapprox=2432;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;ReadPosRankSum=-0.107;VarDP=58 GT:AD:DP:GQ:PL:SB 1/1:2,56,0:58:99:2432,125,0,2436,169,2480:2,0,32,24 +chrX 1659640 . T . . END=1659769 GT:DP:GQ:MIN_DP:PL 0/0:62:54:62:0,54,1657 +chrX 1659770 . T C, 818.64 . AS_QUALapprox=|826|0;AS_VarDP=28|31|0;BaseQRankSum=0.249;DP=63;MQRankSum=0.000;QUALapprox=826;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=-0.524;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:28,31,0:59:99:826,0,707,909,800,1708:12,16,14,17 +chrX 1659771 . G . . END=1659810 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1659811 . ATT A, 1321.60 . AS_QUALapprox=|1329|0;AS_VarDP=29|34|0;BaseQRankSum=1.343;DP=65;MQRankSum=0.000;QUALapprox=1329;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=-0.208;VarDP=63 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,34,0:63:99:0|1:1659811_ATT_A:1329,0,1103,1416,1205,2621:1659811:13,16,16,18 +chrX 1659814 . T . . END=1659818 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 1659819 . TTGTG T, 1312.60 . AS_QUALapprox=|1320|0;AS_VarDP=29|34|0;BaseQRankSum=2.274;DP=64;MQRankSum=0.000;QUALapprox=1320;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=0.170;VarDP=63 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,34,0:63:99:0|1:1659811_ATT_A:1320,0,1115,1408,1218,2625:1659811:14,15,15,19 +chrX 1659824 . T . . END=1659878 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,103,1619 +chrX 1659879 . C CTA, 1000.60 . AS_QUALapprox=|1008|0;AS_VarDP=24|28|0;BaseQRankSum=-0.927;DP=58;MQRankSum=0.000;QUALapprox=1008;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-0.505;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:24,28,0:52:99:1008,0,895,1081,978,2059:14,10,10,18 +chrX 1659880 . T . . END=1659946 GT:DP:GQ:MIN_DP:PL 0/0:47:89:47:0,89,1378 +chrX 1659947 . A AG, 476.60 . AS_QUALapprox=|484|0;AS_VarDP=25|19|0;BaseQRankSum=-1.814;DP=46;MQRankSum=0.000;QUALapprox=484;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=0.948;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:25,19,0:44:99:484,0,676,560,733,1292:15,10,5,14 +chrX 1659948 . G . . END=1660848 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,100,1434 +chrX 1660849 . T TAAATATAATAATAAAAATAA, 2474.03 . AS_QUALapprox=|2488|0;AS_VarDP=1|58|0;BaseQRankSum=-0.380;DP=66;MQRankSum=0.000;QUALapprox=2488;RAW_GT_COUNT=0,0,1;RAW_MQandDP=235089,66;ReadPosRankSum=1.147;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:1,58,0:59:99:2488,131,0,2493,175,2537:1,0,32,26 +chrX 1660850 . A . . END=1660880 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 1660881 . A T, 1590.06 . AS_QUALapprox=|1604|0;AS_VarDP=1|50|0;BaseQRankSum=-0.377;DP=53;MQRankSum=0.000;QUALapprox=1604;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;ReadPosRankSum=0.272;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:1,50,0:51:99:1604,118,0,1607,150,1638:1,0,32,18 +chrX 1660882 . A . . END=1660882 GT:DP:GQ:MIN_DP:PL 0/0:74:99:74:0,120,1800 +chrX 1660883 . T . . END=1660883 GT:DP:GQ:MIN_DP:PL 0/0:69:0:69:0,0,1027 +chrX 1660884 . A . . END=1660885 GT:DP:GQ:MIN_DP:PL 0/0:74:99:74:0,120,1800 +chrX 1660886 . T . . END=1660888 GT:DP:GQ:MIN_DP:PL 0/0:68:0:68:0,0,1167 +chrX 1660889 . T . . END=1660893 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,120,1800 +chrX 1660894 . T . . END=1660899 GT:DP:GQ:MIN_DP:PL 0/0:62:0:62:0,0,1120 +chrX 1660900 . T . . END=1660900 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1660901 . A . . END=1660904 GT:DP:GQ:MIN_DP:PL 0/0:59:0:59:0,0,1415 +chrX 1660905 . A . . END=1660906 GT:DP:GQ:MIN_DP:PL 0/0:56:78:56:0,78,1567 +chrX 1660907 . G . . END=1660907 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1297 +chrX 1660908 . T . . END=1660997 GT:DP:GQ:MIN_DP:PL 0/0:51:40:51:0,40,1329 +chrX 1660998 . T C, 1494.06 . AS_QUALapprox=|1508|0;AS_VarDP=0|47|0;DP=48;QUALapprox=1508;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1508,140,0,1508,140,1508:0,0,25,22 +chrX 1660999 . G . . END=1661149 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,109,1534 +chrX 1661150 . G A, 0.05 . AS_QUALapprox=|3|0;AS_VarDP=41|3|0;BaseQRankSum=-2.424;DP=48;MQRankSum=-2.957;QUALapprox=3;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165756,48;ReadPosRankSum=1.121;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:41,3,0:44:3:0|1:1661150_G_A:3,0,1571,126,1580,1706:1661150:19,22,2,1 +chrX 1661151 . C . . END=1661154 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,120,1800 +chrX 1661155 . G C, 0.05 . AS_QUALapprox=|3|0;AS_VarDP=41|3|0;BaseQRankSum=-1.061;DP=46;MQRankSum=-2.957;QUALapprox=3;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158556,46;ReadPosRankSum=0.882;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:41,3,0:44:3:0|1:1661150_G_A:3,0,1571,126,1580,1706:1661150:19,22,2,1 +chrX 1661156 . A T, 1481.06 . AS_QUALapprox=|1495|0;AS_VarDP=0|44|0;DP=46;QUALapprox=1495;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158556,46;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,44,0:44:99:0|1:1661150_G_A:1495,132,0,1495,132,1495:1661150:0,0,21,23 +chrX 1661157 . C . . END=1661567 GT:DP:GQ:MIN_DP:PL 0/0:46:39:46:0,39,1095 +chrX 1661568 . A . . END=1661604 GT:DP:GQ:MIN_DP:PL 0/0:61:0:61:0,0,429 +chrX 1661605 . C A, 955.04 . AS_QUALapprox=|965|0;AS_VarDP=5|36|0;BaseQRankSum=3.124;DP=61;MQRankSum=-0.418;QUALapprox=965;RAW_GT_COUNT=0,0,1;RAW_MQandDP=207111,61;ReadPosRankSum=-1.805;VarDP=41 GT:AD:DP:GQ:PL:SB 1/1:5,36,0:41:71:965,71,0,1069,126,1471:1,3,25,11 +chrX 1661606 . C . . END=1661638 GT:DP:GQ:MIN_DP:PL 0/0:58:0:58:0,0,464 +chrX 1661639 . T . . END=1661640 GT:DP:GQ:MIN_DP:PL 0/0:56:26:56:0,26,1472 +chrX 1661641 . A . . END=1661642 GT:DP:GQ:MIN_DP:PL 0/0:55:8:55:0,8,1429 +chrX 1661643 . G . . END=1662249 GT:DP:GQ:MIN_DP:PL 0/0:67:62:67:0,62,1230 +chrX 1662250 . C . . END=1662250 GT:DP:GQ:MIN_DP:PL 0/0:44:13:44:0,13,1161 +chrX 1662251 . G . . END=1662264 GT:DP:GQ:MIN_DP:PL 0/0:45:66:45:0,66,1270 +chrX 1662265 . C G, 1197.06 . AS_QUALapprox=|1211|0;AS_VarDP=0|38|0;DP=39;QUALapprox=1211;RAW_GT_COUNT=0,0,1;RAW_MQandDP=138452,39;VarDP=38 GT:AD:DP:GQ:PL:SB 1/1:0,38,0:38:99:1211,114,0,1211,114,1211:0,0,17,21 +chrX 1662266 . A . . END=1662272 GT:DP:GQ:MIN_DP:PL 0/0:43:96:43:0,96,1261 +chrX 1662273 . T . . END=1662273 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,996 +chrX 1662274 . G . . END=1662448 GT:DP:GQ:MIN_DP:PL 0/0:51:60:51:0,60,1066 +chrX 1662449 . T . . END=1662449 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,1211 +chrX 1662450 . A . . END=1662450 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,117,1755 +chrX 1662451 . T . . END=1662451 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,1097 +chrX 1662452 . T TAAAAA, 698.60 . AS_QUALapprox=|706|0;AS_VarDP=13|20|0;BaseQRankSum=-1.831;DP=49;MQRankSum=0.960;QUALapprox=706;RAW_GT_COUNT=0,1,0;RAW_MQandDP=173714,49;ReadPosRankSum=-0.947;VarDP=33 GT:AD:DP:GQ:PL:SB 0/1:13,20,0:33:99:706,0,476,746,536,1282:9,4,14,6 +chrX 1662453 . A . . END=1662478 GT:DP:GQ:MIN_DP:PL 0/0:43:82:43:0,82,1097 +chrX 1662479 . T C, 665.64 . AS_QUALapprox=|673|0;AS_VarDP=19|25|0;BaseQRankSum=-0.247;DP=46;MQRankSum=1.193;QUALapprox=673;RAW_GT_COUNT=0,1,0;RAW_MQandDP=164809,46;ReadPosRankSum=-0.901;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:19,25,0:44:99:673,0,469,729,544,1273:15,4,16,9 +chrX 1662480 . C . . END=1662581 GT:DP:GQ:MIN_DP:PL 0/0:72:83:72:0,83,1474 +chrX 1662582 . A G, 2385.06 . AS_QUALapprox=|2399|0;AS_VarDP=0|77|0;DP=81;QUALapprox=2399;RAW_GT_COUNT=0,0,1;RAW_MQandDP=291600,81;VarDP=77 GT:AD:DP:GQ:PL:SB 1/1:0,77,0:77:99:2399,230,0,2399,230,2399:0,0,36,41 +chrX 1662583 . A . . END=1662688 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 1662689 . A T, 1268.64 . AS_QUALapprox=|1276|0;AS_VarDP=19|36|0;BaseQRankSum=0.249;DP=56;MQRankSum=1.415;QUALapprox=1276;RAW_GT_COUNT=0,1,0;RAW_MQandDP=200809,56;ReadPosRankSum=0.460;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:19,36,0:55:99:0|1:1662689_A_T:1276,0,561,1333,669,2002:1662689:7,12,21,15 +chrX 1662690 . T . . END=1662721 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 1662722 . T G, 1241.64 . AS_QUALapprox=|1249|0;AS_VarDP=13|36|0;BaseQRankSum=-2.128;DP=51;MQRankSum=1.710;QUALapprox=1249;RAW_GT_COUNT=0,1,0;RAW_MQandDP=182809,51;ReadPosRankSum=-1.823;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:13,36,0:49:99:0|1:1662689_A_T:1249,0,388,1288,495,1783:1662689:5,8,20,16 +chrX 1662723 . C . . END=1662776 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 1662777 . A G, 1083.64 . AS_QUALapprox=|1091|0;AS_VarDP=12|41|0;BaseQRankSum=-1.615;DP=56;MQRankSum=1.894;QUALapprox=1091;RAW_GT_COUNT=0,1,0;RAW_MQandDP=200809,56;ReadPosRankSum=0.404;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:12,41,0:53:99:1091,0,249,1127,371,1499:6,6,19,22 +chrX 1662778 . G . . END=1662856 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,117,1373 +chrX 1662857 . G GTATATATATATATATA, 413.60 . AS_QUALapprox=|421|0;AS_VarDP=27|12|0;BaseQRankSum=-2.103;DP=51;MQRankSum=0.995;QUALapprox=421;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176916,51;ReadPosRankSum=-0.167;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:27,12,0:39:99:421,0,1099,504,1135,1639:11,16,6,6 +chrX 1662858 . T . . END=1662875 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,102,1425 +chrX 1662876 . TATA T, 1075.60 . AS_QUALapprox=|1083|0;AS_VarDP=16|29|0;BaseQRankSum=-0.944;DP=49;MQRankSum=-0.082;QUALapprox=1083;RAW_GT_COUNT=0,1,0;RAW_MQandDP=167716,49;ReadPosRankSum=0.138;VarDP=45 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:16,29,0:45:99:0|1:1662876_TATA_T:1083,0,571,1132,658,1790:1662876:8,8,11,18 +chrX 1662880 . T . . END=1662880 GT:DP:GQ:MIN_DP:PL 0/0:50:0:50:0,0,0 +chrX 1662881 . A *,T, 1132.04 . AS_QUALapprox=|0|1179|0;AS_VarDP=16|1|29|0;BaseQRankSum=-0.848;DP=47;MQRankSum=-0.054;QUALapprox=1179;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,47;ReadPosRankSum=-0.747;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|2:16,1,29,0:46:99:0|1:1662876_TATA_T:1179,1112,1766,0,638,579,1191,1781,671,1848:1662876:8,8,11,19 +chrX 1662882 . T . . END=1662882 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,99,1485 +chrX 1662883 . A *,T, 1132.04 . AS_QUALapprox=|0|1179|0;AS_VarDP=16|1|29|0;BaseQRankSum=0.404;DP=47;MQRankSum=-0.054;QUALapprox=1179;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,47;ReadPosRankSum=-0.391;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|2:16,1,29,0:46:99:0|1:1662876_TATA_T:1179,1112,1766,0,638,579,1191,1781,671,1848:1662876:8,8,11,19 +chrX 1662884 . T . . END=1662884 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,99,1485 +chrX 1662885 . A T, 1181.64 . AS_QUALapprox=|1189|0;AS_VarDP=16|30|0;BaseQRankSum=1.468;DP=47;MQRankSum=-0.054;QUALapprox=1189;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,47;ReadPosRankSum=-0.380;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:16,30,0:46:99:1189,0,581,1237,672,1909:8,8,10,20 +chrX 1662886 . T . . END=1662888 GT:DP:GQ:MIN_DP:PL 0/0:47:92:47:0,92,1425 +chrX 1662889 . T . . END=1662889 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,1147 +chrX 1662890 . T . . END=1662891 GT:DP:GQ:MIN_DP:PL 0/0:46:31:45:0,31,1276 +chrX 1662892 . A . . END=1662892 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,1086 +chrX 1662893 . G . . END=1663481 GT:DP:GQ:MIN_DP:PL 0/0:44:23:39:0,23,1016 +chrX 1663482 . T A, 719.64 . AS_QUALapprox=|727|0;AS_VarDP=27|27|0;BaseQRankSum=0.746;DP=56;MQRankSum=-1.401;QUALapprox=727;RAW_GT_COUNT=0,1,0;RAW_MQandDP=200018,56;ReadPosRankSum=-1.238;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:27,27,0:54:99:727,0,736,808,817,1624:14,13,14,13 +chrX 1663483 . T . . END=1664018 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,101,1462 +chrX 1664019 . C T, 2081.06 . AS_QUALapprox=|2095|0;AS_VarDP=0|62|0;DP=62;QUALapprox=2095;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:0,62,0:62:99:2095,186,0,2095,186,2095:0,0,29,33 +chrX 1664020 . C . . END=1664139 GT:DP:GQ:MIN_DP:PL 0/0:58:81:58:0,81,1323 +chrX 1664140 . T C, 537.64 . AS_QUALapprox=|545|0;AS_VarDP=21|21|0;BaseQRankSum=0.662;DP=44;MQRankSum=0.000;QUALapprox=545;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=-1.057;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:21,21,0:42:99:545,0,538,607,600,1207:7,14,11,10 +chrX 1664141 . T . . END=1664365 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,99,1400 +chrX 1664366 . A G, 1748.06 . AS_QUALapprox=|1762|0;AS_VarDP=0|53|0;DP=53;QUALapprox=1762;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1762,159,0,1762,159,1762:0,0,19,34 +chrX 1664367 . T . . END=1664487 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,107,1608 +chrX 1664488 . G A, 732.64 . AS_QUALapprox=|740|0;AS_VarDP=22|26|0;BaseQRankSum=2.735;DP=49;MQRankSum=0.000;QUALapprox=740;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=-0.611;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:22,26,0:48:99:740,0,515,806,594,1399:11,11,13,13 +chrX 1664489 . T . . END=1664618 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,119,1498 +chrX 1664619 . A T, 735.64 . AS_QUALapprox=|743|0;AS_VarDP=32|29|0;BaseQRankSum=-2.656;DP=61;MQRankSum=0.000;QUALapprox=743;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-0.780;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:32,29,0:61:99:743,0,919,839,1006,1846:21,11,11,18 +chrX 1664620 . T . . END=1664732 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1664733 . C CAA, 474.60 . AS_QUALapprox=|482|0;AS_VarDP=27|17|0;BaseQRankSum=-0.017;DP=52;MQRankSum=0.000;QUALapprox=482;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=0.675;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:27,17,0:44:99:482,0,822,563,873,1436:10,17,12,5 +chrX 1664734 . A . . END=1664845 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1664846 . A T, 947.64 . AS_QUALapprox=|955|0;AS_VarDP=28|34|0;BaseQRankSum=-1.155;DP=65;MQRankSum=0.000;QUALapprox=955;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=-0.693;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:28,34,0:62:99:955,0,777,1039,879,1918:11,17,22,12 +chrX 1664847 . G . . END=1665108 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,119,1687 +chrX 1665109 . G A, 2091.06 . AS_QUALapprox=|2105|0;AS_VarDP=0|57|0;DP=58;QUALapprox=2105;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208116,58;VarDP=57 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,57,0:57:99:0|1:1665109_G_A:2105,171,0,2105,171,2105:1665109:0,0,29,28 +chrX 1665110 . G . . END=1665124 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1665125 . G A, 599.64 . AS_QUALapprox=|607|0;AS_VarDP=31|23|0;BaseQRankSum=0.897;DP=55;MQRankSum=-1.124;QUALapprox=607;RAW_GT_COUNT=0,1,0;RAW_MQandDP=197316,55;ReadPosRankSum=-1.304;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:31,23,0:54:99:0|1:1665109_G_A:607,0,845,700,914,1614:1665109:16,15,11,12 +chrX 1665126 . G . . END=1665534 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,101,1443 +chrX 1665535 . C G, 790.64 . AS_QUALapprox=|798|0;AS_VarDP=23|29|0;BaseQRankSum=1.768;DP=53;MQRankSum=0.000;QUALapprox=798;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=1.696;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:23,29,0:52:99:798,0,534,866,621,1487:11,12,16,13 +chrX 1665536 . T . . END=1665864 GT:DP:GQ:MIN_DP:PL 0/0:51:23:46:0,23,1485 +chrX 1665865 . C CT, 662.03 . AS_QUALapprox=|676|0;AS_VarDP=0|32|0;DP=47;QUALapprox=676;RAW_GT_COUNT=0,0,1;RAW_MQandDP=160705,47;VarDP=32 GT:AD:DP:GQ:PL:SB 1/1:0,32,0:32:94:676,94,0,676,94,676:0,0,20,12 +chrX 1665866 . T . . END=1666380 GT:DP:GQ:MIN_DP:PL 0/0:42:46:37:0,46,843 +chrX 1666381 . C T, 644.64 . AS_QUALapprox=|652|0;AS_VarDP=34|25|0;BaseQRankSum=1.235;DP=59;MQRankSum=0.892;QUALapprox=652;RAW_GT_COUNT=0,1,0;RAW_MQandDP=211936,59;ReadPosRankSum=-0.353;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:34,25,0:59:99:652,0,890,754,965,1719:15,19,15,10 +chrX 1666382 . G . . END=1667533 GT:DP:GQ:MIN_DP:PL 0/0:63:42:63:0,42,1290 +chrX 1667534 . G T, 1957.06 . AS_QUALapprox=|1971|0;AS_VarDP=0|60|0;DP=65;QUALapprox=1971;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:1971,180,0,2098,189,2392:0,0,22,38 +chrX 1667535 . T . . END=1667849 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 1667850 . C T, 1781.06 . AS_QUALapprox=|1795|0;AS_VarDP=0|54|0;DP=56;QUALapprox=1795;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:1795,162,0,1795,162,1795:0,0,30,24 +chrX 1667851 . G . . END=1668508 GT:DP:GQ:MIN_DP:PL 0/0:59:82:59:0,82,1216 +chrX 1668509 . A AAATAAT, 420.60 . AS_QUALapprox=|428|0;AS_VarDP=11|11|0;BaseQRankSum=1.453;DP=42;MQRankSum=-0.909;QUALapprox=428;RAW_GT_COUNT=0,1,0;RAW_MQandDP=148041,42;ReadPosRankSum=0.099;VarDP=22 GT:AD:DP:GQ:PL:SB 0/1:11,11,0:22:99:428,0,416,462,449,911:6,5,5,6 +chrX 1668510 . A . . END=1668552 GT:DP:GQ:MIN_DP:PL 0/0:39:63:39:0,63,945 +chrX 1668553 . G . . END=1668553 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,1047 +chrX 1668554 . T . . END=1668687 GT:DP:GQ:MIN_DP:PL 0/0:49:56:49:0,56,945 +chrX 1668688 . G . . END=1668688 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,798 +chrX 1668689 . A . . END=1668896 GT:DP:GQ:MIN_DP:PL 0/0:35:31:33:0,31,720 +chrX 1668897 . C . . END=1668897 GT:DP:GQ:MIN_DP:PL 0/0:18:0:18:0,0,0 +chrX 1668898 . C . . END=1668930 GT:DP:GQ:MIN_DP:PL 0/0:14:21:12:0,21,315 +chrX 1668931 . C . . END=1669121 GT:DP:GQ:MIN_DP:PL 0/0:0:0:0:0,0,0 +chrX 1669122 . C . . END=1669142 GT:DP:GQ:MIN_DP:PL 0/0:15:21:7:0,21,243 +chrX 1669143 . C T, 698.06 . AS_QUALapprox=|712|0;AS_VarDP=0|21|0;DP=21;QUALapprox=712;RAW_GT_COUNT=0,0,1;RAW_MQandDP=69163,21;VarDP=21 GT:AD:DP:GQ:PL:SB 1/1:0,21,0:21:63:712,63,0,712,63,712:0,0,8,13 +chrX 1669144 . T . . END=1669192 GT:DP:GQ:MIN_DP:PL 0/0:38:60:38:0,60,680 +chrX 1669193 . C T, 1524.06 . AS_QUALapprox=|1538|0;AS_VarDP=0|47|0;DP=47;QUALapprox=1538;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162763,47;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1538,140,0,1538,140,1538:0,0,21,26 +chrX 1669194 . C . . END=1669244 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 1669245 . C A, 1999.06 . AS_QUALapprox=|2013|0;AS_VarDP=0|60|0;DP=60;QUALapprox=2013;RAW_GT_COUNT=0,0,1;RAW_MQandDP=209682,60;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:2013,180,0,2013,180,2013:0,0,26,34 +chrX 1669246 . G . . END=1669723 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,116,1683 +chrX 1669724 . T G, 2136.06 . AS_QUALapprox=|2150|0;AS_VarDP=0|68|0;DP=70;QUALapprox=2150;RAW_GT_COUNT=0,0,1;RAW_MQandDP=247209,70;VarDP=68 GT:AD:DP:GQ:PL:SB 1/1:0,68,0:68:99:2150,203,0,2150,203,2150:0,0,36,32 +chrX 1669725 . T . . END=1669841 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,102,1747 +chrX 1669842 . G A, 2386.06 . AS_QUALapprox=|2400|0;AS_VarDP=2|55|0;BaseQRankSum=1.075;DP=59;MQRankSum=-0.204;QUALapprox=2400;RAW_GT_COUNT=0,0,1;RAW_MQandDP=209504,59;ReadPosRankSum=2.387;VarDP=57 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:2,55,0:57:99:0|1:1669842_G_A:2400,127,0,2406,166,2444:1669842:2,0,26,29 +chrX 1669843 . A . . END=1669848 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 1669849 . T C, 2576.06 . AS_QUALapprox=|2590|0;AS_VarDP=0|58|0;DP=58;QUALapprox=2590;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205904,58;VarDP=58 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,58,0:58:99:0|1:1669842_G_A:2590,175,0,2590,175,2590:1669842:0,0,27,31 +chrX 1669850 . G A, 2621.06 . AS_QUALapprox=|2635|0;AS_VarDP=0|59|0;DP=59;QUALapprox=2635;RAW_GT_COUNT=0,0,1;RAW_MQandDP=209504,59;VarDP=59 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,59,0:59:99:0|1:1669842_G_A:2635,178,0,2635,178,2635:1669842:0,0,28,31 +chrX 1669851 . A . . END=1669857 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 1669858 . G A, 2630.06 . AS_QUALapprox=|2644|0;AS_VarDP=0|59|0;DP=59;QUALapprox=2644;RAW_GT_COUNT=0,0,1;RAW_MQandDP=211504,59;VarDP=59 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,59,0:59:99:0|1:1669842_G_A:2644,178,0,2644,178,2644:1669842:0,0,29,30 +chrX 1669859 . T . . END=1669874 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 1669875 . G C, 2627.06 . AS_QUALapprox=|2641|0;AS_VarDP=0|61|0;DP=64;QUALapprox=2641;RAW_GT_COUNT=0,0,1;RAW_MQandDP=229504,64;VarDP=61 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,61,0:61:99:0|1:1669842_G_A:2641,184,0,2641,184,2641:1669842:0,0,32,29 +chrX 1669876 . C . . END=1669934 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1669935 . G A, 2069.06 . AS_QUALapprox=|2083|0;AS_VarDP=0|65|0;DP=69;QUALapprox=2083;RAW_GT_COUNT=0,0,1;RAW_MQandDP=243268,69;VarDP=65 GT:AD:DP:GQ:PL:SB 1/1:0,65,0:65:99:2083,195,0,2083,195,2083:0,0,37,28 +chrX 1669936 . C . . END=1670070 GT:DP:GQ:MIN_DP:PL 0/0:64:72:64:0,72,1583 +chrX 1670071 . A G, 1682.06 . AS_QUALapprox=|1696|0;AS_VarDP=0|54|0;DP=57;QUALapprox=1696;RAW_GT_COUNT=0,0,1;RAW_MQandDP=200089,57;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:1696,161,0,1696,161,1696:0,0,24,30 +chrX 1670072 . T . . END=1670305 GT:DP:GQ:MIN_DP:PL 0/0:71:67:71:0,67,1574 +chrX 1670306 . A G, 2045.06 . AS_QUALapprox=|2059|0;AS_VarDP=0|64|0;DP=67;QUALapprox=2059;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=64 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:2059,191,0,2059,191,2059:0,0,38,26 +chrX 1670307 . T . . END=1670480 GT:DP:GQ:MIN_DP:PL 0/0:51:76:51:0,76,1245 +chrX 1670481 . T A, 1786.06 . AS_QUALapprox=|1800|0;AS_VarDP=0|58|0;DP=62;QUALapprox=1800;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=58 GT:AD:DP:GQ:PL:SB 1/1:0,58,0:58:99:1800,174,0,1800,174,1800:0,0,33,25 +chrX 1670482 . G . . END=1670616 GT:DP:GQ:MIN_DP:PL 0/0:62:45:62:0,45,1620 +chrX 1670617 . G . . END=1670618 GT:DP:GQ:MIN_DP:PL 0/0:58:0:58:0,0,1384 +chrX 1670619 . T . . END=1670619 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,102,1530 +chrX 1670620 . A ATTT, 628.60 . AS_QUALapprox=|636|0;AS_VarDP=12|23|0;BaseQRankSum=-1.687;DP=63;MQRankSum=0.302;QUALapprox=636;RAW_GT_COUNT=0,1,0;RAW_MQandDP=197407,63;ReadPosRankSum=-2.578;VarDP=35 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:12,23,0:35:99:0|1:1670620_A_ATTT:636,0,362,673,430,1103:1670620:12,0,0,23 +chrX 1670621 . T . . END=1670645 GT:DP:GQ:MIN_DP:PL 0/0:50:75:50:0,75,1125 +chrX 1670646 . G T, 361.64 . AS_QUALapprox=|369|0;AS_VarDP=34|13|0;BaseQRankSum=-0.323;DP=53;MQRankSum=-1.254;QUALapprox=369;RAW_GT_COUNT=0,1,0;RAW_MQandDP=159407,53;ReadPosRankSum=1.403;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:34,13,0:47:99:1|0:1670620_A_ATTT:369,0,1329,472,1368,1840:1670620:5,29,13,0 +chrX 1670647 . T . . END=1670647 GT:DP:GQ:MIN_DP:PL 0/0:46:93:46:0,93,1395 +chrX 1670648 . A T, 355.64 . AS_QUALapprox=|363|0;AS_VarDP=36|13|0;BaseQRankSum=-0.138;DP=50;MQRankSum=-1.354;QUALapprox=363;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151307,50;ReadPosRankSum=1.203;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:36,13,0:49:99:1|0:1670620_A_ATTT:363,0,1413,472,1452,1924:1670620:7,29,13,0 +chrX 1670649 . T . . END=1670652 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,99,1485 +chrX 1670653 . TAG T, 364.60 . AS_QUALapprox=|372|0;AS_VarDP=33|13|0;BaseQRankSum=-1.393;DP=48;MQRankSum=-1.552;QUALapprox=372;RAW_GT_COUNT=0,1,0;RAW_MQandDP=146458,48;ReadPosRankSum=0.781;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:33,13,0:46:99:1|0:1670620_A_ATTT:372,0,1333,472,1372,1844:1670620:7,26,13,0 +chrX 1670655 . G GTTTTT, 364.60 . AS_QUALapprox=|372|0;AS_VarDP=33|13|0;DP=48;MQRankSum=-1.552;QUALapprox=372;RAW_GT_COUNT=0,1,0;RAW_MQandDP=146458,48;ReadPosRankSum=1.103;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:33,13,0:46:99:1|0:1670620_A_ATTT:372,0,1333,472,1372,1844:1670620:7,26,13,0 +chrX 1670656 . T . . END=1670656 GT:DP:GQ:MIN_DP:PL 0/0:50:96:50:0,96,1440 +chrX 1670657 . A . . END=1670658 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,992 +chrX 1670659 . A . . END=1670914 GT:DP:GQ:MIN_DP:PL 0/0:49:46:49:0,46,1162 +chrX 1670915 . G C, 2103.06 . AS_QUALapprox=|2117|0;AS_VarDP=0|65|0;DP=67;QUALapprox=2117;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=65 GT:AD:DP:GQ:PL:SB 1/1:0,65,0:65:99:2117,195,0,2117,195,2117:0,0,42,23 +chrX 1670916 . C . . END=1670933 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 1670934 . A G, 1944.06 . AS_QUALapprox=|1958|0;AS_VarDP=0|63|0;DP=65;QUALapprox=1958;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=63 GT:AD:DP:GQ:PL:SB 1/1:0,63,0:63:99:1958,188,0,1958,188,1958:0,0,39,24 +chrX 1670935 . A . . END=1676662 GT:DP:GQ:MIN_DP:PL 0/0:59:25:53:0,25,978 +chrX 1676663 . T G, 568.64 . AS_QUALapprox=|576|0;AS_VarDP=28|22|0;BaseQRankSum=0.150;DP=53;MQRankSum=0.927;QUALapprox=576;RAW_GT_COUNT=0,1,0;RAW_MQandDP=189801,53;ReadPosRankSum=-0.606;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:28,22,0:50:99:576,0,792,660,858,1517:18,10,10,12 +chrX 1676664 . G . . END=1676725 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,102,1391 +chrX 1676726 . G A, 773.64 . AS_QUALapprox=|781|0;AS_VarDP=19|27|0;BaseQRankSum=1.394;DP=46;MQRankSum=-0.795;QUALapprox=781;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165249,46;ReadPosRankSum=0.647;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:19,27,0:46:99:781,0,465,837,547,1384:12,7,18,9 +chrX 1676727 . G . . END=1676996 GT:DP:GQ:MIN_DP:PL 0/0:51:96:51:0,96,1185 +chrX 1676997 . G A, 941.64 . AS_QUALapprox=|949|0;AS_VarDP=19|33|0;BaseQRankSum=1.816;DP=57;MQRankSum=0.000;QUALapprox=949;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=0.875;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:19,33,0:52:99:949,0,414,1006,514,1519:7,12,17,16 +chrX 1676998 . A . . END=1677028 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 1677029 . A G, 853.64 . AS_QUALapprox=|861|0;AS_VarDP=26|34|0;BaseQRankSum=-2.872;DP=62;MQRankSum=0.000;QUALapprox=861;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=0.261;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:26,34,0:60:99:861,0,704,939,806,1745:13,13,17,17 +chrX 1677030 . G . . END=1677445 GT:DP:GQ:MIN_DP:PL 0/0:61:81:61:0,81,1333 +chrX 1677446 . C T,CT, 329.03 . AS_QUALapprox=|0|343|0;AS_VarDP=0|0|17|0;DP=36;QUALapprox=343;RAW_GT_COUNT=0,0,1;RAW_MQandDP=125249,36;VarDP=17 GT:AD:DP:GQ:PL:SB 2/2:0,0,17,0:17:52:343,424,1096,52,102,0,421,798,103,720:0,0,8,9 +chrX 1677447 . T . . END=1677466 GT:DP:GQ:MIN_DP:PL 0/0:47:66:47:0,66,990 +chrX 1677467 . G . . END=1677468 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,559 +chrX 1677469 . G . . END=1677469 GT:DP:GQ:MIN_DP:PL 0/0:34:42:34:0,42,952 +chrX 1677470 . A . . END=1677470 GT:DP:GQ:MIN_DP:PL 0/0:34:3:34:0,3,883 +chrX 1677471 . T . . END=1677471 GT:DP:GQ:MIN_DP:PL 0/0:33:74:33:0,74,1017 +chrX 1677472 . G . . END=1677472 GT:DP:GQ:MIN_DP:PL 0/0:34:14:34:0,14,935 +chrX 1677473 . G . . END=1677615 GT:DP:GQ:MIN_DP:PL 0/0:34:29:33:0,29,888 +chrX 1677616 . C T, 1632.06 . AS_QUALapprox=|1646|0;AS_VarDP=0|50|0;DP=51;QUALapprox=1646;RAW_GT_COUNT=0,0,1;RAW_MQandDP=182916,51;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1646,150,0,1646,150,1646:0,0,23,27 +chrX 1677617 . T . . END=1677716 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,112,1376 +chrX 1677717 . G A, 1514.06 . AS_QUALapprox=|1528|0;AS_VarDP=0|47|0;DP=51;QUALapprox=1528;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1528,141,0,1528,141,1528:0,0,23,24 +chrX 1677718 . G . . END=1678025 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 1678026 . T C, 2563.06 . AS_QUALapprox=|2577|0;AS_VarDP=0|59|0;DP=62;QUALapprox=2577;RAW_GT_COUNT=0,0,1;RAW_MQandDP=222736,62;VarDP=59 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,59,0:59:99:0|1:1678026_T_C:2577,177,0,2577,177,2577:1678026:0,0,32,27 +chrX 1678027 . G . . END=1678034 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1678035 . T C, 2577.06 . AS_QUALapprox=|2591|0;AS_VarDP=0|59|0;DP=61;QUALapprox=2591;RAW_GT_COUNT=0,0,1;RAW_MQandDP=217472,61;VarDP=59 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,59,0:59:99:0|1:1678026_T_C:2591,178,0,2591,178,2591:1678026:0,0,30,29 +chrX 1678036 . G . . END=1678060 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1678061 . T A, 2028.06 . AS_QUALapprox=|2042|0;AS_VarDP=0|65|0;DP=70;QUALapprox=2042;RAW_GT_COUNT=0,0,1;RAW_MQandDP=250336,70;VarDP=65 GT:AD:DP:GQ:PL:SB 1/1:0,65,0:65:99:2042,194,0,2042,194,2042:0,0,33,32 +chrX 1678062 . G . . END=1678251 GT:DP:GQ:MIN_DP:PL 0/0:54:22:47:0,22,1130 +chrX 1678252 . G A, 1573.06 . AS_QUALapprox=|1587|0;AS_VarDP=0|54|0;DP=57;QUALapprox=1587;RAW_GT_COUNT=0,0,1;RAW_MQandDP=202736,57;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:1587,162,0,1587,162,1587:0,0,17,37 +chrX 1678253 . A . . END=1678320 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1678321 . T C, 1482.06 . AS_QUALapprox=|1496|0;AS_VarDP=0|51|0;DP=53;QUALapprox=1496;RAW_GT_COUNT=0,0,1;RAW_MQandDP=184561,53;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1496,150,0,1496,150,1496:0,0,20,31 +chrX 1678322 . G . . END=1679065 GT:DP:GQ:MIN_DP:PL 0/0:61:52:61:0,52,1395 +chrX 1679066 . C CGG, 2621.03 . AS_QUALapprox=|2635|0;AS_VarDP=0|60|0;DP=61;QUALapprox=2635;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,60,0:60:99:0|1:1679066_C_CGG:2635,181,0,2635,181,2636:1679066:0,0,32,28 +chrX 1679067 . A AG, 2621.03 . AS_QUALapprox=|2635|0;AS_VarDP=0|60|0;DP=61;QUALapprox=2635;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,60,0:60:99:0|1:1679066_C_CGG:2635,181,0,2635,181,2636:1679066:0,0,32,28 +chrX 1679068 . G . . END=1679392 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,102,1681 +chrX 1679393 . A G, 1989.06 . AS_QUALapprox=|2003|0;AS_VarDP=0|63|0;DP=66;QUALapprox=2003;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=63 GT:AD:DP:GQ:PL:SB 1/1:0,63,0:63:99:2003,188,0,2003,188,2003:0,0,29,34 +chrX 1679394 . T . . END=1680502 GT:DP:GQ:MIN_DP:PL 0/0:64:76:64:0,76,1397 +chrX 1680503 . C T, 1908.06 . AS_QUALapprox=|1922|0;AS_VarDP=0|57|0;DP=61;QUALapprox=1922;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1922,171,0,1922,171,1922:0,0,29,28 +chrX 1680504 . G . . END=1680629 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 1680630 . G C, 1759.06 . AS_QUALapprox=|1773|0;AS_VarDP=0|56|0;DP=57;QUALapprox=1773;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1773,167,0,1773,167,1773:0,0,24,32 +chrX 1680631 . G . . END=1681021 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 1681022 . A G, 630.64 . AS_QUALapprox=|638|0;AS_VarDP=41|26|0;BaseQRankSum=-0.038;DP=72;MQRankSum=0.000;QUALapprox=638;RAW_GT_COUNT=0,1,0;RAW_MQandDP=256896,72;ReadPosRankSum=1.120;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:41,26,0:67:99:638,0,1142,761,1219,1980:18,23,14,12 +chrX 1681023 . G . . END=1681123 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1681124 . C CA, 2731.03 . AS_QUALapprox=|2745|0;AS_VarDP=0|61|0;DP=61;QUALapprox=2745;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=61 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,61,0:61:99:0|1:1681124_C_CA:2745,184,0,2745,184,2745:1681124:0,0,24,37 +chrX 1681125 . C . . END=1681126 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1681127 . G A, 2766.06 . AS_QUALapprox=|2780|0;AS_VarDP=0|62|0;DP=62;QUALapprox=2780;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=62 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,62,0:62:99:0|1:1681124_C_CA:2780,187,0,2780,187,2780:1681124:0,0,25,37 +chrX 1681128 . C . . END=1681128 GT:DP:GQ:MIN_DP:PL 0/0:72:0:72:0,0,1966 +chrX 1681129 . A . . END=1681451 GT:DP:GQ:MIN_DP:PL 0/0:70:28:67:0,28,1800 +chrX 1681452 . C CT, 504.60 . AS_QUALapprox=|512|0;AS_VarDP=30|24|0;BaseQRankSum=0.284;DP=64;MQRankSum=0.000;QUALapprox=512;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=1.524;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:30,24,0:54:99:512,0,682,602,754,1357:11,19,9,15 +chrX 1681453 . T . . END=1681597 GT:DP:GQ:MIN_DP:PL 0/0:55:41:55:0,41,1210 +chrX 1681598 . TTGTCTCTCTGTCTCTC T,TTGTCTCTC, 563.60 . AS_QUALapprox=|262|571|0;AS_VarDP=18|8|15|0;BaseQRankSum=-0.090;DP=63;MQRankSum=-0.836;QUALapprox=571;RAW_GT_COUNT=0,1,0;RAW_MQandDP=225049,63;ReadPosRankSum=-0.849;VarDP=41 GT:AD:DP:GQ:PL:SB 0/2:18,8,15,0:41:99:571,309,1188,0,426,702,639,1140,759,1459:9,9,12,11 +chrX 1681615 . T . . END=1681623 GT:DP:GQ:MIN_DP:PL 0/0:51:98:51:0,98,1255 +chrX 1681624 . G . . END=1681624 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,975 +chrX 1681625 . T . . END=1681635 GT:DP:GQ:MIN_DP:PL 0/0:59:77:59:0,77,1468 +chrX 1681636 . GTCTC G, 697.60 . AS_QUALapprox=|705|0;AS_VarDP=17|18|0;BaseQRankSum=1.345;DP=45;MQRankSum=0.000;QUALapprox=705;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=0.127;VarDP=35 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:17,18,0:35:99:0|1:1681636_GTCTC_G:705,0,656,756,710,1467:1681636:8,9,7,11 +chrX 1681641 . T . . END=1681675 GT:DP:GQ:MIN_DP:PL 0/0:30:57:30:0,57,823 +chrX 1681676 . CCT C, 533.60 . AS_QUALapprox=|541|0;AS_VarDP=14|14|0;BaseQRankSum=-0.229;DP=36;MQRankSum=-0.038;QUALapprox=541;RAW_GT_COUNT=0,1,0;RAW_MQandDP=113377,36;ReadPosRankSum=-0.054;VarDP=28 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:14,14,0:28:99:0|1:1681636_GTCTC_G:541,0,530,583,572,1155:1681636:7,7,6,8 +chrX 1681679 . C . . END=1681690 GT:DP:GQ:MIN_DP:PL 0/0:53:0:53:0,0,287 +chrX 1681691 . T . . END=1681697 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,117,1286 +chrX 1681698 . C . . END=1681698 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,1063 +chrX 1681699 . C . . END=1681711 GT:DP:GQ:MIN_DP:PL 0/0:46:66:46:0,66,1264 +chrX 1681712 . C . . END=1681715 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,992 +chrX 1681716 . T . . END=1681730 GT:DP:GQ:MIN_DP:PL 0/0:47:22:46:0,22,1260 +chrX 1681731 . T . . END=1681731 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,918 +chrX 1681732 . T . . END=1681738 GT:DP:GQ:MIN_DP:PL 0/0:42:47:42:0,47,1066 +chrX 1681739 . C . . END=1681739 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,843 +chrX 1681740 . T . . END=1681740 GT:DP:GQ:MIN_DP:PL 0/0:40:85:40:0,85,1221 +chrX 1681741 . T . . END=1681741 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,460 +chrX 1681742 . T . . END=1681746 GT:DP:GQ:MIN_DP:PL 0/0:41:82:41:0,82,1156 +chrX 1681747 . T . . END=1681753 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,595 +chrX 1681754 . T . . END=1681758 GT:DP:GQ:MIN_DP:PL 0/0:44:28:43:0,28,1120 +chrX 1681759 . T . . END=1681759 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,791 +chrX 1681760 . T . . END=1681770 GT:DP:GQ:MIN_DP:PL 0/0:42:42:42:0,42,855 +chrX 1681771 . T TTCTCTCTCTCTTTC, 359.60 . AS_QUALapprox=|367|0;AS_VarDP=3|10|0;BaseQRankSum=-0.292;DP=21;MQRankSum=-0.914;QUALapprox=367;RAW_GT_COUNT=0,1,0;RAW_MQandDP=52724,21;ReadPosRankSum=1.030;VarDP=13 GT:AD:DP:GQ:PL:SB 0/1:3,10,0:13:80:367,0,80,376,110,486:1,2,3,7 +chrX 1681772 . T . . END=1681826 GT:DP:GQ:MIN_DP:PL 0/0:7:9:7:0,9,129 +chrX 1681827 . C . . END=1681862 GT:DP:GQ:MIN_DP:PL 0/0:10:21:10:0,21,238 +chrX 1681863 . T . . END=1681870 GT:DP:GQ:MIN_DP:PL 0/0:8:15:8:0,15,225 +chrX 1681871 . T TC, 230.60 . AS_QUALapprox=|238|0;AS_VarDP=2|6|0;BaseQRankSum=0.000;DP=14;MQRankSum=0.180;QUALapprox=238;RAW_GT_COUNT=0,1,0;RAW_MQandDP=25566,14;ReadPosRankSum=0.319;VarDP=8 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:2,6,0:8:51:0|1:1681871_T_TC:238,0,51,244,69,314:1681871:1,1,0,6 +chrX 1681872 . T TTTCTC, 230.60 . AS_QUALapprox=|238|0;AS_VarDP=2|6|0;BaseQRankSum=-0.619;DP=14;MQRankSum=0.180;QUALapprox=238;RAW_GT_COUNT=0,1,0;RAW_MQandDP=25566,14;ReadPosRankSum=0.000;VarDP=8 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:2,6,0:8:51:0|1:1681871_T_TC:238,0,51,244,69,314:1681871:1,1,0,6 +chrX 1681873 . T . . END=1681879 GT:DP:GQ:MIN_DP:PL 0/0:7:15:7:0,15,225 +chrX 1681880 . T C, 28.64 . AS_QUALapprox=|36|0;AS_VarDP=5|2|0;BaseQRankSum=-0.967;DP=14;MQRankSum=0.000;QUALapprox=36;RAW_GT_COUNT=0,1,0;RAW_MQandDP=23122,14;ReadPosRankSum=-0.366;VarDP=7 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:5,2,0:7:36:0|1:1681880_T_C:36,0,204,51,210,261:1681880:0,5,1,1 +chrX 1681881 . T . . END=1681883 GT:DP:GQ:MIN_DP:PL 0/0:7:12:7:0,12,180 +chrX 1681884 . C T, 28.64 . AS_QUALapprox=|36|0;AS_VarDP=5|2|0;BaseQRankSum=-0.967;DP=14;MQRankSum=0.000;QUALapprox=36;RAW_GT_COUNT=0,1,0;RAW_MQandDP=23122,14;ReadPosRankSum=-0.366;VarDP=7 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:5,2,0:7:36:0|1:1681880_T_C:36,0,204,51,210,261:1681880:0,5,1,1 +chrX 1681885 . T . . END=1681891 GT:DP:GQ:MIN_DP:PL 0/0:25:40:25:0,40,630 +chrX 1681892 . T . . END=1681894 GT:DP:GQ:MIN_DP:PL 0/0:22:0:22:0,0,227 +chrX 1681895 . T . . END=1681898 GT:DP:GQ:MIN_DP:PL 0/0:22:24:22:0,24,360 +chrX 1681899 . T . . END=1681900 GT:DP:GQ:MIN_DP:PL 0/0:22:0:22:0,0,367 +chrX 1681901 . T . . END=1681903 GT:DP:GQ:MIN_DP:PL 0/0:21:21:21:0,21,315 +chrX 1681904 . C . . END=1681906 GT:DP:GQ:MIN_DP:PL 0/0:20:0:20:0,0,397 +chrX 1681907 . T . . END=1681908 GT:DP:GQ:MIN_DP:PL 0/0:19:21:19:0,21,315 +chrX 1681909 . T . . END=1681929 GT:DP:GQ:MIN_DP:PL 0/0:12:0:12:0,0,0 +chrX 1681930 . T . . END=1681930 GT:DP:GQ:MIN_DP:PL 0/0:13:21:13:0,21,315 +chrX 1681931 . T . . END=1681936 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,80 +chrX 1681937 . C . . END=1681938 GT:DP:GQ:MIN_DP:PL 0/0:12:21:12:0,21,315 +chrX 1681939 . C . . END=1681940 GT:DP:GQ:MIN_DP:PL 0/0:12:0:12:0,0,80 +chrX 1681941 . C . . END=1681943 GT:DP:GQ:MIN_DP:PL 0/0:12:21:12:0,21,315 +chrX 1681944 . T . . END=1681945 GT:DP:GQ:MIN_DP:PL 0/0:13:0:13:0,0,10 +chrX 1681946 . T . . END=1681946 GT:DP:GQ:MIN_DP:PL 0/0:12:22:12:0,22,368 +chrX 1681947 . C . . END=1681948 GT:DP:GQ:MIN_DP:PL 0/0:12:0:12:0,0,178 +chrX 1681949 . C . . END=1681950 GT:DP:GQ:MIN_DP:PL 0/0:12:24:12:0,24,360 +chrX 1681951 . C . . END=1681967 GT:DP:GQ:MIN_DP:PL 0/0:10:0:10:0,0,0 +chrX 1681968 . T . . END=1681968 GT:DP:GQ:MIN_DP:PL 0/0:11:21:11:0,21,315 +chrX 1681969 . C . . END=1681970 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,154 +chrX 1681971 . C . . END=1681973 GT:DP:GQ:MIN_DP:PL 0/0:10:21:10:0,21,315 +chrX 1681974 . T . . END=1681976 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,238 +chrX 1681977 . C . . END=1681977 GT:DP:GQ:MIN_DP:PL 0/0:11:24:11:0,24,360 +chrX 1681978 . T . . END=1681978 GT:DP:GQ:MIN_DP:PL 0/0:12:11:12:0,11,338 +chrX 1681979 . C . . END=1681979 GT:DP:GQ:MIN_DP:PL 0/0:11:24:11:0,24,360 +chrX 1681980 . C . . END=1681981 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,74 +chrX 1681982 . T . . END=1681982 GT:DP:GQ:MIN_DP:PL 0/0:10:27:10:0,27,405 +chrX 1681983 . C . . END=1681983 GT:DP:GQ:MIN_DP:PL 0/0:12:1:12:0,1,318 +chrX 1681984 . T . . END=1681984 GT:DP:GQ:MIN_DP:PL 0/0:12:27:12:0,27,405 +chrX 1681985 . C . . END=1681986 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,213 +chrX 1681987 . C . . END=1681988 GT:DP:GQ:MIN_DP:PL 0/0:11:30:11:0,30,318 +chrX 1681989 . C . . END=1681990 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,238 +chrX 1681991 . C . . END=1681992 GT:DP:GQ:MIN_DP:PL 0/0:12:33:12:0,33,342 +chrX 1681993 . C . . END=1681993 GT:DP:GQ:MIN_DP:PL 0/0:12:1:12:0,1,318 +chrX 1681994 . T . . END=1681994 GT:DP:GQ:MIN_DP:PL 0/0:12:33:12:0,33,495 +chrX 1681995 . C . . END=1681996 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,238 +chrX 1681997 . C . . END=1681997 GT:DP:GQ:MIN_DP:PL 0/0:11:33:11:0,33,342 +chrX 1681998 . C . . END=1681998 GT:DP:GQ:MIN_DP:PL 0/0:12:0:12:0,0,258 +chrX 1681999 . C . . END=1682000 GT:DP:GQ:MIN_DP:PL 0/0:12:33:12:0,33,495 +chrX 1682001 . C . . END=1682002 GT:DP:GQ:MIN_DP:PL 0/0:12:0:12:0,0,252 +chrX 1682003 . C . . END=1682003 GT:DP:GQ:MIN_DP:PL 0/0:12:33:12:0,33,495 +chrX 1682004 . C . . END=1682004 GT:DP:GQ:MIN_DP:PL 0/0:12:1:12:0,1,318 +chrX 1682005 . C . . END=1682012 GT:DP:GQ:MIN_DP:PL 0/0:12:30:12:0,30,308 +chrX 1682013 . C . . END=1682013 GT:DP:GQ:MIN_DP:PL 0/0:13:4:13:0,4,362 +chrX 1682014 . T . . END=1682014 GT:DP:GQ:MIN_DP:PL 0/0:16:48:16:0,48,526 +chrX 1682015 . G . . END=1682015 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,327 +chrX 1682016 . T . . END=1682016 GT:DP:GQ:MIN_DP:PL 0/0:17:48:17:0,48,720 +chrX 1682017 . T . . END=1682017 GT:DP:GQ:MIN_DP:PL 0/0:17:2:17:0,2,432 +chrX 1682018 . T . . END=1682036 GT:DP:GQ:MIN_DP:PL 0/0:25:25:18:0,25,575 +chrX 1682037 . G . . END=1682043 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,194 +chrX 1682044 . T . . END=1682074 GT:DP:GQ:MIN_DP:PL 0/0:35:50:35:0,50,913 +chrX 1682075 . GTTTCTC G, 394.60 . AS_QUALapprox=|402|0;AS_VarDP=6|10|0;BaseQRankSum=2.482;DP=28;MQRankSum=-1.639;QUALapprox=402;RAW_GT_COUNT=0,1,0;RAW_MQandDP=77581,28;ReadPosRankSum=1.522;VarDP=16 GT:AD:DP:GQ:PL:SB 0/1:6,10,0:16:99:402,0,222,420,252,672:4,2,6,4 +chrX 1682082 . T . . END=1682109 GT:DP:GQ:MIN_DP:PL 0/0:29:28:17:0,28,406 +chrX 1682110 . T . . END=1682112 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,109 +chrX 1682113 . C . . END=1682186 GT:DP:GQ:MIN_DP:PL 0/0:16:20:14:0,20,347 +chrX 1682187 . CTG C, 166.09 . AS_QUALapprox=|180|0;AS_VarDP=0|4|0;DP=26;QUALapprox=180;RAW_GT_COUNT=0,0,1;RAW_MQandDP=80219,26;VarDP=4 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,4,0:4:12:0|1:1682187_CTG_C:180,12,0,181,13,182:1682187:0,0,3,1 +chrX 1682190 . T . . END=1682190 GT:DP:GQ:MIN_DP:PL 0/0:20:42:20:0,42,630 +chrX 1682191 . T C, 166.13 . AS_QUALapprox=|180|0;AS_VarDP=0|4|0;DP=25;QUALapprox=180;RAW_GT_COUNT=0,0,1;RAW_MQandDP=79690,25;VarDP=4 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,4,0:4:12:0|1:1682187_CTG_C:180,12,0,181,13,182:1682187:0,0,3,1 +chrX 1682192 . T . . END=1682200 GT:DP:GQ:MIN_DP:PL 0/0:20:39:19:0,39,585 +chrX 1682201 . C CTCTT,CTCTCTCTTTCTCTCTT, 607.99 . AS_QUALapprox=|622|410|0;AS_VarDP=1|4|0|0;BaseQRankSum=1.282;DP=29;MQRankSum=0.000;QUALapprox=622;RAW_GT_COUNT=0,0,1;RAW_MQandDP=94090,29;ReadPosRankSum=1.282;VarDP=5 GT:AD:DP:GQ:PL:SB 1/1:1,4,0,0:5:22:622,22,0,212,32,443,443,63,364,546:0,1,3,1 +chrX 1682202 . T . . END=1682216 GT:DP:GQ:MIN_DP:PL 0/0:45:48:45:0,48,1054 +chrX 1682217 . T . . END=1682217 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,215 +chrX 1682218 . T . . END=1682224 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,114,1710 +chrX 1682225 . C . . END=1682225 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,1036 +chrX 1682226 . T . . END=1682228 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,114,1710 +chrX 1682229 . T . . END=1682229 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,1020 +chrX 1682230 . T . . END=1682230 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,117,1755 +chrX 1682231 . C . . END=1682231 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,313 +chrX 1682232 . T . . END=1682320 GT:DP:GQ:MIN_DP:PL 0/0:39:25:38:0,25,891 +chrX 1682321 . CTCTTTCTCTCTT C, 658.60 . AS_QUALapprox=|666|0;AS_VarDP=16|17|0;BaseQRankSum=1.005;DP=40;MQRankSum=0.000;QUALapprox=666;RAW_GT_COUNT=0,1,0;RAW_MQandDP=143425,40;ReadPosRankSum=0.554;VarDP=33 GT:AD:DP:GQ:PL:SB 0/1:16,17,0:33:99:666,0,588,714,640,1354:8,8,8,9 +chrX 1682334 . T . . END=1682459 GT:DP:GQ:MIN_DP:PL 0/0:47:52:47:0,52,1203 +chrX 1682460 . T C, 686.64 . AS_QUALapprox=|694|0;AS_VarDP=28|28|0;BaseQRankSum=-0.156;DP=61;MQRankSum=-0.964;QUALapprox=694;RAW_GT_COUNT=0,1,0;RAW_MQandDP=217849,61;ReadPosRankSum=-0.550;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:28,28,0:56:99:694,0,723,778,807,1585:9,19,12,16 +chrX 1682461 . G . . END=1682496 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1682497 . G A, 1980.06 . AS_QUALapprox=|1994|0;AS_VarDP=0|62|0;DP=66;QUALapprox=1994;RAW_GT_COUNT=0,0,1;RAW_MQandDP=235849,66;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:0,62,0:62:99:1994,185,0,1994,185,1994:0,0,27,35 +chrX 1682498 . T . . END=1684242 GT:DP:GQ:MIN_DP:PL 0/0:60:53:60:0,53,1419 +chrX 1684243 . T C, 1865.06 . AS_QUALapprox=|1879|0;AS_VarDP=0|60|0;DP=62;QUALapprox=1879;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:1879,178,0,1879,178,1879:0,0,29,31 +chrX 1684244 . T . . END=1684326 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1684327 . C A, 1066.64 . AS_QUALapprox=|1074|0;AS_VarDP=27|38|0;BaseQRankSum=-0.117;DP=66;MQRankSum=0.000;QUALapprox=1074;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=-2.237;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:27,38,0:65:99:1074,0,684,1154,798,1952:11,16,18,20 +chrX 1684328 . A . . END=1684780 GT:DP:GQ:MIN_DP:PL 0/0:52:91:52:0,91,1380 +chrX 1684781 . C A, 472.64 . AS_QUALapprox=|480|0;AS_VarDP=24|19|0;BaseQRankSum=-2.620;DP=45;MQRankSum=0.000;QUALapprox=480;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=0.184;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:24,19,0:43:99:480,0,705,552,762,1314:11,13,5,14 +chrX 1684782 . T . . END=1685000 GT:DP:GQ:MIN_DP:PL 0/0:52:86:52:0,86,1355 +chrX 1685001 . G A, 711.64 . AS_QUALapprox=|719|0;AS_VarDP=37|29|0;BaseQRankSum=-0.239;DP=66;MQRankSum=-0.614;QUALapprox=719;RAW_GT_COUNT=0,1,0;RAW_MQandDP=114563,66;ReadPosRankSum=1.131;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:37,29,0:66:99:719,0,978,830,1065,1895:19,18,18,11 +chrX 1685002 . G . . END=1685112 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1685113 . G A, 833.64 . AS_QUALapprox=|841|0;AS_VarDP=35|32|0;BaseQRankSum=0.977;DP=72;MQRankSum=0.165;QUALapprox=841;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147321,72;ReadPosRankSum=-0.716;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:35,32,0:67:99:841,0,877,946,973,1919:18,17,14,18 +chrX 1685114 . T . . END=1685547 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,113,1438 +chrX 1685548 . A G, 913.64 . AS_QUALapprox=|921|0;AS_VarDP=31|34|0;BaseQRankSum=0.157;DP=66;MQRankSum=0.000;QUALapprox=921;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=0.013;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:31,34,0:65:99:921,0,818,1014,920,1934:17,14,17,17 +chrX 1685549 . C . . END=1686003 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,104,1635 +chrX 1686004 . G T, 448.64 . AS_QUALapprox=|456|0;AS_VarDP=28|17|0;BaseQRankSum=1.408;DP=47;MQRankSum=-3.785;QUALapprox=456;RAW_GT_COUNT=0,1,0;RAW_MQandDP=85863,47;ReadPosRankSum=0.972;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:28,17,0:45:99:456,0,793,540,844,1384:12,16,9,8 +chrX 1686005 . C . . END=1686634 GT:DP:GQ:MIN_DP:PL 0/0:53:35:20:0,35,606 +chrX 1686635 . C T, 795.64 . AS_QUALapprox=|803|0;AS_VarDP=26|29|0;BaseQRankSum=0.604;DP=56;MQRankSum=1.093;QUALapprox=803;RAW_GT_COUNT=0,1,0;RAW_MQandDP=200116,56;ReadPosRankSum=2.074;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:26,29,0:55:99:803,0,673,881,760,1641:12,14,16,13 +chrX 1686636 . A . . END=1686686 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1686687 . T C, 769.64 . AS_QUALapprox=|777|0;AS_VarDP=27|30|0;BaseQRankSum=-1.303;DP=58;MQRankSum=0.000;QUALapprox=777;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-1.351;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:27,30,0:57:99:777,0,708,858,798,1655:15,12,17,13 +chrX 1686688 . G . . END=1687266 GT:DP:GQ:MIN_DP:PL 0/0:58:46:58:0,46,799 +chrX 1687267 . G . . END=1687267 GT:DP:GQ:MIN_DP:PL 0/0:29:0:29:0,0,720 +chrX 1687268 . A . . END=1687268 GT:DP:GQ:MIN_DP:PL 0/0:32:61:32:0,61,1003 +chrX 1687269 . G . . END=1687271 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,665 +chrX 1687272 . A . . END=1687274 GT:DP:GQ:MIN_DP:PL 0/0:28:49:28:0,49,863 +chrX 1687275 . C . . END=1687278 GT:DP:GQ:MIN_DP:PL 0/0:27:0:27:0,0,228 +chrX 1687279 . A . . END=1687279 GT:DP:GQ:MIN_DP:PL 0/0:32:63:32:0,63,945 +chrX 1687280 . T . . END=1687284 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,0 +chrX 1687285 . T TAAAAAAAAA, 745.03 . AS_QUALapprox=|759|0;AS_VarDP=0|17|0;DP=22;QUALapprox=759;RAW_GT_COUNT=0,0,1;RAW_MQandDP=75501,22;VarDP=17 GT:AD:DP:GQ:PL:SB 1/1:0,17,0:17:51:759,51,0,760,51,760:0,0,8,9 +chrX 1687286 . A . . END=1687303 GT:DP:GQ:MIN_DP:PL 0/0:34:53:34:0,53,990 +chrX 1687304 . G . . END=1687309 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,683 +chrX 1687310 . A . . END=1687310 GT:DP:GQ:MIN_DP:PL 0/0:39:68:39:0,68,1126 +chrX 1687311 . C . . END=1687311 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,868 +chrX 1687312 . A . . END=1687312 GT:DP:GQ:MIN_DP:PL 0/0:38:75:38:0,75,1111 +chrX 1687313 . T . . END=1687313 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,902 +chrX 1687314 . G . . END=1687315 GT:DP:GQ:MIN_DP:PL 0/0:38:20:37:0,20,1011 +chrX 1687316 . T . . END=1687316 GT:DP:GQ:MIN_DP:PL 0/0:37:17:37:0,17,1038 +chrX 1687317 . G . . END=1687493 GT:DP:GQ:MIN_DP:PL 0/0:38:21:35:0,21,943 +chrX 1687494 . T C, 364.64 . AS_QUALapprox=|372|0;AS_VarDP=13|15|0;BaseQRankSum=-2.214;DP=30;MQRankSum=-0.343;QUALapprox=372;RAW_GT_COUNT=0,1,0;RAW_MQandDP=102357,30;ReadPosRankSum=1.406;VarDP=28 GT:AD:DP:GQ:PL:SB 0/1:13,15,0:28:99:372,0,368,411,413,824:7,6,9,6 +chrX 1687495 . C . . END=1687578 GT:DP:GQ:MIN_DP:PL 0/0:20:24:11:0,24,338 +chrX 1687579 . C CAAAAA,CAAAAAA,CAAAAAAA,CAAAAAAAA, 1051.02 . AS_QUALapprox=|557|1000|978|600|0;AS_VarDP=0|0|7|2|0|0;DP=32;QUALapprox=1068;RAW_GT_COUNT=0,0,1;RAW_MQandDP=103306,32;VarDP=9 GT:AD:DP:GQ:PL:SB 2/3:0,0,7,2,0,0:9:65:1068,574,511,143,125,68,165,142,0,90,532,338,65,141,468,595,474,133,156,420,522:0,0,7,2 +chrX 1687580 . A . . END=1687598 GT:DP:GQ:MIN_DP:PL 0/0:30:63:30:0,63,909 +chrX 1687599 . C A, 497.64 . AS_QUALapprox=|505|0;AS_VarDP=12|21|0;BaseQRankSum=0.324;DP=39;MQRankSum=-1.551;QUALapprox=505;RAW_GT_COUNT=0,1,0;RAW_MQandDP=128506,39;ReadPosRankSum=-1.498;VarDP=33 GT:AD:DP:GQ:PL:SB 0/1:12,21,0:33:99:505,0,241,540,304,844:6,6,13,8 +chrX 1687600 . C . . END=1687636 GT:DP:GQ:MIN_DP:PL 0/0:43:74:43:0,74,1047 +chrX 1687637 . A G, 1133.64 . AS_QUALapprox=|1141|0;AS_VarDP=22|29|0;BaseQRankSum=0.377;DP=52;MQRankSum=-1.516;QUALapprox=1141;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180689,52;ReadPosRankSum=0.190;VarDP=51 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,29,0:51:99:0|1:1687637_A_G:1141,0,826,1207,914,2121:1687637:13,9,18,11 +chrX 1687638 . A . . END=1687650 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,118,1603 +chrX 1687651 . G A, 1311.64 . AS_QUALapprox=|1319|0;AS_VarDP=22|33|0;BaseQRankSum=3.180;DP=56;MQRankSum=-1.419;QUALapprox=1319;RAW_GT_COUNT=0,1,0;RAW_MQandDP=195764,56;ReadPosRankSum=-0.507;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,33,0:55:99:0|1:1687637_A_G:1319,0,824,1386,923,2309:1687637:13,9,20,13 +chrX 1687652 . G . . END=1687654 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 1687655 . A G, 1269.64 . AS_QUALapprox=|1277|0;AS_VarDP=22|32|0;BaseQRankSum=-0.217;DP=55;MQRankSum=-1.441;QUALapprox=1277;RAW_GT_COUNT=0,1,0;RAW_MQandDP=192164,55;ReadPosRankSum=-0.569;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,32,0:54:99:0|1:1687637_A_G:1277,0,827,1344,923,2267:1687637:13,9,20,12 +chrX 1687656 . T . . END=1687803 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 1687804 . A G, 694.64 . AS_QUALapprox=|702|0;AS_VarDP=43|29|0;BaseQRankSum=-1.425;DP=76;MQRankSum=0.000;QUALapprox=702;RAW_GT_COUNT=0,1,0;RAW_MQandDP=273600,76;ReadPosRankSum=1.522;VarDP=72 GT:AD:DP:GQ:PL:SB 0/1:43,29,0:72:99:702,0,1238,831,1324,2155:25,18,17,12 +chrX 1687805 . A . . END=1688101 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 1688102 . T G, 2480.06 . AS_QUALapprox=|2494|0;AS_VarDP=0|78|0;DP=83;QUALapprox=2494;RAW_GT_COUNT=0,0,1;RAW_MQandDP=298800,83;VarDP=78 GT:AD:DP:GQ:PL:SB 1/1:0,78,0:78:99:2494,234,0,2494,234,2494:0,0,35,43 +chrX 1688103 . G . . END=1688172 GT:DP:GQ:MIN_DP:PL 0/0:73:99:73:0,120,1800 +chrX 1688173 . T A, 1167.64 . AS_QUALapprox=|1175|0;AS_VarDP=32|42|0;BaseQRankSum=-1.142;DP=75;MQRankSum=0.000;QUALapprox=1175;RAW_GT_COUNT=0,1,0;RAW_MQandDP=270000,75;ReadPosRankSum=0.142;VarDP=74 GT:AD:DP:GQ:PL:SB 0/1:32,42,0:74:99:1175,0,860,1271,986,2257:14,18,23,19 +chrX 1688174 . T . . END=1688284 GT:DP:GQ:MIN_DP:PL 0/0:73:99:73:0,120,1800 +chrX 1688285 . C T, 822.64 . AS_QUALapprox=|830|0;AS_VarDP=35|31|0;BaseQRankSum=0.735;DP=70;MQRankSum=0.000;QUALapprox=830;RAW_GT_COUNT=0,1,0;RAW_MQandDP=252000,70;ReadPosRankSum=-0.861;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:35,31,0:66:99:830,0,923,934,1016,1951:20,15,13,18 +chrX 1688286 . G . . END=1688515 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 1688516 . C A, 2078.06 . AS_QUALapprox=|2092|0;AS_VarDP=1|68|0;BaseQRankSum=-0.578;DP=73;MQRankSum=0.000;QUALapprox=2092;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;ReadPosRankSum=1.080;VarDP=69 GT:AD:DP:GQ:PL:SB 1/1:1,68,0:69:99:2092,171,0,2095,203,2127:1,0,32,36 +chrX 1688517 . A . . END=1689116 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,102,1623 +chrX 1689117 . G A, 838.64 . AS_QUALapprox=|846|0;AS_VarDP=23|31|0;BaseQRankSum=0.813;DP=56;MQRankSum=0.000;QUALapprox=846;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-0.788;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:23,31,0:54:99:846,0,538,914,631,1545:7,16,9,22 +chrX 1689118 . C . . END=1689186 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,117,1755 +chrX 1689187 . CAA C, 1001.60 . AS_QUALapprox=|1009|0;AS_VarDP=17|26|0;BaseQRankSum=0.351;DP=56;MQRankSum=-0.761;QUALapprox=1009;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201025,56;ReadPosRankSum=-0.391;VarDP=43 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:17,26,0:43:99:0|1:1689187_CAA_C:1009,0,623,1060,702,1762:1689187:3,14,9,17 +chrX 1689190 . A . . END=1689196 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,120,1800 +chrX 1689197 . A T, 1022.64 . AS_QUALapprox=|1030|0;AS_VarDP=20|27|0;BaseQRankSum=-1.047;DP=50;MQRankSum=-0.818;QUALapprox=1030;RAW_GT_COUNT=0,1,0;RAW_MQandDP=179425,50;ReadPosRankSum=0.614;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:20,27,0:47:99:0|1:1689187_CAA_C:1030,0,697,1090,778,1868:1689187:6,14,10,17 +chrX 1689198 . A . . END=1689230 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1569 +chrX 1689231 . C T, 779.64 . AS_QUALapprox=|787|0;AS_VarDP=34|28|0;BaseQRankSum=2.113;DP=64;MQRankSum=0.476;QUALapprox=787;RAW_GT_COUNT=0,1,0;RAW_MQandDP=221116,64;ReadPosRankSum=2.045;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:34,28,0:62:99:787,0,931,889,1015,1904:20,14,13,15 +chrX 1689232 . T . . END=1689530 GT:DP:GQ:MIN_DP:PL 0/0:58:64:58:0,64,1409 +chrX 1689531 . AATTTATTTTTT A, 515.60 . AS_QUALapprox=|523|0;AS_VarDP=27|22|0;BaseQRankSum=1.485;DP=60;MQRankSum=0.249;QUALapprox=523;RAW_GT_COUNT=0,1,0;RAW_MQandDP=203829,60;ReadPosRankSum=-0.407;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:27,22,0:49:99:523,0,993,603,1058,1661:8,19,11,11 +chrX 1689543 . A . . END=1689658 GT:DP:GQ:MIN_DP:PL 0/0:56:68:56:0,68,1359 +chrX 1689659 . T C, 632.64 . AS_QUALapprox=|640|0;AS_VarDP=29|26|0;BaseQRankSum=0.022;DP=57;MQRankSum=-0.147;QUALapprox=640;RAW_GT_COUNT=0,1,0;RAW_MQandDP=149164,57;ReadPosRankSum=0.076;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:29,26,0:55:99:640,0,734,726,811,1537:15,14,15,11 +chrX 1689660 . G . . END=1689720 GT:DP:GQ:MIN_DP:PL 0/0:28:20:25:0,20,745 +chrX 1689721 . T . . END=1689721 GT:DP:GQ:MIN_DP:PL 0/0:25:0:25:0,0,530 +chrX 1689722 . C . . END=1689724 GT:DP:GQ:MIN_DP:PL 0/0:22:54:22:0,54,810 +chrX 1689725 . C . . END=1689725 GT:DP:GQ:MIN_DP:PL 0/0:22:17:22:0,17,606 +chrX 1689726 . C . . END=1689727 GT:DP:GQ:MIN_DP:PL 0/0:23:44:23:0,44,639 +chrX 1689728 . A . . END=1689728 GT:DP:GQ:MIN_DP:PL 0/0:22:0:22:0,0,306 +chrX 1689729 . C . . END=1689732 GT:DP:GQ:MIN_DP:PL 0/0:24:40:24:0,40,671 +chrX 1689733 . A . . END=1689733 GT:DP:GQ:MIN_DP:PL 0/0:23:0:23:0,0,449 +chrX 1689734 . C . . END=1689735 GT:DP:GQ:MIN_DP:PL 0/0:24:44:24:0,44,700 +chrX 1689736 . A . . END=1689736 GT:DP:GQ:MIN_DP:PL 0/0:23:19:23:0,19,600 +chrX 1689737 . C . . END=1689738 GT:DP:GQ:MIN_DP:PL 0/0:23:28:21:0,28,640 +chrX 1689739 . G . . END=1689739 GT:DP:GQ:MIN_DP:PL 0/0:22:7:22:0,7,606 +chrX 1689740 . T . . END=1689744 GT:DP:GQ:MIN_DP:PL 0/0:23:34:22:0,34,700 +chrX 1689745 . A . . END=1689745 GT:DP:GQ:MIN_DP:PL 0/0:24:0:24:0,0,636 +chrX 1689746 . G . . END=1689817 GT:DP:GQ:MIN_DP:PL 0/0:33:63:33:0,63,720 +chrX 1689818 . G A, 529.64 . AS_QUALapprox=|537|0;AS_VarDP=22|19|0;BaseQRankSum=0.978;DP=41;MQRankSum=-1.027;QUALapprox=537;RAW_GT_COUNT=0,1,0;RAW_MQandDP=146304,41;ReadPosRankSum=1.059;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:22,19,0:41:99:537,0,631,603,689,1292:12,10,12,7 +chrX 1689819 . T . . END=1690093 GT:DP:GQ:MIN_DP:PL 0/0:59:97:59:0,97,1335 +chrX 1690094 . C T, 949.64 . AS_QUALapprox=|957|0;AS_VarDP=28|35|0;BaseQRankSum=0.148;DP=69;MQRankSum=0.000;QUALapprox=957;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=-0.263;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:28,35,0:63:99:957,0,724,1041,829,1870:12,16,19,16 +chrX 1690095 . C . . END=1690421 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1690422 . A AAAT, 962.60 . AS_QUALapprox=|970|0;AS_VarDP=23|25|0;BaseQRankSum=-1.292;DP=57;MQRankSum=0.000;QUALapprox=970;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-0.816;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:23,25,0:48:99:970,0,873,1039,948,1988:7,16,12,13 +chrX 1690423 . A . . END=1690698 GT:DP:GQ:MIN_DP:PL 0/0:57:70:57:0,70,1460 +chrX 1690699 . A . . END=1690699 GT:DP:GQ:MIN_DP:PL 0/0:57:0:57:0,0,1414 +chrX 1690700 . G . . END=1690704 GT:DP:GQ:MIN_DP:PL 0/0:58:32:57:0,32,1582 +chrX 1690705 . G . . END=1690705 GT:DP:GQ:MIN_DP:PL 0/0:51:14:51:0,14,1323 +chrX 1690706 . T . . END=1690706 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,114,1710 +chrX 1690707 . G . . END=1690707 GT:DP:GQ:MIN_DP:PL 0/0:51:14:51:0,14,1364 +chrX 1690708 . T . . END=1690708 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,111,1665 +chrX 1690709 . G . . END=1690709 GT:DP:GQ:MIN_DP:PL 0/0:52:17:52:0,17,1399 +chrX 1690710 . T . . END=1690710 GT:DP:GQ:MIN_DP:PL 0/0:57:96:57:0,96,1440 +chrX 1690711 . G GGTTTTTTTTTTTTTTTTTTTT, 800.60 . AS_QUALapprox=|808|0;AS_VarDP=24|23|0;BaseQRankSum=-0.691;DP=52;MQRankSum=-1.511;QUALapprox=808;RAW_GT_COUNT=0,1,0;RAW_MQandDP=179855,52;ReadPosRankSum=-1.671;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,23,0:47:99:0|1:1690711_G_GGTTTTTTTTTTTTTTTTTTTT:808,0,902,881,971,1852:1690711:15,9,10,13 +chrX 1690712 . T . . END=1690714 GT:DP:GQ:MIN_DP:PL 0/0:37:72:37:0,72,1080 +chrX 1690715 . G T, 549.64 . AS_QUALapprox=|557|0;AS_VarDP=24|15|0;BaseQRankSum=-0.840;DP=40;MQRankSum=-2.087;QUALapprox=557;RAW_GT_COUNT=0,1,0;RAW_MQandDP=136655,40;ReadPosRankSum=0.188;VarDP=39 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,15,0:39:99:0|1:1690711_G_GGTTTTTTTTTTTTTTTTTTTT:557,0,925,630,970,1600:1690711:15,9,7,8 +chrX 1690716 . T . . END=1690734 GT:DP:GQ:MIN_DP:PL 0/0:47:63:47:0,63,945 +chrX 1690735 . G . . END=1690744 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,229 +chrX 1690745 . T . . END=1690747 GT:DP:GQ:MIN_DP:PL 0/0:39:81:39:0,81,1215 +chrX 1690748 . C . . END=1690750 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,495 +chrX 1690751 . T . . END=1690751 GT:DP:GQ:MIN_DP:PL 0/0:37:84:37:0,84,1260 +chrX 1690752 . C . . END=1690752 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,680 +chrX 1690753 . T . . END=1690754 GT:DP:GQ:MIN_DP:PL 0/0:38:84:38:0,84,1260 +chrX 1690755 . G . . END=1690755 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,655 +chrX 1690756 . T . . END=1690892 GT:DP:GQ:MIN_DP:PL 0/0:44:62:44:0,62,834 +chrX 1690893 . ATTAT A, 559.60 . AS_QUALapprox=|567|0;AS_VarDP=17|15|0;BaseQRankSum=0.000;DP=43;MQRankSum=0.000;QUALapprox=567;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154449,43;ReadPosRankSum=-1.682;VarDP=32 GT:AD:DP:GQ:PL:SB 0/1:17,15,0:32:99:567,0,668,618,714,1332:9,8,9,6 +chrX 1690898 . T . . END=1690934 GT:DP:GQ:MIN_DP:PL 0/0:43:96:43:0,96,1306 +chrX 1690935 . C T, 580.64 . AS_QUALapprox=|588|0;AS_VarDP=30|22|0;BaseQRankSum=-0.301;DP=57;MQRankSum=0.000;QUALapprox=588;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=1.381;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:30,22,0:52:99:588,0,866,679,933,1611:22,8,17,5 +chrX 1690936 . G . . END=1691467 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,114,1761 +chrX 1691468 . CAAGG C, 785.60 . AS_QUALapprox=|793|0;AS_VarDP=26|21|0;BaseQRankSum=0.346;DP=49;MQRankSum=0.000;QUALapprox=793;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=0.525;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,21,0:47:99:0|1:1691468_CAAGG_C:793,0,1029,872,1092,1963:1691468:14,12,12,9 +chrX 1691472 . G GCCTT, 785.60 . AS_QUALapprox=|793|0;AS_VarDP=26|21|0;DP=47;MQRankSum=0.000;QUALapprox=793;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=0.342;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,21,0:47:99:0|1:1691468_CAAGG_C:793,0,1029,872,1092,1963:1691468:14,12,12,9 +chrX 1691473 . G . . END=1692359 GT:DP:GQ:MIN_DP:PL 0/0:58:79:58:0,79,1292 +chrX 1692360 . A G, 664.64 . AS_QUALapprox=|672|0;AS_VarDP=30|27|0;BaseQRankSum=-0.668;DP=57;MQRankSum=0.000;QUALapprox=672;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=0.800;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:30,27,0:57:99:672,0,862,762,942,1705:14,16,14,13 +chrX 1692361 . T . . END=1692395 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1653 +chrX 1692396 . A G, 725.64 . AS_QUALapprox=|733|0;AS_VarDP=33|30|0;BaseQRankSum=-2.510;DP=63;MQRankSum=0.000;QUALapprox=733;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=-0.454;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:33,30,0:63:99:733,0,948,832,1038,1870:16,17,13,17 +chrX 1692397 . G . . END=1692439 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1692440 . G T, 662.64 . AS_QUALapprox=|670|0;AS_VarDP=34|27|0;BaseQRankSum=0.214;DP=63;MQRankSum=0.000;QUALapprox=670;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=-0.102;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:34,27,0:61:99:670,0,898,772,978,1750:13,21,9,18 +chrX 1692441 . G . . END=1692562 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,108,1514 +chrX 1692563 . C CA, 1042.03 . AS_QUALapprox=|1056|0;AS_VarDP=0|41|0;DP=51;QUALapprox=1056;RAW_GT_COUNT=0,0,1;RAW_MQandDP=181600,51;VarDP=41 GT:AD:DP:GQ:PL:SB 1/1:0,41,0:41:99:1056,123,0,1056,123,1056:0,0,24,17 +chrX 1692564 . A . . END=1692611 GT:DP:GQ:MIN_DP:PL 0/0:47:92:47:0,92,1414 +chrX 1692612 . C T, 1570.06 . AS_QUALapprox=|1584|0;AS_VarDP=0|47|0;DP=48;QUALapprox=1584;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1584,141,0,1584,141,1584:0,0,28,19 +chrX 1692613 . T . . END=1692757 GT:DP:GQ:MIN_DP:PL 0/0:47:96:47:0,96,1314 +chrX 1692758 . G T, 649.64 . AS_QUALapprox=|657|0;AS_VarDP=26|18|0;BaseQRankSum=-1.999;DP=46;MQRankSum=0.000;QUALapprox=657;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=-1.716;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,18,0:44:99:0|1:1692758_G_T:657,0,1007,735,1061,1797:1692758:14,12,9,9 +chrX 1692759 . A . . END=1692760 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,109,1316 +chrX 1692761 . C T, 628.64 . AS_QUALapprox=|636|0;AS_VarDP=26|17|0;BaseQRankSum=0.660;DP=44;MQRankSum=0.000;QUALapprox=636;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=-1.292;VarDP=43 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,17,0:43:99:0|1:1692758_G_T:636,0,1010,714,1061,1775:1692758:14,12,8,9 +chrX 1692762 . T . . END=1692832 GT:DP:GQ:MIN_DP:PL 0/0:43:48:43:0,48,720 +chrX 1692833 . A G, 557.64 . AS_QUALapprox=|565|0;AS_VarDP=16|22|0;BaseQRankSum=-1.878;DP=45;MQRankSum=0.883;QUALapprox=565;RAW_GT_COUNT=0,1,0;RAW_MQandDP=152000,45;ReadPosRankSum=0.873;VarDP=38 GT:AD:DP:GQ:PL:SB 0/1:16,22,0:38:99:565,0,432,613,498,1111:7,9,16,6 +chrX 1692834 . T . . END=1692854 GT:DP:GQ:MIN_DP:PL 0/0:50:78:50:0,78,1170 +chrX 1692855 . G . . END=1692855 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,889 +chrX 1692856 . A . . END=1692941 GT:DP:GQ:MIN_DP:PL 0/0:35:21:34:0,21,919 +chrX 1692942 . T A, 325.64 . AS_QUALapprox=|333|0;AS_VarDP=27|14|0;BaseQRankSum=-2.437;DP=41;MQRankSum=0.772;QUALapprox=333;RAW_GT_COUNT=0,1,0;RAW_MQandDP=145600,41;ReadPosRankSum=0.578;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:27,14,0:41:99:333,0,815,415,857,1272:11,16,6,8 +chrX 1692943 . G . . END=1693001 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,99,1281 +chrX 1693002 . AT A, 601.60 . AS_QUALapprox=|609|0;AS_VarDP=22|24|0;BaseQRankSum=-1.045;DP=47;MQRankSum=0.062;QUALapprox=609;RAW_GT_COUNT=0,1,0;RAW_MQandDP=168506,47;ReadPosRankSum=2.061;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:22,24,0:46:99:609,0,537,675,609,1284:13,9,12,12 +chrX 1693004 . T . . END=1693220 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,107,1578 +chrX 1693221 . A G, 612.64 . AS_QUALapprox=|620|0;AS_VarDP=19|24|0;BaseQRankSum=-0.266;DP=46;MQRankSum=0.000;QUALapprox=620;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=-0.061;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:19,24,0:43:99:620,0,482,677,553,1231:10,9,13,11 +chrX 1693222 . C . . END=1693403 GT:DP:GQ:MIN_DP:PL 0/0:73:99:73:0,120,1800 +chrX 1693404 . CT C, 687.60 . AS_QUALapprox=|695|0;AS_VarDP=25|31|0;BaseQRankSum=-1.170;DP=71;MQRankSum=-0.862;QUALapprox=695;RAW_GT_COUNT=0,1,0;RAW_MQandDP=253600,71;ReadPosRankSum=-0.110;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:25,31,0:56:99:695,0,480,769,573,1342:15,10,16,15 +chrX 1693406 . T . . END=1693486 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,112,1569 +chrX 1693487 . C T, 522.64 . AS_QUALapprox=|530|0;AS_VarDP=28|22|0;BaseQRankSum=-1.077;DP=55;MQRankSum=1.295;QUALapprox=530;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194516,55;ReadPosRankSum=-0.274;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:28,22,0:50:99:530,0,759,614,824,1438:18,10,10,12 +chrX 1693488 . T . . END=1693853 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,113,1792 +chrX 1693854 . A C, 785.64 . AS_QUALapprox=|793|0;AS_VarDP=35|30|0;BaseQRankSum=0.957;DP=69;MQRankSum=0.000;QUALapprox=793;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=-0.533;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:35,30,0:65:99:793,0,917,898,1006,1904:13,22,15,15 +chrX 1693855 . T . . END=1693891 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 1693892 . G A, 746.64 . AS_QUALapprox=|754|0;AS_VarDP=34|32|0;BaseQRankSum=-1.851;DP=69;MQRankSum=0.000;QUALapprox=754;RAW_GT_COUNT=0,1,0;RAW_MQandDP=246244,69;ReadPosRankSum=-1.540;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:34,32,0:66:99:754,0,914,856,1009,1866:16,18,18,14 +chrX 1693893 . C . . END=1693905 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 1693906 . C T, 682.64 . AS_QUALapprox=|690|0;AS_VarDP=38|28|0;BaseQRankSum=-0.621;DP=70;MQRankSum=0.000;QUALapprox=690;RAW_GT_COUNT=0,1,0;RAW_MQandDP=249844,70;ReadPosRankSum=0.578;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:38,28,0:66:99:690,0,1038,804,1121,1926:20,18,14,14 +chrX 1693907 . G . . END=1694070 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 1694071 . G A, 951.64 . AS_QUALapprox=|959|0;AS_VarDP=27|34|0;BaseQRankSum=1.779;DP=61;MQRankSum=0.000;QUALapprox=959;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=0.596;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:27,34,0:61:99:959,0,660,1039,762,1802:15,12,19,15 +chrX 1694072 . C . . END=1694600 GT:DP:GQ:MIN_DP:PL 0/0:65:70:65:0,70,1304 +chrX 1694601 . T G, 1175.64 . AS_QUALapprox=|1183|0;AS_VarDP=32|31|0;BaseQRankSum=1.002;DP=64;MQRankSum=0.000;QUALapprox=1183;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=-2.077;VarDP=63 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:32,31,0:63:99:0|1:1694601_T_G:1183,0,1193,1279,1287,2566:1694601:17,15,14,17 +chrX 1694602 . A . . END=1694605 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1694606 . T C, 1207.64 . AS_QUALapprox=|1215|0;AS_VarDP=32|32|0;BaseQRankSum=-0.830;DP=65;MQRankSum=0.000;QUALapprox=1215;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=-1.922;VarDP=64 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:32,32,0:64:99:0|1:1694601_T_G:1215,0,1190,1311,1287,2597:1694601:17,15,15,17 +chrX 1694607 . G . . END=1694791 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,101,1490 +chrX 1694792 . C G, 798.64 . AS_QUALapprox=|806|0;AS_VarDP=29|30|0;BaseQRankSum=-0.936;DP=62;MQRankSum=0.000;QUALapprox=806;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=-0.326;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:29,30,0:59:99:806,0,786,893,876,1769:17,12,19,11 +chrX 1694793 . C . . END=1694961 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,120,1800 +chrX 1694962 . T A, 857.64 . AS_QUALapprox=|865|0;AS_VarDP=32|32|0;BaseQRankSum=0.012;DP=67;MQRankSum=0.000;QUALapprox=865;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=0.094;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:32,32,0:64:99:865,0,866,961,961,1922:20,12,14,18 +chrX 1694963 . A . . END=1695045 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 1695046 . T G, 313.64 . AS_QUALapprox=|321|0;AS_VarDP=58|17|0;BaseQRankSum=-0.096;DP=77;MQRankSum=0.000;QUALapprox=321;RAW_GT_COUNT=0,1,0;RAW_MQandDP=277200,77;ReadPosRankSum=0.367;VarDP=75 GT:AD:DP:GQ:PL:SB 0/1:58,17,0:75:99:321,0,1670,495,1720,2215:39,19,10,7 +chrX 1695047 . T . . END=1695325 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1695326 . A G, 877.64 . AS_QUALapprox=|885|0;AS_VarDP=26|36|0;BaseQRankSum=-3.123;DP=67;MQRankSum=0.000;QUALapprox=885;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=-0.043;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:26,36,0:62:99:885,0,687,963,796,1758:10,16,17,19 +chrX 1695327 . C . . END=1695380 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1695381 . T C, 800.64 . AS_QUALapprox=|808|0;AS_VarDP=31|29|0;BaseQRankSum=-1.451;DP=63;MQRankSum=0.000;QUALapprox=808;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=1.746;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:31,29,0:60:99:808,0,895,901,982,1883:11,20,11,18 +chrX 1695382 . A . . END=1695393 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 1695394 . A G, 845.64 . AS_QUALapprox=|853|0;AS_VarDP=32|32|0;BaseQRankSum=-2.295;DP=69;MQRankSum=0.000;QUALapprox=853;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=0.430;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:32,32,0:64:99:853,0,920,950,1016,1966:12,20,14,18 +chrX 1695395 . T . . END=1695485 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 1695486 . T C, 667.64 . AS_QUALapprox=|675|0;AS_VarDP=35|26|0;BaseQRankSum=-0.410;DP=65;MQRankSum=0.000;QUALapprox=675;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=-0.948;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:35,26,0:61:99:675,0,1003,781,1081,1861:17,18,12,14 +chrX 1695487 . C . . END=1695847 GT:DP:GQ:MIN_DP:PL 0/0:44:76:44:0,76,954 +chrX 1695848 . A G, 503.64 . AS_QUALapprox=|511|0;AS_VarDP=17|18|0;BaseQRankSum=1.138;DP=39;MQRankSum=0.000;QUALapprox=511;RAW_GT_COUNT=0,1,0;RAW_MQandDP=140400,39;ReadPosRankSum=-0.891;VarDP=35 GT:AD:DP:GQ:PL:SB 0/1:17,18,0:35:99:511,0,456,562,510,1071:8,9,12,6 +chrX 1695849 . T . . END=1695917 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,102,1206 +chrX 1695918 . C CTT, 452.60 . AS_QUALapprox=|460|0;AS_VarDP=5|21|0;BaseQRankSum=1.118;DP=43;MQRankSum=-0.390;QUALapprox=460;RAW_GT_COUNT=0,1,0;RAW_MQandDP=152800,43;ReadPosRankSum=0.228;VarDP=26 GT:AD:DP:GQ:PL:SB 0/1:5,21,0:26:74:460,0,74,475,136,611:0,5,16,5 +chrX 1695919 . T . . END=1695938 GT:DP:GQ:MIN_DP:PL 0/0:48:39:48:0,39,585 +chrX 1695939 . G . . END=1695941 GT:DP:GQ:MIN_DP:PL 0/0:29:0:29:0,0,0 +chrX 1695942 . A . . END=1695944 GT:DP:GQ:MIN_DP:PL 0/0:21:38:20:0,38,589 +chrX 1695945 . G . . END=1695945 GT:DP:GQ:MIN_DP:PL 0/0:18:19:18:0,19,526 +chrX 1695946 . A . . END=1696117 GT:DP:GQ:MIN_DP:PL 0/0:24:28:19:0,28,567 +chrX 1696118 . T C, 602.64 . AS_QUALapprox=|610|0;AS_VarDP=17|23|0;BaseQRankSum=-0.551;DP=45;MQRankSum=0.000;QUALapprox=610;RAW_GT_COUNT=0,1,0;RAW_MQandDP=156202,45;ReadPosRankSum=0.534;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:17,23,0:40:99:610,0,451,661,520,1180:12,5,12,11 +chrX 1696119 . A . . END=1696670 GT:DP:GQ:MIN_DP:PL 0/0:59:63:59:0,63,1301 +chrX 1696671 . G . . END=1696716 GT:DP:GQ:MIN_DP:PL 0/0:84:0:84:0,0,1389 +chrX 1696717 . GTAATA G, 572.04 . AS_QUALapprox=|666|0;AS_VarDP=44|19|0;BaseQRankSum=-2.088;DP=86;MQRankSum=-1.184;QUALapprox=666;RAW_GT_COUNT=0,1,0;RAW_MQandDP=281051,86;ReadPosRankSum=-0.451;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:44,19,0:63:99:666,0,1790,813,1862,2758:14,30,10,9 +chrX 1696723 . T . . END=1696809 GT:DP:GQ:MIN_DP:PL 0/0:72:0:72:0,0,759 +chrX 1696810 . C T, 261.04 . AS_QUALapprox=|387|0;AS_VarDP=25|16|0;BaseQRankSum=-1.036;DP=60;MQRankSum=-4.150;QUALapprox=387;RAW_GT_COUNT=0,1,0;RAW_MQandDP=173719,60;ReadPosRankSum=-0.481;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:25,16,0:41:99:387,0,726,500,828,1524:10,15,2,14 +chrX 1696811 . T . . END=1696849 GT:DP:GQ:MIN_DP:PL 0/0:52:0:52:0,0,362 +chrX 1696850 . A . . END=1696896 GT:DP:GQ:MIN_DP:PL 0/0:36:74:36:0,74,1048 +chrX 1696897 . C G, 118.64 . AS_QUALapprox=|126|0;AS_VarDP=32|7|0;BaseQRankSum=1.137;DP=39;MQRankSum=-1.276;QUALapprox=126;RAW_GT_COUNT=0,1,0;RAW_MQandDP=73734,39;ReadPosRankSum=0.275;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:32,7,0:39:99:126,0,905,222,926,1148:14,18,0,7 +chrX 1696898 . A . . END=1697045 GT:DP:GQ:MIN_DP:PL 0/0:20:27:14:0,27,428 +chrX 1697046 . A . . END=1697046 GT:DP:GQ:MIN_DP:PL 0/0:14:17:14:0,17,407 +chrX 1697047 . T . . END=1697058 GT:DP:GQ:MIN_DP:PL 0/0:14:28:13:0,28,417 +chrX 1697059 . T . . END=1697059 GT:DP:GQ:MIN_DP:PL 0/0:13:14:13:0,14,392 +chrX 1697060 . A . . END=1697064 GT:DP:GQ:MIN_DP:PL 0/0:12:36:12:0,36,417 +chrX 1697065 . T . . END=1697065 GT:DP:GQ:MIN_DP:PL 0/0:12:11:12:0,11,348 +chrX 1697066 . T . . END=1697083 GT:DP:GQ:MIN_DP:PL 0/0:13:33:13:0,33,417 +chrX 1697084 . T C, 40.64 . AS_QUALapprox=|48|0;AS_VarDP=12|2|0;BaseQRankSum=0.640;DP=14;MQRankSum=0.416;QUALapprox=48;RAW_GT_COUNT=0,1,0;RAW_MQandDP=16825,14;ReadPosRankSum=1.979;VarDP=14 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:12,2,0:14:48:0|1:1697084_T_C:48,0,472,84,478,562:1697084:1,11,0,2 +chrX 1697085 . C . . END=1697097 GT:DP:GQ:MIN_DP:PL 0/0:14:27:13:0,27,405 +chrX 1697098 . G C, 43.64 . AS_QUALapprox=|51|0;AS_VarDP=11|2|0;BaseQRankSum=0.640;DP=13;MQRankSum=0.555;QUALapprox=51;RAW_GT_COUNT=0,1,0;RAW_MQandDP=15225,13;ReadPosRankSum=1.581;VarDP=13 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:11,2,0:13:51:0|1:1697084_T_C:51,0,441,84,447,531:1697084:1,10,0,2 +chrX 1697099 . A . . END=1697136 GT:DP:GQ:MIN_DP:PL 0/0:11:24:9:0,24,268 +chrX 1697137 . C . . END=1697137 GT:DP:GQ:MIN_DP:PL 0/0:9:0:9:0,0,243 +chrX 1697138 . T . . END=1697144 GT:DP:GQ:MIN_DP:PL 0/0:9:24:9:0,24,268 +chrX 1697145 . G . . END=1697145 GT:DP:GQ:MIN_DP:PL 0/0:9:0:9:0,0,233 +chrX 1697146 . T . . END=1697195 GT:DP:GQ:MIN_DP:PL 0/0:10:27:9:0,27,313 +chrX 1697196 . G . . END=1697196 GT:DP:GQ:MIN_DP:PL 0/0:13:10:13:0,10,354 +chrX 1697197 . C . . END=1697259 GT:DP:GQ:MIN_DP:PL 0/0:16:20:12:0,20,407 +chrX 1697260 . G . . END=1697260 GT:DP:GQ:MIN_DP:PL 0/0:16:13:16:0,13,466 +chrX 1697261 . T . . END=1697269 GT:DP:GQ:MIN_DP:PL 0/0:18:48:18:0,48,720 +chrX 1697270 . T . . END=1697270 GT:DP:GQ:MIN_DP:PL 0/0:18:19:18:0,19,495 +chrX 1697271 . C . . END=1697271 GT:DP:GQ:MIN_DP:PL 0/0:19:32:19:0,32,601 +chrX 1697272 . C . . END=1697272 GT:DP:GQ:MIN_DP:PL 0/0:18:19:18:0,19,556 +chrX 1697273 . T . . END=1697280 GT:DP:GQ:MIN_DP:PL 0/0:18:26:17:0,26,501 +chrX 1697281 . T . . END=1697281 GT:DP:GQ:MIN_DP:PL 0/0:18:19:18:0,19,526 +chrX 1697282 . A . . END=1697288 GT:DP:GQ:MIN_DP:PL 0/0:18:29:17:0,29,536 +chrX 1697289 . C . . END=1697289 GT:DP:GQ:MIN_DP:PL 0/0:18:19:18:0,19,556 +chrX 1697290 . A . . END=1697300 GT:DP:GQ:MIN_DP:PL 0/0:19:22:17:0,22,546 +chrX 1697301 . A . . END=1697302 GT:DP:GQ:MIN_DP:PL 0/0:17:16:17:0,16,481 +chrX 1697303 . T . . END=1697305 GT:DP:GQ:MIN_DP:PL 0/0:17:37:17:0,37,512 +chrX 1697306 . A . . END=1697307 GT:DP:GQ:MIN_DP:PL 0/0:17:16:17:0,16,481 +chrX 1697308 . C . . END=1697308 GT:DP:GQ:MIN_DP:PL 0/0:17:37:17:0,37,532 +chrX 1697309 . T . . END=1697309 GT:DP:GQ:MIN_DP:PL 0/0:18:19:18:0,19,556 +chrX 1697310 . A . . END=1697312 GT:DP:GQ:MIN_DP:PL 0/0:17:26:17:0,26,522 +chrX 1697313 . A . . END=1697314 GT:DP:GQ:MIN_DP:PL 0/0:18:19:18:0,19,536 +chrX 1697315 . A . . END=1697316 GT:DP:GQ:MIN_DP:PL 0/0:18:45:18:0,45,675 +chrX 1697317 . T . . END=1697321 GT:DP:GQ:MIN_DP:PL 0/0:18:16:18:0,16,471 +chrX 1697322 . A . . END=1697322 GT:DP:GQ:MIN_DP:PL 0/0:18:29:18:0,29,556 +chrX 1697323 . C . . END=1697323 GT:DP:GQ:MIN_DP:PL 0/0:18:19:18:0,19,526 +chrX 1697324 . T . . END=1697324 GT:DP:GQ:MIN_DP:PL 0/0:17:42:17:0,42,630 +chrX 1697325 . T . . END=1697327 GT:DP:GQ:MIN_DP:PL 0/0:17:0:17:0,0,427 +chrX 1697328 . C . . END=1697335 GT:DP:GQ:MIN_DP:PL 0/0:17:26:16:0,26,522 +chrX 1697336 . T . . END=1697336 GT:DP:GQ:MIN_DP:PL 0/0:17:16:17:0,16,501 +chrX 1697337 . T . . END=1697750 GT:DP:GQ:MIN_DP:PL 0/0:18:20:14:0,20,338 +chrX 1697751 . C . . END=1697751 GT:DP:GQ:MIN_DP:PL 0/0:11:19:11:0,19,333 +chrX 1697752 . C . . END=1697846 GT:DP:GQ:MIN_DP:PL 0/0:17:20:9:0,20,313 +chrX 1697847 . T . . END=1697847 GT:DP:GQ:MIN_DP:PL 0/0:21:0:21:0,0,542 +chrX 1697848 . A . . END=1697914 GT:DP:GQ:MIN_DP:PL 0/0:19:37:17:0,37,532 +chrX 1697915 . A . . END=1697915 GT:DP:GQ:MIN_DP:PL 0/0:18:19:18:0,19,516 +chrX 1697916 . C . . END=1697927 GT:DP:GQ:MIN_DP:PL 0/0:16:39:15:0,39,467 +chrX 1697928 . C . . END=1697928 GT:DP:GQ:MIN_DP:PL 0/0:15:10:15:0,10,412 +chrX 1697929 . A . . END=1697932 GT:DP:GQ:MIN_DP:PL 0/0:16:36:15:0,36,540 +chrX 1697933 . C . . END=1697934 GT:DP:GQ:MIN_DP:PL 0/0:17:16:17:0,16,481 +chrX 1697935 . T . . END=1697937 GT:DP:GQ:MIN_DP:PL 0/0:18:29:17:0,29,536 +chrX 1697938 . C . . END=1697939 GT:DP:GQ:MIN_DP:PL 0/0:17:13:17:0,13,467 +chrX 1697940 . A . . END=1697945 GT:DP:GQ:MIN_DP:PL 0/0:16:31:16:0,31,446 +chrX 1697946 . A . . END=1697947 GT:DP:GQ:MIN_DP:PL 0/0:16:10:16:0,10,422 +chrX 1697948 . T . . END=1697949 GT:DP:GQ:MIN_DP:PL 0/0:17:26:16:0,26,501 +chrX 1697950 . A . . END=1697950 GT:DP:GQ:MIN_DP:PL 0/0:16:13:16:0,13,467 +chrX 1697951 . T . . END=1697951 GT:DP:GQ:MIN_DP:PL 0/0:14:39:14:0,39,585 +chrX 1697952 . G . . END=1697955 GT:DP:GQ:MIN_DP:PL 0/0:15:10:15:0,10,412 +chrX 1697956 . A . . END=1697956 GT:DP:GQ:MIN_DP:PL 0/0:14:39:14:0,39,585 +chrX 1697957 . G . . END=1697957 GT:DP:GQ:MIN_DP:PL 0/0:13:4:13:0,4,362 +chrX 1697958 . A . . END=1697958 GT:DP:GQ:MIN_DP:PL 0/0:14:39:14:0,39,585 +chrX 1697959 . C . . END=1697959 GT:DP:GQ:MIN_DP:PL 0/0:14:7:14:0,7,397 +chrX 1697960 . T . . END=1697960 GT:DP:GQ:MIN_DP:PL 0/0:15:20:15:0,20,411 +chrX 1697961 . T . . END=1697961 GT:DP:GQ:MIN_DP:PL 0/0:15:10:15:0,10,422 +chrX 1697962 . C . . END=1698031 GT:DP:GQ:MIN_DP:PL 0/0:13:25:13:0,25,348 +chrX 1698032 . A . . END=1698032 GT:DP:GQ:MIN_DP:PL 0/0:10:16:10:0,16,289 +chrX 1698033 . T . . END=1698130 GT:DP:GQ:MIN_DP:PL 0/0:16:28:13:0,28,372 +chrX 1698131 . A . . END=1698131 GT:DP:GQ:MIN_DP:PL 0/0:20:11:20:0,11,556 +chrX 1698132 . T . . END=1698451 GT:DP:GQ:MIN_DP:PL 0/0:25:21:23:0,21,640 +chrX 1698452 . A . . END=1698452 GT:DP:GQ:MIN_DP:PL 0/0:20:0:20:0,0,487 +chrX 1698453 . A . . END=1698454 GT:DP:GQ:MIN_DP:PL 0/0:20:21:20:0,21,547 +chrX 1698455 . A . . END=1698455 GT:DP:GQ:MIN_DP:PL 0/0:18:19:18:0,19,536 +chrX 1698456 . A . . END=1698456 GT:DP:GQ:MIN_DP:PL 0/0:19:45:19:0,45,675 +chrX 1698457 . A . . END=1698457 GT:DP:GQ:MIN_DP:PL 0/0:18:0:18:0,0,428 +chrX 1698458 . G . . END=1698484 GT:DP:GQ:MIN_DP:PL 0/0:15:20:12:0,20,348 +chrX 1698485 . T . . END=1698485 GT:DP:GQ:MIN_DP:PL 0/0:11:8:11:0,8,313 +chrX 1698486 . A . . END=1698487 GT:DP:GQ:MIN_DP:PL 0/0:10:24:10:0,24,360 +chrX 1698488 . T . . END=1698490 GT:DP:GQ:MIN_DP:PL 0/0:11:8:11:0,8,323 +chrX 1698491 . T . . END=1698494 GT:DP:GQ:MIN_DP:PL 0/0:11:24:11:0,24,360 +chrX 1698495 . C . . END=1698495 GT:DP:GQ:MIN_DP:PL 0/0:11:18:11:0,18,293 +chrX 1698496 . G . . END=1698497 GT:DP:GQ:MIN_DP:PL 0/0:10:24:10:0,24,360 +chrX 1698498 . A . . END=1698498 GT:DP:GQ:MIN_DP:PL 0/0:9:13:9:0,13,264 +chrX 1698499 . T . . END=1698504 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,315 +chrX 1698505 . G . . END=1698512 GT:DP:GQ:MIN_DP:PL 0/0:8:10:8:0,10,229 +chrX 1698513 . T . . END=1698513 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,315 +chrX 1698514 . C . . END=1698514 GT:DP:GQ:MIN_DP:PL 0/0:9:2:9:0,2,213 +chrX 1698515 . T . . END=1698515 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,315 +chrX 1698516 . G . . END=1698516 GT:DP:GQ:MIN_DP:PL 0/0:7:7:7:0,7,194 +chrX 1698517 . T . . END=1698517 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,213 +chrX 1698518 . T . . END=1698519 GT:DP:GQ:MIN_DP:PL 0/0:7:0:7:0,0,174 +chrX 1698520 . C . . END=1698521 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,223 +chrX 1698522 . C . . END=1698522 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,209 +chrX 1698523 . C . . END=1698531 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,243 +chrX 1698532 . A . . END=1698553 GT:DP:GQ:MIN_DP:PL 0/0:6:6:6:0,6,139 +chrX 1698554 . C . . END=1698557 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,233 +chrX 1698558 . A . . END=1698558 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,199 +chrX 1698559 . T . . END=1698586 GT:DP:GQ:MIN_DP:PL 0/0:10:24:9:0,24,278 +chrX 1698587 . G . . END=1698587 GT:DP:GQ:MIN_DP:PL 0/0:13:4:13:0,4,382 +chrX 1698588 . A . . END=1698595 GT:DP:GQ:MIN_DP:PL 0/0:14:39:13:0,39,442 +chrX 1698596 . T . . END=1698596 GT:DP:GQ:MIN_DP:PL 0/0:14:17:14:0,17,417 +chrX 1698597 . C . . END=1698609 GT:DP:GQ:MIN_DP:PL 0/0:15:20:14:0,20,462 +chrX 1698610 . G . . END=1698610 GT:DP:GQ:MIN_DP:PL 0/0:15:10:15:0,10,421 +chrX 1698611 . A . . END=1698663 GT:DP:GQ:MIN_DP:PL 0/0:13:22:11:0,22,348 +chrX 1698664 . G . . END=1698664 GT:DP:GQ:MIN_DP:PL 0/0:14:17:14:0,17,427 +chrX 1698665 . A . . END=1698672 GT:DP:GQ:MIN_DP:PL 0/0:15:39:14:0,39,585 +chrX 1698673 . T . . END=1698674 GT:DP:GQ:MIN_DP:PL 0/0:14:7:14:0,7,417 +chrX 1698675 . G . . END=1698687 GT:DP:GQ:MIN_DP:PL 0/0:15:39:14:0,39,477 +chrX 1698688 . A . . END=1698689 GT:DP:GQ:MIN_DP:PL 0/0:15:10:15:0,10,452 +chrX 1698690 . T . . END=1698718 GT:DP:GQ:MIN_DP:PL 0/0:15:20:14:0,20,428 +chrX 1698719 . A . . END=1698719 GT:DP:GQ:MIN_DP:PL 0/0:18:0:18:0,0,477 +chrX 1698720 . C . . END=1698984 GT:DP:GQ:MIN_DP:PL 0/0:22:25:17:0,25,522 +chrX 1698985 . GTAATA G, 0.35 . AS_QUALapprox=|6|0;AS_VarDP=40|3|0;BaseQRankSum=0.895;DP=45;MQRankSum=0.509;QUALapprox=6;RAW_GT_COUNT=0,1,0;RAW_MQandDP=74987,45;ReadPosRankSum=-1.563;VarDP=43 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:40,3,0:43:6:0|1:1698985_GTAATA_G:6,0,1670,126,1680,1806:1698985:18,22,2,1 +chrX 1698991 . T . . END=1698996 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,102,1530 +chrX 1698997 . G A, 356.64 . AS_QUALapprox=|364|0;AS_VarDP=27|12|0;BaseQRankSum=2.025;DP=42;MQRankSum=-2.760;QUALapprox=364;RAW_GT_COUNT=0,1,0;RAW_MQandDP=74589,42;ReadPosRankSum=-1.462;VarDP=39 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:27,12,0:39:99:1|0:1698985_GTAATA_G:364,0,1057,445,1093,1538:1698985:13,14,3,9 +chrX 1698998 . T . . END=1699010 GT:DP:GQ:MIN_DP:PL 0/0:37:67:37:0,67,1062 +chrX 1699011 . C T, 247.64 . AS_QUALapprox=|255|0;AS_VarDP=27|8|0;BaseQRankSum=1.744;DP=35;MQRankSum=-2.274;QUALapprox=255;RAW_GT_COUNT=0,1,0;RAW_MQandDP=70392,35;ReadPosRankSum=-1.985;VarDP=35 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:27,8,0:35:99:1|0:1698985_GTAATA_G:255,0,1110,336,1134,1470:1698985:13,14,3,5 +chrX 1699012 . A G, 247.64 . AS_QUALapprox=|255|0;AS_VarDP=27|8|0;BaseQRankSum=0.270;DP=35;MQRankSum=-2.274;QUALapprox=255;RAW_GT_COUNT=0,1,0;RAW_MQandDP=70392,35;ReadPosRankSum=-2.122;VarDP=35 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:27,8,0:35:99:1|0:1698985_GTAATA_G:255,0,1110,336,1134,1470:1698985:13,14,3,5 +chrX 1699013 . T . . END=1699032 GT:DP:GQ:MIN_DP:PL 0/0:35:87:35:0,87,1305 +chrX 1699033 . A G, 22.64 . AS_QUALapprox=|30|0;AS_VarDP=32|3|0;BaseQRankSum=-1.245;DP=36;MQRankSum=-1.448;QUALapprox=30;RAW_GT_COUNT=0,1,0;RAW_MQandDP=86845,36;ReadPosRankSum=-0.989;VarDP=35 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:32,3,0:35:30:1|0:1698985_GTAATA_G:30,0,1204,126,1213,1339:1698985:15,17,2,1 +chrX 1699034 . T . . END=1699136 GT:DP:GQ:MIN_DP:PL 0/0:49:65:49:0,65,1121 +chrX 1699137 . A C, 883.64 . AS_QUALapprox=|891|0;AS_VarDP=24|34|0;BaseQRankSum=-0.272;DP=60;MQRankSum=-3.363;QUALapprox=891;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198259,60;ReadPosRankSum=1.745;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:24,34,0:58:99:891,0,624,963,725,1688:14,10,18,16 +chrX 1699138 . C . . END=1699175 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1699176 . C G, 1304.64 . AS_QUALapprox=|1312|0;AS_VarDP=23|34|0;BaseQRankSum=-0.273;DP=60;MQRankSum=-2.464;QUALapprox=1312;RAW_GT_COUNT=0,1,0;RAW_MQandDP=203556,60;ReadPosRankSum=0.730;VarDP=57 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,34,0:57:99:0|1:1699176_C_G:1312,0,796,1381,898,2279:1699176:13,10,17,17 +chrX 1699177 . G . . END=1699189 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 1699190 . G C, 1459.64 . AS_QUALapprox=|1467|0;AS_VarDP=22|38|0;BaseQRankSum=-0.217;DP=63;MQRankSum=-2.105;QUALapprox=1467;RAW_GT_COUNT=0,1,0;RAW_MQandDP=214820,63;ReadPosRankSum=-0.220;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,38,0:60:99:0|1:1699176_C_G:1467,0,777,1533,892,2425:1699176:12,10,19,19 +chrX 1699191 . T . . END=1700527 GT:DP:GQ:MIN_DP:PL 0/0:54:87:54:0,87,1235 +chrX 1700528 . T A, 627.64 . AS_QUALapprox=|635|0;AS_VarDP=29|26|0;BaseQRankSum=-0.333;DP=58;MQRankSum=0.000;QUALapprox=635;RAW_GT_COUNT=0,1,0;RAW_MQandDP=207049,58;ReadPosRankSum=0.599;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:29,26,0:55:99:635,0,718,721,796,1517:14,15,13,13 +chrX 1700529 . C . . END=1701064 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,101,1238 +chrX 1701065 . G A, 447.64 . AS_QUALapprox=|455|0;AS_VarDP=29|18|0;BaseQRankSum=-1.470;DP=51;MQRankSum=0.000;QUALapprox=455;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=0.722;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:29,18,0:47:99:455,0,842,542,896,1438:18,11,10,8 +chrX 1701066 . T . . END=1701093 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,106,1443 +chrX 1701094 . G T,GTT, 256.60 . AS_QUALapprox=|24|264|0;AS_VarDP=12|5|11|0;BaseQRankSum=0.855;DP=56;MQRankSum=-1.513;QUALapprox=264;RAW_GT_COUNT=0,1,0;RAW_MQandDP=195136,56;ReadPosRankSum=-1.672;VarDP=28 GT:AD:DP:GQ:PL:SB 0/2:12,5,11,0:28:99:264,240,1304,0,247,284,366,965,377,1019:5,7,8,8 +chrX 1701095 . T . . END=1701116 GT:DP:GQ:MIN_DP:PL 0/0:62:84:62:0,84,1260 +chrX 1701117 . G . . END=1701118 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,992 +chrX 1701119 . G . . END=1701381 GT:DP:GQ:MIN_DP:PL 0/0:59:53:59:0,53,1134 +chrX 1701382 . GC G, 1073.60 . AS_QUALapprox=|1081|0;AS_VarDP=29|34|0;BaseQRankSum=-1.145;DP=65;MQRankSum=0.000;QUALapprox=1081;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230884,65;ReadPosRankSum=-0.635;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:29,34,0:63:99:1081,0,894,1168,997,2165:19,10,17,17 +chrX 1701384 . C . . END=1701639 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,111,1800 +chrX 1701640 . A AGTGGCCTCTGCCAGGTGTCTCCAGTGTTGATGACTCAGCGGAG, 527.60 . AS_QUALapprox=|535|0;AS_VarDP=9|18|0;BaseQRankSum=1.809;DP=61;MQRankSum=-0.047;QUALapprox=535;RAW_GT_COUNT=0,1,0;RAW_MQandDP=211211,61;ReadPosRankSum=-2.039;VarDP=27 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:9,18,0:27:99:0|1:1701640_A_AGTGGCCTCTGCCAGGTGTCTCCAGTGTTGATGACTCAGCGGAG:535,0,301,568,354,921:1701640:3,6,10,8 +chrX 1701641 . G . . END=1701664 GT:DP:GQ:MIN_DP:PL 0/0:43:91:43:0,91,1239 +chrX 1701665 . C T, 298.64 . AS_QUALapprox=|306|0;AS_VarDP=28|10|0;BaseQRankSum=1.176;DP=42;MQRankSum=-0.964;QUALapprox=306;RAW_GT_COUNT=0,1,0;RAW_MQandDP=140811,42;ReadPosRankSum=3.832;VarDP=38 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:28,10,0:38:99:1|0:1701640_A_AGTGGCCTCTGCCAGGTGTCTCCAGTGTTGATGACTCAGCGGAG:306,0,934,389,964,1353:1701640:14,14,3,7 +chrX 1701666 . G . . END=1701678 GT:DP:GQ:MIN_DP:PL 0/0:38:90:38:0,90,1002 +chrX 1701679 . C CGGAGGTGGCCTCTGCCAGGTGTCTCCAGCATTGATG, 313.60 . AS_QUALapprox=|321|0;AS_VarDP=27|12|0;BaseQRankSum=1.270;DP=40;MQRankSum=-1.878;QUALapprox=321;RAW_GT_COUNT=0,1,0;RAW_MQandDP=135835,40;ReadPosRankSum=1.509;VarDP=39 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:27,12,0:39:99:1|0:1701640_A_AGTGGCCTCTGCCAGGTGTCTCCAGTGTTGATGACTCAGCGGAG:321,0,949,402,984,1386:1701640:13,14,3,9 +chrX 1701680 . A . . END=1701680 GT:DP:GQ:MIN_DP:PL 0/0:29:72:29:0,72,838 +chrX 1701681 . C CTCAGCGG, 315.60 . AS_QUALapprox=|323|0;AS_VarDP=26|12|0;BaseQRankSum=1.229;DP=42;MQRankSum=-1.827;QUALapprox=323;RAW_GT_COUNT=0,1,0;RAW_MQandDP=143035,42;ReadPosRankSum=-1.005;VarDP=38 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:26,12,0:38:99:1|0:1701640_A_AGTGGCCTCTGCCAGGTGTCTCCAGTGTTGATGACTCAGCGGAG:323,0,918,402,954,1356:1701640:13,13,3,9 +chrX 1701682 . A . . END=1701708 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 1701709 . A . . END=1701709 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,758 +chrX 1701710 . T . . END=1701722 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 1701723 . G . . END=1701724 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,873 +chrX 1701725 . A . . END=1701728 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,120,1800 +chrX 1701729 . A . . END=1701729 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,223 +chrX 1701730 . G . . END=1701765 GT:DP:GQ:MIN_DP:PL 0/0:42:41:42:0,41,1026 +chrX 1701766 . A . . END=1701766 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,756 +chrX 1701767 . G . . END=1701969 GT:DP:GQ:MIN_DP:PL 0/0:16:22:11:0,22,332 +chrX 1701970 . G . . END=1701983 GT:DP:GQ:MIN_DP:PL 0/0:9:15:9:0,15,188 +chrX 1701984 . G . . END=1701991 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,243 +chrX 1701992 . C . . END=1702000 GT:DP:GQ:MIN_DP:PL 0/0:8:7:8:0,7,184 +chrX 1702001 . G . . END=1702012 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,233 +chrX 1702013 . G . . END=1702021 GT:DP:GQ:MIN_DP:PL 0/0:8:15:8:0,15,225 +chrX 1702022 . G . . END=1702029 GT:DP:GQ:MIN_DP:PL 0/0:10:21:9:0,21,258 +chrX 1702030 . G . . END=1702030 GT:DP:GQ:MIN_DP:PL 0/0:10:0:10:0,0,0 +chrX 1702031 . G . . END=1702037 GT:DP:GQ:MIN_DP:PL 0/0:9:24:8:0,24,278 +chrX 1702038 . T . . END=1702038 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,0 +chrX 1702039 . C . . END=1702047 GT:DP:GQ:MIN_DP:PL 0/0:13:33:11:0,33,372 +chrX 1702048 . C . . END=1702048 GT:DP:GQ:MIN_DP:PL 0/0:14:17:14:0,17,387 +chrX 1702049 . C . . END=1702052 GT:DP:GQ:MIN_DP:PL 0/0:13:24:13:0,24,362 +chrX 1702053 . A . . END=1702053 GT:DP:GQ:MIN_DP:PL 0/0:15:10:15:0,10,411 +chrX 1702054 . T . . END=1702065 GT:DP:GQ:MIN_DP:PL 0/0:15:20:15:0,20,426 +chrX 1702066 . C . . END=1702066 GT:DP:GQ:MIN_DP:PL 0/0:13:0:13:0,0,0 +chrX 1702067 . G . . END=1702082 GT:DP:GQ:MIN_DP:PL 0/0:18:26:17:0,26,501 +chrX 1702083 . A . . END=1702083 GT:DP:GQ:MIN_DP:PL 0/0:19:0:19:0,0,481 +chrX 1702084 . G . . END=1702168 GT:DP:GQ:MIN_DP:PL 0/0:17:30:15:0,30,412 +chrX 1702169 . G C, 183.64 . AS_QUALapprox=|191|0;AS_VarDP=3|10|0;BaseQRankSum=0.092;DP=13;MQRankSum=-0.256;QUALapprox=191;RAW_GT_COUNT=0,1,0;RAW_MQandDP=24007,13;ReadPosRankSum=-1.525;VarDP=13 GT:AD:DP:GQ:PL:SB 0/1:3,10,0:13:42:191,0,42,199,70,270:1,2,6,4 +chrX 1702170 . G . . END=1702201 GT:DP:GQ:MIN_DP:PL 0/0:16:34:15:0,34,481 +chrX 1702202 . G . . END=1702202 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,268 +chrX 1702203 . G . . END=1702208 GT:DP:GQ:MIN_DP:PL 0/0:16:42:16:0,42,630 +chrX 1702209 . G . . END=1702209 GT:DP:GQ:MIN_DP:PL 0/0:13:4:13:0,4,362 +chrX 1702210 . C . . END=1702415 GT:DP:GQ:MIN_DP:PL 0/0:21:22:14:0,22,442 +chrX 1702416 . A . . END=1702416 GT:DP:GQ:MIN_DP:PL 0/0:22:0:22:0,0,495 +chrX 1702417 . G . . END=1702422 GT:DP:GQ:MIN_DP:PL 0/0:22:57:22:0,57,855 +chrX 1702423 . A . . END=1702423 GT:DP:GQ:MIN_DP:PL 0/0:21:0:21:0,0,444 +chrX 1702424 . C . . END=1702566 GT:DP:GQ:MIN_DP:PL 0/0:28:25:21:0,25,545 +chrX 1702567 . C . . END=1702568 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,723 +chrX 1702569 . T . . END=1702577 GT:DP:GQ:MIN_DP:PL 0/0:37:93:37:0,93,1395 +chrX 1702578 . T . . END=1702578 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,675 +chrX 1702579 . G . . END=1702683 GT:DP:GQ:MIN_DP:PL 0/0:37:26:30:0,26,774 +chrX 1702684 . G . . END=1702684 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,1075 +chrX 1702685 . G . . END=1702685 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,120,1800 +chrX 1702686 . G . . END=1702686 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,88 +chrX 1702687 . T . . END=1702696 GT:DP:GQ:MIN_DP:PL 0/0:46:92:46:0,92,1435 +chrX 1702697 . A . . END=1702697 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,1076 +chrX 1702698 . T . . END=1702709 GT:DP:GQ:MIN_DP:PL 0/0:44:71:44:0,71,1271 +chrX 1702710 . C . . END=1702710 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,0 +chrX 1702711 . G . . END=1702730 GT:DP:GQ:MIN_DP:PL 0/0:41:78:41:0,78,1177 +chrX 1702731 . G . . END=1702731 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,56 +chrX 1702732 . T . . END=1703718 GT:DP:GQ:MIN_DP:PL 0/0:54:23:44:0,23,1161 +chrX 1703719 . T A, 582.64 . AS_QUALapprox=|590|0;AS_VarDP=30|24|0;BaseQRankSum=-1.728;DP=57;MQRankSum=-2.620;QUALapprox=590;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194687,57;ReadPosRankSum=2.360;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:30,24,0:54:99:590,0,840,680,913,1592:16,14,9,15 +chrX 1703720 . A . . END=1703758 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,118,1636 +chrX 1703759 . T TTA, 1194.60 . AS_QUALapprox=|1202|0;AS_VarDP=31|31|0;BaseQRankSum=0.066;DP=63;MQRankSum=-2.033;QUALapprox=1202;RAW_GT_COUNT=0,1,0;RAW_MQandDP=221506,63;ReadPosRankSum=-0.070;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:31,31,0:62:99:1202,0,1133,1295,1226,2521:14,17,13,18 +chrX 1703760 . A . . END=1703856 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,102,1245 +chrX 1703857 . C A, 306.64 . AS_QUALapprox=|314|0;AS_VarDP=25|13|0;BaseQRankSum=1.592;DP=39;MQRankSum=-0.052;QUALapprox=314;RAW_GT_COUNT=0,1,0;RAW_MQandDP=107794,39;ReadPosRankSum=-0.262;VarDP=38 GT:AD:DP:GQ:PL:SB 0/1:25,13,0:38:99:314,0,630,388,669,1057:10,15,9,4 +chrX 1703858 . G . . END=1704217 GT:DP:GQ:MIN_DP:PL 0/0:33:34:23:0,34,541 +chrX 1704218 . G A, 434.64 . AS_QUALapprox=|442|0;AS_VarDP=23|18|0;BaseQRankSum=-0.103;DP=42;MQRankSum=-3.463;QUALapprox=442;RAW_GT_COUNT=0,1,0;RAW_MQandDP=69309,42;ReadPosRankSum=-0.999;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:23,18,0:41:99:442,0,616,511,670,1182:13,10,8,10 +chrX 1704219 . C . . END=1704407 GT:DP:GQ:MIN_DP:PL 0/0:49:70:49:0,70,1371 +chrX 1704408 . A C, 644.64 . AS_QUALapprox=|652|0;AS_VarDP=24|25|0;BaseQRankSum=0.094;DP=51;MQRankSum=-3.109;QUALapprox=652;RAW_GT_COUNT=0,1,0;RAW_MQandDP=101391,51;ReadPosRankSum=1.551;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:24,25,0:49:99:652,0,623,724,699,1422:13,11,12,13 +chrX 1704409 . T . . END=1705246 GT:DP:GQ:MIN_DP:PL 0/0:42:33:37:0,33,853 +chrX 1705247 . T G, 298.64 . AS_QUALapprox=|306|0;AS_VarDP=24|9|0;BaseQRankSum=1.136;DP=34;MQRankSum=-2.630;QUALapprox=306;RAW_GT_COUNT=0,1,0;RAW_MQandDP=66382,34;ReadPosRankSum=-1.194;VarDP=33 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,9,0:33:99:0|1:1705247_T_G:306,0,970,378,997,1375:1705247:14,10,5,4 +chrX 1705248 . A . . END=1705250 GT:DP:GQ:MIN_DP:PL 0/0:32:93:32:0,93,1038 +chrX 1705251 . C T, 292.64 . AS_QUALapprox=|300|0;AS_VarDP=26|9|0;BaseQRankSum=-1.297;DP=36;MQRankSum=-2.794;QUALapprox=300;RAW_GT_COUNT=0,1,0;RAW_MQandDP=72944,36;ReadPosRankSum=-0.606;VarDP=35 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,9,0:35:99:0|1:1705247_T_G:300,0,1033,378,1060,1438:1705247:16,10,5,4 +chrX 1705252 . G . . END=1705583 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,102,1126 +chrX 1705584 . C G, 903.64 . AS_QUALapprox=|911|0;AS_VarDP=32|34|0;BaseQRankSum=3.125;DP=67;MQRankSum=-4.372;QUALapprox=911;RAW_GT_COUNT=0,1,0;RAW_MQandDP=150825,67;ReadPosRankSum=0.911;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:32,34,0:66:99:911,0,794,1008,896,1904:19,13,22,12 +chrX 1705585 . G . . END=1706087 GT:DP:GQ:MIN_DP:PL 0/0:35:39:16:0,39,466 +chrX 1706088 . G A, 140.64 . AS_QUALapprox=|148|0;AS_VarDP=19|7|0;BaseQRankSum=1.868;DP=27;MQRankSum=-2.582;QUALapprox=148;RAW_GT_COUNT=0,1,0;RAW_MQandDP=46936,27;ReadPosRankSum=2.401;VarDP=26 GT:AD:DP:GQ:PL:SB 0/1:19,7,0:26:99:148,0,496,204,517,721:10,9,3,4 +chrX 1706089 . T . . END=1706451 GT:DP:GQ:MIN_DP:PL 0/0:19:32:19:0,32,556 +chrX 1706452 . T G, 926.64 . AS_QUALapprox=|934|0;AS_VarDP=21|24|0;BaseQRankSum=-0.614;DP=46;MQRankSum=-2.952;QUALapprox=934;RAW_GT_COUNT=0,1,0;RAW_MQandDP=109288,46;ReadPosRankSum=-0.413;VarDP=45 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,24,0:45:99:0|1:1706452_T_G:934,0,798,997,871,1867:1706452:13,8,12,12 +chrX 1706453 . C T, 926.64 . AS_QUALapprox=|934|0;AS_VarDP=21|24|0;BaseQRankSum=-0.260;DP=47;MQRankSum=-2.952;QUALapprox=934;RAW_GT_COUNT=0,1,0;RAW_MQandDP=111137,47;ReadPosRankSum=-0.129;VarDP=45 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,24,0:45:99:0|1:1706452_T_G:934,0,798,997,871,1867:1706452:13,8,12,12 +chrX 1706454 . C . . END=1706605 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,99,1355 +chrX 1706606 . A G, 671.64 . AS_QUALapprox=|679|0;AS_VarDP=22|26|0;BaseQRankSum=-0.855;DP=52;MQRankSum=-3.906;QUALapprox=679;RAW_GT_COUNT=0,1,0;RAW_MQandDP=141110,52;ReadPosRankSum=-1.284;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:22,26,0:48:99:679,0,590,745,668,1413:5,17,15,11 +chrX 1706607 . G . . END=1706688 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,106,1489 +chrX 1706689 . A C, 1645.06 . AS_QUALapprox=|1659|0;AS_VarDP=0|54|0;DP=56;QUALapprox=1659;RAW_GT_COUNT=0,0,1;RAW_MQandDP=143482,56;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:1659,161,0,1659,161,1659:0,0,31,23 +chrX 1706690 . G . . END=1707109 GT:DP:GQ:MIN_DP:PL 0/0:42:70:42:0,70,1057 +chrX 1707110 . G GT, 130.60 . AS_QUALapprox=|138|0;AS_VarDP=27|7|0;BaseQRankSum=0.836;DP=36;MQRankSum=-3.146;QUALapprox=138;RAW_GT_COUNT=0,1,0;RAW_MQandDP=74414,36;ReadPosRankSum=-0.043;VarDP=34 GT:AD:DP:GQ:PL:SB 0/1:27,7,0:34:99:138,0,862,220,883,1102:13,14,3,4 +chrX 1707111 . T . . END=1707393 GT:DP:GQ:MIN_DP:PL 0/0:44:42:44:0,42,1027 +chrX 1707394 . T C, 484.64 . AS_QUALapprox=|492|0;AS_VarDP=25|20|0;BaseQRankSum=-0.381;DP=45;MQRankSum=-1.017;QUALapprox=492;RAW_GT_COUNT=0,1,0;RAW_MQandDP=100593,45;ReadPosRankSum=-0.903;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:25,20,0:45:99:492,0,683,567,743,1310:14,11,10,10 +chrX 1707395 . G . . END=1707776 GT:DP:GQ:MIN_DP:PL 0/0:44:64:44:0,64,1115 +chrX 1707777 . A G, 491.64 . AS_QUALapprox=|499|0;AS_VarDP=24|20|0;BaseQRankSum=-0.213;DP=46;MQRankSum=-4.735;QUALapprox=499;RAW_GT_COUNT=0,1,0;RAW_MQandDP=92770,46;ReadPosRankSum=0.507;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:24,20,0:44:99:499,0,682,571,742,1313:13,11,14,6 +chrX 1707778 . T . . END=1708124 GT:DP:GQ:MIN_DP:PL 0/0:49:97:49:0,97,1349 +chrX 1708125 . C T, 840.64 . AS_QUALapprox=|848|0;AS_VarDP=20|33|0;BaseQRankSum=-1.110;DP=54;MQRankSum=0.381;QUALapprox=848;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169262,54;ReadPosRankSum=0.762;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:20,33,0:53:99:848,0,497,908,595,1503:9,11,16,17 +chrX 1708126 . G . . END=1708174 GT:DP:GQ:MIN_DP:PL 0/0:50:95:50:0,95,1449 +chrX 1708175 . C G, 681.64 . AS_QUALapprox=|689|0;AS_VarDP=21|24|0;BaseQRankSum=0.616;DP=46;MQRankSum=1.817;QUALapprox=689;RAW_GT_COUNT=0,1,0;RAW_MQandDP=123247,46;ReadPosRankSum=2.185;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:21,24,0:45:99:689,0,553,753,625,1378:7,14,9,15 +chrX 1708176 . T . . END=1708414 GT:DP:GQ:MIN_DP:PL 0/0:34:54:34:0,54,882 +chrX 1708415 . G T, 328.64 . AS_QUALapprox=|336|0;AS_VarDP=13|13|0;BaseQRankSum=0.555;DP=26;MQRankSum=0.494;QUALapprox=336;RAW_GT_COUNT=0,1,0;RAW_MQandDP=42253,26;ReadPosRankSum=-2.437;VarDP=26 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:13,13,0:26:99:0|1:1708415_G_T:336,0,364,376,403,779:1708415:3,10,5,8 +chrX 1708416 . A . . END=1708813 GT:DP:GQ:MIN_DP:PL 0/0:25:21:24:0,21,661 +chrX 1708814 . A G, 486.64 . AS_QUALapprox=|494|0;AS_VarDP=36|21|0;BaseQRankSum=0.011;DP=57;MQRankSum=-2.805;QUALapprox=494;RAW_GT_COUNT=0,1,0;RAW_MQandDP=168170,57;ReadPosRankSum=1.010;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:36,21,0:57:99:494,0,965,602,1028,1630:17,19,11,10 +chrX 1708815 . T . . END=1709011 GT:DP:GQ:MIN_DP:PL 0/0:45:90:45:0,90,1232 +chrX 1709012 . G A, 1680.06 . AS_QUALapprox=|1694|0;AS_VarDP=0|39|0;DP=40;QUALapprox=1694;RAW_GT_COUNT=0,0,1;RAW_MQandDP=51249,40;VarDP=39 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,39,0:39:99:0|1:1709012_G_A:1694,117,0,1694,117,1694:1709012:0,0,19,20 +chrX 1709013 . T . . END=1709017 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1440 +chrX 1709018 . G T, 1621.06 . AS_QUALapprox=|1635|0;AS_VarDP=0|37|0;DP=38;QUALapprox=1635;RAW_GT_COUNT=0,0,1;RAW_MQandDP=46933,38;VarDP=37 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,37,0:37:99:0|1:1709012_G_A:1635,111,0,1635,111,1635:1709012:0,0,18,19 +chrX 1709019 . G . . END=1709117 GT:DP:GQ:MIN_DP:PL 0/0:41:90:41:0,90,1116 +chrX 1709118 . G C, 342.64 . AS_QUALapprox=|350|0;AS_VarDP=21|15|0;BaseQRankSum=0.614;DP=37;MQRankSum=-0.988;QUALapprox=350;RAW_GT_COUNT=0,1,0;RAW_MQandDP=45836,37;ReadPosRankSum=2.248;VarDP=36 GT:AD:DP:GQ:PL:SB 0/1:21,15,0:36:99:350,0,518,412,562,975:10,11,7,8 +chrX 1709119 . T . . END=1709533 GT:DP:GQ:MIN_DP:PL 0/0:56:94:56:0,94,1236 +chrX 1709534 . C T, 1027.64 . AS_QUALapprox=|1035|0;AS_VarDP=28|37|0;BaseQRankSum=0.012;DP=66;MQRankSum=-0.839;QUALapprox=1035;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237136,66;ReadPosRankSum=0.239;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:28,37,0:65:99:1035,0,734,1119,844,1963:14,14,11,26 +chrX 1709535 . G . . END=1709601 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1709602 . G A, 1677.64 . AS_QUALapprox=|1685|0;AS_VarDP=22|42|0;BaseQRankSum=-1.179;DP=65;MQRankSum=-0.691;QUALapprox=1685;RAW_GT_COUNT=0,1,0;RAW_MQandDP=233536,65;ReadPosRankSum=-1.377;VarDP=64 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,42,0:64:99:0|1:1709602_G_A:1685,0,786,1751,913,2664:1709602:10,12,15,27 +chrX 1709603 . T . . END=1709608 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1709609 . G C, 1674.64 . AS_QUALapprox=|1682|0;AS_VarDP=23|42|0;BaseQRankSum=-1.242;DP=65;MQRankSum=-0.708;QUALapprox=1682;RAW_GT_COUNT=0,1,0;RAW_MQandDP=233536,65;ReadPosRankSum=-1.697;VarDP=65 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,42,0:65:99:0|1:1709602_G_A:1682,0,818,1751,945,2696:1709602:11,12,15,27 +chrX 1709610 . C . . END=1709633 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 1709634 . C T, 501.64 . AS_QUALapprox=|509|0;AS_VarDP=32|20|0;BaseQRankSum=0.401;DP=56;MQRankSum=0.000;QUALapprox=509;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=0.988;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:32,20,0:52:99:509,0,880,605,940,1545:12,20,10,10 +chrX 1709635 . G . . END=1709892 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,118,1743 +chrX 1709893 . T G, 617.64 . AS_QUALapprox=|625|0;AS_VarDP=24|24|0;BaseQRankSum=-1.229;DP=51;MQRankSum=0.000;QUALapprox=625;RAW_GT_COUNT=0,1,0;RAW_MQandDP=181521,51;ReadPosRankSum=-0.248;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:24,24,0:48:99:625,0,670,697,742,1439:11,13,13,11 +chrX 1709894 . G . . END=1710230 GT:DP:GQ:MIN_DP:PL 0/0:60:83:60:0,83,1144 +chrX 1710231 . G A, 916.64 . AS_QUALapprox=|924|0;AS_VarDP=27|34|0;BaseQRankSum=0.109;DP=63;MQRankSum=0.000;QUALapprox=924;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=-0.704;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:27,34,0:61:99:924,0,691,1004,793,1797:13,14,18,16 +chrX 1710232 . T . . END=1710314 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1710315 . T C, 718.64 . AS_QUALapprox=|726|0;AS_VarDP=29|30|0;BaseQRankSum=-2.060;DP=61;MQRankSum=0.000;QUALapprox=726;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=1.350;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:29,30,0:59:99:726,0,791,813,880,1693:15,14,14,16 +chrX 1710316 . G . . END=1710615 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 1710616 . GATAA G, 1149.60 . AS_QUALapprox=|1157|0;AS_VarDP=26|30|0;BaseQRankSum=-1.127;DP=59;MQRankSum=0.000;QUALapprox=1157;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=0.566;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:26,30,0:56:99:1157,0,968,1236,1058,2294:12,14,15,15 +chrX 1710621 . A . . END=1711233 GT:DP:GQ:MIN_DP:PL 0/0:65:93:65:0,93,1647 +chrX 1711234 . CT C, 72.60 . AS_QUALapprox=|80|0;AS_VarDP=20|8|0;BaseQRankSum=-0.711;DP=57;MQRankSum=-1.639;QUALapprox=80;RAW_GT_COUNT=0,1,0;RAW_MQandDP=191803,57;ReadPosRankSum=-0.521;VarDP=28 GT:AD:DP:GQ:PL:SB 0/1:20,8,0:28:80:80,0,294,138,318,456:11,9,3,5 +chrX 1711236 . T . . END=1711255 GT:DP:GQ:MIN_DP:PL 0/0:65:96:65:0,96,1440 +chrX 1711256 . G . . END=1711256 GT:DP:GQ:MIN_DP:PL 0/0:45:16:45:0,16,1266 +chrX 1711257 . G . . END=1711527 GT:DP:GQ:MIN_DP:PL 0/0:53:80:53:0,80,1186 +chrX 1711528 . G A, 743.64 . AS_QUALapprox=|751|0;AS_VarDP=27|29|0;BaseQRankSum=1.547;DP=58;MQRankSum=0.000;QUALapprox=751;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-0.049;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:27,29,0:56:99:751,0,596,830,683,1513:14,13,12,17 +chrX 1711529 . C . . END=1711682 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,109,1468 +chrX 1711683 . CTT C, 234.60 . AS_QUALapprox=|242|0;AS_VarDP=23|11|0;BaseQRankSum=-2.068;DP=50;MQRankSum=1.038;QUALapprox=242;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172721,50;ReadPosRankSum=0.153;VarDP=34 GT:AD:DP:GQ:PL:SB 0/1:23,11,0:34:99:242,0,545,311,578,890:15,8,2,9 +chrX 1711686 . T . . END=1712007 GT:DP:GQ:MIN_DP:PL 0/0:44:28:39:0,28,1019 +chrX 1712008 . T TTC, 368.60 . AS_QUALapprox=|376|0;AS_VarDP=13|13|0;BaseQRankSum=-1.347;DP=37;MQRankSum=0.000;QUALapprox=376;RAW_GT_COUNT=0,1,0;RAW_MQandDP=133200,37;ReadPosRankSum=0.410;VarDP=26 GT:AD:DP:GQ:PL:SB 0/1:13,13,0:26:99:376,0,386,415,425,840:0,13,1,12 +chrX 1712009 . T . . END=1712028 GT:DP:GQ:MIN_DP:PL 0/0:36:67:36:0,67,1072 +chrX 1712029 . C . . END=1712029 GT:DP:GQ:MIN_DP:PL 0/0:39:13:39:0,13,1097 +chrX 1712030 . T . . END=1712102 GT:DP:GQ:MIN_DP:PL 0/0:43:59:41:0,59,1052 +chrX 1712103 . CTCT C, 743.60 . AS_QUALapprox=|751|0;AS_VarDP=22|21|0;BaseQRankSum=-0.171;DP=47;MQRankSum=0.000;QUALapprox=751;RAW_GT_COUNT=0,1,0;RAW_MQandDP=166561,47;ReadPosRankSum=-1.058;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:22,21,0:43:99:751,0,861,817,924,1741:10,12,13,8 +chrX 1712107 . T . . END=1712217 GT:DP:GQ:MIN_DP:PL 0/0:47:52:47:0,52,1220 +chrX 1712218 . A . . END=1712218 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,952 +chrX 1712219 . C . . END=1712273 GT:DP:GQ:MIN_DP:PL 0/0:43:34:41:0,34,1036 +chrX 1712274 . ATTTTTTT A, 251.60 . AS_QUALapprox=|259|0;AS_VarDP=12|7|0;BaseQRankSum=-1.000;DP=41;MQRankSum=1.465;QUALapprox=259;RAW_GT_COUNT=0,1,0;RAW_MQandDP=136520,41;ReadPosRankSum=0.390;VarDP=19 GT:AD:DP:GQ:PL:SB 0/1:12,7,0:19:99:259,0,433,295,455,750:5,7,1,6 +chrX 1712282 . T . . END=1712306 GT:DP:GQ:MIN_DP:PL 0/0:32:37:32:0,37,675 +chrX 1712307 . G . . END=1712307 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,779 +chrX 1712308 . T . . END=1712308 GT:DP:GQ:MIN_DP:PL 0/0:31:78:31:0,78,1170 +chrX 1712309 . A . . END=1712309 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,849 +chrX 1712310 . G . . END=1712579 GT:DP:GQ:MIN_DP:PL 0/0:35:33:33:0,33,898 +chrX 1712580 . T . . END=1712580 GT:DP:GQ:MIN_DP:PL 0/0:54:0:54:0,0,1329 +chrX 1712581 . C CTTCT, 2172.03 . AS_QUALapprox=|2186|0;AS_VarDP=0|49|0;DP=54;QUALapprox=2186;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:2186,147,0,2186,147,2186:0,0,25,24 +chrX 1712582 . T . . END=1712609 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,119,1478 +chrX 1712610 . TTC T, 983.60 . AS_QUALapprox=|991|0;AS_VarDP=22|27|0;BaseQRankSum=0.330;DP=55;MQRankSum=0.000;QUALapprox=991;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-0.825;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:22,27,0:49:99:991,0,766,1057,847,1904:11,11,14,13 +chrX 1712613 . T . . END=1712698 GT:DP:GQ:MIN_DP:PL 0/0:58:62:58:0,62,1464 +chrX 1712699 . A . . END=1712699 GT:DP:GQ:MIN_DP:PL 0/0:58:17:58:0,17,1350 +chrX 1712700 . T . . END=1713007 GT:DP:GQ:MIN_DP:PL 0/0:46:32:45:0,32,965 +chrX 1713008 . A G, 501.64 . AS_QUALapprox=|509|0;AS_VarDP=31|21|0;BaseQRankSum=0.124;DP=54;MQRankSum=0.000;QUALapprox=509;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=0.168;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:31,21,0:52:99:509,0,826,602,888,1490:16,15,6,15 +chrX 1713009 . T . . END=1713080 GT:DP:GQ:MIN_DP:PL 0/0:53:88:53:0,88,1534 +chrX 1713081 . A C, 726.64 . AS_QUALapprox=|734|0;AS_VarDP=22|26|0;BaseQRankSum=0.110;DP=50;MQRankSum=0.000;QUALapprox=734;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=-0.555;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:22,26,0:48:99:734,0,601,800,679,1479:11,11,16,10 +chrX 1713082 . A . . END=1713110 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1713111 . T C, 847.64 . AS_QUALapprox=|855|0;AS_VarDP=28|32|0;BaseQRankSum=-0.132;DP=61;MQRankSum=0.000;QUALapprox=855;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=0.712;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:28,32,0:60:99:855,0,743,940,839,1778:18,10,20,12 +chrX 1713112 . G . . END=1713895 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1713896 . G A, 810.64 . AS_QUALapprox=|818|0;AS_VarDP=34|31|0;BaseQRankSum=0.727;DP=67;MQRankSum=0.000;QUALapprox=818;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=-0.158;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:34,31,0:65:99:818,0,892,920,985,1904:18,16,20,11 +chrX 1713897 . C . . END=1714142 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 1714143 . A G, 1074.64 . AS_QUALapprox=|1082|0;AS_VarDP=34|30|0;BaseQRankSum=-0.809;DP=65;MQRankSum=0.000;QUALapprox=1082;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=-1.349;VarDP=64 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:34,30,0:64:99:0|1:1714143_A_G:1082,0,1316,1184,1407,2591:1714143:17,17,13,17 +chrX 1714144 . G . . END=1714152 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1714153 . G A, 1055.64 . AS_QUALapprox=|1063|0;AS_VarDP=34|28|0;BaseQRankSum=0.879;DP=62;MQRankSum=0.000;QUALapprox=1063;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=-1.417;VarDP=62 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:34,28,0:62:99:0|1:1714143_A_G:1063,0,1343,1165,1428,2593:1714143:16,18,12,16 +chrX 1714154 . T . . END=1714156 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1714157 . A G, 1055.64 . AS_QUALapprox=|1063|0;AS_VarDP=34|28|0;BaseQRankSum=0.904;DP=62;MQRankSum=0.000;QUALapprox=1063;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=-1.861;VarDP=62 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:34,28,0:62:99:0|1:1714143_A_G:1063,0,1343,1165,1428,2593:1714143:16,18,12,16 +chrX 1714158 . T . . END=1714244 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 1714245 . G T, 730.64 . AS_QUALapprox=|738|0;AS_VarDP=37|28|0;BaseQRankSum=1.004;DP=68;MQRankSum=0.000;QUALapprox=738;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=1.623;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:37,28,0:65:99:738,0,1000,849,1084,1933:20,17,13,15 +chrX 1714246 . C . . END=1714539 GT:DP:GQ:MIN_DP:PL 0/0:76:99:76:0,120,1800 +chrX 1714540 . C G, 745.64 . AS_QUALapprox=|753|0;AS_VarDP=38|30|0;BaseQRankSum=-0.283;DP=70;MQRankSum=-1.096;QUALapprox=753;RAW_GT_COUNT=0,1,0;RAW_MQandDP=250900,70;ReadPosRankSum=0.525;VarDP=68 GT:AD:DP:GQ:PL:SB 0/1:38,30,0:68:99:753,0,1037,867,1127,1993:25,13,16,14 +chrX 1714541 . A . . END=1714583 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1714584 . T C, 803.64 . AS_QUALapprox=|811|0;AS_VarDP=23|29|0;BaseQRankSum=-1.816;DP=56;MQRankSum=1.631;QUALapprox=811;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198500,56;ReadPosRankSum=2.387;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:23,29,0:52:99:811,0,642,880,729,1609:13,10,18,11 +chrX 1714585 . G . . END=1714698 GT:DP:GQ:MIN_DP:PL 0/0:75:99:75:0,120,1800 +chrX 1714699 . T C, 733.64 . AS_QUALapprox=|741|0;AS_VarDP=36|31|0;BaseQRankSum=-2.050;DP=70;MQRankSum=1.344;QUALapprox=741;RAW_GT_COUNT=0,1,0;RAW_MQandDP=250634,70;ReadPosRankSum=2.070;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:36,31,0:67:99:741,0,990,849,1083,1932:15,21,6,25 +chrX 1714700 . G . . END=1714751 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 1714752 . G A, 881.64 . AS_QUALapprox=|889|0;AS_VarDP=26|32|0;BaseQRankSum=1.977;DP=58;MQRankSum=1.144;QUALapprox=889;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208225,58;ReadPosRankSum=-1.768;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:26,32,0:58:99:889,0,660,967,755,1722:5,21,9,23 +chrX 1714753 . T . . END=1715090 GT:DP:GQ:MIN_DP:PL 0/0:63:91:63:0,91,1539 +chrX 1715091 . C A, 1003.64 . AS_QUALapprox=|1011|0;AS_VarDP=27|35|0;BaseQRankSum=1.604;DP=67;MQRankSum=1.171;QUALapprox=1011;RAW_GT_COUNT=0,1,0;RAW_MQandDP=240625,67;ReadPosRankSum=1.051;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:27,35,0:62:99:1011,0,687,1091,792,1884:9,18,17,18 +chrX 1715092 . T . . END=1715349 GT:DP:GQ:MIN_DP:PL 0/0:64:75:64:0,75,1438 +chrX 1715350 . C T, 526.64 . AS_QUALapprox=|534|0;AS_VarDP=30|20|0;BaseQRankSum=1.499;DP=51;MQRankSum=-1.184;QUALapprox=534;RAW_GT_COUNT=0,1,0;RAW_MQandDP=181600,51;ReadPosRankSum=-2.516;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:30,20,0:50:99:534,0,831,624,891,1516:11,19,6,14 +chrX 1715351 . A . . END=1715388 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,111,1490 +chrX 1715389 . T C, 1591.06 . AS_QUALapprox=|1605|0;AS_VarDP=0|53|0;DP=53;QUALapprox=1605;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1605,158,0,1605,158,1605:0,0,20,33 +chrX 1715390 . G . . END=1715516 GT:DP:GQ:MIN_DP:PL 0/0:55:47:55:0,47,1221 +chrX 1715517 . G . . END=1715521 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,669 +chrX 1715522 . C CAAAA, 1331.03 . AS_QUALapprox=|1345|0;AS_VarDP=0|32|0;DP=50;QUALapprox=1345;RAW_GT_COUNT=0,0,1;RAW_MQandDP=155735,50;VarDP=32 GT:AD:DP:GQ:PL:SB 1/1:0,32,0:32:96:1345,96,0,1346,96,1346:0,0,20,12 +chrX 1715523 . A . . END=1715549 GT:DP:GQ:MIN_DP:PL 0/0:58:81:58:0,81,1215 +chrX 1715550 . G . . END=1715551 GT:DP:GQ:MIN_DP:PL 0/0:55:0:55:0,0,773 +chrX 1715552 . A . . END=1715552 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,108,1620 +chrX 1715553 . T . . END=1715554 GT:DP:GQ:MIN_DP:PL 0/0:50:0:50:0,0,800 +chrX 1715555 . A . . END=1715733 GT:DP:GQ:MIN_DP:PL 0/0:47:69:47:0,69,1121 +chrX 1715734 . A G, 875.64 . AS_QUALapprox=|883|0;AS_VarDP=21|24|0;BaseQRankSum=-1.232;DP=47;MQRankSum=1.114;QUALapprox=883;RAW_GT_COUNT=0,1,0;RAW_MQandDP=167364,47;ReadPosRankSum=0.717;VarDP=45 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,24,0:45:99:0|1:1715734_A_G:883,0,757,946,829,1775:1715734:7,14,10,14 +chrX 1715735 . C . . END=1715755 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,120,1800 +chrX 1715756 . A G, 872.64 . AS_QUALapprox=|880|0;AS_VarDP=22|24|0;BaseQRankSum=-0.463;DP=46;MQRankSum=0.000;QUALapprox=880;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=0.671;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,24,0:46:99:0|1:1715734_A_G:880,0,779,946,852,1798:1715734:8,14,8,16 +chrX 1715757 . A . . END=1716680 GT:DP:GQ:MIN_DP:PL 0/0:53:37:52:0,37,1072 +chrX 1716681 . A ATCTG, 2170.03 . AS_QUALapprox=|2184|0;AS_VarDP=0|49|0;DP=53;QUALapprox=2184;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:2184,147,0,2184,147,2185:0,0,22,27 +chrX 1716682 . T . . END=1716824 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,100,1447 +chrX 1716825 . A G, 620.64 . AS_QUALapprox=|628|0;AS_VarDP=31|24|0;BaseQRankSum=-0.796;DP=56;MQRankSum=0.000;QUALapprox=628;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-0.815;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:31,24,0:55:99:628,0,862,721,934,1655:16,15,16,8 +chrX 1716826 . T . . END=1717352 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,110,1593 +chrX 1717353 . T G, 2381.06 . AS_QUALapprox=|2395|0;AS_VarDP=0|75|0;DP=76;QUALapprox=2395;RAW_GT_COUNT=0,0,1;RAW_MQandDP=273600,76;VarDP=75 GT:AD:DP:GQ:PL:SB 1/1:0,75,0:75:99:2395,224,0,2395,224,2395:0,0,39,36 +chrX 1717354 . G . . END=1717904 GT:DP:GQ:MIN_DP:PL 0/0:75:99:75:0,120,1800 +chrX 1717905 . C CT, 353.60 . AS_QUALapprox=|361|0;AS_VarDP=18|21|0;BaseQRankSum=-0.148;DP=60;MQRankSum=-1.290;QUALapprox=361;RAW_GT_COUNT=0,1,0;RAW_MQandDP=213669,60;ReadPosRankSum=0.324;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:18,21,0:39:99:361,0,331,414,393,808:7,11,13,8 +chrX 1717906 . T . . END=1717919 GT:DP:GQ:MIN_DP:PL 0/0:56:87:56:0,87,1305 +chrX 1717920 . G . . END=1717920 GT:DP:GQ:MIN_DP:PL 0/0:39:19:39:0,19,1078 +chrX 1717921 . A . . END=1717929 GT:DP:GQ:MIN_DP:PL 0/0:44:91:44:0,91,1279 +chrX 1717930 . A C, 1540.06 . AS_QUALapprox=|1554|0;AS_VarDP=0|45|0;DP=45;QUALapprox=1554;RAW_GT_COUNT=0,0,1;RAW_MQandDP=159901,45;VarDP=45 GT:AD:DP:GQ:PL:SB 1/1:0,45,0:45:99:1554,134,0,1554,134,1554:0,0,21,24 +chrX 1717931 . T . . END=1718001 GT:DP:GQ:MIN_DP:PL 0/0:44:94:44:0,94,1275 +chrX 1718002 . G A, 954.64 . AS_QUALapprox=|962|0;AS_VarDP=19|36|0;BaseQRankSum=-1.995;DP=56;MQRankSum=0.493;QUALapprox=962;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162883,56;ReadPosRankSum=0.638;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:19,36,0:55:99:962,0,465,1018,573,1591:10,9,16,20 +chrX 1718003 . C . . END=1718053 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 1718054 . T C, 2106.06 . AS_QUALapprox=|2120|0;AS_VarDP=0|58|0;DP=58;QUALapprox=2120;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169379,58;VarDP=58 GT:AD:DP:GQ:PL:SB 1/1:0,58,0:58:99:2120,174,0,2120,174,2120:0,0,26,32 +chrX 1718055 . C . . END=1718056 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 1718057 . C G, 579.64 . AS_QUALapprox=|587|0;AS_VarDP=34|25|0;BaseQRankSum=0.018;DP=61;MQRankSum=0.663;QUALapprox=587;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180179,61;ReadPosRankSum=-0.906;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:34,25,0:59:99:587,0,854,688,929,1617:13,21,14,11 +chrX 1718058 . G . . END=1718325 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 1718326 . T C, 1826.06 . AS_QUALapprox=|1840|0;AS_VarDP=1|61|0;BaseQRankSum=2.021;DP=65;MQRankSum=0.000;QUALapprox=1840;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;ReadPosRankSum=0.028;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:1,61,0:62:99:1840,175,0,1842,181,1849:0,1,35,26 +chrX 1718327 . G . . END=1718375 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 1718376 . CATTG C, 2147.03 . AS_QUALapprox=|2161|0;AS_VarDP=0|48|0;DP=61;QUALapprox=2161;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=48 GT:AD:DP:GQ:PL:SB 1/1:0,48,0:48:99:2161,145,0,2161,145,2161:0,0,26,22 +chrX 1718381 . A . . END=1718762 GT:DP:GQ:MIN_DP:PL 0/0:51:84:51:0,84,1230 +chrX 1718763 . G GTA, 725.60 . AS_QUALapprox=|733|0;AS_VarDP=14|23|0;BaseQRankSum=-0.686;DP=48;MQRankSum=0.000;QUALapprox=733;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=0.611;VarDP=37 GT:AD:DP:GQ:PL:SB 0/1:14,23,0:37:99:733,0,408,776,478,1253:10,4,9,14 +chrX 1718764 . T . . END=1719222 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,101,1330 +chrX 1719223 . C G, 1892.06 . AS_QUALapprox=|1906|0;AS_VarDP=0|57|0;DP=64;QUALapprox=1906;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1906,171,0,1906,171,1906:0,0,23,34 +chrX 1719224 . T . . END=1719463 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,117,1451 +chrX 1719464 . G A, 632.64 . AS_QUALapprox=|640|0;AS_VarDP=27|24|0;BaseQRankSum=0.437;DP=53;MQRankSum=0.000;QUALapprox=640;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=1.161;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:27,24,0:51:99:640,0,711,722,783,1505:11,16,10,14 +chrX 1719465 . G . . END=1719863 GT:DP:GQ:MIN_DP:PL 0/0:41:64:41:0,64,948 +chrX 1719864 . T TCCTTCTTTC,TCCTTCCTTCTTTC, 700.60 . AS_QUALapprox=|224|708|0;AS_VarDP=10|0|14|0;BaseQRankSum=1.562;DP=45;MQRankSum=-1.759;QUALapprox=708;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154589,45;ReadPosRankSum=-1.611;VarDP=24 GT:AD:DP:GQ:PL:SB 0/2:10,0,14,0:24:99:708,484,1218,0,439,370,706,1093,457,1261:4,6,7,7 +chrX 1719865 . C . . END=1719890 GT:DP:GQ:MIN_DP:PL 0/0:43:35:43:0,35,1216 +chrX 1719891 . T . . END=1719891 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,952 +chrX 1719892 . T . . END=1719982 GT:DP:GQ:MIN_DP:PL 0/0:28:34:28:0,34,749 +chrX 1719983 . T A, 272.64 . AS_QUALapprox=|280|0;AS_VarDP=15|11|0;BaseQRankSum=1.305;DP=28;MQRankSum=-1.090;QUALapprox=280;RAW_GT_COUNT=0,1,0;RAW_MQandDP=98356,28;ReadPosRankSum=-0.286;VarDP=26 GT:AD:DP:GQ:PL:SB 0/1:15,11,0:26:99:280,0,398,325,430,755:3,12,4,7 +chrX 1719984 . T . . END=1720037 GT:DP:GQ:MIN_DP:PL 0/0:36:78:36:0,78,863 +chrX 1720038 . TTCCC T, 1060.02 . AS_QUALapprox=|1074|0;AS_VarDP=5|35|0;BaseQRankSum=0.571;DP=47;MQRankSum=2.721;QUALapprox=1074;RAW_GT_COUNT=0,0,1;RAW_MQandDP=167625,47;ReadPosRankSum=-1.146;VarDP=40 GT:AD:DP:GQ:PL:SB 1/1:5,35,0:40:31:1074,31,0,1088,105,1162:5,0,11,24 +chrX 1720043 . T . . END=1720043 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,0 +chrX 1720044 . C . . END=1720046 GT:DP:GQ:MIN_DP:PL 0/0:43:22:42:0,22,1171 +chrX 1720047 . T . . END=1720047 GT:DP:GQ:MIN_DP:PL 0/0:41:19:41:0,19,1166 +chrX 1720048 . C . . END=1720104 GT:DP:GQ:MIN_DP:PL 0/0:42:88:42:0,88,1057 +chrX 1720105 . A G, 1310.06 . AS_QUALapprox=|1324|0;AS_VarDP=0|43|0;DP=49;QUALapprox=1324;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=43 GT:AD:DP:GQ:PL:SB 1/1:0,43,0:43:99:1324,127,0,1324,127,1324:0,0,13,30 +chrX 1720106 . C . . END=1720165 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,111,1435 +chrX 1720166 . A T, 2089.06 . AS_QUALapprox=|2103|0;AS_VarDP=1|48|0;BaseQRankSum=-0.350;DP=55;MQRankSum=0.000;QUALapprox=2103;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;ReadPosRankSum=1.026;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:1,48,0:49:99:0|1:1720166_A_T:2103,102,0,2106,144,2148:1720166:0,1,21,27 +chrX 1720167 . A C, 2089.06 . AS_QUALapprox=|2103|0;AS_VarDP=1|48|0;BaseQRankSum=-0.354;DP=55;MQRankSum=0.000;QUALapprox=2103;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;ReadPosRankSum=1.047;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:1,48,0:49:99:0|1:1720166_A_T:2103,102,0,2106,144,2148:1720166:0,1,21,27 +chrX 1720168 . T . . END=1720225 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 1720226 . ATT A, 1609.03 . AS_QUALapprox=|1623|0;AS_VarDP=1|47|0;BaseQRankSum=-0.390;DP=57;MQRankSum=0.000;QUALapprox=1623;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;ReadPosRankSum=-1.444;VarDP=48 GT:AD:DP:GQ:PL:SB 1/1:1,47,0:48:99:1623,108,0,1626,141,1659:0,1,27,20 +chrX 1720229 . T . . END=1720315 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,105,1490 +chrX 1720316 . G A, 1634.06 . AS_QUALapprox=|1648|0;AS_VarDP=0|50|0;DP=53;QUALapprox=1648;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1648,150,0,1648,150,1648:0,0,28,22 +chrX 1720317 . C . . END=1720635 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1720636 . G A, 592.64 . AS_QUALapprox=|600|0;AS_VarDP=33|23|0;BaseQRankSum=0.274;DP=58;MQRankSum=0.000;QUALapprox=600;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=1.791;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:33,23,0:56:99:600,0,911,699,980,1679:14,19,14,9 +chrX 1720637 . A . . END=1720664 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 1720665 . G A, 683.64 . AS_QUALapprox=|691|0;AS_VarDP=35|26|0;BaseQRankSum=2.441;DP=63;MQRankSum=0.000;QUALapprox=691;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=0.481;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:35,26,0:61:99:691,0,893,796,971,1767:18,17,18,8 +chrX 1720666 . C . . END=1721035 GT:DP:GQ:MIN_DP:PL 0/0:49:52:49:0,52,1003 +chrX 1721036 . TC T, 1568.03 . AS_QUALapprox=|1582|0;AS_VarDP=0|46|0;DP=50;QUALapprox=1582;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1582,138,0,1582,138,1582:0,0,27,19 +chrX 1721038 . C . . END=1721636 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,107,1390 +chrX 1721637 . G A, 917.64 . AS_QUALapprox=|925|0;AS_VarDP=28|34|0;BaseQRankSum=-2.516;DP=66;MQRankSum=-0.875;QUALapprox=925;RAW_GT_COUNT=0,1,0;RAW_MQandDP=236209,66;ReadPosRankSum=-1.182;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:28,34,0:62:99:925,0,787,1010,889,1899:10,18,14,20 +chrX 1721638 . T . . END=1721807 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,101,1519 +chrX 1721808 . T C, 906.64 . AS_QUALapprox=|914|0;AS_VarDP=24|32|0;BaseQRankSum=1.215;DP=58;MQRankSum=-0.276;QUALapprox=914;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201384,58;ReadPosRankSum=-0.248;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:24,32,0:56:99:914,0,615,986,711,1697:11,13,20,12 +chrX 1721809 . A . . END=1721915 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 1721916 . C T, 821.64 . AS_QUALapprox=|829|0;AS_VarDP=35|30|0;BaseQRankSum=2.746;DP=65;MQRankSum=0.642;QUALapprox=829;RAW_GT_COUNT=0,1,0;RAW_MQandDP=227401,65;ReadPosRankSum=0.954;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:35,30,0:65:99:829,0,842,932,932,1865:16,19,12,18 +chrX 1721917 . G . . END=1722230 GT:DP:GQ:MIN_DP:PL 0/0:57:90:57:0,90,1385 +chrX 1722231 . T C, 713.64 . AS_QUALapprox=|721|0;AS_VarDP=24|26|0;BaseQRankSum=1.240;DP=56;MQRankSum=0.000;QUALapprox=721;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-0.437;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:24,26,0:50:99:721,0,624,794,702,1496:13,11,13,13 +chrX 1722232 . T . . END=1722261 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 1722262 . G A, 655.64 . AS_QUALapprox=|663|0;AS_VarDP=23|24|0;BaseQRankSum=0.483;DP=53;MQRankSum=0.000;QUALapprox=663;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=-0.011;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:23,24,0:47:99:663,0,618,732,690,1422:14,9,14,10 +chrX 1722263 . C . . END=1722870 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,110,1800 +chrX 1722871 . A ATAAATAAG, 961.60 . AS_QUALapprox=|969|0;AS_VarDP=32|26|0;BaseQRankSum=1.996;DP=65;MQRankSum=0.000;QUALapprox=969;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=-0.680;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:32,26,0:58:99:969,0,1255,1066,1333,2399:15,17,12,14 +chrX 1722872 . T . . END=1722883 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 1722884 . A . . END=1722885 GT:DP:GQ:MIN_DP:PL 0/0:68:0:68:0,0,1700 +chrX 1722886 . C . . END=1722886 GT:DP:GQ:MIN_DP:PL 0/0:66:24:66:0,24,1715 +chrX 1722887 . T . . END=1722887 GT:DP:GQ:MIN_DP:PL 0/0:68:16:68:0,16,1746 +chrX 1722888 . G . . END=1723286 GT:DP:GQ:MIN_DP:PL 0/0:57:44:57:0,44,1653 +chrX 1723287 . G C, 722.64 . AS_QUALapprox=|730|0;AS_VarDP=23|28|0;BaseQRankSum=-0.947;DP=53;MQRankSum=0.000;QUALapprox=730;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=-1.060;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:23,28,0:51:99:730,0,577,798,661,1459:15,8,23,5 +chrX 1723288 . A . . END=1723372 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 1723373 . G GTAGA, 1068.60 . AS_QUALapprox=|1076|0;AS_VarDP=24|28|0;BaseQRankSum=1.785;DP=64;MQRankSum=0.000;QUALapprox=1076;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=-1.451;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:24,28,0:52:99:1076,0,924,1149,1008,2157:9,15,15,13 +chrX 1723374 . T . . END=1723511 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,104,1528 +chrX 1723512 . A G, 807.64 . AS_QUALapprox=|815|0;AS_VarDP=19|30|0;BaseQRankSum=-2.419;DP=50;MQRankSum=0.000;QUALapprox=815;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=-0.257;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:19,30,0:49:99:815,0,513,872,603,1476:9,10,12,18 +chrX 1723513 . G . . END=1723796 GT:DP:GQ:MIN_DP:PL 0/0:59:69:59:0,69,1456 +chrX 1723797 . TGATA T, 1054.60 . AS_QUALapprox=|1062|0;AS_VarDP=24|27|0;BaseQRankSum=0.320;DP=53;MQRankSum=0.000;QUALapprox=1062;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=2.067;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:24,27,0:51:99:1062,0,904,1134,986,2119:13,11,15,12 +chrX 1723802 . G . . END=1723879 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,113,1449 +chrX 1723880 . GATAC G, 780.60 . AS_QUALapprox=|788|0;AS_VarDP=34|22|0;BaseQRankSum=-0.793;DP=66;MQRankSum=0.000;QUALapprox=788;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=1.846;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:34,22,0:56:99:788,0,1124,884,1191,2074:16,18,13,9 +chrX 1723885 . A . . END=1723967 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,107,1563 +chrX 1723968 . T C, 621.64 . AS_QUALapprox=|629|0;AS_VarDP=33|27|0;BaseQRankSum=-0.643;DP=61;MQRankSum=0.000;QUALapprox=629;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=0.661;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:33,27,0:60:99:629,0,883,728,963,1691:12,21,13,14 +chrX 1723969 . A . . END=1724071 GT:DP:GQ:MIN_DP:PL 0/0:56:70:56:0,70,1469 +chrX 1724072 . A AATAG, 1023.60 . AS_QUALapprox=|1031|0;AS_VarDP=25|27|0;BaseQRankSum=-1.678;DP=58;MQRankSum=0.000;QUALapprox=1031;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208336,58;ReadPosRankSum=-0.797;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,27,0:52:99:0|1:1724072_A_AATAG:1031,0,969,1107,1050,2157:1724072:12,13,10,17 +chrX 1724073 . A . . END=1724099 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1724100 . T TGATA, 2855.03 . AS_QUALapprox=|2869|0;AS_VarDP=0|66|0;DP=67;QUALapprox=2869;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=66 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,66,0:66:99:0|1:1724072_A_AATAG:2869,198,0,2869,198,2869:1724072:0,0,34,32 +chrX 1724101 . G . . END=1724817 GT:DP:GQ:MIN_DP:PL 0/0:62:69:62:0,69,1683 +chrX 1724818 . C T, 817.64 . AS_QUALapprox=|825|0;AS_VarDP=28|31|0;BaseQRankSum=0.516;DP=59;MQRankSum=0.000;QUALapprox=825;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=0.288;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:28,31,0:59:99:825,0,710,909,803,1712:15,13,13,18 +chrX 1724819 . A . . END=1725048 GT:DP:GQ:MIN_DP:PL 0/0:57:93:57:0,93,1449 +chrX 1725049 . CCTGT C, 850.60 . AS_QUALapprox=|858|0;AS_VarDP=33|24|0;BaseQRankSum=0.389;DP=59;MQRankSum=0.000;QUALapprox=858;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-1.706;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:33,24,0:57:99:858,0,1272,957,1344,2302:15,18,13,11 +chrX 1725054 . C . . END=1725325 GT:DP:GQ:MIN_DP:PL 0/0:57:97:57:0,97,1390 +chrX 1725326 . T A, 725.64 . AS_QUALapprox=|733|0;AS_VarDP=25|27|0;BaseQRankSum=0.682;DP=54;MQRankSum=-0.924;QUALapprox=733;RAW_GT_COUNT=0,1,0;RAW_MQandDP=193716,54;ReadPosRankSum=0.321;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:25,27,0:52:99:733,0,608,807,689,1495:12,13,16,11 +chrX 1725327 . T . . END=1725523 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,102,1597 +chrX 1725524 . C T, 585.64 . AS_QUALapprox=|593|0;AS_VarDP=39|25|0;BaseQRankSum=0.327;DP=67;MQRankSum=0.000;QUALapprox=593;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=0.716;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:39,25,0:64:99:593,0,999,709,1073,1782:19,20,9,16 +chrX 1725525 . G . . END=1725844 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 1725845 . G C, 2071.06 . AS_QUALapprox=|2085|0;AS_VarDP=0|62|0;DP=66;QUALapprox=2085;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:0,62,0:62:99:2085,186,0,2085,186,2085:0,0,41,21 +chrX 1725846 . A . . END=1726017 GT:DP:GQ:MIN_DP:PL 0/0:78:99:78:0,120,1800 +chrX 1726018 . A G, 2326.06 . AS_QUALapprox=|2340|0;AS_VarDP=0|73|0;DP=76;QUALapprox=2340;RAW_GT_COUNT=0,0,1;RAW_MQandDP=273600,76;VarDP=73 GT:AD:DP:GQ:PL:SB 1/1:0,73,0:73:99:2340,218,0,2340,218,2340:0,0,24,49 +chrX 1726019 . C . . END=1726032 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,120,1800 +chrX 1726033 . G C, 2208.06 . AS_QUALapprox=|2222|0;AS_VarDP=0|68|0;DP=72;QUALapprox=2222;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;VarDP=68 GT:AD:DP:GQ:PL:SB 1/1:0,68,0:68:99:2222,203,0,2222,203,2222:0,0,19,49 +chrX 1726034 . C . . END=1726534 GT:DP:GQ:MIN_DP:PL 0/0:55:65:55:0,65,1276 +chrX 1726535 . G C, 1679.06 . AS_QUALapprox=|1693|0;AS_VarDP=0|51|0;DP=53;QUALapprox=1693;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158844,53;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1693,153,0,1693,153,1693:0,0,27,24 +chrX 1726536 . A . . END=1726732 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1726733 . A T, 779.64 . AS_QUALapprox=|787|0;AS_VarDP=31|29|0;BaseQRankSum=-0.479;DP=63;MQRankSum=-1.005;QUALapprox=787;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147258,63;ReadPosRankSum=-0.503;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:31,29,0:60:99:787,0,867,881,954,1835:20,11,14,15 +chrX 1726734 . T . . END=1727125 GT:DP:GQ:MIN_DP:PL 0/0:59:84:59:0,84,1574 +chrX 1727126 . C T, 2125.06 . AS_QUALapprox=|2139|0;AS_VarDP=0|64|0;DP=66;QUALapprox=2139;RAW_GT_COUNT=0,0,1;RAW_MQandDP=232524,66;VarDP=64 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:2139,192,0,2139,192,2139:0,0,40,24 +chrX 1727127 . A . . END=1727518 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,120,1800 +chrX 1727519 . T TA, 1150.03 . AS_QUALapprox=|1164|0;AS_VarDP=0|47|0;DP=56;QUALapprox=1164;RAW_GT_COUNT=0,0,1;RAW_MQandDP=199600,56;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1164,141,0,1164,141,1164:0,0,19,28 +chrX 1727520 . A . . END=1728025 GT:DP:GQ:MIN_DP:PL 0/0:60:42:60:0,42,630 +chrX 1728026 . A C, 392.64 . AS_QUALapprox=|400|0;AS_VarDP=23|14|0;BaseQRankSum=2.177;DP=38;MQRankSum=0.269;QUALapprox=400;RAW_GT_COUNT=0,1,0;RAW_MQandDP=125000,38;ReadPosRankSum=0.701;VarDP=37 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,14,0:37:99:0|1:1728026_A_C:400,0,766,470,808,1278:1728026:8,15,8,6 +chrX 1728027 . C CTTTTTTTTTTT, 391.60 . AS_QUALapprox=|399|0;AS_VarDP=14|12|0;BaseQRankSum=1.271;DP=37;MQRankSum=-1.083;QUALapprox=399;RAW_GT_COUNT=0,1,0;RAW_MQandDP=121400,37;ReadPosRankSum=0.381;VarDP=26 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:14,12,0:26:99:1|0:1728026_A_C:399,0,437,442,473,915:1728026:8,6,5,7 +chrX 1728028 . T . . END=1728029 GT:DP:GQ:MIN_DP:PL 0/0:32:18:32:0,18,270 +chrX 1728030 . T . . END=1728054 GT:DP:GQ:MIN_DP:PL 0/0:30:21:28:0,21,315 +chrX 1728055 . TTTG T, 298.60 . AS_QUALapprox=|306|0;AS_VarDP=21|10|0;BaseQRankSum=0.756;DP=31;MQRankSum=0.660;QUALapprox=306;RAW_GT_COUNT=0,1,0;RAW_MQandDP=101800,31;ReadPosRankSum=0.970;VarDP=31 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,10,0:31:99:0|1:1728026_A_C:306,0,730,367,760,1127:1728026:10,11,6,4 +chrX 1728059 . A . . END=1728059 GT:DP:GQ:MIN_DP:PL 0/0:15:10:15:0,10,442 +chrX 1728060 . G A, 187.64 . AS_QUALapprox=|195|0;AS_VarDP=15|6|0;BaseQRankSum=0.451;DP=21;MQRankSum=-0.687;QUALapprox=195;RAW_GT_COUNT=0,1,0;RAW_MQandDP=72500,21;ReadPosRankSum=1.266;VarDP=21 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:15,6,0:21:99:0|1:1728026_A_C:195,0,530,240,548,787:1728026:8,7,2,4 +chrX 1728061 . A . . END=1728066 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,109 +chrX 1728067 . T . . END=1728069 GT:DP:GQ:MIN_DP:PL 0/0:34:67:34:0,67,1022 +chrX 1728070 . C . . END=1728070 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,739 +chrX 1728071 . G . . END=1728875 GT:DP:GQ:MIN_DP:PL 0/0:30:32:27:0,32,740 +chrX 1728876 . AT A, 631.60 . AS_QUALapprox=|639|0;AS_VarDP=23|26|0;BaseQRankSum=0.117;DP=56;MQRankSum=-1.639;QUALapprox=639;RAW_GT_COUNT=0,1,0;RAW_MQandDP=199133,56;ReadPosRankSum=-1.583;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:23,26,0:49:99:639,0,549,708,627,1336:12,11,10,16 +chrX 1728878 . T . . END=1728946 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,111,1471 +chrX 1728947 . G A, 589.64 . AS_QUALapprox=|597|0;AS_VarDP=20|24|0;BaseQRankSum=-0.585;DP=44;MQRankSum=1.229;QUALapprox=597;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154833,44;ReadPosRankSum=-1.214;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:20,24,0:44:99:597,0,503,657,575,1232:8,12,9,15 +chrX 1728948 . T . . END=1728953 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,120,1800 +chrX 1728954 . A G, 2004.06 . AS_QUALapprox=|2018|0;AS_VarDP=0|46|0;DP=46;QUALapprox=2018;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162033,46;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,46,0:46:99:0|1:1728954_A_G:2018,138,0,2018,138,2018:1728954:0,0,17,29 +chrX 1728955 . C . . END=1728961 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,120,1800 +chrX 1728962 . T C, 1935.06 . AS_QUALapprox=|1949|0;AS_VarDP=0|44|0;DP=45;QUALapprox=1949;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158433,45;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,44,0:44:99:0|1:1728954_A_G:1949,132,0,1949,132,1949:1728954:0,0,16,28 +chrX 1728963 . G . . END=1728994 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,120,1800 +chrX 1728995 . G A, 1812.06 . AS_QUALapprox=|1826|0;AS_VarDP=0|56|0;DP=59;QUALapprox=1826;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208833,59;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1826,168,0,1826,168,1826:0,0,21,35 +chrX 1728996 . C . . END=1729166 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1729167 . A G, 1683.06 . AS_QUALapprox=|1697|0;AS_VarDP=0|52|0;DP=53;QUALapprox=1697;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1697,155,0,1697,155,1697:0,0,24,28 +chrX 1729168 . G . . END=1729203 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,115,1588 +chrX 1729204 . C A, 1693.06 . AS_QUALapprox=|1707|0;AS_VarDP=0|50|0;DP=52;QUALapprox=1707;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1707,150,0,1707,150,1707:0,0,28,22 +chrX 1729205 . G . . END=1729546 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,107,1366 +chrX 1729547 . GAAAA G,AAAAA, 841.60 . AS_QUALapprox=|849|0|0;AS_VarDP=18|23|3|0;BaseQRankSum=1.152;DP=67;MQRankSum=0.000;QUALapprox=849;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=0.573;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:18,23,3,0:44:99:849,0,943,870,479,1700,964,824,1601,1861:10,8,11,15 +chrX 1729552 . A . . END=1730167 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,102,1717 +chrX 1730168 . A G, 461.64 . AS_QUALapprox=|469|0;AS_VarDP=26|19|0;BaseQRankSum=-0.215;DP=49;MQRankSum=0.399;QUALapprox=469;RAW_GT_COUNT=0,1,0;RAW_MQandDP=170595,49;ReadPosRankSum=0.897;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:26,19,0:45:99:469,0,719,547,776,1323:10,16,11,8 +chrX 1730169 . G . . END=1730339 GT:DP:GQ:MIN_DP:PL 0/0:46:96:46:0,96,1181 +chrX 1730340 . T C, 1259.06 . AS_QUALapprox=|1273|0;AS_VarDP=0|42|0;DP=46;QUALapprox=1273;RAW_GT_COUNT=0,0,1;RAW_MQandDP=164809,46;VarDP=42 GT:AD:DP:GQ:PL:SB 1/1:0,42,0:42:99:1273,125,0,1273,125,1273:0,0,18,24 +chrX 1730341 . G . . END=1730678 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,100,1315 +chrX 1730679 . C G, 1756.06 . AS_QUALapprox=|1770|0;AS_VarDP=0|53|0;DP=54;QUALapprox=1770;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1770,159,0,1770,159,1770:0,0,25,28 +chrX 1730680 . C . . END=1730853 GT:DP:GQ:MIN_DP:PL 0/0:51:95:51:0,95,1494 +chrX 1730854 . T C, 658.64 . AS_QUALapprox=|666|0;AS_VarDP=25|23|0;BaseQRankSum=0.970;DP=51;MQRankSum=0.000;QUALapprox=666;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=1.579;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:25,23,0:48:99:666,0,692,741,762,1502:11,14,12,11 +chrX 1730855 . T . . END=1731021 GT:DP:GQ:MIN_DP:PL 0/0:45:50:45:0,50,978 +chrX 1731022 . A . . END=1731024 GT:DP:GQ:MIN_DP:PL 0/0:40:1:40:0,1,1042 +chrX 1731025 . T TAAA, 1222.03 . AS_QUALapprox=|1236|0;AS_VarDP=0|29|0;DP=40;QUALapprox=1236;RAW_GT_COUNT=0,0,1;RAW_MQandDP=144000,40;VarDP=29 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,29,0:29:87:0|1:1731025_T_TAAA:1236,87,0,1236,87,1237:1731025:0,0,17,12 +chrX 1731026 . A . . END=1731047 GT:DP:GQ:MIN_DP:PL 0/0:39:67:38:0,67,943 +chrX 1731048 . C T, 1576.06 . AS_QUALapprox=|1590|0;AS_VarDP=0|42|0;DP=42;QUALapprox=1590;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151200,42;VarDP=42 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,42,0:42:99:0|1:1731025_T_TAAA:1590,126,0,1590,126,1590:1731025:0,0,24,18 +chrX 1731049 . G . . END=1731216 GT:DP:GQ:MIN_DP:PL 0/0:46:78:46:0,78,1017 +chrX 1731217 . T C, 835.06 . AS_QUALapprox=|849|0;AS_VarDP=0|25|0;DP=25;QUALapprox=849;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=25 GT:AD:DP:GQ:PL:SB 1/1:0,25,0:25:75:849,75,0,849,75,849:0,0,10,15 +chrX 1731218 . G . . END=1731278 GT:DP:GQ:MIN_DP:PL 0/0:20:39:16:0,39,585 +chrX 1731279 . C G, 508.06 . AS_QUALapprox=|522|0;AS_VarDP=0|15|0;DP=16;QUALapprox=522;RAW_GT_COUNT=0,0,1;RAW_MQandDP=57600,16;VarDP=15 GT:AD:DP:GQ:PL:SB 1/1:0,15,0:15:45:522,45,0,522,45,522:0,0,9,6 +chrX 1731280 . A . . END=1731311 GT:DP:GQ:MIN_DP:PL 0/0:15:20:14:0,20,387 +chrX 1731312 . A . . END=1731312 GT:DP:GQ:MIN_DP:PL 0/0:14:17:14:0,17,427 +chrX 1731313 . G . . END=1731322 GT:DP:GQ:MIN_DP:PL 0/0:17:33:17:0,33,495 +chrX 1731323 . CAAAAAAAAAAAAAAAAA C, 435.60 . AS_QUALapprox=|443|0;AS_VarDP=12|12|0;DP=37;MQRankSum=0.000;QUALapprox=443;RAW_GT_COUNT=0,1,0;RAW_MQandDP=129625,37;VarDP=24 GT:AD:DP:GQ:PL:SB 0/1:12,12,0:24:99:443,0,440,479,478,957:1,11,5,7 +chrX 1731341 . A . . END=1731359 GT:DP:GQ:MIN_DP:PL 0/0:33:78:33:0,78,983 +chrX 1731360 . G T, 298.64 . AS_QUALapprox=|306|0;AS_VarDP=24|13|0;BaseQRankSum=0.685;DP=37;MQRankSum=1.096;QUALapprox=306;RAW_GT_COUNT=0,1,0;RAW_MQandDP=129625,37;ReadPosRankSum=1.098;VarDP=37 GT:AD:DP:GQ:PL:SB 0/1:24,13,0:37:99:306,0,786,377,824,1202:7,17,2,11 +chrX 1731361 . G . . END=1731616 GT:DP:GQ:MIN_DP:PL 0/0:45:80:45:0,80,1266 +chrX 1731617 . A G, 1515.06 . AS_QUALapprox=|1529|0;AS_VarDP=0|46|0;DP=50;QUALapprox=1529;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1529,138,0,1529,138,1529:0,0,23,23 +chrX 1731618 . C . . END=1731701 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,102,1465 +chrX 1731702 . C T, 669.64 . AS_QUALapprox=|677|0;AS_VarDP=28|26|0;BaseQRankSum=0.779;DP=55;MQRankSum=0.000;QUALapprox=677;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=1.325;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:28,26,0:54:99:677,0,716,761,794,1554:13,15,16,10 +chrX 1731703 . A . . END=1731859 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 1731860 . A C, 954.64 . AS_QUALapprox=|962|0;AS_VarDP=21|34|0;BaseQRankSum=-1.597;DP=56;MQRankSum=0.000;QUALapprox=962;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=0.347;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:21,34,0:55:99:962,0,565,1025,667,1692:11,10,13,21 +chrX 1731861 . A . . END=1732193 GT:DP:GQ:MIN_DP:PL 0/0:53:73:53:0,73,1325 +chrX 1732194 . CTTT C, 562.60 . AS_QUALapprox=|570|0;AS_VarDP=5|17|0;BaseQRankSum=-0.919;DP=43;MQRankSum=1.576;QUALapprox=570;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147765,43;ReadPosRankSum=0.708;VarDP=22 GT:AD:DP:GQ:PL:SB 0/1:5,17,0:22:33:570,0,33,585,84,669:4,1,8,9 +chrX 1732198 . T . . END=1732267 GT:DP:GQ:MIN_DP:PL 0/0:28:38:21:0,38,630 +chrX 1732268 . G A, 939.06 . AS_QUALapprox=|953|0;AS_VarDP=1|30|0;BaseQRankSum=2.354;DP=32;MQRankSum=0.000;QUALapprox=953;RAW_GT_COUNT=0,0,1;RAW_MQandDP=113281,32;ReadPosRankSum=0.392;VarDP=31 GT:AD:DP:GQ:PL:SB 1/1:1,30,0:31:82:953,82,0,955,89,962:0,1,16,14 +chrX 1732269 . G . . END=1732482 GT:DP:GQ:MIN_DP:PL 0/0:59:92:59:0,92,1122 +chrX 1732483 . C A, 817.64 . AS_QUALapprox=|825|0;AS_VarDP=32|33|0;BaseQRankSum=-1.156;DP=69;MQRankSum=0.000;QUALapprox=825;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=0.046;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:32,33,0:65:99:825,0,846,921,945,1866:15,17,16,17 +chrX 1732484 . C . . END=1732771 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1732772 . A T, 1036.64 . AS_QUALapprox=|1044|0;AS_VarDP=26|36|0;BaseQRankSum=-0.249;DP=62;MQRankSum=0.000;QUALapprox=1044;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=1.591;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:26,36,0:62:99:1044,0,687,1122,796,1918:14,12,15,21 +chrX 1732773 . A . . END=1733074 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,102,1464 +chrX 1733075 . C T, 1029.64 . AS_QUALapprox=|1037|0;AS_VarDP=26|39|0;BaseQRankSum=1.054;DP=65;MQRankSum=0.000;QUALapprox=1037;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=-1.440;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:26,39,0:65:99:1037,0,564,1113,681,1795:9,17,21,18 +chrX 1733076 . A . . END=1733285 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1733286 . AG A, 1732.03 . AS_QUALapprox=|1746|0;AS_VarDP=0|49|0;DP=51;QUALapprox=1746;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1746,147,0,1746,147,1746:0,0,24,25 +chrX 1733288 . G . . END=1733500 GT:DP:GQ:MIN_DP:PL 0/0:44:59:39:0,59,1095 +chrX 1733501 . C CAAAA, 1117.60 . AS_QUALapprox=|1125|0;AS_VarDP=10|31|0;BaseQRankSum=-0.247;DP=51;MQRankSum=0.000;QUALapprox=1125;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-0.407;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:10,31,0:41:99:1125,0,328,1156,420,1576:5,5,16,15 +chrX 1733502 . A . . END=1733546 GT:DP:GQ:MIN_DP:PL 0/0:48:27:46:0,27,1243 +chrX 1733547 . A G, 694.64 . AS_QUALapprox=|702|0;AS_VarDP=14|30|0;BaseQRankSum=-2.688;DP=47;MQRankSum=0.000;QUALapprox=702;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=-0.353;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:14,30,0:44:99:702,0,357,744,445,1188:8,6,14,16 +chrX 1733548 . A . . END=1733816 GT:DP:GQ:MIN_DP:PL 0/0:56:92:56:0,92,1519 +chrX 1733817 . T G, 445.64 . AS_QUALapprox=|453|0;AS_VarDP=36|20|0;BaseQRankSum=-1.360;DP=58;MQRankSum=0.000;QUALapprox=453;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-0.342;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:36,20,0:56:99:453,0,1004,560,1064,1624:18,18,10,10 +chrX 1733818 . T . . END=1733925 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 1733926 . A ATT, 575.60 . AS_QUALapprox=|583|0;AS_VarDP=25|21|0;BaseQRankSum=-1.144;DP=58;MQRankSum=-1.047;QUALapprox=583;RAW_GT_COUNT=0,1,0;RAW_MQandDP=206800,58;ReadPosRankSum=1.809;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:25,21,0:46:99:583,0,718,659,781,1440:13,12,9,12 +chrX 1733927 . T . . END=1733974 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 1733975 . G C, 606.64 . AS_QUALapprox=|614|0;AS_VarDP=33|24|0;BaseQRankSum=1.368;DP=59;MQRankSum=-1.137;QUALapprox=614;RAW_GT_COUNT=0,1,0;RAW_MQandDP=209825,59;ReadPosRankSum=-1.196;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:33,24,0:57:99:614,0,882,713,953,1666:17,16,10,14 +chrX 1733976 . C . . END=1734520 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,104,1554 +chrX 1734521 . G A, 586.64 . AS_QUALapprox=|594|0;AS_VarDP=28|22|0;BaseQRankSum=1.454;DP=55;MQRankSum=-1.088;QUALapprox=594;RAW_GT_COUNT=0,1,0;RAW_MQandDP=197649,55;ReadPosRankSum=-0.518;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:28,22,0:50:99:594,0,753,679,819,1498:13,15,13,9 +chrX 1734522 . G . . END=1734729 GT:DP:GQ:MIN_DP:PL 0/0:55:66:55:0,66,1268 +chrX 1734730 . G A, 1220.64 . AS_QUALapprox=|1228|0;AS_VarDP=21|31|0;BaseQRankSum=-1.538;DP=52;MQRankSum=0.280;QUALapprox=1228;RAW_GT_COUNT=0,1,0;RAW_MQandDP=184304,52;ReadPosRankSum=-0.718;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,31,0:52:99:0|1:1734730_G_A:1228,0,763,1291,856,2147:1734730:14,7,17,14 +chrX 1734731 . C A, 1220.64 . AS_QUALapprox=|1228|0;AS_VarDP=21|31|0;BaseQRankSum=-1.549;DP=53;MQRankSum=0.280;QUALapprox=1228;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187904,53;ReadPosRankSum=-0.690;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,31,0:52:99:0|1:1734730_G_A:1228,0,763,1291,856,2147:1734730:14,7,17,14 +chrX 1734732 . C . . END=1735069 GT:DP:GQ:MIN_DP:PL 0/0:52:82:52:0,82,1195 +chrX 1735070 . TCCTCCTTCTTTCCC T, 711.60 . AS_QUALapprox=|719|0;AS_VarDP=15|19|0;BaseQRankSum=1.404;DP=44;MQRankSum=-0.829;QUALapprox=719;RAW_GT_COUNT=0,1,0;RAW_MQandDP=156400,44;ReadPosRankSum=-0.384;VarDP=34 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:15,19,0:34:99:0|1:1735070_TCCTCCTTCTTTCCC_T:719,0,540,764,597,1362:1735070:7,8,5,14 +chrX 1735085 . C . . END=1735117 GT:DP:GQ:MIN_DP:PL 0/0:33:60:33:0,60,819 +chrX 1735118 . T C, 924.06 . AS_QUALapprox=|938|0;AS_VarDP=0|26|0;DP=28;QUALapprox=938;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=26 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,26,0:26:77:0|1:1735070_TCCTCCTTCTTTCCC_T:938,77,0,938,77,938:1735070:0,0,8,18 +chrX 1735119 . T . . END=1735128 GT:DP:GQ:MIN_DP:PL 0/0:29:52:29:0,52,813 +chrX 1735129 . T . . END=1735129 GT:DP:GQ:MIN_DP:PL 0/0:27:11:27:0,11,719 +chrX 1735130 . C . . END=1735142 GT:DP:GQ:MIN_DP:PL 0/0:27:46:27:0,46,720 +chrX 1735143 . A . . END=1735143 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,297 +chrX 1735144 . C . . END=1735147 GT:DP:GQ:MIN_DP:PL 0/0:21:45:21:0,45,675 +chrX 1735148 . T . . END=1735148 GT:DP:GQ:MIN_DP:PL 0/0:22:17:22:0,17,546 +chrX 1735149 . C . . END=1735156 GT:DP:GQ:MIN_DP:PL 0/0:22:28:21:0,28,564 +chrX 1735157 . T . . END=1735158 GT:DP:GQ:MIN_DP:PL 0/0:18:0:18:0,0,421 +chrX 1735159 . C . . END=1735160 GT:DP:GQ:MIN_DP:PL 0/0:20:51:20:0,51,765 +chrX 1735161 . C . . END=1735161 GT:DP:GQ:MIN_DP:PL 0/0:20:11:20:0,11,527 +chrX 1735162 . C . . END=1735162 GT:DP:GQ:MIN_DP:PL 0/0:18:51:18:0,51,765 +chrX 1735163 . T . . END=1735164 GT:DP:GQ:MIN_DP:PL 0/0:18:16:18:0,16,515 +chrX 1735165 . C . . END=1735165 GT:DP:GQ:MIN_DP:PL 0/0:16:48:16:0,48,556 +chrX 1735166 . T . . END=1735168 GT:DP:GQ:MIN_DP:PL 0/0:17:4:17:0,4,466 +chrX 1735169 . C . . END=1735169 GT:DP:GQ:MIN_DP:PL 0/0:18:48:18:0,48,720 +chrX 1735170 . C . . END=1735171 GT:DP:GQ:MIN_DP:PL 0/0:18:0:18:0,0,446 +chrX 1735172 . T . . END=1735188 GT:DP:GQ:MIN_DP:PL 0/0:17:36:16:0,36,495 +chrX 1735189 . T . . END=1735189 GT:DP:GQ:MIN_DP:PL 0/0:17:16:17:0,16,440 +chrX 1735190 . C . . END=1735192 GT:DP:GQ:MIN_DP:PL 0/0:17:33:17:0,33,495 +chrX 1735193 . T . . END=1735193 GT:DP:GQ:MIN_DP:PL 0/0:17:16:17:0,16,511 +chrX 1735194 . T . . END=1735194 GT:DP:GQ:MIN_DP:PL 0/0:17:30:17:0,30,450 +chrX 1735195 . C . . END=1735198 GT:DP:GQ:MIN_DP:PL 0/0:17:0:17:0,0,233 +chrX 1735199 . C . . END=1735199 GT:DP:GQ:MIN_DP:PL 0/0:16:30:16:0,30,450 +chrX 1735200 . C . . END=1735200 GT:DP:GQ:MIN_DP:PL 0/0:16:13:16:0,13,487 +chrX 1735201 . T . . END=1735207 GT:DP:GQ:MIN_DP:PL 0/0:13:30:13:0,30,450 +chrX 1735208 . C . . END=1735208 GT:DP:GQ:MIN_DP:PL 0/0:12:1:12:0,1,317 +chrX 1735209 . C . . END=1735209 GT:DP:GQ:MIN_DP:PL 0/0:12:33:12:0,33,495 +chrX 1735210 . T . . END=1735210 GT:DP:GQ:MIN_DP:PL 0/0:12:1:12:0,1,327 +chrX 1735211 . T . . END=1735219 GT:DP:GQ:MIN_DP:PL 0/0:11:30:11:0,30,338 +chrX 1735220 . C . . END=1735220 GT:DP:GQ:MIN_DP:PL 0/0:11:8:11:0,8,323 +chrX 1735221 . C . . END=1735224 GT:DP:GQ:MIN_DP:PL 0/0:11:27:11:0,27,405 +chrX 1735225 . A . . END=1735225 GT:DP:GQ:MIN_DP:PL 0/0:10:0:10:0,0,0 +chrX 1735226 . T . . END=1735236 GT:DP:GQ:MIN_DP:PL 0/0:10:24:10:0,24,278 +chrX 1735237 . C . . END=1735247 GT:DP:GQ:MIN_DP:PL 0/0:9:16:9:0,16,270 +chrX 1735248 . C . . END=1735248 GT:DP:GQ:MIN_DP:PL 0/0:10:21:10:0,21,315 +chrX 1735249 . T . . END=1735336 GT:DP:GQ:MIN_DP:PL 0/0:7:0:7:0,0,0 +chrX 1735337 . C . . END=1735337 GT:DP:GQ:MIN_DP:PL 0/0:9:24:9:0,24,360 +chrX 1735338 . T . . END=1735338 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,303 +chrX 1735339 . C . . END=1735340 GT:DP:GQ:MIN_DP:PL 0/0:11:27:10:0,27,348 +chrX 1735341 . T . . END=1735341 GT:DP:GQ:MIN_DP:PL 0/0:11:8:11:0,8,303 +chrX 1735342 . C . . END=1735343 GT:DP:GQ:MIN_DP:PL 0/0:11:27:11:0,27,405 +chrX 1735344 . A . . END=1735344 GT:DP:GQ:MIN_DP:PL 0/0:12:0:12:0,0,248 +chrX 1735345 . C . . END=1735345 GT:DP:GQ:MIN_DP:PL 0/0:13:30:13:0,30,450 +chrX 1735346 . T . . END=1735347 GT:DP:GQ:MIN_DP:PL 0/0:13:4:13:0,4,352 +chrX 1735348 . T . . END=1735349 GT:DP:GQ:MIN_DP:PL 0/0:13:30:13:0,30,450 +chrX 1735350 . T . . END=1735365 GT:DP:GQ:MIN_DP:PL 0/0:13:0:13:0,0,164 +chrX 1735366 . T . . END=1735367 GT:DP:GQ:MIN_DP:PL 0/0:14:27:14:0,27,405 +chrX 1735368 . T . . END=1735372 GT:DP:GQ:MIN_DP:PL 0/0:15:0:15:0,0,268 +chrX 1735373 . C . . END=1735373 GT:DP:GQ:MIN_DP:PL 0/0:17:26:17:0,26,461 +chrX 1735374 . C . . END=1735375 GT:DP:GQ:MIN_DP:PL 0/0:17:9:17:0,9,387 +chrX 1735376 . C . . END=1735377 GT:DP:GQ:MIN_DP:PL 0/0:17:26:16:0,26,461 +chrX 1735378 . T . . END=1735378 GT:DP:GQ:MIN_DP:PL 0/0:15:0:15:0,0,342 +chrX 1735379 . C . . END=1735379 GT:DP:GQ:MIN_DP:PL 0/0:16:33:16:0,33,495 +chrX 1735380 . C . . END=1735383 GT:DP:GQ:MIN_DP:PL 0/0:18:13:18:0,13,416 +chrX 1735384 . T . . END=1735384 GT:DP:GQ:MIN_DP:PL 0/0:17:33:17:0,33,495 +chrX 1735385 . T . . END=1735385 GT:DP:GQ:MIN_DP:PL 0/0:17:16:17:0,16,481 +chrX 1735386 . T . . END=1735386 GT:DP:GQ:MIN_DP:PL 0/0:18:36:18:0,36,540 +chrX 1735387 . C . . END=1735394 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,228 +chrX 1735395 . C . . END=1735396 GT:DP:GQ:MIN_DP:PL 0/0:17:42:17:0,42,630 +chrX 1735397 . T . . END=1735398 GT:DP:GQ:MIN_DP:PL 0/0:18:19:18:0,19,465 +chrX 1735399 . T . . END=1735415 GT:DP:GQ:MIN_DP:PL 0/0:19:22:19:0,22,510 +chrX 1735416 . T TCTCCCTCCTCTC, 163.60 . AS_QUALapprox=|171|0;AS_VarDP=13|5|0;BaseQRankSum=0.498;DP=34;MQRankSum=0.000;QUALapprox=171;RAW_GT_COUNT=0,1,0;RAW_MQandDP=122400,34;ReadPosRankSum=1.085;VarDP=18 GT:AD:DP:GQ:PL:SB 0/1:13,5,0:18:99:171,0,501,210,516,726:11,2,4,1 +chrX 1735417 . C . . END=1735461 GT:DP:GQ:MIN_DP:PL 0/0:20:35:19:0,35,535 +chrX 1735462 . T TCTCCTCCTTCTCC, 371.60 . AS_QUALapprox=|379|0;AS_VarDP=6|10|0;BaseQRankSum=2.053;DP=35;MQRankSum=-1.352;QUALapprox=379;RAW_GT_COUNT=0,1,0;RAW_MQandDP=117422,35;ReadPosRankSum=-2.118;VarDP=16 GT:AD:DP:GQ:PL:SB 0/1:6,10,0:16:99:379,0,224,399,254,653:4,2,9,1 +chrX 1735463 . C . . END=1735467 GT:DP:GQ:MIN_DP:PL 0/0:25:57:25:0,57,855 +chrX 1735468 . CTTT C, 238.60 . AS_QUALapprox=|246|0;AS_VarDP=13|7|0;BaseQRankSum=-0.734;DP=36;MQRankSum=1.402;QUALapprox=246;RAW_GT_COUNT=0,1,0;RAW_MQandDP=121022,36;ReadPosRankSum=2.036;VarDP=20 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:13,7,0:20:99:0|1:1735468_CTTT_C:246,0,503,285,525,811:1735468:11,2,4,3 +chrX 1735472 . CTCCCTCCTCT C, 235.60 . AS_QUALapprox=|243|0;AS_VarDP=14|7|0;BaseQRankSum=-0.140;DP=37;MQRankSum=1.348;QUALapprox=243;RAW_GT_COUNT=0,1,0;RAW_MQandDP=122111,37;ReadPosRankSum=1.670;VarDP=21 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:14,7,0:21:99:0|1:1735468_CTTT_C:243,0,534,285,556,841:1735468:11,3,4,3 +chrX 1735483 . T . . END=1735556 GT:DP:GQ:MIN_DP:PL 0/0:19:22:16:0,22,513 +chrX 1735557 . G A, 193.64 . AS_QUALapprox=|201|0;AS_VarDP=10|8|0;BaseQRankSum=2.263;DP=27;MQRankSum=1.006;QUALapprox=201;RAW_GT_COUNT=0,1,0;RAW_MQandDP=92624,27;ReadPosRankSum=1.780;VarDP=18 GT:AD:DP:GQ:PL:SB 0/1:10,8,0:18:99:201,0,176,229,200,429:5,5,0,8 +chrX 1735558 . T . . END=1735598 GT:DP:GQ:MIN_DP:PL 0/0:20:25:17:0,25,481 +chrX 1735599 . T . . END=1735599 GT:DP:GQ:MIN_DP:PL 0/0:18:5:18:0,5,507 +chrX 1735600 . C . . END=1735601 GT:DP:GQ:MIN_DP:PL 0/0:19:22:18:0,22,546 +chrX 1735602 . C . . END=1735603 GT:DP:GQ:MIN_DP:PL 0/0:18:0:18:0,0,417 +chrX 1735604 . C . . END=1735605 GT:DP:GQ:MIN_DP:PL 0/0:18:48:18:0,48,720 +chrX 1735606 . A . . END=1735606 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,318 +chrX 1735607 . C . . END=1735608 GT:DP:GQ:MIN_DP:PL 0/0:17:48:17:0,48,720 +chrX 1735609 . T . . END=1735609 GT:DP:GQ:MIN_DP:PL 0/0:17:16:17:0,16,511 +chrX 1735610 . C . . END=1735617 GT:DP:GQ:MIN_DP:PL 0/0:17:26:15:0,26,501 +chrX 1735618 . T . . END=1735618 GT:DP:GQ:MIN_DP:PL 0/0:17:12:17:0,12,422 +chrX 1735619 . T . . END=1735633 GT:DP:GQ:MIN_DP:PL 0/0:16:33:16:0,33,495 +chrX 1735634 . C . . END=1735634 GT:DP:GQ:MIN_DP:PL 0/0:14:7:14:0,7,397 +chrX 1735635 . C . . END=1735635 GT:DP:GQ:MIN_DP:PL 0/0:14:36:14:0,36,540 +chrX 1735636 . T . . END=1735636 GT:DP:GQ:MIN_DP:PL 0/0:12:0:12:0,0,258 +chrX 1735637 . C . . END=1735639 GT:DP:GQ:MIN_DP:PL 0/0:13:33:13:0,33,495 +chrX 1735640 . C . . END=1735640 GT:DP:GQ:MIN_DP:PL 0/0:13:4:13:0,4,382 +chrX 1735641 . C . . END=1735641 GT:DP:GQ:MIN_DP:PL 0/0:13:33:13:0,33,495 +chrX 1735642 . T . . END=1735643 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,288 +chrX 1735644 . C . . END=1735644 GT:DP:GQ:MIN_DP:PL 0/0:14:39:14:0,39,585 +chrX 1735645 . T . . END=1735645 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,217 +chrX 1735646 . T . . END=1735648 GT:DP:GQ:MIN_DP:PL 0/0:13:30:13:0,30,348 +chrX 1735649 . C . . END=1735649 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,288 +chrX 1735650 . C . . END=1735650 GT:DP:GQ:MIN_DP:PL 0/0:14:36:14:0,36,540 +chrX 1735651 . C . . END=1735652 GT:DP:GQ:MIN_DP:PL 0/0:15:0:15:0,0,243 +chrX 1735653 . T . . END=1735654 GT:DP:GQ:MIN_DP:PL 0/0:14:39:14:0,39,432 +chrX 1735655 . C . . END=1735655 GT:DP:GQ:MIN_DP:PL 0/0:17:0:17:0,0,184 +chrX 1735656 . C . . END=1735656 GT:DP:GQ:MIN_DP:PL 0/0:16:45:16:0,45,675 +chrX 1735657 . C . . END=1735657 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,149 +chrX 1735658 . C . . END=1735668 GT:DP:GQ:MIN_DP:PL 0/0:16:23:16:0,23,467 +chrX 1735669 . C . . END=1735669 GT:DP:GQ:MIN_DP:PL 0/0:17:16:17:0,16,196 +chrX 1735670 . T . . END=1735676 GT:DP:GQ:MIN_DP:PL 0/0:11:33:11:0,33,352 +chrX 1735677 . C CTCCT,CT, 242.02 . AS_QUALapprox=|216|47|0;AS_VarDP=0|6|1|0;DP=19;QUALapprox=259;RAW_GT_COUNT=0,0,1;RAW_MQandDP=58511,19;VarDP=7 GT:AD:DP:GQ:PL:SB 1/2:0,6,1,0:7:43:259,43,107,216,0,212,264,87,221,303:0,0,2,5 +chrX 1735678 . C . . END=1735683 GT:DP:GQ:MIN_DP:PL 0/0:14:36:13:0,36,407 +chrX 1735684 . C CCTCTTTCTCTCCCTCCTT, 72.60 . AS_QUALapprox=|80|0;AS_VarDP=8|3|0;BaseQRankSum=0.000;DP=23;MQRankSum=-0.301;QUALapprox=80;RAW_GT_COUNT=0,1,0;RAW_MQandDP=72792,23;ReadPosRankSum=-2.362;VarDP=11 GT:AD:DP:GQ:PL:SB 0/1:8,3,0:11:80:80,0,295,105,305,410:2,6,3,0 +chrX 1735685 . T . . END=1735690 GT:DP:GQ:MIN_DP:PL 0/0:17:36:17:0,36,536 +chrX 1735691 . T . . END=1735691 GT:DP:GQ:MIN_DP:PL 0/0:17:12:17:0,12,462 +chrX 1735692 . C . . END=1735699 GT:DP:GQ:MIN_DP:PL 0/0:18:30:16:0,30,444 +chrX 1735700 . T TTTCTCTCCCTCCTC,*, 125.60 . AS_QUALapprox=|133|0|0;AS_VarDP=3|4|0|0;BaseQRankSum=-1.068;DP=20;MQRankSum=-0.180;QUALapprox=133;RAW_GT_COUNT=0,1,0;RAW_MQandDP=65556,20;ReadPosRankSum=1.006;VarDP=7 GT:AD:DP:GQ:PL:SB 0/1:3,4,0,0:7:99:133,0,199,154,139,416,160,184,360,388:3,0,1,3 +chrX 1735701 . T . . END=1735703 GT:DP:GQ:MIN_DP:PL 0/0:15:20:15:0,20,411 +chrX 1735704 . T . . END=1735704 GT:DP:GQ:MIN_DP:PL 0/0:14:3:14:0,3,358 +chrX 1735705 . C . . END=1735705 GT:DP:GQ:MIN_DP:PL 0/0:14:28:14:0,28,397 +chrX 1735706 . T . . END=1735706 GT:DP:GQ:MIN_DP:PL 0/0:14:13:14:0,13,368 +chrX 1735707 . C . . END=1735707 GT:DP:GQ:MIN_DP:PL 0/0:13:36:13:0,36,540 +chrX 1735708 . C . . END=1735708 GT:DP:GQ:MIN_DP:PL 0/0:14:17:14:0,17,427 +chrX 1735709 . C . . END=1735709 GT:DP:GQ:MIN_DP:PL 0/0:14:36:14:0,36,540 +chrX 1735710 . T . . END=1735710 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,348 +chrX 1735711 . C . . END=1735713 GT:DP:GQ:MIN_DP:PL 0/0:13:36:13:0,36,540 +chrX 1735714 . C . . END=1735716 GT:DP:GQ:MIN_DP:PL 0/0:14:4:14:0,4,382 +chrX 1735717 . C . . END=1735728 GT:DP:GQ:MIN_DP:PL 0/0:18:23:16:0,23,426 +chrX 1735729 . T . . END=1735729 GT:DP:GQ:MIN_DP:PL 0/0:18:19:18:0,19,546 +chrX 1735730 . T . . END=1735733 GT:DP:GQ:MIN_DP:PL 0/0:22:31:21:0,31,625 +chrX 1735734 . T . . END=1735734 GT:DP:GQ:MIN_DP:PL 0/0:22:6:22:0,6,565 +chrX 1735735 . C . . END=1735757 GT:DP:GQ:MIN_DP:PL 0/0:25:40:25:0,40,594 +chrX 1735758 . C . . END=1735758 GT:DP:GQ:MIN_DP:PL 0/0:27:11:27:0,11,709 +chrX 1735759 . T . . END=1735787 GT:DP:GQ:MIN_DP:PL 0/0:28:29:26:0,29,744 +chrX 1735788 . TCTTTCTCCCTCCTC T, 370.02 . AS_QUALapprox=|384|0;AS_VarDP=0|13|0;DP=19;QUALapprox=384;RAW_GT_COUNT=0,0,1;RAW_MQandDP=40543,19;VarDP=13 GT:AD:DP:GQ:PL:SB 1/1:0,13,0:13:37:384,37,0,384,37,384:0,0,9,4 +chrX 1735803 . C . . END=1735804 GT:DP:GQ:MIN_DP:PL 0/0:23:31:22:0,31,665 +chrX 1735805 . T . . END=1735805 GT:DP:GQ:MIN_DP:PL 0/0:22:0:22:0,0,505 +chrX 1735806 . T . . END=1735817 GT:DP:GQ:MIN_DP:PL 0/0:23:25:20:0,25,565 +chrX 1735818 . T . . END=1735818 GT:DP:GQ:MIN_DP:PL 0/0:21:0:21:0,0,442 +chrX 1735819 . C . . END=1735823 GT:DP:GQ:MIN_DP:PL 0/0:22:22:20:0,22,530 +chrX 1735824 . T . . END=1735825 GT:DP:GQ:MIN_DP:PL 0/0:20:8:20:0,8,501 +chrX 1735826 . C . . END=1735829 GT:DP:GQ:MIN_DP:PL 0/0:19:22:19:0,22,530 +chrX 1735830 . C . . END=1735831 GT:DP:GQ:MIN_DP:PL 0/0:17:5:17:0,5,457 +chrX 1735832 . C . . END=1735832 GT:DP:GQ:MIN_DP:PL 0/0:18:30:18:0,30,450 +chrX 1735833 . C . . END=1735836 GT:DP:GQ:MIN_DP:PL 0/0:13:0:13:0,0,0 +chrX 1735837 . T . . END=1735837 GT:DP:GQ:MIN_DP:PL 0/0:13:27:13:0,27,405 +chrX 1735838 . T . . END=1735838 GT:DP:GQ:MIN_DP:PL 0/0:13:4:13:0,4,311 +chrX 1735839 . C . . END=1735849 GT:DP:GQ:MIN_DP:PL 0/0:10:21:10:0,21,233 +chrX 1735850 . G . . END=1735902 GT:DP:GQ:MIN_DP:PL 0/0:6:0:6:0,0,25 +chrX 1735903 . C . . END=1735911 GT:DP:GQ:MIN_DP:PL 0/0:10:21:8:0,21,233 +chrX 1735912 . C . . END=1735914 GT:DP:GQ:MIN_DP:PL 0/0:12:0:12:0,0,0 +chrX 1735915 . C . . END=1735927 GT:DP:GQ:MIN_DP:PL 0/0:14:28:13:0,28,428 +chrX 1735928 . C . . END=1735930 GT:DP:GQ:MIN_DP:PL 0/0:18:0:18:0,0,0 +chrX 1735931 . C . . END=1735945 GT:DP:GQ:MIN_DP:PL 0/0:20:42:20:0,42,446 +chrX 1735946 . G . . END=1735946 GT:DP:GQ:MIN_DP:PL 0/0:20:0:20:0,0,0 +chrX 1735947 . C . . END=1735961 GT:DP:GQ:MIN_DP:PL 0/0:27:60:27:0,60,669 +chrX 1735962 . G . . END=1735962 GT:DP:GQ:MIN_DP:PL 0/0:26:0:26:0,0,0 +chrX 1735963 . C . . END=1735993 GT:DP:GQ:MIN_DP:PL 0/0:30:46:30:0,46,596 +chrX 1735994 . G . . END=1735994 GT:DP:GQ:MIN_DP:PL 0/0:23:9:23:0,9,570 +chrX 1735995 . C . . END=1736015 GT:DP:GQ:MIN_DP:PL 0/0:41:39:33:0,39,826 +chrX 1736016 . G . . END=1736016 GT:DP:GQ:MIN_DP:PL 0/0:37:12:37:0,12,887 +chrX 1736017 . C . . END=1736119 GT:DP:GQ:MIN_DP:PL 0/0:44:33:39:0,33,1047 +chrX 1736120 . A G, 1718.06 . AS_QUALapprox=|1732|0;AS_VarDP=0|52|0;DP=56;QUALapprox=1732;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1732,156,0,1732,156,1732:0,0,22,30 +chrX 1736121 . G . . END=1736279 GT:DP:GQ:MIN_DP:PL 0/0:53:76:53:0,76,1226 +chrX 1736280 . G T, 608.64 . AS_QUALapprox=|616|0;AS_VarDP=21|22|0;BaseQRankSum=0.121;DP=47;MQRankSum=0.000;QUALapprox=616;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=0.766;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:21,22,0:43:99:616,0,564,679,631,1309:14,7,11,11 +chrX 1736281 . T . . END=1736704 GT:DP:GQ:MIN_DP:PL 0/0:48:48:48:0,48,1251 +chrX 1736705 . A G, 477.64 . AS_QUALapprox=|485|0;AS_VarDP=22|18|0;BaseQRankSum=-0.745;DP=41;MQRankSum=-1.055;QUALapprox=485;RAW_GT_COUNT=0,1,0;RAW_MQandDP=145604,41;ReadPosRankSum=0.938;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:22,18,0:40:99:485,0,634,552,689,1240:13,9,6,12 +chrX 1736706 . C . . END=1736841 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,104,1449 +chrX 1736842 . G A, 1032.64 . AS_QUALapprox=|1040|0;AS_VarDP=31|36|0;BaseQRankSum=0.128;DP=70;MQRankSum=-1.689;QUALapprox=1040;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226310,70;ReadPosRankSum=0.107;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:31,36,0:67:99:1040,0,865,1133,973,2106:15,16,18,18 +chrX 1736843 . A . . END=1736925 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 1736926 . G T, 895.64 . AS_QUALapprox=|903|0;AS_VarDP=26|33|0;BaseQRankSum=-0.816;DP=60;MQRankSum=3.634;QUALapprox=903;RAW_GT_COUNT=0,1,0;RAW_MQandDP=156206,60;ReadPosRankSum=-0.703;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:26,33,0:59:99:903,0,981,981,1080,2061:16,10,17,16 +chrX 1736927 . G . . END=1736931 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 1736932 . T C, 656.64 . AS_QUALapprox=|664|0;AS_VarDP=31|25|0;BaseQRankSum=0.652;DP=58;MQRankSum=-3.648;QUALapprox=664;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147710,58;ReadPosRankSum=-0.035;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:31,25,0:56:99:664,0,1205,758,1280,2037:15,16,16,9 +chrX 1736933 . G . . END=1736991 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,114,1594 +chrX 1736992 . A G, 1723.06 . AS_QUALapprox=|1737|0;AS_VarDP=0|53|0;DP=55;QUALapprox=1737;RAW_GT_COUNT=0,0,1;RAW_MQandDP=157885,55;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1737,159,0,1737,159,1737:0,0,24,29 +chrX 1736993 . G . . END=1737045 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1529 +chrX 1737046 . T C, 587.64 . AS_QUALapprox=|595|0;AS_VarDP=25|23|0;BaseQRankSum=-2.022;DP=51;MQRankSum=-1.792;QUALapprox=595;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169915,51;ReadPosRankSum=0.960;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:25,23,0:48:99:595,0,700,670,769,1439:11,14,7,16 +chrX 1737047 . G . . END=1737079 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 1737080 . A AG, 1015.60 . AS_QUALapprox=|1023|0;AS_VarDP=22|31|0;BaseQRankSum=-0.444;DP=55;MQRankSum=0.000;QUALapprox=1023;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-0.379;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:22,31,0:53:99:1023,0,724,1089,816,1905:12,10,14,17 +chrX 1737081 . T . . END=1737176 GT:DP:GQ:MIN_DP:PL 0/0:66:61:66:0,61,1592 +chrX 1737177 . C T, 838.64 . AS_QUALapprox=|846|0;AS_VarDP=33|31|0;BaseQRankSum=0.671;DP=66;MQRankSum=0.000;QUALapprox=846;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=1.955;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:33,31,0:64:99:846,0,865,944,958,1903:18,15,15,16 +chrX 1737178 . T . . END=1737251 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1737252 . A G, 763.64 . AS_QUALapprox=|771|0;AS_VarDP=28|29|0;BaseQRankSum=0.338;DP=60;MQRankSum=0.000;QUALapprox=771;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=-0.926;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:28,29,0:57:99:771,0,742,856,829,1685:16,12,16,13 +chrX 1737253 . T . . END=1737289 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1737290 . G T, 909.64 . AS_QUALapprox=|917|0;AS_VarDP=31|34|0;BaseQRankSum=0.566;DP=69;MQRankSum=0.000;QUALapprox=917;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=0.558;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:31,34,0:65:99:917,0,787,1010,890,1899:19,12,20,14 +chrX 1737291 . C . . END=1737429 GT:DP:GQ:MIN_DP:PL 0/0:78:99:78:0,120,1800 +chrX 1737430 . TTTTTTG T, 661.60 . AS_QUALapprox=|669|0;AS_VarDP=31|19|0;BaseQRankSum=-0.689;DP=66;MQRankSum=0.000;QUALapprox=669;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=0.914;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:31,19,0:50:99:669,0,1220,762,1278,2041:11,20,9,10 +chrX 1737437 . T . . END=1737447 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1737448 . GTT G, 1147.60 . AS_QUALapprox=|1155|0;AS_VarDP=22|30|0;BaseQRankSum=-0.209;DP=60;MQRankSum=0.000;QUALapprox=1155;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212000,60;ReadPosRankSum=-0.176;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:22,30,0:52:99:1155,0,830,1222,920,2142:11,11,10,20 +chrX 1737451 . T . . END=1737464 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 1737465 . GT G, 307.60 . AS_QUALapprox=|315|0;AS_VarDP=23|18|0;BaseQRankSum=-0.439;DP=57;MQRankSum=0.818;QUALapprox=315;RAW_GT_COUNT=0,1,0;RAW_MQandDP=197200,57;ReadPosRankSum=1.262;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:23,18,0:41:99:315,0,422,384,475,859:18,5,4,14 +chrX 1737467 . T . . END=1737497 GT:DP:GQ:MIN_DP:PL 0/0:56:34:42:0,34,1187 +chrX 1737498 . T C, 852.64 . AS_QUALapprox=|860|0;AS_VarDP=15|28|0;BaseQRankSum=-0.711;DP=46;MQRankSum=0.000;QUALapprox=860;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=0.357;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:15,28,0:43:99:860,0,382,905,466,1371:5,10,13,15 +chrX 1737499 . C . . END=1737537 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 1737538 . T C, 2427.06 . AS_QUALapprox=|2441|0;AS_VarDP=0|55|0;DP=58;QUALapprox=2441;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,55,0:55:99:0|1:1737538_T_C:2441,166,0,2441,166,2441:1737538:0,0,20,35 +chrX 1737539 . G . . END=1737547 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 1737548 . T C, 2359.06 . AS_QUALapprox=|2373|0;AS_VarDP=0|53|0;DP=55;QUALapprox=2373;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,53,0:53:99:0|1:1737538_T_C:2373,160,0,2373,160,2373:1737538:0,0,21,32 +chrX 1737549 . C . . END=1737868 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,118,1800 +chrX 1737869 . TC T, 854.60 . AS_QUALapprox=|862|0;AS_VarDP=28|28|0;BaseQRankSum=0.534;DP=63;MQRankSum=0.000;QUALapprox=862;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=-0.369;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:28,28,0:56:99:862,0,872,946,956,1902:11,17,14,14 +chrX 1737871 . C . . END=1737898 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1737899 . T C, 753.64 . AS_QUALapprox=|761|0;AS_VarDP=29|27|0;BaseQRankSum=3.113;DP=57;MQRankSum=0.000;QUALapprox=761;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-1.501;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:29,27,0:56:99:761,0,700,847,781,1629:13,16,11,16 +chrX 1737900 . A . . END=1738162 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1738163 . T C, 523.64 . AS_QUALapprox=|531|0;AS_VarDP=27|21|0;BaseQRankSum=0.732;DP=51;MQRankSum=0.000;QUALapprox=531;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-0.582;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:27,21,0:48:99:531,0,712,612,775,1387:14,13,12,9 +chrX 1738164 . G . . END=1738187 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,105,1575 +chrX 1738188 . C A,CA, 313.60 . AS_QUALapprox=|0|321|0;AS_VarDP=21|1|15|0;BaseQRankSum=1.835;DP=48;MQRankSum=0.000;QUALapprox=321;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=-0.291;VarDP=37 GT:AD:DP:GQ:PL:SB 0/2:21,1,15,0:37:99:321,351,1529,0,546,441,399,1259,565,1216:10,11,11,5 +chrX 1738189 . A . . END=1738252 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,111,1425 +chrX 1738253 . C A, 1842.06 . AS_QUALapprox=|1856|0;AS_VarDP=0|58|0;DP=60;QUALapprox=1856;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=58 GT:AD:DP:GQ:PL:SB 1/1:0,58,0:58:99:1856,173,0,1856,173,1856:0,0,33,25 +chrX 1738254 . A . . END=1738375 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 1738376 . T A, 2173.06 . AS_QUALapprox=|2187|0;AS_VarDP=0|68|0;DP=77;QUALapprox=2187;RAW_GT_COUNT=0,0,1;RAW_MQandDP=277200,77;VarDP=68 GT:AD:DP:GQ:PL:SB 1/1:0,68,0:68:99:2187,204,0,2187,204,2187:0,0,33,35 +chrX 1738377 . T . . END=1738486 GT:DP:GQ:MIN_DP:PL 0/0:73:99:73:0,120,1800 +chrX 1738487 . A G, 2300.06 . AS_QUALapprox=|2314|0;AS_VarDP=0|70|0;DP=71;QUALapprox=2314;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;VarDP=70 GT:AD:DP:GQ:PL:SB 1/1:0,70,0:70:99:2314,210,0,2314,210,2314:0,0,33,37 +chrX 1738488 . G . . END=1738736 GT:DP:GQ:MIN_DP:PL 0/0:54:92:54:0,92,1617 +chrX 1738737 . ATTTTTT A, 514.60 . AS_QUALapprox=|522|0;AS_VarDP=22|14|0;BaseQRankSum=0.070;DP=51;MQRankSum=0.855;QUALapprox=522;RAW_GT_COUNT=0,1,0;RAW_MQandDP=181249,51;ReadPosRankSum=-0.802;VarDP=36 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,14,0:36:99:0|1:1738737_ATTTTTT_A:522,0,863,589,906,1495:1738737:13,9,6,8 +chrX 1738744 . T . . END=1738765 GT:DP:GQ:MIN_DP:PL 0/0:45:62:45:0,62,897 +chrX 1738766 . T C, 371.64 . AS_QUALapprox=|379|0;AS_VarDP=19|18|0;BaseQRankSum=-1.987;DP=39;MQRankSum=0.000;QUALapprox=379;RAW_GT_COUNT=0,1,0;RAW_MQandDP=140049,39;ReadPosRankSum=0.775;VarDP=37 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:19,18,0:37:99:1|0:1738737_ATTTTTT_A:379,0,685,436,737,1174:1738737:9,10,7,11 +chrX 1738767 . G . . END=1738961 GT:DP:GQ:MIN_DP:PL 0/0:48:21:48:0,21,1211 +chrX 1738962 . T C, 1066.64 . AS_QUALapprox=|1074|0;AS_VarDP=22|38|0;BaseQRankSum=-1.283;DP=61;MQRankSum=-0.726;QUALapprox=1074;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219136,61;ReadPosRankSum=0.376;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:22,38,0:60:99:1074,0,573,1140,687,1827:11,11,20,18 +chrX 1738963 . C . . END=1739039 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 1739040 . C T, 538.64 . AS_QUALapprox=|546|0;AS_VarDP=31|22|0;BaseQRankSum=0.931;DP=55;MQRankSum=0.881;QUALapprox=546;RAW_GT_COUNT=0,1,0;RAW_MQandDP=197536,55;ReadPosRankSum=-0.397;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:31,22,0:53:99:546,0,780,639,846,1485:20,11,12,10 +chrX 1739041 . G . . END=1739200 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,116,1457 +chrX 1739201 . A G, 1751.06 . AS_QUALapprox=|1765|0;AS_VarDP=0|59|0;DP=61;QUALapprox=1765;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216433,61;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1765,176,0,1765,176,1765:0,0,35,24 +chrX 1739202 . T . . END=1739244 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 1739245 . TTG T, 356.60 . AS_QUALapprox=|364|0;AS_VarDP=26|18|0;BaseQRankSum=-1.111;DP=60;MQRankSum=-1.156;QUALapprox=364;RAW_GT_COUNT=0,1,0;RAW_MQandDP=215001,60;ReadPosRankSum=1.145;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:26,18,0:44:99:364,0,987,443,1041,1484:18,8,8,10 +chrX 1739248 . TG T, 940.60 . AS_QUALapprox=|948|0;AS_VarDP=31|26|0;BaseQRankSum=0.983;DP=60;MQRankSum=0.951;QUALapprox=948;RAW_GT_COUNT=0,1,0;RAW_MQandDP=215001,60;ReadPosRankSum=-1.029;VarDP=57 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:31,26,0:57:99:0|1:1739248_TG_T:948,0,1156,1041,1234,2275:1739248:15,16,18,8 +chrX 1739250 . TGTGTGTGTGTGTG T, 931.60 . AS_QUALapprox=|939|0;AS_VarDP=34|26|0;BaseQRankSum=1.378;DP=67;MQRankSum=0.908;QUALapprox=939;RAW_GT_COUNT=0,1,0;RAW_MQandDP=240201,67;ReadPosRankSum=-1.012;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:34,26,0:60:99:0|1:1739248_TG_T:939,0,1266,1041,1345,2386:1739248:16,18,18,8 +chrX 1739264 . T . . END=1739631 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 1739632 . G A, 363.64 . AS_QUALapprox=|371|0;AS_VarDP=44|12|0;BaseQRankSum=1.075;DP=58;MQRankSum=-3.913;QUALapprox=371;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201232,58;ReadPosRankSum=-0.204;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:44,12,0:56:99:0|1:1739632_G_A:371,0,1780,504,1816,2320:1739632:19,25,4,8 +chrX 1739633 . T . . END=1739636 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1739637 . T G, 363.64 . AS_QUALapprox=|371|0;AS_VarDP=44|12|0;BaseQRankSum=2.303;DP=57;MQRankSum=-3.913;QUALapprox=371;RAW_GT_COUNT=0,1,0;RAW_MQandDP=197632,57;ReadPosRankSum=-1.166;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:44,12,0:56:99:0|1:1739632_G_A:371,0,1791,504,1827,2331:1739632:19,25,4,8 +chrX 1739638 . C . . END=1739643 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 1739644 . T C, 369.64 . AS_QUALapprox=|377|0;AS_VarDP=42|12|0;BaseQRankSum=2.246;DP=54;MQRankSum=-3.826;QUALapprox=377;RAW_GT_COUNT=0,1,0;RAW_MQandDP=189807,54;ReadPosRankSum=-2.219;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:42,12,0:54:99:0|1:1739632_G_A:377,0,1727,504,1764,2267:1739632:18,24,4,8 +chrX 1739645 . G A, 324.64 . AS_QUALapprox=|332|0;AS_VarDP=43|11|0;BaseQRankSum=2.269;DP=54;MQRankSum=-4.044;QUALapprox=332;RAW_GT_COUNT=0,1,0;RAW_MQandDP=189807,54;ReadPosRankSum=-2.005;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:43,11,0:54:99:0|1:1739632_G_A:332,0,1772,462,1806,2267:1739632:19,24,3,8 +chrX 1739646 . T C, 327.64 . AS_QUALapprox=|335|0;AS_VarDP=42|11|0;BaseQRankSum=1.002;DP=53;MQRankSum=-3.998;QUALapprox=335;RAW_GT_COUNT=0,1,0;RAW_MQandDP=186207,53;ReadPosRankSum=-2.231;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:42,11,0:53:99:0|1:1739632_G_A:335,0,1730,462,1764,2225:1739632:19,23,3,8 +chrX 1739647 . G . . END=1739652 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 1739653 . T G, 240.64 . AS_QUALapprox=|248|0;AS_VarDP=43|9|0;BaseQRankSum=1.305;DP=52;MQRankSum=-4.476;QUALapprox=248;RAW_GT_COUNT=0,1,0;RAW_MQandDP=182607,52;ReadPosRankSum=-2.408;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:43,9,0:52:99:0|1:1739632_G_A:248,0,1778,378,1806,2183:1739632:20,23,3,6 +chrX 1739654 . G . . END=1739654 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 1739655 . G C, 240.64 . AS_QUALapprox=|248|0;AS_VarDP=43|9|0;BaseQRankSum=2.282;DP=52;MQRankSum=-4.476;QUALapprox=248;RAW_GT_COUNT=0,1,0;RAW_MQandDP=182607,52;ReadPosRankSum=-2.747;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:43,9,0:52:99:0|1:1739632_G_A:248,0,1778,378,1806,2183:1739632:20,23,3,6 +chrX 1739656 . T . . END=1739658 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 1739659 . T C, 237.64 . AS_QUALapprox=|245|0;AS_VarDP=44|9|0;BaseQRankSum=1.148;DP=53;MQRankSum=-4.526;QUALapprox=245;RAW_GT_COUNT=0,1,0;RAW_MQandDP=186207,53;ReadPosRankSum=-2.837;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:44,9,0:53:99:0|1:1739632_G_A:245,0,1820,378,1848,2225:1739632:20,24,3,6 +chrX 1739660 . T . . END=1739668 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,120,1800 +chrX 1739669 . C T, 124.64 . AS_QUALapprox=|132|0;AS_VarDP=40|6|0;BaseQRankSum=0.979;DP=46;MQRankSum=-5.306;QUALapprox=132;RAW_GT_COUNT=0,1,0;RAW_MQandDP=161007,46;ReadPosRankSum=-3.017;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:40,6,0:46:99:0|1:1739632_G_A:132,0,1662,252,1680,1932:1739632:19,21,1,5 +chrX 1739670 . G . . END=1739670 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,120,1800 +chrX 1739671 . T C, 82.64 . AS_QUALapprox=|90|0;AS_VarDP=40|5|0;BaseQRankSum=1.456;DP=45;MQRankSum=-4.970;QUALapprox=90;RAW_GT_COUNT=0,1,0;RAW_MQandDP=160278,45;ReadPosRankSum=-3.200;VarDP=45 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:40,5,0:45:90:0|1:1739632_G_A:90,0,1665,210,1680,1890:1739632:19,21,1,4 +chrX 1739672 . C . . END=1739679 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,108,1360 +chrX 1739680 . G T, 46.64 . AS_QUALapprox=|54|0;AS_VarDP=38|4|0;BaseQRankSum=1.354;DP=42;MQRankSum=-5.422;QUALapprox=54;RAW_GT_COUNT=0,1,0;RAW_MQandDP=149478,42;ReadPosRankSum=-3.231;VarDP=42 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:38,4,0:42:54:0|1:1739632_G_A:54,0,1584,168,1596,1764:1739632:18,20,0,4 +chrX 1739681 . T . . END=1739803 GT:DP:GQ:MIN_DP:PL 0/0:38:58:38:0,58,892 +chrX 1739804 . A G, 868.06 . AS_QUALapprox=|882|0;AS_VarDP=0|30|0;DP=30;QUALapprox=882;RAW_GT_COUNT=0,0,1;RAW_MQandDP=102258,30;VarDP=30 GT:AD:DP:GQ:PL:SB 1/1:0,30,0:30:89:882,89,0,882,89,882:0,0,16,14 +chrX 1739805 . A . . END=1739867 GT:DP:GQ:MIN_DP:PL 0/0:34:56:34:0,56,932 +chrX 1739868 . G . . END=1739868 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,1170 +chrX 1739869 . C . . END=1739869 GT:DP:GQ:MIN_DP:PL 0/0:30:84:30:0,84,1260 +chrX 1739870 . C . . END=1739870 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,1170 +chrX 1739871 . A . . END=1739900 GT:DP:GQ:MIN_DP:PL 0/0:30:73:30:0,73,889 +chrX 1739901 . TTGTGTG T, 877.03 . AS_QUALapprox=|891|0;AS_VarDP=0|20|0;DP=32;QUALapprox=891;RAW_GT_COUNT=0,0,1;RAW_MQandDP=107974,32;VarDP=20 GT:AD:DP:GQ:PL:SB 1/1:0,20,0:20:61:891,61,0,891,61,891:0,0,10,10 +chrX 1739908 . T . . END=1739909 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,800 +chrX 1739910 . T . . END=1739912 GT:DP:GQ:MIN_DP:PL 0/0:39:90:39:0,90,1350 +chrX 1739913 . G . . END=1739913 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,933 +chrX 1739914 . T . . END=1739920 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,108,1444 +chrX 1739921 . G . . END=1739921 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,923 +chrX 1739922 . T . . END=1739929 GT:DP:GQ:MIN_DP:PL 0/0:43:57:43:0,57,1281 +chrX 1739930 . T . . END=1739930 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,569 +chrX 1739931 . G . . END=1739942 GT:DP:GQ:MIN_DP:PL 0/0:44:95:44:0,95,1385 +chrX 1739943 . T . . END=1739944 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,530 +chrX 1739945 . C . . END=1739951 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,120,1800 +chrX 1739952 . A . . END=1739952 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,489 +chrX 1739953 . C . . END=1740161 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,112,1702 +chrX 1740162 . C . . END=1740162 GT:DP:GQ:MIN_DP:PL 0/0:55:3:55:0,3,1366 +chrX 1740163 . G . . END=1740232 GT:DP:GQ:MIN_DP:PL 0/0:57:52:57:0,52,1454 +chrX 1740233 . T TTG, 782.60 . AS_QUALapprox=|790|0;AS_VarDP=15|25|0;BaseQRankSum=-2.258;DP=52;MQRankSum=-1.346;QUALapprox=790;RAW_GT_COUNT=0,1,0;RAW_MQandDP=184469,52;ReadPosRankSum=-0.252;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:15,25,0:40:99:790,0,420,836,495,1331:10,5,15,10 +chrX 1740234 . T . . END=1740657 GT:DP:GQ:MIN_DP:PL 0/0:66:63:66:0,63,1563 +chrX 1740658 . A . . END=1740658 GT:DP:GQ:MIN_DP:PL 0/0:59:0:59:0,0,1436 +chrX 1740659 . A . . END=1740793 GT:DP:GQ:MIN_DP:PL 0/0:55:56:55:0,56,1255 +chrX 1740794 . A G, 826.64 . AS_QUALapprox=|834|0;AS_VarDP=26|32|0;BaseQRankSum=-0.923;DP=58;MQRankSum=-0.387;QUALapprox=834;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201890,58;ReadPosRankSum=-0.829;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:26,32,0:58:99:834,0,690,912,786,1698:16,10,15,17 +chrX 1740795 . T . . END=1741476 GT:DP:GQ:MIN_DP:PL 0/0:49:64:47:0,64,903 +chrX 1741477 . A G, 602.64 . AS_QUALapprox=|610|0;AS_VarDP=24|24|0;BaseQRankSum=-1.685;DP=50;MQRankSum=0.000;QUALapprox=610;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=-1.093;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:24,24,0:48:99:610,0,660,682,732,1414:15,9,16,8 +chrX 1741478 . C . . END=1741634 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,106,1443 +chrX 1741635 . C T, 612.64 . AS_QUALapprox=|620|0;AS_VarDP=22|23|0;BaseQRankSum=1.770;DP=47;MQRankSum=0.000;QUALapprox=620;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=-0.398;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:22,23,0:45:99:620,0,529,685,597,1283:6,16,9,14 +chrX 1741636 . G . . END=1741692 GT:DP:GQ:MIN_DP:PL 0/0:38:30:33:0,30,978 +chrX 1741693 . G GAA, 337.60 . AS_QUALapprox=|345|0;AS_VarDP=14|15|0;BaseQRankSum=-1.247;DP=44;MQRankSum=-0.897;QUALapprox=345;RAW_GT_COUNT=0,1,0;RAW_MQandDP=156400,44;ReadPosRankSum=-1.048;VarDP=29 GT:AD:DP:GQ:PL:SB 0/1:14,15,0:29:99:345,0,370,387,414,801:5,9,4,11 +chrX 1741694 . A . . END=1741708 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,114,1614 +chrX 1741709 . G . . END=1741709 GT:DP:GQ:MIN_DP:PL 0/0:50:0:50:0,0,1360 +chrX 1741710 . A . . END=1741978 GT:DP:GQ:MIN_DP:PL 0/0:52:22:47:0,22,1346 +chrX 1741979 . A G, 556.64 . AS_QUALapprox=|564|0;AS_VarDP=35|22|0;BaseQRankSum=1.995;DP=61;MQRankSum=0.000;QUALapprox=564;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-0.787;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:35,22,0:57:99:564,0,871,668,937,1605:18,17,10,12 +chrX 1741980 . T . . END=1742180 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 1742181 . G A, 834.64 . AS_QUALapprox=|842|0;AS_VarDP=37|30|0;BaseQRankSum=3.248;DP=68;MQRankSum=0.000;QUALapprox=842;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=1.684;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:37,30,0:67:99:842,0,959,953,1049,2002:20,17,19,11 +chrX 1742182 . T . . END=1742238 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1742239 . C T, 1161.64 . AS_QUALapprox=|1169|0;AS_VarDP=30|45|0;BaseQRankSum=-0.201;DP=79;MQRankSum=0.000;QUALapprox=1169;RAW_GT_COUNT=0,1,0;RAW_MQandDP=284400,79;ReadPosRankSum=1.422;VarDP=75 GT:AD:DP:GQ:PL:SB 0/1:30,45,0:75:99:1169,0,694,1259,828,2087:17,13,25,20 +chrX 1742240 . T . . END=1742414 GT:DP:GQ:MIN_DP:PL 0/0:74:99:74:0,120,1800 +chrX 1742415 . G A, 601.64 . AS_QUALapprox=|609|0;AS_VarDP=33|24|0;BaseQRankSum=0.459;DP=61;MQRankSum=0.000;QUALapprox=609;RAW_GT_COUNT=0,1,0;RAW_MQandDP=218916,61;ReadPosRankSum=1.528;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:33,24,0:57:99:609,0,876,707,948,1655:18,15,11,13 +chrX 1742416 . C . . END=1742507 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1742508 . T C, 1902.06 . AS_QUALapprox=|1916|0;AS_VarDP=0|57|0;DP=57;QUALapprox=1916;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1916,171,0,1916,171,1916:0,0,30,27 +chrX 1742509 . T . . END=1742678 GT:DP:GQ:MIN_DP:PL 0/0:61:96:61:0,96,1611 +chrX 1742679 . A C, 519.64 . AS_QUALapprox=|527|0;AS_VarDP=32|23|0;BaseQRankSum=-1.738;DP=60;MQRankSum=0.000;QUALapprox=527;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=0.862;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:32,23,0:55:99:527,0,909,623,977,1601:8,24,14,9 +chrX 1742680 . A . . END=1742691 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,112,1519 +chrX 1742692 . G GA, 1119.03 . AS_QUALapprox=|1133|0;AS_VarDP=0|44|0;DP=57;QUALapprox=1133;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=44 GT:AD:DP:GQ:PL:SB 1/1:0,44,0:44:99:1133,130,0,1133,130,1133:0,0,20,24 +chrX 1742693 . A . . END=1743022 GT:DP:GQ:MIN_DP:PL 0/0:63:57:63:0,57,1755 +chrX 1743023 . A G,T, 2356.10 . AS_QUALapprox=|1651|1626|0;AS_VarDP=0|29|28|0;DP=58;QUALapprox=2373;RAW_GT_COUNT=0,0,1;RAW_MQandDP=204800,58;VarDP=57 GT:AD:DP:GQ:PL:SB 1/2:0,29,28,0:57:99:2373,883,722,909,0,747,2121,865,890,2006:0,0,22,35 +chrX 1743024 . G . . END=1743024 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 1743025 . C G, 2529.06 . AS_QUALapprox=|2543|0;AS_VarDP=0|57|0;DP=57;QUALapprox=2543;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201200,57;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:2543,172,0,2543,172,2543:0,0,22,35 +chrX 1743026 . A . . END=1743239 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,117,1800 +chrX 1743240 . G A, 806.64 . AS_QUALapprox=|814|0;AS_VarDP=37|32|0;BaseQRankSum=-0.539;DP=73;MQRankSum=0.000;QUALapprox=814;RAW_GT_COUNT=0,1,0;RAW_MQandDP=262800,73;ReadPosRankSum=-0.656;VarDP=69 GT:AD:DP:GQ:PL:SB 0/1:37,32,0:69:99:814,0,983,925,1080,2005:20,17,22,10 +chrX 1743241 . T . . END=1743504 GT:DP:GQ:MIN_DP:PL 0/0:50:74:50:0,74,1255 +chrX 1743505 . C A, 507.64 . AS_QUALapprox=|515|0;AS_VarDP=23|19|0;BaseQRankSum=0.687;DP=44;MQRankSum=-1.052;QUALapprox=515;RAW_GT_COUNT=0,1,0;RAW_MQandDP=156400,44;ReadPosRankSum=-0.190;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:23,19,0:42:99:515,0,618,583,676,1259:13,10,10,9 +chrX 1743506 . G . . END=1743797 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,102,1380 +chrX 1743798 . CT C, 899.60 . AS_QUALapprox=|907|0;AS_VarDP=32|27|0;BaseQRankSum=0.656;DP=61;MQRankSum=0.000;QUALapprox=907;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=0.031;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:32,27,0:59:99:907,0,1093,1003,1175,2178:23,9,16,11 +chrX 1743800 . G . . END=1743988 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 1743989 . ATT A, 825.60 . AS_QUALapprox=|833|0;AS_VarDP=24|27|0;BaseQRankSum=-1.884;DP=61;MQRankSum=0.000;QUALapprox=833;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=1.626;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:24,27,0:51:99:833,0,715,905,797,1702:14,10,14,13 +chrX 1743992 . T . . END=1744033 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1744034 . G A, 1017.64 . AS_QUALapprox=|1025|0;AS_VarDP=24|39|0;BaseQRankSum=-2.846;DP=64;MQRankSum=0.000;QUALapprox=1025;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=-1.649;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:24,39,0:63:99:1025,0,636,1097,752,1849:16,8,23,16 +chrX 1744035 . T . . END=1744088 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 1744089 . C T, 1098.64 . AS_QUALapprox=|1106|0;AS_VarDP=41|42|0;BaseQRankSum=1.090;DP=85;MQRankSum=0.000;QUALapprox=1106;RAW_GT_COUNT=0,1,0;RAW_MQandDP=306000,85;ReadPosRankSum=1.790;VarDP=83 GT:AD:DP:GQ:PL:SB 0/1:41,42,0:83:99:1106,0,1016,1229,1142,2371:22,19,19,23 +chrX 1744090 . G . . END=1744125 GT:DP:GQ:MIN_DP:PL 0/0:82:99:82:0,120,1800 +chrX 1744126 . T C, 2511.06 . AS_QUALapprox=|2525|0;AS_VarDP=0|79|0;DP=82;QUALapprox=2525;RAW_GT_COUNT=0,0,1;RAW_MQandDP=295200,82;VarDP=79 GT:AD:DP:GQ:PL:SB 1/1:0,79,0:79:99:2525,237,0,2525,237,2525:0,0,38,41 +chrX 1744127 . G . . END=1744212 GT:DP:GQ:MIN_DP:PL 0/0:80:99:80:0,120,1800 +chrX 1744213 . C T, 1091.64 . AS_QUALapprox=|1099|0;AS_VarDP=33|38|0;BaseQRankSum=3.673;DP=75;MQRankSum=0.000;QUALapprox=1099;RAW_GT_COUNT=0,1,0;RAW_MQandDP=270000,75;ReadPosRankSum=-0.427;VarDP=71 GT:AD:DP:GQ:PL:SB 0/1:33,38,0:71:99:1099,0,739,1196,854,2049:11,22,22,16 +chrX 1744214 . C . . END=1744352 GT:DP:GQ:MIN_DP:PL 0/0:80:99:80:0,120,1800 +chrX 1744353 . C T, 1043.64 . AS_QUALapprox=|1051|0;AS_VarDP=35|38|0;BaseQRankSum=1.123;DP=74;MQRankSum=0.000;QUALapprox=1051;RAW_GT_COUNT=0,1,0;RAW_MQandDP=266400,74;ReadPosRankSum=1.353;VarDP=73 GT:AD:DP:GQ:PL:SB 0/1:35,38,0:73:99:1051,0,900,1156,1014,2170:17,18,24,14 +chrX 1744354 . G . . END=1745220 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,108,1464 +chrX 1745221 . T C, 777.64 . AS_QUALapprox=|785|0;AS_VarDP=35|29|0;BaseQRankSum=-0.667;DP=66;MQRankSum=0.000;QUALapprox=785;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=-0.142;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:35,29,0:64:99:785,0,1004,890,1091,1981:20,15,15,14 +chrX 1745222 . G . . END=1745973 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 1745974 . T C, 784.64 . AS_QUALapprox=|792|0;AS_VarDP=33|29|0;BaseQRankSum=-0.152;DP=63;MQRankSum=0.000;QUALapprox=792;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=0.452;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:33,29,0:62:99:792,0,931,891,1018,1909:14,19,11,18 +chrX 1745975 . G . . END=1746505 GT:DP:GQ:MIN_DP:PL 0/0:44:33:39:0,33,1067 +chrX 1746506 . C . . END=1746506 GT:DP:GQ:MIN_DP:PL 0/0:59:8:59:0,8,1502 +chrX 1746507 . A . . END=1746726 GT:DP:GQ:MIN_DP:PL 0/0:58:70:58:0,70,1359 +chrX 1746727 . T . . END=1746727 GT:DP:GQ:MIN_DP:PL 0/0:61:15:61:0,15,1614 +chrX 1746728 . C . . END=1746748 GT:DP:GQ:MIN_DP:PL 0/0:60:91:60:0,91,1543 +chrX 1746749 . C T, 386.64 . AS_QUALapprox=|394|0;AS_VarDP=40|20|0;BaseQRankSum=-1.267;DP=60;MQRankSum=0.000;QUALapprox=394;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=-0.706;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:40,20,0:60:99:394,0,1129,514,1189,1703:21,19,12,8 +chrX 1746750 . C . . END=1747323 GT:DP:GQ:MIN_DP:PL 0/0:59:84:59:0,84,1420 +chrX 1747324 . A G, 1831.06 . AS_QUALapprox=|1845|0;AS_VarDP=0|59|0;DP=63;QUALapprox=1845;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1845,176,0,1845,176,1845:0,0,37,22 +chrX 1747325 . A . . END=1747488 GT:DP:GQ:MIN_DP:PL 0/0:53:38:49:0,38,1316 +chrX 1747489 . T TTTG, 357.60 . AS_QUALapprox=|365|0;AS_VarDP=36|16|0;BaseQRankSum=0.775;DP=54;MQRankSum=-2.113;QUALapprox=365;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190400,54;ReadPosRankSum=-0.902;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:36,16,0:52:99:365,0,1228,472,1275,1748:15,21,9,7 +chrX 1747490 . C . . END=1747490 GT:DP:GQ:MIN_DP:PL 0/0:53:0:53:0,0,1118 +chrX 1747491 . T . . END=1747894 GT:DP:GQ:MIN_DP:PL 0/0:67:78:67:0,78,1228 +chrX 1747895 . G A, 627.64 . AS_QUALapprox=|635|0;AS_VarDP=37|29|0;BaseQRankSum=-1.570;DP=68;MQRankSum=0.000;QUALapprox=635;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=0.039;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:37,29,0:66:99:635,0,1004,746,1089,1835:27,10,16,13 +chrX 1747896 . T . . END=1748038 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1748039 . C T, 756.64 . AS_QUALapprox=|764|0;AS_VarDP=35|28|0;BaseQRankSum=0.902;DP=64;MQRankSum=0.000;QUALapprox=764;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=-0.387;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:35,28,0:63:99:764,0,977,869,1061,1930:16,19,16,12 +chrX 1748040 . T . . END=1748689 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,111,1574 +chrX 1748690 . C T, 523.64 . AS_QUALapprox=|531|0;AS_VarDP=28|20|0;BaseQRankSum=0.770;DP=52;MQRankSum=0.000;QUALapprox=531;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=-0.293;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:28,20,0:48:99:531,0,779,615,839,1454:15,13,11,9 +chrX 1748691 . G . . END=1749569 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,116,1619 +chrX 1749570 . G A, 1793.06 . AS_QUALapprox=|1807|0;AS_VarDP=2|55|0;BaseQRankSum=3.695;DP=58;MQRankSum=0.000;QUALapprox=1807;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;ReadPosRankSum=0.043;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:2,55,0:57:99:1807,151,0,1812,165,1826:1,1,24,31 +chrX 1749571 . A . . END=1750445 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,115,1375 +chrX 1750446 . C A, 729.64 . AS_QUALapprox=|737|0;AS_VarDP=46|31|0;BaseQRankSum=-1.418;DP=77;MQRankSum=0.000;QUALapprox=737;RAW_GT_COUNT=0,1,0;RAW_MQandDP=277200,77;ReadPosRankSum=0.499;VarDP=77 GT:AD:DP:GQ:PL:SB 0/1:46,31,0:77:99:737,0,1294,875,1386,2261:23,23,11,20 +chrX 1750447 . C . . END=1750485 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 1750486 . T C, 1131.64 . AS_QUALapprox=|1139|0;AS_VarDP=27|43|0;BaseQRankSum=-0.106;DP=73;MQRankSum=0.000;QUALapprox=1139;RAW_GT_COUNT=0,1,0;RAW_MQandDP=262800,73;ReadPosRankSum=0.260;VarDP=70 GT:AD:DP:GQ:PL:SB 0/1:27,43,0:70:99:1139,0,648,1220,777,1997:10,17,22,21 +chrX 1750487 . G . . END=1751785 GT:DP:GQ:MIN_DP:PL 0/0:62:94:62:0,94,1245 +chrX 1751786 . A C, 1037.06 . AS_QUALapprox=|1051|0;AS_VarDP=1|35|0;BaseQRankSum=1.838;DP=44;MQRankSum=0.000;QUALapprox=1051;RAW_GT_COUNT=0,0,1;RAW_MQandDP=153716,44;ReadPosRankSum=0.000;VarDP=36 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:1,35,0:36:96:0|1:1751786_A_C:1051,96,0,1053,103,1060:1751786:0,1,17,18 +chrX 1751787 . A . . END=1751806 GT:DP:GQ:MIN_DP:PL 0/0:38:90:38:0,90,1087 +chrX 1751807 . C A, 0.03 . AS_QUALapprox=|2|0;AS_VarDP=39|5|0;BaseQRankSum=-0.224;DP=51;MQRankSum=-2.962;QUALapprox=2;RAW_GT_COUNT=0,1,0;RAW_MQandDP=175229,51;ReadPosRankSum=1.516;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:39,5,0:44:2:1|0:1751786_A_C:2,0,1450,119,1465,1584:1751786:18,21,0,5 +chrX 1751808 . A . . END=1752055 GT:DP:GQ:MIN_DP:PL 0/0:47:77:47:0,77,1281 +chrX 1752056 . C T, 431.64 . AS_QUALapprox=|439|0;AS_VarDP=29|18|0;BaseQRankSum=-0.319;DP=49;MQRankSum=0.000;QUALapprox=439;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=-0.701;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:29,18,0:47:99:439,0,826,526,880,1405:13,16,4,14 +chrX 1752057 . T . . END=1752638 GT:DP:GQ:MIN_DP:PL 0/0:46:77:46:0,77,1251 +chrX 1752639 . G C, 781.64 . AS_QUALapprox=|789|0;AS_VarDP=26|30|0;BaseQRankSum=-2.057;DP=58;MQRankSum=0.000;QUALapprox=789;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-0.740;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:26,30,0:56:99:789,0,726,867,816,1683:13,13,18,12 +chrX 1752640 . G . . END=1753500 GT:DP:GQ:MIN_DP:PL 0/0:57:69:57:0,69,1259 +chrX 1753501 . C T, 699.64 . AS_QUALapprox=|707|0;AS_VarDP=19|25|0;BaseQRankSum=0.438;DP=48;MQRankSum=0.000;QUALapprox=707;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=1.730;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:19,25,0:44:99:707,0,481,764,556,1320:9,10,10,15 +chrX 1753502 . A . . END=1753612 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1704 +chrX 1753613 . A G, 641.64 . AS_QUALapprox=|649|0;AS_VarDP=29|26|0;BaseQRankSum=-0.293;DP=55;MQRankSum=0.000;QUALapprox=649;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-1.788;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:29,26,0:55:99:649,0,769,736,846,1582:18,11,13,13 +chrX 1753614 . T . . END=1753790 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,104,1503 +chrX 1753791 . A G, 731.64 . AS_QUALapprox=|739|0;AS_VarDP=33|27|0;BaseQRankSum=0.961;DP=60;MQRankSum=0.000;QUALapprox=739;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=0.052;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:33,27,0:60:99:739,0,900,837,981,1818:18,15,11,16 +chrX 1753792 . G . . END=1753974 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 1753975 . C T, 930.64 . AS_QUALapprox=|938|0;AS_VarDP=19|34|0;BaseQRankSum=-2.084;DP=53;MQRankSum=0.000;QUALapprox=938;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=0.547;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:19,34,0:53:99:938,0,502,995,603,1598:12,7,20,14 +chrX 1753976 . T . . END=1754183 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1754184 . T C, 1101.64 . AS_QUALapprox=|1109|0;AS_VarDP=22|39|0;BaseQRankSum=1.504;DP=65;MQRankSum=0.000;QUALapprox=1109;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=1.623;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:22,39,0:61:99:1109,0,487,1174,604,1778:10,12,21,18 +chrX 1754185 . A . . END=1754244 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,112,1800 +chrX 1754245 . C . . END=1754281 GT:DP:GQ:MIN_DP:PL 0/0:64:0:64:0,0,1503 +chrX 1754282 . G A, 432.64 . AS_QUALapprox=|440|0;AS_VarDP=34|18|0;BaseQRankSum=0.146;DP=59;MQRankSum=0.000;QUALapprox=440;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=1.963;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:34,18,0:52:99:440,0,951,581,1075,1910:15,19,8,10 +chrX 1754283 . C . . END=1754315 GT:DP:GQ:MIN_DP:PL 0/0:58:0:58:0,0,1404 +chrX 1754316 . A . . END=1754556 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,101,1468 +chrX 1754557 . C G, 1822.06 . AS_QUALapprox=|1836|0;AS_VarDP=0|56|0;DP=61;QUALapprox=1836;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1836,167,0,1836,167,1836:0,0,25,31 +chrX 1754558 . A . . END=1754772 GT:DP:GQ:MIN_DP:PL 0/0:57:88:57:0,88,1276 +chrX 1754773 . G A, 445.64 . AS_QUALapprox=|453|0;AS_VarDP=26|18|0;BaseQRankSum=0.891;DP=46;MQRankSum=0.000;QUALapprox=453;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=-0.967;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:26,18,0:44:99:453,0,681,532,735,1267:14,12,7,11 +chrX 1754774 . T . . END=1754820 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,102,1261 +chrX 1754821 . T C, 1221.06 . AS_QUALapprox=|1235|0;AS_VarDP=0|38|0;DP=44;QUALapprox=1235;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158400,44;VarDP=38 GT:AD:DP:GQ:PL:SB 1/1:0,38,0:38:99:1235,114,0,1235,114,1235:0,0,20,18 +chrX 1754822 . G . . END=1755828 GT:DP:GQ:MIN_DP:PL 0/0:60:77:60:0,77,1084 +chrX 1755829 . A G, 932.64 . AS_QUALapprox=|940|0;AS_VarDP=23|34|0;BaseQRankSum=-0.286;DP=58;MQRankSum=0.000;QUALapprox=940;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=0.350;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:23,34,0:57:99:940,0,588,1010,690,1700:14,9,13,21 +chrX 1755830 . C . . END=1756549 GT:DP:GQ:MIN_DP:PL 0/0:59:50:59:0,50,923 +chrX 1756550 . A G, 1518.06 . AS_QUALapprox=|1532|0;AS_VarDP=0|47|0;DP=48;QUALapprox=1532;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172336,48;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1532,141,0,1532,141,1532:0,0,23,24 +chrX 1756551 . T . . END=1756840 GT:DP:GQ:MIN_DP:PL 0/0:59:93:59:0,93,1359 +chrX 1756841 . A AAAAT, 983.60 . AS_QUALapprox=|991|0;AS_VarDP=24|26|0;BaseQRankSum=0.828;DP=65;MQRankSum=0.000;QUALapprox=991;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=-1.447;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:24,26,0:50:99:991,0,909,1064,988,2052:8,16,11,15 +chrX 1756842 . A . . END=1757342 GT:DP:GQ:MIN_DP:PL 0/0:64:63:64:0,63,1334 +chrX 1757343 . CA C, 1216.03 . AS_QUALapprox=|1230|0;AS_VarDP=0|41|0;DP=47;QUALapprox=1230;RAW_GT_COUNT=0,0,1;RAW_MQandDP=168516,47;VarDP=41 GT:AD:DP:GQ:PL:SB 1/1:0,41,0:41:99:1230,123,0,1230,123,1230:0,0,22,19 +chrX 1757345 . A . . END=1757497 GT:DP:GQ:MIN_DP:PL 0/0:44:35:43:0,35,1120 +chrX 1757498 . T . . END=1757500 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,762 +chrX 1757501 . C CAA,CAAAA, 1245.02 . AS_QUALapprox=|883|967|0;AS_VarDP=0|13|16|0;DP=54;QUALapprox=1262;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190400,54;VarDP=29 GT:AD:DP:GQ:PL:SB 1/2:0,13,16,0:29:99:1262,491,379,374,0,295,1077,481,371,1012:0,0,15,14 +chrX 1757502 . A . . END=1758012 GT:DP:GQ:MIN_DP:PL 0/0:61:94:61:0,94,1271 +chrX 1758013 . T C, 1168.64 . AS_QUALapprox=|1176|0;AS_VarDP=16|42|0;BaseQRankSum=-0.013;DP=61;MQRankSum=0.000;QUALapprox=1176;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=0.888;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:16,42,0:58:99:1176,0,338,1224,463,1687:10,6,18,24 +chrX 1758014 . C . . END=1758111 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,99,1619 +chrX 1758112 . A G, 1648.06 . AS_QUALapprox=|1662|0;AS_VarDP=0|50|0;DP=52;QUALapprox=1662;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1662,150,0,1662,150,1662:0,0,31,19 +chrX 1758113 . G . . END=1759412 GT:DP:GQ:MIN_DP:PL 0/0:57:72:57:0,72,1419 +chrX 1759413 . A G, 1989.06 . AS_QUALapprox=|2003|0;AS_VarDP=0|63|0;DP=65;QUALapprox=2003;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=63 GT:AD:DP:GQ:PL:SB 1/1:0,63,0:63:99:2003,189,0,2003,189,2003:0,0,31,32 +chrX 1759414 . A . . END=1759495 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 1759496 . A G, 1976.06 . AS_QUALapprox=|1990|0;AS_VarDP=2|63|0;BaseQRankSum=2.941;DP=66;MQRankSum=0.000;QUALapprox=1990;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;ReadPosRankSum=0.114;VarDP=65 GT:AD:DP:GQ:PL:SB 1/1:2,63,0:65:99:1990,144,0,1996,188,2039:1,1,39,24 +chrX 1759497 . C . . END=1760078 GT:DP:GQ:MIN_DP:PL 0/0:61:62:61:0,62,868 +chrX 1760079 . T TTCCC, 290.60 . AS_QUALapprox=|298|0;AS_VarDP=16|9|0;BaseQRankSum=-0.579;DP=34;MQRankSum=-1.250;QUALapprox=298;RAW_GT_COUNT=0,1,0;RAW_MQandDP=119700,34;ReadPosRankSum=1.389;VarDP=25 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:16,9,0:25:99:0|1:1760079_T_TTCCC:298,0,645,347,672,1019:1760079:5,11,2,7 +chrX 1760080 . T . . END=1760086 GT:DP:GQ:MIN_DP:PL 0/0:32:81:32:0,81,1033 +chrX 1760087 . CTCCCTCCT C,TTCCCTCCT, 285.64 . AS_QUALapprox=|0|293|0;AS_VarDP=16|0|9|0;BaseQRankSum=0.286;DP=35;MQRankSum=-0.421;QUALapprox=293;RAW_GT_COUNT=0,1,0;RAW_MQandDP=121636,35;ReadPosRankSum=0.819;VarDP=25 GT:AD:DP:GQ:PL:SB 0/2:16,0,9,0:25:99:293,368,1393,0,696,729,373,1314,761,1361:4,12,2,7 +chrX 1760091 . C *,T, 288.64 . AS_QUALapprox=|0|296|0;AS_VarDP=15|0|9|0;BaseQRankSum=-0.044;DP=32;MQRankSum=-1.205;QUALapprox=296;RAW_GT_COUNT=0,1,0;RAW_MQandDP=112500,32;ReadPosRankSum=0.567;VarDP=24 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|2:15,0,9,0:24:99:0|1:1760079_T_TTCCC:296,362,1261,0,648,687,367,1182,713,1229:1760079:3,12,2,7 +chrX 1760095 . T *,C, 285.64 . AS_QUALapprox=|0|293|0;AS_VarDP=16|0|9|0;BaseQRankSum=-1.181;DP=32;MQRankSum=-0.421;QUALapprox=293;RAW_GT_COUNT=0,1,0;RAW_MQandDP=110836,32;ReadPosRankSum=0.716;VarDP=25 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|2:16,0,9,0:25:99:0|1:1760079_T_TTCCC:293,359,1258,0,687,729,364,1179,752,1226:1760079:4,12,2,7 +chrX 1760096 . T . . END=1760125 GT:DP:GQ:MIN_DP:PL 0/0:31:72:31:0,72,1080 +chrX 1760126 . C T,CTTCT,CTTCCTTCCTTCT, 1250.06 . AS_QUALapprox=|615|531|697|0;AS_VarDP=0|15|0|3|0;DP=35;QUALapprox=1267;RAW_GT_COUNT=0,0,1;RAW_MQandDP=120101,35;VarDP=18 GT:AD:DP:GQ:PL:SB 1/3:0,15,0,3,0:18:99:1267,652,793,736,267,852,618,0,590,570,1279,813,894,630,1437:0,0,5,13 +chrX 1760127 . T . . END=1760129 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +chrX 1760130 . CTTCCTTCT C, 556.60 . AS_QUALapprox=|564|0;AS_VarDP=22|15|0;BaseQRankSum=1.529;DP=37;MQRankSum=-0.915;QUALapprox=564;RAW_GT_COUNT=0,1,0;RAW_MQandDP=127301,37;ReadPosRankSum=0.217;VarDP=37 GT:AD:DP:GQ:PL:SB 0/1:22,15,0:37:99:564,0,865,630,910,1540:9,13,5,10 +chrX 1760139 . T . . END=1760199 GT:DP:GQ:MIN_DP:PL 0/0:37:73:37:0,73,1013 +chrX 1760200 . CTT C, 478.60 . AS_QUALapprox=|486|0;AS_VarDP=23|14|0;BaseQRankSum=1.186;DP=39;MQRankSum=0.000;QUALapprox=486;RAW_GT_COUNT=0,1,0;RAW_MQandDP=140400,39;ReadPosRankSum=-1.072;VarDP=37 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,14,0:37:99:0|1:1760200_CTT_C:486,0,913,555,955,1511:1760200:11,12,6,8 +chrX 1760203 . T . . END=1760209 GT:DP:GQ:MIN_DP:PL 0/0:35:91:35:0,91,1148 +chrX 1760210 . CTT C, 445.60 . AS_QUALapprox=|453|0;AS_VarDP=24|13|0;BaseQRankSum=0.172;DP=38;MQRankSum=0.000;QUALapprox=453;RAW_GT_COUNT=0,1,0;RAW_MQandDP=136800,38;ReadPosRankSum=-0.626;VarDP=37 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,13,0:37:99:0|1:1760200_CTT_C:453,0,948,525,987,1512:1760200:13,11,6,7 +chrX 1760213 . T . . END=1760221 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,105,1176 +chrX 1760222 . C T,CTCTT, 1626.06 . AS_QUALapprox=|714|1253|0;AS_VarDP=0|11|22|0;DP=43;QUALapprox=1643;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154800,43;VarDP=33 GT:AD:DP:GQ:PL:SB 1/2:0,11,22,0:33:99:1643,929,953,477,0,390,1531,972,483,1546:0,0,17,16 +chrX 1760223 . T . . END=1760298 GT:DP:GQ:MIN_DP:PL 0/0:54:52:54:0,52,1423 +chrX 1760299 . C T, 915.64 . AS_QUALapprox=|923|0;AS_VarDP=30|25|0;BaseQRankSum=0.175;DP=57;MQRankSum=0.000;QUALapprox=923;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=0.913;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:30,25,0:55:99:0|1:1760299_C_T:923,0,1148,1013,1223,2236:1760299:18,12,13,12 +chrX 1760300 . C . . END=1760301 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 1760302 . A G, 884.64 . AS_QUALapprox=|892|0;AS_VarDP=30|24|0;BaseQRankSum=0.859;DP=57;MQRankSum=0.000;QUALapprox=892;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=0.723;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:30,24,0:54:99:0|1:1760299_C_T:892,0,1151,982,1223,2205:1760299:18,12,12,12 +chrX 1760303 . C . . END=1760378 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1760379 . C T, 370.64 . AS_QUALapprox=|378|0;AS_VarDP=40|16|0;BaseQRankSum=1.106;DP=58;MQRankSum=0.000;QUALapprox=378;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-0.980;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:40,16,0:56:99:378,0,1135,498,1183,1681:23,17,13,3 +chrX 1760380 . T . . END=1761405 GT:DP:GQ:MIN_DP:PL 0/0:64:56:59:0,56,1410 +chrX 1761406 . AT A,ATT, 1658.03 . AS_QUALapprox=|1672|0|0;AS_VarDP=0|59|1|0;DP=71;QUALapprox=1672;RAW_GT_COUNT=0,0,1;RAW_MQandDP=254601,71;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,59,1,0:60:99:1672,170,0,1797,142,2216,1779,174,2037,1963:0,0,32,28 +chrX 1761408 . T . . END=1761504 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 1761505 . G A, 909.64 . AS_QUALapprox=|917|0;AS_VarDP=33|33|0;BaseQRankSum=1.871;DP=67;MQRankSum=1.030;QUALapprox=917;RAW_GT_COUNT=0,1,0;RAW_MQandDP=239809,67;ReadPosRankSum=0.488;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:33,33,0:66:99:917,0,740,1014,839,1852:18,15,13,20 +chrX 1761506 . A . . END=1761565 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 1761566 . G GT, 582.60 . AS_QUALapprox=|590|0;AS_VarDP=18|26|0;BaseQRankSum=-0.782;DP=54;MQRankSum=0.455;QUALapprox=590;RAW_GT_COUNT=0,1,0;RAW_MQandDP=188947,54;ReadPosRankSum=-1.087;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:18,26,0:44:99:590,0,376,644,454,1098:8,10,14,12 +chrX 1761567 . T . . END=1761646 GT:DP:GQ:MIN_DP:PL 0/0:48:70:48:0,70,1211 +chrX 1761647 . T . . END=1761647 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,1138 +chrX 1761648 . C . . END=1761722 GT:DP:GQ:MIN_DP:PL 0/0:40:20:38:0,20,1002 +chrX 1761723 . A . . END=1761723 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,1211 +chrX 1761724 . A . . END=1761788 GT:DP:GQ:MIN_DP:PL 0/0:50:22:47:0,22,1256 +chrX 1761789 . C T, 767.64 . AS_QUALapprox=|775|0;AS_VarDP=29|29|0;BaseQRankSum=0.309;DP=65;MQRankSum=0.000;QUALapprox=775;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=0.529;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:29,29,0:58:99:775,0,784,863,871,1733:10,19,13,16 +chrX 1761790 . C . . END=1762129 GT:DP:GQ:MIN_DP:PL 0/0:63:91:63:0,91,1733 +chrX 1762130 . C CG, 1012.60 . AS_QUALapprox=|1020|0;AS_VarDP=31|30|0;BaseQRankSum=-0.160;DP=63;MQRankSum=-0.984;QUALapprox=1020;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226225,63;ReadPosRankSum=-0.188;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:31,30,0:61:99:1020,0,1025,1113,1115,2229:17,14,12,18 +chrX 1762131 . C . . END=1762254 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1762255 . T C, 845.64 . AS_QUALapprox=|853|0;AS_VarDP=39|32|0;BaseQRankSum=1.671;DP=73;MQRankSum=-1.076;QUALapprox=853;RAW_GT_COUNT=0,1,0;RAW_MQandDP=262225,73;ReadPosRankSum=0.381;VarDP=71 GT:AD:DP:GQ:PL:SB 0/1:39,32,0:71:99:853,0,1039,970,1135,2105:23,16,24,8 +chrX 1762256 . T . . END=1762431 GT:DP:GQ:MIN_DP:PL 0/0:74:77:74:0,77,1615 +chrX 1762432 . CTTT C, 81.60 . AS_QUALapprox=|89|0;AS_VarDP=18|4|0;BaseQRankSum=-2.095;DP=54;MQRankSum=0.589;QUALapprox=89;RAW_GT_COUNT=0,1,0;RAW_MQandDP=188113,54;ReadPosRankSum=0.585;VarDP=22 GT:AD:DP:GQ:PL:SB 0/1:18,4,0:22:89:89,0,660,144,672,815:4,14,1,3 +chrX 1762436 . T . . END=1762451 GT:DP:GQ:MIN_DP:PL 0/0:48:63:48:0,63,945 +chrX 1762452 . TTTTTTTTTG T, 662.60 . AS_QUALapprox=|670|0;AS_VarDP=25|20|0;BaseQRankSum=1.107;DP=58;MQRankSum=-1.073;QUALapprox=670;RAW_GT_COUNT=0,1,0;RAW_MQandDP=202513,58;ReadPosRankSum=0.015;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:25,20,0:45:99:670,0,837,745,898,1643:16,9,4,16 +chrX 1762462 . G . . END=1762531 GT:DP:GQ:MIN_DP:PL 0/0:41:78:41:0,78,1232 +chrX 1762532 . A G, 1573.06 . AS_QUALapprox=|1587|0;AS_VarDP=0|50|0;DP=52;QUALapprox=1587;RAW_GT_COUNT=0,0,1;RAW_MQandDP=186516,52;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1587,149,0,1587,149,1587:0,0,22,28 +chrX 1762533 . T . . END=1762855 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 1762856 . G C, 756.64 . AS_QUALapprox=|764|0;AS_VarDP=33|30|0;BaseQRankSum=-1.559;DP=65;MQRankSum=0.000;QUALapprox=764;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=-0.833;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:33,30,0:63:99:764,0,909,862,998,1860:22,11,13,17 +chrX 1762857 . G . . END=1762936 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1762937 . T TATTA, 909.60 . AS_QUALapprox=|917|0;AS_VarDP=30|24|0;BaseQRankSum=-1.014;DP=59;MQRankSum=0.000;QUALapprox=917;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-1.237;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:30,24,0:54:99:917,0,1188,1008,1260,2268:16,14,11,13 +chrX 1762938 . A . . END=1763140 GT:DP:GQ:MIN_DP:PL 0/0:56:89:56:0,89,1400 +chrX 1763141 . C T, 686.64 . AS_QUALapprox=|694|0;AS_VarDP=20|25|0;BaseQRankSum=-1.048;DP=46;MQRankSum=0.000;QUALapprox=694;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=1.611;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:20,25,0:45:99:694,0,534,754,609,1363:5,15,8,17 +chrX 1763142 . A . . END=1763479 GT:DP:GQ:MIN_DP:PL 0/0:57:73:57:0,73,1553 +chrX 1763480 . C T, 1090.64 . AS_QUALapprox=|1098|0;AS_VarDP=27|39|0;BaseQRankSum=0.073;DP=66;MQRankSum=0.000;QUALapprox=1098;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=0.163;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:27,39,0:66:99:1098,0,671,1178,788,1966:17,10,20,19 +chrX 1763481 . C . . END=1763582 GT:DP:GQ:MIN_DP:PL 0/0:57:57:46:0,57,844 +chrX 1763583 . C A,*, 864.04 . AS_QUALapprox=|1810|0|0;AS_VarDP=0|19|0|0;DP=46;QUALapprox=1810;RAW_GT_COUNT=0,0,1;RAW_MQandDP=146688,46;VarDP=19 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,19,0,0:19:57:1|0:1763582_CCTG_C:1810,133,0,851,57,844,1804,133,891,1830:1763582:0,0,12,7 +chrX 1763584 . T . . END=1763598 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,102,1530 +chrX 1763599 . C T, 53.04 . AS_QUALapprox=|744|0;AS_VarDP=19|20|0;BaseQRankSum=-1.875;DP=40;MQRankSum=-1.985;QUALapprox=744;RAW_GT_COUNT=0,1,0;RAW_MQandDP=122388,40;ReadPosRankSum=0.000;VarDP=39 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:19,20,0:39:99:0|1:1763599_C_T:744,0,738,778,798,1570:1763599:12,7,0,1 +chrX 1763600 . T G,*, 53.04 . AS_QUALapprox=|744|0|0;AS_VarDP=0|0|0|0;BaseQRankSum=-1.742;DP=40;MQRankSum=-1.985;QUALapprox=744;RAW_GT_COUNT=0,1,0;RAW_MQandDP=122388,40;ReadPosRankSum=0.173;VarDP=20 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:19,1,0,0:20:33:0|1:1763599_C_T:744,0,738,33,741,771,778,798,830,1570:1763599:12,7,0,1 +chrX 1763601 . G . . END=1763601 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +chrX 1763602 . CCACGGCTGCCTTGAAGGTTGTGAAATTGCTCACGGCTGCCTTGAAGGTTGTGAAATTGCT C,TCACGGCTGCCTTGAAGGTTGTGAAATTGCTCACGGCTGCCTTGAAGGTTGTGAAATTGCT, 62.07 . AS_QUALapprox=|0|693|0;AS_VarDP=11|0|19|0;BaseQRankSum=-0.524;DP=45;MQRankSum=0.290;QUALapprox=693;RAW_GT_COUNT=0,1,0;RAW_MQandDP=121565,45;ReadPosRankSum=0.524;VarDP=30 GT:AD:DP:GQ:PL:SB 0/2:11,0,19,0:30:99:693,726,1152,0,411,1013,771,1201,1074,1863:3,8,0,1 +chrX 1763655 . A C,*, 124.04 . AS_QUALapprox=|376|0|0;AS_VarDP=14|4|0|0;BaseQRankSum=-0.608;DP=25;MQRankSum=1.225;QUALapprox=376;RAW_GT_COUNT=0,1,0;RAW_MQandDP=52825,25;ReadPosRankSum=2.497;VarDP=18 GT:AD:DP:GQ:PL:SB 0/1:14,4,0,0:18:99:376,0,555,104,567,700,406,588,709,1006:5,9,2,2 +chrX 1763663 . C . . END=1763744 GT:DP:GQ:MIN_DP:PL 0/0:18:27:12:0,27,405 +chrX 1763745 . A . . END=1763745 GT:DP:GQ:MIN_DP:PL 0/0:9:0:9:0,0,174 +chrX 1763746 . A . . END=1763763 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,243 +chrX 1763764 . T . . END=1763857 GT:DP:GQ:MIN_DP:PL 0/0:6:0:6:0,0,0 +chrX 1763858 . G . . END=1763858 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,243 +chrX 1763859 . G . . END=1763930 GT:DP:GQ:MIN_DP:PL 0/0:6:0:6:0,0,139 +chrX 1763931 . C G, 99.65 . AS_QUALapprox=|107|0;AS_VarDP=1|4|0;BaseQRankSum=0.000;DP=5;MQRankSum=0.000;QUALapprox=107;RAW_GT_COUNT=0,1,0;RAW_MQandDP=4022,5;ReadPosRankSum=-1.282;VarDP=5 GT:AD:DP:GQ:PL:SB 0/1:1,4,0:5:15:107,0,15,110,27,137:0,1,0,4 +chrX 1763932 . T . . END=1764673 GT:DP:GQ:MIN_DP:PL 0/0:0:0:0:0,0,0 +chrX 1764674 . G . . END=1764674 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,243 +chrX 1764675 . A . . END=1764675 GT:DP:GQ:MIN_DP:PL 0/0:7:0:7:0,0,174 +chrX 1764676 . A . . END=1764703 GT:DP:GQ:MIN_DP:PL 0/0:9:21:8:0,21,243 +chrX 1764704 . G . . END=1764705 GT:DP:GQ:MIN_DP:PL 0/0:10:0:10:0,0,223 +chrX 1764706 . A . . END=1764710 GT:DP:GQ:MIN_DP:PL 0/0:10:30:10:0,30,327 +chrX 1764711 . C . . END=1764711 GT:DP:GQ:MIN_DP:PL 0/0:10:0:10:0,0,199 +chrX 1764712 . T . . END=1764712 GT:DP:GQ:MIN_DP:PL 0/0:11:33:11:0,33,372 +chrX 1764713 . C . . END=1764713 GT:DP:GQ:MIN_DP:PL 0/0:11:19:11:0,19,333 +chrX 1764714 . A . . END=1764734 GT:DP:GQ:MIN_DP:PL 0/0:11:27:9:0,27,303 +chrX 1764735 . A . . END=1764735 GT:DP:GQ:MIN_DP:PL 0/0:12:11:12:0,11,337 +chrX 1764736 . A . . END=1764737 GT:DP:GQ:MIN_DP:PL 0/0:12:30:12:0,30,352 +chrX 1764738 . T . . END=1764738 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,272 +chrX 1764739 . T . . END=1764750 GT:DP:GQ:MIN_DP:PL 0/0:12:21:11:0,21,318 +chrX 1764751 . C . . END=1764751 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,209 +chrX 1764752 . C . . END=1764759 GT:DP:GQ:MIN_DP:PL 0/0:10:27:10:0,27,272 +chrX 1764760 . T . . END=1764760 GT:DP:GQ:MIN_DP:PL 0/0:10:15:10:0,15,238 +chrX 1764761 . T . . END=1764762 GT:DP:GQ:MIN_DP:PL 0/0:10:24:10:0,24,360 +chrX 1764763 . T . . END=1764763 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,293 +chrX 1764764 . G . . END=1764767 GT:DP:GQ:MIN_DP:PL 0/0:10:27:10:0,27,405 +chrX 1764768 . T . . END=1764768 GT:DP:GQ:MIN_DP:PL 0/0:10:0:10:0,0,139 +chrX 1764769 . T . . END=1764770 GT:DP:GQ:MIN_DP:PL 0/0:10:27:10:0,27,405 +chrX 1764771 . G . . END=1764771 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,178 +chrX 1764772 . T . . END=1764782 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,238 +chrX 1764783 . T . . END=1764784 GT:DP:GQ:MIN_DP:PL 0/0:10:0:10:0,0,233 +chrX 1764785 . G . . END=1764788 GT:DP:GQ:MIN_DP:PL 0/0:9:27:9:0,27,262 +chrX 1764789 . G . . END=1764790 GT:DP:GQ:MIN_DP:PL 0/0:9:2:9:0,2,202 +chrX 1764791 . T . . END=1764796 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,268 +chrX 1764797 . A . . END=1764843 GT:DP:GQ:MIN_DP:PL 0/0:5:0:5:0,0,25 +chrX 1764844 . T . . END=1764884 GT:DP:GQ:MIN_DP:PL 0/0:19:21:8:0,21,223 +chrX 1764885 . C . . END=1764885 GT:DP:GQ:MIN_DP:PL 0/0:20:0:20:0,0,436 +chrX 1764886 . A . . END=1764890 GT:DP:GQ:MIN_DP:PL 0/0:20:51:20:0,51,571 +chrX 1764891 . C . . END=1764891 GT:DP:GQ:MIN_DP:PL 0/0:21:0:21:0,0,451 +chrX 1764892 . T . . END=1764912 GT:DP:GQ:MIN_DP:PL 0/0:25:61:25:0,61,684 +chrX 1764913 . C . . END=1764913 GT:DP:GQ:MIN_DP:PL 0/0:24:0:24:0,0,377 +chrX 1764914 . G . . END=1765062 GT:DP:GQ:MIN_DP:PL 0/0:28:29:26:0,29,600 +chrX 1765063 . C . . END=1765063 GT:DP:GQ:MIN_DP:PL 0/0:38:15:38:0,15,972 +chrX 1765064 . G . . END=1765252 GT:DP:GQ:MIN_DP:PL 0/0:69:49:69:0,49,1225 +chrX 1765253 . G A, 2121.06 . AS_QUALapprox=|2135|0;AS_VarDP=0|64|0;DP=65;QUALapprox=2135;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=64 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:2135,192,0,2135,192,2135:0,0,28,36 +chrX 1765254 . T . . END=1765473 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 1765474 . G T, 1035.64 . AS_QUALapprox=|1043|0;AS_VarDP=24|37|0;BaseQRankSum=-0.384;DP=63;MQRankSum=0.000;QUALapprox=1043;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=-1.514;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:24,37,0:61:99:1043,0,621,1115,732,1847:10,14,22,15 +chrX 1765475 . G . . END=1765525 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 1765526 . T G, 2230.06 . AS_QUALapprox=|2244|0;AS_VarDP=0|72|0;DP=74;QUALapprox=2244;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;VarDP=72 GT:AD:DP:GQ:PL:SB 1/1:0,72,0:72:99:2244,215,0,2244,215,2244:0,0,32,40 +chrX 1765527 . G . . END=1765685 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 1765686 . A G, 499.64 . AS_QUALapprox=|507|0;AS_VarDP=39|22|0;BaseQRankSum=-0.854;DP=67;MQRankSum=0.000;QUALapprox=507;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=0.496;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:39,22,0:61:99:507,0,1088,624,1153,1777:23,16,14,8 +chrX 1765687 . A . . END=1765810 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 1765811 . T . . END=1765811 GT:DP:GQ:MIN_DP:PL 0/0:64:14:64:0,14,1697 +chrX 1765812 . T . . END=1765901 GT:DP:GQ:MIN_DP:PL 0/0:61:86:61:0,86,1641 +chrX 1765902 . G A, 561.64 . AS_QUALapprox=|569|0;AS_VarDP=25|22|0;BaseQRankSum=1.793;DP=49;MQRankSum=0.000;QUALapprox=569;RAW_GT_COUNT=0,1,0;RAW_MQandDP=174400,49;ReadPosRankSum=0.725;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:25,22,0:47:99:569,0,603,644,669,1313:12,13,7,15 +chrX 1765903 . G . . END=1766001 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,106,1463 +chrX 1766002 . C CA, 449.60 . AS_QUALapprox=|457|0;AS_VarDP=19|18|0;BaseQRankSum=0.321;DP=44;MQRankSum=0.000;QUALapprox=457;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=0.030;VarDP=37 GT:AD:DP:GQ:PL:SB 0/1:19,18,0:37:99:457,0,495,514,549,1063:10,9,10,8 +chrX 1766003 . A . . END=1766153 GT:DP:GQ:MIN_DP:PL 0/0:56:27:48:0,27,1264 +chrX 1766154 . CGCAAAACAAAAGCAAA C, 897.60 . AS_QUALapprox=|905|0;AS_VarDP=21|23|0;BaseQRankSum=1.933;DP=55;MQRankSum=1.092;QUALapprox=905;RAW_GT_COUNT=0,1,0;RAW_MQandDP=191988,55;ReadPosRankSum=0.809;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,23,0:44:99:0|1:1766154_CGCAAAACAAAAGCAAA_C:905,0,799,968,871,1839:1766154:11,10,11,12 +chrX 1766155 . G *,T, 559.04 . AS_QUALapprox=|0|758|0;AS_VarDP=0|23|18|0;DP=52;QUALapprox=1669;RAW_GT_COUNT=0,0,1;RAW_MQandDP=181188,52;VarDP=41 GT:AD:DP:GQ:PL:SB 1/2:0,23,18,0:41:99:1669,569,715,982,0,911,1626,719,985,1734:0,0,20,21 +chrX 1766171 . A T, 901.64 . AS_QUALapprox=|909|0;AS_VarDP=19|23|0;BaseQRankSum=1.914;DP=43;MQRankSum=0.000;QUALapprox=909;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154800,43;ReadPosRankSum=1.163;VarDP=42 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:19,23,0:42:99:0|1:1766154_CGCAAAACAAAAGCAAA_C:909,0,729,966,798,1764:1766154:10,9,11,12 +chrX 1766172 . C . . END=1766181 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,102,1361 +chrX 1766182 . A G, 434.64 . AS_QUALapprox=|442|0;AS_VarDP=25|17|0;BaseQRankSum=0.443;DP=46;MQRankSum=0.000;QUALapprox=442;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=-0.013;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:25,17,0:42:99:442,0,970,517,1021,1538:12,13,11,6 +chrX 1766183 . A . . END=1766465 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,101,1470 +chrX 1766466 . T C, 801.64 . AS_QUALapprox=|809|0;AS_VarDP=24|29|0;BaseQRankSum=-1.164;DP=54;MQRankSum=0.000;QUALapprox=809;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=-0.393;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:24,29,0:53:99:809,0,665,881,752,1633:11,13,15,14 +chrX 1766467 . G . . END=1766677 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 1766678 . G A, 1137.64 . AS_QUALapprox=|1145|0;AS_VarDP=35|40|0;BaseQRankSum=1.028;DP=75;MQRankSum=0.000;QUALapprox=1145;RAW_GT_COUNT=0,1,0;RAW_MQandDP=270000,75;ReadPosRankSum=0.244;VarDP=75 GT:AD:DP:GQ:PL:SB 0/1:35,40,0:75:99:1145,0,951,1250,1071,2322:18,17,22,18 +chrX 1766679 . C . . END=1766995 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 1766996 . A G, 895.64 . AS_QUALapprox=|903|0;AS_VarDP=23|34|0;BaseQRankSum=-0.446;DP=59;MQRankSum=0.000;QUALapprox=903;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-0.976;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:23,34,0:57:99:903,0,579,972,680,1652:15,8,17,17 +chrX 1766997 . G . . END=1767509 GT:DP:GQ:MIN_DP:PL 0/0:67:98:67:0,98,1494 +chrX 1767510 . T A, 1594.06 . AS_QUALapprox=|1608|0;AS_VarDP=0|48|0;DP=50;QUALapprox=1608;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=48 GT:AD:DP:GQ:PL:SB 1/1:0,48,0:48:99:1608,144,0,1608,144,1608:0,0,29,19 +chrX 1767511 . G . . END=1767782 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,114,1443 +chrX 1767783 . G A, 440.64 . AS_QUALapprox=|448|0;AS_VarDP=24|17|0;BaseQRankSum=-0.335;DP=44;MQRankSum=1.241;QUALapprox=448;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154400,44;ReadPosRankSum=1.722;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:24,17,0:41:99:448,0,689,520,740,1260:10,14,7,10 +chrX 1767784 . A . . END=1767812 GT:DP:GQ:MIN_DP:PL 0/0:35:84:35:0,84,1197 +chrX 1767813 . A G, 993.06 . AS_QUALapprox=|1007|0;AS_VarDP=0|31|0;DP=33;QUALapprox=1007;RAW_GT_COUNT=0,0,1;RAW_MQandDP=110100,33;VarDP=31 GT:AD:DP:GQ:PL:SB 1/1:0,31,0:31:92:1007,92,0,1007,92,1007:0,0,15,16 +chrX 1767814 . A . . END=1767841 GT:DP:GQ:MIN_DP:PL 0/0:29:63:29:0,63,939 +chrX 1767842 . C T, 299.64 . AS_QUALapprox=|307|0;AS_VarDP=14|11|0;BaseQRankSum=1.339;DP=25;MQRankSum=-1.331;QUALapprox=307;RAW_GT_COUNT=0,1,0;RAW_MQandDP=81300,25;ReadPosRankSum=1.534;VarDP=25 GT:AD:DP:GQ:PL:SB 0/1:14,11,0:25:99:307,0,391,349,424,773:9,5,7,4 +chrX 1767843 . G . . END=1767862 GT:DP:GQ:MIN_DP:PL 0/0:24:37:24:0,37,755 +chrX 1767863 . C CAA,CAAA, 798.02 . AS_QUALapprox=|619|721|0;AS_VarDP=0|8|14|0;DP=37;QUALapprox=815;RAW_GT_COUNT=0,0,1;RAW_MQandDP=120500,37;VarDP=22 GT:AD:DP:GQ:PL:SB 1/2:0,8,14,0:22:94:815,273,196,169,0,94,647,267,162,585:0,0,15,7 +chrX 1767864 . A . . END=1767913 GT:DP:GQ:MIN_DP:PL 0/0:41:44:41:0,44,1125 +chrX 1767914 . T . . END=1767914 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,1127 +chrX 1767915 . A . . END=1768516 GT:DP:GQ:MIN_DP:PL 0/0:52:89:52:0,89,1261 +chrX 1768517 . A T, 857.64 . AS_QUALapprox=|865|0;AS_VarDP=16|22|0;BaseQRankSum=-1.679;DP=44;MQRankSum=0.000;QUALapprox=865;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=-0.031;VarDP=38 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:16,22,0:38:99:0|1:1768517_A_T:865,0,581,913,647,1560:1768517:10,6,10,12 +chrX 1768518 . T C, 857.64 . AS_QUALapprox=|865|0;AS_VarDP=16|22|0;BaseQRankSum=-0.062;DP=45;MQRankSum=0.000;QUALapprox=865;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=0.252;VarDP=38 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:16,22,0:38:99:0|1:1768517_A_T:865,0,581,913,647,1560:1768517:10,6,10,12 +chrX 1768519 . C . . END=1768551 GT:DP:GQ:MIN_DP:PL 0/0:35:72:35:0,72,1047 +chrX 1768552 . T TTC, 1200.03 . AS_QUALapprox=|1214|0;AS_VarDP=0|32|0;DP=42;QUALapprox=1214;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151200,42;VarDP=32 GT:AD:DP:GQ:PL:SB 1/1:0,32,0:32:96:1214,96,0,1214,96,1214:0,0,23,9 +chrX 1768553 . T . . END=1768618 GT:DP:GQ:MIN_DP:PL 0/0:43:87:43:0,87,1152 +chrX 1768619 . T C, 769.64 . AS_QUALapprox=|777|0;AS_VarDP=20|29|0;BaseQRankSum=-0.210;DP=50;MQRankSum=0.000;QUALapprox=777;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=-0.977;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:20,29,0:49:99:777,0,479,836,566,1402:11,9,15,14 +chrX 1768620 . G . . END=1768729 GT:DP:GQ:MIN_DP:PL 0/0:51:82:51:0,82,1430 +chrX 1768730 . ATTATT A, 746.60 . AS_QUALapprox=|754|0;AS_VarDP=18|20|0;BaseQRankSum=0.290;DP=51;MQRankSum=0.000;QUALapprox=754;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-0.784;VarDP=38 GT:AD:DP:GQ:PL:SB 0/1:18,20,0:38:99:754,0,675,808,735,1543:11,7,9,11 +chrX 1768736 . T . . END=1768759 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,115,1530 +chrX 1768760 . C A, 495.64 . AS_QUALapprox=|503|0;AS_VarDP=30|22|0;BaseQRankSum=-1.608;DP=53;MQRankSum=0.000;QUALapprox=503;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=-0.303;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:30,22,0:52:99:503,0,1053,593,1118,1711:18,12,14,8 +chrX 1768761 . T . . END=1768824 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1768825 . G A, 1376.64 . AS_QUALapprox=|1384|0;AS_VarDP=25|36|0;BaseQRankSum=0.476;DP=61;MQRankSum=0.000;QUALapprox=1384;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-0.750;VarDP=61 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,36,0:61:99:0|1:1768825_G_A:1384,0,931,1460,1039,2499:1768825:15,10,17,19 +chrX 1768826 . G . . END=1768833 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1768834 . T C, 1421.64 . AS_QUALapprox=|1429|0;AS_VarDP=28|38|0;BaseQRankSum=-2.832;DP=66;MQRankSum=0.000;QUALapprox=1429;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=-0.480;VarDP=66 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,38,0:66:99:0|1:1768825_G_A:1429,0,1010,1513,1124,2637:1768825:16,12,16,22 +chrX 1768835 . G . . END=1769039 GT:DP:GQ:MIN_DP:PL 0/0:48:21:46:0,21,1211 +chrX 1769040 . A . . END=1769040 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,858 +chrX 1769041 . C . . END=1769043 GT:DP:GQ:MIN_DP:PL 0/0:47:97:47:0,97,1309 +chrX 1769044 . T . . END=1769044 GT:DP:GQ:MIN_DP:PL 0/0:41:15:41:0,15,1087 +chrX 1769045 . T . . END=1769087 GT:DP:GQ:MIN_DP:PL 0/0:36:39:36:0,39,1027 +chrX 1769088 . A C, 729.64 . AS_QUALapprox=|737|0;AS_VarDP=16|19|0;BaseQRankSum=0.000;DP=35;MQRankSum=0.000;QUALapprox=737;RAW_GT_COUNT=0,1,0;RAW_MQandDP=126000,35;ReadPosRankSum=-1.145;VarDP=35 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:16,19,0:35:99:0|1:1769088_A_C:737,0,604,785,661,1446:1769088:7,9,6,13 +chrX 1769089 . A . . END=1769091 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1147 +chrX 1769092 . T C, 699.64 . AS_QUALapprox=|707|0;AS_VarDP=16|18|0;BaseQRankSum=0.127;DP=35;MQRankSum=0.000;QUALapprox=707;RAW_GT_COUNT=0,1,0;RAW_MQandDP=126000,35;ReadPosRankSum=-0.449;VarDP=34 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:16,18,0:34:99:0|1:1769088_A_C:707,0,607,755,661,1416:1769088:7,9,6,12 +chrX 1769093 . T . . END=1769294 GT:DP:GQ:MIN_DP:PL 0/0:57:87:57:0,87,1256 +chrX 1769295 . T . . END=1769295 GT:DP:GQ:MIN_DP:PL 0/0:58:0:58:0,0,1529 +chrX 1769296 . TTTATGCTGCTATAAGAAATACCTGAGTACCTGAGAC T, 471.60 . AS_QUALapprox=|479|0;AS_VarDP=27|18|0;BaseQRankSum=0.360;DP=67;MQRankSum=0.000;QUALapprox=479;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=0.214;VarDP=45 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,18,0:45:99:0|1:1769296_TTTATGCTGCTATAAGAAATACCTGAGTACCTGAGAC_T:479,0,1071,561,1134,1694:1769296:16,11,5,13 +chrX 1769298 . T *,C, 698.04 . AS_QUALapprox=|0|1058|0;AS_VarDP=0|18|20|0;DP=57;QUALapprox=1711;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=38 GT:AD:DP:GQ:PL:SB 1/2:0,18,20,0:38:99:1711,708,818,653,0,685,1563,828,735,1670:0,0,18,20 +chrX 1769333 . T . . END=1769334 GT:DP:GQ:MIN_DP:PL 0/0:65:0:65:0,0,0 +chrX 1769335 . AGGTATTTCT A,*, 626.94 . AS_QUALapprox=|651|0|0;AS_VarDP=29|18|0|0;BaseQRankSum=0.328;DP=49;MQRankSum=0.000;QUALapprox=651;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=-0.383;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,18,0,0:47:99:0|1:1769296_TTTATGCTGCTATAAGAAATACCTGAGTACCTGAGAC_T:651,0,1142,598,1202,1792,679,1201,1807,1863:1769296:17,12,5,13 +chrX 1769345 . T . . END=1769345 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,114,1710 +chrX 1769346 . G . . END=1769348 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,1097 +chrX 1769349 . G . . END=1769349 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,111,1665 +chrX 1769350 . C . . END=1769351 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,1156 +chrX 1769352 . A . . END=1769352 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,117,1755 +chrX 1769353 . T . . END=1769353 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,1195 +chrX 1769354 . A . . END=1769354 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,120,1800 +chrX 1769355 . A . . END=1769355 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,1216 +chrX 1769356 . G . . END=1769356 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,120,1800 +chrX 1769357 . A . . END=1769360 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,1235 +chrX 1769361 . A . . END=1769361 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,120,1800 +chrX 1769362 . C . . END=1769362 GT:DP:GQ:MIN_DP:PL 0/0:49:8:49:0,8,1415 +chrX 1769363 . C . . END=1769363 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 1769364 . T . . END=1769364 GT:DP:GQ:MIN_DP:PL 0/0:49:8:49:0,8,1385 +chrX 1769365 . G . . END=1769694 GT:DP:GQ:MIN_DP:PL 0/0:47:35:43:0,35,1266 +chrX 1769695 . A G, 624.64 . AS_QUALapprox=|632|0;AS_VarDP=30|27|0;BaseQRankSum=-2.935;DP=59;MQRankSum=0.000;QUALapprox=632;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=2.006;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:30,27,0:57:99:632,0,839,722,920,1642:19,11,14,13 +chrX 1769696 . G . . END=1769728 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 1769729 . T C, 836.64 . AS_QUALapprox=|844|0;AS_VarDP=31|33|0;BaseQRankSum=0.169;DP=69;MQRankSum=0.000;QUALapprox=844;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=-0.081;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:31,33,0:64:99:844,0,774,936,873,1809:17,14,20,13 +chrX 1769730 . T . . END=1769850 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1769851 . C CA, 694.60 . AS_QUALapprox=|702|0;AS_VarDP=26|32|0;BaseQRankSum=-0.112;DP=64;MQRankSum=0.000;QUALapprox=702;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=0.727;VarDP=58 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,32,0:58:99:0|1:1769851_C_CA:702,0,654,779,749,1529:1769851:11,15,13,19 +chrX 1769852 . A . . END=1769852 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1769853 . A AC, 636.60 . AS_QUALapprox=|644|0;AS_VarDP=35|26|0;BaseQRankSum=-0.255;DP=64;MQRankSum=0.000;QUALapprox=644;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=-0.379;VarDP=61 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:35,26,0:61:99:1|0:1769851_C_CA:644,0,993,749,1071,1820:1769851:14,21,11,15 +chrX 1769854 . A . . END=1770301 GT:DP:GQ:MIN_DP:PL 0/0:59:63:59:0,63,1654 +chrX 1770302 . C T, 574.64 . AS_QUALapprox=|582|0;AS_VarDP=27|22|0;BaseQRankSum=1.476;DP=51;MQRankSum=0.000;QUALapprox=582;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=0.402;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:27,22,0:49:99:582,0,692,663,758,1420:15,12,10,12 +chrX 1770303 . A . . END=1770363 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,117,1755 +chrX 1770364 . C T, 873.64 . AS_QUALapprox=|881|0;AS_VarDP=21|31|0;BaseQRankSum=1.135;DP=54;MQRankSum=0.000;QUALapprox=881;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=0.121;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:21,31,0:52:99:881,0,493,943,587,1530:9,12,14,17 +chrX 1770365 . G . . END=1770995 GT:DP:GQ:MIN_DP:PL 0/0:59:90:59:0,90,1498 +chrX 1770996 . AT A,ATTTTTTTTT, 483.11 . AS_QUALapprox=|486|18|0;AS_VarDP=0|26|4|0;DP=53;QUALapprox=500;RAW_GT_COUNT=0,0,1;RAW_MQandDP=188800,53;VarDP=30 GT:AD:DP:GQ:PL:SB 1/2:0,26,4,0:30:14:500,63,14,482,0,932,555,83,745,770:0,0,12,18 +chrX 1770998 . T . . END=1771044 GT:DP:GQ:MIN_DP:PL 0/0:47:35:42:0,35,1192 +chrX 1771045 . C . . END=1771046 GT:DP:GQ:MIN_DP:PL 0/0:44:4:44:0,4,1082 +chrX 1771047 . C . . END=1771048 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,104,1334 +chrX 1771049 . A . . END=1771049 GT:DP:GQ:MIN_DP:PL 0/0:42:19:42:0,19,1125 +chrX 1771050 . T . . END=1771053 GT:DP:GQ:MIN_DP:PL 0/0:42:39:41:0,39,1166 +chrX 1771054 . G . . END=1771054 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,996 +chrX 1771055 . T . . END=1772330 GT:DP:GQ:MIN_DP:PL 0/0:56:50:56:0,50,1113 +chrX 1772331 . C T, 1713.06 . AS_QUALapprox=|1727|0;AS_VarDP=0|52|0;DP=54;QUALapprox=1727;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1727,155,0,1727,155,1727:0,0,21,31 +chrX 1772332 . G . . END=1772411 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,99,1310 +chrX 1772412 . C T, 1589.06 . AS_QUALapprox=|1603|0;AS_VarDP=0|48|0;DP=50;QUALapprox=1603;RAW_GT_COUNT=0,0,1;RAW_MQandDP=179536,50;VarDP=48 GT:AD:DP:GQ:PL:SB 1/1:0,48,0:48:99:1603,144,0,1603,144,1603:0,0,27,21 +chrX 1772413 . C . . END=1772456 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 1772457 . T C, 1787.06 . AS_QUALapprox=|1801|0;AS_VarDP=0|56|0;DP=60;QUALapprox=1801;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1801,168,0,1801,168,1801:0,0,27,29 +chrX 1772458 . G . . END=1772493 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 1772494 . A G, 1847.06 . AS_QUALapprox=|1861|0;AS_VarDP=0|60|0;DP=61;QUALapprox=1861;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:1861,179,0,1861,179,1861:0,0,31,29 +chrX 1772495 . G . . END=1772732 GT:DP:GQ:MIN_DP:PL 0/0:55:62:55:0,62,958 +chrX 1772733 . C CA, 689.03 . AS_QUALapprox=|703|0;AS_VarDP=0|28|0;DP=36;QUALapprox=703;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129600,36;VarDP=28 GT:AD:DP:GQ:PL:SB 1/1:0,28,0:28:83:703,83,0,703,83,703:0,0,13,15 +chrX 1772734 . A . . END=1773112 GT:DP:GQ:MIN_DP:PL 0/0:48:48:48:0,48,1047 +chrX 1773113 . T . . END=1773113 GT:DP:GQ:MIN_DP:PL 0/0:57:0:57:0,0,0 +chrX 1773114 . G . . END=1773146 GT:DP:GQ:MIN_DP:PL 0/0:51:45:51:0,45,675 +chrX 1773147 . C . . END=1773312 GT:DP:GQ:MIN_DP:PL 0/0:13:0:13:0,0,0 +chrX 1773313 . T . . END=1773313 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,243 +chrX 1773314 . T . . END=1773314 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,0 +chrX 1773315 . T . . END=1773315 GT:DP:GQ:MIN_DP:PL 0/0:8:24:8:0,24,278 +chrX 1773316 . C . . END=1773317 GT:DP:GQ:MIN_DP:PL 0/0:9:0:9:0,0,0 +chrX 1773318 . T . . END=1773318 GT:DP:GQ:MIN_DP:PL 0/0:9:27:9:0,27,313 +chrX 1773319 . T . . END=1773322 GT:DP:GQ:MIN_DP:PL 0/0:9:0:9:0,0,0 +chrX 1773323 . T . . END=1773323 GT:DP:GQ:MIN_DP:PL 0/0:9:27:9:0,27,313 +chrX 1773324 . C . . END=1773328 GT:DP:GQ:MIN_DP:PL 0/0:10:0:10:0,0,0 +chrX 1773329 . T . . END=1773329 GT:DP:GQ:MIN_DP:PL 0/0:11:33:11:0,33,382 +chrX 1773330 . T . . END=1773330 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,0 +chrX 1773331 . T . . END=1773331 GT:DP:GQ:MIN_DP:PL 0/0:11:33:11:0,33,382 +chrX 1773332 . C . . END=1773334 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,0 +chrX 1773335 . T . . END=1773335 GT:DP:GQ:MIN_DP:PL 0/0:14:42:14:0,42,487 +chrX 1773336 . C . . END=1773340 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,0 +chrX 1773341 . T . . END=1773341 GT:DP:GQ:MIN_DP:PL 0/0:18:54:18:0,54,616 +chrX 1773342 . T . . END=1773342 GT:DP:GQ:MIN_DP:PL 0/0:19:0:19:0,0,0 +chrX 1773343 . T . . END=1773343 GT:DP:GQ:MIN_DP:PL 0/0:20:35:20:0,35,636 +chrX 1773344 . C . . END=1773344 GT:DP:GQ:MIN_DP:PL 0/0:19:0:19:0,0,0 +chrX 1773345 . T . . END=1773347 GT:DP:GQ:MIN_DP:PL 0/0:21:63:21:0,63,720 +chrX 1773348 . C . . END=1773348 GT:DP:GQ:MIN_DP:PL 0/0:22:0:22:0,0,0 +chrX 1773349 . T . . END=1773349 GT:DP:GQ:MIN_DP:PL 0/0:22:66:22:0,66,755 +chrX 1773350 . T . . END=1773356 GT:DP:GQ:MIN_DP:PL 0/0:23:0:23:0,0,0 +chrX 1773357 . T . . END=1773357 GT:DP:GQ:MIN_DP:PL 0/0:23:69:23:0,69,790 +chrX 1773358 . T . . END=1773359 GT:DP:GQ:MIN_DP:PL 0/0:23:0:23:0,0,0 +chrX 1773360 . T . . END=1773360 GT:DP:GQ:MIN_DP:PL 0/0:23:69:23:0,69,790 +chrX 1773361 . C . . END=1773361 GT:DP:GQ:MIN_DP:PL 0/0:24:0:24:0,0,0 +chrX 1773362 . T . . END=1773362 GT:DP:GQ:MIN_DP:PL 0/0:25:75:25:0,75,869 +chrX 1773363 . T . . END=1773363 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,0 +chrX 1773364 . T . . END=1773365 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,1023 +chrX 1773366 . C . . END=1773367 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,0 +chrX 1773368 . T . . END=1773382 GT:DP:GQ:MIN_DP:PL 0/0:33:67:33:0,67,1067 +chrX 1773383 . C . . END=1773383 GT:DP:GQ:MIN_DP:PL 0/0:34:3:34:0,3,45 +chrX 1773384 . T . . END=1773389 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,111,1226 +chrX 1773390 . C . . END=1773390 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,0 +chrX 1773391 . G . . END=1773452 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,115,1366 +chrX 1773453 . T C, 1589.06 . AS_QUALapprox=|1603|0;AS_VarDP=0|49|0;DP=51;QUALapprox=1603;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180418,51;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1603,147,0,1603,147,1603:0,0,22,27 +chrX 1773454 . G . . END=1774154 GT:DP:GQ:MIN_DP:PL 0/0:53:97:53:0,97,1306 +chrX 1774155 . C T, 1816.06 . AS_QUALapprox=|1830|0;AS_VarDP=0|56|0;DP=60;QUALapprox=1830;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1830,168,0,1830,168,1830:0,0,29,27 +chrX 1774156 . G . . END=1774195 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 1774196 . C T, 2080.06 . AS_QUALapprox=|2094|0;AS_VarDP=0|64|0;DP=66;QUALapprox=2094;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=64 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:2094,192,0,2094,192,2094:0,0,37,27 +chrX 1774197 . G . . END=1774321 GT:DP:GQ:MIN_DP:PL 0/0:57:96:57:0,96,1632 +chrX 1774322 . T G, 1575.06 . AS_QUALapprox=|1589|0;AS_VarDP=0|51|0;DP=54;QUALapprox=1589;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1589,152,0,1589,152,1589:0,0,34,17 +chrX 1774323 . G . . END=1774578 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,116,1662 +chrX 1774579 . GACCCCTGAGTTACAGC G, 2960.03 . AS_QUALapprox=|2974|0;AS_VarDP=0|66|0;DP=75;QUALapprox=2974;RAW_GT_COUNT=0,0,1;RAW_MQandDP=270000,75;VarDP=66 GT:AD:DP:GQ:PL:SB 1/1:0,66,0:66:99:2974,201,0,2974,201,2974:0,0,32,34 +chrX 1774596 . A . . END=1775074 GT:DP:GQ:MIN_DP:PL 0/0:69:69:69:0,69,1187 +chrX 1775075 . CTTTTTTT C, 796.86 . AS_QUALapprox=|804|0;AS_VarDP=4|21|0;BaseQRankSum=-1.141;DP=51;MQRankSum=-0.327;QUALapprox=804;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180581,51;ReadPosRankSum=-0.890;VarDP=25 GT:AD:DP:GQ:PL:SB 0/1:4,21,0:25:2:804,0,2,816,67,883:4,0,5,16 +chrX 1775083 . T . . END=1775095 GT:DP:GQ:MIN_DP:PL 0/0:60:69:60:0,69,1035 +chrX 1775096 . T . . END=1775105 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,501 +chrX 1775106 . A . . END=1775223 GT:DP:GQ:MIN_DP:PL 0/0:54:56:54:0,56,1200 +chrX 1775224 . G A, 2184.06 . AS_QUALapprox=|2198|0;AS_VarDP=0|69|0;DP=69;QUALapprox=2198;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=69 GT:AD:DP:GQ:PL:SB 1/1:0,69,0:69:99:2198,206,0,2198,206,2198:0,0,31,38 +chrX 1775225 . C . . END=1775456 GT:DP:GQ:MIN_DP:PL 0/0:54:63:54:0,63,1390 +chrX 1775457 . C T, 1426.06 . AS_QUALapprox=|1440|0;AS_VarDP=0|42|0;DP=44;QUALapprox=1440;RAW_GT_COUNT=0,0,1;RAW_MQandDP=157009,44;VarDP=42 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,42,0:42:99:0|1:1775457_C_T:1440,126,0,1440,126,1440:1775457:0,0,20,22 +chrX 1775458 . T . . END=1775670 GT:DP:GQ:MIN_DP:PL 0/0:43:46:40:0,46,1041 +chrX 1775671 . G C, 1633.06 . AS_QUALapprox=|1647|0;AS_VarDP=0|52|0;DP=54;QUALapprox=1647;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194049,54;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1647,155,0,1647,155,1647:0,0,26,26 +chrX 1775672 . A . . END=1775804 GT:DP:GQ:MIN_DP:PL 0/0:66:80:66:0,80,1679 +chrX 1775805 . CT C, 648.60 . AS_QUALapprox=|656|0;AS_VarDP=21|29|0;BaseQRankSum=-0.063;DP=62;MQRankSum=0.000;QUALapprox=656;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=0.010;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:21,29,0:50:99:656,0,403,719,490,1209:10,11,15,14 +chrX 1775807 . T . . END=1775969 GT:DP:GQ:MIN_DP:PL 0/0:57:54:57:0,54,1300 +chrX 1775970 . ATT A, 638.60 . AS_QUALapprox=|646|0;AS_VarDP=5|25|0;BaseQRankSum=-0.897;DP=48;MQRankSum=1.838;QUALapprox=646;RAW_GT_COUNT=0,1,0;RAW_MQandDP=164101,48;ReadPosRankSum=-0.835;VarDP=30 GT:AD:DP:GQ:PL:SB 0/1:5,25,0:30:61:646,0,61,661,134,795:5,0,7,18 +chrX 1775973 . T . . END=1776030 GT:DP:GQ:MIN_DP:PL 0/0:41:52:36:0,52,1031 +chrX 1776031 . C T, 1810.06 . AS_QUALapprox=|1824|0;AS_VarDP=0|41|0;DP=42;QUALapprox=1824;RAW_GT_COUNT=0,0,1;RAW_MQandDP=144852,42;VarDP=41 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,41,0:41:99:0|1:1776031_C_T:1824,123,0,1824,123,1824:1776031:0,0,19,22 +chrX 1776032 . G . . END=1776043 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,103,1270 +chrX 1776044 . C A, 1786.06 . AS_QUALapprox=|1800|0;AS_VarDP=0|40|0;DP=41;QUALapprox=1800;RAW_GT_COUNT=0,0,1;RAW_MQandDP=143252,41;VarDP=40 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,40,0:40:99:0|1:1776031_C_T:1800,120,0,1800,120,1800:1776031:0,0,19,21 +chrX 1776045 . T . . END=1776068 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,114,1271 +chrX 1776069 . C T, 1830.06 . AS_QUALapprox=|1844|0;AS_VarDP=0|41|0;DP=42;QUALapprox=1844;RAW_GT_COUNT=0,0,1;RAW_MQandDP=148516,42;VarDP=41 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,41,0:41:99:0|1:1776031_C_T:1844,123,0,1844,123,1844:1776031:0,0,20,21 +chrX 1776070 . C G, 1830.06 . AS_QUALapprox=|1844|0;AS_VarDP=0|41|0;DP=42;QUALapprox=1844;RAW_GT_COUNT=0,0,1;RAW_MQandDP=148516,42;VarDP=41 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,41,0:41:99:0|1:1776031_C_T:1844,123,0,1844,123,1844:1776031:0,0,20,21 +chrX 1776071 . G . . END=1777271 GT:DP:GQ:MIN_DP:PL 0/0:61:78:61:0,78,1345 +chrX 1777272 . T C, 2423.06 . AS_QUALapprox=|2437|0;AS_VarDP=0|56|0;DP=59;QUALapprox=2437;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,56,0:56:99:0|1:1777272_T_C:2437,169,0,2437,169,2437:1777272:0,0,20,36 +chrX 1777273 . C . . END=1777280 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 1777281 . A G, 2344.06 . AS_QUALapprox=|2358|0;AS_VarDP=0|54|0;DP=58;QUALapprox=2358;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,54,0:54:99:0|1:1777272_T_C:2358,163,0,2358,163,2358:1777272:0,0,20,34 +chrX 1777282 . T . . END=1777430 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,106,1673 +chrX 1777431 . G A, 1817.06 . AS_QUALapprox=|1831|0;AS_VarDP=0|56|0;DP=58;QUALapprox=1831;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1831,168,0,1831,168,1831:0,0,35,21 +chrX 1777432 . C . . END=1777538 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1777539 . G A, 1563.06 . AS_QUALapprox=|1577|0;AS_VarDP=0|50|0;DP=51;QUALapprox=1577;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1577,149,0,1577,149,1577:0,0,23,27 +chrX 1777540 . A . . END=1777620 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 1777621 . AAGTC A, 2159.03 . AS_QUALapprox=|2173|0;AS_VarDP=0|49|0;DP=51;QUALapprox=2173;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:2173,148,0,2173,148,2173:0,0,29,20 +chrX 1777626 . A . . END=1777720 GT:DP:GQ:MIN_DP:PL 0/0:57:97:57:0,97,1568 +chrX 1777721 . G C, 1891.06 . AS_QUALapprox=|1905|0;AS_VarDP=0|57|0;DP=60;QUALapprox=1905;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1905,171,0,1905,171,1905:0,0,32,25 +chrX 1777722 . A . . END=1778545 GT:DP:GQ:MIN_DP:PL 0/0:56:69:56:0,69,1349 +chrX 1778546 . T C, 1807.06 . AS_QUALapprox=|1821|0;AS_VarDP=0|56|0;DP=59;QUALapprox=1821;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1821,168,0,1821,168,1821:0,0,30,26 +chrX 1778547 . T . . END=1779434 GT:DP:GQ:MIN_DP:PL 0/0:55:86:55:0,86,1311 +chrX 1779435 . G T, 2138.06 . AS_QUALapprox=|2152|0;AS_VarDP=0|68|0;DP=69;QUALapprox=2152;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=68 GT:AD:DP:GQ:PL:SB 1/1:0,68,0:68:99:2152,203,0,2152,203,2152:0,0,32,36 +chrX 1779436 . A . . END=1779449 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 1779450 . C A, 2200.06 . AS_QUALapprox=|2214|0;AS_VarDP=0|65|0;DP=67;QUALapprox=2214;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=65 GT:AD:DP:GQ:PL:SB 1/1:0,65,0:65:99:2214,195,0,2214,195,2214:0,0,32,33 +chrX 1779451 . C . . END=1779481 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 1779482 . C G, 1791.06 . AS_QUALapprox=|1805|0;AS_VarDP=0|57|0;DP=58;QUALapprox=1805;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1805,170,0,1805,170,1805:0,0,31,26 +chrX 1779483 . T . . END=1779554 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,99,1474 +chrX 1779555 . C T, 1773.06 . AS_QUALapprox=|1787|0;AS_VarDP=0|53|0;DP=55;QUALapprox=1787;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1787,159,0,1787,159,1787:0,0,30,23 +chrX 1779556 . G . . END=1779938 GT:DP:GQ:MIN_DP:PL 0/0:62:97:62:0,97,1529 +chrX 1779939 . TTAGAG T, 2910.03 . AS_QUALapprox=|2924|0;AS_VarDP=0|66|0;DP=71;QUALapprox=2924;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;VarDP=66 GT:AD:DP:GQ:PL:SB 1/1:0,66,0:66:99:2924,199,0,2945,211,3037:0,0,41,25 +chrX 1779945 . T . . END=1779972 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 1779973 . T G, 2132.06 . AS_QUALapprox=|2146|0;AS_VarDP=0|70|0;DP=72;QUALapprox=2146;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;VarDP=70 GT:AD:DP:GQ:PL:SB 1/1:0,70,0:70:99:2146,208,0,2296,214,2693:0,0,40,30 +chrX 1779974 . T . . END=1780138 GT:DP:GQ:MIN_DP:PL 0/0:74:99:74:0,120,1800 +chrX 1780139 . T C, 756.64 . AS_QUALapprox=|764|0;AS_VarDP=39|29|0;BaseQRankSum=2.259;DP=68;MQRankSum=0.000;QUALapprox=764;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=0.763;VarDP=68 GT:AD:DP:GQ:PL:SB 0/1:39,29,0:68:99:764,0,986,881,1073,1954:17,22,14,15 +chrX 1780140 . T . . END=1780289 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,103,1642 +chrX 1780290 . CT C, 398.60 . AS_QUALapprox=|406|0;AS_VarDP=27|21|0;BaseQRankSum=-1.894;DP=53;MQRankSum=0.000;QUALapprox=406;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=-0.811;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:27,21,0:48:99:406,0,556,487,619,1106:12,15,11,10 +chrX 1780292 . T . . END=1780456 GT:DP:GQ:MIN_DP:PL 0/0:52:77:52:0,77,1221 +chrX 1780457 . C T, 749.64 . AS_QUALapprox=|757|0;AS_VarDP=17|20|0;BaseQRankSum=1.139;DP=38;MQRankSum=0.000;QUALapprox=757;RAW_GT_COUNT=0,1,0;RAW_MQandDP=136800,38;ReadPosRankSum=-0.275;VarDP=37 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:17,20,0:37:99:0|1:1780457_C_T:757,0,612,808,672,1480:1780457:7,10,11,9 +chrX 1780458 . G . . END=1780475 GT:DP:GQ:MIN_DP:PL 0/0:39:96:39:0,96,1440 +chrX 1780476 . C T, 775.64 . AS_QUALapprox=|783|0;AS_VarDP=19|21|0;BaseQRankSum=1.463;DP=41;MQRankSum=0.000;QUALapprox=783;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147600,41;ReadPosRankSum=0.989;VarDP=40 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:19,21,0:40:99:0|1:1780457_C_T:783,0,652,840,716,1556:1780457:11,8,12,9 +chrX 1780477 . T . . END=1782241 GT:DP:GQ:MIN_DP:PL 0/0:59:53:59:0,53,1262 +chrX 1782242 . C CTT, 64.60 . AS_QUALapprox=|72|0;AS_VarDP=14|7|0;BaseQRankSum=0.881;DP=60;MQRankSum=-3.013;QUALapprox=72;RAW_GT_COUNT=0,1,0;RAW_MQandDP=204336,60;ReadPosRankSum=-2.427;VarDP=21 GT:AD:DP:GQ:PL:SB 0/1:14,7,0:21:72:72,0,350,114,370,484:3,11,5,2 +chrX 1782243 . T . . END=1782265 GT:DP:GQ:MIN_DP:PL 0/0:60:75:60:0,75,1125 +chrX 1782266 . G . . END=1782266 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,1127 +chrX 1782267 . A . . END=1790710 GT:DP:GQ:MIN_DP:PL 0/0:54:33:39:0,33,870 +chrX 1790711 . C . . END=1790711 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,933 +chrX 1790712 . A . . END=1790713 GT:DP:GQ:MIN_DP:PL 0/0:37:74:37:0,74,1162 +chrX 1790714 . G . . END=1790715 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,864 +chrX 1790716 . C . . END=1790719 GT:DP:GQ:MIN_DP:PL 0/0:44:28:43:0,28,1096 +chrX 1790720 . G . . END=1790722 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,843 +chrX 1790723 . T TA, 209.60 . AS_QUALapprox=|217|0;AS_VarDP=7|14|0;BaseQRankSum=0.171;DP=44;MQRankSum=-1.473;QUALapprox=217;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147298,44;ReadPosRankSum=-0.262;VarDP=21 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:7,14,0:21:75:0|1:1790723_T_TA:217,0,75,238,116,353:1790723:3,4,5,9 +chrX 1790724 . A . . END=1790750 GT:DP:GQ:MIN_DP:PL 0/0:41:54:36:0,54,990 +chrX 1790751 . G . . END=1790751 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,1033 +chrX 1790752 . A . . END=1792755 GT:DP:GQ:MIN_DP:PL 0/0:49:36:45:0,36,1157 +chrX 1792756 . T C, 625.64 . AS_QUALapprox=|633|0;AS_VarDP=32|25|0;BaseQRankSum=-0.176;DP=57;MQRankSum=-1.096;QUALapprox=633;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205081,57;ReadPosRankSum=1.512;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:32,25,0:57:99:633,0,881,729,956,1684:18,14,13,12 +chrX 1792757 . A . . END=1794200 GT:DP:GQ:MIN_DP:PL 0/0:62:78:62:0,78,1340 +chrX 1794201 . TGATA T, 1807.03 . AS_QUALapprox=|1821|0;AS_VarDP=1|41|0;DP=63;MQRankSum=6.559;QUALapprox=1821;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223138,63;VarDP=42 GT:AD:DP:GQ:PL:SB 1/1:1,41,0:42:99:1821,122,0,1823,124,1824:0,1,22,19 +chrX 1794206 . G . . END=1795203 GT:DP:GQ:MIN_DP:PL 0/0:61:96:61:0,96,1269 +chrX 1795204 . C . . END=1795204 GT:DP:GQ:MIN_DP:PL 0/0:35:6:35:0,6,859 +chrX 1795205 . C . . END=1796397 GT:DP:GQ:MIN_DP:PL 0/0:36:23:29:0,23,790 +chrX 1796398 . A G, 1397.06 . AS_QUALapprox=|1411|0;AS_VarDP=0|45|0;DP=48;QUALapprox=1411;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=45 GT:AD:DP:GQ:PL:SB 1/1:0,45,0:45:99:1411,134,0,1411,134,1411:0,0,21,24 +chrX 1796399 . T . . END=1804155 GT:DP:GQ:MIN_DP:PL 0/0:56:40:56:0,40,649 +chrX 1804156 . G . . END=1804156 GT:DP:GQ:MIN_DP:PL 0/0:47:2:47:0,2,1174 +chrX 1804157 . G . . END=1806060 GT:DP:GQ:MIN_DP:PL 0/0:50:65:50:0,65,1003 +chrX 1806061 . T . . END=1806061 GT:DP:GQ:MIN_DP:PL 0/0:41:4:41:0,4,1127 +chrX 1806062 . G . . END=1806338 GT:DP:GQ:MIN_DP:PL 0/0:52:27:46:0,27,1259 +chrX 1806339 . T . . END=1806339 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,1175 +chrX 1806340 . T . . END=1806927 GT:DP:GQ:MIN_DP:PL 0/0:59:31:44:0,31,1126 +chrX 1806928 . G . . END=1806929 GT:DP:GQ:MIN_DP:PL 0/0:57:0:57:0,0,1249 +chrX 1806930 . T . . END=1806930 GT:DP:GQ:MIN_DP:PL 0/0:58:35:58:0,35,1577 +chrX 1806931 . T . . END=1806932 GT:DP:GQ:MIN_DP:PL 0/0:59:0:59:0,0,1231 +chrX 1806933 . C CAAT,CAATAAT, 1919.02 . AS_QUALapprox=|1353|906|0;AS_VarDP=0|29|17|0;DP=59;QUALapprox=1936;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=46 GT:AD:DP:GQ:PL:SB 1/2:0,29,17,0:46:99:1936,689,583,1108,0,1030,1873,683,1101,1844:0,0,18,28 +chrX 1806934 . A . . END=1807547 GT:DP:GQ:MIN_DP:PL 0/0:57:66:57:0,66,990 +chrX 1807548 . G T, 75.64 . AS_QUALapprox=|83|0;AS_VarDP=32|18|0;BaseQRankSum=-0.194;DP=67;MQRankSum=-1.129;QUALapprox=83;RAW_GT_COUNT=0,1,0;RAW_MQandDP=232176,67;ReadPosRankSum=3.286;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:32,18,0:50:83:83,0,882,179,924,1103:13,19,18,0 +chrX 1807549 . A . . END=1808938 GT:DP:GQ:MIN_DP:PL 0/0:61:67:61:0,67,958 +chrX 1808939 . T TTA, 749.60 . AS_QUALapprox=|757|0;AS_VarDP=22|25|0;BaseQRankSum=-1.918;DP=58;MQRankSum=0.000;QUALapprox=757;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-0.555;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:22,25,0:47:99:757,0,668,823,743,1566:9,13,10,15 +chrX 1808940 . T . . END=1809567 GT:DP:GQ:MIN_DP:PL 0/0:50:65:50:0,65,1226 +chrX 1809568 . CATAT C, 581.60 . AS_QUALapprox=|589|0;AS_VarDP=10|15|0;BaseQRankSum=0.690;DP=36;MQRankSum=0.000;QUALapprox=589;RAW_GT_COUNT=0,1,0;RAW_MQandDP=129600,36;ReadPosRankSum=-1.164;VarDP=25 GT:AD:DP:GQ:PL:SB 0/1:10,15,0:25:99:589,0,374,620,420,1039:4,6,8,7 +chrX 1809573 . A . . END=1816995 GT:DP:GQ:MIN_DP:PL 0/0:57:34:36:0,34,952 +chrX 1816996 . G . . END=1816996 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,1002 +chrX 1816997 . T . . END=1817029 GT:DP:GQ:MIN_DP:PL 0/0:35:54:35:0,54,1002 +chrX 1817030 . T . . END=1817030 GT:DP:GQ:MIN_DP:PL 0/0:38:16:38:0,16,1053 +chrX 1817031 . A . . END=1817411 GT:DP:GQ:MIN_DP:PL 0/0:46:46:46:0,46,997 +chrX 1817412 . C . . END=1817412 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,1040 +chrX 1817413 . A . . END=1817417 GT:DP:GQ:MIN_DP:PL 0/0:41:82:41:0,82,1138 +chrX 1817418 . C . . END=1817418 GT:DP:GQ:MIN_DP:PL 0/0:38:15:38:0,15,1013 +chrX 1817419 . A . . END=1817691 GT:DP:GQ:MIN_DP:PL 0/0:34:35:20:0,35,605 +chrX 1817692 . T . . END=1817692 GT:DP:GQ:MIN_DP:PL 0/0:21:14:21:0,14,571 +chrX 1817693 . G . . END=1818063 GT:DP:GQ:MIN_DP:PL 0/0:44:33:20:0,33,595 +chrX 1818064 . G . . END=1818064 GT:DP:GQ:MIN_DP:PL 0/0:36:9:36:0,9,933 +chrX 1818065 . T . . END=1818070 GT:DP:GQ:MIN_DP:PL 0/0:39:76:39:0,76,1058 +chrX 1818071 . G . . END=1818071 GT:DP:GQ:MIN_DP:PL 0/0:37:7:37:0,7,848 +chrX 1818072 . A . . END=1818097 GT:DP:GQ:MIN_DP:PL 0/0:33:35:31:0,35,837 +chrX 1818098 . T . . END=1818098 GT:DP:GQ:MIN_DP:PL 0/0:31:19:31:0,19,808 +chrX 1818099 . A . . END=1818164 GT:DP:GQ:MIN_DP:PL 0/0:24:31:22:0,31,665 +chrX 1818165 . C . . END=1818166 GT:DP:GQ:MIN_DP:PL 0/0:22:0:22:0,0,605 +chrX 1818167 . T TGA, 906.03 . AS_QUALapprox=|920|0;AS_VarDP=0|21|0;DP=23;QUALapprox=920;RAW_GT_COUNT=0,0,1;RAW_MQandDP=45397,23;VarDP=21 GT:AD:DP:GQ:PL:SB 1/1:0,21,0:21:63:920,63,0,920,63,920:0,0,12,9 +chrX 1818168 . G . . END=1818313 GT:DP:GQ:MIN_DP:PL 0/0:24:37:23:0,37,663 +chrX 1818314 . G . . END=1818314 GT:DP:GQ:MIN_DP:PL 0/0:41:19:41:0,19,1146 +chrX 1818315 . T . . END=1818600 GT:DP:GQ:MIN_DP:PL 0/0:44:36:40:0,36,962 +chrX 1818601 . C . . END=1818601 GT:DP:GQ:MIN_DP:PL 0/0:57:19:57:0,19,1355 +chrX 1818602 . A . . END=1818738 GT:DP:GQ:MIN_DP:PL 0/0:29:37:29:0,37,828 +chrX 1818739 . C . . END=1818739 GT:DP:GQ:MIN_DP:PL 0/0:27:17:27:0,17,740 +chrX 1818740 . A . . END=1818828 GT:DP:GQ:MIN_DP:PL 0/0:31:38:29:0,38,869 +chrX 1818829 . C . . END=1818829 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,882 +chrX 1818830 . A . . END=1819340 GT:DP:GQ:MIN_DP:PL 0/0:33:26:25:0,26,708 +chrX 1819341 . T . . END=1819341 GT:DP:GQ:MIN_DP:PL 0/0:26:4:26:0,4,655 +chrX 1819342 . A . . END=1819345 GT:DP:GQ:MIN_DP:PL 0/0:28:69:28:0,69,1035 +chrX 1819346 . G . . END=1819346 GT:DP:GQ:MIN_DP:PL 0/0:27:12:27:0,12,739 +chrX 1819347 . T . . END=1819361 GT:DP:GQ:MIN_DP:PL 0/0:30:40:30:0,40,843 +chrX 1819362 . G . . END=1819362 GT:DP:GQ:MIN_DP:PL 0/0:30:6:30:0,6,794 +chrX 1819363 . C . . END=1820031 GT:DP:GQ:MIN_DP:PL 0/0:35:21:33:0,21,829 +chrX 1820032 . G . . END=1820032 GT:DP:GQ:MIN_DP:PL 0/0:42:17:42:0,17,991 +chrX 1820033 . C . . END=1821561 GT:DP:GQ:MIN_DP:PL 0/0:46:27:37:0,27,957 +chrX 1821562 . A . . END=1821562 GT:DP:GQ:MIN_DP:PL 0/0:35:6:35:0,6,908 +chrX 1821563 . C . . END=1821577 GT:DP:GQ:MIN_DP:PL 0/0:37:41:37:0,41,966 +chrX 1821578 . A . . END=1821578 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,978 +chrX 1821579 . C . . END=1822157 GT:DP:GQ:MIN_DP:PL 0/0:49:50:46:0,50,1208 +chrX 1822158 . C T, 516.64 . AS_QUALapprox=|524|0;AS_VarDP=31|21|0;BaseQRankSum=0.358;DP=58;MQRankSum=0.000;QUALapprox=524;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-0.690;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:31,21,0:52:99:524,0,797,616,860,1476:22,9,6,15 +chrX 1822159 . G . . END=1824109 GT:DP:GQ:MIN_DP:PL 0/0:61:48:61:0,48,1117 +chrX 1824110 . A . . END=1824110 GT:DP:GQ:MIN_DP:PL 0/0:47:2:47:0,2,1285 +chrX 1824111 . C . . END=1824131 GT:DP:GQ:MIN_DP:PL 0/0:54:80:54:0,80,1738 +chrX 1824132 . C . . END=1824132 GT:DP:GQ:MIN_DP:PL 0/0:54:18:54:0,18,1398 +chrX 1824133 . A . . END=1824342 GT:DP:GQ:MIN_DP:PL 0/0:60:58:60:0,58,1333 +chrX 1824343 . T . . END=1824343 GT:DP:GQ:MIN_DP:PL 0/0:59:9:59:0,9,1493 +chrX 1824344 . C . . END=1824349 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1824350 . G . . END=1824350 GT:DP:GQ:MIN_DP:PL 0/0:47:12:47:0,12,1194 +chrX 1824351 . G . . END=1824592 GT:DP:GQ:MIN_DP:PL 0/0:59:20:54:0,20,1311 +chrX 1824593 . T . . END=1824593 GT:DP:GQ:MIN_DP:PL 0/0:63:0:63:0,0,1512 +chrX 1824594 . A . . END=1825076 GT:DP:GQ:MIN_DP:PL 0/0:55:23:52:0,23,1289 +chrX 1825077 . C . . END=1825077 GT:DP:GQ:MIN_DP:PL 0/0:55:0:55:0,0,1224 +chrX 1825078 . G . . END=1825082 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 1825083 . G . . END=1825083 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,1107 +chrX 1825084 . C . . END=1825212 GT:DP:GQ:MIN_DP:PL 0/0:47:24:45:0,24,1170 +chrX 1825213 . T C, 24.64 . AS_QUALapprox=|32|0;AS_VarDP=38|7|0;BaseQRankSum=-1.725;DP=46;MQRankSum=0.000;QUALapprox=32;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=-2.177;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:38,7,0:45:32:32,0,1058,146,1078,1224:21,17,3,4 +chrX 1825214 . C . . END=1825276 GT:DP:GQ:MIN_DP:PL 0/0:60:42:60:0,42,1454 +chrX 1825277 . G . . END=1825277 GT:DP:GQ:MIN_DP:PL 0/0:53:10:53:0,10,1243 +chrX 1825278 . G . . END=1825309 GT:DP:GQ:MIN_DP:PL 0/0:57:22:52:0,22,1247 +chrX 1825310 . A . . END=1825310 GT:DP:GQ:MIN_DP:PL 0/0:53:15:53:0,15,1353 +chrX 1825311 . C . . END=1825505 GT:DP:GQ:MIN_DP:PL 0/0:55:36:55:0,36,1236 +chrX 1825506 . G . . END=1825506 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,1046 +chrX 1825507 . C . . END=1825557 GT:DP:GQ:MIN_DP:PL 0/0:46:65:46:0,65,1135 +chrX 1825558 . T C, 95.64 . AS_QUALapprox=|103|0;AS_VarDP=36|10|0;BaseQRankSum=-3.023;DP=50;MQRankSum=1.117;QUALapprox=103;RAW_GT_COUNT=0,1,0;RAW_MQandDP=175185,50;ReadPosRankSum=1.965;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:36,10,0:46:99:0|1:1825558_T_C:103,0,1258,211,1287,1498:1825558:22,14,7,3 +chrX 1825559 . C . . END=1825577 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 1825578 . T C, 97.64 . AS_QUALapprox=|105|0;AS_VarDP=40|12|0;BaseQRankSum=-4.366;DP=54;MQRankSum=1.295;QUALapprox=105;RAW_GT_COUNT=0,1,0;RAW_MQandDP=189234,54;ReadPosRankSum=1.128;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:40,12,0:52:99:0|1:1825558_T_C:105,0,1399,225,1433,1658:1825558:27,13,6,6 +chrX 1825579 . A . . END=1825627 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,102,1439 +chrX 1825628 . A . . END=1825628 GT:DP:GQ:MIN_DP:PL 0/0:46:19:46:0,19,1100 +chrX 1825629 . C . . END=1825787 GT:DP:GQ:MIN_DP:PL 0/0:50:36:41:0,36,1075 +chrX 1825788 . T C, 74.64 . AS_QUALapprox=|82|0;AS_VarDP=34|9|0;BaseQRankSum=-1.740;DP=46;MQRankSum=0.946;QUALapprox=82;RAW_GT_COUNT=0,1,0;RAW_MQandDP=161726,46;ReadPosRankSum=2.255;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:34,9,0:43:82:82,0,840,181,866,1047:17,17,4,5 +chrX 1825789 . A . . END=1825800 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 1825801 . A . . END=1825801 GT:DP:GQ:MIN_DP:PL 0/0:50:0:50:0,0,1083 +chrX 1825802 . C . . END=1825822 GT:DP:GQ:MIN_DP:PL 0/0:55:77:55:0,77,1423 +chrX 1825823 . G . . END=1825823 GT:DP:GQ:MIN_DP:PL 0/0:44:19:44:0,19,1072 +chrX 1825824 . A . . END=1825838 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,108,1390 +chrX 1825839 . G . . END=1825839 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,1063 +chrX 1825840 . C . . END=1825854 GT:DP:GQ:MIN_DP:PL 0/0:49:87:49:0,87,1412 +chrX 1825855 . G . . END=1825855 GT:DP:GQ:MIN_DP:PL 0/0:41:10:41:0,10,977 +chrX 1825856 . C . . END=1825858 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 1825859 . A . . END=1825859 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,1275 +chrX 1825860 . C . . END=1825870 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 1825871 . A . . END=1825871 GT:DP:GQ:MIN_DP:PL 0/0:52:0:52:0,0,1013 +chrX 1825872 . A . . END=1826095 GT:DP:GQ:MIN_DP:PL 0/0:67:20:58:0,20,1259 +chrX 1826096 . T . . END=1826096 GT:DP:GQ:MIN_DP:PL 0/0:59:0:59:0,0,1522 +chrX 1826097 . C . . END=1826273 GT:DP:GQ:MIN_DP:PL 0/0:61:29:57:0,29,1419 +chrX 1826274 . T . . END=1826274 GT:DP:GQ:MIN_DP:PL 0/0:57:0:57:0,0,1247 +chrX 1826275 . A . . END=1826313 GT:DP:GQ:MIN_DP:PL 0/0:55:72:55:0,72,1478 +chrX 1826314 . T . . END=1826314 GT:DP:GQ:MIN_DP:PL 0/0:44:14:44:0,14,1052 +chrX 1826315 . T . . END=1826323 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,109,1386 +chrX 1826324 . A . . END=1826324 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,996 +chrX 1826325 . C . . END=1826331 GT:DP:GQ:MIN_DP:PL 0/0:48:63:48:0,63,1405 +chrX 1826332 . T . . END=1826332 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,966 +chrX 1826333 . A . . END=1826342 GT:DP:GQ:MIN_DP:PL 0/0:48:75:48:0,75,1339 +chrX 1826343 . G . . END=1826343 GT:DP:GQ:MIN_DP:PL 0/0:44:14:44:0,14,1192 +chrX 1826344 . C . . END=1826447 GT:DP:GQ:MIN_DP:PL 0/0:54:42:54:0,42,1295 +chrX 1826448 . T . . END=1826448 GT:DP:GQ:MIN_DP:PL 0/0:35:16:35:0,16,828 +chrX 1826449 . A . . END=1826452 GT:DP:GQ:MIN_DP:PL 0/0:35:75:35:0,75,1125 +chrX 1826453 . CT C, 13.59 . AS_QUALapprox=|21|0;AS_VarDP=31|3|0;BaseQRankSum=-0.926;DP=37;MQRankSum=-1.935;QUALapprox=21;RAW_GT_COUNT=0,1,0;RAW_MQandDP=130361,37;ReadPosRankSum=0.846;VarDP=34 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:31,3,0:34:21:0|1:1826453_CT_C:21,0,1196,114,1205,1319:1826453:11,20,2,1 +chrX 1826455 . T . . END=1826465 GT:DP:GQ:MIN_DP:PL 0/0:32:41:32:0,41,844 +chrX 1826466 . T . . END=1826466 GT:DP:GQ:MIN_DP:PL 0/0:33:6:33:0,6,1178 +chrX 1826467 . T . . END=1826488 GT:DP:GQ:MIN_DP:PL 0/0:38:93:38:0,93,1206 +chrX 1826489 . T . . END=1826489 GT:DP:GQ:MIN_DP:PL 0/0:35:11:35:0,11,948 +chrX 1826490 . C . . END=1826501 GT:DP:GQ:MIN_DP:PL 0/0:38:20:34:0,20,972 +chrX 1826502 . A . . END=1826502 GT:DP:GQ:MIN_DP:PL 0/0:40:17:40:0,17,1013 +chrX 1826503 . C . . END=1826596 GT:DP:GQ:MIN_DP:PL 0/0:49:48:49:0,48,1196 +chrX 1826597 . T . . END=1826597 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,1040 +chrX 1826598 . A . . END=1826632 GT:DP:GQ:MIN_DP:PL 0/0:53:78:53:0,78,1388 +chrX 1826633 . G . . END=1826633 GT:DP:GQ:MIN_DP:PL 0/0:51:9:51:0,9,1223 +chrX 1826634 . G . . END=1826658 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 1826659 . T . . END=1826659 GT:DP:GQ:MIN_DP:PL 0/0:54:4:54:0,4,1390 +chrX 1826660 . C . . END=1826696 GT:DP:GQ:MIN_DP:PL 0/0:57:28:54:0,28,1441 +chrX 1826697 . T . . END=1826697 GT:DP:GQ:MIN_DP:PL 0/0:66:0:66:0,0,1386 +chrX 1826698 . A . . END=1826833 GT:DP:GQ:MIN_DP:PL 0/0:72:33:68:0,33,1637 +chrX 1826834 . G . . END=1826834 GT:DP:GQ:MIN_DP:PL 0/0:63:0:63:0,0,1453 +chrX 1826835 . C . . END=1826850 GT:DP:GQ:MIN_DP:PL 0/0:74:53:74:0,53,1779 +chrX 1826851 . T . . END=1826851 GT:DP:GQ:MIN_DP:PL 0/0:66:0:66:0,0,1554 +chrX 1826852 . A . . END=1826958 GT:DP:GQ:MIN_DP:PL 0/0:63:31:48:0,31,1100 +chrX 1826959 . T . . END=1826960 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,952 +chrX 1826961 . G . . END=1826963 GT:DP:GQ:MIN_DP:PL 0/0:49:84:49:0,84,1523 +chrX 1826964 . T . . END=1826964 GT:DP:GQ:MIN_DP:PL 0/0:52:0:52:0,0,1270 +chrX 1826965 . C . . END=1829367 GT:DP:GQ:MIN_DP:PL 0/0:59:48:59:0,48,900 +chrX 1829368 . G T, 16.63 . AS_QUALapprox=|24|0;AS_VarDP=28|19|0;BaseQRankSum=-0.206;DP=57;MQRankSum=-0.617;QUALapprox=24;RAW_GT_COUNT=0,1,0;RAW_MQandDP=189875,57;ReadPosRankSum=3.189;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:28,19,0:47:24:24,0,731,108,764,872:12,16,19,0 +chrX 1829369 . A . . END=1834390 GT:DP:GQ:MIN_DP:PL 0/0:46:29:44:0,29,893 +chrX 1834391 . A G, 486.64 . AS_QUALapprox=|494|0;AS_VarDP=22|20|0;BaseQRankSum=-1.307;DP=46;MQRankSum=0.000;QUALapprox=494;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=1.626;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:22,20,0:42:99:494,0,607,560,667,1227:13,9,11,9 +chrX 1834392 . A . . END=1834595 GT:DP:GQ:MIN_DP:PL 0/0:30:21:26:0,21,315 +chrX 1834596 . G . . END=1834596 GT:DP:GQ:MIN_DP:PL 0/0:35:5:35:0,5,785 +chrX 1834597 . G . . END=1835503 GT:DP:GQ:MIN_DP:PL 0/0:53:51:53:0,51,789 +chrX 1835504 . G . . END=1835505 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,938 +chrX 1835506 . G . . END=1837155 GT:DP:GQ:MIN_DP:PL 0/0:29:27:25:0,27,630 +chrX 1837156 . A . . END=1837156 GT:DP:GQ:MIN_DP:PL 0/0:15:10:15:0,10,421 +chrX 1837157 . A . . END=1837169 GT:DP:GQ:MIN_DP:PL 0/0:16:30:15:0,30,421 +chrX 1837170 . A . . END=1837170 GT:DP:GQ:MIN_DP:PL 0/0:18:5:18:0,5,457 +chrX 1837171 . T . . END=1837175 GT:DP:GQ:MIN_DP:PL 0/0:20:32:19:0,32,551 +chrX 1837176 . A . . END=1837176 GT:DP:GQ:MIN_DP:PL 0/0:18:19:18:0,19,516 +chrX 1837177 . C . . END=1837177 GT:DP:GQ:MIN_DP:PL 0/0:24:72:24:0,72,804 +chrX 1837178 . T . . END=1837178 GT:DP:GQ:MIN_DP:PL 0/0:24:8:24:0,8,636 +chrX 1837179 . G . . END=1837476 GT:DP:GQ:MIN_DP:PL 0/0:17:22:15:0,22,456 +chrX 1837477 . T . . END=1837477 GT:DP:GQ:MIN_DP:PL 0/0:15:10:15:0,10,432 +chrX 1837478 . T . . END=1837480 GT:DP:GQ:MIN_DP:PL 0/0:16:45:16:0,45,505 +chrX 1837481 . T . . END=1837481 GT:DP:GQ:MIN_DP:PL 0/0:17:0:17:0,0,413 +chrX 1837482 . C . . END=1837535 GT:DP:GQ:MIN_DP:PL 0/0:24:33:20:0,33,540 +chrX 1837536 . G . . END=1837536 GT:DP:GQ:MIN_DP:PL 0/0:26:8:26:0,8,724 +chrX 1837537 . A . . END=1837551 GT:DP:GQ:MIN_DP:PL 0/0:27:22:27:0,22,744 +chrX 1837552 . A . . END=1837552 GT:DP:GQ:MIN_DP:PL 0/0:27:18:27:0,18,751 +chrX 1837553 . T . . END=1837553 GT:DP:GQ:MIN_DP:PL 0/0:27:69:27:0,69,1035 +chrX 1837554 . C . . END=1837555 GT:DP:GQ:MIN_DP:PL 0/0:26:0:26:0,0,671 +chrX 1837556 . C . . END=1837556 GT:DP:GQ:MIN_DP:PL 0/0:27:67:27:0,67,860 +chrX 1837557 . A . . END=1837557 GT:DP:GQ:MIN_DP:PL 0/0:27:7:27:0,7,761 +chrX 1837558 . T . . END=1837628 GT:DP:GQ:MIN_DP:PL 0/0:26:25:25:0,25,644 +chrX 1837629 . A . . END=1837629 GT:DP:GQ:MIN_DP:PL 0/0:26:19:26:0,19,704 +chrX 1837630 . C . . END=1837683 GT:DP:GQ:MIN_DP:PL 0/0:27:46:27:0,46,751 +chrX 1837684 . A . . END=1837684 GT:DP:GQ:MIN_DP:PL 0/0:22:4:22:0,4,514 +chrX 1837685 . A . . END=1837689 GT:DP:GQ:MIN_DP:PL 0/0:27:43:27:0,43,784 +chrX 1837690 . G . . END=1837690 GT:DP:GQ:MIN_DP:PL 0/0:26:19:26:0,19,765 +chrX 1837691 . C . . END=1837705 GT:DP:GQ:MIN_DP:PL 0/0:28:29:26:0,29,754 +chrX 1837706 . T . . END=1837706 GT:DP:GQ:MIN_DP:PL 0/0:27:17:27:0,17,771 +chrX 1837707 . G . . END=1837736 GT:DP:GQ:MIN_DP:PL 0/0:30:46:30:0,46,757 +chrX 1837737 . C . . END=1837738 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,839 +chrX 1837739 . A . . END=1837747 GT:DP:GQ:MIN_DP:PL 0/0:36:67:36:0,67,1062 +chrX 1837748 . A . . END=1837748 GT:DP:GQ:MIN_DP:PL 0/0:38:11:38:0,11,1015 +chrX 1837749 . A . . END=1839252 GT:DP:GQ:MIN_DP:PL 0/0:60:60:60:0,60,1250 +chrX 1839253 . C . . END=1839253 GT:DP:GQ:MIN_DP:PL 0/0:53:6:53:0,6,990 +chrX 1839254 . T . . END=1839274 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1839275 . G . . END=1839275 GT:DP:GQ:MIN_DP:PL 0/0:56:0:56:0,0,1211 +chrX 1839276 . T . . END=1839280 GT:DP:GQ:MIN_DP:PL 0/0:62:57:62:0,57,1628 +chrX 1839281 . G . . END=1839281 GT:DP:GQ:MIN_DP:PL 0/0:57:8:57:0,8,1414 +chrX 1839282 . T . . END=1839306 GT:DP:GQ:MIN_DP:PL 0/0:59:20:59:0,20,1465 +chrX 1839307 . G . . END=1839307 GT:DP:GQ:MIN_DP:PL 0/0:56:2:56:0,2,1452 +chrX 1839308 . T . . END=1841559 GT:DP:GQ:MIN_DP:PL 0/0:61:21:40:0,21,947 +chrX 1841560 . C A, 7.60 . AS_QUALapprox=|15|0;AS_VarDP=26|8|0;BaseQRankSum=-2.606;DP=45;MQRankSum=-1.022;QUALapprox=15;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151961,45;ReadPosRankSum=1.117;VarDP=34 GT:AD:DP:GQ:PL:SB 0/1:26,8,0:34:15:15,0,668,92,690,781:16,10,0,8 +chrX 1841561 . A . . END=1844099 GT:DP:GQ:MIN_DP:PL 0/0:58:24:49:0,24,1096 +chrX 1844100 . T . . END=1844100 GT:DP:GQ:MIN_DP:PL 0/0:41:14:41:0,14,1076 +chrX 1844101 . C . . END=1844854 GT:DP:GQ:MIN_DP:PL 0/0:66:65:66:0,65,1146 +chrX 1844855 . A T, 1610.06 . AS_QUALapprox=|1624|0;AS_VarDP=0|60|0;DP=74;QUALapprox=1624;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:1624,179,0,1708,208,1923:0,0,22,37 +chrX 1844856 . A . . END=1845286 GT:DP:GQ:MIN_DP:PL 0/0:53:61:53:0,61,1155 +chrX 1845287 . A T, 679.64 . AS_QUALapprox=|687|0;AS_VarDP=26|26|0;BaseQRankSum=-1.508;DP=52;MQRankSum=0.000;QUALapprox=687;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=-1.721;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:26,26,0:52:99:687,0,728,765,806,1571:15,11,12,14 +chrX 1845288 . G . . END=1845673 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 1845674 . A . . END=1845674 GT:DP:GQ:MIN_DP:PL 0/0:65:0:65:0,0,1680 +chrX 1845675 . T . . END=1845707 GT:DP:GQ:MIN_DP:PL 0/0:61:42:61:0,42,1440 +chrX 1845708 . C CT,CTTTT, 414.02 . AS_QUALapprox=|235|390|0;AS_VarDP=1|2|10|0;BaseQRankSum=0.917;DP=51;MQRankSum=0.000;QUALapprox=431;RAW_GT_COUNT=0,0,1;RAW_MQandDP=167851,51;ReadPosRankSum=-0.937;VarDP=13 GT:AD:DP:GQ:PL:SB 1/2:1,2,10,0:13:41:431,231,196,41,0,46,365,238,77,365:0,1,8,4 +chrX 1845709 . T . . END=1845737 GT:DP:GQ:MIN_DP:PL 0/0:46:30:44:0,30,450 +chrX 1845738 . G . . END=1845740 GT:DP:GQ:MIN_DP:PL 0/0:24:0:24:0,0,147 +chrX 1845741 . G . . END=1853568 GT:DP:GQ:MIN_DP:PL 0/0:54:25:20:0,25,616 +chrX 1853569 . T . . END=1853569 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1077 +chrX 1853570 . A . . END=1855756 GT:DP:GQ:MIN_DP:PL 0/0:58:45:58:0,45,919 +chrX 1855757 . C . . END=1855757 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,942 +chrX 1855758 . A . . END=1855811 GT:DP:GQ:MIN_DP:PL 0/0:34:48:34:0,48,720 +chrX 1855812 . A . . END=1855812 GT:DP:GQ:MIN_DP:PL 0/0:20:0:20:0,0,516 +chrX 1855813 . G . . END=1855849 GT:DP:GQ:MIN_DP:PL 0/0:15:21:10:0,21,315 +chrX 1855850 . G . . END=1856107 GT:DP:GQ:MIN_DP:PL 0/0:0:0:0:0,0,0 +chrX 1856108 . G . . END=1856126 GT:DP:GQ:MIN_DP:PL 0/0:11:21:9:0,21,243 +chrX 1856127 . T . . END=1856127 GT:DP:GQ:MIN_DP:PL 0/0:14:7:14:0,7,417 +chrX 1856128 . C . . END=1856170 GT:DP:GQ:MIN_DP:PL 0/0:15:39:13:0,39,432 +chrX 1856171 . C . . END=1856171 GT:DP:GQ:MIN_DP:PL 0/0:22:7:22:0,7,606 +chrX 1856172 . T . . END=1856226 GT:DP:GQ:MIN_DP:PL 0/0:29:34:26:0,34,660 +chrX 1856227 . A . . END=1856227 GT:DP:GQ:MIN_DP:PL 0/0:33:15:33:0,15,868 +chrX 1856228 . G . . END=1856482 GT:DP:GQ:MIN_DP:PL 0/0:62:51:62:0,51,1046 +chrX 1856483 . CT C, 169.60 . AS_QUALapprox=|177|0;AS_VarDP=32|11|0;BaseQRankSum=1.457;DP=56;MQRankSum=0.000;QUALapprox=177;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=0.172;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:32,11,0:43:99:177,0,724,273,757,1031:13,19,3,8 +chrX 1856485 . T . . END=1857180 GT:DP:GQ:MIN_DP:PL 0/0:59:63:59:0,63,1326 +chrX 1857181 . G C, 724.64 . AS_QUALapprox=|732|0;AS_VarDP=32|27|0;BaseQRankSum=0.258;DP=62;MQRankSum=0.000;QUALapprox=732;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=-0.548;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:32,27,0:59:99:732,0,864,827,945,1773:16,16,12,15 +chrX 1857182 . A . . END=1858800 GT:DP:GQ:MIN_DP:PL 0/0:54:20:43:0,20,1072 +chrX 1858801 . C T, 1048.64 . AS_QUALapprox=|1056|0;AS_VarDP=30|38|0;BaseQRankSum=1.736;DP=69;MQRankSum=0.000;QUALapprox=1056;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=0.327;VarDP=68 GT:AD:DP:GQ:PL:SB 0/1:30,38,0:68:99:1056,0,723,1145,838,1983:14,16,15,23 +chrX 1858802 . C . . END=1859051 GT:DP:GQ:MIN_DP:PL 0/0:67:77:67:0,77,1345 +chrX 1859052 . C CA, 269.60 . AS_QUALapprox=|277|0;AS_VarDP=13|18|0;BaseQRankSum=-1.280;DP=51;MQRankSum=-0.784;QUALapprox=277;RAW_GT_COUNT=0,1,0;RAW_MQandDP=181600,51;ReadPosRankSum=-1.523;VarDP=31 GT:AD:DP:GQ:PL:SB 0/1:13,18,0:31:99:277,0,207,316,260,575:9,4,9,9 +chrX 1859053 . A . . END=1859951 GT:DP:GQ:MIN_DP:PL 0/0:57:23:54:0,23,1403 +chrX 1859952 . C T, 814.64 . AS_QUALapprox=|822|0;AS_VarDP=17|30|0;BaseQRankSum=-0.942;DP=50;MQRankSum=0.411;QUALapprox=822;RAW_GT_COUNT=0,1,0;RAW_MQandDP=175266,50;ReadPosRankSum=0.343;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:17,30,0:47:99:822,0,429,873,519,1391:8,9,15,15 +chrX 1859953 . C . . END=1860375 GT:DP:GQ:MIN_DP:PL 0/0:61:90:61:0,90,1622 +chrX 1860376 . C T, 1465.06 . AS_QUALapprox=|1479|0;AS_VarDP=0|46|0;DP=49;QUALapprox=1479;RAW_GT_COUNT=0,0,1;RAW_MQandDP=173284,49;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1479,138,0,1479,138,1479:0,0,24,22 +chrX 1860377 . G . . END=1860411 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,107,1369 +chrX 1860412 . A G, 1571.06 . AS_QUALapprox=|1585|0;AS_VarDP=0|50|0;DP=53;QUALapprox=1585;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187684,53;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1585,149,0,1585,149,1585:0,0,29,21 +chrX 1860413 . T . . END=1860551 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,108,1454 +chrX 1860552 . T C, 2663.06 . AS_QUALapprox=|2677|0;AS_VarDP=0|60|0;DP=61;QUALapprox=2677;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,60,0:60:99:0|1:1860552_T_C:2677,181,0,2677,181,2677:1860552:0,0,26,34 +chrX 1860553 . G . . END=1860557 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1860558 . A G, 2629.06 . AS_QUALapprox=|2643|0;AS_VarDP=0|59|0;DP=61;QUALapprox=2643;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=59 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,59,0:59:99:0|1:1860552_T_C:2643,178,0,2643,178,2643:1860552:0,0,25,34 +chrX 1860559 . G . . END=1860605 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1860606 . T C, 2854.06 . AS_QUALapprox=|2868|0;AS_VarDP=0|65|0;DP=65;QUALapprox=2868;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=65 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,65,0:65:99:0|1:1860606_T_C:2868,196,0,2868,196,2868:1860606:0,0,24,41 +chrX 1860607 . G . . END=1860607 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1860608 . C T, 2889.06 . AS_QUALapprox=|2903|0;AS_VarDP=0|66|0;DP=66;QUALapprox=2903;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=66 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,66,0:66:99:0|1:1860606_T_C:2903,199,0,2903,199,2903:1860606:0,0,25,41 +chrX 1860609 . T . . END=1860627 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1860628 . T C, 2624.06 . AS_QUALapprox=|2638|0;AS_VarDP=0|60|0;DP=62;QUALapprox=2638;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,60,0:60:99:0|1:1860606_T_C:2638,181,0,2638,181,2638:1860606:0,0,18,42 +chrX 1860629 . G . . END=1860875 GT:DP:GQ:MIN_DP:PL 0/0:52:91:52:0,91,1165 +chrX 1860876 . G A, 1286.06 . AS_QUALapprox=|1300|0;AS_VarDP=1|41|0;BaseQRankSum=2.205;DP=45;MQRankSum=0.000;QUALapprox=1300;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162000,45;ReadPosRankSum=1.155;VarDP=42 GT:AD:DP:GQ:PL:SB 1/1:1,41,0:42:99:1300,116,0,1303,123,1309:0,1,24,17 +chrX 1860877 . A . . END=1860901 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,103,1237 +chrX 1860902 . C T, 1569.06 . AS_QUALapprox=|1583|0;AS_VarDP=0|48|0;DP=51;QUALapprox=1583;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=48 GT:AD:DP:GQ:PL:SB 1/1:0,48,0:48:99:1583,144,0,1583,144,1583:0,0,28,20 +chrX 1860903 . G . . END=1861943 GT:DP:GQ:MIN_DP:PL 0/0:55:58:55:0,58,1157 +chrX 1861944 . C T, 541.64 . AS_QUALapprox=|549|0;AS_VarDP=33|22|0;BaseQRankSum=0.498;DP=56;MQRankSum=-1.188;QUALapprox=549;RAW_GT_COUNT=0,1,0;RAW_MQandDP=200809,56;ReadPosRankSum=-0.481;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:33,22,0:55:99:549,0,861,647,928,1575:21,12,8,14 +chrX 1861945 . G . . END=1862471 GT:DP:GQ:MIN_DP:PL 0/0:56:40:56:0,40,1321 +chrX 1862472 . C G, 455.64 . AS_QUALapprox=|463|0;AS_VarDP=35|19|0;BaseQRankSum=0.050;DP=62;MQRankSum=0.000;QUALapprox=463;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=-1.232;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:35,19,0:54:99:463,0,1015,569,1071,1640:19,16,11,8 +chrX 1862473 . C . . END=1862650 GT:DP:GQ:MIN_DP:PL 0/0:45:41:45:0,41,849 +chrX 1862651 . A . . END=1862651 GT:DP:GQ:MIN_DP:PL 0/0:26:0:26:0,0,418 +chrX 1862652 . A . . END=1862658 GT:DP:GQ:MIN_DP:PL 0/0:26:21:26:0,21,315 +chrX 1862659 . A . . END=1862659 GT:DP:GQ:MIN_DP:PL 0/0:28:3:28:0,3,582 +chrX 1862660 . A . . END=1862671 GT:DP:GQ:MIN_DP:PL 0/0:24:36:23:0,36,540 +chrX 1862672 . AGGAAGGAAGGAAGGAAGGAAGGAAGGAG A, 513.60 . AS_QUALapprox=|521|0;AS_VarDP=12|14|0;BaseQRankSum=-1.852;DP=30;MQRankSum=-1.280;QUALapprox=521;RAW_GT_COUNT=0,1,0;RAW_MQandDP=103520,30;ReadPosRankSum=2.190;VarDP=26 GT:AD:DP:GQ:PL:SB 0/1:12,14,0:26:99:521,0,428,557,471,1028:8,4,10,4 +chrX 1862701 . G . . END=1862701 GT:DP:GQ:MIN_DP:PL 0/0:14:36:14:0,36,540 +chrX 1862702 . G . . END=1862703 GT:DP:GQ:MIN_DP:PL 0/0:18:0:18:0,0,421 +chrX 1862704 . G . . END=1862710 GT:DP:GQ:MIN_DP:PL 0/0:18:29:18:0,29,546 +chrX 1862711 . A . . END=1862711 GT:DP:GQ:MIN_DP:PL 0/0:19:0:19:0,0,472 +chrX 1862712 . G . . END=1862741 GT:DP:GQ:MIN_DP:PL 0/0:27:25:18:0,25,520 +chrX 1862742 . T . . END=1862742 GT:DP:GQ:MIN_DP:PL 0/0:38:11:38:0,11,893 +chrX 1862743 . G . . END=1862994 GT:DP:GQ:MIN_DP:PL 0/0:56:29:53:0,29,960 +chrX 1862995 . G . . END=1862995 GT:DP:GQ:MIN_DP:PL 0/0:56:0:56:0,0,1376 +chrX 1862996 . A . . END=1862998 GT:DP:GQ:MIN_DP:PL 0/0:59:35:58:0,35,1638 +chrX 1862999 . G . . END=1862999 GT:DP:GQ:MIN_DP:PL 0/0:56:4:56:0,4,1427 +chrX 1863000 . A . . END=1863002 GT:DP:GQ:MIN_DP:PL 0/0:59:35:58:0,35,1638 +chrX 1863003 . G . . END=1863003 GT:DP:GQ:MIN_DP:PL 0/0:54:0:54:0,0,1329 +chrX 1863004 . A . . END=1863027 GT:DP:GQ:MIN_DP:PL 0/0:56:29:52:0,29,1374 +chrX 1863028 . T . . END=1863028 GT:DP:GQ:MIN_DP:PL 0/0:41:14:41:0,14,911 +chrX 1863029 . A . . END=1863040 GT:DP:GQ:MIN_DP:PL 0/0:38:75:38:0,75,1125 +chrX 1863041 . GAGAAAGAA G,GAGAAAGAAAGAAAGAAAGAAAGAAAGAAGAAAGAA, 813.02 . AS_QUALapprox=|331|485|0;AS_VarDP=0|9|15|0;DP=43;QUALapprox=830;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147403,43;VarDP=24 GT:AD:DP:GQ:PL:SB 1/2:0,9,15,0:24:99:830,499,520,345,0,566,865,551,491,1008:0,0,22,2 +chrX 1863050 . A . . END=1863067 GT:DP:GQ:MIN_DP:PL 0/0:58:81:58:0,81,1260 +chrX 1863068 . A . . END=1863068 GT:DP:GQ:MIN_DP:PL 0/0:61:0:61:0,0,1355 +chrX 1863069 . A . . END=1864012 GT:DP:GQ:MIN_DP:PL 0/0:52:38:52:0,38,1233 +chrX 1864013 . C T, 526.64 . AS_QUALapprox=|534|0;AS_VarDP=26|22|0;BaseQRankSum=-2.122;DP=50;MQRankSum=0.000;QUALapprox=534;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=2.173;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:26,22,0:48:99:534,0,740,612,805,1417:15,11,15,7 +chrX 1864014 . C . . END=1865161 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,104,1414 +chrX 1865162 . G A, 1841.06 . AS_QUALapprox=|1855|0;AS_VarDP=1|55|0;BaseQRankSum=3.811;DP=59;MQRankSum=0.000;QUALapprox=1855;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;ReadPosRankSum=1.052;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:1,55,0:56:99:1855,158,0,1858,165,1865:0,1,26,29 +chrX 1865163 . G . . END=1866301 GT:DP:GQ:MIN_DP:PL 0/0:61:89:61:0,89,1211 +chrX 1866302 . C T, 548.64 . AS_QUALapprox=|556|0;AS_VarDP=23|20|0;BaseQRankSum=1.313;DP=44;MQRankSum=0.000;QUALapprox=556;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=1.011;VarDP=43 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,20,0:43:99:0|1:1866302_C_T:556,0,828,625,889,1514:1866302:14,9,15,5 +chrX 1866303 . G . . END=1866324 GT:DP:GQ:MIN_DP:PL 0/0:40:96:40:0,96,1211 +chrX 1866325 . A G, 489.64 . AS_QUALapprox=|497|0;AS_VarDP=17|19|0;BaseQRankSum=-0.299;DP=38;MQRankSum=0.000;QUALapprox=497;RAW_GT_COUNT=0,1,0;RAW_MQandDP=136800,38;ReadPosRankSum=-1.189;VarDP=36 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:17,19,0:36:99:1|0:1866302_C_T:497,0,626,548,682,1231:1866302:11,6,12,7 +chrX 1866326 . A . . END=1866344 GT:DP:GQ:MIN_DP:PL 0/0:36:65:36:0,65,1024 +chrX 1866345 . CA C,CAA, 92.60 . AS_QUALapprox=|100|9|0;AS_VarDP=13|10|5|0;BaseQRankSum=0.764;DP=55;MQRankSum=-0.859;QUALapprox=100;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194000,55;ReadPosRankSum=2.414;VarDP=28 GT:AD:DP:GQ:PL:SB 0/1:13,10,5,0:28:91:100,0,391,91,141,368,189,337,378,528:7,6,8,7 +chrX 1866347 . A . . END=1866494 GT:DP:GQ:MIN_DP:PL 0/0:73:76:73:0,76,1746 +chrX 1866495 . CT C, 1174.03 . AS_QUALapprox=|1188|0;AS_VarDP=2|48|0;BaseQRankSum=-1.021;DP=73;MQRankSum=0.000;QUALapprox=1188;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;ReadPosRankSum=-0.545;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:2,48,0:50:99:1188,104,0,1194,144,1235:2,0,27,21 +chrX 1866497 . T . . END=1866629 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 1866630 . C T, 1025.64 . AS_QUALapprox=|1033|0;AS_VarDP=42|39|0;BaseQRankSum=0.939;DP=82;MQRankSum=0.000;QUALapprox=1033;RAW_GT_COUNT=0,1,0;RAW_MQandDP=295200,82;ReadPosRankSum=1.248;VarDP=81 GT:AD:DP:GQ:PL:SB 0/1:42,39,0:81:99:1033,0,1067,1158,1184,2342:20,22,18,21 +chrX 1866631 . G . . END=1866660 GT:DP:GQ:MIN_DP:PL 0/0:77:99:77:0,120,1800 +chrX 1866661 . C T, 1063.64 . AS_QUALapprox=|1071|0;AS_VarDP=36|38|0;BaseQRankSum=1.405;DP=79;MQRankSum=0.000;QUALapprox=1071;RAW_GT_COUNT=0,1,0;RAW_MQandDP=284400,79;ReadPosRankSum=0.406;VarDP=74 GT:AD:DP:GQ:PL:SB 0/1:36,38,0:74:99:1071,0,989,1179,1103,2282:17,19,22,16 +chrX 1866662 . C . . END=1866976 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1683 +chrX 1866977 . T C, 741.64 . AS_QUALapprox=|749|0;AS_VarDP=41|29|0;BaseQRankSum=1.021;DP=72;MQRankSum=-0.207;QUALapprox=749;RAW_GT_COUNT=0,1,0;RAW_MQandDP=255925,72;ReadPosRankSum=0.280;VarDP=70 GT:AD:DP:GQ:PL:SB 0/1:41,29,0:70:99:749,0,1070,871,1158,2028:19,22,13,16 +chrX 1866978 . A . . END=1867790 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,113,1739 +chrX 1867791 . G A, 741.64 . AS_QUALapprox=|749|0;AS_VarDP=30|28|0;BaseQRankSum=0.218;DP=60;MQRankSum=0.000;QUALapprox=749;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=0.420;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:30,28,0:58:99:749,0,808,839,893,1732:13,17,16,12 +chrX 1867792 . C . . END=1867902 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,100,1533 +chrX 1867903 . GA G, 667.60 . AS_QUALapprox=|675|0;AS_VarDP=27|28|0;BaseQRankSum=1.787;DP=62;MQRankSum=0.000;QUALapprox=675;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=0.152;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:27,28,0:55:99:675,0,640,756,725,1481:12,15,9,19 +chrX 1867905 . A . . END=1868810 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,104,1573 +chrX 1868811 . A G, 785.64 . AS_QUALapprox=|793|0;AS_VarDP=20|30|0;BaseQRankSum=-2.284;DP=52;MQRankSum=0.000;QUALapprox=793;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=1.209;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:20,30,0:50:99:793,0,546,853,635,1488:13,7,10,20 +chrX 1868812 . T . . END=1869550 GT:DP:GQ:MIN_DP:PL 0/0:55:54:51:0,54,1084 +chrX 1869551 . CA *,C,AA, 271.12 . AS_QUALapprox=|0|283|11|0;AS_VarDP=8|4|13|4|0;BaseQRankSum=-0.928;DP=52;MQRankSum=0.000;QUALapprox=283;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=0.488;VarDP=29 GT:AD:DP:GQ:PL:SB 0/2:8,4,13,4,0:29:99:283,244,889,0,124,217,272,844,99,1008,355,890,208,922,988:7,1,9,12 +chrX 1869553 . A . . END=1869568 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,109,1467 +chrX 1869569 . C . . END=1869569 GT:DP:GQ:MIN_DP:PL 0/0:48:11:48:0,11,1241 +chrX 1869570 . A . . END=1869883 GT:DP:GQ:MIN_DP:PL 0/0:64:58:64:0,58,1294 +chrX 1869884 . C A, 956.64 . AS_QUALapprox=|964|0;AS_VarDP=31|36|0;BaseQRankSum=0.044;DP=69;MQRankSum=0.000;QUALapprox=964;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=0.075;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:31,36,0:67:99:964,0,833,1058,942,1999:19,12,20,16 +chrX 1869885 . A . . END=1870092 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1623 +chrX 1870093 . G A, 673.64 . AS_QUALapprox=|681|0;AS_VarDP=28|26|0;BaseQRankSum=-0.132;DP=57;MQRankSum=0.000;QUALapprox=681;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=0.294;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:28,26,0:54:99:681,0,780,766,858,1624:10,18,13,13 +chrX 1870094 . T . . END=1871075 GT:DP:GQ:MIN_DP:PL 0/0:61:97:61:0,97,1528 +chrX 1871076 . CT C, 181.60 . AS_QUALapprox=|189|0;AS_VarDP=26|13|0;BaseQRankSum=-0.061;DP=54;MQRankSum=-1.360;QUALapprox=189;RAW_GT_COUNT=0,1,0;RAW_MQandDP=192400,54;ReadPosRankSum=-1.476;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:26,13,0:39:99:189,0,448,265,486,752:14,12,6,7 +chrX 1871078 . T . . END=1871510 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,99,1405 +chrX 1871511 . G A, 2276.06 . AS_QUALapprox=|2290|0;AS_VarDP=0|72|0;DP=74;QUALapprox=2290;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;VarDP=72 GT:AD:DP:GQ:PL:SB 1/1:0,72,0:72:99:2290,216,0,2290,216,2290:0,0,34,38 +chrX 1871512 . A . . END=1871707 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1871708 . A C, 2342.06 . AS_QUALapprox=|2356|0;AS_VarDP=0|74|0;DP=76;QUALapprox=2356;RAW_GT_COUNT=0,0,1;RAW_MQandDP=272025,76;VarDP=74 GT:AD:DP:GQ:PL:SB 1/1:0,74,0:74:99:2356,221,0,2356,221,2356:0,0,42,32 +chrX 1871709 . G . . END=1872173 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,119,1800 +chrX 1872174 . A T, 1836.06 . AS_QUALapprox=|1850|0;AS_VarDP=0|57|0;DP=59;QUALapprox=1850;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1850,171,0,1850,171,1850:0,0,27,30 +chrX 1872175 . T . . END=1872243 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,118,1509 +chrX 1872244 . AT A, 1051.03 . AS_QUALapprox=|1065|0;AS_VarDP=1|42|0;DP=53;MQRankSum=6.635;QUALapprox=1065;RAW_GT_COUNT=0,0,1;RAW_MQandDP=186964,53;VarDP=43 GT:AD:DP:GQ:PL:SB 1/1:1,42,0:43:99:1065,105,0,1068,126,1089:0,1,15,27 +chrX 1872246 . T . . END=1873151 GT:DP:GQ:MIN_DP:PL 0/0:53:76:53:0,76,1341 +chrX 1873152 . G A, 1514.06 . AS_QUALapprox=|1528|0;AS_VarDP=1|46|0;BaseQRankSum=2.804;DP=49;MQRankSum=0.000;QUALapprox=1528;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;ReadPosRankSum=1.290;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:1,46,0:47:99:1528,131,0,1531,138,1538:0,1,23,23 +chrX 1873153 . C . . END=1873475 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,107,1524 +chrX 1873476 . A G, 505.64 . AS_QUALapprox=|513|0;AS_VarDP=24|20|0;BaseQRankSum=0.611;DP=44;MQRankSum=0.000;QUALapprox=513;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=-0.035;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:24,20,0:44:99:513,0,622,585,682,1267:10,14,13,7 +chrX 1873477 . G . . END=1873736 GT:DP:GQ:MIN_DP:PL 0/0:35:26:31:0,26,857 +chrX 1873737 . T . . END=1873737 GT:DP:GQ:MIN_DP:PL 0/0:32:12:32:0,12,833 +chrX 1873738 . C . . END=1873738 GT:DP:GQ:MIN_DP:PL 0/0:30:30:30:0,30,833 +chrX 1873739 . T . . END=1873740 GT:DP:GQ:MIN_DP:PL 0/0:30:6:30:0,6,754 +chrX 1873741 . T . . END=1873746 GT:DP:GQ:MIN_DP:PL 0/0:28:22:27:0,22,630 +chrX 1873747 . C . . END=1873747 GT:DP:GQ:MIN_DP:PL 0/0:26:0:26:0,0,685 +chrX 1873748 . C . . END=1873795 GT:DP:GQ:MIN_DP:PL 0/0:21:28:21:0,28,546 +chrX 1873796 . A . . END=1873797 GT:DP:GQ:MIN_DP:PL 0/0:20:0:20:0,0,293 +chrX 1873798 . T . . END=1873801 GT:DP:GQ:MIN_DP:PL 0/0:20:25:20:0,25,605 +chrX 1873802 . C . . END=1873802 GT:DP:GQ:MIN_DP:PL 0/0:19:0:19:0,0,411 +chrX 1873803 . T . . END=1873804 GT:DP:GQ:MIN_DP:PL 0/0:19:48:19:0,48,720 +chrX 1873805 . T . . END=1873805 GT:DP:GQ:MIN_DP:PL 0/0:20:0:20:0,0,556 +chrX 1873806 . C . . END=1873806 GT:DP:GQ:MIN_DP:PL 0/0:20:51:20:0,51,765 +chrX 1873807 . T . . END=1873809 GT:DP:GQ:MIN_DP:PL 0/0:20:0:20:0,0,471 +chrX 1873810 . C . . END=1874673 GT:DP:GQ:MIN_DP:PL 0/0:18:24:14:0,24,436 +chrX 1874674 . T . . END=1874674 GT:DP:GQ:MIN_DP:PL 0/0:56:15:56:0,15,1499 +chrX 1874675 . CTTTTT C,CT, 676.02 . AS_QUALapprox=|498|608|0;AS_VarDP=2|8|12|0;BaseQRankSum=-0.743;DP=58;MQRankSum=0.000;QUALapprox=693;RAW_GT_COUNT=0,0,1;RAW_MQandDP=196170,58;ReadPosRankSum=0.248;VarDP=22 GT:AD:DP:GQ:PL:SB 1/2:2,8,12,0:22:85:693,195,359,100,0,85,563,332,166,634:1,1,4,16 +chrX 1874681 . T . . END=1875453 GT:DP:GQ:MIN_DP:PL 0/0:52:69:52:0,69,1035 +chrX 1875454 . T C, 1990.06 . AS_QUALapprox=|2004|0;AS_VarDP=0|63|0;DP=64;QUALapprox=2004;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=63 GT:AD:DP:GQ:PL:SB 1/1:0,63,0:63:99:2004,189,0,2004,189,2004:0,0,42,21 +chrX 1875455 . G . . END=1875576 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,117,1713 +chrX 1875577 . A G, 1555.06 . AS_QUALapprox=|1569|0;AS_VarDP=0|51|0;DP=52;QUALapprox=1569;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1569,152,0,1569,152,1569:0,0,27,24 +chrX 1875578 . G . . END=1876769 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,100,1306 +chrX 1876770 . T C, 1798.06 . AS_QUALapprox=|1812|0;AS_VarDP=0|57|0;DP=61;QUALapprox=1812;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1812,171,0,1812,171,1812:0,0,24,33 +chrX 1876771 . G . . END=1877383 GT:DP:GQ:MIN_DP:PL 0/0:54:73:54:0,73,1451 +chrX 1877384 . C CT, 857.02 . AS_QUALapprox=|871|0;AS_VarDP=3|36|0;BaseQRankSum=-0.866;DP=55;MQRankSum=0.000;QUALapprox=871;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194976,55;ReadPosRankSum=0.976;VarDP=39 GT:AD:DP:GQ:PL:SB 1/1:3,36,0:39:37:871,37,0,881,108,951:2,1,19,17 +chrX 1877385 . T . . END=1877738 GT:DP:GQ:MIN_DP:PL 0/0:66:86:66:0,86,1366 +chrX 1877739 . T C, 1980.06 . AS_QUALapprox=|1994|0;AS_VarDP=0|61|0;DP=61;QUALapprox=1994;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=61 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:1994,183,0,1994,183,1994:0,0,30,31 +chrX 1877740 . G . . END=1878082 GT:DP:GQ:MIN_DP:PL 0/0:61:56:61:0,56,1350 +chrX 1878083 . C CA, 715.03 . AS_QUALapprox=|729|0;AS_VarDP=0|34|0;DP=48;QUALapprox=729;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=34 GT:AD:DP:GQ:PL:SB 1/1:0,34,0:34:99:729,100,0,729,100,729:0,0,20,14 +chrX 1878084 . A . . END=1878546 GT:DP:GQ:MIN_DP:PL 0/0:53:76:53:0,76,1210 +chrX 1878547 . C T, 2270.06 . AS_QUALapprox=|2284|0;AS_VarDP=0|68|0;DP=72;QUALapprox=2284;RAW_GT_COUNT=0,0,1;RAW_MQandDP=258100,72;VarDP=68 GT:AD:DP:GQ:PL:SB 1/1:0,68,0:68:99:2284,204,0,2284,204,2284:0,0,40,28 +chrX 1878548 . G . . END=1878670 GT:DP:GQ:MIN_DP:PL 0/0:77:99:77:0,120,1800 +chrX 1878671 . C T, 2582.06 . AS_QUALapprox=|2596|0;AS_VarDP=0|81|0;DP=82;QUALapprox=2596;RAW_GT_COUNT=0,0,1;RAW_MQandDP=293525,82;VarDP=81 GT:AD:DP:GQ:PL:SB 1/1:0,81,0:81:99:2596,243,0,2596,243,2596:0,0,43,38 +chrX 1878672 . T . . END=1878901 GT:DP:GQ:MIN_DP:PL 0/0:44:24:31:0,24,939 +chrX 1878902 . T . . END=1878902 GT:DP:GQ:MIN_DP:PL 0/0:32:2:32:0,2,863 +chrX 1878903 . A . . END=1878908 GT:DP:GQ:MIN_DP:PL 0/0:35:28:34:0,28,1004 +chrX 1878909 . T . . END=1878909 GT:DP:GQ:MIN_DP:PL 0/0:35:11:35:0,11,998 +chrX 1878910 . G . . END=1878910 GT:DP:GQ:MIN_DP:PL 0/0:38:75:38:0,75,1182 +chrX 1878911 . G . . END=1878911 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,919 +chrX 1878912 . T . . END=1878912 GT:DP:GQ:MIN_DP:PL 0/0:33:60:33:0,60,978 +chrX 1878913 . C . . END=1878915 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,233 +chrX 1878916 . A . . END=1879604 GT:DP:GQ:MIN_DP:PL 0/0:60:58:60:0,58,1172 +chrX 1879605 . T C, 1802.06 . AS_QUALapprox=|1816|0;AS_VarDP=0|57|0;DP=58;QUALapprox=1816;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1816,171,0,1816,171,1816:0,0,28,29 +chrX 1879606 . G . . END=1880172 GT:DP:GQ:MIN_DP:PL 0/0:59:39:46:0,39,932 +chrX 1880173 . CATAATA C, 2635.03 . AS_QUALapprox=|2649|0;AS_VarDP=0|59|0;DP=64;QUALapprox=2649;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:2649,178,0,2649,178,2649:0,0,29,30 +chrX 1880180 . A . . END=1880216 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 1880217 . C CA, 2437.03 . AS_QUALapprox=|2451|0;AS_VarDP=0|67|0;DP=70;QUALapprox=2451;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;VarDP=67 GT:AD:DP:GQ:PL:SB 1/1:0,67,0:67:99:2451,201,0,2451,201,2451:0,0,35,32 +chrX 1880218 . A . . END=1880581 GT:DP:GQ:MIN_DP:PL 0/0:57:43:57:0,43,1800 +chrX 1880582 . C T, 2284.06 . AS_QUALapprox=|2298|0;AS_VarDP=1|71|0;BaseQRankSum=2.482;DP=74;MQRankSum=0.000;QUALapprox=2298;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;ReadPosRankSum=-0.120;VarDP=72 GT:AD:DP:GQ:PL:SB 1/1:1,71,0:72:99:2298,206,0,2301,213,2308:1,0,41,30 +chrX 1880583 . G . . END=1880727 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,113,1658 +chrX 1880728 . T C, 541.64 . AS_QUALapprox=|549|0;AS_VarDP=26|21|0;BaseQRankSum=0.094;DP=49;MQRankSum=0.000;QUALapprox=549;RAW_GT_COUNT=0,1,0;RAW_MQandDP=175300,49;ReadPosRankSum=-0.096;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:26,21,0:47:99:549,0,698,627,761,1388:14,12,10,11 +chrX 1880729 . T . . END=1880890 GT:DP:GQ:MIN_DP:PL 0/0:47:49:47:0,49,1058 +chrX 1880891 . GGAAA G, 634.60 . AS_QUALapprox=|642|0;AS_VarDP=24|17|0;BaseQRankSum=0.675;DP=47;MQRankSum=0.000;QUALapprox=642;RAW_GT_COUNT=0,1,0;RAW_MQandDP=167904,47;ReadPosRankSum=1.820;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:24,17,0:41:99:642,0,922,714,973,1687:16,8,11,6 +chrX 1880896 . G . . END=1880908 GT:DP:GQ:MIN_DP:PL 0/0:42:92:42:0,92,1195 +chrX 1880909 . CAAGA C, 631.60 . AS_QUALapprox=|639|0;AS_VarDP=25|17|0;BaseQRankSum=1.138;DP=48;MQRankSum=0.000;QUALapprox=639;RAW_GT_COUNT=0,1,0;RAW_MQandDP=171504,48;ReadPosRankSum=1.033;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:25,17,0:42:99:639,0,959,714,1010,1724:16,9,11,6 +chrX 1880914 . A . . END=1880917 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,120,1800 +chrX 1880918 . AAG A, 937.60 . AS_QUALapprox=|945|0;AS_VarDP=19|25|0;BaseQRankSum=0.000;DP=47;MQRankSum=0.000;QUALapprox=945;RAW_GT_COUNT=0,1,0;RAW_MQandDP=167904,47;ReadPosRankSum=-1.327;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:19,25,0:44:99:945,0,715,1002,790,1792:11,8,16,9 +chrX 1880921 . A . . END=1880942 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,115,1429 +chrX 1880943 . AGGAAGGAG A, 1737.03 . AS_QUALapprox=|1751|0;AS_VarDP=1|41|0;BaseQRankSum=-0.462;DP=54;MQRankSum=0.000;QUALapprox=1751;RAW_GT_COUNT=0,0,1;RAW_MQandDP=193104,54;ReadPosRankSum=-1.032;VarDP=42 GT:AD:DP:GQ:PL:SB 1/1:1,41,0:42:82:1751,82,0,1754,124,1796:0,1,26,15 +chrX 1880952 . G . . END=1881173 GT:DP:GQ:MIN_DP:PL 0/0:47:26:36:0,26,945 +chrX 1881174 . T . . END=1881174 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,917 +chrX 1881175 . A . . END=1881208 GT:DP:GQ:MIN_DP:PL 0/0:51:82:51:0,82,1255 +chrX 1881209 . G GGAA, 1129.60 . AS_QUALapprox=|1137|0;AS_VarDP=20|29|0;BaseQRankSum=-0.226;DP=51;MQRankSum=-1.157;QUALapprox=1137;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180761,51;ReadPosRankSum=0.824;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:20,29,0:49:99:1137,0,752,1197,839,2036:11,9,15,14 +chrX 1881210 . G . . END=1881423 GT:DP:GQ:MIN_DP:PL 0/0:30:21:17:0,21,405 +chrX 1881424 . C . . END=1881425 GT:DP:GQ:MIN_DP:PL 0/0:15:0:15:0,0,274 +chrX 1881426 . G . . END=1881427 GT:DP:GQ:MIN_DP:PL 0/0:15:30:15:0,30,450 +chrX 1881428 . G . . END=1881430 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,243 +chrX 1881431 . A . . END=1881431 GT:DP:GQ:MIN_DP:PL 0/0:13:27:13:0,27,405 +chrX 1881432 . G . . END=1881433 GT:DP:GQ:MIN_DP:PL 0/0:13:0:13:0,0,223 +chrX 1881434 . G . . END=1881440 GT:DP:GQ:MIN_DP:PL 0/0:14:27:13:0,27,405 +chrX 1881441 . G . . END=1881441 GT:DP:GQ:MIN_DP:PL 0/0:11:8:11:0,8,323 +chrX 1881442 . G . . END=1881442 GT:DP:GQ:MIN_DP:PL 0/0:11:27:11:0,27,405 +chrX 1881443 . A . . END=1881443 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,313 +chrX 1881444 . A . . END=1881446 GT:DP:GQ:MIN_DP:PL 0/0:11:27:11:0,27,405 +chrX 1881447 . A . . END=1881449 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,292 +chrX 1881450 . G . . END=1881468 GT:DP:GQ:MIN_DP:PL 0/0:11:27:11:0,27,307 +chrX 1881469 . C . . END=1881469 GT:DP:GQ:MIN_DP:PL 0/0:10:5:10:0,5,258 +chrX 1881470 . G . . END=1881487 GT:DP:GQ:MIN_DP:PL 0/0:11:30:11:0,30,331 +chrX 1881488 . C . . END=1881488 GT:DP:GQ:MIN_DP:PL 0/0:10:15:10:0,15,258 +chrX 1881489 . A . . END=1881493 GT:DP:GQ:MIN_DP:PL 0/0:11:27:9:0,27,262 +chrX 1881494 . A . . END=1881494 GT:DP:GQ:MIN_DP:PL 0/0:11:4:11:0,4,223 +chrX 1881495 . A . . END=1881532 GT:DP:GQ:MIN_DP:PL 0/0:23:20:12:0,20,387 +chrX 1881533 . C . . END=1881533 GT:DP:GQ:MIN_DP:PL 0/0:21:14:21:0,14,551 +chrX 1881534 . G . . END=1881604 GT:DP:GQ:MIN_DP:PL 0/0:26:22:24:0,22,553 +chrX 1881605 . T . . END=1881605 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,155 +chrX 1881606 . G . . END=1881612 GT:DP:GQ:MIN_DP:PL 0/0:35:91:35:0,91,1067 +chrX 1881613 . G . . END=1881613 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,446 +chrX 1881614 . G . . END=1881614 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,102,1530 +chrX 1881615 . A . . END=1881615 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,426 +chrX 1881616 . A . . END=1881618 GT:DP:GQ:MIN_DP:PL 0/0:36:89:36:0,89,1161 +chrX 1881619 . A . . END=1881619 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,301 +chrX 1881620 . A . . END=1881801 GT:DP:GQ:MIN_DP:PL 0/0:60:67:60:0,67,1044 +chrX 1881802 . T C, 646.64 . AS_QUALapprox=|654|0;AS_VarDP=39|26|0;BaseQRankSum=0.231;DP=67;MQRankSum=0.000;QUALapprox=654;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=-0.469;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:39,26,0:65:99:654,0,1045,770,1123,1894:25,14,16,10 +chrX 1881803 . C . . END=1881877 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 1881878 . T C, 454.64 . AS_QUALapprox=|462|0;AS_VarDP=34|19|0;BaseQRankSum=0.545;DP=54;MQRankSum=0.000;QUALapprox=462;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=-0.984;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:34,19,0:53:99:462,0,902,563,959,1522:25,9,11,8 +chrX 1881879 . A . . END=1882338 GT:DP:GQ:MIN_DP:PL 0/0:61:96:61:0,96,1490 +chrX 1882339 . C CTTT, 649.60 . AS_QUALapprox=|657|0;AS_VarDP=23|18|0;BaseQRankSum=1.144;DP=51;MQRankSum=0.000;QUALapprox=657;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=0.053;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:23,18,0:41:99:657,0,875,726,929,1655:12,11,13,5 +chrX 1882340 . T . . END=1882364 GT:DP:GQ:MIN_DP:PL 0/0:44:73:44:0,73,962 +chrX 1882365 . C G, 323.64 . AS_QUALapprox=|331|0;AS_VarDP=25|17|0;BaseQRankSum=-1.931;DP=48;MQRankSum=0.000;QUALapprox=331;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=-0.128;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:25,17,0:42:99:331,0,650,405,699,1105:13,12,12,5 +chrX 1882366 . C . . END=1882695 GT:DP:GQ:MIN_DP:PL 0/0:71:64:71:0,64,1270 +chrX 1882696 . G A, 884.64 . AS_QUALapprox=|892|0;AS_VarDP=36|34|0;BaseQRankSum=0.232;DP=73;MQRankSum=0.000;QUALapprox=892;RAW_GT_COUNT=0,1,0;RAW_MQandDP=262800,73;ReadPosRankSum=-1.569;VarDP=70 GT:AD:DP:GQ:PL:SB 0/1:36,34,0:70:99:892,0,952,1000,1054,2053:19,17,14,20 +chrX 1882697 . T . . END=1882835 GT:DP:GQ:MIN_DP:PL 0/0:77:99:77:0,120,1800 +chrX 1882836 . C T, 2230.06 . AS_QUALapprox=|2244|0;AS_VarDP=0|66|0;DP=67;QUALapprox=2244;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190643,67;VarDP=66 GT:AD:DP:GQ:PL:SB 1/1:0,66,0:66:99:2244,199,0,2244,199,2244:0,0,27,39 +chrX 1882837 . A . . END=1883447 GT:DP:GQ:MIN_DP:PL 0/0:64:94:64:0,94,1333 +chrX 1883448 . C T, 600.64 . AS_QUALapprox=|608|0;AS_VarDP=27|22|0;BaseQRankSum=3.973;DP=51;MQRankSum=0.000;QUALapprox=608;RAW_GT_COUNT=0,1,0;RAW_MQandDP=182209,51;ReadPosRankSum=2.142;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:27,22,0:49:99:608,0,631,689,697,1386:11,16,11,11 +chrX 1883449 . G . . END=1884022 GT:DP:GQ:MIN_DP:PL 0/0:55:91:55:0,91,1310 +chrX 1884023 . C T, 790.64 . AS_QUALapprox=|798|0;AS_VarDP=35|30|0;BaseQRankSum=1.178;DP=65;MQRankSum=0.000;QUALapprox=798;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=-0.257;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:35,30,0:65:99:798,0,906,902,996,1899:23,12,15,15 +chrX 1884024 . G . . END=1884060 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1884061 . TG T, 948.60 . AS_QUALapprox=|956|0;AS_VarDP=31|28|0;BaseQRankSum=-0.831;DP=61;MQRankSum=0.000;QUALapprox=956;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=0.144;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:31,28,0:59:99:956,0,1051,1049,1135,2184:19,12,13,15 +chrX 1884063 . C . . END=1884090 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,115,1588 +chrX 1884091 . C G, 633.64 . AS_QUALapprox=|641|0;AS_VarDP=24|25|0;BaseQRankSum=-2.019;DP=53;MQRankSum=0.000;QUALapprox=641;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=-0.610;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:24,25,0:49:99:641,0,666,714,741,1455:15,9,10,15 +chrX 1884092 . T . . END=1884813 GT:DP:GQ:MIN_DP:PL 0/0:60:52:60:0,52,1359 +chrX 1884814 . C T, 881.64 . AS_QUALapprox=|889|0;AS_VarDP=32|31|0;BaseQRankSum=2.526;DP=65;MQRankSum=0.000;QUALapprox=889;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=0.241;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:32,31,0:63:99:889,0,846,984,939,1923:14,18,16,15 +chrX 1884815 . C . . END=1885115 GT:DP:GQ:MIN_DP:PL 0/0:55:79:55:0,79,1240 +chrX 1885116 . CA C, 450.60 . AS_QUALapprox=|458|0;AS_VarDP=16|24|0;BaseQRankSum=-0.647;DP=51;MQRankSum=0.000;QUALapprox=458;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=0.080;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:16,24,0:40:99:458,0,269,506,341,846:6,10,12,12 +chrX 1885118 . A . . END=1885320 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,100,1612 +chrX 1885321 . TG T, 1194.60 . AS_QUALapprox=|1202|0;AS_VarDP=24|37|0;BaseQRankSum=0.541;DP=64;MQRankSum=0.000;QUALapprox=1202;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=0.502;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:24,37,0:61:99:1202,0,699,1274,811,2085:10,14,17,20 +chrX 1885323 . G . . END=1886324 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,103,1449 +chrX 1886325 . T G, 774.64 . AS_QUALapprox=|782|0;AS_VarDP=31|31|0;BaseQRankSum=-0.349;DP=64;MQRankSum=0.046;QUALapprox=782;RAW_GT_COUNT=0,1,0;RAW_MQandDP=228713,64;ReadPosRankSum=0.387;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:31,31,0:62:99:782,0,807,875,900,1774:16,15,11,20 +chrX 1886326 . G . . END=1886445 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,112,1462 +chrX 1886446 . G A, 545.64 . AS_QUALapprox=|553|0;AS_VarDP=28|21|0;BaseQRankSum=0.347;DP=50;MQRankSum=0.000;QUALapprox=553;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=0.819;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:28,21,0:49:99:553,0,775,637,839,1475:14,14,16,5 +chrX 1886447 . C . . END=1886553 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,101,1468 +chrX 1886554 . CTTG C, 1198.60 . AS_QUALapprox=|1206|0;AS_VarDP=18|30|0;BaseQRankSum=1.092;DP=53;MQRankSum=0.000;QUALapprox=1206;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=-0.767;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:18,30,0:48:99:1206,0,665,1260,756,2016:8,10,14,16 +chrX 1886558 . T . . END=1886919 GT:DP:GQ:MIN_DP:PL 0/0:50:73:50:0,73,1107 +chrX 1886920 . G C, 1975.06 . AS_QUALapprox=|1989|0;AS_VarDP=0|64|0;DP=66;QUALapprox=1989;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=64 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:1989,191,0,1989,191,1989:0,0,30,34 +chrX 1886921 . G . . END=1887049 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1887050 . C CT, 260.60 . AS_QUALapprox=|268|0;AS_VarDP=23|16|0;BaseQRankSum=-0.145;DP=48;MQRankSum=0.000;QUALapprox=268;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=-0.243;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:23,16,0:39:99:268,0,448,337,496,833:13,10,6,10 +chrX 1887051 . T . . END=1887555 GT:DP:GQ:MIN_DP:PL 0/0:55:64:55:0,64,838 +chrX 1887556 . C . . END=1887556 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,583 +chrX 1887557 . C . . END=1887560 GT:DP:GQ:MIN_DP:PL 0/0:31:72:31:0,72,1080 +chrX 1887561 . C . . END=1887563 GT:DP:GQ:MIN_DP:PL 0/0:26:0:26:0,0,481 +chrX 1887564 . C . . END=1887602 GT:DP:GQ:MIN_DP:PL 0/0:18:22:14:0,22,405 +chrX 1887603 . T . . END=1887603 GT:DP:GQ:MIN_DP:PL 0/0:14:7:14:0,7,417 +chrX 1887604 . G . . END=1887604 GT:DP:GQ:MIN_DP:PL 0/0:14:27:14:0,27,405 +chrX 1887605 . G . . END=1887609 GT:DP:GQ:MIN_DP:PL 0/0:13:4:13:0,4,348 +chrX 1887610 . T . . END=1887636 GT:DP:GQ:MIN_DP:PL 0/0:15:20:12:0,20,342 +chrX 1887637 . A . . END=1887637 GT:DP:GQ:MIN_DP:PL 0/0:15:0:15:0,0,322 +chrX 1887638 . C . . END=1887735 GT:DP:GQ:MIN_DP:PL 0/0:17:36:13:0,36,371 +chrX 1887736 . C . . END=1887736 GT:DP:GQ:MIN_DP:PL 0/0:17:16:17:0,16,481 +chrX 1887737 . A . . END=1887741 GT:DP:GQ:MIN_DP:PL 0/0:17:22:17:0,22,453 +chrX 1887742 . G . . END=1887742 GT:DP:GQ:MIN_DP:PL 0/0:18:19:18:0,19,506 +chrX 1887743 . A . . END=1887751 GT:DP:GQ:MIN_DP:PL 0/0:19:33:16:0,33,495 +chrX 1887752 . T . . END=1887752 GT:DP:GQ:MIN_DP:PL 0/0:16:13:16:0,13,487 +chrX 1887753 . G . . END=1887766 GT:DP:GQ:MIN_DP:PL 0/0:13:21:11:0,21,315 +chrX 1887767 . G . . END=1887767 GT:DP:GQ:MIN_DP:PL 0/0:9:18:9:0,18,270 +chrX 1887768 . C . . END=1887768 GT:DP:GQ:MIN_DP:PL 0/0:10:21:10:0,21,315 +chrX 1887769 . C . . END=1887786 GT:DP:GQ:MIN_DP:PL 0/0:7:10:7:0,10,174 +chrX 1887787 . T . . END=1887847 GT:DP:GQ:MIN_DP:PL 0/0:10:21:8:0,21,223 +chrX 1887848 . T . . END=1887848 GT:DP:GQ:MIN_DP:PL 0/0:10:16:10:0,16,228 +chrX 1887849 . C . . END=1887854 GT:DP:GQ:MIN_DP:PL 0/0:10:24:10:0,24,207 +chrX 1887855 . T . . END=1887855 GT:DP:GQ:MIN_DP:PL 0/0:9:2:9:0,2,183 +chrX 1887856 . G . . END=1887857 GT:DP:GQ:MIN_DP:PL 0/0:8:24:8:0,24,197 +chrX 1887858 . G . . END=1887858 GT:DP:GQ:MIN_DP:PL 0/0:5:15:5:0,15,123 +chrX 1887859 . G . . END=1887866 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,173 +chrX 1887867 . T . . END=1887867 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,168 +chrX 1887868 . T . . END=1887868 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,315 +chrX 1887869 . G . . END=1887871 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,138 +chrX 1887872 . T . . END=1887873 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,315 +chrX 1887874 . A . . END=1887874 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,148 +chrX 1887875 . C . . END=1887875 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,315 +chrX 1887876 . A . . END=1887876 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,138 +chrX 1887877 . C . . END=1887882 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,183 +chrX 1887883 . C . . END=1887883 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,158 +chrX 1887884 . C . . END=1887884 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,193 +chrX 1887885 . A . . END=1887885 GT:DP:GQ:MIN_DP:PL 0/0:6:0:6:0,0,129 +chrX 1887886 . G . . END=1887891 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,203 +chrX 1887892 . C . . END=1887893 GT:DP:GQ:MIN_DP:PL 0/0:7:0:7:0,0,119 +chrX 1887894 . T . . END=1887895 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,183 +chrX 1887896 . A . . END=1887900 GT:DP:GQ:MIN_DP:PL 0/0:6:0:6:0,0,109 +chrX 1887901 . C . . END=1887917 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,183 +chrX 1887918 . G . . END=1888271 GT:DP:GQ:MIN_DP:PL 0/0:2:0:2:0,0,0 +chrX 1888272 . C . . END=1888318 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,233 +chrX 1888319 . A . . END=1888319 GT:DP:GQ:MIN_DP:PL 0/0:9:2:9:0,2,223 +chrX 1888320 . C . . END=1890826 GT:DP:GQ:MIN_DP:PL 0/0:12:21:8:0,21,233 +chrX 1890827 . C T, 755.64 . AS_QUALapprox=|763|0;AS_VarDP=32|28|0;BaseQRankSum=0.566;DP=60;MQRankSum=0.000;QUALapprox=763;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=1.356;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:32,28,0:60:99:763,0,882,859,966,1825:18,14,19,9 +chrX 1890828 . G . . END=1891508 GT:DP:GQ:MIN_DP:PL 0/0:52:68:52:0,68,1157 +chrX 1891509 . A . . END=1891509 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,368 +chrX 1891510 . TC T, 335.60 . AS_QUALapprox=|343|0;AS_VarDP=5|15|0;BaseQRankSum=1.358;DP=30;MQRankSum=2.600;QUALapprox=343;RAW_GT_COUNT=0,1,0;RAW_MQandDP=100340,30;ReadPosRankSum=1.267;VarDP=20 GT:AD:DP:GQ:PL:SB 0/1:5,15,0:20:27:343,0,27,357,72,429:5,0,0,15 +chrX 1891512 . C . . END=1891541 GT:DP:GQ:MIN_DP:PL 0/0:22:22:19:0,22,530 +chrX 1891542 . T C, 858.06 . AS_QUALapprox=|872|0;AS_VarDP=0|28|0;DP=29;QUALapprox=872;RAW_GT_COUNT=0,0,1;RAW_MQandDP=101584,29;VarDP=28 GT:AD:DP:GQ:PL:SB 1/1:0,28,0:28:83:872,83,0,872,83,872:0,0,5,23 +chrX 1891543 . G . . END=1891809 GT:DP:GQ:MIN_DP:PL 0/0:35:21:31:0,21,923 +chrX 1891810 . C T, 1519.06 . AS_QUALapprox=|1533|0;AS_VarDP=0|45|0;DP=46;QUALapprox=1533;RAW_GT_COUNT=0,0,1;RAW_MQandDP=163600,46;VarDP=45 GT:AD:DP:GQ:PL:SB 1/1:0,45,0:45:99:1533,135,0,1533,135,1533:0,0,22,23 +chrX 1891811 . G . . END=1891833 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,120,1800 +chrX 1891834 . C G, 1474.06 . AS_QUALapprox=|1488|0;AS_VarDP=0|46|0;DP=49;QUALapprox=1488;RAW_GT_COUNT=0,0,1;RAW_MQandDP=174400,49;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1488,137,0,1488,137,1488:0,0,22,24 +chrX 1891835 . T . . END=1891879 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,118,1370 +chrX 1891880 . C T, 368.64 . AS_QUALapprox=|376|0;AS_VarDP=34|16|0;BaseQRankSum=0.210;DP=51;MQRankSum=0.729;QUALapprox=376;RAW_GT_COUNT=0,1,0;RAW_MQandDP=181936,51;ReadPosRankSum=0.915;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:34,16,0:50:99:376,0,946,478,994,1472:20,14,6,10 +chrX 1891881 . A . . END=1892588 GT:DP:GQ:MIN_DP:PL 0/0:52:63:52:0,63,922 +chrX 1892589 . AT A, 1728.03 . AS_QUALapprox=|1742|0;AS_VarDP=0|56|0;DP=63;QUALapprox=1742;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1742,168,0,1742,168,1742:0,0,29,27 +chrX 1892591 . T . . END=1892853 GT:DP:GQ:MIN_DP:PL 0/0:59:24:56:0,24,1407 +chrX 1892854 . C CTT, 637.60 . AS_QUALapprox=|645|0;AS_VarDP=15|25|0;BaseQRankSum=0.805;DP=64;MQRankSum=-0.723;QUALapprox=645;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226564,64;ReadPosRankSum=-0.768;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:15,25,0:40:99:645,0,393,690,467,1158:4,11,14,11 +chrX 1892855 . T . . END=1893101 GT:DP:GQ:MIN_DP:PL 0/0:55:55:55:0,55,1371 +chrX 1893102 . C T, 887.64 . AS_QUALapprox=|895|0;AS_VarDP=36|33|0;BaseQRankSum=1.653;DP=71;MQRankSum=1.385;QUALapprox=895;RAW_GT_COUNT=0,1,0;RAW_MQandDP=254232,71;ReadPosRankSum=0.547;VarDP=69 GT:AD:DP:GQ:PL:SB 0/1:36,33,0:69:99:895,0,954,1003,1053,2056:20,16,18,15 +chrX 1893103 . A . . END=1893194 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1893195 . ATTT A, 945 . AS_QUALapprox=|959|0;AS_VarDP=5|33|0;BaseQRankSum=-1.471;DP=59;MQRankSum=2.647;QUALapprox=959;RAW_GT_COUNT=0,0,1;RAW_MQandDP=210400,59;ReadPosRankSum=0.907;VarDP=38 GT:AD:DP:GQ:PL:SB 1/1:5,33,0:38:24:959,24,0,972,97,1046:5,0,9,24 +chrX 1893199 . T . . END=1893215 GT:DP:GQ:MIN_DP:PL 0/0:47:71:47:0,71,1384 +chrX 1893216 . G . . END=1893216 GT:DP:GQ:MIN_DP:PL 0/0:50:0:50:0,0,1239 +chrX 1893217 . T . . END=1893217 GT:DP:GQ:MIN_DP:PL 0/0:48:40:48:0,40,1349 +chrX 1893218 . A . . END=1893218 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,1054 +chrX 1893219 . T . . END=1893235 GT:DP:GQ:MIN_DP:PL 0/0:41:91:41:0,91,1295 +chrX 1893236 . G T, 663.64 . AS_QUALapprox=|671|0;AS_VarDP=17|25|0;BaseQRankSum=-1.346;DP=45;MQRankSum=0.000;QUALapprox=671;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=0.487;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:17,25,0:42:99:671,0,427,722,502,1224:6,11,11,14 +chrX 1893237 . T . . END=1893321 GT:DP:GQ:MIN_DP:PL 0/0:46:97:46:0,97,1224 +chrX 1893322 . G A, 537.64 . AS_QUALapprox=|545|0;AS_VarDP=30|20|0;BaseQRankSum=2.128;DP=54;MQRankSum=0.857;QUALapprox=545;RAW_GT_COUNT=0,1,0;RAW_MQandDP=192400,54;ReadPosRankSum=1.298;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:30,20,0:50:99:545,0,832,635,892,1528:12,18,10,10 +chrX 1893323 . T . . END=1893428 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,101,1569 +chrX 1893429 . G A, 647.64 . AS_QUALapprox=|655|0;AS_VarDP=30|26|0;BaseQRankSum=-0.610;DP=58;MQRankSum=0.000;QUALapprox=655;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=0.674;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:30,26,0:56:99:655,0,804,745,882,1628:14,16,11,15 +chrX 1893430 . G . . END=1893552 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1893553 . G A, 827.64 . AS_QUALapprox=|835|0;AS_VarDP=29|30|0;BaseQRankSum=0.460;DP=60;MQRankSum=0.000;QUALapprox=835;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=-0.114;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:29,30,0:59:99:835,0,791,923,881,1803:16,13,18,12 +chrX 1893554 . T . . END=1894264 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,109,1410 +chrX 1894265 . GTC G, 1651.03 . AS_QUALapprox=|1665|0;AS_VarDP=0|43|0;DP=48;QUALapprox=1665;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=43 GT:AD:DP:GQ:PL:SB 1/1:0,43,0:43:99:1665,130,0,1665,130,1665:0,0,19,24 +chrX 1894268 . T . . END=1894344 GT:DP:GQ:MIN_DP:PL 0/0:48:73:48:0,73,1236 +chrX 1894345 . G A, 1155.06 . AS_QUALapprox=|1169|0;AS_VarDP=1|37|0;BaseQRankSum=2.245;DP=43;MQRankSum=0.000;QUALapprox=1169;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154800,43;ReadPosRankSum=0.456;VarDP=38 GT:AD:DP:GQ:PL:SB 1/1:1,37,0:38:99:1169,103,0,1171,110,1178:0,1,18,19 +chrX 1894346 . C . . END=1894362 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,105,1106 +chrX 1894363 . A . . END=1894363 GT:DP:GQ:MIN_DP:PL 0/0:40:19:40:0,19,957 +chrX 1894364 . T . . END=1894403 GT:DP:GQ:MIN_DP:PL 0/0:37:91:37:0,91,1066 +chrX 1894404 . C T, 1404.06 . AS_QUALapprox=|1418|0;AS_VarDP=0|42|0;DP=42;QUALapprox=1418;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151200,42;VarDP=42 GT:AD:DP:GQ:PL:SB 1/1:0,42,0:42:99:1418,126,0,1418,126,1418:0,0,23,19 +chrX 1894405 . T . . END=1894503 GT:DP:GQ:MIN_DP:PL 0/0:42:44:42:0,44,953 +chrX 1894504 . C . . END=1894507 GT:DP:GQ:MIN_DP:PL 0/0:35:12:35:0,12,1338 +chrX 1894508 . C . . END=1894547 GT:DP:GQ:MIN_DP:PL 0/0:29:35:26:0,35,707 +chrX 1894548 . GTCTC G, 1247.03 . AS_QUALapprox=|1261|0;AS_VarDP=0|29|0;DP=35;QUALapprox=1261;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=29 GT:AD:DP:GQ:PL:SB 1/1:0,29,0:29:87:1261,87,0,1261,87,1261:0,0,12,17 +chrX 1894553 . T . . END=1894665 GT:DP:GQ:MIN_DP:PL 0/0:40:24:35:0,24,872 +chrX 1894666 . A T, 1200.06 . AS_QUALapprox=|1214|0;AS_VarDP=0|37|0;DP=37;QUALapprox=1214;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133200,37;VarDP=37 GT:AD:DP:GQ:PL:SB 1/1:0,37,0:37:99:1214,110,0,1214,110,1214:0,0,21,16 +chrX 1894667 . T . . END=1895503 GT:DP:GQ:MIN_DP:PL 0/0:60:42:60:0,42,1246 +chrX 1895504 . T . . END=1895508 GT:DP:GQ:MIN_DP:PL 0/0:66:0:66:0,0,1577 +chrX 1895509 . A . . END=1895509 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1895510 . C CACACACACACAG, 1480.60 . AS_QUALapprox=|1488|0;AS_VarDP=18|37|0;BaseQRankSum=0.426;DP=67;MQRankSum=0.000;QUALapprox=1488;RAW_GT_COUNT=0,1,0;RAW_MQandDP=240516,67;ReadPosRankSum=0.610;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:18,37,0:55:99:1488,0,585,1543,697,2240:12,6,15,22 +chrX 1895511 . A . . END=1895531 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1895532 . A . . END=1895532 GT:DP:GQ:MIN_DP:PL 0/0:67:0:67:0,0,1713 +chrX 1895533 . A . . END=1895535 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 1895536 . T . . END=1895536 GT:DP:GQ:MIN_DP:PL 0/0:64:0:64:0,0,1607 +chrX 1895537 . A . . END=1895541 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 1895542 . G . . END=1895542 GT:DP:GQ:MIN_DP:PL 0/0:63:1:63:0,1,1672 +chrX 1895543 . A . . END=1895643 GT:DP:GQ:MIN_DP:PL 0/0:64:24:49:0,24,1164 +chrX 1895644 . CACAGACACAA C, 1462.03 . AS_QUALapprox=|1476|0;AS_VarDP=0|33|0;DP=41;QUALapprox=1476;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147600,41;VarDP=33 GT:AD:DP:GQ:PL:SB 1/1:0,33,0:33:99:1476,100,0,1476,100,1476:0,0,9,24 +chrX 1895655 . A . . END=1895715 GT:DP:GQ:MIN_DP:PL 0/0:35:59:35:0,59,917 +chrX 1895716 . TACACAGAC T,CACACAGAC, 1561.03 . AS_QUALapprox=|1575|9|0;AS_VarDP=0|35|0|0;DP=37;QUALapprox=1575;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133200,37;VarDP=35 GT:AD:DP:GQ:PL:SB 1/1:0,35,0,0:35:99:1575,105,0,1568,105,1566,1572,105,1568,1570:0,0,14,21 +chrX 1895725 . A . . END=1895731 GT:DP:GQ:MIN_DP:PL 0/0:35:75:35:0,75,1125 +chrX 1895732 . GAC G, 1603.03 . AS_QUALapprox=|1617|0;AS_VarDP=1|37|0;DP=42;MQRankSum=0.000;QUALapprox=1617;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151200,42;VarDP=38 GT:AD:DP:GQ:PL:SB 1/1:1,37,0:38:90:1617,90,0,1620,111,1641:0,1,15,22 +chrX 1895735 . A . . END=1895811 GT:DP:GQ:MIN_DP:PL 0/0:47:38:39:0,38,1011 +chrX 1895812 . T . . END=1895812 GT:DP:GQ:MIN_DP:PL 0/0:42:16:42:0,16,999 +chrX 1895813 . A . . END=1895817 GT:DP:GQ:MIN_DP:PL 0/0:42:45:42:0,45,1097 +chrX 1895818 . G . . END=1895818 GT:DP:GQ:MIN_DP:PL 0/0:41:4:41:0,4,1035 +chrX 1895819 . A . . END=1895829 GT:DP:GQ:MIN_DP:PL 0/0:46:97:46:0,97,1349 +chrX 1895830 . A . . END=1895830 GT:DP:GQ:MIN_DP:PL 0/0:44:16:44:0,16,979 +chrX 1895831 . A . . END=1895853 GT:DP:GQ:MIN_DP:PL 0/0:40:56:40:0,56,1070 +chrX 1895854 . GAC G, 1247.03 . AS_QUALapprox=|1261|0;AS_VarDP=0|35|0;DP=44;QUALapprox=1261;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158400,44;VarDP=35 GT:AD:DP:GQ:PL:SB 1/1:0,35,0:35:99:1261,105,0,1261,105,1261:0,0,19,16 +chrX 1895857 . A . . END=1896576 GT:DP:GQ:MIN_DP:PL 0/0:49:34:43:0,34,1125 +chrX 1896577 . A G, 2772.06 . AS_QUALapprox=|2786|0;AS_VarDP=0|67|0;DP=69;QUALapprox=2786;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=67 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,67,0:67:99:0|1:1896577_A_G:2786,201,0,2786,201,2786:1896577:0,0,29,38 +chrX 1896578 . C . . END=1896605 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 1896606 . T C, 2797.06 . AS_QUALapprox=|2811|0;AS_VarDP=0|68|0;DP=68;QUALapprox=2811;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;VarDP=68 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,68,0:68:99:0|1:1896577_A_G:2811,204,0,2811,204,2811:1896577:0,0,29,39 +chrX 1896607 . C . . END=1896651 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1896652 . G A, 1907.06 . AS_QUALapprox=|1921|0;AS_VarDP=1|62|0;BaseQRankSum=2.192;DP=65;MQRankSum=-0.149;QUALapprox=1921;RAW_GT_COUNT=0,0,1;RAW_MQandDP=228605,65;ReadPosRankSum=-1.238;VarDP=63 GT:AD:DP:GQ:PL:SB 1/1:1,62,0:63:99:1921,178,0,1923,185,1930:1,0,31,31 +chrX 1896653 . T . . END=1896694 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1896695 . A . . END=1896695 GT:DP:GQ:MIN_DP:PL 0/0:59:19:59:0,19,1493 +chrX 1896696 . T . . END=1896808 GT:DP:GQ:MIN_DP:PL 0/0:59:47:59:0,47,1291 +chrX 1896809 . C A, 1211.06 . AS_QUALapprox=|1225|0;AS_VarDP=3|43|0;BaseQRankSum=1.766;DP=51;MQRankSum=0.494;QUALapprox=1225;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158635,51;ReadPosRankSum=-0.868;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:3,43,0:46:67:1225,67,0,1233,127,1294:1,2,21,22 +chrX 1896810 . C . . END=1896884 GT:DP:GQ:MIN_DP:PL 0/0:47:78:47:0,78,1339 +chrX 1896885 . C T, 2062.06 . AS_QUALapprox=|2076|0;AS_VarDP=0|48|0;DP=48;QUALapprox=2076;RAW_GT_COUNT=0,0,1;RAW_MQandDP=132113,48;VarDP=48 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,48,0:48:99:0|1:1896885_C_T:2076,144,0,2076,144,2076:1896885:0,0,19,29 +chrX 1896886 . C . . END=1896895 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,108,1620 +chrX 1896896 . C T, 2305.06 . AS_QUALapprox=|2319|0;AS_VarDP=0|52|0;DP=52;QUALapprox=2319;RAW_GT_COUNT=0,0,1;RAW_MQandDP=145642,52;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,52,0:52:99:0|1:1896885_C_T:2319,157,0,2319,157,2319:1896885:0,0,23,29 +chrX 1896897 . C . . END=1896904 GT:DP:GQ:MIN_DP:PL 0/0:47:92:47:0,92,1435 +chrX 1896905 . A G, 2169.06 . AS_QUALapprox=|2183|0;AS_VarDP=0|49|0;DP=49;QUALapprox=2183;RAW_GT_COUNT=0,0,1;RAW_MQandDP=132961,49;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,49,0:49:99:0|1:1896885_C_T:2183,147,0,2183,147,2183:1896885:0,0,23,26 +chrX 1896906 . T . . END=1896907 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,120,1800 +chrX 1896908 . G T, 2024.06 . AS_QUALapprox=|2038|0;AS_VarDP=0|46|0;DP=48;QUALapprox=2038;RAW_GT_COUNT=0,0,1;RAW_MQandDP=135361,48;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,46,0:46:99:0|1:1896885_C_T:2038,138,0,2038,138,2038:1896885:0,0,20,26 +chrX 1896909 . C . . END=1897045 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,112,1732 +chrX 1897046 . T C, 1984.06 . AS_QUALapprox=|1998|0;AS_VarDP=2|49|0;BaseQRankSum=1.344;DP=52;MQRankSum=-0.996;QUALapprox=1998;RAW_GT_COUNT=0,0,1;RAW_MQandDP=156111,52;ReadPosRankSum=-0.413;VarDP=51 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:2,49,0:51:69:0|1:1897046_T_C:1998,69,0,2004,147,2083:1897046:1,1,26,23 +chrX 1897047 . C . . END=1897065 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 1897066 . A G, 2265.06 . AS_QUALapprox=|2279|0;AS_VarDP=2|53|0;BaseQRankSum=1.406;DP=55;MQRankSum=-0.944;QUALapprox=2279;RAW_GT_COUNT=0,0,1;RAW_MQandDP=167327,55;ReadPosRankSum=-0.537;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:2,53,0:55:81:0|1:1897046_T_C:2279,81,0,2285,160,2364:1897046:1,1,26,27 +chrX 1897067 . C . . END=1897068 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 1897069 . A G, 2265.06 . AS_QUALapprox=|2279|0;AS_VarDP=2|53|0;BaseQRankSum=2.720;DP=56;MQRankSum=-0.944;QUALapprox=2279;RAW_GT_COUNT=0,0,1;RAW_MQandDP=170927,56;ReadPosRankSum=-0.697;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:2,53,0:55:81:0|1:1897046_T_C:2279,81,0,2285,160,2364:1897046:1,1,26,27 +chrX 1897070 . T . . END=1897123 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,110,1582 +chrX 1897124 . G C, 1831.06 . AS_QUALapprox=|1845|0;AS_VarDP=0|55|0;DP=56;QUALapprox=1845;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180535,56;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1845,165,0,1845,165,1845:0,0,28,27 +chrX 1897125 . T . . END=1897824 GT:DP:GQ:MIN_DP:PL 0/0:60:68:60:0,68,1569 +chrX 1897825 . C G, 2005.06 . AS_QUALapprox=|2019|0;AS_VarDP=0|60|0;DP=62;QUALapprox=2019;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:2019,180,0,2019,180,2019:0,0,26,34 +chrX 1897826 . G . . END=1898075 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1898076 . C A, 2192.06 . AS_QUALapprox=|2206|0;AS_VarDP=0|67|0;DP=69;QUALapprox=2206;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=67 GT:AD:DP:GQ:PL:SB 1/1:0,67,0:67:99:2206,201,0,2206,201,2206:0,0,31,36 +chrX 1898077 . C . . END=1898427 GT:DP:GQ:MIN_DP:PL 0/0:56:93:56:0,93,1594 +chrX 1898428 . C CA, 822.60 . AS_QUALapprox=|830|0;AS_VarDP=27|28|0;BaseQRankSum=0.841;DP=59;MQRankSum=0.000;QUALapprox=830;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=1.317;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,28,0:55:99:0|1:1898428_C_CA:830,0,1039,912,1124,2035:1898428:13,14,14,14 +chrX 1898429 . A . . END=1898429 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 1898430 . A G, 725.64 . AS_QUALapprox=|733|0;AS_VarDP=28|27|0;BaseQRankSum=-0.379;DP=59;MQRankSum=0.000;QUALapprox=733;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-1.507;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:28,27,0:55:99:1|0:1898428_C_CA:733,0,1093,817,1174,1991:1898428:14,14,13,14 +chrX 1898431 . C . . END=1898609 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 1898610 . CT C, 354.60 . AS_QUALapprox=|362|0;AS_VarDP=21|18|0;BaseQRankSum=1.677;DP=52;MQRankSum=0.000;QUALapprox=362;RAW_GT_COUNT=0,1,0;RAW_MQandDP=186736,52;ReadPosRankSum=-0.916;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:21,18,0:39:99:362,0,437,425,491,916:13,8,8,10 +chrX 1898612 . T . . END=1898668 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,105,1271 +chrX 1898669 . A G, 561.64 . AS_QUALapprox=|569|0;AS_VarDP=28|24|0;BaseQRankSum=-1.287;DP=56;MQRankSum=0.000;QUALapprox=569;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=0.542;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:28,24,0:52:99:569,0,753,652,824,1476:16,12,14,10 +chrX 1898670 . A . . END=1898946 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 1898947 . C T, 749.64 . AS_QUALapprox=|757|0;AS_VarDP=45|29|0;BaseQRankSum=2.297;DP=76;MQRankSum=0.000;QUALapprox=757;RAW_GT_COUNT=0,1,0;RAW_MQandDP=273600,76;ReadPosRankSum=0.138;VarDP=74 GT:AD:DP:GQ:PL:SB 0/1:45,29,0:74:99:757,0,1145,891,1233,2123:19,26,18,11 +chrX 1898948 . G . . END=1899123 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 1899124 . C T, 691.64 . AS_QUALapprox=|699|0;AS_VarDP=31|27|0;BaseQRankSum=0.890;DP=60;MQRankSum=0.000;QUALapprox=699;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=0.647;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:31,27,0:58:99:699,0,798,792,879,1671:14,17,13,14 +chrX 1899125 . G . . END=1899275 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 1899276 . CT C, 440.60 . AS_QUALapprox=|448|0;AS_VarDP=30|21|0;BaseQRankSum=-0.775;DP=59;MQRankSum=0.000;QUALapprox=448;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=0.619;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:30,21,0:51:99:448,0,701,538,764,1303:17,13,14,7 +chrX 1899278 . T . . END=1899293 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1899294 . A G, 485.64 . AS_QUALapprox=|493|0;AS_VarDP=36|23|0;BaseQRankSum=-0.729;DP=64;MQRankSum=0.000;QUALapprox=493;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=1.345;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:36,23,0:59:99:493,0,968,601,1035,1637:18,18,15,8 +chrX 1899295 . G . . END=1899332 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1899333 . C T, 916.64 . AS_QUALapprox=|924|0;AS_VarDP=23|36|0;BaseQRankSum=0.417;DP=60;MQRankSum=0.000;QUALapprox=924;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=0.606;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:23,36,0:59:99:924,0,858,993,965,1958:11,12,16,20 +chrX 1899334 . G . . END=1899340 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1899341 . C G, 544.64 . AS_QUALapprox=|552|0;AS_VarDP=36|23|0;BaseQRankSum=0.372;DP=59;MQRankSum=0.000;QUALapprox=552;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-1.050;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:36,23,0:59:99:552,0,1419,660,1488,2149:16,20,11,12 +chrX 1899342 . C . . END=1899431 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 1899432 . A G, 463.64 . AS_QUALapprox=|471|0;AS_VarDP=35|19|0;BaseQRankSum=0.685;DP=58;MQRankSum=0.000;QUALapprox=471;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=0.281;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:35,19,0:54:99:471,0,1014,576,1071,1647:18,17,5,14 +chrX 1899433 . G . . END=1900239 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,111,1468 +chrX 1900240 . G T, 1613.06 . AS_QUALapprox=|1627|0;AS_VarDP=0|49|0;DP=50;QUALapprox=1627;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172039,50;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1627,147,0,1627,147,1627:0,0,20,29 +chrX 1900241 . G . . END=1900299 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 1900300 . A G, 1536.06 . AS_QUALapprox=|1550|0;AS_VarDP=0|47|0;DP=49;QUALapprox=1550;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172741,49;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1550,141,0,1550,141,1550:0,0,24,23 +chrX 1900301 . G . . END=1900502 GT:DP:GQ:MIN_DP:PL 0/0:54:28:50:0,28,1241 +chrX 1900503 . AT A, 1760.03 . AS_QUALapprox=|1774|0;AS_VarDP=0|49|0;DP=54;QUALapprox=1774;RAW_GT_COUNT=0,0,1;RAW_MQandDP=193504,54;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,49,0:49:99:0|1:1900484_G_A:1774,147,0,1774,147,1774:1900484:0,0,27,22 +chrX 1900505 . T . . END=1900506 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 1900507 . A . . END=1900507 GT:DP:GQ:MIN_DP:PL 0/0:52:15:52:0,15,1929 +chrX 1900508 . C . . END=1900592 GT:DP:GQ:MIN_DP:PL 0/0:44:90:44:0,90,1340 +chrX 1900593 . A T, 656.64 . AS_QUALapprox=|664|0;AS_VarDP=21|24|0;BaseQRankSum=-1.306;DP=48;MQRankSum=0.000;QUALapprox=664;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=0.660;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:21,24,0:45:99:664,0,592,727,664,1391:7,14,11,13 +chrX 1900594 . G . . END=1900657 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,118,1461 +chrX 1900658 . G C, 649.64 . AS_QUALapprox=|657|0;AS_VarDP=26|25|0;BaseQRankSum=-0.587;DP=52;MQRankSum=0.000;QUALapprox=657;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=-0.217;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:26,25,0:51:99:657,0,681,734,756,1490:9,17,12,13 +chrX 1900659 . T . . END=1900736 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,99,1485 +chrX 1900737 . G C, 904.64 . AS_QUALapprox=|912|0;AS_VarDP=21|25|0;BaseQRankSum=1.850;DP=47;MQRankSum=1.135;QUALapprox=912;RAW_GT_COUNT=0,1,0;RAW_MQandDP=168964,47;ReadPosRankSum=0.569;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,25,0:46:99:0|1:1900737_G_C:912,0,734,976,809,1785:1900737:11,10,7,18 +chrX 1900738 . A . . END=1900742 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,102,1391 +chrX 1900743 . ATTT A, 886.60 . AS_QUALapprox=|894|0;AS_VarDP=19|25|0;BaseQRankSum=0.241;DP=46;MQRankSum=0.197;QUALapprox=894;RAW_GT_COUNT=0,1,0;RAW_MQandDP=163364,46;ReadPosRankSum=0.860;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:19,25,0:44:99:0|1:1900737_G_C:894,0,690,951,764,1715:1900737:11,8,6,19 +chrX 1900747 . T . . END=1900807 GT:DP:GQ:MIN_DP:PL 0/0:40:69:40:0,69,1091 +chrX 1900808 . C A, 491.64 . AS_QUALapprox=|499|0;AS_VarDP=22|20|0;BaseQRankSum=-0.276;DP=43;MQRankSum=1.001;QUALapprox=499;RAW_GT_COUNT=0,1,0;RAW_MQandDP=152800,43;ReadPosRankSum=1.411;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:22,20,0:42:99:499,0,598,566,657,1223:8,14,12,8 +chrX 1900809 . A . . END=1900906 GT:DP:GQ:MIN_DP:PL 0/0:52:72:52:0,72,1391 +chrX 1900907 . AAT A, 859.60 . AS_QUALapprox=|867|0;AS_VarDP=31|23|0;BaseQRankSum=2.286;DP=56;MQRankSum=0.000;QUALapprox=867;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=0.175;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:31,23,0:54:99:867,0,1181,960,1250,2211:15,16,10,13 +chrX 1900910 . T . . END=1900958 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 1900959 . T C, 1121.64 . AS_QUALapprox=|1129|0;AS_VarDP=26|29|0;BaseQRankSum=1.216;DP=57;MQRankSum=0.000;QUALapprox=1129;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-0.649;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,29,0:55:99:0|1:1900959_T_C:1129,0,983,1207,1071,2278:1900959:14,12,17,12 +chrX 1900960 . G . . END=1900960 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 1900961 . T C, 1121.64 . AS_QUALapprox=|1129|0;AS_VarDP=26|29|0;BaseQRankSum=0.911;DP=56;MQRankSum=0.000;QUALapprox=1129;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-0.677;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,29,0:55:99:0|1:1900959_T_C:1129,0,983,1207,1071,2278:1900959:14,12,17,12 +chrX 1900962 . G . . END=1900984 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 1900985 . C T, 522.64 . AS_QUALapprox=|530|0;AS_VarDP=29|21|0;BaseQRankSum=0.106;DP=53;MQRankSum=0.000;QUALapprox=530;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=-0.678;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:29,21,0:50:99:530,0,773,616,836,1452:17,12,15,6 +chrX 1900986 . G . . END=1901068 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,118,1782 +chrX 1901069 . C T, 922.64 . AS_QUALapprox=|930|0;AS_VarDP=24|34|0;BaseQRankSum=-0.553;DP=62;MQRankSum=0.000;QUALapprox=930;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=-0.980;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:24,34,0:58:99:930,0,651,1002,752,1754:18,6,13,21 +chrX 1901070 . A . . END=1901238 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 1901239 . G A, 687.64 . AS_QUALapprox=|695|0;AS_VarDP=30|26|0;BaseQRankSum=2.171;DP=58;MQRankSum=-1.038;QUALapprox=695;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208116,58;ReadPosRankSum=-1.479;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:30,26,0:56:99:695,0,695,783,773,1556:15,15,16,10 +chrX 1901240 . G . . END=1901333 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1901334 . C T, 793.64 . AS_QUALapprox=|801|0;AS_VarDP=22|30|0;BaseQRankSum=0.258;DP=55;MQRankSum=-0.817;QUALapprox=801;RAW_GT_COUNT=0,1,0;RAW_MQandDP=197316,55;ReadPosRankSum=0.787;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:22,30,0:52:99:801,0,549,867,638,1506:10,12,15,15 +chrX 1901335 . G . . END=1901464 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 1901465 . CA C, 1085.03 . AS_QUALapprox=|1099|0;AS_VarDP=0|42|0;DP=53;QUALapprox=1099;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=42 GT:AD:DP:GQ:PL:SB 1/1:0,42,0:42:99:1099,126,0,1099,126,1099:0,0,16,26 +chrX 1901467 . A . . END=1901810 GT:DP:GQ:MIN_DP:PL 0/0:53:52:53:0,52,1221 +chrX 1901811 . C CT, 879.03 . AS_QUALapprox=|893|0;AS_VarDP=0|32|0;DP=42;QUALapprox=893;RAW_GT_COUNT=0,0,1;RAW_MQandDP=148717,42;VarDP=32 GT:AD:DP:GQ:PL:SB 1/1:0,32,0:32:96:893,96,0,893,96,893:0,0,20,12 +chrX 1901812 . T . . END=1901855 GT:DP:GQ:MIN_DP:PL 0/0:37:75:37:0,75,1010 +chrX 1901856 . T C, 1024.06 . AS_QUALapprox=|1038|0;AS_VarDP=0|35|0;DP=37;QUALapprox=1038;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118078,37;VarDP=35 GT:AD:DP:GQ:PL:SB 1/1:0,35,0:35:99:1038,104,0,1038,104,1038:0,0,17,18 +chrX 1901857 . G . . END=1902027 GT:DP:GQ:MIN_DP:PL 0/0:48:58:48:0,58,1130 +chrX 1902028 . A C, 704.64 . AS_QUALapprox=|712|0;AS_VarDP=24|26|0;BaseQRankSum=0.511;DP=51;MQRankSum=-2.220;QUALapprox=712;RAW_GT_COUNT=0,1,0;RAW_MQandDP=173241,51;ReadPosRankSum=1.185;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:24,26,0:50:99:712,0,634,784,712,1496:16,8,15,11 +chrX 1902029 . A . . END=1902097 GT:DP:GQ:MIN_DP:PL 0/0:52:54:52:0,54,1364 +chrX 1902098 . G A, 0.03 . AS_QUALapprox=|2|0;AS_VarDP=41|3|0;BaseQRankSum=-2.139;DP=48;MQRankSum=-5.415;QUALapprox=2;RAW_GT_COUNT=0,1,0;RAW_MQandDP=163553,48;ReadPosRankSum=-0.859;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:41,3,0:44:2:0|1:1902098_G_A:2,0,1669,125,1678,1803:1902098:18,23,2,1 +chrX 1902099 . T . . END=1902101 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,120,1800 +chrX 1902102 . G A, 0.03 . AS_QUALapprox=|2|0;AS_VarDP=41|3|0;BaseQRankSum=-1.608;DP=47;MQRankSum=-5.415;QUALapprox=2;RAW_GT_COUNT=0,1,0;RAW_MQandDP=159953,47;ReadPosRankSum=-1.025;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:41,3,0:44:2:0|1:1902098_G_A:2,0,1669,125,1678,1803:1902098:18,23,2,1 +chrX 1902103 . C . . END=1902118 GT:DP:GQ:MIN_DP:PL 0/0:44:91:44:0,91,1290 +chrX 1902119 . C CTT, 655.60 . AS_QUALapprox=|663|0;AS_VarDP=19|23|0;BaseQRankSum=1.013;DP=53;MQRankSum=-1.267;QUALapprox=663;RAW_GT_COUNT=0,1,0;RAW_MQandDP=186865,53;ReadPosRankSum=-0.228;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:19,23,0:42:99:663,0,581,720,650,1371:9,10,10,13 +chrX 1902120 . T . . END=1902130 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,111,1559 +chrX 1902131 . G . . END=1902131 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,1217 +chrX 1902132 . A . . END=1902405 GT:DP:GQ:MIN_DP:PL 0/0:48:81:48:0,81,1171 +chrX 1902406 . T C, 882.64 . AS_QUALapprox=|890|0;AS_VarDP=38|37|0;BaseQRankSum=-4.028;DP=77;MQRankSum=-0.987;QUALapprox=890;RAW_GT_COUNT=0,1,0;RAW_MQandDP=274849,77;ReadPosRankSum=1.145;VarDP=75 GT:AD:DP:GQ:PL:SB 0/1:38,37,0:75:99:890,0,1087,1005,1197,2201:18,20,17,20 +chrX 1902407 . G . . END=1902670 GT:DP:GQ:MIN_DP:PL 0/0:51:78:51:0,78,1311 +chrX 1902671 . T G, 508.64 . AS_QUALapprox=|516|0;AS_VarDP=28|20|0;BaseQRankSum=0.419;DP=53;MQRankSum=0.000;QUALapprox=516;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=0.209;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:28,20,0:48:99:516,0,770,599,830,1429:12,16,9,11 +chrX 1902672 . T . . END=1903464 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,99,1360 +chrX 1903465 . A G, 2562.06 . AS_QUALapprox=|2576|0;AS_VarDP=0|59|0;DP=59;QUALapprox=2576;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=59 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,59,0:59:99:0|1:1903465_A_G:2576,178,0,2576,178,2576:1903465:0,0,27,32 +chrX 1903466 . C . . END=1903473 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 1903474 . T C, 2562.06 . AS_QUALapprox=|2576|0;AS_VarDP=0|59|0;DP=60;QUALapprox=2576;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=59 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,59,0:59:99:0|1:1903465_A_G:2576,178,0,2576,178,2576:1903465:0,0,27,32 +chrX 1903475 . C . . END=1903605 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 1903606 . G A, 1064.64 . AS_QUALapprox=|1072|0;AS_VarDP=25|38|0;BaseQRankSum=1.623;DP=64;MQRankSum=0.000;QUALapprox=1072;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=2.467;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:25,38,0:63:99:1072,0,570,1147,684,1831:15,10,22,16 +chrX 1903607 . G . . END=1903648 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1903649 . C T, 1084.64 . AS_QUALapprox=|1092|0;AS_VarDP=25|39|0;BaseQRankSum=0.951;DP=65;MQRankSum=0.000;QUALapprox=1092;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=-1.005;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:25,39,0:64:99:1092,0,606,1167,724,1891:12,13,21,18 +chrX 1903650 . G . . END=1904182 GT:DP:GQ:MIN_DP:PL 0/0:60:95:60:0,95,1480 +chrX 1904183 . T C, 504.64 . AS_QUALapprox=|512|0;AS_VarDP=23|19|0;BaseQRankSum=0.270;DP=46;MQRankSum=0.000;QUALapprox=512;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=0.329;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:23,19,0:42:99:512,0,642,581,699,1280:16,7,10,9 +chrX 1904184 . C . . END=1904207 GT:DP:GQ:MIN_DP:PL 0/0:41:91:41:0,91,1216 +chrX 1904208 . A G, 506.64 . AS_QUALapprox=|514|0;AS_VarDP=23|21|0;BaseQRankSum=-2.282;DP=47;MQRankSum=0.000;QUALapprox=514;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=0.388;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:23,21,0:44:99:514,0,646,583,709,1292:14,9,12,9 +chrX 1904209 . G . . END=1904274 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,113,1409 +chrX 1904275 . C A, 1514.06 . AS_QUALapprox=|1528|0;AS_VarDP=0|46|0;DP=49;QUALapprox=1528;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1528,138,0,1528,138,1528:0,0,23,23 +chrX 1904276 . A . . END=1904523 GT:DP:GQ:MIN_DP:PL 0/0:37:27:36:0,27,1007 +chrX 1904524 . T . . END=1904524 GT:DP:GQ:MIN_DP:PL 0/0:37:7:37:0,7,1007 +chrX 1904525 . A . . END=1904525 GT:DP:GQ:MIN_DP:PL 0/0:39:78:39:0,78,1166 +chrX 1904526 . G . . END=1904546 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,839 +chrX 1904547 . A . . END=1904547 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,111,1665 +chrX 1904548 . T . . END=1904548 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,778 +chrX 1904549 . G . . END=1904549 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,114,1710 +chrX 1904550 . T . . END=1904554 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,680 +chrX 1904555 . A . . END=1904555 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,120,1800 +chrX 1904556 . T . . END=1904557 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,794 +chrX 1904558 . G . . END=1904583 GT:DP:GQ:MIN_DP:PL 0/0:46:89:46:0,89,1390 +chrX 1904584 . A . . END=1904584 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,1002 +chrX 1904585 . T . . END=1904586 GT:DP:GQ:MIN_DP:PL 0/0:47:67:47:0,67,1375 +chrX 1904587 . G . . END=1904587 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,1118 +chrX 1904588 . T . . END=1904589 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,106,1474 +chrX 1904590 . A . . END=1904590 GT:DP:GQ:MIN_DP:PL 0/0:50:0:50:0,0,1001 +chrX 1904591 . T . . END=1904592 GT:DP:GQ:MIN_DP:PL 0/0:51:46:51:0,46,1459 +chrX 1904593 . A . . END=1904593 GT:DP:GQ:MIN_DP:PL 0/0:50:0:50:0,0,715 +chrX 1904594 . T . . END=1904595 GT:DP:GQ:MIN_DP:PL 0/0:52:84:52:0,84,1543 +chrX 1904596 . A . . END=1904596 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1048 +chrX 1904597 . T . . END=1904600 GT:DP:GQ:MIN_DP:PL 0/0:52:83:52:0,83,1462 +chrX 1904601 . A . . END=1904602 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,809 +chrX 1904603 . T . . END=1904603 GT:DP:GQ:MIN_DP:PL 0/0:51:83:51:0,83,1522 +chrX 1904604 . G . . END=1904605 GT:DP:GQ:MIN_DP:PL 0/0:53:0:53:0,0,0 +chrX 1904606 . T . . END=1904608 GT:DP:GQ:MIN_DP:PL 0/0:53:41:53:0,41,1545 +chrX 1904609 . C . . END=1904620 GT:DP:GQ:MIN_DP:PL 0/0:54:0:54:0,0,0 +chrX 1904621 . G . . END=1904621 GT:DP:GQ:MIN_DP:PL 0/0:55:61:55:0,61,1663 +chrX 1904622 . A . . END=1904624 GT:DP:GQ:MIN_DP:PL 0/0:53:0:53:0,0,0 +chrX 1904625 . T . . END=1904626 GT:DP:GQ:MIN_DP:PL 0/0:55:81:55:0,81,1603 +chrX 1904627 . A ATGATGATAATGGTGATGATGTGATGGTGATGATAGTGATGGTGATGATGGTGATGATGATGATGGAGATGAGGATGATGGTGATGATGGTGATAATGGTGATAATGATGACAGTGATGATGTGATGGTGATGATGATGATAGGGTGAAAATGTGATGATGATGATGGTGATGATATGGTGATGGTGATGGTGATGATAGTGATGTATGGTGATGGTGATGG,ATGATGATAATGGTGATGATGTGATGGTGATGATAGTGATGGTGATGATGGTGATGGTGAGGATGCTGATGGTGATGACGGTGATGGTGATGATGGTGATAATGGTGATAATGATGACAGTGATGATGTGATGGTGATGATGATGATAGGGTGAAAATGTGATGATGATGATGGTGATGATATGGTGATGGTGATGGTGATGATAGTGATGTATGGTGATGGTGATGG, 2067.02 . AS_QUALapprox=|1717|2028|0;AS_VarDP=6|2|10|0;BaseQRankSum=2.357;DP=59;MQRankSum=-1.719;QUALapprox=2084;RAW_GT_COUNT=0,0,1;RAW_MQandDP=177561,59;ReadPosRankSum=1.204;VarDP=18 GT:AD:DP:GQ:PL:SB 1/2:6,2,10,0:18:56:2084,473,367,180,0,56,1381,485,193,1284:5,1,4,8 +chrX 1904628 . T . . END=1904630 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,114,1710 +chrX 1904631 . T . . END=1904642 GT:DP:GQ:MIN_DP:PL 0/0:61:0:61:0,0,426 +chrX 1904643 . T . . END=1904646 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1904647 . A . . END=1904652 GT:DP:GQ:MIN_DP:PL 0/0:71:0:71:0,0,1229 +chrX 1904653 . G . . END=1904653 GT:DP:GQ:MIN_DP:PL 0/0:74:99:74:0,120,1800 +chrX 1904654 . A . . END=1904660 GT:DP:GQ:MIN_DP:PL 0/0:72:0:72:0,0,1125 +chrX 1904661 . T . . END=1904663 GT:DP:GQ:MIN_DP:PL 0/0:70:60:70:0,60,1800 +chrX 1904664 . T . . END=1904665 GT:DP:GQ:MIN_DP:PL 0/0:69:0:69:0,0,1488 +chrX 1904666 . G . . END=1904688 GT:DP:GQ:MIN_DP:PL 0/0:68:45:68:0,45,1781 +chrX 1904689 . A . . END=1904689 GT:DP:GQ:MIN_DP:PL 0/0:68:0:68:0,0,1328 +chrX 1904690 . T . . END=1904690 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 1904691 . A . . END=1904691 GT:DP:GQ:MIN_DP:PL 0/0:61:0:61:0,0,928 +chrX 1904692 . A . . END=1904692 GT:DP:GQ:MIN_DP:PL 0/0:62:67:62:0,67,1747 +chrX 1904693 . C . . END=1904694 GT:DP:GQ:MIN_DP:PL 0/0:63:0:63:0,0,814 +chrX 1904695 . G . . END=1904695 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 1904696 . T . . END=1904696 GT:DP:GQ:MIN_DP:PL 0/0:63:0:63:0,0,1533 +chrX 1904697 . G . . END=1904697 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 1904698 . A . . END=1904699 GT:DP:GQ:MIN_DP:PL 0/0:61:0:61:0,0,1130 +chrX 1904700 . G . . END=1904703 GT:DP:GQ:MIN_DP:PL 0/0:63:43:63:0,43,1678 +chrX 1904704 . T . . END=1904704 GT:DP:GQ:MIN_DP:PL 0/0:61:0:61:0,0,1543 +chrX 1904705 . G . . END=1904705 GT:DP:GQ:MIN_DP:PL 0/0:61:30:61:0,30,1663 +chrX 1904706 . A . . END=1904708 GT:DP:GQ:MIN_DP:PL 0/0:59:0:59:0,0,1345 +chrX 1904709 . G . . END=1904709 GT:DP:GQ:MIN_DP:PL 0/0:58:70:58:0,70,1697 +chrX 1904710 . T . . END=1904716 GT:DP:GQ:MIN_DP:PL 0/0:57:0:57:0,0,1125 +chrX 1904717 . A . . END=1904717 GT:DP:GQ:MIN_DP:PL 0/0:56:39:56:0,39,1517 +chrX 1904718 . A . . END=1904719 GT:DP:GQ:MIN_DP:PL 0/0:55:0:55:0,0,1319 +chrX 1904720 . G . . END=1904720 GT:DP:GQ:MIN_DP:PL 0/0:50:46:50:0,46,1429 +chrX 1904721 . A . . END=1904722 GT:DP:GQ:MIN_DP:PL 0/0:50:0:50:0,0,1225 +chrX 1904723 . G . . END=1905208 GT:DP:GQ:MIN_DP:PL 0/0:44:33:42:0,33,971 +chrX 1905209 . A G, 712.64 . AS_QUALapprox=|720|0;AS_VarDP=23|28|0;BaseQRankSum=-2.008;DP=51;MQRankSum=0.000;QUALapprox=720;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=0.284;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:23,28,0:51:99:720,0,637,790,720,1510:8,15,13,15 +chrX 1905210 . C . . END=1905768 GT:DP:GQ:MIN_DP:PL 0/0:58:86:58:0,86,1514 +chrX 1905769 . G A, 852.64 . AS_QUALapprox=|860|0;AS_VarDP=27|31|0;BaseQRankSum=0.150;DP=58;MQRankSum=0.000;QUALapprox=860;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=1.032;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:27,31,0:58:99:860,0,964,941,1057,1998:14,13,16,15 +chrX 1905770 . A . . END=1905790 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 1905791 . A G, 869.64 . AS_QUALapprox=|877|0;AS_VarDP=29|32|0;BaseQRankSum=0.627;DP=62;MQRankSum=0.000;QUALapprox=877;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=-2.189;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:29,32,0:61:99:877,0,1089,964,1186,2150:15,14,15,17 +chrX 1905792 . C . . END=1905850 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 1905851 . T C, 1821.06 . AS_QUALapprox=|1835|0;AS_VarDP=0|56|0;DP=59;QUALapprox=1835;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1835,168,0,1835,168,1835:0,0,30,26 +chrX 1905852 . G . . END=1906511 GT:DP:GQ:MIN_DP:PL 0/0:58:98:58:0,98,1440 +chrX 1906512 . G A, 881.64 . AS_QUALapprox=|889|0;AS_VarDP=29|32|0;BaseQRankSum=0.529;DP=63;MQRankSum=0.000;QUALapprox=889;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=-0.448;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:29,32,0:61:99:889,0,775,976,871,1847:17,12,19,13 +chrX 1906513 . T . . END=1906950 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,101,1613 +chrX 1906951 . T C, 842.64 . AS_QUALapprox=|850|0;AS_VarDP=28|31|0;BaseQRankSum=-0.589;DP=59;MQRankSum=0.000;QUALapprox=850;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=0.197;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:28,31,0:59:99:850,0,765,934,859,1793:17,11,17,14 +chrX 1906952 . G . . END=1906997 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,109,1663 +chrX 1906998 . G C, 1080.64 . AS_QUALapprox=|1088|0;AS_VarDP=29|28|0;BaseQRankSum=-1.252;DP=59;MQRankSum=0.000;QUALapprox=1088;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-0.535;VarDP=57 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,28,0:57:99:0|1:1906998_G_C:1088,0,1133,1176,1217,2393:1906998:19,10,16,12 +chrX 1906999 . A G, 1080.64 . AS_QUALapprox=|1088|0;AS_VarDP=29|28|0;BaseQRankSum=-2.633;DP=59;MQRankSum=0.000;QUALapprox=1088;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-0.423;VarDP=57 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,28,0:57:99:0|1:1906998_G_C:1088,0,1133,1176,1217,2393:1906998:19,10,16,12 +chrX 1907000 . G . . END=1907271 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 1907272 . G A, 662.64 . AS_QUALapprox=|670|0;AS_VarDP=24|24|0;BaseQRankSum=0.487;DP=50;MQRankSum=0.000;QUALapprox=670;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=0.495;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:24,24,0:48:99:670,0,660,742,732,1474:11,13,12,12 +chrX 1907273 . A . . END=1907406 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1907407 . T G, 987.64 . AS_QUALapprox=|995|0;AS_VarDP=25|35|0;BaseQRankSum=-1.002;DP=60;MQRankSum=0.000;QUALapprox=995;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=0.660;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:25,35,0:60:99:995,0,679,1070,784,1854:13,12,14,21 +chrX 1907408 . A . . END=1907468 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 1907469 . G T, 1008.64 . AS_QUALapprox=|1016|0;AS_VarDP=26|37|0;BaseQRankSum=-1.019;DP=64;MQRankSum=0.000;QUALapprox=1016;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=-0.098;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:26,37,0:63:99:1016,0,684,1094,796,1890:15,11,16,21 +chrX 1907470 . G . . END=1907892 GT:DP:GQ:MIN_DP:PL 0/0:52:89:52:0,89,1246 +chrX 1907893 . A G, 1726.06 . AS_QUALapprox=|1740|0;AS_VarDP=0|55|0;DP=61;QUALapprox=1740;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1740,165,0,1740,165,1740:0,0,27,28 +chrX 1907894 . T . . END=1908878 GT:DP:GQ:MIN_DP:PL 0/0:52:94:52:0,94,1265 +chrX 1908879 . G A, 566.64 . AS_QUALapprox=|574|0;AS_VarDP=28|21|0;BaseQRankSum=2.786;DP=50;MQRankSum=-0.206;QUALapprox=574;RAW_GT_COUNT=0,1,0;RAW_MQandDP=177832,50;ReadPosRankSum=1.345;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:28,21,0:49:99:574,0,671,657,735,1392:14,14,14,7 +chrX 1908880 . C . . END=1909077 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 1909078 . T G, 701.64 . AS_QUALapprox=|709|0;AS_VarDP=40|20|0;BaseQRankSum=0.744;DP=62;MQRankSum=-0.504;QUALapprox=709;RAW_GT_COUNT=0,1,0;RAW_MQandDP=221305,62;ReadPosRankSum=-1.792;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:40,20,0:60:99:0|1:1909078_T_G:709,0,1578,830,1638,2468:1909078:21,19,9,11 +chrX 1909079 . C . . END=1909079 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1909080 . G A, 701.64 . AS_QUALapprox=|709|0;AS_VarDP=40|20|0;BaseQRankSum=1.227;DP=60;MQRankSum=-0.504;QUALapprox=709;RAW_GT_COUNT=0,1,0;RAW_MQandDP=214105,60;ReadPosRankSum=-1.754;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:40,20,0:60:99:0|1:1909078_T_G:709,0,1578,830,1638,2468:1909078:21,19,9,11 +chrX 1909081 . C . . END=1909570 GT:DP:GQ:MIN_DP:PL 0/0:51:89:51:0,89,1220 +chrX 1909571 . G A, 1659.06 . AS_QUALapprox=|1673|0;AS_VarDP=0|51|0;DP=53;QUALapprox=1673;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1673,153,0,1673,153,1673:0,0,28,23 +chrX 1909572 . T . . END=1909946 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,108,1614 +chrX 1909947 . A G, 1891.06 . AS_QUALapprox=|1905|0;AS_VarDP=0|59|0;DP=61;QUALapprox=1905;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1905,176,0,1905,176,1905:0,0,26,33 +chrX 1909948 . C . . END=1909998 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 1909999 . C CCT, 940.60 . AS_QUALapprox=|948|0;AS_VarDP=26|27|0;BaseQRankSum=1.892;DP=57;MQRankSum=-0.944;QUALapprox=948;RAW_GT_COUNT=0,1,0;RAW_MQandDP=199333,57;ReadPosRankSum=-0.676;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:26,27,0:53:99:948,0,986,1027,1067,2094:8,18,10,17 +chrX 1910000 . C CTGTGTGTG, 944.60 . AS_QUALapprox=|952|0;AS_VarDP=28|25|0;BaseQRankSum=-2.493;DP=56;MQRankSum=0.983;QUALapprox=952;RAW_GT_COUNT=0,1,0;RAW_MQandDP=197812,56;ReadPosRankSum=-0.214;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:28,25,0:53:99:952,0,1014,1036,1089,2125:10,18,8,17 +chrX 1910001 . T . . END=1910060 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,118,1505 +chrX 1910061 . CCTCTTTCTCCCACTCT C, 538.60 . AS_QUALapprox=|546|0;AS_VarDP=28|15|0;BaseQRankSum=0.483;DP=50;MQRankSum=0.000;QUALapprox=546;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=-0.433;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:28,15,0:43:99:546,0,1109,631,1155,1786:12,16,6,9 +chrX 1910078 . C . . END=1910226 GT:DP:GQ:MIN_DP:PL 0/0:39:24:37:0,24,959 +chrX 1910227 . T . . END=1910227 GT:DP:GQ:MIN_DP:PL 0/0:39:18:39:0,18,925 +chrX 1910228 . C CCTCT, 534.60 . AS_QUALapprox=|542|0;AS_VarDP=12|14|0;BaseQRankSum=1.151;DP=31;MQRankSum=0.000;QUALapprox=542;RAW_GT_COUNT=0,1,0;RAW_MQandDP=111600,31;ReadPosRankSum=0.154;VarDP=26 GT:AD:DP:GQ:PL:SB 0/1:12,14,0:26:99:542,0,458,578,500,1078:3,9,5,9 +chrX 1910229 . C . . END=1910279 GT:DP:GQ:MIN_DP:PL 0/0:30:46:30:0,46,731 +chrX 1910280 . TCTCA T, 630.60 . AS_QUALapprox=|638|0;AS_VarDP=12|18|0;BaseQRankSum=-1.018;DP=31;MQRankSum=0.000;QUALapprox=638;RAW_GT_COUNT=0,1,0;RAW_MQandDP=111600,31;ReadPosRankSum=-1.147;VarDP=30 GT:AD:DP:GQ:PL:SB 0/1:12,18,0:30:99:638,0,407,674,461,1135:4,8,7,11 +chrX 1910285 . C . . END=1910401 GT:DP:GQ:MIN_DP:PL 0/0:30:24:24:0,24,685 +chrX 1910402 . C . . END=1910438 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,514 +chrX 1910439 . A T, 1038.06 . AS_QUALapprox=|1052|0;AS_VarDP=0|33|0;DP=45;QUALapprox=1052;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162000,45;VarDP=33 GT:AD:DP:GQ:PL:SB 1/1:0,33,0:33:99:1052,99,0,1125,105,1313:0,0,15,18 +chrX 1910440 . C . . END=1910476 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,581 +chrX 1910477 . T . . END=1910601 GT:DP:GQ:MIN_DP:PL 0/0:47:32:41:0,32,876 +chrX 1910602 . T . . END=1910602 GT:DP:GQ:MIN_DP:PL 0/0:39:4:39:0,4,948 +chrX 1910603 . C . . END=1910609 GT:DP:GQ:MIN_DP:PL 0/0:39:85:39:0,85,1206 +chrX 1910610 . G . . END=1910610 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,830 +chrX 1910611 . T . . END=1910617 GT:DP:GQ:MIN_DP:PL 0/0:39:85:39:0,85,1216 +chrX 1910618 . T . . END=1910618 GT:DP:GQ:MIN_DP:PL 0/0:40:7:40:0,7,942 +chrX 1910619 . T . . END=1910625 GT:DP:GQ:MIN_DP:PL 0/0:43:36:43:0,36,997 +chrX 1910626 . T . . END=1910626 GT:DP:GQ:MIN_DP:PL 0/0:45:2:45:0,2,1097 +chrX 1910627 . T . . END=1910645 GT:DP:GQ:MIN_DP:PL 0/0:47:49:47:0,49,1085 +chrX 1910646 . G . . END=1910646 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,804 +chrX 1910647 . C . . END=1910653 GT:DP:GQ:MIN_DP:PL 0/0:50:48:50:0,48,1170 +chrX 1910654 . T . . END=1910654 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,997 +chrX 1910655 . CCTCTCTTCCTCCCTCTTCCTGCCTCTCTTCCT C, 188.60 . AS_QUALapprox=|196|0;AS_VarDP=28|7|0;BaseQRankSum=0.774;DP=54;MQRankSum=-0.261;QUALapprox=196;RAW_GT_COUNT=0,1,0;RAW_MQandDP=178276,54;ReadPosRankSum=0.551;VarDP=35 GT:AD:DP:GQ:PL:SB 0/1:28,7,0:35:99:196,0,1085,280,1112,1392:11,17,1,6 +chrX 1910676 . G *,C, 455.04 . AS_QUALapprox=|0|573|0;AS_VarDP=2|7|18|0;BaseQRankSum=0.217;DP=33;MQRankSum=-0.424;QUALapprox=785;RAW_GT_COUNT=0,0,1;RAW_MQandDP=112357,33;ReadPosRankSum=2.086;VarDP=27 GT:AD:DP:GQ:PL:SB 1/2:2,7,18,0:27:99:785,465,813,222,0,212,790,701,286,978:1,1,8,17 +chrX 1910688 . C . . END=1910759 GT:DP:GQ:MIN_DP:PL 0/0:53:96:53:0,96,1440 +chrX 1910760 . G C, 1740.06 . AS_QUALapprox=|1754|0;AS_VarDP=0|61|0;DP=65;QUALapprox=1754;RAW_GT_COUNT=0,0,1;RAW_MQandDP=227830,65;VarDP=61 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:1754,183,0,1754,183,1754:0,0,30,31 +chrX 1910761 . T . . END=1910866 GT:DP:GQ:MIN_DP:PL 0/0:80:51:80:0,51,765 +chrX 1910867 . CCT C, 31.60 . AS_QUALapprox=|39|0;AS_VarDP=15|2|0;BaseQRankSum=1.037;DP=21;MQRankSum=1.135;QUALapprox=39;RAW_GT_COUNT=0,1,0;RAW_MQandDP=58687,21;ReadPosRankSum=-1.268;VarDP=17 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:15,2,0:17:39:0|1:1910867_CCT_C:39,0,596,84,602,687:1910867:4,11,0,2 +chrX 1910870 . C . . END=1910875 GT:DP:GQ:MIN_DP:PL 0/0:17:30:17:0,30,450 +chrX 1910876 . CTTCT C, 34.60 . AS_QUALapprox=|42|0;AS_VarDP=14|2|0;BaseQRankSum=0.996;DP=16;MQRankSum=1.186;QUALapprox=42;RAW_GT_COUNT=0,1,0;RAW_MQandDP=44895,16;ReadPosRankSum=-1.785;VarDP=16 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:14,2,0:16:42:0|1:1910867_CCT_C:42,0,558,84,564,648:1910867:4,10,0,2 +chrX 1910881 . T . . END=1910882 GT:DP:GQ:MIN_DP:PL 0/0:22:33:22:0,33,495 +chrX 1910883 . C . . END=1911271 GT:DP:GQ:MIN_DP:PL 0/0:0:0:0:0,0,0 +chrX 1911272 . G . . END=1911328 GT:DP:GQ:MIN_DP:PL 0/0:15:21:8:0,21,203 +chrX 1911329 . A . . END=1911329 GT:DP:GQ:MIN_DP:PL 0/0:20:0:20:0,0,416 +chrX 1911330 . T . . END=1911338 GT:DP:GQ:MIN_DP:PL 0/0:23:36:21:0,36,540 +chrX 1911339 . T . . END=1911340 GT:DP:GQ:MIN_DP:PL 0/0:24:0:24:0,0,0 +chrX 1911341 . T . . END=1911417 GT:DP:GQ:MIN_DP:PL 0/0:33:52:33:0,52,646 +chrX 1911418 . C . . END=1911420 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,5 +chrX 1911421 . T . . END=1911422 GT:DP:GQ:MIN_DP:PL 0/0:36:20:35:0,20,764 +chrX 1911423 . T . . END=1911423 GT:DP:GQ:MIN_DP:PL 0/0:34:18:34:0,18,832 +chrX 1911424 . T . . END=1911425 GT:DP:GQ:MIN_DP:PL 0/0:34:39:33:0,39,887 +chrX 1911426 . T . . END=1911429 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,0 +chrX 1911430 . T . . END=1911439 GT:DP:GQ:MIN_DP:PL 0/0:34:40:34:0,40,891 +chrX 1911440 . T . . END=1911441 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,93 +chrX 1911442 . T . . END=1911453 GT:DP:GQ:MIN_DP:PL 0/0:33:36:33:0,36,540 +chrX 1911454 . T . . END=1911457 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,0 +chrX 1911458 . T . . END=1911505 GT:DP:GQ:MIN_DP:PL 0/0:29:27:28:0,27,729 +chrX 1911506 . T . . END=1911506 GT:DP:GQ:MIN_DP:PL 0/0:29:18:29:0,18,779 +chrX 1911507 . T . . END=1911519 GT:DP:GQ:MIN_DP:PL 0/0:27:21:27:0,21,688 +chrX 1911520 . T . . END=1911520 GT:DP:GQ:MIN_DP:PL 0/0:27:0:27:0,0,679 +chrX 1911521 . T . . END=1913662 GT:DP:GQ:MIN_DP:PL 0/0:31:36:30:0,36,610 +chrX 1913663 . AAC A, 1165.60 . AS_QUALapprox=|1173|0;AS_VarDP=33|32|0;BaseQRankSum=1.744;DP=69;MQRankSum=0.000;QUALapprox=1173;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=-1.260;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:33,32,0:65:99:1173,0,1280,1272,1375,2647:13,20,14,18 +chrX 1913666 . A . . END=1914199 GT:DP:GQ:MIN_DP:PL 0/0:63:33:59:0,33,1572 +chrX 1914200 . C T, 606.64 . AS_QUALapprox=|614|0;AS_VarDP=25|25|0;BaseQRankSum=-2.562;DP=56;MQRankSum=0.000;QUALapprox=614;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=1.271;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:25,25,0:50:99:614,0,719,689,793,1483:13,12,12,13 +chrX 1914201 . A . . END=1914469 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,111,1617 +chrX 1914470 . A G, 729.64 . AS_QUALapprox=|737|0;AS_VarDP=29|28|0;BaseQRankSum=-0.768;DP=59;MQRankSum=0.000;QUALapprox=737;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-0.312;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:29,28,0:57:99:737,0,792,824,876,1700:17,12,15,13 +chrX 1914471 . T . . END=1914746 GT:DP:GQ:MIN_DP:PL 0/0:62:98:62:0,98,1800 +chrX 1914747 . G A, 628.64 . AS_QUALapprox=|636|0;AS_VarDP=32|24|0;BaseQRankSum=1.167;DP=58;MQRankSum=0.000;QUALapprox=636;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=0.455;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:32,24,0:56:99:636,0,864,732,936,1668:14,18,10,14 +chrX 1914748 . G . . END=1915359 GT:DP:GQ:MIN_DP:PL 0/0:58:48:58:0,48,1230 +chrX 1915360 . G A, 874.64 . AS_QUALapprox=|882|0;AS_VarDP=41|33|0;BaseQRankSum=0.321;DP=78;MQRankSum=-1.087;QUALapprox=882;RAW_GT_COUNT=0,1,0;RAW_MQandDP=280336,78;ReadPosRankSum=-1.186;VarDP=74 GT:AD:DP:GQ:PL:SB 0/1:41,33,0:74:99:882,0,1143,1005,1242,2247:19,22,18,15 +chrX 1915361 . A . . END=1915858 GT:DP:GQ:MIN_DP:PL 0/0:56:65:56:0,65,1187 +chrX 1915859 . C G, 860.64 . AS_QUALapprox=|868|0;AS_VarDP=29|32|0;BaseQRankSum=1.393;DP=64;MQRankSum=0.000;QUALapprox=868;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=0.397;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:29,32,0:61:99:868,0,723,955,820,1774:16,13,16,16 +chrX 1915860 . G . . END=1916355 GT:DP:GQ:MIN_DP:PL 0/0:48:37:47:0,37,1331 +chrX 1916356 . G . . END=1916356 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,987 +chrX 1916357 . A . . END=1916360 GT:DP:GQ:MIN_DP:PL 0/0:45:97:45:0,97,1359 +chrX 1916361 . T . . END=1916361 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,982 +chrX 1916362 . T . . END=1916369 GT:DP:GQ:MIN_DP:PL 0/0:45:66:45:0,66,1305 +chrX 1916370 . T . . END=1916402 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,0 +chrX 1916403 . T . . END=1916425 GT:DP:GQ:MIN_DP:PL 0/0:41:79:41:0,79,1067 +chrX 1916426 . T . . END=1916426 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,897 +chrX 1916427 . C . . END=1916450 GT:DP:GQ:MIN_DP:PL 0/0:40:29:37:0,29,986 +chrX 1916451 . T . . END=1916455 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,709 +chrX 1916456 . T . . END=1916489 GT:DP:GQ:MIN_DP:PL 0/0:32:21:31:0,21,863 +chrX 1916490 . G . . END=1916491 GT:DP:GQ:MIN_DP:PL 0/0:29:0:29:0,0,481 +chrX 1916492 . T . . END=1916511 GT:DP:GQ:MIN_DP:PL 0/0:35:66:35:0,66,990 +chrX 1916512 . T . . END=1916516 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,276 +chrX 1916517 . T . . END=1916544 GT:DP:GQ:MIN_DP:PL 0/0:32:36:31:0,36,933 +chrX 1916545 . T . . END=1916549 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,625 +chrX 1916550 . T . . END=1916560 GT:DP:GQ:MIN_DP:PL 0/0:30:58:30:0,58,874 +chrX 1916561 . A . . END=1916561 GT:DP:GQ:MIN_DP:PL 0/0:29:0:29:0,0,542 +chrX 1916562 . C . . END=1916588 GT:DP:GQ:MIN_DP:PL 0/0:31:65:31:0,65,809 +chrX 1916589 . C . . END=1916589 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,625 +chrX 1916590 . C . . END=1916664 GT:DP:GQ:MIN_DP:PL 0/0:36:53:36:0,53,932 +chrX 1916665 . C . . END=1916665 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,928 +chrX 1916666 . T . . END=1916674 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,102,1122 +chrX 1916675 . C . . END=1916675 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,879 +chrX 1916676 . C . . END=1916697 GT:DP:GQ:MIN_DP:PL 0/0:40:67:40:0,67,1022 +chrX 1916698 . G . . END=1916698 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,800 +chrX 1916699 . T . . END=1916707 GT:DP:GQ:MIN_DP:PL 0/0:40:65:40:0,65,1110 +chrX 1916708 . C T, 1309.06 . AS_QUALapprox=|1323|0;AS_VarDP=0|34|0;DP=36;QUALapprox=1323;RAW_GT_COUNT=0,0,1;RAW_MQandDP=98781,36;VarDP=34 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,34,0:34:99:0|1:1916708_C_T:1323,102,0,1323,102,1323:1916708:0,0,19,15 +chrX 1916709 . C . . END=1916759 GT:DP:GQ:MIN_DP:PL 0/0:40:93:40:0,93,1042 +chrX 1916760 . T C, 597.64 . AS_QUALapprox=|605|0;AS_VarDP=22|23|0;BaseQRankSum=-0.666;DP=45;MQRankSum=1.908;QUALapprox=605;RAW_GT_COUNT=0,1,0;RAW_MQandDP=130058,45;ReadPosRankSum=0.898;VarDP=45 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,23,0:45:99:0|1:1916708_C_T:605,0,492,666,561,1227:1916708:14,8,13,10 +chrX 1916761 . A . . END=1916782 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,105,1285 +chrX 1916783 . C T, 1672.06 . AS_QUALapprox=|1686|0;AS_VarDP=0|41|0;DP=43;QUALapprox=1686;RAW_GT_COUNT=0,0,1;RAW_MQandDP=146014,43;VarDP=41 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,41,0:41:99:0|1:1916708_C_T:1686,123,0,1686,123,1686:1916708:0,0,25,16 +chrX 1916784 . G . . END=1917332 GT:DP:GQ:MIN_DP:PL 0/0:61:93:61:0,93,1349 +chrX 1917333 . T C, 590.64 . AS_QUALapprox=|598|0;AS_VarDP=32|25|0;BaseQRankSum=-0.345;DP=58;MQRankSum=0.000;QUALapprox=598;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=1.480;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:32,25,0:57:99:598,0,847,694,921,1615:13,19,13,12 +chrX 1917334 . T . . END=1917657 GT:DP:GQ:MIN_DP:PL 0/0:63:90:63:0,90,1635 +chrX 1917658 . A AG, 1696.03 . AS_QUALapprox=|1710|0;AS_VarDP=0|62|0;DP=66;QUALapprox=1710;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:0,62,0:62:99:1710,185,0,1710,185,1710:0,0,32,30 +chrX 1917659 . G . . END=1917733 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,112,1718 +chrX 1917734 . T C, 918.64 . AS_QUALapprox=|926|0;AS_VarDP=29|36|0;BaseQRankSum=0.636;DP=67;MQRankSum=0.000;QUALapprox=926;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=0.020;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:29,36,0:65:99:926,0,663,1012,771,1784:15,14,20,16 +chrX 1917735 . A . . END=1918006 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1918007 . A G, 1757.06 . AS_QUALapprox=|1771|0;AS_VarDP=0|53|0;DP=54;QUALapprox=1771;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1771,159,0,1771,159,1771:0,0,23,30 +chrX 1918008 . G . . END=1918248 GT:DP:GQ:MIN_DP:PL 0/0:53:49:53:0,49,1268 +chrX 1918249 . A . . END=1918249 GT:DP:GQ:MIN_DP:PL 0/0:49:8:49:0,8,1294 +chrX 1918250 . T TTTC, 1825.03 . AS_QUALapprox=|1839|0;AS_VarDP=0|41|0;DP=42;QUALapprox=1839;RAW_GT_COUNT=0,0,1;RAW_MQandDP=148084,42;VarDP=41 GT:AD:DP:GQ:PL:SB 1/1:0,41,0:41:99:1839,123,0,1839,123,1839:0,0,20,21 +chrX 1918251 . T . . END=1918315 GT:DP:GQ:MIN_DP:PL 0/0:34:65:34:0,65,913 +chrX 1918316 . G A, 448.64 . AS_QUALapprox=|456|0;AS_VarDP=16|12|0;BaseQRankSum=0.938;DP=30;MQRankSum=-0.208;QUALapprox=456;RAW_GT_COUNT=0,1,0;RAW_MQandDP=103988,30;ReadPosRankSum=-0.232;VarDP=28 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:16,12,0:28:99:0|1:1918316_G_A:456,0,615,504,651,1155:1918316:14,2,3,9 +chrX 1918317 . G . . END=1918318 GT:DP:GQ:MIN_DP:PL 0/0:27:72:27:0,72,1080 +chrX 1918319 . G T, 442.64 . AS_QUALapprox=|450|0;AS_VarDP=18|12|0;BaseQRankSum=0.492;DP=30;MQRankSum=-0.294;QUALapprox=450;RAW_GT_COUNT=0,1,0;RAW_MQandDP=103988,30;ReadPosRankSum=-0.513;VarDP=30 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:18,12,0:30:99:0|1:1918316_G_A:450,0,699,504,735,1239:1918316:14,4,3,9 +chrX 1918320 . T . . END=1918322 GT:DP:GQ:MIN_DP:PL 0/0:27:78:27:0,78,1170 +chrX 1918323 . AACG A, 445.60 . AS_QUALapprox=|453|0;AS_VarDP=17|12|0;BaseQRankSum=-1.083;DP=29;MQRankSum=-0.252;QUALapprox=453;RAW_GT_COUNT=0,1,0;RAW_MQandDP=100388,29;ReadPosRankSum=-1.092;VarDP=29 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:17,12,0:29:99:0|1:1918316_G_A:453,0,678,504,714,1218:1918316:13,4,3,9 +chrX 1918327 . G . . END=1918328 GT:DP:GQ:MIN_DP:PL 0/0:29:70:29:0,70,924 +chrX 1918329 . G GGCA, 442.60 . AS_QUALapprox=|450|0;AS_VarDP=18|12|0;BaseQRankSum=0.910;DP=30;MQRankSum=-0.294;QUALapprox=450;RAW_GT_COUNT=0,1,0;RAW_MQandDP=103988,30;ReadPosRankSum=-1.706;VarDP=30 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:18,12,0:30:99:0|1:1918316_G_A:450,0,720,504,756,1260:1918316:14,4,3,9 +chrX 1918330 . C . . END=1918330 GT:DP:GQ:MIN_DP:PL 0/0:26:75:26:0,75,1125 +chrX 1918331 . G A, 442.64 . AS_QUALapprox=|450|0;AS_VarDP=18|12|0;BaseQRankSum=1.617;DP=30;MQRankSum=-0.294;QUALapprox=450;RAW_GT_COUNT=0,1,0;RAW_MQandDP=103988,30;ReadPosRankSum=-1.320;VarDP=30 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:18,12,0:30:99:0|1:1918316_G_A:450,0,720,504,756,1260:1918316:14,4,3,9 +chrX 1918332 . A G, 358.64 . AS_QUALapprox=|366|0;AS_VarDP=18|10|0;BaseQRankSum=1.615;DP=28;MQRankSum=-0.429;QUALapprox=366;RAW_GT_COUNT=0,1,0;RAW_MQandDP=96788,28;ReadPosRankSum=-1.512;VarDP=28 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:18,10,0:28:99:0|1:1918316_G_A:366,0,726,420,756,1176:1918316:14,4,2,8 +chrX 1918333 . T . . END=1918335 GT:DP:GQ:MIN_DP:PL 0/0:28:78:28:0,78,1170 +chrX 1918336 . T C, 355.64 . AS_QUALapprox=|363|0;AS_VarDP=19|10|0;BaseQRankSum=-1.215;DP=29;MQRankSum=-0.470;QUALapprox=363;RAW_GT_COUNT=0,1,0;RAW_MQandDP=100388,29;ReadPosRankSum=-1.906;VarDP=29 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:19,10,0:29:99:0|1:1918316_G_A:363,0,768,420,798,1218:1918316:15,4,2,8 +chrX 1918337 . G . . END=1918355 GT:DP:GQ:MIN_DP:PL 0/0:29:66:29:0,66,990 +chrX 1918356 . T C, 926.06 . AS_QUALapprox=|940|0;AS_VarDP=0|27|0;DP=28;QUALapprox=940;RAW_GT_COUNT=0,0,1;RAW_MQandDP=95684,28;VarDP=27 GT:AD:DP:GQ:PL:SB 1/1:0,27,0:27:81:940,81,0,940,81,940:0,0,17,10 +chrX 1918357 . T . . END=1918358 GT:DP:GQ:MIN_DP:PL 0/0:28:72:28:0,72,1080 +chrX 1918359 . T C, 133.64 . AS_QUALapprox=|141|0;AS_VarDP=23|5|0;BaseQRankSum=0.300;DP=28;MQRankSum=-1.209;QUALapprox=141;RAW_GT_COUNT=0,1,0;RAW_MQandDP=95684,28;ReadPosRankSum=-2.391;VarDP=28 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,5,0:28:99:0|1:1918316_G_A:141,0,951,210,966,1176:1918316:15,8,2,3 +chrX 1918360 . T C, 133.64 . AS_QUALapprox=|141|0;AS_VarDP=23|5|0;BaseQRankSum=1.184;DP=28;MQRankSum=-1.209;QUALapprox=141;RAW_GT_COUNT=0,1,0;RAW_MQandDP=95684,28;ReadPosRankSum=-2.527;VarDP=28 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,5,0:28:99:0|1:1918316_G_A:141,0,951,210,966,1176:1918316:15,8,2,3 +chrX 1918361 . G . . END=1918550 GT:DP:GQ:MIN_DP:PL 0/0:31:33:26:0,33,748 +chrX 1918551 . G . . END=1918558 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,894 +chrX 1918559 . A . . END=1918559 GT:DP:GQ:MIN_DP:PL 0/0:35:71:35:0,71,1117 +chrX 1918560 . G . . END=1918568 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,650 +chrX 1918569 . T . . END=1918569 GT:DP:GQ:MIN_DP:PL 0/0:36:74:36:0,74,1162 +chrX 1918570 . C . . END=1918572 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,659 +chrX 1918573 . T . . END=1918573 GT:DP:GQ:MIN_DP:PL 0/0:38:90:38:0,90,1252 +chrX 1918574 . G . . END=1918579 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,505 +chrX 1918580 . C . . END=1918580 GT:DP:GQ:MIN_DP:PL 0/0:39:82:39:0,82,1216 +chrX 1918581 . G . . END=1918587 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,501 +chrX 1918588 . T . . END=1918588 GT:DP:GQ:MIN_DP:PL 0/0:44:97:44:0,97,1390 +chrX 1918589 . A . . END=1918601 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,377 +chrX 1918602 . T . . END=1918603 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,104,1499 +chrX 1918604 . T . . END=1918605 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,446 +chrX 1918606 . T . . END=1918606 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,101,1465 +chrX 1918607 . C . . END=1918611 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,336 +chrX 1918612 . T . . END=1918612 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,103,1469 +chrX 1918613 . G . . END=1918613 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,308 +chrX 1918614 . C . . END=1918614 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,120,1800 +chrX 1918615 . C . . END=1918615 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,307 +chrX 1918616 . T . . END=1918616 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,120,1800 +chrX 1918617 . T . . END=1918617 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,436 +chrX 1918618 . T . . END=1918619 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,120,1800 +chrX 1918620 . T . . END=1918620 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,501 +chrX 1918621 . T . . END=1918626 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 1918627 . T . . END=1918627 GT:DP:GQ:MIN_DP:PL 0/0:52:0:52:0,0,387 +chrX 1918628 . A . . END=1918635 GT:DP:GQ:MIN_DP:PL 0/0:51:94:51:0,94,1549 +chrX 1918636 . T . . END=1918636 GT:DP:GQ:MIN_DP:PL 0/0:54:0:54:0,0,544 +chrX 1918637 . C . . END=1918774 GT:DP:GQ:MIN_DP:PL 0/0:58:72:58:0,72,1414 +chrX 1918775 . A . . END=1918775 GT:DP:GQ:MIN_DP:PL 0/0:49:8:49:0,8,1294 +chrX 1918776 . T . . END=1918796 GT:DP:GQ:MIN_DP:PL 0/0:47:63:47:0,63,945 +chrX 1918797 . G T, 78.64 . AS_QUALapprox=|86|0;AS_VarDP=26|14|0;BaseQRankSum=0.018;DP=47;MQRankSum=0.786;QUALapprox=86;RAW_GT_COUNT=0,1,0;RAW_MQandDP=167200,47;ReadPosRankSum=0.695;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:26,14,0:40:86:86,0,620,162,656,818:7,19,13,1 +chrX 1918798 . C . . END=1918857 GT:DP:GQ:MIN_DP:PL 0/0:26:35:26:0,35,717 +chrX 1918858 . G A, 585.64 . AS_QUALapprox=|593|0;AS_VarDP=23|23|0;BaseQRankSum=0.671;DP=48;MQRankSum=0.000;QUALapprox=593;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=1.198;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:23,23,0:46:99:593,0,572,661,641,1301:9,14,14,9 +chrX 1918859 . T . . END=1918982 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,111,1463 +chrX 1918983 . TTTATTTATTTATTTA T, 886.60 . AS_QUALapprox=|894|0;AS_VarDP=35|25|0;BaseQRankSum=0.246;DP=68;MQRankSum=0.000;QUALapprox=894;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=0.045;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:35,25,0:60:99:894,0,1237,1000,1314,2314:14,21,17,8 +chrX 1918999 . T . . END=1919418 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,118,1484 +chrX 1919419 . C T, 826.64 . AS_QUALapprox=|834|0;AS_VarDP=22|31|0;BaseQRankSum=0.694;DP=57;MQRankSum=0.000;QUALapprox=834;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=0.054;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:22,31,0:53:99:834,0,541,900,633,1533:13,9,13,18 +chrX 1919420 . G . . END=1919816 GT:DP:GQ:MIN_DP:PL 0/0:63:86:63:0,86,1658 +chrX 1919817 . AACACACAC A,AACACACACAC, 995.02 . AS_QUALapprox=|582|424|0;AS_VarDP=1|17|17|0;BaseQRankSum=-0.518;DP=71;MQRankSum=0.000;QUALapprox=1012;RAW_GT_COUNT=0,0,1;RAW_MQandDP=253600,71;ReadPosRankSum=1.635;VarDP=35 GT:AD:DP:GQ:PL:SB 1/2:1,17,17,0:35:99:1012,430,892,610,0,588,1077,728,657,1323:1,0,20,14 +chrX 1919826 . A . . END=1919900 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,114,1710 +chrX 1919901 . T C, 608.64 . AS_QUALapprox=|616|0;AS_VarDP=35|26|0;BaseQRankSum=-0.981;DP=64;MQRankSum=0.000;QUALapprox=616;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=0.182;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:35,26,0:61:99:616,0,969,721,1046,1767:22,13,17,9 +chrX 1919902 . G . . END=1919986 GT:DP:GQ:MIN_DP:PL 0/0:77:49:77:0,49,1800 +chrX 1919987 . G . . END=1919988 GT:DP:GQ:MIN_DP:PL 0/0:93:0:93:0,0,2386 +chrX 1919989 . C . . END=1919990 GT:DP:GQ:MIN_DP:PL 0/0:91:99:91:0,120,1800 +chrX 1919991 . G . . END=1919991 GT:DP:GQ:MIN_DP:PL 0/0:97:0:97:0,0,2596 +chrX 1919992 . A . . END=1919992 GT:DP:GQ:MIN_DP:PL 0/0:96:99:96:0,120,1800 +chrX 1919993 . T . . END=1919998 GT:DP:GQ:MIN_DP:PL 0/0:95:0:95:0,0,2261 +chrX 1919999 . A . . END=1920005 GT:DP:GQ:MIN_DP:PL 0/0:94:99:94:0,120,1800 +chrX 1920006 . G . . END=1920006 GT:DP:GQ:MIN_DP:PL 0/0:95:0:95:0,0,2159 +chrX 1920007 . T . . END=1920023 GT:DP:GQ:MIN_DP:PL 0/0:91:99:91:0,120,1800 +chrX 1920024 . G . . END=1920025 GT:DP:GQ:MIN_DP:PL 0/0:89:0:89:0,0,1830 +chrX 1920026 . T . . END=1920033 GT:DP:GQ:MIN_DP:PL 0/0:92:99:92:0,120,1800 +chrX 1920034 . A . . END=1920034 GT:DP:GQ:MIN_DP:PL 0/0:93:0:93:0,0,2059 +chrX 1920035 . C . . END=1920047 GT:DP:GQ:MIN_DP:PL 0/0:96:99:96:0,120,1800 +chrX 1920048 . C . . END=1920048 GT:DP:GQ:MIN_DP:PL 0/0:98:0:98:0,0,2102 +chrX 1920049 . G . . END=1920081 GT:DP:GQ:MIN_DP:PL 0/0:100:99:100:0,120,1800 +chrX 1920082 . C . . END=1920082 GT:DP:GQ:MIN_DP:PL 0/0:99:0:99:0,0,2177 +chrX 1920083 . A . . END=1920091 GT:DP:GQ:MIN_DP:PL 0/0:104:99:104:0,120,1800 +chrX 1920092 . C . . END=1920092 GT:DP:GQ:MIN_DP:PL 0/0:104:0:104:0,0,2180 +chrX 1920093 . G . . END=1920125 GT:DP:GQ:MIN_DP:PL 0/0:103:99:103:0,120,1800 +chrX 1920126 . G . . END=1920127 GT:DP:GQ:MIN_DP:PL 0/0:95:0:95:0,0,1731 +chrX 1920128 . A . . END=1920129 GT:DP:GQ:MIN_DP:PL 0/0:94:99:94:0,120,1800 +chrX 1920130 . T . . END=1920130 GT:DP:GQ:MIN_DP:PL 0/0:102:0:102:0,0,2293 +chrX 1920131 . G . . END=1920134 GT:DP:GQ:MIN_DP:PL 0/0:95:99:95:0,120,1800 +chrX 1920135 . A . . END=1920135 GT:DP:GQ:MIN_DP:PL 0/0:90:12:90:0,12,2402 +chrX 1920136 . T . . END=1920148 GT:DP:GQ:MIN_DP:PL 0/0:93:30:88:0,30,1800 +chrX 1920149 . C . . END=1920154 GT:DP:GQ:MIN_DP:PL 0/0:86:0:86:0,0,898 +chrX 1920155 . A . . END=1920155 GT:DP:GQ:MIN_DP:PL 0/0:90:27:90:0,27,2471 +chrX 1920156 . G . . END=1920157 GT:DP:GQ:MIN_DP:PL 0/0:88:0:88:0,0,2124 +chrX 1920158 . T . . END=1920158 GT:DP:GQ:MIN_DP:PL 0/0:94:39:94:0,39,2550 +chrX 1920159 . T . . END=1920162 GT:DP:GQ:MIN_DP:PL 0/0:95:0:95:0,0,1744 +chrX 1920163 . T . . END=1920164 GT:DP:GQ:MIN_DP:PL 0/0:103:36:100:0,36,2728 +chrX 1920165 . T . . END=1920165 GT:DP:GQ:MIN_DP:PL 0/0:102:0:102:0,0,2282 +chrX 1920166 . T . . END=1920167 GT:DP:GQ:MIN_DP:PL 0/0:104:75:104:0,75,1800 +chrX 1920168 . G . . END=1920168 GT:DP:GQ:MIN_DP:PL 0/0:96:0:96:0,0,1885 +chrX 1920169 . T . . END=1920170 GT:DP:GQ:MIN_DP:PL 0/0:101:35:101:0,35,2734 +chrX 1920171 . A . . END=1920172 GT:DP:GQ:MIN_DP:PL 0/0:92:0:92:0,0,1896 +chrX 1920173 . T . . END=1920173 GT:DP:GQ:MIN_DP:PL 0/0:93:57:93:0,57,2596 +chrX 1920174 . T . . END=1920178 GT:DP:GQ:MIN_DP:PL 0/0:93:0:93:0,0,2134 +chrX 1920179 . A . . END=1920181 GT:DP:GQ:MIN_DP:PL 0/0:99:22:98:0,22,1800 +chrX 1920182 . A . . END=1920185 GT:DP:GQ:MIN_DP:PL 0/0:90:0:90:0,0,0 +chrX 1920186 . A . . END=1920186 GT:DP:GQ:MIN_DP:PL 0/0:89:99:89:0,120,1800 +chrX 1920187 . C . . END=1920202 GT:DP:GQ:MIN_DP:PL 0/0:88:0:88:0,0,0 +chrX 1920203 . T . . END=1920203 GT:DP:GQ:MIN_DP:PL 0/0:92:99:92:0,120,1800 +chrX 1920204 . G . . END=1920207 GT:DP:GQ:MIN_DP:PL 0/0:86:0:86:0,0,203 +chrX 1920208 . A . . END=1920208 GT:DP:GQ:MIN_DP:PL 0/0:91:99:91:0,120,1800 +chrX 1920209 . G . . END=1920216 GT:DP:GQ:MIN_DP:PL 0/0:86:0:86:0,0,954 +chrX 1920217 . T . . END=1920218 GT:DP:GQ:MIN_DP:PL 0/0:93:99:93:0,114,1800 +chrX 1920219 . T . . END=1920219 GT:DP:GQ:MIN_DP:PL 0/0:89:0:89:0,0,2019 +chrX 1920220 . T . . END=1920220 GT:DP:GQ:MIN_DP:PL 0/0:91:30:91:0,30,2476 +chrX 1920221 . T . . END=1920222 GT:DP:GQ:MIN_DP:PL 0/0:89:0:89:0,0,1201 +chrX 1920223 . T . . END=1920223 GT:DP:GQ:MIN_DP:PL 0/0:89:20:89:0,20,2377 +chrX 1920224 . A . . END=1920224 GT:DP:GQ:MIN_DP:PL 0/0:93:0:93:0,0,2356 +chrX 1920225 . T . . END=1920225 GT:DP:GQ:MIN_DP:PL 0/0:90:47:90:0,47,2452 +chrX 1920226 . T . . END=1920226 GT:DP:GQ:MIN_DP:PL 0/0:100:0:100:0,0,2450 +chrX 1920227 . T . . END=1920227 GT:DP:GQ:MIN_DP:PL 0/0:90:33:90:0,33,2403 +chrX 1920228 . T . . END=1920228 GT:DP:GQ:MIN_DP:PL 0/0:87:0:87:0,0,1692 +chrX 1920229 . T . . END=1920229 GT:DP:GQ:MIN_DP:PL 0/0:100:99:100:0,120,1800 +chrX 1920230 . G . . END=1920230 GT:DP:GQ:MIN_DP:PL 0/0:83:0:83:0,0,1564 +chrX 1920231 . T . . END=1920231 GT:DP:GQ:MIN_DP:PL 0/0:97:23:97:0,23,2545 +chrX 1920232 . T . . END=1920235 GT:DP:GQ:MIN_DP:PL 0/0:88:0:88:0,0,1667 +chrX 1920236 . T . . END=1920236 GT:DP:GQ:MIN_DP:PL 0/0:92:53:92:0,53,2561 +chrX 1920237 . T . . END=1920237 GT:DP:GQ:MIN_DP:PL 0/0:89:0:89:0,0,1902 +chrX 1920238 . A . . END=1920245 GT:DP:GQ:MIN_DP:PL 0/0:109:48:109:0,48,1800 +chrX 1920246 . G . . END=1920247 GT:DP:GQ:MIN_DP:PL 0/0:101:0:101:0,0,1280 +chrX 1920248 . A . . END=1920250 GT:DP:GQ:MIN_DP:PL 0/0:106:90:106:0,90,1800 +chrX 1920251 . G . . END=1920251 GT:DP:GQ:MIN_DP:PL 0/0:93:0:93:0,0,1463 +chrX 1920252 . T . . END=1920253 GT:DP:GQ:MIN_DP:PL 0/0:102:99:102:0,120,1800 +chrX 1920254 . C . . END=1920254 GT:DP:GQ:MIN_DP:PL 0/0:89:0:89:0,0,1572 +chrX 1920255 . A . . END=1920261 GT:DP:GQ:MIN_DP:PL 0/0:104:99:104:0,120,1800 +chrX 1920262 . A . . END=1920262 GT:DP:GQ:MIN_DP:PL 0/0:90:0:90:0,0,2222 +chrX 1920263 . A . . END=1920264 GT:DP:GQ:MIN_DP:PL 0/0:105:99:105:0,120,1800 +chrX 1920265 . T . . END=1920265 GT:DP:GQ:MIN_DP:PL 0/0:91:0:91:0,0,2148 +chrX 1920266 . G . . END=1920271 GT:DP:GQ:MIN_DP:PL 0/0:102:99:102:0,120,1800 +chrX 1920272 . A . . END=1920273 GT:DP:GQ:MIN_DP:PL 0/0:94:0:94:0,0,1987 +chrX 1920274 . T . . END=1920276 GT:DP:GQ:MIN_DP:PL 0/0:103:99:103:0,120,1800 +chrX 1920277 . G . . END=1920277 GT:DP:GQ:MIN_DP:PL 0/0:92:0:92:0,0,1993 +chrX 1920278 . T . . END=1920281 GT:DP:GQ:MIN_DP:PL 0/0:104:99:104:0,120,1800 +chrX 1920282 . A . . END=1920283 GT:DP:GQ:MIN_DP:PL 0/0:93:0:93:0,0,2148 +chrX 1920284 . T . . END=1920287 GT:DP:GQ:MIN_DP:PL 0/0:99:99:99:0,120,1800 +chrX 1920288 . A . . END=1920289 GT:DP:GQ:MIN_DP:PL 0/0:93:0:93:0,0,1924 +chrX 1920290 . T . . END=1920291 GT:DP:GQ:MIN_DP:PL 0/0:93:99:93:0,120,1800 +chrX 1920292 . T . . END=1920295 GT:DP:GQ:MIN_DP:PL 0/0:90:0:90:0,0,1823 +chrX 1920296 . T . . END=1920297 GT:DP:GQ:MIN_DP:PL 0/0:86:99:86:0,120,1800 +chrX 1920298 . A . . END=1920304 GT:DP:GQ:MIN_DP:PL 0/0:82:0:82:0,0,1393 +chrX 1920305 . A . . END=1920305 GT:DP:GQ:MIN_DP:PL 0/0:83:99:83:0,120,1800 +chrX 1920306 . T . . END=1920306 GT:DP:GQ:MIN_DP:PL 0/0:77:0:77:0,0,1444 +chrX 1920307 . A . . END=1920309 GT:DP:GQ:MIN_DP:PL 0/0:77:89:77:0,89,1800 +chrX 1920310 . A . . END=1920311 GT:DP:GQ:MIN_DP:PL 0/0:75:0:75:0,0,1662 +chrX 1920312 . A . . END=1920312 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,120,1800 +chrX 1920313 . C . . END=1920313 GT:DP:GQ:MIN_DP:PL 0/0:71:0:71:0,0,1671 +chrX 1920314 . T . . END=1920314 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,120,1800 +chrX 1920315 . G . . END=1920318 GT:DP:GQ:MIN_DP:PL 0/0:73:0:73:0,0,1612 +chrX 1920319 . A . . END=1920319 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,120,1800 +chrX 1920320 . T . . END=1920321 GT:DP:GQ:MIN_DP:PL 0/0:73:6:73:0,6,1854 +chrX 1920322 . T . . END=1920322 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,120,1800 +chrX 1920323 . C . . END=1920323 GT:DP:GQ:MIN_DP:PL 0/0:73:0:73:0,0,1830 +chrX 1920324 . A . . END=1920325 GT:DP:GQ:MIN_DP:PL 0/0:73:99:73:0,120,1800 +chrX 1920326 . A . . END=1920326 GT:DP:GQ:MIN_DP:PL 0/0:72:0:72:0,0,1815 +chrX 1920327 . A . . END=1920327 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,120,1800 +chrX 1920328 . T . . END=1920329 GT:DP:GQ:MIN_DP:PL 0/0:72:0:72:0,0,1764 +chrX 1920330 . G . . END=1920331 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,120,1800 +chrX 1920332 . T . . END=1920332 GT:DP:GQ:MIN_DP:PL 0/0:74:0:74:0,0,1885 +chrX 1920333 . C . . END=1920333 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 1920334 . A . . END=1920334 GT:DP:GQ:MIN_DP:PL 0/0:75:0:75:0,0,1840 +chrX 1920335 . G . . END=1920337 GT:DP:GQ:MIN_DP:PL 0/0:74:99:74:0,120,1800 +chrX 1920338 . T . . END=1920338 GT:DP:GQ:MIN_DP:PL 0/0:73:0:73:0,0,1791 +chrX 1920339 . A . . END=1920339 GT:DP:GQ:MIN_DP:PL 0/0:73:99:73:0,120,1800 +chrX 1920340 . G . . END=1920342 GT:DP:GQ:MIN_DP:PL 0/0:70:0:70:0,0,1667 +chrX 1920343 . C . . END=1920343 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 1920344 . C . . END=1920344 GT:DP:GQ:MIN_DP:PL 0/0:68:0:68:0,0,1696 +chrX 1920345 . A . . END=1920345 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1920346 . G . . END=1920346 GT:DP:GQ:MIN_DP:PL 0/0:67:0:67:0,0,1631 +chrX 1920347 . A . . END=1920347 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 1920348 . C . . END=1920349 GT:DP:GQ:MIN_DP:PL 0/0:65:0:65:0,0,1641 +chrX 1920350 . C . . END=1920351 GT:DP:GQ:MIN_DP:PL 0/0:67:24:66:0,24,1704 +chrX 1920352 . C . . END=1920352 GT:DP:GQ:MIN_DP:PL 0/0:67:13:67:0,13,1752 +chrX 1920353 . T . . END=1920355 GT:DP:GQ:MIN_DP:PL 0/0:66:25:66:0,25,1776 +chrX 1920356 . C . . END=1920356 GT:DP:GQ:MIN_DP:PL 0/0:63:15:63:0,15,1632 +chrX 1920357 . T . . END=1920362 GT:DP:GQ:MIN_DP:PL 0/0:67:27:66:0,27,1800 +chrX 1920363 . C . . END=1920363 GT:DP:GQ:MIN_DP:PL 0/0:68:6:68:0,6,1796 +chrX 1920364 . T . . END=1920369 GT:DP:GQ:MIN_DP:PL 0/0:66:25:66:0,25,1800 +chrX 1920370 . C G, 625.64 . AS_QUALapprox=|633|0;AS_VarDP=34|26|0;BaseQRankSum=-0.111;DP=65;MQRankSum=0.000;QUALapprox=633;RAW_GT_COUNT=0,1,0;RAW_MQandDP=232336,65;ReadPosRankSum=0.970;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:34,26,0:60:99:633,0,921,735,998,1733:19,15,10,16 +chrX 1920371 . C . . END=1920605 GT:DP:GQ:MIN_DP:PL 0/0:56:42:56:0,42,1145 +chrX 1920606 . C . . END=1920606 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,989 +chrX 1920607 . A . . END=1922586 GT:DP:GQ:MIN_DP:PL 0/0:58:55:58:0,55,1103 +chrX 1922587 . CT C, 29.60 . AS_QUALapprox=|37|0;AS_VarDP=17|6|0;BaseQRankSum=1.137;DP=42;MQRankSum=1.137;QUALapprox=37;RAW_GT_COUNT=0,1,0;RAW_MQandDP=139941,42;ReadPosRankSum=0.000;VarDP=23 GT:AD:DP:GQ:PL:SB 0/1:17,6,0:23:37:37,0,255,88,272,360:11,6,3,3 +chrX 1922589 . T . . END=1922611 GT:DP:GQ:MIN_DP:PL 0/0:50:63:50:0,63,945 +chrX 1922612 . G . . END=1922612 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,759 +chrX 1922613 . A . . END=1922617 GT:DP:GQ:MIN_DP:PL 0/0:29:51:29:0,51,884 +chrX 1922618 . G . . END=1922618 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,785 +chrX 1922619 . A . . END=1923124 GT:DP:GQ:MIN_DP:PL 0/0:24:37:23:0,37,659 +chrX 1923125 . C G, 1420.06 . AS_QUALapprox=|1434|0;AS_VarDP=0|45|0;DP=46;QUALapprox=1434;RAW_GT_COUNT=0,0,1;RAW_MQandDP=156682,46;VarDP=45 GT:AD:DP:GQ:PL:SB 1/1:0,45,0:45:99:1434,134,0,1434,134,1434:0,0,20,25 +chrX 1923126 . T . . END=1923734 GT:DP:GQ:MIN_DP:PL 0/0:60:96:60:0,96,1349 +chrX 1923735 . C T, 846.64 . AS_QUALapprox=|854|0;AS_VarDP=9|29|0;BaseQRankSum=-0.176;DP=42;MQRankSum=1.857;QUALapprox=854;RAW_GT_COUNT=0,1,0;RAW_MQandDP=150001,42;ReadPosRankSum=0.137;VarDP=38 GT:AD:DP:GQ:PL:SB 0/1:9,29,0:38:99:854,0,189,881,276,1157:4,5,11,18 +chrX 1923736 . G . . END=1923856 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,100,1394 +chrX 1923857 . C G, 708.64 . AS_QUALapprox=|716|0;AS_VarDP=19|25|0;BaseQRankSum=0.861;DP=46;MQRankSum=0.000;QUALapprox=716;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=-1.470;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:19,25,0:44:99:716,0,483,773,559,1331:7,12,12,13 +chrX 1923858 . C . . END=1924255 GT:DP:GQ:MIN_DP:PL 0/0:54:36:54:0,36,1314 +chrX 1924256 . G . . END=1924256 GT:DP:GQ:MIN_DP:PL 0/0:60:0:60:0,0,1519 +chrX 1924257 . T . . END=1925649 GT:DP:GQ:MIN_DP:PL 0/0:60:62:60:0,62,1161 +chrX 1925650 . T C, 693.64 . AS_QUALapprox=|701|0;AS_VarDP=18|26|0;BaseQRankSum=-1.768;DP=44;MQRankSum=0.000;QUALapprox=701;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=-0.561;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:18,26,0:44:99:701,0,483,756,562,1317:11,7,16,10 +chrX 1925651 . G . . END=1925733 GT:DP:GQ:MIN_DP:PL 0/0:41:24:37:0,24,945 +chrX 1925734 . GAA G,GAAAAAA, 25.61 . AS_QUALapprox=|33|33|0;AS_VarDP=14|7|5|0;BaseQRankSum=-0.290;DP=48;MQRankSum=0.000;QUALapprox=33;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=-0.726;VarDP=26 GT:AD:DP:GQ:PL:SB 0/1:14,7,5,0:26:0:33,0,688,0,297,570,125,580,532,750:8,6,5,7 +chrX 1925737 . A . . END=1925759 GT:DP:GQ:MIN_DP:PL 0/0:47:84:47:0,84,1260 +chrX 1925760 . G . . END=1925760 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,918 +chrX 1925761 . A . . END=1925777 GT:DP:GQ:MIN_DP:PL 0/0:52:61:52:0,61,1419 +chrX 1925778 . T . . END=1925778 GT:DP:GQ:MIN_DP:PL 0/0:52:4:52:0,4,1352 +chrX 1925779 . G . . END=1925780 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,111,1508 +chrX 1925781 . G . . END=1925781 GT:DP:GQ:MIN_DP:PL 0/0:52:0:52:0,0,1370 +chrX 1925782 . A . . END=1925783 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 1925784 . G . . END=1925784 GT:DP:GQ:MIN_DP:PL 0/0:52:12:52:0,12,1348 +chrX 1925785 . A . . END=1925788 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 1925789 . T . . END=1925789 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,1255 +chrX 1925790 . G . . END=1925873 GT:DP:GQ:MIN_DP:PL 0/0:56:82:56:0,82,1313 +chrX 1925874 . C T, 2100.06 . AS_QUALapprox=|2114|0;AS_VarDP=1|64|0;BaseQRankSum=2.991;DP=67;MQRankSum=0.000;QUALapprox=2114;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;ReadPosRankSum=1.707;VarDP=65 GT:AD:DP:GQ:PL:SB 1/1:1,64,0:65:99:2114,185,0,2117,192,2124:0,1,36,28 +chrX 1925875 . C . . END=1926856 GT:DP:GQ:MIN_DP:PL 0/0:53:55:53:0,55,1129 +chrX 1926857 . C CTT, 45.60 . AS_QUALapprox=|53|0;AS_VarDP=4|4|0;BaseQRankSum=0.000;DP=38;MQRankSum=-0.328;QUALapprox=53;RAW_GT_COUNT=0,1,0;RAW_MQandDP=126186,38;ReadPosRankSum=0.272;VarDP=8 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:4,4,0:8:53:0|1:1926857_C_CTT:53,0,111,66,124,190:1926857:3,1,3,1 +chrX 1926858 . T . . END=1926881 GT:DP:GQ:MIN_DP:PL 0/0:38:21:32:0,21,315 +chrX 1926882 . A . . END=1926882 GT:DP:GQ:MIN_DP:PL 0/0:34:18:34:0,18,892 +chrX 1926883 . G . . END=1927183 GT:DP:GQ:MIN_DP:PL 0/0:35:31:35:0,31,943 +chrX 1927184 . GA G, 535.60 . AS_QUALapprox=|543|0;AS_VarDP=18|24|0;BaseQRankSum=-1.774;DP=56;MQRankSum=-0.818;QUALapprox=543;RAW_GT_COUNT=0,1,0;RAW_MQandDP=199604,56;ReadPosRankSum=0.432;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:18,24,0:42:99:543,0,351,597,424,1020:10,8,7,17 +chrX 1927186 . A . . END=1927598 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,109,1623 +chrX 1927599 . G A, 571.64 . AS_QUALapprox=|579|0;AS_VarDP=32|23|0;BaseQRankSum=0.393;DP=59;MQRankSum=0.000;QUALapprox=579;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=2.049;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:32,23,0:55:99:579,0,862,674,931,1605:19,13,14,9 +chrX 1927600 . A . . END=1927706 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 1927707 . A C, 841.64 . AS_QUALapprox=|849|0;AS_VarDP=36|24|0;BaseQRankSum=-0.268;DP=60;MQRankSum=0.000;QUALapprox=849;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=-0.016;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:36,24,0:60:99:0|1:1927707_A_C:849,0,1374,957,1446,2403:1927707:14,22,13,11 +chrX 1927708 . C . . END=1927728 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1927729 . C T, 892.64 . AS_QUALapprox=|900|0;AS_VarDP=37|26|0;BaseQRankSum=0.985;DP=63;MQRankSum=0.000;QUALapprox=900;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=0.093;VarDP=63 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:37,26,0:63:99:0|1:1927707_A_C:900,0,1399,1010,1478,2488:1927707:17,20,13,13 +chrX 1927730 . G . . END=1927764 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1927765 . CT C, 341.60 . AS_QUALapprox=|349|0;AS_VarDP=25|19|0;BaseQRankSum=-1.176;DP=58;MQRankSum=0.000;QUALapprox=349;RAW_GT_COUNT=0,1,0;RAW_MQandDP=206224,58;ReadPosRankSum=0.012;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:25,19,0:44:99:349,0,516,424,572,997:10,15,9,10 +chrX 1927767 . T . . END=1928279 GT:DP:GQ:MIN_DP:PL 0/0:61:98:61:0,98,1464 +chrX 1928280 . G A, 748.64 . AS_QUALapprox=|756|0;AS_VarDP=32|30|0;BaseQRankSum=0.348;DP=67;MQRankSum=0.000;QUALapprox=756;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=-0.958;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:32,30,0:62:99:756,0,806,852,896,1748:16,16,16,14 +chrX 1928281 . G . . END=1928404 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,108,1652 +chrX 1928405 . C CT, 348.60 . AS_QUALapprox=|356|0;AS_VarDP=13|19|0;BaseQRankSum=-0.558;DP=56;MQRankSum=-1.443;QUALapprox=356;RAW_GT_COUNT=0,1,0;RAW_MQandDP=193600,56;ReadPosRankSum=0.691;VarDP=32 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:13,19,0:32:99:0|1:1928405_C_CT:356,0,173,395,230,625:1928405:5,8,14,5 +chrX 1928406 . T . . END=1928644 GT:DP:GQ:MIN_DP:PL 0/0:54:25:51:0,25,1125 +chrX 1928645 . G C, 806.64 . AS_QUALapprox=|814|0;AS_VarDP=25|28|0;BaseQRankSum=1.891;DP=55;MQRankSum=0.000;QUALapprox=814;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=0.232;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:25,28,0:53:99:814,0,664,889,748,1638:14,11,13,15 +chrX 1928646 . T . . END=1928756 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1928757 . C G, 960.64 . AS_QUALapprox=|968|0;AS_VarDP=32|37|0;BaseQRankSum=-1.519;DP=74;MQRankSum=0.000;QUALapprox=968;RAW_GT_COUNT=0,1,0;RAW_MQandDP=266400,74;ReadPosRankSum=3.317;VarDP=69 GT:AD:DP:GQ:PL:SB 0/1:32,37,0:69:99:968,0,835,1063,946,2009:19,13,16,21 +chrX 1928758 . C . . END=1929321 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 1929322 . C CT, 303.60 . AS_QUALapprox=|311|0;AS_VarDP=17|22|0;BaseQRankSum=1.829;DP=54;MQRankSum=0.000;QUALapprox=311;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=0.269;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:17,22,0:39:99:311,0,231,362,296,658:6,11,12,10 +chrX 1929323 . T . . END=1929341 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 1929342 . G . . END=1929342 GT:DP:GQ:MIN_DP:PL 0/0:63:0:63:0,0,1105 +chrX 1929343 . A . . END=1929360 GT:DP:GQ:MIN_DP:PL 0/0:57:33:54:0,33,1428 +chrX 1929361 . G . . END=1929361 GT:DP:GQ:MIN_DP:PL 0/0:54:0:54:0,0,1300 +chrX 1929362 . T . . END=1929460 GT:DP:GQ:MIN_DP:PL 0/0:49:86:49:0,86,1259 +chrX 1929461 . A G, 833.64 . AS_QUALapprox=|841|0;AS_VarDP=27|30|0;BaseQRankSum=1.577;DP=59;MQRankSum=-1.931;QUALapprox=841;RAW_GT_COUNT=0,1,0;RAW_MQandDP=207802,59;ReadPosRankSum=0.008;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:27,30,0:57:99:841,0,696,923,786,1709:15,12,16,14 +chrX 1929462 . T . . END=1929912 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 1929913 . G A, 1096.64 . AS_QUALapprox=|1104|0;AS_VarDP=34|38|0;BaseQRankSum=2.698;DP=76;MQRankSum=0.000;QUALapprox=1104;RAW_GT_COUNT=0,1,0;RAW_MQandDP=273600,76;ReadPosRankSum=1.512;VarDP=72 GT:AD:DP:GQ:PL:SB 0/1:34,38,0:72:99:1104,0,905,1206,1020,2226:14,20,21,17 +chrX 1929914 . T . . END=1930050 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 1930051 . T A, 915.64 . AS_QUALapprox=|923|0;AS_VarDP=21|35|0;BaseQRankSum=-1.313;DP=60;MQRankSum=-0.738;QUALapprox=923;RAW_GT_COUNT=0,1,0;RAW_MQandDP=215425,60;ReadPosRankSum=-0.652;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:21,35,0:56:99:923,0,517,986,622,1608:9,12,20,15 +chrX 1930052 . C . . END=1930179 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 1930180 . T A, 648.64 . AS_QUALapprox=|656|0;AS_VarDP=29|25|0;BaseQRankSum=0.925;DP=58;MQRankSum=0.000;QUALapprox=656;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=0.581;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:29,25,0:54:99:656,0,756,743,831,1574:17,12,14,11 +chrX 1930181 . G . . END=1930677 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 1930678 . G A, 897.64 . AS_QUALapprox=|905|0;AS_VarDP=34|33|0;BaseQRankSum=2.891;DP=67;MQRankSum=0.000;QUALapprox=905;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=1.318;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:34,33,0:67:99:905,0,830,1007,929,1937:16,18,17,16 +chrX 1930679 . T . . END=1931113 GT:DP:GQ:MIN_DP:PL 0/0:60:87:60:0,87,1152 +chrX 1931114 . CA C, 342.60 . AS_QUALapprox=|350|0;AS_VarDP=11|19|0;BaseQRankSum=0.391;DP=44;MQRankSum=0.000;QUALapprox=350;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=0.174;VarDP=30 GT:AD:DP:GQ:PL:SB 0/1:11,19,0:30:99:350,0,163,383,220,602:4,7,12,7 +chrX 1931116 . A . . END=1931193 GT:DP:GQ:MIN_DP:PL 0/0:52:83:52:0,83,1266 +chrX 1931194 . A C, 831.64 . AS_QUALapprox=|839|0;AS_VarDP=24|32|0;BaseQRankSum=-0.726;DP=56;MQRankSum=0.000;QUALapprox=839;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=0.953;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:24,32,0:56:99:839,0,645,911,740,1650:14,10,23,9 +chrX 1931195 . C . . END=1931574 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,113,1449 +chrX 1931575 . CT C, 287.60 . AS_QUALapprox=|295|0;AS_VarDP=20|16|0;BaseQRankSum=-0.709;DP=46;MQRankSum=0.000;QUALapprox=295;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=-0.530;VarDP=36 GT:AD:DP:GQ:PL:SB 0/1:20,16,0:36:99:295,0,413,355,461,816:10,10,10,6 +chrX 1931577 . T . . END=1931923 GT:DP:GQ:MIN_DP:PL 0/0:59:62:59:0,62,1245 +chrX 1931924 . T TTTA, 633.60 . AS_QUALapprox=|641|0;AS_VarDP=30|18|0;BaseQRankSum=1.039;DP=59;MQRankSum=0.818;QUALapprox=641;RAW_GT_COUNT=0,1,0;RAW_MQandDP=207896,59;ReadPosRankSum=1.140;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:30,18,0:48:99:641,0,1148,731,1202,1934:16,14,11,7 +chrX 1931925 . T . . END=1932288 GT:DP:GQ:MIN_DP:PL 0/0:59:82:59:0,82,1395 +chrX 1932289 . G A, 1164.64 . AS_QUALapprox=|1172|0;AS_VarDP=25|30|0;BaseQRankSum=2.416;DP=58;MQRankSum=0.000;QUALapprox=1172;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-0.626;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,30,0:55:99:0|1:1932289_G_A:1172,0,959,1248,1050,2297:1932289:16,9,13,17 +chrX 1932290 . G . . END=1932292 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 1932293 . A C, 1155.64 . AS_QUALapprox=|1163|0;AS_VarDP=25|30|0;BaseQRankSum=1.727;DP=56;MQRankSum=0.000;QUALapprox=1163;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-0.516;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,30,0:55:99:0|1:1932289_G_A:1163,0,959,1239,1050,2288:1932289:16,9,13,17 +chrX 1932294 . C . . END=1932354 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 1932355 . T C, 784.64 . AS_QUALapprox=|792|0;AS_VarDP=33|30|0;BaseQRankSum=0.681;DP=65;MQRankSum=0.000;QUALapprox=792;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=0.812;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:33,30,0:63:99:792,0,868,891,958,1849:16,17,17,13 +chrX 1932356 . T . . END=1932423 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 1932424 . G T, 625.64 . AS_QUALapprox=|633|0;AS_VarDP=33|25|0;BaseQRankSum=-2.393;DP=60;MQRankSum=0.000;QUALapprox=633;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=-1.304;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:33,25,0:58:99:633,0,962,733,1037,1770:17,16,13,12 +chrX 1932425 . A . . END=1933034 GT:DP:GQ:MIN_DP:PL 0/0:59:46:59:0,46,1170 +chrX 1933035 . C . . END=1933035 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,943 +chrX 1933036 . A . . END=1933666 GT:DP:GQ:MIN_DP:PL 0/0:49:27:41:0,27,1050 +chrX 1933667 . G . . END=1933667 GT:DP:GQ:MIN_DP:PL 0/0:39:4:39:0,4,1059 +chrX 1933668 . A . . END=1933676 GT:DP:GQ:MIN_DP:PL 0/0:36:22:32:0,22,884 +chrX 1933677 . G . . END=1933677 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,804 +chrX 1933678 . T . . END=1933678 GT:DP:GQ:MIN_DP:PL 0/0:34:67:34:0,67,971 +chrX 1933679 . C . . END=1933679 GT:DP:GQ:MIN_DP:PL 0/0:34:4:34:0,4,915 +chrX 1933680 . T . . END=1933688 GT:DP:GQ:MIN_DP:PL 0/0:39:24:36:0,24,962 +chrX 1933689 . T . . END=1933689 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,954 +chrX 1933690 . A . . END=1933690 GT:DP:GQ:MIN_DP:PL 0/0:48:80:48:0,80,1420 +chrX 1933691 . C . . END=1933691 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,1052 +chrX 1933692 . A . . END=1933850 GT:DP:GQ:MIN_DP:PL 0/0:38:32:25:0,32,651 +chrX 1933851 . G . . END=1933851 GT:DP:GQ:MIN_DP:PL 0/0:19:14:19:0,14,513 +chrX 1933852 . T . . END=1933852 GT:DP:GQ:MIN_DP:PL 0/0:20:48:20:0,48,720 +chrX 1933853 . C . . END=1933855 GT:DP:GQ:MIN_DP:PL 0/0:23:0:23:0,0,466 +chrX 1933856 . A . . END=1934547 GT:DP:GQ:MIN_DP:PL 0/0:46:46:42:0,46,943 +chrX 1934548 . T C, 563.64 . AS_QUALapprox=|571|0;AS_VarDP=36|23|0;BaseQRankSum=0.054;DP=63;MQRankSum=0.000;QUALapprox=571;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=0.972;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:36,23,0:59:99:571,0,994,680,1063,1743:14,22,16,7 +chrX 1934549 . G . . END=1934929 GT:DP:GQ:MIN_DP:PL 0/0:60:69:60:0,69,1299 +chrX 1934930 . A G, 427.64 . AS_QUALapprox=|435|0;AS_VarDP=19|18|0;BaseQRankSum=0.334;DP=40;MQRankSum=0.000;QUALapprox=435;RAW_GT_COUNT=0,1,0;RAW_MQandDP=144000,40;ReadPosRankSum=0.790;VarDP=37 GT:AD:DP:GQ:PL:SB 0/1:19,18,0:37:99:435,0,490,492,543,1035:12,7,8,10 +chrX 1934931 . G . . END=1935079 GT:DP:GQ:MIN_DP:PL 0/0:49:30:38:0,30,969 +chrX 1935080 . A AGGAG, 825.60 . AS_QUALapprox=|833|0;AS_VarDP=13|21|0;BaseQRankSum=-0.185;DP=36;MQRankSum=0.000;QUALapprox=833;RAW_GT_COUNT=0,1,0;RAW_MQandDP=129600,36;ReadPosRankSum=0.372;VarDP=34 GT:AD:DP:GQ:PL:SB 0/1:13,21,0:34:99:833,0,483,872,546,1418:11,2,20,1 +chrX 1935081 . G . . END=1935396 GT:DP:GQ:MIN_DP:PL 0/0:45:31:42:0,31,1128 +chrX 1935397 . G T, 682.64 . AS_QUALapprox=|690|0;AS_VarDP=33|28|0;BaseQRankSum=-0.867;DP=62;MQRankSum=0.000;QUALapprox=690;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=0.543;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:33,28,0:61:99:690,0,867,789,951,1740:15,18,12,16 +chrX 1935398 . G . . END=1936516 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,106,1404 +chrX 1936517 . G A, 611.64 . AS_QUALapprox=|619|0;AS_VarDP=27|23|0;BaseQRankSum=-0.637;DP=53;MQRankSum=0.963;QUALapprox=619;RAW_GT_COUNT=0,1,0;RAW_MQandDP=189601,53;ReadPosRankSum=1.451;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:27,23,0:50:99:619,0,768,700,837,1537:15,12,17,6 +chrX 1936518 . T . . END=1936552 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,101,1438 +chrX 1936553 . C CTT, 739.60 . AS_QUALapprox=|747|0;AS_VarDP=15|30|0;BaseQRankSum=0.423;DP=58;MQRankSum=0.573;QUALapprox=747;RAW_GT_COUNT=0,1,0;RAW_MQandDP=207137,58;ReadPosRankSum=0.602;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:15,30,0:45:99:747,0,329,790,419,1209:4,11,20,10 +chrX 1936554 . T . . END=1936571 GT:DP:GQ:MIN_DP:PL 0/0:59:22:55:0,22,1202 +chrX 1936572 . A . . END=1936572 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,1051 +chrX 1936573 . G . . END=1936888 GT:DP:GQ:MIN_DP:PL 0/0:67:43:67:0,43,1306 +chrX 1936889 . T C, 1146.64 . AS_QUALapprox=|1154|0;AS_VarDP=28|43|0;BaseQRankSum=0.305;DP=73;MQRankSum=0.000;QUALapprox=1154;RAW_GT_COUNT=0,1,0;RAW_MQandDP=262800,73;ReadPosRankSum=-0.800;VarDP=71 GT:AD:DP:GQ:PL:SB 0/1:28,43,0:71:99:1154,0,665,1238,794,2032:7,21,22,21 +chrX 1936890 . T . . END=1936994 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 1936995 . G A, 1052.64 . AS_QUALapprox=|1060|0;AS_VarDP=22|41|0;BaseQRankSum=-1.545;DP=64;MQRankSum=0.000;QUALapprox=1060;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=-0.317;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:22,41,0:63:99:1060,0,521,1126,644,1769:10,12,16,25 +chrX 1936996 . A . . END=1937297 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,109,1663 +chrX 1937298 . G T, 640.64 . AS_QUALapprox=|648|0;AS_VarDP=31|24|0;BaseQRankSum=-0.245;DP=59;MQRankSum=0.917;QUALapprox=648;RAW_GT_COUNT=0,1,0;RAW_MQandDP=209716,59;ReadPosRankSum=-0.119;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:31,24,0:55:99:648,0,892,741,964,1706:17,14,14,10 +chrX 1937299 . C . . END=1937452 GT:DP:GQ:MIN_DP:PL 0/0:54:63:54:0,63,1394 +chrX 1937453 . G A, 1040.64 . AS_QUALapprox=|1048|0;AS_VarDP=26|39|0;BaseQRankSum=-1.382;DP=65;MQRankSum=0.000;QUALapprox=1048;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=-0.107;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:26,39,0:65:99:1048,0,706,1126,823,1949:13,13,18,21 +chrX 1937454 . A . . END=1938119 GT:DP:GQ:MIN_DP:PL 0/0:57:84:57:0,84,1320 +chrX 1938120 . A T, 762.64 . AS_QUALapprox=|770|0;AS_VarDP=30|30|0;BaseQRankSum=-0.117;DP=60;MQRankSum=0.000;QUALapprox=770;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=0.303;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:30,30,0:60:99:770,0,802,861,891,1752:18,12,18,12 +chrX 1938121 . A . . END=1938232 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 1938233 . T C, 1017.64 . AS_QUALapprox=|1025|0;AS_VarDP=34|38|0;BaseQRankSum=-0.287;DP=74;MQRankSum=0.000;QUALapprox=1025;RAW_GT_COUNT=0,1,0;RAW_MQandDP=266400,74;ReadPosRankSum=-2.685;VarDP=72 GT:AD:DP:GQ:PL:SB 0/1:34,38,0:72:99:1025,0,890,1127,1004,2130:15,19,21,17 +chrX 1938234 . T . . END=1939669 GT:DP:GQ:MIN_DP:PL 0/0:56:95:56:0,95,1267 +chrX 1939670 . T C, 613.64 . AS_QUALapprox=|621|0;AS_VarDP=19|22|0;BaseQRankSum=-0.435;DP=44;MQRankSum=0.000;QUALapprox=621;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=1.898;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:19,22,0:41:99:621,0,527,679,593,1272:8,11,7,15 +chrX 1939671 . A . . END=1939690 GT:DP:GQ:MIN_DP:PL 0/0:39:83:39:0,83,1237 +chrX 1939691 . T C, 547.64 . AS_QUALapprox=|555|0;AS_VarDP=20|20|0;BaseQRankSum=-0.563;DP=40;MQRankSum=0.000;QUALapprox=555;RAW_GT_COUNT=0,1,0;RAW_MQandDP=144000,40;ReadPosRankSum=2.517;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:20,20,0:40:99:555,0,565,615,625,1240:9,11,7,13 +chrX 1939692 . T . . END=1939719 GT:DP:GQ:MIN_DP:PL 0/0:41:86:41:0,86,1321 +chrX 1939720 . A G, 761.64 . AS_QUALapprox=|769|0;AS_VarDP=18|26|0;BaseQRankSum=1.248;DP=47;MQRankSum=0.000;QUALapprox=769;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=-1.302;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:18,26,0:44:99:769,0,466,822,544,1366:11,7,14,12 +chrX 1939721 . A . . END=1940153 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,111,1800 +chrX 1940154 . T C, 649.64 . AS_QUALapprox=|657|0;AS_VarDP=39|25|0;BaseQRankSum=1.558;DP=64;MQRankSum=0.000;QUALapprox=657;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=0.881;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:39,25,0:64:99:657,0,1073,774,1148,1922:13,26,13,12 +chrX 1940155 . G . . END=1940282 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 1940283 . A G, 733.64 . AS_QUALapprox=|741|0;AS_VarDP=32|29|0;BaseQRankSum=0.172;DP=62;MQRankSum=0.000;QUALapprox=741;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=0.766;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:32,29,0:61:99:741,0,840,837,927,1763:16,16,17,12 +chrX 1940284 . A . . END=1940815 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,114,1763 +chrX 1940816 . C T, 905.64 . AS_QUALapprox=|913|0;AS_VarDP=34|37|0;BaseQRankSum=-1.610;DP=71;MQRankSum=0.000;QUALapprox=913;RAW_GT_COUNT=0,1,0;RAW_MQandDP=255600,71;ReadPosRankSum=-1.364;VarDP=71 GT:AD:DP:GQ:PL:SB 0/1:34,37,0:71:99:913,0,895,1015,1005,2020:20,14,21,16 +chrX 1940817 . T . . END=1940864 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,120,1800 +chrX 1940865 . T C, 836.64 . AS_QUALapprox=|844|0;AS_VarDP=29|32|0;BaseQRankSum=-0.492;DP=64;MQRankSum=0.000;QUALapprox=844;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=1.387;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:29,32,0:61:99:844,0,816,931,911,1842:16,13,16,16 +chrX 1940866 . C . . END=1941072 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,105,1523 +chrX 1941073 . A ATT, 575.60 . AS_QUALapprox=|583|0;AS_VarDP=19|21|0;BaseQRankSum=-1.106;DP=50;MQRankSum=1.101;QUALapprox=583;RAW_GT_COUNT=0,1,0;RAW_MQandDP=178704,50;ReadPosRankSum=0.650;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:19,21,0:40:99:583,0,557,640,620,1260:8,11,8,13 +chrX 1941074 . T . . END=1941291 GT:DP:GQ:MIN_DP:PL 0/0:62:93:62:0,93,1451 +chrX 1941292 . A G, 929.64 . AS_QUALapprox=|937|0;AS_VarDP=30|25|0;BaseQRankSum=-0.782;DP=56;MQRankSum=-1.911;QUALapprox=937;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198461,56;ReadPosRankSum=-1.370;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:30,25,0:55:99:0|1:1941292_A_G:937,0,1151,1028,1227,2254:1941292:9,21,14,11 +chrX 1941293 . C . . END=1941295 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 1941296 . A G, 929.64 . AS_QUALapprox=|937|0;AS_VarDP=30|25|0;BaseQRankSum=1.213;DP=56;MQRankSum=-1.911;QUALapprox=937;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198461,56;ReadPosRankSum=-1.565;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:30,25,0:55:99:0|1:1941292_A_G:937,0,1151,1028,1227,2254:1941292:9,21,14,11 +chrX 1941297 . C . . END=1941798 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,113,1383 +chrX 1941799 . G T, 847.64 . AS_QUALapprox=|855|0;AS_VarDP=26|30|0;BaseQRankSum=1.058;DP=56;MQRankSum=0.000;QUALapprox=855;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=0.855;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:26,30,0:56:99:855,0,695,933,785,1718:12,14,17,13 +chrX 1941800 . A . . END=1941903 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 1941904 . T C, 731.64 . AS_QUALapprox=|739|0;AS_VarDP=24|27|0;BaseQRankSum=1.519;DP=53;MQRankSum=0.000;QUALapprox=739;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=-1.416;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:24,27,0:51:99:739,0,611,811,692,1503:11,13,15,12 +chrX 1941905 . G . . END=1941964 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,120,1800 +chrX 1941965 . T C, 667.64 . AS_QUALapprox=|675|0;AS_VarDP=23|25|0;BaseQRankSum=-0.137;DP=49;MQRankSum=0.000;QUALapprox=675;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=0.021;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:23,25,0:48:99:675,0,600,743,676,1419:14,9,12,13 +chrX 1941966 . C . . END=1942008 GT:DP:GQ:MIN_DP:PL 0/0:56:90:56:0,90,1438 +chrX 1942009 . A G, 846.64 . AS_QUALapprox=|854|0;AS_VarDP=30|31|0;BaseQRankSum=-0.340;DP=61;MQRankSum=1.049;QUALapprox=854;RAW_GT_COUNT=0,1,0;RAW_MQandDP=218916,61;ReadPosRankSum=1.616;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:30,31,0:61:99:854,0,829,944,923,1867:15,15,15,16 +chrX 1942010 . C . . END=1942144 GT:DP:GQ:MIN_DP:PL 0/0:58:97:58:0,97,1707 +chrX 1942145 . C G, 796.64 . AS_QUALapprox=|804|0;AS_VarDP=26|21|0;BaseQRankSum=1.897;DP=50;MQRankSum=0.480;QUALapprox=804;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176643,50;ReadPosRankSum=0.706;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,21,0:47:99:0|1:1942145_C_G:804,0,893,882,957,1838:1942145:15,11,8,13 +chrX 1942146 . T . . END=1942151 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,111,1665 +chrX 1942152 . T G, 805.64 . AS_QUALapprox=|813|0;AS_VarDP=23|21|0;BaseQRankSum=1.213;DP=45;MQRankSum=-1.001;QUALapprox=813;RAW_GT_COUNT=0,1,0;RAW_MQandDP=161425,45;ReadPosRankSum=0.207;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,21,0:44:99:0|1:1942145_C_G:813,0,818,882,881,1763:1942145:14,9,8,13 +chrX 1942153 . G . . END=1942192 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,101,1248 +chrX 1942193 . T C, 729.64 . AS_QUALapprox=|737|0;AS_VarDP=27|27|0;BaseQRankSum=0.757;DP=55;MQRankSum=0.000;QUALapprox=737;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-0.061;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:27,27,0:54:99:737,0,701,817,783,1600:14,13,11,16 +chrX 1942194 . A . . END=1942271 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 1942272 . G A, 1007.64 . AS_QUALapprox=|1015|0;AS_VarDP=36|38|0;BaseQRankSum=0.786;DP=79;MQRankSum=0.000;QUALapprox=1015;RAW_GT_COUNT=0,1,0;RAW_MQandDP=284400,79;ReadPosRankSum=0.368;VarDP=74 GT:AD:DP:GQ:PL:SB 0/1:36,38,0:74:99:1015,0,911,1122,1024,2147:23,13,19,19 +chrX 1942273 . A . . END=1942471 GT:DP:GQ:MIN_DP:PL 0/0:66:50:66:0,50,1300 +chrX 1942472 . C . . END=1942472 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,1197 +chrX 1942473 . A . . END=1942478 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 1942479 . T . . END=1942480 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,1127 +chrX 1942481 . A . . END=1942481 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,120,1800 +chrX 1942482 . T . . END=1942483 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,1148 +chrX 1942484 . A . . END=1942484 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 1942485 . T . . END=1942486 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,1113 +chrX 1942487 . A . . END=1942488 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 1942489 . G . . END=1942489 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,948 +chrX 1942490 . A . . END=1942490 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 1942491 . G . . END=1942494 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,869 +chrX 1942495 . A . . END=1942498 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,114,1710 +chrX 1942499 . T . . END=1942499 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,834 +chrX 1942500 . A . . END=1942500 GT:DP:GQ:MIN_DP:PL 0/0:47:92:47:0,92,1485 +chrX 1942501 . T . . END=1942501 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,730 +chrX 1942502 . A . . END=1942502 GT:DP:GQ:MIN_DP:PL 0/0:47:96:47:0,96,1440 +chrX 1942503 . CAAAAAAAAAAAAAAAAA C, 332.60 . AS_QUALapprox=|340|0;AS_VarDP=17|11|0;BaseQRankSum=1.079;DP=40;MQRankSum=0.878;QUALapprox=340;RAW_GT_COUNT=0,1,0;RAW_MQandDP=142000,40;ReadPosRankSum=-1.285;VarDP=28 GT:AD:DP:GQ:PL:SB 0/1:17,11,0:28:99:340,0,624,389,658,1048:4,13,9,2 +chrX 1942521 . A . . END=1942536 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,115,1800 +chrX 1942537 . C . . END=1942537 GT:DP:GQ:MIN_DP:PL 0/0:67:0:67:0,0,1511 +chrX 1942538 . A . . END=1942538 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 1942539 . G . . END=1942541 GT:DP:GQ:MIN_DP:PL 0/0:64:0:64:0,0,1443 +chrX 1942542 . A . . END=1942544 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 1942545 . G . . END=1942545 GT:DP:GQ:MIN_DP:PL 0/0:66:9:66:0,9,1695 +chrX 1942546 . A . . END=1942547 GT:DP:GQ:MIN_DP:PL 0/0:67:41:67:0,41,1633 +chrX 1942548 . T . . END=1942548 GT:DP:GQ:MIN_DP:PL 0/0:63:0:63:0,0,1393 +chrX 1942549 . A . . END=1942553 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 1942554 . C . . END=1942554 GT:DP:GQ:MIN_DP:PL 0/0:65:0:65:0,0,1732 +chrX 1942555 . A . . END=1942824 GT:DP:GQ:MIN_DP:PL 0/0:73:46:73:0,46,1800 +chrX 1942825 . G C, 1413.64 . AS_QUALapprox=|1421|0;AS_VarDP=30|36|0;BaseQRankSum=-0.467;DP=67;MQRankSum=0.000;QUALapprox=1421;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=1.295;VarDP=66 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:30,36,0:66:99:0|1:1942825_G_C:1421,0,1141,1512,1249,2761:1942825:17,13,20,16 +chrX 1942826 . G . . END=1942828 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 1942829 . C G, 1413.64 . AS_QUALapprox=|1421|0;AS_VarDP=30|36|0;BaseQRankSum=1.365;DP=67;MQRankSum=0.000;QUALapprox=1421;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=1.320;VarDP=66 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:30,36,0:66:99:0|1:1942825_G_C:1421,0,1141,1512,1249,2761:1942825:17,13,20,16 +chrX 1942830 . G . . END=1943061 GT:DP:GQ:MIN_DP:PL 0/0:62:89:62:0,89,1357 +chrX 1943062 . G . . END=1943062 GT:DP:GQ:MIN_DP:PL 0/0:52:0:52:0,0,1262 +chrX 1943063 . A . . END=1944413 GT:DP:GQ:MIN_DP:PL 0/0:69:85:69:0,85,1398 +chrX 1944414 . A C, 569.64 . AS_QUALapprox=|577|0;AS_VarDP=28|16|0;BaseQRankSum=1.106;DP=45;MQRankSum=0.000;QUALapprox=577;RAW_GT_COUNT=0,1,0;RAW_MQandDP=159844,45;ReadPosRankSum=-0.549;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,16,0:44:99:0|1:1944414_A_C:577,0,1126,662,1174,1836:1944414:13,15,9,7 +chrX 1944415 . C . . END=1944418 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,120,1800 +chrX 1944419 . C A, 568.64 . AS_QUALapprox=|576|0;AS_VarDP=28|16|0;BaseQRankSum=1.987;DP=44;MQRankSum=0.000;QUALapprox=576;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=-1.099;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,16,0:44:99:0|1:1944414_A_C:576,0,1126,661,1174,1835:1944414:13,15,9,7 +chrX 1944420 . G . . END=1944578 GT:DP:GQ:MIN_DP:PL 0/0:50:70:50:0,70,1121 +chrX 1944579 . CA C, 227.60 . AS_QUALapprox=|235|0;AS_VarDP=16|14|0;BaseQRankSum=0.725;DP=40;MQRankSum=-1.002;QUALapprox=235;RAW_GT_COUNT=0,1,0;RAW_MQandDP=142000,40;ReadPosRankSum=0.180;VarDP=30 GT:AD:DP:GQ:PL:SB 0/1:16,14,0:30:99:235,0,295,283,335,618:8,8,10,4 +chrX 1944581 . A . . END=1944806 GT:DP:GQ:MIN_DP:PL 0/0:63:68:63:0,68,1042 +chrX 1944807 . C A, 746.64 . AS_QUALapprox=|754|0;AS_VarDP=27|28|0;BaseQRankSum=0.803;DP=56;MQRankSum=0.000;QUALapprox=754;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-0.876;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:27,28,0:55:99:754,0,684,834,768,1602:14,13,19,9 +chrX 1944808 . G . . END=1944862 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 1944863 . C T, 756.64 . AS_QUALapprox=|764|0;AS_VarDP=35|30|0;BaseQRankSum=1.207;DP=66;MQRankSum=0.000;QUALapprox=764;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=1.738;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:35,30,0:65:99:764,0,862,868,952,1819:18,17,18,12 +chrX 1944864 . G . . END=1944948 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 1944949 . G A, 782.64 . AS_QUALapprox=|790|0;AS_VarDP=36|31|0;BaseQRankSum=-0.576;DP=67;MQRankSum=-1.048;QUALapprox=790;RAW_GT_COUNT=0,1,0;RAW_MQandDP=239904,67;ReadPosRankSum=-0.497;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:36,31,0:67:99:790,0,976,897,1068,1966:17,19,15,16 +chrX 1944950 . A . . END=1945232 GT:DP:GQ:MIN_DP:PL 0/0:48:34:46:0,34,1195 +chrX 1945233 . T . . END=1945233 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,1211 +chrX 1945234 . T . . END=1945263 GT:DP:GQ:MIN_DP:PL 0/0:47:95:47:0,95,1301 +chrX 1945264 . A . . END=1945264 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,1094 +chrX 1945265 . C . . END=1945406 GT:DP:GQ:MIN_DP:PL 0/0:48:21:47:0,21,1271 +chrX 1945407 . T . . END=1945407 GT:DP:GQ:MIN_DP:PL 0/0:56:0:56:0,0,1419 +chrX 1945408 . A . . END=1945482 GT:DP:GQ:MIN_DP:PL 0/0:63:64:63:0,64,1473 +chrX 1945483 . CA C, 224.60 . AS_QUALapprox=|232|0;AS_VarDP=30|15|0;BaseQRankSum=2.480;DP=54;MQRankSum=0.000;QUALapprox=232;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=-0.625;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:30,15,0:45:99:232,0,653,322,698,1020:18,12,11,4 +chrX 1945485 . A . . END=1945796 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,110,1735 +chrX 1945797 . T C, 790.64 . AS_QUALapprox=|798|0;AS_VarDP=35|33|0;BaseQRankSum=-2.549;DP=71;MQRankSum=-1.000;QUALapprox=798;RAW_GT_COUNT=0,1,0;RAW_MQandDP=255481,71;ReadPosRankSum=-0.344;VarDP=68 GT:AD:DP:GQ:PL:SB 0/1:35,33,0:68:99:798,0,958,903,1057,1959:13,22,17,16 +chrX 1945798 . A . . END=1946212 GT:DP:GQ:MIN_DP:PL 0/0:64:91:64:0,91,1539 +chrX 1946213 . G A, 680.64 . AS_QUALapprox=|688|0;AS_VarDP=31|26|0;BaseQRankSum=0.734;DP=58;MQRankSum=0.000;QUALapprox=688;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=0.633;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:31,26,0:57:99:688,0,847,781,924,1705:15,16,14,12 +chrX 1946214 . C . . END=1946465 GT:DP:GQ:MIN_DP:PL 0/0:63:79:63:0,79,1319 +chrX 1946466 . TATAAA T, 736.60 . AS_QUALapprox=|744|0;AS_VarDP=18|19|0;BaseQRankSum=-1.357;DP=40;MQRankSum=0.000;QUALapprox=744;RAW_GT_COUNT=0,1,0;RAW_MQandDP=144000,40;ReadPosRankSum=-0.958;VarDP=37 GT:AD:DP:GQ:PL:SB 0/1:18,19,0:37:99:744,0,698,798,756,1554:9,9,11,8 +chrX 1946472 . A . . END=1946548 GT:DP:GQ:MIN_DP:PL 0/0:37:53:37:0,53,983 +chrX 1946549 . G A, 757.64 . AS_QUALapprox=|765|0;AS_VarDP=18|21|0;BaseQRankSum=1.795;DP=39;MQRankSum=0.000;QUALapprox=765;RAW_GT_COUNT=0,1,0;RAW_MQandDP=140400,39;ReadPosRankSum=0.676;VarDP=39 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:18,21,0:39:99:0|1:1946549_G_A:765,0,592,818,655,1473:1946549:9,9,9,12 +chrX 1946550 . C . . END=1946588 GT:DP:GQ:MIN_DP:PL 0/0:41:81:41:0,81,1005 +chrX 1946589 . A T, 808.64 . AS_QUALapprox=|816|0;AS_VarDP=22|21|0;BaseQRankSum=0.310;DP=43;MQRankSum=-0.977;QUALapprox=816;RAW_GT_COUNT=0,1,0;RAW_MQandDP=152800,43;ReadPosRankSum=0.024;VarDP=43 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,21,0:43:99:0|1:1946549_G_A:816,0,861,882,924,1806:1946549:10,12,7,14 +chrX 1946590 . T A, 808.64 . AS_QUALapprox=|816|0;AS_VarDP=22|21|0;BaseQRankSum=0.019;DP=43;MQRankSum=-0.977;QUALapprox=816;RAW_GT_COUNT=0,1,0;RAW_MQandDP=152800,43;ReadPosRankSum=-0.078;VarDP=43 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,21,0:43:99:0|1:1946549_G_A:816,0,861,882,924,1806:1946549:10,12,7,14 +chrX 1946591 . T . . END=1946626 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,114,1710 +chrX 1946627 . C T, 741.64 . AS_QUALapprox=|749|0;AS_VarDP=26|22|0;BaseQRankSum=0.288;DP=48;MQRankSum=0.000;QUALapprox=749;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=-1.273;VarDP=48 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,22,0:48:99:0|1:1946549_G_A:749,0,911,827,977,1804:1946549:14,12,7,15 +chrX 1946628 . A . . END=1946858 GT:DP:GQ:MIN_DP:PL 0/0:46:21:42:0,21,961 +chrX 1946859 . A AATATATTT, 732.60 . AS_QUALapprox=|740|0;AS_VarDP=19|19|0;BaseQRankSum=-0.757;DP=43;MQRankSum=0.000;QUALapprox=740;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154800,43;ReadPosRankSum=-0.263;VarDP=38 GT:AD:DP:GQ:PL:SB 0/1:19,19,0:38:99:740,0,721,798,778,1576:8,11,10,9 +chrX 1946860 . A . . END=1947450 GT:DP:GQ:MIN_DP:PL 0/0:25:25:20:0,25,450 +chrX 1947451 . A . . END=1947451 GT:DP:GQ:MIN_DP:PL 0/0:24:2:24:0,2,654 +chrX 1947452 . T . . END=1947454 GT:DP:GQ:MIN_DP:PL 0/0:18:27:16:0,27,405 +chrX 1947455 . A G, 350.64 . AS_QUALapprox=|358|0;AS_VarDP=7|10|0;BaseQRankSum=-1.135;DP=17;MQRankSum=-0.121;QUALapprox=358;RAW_GT_COUNT=0,1,0;RAW_MQandDP=53118,17;ReadPosRankSum=-1.469;VarDP=17 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:7,10,0:17:99:1|0:1947453_G_T:358,0,234,379,264,642:1947453:5,2,5,5 +chrX 1947456 . T . . END=1947456 GT:DP:GQ:MIN_DP:PL 0/0:16:27:16:0,27,405 +chrX 1947457 . A G, 347.64 . AS_QUALapprox=|355|0;AS_VarDP=8|10|0;BaseQRankSum=0.507;DP=18;MQRankSum=0.212;QUALapprox=355;RAW_GT_COUNT=0,1,0;RAW_MQandDP=55422,18;ReadPosRankSum=-1.308;VarDP=18 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:8,10,0:18:99:1|0:1947453_G_T:355,0,256,379,286,664:1947453:5,3,5,5 +chrX 1947458 . T . . END=1947473 GT:DP:GQ:MIN_DP:PL 0/0:16:30:16:0,30,450 +chrX 1947474 . CATATATATATAT C,TATATATATATAT, 384.06 . AS_QUALapprox=|230|209|0;AS_VarDP=0|7|5|0;DP=16;QUALapprox=401;RAW_GT_COUNT=0,0,1;RAW_MQandDP=42222,16;VarDP=12 GT:AD:DP:GQ:PL:SB 1/2:0,7,5,0:12:99:401,171,177,192,0,341,398,198,283,484:0,0,5,7 +chrX 1947487 . A . . END=1947498 GT:DP:GQ:MIN_DP:PL 0/0:20:27:20:0,27,405 +chrX 1947499 . A . . END=1947500 GT:DP:GQ:MIN_DP:PL 0/0:20:0:20:0,0,432 +chrX 1947501 . A . . END=1947501 GT:DP:GQ:MIN_DP:PL 0/0:20:35:20:0,35,606 +chrX 1947502 . T . . END=1947502 GT:DP:GQ:MIN_DP:PL 0/0:21:0:21:0,0,411 +chrX 1947503 . A . . END=1947503 GT:DP:GQ:MIN_DP:PL 0/0:20:36:20:0,36,540 +chrX 1947504 . T . . END=1947504 GT:DP:GQ:MIN_DP:PL 0/0:18:0:18:0,0,447 +chrX 1947505 . A . . END=1947507 GT:DP:GQ:MIN_DP:PL 0/0:18:33:18:0,33,495 +chrX 1947508 . T . . END=1947511 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,362 +chrX 1947512 . C . . END=1947692 GT:DP:GQ:MIN_DP:PL 0/0:13:20:10:0,20,293 +chrX 1947693 . A . . END=1947693 GT:DP:GQ:MIN_DP:PL 0/0:9:12:9:0,12,233 +chrX 1947694 . A . . END=1947709 GT:DP:GQ:MIN_DP:PL 0/0:9:24:9:0,24,248 +chrX 1947710 . A . . END=1947710 GT:DP:GQ:MIN_DP:PL 0/0:9:2:9:0,2,193 +chrX 1947711 . C . . END=1947740 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,233 +chrX 1947741 . T . . END=1947741 GT:DP:GQ:MIN_DP:PL 0/0:8:9:8:0,9,209 +chrX 1947742 . C . . END=1947744 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,315 +chrX 1947745 . A . . END=1947745 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,149 +chrX 1947746 . C . . END=1947759 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,203 +chrX 1947760 . G . . END=1947760 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,209 +chrX 1947761 . T . . END=1947772 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,223 +chrX 1947773 . T . . END=1948202 GT:DP:GQ:MIN_DP:PL 0/0:4:0:4:0,0,29 +chrX 1948203 . G . . END=1948203 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,203 +chrX 1948204 . A . . END=1948204 GT:DP:GQ:MIN_DP:PL 0/0:5:15:5:0,15,144 +chrX 1948205 . G . . END=1948206 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,213 +chrX 1948207 . A . . END=1948207 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,189 +chrX 1948208 . G . . END=1948220 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,213 +chrX 1948221 . T . . END=1948221 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,178 +chrX 1948222 . G . . END=1948241 GT:DP:GQ:MIN_DP:PL 0/0:10:27:9:0,27,283 +chrX 1948242 . A . . END=1948242 GT:DP:GQ:MIN_DP:PL 0/0:10:15:10:0,15,258 +chrX 1948243 . G . . END=1948264 GT:DP:GQ:MIN_DP:PL 0/0:12:21:10:0,21,317 +chrX 1948265 . A . . END=1948265 GT:DP:GQ:MIN_DP:PL 0/0:12:1:12:0,1,338 +chrX 1948266 . G . . END=1948275 GT:DP:GQ:MIN_DP:PL 0/0:12:24:12:0,24,360 +chrX 1948276 . A . . END=1948276 GT:DP:GQ:MIN_DP:PL 0/0:11:19:11:0,19,313 +chrX 1948277 . G . . END=1948286 GT:DP:GQ:MIN_DP:PL 0/0:9:24:9:0,24,268 +chrX 1948287 . A . . END=1948287 GT:DP:GQ:MIN_DP:PL 0/0:9:13:9:0,13,264 +chrX 1948288 . G . . END=1948290 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,268 +chrX 1948291 . A . . END=1948291 GT:DP:GQ:MIN_DP:PL 0/0:9:13:9:0,13,264 +chrX 1948292 . G . . END=1948297 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,315 +chrX 1948298 . G . . END=1948328 GT:DP:GQ:MIN_DP:PL 0/0:7:0:7:0,0,174 +chrX 1948329 . G . . END=1948330 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,243 +chrX 1948331 . G . . END=1948333 GT:DP:GQ:MIN_DP:PL 0/0:7:18:7:0,18,209 +chrX 1948334 . G . . END=1948338 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,233 +chrX 1948339 . G . . END=1948339 GT:DP:GQ:MIN_DP:PL 0/0:8:10:8:0,10,219 +chrX 1948340 . A . . END=1948347 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,223 +chrX 1948348 . A . . END=1948348 GT:DP:GQ:MIN_DP:PL 0/0:6:0:6:0,0,139 +chrX 1948349 . G . . END=1948355 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,228 +chrX 1948356 . A . . END=1948356 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,188 +chrX 1948357 . G . . END=1948358 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,233 +chrX 1948359 . G . . END=1948380 GT:DP:GQ:MIN_DP:PL 0/0:7:0:7:0,0,135 +chrX 1948381 . A . . END=1948384 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,243 +chrX 1948385 . A . . END=1948385 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,199 +chrX 1948386 . G . . END=1948386 GT:DP:GQ:MIN_DP:PL 0/0:8:24:8:0,24,268 +chrX 1948387 . A . . END=1948387 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,209 +chrX 1948388 . G . . END=1948402 GT:DP:GQ:MIN_DP:PL 0/0:9:24:9:0,24,258 +chrX 1948403 . G . . END=1948403 GT:DP:GQ:MIN_DP:PL 0/0:9:2:9:0,2,233 +chrX 1948404 . G . . END=1948415 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,213 +chrX 1948416 . G . . END=1948416 GT:DP:GQ:MIN_DP:PL 0/0:10:0:10:0,0,268 +chrX 1948417 . A . . END=1948422 GT:DP:GQ:MIN_DP:PL 0/0:10:30:10:0,30,327 +chrX 1948423 . C . . END=1948423 GT:DP:GQ:MIN_DP:PL 0/0:9:2:9:0,2,243 +chrX 1948424 . A . . END=1948451 GT:DP:GQ:MIN_DP:PL 0/0:14:33:12:0,33,362 +chrX 1948452 . A . . END=1948452 GT:DP:GQ:MIN_DP:PL 0/0:14:13:14:0,13,379 +chrX 1948453 . G . . END=1948500 GT:DP:GQ:MIN_DP:PL 0/0:15:20:14:0,20,432 +chrX 1948501 . T . . END=1948501 GT:DP:GQ:MIN_DP:PL 0/0:19:17:19:0,17,430 +chrX 1948502 . A . . END=1948537 GT:DP:GQ:MIN_DP:PL 0/0:23:30:22:0,30,651 +chrX 1948538 . T . . END=1948538 GT:DP:GQ:MIN_DP:PL 0/0:22:17:22:0,17,606 +chrX 1948539 . G . . END=1949001 GT:DP:GQ:MIN_DP:PL 0/0:17:20:15:0,20,462 +chrX 1949002 . A . . END=1949002 GT:DP:GQ:MIN_DP:PL 0/0:16:13:16:0,13,487 +chrX 1949003 . A . . END=1949119 GT:DP:GQ:MIN_DP:PL 0/0:14:27:10:0,27,372 +chrX 1949120 . T . . END=1949120 GT:DP:GQ:MIN_DP:PL 0/0:12:11:12:0,11,337 +chrX 1949121 . C . . END=1949146 GT:DP:GQ:MIN_DP:PL 0/0:11:21:9:0,21,233 +chrX 1949147 . G . . END=2134515 GT:DP:GQ:MIN_DP:PL 0/0:0:0:0:0,0,0 +chrX 2134516 . T . . END=2134516 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,213 +chrX 2134517 . G . . END=2134517 GT:DP:GQ:MIN_DP:PL 0/0:8:10:8:0,10,219 +chrX 2134518 . G . . END=2134542 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,223 +chrX 2134543 . T . . END=2134559 GT:DP:GQ:MIN_DP:PL 0/0:7:12:7:0,12,139 +chrX 2134560 . A . . END=2134566 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,213 +chrX 2134567 . T . . END=2134567 GT:DP:GQ:MIN_DP:PL 0/0:8:10:8:0,10,229 +chrX 2134568 . C . . END=2134657 GT:DP:GQ:MIN_DP:PL 0/0:14:24:8:0,24,268 +chrX 2134658 . T . . END=2134658 GT:DP:GQ:MIN_DP:PL 0/0:15:10:15:0,10,442 +chrX 2134659 . T . . END=2134854 GT:DP:GQ:MIN_DP:PL 0/0:17:26:15:0,26,472 +chrX 2134855 . C . . END=2134855 GT:DP:GQ:MIN_DP:PL 0/0:43:16:43:0,16,1097 +chrX 2134856 . A . . END=2134866 GT:DP:GQ:MIN_DP:PL 0/0:47:42:47:0,42,1166 +chrX 2134867 . T . . END=2134867 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,1006 +chrX 2134868 . C . . END=2134874 GT:DP:GQ:MIN_DP:PL 0/0:48:58:48:0,58,1181 +chrX 2134875 . C . . END=2134875 GT:DP:GQ:MIN_DP:PL 0/0:47:8:47:0,8,1196 +chrX 2134876 . A . . END=2137010 GT:DP:GQ:MIN_DP:PL 0/0:53:65:53:0,65,1185 +chrX 2137011 . CCAT C, 298.60 . AS_QUALapprox=|306|0;AS_VarDP=24|9|0;BaseQRankSum=1.319;DP=40;MQRankSum=0.000;QUALapprox=306;RAW_GT_COUNT=0,1,0;RAW_MQandDP=144000,40;ReadPosRankSum=0.385;VarDP=33 GT:AD:DP:GQ:PL:SB 0/1:24,9,0:33:99:306,0,977,378,1004,1383:8,16,5,4 +chrX 2137015 . C . . END=2137053 GT:DP:GQ:MIN_DP:PL 0/0:36:84:36:0,84,1056 +chrX 2137054 . T C, 359.64 . AS_QUALapprox=|367|0;AS_VarDP=22|13|0;BaseQRankSum=1.406;DP=41;MQRankSum=0.000;QUALapprox=367;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147600,41;ReadPosRankSum=-1.692;VarDP=35 GT:AD:DP:GQ:PL:SB 0/1:22,13,0:35:99:367,0,590,432,630,1062:8,14,10,3 +chrX 2137055 . A . . END=2137120 GT:DP:GQ:MIN_DP:PL 0/0:38:51:33:0,51,818 +chrX 2137121 . T TCCC,TCTCCCATCATCATCACGATCACCATCTTTATTACCTCCC,TCCCCCATCATCATCATCACCATCACCATCTTCATTACCTCTCCCATCATCATCACGATCACCATCTTTATTACCTCCC, 1064.60 . AS_QUALapprox=|1072|576|949|0;AS_VarDP=14|3|0|0|0;BaseQRankSum=-1.098;DP=46;MQRankSum=-2.006;QUALapprox=1072;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147137,46;ReadPosRankSum=0.000;VarDP=17 GT:AD:DP:GQ:PL:SB 0/1:14,3,0,0,0:17:99:1072,0,469,496,532,1012,123,491,632,597,520,535,981,647,997:8,6,1,2 +chrX 2137122 . C . . END=2137156 GT:DP:GQ:MIN_DP:PL 0/0:35:63:35:0,63,945 +chrX 2137157 . T . . END=2137157 GT:DP:GQ:MIN_DP:PL 0/0:22:2:22:0,2,537 +chrX 2137158 . C . . END=2137194 GT:DP:GQ:MIN_DP:PL 0/0:24:45:22:0,45,917 +chrX 2137195 . T . . END=2137195 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,505 +chrX 2137196 . C . . END=2137213 GT:DP:GQ:MIN_DP:PL 0/0:45:31:44:0,31,1215 +chrX 2137214 . A . . END=2137215 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,857 +chrX 2137216 . C . . END=2137216 GT:DP:GQ:MIN_DP:PL 0/0:47:37:47:0,37,1264 +chrX 2137217 . C . . END=2137219 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,857 +chrX 2137220 . A . . END=2137220 GT:DP:GQ:MIN_DP:PL 0/0:46:33:46:0,33,1209 +chrX 2137221 . C . . END=2137221 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,1021 +chrX 2137222 . C . . END=2137222 GT:DP:GQ:MIN_DP:PL 0/0:45:31:45:0,31,1256 +chrX 2137223 . A . . END=2137227 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,502 +chrX 2137228 . C . . END=2137231 GT:DP:GQ:MIN_DP:PL 0/0:49:34:46:0,34,1280 +chrX 2137232 . A . . END=2137233 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,918 +chrX 2137234 . C . . END=2137272 GT:DP:GQ:MIN_DP:PL 0/0:49:82:49:0,82,1085 +chrX 2137273 . G C, 527.64 . AS_QUALapprox=|535|0;AS_VarDP=6|22|0;BaseQRankSum=-0.247;DP=30;MQRankSum=-1.309;QUALapprox=535;RAW_GT_COUNT=0,1,0;RAW_MQandDP=86853,30;ReadPosRankSum=0.504;VarDP=28 GT:AD:DP:GQ:PL:SB 0/1:6,22,0:28:75:535,0,75,552,141,693:4,2,12,10 +chrX 2137274 . A . . END=2137287 GT:DP:GQ:MIN_DP:PL 0/0:35:57:35:0,57,843 +chrX 2137288 . A . . END=2137288 GT:DP:GQ:MIN_DP:PL 0/0:22:0:22:0,0,98 +chrX 2137289 . A . . END=2137303 GT:DP:GQ:MIN_DP:PL 0/0:30:29:29:0,29,671 +chrX 2137304 . A . . END=2137313 GT:DP:GQ:MIN_DP:PL 0/0:26:0:26:0,0,201 +chrX 2137314 . T . . END=2137315 GT:DP:GQ:MIN_DP:PL 0/0:25:57:25:0,57,855 +chrX 2137316 . A . . END=2137316 GT:DP:GQ:MIN_DP:PL 0/0:23:0:23:0,0,461 +chrX 2137317 . C . . END=2137324 GT:DP:GQ:MIN_DP:PL 0/0:21:22:19:0,22,459 +chrX 2137325 . A . . END=2137325 GT:DP:GQ:MIN_DP:PL 0/0:20:11:20:0,11,516 +chrX 2137326 . T . . END=2137326 GT:DP:GQ:MIN_DP:PL 0/0:19:48:19:0,48,720 +chrX 2137327 . A . . END=2137327 GT:DP:GQ:MIN_DP:PL 0/0:17:0:17:0,0,272 +chrX 2137328 . A . . END=2137330 GT:DP:GQ:MIN_DP:PL 0/0:17:48:17:0,48,526 +chrX 2137331 . T . . END=2137331 GT:DP:GQ:MIN_DP:PL 0/0:16:9:16:0,9,418 +chrX 2137332 . C . . END=2137332 GT:DP:GQ:MIN_DP:PL 0/0:17:42:17:0,42,630 +chrX 2137333 . T . . END=2137333 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,228 +chrX 2137334 . C . . END=2137349 GT:DP:GQ:MIN_DP:PL 0/0:16:30:15:0,30,450 +chrX 2137350 . C . . END=2137351 GT:DP:GQ:MIN_DP:PL 0/0:12:0:12:0,0,99 +chrX 2137352 . A . . END=2137364 GT:DP:GQ:MIN_DP:PL 0/0:11:21:11:0,21,315 +chrX 2137365 . T . . END=2137510 GT:DP:GQ:MIN_DP:PL 0/0:0:0:0:0,0,0 +chrX 2137511 . A . . END=2137519 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,243 +chrX 2137520 . A . . END=2137520 GT:DP:GQ:MIN_DP:PL 0/0:9:13:9:0,13,264 +chrX 2137521 . T . . END=2137521 GT:DP:GQ:MIN_DP:PL 0/0:10:30:10:0,30,348 +chrX 2137522 . A . . END=2137523 GT:DP:GQ:MIN_DP:PL 0/0:12:0:12:0,0,264 +chrX 2137524 . C . . END=2137527 GT:DP:GQ:MIN_DP:PL 0/0:12:36:12:0,36,367 +chrX 2137528 . T . . END=2137528 GT:DP:GQ:MIN_DP:PL 0/0:12:1:12:0,1,317 +chrX 2137529 . C . . END=2137545 GT:DP:GQ:MIN_DP:PL 0/0:17:37:13:0,37,432 +chrX 2137546 . G . . END=2137546 GT:DP:GQ:MIN_DP:PL 0/0:17:2:17:0,2,432 +chrX 2137547 . A . . END=2137566 GT:DP:GQ:MIN_DP:PL 0/0:24:22:21:0,22,591 +chrX 2137567 . T . . END=2137567 GT:DP:GQ:MIN_DP:PL 0/0:23:0:23:0,0,513 +chrX 2137568 . C . . END=2137583 GT:DP:GQ:MIN_DP:PL 0/0:26:46:26:0,46,790 +chrX 2137584 . T . . END=2137585 GT:DP:GQ:MIN_DP:PL 0/0:27:0:27:0,0,99 +chrX 2137586 . A . . END=2137620 GT:DP:GQ:MIN_DP:PL 0/0:31:52:31:0,52,868 +chrX 2137621 . G . . END=2137621 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,759 +chrX 2137622 . A . . END=2137762 GT:DP:GQ:MIN_DP:PL 0/0:40:47:40:0,47,1045 +chrX 2137763 . C . . END=2137763 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,1142 +chrX 2137764 . A . . END=2137765 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,118,1440 +chrX 2137766 . T TATC, 835.60 . AS_QUALapprox=|843|0;AS_VarDP=20|22|0;BaseQRankSum=0.981;DP=43;MQRankSum=0.000;QUALapprox=843;RAW_GT_COUNT=0,1,0;RAW_MQandDP=152041,43;ReadPosRankSum=-2.004;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:20,22,0:42:99:843,0,752,903,818,1721:8,12,11,11 +chrX 2137767 . A . . END=2138062 GT:DP:GQ:MIN_DP:PL 0/0:40:31:40:0,31,949 +chrX 2138063 . AT A, 652.60 . AS_QUALapprox=|660|0;AS_VarDP=17|21|0;BaseQRankSum=-0.673;DP=41;MQRankSum=0.000;QUALapprox=660;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147600,41;ReadPosRankSum=1.278;VarDP=38 GT:AD:DP:GQ:PL:SB 0/1:17,21,0:38:99:660,0,512,711,575,1286:8,9,10,11 +chrX 2138065 . T . . END=2138109 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,102,1366 +chrX 2138110 . T C, 903.64 . AS_QUALapprox=|911|0;AS_VarDP=16|33|0;BaseQRankSum=0.541;DP=50;MQRankSum=0.000;QUALapprox=911;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=-0.981;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:16,33,0:49:99:911,0,329,958,428,1386:8,8,18,15 +chrX 2138111 . G . . END=2138308 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,104,1601 +chrX 2138309 . A T, 816.64 . AS_QUALapprox=|824|0;AS_VarDP=28|30|0;BaseQRankSum=0.807;DP=60;MQRankSum=0.000;QUALapprox=824;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=1.401;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:28,30,0:58:99:824,0,747,908,837,1744:17,11,13,17 +chrX 2138310 . G . . END=2138509 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 2138510 . C T, 790.64 . AS_QUALapprox=|798|0;AS_VarDP=27|31|0;BaseQRankSum=-0.635;DP=59;MQRankSum=0.000;QUALapprox=798;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=1.240;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:27,31,0:58:99:798,0,703,879,795,1675:14,13,15,16 +chrX 2138511 . T . . END=2138595 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,104,1554 +chrX 2138596 . T G, 674.64 . AS_QUALapprox=|682|0;AS_VarDP=20|24|0;BaseQRankSum=-1.274;DP=46;MQRankSum=0.000;QUALapprox=682;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=-0.165;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:20,24,0:44:99:682,0,563,742,635,1377:11,9,9,15 +chrX 2138597 . G . . END=2138650 GT:DP:GQ:MIN_DP:PL 0/0:40:80:40:0,80,1038 +chrX 2138651 . C A, 494.64 . AS_QUALapprox=|502|0;AS_VarDP=15|18|0;BaseQRankSum=2.258;DP=35;MQRankSum=0.000;QUALapprox=502;RAW_GT_COUNT=0,1,0;RAW_MQandDP=126000,35;ReadPosRankSum=-0.036;VarDP=33 GT:AD:DP:GQ:PL:SB 0/1:15,18,0:33:99:502,0,348,547,401,948:8,7,9,9 +chrX 2138652 . T . . END=2138697 GT:DP:GQ:MIN_DP:PL 0/0:27:33:22:0,33,495 +chrX 2138698 . GC G, 109.60 . AS_QUALapprox=|117|0;AS_VarDP=11|6|0;BaseQRankSum=2.105;DP=19;MQRankSum=0.000;QUALapprox=117;RAW_GT_COUNT=0,1,0;RAW_MQandDP=68400,19;ReadPosRankSum=0.708;VarDP=17 GT:AD:DP:GQ:PL:SB 0/1:11,6,0:17:84:117,0,84,146,102,248:3,8,0,6 +chrX 2138700 . C . . END=2138709 GT:DP:GQ:MIN_DP:PL 0/0:28:52:28:0,52,724 +chrX 2138710 . G . . END=2138710 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,591 +chrX 2138711 . C . . END=2138715 GT:DP:GQ:MIN_DP:PL 0/0:35:80:35:0,80,1036 +chrX 2138716 . A . . END=2138716 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,824 +chrX 2138717 . C . . END=2138717 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1485 +chrX 2138718 . T . . END=2138720 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,943 +chrX 2138721 . A . . END=2139236 GT:DP:GQ:MIN_DP:PL 0/0:43:73:43:0,73,1047 +chrX 2139237 . T G, 994.64 . AS_QUALapprox=|1002|0;AS_VarDP=22|36|0;BaseQRankSum=-0.332;DP=58;MQRankSum=0.000;QUALapprox=1002;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-1.371;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:22,36,0:58:99:1002,0,561,1068,669,1736:6,16,17,19 +chrX 2139238 . C . . END=2139337 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 2139338 . G A, 779.64 . AS_QUALapprox=|787|0;AS_VarDP=22|28|0;BaseQRankSum=0.229;DP=53;MQRankSum=0.000;QUALapprox=787;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=-0.919;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:22,28,0:50:99:787,0,594,853,678,1531:9,13,11,17 +chrX 2139339 . T . . END=2139428 GT:DP:GQ:MIN_DP:PL 0/0:51:87:51:0,87,1420 +chrX 2139429 . GCCAT G, 1312.60 . AS_QUALapprox=|1320|0;AS_VarDP=18|33|0;BaseQRankSum=1.824;DP=58;MQRankSum=0.000;QUALapprox=1320;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-0.864;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:18,33,0:51:99:1320,0,635,1375,735,2110:12,6,17,16 +chrX 2139434 . C . . END=2139562 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 2139563 . T . . END=2139577 GT:DP:GQ:MIN_DP:PL 0/0:59:0:59:0,0,953 +chrX 2139578 . G . . END=2139578 GT:DP:GQ:MIN_DP:PL 0/0:53:64:53:0,64,975 +chrX 2139579 . G . . END=2139599 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,677 +chrX 2139600 . T C, 536.64 . AS_QUALapprox=|544|0;AS_VarDP=14|20|0;BaseQRankSum=0.344;DP=46;MQRankSum=0.000;QUALapprox=544;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=0.648;VarDP=34 GT:AD:DP:GQ:PL:SB 0/1:14,20,0:34:99:544,0,335,629,427,1250:6,8,11,9 +chrX 2139601 . T . . END=2139637 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,491 +chrX 2139638 . A . . END=2139698 GT:DP:GQ:MIN_DP:PL 0/0:44:68:44:0,68,1196 +chrX 2139699 . T . . END=2139699 GT:DP:GQ:MIN_DP:PL 0/0:34:5:34:0,5,739 +chrX 2139700 . C . . END=2139716 GT:DP:GQ:MIN_DP:PL 0/0:28:42:28:0,42,630 +chrX 2139717 . A . . END=2139717 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,483 +chrX 2139718 . C . . END=2139720 GT:DP:GQ:MIN_DP:PL 0/0:40:75:40:0,75,1125 +chrX 2139721 . A . . END=2139721 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,680 +chrX 2139722 . C . . END=2139724 GT:DP:GQ:MIN_DP:PL 0/0:38:78:38:0,78,1170 +chrX 2139725 . A . . END=2139726 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,617 +chrX 2139727 . C . . END=2139732 GT:DP:GQ:MIN_DP:PL 0/0:37:44:37:0,44,899 +chrX 2139733 . A . . END=2139733 GT:DP:GQ:MIN_DP:PL 0/0:32:12:32:0,12,833 +chrX 2139734 . T . . END=2139986 GT:DP:GQ:MIN_DP:PL 0/0:64:64:64:0,64,997 +chrX 2139987 . C T, 786.64 . AS_QUALapprox=|794|0;AS_VarDP=32|31|0;BaseQRankSum=-0.637;DP=72;MQRankSum=0.000;QUALapprox=794;RAW_GT_COUNT=0,1,0;RAW_MQandDP=259200,72;ReadPosRankSum=-0.502;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:32,31,0:63:99:794,0,849,890,941,1831:16,16,15,16 +chrX 2139988 . T . . END=2140129 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,119,1758 +chrX 2140130 . T G, 1050.64 . AS_QUALapprox=|1058|0;AS_VarDP=32|28|0;BaseQRankSum=-0.085;DP=61;MQRankSum=0.000;QUALapprox=1058;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-0.022;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:32,28,0:60:99:0|1:2140130_T_G:1058,0,1218,1154,1302,2456:2140130:13,19,18,10 +chrX 2140131 . C T, 1050.64 . AS_QUALapprox=|1058|0;AS_VarDP=32|28|0;BaseQRankSum=0.226;DP=62;MQRankSum=0.000;QUALapprox=1058;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=0.022;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:32,28,0:60:99:0|1:2140130_T_G:1058,0,1218,1154,1302,2456:2140130:13,19,18,10 +chrX 2140132 . A . . END=2140260 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 2140261 . G T, 802.64 . AS_QUALapprox=|810|0;AS_VarDP=26|32|0;BaseQRankSum=0.417;DP=58;MQRankSum=0.000;QUALapprox=810;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-1.087;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:26,32,0:58:99:810,0,617,887,711,1598:9,17,13,19 +chrX 2140262 . A . . END=2140621 GT:DP:GQ:MIN_DP:PL 0/0:53:90:53:0,90,1414 +chrX 2140622 . T C, 1083.64 . AS_QUALapprox=|1091|0;AS_VarDP=16|29|0;BaseQRankSum=0.279;DP=45;MQRankSum=0.000;QUALapprox=1091;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=0.024;VarDP=45 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:16,29,0:45:99:0|1:2140622_T_C:1091,0,544,1139,631,1771:2140622:12,4,15,14 +chrX 2140623 . G . . END=2140639 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,109,1366 +chrX 2140640 . A C, 1096.64 . AS_QUALapprox=|1104|0;AS_VarDP=15|29|0;BaseQRankSum=-1.520;DP=45;MQRankSum=0.000;QUALapprox=1104;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=-0.381;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:15,29,0:44:99:0|1:2140622_T_C:1104,0,532,1149,620,1769:2140622:10,5,17,12 +chrX 2140641 . T . . END=2141083 GT:DP:GQ:MIN_DP:PL 0/0:51:86:51:0,86,1136 +chrX 2141084 . T C, 761.64 . AS_QUALapprox=|769|0;AS_VarDP=30|28|0;BaseQRankSum=0.317;DP=63;MQRankSum=0.000;QUALapprox=769;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=-0.179;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:30,28,0:58:99:769,0,828,859,913,1772:11,19,15,13 +chrX 2141085 . G . . END=2141130 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 2141131 . G A, 751.64 . AS_QUALapprox=|759|0;AS_VarDP=30|28|0;BaseQRankSum=0.629;DP=60;MQRankSum=0.000;QUALapprox=759;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=-1.891;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:30,28,0:58:99:759,0,793,848,878,1726:12,18,17,11 +chrX 2141132 . C . . END=2141228 GT:DP:GQ:MIN_DP:PL 0/0:62:96:62:0,96,1440 +chrX 2141229 . A . . END=2141240 GT:DP:GQ:MIN_DP:PL 0/0:55:0:55:0,0,371 +chrX 2141241 . A . . END=2141255 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,108,1620 +chrX 2141256 . TA T, 1205.60 . AS_QUALapprox=|1213|0;AS_VarDP=21|33|0;BaseQRankSum=0.546;DP=56;MQRankSum=-0.760;QUALapprox=1213;RAW_GT_COUNT=0,1,0;RAW_MQandDP=200809,56;ReadPosRankSum=0.417;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,33,0:54:99:0|1:2141256_TA_T:1213,0,724,1276,823,2099:2141256:7,14,17,16 +chrX 2141258 . GATAGATAGATA G, 1201.60 . AS_QUALapprox=|1209|0;AS_VarDP=22|33|0;BaseQRankSum=0.034;DP=56;MQRankSum=-0.779;QUALapprox=1209;RAW_GT_COUNT=0,1,0;RAW_MQandDP=200809,56;ReadPosRankSum=0.248;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,33,0:55:99:0|1:2141256_TA_T:1209,0,755,1276,855,2130:2141256:8,14,17,16 +chrX 2141270 . A . . END=2141492 GT:DP:GQ:MIN_DP:PL 0/0:71:84:71:0,84,1554 +chrX 2141493 . T C, 812.64 . AS_QUALapprox=|820|0;AS_VarDP=27|29|0;BaseQRankSum=0.564;DP=61;MQRankSum=0.000;QUALapprox=820;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=1.797;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:27,29,0:56:99:820,0,740,901,827,1728:13,14,13,16 +chrX 2141494 . A . . END=2141542 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 2141543 . T C, 827.64 . AS_QUALapprox=|835|0;AS_VarDP=32|32|0;BaseQRankSum=-0.591;DP=65;MQRankSum=0.000;QUALapprox=835;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=-1.626;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:32,32,0:64:99:835,0,860,932,956,1888:16,16,16,16 +chrX 2141544 . C . . END=2141731 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 2141732 . C G, 470.64 . AS_QUALapprox=|478|0;AS_VarDP=32|21|0;BaseQRankSum=0.630;DP=55;MQRankSum=0.000;QUALapprox=478;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=0.473;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:32,21,0:53:99:478,0,800,572,862,1434:13,19,8,13 +chrX 2141733 . C . . END=2142077 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,104,1449 +chrX 2142078 . C A, 567.64 . AS_QUALapprox=|575|0;AS_VarDP=28|22|0;BaseQRankSum=1.415;DP=52;MQRankSum=0.000;QUALapprox=575;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=-1.223;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:28,22,0:50:99:575,0,708,659,774,1433:14,14,10,12 +chrX 2142079 . G . . END=2142189 GT:DP:GQ:MIN_DP:PL 0/0:53:90:53:0,90,1499 +chrX 2142190 . T C, 612.64 . AS_QUALapprox=|620|0;AS_VarDP=24|24|0;BaseQRankSum=0.228;DP=49;MQRankSum=0.000;QUALapprox=620;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=-0.268;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:24,24,0:48:99:620,0,641,693,712,1405:8,16,9,15 +chrX 2142191 . A . . END=2142218 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,116,1464 +chrX 2142219 . A G, 530.64 . AS_QUALapprox=|538|0;AS_VarDP=24|20|0;BaseQRankSum=1.425;DP=48;MQRankSum=0.000;QUALapprox=538;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=0.932;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:24,20,0:44:99:538,0,652,610,712,1322:8,16,8,12 +chrX 2142220 . C . . END=2142315 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,104,1279 +chrX 2142316 . A G, 703.64 . AS_QUALapprox=|711|0;AS_VarDP=22|19|0;BaseQRankSum=1.111;DP=43;MQRankSum=0.000;QUALapprox=711;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154800,43;ReadPosRankSum=-0.068;VarDP=41 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,19,0:41:99:0|1:2142316_A_G:711,0,856,777,913,1690:2142316:9,13,12,7 +chrX 2142317 . T . . END=2142325 GT:DP:GQ:MIN_DP:PL 0/0:39:88:39:0,88,1187 +chrX 2142326 . A G, 666.64 . AS_QUALapprox=|674|0;AS_VarDP=24|18|0;BaseQRankSum=0.646;DP=46;MQRankSum=0.000;QUALapprox=674;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=0.776;VarDP=42 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,18,0:42:99:0|1:2142316_A_G:674,0,897,746,952,1697:2142316:9,15,11,7 +chrX 2142327 . A . . END=2142936 GT:DP:GQ:MIN_DP:PL 0/0:49:84:49:0,84,1162 +chrX 2142937 . GCA G, 909.60 . AS_QUALapprox=|917|0;AS_VarDP=30|24|0;BaseQRankSum=0.917;DP=54;MQRankSum=-1.569;QUALapprox=917;RAW_GT_COUNT=0,1,0;RAW_MQandDP=189589,54;ReadPosRankSum=-1.001;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:30,24,0:54:99:917,0,1182,1008,1254,2262:13,17,14,10 +chrX 2142940 . G . . END=2143099 GT:DP:GQ:MIN_DP:PL 0/0:50:81:50:0,81,1285 +chrX 2143100 . A G, 706.64 . AS_QUALapprox=|714|0;AS_VarDP=25|21|0;BaseQRankSum=-1.025;DP=46;MQRankSum=-1.047;QUALapprox=714;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165249,46;ReadPosRankSum=-1.650;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,21,0:46:99:0|1:2143100_A_G:714,0,945,789,1008,1797:2143100:14,11,8,13 +chrX 2143101 . G . . END=2143128 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,111,1381 +chrX 2143129 . T G, 500.64 . AS_QUALapprox=|508|0;AS_VarDP=28|15|0;BaseQRankSum=0.552;DP=44;MQRankSum=-1.744;QUALapprox=508;RAW_GT_COUNT=0,1,0;RAW_MQandDP=150611,44;ReadPosRankSum=0.068;VarDP=43 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,15,0:43:99:0|1:2143100_A_G:508,0,1048,592,1093,1686:2143100:17,11,9,6 +chrX 2143130 . G . . END=2143175 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,117,1588 +chrX 2143176 . A . . END=2143183 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1256 +chrX 2143184 . A . . END=2143208 GT:DP:GQ:MIN_DP:PL 0/0:45:31:43:0,31,1314 +chrX 2143209 . A . . END=2143216 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,827 +chrX 2143217 . A . . END=2143270 GT:DP:GQ:MIN_DP:PL 0/0:36:39:36:0,39,1082 +chrX 2143271 . C . . END=2143272 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,751 +chrX 2143273 . A . . END=2143293 GT:DP:GQ:MIN_DP:PL 0/0:41:29:39:0,29,1091 +chrX 2143294 . T . . END=2143294 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,48 +chrX 2143295 . G . . END=2143304 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,100,1231 +chrX 2143305 . T . . END=2143305 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,238 +chrX 2143306 . A . . END=2143317 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,116,1463 +chrX 2143318 . T . . END=2143318 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,209 +chrX 2143319 . G . . END=2143326 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 2143327 . T . . END=2143327 GT:DP:GQ:MIN_DP:PL 0/0:53:0:53:0,0,124 +chrX 2143328 . G . . END=2143344 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 2143345 . A . . END=2143345 GT:DP:GQ:MIN_DP:PL 0/0:61:0:61:0,0,292 +chrX 2143346 . A . . END=2143412 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 2143413 . G A, 1137.64 . AS_QUALapprox=|1145|0;AS_VarDP=35|31|0;BaseQRankSum=2.412;DP=66;MQRankSum=-1.032;QUALapprox=1145;RAW_GT_COUNT=0,1,0;RAW_MQandDP=236401,66;ReadPosRankSum=-2.307;VarDP=66 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:35,31,0:66:99:0|1:2143413_G_A:1145,0,1315,1250,1408,2659:2143413:16,19,14,17 +chrX 2143414 . A . . END=2143434 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 2143435 . C T, 1114.64 . AS_QUALapprox=|1122|0;AS_VarDP=36|31|0;BaseQRankSum=0.000;DP=70;MQRankSum=0.000;QUALapprox=1122;RAW_GT_COUNT=0,1,0;RAW_MQandDP=252000,70;ReadPosRankSum=-1.492;VarDP=67 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:36,31,0:67:99:0|1:2143413_G_A:1122,0,1336,1230,1429,2659:2143413:16,20,13,18 +chrX 2143436 . G . . END=2143492 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 2143493 . T C, 847.64 . AS_QUALapprox=|855|0;AS_VarDP=33|31|0;BaseQRankSum=-0.067;DP=64;MQRankSum=0.000;QUALapprox=855;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=0.732;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:33,31,0:64:99:855,0,924,954,1018,1972:18,15,17,14 +chrX 2143494 . T . . END=2143563 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 2143564 . G A, 757.64 . AS_QUALapprox=|765|0;AS_VarDP=32|29|0;BaseQRankSum=-0.115;DP=63;MQRankSum=-1.018;QUALapprox=765;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226009,63;ReadPosRankSum=-0.614;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:32,29,0:61:99:765,0,854,861,941,1802:15,17,14,15 +chrX 2143565 . T . . END=2143634 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,119,1687 +chrX 2143635 . T C, 605.64 . AS_QUALapprox=|613|0;AS_VarDP=35|25|0;BaseQRankSum=-0.430;DP=61;MQRankSum=0.000;QUALapprox=613;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=0.135;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:35,25,0:60:99:613,0,986,719,1061,1779:16,19,8,17 +chrX 2143636 . A . . END=2143706 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 2143707 . CAAG C, 781.60 . AS_QUALapprox=|789|0;AS_VarDP=31|21|0;BaseQRankSum=0.637;DP=56;MQRankSum=-1.176;QUALapprox=789;RAW_GT_COUNT=0,1,0;RAW_MQandDP=200025,56;ReadPosRankSum=0.795;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:31,21,0:52:99:789,0,1238,882,1302,2184:18,13,7,14 +chrX 2143711 . A . . END=2143779 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,99,1485 +chrX 2143780 . G GTATATATATATATATATATATATA,GTATATATATATATATATATATA, 465.60 . AS_QUALapprox=|473|125|0;AS_VarDP=28|11|2|0;BaseQRankSum=0.878;DP=47;MQRankSum=-3.805;QUALapprox=473;RAW_GT_COUNT=0,1,0;RAW_MQandDP=155474,47;ReadPosRankSum=-0.308;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:28,11,2,0:41:99:473,0,1123,348,1098,1495,504,1165,1513,1658:15,13,11,2 +chrX 2143781 . T . . END=2143797 GT:DP:GQ:MIN_DP:PL 0/0:54:33:48:0,33,1438 +chrX 2143798 . GTA G,ATA, 698.60 . AS_QUALapprox=|706|27|0;AS_VarDP=34|19|2|0;BaseQRankSum=0.967;DP=56;MQRankSum=-3.249;QUALapprox=706;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187874,56;ReadPosRankSum=-0.968;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:34,19,2,0:55:99:706,0,1386,679,1347,2075,780,1429,2090,2198:20,14,16,5 +chrX 2143801 . T . . END=2144077 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,115,1447 +chrX 2144078 . C G, 1841.06 . AS_QUALapprox=|1855|0;AS_VarDP=0|57|0;DP=60;QUALapprox=1855;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1855,171,0,1855,171,1855:0,0,32,25 +chrX 2144079 . C . . END=2144262 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 2144263 . T C, 1153.64 . AS_QUALapprox=|1161|0;AS_VarDP=33|31|0;BaseQRankSum=0.222;DP=67;MQRankSum=0.000;QUALapprox=1161;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=-0.426;VarDP=64 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:33,31,0:64:99:0|1:2144263_T_C:1161,0,1270,1260,1363,2623:2144263:21,12,16,15 +chrX 2144264 . T . . END=2144265 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 2144266 . T C, 1153.64 . AS_QUALapprox=|1161|0;AS_VarDP=33|31|0;BaseQRankSum=1.334;DP=65;MQRankSum=0.000;QUALapprox=1161;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=-0.578;VarDP=64 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:33,31,0:64:99:0|1:2144263_T_C:1161,0,1270,1260,1363,2623:2144263:21,12,16,15 +chrX 2144267 . A . . END=2144364 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 2144365 . T C, 669.64 . AS_QUALapprox=|677|0;AS_VarDP=29|25|0;BaseQRankSum=0.550;DP=55;MQRankSum=0.000;QUALapprox=677;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=1.345;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:29,25,0:54:99:677,0,796,764,871,1635:17,12,13,12 +chrX 2144366 . G . . END=2144408 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 2144409 . C T, 840.64 . AS_QUALapprox=|848|0;AS_VarDP=33|33|0;BaseQRankSum=-1.043;DP=68;MQRankSum=0.000;QUALapprox=848;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=-0.609;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:33,33,0:66:99:848,0,873,947,973,1920:15,18,14,19 +chrX 2144410 . G . . END=2144532 GT:DP:GQ:MIN_DP:PL 0/0:75:99:75:0,120,1800 +chrX 2144533 . T C, 876.64 . AS_QUALapprox=|884|0;AS_VarDP=32|34|0;BaseQRankSum=-1.924;DP=68;MQRankSum=0.000;QUALapprox=884;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=0.058;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:32,34,0:66:99:884,0,869,979,971,1950:15,17,19,15 +chrX 2144534 . G . . END=2145042 GT:DP:GQ:MIN_DP:PL 0/0:60:87:60:0,87,1583 +chrX 2145043 . A G, 949.64 . AS_QUALapprox=|957|0;AS_VarDP=26|34|0;BaseQRankSum=0.777;DP=61;MQRankSum=0.000;QUALapprox=957;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=0.418;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:26,34,0:60:99:957,0,669,1034,771,1805:12,14,20,14 +chrX 2145044 . A . . END=2146277 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,116,1593 +chrX 2146278 . A G, 784.64 . AS_QUALapprox=|792|0;AS_VarDP=23|29|0;BaseQRankSum=0.467;DP=57;MQRankSum=0.000;QUALapprox=792;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=0.756;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:23,29,0:52:99:792,0,582,861,669,1530:11,12,6,23 +chrX 2146279 . A . . END=2146596 GT:DP:GQ:MIN_DP:PL 0/0:52:93:52:0,93,1310 +chrX 2146597 . A G, 447.64 . AS_QUALapprox=|455|0;AS_VarDP=30|20|0;BaseQRankSum=-3.142;DP=50;MQRankSum=0.000;QUALapprox=455;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=-0.367;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:30,20,0:50:99:455,0,894,545,953,1498:15,15,12,8 +chrX 2146598 . G . . END=2146968 GT:DP:GQ:MIN_DP:PL 0/0:36:22:36:0,22,1011 +chrX 2146969 . T . . END=2146969 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,973 +chrX 2146970 . T TG, 236.60 . AS_QUALapprox=|244|0;AS_VarDP=5|11|0;BaseQRankSum=0.000;DP=31;MQRankSum=0.000;QUALapprox=244;RAW_GT_COUNT=0,1,0;RAW_MQandDP=111600,31;ReadPosRankSum=2.041;VarDP=16 GT:AD:DP:GQ:PL:SB 0/1:5,11,0:16:90:244,0,90,260,123,383:5,0,11,0 +chrX 2146971 . G . . END=2146981 GT:DP:GQ:MIN_DP:PL 0/0:30:65:30:0,65,829 +chrX 2146982 . C . . END=2146982 GT:DP:GQ:MIN_DP:PL 0/0:17:0:17:0,0,313 +chrX 2146983 . G . . END=2146986 GT:DP:GQ:MIN_DP:PL 0/0:27:22:27:0,22,738 +chrX 2146987 . A . . END=2146987 GT:DP:GQ:MIN_DP:PL 0/0:32:7:32:0,7,774 +chrX 2146988 . C . . END=2148423 GT:DP:GQ:MIN_DP:PL 0/0:56:89:56:0,89,1007 +chrX 2148424 . G A, 663.64 . AS_QUALapprox=|671|0;AS_VarDP=31|25|0;BaseQRankSum=0.449;DP=59;MQRankSum=0.000;QUALapprox=671;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=1.336;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:31,25,0:56:99:671,0,859,764,934,1698:15,16,13,12 +chrX 2148425 . A . . END=2148634 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 2148635 . T C, 999.64 . AS_QUALapprox=|1007|0;AS_VarDP=33|27|0;BaseQRankSum=1.873;DP=61;MQRankSum=0.000;QUALapprox=1007;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-0.580;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:33,27,0:60:99:0|1:2148635_T_C:1007,0,1292,1106,1374,2480:2148635:11,22,12,15 +chrX 2148636 . C T, 999.64 . AS_QUALapprox=|1007|0;AS_VarDP=33|27|0;BaseQRankSum=-0.228;DP=61;MQRankSum=0.000;QUALapprox=1007;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-0.275;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:33,27,0:60:99:0|1:2148635_T_C:1007,0,1292,1106,1374,2480:2148635:11,22,12,15 +chrX 2148637 . G . . END=2148665 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,118,1800 +chrX 2148666 . G A, 944.64 . AS_QUALapprox=|952|0;AS_VarDP=36|26|0;BaseQRankSum=1.602;DP=64;MQRankSum=0.000;QUALapprox=952;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=0.093;VarDP=62 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:36,26,0:62:99:0|1:2148666_G_A:952,0,1411,1061,1490,2550:2148666:13,23,12,14 +chrX 2148667 . T . . END=2148674 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 2148675 . A C, 957.64 . AS_QUALapprox=|965|0;AS_VarDP=35|26|0;BaseQRankSum=-0.334;DP=62;MQRankSum=0.000;QUALapprox=965;RAW_GT_COUNT=0,1,0;RAW_MQandDP=222516,62;ReadPosRankSum=-0.468;VarDP=61 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:35,26,0:61:99:0|1:2148666_G_A:965,0,1380,1071,1458,2529:2148666:13,22,11,15 +chrX 2148676 . A . . END=2149141 GT:DP:GQ:MIN_DP:PL 0/0:53:92:53:0,92,1330 +chrX 2149142 . C T, 627.64 . AS_QUALapprox=|635|0;AS_VarDP=15|23|0;BaseQRankSum=-0.622;DP=41;MQRankSum=0.000;QUALapprox=635;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147600,41;ReadPosRankSum=-1.120;VarDP=38 GT:AD:DP:GQ:PL:SB 0/1:15,23,0:38:99:635,0,387,680,456,1137:8,7,10,13 +chrX 2149143 . T . . END=2149306 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,101,1446 +chrX 2149307 . G A, 550.64 . AS_QUALapprox=|558|0;AS_VarDP=26|20|0;BaseQRankSum=2.902;DP=47;MQRankSum=0.000;QUALapprox=558;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=0.754;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:26,20,0:46:99:558,0,631,635,691,1326:16,10,7,13 +chrX 2149308 . T . . END=2149492 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,101,1329 +chrX 2149493 . A C, 743.64 . AS_QUALapprox=|751|0;AS_VarDP=25|26|0;BaseQRankSum=1.485;DP=51;MQRankSum=0.000;QUALapprox=751;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-0.726;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:25,26,0:51:99:751,0,666,826,744,1570:11,14,17,9 +chrX 2149494 . T . . END=2149899 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,108,1420 +chrX 2149900 . T C, 717.64 . AS_QUALapprox=|725|0;AS_VarDP=22|29|0;BaseQRankSum=-1.612;DP=53;MQRankSum=0.000;QUALapprox=725;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=0.942;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:22,29,0:51:99:725,0,568,791,654,1445:12,10,15,14 +chrX 2149901 . G . . END=2150825 GT:DP:GQ:MIN_DP:PL 0/0:54:39:42:0,39,1085 +chrX 2150826 . AT A, 834.60 . AS_QUALapprox=|842|0;AS_VarDP=33|23|0;BaseQRankSum=-0.522;DP=58;MQRankSum=0.000;QUALapprox=842;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=1.171;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:33,23,0:56:99:0|1:2150826_AT_A:842,0,1262,941,1331,2273:2150826:22,11,10,13 +chrX 2150828 . T . . END=2150831 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 2150832 . T C, 834.64 . AS_QUALapprox=|842|0;AS_VarDP=33|23|0;BaseQRankSum=-0.841;DP=56;MQRankSum=0.000;QUALapprox=842;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=1.125;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:33,23,0:56:99:0|1:2150826_AT_A:842,0,1262,941,1331,2273:2150826:22,11,10,13 +chrX 2150833 . T . . END=2156422 GT:DP:GQ:MIN_DP:PL 0/0:57:33:40:0,33,1058 +chrX 2156423 . AG A, 668.60 . AS_QUALapprox=|676|0;AS_VarDP=29|25|0;BaseQRankSum=-0.597;DP=57;MQRankSum=0.000;QUALapprox=676;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-0.764;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:29,25,0:54:99:676,0,769,763,844,1607:17,12,10,15 +chrX 2156425 . G . . END=2156520 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,99,1781 +chrX 2156521 . T G, 581.64 . AS_QUALapprox=|589|0;AS_VarDP=34|23|0;BaseQRankSum=0.135;DP=57;MQRankSum=0.000;QUALapprox=589;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-0.968;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:34,23,0:57:99:589,0,921,690,990,1680:15,19,8,15 +chrX 2156522 . T . . END=2156614 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 2156615 . T C, 593.64 . AS_QUALapprox=|601|0;AS_VarDP=27|24|0;BaseQRankSum=-0.464;DP=51;MQRankSum=0.000;QUALapprox=601;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=1.897;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:27,24,0:51:99:601,0,700,682,772,1454:14,13,15,9 +chrX 2156616 . A . . END=2156832 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 2156833 . C T, 704.64 . AS_QUALapprox=|712|0;AS_VarDP=29|28|0;BaseQRankSum=-1.185;DP=58;MQRankSum=-1.783;QUALapprox=712;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198002,58;ReadPosRankSum=1.046;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:29,28,0:57:99:712,0,772,799,856,1655:12,17,11,17 +chrX 2156834 . G . . END=2156887 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 2156888 . A G, 674.64 . AS_QUALapprox=|682|0;AS_VarDP=36|29|0;BaseQRankSum=-2.317;DP=69;MQRankSum=-4.820;QUALapprox=682;RAW_GT_COUNT=0,1,0;RAW_MQandDP=224491,69;ReadPosRankSum=-1.215;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:36,29,0:65:99:682,0,1016,790,1102,1892:19,17,10,19 +chrX 2156889 . A . . END=2156932 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 2156933 . A G, 1116.64 . AS_QUALapprox=|1124|0;AS_VarDP=28|30|0;BaseQRankSum=-2.840;DP=59;MQRankSum=-4.954;QUALapprox=1124;RAW_GT_COUNT=0,1,0;RAW_MQandDP=186808,59;ReadPosRankSum=-1.727;VarDP=58 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,30,0:58:99:0|1:2156933_A_G:1124,0,1054,1208,1144,2352:2156933:15,13,12,18 +chrX 2156934 . T . . END=2156940 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 2156941 . C T, 1185.64 . AS_QUALapprox=|1193|0;AS_VarDP=26|32|0;BaseQRankSum=-0.084;DP=60;MQRankSum=-4.622;QUALapprox=1193;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190408,60;ReadPosRankSum=-2.268;VarDP=58 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,32,0:58:99:0|1:2156933_A_G:1193,0,974,1271,1071,2342:2156933:15,11,14,18 +chrX 2156942 . A . . END=2156953 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 2156954 . A AT, 1034.60 . AS_QUALapprox=|1042|0;AS_VarDP=31|31|0;BaseQRankSum=-0.055;DP=65;MQRankSum=-4.893;QUALapprox=1042;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208983,65;ReadPosRankSum=-0.148;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:31,31,0:62:99:1042,0,986,1135,1080,2215:18,13,14,17 +chrX 2156955 . A . . END=2157065 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,100,1223 +chrX 2157066 . G C, 401.64 . AS_QUALapprox=|409|0;AS_VarDP=17|17|0;BaseQRankSum=-0.401;DP=35;MQRankSum=-1.393;QUALapprox=409;RAW_GT_COUNT=0,1,0;RAW_MQandDP=123010,35;ReadPosRankSum=-2.050;VarDP=34 GT:AD:DP:GQ:PL:SB 0/1:17,17,0:34:99:409,0,435,460,485,945:10,7,9,8 +chrX 2157067 . T . . END=2157103 GT:DP:GQ:MIN_DP:PL 0/0:38:54:33:0,54,962 +chrX 2157104 . C . . END=2157104 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,772 +chrX 2157105 . A . . END=2157702 GT:DP:GQ:MIN_DP:PL 0/0:59:76:59:0,76,1369 +chrX 2157703 . C T, 778.64 . AS_QUALapprox=|786|0;AS_VarDP=23|28|0;BaseQRankSum=0.284;DP=54;MQRankSum=0.000;QUALapprox=786;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=0.672;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:23,28,0:51:99:786,0,597,854,680,1535:11,12,14,14 +chrX 2157704 . A . . END=2157887 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 2157888 . G C, 782.64 . AS_QUALapprox=|790|0;AS_VarDP=28|33|0;BaseQRankSum=-1.204;DP=62;MQRankSum=0.000;QUALapprox=790;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=0.499;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:28,33,0:61:99:790,0,706,873,804,1678:15,13,20,13 +chrX 2157889 . A . . END=2158097 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 2158098 . C A, 1468.64 . AS_QUALapprox=|1476|0;AS_VarDP=33|38|0;BaseQRankSum=-0.352;DP=71;MQRankSum=0.000;QUALapprox=1476;RAW_GT_COUNT=0,1,0;RAW_MQandDP=255600,71;ReadPosRankSum=0.271;VarDP=71 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:33,38,0:71:99:0|1:2158098_C_A:1476,0,1238,1575,1353,2928:2158098:20,13,21,17 +chrX 2158099 . C . . END=2158100 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 2158101 . C T, 1471.64 . AS_QUALapprox=|1479|0;AS_VarDP=32|38|0;BaseQRankSum=0.000;DP=72;MQRankSum=0.000;QUALapprox=1479;RAW_GT_COUNT=0,1,0;RAW_MQandDP=259200,72;ReadPosRankSum=0.111;VarDP=70 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:32,38,0:70:99:0|1:2158098_C_A:1479,0,1208,1575,1323,2898:2158098:20,12,21,17 +chrX 2158102 . A . . END=2159202 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,100,1483 +chrX 2159203 . C G, 487.64 . AS_QUALapprox=|495|0;AS_VarDP=29|21|0;BaseQRankSum=-0.703;DP=51;MQRankSum=0.000;QUALapprox=495;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=0.659;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:29,21,0:50:99:495,0,773,582,836,1418:12,17,9,12 +chrX 2159204 . T . . END=2159641 GT:DP:GQ:MIN_DP:PL 0/0:50:80:50:0,80,1251 +chrX 2159642 . G T, 867.64 . AS_QUALapprox=|875|0;AS_VarDP=38|36|0;BaseQRankSum=-1.718;DP=76;MQRankSum=0.000;QUALapprox=875;RAW_GT_COUNT=0,1,0;RAW_MQandDP=273600,76;ReadPosRankSum=1.325;VarDP=74 GT:AD:DP:GQ:PL:SB 0/1:38,36,0:74:99:875,0,1020,989,1126,2115:12,26,22,14 +chrX 2159643 . C . . END=2159675 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 2159676 . G A, 881.64 . AS_QUALapprox=|889|0;AS_VarDP=31|35|0;BaseQRankSum=-0.273;DP=69;MQRankSum=0.000;QUALapprox=889;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=0.341;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:31,35,0:66:99:889,0,784,981,888,1869:10,21,20,15 +chrX 2159677 . A . . END=2160057 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,116,1683 +chrX 2160058 . C G, 659.64 . AS_QUALapprox=|667|0;AS_VarDP=28|26|0;BaseQRankSum=0.375;DP=58;MQRankSum=0.000;QUALapprox=667;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=0.364;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:28,26,0:54:99:667,0,731,751,809,1560:12,16,12,14 +chrX 2160059 . A . . END=2160270 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,108,1800 +chrX 2160271 . T A, 772.64 . AS_QUALapprox=|780|0;AS_VarDP=36|30|0;BaseQRankSum=0.540;DP=69;MQRankSum=0.000;QUALapprox=780;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=-0.850;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:36,30,0:66:99:780,0,959,888,1048,1936:19,17,16,14 +chrX 2160272 . C . . END=2160419 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 2160420 . T C, 480.64 . AS_QUALapprox=|488|0;AS_VarDP=33|21|0;BaseQRankSum=-0.907;DP=54;MQRankSum=0.000;QUALapprox=488;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=0.950;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:33,21,0:54:99:488,0,935,587,998,1585:13,20,10,11 +chrX 2160421 . T . . END=2160553 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,108,1609 +chrX 2160554 . C T, 382.64 . AS_QUALapprox=|390|0;AS_VarDP=33|16|0;BaseQRankSum=2.120;DP=54;MQRankSum=0.000;QUALapprox=390;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=2.474;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:33,16,0:49:99:390,0,830,488,878,1366:14,19,7,9 +chrX 2160555 . G . . END=2160601 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 2160602 . A G, 752.64 . AS_QUALapprox=|760|0;AS_VarDP=26|28|0;BaseQRankSum=-0.161;DP=58;MQRankSum=0.000;QUALapprox=760;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-2.053;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:26,28,0:54:99:760,0,684,838,768,1606:10,16,14,14 +chrX 2160603 . A . . END=2160768 GT:DP:GQ:MIN_DP:PL 0/0:42:80:42:0,80,1036 +chrX 2160769 . T C, 663.64 . AS_QUALapprox=|671|0;AS_VarDP=24|25|0;BaseQRankSum=0.752;DP=50;MQRankSum=0.000;QUALapprox=671;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=-2.161;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:24,25,0:49:99:671,0,617,743,692,1435:11,13,15,10 +chrX 2160770 . G . . END=2160806 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 2160807 . C T, 605.64 . AS_QUALapprox=|613|0;AS_VarDP=24|23|0;BaseQRankSum=1.654;DP=47;MQRankSum=0.000;QUALapprox=613;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=-0.798;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:24,23,0:47:99:613,0,569,684,638,1322:11,13,17,6 +chrX 2160808 . G . . END=2160847 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,105,1226 +chrX 2160848 . G A, 523.64 . AS_QUALapprox=|531|0;AS_VarDP=21|19|0;BaseQRankSum=2.743;DP=40;MQRankSum=0.000;QUALapprox=531;RAW_GT_COUNT=0,1,0;RAW_MQandDP=144000,40;ReadPosRankSum=2.520;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:21,19,0:40:99:531,0,490,593,547,1140:10,11,15,4 +chrX 2160849 . C . . END=2160891 GT:DP:GQ:MIN_DP:PL 0/0:35:41:35:0,41,833 +chrX 2160892 . C A,CAAAAA,CAAAAAAA, 754.60 . AS_QUALapprox=|0|762|673|0;AS_VarDP=13|2|6|5|0;BaseQRankSum=-1.477;DP=51;MQRankSum=0.111;QUALapprox=762;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180916,51;ReadPosRankSum=-0.771;VarDP=26 GT:AD:DP:GQ:PL:SB 0/2:13,2,6,5,0:26:89:762,768,1398,0,395,489,89,483,443,579,781,1171,556,644,1327:10,3,4,9 +chrX 2160893 . A . . END=2160909 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,118,1583 +chrX 2160910 . C . . END=2160910 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,1072 +chrX 2160911 . A . . END=2160950 GT:DP:GQ:MIN_DP:PL 0/0:51:60:51:0,60,1245 +chrX 2160951 . A G, 898.64 . AS_QUALapprox=|906|0;AS_VarDP=27|24|0;BaseQRankSum=1.930;DP=52;MQRankSum=0.000;QUALapprox=906;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=-0.387;VarDP=51 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,24,0:51:99:0|1:2160951_A_G:906,0,1040,987,1112,2099:2160951:16,11,8,16 +chrX 2160952 . G . . END=2160967 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 2160968 . G GA, 960.60 . AS_QUALapprox=|968|0;AS_VarDP=27|25|0;BaseQRankSum=2.729;DP=53;MQRankSum=0.000;QUALapprox=968;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=-0.476;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,25,0:52:99:0|1:2160951_A_G:968,0,1058,1050,1134,2183:2160951:16,11,10,15 +chrX 2160969 . G A, 960.64 . AS_QUALapprox=|968|0;AS_VarDP=27|25|0;BaseQRankSum=2.441;DP=53;MQRankSum=0.000;QUALapprox=968;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=-0.467;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,25,0:52:99:0|1:2160951_A_G:968,0,1058,1050,1134,2183:2160951:16,11,10,15 +chrX 2160970 . G . . END=2161024 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 2161025 . C A, 723.64 . AS_QUALapprox=|731|0;AS_VarDP=31|28|0;BaseQRankSum=0.090;DP=60;MQRankSum=0.000;QUALapprox=731;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=0.904;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:31,28,0:59:99:731,0,841,824,924,1749:17,14,15,13 +chrX 2161026 . A . . END=2161155 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 2161156 . CAAATT C, 1225.60 . AS_QUALapprox=|1233|0;AS_VarDP=37|32|0;BaseQRankSum=2.002;DP=75;MQRankSum=0.000;QUALapprox=1233;RAW_GT_COUNT=0,1,0;RAW_MQandDP=270000,75;ReadPosRankSum=0.738;VarDP=69 GT:AD:DP:GQ:PL:SB 0/1:37,32,0:69:99:1233,0,1437,1344,1533,2877:22,15,16,16 +chrX 2161162 . A . . END=2161185 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 2161186 . C G, 842.64 . AS_QUALapprox=|850|0;AS_VarDP=36|32|0;BaseQRankSum=1.138;DP=68;MQRankSum=0.000;QUALapprox=850;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=0.719;VarDP=68 GT:AD:DP:GQ:PL:SB 0/1:36,32,0:68:99:850,0,933,957,1029,1985:19,17,18,14 +chrX 2161187 . T . . END=2161244 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 2161245 . T C, 1247.64 . AS_QUALapprox=|1255|0;AS_VarDP=40|33|0;BaseQRankSum=2.375;DP=74;MQRankSum=0.000;QUALapprox=1255;RAW_GT_COUNT=0,1,0;RAW_MQandDP=266400,74;ReadPosRankSum=-0.748;VarDP=73 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:40,33,0:73:99:0|1:2161245_T_C:1255,0,1559,1375,1659,3034:2161245:20,20,17,16 +chrX 2161246 . C . . END=2161254 GT:DP:GQ:MIN_DP:PL 0/0:74:99:74:0,120,1800 +chrX 2161255 . G A, 1263.64 . AS_QUALapprox=|1271|0;AS_VarDP=42|34|0;BaseQRankSum=1.864;DP=78;MQRankSum=0.000;QUALapprox=1271;RAW_GT_COUNT=0,1,0;RAW_MQandDP=280800,78;ReadPosRankSum=-0.942;VarDP=76 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:42,34,0:76:99:0|1:2161245_T_C:1271,0,1620,1397,1722,3119:2161245:22,20,17,17 +chrX 2161256 . G . . END=2161330 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 2161331 . G A, 836.64 . AS_QUALapprox=|844|0;AS_VarDP=34|32|0;BaseQRankSum=-0.118;DP=69;MQRankSum=-1.000;QUALapprox=844;RAW_GT_COUNT=0,1,0;RAW_MQandDP=247609,69;ReadPosRankSum=0.526;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:34,32,0:66:99:844,0,912,946,1008,1954:21,13,12,20 +chrX 2161332 . G . . END=2161369 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 2161370 . C T, 1283.64 . AS_QUALapprox=|1291|0;AS_VarDP=31|33|0;BaseQRankSum=-1.668;DP=64;MQRankSum=0.000;QUALapprox=1291;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=-0.452;VarDP=64 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:31,33,0:64:99:0|1:2161370_C_T:1291,0,1151,1384,1250,2634:2161370:17,14,12,21 +chrX 2161371 . T . . END=2161376 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 2161377 . C G, 1315.64 . AS_QUALapprox=|1323|0;AS_VarDP=31|34|0;BaseQRankSum=0.359;DP=66;MQRankSum=0.000;QUALapprox=1323;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=-0.020;VarDP=65 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:31,34,0:65:99:0|1:2161370_C_T:1323,0,1148,1416,1250,2666:2161370:17,14,13,21 +chrX 2161378 . C . . END=2161442 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 2161443 . A G, 889.64 . AS_QUALapprox=|897|0;AS_VarDP=29|31|0;BaseQRankSum=2.140;DP=60;MQRankSum=0.000;QUALapprox=897;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=0.718;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:29,31,0:60:99:897,0,786,984,880,1864:10,19,9,22 +chrX 2161444 . G . . END=2161666 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,115,1468 +chrX 2161667 . T C, 854.64 . AS_QUALapprox=|862|0;AS_VarDP=31|23|0;BaseQRankSum=-1.049;DP=55;MQRankSum=0.000;QUALapprox=862;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=2.275;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:31,23,0:54:99:0|1:2161667_T_C:862,0,1199,955,1268,2223:2161667:19,12,11,12 +chrX 2161668 . A . . END=2161670 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 2161671 . C T, 854.64 . AS_QUALapprox=|862|0;AS_VarDP=31|23|0;BaseQRankSum=-0.064;DP=55;MQRankSum=0.000;QUALapprox=862;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=2.055;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:31,23,0:54:99:0|1:2161667_T_C:862,0,1199,955,1268,2223:2161667:19,12,11,12 +chrX 2161672 . G . . END=2161744 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 2161745 . C T, 461.64 . AS_QUALapprox=|469|0;AS_VarDP=28|19|0;BaseQRankSum=-1.365;DP=49;MQRankSum=0.000;QUALapprox=469;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=-2.006;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:28,19,0:47:99:469,0,802,553,859,1412:16,12,8,11 +chrX 2161746 . A . . END=2161801 GT:DP:GQ:MIN_DP:PL 0/0:41:77:41:0,77,1148 +chrX 2161802 . A G, 462.64 . AS_QUALapprox=|470|0;AS_VarDP=24|14|0;BaseQRankSum=0.536;DP=39;MQRankSum=0.000;QUALapprox=470;RAW_GT_COUNT=0,1,0;RAW_MQandDP=140400,39;ReadPosRankSum=-0.227;VarDP=38 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,14,0:38:99:0|1:2161802_A_G:470,0,884,543,926,1469:2161802:13,11,9,5 +chrX 2161803 . T . . END=2161822 GT:DP:GQ:MIN_DP:PL 0/0:39:87:39:0,87,1176 +chrX 2161823 . T C, 551.64 . AS_QUALapprox=|559|0;AS_VarDP=24|16|0;BaseQRankSum=0.690;DP=43;MQRankSum=0.000;QUALapprox=559;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154800,43;ReadPosRankSum=1.145;VarDP=40 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,16,0:40:99:0|1:2161802_A_G:559,0,868,631,916,1547:2161802:13,11,8,8 +chrX 2161824 . A . . END=2161902 GT:DP:GQ:MIN_DP:PL 0/0:56:94:56:0,94,1344 +chrX 2161903 . T C, 665.64 . AS_QUALapprox=|673|0;AS_VarDP=30|27|0;BaseQRankSum=-1.431;DP=59;MQRankSum=0.000;QUALapprox=673;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=0.480;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:30,27,0:57:99:673,0,817,762,898,1660:14,16,14,13 +chrX 2161904 . G . . END=2162304 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 2162305 . G GC, 980.60 . AS_QUALapprox=|988|0;AS_VarDP=26|31|0;BaseQRankSum=0.704;DP=60;MQRankSum=0.000;QUALapprox=988;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=0.802;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:26,31,0:57:99:988,0,793,1066,886,1952:12,14,15,16 +chrX 2162306 . C . . END=2162355 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 2162356 . AG A, 986.60 . AS_QUALapprox=|994|0;AS_VarDP=25|26|0;BaseQRankSum=-1.031;DP=54;MQRankSum=0.000;QUALapprox=994;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=1.155;VarDP=51 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,26,0:51:99:0|1:2162356_AG_A:994,0,959,1069,1037,2106:2162356:13,12,12,14 +chrX 2162358 . G . . END=2162363 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,115,1527 +chrX 2162364 . G A, 978.64 . AS_QUALapprox=|986|0;AS_VarDP=25|26|0;BaseQRankSum=-0.205;DP=52;MQRankSum=0.000;QUALapprox=986;RAW_GT_COUNT=0,1,0;RAW_MQandDP=185716,52;ReadPosRankSum=0.669;VarDP=51 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,26,0:51:99:0|1:2162356_AG_A:986,0,961,1061,1039,2101:2162356:14,11,12,14 +chrX 2162365 . A . . END=2162429 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,103,1552 +chrX 2162430 . G T, 958.64 . AS_QUALapprox=|966|0;AS_VarDP=39|37|0;BaseQRankSum=1.191;DP=79;MQRankSum=1.000;QUALapprox=966;RAW_GT_COUNT=0,1,0;RAW_MQandDP=282341,79;ReadPosRankSum=0.541;VarDP=76 GT:AD:DP:GQ:PL:SB 0/1:39,37,0:76:99:966,0,982,1083,1093,2176:18,21,19,18 +chrX 2162431 . G . . END=2162710 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,102,1412 +chrX 2162711 . C G, 922.64 . AS_QUALapprox=|930|0;AS_VarDP=39|36|0;BaseQRankSum=0.806;DP=75;MQRankSum=0.000;QUALapprox=930;RAW_GT_COUNT=0,1,0;RAW_MQandDP=270000,75;ReadPosRankSum=-0.981;VarDP=75 GT:AD:DP:GQ:PL:SB 0/1:39,36,0:75:99:930,0,995,1047,1103,2150:23,16,23,13 +chrX 2162712 . G . . END=2162982 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,115,1736 +chrX 2162983 . T C, 945.64 . AS_QUALapprox=|953|0;AS_VarDP=41|37|0;BaseQRankSum=-0.066;DP=81;MQRankSum=0.000;QUALapprox=953;RAW_GT_COUNT=0,1,0;RAW_MQandDP=291600,81;ReadPosRankSum=-0.761;VarDP=78 GT:AD:DP:GQ:PL:SB 0/1:41,37,0:78:99:953,0,1094,1076,1205,2281:22,19,16,21 +chrX 2162984 . C . . END=2163002 GT:DP:GQ:MIN_DP:PL 0/0:76:99:76:0,120,1800 +chrX 2163003 . A C, 772.64 . AS_QUALapprox=|780|0;AS_VarDP=45|31|0;BaseQRankSum=0.864;DP=77;MQRankSum=0.857;QUALapprox=780;RAW_GT_COUNT=0,1,0;RAW_MQandDP=276001,77;ReadPosRankSum=1.063;VarDP=76 GT:AD:DP:GQ:PL:SB 0/1:45,31,0:76:99:780,0,1179,914,1272,2186:21,24,15,16 +chrX 2163004 . C . . END=2163357 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 2163358 . CT C, 395.60 . AS_QUALapprox=|403|0;AS_VarDP=34|20|0;BaseQRankSum=-0.493;DP=58;MQRankSum=0.000;QUALapprox=403;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=0.735;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:34,20,0:54:99:403,0,790,505,850,1355:15,19,6,14 +chrX 2163360 . T . . END=2163976 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 2163977 . T C, 805.64 . AS_QUALapprox=|813|0;AS_VarDP=22|31|0;BaseQRankSum=-1.329;DP=59;MQRankSum=0.000;QUALapprox=813;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-0.542;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:22,31,0:53:99:813,0,576,879,669,1548:9,13,14,17 +chrX 2163978 . G . . END=2164043 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,104,1345 +chrX 2164044 . CAA C, 551.60 . AS_QUALapprox=|559|0;AS_VarDP=20|20|0;BaseQRankSum=1.066;DP=57;MQRankSum=-0.950;QUALapprox=559;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201536,57;ReadPosRankSum=0.784;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:20,20,0:40:99:559,0,543,620,604,1223:9,11,10,10 +chrX 2164047 . A . . END=2164059 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 2164060 . A . . END=2164062 GT:DP:GQ:MIN_DP:PL 0/0:56:0:56:0,0,1403 +chrX 2164063 . T . . END=2164525 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,101,1391 +chrX 2164526 . T C, 851.64 . AS_QUALapprox=|859|0;AS_VarDP=33|33|0;BaseQRankSum=-0.785;DP=69;MQRankSum=1.030;QUALapprox=859;RAW_GT_COUNT=0,1,0;RAW_MQandDP=243674,69;ReadPosRankSum=-0.398;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:33,33,0:66:99:859,0,874,958,973,1931:18,15,22,11 +chrX 2164527 . G . . END=2164569 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 2164570 . C G, 658.64 . AS_QUALapprox=|666|0;AS_VarDP=36|25|0;BaseQRankSum=0.412;DP=64;MQRankSum=0.000;QUALapprox=666;RAW_GT_COUNT=0,1,0;RAW_MQandDP=229104,64;ReadPosRankSum=-0.557;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:36,25,0:61:99:666,0,1026,774,1101,1875:17,19,14,11 +chrX 2164571 . C . . END=2164624 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 2164625 . C T, 522.64 . AS_QUALapprox=|530|0;AS_VarDP=35|20|0;BaseQRankSum=2.136;DP=56;MQRankSum=0.000;QUALapprox=530;RAW_GT_COUNT=0,1,0;RAW_MQandDP=200304,56;ReadPosRankSum=-0.175;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:35,20,0:55:99:530,0,981,635,1041,1676:18,17,12,8 +chrX 2164626 . G . . END=2164682 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 2164683 . C CA, 661.60 . AS_QUALapprox=|669|0;AS_VarDP=31|25|0;BaseQRankSum=-1.066;DP=57;MQRankSum=0.000;QUALapprox=669;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-1.055;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:31,25,0:56:99:669,0,896,762,972,1734:15,16,10,15 +chrX 2164684 . A . . END=2164893 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,100,1478 +chrX 2164894 . AGTGT A, 473.60 . AS_QUALapprox=|481|0;AS_VarDP=18|13|0;BaseQRankSum=-0.497;DP=48;MQRankSum=0.000;QUALapprox=481;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=-1.804;VarDP=31 GT:AD:DP:GQ:PL:SB 0/1:18,13,0:31:99:481,0,706,536,745,1281:7,11,8,5 +chrX 2164899 . G . . END=2165140 GT:DP:GQ:MIN_DP:PL 0/0:63:81:63:0,81,1449 +chrX 2165141 . T C, 631.64 . AS_QUALapprox=|639|0;AS_VarDP=32|26|0;BaseQRankSum=-1.868;DP=59;MQRankSum=0.000;QUALapprox=639;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-0.907;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:32,26,0:58:99:639,0,919,735,996,1731:18,14,13,13 +chrX 2165142 . A . . END=2165255 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 2165256 . A G, 795.64 . AS_QUALapprox=|803|0;AS_VarDP=32|32|0;BaseQRankSum=-2.548;DP=67;MQRankSum=0.000;QUALapprox=803;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=-0.779;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:32,32,0:64:99:803,0,899,900,995,1895:16,16,21,11 +chrX 2165257 . G . . END=2165448 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 2165449 . G A, 718.64 . AS_QUALapprox=|726|0;AS_VarDP=25|29|0;BaseQRankSum=-1.391;DP=57;MQRankSum=0.000;QUALapprox=726;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=0.660;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:25,29,0:54:99:726,0,627,801,714,1515:8,17,11,18 +chrX 2165450 . G . . END=2165773 GT:DP:GQ:MIN_DP:PL 0/0:23:31:22:0,31,639 +chrX 2165774 . C . . END=2165774 GT:DP:GQ:MIN_DP:PL 0/0:24:3:24:0,3,665 +chrX 2165775 . C . . END=2165794 GT:DP:GQ:MIN_DP:PL 0/0:24:31:22:0,31,655 +chrX 2165795 . G . . END=2165795 GT:DP:GQ:MIN_DP:PL 0/0:22:7:22:0,7,636 +chrX 2165796 . G . . END=2165799 GT:DP:GQ:MIN_DP:PL 0/0:22:28:21:0,28,620 +chrX 2165800 . A . . END=2165801 GT:DP:GQ:MIN_DP:PL 0/0:22:17:22:0,17,616 +chrX 2165802 . C . . END=2165802 GT:DP:GQ:MIN_DP:PL 0/0:23:34:23:0,34,690 +chrX 2165803 . T . . END=2165806 GT:DP:GQ:MIN_DP:PL 0/0:24:0:24:0,0,377 +chrX 2165807 . G GTATA, 280.60 . AS_QUALapprox=|288|0;AS_VarDP=4|9|0;BaseQRankSum=-1.242;DP=21;MQRankSum=-1.050;QUALapprox=288;RAW_GT_COUNT=0,1,0;RAW_MQandDP=69810,21;ReadPosRankSum=-1.761;VarDP=13 GT:AD:DP:GQ:PL:SB 0/1:4,9,0:13:99:288,0,141,300,168,468:3,1,6,3 +chrX 2165808 . T . . END=2165867 GT:DP:GQ:MIN_DP:PL 0/0:22:38:19:0,38,485 +chrX 2165868 . C T, 0.02 . AS_QUALapprox=|1|0;AS_VarDP=22|2|0;BaseQRankSum=-0.276;DP=28;MQRankSum=-1.726;QUALapprox=1;RAW_GT_COUNT=0,1,0;RAW_MQandDP=88944,28;ReadPosRankSum=1.150;VarDP=24 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,2,0:24:1:0|1:2165868_C_T:1,0,674,67,680,747:2165868:9,13,2,0 +chrX 2165869 . G A, 0.02 . AS_QUALapprox=|1|0;AS_VarDP=22|2|0;BaseQRankSum=-0.113;DP=28;MQRankSum=-1.726;QUALapprox=1;RAW_GT_COUNT=0,1,0;RAW_MQandDP=88944,28;ReadPosRankSum=1.256;VarDP=24 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,2,0:24:1:0|1:2165868_C_T:1,0,674,67,680,747:2165868:9,13,2,0 +chrX 2165870 . T . . END=2165882 GT:DP:GQ:MIN_DP:PL 0/0:25:54:25:0,54,810 +chrX 2165883 . G . . END=2165883 GT:DP:GQ:MIN_DP:PL 0/0:20:0:20:0,0,418 +chrX 2165884 . T . . END=2165893 GT:DP:GQ:MIN_DP:PL 0/0:26:57:26:0,57,855 +chrX 2165894 . TAC T, 330.60 . AS_QUALapprox=|338|0;AS_VarDP=10|11|0;BaseQRankSum=-0.900;DP=32;MQRankSum=0.000;QUALapprox=338;RAW_GT_COUNT=0,1,0;RAW_MQandDP=107134,32;ReadPosRankSum=1.022;VarDP=21 GT:AD:DP:GQ:PL:SB 0/1:10,11,0:21:99:338,0,308,368,341,709:5,5,5,6 +chrX 2165897 . A . . END=2166055 GT:DP:GQ:MIN_DP:PL 0/0:29:24:25:0,24,700 +chrX 2166056 . C CTATA, 364.60 . AS_QUALapprox=|372|0;AS_VarDP=16|10|0;BaseQRankSum=0.033;DP=28;MQRankSum=0.000;QUALapprox=372;RAW_GT_COUNT=0,1,0;RAW_MQandDP=100800,28;ReadPosRankSum=-0.105;VarDP=26 GT:AD:DP:GQ:PL:SB 0/1:16,10,0:26:99:372,0,621,420,651,1071:10,6,8,2 +chrX 2166057 . T . . END=2166450 GT:DP:GQ:MIN_DP:PL 0/0:42:52:42:0,52,809 +chrX 2166451 . C A, 999.64 . AS_QUALapprox=|1007|0;AS_VarDP=14|28|0;BaseQRankSum=1.459;DP=45;MQRankSum=-0.976;QUALapprox=1007;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154683,45;ReadPosRankSum=0.621;VarDP=42 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:14,28,0:42:99:0|1:2166451_C_A:1007,0,425,1049,510,1559:2166451:7,7,9,19 +chrX 2166452 . T . . END=2166490 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,99,1216 +chrX 2166491 . T TAC, 978.60 . AS_QUALapprox=|986|0;AS_VarDP=16|26|0;BaseQRankSum=-0.088;DP=42;MQRankSum=0.000;QUALapprox=986;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151200,42;ReadPosRankSum=-1.591;VarDP=42 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:16,26,0:42:99:0|1:2166451_C_A:986,0,563,1034,642,1676:2166451:9,7,10,16 +chrX 2166492 . A . . END=2166496 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,114,1710 +chrX 2166497 . G . . END=2166498 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,1057 +chrX 2166499 . G . . END=2168125 GT:DP:GQ:MIN_DP:PL 0/0:57:53:57:0,53,1011 +chrX 2168126 . G . . END=2168126 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,923 +chrX 2168127 . A . . END=2169348 GT:DP:GQ:MIN_DP:PL 0/0:68:54:68:0,54,1440 +chrX 2169349 . G . . END=2169349 GT:DP:GQ:MIN_DP:PL 0/0:46:15:46:0,15,1211 +chrX 2169350 . T . . END=2169350 GT:DP:GQ:MIN_DP:PL 0/0:45:96:45:0,96,1364 +chrX 2169351 . A . . END=2169351 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,1008 +chrX 2169352 . T . . END=2169460 GT:DP:GQ:MIN_DP:PL 0/0:46:35:45:0,35,1138 +chrX 2169461 . CT C, 193.60 . AS_QUALapprox=|201|0;AS_VarDP=19|12|0;BaseQRankSum=-0.371;DP=41;MQRankSum=-1.192;QUALapprox=201;RAW_GT_COUNT=0,1,0;RAW_MQandDP=145481,41;ReadPosRankSum=-1.988;VarDP=31 GT:AD:DP:GQ:PL:SB 0/1:19,12,0:31:99:201,0,343,258,379,637:9,10,4,8 +chrX 2169463 . T . . END=2169851 GT:DP:GQ:MIN_DP:PL 0/0:54:50:54:0,50,1121 +chrX 2169852 . G . . END=2169852 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,769 +chrX 2169853 . A . . END=2169853 GT:DP:GQ:MIN_DP:PL 0/0:39:67:39:0,67,1074 +chrX 2169854 . C . . END=2169854 GT:DP:GQ:MIN_DP:PL 0/0:34:3:34:0,3,894 +chrX 2169855 . A . . END=2172067 GT:DP:GQ:MIN_DP:PL 0/0:61:75:61:0,75,1046 +chrX 2172068 . C T, 497.64 . AS_QUALapprox=|505|0;AS_VarDP=33|20|0;BaseQRankSum=-0.282;DP=60;MQRankSum=0.000;QUALapprox=505;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=0.101;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:33,20,0:53:99:505,0,944,604,1004,1608:16,17,11,9 +chrX 2172069 . C . . END=2173477 GT:DP:GQ:MIN_DP:PL 0/0:64:80:64:0,80,1270 +chrX 2173478 . A G, 983.64 . AS_QUALapprox=|991|0;AS_VarDP=32|38|0;BaseQRankSum=-0.101;DP=72;MQRankSum=0.000;QUALapprox=991;RAW_GT_COUNT=0,1,0;RAW_MQandDP=259200,72;ReadPosRankSum=-1.693;VarDP=70 GT:AD:DP:GQ:PL:SB 0/1:32,38,0:70:99:991,0,804,1086,918,2004:17,15,12,26 +chrX 2173479 . A . . END=2173816 GT:DP:GQ:MIN_DP:PL 0/0:53:72:53:0,72,1300 +chrX 2173817 . A AT, 491.60 . AS_QUALapprox=|499|0;AS_VarDP=26|21|0;BaseQRankSum=1.316;DP=52;MQRankSum=0.000;QUALapprox=499;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=0.182;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:26,21,0:47:99:499,0,652,577,715,1292:13,13,17,4 +chrX 2173818 . T . . END=2173899 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,117,1755 +chrX 2173900 . C T, 661.64 . AS_QUALapprox=|669|0;AS_VarDP=32|26|0;BaseQRankSum=1.180;DP=59;MQRankSum=0.000;QUALapprox=669;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=1.736;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:32,26,0:58:99:669,0,816,766,894,1660:14,18,16,10 +chrX 2173901 . G . . END=2174459 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1724 +chrX 2174460 . C G, 724.64 . AS_QUALapprox=|732|0;AS_VarDP=23|29|0;BaseQRankSum=-0.513;DP=54;MQRankSum=0.000;QUALapprox=732;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=0.645;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:23,29,0:52:99:732,0,583,801,670,1471:11,12,18,11 +chrX 2174461 . A . . END=2174580 GT:DP:GQ:MIN_DP:PL 0/0:56:93:56:0,93,1405 +chrX 2174581 . TTTTTTG T, 643.60 . AS_QUALapprox=|651|0;AS_VarDP=21|18|0;BaseQRankSum=1.349;DP=51;MQRankSum=-0.716;QUALapprox=651;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172436,51;ReadPosRankSum=1.142;VarDP=39 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,18,0:39:99:0|1:2174581_TTTTTTG_T:651,0,756,714,811,1525:2174581:8,13,4,14 +chrX 2174588 . T . . END=2174601 GT:DP:GQ:MIN_DP:PL 0/0:53:84:53:0,84,1260 +chrX 2174602 . G . . END=2174602 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,909 +chrX 2174603 . T . . END=2174603 GT:DP:GQ:MIN_DP:PL 0/0:48:87:48:0,87,1305 +chrX 2174604 . A . . END=2174604 GT:DP:GQ:MIN_DP:PL 0/0:46:4:46:0,4,1140 +chrX 2174605 . T . . END=2175100 GT:DP:GQ:MIN_DP:PL 0/0:32:48:28:0,48,945 +chrX 2175101 . C A, 322.64 . AS_QUALapprox=|330|0;AS_VarDP=13|13|0;BaseQRankSum=0.043;DP=27;MQRankSum=1.077;QUALapprox=330;RAW_GT_COUNT=0,1,0;RAW_MQandDP=96100,27;ReadPosRankSum=-1.226;VarDP=26 GT:AD:DP:GQ:PL:SB 0/1:13,13,0:26:99:330,0,337,369,376,744:10,3,9,4 +chrX 2175102 . C . . END=2175127 GT:DP:GQ:MIN_DP:PL 0/0:25:36:25:0,36,684 +chrX 2175128 . TA T, 60.60 . AS_QUALapprox=|68|0;AS_VarDP=17|7|0;BaseQRankSum=-1.118;DP=34;MQRankSum=0.448;QUALapprox=68;RAW_GT_COUNT=0,1,0;RAW_MQandDP=112136,34;ReadPosRankSum=-1.457;VarDP=24 GT:AD:DP:GQ:PL:SB 0/1:17,7,0:24:68:68,0,256,118,277,395:10,7,4,3 +chrX 2175130 . A . . END=2175248 GT:DP:GQ:MIN_DP:PL 0/0:51:84:51:0,84,1196 +chrX 2175249 . T C, 799.64 . AS_QUALapprox=|807|0;AS_VarDP=27|31|0;BaseQRankSum=-1.843;DP=58;MQRankSum=0.000;QUALapprox=807;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=1.131;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:27,31,0:58:99:807,0,745,888,837,1725:14,13,15,16 +chrX 2175250 . G . . END=2175519 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,116,1738 +chrX 2175520 . T C, 719.64 . AS_QUALapprox=|727|0;AS_VarDP=33|29|0;BaseQRankSum=0.456;DP=65;MQRankSum=0.000;QUALapprox=727;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=0.367;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:33,29,0:62:99:727,0,836,826,923,1749:18,15,18,11 +chrX 2175521 . A . . END=2175574 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 2175575 . T C, 775.64 . AS_QUALapprox=|783|0;AS_VarDP=32|30|0;BaseQRankSum=1.525;DP=64;MQRankSum=0.000;QUALapprox=783;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=0.162;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:32,30,0:62:99:783,0,762,878,852,1729:19,13,15,15 +chrX 2175576 . G . . END=2176250 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,101,1410 +chrX 2176251 . C T, 844.64 . AS_QUALapprox=|852|0;AS_VarDP=33|31|0;BaseQRankSum=2.831;DP=66;MQRankSum=0.000;QUALapprox=852;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=0.101;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:33,31,0:64:99:852,0,776,949,869,1818:15,18,17,14 +chrX 2176252 . G . . END=2176433 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 2176434 . A G, 1021.64 . AS_QUALapprox=|1029|0;AS_VarDP=24|38|0;BaseQRankSum=0.068;DP=64;MQRankSum=0.000;QUALapprox=1029;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=0.267;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:24,38,0:62:99:1029,0,588,1101,702,1803:14,10,19,19 +chrX 2176435 . C . . END=2177301 GT:DP:GQ:MIN_DP:PL 0/0:63:96:63:0,96,1345 +chrX 2177302 . C T, 834.64 . AS_QUALapprox=|842|0;AS_VarDP=23|30|0;BaseQRankSum=-1.081;DP=55;MQRankSum=0.000;QUALapprox=842;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-1.427;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:23,30,0:53:99:842,0,628,911,718,1629:9,14,14,16 +chrX 2177303 . C . . END=2177499 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 2177500 . T G, 907.64 . AS_QUALapprox=|915|0;AS_VarDP=30|33|0;BaseQRankSum=1.747;DP=63;MQRankSum=0.000;QUALapprox=915;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=0.998;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:30,33,0:63:99:915,0,763,1005,862,1867:19,11,21,12 +chrX 2177501 . G . . END=2177890 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 2177891 . T C, 1122.64 . AS_QUALapprox=|1130|0;AS_VarDP=33|39|0;BaseQRankSum=3.920;DP=75;MQRankSum=1.568;QUALapprox=1130;RAW_GT_COUNT=0,1,0;RAW_MQandDP=266328,75;ReadPosRankSum=0.220;VarDP=72 GT:AD:DP:GQ:PL:SB 0/1:33,39,0:72:99:1130,0,771,1229,888,2117:15,18,14,25 +chrX 2177892 . T . . END=2177958 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 2177959 . G T, 1047.64 . AS_QUALapprox=|1055|0;AS_VarDP=26|27|0;BaseQRankSum=0.078;DP=55;MQRankSum=1.482;QUALapprox=1055;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194328,55;ReadPosRankSum=0.846;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,27,0:53:99:0|1:2177959_G_T:1055,0,1000,1133,1081,2214:2177959:11,15,14,13 +chrX 2177960 . C . . END=2177960 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 2177961 . C A, 1047.64 . AS_QUALapprox=|1055|0;AS_VarDP=26|27|0;BaseQRankSum=-0.334;DP=53;MQRankSum=1.482;QUALapprox=1055;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187128,53;ReadPosRankSum=0.863;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,27,0:53:99:0|1:2177959_G_T:1055,0,1000,1133,1081,2214:2177959:11,15,14,13 +chrX 2177962 . A . . END=2178642 GT:DP:GQ:MIN_DP:PL 0/0:54:64:54:0,64,993 +chrX 2178643 . G . . END=2178644 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,968 +chrX 2178645 . A . . END=2178645 GT:DP:GQ:MIN_DP:PL 0/0:43:94:43:0,94,1315 +chrX 2178646 . G . . END=2178647 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,868 +chrX 2178648 . TAC T,TCCACACAC, 919.02 . AS_QUALapprox=|214|696|0;AS_VarDP=0|9|21|0;DP=40;QUALapprox=936;RAW_GT_COUNT=0,0,1;RAW_MQandDP=142000,40;VarDP=30 GT:AD:DP:GQ:PL:SB 1/2:0,9,21,0:30:99:936,728,722,240,0,587,990,768,467,1182:0,0,10,20 +chrX 2178651 . A . . END=2178695 GT:DP:GQ:MIN_DP:PL 0/0:41:60:41:0,60,900 +chrX 2178696 . T C, 520.64 . AS_QUALapprox=|528|0;AS_VarDP=23|16|0;BaseQRankSum=0.402;DP=41;MQRankSum=-1.681;QUALapprox=528;RAW_GT_COUNT=0,1,0;RAW_MQandDP=143600,41;ReadPosRankSum=0.911;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:23,16,0:39:99:528,0,747,598,793,1391:8,15,5,11 +chrX 2178697 . C . . END=2178817 GT:DP:GQ:MIN_DP:PL 0/0:51:81:51:0,81,1312 +chrX 2178818 . CT C, 337.60 . AS_QUALapprox=|345|0;AS_VarDP=21|18|0;BaseQRankSum=-2.471;DP=47;MQRankSum=0.000;QUALapprox=345;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=0.614;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:21,18,0:39:99:345,0,443,408,497,905:16,5,10,8 +chrX 2178820 . T . . END=2179337 GT:DP:GQ:MIN_DP:PL 0/0:53:43:53:0,43,1270 +chrX 2179338 . A G, 918.64 . AS_QUALapprox=|926|0;AS_VarDP=28|34|0;BaseQRankSum=0.230;DP=65;MQRankSum=0.000;QUALapprox=926;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=-0.587;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:28,34,0:62:99:926,0,697,1009,800,1809:18,10,17,17 +chrX 2179339 . T . . END=2179393 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 2179394 . A G, 642.64 . AS_QUALapprox=|650|0;AS_VarDP=33|25|0;BaseQRankSum=1.806;DP=58;MQRankSum=0.000;QUALapprox=650;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-0.346;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:33,25,0:58:99:650,0,839,748,913,1661:19,14,12,13 +chrX 2179395 . T . . END=2179568 GT:DP:GQ:MIN_DP:PL 0/0:48:83:48:0,83,1235 +chrX 2179569 . G A, 379.64 . AS_QUALapprox=|387|0;AS_VarDP=23|15|0;BaseQRankSum=0.355;DP=40;MQRankSum=0.000;QUALapprox=387;RAW_GT_COUNT=0,1,0;RAW_MQandDP=144000,40;ReadPosRankSum=0.418;VarDP=38 GT:AD:DP:GQ:PL:SB 0/1:23,15,0:38:99:387,0,645,456,690,1147:8,15,4,11 +chrX 2179570 . T . . END=2180203 GT:DP:GQ:MIN_DP:PL 0/0:56:55:56:0,55,1101 +chrX 2180204 . T C, 568.64 . AS_QUALapprox=|576|0;AS_VarDP=30|23|0;BaseQRankSum=-1.527;DP=55;MQRankSum=0.000;QUALapprox=576;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=1.284;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:30,23,0:53:99:576,0,878,666,946,1612:13,17,14,9 +chrX 2180205 . A . . END=2180712 GT:DP:GQ:MIN_DP:PL 0/0:64:76:64:0,76,1800 +chrX 2180713 . C CTCTATCTA,CTCTATCTATCTA, 361.01 . AS_QUALapprox=|546|0|0;AS_VarDP=29|22|0|0;BaseQRankSum=1.600;DP=71;MQRankSum=0.000;QUALapprox=546;RAW_GT_COUNT=0,1,0;RAW_MQandDP=255600,71;ReadPosRankSum=1.460;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:29,22,0,0:51:99:546,0,1064,692,1134,2062,657,1131,1917,1875:7,21,4,6 +chrX 2180714 . T . . END=2180744 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 2180745 . A . . END=2180747 GT:DP:GQ:MIN_DP:PL 0/0:62:6:62:0,6,1607 +chrX 2180748 . G T, 979.03 . AS_QUALapprox=|1013|0;AS_VarDP=30|28|0;BaseQRankSum=2.211;DP=63;MQRankSum=0.000;QUALapprox=1013;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=1.194;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:30,28,0:58:99:1013,0,1065,1041,1153,2203:7,23,11,12 +chrX 2180749 . A . . END=2180853 GT:DP:GQ:MIN_DP:PL 0/0:59:27:57:0,27,1502 +chrX 2180854 . GTATC G, 659.60 . AS_QUALapprox=|667|0;AS_VarDP=28|18|0;BaseQRankSum=-0.734;DP=53;MQRankSum=0.000;QUALapprox=667;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=-1.565;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,18,0:46:99:0|1:2180854_GTATC_G:667,0,1104,751,1158,1909:2180854:16,12,13,5 +chrX 2180859 . T . . END=2180883 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 2180884 . T TCTGC, 841.60 . AS_QUALapprox=|849|0;AS_VarDP=32|23|0;BaseQRankSum=-0.044;DP=57;MQRankSum=0.000;QUALapprox=849;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-0.367;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:32,23,0:55:99:0|1:2180854_GTATC_G:849,0,1264,945,1333,2279:2180854:18,14,13,10 +chrX 2180885 . C . . END=2180925 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 2180926 . C CT, 887.60 . AS_QUALapprox=|895|0;AS_VarDP=34|24|0;BaseQRankSum=1.472;DP=59;MQRankSum=0.000;QUALapprox=895;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=2.448;VarDP=58 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:34,24,0:58:99:0|1:2180926_C_CT:895,0,1304,997,1377,2374:2180926:24,10,14,10 +chrX 2180927 . A . . END=2180927 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 2180928 . T TCAC, 909.60 . AS_QUALapprox=|917|0;AS_VarDP=34|25|0;BaseQRankSum=0.309;DP=64;MQRankSum=0.000;QUALapprox=917;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=2.164;VarDP=59 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:34,25,0:59:99:0|1:2180926_C_CT:917,0,1302,1019,1377,2396:2180926:24,10,14,11 +chrX 2180929 . G . . END=2181151 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 2181152 . A G, 727.64 . AS_QUALapprox=|735|0;AS_VarDP=41|30|0;BaseQRankSum=-0.697;DP=73;MQRankSum=0.000;QUALapprox=735;RAW_GT_COUNT=0,1,0;RAW_MQandDP=262800,73;ReadPosRankSum=0.961;VarDP=71 GT:AD:DP:GQ:PL:SB 0/1:41,30,0:71:99:735,0,1127,858,1216,2074:23,18,18,12 +chrX 2181153 . T . . END=2181247 GT:DP:GQ:MIN_DP:PL 0/0:79:99:79:0,120,1800 +chrX 2181248 . AT A, 651.60 . AS_QUALapprox=|659|0;AS_VarDP=37|31|0;BaseQRankSum=-0.283;DP=85;MQRankSum=0.000;QUALapprox=659;RAW_GT_COUNT=0,1,0;RAW_MQandDP=306000,85;ReadPosRankSum=-0.681;VarDP=68 GT:AD:DP:GQ:PL:SB 0/1:37,31,0:68:99:659,0,812,769,905,1674:22,15,22,9 +chrX 2181250 . T . . END=2181647 GT:DP:GQ:MIN_DP:PL 0/0:78:70:78:0,70,1800 +chrX 2181648 . CATCT C, 1009.60 . AS_QUALapprox=|1017|0;AS_VarDP=25|26|0;BaseQRankSum=-0.355;DP=57;MQRankSum=0.000;QUALapprox=1017;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=1.564;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:25,26,0:51:99:1017,0,966,1092,1045,2137:12,13,15,11 +chrX 2181653 . A . . END=2182364 GT:DP:GQ:MIN_DP:PL 0/0:55:97:55:0,97,1419 +chrX 2182365 . G C, 691.64 . AS_QUALapprox=|699|0;AS_VarDP=32|27|0;BaseQRankSum=-0.971;DP=61;MQRankSum=0.000;QUALapprox=699;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-0.297;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:32,27,0:59:99:699,0,891,795,972,1768:16,16,17,10 +chrX 2182366 . G . . END=2182637 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,111,1665 +chrX 2182638 . G A, 607.64 . AS_QUALapprox=|615|0;AS_VarDP=25|23|0;BaseQRankSum=-0.955;DP=49;MQRankSum=0.000;QUALapprox=615;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=0.992;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:25,23,0:48:99:615,0,702,690,771,1461:13,12,11,12 +chrX 2182639 . A . . END=2183112 GT:DP:GQ:MIN_DP:PL 0/0:53:78:53:0,78,1480 +chrX 2183113 . A G, 627.64 . AS_QUALapprox=|635|0;AS_VarDP=26|24|0;BaseQRankSum=1.264;DP=54;MQRankSum=-1.001;QUALapprox=635;RAW_GT_COUNT=0,1,0;RAW_MQandDP=191529,54;ReadPosRankSum=0.505;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:26,24,0:50:99:635,0,679,766,810,1837:17,9,13,11 +chrX 2183114 . G . . END=2183672 GT:DP:GQ:MIN_DP:PL 0/0:63:52:63:0,52,1319 +chrX 2183673 . T C, 801.64 . AS_QUALapprox=|809|0;AS_VarDP=28|30|0;BaseQRankSum=0.210;DP=64;MQRankSum=0.000;QUALapprox=809;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=-0.304;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:28,30,0:58:99:809,0,724,892,814,1707:12,16,15,15 +chrX 2183674 . G . . END=2183832 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 2183833 . T C, 1494.06 . AS_QUALapprox=|1508|0;AS_VarDP=0|46|0;DP=48;QUALapprox=1508;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1508,138,0,1508,138,1508:0,0,27,19 +chrX 2183834 . T . . END=2184025 GT:DP:GQ:MIN_DP:PL 0/0:43:73:43:0,73,1034 +chrX 2184026 . C G, 648.64 . AS_QUALapprox=|656|0;AS_VarDP=20|26|0;BaseQRankSum=-1.713;DP=47;MQRankSum=0.000;QUALapprox=656;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=2.051;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:20,26,0:46:99:656,0,538,716,615,1331:13,7,9,17 +chrX 2184027 . C . . END=2184579 GT:DP:GQ:MIN_DP:PL 0/0:54:47:54:0,47,1116 +chrX 2184580 . A C, 1605.06 . AS_QUALapprox=|1619|0;AS_VarDP=0|45|0;DP=47;QUALapprox=1619;RAW_GT_COUNT=0,0,1;RAW_MQandDP=166329,47;VarDP=45 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,45,0:45:99:0|1:2184580_A_C:1619,135,0,1619,135,1619:2184580:0,0,18,27 +chrX 2184581 . A . . END=2184628 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,109,1339 +chrX 2184629 . CT C, 706.60 . AS_QUALapprox=|714|0;AS_VarDP=28|19|0;BaseQRankSum=2.196;DP=49;MQRankSum=0.000;QUALapprox=714;RAW_GT_COUNT=0,1,0;RAW_MQandDP=173476,49;ReadPosRankSum=-0.759;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,19,0:47:99:0|1:2184580_A_C:714,0,1077,798,1134,1932:2184580:14,14,7,12 +chrX 2184631 . A C, 706.64 . AS_QUALapprox=|714|0;AS_VarDP=28|19|0;BaseQRankSum=2.011;DP=47;MQRankSum=0.000;QUALapprox=714;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=-0.694;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,19,0:47:99:0|1:2184580_A_C:714,0,1077,798,1134,1932:2184580:14,14,7,12 +chrX 2184632 . A . . END=2184792 GT:DP:GQ:MIN_DP:PL 0/0:61:73:61:0,73,1418 +chrX 2184793 . CATCTATCTATCT C, 795.60 . AS_QUALapprox=|803|0;AS_VarDP=23|22|0;BaseQRankSum=-1.013;DP=57;MQRankSum=0.000;QUALapprox=803;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=0.267;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:23,22,0:45:99:803,0,878,872,945,1817:13,10,13,9 +chrX 2184806 . A . . END=2184845 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,111,1665 +chrX 2184846 . TTCTA T,TTCTATCTA, 390.60 . AS_QUALapprox=|398|0|0;AS_VarDP=15|11|0|0;BaseQRankSum=-0.826;DP=48;MQRankSum=0.000;QUALapprox=398;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=-0.164;VarDP=26 GT:AD:DP:GQ:PL:SB 0/1:15,11,0,0:26:99:398,0,738,440,625,1099,455,706,1095,1163:10,5,5,6 +chrX 2184851 . T . . END=2184888 GT:DP:GQ:MIN_DP:PL 0/0:47:81:47:0,81,1215 +chrX 2184889 . T C,TATCC,TATCTATCC, 835.60 . AS_QUALapprox=|238|246|843|0;AS_VarDP=18|0|0|14|0;BaseQRankSum=0.414;DP=50;MQRankSum=0.000;QUALapprox=843;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=1.845;VarDP=32 GT:AD:DP:GQ:PL:SB 0/3:18,0,0,14,0:32:99:843,605,1398,597,1363,1381,0,666,698,653,609,1372,1385,701,1394:10,8,10,4 +chrX 2184890 . A . . END=2184949 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 2184950 . A T, 654.64 . AS_QUALapprox=|662|0;AS_VarDP=30|24|0;BaseQRankSum=1.455;DP=57;MQRankSum=0.000;QUALapprox=662;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-0.052;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:30,24,0:54:99:662,0,830,752,903,1655:17,13,12,12 +chrX 2184951 . G . . END=2185176 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 2185177 . T TTCTA, 1065.60 . AS_QUALapprox=|1073|0;AS_VarDP=34|28|0;BaseQRankSum=2.452;DP=67;MQRankSum=0.000;QUALapprox=1073;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=-0.382;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:34,28,0:62:99:1073,0,1323,1176,1408,2583:16,18,12,16 +chrX 2185178 . T . . END=2185663 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,111,1800 +chrX 2185664 . G A, 947.64 . AS_QUALapprox=|955|0;AS_VarDP=32|35|0;BaseQRankSum=-0.039;DP=69;MQRankSum=0.000;QUALapprox=955;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=0.396;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:32,35,0:67:99:955,0,831,1050,937,1987:13,19,19,16 +chrX 2185665 . T . . END=2185922 GT:DP:GQ:MIN_DP:PL 0/0:55:24:54:0,24,1279 +chrX 2185923 . A C, 663.64 . AS_QUALapprox=|671|0;AS_VarDP=24|26|0;BaseQRankSum=0.443;DP=52;MQRankSum=0.943;QUALapprox=671;RAW_GT_COUNT=0,1,0;RAW_MQandDP=170786,52;ReadPosRankSum=-0.146;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,26,0:50:99:0|1:2185923_A_C:671,0,636,742,713,1455:2185923:12,12,14,12 +chrX 2185924 . A . . END=2186078 GT:DP:GQ:MIN_DP:PL 0/0:50:44:43:0,44,1128 +chrX 2186079 . T C, 646.64 . AS_QUALapprox=|654|0;AS_VarDP=20|17|0;BaseQRankSum=0.360;DP=38;MQRankSum=-1.030;QUALapprox=654;RAW_GT_COUNT=0,1,0;RAW_MQandDP=134018,38;ReadPosRankSum=0.747;VarDP=37 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:20,17,0:37:99:0|1:2186079_T_C:654,0,768,714,819,1533:2186079:11,9,6,11 +chrX 2186080 . G . . END=2186083 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,105,1197 +chrX 2186084 . T TCA, 677.60 . AS_QUALapprox=|685|0;AS_VarDP=20|18|0;BaseQRankSum=-0.040;DP=38;MQRankSum=-1.001;QUALapprox=685;RAW_GT_COUNT=0,1,0;RAW_MQandDP=135409,38;ReadPosRankSum=0.666;VarDP=38 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:20,18,0:38:99:0|1:2186079_T_C:685,0,786,745,840,1585:2186079:11,9,6,12 +chrX 2186085 . AGG A, 674.60 . AS_QUALapprox=|682|0;AS_VarDP=21|18|0;BaseQRankSum=1.398;DP=41;MQRankSum=-1.029;QUALapprox=682;RAW_GT_COUNT=0,1,0;RAW_MQandDP=146209,41;ReadPosRankSum=0.614;VarDP=39 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,18,0:39:99:0|1:2186079_T_C:682,0,807,745,862,1607:2186079:11,10,6,12 +chrX 2186088 . T . . END=2186200 GT:DP:GQ:MIN_DP:PL 0/0:49:82:49:0,82,1308 +chrX 2186201 . G . . END=2186202 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,932 +chrX 2186203 . C . . END=2186342 GT:DP:GQ:MIN_DP:PL 0/0:58:45:58:0,45,1399 +chrX 2186343 . T A, 483.64 . AS_QUALapprox=|491|0;AS_VarDP=22|21|0;BaseQRankSum=-2.434;DP=46;MQRankSum=0.233;QUALapprox=491;RAW_GT_COUNT=0,1,0;RAW_MQandDP=149801,46;ReadPosRankSum=0.302;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:22,21,0:43:99:491,0,724,556,786,1343:12,10,10,11 +chrX 2186344 . C . . END=2186366 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,104,1345 +chrX 2186367 . C G, 285.64 . AS_QUALapprox=|293|0;AS_VarDP=42|11|0;BaseQRankSum=0.597;DP=55;MQRankSum=-0.728;QUALapprox=293;RAW_GT_COUNT=0,1,0;RAW_MQandDP=170352,55;ReadPosRankSum=0.258;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:42,11,0:53:99:0|1:2186367_C_G:293,0,1710,420,1743,2163:2186367:25,17,6,5 +chrX 2186368 . G . . END=2186369 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 2186370 . T C, 1843.53 . AS_QUALapprox=|1857|0;AS_VarDP=5|48|0;BaseQRankSum=0.175;DP=54;MQRankSum=0.422;QUALapprox=1857;RAW_GT_COUNT=0,0,1;RAW_MQandDP=168327,54;ReadPosRankSum=1.537;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:5,48,0:53:10:1857,10,0,1871,144,2005:3,2,28,20 +chrX 2186371 . T . . END=2186397 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 2186398 . C A, 127.64 . AS_QUALapprox=|135|0;AS_VarDP=63|8|0;BaseQRankSum=0.559;DP=72;MQRankSum=-1.826;QUALapprox=135;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230423,72;ReadPosRankSum=0.212;VarDP=71 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:63,8,0:71:99:0|1:2186367_C_G:135,0,2620,324,2644,2969:2186367:37,26,5,3 +chrX 2186399 . G . . END=2186408 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 2186409 . A G, 47.64 . AS_QUALapprox=|55|0;AS_VarDP=65|6|0;BaseQRankSum=-1.067;DP=75;MQRankSum=-1.668;QUALapprox=55;RAW_GT_COUNT=0,1,0;RAW_MQandDP=242163,75;ReadPosRankSum=0.210;VarDP=71 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:65,6,0:71:55:0|1:2186367_C_G:55,0,2684,251,2702,2953:2186367:37,28,5,1 +chrX 2186410 . C . . END=2186414 GT:DP:GQ:MIN_DP:PL 0/0:74:99:74:0,120,1800 +chrX 2186415 . G A, 33.64 . AS_QUALapprox=|41|0;AS_VarDP=70|6|0;BaseQRankSum=-1.169;DP=82;MQRankSum=-1.712;QUALapprox=41;RAW_GT_COUNT=0,1,0;RAW_MQandDP=266679,82;ReadPosRankSum=-0.337;VarDP=76 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:70,6,0:76:41:0|1:2186367_C_G:41,0,2859,251,2877,3128:2186367:37,33,5,1 +chrX 2186416 . G A, 29.64 . AS_QUALapprox=|37|0;AS_VarDP=71|6|0;BaseQRankSum=-2.468;DP=83;MQRankSum=-1.669;QUALapprox=37;RAW_GT_COUNT=0,1,0;RAW_MQandDP=269383,83;ReadPosRankSum=-0.371;VarDP=77 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:71,6,0:77:37:0|1:2186367_C_G:37,0,2901,251,2919,3170:2186367:37,34,5,1 +chrX 2186417 . T . . END=2186430 GT:DP:GQ:MIN_DP:PL 0/0:78:99:78:0,120,1800 +chrX 2186431 . C A, 550.64 . AS_QUALapprox=|558|0;AS_VarDP=57|23|0;BaseQRankSum=-1.289;DP=82;MQRankSum=-0.495;QUALapprox=558;RAW_GT_COUNT=0,1,0;RAW_MQandDP=267363,82;ReadPosRankSum=0.819;VarDP=80 GT:AD:DP:GQ:PL:SB 0/1:57,23,0:80:99:558,0,1693,728,1762,2490:31,26,11,12 +chrX 2186432 . C . . END=2186495 GT:DP:GQ:MIN_DP:PL 0/0:85:99:85:0,120,1800 +chrX 2186496 . T C, 1.22 . AS_QUALapprox=|8|0;AS_VarDP=75|10|0;BaseQRankSum=-1.782;DP=86;MQRankSum=-4.846;QUALapprox=8;RAW_GT_COUNT=0,1,0;RAW_MQandDP=288780,86;ReadPosRankSum=-1.862;VarDP=85 GT:AD:DP:GQ:PL:SB 0/1:75,10,0:85:8:8,0,2337,233,2366,2599:36,39,10,0 +chrX 2186497 . G . . END=2186499 GT:DP:GQ:MIN_DP:PL 0/0:84:99:84:0,120,1800 +chrX 2186500 . G A, 337.64 . AS_QUALapprox=|345|0;AS_VarDP=68|18|0;BaseQRankSum=2.442;DP=86;MQRankSum=-0.784;QUALapprox=345;RAW_GT_COUNT=0,1,0;RAW_MQandDP=288780,86;ReadPosRankSum=-1.188;VarDP=86 GT:AD:DP:GQ:PL:SB 0/1:68,18,0:86:99:345,0,2288,548,2342,2891:40,28,6,12 +chrX 2186501 . G . . END=2186547 GT:DP:GQ:MIN_DP:PL 0/0:86:70:86:0,70,1800 +chrX 2186548 . A . . END=2186597 GT:DP:GQ:MIN_DP:PL 0/0:80:0:80:0,0,0 +chrX 2186598 . G A, 642.64 . AS_QUALapprox=|650|0;AS_VarDP=25|29|0;BaseQRankSum=1.406;DP=92;MQRankSum=-0.528;QUALapprox=650;RAW_GT_COUNT=0,1,0;RAW_MQandDP=291944,92;ReadPosRankSum=0.331;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:25,29,0:54:99:650,0,472,782,609,1711:9,15,13,15 +chrX 2186599 . G . . END=2186619 GT:DP:GQ:MIN_DP:PL 0/0:85:0:85:0,0,57 +chrX 2186620 . A G, 224.64 . AS_QUALapprox=|232|0;AS_VarDP=33|14|0;BaseQRankSum=1.393;DP=86;MQRankSum=-1.955;QUALapprox=232;RAW_GT_COUNT=0,1,0;RAW_MQandDP=265761,86;ReadPosRankSum=0.925;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:33,14,0:47:99:232,0,844,356,955,1552:14,19,6,6 +chrX 2186621 . G . . END=2186657 GT:DP:GQ:MIN_DP:PL 0/0:80:0:80:0,0,0 +chrX 2186658 . T . . END=2186701 GT:DP:GQ:MIN_DP:PL 0/0:32:40:32:0,40,759 +chrX 2186702 . A . . END=2186703 GT:DP:GQ:MIN_DP:PL 0/0:25:0:25:0,0,605 +chrX 2186704 . T . . END=2186717 GT:DP:GQ:MIN_DP:PL 0/0:25:44:25:0,44,638 +chrX 2186718 . C . . END=2186718 GT:DP:GQ:MIN_DP:PL 0/0:24:13:24:0,13,665 +chrX 2186719 . C . . END=2186734 GT:DP:GQ:MIN_DP:PL 0/0:27:40:27:0,40,683 +chrX 2186735 . A . . END=2186735 GT:DP:GQ:MIN_DP:PL 0/0:28:10:28:0,10,725 +chrX 2186736 . C . . END=2186759 GT:DP:GQ:MIN_DP:PL 0/0:33:43:33:0,43,764 +chrX 2186760 . T . . END=2186760 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,259 +chrX 2186761 . C . . END=2186768 GT:DP:GQ:MIN_DP:PL 0/0:38:76:38:0,76,1026 +chrX 2186769 . G . . END=2186769 GT:DP:GQ:MIN_DP:PL 0/0:40:11:40:0,11,1033 +chrX 2186770 . T . . END=2186824 GT:DP:GQ:MIN_DP:PL 0/0:46:74:46:0,74,977 +chrX 2186825 . T . . END=2186825 GT:DP:GQ:MIN_DP:PL 0/0:46:4:46:0,4,1029 +chrX 2186826 . G . . END=2186882 GT:DP:GQ:MIN_DP:PL 0/0:47:31:36:0,31,788 +chrX 2186883 . C . . END=2186883 GT:DP:GQ:MIN_DP:PL 0/0:22:0:22:0,0,426 +chrX 2186884 . C . . END=2186886 GT:DP:GQ:MIN_DP:PL 0/0:24:34:23:0,34,619 +chrX 2186887 . G . . END=2186887 GT:DP:GQ:MIN_DP:PL 0/0:25:16:25:0,16,660 +chrX 2186888 . G . . END=2186924 GT:DP:GQ:MIN_DP:PL 0/0:31:40:31:0,40,759 +chrX 2186925 . T . . END=2186925 GT:DP:GQ:MIN_DP:PL 0/0:24:0:24:0,0,556 +chrX 2186926 . C . . END=2186933 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,102,965 +chrX 2186934 . G . . END=2186934 GT:DP:GQ:MIN_DP:PL 0/0:25:0:25:0,0,472 +chrX 2186935 . T . . END=2186941 GT:DP:GQ:MIN_DP:PL 0/0:37:86:37:0,86,941 +chrX 2186942 . C . . END=2186942 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,714 +chrX 2186943 . C . . END=2186949 GT:DP:GQ:MIN_DP:PL 0/0:37:80:37:0,80,758 +chrX 2186950 . G . . END=2186951 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,528 +chrX 2186952 . T . . END=2187047 GT:DP:GQ:MIN_DP:PL 0/0:26:24:24:0,24,656 +chrX 2187048 . T . . END=2187048 GT:DP:GQ:MIN_DP:PL 0/0:21:0:21:0,0,195 +chrX 2187049 . C . . END=2187050 GT:DP:GQ:MIN_DP:PL 0/0:20:51:20:0,51,765 +chrX 2187051 . G . . END=2187051 GT:DP:GQ:MIN_DP:PL 0/0:19:0:19:0,0,243 +chrX 2187052 . G . . END=2187107 GT:DP:GQ:MIN_DP:PL 0/0:19:22:16:0,22,450 +chrX 2187108 . C . . END=2187108 GT:DP:GQ:MIN_DP:PL 0/0:22:0:22:0,0,527 +chrX 2187109 . G . . END=2187138 GT:DP:GQ:MIN_DP:PL 0/0:28:40:28:0,40,590 +chrX 2187139 . C . . END=2187139 GT:DP:GQ:MIN_DP:PL 0/0:23:0:23:0,0,412 +chrX 2187140 . G . . END=2187179 GT:DP:GQ:MIN_DP:PL 0/0:32:27:32:0,27,750 +chrX 2187180 . C . . END=2187180 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,442 +chrX 2187181 . G . . END=2187192 GT:DP:GQ:MIN_DP:PL 0/0:32:82:32:0,82,902 +chrX 2187193 . C . . END=2187193 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,709 +chrX 2187194 . T . . END=2187231 GT:DP:GQ:MIN_DP:PL 0/0:33:25:32:0,25,788 +chrX 2187232 . G . . END=2187232 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,511 +chrX 2187233 . C . . END=2187303 GT:DP:GQ:MIN_DP:PL 0/0:25:20:20:0,20,606 +chrX 2187304 . A . . END=2187304 GT:DP:GQ:MIN_DP:PL 0/0:26:14:26:0,14,664 +chrX 2187305 . T . . END=2187354 GT:DP:GQ:MIN_DP:PL 0/0:33:25:27:0,25,874 +chrX 2187355 . G *,A, 653.21 . AS_QUALapprox=|0|669|0;AS_VarDP=1|2|22|0;BaseQRankSum=1.779;DP=26;MQRankSum=0.000;QUALapprox=669;RAW_GT_COUNT=0,0,1;RAW_MQandDP=89866,26;ReadPosRankSum=0.278;VarDP=25 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 2|2:1,2,22,0:25:1:1|0:2187319_TGGTGGAAGGTACCATTTCCGGGCAAGTGGGTCACCGCCTTCAATGGAAGGTACCATTGCCGGGAAAATGGGTCACTGCCTTG_T:669,659,923,44,1,0,714,822,69,846:2187319:0,1,14,10 +chrX 2187356 . C . . END=2187387 GT:DP:GQ:MIN_DP:PL 0/0:27:0:27:0,0,661 +chrX 2187388 . G . . END=2187393 GT:DP:GQ:MIN_DP:PL 0/0:30:20:30:0,20,843 +chrX 2187394 . C . . END=2187396 GT:DP:GQ:MIN_DP:PL 0/0:29:15:29:0,15,814 +chrX 2187397 . C . . END=2187398 GT:DP:GQ:MIN_DP:PL 0/0:30:21:30:0,21,854 +chrX 2187399 . T . . END=2187399 GT:DP:GQ:MIN_DP:PL 0/0:29:18:29:0,18,829 +chrX 2187400 . T . . END=2187400 GT:DP:GQ:MIN_DP:PL 0/0:30:21:30:0,21,863 +chrX 2187401 . G . . END=2187401 GT:DP:GQ:MIN_DP:PL 0/0:29:17:29:0,17,808 +chrX 2187402 . G . . END=2187542 GT:DP:GQ:MIN_DP:PL 0/0:51:41:51:0,41,1354 +chrX 2187543 . C G, 709.64 . AS_QUALapprox=|717|0;AS_VarDP=27|28|0;BaseQRankSum=-0.627;DP=57;MQRankSum=-0.972;QUALapprox=717;RAW_GT_COUNT=0,1,0;RAW_MQandDP=199336,57;ReadPosRankSum=-0.792;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:27,28,0:55:99:717,0,719,797,802,1600:16,11,15,13 +chrX 2187544 . G . . END=2187695 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,103,1627 +chrX 2187696 . T A, 624.64 . AS_QUALapprox=|632|0;AS_VarDP=24|23|0;BaseQRankSum=-0.022;DP=47;MQRankSum=0.000;QUALapprox=632;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=-1.469;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:24,23,0:47:99:632,0,671,704,740,1445:7,17,9,14 +chrX 2187697 . A . . END=2187900 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,119,1653 +chrX 2187901 . C T, 679.64 . AS_QUALapprox=|687|0;AS_VarDP=29|25|0;BaseQRankSum=1.585;DP=57;MQRankSum=0.000;QUALapprox=687;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=0.720;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:29,25,0:54:99:687,0,775,774,850,1624:17,12,12,13 +chrX 2187902 . C . . END=2189164 GT:DP:GQ:MIN_DP:PL 0/0:60:84:60:0,84,1617 +chrX 2189165 . G C, 920.64 . AS_QUALapprox=|928|0;AS_VarDP=23|35|0;BaseQRankSum=-0.511;DP=59;MQRankSum=0.000;QUALapprox=928;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-0.469;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:23,35,0:58:99:928,0,559,996,664,1660:10,13,16,19 +chrX 2189166 . T . . END=2189218 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 2189219 . G A, 890.64 . AS_QUALapprox=|898|0;AS_VarDP=26|32|0;BaseQRankSum=-1.142;DP=60;MQRankSum=0.000;QUALapprox=898;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=0.008;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:26,32,0:58:99:898,0,719,976,816,1792:12,14,14,18 +chrX 2189220 . A . . END=2189287 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 2189288 . C A, 1031.64 . AS_QUALapprox=|1039|0;AS_VarDP=24|37|0;BaseQRankSum=-0.494;DP=64;MQRankSum=0.000;QUALapprox=1039;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=0.783;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:24,37,0:61:99:1039,0,600,1110,711,1821:12,12,17,20 +chrX 2189289 . C . . END=2189324 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 2189325 . ATTT A,ATTTTT, 457.02 . AS_QUALapprox=|134|316|0;AS_VarDP=5|8|15|0;BaseQRankSum=-0.750;DP=54;MQRankSum=0.000;QUALapprox=474;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190400,54;ReadPosRankSum=-1.687;VarDP=28 GT:AD:DP:GQ:PL:SB 1/2:5,8,15,0:28:99:474,340,701,158,0,365,553,585,332,845:5,0,10,13 +chrX 2189329 . T . . END=2189346 GT:DP:GQ:MIN_DP:PL 0/0:46:60:46:0,60,900 +chrX 2189347 . T . . END=2189350 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,787 +chrX 2189351 . G . . END=2190290 GT:DP:GQ:MIN_DP:PL 0/0:61:41:61:0,41,1225 +chrX 2190291 . G GA, 840.60 . AS_QUALapprox=|848|0;AS_VarDP=38|37|0;BaseQRankSum=-0.606;DP=83;MQRankSum=0.000;QUALapprox=848;RAW_GT_COUNT=0,1,0;RAW_MQandDP=298800,83;ReadPosRankSum=1.262;VarDP=75 GT:AD:DP:GQ:PL:SB 0/1:38,37,0:75:99:848,0,907,963,1019,1981:24,14,18,19 +chrX 2190292 . A . . END=2190440 GT:DP:GQ:MIN_DP:PL 0/0:77:99:77:0,120,1800 +chrX 2190441 . A C, 681.64 . AS_QUALapprox=|689|0;AS_VarDP=37|29|0;BaseQRankSum=-0.508;DP=67;MQRankSum=0.000;QUALapprox=689;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=-0.342;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:37,29,0:66:99:689,0,987,801,1073,1874:16,21,14,15 +chrX 2190442 . C . . END=2191518 GT:DP:GQ:MIN_DP:PL 0/0:55:65:55:0,65,1396 +chrX 2191519 . T C, 857.64 . AS_QUALapprox=|865|0;AS_VarDP=23|31|0;BaseQRankSum=-1.333;DP=57;MQRankSum=0.000;QUALapprox=865;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-0.263;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:23,31,0:54:99:865,0,627,934,720,1655:13,10,16,15 +chrX 2191520 . A . . END=2191809 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,115,1777 +chrX 2191810 . A G, 682.64 . AS_QUALapprox=|690|0;AS_VarDP=34|27|0;BaseQRankSum=-1.129;DP=64;MQRankSum=0.000;QUALapprox=690;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=-0.559;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:34,27,0:61:99:690,0,969,792,1050,1842:19,15,11,16 +chrX 2191811 . C . . END=2192121 GT:DP:GQ:MIN_DP:PL 0/0:61:91:61:0,91,1299 +chrX 2192122 . C CA, 413.60 . AS_QUALapprox=|421|0;AS_VarDP=17|25|0;BaseQRankSum=-1.229;DP=64;MQRankSum=0.000;QUALapprox=421;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=-0.692;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:17,25,0:42:99:421,0,277,472,351,823:10,7,13,12 +chrX 2192123 . A . . END=2193128 GT:DP:GQ:MIN_DP:PL 0/0:60:89:60:0,89,1275 +chrX 2193129 . T C, 776.64 . AS_QUALapprox=|784|0;AS_VarDP=28|30|0;BaseQRankSum=0.084;DP=64;MQRankSum=0.000;QUALapprox=784;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=-0.451;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:28,30,0:58:99:784,0,729,868,819,1687:15,13,17,13 +chrX 2193130 . C . . END=2193158 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 2193159 . C G, 609.64 . AS_QUALapprox=|617|0;AS_VarDP=34|25|0;BaseQRankSum=1.091;DP=60;MQRankSum=0.000;QUALapprox=617;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=0.299;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:34,25,0:59:99:617,0,859,719,934,1653:20,14,12,13 +chrX 2193160 . G . . END=2193700 GT:DP:GQ:MIN_DP:PL 0/0:56:65:56:0,65,1229 +chrX 2193701 . A . . END=2193701 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,743 +chrX 2193702 . C . . END=2193704 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,102,1530 +chrX 2193705 . A . . END=2193705 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,837 +chrX 2193706 . C . . END=2193708 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,105,1575 +chrX 2193709 . A . . END=2193709 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,897 +chrX 2193710 . C . . END=2193716 GT:DP:GQ:MIN_DP:PL 0/0:40:51:40:0,51,1036 +chrX 2193717 . A . . END=2193717 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,987 +chrX 2193718 . C . . END=2193720 GT:DP:GQ:MIN_DP:PL 0/0:41:95:41:0,95,1281 +chrX 2193721 . A . . END=2193722 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,1053 +chrX 2193723 . C . . END=2193725 GT:DP:GQ:MIN_DP:PL 0/0:42:36:40:0,36,1121 +chrX 2193726 . T . . END=2193726 GT:DP:GQ:MIN_DP:PL 0/0:41:4:41:0,4,1147 +chrX 2193727 . C . . END=2193728 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,108,1620 +chrX 2193729 . A . . END=2193729 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,1013 +chrX 2193730 . T . . END=2193732 GT:DP:GQ:MIN_DP:PL 0/0:40:93:40:0,93,1276 +chrX 2193733 . A . . END=2193733 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,974 +chrX 2193734 . T . . END=2193914 GT:DP:GQ:MIN_DP:PL 0/0:41:39:39:0,39,1096 +chrX 2193915 . C CATCT, 908.60 . AS_QUALapprox=|916|0;AS_VarDP=35|25|0;BaseQRankSum=0.205;DP=66;MQRankSum=0.000;QUALapprox=916;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=-0.105;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:35,25,0:60:99:916,0,1341,1022,1416,2438:25,10,16,9 +chrX 2193916 . A . . END=2193959 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 2193960 . T G, 537.64 . AS_QUALapprox=|545|0;AS_VarDP=30|23|0;BaseQRankSum=-0.974;DP=59;MQRankSum=0.000;QUALapprox=545;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=0.090;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:30,23,0:53:99:545,0,814,635,883,1518:20,10,16,7 +chrX 2193961 . T . . END=2194097 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,106,1649 +chrX 2194098 . A C, 738.64 . AS_QUALapprox=|746|0;AS_VarDP=31|20|0;BaseQRankSum=2.089;DP=52;MQRankSum=0.000;QUALapprox=746;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=2.065;VarDP=51 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:31,20,0:51:99:0|1:2194098_A_C:746,0,1231,840,1291,2131:2194098:17,14,11,9 +chrX 2194099 . T . . END=2194099 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 2194100 . CTATT C, 733.60 . AS_QUALapprox=|741|0;AS_VarDP=33|20|0;BaseQRankSum=1.127;DP=57;MQRankSum=0.000;QUALapprox=741;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=2.001;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:33,20,0:53:99:0|1:2194098_A_C:741,0,1292,840,1353,2193:2194098:18,15,11,9 +chrX 2194105 . A . . END=2194266 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 2194267 . C G, 837.64 . AS_QUALapprox=|845|0;AS_VarDP=29|31|0;BaseQRankSum=0.463;DP=60;MQRankSum=0.000;QUALapprox=845;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=-0.422;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:29,31,0:60:99:845,0,767,932,860,1792:9,20,20,11 +chrX 2194268 . G . . END=2194300 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 2194301 . G C, 839.64 . AS_QUALapprox=|847|0;AS_VarDP=32|33|0;BaseQRankSum=-1.772;DP=65;MQRankSum=0.000;QUALapprox=847;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=-0.755;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:32,33,0:65:99:847,0,872,943,971,1914:10,22,18,15 +chrX 2194302 . T . . END=2194327 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 2194328 . A G, 876.64 . AS_QUALapprox=|884|0;AS_VarDP=35|34|0;BaseQRankSum=-2.328;DP=71;MQRankSum=0.000;QUALapprox=884;RAW_GT_COUNT=0,1,0;RAW_MQandDP=255600,71;ReadPosRankSum=0.300;VarDP=69 GT:AD:DP:GQ:PL:SB 0/1:35,34,0:69:99:884,0,988,990,1091,2080:13,22,19,15 +chrX 2194329 . T . . END=2194408 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 2194409 . C T, 1311.64 . AS_QUALapprox=|1319|0;AS_VarDP=26|34|0;BaseQRankSum=-2.729;DP=61;MQRankSum=0.000;QUALapprox=1319;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=0.361;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,34,0:60:99:0|1:2194409_C_T:1319,0,968,1397,1071,2468:2194409:12,14,14,20 +chrX 2194410 . A . . END=2194415 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 2194416 . TTA T, 1316.60 . AS_QUALapprox=|1324|0;AS_VarDP=24|34|0;BaseQRankSum=-1.450;DP=59;MQRankSum=0.000;QUALapprox=1324;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-0.324;VarDP=58 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,34,0:58:99:0|1:2194409_C_T:1324,0,905,1396,1008,2404:2194409:12,12,14,20 +chrX 2194419 . C . . END=2194542 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 2194543 . T G, 888.64 . AS_QUALapprox=|896|0;AS_VarDP=28|32|0;BaseQRankSum=-1.310;DP=60;MQRankSum=0.000;QUALapprox=896;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=-0.556;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:28,32,0:60:99:896,0,793,980,889,1869:19,9,16,16 +chrX 2194544 . T . . END=2195066 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 2195067 . G C, 559.64 . AS_QUALapprox=|567|0;AS_VarDP=37|22|0;BaseQRankSum=-0.114;DP=62;MQRankSum=0.000;QUALapprox=567;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=1.113;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:37,22,0:59:99:567,0,1078,679,1144,1823:20,17,13,9 +chrX 2195068 . G . . END=2195749 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,113,1732 +chrX 2195750 . A C, 1695.06 . AS_QUALapprox=|1709|0;AS_VarDP=0|54|0;DP=54;QUALapprox=1709;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:1709,161,0,1709,161,1709:0,0,25,29 +chrX 2195751 . C . . END=2195777 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,113,1540 +chrX 2195778 . T TTTTC, 543.60 . AS_QUALapprox=|551|0;AS_VarDP=29|19|0;BaseQRankSum=-3.218;DP=58;MQRankSum=0.000;QUALapprox=551;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-0.542;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:29,19,0:48:99:551,0,886,639,944,1583:17,12,9,10 +chrX 2195779 . T . . END=2195789 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 2195790 . C CTTT, 829.60 . AS_QUALapprox=|837|0;AS_VarDP=19|27|0;BaseQRankSum=0.645;DP=53;MQRankSum=0.000;QUALapprox=837;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=0.871;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:19,27,0:46:99:837,0,577,895,659,1554:9,10,16,11 +chrX 2195791 . T . . END=2195799 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,108,1800 +chrX 2195800 . G . . END=2195802 GT:DP:GQ:MIN_DP:PL 0/0:62:0:62:0,0,1491 +chrX 2195803 . A . . END=2196427 GT:DP:GQ:MIN_DP:PL 0/0:67:68:67:0,68,1643 +chrX 2196428 . G A, 1971.06 . AS_QUALapprox=|1985|0;AS_VarDP=0|61|0;DP=63;QUALapprox=1985;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=61 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:1985,183,0,1985,183,1985:0,0,30,31 +chrX 2196429 . A . . END=2196905 GT:DP:GQ:MIN_DP:PL 0/0:64:60:64:0,60,1399 +chrX 2196906 . AT A, 90.60 . AS_QUALapprox=|98|0;AS_VarDP=7|8|0;BaseQRankSum=-1.426;DP=47;MQRankSum=-0.623;QUALapprox=98;RAW_GT_COUNT=0,1,0;RAW_MQandDP=161013,47;ReadPosRankSum=-0.565;VarDP=15 GT:AD:DP:GQ:PL:SB 0/1:7,8,0:15:89:98,0,89,119,112,230:6,1,3,5 +chrX 2196908 . T . . END=2197082 GT:DP:GQ:MIN_DP:PL 0/0:47:51:47:0,51,765 +chrX 2197083 . G A, 735.64 . AS_QUALapprox=|743|0;AS_VarDP=32|28|0;BaseQRankSum=-0.896;DP=62;MQRankSum=0.000;QUALapprox=743;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=1.192;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:32,28,0:60:99:0|1:2197083_G_A:743,0,1217,839,1301,2140:2197083:9,23,15,13 +chrX 2197084 . T . . END=2197089 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 2197090 . T G, 755.64 . AS_QUALapprox=|763|0;AS_VarDP=27|31|0;BaseQRankSum=-3.386;DP=59;MQRankSum=0.000;QUALapprox=763;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-1.216;VarDP=58 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:27,31,0:58:99:1|0:2197083_G_A:763,0,1029,844,1121,1965:2197083:15,12,8,23 +chrX 2197091 . T . . END=2197412 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 2197413 . CT C, 367.60 . AS_QUALapprox=|375|0;AS_VarDP=29|20|0;BaseQRankSum=1.186;DP=63;MQRankSum=1.216;QUALapprox=375;RAW_GT_COUNT=0,1,0;RAW_MQandDP=224761,63;ReadPosRankSum=-1.088;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:29,20,0:49:99:375,0,603,462,664,1125:17,12,11,9 +chrX 2197415 . T . . END=2197890 GT:DP:GQ:MIN_DP:PL 0/0:69:95:69:0,95,1414 +chrX 2197891 . A G, 1968.06 . AS_QUALapprox=|1982|0;AS_VarDP=0|60|0;DP=62;QUALapprox=1982;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:1982,180,0,1982,180,1982:0,0,32,28 +chrX 2197892 . G . . END=2198074 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 2198075 . T C, 2516.06 . AS_QUALapprox=|2530|0;AS_VarDP=0|80|0;DP=83;QUALapprox=2530;RAW_GT_COUNT=0,0,1;RAW_MQandDP=298800,83;VarDP=80 GT:AD:DP:GQ:PL:SB 1/1:0,80,0:80:99:2530,240,0,2530,240,2530:0,0,37,43 +chrX 2198076 . A . . END=2198238 GT:DP:GQ:MIN_DP:PL 0/0:75:99:75:0,114,1710 +chrX 2198239 . T C, 1390.06 . AS_QUALapprox=|1404|0;AS_VarDP=0|43|0;DP=46;QUALapprox=1404;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;VarDP=43 GT:AD:DP:GQ:PL:SB 1/1:0,43,0:43:99:1404,129,0,1404,129,1404:0,0,22,21 +chrX 2198240 . C . . END=2198371 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,113,1429 +chrX 2198372 . A G, 1880.06 . AS_QUALapprox=|1894|0;AS_VarDP=0|59|0;DP=59;QUALapprox=1894;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1894,177,0,1894,177,1894:0,0,31,28 +chrX 2198373 . G . . END=2198497 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 2198498 . T C, 2481.06 . AS_QUALapprox=|2495|0;AS_VarDP=0|58|0;DP=60;QUALapprox=2495;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=58 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,58,0:58:99:0|1:2198498_T_C:2495,175,0,2495,175,2495:2198498:0,0,24,34 +chrX 2198499 . C . . END=2198520 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 2198521 . A G, 2545.06 . AS_QUALapprox=|2559|0;AS_VarDP=0|58|0;DP=58;QUALapprox=2559;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=58 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,58,0:58:99:0|1:2198498_T_C:2559,175,0,2559,175,2559:2198498:0,0,26,32 +chrX 2198522 . A T, 2485.06 . AS_QUALapprox=|2499|0;AS_VarDP=0|56|0;DP=57;QUALapprox=2499;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,56,0:56:99:0|1:2198498_T_C:2499,169,0,2499,169,2499:2198498:0,0,25,31 +chrX 2198523 . G . . END=2199007 GT:DP:GQ:MIN_DP:PL 0/0:58:83:58:0,83,1320 +chrX 2199008 . C CCA, 2341.03 . AS_QUALapprox=|2355|0;AS_VarDP=0|53|0;DP=57;QUALapprox=2355;RAW_GT_COUNT=0,0,1;RAW_MQandDP=197502,57;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:2355,159,0,2355,160,2355:0,0,24,29 +chrX 2199009 . C . . END=2199122 GT:DP:GQ:MIN_DP:PL 0/0:62:35:61:0,35,1660 +chrX 2199123 . C T, 932.64 . AS_QUALapprox=|940|0;AS_VarDP=18|36|0;BaseQRankSum=-1.449;DP=54;MQRankSum=0.050;QUALapprox=940;RAW_GT_COUNT=0,1,0;RAW_MQandDP=185672,54;ReadPosRankSum=-1.331;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:18,36,0:54:99:940,0,415,993,522,1515:7,11,17,19 +chrX 2199124 . T . . END=2199145 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 2199146 . T C, 2389.06 . AS_QUALapprox=|2403|0;AS_VarDP=0|55|0;DP=55;QUALapprox=2403;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187324,55;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,55,0:55:99:0|1:2199146_T_C:2403,166,0,2403,166,2403:2199146:0,0,27,28 +chrX 2199147 . G . . END=2199183 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,99,1485 +chrX 2199184 . G C, 2194.06 . AS_QUALapprox=|2208|0;AS_VarDP=0|51|0;DP=51;QUALapprox=2208;RAW_GT_COUNT=0,0,1;RAW_MQandDP=177160,51;VarDP=51 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,51,0:51:99:0|1:2199146_T_C:2208,153,0,2208,153,2208:2199146:0,0,25,26 +chrX 2199185 . A . . END=2199185 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,102,1530 +chrX 2199186 . C T, 2194.06 . AS_QUALapprox=|2208|0;AS_VarDP=0|51|0;DP=52;QUALapprox=2208;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180760,52;VarDP=51 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,51,0:51:99:0|1:2199146_T_C:2208,153,0,2208,153,2208:2199146:0,0,25,26 +chrX 2199187 . G . . END=2199307 GT:DP:GQ:MIN_DP:PL 0/0:49:78:49:0,78,1298 +chrX 2199308 . C T, 1305.06 . AS_QUALapprox=|1319|0;AS_VarDP=4|44|0;BaseQRankSum=3.604;DP=50;MQRankSum=2.036;QUALapprox=1319;RAW_GT_COUNT=0,0,1;RAW_MQandDP=171266,50;ReadPosRankSum=-0.653;VarDP=48 GT:AD:DP:GQ:PL:SB 1/1:4,44,0:48:89:1319,89,0,1330,131,1372:1,3,22,22 +chrX 2199309 . G . . END=2199319 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 2199320 . C . . END=2199320 GT:DP:GQ:MIN_DP:PL 0/0:67:13:67:0,13,1751 +chrX 2199321 . G . . END=2199413 GT:DP:GQ:MIN_DP:PL 0/0:63:62:63:0,62,1562 +chrX 2199414 . T C, 2855.06 . AS_QUALapprox=|2869|0;AS_VarDP=0|64|0;DP=68;QUALapprox=2869;RAW_GT_COUNT=0,0,1;RAW_MQandDP=236616,68;VarDP=64 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,64,0:64:99:0|1:2199414_T_C:2869,193,0,2869,193,2869:2199414:0,0,26,38 +chrX 2199415 . G A, 2855.06 . AS_QUALapprox=|2869|0;AS_VarDP=0|64|0;DP=69;QUALapprox=2869;RAW_GT_COUNT=0,0,1;RAW_MQandDP=240216,69;VarDP=64 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,64,0:64:99:0|1:2199414_T_C:2869,193,0,2869,193,2869:2199414:0,0,26,38 +chrX 2199416 . G . . END=2199562 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 2199563 . C T, 1910.06 . AS_QUALapprox=|1924|0;AS_VarDP=0|59|0;DP=61;QUALapprox=1924;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1924,177,0,1924,177,1924:0,0,34,25 +chrX 2199564 . T . . END=2199633 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 2199634 . GT G, 2821.03 . AS_QUALapprox=|2835|0;AS_VarDP=0|63|0;DP=67;QUALapprox=2835;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=63 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,63,0:63:99:0|1:2199634_GT_G:2835,190,0,2835,190,2835:2199634:0,0,30,33 +chrX 2199636 . G GCC, 2821.03 . AS_QUALapprox=|2835|0;AS_VarDP=0|63|0;DP=65;QUALapprox=2835;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=63 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,63,0:63:99:0|1:2199634_GT_G:2835,190,0,2835,190,2835:2199634:0,0,30,33 +chrX 2199637 . G . . END=2199844 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,106,1800 +chrX 2199845 . C T, 445.06 . AS_QUALapprox=|459|0;AS_VarDP=0|11|0;DP=66;QUALapprox=459;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=11 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,11,0:11:39:0|1:2199845_C_T:459,39,0,473,56,490:2199845:0,0,6,5 +chrX 2199846 . C . . END=2199847 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 2199848 . ATCTCTGCTAAAAATAAACATTAAAAAATGTTTTATGTTTGAGATAGGGTGTGGTGGTGTGCACCTGTAGATGTAGTGAGATCCCCG A,GTCTCTGCTAAAAATAAACATTAAAAAATGTTTTATGTTTGAGATAGGGTGTGGTGGTGTGCACCTGTAGATGTAGTGAGATCCCCG, 2152.06 . AS_QUALapprox=|627|2166|0;AS_VarDP=0|0|33|0;DP=92;QUALapprox=2166;RAW_GT_COUNT=0,0,1;RAW_MQandDP=331200,92;VarDP=33 GT:AD:DP:GQ:PL:SB 2/2:0,0,33,0:33:99:2166,1539,3037,168,191,0,1957,2378,259,2622:0,0,19,14 +chrX 2199872 . AAAAT *,A, 1319.05 . AS_QUALapprox=|0|1897|0;AS_VarDP=0|0|27|0;DP=78;QUALapprox=1897;RAW_GT_COUNT=0,0,1;RAW_MQandDP=280800,78;VarDP=27 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 2|2:0,0,27,0:27:99:0|1:2199845_C_T:1897,1297,2484,145,149,0,1686,1965,217,2211:2199845:0,0,16,11 +chrX 2199934 . G *,A, 1441.05 . AS_QUALapprox=|0|2138|0;AS_VarDP=0|0|33|0;DP=61;QUALapprox=2138;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=33 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 2|2:0,0,33,0:33:99:0|1:2199845_C_T:2138,1428,1827,157,112,0,1846,1675,180,1998:2199845:0,0,19,14 +chrX 2199935 . T . . END=2199991 GT:DP:GQ:MIN_DP:PL 0/0:60:93:60:0,93,1395 +chrX 2199992 . G A, 2449.06 . AS_QUALapprox=|2463|0;AS_VarDP=0|62|0;DP=62;QUALapprox=2463;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=62 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,62,0:62:99:0|1:2199845_C_T:2463,186,0,2463,186,2463:2199845:0,0,35,27 +chrX 2199993 . T . . END=2200818 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,104,1564 +chrX 2200819 . G A, 1631.06 . AS_QUALapprox=|1645|0;AS_VarDP=0|53|0;DP=57;QUALapprox=1645;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1645,158,0,1645,158,1645:0,0,29,24 +chrX 2200820 . T . . END=2201167 GT:DP:GQ:MIN_DP:PL 0/0:54:87:54:0,87,1399 +chrX 2201168 . A G, 1376.06 . AS_QUALapprox=|1390|0;AS_VarDP=0|42|0;DP=43;QUALapprox=1390;RAW_GT_COUNT=0,0,1;RAW_MQandDP=152881,43;VarDP=42 GT:AD:DP:GQ:PL:SB 1/1:0,42,0:42:99:1390,126,0,1390,126,1390:0,0,25,17 +chrX 2201169 . T . . END=2201295 GT:DP:GQ:MIN_DP:PL 0/0:51:41:51:0,41,1339 +chrX 2201296 . C CA,CAA, 904.02 . AS_QUALapprox=|626|714|0;AS_VarDP=0|14|19|0;DP=57;QUALapprox=921;RAW_GT_COUNT=0,0,1;RAW_MQandDP=199281,57;VarDP=33 GT:AD:DP:GQ:PL:SB 1/2:0,14,19,0:33:99:921,404,295,283,0,207,812,388,281,762:0,0,18,15 +chrX 2201297 . A . . END=2201419 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,114,1555 +chrX 2201420 . A G, 2219.06 . AS_QUALapprox=|2233|0;AS_VarDP=0|53|0;DP=55;QUALapprox=2233;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,53,0:53:99:0|1:2201420_A_G:2233,159,0,2233,159,2233:2201420:0,0,26,27 +chrX 2201421 . C . . END=2201441 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,117,1755 +chrX 2201442 . A C, 2140.06 . AS_QUALapprox=|2154|0;AS_VarDP=0|50|0;DP=51;QUALapprox=2154;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,50,0:50:99:0|1:2201420_A_G:2154,150,0,2154,150,2154:2201420:0,0,24,26 +chrX 2201443 . C . . END=2201931 GT:DP:GQ:MIN_DP:PL 0/0:56:74:56:0,74,1180 +chrX 2201932 . A . . END=2201933 GT:DP:GQ:MIN_DP:PL 0/0:75:9:75:0,9,2006 +chrX 2201934 . T . . END=2201935 GT:DP:GQ:MIN_DP:PL 0/0:76:29:74:0,29,2094 +chrX 2201936 . G . . END=2201937 GT:DP:GQ:MIN_DP:PL 0/0:79:0:79:0,0,1953 +chrX 2201938 . A . . END=2201939 GT:DP:GQ:MIN_DP:PL 0/0:90:99:90:0,120,1800 +chrX 2201940 . T . . END=2201941 GT:DP:GQ:MIN_DP:PL 0/0:82:0:82:0,0,1816 +chrX 2201942 . C . . END=2201973 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,99,1485 +chrX 2201974 . A ATGTGTG, 966.03 . AS_QUALapprox=|980|0;AS_VarDP=0|22|0;DP=57;QUALapprox=980;RAW_GT_COUNT=0,0,1;RAW_MQandDP=195332,57;VarDP=22 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,22,0:22:67:0|1:2201974_A_ATGTGTG:980,67,0,982,68,983:2201974:0,0,9,13 +chrX 2201975 . T . . END=2201990 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 2201991 . G T, 357.64 . AS_QUALapprox=|365|0;AS_VarDP=32|11|0;BaseQRankSum=0.802;DP=56;MQRankSum=-1.800;QUALapprox=365;RAW_GT_COUNT=0,1,0;RAW_MQandDP=193028,56;ReadPosRankSum=2.771;VarDP=43 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:32,11,0:43:99:0|1:2201974_A_ATGTGTG:365,0,1300,463,1333,1796:2201974:16,16,5,6 +chrX 2201992 . A . . END=2201997 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 2201998 . A ATGTGTATATATATAT,ATGTGTATATATATATAT, 1067.02 . AS_QUALapprox=|596|484|0;AS_VarDP=0|15|13|0;DP=54;QUALapprox=1084;RAW_GT_COUNT=0,0,1;RAW_MQandDP=185828,54;VarDP=28 GT:AD:DP:GQ:PL:SB 1/2:0,15,13,0:28:99:1084,488,738,600,0,1103,1147,685,913,1537:0,0,15,13 +chrX 2201999 . G . . END=2201999 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 2202000 . G GAT, 558.60 . AS_QUALapprox=|566|0;AS_VarDP=17|15|0;BaseQRankSum=-0.033;DP=55;MQRankSum=0.953;QUALapprox=566;RAW_GT_COUNT=0,1,0;RAW_MQandDP=189428,55;ReadPosRankSum=0.738;VarDP=32 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:17,15,0:32:99:0|1:2202000_G_GAT:566,0,671,619,716,1335:2202000:9,8,8,7 +chrX 2202001 . A . . END=2202002 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,114,1710 +chrX 2202003 . A . . END=2202003 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,1003 +chrX 2202004 . TAG T, 576.04 . AS_QUALapprox=|649|0;AS_VarDP=21|17|0;BaseQRankSum=-0.100;DP=49;MQRankSum=-1.244;QUALapprox=649;RAW_GT_COUNT=0,1,0;RAW_MQandDP=167828,49;ReadPosRankSum=0.373;VarDP=38 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:21,17,0:38:99:1|0:2202000_G_GAT:649,0,825,662,813,1627:2202000:8,8,7,6 +chrX 2202006 . G *,GGAT, 618.19 . AS_QUALapprox=|0|877|0;AS_VarDP=0|17|15|0;DP=48;QUALapprox=1544;RAW_GT_COUNT=0,0,1;RAW_MQandDP=164228,48;VarDP=32 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|2:0,17,15,0:32:99:0|1:2202000_G_GAT:1544,636,616,728,0,667,1458,661,731,1464:2202000:0,0,17,15 +chrX 2202007 . A . . END=2202009 GT:DP:GQ:MIN_DP:PL 0/0:47:2:47:0,2,1254 +chrX 2202010 . G GGAT, 577.01 . AS_QUALapprox=|648|0;AS_VarDP=21|17|0;BaseQRankSum=-1.782;DP=48;MQRankSum=-1.007;QUALapprox=648;RAW_GT_COUNT=0,1,0;RAW_MQandDP=164228,48;ReadPosRankSum=0.904;VarDP=38 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:21,17,0:38:99:1|0:2202000_G_GAT:648,0,828,656,906,1696:2202000:10,11,7,6 +chrX 2202011 . A . . END=2202024 GT:DP:GQ:MIN_DP:PL 0/0:69:0:69:0,0,1052 +chrX 2202025 . A . . END=2202151 GT:DP:GQ:MIN_DP:PL 0/0:53:53:53:0,53,1424 +chrX 2202152 . C T, 1495.06 . AS_QUALapprox=|1509|0;AS_VarDP=0|44|0;DP=48;QUALapprox=1509;RAW_GT_COUNT=0,0,1;RAW_MQandDP=170800,48;VarDP=44 GT:AD:DP:GQ:PL:SB 1/1:0,44,0:44:99:1509,132,0,1509,132,1509:0,0,16,28 +chrX 2202153 . C . . END=2202487 GT:DP:GQ:MIN_DP:PL 0/0:49:80:49:0,80,1023 +chrX 2202488 . C A, 1459.06 . AS_QUALapprox=|1473|0;AS_VarDP=0|45|0;DP=47;QUALapprox=1473;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;VarDP=45 GT:AD:DP:GQ:PL:SB 1/1:0,45,0:45:99:1473,135,0,1473,135,1473:0,0,31,14 +chrX 2202489 . A . . END=2202555 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,104,1275 +chrX 2202556 . T C, 2551.06 . AS_QUALapprox=|2565|0;AS_VarDP=0|57|0;DP=57;QUALapprox=2565;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=57 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,57,0:57:99:0|1:2202556_T_C:2565,172,0,2565,172,2565:2202556:0,0,24,33 +chrX 2202557 . G A, 2591.06 . AS_QUALapprox=|2605|0;AS_VarDP=0|58|0;DP=58;QUALapprox=2605;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=58 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,58,0:58:99:0|1:2202556_T_C:2605,175,0,2605,175,2605:2202556:0,0,25,33 +chrX 2202558 . A . . END=2202579 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 2202580 . A AT, 722.60 . AS_QUALapprox=|730|0;AS_VarDP=31|30|0;BaseQRankSum=-1.466;DP=64;MQRankSum=0.000;QUALapprox=730;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=0.837;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:31,30,0:61:99:730,0,845,823,933,1756:14,17,13,17 +chrX 2202581 . A AAT,AT, 2590.02 . AS_QUALapprox=|1877|1762|0;AS_VarDP=0|31|30|0;DP=65;QUALapprox=2607;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=61 GT:AD:DP:GQ:PL:SB 1/2:0,31,30,0:61:99:2607,914,730,1009,0,845,2301,895,991,2182:0,0,27,34 +chrX 2202582 . A . . END=2202703 GT:DP:GQ:MIN_DP:PL 0/0:65:74:65:0,74,1800 +chrX 2202704 . G GTATA, 1040.60 . AS_QUALapprox=|1048|0;AS_VarDP=14|28|0;BaseQRankSum=1.894;DP=52;MQRankSum=-0.657;QUALapprox=1048;RAW_GT_COUNT=0,1,0;RAW_MQandDP=186625,52;ReadPosRankSum=0.708;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:14,28,0:42:99:1048,0,482,1090,567,1657:6,8,15,13 +chrX 2202705 . T . . END=2202719 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 2202720 . G . . END=2202720 GT:DP:GQ:MIN_DP:PL 0/0:53:0:53:0,0,1226 +chrX 2202721 . T . . END=2202895 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,108,1454 +chrX 2202896 . C T, 2024.06 . AS_QUALapprox=|2038|0;AS_VarDP=0|64|0;DP=66;QUALapprox=2038;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=64 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:2038,192,0,2038,192,2038:0,0,32,32 +chrX 2202897 . T . . END=2203036 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,116,1763 +chrX 2203037 . C T, 523.64 . AS_QUALapprox=|531|0;AS_VarDP=29|24|0;BaseQRankSum=-1.362;DP=58;MQRankSum=0.000;QUALapprox=531;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-0.322;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:29,24,0:53:99:531,0,781,617,851,1468:19,10,15,9 +chrX 2203038 . A . . END=2203039 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 2203040 . G GATC, 2235.03 . AS_QUALapprox=|2249|0;AS_VarDP=0|51|0;DP=55;QUALapprox=2249;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:2249,153,0,2249,153,2249:0,0,34,17 +chrX 2203041 . A . . END=2203092 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 2203093 . C T, 1960.06 . AS_QUALapprox=|1974|0;AS_VarDP=0|61|0;DP=65;QUALapprox=1974;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=61 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:1974,183,0,1974,183,1974:0,0,32,29 +chrX 2203094 . G . . END=2203237 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 2203238 . A T, 1692.06 . AS_QUALapprox=|1706|0;AS_VarDP=0|50|0;DP=51;QUALapprox=1706;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1706,150,0,1706,150,1706:0,0,19,31 +chrX 2203239 . T . . END=2203290 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 2203291 . C T, 1786.06 . AS_QUALapprox=|1800|0;AS_VarDP=0|53|0;DP=57;QUALapprox=1800;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1800,159,0,1800,159,1800:0,0,26,27 +chrX 2203292 . T . . END=2203322 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 2203323 . C T, 679.64 . AS_QUALapprox=|687|0;AS_VarDP=29|25|0;BaseQRankSum=-1.511;DP=55;MQRankSum=0.000;QUALapprox=687;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-0.877;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:29,25,0:54:99:687,0,845,774,920,1694:17,12,12,13 +chrX 2203324 . G . . END=2203386 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 2203387 . T C, 1656.06 . AS_QUALapprox=|1670|0;AS_VarDP=0|54|0;DP=58;QUALapprox=1670;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:1670,162,0,1670,162,1670:0,0,22,32 +chrX 2203388 . G . . END=2203455 GT:DP:GQ:MIN_DP:PL 0/0:58:68:58:0,68,1177 +chrX 2203456 . A . . END=2203456 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,944 +chrX 2203457 . C . . END=2203459 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,117,1755 +chrX 2203460 . A . . END=2203460 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,997 +chrX 2203461 . C . . END=2203465 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,108,1620 +chrX 2203466 . A . . END=2203466 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,988 +chrX 2203467 . A . . END=2203473 GT:DP:GQ:MIN_DP:PL 0/0:44:80:44:0,80,1300 +chrX 2203474 . A . . END=2203474 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,1076 +chrX 2203475 . T . . END=2203526 GT:DP:GQ:MIN_DP:PL 0/0:41:61:41:0,61,1071 +chrX 2203527 . T C, 1311.06 . AS_QUALapprox=|1325|0;AS_VarDP=0|41|0;DP=44;QUALapprox=1325;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158400,44;VarDP=41 GT:AD:DP:GQ:PL:SB 1/1:0,41,0:41:99:1325,122,0,1325,122,1325:0,0,20,21 +chrX 2203528 . C . . END=2203615 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,112,1330 +chrX 2203616 . C T, 2170.06 . AS_QUALapprox=|2184|0;AS_VarDP=0|70|0;DP=73;QUALapprox=2184;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;VarDP=70 GT:AD:DP:GQ:PL:SB 1/1:0,70,0:70:99:2184,210,0,2184,210,2184:0,0,41,29 +chrX 2203617 . A . . END=2203671 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,120,1800 +chrX 2203672 . G A, 940.64 . AS_QUALapprox=|948|0;AS_VarDP=32|37|0;BaseQRankSum=-1.501;DP=70;MQRankSum=0.000;QUALapprox=948;RAW_GT_COUNT=0,1,0;RAW_MQandDP=252000,70;ReadPosRankSum=0.301;VarDP=69 GT:AD:DP:GQ:PL:SB 0/1:32,37,0:69:99:948,0,845,1045,956,2001:16,16,19,18 +chrX 2203673 . G . . END=2203721 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,120,1800 +chrX 2203722 . T C, 2257.06 . AS_QUALapprox=|2271|0;AS_VarDP=0|71|0;DP=71;QUALapprox=2271;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255025,71;VarDP=71 GT:AD:DP:GQ:PL:SB 1/1:0,71,0:71:99:2271,213,0,2271,213,2271:0,0,34,37 +chrX 2203723 . C . . END=2203866 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 2203867 . A G, 1711.06 . AS_QUALapprox=|1725|0;AS_VarDP=0|57|0;DP=62;QUALapprox=1725;RAW_GT_COUNT=0,0,1;RAW_MQandDP=221625,62;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1725,170,0,1725,170,1725:0,0,29,28 +chrX 2203868 . A . . END=2204156 GT:DP:GQ:MIN_DP:PL 0/0:60:90:60:0,90,1678 +chrX 2204157 . T A, 2199.06 . AS_QUALapprox=|2213|0;AS_VarDP=0|64|0;DP=67;QUALapprox=2213;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=64 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:2213,193,0,2213,193,2213:0,0,29,35 +chrX 2204158 . T . . END=2204321 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 2204322 . G A, 2695.06 . AS_QUALapprox=|2709|0;AS_VarDP=0|65|0;DP=66;QUALapprox=2709;RAW_GT_COUNT=0,0,1;RAW_MQandDP=233016,66;VarDP=65 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,65,0:65:99:0|1:2204322_G_A:2709,195,0,2709,195,2709:2204322:0,0,33,32 +chrX 2204323 . A . . END=2204344 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 2204345 . T C, 2586.06 . AS_QUALapprox=|2600|0;AS_VarDP=0|62|0;DP=64;QUALapprox=2600;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223816,64;VarDP=62 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,62,0:62:99:0|1:2204322_G_A:2600,186,0,2600,186,2600:2204322:0,0,31,31 +chrX 2204346 . G . . END=2204426 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,111,1549 +chrX 2204427 . T A, 1714.06 . AS_QUALapprox=|1728|0;AS_VarDP=0|50|0;DP=50;QUALapprox=1728;RAW_GT_COUNT=0,0,1;RAW_MQandDP=178900,50;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1728,150,0,1728,150,1728:0,0,26,24 +chrX 2204428 . G . . END=2204857 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,107,1396 +chrX 2204858 . T C, 2032.06 . AS_QUALapprox=|2046|0;AS_VarDP=0|67|0;DP=68;QUALapprox=2046;RAW_GT_COUNT=0,0,1;RAW_MQandDP=200933,68;VarDP=67 GT:AD:DP:GQ:PL:SB 1/1:0,67,0:67:99:2046,201,0,2046,201,2046:0,0,33,34 +chrX 2204859 . G . . END=2204971 GT:DP:GQ:MIN_DP:PL 0/0:72:65:72:0,65,1405 +chrX 2204972 . A . . END=2204972 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,0 +chrX 2204973 . C . . END=2204993 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,120,1800 +chrX 2204994 . G . . END=2204994 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,307 +chrX 2204995 . A . . END=2205016 GT:DP:GQ:MIN_DP:PL 0/0:41:96:41:0,96,1126 +chrX 2205017 . A . . END=2205017 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,223 +chrX 2205018 . C . . END=2205041 GT:DP:GQ:MIN_DP:PL 0/0:23:31:22:0,31,655 +chrX 2205042 . G . . END=2205042 GT:DP:GQ:MIN_DP:PL 0/0:22:7:22:0,7,595 +chrX 2205043 . G . . END=2205043 GT:DP:GQ:MIN_DP:PL 0/0:21:42:21:0,42,630 +chrX 2205044 . G . . END=2205044 GT:DP:GQ:MIN_DP:PL 0/0:22:17:22:0,17,586 +chrX 2205045 . A . . END=2205048 GT:DP:GQ:MIN_DP:PL 0/0:19:24:19:0,24,405 +chrX 2205049 . C . . END=2205049 GT:DP:GQ:MIN_DP:PL 0/0:17:16:17:0,16,481 +chrX 2205050 . A . . END=2205053 GT:DP:GQ:MIN_DP:PL 0/0:15:20:15:0,20,315 +chrX 2205054 . A . . END=2205068 GT:DP:GQ:MIN_DP:PL 0/0:12:0:12:0,0,0 +chrX 2205069 . C . . END=2205069 GT:DP:GQ:MIN_DP:PL 0/0:10:21:10:0,21,315 +chrX 2205070 . A . . END=2205072 GT:DP:GQ:MIN_DP:PL 0/0:7:7:7:0,7,184 +chrX 2205073 . T . . END=2205073 GT:DP:GQ:MIN_DP:PL 0/0:8:24:8:0,24,268 +chrX 2205074 . G . . END=2205076 GT:DP:GQ:MIN_DP:PL 0/0:10:0:10:0,0,219 +chrX 2205077 . T . . END=2205078 GT:DP:GQ:MIN_DP:PL 0/0:13:30:13:0,30,450 +chrX 2205079 . T . . END=2205079 GT:DP:GQ:MIN_DP:PL 0/0:17:0:17:0,0,403 +chrX 2205080 . T . . END=2205080 GT:DP:GQ:MIN_DP:PL 0/0:17:42:17:0,42,630 +chrX 2205081 . G . . END=2205084 GT:DP:GQ:MIN_DP:PL 0/0:17:0:17:0,0,0 +chrX 2205085 . T . . END=2205129 GT:DP:GQ:MIN_DP:PL 0/0:22:25:20:0,25,596 +chrX 2205130 . G . . END=2205130 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,0 +chrX 2205131 . A . . END=2205161 GT:DP:GQ:MIN_DP:PL 0/0:48:89:48:0,89,1369 +chrX 2205162 . A . . END=2205162 GT:DP:GQ:MIN_DP:PL 0/0:55:0:55:0,0,0 +chrX 2205163 . G . . END=2205248 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 2205249 . T C, 2719.06 . AS_QUALapprox=|2733|0;AS_VarDP=0|64|0;DP=65;QUALapprox=2733;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=64 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,64,0:64:99:0|1:2205249_T_C:2733,193,0,2733,193,2733:2205249:0,0,31,33 +chrX 2205250 . G . . END=2205255 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 2205256 . C T, 2602.06 . AS_QUALapprox=|2616|0;AS_VarDP=0|60|0;DP=62;QUALapprox=2616;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,60,0:60:99:0|1:2205249_T_C:2616,181,0,2616,181,2616:2205249:0,0,30,30 +chrX 2205257 . C . . END=2205507 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,111,1594 +chrX 2205508 . G T, 1458.06 . AS_QUALapprox=|1472|0;AS_VarDP=0|46|0;DP=48;QUALapprox=1472;RAW_GT_COUNT=0,0,1;RAW_MQandDP=170402,48;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1472,138,0,1472,138,1472:0,0,28,18 +chrX 2205509 . T . . END=2205536 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,109,1370 +chrX 2205537 . G A, 1405.06 . AS_QUALapprox=|1419|0;AS_VarDP=0|44|0;DP=46;QUALapprox=1419;RAW_GT_COUNT=0,0,1;RAW_MQandDP=161627,46;VarDP=44 GT:AD:DP:GQ:PL:SB 1/1:0,44,0:44:99:1419,132,0,1419,132,1419:0,0,23,21 +chrX 2205538 . G . . END=2205566 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,108,1296 +chrX 2205567 . T G, 1196.06 . AS_QUALapprox=|1210|0;AS_VarDP=0|39|0;DP=42;QUALapprox=1210;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147227,42;VarDP=39 GT:AD:DP:GQ:PL:SB 1/1:0,39,0:39:99:1210,117,0,1210,117,1210:0,0,21,18 +chrX 2205568 . G . . END=2205613 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1236 +chrX 2205614 . T C, 378.64 . AS_QUALapprox=|386|0;AS_VarDP=20|15|0;BaseQRankSum=0.024;DP=37;MQRankSum=1.285;QUALapprox=386;RAW_GT_COUNT=0,1,0;RAW_MQandDP=129227,37;ReadPosRankSum=1.901;VarDP=35 GT:AD:DP:GQ:PL:SB 0/1:20,15,0:35:99:386,0,550,446,595,1041:9,11,5,10 +chrX 2205615 . G . . END=2205717 GT:DP:GQ:MIN_DP:PL 0/0:41:72:41:0,72,1082 +chrX 2205718 . G A, 1435.06 . AS_QUALapprox=|1449|0;AS_VarDP=0|44|0;DP=45;QUALapprox=1449;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162000,45;VarDP=44 GT:AD:DP:GQ:PL:SB 1/1:0,44,0:44:99:1449,131,0,1449,131,1449:0,0,22,22 +chrX 2205719 . T . . END=2205760 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,102,1401 +chrX 2205761 . C T, 1295.06 . AS_QUALapprox=|1309|0;AS_VarDP=0|42|0;DP=46;QUALapprox=1309;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165025,46;VarDP=42 GT:AD:DP:GQ:PL:SB 1/1:0,42,0:42:99:1309,124,0,1309,124,1309:0,0,22,20 +chrX 2205762 . G . . END=2205820 GT:DP:GQ:MIN_DP:PL 0/0:42:78:42:0,78,1197 +chrX 2205821 . T TCAC, 1690.03 . AS_QUALapprox=|1704|0;AS_VarDP=0|38|0;DP=44;QUALapprox=1704;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154341,44;VarDP=38 GT:AD:DP:GQ:PL:SB 1/1:0,38,0:38:99:1704,114,0,1704,114,1705:0,0,20,18 +chrX 2205822 . C . . END=2205869 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,114,1365 +chrX 2205870 . C T, 2049.06 . AS_QUALapprox=|2063|0;AS_VarDP=0|47|0;DP=47;QUALapprox=2063;RAW_GT_COUNT=0,0,1;RAW_MQandDP=167141,47;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,47,0:47:99:0|1:2205870_C_T:2063,141,0,2063,141,2063:2205870:0,0,24,23 +chrX 2205871 . C . . END=2205901 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 2205902 . T C, 2129.06 . AS_QUALapprox=|2143|0;AS_VarDP=1|50|0;BaseQRankSum=-0.167;DP=51;MQRankSum=-0.101;QUALapprox=2143;RAW_GT_COUNT=0,0,1;RAW_MQandDP=181541,51;ReadPosRankSum=1.394;VarDP=51 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:1,50,0:51:99:0|1:2205870_C_T:2143,119,0,2146,150,2178:2205870:0,1,26,24 +chrX 2205903 . C . . END=2206056 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,100,1523 +chrX 2206057 . G A, 2350.06 . AS_QUALapprox=|2364|0;AS_VarDP=0|53|0;DP=55;QUALapprox=2364;RAW_GT_COUNT=0,0,1;RAW_MQandDP=193769,55;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,53,0:53:99:0|1:2206057_G_A:2364,160,0,2364,160,2364:2206057:0,0,31,22 +chrX 2206058 . G . . END=2206066 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 2206067 . C T, 2582.06 . AS_QUALapprox=|2596|0;AS_VarDP=0|60|0;DP=62;QUALapprox=2596;RAW_GT_COUNT=0,0,1;RAW_MQandDP=218969,62;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,60,0:60:99:0|1:2206057_G_A:2596,181,0,2596,181,2596:2206057:0,0,37,23 +chrX 2206068 . A . . END=2206085 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 2206086 . C T, 2044.06 . AS_QUALapprox=|2058|0;AS_VarDP=0|63|0;DP=67;QUALapprox=2058;RAW_GT_COUNT=0,0,1;RAW_MQandDP=238285,67;VarDP=63 GT:AD:DP:GQ:PL:SB 1/1:0,63,0:63:99:2058,189,0,2058,189,2058:0,0,42,21 +chrX 2206087 . C . . END=2206152 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 2206153 . C T, 2150.06 . AS_QUALapprox=|2164|0;AS_VarDP=1|66|0;BaseQRankSum=2.798;DP=69;MQRankSum=0.000;QUALapprox=2164;RAW_GT_COUNT=0,0,1;RAW_MQandDP=247716,69;ReadPosRankSum=0.724;VarDP=67 GT:AD:DP:GQ:PL:SB 1/1:1,66,0:67:99:2164,191,0,2167,198,2174:1,0,32,34 +chrX 2206154 . C . . END=2206243 GT:DP:GQ:MIN_DP:PL 0/0:74:99:74:0,120,1800 +chrX 2206244 . A G, 644.64 . AS_QUALapprox=|652|0;AS_VarDP=41|27|0;BaseQRankSum=-0.274;DP=72;MQRankSum=0.000;QUALapprox=652;RAW_GT_COUNT=0,1,0;RAW_MQandDP=259200,72;ReadPosRankSum=-0.608;VarDP=68 GT:AD:DP:GQ:PL:SB 0/1:41,27,0:68:99:652,0,1151,776,1232,2007:20,21,14,13 +chrX 2206245 . G . . END=2206295 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 2206296 . A C, 563.64 . AS_QUALapprox=|571|0;AS_VarDP=45|26|0;BaseQRankSum=-2.736;DP=76;MQRankSum=0.000;QUALapprox=571;RAW_GT_COUNT=0,1,0;RAW_MQandDP=273600,76;ReadPosRankSum=0.531;VarDP=71 GT:AD:DP:GQ:PL:SB 0/1:45,26,0:71:99:571,0,1312,706,1389,2095:24,21,14,12 +chrX 2206297 . G . . END=2206406 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 2206407 . T C, 1862.06 . AS_QUALapprox=|1876|0;AS_VarDP=0|58|0;DP=71;QUALapprox=1876;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;VarDP=58 GT:AD:DP:GQ:PL:SB 1/1:0,58,0:58:99:1876,174,0,1876,174,1876:0,0,28,30 +chrX 2206408 . G . . END=2206479 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 2206480 . T C, 2211.06 . AS_QUALapprox=|2225|0;AS_VarDP=0|74|0;DP=92;QUALapprox=2225;RAW_GT_COUNT=0,0,1;RAW_MQandDP=329809,92;VarDP=74 GT:AD:DP:GQ:PL:SB 1/1:0,74,0:74:99:2225,220,0,2225,220,2225:0,0,29,45 +chrX 2206481 . G . . END=2206593 GT:DP:GQ:MIN_DP:PL 0/0:61:30:50:0,30,450 +chrX 2206594 . A . . END=2206637 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,0 +chrX 2206638 . A . . END=2206638 GT:DP:GQ:MIN_DP:PL 0/0:27:42:27:0,42,630 +chrX 2206639 . A . . END=2206640 GT:DP:GQ:MIN_DP:PL 0/0:29:0:29:0,0,0 +chrX 2206641 . G . . END=2206641 GT:DP:GQ:MIN_DP:PL 0/0:28:45:28:0,45,675 +chrX 2206642 . A . . END=2206649 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,0 +chrX 2206650 . A . . END=2206650 GT:DP:GQ:MIN_DP:PL 0/0:30:57:30:0,57,855 +chrX 2206651 . A . . END=2206652 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,0 +chrX 2206653 . G . . END=2206653 GT:DP:GQ:MIN_DP:PL 0/0:30:63:30:0,63,945 +chrX 2206654 . A . . END=2206661 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,0 +chrX 2206662 . A . . END=2206663 GT:DP:GQ:MIN_DP:PL 0/0:30:20:30:0,20,812 +chrX 2206664 . G . . END=2206664 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,0 +chrX 2206665 . G . . END=2206665 GT:DP:GQ:MIN_DP:PL 0/0:30:75:30:0,75,1125 +chrX 2206666 . A . . END=2206671 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,0 +chrX 2206672 . G . . END=2206672 GT:DP:GQ:MIN_DP:PL 0/0:30:55:30:0,55,923 +chrX 2206673 . G . . END=2206673 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,843 +chrX 2206674 . A . . END=2206675 GT:DP:GQ:MIN_DP:PL 0/0:32:47:32:0,47,953 +chrX 2206676 . G . . END=2206676 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,0 +chrX 2206677 . G . . END=2206677 GT:DP:GQ:MIN_DP:PL 0/0:29:87:29:0,87,958 +chrX 2206678 . A . . END=2206680 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,0 +chrX 2206681 . G . . END=2206683 GT:DP:GQ:MIN_DP:PL 0/0:31:41:31:0,41,875 +chrX 2206684 . A . . END=2206685 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,0 +chrX 2206686 . G . . END=2207096 GT:DP:GQ:MIN_DP:PL 0/0:43:58:43:0,58,941 +chrX 2207097 . A G, 1471.06 . AS_QUALapprox=|1485|0;AS_VarDP=0|46|0;DP=47;QUALapprox=1485;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1485,137,0,1485,137,1485:0,0,29,17 +chrX 2207098 . T . . END=2207231 GT:DP:GQ:MIN_DP:PL 0/0:47:95:47:0,95,1230 +chrX 2207232 . CAA C,CA, 1518.02 . AS_QUALapprox=|999|1352|0;AS_VarDP=0|11|24|0;DP=51;QUALapprox=1535;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180761,51;VarDP=35 GT:AD:DP:GQ:PL:SB 1/2:0,11,24,0:35:99:1535,624,536,310,0,183,1265,627,306,1181:0,0,21,14 +chrX 2207235 . A . . END=2207244 GT:DP:GQ:MIN_DP:PL 0/0:51:87:51:0,87,1305 +chrX 2207245 . A . . END=2207245 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1247 +chrX 2207246 . A . . END=2207246 GT:DP:GQ:MIN_DP:PL 0/0:53:65:53:0,65,1543 +chrX 2207247 . A C, 1962.06 . AS_QUALapprox=|1976|0;AS_VarDP=0|53|0;DP=56;QUALapprox=1976;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198761,56;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1976,158,0,1976,158,1976:0,0,29,24 +chrX 2207248 . A . . END=2207253 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,111,1665 +chrX 2207254 . A . . END=2207277 GT:DP:GQ:MIN_DP:PL 0/0:54:0:54:0,0,963 +chrX 2207278 . T . . END=2207295 GT:DP:GQ:MIN_DP:PL 0/0:60:61:60:0,61,1656 +chrX 2207296 . T TGC, 611.60 . AS_QUALapprox=|619|0;AS_VarDP=28|25|0;BaseQRankSum=1.115;DP=72;MQRankSum=0.664;QUALapprox=619;RAW_GT_COUNT=0,1,0;RAW_MQandDP=247114,72;ReadPosRankSum=-0.009;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:28,25,0:53:99:619,0,1079,703,1153,1857:15,13,13,12 +chrX 2207297 . G . . END=2207299 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,100,1985 +chrX 2207300 . T TGC, 670.60 . AS_QUALapprox=|678|0;AS_VarDP=26|26|0;BaseQRankSum=0.335;DP=72;MQRankSum=-0.775;QUALapprox=678;RAW_GT_COUNT=0,1,0;RAW_MQandDP=247114,72;ReadPosRankSum=-0.907;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:26,26,0:52:99:678,0,939,756,1016,1772:14,12,13,13 +chrX 2207301 . G . . END=2207305 GT:DP:GQ:MIN_DP:PL 0/0:69:94:69:0,94,1900 +chrX 2207306 . T TGC,TGTGTGTGTGC,TGTGC,TGTGTGTGTGTGC,TGTGTGTGTGTGTGC,TGTGTGTGTGTGTGTGC, 2513.02 . AS_QUALapprox=|654|1355|750|743|697|1583|0;AS_VarDP=0|0|20|1|1|0|23|0;DP=71;QUALapprox=2530;RAW_GT_COUNT=0,0,1;RAW_MQandDP=243514,71;VarDP=45 GT:AD:DP:GQ:PL:SB 2/6:0,0,20,1,1,0,23,0:45:99:2530,1967,1876,1282,1172,1175,1887,1611,869,1780,1885,1632,1082,1548,1787,1901,1697,940,1677,1487,1833,1025,761,0,984,728,956,947,2237,1930,1210,1858,1818,1878,1005,2196:0,0,22,23 +chrX 2207307 . G . . END=2207562 GT:DP:GQ:MIN_DP:PL 0/0:65:55:65:0,55,1800 +chrX 2207563 . A AT,ATT, 1447.03 . AS_QUALapprox=|1461|115|0;AS_VarDP=0|48|0|0;DP=61;QUALapprox=1461;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=48 GT:AD:DP:GQ:PL:SB 1/1:0,48,0,0:48:99:1461,156,0,1355,144,1346,1415,155,1357,1404:0,0,32,16 +chrX 2207564 . T . . END=2207591 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,117,1800 +chrX 2207592 . C T, 2016.06 . AS_QUALapprox=|2030|0;AS_VarDP=0|62|0;DP=64;QUALapprox=2030;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:0,62,0:62:99:2030,186,0,2030,186,2030:0,0,39,23 +chrX 2207593 . G . . END=2207651 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 2207652 . T C, 1912.06 . AS_QUALapprox=|1926|0;AS_VarDP=0|59|0;DP=61;QUALapprox=1926;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1926,177,0,1926,177,1926:0,0,29,30 +chrX 2207653 . G . . END=2207756 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 2207757 . G A, 2076.06 . AS_QUALapprox=|2090|0;AS_VarDP=0|62|0;DP=65;QUALapprox=2090;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:0,62,0:62:99:2090,186,0,2090,186,2090:0,0,19,43 +chrX 2207758 . C . . END=2208038 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,105,1375 +chrX 2208039 . G A, 544.64 . AS_QUALapprox=|552|0;AS_VarDP=21|20|0;BaseQRankSum=0.437;DP=42;MQRankSum=0.000;QUALapprox=552;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151200,42;ReadPosRankSum=-1.487;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:21,20,0:41:99:552,0,576,615,636,1251:10,11,11,9 +chrX 2208040 . A . . END=2208063 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,114,1432 +chrX 2208064 . T TCAC, 894.60 . AS_QUALapprox=|902|0;AS_VarDP=21|23|0;BaseQRankSum=-1.601;DP=47;MQRankSum=0.000;QUALapprox=902;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=-3.009;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:21,23,0:44:99:902,0,813,966,882,1848:9,12,14,9 +chrX 2208065 . C . . END=2208193 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,102,1349 +chrX 2208194 . G GA, 183.60 . AS_QUALapprox=|191|0;AS_VarDP=24|11|0;BaseQRankSum=-0.156;DP=48;MQRankSum=0.000;QUALapprox=191;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=1.967;VarDP=35 GT:AD:DP:GQ:PL:SB 0/1:24,11,0:35:99:191,0,951,264,984,1248:10,14,6,5 +chrX 2208195 . A . . END=2208201 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,102,1530 +chrX 2208202 . AAAAG A, 985.60 . AS_QUALapprox=|993|0;AS_VarDP=16|26|0;BaseQRankSum=1.909;DP=44;MQRankSum=0.000;QUALapprox=993;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=-0.737;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:16,26,0:42:99:993,0,541,1041,619,1660:8,8,12,14 +chrX 2208207 . A . . END=2208247 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,112,1301 +chrX 2208248 . C T, 495.64 . AS_QUALapprox=|503|0;AS_VarDP=28|21|0;BaseQRankSum=-1.448;DP=50;MQRankSum=0.000;QUALapprox=503;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=-1.819;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:28,21,0:49:99:503,0,761,587,824,1411:13,15,10,11 +chrX 2208249 . G . . END=2208410 GT:DP:GQ:MIN_DP:PL 0/0:50:80:50:0,80,1296 +chrX 2208411 . A T, 523.64 . AS_QUALapprox=|531|0;AS_VarDP=24|19|0;BaseQRankSum=2.342;DP=45;MQRankSum=0.000;QUALapprox=531;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=-0.832;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:24,19,0:43:99:531,0,645,603,702,1305:15,9,10,9 +chrX 2208412 . C . . END=2208545 GT:DP:GQ:MIN_DP:PL 0/0:47:98:47:0,98,1376 +chrX 2208546 . AT A, 1149.03 . AS_QUALapprox=|1163|0;AS_VarDP=0|41|0;DP=47;QUALapprox=1163;RAW_GT_COUNT=0,0,1;RAW_MQandDP=168849,47;VarDP=41 GT:AD:DP:GQ:PL:SB 1/1:0,41,0:41:99:1163,123,0,1163,123,1163:0,0,20,21 +chrX 2208548 . T . . END=2208707 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,103,1322 +chrX 2208708 . T C, 765.64 . AS_QUALapprox=|773|0;AS_VarDP=29|30|0;BaseQRankSum=-1.420;DP=60;MQRankSum=-2.000;QUALapprox=773;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208451,60;ReadPosRankSum=0.350;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:29,30,0:59:99:773,0,769,861,859,1720:11,18,10,20 +chrX 2208709 . G . . END=2208790 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,115,1598 +chrX 2208791 . A C, 1662.06 . AS_QUALapprox=|1676|0;AS_VarDP=0|52|0;DP=54;QUALapprox=1676;RAW_GT_COUNT=0,0,1;RAW_MQandDP=193936,54;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1676,156,0,1676,156,1676:0,0,19,33 +chrX 2208792 . G . . END=2208956 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,113,1558 +chrX 2208957 . C G, 1994.06 . AS_QUALapprox=|2008|0;AS_VarDP=0|51|0;DP=51;QUALapprox=2008;RAW_GT_COUNT=0,0,1;RAW_MQandDP=182809,51;VarDP=51 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,51,0:51:99:0|1:2208957_C_G:2008,153,0,2008,153,2008:2208957:0,0,33,18 +chrX 2208958 . G . . END=2208964 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 2208965 . T C, 779.64 . AS_QUALapprox=|787|0;AS_VarDP=24|28|0;BaseQRankSum=0.265;DP=55;MQRankSum=1.119;QUALapprox=787;RAW_GT_COUNT=0,1,0;RAW_MQandDP=197209,55;ReadPosRankSum=-0.312;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,28,0:52:99:0|1:2208957_C_G:787,0,631,859,715,1574:2208957:18,6,16,12 +chrX 2208966 . C . . END=2209155 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,118,1800 +chrX 2209156 . C T, 2764.06 . AS_QUALapprox=|2778|0;AS_VarDP=0|64|0;DP=64;QUALapprox=2778;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=64 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,64,0:64:99:0|1:2209156_C_T:2778,193,0,2778,193,2778:2209156:0,0,28,36 +chrX 2209157 . C . . END=2209161 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 2209162 . TGG T, 2771.03 . AS_QUALapprox=|2785|0;AS_VarDP=0|64|0;DP=65;QUALapprox=2785;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=64 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,64,0:64:99:0|1:2209156_C_T:2785,193,0,2785,193,2785:2209156:0,0,27,37 +chrX 2209165 . G . . END=2209222 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 2209223 . AG A, 752.60 . AS_QUALapprox=|760|0;AS_VarDP=39|21|0;BaseQRankSum=1.338;DP=62;MQRankSum=0.000;QUALapprox=760;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=-0.507;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:39,21,0:60:99:0|1:2209223_AG_A:760,0,1535,877,1599,2476:2209223:15,24,6,15 +chrX 2209225 . T . . END=2209230 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 2209231 . AT A, 812.60 . AS_QUALapprox=|820|0;AS_VarDP=40|23|0;BaseQRankSum=1.741;DP=67;MQRankSum=0.000;QUALapprox=820;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=-1.255;VarDP=63 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:40,23,0:63:99:0|1:2209223_AG_A:820,0,1545,941,1614,2555:2209223:14,26,7,16 +chrX 2209233 . T . . END=2209358 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 2209359 . ATT A,AT, 1107.02 . AS_QUALapprox=|728|664|0;AS_VarDP=0|22|17|0;DP=55;QUALapprox=1124;RAW_GT_COUNT=0,0,1;RAW_MQandDP=196516,55;VarDP=39 GT:AD:DP:GQ:PL:SB 1/2:0,22,17,0:39:99:1124,396,400,568,0,460,1063,435,559,1055:0,0,23,16 +chrX 2209362 . T . . END=2209538 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,106,1407 +chrX 2209539 . G A, 1810.06 . AS_QUALapprox=|1824|0;AS_VarDP=0|54|0;DP=55;QUALapprox=1824;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:1824,162,0,1824,162,1824:0,0,25,29 +chrX 2209540 . A . . END=2209569 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 2209570 . C T, 678.64 . AS_QUALapprox=|686|0;AS_VarDP=34|27|0;BaseQRankSum=0.124;DP=62;MQRankSum=0.000;QUALapprox=686;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=-0.131;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:34,27,0:61:99:686,0,893,787,975,1762:16,18,12,15 +chrX 2209571 . A . . END=2209601 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 2209602 . C T, 1718.06 . AS_QUALapprox=|1732|0;AS_VarDP=0|54|0;DP=55;QUALapprox=1732;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:1732,162,0,1732,162,1732:0,0,25,29 +chrX 2209603 . A . . END=2210000 GT:DP:GQ:MIN_DP:PL 0/0:56:70:56:0,70,1103 +chrX 2210001 . C CA, 623.60 . AS_QUALapprox=|631|0;AS_VarDP=19|27|0;BaseQRankSum=-1.356;DP=47;MQRankSum=0.000;QUALapprox=631;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=1.161;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:19,27,0:46:99:631,0,406,688,487,1175:10,9,15,12 +chrX 2210002 . A . . END=2210207 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,118,1592 +chrX 2210208 . G A, 857.64 . AS_QUALapprox=|865|0;AS_VarDP=37|32|0;BaseQRankSum=2.196;DP=70;MQRankSum=0.000;QUALapprox=865;RAW_GT_COUNT=0,1,0;RAW_MQandDP=252000,70;ReadPosRankSum=2.046;VarDP=69 GT:AD:DP:GQ:PL:SB 0/1:37,32,0:69:99:865,0,934,975,1030,2005:13,24,15,17 +chrX 2210209 . T . . END=2210327 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 2210328 . T C, 658.64 . AS_QUALapprox=|666|0;AS_VarDP=33|26|0;BaseQRankSum=0.374;DP=61;MQRankSum=0.000;QUALapprox=666;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=0.825;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:33,26,0:59:99:666,0,880,765,958,1722:13,20,17,9 +chrX 2210329 . T . . END=2210808 GT:DP:GQ:MIN_DP:PL 0/0:55:92:55:0,92,1364 +chrX 2210809 . C T, 915.64 . AS_QUALapprox=|923|0;AS_VarDP=25|33|0;BaseQRankSum=-0.263;DP=59;MQRankSum=0.000;QUALapprox=923;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-0.291;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:25,33,0:58:99:923,0,650,998,749,1747:14,11,15,18 +chrX 2210810 . G . . END=2210869 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 2210870 . C CAA, 2516.03 . AS_QUALapprox=|2530|0;AS_VarDP=0|57|0;DP=60;QUALapprox=2530;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:2530,171,0,2530,172,2530:0,0,33,24 +chrX 2210871 . A . . END=2210962 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,109,1717 +chrX 2210963 . A G, 1644.06 . AS_QUALapprox=|1658|0;AS_VarDP=0|50|0;DP=52;QUALapprox=1658;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1658,150,0,1658,150,1658:0,0,25,25 +chrX 2210964 . C . . END=2211243 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,100,1623 +chrX 2211244 . A . . END=2211244 GT:DP:GQ:MIN_DP:PL 0/0:64:18:64:0,18,1735 +chrX 2211245 . A . . END=2211247 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 2211248 . G GATGGATGGATGA, 2104.03 . AS_QUALapprox=|2118|0;AS_VarDP=0|49|0;DP=58;QUALapprox=2118;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:2118,146,0,2119,147,2120:0,0,22,27 +chrX 2211249 . A . . END=2211286 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,116,1659 +chrX 2211287 . G GGATGGATA, 2031.03 . AS_QUALapprox=|2045|0;AS_VarDP=0|46|0;DP=49;QUALapprox=2045;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,46,0:46:99:0|1:2211287_G_GGATGGATA:2045,138,0,2045,138,2045:2211287:0,0,22,24 +chrX 2211288 . G . . END=2211315 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,120,1800 +chrX 2211316 . A C, 2113.06 . AS_QUALapprox=|2127|0;AS_VarDP=0|52|0;DP=52;QUALapprox=2127;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,52,0:52:99:0|1:2211287_G_GGATGGATA:2127,156,0,2127,156,2127:2211287:0,0,25,27 +chrX 2211317 . C . . END=2211437 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,119,1738 +chrX 2211438 . T A, 2001.06 . AS_QUALapprox=|2015|0;AS_VarDP=0|61|0;DP=64;QUALapprox=2015;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=61 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:2015,183,0,2015,183,2015:0,0,36,25 +chrX 2211439 . C . . END=2211502 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 2211503 . A G, 528.64 . AS_QUALapprox=|536|0;AS_VarDP=34|22|0;BaseQRankSum=-2.650;DP=63;MQRankSum=0.000;QUALapprox=536;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=0.571;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:34,22,0:56:99:536,0,1004,639,1070,1708:17,17,15,7 +chrX 2211504 . G . . END=2211564 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 2211565 . A G, 2144.06 . AS_QUALapprox=|2158|0;AS_VarDP=0|66|0;DP=67;QUALapprox=2158;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=66 GT:AD:DP:GQ:PL:SB 1/1:0,66,0:66:99:2158,197,0,2158,197,2158:0,0,28,38 +chrX 2211566 . G . . END=2211677 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 2211678 . A G, 1658.06 . AS_QUALapprox=|1672|0;AS_VarDP=0|53|0;DP=55;QUALapprox=1672;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1672,158,0,1672,158,1672:0,0,30,23 +chrX 2211679 . T . . END=2211742 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,119,1559 +chrX 2211743 . C T, 605.64 . AS_QUALapprox=|613|0;AS_VarDP=28|24|0;BaseQRankSum=-1.442;DP=53;MQRankSum=0.000;QUALapprox=613;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=-0.055;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:28,24,0:52:99:613,0,796,697,868,1565:16,12,11,13 +chrX 2211744 . C . . END=2211887 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 2211888 . G C, 601.64 . AS_QUALapprox=|609|0;AS_VarDP=29|23|0;BaseQRankSum=0.216;DP=54;MQRankSum=0.000;QUALapprox=609;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=-0.663;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:29,23,0:52:99:609,0,807,696,876,1572:16,13,10,13 +chrX 2211889 . T . . END=2211990 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 2211991 . CA C, 326.60 . AS_QUALapprox=|334|0;AS_VarDP=32|19|0;BaseQRankSum=1.137;DP=61;MQRankSum=3.380;QUALapprox=334;RAW_GT_COUNT=0,1,0;RAW_MQandDP=199586,61;ReadPosRankSum=-1.050;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:32,19,0:51:99:334,0,1202,431,1259,1690:18,14,14,5 +chrX 2211993 . A . . END=2212005 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 2212006 . AT A, 1458.60 . AS_QUALapprox=|1466|0;AS_VarDP=22|38|0;BaseQRankSum=-0.950;DP=63;MQRankSum=-4.319;QUALapprox=1466;RAW_GT_COUNT=0,1,0;RAW_MQandDP=200514,63;ReadPosRankSum=0.706;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,38,0:60:99:0|1:2212006_AT_A:1466,0,779,1532,893,2425:2212006:15,7,23,15 +chrX 2212008 . T . . END=2212018 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 2212019 . G A, 1518.64 . AS_QUALapprox=|1526|0;AS_VarDP=27|41|0;BaseQRankSum=-1.542;DP=68;MQRankSum=-5.389;QUALapprox=1526;RAW_GT_COUNT=0,1,0;RAW_MQandDP=214283,68;ReadPosRankSum=1.319;VarDP=68 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,41,0:68:99:0|1:2212006_AT_A:1526,0,889,1607,1013,2620:2212006:17,10,24,17 +chrX 2212020 . G . . END=2212048 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 2212049 . G A, 1141.64 . AS_QUALapprox=|1149|0;AS_VarDP=22|43|0;BaseQRankSum=-0.856;DP=66;MQRankSum=-4.948;QUALapprox=1149;RAW_GT_COUNT=0,1,0;RAW_MQandDP=206187,66;ReadPosRankSum=-1.248;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:22,43,0:65:99:1149,0,505,1215,634,1849:12,10,21,22 +chrX 2212050 . G . . END=2212086 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 2212087 . C T, 938.64 . AS_QUALapprox=|946|0;AS_VarDP=29|36|0;BaseQRankSum=1.265;DP=66;MQRankSum=-4.727;QUALapprox=946;RAW_GT_COUNT=0,1,0;RAW_MQandDP=215801,66;ReadPosRankSum=0.805;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:29,36,0:65:99:946,0,668,1032,776,1808:14,15,17,19 +chrX 2212088 . G . . END=2212133 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 2212134 . C T, 952.64 . AS_QUALapprox=|960|0;AS_VarDP=29|35|0;BaseQRankSum=1.839;DP=69;MQRankSum=-3.965;QUALapprox=960;RAW_GT_COUNT=0,1,0;RAW_MQandDP=231849,69;ReadPosRankSum=-0.560;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:29,35,0:64:99:960,0,701,1046,806,1852:10,19,16,19 +chrX 2212135 . G . . END=2212174 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 2212175 . A T, 701.64 . AS_QUALapprox=|709|0;AS_VarDP=32|26|0;BaseQRankSum=-0.196;DP=60;MQRankSum=0.000;QUALapprox=709;RAW_GT_COUNT=0,1,0;RAW_MQandDP=215104,60;ReadPosRankSum=0.806;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:32,26,0:58:99:709,0,910,806,989,1794:16,16,13,13 +chrX 2212176 . T . . END=2212803 GT:DP:GQ:MIN_DP:PL 0/0:61:88:61:0,88,1236 +chrX 2212804 . A C, 744.64 . AS_QUALapprox=|752|0;AS_VarDP=14|28|0;BaseQRankSum=-1.027;DP=46;MQRankSum=0.000;QUALapprox=752;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=0.814;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:14,28,0:42:99:752,0,341,794,425,1219:8,6,13,15 +chrX 2212805 . C . . END=2212848 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,108,1311 +chrX 2212849 . T . . END=2212849 GT:DP:GQ:MIN_DP:PL 0/0:50:18:50:0,18,1035 +chrX 2212850 . G . . END=2212906 GT:DP:GQ:MIN_DP:PL 0/0:47:90:47:0,90,1350 +chrX 2212907 . G A, 697.04 . AS_QUALapprox=|851|0;AS_VarDP=23|23|0;BaseQRankSum=-0.148;DP=46;MQRankSum=0.000;QUALapprox=851;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162441,46;ReadPosRankSum=1.006;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,23,0:46:99:0|1:2212907_G_A:851,0,876,811,941,1741:2212907:18,5,11,6 +chrX 2212908 . A . . END=2212916 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,99,1485 +chrX 2212917 . G A, 587.64 . AS_QUALapprox=|595|0;AS_VarDP=24|17|0;BaseQRankSum=0.300;DP=49;MQRankSum=0.000;QUALapprox=595;RAW_GT_COUNT=0,1,0;RAW_MQandDP=171577,49;ReadPosRankSum=0.712;VarDP=41 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,17,0:41:99:0|1:2212907_G_A:595,0,947,667,998,1665:2212907:20,4,11,6 +chrX 2212918 . A . . END=2212927 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,105,1405 +chrX 2212928 . A G, 599.64 . AS_QUALapprox=|607|0;AS_VarDP=20|17|0;BaseQRankSum=0.000;DP=45;MQRankSum=0.000;QUALapprox=607;RAW_GT_COUNT=0,1,0;RAW_MQandDP=157177,45;ReadPosRankSum=-0.823;VarDP=37 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:20,17,0:37:99:0|1:2212907_G_A:607,0,789,667,840,1507:2212907:17,3,11,6 +chrX 2212929 . A . . END=2212942 GT:DP:GQ:MIN_DP:PL 0/0:40:87:40:0,87,1197 +chrX 2212943 . G GGAAA,GGAAGGAAA, 809.60 . AS_QUALapprox=|817|139|0;AS_VarDP=17|17|0|0;BaseQRankSum=-1.393;DP=42;MQRankSum=0.000;QUALapprox=817;RAW_GT_COUNT=0,1,0;RAW_MQandDP=149536,42;ReadPosRankSum=-2.136;VarDP=34 GT:AD:DP:GQ:PL:SB 0/1:17,17,0,0:34:99:817,0,651,678,702,1383,782,714,1396,1483:16,1,11,6 +chrX 2212944 . G . . END=2213031 GT:DP:GQ:MIN_DP:PL 0/0:34:23:29:0,23,719 +chrX 2213032 . T . . END=2213032 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,669 +chrX 2213033 . G . . END=2213051 GT:DP:GQ:MIN_DP:PL 0/0:37:54:37:0,54,1021 +chrX 2213052 . G . . END=2213052 GT:DP:GQ:MIN_DP:PL 0/0:40:16:40:0,16,1132 +chrX 2213053 . G . . END=2213055 GT:DP:GQ:MIN_DP:PL 0/0:43:59:43:0,59,1234 +chrX 2213056 . G . . END=2213058 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,814 +chrX 2213059 . A . . END=2213059 GT:DP:GQ:MIN_DP:PL 0/0:45:66:45:0,66,1365 +chrX 2213060 . A . . END=2213060 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,1136 +chrX 2213061 . A . . END=2213067 GT:DP:GQ:MIN_DP:PL 0/0:46:79:46:0,79,1390 +chrX 2213068 . A . . END=2213068 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,1162 +chrX 2213069 . A . . END=2213073 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,113,1554 +chrX 2213074 . A . . END=2213079 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1285 +chrX 2213080 . G . . END=2213097 GT:DP:GQ:MIN_DP:PL 0/0:50:84:50:0,84,1486 +chrX 2213098 . C . . END=2213098 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,955 +chrX 2213099 . A . . END=2213099 GT:DP:GQ:MIN_DP:PL 0/0:46:69:46:0,69,1410 +chrX 2213100 . A . . END=2213100 GT:DP:GQ:MIN_DP:PL 0/0:46:19:46:0,19,1271 +chrX 2213101 . G . . END=2213133 GT:DP:GQ:MIN_DP:PL 0/0:39:25:32:0,25,719 +chrX 2213134 . A . . END=2213134 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,168 +chrX 2213135 . G . . END=2213178 GT:DP:GQ:MIN_DP:PL 0/0:23:39:20:0,39,580 +chrX 2213179 . G . . END=2213179 GT:DP:GQ:MIN_DP:PL 0/0:20:0:20:0,0,336 +chrX 2213180 . G . . END=2213192 GT:DP:GQ:MIN_DP:PL 0/0:20:28:18:0,28,546 +chrX 2213193 . A . . END=2213193 GT:DP:GQ:MIN_DP:PL 0/0:17:1:17:0,1,391 +chrX 2213194 . A . . END=2213194 GT:DP:GQ:MIN_DP:PL 0/0:18:48:18:0,48,720 +chrX 2213195 . A . . END=2213195 GT:DP:GQ:MIN_DP:PL 0/0:18:19:18:0,19,516 +chrX 2213196 . G . . END=2213199 GT:DP:GQ:MIN_DP:PL 0/0:19:28:18:0,28,542 +chrX 2213200 . A . . END=2213200 GT:DP:GQ:MIN_DP:PL 0/0:20:0:20:0,0,485 +chrX 2213201 . G . . END=2213202 GT:DP:GQ:MIN_DP:PL 0/0:19:22:19:0,22,540 +chrX 2213203 . A . . END=2213204 GT:DP:GQ:MIN_DP:PL 0/0:20:0:20:0,0,412 +chrX 2213205 . G . . END=2213232 GT:DP:GQ:MIN_DP:PL 0/0:16:25:14:0,25,387 +chrX 2213233 . G . . END=2213233 GT:DP:GQ:MIN_DP:PL 0/0:15:10:15:0,10,422 +chrX 2213234 . G . . END=2213235 GT:DP:GQ:MIN_DP:PL 0/0:15:36:15:0,36,540 +chrX 2213236 . A . . END=2213236 GT:DP:GQ:MIN_DP:PL 0/0:13:14:13:0,14,372 +chrX 2213237 . A . . END=2213259 GT:DP:GQ:MIN_DP:PL 0/0:12:22:11:0,22,318 +chrX 2213260 . A . . END=2213260 GT:DP:GQ:MIN_DP:PL 0/0:11:19:11:0,19,303 +chrX 2213261 . G . . END=2213270 GT:DP:GQ:MIN_DP:PL 0/0:11:21:10:0,21,315 +chrX 2213271 . A . . END=2213276 GT:DP:GQ:MIN_DP:PL 0/0:10:18:10:0,18,270 +chrX 2213277 . G . . END=2213277 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,315 +chrX 2213278 . A . . END=2213278 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,168 +chrX 2213279 . A . . END=2213283 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,223 +chrX 2213284 . G . . END=2213285 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,199 +chrX 2213286 . A . . END=2213286 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,223 +chrX 2213287 . G . . END=2213289 GT:DP:GQ:MIN_DP:PL 0/0:6:7:6:0,7,184 +chrX 2213290 . A . . END=2213293 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,203 +chrX 2213294 . A . . END=2213296 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,199 +chrX 2213297 . A . . END=2213299 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,213 +chrX 2213300 . G . . END=2213305 GT:DP:GQ:MIN_DP:PL 0/0:7:0:7:0,0,209 +chrX 2213306 . G . . END=2213315 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,315 +chrX 2213316 . G . . END=2213342 GT:DP:GQ:MIN_DP:PL 0/0:6:9:6:0,9,84 +chrX 2213343 . G . . END=2213345 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,202 +chrX 2213346 . G . . END=2213357 GT:DP:GQ:MIN_DP:PL 0/0:7:0:7:0,0,164 +chrX 2213358 . A . . END=2213360 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,223 +chrX 2213361 . A . . END=2213362 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,209 +chrX 2213363 . G . . END=2213363 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,243 +chrX 2213364 . A . . END=2213366 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,178 +chrX 2213367 . G . . END=2213367 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,315 +chrX 2213368 . A . . END=2213372 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,209 +chrX 2213373 . A . . END=2213373 GT:DP:GQ:MIN_DP:PL 0/0:9:27:9:0,27,313 +chrX 2213374 . A . . END=2213375 GT:DP:GQ:MIN_DP:PL 0/0:9:0:9:0,0,243 +chrX 2213376 . G . . END=2213376 GT:DP:GQ:MIN_DP:PL 0/0:10:30:10:0,30,348 +chrX 2213377 . G . . END=2213377 GT:DP:GQ:MIN_DP:PL 0/0:10:0:10:0,0,278 +chrX 2213378 . A . . END=2213378 GT:DP:GQ:MIN_DP:PL 0/0:10:30:10:0,30,327 +chrX 2213379 . A . . END=2213379 GT:DP:GQ:MIN_DP:PL 0/0:10:0:10:0,0,248 +chrX 2213380 . G . . END=2213380 GT:DP:GQ:MIN_DP:PL 0/0:9:27:9:0,27,303 +chrX 2213381 . G . . END=2213381 GT:DP:GQ:MIN_DP:PL 0/0:9:0:9:0,0,243 +chrX 2213382 . A . . END=2213382 GT:DP:GQ:MIN_DP:PL 0/0:10:30:10:0,30,327 +chrX 2213383 . A . . END=2213384 GT:DP:GQ:MIN_DP:PL 0/0:12:0:12:0,0,292 +chrX 2213385 . A . . END=2213398 GT:DP:GQ:MIN_DP:PL 0/0:12:27:11:0,27,405 +chrX 2213399 . G . . END=2213400 GT:DP:GQ:MIN_DP:PL 0/0:10:16:10:0,16,289 +chrX 2213401 . A . . END=2213403 GT:DP:GQ:MIN_DP:PL 0/0:11:30:11:0,30,348 +chrX 2213404 . T . . END=2213404 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,233 +chrX 2213405 . A . . END=2213414 GT:DP:GQ:MIN_DP:PL 0/0:13:22:12:0,22,358 +chrX 2213415 . A . . END=2213415 GT:DP:GQ:MIN_DP:PL 0/0:14:17:14:0,17,387 +chrX 2213416 . A . . END=2213425 GT:DP:GQ:MIN_DP:PL 0/0:13:33:13:0,33,342 +chrX 2213426 . A . . END=2213426 GT:DP:GQ:MIN_DP:PL 0/0:14:17:14:0,17,377 +chrX 2213427 . A . . END=2213435 GT:DP:GQ:MIN_DP:PL 0/0:14:36:12:0,36,356 +chrX 2213436 . G . . END=2213436 GT:DP:GQ:MIN_DP:PL 0/0:14:17:14:0,17,367 +chrX 2213437 . G . . END=2213437 GT:DP:GQ:MIN_DP:PL 0/0:13:39:13:0,39,392 +chrX 2213438 . A . . END=2213438 GT:DP:GQ:MIN_DP:PL 0/0:14:17:14:0,17,367 +chrX 2213439 . A . . END=2213441 GT:DP:GQ:MIN_DP:PL 0/0:14:39:13:0,39,401 +chrX 2213442 . A . . END=2213442 GT:DP:GQ:MIN_DP:PL 0/0:10:5:10:0,5,268 +chrX 2213443 . A . . END=2213462 GT:DP:GQ:MIN_DP:PL 0/0:13:24:12:0,24,297 +chrX 2213463 . A . . END=2213463 GT:DP:GQ:MIN_DP:PL 0/0:11:18:11:0,18,273 +chrX 2213464 . A . . END=2213466 GT:DP:GQ:MIN_DP:PL 0/0:12:22:12:0,22,318 +chrX 2213467 . A . . END=2213467 GT:DP:GQ:MIN_DP:PL 0/0:9:2:9:0,2,223 +chrX 2213468 . G . . END=2213474 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,182 +chrX 2213475 . A . . END=2213716 GT:DP:GQ:MIN_DP:PL 0/0:4:0:4:0,0,0 +chrX 2213717 . G . . END=2213752 GT:DP:GQ:MIN_DP:PL 0/0:10:21:7:0,21,213 +chrX 2213753 . A . . END=2213753 GT:DP:GQ:MIN_DP:PL 0/0:11:19:11:0,19,323 +chrX 2213754 . G . . END=2213754 GT:DP:GQ:MIN_DP:PL 0/0:10:27:10:0,27,405 +chrX 2213755 . T . . END=2213755 GT:DP:GQ:MIN_DP:PL 0/0:9:0:9:0,0,184 +chrX 2213756 . A . . END=2213835 GT:DP:GQ:MIN_DP:PL 0/0:12:21:10:0,21,282 +chrX 2213836 . A . . END=2213836 GT:DP:GQ:MIN_DP:PL 0/0:11:4:11:0,4,254 +chrX 2213837 . G . . END=2213846 GT:DP:GQ:MIN_DP:PL 0/0:10:27:9:0,27,293 +chrX 2213847 . A . . END=2213847 GT:DP:GQ:MIN_DP:PL 0/0:10:16:10:0,16,299 +chrX 2213848 . G . . END=2213853 GT:DP:GQ:MIN_DP:PL 0/0:10:21:10:0,21,315 +chrX 2213854 . G . . END=2213985 GT:DP:GQ:MIN_DP:PL 0/0:4:0:4:0,0,35 +chrX 2213986 . G . . END=2213989 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,203 +chrX 2213990 . G . . END=2214010 GT:DP:GQ:MIN_DP:PL 0/0:7:6:7:0,6,70 +chrX 2214011 . A . . END=2214014 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,315 +chrX 2214015 . A . . END=2214041 GT:DP:GQ:MIN_DP:PL 0/0:7:6:7:0,6,153 +chrX 2214042 . A . . END=2214047 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,223 +chrX 2214048 . G . . END=2214048 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,178 +chrX 2214049 . G . . END=2214049 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,315 +chrX 2214050 . G . . END=2214050 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,199 +chrX 2214051 . A . . END=2214057 GT:DP:GQ:MIN_DP:PL 0/0:9:24:9:0,24,238 +chrX 2214058 . A . . END=2214058 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,209 +chrX 2214059 . A . . END=2214077 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,203 +chrX 2214078 . A . . END=2214078 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,188 +chrX 2214079 . A . . END=2214083 GT:DP:GQ:MIN_DP:PL 0/0:9:24:9:0,24,273 +chrX 2214084 . A . . END=2214084 GT:DP:GQ:MIN_DP:PL 0/0:9:12:9:0,12,193 +chrX 2214085 . G . . END=2214101 GT:DP:GQ:MIN_DP:PL 0/0:12:21:9:0,21,213 +chrX 2214102 . A . . END=2214102 GT:DP:GQ:MIN_DP:PL 0/0:13:4:13:0,4,321 +chrX 2214103 . A . . END=2214176 GT:DP:GQ:MIN_DP:PL 0/0:11:22:9:0,22,268 +chrX 2214177 . G . . END=2214178 GT:DP:GQ:MIN_DP:PL 0/0:10:5:10:0,5,268 +chrX 2214179 . G . . END=2214190 GT:DP:GQ:MIN_DP:PL 0/0:10:24:9:0,24,268 +chrX 2214191 . A . . END=2214192 GT:DP:GQ:MIN_DP:PL 0/0:12:0:12:0,0,273 +chrX 2214193 . G . . END=2214193 GT:DP:GQ:MIN_DP:PL 0/0:11:33:11:0,33,362 +chrX 2214194 . A . . END=2214194 GT:DP:GQ:MIN_DP:PL 0/0:12:1:12:0,1,287 +chrX 2214195 . G . . END=2214197 GT:DP:GQ:MIN_DP:PL 0/0:12:33:12:0,33,352 +chrX 2214198 . A . . END=2214198 GT:DP:GQ:MIN_DP:PL 0/0:12:1:12:0,1,297 +chrX 2214199 . G . . END=2214199 GT:DP:GQ:MIN_DP:PL 0/0:11:33:11:0,33,382 +chrX 2214200 . G . . END=2214200 GT:DP:GQ:MIN_DP:PL 0/0:12:1:12:0,1,328 +chrX 2214201 . A . . END=2214201 GT:DP:GQ:MIN_DP:PL 0/0:12:36:12:0,36,397 +chrX 2214202 . A . . END=2214202 GT:DP:GQ:MIN_DP:PL 0/0:12:1:12:0,1,328 +chrX 2214203 . G . . END=2214210 GT:DP:GQ:MIN_DP:PL 0/0:13:27:12:0,27,405 +chrX 2214211 . G . . END=2214212 GT:DP:GQ:MIN_DP:PL 0/0:11:4:11:0,4,254 +chrX 2214213 . A . . END=2214221 GT:DP:GQ:MIN_DP:PL 0/0:11:27:11:0,27,405 +chrX 2214222 . A . . END=2214222 GT:DP:GQ:MIN_DP:PL 0/0:11:19:11:0,19,323 +chrX 2214223 . G . . END=2214227 GT:DP:GQ:MIN_DP:PL 0/0:10:24:10:0,24,360 +chrX 2214228 . A . . END=2214228 GT:DP:GQ:MIN_DP:PL 0/0:10:16:10:0,16,299 +chrX 2214229 . A . . END=2214233 GT:DP:GQ:MIN_DP:PL 0/0:11:24:10:0,24,360 +chrX 2214234 . G . . END=2214234 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,303 +chrX 2214235 . G . . END=2214237 GT:DP:GQ:MIN_DP:PL 0/0:11:27:11:0,27,405 +chrX 2214238 . A . . END=2214238 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,292 +chrX 2214239 . G . . END=2214251 GT:DP:GQ:MIN_DP:PL 0/0:9:24:9:0,24,282 +chrX 2214252 . G . . END=2214252 GT:DP:GQ:MIN_DP:PL 0/0:9:13:9:0,13,254 +chrX 2214253 . A . . END=2214253 GT:DP:GQ:MIN_DP:PL 0/0:11:30:11:0,30,450 +chrX 2214254 . A . . END=2214254 GT:DP:GQ:MIN_DP:PL 0/0:10:0:10:0,0,199 +chrX 2214255 . G . . END=2214267 GT:DP:GQ:MIN_DP:PL 0/0:11:24:11:0,24,303 +chrX 2214268 . A . . END=2214268 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,213 +chrX 2214269 . A . . END=2214271 GT:DP:GQ:MIN_DP:PL 0/0:9:24:9:0,24,252 +chrX 2214272 . G . . END=2214273 GT:DP:GQ:MIN_DP:PL 0/0:9:0:9:0,0,258 +chrX 2214274 . G . . END=2214281 GT:DP:GQ:MIN_DP:PL 0/0:11:21:11:0,21,315 +chrX 2214282 . G . . END=2214282 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,233 +chrX 2214283 . G . . END=2214292 GT:DP:GQ:MIN_DP:PL 0/0:10:24:10:0,24,258 +chrX 2214293 . A . . END=2214293 GT:DP:GQ:MIN_DP:PL 0/0:10:0:10:0,0,278 +chrX 2214294 . G . . END=2214296 GT:DP:GQ:MIN_DP:PL 0/0:10:24:10:0,24,360 +chrX 2214297 . A . . END=2214297 GT:DP:GQ:MIN_DP:PL 0/0:11:8:11:0,8,313 +chrX 2214298 . G . . END=2214308 GT:DP:GQ:MIN_DP:PL 0/0:10:27:9:0,27,292 +chrX 2214309 . G . . END=2214313 GT:DP:GQ:MIN_DP:PL 0/0:12:0:12:0,0,59 +chrX 2214314 . G . . END=2214315 GT:DP:GQ:MIN_DP:PL 0/0:13:36:13:0,36,411 +chrX 2214316 . A . . END=2214320 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,303 +chrX 2214321 . G . . END=2214335 GT:DP:GQ:MIN_DP:PL 0/0:19:25:17:0,25,446 +chrX 2214336 . A . . END=2214339 GT:DP:GQ:MIN_DP:PL 0/0:20:0:20:0,0,59 +chrX 2214340 . A . . END=2214344 GT:DP:GQ:MIN_DP:PL 0/0:23:44:23:0,44,576 +chrX 2214345 . G . . END=2214349 GT:DP:GQ:MIN_DP:PL 0/0:23:0:23:0,0,565 +chrX 2214350 . G . . END=2214596 GT:DP:GQ:MIN_DP:PL 0/0:57:43:57:0,43,698 +chrX 2214597 . A G, 582.64 . AS_QUALapprox=|590|0;AS_VarDP=30|26|0;BaseQRankSum=-1.410;DP=57;MQRankSum=0.000;QUALapprox=590;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=1.233;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:30,26,0:56:99:590,0,806,680,883,1562:15,15,18,8 +chrX 2214598 . G . . END=2214720 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,107,1619 +chrX 2214721 . G A, 868.64 . AS_QUALapprox=|876|0;AS_VarDP=29|33|0;BaseQRankSum=-0.788;DP=65;MQRankSum=0.000;QUALapprox=876;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=-0.176;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:29,33,0:62:99:876,0,781,963,880,1843:14,15,17,16 +chrX 2214722 . T . . END=2214761 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 2214762 . C T, 883.64 . AS_QUALapprox=|891|0;AS_VarDP=29|33|0;BaseQRankSum=-0.670;DP=65;MQRankSum=0.000;QUALapprox=891;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=0.953;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:29,33,0:62:99:891,0,767,978,866,1844:12,17,17,16 +chrX 2214763 . T . . END=2214855 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 2214856 . C T, 832.64 . AS_QUALapprox=|840|0;AS_VarDP=29|30|0;BaseQRankSum=1.974;DP=61;MQRankSum=0.000;QUALapprox=840;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=0.690;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:29,30,0:59:99:840,0,771,927,861,1788:13,16,17,13 +chrX 2214857 . G . . END=2215258 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,101,1465 +chrX 2215259 . A G, 652.64 . AS_QUALapprox=|660|0;AS_VarDP=31|25|0;BaseQRankSum=-0.313;DP=59;MQRankSum=0.000;QUALapprox=660;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-1.501;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:31,25,0:56:99:660,0,869,754,944,1698:12,19,11,14 +chrX 2215260 . T . . END=2215394 GT:DP:GQ:MIN_DP:PL 0/0:58:95:58:0,95,1425 +chrX 2215395 . A . . END=2215395 GT:DP:GQ:MIN_DP:PL 0/0:40:16:40:0,16,1112 +chrX 2215396 . A . . END=2215397 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,117,1755 +chrX 2215398 . A . . END=2215398 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,1013 +chrX 2215399 . G . . END=2215749 GT:DP:GQ:MIN_DP:PL 0/0:53:29:44:0,29,1231 +chrX 2215750 . G C, 820.64 . AS_QUALapprox=|828|0;AS_VarDP=28|30|0;BaseQRankSum=0.820;DP=61;MQRankSum=0.761;QUALapprox=828;RAW_GT_COUNT=0,1,0;RAW_MQandDP=200045,61;ReadPosRankSum=-0.327;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:28,30,0:58:99:828,0,739,913,829,1742:9,19,16,14 +chrX 2215751 . A . . END=2217605 GT:DP:GQ:MIN_DP:PL 0/0:66:61:66:0,61,1295 +chrX 2217606 . G A, 656.64 . AS_QUALapprox=|664|0;AS_VarDP=23|24|0;BaseQRankSum=1.320;DP=48;MQRankSum=1.064;QUALapprox=664;RAW_GT_COUNT=0,1,0;RAW_MQandDP=170041,48;ReadPosRankSum=-0.192;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:23,24,0:47:99:664,0,554,732,626,1358:7,16,12,12 +chrX 2217607 . T . . END=2217773 GT:DP:GQ:MIN_DP:PL 0/0:47:96:47:0,96,1256 +chrX 2217774 . T C, 563.64 . AS_QUALapprox=|571|0;AS_VarDP=25|22|0;BaseQRankSum=-1.881;DP=48;MQRankSum=0.000;QUALapprox=571;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=0.469;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:25,22,0:47:99:571,0,716,647,782,1428:18,7,11,11 +chrX 2217775 . T . . END=2218373 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,119,1528 +chrX 2218374 . T C, 483.64 . AS_QUALapprox=|491|0;AS_VarDP=29|19|0;BaseQRankSum=2.003;DP=51;MQRankSum=0.000;QUALapprox=491;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=0.475;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:29,19,0:48:99:491,0,773,579,830,1409:12,17,7,12 +chrX 2218375 . G . . END=2218875 GT:DP:GQ:MIN_DP:PL 0/0:52:97:52:0,97,1361 +chrX 2218876 . G A, 893.64 . AS_QUALapprox=|901|0;AS_VarDP=25|32|0;BaseQRankSum=1.135;DP=61;MQRankSum=0.000;QUALapprox=901;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-2.695;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:25,32,0:57:99:901,0,638,976,734,1710:11,14,16,16 +chrX 2218877 . T . . END=2219725 GT:DP:GQ:MIN_DP:PL 0/0:53:67:53:0,67,1076 +chrX 2219726 . T G, 905.64 . AS_QUALapprox=|913|0;AS_VarDP=28|33|0;BaseQRankSum=1.616;DP=62;MQRankSum=0.000;QUALapprox=913;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=1.166;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:28,33,0:61:99:913,0,684,997,783,1780:12,16,14,19 +chrX 2219727 . G . . END=2220016 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 2220017 . A G, 876.64 . AS_QUALapprox=|884|0;AS_VarDP=19|32|0;BaseQRankSum=-0.787;DP=54;MQRankSum=0.000;QUALapprox=884;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=0.068;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:19,32,0:51:99:884,0,488,941,583,1525:13,6,14,18 +chrX 2220018 . A . . END=2220218 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,110,1508 +chrX 2220219 . C T, 1049.64 . AS_QUALapprox=|1057|0;AS_VarDP=27|39|0;BaseQRankSum=0.034;DP=66;MQRankSum=0.000;QUALapprox=1057;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=0.209;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:27,39,0:66:99:1057,0,670,1138,787,1925:13,14,16,23 +chrX 2220220 . G . . END=2221158 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,101,1663 +chrX 2221159 . T C, 523.64 . AS_QUALapprox=|531|0;AS_VarDP=36|22|0;BaseQRankSum=0.175;DP=59;MQRankSum=0.000;QUALapprox=531;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=0.625;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:36,22,0:58:99:531,0,947,639,1013,1652:14,22,16,6 +chrX 2221160 . G . . END=2221644 GT:DP:GQ:MIN_DP:PL 0/0:63:76:63:0,76,1439 +chrX 2221645 . A G, 787.64 . AS_QUALapprox=|795|0;AS_VarDP=24|30|0;BaseQRankSum=-0.265;DP=57;MQRankSum=0.000;QUALapprox=795;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=0.714;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:24,30,0:54:99:795,0,621,867,711,1578:12,12,18,12 +chrX 2221646 . T . . END=2222459 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 2222460 . T C, 700.64 . AS_QUALapprox=|708|0;AS_VarDP=32|26|0;BaseQRankSum=-1.558;DP=62;MQRankSum=0.000;QUALapprox=708;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=-0.751;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:32,26,0:58:99:708,0,938,804,1016,1820:11,21,13,13 +chrX 2222461 . T . . END=2223062 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 2223063 . A G, 689.64 . AS_QUALapprox=|697|0;AS_VarDP=28|29|0;BaseQRankSum=-1.451;DP=59;MQRankSum=0.000;QUALapprox=697;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=0.479;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:28,29,0:57:99:697,0,743,781,829,1610:17,11,17,12 +chrX 2223064 . G . . END=2223374 GT:DP:GQ:MIN_DP:PL 0/0:73:99:73:0,120,1800 +chrX 2223375 . A G, 1215.64 . AS_QUALapprox=|1223|0;AS_VarDP=39|46|0;BaseQRankSum=-1.508;DP=87;MQRankSum=0.000;QUALapprox=1223;RAW_GT_COUNT=0,1,0;RAW_MQandDP=313200,87;ReadPosRankSum=-0.018;VarDP=85 GT:AD:DP:GQ:PL:SB 0/1:39,46,0:85:99:1223,0,1050,1340,1188,2529:14,25,24,22 +chrX 2223376 . T . . END=2224253 GT:DP:GQ:MIN_DP:PL 0/0:73:99:73:0,120,1800 +chrX 2224254 . AG A, 945.60 . AS_QUALapprox=|953|0;AS_VarDP=32|25|0;BaseQRankSum=-0.555;DP=61;MQRankSum=0.000;QUALapprox=953;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=0.322;VarDP=57 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:32,25,0:57:99:0|1:2224254_AG_A:953,0,1268,1050,1344,2393:2224254:9,23,13,12 +chrX 2224256 . G A, 945.64 . AS_QUALapprox=|953|0;AS_VarDP=32|25|0;BaseQRankSum=-0.777;DP=58;MQRankSum=0.000;QUALapprox=953;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=0.378;VarDP=57 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:32,25,0:57:99:0|1:2224254_AG_A:953,0,1268,1050,1344,2393:2224254:9,23,13,12 +chrX 2224257 . C . . END=2224257 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 2224258 . C T, 945.64 . AS_QUALapprox=|953|0;AS_VarDP=32|25|0;BaseQRankSum=2.630;DP=58;MQRankSum=0.000;QUALapprox=953;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=0.522;VarDP=57 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:32,25,0:57:99:0|1:2224254_AG_A:953,0,1268,1050,1344,2393:2224254:9,23,13,12 +chrX 2224259 . G . . END=2224447 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 2224448 . G A, 987.64 . AS_QUALapprox=|995|0;AS_VarDP=22|35|0;BaseQRankSum=-0.054;DP=58;MQRankSum=0.000;QUALapprox=995;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-1.681;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:22,35,0:57:99:995,0,563,1061,669,1729:11,11,17,18 +chrX 2224449 . T . . END=2224733 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,119,1710 +chrX 2224734 . A G, 939.64 . AS_QUALapprox=|947|0;AS_VarDP=27|28|0;BaseQRankSum=-1.272;DP=55;MQRankSum=0.000;QUALapprox=947;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-3.401;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,28,0:55:99:0|1:2224734_A_G:947,0,978,1028,1062,2090:2224734:15,12,15,13 +chrX 2224735 . C . . END=2224749 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 2224750 . T C, 854.64 . AS_QUALapprox=|862|0;AS_VarDP=28|24|0;BaseQRankSum=1.993;DP=52;MQRankSum=0.000;QUALapprox=862;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=-1.770;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,24,0:52:99:0|1:2224734_A_G:862,0,1022,947,1094,2041:2224734:14,14,13,11 +chrX 2224751 . T . . END=2224864 GT:DP:GQ:MIN_DP:PL 0/0:50:79:50:0,79,1251 +chrX 2224865 . T C, 675.64 . AS_QUALapprox=|683|0;AS_VarDP=27|25|0;BaseQRankSum=-1.091;DP=54;MQRankSum=0.000;QUALapprox=683;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=1.054;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:27,25,0:52:99:683,0,772,764,847,1611:14,13,15,10 +chrX 2224866 . G . . END=2224964 GT:DP:GQ:MIN_DP:PL 0/0:58:20:56:0,20,1429 +chrX 2224965 . C CACAT, 972.60 . AS_QUALapprox=|980|0;AS_VarDP=37|26|0;BaseQRankSum=1.095;DP=68;MQRankSum=0.000;QUALapprox=980;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=-0.203;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:37,26,0:63:99:980,0,1476,1092,1554,2646:20,17,10,16 +chrX 2224966 . A . . END=2225135 GT:DP:GQ:MIN_DP:PL 0/0:72:67:72:0,67,1470 +chrX 2225136 . T . . END=2225136 GT:DP:GQ:MIN_DP:PL 0/0:58:16:58:0,16,1480 +chrX 2225137 . C . . END=2225145 GT:DP:GQ:MIN_DP:PL 0/0:57:40:57:0,40,1467 +chrX 2225146 . G . . END=2225146 GT:DP:GQ:MIN_DP:PL 0/0:55:0:55:0,0,1212 +chrX 2225147 . T . . END=2225294 GT:DP:GQ:MIN_DP:PL 0/0:57:27:55:0,27,1234 +chrX 2225295 . TACAC T, 1017.60 . AS_QUALapprox=|1025|0;AS_VarDP=34|27|0;BaseQRankSum=0.890;DP=66;MQRankSum=0.000;QUALapprox=1025;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=-2.230;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:34,27,0:61:99:1025,0,1235,1124,1316,2440:18,16,13,14 +chrX 2225300 . A . . END=2225823 GT:DP:GQ:MIN_DP:PL 0/0:72:29:65:0,29,1800 +chrX 2225824 . C T, 726.64 . AS_QUALapprox=|734|0;AS_VarDP=41|31|0;BaseQRankSum=-0.337;DP=73;MQRankSum=1.814;QUALapprox=734;RAW_GT_COUNT=0,1,0;RAW_MQandDP=250766,73;ReadPosRankSum=1.371;VarDP=72 GT:AD:DP:GQ:PL:SB 0/1:41,31,0:72:99:734,0,1070,855,1161,2016:13,28,16,15 +chrX 2225825 . C . . END=2226118 GT:DP:GQ:MIN_DP:PL 0/0:68:97:68:0,97,1746 +chrX 2226119 . G T, 885.64 . AS_QUALapprox=|893|0;AS_VarDP=27|31|0;BaseQRankSum=2.210;DP=58;MQRankSum=0.000;QUALapprox=893;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=0.702;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:27,31,0:58:99:893,0,703,974,796,1771:15,12,12,19 +chrX 2226120 . T . . END=2226180 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 2226181 . T C, 1036.64 . AS_QUALapprox=|1044|0;AS_VarDP=29|28|0;BaseQRankSum=-0.849;DP=58;MQRankSum=0.000;QUALapprox=1044;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=1.600;VarDP=57 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,28,0:57:99:0|1:2226181_T_C:1044,0,1132,1132,1216,2348:2226181:15,14,12,16 +chrX 2226182 . G . . END=2226183 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 2226184 . C T, 1005.64 . AS_QUALapprox=|1013|0;AS_VarDP=29|27|0;BaseQRankSum=-0.121;DP=56;MQRankSum=0.000;QUALapprox=1013;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=1.329;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,27,0:56:99:0|1:2226181_T_C:1013,0,1135,1100,1216,2317:2226181:15,14,12,15 +chrX 2226185 . G . . END=2226575 GT:DP:GQ:MIN_DP:PL 0/0:52:97:52:0,97,1250 +chrX 2226576 . G A, 452.64 . AS_QUALapprox=|460|0;AS_VarDP=19|18|0;BaseQRankSum=0.304;DP=38;MQRankSum=0.000;QUALapprox=460;RAW_GT_COUNT=0,1,0;RAW_MQandDP=135601,38;ReadPosRankSum=-0.456;VarDP=37 GT:AD:DP:GQ:PL:SB 0/1:19,18,0:37:99:460,0,484,517,537,1054:9,10,10,8 +chrX 2226577 . G . . END=2226694 GT:DP:GQ:MIN_DP:PL 0/0:39:62:39:0,62,1067 +chrX 2226695 . G GGAAGCT, 763.60 . AS_QUALapprox=|771|0;AS_VarDP=19|20|0;BaseQRankSum=1.331;DP=43;MQRankSum=-2.001;QUALapprox=771;RAW_GT_COUNT=0,1,0;RAW_MQandDP=145855,43;ReadPosRankSum=-1.279;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:19,20,0:39:99:771,0,738,828,798,1626:14,5,7,13 +chrX 2226696 . G . . END=2227344 GT:DP:GQ:MIN_DP:PL 0/0:56:66:56:0,66,1273 +chrX 2227345 . G A, 891.64 . AS_QUALapprox=|899|0;AS_VarDP=26|24|0;BaseQRankSum=2.304;DP=54;MQRankSum=-1.001;QUALapprox=899;RAW_GT_COUNT=0,1,0;RAW_MQandDP=193716,54;ReadPosRankSum=-0.470;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,24,0:50:99:0|1:2227345_G_A:899,0,954,977,1026,2003:2227345:15,11,10,14 +chrX 2227346 . A . . END=2227357 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 2227358 . G A, 902.64 . AS_QUALapprox=|910|0;AS_VarDP=26|24|0;BaseQRankSum=2.481;DP=51;MQRankSum=0.000;QUALapprox=910;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=0.039;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,24,0:50:99:0|1:2227345_G_A:910,0,941,987,1013,2000:2227345:13,13,12,12 +chrX 2227359 . A . . END=2227431 GT:DP:GQ:MIN_DP:PL 0/0:47:33:43:0,33,1027 +chrX 2227432 . T . . END=2227432 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,676 +chrX 2227433 . G . . END=2227631 GT:DP:GQ:MIN_DP:PL 0/0:30:30:28:0,30,540 +chrX 2227632 . C . . END=2227632 GT:DP:GQ:MIN_DP:PL 0/0:21:19:21:0,19,532 +chrX 2227633 . A . . END=2227708 GT:DP:GQ:MIN_DP:PL 0/0:17:20:11:0,20,315 +chrX 2227709 . G . . END=2227729 GT:DP:GQ:MIN_DP:PL 0/0:9:0:9:0,0,129 +chrX 2227730 . G . . END=2227732 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,315 +chrX 2227733 . A . . END=2227733 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,168 +chrX 2227734 . G . . END=2227734 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,315 +chrX 2227735 . G . . END=2227736 GT:DP:GQ:MIN_DP:PL 0/0:10:0:10:0,0,174 +chrX 2227737 . A . . END=2227739 GT:DP:GQ:MIN_DP:PL 0/0:10:21:10:0,21,315 +chrX 2227740 . G . . END=2227742 GT:DP:GQ:MIN_DP:PL 0/0:10:0:10:0,0,188 +chrX 2227743 . G . . END=2227745 GT:DP:GQ:MIN_DP:PL 0/0:10:21:10:0,21,315 +chrX 2227746 . T . . END=2228297 GT:DP:GQ:MIN_DP:PL 0/0:1:0:1:0,0,0 +chrX 2228298 . A . . END=2228300 GT:DP:GQ:MIN_DP:PL 0/0:8:24:8:0,24,238 +chrX 2228301 . G . . END=2228301 GT:DP:GQ:MIN_DP:PL 0/0:9:0:9:0,0,144 +chrX 2228302 . A . . END=2228304 GT:DP:GQ:MIN_DP:PL 0/0:9:27:9:0,27,273 +chrX 2228305 . G . . END=2228305 GT:DP:GQ:MIN_DP:PL 0/0:9:0:9:0,0,104 +chrX 2228306 . A . . END=2228308 GT:DP:GQ:MIN_DP:PL 0/0:9:24:9:0,24,360 +chrX 2228309 . G . . END=2228309 GT:DP:GQ:MIN_DP:PL 0/0:7:0:7:0,0,154 +chrX 2228310 . A . . END=2228316 GT:DP:GQ:MIN_DP:PL 0/0:10:24:10:0,24,360 +chrX 2228317 . G . . END=2228317 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,189 +chrX 2228318 . A . . END=2228323 GT:DP:GQ:MIN_DP:PL 0/0:10:21:10:0,21,315 +chrX 2228324 . G . . END=2228324 GT:DP:GQ:MIN_DP:PL 0/0:10:16:10:0,16,238 +chrX 2228325 . G . . END=2228328 GT:DP:GQ:MIN_DP:PL 0/0:10:24:10:0,24,238 +chrX 2228329 . G . . END=2228336 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,218 +chrX 2228337 . A . . END=2228337 GT:DP:GQ:MIN_DP:PL 0/0:11:21:11:0,21,315 +chrX 2228338 . A . . END=2228411 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,0 +chrX 2228412 . G . . END=2228428 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,238 +chrX 2228429 . AAGGG A, 64.60 . AS_QUALapprox=|72|0;AS_VarDP=4|2|0;BaseQRankSum=0.000;DP=11;MQRankSum=0.000;QUALapprox=72;RAW_GT_COUNT=0,1,0;RAW_MQandDP=25285,11;ReadPosRankSum=0.000;VarDP=6 GT:AD:DP:GQ:PL:SB 0/1:4,2,0:6:72:72,0,125,84,132,216:4,0,2,0 +chrX 2228434 . A . . END=2228449 GT:DP:GQ:MIN_DP:PL 0/0:11:21:10:0,21,278 +chrX 2228450 . A . . END=2228453 GT:DP:GQ:MIN_DP:PL 0/0:15:0:15:0,0,298 +chrX 2228454 . G . . END=2228457 GT:DP:GQ:MIN_DP:PL 0/0:17:42:17:0,42,447 +chrX 2228458 . G . . END=2228458 GT:DP:GQ:MIN_DP:PL 0/0:17:12:17:0,12,462 +chrX 2228459 . A . . END=2229935 GT:DP:GQ:MIN_DP:PL 0/0:33:29:23:0,29,555 +chrX 2229936 . T C, 921.64 . AS_QUALapprox=|929|0;AS_VarDP=38|36|0;BaseQRankSum=-0.215;DP=76;MQRankSum=0.000;QUALapprox=929;RAW_GT_COUNT=0,1,0;RAW_MQandDP=273600,76;ReadPosRankSum=0.573;VarDP=74 GT:AD:DP:GQ:PL:SB 0/1:38,36,0:74:99:929,0,1029,1044,1136,2180:16,22,16,20 +chrX 2229937 . G . . END=2231492 GT:DP:GQ:MIN_DP:PL 0/0:53:31:50:0,31,1097 +chrX 2231493 . A . . END=2231493 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,850 +chrX 2231494 . T . . END=2231584 GT:DP:GQ:MIN_DP:PL 0/0:51:21:50:0,21,1059 +chrX 2231585 . A ATCC, 909.60 . AS_QUALapprox=|917|0;AS_VarDP=26|24|0;BaseQRankSum=-1.000;DP=51;MQRankSum=0.000;QUALapprox=917;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-1.496;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:26,24,0:50:99:917,0,1020,995,1092,2087:8,18,8,16 +chrX 2231586 . T . . END=2231610 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,100,1302 +chrX 2231611 . TCTC T, 568.60 . AS_QUALapprox=|576|0;AS_VarDP=28|16|0;BaseQRankSum=1.052;DP=46;MQRankSum=0.000;QUALapprox=576;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=-0.063;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:28,16,0:44:99:576,0,1100,660,1148,1808:10,18,4,12 +chrX 2231615 . C . . END=2231698 GT:DP:GQ:MIN_DP:PL 0/0:40:68:40:0,68,907 +chrX 2231699 . A G, 364.64 . AS_QUALapprox=|372|0;AS_VarDP=18|15|0;BaseQRankSum=-1.071;DP=39;MQRankSum=0.000;QUALapprox=372;RAW_GT_COUNT=0,1,0;RAW_MQandDP=140400,39;ReadPosRankSum=-0.760;VarDP=33 GT:AD:DP:GQ:PL:SB 0/1:18,15,0:33:99:372,0,496,426,542,968:7,11,9,6 +chrX 2231700 . C . . END=2231842 GT:DP:GQ:MIN_DP:PL 0/0:42:30:41:0,30,867 +chrX 2231843 . A . . END=2231843 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,815 +chrX 2231844 . T . . END=2231867 GT:DP:GQ:MIN_DP:PL 0/0:39:30:37:0,30,1082 +chrX 2231868 . A . . END=2231868 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,853 +chrX 2231869 . T . . END=2231873 GT:DP:GQ:MIN_DP:PL 0/0:41:54:41:0,54,1206 +chrX 2231874 . T . . END=2231874 GT:DP:GQ:MIN_DP:PL 0/0:42:17:42:0,17,1152 +chrX 2231875 . C . . END=2231876 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,99,1296 +chrX 2231877 . A . . END=2231877 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,872 +chrX 2231878 . A . . END=2231882 GT:DP:GQ:MIN_DP:PL 0/0:39:23:37:0,23,1001 +chrX 2231883 . T . . END=2231883 GT:DP:GQ:MIN_DP:PL 0/0:39:13:39:0,13,1077 +chrX 2231884 . T . . END=2231951 GT:DP:GQ:MIN_DP:PL 0/0:43:77:43:0,77,1115 +chrX 2231952 . C CTCT, 598.60 . AS_QUALapprox=|606|0;AS_VarDP=22|16|0;BaseQRankSum=-0.488;DP=42;MQRankSum=0.000;QUALapprox=606;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151200,42;ReadPosRankSum=0.399;VarDP=38 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,16,0:38:99:0|1:2231952_C_CTCT:606,0,876,672,924,1596:2231952:9,13,5,11 +chrX 2231953 . T . . END=2231966 GT:DP:GQ:MIN_DP:PL 0/0:41:79:41:0,79,1170 +chrX 2231967 . CCTT C, 574.60 . AS_QUALapprox=|582|0;AS_VarDP=26|16|0;BaseQRankSum=-0.262;DP=43;MQRankSum=0.000;QUALapprox=582;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154800,43;ReadPosRankSum=1.151;VarDP=42 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,16,0:42:99:0|1:2231952_C_CTCT:582,0,1044,660,1092,1752:2231952:10,16,5,11 +chrX 2231971 . C . . END=2232032 GT:DP:GQ:MIN_DP:PL 0/0:38:58:36:0,58,1041 +chrX 2232033 . C CCTCCTCCCTTACTT,CCTCCTCCCTTTCTT, 758.60 . AS_QUALapprox=|766|314|0;AS_VarDP=18|15|2|0;BaseQRankSum=0.757;DP=40;MQRankSum=0.000;QUALapprox=766;RAW_GT_COUNT=0,1,0;RAW_MQandDP=144000,40;ReadPosRankSum=-2.113;VarDP=35 GT:AD:DP:GQ:PL:SB 0/1:18,15,2,0:35:99:766,0,696,452,726,1153,683,756,1198,1397:7,11,7,10 +chrX 2232034 . C . . END=2232201 GT:DP:GQ:MIN_DP:PL 0/0:48:60:48:0,60,994 +chrX 2232202 . A T, 885.64 . AS_QUALapprox=|893|0;AS_VarDP=24|35|0;BaseQRankSum=-1.333;DP=61;MQRankSum=0.000;QUALapprox=893;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-0.594;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:24,35,0:59:99:893,0,600,965,705,1670:11,13,20,15 +chrX 2232203 . A . . END=2232232 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 2232233 . C T, 1063.64 . AS_QUALapprox=|1071|0;AS_VarDP=21|40|0;BaseQRankSum=0.326;DP=62;MQRankSum=0.000;QUALapprox=1071;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=-0.434;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:21,40,0:61:99:1071,0,462,1134,582,1715:11,10,22,18 +chrX 2232234 . C . . END=2232331 GT:DP:GQ:MIN_DP:PL 0/0:71:46:71:0,46,1800 +chrX 2232332 . A AAACAAC, 1341.60 . AS_QUALapprox=|1349|0;AS_VarDP=26|34|0;BaseQRankSum=-0.818;DP=70;MQRankSum=0.000;QUALapprox=1349;RAW_GT_COUNT=0,1,0;RAW_MQandDP=252000,70;ReadPosRankSum=0.366;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:26,34,0:60:99:1349,0,990,1428,1092,2520:14,12,16,18 +chrX 2232333 . A . . END=2232354 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 2232355 . G C, 874.64 . AS_QUALapprox=|882|0;AS_VarDP=26|32|0;BaseQRankSum=-1.833;DP=61;MQRankSum=0.000;QUALapprox=882;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-1.166;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:26,32,0:58:99:882,0,730,960,825,1786:16,10,14,18 +chrX 2232356 . A . . END=2232612 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,105,1800 +chrX 2232613 . C T, 784.64 . AS_QUALapprox=|792|0;AS_VarDP=23|30|0;BaseQRankSum=0.045;DP=58;MQRankSum=-0.838;QUALapprox=792;RAW_GT_COUNT=0,1,0;RAW_MQandDP=207801,58;ReadPosRankSum=0.817;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:23,30,0:53:99:792,0,570,861,660,1522:16,7,14,16 +chrX 2232614 . C . . END=2232803 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 2232804 . C T, 728.64 . AS_QUALapprox=|736|0;AS_VarDP=39|30|0;BaseQRankSum=-1.067;DP=70;MQRankSum=0.000;QUALapprox=736;RAW_GT_COUNT=0,1,0;RAW_MQandDP=252000,70;ReadPosRankSum=-0.341;VarDP=69 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:39,30,0:69:99:0|1:2232804_C_T:736,0,1477,853,1567,2420:2232804:20,19,20,10 +chrX 2232805 . C . . END=2232813 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,120,1800 +chrX 2232814 . C T, 1041.64 . AS_QUALapprox=|1049|0;AS_VarDP=33|39|0;BaseQRankSum=0.558;DP=73;MQRankSum=0.000;QUALapprox=1049;RAW_GT_COUNT=0,1,0;RAW_MQandDP=262800,73;ReadPosRankSum=-0.225;VarDP=72 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:33,39,0:72:99:1|0:2232804_C_T:1049,0,1165,1148,1282,2431:2232804:21,12,20,19 +chrX 2232815 . G . . END=2232907 GT:DP:GQ:MIN_DP:PL 0/0:79:99:79:0,120,1800 +chrX 2232908 . C G, 1073.64 . AS_QUALapprox=|1081|0;AS_VarDP=35|41|0;BaseQRankSum=0.145;DP=77;MQRankSum=0.000;QUALapprox=1081;RAW_GT_COUNT=0,1,0;RAW_MQandDP=277200,77;ReadPosRankSum=-1.027;VarDP=76 GT:AD:DP:GQ:PL:SB 0/1:35,41,0:76:99:1081,0,884,1186,1006,2192:18,17,22,19 +chrX 2232909 . T . . END=2232934 GT:DP:GQ:MIN_DP:PL 0/0:73:99:73:0,120,1800 +chrX 2232935 . T C, 930.64 . AS_QUALapprox=|938|0;AS_VarDP=35|38|0;BaseQRankSum=-0.147;DP=74;MQRankSum=0.000;QUALapprox=938;RAW_GT_COUNT=0,1,0;RAW_MQandDP=266400,74;ReadPosRankSum=0.149;VarDP=73 GT:AD:DP:GQ:PL:SB 0/1:35,38,0:73:99:938,0,878,1043,991,2034:14,21,18,20 +chrX 2232936 . C . . END=2233034 GT:DP:GQ:MIN_DP:PL 0/0:76:99:76:0,120,1800 +chrX 2233035 . T C, 1096.64 . AS_QUALapprox=|1104|0;AS_VarDP=32|40|0;BaseQRankSum=-0.509;DP=74;MQRankSum=0.000;QUALapprox=1104;RAW_GT_COUNT=0,1,0;RAW_MQandDP=266400,74;ReadPosRankSum=0.227;VarDP=72 GT:AD:DP:GQ:PL:SB 0/1:32,40,0:72:99:1104,0,841,1200,961,2161:16,16,20,20 +chrX 2233036 . A . . END=2233058 GT:DP:GQ:MIN_DP:PL 0/0:75:99:75:0,120,1800 +chrX 2233059 . AAAAGAAAGAAAG A, 1489.60 . AS_QUALapprox=|1497|0;AS_VarDP=32|38|0;BaseQRankSum=0.032;DP=78;MQRankSum=1.118;QUALapprox=1497;RAW_GT_COUNT=0,1,0;RAW_MQandDP=280009,78;ReadPosRankSum=1.965;VarDP=70 GT:AD:DP:GQ:PL:SB 0/1:32,38,0:70:99:1497,0,1199,1594,1314,2908:18,14,22,16 +chrX 2233072 . A . . END=2233240 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 2233241 . C T, 828.64 . AS_QUALapprox=|836|0;AS_VarDP=34|33|0;BaseQRankSum=0.559;DP=71;MQRankSum=0.000;QUALapprox=836;RAW_GT_COUNT=0,1,0;RAW_MQandDP=255600,71;ReadPosRankSum=0.006;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:34,33,0:67:99:836,0,870,938,969,1907:18,16,8,25 +chrX 2233242 . G . . END=2233370 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 2233371 . CTT C, 532.60 . AS_QUALapprox=|540|0;AS_VarDP=29|19|0;BaseQRankSum=2.355;DP=56;MQRankSum=0.000;QUALapprox=540;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-1.377;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:29,19,0:48:99:540,0,904,628,962,1589:15,14,7,12 +chrX 2233374 . T . . END=2233819 GT:DP:GQ:MIN_DP:PL 0/0:57:32:52:0,32,1181 +chrX 2233820 . T A, 572.64 . AS_QUALapprox=|580|0;AS_VarDP=29|23|0;BaseQRankSum=-1.872;DP=53;MQRankSum=0.000;QUALapprox=580;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=-0.267;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:29,23,0:52:99:580,0,831,668,900,1567:16,13,13,10 +chrX 2233821 . A . . END=2234507 GT:DP:GQ:MIN_DP:PL 0/0:61:44:61:0,44,1368 +chrX 2234508 . T G, 848.64 . AS_QUALapprox=|856|0;AS_VarDP=35|32|0;BaseQRankSum=0.170;DP=71;MQRankSum=0.000;QUALapprox=856;RAW_GT_COUNT=0,1,0;RAW_MQandDP=255600,71;ReadPosRankSum=1.996;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:35,32,0:67:99:856,0,964,961,1060,2021:19,16,12,20 +chrX 2234509 . T . . END=2235738 GT:DP:GQ:MIN_DP:PL 0/0:44:32:41:0,32,1105 +chrX 2235739 . GAA G, 375.60 . AS_QUALapprox=|383|0;AS_VarDP=16|14|0;BaseQRankSum=1.352;DP=42;MQRankSum=1.002;QUALapprox=383;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147904,42;ReadPosRankSum=-0.798;VarDP=30 GT:AD:DP:GQ:PL:SB 0/1:16,14,0:30:99:383,0,452,431,494,926:5,11,10,4 +chrX 2235742 . A . . END=2235882 GT:DP:GQ:MIN_DP:PL 0/0:60:92:60:0,92,1216 +chrX 2235883 . G A, 766.64 . AS_QUALapprox=|774|0;AS_VarDP=38|30|0;BaseQRankSum=0.443;DP=70;MQRankSum=0.000;QUALapprox=774;RAW_GT_COUNT=0,1,0;RAW_MQandDP=252000,70;ReadPosRankSum=1.143;VarDP=68 GT:AD:DP:GQ:PL:SB 0/1:38,30,0:68:99:774,0,1021,888,1110,1998:22,16,17,13 +chrX 2235884 . C . . END=2236059 GT:DP:GQ:MIN_DP:PL 0/0:67:92:67:0,92,1800 +chrX 2236060 . T C, 968.64 . AS_QUALapprox=|976|0;AS_VarDP=26|40|0;BaseQRankSum=-2.037;DP=70;MQRankSum=0.000;QUALapprox=976;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248841,70;ReadPosRankSum=-1.510;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:26,40,0:66:99:976,0,657,1054,776,1830:7,19,14,26 +chrX 2236061 . G . . END=2236710 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,105,1415 +chrX 2236711 . T C, 616.64 . AS_QUALapprox=|624|0;AS_VarDP=26|24|0;BaseQRankSum=-0.741;DP=53;MQRankSum=1.001;QUALapprox=624;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190009,53;ReadPosRankSum=-0.078;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:26,24,0:50:99:624,0,699,702,771,1473:15,11,14,10 +chrX 2236712 . G . . END=2236882 GT:DP:GQ:MIN_DP:PL 0/0:52:80:52:0,80,1335 +chrX 2236883 . T TA, 461.60 . AS_QUALapprox=|469|0;AS_VarDP=26|24|0;BaseQRankSum=0.306;DP=60;MQRankSum=0.000;QUALapprox=469;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=1.030;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:26,24,0:50:99:469,0,549,547,621,1168:14,12,12,12 +chrX 2236884 . A . . END=2237013 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 2237014 . C A, 1461.64 . AS_QUALapprox=|1469|0;AS_VarDP=31|38|0;BaseQRankSum=-0.909;DP=72;MQRankSum=0.000;QUALapprox=1469;RAW_GT_COUNT=0,1,0;RAW_MQandDP=259200,72;ReadPosRankSum=0.867;VarDP=69 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:31,38,0:69:99:0|1:2237014_C_A:1469,0,1143,1562,1257,2819:2237014:17,14,23,15 +chrX 2237015 . C . . END=2237017 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 2237018 . G A, 1436.64 . AS_QUALapprox=|1444|0;AS_VarDP=30|37|0;BaseQRankSum=1.714;DP=68;MQRankSum=0.000;QUALapprox=1444;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=1.247;VarDP=67 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:30,37,0:67:99:0|1:2237014_C_A:1444,0,1118,1534,1229,2763:2237014:17,13,22,15 +chrX 2237019 . T . . END=2237229 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 2237230 . T C, 726.64 . AS_QUALapprox=|734|0;AS_VarDP=29|27|0;BaseQRankSum=0.719;DP=58;MQRankSum=0.000;QUALapprox=734;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-0.320;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:29,27,0:56:99:734,0,800,822,881,1702:15,14,15,12 +chrX 2237231 . T . . END=2238330 GT:DP:GQ:MIN_DP:PL 0/0:54:50:54:0,50,1072 +chrX 2238331 . T G, 760.64 . AS_QUALapprox=|768|0;AS_VarDP=28|30|0;BaseQRankSum=-0.995;DP=61;MQRankSum=0.000;QUALapprox=768;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216784,61;ReadPosRankSum=-0.444;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:28,30,0:58:99:768,0,739,852,829,1681:14,14,21,9 +chrX 2238332 . G . . END=2238676 GT:DP:GQ:MIN_DP:PL 0/0:60:54:60:0,54,1182 +chrX 2238677 . A G, 596.64 . AS_QUALapprox=|604|0;AS_VarDP=28|23|0;BaseQRankSum=-1.102;DP=53;MQRankSum=0.000;QUALapprox=604;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=-0.151;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:28,23,0:51:99:604,0,800,688,869,1558:11,17,11,12 +chrX 2238678 . G . . END=2238749 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,119,1673 +chrX 2238750 . AT A, 499.60 . AS_QUALapprox=|507|0;AS_VarDP=23|24|0;BaseQRankSum=-2.258;DP=58;MQRankSum=0.000;QUALapprox=507;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=0.852;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:23,24,0:47:99:507,0,459,576,531,1107:12,11,13,11 +chrX 2238752 . T . . END=2239404 GT:DP:GQ:MIN_DP:PL 0/0:58:65:58:0,65,1176 +chrX 2239405 . C CA, 207.60 . AS_QUALapprox=|215|0;AS_VarDP=17|13|0;BaseQRankSum=0.565;DP=42;MQRankSum=0.000;QUALapprox=215;RAW_GT_COUNT=0,1,0;RAW_MQandDP=149364,42;ReadPosRankSum=1.382;VarDP=30 GT:AD:DP:GQ:PL:SB 0/1:17,13,0:30:99:215,0,310,266,349,614:10,7,6,7 +chrX 2239406 . A . . END=2239717 GT:DP:GQ:MIN_DP:PL 0/0:59:67:59:0,67,1181 +chrX 2239718 . G A, 752.64 . AS_QUALapprox=|760|0;AS_VarDP=36|32|0;BaseQRankSum=-0.406;DP=71;MQRankSum=-1.031;QUALapprox=760;RAW_GT_COUNT=0,1,0;RAW_MQandDP=252441,71;ReadPosRankSum=0.018;VarDP=68 GT:AD:DP:GQ:PL:SB 0/1:36,32,0:68:99:760,0,923,867,1018,1885:18,18,14,18 +chrX 2239719 . A . . END=2239755 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 2239756 . A G, 732.64 . AS_QUALapprox=|740|0;AS_VarDP=33|30|0;BaseQRankSum=-1.049;DP=64;MQRankSum=-1.017;QUALapprox=740;RAW_GT_COUNT=0,1,0;RAW_MQandDP=227241,64;ReadPosRankSum=-1.825;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:33,30,0:63:99:740,0,883,838,973,1811:15,18,12,18 +chrX 2239757 . A . . END=2240290 GT:DP:GQ:MIN_DP:PL 0/0:65:93:65:0,93,1787 +chrX 2240291 . C CA, 991.60 . AS_QUALapprox=|999|0;AS_VarDP=27|29|0;BaseQRankSum=-2.952;DP=67;MQRankSum=-1.351;QUALapprox=999;RAW_GT_COUNT=0,1,0;RAW_MQandDP=238849,67;ReadPosRankSum=-0.821;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,29,0:56:99:0|1:2240291_C_CA:999,0,932,1081,1020,2100:2240291:12,15,16,13 +chrX 2240292 . A . . END=2240311 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 2240312 . A T, 1088.64 . AS_QUALapprox=|1096|0;AS_VarDP=32|32|0;BaseQRankSum=-0.500;DP=70;MQRankSum=-1.403;QUALapprox=1096;RAW_GT_COUNT=0,1,0;RAW_MQandDP=249649,70;ReadPosRankSum=0.755;VarDP=64 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:32,32,0:64:99:0|1:2240291_C_CA:1096,0,1050,1192,1146,2338:2240291:17,15,20,12 +chrX 2240313 . A . . END=2241051 GT:DP:GQ:MIN_DP:PL 0/0:54:52:54:0,52,1404 +chrX 2241052 . C T, 1009.64 . AS_QUALapprox=|1017|0;AS_VarDP=25|38|0;BaseQRankSum=0.290;DP=66;MQRankSum=0.000;QUALapprox=1017;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=-0.021;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:25,38,0:63:99:1017,0,580,1092,694,1786:14,11,26,12 +chrX 2241053 . G . . END=2241144 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 2241145 . C T, 1118.64 . AS_QUALapprox=|1126|0;AS_VarDP=30|40|0;BaseQRankSum=1.529;DP=74;MQRankSum=0.000;QUALapprox=1126;RAW_GT_COUNT=0,1,0;RAW_MQandDP=266400,74;ReadPosRankSum=0.748;VarDP=70 GT:AD:DP:GQ:PL:SB 0/1:30,40,0:70:99:1126,0,718,1214,838,2052:17,13,19,21 +chrX 2241146 . G . . END=2241202 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 2241203 . C T, 836.64 . AS_QUALapprox=|844|0;AS_VarDP=34|34|0;BaseQRankSum=-0.292;DP=74;MQRankSum=0.000;QUALapprox=844;RAW_GT_COUNT=0,1,0;RAW_MQandDP=266400,74;ReadPosRankSum=-0.153;VarDP=68 GT:AD:DP:GQ:PL:SB 0/1:34,34,0:68:99:844,0,869,945,970,1915:18,16,10,24 +chrX 2241204 . C . . END=2241595 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 2241596 . C T, 740.64 . AS_QUALapprox=|748|0;AS_VarDP=23|27|0;BaseQRankSum=-0.162;DP=51;MQRankSum=0.000;QUALapprox=748;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=0.185;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:23,27,0:50:99:748,0,614,817,696,1513:9,14,14,13 +chrX 2241597 . T . . END=2241724 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 2241725 . G A, 1062.64 . AS_QUALapprox=|1070|0;AS_VarDP=21|39|0;BaseQRankSum=-0.390;DP=61;MQRankSum=0.000;QUALapprox=1070;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=0.147;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:21,39,0:60:99:1070,0,509,1134,626,1759:9,12,23,16 +chrX 2241726 . T . . END=2241750 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 2241751 . A C, 970.64 . AS_QUALapprox=|978|0;AS_VarDP=19|35|0;BaseQRankSum=-0.661;DP=56;MQRankSum=0.000;QUALapprox=978;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=0.607;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:19,35,0:54:99:978,0,479,1035,583,1618:10,9,22,13 +chrX 2241752 . T . . END=2242250 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,99,1320 +chrX 2242251 . T G, 489.64 . AS_QUALapprox=|497|0;AS_VarDP=29|22|0;BaseQRankSum=0.079;DP=51;MQRankSum=0.000;QUALapprox=497;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-0.590;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:29,22,0:51:99:497,0,746,584,811,1395:20,9,8,14 +chrX 2242252 . A . . END=2243087 GT:DP:GQ:MIN_DP:PL 0/0:59:94:59:0,94,1384 +chrX 2243088 . C G, 1289.06 . AS_QUALapprox=|1303|0;AS_VarDP=0|39|0;DP=40;QUALapprox=1303;RAW_GT_COUNT=0,0,1;RAW_MQandDP=144000,40;VarDP=39 GT:AD:DP:GQ:PL:SB 1/1:0,39,0:39:99:1303,117,0,1303,117,1303:0,0,16,23 +chrX 2243089 . G . . END=2243353 GT:DP:GQ:MIN_DP:PL 0/0:52:88:52:0,88,1456 +chrX 2243354 . T C, 658.64 . AS_QUALapprox=|666|0;AS_VarDP=31|28|0;BaseQRankSum=-1.503;DP=62;MQRankSum=0.000;QUALapprox=666;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=0.759;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:31,28,0:59:99:666,0,805,759,889,1648:14,17,9,19 +chrX 2243355 . G . . END=2243482 GT:DP:GQ:MIN_DP:PL 0/0:54:97:54:0,97,1390 +chrX 2243483 . T A, 638.64 . AS_QUALapprox=|646|0;AS_VarDP=24|24|0;BaseQRankSum=-0.846;DP=51;MQRankSum=0.000;QUALapprox=646;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-0.763;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:24,24,0:48:99:646,0,668,719,740,1459:13,11,13,11 +chrX 2243484 . T . . END=2243630 GT:DP:GQ:MIN_DP:PL 0/0:42:71:42:0,71,1119 +chrX 2243631 . T C, 596.64 . AS_QUALapprox=|604|0;AS_VarDP=18|22|0;BaseQRankSum=-0.593;DP=41;MQRankSum=0.000;QUALapprox=604;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147600,41;ReadPosRankSum=0.952;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:18,22,0:40:99:604,0,485,658,551,1209:9,9,12,10 +chrX 2243632 . G . . END=2243767 GT:DP:GQ:MIN_DP:PL 0/0:50:95:50:0,95,1230 +chrX 2243768 . C A, 782.64 . AS_QUALapprox=|790|0;AS_VarDP=28|22|0;BaseQRankSum=-0.789;DP=51;MQRankSum=0.927;QUALapprox=790;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183025,51;ReadPosRankSum=-1.173;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,22,0:50:99:0|1:2243768_C_A:790,0,1032,873,1098,1971:2243768:11,17,11,11 +chrX 2243769 . A . . END=2243784 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,105,1575 +chrX 2243785 . CCTGTTTTTTTTTTTTTTTTT C, 834.60 . AS_QUALapprox=|842|0;AS_VarDP=32|23|0;BaseQRankSum=0.031;DP=55;MQRankSum=1.236;QUALapprox=842;RAW_GT_COUNT=0,1,0;RAW_MQandDP=195425,55;ReadPosRankSum=1.902;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:32,23,0:55:99:0|1:2243768_C_A:842,0,1264,938,1333,2271:2243768:10,22,10,13 +chrX 2243798 . T *,TG, 870.01 . AS_QUALapprox=|0|939|0;AS_VarDP=0|22|23|0;DP=46;QUALapprox=1772;RAW_GT_COUNT=0,0,1;RAW_MQandDP=163025,46;VarDP=45 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 2|1:0,22,23,0:45:99:1|0:2243768_C_A:1772,880,941,905,0,833,1787,951,907,1843:2243768:0,0,19,26 +chrX 2243802 . T *,TGTTTTG, 883.01 . AS_QUALapprox=|0|954|0;AS_VarDP=0|22|24|0;DP=46;QUALapprox=1787;RAW_GT_COUNT=0,0,1;RAW_MQandDP=163025,46;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 2|1:0,22,24,0:46:99:1|0:2243768_C_A:1787,893,942,906,0,833,1800,956,907,1850:2243768:0,0,19,27 +chrX 2243806 . T . . END=2243807 GT:DP:GQ:MIN_DP:PL 0/0:40:69:40:0,69,1035 +chrX 2243808 . T G, 834.64 . AS_QUALapprox=|842|0;AS_VarDP=21|22|0;BaseQRankSum=-0.280;DP=43;MQRankSum=1.498;QUALapprox=842;RAW_GT_COUNT=0,1,0;RAW_MQandDP=152225,43;ReadPosRankSum=2.435;VarDP=43 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,22,0:43:99:0|1:2243768_C_A:842,0,816,906,882,1787:2243768:7,14,10,12 +chrX 2243809 . T TTTG, 729.60 . AS_QUALapprox=|737|0;AS_VarDP=21|21|0;BaseQRankSum=0.320;DP=42;MQRankSum=-1.397;QUALapprox=737;RAW_GT_COUNT=0,1,0;RAW_MQandDP=148625,42;ReadPosRankSum=-2.503;VarDP=42 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:21,21,0:42:99:1|0:2243768_C_A:737,0,802,800,864,1664:2243768:10,11,7,14 +chrX 2243810 . T . . END=2243812 GT:DP:GQ:MIN_DP:PL 0/0:39:51:39:0,51,1131 +chrX 2243813 . T . . END=2243813 GT:DP:GQ:MIN_DP:PL 0/0:40:16:40:0,16,1082 +chrX 2243814 . T . . END=2243818 GT:DP:GQ:MIN_DP:PL 0/0:41:81:41:0,81,1215 +chrX 2243819 . T . . END=2243819 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,903 +chrX 2243820 . T . . END=2243822 GT:DP:GQ:MIN_DP:PL 0/0:40:82:40:0,82,1155 +chrX 2243823 . G . . END=2243824 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,764 +chrX 2243825 . G . . END=2244296 GT:DP:GQ:MIN_DP:PL 0/0:71:22:32:0,22,803 +chrX 2244297 . A . . END=2244299 GT:DP:GQ:MIN_DP:PL 0/0:72:0:72:0,0,1781 +chrX 2244300 . T . . END=2244300 GT:DP:GQ:MIN_DP:PL 0/0:76:99:76:0,120,1800 +chrX 2244301 . G . . END=2244301 GT:DP:GQ:MIN_DP:PL 0/0:72:0:72:0,0,1697 +chrX 2244302 . C CCTCTCT,CCTCTCTCT, 2570.02 . AS_QUALapprox=|2006|1529|0;AS_VarDP=0|35|22|0;DP=66;QUALapprox=2587;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=57 GT:AD:DP:GQ:PL:SB 1/2:0,35,22,0:57:99:2587,760,581,1230,0,1058,2318,743,1202,2199:0,0,34,23 +chrX 2244303 . C . . END=2244617 GT:DP:GQ:MIN_DP:PL 0/0:73:99:73:0,120,1800 +chrX 2244618 . A G, 577.64 . AS_QUALapprox=|585|0;AS_VarDP=31|24|0;BaseQRankSum=-0.537;DP=59;MQRankSum=0.000;QUALapprox=585;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=0.696;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:31,24,0:55:99:585,0,828,677,900,1577:15,16,9,15 +chrX 2244619 . A . . END=2244670 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 2244671 . C T, 591.64 . AS_QUALapprox=|599|0;AS_VarDP=30|22|0;BaseQRankSum=2.301;DP=58;MQRankSum=0.000;QUALapprox=599;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=1.028;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:30,22,0:52:99:599,0,781,689,847,1536:16,14,8,14 +chrX 2244672 . G . . END=2244682 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 2244683 . TTA T, 1737.03 . AS_QUALapprox=|1751|0;AS_VarDP=0|46|0;DP=56;QUALapprox=1751;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1751,139,0,1751,139,1751:0,0,23,23 +chrX 2244686 . T . . END=2244751 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 2244752 . A C, 749.64 . AS_QUALapprox=|757|0;AS_VarDP=34|28|0;BaseQRankSum=1.822;DP=63;MQRankSum=0.000;QUALapprox=757;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=-0.467;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:34,28,0:62:99:757,0,881,859,965,1824:22,12,22,6 +chrX 2244753 . C . . END=2244851 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 2244852 . T C, 826.64 . AS_QUALapprox=|834|0;AS_VarDP=32|31|0;BaseQRankSum=1.179;DP=64;MQRankSum=0.000;QUALapprox=834;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=-0.963;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:32,31,0:63:99:834,0,828,929,921,1850:15,17,22,9 +chrX 2244853 . A . . END=2244943 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,117,1800 +chrX 2244944 . A T, 2001.06 . AS_QUALapprox=|2015|0;AS_VarDP=0|60|0;DP=63;QUALapprox=2015;RAW_GT_COUNT=0,0,1;RAW_MQandDP=224389,63;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:2015,180,0,2015,180,2015:0,0,25,35 +chrX 2244945 . C . . END=2245061 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 2245062 . A G, 2075.06 . AS_QUALapprox=|2089|0;AS_VarDP=0|63|0;DP=66;QUALapprox=2089;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237025,66;VarDP=63 GT:AD:DP:GQ:PL:SB 1/1:0,63,0:63:99:2089,189,0,2089,189,2089:0,0,29,34 +chrX 2245063 . G . . END=2245503 GT:DP:GQ:MIN_DP:PL 0/0:54:53:54:0,53,942 +chrX 2245504 . T . . END=2245504 GT:DP:GQ:MIN_DP:PL 0/0:33:15:33:0,15,889 +chrX 2245505 . T . . END=2245529 GT:DP:GQ:MIN_DP:PL 0/0:34:40:34:0,40,928 +chrX 2245530 . G A, 430.64 . AS_QUALapprox=|438|0;AS_VarDP=12|16|0;BaseQRankSum=1.297;DP=29;MQRankSum=0.000;QUALapprox=438;RAW_GT_COUNT=0,1,0;RAW_MQandDP=101889,29;ReadPosRankSum=0.395;VarDP=28 GT:AD:DP:GQ:PL:SB 0/1:12,16,0:28:99:438,0,279,473,326,800:5,7,7,9 +chrX 2245531 . A . . END=2245694 GT:DP:GQ:MIN_DP:PL 0/0:47:59:47:0,59,971 +chrX 2245695 . T C, 1360.06 . AS_QUALapprox=|1374|0;AS_VarDP=0|43|0;DP=46;QUALapprox=1374;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;VarDP=43 GT:AD:DP:GQ:PL:SB 1/1:0,43,0:43:99:1374,129,0,1374,129,1374:0,0,24,19 +chrX 2245696 . G . . END=2245728 GT:DP:GQ:MIN_DP:PL 0/0:41:96:41:0,96,1051 +chrX 2245729 . G A, 439.64 . AS_QUALapprox=|447|0;AS_VarDP=21|17|0;BaseQRankSum=1.382;DP=40;MQRankSum=-1.059;QUALapprox=447;RAW_GT_COUNT=0,1,0;RAW_MQandDP=143425,40;ReadPosRankSum=-0.367;VarDP=38 GT:AD:DP:GQ:PL:SB 0/1:21,17,0:38:99:447,0,533,510,585,1094:14,7,11,6 +chrX 2245730 . G . . END=2245762 GT:DP:GQ:MIN_DP:PL 0/0:34:74:34:0,74,936 +chrX 2245763 . C T, 379.64 . AS_QUALapprox=|387|0;AS_VarDP=16|15|0;BaseQRankSum=-0.491;DP=37;MQRankSum=-0.968;QUALapprox=387;RAW_GT_COUNT=0,1,0;RAW_MQandDP=132625,37;ReadPosRankSum=-1.365;VarDP=31 GT:AD:DP:GQ:PL:SB 0/1:16,15,0:31:99:387,0,433,435,478,913:12,4,10,5 +chrX 2245764 . T . . END=2245957 GT:DP:GQ:MIN_DP:PL 0/0:47:46:47:0,46,996 +chrX 2245958 . T . . END=2245960 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,715 +chrX 2245961 . C . . END=2245969 GT:DP:GQ:MIN_DP:PL 0/0:34:43:30:0,43,858 +chrX 2245970 . C A, 945.06 . AS_QUALapprox=|959|0;AS_VarDP=0|27|0;DP=29;QUALapprox=959;RAW_GT_COUNT=0,0,1;RAW_MQandDP=103936,29;VarDP=27 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,27,0:27:81:0|1:2245961_C_A:959,81,0,959,81,959:2245961:0,0,15,12 +chrX 2245971 . A . . END=2246363 GT:DP:GQ:MIN_DP:PL 0/0:28:30:27:0,30,1035 +chrX 2246364 . C T, 442.64 . AS_QUALapprox=|450|0;AS_VarDP=30|17|0;BaseQRankSum=1.359;DP=47;MQRankSum=0.000;QUALapprox=450;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=0.221;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:30,17,0:47:99:450,0,854,540,905,1445:19,11,6,11 +chrX 2246365 . T . . END=2246668 GT:DP:GQ:MIN_DP:PL 0/0:50:44:44:0,44,808 +chrX 2246669 . GA G, 68.60 . AS_QUALapprox=|76|0;AS_VarDP=15|4|0;BaseQRankSum=1.193;DP=48;MQRankSum=0.000;QUALapprox=76;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169929,48;ReadPosRankSum=0.300;VarDP=19 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:15,4,0:19:76:0|1:2246669_GA_G:76,0,620,123,632,756:2246669:11,4,4,0 +chrX 2246671 . A . . END=2246675 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,99,1485 +chrX 2246676 . AAG A, 62.60 . AS_QUALapprox=|70|0;AS_VarDP=17|4|0;BaseQRankSum=0.992;DP=49;MQRankSum=0.000;QUALapprox=70;RAW_GT_COUNT=0,1,0;RAW_MQandDP=173529,49;ReadPosRankSum=0.945;VarDP=21 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:17,4,0:21:70:0|1:2246669_GA_G:70,0,704,123,716,839:2246669:12,5,4,0 +chrX 2246679 . A . . END=2246681 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,99,1485 +chrX 2246682 . GA G, 59.60 . AS_QUALapprox=|67|0;AS_VarDP=18|4|0;BaseQRankSum=1.262;DP=50;MQRankSum=0.000;QUALapprox=67;RAW_GT_COUNT=0,1,0;RAW_MQandDP=177129,50;ReadPosRankSum=1.075;VarDP=22 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:18,4,0:22:67:0|1:2246669_GA_G:67,0,746,123,758,881:2246669:12,6,4,0 +chrX 2246684 . A . . END=2246695 GT:DP:GQ:MIN_DP:PL 0/0:38:71:38:0,71,1181 +chrX 2246696 . A AGAAAG, 66.60 . AS_QUALapprox=|74|0;AS_VarDP=16|4|0;BaseQRankSum=1.321;DP=38;MQRankSum=0.000;QUALapprox=74;RAW_GT_COUNT=0,1,0;RAW_MQandDP=136800,38;ReadPosRankSum=1.514;VarDP=20 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:16,4,0:20:74:0|1:2246669_GA_G:74,0,661,123,673,796:2246669:11,5,4,0 +chrX 2246697 . A . . END=2246705 GT:DP:GQ:MIN_DP:PL 0/0:36:78:36:0,78,1170 +chrX 2246706 . G GAA,GAGAAAGAAAGAA, 448.60 . AS_QUALapprox=|456|312|0;AS_VarDP=10|4|0|0;BaseQRankSum=1.516;DP=40;MQRankSum=0.000;QUALapprox=456;RAW_GT_COUNT=0,1,0;RAW_MQandDP=144000,40;ReadPosRankSum=0.283;VarDP=14 GT:AD:DP:GQ:PL:SB 0/1:10,4,0,0:14:99:456,0,634,144,398,943,363,574,791,1060:6,4,4,0 +chrX 2246707 . A . . END=2246745 GT:DP:GQ:MIN_DP:PL 0/0:39:60:39:0,60,900 +chrX 2246746 . AAG A, 485.60 . AS_QUALapprox=|493|0;AS_VarDP=23|16|0;BaseQRankSum=0.864;DP=42;MQRankSum=0.000;QUALapprox=493;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151200,42;ReadPosRankSum=-0.243;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:23,16,0:39:99:493,0,869,563,917,1480:15,8,8,8 +chrX 2246749 . A . . END=2246803 GT:DP:GQ:MIN_DP:PL 0/0:45:75:45:0,75,1066 +chrX 2246804 . C T, 560.64 . AS_QUALapprox=|568|0;AS_VarDP=27|22|0;BaseQRankSum=0.679;DP=51;MQRankSum=0.000;QUALapprox=568;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-0.875;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:27,22,0:49:99:568,0,682,649,748,1396:12,15,13,9 +chrX 2246805 . T . . END=2246905 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 2246906 . A G, 1537.06 . AS_QUALapprox=|1551|0;AS_VarDP=0|49|0;DP=52;QUALapprox=1551;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1551,146,0,1551,146,1551:0,0,30,19 +chrX 2246907 . T . . END=2247034 GT:DP:GQ:MIN_DP:PL 0/0:53:85:53:0,85,1490 +chrX 2247035 . G C, 1694.06 . AS_QUALapprox=|1708|0;AS_VarDP=0|54|0;DP=58;QUALapprox=1708;RAW_GT_COUNT=0,0,1;RAW_MQandDP=204161,58;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:1708,162,0,1708,162,1708:0,0,23,31 +chrX 2247036 . C . . END=2247253 GT:DP:GQ:MIN_DP:PL 0/0:54:72:54:0,72,1414 +chrX 2247254 . A G, 1976.06 . AS_QUALapprox=|1990|0;AS_VarDP=0|62|0;DP=63;QUALapprox=1990;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:0,62,0:62:99:1990,186,0,1990,186,1990:0,0,28,34 +chrX 2247255 . T . . END=2247538 GT:DP:GQ:MIN_DP:PL 0/0:58:95:58:0,95,1276 +chrX 2247539 . A C, 430.64 . AS_QUALapprox=|438|0;AS_VarDP=24|17|0;BaseQRankSum=-0.367;DP=41;MQRankSum=-0.437;QUALapprox=438;RAW_GT_COUNT=0,1,0;RAW_MQandDP=143988,41;ReadPosRankSum=-0.636;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:24,17,0:41:99:438,0,666,510,717,1227:10,14,8,9 +chrX 2247540 . G . . END=2247652 GT:DP:GQ:MIN_DP:PL 0/0:35:37:32:0,37,893 +chrX 2247653 . C . . END=2247654 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,782 +chrX 2247655 . CAA C, 429.60 . AS_QUALapprox=|437|0;AS_VarDP=4|18|0;BaseQRankSum=-0.802;DP=46;MQRankSum=0.000;QUALapprox=437;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=-0.823;VarDP=22 GT:AD:DP:GQ:PL:SB 0/1:4,18,0:22:26:437,0,26,448,80,528:1,3,8,10 +chrX 2247658 . A . . END=2247966 GT:DP:GQ:MIN_DP:PL 0/0:51:63:51:0,63,1167 +chrX 2247967 . G C, 1380.06 . AS_QUALapprox=|1394|0;AS_VarDP=0|43|0;DP=43;QUALapprox=1394;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154225,43;VarDP=43 GT:AD:DP:GQ:PL:SB 1/1:0,43,0:43:99:1394,128,0,1394,128,1394:0,0,24,19 +chrX 2247968 . T . . END=2248127 GT:DP:GQ:MIN_DP:PL 0/0:49:48:49:0,48,1291 +chrX 2248128 . C T, 1593.06 . AS_QUALapprox=|1607|0;AS_VarDP=1|50|0;BaseQRankSum=2.506;DP=51;MQRankSum=0.000;QUALapprox=1607;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;ReadPosRankSum=0.476;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:1,50,0:51:99:1607,142,0,1610,149,1617:0,1,29,21 +chrX 2248129 . C . . END=2248284 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,105,1440 +chrX 2248285 . T C, 762.64 . AS_QUALapprox=|770|0;AS_VarDP=23|28|0;BaseQRankSum=-0.029;DP=53;MQRankSum=0.000;QUALapprox=770;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=0.587;VarDP=51 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,28,0:51:99:0|1:2248285_T_C:770,0,606,839,690,1529:2248285:10,13,14,14 +chrX 2248286 . A . . END=2248292 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 2248293 . T C, 2187.06 . AS_QUALapprox=|2201|0;AS_VarDP=0|60|0;DP=60;QUALapprox=2201;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212800,60;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,60,0:60:99:0|1:2248285_T_C:2201,179,0,2201,179,2201:2248285:0,0,24,36 +chrX 2248294 . G . . END=2248425 GT:DP:GQ:MIN_DP:PL 0/0:34:36:32:0,36,861 +chrX 2248426 . C . . END=2248431 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,551 +chrX 2248432 . C CAAAAAA,CAAAAAAA, 927.02 . AS_QUALapprox=|768|837|0;AS_VarDP=0|7|10|0;DP=33;QUALapprox=944;RAW_GT_COUNT=0,0,1;RAW_MQandDP=105955,33;VarDP=17 GT:AD:DP:GQ:PL:SB 1/2:0,7,10,0:17:99:944,244,176,175,0,107,701,241,173,639:0,0,8,9 +chrX 2248433 . A . . END=2248455 GT:DP:GQ:MIN_DP:PL 0/0:29:54:28:0,54,810 +chrX 2248456 . T . . END=2248456 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,544 +chrX 2248457 . A . . END=2248457 GT:DP:GQ:MIN_DP:PL 0/0:40:75:40:0,75,1125 +chrX 2248458 . C . . END=2248458 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,751 +chrX 2248459 . A . . END=2248461 GT:DP:GQ:MIN_DP:PL 0/0:39:72:39:0,72,1080 +chrX 2248462 . C . . END=2248462 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,625 +chrX 2248463 . A . . END=2248463 GT:DP:GQ:MIN_DP:PL 0/0:32:61:32:0,61,952 +chrX 2248464 . T . . END=2248465 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,668 +chrX 2248466 . A . . END=2248543 GT:DP:GQ:MIN_DP:PL 0/0:32:27:32:0,27,823 +chrX 2248544 . T . . END=2248544 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,704 +chrX 2248545 . G . . END=2248610 GT:DP:GQ:MIN_DP:PL 0/0:30:49:30:0,49,808 +chrX 2248611 . C . . END=2248613 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,391 +chrX 2248614 . A . . END=2248626 GT:DP:GQ:MIN_DP:PL 0/0:44:55:44:0,55,903 +chrX 2248627 . G A, 1057 . AS_QUALapprox=|1318|0;AS_VarDP=0|31|0;DP=36;QUALapprox=1318;RAW_GT_COUNT=0,0,1;RAW_MQandDP=123894,36;VarDP=31 GT:AD:DP:GQ:PL:SB 1/1:0,31,0:31:93:1318,93,0,1210,93,1169:0,0,13,17 +chrX 2248628 . A AAG,AAAG, 933.02 . AS_QUALapprox=|900|735|0;AS_VarDP=1|10|6|0;BaseQRankSum=-0.183;DP=36;MQRankSum=0.000;QUALapprox=950;RAW_GT_COUNT=0,0,1;RAW_MQandDP=123894,36;ReadPosRankSum=0.511;VarDP=17 GT:AD:DP:GQ:PL:SB 1/2:1,10,6,0:17:50:950,117,50,266,0,215,684,129,282,637:0,1,8,8 +chrX 2248629 . A . . END=2248656 GT:DP:GQ:MIN_DP:PL 0/0:33:81:33:0,81,988 +chrX 2248657 . A AGAAAAG, 1589.03 . AS_QUALapprox=|1603|0;AS_VarDP=0|37|0;DP=42;QUALapprox=1603;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147494,42;VarDP=37 GT:AD:DP:GQ:PL:SB 1/1:0,37,0:37:99:1603,111,0,1603,111,1603:0,0,20,17 +chrX 2248658 . G . . END=2248673 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,114,1355 +chrX 2248674 . T . . END=2248674 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,1017 +chrX 2248675 . T . . END=2249075 GT:DP:GQ:MIN_DP:PL 0/0:55:67:55:0,67,1176 +chrX 2249076 . T C, 1880.06 . AS_QUALapprox=|1894|0;AS_VarDP=0|60|0;DP=63;QUALapprox=1894;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:1894,179,0,1894,179,1894:0,0,33,27 +chrX 2249077 . G . . END=2249190 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,100,1373 +chrX 2249191 . C CTT, 1172.03 . AS_QUALapprox=|1186|0;AS_VarDP=0|43|0;DP=58;QUALapprox=1186;RAW_GT_COUNT=0,0,1;RAW_MQandDP=199644,58;VarDP=43 GT:AD:DP:GQ:PL:SB 1/1:0,43,0:43:99:1186,129,0,1186,129,1186:0,0,26,17 +chrX 2249192 . T . . END=2249210 GT:DP:GQ:MIN_DP:PL 0/0:64:78:64:0,78,1170 +chrX 2249211 . G . . END=2249213 GT:DP:GQ:MIN_DP:PL 0/0:55:0:55:0,0,510 +chrX 2249214 . A . . END=2249481 GT:DP:GQ:MIN_DP:PL 0/0:43:38:41:0,38,1115 +chrX 2249482 . T C, 1072.06 . AS_QUALapprox=|1086|0;AS_VarDP=1|35|0;BaseQRankSum=-0.466;DP=42;MQRankSum=0.000;QUALapprox=1086;RAW_GT_COUNT=0,0,1;RAW_MQandDP=149309,42;ReadPosRankSum=0.482;VarDP=36 GT:AD:DP:GQ:PL:SB 1/1:1,35,0:36:73:1086,73,0,1089,105,1121:0,1,17,18 +chrX 2249483 . G . . END=2249512 GT:DP:GQ:MIN_DP:PL 0/0:37:71:37:0,71,1086 +chrX 2249513 . C CT, 172.60 . AS_QUALapprox=|180|0;AS_VarDP=7|17|0;BaseQRankSum=0.653;DP=52;MQRankSum=-0.629;QUALapprox=180;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172181,52;ReadPosRankSum=-1.842;VarDP=24 GT:AD:DP:GQ:PL:SB 0/1:7,17,0:24:66:180,0,66,200,112,312:1,6,9,8 +chrX 2249514 . T . . END=2249541 GT:DP:GQ:MIN_DP:PL 0/0:42:42:42:0,42,630 +chrX 2249542 . G . . END=2249542 GT:DP:GQ:MIN_DP:PL 0/0:27:0:27:0,0,690 +chrX 2249543 . A . . END=2249578 GT:DP:GQ:MIN_DP:PL 0/0:30:50:30:0,50,725 +chrX 2249579 . G A, 512.64 . AS_QUALapprox=|520|0;AS_VarDP=17|18|0;BaseQRankSum=1.086;DP=36;MQRankSum=-0.915;QUALapprox=520;RAW_GT_COUNT=0,1,0;RAW_MQandDP=127681,36;ReadPosRankSum=0.132;VarDP=35 GT:AD:DP:GQ:PL:SB 0/1:17,18,0:35:99:520,0,475,572,529,1100:5,12,7,11 +chrX 2249580 . G . . END=2250158 GT:DP:GQ:MIN_DP:PL 0/0:38:25:38:0,25,972 +chrX 2250159 . C . . END=2250160 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,674 +chrX 2250161 . C CA,CAA, 698.02 . AS_QUALapprox=|482|588|0;AS_VarDP=0|11|18|0;DP=40;QUALapprox=715;RAW_GT_COUNT=0,0,1;RAW_MQandDP=137197,40;VarDP=29 GT:AD:DP:GQ:PL:SB 1/2:0,11,18,0:29:99:715,326,233,198,0,127,625,309,194,579:0,0,15,14 +chrX 2250162 . A . . END=2250181 GT:DP:GQ:MIN_DP:PL 0/0:48:93:48:0,93,1395 +chrX 2250182 . T . . END=2250186 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,873 +chrX 2250187 . C . . END=2251281 GT:DP:GQ:MIN_DP:PL 0/0:47:29:41:0,29,998 +chrX 2251282 . T C, 816.64 . AS_QUALapprox=|824|0;AS_VarDP=29|29|0;BaseQRankSum=1.724;DP=59;MQRankSum=0.000;QUALapprox=824;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=3.578;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:29,29,0:58:99:824,0,782,911,869,1780:15,14,16,13 +chrX 2251283 . A . . END=2251915 GT:DP:GQ:MIN_DP:PL 0/0:63:98:63:0,98,1310 +chrX 2251916 . C T, 808.64 . AS_QUALapprox=|816|0;AS_VarDP=28|30|0;BaseQRankSum=1.857;DP=58;MQRankSum=0.000;QUALapprox=816;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-0.630;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:28,30,0:58:99:816,0,635,898,725,1623:16,12,16,14 +chrX 2251917 . T . . END=2251999 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 2252000 . G T, 2046.06 . AS_QUALapprox=|2060|0;AS_VarDP=0|63|0;DP=64;QUALapprox=2060;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=63 GT:AD:DP:GQ:PL:SB 1/1:0,63,0:63:99:2060,189,0,2060,189,2060:0,0,27,36 +chrX 2252001 . G . . END=2252189 GT:DP:GQ:MIN_DP:PL 0/0:55:89:55:0,89,1363 +chrX 2252190 . C T, 950.64 . AS_QUALapprox=|958|0;AS_VarDP=19|34|0;BaseQRankSum=1.446;DP=53;MQRankSum=0.000;QUALapprox=958;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=0.714;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:19,34,0:53:99:958,0,427,1015,528,1543:10,9,15,19 +chrX 2252191 . C . . END=2252238 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,106,1493 +chrX 2252239 . AAAAT A, 637.60 . AS_QUALapprox=|645|0;AS_VarDP=23|17|0;BaseQRankSum=0.000;DP=49;MQRankSum=0.000;QUALapprox=645;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=-0.213;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:23,17,0:40:99:645,0,897,714,949,1663:15,8,10,7 +chrX 2252244 . A . . END=2252434 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 2252435 . C T, 1631.06 . AS_QUALapprox=|1645|0;AS_VarDP=0|50|0;DP=51;QUALapprox=1645;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1645,149,0,1645,149,1645:0,0,27,23 +chrX 2252436 . T . . END=2252941 GT:DP:GQ:MIN_DP:PL 0/0:57:75:57:0,75,1191 +chrX 2252942 . AG A, 768.60 . AS_QUALapprox=|776|0;AS_VarDP=34|28|0;BaseQRankSum=-0.487;DP=67;MQRankSum=0.000;QUALapprox=776;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=0.042;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:34,28,0:62:99:776,0,928,877,1012,1889:19,15,17,11 +chrX 2252944 . G . . END=2253306 GT:DP:GQ:MIN_DP:PL 0/0:66:59:66:0,59,1527 +chrX 2253307 . G . . END=2253307 GT:DP:GQ:MIN_DP:PL 0/0:57:0:57:0,0,1384 +chrX 2253308 . G . . END=2253312 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 2253313 . T . . END=2253313 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,708 +chrX 2253314 . G . . END=2253323 GT:DP:GQ:MIN_DP:PL 0/0:51:39:48:0,39,1278 +chrX 2253324 . T . . END=2253324 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,650 +chrX 2253325 . T . . END=2253337 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 2253338 . C . . END=2253338 GT:DP:GQ:MIN_DP:PL 0/0:56:0:56:0,0,1290 +chrX 2253339 . G . . END=2253346 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 2253347 . A T, 766.64 . AS_QUALapprox=|774|0;AS_VarDP=31|23|0;BaseQRankSum=1.152;DP=55;MQRankSum=0.899;QUALapprox=774;RAW_GT_COUNT=0,1,0;RAW_MQandDP=196425,55;ReadPosRankSum=-0.172;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:31,23,0:54:99:0|1:2253347_A_T:774,0,1126,867,1195,2063:2253347:14,17,15,8 +chrX 2253348 . C . . END=2253356 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 2253357 . GGGAGGCGGACATGGCCGTGAGCCAAGATGGCGCCACGGCACTCCAGCCTA G, 701.60 . AS_QUALapprox=|709|0;AS_VarDP=47|22|0;BaseQRankSum=1.551;DP=74;MQRankSum=1.221;QUALapprox=709;RAW_GT_COUNT=0,1,0;RAW_MQandDP=262205,74;ReadPosRankSum=0.344;VarDP=69 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:47,22,0:69:99:0|1:2253347_A_T:709,0,1805,853,1871,2724:2253347:22,25,14,8 +chrX 2253408 . G . . END=2253436 GT:DP:GQ:MIN_DP:PL 0/0:57:87:57:0,87,1305 +chrX 2253437 . T . . END=2253438 GT:DP:GQ:MIN_DP:PL 0/0:57:5:57:0,5,2097 +chrX 2253439 . G . . END=2253439 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,99,1485 +chrX 2253440 . C . . END=2253440 GT:DP:GQ:MIN_DP:PL 0/0:60:4:60:0,4,2076 +chrX 2253441 . G . . END=2253462 GT:DP:GQ:MIN_DP:PL 0/0:79:99:79:0,108,1800 +chrX 2253463 . T . . END=2253463 GT:DP:GQ:MIN_DP:PL 0/0:72:0:72:0,0,1384 +chrX 2253464 . G . . END=2253472 GT:DP:GQ:MIN_DP:PL 0/0:78:99:78:0,120,1800 +chrX 2253473 . A . . END=2253473 GT:DP:GQ:MIN_DP:PL 0/0:69:0:69:0,0,1624 +chrX 2253474 . G . . END=2253597 GT:DP:GQ:MIN_DP:PL 0/0:77:79:77:0,79,1800 +chrX 2253598 . G T, 1010.64 . AS_QUALapprox=|1018|0;AS_VarDP=36|41|0;BaseQRankSum=-0.883;DP=81;MQRankSum=0.000;QUALapprox=1018;RAW_GT_COUNT=0,1,0;RAW_MQandDP=291600,81;ReadPosRankSum=0.843;VarDP=77 GT:AD:DP:GQ:PL:SB 0/1:36,41,0:77:99:1018,0,890,1125,1012,2138:17,19,15,26 +chrX 2253599 . A . . END=2253625 GT:DP:GQ:MIN_DP:PL 0/0:76:99:76:0,120,1800 +chrX 2253626 . C T, 2267.06 . AS_QUALapprox=|2281|0;AS_VarDP=1|71|0;BaseQRankSum=2.313;DP=76;MQRankSum=0.000;QUALapprox=2281;RAW_GT_COUNT=0,0,1;RAW_MQandDP=273600,76;ReadPosRankSum=0.241;VarDP=72 GT:AD:DP:GQ:PL:SB 1/1:1,71,0:72:99:2281,206,0,2283,213,2290:0,1,33,38 +chrX 2253627 . T . . END=2253840 GT:DP:GQ:MIN_DP:PL 0/0:76:99:76:0,120,1800 +chrX 2253841 . A C, 699.64 . AS_QUALapprox=|707|0;AS_VarDP=37|30|0;BaseQRankSum=-2.053;DP=70;MQRankSum=0.000;QUALapprox=707;RAW_GT_COUNT=0,1,0;RAW_MQandDP=252000,70;ReadPosRankSum=-1.167;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:37,30,0:67:99:707,0,1046,818,1135,1953:15,22,15,15 +chrX 2253842 . C . . END=2253985 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 2253986 . G A, 710.64 . AS_QUALapprox=|718|0;AS_VarDP=40|27|0;BaseQRankSum=0.426;DP=70;MQRankSum=0.852;QUALapprox=718;RAW_GT_COUNT=0,1,0;RAW_MQandDP=251316,70;ReadPosRankSum=-1.049;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:40,27,0:67:99:718,0,1119,837,1201,2038:14,26,16,11 +chrX 2253987 . G . . END=2254058 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 2254059 . C CA, 582.60 . AS_QUALapprox=|590|0;AS_VarDP=27|27|0;BaseQRankSum=-0.892;DP=63;MQRankSum=1.037;QUALapprox=590;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226116,63;ReadPosRankSum=0.138;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:27,27,0:54:99:590,0,593,671,673,1344:12,15,16,11 +chrX 2254060 . A . . END=2254708 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 2254709 . C T, 811.64 . AS_QUALapprox=|819|0;AS_VarDP=36|32|0;BaseQRankSum=1.289;DP=71;MQRankSum=1.364;QUALapprox=819;RAW_GT_COUNT=0,1,0;RAW_MQandDP=250170,71;ReadPosRankSum=-0.768;VarDP=68 GT:AD:DP:GQ:PL:SB 0/1:36,32,0:68:99:819,0,867,926,963,1889:21,15,19,13 +chrX 2254710 . G . . END=2254944 GT:DP:GQ:MIN_DP:PL 0/0:45:36:30:0,36,765 +chrX 2254945 . CG C, 232.60 . AS_QUALapprox=|240|0;AS_VarDP=18|10|0;BaseQRankSum=-0.132;DP=32;MQRankSum=0.000;QUALapprox=240;RAW_GT_COUNT=0,1,0;RAW_MQandDP=115200,32;ReadPosRankSum=-0.648;VarDP=28 GT:AD:DP:GQ:PL:SB 0/1:18,10,0:28:99:240,0,588,295,618,912:9,9,2,8 +chrX 2254947 . C . . END=2254977 GT:DP:GQ:MIN_DP:PL 0/0:39:72:39:0,72,1007 +chrX 2254978 . G . . END=2254979 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,774 +chrX 2254980 . G . . END=2255296 GT:DP:GQ:MIN_DP:PL 0/0:49:29:36:0,29,1109 +chrX 2255297 . C T, 744.64 . AS_QUALapprox=|752|0;AS_VarDP=30|29|0;BaseQRankSum=0.010;DP=61;MQRankSum=0.000;QUALapprox=752;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-1.236;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:30,29,0:59:99:752,0,781,841,868,1709:16,14,12,17 +chrX 2255298 . G . . END=2255310 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 2255311 . T C, 667.64 . AS_QUALapprox=|675|0;AS_VarDP=30|26|0;BaseQRankSum=-0.266;DP=58;MQRankSum=0.000;QUALapprox=675;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=0.953;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:30,26,0:56:99:675,0,814,766,892,1658:15,15,12,14 +chrX 2255312 . A . . END=2255757 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,112,1564 +chrX 2255758 . C T, 1107.64 . AS_QUALapprox=|1115|0;AS_VarDP=18|42|0;BaseQRankSum=-1.543;DP=60;MQRankSum=0.000;QUALapprox=1115;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=0.379;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:18,42,0:60:99:1115,0,437,1169,561,1731:8,10,16,26 +chrX 2255759 . A . . END=2256166 GT:DP:GQ:MIN_DP:PL 0/0:58:88:58:0,88,1443 +chrX 2256167 . T A, 811.64 . AS_QUALapprox=|819|0;AS_VarDP=24|33|0;BaseQRankSum=-0.141;DP=60;MQRankSum=0.000;QUALapprox=819;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=-0.590;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:24,33,0:57:99:819,0,563,891,662,1552:12,12,15,18 +chrX 2256168 . A . . END=2256336 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,118,1484 +chrX 2256337 . C T, 696.64 . AS_QUALapprox=|704|0;AS_VarDP=19|26|0;BaseQRankSum=-0.225;DP=45;MQRankSum=0.000;QUALapprox=704;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=-0.839;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:19,26,0:45:99:704,0,481,761,559,1319:9,10,18,8 +chrX 2256338 . T . . END=2256479 GT:DP:GQ:MIN_DP:PL 0/0:54:75:54:0,75,1519 +chrX 2256480 . G C, 607.64 . AS_QUALapprox=|615|0;AS_VarDP=29|23|0;BaseQRankSum=2.125;DP=53;MQRankSum=-1.576;QUALapprox=615;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187066,53;ReadPosRankSum=-1.484;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:29,23,0:52:99:615,0,682,700,751,1452:17,12,13,10 +chrX 2256481 . A . . END=2256790 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 2256791 . C CA, 627.60 . AS_QUALapprox=|635|0;AS_VarDP=25|30|0;BaseQRankSum=-1.528;DP=63;MQRankSum=0.000;QUALapprox=635;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=1.277;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:25,30,0:55:99:635,0,530,710,620,1330:10,15,19,11 +chrX 2256792 . A . . END=2256853 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 2256854 . TC T, 2051.03 . AS_QUALapprox=|2065|0;AS_VarDP=0|64|0;DP=70;QUALapprox=2065;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;VarDP=64 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:2065,193,0,2065,193,2065:0,0,32,32 +chrX 2256856 . C . . END=2256858 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 2256859 . C . . END=2256859 GT:DP:GQ:MIN_DP:PL 0/0:68:16:68:0,16,1877 +chrX 2256860 . A . . END=2257083 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 2257084 . T C, 860.64 . AS_QUALapprox=|868|0;AS_VarDP=22|34|0;BaseQRankSum=-1.605;DP=58;MQRankSum=0.000;QUALapprox=868;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-0.966;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:22,34,0:56:99:868,0,557,934,659,1593:8,14,16,18 +chrX 2257085 . A . . END=2257333 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 2257334 . C T, 890.64 . AS_QUALapprox=|898|0;AS_VarDP=20|33|0;BaseQRankSum=-0.366;DP=57;MQRankSum=0.000;QUALapprox=898;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-0.431;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:20,33,0:53:99:898,0,507,958,605,1563:11,9,18,15 +chrX 2257335 . G . . END=2257929 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,113,1618 +chrX 2257930 . G C, 675.64 . AS_QUALapprox=|683|0;AS_VarDP=25|27|0;BaseQRankSum=-1.433;DP=56;MQRankSum=0.000;QUALapprox=683;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-0.220;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:25,27,0:52:99:683,0,642,757,723,1480:14,11,12,15 +chrX 2257931 . A . . END=2258300 GT:DP:GQ:MIN_DP:PL 0/0:61:85:61:0,85,1506 +chrX 2258301 . A G, 697.64 . AS_QUALapprox=|705|0;AS_VarDP=22|26|0;BaseQRankSum=0.981;DP=49;MQRankSum=-0.878;QUALapprox=705;RAW_GT_COUNT=0,1,0;RAW_MQandDP=174916,49;ReadPosRankSum=0.600;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:22,26,0:48:99:705,0,546,771,624,1394:9,13,13,13 +chrX 2258302 . G . . END=2259108 GT:DP:GQ:MIN_DP:PL 0/0:59:90:59:0,90,1513 +chrX 2259109 . C G, 679.64 . AS_QUALapprox=|687|0;AS_VarDP=22|27|0;BaseQRankSum=-0.501;DP=49;MQRankSum=0.000;QUALapprox=687;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=0.714;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:22,27,0:49:99:687,0,579,753,659,1412:15,7,15,12 +chrX 2259110 . T . . END=2259271 GT:DP:GQ:MIN_DP:PL 0/0:55:88:55:0,88,1410 +chrX 2259272 . C . . END=2259272 GT:DP:GQ:MIN_DP:PL 0/0:39:4:39:0,4,968 +chrX 2259273 . A . . END=2259364 GT:DP:GQ:MIN_DP:PL 0/0:54:29:51:0,29,1349 +chrX 2259365 . GATATATATAGATATAT G, 1323.60 . AS_QUALapprox=|1331|0;AS_VarDP=19|33|0;BaseQRankSum=0.647;DP=57;MQRankSum=-1.055;QUALapprox=1331;RAW_GT_COUNT=0,1,0;RAW_MQandDP=204165,57;ReadPosRankSum=0.192;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:19,33,0:52:99:0|1:2259365_GATATATATAGATATAT_G:1331,0,685,1388,787,2175:2259365:7,12,16,17 +chrX 2259375 . G *,GAT, 629.01 . AS_QUALapprox=|0|678|0;AS_VarDP=0|33|16|0;DP=52;QUALapprox=2006;RAW_GT_COUNT=0,0,1;RAW_MQandDP=186165,52;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 2|1:0,33,16,0:49:99:1|0:2259365_GATATATATAGATATAT_G:2006,639,687,1376,0,1328,2022,720,1386,2089:2259365:0,0,22,27 +chrX 2259382 . A . . END=2259394 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 2259395 . GAT G,GATAT, 2062.02 . AS_QUALapprox=|1581|606|0;AS_VarDP=0|37|14|0;DP=52;QUALapprox=2079;RAW_GT_COUNT=0,0,1;RAW_MQandDP=186165,52;VarDP=51 GT:AD:DP:GQ:PL:SB 1/2:0,37,14,0:51:99:2079,569,498,1515,0,1473,2086,592,1518,2103:0,0,22,29 +chrX 2259398 . A . . END=2259400 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 2259401 . T G, 1426.64 . AS_QUALapprox=|1434|0;AS_VarDP=14|36|0;BaseQRankSum=0.282;DP=50;MQRankSum=-0.859;QUALapprox=1434;RAW_GT_COUNT=0,1,0;RAW_MQandDP=178965,50;ReadPosRankSum=0.919;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:14,36,0:50:99:0|1:2259365_GATATATATAGATATAT_G:1434,0,459,1476,567,2043:2259365:4,10,16,20 +chrX 2259402 . A . . END=2259621 GT:DP:GQ:MIN_DP:PL 0/0:50:87:50:0,87,1369 +chrX 2259622 . G T, 1881.06 . AS_QUALapprox=|1895|0;AS_VarDP=0|57|0;DP=59;QUALapprox=1895;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1895,171,0,1895,171,1895:0,0,30,27 +chrX 2259623 . T . . END=2259671 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 2259672 . G A, 665.64 . AS_QUALapprox=|673|0;AS_VarDP=31|26|0;BaseQRankSum=1.135;DP=61;MQRankSum=0.951;QUALapprox=673;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219481,61;ReadPosRankSum=-1.354;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:31,26,0:57:99:673,0,766,765,845,1610:18,13,15,11 +chrX 2259673 . T . . END=2259794 GT:DP:GQ:MIN_DP:PL 0/0:56:49:56:0,49,1385 +chrX 2259795 . A . . END=2259795 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,1101 +chrX 2259796 . C . . END=2259911 GT:DP:GQ:MIN_DP:PL 0/0:46:79:46:0,79,1306 +chrX 2259912 . G T, 1535.06 . AS_QUALapprox=|1549|0;AS_VarDP=0|46|0;DP=51;QUALapprox=1549;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1549,138,0,1549,138,1549:0,0,27,19 +chrX 2259913 . G . . END=2260010 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 2260011 . G A, 673.64 . AS_QUALapprox=|681|0;AS_VarDP=32|27|0;BaseQRankSum=1.117;DP=59;MQRankSum=0.000;QUALapprox=681;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-0.578;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:32,27,0:59:99:681,0,795,777,876,1653:18,14,19,8 +chrX 2260012 . T . . END=2260182 GT:DP:GQ:MIN_DP:PL 0/0:43:39:41:0,39,1182 +chrX 2260183 . C T, 769.64 . AS_QUALapprox=|777|0;AS_VarDP=20|27|0;BaseQRankSum=0.334;DP=50;MQRankSum=-0.818;QUALapprox=777;RAW_GT_COUNT=0,1,0;RAW_MQandDP=179001,50;ReadPosRankSum=-0.549;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:20,27,0:47:99:777,0,534,837,615,1452:8,12,11,16 +chrX 2260184 . C . . END=2260594 GT:DP:GQ:MIN_DP:PL 0/0:49:48:49:0,48,1142 +chrX 2260595 . G A, 533.64 . AS_QUALapprox=|541|0;AS_VarDP=28|21|0;BaseQRankSum=-0.090;DP=51;MQRankSum=-1.113;QUALapprox=541;RAW_GT_COUNT=0,1,0;RAW_MQandDP=182704,51;ReadPosRankSum=-1.243;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:28,21,0:49:99:541,0,776,625,839,1464:12,16,8,13 +chrX 2260596 . A . . END=2260664 GT:DP:GQ:MIN_DP:PL 0/0:47:97:47:0,97,1309 +chrX 2260665 . T G, 749.64 . AS_QUALapprox=|757|0;AS_VarDP=24|28|0;BaseQRankSum=0.314;DP=54;MQRankSum=0.000;QUALapprox=757;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=0.533;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:24,28,0:52:99:757,0,615,829,699,1528:10,14,15,13 +chrX 2260666 . G . . END=2260723 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 2260724 . G C, 824.64 . AS_QUALapprox=|832|0;AS_VarDP=24|31|0;BaseQRankSum=-1.638;DP=56;MQRankSum=0.000;QUALapprox=832;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-0.552;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:24,31,0:55:99:832,0,649,904,742,1646:9,15,17,14 +chrX 2260725 . T . . END=2261080 GT:DP:GQ:MIN_DP:PL 0/0:63:88:63:0,88,1554 +chrX 2261081 . A G, 638.64 . AS_QUALapprox=|646|0;AS_VarDP=26|25|0;BaseQRankSum=-2.860;DP=53;MQRankSum=0.000;QUALapprox=646;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=1.348;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:26,25,0:51:99:646,0,750,724,826,1549:19,7,14,11 +chrX 2261082 . T . . END=2261431 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 2261432 . T C, 1866.06 . AS_QUALapprox=|1880|0;AS_VarDP=0|59|0;DP=59;QUALapprox=1880;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1880,177,0,1880,177,1880:0,0,27,32 +chrX 2261433 . G . . END=2261627 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 2261628 . T C, 773.64 . AS_QUALapprox=|781|0;AS_VarDP=34|32|0;BaseQRankSum=-2.651;DP=70;MQRankSum=0.000;QUALapprox=781;RAW_GT_COUNT=0,1,0;RAW_MQandDP=252000,70;ReadPosRankSum=-0.116;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:34,32,0:66:99:781,0,943,883,1040,1923:16,18,15,17 +chrX 2261629 . G . . END=2261677 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 2261678 . A G, 854.64 . AS_QUALapprox=|862|0;AS_VarDP=19|31|0;BaseQRankSum=-1.806;DP=51;MQRankSum=0.000;QUALapprox=862;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-0.910;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:19,31,0:50:99:862,0,511,919,603,1523:8,11,15,16 +chrX 2261679 . G . . END=2261882 GT:DP:GQ:MIN_DP:PL 0/0:50:84:50:0,84,1360 +chrX 2261883 . G T, 681.64 . AS_QUALapprox=|689|0;AS_VarDP=20|26|0;BaseQRankSum=-0.294;DP=48;MQRankSum=0.000;QUALapprox=689;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=1.474;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:20,26,0:46:99:689,0,517,750,594,1344:12,8,13,13 +chrX 2261884 . G . . END=2262716 GT:DP:GQ:MIN_DP:PL 0/0:60:57:60:0,57,1390 +chrX 2262717 . T C, 690.64 . AS_QUALapprox=|698|0;AS_VarDP=29|26|0;BaseQRankSum=-0.540;DP=55;MQRankSum=0.000;QUALapprox=698;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=0.987;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:29,26,0:55:99:698,0,813,785,891,1676:17,12,12,14 +chrX 2262718 . T . . END=2262834 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 2262835 . CAG C, 2435.03 . AS_QUALapprox=|2449|0;AS_VarDP=0|55|0;DP=55;QUALapprox=2449;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:2449,166,0,2449,166,2449:0,0,30,25 +chrX 2262838 . A . . END=2262866 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 2262867 . A G, 1832.06 . AS_QUALapprox=|1846|0;AS_VarDP=0|56|0;DP=56;QUALapprox=1846;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1846,168,0,1846,168,1846:0,0,31,25 +chrX 2262868 . A . . END=2263285 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 2263286 . T C, 684.64 . AS_QUALapprox=|692|0;AS_VarDP=35|30|0;BaseQRankSum=-1.906;DP=68;MQRankSum=0.000;QUALapprox=692;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=0.902;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:35,30,0:65:99:692,0,963,798,1051,1849:15,20,13,17 +chrX 2263287 . G . . END=2263511 GT:DP:GQ:MIN_DP:PL 0/0:61:70:61:0,70,1359 +chrX 2263512 . CT C, 143.60 . AS_QUALapprox=|151|0;AS_VarDP=23|14|0;BaseQRankSum=-0.153;DP=51;MQRankSum=0.836;QUALapprox=151;RAW_GT_COUNT=0,1,0;RAW_MQandDP=181600,51;ReadPosRankSum=1.974;VarDP=37 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,14,0:37:99:0|1:2263512_CT_C:151,0,419,219,459,678:2263512:16,7,5,9 +chrX 2263514 . T . . END=2264066 GT:DP:GQ:MIN_DP:PL 0/0:56:43:50:0,43,1150 +chrX 2264067 . T C, 1678.06 . AS_QUALapprox=|1692|0;AS_VarDP=0|53|0;DP=56;QUALapprox=1692;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1692,158,0,1692,158,1692:0,0,22,31 +chrX 2264068 . C . . END=2264316 GT:DP:GQ:MIN_DP:PL 0/0:67:36:65:0,36,1597 +chrX 2264317 . C T, 698.64 . AS_QUALapprox=|706|0;AS_VarDP=34|31|0;BaseQRankSum=-1.421;DP=69;MQRankSum=-0.142;QUALapprox=706;RAW_GT_COUNT=0,1,0;RAW_MQandDP=245471,69;ReadPosRankSum=-1.110;VarDP=65 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:34,31,0:65:99:0|1:2264317_C_T:706,0,936,808,1028,1836:2264317:19,15,12,19 +chrX 2264318 . C . . END=2264457 GT:DP:GQ:MIN_DP:PL 0/0:61:30:47:0,30,1257 +chrX 2264458 . T . . END=2264458 GT:DP:GQ:MIN_DP:PL 0/0:53:0:53:0,0,1227 +chrX 2264459 . C . . END=2264470 GT:DP:GQ:MIN_DP:PL 0/0:56:91:56:0,91,1548 +chrX 2264471 . A . . END=2264471 GT:DP:GQ:MIN_DP:PL 0/0:55:0:55:0,0,1237 +chrX 2264472 . G . . END=2264693 GT:DP:GQ:MIN_DP:PL 0/0:59:21:53:0,21,1325 +chrX 2264694 . C T, 925.64 . AS_QUALapprox=|933|0;AS_VarDP=17|36|0;BaseQRankSum=0.513;DP=55;MQRankSum=0.000;QUALapprox=933;RAW_GT_COUNT=0,1,0;RAW_MQandDP=195129,55;ReadPosRankSum=0.801;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:17,36,0:53:99:933,0,333,983,440,1424:6,11,25,11 +chrX 2264695 . G . . END=2264738 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 2264739 . A C, 529.64 . AS_QUALapprox=|537|0;AS_VarDP=31|22|0;BaseQRankSum=-0.651;DP=54;MQRankSum=0.000;QUALapprox=537;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=-0.731;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:31,22,0:53:99:537,0,869,631,934,1565:19,12,12,10 +chrX 2264740 . G . . END=2264753 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 2264754 . T . . END=2264754 GT:DP:GQ:MIN_DP:PL 0/0:66:0:66:0,0,920 +chrX 2264755 . A . . END=2264776 GT:DP:GQ:MIN_DP:PL 0/0:78:32:77:0,32,1800 +chrX 2264777 . T . . END=2264777 GT:DP:GQ:MIN_DP:PL 0/0:75:0:75:0,0,1603 +chrX 2264778 . C . . END=2264785 GT:DP:GQ:MIN_DP:PL 0/0:77:81:77:0,81,1800 +chrX 2264786 . A . . END=2264786 GT:DP:GQ:MIN_DP:PL 0/0:75:0:75:0,0,1682 +chrX 2264787 . C . . END=2264796 GT:DP:GQ:MIN_DP:PL 0/0:82:35:78:0,35,1800 +chrX 2264797 . C . . END=2264798 GT:DP:GQ:MIN_DP:PL 0/0:77:0:77:0,0,1740 +chrX 2264799 . T . . END=2264799 GT:DP:GQ:MIN_DP:PL 0/0:91:99:91:0,120,1800 +chrX 2264800 . G . . END=2264801 GT:DP:GQ:MIN_DP:PL 0/0:81:0:81:0,0,1891 +chrX 2264802 . C . . END=2264802 GT:DP:GQ:MIN_DP:PL 0/0:93:99:93:0,120,1800 +chrX 2264803 . C . . END=2264809 GT:DP:GQ:MIN_DP:PL 0/0:87:0:87:0,0,1939 +chrX 2264810 . C . . END=2264810 GT:DP:GQ:MIN_DP:PL 0/0:95:99:95:0,120,1800 +chrX 2264811 . A . . END=2264811 GT:DP:GQ:MIN_DP:PL 0/0:86:0:86:0,0,1805 +chrX 2264812 . A . . END=2264815 GT:DP:GQ:MIN_DP:PL 0/0:91:99:91:0,120,1800 +chrX 2264816 . T . . END=2264816 GT:DP:GQ:MIN_DP:PL 0/0:83:0:83:0,0,1702 +chrX 2264817 . C . . END=2264819 GT:DP:GQ:MIN_DP:PL 0/0:92:99:92:0,120,1800 +chrX 2264820 . G . . END=2264820 GT:DP:GQ:MIN_DP:PL 0/0:89:0:89:0,0,1812 +chrX 2264821 . A . . END=2264827 GT:DP:GQ:MIN_DP:PL 0/0:94:99:94:0,120,1800 +chrX 2264828 . A . . END=2264828 GT:DP:GQ:MIN_DP:PL 0/0:88:0:88:0,0,1866 +chrX 2264829 . G . . END=2264835 GT:DP:GQ:MIN_DP:PL 0/0:91:99:91:0,120,1800 +chrX 2264836 . C . . END=2264836 GT:DP:GQ:MIN_DP:PL 0/0:81:0:81:0,0,1661 +chrX 2264837 . G . . END=2264838 GT:DP:GQ:MIN_DP:PL 0/0:89:99:89:0,120,1800 +chrX 2264839 . T . . END=2264839 GT:DP:GQ:MIN_DP:PL 0/0:75:0:75:0,0,1531 +chrX 2264840 . C . . END=2264840 GT:DP:GQ:MIN_DP:PL 0/0:83:99:83:0,120,1800 +chrX 2264841 . T . . END=2264841 GT:DP:GQ:MIN_DP:PL 0/0:73:0:73:0,0,1623 +chrX 2264842 . C . . END=2264849 GT:DP:GQ:MIN_DP:PL 0/0:88:99:88:0,120,1800 +chrX 2264850 . C . . END=2264852 GT:DP:GQ:MIN_DP:PL 0/0:78:0:78:0,0,1677 +chrX 2264853 . T . . END=2264856 GT:DP:GQ:MIN_DP:PL 0/0:93:99:93:0,120,1800 +chrX 2264857 . C . . END=2264857 GT:DP:GQ:MIN_DP:PL 0/0:82:0:82:0,0,1945 +chrX 2264858 . A . . END=2264861 GT:DP:GQ:MIN_DP:PL 0/0:97:99:97:0,120,1800 +chrX 2264862 . G . . END=2264862 GT:DP:GQ:MIN_DP:PL 0/0:82:0:82:0,0,1796 +chrX 2264863 . A . . END=2264863 GT:DP:GQ:MIN_DP:PL 0/0:91:99:91:0,120,1800 +chrX 2264864 . T TGCAGGGAGCACTGTACGCAGAGCACTTGTGCCAAGCACAC, 1595.60 . AS_QUALapprox=|1603|0;AS_VarDP=22|41|0;BaseQRankSum=-0.953;DP=77;MQRankSum=-1.021;QUALapprox=1603;RAW_GT_COUNT=0,1,0;RAW_MQandDP=273865,77;ReadPosRankSum=0.036;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:22,41,0:63:99:1603,0,797,1675,920,2595:10,12,18,23 +chrX 2264865 . G . . END=2264953 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,103,1351 +chrX 2264954 . C T, 855.64 . AS_QUALapprox=|863|0;AS_VarDP=22|32|0;BaseQRankSum=0.247;DP=54;MQRankSum=0.000;QUALapprox=863;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=1.497;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:22,32,0:54:99:863,0,466,926,562,1488:11,11,17,15 +chrX 2264955 . G . . END=2264958 GT:DP:GQ:MIN_DP:PL 0/0:69:0:69:0,0,1608 +chrX 2264959 . C . . END=2264959 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 2264960 . C . . END=2264966 GT:DP:GQ:MIN_DP:PL 0/0:69:0:69:0,0,1712 +chrX 2264967 . C . . END=2264968 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 2264969 . T . . END=2264972 GT:DP:GQ:MIN_DP:PL 0/0:66:0:66:0,0,1577 +chrX 2264973 . C . . END=2264974 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 2264975 . C . . END=2264980 GT:DP:GQ:MIN_DP:PL 0/0:66:0:66:0,0,1607 +chrX 2264981 . A . . END=2265048 GT:DP:GQ:MIN_DP:PL 0/0:66:32:62:0,32,1343 +chrX 2265049 . A . . END=2265049 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,1066 +chrX 2265050 . C . . END=2265078 GT:DP:GQ:MIN_DP:PL 0/0:45:64:45:0,64,949 +chrX 2265079 . T . . END=2265079 GT:DP:GQ:MIN_DP:PL 0/0:34:13:34:0,13,813 +chrX 2265080 . C . . END=2265198 GT:DP:GQ:MIN_DP:PL 0/0:21:35:18:0,35,606 +chrX 2265199 . C . . END=2265200 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,342 +chrX 2265201 . C . . END=2265208 GT:DP:GQ:MIN_DP:PL 0/0:16:39:16:0,39,585 +chrX 2265209 . G . . END=2265209 GT:DP:GQ:MIN_DP:PL 0/0:14:17:14:0,17,357 +chrX 2265210 . C . . END=2265215 GT:DP:GQ:MIN_DP:PL 0/0:13:33:13:0,33,342 +chrX 2265216 . G . . END=2265216 GT:DP:GQ:MIN_DP:PL 0/0:13:14:13:0,14,352 +chrX 2265217 . C . . END=2265233 GT:DP:GQ:MIN_DP:PL 0/0:12:22:11:0,22,338 +chrX 2265234 . C . . END=2265234 GT:DP:GQ:MIN_DP:PL 0/0:11:8:11:0,8,303 +chrX 2265235 . A . . END=2265239 GT:DP:GQ:MIN_DP:PL 0/0:10:21:10:0,21,293 +chrX 2265240 . T . . END=2265240 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,135 +chrX 2265241 . C . . END=2265244 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,213 +chrX 2265245 . A . . END=2265291 GT:DP:GQ:MIN_DP:PL 0/0:6:0:6:0,0,70 +chrX 2265292 . G . . END=2265298 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,223 +chrX 2265299 . C . . END=2265300 GT:DP:GQ:MIN_DP:PL 0/0:6:15:6:0,15,174 +chrX 2265301 . G . . END=2265302 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,223 +chrX 2265303 . C . . END=2265303 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,209 +chrX 2265304 . C . . END=2265304 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,233 +chrX 2265305 . C . . END=2265305 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,188 +chrX 2265306 . C . . END=2265319 GT:DP:GQ:MIN_DP:PL 0/0:10:24:9:0,24,237 +chrX 2265320 . T . . END=2265321 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,188 +chrX 2265322 . A . . END=2265323 GT:DP:GQ:MIN_DP:PL 0/0:11:30:11:0,30,307 +chrX 2265324 . C . . END=2265324 GT:DP:GQ:MIN_DP:PL 0/0:9:2:9:0,2,243 +chrX 2265325 . A . . END=2265327 GT:DP:GQ:MIN_DP:PL 0/0:10:30:10:0,30,308 +chrX 2265328 . C . . END=2265329 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,268 +chrX 2265330 . C . . END=2265338 GT:DP:GQ:MIN_DP:PL 0/0:14:28:13:0,28,397 +chrX 2265339 . C . . END=2265339 GT:DP:GQ:MIN_DP:PL 0/0:13:4:13:0,4,362 +chrX 2265340 . T . . END=2265361 GT:DP:GQ:MIN_DP:PL 0/0:15:20:11:0,20,382 +chrX 2265362 . A . . END=2265362 GT:DP:GQ:MIN_DP:PL 0/0:19:0:19:0,0,522 +chrX 2265363 . G . . END=2265407 GT:DP:GQ:MIN_DP:PL 0/0:21:28:19:0,28,600 +chrX 2265408 . C . . END=2265408 GT:DP:GQ:MIN_DP:PL 0/0:20:1:20:0,1,536 +chrX 2265409 . G . . END=2265422 GT:DP:GQ:MIN_DP:PL 0/0:18:39:17:0,39,585 +chrX 2265423 . C . . END=2265423 GT:DP:GQ:MIN_DP:PL 0/0:15:0:15:0,0,382 +chrX 2265424 . C . . END=2265434 GT:DP:GQ:MIN_DP:PL 0/0:15:23:13:0,23,383 +chrX 2265435 . A . . END=2265435 GT:DP:GQ:MIN_DP:PL 0/0:13:14:13:0,14,372 +chrX 2265436 . G . . END=2265438 GT:DP:GQ:MIN_DP:PL 0/0:13:36:13:0,36,391 +chrX 2265439 . T . . END=2265440 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,352 +chrX 2265441 . C . . END=2265478 GT:DP:GQ:MIN_DP:PL 0/0:20:22:15:0,22,507 +chrX 2265479 . T . . END=2265479 GT:DP:GQ:MIN_DP:PL 0/0:19:18:19:0,18,552 +chrX 2265480 . C . . END=2265597 GT:DP:GQ:MIN_DP:PL 0/0:22:28:19:0,28,519 +chrX 2265598 . G . . END=2265598 GT:DP:GQ:MIN_DP:PL 0/0:27:0:27:0,0,422 +chrX 2265599 . T . . END=2265599 GT:DP:GQ:MIN_DP:PL 0/0:27:21:27:0,21,658 +chrX 2265600 . A . . END=2265600 GT:DP:GQ:MIN_DP:PL 0/0:28:10:28:0,10,664 +chrX 2265601 . C . . END=2265622 GT:DP:GQ:MIN_DP:PL 0/0:25:40:25:0,40,659 +chrX 2265623 . A . . END=2265623 GT:DP:GQ:MIN_DP:PL 0/0:22:0:22:0,0,406 +chrX 2265624 . C . . END=2265637 GT:DP:GQ:MIN_DP:PL 0/0:25:63:25:0,63,739 +chrX 2265638 . G . . END=2265640 GT:DP:GQ:MIN_DP:PL 0/0:23:0:23:0,0,461 +chrX 2265641 . C . . END=2265641 GT:DP:GQ:MIN_DP:PL 0/0:22:63:22:0,63,945 +chrX 2265642 . A . . END=2265642 GT:DP:GQ:MIN_DP:PL 0/0:22:0:22:0,0,535 +chrX 2265643 . G . . END=2265662 GT:DP:GQ:MIN_DP:PL 0/0:26:53:26:0,53,714 +chrX 2265663 . A . . END=2265663 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,544 +chrX 2265664 . C . . END=2265679 GT:DP:GQ:MIN_DP:PL 0/0:31:49:31:0,49,823 +chrX 2265680 . T . . END=2265680 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,823 +chrX 2265681 . C . . END=2265681 GT:DP:GQ:MIN_DP:PL 0/0:34:67:34:0,67,962 +chrX 2265682 . G A, 17.63 . AS_QUALapprox=|25|0;AS_VarDP=17|3|0;BaseQRankSum=-0.117;DP=22;MQRankSum=-0.812;QUALapprox=25;RAW_GT_COUNT=0,1,0;RAW_MQandDP=65735,22;ReadPosRankSum=0.689;VarDP=20 GT:AD:DP:GQ:PL:SB 0/1:17,3,0:20:25:25,0,406,75,415,490:9,8,1,2 +chrX 2265683 . G . . END=2265698 GT:DP:GQ:MIN_DP:PL 0/0:37:62:37:0,62,992 +chrX 2265699 . C . . END=2265699 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,441 +chrX 2265700 . T . . END=2265720 GT:DP:GQ:MIN_DP:PL 0/0:40:73:40:0,73,1094 +chrX 2265721 . T . . END=2265721 GT:DP:GQ:MIN_DP:PL 0/0:37:2:37:0,2,836 +chrX 2265722 . A . . END=2265760 GT:DP:GQ:MIN_DP:PL 0/0:37:32:32:0,32,864 +chrX 2265761 . T . . END=2265761 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,500 +chrX 2265762 . G . . END=2265794 GT:DP:GQ:MIN_DP:PL 0/0:36:74:36:0,74,957 +chrX 2265795 . G . . END=2265795 GT:DP:GQ:MIN_DP:PL 0/0:33:4:33:0,4,777 +chrX 2265796 . G . . END=2265837 GT:DP:GQ:MIN_DP:PL 0/0:35:21:35:0,21,796 +chrX 2265838 . G A, 298.64 . AS_QUALapprox=|306|0;AS_VarDP=21|15|0;BaseQRankSum=-0.631;DP=36;MQRankSum=1.208;QUALapprox=306;RAW_GT_COUNT=0,1,0;RAW_MQandDP=91375,36;ReadPosRankSum=-0.819;VarDP=36 GT:AD:DP:GQ:PL:SB 0/1:21,15,0:36:99:306,0,496,367,540,907:9,12,10,5 +chrX 2265839 . T . . END=2265875 GT:DP:GQ:MIN_DP:PL 0/0:39:90:39:0,90,921 +chrX 2265876 . A . . END=2265876 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,817 +chrX 2265877 . T . . END=2265982 GT:DP:GQ:MIN_DP:PL 0/0:46:45:46:0,45,926 +chrX 2265983 . T C, 0.02 . AS_QUALapprox=|1|0;AS_VarDP=36|6|0;BaseQRankSum=-1.436;DP=44;MQRankSum=0.969;QUALapprox=1;RAW_GT_COUNT=0,1,0;RAW_MQandDP=99105,44;ReadPosRankSum=2.086;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:36,6,0:42:1:1,0,868,106,885,991:17,19,2,4 +chrX 2265984 . C . . END=2266022 GT:DP:GQ:MIN_DP:PL 0/0:53:28:47:0,28,1135 +chrX 2266023 . T . . END=2266023 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,867 +chrX 2266024 . C . . END=2266059 GT:DP:GQ:MIN_DP:PL 0/0:57:40:57:0,40,1393 +chrX 2266060 . T . . END=2266060 GT:DP:GQ:MIN_DP:PL 0/0:54:0:54:0,0,1391 +chrX 2266061 . G . . END=2266088 GT:DP:GQ:MIN_DP:PL 0/0:52:25:48:0,25,1290 +chrX 2266089 . G . . END=2266089 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1235 +chrX 2266090 . C . . END=2266142 GT:DP:GQ:MIN_DP:PL 0/0:46:34:44:0,34,1162 +chrX 2266143 . A . . END=2266143 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,956 +chrX 2266144 . C . . END=2266167 GT:DP:GQ:MIN_DP:PL 0/0:49:76:49:0,76,1315 +chrX 2266168 . T . . END=2266168 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,1062 +chrX 2266169 . G . . END=2266199 GT:DP:GQ:MIN_DP:PL 0/0:47:41:47:0,41,1046 +chrX 2266200 . T . . END=2266200 GT:DP:GQ:MIN_DP:PL 0/0:39:4:39:0,4,999 +chrX 2266201 . T C, 112.64 . AS_QUALapprox=|120|0;AS_VarDP=21|9|0;BaseQRankSum=-1.850;DP=33;MQRankSum=0.591;QUALapprox=120;RAW_GT_COUNT=0,1,0;RAW_MQandDP=90989,33;ReadPosRankSum=1.381;VarDP=30 GT:AD:DP:GQ:PL:SB 0/1:21,9,0:30:99:120,0,537,181,562,744:9,12,7,2 +chrX 2266202 . G . . END=2266234 GT:DP:GQ:MIN_DP:PL 0/0:38:42:38:0,42,892 +chrX 2266235 . G . . END=2266235 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,784 +chrX 2266236 . G . . END=2266239 GT:DP:GQ:MIN_DP:PL 0/0:39:51:39:0,51,1056 +chrX 2266240 . C . . END=2266240 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,859 +chrX 2266241 . C . . END=2266264 GT:DP:GQ:MIN_DP:PL 0/0:40:74:40:0,74,1096 +chrX 2266265 . T . . END=2266265 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,810 +chrX 2266266 . C . . END=2266274 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,111,1665 +chrX 2266275 . G . . END=2266275 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,857 +chrX 2266276 . G . . END=2266315 GT:DP:GQ:MIN_DP:PL 0/0:45:59:45:0,59,1085 +chrX 2266316 . A . . END=2266316 GT:DP:GQ:MIN_DP:PL 0/0:41:9:41:0,9,906 +chrX 2266317 . T . . END=2266319 GT:DP:GQ:MIN_DP:PL 0/0:40:92:40:0,92,1084 +chrX 2266320 . T . . END=2266320 GT:DP:GQ:MIN_DP:PL 0/0:40:1:40:0,1,1012 +chrX 2266321 . C . . END=2266453 GT:DP:GQ:MIN_DP:PL 0/0:41:22:36:0,22,947 +chrX 2266454 . A . . END=2266454 GT:DP:GQ:MIN_DP:PL 0/0:32:13:32:0,13,766 +chrX 2266455 . A . . END=2266479 GT:DP:GQ:MIN_DP:PL 0/0:33:59:33:0,59,931 +chrX 2266480 . T . . END=2266480 GT:DP:GQ:MIN_DP:PL 0/0:34:4:34:0,4,874 +chrX 2266481 . C . . END=2266521 GT:DP:GQ:MIN_DP:PL 0/0:39:40:39:0,40,932 +chrX 2266522 . G A, 932.06 . AS_QUALapprox=|946|0;AS_VarDP=0|30|0;DP=31;QUALapprox=946;RAW_GT_COUNT=0,0,1;RAW_MQandDP=102915,31;VarDP=30 GT:AD:DP:GQ:PL:SB 1/1:0,30,0:30:89:946,89,0,946,89,946:0,0,23,7 +chrX 2266523 . G . . END=2266587 GT:DP:GQ:MIN_DP:PL 0/0:47:28:42:0,28,962 +chrX 2266588 . A . . END=2266588 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,928 +chrX 2266589 . A . . END=2267519 GT:DP:GQ:MIN_DP:PL 0/0:56:54:56:0,54,1462 +chrX 2267520 . G A, 712.64 . AS_QUALapprox=|720|0;AS_VarDP=21|25|0;BaseQRankSum=0.799;DP=47;MQRankSum=-1.279;QUALapprox=720;RAW_GT_COUNT=0,1,0;RAW_MQandDP=166516,47;ReadPosRankSum=0.364;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:21,25,0:46:99:720,0,557,783,632,1415:11,10,17,8 +chrX 2267521 . G . . END=2267542 GT:DP:GQ:MIN_DP:PL 0/0:44:93:44:0,93,1259 +chrX 2267543 . C CA, 462.60 . AS_QUALapprox=|470|0;AS_VarDP=19|25|0;BaseQRankSum=0.344;DP=63;MQRankSum=0.000;QUALapprox=470;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=-0.308;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:19,25,0:44:99:470,0,359,528,433,961:12,7,14,11 +chrX 2267544 . A . . END=2267899 GT:DP:GQ:MIN_DP:PL 0/0:62:86:62:0,86,1702 +chrX 2267900 . T C, 627.64 . AS_QUALapprox=|635|0;AS_VarDP=29|24|0;BaseQRankSum=-0.274;DP=56;MQRankSum=0.000;QUALapprox=635;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=0.518;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:29,24,0:53:99:635,0,809,722,881,1603:16,13,10,14 +chrX 2267901 . T . . END=2268140 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 2268141 . T C, 537.64 . AS_QUALapprox=|545|0;AS_VarDP=34|21|0;BaseQRankSum=-0.035;DP=59;MQRankSum=0.000;QUALapprox=545;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=0.017;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:34,21,0:55:99:545,0,971,647,1035,1681:15,19,11,10 +chrX 2268142 . G . . END=2268389 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 2268390 . A G, 827.64 . AS_QUALapprox=|835|0;AS_VarDP=27|32|0;BaseQRankSum=-0.413;DP=60;MQRankSum=0.000;QUALapprox=835;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=0.746;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:27,32,0:59:99:835,0,711,916,806,1722:18,9,17,15 +chrX 2268391 . T . . END=2269117 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,111,1800 +chrX 2269118 . T C, 1059.64 . AS_QUALapprox=|1067|0;AS_VarDP=30|39|0;BaseQRankSum=-1.808;DP=71;MQRankSum=-0.848;QUALapprox=1067;RAW_GT_COUNT=0,1,0;RAW_MQandDP=255025,71;ReadPosRankSum=-0.926;VarDP=69 GT:AD:DP:GQ:PL:SB 0/1:30,39,0:69:99:1067,0,799,1157,915,2072:13,17,25,14 +chrX 2269119 . T . . END=2269425 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 2269426 . G A, 880.64 . AS_QUALapprox=|888|0;AS_VarDP=28|33|0;BaseQRankSum=-0.292;DP=62;MQRankSum=0.000;QUALapprox=888;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=-1.187;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:28,33,0:61:99:888,0,721,972,820,1791:13,15,16,17 +chrX 2269427 . C . . END=2269885 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 2269886 . G A, 2732.06 . AS_QUALapprox=|2746|0;AS_VarDP=0|63|0;DP=65;QUALapprox=2746;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=63 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,63,0:63:99:0|1:2269886_G_A:2746,189,0,2746,189,2746:2269886:0,0,33,30 +chrX 2269887 . T . . END=2269891 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 2269892 . G C, 2698.06 . AS_QUALapprox=|2712|0;AS_VarDP=0|62|0;DP=64;QUALapprox=2712;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=62 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,62,0:62:99:0|1:2269886_G_A:2712,186,0,2712,186,2712:2269886:0,0,33,29 +chrX 2269893 . T . . END=2270542 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 2270543 . A G, 2003.06 . AS_QUALapprox=|2017|0;AS_VarDP=0|54|0;DP=57;QUALapprox=2017;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,54,0:54:99:0|1:2270543_A_G:2017,162,0,2017,162,2017:2270543:0,0,28,26 +chrX 2270544 . G T, 944.64 . AS_QUALapprox=|952|0;AS_VarDP=29|25|0;BaseQRankSum=-0.721;DP=56;MQRankSum=0.000;QUALapprox=952;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-0.295;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,25,0:54:99:0|1:2270543_A_G:952,0,1111,1040,1187,2226:2270543:14,15,14,11 +chrX 2270545 . A T, 944.64 . AS_QUALapprox=|952|0;AS_VarDP=29|25|0;BaseQRankSum=-0.443;DP=55;MQRankSum=0.000;QUALapprox=952;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-0.599;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,25,0:54:99:0|1:2270543_A_G:952,0,1111,1040,1187,2226:2270543:14,15,14,11 +chrX 2270546 . A . . END=2270777 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,109,1771 +chrX 2270778 . C A, 1611.06 . AS_QUALapprox=|1625|0;AS_VarDP=0|51|0;DP=53;QUALapprox=1625;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1625,153,0,1625,153,1625:0,0,25,26 +chrX 2270779 . C . . END=2270855 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 2270856 . C G, 649.64 . AS_QUALapprox=|657|0;AS_VarDP=31|25|0;BaseQRankSum=1.724;DP=57;MQRankSum=0.000;QUALapprox=657;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=0.594;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:31,25,0:56:99:657,0,780,749,855,1604:20,11,16,9 +chrX 2270857 . A . . END=2270885 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 2270886 . A G, 1997.06 . AS_QUALapprox=|2011|0;AS_VarDP=0|53|0;DP=56;QUALapprox=2011;RAW_GT_COUNT=0,0,1;RAW_MQandDP=200304,56;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:2011,159,0,2011,159,2011:0,0,35,18 +chrX 2270887 . T . . END=2270972 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 2270973 . G GACCAATCAGCACTCTGTAAAATGC, 1106.60 . AS_QUALapprox=|1114|0;AS_VarDP=34|34|0;BaseQRankSum=1.411;DP=70;MQRankSum=-2.030;QUALapprox=1114;RAW_GT_COUNT=0,1,0;RAW_MQandDP=245589,70;ReadPosRankSum=-1.945;VarDP=68 GT:AD:DP:GQ:PL:SB 0/1:34,34,0:68:99:1114,0,1042,1217,1145,2361:18,16,15,19 +chrX 2270974 . A . . END=2271481 GT:DP:GQ:MIN_DP:PL 0/0:74:34:56:0,34,1429 +chrX 2271482 . C A, 693.64 . AS_QUALapprox=|701|0;AS_VarDP=21|25|0;BaseQRankSum=-1.598;DP=46;MQRankSum=0.000;QUALapprox=701;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=0.485;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:21,25,0:46:99:701,0,591,764,667,1430:8,13,15,10 +chrX 2271483 . C . . END=2271821 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,101,1465 +chrX 2271822 . A G, 1001.64 . AS_QUALapprox=|1009|0;AS_VarDP=28|37|0;BaseQRankSum=-0.009;DP=67;MQRankSum=0.000;QUALapprox=1009;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=-0.265;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:28,37,0:65:99:1009,0,718,1093,829,1922:16,12,19,18 +chrX 2271823 . G . . END=2272191 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,106,1776 +chrX 2272192 . C T, 1112.64 . AS_QUALapprox=|1120|0;AS_VarDP=26|41|0;BaseQRankSum=1.949;DP=70;MQRankSum=0.000;QUALapprox=1120;RAW_GT_COUNT=0,1,0;RAW_MQandDP=252000,70;ReadPosRankSum=0.116;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:26,41,0:67:99:1120,0,603,1198,725,1923:11,15,21,20 +chrX 2272193 . G . . END=2272393 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,120,1800 +chrX 2272394 . C G, 1901.06 . AS_QUALapprox=|1915|0;AS_VarDP=0|58|0;DP=61;QUALapprox=1915;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=58 GT:AD:DP:GQ:PL:SB 1/1:0,58,0:58:99:1915,174,0,1915,174,1915:0,0,19,39 +chrX 2272395 . T . . END=2272723 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,119,1663 +chrX 2272724 . A C, 1657.06 . AS_QUALapprox=|1671|0;AS_VarDP=0|49|0;DP=50;QUALapprox=1671;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1671,147,0,1671,147,1671:0,0,27,22 +chrX 2272725 . C . . END=2273206 GT:DP:GQ:MIN_DP:PL 0/0:49:79:49:0,79,1132 +chrX 2273207 . C A, 1574.06 . AS_QUALapprox=|1588|0;AS_VarDP=0|49|0;DP=50;QUALapprox=1588;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1588,147,0,1588,147,1588:0,0,30,19 +chrX 2273208 . A . . END=2273929 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,109,1378 +chrX 2273930 . A C, 2169.06 . AS_QUALapprox=|2183|0;AS_VarDP=0|68|0;DP=69;QUALapprox=2183;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=68 GT:AD:DP:GQ:PL:SB 1/1:0,68,0:68:99:2183,204,0,2183,204,2183:0,0,37,31 +chrX 2273931 . G . . END=2274146 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 2274147 . C T, 862.64 . AS_QUALapprox=|870|0;AS_VarDP=28|31|0;BaseQRankSum=-0.330;DP=62;MQRankSum=0.000;QUALapprox=870;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=-0.972;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:28,31,0:59:99:870,0,772,954,866,1820:14,14,13,18 +chrX 2274148 . C . . END=2274584 GT:DP:GQ:MIN_DP:PL 0/0:58:67:58:0,67,1227 +chrX 2274585 . C CT, 201.60 . AS_QUALapprox=|209|0;AS_VarDP=19|14|0;BaseQRankSum=1.086;DP=46;MQRankSum=-0.220;QUALapprox=209;RAW_GT_COUNT=0,1,0;RAW_MQandDP=163274,46;ReadPosRankSum=-1.313;VarDP=33 GT:AD:DP:GQ:PL:SB 0/1:19,14,0:33:99:209,0,306,264,348,612:12,7,6,8 +chrX 2274586 . T . . END=2274602 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 2274603 . G . . END=2274603 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,1007 +chrX 2274604 . T . . END=2274604 GT:DP:GQ:MIN_DP:PL 0/0:56:83:56:0,83,1495 +chrX 2274605 . A . . END=2274605 GT:DP:GQ:MIN_DP:PL 0/0:54:18:54:0,18,1157 +chrX 2274606 . T . . END=2275265 GT:DP:GQ:MIN_DP:PL 0/0:52:23:50:0,23,1173 +chrX 2275266 . G T, 740.64 . AS_QUALapprox=|748|0;AS_VarDP=23|27|0;BaseQRankSum=-0.640;DP=51;MQRankSum=0.000;QUALapprox=748;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=1.149;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:23,27,0:50:99:748,0,629,817,710,1528:13,10,17,10 +chrX 2275267 . G . . END=2275342 GT:DP:GQ:MIN_DP:PL 0/0:45:43:45:0,43,826 +chrX 2275343 . C CA,CAAAAAA, 947.02 . AS_QUALapprox=|369|702|0;AS_VarDP=0|12|16|0;DP=43;QUALapprox=964;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154336,43;VarDP=28 GT:AD:DP:GQ:PL:SB 1/2:0,12,16,0:28:99:964,650,595,262,0,411,953,648,378,1028:0,0,19,9 +chrX 2275344 . A . . END=2275513 GT:DP:GQ:MIN_DP:PL 0/0:50:64:50:0,64,1271 +chrX 2275514 . CA C, 1240.03 . AS_QUALapprox=|1254|0;AS_VarDP=0|46|0;DP=52;QUALapprox=1254;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1254,138,0,1254,138,1254:0,0,17,29 +chrX 2275516 . A . . END=2275804 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,104,1268 +chrX 2275805 . A G, 525.64 . AS_QUALapprox=|533|0;AS_VarDP=28|21|0;BaseQRankSum=0.448;DP=50;MQRankSum=0.000;QUALapprox=533;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=0.162;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:28,21,0:49:99:533,0,731,617,794,1411:11,17,8,13 +chrX 2275806 . A . . END=2275836 GT:DP:GQ:MIN_DP:PL 0/0:47:93:47:0,93,1360 +chrX 2275837 . A T, 1890.06 . AS_QUALapprox=|1904|0;AS_VarDP=0|43|0;DP=44;QUALapprox=1904;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158400,44;VarDP=43 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,43,0:43:99:0|1:2275837_A_T:1904,129,0,1904,129,1904:2275837:0,0,20,23 +chrX 2275838 . A T, 1890.06 . AS_QUALapprox=|1904|0;AS_VarDP=0|43|0;DP=43;QUALapprox=1904;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154800,43;VarDP=43 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,43,0:43:99:0|1:2275837_A_T:1904,129,0,1904,129,1904:2275837:0,0,20,23 +chrX 2275839 . A . . END=2276137 GT:DP:GQ:MIN_DP:PL 0/0:49:76:49:0,76,1121 +chrX 2276138 . G A, 991.64 . AS_QUALapprox=|999|0;AS_VarDP=21|36|0;BaseQRankSum=-1.193;DP=62;MQRankSum=-0.727;QUALapprox=999;RAW_GT_COUNT=0,1,0;RAW_MQandDP=221725,62;ReadPosRankSum=1.217;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:21,36,0:57:99:999,0,539,1063,647,1709:10,11,21,15 +chrX 2276139 . G . . END=2276347 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,115,1534 +chrX 2276348 . G A, 556.64 . AS_QUALapprox=|564|0;AS_VarDP=42|23|0;BaseQRankSum=0.808;DP=67;MQRankSum=0.000;QUALapprox=564;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=-1.784;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:42,23,0:65:99:564,0,1153,690,1222,1912:22,20,9,14 +chrX 2276349 . G . . END=2276418 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,117,1649 +chrX 2276419 . G A, 1060.64 . AS_QUALapprox=|1068|0;AS_VarDP=14|37|0;BaseQRankSum=-1.412;DP=53;MQRankSum=0.000;QUALapprox=1068;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=0.834;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:14,37,0:51:99:1068,0,333,1110,443,1554:6,8,17,20 +chrX 2276420 . A . . END=2276796 GT:DP:GQ:MIN_DP:PL 0/0:43:52:43:0,52,758 +chrX 2276797 . T . . END=2276797 GT:DP:GQ:MIN_DP:PL 0/0:26:0:26:0,0,506 +chrX 2276798 . A . . END=2276812 GT:DP:GQ:MIN_DP:PL 0/0:26:36:25:0,36,659 +chrX 2276813 . C . . END=2276813 GT:DP:GQ:MIN_DP:PL 0/0:22:17:22:0,17,586 +chrX 2276814 . A . . END=2276864 GT:DP:GQ:MIN_DP:PL 0/0:21:20:11:0,20,315 +chrX 2276865 . A . . END=2276865 GT:DP:GQ:MIN_DP:PL 0/0:9:2:9:0,2,243 +chrX 2276866 . G . . END=2276869 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,315 +chrX 2276870 . G . . END=2276983 GT:DP:GQ:MIN_DP:PL 0/0:2:0:2:0,0,0 +chrX 2276984 . A . . END=2276988 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,213 +chrX 2276989 . G . . END=2276989 GT:DP:GQ:MIN_DP:PL 0/0:6:0:6:0,0,98 +chrX 2276990 . A . . END=2276995 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,172 +chrX 2276996 . A . . END=2276996 GT:DP:GQ:MIN_DP:PL 0/0:9:13:9:0,13,234 +chrX 2276997 . G . . END=2277062 GT:DP:GQ:MIN_DP:PL 0/0:13:21:9:0,21,238 +chrX 2277063 . T . . END=2277063 GT:DP:GQ:MIN_DP:PL 0/0:29:17:29:0,17,737 +chrX 2277064 . A . . END=2277086 GT:DP:GQ:MIN_DP:PL 0/0:27:52:27:0,52,709 +chrX 2277087 . T . . END=2277087 GT:DP:GQ:MIN_DP:PL 0/0:22:2:22:0,2,486 +chrX 2277088 . G . . END=2277121 GT:DP:GQ:MIN_DP:PL 0/0:23:36:20:0,36,540 +chrX 2277122 . G . . END=2277123 GT:DP:GQ:MIN_DP:PL 0/0:19:0:19:0,0,396 +chrX 2277124 . G . . END=2277125 GT:DP:GQ:MIN_DP:PL 0/0:18:33:18:0,33,495 +chrX 2277126 . G . . END=2277127 GT:DP:GQ:MIN_DP:PL 0/0:18:0:18:0,0,408 +chrX 2277128 . G . . END=2277128 GT:DP:GQ:MIN_DP:PL 0/0:18:33:18:0,33,495 +chrX 2277129 . G . . END=2277129 GT:DP:GQ:MIN_DP:PL 0/0:16:13:16:0,13,467 +chrX 2277130 . G . . END=2277134 GT:DP:GQ:MIN_DP:PL 0/0:18:27:18:0,27,405 +chrX 2277135 . A . . END=2277139 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,238 +chrX 2277140 . G . . END=2277141 GT:DP:GQ:MIN_DP:PL 0/0:12:21:12:0,21,315 +chrX 2277142 . A . . END=2277142 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,203 +chrX 2277143 . G . . END=2277143 GT:DP:GQ:MIN_DP:PL 0/0:11:21:11:0,21,315 +chrX 2277144 . A . . END=2277426 GT:DP:GQ:MIN_DP:PL 0/0:1:0:1:0,0,0 +chrX 2277427 . A . . END=2277433 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,203 +chrX 2277434 . G . . END=2277436 GT:DP:GQ:MIN_DP:PL 0/0:7:0:7:0,0,154 +chrX 2277437 . A . . END=2277448 GT:DP:GQ:MIN_DP:PL 0/0:10:24:9:0,24,248 +chrX 2277449 . A . . END=2277449 GT:DP:GQ:MIN_DP:PL 0/0:11:19:11:0,19,263 +chrX 2277450 . G . . END=2277486 GT:DP:GQ:MIN_DP:PL 0/0:12:27:9:0,27,252 +chrX 2277487 . G . . END=2277487 GT:DP:GQ:MIN_DP:PL 0/0:13:0:13:0,0,233 +chrX 2277488 . A . . END=2277514 GT:DP:GQ:MIN_DP:PL 0/0:14:30:13:0,30,257 +chrX 2277515 . G . . END=2277516 GT:DP:GQ:MIN_DP:PL 0/0:14:4:14:0,4,322 +chrX 2277517 . A . . END=2277534 GT:DP:GQ:MIN_DP:PL 0/0:14:21:13:0,21,315 +chrX 2277535 . T . . END=2277536 GT:DP:GQ:MIN_DP:PL 0/0:11:8:11:0,8,273 +chrX 2277537 . G . . END=2277541 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,213 +chrX 2277542 . G . . END=2277542 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,189 +chrX 2277543 . G . . END=2277543 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,213 +chrX 2277544 . A . . END=2282267 GT:DP:GQ:MIN_DP:PL 0/0:0:0:0:0,0,0 +chrX 2282268 . A . . END=2282270 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,223 +chrX 2282271 . A . . END=2282276 GT:DP:GQ:MIN_DP:PL 0/0:7:0:7:0,0,84 +chrX 2282277 . A . . END=2282277 GT:DP:GQ:MIN_DP:PL 0/0:8:24:8:0,24,258 +chrX 2282278 . G . . END=2282283 GT:DP:GQ:MIN_DP:PL 0/0:9:0:9:0,0,119 +chrX 2282284 . G . . END=2282284 GT:DP:GQ:MIN_DP:PL 0/0:10:30:10:0,30,297 +chrX 2282285 . G . . END=2282288 GT:DP:GQ:MIN_DP:PL 0/0:12:0:12:0,0,258 +chrX 2282289 . A . . END=2282289 GT:DP:GQ:MIN_DP:PL 0/0:12:36:12:0,36,377 +chrX 2282290 . A . . END=2282290 GT:DP:GQ:MIN_DP:PL 0/0:12:0:12:0,0,228 +chrX 2282291 . A . . END=2282293 GT:DP:GQ:MIN_DP:PL 0/0:13:36:13:0,36,367 +chrX 2282294 . G . . END=2282294 GT:DP:GQ:MIN_DP:PL 0/0:13:4:13:0,4,362 +chrX 2282295 . A . . END=2282295 GT:DP:GQ:MIN_DP:PL 0/0:13:39:13:0,39,432 +chrX 2282296 . G . . END=2282296 GT:DP:GQ:MIN_DP:PL 0/0:15:0:15:0,0,213 +chrX 2282297 . A . . END=2282342 GT:DP:GQ:MIN_DP:PL 0/0:21:38:18:0,38,496 +chrX 2282343 . A . . END=2282343 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,0 +chrX 2282344 . A . . END=2282346 GT:DP:GQ:MIN_DP:PL 0/0:34:77:34:0,77,1032 +chrX 2282347 . A . . END=2282347 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,49 +chrX 2282348 . A . . END=2282380 GT:DP:GQ:MIN_DP:PL 0/0:36:45:36:0,45,720 +chrX 2282381 . A . . END=2282382 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,0 +chrX 2282383 . A . . END=2282449 GT:DP:GQ:MIN_DP:PL 0/0:39:48:39:0,48,1030 +chrX 2282450 . T . . END=2282450 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,871 +chrX 2282451 . G . . END=2282501 GT:DP:GQ:MIN_DP:PL 0/0:44:54:44:0,54,1159 +chrX 2282502 . TAGAG T, 468.04 . AS_QUALapprox=|581|0;AS_VarDP=27|16|0;BaseQRankSum=0.764;DP=48;MQRankSum=0.000;QUALapprox=581;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=0.188;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:27,16,0:43:99:581,0,1030,577,1038,1581:14,10,10,5 +chrX 2282507 . A . . END=2282538 GT:DP:GQ:MIN_DP:PL 0/0:49:72:49:0,72,1404 +chrX 2282539 . T . . END=2282539 GT:DP:GQ:MIN_DP:PL 0/0:47:18:47:0,18,1216 +chrX 2282540 . A . . END=2282560 GT:DP:GQ:MIN_DP:PL 0/0:45:40:45:0,40,1001 +chrX 2282561 . C . . END=2282561 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,948 +chrX 2282562 . G . . END=2282580 GT:DP:GQ:MIN_DP:PL 0/0:41:39:40:0,39,1136 +chrX 2282581 . A AGAGAGAGAAGAAAGAGGG, 211.60 . AS_QUALapprox=|219|0;AS_VarDP=8|7|0;BaseQRankSum=1.111;DP=32;MQRankSum=0.000;QUALapprox=219;RAW_GT_COUNT=0,1,0;RAW_MQandDP=115200,32;ReadPosRankSum=-0.506;VarDP=15 GT:AD:DP:GQ:PL:SB 0/1:8,7,0:15:99:219,0,288,245,308,554:6,2,7,0 +chrX 2282582 . G . . END=2282742 GT:DP:GQ:MIN_DP:PL 0/0:29:33:26:0,33,708 +chrX 2282743 . T . . END=2282743 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,607 +chrX 2282744 . G . . END=2282765 GT:DP:GQ:MIN_DP:PL 0/0:35:45:35:0,45,675 +chrX 2282766 . AAGCG A, 36.60 . AS_QUALapprox=|44|0;AS_VarDP=10|2|0;BaseQRankSum=0.875;DP=18;MQRankSum=0.000;QUALapprox=44;RAW_GT_COUNT=0,1,0;RAW_MQandDP=64800,18;ReadPosRankSum=-1.602;VarDP=12 GT:AD:DP:GQ:PL:SB 0/1:10,2,0:12:44:44,0,357,74,363,437:5,5,0,2 +chrX 2282771 . A . . END=2282811 GT:DP:GQ:MIN_DP:PL 0/0:10:21:9:0,21,313 +chrX 2282812 . AAGAG A, 271.61 . AS_QUALapprox=|279|0;AS_VarDP=1|7|0;BaseQRankSum=-0.157;DP=10;MQRankSum=0.000;QUALapprox=279;RAW_GT_COUNT=0,1,0;RAW_MQandDP=36000,10;ReadPosRankSum=1.534;VarDP=8 GT:AD:DP:GQ:PL:SB 0/1:1,7,0:8:21:279,0,21,282,42,324:1,0,4,3 +chrX 2282817 . A . . END=2282818 GT:DP:GQ:MIN_DP:PL 0/0:21:28:21:0,28,620 +chrX 2282819 . A . . END=2282819 GT:DP:GQ:MIN_DP:PL 0/0:21:0:21:0,0,501 +chrX 2282820 . G . . END=2282822 GT:DP:GQ:MIN_DP:PL 0/0:20:48:20:0,48,720 +chrX 2282823 . G . . END=2282823 GT:DP:GQ:MIN_DP:PL 0/0:20:0:20:0,0,526 +chrX 2282824 . G . . END=2282828 GT:DP:GQ:MIN_DP:PL 0/0:20:35:19:0,35,595 +chrX 2282829 . A . . END=2282829 GT:DP:GQ:MIN_DP:PL 0/0:20:0:20:0,0,515 +chrX 2282830 . G . . END=2282830 GT:DP:GQ:MIN_DP:PL 0/0:20:54:20:0,54,810 +chrX 2282831 . A . . END=2282831 GT:DP:GQ:MIN_DP:PL 0/0:21:14:21:0,14,551 +chrX 2282832 . G . . END=2282837 GT:DP:GQ:MIN_DP:PL 0/0:21:24:21:0,24,571 +chrX 2282838 . A . . END=2282838 GT:DP:GQ:MIN_DP:PL 0/0:21:0:21:0,0,461 +chrX 2282839 . A . . END=2283003 GT:DP:GQ:MIN_DP:PL 0/0:20:25:17:0,25,437 +chrX 2283004 . G A, 290.64 . AS_QUALapprox=|298|0;AS_VarDP=16|12|0;BaseQRankSum=0.423;DP=29;MQRankSum=0.000;QUALapprox=298;RAW_GT_COUNT=0,1,0;RAW_MQandDP=104400,29;ReadPosRankSum=1.510;VarDP=28 GT:AD:DP:GQ:PL:SB 0/1:16,12,0:28:99:298,0,431,346,466,813:11,5,9,3 +chrX 2283005 . G . . END=2283339 GT:DP:GQ:MIN_DP:PL 0/0:51:70:51:0,70,873 +chrX 2283340 . C G, 729.64 . AS_QUALapprox=|737|0;AS_VarDP=25|27|0;BaseQRankSum=0.464;DP=55;MQRankSum=0.000;QUALapprox=737;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-0.650;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:25,27,0:52:99:737,0,673,812,754,1566:9,16,15,12 +chrX 2283341 . T . . END=2283892 GT:DP:GQ:MIN_DP:PL 0/0:52:73:52:0,73,1072 +chrX 2283893 . C T, 626.64 . AS_QUALapprox=|634|0;AS_VarDP=26|23|0;BaseQRankSum=1.153;DP=51;MQRankSum=-1.022;QUALapprox=634;RAW_GT_COUNT=0,1,0;RAW_MQandDP=181089,51;ReadPosRankSum=-1.583;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,23,0:49:99:0|1:2283893_C_T:634,0,662,710,731,1442:2283893:15,11,17,6 +chrX 2283894 . G . . END=2283894 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,120,1800 +chrX 2283895 . TTCATTCCTTTGAATTCACTCATTCCTTTGAATTCAC T, 1505.03 . AS_QUALapprox=|1519|0;AS_VarDP=0|37|0;DP=53;QUALapprox=1519;RAW_GT_COUNT=0,0,1;RAW_MQandDP=188289,53;VarDP=37 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,37,0:37:99:0|1:2283893_C_T:1519,114,0,1519,114,1519:2283893:0,0,24,13 +chrX 2283932 . T . . END=2283966 GT:DP:GQ:MIN_DP:PL 0/0:45:82:45:0,82,1319 +chrX 2283967 . C . . END=2283967 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1017 +chrX 2283968 . T . . END=2284186 GT:DP:GQ:MIN_DP:PL 0/0:53:24:50:0,24,1384 +chrX 2284187 . TTTCAA T, 1062.60 . AS_QUALapprox=|1070|0;AS_VarDP=32|28|0;BaseQRankSum=2.003;DP=63;MQRankSum=0.000;QUALapprox=1070;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=-1.059;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:32,28,0:60:99:0|1:2284187_TTTCAA_T:1070,0,1228,1166,1313,2479:2284187:9,23,13,15 +chrX 2284193 . T . . END=2284195 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 2284196 . A C, 854.64 . AS_QUALapprox=|862|0;AS_VarDP=28|33|0;BaseQRankSum=-2.950;DP=61;MQRankSum=0.000;QUALapprox=862;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=0.521;VarDP=61 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:28,33,0:61:99:1|0:2284187_TTTCAA_T:862,0,1067,947,1166,2112:2284187:13,15,10,23 +chrX 2284197 . T . . END=2284364 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,106,1617 +chrX 2284365 . C CAA, 2764.03 . AS_QUALapprox=|2778|0;AS_VarDP=0|62|0;DP=65;QUALapprox=2778;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:0,62,0:62:99:2778,187,0,2778,187,2778:0,0,34,28 +chrX 2284366 . A . . END=2284403 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 2284404 . TTGAA T, 1896.03 . AS_QUALapprox=|1910|0;AS_VarDP=0|43|0;DP=60;QUALapprox=1910;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=43 GT:AD:DP:GQ:PL:SB 1/1:0,43,0:43:99:1910,130,0,1910,130,1910:0,0,19,24 +chrX 2284409 . T . . END=2284461 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 2284462 . A AC, 940.60 . AS_QUALapprox=|948|0;AS_VarDP=34|28|0;BaseQRankSum=-0.775;DP=65;MQRankSum=0.000;QUALapprox=948;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=-1.670;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:34,28,0:62:99:948,0,1189,1050,1273,2323:18,16,12,16 +chrX 2284463 . G . . END=2284745 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,107,1504 +chrX 2284746 . T G, 674.64 . AS_QUALapprox=|682|0;AS_VarDP=31|25|0;BaseQRankSum=-0.129;DP=58;MQRankSum=0.000;QUALapprox=682;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=1.031;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:31,25,0:56:99:682,0,860,774,935,1709:16,15,15,10 +chrX 2284747 . A . . END=2286691 GT:DP:GQ:MIN_DP:PL 0/0:58:79:58:0,79,1344 +chrX 2286692 . G GA, 977.03 . AS_QUALapprox=|991|0;AS_VarDP=0|39|0;DP=48;QUALapprox=991;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=39 GT:AD:DP:GQ:PL:SB 1/1:0,39,0:39:99:991,115,0,992,115,992:0,0,18,21 +chrX 2286693 . A . . END=2287473 GT:DP:GQ:MIN_DP:PL 0/0:55:32:55:0,32,1441 +chrX 2287474 . T . . END=2287474 GT:DP:GQ:MIN_DP:PL 0/0:54:10:54:0,10,1411 +chrX 2287475 . A . . END=2287552 GT:DP:GQ:MIN_DP:PL 0/0:63:39:59:0,39,1392 +chrX 2287553 . T . . END=2287553 GT:DP:GQ:MIN_DP:PL 0/0:56:0:56:0,0,1239 +chrX 2287554 . A . . END=2287557 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 2287558 . G . . END=2287558 GT:DP:GQ:MIN_DP:PL 0/0:57:8:57:0,8,1293 +chrX 2287559 . A . . END=2288125 GT:DP:GQ:MIN_DP:PL 0/0:59:81:59:0,81,1410 +chrX 2288126 . TA T, 1461.03 . AS_QUALapprox=|1475|0;AS_VarDP=0|49|0;DP=55;QUALapprox=1475;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1475,147,0,1475,147,1475:0,0,25,24 +chrX 2288128 . A . . END=2288433 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,110,1404 +chrX 2288434 . A G, 1653.06 . AS_QUALapprox=|1667|0;AS_VarDP=1|53|0;BaseQRankSum=2.135;DP=56;MQRankSum=0.000;QUALapprox=1667;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;ReadPosRankSum=0.514;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:1,53,0:54:99:1667,152,0,1670,159,1677:0,1,29,24 +chrX 2288435 . A . . END=2289890 GT:DP:GQ:MIN_DP:PL 0/0:57:77:57:0,77,1087 +chrX 2289891 . C T, 602.64 . AS_QUALapprox=|610|0;AS_VarDP=26|22|0;BaseQRankSum=1.810;DP=49;MQRankSum=0.000;QUALapprox=610;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=-0.176;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:26,22,0:48:99:610,0,699,689,765,1454:11,15,12,10 +chrX 2289892 . A . . END=2290428 GT:DP:GQ:MIN_DP:PL 0/0:55:93:55:0,93,1394 +chrX 2290429 . T C, 626.64 . AS_QUALapprox=|634|0;AS_VarDP=35|26|0;BaseQRankSum=-0.964;DP=62;MQRankSum=0.000;QUALapprox=634;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=-0.518;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:35,26,0:61:99:634,0,974,740,1051,1791:18,17,15,11 +chrX 2290430 . G . . END=2290588 GT:DP:GQ:MIN_DP:PL 0/0:53:67:53:0,67,1395 +chrX 2290589 . A G, 785.64 . AS_QUALapprox=|793|0;AS_VarDP=26|31|0;BaseQRankSum=0.383;DP=58;MQRankSum=0.000;QUALapprox=793;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=0.673;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:26,31,0:57:99:793,0,617,870,709,1579:14,12,17,14 +chrX 2290590 . A . . END=2290642 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 2290643 . A G, 616.64 . AS_QUALapprox=|624|0;AS_VarDP=36|24|0;BaseQRankSum=1.435;DP=64;MQRankSum=0.000;QUALapprox=624;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=-0.559;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:36,24,0:60:99:624,0,956,732,1028,1760:18,18,13,11 +chrX 2290644 . C . . END=2291047 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 2291048 . G A, 718.64 . AS_QUALapprox=|726|0;AS_VarDP=31|28|0;BaseQRankSum=-1.170;DP=59;MQRankSum=0.000;QUALapprox=726;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-1.465;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:31,28,0:59:99:726,0,860,819,944,1763:18,13,8,20 +chrX 2291049 . G . . END=2291096 GT:DP:GQ:MIN_DP:PL 0/0:50:76:50:0,76,1365 +chrX 2291097 . G A, 585.64 . AS_QUALapprox=|593|0;AS_VarDP=24|23|0;BaseQRankSum=-0.865;DP=49;MQRankSum=0.000;QUALapprox=593;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=-1.235;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:24,23,0:47:99:593,0,663,665,732,1398:12,12,6,17 +chrX 2291098 . A . . END=2291142 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,99,1485 +chrX 2291143 . C T, 503.64 . AS_QUALapprox=|511|0;AS_VarDP=21|20|0;BaseQRankSum=-0.321;DP=42;MQRankSum=0.000;QUALapprox=511;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151200,42;ReadPosRankSum=-1.487;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:21,20,0:41:99:511,0,540,573,600,1173:12,9,9,11 +chrX 2291144 . T . . END=2291286 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,99,1206 +chrX 2291287 . T C, 478.64 . AS_QUALapprox=|486|0;AS_VarDP=43|20|0;BaseQRankSum=2.064;DP=69;MQRankSum=0.000;QUALapprox=486;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=-0.798;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:43,20,0:63:99:486,0,1155,615,1215,1830:20,23,13,7 +chrX 2291288 . A . . END=2291630 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 2291631 . C G, 655.64 . AS_QUALapprox=|663|0;AS_VarDP=41|29|0;BaseQRankSum=0.468;DP=71;MQRankSum=0.000;QUALapprox=663;RAW_GT_COUNT=0,1,0;RAW_MQandDP=255600,71;ReadPosRankSum=-0.207;VarDP=70 GT:AD:DP:GQ:PL:SB 0/1:41,29,0:70:99:663,0,1584,786,1669,2456:16,25,11,18 +chrX 2291632 . T . . END=2291633 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 2291634 . G C, 1019.64 . AS_QUALapprox=|1027|0;AS_VarDP=30|41|0;BaseQRankSum=-1.439;DP=73;MQRankSum=0.000;QUALapprox=1027;RAW_GT_COUNT=0,1,0;RAW_MQandDP=262800,73;ReadPosRankSum=-0.073;VarDP=71 GT:AD:DP:GQ:PL:SB 0/1:30,41,0:71:99:1027,0,1084,1117,1207,2324:12,18,16,25 +chrX 2291635 . T . . END=2291707 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 2291708 . AC A, 562.60 . AS_QUALapprox=|570|0;AS_VarDP=27|23|0;BaseQRankSum=-0.138;DP=52;MQRankSum=0.000;QUALapprox=570;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=0.594;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,23,0:50:99:0|1:2291708_AC_A:570,0,769,651,837,1488:2291708:11,16,11,12 +chrX 2291709 . CT C,*, 612.01 . AS_QUALapprox=|950|0|0;AS_VarDP=0|23|23|0;DP=52;QUALapprox=1520;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=46 GT:AD:DP:GQ:PL:SB 1/2:0,23,23,0:46:99:1520,701,570,622,0,769,1454,697,741,1504:0,0,22,24 +chrX 2291710 . T *,G, 573.01 . AS_QUALapprox=|0|898|0;AS_VarDP=0|23|23|0;DP=52;QUALapprox=1520;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|2:0,23,23,0:46:99:0|1:2291708_AC_A:1520,701,570,622,0,769,1454,697,741,1504:2291708:0,0,22,24 +chrX 2291711 . T . . END=2291895 GT:DP:GQ:MIN_DP:PL 0/0:55:72:55:0,72,1063 +chrX 2291896 . A ATTT, 439.60 . AS_QUALapprox=|447|0;AS_VarDP=12|14|0;BaseQRankSum=0.311;DP=42;MQRankSum=-1.925;QUALapprox=447;RAW_GT_COUNT=0,1,0;RAW_MQandDP=142109,42;ReadPosRankSum=-0.180;VarDP=26 GT:AD:DP:GQ:PL:SB 0/1:12,14,0:26:99:447,0,349,482,391,873:5,7,7,7 +chrX 2291897 . T . . END=2291919 GT:DP:GQ:MIN_DP:PL 0/0:45:72:45:0,72,1080 +chrX 2291920 . A . . END=2291921 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,788 +chrX 2291922 . T . . END=2292029 GT:DP:GQ:MIN_DP:PL 0/0:51:59:51:0,59,1285 +chrX 2292030 . A G, 610.64 . AS_QUALapprox=|618|0;AS_VarDP=27|25|0;BaseQRankSum=-1.727;DP=58;MQRankSum=-1.001;QUALapprox=618;RAW_GT_COUNT=0,1,0;RAW_MQandDP=207801,58;ReadPosRankSum=0.678;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:27,25,0:52:99:618,0,738,698,813,1511:13,14,12,13 +chrX 2292031 . C . . END=2292381 GT:DP:GQ:MIN_DP:PL 0/0:56:96:56:0,96,1548 +chrX 2292382 . G C, 1852.06 . AS_QUALapprox=|1866|0;AS_VarDP=0|55|0;DP=59;QUALapprox=1866;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1866,165,0,1866,165,1866:0,0,37,18 +chrX 2292383 . T . . END=2293146 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,102,1519 +chrX 2293147 . G C, 528.64 . AS_QUALapprox=|536|0;AS_VarDP=33|25|0;BaseQRankSum=-2.627;DP=60;MQRankSum=0.000;QUALapprox=536;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=-0.793;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:33,25,0:58:99:536,0,876,634,950,1584:14,19,16,9 +chrX 2293148 . G . . END=2293184 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 2293185 . A G, 1773.06 . AS_QUALapprox=|1787|0;AS_VarDP=0|54|0;DP=56;QUALapprox=1787;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:1787,162,0,1787,162,1787:0,0,28,26 +chrX 2293186 . C . . END=2293252 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,115,1460 +chrX 2293253 . GT G,GTT, 1200.02 . AS_QUALapprox=|538|624|0;AS_VarDP=0|25|19|0;DP=57;QUALapprox=1217;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=44 GT:AD:DP:GQ:PL:SB 1/2:0,25,19,0:44:99:1217,706,679,593,0,936,1288,733,819,1482:0,0,25,19 +chrX 2293255 . T . . END=2293269 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,117,1755 +chrX 2293270 . C T, 648.64 . AS_QUALapprox=|656|0;AS_VarDP=32|21|0;BaseQRankSum=0.864;DP=56;MQRankSum=0.000;QUALapprox=656;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=0.873;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:32,21,0:53:99:656,0,1111,752,1174,1926:18,14,8,13 +chrX 2293271 . C . . END=2293889 GT:DP:GQ:MIN_DP:PL 0/0:50:90:50:0,90,1210 +chrX 2293890 . G A, 523.64 . AS_QUALapprox=|531|0;AS_VarDP=29|21|0;BaseQRankSum=1.397;DP=51;MQRankSum=0.000;QUALapprox=531;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=1.760;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:29,21,0:50:99:531,0,764,617,826,1443:16,13,11,10 +chrX 2293891 . A . . END=2294057 GT:DP:GQ:MIN_DP:PL 0/0:56:59:56:0,59,1393 +chrX 2294058 . C CAG, 1352.03 . AS_QUALapprox=|1366|0;AS_VarDP=0|36|0;DP=50;QUALapprox=1366;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=36 GT:AD:DP:GQ:PL:SB 1/1:0,36,0:36:99:1366,108,0,1366,108,1367:0,0,14,22 +chrX 2294059 . A . . END=2294663 GT:DP:GQ:MIN_DP:PL 0/0:59:80:59:0,80,1314 +chrX 2294664 . C CA,CAA, 1363.02 . AS_QUALapprox=|836|1078|0;AS_VarDP=0|17|29|0;DP=57;QUALapprox=1380;RAW_GT_COUNT=0,0,1;RAW_MQandDP=202516,57;VarDP=46 GT:AD:DP:GQ:PL:SB 1/2:0,17,29,0:46:99:1380,681,544,404,0,302,1246,658,401,1181:0,0,28,18 +chrX 2294665 . A . . END=2294807 GT:DP:GQ:MIN_DP:PL 0/0:58:50:58:0,50,1287 +chrX 2294808 . G GA, 750.60 . AS_QUALapprox=|758|0;AS_VarDP=24|29|0;BaseQRankSum=-1.025;DP=59;MQRankSum=0.000;QUALapprox=758;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-0.286;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:24,29,0:53:99:758,0,608,830,695,1525:10,14,15,14 +chrX 2294809 . A . . END=2294884 GT:DP:GQ:MIN_DP:PL 0/0:59:84:59:0,84,1559 +chrX 2294885 . T C, 1680.06 . AS_QUALapprox=|1694|0;AS_VarDP=0|52|0;DP=55;QUALapprox=1694;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1694,155,0,1694,155,1694:0,0,23,29 +chrX 2294886 . G . . END=2295040 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 2295041 . G A, 2367.06 . AS_QUALapprox=|2381|0;AS_VarDP=0|74|0;DP=76;QUALapprox=2381;RAW_GT_COUNT=0,0,1;RAW_MQandDP=271369,76;VarDP=74 GT:AD:DP:GQ:PL:SB 1/1:0,74,0:74:99:2381,222,0,2381,222,2381:0,0,37,37 +chrX 2295042 . A . . END=2295244 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 2295245 . TA T, 2165.03 . AS_QUALapprox=|2179|0;AS_VarDP=0|70|0;DP=77;QUALapprox=2179;RAW_GT_COUNT=0,0,1;RAW_MQandDP=196523,77;VarDP=70 GT:AD:DP:GQ:PL:SB 1/1:0,70,0:70:99:2179,211,0,2179,211,2179:0,0,38,32 +chrX 2295247 . A . . END=2295422 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,120,1800 +chrX 2295423 . T TG, 600.60 . AS_QUALapprox=|608|0;AS_VarDP=39|26|0;BaseQRankSum=0.108;DP=72;MQRankSum=0.126;QUALapprox=608;RAW_GT_COUNT=0,1,0;RAW_MQandDP=197345,72;ReadPosRankSum=-1.480;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:39,26,0:65:99:608,0,1019,725,1097,1822:19,20,10,16 +chrX 2295424 . G . . END=2296578 GT:DP:GQ:MIN_DP:PL 0/0:28:20:23:0,20,624 +chrX 2296579 . T . . END=2296579 GT:DP:GQ:MIN_DP:PL 0/0:22:0:22:0,0,538 +chrX 2296580 . A . . END=2296613 GT:DP:GQ:MIN_DP:PL 0/0:18:21:9:0,21,268 +chrX 2296614 . A . . END=2296615 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,0 +chrX 2296616 . A . . END=2296616 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,315 +chrX 2296617 . G . . END=2296885 GT:DP:GQ:MIN_DP:PL 0/0:2:0:2:0,0,0 +chrX 2296886 . A . . END=2296891 GT:DP:GQ:MIN_DP:PL 0/0:9:24:9:0,24,258 +chrX 2296892 . A . . END=2296892 GT:DP:GQ:MIN_DP:PL 0/0:9:0:9:0,0,223 +chrX 2296893 . G . . END=2296955 GT:DP:GQ:MIN_DP:PL 0/0:11:27:9:0,27,303 +chrX 2296956 . A G, 329.64 . AS_QUALapprox=|337|0;AS_VarDP=12|16|0;BaseQRankSum=-2.574;DP=28;MQRankSum=0.809;QUALapprox=337;RAW_GT_COUNT=0,1,0;RAW_MQandDP=76329,28;ReadPosRankSum=-0.279;VarDP=28 GT:AD:DP:GQ:PL:SB 0/1:12,16,0:28:99:337,0,321,373,368,741:8,4,11,5 +chrX 2296957 . G . . END=2296969 GT:DP:GQ:MIN_DP:PL 0/0:35:81:35:0,81,997 +chrX 2296970 . C . . END=2296970 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,858 +chrX 2296971 . A . . END=2297729 GT:DP:GQ:MIN_DP:PL 0/0:56:83:56:0,83,1051 +chrX 2297730 . A C, 1697.06 . AS_QUALapprox=|1711|0;AS_VarDP=0|56|0;DP=60;QUALapprox=1711;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1711,167,0,1711,167,1711:0,0,26,30 +chrX 2297731 . G . . END=2297761 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,117,1755 +chrX 2297762 . G GT,GTTTT, 1285.02 . AS_QUALapprox=|544|814|0;AS_VarDP=0|19|20|0;DP=52;QUALapprox=1302;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=39 GT:AD:DP:GQ:PL:SB 1/2:0,19,20,0:39:99:1302,829,758,488,0,703,1329,825,646,1441:0,0,17,22 +chrX 2297763 . T . . END=2297774 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 2297775 . G . . END=2297778 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1225 +chrX 2297779 . A . . END=2297999 GT:DP:GQ:MIN_DP:PL 0/0:53:71:53:0,71,1459 +chrX 2298000 . C A, 807.64 . AS_QUALapprox=|815|0;AS_VarDP=21|30|0;BaseQRankSum=-1.016;DP=53;MQRankSum=0.000;QUALapprox=815;RAW_GT_COUNT=0,1,0;RAW_MQandDP=188800,53;ReadPosRankSum=-0.335;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:21,30,0:51:99:815,0,557,878,647,1525:14,7,15,15 +chrX 2298001 . C . . END=2298014 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 2298015 . C G, 772.64 . AS_QUALapprox=|780|0;AS_VarDP=21|30|0;BaseQRankSum=-1.110;DP=52;MQRankSum=0.000;QUALapprox=780;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=-0.316;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:21,30,0:51:99:780,0,544,843,633,1476:12,9,15,15 +chrX 2298016 . A . . END=2298067 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 2298068 . A G, 640.64 . AS_QUALapprox=|648|0;AS_VarDP=29|26|0;BaseQRankSum=-0.737;DP=55;MQRankSum=0.000;QUALapprox=648;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-0.911;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:29,26,0:55:99:648,0,757,735,835,1570:16,13,16,10 +chrX 2298069 . A . . END=2298183 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,112,1503 +chrX 2298184 . T C, 1592.06 . AS_QUALapprox=|1606|0;AS_VarDP=0|50|0;DP=54;QUALapprox=1606;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1606,149,0,1606,149,1606:0,0,30,20 +chrX 2298185 . G . . END=2298313 GT:DP:GQ:MIN_DP:PL 0/0:50:41:50:0,41,1487 +chrX 2298314 . G . . END=2298315 GT:DP:GQ:MIN_DP:PL 0/0:60:0:60:0,0,1500 +chrX 2298316 . T . . END=2298316 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 2298317 . G GTTT, 906.60 . AS_QUALapprox=|914|0;AS_VarDP=13|26|0;BaseQRankSum=-0.451;DP=49;MQRankSum=0.000;QUALapprox=914;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=-0.864;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:13,26,0:39:99:914,0,413,953,491,1444:5,8,10,16 +chrX 2298318 . T . . END=2298331 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,102,1530 +chrX 2298332 . G T, 19.64 . AS_QUALapprox=|27|0;AS_VarDP=34|5|0;BaseQRankSum=-1.339;DP=44;MQRankSum=0.000;QUALapprox=27;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=1.253;VarDP=39 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:34,5,0:39:27:0|1:2298332_G_T:27,0,1274,129,1289,1418:2298332:9,25,5,0 +chrX 2298333 . T . . END=2298334 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,102,1530 +chrX 2298335 . A T, 1.22 . AS_QUALapprox=|8|0;AS_VarDP=34|4|0;BaseQRankSum=-2.705;DP=38;MQRankSum=0.000;QUALapprox=8;RAW_GT_COUNT=0,1,0;RAW_MQandDP=136800,38;ReadPosRankSum=0.529;VarDP=38 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:34,4,0:38:8:0|1:2298332_G_T:8,0,1277,111,1289,1399:2298332:9,25,4,0 +chrX 2298336 . G . . END=2298393 GT:DP:GQ:MIN_DP:PL 0/0:42:45:37:0,45,968 +chrX 2298394 . T TA, 930.03 . AS_QUALapprox=|944|0;AS_VarDP=0|39|0;DP=47;QUALapprox=944;RAW_GT_COUNT=0,0,1;RAW_MQandDP=168068,47;VarDP=39 GT:AD:DP:GQ:PL:SB 1/1:0,39,0:39:99:944,116,0,944,116,944:0,0,21,18 +chrX 2298395 . A . . END=2298455 GT:DP:GQ:MIN_DP:PL 0/0:37:85:37:0,85,988 +chrX 2298456 . C T, 1431.06 . AS_QUALapprox=|1445|0;AS_VarDP=0|43|0;DP=44;QUALapprox=1445;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158400,44;VarDP=43 GT:AD:DP:GQ:PL:SB 1/1:0,43,0:43:99:1445,129,0,1445,129,1445:0,0,28,15 +chrX 2298457 . A . . END=2298524 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,119,1498 +chrX 2298525 . A G, 641.64 . AS_QUALapprox=|649|0;AS_VarDP=21|24|0;BaseQRankSum=-1.015;DP=46;MQRankSum=0.000;QUALapprox=649;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=-0.797;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:21,24,0:45:99:649,0,575,712,647,1359:13,8,17,7 +chrX 2298526 . C . . END=2298600 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,109,1339 +chrX 2298601 . TACACACACACAC T,CACACACACACAC, 2179.06 . AS_QUALapprox=|993|1229|0;AS_VarDP=0|23|33|0;DP=63;QUALapprox=2196;RAW_GT_COUNT=0,0,1;RAW_MQandDP=224800,63;VarDP=56 GT:AD:DP:GQ:PL:SB 1/2:0,23,33,0:56:99:2196,1237,1203,967,0,1024,2217,1272,1052,2304:0,0,29,27 +chrX 2298614 . A ACACACACACACG, 1013.60 . AS_QUALapprox=|1021|0;AS_VarDP=25|28|0;BaseQRankSum=0.860;DP=55;MQRankSum=-0.907;QUALapprox=1021;RAW_GT_COUNT=0,1,0;RAW_MQandDP=196000,55;ReadPosRankSum=-1.622;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:25,28,0:53:99:1021,0,943,1097,1027,2124:14,11,13,15 +chrX 2298615 . C . . END=2298625 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 2298626 . A . . END=2298626 GT:DP:GQ:MIN_DP:PL 0/0:64:0:64:0,0,1569 +chrX 2298627 . C . . END=2298637 GT:DP:GQ:MIN_DP:PL 0/0:64:79:64:0,79,1800 +chrX 2298638 . G . . END=2298639 GT:DP:GQ:MIN_DP:PL 0/0:61:10:61:0,10,1654 +chrX 2298640 . G . . END=2298730 GT:DP:GQ:MIN_DP:PL 0/0:66:22:62:0,22,1727 +chrX 2298731 . T A, 859.64 . AS_QUALapprox=|867|0;AS_VarDP=38|33|0;BaseQRankSum=0.354;DP=72;MQRankSum=0.960;QUALapprox=867;RAW_GT_COUNT=0,1,0;RAW_MQandDP=258625,72;ReadPosRankSum=1.539;VarDP=71 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:38,33,0:71:99:0|1:2298731_T_A:867,0,1023,981,1122,2103:2298731:22,16,14,19 +chrX 2298732 . T . . END=2298755 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 2298756 . C T, 2391.06 . AS_QUALapprox=|2405|0;AS_VarDP=0|64|0;DP=67;QUALapprox=2405;RAW_GT_COUNT=0,0,1;RAW_MQandDP=240625,67;VarDP=64 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,64,0:64:99:0|1:2298731_T_A:2405,192,0,2405,192,2405:2298731:0,0,31,33 +chrX 2298757 . G . . END=2298983 GT:DP:GQ:MIN_DP:PL 0/0:63:77:63:0,77,1364 +chrX 2298984 . T . . END=2298984 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1144 +chrX 2298985 . CAAAAAAAAAA C, 669.60 . AS_QUALapprox=|677|0;AS_VarDP=20|18|0;BaseQRankSum=0.200;DP=60;MQRankSum=0.934;QUALapprox=677;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205312,60;ReadPosRankSum=1.843;VarDP=38 GT:AD:DP:GQ:PL:SB 0/1:20,18,0:38:99:677,0,784,738,840,1577:11,9,9,9 +chrX 2298996 . A . . END=2299013 GT:DP:GQ:MIN_DP:PL 0/0:46:63:46:0,63,1320 +chrX 2299014 . A T,AAT, 1758.06 . AS_QUALapprox=|1064|1098|0;AS_VarDP=0|18|20|0;DP=55;QUALapprox=1775;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187312,55;VarDP=38 GT:AD:DP:GQ:PL:SB 1/2:0,18,20,0:38:99:1775,711,784,778,0,677,1642,801,775,1676:0,0,20,18 +chrX 2299015 . T . . END=2299198 GT:DP:GQ:MIN_DP:PL 0/0:72:72:72:0,72,1404 +chrX 2299199 . A C, 2069.06 . AS_QUALapprox=|2083|0;AS_VarDP=0|65|0;DP=69;QUALapprox=2083;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=65 GT:AD:DP:GQ:PL:SB 1/1:0,65,0:65:99:2083,194,0,2083,194,2083:0,0,35,30 +chrX 2299200 . T . . END=2299279 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 2299280 . T C, 1164.64 . AS_QUALapprox=|1172|0;AS_VarDP=17|41|0;BaseQRankSum=0.050;DP=61;MQRankSum=0.000;QUALapprox=1172;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-1.846;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:17,41,0:58:99:1172,0,357,1222,480,1702:8,9,24,17 +chrX 2299281 . G . . END=2299348 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 2299349 . A G, 1876.06 . AS_QUALapprox=|1890|0;AS_VarDP=0|58|0;DP=60;QUALapprox=1890;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=58 GT:AD:DP:GQ:PL:SB 1/1:0,58,0:58:99:1890,174,0,1890,174,1890:0,0,22,36 +chrX 2299350 . G . . END=2299853 GT:DP:GQ:MIN_DP:PL 0/0:59:69:59:0,69,1258 +chrX 2299854 . CAA C, 551.60 . AS_QUALapprox=|559|0;AS_VarDP=27|19|0;BaseQRankSum=1.454;DP=54;MQRankSum=-1.148;QUALapprox=559;RAW_GT_COUNT=0,1,0;RAW_MQandDP=192400,54;ReadPosRankSum=0.379;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:27,19,0:46:99:559,0,843,640,900,1540:11,16,12,7 +chrX 2299857 . A . . END=2299953 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,104,1604 +chrX 2299954 . G A, 658.64 . AS_QUALapprox=|666|0;AS_VarDP=26|25|0;BaseQRankSum=0.014;DP=52;MQRankSum=0.000;QUALapprox=666;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=-0.886;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:26,25,0:51:99:666,0,686,744,761,1505:15,11,9,16 +chrX 2299955 . C . . END=2300225 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,102,1444 +chrX 2300226 . G A, 836.64 . AS_QUALapprox=|844|0;AS_VarDP=37|31|0;BaseQRankSum=1.627;DP=71;MQRankSum=0.000;QUALapprox=844;RAW_GT_COUNT=0,1,0;RAW_MQandDP=255600,71;ReadPosRankSum=0.486;VarDP=68 GT:AD:DP:GQ:PL:SB 0/1:37,31,0:68:99:844,0,962,954,1055,2009:22,15,20,11 +chrX 2300227 . T . . END=2302094 GT:DP:GQ:MIN_DP:PL 0/0:62:62:62:0,62,1001 +chrX 2302095 . T C, 600.64 . AS_QUALapprox=|608|0;AS_VarDP=30|22|0;BaseQRankSum=1.785;DP=54;MQRankSum=0.000;QUALapprox=608;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=0.510;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:30,22,0:52:99:608,0,845,699,911,1610:18,12,13,9 +chrX 2302096 . A . . END=2302310 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,106,1692 +chrX 2302311 . T TA, 714.60 . AS_QUALapprox=|722|0;AS_VarDP=33|24|0;BaseQRankSum=0.257;DP=59;MQRankSum=0.000;QUALapprox=722;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=0.897;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:33,24,0:57:99:722,0,1057,821,1129,1950:17,16,15,9 +chrX 2302312 . A . . END=2302437 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 2302438 . T C, 824.64 . AS_QUALapprox=|832|0;AS_VarDP=34|31|0;BaseQRankSum=-0.494;DP=65;MQRankSum=0.000;QUALapprox=832;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=0.795;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:34,31,0:65:99:832,0,945,934,1039,1973:20,14,16,15 +chrX 2302439 . G . . END=2302603 GT:DP:GQ:MIN_DP:PL 0/0:65:47:65:0,47,1637 +chrX 2302604 . T . . END=2302607 GT:DP:GQ:MIN_DP:PL 0/0:65:0:65:0,0,1568 +chrX 2302608 . T . . END=2302608 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 2302609 . C . . END=2302609 GT:DP:GQ:MIN_DP:PL 0/0:64:0:64:0,0,1697 +chrX 2302610 . A . . END=2302611 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 2302612 . A AAAATAAAT, 868.60 . AS_QUALapprox=|876|0;AS_VarDP=27|23|0;BaseQRankSum=-1.112;DP=69;MQRankSum=0.000;QUALapprox=876;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=-2.191;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:27,23,0:50:99:876,0,1050,959,1119,2078:10,17,8,15 +chrX 2302613 . A . . END=2302635 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 2302636 . G . . END=2302637 GT:DP:GQ:MIN_DP:PL 0/0:61:9:61:0,9,1662 +chrX 2302638 . A . . END=2303413 GT:DP:GQ:MIN_DP:PL 0/0:56:26:55:0,26,1523 +chrX 2303414 . A G, 348.64 . AS_QUALapprox=|356|0;AS_VarDP=39|16|0;BaseQRankSum=0.404;DP=58;MQRankSum=0.000;QUALapprox=356;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=1.010;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:39,16,0:55:99:356,0,1120,473,1168,1641:22,17,8,8 +chrX 2303415 . C . . END=2303523 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 2303524 . G T, 453.64 . AS_QUALapprox=|461|0;AS_VarDP=30|18|0;BaseQRankSum=-0.511;DP=54;MQRankSum=0.000;QUALapprox=461;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=1.747;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:30,18,0:48:99:461,0,879,552,933,1484:10,20,8,10 +chrX 2303525 . C . . END=2303618 GT:DP:GQ:MIN_DP:PL 0/0:46:92:46:0,92,1430 +chrX 2303619 . A G, 662.64 . AS_QUALapprox=|670|0;AS_VarDP=24|24|0;BaseQRankSum=0.487;DP=55;MQRankSum=0.000;QUALapprox=670;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=0.258;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:24,24,0:48:99:670,0,660,742,732,1474:10,14,13,11 +chrX 2303620 . T . . END=2303784 GT:DP:GQ:MIN_DP:PL 0/0:62:51:62:0,51,765 +chrX 2303785 . A ATGGATGGG, 219.60 . AS_QUALapprox=|227|0;AS_VarDP=15|9|0;BaseQRankSum=1.915;DP=39;MQRankSum=-0.934;QUALapprox=227;RAW_GT_COUNT=0,1,0;RAW_MQandDP=121124,39;ReadPosRankSum=-2.489;VarDP=24 GT:AD:DP:GQ:PL:SB 0/1:15,9,0:24:99:227,0,414,271,440,711:9,6,6,3 +chrX 2303786 . T . . END=2303788 GT:DP:GQ:MIN_DP:PL 0/0:29:60:29:0,60,900 +chrX 2303789 . ATGGG A, 426.60 . AS_QUALapprox=|434|0;AS_VarDP=11|14|0;BaseQRankSum=-1.281;DP=41;MQRankSum=0.129;QUALapprox=434;RAW_GT_COUNT=0,1,0;RAW_MQandDP=118718,41;ReadPosRankSum=2.737;VarDP=25 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:11,14,0:25:99:0|1:2303789_ATGGG_A:434,0,270,466,312,777:2303789:8,3,7,7 +chrX 2303794 . T . . END=2303800 GT:DP:GQ:MIN_DP:PL 0/0:26:53:26:0,53,723 +chrX 2303801 . G A, 436.64 . AS_QUALapprox=|444|0;AS_VarDP=10|15|0;BaseQRankSum=-1.792;DP=41;MQRankSum=0.304;QUALapprox=444;RAW_GT_COUNT=0,1,0;RAW_MQandDP=113938,41;ReadPosRankSum=0.811;VarDP=25 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:10,15,0:25:99:0|1:2303789_ATGGG_A:444,0,236,473,280,753:2303789:8,2,7,8 +chrX 2303802 . T . . END=2303844 GT:DP:GQ:MIN_DP:PL 0/0:23:37:22:0,37,586 +chrX 2303845 . ATGGATGGG A, 340.60 . AS_QUALapprox=|348|0;AS_VarDP=3|16|0;BaseQRankSum=1.598;DP=41;MQRankSum=0.968;QUALapprox=348;RAW_GT_COUNT=0,1,0;RAW_MQandDP=116300,41;ReadPosRankSum=1.568;VarDP=19 GT:AD:DP:GQ:PL:SB 0/1:3,16,0:19:81:348,0,81,357,126,483:2,1,5,11 +chrX 2303854 . T . . END=2303872 GT:DP:GQ:MIN_DP:PL 0/0:29:59:29:0,59,762 +chrX 2303873 . ATGGG A, 0.67 . AS_QUALapprox=|7|0;AS_VarDP=24|3|0;BaseQRankSum=-0.545;DP=44;MQRankSum=-1.201;QUALapprox=7;RAW_GT_COUNT=0,1,0;RAW_MQandDP=133887,44;ReadPosRankSum=0.924;VarDP=27 GT:AD:DP:GQ:PL:SB 0/1:24,3,0:27:7:7,0,532,76,541,617:8,16,2,1 +chrX 2303878 . T . . END=2303894 GT:DP:GQ:MIN_DP:PL 0/0:38:22:34:0,22,932 +chrX 2303895 . G . . END=2303900 GT:DP:GQ:MIN_DP:PL 0/0:40:0:27:0,0,0 +chrX 2303901 . A . . END=2303942 GT:DP:GQ:MIN_DP:PL 0/0:40:62:40:0,62,1047 +chrX 2303943 . C . . END=2303943 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,793 +chrX 2303944 . G . . END=2303950 GT:DP:GQ:MIN_DP:PL 0/0:37:73:37:0,73,1081 +chrX 2303951 . T . . END=2303951 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,902 +chrX 2303952 . G . . END=2304009 GT:DP:GQ:MIN_DP:PL 0/0:36:62:36:0,62,915 +chrX 2304010 . C . . END=2304010 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,740 +chrX 2304011 . G . . END=2304019 GT:DP:GQ:MIN_DP:PL 0/0:33:30:32:0,30,872 +chrX 2304020 . A . . END=2304020 GT:DP:GQ:MIN_DP:PL 0/0:32:3:32:0,3,664 +chrX 2304021 . A . . END=2304021 GT:DP:GQ:MIN_DP:PL 0/0:32:36:32:0,36,862 +chrX 2304022 . C . . END=2304023 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,616 +chrX 2304024 . G . . END=2304040 GT:DP:GQ:MIN_DP:PL 0/0:32:37:31:0,37,907 +chrX 2304041 . ATGGATGGATGGATGGATGGATGGG A, 55.60 . AS_QUALapprox=|63|0;AS_VarDP=18|3|0;BaseQRankSum=1.263;DP=31;MQRankSum=-0.908;QUALapprox=63;RAW_GT_COUNT=0,1,0;RAW_MQandDP=105377,31;ReadPosRankSum=0.758;VarDP=21 GT:AD:DP:GQ:PL:SB 0/1:18,3,0:21:63:63,0,631,116,641,758:12,6,2,1 +chrX 2304066 . T . . END=2304094 GT:DP:GQ:MIN_DP:PL 0/0:18:42:18:0,42,461 +chrX 2304095 . T G, 68.64 . AS_QUALapprox=|76|0;AS_VarDP=13|4|0;BaseQRankSum=-0.781;DP=22;MQRankSum=0.819;QUALapprox=76;RAW_GT_COUNT=0,1,0;RAW_MQandDP=73362,22;ReadPosRankSum=-0.135;VarDP=17 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:13,4,0:17:76:0|1:2304095_T_G:76,0,459,104,481,645:2304095:7,6,3,0 +chrX 2304096 . G . . END=2304106 GT:DP:GQ:MIN_DP:PL 0/0:19:42:19:0,42,630 +chrX 2304107 . A . . END=2304107 GT:DP:GQ:MIN_DP:PL 0/0:25:11:25:0,11,695 +chrX 2304108 . G . . END=2304111 GT:DP:GQ:MIN_DP:PL 0/0:22:45:22:0,45,675 +chrX 2304112 . GATGGATGGATAA G, 364.60 . AS_QUALapprox=|372|0;AS_VarDP=11|10|0;BaseQRankSum=0.073;DP=27;MQRankSum=-0.801;QUALapprox=372;RAW_GT_COUNT=0,1,0;RAW_MQandDP=86483,27;ReadPosRankSum=2.083;VarDP=21 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:11,10,0:21:99:0|1:2304112_GATGGATGGATAA_G:372,0,341,405,372,777:2304112:5,6,5,5 +chrX 2304125 . A . . END=2304139 GT:DP:GQ:MIN_DP:PL 0/0:20:42:20:0,42,630 +chrX 2304140 . A G, 68.64 . AS_QUALapprox=|76|0;AS_VarDP=18|6|0;BaseQRankSum=-1.445;DP=25;MQRankSum=0.083;QUALapprox=76;RAW_GT_COUNT=0,1,0;RAW_MQandDP=77253,25;ReadPosRankSum=0.946;VarDP=24 GT:AD:DP:GQ:PL:SB 0/1:18,6,0:24:76:76,0,683,130,698,828:12,6,1,5 +chrX 2304141 . A . . END=2304169 GT:DP:GQ:MIN_DP:PL 0/0:25:36:23:0,36,540 +chrX 2304170 . C . . END=2304170 GT:DP:GQ:MIN_DP:PL 0/0:21:0:21:0,0,511 +chrX 2304171 . T G, 364.64 . AS_QUALapprox=|372|0;AS_VarDP=12|11|0;BaseQRankSum=-1.167;DP=23;MQRankSum=-0.378;QUALapprox=372;RAW_GT_COUNT=0,1,0;RAW_MQandDP=68628,23;ReadPosRankSum=0.062;VarDP=23 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:12,11,0:23:99:0|1:2304112_GATGGATGGATAA_G:372,0,357,406,391,797:2304112:8,4,8,3 +chrX 2304172 . G . . END=2304202 GT:DP:GQ:MIN_DP:PL 0/0:32:47:32:0,47,900 +chrX 2304203 . A . . END=2304203 GT:DP:GQ:MIN_DP:PL 0/0:32:11:32:0,11,802 +chrX 2304204 . AATGG A, 547.02 . AS_QUALapprox=|561|0;AS_VarDP=0|13|0;DP=17;QUALapprox=561;RAW_GT_COUNT=0,0,1;RAW_MQandDP=56436,17;VarDP=13 GT:AD:DP:GQ:PL:SB 1/1:0,13,0:13:39:561,39,0,561,39,561:0,0,10,3 +chrX 2304209 . A . . END=2304292 GT:DP:GQ:MIN_DP:PL 0/0:17:36:17:0,36,491 +chrX 2304293 . G A, 386.64 . AS_QUALapprox=|394|0;AS_VarDP=11|16|0;BaseQRankSum=-0.610;DP=36;MQRankSum=-1.447;QUALapprox=394;RAW_GT_COUNT=0,1,0;RAW_MQandDP=102963,36;ReadPosRankSum=0.000;VarDP=27 GT:AD:DP:GQ:PL:SB 0/1:11,16,0:27:99:394,0,275,427,322,749:10,1,10,6 +chrX 2304294 . T . . END=2304338 GT:DP:GQ:MIN_DP:PL 0/0:37:43:35:0,43,947 +chrX 2304339 . T TGATGGATG, 570.60 . AS_QUALapprox=|578|0;AS_VarDP=17|16|0;BaseQRankSum=0.219;DP=40;MQRankSum=-0.542;QUALapprox=578;RAW_GT_COUNT=0,1,0;RAW_MQandDP=131072,40;ReadPosRankSum=-1.859;VarDP=33 GT:AD:DP:GQ:PL:SB 0/1:17,16,0:33:99:578,0,636,629,684,1313:8,9,11,5 +chrX 2304340 . G . . END=2304362 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,108,1620 +chrX 2304363 . A . . END=2304363 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,1191 +chrX 2304364 . G . . END=2304978 GT:DP:GQ:MIN_DP:PL 0/0:57:78:57:0,78,1494 +chrX 2304979 . G A, 596.64 . AS_QUALapprox=|604|0;AS_VarDP=26|24|0;BaseQRankSum=-1.714;DP=52;MQRankSum=0.000;QUALapprox=604;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=0.049;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:26,24,0:50:99:604,0,707,682,779,1461:16,10,12,12 +chrX 2304980 . A . . END=2305417 GT:DP:GQ:MIN_DP:PL 0/0:52:73:52:0,73,1390 +chrX 2305418 . G A, 599.64 . AS_QUALapprox=|607|0;AS_VarDP=27|22|0;BaseQRankSum=1.188;DP=51;MQRankSum=1.319;QUALapprox=607;RAW_GT_COUNT=0,1,0;RAW_MQandDP=181016,51;ReadPosRankSum=-1.397;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:27,22,0:49:99:607,0,751,689,817,1506:16,11,13,9 +chrX 2305419 . G . . END=2305800 GT:DP:GQ:MIN_DP:PL 0/0:54:73:54:0,73,1081 +chrX 2305801 . G A, 426.64 . AS_QUALapprox=|434|0;AS_VarDP=18|16|0;BaseQRankSum=-0.596;DP=36;MQRankSum=0.000;QUALapprox=434;RAW_GT_COUNT=0,1,0;RAW_MQandDP=127764,36;ReadPosRankSum=-1.571;VarDP=34 GT:AD:DP:GQ:PL:SB 0/1:18,16,0:34:99:434,0,499,488,547,1035:13,5,12,4 +chrX 2305802 . G . . END=2306018 GT:DP:GQ:MIN_DP:PL 0/0:56:49:56:0,49,763 +chrX 2306019 . CT C, 1786.03 . AS_QUALapprox=|1800|0;AS_VarDP=0|51|0;DP=53;QUALapprox=1800;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1800,153,0,1800,153,1800:0,0,25,26 +chrX 2306021 . T . . END=2306293 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,100,1631 +chrX 2306294 . C T, 699.64 . AS_QUALapprox=|707|0;AS_VarDP=29|27|0;BaseQRankSum=1.138;DP=57;MQRankSum=0.000;QUALapprox=707;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=0.041;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:29,27,0:56:99:707,0,706,793,786,1579:14,15,16,11 +chrX 2306295 . T . . END=2306405 GT:DP:GQ:MIN_DP:PL 0/0:62:91:62:0,91,1373 +chrX 2306406 . C G, 639.64 . AS_QUALapprox=|647|0;AS_VarDP=18|23|0;BaseQRankSum=-0.689;DP=42;MQRankSum=0.000;QUALapprox=647;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151200,42;ReadPosRankSum=1.183;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:18,23,0:41:99:647,0,478,700,547,1247:8,10,7,16 +chrX 2306407 . T . . END=2306462 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,99,1485 +chrX 2306463 . C CT, 450.60 . AS_QUALapprox=|458|0;AS_VarDP=14|25|0;BaseQRankSum=-0.473;DP=51;MQRankSum=-0.695;QUALapprox=458;RAW_GT_COUNT=0,1,0;RAW_MQandDP=181600,51;ReadPosRankSum=-0.234;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:14,25,0:39:99:458,0,222,500,296,797:6,8,16,9 +chrX 2306464 . T . . END=2306514 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,108,1620 +chrX 2306515 . G A, 828.64 . AS_QUALapprox=|836|0;AS_VarDP=23|31|0;BaseQRankSum=0.711;DP=57;MQRankSum=0.000;QUALapprox=836;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=0.184;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:23,31,0:54:99:836,0,493,903,586,1489:10,13,13,18 +chrX 2306516 . C . . END=2306595 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 2306596 . A G, 1088.64 . AS_QUALapprox=|1096|0;AS_VarDP=37|29|0;BaseQRankSum=0.804;DP=66;MQRankSum=0.000;QUALapprox=1096;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=-0.198;VarDP=66 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:37,29,0:66:99:0|1:2306596_A_G:1096,0,1422,1207,1509,2716:2306596:14,23,11,18 +chrX 2306597 . C . . END=2306597 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 2306598 . G A, 1088.64 . AS_QUALapprox=|1096|0;AS_VarDP=37|29|0;BaseQRankSum=0.586;DP=68;MQRankSum=0.000;QUALapprox=1096;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=-0.391;VarDP=66 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:37,29,0:66:99:0|1:2306596_A_G:1096,0,1422,1207,1509,2716:2306596:14,23,11,18 +chrX 2306599 . C . . END=2306630 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 2306631 . G T, 773.64 . AS_QUALapprox=|781|0;AS_VarDP=29|28|0;BaseQRankSum=0.826;DP=59;MQRankSum=0.000;QUALapprox=781;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-1.661;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:29,28,0:57:99:781,0,794,868,878,1747:10,19,12,16 +chrX 2306632 . T . . END=2306698 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 2306699 . G A, 796.64 . AS_QUALapprox=|804|0;AS_VarDP=28|30|0;BaseQRankSum=-0.210;DP=58;MQRankSum=0.000;QUALapprox=804;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=1.518;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:28,30,0:58:99:804,0,744,887,834,1721:11,17,14,16 +chrX 2306700 . T . . END=2306744 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 2306745 . T A, 806.64 . AS_QUALapprox=|814|0;AS_VarDP=23|31|0;BaseQRankSum=-0.549;DP=56;MQRankSum=0.000;QUALapprox=814;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-0.306;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:23,31,0:54:99:814,0,598,883,690,1574:11,12,19,12 +chrX 2306746 . A . . END=2306925 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,105,1641 +chrX 2306926 . CTT C, 457.60 . AS_QUALapprox=|465|0;AS_VarDP=28|17|0;BaseQRankSum=-0.556;DP=56;MQRankSum=0.000;QUALapprox=465;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-0.880;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:28,17,0:45:99:465,0,850,549,901,1450:18,10,8,9 +chrX 2306929 . T . . END=2306987 GT:DP:GQ:MIN_DP:PL 0/0:52:62:47:0,62,1265 +chrX 2306988 . C T, 744.64 . AS_QUALapprox=|752|0;AS_VarDP=29|21|0;BaseQRankSum=1.436;DP=51;MQRankSum=0.000;QUALapprox=752;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=0.707;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,21,0:50:99:0|1:2306988_C_T:752,0,1057,839,1120,1958:2306988:13,16,9,12 +chrX 2306989 . A . . END=2307010 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 2307011 . C T, 753.64 . AS_QUALapprox=|761|0;AS_VarDP=30|22|0;BaseQRankSum=-0.241;DP=54;MQRankSum=0.000;QUALapprox=761;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=0.297;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:30,22,0:52:99:0|1:2306988_C_T:761,0,1110,852,1176,2028:2306988:13,17,8,14 +chrX 2307012 . T . . END=2307099 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 2307100 . C G, 570.64 . AS_QUALapprox=|578|0;AS_VarDP=29|23|0;BaseQRankSum=-1.148;DP=56;MQRankSum=0.000;QUALapprox=578;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=0.147;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:29,23,0:52:99:578,0,822,666,891,1556:12,17,9,14 +chrX 2307101 . T . . END=2307146 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 2307147 . T G, 899.64 . AS_QUALapprox=|907|0;AS_VarDP=25|33|0;BaseQRankSum=-1.626;DP=59;MQRankSum=0.000;QUALapprox=907;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-0.401;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:25,33,0:58:99:907,0,705,982,804,1786:8,17,19,14 +chrX 2307148 . C . . END=2307539 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,109,1572 +chrX 2307540 . G C, 779.64 . AS_QUALapprox=|787|0;AS_VarDP=18|29|0;BaseQRankSum=-1.171;DP=48;MQRankSum=0.000;QUALapprox=787;RAW_GT_COUNT=0,1,0;RAW_MQandDP=170289,48;ReadPosRankSum=0.011;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:18,29,0:47:99:787,0,475,841,562,1403:8,10,11,18 +chrX 2307541 . A . . END=2307763 GT:DP:GQ:MIN_DP:PL 0/0:50:44:50:0,44,1300 +chrX 2307764 . CA C, 746.03 . AS_QUALapprox=|760|0;AS_VarDP=3|31|0;BaseQRankSum=1.162;DP=55;MQRankSum=-0.372;QUALapprox=760;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194050,55;ReadPosRankSum=0.642;VarDP=34 GT:AD:DP:GQ:PL:SB 1/1:3,31,0:34:54:760,54,0,769,93,808:0,3,17,14 +chrX 2307766 . A . . END=2307797 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,105,1414 +chrX 2307798 . T A, 733.64 . AS_QUALapprox=|741|0;AS_VarDP=30|22|0;BaseQRankSum=1.843;DP=56;MQRankSum=0.298;QUALapprox=741;RAW_GT_COUNT=0,1,0;RAW_MQandDP=197210,56;ReadPosRankSum=0.991;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:30,22,0:52:99:0|1:2307798_T_A:741,0,1102,832,1168,1999:2307798:15,15,13,9 +chrX 2307799 . A . . END=2307802 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 2307803 . T A, 727.64 . AS_QUALapprox=|735|0;AS_VarDP=32|22|0;BaseQRankSum=1.906;DP=61;MQRankSum=0.244;QUALapprox=735;RAW_GT_COUNT=0,1,0;RAW_MQandDP=215210,61;ReadPosRankSum=0.498;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:32,22,0:54:99:0|1:2307798_T_A:735,0,1165,832,1230,2062:2307798:17,15,13,9 +chrX 2307804 . A . . END=2307928 GT:DP:GQ:MIN_DP:PL 0/0:60:75:60:0,75,1410 +chrX 2307929 . A G, 894.64 . AS_QUALapprox=|902|0;AS_VarDP=29|34|0;BaseQRankSum=-1.220;DP=64;MQRankSum=0.000;QUALapprox=902;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=1.593;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:29,34,0:63:99:902,0,779,989,881,1870:14,15,21,13 +chrX 2307930 . C . . END=2308006 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 2308007 . C T, 720.64 . AS_QUALapprox=|728|0;AS_VarDP=23|27|0;BaseQRankSum=-0.407;DP=50;MQRankSum=0.000;QUALapprox=728;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=-1.840;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:23,27,0:50:99:728,0,609,797,690,1487:8,15,11,16 +chrX 2308008 . G . . END=2308135 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,113,1574 +chrX 2308136 . A G, 2079.06 . AS_QUALapprox=|2093|0;AS_VarDP=1|65|0;BaseQRankSum=2.341;DP=67;MQRankSum=0.000;QUALapprox=2093;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;ReadPosRankSum=0.315;VarDP=66 GT:AD:DP:GQ:PL:SB 1/1:1,65,0:66:99:2093,188,0,2095,195,2102:1,0,37,28 +chrX 2308137 . A . . END=2308301 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 2308302 . G C, 700.64 . AS_QUALapprox=|708|0;AS_VarDP=26|27|0;BaseQRankSum=-0.834;DP=54;MQRankSum=0.000;QUALapprox=708;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=-1.255;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:26,27,0:53:99:708,0,690,786,771,1557:12,14,13,14 +chrX 2308303 . T . . END=2308420 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,107,1459 +chrX 2308421 . C G, 735.64 . AS_QUALapprox=|743|0;AS_VarDP=18|27|0;BaseQRankSum=-0.927;DP=47;MQRankSum=0.000;QUALapprox=743;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=-0.301;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:18,27,0:45:99:743,0,470,797,552,1349:7,11,14,13 +chrX 2308422 . A . . END=2308504 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,104,1269 +chrX 2308505 . G C, 1336.06 . AS_QUALapprox=|1350|0;AS_VarDP=0|42|0;DP=46;QUALapprox=1350;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;VarDP=42 GT:AD:DP:GQ:PL:SB 1/1:0,42,0:42:99:1350,126,0,1350,126,1350:0,0,24,18 +chrX 2308506 . A . . END=2308898 GT:DP:GQ:MIN_DP:PL 0/0:48:82:48:0,82,1235 +chrX 2308899 . A AGGAAG, 1029.60 . AS_QUALapprox=|1037|0;AS_VarDP=19|27|0;BaseQRankSum=0.974;DP=49;MQRankSum=0.000;QUALapprox=1037;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=-0.458;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:19,27,0:46:99:1037,0,690,1095,771,1866:10,9,17,10 +chrX 2308900 . G . . END=2308963 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,107,1359 +chrX 2308964 . C A, 1089.64 . AS_QUALapprox=|1097|0;AS_VarDP=20|39|0;BaseQRankSum=1.636;DP=60;MQRankSum=0.000;QUALapprox=1097;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=0.160;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:20,39,0:59:99:1097,0,448,1157,565,1722:12,8,18,21 +chrX 2308965 . T . . END=2309001 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 2309002 . T G, 1970.06 . AS_QUALapprox=|1984|0;AS_VarDP=0|62|0;DP=62;QUALapprox=1984;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:0,62,0:62:99:1984,186,0,1984,186,1984:0,0,31,31 +chrX 2309003 . T . . END=2310091 GT:DP:GQ:MIN_DP:PL 0/0:60:82:60:0,82,1414 +chrX 2310092 . T C, 1845.06 . AS_QUALapprox=|1859|0;AS_VarDP=0|57|0;DP=57;QUALapprox=1859;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1859,171,0,1859,171,1859:0,0,30,27 +chrX 2310093 . T . . END=2310527 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,108,1620 +chrX 2310528 . C CTG, 732.60 . AS_QUALapprox=|740|0;AS_VarDP=21|24|0;BaseQRankSum=-0.246;DP=54;MQRankSum=0.000;QUALapprox=740;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=-4.166;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:21,24,0:45:99:740,0,670,804,741,1545:11,10,10,14 +chrX 2310529 . T . . END=2310857 GT:DP:GQ:MIN_DP:PL 0/0:50:86:50:0,86,1278 +chrX 2310858 . C T, 704.64 . AS_QUALapprox=|712|0;AS_VarDP=18|27|0;BaseQRankSum=0.014;DP=47;MQRankSum=0.000;QUALapprox=712;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=-1.124;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:18,27,0:45:99:712,0,430,766,511,1278:11,7,11,16 +chrX 2310859 . G . . END=2311060 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,103,1247 +chrX 2311061 . CAA C,CA, 878.02 . AS_QUALapprox=|526|566|0;AS_VarDP=0|17|16|0;DP=47;QUALapprox=895;RAW_GT_COUNT=0,0,1;RAW_MQandDP=166338,47;VarDP=33 GT:AD:DP:GQ:PL:SB 1/2:0,17,16,0:33:99:895,369,429,418,0,329,862,431,419,884:0,0,15,18 +chrX 2311064 . A . . END=2311749 GT:DP:GQ:MIN_DP:PL 0/0:55:54:55:0,54,1160 +chrX 2311750 . G A, 805.64 . AS_QUALapprox=|813|0;AS_VarDP=22|28|0;BaseQRankSum=2.390;DP=52;MQRankSum=0.000;QUALapprox=813;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=-0.313;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:22,28,0:50:99:813,0,554,879,639,1518:11,11,13,15 +chrX 2311751 . T . . END=2311902 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,110,1514 +chrX 2311903 . A G, 1686.06 . AS_QUALapprox=|1700|0;AS_VarDP=0|53|0;DP=55;QUALapprox=1700;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1700,158,0,1700,158,1700:0,0,26,27 +chrX 2311904 . G . . END=2312127 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,106,1405 +chrX 2312128 . T G, 1682.06 . AS_QUALapprox=|1696|0;AS_VarDP=0|53|0;DP=53;QUALapprox=1696;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1696,159,0,1696,159,1696:0,0,29,24 +chrX 2312129 . G . . END=2312859 GT:DP:GQ:MIN_DP:PL 0/0:61:62:61:0,62,1222 +chrX 2312860 . C A, 893.64 . AS_QUALapprox=|901|0;AS_VarDP=28|33|0;BaseQRankSum=0.326;DP=64;MQRankSum=0.000;QUALapprox=901;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=-0.340;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:28,33,0:61:99:901,0,749,985,848,1833:13,15,17,16 +chrX 2312861 . A . . END=2313005 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 2313006 . A AT, 468.60 . AS_QUALapprox=|476|0;AS_VarDP=20|24|0;BaseQRankSum=-1.156;DP=58;MQRankSum=-0.867;QUALapprox=476;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205136,58;ReadPosRankSum=-0.589;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:20,24,0:44:99:476,0,392,536,463,1000:12,8,11,13 +chrX 2313007 . T . . END=2313284 GT:DP:GQ:MIN_DP:PL 0/0:48:35:43:0,35,1146 +chrX 2313285 . G C, 608.64 . AS_QUALapprox=|616|0;AS_VarDP=25|24|0;BaseQRankSum=-1.461;DP=53;MQRankSum=1.021;QUALapprox=616;RAW_GT_COUNT=0,1,0;RAW_MQandDP=189409,53;ReadPosRankSum=-0.660;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:25,24,0:49:99:616,0,691,691,763,1453:12,13,10,14 +chrX 2313286 . G . . END=2313514 GT:DP:GQ:MIN_DP:PL 0/0:52:97:52:0,97,1341 +chrX 2313515 . A C, 1211.06 . AS_QUALapprox=|1225|0;AS_VarDP=0|38|0;DP=42;QUALapprox=1225;RAW_GT_COUNT=0,0,1;RAW_MQandDP=148736,42;VarDP=38 GT:AD:DP:GQ:PL:SB 1/1:0,38,0:38:99:1225,114,0,1225,114,1225:0,0,22,16 +chrX 2313516 . G . . END=2313618 GT:DP:GQ:MIN_DP:PL 0/0:40:75:40:0,75,1081 +chrX 2313619 . G A, 524.64 . AS_QUALapprox=|532|0;AS_VarDP=21|20|0;BaseQRankSum=-0.829;DP=43;MQRankSum=-0.976;QUALapprox=532;RAW_GT_COUNT=0,1,0;RAW_MQandDP=153225,43;ReadPosRankSum=1.187;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:21,20,0:41:99:532,0,571,595,631,1225:8,13,11,9 +chrX 2313620 . G . . END=2313655 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,108,1256 +chrX 2313656 . G C, 522.64 . AS_QUALapprox=|530|0;AS_VarDP=20|20|0;BaseQRankSum=0.348;DP=41;MQRankSum=0.000;QUALapprox=530;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147600,41;ReadPosRankSum=-1.434;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:20,20,0:40:99:530,0,535,590,595,1185:11,9,9,11 +chrX 2313657 . A . . END=2313705 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,111,1665 +chrX 2313706 . A G, 667.64 . AS_QUALapprox=|675|0;AS_VarDP=29|25|0;BaseQRankSum=0.550;DP=56;MQRankSum=0.000;QUALapprox=675;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=0.564;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:29,25,0:54:99:675,0,796,762,871,1633:15,14,11,14 +chrX 2313707 . A . . END=2313764 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 2313765 . C T, 937.64 . AS_QUALapprox=|945|0;AS_VarDP=21|34|0;BaseQRankSum=-1.054;DP=59;MQRankSum=0.000;QUALapprox=945;RAW_GT_COUNT=0,1,0;RAW_MQandDP=209956,59;ReadPosRankSum=-0.581;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:21,34,0:55:99:945,0,545,1008,647,1655:9,12,19,15 +chrX 2313766 . C . . END=2313952 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,119,1663 +chrX 2313953 . C T, 1757.06 . AS_QUALapprox=|1771|0;AS_VarDP=1|55|0;BaseQRankSum=2.303;DP=59;MQRankSum=0.000;QUALapprox=1771;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;ReadPosRankSum=-1.362;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:1,55,0:56:99:1771,158,0,1773,165,1780:0,1,26,29 +chrX 2313954 . T . . END=2314123 GT:DP:GQ:MIN_DP:PL 0/0:47:97:47:0,97,1126 +chrX 2314124 . C T, 1137.06 . AS_QUALapprox=|1151|0;AS_VarDP=0|36|0;DP=51;QUALapprox=1151;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180809,51;VarDP=36 GT:AD:DP:GQ:PL:SB 1/1:0,36,0:36:99:1151,107,0,1151,107,1151:0,0,15,21 +chrX 2314125 . A . . END=2314174 GT:DP:GQ:MIN_DP:PL 0/0:38:79:38:0,79,936 +chrX 2314175 . C . . END=2314175 GT:DP:GQ:MIN_DP:PL 0/0:33:14:33:0,14,767 +chrX 2314176 . G . . END=2314197 GT:DP:GQ:MIN_DP:PL 0/0:37:30:34:0,30,938 +chrX 2314198 . A . . END=2314199 GT:DP:GQ:MIN_DP:PL 0/0:36:0:34:0,0,642 +chrX 2314200 . G . . END=2314204 GT:DP:GQ:MIN_DP:PL 0/0:24:57:24:0,57,855 +chrX 2314205 . AGAGGGAGGGAAGGAGGGAAGGAAGG A, 244.60 . AS_QUALapprox=|252|0;AS_VarDP=14|7|0;BaseQRankSum=0.825;DP=35;MQRankSum=0.000;QUALapprox=252;RAW_GT_COUNT=0,1,0;RAW_MQandDP=121842,35;ReadPosRankSum=-0.772;VarDP=21 GT:AD:DP:GQ:PL:SB 0/1:14,7,0:21:99:252,0,473,294,494,788:3,11,3,4 +chrX 2314206 . GAGGGAGGGAAGGAGGGAAGGAAGGGAGGGAGGGAAGGA G,*, 409 . AS_QUALapprox=|446|0|0;AS_VarDP=3|11|7|0;DP=37;MQRankSum=0.000;QUALapprox=704;RAW_GT_COUNT=0,0,1;RAW_MQandDP=127291,37;VarDP=21 GT:AD:DP:GQ:PL:SB 1/2:3,11,7,0:21:99:704,258,327,419,0,435,714,330,460,783:1,2,5,13 +chrX 2314245 . A . . END=2314264 GT:DP:GQ:MIN_DP:PL 0/0:23:0:23:0,0,119 +chrX 2314265 . A . . END=2314265 GT:DP:GQ:MIN_DP:PL 0/0:26:29:26:0,29,695 +chrX 2314266 . A . . END=2314266 GT:DP:GQ:MIN_DP:PL 0/0:25:0:25:0,0,382 +chrX 2314267 . G . . END=2314274 GT:DP:GQ:MIN_DP:PL 0/0:26:22:22:0,22,609 +chrX 2314275 . T . . END=2314275 GT:DP:GQ:MIN_DP:PL 0/0:19:0:19:0,0,271 +chrX 2314276 . G . . END=2314285 GT:DP:GQ:MIN_DP:PL 0/0:21:22:19:0,22,511 +chrX 2314286 . A . . END=2314286 GT:DP:GQ:MIN_DP:PL 0/0:17:16:17:0,16,451 +chrX 2314287 . G . . END=2314293 GT:DP:GQ:MIN_DP:PL 0/0:19:22:18:0,22,405 +chrX 2314294 . A . . END=2314295 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,275 +chrX 2314296 . G . . END=2314296 GT:DP:GQ:MIN_DP:PL 0/0:16:24:16:0,24,360 +chrX 2314297 . A . . END=2314297 GT:DP:GQ:MIN_DP:PL 0/0:17:16:17:0,16,441 +chrX 2314298 . G . . END=2314298 GT:DP:GQ:MIN_DP:PL 0/0:16:27:16:0,27,405 +chrX 2314299 . G . . END=2314306 GT:DP:GQ:MIN_DP:PL 0/0:18:0:18:0,0,347 +chrX 2314307 . G . . END=2314308 GT:DP:GQ:MIN_DP:PL 0/0:18:27:18:0,27,405 +chrX 2314309 . A . . END=2314309 GT:DP:GQ:MIN_DP:PL 0/0:18:19:18:0,19,476 +chrX 2314310 . G . . END=2314311 GT:DP:GQ:MIN_DP:PL 0/0:19:22:19:0,22,360 +chrX 2314312 . G . . END=2314317 GT:DP:GQ:MIN_DP:PL 0/0:18:0:18:0,0,0 +chrX 2314318 . G . . END=2314319 GT:DP:GQ:MIN_DP:PL 0/0:16:24:16:0,24,360 +chrX 2314320 . G . . END=2314320 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,387 +chrX 2314321 . A . . END=2314323 GT:DP:GQ:MIN_DP:PL 0/0:15:24:15:0,24,360 +chrX 2314324 . G . . END=2314324 GT:DP:GQ:MIN_DP:PL 0/0:14:7:14:0,7,397 +chrX 2314325 . A . . END=2314325 GT:DP:GQ:MIN_DP:PL 0/0:14:24:14:0,24,360 +chrX 2314326 . A . . END=2314326 GT:DP:GQ:MIN_DP:PL 0/0:13:0:13:0,0,154 +chrX 2314327 . G . . END=2314327 GT:DP:GQ:MIN_DP:PL 0/0:14:21:14:0,21,315 +chrX 2314328 . G . . END=2314329 GT:DP:GQ:MIN_DP:PL 0/0:15:0:15:0,0,258 +chrX 2314330 . G . . END=2314330 GT:DP:GQ:MIN_DP:PL 0/0:17:27:17:0,27,405 +chrX 2314331 . G . . END=2314334 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,258 +chrX 2314335 . G . . END=2314335 GT:DP:GQ:MIN_DP:PL 0/0:15:24:15:0,24,360 +chrX 2314336 . G . . END=2314337 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,59 +chrX 2314338 . G . . END=2314338 GT:DP:GQ:MIN_DP:PL 0/0:13:21:13:0,21,315 +chrX 2314339 . G . . END=2314346 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,0 +chrX 2314347 . G . . END=2314347 GT:DP:GQ:MIN_DP:PL 0/0:13:24:13:0,24,360 +chrX 2314348 . G . . END=2314355 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,0 +chrX 2314356 . G . . END=2314356 GT:DP:GQ:MIN_DP:PL 0/0:17:26:17:0,26,532 +chrX 2314357 . G . . END=2314363 GT:DP:GQ:MIN_DP:PL 0/0:18:0:18:0,0,229 +chrX 2314364 . G . . END=2314364 GT:DP:GQ:MIN_DP:PL 0/0:21:38:21:0,38,630 +chrX 2314365 . G . . END=2314367 GT:DP:GQ:MIN_DP:PL 0/0:19:0:19:0,0,153 +chrX 2314368 . G . . END=2314368 GT:DP:GQ:MIN_DP:PL 0/0:22:31:22:0,31,675 +chrX 2314369 . A . . END=2314371 GT:DP:GQ:MIN_DP:PL 0/0:24:0:24:0,0,0 +chrX 2314372 . G . . END=2314372 GT:DP:GQ:MIN_DP:PL 0/0:23:34:23:0,34,710 +chrX 2314373 . G . . END=2314383 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,0 +chrX 2314384 . G . . END=2314384 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,113,1534 +chrX 2314385 . A . . END=2314386 GT:DP:GQ:MIN_DP:PL 0/0:56:0:56:0,0,0 +chrX 2314387 . G . . END=2314387 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 2314388 . G . . END=2314389 GT:DP:GQ:MIN_DP:PL 0/0:66:0:66:0,0,42 +chrX 2314390 . A . . END=2314396 GT:DP:GQ:MIN_DP:PL 0/0:87:99:87:0,120,1800 +chrX 2314397 . A . . END=2314397 GT:DP:GQ:MIN_DP:PL 0/0:105:0:105:0,0,2542 +chrX 2314398 . A . . END=2314398 GT:DP:GQ:MIN_DP:PL 0/0:120:99:120:0,120,1800 +chrX 2314399 . G . . END=2314399 GT:DP:GQ:MIN_DP:PL 0/0:112:0:112:0,0,2431 +chrX 2314400 . G . . END=2314401 GT:DP:GQ:MIN_DP:PL 0/0:130:99:130:0,120,1800 +chrX 2314402 . A . . END=2314403 GT:DP:GQ:MIN_DP:PL 0/0:131:0:131:0,0,0 +chrX 2314404 . A . . END=2314454 GT:DP:GQ:MIN_DP:PL 0/0:261:99:261:0,120,1800 +chrX 2314455 . G . . END=2314455 GT:DP:GQ:MIN_DP:PL 0/0:207:0:207:0,0,4531 +chrX 2314456 . A . . END=2314458 GT:DP:GQ:MIN_DP:PL 0/0:209:99:209:0,120,1800 +chrX 2314459 . A . . END=2314459 GT:DP:GQ:MIN_DP:PL 0/0:179:0:179:0,0,3588 +chrX 2314460 . A . . END=2314466 GT:DP:GQ:MIN_DP:PL 0/0:155:99:155:0,120,1800 +chrX 2314467 . G . . END=2314469 GT:DP:GQ:MIN_DP:PL 0/0:126:0:126:0,0,1614 +chrX 2314470 . G . . END=2314474 GT:DP:GQ:MIN_DP:PL 0/0:104:32:100:0,32,1080 +chrX 2314475 . A . . END=2314476 GT:DP:GQ:MIN_DP:PL 0/0:98:0:98:0,0,545 +chrX 2314477 . G . . END=2314478 GT:DP:GQ:MIN_DP:PL 0/0:99:99:99:0,111,1665 +chrX 2314479 . A . . END=2314479 GT:DP:GQ:MIN_DP:PL 0/0:85:0:85:0,0,1747 +chrX 2314480 . A . . END=2314482 GT:DP:GQ:MIN_DP:PL 0/0:88:85:88:0,85,1710 +chrX 2314483 . A . . END=2314483 GT:DP:GQ:MIN_DP:PL 0/0:80:0:80:0,0,117 +chrX 2314484 . A . . END=2314486 GT:DP:GQ:MIN_DP:PL 0/0:73:99:73:0,108,1620 +chrX 2314487 . A . . END=2314489 GT:DP:GQ:MIN_DP:PL 0/0:58:0:58:0,0,918 +chrX 2314490 . G . . END=2314490 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,108,1620 +chrX 2314491 . G . . END=2314493 GT:DP:GQ:MIN_DP:PL 0/0:52:0:52:0,0,1081 +chrX 2314494 . G . . END=2314494 GT:DP:GQ:MIN_DP:PL 0/0:47:32:47:0,32,1316 +chrX 2314495 . T . . END=2314498 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,0 +chrX 2314499 . G . . END=2314499 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,111,1665 +chrX 2314500 . G . . END=2314501 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,958 +chrX 2314502 . G . . END=2314503 GT:DP:GQ:MIN_DP:PL 0/0:48:44:48:0,44,1300 +chrX 2314504 . T . . END=2314508 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,678 +chrX 2314509 . G . . END=2314513 GT:DP:GQ:MIN_DP:PL 0/0:50:36:45:0,36,1206 +chrX 2314514 . A . . END=2314514 GT:DP:GQ:MIN_DP:PL 0/0:45:6:45:0,6,1226 +chrX 2314515 . G . . END=2314745 GT:DP:GQ:MIN_DP:PL 0/0:57:44:57:0,44,1349 +chrX 2314746 . G C, 673.64 . AS_QUALapprox=|681|0;AS_VarDP=28|26|0;BaseQRankSum=-1.618;DP=56;MQRankSum=0.000;QUALapprox=681;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-0.364;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:28,26,0:54:99:681,0,791,766,869,1635:10,18,14,12 +chrX 2314747 . A . . END=2314990 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,106,1800 +chrX 2314991 . T C, 883.64 . AS_QUALapprox=|891|0;AS_VarDP=37|35|0;BaseQRankSum=0.262;DP=74;MQRankSum=0.000;QUALapprox=891;RAW_GT_COUNT=0,1,0;RAW_MQandDP=266400,74;ReadPosRankSum=-1.116;VarDP=72 GT:AD:DP:GQ:PL:SB 0/1:37,35,0:72:99:891,0,970,1002,1075,2077:23,14,18,17 +chrX 2314992 . C . . END=2315160 GT:DP:GQ:MIN_DP:PL 0/0:57:96:57:0,96,1237 +chrX 2315161 . TA T, 397.60 . AS_QUALapprox=|405|0;AS_VarDP=19|20|0;BaseQRankSum=0.845;DP=48;MQRankSum=1.077;QUALapprox=405;RAW_GT_COUNT=0,1,0;RAW_MQandDP=171761,48;ReadPosRankSum=-2.432;VarDP=39 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:19,20,0:39:99:0|1:2315161_TA_T:405,0,376,462,436,899:2315161:5,14,6,14 +chrX 2315163 . A . . END=2315175 GT:DP:GQ:MIN_DP:PL 0/0:46:92:46:0,92,1455 +chrX 2315176 . C G, 1835.06 . AS_QUALapprox=|1849|0;AS_VarDP=0|47|0;DP=48;QUALapprox=1849;RAW_GT_COUNT=0,0,1;RAW_MQandDP=171761,48;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,47,0:47:99:0|1:2315161_TA_T:1849,141,0,1849,141,1849:2315161:0,0,15,32 +chrX 2315177 . G . . END=2315188 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,106,1504 +chrX 2315189 . G C, 718.64 . AS_QUALapprox=|726|0;AS_VarDP=23|26|0;BaseQRankSum=0.970;DP=52;MQRankSum=0.146;QUALapprox=726;RAW_GT_COUNT=0,1,0;RAW_MQandDP=186161,52;ReadPosRankSum=-0.140;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,26,0:49:99:0|1:2315161_TA_T:726,0,602,796,680,1476:2315161:7,16,10,16 +chrX 2315190 . C . . END=2315300 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 2315301 . A G, 872.64 . AS_QUALapprox=|880|0;AS_VarDP=32|32|0;BaseQRankSum=0.694;DP=64;MQRankSum=0.000;QUALapprox=880;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=1.397;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:32,32,0:64:99:880,0,860,976,956,1932:14,18,19,13 +chrX 2315302 . C . . END=2315353 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 2315354 . G C, 703.64 . AS_QUALapprox=|711|0;AS_VarDP=35|26|0;BaseQRankSum=2.481;DP=61;MQRankSum=0.000;QUALapprox=711;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=1.970;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:35,26,0:61:99:711,0,918,816,996,1812:19,16,14,12 +chrX 2315355 . A . . END=2315561 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 2315562 . G C, 2141.06 . AS_QUALapprox=|2155|0;AS_VarDP=0|64|0;DP=66;QUALapprox=2155;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=64 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:2155,192,0,2155,192,2155:0,0,27,37 +chrX 2315563 . T . . END=2315651 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 2315652 . T C, 1915.06 . AS_QUALapprox=|1929|0;AS_VarDP=0|58|0;DP=61;QUALapprox=1929;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=58 GT:AD:DP:GQ:PL:SB 1/1:0,58,0:58:99:1929,174,0,1929,174,1929:0,0,25,33 +chrX 2315653 . T . . END=2316338 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,107,1629 +chrX 2316339 . C G, 683.64 . AS_QUALapprox=|691|0;AS_VarDP=21|25|0;BaseQRankSum=-1.186;DP=49;MQRankSum=1.135;QUALapprox=691;RAW_GT_COUNT=0,1,0;RAW_MQandDP=175716,49;ReadPosRankSum=-1.722;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:21,25,0:46:99:691,0,582,754,657,1411:8,13,9,16 +chrX 2316340 . T . . END=2316386 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,110,1534 +chrX 2316387 . A G, 594.64 . AS_QUALapprox=|602|0;AS_VarDP=22|22|0;BaseQRankSum=-1.747;DP=50;MQRankSum=0.000;QUALapprox=602;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=1.855;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:22,22,0:44:99:602,0,633,669,699,1367:9,13,14,8 +chrX 2316388 . C . . END=2317245 GT:DP:GQ:MIN_DP:PL 0/0:61:50:61:0,50,1300 +chrX 2317246 . C . . END=2317255 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,769 +chrX 2317256 . C CTTT,CTTTTTTTTTTT, 1084.02 . AS_QUALapprox=|810|371|0;AS_VarDP=0|18|9|0;DP=39;QUALapprox=1101;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126822,39;VarDP=27 GT:AD:DP:GQ:PL:SB 1/2:0,18,9,0:27:99:1101,351,291,730,0,730,1095,350,745,1103:0,0,5,22 +chrX 2317257 . T . . END=2317285 GT:DP:GQ:MIN_DP:PL 0/0:35:72:35:0,72,978 +chrX 2317286 . G C, 313.64 . AS_QUALapprox=|321|0;AS_VarDP=28|13|0;BaseQRankSum=1.945;DP=42;MQRankSum=-1.846;QUALapprox=321;RAW_GT_COUNT=0,1,0;RAW_MQandDP=139545,42;ReadPosRankSum=0.126;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:28,13,0:41:99:321,0,672,403,711,1113:8,20,4,9 +chrX 2317287 . T . . END=2317330 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,108,1135 +chrX 2317331 . A C, 1842.06 . AS_QUALapprox=|1856|0;AS_VarDP=0|42|0;DP=43;QUALapprox=1856;RAW_GT_COUNT=0,0,1;RAW_MQandDP=146644,43;VarDP=42 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,42,0:42:99:0|1:2317331_A_C:1856,126,0,1856,126,1856:2317331:0,0,13,29 +chrX 2317332 . G A, 318.64 . AS_QUALapprox=|326|0;AS_VarDP=25|14|0;BaseQRankSum=0.706;DP=43;MQRankSum=-1.697;QUALapprox=326;RAW_GT_COUNT=0,1,0;RAW_MQandDP=146644,43;ReadPosRankSum=-1.260;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:25,14,0:39:99:326,0,643,400,684,1084:7,18,5,9 +chrX 2317333 . C . . END=2317337 GT:DP:GQ:MIN_DP:PL 0/0:40:67:40:0,67,1173 +chrX 2317338 . A G, 1833.06 . AS_QUALapprox=|1847|0;AS_VarDP=0|42|0;DP=43;QUALapprox=1847;RAW_GT_COUNT=0,0,1;RAW_MQandDP=146644,43;VarDP=42 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,42,0:42:99:0|1:2317331_A_C:1847,126,0,1847,126,1847:2317331:0,0,13,29 +chrX 2317339 . C . . END=2317508 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,112,1400 +chrX 2317509 . C A, 934.64 . AS_QUALapprox=|942|0;AS_VarDP=29|26|0;BaseQRankSum=-0.733;DP=57;MQRankSum=-1.020;QUALapprox=942;RAW_GT_COUNT=0,1,0;RAW_MQandDP=203416,57;ReadPosRankSum=0.245;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,26,0:55:99:0|1:2317509_C_A:942,0,1068,1029,1146,2175:2317509:20,9,15,11 +chrX 2317510 . C . . END=2317531 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 2317532 . G A, 873.64 . AS_QUALapprox=|881|0;AS_VarDP=32|24|0;BaseQRankSum=0.216;DP=57;MQRankSum=-1.119;QUALapprox=881;RAW_GT_COUNT=0,1,0;RAW_MQandDP=203416,57;ReadPosRankSum=0.009;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:32,24,0:56:99:0|1:2317509_C_A:881,0,1159,977,1231,2208:2317509:24,8,14,10 +chrX 2317533 . T . . END=2317635 GT:DP:GQ:MIN_DP:PL 0/0:57:87:57:0,87,1558 +chrX 2317636 . AAAG A, 991.60 . AS_QUALapprox=|999|0;AS_VarDP=27|26|0;BaseQRankSum=1.428;DP=55;MQRankSum=0.000;QUALapprox=999;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=1.379;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:27,26,0:53:99:999,0,1026,1080,1104,2185:14,13,15,11 +chrX 2317640 . A . . END=2318002 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,111,1711 +chrX 2318003 . G A, 899.64 . AS_QUALapprox=|907|0;AS_VarDP=22|33|0;BaseQRankSum=-1.471;DP=59;MQRankSum=0.000;QUALapprox=907;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-0.524;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:22,33,0:55:99:907,0,590,973,689,1661:12,10,15,18 +chrX 2318004 . C . . END=2318191 GT:DP:GQ:MIN_DP:PL 0/0:48:29:46:0,29,1271 +chrX 2318192 . GAA G,GAAA, 724.02 . AS_QUALapprox=|504|160|0;AS_VarDP=0|18|12|0;DP=44;QUALapprox=741;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158400,44;VarDP=30 GT:AD:DP:GQ:PL:SB 1/2:0,18,12,0:30:99:741,237,406,581,0,663,804,363,652,952:0,0,17,13 +chrX 2318195 . A . . END=2318541 GT:DP:GQ:MIN_DP:PL 0/0:62:73:62:0,73,1131 +chrX 2318542 . C A, 957.64 . AS_QUALapprox=|965|0;AS_VarDP=33|36|0;BaseQRankSum=0.998;DP=71;MQRankSum=0.000;QUALapprox=965;RAW_GT_COUNT=0,1,0;RAW_MQandDP=255600,71;ReadPosRankSum=-0.282;VarDP=69 GT:AD:DP:GQ:PL:SB 0/1:33,36,0:69:99:965,0,846,1064,953,2017:14,19,14,22 +chrX 2318543 . G . . END=2319212 GT:DP:GQ:MIN_DP:PL 0/0:56:64:56:0,64,936 +chrX 2319213 . T . . END=2319213 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,437 +chrX 2319214 . C . . END=2319215 GT:DP:GQ:MIN_DP:PL 0/0:33:75:33:0,75,1125 +chrX 2319216 . T . . END=2319216 GT:DP:GQ:MIN_DP:PL 0/0:28:10:28:0,10,674 +chrX 2319217 . C . . END=2319223 GT:DP:GQ:MIN_DP:PL 0/0:34:69:34:0,69,1035 +chrX 2319224 . T . . END=2319224 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,635 +chrX 2319225 . C . . END=2319227 GT:DP:GQ:MIN_DP:PL 0/0:37:81:37:0,81,1215 +chrX 2319228 . T . . END=2319228 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,745 +chrX 2319229 . T . . END=2319230 GT:DP:GQ:MIN_DP:PL 0/0:31:38:29:0,38,799 +chrX 2319231 . T . . END=2319231 GT:DP:GQ:MIN_DP:PL 0/0:29:0:29:0,0,710 +chrX 2319232 . C . . END=2319233 GT:DP:GQ:MIN_DP:PL 0/0:36:90:36:0,90,1350 +chrX 2319234 . T . . END=2319234 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,808 +chrX 2319235 . C . . END=2319250 GT:DP:GQ:MIN_DP:PL 0/0:36:35:35:0,35,917 +chrX 2319251 . T . . END=2319251 GT:DP:GQ:MIN_DP:PL 0/0:39:8:39:0,8,987 +chrX 2319252 . C . . END=2319538 GT:DP:GQ:MIN_DP:PL 0/0:46:42:46:0,42,905 +chrX 2319539 . T . . END=2319539 GT:DP:GQ:MIN_DP:PL 0/0:35:11:35:0,11,978 +chrX 2319540 . C . . END=2319540 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,1032 +chrX 2319541 . T . . END=2319541 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,913 +chrX 2319542 . C CA, 597.03 . AS_QUALapprox=|611|0;AS_VarDP=0|30|0;DP=47;QUALapprox=611;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162882,47;VarDP=30 GT:AD:DP:GQ:PL:SB 1/1:0,30,0:30:88:611,88,0,611,88,611:0,0,18,12 +chrX 2319543 . A . . END=2320315 GT:DP:GQ:MIN_DP:PL 0/0:35:36:35:0,36,974 +chrX 2320316 . A . . END=2320316 GT:DP:GQ:MIN_DP:PL 0/0:38:15:38:0,15,932 +chrX 2320317 . T . . END=2320410 GT:DP:GQ:MIN_DP:PL 0/0:41:21:35:0,21,918 +chrX 2320411 . A C, 1300.06 . AS_QUALapprox=|1314|0;AS_VarDP=0|42|0;DP=62;QUALapprox=1314;RAW_GT_COUNT=0,0,1;RAW_MQandDP=218176,62;VarDP=42 GT:AD:DP:GQ:PL:SB 1/1:0,42,0:42:99:1314,126,0,1314,126,1314:0,0,10,32 +chrX 2320412 . A . . END=2320515 GT:DP:GQ:MIN_DP:PL 0/0:22:31:20:0,31,640 +chrX 2320516 . C A, 751.14 . AS_QUALapprox=|765|0;AS_VarDP=1|18|0;BaseQRankSum=-0.288;DP=40;MQRankSum=0.000;QUALapprox=765;RAW_GT_COUNT=0,0,1;RAW_MQandDP=132360,40;ReadPosRankSum=1.553;VarDP=19 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:1,18,0:19:12:0|1:2320516_C_A:765,12,0,768,54,810:2320516:1,0,1,17 +chrX 2320517 . A . . END=2320521 GT:DP:GQ:MIN_DP:PL 0/0:19:29:18:0,29,526 +chrX 2320522 . C T, 751.14 . AS_QUALapprox=|765|0;AS_VarDP=1|18|0;BaseQRankSum=-0.289;DP=40;MQRankSum=0.000;QUALapprox=765;RAW_GT_COUNT=0,0,1;RAW_MQandDP=132360,40;ReadPosRankSum=1.096;VarDP=19 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:1,18,0:19:12:0|1:2320516_C_A:765,12,0,768,54,810:2320516:1,0,1,17 +chrX 2320523 . T . . END=2320530 GT:DP:GQ:MIN_DP:PL 0/0:19:39:19:0,39,585 +chrX 2320531 . A G, 697.64 . AS_QUALapprox=|705|0;AS_VarDP=3|17|0;BaseQRankSum=-0.289;DP=43;MQRankSum=-0.280;QUALapprox=705;RAW_GT_COUNT=0,1,0;RAW_MQandDP=141496,43;ReadPosRankSum=1.790;VarDP=20 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:3,17,0:20:75:0|1:2320516_C_A:705,0,75,714,126,840:2320516:3,0,1,16 +chrX 2320532 . G . . END=2320532 GT:DP:GQ:MIN_DP:PL 0/0:19:36:19:0,36,540 +chrX 2320533 . T C, 655.64 . AS_QUALapprox=|663|0;AS_VarDP=3|16|0;BaseQRankSum=-0.298;DP=33;MQRankSum=-0.289;QUALapprox=663;RAW_GT_COUNT=0,1,0;RAW_MQandDP=105496,33;ReadPosRankSum=2.015;VarDP=19 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:3,16,0:19:78:0|1:2320516_C_A:663,0,78,672,126,798:2320516:3,0,0,16 +chrX 2320534 . G . . END=2320540 GT:DP:GQ:MIN_DP:PL 0/0:19:36:18:0,36,540 +chrX 2320541 . C T, 562.64 . AS_QUALapprox=|570|0;AS_VarDP=6|14|0;BaseQRankSum=2.522;DP=36;MQRankSum=-0.546;QUALapprox=570;RAW_GT_COUNT=0,1,0;RAW_MQandDP=116296,36;ReadPosRankSum=0.464;VarDP=20 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:6,14,0:20:99:0|1:2320516_C_A:570,0,210,588,252,840:2320516:5,1,0,14 +chrX 2320542 . C G, 562.64 . AS_QUALapprox=|570|0;AS_VarDP=6|14|0;BaseQRankSum=2.299;DP=36;MQRankSum=-0.546;QUALapprox=570;RAW_GT_COUNT=0,1,0;RAW_MQandDP=116296,36;ReadPosRankSum=0.578;VarDP=20 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:6,14,0:20:99:0|1:2320516_C_A:570,0,210,588,252,840:2320516:5,1,0,14 +chrX 2320543 . A G, 559.64 . AS_QUALapprox=|567|0;AS_VarDP=7|14|0;BaseQRankSum=1.532;DP=38;MQRankSum=-0.606;QUALapprox=567;RAW_GT_COUNT=0,1,0;RAW_MQandDP=123496,38;ReadPosRankSum=0.372;VarDP=21 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:7,14,0:21:99:0|1:2320516_C_A:567,0,252,588,294,882:2320516:6,1,0,14 +chrX 2320544 . C . . END=2320544 GT:DP:GQ:MIN_DP:PL 0/0:18:45:18:0,45,675 +chrX 2320545 . C T, 556.64 . AS_QUALapprox=|564|0;AS_VarDP=8|14|0;BaseQRankSum=1.066;DP=39;MQRankSum=-0.661;QUALapprox=564;RAW_GT_COUNT=0,1,0;RAW_MQandDP=127096,39;ReadPosRankSum=1.226;VarDP=22 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:8,14,0:22:99:0|1:2320516_C_A:564,0,294,588,336,924:2320516:7,1,0,14 +chrX 2320546 . T . . END=2320550 GT:DP:GQ:MIN_DP:PL 0/0:20:48:20:0,48,720 +chrX 2320551 . T C, 421.64 . AS_QUALapprox=|429|0;AS_VarDP=11|11|0;BaseQRankSum=0.322;DP=39;MQRankSum=-0.909;QUALapprox=429;RAW_GT_COUNT=0,1,0;RAW_MQandDP=127096,39;ReadPosRankSum=0.526;VarDP=22 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:11,11,0:22:99:0|1:2320516_C_A:429,0,429,462,462,924:2320516:9,2,0,11 +chrX 2320552 . T . . END=2320557 GT:DP:GQ:MIN_DP:PL 0/0:21:54:21:0,54,810 +chrX 2320558 . A T, 334.64 . AS_QUALapprox=|342|0;AS_VarDP=12|9|0;BaseQRankSum=1.931;DP=39;MQRankSum=-1.058;QUALapprox=342;RAW_GT_COUNT=0,1,0;RAW_MQandDP=127096,39;ReadPosRankSum=0.036;VarDP=21 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:12,9,0:21:99:0|1:2320516_C_A:342,0,477,378,504,882:2320516:10,2,0,9 +chrX 2320559 . G . . END=2320560 GT:DP:GQ:MIN_DP:PL 0/0:21:54:21:0,54,810 +chrX 2320561 . G A, 331.64 . AS_QUALapprox=|339|0;AS_VarDP=13|9|0;BaseQRankSum=1.203;DP=41;MQRankSum=-1.109;QUALapprox=339;RAW_GT_COUNT=0,1,0;RAW_MQandDP=134296,41;ReadPosRankSum=-1.031;VarDP=22 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:13,9,0:22:99:0|1:2320516_C_A:339,0,519,378,546,924:2320516:11,2,0,9 +chrX 2320562 . C . . END=2320569 GT:DP:GQ:MIN_DP:PL 0/0:22:45:22:0,45,675 +chrX 2320570 . G A, 792.06 . AS_QUALapprox=|806|0;AS_VarDP=0|22|0;DP=43;QUALapprox=806;RAW_GT_COUNT=0,0,1;RAW_MQandDP=141496,43;VarDP=22 GT:AD:DP:GQ:PL:SB 1/1:0,22,0:22:66:806,66,0,806,66,806:0,0,12,10 +chrX 2320571 . C . . END=2320575 GT:DP:GQ:MIN_DP:PL 0/0:21:48:21:0,48,720 +chrX 2320576 . A G, 196.64 . AS_QUALapprox=|204|0;AS_VarDP=16|6|0;BaseQRankSum=1.429;DP=43;MQRankSum=-1.531;QUALapprox=204;RAW_GT_COUNT=0,1,0;RAW_MQandDP=141496,43;ReadPosRankSum=-2.882;VarDP=22 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:16,6,0:22:99:0|1:2320516_C_A:204,0,654,252,672,924:2320516:14,2,0,6 +chrX 2320577 . T . . END=2320585 GT:DP:GQ:MIN_DP:PL 0/0:19:48:19:0,48,720 +chrX 2320586 . G C, 28.64 . AS_QUALapprox=|36|0;AS_VarDP=16|2|0;BaseQRankSum=1.246;DP=40;MQRankSum=-2.652;QUALapprox=36;RAW_GT_COUNT=0,1,0;RAW_MQandDP=131992,40;ReadPosRankSum=-2.038;VarDP=18 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:16,2,0:18:36:0|1:2320516_C_A:36,0,666,84,672,756:2320516:14,2,0,2 +chrX 2320587 . T . . END=2320590 GT:DP:GQ:MIN_DP:PL 0/0:18:48:18:0,48,720 +chrX 2320591 . T C, 28.64 . AS_QUALapprox=|36|0;AS_VarDP=16|2|0;BaseQRankSum=0.877;DP=42;MQRankSum=-2.652;QUALapprox=36;RAW_GT_COUNT=0,1,0;RAW_MQandDP=139192,42;ReadPosRankSum=-2.180;VarDP=18 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:16,2,0:18:36:0|1:2320516_C_A:36,0,666,84,672,756:2320516:14,2,0,2 +chrX 2320592 . G . . END=2321506 GT:DP:GQ:MIN_DP:PL 0/0:57:41:57:0,41,854 +chrX 2321507 . T TG, 536.60 . AS_QUALapprox=|544|0;AS_VarDP=36|22|0;BaseQRankSum=0.120;DP=60;MQRankSum=0.000;QUALapprox=544;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=0.080;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:36,22,0:58:99:544,0,1066,653,1132,1785:19,17,11,11 +chrX 2321508 . G . . END=2321609 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,114,1743 +chrX 2321610 . T C, 1649.06 . AS_QUALapprox=|1663|0;AS_VarDP=0|51|0;DP=55;QUALapprox=1663;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1663,153,0,1663,153,1663:0,0,22,29 +chrX 2321611 . G . . END=2321781 GT:DP:GQ:MIN_DP:PL 0/0:43:89:43:0,89,1167 +chrX 2321782 . G A, 377.64 . AS_QUALapprox=|385|0;AS_VarDP=20|14|0;BaseQRankSum=1.244;DP=38;MQRankSum=0.000;QUALapprox=385;RAW_GT_COUNT=0,1,0;RAW_MQandDP=136800,38;ReadPosRankSum=-2.083;VarDP=34 GT:AD:DP:GQ:PL:SB 0/1:20,14,0:34:99:385,0,543,445,586,1030:12,8,8,6 +chrX 2321783 . G . . END=2321834 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,99,1121 +chrX 2321835 . G C, 1222.06 . AS_QUALapprox=|1236|0;AS_VarDP=1|38|0;BaseQRankSum=-0.116;DP=43;MQRankSum=0.000;QUALapprox=1236;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154800,43;ReadPosRankSum=-0.044;VarDP=39 GT:AD:DP:GQ:PL:SB 1/1:1,38,0:39:82:1236,82,0,1239,113,1271:1,0,20,18 +chrX 2321836 . T . . END=2322163 GT:DP:GQ:MIN_DP:PL 0/0:51:47:51:0,47,916 +chrX 2322164 . T G, 452.64 . AS_QUALapprox=|460|0;AS_VarDP=18|17|0;BaseQRankSum=0.927;DP=35;MQRankSum=0.000;QUALapprox=460;RAW_GT_COUNT=0,1,0;RAW_MQandDP=126000,35;ReadPosRankSum=-0.017;VarDP=35 GT:AD:DP:GQ:PL:SB 0/1:18,17,0:35:99:460,0,491,515,542,1056:6,12,4,13 +chrX 2322165 . C . . END=2322554 GT:DP:GQ:MIN_DP:PL 0/0:54:62:54:0,62,1156 +chrX 2322555 . CA C,AA, 381.60 . AS_QUALapprox=|389|0|0;AS_VarDP=19|22|3|0;BaseQRankSum=-0.201;DP=56;MQRankSum=1.193;QUALapprox=389;RAW_GT_COUNT=0,1,0;RAW_MQandDP=200458,56;ReadPosRankSum=0.427;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:19,22,3,0:44:99:389,0,385,448,360,1484,522,467,1222,1236:9,10,11,14 +chrX 2322557 . A . . END=2322672 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,110,1303 +chrX 2322673 . C T, 896.64 . AS_QUALapprox=|904|0;AS_VarDP=14|32|0;BaseQRankSum=1.454;DP=46;MQRankSum=0.000;QUALapprox=904;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=-0.179;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:14,32,0:46:99:0|1:2322673_C_T:904,0,288,946,385,1330:2322673:7,7,19,13 +chrX 2322674 . G . . END=2322680 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,104,1284 +chrX 2322681 . T TA, 1901.03 . AS_QUALapprox=|1915|0;AS_VarDP=0|50|0;DP=53;QUALapprox=1915;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,50,0:50:99:0|1:2322673_C_T:1915,150,0,1915,150,1915:2322673:0,0,29,21 +chrX 2322682 . A . . END=2322875 GT:DP:GQ:MIN_DP:PL 0/0:56:96:56:0,96,1528 +chrX 2322876 . A G, 1828.06 . AS_QUALapprox=|1842|0;AS_VarDP=0|55|0;DP=56;QUALapprox=1842;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1842,165,0,1842,165,1842:0,0,28,27 +chrX 2322877 . C . . END=2322954 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,107,1524 +chrX 2322955 . G A, 536.64 . AS_QUALapprox=|544|0;AS_VarDP=30|20|0;BaseQRankSum=0.857;DP=51;MQRankSum=0.000;QUALapprox=544;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-0.307;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:30,20,0:50:99:544,0,883,635,943,1577:14,16,16,4 +chrX 2322956 . C . . END=2323066 GT:DP:GQ:MIN_DP:PL 0/0:49:90:49:0,90,1473 +chrX 2323067 . G GCGCCAGC, 2034.03 . AS_QUALapprox=|2048|0;AS_VarDP=0|47|0;DP=51;QUALapprox=2048;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:2048,141,0,2048,141,2049:0,0,21,26 +chrX 2323068 . C . . END=2323220 GT:DP:GQ:MIN_DP:PL 0/0:50:41:50:0,41,1314 +chrX 2323221 . T C, 495.64 . AS_QUALapprox=|503|0;AS_VarDP=20|19|0;BaseQRankSum=0.650;DP=41;MQRankSum=0.000;QUALapprox=503;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147600,41;ReadPosRankSum=0.689;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:20,19,0:39:99:503,0,518,563,575,1138:10,10,10,9 +chrX 2323222 . A . . END=2324056 GT:DP:GQ:MIN_DP:PL 0/0:55:40:55:0,40,1055 +chrX 2324057 . GAAA G,GA, 1839.02 . AS_QUALapprox=|1509|1228|0;AS_VarDP=0|30|19|0;DP=60;QUALapprox=1856;RAW_GT_COUNT=0,0,1;RAW_MQandDP=214525,60;VarDP=49 GT:AD:DP:GQ:PL:SB 1/2:0,30,19,0:49:99:1856,464,347,774,0,628,1591,461,765,1491:0,0,17,32 +chrX 2324061 . A . . END=2324488 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,104,1604 +chrX 2324489 . C T, 506.64 . AS_QUALapprox=|514|0;AS_VarDP=27|20|0;BaseQRankSum=-1.247;DP=50;MQRankSum=0.000;QUALapprox=514;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=-2.562;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:27,20,0:47:99:514,0,777,595,837,1432:16,11,11,9 +chrX 2324490 . G . . END=2324908 GT:DP:GQ:MIN_DP:PL 0/0:56:51:56:0,51,1101 +chrX 2324909 . T C, 2005.06 . AS_QUALapprox=|2019|0;AS_VarDP=0|61|0;DP=62;QUALapprox=2019;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=61 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:2019,183,0,2019,183,2019:0,0,22,39 +chrX 2324910 . A . . END=2324945 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 2324946 . GTT G,GTTT, 1620.02 . AS_QUALapprox=|1104|406|0;AS_VarDP=0|35|22|0;DP=68;QUALapprox=1637;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;VarDP=57 GT:AD:DP:GQ:PL:SB 1/2:0,35,22,0:57:99:1637,533,855,1231,0,1356,1745,774,1346,2013:0,0,21,36 +chrX 2324949 . T . . END=2325850 GT:DP:GQ:MIN_DP:PL 0/0:65:37:60:0,37,1106 +chrX 2325851 . T TTTCTC, 2781.03 . AS_QUALapprox=|2795|0;AS_VarDP=0|64|0;DP=70;QUALapprox=2795;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;VarDP=64 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:2795,192,0,2796,193,2796:0,0,29,35 +chrX 2325852 . T . . END=2326747 GT:DP:GQ:MIN_DP:PL 0/0:72:28:66:0,28,1514 +chrX 2326748 . G T, 556.64 . AS_QUALapprox=|564|0;AS_VarDP=33|22|0;BaseQRankSum=1.791;DP=56;MQRankSum=0.000;QUALapprox=564;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-0.438;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:33,22,0:55:99:564,0,851,662,917,1579:15,18,15,7 +chrX 2326749 . A . . END=2326774 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 2326775 . A C, 680.64 . AS_QUALapprox=|688|0;AS_VarDP=32|26|0;BaseQRankSum=0.902;DP=59;MQRankSum=0.000;QUALapprox=688;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=0.078;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:32,26,0:58:99:688,0,867,784,946,1730:13,19,17,9 +chrX 2326776 . C . . END=2326808 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 2326809 . CT C, 460.60 . AS_QUALapprox=|468|0;AS_VarDP=28|24|0;BaseQRankSum=-2.601;DP=59;MQRankSum=-1.042;QUALapprox=468;RAW_GT_COUNT=0,1,0;RAW_MQandDP=211401,59;ReadPosRankSum=0.542;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:28,24,0:52:99:468,0,570,552,643,1194:10,18,16,8 +chrX 2326811 . T . . END=2327261 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,104,1523 +chrX 2327262 . T C, 777.64 . AS_QUALapprox=|785|0;AS_VarDP=28|28|0;BaseQRankSum=1.216;DP=57;MQRankSum=0.000;QUALapprox=785;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-0.976;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:28,28,0:56:99:785,0,755,869,839,1708:13,15,16,12 +chrX 2327263 . T . . END=2327465 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 2327466 . C T, 1035.64 . AS_QUALapprox=|1043|0;AS_VarDP=34|38|0;BaseQRankSum=-0.480;DP=73;MQRankSum=0.000;QUALapprox=1043;RAW_GT_COUNT=0,1,0;RAW_MQandDP=262800,73;ReadPosRankSum=-1.388;VarDP=72 GT:AD:DP:GQ:PL:SB 0/1:34,38,0:72:99:1043,0,925,1145,1040,2185:21,13,22,16 +chrX 2327467 . C . . END=2327775 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,120,1800 +chrX 2327776 . A G, 934.64 . AS_QUALapprox=|942|0;AS_VarDP=39|34|0;BaseQRankSum=-0.126;DP=78;MQRankSum=0.000;QUALapprox=942;RAW_GT_COUNT=0,1,0;RAW_MQandDP=280800,78;ReadPosRankSum=-0.094;VarDP=73 GT:AD:DP:GQ:PL:SB 0/1:39,34,0:73:99:942,0,1115,1060,1217,2277:19,20,20,14 +chrX 2327777 . T . . END=2327971 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 2327972 . T C, 2220.06 . AS_QUALapprox=|2234|0;AS_VarDP=0|67|0;DP=70;QUALapprox=2234;RAW_GT_COUNT=0,0,1;RAW_MQandDP=247731,70;VarDP=67 GT:AD:DP:GQ:PL:SB 1/1:0,67,0:67:99:2234,201,0,2234,201,2234:0,0,37,30 +chrX 2327973 . G . . END=2328067 GT:DP:GQ:MIN_DP:PL 0/0:56:31:51:0,31,1410 +chrX 2328068 . A . . END=2328068 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1405 +chrX 2328069 . G . . END=2328069 GT:DP:GQ:MIN_DP:PL 0/0:51:20:51:0,20,1446 +chrX 2328070 . A . . END=2328078 GT:DP:GQ:MIN_DP:PL 0/0:59:0:59:0,0,695 +chrX 2328079 . C CAAA,CAAAAAAAAA, 2017.02 . AS_QUALapprox=|1024|1501|0;AS_VarDP=0|15|26|0;DP=64;QUALapprox=2034;RAW_GT_COUNT=0,0,1;RAW_MQandDP=217601,64;VarDP=41 GT:AD:DP:GQ:PL:SB 1/2:0,15,26,0:41:99:2034,1085,1010,639,0,533,1882,1084,638,1851:0,0,26,15 +chrX 2328080 . A . . END=2328090 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 2328091 . G . . END=2328091 GT:DP:GQ:MIN_DP:PL 0/0:54:0:54:0,0,1430 +chrX 2328092 . A . . END=2328269 GT:DP:GQ:MIN_DP:PL 0/0:65:48:65:0,48,1712 +chrX 2328270 . C T, 779.64 . AS_QUALapprox=|787|0;AS_VarDP=28|29|0;BaseQRankSum=0.888;DP=61;MQRankSum=-0.948;QUALapprox=787;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219364,61;ReadPosRankSum=-0.519;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:28,29,0:57:99:787,0,688,870,775,1644:11,17,13,16 +chrX 2328271 . C . . END=2328437 GT:DP:GQ:MIN_DP:PL 0/0:51:32:45:0,32,1176 +chrX 2328438 . T . . END=2328438 GT:DP:GQ:MIN_DP:PL 0/0:53:0:53:0,0,1334 +chrX 2328439 . A . . END=2328442 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,104,1614 +chrX 2328443 . G . . END=2328443 GT:DP:GQ:MIN_DP:PL 0/0:50:8:50:0,8,1232 +chrX 2328444 . G . . END=2328503 GT:DP:GQ:MIN_DP:PL 0/0:50:66:50:0,66,1324 +chrX 2328504 . C G, 866.64 . AS_QUALapprox=|874|0;AS_VarDP=18|32|0;BaseQRankSum=0.852;DP=52;MQRankSum=-1.056;QUALapprox=874;RAW_GT_COUNT=0,1,0;RAW_MQandDP=178419,52;ReadPosRankSum=0.900;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:18,32,0:50:99:874,0,382,927,477,1404:8,10,13,19 +chrX 2328505 . C . . END=2329037 GT:DP:GQ:MIN_DP:PL 0/0:52:65:52:0,65,1339 +chrX 2329038 . T C, 1549.06 . AS_QUALapprox=|1563|0;AS_VarDP=0|48|0;DP=51;QUALapprox=1563;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=48 GT:AD:DP:GQ:PL:SB 1/1:0,48,0:48:99:1563,144,0,1563,144,1563:0,0,25,23 +chrX 2329039 . G . . END=2329347 GT:DP:GQ:MIN_DP:PL 0/0:75:92:75:0,92,1570 +chrX 2329348 . T C, 2104.06 . AS_QUALapprox=|2118|0;AS_VarDP=0|67|0;DP=69;QUALapprox=2118;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=67 GT:AD:DP:GQ:PL:SB 1/1:0,67,0:67:99:2118,200,0,2118,200,2118:0,0,27,40 +chrX 2329349 . A . . END=2329751 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,106,1483 +chrX 2329752 . G C, 632.64 . AS_QUALapprox=|640|0;AS_VarDP=21|24|0;BaseQRankSum=-0.267;DP=47;MQRankSum=0.000;QUALapprox=640;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=0.580;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:21,24,0:45:99:640,0,525,702,597,1299:12,9,12,12 +chrX 2329753 . C . . END=2329788 GT:DP:GQ:MIN_DP:PL 0/0:44:98:44:0,98,1245 +chrX 2329789 . G A, 605.64 . AS_QUALapprox=|613|0;AS_VarDP=19|23|0;BaseQRankSum=-0.360;DP=46;MQRankSum=0.000;QUALapprox=613;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=1.112;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:19,23,0:42:99:613,0,494,670,563,1234:9,10,10,13 +chrX 2329790 . T . . END=2329809 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,111,1665 +chrX 2329810 . A G, 534.64 . AS_QUALapprox=|542|0;AS_VarDP=23|21|0;BaseQRankSum=0.151;DP=47;MQRankSum=0.000;QUALapprox=542;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=-0.329;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:23,21,0:44:99:542,0,618,611,680,1291:11,12,8,13 +chrX 2329811 . G . . END=2330061 GT:DP:GQ:MIN_DP:PL 0/0:48:42:48:0,42,630 +chrX 2330062 . C G, 970.06 . AS_QUALapprox=|984|0;AS_VarDP=0|23|0;DP=26;QUALapprox=984;RAW_GT_COUNT=0,0,1;RAW_MQandDP=89369,26;VarDP=23 GT:AD:DP:GQ:PL:SB 1/1:0,23,0:23:69:984,69,0,984,69,984:0,0,16,7 +chrX 2330063 . A . . END=2330069 GT:DP:GQ:MIN_DP:PL 0/0:21:27:21:0,27,405 +chrX 2330070 . CGGCGGGGG C,CGGG, 824.02 . AS_QUALapprox=|453|745|0;AS_VarDP=0|3|10|0;DP=43;QUALapprox=841;RAW_GT_COUNT=0,0,1;RAW_MQandDP=102791,43;VarDP=13 GT:AD:DP:GQ:PL:SB 1/2:0,3,10,0:13:96:841,424,388,147,0,96,707,422,147,682:0,0,9,4 +chrX 2330076 . G *,A, 390.97 . AS_QUALapprox=|0|720|0;AS_VarDP=0|3|10|0;DP=34;QUALapprox=816;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86946,34;VarDP=13 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|2:0,3,10,0:13:96:0|1:2330076_G_*:816,421,388,144,0,96,692,419,144,670:2330076:0,0,9,4 +chrX 2330078 . G *,A, 390.97 . AS_QUALapprox=|0|720|0;AS_VarDP=0|3|10|0;DP=41;QUALapprox=816;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97822,41;VarDP=13 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|2:0,3,10,0:13:96:0|1:2330076_G_*:816,421,388,144,0,96,692,419,144,670:2330076:0,0,9,4 +chrX 2330079 . G A, 88.64 . AS_QUALapprox=|96|0;AS_VarDP=10|3|0;BaseQRankSum=0.000;DP=41;MQRankSum=-1.643;QUALapprox=96;RAW_GT_COUNT=0,1,0;RAW_MQandDP=97822,41;ReadPosRankSum=-1.103;VarDP=13 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:10,3,0:13:96:0|1:2330079_G_A:96,0,388,126,398,524:2330079:7,3,2,1 +chrX 2330080 . G . . END=2330080 GT:DP:GQ:MIN_DP:PL 0/0:14:24:14:0,24,360 +chrX 2330081 . G A, 88.64 . AS_QUALapprox=|96|0;AS_VarDP=10|3|0;BaseQRankSum=0.730;DP=41;MQRankSum=-1.643;QUALapprox=96;RAW_GT_COUNT=0,1,0;RAW_MQandDP=97822,41;ReadPosRankSum=-0.931;VarDP=13 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:10,3,0:13:96:0|1:2330079_G_A:96,0,388,126,398,524:2330079:7,3,2,1 +chrX 2330082 . G A, 381.64 . AS_QUALapprox=|389|0;AS_VarDP=3|10|0;BaseQRankSum=-0.408;DP=38;MQRankSum=2.008;QUALapprox=389;RAW_GT_COUNT=0,1,0;RAW_MQandDP=83822,38;ReadPosRankSum=0.931;VarDP=13 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:3,10,0:13:96:0|1:2330076_G_*:389,0,96,398,126,524:2330076:2,1,7,3 +chrX 2330083 . G . . END=2330083 GT:DP:GQ:MIN_DP:PL 0/0:13:18:13:0,18,270 +chrX 2330084 . G A, 378.64 . AS_QUALapprox=|386|0;AS_VarDP=4|10|0;BaseQRankSum=-0.955;DP=39;MQRankSum=1.739;QUALapprox=386;RAW_GT_COUNT=0,1,0;RAW_MQandDP=87422,39;ReadPosRankSum=1.602;VarDP=14 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:4,10,0:14:99:0|1:2330076_G_*:386,0,114,398,145,542:2330076:2,2,7,3 +chrX 2330085 . G . . END=2330085 GT:DP:GQ:MIN_DP:PL 0/0:11:27:11:0,27,405 +chrX 2330086 . G A, 316.64 . AS_QUALapprox=|324|0;AS_VarDP=4|8|0;BaseQRankSum=-0.799;DP=38;MQRankSum=0.967;QUALapprox=324;RAW_GT_COUNT=0,1,0;RAW_MQandDP=80447,38;ReadPosRankSum=1.242;VarDP=12 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:4,8,0:12:99:0|1:2330076_G_*:324,0,120,336,145,480:2330076:2,2,6,2 +chrX 2330087 . G . . END=2330090 GT:DP:GQ:MIN_DP:PL 0/0:11:27:11:0,27,327 +chrX 2330091 . G . . END=2330091 GT:DP:GQ:MIN_DP:PL 0/0:11:8:11:0,8,313 +chrX 2330092 . G . . END=2330094 GT:DP:GQ:MIN_DP:PL 0/0:13:36:13:0,36,367 +chrX 2330095 . A . . END=2330095 GT:DP:GQ:MIN_DP:PL 0/0:14:17:14:0,17,347 +chrX 2330096 . G . . END=2330100 GT:DP:GQ:MIN_DP:PL 0/0:16:36:15:0,36,540 +chrX 2330101 . GGAGA G,GGA, 443.02 . AS_QUALapprox=|255|251|0;AS_VarDP=0|7|7|0;DP=54;QUALapprox=460;RAW_GT_COUNT=0,0,1;RAW_MQandDP=120769,54;VarDP=14 GT:AD:DP:GQ:PL:SB 1/2:0,7,7,0:14:99:460,205,227,233,0,209,455,229,237,471:0,0,10,4 +chrX 2330106 . G . . END=2330168 GT:DP:GQ:MIN_DP:PL 0/0:29:45:19:0,45,590 +chrX 2330169 . T A, 808.06 . AS_QUALapprox=|822|0;AS_VarDP=0|28|0;DP=31;QUALapprox=822;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=28 GT:AD:DP:GQ:PL:SB 1/1:0,28,0:28:83:822,83,0,822,83,822:0,0,15,13 +chrX 2330170 . G . . END=2330219 GT:DP:GQ:MIN_DP:PL 0/0:37:47:37:0,47,848 +chrX 2330220 . A AG, 802.60 . AS_QUALapprox=|810|0;AS_VarDP=15|30|0;BaseQRankSum=-1.608;DP=50;MQRankSum=0.000;QUALapprox=810;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=1.060;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:15,30,0:45:99:810,0,363,855,453,1308:6,9,16,14 +chrX 2330221 . G . . END=2330520 GT:DP:GQ:MIN_DP:PL 0/0:55:46:55:0,46,1236 +chrX 2330521 . G GA, 443.60 . AS_QUALapprox=|451|0;AS_VarDP=14|21|0;BaseQRankSum=0.469;DP=48;MQRankSum=1.283;QUALapprox=451;RAW_GT_COUNT=0,1,0;RAW_MQandDP=170009,48;ReadPosRankSum=-1.803;VarDP=35 GT:AD:DP:GQ:PL:SB 0/1:14,21,0:35:99:451,0,273,493,336,829:9,5,11,10 +chrX 2330522 . A . . END=2330555 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,99,1208 +chrX 2330556 . A . . END=2330556 GT:DP:GQ:MIN_DP:PL 0/0:36:19:36:0,19,933 +chrX 2330557 . G . . END=2330687 GT:DP:GQ:MIN_DP:PL 0/0:42:48:42:0,48,1001 +chrX 2330688 . TAGG T, 671.60 . AS_QUALapprox=|679|0;AS_VarDP=24|18|0;BaseQRankSum=-0.382;DP=45;MQRankSum=0.000;QUALapprox=679;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=0.705;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:24,18,0:42:99:679,0,920,751,974,1725:11,13,9,9 +chrX 2330692 . A . . END=2331220 GT:DP:GQ:MIN_DP:PL 0/0:54:69:54:0,69,1176 +chrX 2331221 . C T, 1657.06 . AS_QUALapprox=|1671|0;AS_VarDP=0|53|0;DP=54;QUALapprox=1671;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1671,159,0,1671,159,1671:0,0,27,26 +chrX 2331222 . C . . END=2331435 GT:DP:GQ:MIN_DP:PL 0/0:68:93:68:0,93,1755 +chrX 2331436 . GTTTTTTTTTT G,GTTTTTTTTTTTTTTTT, 719.02 . AS_QUALapprox=|471|232|0;AS_VarDP=2|18|7|0;BaseQRankSum=-0.788;DP=53;MQRankSum=2.294;QUALapprox=736;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176836,53;ReadPosRankSum=-0.185;VarDP=27 GT:AD:DP:GQ:PL:SB 1/2:2,18,7,0:27:99:736,265,430,504,0,744,799,399,679,1019:2,0,7,18 +chrX 2331447 . T . . END=2331464 GT:DP:GQ:MIN_DP:PL 0/0:33:24:31:0,24,900 +chrX 2331465 . G . . END=2331465 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,749 +chrX 2331466 . A . . END=2331502 GT:DP:GQ:MIN_DP:PL 0/0:35:49:35:0,49,833 +chrX 2331503 . C A, 941.64 . AS_QUALapprox=|949|0;AS_VarDP=12|24|0;BaseQRankSum=0.026;DP=37;MQRankSum=-0.574;QUALapprox=949;RAW_GT_COUNT=0,1,0;RAW_MQandDP=118564,37;ReadPosRankSum=0.957;VarDP=36 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:12,24,0:36:99:0|1:2331503_C_A:949,0,428,985,500,1485:2331503:10,2,10,14 +chrX 2331504 . A . . END=2331505 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +chrX 2331506 . A G, 941.64 . AS_QUALapprox=|949|0;AS_VarDP=12|24|0;BaseQRankSum=-0.715;DP=37;MQRankSum=-0.574;QUALapprox=949;RAW_GT_COUNT=0,1,0;RAW_MQandDP=118564,37;ReadPosRankSum=1.113;VarDP=36 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:12,24,0:36:99:0|1:2331503_C_A:949,0,428,985,500,1485:2331503:10,2,10,14 +chrX 2331507 . G . . END=2332371 GT:DP:GQ:MIN_DP:PL 0/0:57:92:57:0,92,1089 +chrX 2332372 . T G, 690.64 . AS_QUALapprox=|698|0;AS_VarDP=29|26|0;BaseQRankSum=-0.152;DP=57;MQRankSum=0.000;QUALapprox=698;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-1.012;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:29,26,0:55:99:698,0,803,785,881,1666:15,14,12,14 +chrX 2332373 . T . . END=2332398 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,117,1619 +chrX 2332399 . T C, 557.64 . AS_QUALapprox=|565|0;AS_VarDP=29|24|0;BaseQRankSum=-1.754;DP=53;MQRankSum=0.000;QUALapprox=565;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=-0.134;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:29,24,0:53:99:565,0,810,652,881,1533:16,13,12,12 +chrX 2332400 . G . . END=2332939 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,119,1663 +chrX 2332940 . G T, 919.64 . AS_QUALapprox=|927|0;AS_VarDP=27|33|0;BaseQRankSum=1.416;DP=63;MQRankSum=0.000;QUALapprox=927;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=-1.092;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:27,33,0:60:99:927,0,672,1008,771,1779:14,13,20,13 +chrX 2332941 . T . . END=2333021 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 2333022 . T C, 697.64 . AS_QUALapprox=|705|0;AS_VarDP=28|28|0;BaseQRankSum=-2.184;DP=60;MQRankSum=0.000;QUALapprox=705;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=0.803;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:28,28,0:56:99:705,0,775,789,859,1648:16,12,15,13 +chrX 2333023 . G . . END=2333228 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 2333229 . G C, 744.64 . AS_QUALapprox=|752|0;AS_VarDP=22|27|0;BaseQRankSum=0.777;DP=50;MQRankSum=0.000;QUALapprox=752;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=0.704;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:22,27,0:49:99:752,0,553,817,634,1451:11,11,10,17 +chrX 2333230 . T . . END=2333333 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 2333334 . T C, 703.64 . AS_QUALapprox=|711|0;AS_VarDP=33|29|0;BaseQRankSum=-2.308;DP=64;MQRankSum=0.000;QUALapprox=711;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=0.466;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:33,29,0:62:99:711,0,941,810,1028,1838:19,14,18,11 +chrX 2333335 . G . . END=2333474 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,112,1800 +chrX 2333475 . T C, 1887.06 . AS_QUALapprox=|1901|0;AS_VarDP=0|59|0;DP=60;QUALapprox=1901;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1901,177,0,1901,177,1901:0,0,32,27 +chrX 2333476 . G . . END=2333815 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 2333816 . A G, 480.64 . AS_QUALapprox=|488|0;AS_VarDP=29|20|0;BaseQRankSum=-0.234;DP=55;MQRankSum=0.000;QUALapprox=488;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=0.153;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:29,20,0:49:99:488,0,822,576,881,1456:10,19,12,8 +chrX 2333817 . C . . END=2333948 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 2333949 . C T, 492.64 . AS_QUALapprox=|500|0;AS_VarDP=25|20|0;BaseQRankSum=-0.043;DP=48;MQRankSum=0.000;QUALapprox=500;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=-0.309;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:25,20,0:45:99:500,0,648,575,708,1283:14,11,13,7 +chrX 2333950 . A . . END=2334159 GT:DP:GQ:MIN_DP:PL 0/0:51:81:51:0,81,1410 +chrX 2334160 . C . . END=2334165 GT:DP:GQ:MIN_DP:PL 0/0:52:0:52:0,0,1167 +chrX 2334166 . T . . END=2334166 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,99,1485 +chrX 2334167 . A . . END=2334167 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1193 +chrX 2334168 . T . . END=2334168 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,99,1485 +chrX 2334169 . G . . END=2334169 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,888 +chrX 2334170 . C CTTTTTTTTTTTT,CTTTTTTTTTTTTT,CTTTTTTTTTTTTTT, 1703.02 . AS_QUALapprox=|1448|1690|1623|0;AS_VarDP=0|4|6|4|0;DP=48;QUALapprox=1720;RAW_GT_COUNT=0,0,1;RAW_MQandDP=153247,48;VarDP=14 GT:AD:DP:GQ:PL:SB 2/3:0,4,6,4,0:14:27:1720,394,272,153,27,30,219,51,0,97,492,284,92,138,370:0,0,5,9 +chrX 2334171 . T . . END=2334181 GT:DP:GQ:MIN_DP:PL 0/0:57:84:57:0,84,1260 +chrX 2334182 . G . . END=2334190 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,0 +chrX 2334191 . T . . END=2334191 GT:DP:GQ:MIN_DP:PL 0/0:53:93:53:0,93,1395 +chrX 2334192 . C . . END=2334192 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,467 +chrX 2334193 . T . . END=2334194 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,99,1485 +chrX 2334195 . A . . END=2334195 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,1006 +chrX 2334196 . C . . END=2334361 GT:DP:GQ:MIN_DP:PL 0/0:42:27:39:0,27,1029 +chrX 2334362 . A G, 1879.06 . AS_QUALapprox=|1893|0;AS_VarDP=0|49|0;DP=52;QUALapprox=1893;RAW_GT_COUNT=0,0,1;RAW_MQandDP=186625,52;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,49,0:49:99:0|1:2334362_A_G:1893,147,0,1893,147,1893:2334362:0,0,25,24 +chrX 2334363 . C . . END=2334369 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 2334370 . C T, 668.64 . AS_QUALapprox=|676|0;AS_VarDP=26|25|0;BaseQRankSum=0.015;DP=55;MQRankSum=-0.981;QUALapprox=676;RAW_GT_COUNT=0,1,0;RAW_MQandDP=197425,55;ReadPosRankSum=0.782;VarDP=51 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,25,0:51:99:0|1:2334362_A_G:676,0,695,754,770,1524:2334362:16,10,13,12 +chrX 2334371 . G . . END=2334555 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 2334556 . T C, 949.64 . AS_QUALapprox=|957|0;AS_VarDP=28|35|0;BaseQRankSum=-0.504;DP=65;MQRankSum=0.000;QUALapprox=957;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=0.118;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:28,35,0:63:99:957,0,729,1041,834,1875:15,13,17,18 +chrX 2334557 . G . . END=2334571 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 2334572 . A G, 885.64 . AS_QUALapprox=|893|0;AS_VarDP=29|34|0;BaseQRankSum=0.267;DP=64;MQRankSum=0.000;QUALapprox=893;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=-0.573;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:29,34,0:63:99:893,0,735,980,836,1816:15,14,17,17 +chrX 2334573 . C . . END=2334597 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 2334598 . T C, 1986.06 . AS_QUALapprox=|2000|0;AS_VarDP=0|59|0;DP=60;QUALapprox=2000;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:2000,177,0,2000,177,2000:0,0,29,30 +chrX 2334599 . A . . END=2335183 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,106,1494 +chrX 2335184 . C CA, 385.60 . AS_QUALapprox=|393|0;AS_VarDP=20|22|0;BaseQRankSum=-1.129;DP=60;MQRankSum=0.000;QUALapprox=393;RAW_GT_COUNT=0,1,0;RAW_MQandDP=215001,60;ReadPosRankSum=0.113;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:20,22,0:42:99:393,0,367,453,432,885:9,11,12,10 +chrX 2335185 . A . . END=2335449 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,111,1731 +chrX 2335450 . G GGT, 712.60 . AS_QUALapprox=|720|0;AS_VarDP=21|24|0;BaseQRankSum=0.253;DP=51;MQRankSum=0.000;QUALapprox=720;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=2.196;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:21,24,0:45:99:720,0,581,783,653,1437:8,13,10,14 +chrX 2335451 . G . . END=2335575 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,110,1613 +chrX 2335576 . G A, 839.64 . AS_QUALapprox=|847|0;AS_VarDP=33|32|0;BaseQRankSum=0.755;DP=67;MQRankSum=0.000;QUALapprox=847;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=-0.046;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:33,32,0:65:99:847,0,818,946,913,1859:15,18,13,19 +chrX 2335577 . A . . END=2336268 GT:DP:GQ:MIN_DP:PL 0/0:61:98:61:0,98,1800 +chrX 2336269 . G A, 459.64 . AS_QUALapprox=|467|0;AS_VarDP=41|20|0;BaseQRankSum=0.546;DP=62;MQRankSum=0.000;QUALapprox=467;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=-2.751;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:41,20,0:61:99:467,0,1152,590,1212,1802:22,19,11,9 +chrX 2336270 . A . . END=2336603 GT:DP:GQ:MIN_DP:PL 0/0:73:54:73:0,54,1573 +chrX 2336604 . G GT, 456.60 . AS_QUALapprox=|464|0;AS_VarDP=28|23|0;BaseQRankSum=-0.424;DP=56;MQRankSum=0.000;QUALapprox=464;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=0.076;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:28,23,0:51:99:464,0,588,549,657,1206:13,15,10,13 +chrX 2336605 . T . . END=2336724 GT:DP:GQ:MIN_DP:PL 0/0:66:65:66:0,65,1800 +chrX 2336725 . A C, 758.64 . AS_QUALapprox=|766|0;AS_VarDP=39|30|0;BaseQRankSum=-0.211;DP=71;MQRankSum=0.000;QUALapprox=766;RAW_GT_COUNT=0,1,0;RAW_MQandDP=255600,71;ReadPosRankSum=0.381;VarDP=69 GT:AD:DP:GQ:PL:SB 0/1:39,30,0:69:99:766,0,1053,883,1144,2026:21,18,12,18 +chrX 2336726 . C . . END=2336847 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 2336848 . TATAG T,TATAGATAG, 2321.02 . AS_QUALapprox=|1349|1042|0;AS_VarDP=0|33|24|0;DP=67;QUALapprox=2338;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=57 GT:AD:DP:GQ:PL:SB 1/2:0,33,24,0:57:99:2338,999,989,1345,0,1296,2349,1048,1363,2400:0,0,25,32 +chrX 2336853 . A . . END=2337100 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,106,1766 +chrX 2337101 . A G, 635.64 . AS_QUALapprox=|643|0;AS_VarDP=43|26|0;BaseQRankSum=1.154;DP=72;MQRankSum=0.808;QUALapprox=643;RAW_GT_COUNT=0,1,0;RAW_MQandDP=256573,72;ReadPosRankSum=0.687;VarDP=69 GT:AD:DP:GQ:PL:SB 0/1:43,26,0:69:99:643,0,1137,771,1215,1986:24,19,12,14 +chrX 2337102 . C . . END=2337211 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,120,1800 +chrX 2337212 . T C, 794.64 . AS_QUALapprox=|802|0;AS_VarDP=36|31|0;BaseQRankSum=-0.217;DP=68;MQRankSum=0.000;QUALapprox=802;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=-1.384;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:36,31,0:67:99:802,0,961,909,1054,1963:19,17,13,18 +chrX 2337213 . A . . END=2337671 GT:DP:GQ:MIN_DP:PL 0/0:61:95:61:0,95,1451 +chrX 2337672 . C T, 716.64 . AS_QUALapprox=|724|0;AS_VarDP=20|25|0;BaseQRankSum=0.845;DP=47;MQRankSum=0.000;QUALapprox=724;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=-0.354;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:20,25,0:45:99:724,0,525,784,600,1384:13,7,6,19 +chrX 2337673 . G . . END=2338003 GT:DP:GQ:MIN_DP:PL 0/0:63:88:63:0,88,1504 +chrX 2338004 . G . . END=2338004 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,1336 +chrX 2338005 . A . . END=2338005 GT:DP:GQ:MIN_DP:PL 0/0:52:72:52:0,72,1569 +chrX 2338006 . CA C,CAA, 517.02 . AS_QUALapprox=|483|118|0;AS_VarDP=8|24|10|0;BaseQRankSum=-0.444;DP=57;MQRankSum=-0.424;QUALapprox=534;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201200,57;ReadPosRankSum=-0.348;VarDP=42 GT:AD:DP:GQ:PL:SB 1/2:8,24,10,0:42:51:534,51,263,416,0,720,621,287,687,911:4,4,20,14 +chrX 2338008 . A . . END=2340940 GT:DP:GQ:MIN_DP:PL 0/0:59:50:59:0,50,873 +chrX 2340941 . C G, 780.64 . AS_QUALapprox=|788|0;AS_VarDP=23|32|0;BaseQRankSum=-0.546;DP=55;MQRankSum=0.000;QUALapprox=788;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=2.048;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:23,32,0:55:99:788,0,561,857,656,1512:8,15,13,19 +chrX 2340942 . G . . END=2341650 GT:DP:GQ:MIN_DP:PL 0/0:55:64:55:0,64,1270 +chrX 2341651 . CTT C,TTT, 381.60 . AS_QUALapprox=|389|0|0;AS_VarDP=22|14|2|0;BaseQRankSum=-1.721;DP=50;MQRankSum=0.906;QUALapprox=389;RAW_GT_COUNT=0,1,0;RAW_MQandDP=179104,50;ReadPosRankSum=1.863;VarDP=38 GT:AD:DP:GQ:PL:SB 0/1:22,14,2,0:38:99:389,0,721,450,576,1311,502,715,1215,1299:15,7,8,8 +chrX 2341654 . T . . END=2341743 GT:DP:GQ:MIN_DP:PL 0/0:41:80:41:0,80,976 +chrX 2341744 . C T,CCCTGATAAGAAATAAAATATTACAAAATGCTT, 2404.03 . AS_QUALapprox=|1264|2418|0;AS_VarDP=0|0|36|0;DP=71;QUALapprox=2418;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;VarDP=36 GT:AD:DP:GQ:PL:SB 2/2:0,0,36,0:36:99:2418,1154,1327,165,130,0,2193,1323,203,2270:0,0,14,22 +chrX 2341745 . C . . END=2341781 GT:DP:GQ:MIN_DP:PL 0/0:89:99:89:0,120,1800 +chrX 2341782 . A . . END=2341786 GT:DP:GQ:MIN_DP:PL 0/0:78:0:78:0,0,1226 +chrX 2341787 . A . . END=2341787 GT:DP:GQ:MIN_DP:PL 0/0:93:99:93:0,120,1800 +chrX 2341788 . T . . END=2341788 GT:DP:GQ:MIN_DP:PL 0/0:80:0:80:0,0,1529 +chrX 2341789 . T . . END=2341789 GT:DP:GQ:MIN_DP:PL 0/0:96:99:96:0,120,1800 +chrX 2341790 . T . . END=2341790 GT:DP:GQ:MIN_DP:PL 0/0:80:0:80:0,0,1568 +chrX 2341791 . A . . END=2341791 GT:DP:GQ:MIN_DP:PL 0/0:95:99:95:0,120,1800 +chrX 2341792 . G . . END=2341792 GT:DP:GQ:MIN_DP:PL 0/0:81:0:81:0,0,1593 +chrX 2341793 . A . . END=2341793 GT:DP:GQ:MIN_DP:PL 0/0:96:99:96:0,120,1800 +chrX 2341794 . A . . END=2341795 GT:DP:GQ:MIN_DP:PL 0/0:81:0:81:0,0,1632 +chrX 2341796 . T . . END=2341797 GT:DP:GQ:MIN_DP:PL 0/0:97:99:97:0,120,1800 +chrX 2341798 . T . . END=2341803 GT:DP:GQ:MIN_DP:PL 0/0:82:0:82:0,0,1607 +chrX 2341804 . T . . END=2341804 GT:DP:GQ:MIN_DP:PL 0/0:97:99:97:0,120,1800 +chrX 2341805 . T . . END=2341807 GT:DP:GQ:MIN_DP:PL 0/0:83:0:83:0,0,1870 +chrX 2341808 . T . . END=2341808 GT:DP:GQ:MIN_DP:PL 0/0:96:99:96:0,120,1800 +chrX 2341809 . T . . END=2341810 GT:DP:GQ:MIN_DP:PL 0/0:82:0:82:0,0,1905 +chrX 2341811 . T . . END=2341812 GT:DP:GQ:MIN_DP:PL 0/0:96:99:96:0,120,1800 +chrX 2341813 . T . . END=2341814 GT:DP:GQ:MIN_DP:PL 0/0:84:0:84:0,0,1939 +chrX 2341815 . T . . END=2341815 GT:DP:GQ:MIN_DP:PL 0/0:93:99:93:0,120,1800 +chrX 2341816 . T . . END=2341819 GT:DP:GQ:MIN_DP:PL 0/0:89:0:89:0,0,2095 +chrX 2341820 . T . . END=2341823 GT:DP:GQ:MIN_DP:PL 0/0:98:99:98:0,120,1800 +chrX 2341824 . A . . END=2341824 GT:DP:GQ:MIN_DP:PL 0/0:92:0:92:0,0,2182 +chrX 2341825 . A . . END=2341825 GT:DP:GQ:MIN_DP:PL 0/0:96:99:96:0,120,1800 +chrX 2341826 . T . . END=2341826 GT:DP:GQ:MIN_DP:PL 0/0:92:0:92:0,0,2352 +chrX 2341827 . G . . END=2341827 GT:DP:GQ:MIN_DP:PL 0/0:94:99:94:0,120,1800 +chrX 2341828 . G . . END=2341830 GT:DP:GQ:MIN_DP:PL 0/0:88:11:88:0,11,2223 +chrX 2341831 . T . . END=2341837 GT:DP:GQ:MIN_DP:PL 0/0:86:29:84:0,29,1800 +chrX 2341838 . C . . END=2341838 GT:DP:GQ:MIN_DP:PL 0/0:83:11:83:0,11,2138 +chrX 2341839 . T . . END=2341889 GT:DP:GQ:MIN_DP:PL 0/0:72:84:72:0,84,1800 +chrX 2341890 . T C, 765.64 . AS_QUALapprox=|773|0;AS_VarDP=26|29|0;BaseQRankSum=0.069;DP=57;MQRankSum=0.000;QUALapprox=773;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-0.017;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:26,29,0:55:99:773,0,699,851,786,1637:13,13,14,15 +chrX 2341891 . A . . END=2342085 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 2342086 . G A, 695.64 . AS_QUALapprox=|703|0;AS_VarDP=32|28|0;BaseQRankSum=0.439;DP=62;MQRankSum=-1.036;QUALapprox=703;RAW_GT_COUNT=0,1,0;RAW_MQandDP=222736,62;ReadPosRankSum=-0.541;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:32,28,0:60:99:703,0,812,799,896,1695:17,15,16,12 +chrX 2342087 . T . . END=2342252 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 2342253 . T C, 2615.06 . AS_QUALapprox=|2629|0;AS_VarDP=0|80|0;DP=84;QUALapprox=2629;RAW_GT_COUNT=0,0,1;RAW_MQandDP=302400,84;VarDP=80 GT:AD:DP:GQ:PL:SB 1/1:0,80,0:80:99:2629,241,0,2629,241,2629:0,0,37,43 +chrX 2342254 . T . . END=2342706 GT:DP:GQ:MIN_DP:PL 0/0:61:92:61:0,92,1364 +chrX 2342707 . T A, 489.64 . AS_QUALapprox=|497|0;AS_VarDP=35|19|0;BaseQRankSum=2.413;DP=57;MQRankSum=0.000;QUALapprox=497;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-0.236;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:35,19,0:54:99:497,0,1001,602,1058,1660:17,18,5,14 +chrX 2342708 . T . . END=2342891 GT:DP:GQ:MIN_DP:PL 0/0:51:87:51:0,87,1250 +chrX 2342892 . C T, 419.64 . AS_QUALapprox=|427|0;AS_VarDP=19|16|0;BaseQRankSum=1.465;DP=35;MQRankSum=0.000;QUALapprox=427;RAW_GT_COUNT=0,1,0;RAW_MQandDP=126000,35;ReadPosRankSum=-0.282;VarDP=35 GT:AD:DP:GQ:PL:SB 0/1:19,16,0:35:99:427,0,491,483,539,1022:10,9,9,7 +chrX 2342893 . G . . END=2343691 GT:DP:GQ:MIN_DP:PL 0/0:52:65:52:0,65,1101 +chrX 2343692 . C T, 924.64 . AS_QUALapprox=|932|0;AS_VarDP=26|34|0;BaseQRankSum=-0.043;DP=60;MQRankSum=0.000;QUALapprox=932;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=0.254;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:26,34,0:60:99:932,0,659,1010,761,1770:11,15,16,18 +chrX 2343693 . C . . END=2344024 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,119,1468 +chrX 2344025 . T C, 1453.06 . AS_QUALapprox=|1467|0;AS_VarDP=0|46|0;DP=49;QUALapprox=1467;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1467,137,0,1467,137,1467:0,0,25,21 +chrX 2344026 . G . . END=2344133 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 2344134 . C T, 1836.06 . AS_QUALapprox=|1850|0;AS_VarDP=0|59|0;DP=61;QUALapprox=1850;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1850,176,0,1850,176,1850:0,0,29,30 +chrX 2344135 . G . . END=2344870 GT:DP:GQ:MIN_DP:PL 0/0:47:22:47:0,22,1194 +chrX 2344871 . G . . END=2344871 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,943 +chrX 2344872 . CATATATATAT C,CATATATAT, 833.02 . AS_QUALapprox=|675|176|0;AS_VarDP=1|17|7|0;DP=45;MQRankSum=0.000;QUALapprox=850;RAW_GT_COUNT=0,0,1;RAW_MQandDP=161209,45;VarDP=25 GT:AD:DP:GQ:PL:SB 1/2:1,17,7,0:25:99:850,175,387,676,0,674,879,331,707,1010:0,1,9,15 +chrX 2344883 . A . . END=2345595 GT:DP:GQ:MIN_DP:PL 0/0:46:28:44:0,28,1007 +chrX 2345596 . A G, 1643.06 . AS_QUALapprox=|1657|0;AS_VarDP=0|45|0;DP=46;QUALapprox=1657;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;VarDP=45 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,45,0:45:99:0|1:2345596_A_G:1657,135,0,1657,135,1657:2345596:0,0,27,18 +chrX 2345597 . A . . END=2345616 GT:DP:GQ:MIN_DP:PL 0/0:46:98:46:0,98,1244 +chrX 2345617 . C T, 586.64 . AS_QUALapprox=|594|0;AS_VarDP=24|23|0;BaseQRankSum=-0.060;DP=48;MQRankSum=0.000;QUALapprox=594;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=1.001;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,23,0:47:99:0|1:2345596_A_G:594,0,628,666,697,1363:2345596:13,11,14,9 +chrX 2345618 . G . . END=2345654 GT:DP:GQ:MIN_DP:PL 0/0:47:77:47:0,77,1281 +chrX 2345655 . CA C,TA, 851.03 . AS_QUALapprox=|865|0|0;AS_VarDP=0|41|0|0;DP=57;QUALapprox=865;RAW_GT_COUNT=0,0,1;RAW_MQandDP=203536,57;VarDP=41 GT:AD:DP:GQ:PL:SB 1/1:0,41,0,0:41:99:865,105,0,1003,130,1968,993,146,1544,1437:0,0,24,17 +chrX 2345657 . A . . END=2346254 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,109,1758 +chrX 2346255 . C CCT, 2703.03 . AS_QUALapprox=|2717|0;AS_VarDP=0|61|0;DP=62;QUALapprox=2717;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=61 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:2717,184,0,2717,184,2717:0,0,24,37 +chrX 2346256 . G . . END=2346652 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,106,1337 +chrX 2346653 . T TTGTTG,TTTGTTG, 2637.03 . AS_QUALapprox=|2651|1045|0;AS_VarDP=0|59|3|0;DP=67;QUALapprox=2651;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:0,59,3,0:62:99:2651,192,0,1769,103,1606,2305,191,1743,2170:0,0,27,35 +chrX 2346654 . T . . END=2346720 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 2346721 . C A, 886.64 . AS_QUALapprox=|894|0;AS_VarDP=28|24|0;BaseQRankSum=-0.268;DP=54;MQRankSum=0.000;QUALapprox=894;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=-0.606;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,24,0:52:99:0|1:2346721_C_A:894,0,1103,978,1175,2153:2346721:13,15,15,9 +chrX 2346722 . C . . END=2346723 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 2346724 . T C, 886.64 . AS_QUALapprox=|894|0;AS_VarDP=28|24|0;BaseQRankSum=-0.220;DP=52;MQRankSum=0.000;QUALapprox=894;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=-0.634;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,24,0:52:99:0|1:2346721_C_A:894,0,1103,978,1175,2153:2346721:13,15,15,9 +chrX 2346725 . G . . END=2346856 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 2346857 . T A, 663.64 . AS_QUALapprox=|671|0;AS_VarDP=36|26|0;BaseQRankSum=-1.374;DP=62;MQRankSum=0.883;QUALapprox=671;RAW_GT_COUNT=0,1,0;RAW_MQandDP=221716,62;ReadPosRankSum=0.863;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:36,26,0:62:99:671,0,1054,780,1132,1912:22,14,12,14 +chrX 2346858 . T . . END=2347427 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,114,1708 +chrX 2347428 . T G, 833.64 . AS_QUALapprox=|841|0;AS_VarDP=36|36|0;BaseQRankSum=-2.515;DP=75;MQRankSum=1.028;QUALapprox=841;RAW_GT_COUNT=0,1,0;RAW_MQandDP=268325,75;ReadPosRankSum=-0.490;VarDP=72 GT:AD:DP:GQ:PL:SB 0/1:36,36,0:72:99:841,0,957,948,1064,2012:17,19,18,18 +chrX 2347429 . C . . END=2347462 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 2347463 . A G, 1940.06 . AS_QUALapprox=|1954|0;AS_VarDP=0|62|0;DP=64;QUALapprox=1954;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226725,64;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:0,62,0:62:99:1954,185,0,1954,185,1954:0,0,32,30 +chrX 2347464 . C . . END=2348440 GT:DP:GQ:MIN_DP:PL 0/0:61:87:61:0,87,1608 +chrX 2348441 . C T, 1019.64 . AS_QUALapprox=|1027|0;AS_VarDP=28|36|0;BaseQRankSum=2.958;DP=65;MQRankSum=0.000;QUALapprox=1027;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=0.521;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:28,36,0:64:99:1027,0,671,1111,779,1890:10,18,16,20 +chrX 2348442 . G . . END=2348691 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 2348692 . AT A, 332.60 . AS_QUALapprox=|340|0;AS_VarDP=33|19|0;BaseQRankSum=-0.829;DP=59;MQRankSum=0.000;QUALapprox=340;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=1.854;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:33,19,0:52:99:0|1:2348692_AT_A:340,0,1101,439,1158,1597:2348692:14,19,8,11 +chrX 2348694 . T . . END=2348697 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 2348698 . T A, 845.64 . AS_QUALapprox=|853|0;AS_VarDP=24|32|0;BaseQRankSum=0.871;DP=57;MQRankSum=0.000;QUALapprox=853;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=0.207;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:24,32,0:56:99:1|0:2348692_AT_A:853,0,683,925,779,1704:2348692:9,15,14,18 +chrX 2348699 . T . . END=2348962 GT:DP:GQ:MIN_DP:PL 0/0:55:86:55:0,86,1351 +chrX 2348963 . G C, 964.64 . AS_QUALapprox=|972|0;AS_VarDP=32|39|0;BaseQRankSum=-0.659;DP=72;MQRankSum=0.000;QUALapprox=972;RAW_GT_COUNT=0,1,0;RAW_MQandDP=259200,72;ReadPosRankSum=1.145;VarDP=71 GT:AD:DP:GQ:PL:SB 0/1:32,39,0:71:99:972,0,774,1068,891,1959:16,16,20,19 +chrX 2348964 . G . . END=2349256 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,115,1335 +chrX 2349257 . A G, 671.64 . AS_QUALapprox=|679|0;AS_VarDP=31|27|0;BaseQRankSum=-1.283;DP=61;MQRankSum=0.000;QUALapprox=679;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=0.834;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:31,27,0:58:99:679,0,863,773,943,1716:17,14,17,10 +chrX 2349258 . T . . END=2349514 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 2349515 . G A, 668.64 . AS_QUALapprox=|676|0;AS_VarDP=25|24|0;BaseQRankSum=1.979;DP=52;MQRankSum=0.000;QUALapprox=676;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=0.150;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,24,0:49:99:0|1:2349515_G_A:676,0,662,752,734,1485:2349515:11,14,12,12 +chrX 2349516 . T . . END=2349516 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,120,1800 +chrX 2349517 . G C, 1874.06 . AS_QUALapprox=|1888|0;AS_VarDP=0|49|0;DP=50;QUALapprox=1888;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,49,0:49:99:0|1:2349515_G_A:1888,147,0,1888,147,1888:2349515:0,0,23,26 +chrX 2349518 . T . . END=2349788 GT:DP:GQ:MIN_DP:PL 0/0:59:72:59:0,72,1620 +chrX 2349789 . T C, 2276.06 . AS_QUALapprox=|2290|0;AS_VarDP=0|53|0;DP=54;QUALapprox=2290;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183551,54;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:2290,160,0,2290,160,2290:0,0,30,23 +chrX 2349790 . C . . END=2349807 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 2349808 . G A, 1195.64 . AS_QUALapprox=|1203|0;AS_VarDP=22|31|0;BaseQRankSum=2.811;DP=56;MQRankSum=3.344;QUALapprox=1203;RAW_GT_COUNT=0,1,0;RAW_MQandDP=188051,56;ReadPosRankSum=-1.529;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,31,0:53:99:0|1:2349808_G_A:1203,0,830,1269,924,2193:2349808:11,11,21,10 +chrX 2349809 . A . . END=2349810 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 2349811 . G C, 1165.64 . AS_QUALapprox=|1173|0;AS_VarDP=22|30|0;BaseQRankSum=-0.690;DP=53;MQRankSum=3.294;QUALapprox=1173;RAW_GT_COUNT=0,1,0;RAW_MQandDP=177251,53;ReadPosRankSum=-1.027;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,30,0:52:99:0|1:2349808_G_A:1173,0,833,1239,924,2163:2349808:11,11,20,10 +chrX 2349812 . C T, 1101.64 . AS_QUALapprox=|1109|0;AS_VarDP=22|28|0;BaseQRankSum=0.713;DP=51;MQRankSum=3.191;QUALapprox=1109;RAW_GT_COUNT=0,1,0;RAW_MQandDP=170051,51;ReadPosRankSum=-1.039;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,28,0:50:99:0|1:2349808_G_A:1109,0,839,1176,924,2099:2349808:11,11,18,10 +chrX 2349813 . G A, 800.64 . AS_QUALapprox=|808|0;AS_VarDP=28|22|0;BaseQRankSum=-0.694;DP=51;MQRankSum=-3.158;QUALapprox=808;RAW_GT_COUNT=0,1,0;RAW_MQandDP=170051,51;ReadPosRankSum=0.824;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:28,22,0:50:99:808,0,1110,893,1176,2068:18,10,11,11 +chrX 2349814 . G . . END=2349816 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,120,1800 +chrX 2349817 . G A, 1021.64 . AS_QUALapprox=|1029|0;AS_VarDP=21|26|0;BaseQRankSum=1.607;DP=49;MQRankSum=3.161;QUALapprox=1029;RAW_GT_COUNT=0,1,0;RAW_MQandDP=160851,49;ReadPosRankSum=-0.514;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,26,0:47:99:0|1:2349808_G_A:1029,0,804,1092,882,1974:2349808:11,10,17,9 +chrX 2349818 . G . . END=2349853 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,106,1305 +chrX 2349854 . G C, 535.64 . AS_QUALapprox=|543|0;AS_VarDP=26|16|0;BaseQRankSum=0.117;DP=44;MQRankSum=-3.612;QUALapprox=543;RAW_GT_COUNT=0,1,0;RAW_MQandDP=142615,44;ReadPosRankSum=-1.712;VarDP=42 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,16,0:42:99:0|1:2349854_G_C:543,0,1012,621,1060,1681:2349854:14,12,7,9 +chrX 2349855 . G . . END=2349867 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,105,1575 +chrX 2349868 . T C, 412.64 . AS_QUALapprox=|420|0;AS_VarDP=28|12|0;BaseQRankSum=0.810;DP=41;MQRankSum=-4.347;QUALapprox=420;RAW_GT_COUNT=0,1,0;RAW_MQandDP=131815,41;ReadPosRankSum=-1.299;VarDP=40 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,12,0:40:99:0|1:2349854_G_C:420,0,1140,504,1176,1680:2349854:13,15,5,7 +chrX 2349869 . T . . END=2349870 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,99,1485 +chrX 2349871 . C T, 409.64 . AS_QUALapprox=|417|0;AS_VarDP=29|12|0;BaseQRankSum=1.478;DP=42;MQRankSum=-4.416;QUALapprox=417;RAW_GT_COUNT=0,1,0;RAW_MQandDP=135415,42;ReadPosRankSum=-1.152;VarDP=41 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,12,0:41:99:0|1:2349854_G_C:417,0,1182,504,1218,1722:2349854:13,16,5,7 +chrX 2349872 . A . . END=2349881 GT:DP:GQ:MIN_DP:PL 0/0:40:81:40:0,81,1215 +chrX 2349882 . CA C, 403.60 . AS_QUALapprox=|411|0;AS_VarDP=31|12|0;BaseQRankSum=1.229;DP=44;MQRankSum=-5.300;QUALapprox=411;RAW_GT_COUNT=0,1,0;RAW_MQandDP=138615,44;ReadPosRankSum=0.157;VarDP=43 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:31,12,0:43:99:0|1:2349854_G_C:411,0,1266,504,1302,1806:2349854:14,17,5,7 +chrX 2349884 . A . . END=2349890 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1316 +chrX 2349891 . T G, 439.64 . AS_QUALapprox=|447|0;AS_VarDP=33|13|0;BaseQRankSum=0.000;DP=47;MQRankSum=-5.909;QUALapprox=447;RAW_GT_COUNT=0,1,0;RAW_MQandDP=149481,47;ReadPosRankSum=-1.106;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:33,13,0:46:99:0|1:2349854_G_C:447,0,1347,546,1386,1932:2349854:15,18,6,7 +chrX 2349892 . A . . END=2349895 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,120,1800 +chrX 2349896 . A G, 394.64 . AS_QUALapprox=|402|0;AS_VarDP=34|12|0;BaseQRankSum=0.216;DP=47;MQRankSum=-6.244;QUALapprox=402;RAW_GT_COUNT=0,1,0;RAW_MQandDP=149481,47;ReadPosRankSum=-1.213;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:34,12,0:46:99:0|1:2349854_G_C:402,0,1371,504,1407,1911:2349854:16,18,5,7 +chrX 2349897 . G . . END=2349907 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 2349908 . A G, 350.64 . AS_QUALapprox=|358|0;AS_VarDP=37|12|0;BaseQRankSum=-0.941;DP=53;MQRankSum=-6.467;QUALapprox=358;RAW_GT_COUNT=0,1,0;RAW_MQandDP=170409,53;ReadPosRankSum=0.023;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:37,12,0:49:99:0|1:2349854_G_C:358,0,1467,469,1502,1971:2349854:18,19,5,7 +chrX 2349909 . G . . END=2349911 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 2349912 . G A, 1835.06 . AS_QUALapprox=|1849|0;AS_VarDP=0|53|0;DP=57;QUALapprox=1849;RAW_GT_COUNT=0,0,1;RAW_MQandDP=184809,57;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1849,159,0,1849,159,1849:0,0,25,28 +chrX 2349913 . C . . END=2349982 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 2349983 . A G, 287.64 . AS_QUALapprox=|295|0;AS_VarDP=40|14|0;BaseQRankSum=-0.056;DP=60;MQRankSum=-5.070;QUALapprox=295;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198925,60;ReadPosRankSum=-0.237;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:40,14,0:54:99:295,0,1133,415,1175,1590:17,23,6,8 +chrX 2349984 . A . . END=2350017 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 2350018 . G A, 1698.06 . AS_QUALapprox=|1712|0;AS_VarDP=0|53|0;DP=59;QUALapprox=1712;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198621,59;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1712,159,0,1712,159,1712:0,0,25,28 +chrX 2350019 . A . . END=2350230 GT:DP:GQ:MIN_DP:PL 0/0:60:94:60:0,94,1513 +chrX 2350231 . G A, 1504.06 . AS_QUALapprox=|1518|0;AS_VarDP=0|47|0;DP=48;QUALapprox=1518;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1518,141,0,1518,141,1518:0,0,26,21 +chrX 2350232 . T . . END=2351067 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,114,1584 +chrX 2351068 . C T, 618.64 . AS_QUALapprox=|626|0;AS_VarDP=29|25|0;BaseQRankSum=-0.739;DP=56;MQRankSum=0.000;QUALapprox=626;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-0.477;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:29,25,0:54:99:626,0,786,712,861,1573:12,17,14,11 +chrX 2351069 . G . . END=2351109 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,118,1552 +chrX 2351110 . C T, 1702.06 . AS_QUALapprox=|1716|0;AS_VarDP=0|52|0;DP=55;QUALapprox=1716;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1716,155,0,1716,155,1716:0,0,22,30 +chrX 2351111 . A . . END=2352015 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,100,1395 +chrX 2352016 . A G, 1721.06 . AS_QUALapprox=|1735|0;AS_VarDP=0|58|0;DP=59;QUALapprox=1735;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=58 GT:AD:DP:GQ:PL:SB 1/1:0,58,0:58:99:1735,172,0,1735,172,1735:0,0,33,25 +chrX 2352017 . G . . END=2352076 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 2352077 . T C, 563.64 . AS_QUALapprox=|571|0;AS_VarDP=28|22|0;BaseQRankSum=0.716;DP=52;MQRankSum=0.000;QUALapprox=571;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=0.684;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:28,22,0:50:99:571,0,734,654,799,1453:11,17,15,7 +chrX 2352078 . G . . END=2352081 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 2352082 . A G, 1868.06 . AS_QUALapprox=|1882|0;AS_VarDP=0|50|0;DP=50;QUALapprox=1882;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1882,150,0,1882,150,1882:0,0,27,23 +chrX 2352083 . A . . END=2352684 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 2352685 . C T, 851.64 . AS_QUALapprox=|859|0;AS_VarDP=25|33|0;BaseQRankSum=-1.426;DP=64;MQRankSum=0.000;QUALapprox=859;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=-2.215;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:25,33,0:58:99:859,0,636,933,734,1667:9,16,19,14 +chrX 2352686 . G . . END=2353257 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 2353258 . C G, 1816.06 . AS_QUALapprox=|1830|0;AS_VarDP=1|56|0;BaseQRankSum=2.621;DP=61;MQRankSum=0.000;QUALapprox=1830;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;ReadPosRankSum=1.155;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:1,56,0:57:99:1830,161,0,1832,168,1839:0,1,31,25 +chrX 2353259 . G . . END=2353540 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 2353541 . G A, 590.64 . AS_QUALapprox=|598|0;AS_VarDP=31|25|0;BaseQRankSum=0.163;DP=57;MQRankSum=0.000;QUALapprox=598;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=1.715;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:31,25,0:56:99:598,0,785,689,859,1548:8,23,10,15 +chrX 2353542 . A . . END=2353583 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,117,1755 +chrX 2353584 . A ATTTT, 571.60 . AS_QUALapprox=|579|0;AS_VarDP=19|16|0;BaseQRankSum=-0.235;DP=48;MQRankSum=0.000;QUALapprox=579;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169684,48;ReadPosRankSum=0.447;VarDP=35 GT:AD:DP:GQ:PL:SB 0/1:19,16,0:35:99:579,0,725,636,773,1409:6,13,6,10 +chrX 2353585 . T . . END=2353600 GT:DP:GQ:MIN_DP:PL 0/0:50:96:50:0,96,1440 +chrX 2353601 . G . . END=2353604 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,953 +chrX 2353605 . T . . END=2353754 GT:DP:GQ:MIN_DP:PL 0/0:46:57:46:0,57,1106 +chrX 2353755 . GT G, 1274.03 . AS_QUALapprox=|1288|0;AS_VarDP=1|43|0;BaseQRankSum=-0.331;DP=53;MQRankSum=0.000;QUALapprox=1288;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;ReadPosRankSum=1.694;VarDP=44 GT:AD:DP:GQ:PL:SB 1/1:1,43,0:44:99:1288,127,0,1289,129,1292:1,0,23,20 +chrX 2353757 . T . . END=2355277 GT:DP:GQ:MIN_DP:PL 0/0:61:83:61:0,83,1414 +chrX 2355278 . G A, 2679.06 . AS_QUALapprox=|2693|0;AS_VarDP=0|61|0;DP=62;QUALapprox=2693;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=61 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,61,0:61:99:0|1:2355278_G_A:2693,184,0,2693,184,2693:2355278:0,0,33,28 +chrX 2355279 . A . . END=2355282 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 2355283 . C G, 2619.06 . AS_QUALapprox=|2633|0;AS_VarDP=0|59|0;DP=60;QUALapprox=2633;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=59 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,59,0:59:99:0|1:2355278_G_A:2633,178,0,2633,178,2633:2355278:0,0,31,28 +chrX 2355284 . G . . END=2355331 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 2355332 . T C, 580.64 . AS_QUALapprox=|588|0;AS_VarDP=29|23|0;BaseQRankSum=-0.715;DP=54;MQRankSum=0.000;QUALapprox=588;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=1.032;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:29,23,0:52:99:588,0,807,675,876,1551:20,9,12,11 +chrX 2355333 . G . . END=2355440 GT:DP:GQ:MIN_DP:PL 0/0:43:70:43:0,70,1062 +chrX 2355441 . C G, 1225.06 . AS_QUALapprox=|1239|0;AS_VarDP=0|28|0;DP=28;QUALapprox=1239;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=28 GT:AD:DP:GQ:PL:SB 1/1:0,28,0:28:84:1239,84,0,1239,84,1239:0,0,15,13 +chrX 2355442 . G . . END=2355443 GT:DP:GQ:MIN_DP:PL 0/0:28:78:28:0,78,1170 +chrX 2355444 . A T, 527.64 . AS_QUALapprox=|535|0;AS_VarDP=14|14|0;BaseQRankSum=-0.929;DP=28;MQRankSum=0.000;QUALapprox=535;RAW_GT_COUNT=0,1,0;RAW_MQandDP=100800,28;ReadPosRankSum=-0.644;VarDP=28 GT:AD:DP:GQ:PL:SB 0/1:14,14,0:28:99:535,0,534,577,576,1153:7,7,8,6 +chrX 2355445 . A . . END=2355445 GT:DP:GQ:MIN_DP:PL 0/0:28:78:28:0,78,1170 +chrX 2355446 . A AGGTTG, 526.60 . AS_QUALapprox=|534|0;AS_VarDP=14|14|0;BaseQRankSum=0.000;DP=28;MQRankSum=0.000;QUALapprox=534;RAW_GT_COUNT=0,1,0;RAW_MQandDP=100800,28;ReadPosRankSum=0.802;VarDP=28 GT:AD:DP:GQ:PL:SB 0/1:14,14,0:28:99:534,0,546,576,588,1164:8,6,7,7 +chrX 2355447 . G . . END=2355499 GT:DP:GQ:MIN_DP:PL 0/0:26:56:26:0,56,855 +chrX 2355500 . G A, 372.64 . AS_QUALapprox=|380|0;AS_VarDP=11|13|0;BaseQRankSum=1.171;DP=25;MQRankSum=-0.836;QUALapprox=380;RAW_GT_COUNT=0,1,0;RAW_MQandDP=86000,25;ReadPosRankSum=-1.277;VarDP=24 GT:AD:DP:GQ:PL:SB 0/1:11,13,0:24:99:380,0,285,413,325,737:5,6,6,7 +chrX 2355501 . A . . END=2355510 GT:DP:GQ:MIN_DP:PL 0/0:21:24:20:0,24,360 +chrX 2355511 . TAAA T, 1.16 . AS_QUALapprox=|8|0;AS_VarDP=0|0|0;BaseQRankSum=0.180;DP=34;MQRankSum=0.253;QUALapprox=8;RAW_GT_COUNT=0,1,0;RAW_MQandDP=107465,34;ReadPosRankSum=-0.792;VarDP=10 GT:AD:DP:GQ:PL:SB 0/1:9,1,0:10:8:8,0,212,35,216,251:5,4,1,0 +chrX 2355515 . A . . END=2355545 GT:DP:GQ:MIN_DP:PL 0/0:20:24:20:0,24,360 +chrX 2355546 . G . . END=2355546 GT:DP:GQ:MIN_DP:PL 0/0:17:0:17:0,0,411 +chrX 2355547 . A . . END=2355547 GT:DP:GQ:MIN_DP:PL 0/0:24:60:24:0,60,900 +chrX 2355548 . C . . END=2355548 GT:DP:GQ:MIN_DP:PL 0/0:20:0:20:0,0,536 +chrX 2355549 . T . . END=2355585 GT:DP:GQ:MIN_DP:PL 0/0:29:63:29:0,63,690 +chrX 2355586 . T C, 246.64 . AS_QUALapprox=|254|0;AS_VarDP=27|12|0;BaseQRankSum=-1.907;DP=41;MQRankSum=0.000;QUALapprox=254;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147600,41;ReadPosRankSum=-0.624;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:27,12,0:39:99:254,0,797,335,833,1168:15,12,7,5 +chrX 2355587 . G . . END=2355795 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,108,1603 +chrX 2355796 . G C, 677.64 . AS_QUALapprox=|685|0;AS_VarDP=23|25|0;BaseQRankSum=0.865;DP=54;MQRankSum=0.000;QUALapprox=685;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=-1.858;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:23,25,0:48:99:685,0,594,754,669,1422:12,11,11,14 +chrX 2355797 . T . . END=2356022 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,100,1220 +chrX 2356023 . G A, 525.64 . AS_QUALapprox=|533|0;AS_VarDP=18|21|0;BaseQRankSum=-0.894;DP=40;MQRankSum=0.000;QUALapprox=533;RAW_GT_COUNT=0,1,0;RAW_MQandDP=140929,40;ReadPosRankSum=0.479;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:18,21,0:39:99:533,0,454,587,517,1103:5,13,12,9 +chrX 2356024 . C . . END=2356065 GT:DP:GQ:MIN_DP:PL 0/0:33:66:33:0,66,990 +chrX 2356066 . C CA,CAA, 634.02 . AS_QUALapprox=|398|575|0;AS_VarDP=0|7|16|0;DP=45;QUALapprox=651;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154929,45;VarDP=23 GT:AD:DP:GQ:PL:SB 1/2:0,7,16,0:23:76:651,326,253,137,0,76,565,313,136,524:0,0,11,12 +chrX 2356067 . A . . END=2356408 GT:DP:GQ:MIN_DP:PL 0/0:57:54:57:0,54,1320 +chrX 2356409 . T C, 970.64 . AS_QUALapprox=|978|0;AS_VarDP=31|36|0;BaseQRankSum=-0.705;DP=69;MQRankSum=0.000;QUALapprox=978;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=0.805;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:31,36,0:67:99:978,0,836,1072,944,2016:17,14,17,19 +chrX 2356410 . C . . END=2356459 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 2356460 . AGAT A, 904.60 . AS_QUALapprox=|912|0;AS_VarDP=32|24|0;BaseQRankSum=-1.505;DP=61;MQRankSum=0.000;QUALapprox=912;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=1.897;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:32,24,0:56:99:912,0,1246,1008,1318,2326:15,17,17,7 +chrX 2356464 . G . . END=2356581 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 2356582 . T C, 404.64 . AS_QUALapprox=|412|0;AS_VarDP=32|16|0;BaseQRankSum=1.042;DP=51;MQRankSum=0.000;QUALapprox=412;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=0.864;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:32,16,0:48:99:412,0,948,508,996,1504:20,12,8,8 +chrX 2356583 . T . . END=2356731 GT:DP:GQ:MIN_DP:PL 0/0:56:76:56:0,76,1428 +chrX 2356732 . G A, 837.64 . AS_QUALapprox=|845|0;AS_VarDP=32|30|0;BaseQRankSum=1.914;DP=64;MQRankSum=0.000;QUALapprox=845;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=0.895;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:32,30,0:62:99:845,0,865,941,956,1897:16,16,13,17 +chrX 2356733 . G . . END=2357306 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,104,1647 +chrX 2357307 . C T, 665.64 . AS_QUALapprox=|673|0;AS_VarDP=27|25|0;BaseQRankSum=-0.044;DP=53;MQRankSum=0.000;QUALapprox=673;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=0.037;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:27,25,0:52:99:673,0,724,754,800,1553:15,12,15,10 +chrX 2357308 . C . . END=2357699 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 2357700 . TAAAA T, 910.60 . AS_QUALapprox=|918|0;AS_VarDP=16|24|0;BaseQRankSum=4.018;DP=52;MQRankSum=0.000;QUALapprox=918;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=1.112;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:16,24,0:40:99:918,0,564,966,637,1603:9,7,14,10 +chrX 2357705 . A . . END=2357858 GT:DP:GQ:MIN_DP:PL 0/0:58:70:58:0,70,1602 +chrX 2357859 . C T, 521.64 . AS_QUALapprox=|529|0;AS_VarDP=35|22|0;BaseQRankSum=1.051;DP=57;MQRankSum=0.000;QUALapprox=529;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-1.123;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:35,22,0:57:99:529,0,900,634,965,1599:11,24,10,12 +chrX 2357860 . G . . END=2357964 GT:DP:GQ:MIN_DP:PL 0/0:48:93:48:0,93,1340 +chrX 2357965 . G A, 706.64 . AS_QUALapprox=|714|0;AS_VarDP=20|25|0;BaseQRankSum=0.755;DP=46;MQRankSum=0.000;QUALapprox=714;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=-0.217;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:20,25,0:45:99:714,0,530,774,605,1379:10,10,13,12 +chrX 2357966 . C . . END=2358361 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 2358362 . C T, 792.64 . AS_QUALapprox=|800|0;AS_VarDP=27|29|0;BaseQRankSum=-0.750;DP=61;MQRankSum=0.000;QUALapprox=800;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-0.254;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:27,29,0:56:99:800,0,750,881,837,1718:15,12,12,17 +chrX 2358363 . G . . END=2358404 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 2358405 . C T, 1884.06 . AS_QUALapprox=|1898|0;AS_VarDP=0|59|0;DP=61;QUALapprox=1898;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1898,176,0,1898,176,1898:0,0,31,28 +chrX 2358406 . A . . END=2358949 GT:DP:GQ:MIN_DP:PL 0/0:57:33:57:0,33,1369 +chrX 2358950 . G GA, 507.60 . AS_QUALapprox=|515|0;AS_VarDP=17|28|0;BaseQRankSum=1.005;DP=64;MQRankSum=0.000;QUALapprox=515;RAW_GT_COUNT=0,1,0;RAW_MQandDP=228400,64;ReadPosRankSum=0.023;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:17,28,0:45:99:515,0,280,566,364,930:9,8,14,14 +chrX 2358951 . A . . END=2359416 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 2359417 . C T, 735.64 . AS_QUALapprox=|743|0;AS_VarDP=27|28|0;BaseQRankSum=-1.165;DP=58;MQRankSum=0.000;QUALapprox=743;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-1.524;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:27,28,0:55:99:743,0,754,824,837,1662:13,14,12,16 +chrX 2359418 . C . . END=2359448 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 2359449 . G A, 834.64 . AS_QUALapprox=|842|0;AS_VarDP=21|31|0;BaseQRankSum=0.687;DP=53;MQRankSum=0.000;QUALapprox=842;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=-0.700;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:21,31,0:52:99:842,0,489,904,582,1486:10,11,12,19 +chrX 2359450 . G . . END=2360229 GT:DP:GQ:MIN_DP:PL 0/0:56:89:56:0,89,1355 +chrX 2360230 . G T, 468.64 . AS_QUALapprox=|476|0;AS_VarDP=29|19|0;BaseQRankSum=-0.015;DP=50;MQRankSum=0.000;QUALapprox=476;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=-1.435;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:29,19,0:48:99:476,0,844,563,901,1464:15,14,11,8 +chrX 2360231 . T . . END=2360310 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,104,1459 +chrX 2360311 . G A, 770.64 . AS_QUALapprox=|778|0;AS_VarDP=31|29|0;BaseQRankSum=1.080;DP=64;MQRankSum=0.000;QUALapprox=778;RAW_GT_COUNT=0,1,0;RAW_MQandDP=227641,64;ReadPosRankSum=-0.126;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:31,29,0:60:99:778,0,807,871,894,1765:17,14,19,10 +chrX 2360312 . T . . END=2360399 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 2360400 . T C, 888.64 . AS_QUALapprox=|896|0;AS_VarDP=25|35|0;BaseQRankSum=0.318;DP=63;MQRankSum=0.000;QUALapprox=896;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=0.330;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:25,35,0:60:99:896,0,584,971,688,1659:5,20,18,17 +chrX 2360401 . G . . END=2360762 GT:DP:GQ:MIN_DP:PL 0/0:51:92:51:0,92,1316 +chrX 2360763 . C T, 688.64 . AS_QUALapprox=|696|0;AS_VarDP=21|25|0;BaseQRankSum=2.324;DP=49;MQRankSum=0.000;QUALapprox=696;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=-0.165;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:21,25,0:46:99:696,0,512,759,587,1346:13,8,13,12 +chrX 2360764 . G . . END=2361372 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,100,1434 +chrX 2361373 . A G, 888.64 . AS_QUALapprox=|896|0;AS_VarDP=25|35|0;BaseQRankSum=-1.412;DP=61;MQRankSum=0.000;QUALapprox=896;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-0.135;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:25,35,0:60:99:896,0,649,972,754,1725:12,13,14,21 +chrX 2361374 . G . . END=2361424 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 2361425 . T C, 942.64 . AS_QUALapprox=|950|0;AS_VarDP=27|35|0;BaseQRankSum=-0.321;DP=63;MQRankSum=0.000;QUALapprox=950;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=1.179;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:27,35,0:62:99:950,0,687,1031,793,1824:15,12,18,17 +chrX 2361426 . T . . END=2362409 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 2362410 . T C, 718.64 . AS_QUALapprox=|726|0;AS_VarDP=25|29|0;BaseQRankSum=-2.228;DP=56;MQRankSum=0.000;QUALapprox=726;RAW_GT_COUNT=0,1,0;RAW_MQandDP=199521,56;ReadPosRankSum=-0.339;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:25,29,0:54:99:726,0,662,801,749,1550:12,13,12,17 +chrX 2362411 . C . . END=2362760 GT:DP:GQ:MIN_DP:PL 0/0:46:74:46:0,74,1007 +chrX 2362761 . G . . END=2362761 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,283 +chrX 2362762 . C . . END=2362859 GT:DP:GQ:MIN_DP:PL 0/0:34:51:34:0,51,760 +chrX 2362860 . A . . END=2362860 GT:DP:GQ:MIN_DP:PL 0/0:21:14:21:0,14,581 +chrX 2362861 . T . . END=2362878 GT:DP:GQ:MIN_DP:PL 0/0:19:28:18:0,28,459 +chrX 2362879 . A . . END=2362879 GT:DP:GQ:MIN_DP:PL 0/0:17:0:17:0,0,383 +chrX 2362880 . T . . END=2362911 GT:DP:GQ:MIN_DP:PL 0/0:18:23:15:0,23,447 +chrX 2362912 . T . . END=2362912 GT:DP:GQ:MIN_DP:PL 0/0:18:19:18:0,19,536 +chrX 2362913 . A . . END=2362941 GT:DP:GQ:MIN_DP:PL 0/0:16:20:14:0,20,432 +chrX 2362942 . G . . END=2362943 GT:DP:GQ:MIN_DP:PL 0/0:17:0:17:0,0,432 +chrX 2362944 . T . . END=2362947 GT:DP:GQ:MIN_DP:PL 0/0:17:39:17:0,39,585 +chrX 2362948 . A . . END=2362948 GT:DP:GQ:MIN_DP:PL 0/0:16:13:16:0,13,456 +chrX 2362949 . T . . END=2362960 GT:DP:GQ:MIN_DP:PL 0/0:15:30:15:0,30,421 +chrX 2362961 . A . . END=2362961 GT:DP:GQ:MIN_DP:PL 0/0:16:19:16:0,19,458 +chrX 2362962 . C . . END=2363003 GT:DP:GQ:MIN_DP:PL 0/0:15:30:13:0,30,372 +chrX 2363004 . A . . END=2363004 GT:DP:GQ:MIN_DP:PL 0/0:19:0:19:0,0,381 +chrX 2363005 . T . . END=2363013 GT:DP:GQ:MIN_DP:PL 0/0:19:32:19:0,32,571 +chrX 2363014 . G . . END=2363014 GT:DP:GQ:MIN_DP:PL 0/0:18:19:18:0,19,516 +chrX 2363015 . C . . END=2363058 GT:DP:GQ:MIN_DP:PL 0/0:21:32:19:0,32,531 +chrX 2363059 . C . . END=2363059 GT:DP:GQ:MIN_DP:PL 0/0:20:0:20:0,0,505 +chrX 2363060 . G . . END=2363135 GT:DP:GQ:MIN_DP:PL 0/0:22:22:19:0,22,519 +chrX 2363136 . G . . END=2363136 GT:DP:GQ:MIN_DP:PL 0/0:20:0:20:0,0,436 +chrX 2363137 . C . . END=2363138 GT:DP:GQ:MIN_DP:PL 0/0:22:28:21:0,28,580 +chrX 2363139 . G . . END=2363142 GT:DP:GQ:MIN_DP:PL 0/0:19:0:19:0,0,446 +chrX 2363143 . T . . END=2363245 GT:DP:GQ:MIN_DP:PL 0/0:19:25:17:0,25,491 +chrX 2363246 . T . . END=2363246 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,729 +chrX 2363247 . T . . END=2363262 GT:DP:GQ:MIN_DP:PL 0/0:32:46:32:0,46,862 +chrX 2363263 . T . . END=2363263 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,516 +chrX 2363264 . G . . END=2363428 GT:DP:GQ:MIN_DP:PL 0/0:50:47:50:0,47,833 +chrX 2363429 . ACT A, 645.60 . AS_QUALapprox=|653|0;AS_VarDP=24|18|0;BaseQRankSum=-0.469;DP=46;MQRankSum=-0.251;QUALapprox=653;RAW_GT_COUNT=0,1,0;RAW_MQandDP=152249,46;ReadPosRankSum=-1.093;VarDP=42 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,18,0:42:99:0|1:2363429_ACT_A:653,0,927,725,981,1706:2363429:13,11,10,8 +chrX 2363432 . G . . END=2363494 GT:DP:GQ:MIN_DP:PL 0/0:38:78:38:0,78,917 +chrX 2363495 . C T, 522.64 . AS_QUALapprox=|530|0;AS_VarDP=19|14|0;BaseQRankSum=0.110;DP=33;MQRankSum=-1.138;QUALapprox=530;RAW_GT_COUNT=0,1,0;RAW_MQandDP=101843,33;ReadPosRankSum=0.857;VarDP=33 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:19,14,0:33:99:0|1:2363429_ACT_A:530,0,756,587,798,1385:2363429:8,11,7,7 +chrX 2363496 . G . . END=2363505 GT:DP:GQ:MIN_DP:PL 0/0:33:77:33:0,77,972 +chrX 2363506 . A C, 519.64 . AS_QUALapprox=|527|0;AS_VarDP=20|14|0;BaseQRankSum=-3.066;DP=34;MQRankSum=-1.217;QUALapprox=527;RAW_GT_COUNT=0,1,0;RAW_MQandDP=105443,34;ReadPosRankSum=0.948;VarDP=34 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:20,14,0:34:99:0|1:2363429_ACT_A:527,0,798,587,840,1427:2363429:8,12,6,8 +chrX 2363507 . T . . END=2363558 GT:DP:GQ:MIN_DP:PL 0/0:35:67:35:0,67,1013 +chrX 2363559 . T C, 340.64 . AS_QUALapprox=|348|0;AS_VarDP=21|11|0;BaseQRankSum=-0.291;DP=32;MQRankSum=-2.451;QUALapprox=348;RAW_GT_COUNT=0,1,0;RAW_MQandDP=97964,32;ReadPosRankSum=0.041;VarDP=32 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,11,0:32:99:0|1:2363429_ACT_A:348,0,754,411,787,1198:2363429:14,7,6,5 +chrX 2363560 . G . . END=2363668 GT:DP:GQ:MIN_DP:PL 0/0:56:86:56:0,86,1304 +chrX 2363669 . A . . END=2363705 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,797 +chrX 2363706 . T TCCATTTTATCACCGTTCTATGGTATCATGCCG, 336.89 . AS_QUALapprox=|360|0;AS_VarDP=18|15|0;BaseQRankSum=-0.193;DP=45;MQRankSum=-3.941;QUALapprox=360;RAW_GT_COUNT=0,1,0;RAW_MQandDP=137414,45;ReadPosRankSum=-1.464;VarDP=33 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:18,15,0:33:99:0|1:2363706_T_TCCATTTTATCACCGTTCTATGGTATCATGCCG:360,0,636,400,713,1301:2363706:7,11,5,5 +chrX 2363707 . C . . END=2363737 GT:DP:GQ:MIN_DP:PL 0/0:45:68:44:0,68,1353 +chrX 2363738 . T . . END=2363738 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,1122 +chrX 2363739 . C . . END=2363981 GT:DP:GQ:MIN_DP:PL 0/0:49:29:49:0,29,1416 +chrX 2363982 . TGGA T, 1087.60 . AS_QUALapprox=|1095|0;AS_VarDP=27|28|0;BaseQRankSum=0.244;DP=58;MQRankSum=0.000;QUALapprox=1095;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-0.278;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:27,28,0:55:99:1095,0,1049,1176,1134,2310:12,15,10,18 +chrX 2363986 . G . . END=2364712 GT:DP:GQ:MIN_DP:PL 0/0:53:89:53:0,89,1321 +chrX 2364713 . TTATC T, 1147.60 . AS_QUALapprox=|1155|0;AS_VarDP=31|30|0;BaseQRankSum=1.865;DP=64;MQRankSum=0.000;QUALapprox=1155;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=0.065;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:31,30,0:61:99:1155,0,1207,1248,1297,2545:16,15,13,17 +chrX 2364718 . T . . END=2364866 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 2364867 . T A, 382.64 . AS_QUALapprox=|390|0;AS_VarDP=36|16|0;BaseQRankSum=1.221;DP=54;MQRankSum=0.000;QUALapprox=390;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=0.893;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:36,16,0:52:99:390,0,1023,498,1071,1569:17,19,9,7 +chrX 2364868 . C . . END=2365017 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 2365018 . A G, 968.64 . AS_QUALapprox=|976|0;AS_VarDP=25|35|0;BaseQRankSum=-1.006;DP=60;MQRankSum=0.000;QUALapprox=976;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=-0.337;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:25,35,0:60:99:976,0,668,1051,774,1825:11,14,22,13 +chrX 2365019 . T . . END=2365359 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,100,1667 +chrX 2365360 . G A, 810.64 . AS_QUALapprox=|818|0;AS_VarDP=21|29|0;BaseQRankSum=0.916;DP=51;MQRankSum=0.000;QUALapprox=818;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-0.108;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:21,29,0:50:99:818,0,528,881,616,1496:10,11,15,14 +chrX 2365361 . A . . END=2368241 GT:DP:GQ:MIN_DP:PL 0/0:57:49:57:0,49,1026 +chrX 2368242 . C CA, 368.60 . AS_QUALapprox=|376|0;AS_VarDP=22|21|0;BaseQRankSum=-0.140;DP=58;MQRankSum=-0.977;QUALapprox=376;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208116,58;ReadPosRankSum=-2.092;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:22,21,0:43:99:376,0,436,442,499,940:12,10,12,9 +chrX 2368243 . A . . END=2369487 GT:DP:GQ:MIN_DP:PL 0/0:59:59:59:0,59,1285 +chrX 2369488 . GT G, 639.60 . AS_QUALapprox=|647|0;AS_VarDP=28|27|0;BaseQRankSum=-1.057;DP=57;MQRankSum=0.000;QUALapprox=647;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-0.363;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:28,27,0:55:99:647,0,647,731,728,1459:19,9,14,13 +chrX 2369490 . T . . END=2369545 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 2369546 . G C, 731.64 . AS_QUALapprox=|739|0;AS_VarDP=26|29|0;BaseQRankSum=0.664;DP=60;MQRankSum=0.000;QUALapprox=739;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=-0.017;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:26,29,0:55:99:739,0,645,817,731,1547:14,12,15,14 +chrX 2369547 . A . . END=2369809 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,104,1563 +chrX 2369810 . AT A, 741.60 . AS_QUALapprox=|749|0;AS_VarDP=28|29|0;BaseQRankSum=0.786;DP=59;MQRankSum=0.000;QUALapprox=749;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=0.846;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:28,29,0:57:99:749,0,718,833,805,1639:14,14,19,10 +chrX 2369812 . T . . END=2370179 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,112,1547 +chrX 2370180 . C CT, 456.60 . AS_QUALapprox=|464|0;AS_VarDP=24|21|0;BaseQRankSum=-0.606;DP=53;MQRankSum=0.000;QUALapprox=464;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190116,53;ReadPosRankSum=-0.410;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:24,21,0:45:99:464,0,550,536,613,1150:10,14,9,12 +chrX 2370181 . T . . END=2370407 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,104,1283 +chrX 2370408 . G C, 384.64 . AS_QUALapprox=|392|0;AS_VarDP=22|16|0;BaseQRankSum=-1.168;DP=39;MQRankSum=0.000;QUALapprox=392;RAW_GT_COUNT=0,1,0;RAW_MQandDP=140400,39;ReadPosRankSum=1.819;VarDP=38 GT:AD:DP:GQ:PL:SB 0/1:22,16,0:38:99:392,0,604,458,652,1110:15,7,6,10 +chrX 2370409 . T . . END=2370589 GT:DP:GQ:MIN_DP:PL 0/0:58:85:58:0,85,1220 +chrX 2370590 . GA G, 155.60 . AS_QUALapprox=|163|0;AS_VarDP=20|10|0;BaseQRankSum=1.980;DP=49;MQRankSum=0.000;QUALapprox=163;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=2.043;VarDP=30 GT:AD:DP:GQ:PL:SB 0/1:20,10,0:30:99:163,0,351,223,381,604:9,11,8,2 +chrX 2370592 . A . . END=2371021 GT:DP:GQ:MIN_DP:PL 0/0:62:96:62:0,96,1440 +chrX 2371022 . T G, 764.64 . AS_QUALapprox=|772|0;AS_VarDP=26|21|0;BaseQRankSum=-0.672;DP=47;MQRankSum=0.000;QUALapprox=772;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=1.670;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,21,0:47:99:0|1:2371022_T_G:772,0,958,850,1021,1871:2371022:12,14,4,17 +chrX 2371023 . G . . END=2371042 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,110,1494 +chrX 2371043 . G T, 799.64 . AS_QUALapprox=|807|0;AS_VarDP=25|22|0;BaseQRankSum=-1.014;DP=48;MQRankSum=0.000;QUALapprox=807;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=0.128;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,22,0:47:99:0|1:2371022_T_G:807,0,923,882,989,1871:2371022:13,12,6,16 +chrX 2371044 . C . . END=2371230 GT:DP:GQ:MIN_DP:PL 0/0:53:56:53:0,56,1072 +chrX 2371231 . TC T, 492.60 . AS_QUALapprox=|500|0;AS_VarDP=20|18|0;BaseQRankSum=0.887;DP=43;MQRankSum=0.000;QUALapprox=500;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154800,43;ReadPosRankSum=-0.790;VarDP=38 GT:AD:DP:GQ:PL:SB 0/1:20,18,0:38:99:500,0,555,560,609,1169:7,13,9,9 +chrX 2371233 . C . . END=2371354 GT:DP:GQ:MIN_DP:PL 0/0:49:78:49:0,78,1226 +chrX 2371355 . C . . END=2371403 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,988 +chrX 2371404 . A ATTACCATAGACCCTCCTTCCG, 939.60 . AS_QUALapprox=|947|0;AS_VarDP=15|25|0;BaseQRankSum=-1.696;DP=50;MQRankSum=0.000;QUALapprox=947;RAW_GT_COUNT=0,1,0;RAW_MQandDP=177489,50;ReadPosRankSum=-1.510;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:15,25,0:40:99:947,0,556,1008,640,1719:8,7,17,8 +chrX 2371405 . T . . END=2371498 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,784 +chrX 2371499 . A C, 8.60 . AS_QUALapprox=|16|0;AS_VarDP=33|7|0;BaseQRankSum=-2.679;DP=55;MQRankSum=0.000;QUALapprox=16;RAW_GT_COUNT=0,1,0;RAW_MQandDP=195489,55;ReadPosRankSum=-1.193;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:33,7,0:40:16:16,0,887,154,998,1531:20,13,2,5 +chrX 2371500 . C . . END=2371526 GT:DP:GQ:MIN_DP:PL 0/0:50:0:50:0,0,952 +chrX 2371527 . CGTTACCATAGTCCGTCCTTCT C, 839.60 . AS_QUALapprox=|847|0;AS_VarDP=26|22|0;BaseQRankSum=-0.090;DP=58;MQRankSum=0.000;QUALapprox=847;RAW_GT_COUNT=0,1,0;RAW_MQandDP=206289,58;ReadPosRankSum=1.233;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:26,22,0:48:99:847,0,993,930,1070,2045:16,10,10,12 +chrX 2371549 . G . . END=2371554 GT:DP:GQ:MIN_DP:PL 0/0:52:0:52:0,0,1169 +chrX 2371555 . A . . END=2371667 GT:DP:GQ:MIN_DP:PL 0/0:46:22:45:0,22,1083 +chrX 2371668 . TCCCTCCTCCTCCCATTATCACCGC T, 555.60 . AS_QUALapprox=|563|0;AS_VarDP=8|14|0;BaseQRankSum=0.404;DP=49;MQRankSum=0.000;QUALapprox=563;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=-0.149;VarDP=22 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:8,14,0:22:99:0|1:2371668_TCCCTCCTCCTCCCATTATCACCGC_T:563,0,285,587,336,923:2371668:4,4,8,6 +chrX 2371690 . C *,A, 292.01 . AS_QUALapprox=|0|843|0;AS_VarDP=0|14|8|0;DP=39;QUALapprox=1403;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140400,39;VarDP=22 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 2|1:0,14,8,0:22:99:1|0:2371668_TCCCTCCTCCTCCCATTATCACCGC_T:1403,333,289,632,0,560,1188,358,630,1161:2371668:0,0,12,10 +chrX 2371693 . C . . END=2372602 GT:DP:GQ:MIN_DP:PL 0/0:60:89:60:0,89,1140 +chrX 2372603 . T C, 578.64 . AS_QUALapprox=|586|0;AS_VarDP=32|21|0;BaseQRankSum=3.065;DP=54;MQRankSum=0.000;QUALapprox=586;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=0.355;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:32,21,0:53:99:0|1:2372603_T_C:586,0,1085,683,1148,1831:2372603:15,17,11,10 +chrX 2372604 . C . . END=2372611 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,105,1575 +chrX 2372612 . GT G, 343.60 . AS_QUALapprox=|351|0;AS_VarDP=17|17|0;BaseQRankSum=-1.911;DP=46;MQRankSum=0.000;QUALapprox=351;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=1.309;VarDP=34 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:17,17,0:34:99:1|0:2372603_T_C:351,0,632,402,683,1085:2372603:9,8,8,9 +chrX 2372614 . T . . END=2372839 GT:DP:GQ:MIN_DP:PL 0/0:57:68:57:0,68,1038 +chrX 2372840 . A G, 826.64 . AS_QUALapprox=|834|0;AS_VarDP=22|31|0;BaseQRankSum=0.235;DP=55;MQRankSum=-0.804;QUALapprox=834;RAW_GT_COUNT=0,1,0;RAW_MQandDP=197316,55;ReadPosRankSum=-1.969;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:22,31,0:53:99:834,0,512,899,604,1503:11,11,24,7 +chrX 2372841 . A . . END=2372893 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 2372894 . C G, 909.64 . AS_QUALapprox=|917|0;AS_VarDP=28|34|0;BaseQRankSum=0.676;DP=65;MQRankSum=0.000;QUALapprox=917;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=1.168;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:28,34,0:62:99:917,0,663,1000,765,1764:16,12,18,16 +chrX 2372895 . A . . END=2373212 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 2373213 . A T, 700.64 . AS_QUALapprox=|708|0;AS_VarDP=35|28|0;BaseQRankSum=-0.138;DP=64;MQRankSum=0.000;QUALapprox=708;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=-0.678;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:35,28,0:63:99:708,0,972,813,1056,1869:19,16,13,15 +chrX 2373214 . T . . END=2373602 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 2373603 . G A, 748.64 . AS_QUALapprox=|756|0;AS_VarDP=32|29|0;BaseQRankSum=-0.284;DP=61;MQRankSum=0.000;QUALapprox=756;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=1.178;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:32,29,0:61:99:756,0,823,851,911,1761:13,19,9,20 +chrX 2373604 . A . . END=2373629 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 2373630 . G A, 784.64 . AS_QUALapprox=|792|0;AS_VarDP=24|31|0;BaseQRankSum=-2.554;DP=57;MQRankSum=0.000;QUALapprox=792;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-0.611;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:24,31,0:55:99:792,0,655,864,748,1611:9,15,11,20 +chrX 2373631 . G . . END=2374096 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,116,1672 +chrX 2374097 . A G, 677.64 . AS_QUALapprox=|685|0;AS_VarDP=27|26|0;BaseQRankSum=-1.585;DP=55;MQRankSum=0.000;QUALapprox=685;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=1.575;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:27,26,0:53:99:685,0,729,766,807,1573:11,16,15,11 +chrX 2374098 . T . . END=2374447 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,106,1517 +chrX 2374448 . T C, 856.64 . AS_QUALapprox=|864|0;AS_VarDP=32|26|0;BaseQRankSum=-0.979;DP=62;MQRankSum=-2.553;QUALapprox=864;RAW_GT_COUNT=0,1,0;RAW_MQandDP=213324,62;ReadPosRankSum=0.626;VarDP=58 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:32,26,0:58:99:0|1:2374448_T_C:864,0,1204,961,1281,2242:2374448:10,22,14,12 +chrX 2374449 . G . . END=2374482 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 2374483 . A C, 651.64 . AS_QUALapprox=|659|0;AS_VarDP=32|18|0;BaseQRankSum=-0.136;DP=50;MQRankSum=-3.086;QUALapprox=659;RAW_GT_COUNT=0,1,0;RAW_MQandDP=170124,50;ReadPosRankSum=1.284;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:32,18,0:50:99:0|1:2374448_T_C:659,0,1289,756,1344,2099:2374448:15,17,9,9 +chrX 2374484 . A . . END=2374503 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 2374504 . C T, 571.64 . AS_QUALapprox=|579|0;AS_VarDP=31|16|0;BaseQRankSum=2.229;DP=47;MQRankSum=-3.230;QUALapprox=579;RAW_GT_COUNT=0,1,0;RAW_MQandDP=159324,47;ReadPosRankSum=-0.581;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:31,16,0:47:99:0|1:2374448_T_C:579,0,1254,672,1302,1974:2374448:14,17,8,8 +chrX 2374505 . G . . END=2374514 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,111,1665 +chrX 2374515 . A G, 493.64 . AS_QUALapprox=|501|0;AS_VarDP=29|14|0;BaseQRankSum=1.629;DP=43;MQRankSum=-3.352;QUALapprox=501;RAW_GT_COUNT=0,1,0;RAW_MQandDP=144924,43;ReadPosRankSum=-1.149;VarDP=43 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,14,0:43:99:0|1:2374448_T_C:501,0,1176,588,1218,1806:2374448:14,15,8,6 +chrX 2374516 . A . . END=2374516 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,111,1665 +chrX 2374517 . TCA T, 448.60 . AS_QUALapprox=|456|0;AS_VarDP=30|13|0;BaseQRankSum=0.160;DP=43;MQRankSum=-3.539;QUALapprox=456;RAW_GT_COUNT=0,1,0;RAW_MQandDP=144924,43;ReadPosRankSum=-1.431;VarDP=43 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:30,13,0:43:99:0|1:2374448_T_C:456,0,1221,546,1260,1806:2374448:14,16,7,6 +chrX 2374520 . C . . END=2374520 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,108,1620 +chrX 2374521 . C T, 409.64 . AS_QUALapprox=|417|0;AS_VarDP=29|12|0;BaseQRankSum=0.685;DP=41;MQRankSum=-3.630;QUALapprox=417;RAW_GT_COUNT=0,1,0;RAW_MQandDP=137724,41;ReadPosRankSum=-1.705;VarDP=41 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,12,0:41:99:0|1:2374448_T_C:417,0,1182,504,1218,1722:2374448:14,15,6,6 +chrX 2374522 . T . . END=2374528 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,99,1485 +chrX 2374529 . G A, 406.64 . AS_QUALapprox=|414|0;AS_VarDP=30|12|0;BaseQRankSum=2.170;DP=42;MQRankSum=-3.157;QUALapprox=414;RAW_GT_COUNT=0,1,0;RAW_MQandDP=139324,42;ReadPosRankSum=-1.755;VarDP=42 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:30,12,0:42:99:0|1:2374448_T_C:414,0,1224,504,1260,1764:2374448:16,14,6,6 +chrX 2374530 . G . . END=2374532 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,102,1530 +chrX 2374533 . G GAC, 406.60 . AS_QUALapprox=|414|0;AS_VarDP=30|12|0;BaseQRankSum=2.388;DP=42;MQRankSum=-3.157;QUALapprox=414;RAW_GT_COUNT=0,1,0;RAW_MQandDP=139324,42;ReadPosRankSum=-2.031;VarDP=42 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:30,12,0:42:99:0|1:2374448_T_C:414,0,1224,504,1260,1764:2374448:16,14,6,6 +chrX 2374534 . TTC T, 409.60 . AS_QUALapprox=|417|0;AS_VarDP=29|12|0;BaseQRankSum=1.693;DP=41;MQRankSum=-3.099;QUALapprox=417;RAW_GT_COUNT=0,1,0;RAW_MQandDP=135724,41;ReadPosRankSum=-2.130;VarDP=41 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,12,0:41:99:0|1:2374448_T_C:417,0,1182,504,1218,1722:2374448:16,13,6,6 +chrX 2374537 . G . . END=2374539 GT:DP:GQ:MIN_DP:PL 0/0:37:78:37:0,78,1170 +chrX 2374540 . G A, 241.64 . AS_QUALapprox=|249|0;AS_VarDP=29|8|0;BaseQRankSum=1.707;DP=37;MQRankSum=-3.384;QUALapprox=249;RAW_GT_COUNT=0,1,0;RAW_MQandDP=121443,37;ReadPosRankSum=-1.867;VarDP=37 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,8,0:37:99:0|1:2374448_T_C:249,0,1194,336,1218,1554:2374448:16,13,2,6 +chrX 2374541 . C . . END=2374543 GT:DP:GQ:MIN_DP:PL 0/0:34:72:34:0,72,1080 +chrX 2374544 . G T, 202.64 . AS_QUALapprox=|210|0;AS_VarDP=28|7|0;BaseQRankSum=1.600;DP=35;MQRankSum=-3.592;QUALapprox=210;RAW_GT_COUNT=0,1,0;RAW_MQandDP=114243,35;ReadPosRankSum=-1.857;VarDP=35 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,7,0:35:99:0|1:2374448_T_C:210,0,1155,294,1176,1470:2374448:15,13,2,5 +chrX 2374545 . C . . END=2374548 GT:DP:GQ:MIN_DP:PL 0/0:34:72:34:0,72,1080 +chrX 2374549 . A C, 199.64 . AS_QUALapprox=|207|0;AS_VarDP=29|7|0;BaseQRankSum=1.576;DP=36;MQRankSum=-3.656;QUALapprox=207;RAW_GT_COUNT=0,1,0;RAW_MQandDP=117843,36;ReadPosRankSum=-2.297;VarDP=36 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,7,0:36:99:0|1:2374448_T_C:207,0,1186,294,1207,1501:2374448:16,13,2,5 +chrX 2374550 . C . . END=2374558 GT:DP:GQ:MIN_DP:PL 0/0:30:66:30:0,66,990 +chrX 2374559 . A T, 0.40 . AS_QUALapprox=|6|0;AS_VarDP=26|2|0;BaseQRankSum=0.968;DP=29;MQRankSum=0.416;QUALapprox=6;RAW_GT_COUNT=0,1,0;RAW_MQandDP=102400,29;ReadPosRankSum=-1.785;VarDP=28 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,2,0:28:6:0|1:2374448_T_C:6,0,1024,84,1030,1114:2374448:15,11,1,1 +chrX 2374560 . G . . END=2374560 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,863 +chrX 2374561 . A . . END=2376275 GT:DP:GQ:MIN_DP:PL 0/0:21:26:17:0,26,522 +chrX 2376276 . A T, 615.06 . AS_QUALapprox=|629|0;AS_VarDP=0|20|0;DP=20;QUALapprox=629;RAW_GT_COUNT=0,0,1;RAW_MQandDP=72000,20;VarDP=20 GT:AD:DP:GQ:PL:SB 1/1:0,20,0:20:60:629,60,0,629,60,629:0,0,9,11 +chrX 2376277 . G . . END=2376375 GT:DP:GQ:MIN_DP:PL 0/0:21:34:18:0,34,522 +chrX 2376376 . T . . END=2376376 GT:DP:GQ:MIN_DP:PL 0/0:21:14:21:0,14,601 +chrX 2376377 . C . . END=2376597 GT:DP:GQ:MIN_DP:PL 0/0:28:41:28:0,41,634 +chrX 2376598 . C T, 875.06 . AS_QUALapprox=|889|0;AS_VarDP=0|27|0;DP=30;QUALapprox=889;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=27 GT:AD:DP:GQ:PL:SB 1/1:0,27,0:27:81:889,81,0,889,81,889:0,0,11,16 +chrX 2376599 . T . . END=2376672 GT:DP:GQ:MIN_DP:PL 0/0:29:52:29:0,52,853 +chrX 2376673 . A . . END=2376673 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,830 +chrX 2376674 . A . . END=2376674 GT:DP:GQ:MIN_DP:PL 0/0:30:78:30:0,78,1170 +chrX 2376675 . C . . END=2376675 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,824 +chrX 2376676 . T . . END=2376678 GT:DP:GQ:MIN_DP:PL 0/0:31:79:31:0,79,1019 +chrX 2376679 . A . . END=2376682 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,785 +chrX 2376683 . C . . END=2376683 GT:DP:GQ:MIN_DP:PL 0/0:29:87:29:0,87,998 +chrX 2376684 . T . . END=2376693 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,669 +chrX 2376694 . A . . END=2376697 GT:DP:GQ:MIN_DP:PL 0/0:34:91:34:0,91,1117 +chrX 2376698 . G . . END=2376698 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,665 +chrX 2376699 . A . . END=2376700 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1082 +chrX 2376701 . A . . END=2376701 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,630 +chrX 2376702 . A . . END=2376703 GT:DP:GQ:MIN_DP:PL 0/0:36:88:36:0,88,1103 +chrX 2376704 . G . . END=2376708 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,596 +chrX 2376709 . T . . END=2376709 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,120,1800 +chrX 2376710 . T . . END=2376711 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,605 +chrX 2376712 . G . . END=2376712 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,120,1800 +chrX 2376713 . A . . END=2376714 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,625 +chrX 2376715 . G . . END=2376720 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,120,1800 +chrX 2376721 . T . . END=2376721 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,506 +chrX 2376722 . A . . END=2376722 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,120,1800 +chrX 2376723 . T . . END=2376723 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,559 +chrX 2376724 . A . . END=2376727 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,120,1800 +chrX 2376728 . G . . END=2376728 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,581 +chrX 2376729 . C . . END=2376948 GT:DP:GQ:MIN_DP:PL 0/0:51:91:51:0,91,1269 +chrX 2376949 . A G, 780.64 . AS_QUALapprox=|788|0;AS_VarDP=16|29|0;BaseQRankSum=-2.092;DP=47;MQRankSum=-1.513;QUALapprox=788;RAW_GT_COUNT=0,1,0;RAW_MQandDP=163998,47;ReadPosRankSum=0.961;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:16,29,0:45:99:788,0,421,836,508,1344:8,8,16,13 +chrX 2376950 . C . . END=2376989 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,105,1319 +chrX 2376990 . T C, 1030.64 . AS_QUALapprox=|1038|0;AS_VarDP=13|28|0;BaseQRankSum=0.324;DP=42;MQRankSum=-1.577;QUALapprox=1038;RAW_GT_COUNT=0,1,0;RAW_MQandDP=145534,42;ReadPosRankSum=0.897;VarDP=41 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:13,28,0:41:99:0|1:2376990_T_C:1038,0,391,1077,475,1552:2376990:10,3,13,15 +chrX 2376991 . A . . END=2376994 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,99,1485 +chrX 2376995 . CA C, 1062.60 . AS_QUALapprox=|1070|0;AS_VarDP=15|30|0;BaseQRankSum=0.881;DP=49;MQRankSum=-1.633;QUALapprox=1070;RAW_GT_COUNT=0,1,0;RAW_MQandDP=170734,49;ReadPosRankSum=1.008;VarDP=45 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:15,30,0:45:99:0|1:2376990_T_C:1070,0,432,1115,523,1638:2376990:11,4,12,18 +chrX 2376997 . A . . END=2377026 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,117,1755 +chrX 2377027 . G A, 1613.06 . AS_QUALapprox=|1627|0;AS_VarDP=0|50|0;DP=50;QUALapprox=1627;RAW_GT_COUNT=0,0,1;RAW_MQandDP=178085,50;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1627,149,0,1627,149,1627:0,0,21,29 +chrX 2377028 . C . . END=2377217 GT:DP:GQ:MIN_DP:PL 0/0:51:80:51:0,80,1430 +chrX 2377218 . G A, 662.64 . AS_QUALapprox=|670|0;AS_VarDP=21|24|0;BaseQRankSum=1.095;DP=49;MQRankSum=0.000;QUALapprox=670;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=1.616;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:21,24,0:45:99:670,0,514,732,586,1318:9,12,11,13 +chrX 2377219 . T . . END=2377490 GT:DP:GQ:MIN_DP:PL 0/0:48:59:48:0,59,1288 +chrX 2377491 . T C, 1885.06 . AS_QUALapprox=|1899|0;AS_VarDP=0|61|0;DP=65;QUALapprox=1899;RAW_GT_COUNT=0,0,1;RAW_MQandDP=233536,65;VarDP=61 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:1899,182,0,1899,182,1899:0,0,33,28 +chrX 2377492 . G . . END=2378017 GT:DP:GQ:MIN_DP:PL 0/0:53:27:42:0,27,1162 +chrX 2378018 . A G, 2030.06 . AS_QUALapprox=|2044|0;AS_VarDP=0|64|0;DP=69;QUALapprox=2044;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=64 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:2044,191,0,2044,191,2044:0,0,40,24 +chrX 2378019 . T . . END=2378308 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 2378309 . C T, 1019.64 . AS_QUALapprox=|1027|0;AS_VarDP=37|39|0;BaseQRankSum=-1.569;DP=78;MQRankSum=0.000;QUALapprox=1027;RAW_GT_COUNT=0,1,0;RAW_MQandDP=280800,78;ReadPosRankSum=0.567;VarDP=76 GT:AD:DP:GQ:PL:SB 0/1:37,39,0:76:99:1027,0,1003,1138,1120,2258:19,18,20,19 +chrX 2378310 . G . . END=2378360 GT:DP:GQ:MIN_DP:PL 0/0:73:99:73:0,120,1800 +chrX 2378361 . C A, 968.64 . AS_QUALapprox=|976|0;AS_VarDP=33|37|0;BaseQRankSum=-0.701;DP=72;MQRankSum=0.000;QUALapprox=976;RAW_GT_COUNT=0,1,0;RAW_MQandDP=259200,72;ReadPosRankSum=0.818;VarDP=70 GT:AD:DP:GQ:PL:SB 0/1:33,37,0:70:99:976,0,847,1075,958,2033:18,15,20,17 +chrX 2378362 . T . . END=2378529 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 2378530 . T G, 850.64 . AS_QUALapprox=|858|0;AS_VarDP=32|31|0;BaseQRankSum=0.715;DP=63;MQRankSum=0.000;QUALapprox=858;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=-1.396;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:32,31,0:63:99:858,0,873,954,966,1920:11,21,7,24 +chrX 2378531 . T . . END=2378721 GT:DP:GQ:MIN_DP:PL 0/0:67:77:67:0,77,1201 +chrX 2378722 . G A, 521.64 . AS_QUALapprox=|529|0;AS_VarDP=21|19|0;BaseQRankSum=0.964;DP=42;MQRankSum=0.000;QUALapprox=529;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151200,42;ReadPosRankSum=-0.962;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:21,19,0:40:99:529,0,580,592,637,1229:10,11,7,12 +chrX 2378723 . T . . END=2378924 GT:DP:GQ:MIN_DP:PL 0/0:45:73:45:0,73,1171 +chrX 2378925 . A G, 940.64 . AS_QUALapprox=|948|0;AS_VarDP=24|34|0;BaseQRankSum=0.060;DP=58;MQRankSum=0.000;QUALapprox=948;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=0.197;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:24,34,0:58:99:948,0,590,1020,693,1712:12,12,21,13 +chrX 2378926 . C . . END=2379349 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 2379350 . T C, 709.64 . AS_QUALapprox=|717|0;AS_VarDP=27|30|0;BaseQRankSum=-1.051;DP=59;MQRankSum=0.000;QUALapprox=717;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-0.232;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:27,30,0:57:99:717,0,698,798,787,1585:10,17,15,15 +chrX 2379351 . G . . END=2379594 GT:DP:GQ:MIN_DP:PL 0/0:56:35:55:0,35,1489 +chrX 2379595 . G GTTT,GTTTT, 416.60 . AS_QUALapprox=|424|329|0;AS_VarDP=24|6|1|0;BaseQRankSum=-0.735;DP=54;MQRankSum=0.000;QUALapprox=424;RAW_GT_COUNT=0,1,0;RAW_MQandDP=189889,54;ReadPosRankSum=-0.142;VarDP=31 GT:AD:DP:GQ:PL:SB 0/1:24,6,1,0:31:95:424,0,801,95,805,899,324,850,944,1132:12,12,1,6 +chrX 2379596 . T . . END=2379607 GT:DP:GQ:MIN_DP:PL 0/0:48:87:48:0,87,1305 +chrX 2379608 . T G, 581.64 . AS_QUALapprox=|589|0;AS_VarDP=23|25|0;BaseQRankSum=0.087;DP=50;MQRankSum=1.084;QUALapprox=589;RAW_GT_COUNT=0,1,0;RAW_MQandDP=175489,50;ReadPosRankSum=1.064;VarDP=48 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,25,0:48:99:0|1:2379608_T_G:589,0,768,658,841,1498:2379608:8,15,13,12 +chrX 2379609 . T . . END=2379631 GT:DP:GQ:MIN_DP:PL 0/0:35:67:35:0,67,1041 +chrX 2379632 . G C, 405.64 . AS_QUALapprox=|413|0;AS_VarDP=18|15|0;BaseQRankSum=-0.044;DP=34;MQRankSum=0.000;QUALapprox=413;RAW_GT_COUNT=0,1,0;RAW_MQandDP=119889,34;ReadPosRankSum=-0.271;VarDP=33 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:18,15,0:33:99:1|0:2379608_T_G:413,0,645,466,690,1156:2379608:9,9,4,11 +chrX 2379633 . T . . END=2379651 GT:DP:GQ:MIN_DP:PL 0/0:41:50:41:0,50,968 +chrX 2379652 . A . . END=2379652 GT:DP:GQ:MIN_DP:PL 0/0:35:17:35:0,17,949 +chrX 2379653 . G . . END=2379765 GT:DP:GQ:MIN_DP:PL 0/0:38:50:38:0,50,988 +chrX 2379766 . A G, 521.64 . AS_QUALapprox=|529|0;AS_VarDP=17|20|0;BaseQRankSum=-1.895;DP=39;MQRankSum=0.000;QUALapprox=529;RAW_GT_COUNT=0,1,0;RAW_MQandDP=140400,39;ReadPosRankSum=0.290;VarDP=37 GT:AD:DP:GQ:PL:SB 0/1:17,20,0:37:99:529,0,479,580,539,1119:8,9,9,11 +chrX 2379767 . T . . END=2380090 GT:DP:GQ:MIN_DP:PL 0/0:49:95:49:0,95,1250 +chrX 2380091 . C T, 501.64 . AS_QUALapprox=|509|0;AS_VarDP=32|20|0;BaseQRankSum=0.660;DP=55;MQRankSum=-1.225;QUALapprox=509;RAW_GT_COUNT=0,1,0;RAW_MQandDP=196420,55;ReadPosRankSum=0.188;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:32,20,0:52:99:509,0,871,605,931,1536:23,9,8,12 +chrX 2380092 . C . . END=2380298 GT:DP:GQ:MIN_DP:PL 0/0:37:21:35:0,21,855 +chrX 2380299 . T . . END=2380301 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,872 +chrX 2380302 . A . . END=2380683 GT:DP:GQ:MIN_DP:PL 0/0:56:55:56:0,55,1260 +chrX 2380684 . C T, 1286.06 . AS_QUALapprox=|1300|0;AS_VarDP=0|39|0;DP=41;QUALapprox=1300;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147600,41;VarDP=39 GT:AD:DP:GQ:PL:SB 1/1:0,39,0:39:99:1300,117,0,1300,117,1300:0,0,19,20 +chrX 2380685 . A . . END=2380927 GT:DP:GQ:MIN_DP:PL 0/0:54:90:54:0,90,1186 +chrX 2380928 . G A, 641.64 . AS_QUALapprox=|649|0;AS_VarDP=35|28|0;BaseQRankSum=-2.547;DP=64;MQRankSum=0.926;QUALapprox=649;RAW_GT_COUNT=0,1,0;RAW_MQandDP=229609,64;ReadPosRankSum=-0.408;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:35,28,0:63:99:649,0,977,754,1061,1815:19,16,12,16 +chrX 2380929 . A . . END=2381792 GT:DP:GQ:MIN_DP:PL 0/0:59:58:59:0,58,1147 +chrX 2381793 . C . . END=2381793 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,1083 +chrX 2381794 . A . . END=2381795 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,99,1430 +chrX 2381796 . C . . END=2381796 GT:DP:GQ:MIN_DP:PL 0/0:43:10:43:0,10,1146 +chrX 2381797 . CAAAA C,CAAAAA, 551.02 . AS_QUALapprox=|408|151|0;AS_VarDP=0|12|9|0;DP=55;QUALapprox=568;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190611,55;VarDP=21 GT:AD:DP:GQ:PL:SB 1/2:0,12,9,0:21:99:568,160,443,435,0,417,609,338,456,755:0,0,10,11 +chrX 2381802 . A . . END=2382199 GT:DP:GQ:MIN_DP:PL 0/0:57:82:57:0,82,1158 +chrX 2382200 . C A, 1917.06 . AS_QUALapprox=|1931|0;AS_VarDP=0|57|0;DP=57;QUALapprox=1931;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1931,171,0,1931,171,1931:0,0,23,34 +chrX 2382201 . A . . END=2382527 GT:DP:GQ:MIN_DP:PL 0/0:66:34:61:0,34,1765 +chrX 2382528 . C . . END=2382529 GT:DP:GQ:MIN_DP:PL 0/0:74:0:74:0,0,1323 +chrX 2382530 . A . . END=2382548 GT:DP:GQ:MIN_DP:PL 0/0:87:55:87:0,55,1800 +chrX 2382549 . T . . END=2382549 GT:DP:GQ:MIN_DP:PL 0/0:88:0:88:0,0,2143 +chrX 2382550 . C . . END=2382554 GT:DP:GQ:MIN_DP:PL 0/0:87:52:87:0,52,1800 +chrX 2382555 . C . . END=2382555 GT:DP:GQ:MIN_DP:PL 0/0:87:0:87:0,0,2238 +chrX 2382556 . C . . END=2382563 GT:DP:GQ:MIN_DP:PL 0/0:95:59:95:0,59,1800 +chrX 2382564 . T . . END=2382564 GT:DP:GQ:MIN_DP:PL 0/0:86:0:86:0,0,2131 +chrX 2382565 . C . . END=2382566 GT:DP:GQ:MIN_DP:PL 0/0:97:99:97:0,120,1800 +chrX 2382567 . T . . END=2382567 GT:DP:GQ:MIN_DP:PL 0/0:91:0:91:0,0,2236 +chrX 2382568 . C . . END=2382569 GT:DP:GQ:MIN_DP:PL 0/0:100:99:100:0,120,1800 +chrX 2382570 . T . . END=2382570 GT:DP:GQ:MIN_DP:PL 0/0:87:0:87:0,0,2037 +chrX 2382571 . C . . END=2382572 GT:DP:GQ:MIN_DP:PL 0/0:104:99:104:0,120,1800 +chrX 2382573 . T . . END=2382573 GT:DP:GQ:MIN_DP:PL 0/0:97:0:97:0,0,2176 +chrX 2382574 . C . . END=2382575 GT:DP:GQ:MIN_DP:PL 0/0:103:99:103:0,120,1800 +chrX 2382576 . C . . END=2382576 GT:DP:GQ:MIN_DP:PL 0/0:100:0:100:0,0,2539 +chrX 2382577 . C . . END=2382581 GT:DP:GQ:MIN_DP:PL 0/0:112:99:112:0,120,1800 +chrX 2382582 . C . . END=2382582 GT:DP:GQ:MIN_DP:PL 0/0:105:0:105:0,0,2395 +chrX 2382583 . C . . END=2382584 GT:DP:GQ:MIN_DP:PL 0/0:116:99:116:0,120,1800 +chrX 2382585 . T . . END=2382585 GT:DP:GQ:MIN_DP:PL 0/0:112:0:112:0,0,2359 +chrX 2382586 . C . . END=2382602 GT:DP:GQ:MIN_DP:PL 0/0:131:58:131:0,58,1800 +chrX 2382603 . C . . END=2382603 GT:DP:GQ:MIN_DP:PL 0/0:122:0:122:0,0,2748 +chrX 2382604 . C . . END=2382608 GT:DP:GQ:MIN_DP:PL 0/0:136:26:123:0,26,1800 +chrX 2382609 . C . . END=2382609 GT:DP:GQ:MIN_DP:PL 0/0:116:0:116:0,0,2818 +chrX 2382610 . C . . END=2382611 GT:DP:GQ:MIN_DP:PL 0/0:142:99:142:0,120,1800 +chrX 2382612 . T . . END=2382612 GT:DP:GQ:MIN_DP:PL 0/0:124:0:124:0,0,2544 +chrX 2382613 . C . . END=2382617 GT:DP:GQ:MIN_DP:PL 0/0:143:99:143:0,120,1800 +chrX 2382618 . C . . END=2382618 GT:DP:GQ:MIN_DP:PL 0/0:118:0:118:0,0,2241 +chrX 2382619 . C . . END=2382620 GT:DP:GQ:MIN_DP:PL 0/0:144:99:144:0,120,1800 +chrX 2382621 . C . . END=2382621 GT:DP:GQ:MIN_DP:PL 0/0:114:0:114:0,0,2419 +chrX 2382622 . C . . END=2382626 GT:DP:GQ:MIN_DP:PL 0/0:142:96:142:0,96,1800 +chrX 2382627 . T . . END=2382627 GT:DP:GQ:MIN_DP:PL 0/0:114:0:114:0,0,2337 +chrX 2382628 . C . . END=2382638 GT:DP:GQ:MIN_DP:PL 0/0:144:28:124:0,28,1800 +chrX 2382639 . C . . END=2382639 GT:DP:GQ:MIN_DP:PL 0/0:116:0:116:0,0,2112 +chrX 2382640 . C . . END=2382644 GT:DP:GQ:MIN_DP:PL 0/0:152:72:152:0,72,1800 +chrX 2382645 . C . . END=2382645 GT:DP:GQ:MIN_DP:PL 0/0:121:0:121:0,0,2615 +chrX 2382646 . C . . END=2382653 GT:DP:GQ:MIN_DP:PL 0/0:154:99:154:0,120,1800 +chrX 2382654 . C . . END=2382654 GT:DP:GQ:MIN_DP:PL 0/0:122:0:122:0,0,2501 +chrX 2382655 . C . . END=2382656 GT:DP:GQ:MIN_DP:PL 0/0:158:99:158:0,120,1800 +chrX 2382657 . C . . END=2382657 GT:DP:GQ:MIN_DP:PL 0/0:122:0:122:0,0,2659 +chrX 2382658 . C . . END=2382677 GT:DP:GQ:MIN_DP:PL 0/0:145:72:145:0,72,1800 +chrX 2382678 . C . . END=2382678 GT:DP:GQ:MIN_DP:PL 0/0:110:0:110:0,0,2491 +chrX 2382679 . C . . END=2382680 GT:DP:GQ:MIN_DP:PL 0/0:140:99:140:0,120,1800 +chrX 2382681 . T . . END=2382681 GT:DP:GQ:MIN_DP:PL 0/0:119:0:119:0,0,2780 +chrX 2382682 . C . . END=2382683 GT:DP:GQ:MIN_DP:PL 0/0:135:99:135:0,120,1800 +chrX 2382684 . C . . END=2382684 GT:DP:GQ:MIN_DP:PL 0/0:111:0:111:0,0,2712 +chrX 2382685 . C . . END=2382689 GT:DP:GQ:MIN_DP:PL 0/0:131:99:131:0,120,1800 +chrX 2382690 . T . . END=2382690 GT:DP:GQ:MIN_DP:PL 0/0:117:0:117:0,0,2902 +chrX 2382691 . C . . END=2382692 GT:DP:GQ:MIN_DP:PL 0/0:127:99:127:0,120,1800 +chrX 2382693 . C . . END=2382693 GT:DP:GQ:MIN_DP:PL 0/0:106:0:106:0,0,2521 +chrX 2382694 . C . . END=2382695 GT:DP:GQ:MIN_DP:PL 0/0:124:99:124:0,120,1800 +chrX 2382696 . T . . END=2382696 GT:DP:GQ:MIN_DP:PL 0/0:112:9:112:0,9,2936 +chrX 2382697 . C . . END=2382701 GT:DP:GQ:MIN_DP:PL 0/0:111:99:111:0,120,1800 +chrX 2382702 . C . . END=2382702 GT:DP:GQ:MIN_DP:PL 0/0:93:0:93:0,0,2268 +chrX 2382703 . C . . END=2382707 GT:DP:GQ:MIN_DP:PL 0/0:108:26:98:0,26,1800 +chrX 2382708 . C . . END=2382708 GT:DP:GQ:MIN_DP:PL 0/0:95:0:95:0,0,2227 +chrX 2382709 . C . . END=2382710 GT:DP:GQ:MIN_DP:PL 0/0:106:99:106:0,120,1800 +chrX 2382711 . T . . END=2382711 GT:DP:GQ:MIN_DP:PL 0/0:98:0:98:0,0,1994 +chrX 2382712 . C . . END=2382716 GT:DP:GQ:MIN_DP:PL 0/0:94:99:94:0,120,1800 +chrX 2382717 . C . . END=2382717 GT:DP:GQ:MIN_DP:PL 0/0:80:0:80:0,0,2084 +chrX 2382718 . C . . END=2382719 GT:DP:GQ:MIN_DP:PL 0/0:88:99:88:0,120,1800 +chrX 2382720 . C . . END=2382720 GT:DP:GQ:MIN_DP:PL 0/0:82:0:82:0,0,1567 +chrX 2382721 . C . . END=2382722 GT:DP:GQ:MIN_DP:PL 0/0:87:99:87:0,114,1800 +chrX 2382723 . T . . END=2382723 GT:DP:GQ:MIN_DP:PL 0/0:78:0:78:0,0,2002 +chrX 2382724 . C . . END=2382728 GT:DP:GQ:MIN_DP:PL 0/0:74:83:74:0,83,1800 +chrX 2382729 . C . . END=2382729 GT:DP:GQ:MIN_DP:PL 0/0:69:0:69:0,0,1771 +chrX 2382730 . C . . END=2382734 GT:DP:GQ:MIN_DP:PL 0/0:69:85:69:0,85,1800 +chrX 2382735 . T . . END=2382735 GT:DP:GQ:MIN_DP:PL 0/0:65:0:65:0,0,1415 +chrX 2382736 . C . . END=2382737 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 2382738 . T . . END=2382738 GT:DP:GQ:MIN_DP:PL 0/0:63:15:63:0,15,1701 +chrX 2382739 . C T, 426.64 . AS_QUALapprox=|434|0;AS_VarDP=24|17|0;BaseQRankSum=1.227;DP=51;MQRankSum=-0.177;QUALapprox=434;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165548,51;ReadPosRankSum=-1.549;VarDP=41 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,17,0:41:99:0|1:2382739_C_T:434,0,570,503,621,1124:2382739:9,15,5,12 +chrX 2382740 . G . . END=2382740 GT:DP:GQ:MIN_DP:PL 0/0:48:47:48:0,47,1191 +chrX 2382741 . C . . END=2382741 GT:DP:GQ:MIN_DP:PL 0/0:53:0:53:0,0,1335 +chrX 2382742 . C . . END=2382745 GT:DP:GQ:MIN_DP:PL 0/0:58:51:58:0,51,1534 +chrX 2382746 . A . . END=2382746 GT:DP:GQ:MIN_DP:PL 0/0:59:0:59:0,0,1494 +chrX 2382747 . T . . END=2382753 GT:DP:GQ:MIN_DP:PL 0/0:57:32:56:0,32,1633 +chrX 2382754 . T . . END=2382754 GT:DP:GQ:MIN_DP:PL 0/0:55:0:55:0,0,978 +chrX 2382755 . A . . END=2382761 GT:DP:GQ:MIN_DP:PL 0/0:57:61:57:0,61,1653 +chrX 2382762 . T . . END=2382762 GT:DP:GQ:MIN_DP:PL 0/0:52:0:52:0,0,1240 +chrX 2382763 . C . . END=2382766 GT:DP:GQ:MIN_DP:PL 0/0:50:31:50:0,31,1379 +chrX 2382767 . A . . END=2382767 GT:DP:GQ:MIN_DP:PL 0/0:50:0:50:0,0,1232 +chrX 2382768 . T . . END=2382785 GT:DP:GQ:MIN_DP:PL 0/0:50:49:50:0,49,1379 +chrX 2382786 . T . . END=2382786 GT:DP:GQ:MIN_DP:PL 0/0:48:5:48:0,5,1300 +chrX 2382787 . C . . END=2382793 GT:DP:GQ:MIN_DP:PL 0/0:49:47:49:0,47,1355 +chrX 2382794 . A . . END=2382794 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,1295 +chrX 2382795 . T . . END=2382800 GT:DP:GQ:MIN_DP:PL 0/0:48:71:48:0,71,1343 +chrX 2382801 . C . . END=2382801 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,1192 +chrX 2382802 . C . . END=2382803 GT:DP:GQ:MIN_DP:PL 0/0:48:75:48:0,75,1500 +chrX 2382804 . T . . END=2382804 GT:DP:GQ:MIN_DP:PL 0/0:45:6:45:0,6,1215 +chrX 2382805 . C . . END=2382807 GT:DP:GQ:MIN_DP:PL 0/0:45:66:45:0,66,1405 +chrX 2382808 . C . . END=2382809 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,710 +chrX 2382810 . T . . END=2382810 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,111,1665 +chrX 2382811 . C . . END=2382811 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,1196 +chrX 2382812 . A . . END=2382830 GT:DP:GQ:MIN_DP:PL 0/0:44:28:43:0,28,1246 +chrX 2382831 . T . . END=2382831 GT:DP:GQ:MIN_DP:PL 0/0:44:13:44:0,13,1160 +chrX 2382832 . C . . END=2382838 GT:DP:GQ:MIN_DP:PL 0/0:42:39:41:0,39,1157 +chrX 2382839 . G . . END=2382839 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,645 +chrX 2382840 . C . . END=2382849 GT:DP:GQ:MIN_DP:PL 0/0:41:26:38:0,26,1121 +chrX 2382850 . T . . END=2382851 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,748 +chrX 2382852 . T . . END=2382867 GT:DP:GQ:MIN_DP:PL 0/0:37:27:36:0,27,1027 +chrX 2382868 . T . . END=2382868 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,964 +chrX 2382869 . A . . END=2382927 GT:DP:GQ:MIN_DP:PL 0/0:43:43:43:0,43,1056 +chrX 2382928 . G . . END=2382928 GT:DP:GQ:MIN_DP:PL 0/0:36:15:36:0,15,904 +chrX 2382929 . A . . END=2382977 GT:DP:GQ:MIN_DP:PL 0/0:36:45:34:0,45,750 +chrX 2382978 . C CCAT, 845.60 . AS_QUALapprox=|853|0;AS_VarDP=12|23|0;BaseQRankSum=1.251;DP=43;MQRankSum=-0.662;QUALapprox=853;RAW_GT_COUNT=0,1,0;RAW_MQandDP=153801,43;ReadPosRankSum=-0.191;VarDP=35 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:12,23,0:35:99:0|1:2382978_C_CCAT:853,0,425,889,493,1382:2382978:9,3,14,9 +chrX 2382979 . C . . END=2382983 GT:DP:GQ:MIN_DP:PL 0/0:36:90:36:0,90,1350 +chrX 2382984 . T TCAG, 406.60 . AS_QUALapprox=|414|0;AS_VarDP=23|12|0;BaseQRankSum=0.417;DP=40;MQRankSum=0.783;QUALapprox=414;RAW_GT_COUNT=0,1,0;RAW_MQandDP=143001,40;ReadPosRankSum=0.417;VarDP=35 GT:AD:DP:GQ:PL:SB 0/1:23,12,0:35:99:414,0,853,483,889,1372:14,9,9,3 +chrX 2382985 . C . . END=2382986 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,99,1485 +chrX 2382987 . G T, 833.64 . AS_QUALapprox=|841|0;AS_VarDP=16|23|0;BaseQRankSum=1.844;DP=41;MQRankSum=-0.782;QUALapprox=841;RAW_GT_COUNT=0,1,0;RAW_MQandDP=146601,41;ReadPosRankSum=0.751;VarDP=39 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:16,23,0:39:99:0|1:2382978_C_CCAT:841,0,562,889,630,1519:2382978:11,5,14,9 +chrX 2382988 . C . . END=2383070 GT:DP:GQ:MIN_DP:PL 0/0:41:69:41:0,69,1031 +chrX 2383071 . T G, 542.64 . AS_QUALapprox=|550|0;AS_VarDP=25|20|0;BaseQRankSum=0.856;DP=47;MQRankSum=0.000;QUALapprox=550;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=-1.520;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:25,20,0:45:99:550,0,698,625,758,1383:12,13,11,9 +chrX 2383072 . C . . END=2383261 GT:DP:GQ:MIN_DP:PL 0/0:52:23:52:0,23,1349 +chrX 2383262 . G . . END=2383262 GT:DP:GQ:MIN_DP:PL 0/0:47:12:47:0,12,1224 +chrX 2383263 . C . . END=2384358 GT:DP:GQ:MIN_DP:PL 0/0:57:57:54:0,57,1200 +chrX 2384359 . C T, 871.64 . AS_QUALapprox=|879|0;AS_VarDP=27|34|0;BaseQRankSum=-1.534;DP=63;MQRankSum=0.000;QUALapprox=879;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=-0.007;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:27,34,0:61:99:879,0,726,960,827,1787:10,17,18,16 +chrX 2384360 . T . . END=2384758 GT:DP:GQ:MIN_DP:PL 0/0:57:41:57:0,41,645 +chrX 2384759 . T . . END=2384760 GT:DP:GQ:MIN_DP:PL 0/0:25:0:25:0,0,511 +chrX 2384761 . G . . END=2384761 GT:DP:GQ:MIN_DP:PL 0/0:26:63:26:0,63,945 +chrX 2384762 . T . . END=2384762 GT:DP:GQ:MIN_DP:PL 0/0:26:0:26:0,0,397 +chrX 2384763 . G . . END=2384766 GT:DP:GQ:MIN_DP:PL 0/0:29:72:29:0,72,1080 +chrX 2384767 . T . . END=2384767 GT:DP:GQ:MIN_DP:PL 0/0:23:0:23:0,0,304 +chrX 2384768 . G . . END=2384773 GT:DP:GQ:MIN_DP:PL 0/0:25:53:25:0,53,763 +chrX 2384774 . AG A, 200.60 . AS_QUALapprox=|208|0;AS_VarDP=8|10|0;BaseQRankSum=1.682;DP=22;MQRankSum=0.000;QUALapprox=208;RAW_GT_COUNT=0,1,0;RAW_MQandDP=79200,22;ReadPosRankSum=0.133;VarDP=18 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:8,10,0:18:99:0|1:2384774_AG_A:208,0,187,232,216,448:2384774:6,2,8,2 +chrX 2384776 . G . . END=2384949 GT:DP:GQ:MIN_DP:PL 0/0:25:48:20:0,48,519 +chrX 2384950 . A T, 561.64 . AS_QUALapprox=|569|0;AS_VarDP=23|21|0;BaseQRankSum=1.489;DP=47;MQRankSum=0.000;QUALapprox=569;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=0.059;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:23,21,0:44:99:569,0,560,637,623,1260:12,11,15,6 +chrX 2384951 . A . . END=2385107 GT:DP:GQ:MIN_DP:PL 0/0:62:94:62:0,94,1428 +chrX 2385108 . A ATG,ATGTGTG, 391.60 . AS_QUALapprox=|0|399|0;AS_VarDP=31|0|11|0;BaseQRankSum=0.102;DP=58;MQRankSum=-1.625;QUALapprox=399;RAW_GT_COUNT=0,1,0;RAW_MQandDP=206681,58;ReadPosRankSum=1.517;VarDP=42 GT:AD:DP:GQ:PL:SB 0/2:31,0,11,0:42:99:399,403,1517,0,1049,1103,464,1507,1111,1582:16,15,7,4 +chrX 2385109 . T . . END=2385109 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 2385110 . A G,ATGTG,ATGTGTGTG, 1596.06 . AS_QUALapprox=|899|1116|359|0;AS_VarDP=0|15|18|0|0;DP=59;QUALapprox=1613;RAW_GT_COUNT=0,0,1;RAW_MQandDP=210281,59;VarDP=33 GT:AD:DP:GQ:PL:SB 1/2:0,15,18,0,0:33:99:1613,714,980,579,0,497,1284,702,485,1254,1361,707,558,1270,1343:0,0,17,16 +chrX 2385111 . T . . END=2385137 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,105,1390 +chrX 2385138 . A ATG, 628.60 . AS_QUALapprox=|636|0;AS_VarDP=25|19|0;BaseQRankSum=-0.101;DP=49;MQRankSum=-1.608;QUALapprox=636;RAW_GT_COUNT=0,1,0;RAW_MQandDP=174281,49;ReadPosRankSum=-0.913;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:25,19,0:44:99:636,0,907,711,964,1675:11,14,11,8 +chrX 2385139 . T . . END=2385585 GT:DP:GQ:MIN_DP:PL 0/0:56:73:56:0,73,1419 +chrX 2385586 . G A, 777.64 . AS_QUALapprox=|785|0;AS_VarDP=28|28|0;BaseQRankSum=3.097;DP=58;MQRankSum=0.000;QUALapprox=785;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-0.287;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:28,28,0:56:99:785,0,655,868,739,1607:15,13,12,16 +chrX 2385587 . G . . END=2386021 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 2386022 . T G, 567.64 . AS_QUALapprox=|575|0;AS_VarDP=28|22|0;BaseQRankSum=-0.230;DP=51;MQRankSum=0.000;QUALapprox=575;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=0.714;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:28,22,0:50:99:575,0,753,659,820,1478:11,17,9,13 +chrX 2386023 . G . . END=2386155 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,101,1549 +chrX 2386156 . ATTATTTATTTAT A,ATTATTTATTTATTTAT, 1235.02 . AS_QUALapprox=|726|558|0;AS_VarDP=0|18|13|0;DP=50;QUALapprox=1252;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=31 GT:AD:DP:GQ:PL:SB 1/2:0,18,13,0:31:99:1252,526,699,732,0,694,1271,649,747,1378:0,0,18,13 +chrX 2386169 . T . . END=2386345 GT:DP:GQ:MIN_DP:PL 0/0:47:37:47:0,37,1285 +chrX 2386346 . G A, 660.64 . AS_QUALapprox=|668|0;AS_VarDP=33|27|0;BaseQRankSum=-0.410;DP=63;MQRankSum=0.938;QUALapprox=668;RAW_GT_COUNT=0,1,0;RAW_MQandDP=225601,63;ReadPosRankSum=0.617;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:33,27,0:60:99:668,0,862,767,943,1710:18,15,15,12 +chrX 2386347 . T . . END=2386869 GT:DP:GQ:MIN_DP:PL 0/0:70:75:70:0,75,1538 +chrX 2386870 . A . . END=2386870 GT:DP:GQ:MIN_DP:PL 0/0:65:17:65:0,17,1732 +chrX 2386871 . T . . END=2386881 GT:DP:GQ:MIN_DP:PL 0/0:69:25:69:0,25,1672 +chrX 2386882 . G . . END=2386882 GT:DP:GQ:MIN_DP:PL 0/0:63:0:63:0,0,1482 +chrX 2386883 . T . . END=2386897 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 2386898 . G . . END=2386898 GT:DP:GQ:MIN_DP:PL 0/0:65:8:65:0,8,1573 +chrX 2386899 . C . . END=2387077 GT:DP:GQ:MIN_DP:PL 0/0:67:77:67:0,77,1584 +chrX 2387078 . C T, 855.64 . AS_QUALapprox=|863|0;AS_VarDP=36|32|0;BaseQRankSum=1.100;DP=70;MQRankSum=0.000;QUALapprox=863;RAW_GT_COUNT=0,1,0;RAW_MQandDP=252000,70;ReadPosRankSum=-0.252;VarDP=68 GT:AD:DP:GQ:PL:SB 0/1:36,32,0:68:99:863,0,977,971,1073,2045:23,13,17,15 +chrX 2387079 . A . . END=2387549 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,101,1316 +chrX 2387550 . T C, 1578.06 . AS_QUALapprox=|1592|0;AS_VarDP=0|49|0;DP=49;QUALapprox=1592;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1592,146,0,1592,146,1592:0,0,21,28 +chrX 2387551 . G . . END=2387874 GT:DP:GQ:MIN_DP:PL 0/0:43:61:43:0,61,901 +chrX 2387875 . T . . END=2387875 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,798 +chrX 2387876 . C . . END=2387892 GT:DP:GQ:MIN_DP:PL 0/0:34:30:32:0,30,978 +chrX 2387893 . A . . END=2387893 GT:DP:GQ:MIN_DP:PL 0/0:32:12:32:0,12,874 +chrX 2387894 . C . . END=2387896 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +chrX 2387897 . T . . END=2387897 GT:DP:GQ:MIN_DP:PL 0/0:33:5:33:0,5,919 +chrX 2387898 . C . . END=2387901 GT:DP:GQ:MIN_DP:PL 0/0:38:48:38:0,48,880 +chrX 2387902 . T . . END=2387903 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,589 +chrX 2387904 . C CA,CAA, 419.02 . AS_QUALapprox=|344|302|0;AS_VarDP=0|9|7|0;DP=29;QUALapprox=436;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=16 GT:AD:DP:GQ:PL:SB 1/2:0,9,7,0:16:92:436,152,92,170,0,134,380,144,168,355:0,0,11,5 +chrX 2387905 . A . . END=2387924 GT:DP:GQ:MIN_DP:PL 0/0:48:93:48:0,93,1395 +chrX 2387925 . C . . END=2387926 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,1047 +chrX 2387927 . G . . END=2388218 GT:DP:GQ:MIN_DP:PL 0/0:48:23:44:0,23,1232 +chrX 2388219 . C T, 639.64 . AS_QUALapprox=|647|0;AS_VarDP=30|29|0;BaseQRankSum=-1.508;DP=60;MQRankSum=0.000;QUALapprox=647;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=1.130;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:30,29,0:59:99:647,0,762,736,848,1584:12,18,12,17 +chrX 2388220 . G . . END=2389380 GT:DP:GQ:MIN_DP:PL 0/0:57:44:57:0,44,1201 +chrX 2389381 . A G, 2347.06 . AS_QUALapprox=|2361|0;AS_VarDP=0|73|0;DP=73;QUALapprox=2361;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;VarDP=73 GT:AD:DP:GQ:PL:SB 1/1:0,73,0:73:99:2361,218,0,2361,218,2361:0,0,42,31 +chrX 2389382 . G . . END=2389583 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 2389584 . T G, 633.64 . AS_QUALapprox=|641|0;AS_VarDP=29|25|0;BaseQRankSum=-1.013;DP=56;MQRankSum=0.000;QUALapprox=641;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=0.807;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:29,25,0:54:99:641,0,811,728,886,1614:14,15,12,13 +chrX 2389585 . T . . END=2390143 GT:DP:GQ:MIN_DP:PL 0/0:61:77:61:0,77,1558 +chrX 2390144 . CT C,CTT, 541.02 . AS_QUALapprox=|196|282|0;AS_VarDP=0|13|18|0;DP=55;QUALapprox=558;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194801,55;VarDP=31 GT:AD:DP:GQ:PL:SB 1/2:0,13,18,0:31:99:558,362,492,276,0,318,620,458,336,734:0,0,13,18 +chrX 2390146 . T . . END=2390162 GT:DP:GQ:MIN_DP:PL 0/0:62:90:62:0,90,1530 +chrX 2390163 . A . . END=2390163 GT:DP:GQ:MIN_DP:PL 0/0:50:0:50:0,0,1309 +chrX 2390164 . A . . END=2390439 GT:DP:GQ:MIN_DP:PL 0/0:47:23:44:0,23,1207 +chrX 2390440 . AT A, 447.60 . AS_QUALapprox=|455|0;AS_VarDP=23|21|0;BaseQRankSum=0.295;DP=55;MQRankSum=0.000;QUALapprox=455;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=1.223;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:23,21,0:44:99:455,0,473,524,536,1060:12,11,11,10 +chrX 2390442 . T . . END=2390798 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,113,1504 +chrX 2390799 . C . . END=2390835 GT:DP:GQ:MIN_DP:PL 0/0:67:0:67:0,0,1196 +chrX 2390836 . T C, 1688.06 . AS_QUALapprox=|1702|0;AS_VarDP=0|52|0;DP=69;QUALapprox=1702;RAW_GT_COUNT=0,0,1;RAW_MQandDP=247401,69;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1702,156,0,1814,165,2088:0,0,26,26 +chrX 2390837 . G . . END=2390873 GT:DP:GQ:MIN_DP:PL 0/0:61:0:61:0,0,1048 +chrX 2390874 . A . . END=2391256 GT:DP:GQ:MIN_DP:PL 0/0:52:23:51:0,23,1429 +chrX 2391257 . A C, 1962.06 . AS_QUALapprox=|1976|0;AS_VarDP=0|60|0;DP=62;QUALapprox=1976;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:1976,180,0,1976,180,1976:0,0,33,27 +chrX 2391258 . T . . END=2391871 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 2391872 . G A, 907.64 . AS_QUALapprox=|915|0;AS_VarDP=31|34|0;BaseQRankSum=0.792;DP=65;MQRankSum=0.000;QUALapprox=915;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=1.458;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:31,34,0:65:99:915,0,792,1008,894,1902:21,10,15,19 +chrX 2391873 . G . . END=2392275 GT:DP:GQ:MIN_DP:PL 0/0:53:73:53:0,73,1333 +chrX 2392276 . C A, 945.64 . AS_QUALapprox=|953|0;AS_VarDP=36|35|0;BaseQRankSum=0.909;DP=72;MQRankSum=0.000;QUALapprox=953;RAW_GT_COUNT=0,1,0;RAW_MQandDP=259200,72;ReadPosRankSum=-1.645;VarDP=71 GT:AD:DP:GQ:PL:SB 0/1:36,35,0:71:99:953,0,942,1061,1047,2108:20,16,14,21 +chrX 2392277 . T . . END=2392451 GT:DP:GQ:MIN_DP:PL 0/0:81:99:81:0,120,1800 +chrX 2392452 . G A, 958.64 . AS_QUALapprox=|966|0;AS_VarDP=36|36|0;BaseQRankSum=0.123;DP=74;MQRankSum=0.000;QUALapprox=966;RAW_GT_COUNT=0,1,0;RAW_MQandDP=266400,74;ReadPosRankSum=-1.955;VarDP=72 GT:AD:DP:GQ:PL:SB 0/1:36,36,0:72:99:966,0,935,1073,1044,2116:20,16,17,19 +chrX 2392453 . C . . END=2392759 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,105,1454 +chrX 2392760 . C . . END=2392760 GT:DP:GQ:MIN_DP:PL 0/0:55:11:55:0,11,1423 +chrX 2392761 . T . . END=2392764 GT:DP:GQ:MIN_DP:PL 0/0:59:73:59:0,73,1722 +chrX 2392765 . T TATAA, 2374.03 . AS_QUALapprox=|2388|0;AS_VarDP=0|54|0;DP=59;QUALapprox=2388;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:2388,162,0,2388,163,2389:0,0,23,31 +chrX 2392766 . A . . END=2392819 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,113,1688 +chrX 2392820 . C CAT, 2447.03 . AS_QUALapprox=|2461|0;AS_VarDP=0|55|0;DP=56;QUALapprox=2461;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:2461,166,0,2461,166,2461:0,0,29,26 +chrX 2392821 . A . . END=2392901 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 2392902 . TTA T, 1293.60 . AS_QUALapprox=|1301|0;AS_VarDP=29|34|0;BaseQRankSum=-3.148;DP=66;MQRankSum=0.000;QUALapprox=1301;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=-0.352;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:29,34,0:63:99:1301,0,1115,1388,1218,2606:12,17,17,17 +chrX 2392905 . T . . END=2392981 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 2392982 . C G, 894.64 . AS_QUALapprox=|902|0;AS_VarDP=23|34|0;BaseQRankSum=0.270;DP=60;MQRankSum=0.000;QUALapprox=902;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=0.968;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:23,34,0:57:99:902,0,539,970,641,1611:12,11,22,12 +chrX 2392983 . A . . END=2393418 GT:DP:GQ:MIN_DP:PL 0/0:70:92:70:0,92,1427 +chrX 2393419 . T C, 1735.06 . AS_QUALapprox=|1749|0;AS_VarDP=0|55|0;DP=59;QUALapprox=1749;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,55,0:55:99:0|1:2393419_T_C:1749,164,0,1749,164,1749:2393419:0,0,21,34 +chrX 2393420 . G . . END=2393456 GT:DP:GQ:MIN_DP:PL 0/0:48:34:46:0,34,1257 +chrX 2393457 . T . . END=2393458 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,1152 +chrX 2393459 . A . . END=2393476 GT:DP:GQ:MIN_DP:PL 0/0:45:82:45:0,82,1163 +chrX 2393477 . A . . END=2393477 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,1022 +chrX 2393478 . T . . END=2393483 GT:DP:GQ:MIN_DP:PL 0/0:47:72:47:0,72,1390 +chrX 2393484 . G . . END=2393484 GT:DP:GQ:MIN_DP:PL 0/0:45:16:45:0,16,1206 +chrX 2393485 . C . . END=2393492 GT:DP:GQ:MIN_DP:PL 0/0:50:49:50:0,49,1390 +chrX 2393493 . T . . END=2393494 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,952 +chrX 2393495 . A . . END=2393509 GT:DP:GQ:MIN_DP:PL 0/0:50:46:50:0,46,1399 +chrX 2393510 . C . . END=2393510 GT:DP:GQ:MIN_DP:PL 0/0:51:14:51:0,14,1394 +chrX 2393511 . C . . END=2393519 GT:DP:GQ:MIN_DP:PL 0/0:50:68:50:0,68,1036 +chrX 2393520 . C . . END=2393521 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,724 +chrX 2393522 . G . . END=2393534 GT:DP:GQ:MIN_DP:PL 0/0:52:25:43:0,25,1136 +chrX 2393535 . A . . END=2393535 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,788 +chrX 2393536 . C . . END=2393545 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 2393546 . C . . END=2393546 GT:DP:GQ:MIN_DP:PL 0/0:60:0:60:0,0,745 +chrX 2393547 . C . . END=2393547 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 2393548 . T . . END=2393549 GT:DP:GQ:MIN_DP:PL 0/0:57:0:57:0,0,84 +chrX 2393550 . T . . END=2393554 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 2393555 . G . . END=2393555 GT:DP:GQ:MIN_DP:PL 0/0:60:0:60:0,0,0 +chrX 2393556 . G . . END=2393556 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 2393557 . C . . END=2393557 GT:DP:GQ:MIN_DP:PL 0/0:71:0:71:0,0,1531 +chrX 2393558 . G . . END=2393563 GT:DP:GQ:MIN_DP:PL 0/0:75:99:75:0,120,1800 +chrX 2393564 . A G, 1.89 . AS_QUALapprox=|9|0;AS_VarDP=25|2|0;BaseQRankSum=-2.634;DP=32;MQRankSum=0.424;QUALapprox=9;RAW_GT_COUNT=0,1,0;RAW_MQandDP=114100,32;ReadPosRankSum=-1.111;VarDP=27 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,2,0:27:9:0|1:2393564_A_G:9,0,1009,84,1015,1099:2393564:9,16,1,1 +chrX 2393565 . G C, 1.89 . AS_QUALapprox=|9|0;AS_VarDP=25|2|0;BaseQRankSum=-0.871;DP=30;MQRankSum=0.424;QUALapprox=9;RAW_GT_COUNT=0,1,0;RAW_MQandDP=106900,30;ReadPosRankSum=-1.158;VarDP=27 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,2,0:27:9:0|1:2393564_A_G:9,0,1009,84,1015,1099:2393564:9,16,1,1 +chrX 2393566 . G . . END=2393584 GT:DP:GQ:MIN_DP:PL 0/0:84:99:84:0,120,1800 +chrX 2393585 . A . . END=2393585 GT:DP:GQ:MIN_DP:PL 0/0:93:0:93:0,0,1818 +chrX 2393586 . T . . END=2393601 GT:DP:GQ:MIN_DP:PL 0/0:103:99:103:0,120,1800 +chrX 2393602 . G . . END=2393602 GT:DP:GQ:MIN_DP:PL 0/0:80:0:80:0,0,1785 +chrX 2393603 . A . . END=2393634 GT:DP:GQ:MIN_DP:PL 0/0:109:38:102:0,38,1800 +chrX 2393635 . C . . END=2393635 GT:DP:GQ:MIN_DP:PL 0/0:90:0:90:0,0,298 +chrX 2393636 . G . . END=2393640 GT:DP:GQ:MIN_DP:PL 0/0:99:99:99:0,120,1800 +chrX 2393641 . A . . END=2393641 GT:DP:GQ:MIN_DP:PL 0/0:94:0:94:0,0,1021 +chrX 2393642 . C . . END=2393651 GT:DP:GQ:MIN_DP:PL 0/0:93:99:93:0,120,1800 +chrX 2393652 . C . . END=2393652 GT:DP:GQ:MIN_DP:PL 0/0:81:0:81:0,0,789 +chrX 2393653 . C . . END=2393654 GT:DP:GQ:MIN_DP:PL 0/0:93:99:93:0,120,1800 +chrX 2393655 . G . . END=2393655 GT:DP:GQ:MIN_DP:PL 0/0:75:0:75:0,0,707 +chrX 2393656 . T . . END=2393661 GT:DP:GQ:MIN_DP:PL 0/0:92:99:92:0,117,1800 +chrX 2393662 . C . . END=2393662 GT:DP:GQ:MIN_DP:PL 0/0:81:0:81:0,0,698 +chrX 2393663 . C . . END=2393670 GT:DP:GQ:MIN_DP:PL 0/0:84:99:84:0,120,1800 +chrX 2393671 . C . . END=2393671 GT:DP:GQ:MIN_DP:PL 0/0:81:0:81:0,0,1760 +chrX 2393672 . G . . END=2393676 GT:DP:GQ:MIN_DP:PL 0/0:80:99:80:0,101,1800 +chrX 2393677 . A . . END=2393677 GT:DP:GQ:MIN_DP:PL 0/0:77:0:77:0,0,1541 +chrX 2393678 . C . . END=2393689 GT:DP:GQ:MIN_DP:PL 0/0:71:82:71:0,82,1800 +chrX 2393690 . T . . END=2393691 GT:DP:GQ:MIN_DP:PL 0/0:59:0:59:0,0,780 +chrX 2393692 . T . . END=2393697 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 2393698 . G . . END=2393698 GT:DP:GQ:MIN_DP:PL 0/0:60:0:60:0,0,1397 +chrX 2393699 . C . . END=2393712 GT:DP:GQ:MIN_DP:PL 0/0:55:64:55:0,64,1283 +chrX 2393713 . A . . END=2393713 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,715 +chrX 2393714 . C . . END=2393723 GT:DP:GQ:MIN_DP:PL 0/0:45:80:45:0,80,1204 +chrX 2393724 . C . . END=2393724 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,749 +chrX 2393725 . C . . END=2393726 GT:DP:GQ:MIN_DP:PL 0/0:43:98:43:0,98,1225 +chrX 2393727 . G . . END=2393727 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,566 +chrX 2393728 . T . . END=2393734 GT:DP:GQ:MIN_DP:PL 0/0:39:75:39:0,75,1125 +chrX 2393735 . C . . END=2393736 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,819 +chrX 2393737 . C . . END=2393740 GT:DP:GQ:MIN_DP:PL 0/0:33:63:33:0,63,945 +chrX 2393741 . C . . END=2393741 GT:DP:GQ:MIN_DP:PL 0/0:29:0:29:0,0,749 +chrX 2393742 . G . . END=2393746 GT:DP:GQ:MIN_DP:PL 0/0:29:46:29:0,46,758 +chrX 2393747 . A . . END=2393747 GT:DP:GQ:MIN_DP:PL 0/0:26:0:26:0,0,616 +chrX 2393748 . C . . END=2393767 GT:DP:GQ:MIN_DP:PL 0/0:21:22:17:0,22,442 +chrX 2393768 . G . . END=2393769 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,287 +chrX 2393770 . G . . END=2393791 GT:DP:GQ:MIN_DP:PL 0/0:14:21:11:0,21,258 +chrX 2393792 . C . . END=2393796 GT:DP:GQ:MIN_DP:PL 0/0:9:15:9:0,15,225 +chrX 2393797 . C . . END=2393797 GT:DP:GQ:MIN_DP:PL 0/0:13:21:13:0,21,315 +chrX 2393798 . T . . END=2393822 GT:DP:GQ:MIN_DP:PL 0/0:7:0:7:0,0,135 +chrX 2393823 . C . . END=2393841 GT:DP:GQ:MIN_DP:PL 0/0:11:21:8:0,21,223 +chrX 2393842 . A . . END=2393842 GT:DP:GQ:MIN_DP:PL 0/0:13:14:13:0,14,362 +chrX 2393843 . C . . END=2393843 GT:DP:GQ:MIN_DP:PL 0/0:14:42:14:0,42,446 +chrX 2393844 . G . . END=2393844 GT:DP:GQ:MIN_DP:PL 0/0:15:0:15:0,0,343 +chrX 2393845 . A . . END=2393853 GT:DP:GQ:MIN_DP:PL 0/0:16:23:16:0,23,461 +chrX 2393854 . G . . END=2393855 GT:DP:GQ:MIN_DP:PL 0/0:18:0:18:0,0,391 +chrX 2393856 . C . . END=2393862 GT:DP:GQ:MIN_DP:PL 0/0:20:25:20:0,25,616 +chrX 2393863 . A . . END=2393863 GT:DP:GQ:MIN_DP:PL 0/0:22:0:22:0,0,487 +chrX 2393864 . T . . END=2393865 GT:DP:GQ:MIN_DP:PL 0/0:24:44:24:0,44,710 +chrX 2393866 . T . . END=2393866 GT:DP:GQ:MIN_DP:PL 0/0:24:0:24:0,0,556 +chrX 2393867 . C . . END=2393870 GT:DP:GQ:MIN_DP:PL 0/0:26:28:26:0,28,693 +chrX 2393871 . G . . END=2393872 GT:DP:GQ:MIN_DP:PL 0/0:29:0:29:0,0,540 +chrX 2393873 . C . . END=2393877 GT:DP:GQ:MIN_DP:PL 0/0:33:74:33:0,74,935 +chrX 2393878 . A . . END=2393878 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,657 +chrX 2393879 . A . . END=2393995 GT:DP:GQ:MIN_DP:PL 0/0:52:43:52:0,43,895 +chrX 2393996 . T C, 1549.06 . AS_QUALapprox=|1563|0;AS_VarDP=0|45|0;DP=48;QUALapprox=1563;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=45 GT:AD:DP:GQ:PL:SB 1/1:0,45,0:45:99:1563,135,0,1563,135,1563:0,0,22,23 +chrX 2393997 . C . . END=2394095 GT:DP:GQ:MIN_DP:PL 0/0:53:90:53:0,90,1474 +chrX 2394096 . C T, 1792.06 . AS_QUALapprox=|1806|0;AS_VarDP=0|55|0;DP=56;QUALapprox=1806;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1806,165,0,1806,165,1806:0,0,30,25 +chrX 2394097 . A . . END=2394566 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 2394567 . G C, 1022.64 . AS_QUALapprox=|1030|0;AS_VarDP=25|37|0;BaseQRankSum=-0.378;DP=63;MQRankSum=0.000;QUALapprox=1030;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=-0.545;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:25,37,0:62:99:1030,0,649,1105,759,1864:12,13,25,12 +chrX 2394568 . G . . END=2395000 GT:DP:GQ:MIN_DP:PL 0/0:60:92:60:0,92,1390 +chrX 2395001 . GT G, 819.60 . AS_QUALapprox=|827|0;AS_VarDP=23|26|0;BaseQRankSum=-1.315;DP=50;MQRankSum=0.000;QUALapprox=827;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=0.020;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:23,26,0:49:99:827,0,703,896,781,1677:9,14,11,15 +chrX 2395003 . T . . END=2395153 GT:DP:GQ:MIN_DP:PL 0/0:50:97:50:0,97,1375 +chrX 2395154 . C T, 686.64 . AS_QUALapprox=|694|0;AS_VarDP=31|27|0;BaseQRankSum=-0.320;DP=59;MQRankSum=0.000;QUALapprox=694;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-0.725;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:31,27,0:58:99:694,0,827,787,907,1694:18,13,17,10 +chrX 2395155 . C . . END=2395506 GT:DP:GQ:MIN_DP:PL 0/0:74:99:74:0,120,1800 +chrX 2395507 . A T, 2328.06 . AS_QUALapprox=|2342|0;AS_VarDP=0|73|0;DP=75;QUALapprox=2342;RAW_GT_COUNT=0,0,1;RAW_MQandDP=270000,75;VarDP=73 GT:AD:DP:GQ:PL:SB 1/1:0,73,0:73:99:2342,219,0,2342,219,2342:0,0,34,39 +chrX 2395508 . G . . END=2395726 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,112,1692 +chrX 2395727 . G A, 1971.06 . AS_QUALapprox=|1985|0;AS_VarDP=2|62|0;BaseQRankSum=2.721;DP=66;MQRankSum=0.000;QUALapprox=1985;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;ReadPosRankSum=1.853;VarDP=64 GT:AD:DP:GQ:PL:SB 1/1:2,62,0:64:99:1985,143,0,1991,186,2035:1,1,30,32 +chrX 2395728 . G . . END=2395890 GT:DP:GQ:MIN_DP:PL 0/0:50:75:50:0,75,1394 +chrX 2395891 . C A, 1360.06 . AS_QUALapprox=|1374|0;AS_VarDP=0|42|0;DP=42;QUALapprox=1374;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151200,42;VarDP=42 GT:AD:DP:GQ:PL:SB 1/1:0,42,0:42:99:1374,125,0,1374,125,1374:0,0,23,19 +chrX 2395892 . T . . END=2396374 GT:DP:GQ:MIN_DP:PL 0/0:53:96:53:0,96,1429 +chrX 2396375 . C CT,CTTTTT, 910.02 . AS_QUALapprox=|323|754|0;AS_VarDP=0|8|20|0;DP=47;QUALapprox=927;RAW_GT_COUNT=0,0,1;RAW_MQandDP=161200,47;VarDP=28 GT:AD:DP:GQ:PL:SB 1/2:0,8,20,0:28:99:927,664,604,173,0,237,893,655,247,926:0,0,17,11 +chrX 2396376 . T . . END=2396395 GT:DP:GQ:MIN_DP:PL 0/0:42:42:42:0,42,630 +chrX 2396396 . G . . END=2396396 GT:DP:GQ:MIN_DP:PL 0/0:24:0:24:0,0,605 +chrX 2396397 . A . . END=2396447 GT:DP:GQ:MIN_DP:PL 0/0:23:41:23:0,41,680 +chrX 2396448 . G C, 953.06 . AS_QUALapprox=|967|0;AS_VarDP=0|24|0;DP=24;QUALapprox=967;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=24 GT:AD:DP:GQ:PL:SB 1/1:0,24,0:24:72:967,72,0,967,72,967:0,0,13,11 +chrX 2396449 . C . . END=2396450 GT:DP:GQ:MIN_DP:PL 0/0:24:72:24:0,72,814 +chrX 2396451 . C T, 372.64 . AS_QUALapprox=|380|0;AS_VarDP=11|13|0;BaseQRankSum=0.000;DP=25;MQRankSum=0.000;QUALapprox=380;RAW_GT_COUNT=0,1,0;RAW_MQandDP=90000,25;ReadPosRankSum=-0.986;VarDP=24 GT:AD:DP:GQ:PL:SB 0/1:11,13,0:24:99:380,0,310,413,349,762:7,4,6,7 +chrX 2396452 . A . . END=2396480 GT:DP:GQ:MIN_DP:PL 0/0:28:64:28:0,64,855 +chrX 2396481 . C A, 1042.06 . AS_QUALapprox=|1056|0;AS_VarDP=0|32|0;DP=33;QUALapprox=1056;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=32 GT:AD:DP:GQ:PL:SB 1/1:0,32,0:32:96:1056,96,0,1056,96,1056:0,0,17,15 +chrX 2396482 . A . . END=2396764 GT:DP:GQ:MIN_DP:PL 0/0:50:70:50:0,70,958 +chrX 2396765 . CT C, 316.60 . AS_QUALapprox=|324|0;AS_VarDP=14|17|0;BaseQRankSum=0.307;DP=40;MQRankSum=0.000;QUALapprox=324;RAW_GT_COUNT=0,1,0;RAW_MQandDP=141845,40;ReadPosRankSum=1.232;VarDP=31 GT:AD:DP:GQ:PL:SB 0/1:14,17,0:31:99:324,0,248,366,299,665:4,10,8,9 +chrX 2396767 . T . . END=2396849 GT:DP:GQ:MIN_DP:PL 0/0:37:42:37:0,42,931 +chrX 2396850 . C T, 502.64 . AS_QUALapprox=|510|0;AS_VarDP=21|19|0;BaseQRankSum=-0.109;DP=44;MQRankSum=0.000;QUALapprox=510;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=-0.420;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:21,19,0:40:99:510,0,580,573,637,1210:12,9,8,11 +chrX 2396851 . G . . END=2397458 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,113,1494 +chrX 2397459 . G A, 1833.06 . AS_QUALapprox=|1847|0;AS_VarDP=1|54|0;BaseQRankSum=4.402;DP=59;MQRankSum=0.000;QUALapprox=1847;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;ReadPosRankSum=0.756;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:1,54,0:55:99:1847,155,0,1849,162,1856:0,1,29,25 +chrX 2397460 . G . . END=2397570 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 2397571 . CA C, 1198.03 . AS_QUALapprox=|1212|0;AS_VarDP=0|43|0;DP=52;QUALapprox=1212;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=43 GT:AD:DP:GQ:PL:SB 1/1:0,43,0:43:99:1212,129,0,1212,129,1212:0,0,23,20 +chrX 2397573 . A . . END=2397635 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 2397636 . AT A, 223.60 . AS_QUALapprox=|231|0;AS_VarDP=34|13|0;BaseQRankSum=0.434;DP=53;MQRankSum=0.000;QUALapprox=231;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=0.854;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:34,13,0:47:99:231,0,824,333,863,1197:13,21,7,6 +chrX 2397638 . T . . END=2397929 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,101,1280 +chrX 2397930 . G GCACA, 534.60 . AS_QUALapprox=|542|0;AS_VarDP=15|14|0;BaseQRankSum=0.439;DP=40;MQRankSum=0.000;QUALapprox=542;RAW_GT_COUNT=0,1,0;RAW_MQandDP=144000,40;ReadPosRankSum=0.240;VarDP=29 GT:AD:DP:GQ:PL:SB 0/1:15,14,0:29:99:542,0,588,588,630,1218:8,7,7,7 +chrX 2397931 . C . . END=2398669 GT:DP:GQ:MIN_DP:PL 0/0:53:61:53:0,61,1195 +chrX 2398670 . C CT, 356.60 . AS_QUALapprox=|364|0;AS_VarDP=8|23|0;BaseQRankSum=0.990;DP=47;MQRankSum=-1.013;QUALapprox=364;RAW_GT_COUNT=0,1,0;RAW_MQandDP=161364,47;ReadPosRankSum=0.610;VarDP=31 GT:AD:DP:GQ:PL:SB 0/1:8,23,0:31:94:364,0,94,388,161,549:2,6,16,7 +chrX 2398671 . T . . END=2398687 GT:DP:GQ:MIN_DP:PL 0/0:50:81:50:0,81,1215 +chrX 2398688 . G . . END=2398688 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,751 +chrX 2398689 . A . . END=2399008 GT:DP:GQ:MIN_DP:PL 0/0:55:48:55:0,48,1021 +chrX 2399009 . A C, 1148.64 . AS_QUALapprox=|1156|0;AS_VarDP=26|42|0;BaseQRankSum=0.545;DP=71;MQRankSum=0.000;QUALapprox=1156;RAW_GT_COUNT=0,1,0;RAW_MQandDP=255600,71;ReadPosRankSum=-0.758;VarDP=68 GT:AD:DP:GQ:PL:SB 0/1:26,42,0:68:99:1156,0,640,1234,766,2000:10,16,20,22 +chrX 2399010 . G . . END=2399120 GT:DP:GQ:MIN_DP:PL 0/0:58:35:58:0,35,1623 +chrX 2399121 . G . . END=2399127 GT:DP:GQ:MIN_DP:PL 0/0:64:0:64:0,0,1587 +chrX 2399128 . A AAAATTAAACC, 1431.60 . AS_QUALapprox=|1439|0;AS_VarDP=24|36|0;BaseQRankSum=0.764;DP=63;MQRankSum=0.000;QUALapprox=1439;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=0.068;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:24,36,0:60:99:1439,0,849,1512,958,2469:15,9,18,18 +chrX 2399129 . T . . END=2399171 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 2399172 . A G, 2001.06 . AS_QUALapprox=|2015|0;AS_VarDP=0|61|0;DP=63;QUALapprox=2015;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=61 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:2015,183,0,2015,183,2015:0,0,33,28 +chrX 2399173 . T . . END=2399405 GT:DP:GQ:MIN_DP:PL 0/0:53:45:53:0,45,1373 +chrX 2399406 . T TAA, 703.60 . AS_QUALapprox=|711|0;AS_VarDP=19|25|0;BaseQRankSum=-1.534;DP=56;MQRankSum=0.000;QUALapprox=711;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-1.482;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:19,25,0:44:99:711,0,548,768,623,1391:9,10,15,10 +chrX 2399407 . A . . END=2399741 GT:DP:GQ:MIN_DP:PL 0/0:38:33:36:0,33,955 +chrX 2399742 . AC A, 244.60 . AS_QUALapprox=|252|0;AS_VarDP=33|13|0;BaseQRankSum=0.081;DP=49;MQRankSum=-1.545;QUALapprox=252;RAW_GT_COUNT=0,1,0;RAW_MQandDP=170890,49;ReadPosRankSum=-1.107;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:33,13,0:46:99:252,0,1040,351,1079,1430:13,20,10,3 +chrX 2399744 . A . . END=2400278 GT:DP:GQ:MIN_DP:PL 0/0:63:94:63:0,94,1418 +chrX 2400279 . A G, 544.64 . AS_QUALapprox=|552|0;AS_VarDP=32|22|0;BaseQRankSum=-0.968;DP=55;MQRankSum=0.000;QUALapprox=552;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=0.793;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:32,22,0:54:99:552,0,910,648,976,1624:15,17,14,8 +chrX 2400280 . T . . END=2401107 GT:DP:GQ:MIN_DP:PL 0/0:59:97:59:0,97,1618 +chrX 2401108 . CTT C, 316.60 . AS_QUALapprox=|324|0;AS_VarDP=16|13|0;BaseQRankSum=-0.052;DP=50;MQRankSum=0.000;QUALapprox=324;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176841,50;ReadPosRankSum=1.798;VarDP=29 GT:AD:DP:GQ:PL:SB 0/1:16,13,0:29:99:324,0,368,372,408,780:8,8,2,11 +chrX 2401111 . T . . END=2402904 GT:DP:GQ:MIN_DP:PL 0/0:54:38:42:0,38,1080 +chrX 2402905 . G . . END=2402905 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,933 +chrX 2402906 . A . . END=2403743 GT:DP:GQ:MIN_DP:PL 0/0:60:82:60:0,82,1197 +chrX 2403744 . T G, 665.64 . AS_QUALapprox=|673|0;AS_VarDP=23|24|0;BaseQRankSum=0.974;DP=49;MQRankSum=-1.369;QUALapprox=673;RAW_GT_COUNT=0,1,0;RAW_MQandDP=174200,49;ReadPosRankSum=-0.436;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:23,24,0:47:99:673,0,603,742,676,1418:10,13,13,11 +chrX 2403745 . A . . END=2404113 GT:DP:GQ:MIN_DP:PL 0/0:56:87:56:0,87,1265 +chrX 2404114 . T C, 870.64 . AS_QUALapprox=|878|0;AS_VarDP=21|32|0;BaseQRankSum=0.387;DP=54;MQRankSum=0.000;QUALapprox=878;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=0.555;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:21,32,0:53:99:878,0,521,941,617,1558:17,4,13,19 +chrX 2404115 . T . . END=2404740 GT:DP:GQ:MIN_DP:PL 0/0:60:80:60:0,80,1302 +chrX 2404741 . C T, 715.64 . AS_QUALapprox=|723|0;AS_VarDP=25|27|0;BaseQRankSum=-0.103;DP=53;MQRankSum=0.000;QUALapprox=723;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=-0.339;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:25,27,0:52:99:723,0,642,797,723,1520:11,14,14,13 +chrX 2404742 . G . . END=2404967 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,105,1566 +chrX 2404968 . T C, 824.64 . AS_QUALapprox=|832|0;AS_VarDP=29|33|0;BaseQRankSum=-1.217;DP=63;MQRankSum=0.000;QUALapprox=832;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=0.141;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:29,33,0:62:99:832,0,717,918,816,1734:17,12,16,17 +chrX 2404969 . T . . END=2405002 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 2405003 . C T, 923.64 . AS_QUALapprox=|931|0;AS_VarDP=27|35|0;BaseQRankSum=-0.363;DP=68;MQRankSum=0.000;QUALapprox=931;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=1.001;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:27,35,0:62:99:931,0,663,1011,768,1779:16,11,19,16 +chrX 2405004 . C . . END=2405446 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,104,1681 +chrX 2405447 . T C, 894.64 . AS_QUALapprox=|902|0;AS_VarDP=22|33|0;BaseQRankSum=1.715;DP=57;MQRankSum=-0.779;QUALapprox=902;RAW_GT_COUNT=0,1,0;RAW_MQandDP=204001,57;ReadPosRankSum=0.043;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:22,33,0:55:99:902,0,484,968,584,1551:11,11,17,16 +chrX 2405448 . G . . END=2405917 GT:DP:GQ:MIN_DP:PL 0/0:61:90:61:0,90,1577 +chrX 2405918 . A AC, 872.60 . AS_QUALapprox=|880|0;AS_VarDP=27|24|0;BaseQRankSum=-2.343;DP=54;MQRankSum=0.000;QUALapprox=880;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=1.217;VarDP=51 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,24,0:51:99:0|1:2405918_A_AC:880,0,1020,962,1092,2054:2405918:18,9,11,13 +chrX 2405919 . A G, 872.64 . AS_QUALapprox=|880|0;AS_VarDP=27|24|0;BaseQRankSum=-2.001;DP=53;MQRankSum=0.000;QUALapprox=880;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=1.038;VarDP=51 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,24,0:51:99:0|1:2405918_A_AC:880,0,1020,962,1092,2054:2405918:18,9,11,13 +chrX 2405920 . T . . END=2406031 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,103,1351 +chrX 2406032 . G A, 881.64 . AS_QUALapprox=|889|0;AS_VarDP=43|33|0;BaseQRankSum=3.513;DP=80;MQRankSum=0.000;QUALapprox=889;RAW_GT_COUNT=0,1,0;RAW_MQandDP=288000,80;ReadPosRankSum=0.912;VarDP=76 GT:AD:DP:GQ:PL:SB 0/1:43,33,0:76:99:889,0,1070,1018,1169,2187:20,23,18,15 +chrX 2406033 . C . . END=2406442 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,101,1539 +chrX 2406443 . GT G, 501.60 . AS_QUALapprox=|509|0;AS_VarDP=23|23|0;BaseQRankSum=0.835;DP=51;MQRankSum=0.000;QUALapprox=509;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180961,51;ReadPosRankSum=-0.703;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:23,23,0:46:99:509,0,509,578,578,1157:14,9,12,11 +chrX 2406445 . T . . END=2406645 GT:DP:GQ:MIN_DP:PL 0/0:44:84:44:0,84,1205 +chrX 2406646 . A G, 826.64 . AS_QUALapprox=|834|0;AS_VarDP=26|32|0;BaseQRankSum=-1.672;DP=60;MQRankSum=-1.261;QUALapprox=834;RAW_GT_COUNT=0,1,0;RAW_MQandDP=214525,60;ReadPosRankSum=0.524;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:26,32,0:58:99:834,0,706,912,801,1713:18,8,14,18 +chrX 2406647 . G . . END=2406683 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 2406684 . A G, 1414.64 . AS_QUALapprox=|1422|0;AS_VarDP=30|37|0;BaseQRankSum=-0.317;DP=69;MQRankSum=1.141;QUALapprox=1422;RAW_GT_COUNT=0,1,0;RAW_MQandDP=247609,69;ReadPosRankSum=-1.797;VarDP=67 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:30,37,0:67:99:0|1:2406684_A_G:1422,0,1128,1512,1239,2752:2406684:21,9,19,18 +chrX 2406685 . C . . END=2406692 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 2406693 . G A, 1478.64 . AS_QUALapprox=|1486|0;AS_VarDP=30|39|0;BaseQRankSum=1.703;DP=70;MQRankSum=1.169;QUALapprox=1486;RAW_GT_COUNT=0,1,0;RAW_MQandDP=251209,70;ReadPosRankSum=-1.943;VarDP=69 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:30,39,0:69:99:0|1:2406684_A_G:1486,0,1132,1576,1249,2825:2406684:22,8,21,18 +chrX 2406694 . G . . END=2407038 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,111,1665 +chrX 2407039 . C G, 548.64 . AS_QUALapprox=|556|0;AS_VarDP=26|22|0;BaseQRankSum=-0.974;DP=52;MQRankSum=0.000;QUALapprox=556;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=-1.666;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:26,22,0:48:99:556,0,714,634,780,1414:12,14,14,8 +chrX 2407040 . A . . END=2408169 GT:DP:GQ:MIN_DP:PL 0/0:59:98:59:0,98,1276 +chrX 2408170 . G T, 1074.64 . AS_QUALapprox=|1082|0;AS_VarDP=22|39|0;BaseQRankSum=0.749;DP=63;MQRankSum=0.000;QUALapprox=1082;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=-0.706;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:22,39,0:61:99:1082,0,511,1148,628,1777:11,11,18,21 +chrX 2408171 . A . . END=2408700 GT:DP:GQ:MIN_DP:PL 0/0:62:79:62:0,79,1587 +chrX 2408701 . G GA, 464.60 . AS_QUALapprox=|472|0;AS_VarDP=19|24|0;BaseQRankSum=-0.693;DP=55;MQRankSum=0.000;QUALapprox=472;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-1.052;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:19,24,0:43:99:472,0,399,530,471,1001:12,7,13,11 +chrX 2408702 . A . . END=2408875 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 2408876 . C CA, 424.60 . AS_QUALapprox=|432|0;AS_VarDP=20|21|0;BaseQRankSum=0.784;DP=57;MQRankSum=0.000;QUALapprox=432;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-1.488;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:20,21,0:41:99:432,0,471,492,534,1026:11,9,13,8 +chrX 2408877 . A . . END=2409321 GT:DP:GQ:MIN_DP:PL 0/0:61:90:61:0,90,1299 +chrX 2409322 . T C, 808.64 . AS_QUALapprox=|816|0;AS_VarDP=35|32|0;BaseQRankSum=1.192;DP=68;MQRankSum=0.000;QUALapprox=816;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=-0.634;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:35,32,0:67:99:816,0,875,921,971,1892:14,21,17,15 +chrX 2409323 . G . . END=2410060 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 2410061 . T C, 720.64 . AS_QUALapprox=|728|0;AS_VarDP=28|28|0;BaseQRankSum=-0.727;DP=57;MQRankSum=0.000;QUALapprox=728;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-0.025;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:28,28,0:56:99:728,0,765,813,849,1662:9,19,8,20 +chrX 2410062 . G . . END=2410734 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,114,1800 +chrX 2410735 . A G, 515.64 . AS_QUALapprox=|523|0;AS_VarDP=30|21|0;BaseQRankSum=1.139;DP=52;MQRankSum=0.000;QUALapprox=523;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=-0.258;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:30,21,0:51:99:523,0,745,612,807,1419:14,16,10,11 +chrX 2410736 . A . . END=2411479 GT:DP:GQ:MIN_DP:PL 0/0:61:94:61:0,94,1429 +chrX 2411480 . G A, 432.64 . AS_QUALapprox=|440|0;AS_VarDP=30|17|0;BaseQRankSum=1.230;DP=49;MQRankSum=0.797;QUALapprox=440;RAW_GT_COUNT=0,1,0;RAW_MQandDP=175825,49;ReadPosRankSum=0.764;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:30,17,0:47:99:440,0,804,529,855,1385:20,10,10,7 +chrX 2411481 . G . . END=2411553 GT:DP:GQ:MIN_DP:PL 0/0:38:51:38:0,51,765 +chrX 2411554 . C A, 29.64 . AS_QUALapprox=|37|0;AS_VarDP=23|7|0;BaseQRankSum=-1.300;DP=39;MQRankSum=-0.794;QUALapprox=37;RAW_GT_COUNT=0,1,0;RAW_MQandDP=135504,39;ReadPosRankSum=0.810;VarDP=30 GT:AD:DP:GQ:PL:SB 0/1:23,7,0:30:37:37,0,517,104,535,639:17,6,0,7 +chrX 2411555 . A . . END=2411751 GT:DP:GQ:MIN_DP:PL 0/0:52:75:52:0,75,1125 +chrX 2411752 . C CA, 299.60 . AS_QUALapprox=|307|0;AS_VarDP=16|14|0;BaseQRankSum=-1.106;DP=33;MQRankSum=-1.002;QUALapprox=307;RAW_GT_COUNT=0,1,0;RAW_MQandDP=118009,33;ReadPosRankSum=1.289;VarDP=30 GT:AD:DP:GQ:PL:SB 0/1:16,14,0:30:99:307,0,369,356,411,767:5,11,7,7 +chrX 2411753 . A . . END=2412083 GT:DP:GQ:MIN_DP:PL 0/0:50:79:50:0,79,1152 +chrX 2412084 . A G, 808.64 . AS_QUALapprox=|816|0;AS_VarDP=36|31|0;BaseQRankSum=-0.927;DP=69;MQRankSum=0.000;QUALapprox=816;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=1.340;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:36,31,0:67:99:816,0,1010,924,1103,2027:24,12,20,11 +chrX 2412085 . T . . END=2412251 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,120,1800 +chrX 2412252 . A T, 718.64 . AS_QUALapprox=|726|0;AS_VarDP=25|27|0;BaseQRankSum=-0.777;DP=56;MQRankSum=0.000;QUALapprox=726;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198400,56;ReadPosRankSum=1.163;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:25,27,0:52:99:726,0,701,801,782,1583:13,12,11,16 +chrX 2412253 . T . . END=2412372 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,100,1643 +chrX 2412373 . T C, 645.64 . AS_QUALapprox=|653|0;AS_VarDP=31|26|0;BaseQRankSum=-0.318;DP=57;MQRankSum=0.000;QUALapprox=653;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-1.306;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:31,26,0:57:99:653,0,811,745,890,1635:13,18,13,13 +chrX 2412374 . G . . END=2413055 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,104,1414 +chrX 2413056 . A G, 610.64 . AS_QUALapprox=|618|0;AS_VarDP=26|24|0;BaseQRankSum=-1.826;DP=54;MQRankSum=-1.549;QUALapprox=618;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190425,54;ReadPosRankSum=-0.068;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:26,24,0:50:99:618,0,744,697,815,1512:13,13,13,11 +chrX 2413057 . C . . END=2413150 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 2413151 . C T, 758.64 . AS_QUALapprox=|766|0;AS_VarDP=28|28|0;BaseQRankSum=1.389;DP=58;MQRankSum=0.051;QUALapprox=766;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205350,58;ReadPosRankSum=-0.590;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:28,28,0:56:99:766,0,695,849,779,1628:14,14,8,20 +chrX 2413152 . G . . END=2413349 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 2413350 . C CT, 750.60 . AS_QUALapprox=|758|0;AS_VarDP=31|25|0;BaseQRankSum=-0.045;DP=56;MQRankSum=0.000;QUALapprox=758;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-0.322;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:31,25,0:56:99:758,0,975,851,1050,1901:18,13,15,10 +chrX 2413351 . T . . END=2413796 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,110,1529 +chrX 2413797 . T C, 624.64 . AS_QUALapprox=|632|0;AS_VarDP=24|23|0;BaseQRankSum=0.578;DP=53;MQRankSum=0.000;QUALapprox=632;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=-0.021;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:24,23,0:47:99:632,0,644,703,713,1416:10,14,8,15 +chrX 2413798 . A . . END=2415061 GT:DP:GQ:MIN_DP:PL 0/0:53:68:53:0,68,936 +chrX 2415062 . T C, 745.64 . AS_QUALapprox=|753|0;AS_VarDP=20|27|0;BaseQRankSum=-0.689;DP=50;MQRankSum=0.000;QUALapprox=753;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=-0.054;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:20,27,0:47:99:753,0,530,812,610,1423:9,11,13,14 +chrX 2415063 . A . . END=2416174 GT:DP:GQ:MIN_DP:PL 0/0:43:41:43:0,41,897 +chrX 2416175 . C T, 554.64 . AS_QUALapprox=|562|0;AS_VarDP=15|21|0;BaseQRankSum=-1.591;DP=37;MQRankSum=0.000;QUALapprox=562;RAW_GT_COUNT=0,1,0;RAW_MQandDP=133200,37;ReadPosRankSum=-1.284;VarDP=36 GT:AD:DP:GQ:PL:SB 0/1:15,21,0:36:99:562,0,402,607,465,1072:9,6,12,9 +chrX 2416176 . A . . END=2416891 GT:DP:GQ:MIN_DP:PL 0/0:59:69:59:0,69,1036 +chrX 2416892 . T TA, 746.60 . AS_QUALapprox=|754|0;AS_VarDP=29|23|0;BaseQRankSum=0.778;DP=54;MQRankSum=0.000;QUALapprox=754;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=0.323;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:29,23,0:52:99:754,0,1000,841,1069,1911:14,15,13,10 +chrX 2416893 . T . . END=2416941 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,118,1540 +chrX 2416942 . T C, 618.64 . AS_QUALapprox=|626|0;AS_VarDP=26|25|0;BaseQRankSum=-1.626;DP=51;MQRankSum=0.000;QUALapprox=626;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-0.405;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:26,25,0:51:99:626,0,731,704,806,1510:13,13,14,11 +chrX 2416943 . A . . END=2417145 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 2417146 . G A, 858.64 . AS_QUALapprox=|866|0;AS_VarDP=24|31|0;BaseQRankSum=-0.187;DP=59;MQRankSum=0.000;QUALapprox=866;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-0.356;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:24,31,0:55:99:866,0,648,938,741,1679:8,16,16,15 +chrX 2417147 . G . . END=2417281 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 2417282 . A C, 906.64 . AS_QUALapprox=|914|0;AS_VarDP=24|33|0;BaseQRankSum=-0.485;DP=57;MQRankSum=0.000;QUALapprox=914;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=1.253;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:24,33,0:57:99:914,0,616,986,715,1701:15,9,17,16 +chrX 2417283 . A . . END=2417461 GT:DP:GQ:MIN_DP:PL 0/0:55:85:55:0,85,1254 +chrX 2417462 . G A, 650.64 . AS_QUALapprox=|658|0;AS_VarDP=26|26|0;BaseQRankSum=0.508;DP=53;MQRankSum=0.000;QUALapprox=658;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=-0.824;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:26,26,0:52:99:658,0,653,736,730,1466:15,11,14,12 +chrX 2417463 . G . . END=2418327 GT:DP:GQ:MIN_DP:PL 0/0:53:76:53:0,76,1358 +chrX 2418328 . G A, 744.64 . AS_QUALapprox=|752|0;AS_VarDP=24|27|0;BaseQRankSum=1.745;DP=54;MQRankSum=0.000;QUALapprox=752;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=1.595;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:24,27,0:51:99:752,0,616,823,697,1520:13,11,18,9 +chrX 2418329 . A . . END=2418920 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,113,1653 +chrX 2418921 . AC A, 1318.60 . AS_QUALapprox=|1326|0;AS_VarDP=28|34|0;BaseQRankSum=1.699;DP=63;MQRankSum=0.000;QUALapprox=1326;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=0.306;VarDP=62 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,34,0:62:99:0|1:2418921_AC_A:1326,0,1035,1411,1138,2548:2418921:12,16,21,13 +chrX 2418923 . C A, 1318.64 . AS_QUALapprox=|1326|0;AS_VarDP=28|34|0;BaseQRankSum=1.774;DP=64;MQRankSum=0.000;QUALapprox=1326;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=0.913;VarDP=62 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,34,0:62:99:0|1:2418921_AC_A:1326,0,1035,1411,1138,2548:2418921:12,16,21,13 +chrX 2418924 . C . . END=2419815 GT:DP:GQ:MIN_DP:PL 0/0:22:31:20:0,31,596 +chrX 2419816 . T . . END=2419816 GT:DP:GQ:MIN_DP:PL 0/0:22:6:22:0,6,524 +chrX 2419817 . G . . END=2419817 GT:DP:GQ:MIN_DP:PL 0/0:26:72:26:0,72,1080 +chrX 2419818 . T . . END=2419818 GT:DP:GQ:MIN_DP:PL 0/0:24:0:24:0,0,457 +chrX 2419819 . G . . END=2419822 GT:DP:GQ:MIN_DP:PL 0/0:26:69:26:0,69,1035 +chrX 2419823 . T . . END=2419823 GT:DP:GQ:MIN_DP:PL 0/0:24:12:24:0,12,512 +chrX 2419824 . G . . END=2419891 GT:DP:GQ:MIN_DP:PL 0/0:43:50:43:0,50,620 +chrX 2419892 . A G, 439.64 . AS_QUALapprox=|447|0;AS_VarDP=27|23|0;BaseQRankSum=-2.973;DP=51;MQRankSum=-1.040;QUALapprox=447;RAW_GT_COUNT=0,1,0;RAW_MQandDP=141691,51;ReadPosRankSum=0.185;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:27,23,0:50:99:447,0,742,528,809,1337:11,16,7,16 +chrX 2419893 . C . . END=2420150 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,109,1728 +chrX 2420151 . G C, 798.64 . AS_QUALapprox=|806|0;AS_VarDP=33|31|0;BaseQRankSum=0.957;DP=70;MQRankSum=1.000;QUALapprox=806;RAW_GT_COUNT=0,1,0;RAW_MQandDP=250000,70;ReadPosRankSum=-1.492;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:33,31,0:64:99:806,0,884,905,977,1882:15,18,16,15 +chrX 2420152 . T . . END=2420388 GT:DP:GQ:MIN_DP:PL 0/0:56:73:56:0,73,1479 +chrX 2420389 . T . . END=2420389 GT:DP:GQ:MIN_DP:PL 0/0:51:9:51:0,9,1324 +chrX 2420390 . A . . END=2420429 GT:DP:GQ:MIN_DP:PL 0/0:51:34:51:0,34,1354 +chrX 2420430 . T . . END=2420430 GT:DP:GQ:MIN_DP:PL 0/0:50:0:50:0,0,1371 +chrX 2420431 . A . . END=2420615 GT:DP:GQ:MIN_DP:PL 0/0:50:31:49:0,31,1390 +chrX 2420616 . T . . END=2420616 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,1215 +chrX 2420617 . C . . END=2420810 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,99,1420 +chrX 2420811 . T G, 918.64 . AS_QUALapprox=|926|0;AS_VarDP=34|34|0;BaseQRankSum=2.339;DP=70;MQRankSum=0.000;QUALapprox=926;RAW_GT_COUNT=0,1,0;RAW_MQandDP=252000,70;ReadPosRankSum=1.117;VarDP=68 GT:AD:DP:GQ:PL:SB 0/1:34,34,0:68:99:926,0,754,1025,856,1881:15,19,22,12 +chrX 2420812 . A . . END=2420854 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 2420855 . G A, 922.64 . AS_QUALapprox=|930|0;AS_VarDP=30|34|0;BaseQRankSum=0.626;DP=68;MQRankSum=0.000;QUALapprox=930;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=0.734;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:30,34,0:64:99:930,0,766,1020,868,1887:12,18,21,13 +chrX 2420856 . C . . END=2421061 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,104,1686 +chrX 2421062 . T C, 927.64 . AS_QUALapprox=|935|0;AS_VarDP=28|34|0;BaseQRankSum=-1.131;DP=64;MQRankSum=0.000;QUALapprox=935;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=-0.050;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:28,34,0:62:99:935,0,752,1018,854,1873:14,14,17,17 +chrX 2421063 . G . . END=2421075 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 2421076 . C G, 931.64 . AS_QUALapprox=|939|0;AS_VarDP=27|34|0;BaseQRankSum=-0.626;DP=63;MQRankSum=0.000;QUALapprox=939;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=0.320;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:27,34,0:61:99:939,0,710,1020,813,1832:16,11,19,15 +chrX 2421077 . A . . END=2421649 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,101,1529 +chrX 2421650 . A G, 1036.64 . AS_QUALapprox=|1044|0;AS_VarDP=23|38|0;BaseQRankSum=-1.452;DP=64;MQRankSum=1.319;QUALapprox=1044;RAW_GT_COUNT=0,1,0;RAW_MQandDP=228400,64;ReadPosRankSum=0.715;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:23,38,0:61:99:1044,0,596,1113,710,1824:11,12,17,21 +chrX 2421651 . A . . END=2421768 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 2421769 . C T, 1054.64 . AS_QUALapprox=|1062|0;AS_VarDP=31|39|0;BaseQRankSum=2.636;DP=70;MQRankSum=0.000;QUALapprox=1062;RAW_GT_COUNT=0,1,0;RAW_MQandDP=252000,70;ReadPosRankSum=-0.497;VarDP=70 GT:AD:DP:GQ:PL:SB 0/1:31,39,0:70:99:1062,0,704,1154,820,1973:19,12,17,22 +chrX 2421770 . G . . END=2421910 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 2421911 . G C, 1116.64 . AS_QUALapprox=|1124|0;AS_VarDP=24|40|0;BaseQRankSum=1.002;DP=66;MQRankSum=0.000;QUALapprox=1124;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=-1.817;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:24,40,0:64:99:1124,0,567,1195,687,1883:13,11,26,14 +chrX 2421912 . T . . END=2421961 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 2421962 . C T, 903.64 . AS_QUALapprox=|911|0;AS_VarDP=28|34|0;BaseQRankSum=0.731;DP=65;MQRankSum=0.000;QUALapprox=911;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=2.243;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:28,34,0:62:99:911,0,691,995,793,1788:15,13,21,13 +chrX 2421963 . C . . END=2422177 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 2422178 . A G, 929.64 . AS_QUALapprox=|937|0;AS_VarDP=24|34|0;BaseQRankSum=0.404;DP=60;MQRankSum=0.000;QUALapprox=937;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=0.379;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:24,34,0:58:99:937,0,600,1010,702,1711:9,15,16,18 +chrX 2422179 . T . . END=2422379 GT:DP:GQ:MIN_DP:PL 0/0:56:85:56:0,85,1455 +chrX 2422380 . A G, 616.64 . AS_QUALapprox=|624|0;AS_VarDP=35|28|0;BaseQRankSum=-2.577;DP=65;MQRankSum=0.000;QUALapprox=624;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=0.173;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:35,28,0:63:99:624,0,968,729,1051,1781:24,11,14,14 +chrX 2422381 . G . . END=2423410 GT:DP:GQ:MIN_DP:PL 0/0:58:79:58:0,79,1095 +chrX 2423411 . CA C, 604.60 . AS_QUALapprox=|612|0;AS_VarDP=16|24|0;BaseQRankSum=-1.173;DP=46;MQRankSum=0.000;QUALapprox=612;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=1.767;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:16,24,0:40:99:612,0,365,661,437,1097:5,11,11,13 +chrX 2423413 . A . . END=2423484 GT:DP:GQ:MIN_DP:PL 0/0:50:96:50:0,96,1250 +chrX 2423485 . A G, 720.64 . AS_QUALapprox=|728|0;AS_VarDP=27|28|0;BaseQRankSum=0.886;DP=57;MQRankSum=0.000;QUALapprox=728;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=0.834;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:27,28,0:55:99:728,0,679,809,762,1571:13,14,13,15 +chrX 2423486 . T . . END=2423666 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 2423667 . G A, 1129.64 . AS_QUALapprox=|1137|0;AS_VarDP=25|41|0;BaseQRankSum=0.282;DP=68;MQRankSum=0.000;QUALapprox=1137;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=1.924;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:25,41,0:66:99:1137,0,596,1212,719,1931:17,8,22,19 +chrX 2423668 . T . . END=2423900 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 2423901 . C T, 817.64 . AS_QUALapprox=|825|0;AS_VarDP=32|32|0;BaseQRankSum=-0.218;DP=67;MQRankSum=0.000;QUALapprox=825;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=-1.316;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:32,32,0:64:99:825,0,819,920,915,1835:17,15,10,22 +chrX 2423902 . G . . END=2424520 GT:DP:GQ:MIN_DP:PL 0/0:64:93:64:0,93,1430 +chrX 2424521 . T C, 1148.64 . AS_QUALapprox=|1156|0;AS_VarDP=29|44|0;BaseQRankSum=-1.162;DP=74;MQRankSum=0.000;QUALapprox=1156;RAW_GT_COUNT=0,1,0;RAW_MQandDP=266400,74;ReadPosRankSum=-0.722;VarDP=73 GT:AD:DP:GQ:PL:SB 0/1:29,44,0:73:99:1156,0,735,1243,866,2109:15,14,17,27 +chrX 2424522 . T . . END=2424814 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 2424815 . G A, 818.64 . AS_QUALapprox=|826|0;AS_VarDP=32|30|0;BaseQRankSum=0.321;DP=66;MQRankSum=0.000;QUALapprox=826;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=0.972;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:32,30,0:62:99:826,0,886,923,976,1899:18,14,15,15 +chrX 2424816 . A . . END=2425141 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,108,1484 +chrX 2425142 . G GA, 627.60 . AS_QUALapprox=|635|0;AS_VarDP=26|31|0;BaseQRankSum=-0.889;DP=67;MQRankSum=1.127;QUALapprox=635;RAW_GT_COUNT=0,1,0;RAW_MQandDP=239625,67;ReadPosRankSum=-0.264;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:26,31,0:57:99:635,0,490,713,583,1296:12,14,16,15 +chrX 2425143 . A . . END=2425412 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,108,1390 +chrX 2425413 . T A, 951.64 . AS_QUALapprox=|959|0;AS_VarDP=23|33|0;BaseQRankSum=0.429;DP=57;MQRankSum=0.000;QUALapprox=959;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-0.267;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:23,33,0:56:99:959,0,596,1028,696,1724:14,9,16,17 +chrX 2425414 . T . . END=2425571 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 2425572 . A G, 807.64 . AS_QUALapprox=|815|0;AS_VarDP=21|30|0;BaseQRankSum=-0.125;DP=54;MQRankSum=0.000;QUALapprox=815;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=0.498;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:21,30,0:51:99:815,0,537,878,627,1504:6,15,13,17 +chrX 2425573 . G . . END=2426502 GT:DP:GQ:MIN_DP:PL 0/0:59:63:59:0,63,1144 +chrX 2426503 . A . . END=2426503 GT:DP:GQ:MIN_DP:PL 0/0:49:6:49:0,6,1109 +chrX 2426504 . T . . END=2428452 GT:DP:GQ:MIN_DP:PL 0/0:46:30:43:0,30,1056 +chrX 2428453 . G A, 652.64 . AS_QUALapprox=|660|0;AS_VarDP=35|26|0;BaseQRankSum=0.656;DP=63;MQRankSum=-1.127;QUALapprox=660;RAW_GT_COUNT=0,1,0;RAW_MQandDP=224800,63;ReadPosRankSum=-1.875;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:35,26,0:61:99:660,0,889,764,967,1731:19,16,13,13 +chrX 2428454 . G . . END=2429046 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,112,1429 +chrX 2429047 . G A, 639.64 . AS_QUALapprox=|647|0;AS_VarDP=29|27|0;BaseQRankSum=1.018;DP=59;MQRankSum=0.000;QUALapprox=647;RAW_GT_COUNT=0,1,0;RAW_MQandDP=211104,59;ReadPosRankSum=0.312;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:29,27,0:56:99:647,0,671,734,751,1484:13,16,17,10 +chrX 2429048 . G . . END=2429170 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 2429171 . G A, 526.64 . AS_QUALapprox=|534|0;AS_VarDP=29|23|0;BaseQRankSum=-1.032;DP=55;MQRankSum=0.000;QUALapprox=534;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=1.226;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:29,23,0:52:99:534,0,760,621,829,1449:15,14,11,12 +chrX 2429172 . A . . END=2429204 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 2429205 . T A, 741.64 . AS_QUALapprox=|749|0;AS_VarDP=22|28|0;BaseQRankSum=0.564;DP=51;MQRankSum=0.000;QUALapprox=749;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=0.460;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:22,28,0:50:99:749,0,524,814,608,1422:14,8,13,15 +chrX 2429206 . A . . END=2429450 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,118,1593 +chrX 2429451 . CT C, 532.60 . AS_QUALapprox=|540|0;AS_VarDP=29|27|0;BaseQRankSum=1.331;DP=68;MQRankSum=0.000;QUALapprox=540;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241876,68;ReadPosRankSum=-0.484;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:29,27,0:56:99:540,0,577,627,658,1286:15,14,13,14 +chrX 2429453 . T . . END=2429477 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 2429478 . T C, 788.64 . AS_QUALapprox=|796|0;AS_VarDP=30|31|0;BaseQRankSum=0.619;DP=62;MQRankSum=0.000;QUALapprox=796;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=-0.527;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:30,31,0:61:99:796,0,741,885,833,1718:12,18,16,15 +chrX 2429479 . A . . END=2429625 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 2429626 . ATT A, 1049.60 . AS_QUALapprox=|1057|0;AS_VarDP=18|30|0;BaseQRankSum=2.696;DP=51;MQRankSum=0.000;QUALapprox=1057;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-0.543;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:18,30,0:48:99:1057,0,554,1111,644,1755:5,13,15,15 +chrX 2429629 . T . . END=2430194 GT:DP:GQ:MIN_DP:PL 0/0:58:82:58:0,82,1286 +chrX 2430195 . C T, 670.64 . AS_QUALapprox=|678|0;AS_VarDP=28|26|0;BaseQRankSum=1.593;DP=57;MQRankSum=0.000;QUALapprox=678;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=0.303;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:28,26,0:54:99:678,0,672,761,749,1510:18,10,17,9 +chrX 2430196 . G . . END=2430257 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,102,1405 +chrX 2430258 . C CA, 250.60 . AS_QUALapprox=|258|0;AS_VarDP=14|18|0;BaseQRankSum=0.686;DP=58;MQRankSum=-0.819;QUALapprox=258;RAW_GT_COUNT=0,1,0;RAW_MQandDP=204800,58;ReadPosRankSum=0.057;VarDP=32 GT:AD:DP:GQ:PL:SB 0/1:14,18,0:32:99:258,0,231,300,282,582:8,6,10,8 +chrX 2430259 . A . . END=2430728 GT:DP:GQ:MIN_DP:PL 0/0:64:91:64:0,91,1743 +chrX 2430729 . T C, 863.64 . AS_QUALapprox=|871|0;AS_VarDP=23|34|0;BaseQRankSum=-2.405;DP=60;MQRankSum=0.000;QUALapprox=871;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=0.065;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:23,34,0:57:99:871,0,604,939,706,1645:11,12,23,11 +chrX 2430730 . G . . END=2431325 GT:DP:GQ:MIN_DP:PL 0/0:44:36:40:0,36,1048 +chrX 2431326 . C A,CAA, 475.60 . AS_QUALapprox=|0|483|0;AS_VarDP=13|1|17|0;BaseQRankSum=-1.513;DP=41;MQRankSum=0.000;QUALapprox=483;RAW_GT_COUNT=0,1,0;RAW_MQandDP=144729,41;ReadPosRankSum=0.881;VarDP=31 GT:AD:DP:GQ:PL:SB 0/2:13,1,17,0:31:99:483,518,1138,0,361,356,551,1036,412,1051:8,5,10,8 +chrX 2431327 . A . . END=2431343 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,102,1530 +chrX 2431344 . CA C, 539.60 . AS_QUALapprox=|547|0;AS_VarDP=18|22|0;BaseQRankSum=-1.472;DP=46;MQRankSum=0.000;QUALapprox=547;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=0.748;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:18,22,0:40:99:547,0,417,601,484,1085:11,7,13,9 +chrX 2431346 . A . . END=2431801 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 2431802 . G A, 675.64 . AS_QUALapprox=|683|0;AS_VarDP=27|25|0;BaseQRankSum=0.659;DP=55;MQRankSum=0.000;QUALapprox=683;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-0.916;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:27,25,0:52:99:683,0,732,764,807,1571:16,11,11,14 +chrX 2431803 . T . . END=2435460 GT:DP:GQ:MIN_DP:PL 0/0:58:68:58:0,68,1136 +chrX 2435461 . GA G, 425.60 . AS_QUALapprox=|433|0;AS_VarDP=27|23|0;BaseQRankSum=1.869;DP=54;MQRankSum=0.000;QUALapprox=433;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=1.404;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:27,23,0:50:99:433,0,505,514,574,1088:15,12,16,7 +chrX 2435463 . A . . END=2435697 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 2435698 . A G, 818.64 . AS_QUALapprox=|826|0;AS_VarDP=36|31|0;BaseQRankSum=-0.585;DP=71;MQRankSum=0.958;QUALapprox=826;RAW_GT_COUNT=0,1,0;RAW_MQandDP=252225,71;ReadPosRankSum=-0.447;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:36,31,0:67:99:826,0,1034,934,1128,2062:17,19,14,17 +chrX 2435699 . A . . END=2436002 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 2436003 . A G, 725.64 . AS_QUALapprox=|733|0;AS_VarDP=28|27|0;BaseQRankSum=0.948;DP=57;MQRankSum=0.000;QUALapprox=733;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=0.505;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:28,27,0:55:99:733,0,738,817,819,1636:17,11,11,16 +chrX 2436004 . T . . END=2436208 GT:DP:GQ:MIN_DP:PL 0/0:52:33:50:0,33,1351 +chrX 2436209 . C T, 493.64 . AS_QUALapprox=|501|0;AS_VarDP=21|20|0;BaseQRankSum=-0.998;DP=42;MQRankSum=1.025;QUALapprox=501;RAW_GT_COUNT=0,1,0;RAW_MQandDP=148176,42;ReadPosRankSum=-0.457;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:21,20,0:41:99:501,0,587,565,646,1211:12,9,6,14 +chrX 2436210 . A . . END=2436274 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,99,1232 +chrX 2436275 . G A, 486.64 . AS_QUALapprox=|494|0;AS_VarDP=25|19|0;BaseQRankSum=0.875;DP=45;MQRankSum=0.000;QUALapprox=494;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=0.438;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:25,19,0:44:99:494,0,658,569,714,1283:19,6,15,4 +chrX 2436276 . T . . END=2436460 GT:DP:GQ:MIN_DP:PL 0/0:50:73:50:0,73,1216 +chrX 2436461 . A ATATTAT,ATATTATTAT, 456.60 . AS_QUALapprox=|464|51|0;AS_VarDP=13|10|0|0;BaseQRankSum=-1.109;DP=41;MQRankSum=0.000;QUALapprox=464;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147600,41;ReadPosRankSum=-2.079;VarDP=23 GT:AD:DP:GQ:PL:SB 0/1:13,10,0,0:23:99:464,0,511,413,542,952,462,547,959,1001:6,7,5,5 +chrX 2436462 . T . . END=2436496 GT:DP:GQ:MIN_DP:PL 0/0:38:66:38:0,66,990 +chrX 2436497 . TTAC T, 458.60 . AS_QUALapprox=|466|0;AS_VarDP=13|12|0;BaseQRankSum=1.041;DP=41;MQRankSum=0.000;QUALapprox=466;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147600,41;ReadPosRankSum=-0.681;VarDP=25 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:13,12,0:25:99:0|1:2436497_TTAC_T:466,0,474,505,511,1016:2436497:6,7,5,7 +chrX 2436500 . C *,T, 433.04 . AS_QUALapprox=|0|839|0;AS_VarDP=1|12|10|0;BaseQRankSum=3.479;DP=41;MQRankSum=0.000;QUALapprox=1350;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147600,41;ReadPosRankSum=-1.436;VarDP=23 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 2|1:1,12,10,0:23:99:1|0:2436497_TTAC_T:1350,443,464,534,0,511,1176,500,567,1205:2436497:0,1,10,12 +chrX 2436501 . T . . END=2436702 GT:DP:GQ:MIN_DP:PL 0/0:52:45:52:0,45,1237 +chrX 2436703 . T C, 514.64 . AS_QUALapprox=|522|0;AS_VarDP=26|20|0;BaseQRankSum=-0.295;DP=46;MQRankSum=0.000;QUALapprox=522;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=-0.399;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:26,20,0:46:99:522,0,746,600,806,1406:10,16,12,8 +chrX 2436704 . T . . END=2437134 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,109,1441 +chrX 2437135 . T C, 625.64 . AS_QUALapprox=|633|0;AS_VarDP=29|23|0;BaseQRankSum=1.448;DP=52;MQRankSum=-1.084;QUALapprox=633;RAW_GT_COUNT=0,1,0;RAW_MQandDP=185200,52;ReadPosRankSum=-0.212;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:29,23,0:52:99:633,0,802,720,871,1591:17,12,12,11 +chrX 2437136 . T . . END=2437288 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 2437289 . A G, 1821.06 . AS_QUALapprox=|1835|0;AS_VarDP=0|60|0;DP=62;QUALapprox=1835;RAW_GT_COUNT=0,0,1;RAW_MQandDP=221200,62;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:1835,179,0,1835,179,1835:0,0,28,32 +chrX 2437290 . T . . END=2437618 GT:DP:GQ:MIN_DP:PL 0/0:64:53:64:0,53,1495 +chrX 2437619 . AG A, 1740.03 . AS_QUALapprox=|1754|0;AS_VarDP=0|47|0;DP=50;QUALapprox=1754;RAW_GT_COUNT=0,0,1;RAW_MQandDP=179881,50;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1754,141,0,1754,141,1754:0,0,23,24 +chrX 2437621 . A . . END=2437695 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,105,1519 +chrX 2437696 . AGAGTGTGTGTGTGTGTGT A,AGTGTGT, 452.60 . AS_QUALapprox=|0|460|0;AS_VarDP=21|0|18|0;BaseQRankSum=1.078;DP=64;MQRankSum=1.363;QUALapprox=460;RAW_GT_COUNT=0,1,0;RAW_MQandDP=228281,64;ReadPosRankSum=0.028;VarDP=39 GT:AD:DP:GQ:PL:SB 0/2:21,0,18,0:39:99:460,604,1789,0,648,952,612,1563,864,1671:12,9,4,14 +chrX 2437698 . AGTGTGTGTGTGTGTGT *,A,AGTGTGT, 404.01 . AS_QUALapprox=|0|798|344|0;AS_VarDP=0|18|13|0|0;DP=63;QUALapprox=1750;RAW_GT_COUNT=0,0,1;RAW_MQandDP=224681,63;VarDP=31 GT:AD:DP:GQ:PL:SB 1/2:0,18,13,0,0:31:99:1750,414,473,952,0,1202,1406,420,782,1522,1766,436,1140,1586,1944:0,0,10,21 +chrX 2437715 . G . . END=2438006 GT:DP:GQ:MIN_DP:PL 0/0:59:82:59:0,82,1499 +chrX 2438007 . G . . END=2438007 GT:DP:GQ:MIN_DP:PL 0/0:55:0:55:0,0,1474 +chrX 2438008 . G GAA, 1521.03 . AS_QUALapprox=|1535|0;AS_VarDP=0|43|0;DP=47;QUALapprox=1535;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;VarDP=43 GT:AD:DP:GQ:PL:SB 1/1:0,43,0:43:99:1535,129,0,1535,129,1536:0,0,18,25 +chrX 2438009 . A . . END=2438177 GT:DP:GQ:MIN_DP:PL 0/0:57:72:57:0,72,1397 +chrX 2438178 . GA G, 1131.03 . AS_QUALapprox=|1145|0;AS_VarDP=0|47|0;DP=68;QUALapprox=1145;RAW_GT_COUNT=0,0,1;RAW_MQandDP=242800,68;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1145,141,0,1145,141,1145:0,0,14,33 +chrX 2438180 . A . . END=2438193 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 2438194 . A . . END=2438194 GT:DP:GQ:MIN_DP:PL 0/0:64:0:64:0,0,1716 +chrX 2438195 . C . . END=2438305 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,116,1800 +chrX 2438306 . T TACACACACAC,C, 697.60 . AS_QUALapprox=|705|32|0;AS_VarDP=26|16|0|0;BaseQRankSum=-0.474;DP=56;MQRankSum=0.000;QUALapprox=705;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=0.233;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:26,16,0,0:42:99:705,0,1025,673,1104,2173,808,1112,1986,2088:18,8,8,8 +chrX 2438307 . A . . END=2438327 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 2438328 . T . . END=2438328 GT:DP:GQ:MIN_DP:PL 0/0:56:0:56:0,0,1480 +chrX 2438329 . A . . END=2438331 GT:DP:GQ:MIN_DP:PL 0/0:56:36:55:0,36,1533 +chrX 2438332 . T . . END=2438332 GT:DP:GQ:MIN_DP:PL 0/0:57:0:57:0,0,1544 +chrX 2438333 . A . . END=2438333 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 2438334 . T . . END=2438335 GT:DP:GQ:MIN_DP:PL 0/0:58:0:58:0,0,1499 +chrX 2438336 . C . . END=2438445 GT:DP:GQ:MIN_DP:PL 0/0:60:41:60:0,41,1626 +chrX 2438446 . T G, 1785.06 . AS_QUALapprox=|1799|0;AS_VarDP=0|57|0;DP=60;QUALapprox=1799;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1799,170,0,1799,170,1799:0,0,30,27 +chrX 2438447 . G . . END=2438671 GT:DP:GQ:MIN_DP:PL 0/0:56:37:52:0,37,1345 +chrX 2438672 . T TA,TAA, 1155.02 . AS_QUALapprox=|703|886|0;AS_VarDP=0|17|26|0;DP=53;QUALapprox=1172;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187890,53;VarDP=43 GT:AD:DP:GQ:PL:SB 1/2:0,17,26,0:43:99:1172,590,469,370,0,286,1078,570,368,1027:0,0,17,26 +chrX 2438673 . A . . END=2438972 GT:DP:GQ:MIN_DP:PL 0/0:63:88:63:0,88,1597 +chrX 2438973 . T C, 1594.06 . AS_QUALapprox=|1608|0;AS_VarDP=0|48|0;DP=51;QUALapprox=1608;RAW_GT_COUNT=0,0,1;RAW_MQandDP=181600,51;VarDP=48 GT:AD:DP:GQ:PL:SB 1/1:0,48,0:48:99:1608,144,0,1608,144,1608:0,0,19,29 +chrX 2438974 . G . . END=2439515 GT:DP:GQ:MIN_DP:PL 0/0:52:68:52:0,68,1226 +chrX 2439516 . G A, 1680.06 . AS_QUALapprox=|1694|0;AS_VarDP=0|54|0;DP=58;QUALapprox=1694;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:1694,161,0,1694,161,1694:0,0,27,27 +chrX 2439517 . A . . END=2439877 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,116,1474 +chrX 2439878 . G T, 779.64 . AS_QUALapprox=|787|0;AS_VarDP=31|31|0;BaseQRankSum=-1.093;DP=62;MQRankSum=0.000;QUALapprox=787;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=0.415;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:31,31,0:62:99:787,0,848,880,940,1820:16,15,11,20 +chrX 2439879 . C . . END=2440098 GT:DP:GQ:MIN_DP:PL 0/0:58:94:58:0,94,1574 +chrX 2440099 . T A, 1829.06 . AS_QUALapprox=|1843|0;AS_VarDP=0|56|0;DP=56;QUALapprox=1843;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1843,168,0,1843,168,1843:0,0,30,26 +chrX 2440100 . G . . END=2442047 GT:DP:GQ:MIN_DP:PL 0/0:56:64:56:0,64,1116 +chrX 2442048 . T C, 2308.06 . AS_QUALapprox=|2322|0;AS_VarDP=0|59|0;DP=62;QUALapprox=2322;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=59 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,59,0:59:99:0|1:2442048_T_C:2322,177,0,2322,177,2322:2442048:0,0,29,30 +chrX 2442049 . G . . END=2442061 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 2442062 . A G, 1076.64 . AS_QUALapprox=|1084|0;AS_VarDP=25|39|0;BaseQRankSum=-0.274;DP=66;MQRankSum=0.000;QUALapprox=1084;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=-0.303;VarDP=64 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,39,0:64:99:0|1:2442048_T_C:1084,0,606,1158,723,1881:2442048:12,13,21,18 +chrX 2442063 . T . . END=2442259 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 2442260 . T C, 1800.06 . AS_QUALapprox=|1814|0;AS_VarDP=0|57|0;DP=57;QUALapprox=1814;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1814,170,0,1814,170,1814:0,0,35,22 +chrX 2442261 . G . . END=2442699 GT:DP:GQ:MIN_DP:PL 0/0:56:98:56:0,98,1444 +chrX 2442700 . A G, 1628.06 . AS_QUALapprox=|1642|0;AS_VarDP=0|51|0;DP=53;QUALapprox=1642;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1642,152,0,1642,152,1642:0,0,22,29 +chrX 2442701 . T . . END=2443424 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,112,1800 +chrX 2443425 . G C, 731.64 . AS_QUALapprox=|739|0;AS_VarDP=33|27|0;BaseQRankSum=2.215;DP=62;MQRankSum=0.000;QUALapprox=739;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=1.516;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:33,27,0:60:99:739,0,850,837,932,1769:16,17,13,14 +chrX 2443426 . C . . END=2444009 GT:DP:GQ:MIN_DP:PL 0/0:57:62:57:0,62,1429 +chrX 2444010 . G A,GA, 290.60 . AS_QUALapprox=|70|298|0;AS_VarDP=19|7|16|0;BaseQRankSum=-0.539;DP=57;MQRankSum=-1.860;QUALapprox=298;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198009,57;ReadPosRankSum=-2.086;VarDP=42 GT:AD:DP:GQ:PL:SB 0/2:19,7,16,0:42:99:298,228,1100,0,311,336,380,909,436,990:10,9,10,13 +chrX 2444011 . A . . END=2444457 GT:DP:GQ:MIN_DP:PL 0/0:66:75:66:0,75,1769 +chrX 2444458 . T C, 1443.06 . AS_QUALapprox=|1457|0;AS_VarDP=0|47|0;DP=49;QUALapprox=1457;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1457,140,0,1457,140,1457:0,0,18,29 +chrX 2444459 . G . . END=2445486 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,105,1391 +chrX 2445487 . T A, 1650.06 . AS_QUALapprox=|1664|0;AS_VarDP=1|54|0;BaseQRankSum=-0.510;DP=57;MQRankSum=0.000;QUALapprox=1664;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;ReadPosRankSum=0.221;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:1,54,0:55:99:1664,129,0,1667,161,1699:0,1,31,23 +chrX 2445488 . A . . END=2445559 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 2445560 . C T, 2278.06 . AS_QUALapprox=|2292|0;AS_VarDP=1|73|0;BaseQRankSum=2.234;DP=76;MQRankSum=0.000;QUALapprox=2292;RAW_GT_COUNT=0,0,1;RAW_MQandDP=273600,76;ReadPosRankSum=-1.241;VarDP=74 GT:AD:DP:GQ:PL:SB 1/1:1,73,0:74:99:2292,211,0,2295,218,2302:1,0,41,32 +chrX 2445561 . A . . END=2445873 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,113,1681 +chrX 2445874 . T G, 821.64 . AS_QUALapprox=|829|0;AS_VarDP=23|32|0;BaseQRankSum=-0.032;DP=60;MQRankSum=-1.184;QUALapprox=829;RAW_GT_COUNT=0,1,0;RAW_MQandDP=211050,60;ReadPosRankSum=2.083;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:23,32,0:55:99:829,0,550,897,645,1543:6,17,10,22 +chrX 2445875 . C . . END=2445914 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 2445915 . C A, 990.64 . AS_QUALapprox=|998|0;AS_VarDP=26|37|0;BaseQRankSum=-0.867;DP=65;MQRankSum=0.299;QUALapprox=998;RAW_GT_COUNT=0,1,0;RAW_MQandDP=229050,65;ReadPosRankSum=-0.419;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:26,37,0:63:99:998,0,652,1076,763,1839:7,19,17,20 +chrX 2445916 . A . . END=2446093 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,103,1800 +chrX 2446094 . G C, 570.64 . AS_QUALapprox=|578|0;AS_VarDP=25|24|0;BaseQRankSum=-1.704;DP=50;MQRankSum=0.000;QUALapprox=578;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=-0.990;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:25,24,0:49:99:578,0,698,653,769,1421:17,8,10,14 +chrX 2446095 . A . . END=2446338 GT:DP:GQ:MIN_DP:PL 0/0:58:88:58:0,88,1449 +chrX 2446339 . G A, 753.64 . AS_QUALapprox=|761|0;AS_VarDP=30|29|0;BaseQRankSum=0.546;DP=59;MQRankSum=0.000;QUALapprox=761;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-1.236;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:30,29,0:59:99:761,0,858,851,945,1796:19,11,20,9 +chrX 2446340 . C . . END=2446474 GT:DP:GQ:MIN_DP:PL 0/0:66:95:66:0,95,1674 +chrX 2446475 . G A, 671.64 . AS_QUALapprox=|679|0;AS_VarDP=28|27|0;BaseQRankSum=0.681;DP=57;MQRankSum=-0.982;QUALapprox=679;RAW_GT_COUNT=0,1,0;RAW_MQandDP=203121,57;ReadPosRankSum=-0.093;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:28,27,0:55:99:679,0,714,763,794,1557:12,16,14,13 +chrX 2446476 . T . . END=2446508 GT:DP:GQ:MIN_DP:PL 0/0:76:56:76:0,56,1800 +chrX 2446509 . G . . END=2446509 GT:DP:GQ:MIN_DP:PL 0/0:73:0:73:0,0,1931 +chrX 2446510 . A . . END=2446520 GT:DP:GQ:MIN_DP:PL 0/0:82:99:82:0,120,1800 +chrX 2446521 . C . . END=2446521 GT:DP:GQ:MIN_DP:PL 0/0:70:0:70:0,0,1459 +chrX 2446522 . A . . END=2446699 GT:DP:GQ:MIN_DP:PL 0/0:74:55:74:0,55,1800 +chrX 2446700 . T A, 43.64 . AS_QUALapprox=|51|0;AS_VarDP=55|9|0;BaseQRankSum=-3.429;DP=65;MQRankSum=-3.492;QUALapprox=51;RAW_GT_COUNT=0,1,0;RAW_MQandDP=231050,65;ReadPosRankSum=-0.386;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:55,9,0:64:51:51,0,1596,215,1621,1837:24,31,6,3 +chrX 2446701 . C . . END=2447768 GT:DP:GQ:MIN_DP:PL 0/0:60:23:59:0,23,1216 +chrX 2447769 . A G, 592.64 . AS_QUALapprox=|600|0;AS_VarDP=19|21|0;BaseQRankSum=2.222;DP=41;MQRankSum=-0.901;QUALapprox=600;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147249,41;ReadPosRankSum=-1.125;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:19,21,0:40:99:600,0,490,657,553,1210:11,8,9,12 +chrX 2447770 . A . . END=2447801 GT:DP:GQ:MIN_DP:PL 0/0:41:71:41:0,71,1191 +chrX 2447802 . G A, 931.64 . AS_QUALapprox=|939|0;AS_VarDP=25|26|0;BaseQRankSum=2.864;DP=51;MQRankSum=-2.962;QUALapprox=939;RAW_GT_COUNT=0,1,0;RAW_MQandDP=175623,51;ReadPosRankSum=0.052;VarDP=51 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,26,0:51:99:0|1:2447802_G_A:939,0,879,1015,957,1972:2447802:13,12,12,14 +chrX 2447803 . T . . END=2447821 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 2447822 . C T, 1073.64 . AS_QUALapprox=|1081|0;AS_VarDP=24|31|0;BaseQRankSum=1.130;DP=56;MQRankSum=-3.887;QUALapprox=1081;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183555,56;ReadPosRankSum=-0.691;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,31,0:55:99:0|1:2447802_G_A:1081,0,842,1153,935,2089:2447802:12,12,17,14 +chrX 2447823 . T . . END=2447870 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 2447871 . CTTCA C, 1273.60 . AS_QUALapprox=|1281|0;AS_VarDP=21|32|0;BaseQRankSum=0.771;DP=54;MQRankSum=-4.223;QUALapprox=1281;RAW_GT_COUNT=0,1,0;RAW_MQandDP=174955,54;ReadPosRankSum=0.150;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,32,0:53:99:0|1:2447871_CTTCA_C:1281,0,785,1344,882,2226:2447871:9,12,16,16 +chrX 2447876 . T . . END=2447877 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 2447878 . A G, 1272.64 . AS_QUALapprox=|1280|0;AS_VarDP=21|32|0;BaseQRankSum=0.988;DP=53;MQRankSum=-4.223;QUALapprox=1280;RAW_GT_COUNT=0,1,0;RAW_MQandDP=171355,53;ReadPosRankSum=0.555;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,32,0:53:99:0|1:2447871_CTTCA_C:1280,0,785,1344,882,2225:2447871:9,12,16,16 +chrX 2447879 . A . . END=2447886 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,119,1633 +chrX 2447887 . T G, 1231.64 . AS_QUALapprox=|1239|0;AS_VarDP=21|31|0;BaseQRankSum=-0.253;DP=53;MQRankSum=-4.306;QUALapprox=1239;RAW_GT_COUNT=0,1,0;RAW_MQandDP=171355,53;ReadPosRankSum=1.642;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,31,0:52:99:0|1:2447871_CTTCA_C:1239,0,778,1302,871,2173:2447871:9,12,16,15 +chrX 2447888 . C . . END=2447929 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 2447930 . T C, 941.64 . AS_QUALapprox=|949|0;AS_VarDP=29|35|0;BaseQRankSum=-0.031;DP=64;MQRankSum=-4.434;QUALapprox=949;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212955,64;ReadPosRankSum=0.904;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:29,35,0:64:99:949,0,766,1036,871,1907:17,12,18,17 +chrX 2447931 . A . . END=2448056 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,113,1594 +chrX 2448057 . G A, 1235.64 . AS_QUALapprox=|1243|0;AS_VarDP=26|32|0;BaseQRankSum=1.514;DP=59;MQRankSum=-0.867;QUALapprox=1243;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212281,59;ReadPosRankSum=0.756;VarDP=58 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,32,0:58:99:0|1:2448057_G_A:1243,0,943,1322,1040,2361:2448057:14,12,15,17 +chrX 2448058 . C . . END=2448061 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 2448062 . G A, 1176.64 . AS_QUALapprox=|1184|0;AS_VarDP=25|30|0;BaseQRankSum=1.435;DP=57;MQRankSum=-0.876;QUALapprox=1184;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205081,57;ReadPosRankSum=1.150;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,30,0:55:99:0|1:2448057_G_A:1184,0,928,1260,1018,2278:2448057:13,12,14,16 +chrX 2448063 . T . . END=2448371 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,110,1594 +chrX 2448372 . C G, 1170.64 . AS_QUALapprox=|1178|0;AS_VarDP=24|31|0;BaseQRankSum=2.176;DP=58;MQRankSum=-1.531;QUALapprox=1178;RAW_GT_COUNT=0,1,0;RAW_MQandDP=202362,58;ReadPosRankSum=0.096;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,31,0:55:99:0|1:2448372_C_G:1178,0,873,1251,966,2217:2448372:12,12,14,17 +chrX 2448373 . A . . END=2448393 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 2448394 . A T, 1150.64 . AS_QUALapprox=|1158|0;AS_VarDP=27|30|0;BaseQRankSum=0.550;DP=58;MQRankSum=-2.635;QUALapprox=1158;RAW_GT_COUNT=0,1,0;RAW_MQandDP=193461,58;ReadPosRankSum=1.553;VarDP=57 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,30,0:57:99:0|1:2448372_C_G:1158,0,1002,1239,1092,2331:2448372:15,12,15,15 +chrX 2448395 . T . . END=2448413 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 2448414 . C G, 1199.64 . AS_QUALapprox=|1207|0;AS_VarDP=22|32|0;BaseQRankSum=0.171;DP=57;MQRankSum=-2.845;QUALapprox=1207;RAW_GT_COUNT=0,1,0;RAW_MQandDP=181911,57;ReadPosRankSum=0.678;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,32,0:54:99:0|1:2448372_C_G:1207,0,816,1274,912,2186:2448372:14,8,14,18 +chrX 2448415 . A . . END=2448466 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,117,1296 +chrX 2448467 . A G, 882.64 . AS_QUALapprox=|890|0;AS_VarDP=21|23|0;BaseQRankSum=-0.809;DP=44;MQRankSum=-3.761;QUALapprox=890;RAW_GT_COUNT=0,1,0;RAW_MQandDP=134211,44;ReadPosRankSum=1.046;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,23,0:44:99:0|1:2448467_A_G:890,0,811,953,880,1833:2448467:15,6,11,12 +chrX 2448468 . T . . END=2448471 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,120,1800 +chrX 2448472 . G C, 850.64 . AS_QUALapprox=|858|0;AS_VarDP=21|22|0;BaseQRankSum=-0.573;DP=43;MQRankSum=-3.858;QUALapprox=858;RAW_GT_COUNT=0,1,0;RAW_MQandDP=130611,43;ReadPosRankSum=0.729;VarDP=43 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,22,0:43:99:0|1:2448467_A_G:858,0,814,922,880,1802:2448467:15,6,10,12 +chrX 2448473 . A . . END=2448505 GT:DP:GQ:MIN_DP:PL 0/0:37:84:37:0,84,1162 +chrX 2448506 . T C, 625.64 . AS_QUALapprox=|633|0;AS_VarDP=20|17|0;BaseQRankSum=-1.030;DP=37;MQRankSum=-4.392;QUALapprox=633;RAW_GT_COUNT=0,1,0;RAW_MQandDP=110113,37;ReadPosRankSum=-1.433;VarDP=37 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:20,17,0:37:99:0|1:2448506_T_C:633,0,778,693,830,1522:2448506:16,4,6,11 +chrX 2448507 . A . . END=2448512 GT:DP:GQ:MIN_DP:PL 0/0:36:90:36:0,90,1350 +chrX 2448513 . AAG A, 559.60 . AS_QUALapprox=|567|0;AS_VarDP=21|15|0;BaseQRankSum=1.284;DP=36;MQRankSum=-4.815;QUALapprox=567;RAW_GT_COUNT=0,1,0;RAW_MQandDP=106513,36;ReadPosRankSum=-2.101;VarDP=36 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,15,0:36:99:0|1:2448506_T_C:567,0,826,630,872,1501:2448506:16,5,6,9 +chrX 2448516 . G GAA, 562.60 . AS_QUALapprox=|570|0;AS_VarDP=20|15|0;BaseQRankSum=-0.166;DP=35;MQRankSum=-4.722;QUALapprox=570;RAW_GT_COUNT=0,1,0;RAW_MQandDP=102913,35;ReadPosRankSum=-2.137;VarDP=35 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:20,15,0:35:99:0|1:2448506_T_C:570,0,795,630,840,1470:2448506:16,4,6,9 +chrX 2448517 . T . . END=2448522 GT:DP:GQ:MIN_DP:PL 0/0:33:81:33:0,81,1215 +chrX 2448523 . G A, 481.64 . AS_QUALapprox=|489|0;AS_VarDP=19|13|0;BaseQRankSum=0.915;DP=32;MQRankSum=-5.029;QUALapprox=489;RAW_GT_COUNT=0,1,0;RAW_MQandDP=92113,32;ReadPosRankSum=-2.725;VarDP=32 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:19,13,0:32:99:0|1:2448506_T_C:489,0,759,546,798,1344:2448506:15,4,5,8 +chrX 2448524 . A . . END=2448530 GT:DP:GQ:MIN_DP:PL 0/0:30:78:30:0,78,1170 +chrX 2448531 . T A, 428.64 . AS_QUALapprox=|436|0;AS_VarDP=19|12|0;BaseQRankSum=0.830;DP=32;MQRankSum=-4.944;QUALapprox=436;RAW_GT_COUNT=0,1,0;RAW_MQandDP=94113,32;ReadPosRankSum=-2.090;VarDP=31 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:19,12,0:31:99:0|1:2448506_T_C:436,0,739,494,775,1268:2448506:15,4,5,7 +chrX 2448532 . A . . END=2448560 GT:DP:GQ:MIN_DP:PL 0/0:34:81:34:0,81,1186 +chrX 2448561 . G C, 457.64 . AS_QUALapprox=|465|0;AS_VarDP=27|13|0;BaseQRankSum=1.422;DP=40;MQRankSum=-3.372;QUALapprox=465;RAW_GT_COUNT=0,1,0;RAW_MQandDP=135764,40;ReadPosRankSum=-0.641;VarDP=40 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,13,0:40:99:0|1:2448561_G_C:465,0,1095,546,1134,1680:2448561:15,12,7,6 +chrX 2448562 . A . . END=2448562 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,108,1620 +chrX 2448563 . T A, 457.64 . AS_QUALapprox=|465|0;AS_VarDP=27|13|0;BaseQRankSum=1.470;DP=40;MQRankSum=-3.372;QUALapprox=465;RAW_GT_COUNT=0,1,0;RAW_MQandDP=135764,40;ReadPosRankSum=-0.318;VarDP=40 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,13,0:40:99:0|1:2448561_G_C:465,0,1095,546,1134,1680:2448561:15,12,7,6 +chrX 2448564 . T . . END=2448570 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,111,1665 +chrX 2448571 . G A, 487.64 . AS_QUALapprox=|495|0;AS_VarDP=31|14|0;BaseQRankSum=1.012;DP=45;MQRankSum=-2.608;QUALapprox=495;RAW_GT_COUNT=0,1,0;RAW_MQandDP=157764,45;ReadPosRankSum=0.227;VarDP=45 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:31,14,0:45:99:0|1:2448561_G_C:495,0,1260,588,1302,1890:2448561:17,14,8,6 +chrX 2448572 . T . . END=2448575 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,120,1800 +chrX 2448576 . T A, 487.64 . AS_QUALapprox=|495|0;AS_VarDP=31|14|0;BaseQRankSum=0.539;DP=45;MQRankSum=-2.608;QUALapprox=495;RAW_GT_COUNT=0,1,0;RAW_MQandDP=157764,45;ReadPosRankSum=0.871;VarDP=45 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:31,14,0:45:99:0|1:2448561_G_C:495,0,1260,588,1302,1890:2448561:17,14,8,6 +chrX 2448577 . A . . END=2448582 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,120,1800 +chrX 2448583 . T C, 553.64 . AS_QUALapprox=|561|0;AS_VarDP=30|16|0;BaseQRankSum=-1.302;DP=46;MQRankSum=-2.398;QUALapprox=561;RAW_GT_COUNT=0,1,0;RAW_MQandDP=161364,46;ReadPosRankSum=0.427;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:30,16,0:46:99:0|1:2448561_G_C:561,0,1212,651,1260,1911:2448561:16,14,10,6 +chrX 2448584 . T . . END=2449044 GT:DP:GQ:MIN_DP:PL 0/0:55:69:55:0,69,1389 +chrX 2449045 . T C, 445.64 . AS_QUALapprox=|453|0;AS_VarDP=25|19|0;BaseQRankSum=-2.445;DP=45;MQRankSum=0.000;QUALapprox=453;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=-0.450;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:25,19,0:44:99:453,0,727,528,784,1312:12,13,6,13 +chrX 2449046 . G . . END=2449137 GT:DP:GQ:MIN_DP:PL 0/0:44:98:44:0,98,1274 +chrX 2449138 . A G, 438.64 . AS_QUALapprox=|446|0;AS_VarDP=29|13|0;BaseQRankSum=0.717;DP=42;MQRankSum=0.721;QUALapprox=446;RAW_GT_COUNT=0,1,0;RAW_MQandDP=150201,42;ReadPosRankSum=0.436;VarDP=42 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,13,0:42:99:0|1:2449138_A_G:446,0,1168,534,1207,1741:2449138:16,13,7,6 +chrX 2449139 . A . . END=2449140 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,114,1710 +chrX 2449141 . A G, 407.64 . AS_QUALapprox=|415|0;AS_VarDP=29|12|0;BaseQRankSum=1.039;DP=41;MQRankSum=0.697;QUALapprox=415;RAW_GT_COUNT=0,1,0;RAW_MQandDP=146601,41;ReadPosRankSum=1.204;VarDP=41 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,12,0:41:99:0|1:2449138_A_G:415,0,1171,502,1207,1709:2449138:16,13,7,5 +chrX 2449142 . T . . END=2449188 GT:DP:GQ:MIN_DP:PL 0/0:41:90:41:0,90,1181 +chrX 2449189 . CAA C, 486.60 . AS_QUALapprox=|494|0;AS_VarDP=23|17|0;BaseQRankSum=1.617;DP=44;MQRankSum=0.000;QUALapprox=494;RAW_GT_COUNT=0,1,0;RAW_MQandDP=156010,44;ReadPosRankSum=-0.991;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:23,17,0:40:99:494,0,675,563,726,1290:9,14,12,5 +chrX 2449192 . A . . END=2449217 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,100,1316 +chrX 2449218 . C T, 427.64 . AS_QUALapprox=|435|0;AS_VarDP=25|17|0;BaseQRankSum=-0.913;DP=46;MQRankSum=0.000;QUALapprox=435;RAW_GT_COUNT=0,1,0;RAW_MQandDP=164209,46;ReadPosRankSum=0.449;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:25,17,0:42:99:435,0,732,510,783,1293:8,17,13,4 +chrX 2449219 . A . . END=2449261 GT:DP:GQ:MIN_DP:PL 0/0:43:87:43:0,87,1251 +chrX 2449262 . A C, 490.64 . AS_QUALapprox=|498|0;AS_VarDP=28|19|0;BaseQRankSum=0.041;DP=48;MQRankSum=-2.996;QUALapprox=498;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162778,48;ReadPosRankSum=0.531;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:28,19,0:47:99:498,0,802,582,859,1441:13,15,12,7 +chrX 2449263 . T . . END=2449535 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,111,1539 +chrX 2449536 . C T, 851.64 . AS_QUALapprox=|859|0;AS_VarDP=21|30|0;BaseQRankSum=-0.037;DP=54;MQRankSum=0.000;QUALapprox=859;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=-0.479;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:21,30,0:51:99:859,0,576,922,667,1589:11,10,18,12 +chrX 2449537 . C . . END=2449652 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,110,1554 +chrX 2449653 . A G, 731.64 . AS_QUALapprox=|739|0;AS_VarDP=19|26|0;BaseQRankSum=0.985;DP=50;MQRankSum=0.000;QUALapprox=739;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=-0.885;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:19,26,0:45:99:739,0,455,795,533,1328:11,8,15,11 +chrX 2449654 . T . . END=2449748 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 2449749 . A G, 744.64 . AS_QUALapprox=|752|0;AS_VarDP=33|29|0;BaseQRankSum=-1.215;DP=65;MQRankSum=0.000;QUALapprox=752;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=0.600;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:33,29,0:62:99:752,0,921,851,1008,1859:19,14,13,16 +chrX 2449750 . C . . END=2449990 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 2449991 . A G, 651.64 . AS_QUALapprox=|659|0;AS_VarDP=28|25|0;BaseQRankSum=-0.534;DP=53;MQRankSum=0.000;QUALapprox=659;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=1.328;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:28,25,0:53:99:659,0,774,743,849,1592:15,13,12,13 +chrX 2449992 . A . . END=2450100 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,110,1539 +chrX 2450101 . A G, 504.64 . AS_QUALapprox=|512|0;AS_VarDP=27|19|0;BaseQRankSum=1.034;DP=49;MQRankSum=-1.148;QUALapprox=512;RAW_GT_COUNT=0,1,0;RAW_MQandDP=174736,49;ReadPosRankSum=-0.502;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:27,19,0:46:99:512,0,757,593,814,1406:15,12,7,12 +chrX 2450102 . A . . END=2450126 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,117,1755 +chrX 2450127 . CA C, 350.60 . AS_QUALapprox=|358|0;AS_VarDP=26|17|0;BaseQRankSum=0.414;DP=50;MQRankSum=-1.189;QUALapprox=358;RAW_GT_COUNT=0,1,0;RAW_MQandDP=178336,50;ReadPosRankSum=0.940;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:26,17,0:43:99:358,0,612,436,663,1099:14,12,7,10 +chrX 2450129 . A . . END=2450149 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,119,1448 +chrX 2450150 . CAATA C, 490.60 . AS_QUALapprox=|498|0;AS_VarDP=30|14|0;BaseQRankSum=2.172;DP=54;MQRankSum=0.000;QUALapprox=498;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=1.775;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:30,14,0:44:99:498,0,1192,588,1235,1823:13,17,7,7 +chrX 2450155 . A . . END=2450231 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,117,1578 +chrX 2450232 . G A, 688.64 . AS_QUALapprox=|696|0;AS_VarDP=26|25|0;BaseQRankSum=1.169;DP=52;MQRankSum=0.000;QUALapprox=696;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=-0.886;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:26,25,0:51:99:696,0,699,774,774,1548:11,15,14,11 +chrX 2450233 . A . . END=2450887 GT:DP:GQ:MIN_DP:PL 0/0:56:82:56:0,82,1200 +chrX 2450888 . A G, 485.64 . AS_QUALapprox=|493|0;AS_VarDP=25|19|0;BaseQRankSum=1.302;DP=45;MQRankSum=0.000;QUALapprox=493;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=1.292;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:25,19,0:44:99:493,0,667,569,724,1292:12,13,9,10 +chrX 2450889 . T . . END=2450920 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,120,1800 +chrX 2450921 . T C, 518.64 . AS_QUALapprox=|526|0;AS_VarDP=27|21|0;BaseQRankSum=0.092;DP=51;MQRankSum=0.000;QUALapprox=526;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-0.499;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:27,21,0:48:99:526,0,714,607,777,1383:11,16,10,11 +chrX 2450922 . G . . END=2451232 GT:DP:GQ:MIN_DP:PL 0/0:51:41:51:0,41,862 +chrX 2451233 . T TA, 213.60 . AS_QUALapprox=|221|0;AS_VarDP=9|14|0;BaseQRankSum=0.449;DP=34;MQRankSum=-1.095;QUALapprox=221;RAW_GT_COUNT=0,1,0;RAW_MQandDP=116921,34;ReadPosRankSum=0.221;VarDP=23 GT:AD:DP:GQ:PL:SB 0/1:9,14,0:23:99:221,0,128,248,170,418:4,5,5,9 +chrX 2451234 . A . . END=2451348 GT:DP:GQ:MIN_DP:PL 0/0:46:93:46:0,93,1340 +chrX 2451349 . T C, 625.64 . AS_QUALapprox=|633|0;AS_VarDP=19|24|0;BaseQRankSum=-1.457;DP=45;MQRankSum=0.000;QUALapprox=633;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=-0.159;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:19,24,0:43:99:633,0,509,691,581,1272:10,9,15,9 +chrX 2451350 . T . . END=2451708 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,116,1410 +chrX 2451709 . A G, 882.64 . AS_QUALapprox=|890|0;AS_VarDP=29|32|0;BaseQRankSum=1.265;DP=62;MQRankSum=0.000;QUALapprox=890;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=0.787;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:29,32,0:61:99:890,0,725,976,821,1797:15,14,10,22 +chrX 2451710 . C . . END=2452067 GT:DP:GQ:MIN_DP:PL 0/0:59:88:59:0,88,1568 +chrX 2452068 . G T, 568.64 . AS_QUALapprox=|576|0;AS_VarDP=31|22|0;BaseQRankSum=-0.015;DP=54;MQRankSum=0.000;QUALapprox=576;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=0.524;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:31,22,0:53:99:576,0,860,669,926,1595:16,15,13,9 +chrX 2452069 . G . . END=2452133 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 2452134 . C T, 688.64 . AS_QUALapprox=|696|0;AS_VarDP=28|29|0;BaseQRankSum=-1.161;DP=59;MQRankSum=0.000;QUALapprox=696;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=0.088;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:28,29,0:57:99:696,0,733,780,819,1599:16,12,19,10 +chrX 2452135 . C . . END=2452231 GT:DP:GQ:MIN_DP:PL 0/0:61:62:61:0,62,1524 +chrX 2452232 . T C, 737.64 . AS_QUALapprox=|745|0;AS_VarDP=28|29|0;BaseQRankSum=-1.853;DP=57;MQRankSum=0.000;QUALapprox=745;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-0.319;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:28,29,0:57:99:745,0,772,830,859,1689:14,14,13,16 +chrX 2452233 . G . . END=2452443 GT:DP:GQ:MIN_DP:PL 0/0:64:64:64:0,64,1592 +chrX 2452444 . T A, 1287.64 . AS_QUALapprox=|1295|0;AS_VarDP=23|33|0;BaseQRankSum=-0.050;DP=58;MQRankSum=0.000;QUALapprox=1295;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-0.217;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,33,0:56:99:0|1:2452444_T_A:1295,0,856,1364,955,2319:2452444:15,8,19,14 +chrX 2452445 . G . . END=2452452 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 2452453 . G A, 1252.64 . AS_QUALapprox=|1260|0;AS_VarDP=24|32|0;BaseQRankSum=0.878;DP=58;MQRankSum=0.000;QUALapprox=1260;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=0.050;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,32,0:56:99:0|1:2452444_T_A:1260,0,880,1333,976,2309:2452444:15,9,20,12 +chrX 2452454 . G . . END=2452675 GT:DP:GQ:MIN_DP:PL 0/0:74:99:74:0,117,1800 +chrX 2452676 . T G, 1249.64 . AS_QUALapprox=|1257|0;AS_VarDP=36|34|0;BaseQRankSum=-0.256;DP=70;MQRankSum=0.000;QUALapprox=1257;RAW_GT_COUNT=0,1,0;RAW_MQandDP=252000,70;ReadPosRankSum=-1.051;VarDP=70 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:36,34,0:70:99:0|1:2452676_T_G:1257,0,1387,1365,1489,2854:2452676:18,18,18,16 +chrX 2452677 . A . . END=2452693 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 2452694 . A G, 1293.64 . AS_QUALapprox=|1301|0;AS_VarDP=39|36|0;BaseQRankSum=-2.369;DP=78;MQRankSum=0.000;QUALapprox=1301;RAW_GT_COUNT=0,1,0;RAW_MQandDP=280800,78;ReadPosRankSum=-0.315;VarDP=75 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:39,36,0:75:99:0|1:2452676_T_G:1301,0,1456,1418,1564,2983:2452676:21,18,19,17 +chrX 2452695 . C . . END=2452742 GT:DP:GQ:MIN_DP:PL 0/0:75:99:75:0,120,1800 +chrX 2452743 . G T, 903.64 . AS_QUALapprox=|911|0;AS_VarDP=40|34|0;BaseQRankSum=2.346;DP=76;MQRankSum=0.000;QUALapprox=911;RAW_GT_COUNT=0,1,0;RAW_MQandDP=273600,76;ReadPosRankSum=2.115;VarDP=74 GT:AD:DP:GQ:PL:SB 0/1:40,34,0:74:99:911,0,944,1029,1046,2075:20,20,17,17 +chrX 2452744 . G . . END=2452821 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 2452822 . A G, 514.64 . AS_QUALapprox=|522|0;AS_VarDP=45|21|0;BaseQRankSum=1.436;DP=67;MQRankSum=0.000;QUALapprox=522;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=-1.033;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:45,21,0:66:99:522,0,1286,657,1349,2006:19,26,9,12 +chrX 2452823 . A . . END=2453541 GT:DP:GQ:MIN_DP:PL 0/0:60:77:60:0,77,1502 +chrX 2453542 . T C, 765.64 . AS_QUALapprox=|773|0;AS_VarDP=24|29|0;BaseQRankSum=-0.408;DP=54;MQRankSum=-0.872;QUALapprox=773;RAW_GT_COUNT=0,1,0;RAW_MQandDP=191376,54;ReadPosRankSum=0.492;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:24,29,0:53:99:773,0,635,845,722,1567:6,18,16,13 +chrX 2453543 . G . . END=2453766 GT:DP:GQ:MIN_DP:PL 0/0:56:80:56:0,80,1300 +chrX 2453767 . A G, 533.64 . AS_QUALapprox=|541|0;AS_VarDP=18|20|0;BaseQRankSum=-0.239;DP=39;MQRankSum=0.000;QUALapprox=541;RAW_GT_COUNT=0,1,0;RAW_MQandDP=140400,39;ReadPosRankSum=-1.302;VarDP=38 GT:AD:DP:GQ:PL:SB 0/1:18,20,0:38:99:541,0,481,595,542,1137:12,6,10,10 +chrX 2453768 . T . . END=2454178 GT:DP:GQ:MIN_DP:PL 0/0:56:76:56:0,76,1226 +chrX 2454179 . G T, 684.64 . AS_QUALapprox=|692|0;AS_VarDP=34|28|0;BaseQRankSum=-1.062;DP=63;MQRankSum=-1.921;QUALapprox=692;RAW_GT_COUNT=0,1,0;RAW_MQandDP=220881,63;ReadPosRankSum=0.856;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:34,28,0:62:99:692,0,936,794,1019,1814:20,14,19,9 +chrX 2454180 . A . . END=2454254 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 2454255 . T G, 1002.64 . AS_QUALapprox=|1010|0;AS_VarDP=32|38|0;BaseQRankSum=-0.117;DP=73;MQRankSum=-1.596;QUALapprox=1010;RAW_GT_COUNT=0,1,0;RAW_MQandDP=253681,73;ReadPosRankSum=-1.734;VarDP=70 GT:AD:DP:GQ:PL:SB 0/1:32,38,0:70:99:1010,0,821,1107,935,2041:18,14,16,22 +chrX 2454256 . G . . END=2454351 GT:DP:GQ:MIN_DP:PL 0/0:75:99:75:0,120,1800 +chrX 2454352 . C T, 955.64 . AS_QUALapprox=|963|0;AS_VarDP=39|37|0;BaseQRankSum=-0.970;DP=81;MQRankSum=0.000;QUALapprox=963;RAW_GT_COUNT=0,1,0;RAW_MQandDP=291600,81;ReadPosRankSum=-2.022;VarDP=76 GT:AD:DP:GQ:PL:SB 0/1:39,37,0:76:99:963,0,1063,1080,1174,2254:20,19,16,21 +chrX 2454353 . G . . END=2454526 GT:DP:GQ:MIN_DP:PL 0/0:74:99:74:0,120,1800 +chrX 2454527 . C CAA, 408.60 . AS_QUALapprox=|416|0;AS_VarDP=31|16|0;BaseQRankSum=-0.258;DP=61;MQRankSum=0.000;QUALapprox=416;RAW_GT_COUNT=0,1,0;RAW_MQandDP=218209,61;ReadPosRankSum=-0.146;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:31,16,0:47:99:416,0,937,509,985,1494:14,17,9,7 +chrX 2454528 . A . . END=2454626 GT:DP:GQ:MIN_DP:PL 0/0:58:74:58:0,74,1597 +chrX 2454627 . A C, 369.64 . AS_QUALapprox=|377|0;AS_VarDP=36|17|0;BaseQRankSum=-1.212;DP=55;MQRankSum=0.000;QUALapprox=377;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=0.191;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:36,17,0:53:99:377,0,1060,485,1111,1596:14,22,10,7 +chrX 2454628 . C . . END=2454839 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 2454840 . T C, 890.64 . AS_QUALapprox=|898|0;AS_VarDP=27|27|0;BaseQRankSum=-2.877;DP=56;MQRankSum=0.000;QUALapprox=898;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-0.476;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,27,0:54:99:0|1:2454840_T_C:898,0,960,979,1042,2021:2454840:12,15,14,13 +chrX 2454841 . G . . END=2454864 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 2454865 . A C, 850.64 . AS_QUALapprox=|858|0;AS_VarDP=26|25|0;BaseQRankSum=-1.963;DP=51;MQRankSum=0.000;QUALapprox=858;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=0.340;VarDP=51 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,25,0:51:99:0|1:2454840_T_C:858,0,945,936,1020,1956:2454840:11,15,13,12 +chrX 2454866 . A . . END=2455111 GT:DP:GQ:MIN_DP:PL 0/0:49:80:49:0,80,1311 +chrX 2455112 . C CA, 448.60 . AS_QUALapprox=|456|0;AS_VarDP=24|23|0;BaseQRankSum=-0.335;DP=62;MQRankSum=0.000;QUALapprox=456;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=1.001;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:24,23,0:47:99:456,0,480,528,549,1077:14,10,16,7 +chrX 2455113 . A . . END=2455233 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 2455234 . T C, 803.64 . AS_QUALapprox=|811|0;AS_VarDP=33|31|0;BaseQRankSum=-0.431;DP=65;MQRankSum=0.000;QUALapprox=811;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=-0.437;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:33,31,0:64:99:811,0,890,910,983,1893:16,17,13,18 +chrX 2455235 . A . . END=2455560 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,100,1575 +chrX 2455561 . A G, 333.64 . AS_QUALapprox=|341|0;AS_VarDP=31|14|0;BaseQRankSum=1.054;DP=48;MQRankSum=-1.440;QUALapprox=341;RAW_GT_COUNT=0,1,0;RAW_MQandDP=170800,48;ReadPosRankSum=-0.822;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:31,14,0:45:99:341,0,882,435,924,1359:16,15,8,6 +chrX 2455562 . T . . END=2455721 GT:DP:GQ:MIN_DP:PL 0/0:52:34:51:0,34,1390 +chrX 2455722 . C . . END=2455722 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,1305 +chrX 2455723 . A . . END=2455724 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 2455725 . G . . END=2455725 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1196 +chrX 2455726 . A . . END=2455727 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,108,1696 +chrX 2455728 . C . . END=2455728 GT:DP:GQ:MIN_DP:PL 0/0:52:0:52:0,0,1259 +chrX 2455729 . A . . END=2455739 GT:DP:GQ:MIN_DP:PL 0/0:49:29:49:0,29,1211 +chrX 2455740 . T . . END=2455740 GT:DP:GQ:MIN_DP:PL 0/0:56:0:56:0,0,943 +chrX 2455741 . C CA,CAA, 309.60 . AS_QUALapprox=|250|317|0;AS_VarDP=17|6|7|0;BaseQRankSum=0.280;DP=57;MQRankSum=-1.076;QUALapprox=317;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198093,57;ReadPosRankSum=-0.754;VarDP=30 GT:AD:DP:GQ:PL:SB 0/2:17,6,7,0:30:67:317,67,315,0,215,404,280,391,399,624:12,5,8,5 +chrX 2455742 . A . . END=2455787 GT:DP:GQ:MIN_DP:PL 0/0:52:64:49:0,64,1355 +chrX 2455788 . C T, 1489.06 . AS_QUALapprox=|1503|0;AS_VarDP=0|46|0;DP=48;QUALapprox=1503;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172564,48;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1503,137,0,1503,137,1503:0,0,18,28 +chrX 2455789 . A . . END=2456612 GT:DP:GQ:MIN_DP:PL 0/0:53:58:53:0,58,974 +chrX 2456613 . C CA, 360.60 . AS_QUALapprox=|368|0;AS_VarDP=7|23|0;BaseQRankSum=-1.905;DP=56;MQRankSum=-0.473;QUALapprox=368;RAW_GT_COUNT=0,1,0;RAW_MQandDP=200165,56;ReadPosRankSum=-0.369;VarDP=30 GT:AD:DP:GQ:PL:SB 0/1:7,23,0:30:62:368,0,62,389,130,520:6,1,13,10 +chrX 2456614 . A . . END=2457201 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,114,1597 +chrX 2457202 . G A, 645.64 . AS_QUALapprox=|653|0;AS_VarDP=37|25|0;BaseQRankSum=1.007;DP=64;MQRankSum=0.000;QUALapprox=653;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=-0.237;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:37,25,0:62:99:653,0,1005,764,1080,1844:21,16,14,11 +chrX 2457203 . G . . END=2457685 GT:DP:GQ:MIN_DP:PL 0/0:58:68:58:0,68,1514 +chrX 2457686 . A G, 897.64 . AS_QUALapprox=|905|0;AS_VarDP=16|32|0;BaseQRankSum=0.016;DP=48;MQRankSum=0.000;QUALapprox=905;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=0.711;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:16,32,0:48:99:905,0,379,953,475,1429:7,9,21,11 +chrX 2457687 . G . . END=2458072 GT:DP:GQ:MIN_DP:PL 0/0:52:62:52:0,62,1269 +chrX 2458073 . T A, 799.64 . AS_QUALapprox=|807|0;AS_VarDP=28|29|0;BaseQRankSum=-0.407;DP=58;MQRankSum=0.000;QUALapprox=807;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=0.974;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:28,29,0:57:99:807,0,781,891,869,1760:18,10,13,16 +chrX 2458074 . A . . END=2458107 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 2458108 . G C, 1342.64 . AS_QUALapprox=|1350|0;AS_VarDP=24|37|0;BaseQRankSum=2.147;DP=61;MQRankSum=0.000;QUALapprox=1350;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-1.147;VarDP=61 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,37,0:61:99:0|1:2458108_G_C:1350,0,901,1422,1007,2429:2458108:15,9,21,16 +chrX 2458109 . G C, 1342.64 . AS_QUALapprox=|1350|0;AS_VarDP=24|37|0;BaseQRankSum=1.445;DP=61;MQRankSum=0.000;QUALapprox=1350;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-1.255;VarDP=61 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,37,0:61:99:0|1:2458108_G_C:1350,0,901,1422,1007,2429:2458108:15,9,21,16 +chrX 2458110 . G . . END=2458180 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 2458181 . A G, 1083.64 . AS_QUALapprox=|1091|0;AS_VarDP=28|28|0;BaseQRankSum=-1.034;DP=57;MQRankSum=0.000;QUALapprox=1091;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=0.262;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,28,0:56:99:0|1:2458181_A_G:1091,0,1061,1175,1145,2320:2458181:18,10,18,10 +chrX 2458182 . A . . END=2458184 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 2458185 . T C, 1083.64 . AS_QUALapprox=|1091|0;AS_VarDP=28|28|0;BaseQRankSum=0.521;DP=57;MQRankSum=0.000;QUALapprox=1091;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-0.035;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,28,0:56:99:0|1:2458181_A_G:1091,0,1061,1175,1145,2320:2458181:17,11,18,10 +chrX 2458186 . C . . END=2458281 GT:DP:GQ:MIN_DP:PL 0/0:59:77:59:0,77,1713 +chrX 2458282 . A G, 1407.64 . AS_QUALapprox=|1415|0;AS_VarDP=32|36|0;BaseQRankSum=-0.549;DP=69;MQRankSum=0.000;QUALapprox=1415;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=-0.295;VarDP=68 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:32,36,0:68:99:0|1:2458282_A_G:1415,0,1215,1512,1323,2835:2458282:15,17,21,15 +chrX 2458283 . A . . END=2458287 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 2458288 . T C, 1522.64 . AS_QUALapprox=|1530|0;AS_VarDP=32|39|0;BaseQRankSum=0.186;DP=71;MQRankSum=0.000;QUALapprox=1530;RAW_GT_COUNT=0,1,0;RAW_MQandDP=255600,71;ReadPosRankSum=-0.585;VarDP=71 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:32,39,0:71:99:0|1:2458282_A_G:1530,0,1206,1627,1323,2950:2458282:15,17,22,17 +chrX 2458289 . C . . END=2458302 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 2458303 . T G, 1416.64 . AS_QUALapprox=|1424|0;AS_VarDP=36|37|0;BaseQRankSum=-0.211;DP=73;MQRankSum=0.000;QUALapprox=1424;RAW_GT_COUNT=0,1,0;RAW_MQandDP=262800,73;ReadPosRankSum=0.927;VarDP=73 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:36,37,0:73:99:0|1:2458282_A_G:1424,0,1348,1532,1459,2992:2458282:16,20,19,18 +chrX 2458304 . T . . END=2458449 GT:DP:GQ:MIN_DP:PL 0/0:73:99:73:0,120,1800 +chrX 2458450 . A G, 1071.64 . AS_QUALapprox=|1079|0;AS_VarDP=37|40|0;BaseQRankSum=-0.111;DP=77;MQRankSum=0.000;QUALapprox=1079;RAW_GT_COUNT=0,1,0;RAW_MQandDP=277200,77;ReadPosRankSum=-0.117;VarDP=77 GT:AD:DP:GQ:PL:SB 0/1:37,40,0:77:99:1079,0,982,1190,1102,2292:21,16,20,20 +chrX 2458451 . A . . END=2458517 GT:DP:GQ:MIN_DP:PL 0/0:73:99:73:0,120,1800 +chrX 2458518 . A G, 1060.64 . AS_QUALapprox=|1068|0;AS_VarDP=30|39|0;BaseQRankSum=-0.043;DP=72;MQRankSum=0.000;QUALapprox=1068;RAW_GT_COUNT=0,1,0;RAW_MQandDP=259200,72;ReadPosRankSum=-0.823;VarDP=69 GT:AD:DP:GQ:PL:SB 0/1:30,39,0:69:99:1068,0,775,1158,892,2050:17,13,19,20 +chrX 2458519 . C . . END=2458594 GT:DP:GQ:MIN_DP:PL 0/0:74:99:74:0,120,1800 +chrX 2458595 . G C, 1250.64 . AS_QUALapprox=|1258|0;AS_VarDP=26|43|0;BaseQRankSum=1.159;DP=71;MQRankSum=0.000;QUALapprox=1258;RAW_GT_COUNT=0,1,0;RAW_MQandDP=255600,71;ReadPosRankSum=1.307;VarDP=69 GT:AD:DP:GQ:PL:SB 0/1:26,43,0:69:99:1258,0,641,1335,771,2106:8,18,20,23 +chrX 2458596 . T . . END=2458641 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 2458642 . G C, 1010.64 . AS_QUALapprox=|1018|0;AS_VarDP=23|38|0;BaseQRankSum=-1.967;DP=63;MQRankSum=-0.538;QUALapprox=1018;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226207,63;ReadPosRankSum=-1.526;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:23,38,0:61:99:1018,0,607,1087,720,1807:9,14,20,18 +chrX 2458643 . A . . END=2458673 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 2458674 . CTTCA C, 1300.60 . AS_QUALapprox=|1308|0;AS_VarDP=26|33|0;BaseQRankSum=-0.776;DP=61;MQRankSum=-0.788;QUALapprox=1308;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219007,61;ReadPosRankSum=-0.566;VarDP=59 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,33,0:59:99:0|1:2458674_CTTCA_C:1308,0,972,1386,1071,2457:2458674:11,15,17,16 +chrX 2458679 . T . . END=2458680 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 2458681 . A G, 1303.64 . AS_QUALapprox=|1311|0;AS_VarDP=25|33|0;BaseQRankSum=-0.568;DP=60;MQRankSum=-0.751;QUALapprox=1311;RAW_GT_COUNT=0,1,0;RAW_MQandDP=215407,60;ReadPosRankSum=-0.165;VarDP=58 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,33,0:58:99:0|1:2458674_CTTCA_C:1311,0,930,1386,1029,2415:2458674:11,14,17,16 +chrX 2458682 . A . . END=2459549 GT:DP:GQ:MIN_DP:PL 0/0:58:52:58:0,52,1140 +chrX 2459550 . GTATATA G,GTATATATA, 970.02 . AS_QUALapprox=|578|412|0;AS_VarDP=0|15|13|0;DP=39;QUALapprox=987;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140400,39;VarDP=28 GT:AD:DP:GQ:PL:SB 1/2:0,15,13,0:28:99:987,409,563,614,0,575,1021,522,620,1108:0,0,13,15 +chrX 2459557 . T . . END=2459756 GT:DP:GQ:MIN_DP:PL 0/0:42:52:42:0,52,989 +chrX 2459757 . T C, 509.64 . AS_QUALapprox=|517|0;AS_VarDP=31|20|0;BaseQRankSum=1.357;DP=53;MQRankSum=0.000;QUALapprox=517;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=-0.232;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:31,20,0:51:99:517,0,864,610,924,1534:22,9,13,7 +chrX 2459758 . A . . END=2460398 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 2460399 . C T, 641.64 . AS_QUALapprox=|649|0;AS_VarDP=26|23|0;BaseQRankSum=2.894;DP=52;MQRankSum=-0.636;QUALapprox=649;RAW_GT_COUNT=0,1,0;RAW_MQandDP=121322,52;ReadPosRankSum=-0.030;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:26,23,0:49:99:649,0,676,727,745,1473:14,12,9,14 +chrX 2460400 . A . . END=2460487 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 2460488 . G A, 704.64 . AS_QUALapprox=|712|0;AS_VarDP=37|26|0;BaseQRankSum=3.046;DP=65;MQRankSum=-3.741;QUALapprox=712;RAW_GT_COUNT=0,1,0;RAW_MQandDP=140103,65;ReadPosRankSum=-0.419;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:37,26,0:63:99:712,0,975,823,1054,1876:16,21,12,14 +chrX 2460489 . C . . END=2460580 GT:DP:GQ:MIN_DP:PL 0/0:50:31:47:0,31,1345 +chrX 2460581 . G . . END=2460581 GT:DP:GQ:MIN_DP:PL 0/0:48:15:48:0,15,1300 +chrX 2460582 . C CT,CTTTTTTT, 428.60 . AS_QUALapprox=|56|436|0;AS_VarDP=15|2|12|0;BaseQRankSum=-0.448;DP=46;MQRankSum=-3.378;QUALapprox=436;RAW_GT_COUNT=0,1,0;RAW_MQandDP=124905,46;ReadPosRankSum=-1.311;VarDP=29 GT:AD:DP:GQ:PL:SB 0/2:15,2,12,0:29:99:436,380,675,0,312,627,461,734,535,939:6,9,5,9 +chrX 2460583 . T . . END=2460598 GT:DP:GQ:MIN_DP:PL 0/0:48:87:48:0,87,1305 +chrX 2460599 . A . . END=2460604 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,873 +chrX 2460605 . A . . END=2461705 GT:DP:GQ:MIN_DP:PL 0/0:52:72:52:0,72,1171 +chrX 2461706 . T G, 839.64 . AS_QUALapprox=|847|0;AS_VarDP=29|34|0;BaseQRankSum=-2.527;DP=66;MQRankSum=0.000;QUALapprox=847;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=-1.228;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:29,34,0:63:99:847,0,789,934,891,1825:17,12,17,17 +chrX 2461707 . A . . END=2462183 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 2462184 . CA C, 208.60 . AS_QUALapprox=|216|0;AS_VarDP=36|14|0;BaseQRankSum=0.671;DP=69;MQRankSum=0.000;QUALapprox=216;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=-1.206;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:36,14,0:50:99:0|1:2462184_CA_C:216,0,1375,325,1418,1742:2462184:16,20,7,7 +chrX 2462186 . A . . END=2462198 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 2462199 . A G, 683.64 . AS_QUALapprox=|691|0;AS_VarDP=39|23|0;BaseQRankSum=-0.641;DP=66;MQRankSum=0.000;QUALapprox=691;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=-2.369;VarDP=62 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:39,23,0:62:99:0|1:2462184_CA_C:691,0,1053,807,1121,1929:2462184:16,23,9,14 +chrX 2462200 . G . . END=2462534 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,112,1493 +chrX 2462535 . CA C, 501.60 . AS_QUALapprox=|509|0;AS_VarDP=27|23|0;BaseQRankSum=0.036;DP=60;MQRankSum=0.000;QUALapprox=509;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=0.321;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:27,23,0:50:99:509,0,619,590,688,1278:8,19,14,9 +chrX 2462537 . A . . END=2463209 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,111,1548 +chrX 2463210 . A G, 888.64 . AS_QUALapprox=|896|0;AS_VarDP=23|23|0;BaseQRankSum=-1.322;DP=46;MQRankSum=0.000;QUALapprox=896;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=0.253;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,23,0:46:99:0|1:2463210_A_G:896,0,890,965,959,1924:2463210:15,8,13,10 +chrX 2463211 . G A, 888.64 . AS_QUALapprox=|896|0;AS_VarDP=23|23|0;BaseQRankSum=0.023;DP=46;MQRankSum=0.000;QUALapprox=896;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=0.220;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,23,0:46:99:0|1:2463210_A_G:896,0,890,965,959,1924:2463210:15,8,13,10 +chrX 2463212 . A . . END=2463332 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,105,1345 +chrX 2463333 . G A, 1554.06 . AS_QUALapprox=|1568|0;AS_VarDP=0|48|0;DP=51;QUALapprox=1568;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=48 GT:AD:DP:GQ:PL:SB 1/1:0,48,0:48:99:1568,144,0,1568,144,1568:0,0,25,23 +chrX 2463334 . G . . END=2463396 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 2463397 . T C, 750.64 . AS_QUALapprox=|758|0;AS_VarDP=27|29|0;BaseQRankSum=0.261;DP=59;MQRankSum=0.000;QUALapprox=758;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-0.968;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:27,29,0:56:99:758,0,674,839,761,1600:14,13,15,14 +chrX 2463398 . C . . END=2463850 GT:DP:GQ:MIN_DP:PL 0/0:54:52:54:0,52,1184 +chrX 2463851 . G T, 552.64 . AS_QUALapprox=|560|0;AS_VarDP=29|21|0;BaseQRankSum=1.650;DP=51;MQRankSum=-1.650;QUALapprox=560;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180097,51;ReadPosRankSum=-0.964;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:29,21,0:50:99:560,0,733,646,796,1443:10,19,9,12 +chrX 2463852 . C . . END=2463880 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,113,1418 +chrX 2463881 . G A, 605.64 . AS_QUALapprox=|613|0;AS_VarDP=29|23|0;BaseQRankSum=1.012;DP=52;MQRankSum=-1.084;QUALapprox=613;RAW_GT_COUNT=0,1,0;RAW_MQandDP=184896,52;ReadPosRankSum=-2.038;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:29,23,0:52:99:613,0,779,700,848,1549:12,17,11,12 +chrX 2463882 . A . . END=2464162 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 2464163 . G A, 800.64 . AS_QUALapprox=|808|0;AS_VarDP=25|31|0;BaseQRankSum=-1.077;DP=56;MQRankSum=0.000;QUALapprox=808;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=1.286;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:25,31,0:56:99:808,0,672,883,764,1647:11,14,15,16 +chrX 2464164 . A . . END=2464204 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 2464205 . G A,GCCA, 985.60 . AS_QUALapprox=|306|993|0;AS_VarDP=27|2|23|0;BaseQRankSum=-0.278;DP=57;MQRankSum=0.000;QUALapprox=993;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=0.376;VarDP=52 GT:AD:DP:GQ:PL:SB 0/2:27,2,23,0:52:99:993,687,1809,0,1031,1002,953,1819,1094,2036:17,10,13,12 +chrX 2464206 . C . . END=2464323 GT:DP:GQ:MIN_DP:PL 0/0:56:60:56:0,60,1316 +chrX 2464324 . GGTTCCCTAGCAATCCGGCCAAGGGCCGCTGATGTGCACACACTGAAGAC G, 590.60 . AS_QUALapprox=|598|0;AS_VarDP=40|20|0;BaseQRankSum=0.051;DP=60;MQRankSum=-1.379;QUALapprox=598;RAW_GT_COUNT=0,1,0;RAW_MQandDP=215104,60;ReadPosRankSum=-0.122;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:40,20,0:60:99:0|1:2464324_GGTTCCCTAGCAATCCGGCCAAGGGCCGCTGATGTGCACACACTGAAGAC_G:598,0,1625,718,1680,2398:2464324:25,15,7,13 +chrX 2464374 . G . . END=2464403 GT:DP:GQ:MIN_DP:PL 0/0:47:95:47:0,95,1420 +chrX 2464404 . A G, 526.64 . AS_QUALapprox=|534|0;AS_VarDP=32|15|0;BaseQRankSum=-0.030;DP=47;MQRankSum=-2.055;QUALapprox=534;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165793,47;ReadPosRankSum=-1.518;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:32,15,0:47:99:0|1:2464324_GGTTCCCTAGCAATCCGGCCAAGGGCCGCTGATGTGCACACACTGAAGAC_G:534,0,1299,630,1344,1974:2464324:17,15,5,10 +chrX 2464405 . C . . END=2464410 GT:DP:GQ:MIN_DP:PL 0/0:41:96:41:0,96,1440 +chrX 2464411 . ACACACTGAAGATGTTCCCTAAGAATGTGGGTAAGGGACCGCCGCCATGTTCGCACTGAAGACGCTCCCTAAGAATGCGTCCAGGGGACTGCTGCCGTGTG A, 392.60 . AS_QUALapprox=|400|0;AS_VarDP=49|14|0;BaseQRankSum=0.088;DP=63;MQRankSum=-2.640;QUALapprox=400;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223393,63;ReadPosRankSum=-1.825;VarDP=63 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:49,14,0:63:99:0|1:2464324_GGTTCCCTAGCAATCCGGCCAAGGGCCGCTGATGTGCACACACTGAAGAC_G:400,0,1959,547,1999,2547:2464324:26,23,4,10 +chrX 2464512 . C . . END=2465142 GT:DP:GQ:MIN_DP:PL 0/0:73:71:73:0,71,1171 +chrX 2465143 . A T, 1031.64 . AS_QUALapprox=|1039|0;AS_VarDP=32|37|0;BaseQRankSum=0.228;DP=71;MQRankSum=0.000;QUALapprox=1039;RAW_GT_COUNT=0,1,0;RAW_MQandDP=255600,71;ReadPosRankSum=0.867;VarDP=69 GT:AD:DP:GQ:PL:SB 0/1:32,37,0:69:99:1039,0,865,1135,976,2111:16,16,21,16 +chrX 2465144 . A . . END=2465599 GT:DP:GQ:MIN_DP:PL 0/0:75:67:75:0,67,1658 +chrX 2465600 . C T, 525.64 . AS_QUALapprox=|533|0;AS_VarDP=34|20|0;BaseQRankSum=3.148;DP=54;MQRankSum=0.000;QUALapprox=533;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=-1.174;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:34,20,0:54:99:533,0,874,635,935,1570:18,16,10,10 +chrX 2465601 . G . . END=2465808 GT:DP:GQ:MIN_DP:PL 0/0:63:83:63:0,83,1239 +chrX 2465809 . C . . END=2465809 GT:DP:GQ:MIN_DP:PL 0/0:44:19:44:0,19,1162 +chrX 2465810 . A . . END=2467057 GT:DP:GQ:MIN_DP:PL 0/0:67:56:67:0,56,921 +chrX 2467058 . T . . END=2467058 GT:DP:GQ:MIN_DP:PL 0/0:39:14:39:0,14,968 +chrX 2467059 . C . . END=2467063 GT:DP:GQ:MIN_DP:PL 0/0:40:59:40:0,59,1065 +chrX 2467064 . T . . END=2467065 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,1017 +chrX 2467066 . A . . END=2467530 GT:DP:GQ:MIN_DP:PL 0/0:56:76:56:0,76,1162 +chrX 2467531 . A T, 956.64 . AS_QUALapprox=|964|0;AS_VarDP=44|29|0;BaseQRankSum=1.721;DP=75;MQRankSum=0.000;QUALapprox=964;RAW_GT_COUNT=0,1,0;RAW_MQandDP=270000,75;ReadPosRankSum=-0.445;VarDP=73 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:44,29,0:73:99:0|1:2467531_A_T:964,0,1648,1096,1734,2831:2467531:18,26,15,14 +chrX 2467532 . A . . END=2467554 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 2467555 . C A, 986.64 . AS_QUALapprox=|994|0;AS_VarDP=37|28|0;BaseQRankSum=2.185;DP=67;MQRankSum=0.000;QUALapprox=994;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=-2.461;VarDP=65 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:37,28,0:65:99:0|1:2467531_A_T:994,0,1439,1105,1523,2628:2467531:17,20,14,14 +chrX 2467556 . A . . END=2467799 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,116,1619 +chrX 2467800 . C T, 857.64 . AS_QUALapprox=|865|0;AS_VarDP=23|23|0;BaseQRankSum=-0.050;DP=49;MQRankSum=0.000;QUALapprox=865;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=-0.099;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,23,0:46:99:0|1:2467800_C_T:865,0,834,934,904,1838:2467800:10,13,11,12 +chrX 2467801 . C . . END=2467817 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,120,1800 +chrX 2467818 . T C, 936.64 . AS_QUALapprox=|944|0;AS_VarDP=20|26|0;BaseQRankSum=0.448;DP=48;MQRankSum=0.000;QUALapprox=944;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=-1.319;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:20,26,0:46:99:0|1:2467800_C_T:944,0,721,1004,798,1803:2467800:9,11,12,14 +chrX 2467819 . A . . END=2467897 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,106,1171 +chrX 2467898 . G A, 643.64 . AS_QUALapprox=|651|0;AS_VarDP=16|23|0;BaseQRankSum=0.570;DP=42;MQRankSum=0.000;QUALapprox=651;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151200,42;ReadPosRankSum=-1.171;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:16,23,0:39:99:651,0,394,699,463,1162:8,8,10,13 +chrX 2467899 . G . . END=2467951 GT:DP:GQ:MIN_DP:PL 0/0:34:59:34:0,59,792 +chrX 2467952 . A G, 402.64 . AS_QUALapprox=|410|0;AS_VarDP=16|16|0;BaseQRankSum=0.140;DP=34;MQRankSum=0.000;QUALapprox=410;RAW_GT_COUNT=0,1,0;RAW_MQandDP=122400,34;ReadPosRankSum=1.566;VarDP=32 GT:AD:DP:GQ:PL:SB 0/1:16,16,0:32:99:410,0,392,458,440,898:10,6,9,7 +chrX 2467953 . A . . END=2467977 GT:DP:GQ:MIN_DP:PL 0/0:43:67:43:0,67,1062 +chrX 2467978 . AAAT A, 637.60 . AS_QUALapprox=|645|0;AS_VarDP=25|19|0;BaseQRankSum=-0.985;DP=44;MQRankSum=0.000;QUALapprox=645;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=0.853;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:25,19,0:44:99:645,0,951,720,1008,1728:11,14,9,10 +chrX 2467982 . G . . END=2468104 GT:DP:GQ:MIN_DP:PL 0/0:46:76:46:0,76,1290 +chrX 2468105 . G T, 582.64 . AS_QUALapprox=|590|0;AS_VarDP=18|22|0;BaseQRankSum=-0.165;DP=41;MQRankSum=-1.577;QUALapprox=590;RAW_GT_COUNT=0,1,0;RAW_MQandDP=145265,41;ReadPosRankSum=0.299;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:18,22,0:40:99:590,0,475,644,541,1185:12,6,16,6 +chrX 2468106 . A . . END=2468137 GT:DP:GQ:MIN_DP:PL 0/0:38:94:38:0,94,1122 +chrX 2468138 . C T, 601.64 . AS_QUALapprox=|609|0;AS_VarDP=12|23|0;BaseQRankSum=0.567;DP=40;MQRankSum=-0.993;QUALapprox=609;RAW_GT_COUNT=0,1,0;RAW_MQandDP=142765,40;ReadPosRankSum=1.356;VarDP=35 GT:AD:DP:GQ:PL:SB 0/1:12,23,0:35:99:609,0,262,645,331,976:9,3,15,8 +chrX 2468139 . G . . END=2468290 GT:DP:GQ:MIN_DP:PL 0/0:57:88:57:0,88,1354 +chrX 2468291 . C G, 711.64 . AS_QUALapprox=|719|0;AS_VarDP=32|28|0;BaseQRankSum=1.341;DP=63;MQRankSum=0.000;QUALapprox=719;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=0.764;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:32,28,0:60:99:719,0,781,814,864,1679:14,18,12,16 +chrX 2468292 . G . . END=2468620 GT:DP:GQ:MIN_DP:PL 0/0:55:63:55:0,63,1303 +chrX 2468621 . G A, 551.64 . AS_QUALapprox=|559|0;AS_VarDP=27|18|0;BaseQRankSum=2.433;DP=45;MQRankSum=0.000;QUALapprox=559;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=-0.880;VarDP=45 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,18,0:45:99:0|1:2468621_G_A:559,0,918,639,971,1610:2468621:15,12,9,9 +chrX 2468622 . C . . END=2468654 GT:DP:GQ:MIN_DP:PL 0/0:42:94:42:0,94,1221 +chrX 2468655 . A C, 510.64 . AS_QUALapprox=|518|0;AS_VarDP=26|16|0;BaseQRankSum=0.594;DP=43;MQRankSum=0.000;QUALapprox=518;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154800,43;ReadPosRankSum=1.150;VarDP=42 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,16,0:42:99:0|1:2468621_G_A:518,0,951,596,998,1594:2468621:13,13,10,6 +chrX 2468656 . T . . END=2468961 GT:DP:GQ:MIN_DP:PL 0/0:59:63:59:0,63,1380 +chrX 2468962 . A G, 973.64 . AS_QUALapprox=|981|0;AS_VarDP=29|39|0;BaseQRankSum=-0.260;DP=72;MQRankSum=0.000;QUALapprox=981;RAW_GT_COUNT=0,1,0;RAW_MQandDP=259200,72;ReadPosRankSum=0.850;VarDP=68 GT:AD:DP:GQ:PL:SB 0/1:29,39,0:68:99:981,0,704,1068,820,1888:17,12,21,18 +chrX 2468963 . C . . END=2469127 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,101,1800 +chrX 2469128 . C . . END=2469128 GT:DP:GQ:MIN_DP:PL 0/0:72:19:72:0,19,1866 +chrX 2469129 . A . . END=2469287 GT:DP:GQ:MIN_DP:PL 0/0:67:86:67:0,86,1444 +chrX 2469288 . G . . END=2469288 GT:DP:GQ:MIN_DP:PL 0/0:49:18:49:0,18,1264 +chrX 2469289 . C . . END=2469769 GT:DP:GQ:MIN_DP:PL 0/0:52:28:52:0,28,1300 +chrX 2469770 . A . . END=2469770 GT:DP:GQ:MIN_DP:PL 0/0:65:18:65:0,18,1653 +chrX 2469771 . A . . END=2469827 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 2469828 . A G, 559.64 . AS_QUALapprox=|567|0;AS_VarDP=30|22|0;BaseQRankSum=-0.459;DP=52;MQRankSum=0.000;QUALapprox=567;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=0.760;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:30,22,0:52:99:567,0,846,657,913,1570:14,16,13,9 +chrX 2469829 . A . . END=2470585 GT:DP:GQ:MIN_DP:PL 0/0:56:72:56:0,72,939 +chrX 2470586 . T C, 648.64 . AS_QUALapprox=|656|0;AS_VarDP=20|26|0;BaseQRankSum=-1.190;DP=47;MQRankSum=-0.128;QUALapprox=656;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162171,47;ReadPosRankSum=-1.064;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:20,26,0:46:99:656,0,513,716,590,1306:12,8,14,12 +chrX 2470587 . A . . END=2470647 GT:DP:GQ:MIN_DP:PL 0/0:48:69:48:0,69,1410 +chrX 2470648 . T C, 1540.06 . AS_QUALapprox=|1554|0;AS_VarDP=1|52|0;BaseQRankSum=1.337;DP=56;MQRankSum=-0.368;QUALapprox=1554;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194571,56;ReadPosRankSum=0.523;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:1,52,0:53:99:1554,132,0,1557,154,1579:1,0,26,26 +chrX 2470649 . G . . END=2470889 GT:DP:GQ:MIN_DP:PL 0/0:73:34:67:0,34,1773 +chrX 2470890 . GA G, 769.60 . AS_QUALapprox=|777|0;AS_VarDP=39|26|0;BaseQRankSum=0.216;DP=69;MQRankSum=1.688;QUALapprox=777;RAW_GT_COUNT=0,1,0;RAW_MQandDP=236273,69;ReadPosRankSum=0.161;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:39,26,0:65:99:777,0,1288,895,1366,2261:23,16,12,14 +chrX 2470892 . A . . END=2470898 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 2470899 . G . . END=2470899 GT:DP:GQ:MIN_DP:PL 0/0:66:19:66:0,19,2609 +chrX 2470900 . A . . END=2472691 GT:DP:GQ:MIN_DP:PL 0/0:69:34:56:0,34,1251 +chrX 2472692 . C A, 672.64 . AS_QUALapprox=|680|0;AS_VarDP=23|25|0;BaseQRankSum=0.472;DP=50;MQRankSum=0.000;QUALapprox=680;RAW_GT_COUNT=0,1,0;RAW_MQandDP=178000,50;ReadPosRankSum=-1.012;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:23,25,0:48:99:680,0,656,749,731,1480:12,11,9,16 +chrX 2472693 . C . . END=2473348 GT:DP:GQ:MIN_DP:PL 0/0:51:68:51:0,68,1007 +chrX 2473349 . C A, 798.64 . AS_QUALapprox=|806|0;AS_VarDP=21|28|0;BaseQRankSum=-1.208;DP=51;MQRankSum=0.000;QUALapprox=806;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-0.192;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:21,28,0:49:99:806,0,583,869,667,1536:12,9,14,14 +chrX 2473350 . G . . END=2474649 GT:DP:GQ:MIN_DP:PL 0/0:64:29:59:0,29,1477 +chrX 2474650 . A C, 693.64 . AS_QUALapprox=|701|0;AS_VarDP=21|28|0;BaseQRankSum=-2.317;DP=50;MQRankSum=0.000;QUALapprox=701;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=-1.315;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:21,28,0:49:99:701,0,563,764,646,1410:11,10,10,18 +chrX 2474651 . G . . END=2475398 GT:DP:GQ:MIN_DP:PL 0/0:69:86:69:0,86,1558 +chrX 2475399 . A G, 693.64 . AS_QUALapprox=|701|0;AS_VarDP=34|29|0;BaseQRankSum=-0.139;DP=63;MQRankSum=0.955;QUALapprox=701;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226225,63;ReadPosRankSum=1.159;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:34,29,0:63:99:701,0,882,802,968,1770:19,15,18,11 +chrX 2475400 . G . . END=2476239 GT:DP:GQ:MIN_DP:PL 0/0:65:89:65:0,89,1369 +chrX 2476240 . A AC, 653.60 . AS_QUALapprox=|661|0;AS_VarDP=22|27|0;BaseQRankSum=-1.311;DP=57;MQRankSum=-1.311;QUALapprox=661;RAW_GT_COUNT=0,1,0;RAW_MQandDP=203309,57;ReadPosRankSum=3.370;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:22,27,0:49:99:661,0,656,761,702,1560:11,11,12,13 +chrX 2476241 . A . . END=2476641 GT:DP:GQ:MIN_DP:PL 0/0:59:86:59:0,86,1402 +chrX 2476642 . A G, 576.64 . AS_QUALapprox=|584|0;AS_VarDP=35|25|0;BaseQRankSum=-1.728;DP=62;MQRankSum=0.000;QUALapprox=584;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=1.410;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:35,25,0:60:99:584,0,1006,689,1080,1769:20,15,13,12 +chrX 2476643 . A . . END=2477454 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,104,1286 +chrX 2477455 . G A, 802.64 . AS_QUALapprox=|810|0;AS_VarDP=30|29|0;BaseQRankSum=2.018;DP=59;MQRankSum=0.000;QUALapprox=810;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-2.222;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:30,29,0:59:99:810,0,785,901,873,1773:14,16,14,15 +chrX 2477456 . T . . END=2477766 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,118,1800 +chrX 2477767 . C T, 615.64 . AS_QUALapprox=|623|0;AS_VarDP=24|23|0;BaseQRankSum=0.438;DP=49;MQRankSum=-0.598;QUALapprox=623;RAW_GT_COUNT=0,1,0;RAW_MQandDP=110996,49;ReadPosRankSum=0.319;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:24,23,0:47:99:623,0,649,695,717,1412:9,15,10,13 +chrX 2477768 . C . . END=2478194 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,115,1517 +chrX 2478195 . C G, 810.64 . AS_QUALapprox=|818|0;AS_VarDP=28|30|0;BaseQRankSum=-0.236;DP=60;MQRankSum=-0.718;QUALapprox=818;RAW_GT_COUNT=0,1,0;RAW_MQandDP=170911,60;ReadPosRankSum=0.615;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:28,30,0:58:99:818,0,759,902,849,1751:15,13,14,16 +chrX 2478196 . A . . END=2478225 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 2478226 . G C, 1777.06 . AS_QUALapprox=|1791|0;AS_VarDP=0|55|0;DP=56;QUALapprox=1791;RAW_GT_COUNT=0,0,1;RAW_MQandDP=148951,56;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1791,164,0,1791,164,1791:0,0,31,24 +chrX 2478227 . G . . END=2478492 GT:DP:GQ:MIN_DP:PL 0/0:60:75:60:0,75,1638 +chrX 2478493 . A . . END=2478493 GT:DP:GQ:MIN_DP:PL 0/0:69:9:69:0,9,1891 +chrX 2478494 . G . . END=2478494 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 2478495 . G . . END=2478495 GT:DP:GQ:MIN_DP:PL 0/0:71:15:71:0,15,1961 +chrX 2478496 . G . . END=2478496 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 2478497 . A . . END=2478500 GT:DP:GQ:MIN_DP:PL 0/0:69:0:69:0,0,1832 +chrX 2478501 . C . . END=2478502 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 2478503 . C . . END=2478503 GT:DP:GQ:MIN_DP:PL 0/0:68:0:68:0,0,1747 +chrX 2478504 . T . . END=2478504 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 2478505 . A . . END=2478505 GT:DP:GQ:MIN_DP:PL 0/0:70:0:70:0,0,1754 +chrX 2478506 . A . . END=2478509 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,120,1800 +chrX 2478510 . T . . END=2478510 GT:DP:GQ:MIN_DP:PL 0/0:73:0:73:0,0,1650 +chrX 2478511 . G . . END=2478514 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 2478515 . T . . END=2478515 GT:DP:GQ:MIN_DP:PL 0/0:67:0:67:0,0,1623 +chrX 2478516 . C . . END=2478520 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 2478521 . C . . END=2478521 GT:DP:GQ:MIN_DP:PL 0/0:68:0:68:0,0,1648 +chrX 2478522 . A . . END=2478523 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 2478524 . G . . END=2478525 GT:DP:GQ:MIN_DP:PL 0/0:66:0:66:0,0,1379 +chrX 2478526 . G . . END=2478528 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 2478529 . C . . END=2478529 GT:DP:GQ:MIN_DP:PL 0/0:63:0:63:0,0,1363 +chrX 2478530 . A . . END=2478532 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 2478533 . G . . END=2478534 GT:DP:GQ:MIN_DP:PL 0/0:66:0:66:0,0,1414 +chrX 2478535 . A . . END=2478536 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 2478537 . C . . END=2478538 GT:DP:GQ:MIN_DP:PL 0/0:60:0:60:0,0,1375 +chrX 2478539 . C . . END=2478539 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 2478540 . C . . END=2478545 GT:DP:GQ:MIN_DP:PL 0/0:59:0:59:0,0,1205 +chrX 2478546 . G . . END=2478546 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 2478547 . T . . END=2478555 GT:DP:GQ:MIN_DP:PL 0/0:56:0:56:0,0,1111 +chrX 2478556 . A . . END=2478558 GT:DP:GQ:MIN_DP:PL 0/0:76:99:76:0,120,1800 +chrX 2478559 . A . . END=2478562 GT:DP:GQ:MIN_DP:PL 0/0:60:0:60:0,0,1107 +chrX 2478563 . T . . END=2478563 GT:DP:GQ:MIN_DP:PL 0/0:79:99:79:0,120,1800 +chrX 2478564 . C . . END=2478565 GT:DP:GQ:MIN_DP:PL 0/0:61:0:61:0,0,1176 +chrX 2478566 . C . . END=2478566 GT:DP:GQ:MIN_DP:PL 0/0:78:99:78:0,120,1800 +chrX 2478567 . T . . END=2478569 GT:DP:GQ:MIN_DP:PL 0/0:61:0:61:0,0,986 +chrX 2478570 . G . . END=2478570 GT:DP:GQ:MIN_DP:PL 0/0:76:99:76:0,120,1800 +chrX 2478571 . A . . END=2478577 GT:DP:GQ:MIN_DP:PL 0/0:57:0:57:0,0,798 +chrX 2478578 . C . . END=2478578 GT:DP:GQ:MIN_DP:PL 0/0:75:99:75:0,120,1800 +chrX 2478579 . T . . END=2478580 GT:DP:GQ:MIN_DP:PL 0/0:58:0:58:0,0,710 +chrX 2478581 . A . . END=2478582 GT:DP:GQ:MIN_DP:PL 0/0:78:99:78:0,120,1800 +chrX 2478583 . A . . END=2478588 GT:DP:GQ:MIN_DP:PL 0/0:57:0:57:0,0,730 +chrX 2478589 . C . . END=2478608 GT:DP:GQ:MIN_DP:PL 0/0:85:99:85:0,120,1800 +chrX 2478609 . C CATGTGGCCCTGGGACATCCACAGTGTACACACTGAAGACATTCCCTAAGA, 1211.60 . AS_QUALapprox=|1219|0;AS_VarDP=20|33|0;BaseQRankSum=-1.319;DP=58;MQRankSum=0.000;QUALapprox=1219;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-3.481;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:20,33,0:53:99:1219,0,692,1282,791,2073:10,10,15,18 +chrX 2478610 . A . . END=2478652 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,120,1800 +chrX 2478653 . A G, 757.64 . AS_QUALapprox=|765|0;AS_VarDP=26|30|0;BaseQRankSum=-1.093;DP=59;MQRankSum=0.000;QUALapprox=765;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=1.865;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:26,30,0:56:99:765,0,696,843,786,1629:14,12,15,15 +chrX 2478654 . C . . END=2478654 GT:DP:GQ:MIN_DP:PL 0/0:85:99:85:0,120,1800 +chrX 2478655 . C . . END=2478655 GT:DP:GQ:MIN_DP:PL 0/0:76:0:76:0,0,1736 +chrX 2478656 . A . . END=2478656 GT:DP:GQ:MIN_DP:PL 0/0:85:99:85:0,120,1800 +chrX 2478657 . G . . END=2478657 GT:DP:GQ:MIN_DP:PL 0/0:75:0:75:0,0,1670 +chrX 2478658 . G . . END=2478658 GT:DP:GQ:MIN_DP:PL 0/0:82:99:82:0,120,1800 +chrX 2478659 . G . . END=2478662 GT:DP:GQ:MIN_DP:PL 0/0:77:0:77:0,0,1595 +chrX 2478663 . T . . END=2478664 GT:DP:GQ:MIN_DP:PL 0/0:83:99:83:0,120,1800 +chrX 2478665 . C . . END=2478669 GT:DP:GQ:MIN_DP:PL 0/0:78:0:78:0,0,1762 +chrX 2478670 . G . . END=2478670 GT:DP:GQ:MIN_DP:PL 0/0:82:99:82:0,120,1800 +chrX 2478671 . T . . END=2478671 GT:DP:GQ:MIN_DP:PL 0/0:82:0:82:0,0,1916 +chrX 2478672 . G . . END=2478672 GT:DP:GQ:MIN_DP:PL 0/0:85:99:85:0,120,1800 +chrX 2478673 . T . . END=2478675 GT:DP:GQ:MIN_DP:PL 0/0:82:0:82:0,0,1691 +chrX 2478676 . G . . END=2478685 GT:DP:GQ:MIN_DP:PL 0/0:83:99:83:0,120,1800 +chrX 2478686 . T . . END=2478687 GT:DP:GQ:MIN_DP:PL 0/0:82:0:82:0,0,1842 +chrX 2478688 . T . . END=2478741 GT:DP:GQ:MIN_DP:PL 0/0:68:27:59:0,27,1800 +chrX 2478742 . C T, 873.64 . AS_QUALapprox=|881|0;AS_VarDP=21|31|0;BaseQRankSum=-1.677;DP=52;MQRankSum=0.000;QUALapprox=881;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=0.681;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:21,31,0:52:99:881,0,570,944,663,1607:9,12,16,15 +chrX 2478743 . A . . END=2478805 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 2478806 . G A, 764.64 . AS_QUALapprox=|772|0;AS_VarDP=22|28|0;BaseQRankSum=0.117;DP=54;MQRankSum=0.000;QUALapprox=772;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=0.724;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:22,28,0:50:99:772,0,560,838,644,1482:14,8,14,14 +chrX 2478807 . G . . END=2478879 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 2478880 . G C, 816.64 . AS_QUALapprox=|824|0;AS_VarDP=32|29|0;BaseQRankSum=2.448;DP=62;MQRankSum=0.000;QUALapprox=824;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=0.491;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:32,29,0:61:99:824,0,854,920,941,1862:17,15,15,14 +chrX 2478881 . A . . END=2478958 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 2478959 . C G, 697.64 . AS_QUALapprox=|705|0;AS_VarDP=36|27|0;BaseQRankSum=1.095;DP=65;MQRankSum=0.000;QUALapprox=705;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=-0.528;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:36,27,0:63:99:705,0,965,813,1046,1859:18,18,15,12 +chrX 2478960 . A . . END=2479226 GT:DP:GQ:MIN_DP:PL 0/0:63:52:63:0,52,1523 +chrX 2479227 . A . . END=2479227 GT:DP:GQ:MIN_DP:PL 0/0:59:0:59:0,0,1434 +chrX 2479228 . T . . END=2479630 GT:DP:GQ:MIN_DP:PL 0/0:65:42:65:0,42,1588 +chrX 2479631 . C . . END=2479631 GT:DP:GQ:MIN_DP:PL 0/0:65:17:65:0,17,1813 +chrX 2479632 . T . . END=2480020 GT:DP:GQ:MIN_DP:PL 0/0:71:68:71:0,68,1800 +chrX 2480021 . G A, 852.64 . AS_QUALapprox=|860|0;AS_VarDP=28|31|0;BaseQRankSum=0.166;DP=62;MQRankSum=0.000;QUALapprox=860;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=1.010;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:28,31,0:59:99:860,0,756,944,849,1793:10,18,13,18 +chrX 2480022 . C . . END=2480279 GT:DP:GQ:MIN_DP:PL 0/0:54:61:54:0,61,945 +chrX 2480280 . T C, 532.64 . AS_QUALapprox=|540|0;AS_VarDP=11|19|0;BaseQRankSum=-0.475;DP=31;MQRankSum=0.026;QUALapprox=540;RAW_GT_COUNT=0,1,0;RAW_MQandDP=101580,31;ReadPosRankSum=0.409;VarDP=30 GT:AD:DP:GQ:PL:SB 0/1:11,19,0:30:99:540,0,282,573,339,912:4,7,8,11 +chrX 2480281 . A . . END=2480498 GT:DP:GQ:MIN_DP:PL 0/0:36:40:36:0,40,790 +chrX 2480499 . T G, 551.64 . AS_QUALapprox=|559|0;AS_VarDP=16|21|0;BaseQRankSum=1.372;DP=39;MQRankSum=0.000;QUALapprox=559;RAW_GT_COUNT=0,1,0;RAW_MQandDP=140400,39;ReadPosRankSum=0.291;VarDP=37 GT:AD:DP:GQ:PL:SB 0/1:16,21,0:37:99:559,0,385,607,448,1055:7,9,10,11 +chrX 2480500 . A . . END=2480515 GT:DP:GQ:MIN_DP:PL 0/0:36:80:36:0,80,1026 +chrX 2480516 . TAA T, 321.60 . AS_QUALapprox=|329|0;AS_VarDP=17|12|0;BaseQRankSum=1.040;DP=41;MQRankSum=0.000;QUALapprox=329;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147600,41;ReadPosRankSum=0.883;VarDP=29 GT:AD:DP:GQ:PL:SB 0/1:17,12,0:29:99:329,0,446,380,483,862:6,11,7,5 +chrX 2480519 . A . . END=2480626 GT:DP:GQ:MIN_DP:PL 0/0:42:32:41:0,32,1164 +chrX 2480627 . G A, 563.64 . AS_QUALapprox=|571|0;AS_VarDP=21|22|0;BaseQRankSum=-1.175;DP=43;MQRankSum=0.000;QUALapprox=571;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154800,43;ReadPosRankSum=0.109;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:21,22,0:43:99:571,0,581,634,647,1281:12,9,20,2 +chrX 2480628 . A . . END=2481161 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,105,1385 +chrX 2481162 . C T, 2336.06 . AS_QUALapprox=|2350|0;AS_VarDP=0|70|0;DP=72;QUALapprox=2350;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;VarDP=70 GT:AD:DP:GQ:PL:SB 1/1:0,70,0:70:99:2350,211,0,2350,211,2350:0,0,27,43 +chrX 2481163 . G . . END=2481778 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,109,1552 +chrX 2481779 . T C, 411.64 . AS_QUALapprox=|419|0;AS_VarDP=33|19|0;BaseQRankSum=-1.736;DP=53;MQRankSum=-3.238;QUALapprox=419;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180334,53;ReadPosRankSum=0.010;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:33,19,0:52:99:419,0,951,518,1008,1526:18,15,11,8 +chrX 2481780 . G . . END=2481826 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 2481827 . AC A, 571.60 . AS_QUALapprox=|579|0;AS_VarDP=36|20|0;BaseQRankSum=0.878;DP=59;MQRankSum=-3.919;QUALapprox=579;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198658,59;ReadPosRankSum=-1.103;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:36,20,0:56:99:579,0,1161,687,1221,1909:16,20,9,11 +chrX 2481829 . C . . END=2482035 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,101,1485 +chrX 2482036 . T C, 442.64 . AS_QUALapprox=|450|0;AS_VarDP=34|18|0;BaseQRankSum=1.714;DP=53;MQRankSum=-6.038;QUALapprox=450;RAW_GT_COUNT=0,1,0;RAW_MQandDP=117870,53;ReadPosRankSum=-1.126;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:34,18,0:52:99:450,0,975,552,1030,1582:20,14,14,4 +chrX 2482037 . T . . END=2482128 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,110,1602 +chrX 2482129 . C CTT, 636.60 . AS_QUALapprox=|644|0;AS_VarDP=24|25|0;BaseQRankSum=0.412;DP=58;MQRankSum=-4.298;QUALapprox=644;RAW_GT_COUNT=0,1,0;RAW_MQandDP=152695,58;ReadPosRankSum=0.750;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:24,25,0:49:99:644,0,662,716,737,1453:9,15,16,9 +chrX 2482130 . T . . END=2482578 GT:DP:GQ:MIN_DP:PL 0/0:56:52:56:0,52,1514 +chrX 2482579 . T A, 702.64 . AS_QUALapprox=|710|0;AS_VarDP=32|26|0;BaseQRankSum=1.753;DP=63;MQRankSum=0.000;QUALapprox=710;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=-0.110;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:32,26,0:58:99:710,0,842,806,921,1726:15,17,9,17 +chrX 2482580 . A . . END=2482615 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 2482616 . T C, 561.64 . AS_QUALapprox=|569|0;AS_VarDP=28|23|0;BaseQRankSum=-0.450;DP=52;MQRankSum=0.000;QUALapprox=569;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=-0.635;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:28,23,0:51:99:569,0,759,653,828,1481:14,14,11,12 +chrX 2482617 . C . . END=2482793 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,116,1748 +chrX 2482794 . G A, 830.64 . AS_QUALapprox=|838|0;AS_VarDP=22|31|0;BaseQRankSum=-0.949;DP=56;MQRankSum=0.376;QUALapprox=838;RAW_GT_COUNT=0,1,0;RAW_MQandDP=160374,56;ReadPosRankSum=-0.894;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:22,31,0:53:99:838,0,555,904,648,1552:9,13,14,17 +chrX 2482795 . G . . END=2482867 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,111,1266 +chrX 2482868 . A G, 447.64 . AS_QUALapprox=|455|0;AS_VarDP=23|17|0;BaseQRankSum=1.120;DP=41;MQRankSum=-4.937;QUALapprox=455;RAW_GT_COUNT=0,1,0;RAW_MQandDP=83207,41;ReadPosRankSum=-0.643;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:23,17,0:40:99:455,0,624,523,675,1198:10,13,4,13 +chrX 2482869 . T . . END=2483062 GT:DP:GQ:MIN_DP:PL 0/0:49:86:49:0,86,1237 +chrX 2483063 . CA C, 913.60 . AS_QUALapprox=|921|0;AS_VarDP=21|29|0;BaseQRankSum=-1.342;DP=52;MQRankSum=-0.982;QUALapprox=921;RAW_GT_COUNT=0,1,0;RAW_MQandDP=178677,52;ReadPosRankSum=-0.561;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:21,29,0:50:99:921,0,635,984,722,1706:13,8,17,12 +chrX 2483065 . A . . END=2483327 GT:DP:GQ:MIN_DP:PL 0/0:60:89:60:0,89,1724 +chrX 2483328 . T G, 726.64 . AS_QUALapprox=|734|0;AS_VarDP=27|28|0;BaseQRankSum=-0.956;DP=56;MQRankSum=0.000;QUALapprox=734;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-0.143;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:27,28,0:55:99:734,0,729,814,813,1627:16,11,14,14 +chrX 2483329 . T . . END=2483423 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 2483424 . T A, 701.64 . AS_QUALapprox=|709|0;AS_VarDP=32|26|0;BaseQRankSum=1.732;DP=61;MQRankSum=0.000;QUALapprox=709;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-0.766;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:32,26,0:58:99:709,0,857,806,935,1741:12,20,17,9 +chrX 2483425 . G . . END=2483788 GT:DP:GQ:MIN_DP:PL 0/0:59:40:59:0,40,1269 +chrX 2483789 . CAAAAA C, 716.60 . AS_QUALapprox=|724|0;AS_VarDP=13|19|0;BaseQRankSum=-0.866;DP=45;MQRankSum=0.000;QUALapprox=724;RAW_GT_COUNT=0,1,0;RAW_MQandDP=160801,45;ReadPosRankSum=0.669;VarDP=32 GT:AD:DP:GQ:PL:SB 0/1:13,19,0:32:99:724,0,410,763,468,1230:6,7,8,11 +chrX 2483795 . A . . END=2483830 GT:DP:GQ:MIN_DP:PL 0/0:42:90:42:0,90,1212 +chrX 2483831 . G C, 879.64 . AS_QUALapprox=|887|0;AS_VarDP=19|23|0;BaseQRankSum=0.593;DP=43;MQRankSum=0.000;QUALapprox=887;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154800,43;ReadPosRankSum=0.152;VarDP=42 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:19,23,0:42:99:0|1:2483831_G_C:887,0,708,944,777,1721:2483831:8,11,12,11 +chrX 2483832 . G . . END=2483852 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,102,1250 +chrX 2483853 . C T, 895.64 . AS_QUALapprox=|903|0;AS_VarDP=21|23|0;BaseQRankSum=-0.727;DP=44;MQRankSum=0.000;QUALapprox=903;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=-1.071;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,23,0:44:99:0|1:2483831_G_C:903,0,813,966,882,1848:2483831:11,10,11,12 +chrX 2483854 . A . . END=2483875 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,118,1420 +chrX 2483876 . G A, 972.64 . AS_QUALapprox=|980|0;AS_VarDP=23|25|0;BaseQRankSum=1.316;DP=48;MQRankSum=0.000;QUALapprox=980;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=-2.123;VarDP=48 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,25,0:48:99:0|1:2483831_G_C:980,0,879,1049,954,2003:2483831:12,11,13,12 +chrX 2483877 . T . . END=2483878 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,120,1800 +chrX 2483879 . C A, 972.64 . AS_QUALapprox=|980|0;AS_VarDP=23|25|0;BaseQRankSum=-0.641;DP=49;MQRankSum=0.000;QUALapprox=980;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=-1.650;VarDP=48 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,25,0:48:99:0|1:2483831_G_C:980,0,879,1049,954,2003:2483831:12,11,13,12 +chrX 2483880 . A . . END=2484110 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,107,1598 +chrX 2484111 . T G, 1543.06 . AS_QUALapprox=|1557|0;AS_VarDP=0|50|0;DP=51;QUALapprox=1557;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183025,51;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1557,149,0,1557,149,1557:0,0,26,24 +chrX 2484112 . A . . END=2484262 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,115,1578 +chrX 2484263 . A G, 654.64 . AS_QUALapprox=|662|0;AS_VarDP=41|26|0;BaseQRankSum=-1.032;DP=71;MQRankSum=0.000;QUALapprox=662;RAW_GT_COUNT=0,1,0;RAW_MQandDP=255600,71;ReadPosRankSum=0.959;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:41,26,0:67:99:662,0,1193,786,1271,2057:17,24,14,12 +chrX 2484264 . C . . END=2484822 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 2484823 . G C, 2205.06 . AS_QUALapprox=|2219|0;AS_VarDP=0|60|0;DP=60;QUALapprox=2219;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:2219,180,0,2219,180,2219:0,0,32,28 +chrX 2484824 . G . . END=2484842 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 2484843 . C T, 767.64 . AS_QUALapprox=|775|0;AS_VarDP=32|29|0;BaseQRankSum=0.216;DP=61;MQRankSum=0.000;QUALapprox=775;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-0.137;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:32,29,0:61:99:775,0,854,871,941,1812:13,19,18,11 +chrX 2484844 . C . . END=2484903 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 2484904 . A G, 1796.06 . AS_QUALapprox=|1810|0;AS_VarDP=0|57|0;DP=58;QUALapprox=1810;RAW_GT_COUNT=0,0,1;RAW_MQandDP=207504,58;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1810,170,0,1810,170,1810:0,0,24,33 +chrX 2484905 . C . . END=2485066 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 2485067 . A C, 1792.06 . AS_QUALapprox=|1806|0;AS_VarDP=0|56|0;DP=57;QUALapprox=1806;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1806,168,0,1806,168,1806:0,0,26,30 +chrX 2485068 . C . . END=2485629 GT:DP:GQ:MIN_DP:PL 0/0:15:20:14:0,20,405 +chrX 2485630 . G . . END=2485630 GT:DP:GQ:MIN_DP:PL 0/0:13:14:13:0,14,382 +chrX 2485631 . G . . END=2485635 GT:DP:GQ:MIN_DP:PL 0/0:12:21:12:0,21,315 +chrX 2485636 . A . . END=2485636 GT:DP:GQ:MIN_DP:PL 0/0:12:0:12:0,0,289 +chrX 2485637 . G . . END=2485640 GT:DP:GQ:MIN_DP:PL 0/0:12:21:12:0,21,315 +chrX 2485641 . G . . END=2485642 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,253 +chrX 2485643 . A G, 226.04 . AS_QUALapprox=|240|0;AS_VarDP=0|8|0;DP=11;QUALapprox=240;RAW_GT_COUNT=0,0,1;RAW_MQandDP=39600,11;VarDP=8 GT:AD:DP:GQ:PL:SB 1/1:0,8,0:8:24:240,24,0,240,24,240:0,0,8,0 +chrX 2485644 . G . . END=2485644 GT:DP:GQ:MIN_DP:PL 0/0:12:24:12:0,24,360 +chrX 2485645 . G . . END=2485646 GT:DP:GQ:MIN_DP:PL 0/0:11:8:11:0,8,293 +chrX 2485647 . G . . END=2485649 GT:DP:GQ:MIN_DP:PL 0/0:11:24:11:0,24,360 +chrX 2485650 . A . . END=2485650 GT:DP:GQ:MIN_DP:PL 0/0:10:16:10:0,16,289 +chrX 2485651 . G . . END=2485657 GT:DP:GQ:MIN_DP:PL 0/0:10:27:10:0,27,232 +chrX 2485658 . A . . END=2485663 GT:DP:GQ:MIN_DP:PL 0/0:10:0:10:0,0,159 +chrX 2485664 . G . . END=2485673 GT:DP:GQ:MIN_DP:PL 0/0:10:21:10:0,21,303 +chrX 2485674 . G . . END=2485674 GT:DP:GQ:MIN_DP:PL 0/0:9:13:9:0,13,264 +chrX 2485675 . G . . END=2485682 GT:DP:GQ:MIN_DP:PL 0/0:9:24:9:0,24,278 +chrX 2485683 . A . . END=2485684 GT:DP:GQ:MIN_DP:PL 0/0:11:16:11:0,16,289 +chrX 2485685 . G . . END=2485685 GT:DP:GQ:MIN_DP:PL 0/0:10:30:10:0,30,338 +chrX 2485686 . G . . END=2485686 GT:DP:GQ:MIN_DP:PL 0/0:10:15:10:0,15,278 +chrX 2485687 . A . . END=2485694 GT:DP:GQ:MIN_DP:PL 0/0:11:30:11:0,30,317 +chrX 2485695 . A . . END=2485695 GT:DP:GQ:MIN_DP:PL 0/0:13:14:13:0,14,382 +chrX 2485696 . G . . END=2485702 GT:DP:GQ:MIN_DP:PL 0/0:14:28:13:0,28,362 +chrX 2485703 . G . . END=2485703 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,368 +chrX 2485704 . A . . END=2485706 GT:DP:GQ:MIN_DP:PL 0/0:15:39:14:0,39,467 +chrX 2485707 . G . . END=2485708 GT:DP:GQ:MIN_DP:PL 0/0:15:0:15:0,0,338 +chrX 2485709 . G . . END=2485711 GT:DP:GQ:MIN_DP:PL 0/0:13:25:13:0,25,393 +chrX 2485712 . A . . END=2485712 GT:DP:GQ:MIN_DP:PL 0/0:14:17:14:0,17,407 +chrX 2485713 . A . . END=2485740 GT:DP:GQ:MIN_DP:PL 0/0:18:36:13:0,36,412 +chrX 2485741 . AGAAGGGAGGGAAGGAAGGGAGAGAAGGAAGGAAGGGAGAAAAGGGAGAGAAGGGAGAGAAGGAAG A, 586.05 . AS_QUALapprox=|652|0;AS_VarDP=0|15|0;DP=28;QUALapprox=652;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97189,28;VarDP=15 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,15,0:15:50:0|1:2485741_AGAAGGGAGGGAAGGAAGGGAGAGAAGGAAGGAAGGGAGAAAAGGGAGAGAAGGGAGAGAAGGAAG_A:652,50,0,626,72,769:2485741:0,0,12,0 +chrX 2485807 . G . . END=2485938 GT:DP:GQ:MIN_DP:PL 0/0:27:30:26:0,30,450 +chrX 2485939 . G T, 645.64 . AS_QUALapprox=|653|0;AS_VarDP=8|24|0;BaseQRankSum=-0.924;DP=34;MQRankSum=0.000;QUALapprox=653;RAW_GT_COUNT=0,1,0;RAW_MQandDP=122400,34;ReadPosRankSum=-0.305;VarDP=32 GT:AD:DP:GQ:PL:SB 0/1:8,24,0:32:99:653,0,171,677,243,920:5,3,18,6 +chrX 2485940 . G . . END=2486577 GT:DP:GQ:MIN_DP:PL 0/0:52:54:52:0,54,842 +chrX 2486578 . G A, 1696.06 . AS_QUALapprox=|1710|0;AS_VarDP=0|54|0;DP=55;QUALapprox=1710;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:1710,162,0,1710,162,1710:0,0,28,26 +chrX 2486579 . A . . END=2487000 GT:DP:GQ:MIN_DP:PL 0/0:53:92:53:0,92,1192 +chrX 2487001 . T C, 2261.06 . AS_QUALapprox=|2275|0;AS_VarDP=0|71|0;DP=72;QUALapprox=2275;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;VarDP=71 GT:AD:DP:GQ:PL:SB 1/1:0,71,0:71:99:2275,213,0,2275,213,2275:0,0,36,35 +chrX 2487002 . C . . END=2487354 GT:DP:GQ:MIN_DP:PL 0/0:81:99:81:0,120,1800 +chrX 2487355 . C A, 2508.06 . AS_QUALapprox=|2522|0;AS_VarDP=1|77|0;BaseQRankSum=-0.391;DP=79;MQRankSum=0.000;QUALapprox=2522;RAW_GT_COUNT=0,0,1;RAW_MQandDP=284400,79;ReadPosRankSum=-1.666;VarDP=78 GT:AD:DP:GQ:PL:SB 1/1:1,77,0:78:99:2522,200,0,2525,232,2556:0,1,37,40 +chrX 2487356 . G . . END=2488488 GT:DP:GQ:MIN_DP:PL 0/0:60:74:60:0,74,1151 +chrX 2488489 . A G, 1906.06 . AS_QUALapprox=|1920|0;AS_VarDP=0|60|0;DP=61;QUALapprox=1920;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:1920,180,0,1920,180,1920:0,0,33,27 +chrX 2488490 . A . . END=2491065 GT:DP:GQ:MIN_DP:PL 0/0:63:66:63:0,66,1523 +chrX 2491066 . G GT, 573.03 . AS_QUALapprox=|587|0;AS_VarDP=1|32|0;BaseQRankSum=1.969;DP=51;MQRankSum=-0.211;QUALapprox=587;RAW_GT_COUNT=0,0,1;RAW_MQandDP=175936,51;ReadPosRankSum=1.103;VarDP=33 GT:AD:DP:GQ:PL:SB 1/1:1,32,0:33:84:587,84,0,590,94,600:0,1,14,18 +chrX 2491067 . T . . END=2491087 GT:DP:GQ:MIN_DP:PL 0/0:59:84:59:0,84,1260 +chrX 2491088 . G . . END=2491089 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,802 +chrX 2491090 . G . . END=2491446 GT:DP:GQ:MIN_DP:PL 0/0:61:60:61:0,60,1299 +chrX 2491447 . T C, 1794.06 . AS_QUALapprox=|1808|0;AS_VarDP=0|55|0;DP=55;QUALapprox=1808;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1808,165,0,1808,165,1808:0,0,26,29 +chrX 2491448 . G . . END=2493750 GT:DP:GQ:MIN_DP:PL 0/0:59:57:59:0,57,1174 +chrX 2493751 . T C, 1987.06 . AS_QUALapprox=|2001|0;AS_VarDP=0|62|0;DP=65;QUALapprox=2001;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230554,65;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:0,62,0:62:99:2001,185,0,2001,185,2001:0,0,30,32 +chrX 2493752 . C . . END=2494571 GT:DP:GQ:MIN_DP:PL 0/0:64:94:64:0,94,1564 +chrX 2494572 . A G, 1530.06 . AS_QUALapprox=|1544|0;AS_VarDP=0|47|0;DP=49;QUALapprox=1544;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1544,141,0,1544,141,1544:0,0,25,22 +chrX 2494573 . T . . END=2495609 GT:DP:GQ:MIN_DP:PL 0/0:63:63:63:0,63,1539 +chrX 2495610 . G GT, 1049.60 . AS_QUALapprox=|1057|0;AS_VarDP=35|34|0;BaseQRankSum=1.508;DP=71;MQRankSum=0.000;QUALapprox=1057;RAW_GT_COUNT=0,1,0;RAW_MQandDP=255600,71;ReadPosRankSum=-0.468;VarDP=69 GT:AD:DP:GQ:PL:SB 0/1:35,34,0:69:99:1057,0,1103,1163,1206,2368:14,21,17,17 +chrX 2495611 . T . . END=2497105 GT:DP:GQ:MIN_DP:PL 0/0:61:82:61:0,82,1101 +chrX 2497106 . G A, 787.64 . AS_QUALapprox=|795|0;AS_VarDP=38|30|0;BaseQRankSum=1.489;DP=70;MQRankSum=-1.959;QUALapprox=795;RAW_GT_COUNT=0,1,0;RAW_MQandDP=245703,70;ReadPosRankSum=-0.822;VarDP=68 GT:AD:DP:GQ:PL:SB 0/1:38,30,0:68:99:795,0,968,908,1057,1965:18,20,20,10 +chrX 2497107 . A . . END=2497191 GT:DP:GQ:MIN_DP:PL 0/0:74:99:74:0,120,1800 +chrX 2497192 . T C, 961.64 . AS_QUALapprox=|969|0;AS_VarDP=28|36|0;BaseQRankSum=-1.039;DP=65;MQRankSum=-1.339;QUALapprox=969;RAW_GT_COUNT=0,1,0;RAW_MQandDP=227703,65;ReadPosRankSum=1.266;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:28,36,0:64:99:969,0,741,1053,849,1902:15,13,20,16 +chrX 2497193 . G . . END=2498617 GT:DP:GQ:MIN_DP:PL 0/0:52:37:47:0,37,1292 +chrX 2498618 . T . . END=2498618 GT:DP:GQ:MIN_DP:PL 0/0:52:18:52:0,18,1290 +chrX 2498619 . A . . END=2498624 GT:DP:GQ:MIN_DP:PL 0/0:51:41:51:0,41,1278 +chrX 2498625 . G GAA, 354.60 . AS_QUALapprox=|362|0;AS_VarDP=15|17|0;BaseQRankSum=-0.671;DP=42;MQRankSum=0.135;QUALapprox=362;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147200,42;ReadPosRankSum=-3.119;VarDP=32 GT:AD:DP:GQ:PL:SB 0/1:15,17,0:32:99:362,0,379,407,429,836:8,7,7,10 +chrX 2498626 . A . . END=2498750 GT:DP:GQ:MIN_DP:PL 0/0:49:73:49:0,73,1121 +chrX 2498751 . C T, 471.64 . AS_QUALapprox=|479|0;AS_VarDP=25|19|0;BaseQRankSum=-0.641;DP=44;MQRankSum=0.000;QUALapprox=479;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=-0.261;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:25,19,0:44:99:479,0,667,553,724,1278:12,13,10,9 +chrX 2498752 . T . . END=2499125 GT:DP:GQ:MIN_DP:PL 0/0:56:98:56:0,98,1524 +chrX 2499126 . A G, 776.64 . AS_QUALapprox=|784|0;AS_VarDP=25|28|0;BaseQRankSum=-0.896;DP=54;MQRankSum=0.000;QUALapprox=784;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=-0.535;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:25,28,0:53:99:784,0,700,859,784,1643:16,9,11,17 +chrX 2499127 . T . . END=2499995 GT:DP:GQ:MIN_DP:PL 0/0:61:86:61:0,86,1348 +chrX 2499996 . A C, 1211.64 . AS_QUALapprox=|1219|0;AS_VarDP=22|43|0;BaseQRankSum=-1.435;DP=69;MQRankSum=0.000;QUALapprox=1219;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=1.186;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:22,43,0:65:99:1219,0,544,1285,674,1958:9,13,17,26 +chrX 2499997 . G . . END=2500496 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,106,1771 +chrX 2500497 . C T, 599.64 . AS_QUALapprox=|607|0;AS_VarDP=27|24|0;BaseQRankSum=-0.778;DP=52;MQRankSum=0.000;QUALapprox=607;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=-0.736;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:27,24,0:51:99:607,0,716,687,788,1475:10,17,8,16 +chrX 2500498 . T . . END=2500641 GT:DP:GQ:MIN_DP:PL 0/0:46:80:46:0,80,1056 +chrX 2500642 . A AG, 795.03 . AS_QUALapprox=|809|0;AS_VarDP=0|19|0;DP=20;QUALapprox=809;RAW_GT_COUNT=0,0,1;RAW_MQandDP=72000,20;VarDP=19 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,19,0:19:57:0|1:2500642_A_AG:809,57,0,809,57,809:2500642:0,0,4,15 +chrX 2500643 . G . . END=2500653 GT:DP:GQ:MIN_DP:PL 0/0:19:51:19:0,51,490 +chrX 2500654 . GC G, 904.03 . AS_QUALapprox=|918|0;AS_VarDP=0|22|0;DP=22;QUALapprox=918;RAW_GT_COUNT=0,0,1;RAW_MQandDP=79200,22;VarDP=22 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,22,0:22:66:0|1:2500642_A_AG:918,66,0,918,66,918:2500642:0,0,4,18 +chrX 2500656 . C . . END=2500663 GT:DP:GQ:MIN_DP:PL 0/0:21:48:21:0,48,720 +chrX 2500664 . C A, 196.64 . AS_QUALapprox=|204|0;AS_VarDP=10|9|0;BaseQRankSum=-0.287;DP=22;MQRankSum=0.000;QUALapprox=204;RAW_GT_COUNT=0,1,0;RAW_MQandDP=79200,22;ReadPosRankSum=-1.715;VarDP=19 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:10,9,0:19:99:0|1:2500642_A_AG:204,0,246,234,272,506:2500642:1,9,0,9 +chrX 2500665 . A . . END=2500665 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,348 +chrX 2500666 . C . . END=2500671 GT:DP:GQ:MIN_DP:PL 0/0:36:54:36:0,54,534 +chrX 2500672 . G . . END=2500672 GT:DP:GQ:MIN_DP:PL 0/0:26:0:26:0,0,349 +chrX 2500673 . C . . END=2500674 GT:DP:GQ:MIN_DP:PL 0/0:27:69:27:0,69,1035 +chrX 2500675 . A . . END=2500675 GT:DP:GQ:MIN_DP:PL 0/0:23:0:23:0,0,273 +chrX 2500676 . C . . END=2500676 GT:DP:GQ:MIN_DP:PL 0/0:24:47:24:0,47,684 +chrX 2500677 . A . . END=2500677 GT:DP:GQ:MIN_DP:PL 0/0:23:0:23:0,0,325 +chrX 2500678 . C . . END=2500679 GT:DP:GQ:MIN_DP:PL 0/0:34:75:34:0,75,1125 +chrX 2500680 . T . . END=2500680 GT:DP:GQ:MIN_DP:PL 0/0:29:0:29:0,0,284 +chrX 2500681 . C . . END=2500681 GT:DP:GQ:MIN_DP:PL 0/0:27:75:27:0,75,1125 +chrX 2500682 . G . . END=2500683 GT:DP:GQ:MIN_DP:PL 0/0:23:0:23:0,0,473 +chrX 2500684 . C . . END=2500688 GT:DP:GQ:MIN_DP:PL 0/0:34:72:34:0,72,1080 +chrX 2500689 . G . . END=2500689 GT:DP:GQ:MIN_DP:PL 0/0:27:0:27:0,0,413 +chrX 2500690 . C . . END=2500692 GT:DP:GQ:MIN_DP:PL 0/0:34:75:34:0,75,1125 +chrX 2500693 . A . . END=2500694 GT:DP:GQ:MIN_DP:PL 0/0:25:0:25:0,0,548 +chrX 2500695 . C . . END=2500698 GT:DP:GQ:MIN_DP:PL 0/0:34:75:34:0,75,1125 +chrX 2500699 . A . . END=2500699 GT:DP:GQ:MIN_DP:PL 0/0:29:0:29:0,0,511 +chrX 2500700 . C . . END=2500701 GT:DP:GQ:MIN_DP:PL 0/0:30:45:30:0,45,774 +chrX 2500702 . T . . END=2500702 GT:DP:GQ:MIN_DP:PL 0/0:26:0:26:0,0,564 +chrX 2500703 . C . . END=2500719 GT:DP:GQ:MIN_DP:PL 0/0:25:26:25:0,26,650 +chrX 2500720 . T . . END=2500720 GT:DP:GQ:MIN_DP:PL 0/0:29:0:29:0,0,729 +chrX 2500721 . C . . END=2501037 GT:DP:GQ:MIN_DP:PL 0/0:52:23:32:0,23,913 +chrX 2501038 . G . . END=2501038 GT:DP:GQ:MIN_DP:PL 0/0:52:0:52:0,0,1158 +chrX 2501039 . A . . END=2501051 GT:DP:GQ:MIN_DP:PL 0/0:59:95:59:0,95,1354 +chrX 2501052 . T . . END=2501052 GT:DP:GQ:MIN_DP:PL 0/0:57:9:57:0,9,1405 +chrX 2501053 . G . . END=2501065 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,100,1364 +chrX 2501066 . A . . END=2501066 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,902 +chrX 2501067 . A . . END=2501131 GT:DP:GQ:MIN_DP:PL 0/0:45:22:43:0,22,971 +chrX 2501132 . A G, 403.64 . AS_QUALapprox=|411|0;AS_VarDP=13|15|0;BaseQRankSum=0.686;DP=31;MQRankSum=1.146;QUALapprox=411;RAW_GT_COUNT=0,1,0;RAW_MQandDP=111481,31;ReadPosRankSum=1.659;VarDP=28 GT:AD:DP:GQ:PL:SB 0/1:13,15,0:28:99:411,0,333,449,378,827:6,7,1,14 +chrX 2501133 . C . . END=2501171 GT:DP:GQ:MIN_DP:PL 0/0:19:22:19:0,22,561 +chrX 2501172 . A . . END=2501172 GT:DP:GQ:MIN_DP:PL 0/0:19:17:19:0,17,440 +chrX 2501173 . C . . END=2501219 GT:DP:GQ:MIN_DP:PL 0/0:18:36:14:0,36,451 +chrX 2501220 . A C,AC, 68.60 . AS_QUALapprox=|18|76|0;AS_VarDP=4|3|4|0;BaseQRankSum=-0.341;DP=17;MQRankSum=0.000;QUALapprox=76;RAW_GT_COUNT=0,1,0;RAW_MQandDP=61200,17;ReadPosRankSum=-0.361;VarDP=11 GT:AD:DP:GQ:PL:SB 0/2:4,3,4,0:11:58:76,58,311,0,59,131,111,247,137,302:0,4,0,7 +chrX 2501221 . C . . END=2501278 GT:DP:GQ:MIN_DP:PL 0/0:20:25:18:0,25,511 +chrX 2501279 . T . . END=2501279 GT:DP:GQ:MIN_DP:PL 0/0:18:19:18:0,19,516 +chrX 2501280 . C . . END=2501282 GT:DP:GQ:MIN_DP:PL 0/0:21:25:20:0,25,606 +chrX 2501283 . G . . END=2501283 GT:DP:GQ:MIN_DP:PL 0/0:21:3:21:0,3,561 +chrX 2501284 . A . . END=2501319 GT:DP:GQ:MIN_DP:PL 0/0:17:22:15:0,22,477 +chrX 2501320 . C . . END=2501322 GT:DP:GQ:MIN_DP:PL 0/0:18:0:18:0,0,462 +chrX 2501323 . C . . END=2501323 GT:DP:GQ:MIN_DP:PL 0/0:18:29:18:0,29,556 +chrX 2501324 . A . . END=2501324 GT:DP:GQ:MIN_DP:PL 0/0:19:0:19:0,0,422 +chrX 2501325 . C . . END=2501325 GT:DP:GQ:MIN_DP:PL 0/0:18:45:18:0,45,675 +chrX 2501326 . A . . END=2501330 GT:DP:GQ:MIN_DP:PL 0/0:17:0:17:0,0,264 +chrX 2501331 . C . . END=2501335 GT:DP:GQ:MIN_DP:PL 0/0:24:37:22:0,37,696 +chrX 2501336 . A . . END=2501337 GT:DP:GQ:MIN_DP:PL 0/0:20:0:20:0,0,442 +chrX 2501338 . C . . END=2501363 GT:DP:GQ:MIN_DP:PL 0/0:24:31:22:0,31,665 +chrX 2501364 . T . . END=2501364 GT:DP:GQ:MIN_DP:PL 0/0:23:19:23:0,19,580 +chrX 2501365 . C . . END=2501437 GT:DP:GQ:MIN_DP:PL 0/0:31:29:28:0,29,764 +chrX 2501438 . T . . END=2501438 GT:DP:GQ:MIN_DP:PL 0/0:31:9:31:0,9,799 +chrX 2501439 . T . . END=2501444 GT:DP:GQ:MIN_DP:PL 0/0:32:40:32:0,40,732 +chrX 2501445 . T . . END=2501445 GT:DP:GQ:MIN_DP:PL 0/0:27:7:27:0,7,670 +chrX 2501446 . C . . END=2501511 GT:DP:GQ:MIN_DP:PL 0/0:33:38:29:0,38,769 +chrX 2501512 . G . . END=2501512 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,957 +chrX 2501513 . C . . END=2501522 GT:DP:GQ:MIN_DP:PL 0/0:40:22:39:0,22,983 +chrX 2501523 . T . . END=2501523 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,1017 +chrX 2501524 . A . . END=2501595 GT:DP:GQ:MIN_DP:PL 0/0:42:24:35:0,24,878 +chrX 2501596 . T . . END=2501596 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,890 +chrX 2501597 . G . . END=2501608 GT:DP:GQ:MIN_DP:PL 0/0:38:51:38:0,51,968 +chrX 2501609 . A . . END=2501609 GT:DP:GQ:MIN_DP:PL 0/0:40:7:40:0,7,973 +chrX 2501610 . A . . END=2501626 GT:DP:GQ:MIN_DP:PL 0/0:37:37:29:0,37,788 +chrX 2501627 . A . . END=2501627 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,540 +chrX 2501628 . C . . END=2501677 GT:DP:GQ:MIN_DP:PL 0/0:31:21:29:0,21,764 +chrX 2501678 . T . . END=2501678 GT:DP:GQ:MIN_DP:PL 0/0:32:7:32:0,7,814 +chrX 2501679 . C . . END=2501734 GT:DP:GQ:MIN_DP:PL 0/0:37:37:34:0,37,817 +chrX 2501735 . T . . END=2501735 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,1173 +chrX 2501736 . C . . END=2501819 GT:DP:GQ:MIN_DP:PL 0/0:46:22:45:0,22,1157 +chrX 2501820 . C G, 364.64 . AS_QUALapprox=|372|0;AS_VarDP=15|15|0;BaseQRankSum=-0.576;DP=30;MQRankSum=0.000;QUALapprox=372;RAW_GT_COUNT=0,1,0;RAW_MQandDP=108000,30;ReadPosRankSum=-0.499;VarDP=30 GT:AD:DP:GQ:PL:SB 0/1:15,15,0:30:99:372,0,412,417,456,873:6,9,4,11 +chrX 2501821 . A . . END=2502680 GT:DP:GQ:MIN_DP:PL 0/0:48:32:34:0,32,901 +chrX 2502681 . A T, 620.64 . AS_QUALapprox=|628|0;AS_VarDP=23|24|0;BaseQRankSum=1.244;DP=50;MQRankSum=0.000;QUALapprox=628;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=-0.490;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:23,24,0:47:99:628,0,568,697,640,1337:9,14,11,13 +chrX 2502682 . C . . END=2503034 GT:DP:GQ:MIN_DP:PL 0/0:64:82:64:0,82,1195 +chrX 2503035 . A T, 1023.64 . AS_QUALapprox=|1031|0;AS_VarDP=34|27|0;BaseQRankSum=0.350;DP=64;MQRankSum=0.000;QUALapprox=1031;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=1.300;VarDP=61 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:34,27,0:61:99:0|1:2503035_A_T:1031,0,1346,1133,1427,2560:2503035:19,15,13,14 +chrX 2503036 . T . . END=2503036 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 2503037 . G T, 1023.64 . AS_QUALapprox=|1031|0;AS_VarDP=34|27|0;BaseQRankSum=-0.794;DP=62;MQRankSum=0.000;QUALapprox=1031;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=1.068;VarDP=61 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:34,27,0:61:99:0|1:2503035_A_T:1031,0,1346,1133,1427,2560:2503035:19,15,13,14 +chrX 2503038 . G . . END=2503228 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 2503229 . CT C, 456.60 . AS_QUALapprox=|464|0;AS_VarDP=21|24|0;BaseQRankSum=1.246;DP=60;MQRankSum=0.127;QUALapprox=464;RAW_GT_COUNT=0,1,0;RAW_MQandDP=213408,60;ReadPosRankSum=-1.104;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:21,24,0:45:99:464,0,373,527,443,970:10,11,9,15 +chrX 2503231 . T . . END=2503268 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,112,1563 +chrX 2503269 . T C, 1813.06 . AS_QUALapprox=|1827|0;AS_VarDP=0|55|0;DP=56;QUALapprox=1827;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1827,165,0,1827,165,1827:0,0,23,32 +chrX 2503270 . A . . END=2503509 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,112,1800 +chrX 2503510 . A G, 638.64 . AS_QUALapprox=|646|0;AS_VarDP=25|23|0;BaseQRankSum=2.202;DP=48;MQRankSum=0.000;QUALapprox=646;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=0.165;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:25,23,0:48:99:646,0,640,720,709,1429:12,13,11,12 +chrX 2503511 . G . . END=2504075 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,114,1510 +chrX 2504076 . C CCTTG, 977.60 . AS_QUALapprox=|985|0;AS_VarDP=33|26|0;BaseQRankSum=-0.524;DP=64;MQRankSum=0.000;QUALapprox=985;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=-2.291;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:33,26,0:59:99:985,0,1296,1085,1375,2459:17,16,13,13 +chrX 2504077 . C . . END=2504104 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 2504105 . G A, 617.64 . AS_QUALapprox=|625|0;AS_VarDP=32|23|0;BaseQRankSum=0.758;DP=58;MQRankSum=0.000;QUALapprox=625;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=1.630;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:32,23,0:55:99:625,0,887,720,957,1677:17,15,9,14 +chrX 2504106 . T . . END=2504741 GT:DP:GQ:MIN_DP:PL 0/0:62:83:62:0,83,1134 +chrX 2504742 . C CA, 393.60 . AS_QUALapprox=|401|0;AS_VarDP=19|20|0;BaseQRankSum=0.290;DP=51;MQRankSum=0.000;QUALapprox=401;RAW_GT_COUNT=0,1,0;RAW_MQandDP=181600,51;ReadPosRankSum=0.815;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:19,20,0:39:99:401,0,381,458,441,899:8,11,8,12 +chrX 2504743 . A . . END=2505325 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 2505326 . G A, 656.64 . AS_QUALapprox=|664|0;AS_VarDP=37|26|0;BaseQRankSum=0.765;DP=64;MQRankSum=0.000;QUALapprox=664;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=-0.580;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:37,26,0:63:99:664,0,981,775,1059,1834:23,14,17,9 +chrX 2505327 . C . . END=2505597 GT:DP:GQ:MIN_DP:PL 0/0:77:99:77:0,120,1800 +chrX 2505598 . TTTTTG T, 1012.60 . AS_QUALapprox=|1020|0;AS_VarDP=25|27|0;BaseQRankSum=0.936;DP=71;MQRankSum=0.000;QUALapprox=1020;RAW_GT_COUNT=0,1,0;RAW_MQandDP=255600,71;ReadPosRankSum=-0.431;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:25,27,0:52:99:1020,0,968,1095,1050,2145:12,13,14,13 +chrX 2505604 . T . . END=2505690 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 2505691 . T C, 1842.06 . AS_QUALapprox=|1856|0;AS_VarDP=0|57|0;DP=58;QUALapprox=1856;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1856,171,0,1856,171,1856:0,0,32,25 +chrX 2505692 . G . . END=2507387 GT:DP:GQ:MIN_DP:PL 0/0:60:93:60:0,93,1548 +chrX 2507388 . T TG, 879.60 . AS_QUALapprox=|887|0;AS_VarDP=20|33|0;BaseQRankSum=0.465;DP=57;MQRankSum=0.000;QUALapprox=887;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=1.028;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:20,33,0:53:99:887,0,470,947,569,1516:12,8,16,17 +chrX 2507389 . G . . END=2508860 GT:DP:GQ:MIN_DP:PL 0/0:59:48:59:0,48,1279 +chrX 2508861 . A . . END=2508861 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,881 +chrX 2508862 . C . . END=2509158 GT:DP:GQ:MIN_DP:PL 0/0:59:94:59:0,94,1359 +chrX 2509159 . A AT, 472.60 . AS_QUALapprox=|480|0;AS_VarDP=31|22|0;BaseQRankSum=0.308;DP=59;MQRankSum=0.000;QUALapprox=480;RAW_GT_COUNT=0,1,0;RAW_MQandDP=211589,59;ReadPosRankSum=0.650;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:31,22,0:53:99:480,0,772,573,838,1411:14,17,8,14 +chrX 2509160 . T . . END=2509284 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 2509285 . A G, 1077.64 . AS_QUALapprox=|1085|0;AS_VarDP=26|42|0;BaseQRankSum=-1.668;DP=69;MQRankSum=-0.757;QUALapprox=1085;RAW_GT_COUNT=0,1,0;RAW_MQandDP=247825,69;ReadPosRankSum=0.240;VarDP=68 GT:AD:DP:GQ:PL:SB 0/1:26,42,0:68:99:1085,0,660,1163,786,1949:10,16,22,20 +chrX 2509286 . T . . END=2509344 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 2509345 . AC A, 1013.60 . AS_QUALapprox=|1021|0;AS_VarDP=25|32|0;BaseQRankSum=-0.447;DP=58;MQRankSum=0.000;QUALapprox=1021;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=0.629;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:25,32,0:57:99:1021,0,760,1097,857,1953:15,10,16,16 +chrX 2509347 . C . . END=2509430 GT:DP:GQ:MIN_DP:PL 0/0:48:77:48:0,77,917 +chrX 2509431 . T TAA,TAAA, 902.02 . AS_QUALapprox=|817|758|0;AS_VarDP=1|11|9|0;BaseQRankSum=-0.579;DP=49;MQRankSum=-0.162;QUALapprox=919;RAW_GT_COUNT=0,0,1;RAW_MQandDP=164226,49;ReadPosRankSum=-1.406;VarDP=21 GT:AD:DP:GQ:PL:SB 1/2:1,11,9,0:21:99:919,176,102,221,0,161,686,198,243,637:1,0,11,9 +chrX 2509432 . A . . END=2509976 GT:DP:GQ:MIN_DP:PL 0/0:62:66:62:0,66,1047 +chrX 2509977 . T TA, 171.60 . AS_QUALapprox=|179|0;AS_VarDP=5|14|0;BaseQRankSum=-0.088;DP=49;MQRankSum=-0.781;QUALapprox=179;RAW_GT_COUNT=0,1,0;RAW_MQandDP=171485,49;ReadPosRankSum=-0.935;VarDP=19 GT:AD:DP:GQ:PL:SB 0/1:5,14,0:19:40:179,0,40,194,79,273:2,3,6,8 +chrX 2509978 . A . . END=2510043 GT:DP:GQ:MIN_DP:PL 0/0:43:72:43:0,72,1080 +chrX 2510044 . T C, 546.64 . AS_QUALapprox=|554|0;AS_VarDP=22|16|0;BaseQRankSum=0.000;DP=38;MQRankSum=0.000;QUALapprox=554;RAW_GT_COUNT=0,1,0;RAW_MQandDP=136800,38;ReadPosRankSum=-0.921;VarDP=38 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,16,0:38:99:0|1:2510044_T_C:554,0,855,621,903,1524:2510044:13,9,5,11 +chrX 2510045 . G . . END=2510075 GT:DP:GQ:MIN_DP:PL 0/0:38:79:38:0,79,1186 +chrX 2510076 . T A, 577.64 . AS_QUALapprox=|585|0;AS_VarDP=22|17|0;BaseQRankSum=1.261;DP=39;MQRankSum=0.000;QUALapprox=585;RAW_GT_COUNT=0,1,0;RAW_MQandDP=140400,39;ReadPosRankSum=-1.997;VarDP=39 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,17,0:39:99:0|1:2510044_T_C:585,0,852,651,903,1555:2510044:14,8,5,12 +chrX 2510077 . C . . END=2510499 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,101,1311 +chrX 2510500 . A G, 857.64 . AS_QUALapprox=|865|0;AS_VarDP=23|33|0;BaseQRankSum=-0.200;DP=57;MQRankSum=0.000;QUALapprox=865;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-0.167;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:23,33,0:56:99:865,0,552,933,650,1583:10,13,16,17 +chrX 2510501 . T . . END=2510847 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 2510848 . T C, 668.64 . AS_QUALapprox=|676|0;AS_VarDP=37|19|0;BaseQRankSum=-0.140;DP=58;MQRankSum=0.000;QUALapprox=676;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=0.080;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:37,19,0:56:99:0|1:2510848_T_C:676,0,1454,787,1511,2298:2510848:17,20,10,9 +chrX 2510849 . G A, 668.64 . AS_QUALapprox=|676|0;AS_VarDP=37|19|0;BaseQRankSum=0.338;DP=58;MQRankSum=0.000;QUALapprox=676;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=0.190;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:37,19,0:56:99:0|1:2510848_T_C:676,0,1454,787,1511,2298:2510848:17,20,10,9 +chrX 2510850 . G . . END=2510995 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 2510996 . A AT, 359.60 . AS_QUALapprox=|367|0;AS_VarDP=14|19|0;BaseQRankSum=-0.151;DP=54;MQRankSum=-0.797;QUALapprox=367;RAW_GT_COUNT=0,1,0;RAW_MQandDP=193825,54;ReadPosRankSum=-0.947;VarDP=33 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:14,19,0:33:99:0|1:2510996_A_AT:367,0,215,408,271,679:2510996:4,10,14,5 +chrX 2510997 . T . . END=2512185 GT:DP:GQ:MIN_DP:PL 0/0:50:43:47:0,43,1081 +chrX 2512186 . A T, 648.64 . AS_QUALapprox=|656|0;AS_VarDP=28|24|0;BaseQRankSum=1.582;DP=58;MQRankSum=0.000;QUALapprox=656;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-0.441;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:28,24,0:52:99:656,0,747,741,819,1560:13,15,10,14 +chrX 2512187 . T . . END=2512414 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 2512415 . C T, 746.64 . AS_QUALapprox=|754|0;AS_VarDP=30|28|0;BaseQRankSum=1.221;DP=62;MQRankSum=0.000;QUALapprox=754;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=-1.541;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:30,28,0:58:99:754,0,784,844,868,1712:13,17,15,13 +chrX 2512416 . C . . END=2512445 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 2512446 . T A, 921.64 . AS_QUALapprox=|929|0;AS_VarDP=30|34|0;BaseQRankSum=0.249;DP=66;MQRankSum=0.000;QUALapprox=929;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=-2.228;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:30,34,0:64:99:929,0,790,1020,893,1912:14,16,18,16 +chrX 2512447 . G . . END=2512861 GT:DP:GQ:MIN_DP:PL 0/0:43:22:27:0,22,749 +chrX 2512862 . T . . END=2512862 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,268 +chrX 2512863 . G . . END=2512867 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 2512868 . T . . END=2512868 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,70 +chrX 2512869 . G . . END=2512873 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 2512874 . T . . END=2512874 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,149 +chrX 2512875 . G . . END=2516480 GT:DP:GQ:MIN_DP:PL 0/0:59:41:59:0,41,1119 +chrX 2516481 . C . . END=2516481 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,1075 +chrX 2516482 . A . . END=2516487 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 2516488 . C A, 104.64 . AS_QUALapprox=|112|0;AS_VarDP=40|11|0;BaseQRankSum=-0.825;DP=55;MQRankSum=0.572;QUALapprox=112;RAW_GT_COUNT=0,1,0;RAW_MQandDP=195316,55;ReadPosRankSum=1.261;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:40,11,0:51:99:112,0,985,229,1016,1245:21,19,0,11 +chrX 2516489 . A . . END=2517655 GT:DP:GQ:MIN_DP:PL 0/0:58:47:58:0,47,990 +chrX 2517656 . C . . END=2517656 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,1136 +chrX 2517657 . CA C,CAAA, 1236.02 . AS_QUALapprox=|995|249|0;AS_VarDP=0|26|9|0;DP=43;QUALapprox=1253;RAW_GT_COUNT=0,0,1;RAW_MQandDP=148301,43;VarDP=35 GT:AD:DP:GQ:PL:SB 1/2:0,26,9,0:35:99:1253,258,341,1023,0,1004,1279,348,1031,1354:0,0,9,26 +chrX 2517659 . A . . END=2517671 GT:DP:GQ:MIN_DP:PL 0/0:40:90:40:0,90,1350 +chrX 2517672 . A . . END=2517672 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,1137 +chrX 2517673 . A G, 1014.64 . AS_QUALapprox=|1022|0;AS_VarDP=13|28|0;BaseQRankSum=-0.616;DP=44;MQRankSum=1.520;QUALapprox=1022;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151901,44;ReadPosRankSum=1.163;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:13,28,0:41:99:1022,0,424,1061,508,1569:3,10,7,21 +chrX 2517674 . A . . END=2517675 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,99,1485 +chrX 2517676 . A . . END=2517677 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,1207 +chrX 2517678 . A . . END=2517809 GT:DP:GQ:MIN_DP:PL 0/0:55:49:55:0,49,1529 +chrX 2517810 . CCTTTCTTTCTCTTT C, 625.60 . AS_QUALapprox=|633|0;AS_VarDP=27|17|0;BaseQRankSum=0.015;DP=51;MQRankSum=0.000;QUALapprox=633;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-0.282;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:27,17,0:44:99:633,0,1052,715,1104,1818:13,14,5,12 +chrX 2517825 . C . . END=2517894 GT:DP:GQ:MIN_DP:PL 0/0:51:86:51:0,86,1355 +chrX 2517895 . T G, 445.64 . AS_QUALapprox=|453|0;AS_VarDP=33|18|0;BaseQRankSum=1.565;DP=52;MQRankSum=0.780;QUALapprox=453;RAW_GT_COUNT=0,1,0;RAW_MQandDP=185625,52;ReadPosRankSum=-0.118;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:33,18,0:51:99:453,0,878,552,932,1483:14,19,8,10 +chrX 2517896 . T . . END=2517948 GT:DP:GQ:MIN_DP:PL 0/0:30:60:30:0,60,900 +chrX 2517949 . C T, 214.64 . AS_QUALapprox=|222|0;AS_VarDP=18|9|0;BaseQRankSum=-0.396;DP=29;MQRankSum=0.000;QUALapprox=222;RAW_GT_COUNT=0,1,0;RAW_MQandDP=104400,29;ReadPosRankSum=0.026;VarDP=27 GT:AD:DP:GQ:PL:SB 0/1:18,9,0:27:99:222,0,517,276,544,820:4,14,2,7 +chrX 2517950 . C . . END=2518161 GT:DP:GQ:MIN_DP:PL 0/0:48:63:48:0,63,1032 +chrX 2518162 . C G, 691.64 . AS_QUALapprox=|699|0;AS_VarDP=25|25|0;BaseQRankSum=0.485;DP=54;MQRankSum=0.000;QUALapprox=699;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=-0.281;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:25,25,0:50:99:699,0,689,774,764,1538:8,17,16,9 +chrX 2518163 . T . . END=2518205 GT:DP:GQ:MIN_DP:PL 0/0:52:87:52:0,87,1588 +chrX 2518206 . G T, 820.64 . AS_QUALapprox=|828|0;AS_VarDP=20|30|0;BaseQRankSum=-2.093;DP=57;MQRankSum=0.000;QUALapprox=828;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-1.100;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:20,30,0:50:99:828,0,545,888,635,1523:9,11,19,11 +chrX 2518207 . T . . END=2518392 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 2518393 . C T, 961.64 . AS_QUALapprox=|969|0;AS_VarDP=24|35|0;BaseQRankSum=0.089;DP=60;MQRankSum=0.000;QUALapprox=969;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=1.884;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:24,35,0:59:99:969,0,607,1041,712,1753:13,11,19,16 +chrX 2518394 . G . . END=2518728 GT:DP:GQ:MIN_DP:PL 0/0:48:73:48:0,73,1290 +chrX 2518729 . CA C, 382.60 . AS_QUALapprox=|390|0;AS_VarDP=14|20|0;BaseQRankSum=1.007;DP=41;MQRankSum=0.000;QUALapprox=390;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147600,41;ReadPosRankSum=-0.627;VarDP=34 GT:AD:DP:GQ:PL:SB 0/1:14,20,0:34:99:390,0,241,432,301,733:4,10,14,6 +chrX 2518731 . A . . END=2518955 GT:DP:GQ:MIN_DP:PL 0/0:75:99:75:0,100,1414 +chrX 2518956 . T C, 1085.64 . AS_QUALapprox=|1093|0;AS_VarDP=35|42|0;BaseQRankSum=-1.521;DP=79;MQRankSum=0.000;QUALapprox=1093;RAW_GT_COUNT=0,1,0;RAW_MQandDP=284400,79;ReadPosRankSum=-0.368;VarDP=77 GT:AD:DP:GQ:PL:SB 0/1:35,42,0:77:99:1093,0,936,1199,1061,2260:21,14,21,21 +chrX 2518957 . G . . END=2519744 GT:DP:GQ:MIN_DP:PL 0/0:63:94:63:0,94,1255 +chrX 2519745 . C . . END=2519745 GT:DP:GQ:MIN_DP:PL 0/0:39:8:39:0,8,977 +chrX 2519746 . T . . END=2519780 GT:DP:GQ:MIN_DP:PL 0/0:44:61:44:0,61,1167 +chrX 2519781 . G . . END=2519781 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,923 +chrX 2519782 . T . . END=2519824 GT:DP:GQ:MIN_DP:PL 0/0:50:71:50:0,71,1344 +chrX 2519825 . T . . END=2519825 GT:DP:GQ:MIN_DP:PL 0/0:46:13:46:0,13,997 +chrX 2519826 . A . . END=2519917 GT:DP:GQ:MIN_DP:PL 0/0:36:21:35:0,21,887 +chrX 2519918 . G . . END=2519918 GT:DP:GQ:MIN_DP:PL 0/0:34:19:34:0,19,805 +chrX 2519919 . A . . END=2519951 GT:DP:GQ:MIN_DP:PL 0/0:34:77:34:0,77,1013 +chrX 2519952 . G . . END=2519952 GT:DP:GQ:MIN_DP:PL 0/0:23:0:23:0,0,541 +chrX 2519953 . C . . END=2520019 GT:DP:GQ:MIN_DP:PL 0/0:30:20:26:0,20,684 +chrX 2520020 . T . . END=2520021 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,640 +chrX 2520022 . T . . END=2520098 GT:DP:GQ:MIN_DP:PL 0/0:40:37:40:0,37,1022 +chrX 2520099 . A . . END=2520099 GT:DP:GQ:MIN_DP:PL 0/0:43:16:43:0,16,1117 +chrX 2520100 . T . . END=2520158 GT:DP:GQ:MIN_DP:PL 0/0:40:42:40:0,42,1087 +chrX 2520159 . C . . END=2520159 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,954 +chrX 2520160 . T . . END=2520219 GT:DP:GQ:MIN_DP:PL 0/0:35:31:34:0,31,884 +chrX 2520220 . CCAT C, 63.60 . AS_QUALapprox=|71|0;AS_VarDP=18|3|0;BaseQRankSum=-0.911;DP=25;MQRankSum=-0.060;QUALapprox=71;RAW_GT_COUNT=0,1,0;RAW_MQandDP=72272,25;ReadPosRankSum=-1.509;VarDP=21 GT:AD:DP:GQ:PL:SB 0/1:18,3,0:21:71:71,0,472,116,481,597:9,9,0,3 +chrX 2520224 . C . . END=2520227 GT:DP:GQ:MIN_DP:PL 0/0:27:69:27:0,69,924 +chrX 2520228 . A . . END=2520228 GT:DP:GQ:MIN_DP:PL 0/0:27:0:27:0,0,691 +chrX 2520229 . T . . END=2520230 GT:DP:GQ:MIN_DP:PL 0/0:28:46:28:0,46,787 +chrX 2520231 . C . . END=2520232 GT:DP:GQ:MIN_DP:PL 0/0:29:0:29:0,0,644 +chrX 2520233 . C . . END=2520234 GT:DP:GQ:MIN_DP:PL 0/0:29:52:29:0,52,919 +chrX 2520235 . C . . END=2520235 GT:DP:GQ:MIN_DP:PL 0/0:26:9:26:0,9,715 +chrX 2520236 . C . . END=2520240 GT:DP:GQ:MIN_DP:PL 0/0:30:55:30:0,55,892 +chrX 2520241 . T . . END=2520244 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,370 +chrX 2520245 . C . . END=2520245 GT:DP:GQ:MIN_DP:PL 0/0:30:21:30:0,21,874 +chrX 2520246 . A . . END=2520247 GT:DP:GQ:MIN_DP:PL 0/0:27:0:27:0,0,601 +chrX 2520248 . C . . END=2520249 GT:DP:GQ:MIN_DP:PL 0/0:30:52:30:0,52,868 +chrX 2520250 . T . . END=2520250 GT:DP:GQ:MIN_DP:PL 0/0:29:13:29:0,13,718 +chrX 2520251 . C . . END=2520252 GT:DP:GQ:MIN_DP:PL 0/0:30:52:30:0,52,878 +chrX 2520253 . T . . END=2520253 GT:DP:GQ:MIN_DP:PL 0/0:29:0:29:0,0,739 +chrX 2520254 . C . . END=2520261 GT:DP:GQ:MIN_DP:PL 0/0:30:28:29:0,28,778 +chrX 2520262 . C . . END=2520262 GT:DP:GQ:MIN_DP:PL 0/0:27:0:27:0,0,639 +chrX 2520263 . C . . END=2520267 GT:DP:GQ:MIN_DP:PL 0/0:33:29:33:0,29,883 +chrX 2520268 . T . . END=2520268 GT:DP:GQ:MIN_DP:PL 0/0:33:15:33:0,15,847 +chrX 2520269 . C . . END=2520284 GT:DP:GQ:MIN_DP:PL 0/0:35:27:29:0,27,788 +chrX 2520285 . A . . END=2520285 GT:DP:GQ:MIN_DP:PL 0/0:38:5:38:0,5,953 +chrX 2520286 . T . . END=2520299 GT:DP:GQ:MIN_DP:PL 0/0:40:62:40:0,62,1007 +chrX 2520300 . C . . END=2520300 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,704 +chrX 2520301 . T . . END=2520341 GT:DP:GQ:MIN_DP:PL 0/0:40:21:39:0,21,918 +chrX 2520342 . C . . END=2520342 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,695 +chrX 2520343 . T . . END=2520368 GT:DP:GQ:MIN_DP:PL 0/0:37:22:37:0,22,918 +chrX 2520369 . C . . END=2520369 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,722 +chrX 2520370 . T . . END=2520372 GT:DP:GQ:MIN_DP:PL 0/0:43:32:42:0,32,1161 +chrX 2520373 . C CCAT, 539.60 . AS_QUALapprox=|547|0;AS_VarDP=11|18|0;BaseQRankSum=0.101;DP=30;MQRankSum=-1.433;QUALapprox=547;RAW_GT_COUNT=0,1,0;RAW_MQandDP=89401,30;ReadPosRankSum=-1.304;VarDP=29 GT:AD:DP:GQ:PL:SB 0/1:11,18,0:29:99:547,0,331,578,378,956:5,6,7,11 +chrX 2520374 . C . . END=2520380 GT:DP:GQ:MIN_DP:PL 0/0:44:63:44:0,63,1330 +chrX 2520381 . A . . END=2520381 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,1050 +chrX 2520382 . T . . END=2520384 GT:DP:GQ:MIN_DP:PL 0/0:47:42:47:0,42,1274 +chrX 2520385 . C . . END=2520385 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,1028 +chrX 2520386 . C . . END=2520387 GT:DP:GQ:MIN_DP:PL 0/0:48:75:48:0,75,1429 +chrX 2520388 . T . . END=2520388 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,1116 +chrX 2520389 . C . . END=2520389 GT:DP:GQ:MIN_DP:PL 0/0:48:50:48:0,50,1400 +chrX 2520390 . A . . END=2520391 GT:DP:GQ:MIN_DP:PL 0/0:48:2:48:0,2,1245 +chrX 2520392 . C . . END=2520394 GT:DP:GQ:MIN_DP:PL 0/0:50:66:50:0,66,1439 +chrX 2520395 . C . . END=2520396 GT:DP:GQ:MIN_DP:PL 0/0:50:0:50:0,0,1113 +chrX 2520397 . T . . END=2520399 GT:DP:GQ:MIN_DP:PL 0/0:56:83:56:0,83,1526 +chrX 2520400 . C . . END=2520400 GT:DP:GQ:MIN_DP:PL 0/0:49:13:49:0,13,1214 +chrX 2520401 . C . . END=2520417 GT:DP:GQ:MIN_DP:PL 0/0:52:44:52:0,44,1201 +chrX 2520418 . T . . END=2520418 GT:DP:GQ:MIN_DP:PL 0/0:48:15:48:0,15,1269 +chrX 2520419 . C . . END=2520425 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,115,1446 +chrX 2520426 . C . . END=2520426 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,1085 +chrX 2520427 . T . . END=2520446 GT:DP:GQ:MIN_DP:PL 0/0:54:68:54:0,68,1214 +chrX 2520447 . C . . END=2520447 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,838 +chrX 2520448 . T . . END=2520458 GT:DP:GQ:MIN_DP:PL 0/0:48:26:45:0,26,1196 +chrX 2520459 . A . . END=2520459 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,1132 +chrX 2520460 . T . . END=2520473 GT:DP:GQ:MIN_DP:PL 0/0:47:31:45:0,31,1255 +chrX 2520474 . C . . END=2520474 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,1064 +chrX 2520475 . T . . END=2520477 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,104,1439 +chrX 2520478 . C . . END=2520478 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,889 +chrX 2520479 . C . . END=2520488 GT:DP:GQ:MIN_DP:PL 0/0:48:25:43:0,25,1195 +chrX 2520489 . C . . END=2520489 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,1015 +chrX 2520490 . T . . END=2520501 GT:DP:GQ:MIN_DP:PL 0/0:47:69:47:0,69,1167 +chrX 2520502 . C . . END=2520502 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,725 +chrX 2520503 . C . . END=2520512 GT:DP:GQ:MIN_DP:PL 0/0:47:31:45:0,31,1234 +chrX 2520513 . C . . END=2520513 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,1095 +chrX 2520514 . T . . END=2520519 GT:DP:GQ:MIN_DP:PL 0/0:44:60:44:0,60,1161 +chrX 2520520 . T . . END=2520520 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,1085 +chrX 2520521 . C . . END=2520524 GT:DP:GQ:MIN_DP:PL 0/0:43:54:43:0,54,1246 +chrX 2520525 . A . . END=2520525 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,944 +chrX 2520526 . T . . END=2520557 GT:DP:GQ:MIN_DP:PL 0/0:41:45:41:0,45,1086 +chrX 2520558 . G . . END=2520558 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,670 +chrX 2520559 . T . . END=2520569 GT:DP:GQ:MIN_DP:PL 0/0:39:73:39:0,73,1112 +chrX 2520570 . G . . END=2520570 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,772 +chrX 2520571 . C . . END=2520583 GT:DP:GQ:MIN_DP:PL 0/0:41:88:41:0,88,1102 +chrX 2520584 . A . . END=2520584 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,905 +chrX 2520585 . C . . END=2520585 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,120,1219 +chrX 2520586 . A . . END=2520586 GT:DP:GQ:MIN_DP:PL 0/0:41:10:41:0,10,957 +chrX 2520587 . C . . END=2522112 GT:DP:GQ:MIN_DP:PL 0/0:54:31:51:0,31,1213 +chrX 2522113 . C A,CA, 261.60 . AS_QUALapprox=|89|269|0;AS_VarDP=22|6|14|0;BaseQRankSum=1.705;DP=55;MQRankSum=0.000;QUALapprox=269;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-1.411;VarDP=42 GT:AD:DP:GQ:PL:SB 0/2:22,6,14,0:42:99:269,180,1418,0,386,356,347,1097,497,1145:11,11,13,7 +chrX 2522114 . A . . END=2523224 GT:DP:GQ:MIN_DP:PL 0/0:63:88:63:0,88,1443 +chrX 2523225 . CTT C, 163.60 . AS_QUALapprox=|171|0;AS_VarDP=12|8|0;BaseQRankSum=0.616;DP=50;MQRankSum=0.248;QUALapprox=171;RAW_GT_COUNT=0,1,0;RAW_MQandDP=174425,50;ReadPosRankSum=-1.081;VarDP=20 GT:AD:DP:GQ:PL:SB 0/1:12,8,0:20:99:171,0,252,207,277,484:9,3,2,6 +chrX 2523228 . T . . END=2523249 GT:DP:GQ:MIN_DP:PL 0/0:53:57:53:0,57,855 +chrX 2523250 . T . . END=2523250 GT:DP:GQ:MIN_DP:PL 0/0:40:1:40:0,1,1072 +chrX 2523251 . G . . END=2523420 GT:DP:GQ:MIN_DP:PL 0/0:34:24:28:0,24,885 +chrX 2523421 . T C, 402.64 . AS_QUALapprox=|410|0;AS_VarDP=30|17|0;BaseQRankSum=-1.220;DP=51;MQRankSum=0.000;QUALapprox=410;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183136,51;ReadPosRankSum=1.274;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:30,17,0:47:99:410,0,872,500,923,1422:10,20,10,7 +chrX 2523422 . G . . END=2524172 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,106,1439 +chrX 2524173 . G A, 607.64 . AS_QUALapprox=|615|0;AS_VarDP=25|23|0;BaseQRankSum=0.572;DP=49;MQRankSum=0.000;QUALapprox=615;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=0.382;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:25,23,0:48:99:615,0,665,690,734,1424:8,17,7,16 +chrX 2524174 . C . . END=2524314 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,112,1515 +chrX 2524315 . A G, 2020.06 . AS_QUALapprox=|2034|0;AS_VarDP=0|62|0;DP=65;QUALapprox=2034;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:0,62,0:62:99:2034,186,0,2034,186,2034:0,0,38,24 +chrX 2524316 . T . . END=2524429 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,105,1766 +chrX 2524430 . A G, 613.64 . AS_QUALapprox=|621|0;AS_VarDP=32|24|0;BaseQRankSum=0.822;DP=57;MQRankSum=0.000;QUALapprox=621;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-0.340;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:32,24,0:56:99:621,0,874,717,946,1663:19,13,13,11 +chrX 2524431 . A . . END=2524625 GT:DP:GQ:MIN_DP:PL 0/0:73:99:73:0,120,1800 +chrX 2524626 . C T, 975.64 . AS_QUALapprox=|983|0;AS_VarDP=44|38|0;BaseQRankSum=0.178;DP=84;MQRankSum=0.000;QUALapprox=983;RAW_GT_COUNT=0,1,0;RAW_MQandDP=302400,84;ReadPosRankSum=0.726;VarDP=82 GT:AD:DP:GQ:PL:SB 0/1:44,38,0:82:99:983,0,1203,1116,1316,2432:29,15,19,19 +chrX 2524627 . T . . END=2524960 GT:DP:GQ:MIN_DP:PL 0/0:73:99:73:0,120,1800 +chrX 2524961 . G A, 1112.64 . AS_QUALapprox=|1120|0;AS_VarDP=30|40|0;BaseQRankSum=-0.186;DP=72;MQRankSum=0.000;QUALapprox=1120;RAW_GT_COUNT=0,1,0;RAW_MQandDP=259200,72;ReadPosRankSum=-0.789;VarDP=70 GT:AD:DP:GQ:PL:SB 0/1:30,40,0:70:99:1120,0,791,1210,911,2122:9,21,18,22 +chrX 2524962 . C . . END=2525848 GT:DP:GQ:MIN_DP:PL 0/0:64:66:64:0,66,926 +chrX 2525849 . C CCCTT, 607.60 . AS_QUALapprox=|615|0;AS_VarDP=20|17|0;BaseQRankSum=0.432;DP=43;MQRankSum=0.000;QUALapprox=615;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154800,43;ReadPosRankSum=-0.579;VarDP=37 GT:AD:DP:GQ:PL:SB 0/1:20,17,0:37:99:615,0,748,675,799,1474:11,9,8,9 +chrX 2525850 . C . . END=2526534 GT:DP:GQ:MIN_DP:PL 0/0:57:95:57:0,95,1110 +chrX 2526535 . C T, 400.64 . AS_QUALapprox=|408|0;AS_VarDP=20|16|0;BaseQRankSum=0.734;DP=38;MQRankSum=0.000;QUALapprox=408;RAW_GT_COUNT=0,1,0;RAW_MQandDP=136800,38;ReadPosRankSum=1.513;VarDP=36 GT:AD:DP:GQ:PL:SB 0/1:20,16,0:36:99:408,0,502,468,550,1018:9,11,9,7 +chrX 2526536 . G . . END=2530274 GT:DP:GQ:MIN_DP:PL 0/0:61:68:61:0,68,1211 +chrX 2530275 . T . . END=2530275 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,1241 +chrX 2530276 . T . . END=2530427 GT:DP:GQ:MIN_DP:PL 0/0:45:46:45:0,46,1071 +chrX 2530428 . C . . END=2530428 GT:DP:GQ:MIN_DP:PL 0/0:36:9:36:0,9,902 +chrX 2530429 . A . . END=2530720 GT:DP:GQ:MIN_DP:PL 0/0:50:64:50:0,64,881 +chrX 2530721 . C . . END=2530721 GT:DP:GQ:MIN_DP:PL 0/0:32:12:32:0,12,823 +chrX 2530722 . A . . END=2531305 GT:DP:GQ:MIN_DP:PL 0/0:61:64:61:0,64,1413 +chrX 2531306 . A G, 1650.06 . AS_QUALapprox=|1664|0;AS_VarDP=0|51|0;DP=53;QUALapprox=1664;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1664,153,0,1664,153,1664:0,0,15,36 +chrX 2531307 . G . . END=2531869 GT:DP:GQ:MIN_DP:PL 0/0:58:82:58:0,82,1351 +chrX 2531870 . C T, 788.64 . AS_QUALapprox=|796|0;AS_VarDP=44|31|0;BaseQRankSum=1.202;DP=76;MQRankSum=0.000;QUALapprox=796;RAW_GT_COUNT=0,1,0;RAW_MQandDP=273600,76;ReadPosRankSum=-1.173;VarDP=75 GT:AD:DP:GQ:PL:SB 0/1:44,31,0:75:99:796,0,1194,928,1287,2215:22,22,15,16 +chrX 2531871 . A . . END=2531945 GT:DP:GQ:MIN_DP:PL 0/0:77:99:77:0,120,1800 +chrX 2531946 . G A, 1051.64 . AS_QUALapprox=|1059|0;AS_VarDP=41|41|0;BaseQRankSum=-0.579;DP=85;MQRankSum=0.000;QUALapprox=1059;RAW_GT_COUNT=0,1,0;RAW_MQandDP=306000,85;ReadPosRankSum=1.280;VarDP=82 GT:AD:DP:GQ:PL:SB 0/1:41,41,0:82:99:1059,0,1093,1182,1216,2398:15,26,20,21 +chrX 2531947 . A . . END=2532010 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 2532011 . G A, 1120.64 . AS_QUALapprox=|1128|0;AS_VarDP=31|41|0;BaseQRankSum=0.058;DP=75;MQRankSum=0.000;QUALapprox=1128;RAW_GT_COUNT=0,1,0;RAW_MQandDP=270000,75;ReadPosRankSum=0.313;VarDP=72 GT:AD:DP:GQ:PL:SB 0/1:31,41,0:72:99:1128,0,785,1221,908,2129:10,21,23,18 +chrX 2532012 . G . . END=2532087 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 2532088 . C A, 845.64 . AS_QUALapprox=|853|0;AS_VarDP=24|31|0;BaseQRankSum=0.650;DP=56;MQRankSum=-1.230;QUALapprox=853;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198953,56;ReadPosRankSum=0.850;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:24,31,0:55:99:853,0,579,924,672,1597:9,15,16,15 +chrX 2532089 . G . . END=2532171 GT:DP:GQ:MIN_DP:PL 0/0:50:60:50:0,60,900 +chrX 2532172 . G . . END=2532173 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,154 +chrX 2532174 . C . . END=2532174 GT:DP:GQ:MIN_DP:PL 0/0:42:75:42:0,75,1125 +chrX 2532175 . C . . END=2532178 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,233 +chrX 2532179 . A . . END=2532179 GT:DP:GQ:MIN_DP:PL 0/0:43:78:43:0,78,1170 +chrX 2532180 . T . . END=2532180 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,456 +chrX 2532181 . G . . END=2532181 GT:DP:GQ:MIN_DP:PL 0/0:39:78:39:0,78,1170 +chrX 2532182 . A . . END=2532186 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,415 +chrX 2532187 . A . . END=2532188 GT:DP:GQ:MIN_DP:PL 0/0:40:78:40:0,78,1170 +chrX 2532189 . T . . END=2532191 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,456 +chrX 2532192 . C . . END=2532192 GT:DP:GQ:MIN_DP:PL 0/0:40:84:40:0,84,1260 +chrX 2532193 . T . . END=2532197 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,516 +chrX 2532198 . T . . END=2532198 GT:DP:GQ:MIN_DP:PL 0/0:42:90:42:0,90,1350 +chrX 2532199 . T . . END=2532204 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,629 +chrX 2532205 . T . . END=2532205 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,99,1485 +chrX 2532206 . T . . END=2532221 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,784 +chrX 2532222 . T . . END=2532222 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,102,1530 +chrX 2532223 . A . . END=2532224 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,984 +chrX 2532225 . T . . END=2532225 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,102,1530 +chrX 2532226 . A . . END=2532226 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,943 +chrX 2532227 . T . . END=2532229 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,99,1346 +chrX 2532230 . A . . END=2532230 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,953 +chrX 2532231 . T . . END=2532232 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,105,1575 +chrX 2532233 . C . . END=2532233 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,1018 +chrX 2532234 . T . . END=2532234 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,114,1710 +chrX 2532235 . A . . END=2532239 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,1056 +chrX 2532240 . G . . END=2532530 GT:DP:GQ:MIN_DP:PL 0/0:30:21:29:0,21,853 +chrX 2532531 . C . . END=2532532 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,834 +chrX 2532533 . A . . END=2532534 GT:DP:GQ:MIN_DP:PL 0/0:30:72:30:0,72,1080 +chrX 2532535 . A . . END=2532546 GT:DP:GQ:MIN_DP:PL 0/0:29:0:29:0,0,636 +chrX 2532547 . A . . END=2532547 GT:DP:GQ:MIN_DP:PL 0/0:28:75:28:0,75,1125 +chrX 2532548 . T . . END=2532548 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,616 +chrX 2532549 . T . . END=2532549 GT:DP:GQ:MIN_DP:PL 0/0:31:81:31:0,81,1215 +chrX 2532550 . C . . END=2532550 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,632 +chrX 2532551 . A . . END=2532551 GT:DP:GQ:MIN_DP:PL 0/0:29:62:29:0,62,889 +chrX 2532552 . A . . END=2532552 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,477 +chrX 2532553 . C . . END=2532554 GT:DP:GQ:MIN_DP:PL 0/0:29:70:29:0,70,894 +chrX 2532555 . T . . END=2532555 GT:DP:GQ:MIN_DP:PL 0/0:29:0:29:0,0,511 +chrX 2532556 . A . . END=2532556 GT:DP:GQ:MIN_DP:PL 0/0:30:87:30:0,87,1305 +chrX 2532557 . T . . END=2532558 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,442 +chrX 2532559 . T . . END=2532559 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,982 +chrX 2532560 . T . . END=2532560 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,535 +chrX 2532561 . G . . END=2532562 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1003 +chrX 2532563 . T . . END=2532565 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,407 +chrX 2532566 . A . . END=2532566 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +chrX 2532567 . G . . END=2532567 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,452 +chrX 2532568 . T . . END=2532568 GT:DP:GQ:MIN_DP:PL 0/0:32:82:32:0,82,1033 +chrX 2532569 . T . . END=2532573 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,417 +chrX 2532574 . C . . END=2532574 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +chrX 2532575 . A . . END=2532590 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,313 +chrX 2532591 . A . . END=2532591 GT:DP:GQ:MIN_DP:PL 0/0:36:84:36:0,84,1152 +chrX 2532592 . T . . END=2532601 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,233 +chrX 2532602 . T . . END=2532602 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,108,1620 +chrX 2532603 . G . . END=2532608 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,0 +chrX 2532609 . A . . END=2532609 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 2532610 . C . . END=2532610 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,0 +chrX 2532611 . A . . END=2532611 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 2532612 . C . . END=2532612 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,0 +chrX 2532613 . A . . END=2532613 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 2532614 . C . . END=2532614 GT:DP:GQ:MIN_DP:PL 0/0:52:0:52:0,0,0 +chrX 2532615 . A . . END=2532615 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 2532616 . C . . END=2532622 GT:DP:GQ:MIN_DP:PL 0/0:54:0:54:0,0,0 +chrX 2532623 . G GCA, 959.03 . AS_QUALapprox=|973|0;AS_VarDP=0|25|0;DP=29;QUALapprox=973;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104400,29;VarDP=25 GT:AD:DP:GQ:PL:SB 1/1:0,25,0:25:75:973,75,0,974,75,974:0,0,9,16 +chrX 2532624 . C . . END=2532798 GT:DP:GQ:MIN_DP:PL 0/0:57:64:57:0,64,1279 +chrX 2532799 . G T, 1480.06 . AS_QUALapprox=|1494|0;AS_VarDP=0|45|0;DP=46;QUALapprox=1494;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;VarDP=45 GT:AD:DP:GQ:PL:SB 1/1:0,45,0:45:99:1494,135,0,1494,135,1494:0,0,28,17 +chrX 2532800 . G . . END=2532933 GT:DP:GQ:MIN_DP:PL 0/0:48:86:48:0,86,1363 +chrX 2532934 . T A, 689.64 . AS_QUALapprox=|697|0;AS_VarDP=27|27|0;BaseQRankSum=-0.827;DP=56;MQRankSum=-0.963;QUALapprox=697;RAW_GT_COUNT=0,1,0;RAW_MQandDP=199444,56;ReadPosRankSum=1.783;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:27,27,0:54:99:697,0,747,778,827,1605:17,10,9,18 +chrX 2532935 . T . . END=2533133 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,106,1703 +chrX 2533134 . G A, 1055.64 . AS_QUALapprox=|1063|0;AS_VarDP=20|27|0;BaseQRankSum=-1.074;DP=48;MQRankSum=0.000;QUALapprox=1063;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=0.689;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:20,27,0:47:99:0|1:2533134_G_A:1063,0,728,1123,809,1933:2533134:5,15,16,11 +chrX 2533135 . A . . END=2533139 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,117,1755 +chrX 2533140 . T C, 1055.64 . AS_QUALapprox=|1063|0;AS_VarDP=20|27|0;BaseQRankSum=-0.449;DP=48;MQRankSum=0.000;QUALapprox=1063;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=0.540;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:20,27,0:47:99:0|1:2533134_G_A:1063,0,728,1123,809,1932:2533134:5,15,16,11 +chrX 2533141 . G . . END=2533360 GT:DP:GQ:MIN_DP:PL 0/0:55:95:55:0,95,1439 +chrX 2533361 . C G, 389.64 . AS_QUALapprox=|397|0;AS_VarDP=27|16|0;BaseQRankSum=-0.314;DP=45;MQRankSum=0.000;QUALapprox=397;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=-0.050;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:27,16,0:43:99:397,0,769,478,817,1295:12,15,11,5 +chrX 2533362 . T . . END=2533403 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,114,1710 +chrX 2533404 . A AC, 1139.60 . AS_QUALapprox=|1147|0;AS_VarDP=20|29|0;BaseQRankSum=0.647;DP=53;MQRankSum=0.000;QUALapprox=1147;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=-1.216;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:20,29,0:49:99:0|1:2533404_A_AC:1147,0,719,1207,807,2014:2533404:13,7,14,15 +chrX 2533405 . C . . END=2533413 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 2533414 . C A, 1180.64 . AS_QUALapprox=|1188|0;AS_VarDP=21|31|0;BaseQRankSum=0.115;DP=53;MQRankSum=0.000;QUALapprox=1188;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=-0.718;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,31,0:52:99:0|1:2533404_A_AC:1188,0,748,1251,841,2092:2533404:13,8,14,17 +chrX 2533415 . G . . END=2533499 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 2533500 . C G, 744.64 . AS_QUALapprox=|752|0;AS_VarDP=29|28|0;BaseQRankSum=-0.404;DP=57;MQRankSum=0.000;QUALapprox=752;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=1.453;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:29,28,0:57:99:752,0,797,839,881,1720:14,15,15,13 +chrX 2533501 . C . . END=2534072 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,106,1714 +chrX 2534073 . T C, 686.64 . AS_QUALapprox=|694|0;AS_VarDP=37|26|0;BaseQRankSum=1.919;DP=64;MQRankSum=0.000;QUALapprox=694;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=-0.936;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:37,26,0:63:99:694,0,996,806,1075,1880:25,12,12,14 +chrX 2534074 . C . . END=2534154 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 2534155 . A G, 712.64 . AS_QUALapprox=|720|0;AS_VarDP=37|29|0;BaseQRankSum=0.425;DP=67;MQRankSum=0.000;QUALapprox=720;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=-0.743;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:37,29,0:66:99:720,0,1422,831,1509,2340:24,13,12,17 +chrX 2534156 . G . . END=2534158 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 2534159 . A G, 857.64 . AS_QUALapprox=|865|0;AS_VarDP=31|37|0;BaseQRankSum=-2.742;DP=70;MQRankSum=0.000;QUALapprox=865;RAW_GT_COUNT=0,1,0;RAW_MQandDP=252000,70;ReadPosRankSum=0.875;VarDP=68 GT:AD:DP:GQ:PL:SB 0/1:31,37,0:68:99:865,0,1161,959,1270,2228:13,18,24,13 +chrX 2534160 . G . . END=2534179 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 2534180 . A G, 788.64 . AS_QUALapprox=|796|0;AS_VarDP=42|30|0;BaseQRankSum=2.102;DP=77;MQRankSum=0.000;QUALapprox=796;RAW_GT_COUNT=0,1,0;RAW_MQandDP=277200,77;ReadPosRankSum=-0.337;VarDP=72 GT:AD:DP:GQ:PL:SB 0/1:42,30,0:72:99:796,0,1113,922,1203,2125:25,17,13,17 +chrX 2534181 . T . . END=2534249 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 2534250 . G A, 739.64 . AS_QUALapprox=|747|0;AS_VarDP=34|27|0;BaseQRankSum=2.192;DP=61;MQRankSum=0.000;QUALapprox=747;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-0.087;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:34,27,0:61:99:747,0,873,847,955,1802:16,18,10,17 +chrX 2534251 . T . . END=2534315 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 2534316 . T C, 576.64 . AS_QUALapprox=|584|0;AS_VarDP=27|23|0;BaseQRankSum=-1.455;DP=52;MQRankSum=0.000;QUALapprox=584;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=-0.779;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:27,23,0:50:99:584,0,769,666,837,1503:11,16,11,12 +chrX 2534317 . C . . END=2534390 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,109,1380 +chrX 2534391 . A C, 723.64 . AS_QUALapprox=|731|0;AS_VarDP=27|27|0;BaseQRankSum=-1.029;DP=57;MQRankSum=0.000;QUALapprox=731;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=1.134;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:27,27,0:54:99:731,0,765,813,846,1659:10,17,12,15 +chrX 2534392 . A . . END=2534868 GT:DP:GQ:MIN_DP:PL 0/0:56:94:56:0,94,1410 +chrX 2534869 . C T, 1743.06 . AS_QUALapprox=|1757|0;AS_VarDP=0|53|0;DP=56;QUALapprox=1757;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201249,56;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1757,159,0,1757,159,1757:0,0,27,26 +chrX 2534870 . G . . END=2534896 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 2534897 . A G, 752.64 . AS_QUALapprox=|760|0;AS_VarDP=31|30|0;BaseQRankSum=-0.197;DP=62;MQRankSum=-0.984;QUALapprox=760;RAW_GT_COUNT=0,1,0;RAW_MQandDP=222849,62;ReadPosRankSum=3.117;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:31,30,0:61:99:760,0,824,853,913,1766:17,14,16,14 +chrX 2534898 . G . . END=2535084 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,114,1410 +chrX 2535085 . C T, 925.64 . AS_QUALapprox=|933|0;AS_VarDP=23|35|0;BaseQRankSum=-0.980;DP=59;MQRankSum=0.000;QUALapprox=933;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=2.003;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:23,35,0:58:99:933,0,596,1002,700,1702:11,12,16,19 +chrX 2535086 . A . . END=2535185 GT:DP:GQ:MIN_DP:PL 0/0:59:96:59:0,96,1440 +chrX 2535186 . A . . END=2535188 GT:DP:GQ:MIN_DP:PL 0/0:55:0:55:0,0,609 +chrX 2535189 . A . . END=2535193 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 2535194 . TAA T, 835.60 . AS_QUALapprox=|843|0;AS_VarDP=30|23|0;BaseQRankSum=0.536;DP=57;MQRankSum=0.000;QUALapprox=843;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-0.613;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:30,23,0:53:99:0|1:2535194_TAA_T:843,0,1180,933,1249,2182:2535194:17,13,9,14 +chrX 2535197 . T . . END=2535203 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 2535204 . TG T, 862.60 . AS_QUALapprox=|870|0;AS_VarDP=31|24|0;BaseQRankSum=2.572;DP=61;MQRankSum=0.000;QUALapprox=870;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-0.226;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:31,24,0:55:99:0|1:2535194_TAA_T:870,0,1176,964,1248,2212:2535194:17,14,10,14 +chrX 2535206 . A . . END=2535303 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 2535304 . A C, 559.64 . AS_QUALapprox=|567|0;AS_VarDP=28|23|0;BaseQRankSum=-0.397;DP=54;MQRankSum=0.000;QUALapprox=567;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=-1.279;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:28,23,0:51:99:567,0,756,651,824,1475:19,9,12,11 +chrX 2535305 . A . . END=2535665 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 2535666 . T G, 771.64 . AS_QUALapprox=|779|0;AS_VarDP=25|29|0;BaseQRankSum=-2.084;DP=56;MQRankSum=0.000;QUALapprox=779;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=0.104;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:25,29,0:54:99:779,0,685,854,772,1626:13,12,14,15 +chrX 2535667 . T . . END=2535728 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,107,1702 +chrX 2535729 . A G, 658.64 . AS_QUALapprox=|666|0;AS_VarDP=27|26|0;BaseQRankSum=0.226;DP=57;MQRankSum=0.000;QUALapprox=666;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=1.032;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:27,26,0:53:99:666,0,687,746,764,1510:16,11,13,13 +chrX 2535730 . T . . END=2535835 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,119,1677 +chrX 2535836 . A G, 725.64 . AS_QUALapprox=|733|0;AS_VarDP=31|26|0;BaseQRankSum=2.779;DP=57;MQRankSum=0.000;QUALapprox=733;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-0.930;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:31,26,0:57:99:733,0,811,826,889,1715:13,18,13,13 +chrX 2535837 . T . . END=2536241 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 2536242 . A G, 972.64 . AS_QUALapprox=|980|0;AS_VarDP=30|35|0;BaseQRankSum=-0.643;DP=71;MQRankSum=0.000;QUALapprox=980;RAW_GT_COUNT=0,1,0;RAW_MQandDP=255600,71;ReadPosRankSum=0.184;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:30,35,0:65:99:980,0,827,1070,933,2002:11,19,22,13 +chrX 2536243 . C . . END=2536674 GT:DP:GQ:MIN_DP:PL 0/0:64:67:64:0,67,1183 +chrX 2536675 . T G, 354.64 . AS_QUALapprox=|362|0;AS_VarDP=34|17|0;BaseQRankSum=-1.720;DP=52;MQRankSum=0.000;QUALapprox=362;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=-2.329;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:34,17,0:51:99:362,0,979,464,1029,1493:14,20,9,8 +chrX 2536676 . G . . END=2536829 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 2536830 . T C, 1840.06 . AS_QUALapprox=|1854|0;AS_VarDP=0|59|0;DP=62;QUALapprox=1854;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1854,177,0,1854,177,1854:0,0,35,24 +chrX 2536831 . G . . END=2536855 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 2536856 . A G, 644.64 . AS_QUALapprox=|652|0;AS_VarDP=35|27|0;BaseQRankSum=-3.060;DP=64;MQRankSum=0.000;QUALapprox=652;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=-0.447;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:35,27,0:62:99:652,0,1010,757,1091,1848:19,16,16,11 +chrX 2536857 . C . . END=2536975 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 2536976 . T C, 720.64 . AS_QUALapprox=|728|0;AS_VarDP=32|28|0;BaseQRankSum=-0.490;DP=62;MQRankSum=0.000;QUALapprox=728;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=-0.726;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:32,28,0:60:99:728,0,863,824,947,1770:20,12,14,14 +chrX 2536977 . T . . END=2537353 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,108,1355 +chrX 2537354 . TA T, 610.03 . AS_QUALapprox=|624|0;AS_VarDP=0|27|0;DP=43;QUALapprox=624;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154800,43;VarDP=27 GT:AD:DP:GQ:PL:SB 1/1:0,27,0:27:81:624,81,0,624,81,624:0,0,14,13 +chrX 2537356 . A . . END=2537627 GT:DP:GQ:MIN_DP:PL 0/0:74:95:74:0,95,1571 +chrX 2537628 . C T, 641.64 . AS_QUALapprox=|649|0;AS_VarDP=46|27|0;BaseQRankSum=0.415;DP=74;MQRankSum=0.000;QUALapprox=649;RAW_GT_COUNT=0,1,0;RAW_MQandDP=266400,74;ReadPosRankSum=1.332;VarDP=73 GT:AD:DP:GQ:PL:SB 0/1:46,27,0:73:99:649,0,1237,787,1318,2106:17,29,12,15 +chrX 2537629 . A . . END=2537643 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 2537644 . A G, 510.64 . AS_QUALapprox=|518|0;AS_VarDP=43|24|0;BaseQRankSum=-0.048;DP=69;MQRankSum=0.000;QUALapprox=518;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=2.682;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:43,24,0:67:99:518,0,1195,648,1266,1913:16,27,11,13 +chrX 2537645 . T . . END=2538193 GT:DP:GQ:MIN_DP:PL 0/0:56:30:53:0,30,1323 +chrX 2538194 . T TTGTTTTGCACAAGG, 2460.03 . AS_QUALapprox=|2474|0;AS_VarDP=0|55|0;DP=58;QUALapprox=2474;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:2474,165,0,2474,166,2475:0,0,29,26 +chrX 2538195 . T . . END=2538298 GT:DP:GQ:MIN_DP:PL 0/0:48:77:48:0,77,1271 +chrX 2538299 . G C, 657.64 . AS_QUALapprox=|665|0;AS_VarDP=28|25|0;BaseQRankSum=-0.178;DP=54;MQRankSum=0.000;QUALapprox=665;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=-0.437;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:28,25,0:53:99:665,0,784,749,859,1608:16,12,11,14 +chrX 2538300 . A . . END=2538407 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 2538408 . C T, 2159.06 . AS_QUALapprox=|2173|0;AS_VarDP=0|66|0;DP=68;QUALapprox=2173;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;VarDP=66 GT:AD:DP:GQ:PL:SB 1/1:0,66,0:66:99:2173,198,0,2173,198,2173:0,0,41,25 +chrX 2538409 . A . . END=2539311 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,118,1800 +chrX 2539312 . G C, 500.64 . AS_QUALapprox=|508|0;AS_VarDP=32|22|0;BaseQRankSum=-0.541;DP=56;MQRankSum=0.000;QUALapprox=508;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=0.784;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:32,22,0:54:99:508,0,808,603,873,1477:18,14,10,12 +chrX 2539313 . G . . END=2539333 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,116,1548 +chrX 2539334 . C G, 1557.06 . AS_QUALapprox=|1571|0;AS_VarDP=0|49|0;DP=52;QUALapprox=1571;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1571,147,0,1571,147,1571:0,0,25,24 +chrX 2539335 . C . . END=2539351 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,120,1800 +chrX 2539352 . A G, 714.64 . AS_QUALapprox=|722|0;AS_VarDP=22|27|0;BaseQRankSum=0.638;DP=51;MQRankSum=0.000;QUALapprox=722;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=0.241;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:22,27,0:49:99:722,0,518,787,599,1386:9,13,15,12 +chrX 2539353 . A . . END=2539750 GT:DP:GQ:MIN_DP:PL 0/0:49:78:49:0,78,1096 +chrX 2539751 . G A, 496.64 . AS_QUALapprox=|504|0;AS_VarDP=34|20|0;BaseQRankSum=0.597;DP=56;MQRankSum=0.000;QUALapprox=504;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=1.200;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:34,20,0:54:99:504,0,920,605,980,1585:25,9,11,9 +chrX 2539752 . C . . END=2540278 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,104,1493 +chrX 2540279 . C A, 806.64 . AS_QUALapprox=|814|0;AS_VarDP=16|30|0;BaseQRankSum=-1.824;DP=48;MQRankSum=1.415;QUALapprox=814;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172449,48;ReadPosRankSum=-1.188;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:16,30,0:46:99:814,0,408,862,498,1361:10,6,10,20 +chrX 2540280 . C . . END=2540438 GT:DP:GQ:MIN_DP:PL 0/0:42:62:42:0,62,868 +chrX 2540439 . G . . END=2540439 GT:DP:GQ:MIN_DP:PL 0/0:25:0:25:0,0,312 +chrX 2540440 . G . . END=2540442 GT:DP:GQ:MIN_DP:PL 0/0:26:63:26:0,63,945 +chrX 2540443 . A . . END=2540443 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,377 +chrX 2540444 . T . . END=2540452 GT:DP:GQ:MIN_DP:PL 0/0:28:34:27:0,34,709 +chrX 2540453 . G . . END=2540453 GT:DP:GQ:MIN_DP:PL 0/0:25:0:25:0,0,391 +chrX 2540454 . T . . END=2540454 GT:DP:GQ:MIN_DP:PL 0/0:27:51:27:0,51,765 +chrX 2540455 . G . . END=2540455 GT:DP:GQ:MIN_DP:PL 0/0:26:4:26:0,4,666 +chrX 2540456 . C . . END=2540456 GT:DP:GQ:MIN_DP:PL 0/0:28:54:28:0,54,810 +chrX 2540457 . A . . END=2540465 GT:DP:GQ:MIN_DP:PL 0/0:26:0:26:0,0,347 +chrX 2540466 . A ATT, 516.03 . AS_QUALapprox=|530|0;AS_VarDP=0|16|0;DP=19;QUALapprox=530;RAW_GT_COUNT=0,0,1;RAW_MQandDP=68400,19;VarDP=16 GT:AD:DP:GQ:PL:SB 1/1:0,16,0:16:48:530,48,0,530,48,530:0,0,7,9 +chrX 2540467 . T . . END=2540470 GT:DP:GQ:MIN_DP:PL 0/0:25:0:25:0,0,411 +chrX 2540471 . T . . END=2540473 GT:DP:GQ:MIN_DP:PL 0/0:24:47:24:0,47,720 +chrX 2540474 . T . . END=2540474 GT:DP:GQ:MIN_DP:PL 0/0:24:0:24:0,0,576 +chrX 2540475 . T . . END=2540477 GT:DP:GQ:MIN_DP:PL 0/0:25:50:25:0,50,749 +chrX 2540478 . T . . END=2540479 GT:DP:GQ:MIN_DP:PL 0/0:24:0:24:0,0,616 +chrX 2540480 . T . . END=2540481 GT:DP:GQ:MIN_DP:PL 0/0:23:47:23:0,47,755 +chrX 2540482 . C . . END=2540484 GT:DP:GQ:MIN_DP:PL 0/0:24:0:24:0,0,367 +chrX 2540485 . G . . END=2540485 GT:DP:GQ:MIN_DP:PL 0/0:22:31:22:0,31,635 +chrX 2540486 . A . . END=2540486 GT:DP:GQ:MIN_DP:PL 0/0:21:0:21:0,0,561 +chrX 2540487 . G . . END=2540491 GT:DP:GQ:MIN_DP:PL 0/0:22:60:22:0,60,710 +chrX 2540492 . A . . END=2540493 GT:DP:GQ:MIN_DP:PL 0/0:23:0:23:0,0,537 +chrX 2540494 . T . . END=2540523 GT:DP:GQ:MIN_DP:PL 0/0:22:41:22:0,41,581 +chrX 2540524 . A . . END=2540524 GT:DP:GQ:MIN_DP:PL 0/0:23:11:23:0,11,563 +chrX 2540525 . A . . END=2540639 GT:DP:GQ:MIN_DP:PL 0/0:24:23:19:0,23,571 +chrX 2540640 . T . . END=2540640 GT:DP:GQ:MIN_DP:PL 0/0:19:18:19:0,18,532 +chrX 2540641 . T . . END=2540645 GT:DP:GQ:MIN_DP:PL 0/0:19:22:19:0,22,571 +chrX 2540646 . T . . END=2540647 GT:DP:GQ:MIN_DP:PL 0/0:18:2:18:0,2,452 +chrX 2540648 . G . . END=2540651 GT:DP:GQ:MIN_DP:PL 0/0:18:37:17:0,37,511 +chrX 2540652 . A . . END=2540654 GT:DP:GQ:MIN_DP:PL 0/0:16:13:16:0,13,487 +chrX 2540655 . G . . END=2540656 GT:DP:GQ:MIN_DP:PL 0/0:16:20:15:0,20,462 +chrX 2540657 . T . . END=2540657 GT:DP:GQ:MIN_DP:PL 0/0:16:13:16:0,13,487 +chrX 2540658 . T . . END=2540658 GT:DP:GQ:MIN_DP:PL 0/0:16:42:16:0,42,630 +chrX 2540659 . T . . END=2540659 GT:DP:GQ:MIN_DP:PL 0/0:15:10:15:0,10,442 +chrX 2540660 . C . . END=2540664 GT:DP:GQ:MIN_DP:PL 0/0:16:34:15:0,34,507 +chrX 2540665 . T . . END=2540665 GT:DP:GQ:MIN_DP:PL 0/0:16:13:16:0,13,487 +chrX 2540666 . G . . END=2540705 GT:DP:GQ:MIN_DP:PL 0/0:17:34:16:0,34,497 +chrX 2540706 . C . . END=2540706 GT:DP:GQ:MIN_DP:PL 0/0:17:16:17:0,16,501 +chrX 2540707 . G . . END=2540748 GT:DP:GQ:MIN_DP:PL 0/0:20:37:17:0,37,532 +chrX 2540749 . C T, 697.06 . AS_QUALapprox=|711|0;AS_VarDP=0|21|0;DP=23;QUALapprox=711;RAW_GT_COUNT=0,0,1;RAW_MQandDP=79641,23;VarDP=21 GT:AD:DP:GQ:PL:SB 1/1:0,21,0:21:63:711,63,0,711,63,711:0,0,11,10 +chrX 2540750 . C . . END=2540850 GT:DP:GQ:MIN_DP:PL 0/0:21:31:17:0,31,495 +chrX 2540851 . CTTTTTTTT C, 549.03 . AS_QUALapprox=|563|0;AS_VarDP=0|13|0;DP=18;QUALapprox=563;RAW_GT_COUNT=0,0,1;RAW_MQandDP=64800,18;VarDP=13 GT:AD:DP:GQ:PL:SB 1/1:0,13,0:13:40:563,40,0,563,40,563:0,0,9,4 +chrX 2540860 . T . . END=2540860 GT:DP:GQ:MIN_DP:PL 0/0:15:33:15:0,33,495 +chrX 2540861 . T . . END=2540863 GT:DP:GQ:MIN_DP:PL 0/0:14:4:14:0,4,352 +chrX 2540864 . T . . END=2540922 GT:DP:GQ:MIN_DP:PL 0/0:15:20:13:0,20,338 +chrX 2540923 . A . . END=2540923 GT:DP:GQ:MIN_DP:PL 0/0:21:0:21:0,0,532 +chrX 2540924 . C . . END=2541057 GT:DP:GQ:MIN_DP:PL 0/0:21:28:18:0,28,511 +chrX 2541058 . G . . END=2541058 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,337 +chrX 2541059 . T . . END=2541085 GT:DP:GQ:MIN_DP:PL 0/0:15:20:13:0,20,393 +chrX 2541086 . G . . END=2541086 GT:DP:GQ:MIN_DP:PL 0/0:14:17:14:0,17,427 +chrX 2541087 . G . . END=2541207 GT:DP:GQ:MIN_DP:PL 0/0:16:22:13:0,22,422 +chrX 2541208 . A . . END=2541208 GT:DP:GQ:MIN_DP:PL 0/0:17:16:17:0,16,430 +chrX 2541209 . T . . END=2541282 GT:DP:GQ:MIN_DP:PL 0/0:18:36:17:0,36,475 +chrX 2541283 . C T, 735.06 . AS_QUALapprox=|749|0;AS_VarDP=0|22|0;DP=25;QUALapprox=749;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=22 GT:AD:DP:GQ:PL:SB 1/1:0,22,0:22:66:749,66,0,749,66,749:0,0,8,14 +chrX 2541284 . T . . END=2541402 GT:DP:GQ:MIN_DP:PL 0/0:28:28:22:0,28,590 +chrX 2541403 . A . . END=2541403 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,903 +chrX 2541404 . A . . END=2541406 GT:DP:GQ:MIN_DP:PL 0/0:36:63:36:0,63,993 +chrX 2541407 . G . . END=2541407 GT:DP:GQ:MIN_DP:PL 0/0:36:4:36:0,4,912 +chrX 2541408 . C . . END=2541412 GT:DP:GQ:MIN_DP:PL 0/0:36:24:35:0,24,953 +chrX 2541413 . G . . END=2541414 GT:DP:GQ:MIN_DP:PL 0/0:35:1:35:0,1,918 +chrX 2541415 . T . . END=2541419 GT:DP:GQ:MIN_DP:PL 0/0:36:77:36:0,77,1072 +chrX 2541420 . T . . END=2541420 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,903 +chrX 2541421 . G . . END=2541425 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1121 +chrX 2541426 . T . . END=2541426 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,968 +chrX 2541427 . C . . END=2541434 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,99,1037 +chrX 2541435 . A . . END=2541435 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,824 +chrX 2541436 . G . . END=2541488 GT:DP:GQ:MIN_DP:PL 0/0:48:71:48:0,71,1394 +chrX 2541489 . GCTTT G, 415.60 . AS_QUALapprox=|423|0;AS_VarDP=27|12|0;BaseQRankSum=-0.754;DP=46;MQRankSum=-1.444;QUALapprox=423;RAW_GT_COUNT=0,1,0;RAW_MQandDP=164601,46;ReadPosRankSum=1.949;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:27,12,0:39:99:423,0,1087,504,1123,1628:21,6,5,7 +chrX 2541494 . C . . END=2541545 GT:DP:GQ:MIN_DP:PL 0/0:45:59:45:0,59,977 +chrX 2541546 . T . . END=2541546 GT:DP:GQ:MIN_DP:PL 0/0:35:17:35:0,17,949 +chrX 2541547 . C . . END=2541584 GT:DP:GQ:MIN_DP:PL 0/0:36:34:32:0,34,877 +chrX 2541585 . C . . END=2541585 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,754 +chrX 2541586 . A . . END=2541586 GT:DP:GQ:MIN_DP:PL 0/0:30:72:30:0,72,1080 +chrX 2541587 . G . . END=2541593 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,362 +chrX 2541594 . G GGAAAAAAAAAA, 560.60 . AS_QUALapprox=|568|0;AS_VarDP=9|18|0;BaseQRankSum=0.338;DP=35;MQRankSum=-1.228;QUALapprox=568;RAW_GT_COUNT=0,1,0;RAW_MQandDP=118000,35;ReadPosRankSum=-2.571;VarDP=27 GT:AD:DP:GQ:PL:SB 0/1:9,18,0:27:99:568,0,190,596,244,840:7,2,7,11 +chrX 2541595 . A . . END=2541595 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,301 +chrX 2541596 . A . . END=2541820 GT:DP:GQ:MIN_DP:PL 0/0:60:57:60:0,57,945 +chrX 2541821 . A G, 1509.06 . AS_QUALapprox=|1523|0;AS_VarDP=0|45|0;DP=47;QUALapprox=1523;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;VarDP=45 GT:AD:DP:GQ:PL:SB 1/1:0,45,0:45:99:1523,135,0,1523,135,1523:0,0,24,21 +chrX 2541822 . G . . END=2541991 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,109,1539 +chrX 2541992 . C T, 834.64 . AS_QUALapprox=|842|0;AS_VarDP=23|32|0;BaseQRankSum=0.446;DP=59;MQRankSum=0.000;QUALapprox=842;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-0.077;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:23,32,0:55:99:842,0,550,911,645,1557:11,12,15,17 +chrX 2541993 . G . . END=2542547 GT:DP:GQ:MIN_DP:PL 0/0:44:29:41:0,29,1137 +chrX 2542548 . A G, 1627.06 . AS_QUALapprox=|1641|0;AS_VarDP=0|53|0;DP=54;QUALapprox=1641;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1641,158,0,1641,158,1641:0,0,27,26 +chrX 2542549 . T . . END=2543001 GT:DP:GQ:MIN_DP:PL 0/0:61:75:61:0,75,1574 +chrX 2543002 . AAAATAAATAAATAAATAAAT A,AAAATAAATAAAT, 1754.02 . AS_QUALapprox=|929|905|0;AS_VarDP=0|23|20|0;DP=71;QUALapprox=1771;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;VarDP=43 GT:AD:DP:GQ:PL:SB 1/2:0,23,20,0:43:99:1771,842,1052,929,0,866,1791,993,948,1921:0,0,18,25 +chrX 2543023 . A . . END=2543028 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 2543029 . A . . END=2543029 GT:DP:GQ:MIN_DP:PL 0/0:56:0:56:0,0,1470 +chrX 2543030 . T . . END=2543323 GT:DP:GQ:MIN_DP:PL 0/0:56:36:54:0,36,1573 +chrX 2543324 . T C, 705.64 . AS_QUALapprox=|713|0;AS_VarDP=32|28|0;BaseQRankSum=-1.529;DP=63;MQRankSum=0.000;QUALapprox=713;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=1.972;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:32,28,0:60:99:713,0,892,809,976,1785:17,15,13,15 +chrX 2543325 . G . . END=2543753 GT:DP:GQ:MIN_DP:PL 0/0:61:61:61:0,61,1181 +chrX 2543754 . C . . END=2543754 GT:DP:GQ:MIN_DP:PL 0/0:39:4:39:0,4,978 +chrX 2543755 . A . . END=2543762 GT:DP:GQ:MIN_DP:PL 0/0:44:51:44:0,51,1077 +chrX 2543763 . C . . END=2543765 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,1011 +chrX 2543766 . CA C,CAA, 577.02 . AS_QUALapprox=|104|429|0;AS_VarDP=0|9|20|0;DP=46;QUALapprox=594;RAW_GT_COUNT=0,0,1;RAW_MQandDP=163600,46;VarDP=29 GT:AD:DP:GQ:PL:SB 1/2:0,9,20,0:29:99:594,490,590,165,0,171,640,562,205,723:0,0,19,10 +chrX 2543768 . A . . END=2543787 GT:DP:GQ:MIN_DP:PL 0/0:44:90:44:0,90,1350 +chrX 2543788 . G A, 18.64 . AS_QUALapprox=|26|0;AS_VarDP=44|5|0;BaseQRankSum=1.546;DP=55;MQRankSum=-2.899;QUALapprox=26;RAW_GT_COUNT=0,1,0;RAW_MQandDP=196000,55;ReadPosRankSum=-0.496;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:44,5,0:49:26:26,0,1275,157,1290,1446:24,20,5,0 +chrX 2543789 . A . . END=2544105 GT:DP:GQ:MIN_DP:PL 0/0:58:74:58:0,74,1568 +chrX 2544106 . C T, 1161.64 . AS_QUALapprox=|1169|0;AS_VarDP=27|31|0;BaseQRankSum=0.419;DP=60;MQRankSum=0.000;QUALapprox=1169;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=-1.603;VarDP=58 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,31,0:58:99:0|1:2544106_C_T:1169,0,999,1250,1092,2342:2544106:10,17,15,16 +chrX 2544107 . G . . END=2544122 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 2544123 . T C, 1113.64 . AS_QUALapprox=|1121|0;AS_VarDP=29|30|0;BaseQRankSum=-1.400;DP=61;MQRankSum=0.000;QUALapprox=1121;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-0.218;VarDP=59 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,30,0:59:99:0|1:2544106_C_T:1121,0,1066,1208,1156,2364:2544106:10,19,13,17 +chrX 2544124 . A . . END=2544709 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,119,1697 +chrX 2544710 . T C, 769.64 . AS_QUALapprox=|777|0;AS_VarDP=32|30|0;BaseQRankSum=-0.650;DP=65;MQRankSum=0.000;QUALapprox=777;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=-2.107;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:32,30,0:62:99:777,0,851,873,941,1814:15,17,18,12 +chrX 2544711 . T . . END=2545327 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,116,1702 +chrX 2545328 . G A, 2430.06 . AS_QUALapprox=|2444|0;AS_VarDP=0|75|0;DP=77;QUALapprox=2444;RAW_GT_COUNT=0,0,1;RAW_MQandDP=277200,77;VarDP=75 GT:AD:DP:GQ:PL:SB 1/1:0,75,0:75:99:2444,225,0,2444,225,2444:0,0,50,25 +chrX 2545329 . T . . END=2546744 GT:DP:GQ:MIN_DP:PL 0/0:60:37:52:0,37,1348 +chrX 2546745 . T C, 2527.06 . AS_QUALapprox=|2541|0;AS_VarDP=0|78|0;DP=83;QUALapprox=2541;RAW_GT_COUNT=0,0,1;RAW_MQandDP=298800,83;VarDP=78 GT:AD:DP:GQ:PL:SB 1/1:0,78,0:78:99:2541,234,0,2541,234,2541:0,0,42,36 +chrX 2546746 . G . . END=2547394 GT:DP:GQ:MIN_DP:PL 0/0:67:69:67:0,69,1255 +chrX 2547395 . T C, 1272.06 . AS_QUALapprox=|1286|0;AS_VarDP=0|39|0;DP=41;QUALapprox=1286;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147481,41;VarDP=39 GT:AD:DP:GQ:PL:SB 1/1:0,39,0:39:99:1286,117,0,1286,117,1286:0,0,24,15 +chrX 2547396 . G . . END=2547687 GT:DP:GQ:MIN_DP:PL 0/0:49:85:49:0,85,1126 +chrX 2547688 . G A, 571.64 . AS_QUALapprox=|579|0;AS_VarDP=23|21|0;BaseQRankSum=2.073;DP=49;MQRankSum=0.000;QUALapprox=579;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=-0.682;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:23,21,0:44:99:579,0,543,647,606,1253:12,11,13,8 +chrX 2547689 . C . . END=2547731 GT:DP:GQ:MIN_DP:PL 0/0:40:84:40:0,84,1260 +chrX 2547732 . TTGTATGTG T, 833.03 . AS_QUALapprox=|847|0;AS_VarDP=0|19|0;DP=35;QUALapprox=847;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=19 GT:AD:DP:GQ:PL:SB 1/1:0,19,0:19:58:847,58,0,847,58,847:0,0,17,2 +chrX 2547741 . T . . END=2547762 GT:DP:GQ:MIN_DP:PL 0/0:27:49:27:0,49,730 +chrX 2547763 . T . . END=2547763 GT:DP:GQ:MIN_DP:PL 0/0:25:0:25:0,0,671 +chrX 2547764 . G . . END=2547769 GT:DP:GQ:MIN_DP:PL 0/0:35:93:35:0,93,1001 +chrX 2547770 . T . . END=2547770 GT:DP:GQ:MIN_DP:PL 0/0:26:0:26:0,0,575 +chrX 2547771 . G . . END=2547774 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1042 +chrX 2547775 . T . . END=2547775 GT:DP:GQ:MIN_DP:PL 0/0:29:0:29:0,0,670 +chrX 2547776 . G . . END=2548128 GT:DP:GQ:MIN_DP:PL 0/0:48:43:48:0,43,669 +chrX 2548129 . G . . END=2548129 GT:DP:GQ:MIN_DP:PL 0/0:26:0:26:0,0,655 +chrX 2548130 . C . . END=2548132 GT:DP:GQ:MIN_DP:PL 0/0:31:22:27:0,22,780 +chrX 2548133 . TAA T, 228.60 . AS_QUALapprox=|236|0;AS_VarDP=20|11|0;BaseQRankSum=0.772;DP=45;MQRankSum=0.809;QUALapprox=236;RAW_GT_COUNT=0,1,0;RAW_MQandDP=160000,45;ReadPosRankSum=1.646;VarDP=31 GT:AD:DP:GQ:PL:SB 0/1:20,11,0:31:99:236,0,449,296,482,778:7,13,5,6 +chrX 2548136 . A . . END=2548229 GT:DP:GQ:MIN_DP:PL 0/0:49:96:49:0,96,1440 +chrX 2548230 . C CTT, 396.60 . AS_QUALapprox=|404|0;AS_VarDP=18|19|0;BaseQRankSum=-2.773;DP=53;MQRankSum=-1.357;QUALapprox=404;RAW_GT_COUNT=0,1,0;RAW_MQandDP=186820,53;ReadPosRankSum=-1.383;VarDP=37 GT:AD:DP:GQ:PL:SB 0/1:18,19,0:37:99:404,0,476,458,532,990:8,10,9,10 +chrX 2548231 . T . . END=2548246 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,111,1665 +chrX 2548247 . G . . END=2548248 GT:DP:GQ:MIN_DP:PL 0/0:54:0:54:0,0,998 +chrX 2548249 . G . . END=2548348 GT:DP:GQ:MIN_DP:PL 0/0:44:38:43:0,38,1191 +chrX 2548349 . C A, 518.64 . AS_QUALapprox=|526|0;AS_VarDP=25|21|0;BaseQRankSum=-1.963;DP=47;MQRankSum=-1.047;QUALapprox=526;RAW_GT_COUNT=0,1,0;RAW_MQandDP=168516,47;ReadPosRankSum=0.254;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:25,21,0:46:99:526,0,721,601,784,1385:15,10,11,10 +chrX 2548350 . T . . END=2549532 GT:DP:GQ:MIN_DP:PL 0/0:53:93:53:0,93,1269 +chrX 2549533 . C G, 676.64 . AS_QUALapprox=|684|0;AS_VarDP=27|26|0;BaseQRankSum=-1.564;DP=55;MQRankSum=0.000;QUALapprox=684;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=1.015;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:27,26,0:53:99:684,0,759,765,837,1602:12,15,15,11 +chrX 2549534 . T . . END=2549571 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,111,1433 +chrX 2549572 . T TG, 718.60 . AS_QUALapprox=|726|0;AS_VarDP=24|24|0;BaseQRankSum=0.338;DP=52;MQRankSum=0.000;QUALapprox=726;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=-1.300;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:24,24,0:48:99:726,0,740,798,812,1611:16,8,12,12 +chrX 2549573 . G . . END=2550032 GT:DP:GQ:MIN_DP:PL 0/0:57:86:57:0,86,1355 +chrX 2550033 . C T, 1026.64 . AS_QUALapprox=|1034|0;AS_VarDP=27|37|0;BaseQRankSum=1.336;DP=66;MQRankSum=0.000;QUALapprox=1034;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=0.313;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:27,37,0:64:99:1034,0,651,1115,762,1877:13,14,21,16 +chrX 2550034 . G . . END=2550390 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,113,1564 +chrX 2550391 . C T, 882.64 . AS_QUALapprox=|890|0;AS_VarDP=39|24|0;BaseQRankSum=1.559;DP=63;MQRankSum=-6.258;QUALapprox=890;RAW_GT_COUNT=0,1,0;RAW_MQandDP=191206,63;ReadPosRankSum=-0.289;VarDP=63 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:39,24,0:63:99:0|1:2550391_C_T:890,0,1554,1008,1627,2634:2550391:21,18,12,12 +chrX 2550392 . C G, 882.64 . AS_QUALapprox=|890|0;AS_VarDP=39|24|0;BaseQRankSum=1.286;DP=63;MQRankSum=-6.258;QUALapprox=890;RAW_GT_COUNT=0,1,0;RAW_MQandDP=191206,63;ReadPosRankSum=-0.085;VarDP=63 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:39,24,0:63:99:0|1:2550391_C_T:890,0,1554,1008,1627,2634:2550391:21,18,12,12 +chrX 2550393 . A . . END=2550498 GT:DP:GQ:MIN_DP:PL 0/0:73:99:73:0,120,1800 +chrX 2550499 . T C, 2161.06 . AS_QUALapprox=|2175|0;AS_VarDP=0|68|0;DP=71;QUALapprox=2175;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230651,71;VarDP=68 GT:AD:DP:GQ:PL:SB 1/1:0,68,0:68:99:2175,204,0,2175,204,2175:0,0,32,36 +chrX 2550500 . G . . END=2551305 GT:DP:GQ:MIN_DP:PL 0/0:60:92:60:0,92,1277 +chrX 2551306 . ATT A, 296.60 . AS_QUALapprox=|304|0;AS_VarDP=18|12|0;BaseQRankSum=-0.430;DP=48;MQRankSum=0.000;QUALapprox=304;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=-1.716;VarDP=30 GT:AD:DP:GQ:PL:SB 0/1:18,12,0:30:99:304,0,440,358,476,835:9,9,3,9 +chrX 2551309 . T . . END=2551342 GT:DP:GQ:MIN_DP:PL 0/0:36:61:36:0,61,983 +chrX 2551343 . G T, 504.64 . AS_QUALapprox=|512|0;AS_VarDP=17|18|0;BaseQRankSum=1.600;DP=35;MQRankSum=-0.915;QUALapprox=512;RAW_GT_COUNT=0,1,0;RAW_MQandDP=124516,35;ReadPosRankSum=0.314;VarDP=35 GT:AD:DP:GQ:PL:SB 0/1:17,18,0:35:99:512,0,401,561,455,1017:6,11,8,10 +chrX 2551344 . T . . END=2552212 GT:DP:GQ:MIN_DP:PL 0/0:65:93:65:0,93,1187 +chrX 2552213 . T C, 849.64 . AS_QUALapprox=|857|0;AS_VarDP=22|36|0;BaseQRankSum=-3.206;DP=59;MQRankSum=0.000;QUALapprox=857;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-2.894;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:22,36,0:58:99:857,0,582,923,689,1612:12,10,15,21 +chrX 2552214 . G . . END=2552351 GT:DP:GQ:MIN_DP:PL 0/0:46:67:46:0,67,1250 +chrX 2552352 . T G, 799.64 . AS_QUALapprox=|807|0;AS_VarDP=14|28|0;BaseQRankSum=-1.443;DP=43;MQRankSum=0.000;QUALapprox=807;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154800,43;ReadPosRankSum=-1.469;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:14,28,0:42:99:807,0,360,849,445,1294:9,5,17,11 +chrX 2552353 . C . . END=2552457 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 2552458 . A G, 838.64 . AS_QUALapprox=|846|0;AS_VarDP=40|32|0;BaseQRankSum=0.485;DP=74;MQRankSum=0.000;QUALapprox=846;RAW_GT_COUNT=0,1,0;RAW_MQandDP=266400,74;ReadPosRankSum=-0.062;VarDP=72 GT:AD:DP:GQ:PL:SB 0/1:40,32,0:72:99:846,0,1093,966,1189,2155:19,21,14,18 +chrX 2552459 . A . . END=2552810 GT:DP:GQ:MIN_DP:PL 0/0:60:96:60:0,96,1385 +chrX 2552811 . A G, 1673.06 . AS_QUALapprox=|1687|0;AS_VarDP=0|51|0;DP=55;QUALapprox=1687;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1687,153,0,1687,153,1687:0,0,29,22 +chrX 2552812 . A . . END=2553050 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 2553051 . T G, 887.64 . AS_QUALapprox=|895|0;AS_VarDP=31|33|0;BaseQRankSum=0.397;DP=66;MQRankSum=0.000;QUALapprox=895;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=0.181;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:31,33,0:64:99:895,0,845,988,943,1931:17,14,17,16 +chrX 2553052 . T . . END=2553079 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 2553080 . G A, 876.64 . AS_QUALapprox=|884|0;AS_VarDP=26|32|0;BaseQRankSum=-0.014;DP=59;MQRankSum=0.000;QUALapprox=884;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-0.446;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:26,32,0:58:99:884,0,670,961,766,1727:12,14,17,15 +chrX 2553081 . T . . END=2553272 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,101,1548 +chrX 2553273 . A G, 879.64 . AS_QUALapprox=|887|0;AS_VarDP=22|33|0;BaseQRankSum=-2.458;DP=56;MQRankSum=0.000;QUALapprox=887;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-0.077;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:22,33,0:55:99:887,0,600,953,699,1651:9,13,14,19 +chrX 2553274 . T . . END=2553448 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1653 +chrX 2553449 . C G, 649.64 . AS_QUALapprox=|657|0;AS_VarDP=29|25|0;BaseQRankSum=-1.896;DP=56;MQRankSum=-1.040;QUALapprox=657;RAW_GT_COUNT=0,1,0;RAW_MQandDP=200916,56;ReadPosRankSum=-0.451;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:29,25,0:54:99:657,0,836,744,911,1655:14,15,10,15 +chrX 2553450 . A . . END=2553492 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 2553493 . G A, 438.64 . AS_QUALapprox=|446|0;AS_VarDP=35|18|0;BaseQRankSum=0.591;DP=54;MQRankSum=-1.355;QUALapprox=446;RAW_GT_COUNT=0,1,0;RAW_MQandDP=193716,54;ReadPosRankSum=1.155;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:35,18,0:53:99:446,0,997,552,1051,1603:17,18,7,11 +chrX 2553494 . G . . END=2553605 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,108,1443 +chrX 2553606 . C G, 661.64 . AS_QUALapprox=|669|0;AS_VarDP=30|25|0;BaseQRankSum=0.892;DP=56;MQRankSum=0.000;QUALapprox=669;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=0.516;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:30,25,0:55:99:669,0,828,759,903,1662:11,19,14,11 +chrX 2553607 . A . . END=2553681 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,113,1782 +chrX 2553682 . G T, 736.64 . AS_QUALapprox=|744|0;AS_VarDP=31|27|0;BaseQRankSum=0.352;DP=58;MQRankSum=0.000;QUALapprox=744;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=0.109;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:31,27,0:58:99:744,0,858,837,940,1777:13,18,16,11 +chrX 2553683 . A . . END=2553874 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 2553875 . G C, 1955.06 . AS_QUALapprox=|1969|0;AS_VarDP=0|62|0;DP=64;QUALapprox=1969;RAW_GT_COUNT=0,0,1;RAW_MQandDP=229504,64;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:0,62,0:62:99:1969,185,0,1969,185,1969:0,0,33,29 +chrX 2553876 . C . . END=2553909 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 2553910 . T C, 936.64 . AS_QUALapprox=|944|0;AS_VarDP=33|36|0;BaseQRankSum=-0.547;DP=72;MQRankSum=1.073;QUALapprox=944;RAW_GT_COUNT=0,1,0;RAW_MQandDP=258304,72;ReadPosRankSum=-0.294;VarDP=69 GT:AD:DP:GQ:PL:SB 0/1:33,36,0:69:99:944,0,891,1044,998,2041:23,10,18,18 +chrX 2553911 . G . . END=2553932 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 2553933 . G T, 992.64 . AS_QUALapprox=|1000|0;AS_VarDP=38|37|0;BaseQRankSum=2.486;DP=77;MQRankSum=1.013;QUALapprox=1000;RAW_GT_COUNT=0,1,0;RAW_MQandDP=276304,77;ReadPosRankSum=0.371;VarDP=75 GT:AD:DP:GQ:PL:SB 0/1:38,37,0:75:99:1000,0,920,1114,1032,2145:26,12,20,17 +chrX 2553934 . G . . END=2554385 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,120,1800 +chrX 2554386 . G A, 2055.06 . AS_QUALapprox=|2069|0;AS_VarDP=0|63|0;DP=66;QUALapprox=2069;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=63 GT:AD:DP:GQ:PL:SB 1/1:0,63,0:63:99:2069,189,0,2069,189,2069:0,0,28,35 +chrX 2554387 . T . . END=2554759 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,104,1483 +chrX 2554760 . A C, 469.64 . AS_QUALapprox=|477|0;AS_VarDP=32|19|0;BaseQRankSum=-1.526;DP=53;MQRankSum=0.811;QUALapprox=477;RAW_GT_COUNT=0,1,0;RAW_MQandDP=189700,53;ReadPosRankSum=0.702;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:32,19,0:51:99:477,0,933,573,990,1563:15,17,9,10 +chrX 2554761 . T . . END=2554836 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 2554837 . C T, 515.64 . AS_QUALapprox=|523|0;AS_VarDP=34|21|0;BaseQRankSum=-0.117;DP=57;MQRankSum=0.000;QUALapprox=523;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=0.416;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:34,21,0:55:99:523,0,952,626,1016,1641:21,13,14,7 +chrX 2554838 . C . . END=2555864 GT:DP:GQ:MIN_DP:PL 0/0:62:69:62:0,69,1206 +chrX 2555865 . T G, 1883.06 . AS_QUALapprox=|1897|0;AS_VarDP=0|64|0;DP=65;QUALapprox=1897;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=64 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:1897,190,0,1897,190,1897:0,0,29,35 +chrX 2555866 . G . . END=2555934 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 2555935 . C T, 1689.06 . AS_QUALapprox=|1703|0;AS_VarDP=0|51|0;DP=53;QUALapprox=1703;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1703,153,0,1703,153,1703:0,0,20,31 +chrX 2555936 . C . . END=2557032 GT:DP:GQ:MIN_DP:PL 0/0:58:89:58:0,89,1191 +chrX 2557033 . A G, 436.64 . AS_QUALapprox=|444|0;AS_VarDP=31|19|0;BaseQRankSum=-1.229;DP=53;MQRankSum=0.000;QUALapprox=444;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=0.030;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:31,19,0:50:99:444,0,887,537,944,1481:14,17,11,8 +chrX 2557034 . G . . END=2560697 GT:DP:GQ:MIN_DP:PL 0/0:61:40:61:0,40,1103 +chrX 2560698 . C T, 2032.06 . AS_QUALapprox=|2046|0;AS_VarDP=0|60|0;DP=60;QUALapprox=2046;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:2046,180,0,2046,180,2046:0,0,29,31 +chrX 2560699 . G . . END=2561192 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,103,1355 +chrX 2561193 . GTA G, 2060.03 . AS_QUALapprox=|2074|0;AS_VarDP=0|55|0;DP=64;QUALapprox=2074;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:2074,166,0,2074,166,2074:0,0,26,29 +chrX 2561196 . T . . END=2561209 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 2561210 . CT C, 494.60 . AS_QUALapprox=|502|0;AS_VarDP=24|26|0;BaseQRankSum=1.471;DP=63;MQRankSum=1.081;QUALapprox=502;RAW_GT_COUNT=0,1,0;RAW_MQandDP=224800,63;ReadPosRankSum=1.032;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:24,26,0:50:99:502,0,422,573,500,1073:14,10,11,15 +chrX 2561212 . T . . END=2562401 GT:DP:GQ:MIN_DP:PL 0/0:62:43:62:0,43,1468 +chrX 2562402 . CTATA C, 800.60 . AS_QUALapprox=|808|0;AS_VarDP=17|22|0;BaseQRankSum=-0.073;DP=59;MQRankSum=0.000;QUALapprox=808;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=1.034;VarDP=39 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:17,22,0:39:99:0|1:2562402_CTATA_C:808,0,598,859,665,1524:2562402:8,9,11,11 +chrX 2562404 . A *,C, 424.04 . AS_QUALapprox=|0|802|0;AS_VarDP=1|22|11|0;BaseQRankSum=3.618;DP=56;MQRankSum=0.000;QUALapprox=1656;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;ReadPosRankSum=-0.816;VarDP=34 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 2|1:1,22,11,0:34:99:1|0:2562402_CTATA_C:1656,434,558,854,0,1078,1520,579,1035,1725:2562402:1,0,16,17 +chrX 2562406 . A *,C, 424.04 . AS_QUALapprox=|0|802|0;AS_VarDP=1|22|11|0;BaseQRankSum=0.000;DP=58;MQRankSum=0.000;QUALapprox=1656;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;ReadPosRankSum=-0.765;VarDP=34 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 2|1:1,22,11,0:34:99:1|0:2562402_CTATA_C:1656,434,558,854,0,1078,1520,579,1035,1725:2562402:1,0,16,17 +chrX 2562407 . T . . END=2562944 GT:DP:GQ:MIN_DP:PL 0/0:60:87:60:0,87,1412 +chrX 2562945 . C A, 1777.06 . AS_QUALapprox=|1791|0;AS_VarDP=2|56|0;BaseQRankSum=2.913;DP=60;MQRankSum=0.000;QUALapprox=1791;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;ReadPosRankSum=-0.789;VarDP=58 GT:AD:DP:GQ:PL:SB 1/1:2,56,0:58:99:1791,124,0,1797,168,1840:1,1,24,32 +chrX 2562946 . T . . END=2564133 GT:DP:GQ:MIN_DP:PL 0/0:63:79:63:0,79,1360 +chrX 2564134 . A AT, 334.60 . AS_QUALapprox=|342|0;AS_VarDP=16|21|0;BaseQRankSum=-1.011;DP=46;MQRankSum=0.000;QUALapprox=342;RAW_GT_COUNT=0,1,0;RAW_MQandDP=163600,46;ReadPosRankSum=0.783;VarDP=37 GT:AD:DP:GQ:PL:SB 0/1:16,21,0:37:99:342,0,256,389,318,708:3,13,14,7 +chrX 2564135 . T . . END=2564297 GT:DP:GQ:MIN_DP:PL 0/0:52:70:52:0,70,1286 +chrX 2564298 . A G, 737.64 . AS_QUALapprox=|745|0;AS_VarDP=25|31|0;BaseQRankSum=-1.567;DP=58;MQRankSum=0.000;QUALapprox=745;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-0.058;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:25,31,0:56:99:745,0,647,820,739,1559:11,14,21,10 +chrX 2564299 . A . . END=2564725 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,113,1707 +chrX 2564726 . T C, 884.64 . AS_QUALapprox=|892|0;AS_VarDP=25|33|0;BaseQRankSum=-0.750;DP=60;MQRankSum=0.000;QUALapprox=892;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=-0.503;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:25,33,0:58:99:892,0,655,967,754,1721:14,11,15,18 +chrX 2564727 . G . . END=2564787 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 2564788 . C A, 1963.06 . AS_QUALapprox=|1977|0;AS_VarDP=0|61|0;DP=66;QUALapprox=1977;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=61 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:1977,183,0,1977,183,1977:0,0,34,27 +chrX 2564789 . G . . END=2565012 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,106,1385 +chrX 2565013 . A G, 797.64 . AS_QUALapprox=|805|0;AS_VarDP=27|32|0;BaseQRankSum=-2.182;DP=63;MQRankSum=0.000;QUALapprox=805;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226225,63;ReadPosRankSum=-1.705;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:27,32,0:59:99:805,0,727,886,823,1709:14,13,12,20 +chrX 2565014 . C . . END=2565046 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 2565047 . C A, 911.64 . AS_QUALapprox=|919|0;AS_VarDP=27|34|0;BaseQRankSum=1.358;DP=61;MQRankSum=-0.858;QUALapprox=919;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219025,61;ReadPosRankSum=-0.908;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:27,34,0:61:99:919,0,611,999,713,1712:14,13,12,22 +chrX 2565048 . G . . END=2565097 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 2565098 . CA C, 1496.03 . AS_QUALapprox=|1510|0;AS_VarDP=1|55|0;DP=63;MQRankSum=0.000;QUALapprox=1510;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226225,63;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:1,55,0:56:99:1510,141,0,1513,165,1538:0,1,19,36 +chrX 2565100 . A . . END=2565125 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 2565126 . T C, 807.64 . AS_QUALapprox=|815|0;AS_VarDP=35|31|0;BaseQRankSum=-0.496;DP=68;MQRankSum=0.971;QUALapprox=815;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244225,68;ReadPosRankSum=1.080;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:35,31,0:66:99:815,0,947,919,1040,1959:17,18,15,16 +chrX 2565127 . T . . END=2565247 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,120,1800 +chrX 2565248 . T G, 2243.06 . AS_QUALapprox=|2257|0;AS_VarDP=0|73|0;DP=76;QUALapprox=2257;RAW_GT_COUNT=0,0,1;RAW_MQandDP=273600,76;VarDP=73 GT:AD:DP:GQ:PL:SB 1/1:0,73,0:73:99:2257,219,0,2257,219,2257:0,0,39,34 +chrX 2565249 . T . . END=2565403 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 2565404 . G A, 997.64 . AS_QUALapprox=|1005|0;AS_VarDP=24|38|0;BaseQRankSum=-0.164;DP=64;MQRankSum=0.000;QUALapprox=1005;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=-0.210;VarDP=62 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,38,0:62:99:0|1:2565404_G_A:1005,0,539,1075,652,1727:2565404:12,12,17,21 +chrX 2565405 . A . . END=2565419 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 2565420 . A G, 2480.06 . AS_QUALapprox=|2494|0;AS_VarDP=0|64|0;DP=65;QUALapprox=2494;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=64 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,64,0:64:99:0|1:2565404_G_A:2494,192,0,2494,192,2494:2565404:0,0,31,33 +chrX 2565421 . A . . END=2565703 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,110,1694 +chrX 2565704 . C T, 591.64 . AS_QUALapprox=|599|0;AS_VarDP=23|22|0;BaseQRankSum=-1.059;DP=48;MQRankSum=0.000;QUALapprox=599;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=0.796;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:23,22,0:45:99:599,0,653,669,719,1387:12,11,9,13 +chrX 2565705 . C . . END=2565833 GT:DP:GQ:MIN_DP:PL 0/0:49:60:49:0,60,1369 +chrX 2565834 . T C, 606.64 . AS_QUALapprox=|614|0;AS_VarDP=26|24|0;BaseQRankSum=-1.326;DP=51;MQRankSum=0.000;QUALapprox=614;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-0.554;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:26,24,0:50:99:614,0,694,692,766,1457:15,11,14,10 +chrX 2565835 . A . . END=2565901 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,114,1366 +chrX 2565902 . G A, 734.64 . AS_QUALapprox=|742|0;AS_VarDP=29|28|0;BaseQRankSum=0.887;DP=57;MQRankSum=0.000;QUALapprox=742;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=1.828;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:29,28,0:57:99:742,0,732,829,816,1645:15,14,18,10 +chrX 2565903 . T . . END=2566281 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,102,1404 +chrX 2566282 . C T, 572.64 . AS_QUALapprox=|580|0;AS_VarDP=29|22|0;BaseQRankSum=0.407;DP=54;MQRankSum=0.000;QUALapprox=580;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=-0.057;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:29,22,0:51:99:580,0,787,667,853,1520:13,16,12,10 +chrX 2566283 . C . . END=2567238 GT:DP:GQ:MIN_DP:PL 0/0:56:81:56:0,81,1201 +chrX 2567239 . C A, 653.64 . AS_QUALapprox=|661|0;AS_VarDP=26|26|0;BaseQRankSum=-2.798;DP=53;MQRankSum=0.000;QUALapprox=661;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=-1.044;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:26,26,0:52:99:661,0,746,739,824,1563:10,16,9,17 +chrX 2567240 . C . . END=2567641 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,116,1683 +chrX 2567642 . AT A, 386.60 . AS_QUALapprox=|394|0;AS_VarDP=24|20|0;BaseQRankSum=1.059;DP=57;MQRankSum=0.000;QUALapprox=394;RAW_GT_COUNT=0,1,0;RAW_MQandDP=203625,57;ReadPosRankSum=-0.487;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:24,20,0:44:99:394,0,474,465,534,1000:13,11,11,9 +chrX 2567644 . T . . END=2567656 GT:DP:GQ:MIN_DP:PL 0/0:55:59:55:0,59,1434 +chrX 2567657 . G . . END=2567657 GT:DP:GQ:MIN_DP:PL 0/0:51:9:51:0,9,1244 +chrX 2567658 . T . . END=2568938 GT:DP:GQ:MIN_DP:PL 0/0:64:81:64:0,81,1245 +chrX 2568939 . TG T, 825.60 . AS_QUALapprox=|833|0;AS_VarDP=27|32|0;BaseQRankSum=1.644;DP=60;MQRankSum=0.000;QUALapprox=833;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=-0.655;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:27,32,0:59:99:833,0,699,914,795,1709:10,17,13,19 +chrX 2568941 . G . . END=2570080 GT:DP:GQ:MIN_DP:PL 0/0:57:94:57:0,94,1341 +chrX 2570081 . T C, 2069.06 . AS_QUALapprox=|2083|0;AS_VarDP=0|64|0;DP=65;QUALapprox=2083;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=64 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:2083,192,0,2083,192,2083:0,0,36,28 +chrX 2570082 . C . . END=2570220 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 2570221 . G A, 810.64 . AS_QUALapprox=|818|0;AS_VarDP=28|30|0;BaseQRankSum=0.470;DP=61;MQRankSum=0.000;QUALapprox=818;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-0.545;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:28,30,0:58:99:818,0,738,902,829,1731:12,16,17,13 +chrX 2570222 . C . . END=2571822 GT:DP:GQ:MIN_DP:PL 0/0:67:90:67:0,90,1384 +chrX 2571823 . A G, 675.64 . AS_QUALapprox=|683|0;AS_VarDP=34|25|0;BaseQRankSum=2.076;DP=62;MQRankSum=-1.132;QUALapprox=683;RAW_GT_COUNT=0,1,0;RAW_MQandDP=222001,62;ReadPosRankSum=0.660;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:34,25,0:59:99:683,0,915,784,990,1774:20,14,13,12 +chrX 2571824 . T . . END=2571934 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 2571935 . C T, 883.64 . AS_QUALapprox=|891|0;AS_VarDP=28|35|0;BaseQRankSum=-0.629;DP=66;MQRankSum=-0.862;QUALapprox=891;RAW_GT_COUNT=0,1,0;RAW_MQandDP=236601,66;ReadPosRankSum=-1.155;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:28,35,0:63:99:891,0,710,975,814,1789:16,12,21,14 +chrX 2571936 . T . . END=2572718 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 2572719 . T C, 511.64 . AS_QUALapprox=|519|0;AS_VarDP=29|21|0;BaseQRankSum=0.139;DP=58;MQRankSum=0.000;QUALapprox=519;RAW_GT_COUNT=0,1,0;RAW_MQandDP=206356,58;ReadPosRankSum=-1.081;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:29,21,0:50:99:519,0,809,606,871,1477:9,20,13,8 +chrX 2572720 . G . . END=2573054 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,112,1800 +chrX 2573055 . C T, 1461.64 . AS_QUALapprox=|1469|0;AS_VarDP=35|38|0;BaseQRankSum=1.310;DP=73;MQRankSum=0.000;QUALapprox=1469;RAW_GT_COUNT=0,1,0;RAW_MQandDP=262800,73;ReadPosRankSum=-1.569;VarDP=73 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:35,38,0:73:99:0|1:2573055_C_T:1469,0,1355,1574,1470,3044:2573055:21,14,17,21 +chrX 2573056 . T . . END=2573058 GT:DP:GQ:MIN_DP:PL 0/0:73:99:73:0,120,1800 +chrX 2573059 . C G, 1461.64 . AS_QUALapprox=|1469|0;AS_VarDP=35|38|0;BaseQRankSum=0.359;DP=73;MQRankSum=0.000;QUALapprox=1469;RAW_GT_COUNT=0,1,0;RAW_MQandDP=262800,73;ReadPosRankSum=-0.696;VarDP=73 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:35,38,0:73:99:0|1:2573055_C_T:1469,0,1355,1574,1470,3044:2573055:21,14,17,21 +chrX 2573060 . A . . END=2573292 GT:DP:GQ:MIN_DP:PL 0/0:74:99:74:0,120,1800 +chrX 2573293 . A C, 1892.06 . AS_QUALapprox=|1906|0;AS_VarDP=0|58|0;DP=58;QUALapprox=1906;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=58 GT:AD:DP:GQ:PL:SB 1/1:0,58,0:58:99:1906,174,0,1906,174,1906:0,0,25,33 +chrX 2573294 . T . . END=2573377 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 2573378 . C G, 1811.06 . AS_QUALapprox=|1825|0;AS_VarDP=0|56|0;DP=57;QUALapprox=1825;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1825,167,0,1825,167,1825:0,0,22,34 +chrX 2573379 . T . . END=2573437 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 2573438 . T C, 681.64 . AS_QUALapprox=|689|0;AS_VarDP=36|19|0;BaseQRankSum=-0.388;DP=56;MQRankSum=0.000;QUALapprox=689;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-1.268;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:36,19,0:55:99:0|1:2573438_T_C:689,0,1429,798,1486,2284:2573438:17,19,9,10 +chrX 2573439 . A . . END=2573441 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 2573442 . T C, 681.64 . AS_QUALapprox=|689|0;AS_VarDP=36|19|0;BaseQRankSum=0.081;DP=55;MQRankSum=0.000;QUALapprox=689;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-0.850;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:36,19,0:55:99:0|1:2573438_T_C:689,0,1429,798,1486,2284:2573438:17,19,9,10 +chrX 2573443 . A . . END=2573457 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 2573458 . T C, 581.64 . AS_QUALapprox=|589|0;AS_VarDP=38|17|0;BaseQRankSum=-1.130;DP=58;MQRankSum=0.000;QUALapprox=589;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=1.258;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:38,17,0:55:99:0|1:2573438_T_C:589,0,1478,704,1529,2233:2573438:18,20,9,8 +chrX 2573459 . G . . END=2573629 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,119,1529 +chrX 2573630 . G A, 771.64 . AS_QUALapprox=|779|0;AS_VarDP=29|30|0;BaseQRankSum=1.108;DP=61;MQRankSum=0.000;QUALapprox=779;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=0.440;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:29,30,0:59:99:779,0,721,867,811,1677:12,17,15,15 +chrX 2573631 . A . . END=2573678 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 2573679 . C T, 844.64 . AS_QUALapprox=|852|0;AS_VarDP=28|32|0;BaseQRankSum=-0.232;DP=61;MQRankSum=-0.902;QUALapprox=852;RAW_GT_COUNT=0,1,0;RAW_MQandDP=217764,61;ReadPosRankSum=-0.845;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:28,32,0:60:99:852,0,717,936,814,1749:13,15,14,18 +chrX 2573680 . G . . END=2573853 GT:DP:GQ:MIN_DP:PL 0/0:50:53:50:0,53,1033 +chrX 2573854 . T C, 1259.06 . AS_QUALapprox=|1273|0;AS_VarDP=0|33|0;DP=33;QUALapprox=1273;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118800,33;VarDP=33 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,33,0:33:99:0|1:2573854_T_C:1273,99,0,1273,99,1273:2573854:0,0,21,12 +chrX 2573855 . G . . END=2573859 GT:DP:GQ:MIN_DP:PL 0/0:31:54:31:0,54,810 +chrX 2573860 . CA C, 1198.02 . AS_QUALapprox=|1212|0;AS_VarDP=4|35|0;BaseQRankSum=-0.725;DP=48;MQRankSum=4.300;QUALapprox=1212;RAW_GT_COUNT=0,0,1;RAW_MQandDP=166800,48;ReadPosRankSum=1.102;VarDP=39 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:4,35,0:39:36:0|1:2573854_T_C:1212,36,0,1224,105,1293:2573854:0,4,22,13 +chrX 2573862 . A . . END=2573898 GT:DP:GQ:MIN_DP:PL 0/0:43:58:43:0,58,1116 +chrX 2573899 . A G, 587.64 . AS_QUALapprox=|595|0;AS_VarDP=17|21|0;BaseQRankSum=-0.807;DP=40;MQRankSum=0.000;QUALapprox=595;RAW_GT_COUNT=0,1,0;RAW_MQandDP=144000,40;ReadPosRankSum=0.015;VarDP=38 GT:AD:DP:GQ:PL:SB 0/1:17,21,0:38:99:595,0,442,646,505,1151:8,9,8,13 +chrX 2573900 . T . . END=2573984 GT:DP:GQ:MIN_DP:PL 0/0:46:75:46:0,75,1125 +chrX 2573985 . ATGTGTGTGTGTGTG A, 1747.03 . AS_QUALapprox=|1761|0;AS_VarDP=0|39|0;DP=48;QUALapprox=1761;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169825,48;VarDP=39 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,39,0:39:99:0|1:2573985_ATGTGTGTGTGTGTG_A:1761,120,0,1761,120,1761:2573985:0,0,17,22 +chrX 2574000 . T . . END=2574018 GT:DP:GQ:MIN_DP:PL 0/0:41:82:41:0,82,1215 +chrX 2574019 . GCGCGCGCGCGCGCGCGCACGCA G, 1876.03 . AS_QUALapprox=|1890|0;AS_VarDP=2|44|0;DP=47;MQRankSum=4.797;QUALapprox=1890;RAW_GT_COUNT=0,0,1;RAW_MQandDP=163994,47;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:2,44,0:46:48:0|1:2573985_ATGTGTGTGTGTGTG_A:1890,48,0,1896,132,1980:2573985:1,1,19,25 +chrX 2574042 . C . . END=2574260 GT:DP:GQ:MIN_DP:PL 0/0:45:52:45:0,52,868 +chrX 2574261 . C T, 1455.06 . AS_QUALapprox=|1469|0;AS_VarDP=1|45|0;BaseQRankSum=-0.323;DP=46;MQRankSum=0.000;QUALapprox=1469;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;ReadPosRankSum=0.829;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:1,45,0:46:99:1469,104,0,1472,135,1503:0,1,24,21 +chrX 2574262 . G . . END=2574492 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,114,1470 +chrX 2574493 . T C, 703.64 . AS_QUALapprox=|711|0;AS_VarDP=27|27|0;BaseQRankSum=-1.218;DP=57;MQRankSum=0.000;QUALapprox=711;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-0.156;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:27,27,0:54:99:711,0,756,792,837,1629:11,16,12,15 +chrX 2574494 . G . . END=2574850 GT:DP:GQ:MIN_DP:PL 0/0:56:91:56:0,91,1509 +chrX 2574851 . A G, 2327.06 . AS_QUALapprox=|2341|0;AS_VarDP=0|54|0;DP=55;QUALapprox=2341;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,54,0:54:99:0|1:2574851_A_G:2341,162,0,2341,162,2341:2574851:0,0,33,21 +chrX 2574852 . C . . END=2574861 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 2574862 . T A, 2258.06 . AS_QUALapprox=|2272|0;AS_VarDP=0|52|0;DP=53;QUALapprox=2272;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,52,0:52:99:0|1:2574851_A_G:2272,156,0,2272,156,2272:2574851:0,0,34,18 +chrX 2574863 . G . . END=2575183 GT:DP:GQ:MIN_DP:PL 0/0:60:67:60:0,67,1456 +chrX 2575184 . C T, 551.64 . AS_QUALapprox=|559|0;AS_VarDP=36|21|0;BaseQRankSum=1.788;DP=58;MQRankSum=0.000;QUALapprox=559;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=0.108;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:36,21,0:57:99:559,0,1015,667,1078,1745:21,15,13,8 +chrX 2575185 . A . . END=2575220 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 2575221 . C T, 591.64 . AS_QUALapprox=|599|0;AS_VarDP=37|23|0;BaseQRankSum=1.560;DP=63;MQRankSum=0.000;QUALapprox=599;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=-0.768;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:37,23,0:60:99:599,0,986,710,1055,1765:18,19,12,11 +chrX 2575222 . C . . END=2575262 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 2575263 . C T, 1074.64 . AS_QUALapprox=|1082|0;AS_VarDP=16|38|0;BaseQRankSum=0.234;DP=54;MQRankSum=0.000;QUALapprox=1082;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=-0.606;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:16,38,0:54:99:1082,0,364,1130,478,1608:10,6,18,20 +chrX 2575264 . C . . END=2575343 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 2575344 . C G, 643.64 . AS_QUALapprox=|651|0;AS_VarDP=41|25|0;BaseQRankSum=2.743;DP=66;MQRankSum=0.000;QUALapprox=651;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=-0.040;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:41,25,0:66:99:651,0,1051,774,1127,1901:20,21,11,14 +chrX 2575345 . C . . END=2575490 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 2575491 . T C, 1687.06 . AS_QUALapprox=|1701|0;AS_VarDP=0|52|0;DP=55;QUALapprox=1701;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1701,156,0,1701,156,1701:0,0,29,23 +chrX 2575492 . G . . END=2575534 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 2575535 . T C, 713.64 . AS_QUALapprox=|721|0;AS_VarDP=26|28|0;BaseQRankSum=-1.915;DP=57;MQRankSum=-0.927;QUALapprox=721;RAW_GT_COUNT=0,1,0;RAW_MQandDP=204625,57;ReadPosRankSum=1.255;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:26,28,0:54:99:721,0,732,799,815,1614:12,14,18,10 +chrX 2575536 . G . . END=2575942 GT:DP:GQ:MIN_DP:PL 0/0:62:92:62:0,92,1400 +chrX 2575943 . G A, 1134.64 . AS_QUALapprox=|1142|0;AS_VarDP=29|31|0;BaseQRankSum=2.077;DP=60;MQRankSum=0.000;QUALapprox=1142;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=-0.081;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,31,0:60:99:0|1:2575943_G_A:1142,0,991,1229,1085,2313:2575943:15,14,17,14 +chrX 2575944 . G . . END=2575971 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 2575972 . T TC, 1145.60 . AS_QUALapprox=|1153|0;AS_VarDP=26|30|0;BaseQRankSum=0.607;DP=56;MQRankSum=0.000;QUALapprox=1153;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-0.548;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,30,0:56:99:0|1:2575943_G_A:1153,0,988,1231,1078,2309:2575943:12,14,17,13 +chrX 2575973 . T . . END=2576016 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 2576017 . T C, 785.64 . AS_QUALapprox=|793|0;AS_VarDP=26|29|0;BaseQRankSum=-0.580;DP=56;MQRankSum=0.000;QUALapprox=793;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=0.270;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:26,29,0:55:99:793,0,707,871,794,1665:12,14,12,17 +chrX 2576018 . G . . END=2576055 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 2576056 . C A, 890.64 . AS_QUALapprox=|898|0;AS_VarDP=22|26|0;BaseQRankSum=-2.557;DP=50;MQRankSum=1.584;QUALapprox=898;RAW_GT_COUNT=0,1,0;RAW_MQandDP=177610,50;ReadPosRankSum=0.155;VarDP=48 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,26,0:48:99:0|1:2576056_C_A:898,0,764,964,842,1806:2576056:8,14,10,16 +chrX 2576057 . C . . END=2576077 GT:DP:GQ:MIN_DP:PL 0/0:46:63:46:0,63,945 +chrX 2576078 . GTTTT G,GT, 1700.02 . AS_QUALapprox=|988|790|0;AS_VarDP=0|25|21|0;DP=48;QUALapprox=1717;RAW_GT_COUNT=0,0,1;RAW_MQandDP=166410,48;VarDP=46 GT:AD:DP:GQ:PL:SB 1/2:0,25,21,0:46:99:1717,729,849,995,0,927,1736,837,1000,1819:0,0,17,29 +chrX 2576083 . T . . END=2576085 GT:DP:GQ:MIN_DP:PL 0/0:45:81:45:0,81,1215 +chrX 2576086 . T G, 627.64 . AS_QUALapprox=|635|0;AS_VarDP=23|21|0;BaseQRankSum=-1.492;DP=45;MQRankSum=-1.060;QUALapprox=635;RAW_GT_COUNT=0,1,0;RAW_MQandDP=155610,45;ReadPosRankSum=-0.494;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:23,21,0:44:99:635,0,881,705,943,1648:7,16,9,12 +chrX 2576087 . T G, 869.64 . AS_QUALapprox=|877|0;AS_VarDP=22|23|0;BaseQRankSum=-1.331;DP=45;MQRankSum=1.058;QUALapprox=877;RAW_GT_COUNT=0,1,0;RAW_MQandDP=155610,45;ReadPosRankSum=0.447;VarDP=45 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,23,0:45:99:0|1:2576056_C_A:877,0,824,943,893,1836:2576056:9,13,7,16 +chrX 2576088 . T . . END=2576089 GT:DP:GQ:MIN_DP:PL 0/0:42:84:42:0,84,1260 +chrX 2576090 . T G, 843.64 . AS_QUALapprox=|851|0;AS_VarDP=20|22|0;BaseQRankSum=0.149;DP=43;MQRankSum=1.113;QUALapprox=851;RAW_GT_COUNT=0,1,0;RAW_MQandDP=148410,43;ReadPosRankSum=0.118;VarDP=42 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:20,22,0:42:99:0|1:2576056_C_A:851,0,763,911,830,1741:2576056:9,11,7,15 +chrX 2576091 . T . . END=2576246 GT:DP:GQ:MIN_DP:PL 0/0:43:48:43:0,48,1048 +chrX 2576247 . G A, 765.64 . AS_QUALapprox=|773|0;AS_VarDP=25|30|0;BaseQRankSum=0.293;DP=55;MQRankSum=0.000;QUALapprox=773;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-0.271;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:25,30,0:55:99:773,0,594,848,684,1532:10,15,15,15 +chrX 2576248 . C . . END=2576273 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 2576274 . G GT, 745.60 . AS_QUALapprox=|753|0;AS_VarDP=21|29|0;BaseQRankSum=0.828;DP=57;MQRankSum=0.000;QUALapprox=753;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-0.256;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:21,29,0:50:99:753,0,505,816,592,1409:10,11,18,11 +chrX 2576275 . T . . END=2576691 GT:DP:GQ:MIN_DP:PL 0/0:32:27:31:0,27,923 +chrX 2576692 . C CA, 272.60 . AS_QUALapprox=|280|0;AS_VarDP=10|20|0;BaseQRankSum=-0.208;DP=51;MQRankSum=-0.967;QUALapprox=280;RAW_GT_COUNT=0,1,0;RAW_MQandDP=175600,51;ReadPosRankSum=-2.712;VarDP=30 GT:AD:DP:GQ:PL:SB 0/1:10,20,0:30:99:280,0,105,309,163,471:7,3,6,14 +chrX 2576693 . A . . END=2577477 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 2577478 . C T, 615.64 . AS_QUALapprox=|623|0;AS_VarDP=29|24|0;BaseQRankSum=-1.462;DP=56;MQRankSum=0.000;QUALapprox=623;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=1.341;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:29,24,0:53:99:623,0,825,710,898,1607:16,13,9,15 +chrX 2577479 . C . . END=2578617 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,118,1524 +chrX 2578618 . G C, 782.64 . AS_QUALapprox=|790|0;AS_VarDP=30|31|0;BaseQRankSum=-2.373;DP=68;MQRankSum=0.000;QUALapprox=790;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=1.046;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:30,31,0:61:99:790,0,823,879,916,1795:10,20,12,19 +chrX 2578619 . G . . END=2578759 GT:DP:GQ:MIN_DP:PL 0/0:51:59:51:0,59,1349 +chrX 2578760 . G C, 397.64 . AS_QUALapprox=|405|0;AS_VarDP=22|18|0;BaseQRankSum=-0.826;DP=64;MQRankSum=0.000;QUALapprox=405;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=0.503;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:22,18,0:40:99:405,0,571,470,624,1094:7,15,5,13 +chrX 2578761 . T . . END=2578874 GT:DP:GQ:MIN_DP:PL 0/0:16:24:13:0,24,360 +chrX 2578875 . A . . END=2578878 GT:DP:GQ:MIN_DP:PL 0/0:11:15:11:0,15,225 +chrX 2578879 . T . . END=2578879 GT:DP:GQ:MIN_DP:PL 0/0:11:21:11:0,21,315 +chrX 2578880 . G T, 268.05 . AS_QUALapprox=|282|0;AS_VarDP=0|9|0;DP=54;QUALapprox=282;RAW_GT_COUNT=0,0,1;RAW_MQandDP=189938,54;VarDP=9 GT:AD:DP:GQ:PL:SB 1/1:0,9,0:9:27:282,27,0,282,27,282:0,0,3,6 +chrX 2578881 . A . . END=2578896 GT:DP:GQ:MIN_DP:PL 0/0:10:21:9:0,21,228 +chrX 2578897 . CT C, 263.02 . AS_QUALapprox=|277|0;AS_VarDP=0|10|0;DP=47;QUALapprox=277;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;VarDP=10 GT:AD:DP:GQ:PL:SB 1/1:0,10,0:10:30:277,30,0,277,30,277:0,0,6,4 +chrX 2578899 . T . . END=2578939 GT:DP:GQ:MIN_DP:PL 0/0:18:30:12:0,30,318 +chrX 2578940 . T C, 1156.06 . AS_QUALapprox=|1170|0;AS_VarDP=0|26|0;DP=39;QUALapprox=1170;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140400,39;VarDP=26 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,26,0:26:78:0|1:2578940_T_C:1170,78,0,1170,78,1170:2578940:0,0,17,9 +chrX 2578941 . T . . END=2578953 GT:DP:GQ:MIN_DP:PL 0/0:29:73:29:0,73,834 +chrX 2578954 . G A, 1426.06 . AS_QUALapprox=|1440|0;AS_VarDP=0|32|0;DP=44;QUALapprox=1440;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158400,44;VarDP=32 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,32,0:32:96:0|1:2578940_T_C:1440,96,0,1440,96,1440:2578940:0,0,20,12 +chrX 2578955 . A . . END=2578967 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,111,1280 +chrX 2578968 . G C, 1966.06 . AS_QUALapprox=|1980|0;AS_VarDP=0|44|0;DP=55;QUALapprox=1980;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,44,0:44:99:0|1:2578968_G_C:1980,132,0,1980,132,1980:2578968:0,0,28,16 +chrX 2578969 . A . . END=2578974 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,111,1665 +chrX 2578975 . T G, 2101.06 . AS_QUALapprox=|2115|0;AS_VarDP=0|47|0;DP=57;QUALapprox=2115;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,47,0:47:99:0|1:2578968_G_C:2115,141,0,2115,141,2115:2578968:0,0,29,18 +chrX 2578976 . T . . END=2578996 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,120,1240 +chrX 2578997 . C T, 1899.06 . AS_QUALapprox=|1913|0;AS_VarDP=0|43|0;DP=53;QUALapprox=1913;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=43 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,43,0:43:99:0|1:2578968_G_C:1913,129,0,1913,129,1913:2578968:0,0,26,17 +chrX 2578998 . G . . END=2579019 GT:DP:GQ:MIN_DP:PL 0/0:44:76:44:0,76,1345 +chrX 2579020 . A G, 487.64 . AS_QUALapprox=|495|0;AS_VarDP=25|20|0;BaseQRankSum=-1.561;DP=55;MQRankSum=0.000;QUALapprox=495;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=1.143;VarDP=45 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,20,0:45:99:0|1:2578968_G_C:495,0,714,570,773,1344:2578968:16,9,13,7 +chrX 2579021 . C . . END=2579376 GT:DP:GQ:MIN_DP:PL 0/0:55:97:55:0,97,1383 +chrX 2579377 . C CT, 1288.03 . AS_QUALapprox=|1302|0;AS_VarDP=0|49|0;DP=61;QUALapprox=1302;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1302,147,0,1302,147,1302:0,0,19,30 +chrX 2579378 . T . . END=2579498 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 2579499 . T C, 2475.06 . AS_QUALapprox=|2489|0;AS_VarDP=0|56|0;DP=56;QUALapprox=2489;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,56,0:56:99:0|1:2579499_T_C:2489,169,0,2489,169,2489:2579499:0,0,26,30 +chrX 2579500 . C T, 2475.06 . AS_QUALapprox=|2489|0;AS_VarDP=0|56|0;DP=56;QUALapprox=2489;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,56,0:56:99:0|1:2579499_T_C:2489,169,0,2489,169,2489:2579499:0,0,26,30 +chrX 2579501 . A . . END=2580140 GT:DP:GQ:MIN_DP:PL 0/0:54:80:54:0,80,1142 +chrX 2580141 . T C, 1672.06 . AS_QUALapprox=|1686|0;AS_VarDP=0|55|0;DP=57;QUALapprox=1686;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1686,164,0,1686,164,1686:0,0,33,22 +chrX 2580142 . G . . END=2581185 GT:DP:GQ:MIN_DP:PL 0/0:37:21:35:0,21,968 +chrX 2581186 . T . . END=2581186 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,978 +chrX 2581187 . C . . END=2581190 GT:DP:GQ:MIN_DP:PL 0/0:36:56:36:0,56,1017 +chrX 2581191 . C . . END=2581193 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,880 +chrX 2581194 . A . . END=2581194 GT:DP:GQ:MIN_DP:PL 0/0:45:51:45:0,51,1295 +chrX 2581195 . GA G,GAA, 531.02 . AS_QUALapprox=|202|306|0;AS_VarDP=0|12|20|0;DP=54;QUALapprox=548;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183201,54;VarDP=32 GT:AD:DP:GQ:PL:SB 1/2:0,12,20,0:32:99:548,346,443,242,0,260,587,424,289,674:0,0,13,19 +chrX 2581197 . A . . END=2583100 GT:DP:GQ:MIN_DP:PL 0/0:62:43:62:0,43,1276 +chrX 2583101 . G GT, 648.60 . AS_QUALapprox=|656|0;AS_VarDP=31|33|0;BaseQRankSum=0.000;DP=75;MQRankSum=0.000;QUALapprox=656;RAW_GT_COUNT=0,1,0;RAW_MQandDP=270000,75;ReadPosRankSum=-1.525;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:31,33,0:64:99:656,0,610,749,708,1457:18,13,16,17 +chrX 2583102 . T . . END=2591307 GT:DP:GQ:MIN_DP:PL 0/0:56:24:39:0,24,897 +chrX 2591308 . G GT, 787.03 . AS_QUALapprox=|801|0;AS_VarDP=1|35|0;BaseQRankSum=-0.511;DP=56;MQRankSum=0.000;QUALapprox=801;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201249,56;ReadPosRankSum=1.252;VarDP=36 GT:AD:DP:GQ:PL:SB 1/1:1,35,0:36:81:801,81,0,804,104,827:1,0,15,20 +chrX 2591309 . T . . END=2593826 GT:DP:GQ:MIN_DP:PL 0/0:63:35:58:0,35,1132 +chrX 2593827 . T . . END=2593827 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,1008 +chrX 2593828 . TAA T, 291.60 . AS_QUALapprox=|299|0;AS_VarDP=19|12|0;BaseQRankSum=0.612;DP=45;MQRankSum=-1.192;QUALapprox=299;RAW_GT_COUNT=0,1,0;RAW_MQandDP=161104,45;ReadPosRankSum=-0.070;VarDP=31 GT:AD:DP:GQ:PL:SB 0/1:19,12,0:31:99:299,0,466,356,502,858:12,7,5,7 +chrX 2593831 . A . . END=2593844 GT:DP:GQ:MIN_DP:PL 0/0:49:90:49:0,90,1350 +chrX 2593845 . A . . END=2593846 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,1032 +chrX 2593847 . G . . END=2594650 GT:DP:GQ:MIN_DP:PL 0/0:49:22:42:0,22,987 +chrX 2594651 . C T, 910.64 . AS_QUALapprox=|918|0;AS_VarDP=37|34|0;BaseQRankSum=0.479;DP=71;MQRankSum=0.000;QUALapprox=918;RAW_GT_COUNT=0,1,0;RAW_MQandDP=255600,71;ReadPosRankSum=1.589;VarDP=71 GT:AD:DP:GQ:PL:SB 0/1:37,34,0:71:99:918,0,999,1030,1101,2131:20,17,24,10 +chrX 2594652 . T . . END=2595192 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,111,1485 +chrX 2595193 . G T, 869.64 . AS_QUALapprox=|877|0;AS_VarDP=37|33|0;BaseQRankSum=-1.114;DP=71;MQRankSum=0.000;QUALapprox=877;RAW_GT_COUNT=0,1,0;RAW_MQandDP=255600,71;ReadPosRankSum=-0.547;VarDP=70 GT:AD:DP:GQ:PL:SB 0/1:37,33,0:70:99:877,0,1014,987,1113,2101:24,13,16,17 +chrX 2595194 . G . . END=2597157 GT:DP:GQ:MIN_DP:PL 0/0:61:59:61:0,59,1072 +chrX 2597158 . C . . END=2597158 GT:DP:GQ:MIN_DP:PL 0/0:39:19:39:0,19,1099 +chrX 2597159 . T . . END=2597167 GT:DP:GQ:MIN_DP:PL 0/0:44:33:42:0,33,1242 +chrX 2597168 . T . . END=2597168 GT:DP:GQ:MIN_DP:PL 0/0:54:0:54:0,0,636 +chrX 2597169 . G . . END=2597172 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 2597173 . A . . END=2597173 GT:DP:GQ:MIN_DP:PL 0/0:52:0:52:0,0,656 +chrX 2597174 . G . . END=2597176 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 2597177 . T . . END=2597177 GT:DP:GQ:MIN_DP:PL 0/0:53:0:53:0,0,640 +chrX 2597178 . G . . END=2597180 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 2597181 . C . . END=2597181 GT:DP:GQ:MIN_DP:PL 0/0:50:0:50:0,0,756 +chrX 2597182 . G . . END=2599488 GT:DP:GQ:MIN_DP:PL 0/0:60:74:60:0,74,1191 +chrX 2599489 . CA C, 184.60 . AS_QUALapprox=|192|0;AS_VarDP=24|13|0;BaseQRankSum=-1.483;DP=59;MQRankSum=0.000;QUALapprox=192;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-0.019;VarDP=37 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,13,0:37:99:0|1:2599489_CA_C:192,0,969,264,1008,1272:2599489:12,12,6,7 +chrX 2599491 . A . . END=2599504 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 2599505 . A AGAG, 1256.60 . AS_QUALapprox=|1264|0;AS_VarDP=18|33|0;BaseQRankSum=0.063;DP=57;MQRankSum=0.000;QUALapprox=1264;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-0.562;VarDP=51 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:18,33,0:51:99:1|0:2599489_CA_C:1264,0,647,1318,746,2064:2599489:8,10,14,19 +chrX 2599506 . A . . END=2600036 GT:DP:GQ:MIN_DP:PL 0/0:76:99:76:0,120,1800 +chrX 2600037 . C T, 2121.06 . AS_QUALapprox=|2135|0;AS_VarDP=0|64|0;DP=65;QUALapprox=2135;RAW_GT_COUNT=0,0,1;RAW_MQandDP=233316,65;VarDP=64 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:2135,192,0,2135,192,2135:0,0,25,39 +chrX 2600038 . T . . END=2602612 GT:DP:GQ:MIN_DP:PL 0/0:63:97:63:0,97,1355 +chrX 2602613 . G T, 1525.06 . AS_QUALapprox=|1539|0;AS_VarDP=0|46|0;DP=48;QUALapprox=1539;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1539,138,0,1539,138,1539:0,0,22,24 +chrX 2602614 . A . . END=2603871 GT:DP:GQ:MIN_DP:PL 0/0:64:63:64:0,63,1422 +chrX 2603872 . G T, 1683.06 . AS_QUALapprox=|1697|0;AS_VarDP=0|52|0;DP=55;QUALapprox=1697;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1697,156,0,1697,156,1697:0,0,30,22 +chrX 2603873 . G . . END=2603976 GT:DP:GQ:MIN_DP:PL 0/0:58:60:58:0,60,1310 +chrX 2603977 . G GA, 1177.03 . AS_QUALapprox=|1191|0;AS_VarDP=0|49|0;DP=58;QUALapprox=1191;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1191,147,0,1191,147,1191:0,0,24,25 +chrX 2603978 . A . . END=2604810 GT:DP:GQ:MIN_DP:PL 0/0:63:56:63:0,56,1574 +chrX 2604811 . C T, 960.64 . AS_QUALapprox=|968|0;AS_VarDP=32|37|0;BaseQRankSum=-0.053;DP=73;MQRankSum=0.000;QUALapprox=968;RAW_GT_COUNT=0,1,0;RAW_MQandDP=262800,73;ReadPosRankSum=0.596;VarDP=69 GT:AD:DP:GQ:PL:SB 0/1:32,37,0:69:99:968,0,800,1064,911,1975:13,19,22,15 +chrX 2604812 . G . . END=2605071 GT:DP:GQ:MIN_DP:PL 0/0:81:99:81:0,120,1800 +chrX 2605072 . T C, 2063.06 . AS_QUALapprox=|2077|0;AS_VarDP=0|64|0;DP=66;QUALapprox=2077;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=64 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:2077,192,0,2077,192,2077:0,0,33,31 +chrX 2605073 . T . . END=2605161 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 2605162 . G A, 1768.06 . AS_QUALapprox=|1782|0;AS_VarDP=1|55|0;BaseQRankSum=-0.357;DP=57;MQRankSum=0.000;QUALapprox=1782;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;ReadPosRankSum=-0.681;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:1,55,0:56:99:1782,133,0,1785,165,1816:0,1,27,28 +chrX 2605163 . A . . END=2606062 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,102,1371 +chrX 2606063 . C CT,CTT, 237.60 . AS_QUALapprox=|245|145|0;AS_VarDP=19|9|4|0;BaseQRankSum=-1.058;DP=49;MQRankSum=-1.145;QUALapprox=245;RAW_GT_COUNT=0,1,0;RAW_MQandDP=174400,49;ReadPosRankSum=-0.787;VarDP=32 GT:AD:DP:GQ:PL:SB 0/1:19,9,4,0:32:99:245,0,357,100,350,645,252,433,617,722:9,10,6,7 +chrX 2606064 . T . . END=2606078 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,111,1665 +chrX 2606079 . G . . END=2606079 GT:DP:GQ:MIN_DP:PL 0/0:49:14:49:0,14,1266 +chrX 2606080 . A . . END=2607047 GT:DP:GQ:MIN_DP:PL 0/0:55:71:55:0,71,1125 +chrX 2607048 . T TCCAC, 900.03 . AS_QUALapprox=|914|0;AS_VarDP=0|21|0;DP=38;QUALapprox=914;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;VarDP=21 GT:AD:DP:GQ:PL:SB 1/1:0,21,0:21:63:914,63,0,914,63,915:0,0,1,20 +chrX 2607049 . C . . END=2607063 GT:DP:GQ:MIN_DP:PL 0/0:32:20:23:0,20,630 +chrX 2607064 . T . . END=2607064 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,485 +chrX 2607065 . C . . END=2607065 GT:DP:GQ:MIN_DP:PL 0/0:29:69:29:0,69,1035 +chrX 2607066 . T . . END=2607067 GT:DP:GQ:MIN_DP:PL 0/0:29:0:29:0,0,532 +chrX 2607068 . T . . END=2607091 GT:DP:GQ:MIN_DP:PL 0/0:30:21:30:0,21,798 +chrX 2607092 . A . . END=2607092 GT:DP:GQ:MIN_DP:PL 0/0:30:6:30:0,6,793 +chrX 2607093 . A . . END=2607826 GT:DP:GQ:MIN_DP:PL 0/0:62:41:62:0,41,894 +chrX 2607827 . T C, 1691.06 . AS_QUALapprox=|1705|0;AS_VarDP=0|55|0;DP=58;QUALapprox=1705;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1705,164,0,1705,164,1705:0,0,28,27 +chrX 2607828 . G . . END=2609047 GT:DP:GQ:MIN_DP:PL 0/0:65:85:65:0,85,1473 +chrX 2609048 . T G, 1832.06 . AS_QUALapprox=|1846|0;AS_VarDP=0|56|0;DP=58;QUALapprox=1846;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1846,168,0,1846,168,1846:0,0,26,30 +chrX 2609049 . C . . END=2609407 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,118,1772 +chrX 2609408 . GGCGCGCCGTGGC G, 1380.60 . AS_QUALapprox=|1388|0;AS_VarDP=38|36|0;BaseQRankSum=0.686;DP=84;MQRankSum=0.000;QUALapprox=1388;RAW_GT_COUNT=0,1,0;RAW_MQandDP=302400,84;ReadPosRankSum=0.749;VarDP=74 GT:AD:DP:GQ:PL:SB 0/1:38,36,0:74:99:1388,0,1481,1502,1591,3093:19,19,19,17 +chrX 2609421 . G . . END=2609835 GT:DP:GQ:MIN_DP:PL 0/0:75:99:75:0,118,1800 +chrX 2609836 . T G, 923.64 . AS_QUALapprox=|931|0;AS_VarDP=41|37|0;BaseQRankSum=-0.819;DP=78;MQRankSum=0.000;QUALapprox=931;RAW_GT_COUNT=0,1,0;RAW_MQandDP=280800,78;ReadPosRankSum=-1.952;VarDP=78 GT:AD:DP:GQ:PL:SB 0/1:41,37,0:78:99:931,0,1105,1053,1215,2269:19,22,14,23 +chrX 2609837 . T . . END=2610312 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,104,1291 +chrX 2610313 . TTCCTCTCTCTCTCCTC T, 611.60 . AS_QUALapprox=|619|0;AS_VarDP=22|17|0;BaseQRankSum=-0.051;DP=45;MQRankSum=0.000;QUALapprox=619;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=0.116;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:22,17,0:39:99:619,0,848,685,900,1585:10,12,10,7 +chrX 2610330 . T . . END=2610356 GT:DP:GQ:MIN_DP:PL 0/0:39:87:39:0,87,1305 +chrX 2610357 . CTCTCTCTCT C, 529.60 . AS_QUALapprox=|537|0;AS_VarDP=20|15|0;BaseQRankSum=-0.726;DP=41;MQRankSum=0.000;QUALapprox=537;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147600,41;ReadPosRankSum=0.181;VarDP=35 GT:AD:DP:GQ:PL:SB 0/1:20,15,0:35:99:537,0,763,597,809,1406:11,9,3,12 +chrX 2610367 . T . . END=2610401 GT:DP:GQ:MIN_DP:PL 0/0:33:72:33:0,72,1080 +chrX 2610402 . A . . END=2610402 GT:DP:GQ:MIN_DP:PL 0/0:35:5:35:0,5,560 +chrX 2610403 . C . . END=2610444 GT:DP:GQ:MIN_DP:PL 0/0:38:82:38:0,82,1016 +chrX 2610445 . GCCTCTCTCTCA G, 59.60 . AS_QUALapprox=|67|0;AS_VarDP=17|3|0;BaseQRankSum=0.438;DP=37;MQRankSum=0.000;QUALapprox=67;RAW_GT_COUNT=0,1,0;RAW_MQandDP=133200,37;ReadPosRankSum=2.409;VarDP=20 GT:AD:DP:GQ:PL:SB 0/1:17,3,0:20:67:67,0,682,118,693,811:9,8,0,3 +chrX 2610457 . C . . END=2610475 GT:DP:GQ:MIN_DP:PL 0/0:32:63:32:0,63,934 +chrX 2610476 . T C,TTTCTCTCTCTCCCCCTC, 153.60 . AS_QUALapprox=|0|161|0;AS_VarDP=5|0|4|0;BaseQRankSum=-0.967;DP=36;MQRankSum=0.000;QUALapprox=161;RAW_GT_COUNT=0,1,0;RAW_MQandDP=129600,36;ReadPosRankSum=0.464;VarDP=9 GT:AD:DP:GQ:PL:SB 0/2:5,0,4,0:9:99:161,162,804,0,220,725,225,636,519,882:2,3,0,4 +chrX 2610477 . T . . END=2610548 GT:DP:GQ:MIN_DP:PL 0/0:25:34:23:0,34,506 +chrX 2610549 . C CCT, 847.03 . AS_QUALapprox=|861|0;AS_VarDP=0|22|0;DP=25;QUALapprox=861;RAW_GT_COUNT=0,0,1;RAW_MQandDP=87424,25;VarDP=22 GT:AD:DP:GQ:PL:SB 1/1:0,22,0:22:66:861,66,0,861,66,861:0,0,5,17 +chrX 2610550 . C . . END=2610659 GT:DP:GQ:MIN_DP:PL 0/0:36:34:31:0,34,888 +chrX 2610660 . A . . END=2610660 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,835 +chrX 2610661 . C . . END=2610761 GT:DP:GQ:MIN_DP:PL 0/0:43:57:43:0,57,982 +chrX 2610762 . A . . END=2610762 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,622 +chrX 2610763 . T . . END=2611191 GT:DP:GQ:MIN_DP:PL 0/0:55:47:55:0,47,1072 +chrX 2611192 . A . . END=2611192 GT:DP:GQ:MIN_DP:PL 0/0:59:0:59:0,0,1456 +chrX 2611193 . T . . END=2611200 GT:DP:GQ:MIN_DP:PL 0/0:65:28:62:0,28,1678 +chrX 2611201 . A . . END=2611201 GT:DP:GQ:MIN_DP:PL 0/0:65:11:65:0,11,1580 +chrX 2611202 . T . . END=2611202 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 2611203 . A AT, 435.60 . AS_QUALapprox=|443|0;AS_VarDP=10|19|0;BaseQRankSum=0.279;DP=37;MQRankSum=-0.653;QUALapprox=443;RAW_GT_COUNT=0,1,0;RAW_MQandDP=131200,37;ReadPosRankSum=0.734;VarDP=29 GT:AD:DP:GQ:PL:SB 0/1:10,19,0:29:99:443,0,195,473,252,725:6,4,12,7 +chrX 2611204 . T . . END=2611235 GT:DP:GQ:MIN_DP:PL 0/0:27:36:26:0,36,540 +chrX 2611236 . TG T, 387.60 . AS_QUALapprox=|395|0;AS_VarDP=8|17|0;BaseQRankSum=0.195;DP=27;MQRankSum=-1.187;QUALapprox=395;RAW_GT_COUNT=0,1,0;RAW_MQandDP=92964,27;ReadPosRankSum=1.224;VarDP=25 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:8,17,0:25:99:0|1:2611236_TG_T:395,0,207,419,257,676:2611236:6,2,10,7 +chrX 2611238 . T . . END=2611238 GT:DP:GQ:MIN_DP:PL 0/0:26:36:26:0,36,540 +chrX 2611239 . TTTTTTTG T, 388.60 . AS_QUALapprox=|396|0;AS_VarDP=8|17|0;BaseQRankSum=1.032;DP=29;MQRankSum=-1.187;QUALapprox=396;RAW_GT_COUNT=0,1,0;RAW_MQandDP=100164,29;ReadPosRankSum=1.113;VarDP=25 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:8,17,0:25:99:0|1:2611236_TG_T:396,0,207,420,257,676:2611236:6,2,10,7 +chrX 2611246 . G *,T, 138.71 . AS_QUALapprox=|0|496|0;AS_VarDP=0|17|5|0;DP=27;QUALapprox=898;RAW_GT_COUNT=0,0,1;RAW_MQandDP=92964,27;VarDP=22 GT:AD:DP:GQ:PL:SB 1/2:0,17,5,0:22:99:898,149,147,465,0,402,772,182,461,757:0,0,14,8 +chrX 2611247 . T . . END=2611261 GT:DP:GQ:MIN_DP:PL 0/0:53:75:53:0,75,1215 +chrX 2611262 . G . . END=2611265 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,769 +chrX 2611266 . T . . END=2611266 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 2611267 . G . . END=2611267 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,1236 +chrX 2611268 . T . . END=2611360 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,107,1459 +chrX 2611361 . T C, 2153.06 . AS_QUALapprox=|2167|0;AS_VarDP=0|69|0;DP=72;QUALapprox=2167;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;VarDP=69 GT:AD:DP:GQ:PL:SB 1/1:0,69,0:69:99:2167,206,0,2167,206,2167:0,0,31,38 +chrX 2611362 . G . . END=2612104 GT:DP:GQ:MIN_DP:PL 0/0:64:90:64:0,90,1410 +chrX 2612105 . G A, 617.64 . AS_QUALapprox=|625|0;AS_VarDP=29|24|0;BaseQRankSum=0.898;DP=57;MQRankSum=0.000;QUALapprox=625;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=0.706;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:29,24,0:53:99:625,0,744,712,816,1528:16,13,15,9 +chrX 2612106 . A . . END=2612326 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 2612327 . A G, 717.64 . AS_QUALapprox=|725|0;AS_VarDP=33|28|0;BaseQRankSum=-1.387;DP=63;MQRankSum=0.000;QUALapprox=725;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=-0.688;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:33,28,0:61:99:725,0,929,824,1013,1837:15,18,11,17 +chrX 2612328 . T . . END=2612887 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,109,1619 +chrX 2612888 . G C, 1525.06 . AS_QUALapprox=|1539|0;AS_VarDP=0|46|0;DP=48;QUALapprox=1539;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172009,48;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1539,138,0,1539,138,1539:0,0,23,23 +chrX 2612889 . G . . END=2613603 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,100,1471 +chrX 2613604 . C G, 820.64 . AS_QUALapprox=|828|0;AS_VarDP=28|30|0;BaseQRankSum=-0.752;DP=61;MQRankSum=0.000;QUALapprox=828;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-1.510;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:28,30,0:58:99:828,0,779,912,869,1781:12,16,10,20 +chrX 2613605 . T . . END=2614563 GT:DP:GQ:MIN_DP:PL 0/0:53:62:48:0,62,1152 +chrX 2614564 . GA G, 243.60 . AS_QUALapprox=|251|0;AS_VarDP=24|15|0;BaseQRankSum=1.141;DP=54;MQRankSum=0.000;QUALapprox=251;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=-1.191;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:24,15,0:39:99:251,0,484,323,529,852:11,13,12,3 +chrX 2614566 . A . . END=2614729 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 2614730 . C T, 670.64 . AS_QUALapprox=|678|0;AS_VarDP=31|26|0;BaseQRankSum=1.592;DP=57;MQRankSum=0.000;QUALapprox=678;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=0.136;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:31,26,0:57:99:678,0,796,771,874,1645:18,13,14,12 +chrX 2614731 . C . . END=2614901 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 2614902 . G A, 884.64 . AS_QUALapprox=|892|0;AS_VarDP=34|34|0;BaseQRankSum=-0.668;DP=72;MQRankSum=0.000;QUALapprox=892;RAW_GT_COUNT=0,1,0;RAW_MQandDP=259200,72;ReadPosRankSum=-0.497;VarDP=68 GT:AD:DP:GQ:PL:SB 0/1:34,34,0:68:99:892,0,927,995,1028,2023:14,20,17,17 +chrX 2614903 . G . . END=2615056 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 2615057 . A G, 843.64 . AS_QUALapprox=|851|0;AS_VarDP=27|30|0;BaseQRankSum=2.555;DP=57;MQRankSum=0.000;QUALapprox=851;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-1.903;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:27,30,0:57:99:851,0,662,932,752,1684:14,13,16,14 +chrX 2615058 . T . . END=2615409 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,118,1800 +chrX 2615410 . A C, 1906.06 . AS_QUALapprox=|1920|0;AS_VarDP=0|58|0;DP=59;QUALapprox=1920;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=58 GT:AD:DP:GQ:PL:SB 1/1:0,58,0:58:99:1920,174,0,1920,174,1920:0,0,31,27 +chrX 2615411 . T . . END=2615600 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,115,1608 +chrX 2615601 . C T, 591.64 . AS_QUALapprox=|599|0;AS_VarDP=29|22|0;BaseQRankSum=0.796;DP=52;MQRankSum=0.000;QUALapprox=599;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=-2.036;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:29,22,0:51:99:599,0,808,686,874,1560:15,14,9,13 +chrX 2615602 . T . . END=2615662 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,100,1363 +chrX 2615663 . C T, 1445.06 . AS_QUALapprox=|1459|0;AS_VarDP=0|44|0;DP=45;QUALapprox=1459;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162000,45;VarDP=44 GT:AD:DP:GQ:PL:SB 1/1:0,44,0:44:99:1459,132,0,1459,132,1459:0,0,24,20 +chrX 2615664 . G . . END=2615839 GT:DP:GQ:MIN_DP:PL 0/0:51:98:51:0,98,1480 +chrX 2615840 . C G, 763.64 . AS_QUALapprox=|771|0;AS_VarDP=26|30|0;BaseQRankSum=0.610;DP=58;MQRankSum=0.000;QUALapprox=771;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=1.693;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:26,30,0:56:99:771,0,587,848,676,1524:18,8,15,15 +chrX 2615841 . C . . END=2616360 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,116,1484 +chrX 2616361 . G A, 1980.06 . AS_QUALapprox=|1994|0;AS_VarDP=1|62|0;BaseQRankSum=2.334;DP=65;MQRankSum=0.000;QUALapprox=1994;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;ReadPosRankSum=-1.210;VarDP=63 GT:AD:DP:GQ:PL:SB 1/1:1,62,0:63:99:1994,179,0,1997,185,2004:0,1,23,39 +chrX 2616362 . T . . END=2616557 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 2616558 . ATGTG A, 994.60 . AS_QUALapprox=|1002|0;AS_VarDP=16|25|0;BaseQRankSum=0.611;DP=43;MQRankSum=0.000;QUALapprox=1002;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154800,43;ReadPosRankSum=-0.695;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:16,25,0:41:99:1002,0,596,1050,672,1722:7,9,15,10 +chrX 2616563 . T . . END=2616798 GT:DP:GQ:MIN_DP:PL 0/0:51:89:51:0,89,1405 +chrX 2616799 . T A, 506.64 . AS_QUALapprox=|514|0;AS_VarDP=22|20|0;BaseQRankSum=-1.016;DP=43;MQRankSum=0.000;QUALapprox=514;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154800,43;ReadPosRankSum=-1.185;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:22,20,0:42:99:514,0,619,580,678,1258:6,16,14,6 +chrX 2616800 . C . . END=2617403 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,102,1428 +chrX 2617404 . G A, 2060.06 . AS_QUALapprox=|2074|0;AS_VarDP=0|64|0;DP=69;QUALapprox=2074;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=64 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:2074,192,0,2074,192,2074:0,0,28,36 +chrX 2617405 . A . . END=2617485 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 2617486 . A C, 1899.06 . AS_QUALapprox=|1913|0;AS_VarDP=0|63|0;DP=64;QUALapprox=1913;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=63 GT:AD:DP:GQ:PL:SB 1/1:0,63,0:63:99:1913,187,0,1913,187,1913:0,0,29,34 +chrX 2617487 . G . . END=2617562 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 2617563 . A G, 1925.06 . AS_QUALapprox=|1939|0;AS_VarDP=0|60|0;DP=63;QUALapprox=1939;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:1939,179,0,1939,179,1939:0,0,26,34 +chrX 2617564 . C . . END=2618135 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,114,1438 +chrX 2618136 . C G, 1702.06 . AS_QUALapprox=|1716|0;AS_VarDP=0|54|0;DP=55;QUALapprox=1716;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:1716,161,0,1716,161,1716:0,0,17,37 +chrX 2618137 . G . . END=2618501 GT:DP:GQ:MIN_DP:PL 0/0:60:96:60:0,96,1440 +chrX 2618502 . TC T, 926.60 . AS_QUALapprox=|934|0;AS_VarDP=32|26|0;BaseQRankSum=-0.850;DP=61;MQRankSum=0.000;QUALapprox=934;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-0.641;VarDP=58 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:32,26,0:58:99:0|1:2618502_TC_T:934,0,1179,1030,1257,2287:2618502:20,12,10,16 +chrX 2618504 . T . . END=2618505 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 2618506 . TC T, 926.60 . AS_QUALapprox=|934|0;AS_VarDP=32|26|0;BaseQRankSum=-1.518;DP=61;MQRankSum=0.000;QUALapprox=934;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-0.430;VarDP=58 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:32,26,0:58:99:0|1:2618502_TC_T:934,0,1179,1030,1257,2287:2618502:20,12,10,16 +chrX 2618508 . T . . END=2618571 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 2618572 . C T, 1523.06 . AS_QUALapprox=|1537|0;AS_VarDP=0|50|0;DP=54;QUALapprox=1537;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1537,149,0,1537,149,1537:0,0,27,23 +chrX 2618573 . G . . END=2618895 GT:DP:GQ:MIN_DP:PL 0/0:54:87:54:0,87,1177 +chrX 2618896 . A T, 923.64 . AS_QUALapprox=|931|0;AS_VarDP=26|34|0;BaseQRankSum=-0.118;DP=61;MQRankSum=0.000;QUALapprox=931;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=0.537;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:26,34,0:60:99:931,0,673,1009,775,1785:15,11,18,16 +chrX 2618897 . G . . END=2619606 GT:DP:GQ:MIN_DP:PL 0/0:64:91:64:0,91,1319 +chrX 2619607 . T C, 1914.06 . AS_QUALapprox=|1928|0;AS_VarDP=0|60|0;DP=61;QUALapprox=1928;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:1928,180,0,1928,180,1928:0,0,24,36 +chrX 2619608 . T . . END=2620093 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 2620094 . TTTA T, 2282.03 . AS_QUALapprox=|2296|0;AS_VarDP=0|51|0;DP=67;QUALapprox=2296;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:2296,154,0,2296,154,2296:0,0,27,24 +chrX 2620098 . T . . END=2621123 GT:DP:GQ:MIN_DP:PL 0/0:65:76:65:0,76,1728 +chrX 2621124 . C G, 591.64 . AS_QUALapprox=|599|0;AS_VarDP=36|26|0;BaseQRankSum=-0.931;DP=64;MQRankSum=0.000;QUALapprox=599;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=-2.012;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:36,26,0:62:99:599,0,951,706,1028,1734:20,16,13,13 +chrX 2621125 . T . . END=2621387 GT:DP:GQ:MIN_DP:PL 0/0:58:35:56:0,35,1463 +chrX 2621388 . T TTATCTC, 2134.03 . AS_QUALapprox=|2148|0;AS_VarDP=0|49|0;DP=53;QUALapprox=2148;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:2148,147,0,2149,147,2149:0,0,28,21 +chrX 2621389 . T . . END=2621392 GT:DP:GQ:MIN_DP:PL 0/0:59:20:58:0,20,1517 +chrX 2621393 . C . . END=2621394 GT:DP:GQ:MIN_DP:PL 0/0:58:0:58:0,0,1499 +chrX 2621395 . A . . END=2622170 GT:DP:GQ:MIN_DP:PL 0/0:61:38:59:0,38,1261 +chrX 2622171 . CA C,CAA, 705.02 . AS_QUALapprox=|419|214|0;AS_VarDP=0|21|13|0;DP=58;QUALapprox=722;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=34 GT:AD:DP:GQ:PL:SB 1/2:0,21,13,0:34:99:722,303,401,508,0,623,793,394,604,929:0,0,13,21 +chrX 2622173 . A . . END=2622224 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,119,1447 +chrX 2622225 . A T, 952.64 . AS_QUALapprox=|960|0;AS_VarDP=23|34|0;BaseQRankSum=-1.892;DP=57;MQRankSum=0.000;QUALapprox=960;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-1.017;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:23,34,0:57:99:960,0,628,1030,730,1760:10,13,19,15 +chrX 2622226 . C . . END=2622630 GT:DP:GQ:MIN_DP:PL 0/0:54:97:54:0,97,1359 +chrX 2622631 . C T, 1598.06 . AS_QUALapprox=|1612|0;AS_VarDP=0|50|0;DP=51;QUALapprox=1612;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1612,149,0,1612,149,1612:0,0,24,26 +chrX 2622632 . C . . END=2622825 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 2622826 . T A, 791.64 . AS_QUALapprox=|799|0;AS_VarDP=38|30|0;BaseQRankSum=1.380;DP=70;MQRankSum=0.000;QUALapprox=799;RAW_GT_COUNT=0,1,0;RAW_MQandDP=252000,70;ReadPosRankSum=0.093;VarDP=68 GT:AD:DP:GQ:PL:SB 0/1:38,30,0:68:99:799,0,986,913,1077,1989:17,21,16,14 +chrX 2622827 . A C, 2527.06 . AS_QUALapprox=|2541|0;AS_VarDP=0|68|0;DP=70;QUALapprox=2541;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;VarDP=68 GT:AD:DP:GQ:PL:SB 1/1:0,68,0:68:99:2541,204,0,2541,204,2541:0,0,33,35 +chrX 2622828 . A . . END=2622901 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 2622902 . G A, 1040.64 . AS_QUALapprox=|1048|0;AS_VarDP=29|40|0;BaseQRankSum=-0.652;DP=69;MQRankSum=0.000;QUALapprox=1048;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=-0.809;VarDP=69 GT:AD:DP:GQ:PL:SB 0/1:29,40,0:69:99:1048,0,751,1136,870,2006:14,15,25,15 +chrX 2622903 . T . . END=2622961 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,110,1800 +chrX 2622962 . T C, 2128.06 . AS_QUALapprox=|2142|0;AS_VarDP=0|70|0;DP=72;QUALapprox=2142;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;VarDP=70 GT:AD:DP:GQ:PL:SB 1/1:0,70,0:70:99:2142,209,0,2142,209,2142:0,0,33,37 +chrX 2622963 . G . . END=2623691 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,105,1380 +chrX 2623692 . GA G, 3150.03 . AS_QUALapprox=|3164|0;AS_VarDP=0|71|0;DP=73;QUALapprox=3164;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;VarDP=71 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,71,0:71:99:0|1:2623692_GA_G:3164,214,0,3164,214,3164:2623692:0,0,40,31 +chrX 2623694 . T C, 3150.06 . AS_QUALapprox=|3164|0;AS_VarDP=0|71|0;DP=72;QUALapprox=3164;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;VarDP=71 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,71,0:71:99:0|1:2623692_GA_G:3164,214,0,3164,214,3164:2623692:0,0,40,31 +chrX 2623695 . T . . END=2624180 GT:DP:GQ:MIN_DP:PL 0/0:60:92:60:0,92,1529 +chrX 2624181 . T C, 655.64 . AS_QUALapprox=|663|0;AS_VarDP=30|27|0;BaseQRankSum=-0.628;DP=59;MQRankSum=0.000;QUALapprox=663;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-1.943;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:30,27,0:57:99:663,0,808,753,888,1641:15,15,16,11 +chrX 2624182 . T . . END=2624370 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,113,1800 +chrX 2624371 . TA T, 638.60 . AS_QUALapprox=|646|0;AS_VarDP=28|27|0;BaseQRankSum=1.754;DP=65;MQRankSum=0.000;QUALapprox=646;RAW_GT_COUNT=0,1,0;RAW_MQandDP=233316,65;ReadPosRankSum=0.497;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:28,27,0:55:99:646,0,644,730,725,1455:7,21,11,16 +chrX 2624373 . A . . END=2624424 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 2624425 . CTT C,CT, 1269.02 . AS_QUALapprox=|845|758|0;AS_VarDP=0|26|20|0;DP=63;QUALapprox=1286;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223750,63;VarDP=46 GT:AD:DP:GQ:PL:SB 1/2:0,26,20,0:46:99:1286,441,476,655,0,528,1218,504,648,1221:0,0,23,23 +chrX 2624428 . T . . END=2624972 GT:DP:GQ:MIN_DP:PL 0/0:65:45:65:0,45,1624 +chrX 2624973 . C CT, 410.60 . AS_QUALapprox=|418|0;AS_VarDP=18|25|0;BaseQRankSum=0.033;DP=67;MQRankSum=-0.801;QUALapprox=418;RAW_GT_COUNT=0,1,0;RAW_MQandDP=239200,67;ReadPosRankSum=0.554;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:18,25,0:43:99:418,0,311,472,385,856:6,12,15,10 +chrX 2624974 . T . . END=2624989 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,111,1665 +chrX 2624990 . G . . END=2624991 GT:DP:GQ:MIN_DP:PL 0/0:55:0:55:0,0,1288 +chrX 2624992 . G . . END=2625188 GT:DP:GQ:MIN_DP:PL 0/0:49:49:49:0,49,1157 +chrX 2625189 . C T, 1807.06 . AS_QUALapprox=|1821|0;AS_VarDP=0|53|0;DP=55;QUALapprox=1821;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1821,159,0,1821,159,1821:0,0,29,24 +chrX 2625190 . G . . END=2625369 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 2625370 . T C, 1079.64 . AS_QUALapprox=|1087|0;AS_VarDP=34|43|0;BaseQRankSum=-1.534;DP=82;MQRankSum=0.000;QUALapprox=1087;RAW_GT_COUNT=0,1,0;RAW_MQandDP=295200,82;ReadPosRankSum=-1.185;VarDP=77 GT:AD:DP:GQ:PL:SB 0/1:34,43,0:77:99:1087,0,869,1189,997,2186:14,20,19,24 +chrX 2625371 . C . . END=2625506 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,120,1800 +chrX 2625507 . A AT, 2096.03 . AS_QUALapprox=|2110|0;AS_VarDP=0|67|0;DP=72;QUALapprox=2110;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;VarDP=67 GT:AD:DP:GQ:PL:SB 1/1:0,67,0:67:99:2110,201,0,2110,201,2110:0,0,31,36 +chrX 2625508 . T . . END=2625746 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,115,1568 +chrX 2625747 . C T, 1826.06 . AS_QUALapprox=|1840|0;AS_VarDP=0|55|0;DP=56;QUALapprox=1840;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1840,165,0,1840,165,1840:0,0,25,30 +chrX 2625748 . T . . END=2625852 GT:DP:GQ:MIN_DP:PL 0/0:58:38:56:0,38,1439 +chrX 2625853 . C . . END=2625853 GT:DP:GQ:MIN_DP:PL 0/0:57:0:57:0,0,1504 +chrX 2625854 . T . . END=2625854 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 2625855 . T TTATATA, 2110.03 . AS_QUALapprox=|2124|0;AS_VarDP=0|48|0;DP=54;QUALapprox=2124;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=48 GT:AD:DP:GQ:PL:SB 1/1:0,48,0:48:99:2124,144,0,2124,144,2124:0,0,26,22 +chrX 2625856 . T . . END=2625910 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,116,1514 +chrX 2625911 . C T, 1620.06 . AS_QUALapprox=|1634|0;AS_VarDP=0|48|0;DP=49;QUALapprox=1634;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=48 GT:AD:DP:GQ:PL:SB 1/1:0,48,0:48:99:1634,144,0,1634,144,1634:0,0,26,22 +chrX 2625912 . G . . END=2626204 GT:DP:GQ:MIN_DP:PL 0/0:54:97:54:0,97,1181 +chrX 2626205 . C T, 512.64 . AS_QUALapprox=|520|0;AS_VarDP=28|20|0;BaseQRankSum=-0.790;DP=50;MQRankSum=0.000;QUALapprox=520;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=0.126;VarDP=48 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,20,0:48:99:0|1:2626205_C_T:520,0,1064,604,1124,1728:2626205:15,13,12,8 +chrX 2626206 . T . . END=2626226 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,119,1549 +chrX 2626227 . G T, 794.64 . AS_QUALapprox=|802|0;AS_VarDP=19|28|0;BaseQRankSum=-0.628;DP=48;MQRankSum=0.000;QUALapprox=802;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=-0.282;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:19,28,0:47:99:1|0:2626205_C_T:802,0,693,859,777,1636:2626205:11,8,16,12 +chrX 2626228 . T . . END=2626916 GT:DP:GQ:MIN_DP:PL 0/0:58:98:58:0,98,1449 +chrX 2626917 . G A, 1608.06 . AS_QUALapprox=|1622|0;AS_VarDP=0|51|0;DP=53;QUALapprox=1622;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1622,153,0,1622,153,1622:0,0,24,27 +chrX 2626918 . T . . END=2627130 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,117,1534 +chrX 2627131 . C T, 584.64 . AS_QUALapprox=|592|0;AS_VarDP=25|21|0;BaseQRankSum=1.649;DP=47;MQRankSum=0.000;QUALapprox=592;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=0.210;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:25,21,0:46:99:592,0,686,667,749,1416:11,14,13,8 +chrX 2627132 . G . . END=2627163 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 2627164 . GT G, 841.60 . AS_QUALapprox=|849|0;AS_VarDP=30|23|0;BaseQRankSum=-0.012;DP=56;MQRankSum=0.000;QUALapprox=849;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=0.398;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:30,23,0:53:99:0|1:2627164_GT_G:849,0,1165,939,1234,2173:2627164:13,17,13,10 +chrX 2627166 . T . . END=2627166 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,120,1800 +chrX 2627167 . G C, 841.64 . AS_QUALapprox=|849|0;AS_VarDP=30|23|0;BaseQRankSum=0.451;DP=57;MQRankSum=0.000;QUALapprox=849;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=0.260;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:30,23,0:53:99:0|1:2627164_GT_G:849,0,1165,939,1234,2173:2627164:13,17,13,10 +chrX 2627168 . C . . END=2627298 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 2627299 . GA G, 652.60 . AS_QUALapprox=|660|0;AS_VarDP=33|30|0;BaseQRankSum=-1.156;DP=67;MQRankSum=0.000;QUALapprox=660;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=-0.475;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:33,30,0:63:99:660,0,737,759,827,1586:26,7,14,16 +chrX 2627301 . A . . END=2628106 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1569 +chrX 2628107 . C G, 1154.64 . AS_QUALapprox=|1162|0;AS_VarDP=29|42|0;BaseQRankSum=-0.766;DP=72;MQRankSum=0.000;QUALapprox=1162;RAW_GT_COUNT=0,1,0;RAW_MQandDP=259200,72;ReadPosRankSum=1.627;VarDP=71 GT:AD:DP:GQ:PL:SB 0/1:29,42,0:71:99:1162,0,763,1249,889,2138:14,15,18,24 +chrX 2628108 . C . . END=2628263 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,113,1729 +chrX 2628264 . T G, 899.64 . AS_QUALapprox=|907|0;AS_VarDP=23|32|0;BaseQRankSum=1.968;DP=55;MQRankSum=0.000;QUALapprox=907;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-0.154;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,32,0:55:99:0|1:2628264_T_G:907,0,554,976,650,1626:2628264:10,13,17,15 +chrX 2628265 . A . . END=2628279 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 2628280 . A G, 2074.06 . AS_QUALapprox=|2088|0;AS_VarDP=0|53|0;DP=57;QUALapprox=2088;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,53,0:53:99:0|1:2628264_T_G:2088,159,0,2088,159,2088:2628264:0,0,26,27 +chrX 2628281 . T . . END=2629120 GT:DP:GQ:MIN_DP:PL 0/0:61:66:61:0,66,1268 +chrX 2629121 . A . . END=2629121 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,1187 +chrX 2629122 . G . . END=2629832 GT:DP:GQ:MIN_DP:PL 0/0:58:81:58:0,81,1364 +chrX 2629833 . C . . END=2629833 GT:DP:GQ:MIN_DP:PL 0/0:69:0:69:0,0,1703 +chrX 2629834 . T . . END=2629835 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,120,1800 +chrX 2629836 . C . . END=2629836 GT:DP:GQ:MIN_DP:PL 0/0:71:0:71:0,0,1592 +chrX 2629837 . C . . END=2629846 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,120,1800 +chrX 2629847 . G . . END=2629847 GT:DP:GQ:MIN_DP:PL 0/0:70:0:70:0,0,1538 +chrX 2629848 . G . . END=2629849 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 2629850 . A . . END=2629850 GT:DP:GQ:MIN_DP:PL 0/0:72:0:72:0,0,1527 +chrX 2629851 . C . . END=2629852 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 2629853 . T . . END=2629853 GT:DP:GQ:MIN_DP:PL 0/0:69:0:69:0,0,1435 +chrX 2629854 . T . . END=2629857 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 2629858 . A . . END=2629858 GT:DP:GQ:MIN_DP:PL 0/0:68:0:68:0,0,1449 +chrX 2629859 . T . . END=2629874 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 2629875 . T . . END=2629876 GT:DP:GQ:MIN_DP:PL 0/0:77:0:77:0,0,1249 +chrX 2629877 . G . . END=2629906 GT:DP:GQ:MIN_DP:PL 0/0:76:99:76:0,120,1800 +chrX 2629907 . T . . END=2629908 GT:DP:GQ:MIN_DP:PL 0/0:80:0:80:0,0,982 +chrX 2629909 . A . . END=2629941 GT:DP:GQ:MIN_DP:PL 0/0:80:99:80:0,120,1800 +chrX 2629942 . C . . END=2629942 GT:DP:GQ:MIN_DP:PL 0/0:81:0:81:0,0,876 +chrX 2629943 . A . . END=2629948 GT:DP:GQ:MIN_DP:PL 0/0:81:99:81:0,120,1800 +chrX 2629949 . T . . END=2629949 GT:DP:GQ:MIN_DP:PL 0/0:82:0:82:0,0,963 +chrX 2629950 . C . . END=2629974 GT:DP:GQ:MIN_DP:PL 0/0:80:99:80:0,120,1800 +chrX 2629975 . C . . END=2629976 GT:DP:GQ:MIN_DP:PL 0/0:80:0:80:0,0,967 +chrX 2629977 . T . . END=2629978 GT:DP:GQ:MIN_DP:PL 0/0:78:99:78:0,120,1800 +chrX 2629979 . C . . END=2629979 GT:DP:GQ:MIN_DP:PL 0/0:79:0:79:0,0,1025 +chrX 2629980 . T . . END=2629998 GT:DP:GQ:MIN_DP:PL 0/0:79:99:79:0,120,1800 +chrX 2629999 . G . . END=2629999 GT:DP:GQ:MIN_DP:PL 0/0:74:0:74:0,0,1020 +chrX 2630000 . A . . END=2630041 GT:DP:GQ:MIN_DP:PL 0/0:74:99:74:0,120,1800 +chrX 2630042 . A G, 1408.06 . AS_QUALapprox=|1422|0;AS_VarDP=2|49|0;BaseQRankSum=-0.757;DP=53;MQRankSum=4.561;QUALapprox=1422;RAW_GT_COUNT=0,0,1;RAW_MQandDP=181299,53;ReadPosRankSum=-0.073;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:2,49,0:51:63:1422,63,0,1428,147,1512:0,2,19,30 +chrX 2630043 . T . . END=2630072 GT:DP:GQ:MIN_DP:PL 0/0:47:25:43:0,25,1196 +chrX 2630073 . T . . END=2630074 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,1105 +chrX 2630075 . G . . END=2630080 GT:DP:GQ:MIN_DP:PL 0/0:45:22:44:0,22,1191 +chrX 2630081 . T . . END=2630081 GT:DP:GQ:MIN_DP:PL 0/0:41:5:41:0,5,1138 +chrX 2630082 . G . . END=2630107 GT:DP:GQ:MIN_DP:PL 0/0:46:22:43:0,22,1169 +chrX 2630108 . T . . END=2630108 GT:DP:GQ:MIN_DP:PL 0/0:43:10:43:0,10,1126 +chrX 2630109 . T . . END=2630109 GT:DP:GQ:MIN_DP:PL 0/0:45:31:45:0,31,1306 +chrX 2630110 . G . . END=2630111 GT:DP:GQ:MIN_DP:PL 0/0:44:11:44:0,11,1192 +chrX 2630112 . G . . END=2630115 GT:DP:GQ:MIN_DP:PL 0/0:42:22:42:0,22,1141 +chrX 2630116 . C . . END=2630116 GT:DP:GQ:MIN_DP:PL 0/0:41:19:41:0,19,1126 +chrX 2630117 . T . . END=2630119 GT:DP:GQ:MIN_DP:PL 0/0:42:22:42:0,22,1201 +chrX 2630120 . C . . END=2630124 GT:DP:GQ:MIN_DP:PL 0/0:41:13:41:0,13,1087 +chrX 2630125 . T . . END=2630125 GT:DP:GQ:MIN_DP:PL 0/0:42:22:42:0,22,1201 +chrX 2630126 . C . . END=2630127 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,1087 +chrX 2630128 . T . . END=2630129 GT:DP:GQ:MIN_DP:PL 0/0:42:22:42:0,22,1201 +chrX 2630130 . G . . END=2630135 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,1052 +chrX 2630136 . T . . END=2630165 GT:DP:GQ:MIN_DP:PL 0/0:47:33:46:0,33,1219 +chrX 2630166 . A . . END=2630166 GT:DP:GQ:MIN_DP:PL 0/0:52:0:52:0,0,1239 +chrX 2630167 . G . . END=2630191 GT:DP:GQ:MIN_DP:PL 0/0:51:31:45:0,31,1205 +chrX 2630192 . C . . END=2630192 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,1118 +chrX 2630193 . T . . END=2630194 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 2630195 . A . . END=2630195 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1164 +chrX 2630196 . C . . END=2630214 GT:DP:GQ:MIN_DP:PL 0/0:62:28:58:0,28,1678 +chrX 2630215 . C . . END=2630216 GT:DP:GQ:MIN_DP:PL 0/0:67:0:67:0,0,1648 +chrX 2630217 . G . . END=2630243 GT:DP:GQ:MIN_DP:PL 0/0:82:99:82:0,120,1800 +chrX 2630244 . G . . END=2630244 GT:DP:GQ:MIN_DP:PL 0/0:81:0:81:0,0,1174 +chrX 2630245 . G . . END=2630249 GT:DP:GQ:MIN_DP:PL 0/0:82:99:82:0,120,1800 +chrX 2630250 . T . . END=2630250 GT:DP:GQ:MIN_DP:PL 0/0:83:0:83:0,0,1912 +chrX 2630251 . T . . END=2630253 GT:DP:GQ:MIN_DP:PL 0/0:82:99:82:0,120,1800 +chrX 2630254 . C . . END=2630254 GT:DP:GQ:MIN_DP:PL 0/0:82:0:82:0,0,219 +chrX 2630255 . A . . END=2630268 GT:DP:GQ:MIN_DP:PL 0/0:82:99:82:0,120,1800 +chrX 2630269 . A . . END=2630269 GT:DP:GQ:MIN_DP:PL 0/0:83:0:83:0,0,1156 +chrX 2630270 . T . . END=2630312 GT:DP:GQ:MIN_DP:PL 0/0:80:99:80:0,120,1800 +chrX 2630313 . G C, 356.64 . AS_QUALapprox=|364|0;AS_VarDP=54|13|0;BaseQRankSum=-0.161;DP=67;MQRankSum=-0.152;QUALapprox=364;RAW_GT_COUNT=0,1,0;RAW_MQandDP=146478,67;ReadPosRankSum=2.324;VarDP=67 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:54,13,0:67:99:0|1:2630313_G_C:364,0,1837,526,1876,2402:2630313:33,21,1,12 +chrX 2630314 . C . . END=2630331 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 2630332 . T G, 369.64 . AS_QUALapprox=|377|0;AS_VarDP=42|12|0;BaseQRankSum=1.679;DP=54;MQRankSum=-2.545;QUALapprox=377;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151568,54;ReadPosRankSum=0.695;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:42,12,0:54:99:0|1:2630313_G_C:377,0,1726,504,1762,2266:2630313:25,17,0,12 +chrX 2630333 . A . . END=2630337 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 2630338 . A G, 381.64 . AS_QUALapprox=|389|0;AS_VarDP=38|12|0;BaseQRankSum=1.879;DP=50;MQRankSum=-2.348;QUALapprox=389;RAW_GT_COUNT=0,1,0;RAW_MQandDP=138743,50;ReadPosRankSum=-0.523;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:38,12,0:50:99:0|1:2630313_G_C:389,0,1558,504,1594,2098:2630313:24,14,0,12 +chrX 2630339 . C . . END=2630349 GT:DP:GQ:MIN_DP:PL 0/0:47:92:47:0,92,1505 +chrX 2630350 . G C, 346.64 . AS_QUALapprox=|354|0;AS_VarDP=36|11|0;BaseQRankSum=0.588;DP=47;MQRankSum=-2.232;QUALapprox=354;RAW_GT_COUNT=0,1,0;RAW_MQandDP=125837,47;ReadPosRankSum=-1.993;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:36,11,0:47:99:0|1:2630313_G_C:354,0,1477,462,1510,1972:2630313:22,14,0,11 +chrX 2630351 . G T, 307.64 . AS_QUALapprox=|315|0;AS_VarDP=35|10|0;BaseQRankSum=0.803;DP=45;MQRankSum=-2.326;QUALapprox=315;RAW_GT_COUNT=0,1,0;RAW_MQandDP=118873,45;ReadPosRankSum=-2.076;VarDP=45 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:35,10,0:45:99:0|1:2630313_G_C:315,0,1440,420,1470,1890:2630313:21,14,0,10 +chrX 2630352 . T . . END=2630358 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,108,1620 +chrX 2630359 . A C, 271.64 . AS_QUALapprox=|279|0;AS_VarDP=33|9|0;BaseQRankSum=1.335;DP=42;MQRankSum=-2.388;QUALapprox=279;RAW_GT_COUNT=0,1,0;RAW_MQandDP=108405,42;ReadPosRankSum=-2.740;VarDP=42 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:33,9,0:42:99:0|1:2630313_G_C:279,0,1359,378,1386,1764:2630313:19,14,0,9 +chrX 2630360 . G . . END=2630369 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,105,1575 +chrX 2630370 . A G, 118.64 . AS_QUALapprox=|126|0;AS_VarDP=42|6|0;BaseQRankSum=1.094;DP=48;MQRankSum=-3.578;QUALapprox=126;RAW_GT_COUNT=0,1,0;RAW_MQandDP=129847,48;ReadPosRankSum=-2.625;VarDP=48 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:42,6,0:48:99:0|1:2630313_G_C:126,0,1705,252,1723,1975:2630313:24,18,0,6 +chrX 2630371 . A . . END=2630379 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,103,1391 +chrX 2630380 . G A, 76.64 . AS_QUALapprox=|84|0;AS_VarDP=42|5|0;BaseQRankSum=0.907;DP=48;MQRankSum=-3.327;QUALapprox=84;RAW_GT_COUNT=0,1,0;RAW_MQandDP=131683,48;ReadPosRankSum=-2.360;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:42,5,0:47:84:0|1:2630313_G_C:84,0,1677,210,1692,1902:2630313:24,18,0,5 +chrX 2630381 . T . . END=2630786 GT:DP:GQ:MIN_DP:PL 0/0:59:94:59:0,94,1369 +chrX 2630787 . ATAG A, 954.60 . AS_QUALapprox=|962|0;AS_VarDP=26|25|0;BaseQRankSum=-2.067;DP=54;MQRankSum=-1.008;QUALapprox=962;RAW_GT_COUNT=0,1,0;RAW_MQandDP=174609,54;ReadPosRankSum=-0.829;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:26,25,0:51:99:962,0,1016,1041,1092,2132:9,17,10,15 +chrX 2630791 . T . . END=2631521 GT:DP:GQ:MIN_DP:PL 0/0:54:95:54:0,95,1343 +chrX 2631522 . A G, 836.64 . AS_QUALapprox=|844|0;AS_VarDP=20|31|0;BaseQRankSum=-0.459;DP=51;MQRankSum=-1.680;QUALapprox=844;RAW_GT_COUNT=0,1,0;RAW_MQandDP=139830,51;ReadPosRankSum=1.284;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:20,31,0:51:99:844,0,500,904,594,1498:12,8,11,20 +chrX 2631523 . T . . END=2631654 GT:DP:GQ:MIN_DP:PL 0/0:52:44:52:0,44,1400 +chrX 2631655 . G . . END=2631655 GT:DP:GQ:MIN_DP:PL 0/0:59:0:59:0,0,1514 +chrX 2631656 . T . . END=2631665 GT:DP:GQ:MIN_DP:PL 0/0:62:38:59:0,38,1693 +chrX 2631666 . A . . END=2631666 GT:DP:GQ:MIN_DP:PL 0/0:60:16:60:0,16,1637 +chrX 2631667 . G . . END=2631749 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 2631750 . T C, 93.64 . AS_QUALapprox=|101|0;AS_VarDP=50|6|0;BaseQRankSum=-3.651;DP=56;MQRankSum=-3.402;QUALapprox=101;RAW_GT_COUNT=0,1,0;RAW_MQandDP=168713,56;ReadPosRankSum=1.310;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:50,6,0:56:99:0|1:2631750_T_C:101,0,2020,251,2038,2290:2631750:23,27,5,1 +chrX 2631751 . T . . END=2631753 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 2631754 . C A, 96.64 . AS_QUALapprox=|104|0;AS_VarDP=49|6|0;BaseQRankSum=-0.462;DP=56;MQRankSum=-3.416;QUALapprox=104;RAW_GT_COUNT=0,1,0;RAW_MQandDP=168832,56;ReadPosRankSum=0.964;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:49,6,0:55:99:0|1:2631750_T_C:104,0,1989,251,2007,2258:2631750:23,26,5,1 +chrX 2631755 . A . . END=2631896 GT:DP:GQ:MIN_DP:PL 0/0:55:36:52:0,36,1315 +chrX 2631897 . GCACTTCCTGGTTCATAGGGACATTGTAA G, 667.02 . AS_QUALapprox=|681|0;AS_VarDP=2|22|0;BaseQRankSum=-0.566;DP=36;MQRankSum=-0.935;QUALapprox=681;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118263,36;ReadPosRankSum=0.575;VarDP=24 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:2,22,0:24:38:0|1:2631897_GCACTTCCTGGTTCATAGGGACATTGTAA_G:681,38,0,686,66,715:2631897:1,1,14,8 +chrX 2631926 . C . . END=2631967 GT:DP:GQ:MIN_DP:PL 0/0:17:0:6:0,0,0 +chrX 2631968 . T . . END=2631968 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,213 +chrX 2631969 . A . . END=2631969 GT:DP:GQ:MIN_DP:PL 0/0:7:0:7:0,0,0 +chrX 2631970 . T . . END=2631970 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,243 +chrX 2631971 . G . . END=2631980 GT:DP:GQ:MIN_DP:PL 0/0:7:0:7:0,0,0 +chrX 2631981 . A . . END=2631982 GT:DP:GQ:MIN_DP:PL 0/0:9:27:9:0,27,292 +chrX 2631983 . C . . END=2631983 GT:DP:GQ:MIN_DP:PL 0/0:9:0:9:0,0,0 +chrX 2631984 . A . . END=2631984 GT:DP:GQ:MIN_DP:PL 0/0:11:33:11:0,33,362 +chrX 2631985 . C . . END=2631986 GT:DP:GQ:MIN_DP:PL 0/0:12:0:12:0,0,0 +chrX 2631987 . T . . END=2631987 GT:DP:GQ:MIN_DP:PL 0/0:12:36:12:0,36,407 +chrX 2631988 . C . . END=2631989 GT:DP:GQ:MIN_DP:PL 0/0:12:0:12:0,0,0 +chrX 2631990 . T . . END=2631990 GT:DP:GQ:MIN_DP:PL 0/0:12:22:12:0,22,368 +chrX 2631991 . A . . END=2631991 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,0 +chrX 2631992 . G . . END=2631994 GT:DP:GQ:MIN_DP:PL 0/0:12:36:12:0,36,397 +chrX 2631995 . T . . END=2631996 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,0 +chrX 2631997 . T . . END=2632000 GT:DP:GQ:MIN_DP:PL 0/0:18:48:18:0,48,556 +chrX 2632001 . A . . END=2632002 GT:DP:GQ:MIN_DP:PL 0/0:18:0:18:0,0,0 +chrX 2632003 . C . . END=2632007 GT:DP:GQ:MIN_DP:PL 0/0:18:54:18:0,54,605 +chrX 2632008 . T . . END=2632009 GT:DP:GQ:MIN_DP:PL 0/0:19:0:19:0,0,0 +chrX 2632010 . A . . END=2632164 GT:DP:GQ:MIN_DP:PL 0/0:59:24:52:0,24,734 +chrX 2632165 . C . . END=2632167 GT:DP:GQ:MIN_DP:PL 0/0:60:0:60:0,0,1528 +chrX 2632168 . G . . END=2632176 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 2632177 . A G, 629.64 . AS_QUALapprox=|637|0;AS_VarDP=22|25|0;BaseQRankSum=-0.584;DP=47;MQRankSum=-1.489;QUALapprox=637;RAW_GT_COUNT=0,1,0;RAW_MQandDP=155725,47;ReadPosRankSum=1.419;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:22,25,0:47:99:637,0,584,703,658,1361:12,10,13,12 +chrX 2632178 . G . . END=2632235 GT:DP:GQ:MIN_DP:PL 0/0:47:37:46:0,37,1429 +chrX 2632236 . TTCC T, 616.60 . AS_QUALapprox=|624|0;AS_VarDP=30|17|0;BaseQRankSum=1.372;DP=52;MQRankSum=-4.910;QUALapprox=624;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165753,52;ReadPosRankSum=0.591;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:30,17,0:47:99:0|1:2632236_TTCC_T:624,0,1208,714,1260,1974:2632236:11,19,7,10 +chrX 2632240 . T . . END=2632241 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,120,1800 +chrX 2632242 . T TGG, 616.60 . AS_QUALapprox=|624|0;AS_VarDP=30|17|0;BaseQRankSum=0.974;DP=48;MQRankSum=-4.910;QUALapprox=624;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151353,48;ReadPosRankSum=0.853;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:30,17,0:47:99:0|1:2632236_TTCC_T:624,0,1209,714,1260,1974:2632236:11,19,7,10 +chrX 2632243 . T . . END=2632249 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,120,1800 +chrX 2632250 . C G, 642.64 . AS_QUALapprox=|650|0;AS_VarDP=35|18|0;BaseQRankSum=-0.483;DP=54;MQRankSum=-4.550;QUALapprox=650;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169753,54;ReadPosRankSum=0.808;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:35,18,0:53:99:0|1:2632236_TTCC_T:650,0,1415,756,1470,2225:2632236:16,19,6,12 +chrX 2632251 . G . . END=2632260 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 2632261 . G A, 582.64 . AS_QUALapprox=|590|0;AS_VarDP=41|17|0;BaseQRankSum=-0.521;DP=59;MQRankSum=-5.093;QUALapprox=590;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187753,59;ReadPosRankSum=1.283;VarDP=58 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:41,17,0:58:99:0|1:2632236_TTCC_T:590,0,1670,714,1722,2435:2632236:19,22,5,12 +chrX 2632262 . A . . END=2632263 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 2632264 . C T, 579.64 . AS_QUALapprox=|587|0;AS_VarDP=42|17|0;BaseQRankSum=0.012;DP=60;MQRankSum=-4.858;QUALapprox=587;RAW_GT_COUNT=0,1,0;RAW_MQandDP=189778,60;ReadPosRankSum=1.248;VarDP=59 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:42,17,0:59:99:0|1:2632236_TTCC_T:587,0,1710,714,1761,2475:2632236:19,23,5,12 +chrX 2632265 . T . . END=2632266 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 2632267 . C T, 657.64 . AS_QUALapprox=|665|0;AS_VarDP=44|19|0;BaseQRankSum=1.028;DP=64;MQRankSum=-4.649;QUALapprox=665;RAW_GT_COUNT=0,1,0;RAW_MQandDP=204178,64;ReadPosRankSum=1.452;VarDP=63 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:44,19,0:63:99:0|1:2632236_TTCC_T:665,0,1788,798,1845,2643:2632236:20,24,6,13 +chrX 2632268 . C . . END=2632270 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 2632271 . A G, 651.64 . AS_QUALapprox=|659|0;AS_VarDP=46|19|0;BaseQRankSum=1.322;DP=66;MQRankSum=-4.760;QUALapprox=659;RAW_GT_COUNT=0,1,0;RAW_MQandDP=211378,66;ReadPosRankSum=0.926;VarDP=65 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:46,19,0:65:99:0|1:2632236_TTCC_T:659,0,1860,798,1917,2715:2632236:22,24,6,13 +chrX 2632272 . T . . END=2632305 GT:DP:GQ:MIN_DP:PL 0/0:75:99:75:0,120,1800 +chrX 2632306 . C T, 2728.06 . AS_QUALapprox=|2742|0;AS_VarDP=1|76|0;BaseQRankSum=2.519;DP=78;MQRankSum=-0.496;QUALapprox=2742;RAW_GT_COUNT=0,0,1;RAW_MQandDP=257351,78;ReadPosRankSum=-0.248;VarDP=77 GT:AD:DP:GQ:PL:SB 1/1:1,76,0:77:99:2742,221,0,2745,228,2751:1,0,39,37 +chrX 2632307 . G . . END=2632309 GT:DP:GQ:MIN_DP:PL 0/0:76:99:76:0,120,1800 +chrX 2632310 . T . . END=2632310 GT:DP:GQ:MIN_DP:PL 0/0:78:0:78:0,0,2045 +chrX 2632311 . A . . END=2632314 GT:DP:GQ:MIN_DP:PL 0/0:81:99:81:0,120,1800 +chrX 2632315 . G T, 598.64 . AS_QUALapprox=|606|0;AS_VarDP=62|22|0;BaseQRankSum=-1.279;DP=85;MQRankSum=-3.559;QUALapprox=606;RAW_GT_COUNT=0,1,0;RAW_MQandDP=276324,85;ReadPosRankSum=-1.099;VarDP=84 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:62,22,0:84:99:0|1:2632236_TTCC_T:606,0,2155,792,2221,3013:2632236:30,32,12,10 +chrX 2632316 . T . . END=2632352 GT:DP:GQ:MIN_DP:PL 0/0:108:99:108:0,120,1800 +chrX 2632353 . C . . END=2632353 GT:DP:GQ:MIN_DP:PL 0/0:111:0:111:0,0,2108 +chrX 2632354 . A . . END=2632362 GT:DP:GQ:MIN_DP:PL 0/0:111:99:111:0,120,1800 +chrX 2632363 . C T, 915.64 . AS_QUALapprox=|923|0;AS_VarDP=56|26|0;BaseQRankSum=0.689;DP=83;MQRankSum=-7.168;QUALapprox=923;RAW_GT_COUNT=0,1,0;RAW_MQandDP=272650,83;ReadPosRankSum=3.425;VarDP=82 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:56,26,0:82:99:0|1:2632363_C_T:923,0,2273,1092,2352,3443:2632363:32,24,7,19 +chrX 2632364 . A G, 912.64 . AS_QUALapprox=|920|0;AS_VarDP=57|26|0;BaseQRankSum=0.436;DP=83;MQRankSum=-7.222;QUALapprox=920;RAW_GT_COUNT=0,1,0;RAW_MQandDP=272650,83;ReadPosRankSum=3.344;VarDP=83 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:57,26,0:83:99:0|1:2632363_C_T:920,0,2315,1092,2393,3485:2632363:33,24,7,19 +chrX 2632365 . G . . END=2632382 GT:DP:GQ:MIN_DP:PL 0/0:80:99:80:0,120,1800 +chrX 2632383 . T C, 909.64 . AS_QUALapprox=|917|0;AS_VarDP=58|26|0;BaseQRankSum=0.545;DP=84;MQRankSum=-6.857;QUALapprox=917;RAW_GT_COUNT=0,1,0;RAW_MQandDP=273226,84;ReadPosRankSum=2.102;VarDP=84 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:58,26,0:84:99:0|1:2632363_C_T:917,0,2357,1092,2435,3527:2632363:34,24,7,19 +chrX 2632384 . G A, 909.64 . AS_QUALapprox=|917|0;AS_VarDP=58|26|0;BaseQRankSum=1.533;DP=84;MQRankSum=-6.857;QUALapprox=917;RAW_GT_COUNT=0,1,0;RAW_MQandDP=273226,84;ReadPosRankSum=1.999;VarDP=84 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:58,26,0:84:99:0|1:2632363_C_T:917,0,2357,1092,2435,3527:2632363:34,24,7,19 +chrX 2632385 . G . . END=2632401 GT:DP:GQ:MIN_DP:PL 0/0:81:99:81:0,120,1800 +chrX 2632402 . G A, 825.64 . AS_QUALapprox=|833|0;AS_VarDP=58|24|0;BaseQRankSum=2.247;DP=82;MQRankSum=-6.645;QUALapprox=833;RAW_GT_COUNT=0,1,0;RAW_MQandDP=270425,82;ReadPosRankSum=-0.601;VarDP=82 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:58,24,0:82:99:0|1:2632363_C_T:833,0,2363,1008,2435,3443:2632363:31,27,6,18 +chrX 2632403 . A . . END=2632403 GT:DP:GQ:MIN_DP:PL 0/0:76:99:76:0,120,1800 +chrX 2632404 . C T, 834.64 . AS_QUALapprox=|842|0;AS_VarDP=55|24|0;BaseQRankSum=1.798;DP=79;MQRankSum=-6.483;QUALapprox=842;RAW_GT_COUNT=0,1,0;RAW_MQandDP=259625,79;ReadPosRankSum=-0.904;VarDP=79 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:55,24,0:79:99:0|1:2632363_C_T:842,0,2237,1008,2309,3317:2632363:28,27,6,18 +chrX 2632405 . A . . END=2632419 GT:DP:GQ:MIN_DP:PL 0/0:75:99:75:0,120,1800 +chrX 2632420 . T C, 672.64 . AS_QUALapprox=|680|0;AS_VarDP=53|20|0;BaseQRankSum=0.642;DP=73;MQRankSum=-6.490;QUALapprox=680;RAW_GT_COUNT=0,1,0;RAW_MQandDP=242359,73;ReadPosRankSum=-1.863;VarDP=73 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:53,20,0:73:99:0|1:2632363_C_T:680,0,2165,840,2225,3065:2632363:25,28,5,15 +chrX 2632421 . G . . END=2632438 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 2632439 . C T, 210.64 . AS_QUALapprox=|218|0;AS_VarDP=53|9|0;BaseQRankSum=1.748;DP=62;MQRankSum=-6.633;QUALapprox=218;RAW_GT_COUNT=0,1,0;RAW_MQandDP=210952,62;ReadPosRankSum=-2.029;VarDP=62 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:53,9,0:62:99:0|1:2632363_C_T:218,0,2198,378,2225,2603:2632363:27,26,0,9 +chrX 2632440 . T . . END=2632440 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 2632441 . G A, 210.64 . AS_QUALapprox=|218|0;AS_VarDP=53|9|0;BaseQRankSum=1.589;DP=62;MQRankSum=-6.633;QUALapprox=218;RAW_GT_COUNT=0,1,0;RAW_MQandDP=210952,62;ReadPosRankSum=-2.159;VarDP=62 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:53,9,0:62:99:0|1:2632363_C_T:218,0,2198,378,2225,2603:2632363:27,26,0,9 +chrX 2632442 . G . . END=2632445 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 2632446 . G T, 168.64 . AS_QUALapprox=|176|0;AS_VarDP=53|8|0;BaseQRankSum=1.829;DP=61;MQRankSum=-7.061;QUALapprox=176;RAW_GT_COUNT=0,1,0;RAW_MQandDP=207352,61;ReadPosRankSum=-2.729;VarDP=61 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:53,8,0:61:99:0|1:2632363_C_T:176,0,2201,336,2225,2561:2632363:25,28,0,8 +chrX 2632447 . C T, 171.64 . AS_QUALapprox=|179|0;AS_VarDP=52|8|0;BaseQRankSum=1.774;DP=60;MQRankSum=-6.997;QUALapprox=179;RAW_GT_COUNT=0,1,0;RAW_MQandDP=203752,60;ReadPosRankSum=-2.997;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:52,8,0:60:99:0|1:2632363_C_T:179,0,2159,336,2183,2519:2632363:24,28,0,8 +chrX 2632448 . A . . END=2632452 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 2632453 . C T, 183.64 . AS_QUALapprox=|191|0;AS_VarDP=48|8|0;BaseQRankSum=1.461;DP=56;MQRankSum=-7.387;QUALapprox=191;RAW_GT_COUNT=0,1,0;RAW_MQandDP=192376,56;ReadPosRankSum=-3.629;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:48,8,0:56:99:0|1:2632363_C_T:191,0,1991,336,2016,2351:2632363:22,26,0,8 +chrX 2632454 . A . . END=2632454 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 2632455 . T TTGTGGAAG, 177.60 . AS_QUALapprox=|185|0;AS_VarDP=50|8|0;BaseQRankSum=1.028;DP=58;MQRankSum=-7.522;QUALapprox=185;RAW_GT_COUNT=0,1,0;RAW_MQandDP=199576,58;ReadPosRankSum=-3.117;VarDP=58 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:50,8,0:58:99:0|1:2632363_C_T:185,0,2075,336,2099,2435:2632363:22,28,0,8 +chrX 2632456 . T . . END=2632476 GT:DP:GQ:MIN_DP:PL 0/0:64:62:64:0,62,1453 +chrX 2632477 . G . . END=2632477 GT:DP:GQ:MIN_DP:PL 0/0:60:0:60:0,0,1249 +chrX 2632478 . G . . END=2632502 GT:DP:GQ:MIN_DP:PL 0/0:63:41:63:0,41,1727 +chrX 2632503 . G . . END=2632505 GT:DP:GQ:MIN_DP:PL 0/0:64:0:64:0,0,1622 +chrX 2632506 . G . . END=2632507 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 2632508 . A . . END=2632511 GT:DP:GQ:MIN_DP:PL 0/0:67:0:67:0,0,1429 +chrX 2632512 . T . . END=2632512 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 2632513 . G . . END=2632516 GT:DP:GQ:MIN_DP:PL 0/0:68:0:68:0,0,1746 +chrX 2632517 . C . . END=2632608 GT:DP:GQ:MIN_DP:PL 0/0:62:60:62:0,60,1691 +chrX 2632609 . A G, 1822.06 . AS_QUALapprox=|1836|0;AS_VarDP=0|57|0;DP=59;QUALapprox=1836;RAW_GT_COUNT=0,0,1;RAW_MQandDP=206215,59;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1836,171,0,1836,171,1836:0,0,29,28 +chrX 2632610 . G . . END=2633769 GT:DP:GQ:MIN_DP:PL 0/0:58:95:58:0,95,1288 +chrX 2633770 . T C, 771.64 . AS_QUALapprox=|779|0;AS_VarDP=17|28|0;BaseQRankSum=-0.084;DP=45;MQRankSum=0.000;QUALapprox=779;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=1.089;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:17,28,0:45:99:779,0,396,829,480,1309:9,8,14,14 +chrX 2633771 . A . . END=2633840 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 2633841 . G A, 1703.06 . AS_QUALapprox=|1717|0;AS_VarDP=0|52|0;DP=52;QUALapprox=1717;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1717,155,0,1717,155,1717:0,0,32,20 +chrX 2633842 . T . . END=2635619 GT:DP:GQ:MIN_DP:PL 0/0:64:92:64:0,92,1688 +chrX 2635620 . G A, 840.64 . AS_QUALapprox=|848|0;AS_VarDP=24|29|0;BaseQRankSum=2.846;DP=54;MQRankSum=0.000;QUALapprox=848;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=0.492;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:24,29,0:53:99:848,0,600,920,687,1607:12,12,14,15 +chrX 2635621 . T . . END=2635800 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,110,1639 +chrX 2635801 . A G, 1718.06 . AS_QUALapprox=|1732|0;AS_VarDP=0|52|0;DP=55;QUALapprox=1732;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1732,156,0,1732,156,1732:0,0,20,32 +chrX 2635802 . T . . END=2636388 GT:DP:GQ:MIN_DP:PL 0/0:59:57:59:0,57,1179 +chrX 2636389 . T . . END=2636389 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,1210 +chrX 2636390 . C CA,CAA, 901.02 . AS_QUALapprox=|581|721|0;AS_VarDP=0|13|21|0;DP=52;QUALapprox=918;RAW_GT_COUNT=0,0,1;RAW_MQandDP=182896,52;VarDP=34 GT:AD:DP:GQ:PL:SB 1/2:0,13,21,0:34:99:918,442,337,270,0,197,823,424,269,776:0,0,15,19 +chrX 2636391 . A . . END=2636697 GT:DP:GQ:MIN_DP:PL 0/0:58:67:58:0,67,1643 +chrX 2636698 . CAAA C,CA, 1111.03 . AS_QUALapprox=|300|1125|0;AS_VarDP=1|2|36|0;DP=71;MQRankSum=-0.116;QUALapprox=1125;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248787,71;VarDP=39 GT:AD:DP:GQ:PL:SB 2/2:1,2,36,0:39:93:1125,825,873,113,93,0,1026,880,134,1023:0,1,22,16 +chrX 2636702 . A . . END=2636854 GT:DP:GQ:MIN_DP:PL 0/0:74:99:74:0,120,1800 +chrX 2636855 . G T, 2309.06 . AS_QUALapprox=|2323|0;AS_VarDP=0|71|0;DP=76;QUALapprox=2323;RAW_GT_COUNT=0,0,1;RAW_MQandDP=273600,76;VarDP=71 GT:AD:DP:GQ:PL:SB 1/1:0,71,0:71:99:2323,213,0,2323,213,2323:0,0,33,38 +chrX 2636856 . T . . END=2637527 GT:DP:GQ:MIN_DP:PL 0/0:54:71:54:0,71,1271 +chrX 2637528 . G A, 1504.06 . AS_QUALapprox=|1518|0;AS_VarDP=0|46|0;DP=48;QUALapprox=1518;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1518,137,0,1518,137,1518:0,0,19,27 +chrX 2637529 . T . . END=2637982 GT:DP:GQ:MIN_DP:PL 0/0:51:60:51:0,60,1143 +chrX 2637983 . C G, 542.64 . AS_QUALapprox=|550|0;AS_VarDP=28|22|0;BaseQRankSum=-0.687;DP=53;MQRankSum=0.000;QUALapprox=550;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=-0.078;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:28,22,0:50:99:550,0,754,634,820,1453:11,17,12,10 +chrX 2637984 . T . . END=2638019 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 2638020 . T C, 726.64 . AS_QUALapprox=|734|0;AS_VarDP=27|29|0;BaseQRankSum=-1.818;DP=58;MQRankSum=0.000;QUALapprox=734;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=0.689;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:27,29,0:56:99:734,0,741,815,827,1643:12,15,15,14 +chrX 2638021 . G . . END=2638384 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 2638385 . C G, 950.64 . AS_QUALapprox=|958|0;AS_VarDP=27|36|0;BaseQRankSum=1.300;DP=65;MQRankSum=0.000;QUALapprox=958;RAW_GT_COUNT=0,1,0;RAW_MQandDP=231696,65;ReadPosRankSum=0.285;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:27,36,0:63:99:958,0,625,1038,732,1771:10,17,20,16 +chrX 2638386 . T . . END=2638625 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 2638626 . C T, 929.64 . AS_QUALapprox=|937|0;AS_VarDP=24|34|0;BaseQRankSum=0.756;DP=60;MQRankSum=0.000;QUALapprox=937;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=-1.303;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:24,34,0:58:99:937,0,590,1009,692,1701:14,10,13,21 +chrX 2638627 . G . . END=2639106 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,115,1737 +chrX 2639107 . C G, 608.64 . AS_QUALapprox=|616|0;AS_VarDP=28|23|0;BaseQRankSum=-0.186;DP=52;MQRankSum=0.000;QUALapprox=616;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=0.256;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:28,23,0:51:99:616,0,775,699,844,1543:17,11,9,14 +chrX 2639108 . A . . END=2639242 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 2639243 . T C, 1984.06 . AS_QUALapprox=|1998|0;AS_VarDP=0|65|0;DP=68;QUALapprox=1998;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;VarDP=65 GT:AD:DP:GQ:PL:SB 1/1:0,65,0:65:99:1998,194,0,1998,194,1998:0,0,34,31 +chrX 2639244 . G . . END=2639268 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 2639269 . T C, 1921.06 . AS_QUALapprox=|1935|0;AS_VarDP=0|59|0;DP=61;QUALapprox=1935;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1935,177,0,1935,177,1935:0,0,30,29 +chrX 2639270 . T . . END=2639579 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 2639580 . G T, 1915.06 . AS_QUALapprox=|1929|0;AS_VarDP=0|61|0;DP=63;QUALapprox=1929;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=61 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:1929,182,0,1929,182,1929:0,0,30,31 +chrX 2639581 . A . . END=2640175 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 2640176 . A G, 1732.06 . AS_QUALapprox=|1746|0;AS_VarDP=0|52|0;DP=54;QUALapprox=1746;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1746,156,0,1746,156,1746:0,0,23,29 +chrX 2640177 . A . . END=2641205 GT:DP:GQ:MIN_DP:PL 0/0:57:37:45:0,37,1267 +chrX 2641206 . T G, 1743.06 . AS_QUALapprox=|1757|0;AS_VarDP=0|52|0;DP=53;QUALapprox=1757;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1757,156,0,1757,156,1757:0,0,21,31 +chrX 2641207 . T . . END=2641272 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,102,1530 +chrX 2641273 . C T, 662.64 . AS_QUALapprox=|670|0;AS_VarDP=24|24|0;BaseQRankSum=0.882;DP=48;MQRankSum=0.000;QUALapprox=670;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=0.454;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:24,24,0:48:99:670,0,647,742,719,1461:17,7,13,11 +chrX 2641274 . G . . END=2641542 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,110,1559 +chrX 2641543 . A AT, 557.60 . AS_QUALapprox=|565|0;AS_VarDP=32|30|0;BaseQRankSum=-2.366;DP=71;MQRankSum=0.000;QUALapprox=565;RAW_GT_COUNT=0,1,0;RAW_MQandDP=255600,71;ReadPosRankSum=1.804;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:32,30,0:62:99:565,0,645,661,735,1396:14,18,7,23 +chrX 2641544 . T . . END=2641909 GT:DP:GQ:MIN_DP:PL 0/0:56:63:56:0,63,1346 +chrX 2641910 . G C, 564.64 . AS_QUALapprox=|572|0;AS_VarDP=27|22|0;BaseQRankSum=0.066;DP=54;MQRankSum=0.000;QUALapprox=572;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=-0.563;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:27,22,0:49:99:572,0,751,653,817,1470:10,17,10,12 +chrX 2641911 . A . . END=2641941 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,117,1755 +chrX 2641942 . A C, 553.64 . AS_QUALapprox=|561|0;AS_VarDP=31|21|0;BaseQRankSum=0.000;DP=55;MQRankSum=0.000;QUALapprox=561;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=0.935;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:31,21,0:52:99:561,0,898,648,983,1775:14,14,10,8 +chrX 2641943 . A . . END=2642323 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,112,1618 +chrX 2642324 . C A, 820.64 . AS_QUALapprox=|828|0;AS_VarDP=35|31|0;BaseQRankSum=1.204;DP=66;MQRankSum=0.000;QUALapprox=828;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=0.964;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:35,31,0:66:99:828,0,918,933,1011,1944:21,14,13,18 +chrX 2642325 . T . . END=2643103 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 2643104 . A G, 627.64 . AS_QUALapprox=|635|0;AS_VarDP=29|27|0;BaseQRankSum=-1.928;DP=57;MQRankSum=0.000;QUALapprox=635;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-0.394;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:29,27,0:56:99:635,0,780,722,861,1583:16,13,12,15 +chrX 2643105 . G . . END=2643613 GT:DP:GQ:MIN_DP:PL 0/0:58:71:58:0,71,1276 +chrX 2643614 . G A, 1772.06 . AS_QUALapprox=|1786|0;AS_VarDP=1|56|0;BaseQRankSum=2.369;DP=60;MQRankSum=0.000;QUALapprox=1786;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;ReadPosRankSum=0.882;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:1,56,0:57:99:1786,160,0,1789,167,1796:1,0,25,31 +chrX 2643615 . C . . END=2644011 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 2644012 . T C, 984.64 . AS_QUALapprox=|992|0;AS_VarDP=26|35|0;BaseQRankSum=-1.752;DP=63;MQRankSum=0.000;QUALapprox=992;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=-0.204;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:26,35,0:61:99:992,0,719,1070,825,1895:9,17,16,19 +chrX 2644013 . A . . END=2644094 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 2644095 . T G, 828.64 . AS_QUALapprox=|836|0;AS_VarDP=29|30|0;BaseQRankSum=2.286;DP=61;MQRankSum=0.000;QUALapprox=836;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=1.320;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:29,30,0:59:99:836,0,716,923,806,1728:15,14,13,17 +chrX 2644096 . C . . END=2644296 GT:DP:GQ:MIN_DP:PL 0/0:52:67:52:0,67,1261 +chrX 2644297 . C T, 907.64 . AS_QUALapprox=|915|0;AS_VarDP=25|32|0;BaseQRankSum=3.107;DP=57;MQRankSum=0.000;QUALapprox=915;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=0.997;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:25,32,0:57:99:915,0,608,990,704,1694:12,13,15,17 +chrX 2644298 . G . . END=2644384 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 2644385 . C CT, 1152.60 . AS_QUALapprox=|1160|0;AS_VarDP=35|34|0;BaseQRankSum=0.774;DP=72;MQRankSum=0.000;QUALapprox=1160;RAW_GT_COUNT=0,1,0;RAW_MQandDP=259200,72;ReadPosRankSum=-0.781;VarDP=69 GT:AD:DP:GQ:PL:SB 0/1:35,34,0:69:99:1160,0,1199,1265,1302,2567:22,13,20,14 +chrX 2644386 . C . . END=2644534 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 2644535 . G A, 839.64 . AS_QUALapprox=|847|0;AS_VarDP=28|31|0;BaseQRankSum=1.290;DP=61;MQRankSum=0.000;QUALapprox=847;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=0.964;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:28,31,0:59:99:847,0,717,931,810,1741:16,12,13,18 +chrX 2644536 . A . . END=2644985 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 2644986 . A G, 499.64 . AS_QUALapprox=|507|0;AS_VarDP=28|20|0;BaseQRankSum=-0.068;DP=48;MQRankSum=0.000;QUALapprox=507;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=0.858;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:28,20,0:48:99:507,0,774,590,834,1424:11,17,10,10 +chrX 2644987 . A . . END=2645265 GT:DP:GQ:MIN_DP:PL 0/0:37:45:35:0,45,1021 +chrX 2645266 . AAAAAG A, 293.60 . AS_QUALapprox=|301|0;AS_VarDP=24|11|0;BaseQRankSum=0.000;DP=39;MQRankSum=0.739;QUALapprox=301;RAW_GT_COUNT=0,1,0;RAW_MQandDP=136400,39;ReadPosRankSum=0.459;VarDP=35 GT:AD:DP:GQ:PL:SB 0/1:24,11,0:35:99:301,0,877,373,910,1283:14,10,5,6 +chrX 2645272 . A . . END=2645297 GT:DP:GQ:MIN_DP:PL 0/0:40:86:40:0,86,1301 +chrX 2645298 . T C, 757.64 . AS_QUALapprox=|765|0;AS_VarDP=25|20|0;BaseQRankSum=-0.128;DP=46;MQRankSum=0.000;QUALapprox=765;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=-1.291;VarDP=45 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,20,0:45:99:0|1:2645298_T_C:765,0,990,840,1050,1890:2645298:16,9,12,8 +chrX 2645299 . G A, 757.64 . AS_QUALapprox=|765|0;AS_VarDP=25|20|0;BaseQRankSum=0.939;DP=46;MQRankSum=0.000;QUALapprox=765;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=-1.291;VarDP=45 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,20,0:45:99:0|1:2645298_T_C:765,0,990,840,1050,1890:2645298:16,9,12,8 +chrX 2645300 . C . . END=2645359 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,99,1286 +chrX 2645360 . A G, 544.64 . AS_QUALapprox=|552|0;AS_VarDP=24|22|0;BaseQRankSum=-1.277;DP=50;MQRankSum=0.000;QUALapprox=552;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=0.792;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:24,22,0:46:99:552,0,666,624,732,1356:14,10,12,10 +chrX 2645361 . T . . END=2645404 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,113,1514 +chrX 2645405 . A AT, 450.60 . AS_QUALapprox=|458|0;AS_VarDP=28|22|0;BaseQRankSum=-0.348;DP=55;MQRankSum=0.000;QUALapprox=458;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=0.763;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:28,22,0:50:99:458,0,638,542,704,1246:15,13,13,9 +chrX 2645406 . T . . END=2645637 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,107,1504 +chrX 2645638 . C A, 739.64 . AS_QUALapprox=|747|0;AS_VarDP=18|26|0;BaseQRankSum=0.901;DP=48;MQRankSum=0.000;QUALapprox=747;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=-0.430;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:18,26,0:44:99:747,0,474,801,552,1352:5,13,13,13 +chrX 2645639 . C . . END=2645789 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 2645790 . G A, 1080.64 . AS_QUALapprox=|1088|0;AS_VarDP=19|28|0;BaseQRankSum=-0.086;DP=49;MQRankSum=0.000;QUALapprox=1088;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=1.509;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:19,28,0:47:99:0|1:2645790_G_A:1088,0,682,1145,766,1911:2645790:10,9,14,14 +chrX 2645791 . G . . END=2645797 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,117,1755 +chrX 2645798 . C T, 1085.64 . AS_QUALapprox=|1093|0;AS_VarDP=17|28|0;BaseQRankSum=0.810;DP=46;MQRankSum=0.000;QUALapprox=1093;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=0.844;VarDP=45 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:17,28,0:45:99:0|1:2645790_G_A:1093,0,619,1144,703,1847:2645790:9,8,15,13 +chrX 2645799 . G . . END=2645817 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,120,1800 +chrX 2645818 . G A, 476.64 . AS_QUALapprox=|484|0;AS_VarDP=26|18|0;BaseQRankSum=2.273;DP=46;MQRankSum=0.000;QUALapprox=484;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=-0.561;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:26,18,0:44:99:484,0,652,562,706,1268:13,13,8,10 +chrX 2645819 . T . . END=2645849 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,99,1485 +chrX 2645850 . C G, 591.64 . AS_QUALapprox=|599|0;AS_VarDP=16|21|0;BaseQRankSum=0.828;DP=40;MQRankSum=0.000;QUALapprox=599;RAW_GT_COUNT=0,1,0;RAW_MQandDP=144000,40;ReadPosRankSum=-0.874;VarDP=37 GT:AD:DP:GQ:PL:SB 0/1:16,21,0:37:99:599,0,415,647,478,1125:7,9,10,11 +chrX 2645851 . T . . END=2645909 GT:DP:GQ:MIN_DP:PL 0/0:44:98:44:0,98,1285 +chrX 2645910 . G C, 1967.06 . AS_QUALapprox=|1981|0;AS_VarDP=0|61|0;DP=61;QUALapprox=1981;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=61 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:1981,183,0,1981,183,1981:0,0,30,31 +chrX 2645911 . C . . END=2645972 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 2645973 . C G, 884.64 . AS_QUALapprox=|892|0;AS_VarDP=35|32|0;BaseQRankSum=3.450;DP=67;MQRankSum=0.000;QUALapprox=892;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=0.220;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:35,32,0:67:99:892,0,821,996,917,1913:18,17,12,20 +chrX 2645974 . G . . END=2646008 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 2646009 . T C, 1959.06 . AS_QUALapprox=|1973|0;AS_VarDP=0|64|0;DP=66;QUALapprox=1973;RAW_GT_COUNT=0,0,1;RAW_MQandDP=236809,66;VarDP=64 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:1973,191,0,1973,191,1973:0,0,27,37 +chrX 2646010 . G . . END=2646222 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 2646223 . T A,TA, 486.64 . AS_QUALapprox=|494|0|0;AS_VarDP=27|24|0|0;BaseQRankSum=0.053;DP=57;MQRankSum=0.982;QUALapprox=494;RAW_GT_COUNT=0,1,0;RAW_MQandDP=203941,57;ReadPosRankSum=1.397;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:27,24,0,0:51:99:494,0,731,630,718,1477,615,770,1438,1443:13,14,8,16 +chrX 2646224 . A . . END=2646368 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 2646369 . C T, 610.64 . AS_QUALapprox=|618|0;AS_VarDP=31|23|0;BaseQRankSum=1.622;DP=56;MQRankSum=0.000;QUALapprox=618;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=0.114;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:31,23,0:54:99:618,0,819,710,888,1598:16,15,16,7 +chrX 2646370 . G . . END=2646641 GT:DP:GQ:MIN_DP:PL 0/0:51:73:51:0,73,1009 +chrX 2646642 . C T, 977.64 . AS_QUALapprox=|985|0;AS_VarDP=25|37|0;BaseQRankSum=-0.207;DP=64;MQRankSum=0.000;QUALapprox=985;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=0.452;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:25,37,0:62:99:985,0,608,1060,719,1779:14,11,20,17 +chrX 2646643 . A . . END=2646973 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 2646974 . C T, 955.64 . AS_QUALapprox=|963|0;AS_VarDP=23|37|0;BaseQRankSum=-2.373;DP=61;MQRankSum=0.000;QUALapprox=963;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=0.395;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:23,37,0:60:99:963,0,610,1033,720,1753:13,10,17,20 +chrX 2646975 . T . . END=2647007 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 2647008 . A C, 996.64 . AS_QUALapprox=|1004|0;AS_VarDP=24|38|0;BaseQRankSum=-1.117;DP=63;MQRankSum=0.000;QUALapprox=1004;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=-0.152;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:24,38,0:62:99:1004,0,606,1076,720,1796:13,11,14,24 +chrX 2647009 . C . . END=2647254 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,104,1544 +chrX 2647255 . CGGTT GGGTT,C, 730.64 . AS_QUALapprox=|738|0|0;AS_VarDP=32|29|2|0;BaseQRankSum=-0.061;DP=63;MQRankSum=0.000;QUALapprox=738;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=-0.956;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:32,29,2,0:63:99:738,0,825,829,915,2473,894,978,2196,2154:22,10,17,14 +chrX 2647260 . T . . END=2647389 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,102,1755 +chrX 2647390 . C A, 600.64 . AS_QUALapprox=|608|0;AS_VarDP=22|22|0;BaseQRankSum=-1.398;DP=50;MQRankSum=0.000;QUALapprox=608;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=-0.364;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:22,22,0:44:99:608,0,630,674,697,1371:13,9,12,10 +chrX 2647391 . A . . END=2647400 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,105,1381 +chrX 2647401 . C A, 639.64 . AS_QUALapprox=|647|0;AS_VarDP=20|23|0;BaseQRankSum=-0.386;DP=43;MQRankSum=0.000;QUALapprox=647;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154800,43;ReadPosRankSum=-1.778;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:20,23,0:43:99:647,0,541,707,610,1317:10,10,13,10 +chrX 2647402 . C . . END=2647546 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,115,1391 +chrX 2647547 . T C, 837.64 . AS_QUALapprox=|845|0;AS_VarDP=30|33|0;BaseQRankSum=-2.198;DP=68;MQRankSum=0.000;QUALapprox=845;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=0.847;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:30,33,0:63:99:845,0,824,935,923,1858:11,19,17,16 +chrX 2647548 . G . . END=2647578 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 2647579 . A G, 1060.64 . AS_QUALapprox=|1068|0;AS_VarDP=24|40|0;BaseQRankSum=-1.641;DP=65;MQRankSum=0.000;QUALapprox=1068;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=0.666;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:24,40,0:64:99:1068,0,597,1140,717,1857:7,17,22,18 +chrX 2647580 . G . . END=2647790 GT:DP:GQ:MIN_DP:PL 0/0:47:83:47:0,83,1282 +chrX 2647791 . G A, 830.64 . AS_QUALapprox=|838|0;AS_VarDP=21|29|0;BaseQRankSum=-0.287;DP=51;MQRankSum=0.000;QUALapprox=838;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=0.315;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:21,29,0:50:99:838,0,568,901,655,1556:13,8,14,15 +chrX 2647792 . T . . END=2648074 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,118,1781 +chrX 2648075 . T A, 1205.64 . AS_QUALapprox=|1213|0;AS_VarDP=19|31|0;BaseQRankSum=-0.846;DP=51;MQRankSum=0.000;QUALapprox=1213;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-1.209;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:19,31,0:50:99:0|1:2648075_T_A:1213,0,704,1270,797,2067:2648075:11,8,15,16 +chrX 2648076 . G . . END=2648081 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,120,1800 +chrX 2648082 . C T, 1151.64 . AS_QUALapprox=|1159|0;AS_VarDP=19|29|0;BaseQRankSum=-0.403;DP=48;MQRankSum=0.000;QUALapprox=1159;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=-0.359;VarDP=48 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:19,29,0:48:99:0|1:2648075_T_A:1159,0,710,1216,797,2013:2648075:11,8,13,16 +chrX 2648083 . G . . END=2648224 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,109,1800 +chrX 2648225 . GTTT G, 1152.60 . AS_QUALapprox=|1160|0;AS_VarDP=33|30|0;BaseQRankSum=0.766;DP=63;MQRankSum=0.000;QUALapprox=1160;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=2.110;VarDP=63 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:33,30,0:63:99:0|1:2648225_GTTT_G:1160,0,1295,1260,1386,2645:2648225:19,14,13,17 +chrX 2648229 . C CCCAT, 1152.60 . AS_QUALapprox=|1160|0;AS_VarDP=33|30|0;BaseQRankSum=0.068;DP=64;MQRankSum=0.000;QUALapprox=1160;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=1.824;VarDP=63 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:33,30,0:63:99:0|1:2648225_GTTT_G:1160,0,1295,1260,1386,2645:2648225:19,14,13,17 +chrX 2648230 . T . . END=2648441 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 2648442 . A G, 989.64 . AS_QUALapprox=|997|0;AS_VarDP=21|34|0;BaseQRankSum=2.685;DP=56;MQRankSum=0.000;QUALapprox=997;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=0.789;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:21,34,0:55:99:997,0,480,1060,582,1642:13,8,23,11 +chrX 2648443 . G . . END=2648469 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,117,1755 +chrX 2648470 . A G, 848.64 . AS_QUALapprox=|856|0;AS_VarDP=18|32|0;BaseQRankSum=-1.892;DP=55;MQRankSum=0.000;QUALapprox=856;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=0.081;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:18,32,0:50:99:856,0,466,910,562,1471:8,10,22,10 +chrX 2648471 . G . . END=2648542 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 2648543 . T C, 1035.64 . AS_QUALapprox=|1043|0;AS_VarDP=37|28|0;BaseQRankSum=0.159;DP=65;MQRankSum=0.000;QUALapprox=1043;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=-1.398;VarDP=65 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:37,28,0:65:99:0|1:2648543_T_C:1043,0,1448,1154,1533,2687:2648543:13,24,9,19 +chrX 2648544 . G . . END=2648556 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 2648557 . A G, 1000.64 . AS_QUALapprox=|1008|0;AS_VarDP=38|27|0;BaseQRankSum=-0.025;DP=65;MQRankSum=0.000;QUALapprox=1008;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=-1.605;VarDP=65 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:38,27,0:65:99:0|1:2648543_T_C:1008,0,1483,1123,1564,2687:2648543:13,25,9,18 +chrX 2648558 . T . . END=2648599 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 2648600 . A G, 904.64 . AS_QUALapprox=|912|0;AS_VarDP=35|33|0;BaseQRankSum=0.671;DP=71;MQRankSum=0.000;QUALapprox=912;RAW_GT_COUNT=0,1,0;RAW_MQandDP=255600,71;ReadPosRankSum=-1.172;VarDP=68 GT:AD:DP:GQ:PL:SB 0/1:35,33,0:68:99:912,0,962,1018,1061,2079:11,24,11,22 +chrX 2648601 . T . . END=2648708 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 2648709 . T C, 946.64 . AS_QUALapprox=|954|0;AS_VarDP=29|36|0;BaseQRankSum=-0.741;DP=67;MQRankSum=0.000;QUALapprox=954;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=-1.835;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:29,36,0:65:99:954,0,763,1042,871,1913:18,11,16,20 +chrX 2648710 . T . . END=2648998 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1562 +chrX 2648999 . G A, 668.64 . AS_QUALapprox=|676|0;AS_VarDP=22|24|0;BaseQRankSum=-0.488;DP=46;MQRankSum=0.000;QUALapprox=676;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=0.165;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:22,24,0:46:99:676,0,616,742,688,1430:8,14,13,11 +chrX 2649000 . T . . END=2649161 GT:DP:GQ:MIN_DP:PL 0/0:62:87:62:0,87,1395 +chrX 2649162 . C T, 732.64 . AS_QUALapprox=|740|0;AS_VarDP=30|28|0;BaseQRankSum=-0.308;DP=59;MQRankSum=0.000;QUALapprox=740;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=0.444;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:30,28,0:58:99:740,0,789,829,873,1702:22,8,14,14 +chrX 2649163 . T . . END=2649195 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 2649196 . C G, 1058.64 . AS_QUALapprox=|1066|0;AS_VarDP=26|28|0;BaseQRankSum=1.646;DP=55;MQRankSum=0.000;QUALapprox=1066;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-1.161;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,28,0:54:99:0|1:2649196_C_G:1066,0,945,1145,1030,2174:2649196:13,13,15,13 +chrX 2649197 . T . . END=2649203 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 2649204 . G C, 1102.64 . AS_QUALapprox=|1110|0;AS_VarDP=25|29|0;BaseQRankSum=1.041;DP=54;MQRankSum=0.000;QUALapprox=1110;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=-1.073;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,29,0:54:99:0|1:2649196_C_G:1110,0,920,1185,1008,2193:2649196:13,12,15,14 +chrX 2649205 . T . . END=2649243 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 2649244 . C T, 637.64 . AS_QUALapprox=|645|0;AS_VarDP=28|23|0;BaseQRankSum=2.775;DP=51;MQRankSum=0.000;QUALapprox=645;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-0.701;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:28,23,0:51:99:645,0,722,729,791,1520:15,13,10,13 +chrX 2649245 . G . . END=2649335 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 2649336 . T C, 652.64 . AS_QUALapprox=|660|0;AS_VarDP=39|26|0;BaseQRankSum=-0.523;DP=68;MQRankSum=0.000;QUALapprox=660;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=1.239;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:39,26,0:65:99:660,0,1065,776,1143,1918:13,26,14,12 +chrX 2649337 . A . . END=2649505 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 2649506 . G T, 593.64 . AS_QUALapprox=|601|0;AS_VarDP=33|25|0;BaseQRankSum=-1.361;DP=59;MQRankSum=0.000;QUALapprox=601;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-1.029;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:33,25,0:58:99:601,0,894,699,968,1667:17,16,13,12 +chrX 2649507 . A . . END=2649605 GT:DP:GQ:MIN_DP:PL 0/0:53:87:53:0,87,1490 +chrX 2649606 . G C, 416.64 . AS_QUALapprox=|424|0;AS_VarDP=28|16|0;BaseQRankSum=1.115;DP=48;MQRankSum=0.000;QUALapprox=424;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=0.671;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:28,16,0:44:99:424,0,821,508,869,1377:17,11,7,9 +chrX 2649607 . A . . END=2649790 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 2649791 . A G, 1136.64 . AS_QUALapprox=|1144|0;AS_VarDP=28|42|0;BaseQRankSum=-0.319;DP=72;MQRankSum=0.000;QUALapprox=1144;RAW_GT_COUNT=0,1,0;RAW_MQandDP=259200,72;ReadPosRankSum=-0.726;VarDP=70 GT:AD:DP:GQ:PL:SB 0/1:28,42,0:70:99:1144,0,699,1227,824,2052:16,12,16,26 +chrX 2649792 . G . . END=2649962 GT:DP:GQ:MIN_DP:PL 0/0:74:99:74:0,120,1800 +chrX 2649963 . TTGGATGGATGGATGGA T,TTGGATGGATGGA, 1006.60 . AS_QUALapprox=|0|1014|0;AS_VarDP=28|0|27|0;BaseQRankSum=-1.448;DP=87;MQRankSum=1.754;QUALapprox=1014;RAW_GT_COUNT=0,1,0;RAW_MQandDP=308001,87;ReadPosRankSum=1.742;VarDP=55 GT:AD:DP:GQ:PL:SB 0/2:28,0,27,0:55:99:1014,1138,2836,0,1163,1419,1166,2600,1369,2735:12,16,12,15 +chrX 2649979 . A *,AGGGATGGATGGGTGTTTGGATGGATATT,AGGGATGGATGGGTGTTTGGATGGATGTT, 463.01 . AS_QUALapprox=|0|651|0|0;AS_VarDP=40|0|10|4|0;BaseQRankSum=-0.144;DP=82;MQRankSum=-2.958;QUALapprox=651;RAW_GT_COUNT=0,1,0;RAW_MQandDP=290001,82;ReadPosRankSum=-0.079;VarDP=54 GT:AD:DP:GQ:PL:SB 0/2:40,0,10,4,0:54:99:651,443,2707,0,1696,1739,690,2295,1701,2743,827,2524,1838,2769,2979:17,23,8,6 +chrX 2649980 . T . . END=2650031 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1687 +chrX 2650032 . CAGGT C, 851.60 . AS_QUALapprox=|859|0;AS_VarDP=32|23|0;BaseQRankSum=-0.476;DP=58;MQRankSum=0.000;QUALapprox=859;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=1.688;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:32,23,0:55:99:859,0,1254,955,1323,2278:11,21,11,12 +chrX 2650037 . G . . END=2650139 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,113,1508 +chrX 2650140 . A T, 1091.64 . AS_QUALapprox=|1099|0;AS_VarDP=19|29|0;BaseQRankSum=-1.711;DP=49;MQRankSum=0.000;QUALapprox=1099;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=0.427;VarDP=48 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:19,29,0:48:99:0|1:2650140_A_T:1099,0,624,1155,712,1867:2650140:9,10,12,17 +chrX 2650141 . G . . END=2650162 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,120,1800 +chrX 2650163 . C A, 1122.64 . AS_QUALapprox=|1130|0;AS_VarDP=19|30|0;BaseQRankSum=-2.187;DP=50;MQRankSum=0.000;QUALapprox=1130;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=0.692;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:19,30,0:49:99:0|1:2650140_A_T:1130,0,646,1187,736,1924:2650140:11,8,13,17 +chrX 2650164 . T . . END=2650262 GT:DP:GQ:MIN_DP:PL 0/0:48:78:48:0,78,1166 +chrX 2650263 . AGATG A,AGATGGATGGATG, 651.60 . AS_QUALapprox=|659|0|0;AS_VarDP=19|26|0|0;BaseQRankSum=-0.638;DP=56;MQRankSum=0.000;QUALapprox=659;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198576,56;ReadPosRankSum=-0.993;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:19,26,0,0:45:99:659,0,571,784,604,1793,777,640,1626,1584:9,10,14,12 +chrX 2650268 . G . . END=2650284 GT:DP:GQ:MIN_DP:PL 0/0:52:72:52:0,72,1417 +chrX 2650285 . ATGGT A, 466.60 . AS_QUALapprox=|474|0;AS_VarDP=30|19|0;BaseQRankSum=1.556;DP=57;MQRankSum=0.000;QUALapprox=474;RAW_GT_COUNT=0,1,0;RAW_MQandDP=202176,57;ReadPosRankSum=0.033;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:30,19,0:49:99:474,0,770,582,898,1730:17,13,9,8 +chrX 2650290 . T . . END=2650392 GT:DP:GQ:MIN_DP:PL 0/0:56:80:56:0,80,1420 +chrX 2650393 . G A, 660.64 . AS_QUALapprox=|668|0;AS_VarDP=28|24|0;BaseQRankSum=0.895;DP=53;MQRankSum=0.000;QUALapprox=668;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=1.561;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:28,24,0:52:99:668,0,786,752,858,1610:14,14,8,16 +chrX 2650394 . T . . END=2650793 GT:DP:GQ:MIN_DP:PL 0/0:52:83:52:0,83,1226 +chrX 2650794 . T C, 673.64 . AS_QUALapprox=|681|0;AS_VarDP=21|25|0;BaseQRankSum=-0.957;DP=49;MQRankSum=0.000;QUALapprox=681;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=0.474;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:21,25,0:46:99:681,0,572,744,647,1391:7,14,15,10 +chrX 2650795 . A . . END=2650862 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,117,1298 +chrX 2650863 . C T, 453.64 . AS_QUALapprox=|461|0;AS_VarDP=30|18|0;BaseQRankSum=0.808;DP=50;MQRankSum=0.000;QUALapprox=461;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=-0.628;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:30,18,0:48:99:461,0,838,551,893,1444:13,17,8,10 +chrX 2650864 . T . . END=2651070 GT:DP:GQ:MIN_DP:PL 0/0:47:80:47:0,80,1233 +chrX 2651071 . C CAT, 656.60 . AS_QUALapprox=|664|0;AS_VarDP=22|18|0;BaseQRankSum=-0.372;DP=42;MQRankSum=0.000;QUALapprox=664;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151200,42;ReadPosRankSum=0.068;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:22,18,0:40:99:664,0,864,730,918,1648:10,12,9,9 +chrX 2651072 . T . . END=2651169 GT:DP:GQ:MIN_DP:PL 0/0:41:75:41:0,75,1084 +chrX 2651170 . G C, 652.64 . AS_QUALapprox=|660|0;AS_VarDP=16|23|0;BaseQRankSum=1.393;DP=44;MQRankSum=0.000;QUALapprox=660;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=-0.714;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:16,23,0:39:99:660,0,399,708,468,1176:7,9,11,12 +chrX 2651171 . C . . END=2651375 GT:DP:GQ:MIN_DP:PL 0/0:51:89:51:0,89,1296 +chrX 2651376 . T G, 778.64 . AS_QUALapprox=|786|0;AS_VarDP=20|29|0;BaseQRankSum=-1.525;DP=51;MQRankSum=0.000;QUALapprox=786;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=0.804;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:20,29,0:49:99:786,0,537,846,624,1470:10,10,18,11 +chrX 2651377 . C . . END=2651466 GT:DP:GQ:MIN_DP:PL 0/0:50:87:50:0,87,1291 +chrX 2651467 . G A, 443.64 . AS_QUALapprox=|451|0;AS_VarDP=19|16|0;BaseQRankSum=1.949;DP=37;MQRankSum=0.000;QUALapprox=451;RAW_GT_COUNT=0,1,0;RAW_MQandDP=133200,37;ReadPosRankSum=-0.613;VarDP=35 GT:AD:DP:GQ:PL:SB 0/1:19,16,0:35:99:451,0,500,508,549,1057:12,7,8,8 +chrX 2651468 . T . . END=2651530 GT:DP:GQ:MIN_DP:PL 0/0:42:82:42:0,82,1018 +chrX 2651531 . G A, 574.64 . AS_QUALapprox=|582|0;AS_VarDP=25|22|0;BaseQRankSum=-0.180;DP=47;MQRankSum=-1.023;QUALapprox=582;RAW_GT_COUNT=0,1,0;RAW_MQandDP=168304,47;ReadPosRankSum=0.832;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:25,22,0:47:99:582,0,682,657,748,1405:14,11,8,14 +chrX 2651532 . G . . END=2651585 GT:DP:GQ:MIN_DP:PL 0/0:39:88:39:0,88,1063 +chrX 2651586 . T C, 1225.06 . AS_QUALapprox=|1239|0;AS_VarDP=0|38|0;DP=39;QUALapprox=1239;RAW_GT_COUNT=0,0,1;RAW_MQandDP=139504,39;VarDP=38 GT:AD:DP:GQ:PL:SB 1/1:0,38,0:38:99:1239,114,0,1239,114,1239:0,0,18,20 +chrX 2651587 . G . . END=2651640 GT:DP:GQ:MIN_DP:PL 0/0:36:51:36:0,51,765 +chrX 2651641 . CA C, 105.60 . AS_QUALapprox=|113|0;AS_VarDP=19|11|0;BaseQRankSum=-2.011;DP=44;MQRankSum=-0.298;QUALapprox=113;RAW_GT_COUNT=0,1,0;RAW_MQandDP=153824,44;ReadPosRankSum=0.024;VarDP=30 GT:AD:DP:GQ:PL:SB 0/1:19,11,0:30:99:113,0,227,165,258,424:9,10,6,5 +chrX 2651643 . A . . END=2651671 GT:DP:GQ:MIN_DP:PL 0/0:38:75:38:0,75,1028 +chrX 2651672 . GGAAGAAGAA G,GGAAGAA, 1309.02 . AS_QUALapprox=|493|891|0;AS_VarDP=0|12|20|0;DP=44;QUALapprox=1326;RAW_GT_COUNT=0,0,1;RAW_MQandDP=152928,44;VarDP=32 GT:AD:DP:GQ:PL:SB 1/2:0,12,20,0:32:99:1326,833,894,496,0,435,1336,886,503,1381:0,0,14,18 +chrX 2651682 . G . . END=2651791 GT:DP:GQ:MIN_DP:PL 0/0:47:26:45:0,26,1180 +chrX 2651792 . AT A, 1106.03 . AS_QUALapprox=|1120|0;AS_VarDP=0|39|0;DP=48;QUALapprox=1120;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=39 GT:AD:DP:GQ:PL:SB 1/1:0,39,0:39:99:1120,117,0,1120,117,1120:0,0,20,19 +chrX 2651794 . T . . END=2652081 GT:DP:GQ:MIN_DP:PL 0/0:54:81:54:0,81,1459 +chrX 2652082 . C T, 1725.06 . AS_QUALapprox=|1739|0;AS_VarDP=2|52|0;BaseQRankSum=4.124;DP=58;MQRankSum=5.197;QUALapprox=1739;RAW_GT_COUNT=0,0,1;RAW_MQandDP=206161,58;ReadPosRankSum=0.137;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:2,52,0:54:99:1739,142,0,1744,156,1758:1,1,22,30 +chrX 2652083 . C . . END=2652352 GT:DP:GQ:MIN_DP:PL 0/0:56:95:56:0,95,1800 +chrX 2652353 . C T, 695.64 . AS_QUALapprox=|703|0;AS_VarDP=27|26|0;BaseQRankSum=-0.440;DP=53;MQRankSum=0.000;QUALapprox=703;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=-0.018;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:27,26,0:53:99:703,0,748,784,826,1610:14,13,11,15 +chrX 2652354 . C . . END=2652629 GT:DP:GQ:MIN_DP:PL 0/0:47:87:47:0,87,1250 +chrX 2652630 . T C, 591.64 . AS_QUALapprox=|599|0;AS_VarDP=21|22|0;BaseQRankSum=-1.365;DP=47;MQRankSum=-0.578;QUALapprox=599;RAW_GT_COUNT=0,1,0;RAW_MQandDP=163370,47;ReadPosRankSum=-1.094;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:21,22,0:43:99:599,0,601,663,667,1330:9,12,6,16 +chrX 2652631 . G . . END=2654037 GT:DP:GQ:MIN_DP:PL 0/0:65:80:65:0,80,1350 +chrX 2654038 . A G, 2403.06 . AS_QUALapprox=|2417|0;AS_VarDP=0|73|0;DP=76;QUALapprox=2417;RAW_GT_COUNT=0,0,1;RAW_MQandDP=272500,76;VarDP=73 GT:AD:DP:GQ:PL:SB 1/1:0,73,0:73:99:2417,219,0,2417,219,2417:0,0,33,40 +chrX 2654039 . G . . END=2654382 GT:DP:GQ:MIN_DP:PL 0/0:62:77:62:0,77,1261 +chrX 2654383 . G A, 529.64 . AS_QUALapprox=|537|0;AS_VarDP=18|20|0;BaseQRankSum=0.628;DP=40;MQRankSum=0.000;QUALapprox=537;RAW_GT_COUNT=0,1,0;RAW_MQandDP=144000,40;ReadPosRankSum=0.117;VarDP=38 GT:AD:DP:GQ:PL:SB 0/1:18,20,0:38:99:537,0,442,590,502,1092:4,14,9,11 +chrX 2654384 . T . . END=2654392 GT:DP:GQ:MIN_DP:PL 0/0:39:87:39:0,87,1305 +chrX 2654393 . GAAA G,GAA, 815.02 . AS_QUALapprox=|425|528|0;AS_VarDP=0|12|18|0;DP=47;QUALapprox=832;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;VarDP=30 GT:AD:DP:GQ:PL:SB 1/2:0,12,18,0:30:99:832,407,575,388,0,304,837,522,387,905:0,0,12,18 +chrX 2654397 . A . . END=2654887 GT:DP:GQ:MIN_DP:PL 0/0:68:97:68:0,97,1500 +chrX 2654888 . G A, 2361.06 . AS_QUALapprox=|2375|0;AS_VarDP=0|65|0;DP=66;QUALapprox=2375;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=65 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,65,0:65:99:0|1:2654888_G_A:2375,194,0,2375,194,2375:2654888:0,0,34,31 +chrX 2654889 . A . . END=2654909 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 2654910 . G A, 621.64 . AS_QUALapprox=|629|0;AS_VarDP=35|25|0;BaseQRankSum=0.892;DP=61;MQRankSum=0.000;QUALapprox=629;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=0.390;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:35,25,0:60:99:0|1:2654888_G_A:629,0,957,734,1031,1766:2654888:21,14,13,12 +chrX 2654911 . T . . END=2655297 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,112,1674 +chrX 2655298 . A G, 2074.06 . AS_QUALapprox=|2088|0;AS_VarDP=0|65|0;DP=65;QUALapprox=2088;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=65 GT:AD:DP:GQ:PL:SB 1/1:0,65,0:65:99:2088,194,0,2088,194,2088:0,0,28,37 +chrX 2655299 . T . . END=2655537 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,120,1800 +chrX 2655538 . C G, 980.64 . AS_QUALapprox=|988|0;AS_VarDP=34|37|0;BaseQRankSum=-0.129;DP=74;MQRankSum=0.000;QUALapprox=988;RAW_GT_COUNT=0,1,0;RAW_MQandDP=266400,74;ReadPosRankSum=-0.207;VarDP=71 GT:AD:DP:GQ:PL:SB 0/1:34,37,0:71:99:988,0,894,1090,1005,2095:17,17,19,18 +chrX 2655539 . T . . END=2655638 GT:DP:GQ:MIN_DP:PL 0/0:80:99:80:0,120,1800 +chrX 2655639 . C T, 1024.64 . AS_QUALapprox=|1032|0;AS_VarDP=35|39|0;BaseQRankSum=1.590;DP=75;MQRankSum=0.000;QUALapprox=1032;RAW_GT_COUNT=0,1,0;RAW_MQandDP=270000,75;ReadPosRankSum=-0.466;VarDP=74 GT:AD:DP:GQ:PL:SB 0/1:35,39,0:74:99:1032,0,835,1137,952,2088:16,19,17,22 +chrX 2655640 . C . . END=2656562 GT:DP:GQ:MIN_DP:PL 0/0:65:97:65:0,97,1641 +chrX 2656563 . T A, 885.64 . AS_QUALapprox=|893|0;AS_VarDP=24|34|0;BaseQRankSum=-2.390;DP=62;MQRankSum=0.000;QUALapprox=893;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=-0.008;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:24,34,0:58:99:893,0,650,965,752,1717:8,16,14,20 +chrX 2656564 . T . . END=2656934 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,110,1579 +chrX 2656935 . A G, 602.64 . AS_QUALapprox=|610|0;AS_VarDP=33|26|0;BaseQRankSum=-2.695;DP=61;MQRankSum=0.000;QUALapprox=610;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-0.130;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:33,26,0:59:99:610,0,940,709,1018,1727:15,18,17,9 +chrX 2656936 . C . . END=2657109 GT:DP:GQ:MIN_DP:PL 0/0:76:99:76:0,120,1800 +chrX 2657110 . G T, 940.64 . AS_QUALapprox=|948|0;AS_VarDP=29|38|0;BaseQRankSum=-1.586;DP=69;MQRankSum=0.000;QUALapprox=948;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=-0.614;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:29,38,0:67:99:948,0,722,1035,836,1871:13,16,20,18 +chrX 2657111 . C . . END=2657303 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 2657304 . C T, 1096.64 . AS_QUALapprox=|1104|0;AS_VarDP=31|39|0;BaseQRankSum=0.734;DP=75;MQRankSum=0.000;QUALapprox=1104;RAW_GT_COUNT=0,1,0;RAW_MQandDP=270000,75;ReadPosRankSum=0.509;VarDP=70 GT:AD:DP:GQ:PL:SB 0/1:31,39,0:70:99:1104,0,809,1198,926,2124:17,14,29,10 +chrX 2657305 . G . . END=2657564 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 2657565 . T A, 1972.06 . AS_QUALapprox=|1986|0;AS_VarDP=0|59|0;DP=64;QUALapprox=1986;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1986,177,0,1986,177,1986:0,0,23,36 +chrX 2657566 . T . . END=2657702 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 2657703 . G A, 1592.06 . AS_QUALapprox=|1606|0;AS_VarDP=0|48|0;DP=50;QUALapprox=1606;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=48 GT:AD:DP:GQ:PL:SB 1/1:0,48,0:48:99:1606,144,0,1606,144,1606:0,0,25,23 +chrX 2657704 . T . . END=2658358 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,109,1484 +chrX 2658359 . G A, 1836.06 . AS_QUALapprox=|1850|0;AS_VarDP=1|57|0;BaseQRankSum=-0.350;DP=58;MQRankSum=0.000;QUALapprox=1850;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;ReadPosRankSum=0.538;VarDP=58 GT:AD:DP:GQ:PL:SB 1/1:1,57,0:58:99:1850,139,0,1853,171,1885:1,0,32,25 +chrX 2658360 . T . . END=2658848 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,106,1735 +chrX 2658849 . C CT, 1471.03 . AS_QUALapprox=|1485|0;AS_VarDP=0|51|0;DP=62;QUALapprox=1485;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1485,153,0,1485,153,1485:0,0,24,27 +chrX 2658850 . T . . END=2658897 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,101,1490 +chrX 2658898 . CAA C, 1685.03 . AS_QUALapprox=|1699|0;AS_VarDP=1|47|0;BaseQRankSum=-0.650;DP=57;MQRankSum=0.000;QUALapprox=1699;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;ReadPosRankSum=1.155;VarDP=48 GT:AD:DP:GQ:PL:SB 1/1:1,47,0:48:99:1699,118,0,1702,141,1724:0,1,22,25 +chrX 2658901 . A . . END=2659027 GT:DP:GQ:MIN_DP:PL 0/0:55:78:55:0,78,1649 +chrX 2659028 . C CGAGA, 1614.60 . AS_QUALapprox=|1622|0;AS_VarDP=19|40|0;BaseQRankSum=-0.605;DP=61;MQRankSum=0.000;QUALapprox=1622;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=0.114;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:19,40,0:59:99:1622,0,667,1680,788,2467:8,11,15,25 +chrX 2659029 . G . . END=2659160 GT:DP:GQ:MIN_DP:PL 0/0:55:66:55:0,66,878 +chrX 2659161 . T . . END=2659161 GT:DP:GQ:MIN_DP:PL 0/0:26:0:26:0,0,586 +chrX 2659162 . C . . END=2659171 GT:DP:GQ:MIN_DP:PL 0/0:29:56:29:0,56,718 +chrX 2659172 . T . . END=2659172 GT:DP:GQ:MIN_DP:PL 0/0:23:19:23:0,19,620 +chrX 2659173 . T . . END=2659221 GT:DP:GQ:MIN_DP:PL 0/0:19:30:16:0,30,450 +chrX 2659222 . T . . END=2659224 GT:DP:GQ:MIN_DP:PL 0/0:14:7:14:0,7,376 +chrX 2659225 . C . . END=2659226 GT:DP:GQ:MIN_DP:PL 0/0:14:24:14:0,24,360 +chrX 2659227 . T . . END=2659227 GT:DP:GQ:MIN_DP:PL 0/0:13:4:13:0,4,372 +chrX 2659228 . C . . END=2659228 GT:DP:GQ:MIN_DP:PL 0/0:13:24:13:0,24,360 +chrX 2659229 . C . . END=2659229 GT:DP:GQ:MIN_DP:PL 0/0:13:4:13:0,4,362 +chrX 2659230 . T . . END=2659230 GT:DP:GQ:MIN_DP:PL 0/0:12:24:12:0,24,360 +chrX 2659231 . CTCTCCTCCTCCCTCCCCCCT C, 187.60 . AS_QUALapprox=|195|0;AS_VarDP=5|5|0;BaseQRankSum=0.765;DP=11;MQRankSum=0.000;QUALapprox=195;RAW_GT_COUNT=0,1,0;RAW_MQandDP=39600,11;ReadPosRankSum=0.464;VarDP=10 GT:AD:DP:GQ:PL:SB 0/1:5,5,0:10:99:195,0,195,210,210,420:0,5,0,5 +chrX 2659252 . T . . END=2659785 GT:DP:GQ:MIN_DP:PL 0/0:1:0:1:0,0,0 +chrX 2659786 . C . . END=2659789 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,223 +chrX 2659790 . C . . END=2659790 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,209 +chrX 2659791 . C . . END=2659794 GT:DP:GQ:MIN_DP:PL 0/0:10:24:9:0,24,258 +chrX 2659795 . C . . END=2659795 GT:DP:GQ:MIN_DP:PL 0/0:10:5:10:0,5,268 +chrX 2659796 . C . . END=2659797 GT:DP:GQ:MIN_DP:PL 0/0:11:30:11:0,30,348 +chrX 2659798 . C . . END=2659799 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,254 +chrX 2659800 . C . . END=2659800 GT:DP:GQ:MIN_DP:PL 0/0:11:33:11:0,33,332 +chrX 2659801 . A . . END=2659803 GT:DP:GQ:MIN_DP:PL 0/0:9:0:9:0,0,17 +chrX 2659804 . C . . END=2659805 GT:DP:GQ:MIN_DP:PL 0/0:12:36:12:0,36,356 +chrX 2659806 . T . . END=2659806 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,203 +chrX 2659807 . C . . END=2659810 GT:DP:GQ:MIN_DP:PL 0/0:13:33:13:0,33,336 +chrX 2659811 . T . . END=2659811 GT:DP:GQ:MIN_DP:PL 0/0:13:14:13:0,14,342 +chrX 2659812 . C . . END=2659818 GT:DP:GQ:MIN_DP:PL 0/0:13:25:12:0,25,383 +chrX 2659819 . T . . END=2659819 GT:DP:GQ:MIN_DP:PL 0/0:14:17:14:0,17,407 +chrX 2659820 . C . . END=2659824 GT:DP:GQ:MIN_DP:PL 0/0:16:22:12:0,22,348 +chrX 2659825 . A . . END=2659825 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,316 +chrX 2659826 . C . . END=2659830 GT:DP:GQ:MIN_DP:PL 0/0:15:39:13:0,39,432 +chrX 2659831 . T . . END=2659831 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,408 +chrX 2659832 . C . . END=2659835 GT:DP:GQ:MIN_DP:PL 0/0:19:40:19:0,40,557 +chrX 2659836 . T . . END=2659836 GT:DP:GQ:MIN_DP:PL 0/0:18:5:18:0,5,507 +chrX 2659837 . T . . END=2659840 GT:DP:GQ:MIN_DP:PL 0/0:17:42:17:0,42,630 +chrX 2659841 . T . . END=2659841 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,396 +chrX 2659842 . C . . END=2660060 GT:DP:GQ:MIN_DP:PL 0/0:16:20:13:0,20,382 +chrX 2660061 . G C, 682.64 . AS_QUALapprox=|690|0;AS_VarDP=18|25|0;BaseQRankSum=-1.973;DP=49;MQRankSum=0.000;QUALapprox=690;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=-1.724;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:18,25,0:43:99:690,0,496,744,572,1315:7,11,18,7 +chrX 2660062 . G . . END=2660243 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,104,1459 +chrX 2660244 . C T, 1712.06 . AS_QUALapprox=|1726|0;AS_VarDP=0|52|0;DP=56;QUALapprox=1726;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1726,156,0,1726,156,1726:0,0,27,25 +chrX 2660245 . T . . END=2660317 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 2660318 . T G, 829.64 . AS_QUALapprox=|837|0;AS_VarDP=20|31|0;BaseQRankSum=-1.152;DP=53;MQRankSum=0.000;QUALapprox=837;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=1.525;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:20,31,0:51:99:837,0,521,897,614,1511:12,8,14,17 +chrX 2660319 . G . . END=2660412 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,106,1517 +chrX 2660413 . A . . END=2660413 GT:DP:GQ:MIN_DP:PL 0/0:52:17:52:0,17,1218 +chrX 2660414 . C . . END=2660669 GT:DP:GQ:MIN_DP:PL 0/0:60:51:60:0,51,1165 +chrX 2660670 . T C, 779.64 . AS_QUALapprox=|787|0;AS_VarDP=30|23|0;BaseQRankSum=0.857;DP=59;MQRankSum=0.914;QUALapprox=787;RAW_GT_COUNT=0,1,0;RAW_MQandDP=211716,59;ReadPosRankSum=-0.997;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:30,23,0:53:99:0|1:2660670_T_C:787,0,1118,877,1187,2064:2660670:17,13,15,8 +chrX 2660671 . G . . END=2660685 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,112,1503 +chrX 2660686 . T G, 810.64 . AS_QUALapprox=|818|0;AS_VarDP=29|23|0;BaseQRankSum=2.460;DP=55;MQRankSum=0.929;QUALapprox=818;RAW_GT_COUNT=0,1,0;RAW_MQandDP=197316,55;ReadPosRankSum=-0.404;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,23,0:52:99:0|1:2660670_T_C:818,0,1081,905,1151,2055:2660670:16,13,16,7 +chrX 2660687 . T . . END=2661209 GT:DP:GQ:MIN_DP:PL 0/0:61:85:61:0,85,1405 +chrX 2661210 . C A, 812.64 . AS_QUALapprox=|820|0;AS_VarDP=23|31|0;BaseQRankSum=-0.027;DP=55;MQRankSum=-0.824;QUALapprox=820;RAW_GT_COUNT=0,1,0;RAW_MQandDP=196516,55;ReadPosRankSum=-0.123;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:23,31,0:54:99:820,0,598,889,690,1579:9,14,13,18 +chrX 2661211 . T . . END=2661255 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 2661256 . G C, 938.64 . AS_QUALapprox=|946|0;AS_VarDP=27|35|0;BaseQRankSum=-0.867;DP=62;MQRankSum=-0.846;QUALapprox=946;RAW_GT_COUNT=0,1,0;RAW_MQandDP=222100,62;ReadPosRankSum=0.270;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:27,35,0:62:99:946,0,708,1026,813,1839:14,13,16,19 +chrX 2661257 . C . . END=2661287 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 2661288 . C T, 727.64 . AS_QUALapprox=|735|0;AS_VarDP=34|27|0;BaseQRankSum=1.442;DP=61;MQRankSum=0.924;QUALapprox=735;RAW_GT_COUNT=0,1,0;RAW_MQandDP=218500,61;ReadPosRankSum=-0.523;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:34,27,0:61:99:735,0,928,837,1009,1846:17,17,18,9 +chrX 2661289 . G . . END=2661625 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,102,1662 +chrX 2661626 . C G, 791.64 . AS_QUALapprox=|799|0;AS_VarDP=23|30|0;BaseQRankSum=-1.320;DP=54;MQRankSum=0.000;QUALapprox=799;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=-2.541;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:23,30,0:53:99:799,0,606,868,695,1563:12,11,18,12 +chrX 2661627 . T . . END=2661763 GT:DP:GQ:MIN_DP:PL 0/0:53:97:53:0,97,1369 +chrX 2661764 . T C, 496.64 . AS_QUALapprox=|504|0;AS_VarDP=22|20|0;BaseQRankSum=0.509;DP=42;MQRankSum=0.000;QUALapprox=504;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151200,42;ReadPosRankSum=-0.806;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:22,20,0:42:99:504,0,539,569,599,1168:9,13,7,13 +chrX 2661765 . G . . END=2661847 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,99,1134 +chrX 2661848 . A C, 408.64 . AS_QUALapprox=|416|0;AS_VarDP=23|17|0;BaseQRankSum=-0.532;DP=41;MQRankSum=0.000;QUALapprox=416;RAW_GT_COUNT=0,1,0;RAW_MQandDP=144729,41;ReadPosRankSum=0.274;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:23,17,0:40:99:416,0,640,485,690,1175:12,11,6,11 +chrX 2661849 . G . . END=2662018 GT:DP:GQ:MIN_DP:PL 0/0:40:45:40:0,45,968 +chrX 2662019 . T . . END=2662019 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,910 +chrX 2662020 . G . . END=2662028 GT:DP:GQ:MIN_DP:PL 0/0:38:33:36:0,33,1003 +chrX 2662029 . A T, 312.64 . AS_QUALapprox=|320|0;AS_VarDP=13|14|0;BaseQRankSum=-0.568;DP=28;MQRankSum=-1.336;QUALapprox=320;RAW_GT_COUNT=0,1,0;RAW_MQandDP=96800,28;ReadPosRankSum=1.117;VarDP=27 GT:AD:DP:GQ:PL:SB 0/1:13,14,0:27:99:320,0,431,359,471,831:8,5,13,1 +chrX 2662030 . C . . END=2662031 GT:DP:GQ:MIN_DP:PL 0/0:24:57:24:0,57,855 +chrX 2662032 . CA C,CAAAAA, 645.02 . AS_QUALapprox=|55|567|0;AS_VarDP=0|6|17|0;DP=47;QUALapprox=662;RAW_GT_COUNT=0,0,1;RAW_MQandDP=163536,47;VarDP=23 GT:AD:DP:GQ:PL:SB 1/2:0,6,17,0:23:95:662,607,834,95,0,178,717,745,191,884:0,0,15,8 +chrX 2662034 . A . . END=2662054 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,105,1665 +chrX 2662055 . G . . END=2662055 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1324 +chrX 2662056 . A . . END=2662392 GT:DP:GQ:MIN_DP:PL 0/0:63:52:63:0,52,1424 +chrX 2662393 . A G, 634.64 . AS_QUALapprox=|642|0;AS_VarDP=21|23|0;BaseQRankSum=1.084;DP=46;MQRankSum=0.000;QUALapprox=642;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=-0.893;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:21,23,0:44:99:642,0,568,705,637,1342:11,10,10,13 +chrX 2662394 . C . . END=2662547 GT:DP:GQ:MIN_DP:PL 0/0:50:98:50:0,98,1403 +chrX 2662548 . T C, 570.64 . AS_QUALapprox=|578|0;AS_VarDP=31|24|0;BaseQRankSum=-0.915;DP=58;MQRankSum=0.000;QUALapprox=578;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-1.265;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:31,24,0:55:99:578,0,863,671,934,1605:20,11,16,8 +chrX 2662549 . G . . END=2662625 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,103,1459 +chrX 2662626 . C CA, 301.60 . AS_QUALapprox=|309|0;AS_VarDP=21|18|0;BaseQRankSum=0.599;DP=53;MQRankSum=-1.029;QUALapprox=309;RAW_GT_COUNT=0,1,0;RAW_MQandDP=188800,53;ReadPosRankSum=-0.944;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:21,18,0:39:99:309,0,388,372,442,814:11,10,8,10 +chrX 2662627 . A . . END=2662828 GT:DP:GQ:MIN_DP:PL 0/0:64:58:64:0,58,1507 +chrX 2662829 . G A, 772.64 . AS_QUALapprox=|780|0;AS_VarDP=33|28|0;BaseQRankSum=2.030;DP=62;MQRankSum=0.000;QUALapprox=780;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=0.782;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:33,28,0:61:99:780,0,894,879,978,1857:16,17,15,13 +chrX 2662830 . C . . END=2663628 GT:DP:GQ:MIN_DP:PL 0/0:59:86:59:0,86,1334 +chrX 2663629 . A G, 1915.06 . AS_QUALapprox=|1929|0;AS_VarDP=0|61|0;DP=62;QUALapprox=1929;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=61 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:1929,182,0,1929,182,1929:0,0,37,24 +chrX 2663630 . C . . END=2663786 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 2663787 . C T, 1791.06 . AS_QUALapprox=|1805|0;AS_VarDP=0|56|0;DP=58;QUALapprox=1805;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1805,168,0,1805,168,1805:0,0,26,30 +chrX 2663788 . C . . END=2663904 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,110,1633 +chrX 2663905 . C A, 1638.06 . AS_QUALapprox=|1652|0;AS_VarDP=0|50|0;DP=51;QUALapprox=1652;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1652,150,0,1652,150,1652:0,0,28,22 +chrX 2663906 . A . . END=2663958 GT:DP:GQ:MIN_DP:PL 0/0:49:85:49:0,85,1449 +chrX 2663959 . T TAA, 1416.03 . AS_QUALapprox=|1430|0;AS_VarDP=0|46|0;DP=63;QUALapprox=1430;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223297,63;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1430,137,0,1430,137,1430:0,0,19,27 +chrX 2663960 . A . . END=2665159 GT:DP:GQ:MIN_DP:PL 0/0:56:33:44:0,33,1105 +chrX 2665160 . GCCTT G, 928.03 . AS_QUALapprox=|942|0;AS_VarDP=0|22|0;DP=50;QUALapprox=942;RAW_GT_COUNT=0,0,1;RAW_MQandDP=179316,50;VarDP=22 GT:AD:DP:GQ:PL:SB 1/1:0,22,0:22:67:942,67,0,942,67,942:0,0,12,10 +chrX 2665165 . C . . END=2665211 GT:DP:GQ:MIN_DP:PL 0/0:54:84:54:0,84,1260 +chrX 2665212 . T . . END=2665212 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,1185 +chrX 2665213 . C . . END=2665217 GT:DP:GQ:MIN_DP:PL 0/0:50:63:50:0,63,1364 +chrX 2665218 . A . . END=2665218 GT:DP:GQ:MIN_DP:PL 0/0:45:1:45:0,1,1035 +chrX 2665219 . T . . END=2665272 GT:DP:GQ:MIN_DP:PL 0/0:44:21:37:0,21,815 +chrX 2665273 . T TTC, 1935.03 . AS_QUALapprox=|1949|0;AS_VarDP=0|44|0;DP=46;QUALapprox=1949;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162961,46;VarDP=44 GT:AD:DP:GQ:PL:SB 1/1:0,44,0:44:99:1949,132,0,1949,132,1949:0,0,13,31 +chrX 2665274 . T . . END=2666023 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,100,1470 +chrX 2666024 . A G, 2180.06 . AS_QUALapprox=|2194|0;AS_VarDP=0|65|0;DP=68;QUALapprox=2194;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;VarDP=65 GT:AD:DP:GQ:PL:SB 1/1:0,65,0:65:99:2194,195,0,2194,195,2194:0,0,36,29 +chrX 2666025 . T . . END=2666513 GT:DP:GQ:MIN_DP:PL 0/0:54:24:54:0,24,1319 +chrX 2666514 . C . . END=2666514 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1036 +chrX 2666515 . A . . END=2667073 GT:DP:GQ:MIN_DP:PL 0/0:63:98:63:0,98,1528 +chrX 2667074 . C T, 1729.06 . AS_QUALapprox=|1743|0;AS_VarDP=0|51|0;DP=55;QUALapprox=1743;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1743,153,0,1743,153,1743:0,0,18,33 +chrX 2667075 . G . . END=2667288 GT:DP:GQ:MIN_DP:PL 0/0:52:66:52:0,66,990 +chrX 2667289 . G . . END=2667289 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,1142 +chrX 2667290 . A . . END=2667937 GT:DP:GQ:MIN_DP:PL 0/0:38:37:37:0,37,1015 +chrX 2667938 . G A, 1698.06 . AS_QUALapprox=|1712|0;AS_VarDP=2|52|0;BaseQRankSum=3.679;DP=56;MQRankSum=0.000;QUALapprox=1712;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;ReadPosRankSum=1.146;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:2,52,0:54:99:1712,128,0,1718,156,1746:1,1,28,24 +chrX 2667939 . G . . END=2668318 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,100,1346 +chrX 2668319 . C T, 1913.06 . AS_QUALapprox=|1927|0;AS_VarDP=1|58|0;BaseQRankSum=2.778;DP=61;MQRankSum=0.000;QUALapprox=1927;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;ReadPosRankSum=0.852;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:1,58,0:59:99:1927,167,0,1929,174,1936:1,0,36,22 +chrX 2668320 . C . . END=2668581 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 2668582 . G A, 969.64 . AS_QUALapprox=|977|0;AS_VarDP=35|36|0;BaseQRankSum=0.115;DP=72;MQRankSum=0.000;QUALapprox=977;RAW_GT_COUNT=0,1,0;RAW_MQandDP=259200,72;ReadPosRankSum=1.530;VarDP=71 GT:AD:DP:GQ:PL:SB 0/1:35,36,0:71:99:977,0,928,1081,1036,2118:16,19,14,22 +chrX 2668583 . G . . END=2668606 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 2668607 . C A, 1115.64 . AS_QUALapprox=|1123|0;AS_VarDP=32|42|0;BaseQRankSum=-1.214;DP=76;MQRankSum=-0.846;QUALapprox=1123;RAW_GT_COUNT=0,1,0;RAW_MQandDP=271600,76;ReadPosRankSum=-0.469;VarDP=74 GT:AD:DP:GQ:PL:SB 0/1:32,42,0:74:99:1123,0,846,1220,972,2192:15,17,18,24 +chrX 2668608 . A . . END=2668620 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 2668621 . AAG A, 1316.60 . AS_QUALapprox=|1324|0;AS_VarDP=32|35|0;BaseQRankSum=-1.029;DP=75;MQRankSum=0.000;QUALapprox=1324;RAW_GT_COUNT=0,1,0;RAW_MQandDP=268000,75;ReadPosRankSum=-0.347;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:32,35,0:67:99:1324,0,1216,1420,1321,2741:18,14,16,19 +chrX 2668624 . A . . END=2668675 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 2668676 . C T, 897.64 . AS_QUALapprox=|905|0;AS_VarDP=34|33|0;BaseQRankSum=1.517;DP=69;MQRankSum=0.000;QUALapprox=905;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=-1.073;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:34,33,0:67:99:905,0,874,1007,973,1980:18,16,18,15 +chrX 2668677 . C . . END=2669003 GT:DP:GQ:MIN_DP:PL 0/0:64:94:64:0,94,1523 +chrX 2669004 . G C, 600.64 . AS_QUALapprox=|608|0;AS_VarDP=26|24|0;BaseQRankSum=-0.144;DP=51;MQRankSum=0.000;QUALapprox=608;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-0.962;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:26,24,0:50:99:608,0,679,685,751,1436:14,12,8,16 +chrX 2669005 . G . . END=2669212 GT:DP:GQ:MIN_DP:PL 0/0:56:92:56:0,92,1444 +chrX 2669213 . G C, 723.64 . AS_QUALapprox=|731|0;AS_VarDP=25|26|0;BaseQRankSum=0.566;DP=52;MQRankSum=0.000;QUALapprox=731;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=-0.358;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:25,26,0:51:99:731,0,671,806,749,1555:12,13,16,10 +chrX 2669214 . T . . END=2669458 GT:DP:GQ:MIN_DP:PL 0/0:54:69:54:0,69,1548 +chrX 2669459 . A C, 679.64 . AS_QUALapprox=|687|0;AS_VarDP=29|28|0;BaseQRankSum=-1.821;DP=57;MQRankSum=0.000;QUALapprox=687;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-0.431;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:29,28,0:57:99:687,0,782,774,866,1640:16,13,14,14 +chrX 2669460 . T . . END=2670186 GT:DP:GQ:MIN_DP:PL 0/0:56:73:56:0,73,1425 +chrX 2670187 . T A, 601.64 . AS_QUALapprox=|609|0;AS_VarDP=31|24|0;BaseQRankSum=-0.796;DP=57;MQRankSum=0.000;QUALapprox=609;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=0.807;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:31,24,0:55:99:609,0,862,702,934,1636:18,13,13,11 +chrX 2670188 . C . . END=2670569 GT:DP:GQ:MIN_DP:PL 0/0:52:44:52:0,44,1250 +chrX 2670570 . CT C, 141.60 . AS_QUALapprox=|149|0;AS_VarDP=8|11|0;BaseQRankSum=-0.525;DP=48;MQRankSum=0.000;QUALapprox=149;RAW_GT_COUNT=0,1,0;RAW_MQandDP=168800,48;ReadPosRankSum=-0.661;VarDP=19 GT:AD:DP:GQ:PL:SB 0/1:8,11,0:19:82:149,0,82,172,115,287:6,2,3,8 +chrX 2670572 . T . . END=2670593 GT:DP:GQ:MIN_DP:PL 0/0:62:66:62:0,66,990 +chrX 2670594 . G . . END=2670594 GT:DP:GQ:MIN_DP:PL 0/0:33:1:33:0,1,870 +chrX 2670595 . A . . END=2670597 GT:DP:GQ:MIN_DP:PL 0/0:34:42:34:0,42,952 +chrX 2670598 . C . . END=2670598 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,849 +chrX 2670599 . A . . END=2670717 GT:DP:GQ:MIN_DP:PL 0/0:46:46:46:0,46,919 +chrX 2670718 . G A, 466.64 . AS_QUALapprox=|474|0;AS_VarDP=30|19|0;BaseQRankSum=0.044;DP=50;MQRankSum=0.000;QUALapprox=474;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=2.453;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:30,19,0:49:99:474,0,805,563,862,1425:16,14,9,10 +chrX 2670719 . T . . END=2670877 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,119,1623 +chrX 2670878 . T G, 768.64 . AS_QUALapprox=|776|0;AS_VarDP=40|33|0;BaseQRankSum=-1.814;DP=73;MQRankSum=0.000;QUALapprox=776;RAW_GT_COUNT=0,1,0;RAW_MQandDP=262800,73;ReadPosRankSum=-1.120;VarDP=73 GT:AD:DP:GQ:PL:SB 0/1:40,33,0:73:99:776,0,1071,896,1170,2067:22,18,17,16 +chrX 2670879 . T . . END=2671002 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 2671003 . G A, 647.64 . AS_QUALapprox=|655|0;AS_VarDP=31|27|0;BaseQRankSum=-0.470;DP=60;MQRankSum=0.000;QUALapprox=655;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=-0.577;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:31,27,0:58:99:655,0,824,748,904,1651:16,15,14,13 +chrX 2671004 . T . . END=2671102 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 2671103 . C A, 1092.64 . AS_QUALapprox=|1100|0;AS_VarDP=30|39|0;BaseQRankSum=1.877;DP=72;MQRankSum=0.000;QUALapprox=1100;RAW_GT_COUNT=0,1,0;RAW_MQandDP=259200,72;ReadPosRankSum=-1.453;VarDP=69 GT:AD:DP:GQ:PL:SB 0/1:30,39,0:69:99:1100,0,701,1188,818,2007:17,13,21,18 +chrX 2671104 . A . . END=2671134 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 2671135 . G A, 1240.64 . AS_QUALapprox=|1248|0;AS_VarDP=35|35|0;BaseQRankSum=0.567;DP=72;MQRankSum=0.000;QUALapprox=1248;RAW_GT_COUNT=0,1,0;RAW_MQandDP=259200,72;ReadPosRankSum=0.345;VarDP=70 GT:AD:DP:GQ:PL:SB 0/1:35,35,0:70:99:1248,0,865,1352,970,2322:21,14,20,15 +chrX 2671136 . C . . END=2671140 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 2671141 . G A, 822.64 . AS_QUALapprox=|830|0;AS_VarDP=37|32|0;BaseQRankSum=1.066;DP=71;MQRankSum=0.000;QUALapprox=830;RAW_GT_COUNT=0,1,0;RAW_MQandDP=255600,71;ReadPosRankSum=-0.433;VarDP=69 GT:AD:DP:GQ:PL:SB 0/1:37,32,0:69:99:830,0,1327,941,1423,2364:24,13,19,13 +chrX 2671142 . A . . END=2671164 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 2671165 . CA C, 717.60 . AS_QUALapprox=|725|0;AS_VarDP=30|29|0;BaseQRankSum=-1.825;DP=67;MQRankSum=0.000;QUALapprox=725;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=-0.379;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:30,29,0:59:99:725,0,749,815,836,1651:15,15,17,12 +chrX 2671167 . A . . END=2671219 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 2671220 . G A, 696.64 . AS_QUALapprox=|704|0;AS_VarDP=38|27|0;BaseQRankSum=0.596;DP=68;MQRankSum=0.000;QUALapprox=704;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=-0.300;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:38,27,0:65:99:704,0,1003,818,1084,1902:20,18,15,12 +chrX 2671221 . G . . END=2671230 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 2671231 . A G, 702.64 . AS_QUALapprox=|710|0;AS_VarDP=36|30|0;BaseQRankSum=-2.928;DP=69;MQRankSum=0.000;QUALapprox=710;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=-1.662;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:36,30,0:66:99:710,0,1034,818,1123,1942:20,16,17,13 +chrX 2671232 . T . . END=2671245 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 2671246 . C A, 654.64 . AS_QUALapprox=|662|0;AS_VarDP=37|29|0;BaseQRankSum=-1.497;DP=69;MQRankSum=0.000;QUALapprox=662;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=-0.743;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:37,29,0:66:99:662,0,1001,773,1087,1860:19,18,17,12 +chrX 2671247 . C . . END=2671415 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 2671416 . A G, 573.64 . AS_QUALapprox=|581|0;AS_VarDP=38|23|0;BaseQRankSum=1.170;DP=62;MQRankSum=0.000;QUALapprox=581;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=-0.007;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:38,23,0:61:99:581,0,1055,696,1124,1820:18,20,7,16 +chrX 2671417 . A . . END=2671475 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 2671476 . A G, 436.64 . AS_QUALapprox=|444|0;AS_VarDP=34|20|0;BaseQRankSum=-1.379;DP=56;MQRankSum=0.000;QUALapprox=444;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=0.251;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:34,20,0:54:99:444,0,956,545,1015,1560:17,17,10,10 +chrX 2671477 . T . . END=2671564 GT:DP:GQ:MIN_DP:PL 0/0:50:76:50:0,76,1374 +chrX 2671565 . C CTTTTT, 417.60 . AS_QUALapprox=|425|0;AS_VarDP=19|12|0;BaseQRankSum=-0.820;DP=42;MQRankSum=0.000;QUALapprox=425;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151200,42;ReadPosRankSum=0.325;VarDP=31 GT:AD:DP:GQ:PL:SB 0/1:19,12,0:31:99:425,0,685,483,721,1204:9,10,5,7 +chrX 2671566 . T . . END=2671580 GT:DP:GQ:MIN_DP:PL 0/0:46:66:46:0,66,990 +chrX 2671581 . G . . END=2671584 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,624 +chrX 2671585 . T . . END=2671587 GT:DP:GQ:MIN_DP:PL 0/0:32:47:32:0,47,943 +chrX 2671588 . A . . END=2671588 GT:DP:GQ:MIN_DP:PL 0/0:31:9:31:0,9,870 +chrX 2671589 . G . . END=2671664 GT:DP:GQ:MIN_DP:PL 0/0:39:58:39:0,58,929 +chrX 2671665 . C T, 615.64 . AS_QUALapprox=|623|0;AS_VarDP=26|23|0;BaseQRankSum=2.282;DP=53;MQRankSum=0.000;QUALapprox=623;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=0.581;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:26,23,0:49:99:623,0,631,700,700,1400:10,16,12,11 +chrX 2671666 . G . . END=2671723 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 2671724 . G A, 587.64 . AS_QUALapprox=|595|0;AS_VarDP=28|27|0;BaseQRankSum=-1.761;DP=56;MQRankSum=0.000;QUALapprox=595;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-0.564;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:28,27,0:55:99:595,0,720,678,800,1478:15,13,12,15 +chrX 2671725 . G . . END=2671792 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,112,1310 +chrX 2671793 . T C, 1400.06 . AS_QUALapprox=|1414|0;AS_VarDP=0|44|0;DP=46;QUALapprox=1414;RAW_GT_COUNT=0,0,1;RAW_MQandDP=163600,46;VarDP=44 GT:AD:DP:GQ:PL:SB 1/1:0,44,0:44:99:1414,132,0,1414,132,1414:0,0,16,28 +chrX 2671794 . C . . END=2672073 GT:DP:GQ:MIN_DP:PL 0/0:47:98:47:0,98,1334 +chrX 2672074 . C T, 1565.06 . AS_QUALapprox=|1579|0;AS_VarDP=2|49|0;BaseQRankSum=3.057;DP=56;MQRankSum=0.000;QUALapprox=1579;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;ReadPosRankSum=0.413;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:2,49,0:51:99:1579,119,0,1584,147,1613:1,1,27,22 +chrX 2672075 . T . . END=2672140 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 2672141 . A C, 2310.06 . AS_QUALapprox=|2324|0;AS_VarDP=2|55|0;BaseQRankSum=3.568;DP=58;MQRankSum=0.000;QUALapprox=2324;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;ReadPosRankSum=-0.737;VarDP=57 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:2,55,0:57:82:0|1:2672141_A_C:2324,82,0,2330,166,2414:2672141:1,1,28,27 +chrX 2672142 . A . . END=2672147 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 2672148 . C T, 2310.06 . AS_QUALapprox=|2324|0;AS_VarDP=2|55|0;BaseQRankSum=2.955;DP=58;MQRankSum=0.000;QUALapprox=2324;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;ReadPosRankSum=-0.160;VarDP=57 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:2,55,0:57:82:0|1:2672141_A_C:2324,82,0,2330,166,2414:2672141:1,1,29,26 +chrX 2672149 . C . . END=2672516 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,112,1663 +chrX 2672517 . G A, 2444.06 . AS_QUALapprox=|2458|0;AS_VarDP=0|56|0;DP=57;QUALapprox=2458;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,56,0:56:99:0|1:2672517_G_A:2458,169,0,2458,169,2458:2672517:0,0,33,23 +chrX 2672518 . G . . END=2672532 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 2672533 . A G, 2538.06 . AS_QUALapprox=|2552|0;AS_VarDP=0|59|0;DP=60;QUALapprox=2552;RAW_GT_COUNT=0,0,1;RAW_MQandDP=215104,60;VarDP=59 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,59,0:59:99:0|1:2672517_G_A:2552,178,0,2552,178,2552:2672517:0,0,32,27 +chrX 2672534 . C . . END=2672564 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 2672565 . A C, 1892.06 . AS_QUALapprox=|1906|0;AS_VarDP=3|61|0;BaseQRankSum=3.509;DP=66;MQRankSum=-0.148;QUALapprox=1906;RAW_GT_COUNT=0,0,1;RAW_MQandDP=236704,66;ReadPosRankSum=0.731;VarDP=64 GT:AD:DP:GQ:PL:SB 1/1:3,61,0:64:78:1906,78,0,1915,183,2020:1,2,35,26 +chrX 2672566 . G . . END=2673087 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 2673088 . G A, 674.64 . AS_QUALapprox=|682|0;AS_VarDP=31|26|0;BaseQRankSum=0.318;DP=60;MQRankSum=0.000;QUALapprox=682;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=-1.699;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:31,26,0:57:99:682,0,836,776,914,1690:13,18,11,15 +chrX 2673089 . T . . END=2673550 GT:DP:GQ:MIN_DP:PL 0/0:60:81:60:0,81,1484 +chrX 2673551 . A T, 888.64 . AS_QUALapprox=|896|0;AS_VarDP=33|32|0;BaseQRankSum=1.764;DP=65;MQRankSum=0.000;QUALapprox=896;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=0.414;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:33,32,0:65:99:896,0,867,995,963,1958:16,17,18,14 +chrX 2673552 . A . . END=2673846 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,106,1392 +chrX 2673847 . T A, 596.64 . AS_QUALapprox=|604|0;AS_VarDP=32|23|0;BaseQRankSum=-0.411;DP=58;MQRankSum=0.000;QUALapprox=604;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=0.077;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:32,23,0:55:99:604,0,917,700,986,1686:14,18,13,10 +chrX 2673848 . T . . END=2674053 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 2674054 . CGATCCTGCCCTCCCTGTCATCTCGGT C, 1156.60 . AS_QUALapprox=|1164|0;AS_VarDP=28|30|0;BaseQRankSum=-0.369;DP=63;MQRankSum=0.000;QUALapprox=1164;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=-0.899;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:28,30,0:58:99:1164,0,1085,1248,1176,2424:14,14,11,19 +chrX 2674081 . G . . END=2674148 GT:DP:GQ:MIN_DP:PL 0/0:44:83:44:0,83,1081 +chrX 2674149 . A ATT, 583.60 . AS_QUALapprox=|591|0;AS_VarDP=15|20|0;BaseQRankSum=0.660;DP=44;MQRankSum=0.000;QUALapprox=591;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=-1.035;VarDP=35 GT:AD:DP:GQ:PL:SB 0/1:15,20,0:35:99:591,0,421,637,481,1118:7,8,8,12 +chrX 2674150 . T . . END=2674281 GT:DP:GQ:MIN_DP:PL 0/0:59:67:59:0,67,1408 +chrX 2674282 . GGTT G, 970.60 . AS_QUALapprox=|978|0;AS_VarDP=24|25|0;BaseQRankSum=1.212;DP=58;MQRankSum=0.000;QUALapprox=978;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-0.731;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:24,25,0:49:99:978,0,920,1050,995,2045:15,9,13,12 +chrX 2674286 . G . . END=2674590 GT:DP:GQ:MIN_DP:PL 0/0:56:76:56:0,76,1404 +chrX 2674591 . C T, 669.64 . AS_QUALapprox=|677|0;AS_VarDP=29|26|0;BaseQRankSum=-0.870;DP=59;MQRankSum=0.983;QUALapprox=677;RAW_GT_COUNT=0,1,0;RAW_MQandDP=209329,59;ReadPosRankSum=-0.953;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:29,26,0:55:99:677,0,795,764,873,1637:9,20,12,14 +chrX 2674592 . G . . END=2674781 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 2674782 . C T, 657.64 . AS_QUALapprox=|665|0;AS_VarDP=32|27|0;BaseQRankSum=-0.420;DP=61;MQRankSum=-1.055;QUALapprox=665;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216576,61;ReadPosRankSum=0.654;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:32,27,0:59:99:665,0,845,761,926,1687:18,14,14,13 +chrX 2674783 . G . . END=2675037 GT:DP:GQ:MIN_DP:PL 0/0:49:41:49:0,41,1042 +chrX 2675038 . C . . END=2675038 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,978 +chrX 2675039 . A . . END=2675040 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,111,1665 +chrX 2675041 . G . . END=2675041 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,997 +chrX 2675042 . A . . END=2675048 GT:DP:GQ:MIN_DP:PL 0/0:38:47:38:0,47,1017 +chrX 2675049 . C . . END=2675050 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,824 +chrX 2675051 . C . . END=2675052 GT:DP:GQ:MIN_DP:PL 0/0:39:74:39:0,74,1060 +chrX 2675053 . A . . END=2675055 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,779 +chrX 2675056 . T . . END=2675056 GT:DP:GQ:MIN_DP:PL 0/0:37:57:37:0,57,1007 +chrX 2675057 . CAA C, 194.60 . AS_QUALapprox=|202|0;AS_VarDP=9|9|0;BaseQRankSum=-0.660;DP=45;MQRankSum=-0.167;QUALapprox=202;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151357,45;ReadPosRankSum=1.231;VarDP=18 GT:AD:DP:GQ:PL:SB 0/1:9,9,0:18:99:202,0,135,228,162,391:1,8,7,2 +chrX 2675060 . A . . END=2675080 GT:DP:GQ:MIN_DP:PL 0/0:52:72:52:0,72,1575 +chrX 2675081 . A . . END=2675081 GT:DP:GQ:MIN_DP:PL 0/0:52:0:52:0,0,1330 +chrX 2675082 . A . . END=2675082 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 2675083 . G . . END=2675083 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,1281 +chrX 2675084 . A . . END=2675429 GT:DP:GQ:MIN_DP:PL 0/0:50:75:50:0,75,1354 +chrX 2675430 . C G, 636.64 . AS_QUALapprox=|644|0;AS_VarDP=26|24|0;BaseQRankSum=-0.949;DP=52;MQRankSum=0.000;QUALapprox=644;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=-1.233;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:26,24,0:50:99:644,0,733,722,806,1528:10,16,19,5 +chrX 2675431 . T . . END=2675572 GT:DP:GQ:MIN_DP:PL 0/0:36:38:36:0,38,1036 +chrX 2675573 . C . . END=2675577 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,645 +chrX 2675578 . CTTTTT C,CTTT,CTTTTTTTTT, 400.02 . AS_QUALapprox=|95|0|355|0;AS_VarDP=1|3|0|9|0;BaseQRankSum=-0.385;DP=35;MQRankSum=-0.611;QUALapprox=417;RAW_GT_COUNT=0,0,1;RAW_MQandDP=119217,35;ReadPosRankSum=-0.385;VarDP=13 GT:AD:DP:GQ:PL:SB 1/3:1,3,0,9,0:13:62:417,322,459,471,510,1084,62,0,150,78,439,470,630,117,586:0,1,3,9 +chrX 2675584 . T . . END=2675611 GT:DP:GQ:MIN_DP:PL 0/0:34:39:29:0,39,585 +chrX 2675612 . G . . END=2675615 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,1058 +chrX 2675616 . T . . END=2675616 GT:DP:GQ:MIN_DP:PL 0/0:43:95:43:0,95,1415 +chrX 2675617 . G . . END=2675617 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,1136 +chrX 2675618 . G . . END=2675711 GT:DP:GQ:MIN_DP:PL 0/0:44:86:44:0,86,1256 +chrX 2675712 . A G, 576.64 . AS_QUALapprox=|584|0;AS_VarDP=21|21|0;BaseQRankSum=1.605;DP=44;MQRankSum=0.000;QUALapprox=584;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=-1.863;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:21,21,0:42:99:584,0,529,647,592,1239:9,12,9,12 +chrX 2675713 . C . . END=2675969 GT:DP:GQ:MIN_DP:PL 0/0:55:82:55:0,82,1218 +chrX 2675970 . C A, 941.64 . AS_QUALapprox=|949|0;AS_VarDP=29|35|0;BaseQRankSum=-1.235;DP=69;MQRankSum=0.000;QUALapprox=949;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=0.115;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:29,35,0:64:99:949,0,796,1036,901,1937:13,16,21,14 +chrX 2675971 . C . . END=2678515 GT:DP:GQ:MIN_DP:PL 0/0:64:81:64:0,81,1361 +chrX 2678516 . G A, 1788.06 . AS_QUALapprox=|1802|0;AS_VarDP=0|53|0;DP=55;QUALapprox=1802;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1802,159,0,1802,159,1802:0,0,28,25 +chrX 2678517 . C . . END=2681158 GT:DP:GQ:MIN_DP:PL 0/0:61:66:61:0,66,1463 +chrX 2681159 . A . . END=2681159 GT:DP:GQ:MIN_DP:PL 0/0:54:3:54:0,3,1288 +chrX 2681160 . C . . END=2683897 GT:DP:GQ:MIN_DP:PL 0/0:28:28:26:0,28,741 +chrX 2683898 . T . . END=2683899 GT:DP:GQ:MIN_DP:PL 0/0:29:0:29:0,0,715 +chrX 2683900 . A . . END=2683927 GT:DP:GQ:MIN_DP:PL 0/0:32:36:32:0,36,540 +chrX 2683928 . G . . END=2683928 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,909 +chrX 2683929 . C . . END=2688380 GT:DP:GQ:MIN_DP:PL 0/0:65:42:65:0,42,1052 +chrX 2688381 . C CT, 947.03 . AS_QUALapprox=|961|0;AS_VarDP=0|42|0;DP=56;QUALapprox=961;RAW_GT_COUNT=0,0,1;RAW_MQandDP=191865,56;VarDP=42 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,42,0:42:99:0|1:2688381_C_CT:961,125,0,961,125,961:2688381:0,0,28,14 +chrX 2688382 . T . . END=2688399 GT:DP:GQ:MIN_DP:PL 0/0:59:37:55:0,37,1134 +chrX 2688400 . A . . END=2688401 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1285 +chrX 2688402 . A . . END=2689242 GT:DP:GQ:MIN_DP:PL 0/0:52:45:52:0,45,1210 +chrX 2689243 . G C, 600.64 . AS_QUALapprox=|608|0;AS_VarDP=31|23|0;BaseQRankSum=0.934;DP=56;MQRankSum=0.000;QUALapprox=608;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=0.018;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:31,23,0:54:99:608,0,825,700,894,1594:14,17,11,12 +chrX 2689244 . G . . END=2689711 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,115,1800 +chrX 2689712 . C CT, 1553.03 . AS_QUALapprox=|1567|0;AS_VarDP=0|55|0;DP=64;QUALapprox=1567;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1567,165,0,1567,165,1567:0,0,35,20 +chrX 2689713 . T . . END=2690093 GT:DP:GQ:MIN_DP:PL 0/0:68:36:65:0,36,1800 +chrX 2690094 . G A, 1041.64 . AS_QUALapprox=|1049|0;AS_VarDP=28|36|0;BaseQRankSum=1.703;DP=66;MQRankSum=0.000;QUALapprox=1049;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=-2.146;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:28,36,0:64:99:1049,0,738,1133,847,1980:14,14,20,16 +chrX 2690095 . G . . END=2690657 GT:DP:GQ:MIN_DP:PL 0/0:54:53:54:0,53,972 +chrX 2690658 . G . . END=2690658 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,119 +chrX 2690659 . G . . END=2690680 GT:DP:GQ:MIN_DP:PL 0/0:29:47:29:0,47,744 +chrX 2690681 . G . . END=2690681 GT:DP:GQ:MIN_DP:PL 0/0:26:0:26:0,0,676 +chrX 2690682 . G . . END=2690685 GT:DP:GQ:MIN_DP:PL 0/0:26:69:26:0,69,1035 +chrX 2690686 . C . . END=2690692 GT:DP:GQ:MIN_DP:PL 0/0:26:0:26:0,0,152 +chrX 2690693 . T . . END=2690714 GT:DP:GQ:MIN_DP:PL 0/0:22:22:20:0,22,581 +chrX 2690715 . C . . END=2690715 GT:DP:GQ:MIN_DP:PL 0/0:18:0:18:0,0,277 +chrX 2690716 . G . . END=2690718 GT:DP:GQ:MIN_DP:PL 0/0:16:48:16:0,48,506 +chrX 2690719 . T . . END=2690719 GT:DP:GQ:MIN_DP:PL 0/0:17:0:17:0,0,412 +chrX 2690720 . C . . END=2690720 GT:DP:GQ:MIN_DP:PL 0/0:16:48:16:0,48,496 +chrX 2690721 . G . . END=2690721 GT:DP:GQ:MIN_DP:PL 0/0:17:0:17:0,0,422 +chrX 2690722 . C . . END=2690729 GT:DP:GQ:MIN_DP:PL 0/0:19:39:18:0,39,585 +chrX 2690730 . G . . END=2690732 GT:DP:GQ:MIN_DP:PL 0/0:19:0:19:0,0,422 +chrX 2690733 . G . . END=2690765 GT:DP:GQ:MIN_DP:PL 0/0:15:28:12:0,28,397 +chrX 2690766 . A . . END=2690766 GT:DP:GQ:MIN_DP:PL 0/0:14:7:14:0,7,366 +chrX 2690767 . C . . END=2690788 GT:DP:GQ:MIN_DP:PL 0/0:16:20:15:0,20,411 +chrX 2690789 . A . . END=2690789 GT:DP:GQ:MIN_DP:PL 0/0:10:16:10:0,16,289 +chrX 2690790 . G . . END=2690791 GT:DP:GQ:MIN_DP:PL 0/0:10:27:9:0,27,293 +chrX 2690792 . T . . END=2690792 GT:DP:GQ:MIN_DP:PL 0/0:10:16:10:0,16,248 +chrX 2690793 . G . . END=2690797 GT:DP:GQ:MIN_DP:PL 0/0:11:24:11:0,24,360 +chrX 2690798 . G . . END=2690803 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,50 +chrX 2690804 . T . . END=2690804 GT:DP:GQ:MIN_DP:PL 0/0:14:27:14:0,27,387 +chrX 2690805 . T . . END=2690812 GT:DP:GQ:MIN_DP:PL 0/0:15:0:15:0,0,0 +chrX 2690813 . T . . END=2690815 GT:DP:GQ:MIN_DP:PL 0/0:18:40:18:0,40,537 +chrX 2690816 . T . . END=2690822 GT:DP:GQ:MIN_DP:PL 0/0:18:0:18:0,0,0 +chrX 2690823 . G . . END=2690824 GT:DP:GQ:MIN_DP:PL 0/0:21:60:21:0,60,665 +chrX 2690825 . A . . END=2690834 GT:DP:GQ:MIN_DP:PL 0/0:22:0:22:0,0,0 +chrX 2690835 . G . . END=2690835 GT:DP:GQ:MIN_DP:PL 0/0:22:66:22:0,66,734 +chrX 2690836 . T . . END=2690837 GT:DP:GQ:MIN_DP:PL 0/0:24:0:24:0,0,19 +chrX 2690838 . A . . END=2691191 GT:DP:GQ:MIN_DP:PL 0/0:59:52:59:0,52,744 +chrX 2691192 . C CCGGGG, 1298.60 . AS_QUALapprox=|1306|0;AS_VarDP=32|34|0;BaseQRankSum=-0.942;DP=77;MQRankSum=0.000;QUALapprox=1306;RAW_GT_COUNT=0,1,0;RAW_MQandDP=277200,77;ReadPosRankSum=-1.328;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:32,34,0:66:99:1306,0,1231,1403,1333,2736:16,16,20,14 +chrX 2691193 . C . . END=2691675 GT:DP:GQ:MIN_DP:PL 0/0:80:99:80:0,120,1800 +chrX 2691676 . G T, 940.64 . AS_QUALapprox=|948|0;AS_VarDP=42|36|0;BaseQRankSum=0.688;DP=82;MQRankSum=0.000;QUALapprox=948;RAW_GT_COUNT=0,1,0;RAW_MQandDP=295200,82;ReadPosRankSum=0.206;VarDP=78 GT:AD:DP:GQ:PL:SB 0/1:42,36,0:78:99:948,0,1125,1074,1233,2306:20,22,18,18 +chrX 2691677 . T . . END=2691707 GT:DP:GQ:MIN_DP:PL 0/0:76:99:76:0,120,1800 +chrX 2691708 . T C, 2474.06 . AS_QUALapprox=|2488|0;AS_VarDP=0|73|0;DP=77;QUALapprox=2488;RAW_GT_COUNT=0,0,1;RAW_MQandDP=277200,77;VarDP=73 GT:AD:DP:GQ:PL:SB 1/1:0,73,0:73:99:2488,220,0,2488,220,2488:0,0,39,34 +chrX 2691709 . T . . END=2691941 GT:DP:GQ:MIN_DP:PL 0/0:74:99:74:0,120,1800 +chrX 2691942 . T C, 1204.64 . AS_QUALapprox=|1212|0;AS_VarDP=29|45|0;BaseQRankSum=-0.878;DP=79;MQRankSum=0.000;QUALapprox=1212;RAW_GT_COUNT=0,1,0;RAW_MQandDP=284400,79;ReadPosRankSum=-1.423;VarDP=74 GT:AD:DP:GQ:PL:SB 0/1:29,45,0:74:99:1212,0,732,1299,866,2165:12,17,23,22 +chrX 2691943 . G . . END=2692452 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,120,1800 +chrX 2692453 . T G, 1105.64 . AS_QUALapprox=|1113|0;AS_VarDP=19|40|0;BaseQRankSum=-2.359;DP=62;MQRankSum=0.000;QUALapprox=1113;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=-0.503;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:19,40,0:59:99:1113,0,483,1170,603,1773:9,10,15,25 +chrX 2692454 . G . . END=2693353 GT:DP:GQ:MIN_DP:PL 0/0:35:53:34:0,53,1003 +chrX 2693354 . A . . END=2693354 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,998 +chrX 2693355 . G . . END=2694518 GT:DP:GQ:MIN_DP:PL 0/0:58:80:58:0,80,1305 +chrX 2694519 . AG A, 810.60 . AS_QUALapprox=|818|0;AS_VarDP=31|28|0;BaseQRankSum=-0.852;DP=61;MQRankSum=0.000;QUALapprox=818;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=0.076;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:31,28,0:59:99:818,0,926,911,1010,1922:18,13,13,15 +chrX 2694521 . G . . END=2694755 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 2694756 . G GA, 497.60 . AS_QUALapprox=|505|0;AS_VarDP=20|24|0;BaseQRankSum=0.935;DP=56;MQRankSum=0.000;QUALapprox=505;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-0.389;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:20,24,0:44:99:505,0,410,565,482,1047:7,13,17,7 +chrX 2694757 . A . . END=2695534 GT:DP:GQ:MIN_DP:PL 0/0:61:98:61:0,98,1235 +chrX 2695535 . T C, 1333.06 . AS_QUALapprox=|1347|0;AS_VarDP=0|44|0;DP=47;QUALapprox=1347;RAW_GT_COUNT=0,0,1;RAW_MQandDP=168736,47;VarDP=44 GT:AD:DP:GQ:PL:SB 1/1:0,44,0:44:99:1347,131,0,1347,131,1347:0,0,20,24 +chrX 2695536 . G . . END=2695658 GT:DP:GQ:MIN_DP:PL 0/0:49:38:48:0,38,1288 +chrX 2695659 . T A, 1215.06 . AS_QUALapprox=|1229|0;AS_VarDP=0|40|0;DP=46;QUALapprox=1229;RAW_GT_COUNT=0,0,1;RAW_MQandDP=157752,46;VarDP=40 GT:AD:DP:GQ:PL:SB 1/1:0,40,0:40:99:1229,119,0,1229,119,1229:0,0,19,21 +chrX 2695660 . G . . END=2696040 GT:DP:GQ:MIN_DP:PL 0/0:58:71:58:0,71,1120 +chrX 2696041 . A G, 1826.06 . AS_QUALapprox=|1840|0;AS_VarDP=0|56|0;DP=56;QUALapprox=1840;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1840,168,0,1840,168,1840:0,0,30,26 +chrX 2696042 . G . . END=2696070 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 2696071 . G A, 1911.06 . AS_QUALapprox=|1925|0;AS_VarDP=0|61|0;DP=62;QUALapprox=1925;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=61 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:1925,182,0,1925,182,1925:0,0,34,27 +chrX 2696072 . A . . END=2696177 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 2696178 . A G, 1958.06 . AS_QUALapprox=|1972|0;AS_VarDP=0|60|0;DP=65;QUALapprox=1972;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:1972,180,0,1972,180,1972:0,0,36,24 +chrX 2696179 . A . . END=2696438 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 2696439 . T C, 2362.06 . AS_QUALapprox=|2376|0;AS_VarDP=1|71|0;BaseQRankSum=-0.182;DP=74;MQRankSum=0.000;QUALapprox=2376;RAW_GT_COUNT=0,0,1;RAW_MQandDP=265825,74;ReadPosRankSum=-1.420;VarDP=72 GT:AD:DP:GQ:PL:SB 1/1:1,71,0:72:99:2376,182,0,2379,214,2411:0,1,35,36 +chrX 2696440 . C . . END=2697474 GT:DP:GQ:MIN_DP:PL 0/0:62:96:62:0,96,1301 +chrX 2697475 . T C, 1945.06 . AS_QUALapprox=|1959|0;AS_VarDP=0|60|0;DP=62;QUALapprox=1959;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:1959,180,0,1959,180,1959:0,0,34,26 +chrX 2697476 . T . . END=2697554 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 2697555 . C A, 2049.06 . AS_QUALapprox=|2063|0;AS_VarDP=1|64|0;BaseQRankSum=1.996;DP=66;MQRankSum=0.000;QUALapprox=2063;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;ReadPosRankSum=-1.519;VarDP=65 GT:AD:DP:GQ:PL:SB 1/1:1,64,0:65:99:2063,170,0,2066,192,2088:1,0,26,38 +chrX 2697556 . A . . END=2697945 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,108,1643 +chrX 2697946 . T C, 1499.06 . AS_QUALapprox=|1513|0;AS_VarDP=0|47|0;DP=49;QUALapprox=1513;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1513,141,0,1513,141,1513:0,0,24,23 +chrX 2697947 . C . . END=2698738 GT:DP:GQ:MIN_DP:PL 0/0:54:62:54:0,62,1211 +chrX 2698739 . C T, 2270.06 . AS_QUALapprox=|2284|0;AS_VarDP=0|68|0;DP=68;QUALapprox=2284;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;VarDP=68 GT:AD:DP:GQ:PL:SB 1/1:0,68,0:68:99:2284,204,0,2284,204,2284:0,0,35,33 +chrX 2698740 . C . . END=2698850 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 2698851 . A G, 1698.06 . AS_QUALapprox=|1712|0;AS_VarDP=0|54|0;DP=55;QUALapprox=1712;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:1712,162,0,1712,162,1712:0,0,25,29 +chrX 2698852 . T . . END=2699361 GT:DP:GQ:MIN_DP:PL 0/0:59:87:59:0,87,1405 +chrX 2699362 . A G, 1457.06 . AS_QUALapprox=|1471|0;AS_VarDP=0|49|0;DP=49;QUALapprox=1471;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1471,146,0,1471,146,1471:0,0,17,32 +chrX 2699363 . T . . END=2701435 GT:DP:GQ:MIN_DP:PL 0/0:54:42:54:0,42,893 +chrX 2701436 . T C, 2216.06 . AS_QUALapprox=|2230|0;AS_VarDP=0|70|0;DP=72;QUALapprox=2230;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;VarDP=70 GT:AD:DP:GQ:PL:SB 1/1:0,70,0:70:99:2230,210,0,2230,210,2230:0,0,35,35 +chrX 2701437 . T . . END=2701584 GT:DP:GQ:MIN_DP:PL 0/0:76:99:76:0,109,1800 +chrX 2701585 . GCCTC G, 3215.03 . AS_QUALapprox=|3229|0;AS_VarDP=0|72|0;DP=77;QUALapprox=3229;RAW_GT_COUNT=0,0,1;RAW_MQandDP=277200,77;VarDP=72 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,72,0:72:99:0|1:2701585_GCCTC_G:3229,217,0,3229,217,3229:2701585:0,0,33,39 +chrX 2701590 . T TG, 3215.03 . AS_QUALapprox=|3229|0;AS_VarDP=0|72|0;DP=75;QUALapprox=3229;RAW_GT_COUNT=0,0,1;RAW_MQandDP=270000,75;VarDP=72 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,72,0:72:99:0|1:2701585_GCCTC_G:3229,217,0,3229,217,3229:2701585:0,0,33,39 +chrX 2701591 . T . . END=2701612 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 2701613 . T G, 2228.06 . AS_QUALapprox=|2242|0;AS_VarDP=1|70|0;BaseQRankSum=2.348;DP=76;MQRankSum=0.000;QUALapprox=2242;RAW_GT_COUNT=0,0,1;RAW_MQandDP=273600,76;ReadPosRankSum=-0.244;VarDP=71 GT:AD:DP:GQ:PL:SB 1/1:1,70,0:71:99:2242,203,0,2244,210,2251:1,0,30,40 +chrX 2701614 . A . . END=2703078 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,113,1627 +chrX 2703079 . A G, 1995.06 . AS_QUALapprox=|2009|0;AS_VarDP=0|63|0;DP=64;QUALapprox=2009;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=63 GT:AD:DP:GQ:PL:SB 1/1:0,63,0:63:99:2009,188,0,2009,188,2009:0,0,29,34 +chrX 2703080 . C . . END=2703416 GT:DP:GQ:MIN_DP:PL 0/0:63:96:63:0,96,1305 +chrX 2703417 . G A, 1356.06 . AS_QUALapprox=|1370|0;AS_VarDP=0|40|0;DP=43;QUALapprox=1370;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154800,43;VarDP=40 GT:AD:DP:GQ:PL:SB 1/1:0,40,0:40:99:1370,120,0,1370,120,1370:0,0,11,29 +chrX 2703418 . C . . END=2703604 GT:DP:GQ:MIN_DP:PL 0/0:44:85:44:0,85,1146 +chrX 2703605 . A AGT, 355.60 . AS_QUALapprox=|363|0;AS_VarDP=14|19|0;BaseQRankSum=-0.896;DP=48;MQRankSum=0.000;QUALapprox=363;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=-0.146;VarDP=33 GT:AD:DP:GQ:PL:SB 0/1:14,19,0:33:99:363,0,257,405,313,718:8,6,8,11 +chrX 2703606 . G . . END=2703651 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,102,1530 +chrX 2703652 . T . . END=2703652 GT:DP:GQ:MIN_DP:PL 0/0:45:12:45:0,12,1227 +chrX 2703653 . G . . END=2704040 GT:DP:GQ:MIN_DP:PL 0/0:42:25:38:0,25,921 +chrX 2704041 . T C, 1504.06 . AS_QUALapprox=|1518|0;AS_VarDP=1|50|0;BaseQRankSum=-0.662;DP=53;MQRankSum=0.000;QUALapprox=1518;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;ReadPosRankSum=-0.646;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:1,50,0:51:99:1518,118,0,1521,150,1552:1,0,22,28 +chrX 2704042 . G . . END=2704218 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 2704219 . G A, 1653.06 . AS_QUALapprox=|1667|0;AS_VarDP=0|51|0;DP=51;QUALapprox=1667;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1667,153,0,1667,153,1667:0,0,26,25 +chrX 2704220 . T . . END=2704605 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,107,1800 +chrX 2704606 . C T, 2202.06 . AS_QUALapprox=|2216|0;AS_VarDP=0|52|0;DP=54;QUALapprox=2216;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,52,0:52:99:0|1:2704606_C_T:2216,156,0,2216,156,2216:2704606:0,0,21,31 +chrX 2704607 . A . . END=2704623 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 2704624 . T G, 2157.06 . AS_QUALapprox=|2171|0;AS_VarDP=0|51|0;DP=53;QUALapprox=2171;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=51 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,51,0:51:99:0|1:2704606_C_T:2171,153,0,2171,153,2171:2704606:0,0,21,30 +chrX 2704625 . T . . END=2705001 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,102,1415 +chrX 2705002 . A G, 2283.06 . AS_QUALapprox=|2297|0;AS_VarDP=0|72|0;DP=72;QUALapprox=2297;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;VarDP=72 GT:AD:DP:GQ:PL:SB 1/1:0,72,0:72:99:2297,216,0,2297,216,2297:0,0,41,31 +chrX 2705003 . C . . END=2705503 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 2705504 . C T, 2107.06 . AS_QUALapprox=|2121|0;AS_VarDP=2|63|0;BaseQRankSum=4.486;DP=68;MQRankSum=0.000;QUALapprox=2121;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;ReadPosRankSum=0.570;VarDP=65 GT:AD:DP:GQ:PL:SB 1/1:2,63,0:65:99:2121,176,0,2126,189,2140:2,0,35,28 +chrX 2705505 . G . . END=2706062 GT:DP:GQ:MIN_DP:PL 0/0:61:86:61:0,86,1276 +chrX 2706063 . G GAA, 1678.03 . AS_QUALapprox=|1692|0;AS_VarDP=0|50|0;DP=56;QUALapprox=1692;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1692,150,0,1692,150,1692:0,0,22,28 +chrX 2706064 . A . . END=2706144 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,107,1225 +chrX 2706145 . T G, 1348.06 . AS_QUALapprox=|1362|0;AS_VarDP=0|43|0;DP=45;QUALapprox=1362;RAW_GT_COUNT=0,0,1;RAW_MQandDP=159529,45;VarDP=43 GT:AD:DP:GQ:PL:SB 1/1:0,43,0:43:99:1362,128,0,1362,128,1362:0,0,23,20 +chrX 2706146 . T . . END=2706353 GT:DP:GQ:MIN_DP:PL 0/0:62:97:62:0,97,1340 +chrX 2706354 . T C, 2683.06 . AS_QUALapprox=|2697|0;AS_VarDP=0|63|0;DP=65;QUALapprox=2697;RAW_GT_COUNT=0,0,1;RAW_MQandDP=233536,65;VarDP=63 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,63,0:63:99:0|1:2706354_T_C:2697,190,0,2697,190,2697:2706354:0,0,29,34 +chrX 2706355 . G . . END=2706367 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 2706368 . G A, 2768.06 . AS_QUALapprox=|2782|0;AS_VarDP=0|66|0;DP=71;QUALapprox=2782;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255136,71;VarDP=66 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,66,0:66:99:0|1:2706354_T_C:2782,199,0,2782,199,2782:2706354:0,0,36,30 +chrX 2706369 . A . . END=2706425 GT:DP:GQ:MIN_DP:PL 0/0:75:99:75:0,120,1800 +chrX 2706426 . A G, 2256.06 . AS_QUALapprox=|2270|0;AS_VarDP=0|74|0;DP=81;QUALapprox=2270;RAW_GT_COUNT=0,0,1;RAW_MQandDP=291600,81;VarDP=74 GT:AD:DP:GQ:PL:SB 1/1:0,74,0:74:99:2270,221,0,2270,221,2270:0,0,46,28 +chrX 2706427 . A . . END=2707326 GT:DP:GQ:MIN_DP:PL 0/0:65:71:65:0,71,1491 +chrX 2707327 . C . . END=2707328 GT:DP:GQ:MIN_DP:PL 0/0:71:0:71:0,0,1891 +chrX 2707329 . C CAAAAG, 2075.03 . AS_QUALapprox=|2089|0;AS_VarDP=0|47|0;DP=71;QUALapprox=2089;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:2089,140,0,2090,141,2092:0,0,27,20 +chrX 2707330 . A . . END=2707401 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 2707402 . C A, 2158.06 . AS_QUALapprox=|2172|0;AS_VarDP=0|66|0;DP=67;QUALapprox=2172;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=66 GT:AD:DP:GQ:PL:SB 1/1:0,66,0:66:99:2172,198,0,2172,198,2172:0,0,40,26 +chrX 2707403 . C . . END=2708120 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,117,1534 +chrX 2708121 . T C, 1487.06 . AS_QUALapprox=|1501|0;AS_VarDP=1|47|0;BaseQRankSum=-0.391;DP=49;MQRankSum=0.000;QUALapprox=1501;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176049,49;ReadPosRankSum=-1.589;VarDP=48 GT:AD:DP:GQ:PL:SB 1/1:1,47,0:48:99:1501,109,0,1504,141,1536:0,1,23,24 +chrX 2708122 . C . . END=2708660 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,100,1613 +chrX 2708661 . A G, 1946.06 . AS_QUALapprox=|1960|0;AS_VarDP=1|60|0;BaseQRankSum=-0.370;DP=63;MQRankSum=0.000;QUALapprox=1960;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;ReadPosRankSum=-0.483;VarDP=61 GT:AD:DP:GQ:PL:SB 1/1:1,60,0:61:99:1960,149,0,1963,180,1995:0,1,33,27 +chrX 2708662 . C . . END=2709158 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 2709159 . C . . END=2709159 GT:DP:GQ:MIN_DP:PL 0/0:89:10:89:0,10,2387 +chrX 2709160 . A . . END=2709161 GT:DP:GQ:MIN_DP:PL 0/0:92:99:92:0,120,1800 +chrX 2709162 . C . . END=2709191 GT:DP:GQ:MIN_DP:PL 0/0:91:0:91:0,0,1316 +chrX 2709192 . C . . END=2709193 GT:DP:GQ:MIN_DP:PL 0/0:100:99:100:0,120,1800 +chrX 2709194 . C . . END=2709198 GT:DP:GQ:MIN_DP:PL 0/0:84:0:84:0,0,1022 +chrX 2709199 . A . . END=2709199 GT:DP:GQ:MIN_DP:PL 0/0:102:99:102:0,120,1800 +chrX 2709200 . C . . END=2709200 GT:DP:GQ:MIN_DP:PL 0/0:85:0:85:0,0,840 +chrX 2709201 . A . . END=2709202 GT:DP:GQ:MIN_DP:PL 0/0:105:99:105:0,120,1800 +chrX 2709203 . A ACATGCATGCACACTCATGCCATGCATATATG, 1652.03 . AS_QUALapprox=|1666|0;AS_VarDP=2|50|0;BaseQRankSum=-0.820;DP=92;MQRankSum=0.000;QUALapprox=1666;RAW_GT_COUNT=0,0,1;RAW_MQandDP=331200,92;ReadPosRankSum=-0.956;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:2,50,0:52:99:1666,128,0,1679,150,1701:2,0,24,26 +chrX 2709204 . C . . END=2709247 GT:DP:GQ:MIN_DP:PL 0/0:85:99:85:0,120,1800 +chrX 2709248 . G . . END=2709250 GT:DP:GQ:MIN_DP:PL 0/0:82:0:82:0,0,1330 +chrX 2709251 . T . . END=2709253 GT:DP:GQ:MIN_DP:PL 0/0:98:99:98:0,120,1800 +chrX 2709254 . A . . END=2709267 GT:DP:GQ:MIN_DP:PL 0/0:92:0:92:0,0,1628 +chrX 2709268 . T . . END=2709268 GT:DP:GQ:MIN_DP:PL 0/0:101:99:101:0,120,1800 +chrX 2709269 . C . . END=2709285 GT:DP:GQ:MIN_DP:PL 0/0:88:0:88:0,0,1807 +chrX 2709286 . A . . END=2709287 GT:DP:GQ:MIN_DP:PL 0/0:85:64:85:0,64,1800 +chrX 2709288 . A . . END=2709292 GT:DP:GQ:MIN_DP:PL 0/0:79:0:79:0,0,2118 +chrX 2709293 . A . . END=2709662 GT:DP:GQ:MIN_DP:PL 0/0:82:25:79:0,25,1800 +chrX 2709663 . T C, 2264.06 . AS_QUALapprox=|2278|0;AS_VarDP=0|69|0;DP=72;QUALapprox=2278;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;VarDP=69 GT:AD:DP:GQ:PL:SB 1/1:0,69,0:69:99:2278,207,0,2278,207,2278:0,0,32,37 +chrX 2709664 . A . . END=2710174 GT:DP:GQ:MIN_DP:PL 0/0:61:90:61:0,90,1623 +chrX 2710175 . T TC, 1852.03 . AS_QUALapprox=|1866|0;AS_VarDP=0|50|0;DP=52;QUALapprox=1866;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1866,150,0,1866,150,1866:0,0,23,27 +chrX 2710176 . C . . END=2710374 GT:DP:GQ:MIN_DP:PL 0/0:48:66:46:0,66,1155 +chrX 2710375 . A C, 1994.06 . AS_QUALapprox=|2008|0;AS_VarDP=0|63|0;DP=63;QUALapprox=2008;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=63 GT:AD:DP:GQ:PL:SB 1/1:0,63,0:63:99:2008,188,0,2008,188,2008:0,0,31,32 +chrX 2710376 . A . . END=2710437 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 2710438 . G T, 1950.06 . AS_QUALapprox=|1964|0;AS_VarDP=0|62|0;DP=66;QUALapprox=1964;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:0,62,0:62:99:1964,185,0,1964,185,1964:0,0,35,27 +chrX 2710439 . T . . END=2710866 GT:DP:GQ:MIN_DP:PL 0/0:53:32:47:0,32,1285 +chrX 2710867 . C CT, 742.03 . AS_QUALapprox=|756|0;AS_VarDP=0|34|0;DP=48;QUALapprox=756;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165225,48;VarDP=34 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,34,0:34:99:0|1:2710867_C_CT:756,100,0,757,101,757:2710867:0,0,19,15 +chrX 2710868 . T . . END=2710888 GT:DP:GQ:MIN_DP:PL 0/0:44:66:44:0,66,990 +chrX 2710889 . G T, 16.63 . AS_QUALapprox=|24|0;AS_VarDP=25|5|0;BaseQRankSum=-1.835;DP=46;MQRankSum=0.537;QUALapprox=24;RAW_GT_COUNT=0,1,0;RAW_MQandDP=156025,46;ReadPosRankSum=1.114;VarDP=30 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,5,0:30:24:0|1:2710867_C_CT:24,0,706,99,721,820:2710867:5,20,5,0 +chrX 2710890 . A . . END=2712421 GT:DP:GQ:MIN_DP:PL 0/0:45:26:30:0,26,814 +chrX 2712422 . GA G, 1300.03 . AS_QUALapprox=|1314|0;AS_VarDP=1|44|0;BaseQRankSum=-0.368;DP=50;MQRankSum=0.000;QUALapprox=1314;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;ReadPosRankSum=1.733;VarDP=45 GT:AD:DP:GQ:PL:SB 1/1:1,44,0:45:99:1314,105,0,1317,132,1345:1,0,19,25 +chrX 2712424 . A . . END=2712479 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,108,1514 +chrX 2712480 . G A, 1584.06 . AS_QUALapprox=|1598|0;AS_VarDP=1|50|0;BaseQRankSum=-0.411;DP=56;MQRankSum=0.000;QUALapprox=1598;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;ReadPosRankSum=-1.121;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:1,50,0:51:99:1598,118,0,1601,150,1633:1,0,30,20 +chrX 2712481 . T . . END=2712578 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,118,1350 +chrX 2712579 . A G, 1622.06 . AS_QUALapprox=|1636|0;AS_VarDP=0|52|0;DP=53;QUALapprox=1636;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1636,155,0,1636,155,1636:0,0,30,22 +chrX 2712580 . T . . END=2713314 GT:DP:GQ:MIN_DP:PL 0/0:59:92:59:0,92,1325 +chrX 2713315 . AAC A, 1842.03 . AS_QUALapprox=|1856|0;AS_VarDP=0|43|0;DP=49;QUALapprox=1856;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=43 GT:AD:DP:GQ:PL:SB 1/1:0,43,0:43:99:1856,130,0,1856,130,1856:0,0,23,20 +chrX 2713318 . A . . END=2714440 GT:DP:GQ:MIN_DP:PL 0/0:57:66:57:0,66,1417 +chrX 2714441 . C T, 1867.06 . AS_QUALapprox=|1881|0;AS_VarDP=0|57|0;DP=58;QUALapprox=1881;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1881,171,0,1881,171,1881:0,0,25,32 +chrX 2714442 . G . . END=2715209 GT:DP:GQ:MIN_DP:PL 0/0:53:79:53:0,79,1049 +chrX 2715210 . C CT, 2552.03 . AS_QUALapprox=|2566|0;AS_VarDP=1|70|0;BaseQRankSum=-0.437;DP=75;MQRankSum=0.000;QUALapprox=2566;RAW_GT_COUNT=0,0,1;RAW_MQandDP=270000,75;ReadPosRankSum=-0.073;VarDP=71 GT:AD:DP:GQ:PL:SB 1/1:1,70,0:71:99:2566,176,0,2569,211,2604:0,1,45,25 +chrX 2715211 . T . . END=2717083 GT:DP:GQ:MIN_DP:PL 0/0:60:27:45:0,27,1240 +chrX 2717084 . A C, 1775.06 . AS_QUALapprox=|1789|0;AS_VarDP=0|58|0;DP=59;QUALapprox=1789;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=58 GT:AD:DP:GQ:PL:SB 1/1:0,58,0:58:99:1789,174,0,1789,174,1789:0,0,23,35 +chrX 2717085 . G . . END=2717345 GT:DP:GQ:MIN_DP:PL 0/0:55:65:55:0,65,1398 +chrX 2717346 . T . . END=2717346 GT:DP:GQ:MIN_DP:PL 0/0:52:0:52:0,0,1053 +chrX 2717347 . C CAA, 868.03 . AS_QUALapprox=|882|0;AS_VarDP=1|30|0;BaseQRankSum=-0.398;DP=48;MQRankSum=0.000;QUALapprox=882;RAW_GT_COUNT=0,0,1;RAW_MQandDP=168964,48;ReadPosRankSum=-0.056;VarDP=31 GT:AD:DP:GQ:PL:SB 1/1:1,30,0:31:82:882,82,0,885,89,892:1,0,19,11 +chrX 2717348 . A . . END=2717447 GT:DP:GQ:MIN_DP:PL 0/0:59:58:59:0,58,1507 +chrX 2717448 . G C, 1837.06 . AS_QUALapprox=|1851|0;AS_VarDP=0|57|0;DP=59;QUALapprox=1851;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1851,171,0,1851,171,1851:0,0,19,38 +chrX 2717449 . T . . END=2717936 GT:DP:GQ:MIN_DP:PL 0/0:62:84:62:0,84,1256 +chrX 2717937 . CTTT C, 544.03 . AS_QUALapprox=|558|0;AS_VarDP=2|19|0;BaseQRankSum=-0.835;DP=41;MQRankSum=0.000;QUALapprox=558;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147600,41;ReadPosRankSum=0.541;VarDP=21 GT:AD:DP:GQ:PL:SB 1/1:2,19,0:21:43:558,43,0,563,57,577:2,0,7,12 +chrX 2717941 . T . . END=2717956 GT:DP:GQ:MIN_DP:PL 0/0:33:60:33:0,60,900 +chrX 2717957 . T . . END=2717959 GT:DP:GQ:MIN_DP:PL 0/0:27:12:27:0,12,749 +chrX 2717960 . A . . END=2718033 GT:DP:GQ:MIN_DP:PL 0/0:36:61:36:0,61,759 +chrX 2718034 . C T, 1810.06 . AS_QUALapprox=|1824|0;AS_VarDP=0|41|0;DP=41;QUALapprox=1824;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147600,41;VarDP=41 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,41,0:41:99:0|1:2718034_C_T:1824,123,0,1824,123,1824:2718034:0,0,18,23 +chrX 2718035 . G . . END=2718040 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,105,1575 +chrX 2718041 . A G, 1810.06 . AS_QUALapprox=|1824|0;AS_VarDP=0|41|0;DP=41;QUALapprox=1824;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147600,41;VarDP=41 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,41,0:41:99:0|1:2718034_C_T:1824,123,0,1824,123,1824:2718034:0,0,18,23 +chrX 2718042 . G . . END=2718209 GT:DP:GQ:MIN_DP:PL 0/0:54:86:54:0,86,1281 +chrX 2718210 . G C, 1710.06 . AS_QUALapprox=|1724|0;AS_VarDP=0|56|0;DP=61;QUALapprox=1724;RAW_GT_COUNT=0,0,1;RAW_MQandDP=217165,61;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1724,167,0,1724,167,1724:0,0,32,24 +chrX 2718211 . G . . END=2718368 GT:DP:GQ:MIN_DP:PL 0/0:58:75:58:0,75,1514 +chrX 2718369 . C CT, 314.60 . AS_QUALapprox=|322|0;AS_VarDP=18|20|0;BaseQRankSum=0.257;DP=59;MQRankSum=0.076;QUALapprox=322;RAW_GT_COUNT=0,1,0;RAW_MQandDP=204160,59;ReadPosRankSum=1.009;VarDP=38 GT:AD:DP:GQ:PL:SB 0/1:18,20,0:38:99:322,0,292,376,352,728:8,10,10,10 +chrX 2718370 . T . . END=2718386 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 2718387 . G . . END=2718387 GT:DP:GQ:MIN_DP:PL 0/0:60:0:60:0,0,1436 +chrX 2718388 . A . . END=2718493 GT:DP:GQ:MIN_DP:PL 0/0:63:71:63:0,71,1667 +chrX 2718494 . A G, 1945.06 . AS_QUALapprox=|1959|0;AS_VarDP=0|62|0;DP=64;QUALapprox=1959;RAW_GT_COUNT=0,0,1;RAW_MQandDP=227548,64;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:0,62,0:62:99:1959,185,0,1959,185,1959:0,0,27,35 +chrX 2718495 . A . . END=2719188 GT:DP:GQ:MIN_DP:PL 0/0:58:88:58:0,88,1501 +chrX 2719189 . T C, 1763.06 . AS_QUALapprox=|1777|0;AS_VarDP=0|54|0;DP=56;QUALapprox=1777;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:1777,162,0,1777,162,1777:0,0,21,33 +chrX 2719190 . G . . END=2719397 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 2719398 . T TC, 1788.03 . AS_QUALapprox=|1802|0;AS_VarDP=0|55|0;DP=59;QUALapprox=1802;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1802,165,0,1802,165,1802:0,0,33,22 +chrX 2719399 . C . . END=2720070 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 2720071 . T G, 1728.06 . AS_QUALapprox=|1742|0;AS_VarDP=0|54|0;DP=56;QUALapprox=1742;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:1742,162,0,1742,162,1742:0,0,24,30 +chrX 2720072 . A . . END=2720619 GT:DP:GQ:MIN_DP:PL 0/0:55:46:55:0,46,1264 +chrX 2720620 . C CT, 488.03 . AS_QUALapprox=|502|0;AS_VarDP=1|28|0;BaseQRankSum=1.529;DP=47;MQRankSum=-0.299;QUALapprox=502;RAW_GT_COUNT=0,0,1;RAW_MQandDP=160068,47;ReadPosRankSum=0.060;VarDP=29 GT:AD:DP:GQ:PL:SB 1/1:1,28,0:29:74:502,74,0,505,82,512:0,1,21,7 +chrX 2720621 . T . . END=2720642 GT:DP:GQ:MIN_DP:PL 0/0:48:51:48:0,51,765 +chrX 2720643 . G . . END=2720645 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,158 +chrX 2720646 . A . . END=2720985 GT:DP:GQ:MIN_DP:PL 0/0:52:47:52:0,47,832 +chrX 2720986 . T G, 1812.06 . AS_QUALapprox=|1826|0;AS_VarDP=0|55|0;DP=60;QUALapprox=1826;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1826,165,0,1826,165,1826:0,0,26,29 +chrX 2720987 . A . . END=2723531 GT:DP:GQ:MIN_DP:PL 0/0:59:89:59:0,89,1380 +chrX 2723532 . T TC, 1618.03 . AS_QUALapprox=|1632|0;AS_VarDP=0|52|0;DP=55;QUALapprox=1632;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1632,156,0,1632,156,1632:0,0,28,24 +chrX 2723533 . C . . END=2724524 GT:DP:GQ:MIN_DP:PL 0/0:58:40:58:0,40,1064 +chrX 2724525 . C T, 2254.06 . AS_QUALapprox=|2268|0;AS_VarDP=0|69|0;DP=72;QUALapprox=2268;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;VarDP=69 GT:AD:DP:GQ:PL:SB 1/1:0,69,0:69:99:2268,207,0,2268,207,2268:0,0,28,41 +chrX 2724526 . T . . END=2724770 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 2724771 . C G, 1854.06 . AS_QUALapprox=|1868|0;AS_VarDP=1|60|0;BaseQRankSum=-0.451;DP=62;MQRankSum=0.000;QUALapprox=1868;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;ReadPosRankSum=-0.994;VarDP=61 GT:AD:DP:GQ:PL:SB 1/1:1,60,0:61:99:1868,147,0,1871,179,1903:1,0,32,28 +chrX 2724772 . C . . END=2725329 GT:DP:GQ:MIN_DP:PL 0/0:53:69:53:0,69,1096 +chrX 2725330 . T C, 2168.06 . AS_QUALapprox=|2182|0;AS_VarDP=0|71|0;DP=72;QUALapprox=2182;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;VarDP=71 GT:AD:DP:GQ:PL:SB 1/1:0,71,0:71:99:2182,211,0,2182,211,2182:0,0,30,41 +chrX 2725331 . G . . END=2725651 GT:DP:GQ:MIN_DP:PL 0/0:74:99:74:0,110,1570 +chrX 2725652 . C T, 630.64 . AS_QUALapprox=|638|0;AS_VarDP=24|23|0;BaseQRankSum=1.487;DP=50;MQRankSum=-0.979;QUALapprox=638;RAW_GT_COUNT=0,1,0;RAW_MQandDP=179536,50;ReadPosRankSum=-0.532;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:24,23,0:47:99:638,0,633,710,702,1412:10,14,14,9 +chrX 2725653 . G . . END=2725877 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 2725878 . G C, 1117.64 . AS_QUALapprox=|1125|0;AS_VarDP=20|38|0;BaseQRankSum=-0.021;DP=61;MQRankSum=0.000;QUALapprox=1125;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-0.131;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:20,38,0:58:99:1125,0,511,1185,625,1810:10,10,17,21 +chrX 2725879 . C . . END=2726260 GT:DP:GQ:MIN_DP:PL 0/0:52:92:52:0,92,1370 +chrX 2726261 . C T, 701.64 . AS_QUALapprox=|709|0;AS_VarDP=24|26|0;BaseQRankSum=2.370;DP=52;MQRankSum=0.000;QUALapprox=709;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=0.631;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:24,26,0:50:99:709,0,554,780,632,1413:11,13,15,11 +chrX 2726262 . G . . END=2726474 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,113,1568 +chrX 2726475 . G T, 735.64 . AS_QUALapprox=|743|0;AS_VarDP=34|28|0;BaseQRankSum=0.694;DP=67;MQRankSum=0.000;QUALapprox=743;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=1.366;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:34,28,0:62:99:743,0,911,844,995,1839:21,13,16,12 +chrX 2726476 . T . . END=2726689 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,116,1682 +chrX 2726690 . AGCC A, 1192.60 . AS_QUALapprox=|1200|0;AS_VarDP=27|31|0;BaseQRankSum=0.190;DP=59;MQRankSum=0.000;QUALapprox=1200;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=0.016;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:27,31,0:58:99:1200,0,1017,1281,1111,2392:16,11,12,19 +chrX 2726694 . G . . END=2727324 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,99,1351 +chrX 2727325 . G C, 798.64 . AS_QUALapprox=|806|0;AS_VarDP=17|29|0;BaseQRankSum=0.138;DP=49;MQRankSum=0.000;QUALapprox=806;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=1.116;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:17,29,0:46:99:806,0,394,856,480,1336:4,13,15,14 +chrX 2727326 . G . . END=2728222 GT:DP:GQ:MIN_DP:PL 0/0:58:81:58:0,81,1215 +chrX 2728223 . G . . END=2728223 GT:DP:GQ:MIN_DP:PL 0/0:42:3:42:0,3,1082 +chrX 2728224 . A . . END=2728391 GT:DP:GQ:MIN_DP:PL 0/0:41:44:41:0,44,857 +chrX 2728392 . C T, 744.64 . AS_QUALapprox=|752|0;AS_VarDP=27|28|0;BaseQRankSum=-0.667;DP=56;MQRankSum=0.000;QUALapprox=752;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=1.861;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:27,28,0:55:99:752,0,752,833,836,1669:15,12,13,15 +chrX 2728393 . G . . END=2728833 GT:DP:GQ:MIN_DP:PL 0/0:64:74:64:0,74,1276 +chrX 2728834 . CT C, 106.60 . AS_QUALapprox=|114|0;AS_VarDP=19|10|0;BaseQRankSum=-1.141;DP=44;MQRankSum=0.000;QUALapprox=114;RAW_GT_COUNT=0,1,0;RAW_MQandDP=152593,44;ReadPosRankSum=-0.138;VarDP=29 GT:AD:DP:GQ:PL:SB 0/1:19,10,0:29:99:114,0,267,170,297,467:13,6,2,8 +chrX 2728836 . T . . END=2728854 GT:DP:GQ:MIN_DP:PL 0/0:44:60:44:0,60,900 +chrX 2728855 . G . . END=2728855 GT:DP:GQ:MIN_DP:PL 0/0:38:10:38:0,10,1082 +chrX 2728856 . A . . END=2728915 GT:DP:GQ:MIN_DP:PL 0/0:40:82:40:0,82,1177 +chrX 2728916 . A AACCTCC, 1111.60 . AS_QUALapprox=|1119|0;AS_VarDP=19|28|0;BaseQRankSum=-2.119;DP=47;MQRankSum=0.000;QUALapprox=1119;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=1.019;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:19,28,0:47:99:1119,0,708,1176,792,1968:7,12,9,19 +chrX 2728917 . A . . END=2729395 GT:DP:GQ:MIN_DP:PL 0/0:59:51:59:0,51,1489 +chrX 2729396 . C A, 722.64 . AS_QUALapprox=|730|0;AS_VarDP=28|27|0;BaseQRankSum=0.692;DP=59;MQRankSum=0.000;QUALapprox=730;RAW_GT_COUNT=0,1,0;RAW_MQandDP=209329,59;ReadPosRankSum=-2.282;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:28,27,0:55:99:730,0,733,814,814,1629:18,10,18,9 +chrX 2729397 . A . . END=2729439 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 2729440 . TA T, 880.60 . AS_QUALapprox=|888|0;AS_VarDP=25|28|0;BaseQRankSum=0.174;DP=53;MQRankSum=-1.322;QUALapprox=888;RAW_GT_COUNT=0,1,0;RAW_MQandDP=189541,53;ReadPosRankSum=-0.579;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:25,28,0:53:99:888,0,773,964,858,1821:10,15,16,12 +chrX 2729442 . A . . END=2729607 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,113,1564 +chrX 2729608 . C T, 788.64 . AS_QUALapprox=|796|0;AS_VarDP=27|30|0;BaseQRankSum=-0.545;DP=58;MQRankSum=0.000;QUALapprox=796;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=0.312;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:27,30,0:57:99:796,0,728,877,817,1695:8,19,15,15 +chrX 2729609 . C . . END=2729628 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 2729629 . A T, 727.64 . AS_QUALapprox=|735|0;AS_VarDP=24|27|0;BaseQRankSum=-2.180;DP=54;MQRankSum=0.000;QUALapprox=735;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=-0.661;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:24,27,0:51:99:735,0,681,807,762,1569:8,16,14,13 +chrX 2729630 . C . . END=2730013 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,103,1381 +chrX 2730014 . C T, 316.64 . AS_QUALapprox=|324|0;AS_VarDP=27|14|0;BaseQRankSum=0.456;DP=46;MQRankSum=0.000;QUALapprox=324;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=1.376;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:27,14,0:41:99:324,0,696,405,738,1142:18,9,10,4 +chrX 2730015 . G . . END=2730053 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,105,1362 +chrX 2730054 . C T, 843.64 . AS_QUALapprox=|851|0;AS_VarDP=18|31|0;BaseQRankSum=-0.042;DP=49;MQRankSum=0.000;QUALapprox=851;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=2.044;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:18,31,0:49:99:851,0,409,904,502,1406:10,8,16,15 +chrX 2730055 . G . . END=2730174 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,101,1425 +chrX 2730175 . CTT C,CT, 635.02 . AS_QUALapprox=|443|367|0;AS_VarDP=1|14|10|0;BaseQRankSum=-0.246;DP=42;MQRankSum=0.000;QUALapprox=652;RAW_GT_COUNT=0,0,1;RAW_MQandDP=148041,42;ReadPosRankSum=0.139;VarDP=25 GT:AD:DP:GQ:PL:SB 1/2:1,14,10,0:25:99:652,209,257,330,0,285,623,268,348,649:1,0,16,8 +chrX 2730178 . T . . END=2730927 GT:DP:GQ:MIN_DP:PL 0/0:53:50:53:0,50,899 +chrX 2730928 . T . . END=2730928 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,887 +chrX 2730929 . CAA C,CAAA, 691.02 . AS_QUALapprox=|394|232|0;AS_VarDP=0|15|16|0;DP=52;QUALapprox=708;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180100,52;VarDP=31 GT:AD:DP:GQ:PL:SB 1/2:0,15,16,0:31:99:708,314,628,476,0,528,783,516,542,983:0,0,9,22 +chrX 2730932 . A . . END=2731611 GT:DP:GQ:MIN_DP:PL 0/0:73:92:73:0,92,1800 +chrX 2731612 . A T, 591.64 . AS_QUALapprox=|599|0;AS_VarDP=23|22|0;BaseQRankSum=0.720;DP=48;MQRankSum=1.022;QUALapprox=599;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172225,48;ReadPosRankSum=0.500;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:23,22,0:45:99:599,0,614,669,680,1349:11,12,11,11 +chrX 2731613 . C . . END=2731790 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,108,1555 +chrX 2731791 . C T, 867.64 . AS_QUALapprox=|875|0;AS_VarDP=27|32|0;BaseQRankSum=0.056;DP=61;MQRankSum=0.000;QUALapprox=875;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=0.639;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:27,32,0:59:99:875,0,715,956,811,1767:15,12,16,16 +chrX 2731792 . T . . END=2732268 GT:DP:GQ:MIN_DP:PL 0/0:55:91:55:0,91,1348 +chrX 2732269 . A G, 566.64 . AS_QUALapprox=|574|0;AS_VarDP=31|26|0;BaseQRankSum=-1.225;DP=61;MQRankSum=0.000;QUALapprox=574;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-1.234;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:31,26,0:57:99:574,0,813,666,889,1556:17,14,11,15 +chrX 2732270 . C . . END=2732522 GT:DP:GQ:MIN_DP:PL 0/0:54:68:54:0,68,846 +chrX 2732523 . T C,G, 336.64 . AS_QUALapprox=|0|344|0;AS_VarDP=13|1|13|0;BaseQRankSum=0.152;DP=29;MQRankSum=0.000;QUALapprox=344;RAW_GT_COUNT=0,1,0;RAW_MQandDP=104400,29;ReadPosRankSum=0.049;VarDP=27 GT:AD:DP:GQ:PL:SB 0/2:13,1,13,0:27:99:344,376,731,0,351,319,383,734,358,741:8,5,6,8 +chrX 2732524 . T . . END=2732561 GT:DP:GQ:MIN_DP:PL 0/0:28:60:28:0,60,749 +chrX 2732562 . C CCT, 330.60 . AS_QUALapprox=|338|0;AS_VarDP=14|13|0;BaseQRankSum=0.579;DP=30;MQRankSum=0.000;QUALapprox=338;RAW_GT_COUNT=0,1,0;RAW_MQandDP=108000,30;ReadPosRankSum=0.801;VarDP=27 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:14,13,0:27:99:0|1:2732562_C_CCT:338,0,386,380,425,805:2732562:8,6,7,6 +chrX 2732563 . C . . END=2732570 GT:DP:GQ:MIN_DP:PL 0/0:28:70:28:0,70,894 +chrX 2732571 . C CTT, 441.60 . AS_QUALapprox=|449|0;AS_VarDP=13|16|0;BaseQRankSum=0.190;DP=31;MQRankSum=0.000;QUALapprox=449;RAW_GT_COUNT=0,1,0;RAW_MQandDP=111600,31;ReadPosRankSum=-1.514;VarDP=29 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:13,16,0:29:99:1|0:2732562_C_CCT:449,0,345,488,393,880:2732562:7,6,10,6 +chrX 2732572 . T . . END=2732767 GT:DP:GQ:MIN_DP:PL 0/0:37:29:33:0,29,735 +chrX 2732768 . T TC, 430.60 . AS_QUALapprox=|438|0;AS_VarDP=20|16|0;BaseQRankSum=0.845;DP=40;MQRankSum=0.000;QUALapprox=438;RAW_GT_COUNT=0,1,0;RAW_MQandDP=144000,40;ReadPosRankSum=-0.127;VarDP=36 GT:AD:DP:GQ:PL:SB 0/1:20,16,0:36:99:438,0,516,498,564,1062:5,15,4,12 +chrX 2732769 . C . . END=2732850 GT:DP:GQ:MIN_DP:PL 0/0:37:32:36:0,32,927 +chrX 2732851 . G T, 558.64 . AS_QUALapprox=|566|0;AS_VarDP=20|20|0;BaseQRankSum=1.862;DP=40;MQRankSum=0.000;QUALapprox=566;RAW_GT_COUNT=0,1,0;RAW_MQandDP=144000,40;ReadPosRankSum=0.534;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:20,20,0:40:99:566,0,495,625,555,1180:11,9,9,11 +chrX 2732852 . T . . END=2732937 GT:DP:GQ:MIN_DP:PL 0/0:36:36:35:0,36,864 +chrX 2732938 . T C, 278.64 . AS_QUALapprox=|286|0;AS_VarDP=18|13|0;BaseQRankSum=0.143;DP=32;MQRankSum=-1.111;QUALapprox=286;RAW_GT_COUNT=0,1,0;RAW_MQandDP=112624,32;ReadPosRankSum=-0.461;VarDP=31 GT:AD:DP:GQ:PL:SB 0/1:18,13,0:31:99:286,0,462,340,500,840:10,8,8,5 +chrX 2732939 . C . . END=2732965 GT:DP:GQ:MIN_DP:PL 0/0:31:50:31:0,50,817 +chrX 2732966 . A . . END=2732966 GT:DP:GQ:MIN_DP:PL 0/0:23:0:23:0,0,480 +chrX 2732967 . T . . END=2732980 GT:DP:GQ:MIN_DP:PL 0/0:30:55:30:0,55,715 +chrX 2732981 . G . . END=2732981 GT:DP:GQ:MIN_DP:PL 0/0:28:10:28:0,10,684 +chrX 2732982 . C . . END=2732985 GT:DP:GQ:MIN_DP:PL 0/0:33:79:33:0,79,948 +chrX 2732986 . A . . END=2732986 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,595 +chrX 2732987 . C . . END=2733058 GT:DP:GQ:MIN_DP:PL 0/0:35:37:29:0,37,687 +chrX 2733059 . C CCT, 605.60 . AS_QUALapprox=|613|0;AS_VarDP=20|17|0;BaseQRankSum=0.483;DP=42;MQRankSum=0.000;QUALapprox=613;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151200,42;ReadPosRankSum=-0.579;VarDP=37 GT:AD:DP:GQ:PL:SB 0/1:20,17,0:37:99:613,0,759,673,810,1483:9,11,7,10 +chrX 2733060 . C . . END=2733084 GT:DP:GQ:MIN_DP:PL 0/0:37:97:37:0,97,1111 +chrX 2733085 . C T, 496.64 . AS_QUALapprox=|504|0;AS_VarDP=23|19|0;BaseQRankSum=-1.926;DP=44;MQRankSum=0.000;QUALapprox=504;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=-1.112;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:23,19,0:42:99:504,0,673,573,730,1304:12,11,9,10 +chrX 2733086 . C . . END=2733524 GT:DP:GQ:MIN_DP:PL 0/0:62:94:62:0,94,1373 +chrX 2733525 . C T, 1012.64 . AS_QUALapprox=|1020|0;AS_VarDP=29|38|0;BaseQRankSum=-0.778;DP=68;MQRankSum=0.000;QUALapprox=1020;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=-0.247;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:29,38,0:67:99:1020,0,742,1106,856,1963:10,19,15,23 +chrX 2733526 . G . . END=2734684 GT:DP:GQ:MIN_DP:PL 0/0:45:25:42:0,25,1155 +chrX 2734685 . A T, 0.02 . AS_QUALapprox=|1|0;AS_VarDP=40|5|0;BaseQRankSum=-2.783;DP=46;MQRankSum=0.000;QUALapprox=1;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=0.388;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:40,5,0:45:1:1,0,1427,120,1441,1561:20,20,1,4 +chrX 2734686 . T . . END=2734697 GT:DP:GQ:MIN_DP:PL 0/0:48:50:46:0,50,1374 +chrX 2734698 . A T, 231.64 . AS_QUALapprox=|239|0;AS_VarDP=36|11|0;BaseQRankSum=-2.715;DP=53;MQRankSum=0.000;QUALapprox=239;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=0.266;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:36,11,0:47:99:239,0,1047,346,1079,1425:20,16,3,8 +chrX 2734699 . T . . END=2734712 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 2734713 . A T, 41.64 . AS_QUALapprox=|49|0;AS_VarDP=51|6|0;BaseQRankSum=-2.031;DP=59;MQRankSum=0.000;QUALapprox=49;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-1.107;VarDP=57 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:51,6,0:57:49:0|1:2734713_A_T:49,0,1996,202,2014,2216:2734713:29,22,2,4 +chrX 2734714 . C . . END=2734718 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 2734719 . A T, 38.64 . AS_QUALapprox=|46|0;AS_VarDP=52|6|0;BaseQRankSum=-3.384;DP=60;MQRankSum=0.000;QUALapprox=46;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=-0.881;VarDP=58 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:52,6,0:58:46:0|1:2734713_A_T:46,0,2027,202,2045,2247:2734713:30,22,2,4 +chrX 2734720 . T . . END=2734788 GT:DP:GQ:MIN_DP:PL 0/0:62:33:60:0,33,1507 +chrX 2734789 . A . . END=2734789 GT:DP:GQ:MIN_DP:PL 0/0:67:18:67:0,18,1449 +chrX 2734790 . T . . END=2734805 GT:DP:GQ:MIN_DP:PL 0/0:75:99:75:0,120,1800 +chrX 2734806 . A . . END=2734806 GT:DP:GQ:MIN_DP:PL 0/0:69:0:69:0,0,1560 +chrX 2734807 . T . . END=2734827 GT:DP:GQ:MIN_DP:PL 0/0:70:44:70:0,44,1563 +chrX 2734828 . A . . END=2734828 GT:DP:GQ:MIN_DP:PL 0/0:60:0:60:0,0,1170 +chrX 2734829 . C . . END=2734836 GT:DP:GQ:MIN_DP:PL 0/0:65:96:65:0,96,1633 +chrX 2734837 . A . . END=2734837 GT:DP:GQ:MIN_DP:PL 0/0:59:13:59:0,13,1392 +chrX 2734838 . C . . END=2734845 GT:DP:GQ:MIN_DP:PL 0/0:61:27:57:0,27,1492 +chrX 2734846 . A . . END=2734846 GT:DP:GQ:MIN_DP:PL 0/0:61:19:61:0,19,1451 +chrX 2734847 . T . . END=2735510 GT:DP:GQ:MIN_DP:PL 0/0:69:89:69:0,89,1349 +chrX 2735511 . C G, 1757.06 . AS_QUALapprox=|1771|0;AS_VarDP=1|54|0;BaseQRankSum=-0.210;DP=55;MQRankSum=0.000;QUALapprox=1771;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;ReadPosRankSum=0.662;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:1,54,0:55:99:1771,130,0,1774,162,1806:0,1,26,28 +chrX 2735512 . A . . END=2735871 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 2735872 . G A, 2115.06 . AS_QUALapprox=|2129|0;AS_VarDP=0|63|0;DP=65;QUALapprox=2129;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=63 GT:AD:DP:GQ:PL:SB 1/1:0,63,0:63:99:2129,189,0,2129,189,2129:0,0,29,34 +chrX 2735873 . T . . END=2736200 GT:DP:GQ:MIN_DP:PL 0/0:46:25:43:0,25,1151 +chrX 2736201 . C . . END=2736201 GT:DP:GQ:MIN_DP:PL 0/0:52:0:52:0,0,1240 +chrX 2736202 . A . . END=2736418 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,108,1800 +chrX 2736419 . A G, 1806.06 . AS_QUALapprox=|1820|0;AS_VarDP=0|53|0;DP=55;QUALapprox=1820;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1820,159,0,1820,159,1820:0,0,22,31 +chrX 2736420 . A . . END=2736812 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,115,1761 +chrX 2736813 . C T, 613.64 . AS_QUALapprox=|621|0;AS_VarDP=31|24|0;BaseQRankSum=1.880;DP=57;MQRankSum=-0.131;QUALapprox=621;RAW_GT_COUNT=0,1,0;RAW_MQandDP=204173,57;ReadPosRankSum=-0.323;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:31,24,0:55:99:621,0,708,712,780,1492:8,23,8,16 +chrX 2736814 . G . . END=2736883 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,102,1530 +chrX 2736884 . TAAATAAA T, 433.60 . AS_QUALapprox=|441|0;AS_VarDP=32|14|0;BaseQRankSum=-0.145;DP=51;MQRankSum=0.000;QUALapprox=441;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-1.349;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:32,14,0:46:99:441,0,1252,537,1295,1832:16,16,6,8 +chrX 2736892 . T . . END=2736967 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,114,1520 +chrX 2736968 . T C, 678.64 . AS_QUALapprox=|686|0;AS_VarDP=27|29|0;BaseQRankSum=-1.084;DP=58;MQRankSum=0.000;QUALapprox=686;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-0.837;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:27,29,0:56:99:686,0,646,766,733,1499:17,10,17,12 +chrX 2736969 . G . . END=2737090 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,109,1582 +chrX 2737091 . T C, 638.64 . AS_QUALapprox=|646|0;AS_VarDP=22|24|0;BaseQRankSum=-0.128;DP=48;MQRankSum=0.000;QUALapprox=646;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=0.308;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:22,24,0:46:99:646,0,572,712,644,1356:14,8,7,17 +chrX 2737092 . G . . END=2737165 GT:DP:GQ:MIN_DP:PL 0/0:48:85:48:0,85,1448 +chrX 2737166 . T C, 658.64 . AS_QUALapprox=|666|0;AS_VarDP=25|24|0;BaseQRankSum=0.828;DP=50;MQRankSum=0.000;QUALapprox=666;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=1.361;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:25,24,0:49:99:666,0,682,742,754,1495:13,12,18,6 +chrX 2737167 . A . . END=2737290 GT:DP:GQ:MIN_DP:PL 0/0:63:91:63:0,91,1431 +chrX 2737291 . T C, 854.64 . AS_QUALapprox=|862|0;AS_VarDP=28|32|0;BaseQRankSum=0.964;DP=67;MQRankSum=-0.146;QUALapprox=862;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223658,67;ReadPosRankSum=2.105;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:28,32,0:60:99:862,0,688,946,784,1730:13,15,18,14 +chrX 2737292 . C . . END=2737309 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 2737310 . G T, 2553.06 . AS_QUALapprox=|2567|0;AS_VarDP=0|65|0;DP=66;QUALapprox=2567;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216394,66;VarDP=65 GT:AD:DP:GQ:PL:SB 1/1:0,65,0:65:99:2567,196,0,2567,196,2567:0,0,34,31 +chrX 2737311 . G . . END=2737321 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 2737322 . T C, 1461.64 . AS_QUALapprox=|1469|0;AS_VarDP=28|37|0;BaseQRankSum=-1.025;DP=67;MQRankSum=-1.404;QUALapprox=1469;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219994,67;ReadPosRankSum=0.583;VarDP=65 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,37,0:65:99:0|1:2737322_T_C:1469,0,1018,1554,1130,2683:2737322:14,14,20,17 +chrX 2737323 . G . . END=2737324 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 2737325 . A C, 1490.64 . AS_QUALapprox=|1498|0;AS_VarDP=29|38|0;BaseQRankSum=-0.509;DP=68;MQRankSum=-1.420;QUALapprox=1498;RAW_GT_COUNT=0,1,0;RAW_MQandDP=224278,68;ReadPosRankSum=0.596;VarDP=67 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,38,0:67:99:0|1:2737322_T_C:1498,0,1057,1585,1172,2757:2737322:15,14,20,18 +chrX 2737326 . C . . END=2737333 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 2737334 . C T, 1578.64 . AS_QUALapprox=|1586|0;AS_VarDP=28|41|0;BaseQRankSum=-0.532;DP=71;MQRankSum=-1.249;QUALapprox=1586;RAW_GT_COUNT=0,1,0;RAW_MQandDP=235078,71;ReadPosRankSum=-0.539;VarDP=69 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,41,0:69:99:0|1:2737322_T_C:1586,0,1016,1671,1140,2810:2737322:16,12,21,20 +chrX 2737335 . G . . END=2737421 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 2737422 . C T, 997.64 . AS_QUALapprox=|1005|0;AS_VarDP=23|37|0;BaseQRankSum=-0.840;DP=61;MQRankSum=-2.523;QUALapprox=1005;RAW_GT_COUNT=0,1,0;RAW_MQandDP=202438,61;ReadPosRankSum=0.395;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:23,37,0:60:99:1005,0,578,1074,689,1763:9,14,13,24 +chrX 2737423 . G . . END=2737425 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 2737426 . T TG, 2426.03 . AS_QUALapprox=|2440|0;AS_VarDP=0|60|0;DP=61;QUALapprox=2440;RAW_GT_COUNT=0,0,1;RAW_MQandDP=204102,61;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:2440,181,0,2440,181,2440:0,0,23,37 +chrX 2737427 . G . . END=2737563 GT:DP:GQ:MIN_DP:PL 0/0:64:66:64:0,66,1800 +chrX 2737564 . G A, 891.64 . AS_QUALapprox=|899|0;AS_VarDP=35|34|0;BaseQRankSum=0.410;DP=70;MQRankSum=-0.986;QUALapprox=899;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248929,70;ReadPosRankSum=-0.390;VarDP=69 GT:AD:DP:GQ:PL:SB 0/1:35,34,0:69:99:899,0,885,1003,987,1990:18,17,19,15 +chrX 2737565 . G . . END=2737616 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 2737617 . C A, 713.64 . AS_QUALapprox=|721|0;AS_VarDP=37|30|0;BaseQRankSum=-0.399;DP=68;MQRankSum=0.000;QUALapprox=721;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=0.208;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:37,30,0:67:99:721,0,954,832,1044,1877:20,17,17,13 +chrX 2737618 . C . . END=2737661 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 2737662 . C G, 716.64 . AS_QUALapprox=|724|0;AS_VarDP=25|28|0;BaseQRankSum=-0.314;DP=56;MQRankSum=0.000;QUALapprox=724;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=0.178;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:25,28,0:53:99:724,0,640,799,724,1523:11,14,13,15 +chrX 2737663 . T . . END=2737770 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 2737771 . C T, 618.64 . AS_QUALapprox=|626|0;AS_VarDP=32|24|0;BaseQRankSum=1.517;DP=58;MQRankSum=0.902;QUALapprox=626;RAW_GT_COUNT=0,1,0;RAW_MQandDP=206800,58;ReadPosRankSum=-0.596;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:32,24,0:56:99:626,0,819,722,891,1613:11,21,11,13 +chrX 2737772 . A . . END=2738138 GT:DP:GQ:MIN_DP:PL 0/0:49:84:49:0,84,1072 +chrX 2738139 . T C, 909.64 . AS_QUALapprox=|917|0;AS_VarDP=30|36|0;BaseQRankSum=-1.240;DP=69;MQRankSum=0.000;QUALapprox=917;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=0.631;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:30,36,0:66:99:917,0,782,1007,889,1896:13,17,21,15 +chrX 2738140 . T . . END=2738216 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 2738217 . G A, 891.64 . AS_QUALapprox=|899|0;AS_VarDP=29|32|0;BaseQRankSum=0.182;DP=65;MQRankSum=0.000;QUALapprox=899;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=-0.578;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:29,32,0:61:99:899,0,780,986,876,1862:15,14,18,14 +chrX 2738218 . A . . END=2738393 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 2738394 . G A, 660.64 . AS_QUALapprox=|668|0;AS_VarDP=31|26|0;BaseQRankSum=0.012;DP=62;MQRankSum=0.000;QUALapprox=668;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=-0.072;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:31,26,0:57:99:668,0,832,761,910,1670:16,15,8,18 +chrX 2738395 . T . . END=2738808 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,110,1594 +chrX 2738809 . C T, 1668.06 . AS_QUALapprox=|1682|0;AS_VarDP=0|49|0;DP=50;QUALapprox=1682;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1682,147,0,1682,147,1682:0,0,23,26 +chrX 2738810 . C . . END=2739194 GT:DP:GQ:MIN_DP:PL 0/0:50:95:50:0,95,1241 +chrX 2739195 . A C, 577.64 . AS_QUALapprox=|585|0;AS_VarDP=30|25|0;BaseQRankSum=-1.532;DP=58;MQRankSum=0.000;QUALapprox=585;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-0.034;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:30,25,0:55:99:585,0,799,674,873,1547:14,16,11,14 +chrX 2739196 . A . . END=2739312 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,107,1507 +chrX 2739313 . G T, 1064.64 . AS_QUALapprox=|1072|0;AS_VarDP=24|28|0;BaseQRankSum=0.762;DP=53;MQRankSum=0.000;QUALapprox=1072;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=0.055;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,28,0:52:99:0|1:2739313_G_T:1072,0,824,1144,908,2053:2739313:12,12,11,17 +chrX 2739314 . T . . END=2739336 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 2739337 . A C, 1385.64 . AS_QUALapprox=|1393|0;AS_VarDP=22|39|0;BaseQRankSum=1.168;DP=62;MQRankSum=0.000;QUALapprox=1393;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=-1.503;VarDP=61 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,39,0:61:99:0|1:2739313_G_T:1393,0,719,1459,836,2295:2739313:10,12,21,18 +chrX 2739338 . T . . END=2739444 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 2739445 . A G, 1379.64 . AS_QUALapprox=|1387|0;AS_VarDP=35|38|0;BaseQRankSum=0.214;DP=74;MQRankSum=0.000;QUALapprox=1387;RAW_GT_COUNT=0,1,0;RAW_MQandDP=266400,74;ReadPosRankSum=-0.035;VarDP=73 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:35,38,0:73:99:0|1:2739445_A_G:1387,0,1304,1492,1418,2910:2739445:17,18,19,19 +chrX 2739446 . T . . END=2739459 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 2739460 . T A, 1277.64 . AS_QUALapprox=|1285|0;AS_VarDP=36|34|0;BaseQRankSum=1.728;DP=72;MQRankSum=0.000;QUALapprox=1285;RAW_GT_COUNT=0,1,0;RAW_MQandDP=259200,72;ReadPosRankSum=-0.335;VarDP=70 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:36,34,0:70:99:0|1:2739445_A_G:1285,0,1323,1394,1425,2819:2739445:19,17,17,17 +chrX 2739461 . T . . END=2739911 GT:DP:GQ:MIN_DP:PL 0/0:54:72:54:0,72,1016 +chrX 2739912 . C . . END=2739913 GT:DP:GQ:MIN_DP:PL 0/0:39:10:39:0,10,1032 +chrX 2739914 . A . . END=2739918 GT:DP:GQ:MIN_DP:PL 0/0:39:69:39:0,69,1035 +chrX 2739919 . T . . END=2739919 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,848 +chrX 2739920 . T TA,TAA, 386.02 . AS_QUALapprox=|296|326|0;AS_VarDP=0|6|8|0;DP=33;QUALapprox=403;RAW_GT_COUNT=0,0,1;RAW_MQandDP=116800,33;VarDP=14 GT:AD:DP:GQ:PL:SB 1/2:0,6,8,0:14:77:403,160,107,116,0,77,342,152,114,315:0,0,7,7 +chrX 2739921 . A . . END=2739942 GT:DP:GQ:MIN_DP:PL 0/0:38:51:38:0,51,765 +chrX 2739943 . T . . END=2739945 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,700 +chrX 2739946 . G . . END=2740094 GT:DP:GQ:MIN_DP:PL 0/0:38:28:34:0,28,963 +chrX 2740095 . AAAT A, 957.60 . AS_QUALapprox=|965|0;AS_VarDP=24|25|0;BaseQRankSum=-1.709;DP=62;MQRankSum=0.000;QUALapprox=965;RAW_GT_COUNT=0,1,0;RAW_MQandDP=221625,62;ReadPosRankSum=1.250;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:24,25,0:49:99:965,0,925,1037,1000,2037:12,12,9,16 +chrX 2740099 . A . . END=2740257 GT:DP:GQ:MIN_DP:PL 0/0:64:49:64:0,49,1609 +chrX 2740258 . G A, 1903.06 . AS_QUALapprox=|1917|0;AS_VarDP=2|60|0;BaseQRankSum=-0.431;DP=65;MQRankSum=0.000;QUALapprox=1917;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;ReadPosRankSum=1.296;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:2,60,0:62:99:1917,117,0,2015,188,2284:1,1,32,27 +chrX 2740259 . T . . END=2740274 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 2740275 . G T, 1797.06 . AS_QUALapprox=|1811|0;AS_VarDP=3|57|0;BaseQRankSum=-0.496;DP=61;MQRankSum=0.000;QUALapprox=1811;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;ReadPosRankSum=1.052;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:3,57,0:60:76:1811,76,0,1820,171,1915:1,2,34,23 +chrX 2740276 . A . . END=2740578 GT:DP:GQ:MIN_DP:PL 0/0:64:60:64:0,60,1319 +chrX 2740579 . A AT, 352.60 . AS_QUALapprox=|360|0;AS_VarDP=27|17|0;BaseQRankSum=0.860;DP=48;MQRankSum=0.000;QUALapprox=360;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=-1.085;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:27,17,0:44:99:360,0,677,441,728,1170:9,18,10,7 +chrX 2740580 . T . . END=2740656 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,120,1559 +chrX 2740657 . G A, 555.64 . AS_QUALapprox=|563|0;AS_VarDP=25|22|0;BaseQRankSum=-1.719;DP=48;MQRankSum=0.000;QUALapprox=563;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=0.757;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:25,22,0:47:99:563,0,707,639,773,1411:16,9,12,10 +chrX 2740658 . T . . END=2740741 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,106,1310 +chrX 2740742 . C A, 794.64 . AS_QUALapprox=|802|0;AS_VarDP=27|22|0;BaseQRankSum=-0.216;DP=49;MQRankSum=0.000;QUALapprox=802;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=0.055;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,22,0:49:99:0|1:2740742_C_A:802,0,961,882,1027,1909:2740742:16,11,13,9 +chrX 2740743 . C . . END=2740758 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,120,1800 +chrX 2740759 . T C, 878.64 . AS_QUALapprox=|886|0;AS_VarDP=27|25|0;BaseQRankSum=-1.272;DP=53;MQRankSum=0.000;QUALapprox=886;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=-0.699;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,25,0:52:99:0|1:2740742_C_A:886,0,987,968,1062,2029:2740742:15,12,14,11 +chrX 2740760 . T . . END=2741190 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 2741191 . C T, 619.64 . AS_QUALapprox=|627|0;AS_VarDP=31|26|0;BaseQRankSum=-2.667;DP=58;MQRankSum=0.000;QUALapprox=627;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=0.296;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:31,26,0:57:99:627,0,881,720,958,1678:14,17,9,17 +chrX 2741192 . C . . END=2741909 GT:DP:GQ:MIN_DP:PL 0/0:61:94:61:0,94,1373 +chrX 2741910 . G C, 1083.64 . AS_QUALapprox=|1091|0;AS_VarDP=29|41|0;BaseQRankSum=0.276;DP=74;MQRankSum=0.000;QUALapprox=1091;RAW_GT_COUNT=0,1,0;RAW_MQandDP=266400,74;ReadPosRankSum=0.072;VarDP=70 GT:AD:DP:GQ:PL:SB 0/1:29,41,0:70:99:1091,0,674,1177,796,1973:17,12,12,29 +chrX 2741911 . A . . END=2741962 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 2741963 . A T, 975.64 . AS_QUALapprox=|983|0;AS_VarDP=33|35|0;BaseQRankSum=0.879;DP=71;MQRankSum=0.000;QUALapprox=983;RAW_GT_COUNT=0,1,0;RAW_MQandDP=255600,71;ReadPosRankSum=0.086;VarDP=68 GT:AD:DP:GQ:PL:SB 0/1:33,35,0:68:99:983,0,875,1081,981,2062:22,11,17,18 +chrX 2741964 . T . . END=2742018 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 2742019 . CT C, 205.60 . AS_QUALapprox=|213|0;AS_VarDP=27|15|0;BaseQRankSum=0.902;DP=60;MQRankSum=0.000;QUALapprox=213;RAW_GT_COUNT=0,1,0;RAW_MQandDP=214000,60;ReadPosRankSum=-1.156;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:27,15,0:42:99:213,0,419,292,464,755:17,10,7,8 +chrX 2742021 . T . . END=2742037 GT:DP:GQ:MIN_DP:PL 0/0:69:91:69:0,91,1800 +chrX 2742038 . G . . END=2742038 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,909 +chrX 2742039 . A . . END=2742163 GT:DP:GQ:MIN_DP:PL 0/0:53:40:53:0,40,1400 +chrX 2742164 . C T, 629.64 . AS_QUALapprox=|637|0;AS_VarDP=31|23|0;BaseQRankSum=2.629;DP=57;MQRankSum=0.000;QUALapprox=637;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-1.522;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:31,23,0:54:99:637,0,835,730,904,1634:12,19,5,18 +chrX 2742165 . G . . END=2742606 GT:DP:GQ:MIN_DP:PL 0/0:57:85:57:0,85,1414 +chrX 2742607 . G A, 521.64 . AS_QUALapprox=|529|0;AS_VarDP=24|19|0;BaseQRankSum=1.869;DP=46;MQRankSum=0.000;QUALapprox=529;RAW_GT_COUNT=0,1,0;RAW_MQandDP=164209,46;ReadPosRankSum=-0.673;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:24,19,0:43:99:529,0,650,601,707,1308:12,12,8,11 +chrX 2742608 . T . . END=2742639 GT:DP:GQ:MIN_DP:PL 0/0:39:57:39:0,57,855 +chrX 2742640 . C CTTTT,CTTTTTTT, 637.77 . AS_QUALapprox=|649|555|0;AS_VarDP=1|5|2|0;BaseQRankSum=1.150;DP=44;MQRankSum=-0.319;QUALapprox=654;RAW_GT_COUNT=0,0,1;RAW_MQandDP=145973,44;ReadPosRankSum=-0.489;VarDP=8 GT:AD:DP:GQ:PL:SB 1/2:1,5,2,0:8:5:654,51,5,117,0,99,424,65,143,399:0,1,5,2 +chrX 2742641 . T . . END=2742671 GT:DP:GQ:MIN_DP:PL 0/0:37:42:37:0,42,630 +chrX 2742672 . A . . END=2742672 GT:DP:GQ:MIN_DP:PL 0/0:27:0:27:0,0,532 +chrX 2742673 . C T, 200.64 . AS_QUALapprox=|208|0;AS_VarDP=25|7|0;BaseQRankSum=-1.472;DP=41;MQRankSum=0.000;QUALapprox=208;RAW_GT_COUNT=0,1,0;RAW_MQandDP=140373,41;ReadPosRankSum=0.761;VarDP=32 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,7,0:32:99:0|1:2742673_C_T:208,0,1029,283,1050,1333:2742673:5,20,7,0 +chrX 2742674 . T . . END=2742674 GT:DP:GQ:MIN_DP:PL 0/0:27:63:27:0,63,945 +chrX 2742675 . A T, 194.64 . AS_QUALapprox=|202|0;AS_VarDP=27|7|0;BaseQRankSum=-0.568;DP=37;MQRankSum=-0.076;QUALapprox=202;RAW_GT_COUNT=0,1,0;RAW_MQandDP=125973,37;ReadPosRankSum=0.775;VarDP=34 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,7,0:34:99:0|1:2742673_C_T:202,0,1113,283,1134,1417:2742673:7,20,7,0 +chrX 2742676 . T . . END=2742677 GT:DP:GQ:MIN_DP:PL 0/0:32:69:32:0,69,1035 +chrX 2742678 . C T, 185.64 . AS_QUALapprox=|193|0;AS_VarDP=30|7|0;BaseQRankSum=-1.008;DP=40;MQRankSum=-0.180;QUALapprox=193;RAW_GT_COUNT=0,1,0;RAW_MQandDP=136773,40;ReadPosRankSum=1.068;VarDP=37 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:30,7,0:37:99:0|1:2742673_C_T:193,0,1239,283,1260,1543:2742673:10,20,7,0 +chrX 2742679 . T . . END=2742680 GT:DP:GQ:MIN_DP:PL 0/0:35:81:35:0,81,1215 +chrX 2742681 . C T, 188.64 . AS_QUALapprox=|196|0;AS_VarDP=29|7|0;BaseQRankSum=-1.415;DP=39;MQRankSum=-0.500;QUALapprox=196;RAW_GT_COUNT=0,1,0;RAW_MQandDP=135173,39;ReadPosRankSum=0.165;VarDP=36 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,7,0:36:99:0|1:2742673_C_T:196,0,1197,283,1218,1501:2742673:10,19,7,0 +chrX 2742682 . T . . END=2742685 GT:DP:GQ:MIN_DP:PL 0/0:34:81:34:0,81,1215 +chrX 2742686 . TAC T, 137.60 . AS_QUALapprox=|145|0;AS_VarDP=32|6|0;BaseQRankSum=-2.741;DP=41;MQRankSum=-1.241;QUALapprox=145;RAW_GT_COUNT=0,1,0;RAW_MQandDP=144373,41;ReadPosRankSum=-0.069;VarDP=38 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:32,6,0:38:99:0|1:2742673_C_T:145,0,1326,241,1344,1585:2742673:12,20,6,0 +chrX 2742689 . T . . END=2742689 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1350 +chrX 2742690 . C T, 106.64 . AS_QUALapprox=|114|0;AS_VarDP=32|5|0;BaseQRankSum=-1.981;DP=40;MQRankSum=-2.451;QUALapprox=114;RAW_GT_COUNT=0,1,0;RAW_MQandDP=142609,40;ReadPosRankSum=-0.732;VarDP=37 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:32,5,0:37:99:0|1:2742673_C_T:114,0,1329,210,1344,1554:2742673:13,19,5,0 +chrX 2742691 . T . . END=2742692 GT:DP:GQ:MIN_DP:PL 0/0:34:93:34:0,93,1395 +chrX 2742693 . C T, 58.64 . AS_QUALapprox=|66|0;AS_VarDP=34|4|0;BaseQRankSum=-0.590;DP=41;MQRankSum=-2.830;QUALapprox=66;RAW_GT_COUNT=0,1,0;RAW_MQandDP=146209,41;ReadPosRankSum=-0.504;VarDP=38 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:34,4,0:38:66:0|1:2742673_C_T:66,0,1416,168,1428,1596:2742673:14,20,4,0 +chrX 2742694 . T . . END=2742694 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +chrX 2742695 . G T, 55.64 . AS_QUALapprox=|63|0;AS_VarDP=35|4|0;BaseQRankSum=0.128;DP=42;MQRankSum=-2.874;QUALapprox=63;RAW_GT_COUNT=0,1,0;RAW_MQandDP=149809,42;ReadPosRankSum=-0.500;VarDP=39 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:35,4,0:39:63:0|1:2742673_C_T:63,0,1458,168,1470,1638:2742673:14,21,4,0 +chrX 2742696 . C T, 55.64 . AS_QUALapprox=|63|0;AS_VarDP=35|4|0;BaseQRankSum=0.063;DP=42;MQRankSum=-2.874;QUALapprox=63;RAW_GT_COUNT=0,1,0;RAW_MQandDP=149809,42;ReadPosRankSum=-0.764;VarDP=39 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:35,4,0:39:63:0|1:2742673_C_T:63,0,1458,168,1470,1638:2742673:14,21,4,0 +chrX 2742697 . T . . END=2742698 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,105,1575 +chrX 2742699 . C T, 49.64 . AS_QUALapprox=|57|0;AS_VarDP=37|4|0;BaseQRankSum=-0.406;DP=46;MQRankSum=-2.959;QUALapprox=57;RAW_GT_COUNT=0,1,0;RAW_MQandDP=164209,46;ReadPosRankSum=-1.158;VarDP=41 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:37,4,0:41:57:0|1:2742673_C_T:57,0,1510,168,1522,1690:2742673:14,23,4,0 +chrX 2742700 . T . . END=2742701 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,108,1620 +chrX 2742702 . G T, 49.64 . AS_QUALapprox=|57|0;AS_VarDP=37|4|0;BaseQRankSum=-0.700;DP=46;MQRankSum=-2.959;QUALapprox=57;RAW_GT_COUNT=0,1,0;RAW_MQandDP=164209,46;ReadPosRankSum=-0.899;VarDP=41 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:37,4,0:41:57:0|1:2742673_C_T:57,0,1510,168,1522,1690:2742673:14,23,4,0 +chrX 2742703 . T . . END=2742705 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,117,1755 +chrX 2742706 . A . . END=2742707 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,874 +chrX 2742708 . T . . END=2742708 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,117,1755 +chrX 2742709 . G . . END=2742710 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,1027 +chrX 2742711 . G . . END=2742712 GT:DP:GQ:MIN_DP:PL 0/0:42:42:42:0,42,1093 +chrX 2742713 . C . . END=2742713 GT:DP:GQ:MIN_DP:PL 0/0:41:14:41:0,14,1097 +chrX 2742714 . A . . END=2743650 GT:DP:GQ:MIN_DP:PL 0/0:46:26:43:0,26,1117 +chrX 2743651 . T G, 546.64 . AS_QUALapprox=|554|0;AS_VarDP=21|21|0;BaseQRankSum=-2.331;DP=43;MQRankSum=0.000;QUALapprox=554;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154800,43;ReadPosRankSum=0.730;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:21,21,0:42:99:554,0,604,617,667,1284:11,10,12,9 +chrX 2743652 . T . . END=2743810 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,104,1355 +chrX 2743811 . A G, 1183.64 . AS_QUALapprox=|1191|0;AS_VarDP=33|31|0;BaseQRankSum=-1.161;DP=64;MQRankSum=0.000;QUALapprox=1191;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=1.540;VarDP=64 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:33,31,0:64:99:0|1:2743811_A_G:1191,0,1260,1291,1353,2644:2743811:18,15,17,14 +chrX 2743812 . T . . END=2743814 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 2743815 . A G, 1186.64 . AS_QUALapprox=|1194|0;AS_VarDP=32|31|0;BaseQRankSum=-1.462;DP=64;MQRankSum=0.000;QUALapprox=1194;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=1.980;VarDP=63 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:32,31,0:63:99:0|1:2743811_A_G:1194,0,1229,1291,1323,2613:2743811:18,14,17,14 +chrX 2743816 . T . . END=2743836 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 2743837 . C T, 891.64 . AS_QUALapprox=|899|0;AS_VarDP=29|32|0;BaseQRankSum=1.585;DP=65;MQRankSum=0.000;QUALapprox=899;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=1.250;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:29,32,0:61:99:899,0,739,986,836,1822:15,14,16,16 +chrX 2743838 . G . . END=2744075 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 2744076 . A G, 518.64 . AS_QUALapprox=|526|0;AS_VarDP=28|20|0;BaseQRankSum=1.239;DP=49;MQRankSum=0.000;QUALapprox=526;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=0.931;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:28,20,0:48:99:526,0,775,610,835,1446:14,14,11,9 +chrX 2744077 . G . . END=2744851 GT:DP:GQ:MIN_DP:PL 0/0:60:91:60:0,91,1260 +chrX 2744852 . G A, 884.64 . AS_QUALapprox=|892|0;AS_VarDP=28|35|0;BaseQRankSum=-1.154;DP=64;MQRankSum=0.000;QUALapprox=892;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230049,64;ReadPosRankSum=0.650;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:28,35,0:63:99:892,0,724,976,829,1806:11,17,17,18 +chrX 2744853 . T . . END=2744987 GT:DP:GQ:MIN_DP:PL 0/0:61:85:61:0,85,1472 +chrX 2744988 . T TA, 250.60 . AS_QUALapprox=|258|0;AS_VarDP=19|17|0;BaseQRankSum=-1.911;DP=52;MQRankSum=0.000;QUALapprox=258;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=-0.270;VarDP=36 GT:AD:DP:GQ:PL:SB 0/1:19,17,0:36:99:258,0,306,313,356,669:15,4,6,11 +chrX 2744989 . A . . END=2745413 GT:DP:GQ:MIN_DP:PL 0/0:63:44:63:0,44,1501 +chrX 2745414 . C . . END=2745418 GT:DP:GQ:MIN_DP:PL 0/0:66:0:66:0,0,1422 +chrX 2745419 . G . . END=2745420 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,107,1800 +chrX 2745421 . T . . END=2745421 GT:DP:GQ:MIN_DP:PL 0/0:71:0:71:0,0,1493 +chrX 2745422 . T . . END=2745422 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 2745423 . T . . END=2745426 GT:DP:GQ:MIN_DP:PL 0/0:71:0:71:0,0,1130 +chrX 2745427 . G . . END=2745427 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 2745428 . G . . END=2745432 GT:DP:GQ:MIN_DP:PL 0/0:69:0:69:0,0,1174 +chrX 2745433 . G . . END=2745433 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 2745434 . G . . END=2745434 GT:DP:GQ:MIN_DP:PL 0/0:66:0:66:0,0,1240 +chrX 2745435 . C CTGTGTGTGTGTGTGTG,CTGTGTGTGTGTGTGTGTG, 2052.02 . AS_QUALapprox=|1643|1660|0;AS_VarDP=1|19|20|0;BaseQRankSum=-0.716;DP=66;MQRankSum=0.000;QUALapprox=2069;RAW_GT_COUNT=0,0,1;RAW_MQandDP=235249,66;ReadPosRankSum=0.867;VarDP=40 GT:AD:DP:GQ:PL:SB 1/2:1,19,20,0:40:99:2069,531,426,513,0,409,1619,565,548,1535:0,1,16,23 +chrX 2745436 . T . . END=2745494 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,111,1447 +chrX 2745495 . T A, 512.64 . AS_QUALapprox=|520|0;AS_VarDP=25|20|0;BaseQRankSum=-1.144;DP=46;MQRankSum=0.000;QUALapprox=520;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=-0.331;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:25,20,0:45:99:520,0,710,595,771,1366:11,14,7,13 +chrX 2745496 . T . . END=2745926 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,100,1364 +chrX 2745927 . G A, 1161.64 . AS_QUALapprox=|1169|0;AS_VarDP=27|43|0;BaseQRankSum=-0.878;DP=71;MQRankSum=0.000;QUALapprox=1169;RAW_GT_COUNT=0,1,0;RAW_MQandDP=255600,71;ReadPosRankSum=-0.953;VarDP=70 GT:AD:DP:GQ:PL:SB 0/1:27,43,0:70:99:1169,0,689,1250,817,2068:14,13,20,23 +chrX 2745928 . C . . END=2746231 GT:DP:GQ:MIN_DP:PL 0/0:64:98:64:0,98,1800 +chrX 2746232 . G A, 933.64 . AS_QUALapprox=|941|0;AS_VarDP=21|33|0;BaseQRankSum=1.110;DP=59;MQRankSum=0.000;QUALapprox=941;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-0.071;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:21,33,0:54:99:941,0,498,1003,597,1600:9,12,12,21 +chrX 2746233 . T . . END=2747833 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,102,1433 +chrX 2747834 . C T, 597.64 . AS_QUALapprox=|605|0;AS_VarDP=27|22|0;BaseQRankSum=2.247;DP=52;MQRankSum=-2.222;QUALapprox=605;RAW_GT_COUNT=0,1,0;RAW_MQandDP=170618,52;ReadPosRankSum=-3.167;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:27,22,0:49:99:605,0,711,687,777,1464:14,13,8,14 +chrX 2747835 . G . . END=2747890 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,113,1524 +chrX 2747891 . G A, 464.64 . AS_QUALapprox=|472|0;AS_VarDP=29|19|0;BaseQRankSum=0.114;DP=50;MQRankSum=-2.309;QUALapprox=472;RAW_GT_COUNT=0,1,0;RAW_MQandDP=135409,50;ReadPosRankSum=1.793;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:29,19,0:48:99:472,0,796,559,853,1412:19,10,11,8 +chrX 2747892 . T . . END=2748579 GT:DP:GQ:MIN_DP:PL 0/0:58:59:58:0,59,1210 +chrX 2748580 . CT C, 338.60 . AS_QUALapprox=|346|0;AS_VarDP=24|19|0;BaseQRankSum=-1.124;DP=61;MQRankSum=0.000;QUALapprox=346;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=1.358;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:24,19,0:43:99:346,0,445,416,502,918:16,8,6,13 +chrX 2748582 . T . . END=2748808 GT:DP:GQ:MIN_DP:PL 0/0:47:31:45:0,31,1215 +chrX 2748809 . G A, 687.64 . AS_QUALapprox=|695|0;AS_VarDP=27|26|0;BaseQRankSum=0.013;DP=55;MQRankSum=0.000;QUALapprox=695;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-0.009;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:27,26,0:53:99:695,0,714,776,792,1568:6,21,13,13 +chrX 2748810 . C . . END=2749116 GT:DP:GQ:MIN_DP:PL 0/0:53:87:53:0,87,1285 +chrX 2749117 . TTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC T,TTCCCTCCCTCCC, 353.60 . AS_QUALapprox=|0|361|0;AS_VarDP=13|2|14|0;BaseQRankSum=2.270;DP=49;MQRankSum=-0.832;QUALapprox=361;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165769,49;ReadPosRankSum=-0.592;VarDP=29 GT:AD:DP:GQ:PL:SB 0/2:13,2,14,0:29:99:361,415,1338,0,449,462,455,1157,517,1168:1,12,2,14 +chrX 2749150 . T . . END=2749155 GT:DP:GQ:MIN_DP:PL 0/0:41:0:35:0,0,0 +chrX 2749156 . C . . END=2749235 GT:DP:GQ:MIN_DP:PL 0/0:42:63:42:0,63,945 +chrX 2749236 . C CCCTT, 429.60 . AS_QUALapprox=|437|0;AS_VarDP=8|11|0;BaseQRankSum=0.232;DP=31;MQRankSum=0.000;QUALapprox=437;RAW_GT_COUNT=0,1,0;RAW_MQandDP=111600,31;ReadPosRankSum=-0.744;VarDP=19 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:8,11,0:19:99:0|1:2749236_C_CCCTT:437,0,304,462,337,799:2749236:0,8,2,9 +chrX 2749237 . C . . END=2749279 GT:DP:GQ:MIN_DP:PL 0/0:24:37:23:0,37,720 +chrX 2749280 . T TCCTTTCC, 715.60 . AS_QUALapprox=|723|0;AS_VarDP=11|18|0;BaseQRankSum=1.281;DP=34;MQRankSum=-0.711;QUALapprox=723;RAW_GT_COUNT=0,1,0;RAW_MQandDP=122164,34;ReadPosRankSum=-0.067;VarDP=29 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:11,18,0:29:99:0|1:2749236_C_CCCTT:723,0,408,756,462,1218:2749236:2,9,6,12 +chrX 2749281 . T . . END=2749299 GT:DP:GQ:MIN_DP:PL 0/0:32:67:32:0,67,1062 +chrX 2749300 . T TTGTTTC, 834.60 . AS_QUALapprox=|842|0;AS_VarDP=13|21|0;BaseQRankSum=-1.765;DP=41;MQRankSum=-0.726;QUALapprox=842;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147364,41;ReadPosRankSum=0.745;VarDP=34 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:13,21,0:34:99:0|1:2749236_C_CCCTT:842,0,483,882,546,1428:2749236:6,7,7,14 +chrX 2749301 . T . . END=2749500 GT:DP:GQ:MIN_DP:PL 0/0:56:83:56:0,83,1156 +chrX 2749501 . T C, 1044.64 . AS_QUALapprox=|1052|0;AS_VarDP=22|28|0;BaseQRankSum=-1.657;DP=53;MQRankSum=0.000;QUALapprox=1052;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=0.142;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,28,0:50:99:0|1:2749501_T_C:1052,0,828,1118,913,2031:2749501:14,8,17,11 +chrX 2749502 . C . . END=2749502 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,120,1800 +chrX 2749503 . G A, 1044.64 . AS_QUALapprox=|1052|0;AS_VarDP=22|28|0;BaseQRankSum=0.052;DP=53;MQRankSum=0.000;QUALapprox=1052;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=0.754;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,28,0:50:99:0|1:2749501_T_C:1052,0,828,1118,913,2031:2749501:14,8,17,11 +chrX 2749504 . T . . END=2750076 GT:DP:GQ:MIN_DP:PL 0/0:53:88:53:0,88,1371 +chrX 2750077 . T C, 735.64 . AS_QUALapprox=|743|0;AS_VarDP=27|28|0;BaseQRankSum=-2.263;DP=55;MQRankSum=0.000;QUALapprox=743;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=0.851;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:27,28,0:55:99:743,0,774,824,857,1682:16,11,17,11 +chrX 2750078 . G . . END=2750125 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,107,1400 +chrX 2750126 . G A, 605.64 . AS_QUALapprox=|613|0;AS_VarDP=22|22|0;BaseQRankSum=-0.510;DP=45;MQRankSum=0.000;QUALapprox=613;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=-2.712;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:22,22,0:44:99:613,0,608,679,674,1353:12,10,17,5 +chrX 2750127 . C . . END=2750692 GT:DP:GQ:MIN_DP:PL 0/0:50:21:49:0,21,1369 +chrX 2750693 . T . . END=2750695 GT:DP:GQ:MIN_DP:PL 0/0:70:0:70:0,0,1666 +chrX 2750696 . A ACACACATGCACACG, 1310.60 . AS_QUALapprox=|1318|0;AS_VarDP=20|35|0;BaseQRankSum=-0.357;DP=72;MQRankSum=0.000;QUALapprox=1318;RAW_GT_COUNT=0,1,0;RAW_MQandDP=259200,72;ReadPosRankSum=-1.568;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:20,35,0:55:99:1318,0,706,1381,811,2191:12,8,18,17 +chrX 2750697 . C . . END=2750730 GT:DP:GQ:MIN_DP:PL 0/0:73:99:73:0,120,1800 +chrX 2750731 . C . . END=2750731 GT:DP:GQ:MIN_DP:PL 0/0:62:0:62:0,0,1579 +chrX 2750732 . G . . END=2750744 GT:DP:GQ:MIN_DP:PL 0/0:61:25:56:0,25,1589 +chrX 2750745 . G . . END=2750745 GT:DP:GQ:MIN_DP:PL 0/0:55:0:55:0,0,1406 +chrX 2750746 . A . . END=2751108 GT:DP:GQ:MIN_DP:PL 0/0:58:20:53:0,20,1249 +chrX 2751109 . CA C, 448.60 . AS_QUALapprox=|456|0;AS_VarDP=23|22|0;BaseQRankSum=1.815;DP=55;MQRankSum=0.000;QUALapprox=456;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-0.438;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:23,22,0:45:99:456,0,481,583,610,1548:9,13,7,14 +chrX 2751111 . A . . END=2751621 GT:DP:GQ:MIN_DP:PL 0/0:61:93:61:0,93,1559 +chrX 2751622 . T TGTC, 1080.60 . AS_QUALapprox=|1088|0;AS_VarDP=38|29|0;BaseQRankSum=2.886;DP=71;MQRankSum=-2.596;QUALapprox=1088;RAW_GT_COUNT=0,1,0;RAW_MQandDP=238660,71;ReadPosRankSum=-0.253;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:38,29,0:67:99:1088,0,1508,1202,1596,2798:20,18,17,12 +chrX 2751623 . A . . END=2751903 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 2751904 . C T, 901.64 . AS_QUALapprox=|909|0;AS_VarDP=35|34|0;BaseQRankSum=-0.811;DP=72;MQRankSum=-0.986;QUALapprox=909;RAW_GT_COUNT=0,1,0;RAW_MQandDP=255110,72;ReadPosRankSum=0.138;VarDP=69 GT:AD:DP:GQ:PL:SB 0/1:35,34,0:69:99:909,0,979,1015,1081,2095:23,12,14,20 +chrX 2751905 . G . . END=2752499 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 2752500 . G A, 708.64 . AS_QUALapprox=|716|0;AS_VarDP=24|27|0;BaseQRankSum=-1.333;DP=54;MQRankSum=1.001;QUALapprox=716;RAW_GT_COUNT=0,1,0;RAW_MQandDP=93018,54;ReadPosRankSum=-1.642;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:24,27,0:51:99:716,0,648,788,729,1517:9,15,13,14 +chrX 2752501 . A . . END=2752550 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 2752551 . G T, 1721.06 . AS_QUALapprox=|1735|0;AS_VarDP=0|54|0;DP=55;QUALapprox=1735;RAW_GT_COUNT=0,0,1;RAW_MQandDP=112635,55;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:1735,162,0,1735,162,1735:0,0,23,31 +chrX 2752552 . A . . END=2752630 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 2752631 . A G, 724.64 . AS_QUALapprox=|732|0;AS_VarDP=27|26|0;BaseQRankSum=3.190;DP=53;MQRankSum=-0.716;QUALapprox=732;RAW_GT_COUNT=0,1,0;RAW_MQandDP=136975,53;ReadPosRankSum=0.721;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:27,26,0:53:99:732,0,654,813,732,1545:15,12,10,16 +chrX 2752632 . T . . END=2753243 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 2753244 . G T, 577.64 . AS_QUALapprox=|585|0;AS_VarDP=28|24|0;BaseQRankSum=-2.246;DP=54;MQRankSum=0.913;QUALapprox=585;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158620,54;ReadPosRankSum=0.661;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:28,24,0:52:99:585,0,805,669,876,1546:17,11,14,10 +chrX 2753245 . A . . END=2753626 GT:DP:GQ:MIN_DP:PL 0/0:61:85:61:0,85,1276 +chrX 2753627 . G C, 391.64 . AS_QUALapprox=|399|0;AS_VarDP=27|20|0;BaseQRankSum=-3.291;DP=51;MQRankSum=0.000;QUALapprox=399;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=1.712;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:27,20,0:47:99:399,0,767,481,826,1306:14,13,7,13 +chrX 2753628 . G . . END=2753726 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 2753727 . T C, 432.64 . AS_QUALapprox=|440|0;AS_VarDP=36|17|0;BaseQRankSum=0.476;DP=54;MQRankSum=-2.975;QUALapprox=440;RAW_GT_COUNT=0,1,0;RAW_MQandDP=189181,54;ReadPosRankSum=-0.915;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:36,17,0:53:99:440,0,1032,548,1083,1631:19,17,8,9 +chrX 2753728 . G . . END=2753911 GT:DP:GQ:MIN_DP:PL 0/0:55:93:55:0,93,1550 +chrX 2753912 . G A, 732.64 . AS_QUALapprox=|740|0;AS_VarDP=28|28|0;BaseQRankSum=-0.049;DP=57;MQRankSum=-2.037;QUALapprox=740;RAW_GT_COUNT=0,1,0;RAW_MQandDP=204147,57;ReadPosRankSum=1.033;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:28,28,0:56:99:740,0,755,824,839,1662:14,14,15,13 +chrX 2753913 . T . . END=2754173 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 2754174 . C G, 918.64 . AS_QUALapprox=|926|0;AS_VarDP=31|36|0;BaseQRankSum=-1.085;DP=70;MQRankSum=0.635;QUALapprox=926;RAW_GT_COUNT=0,1,0;RAW_MQandDP=250144,70;ReadPosRankSum=0.352;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:31,36,0:67:99:926,0,837,1019,944,1963:13,18,26,10 +chrX 2754175 . T . . END=2754650 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 2754651 . G A, 995.64 . AS_QUALapprox=|1003|0;AS_VarDP=32|36|0;BaseQRankSum=2.069;DP=69;MQRankSum=-0.648;QUALapprox=1003;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226312,69;ReadPosRankSum=0.406;VarDP=68 GT:AD:DP:GQ:PL:SB 0/1:32,36,0:68:99:1003,0,803,1098,911,2009:16,16,15,21 +chrX 2754652 . A . . END=2755056 GT:DP:GQ:MIN_DP:PL 0/0:57:85:57:0,85,1072 +chrX 2755057 . C T, 685.64 . AS_QUALapprox=|693|0;AS_VarDP=17|25|0;BaseQRankSum=-0.075;DP=46;MQRankSum=-5.376;QUALapprox=693;RAW_GT_COUNT=0,1,0;RAW_MQandDP=120908,46;ReadPosRankSum=0.372;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:17,25,0:42:99:693,0,419,744,494,1238:8,9,15,10 +chrX 2755058 . G . . END=2755161 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,112,1326 +chrX 2755162 . G A, 690.64 . AS_QUALapprox=|698|0;AS_VarDP=23|27|0;BaseQRankSum=-3.012;DP=51;MQRankSum=-2.524;QUALapprox=698;RAW_GT_COUNT=0,1,0;RAW_MQandDP=166905,51;ReadPosRankSum=-2.035;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:23,27,0:50:99:698,0,649,767,730,1498:15,8,14,13 +chrX 2755163 . C . . END=2755880 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,103,1415 +chrX 2755881 . T C, 769.64 . AS_QUALapprox=|777|0;AS_VarDP=31|31|0;BaseQRankSum=-1.514;DP=64;MQRankSum=-7.071;QUALapprox=777;RAW_GT_COUNT=0,1,0;RAW_MQandDP=152260,64;ReadPosRankSum=-0.465;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:31,31,0:62:99:777,0,872,870,964,1834:18,13,19,12 +chrX 2755882 . G . . END=2756234 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,118,1800 +chrX 2756235 . C T, 714.64 . AS_QUALapprox=|722|0;AS_VarDP=32|27|0;BaseQRankSum=-0.192;DP=60;MQRankSum=-2.433;QUALapprox=722;RAW_GT_COUNT=0,1,0;RAW_MQandDP=207891,60;ReadPosRankSum=-0.662;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:32,27,0:59:99:722,0,880,817,961,1779:20,12,11,16 +chrX 2756236 . A . . END=2756705 GT:DP:GQ:MIN_DP:PL 0/0:57:95:57:0,95,1380 +chrX 2756706 . G C, 966.64 . AS_QUALapprox=|974|0;AS_VarDP=24|35|0;BaseQRankSum=2.600;DP=61;MQRankSum=0.000;QUALapprox=974;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=1.459;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:24,35,0:59:99:974,0,531,1045,636,1681:16,8,22,13 +chrX 2756707 . C . . END=2757420 GT:DP:GQ:MIN_DP:PL 0/0:59:94:59:0,94,1455 +chrX 2757421 . G C, 1346.06 . AS_QUALapprox=|1360|0;AS_VarDP=0|40|0;DP=43;QUALapprox=1360;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154449,43;VarDP=40 GT:AD:DP:GQ:PL:SB 1/1:0,40,0:40:99:1360,120,0,1360,120,1360:0,0,17,23 +chrX 2757422 . T . . END=2757970 GT:DP:GQ:MIN_DP:PL 0/0:56:64:56:0,64,986 +chrX 2757971 . CAAAAAAAAAAAAA C,CAAAAAA, 943.02 . AS_QUALapprox=|554|403|0;AS_VarDP=1|15|12|0;DP=45;MQRankSum=-0.756;QUALapprox=960;RAW_GT_COUNT=0,0,1;RAW_MQandDP=134421,45;VarDP=28 GT:AD:DP:GQ:PL:SB 1/2:1,15,12,0:28:99:960,406,765,557,0,570,999,634,615,1210:0,1,15,12 +chrX 2757985 . A . . END=2758118 GT:DP:GQ:MIN_DP:PL 0/0:60:86:60:0,86,1305 +chrX 2758119 . T C, 705.64 . AS_QUALapprox=|713|0;AS_VarDP=27|28|0;BaseQRankSum=-1.256;DP=57;MQRankSum=-0.946;QUALapprox=713;RAW_GT_COUNT=0,1,0;RAW_MQandDP=203840,57;ReadPosRankSum=0.480;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:27,28,0:55:99:713,0,733,794,817,1611:18,9,16,12 +chrX 2758120 . G . . END=2758873 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,99,1430 +chrX 2758874 . C G, 2152.06 . AS_QUALapprox=|2166|0;AS_VarDP=0|70|0;DP=72;QUALapprox=2166;RAW_GT_COUNT=0,0,1;RAW_MQandDP=251758,72;VarDP=70 GT:AD:DP:GQ:PL:SB 1/1:0,70,0:70:99:2166,208,0,2166,208,2166:0,0,40,30 +chrX 2758875 . A . . END=2758955 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 2758956 . T TTATC, 2668.03 . AS_QUALapprox=|2682|0;AS_VarDP=0|61|0;DP=71;QUALapprox=2682;RAW_GT_COUNT=0,0,1;RAW_MQandDP=254916,71;VarDP=61 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:2682,183,0,2683,183,2683:0,0,35,26 +chrX 2758957 . T . . END=2759031 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 2759032 . GTATC G, 2490.03 . AS_QUALapprox=|2504|0;AS_VarDP=0|57|0;DP=62;QUALapprox=2504;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205422,62;VarDP=57 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,57,0:57:99:0|1:2759032_GTATC_G:2504,172,0,2504,172,2504:2759032:0,0,31,26 +chrX 2759037 . T . . END=2759049 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 2759050 . G A, 2565.06 . AS_QUALapprox=|2579|0;AS_VarDP=1|60|0;BaseQRankSum=2.340;DP=62;MQRankSum=1.241;QUALapprox=2579;RAW_GT_COUNT=0,0,1;RAW_MQandDP=196754,62;ReadPosRankSum=1.615;VarDP=61 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:1,60,0:61:99:0|1:2759032_GTATC_G:2579,174,0,2582,181,2588:2759032:0,1,33,27 +chrX 2759051 . T . . END=2759092 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 2759093 . G A, 2628.06 . AS_QUALapprox=|2642|0;AS_VarDP=0|61|0;DP=62;QUALapprox=2642;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194397,62;VarDP=61 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,61,0:61:99:0|1:2759093_G_A:2642,184,0,2642,184,2642:2759093:0,0,35,26 +chrX 2759094 . T . . END=2759112 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 2759113 . A T, 2870.06 . AS_QUALapprox=|2884|0;AS_VarDP=0|65|0;DP=65;QUALapprox=2884;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205197,65;VarDP=65 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,65,0:65:99:0|1:2759093_G_A:2884,196,0,2884,196,2884:2759093:0,0,37,28 +chrX 2759114 . G . . END=2759120 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 2759121 . T C, 2925.06 . AS_QUALapprox=|2939|0;AS_VarDP=0|66|0;DP=66;QUALapprox=2939;RAW_GT_COUNT=0,0,1;RAW_MQandDP=210281,66;VarDP=66 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,66,0:66:99:0|1:2759093_G_A:2939,199,0,2939,199,2939:2759093:0,0,35,31 +chrX 2759122 . T . . END=2759131 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 2759132 . G A, 2499.06 . AS_QUALapprox=|2513|0;AS_VarDP=0|57|0;DP=57;QUALapprox=2513;RAW_GT_COUNT=0,0,1;RAW_MQandDP=177881,57;VarDP=57 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,57,0:57:99:0|1:2759093_G_A:2513,172,0,2513,172,2513:2759093:0,0,32,25 +chrX 2759133 . A . . END=2759954 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,103,1420 +chrX 2759955 . T TCTGCATGTGGC, 1371.60 . AS_QUALapprox=|1379|0;AS_VarDP=30|35|0;BaseQRankSum=0.605;DP=67;MQRankSum=0.000;QUALapprox=1379;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=0.355;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:30,35,0:65:99:1379,0,1155,1470,1260,2730:18,12,21,14 +chrX 2759956 . C . . END=2760578 GT:DP:GQ:MIN_DP:PL 0/0:36:28:34:0,28,881 +chrX 2760579 . C CA, 535.60 . AS_QUALapprox=|543|0;AS_VarDP=6|28|0;BaseQRankSum=0.435;DP=40;MQRankSum=-0.780;QUALapprox=543;RAW_GT_COUNT=0,1,0;RAW_MQandDP=141533,40;ReadPosRankSum=0.384;VarDP=34 GT:AD:DP:GQ:PL:SB 0/1:6,28,0:34:44:543,0,44,561,128,688:4,2,17,11 +chrX 2760580 . A . . END=2760733 GT:DP:GQ:MIN_DP:PL 0/0:30:38:29:0,38,813 +chrX 2760734 . CAAA C, 823.69 . AS_QUALapprox=|831|0;AS_VarDP=4|24|0;DP=47;MQRankSum=-0.306;QUALapprox=831;RAW_GT_COUNT=0,1,0;RAW_MQandDP=166201,47;VarDP=28 GT:AD:DP:GQ:PL:SB 0/1:4,24,0:28:7:831,0,7,843,79,923:0,4,16,8 +chrX 2760738 . A . . END=2761907 GT:DP:GQ:MIN_DP:PL 0/0:52:38:50:0,38,1067 +chrX 2761908 . G T, 1713.06 . AS_QUALapprox=|1727|0;AS_VarDP=0|53|0;DP=54;QUALapprox=1727;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183108,54;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1727,159,0,1727,159,1727:0,0,30,23 +chrX 2761909 . C . . END=2762115 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 2762116 . G A, 1911.06 . AS_QUALapprox=|1925|0;AS_VarDP=0|57|0;DP=57;QUALapprox=1925;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1925,171,0,1925,171,1925:0,0,26,31 +chrX 2762117 . T . . END=2762143 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 2762144 . C T, 1866.06 . AS_QUALapprox=|1880|0;AS_VarDP=0|55|0;DP=55;QUALapprox=1880;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1880,165,0,1880,165,1880:0,0,25,30 +chrX 2762145 . G . . END=2763470 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,101,1583 +chrX 2763471 . A G, 1657.06 . AS_QUALapprox=|1671|0;AS_VarDP=0|53|0;DP=58;QUALapprox=1671;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1671,158,0,1671,158,1671:0,0,36,17 +chrX 2763472 . T . . END=2763509 GT:DP:GQ:MIN_DP:PL 0/0:49:82:49:0,82,1269 +chrX 2763510 . C G, 1530.06 . AS_QUALapprox=|1544|0;AS_VarDP=0|47|0;DP=49;QUALapprox=1544;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1544,141,0,1544,141,1544:0,0,32,15 +chrX 2763511 . G . . END=2763789 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 2763790 . T A, 1663.06 . AS_QUALapprox=|1677|0;AS_VarDP=0|51|0;DP=52;QUALapprox=1677;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1677,153,0,1677,153,1677:0,0,27,24 +chrX 2763791 . G . . END=2763836 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,109,1488 +chrX 2763837 . A G, 1564.06 . AS_QUALapprox=|1578|0;AS_VarDP=0|48|0;DP=48;QUALapprox=1578;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=48 GT:AD:DP:GQ:PL:SB 1/1:0,48,0:48:99:1578,143,0,1578,143,1578:0,0,26,22 +chrX 2763838 . T . . END=2763924 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,113,1687 +chrX 2763925 . G C, 1897.06 . AS_QUALapprox=|1911|0;AS_VarDP=0|58|0;DP=58;QUALapprox=1911;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208564,58;VarDP=58 GT:AD:DP:GQ:PL:SB 1/1:0,58,0:58:99:1911,174,0,1911,174,1911:0,0,27,31 +chrX 2763926 . T . . END=2763976 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 2763977 . G A, 2046.06 . AS_QUALapprox=|2060|0;AS_VarDP=0|61|0;DP=62;QUALapprox=2060;RAW_GT_COUNT=0,0,1;RAW_MQandDP=218458,62;VarDP=61 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:2060,183,0,2060,183,2060:0,0,28,33 +chrX 2763978 . G . . END=2764107 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,110,1572 +chrX 2764108 . T C, 1350.06 . AS_QUALapprox=|1364|0;AS_VarDP=0|42|0;DP=45;QUALapprox=1364;RAW_GT_COUNT=0,0,1;RAW_MQandDP=141198,45;VarDP=42 GT:AD:DP:GQ:PL:SB 1/1:0,42,0:42:99:1364,126,0,1364,126,1364:0,0,20,22 +chrX 2764109 . G . . END=2764134 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,110,1404 +chrX 2764135 . T G, 1652.06 . AS_QUALapprox=|1666|0;AS_VarDP=1|51|0;BaseQRankSum=2.534;DP=53;MQRankSum=-0.337;QUALapprox=1666;RAW_GT_COUNT=0,0,1;RAW_MQandDP=177917,53;ReadPosRankSum=-0.033;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:1,51,0:52:99:1666,146,0,1668,153,1675:1,0,24,27 +chrX 2764136 . G . . END=2764872 GT:DP:GQ:MIN_DP:PL 0/0:60:86:60:0,86,1443 +chrX 2764873 . A T, 1012.64 . AS_QUALapprox=|1020|0;AS_VarDP=20|26|0;BaseQRankSum=0.016;DP=47;MQRankSum=-0.833;QUALapprox=1020;RAW_GT_COUNT=0,1,0;RAW_MQandDP=167200,47;ReadPosRankSum=1.611;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:20,26,0:46:99:0|1:2764873_A_T:1020,0,751,1081,829,1909:2764873:8,12,12,14 +chrX 2764874 . T C, 1012.64 . AS_QUALapprox=|1020|0;AS_VarDP=20|26|0;BaseQRankSum=0.928;DP=46;MQRankSum=-0.833;QUALapprox=1020;RAW_GT_COUNT=0,1,0;RAW_MQandDP=163600,46;ReadPosRankSum=1.386;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:20,26,0:46:99:0|1:2764873_A_T:1020,0,751,1081,829,1909:2764873:8,12,12,14 +chrX 2764875 . T . . END=2765030 GT:DP:GQ:MIN_DP:PL 0/0:46:95:46:0,95,1189 +chrX 2765031 . A . . END=2765031 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,1044 +chrX 2765032 . T . . END=2765039 GT:DP:GQ:MIN_DP:PL 0/0:45:47:45:0,47,1117 +chrX 2765040 . C . . END=2765040 GT:DP:GQ:MIN_DP:PL 0/0:46:10:46:0,10,1132 +chrX 2765041 . C CA, 109.60 . AS_QUALapprox=|117|0;AS_VarDP=14|12|0;BaseQRankSum=-0.962;DP=42;MQRankSum=-1.502;QUALapprox=117;RAW_GT_COUNT=0,1,0;RAW_MQandDP=148717,42;ReadPosRankSum=-1.007;VarDP=26 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:14,12,0:26:99:0|1:2765041_C_CA:117,0,360,159,394,553:2765041:8,6,5,7 +chrX 2765042 . A . . END=2765056 GT:DP:GQ:MIN_DP:PL 0/0:36:66:36:0,66,990 +chrX 2765057 . A AG, 450.60 . AS_QUALapprox=|458|0;AS_VarDP=19|18|0;BaseQRankSum=0.363;DP=40;MQRankSum=1.765;QUALapprox=458;RAW_GT_COUNT=0,1,0;RAW_MQandDP=138621,40;ReadPosRankSum=-0.547;VarDP=37 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:19,18,0:37:99:1|0:2765041_C_CA:458,0,446,514,500,1014:2765041:9,10,12,6 +chrX 2765058 . A . . END=2765123 GT:DP:GQ:MIN_DP:PL 0/0:48:60:48:0,60,1241 +chrX 2765124 . G A, 467.64 . AS_QUALapprox=|475|0;AS_VarDP=24|18|0;BaseQRankSum=0.740;DP=45;MQRankSum=-0.138;QUALapprox=475;RAW_GT_COUNT=0,1,0;RAW_MQandDP=160313,45;ReadPosRankSum=-0.460;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:24,18,0:42:99:475,0,923,547,977,1524:14,10,12,6 +chrX 2765125 . A . . END=2765151 GT:DP:GQ:MIN_DP:PL 0/0:43:95:43:0,95,1261 +chrX 2765152 . C G, 954.64 . AS_QUALapprox=|962|0;AS_VarDP=19|25|0;BaseQRankSum=-0.439;DP=45;MQRankSum=0.197;QUALapprox=962;RAW_GT_COUNT=0,1,0;RAW_MQandDP=160313,45;ReadPosRankSum=-0.024;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:19,25,0:44:99:0|1:2765152_C_G:962,0,697,1019,772,1791:2765152:12,7,15,10 +chrX 2765153 . C . . END=2765184 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,120,1800 +chrX 2765185 . A C, 1250.64 . AS_QUALapprox=|1258|0;AS_VarDP=25|32|0;BaseQRankSum=-0.649;DP=58;MQRankSum=-0.849;QUALapprox=1258;RAW_GT_COUNT=0,1,0;RAW_MQandDP=207904,58;ReadPosRankSum=0.305;VarDP=57 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,32,0:57:99:0|1:2765152_C_G:1258,0,953,1333,1050,2383:2765152:15,10,18,14 +chrX 2765186 . A . . END=2765199 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 2765200 . A G, 1006.64 . AS_QUALapprox=|1014|0;AS_VarDP=26|26|0;BaseQRankSum=0.404;DP=55;MQRankSum=0.000;QUALapprox=1014;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=0.471;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,26,0:52:99:0|1:2765152_C_G:1014,0,952,1092,1031,2122:2765152:15,11,16,10 +chrX 2765201 . G . . END=2765256 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,111,1300 +chrX 2765257 . G A, 585.64 . AS_QUALapprox=|593|0;AS_VarDP=25|22|0;BaseQRankSum=0.242;DP=47;MQRankSum=0.000;QUALapprox=593;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=-0.597;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:25,22,0:47:99:593,0,922,669,988,1657:11,14,8,14 +chrX 2765258 . G . . END=2765282 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,120,1800 +chrX 2765283 . A G, 580.64 . AS_QUALapprox=|588|0;AS_VarDP=22|22|0;BaseQRankSum=-0.039;DP=44;MQRankSum=0.000;QUALapprox=588;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=0.928;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:22,22,0:44:99:588,0,828,654,893,1547:7,15,10,12 +chrX 2765284 . G . . END=2765375 GT:DP:GQ:MIN_DP:PL 0/0:50:96:50:0,96,1395 +chrX 2765376 . GGGAAGGAA G, 652.60 . AS_QUALapprox=|660|0;AS_VarDP=20|18|0;BaseQRankSum=0.708;DP=49;MQRankSum=0.000;QUALapprox=660;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=-0.966;VarDP=38 GT:AD:DP:GQ:PL:SB 0/1:20,18,0:38:99:660,0,785,721,840,1560:11,9,9,9 +chrX 2765385 . G . . END=2765768 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,105,1634 +chrX 2765769 . A G, 781.64 . AS_QUALapprox=|789|0;AS_VarDP=38|30|0;BaseQRankSum=0.995;DP=68;MQRankSum=0.000;QUALapprox=789;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=-0.649;VarDP=68 GT:AD:DP:GQ:PL:SB 0/1:38,30,0:68:99:789,0,1001,903,1092,1994:17,21,18,12 +chrX 2765770 . T . . END=2766149 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 2766150 . C CT, 410.60 . AS_QUALapprox=|418|0;AS_VarDP=28|22|0;BaseQRankSum=-1.572;DP=56;MQRankSum=0.000;QUALapprox=418;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-0.782;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:28,22,0:50:99:418,0,652,502,717,1219:11,17,14,8 +chrX 2766151 . T . . END=2766175 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,108,1484 +chrX 2766176 . C G, 748.64 . AS_QUALapprox=|756|0;AS_VarDP=24|28|0;BaseQRankSum=-1.277;DP=55;MQRankSum=-0.887;QUALapprox=756;RAW_GT_COUNT=0,1,0;RAW_MQandDP=196000,55;ReadPosRankSum=1.240;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:24,28,0:52:99:756,0,657,828,741,1570:11,13,14,14 +chrX 2766177 . T . . END=2766286 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,112,1435 +chrX 2766287 . C T, 769.64 . AS_QUALapprox=|777|0;AS_VarDP=34|30|0;BaseQRankSum=1.377;DP=66;MQRankSum=0.000;QUALapprox=777;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=1.036;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:34,30,0:64:99:777,0,825,878,915,1793:16,18,17,13 +chrX 2766288 . G . . END=2766502 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 2766503 . TG T, 1579.03 . AS_QUALapprox=|1593|0;AS_VarDP=0|50|0;DP=52;QUALapprox=1593;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1593,150,0,1593,150,1593:0,0,20,30 +chrX 2766505 . G . . END=2766556 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 2766557 . CTTTTT C,CT, 961.02 . AS_QUALapprox=|752|775|0;AS_VarDP=0|14|12|0;DP=59;QUALapprox=978;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208096,59;VarDP=26 GT:AD:DP:GQ:PL:SB 1/2:0,14,12,0:26:99:978,234,226,281,0,203,784,267,287,748:0,0,18,8 +chrX 2766563 . T . . END=2766576 GT:DP:GQ:MIN_DP:PL 0/0:61:90:61:0,90,1350 +chrX 2766577 . T . . END=2766583 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,994 +chrX 2766584 . A . . END=2766657 GT:DP:GQ:MIN_DP:PL 0/0:44:49:44:0,49,1146 +chrX 2766658 . G A, 1276.06 . AS_QUALapprox=|1290|0;AS_VarDP=0|39|0;DP=43;QUALapprox=1290;RAW_GT_COUNT=0,0,1;RAW_MQandDP=137720,43;VarDP=39 GT:AD:DP:GQ:PL:SB 1/1:0,39,0:39:99:1290,117,0,1290,117,1290:0,0,16,23 +chrX 2766659 . G . . END=2766747 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 2766748 . C G, 2244.06 . AS_QUALapprox=|2258|0;AS_VarDP=0|57|0;DP=60;QUALapprox=2258;RAW_GT_COUNT=0,0,1;RAW_MQandDP=132783,60;VarDP=57 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,57,0:57:99:0|1:2766748_C_G:2258,172,0,2258,172,2258:2766748:0,0,28,29 +chrX 2766749 . T . . END=2766755 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 2766756 . G A, 866.64 . AS_QUALapprox=|874|0;AS_VarDP=26|32|0;BaseQRankSum=1.336;DP=62;MQRankSum=-1.732;QUALapprox=874;RAW_GT_COUNT=0,1,0;RAW_MQandDP=141983,62;ReadPosRankSum=1.057;VarDP=58 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,32,0:58:99:0|1:2766748_C_G:874,0,635,951,731,1682:2766748:14,12,15,17 +chrX 2766757 . G . . END=2767105 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 2767106 . G A, 989.64 . AS_QUALapprox=|997|0;AS_VarDP=28|37|0;BaseQRankSum=0.176;DP=65;MQRankSum=0.000;QUALapprox=997;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=0.928;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:28,37,0:65:99:997,0,674,1079,785,1864:13,15,23,14 +chrX 2767107 . T . . END=2767212 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 2767213 . T C, 2980.06 . AS_QUALapprox=|2994|0;AS_VarDP=0|68|0;DP=70;QUALapprox=2994;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;VarDP=68 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,68,0:68:99:0|1:2767213_T_C:2994,205,0,2994,205,2994:2767213:0,0,34,34 +chrX 2767214 . C . . END=2767219 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 2767220 . G A, 2880.06 . AS_QUALapprox=|2894|0;AS_VarDP=0|65|0;DP=65;QUALapprox=2894;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=65 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,65,0:65:99:0|1:2767213_T_C:2894,196,0,2894,196,2894:2767213:0,0,32,33 +chrX 2767221 . G . . END=2767766 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 2767767 . G A, 895.64 . AS_QUALapprox=|903|0;AS_VarDP=35|33|0;BaseQRankSum=1.673;DP=69;MQRankSum=0.000;QUALapprox=903;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=-0.896;VarDP=68 GT:AD:DP:GQ:PL:SB 0/1:35,33,0:68:99:903,0,931,1008,1030,2038:16,19,18,15 +chrX 2767768 . G . . END=2768077 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 2768078 . C T, 983.64 . AS_QUALapprox=|991|0;AS_VarDP=27|36|0;BaseQRankSum=-0.722;DP=65;MQRankSum=-3.314;QUALapprox=991;RAW_GT_COUNT=0,1,0;RAW_MQandDP=213869,65;ReadPosRankSum=0.625;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:27,36,0:63:99:991,0,689,1072,797,1869:13,14,12,24 +chrX 2768079 . C . . END=2768123 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 2768124 . A G, 774.64 . AS_QUALapprox=|782|0;AS_VarDP=29|28|0;BaseQRankSum=1.497;DP=60;MQRankSum=-4.671;QUALapprox=782;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201667,60;ReadPosRankSum=0.807;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:29,28,0:57:99:782,0,759,869,844,1713:14,15,10,18 +chrX 2768125 . C . . END=2768460 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 2768461 . C T, 1356.64 . AS_QUALapprox=|1364|0;AS_VarDP=26|47|0;BaseQRankSum=0.181;DP=74;MQRankSum=-0.715;QUALapprox=1364;RAW_GT_COUNT=0,1,0;RAW_MQandDP=265609,74;ReadPosRankSum=-0.161;VarDP=73 GT:AD:DP:GQ:PL:SB 0/1:26,47,0:73:99:1364,0,640,1441,781,2222:15,11,23,24 +chrX 2768462 . A . . END=2768544 GT:DP:GQ:MIN_DP:PL 0/0:73:99:73:0,120,1800 +chrX 2768545 . G A, 1077.64 . AS_QUALapprox=|1085|0;AS_VarDP=35|43|0;BaseQRankSum=-1.949;DP=78;MQRankSum=-1.266;QUALapprox=1085;RAW_GT_COUNT=0,1,0;RAW_MQandDP=279773,78;ReadPosRankSum=-1.282;VarDP=78 GT:AD:DP:GQ:PL:SB 0/1:35,43,0:78:99:1085,0,929,1189,1057,2246:20,15,23,20 +chrX 2768546 . T . . END=2768824 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 2768825 . T G, 567.64 . AS_QUALapprox=|575|0;AS_VarDP=28|22|0;BaseQRankSum=0.044;DP=52;MQRankSum=0.000;QUALapprox=575;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=-0.694;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:28,22,0:50:99:575,0,758,659,824,1483:11,17,11,11 +chrX 2768826 . G . . END=2769280 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,118,1473 +chrX 2769281 . T C, 2136.06 . AS_QUALapprox=|2150|0;AS_VarDP=0|64|0;DP=64;QUALapprox=2150;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=64 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:2150,192,0,2150,192,2150:0,0,28,36 +chrX 2769282 . A . . END=2769516 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 2769517 . A G, 750.64 . AS_QUALapprox=|758|0;AS_VarDP=31|29|0;BaseQRankSum=-0.435;DP=61;MQRankSum=0.000;QUALapprox=758;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=0.562;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:31,29,0:60:99:758,0,837,851,924,1775:11,20,15,14 +chrX 2769518 . T . . END=2770015 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,110,1434 +chrX 2770016 . T . . END=2770016 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,1181 +chrX 2770017 . G . . END=2770018 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 2770019 . A . . END=2770019 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,957 +chrX 2770020 . G . . END=2770023 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 2770024 . T . . END=2770024 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,877 +chrX 2770025 . G . . END=2770247 GT:DP:GQ:MIN_DP:PL 0/0:61:68:46:0,68,957 +chrX 2770248 . A T, 881.64 . AS_QUALapprox=|889|0;AS_VarDP=25|31|0;BaseQRankSum=0.240;DP=59;MQRankSum=0.000;QUALapprox=889;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-0.239;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:25,31,0:56:99:889,0,681,964,774,1738:13,12,17,14 +chrX 2770249 . G . . END=2770409 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,113,1554 +chrX 2770410 . T C, 606.64 . AS_QUALapprox=|614|0;AS_VarDP=24|23|0;BaseQRankSum=1.009;DP=49;MQRankSum=1.022;QUALapprox=614;RAW_GT_COUNT=0,1,0;RAW_MQandDP=174400,49;ReadPosRankSum=0.170;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:24,23,0:47:99:614,0,604,686,672,1358:17,7,10,13 +chrX 2770411 . G . . END=2770500 GT:DP:GQ:MIN_DP:PL 0/0:53:85:53:0,85,1439 +chrX 2770501 . T C, 755.64 . AS_QUALapprox=|763|0;AS_VarDP=28|27|0;BaseQRankSum=1.010;DP=55;MQRankSum=0.000;QUALapprox=763;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-1.726;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:28,27,0:55:99:763,0,778,847,859,1706:15,13,14,13 +chrX 2770502 . C . . END=2770917 GT:DP:GQ:MIN_DP:PL 0/0:57:86:57:0,86,1364 +chrX 2770918 . T C, 868.64 . AS_QUALapprox=|876|0;AS_VarDP=40|34|0;BaseQRankSum=-0.919;DP=77;MQRankSum=0.000;QUALapprox=876;RAW_GT_COUNT=0,1,0;RAW_MQandDP=277200,77;ReadPosRankSum=-0.277;VarDP=74 GT:AD:DP:GQ:PL:SB 0/1:40,34,0:74:99:876,0,1105,996,1208,2204:22,18,18,16 +chrX 2770919 . T . . END=2771108 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 2771109 . T C, 1910.06 . AS_QUALapprox=|1924|0;AS_VarDP=0|58|0;DP=58;QUALapprox=1924;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=58 GT:AD:DP:GQ:PL:SB 1/1:0,58,0:58:99:1924,174,0,1924,174,1924:0,0,27,31 +chrX 2771110 . T . . END=2771258 GT:DP:GQ:MIN_DP:PL 0/0:50:60:50:0,60,1201 +chrX 2771259 . A T, 617.64 . AS_QUALapprox=|625|0;AS_VarDP=20|23|0;BaseQRankSum=0.992;DP=45;MQRankSum=0.000;QUALapprox=625;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=-1.084;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:20,23,0:43:99:625,0,555,685,624,1309:7,13,12,11 +chrX 2771260 . G . . END=2771492 GT:DP:GQ:MIN_DP:PL 0/0:49:58:49:0,58,1288 +chrX 2771493 . T A, 540.64 . AS_QUALapprox=|548|0;AS_VarDP=30|22|0;BaseQRankSum=-1.234;DP=54;MQRankSum=0.000;QUALapprox=548;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=-0.019;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:30,22,0:52:99:548,0,847,639,913,1551:11,19,11,11 +chrX 2771494 . C . . END=2771533 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 2771534 . G A, 748.64 . AS_QUALapprox=|756|0;AS_VarDP=26|28|0;BaseQRankSum=0.070;DP=56;MQRankSum=0.000;QUALapprox=756;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-0.398;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:26,28,0:54:99:756,0,701,834,785,1619:10,16,11,17 +chrX 2771535 . A . . END=2771844 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 2771845 . A C, 1007.64 . AS_QUALapprox=|1015|0;AS_VarDP=24|35|0;BaseQRankSum=0.193;DP=61;MQRankSum=-3.469;QUALapprox=1015;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194883,61;ReadPosRankSum=1.335;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:24,35,0:59:99:1015,0,612,1087,717,1804:9,15,20,15 +chrX 2771846 . A . . END=2772268 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,106,1443 +chrX 2772269 . T C, 774.64 . AS_QUALapprox=|782|0;AS_VarDP=34|30|0;BaseQRankSum=-0.962;DP=67;MQRankSum=-1.188;QUALapprox=782;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162639,67;ReadPosRankSum=0.478;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:34,30,0:64:99:782,0,957,884,1047,1931:11,23,14,16 +chrX 2772270 . G . . END=2772966 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,110,1406 +chrX 2772967 . G C, 1096.64 . AS_QUALapprox=|1104|0;AS_VarDP=27|40|0;BaseQRankSum=-0.699;DP=69;MQRankSum=-2.263;QUALapprox=1104;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237354,69;ReadPosRankSum=0.972;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:27,40,0:67:99:1104,0,717,1185,837,2022:10,17,19,21 +chrX 2772968 . T . . END=2773047 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,114,1710 +chrX 2773048 . G A, 766.64 . AS_QUALapprox=|774|0;AS_VarDP=17|26|0;BaseQRankSum=2.591;DP=46;MQRankSum=-1.123;QUALapprox=774;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162723,46;ReadPosRankSum=-0.472;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:17,26,0:43:99:774,0,422,825,500,1325:11,6,20,6 +chrX 2773049 . A . . END=2773086 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,108,1189 +chrX 2773087 . T . . END=2773087 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,933 +chrX 2773088 . G . . END=2773156 GT:DP:GQ:MIN_DP:PL 0/0:46:81:46:0,81,952 +chrX 2773157 . C CAGGG, 725.60 . AS_QUALapprox=|733|0;AS_VarDP=16|19|0;BaseQRankSum=-1.375;DP=45;MQRankSum=0.000;QUALapprox=733;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=0.133;VarDP=35 GT:AD:DP:GQ:PL:SB 0/1:16,19,0:35:99:733,0,594,781,651,1433:9,7,9,10 +chrX 2773158 . A . . END=2773294 GT:DP:GQ:MIN_DP:PL 0/0:39:33:34:0,33,772 +chrX 2773295 . T . . END=2773295 GT:DP:GQ:MIN_DP:PL 0/0:32:17:32:0,17,743 +chrX 2773296 . G . . END=2773415 GT:DP:GQ:MIN_DP:PL 0/0:38:52:38:0,52,864 +chrX 2773416 . T . . END=2773416 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,690 +chrX 2773417 . T . . END=2773443 GT:DP:GQ:MIN_DP:PL 0/0:32:43:32:0,43,827 +chrX 2773444 . T . . END=2773444 GT:DP:GQ:MIN_DP:PL 0/0:28:9:28:0,9,603 +chrX 2773445 . G . . END=2773496 GT:DP:GQ:MIN_DP:PL 0/0:36:70:36:0,70,944 +chrX 2773497 . A . . END=2773497 GT:DP:GQ:MIN_DP:PL 0/0:34:10:34:0,10,916 +chrX 2773498 . G . . END=2773552 GT:DP:GQ:MIN_DP:PL 0/0:23:38:21:0,38,600 +chrX 2773553 . A G, 296.64 . AS_QUALapprox=|304|0;AS_VarDP=11|9|0;BaseQRankSum=-0.465;DP=22;MQRankSum=0.917;QUALapprox=304;RAW_GT_COUNT=0,1,0;RAW_MQandDP=56484,22;ReadPosRankSum=-0.836;VarDP=20 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:11,9,0:20:99:0|1:2773553_A_G:304,0,349,337,376,712:2773553:8,3,6,3 +chrX 2773554 . G . . END=2773568 GT:DP:GQ:MIN_DP:PL 0/0:20:45:20:0,45,515 +chrX 2773569 . A G, 237.64 . AS_QUALapprox=|245|0;AS_VarDP=16|7|0;BaseQRankSum=0.455;DP=25;MQRankSum=-0.142;QUALapprox=245;RAW_GT_COUNT=0,1,0;RAW_MQandDP=65284,25;ReadPosRankSum=0.167;VarDP=23 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:16,7,0:23:99:0|1:2773553_A_G:245,0,414,289,435,725:2773553:11,5,5,2 +chrX 2773570 . G . . END=2773583 GT:DP:GQ:MIN_DP:PL 0/0:15:27:13:0,27,405 +chrX 2773584 . A . . END=2773585 GT:DP:GQ:MIN_DP:PL 0/0:11:4:11:0,4,264 +chrX 2773586 . G . . END=2773597 GT:DP:GQ:MIN_DP:PL 0/0:11:24:11:0,24,360 +chrX 2773598 . A . . END=2773688 GT:DP:GQ:MIN_DP:PL 0/0:5:0:5:0,0,0 +chrX 2773689 . A . . END=2773693 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,202 +chrX 2773694 . A . . END=2773694 GT:DP:GQ:MIN_DP:PL 0/0:7:7:7:0,7,194 +chrX 2773695 . G . . END=2773711 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,182 +chrX 2773712 . A . . END=2773712 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,188 +chrX 2773713 . A . . END=2773725 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,227 +chrX 2773726 . A . . END=2773726 GT:DP:GQ:MIN_DP:PL 0/0:10:16:10:0,16,289 +chrX 2773727 . G . . END=2773757 GT:DP:GQ:MIN_DP:PL 0/0:13:30:12:0,30,338 +chrX 2773758 . C . . END=2773758 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,238 +chrX 2773759 . G . . END=2773760 GT:DP:GQ:MIN_DP:PL 0/0:16:48:16:0,48,506 +chrX 2773761 . A . . END=2773761 GT:DP:GQ:MIN_DP:PL 0/0:17:0:17:0,0,313 +chrX 2773762 . G . . END=2773773 GT:DP:GQ:MIN_DP:PL 0/0:20:51:20:0,51,581 +chrX 2773774 . C . . END=2773774 GT:DP:GQ:MIN_DP:PL 0/0:23:0:23:0,0,154 +chrX 2773775 . G . . END=2774017 GT:DP:GQ:MIN_DP:PL 0/0:26:39:25:0,39,755 +chrX 2774018 . A ACC, 1049.60 . AS_QUALapprox=|1057|0;AS_VarDP=22|28|0;BaseQRankSum=-1.520;DP=52;MQRankSum=0.000;QUALapprox=1057;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=-0.538;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:22,28,0:50:99:1057,0,820,1123,905,2027:12,10,13,15 +chrX 2774019 . C . . END=2774421 GT:DP:GQ:MIN_DP:PL 0/0:54:83:54:0,83,1320 +chrX 2774422 . C CCCTGTG, 2813.03 . AS_QUALapprox=|2827|0;AS_VarDP=0|63|0;DP=67;QUALapprox=2827;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=63 GT:AD:DP:GQ:PL:SB 1/1:0,63,0:63:99:2827,189,0,2827,190,2828:0,0,36,27 +chrX 2774423 . C . . END=2774428 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 2774429 . G . . END=2774431 GT:DP:GQ:MIN_DP:PL 0/0:68:0:68:0,0,1622 +chrX 2774432 . G . . END=2774432 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 2774433 . C . . END=2774433 GT:DP:GQ:MIN_DP:PL 0/0:68:6:68:0,6,1786 +chrX 2774434 . T . . END=2774555 GT:DP:GQ:MIN_DP:PL 0/0:66:29:62:0,29,1800 +chrX 2774556 . T C, 1930.06 . AS_QUALapprox=|1944|0;AS_VarDP=1|59|0;BaseQRankSum=-0.343;DP=62;MQRankSum=0.000;QUALapprox=1944;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;ReadPosRankSum=0.983;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:1,59,0:60:99:1944,146,0,1947,177,1979:0,1,25,34 +chrX 2774557 . C . . END=2775133 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,104,1569 +chrX 2775134 . A C, 1735.06 . AS_QUALapprox=|1749|0;AS_VarDP=1|56|0;BaseQRankSum=-0.500;DP=60;MQRankSum=0.000;QUALapprox=1749;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;ReadPosRankSum=-0.487;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:1,56,0:57:99:1749,136,0,1752,167,1784:0,1,27,29 +chrX 2775135 . A . . END=2775582 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,103,1617 +chrX 2775583 . G A, 1787.06 . AS_QUALapprox=|1801|0;AS_VarDP=2|56|0;BaseQRankSum=2.732;DP=60;MQRankSum=0.000;QUALapprox=1801;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;ReadPosRankSum=-0.730;VarDP=58 GT:AD:DP:GQ:PL:SB 1/1:2,56,0:58:99:1801,153,0,1806,167,1820:0,2,22,34 +chrX 2775584 . T . . END=2775954 GT:DP:GQ:MIN_DP:PL 0/0:57:44:57:0,44,1007 +chrX 2775955 . C . . END=2775955 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,993 +chrX 2775956 . A . . END=2779020 GT:DP:GQ:MIN_DP:PL 0/0:60:62:60:0,62,1220 +chrX 2779021 . C T, 761.64 . AS_QUALapprox=|769|0;AS_VarDP=36|29|0;BaseQRankSum=1.624;DP=67;MQRankSum=0.000;QUALapprox=769;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=-0.026;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:36,29,0:65:99:769,0,931,876,1018,1894:14,22,13,16 +chrX 2779022 . C . . END=2780423 GT:DP:GQ:MIN_DP:PL 0/0:48:21:38:0,21,739 +chrX 2780424 . C . . END=2780424 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,968 +chrX 2780425 . T . . END=2781204 GT:DP:GQ:MIN_DP:PL 0/0:55:45:55:0,45,1161 +chrX 2781205 . C A, 417.64 . AS_QUALapprox=|425|0;AS_VarDP=25|17|0;BaseQRankSum=-1.374;DP=43;MQRankSum=0.000;QUALapprox=425;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154800,43;ReadPosRankSum=-1.013;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:25,17,0:42:99:425,0,722,500,773,1273:12,13,7,10 +chrX 2781206 . G . . END=2781513 GT:DP:GQ:MIN_DP:PL 0/0:46:88:46:0,88,1270 +chrX 2781514 . C A, 393.64 . AS_QUALapprox=|401|0;AS_VarDP=21|16|0;BaseQRankSum=0.022;DP=37;MQRankSum=0.000;QUALapprox=401;RAW_GT_COUNT=0,1,0;RAW_MQandDP=133200,37;ReadPosRankSum=0.475;VarDP=37 GT:AD:DP:GQ:PL:SB 0/1:21,16,0:37:99:401,0,564,463,612,1075:9,12,12,4 +chrX 2781515 . T . . END=2781603 GT:DP:GQ:MIN_DP:PL 0/0:40:77:40:0,77,1223 +chrX 2781604 . G T, 646.64 . AS_QUALapprox=|654|0;AS_VarDP=22|25|0;BaseQRankSum=-0.209;DP=47;MQRankSum=0.000;QUALapprox=654;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=0.427;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:22,25,0:47:99:654,0,539,719,614,1333:15,7,15,10 +chrX 2781605 . T . . END=2782115 GT:DP:GQ:MIN_DP:PL 0/0:58:70:58:0,70,1430 +chrX 2782116 . G A, 872.64 . AS_QUALapprox=|880|0;AS_VarDP=33|34|0;BaseQRankSum=-1.061;DP=71;MQRankSum=0.000;QUALapprox=880;RAW_GT_COUNT=0,1,0;RAW_MQandDP=253764,71;ReadPosRankSum=0.502;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:33,34,0:67:99:880,0,885,1053,1051,2419:17,16,17,17 +chrX 2782117 . A . . END=2782160 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 2782161 . A G, 801.64 . AS_QUALapprox=|809|0;AS_VarDP=29|31|0;BaseQRankSum=0.453;DP=64;MQRankSum=0.000;QUALapprox=809;RAW_GT_COUNT=0,1,0;RAW_MQandDP=228564,64;ReadPosRankSum=-0.984;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:29,31,0:60:99:809,0,729,895,821,1716:13,16,15,16 +chrX 2782162 . T . . END=2782566 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,113,1668 +chrX 2782567 . C T, 851.64 . AS_QUALapprox=|859|0;AS_VarDP=25|30|0;BaseQRankSum=2.504;DP=56;MQRankSum=0.000;QUALapprox=859;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=0.465;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:25,30,0:55:99:859,0,564,933,655,1587:15,10,15,15 +chrX 2782568 . G . . END=2783031 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 2783032 . T C, 844.64 . AS_QUALapprox=|852|0;AS_VarDP=26|31|0;BaseQRankSum=-0.127;DP=59;MQRankSum=0.000;QUALapprox=852;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-0.689;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:26,31,0:57:99:852,0,686,930,778,1708:15,11,15,16 +chrX 2783033 . T . . END=2783143 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 2783144 . C T, 954.64 . AS_QUALapprox=|962|0;AS_VarDP=30|35|0;BaseQRankSum=-0.220;DP=68;MQRankSum=0.000;QUALapprox=962;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=1.797;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:30,35,0:65:99:962,0,762,1051,867,1918:19,11,16,19 +chrX 2783145 . T . . END=2783348 GT:DP:GQ:MIN_DP:PL 0/0:55:79:55:0,79,1107 +chrX 2783349 . T . . END=2783349 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,703 +chrX 2783350 . G . . END=2785349 GT:DP:GQ:MIN_DP:PL 0/0:38:21:26:0,21,426 +chrX 2785350 . T C, 780.64 . AS_QUALapprox=|788|0;AS_VarDP=38|30|0;BaseQRankSum=0.462;DP=69;MQRankSum=0.000;QUALapprox=788;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=0.309;VarDP=68 GT:AD:DP:GQ:PL:SB 0/1:38,30,0:68:99:788,0,1036,902,1127,2029:17,21,10,20 +chrX 2785351 . G . . END=2785458 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 2785459 . A AT, 496.60 . AS_QUALapprox=|504|0;AS_VarDP=33|22|0;BaseQRankSum=0.414;DP=60;MQRankSum=0.000;QUALapprox=504;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=0.447;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:33,22,0:55:99:504,0,1257,604,1323,1927:17,16,11,11 +chrX 2785460 . A T,ATT, 705.64 . AS_QUALapprox=|713|68|0;AS_VarDP=30|22|0|0;BaseQRankSum=0.202;DP=60;MQRankSum=0.000;QUALapprox=713;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=-0.167;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:30,22,0,0:52:99:713,0,1254,645,1168,1719,743,1255,1789,1927:17,13,11,11 +chrX 2785461 . T . . END=2785502 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 2785503 . A G, 567.64 . AS_QUALapprox=|575|0;AS_VarDP=33|25|0;BaseQRankSum=-0.786;DP=59;MQRankSum=0.000;QUALapprox=575;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=0.966;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:33,25,0:58:99:575,0,868,674,942,1616:16,17,13,12 +chrX 2785504 . T . . END=2785591 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 2785592 . A G, 508.64 . AS_QUALapprox=|516|0;AS_VarDP=41|22|0;BaseQRankSum=-0.274;DP=66;MQRankSum=0.000;QUALapprox=516;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=-0.743;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:41,22,0:63:99:516,0,1187,639,1252,1891:19,22,11,11 +chrX 2785593 . T . . END=2786252 GT:DP:GQ:MIN_DP:PL 0/0:45:44:45:0,44,1035 +chrX 2786253 . A . . END=2786253 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,1032 +chrX 2786254 . T . . END=2786254 GT:DP:GQ:MIN_DP:PL 0/0:34:81:34:0,81,1215 +chrX 2786255 . G . . END=2786255 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,968 +chrX 2786256 . T . . END=2786257 GT:DP:GQ:MIN_DP:PL 0/0:43:87:43:0,87,1305 +chrX 2786258 . G . . END=2786258 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,1002 +chrX 2786259 . T . . END=2786259 GT:DP:GQ:MIN_DP:PL 0/0:40:81:40:0,81,1215 +chrX 2786260 . C CTTTTTTTTTT, 552.60 . AS_QUALapprox=|560|0;AS_VarDP=13|15|0;BaseQRankSum=-0.605;DP=39;MQRankSum=-2.207;QUALapprox=560;RAW_GT_COUNT=0,1,0;RAW_MQandDP=128604,39;ReadPosRankSum=-0.531;VarDP=28 GT:AD:DP:GQ:PL:SB 0/1:13,15,0:28:99:560,0,455,600,500,1100:9,4,9,6 +chrX 2786261 . T . . END=2786293 GT:DP:GQ:MIN_DP:PL 0/0:30:28:29:0,28,799 +chrX 2786294 . G C, 290.64 . AS_QUALapprox=|298|0;AS_VarDP=21|12|0;BaseQRankSum=0.553;DP=35;MQRankSum=-1.855;QUALapprox=298;RAW_GT_COUNT=0,1,0;RAW_MQandDP=122050,35;ReadPosRankSum=-0.112;VarDP=33 GT:AD:DP:GQ:PL:SB 0/1:21,12,0:33:99:298,0,566,361,602,963:13,8,6,6 +chrX 2786295 . T . . END=2786427 GT:DP:GQ:MIN_DP:PL 0/0:46:93:46:0,93,1120 +chrX 2786428 . T C, 500.64 . AS_QUALapprox=|508|0;AS_VarDP=21|20|0;BaseQRankSum=-2.662;DP=43;MQRankSum=0.000;QUALapprox=508;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154800,43;ReadPosRankSum=0.470;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:21,20,0:41:99:508,0,607,572,667,1238:8,13,7,13 +chrX 2786429 . G . . END=2786514 GT:DP:GQ:MIN_DP:PL 0/0:54:89:54:0,89,1414 +chrX 2786515 . A G, 772.64 . AS_QUALapprox=|780|0;AS_VarDP=26|30|0;BaseQRankSum=0.344;DP=59;MQRankSum=-1.621;QUALapprox=780;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208985,59;ReadPosRankSum=0.624;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:26,30,0:56:99:780,0,641,858,731,1588:12,14,19,11 +chrX 2786516 . C . . END=2786567 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 2786568 . T C, 934.64 . AS_QUALapprox=|942|0;AS_VarDP=26|34|0;BaseQRankSum=2.377;DP=61;MQRankSum=-1.223;QUALapprox=942;RAW_GT_COUNT=0,1,0;RAW_MQandDP=218264,61;ReadPosRankSum=-1.276;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:26,34,0:60:99:942,0,602,1020,704,1724:14,12,24,10 +chrX 2786569 . C . . END=2786766 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 2786767 . T C, 852.64 . AS_QUALapprox=|860|0;AS_VarDP=26|33|0;BaseQRankSum=0.472;DP=61;MQRankSum=0.000;QUALapprox=860;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=0.130;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:26,33,0:59:99:860,0,632,938,731,1668:14,12,11,22 +chrX 2786768 . A . . END=2786947 GT:DP:GQ:MIN_DP:PL 0/0:57:76:57:0,76,1420 +chrX 2786948 . T C, 617.64 . AS_QUALapprox=|625|0;AS_VarDP=18|25|0;BaseQRankSum=-3.001;DP=44;MQRankSum=0.000;QUALapprox=625;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=0.715;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:18,25,0:43:99:625,0,496,679,571,1249:9,9,9,16 +chrX 2786949 . G . . END=2787422 GT:DP:GQ:MIN_DP:PL 0/0:49:20:40:0,20,1052 +chrX 2787423 . T A, 944.64 . AS_QUALapprox=|952|0;AS_VarDP=32|36|0;BaseQRankSum=-0.315;DP=70;MQRankSum=0.000;QUALapprox=952;RAW_GT_COUNT=0,1,0;RAW_MQandDP=252000,70;ReadPosRankSum=-2.034;VarDP=68 GT:AD:DP:GQ:PL:SB 0/1:32,36,0:68:99:952,0,831,1048,939,1987:17,15,20,16 +chrX 2787424 . T . . END=2787905 GT:DP:GQ:MIN_DP:PL 0/0:60:45:60:0,45,1245 +chrX 2787906 . T . . END=2787907 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,1107 +chrX 2787908 . A . . END=2788854 GT:DP:GQ:MIN_DP:PL 0/0:58:81:58:0,81,1108 +chrX 2788855 . T TA, 598.60 . AS_QUALapprox=|606|0;AS_VarDP=24|27|0;BaseQRankSum=0.928;DP=54;MQRankSum=0.000;QUALapprox=606;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=0.510;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:24,27,0:51:99:606,0,518,678,599,1277:13,11,12,15 +chrX 2788856 . A . . END=2789018 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,102,1495 +chrX 2789019 . A G, 515.64 . AS_QUALapprox=|523|0;AS_VarDP=29|20|0;BaseQRankSum=0.245;DP=49;MQRankSum=0.872;QUALapprox=523;RAW_GT_COUNT=0,1,0;RAW_MQandDP=175716,49;ReadPosRankSum=-0.346;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:29,20,0:49:99:523,0,841,610,901,1511:16,13,10,10 +chrX 2789020 . C . . END=2789100 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 2789101 . T C, 646.64 . AS_QUALapprox=|654|0;AS_VarDP=31|27|0;BaseQRankSum=-1.357;DP=59;MQRankSum=0.000;QUALapprox=654;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=0.639;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:31,27,0:58:99:654,0,817,747,898,1645:16,15,13,14 +chrX 2789102 . G . . END=2789684 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,109,1768 +chrX 2789685 . G . . END=2789685 GT:DP:GQ:MIN_DP:PL 0/0:74:15:74:0,15,1916 +chrX 2789686 . G . . END=2789936 GT:DP:GQ:MIN_DP:PL 0/0:67:49:67:0,49,1161 +chrX 2789937 . T C, 490.64 . AS_QUALapprox=|498|0;AS_VarDP=20|19|0;BaseQRankSum=-0.557;DP=42;MQRankSum=0.000;QUALapprox=498;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151200,42;ReadPosRankSum=-0.506;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:20,19,0:39:99:498,0,558,559,615,1174:9,11,16,3 +chrX 2789938 . G . . END=2790504 GT:DP:GQ:MIN_DP:PL 0/0:55:71:55:0,71,1231 +chrX 2790505 . G GA, 223.60 . AS_QUALapprox=|231|0;AS_VarDP=18|15|0;BaseQRankSum=-0.227;DP=46;MQRankSum=-1.035;QUALapprox=231;RAW_GT_COUNT=0,1,0;RAW_MQandDP=164916,46;ReadPosRankSum=0.452;VarDP=33 GT:AD:DP:GQ:PL:SB 0/1:18,15,0:33:99:231,0,305,285,349,634:8,10,8,7 +chrX 2790506 . A . . END=2790966 GT:DP:GQ:MIN_DP:PL 0/0:57:53:57:0,53,1265 +chrX 2790967 . ATAAATT A, 1102.60 . AS_QUALapprox=|1110|0;AS_VarDP=36|29|0;BaseQRankSum=-0.829;DP=70;MQRankSum=0.000;QUALapprox=1110;RAW_GT_COUNT=0,1,0;RAW_MQandDP=252000,70;ReadPosRankSum=-0.910;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:36,29,0:65:99:1110,0,1411,1218,1499,2717:20,16,15,14 +chrX 2790974 . T . . END=2791005 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 2791006 . C T, 1062.64 . AS_QUALapprox=|1070|0;AS_VarDP=32|38|0;BaseQRankSum=0.267;DP=71;MQRankSum=0.000;QUALapprox=1070;RAW_GT_COUNT=0,1,0;RAW_MQandDP=255600,71;ReadPosRankSum=-0.448;VarDP=70 GT:AD:DP:GQ:PL:SB 0/1:32,38,0:70:99:1070,0,862,1166,976,2142:19,13,23,15 +chrX 2791007 . C . . END=2792464 GT:DP:GQ:MIN_DP:PL 0/0:59:93:59:0,93,1286 +chrX 2792465 . G C, 696.64 . AS_QUALapprox=|704|0;AS_VarDP=27|25|0;BaseQRankSum=2.219;DP=54;MQRankSum=0.000;QUALapprox=704;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=0.889;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:27,25,0:52:99:704,0,668,784,743,1527:11,16,10,15 +chrX 2792466 . C . . END=2792544 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,119,1467 +chrX 2792545 . T TTGTG, 842.60 . AS_QUALapprox=|850|0;AS_VarDP=25|23|0;BaseQRankSum=-0.148;DP=62;MQRankSum=0.000;QUALapprox=850;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=-1.735;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:25,23,0:48:99:850,0,936,926,1005,1931:17,8,14,9 +chrX 2792546 . T . . END=2792798 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,118,1636 +chrX 2792799 . C T, 828.64 . AS_QUALapprox=|836|0;AS_VarDP=33|31|0;BaseQRankSum=2.098;DP=71;MQRankSum=0.000;QUALapprox=836;RAW_GT_COUNT=0,1,0;RAW_MQandDP=255600,71;ReadPosRankSum=0.786;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:33,31,0:64:99:836,0,810,934,903,1837:10,23,12,19 +chrX 2792800 . G . . END=2792953 GT:DP:GQ:MIN_DP:PL 0/0:61:81:61:0,81,1623 +chrX 2792954 . C T, 691.64 . AS_QUALapprox=|699|0;AS_VarDP=26|26|0;BaseQRankSum=1.686;DP=54;MQRankSum=0.000;QUALapprox=699;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=-0.705;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:26,26,0:52:99:699,0,603,776,681,1457:14,12,13,13 +chrX 2792955 . T . . END=2793387 GT:DP:GQ:MIN_DP:PL 0/0:50:84:50:0,84,1434 +chrX 2793388 . G A, 859.64 . AS_QUALapprox=|867|0;AS_VarDP=19|31|0;BaseQRankSum=-2.006;DP=50;MQRankSum=0.000;QUALapprox=867;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=0.680;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:19,31,0:50:99:867,0,510,924,603,1528:7,12,14,17 +chrX 2793389 . T . . END=2793680 GT:DP:GQ:MIN_DP:PL 0/0:48:97:48:0,97,1371 +chrX 2793681 . C T, 586.64 . AS_QUALapprox=|594|0;AS_VarDP=21|21|0;BaseQRankSum=1.435;DP=44;MQRankSum=0.000;QUALapprox=594;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=1.422;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:21,21,0:42:99:594,0,563,657,627,1283:13,8,12,9 +chrX 2793682 . G . . END=2794241 GT:DP:GQ:MIN_DP:PL 0/0:40:38:34:0,38,814 +chrX 2794242 . C T, 746.64 . AS_QUALapprox=|754|0;AS_VarDP=24|29|0;BaseQRankSum=-0.268;DP=54;MQRankSum=0.000;QUALapprox=754;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=1.055;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:24,29,0:53:99:754,0,615,826,702,1528:16,8,14,15 +chrX 2794243 . T . . END=2794970 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,116,1662 +chrX 2794971 . T C, 1088.64 . AS_QUALapprox=|1096|0;AS_VarDP=30|40|0;BaseQRankSum=-1.528;DP=72;MQRankSum=0.000;QUALapprox=1096;RAW_GT_COUNT=0,1,0;RAW_MQandDP=259200,72;ReadPosRankSum=0.772;VarDP=70 GT:AD:DP:GQ:PL:SB 0/1:30,40,0:70:99:1096,0,806,1186,926,2112:19,11,22,18 +chrX 2794972 . A . . END=2795027 GT:DP:GQ:MIN_DP:PL 0/0:74:99:74:0,120,1800 +chrX 2795028 . G A, 1749.64 . AS_QUALapprox=|1757|0;AS_VarDP=30|45|0;BaseQRankSum=-2.891;DP=76;MQRankSum=0.000;QUALapprox=1757;RAW_GT_COUNT=0,1,0;RAW_MQandDP=273600,76;ReadPosRankSum=-0.617;VarDP=75 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:30,45,0:75:99:0|1:2795028_G_A:1757,0,1113,1847,1249,3096:2795028:19,11,23,22 +chrX 2795029 . C . . END=2795031 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 2795032 . C T, 1777.64 . AS_QUALapprox=|1785|0;AS_VarDP=31|46|0;BaseQRankSum=-1.224;DP=77;MQRankSum=0.000;QUALapprox=1785;RAW_GT_COUNT=0,1,0;RAW_MQandDP=277200,77;ReadPosRankSum=-1.207;VarDP=77 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:31,46,0:77:99:0|1:2795028_G_A:1785,0,1153,1878,1291,3170:2795028:18,13,25,21 +chrX 2795033 . T . . END=2795047 GT:DP:GQ:MIN_DP:PL 0/0:76:99:76:0,120,1800 +chrX 2795048 . A G, 1705.64 . AS_QUALapprox=|1713|0;AS_VarDP=34|44|0;BaseQRankSum=-2.244;DP=78;MQRankSum=0.000;QUALapprox=1713;RAW_GT_COUNT=0,1,0;RAW_MQandDP=280800,78;ReadPosRankSum=0.479;VarDP=78 GT:AD:DP:GQ:PL:SB 0/1:34,44,0:78:99:1713,0,917,1816,1049,2865:21,13,25,19 +chrX 2795049 . T . . END=2795169 GT:DP:GQ:MIN_DP:PL 0/0:74:99:74:0,120,1800 +chrX 2795170 . G T, 776.64 . AS_QUALapprox=|784|0;AS_VarDP=45|29|0;BaseQRankSum=2.856;DP=76;MQRankSum=0.000;QUALapprox=784;RAW_GT_COUNT=0,1,0;RAW_MQandDP=273600,76;ReadPosRankSum=-0.914;VarDP=74 GT:AD:DP:GQ:PL:SB 0/1:45,29,0:74:99:784,0,1092,917,1179,2096:21,24,15,14 +chrX 2795171 . T . . END=2795239 GT:DP:GQ:MIN_DP:PL 0/0:74:99:74:0,120,1800 +chrX 2795240 . G GTATT, 1130.60 . AS_QUALapprox=|1138|0;AS_VarDP=35|30|0;BaseQRankSum=0.491;DP=68;MQRankSum=-1.517;QUALapprox=1138;RAW_GT_COUNT=0,1,0;RAW_MQandDP=242564,68;ReadPosRankSum=0.737;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:35,30,0:65:99:1138,0,1379,1244,1470,2714:11,24,12,18 +chrX 2795241 . T . . END=2795656 GT:DP:GQ:MIN_DP:PL 0/0:61:91:61:0,91,1474 +chrX 2795657 . G T, 792.64 . AS_QUALapprox=|800|0;AS_VarDP=26|28|0;BaseQRankSum=-0.927;DP=56;MQRankSum=-0.927;QUALapprox=800;RAW_GT_COUNT=0,1,0;RAW_MQandDP=199600,56;ReadPosRankSum=1.325;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:26,28,0:54:99:800,0,736,878,821,1699:11,15,15,13 +chrX 2795658 . T . . END=2795721 GT:DP:GQ:MIN_DP:PL 0/0:51:98:51:0,98,1410 +chrX 2795722 . A G, 663.64 . AS_QUALapprox=|671|0;AS_VarDP=26|28|0;BaseQRankSum=-1.685;DP=56;MQRankSum=0.000;QUALapprox=671;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=0.113;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:26,28,0:54:99:671,0,692,749,776,1525:12,14,14,14 +chrX 2795723 . A . . END=2795765 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 2795766 . T C, 766.64 . AS_QUALapprox=|774|0;AS_VarDP=28|30|0;BaseQRankSum=-0.753;DP=58;MQRankSum=0.000;QUALapprox=774;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=0.249;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:28,30,0:58:99:774,0,770,858,859,1717:16,12,14,16 +chrX 2795767 . T . . END=2796235 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 2796236 . C T, 889.64 . AS_QUALapprox=|897|0;AS_VarDP=28|33|0;BaseQRankSum=1.477;DP=65;MQRankSum=0.000;QUALapprox=897;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=-0.167;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:28,33,0:61:99:897,0,700,981,799,1780:14,14,11,22 +chrX 2796237 . A . . END=2796467 GT:DP:GQ:MIN_DP:PL 0/0:60:78:60:0,78,1528 +chrX 2796468 . A ATGTGTG,ATGTGTGTG, 841.60 . AS_QUALapprox=|849|136|0;AS_VarDP=33|19|0|0;BaseQRankSum=0.524;DP=68;MQRankSum=0.000;QUALapprox=849;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=0.608;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:33,19,0,0:52:99:849,0,1339,713,1367,2038,845,1395,2079,2199:18,15,9,10 +chrX 2796469 . T . . END=2796489 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 2796490 . A G, 606.64 . AS_QUALapprox=|614|0;AS_VarDP=38|21|0;BaseQRankSum=0.429;DP=66;MQRankSum=0.000;QUALapprox=614;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=0.254;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:38,21,0:59:99:614,0,1458,738,1469,2251:21,17,9,10 +chrX 2796491 . T . . END=2797383 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,102,1340 +chrX 2797384 . A G, 852.64 . AS_QUALapprox=|860|0;AS_VarDP=17|30|0;BaseQRankSum=-0.767;DP=47;MQRankSum=0.000;QUALapprox=860;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=-0.277;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:17,30,0:47:99:860,0,438,911,529,1440:7,10,16,14 +chrX 2797385 . T . . END=2798368 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,100,1569 +chrX 2798369 . C . . END=2798369 GT:DP:GQ:MIN_DP:PL 0/0:65:0:65:0,0,1062 +chrX 2798370 . T . . END=2798389 GT:DP:GQ:MIN_DP:PL 0/0:74:99:74:0,120,1800 +chrX 2798390 . G . . END=2798390 GT:DP:GQ:MIN_DP:PL 0/0:54:0:54:0,0,831 +chrX 2798391 . A . . END=2798402 GT:DP:GQ:MIN_DP:PL 0/0:56:33:54:0,33,1216 +chrX 2798403 . A . . END=2798403 GT:DP:GQ:MIN_DP:PL 0/0:55:17:55:0,17,1354 +chrX 2798404 . C . . END=2798406 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,108,1474 +chrX 2798407 . G . . END=2798407 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,1084 +chrX 2798408 . T . . END=2798409 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 2798410 . G . . END=2798410 GT:DP:GQ:MIN_DP:PL 0/0:47:13:47:0,13,1167 +chrX 2798411 . C . . END=2798991 GT:DP:GQ:MIN_DP:PL 0/0:62:46:62:0,46,1136 +chrX 2798992 . A G, 653.64 . AS_QUALapprox=|661|0;AS_VarDP=36|26|0;BaseQRankSum=0.078;DP=67;MQRankSum=0.000;QUALapprox=661;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=-0.635;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:36,26,0:62:99:661,0,1005,769,1083,1852:15,21,8,18 +chrX 2798993 . G . . END=2799025 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 2799026 . T C, 713.64 . AS_QUALapprox=|721|0;AS_VarDP=36|28|0;BaseQRankSum=-0.800;DP=65;MQRankSum=0.000;QUALapprox=721;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=0.697;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:36,28,0:64:99:721,0,1038,830,1121,1951:15,21,12,16 +chrX 2799027 . A . . END=2799192 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 2799193 . C T, 1236.64 . AS_QUALapprox=|1244|0;AS_VarDP=27|43|0;BaseQRankSum=-0.821;DP=76;MQRankSum=0.000;QUALapprox=1244;RAW_GT_COUNT=0,1,0;RAW_MQandDP=273600,76;ReadPosRankSum=2.124;VarDP=70 GT:AD:DP:GQ:PL:SB 0/1:27,43,0:70:99:1244,0,708,1325,837,2163:20,7,28,15 +chrX 2799194 . A . . END=2799496 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,120,1800 +chrX 2799497 . A C, 704.64 . AS_QUALapprox=|712|0;AS_VarDP=37|30|0;BaseQRankSum=-1.709;DP=68;MQRankSum=0.000;QUALapprox=712;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=-0.523;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:37,30,0:67:99:712,0,1026,823,1115,1938:18,19,13,17 +chrX 2799498 . C . . END=2800093 GT:DP:GQ:MIN_DP:PL 0/0:58:96:58:0,96,1440 +chrX 2800094 . T C, 1340.06 . AS_QUALapprox=|1354|0;AS_VarDP=0|40|0;DP=40;QUALapprox=1354;RAW_GT_COUNT=0,0,1;RAW_MQandDP=144000,40;VarDP=40 GT:AD:DP:GQ:PL:SB 1/1:0,40,0:40:99:1354,120,0,1354,120,1354:0,0,21,19 +chrX 2800095 . T . . END=2800973 GT:DP:GQ:MIN_DP:PL 0/0:43:36:33:0,36,929 +chrX 2800974 . T . . END=2800974 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,600 +chrX 2800975 . C CA, 128.60 . AS_QUALapprox=|136|0;AS_VarDP=9|12|0;BaseQRankSum=0.319;DP=41;MQRankSum=0.000;QUALapprox=136;RAW_GT_COUNT=0,1,0;RAW_MQandDP=145600,41;ReadPosRankSum=-1.967;VarDP=21 GT:AD:DP:GQ:PL:SB 0/1:9,12,0:21:99:136,0,107,162,141,302:5,4,2,10 +chrX 2800976 . A . . END=2801069 GT:DP:GQ:MIN_DP:PL 0/0:45:55:45:0,55,1252 +chrX 2801070 . G T, 656.64 . AS_QUALapprox=|664|0;AS_VarDP=21|24|0;BaseQRankSum=0.584;DP=48;MQRankSum=0.000;QUALapprox=664;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=1.423;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:21,24,0:45:99:664,0,564,727,636,1363:12,9,15,9 +chrX 2801071 . A . . END=2801200 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 2801201 . CTG C, 1186.60 . AS_QUALapprox=|1194|0;AS_VarDP=29|31|0;BaseQRankSum=-0.961;DP=62;MQRankSum=0.000;QUALapprox=1194;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=-0.733;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:29,31,0:60:99:1194,0,1093,1281,1187,2468:14,15,18,13 +chrX 2801204 . G . . END=2801256 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 2801257 . A G, 639.64 . AS_QUALapprox=|647|0;AS_VarDP=26|26|0;BaseQRankSum=-1.179;DP=54;MQRankSum=0.000;QUALapprox=647;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=1.574;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:26,26,0:52:99:647,0,687,725,766,1491:10,16,12,14 +chrX 2801258 . C . . END=2801738 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,109,1488 +chrX 2801739 . C G, 788.64 . AS_QUALapprox=|796|0;AS_VarDP=26|30|0;BaseQRankSum=0.287;DP=62;MQRankSum=-0.475;QUALapprox=796;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198470,62;ReadPosRankSum=1.085;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:26,30,0:56:99:796,0,621,872,711,1584:12,14,20,10 +chrX 2801740 . G . . END=2801798 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 2801799 . C T, 953.64 . AS_QUALapprox=|961|0;AS_VarDP=25|35|0;BaseQRankSum=-1.030;DP=63;MQRankSum=0.774;QUALapprox=961;RAW_GT_COUNT=0,1,0;RAW_MQandDP=196507,63;ReadPosRankSum=-0.278;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:25,35,0:60:99:961,0,662,1037,767,1803:13,12,21,14 +chrX 2801800 . C . . END=2801917 GT:DP:GQ:MIN_DP:PL 0/0:53:96:53:0,96,1547 +chrX 2801918 . A G, 435.64 . AS_QUALapprox=|443|0;AS_VarDP=30|20|0;BaseQRankSum=-1.584;DP=52;MQRankSum=-0.986;QUALapprox=443;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183185,52;ReadPosRankSum=1.179;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:30,20,0:50:99:443,0,842,533,901,1435:15,15,6,14 +chrX 2801919 . G . . END=2801928 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 2801929 . G T, 822.64 . AS_QUALapprox=|830|0;AS_VarDP=20|31|0;BaseQRankSum=0.189;DP=52;MQRankSum=1.064;QUALapprox=830;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183185,52;ReadPosRankSum=-1.081;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:20,31,0:51:99:830,0,503,890,595,1485:6,14,16,15 +chrX 2801930 . A . . END=2802660 GT:DP:GQ:MIN_DP:PL 0/0:60:83:60:0,83,1269 +chrX 2802661 . A G, 651.64 . AS_QUALapprox=|659|0;AS_VarDP=27|27|0;BaseQRankSum=-2.225;DP=56;MQRankSum=-1.743;QUALapprox=659;RAW_GT_COUNT=0,1,0;RAW_MQandDP=197202,56;ReadPosRankSum=-0.666;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:27,27,0:54:99:659,0,747,740,827,1568:13,14,9,18 +chrX 2802662 . G . . END=2803604 GT:DP:GQ:MIN_DP:PL 0/0:60:85:60:0,85,1301 +chrX 2803605 . G T, 581.64 . AS_QUALapprox=|589|0;AS_VarDP=26|22|0;BaseQRankSum=1.705;DP=48;MQRankSum=-4.100;QUALapprox=589;RAW_GT_COUNT=0,1,0;RAW_MQandDP=116821,48;ReadPosRankSum=0.342;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:26,22,0:48:99:589,0,644,666,710,1377:11,15,8,14 +chrX 2803606 . T . . END=2803746 GT:DP:GQ:MIN_DP:PL 0/0:48:98:48:0,98,1360 +chrX 2803747 . A G, 543.64 . AS_QUALapprox=|551|0;AS_VarDP=31|22|0;BaseQRankSum=-0.567;DP=54;MQRankSum=0.000;QUALapprox=551;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=-0.226;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:31,22,0:53:99:551,0,879,644,944,1588:17,14,14,8 +chrX 2803748 . A . . END=2803936 GT:DP:GQ:MIN_DP:PL 0/0:61:95:61:0,95,1465 +chrX 2803937 . G C, 689.64 . AS_QUALapprox=|697|0;AS_VarDP=27|27|0;BaseQRankSum=0.470;DP=57;MQRankSum=-0.610;QUALapprox=697;RAW_GT_COUNT=0,1,0;RAW_MQandDP=200067,57;ReadPosRankSum=-0.675;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:27,27,0:54:99:697,0,657,777,738,1515:11,16,15,12 +chrX 2803938 . G . . END=2804014 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 2804015 . A G, 694.64 . AS_QUALapprox=|702|0;AS_VarDP=35|27|0;BaseQRankSum=-0.378;DP=64;MQRankSum=-0.183;QUALapprox=702;RAW_GT_COUNT=0,1,0;RAW_MQandDP=224811,64;ReadPosRankSum=-0.931;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:35,27,0:62:99:702,0,965,807,1047,1853:22,13,10,17 +chrX 2804016 . T . . END=2805604 GT:DP:GQ:MIN_DP:PL 0/0:52:36:43:0,36,1232 +chrX 2805605 . A . . END=2805605 GT:DP:GQ:MIN_DP:PL 0/0:48:6:48:0,6,1282 +chrX 2805606 . G . . END=2805624 GT:DP:GQ:MIN_DP:PL 0/0:50:87:50:0,87,1271 +chrX 2805625 . C T, 1310.06 . AS_QUALapprox=|1324|0;AS_VarDP=0|42|0;DP=44;QUALapprox=1324;RAW_GT_COUNT=0,0,1;RAW_MQandDP=142571,44;VarDP=42 GT:AD:DP:GQ:PL:SB 1/1:0,42,0:42:99:1324,125,0,1324,125,1324:0,0,28,14 +chrX 2805626 . A . . END=2806718 GT:DP:GQ:MIN_DP:PL 0/0:58:49:58:0,49,833 +chrX 2806719 . T C, 2106.06 . AS_QUALapprox=|2120|0;AS_VarDP=0|63|0;DP=66;QUALapprox=2120;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234529,66;VarDP=63 GT:AD:DP:GQ:PL:SB 1/1:0,63,0:63:99:2120,189,0,2120,189,2120:0,0,26,37 +chrX 2806720 . C . . END=2807132 GT:DP:GQ:MIN_DP:PL 0/0:62:83:62:0,83,1689 +chrX 2807133 . C CTG, 2366.03 . AS_QUALapprox=|2380|0;AS_VarDP=0|56|0;DP=59;QUALapprox=2380;RAW_GT_COUNT=0,0,1;RAW_MQandDP=199450,59;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:2380,168,0,2380,169,2380:0,0,29,27 +chrX 2807134 . T . . END=2807257 GT:DP:GQ:MIN_DP:PL 0/0:61:67:61:0,67,1726 +chrX 2807258 . A C, 2309.06 . AS_QUALapprox=|2323|0;AS_VarDP=0|69|0;DP=73;QUALapprox=2323;RAW_GT_COUNT=0,0,1;RAW_MQandDP=227255,73;VarDP=69 GT:AD:DP:GQ:PL:SB 1/1:0,69,0:69:99:2323,208,0,2323,208,2323:0,0,36,33 +chrX 2807259 . T . . END=2807476 GT:DP:GQ:MIN_DP:PL 0/0:73:99:73:0,120,1800 +chrX 2807477 . T C, 3370.06 . AS_QUALapprox=|3384|0;AS_VarDP=0|79|0;DP=79;QUALapprox=3384;RAW_GT_COUNT=0,0,1;RAW_MQandDP=249152,79;VarDP=79 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,79,0:79:99:0|1:2807477_T_C:3384,237,0,3384,237,3384:2807477:0,0,36,43 +chrX 2807478 . G . . END=2807501 GT:DP:GQ:MIN_DP:PL 0/0:80:99:80:0,120,1800 +chrX 2807502 . A T, 3647.06 . AS_QUALapprox=|3661|0;AS_VarDP=0|82|0;DP=82;QUALapprox=3661;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259952,82;VarDP=82 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,82,0:82:99:0|1:2807477_T_C:3661,247,0,3661,247,3661:2807477:0,0,34,48 +chrX 2807503 . A . . END=2807503 GT:DP:GQ:MIN_DP:PL 0/0:78:99:78:0,120,1800 +chrX 2807504 . ACATGTGCACACATCGGTGTGTG A, 3622.03 . AS_QUALapprox=|3636|0;AS_VarDP=0|81|0;DP=82;QUALapprox=3636;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259952,82;VarDP=81 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,81,0:81:99:0|1:2807477_T_C:3636,244,0,3636,244,3636:2807477:0,0,33,48 +chrX 2807527 . C . . END=2807618 GT:DP:GQ:MIN_DP:PL 0/0:82:71:82:0,71,1800 +chrX 2807619 . T G, 2357.06 . AS_QUALapprox=|2371|0;AS_VarDP=0|72|0;DP=73;QUALapprox=2371;RAW_GT_COUNT=0,0,1;RAW_MQandDP=233888,73;VarDP=72 GT:AD:DP:GQ:PL:SB 1/1:0,72,0:72:99:2371,216,0,2371,216,2371:0,0,32,40 +chrX 2807620 . A . . END=2807749 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 2807750 . T G, 1588.06 . AS_QUALapprox=|1602|0;AS_VarDP=0|51|0;DP=53;QUALapprox=1602;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1602,152,0,1602,152,1602:0,0,21,30 +chrX 2807751 . C . . END=2807841 GT:DP:GQ:MIN_DP:PL 0/0:50:88:50:0,88,1390 +chrX 2807842 . T C, 1430.06 . AS_QUALapprox=|1444|0;AS_VarDP=0|45|0;DP=46;QUALapprox=1444;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;VarDP=45 GT:AD:DP:GQ:PL:SB 1/1:0,45,0:45:99:1444,135,0,1444,135,1444:0,0,15,30 +chrX 2807843 . G . . END=2808354 GT:DP:GQ:MIN_DP:PL 0/0:49:91:49:0,91,1247 +chrX 2808355 . A G, 1559.06 . AS_QUALapprox=|1573|0;AS_VarDP=0|47|0;DP=50;QUALapprox=1573;RAW_GT_COUNT=0,0,1;RAW_MQandDP=179649,50;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1573,141,0,1573,141,1573:0,0,23,24 +chrX 2808356 . A . . END=2808605 GT:DP:GQ:MIN_DP:PL 0/0:49:97:49:0,97,1332 +chrX 2808606 . T G, 1629.06 . AS_QUALapprox=|1643|0;AS_VarDP=0|49|0;DP=50;QUALapprox=1643;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1643,146,0,1643,146,1643:0,0,23,26 +chrX 2808607 . C . . END=2809892 GT:DP:GQ:MIN_DP:PL 0/0:58:84:58:0,84,1506 +chrX 2809893 . T G, 1587.06 . AS_QUALapprox=|1601|0;AS_VarDP=0|53|0;DP=54;QUALapprox=1601;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1601,157,0,1601,157,1601:0,0,26,27 +chrX 2809894 . G . . END=2810179 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 2810180 . A C, 1956.06 . AS_QUALapprox=|1970|0;AS_VarDP=0|60|0;DP=63;QUALapprox=1970;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226449,63;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:1970,180,0,1970,180,1970:0,0,31,29 +chrX 2810181 . T . . END=2810927 GT:DP:GQ:MIN_DP:PL 0/0:54:87:54:0,87,1286 +chrX 2810928 . GAAAT G, 1352.03 . AS_QUALapprox=|1366|0;AS_VarDP=0|31|0;DP=45;QUALapprox=1366;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162000,45;VarDP=31 GT:AD:DP:GQ:PL:SB 1/1:0,31,0:31:94:1366,94,0,1366,94,1366:0,0,20,11 +chrX 2810933 . A . . END=2810951 GT:DP:GQ:MIN_DP:PL 0/0:46:96:46:0,96,1440 +chrX 2810952 . T . . END=2810952 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,1250 +chrX 2810953 . A . . END=2811239 GT:DP:GQ:MIN_DP:PL 0/0:55:56:55:0,56,1132 +chrX 2811240 . A G, 1066.06 . AS_QUALapprox=|1080|0;AS_VarDP=0|36|0;DP=37;QUALapprox=1080;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133200,37;VarDP=36 GT:AD:DP:GQ:PL:SB 1/1:0,36,0:36:99:1080,106,0,1080,106,1080:0,0,17,19 +chrX 2811241 . A . . END=2811498 GT:DP:GQ:MIN_DP:PL 0/0:50:74:50:0,74,1141 +chrX 2811499 . T TA, 1309.03 . AS_QUALapprox=|1323|0;AS_VarDP=1|50|0;BaseQRankSum=-0.481;DP=58;MQRankSum=0.000;QUALapprox=1323;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;ReadPosRankSum=0.068;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:1,50,0:51:99:1323,125,0,1326,150,1351:1,0,26,24 +chrX 2811500 . A . . END=2812066 GT:DP:GQ:MIN_DP:PL 0/0:59:29:56:0,29,1517 +chrX 2812067 . T . . END=2812072 GT:DP:GQ:MIN_DP:PL 0/0:60:0:60:0,0,1390 +chrX 2812073 . T . . END=2812074 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 2812075 . A . . END=2812077 GT:DP:GQ:MIN_DP:PL 0/0:59:0:59:0,0,1353 +chrX 2812078 . A AG, 2236.03 . AS_QUALapprox=|2250|0;AS_VarDP=0|50|0;DP=52;QUALapprox=2250;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,50,0:50:99:0|1:2812078_A_AG:2250,150,0,2250,151,2250:2812078:0,0,18,32 +chrX 2812079 . C CCAAATATAGTT, 2236.03 . AS_QUALapprox=|2250|0;AS_VarDP=0|50|0;DP=51;QUALapprox=2250;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,50,0:50:99:0|1:2812078_A_AG:2250,151,0,2250,151,2250:2812078:0,0,18,32 +chrX 2812080 . C . . END=2812080 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 2812081 . T . . END=2812089 GT:DP:GQ:MIN_DP:PL 0/0:58:0:58:0,0,1083 +chrX 2812090 . T . . END=2812091 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 2812092 . G . . END=2812092 GT:DP:GQ:MIN_DP:PL 0/0:59:0:59:0,0,1515 +chrX 2812093 . T . . END=2812093 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 2812094 . A . . END=2812094 GT:DP:GQ:MIN_DP:PL 0/0:60:2:60:0,2,1639 +chrX 2812095 . T . . END=2812247 GT:DP:GQ:MIN_DP:PL 0/0:51:41:51:0,41,1529 +chrX 2812248 . G A, 1525.06 . AS_QUALapprox=|1539|0;AS_VarDP=0|46|0;DP=50;QUALapprox=1539;RAW_GT_COUNT=0,0,1;RAW_MQandDP=178136,50;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1539,138,0,1539,138,1539:0,0,29,17 +chrX 2812249 . G . . END=2814054 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,103,1319 +chrX 2814055 . C T, 1758.06 . AS_QUALapprox=|1772|0;AS_VarDP=0|53|0;DP=54;QUALapprox=1772;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1772,159,0,1772,159,1772:0,0,29,24 +chrX 2814056 . T . . END=2814124 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 2814125 . A T, 1633.06 . AS_QUALapprox=|1647|0;AS_VarDP=0|49|0;DP=49;QUALapprox=1647;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1647,147,0,1647,147,1647:0,0,25,24 +chrX 2814126 . A . . END=2814314 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,106,1513 +chrX 2814315 . C CT, 1407.03 . AS_QUALapprox=|1421|0;AS_VarDP=0|51|0;DP=59;QUALapprox=1421;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1421,153,0,1421,153,1422:0,0,28,23 +chrX 2814316 . T . . END=2815067 GT:DP:GQ:MIN_DP:PL 0/0:56:81:56:0,81,1187 +chrX 2815068 . T G, 1237.06 . AS_QUALapprox=|1251|0;AS_VarDP=0|38|0;DP=39;QUALapprox=1251;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140400,39;VarDP=38 GT:AD:DP:GQ:PL:SB 1/1:0,38,0:38:99:1251,114,0,1251,114,1251:0,0,18,20 +chrX 2815069 . C . . END=2815168 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,108,1366 +chrX 2815169 . G A, 1763.06 . AS_QUALapprox=|1777|0;AS_VarDP=0|52|0;DP=54;QUALapprox=1777;RAW_GT_COUNT=0,0,1;RAW_MQandDP=189185,54;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1777,156,0,1777,156,1777:0,0,27,25 +chrX 2815170 . C . . END=2815234 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 2815235 . G A, 2084.06 . AS_QUALapprox=|2098|0;AS_VarDP=0|64|0;DP=65;QUALapprox=2098;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230785,65;VarDP=64 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:2098,192,0,2098,192,2098:0,0,41,23 +chrX 2815236 . T . . END=2815599 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 2815600 . A G, 1757.06 . AS_QUALapprox=|1771|0;AS_VarDP=1|56|0;BaseQRankSum=-0.443;DP=57;MQRankSum=-0.973;QUALapprox=1771;RAW_GT_COUNT=0,0,1;RAW_MQandDP=167109,57;ReadPosRankSum=0.639;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:1,56,0:57:99:1771,136,0,1774,167,1806:0,1,22,34 +chrX 2815601 . A . . END=2815626 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 2815627 . G A, 1956.06 . AS_QUALapprox=|1970|0;AS_VarDP=2|60|0;BaseQRankSum=1.850;DP=63;MQRankSum=-1.803;QUALapprox=1970;RAW_GT_COUNT=0,0,1;RAW_MQandDP=173527,63;ReadPosRankSum=2.192;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:2,60,0:62:99:1970,142,0,1975,180,2014:1,1,28,32 +chrX 2815628 . T . . END=2815773 GT:DP:GQ:MIN_DP:PL 0/0:59:40:59:0,40,1379 +chrX 2815774 . C . . END=2815774 GT:DP:GQ:MIN_DP:PL 0/0:47:2:47:0,2,1265 +chrX 2815775 . T . . END=2815781 GT:DP:GQ:MIN_DP:PL 0/0:49:25:48:0,25,1289 +chrX 2815782 . A . . END=2815782 GT:DP:GQ:MIN_DP:PL 0/0:50:7:50:0,7,1381 +chrX 2815783 . A . . END=2815783 GT:DP:GQ:MIN_DP:PL 0/0:50:81:50:0,81,1529 +chrX 2815784 . A . . END=2815784 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,1266 +chrX 2815785 . A . . END=2815786 GT:DP:GQ:MIN_DP:PL 0/0:48:89:48:0,89,1410 +chrX 2815787 . C . . END=2815787 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,1081 +chrX 2815788 . T . . END=2815788 GT:DP:GQ:MIN_DP:PL 0/0:53:20:53:0,20,1454 +chrX 2815789 . G . . END=2815796 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1057 +chrX 2815797 . A . . END=2815797 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 2815798 . G . . END=2815800 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,828 +chrX 2815801 . A . . END=2815801 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 2815802 . C CAT, 1592.03 . AS_QUALapprox=|1606|0;AS_VarDP=2|45|0;BaseQRankSum=-0.711;DP=51;MQRankSum=-0.226;QUALapprox=1606;RAW_GT_COUNT=0,0,1;RAW_MQandDP=179936,51;ReadPosRankSum=1.213;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:2,45,0:47:90:1606,90,0,1612,134,1656:0,2,20,25 +chrX 2815803 . A . . END=2815820 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,111,1665 +chrX 2815821 . A ACACACACACACC,ACACACACACACACC,ACACACACACACACACC,ACACACACACACACACACC, 2184.02 . AS_QUALapprox=|439|1596|1950|1065|0;AS_VarDP=0|0|13|23|1|0;DP=57;QUALapprox=2201;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201185,57;VarDP=37 GT:AD:DP:GQ:PL:SB 2/3:0,0,13,23,1,0:37:99:2201,1807,1762,762,735,605,411,369,0,251,1255,1212,612,335,1136,1584,1541,722,380,1211,1480:0,0,17,20 +chrX 2815822 . C . . END=2815822 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 2815823 . C . . END=2815824 GT:DP:GQ:MIN_DP:PL 0/0:54:0:54:0,0,1112 +chrX 2815825 . A . . END=2815826 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 2815827 . T . . END=2815828 GT:DP:GQ:MIN_DP:PL 0/0:54:0:54:0,0,1230 +chrX 2815829 . A . . END=2815829 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 2815830 . A . . END=2815830 GT:DP:GQ:MIN_DP:PL 0/0:57:0:57:0,0,1355 +chrX 2815831 . A . . END=2815831 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 2815832 . T . . END=2815834 GT:DP:GQ:MIN_DP:PL 0/0:55:0:55:0,0,1225 +chrX 2815835 . A . . END=2815835 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 2815836 . A . . END=2815836 GT:DP:GQ:MIN_DP:PL 0/0:55:12:55:0,12,1525 +chrX 2815837 . T . . END=2815838 GT:DP:GQ:MIN_DP:PL 0/0:59:28:57:0,28,1594 +chrX 2815839 . T . . END=2815840 GT:DP:GQ:MIN_DP:PL 0/0:60:9:60:0,9,1602 +chrX 2815841 . A . . END=2816628 GT:DP:GQ:MIN_DP:PL 0/0:65:44:65:0,44,1656 +chrX 2816629 . A G, 681.64 . AS_QUALapprox=|689|0;AS_VarDP=39|27|0;BaseQRankSum=-0.049;DP=69;MQRankSum=0.000;QUALapprox=689;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=-0.672;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:39,27,0:66:99:689,0,1087,806,1168,1974:19,20,16,11 +chrX 2816630 . G . . END=2816679 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 2816680 . ATT A, 1854.03 . AS_QUALapprox=|1868|0;AS_VarDP=1|53|0;DP=69;MQRankSum=0.000;QUALapprox=1868;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:1,53,0:54:99:1868,128,0,1871,160,1903:1,0,27,26 +chrX 2816683 . T . . END=2816796 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,105,1800 +chrX 2816797 . G A, 1689.06 . AS_QUALapprox=|1703|0;AS_VarDP=0|51|0;DP=54;QUALapprox=1703;RAW_GT_COUNT=0,0,1;RAW_MQandDP=188551,54;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1703,153,0,1703,153,1703:0,0,25,26 +chrX 2816798 . T . . END=2816888 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,113,1698 +chrX 2816889 . G C, 2155.06 . AS_QUALapprox=|2169|0;AS_VarDP=0|52|0;DP=55;QUALapprox=2169;RAW_GT_COUNT=0,0,1;RAW_MQandDP=191673,55;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,52,0:52:99:0|1:2816889_G_C:2169,156,0,2169,156,2169:2816889:0,0,22,30 +chrX 2816890 . C . . END=2816906 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 2816907 . AC A, 2026.03 . AS_QUALapprox=|2040|0;AS_VarDP=0|48|0;DP=51;QUALapprox=2040;RAW_GT_COUNT=0,0,1;RAW_MQandDP=181296,51;VarDP=48 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,48,0:48:99:0|1:2816889_G_C:2040,144,0,2040,144,2040:2816889:0,0,17,31 +chrX 2816909 . C . . END=2817078 GT:DP:GQ:MIN_DP:PL 0/0:49:57:49:0,57,1305 +chrX 2817079 . A . . END=2817098 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,857 +chrX 2817099 . G GAGAGAC, 1422.02 . AS_QUALapprox=|1496|0;AS_VarDP=0|34|0;DP=39;QUALapprox=1496;RAW_GT_COUNT=0,0,1;RAW_MQandDP=131605,39;VarDP=34 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,34,0:34:99:0|1:2817099_G_GAGAGAC:1496,102,0,1482,111,1535:2817099:0,0,22,10 +chrX 2817100 . A . . END=2817107 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,863 +chrX 2817108 . A AG, 1325 . AS_QUALapprox=|1409|0;AS_VarDP=0|32|0;DP=34;QUALapprox=1409;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111526,34;VarDP=32 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,32,0:32:96:0|1:2817099_G_GAGAGAC:1409,96,0,1385,96,1379:2817099:0,0,20,10 +chrX 2817109 . G . . END=2817110 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,839 +chrX 2817111 . A AGGGAGAGAGGG, 1407.01 . AS_QUALapprox=|1488|0;AS_VarDP=0|34|0;DP=36;QUALapprox=1488;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118726,36;VarDP=34 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,34,0:34:99:0|1:2817099_G_GAGAGAC:1488,102,0,1466,102,1464:2817099:0,0,21,11 +chrX 2817112 . A . . END=2817121 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,655 +chrX 2817122 . A G, 1214.05 . AS_QUALapprox=|1296|0;AS_VarDP=0|31|0;DP=33;QUALapprox=1296;RAW_GT_COUNT=0,0,1;RAW_MQandDP=107695,33;VarDP=31 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,31,0:31:93:0|1:2817099_G_GAGAGAC:1296,93,0,1275,93,1276:2817099:0,0,21,8 +chrX 2817123 . A . . END=2817149 GT:DP:GQ:MIN_DP:PL 0/0:28:66:28:0,66,715 +chrX 2817150 . A AGGAG, 1120.03 . AS_QUALapprox=|1134|0;AS_VarDP=0|26|0;DP=36;QUALapprox=1134;RAW_GT_COUNT=0,0,1;RAW_MQandDP=118495,36;VarDP=26 GT:AD:DP:GQ:PL:SB 1/1:0,26,0:26:78:1134,78,0,1135,78,1135:0,0,15,11 +chrX 2817151 . G . . END=2817497 GT:DP:GQ:MIN_DP:PL 0/0:37:39:36:0,39,1021 +chrX 2817498 . G A, 1827.06 . AS_QUALapprox=|1841|0;AS_VarDP=0|57|0;DP=60;QUALapprox=1841;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1841,171,0,1841,171,1841:0,0,24,33 +chrX 2817499 . A . . END=2817579 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 2817580 . T C, 1881.06 . AS_QUALapprox=|1895|0;AS_VarDP=0|60|0;DP=60;QUALapprox=1895;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:1895,179,0,1895,179,1895:0,0,30,30 +chrX 2817581 . T . . END=2817699 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,101,1549 +chrX 2817700 . T A, 1559.06 . AS_QUALapprox=|1573|0;AS_VarDP=0|47|0;DP=50;QUALapprox=1573;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1573,141,0,1573,141,1573:0,0,26,21 +chrX 2817701 . T . . END=2817780 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,101,1400 +chrX 2817781 . C CATT, 2033.03 . AS_QUALapprox=|2047|0;AS_VarDP=0|46|0;DP=48;QUALapprox=2047;RAW_GT_COUNT=0,0,1;RAW_MQandDP=170800,48;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:2047,138,0,2047,138,2047:0,0,23,23 +chrX 2817782 . A . . END=2817884 GT:DP:GQ:MIN_DP:PL 0/0:46:43:46:0,43,1271 +chrX 2817885 . G A, 2020.06 . AS_QUALapprox=|2034|0;AS_VarDP=0|62|0;DP=63;QUALapprox=2034;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:0,62,0:62:99:2034,186,0,2034,186,2034:0,0,37,25 +chrX 2817886 . T . . END=2818078 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 2818079 . TATTA T, 2755.03 . AS_QUALapprox=|2769|0;AS_VarDP=0|62|0;DP=67;QUALapprox=2769;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:0,62,0:62:99:2769,187,0,2769,187,2769:0,0,27,35 +chrX 2818084 . A . . END=2818154 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 2818155 . C A, 2313.06 . AS_QUALapprox=|2327|0;AS_VarDP=0|69|0;DP=69;QUALapprox=2327;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=69 GT:AD:DP:GQ:PL:SB 1/1:0,69,0:69:99:2327,208,0,2327,208,2327:0,0,36,33 +chrX 2818156 . C . . END=2819055 GT:DP:GQ:MIN_DP:PL 0/0:59:77:59:0,77,1271 +chrX 2819056 . G A, 2244.06 . AS_QUALapprox=|2258|0;AS_VarDP=0|69|0;DP=71;QUALapprox=2258;RAW_GT_COUNT=0,0,1;RAW_MQandDP=254025,71;VarDP=69 GT:AD:DP:GQ:PL:SB 1/1:0,69,0:69:99:2258,207,0,2258,207,2258:0,0,30,39 +chrX 2819057 . G . . END=2819152 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 2819153 . C T, 1813.06 . AS_QUALapprox=|1827|0;AS_VarDP=0|55|0;DP=56;QUALapprox=1827;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1827,165,0,1827,165,1827:0,0,28,27 +chrX 2819154 . T . . END=2819425 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,117,1514 +chrX 2819426 . C CA, 1577.03 . AS_QUALapprox=|1591|0;AS_VarDP=0|56|0;DP=59;QUALapprox=1591;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1591,168,0,1591,168,1591:0,0,21,35 +chrX 2819427 . A . . END=2819494 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 2819495 . A G, 1549.06 . AS_QUALapprox=|1563|0;AS_VarDP=0|47|0;DP=49;QUALapprox=1563;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1563,141,0,1563,141,1563:0,0,20,27 +chrX 2819496 . G . . END=2819791 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,114,1523 +chrX 2819792 . TC T, 1937.03 . AS_QUALapprox=|1951|0;AS_VarDP=0|49|0;DP=51;QUALapprox=1951;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1951,147,0,1951,147,1951:0,0,25,24 +chrX 2819794 . A . . END=2819809 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,108,1420 +chrX 2819810 . G T, 1486.06 . AS_QUALapprox=|1500|0;AS_VarDP=0|45|0;DP=47;QUALapprox=1500;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;VarDP=45 GT:AD:DP:GQ:PL:SB 1/1:0,45,0:45:99:1500,135,0,1500,135,1500:0,0,22,23 +chrX 2819811 . G . . END=2822281 GT:DP:GQ:MIN_DP:PL 0/0:59:68:59:0,68,1022 +chrX 2822282 . G T, 1982.06 . AS_QUALapprox=|1996|0;AS_VarDP=1|60|0;BaseQRankSum=2.816;DP=64;MQRankSum=0.000;QUALapprox=1996;RAW_GT_COUNT=0,0,1;RAW_MQandDP=228281,64;ReadPosRankSum=0.085;VarDP=61 GT:AD:DP:GQ:PL:SB 1/1:1,60,0:61:99:1996,173,0,1999,180,2006:1,0,27,33 +chrX 2822283 . G . . END=2822639 GT:DP:GQ:MIN_DP:PL 0/0:57:91:57:0,91,1310 +chrX 2822640 . G C, 2343.06 . AS_QUALapprox=|2357|0;AS_VarDP=0|73|0;DP=77;QUALapprox=2357;RAW_GT_COUNT=0,0,1;RAW_MQandDP=277200,77;VarDP=73 GT:AD:DP:GQ:PL:SB 1/1:0,73,0:73:99:2357,219,0,2357,219,2357:0,0,47,26 +chrX 2822641 . C . . END=2822849 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,100,1661 +chrX 2822850 . C T, 1688.06 . AS_QUALapprox=|1702|0;AS_VarDP=0|51|0;DP=54;QUALapprox=1702;RAW_GT_COUNT=0,0,1;RAW_MQandDP=193009,54;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1702,153,0,1702,153,1702:0,0,20,31 +chrX 2822851 . G . . END=2822963 GT:DP:GQ:MIN_DP:PL 0/0:40:52:40:0,52,919 +chrX 2822964 . T . . END=2822964 GT:DP:GQ:MIN_DP:PL 0/0:29:13:29:0,13,800 +chrX 2822965 . G . . END=2822973 GT:DP:GQ:MIN_DP:PL 0/0:30:27:29:0,27,818 +chrX 2822974 . T . . END=2822974 GT:DP:GQ:MIN_DP:PL 0/0:36:9:36:0,9,923 +chrX 2822975 . C . . END=2822975 GT:DP:GQ:MIN_DP:PL 0/0:35:87:35:0,87,1305 +chrX 2822976 . T . . END=2822976 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,838 +chrX 2822977 . C CAA, 28.60 . AS_QUALapprox=|36|0;AS_VarDP=14|5|0;BaseQRankSum=-1.656;DP=40;MQRankSum=0.000;QUALapprox=36;RAW_GT_COUNT=0,1,0;RAW_MQandDP=144000,40;ReadPosRankSum=-1.395;VarDP=19 GT:AD:DP:GQ:PL:SB 0/1:14,5,0:19:36:36,0,344,78,357,435:13,1,0,5 +chrX 2822978 . A . . END=2823002 GT:DP:GQ:MIN_DP:PL 0/0:37:87:37:0,87,1070 +chrX 2823003 . C A, 1160.06 . AS_QUALapprox=|1174|0;AS_VarDP=0|38|0;DP=39;QUALapprox=1174;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140400,39;VarDP=38 GT:AD:DP:GQ:PL:SB 1/1:0,38,0:38:99:1174,114,0,1174,114,1174:0,0,20,18 +chrX 2823004 . T . . END=2823036 GT:DP:GQ:MIN_DP:PL 0/0:44:66:44:0,66,1045 +chrX 2823037 . C A,T, 622.64 . AS_QUALapprox=|0|630|0;AS_VarDP=21|1|23|0;BaseQRankSum=2.611;DP=50;MQRankSum=0.000;QUALapprox=630;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=1.024;VarDP=45 GT:AD:DP:GQ:PL:SB 0/2:21,1,23,0:45:99:630,708,1754,0,570,518,745,1573,635,1565:12,9,12,12 +chrX 2823038 . A . . END=2824076 GT:DP:GQ:MIN_DP:PL 0/0:57:70:57:0,70,1440 +chrX 2824077 . G A, 1791.06 . AS_QUALapprox=|1805|0;AS_VarDP=0|56|0;DP=58;QUALapprox=1805;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1805,168,0,1805,168,1805:0,0,40,16 +chrX 2824078 . G . . END=2825017 GT:DP:GQ:MIN_DP:PL 0/0:64:83:64:0,83,1449 +chrX 2825018 . TTCA T, 1822.03 . AS_QUALapprox=|1836|0;AS_VarDP=0|41|0;DP=50;QUALapprox=1836;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=41 GT:AD:DP:GQ:PL:SB 1/1:0,41,0:41:99:1836,124,0,1836,124,1836:0,0,25,16 +chrX 2825022 . T . . END=2825585 GT:DP:GQ:MIN_DP:PL 0/0:68:84:68:0,84,1351 +chrX 2825586 . C A, 2372.06 . AS_QUALapprox=|2386|0;AS_VarDP=0|71|0;DP=73;QUALapprox=2386;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;VarDP=71 GT:AD:DP:GQ:PL:SB 1/1:0,71,0:71:99:2386,214,0,2386,214,2386:0,0,34,37 +chrX 2825587 . C . . END=2825619 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 2825620 . G A, 2080.06 . AS_QUALapprox=|2094|0;AS_VarDP=0|62|0;DP=63;QUALapprox=2094;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:0,62,0:62:99:2094,186,0,2094,186,2094:0,0,26,36 +chrX 2825621 . T . . END=2825912 GT:DP:GQ:MIN_DP:PL 0/0:49:89:49:0,89,1196 +chrX 2825913 . C T, 1588.06 . AS_QUALapprox=|1602|0;AS_VarDP=0|49|0;DP=51;QUALapprox=1602;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1602,147,0,1602,147,1602:0,0,20,29 +chrX 2825914 . G . . END=2826360 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,102,1530 +chrX 2826361 . A G, 1301.06 . AS_QUALapprox=|1315|0;AS_VarDP=0|40|0;DP=42;QUALapprox=1315;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151200,42;VarDP=40 GT:AD:DP:GQ:PL:SB 1/1:0,40,0:40:99:1315,120,0,1315,120,1315:0,0,22,18 +chrX 2826362 . T . . END=2826723 GT:DP:GQ:MIN_DP:PL 0/0:64:88:64:0,88,1290 +chrX 2826724 . C T, 2030.06 . AS_QUALapprox=|2044|0;AS_VarDP=0|63|0;DP=63;QUALapprox=2044;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=63 GT:AD:DP:GQ:PL:SB 1/1:0,63,0:63:99:2044,189,0,2044,189,2044:0,0,32,31 +chrX 2826725 . G . . END=2827052 GT:DP:GQ:MIN_DP:PL 0/0:62:89:62:0,89,1713 +chrX 2827053 . CACTCATACATGCATGCACTCACACCATCATCACTCATTCA C, 1050.03 . AS_QUALapprox=|1064|0;AS_VarDP=0|24|0;DP=36;QUALapprox=1064;RAW_GT_COUNT=0,0,1;RAW_MQandDP=125051,36;VarDP=24 GT:AD:DP:GQ:PL:SB 1/1:0,24,0:24:78:1064,78,0,1064,78,1064:0,0,14,10 +chrX 2827094 . A . . END=2828516 GT:DP:GQ:MIN_DP:PL 0/0:58:65:58:0,65,963 +chrX 2828517 . T C, 1971.06 . AS_QUALapprox=|1985|0;AS_VarDP=0|60|0;DP=63;QUALapprox=1985;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:1985,180,0,1985,180,1985:0,0,31,29 +chrX 2828518 . A . . END=2828820 GT:DP:GQ:MIN_DP:PL 0/0:69:56:69:0,56,1650 +chrX 2828821 . G A, 1910.06 . AS_QUALapprox=|1924|0;AS_VarDP=0|62|0;DP=64;QUALapprox=1924;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:0,62,0:62:99:1924,185,0,1924,185,1924:0,0,27,35 +chrX 2828822 . C . . END=2828878 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 2828879 . T TG, 2175.03 . AS_QUALapprox=|2189|0;AS_VarDP=0|63|0;DP=65;QUALapprox=2189;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=63 GT:AD:DP:GQ:PL:SB 1/1:0,63,0:63:99:2189,188,0,2189,188,2189:0,0,25,38 +chrX 2828880 . G . . END=2829057 GT:DP:GQ:MIN_DP:PL 0/0:57:40:57:0,40,1155 +chrX 2829058 . G . . END=2829059 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,878 +chrX 2829060 . T . . END=2829062 GT:DP:GQ:MIN_DP:PL 0/0:33:24:31:0,24,909 +chrX 2829063 . C . . END=2829081 GT:DP:GQ:MIN_DP:PL 0/0:27:0:27:0,0,639 +chrX 2829082 . C . . END=2829082 GT:DP:GQ:MIN_DP:PL 0/0:33:56:33:0,56,701 +chrX 2829083 . G . . END=2829163 GT:DP:GQ:MIN_DP:PL 0/0:24:0:24:0,0,461 +chrX 2829164 . T . . END=2829164 GT:DP:GQ:MIN_DP:PL 0/0:27:43:27:0,43,531 +chrX 2829165 . G . . END=2829175 GT:DP:GQ:MIN_DP:PL 0/0:20:0:20:0,0,411 +chrX 2829176 . G . . END=2829176 GT:DP:GQ:MIN_DP:PL 0/0:42:76:42:0,76,1169 +chrX 2829177 . C . . END=2829177 GT:DP:GQ:MIN_DP:PL 0/0:29:0:29:0,0,629 +chrX 2829178 . G . . END=2829178 GT:DP:GQ:MIN_DP:PL 0/0:40:85:40:0,85,1190 +chrX 2829179 . A . . END=2829179 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,741 +chrX 2829180 . G . . END=2829185 GT:DP:GQ:MIN_DP:PL 0/0:35:23:29:0,23,730 +chrX 2829186 . C . . END=2829187 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,739 +chrX 2829188 . G . . END=2829196 GT:DP:GQ:MIN_DP:PL 0/0:42:31:35:0,31,921 +chrX 2829197 . A . . END=2829197 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,1064 +chrX 2829198 . G . . END=2829199 GT:DP:GQ:MIN_DP:PL 0/0:43:59:43:0,59,1255 +chrX 2829200 . T . . END=2829200 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,772 +chrX 2829201 . C . . END=2829203 GT:DP:GQ:MIN_DP:PL 0/0:41:39:36:0,39,1081 +chrX 2829204 . A . . END=2829204 GT:DP:GQ:MIN_DP:PL 0/0:37:2:37:0,2,968 +chrX 2829205 . G . . END=2829206 GT:DP:GQ:MIN_DP:PL 0/0:42:39:41:0,39,1187 +chrX 2829207 . T . . END=2829207 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,877 +chrX 2829208 . T . . END=2829220 GT:DP:GQ:MIN_DP:PL 0/0:37:27:29:0,27,809 +chrX 2829221 . A . . END=2829221 GT:DP:GQ:MIN_DP:PL 0/0:37:17:37:0,17,977 +chrX 2829222 . G . . END=2829223 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,100,1374 +chrX 2829224 . A . . END=2829224 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,814 +chrX 2829225 . G . . END=2829228 GT:DP:GQ:MIN_DP:PL 0/0:46:78:46:0,78,1319 +chrX 2829229 . A . . END=2829229 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,889 +chrX 2829230 . G . . END=2829233 GT:DP:GQ:MIN_DP:PL 0/0:45:54:45:0,54,1169 +chrX 2829234 . T . . END=2829234 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,833 +chrX 2829235 . G . . END=2829396 GT:DP:GQ:MIN_DP:PL 0/0:51:34:40:0,34,992 +chrX 2829397 . T . . END=2829397 GT:DP:GQ:MIN_DP:PL 0/0:56:16:56:0,16,1310 +chrX 2829398 . G . . END=2829401 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 2829402 . A . . END=2829402 GT:DP:GQ:MIN_DP:PL 0/0:48:1:48:0,1,1241 +chrX 2829403 . G . . END=2829459 GT:DP:GQ:MIN_DP:PL 0/0:41:25:37:0,25,939 +chrX 2829460 . A . . END=2829460 GT:DP:GQ:MIN_DP:PL 0/0:37:12:37:0,12,938 +chrX 2829461 . G . . END=2829463 GT:DP:GQ:MIN_DP:PL 0/0:40:38:34:0,38,883 +chrX 2829464 . T . . END=2829464 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,874 +chrX 2829465 . G . . END=2829466 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,120,1800 +chrX 2829467 . A . . END=2829467 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,1031 +chrX 2829468 . G . . END=2829472 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,117,1755 +chrX 2829473 . C T, 295.64 . AS_QUALapprox=|303|0;AS_VarDP=16|12|0;BaseQRankSum=0.123;DP=35;MQRankSum=0.000;QUALapprox=303;RAW_GT_COUNT=0,1,0;RAW_MQandDP=126000,35;ReadPosRankSum=-1.371;VarDP=28 GT:AD:DP:GQ:PL:SB 0/1:16,12,0:28:99:303,0,417,351,453,804:13,3,8,4 +chrX 2829474 . T . . END=2829505 GT:DP:GQ:MIN_DP:PL 0/0:38:24:32:0,24,933 +chrX 2829506 . C . . END=2829506 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,889 +chrX 2829507 . G . . END=2829509 GT:DP:GQ:MIN_DP:PL 0/0:37:42:37:0,42,1072 +chrX 2829510 . T . . END=2829511 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,590 +chrX 2829512 . G . . END=2829515 GT:DP:GQ:MIN_DP:PL 0/0:42:57:42:0,57,1050 +chrX 2829516 . A . . END=2829516 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,794 +chrX 2829517 . G . . END=2829518 GT:DP:GQ:MIN_DP:PL 0/0:40:82:40:0,82,1196 +chrX 2829519 . A . . END=2829519 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,883 +chrX 2829520 . G . . END=2829530 GT:DP:GQ:MIN_DP:PL 0/0:40:41:40:0,41,969 +chrX 2829531 . A . . END=2829531 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,1019 +chrX 2829532 . G . . END=2829536 GT:DP:GQ:MIN_DP:PL 0/0:39:93:39:0,93,1068 +chrX 2829537 . A . . END=2829537 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,1002 +chrX 2829538 . G . . END=2829583 GT:DP:GQ:MIN_DP:PL 0/0:46:33:42:0,33,1063 +chrX 2829584 . T . . END=2829584 GT:DP:GQ:MIN_DP:PL 0/0:50:0:50:0,0,1260 +chrX 2829585 . G . . END=2830009 GT:DP:GQ:MIN_DP:PL 0/0:53:52:53:0,52,1168 +chrX 2830010 . T C, 1720.06 . AS_QUALapprox=|1734|0;AS_VarDP=0|55|0;DP=56;QUALapprox=1734;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198265,56;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1734,165,0,1734,165,1734:0,0,21,34 +chrX 2830011 . G . . END=2830211 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 2830212 . G C, 2038.06 . AS_QUALapprox=|2052|0;AS_VarDP=0|63|0;DP=66;QUALapprox=2052;RAW_GT_COUNT=0,0,1;RAW_MQandDP=233986,66;VarDP=63 GT:AD:DP:GQ:PL:SB 1/1:0,63,0:63:99:2052,189,0,2052,189,2052:0,0,38,25 +chrX 2830213 . C . . END=2830250 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 2830251 . C G, 1906.06 . AS_QUALapprox=|1920|0;AS_VarDP=0|61|0;DP=64;QUALapprox=1920;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223627,64;VarDP=61 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:1920,182,0,1920,182,1920:0,0,32,29 +chrX 2830252 . A . . END=2830379 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 2830380 . G A, 1554.06 . AS_QUALapprox=|1568|0;AS_VarDP=0|48|0;DP=50;QUALapprox=1568;RAW_GT_COUNT=0,0,1;RAW_MQandDP=177696,50;VarDP=48 GT:AD:DP:GQ:PL:SB 1/1:0,48,0:48:99:1568,143,0,1568,143,1568:0,0,21,27 +chrX 2830381 . G . . END=2831479 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,109,1420 +chrX 2831480 . T C, 1831.06 . AS_QUALapprox=|1845|0;AS_VarDP=0|59|0;DP=62;QUALapprox=1845;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1845,177,0,1845,177,1845:0,0,37,22 +chrX 2831481 . G . . END=2832080 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,118,1744 +chrX 2832081 . C T, 1947.06 . AS_QUALapprox=|1961|0;AS_VarDP=1|59|0;BaseQRankSum=-0.200;DP=61;MQRankSum=0.000;QUALapprox=1961;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;ReadPosRankSum=-1.502;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:1,59,0:60:99:1961,145,0,1964,177,1995:0,1,30,29 +chrX 2832082 . C . . END=2832412 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 2832413 . C CT, 2326.03 . AS_QUALapprox=|2340|0;AS_VarDP=0|63|0;DP=68;QUALapprox=2340;RAW_GT_COUNT=0,0,1;RAW_MQandDP=243125,68;VarDP=63 GT:AD:DP:GQ:PL:SB 1/1:0,63,0:63:99:2340,190,0,2340,190,2340:0,0,32,31 +chrX 2832414 . T . . END=2832726 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1624 +chrX 2832727 . G T, 897.64 . AS_QUALapprox=|905|0;AS_VarDP=22|33|0;BaseQRankSum=0.604;DP=55;MQRankSum=0.000;QUALapprox=905;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-1.306;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:22,33,0:55:99:905,0,505,970,604,1574:12,10,18,15 +chrX 2832728 . T . . END=2833118 GT:DP:GQ:MIN_DP:PL 0/0:61:97:61:0,97,1498 +chrX 2833119 . T C, 1821.06 . AS_QUALapprox=|1835|0;AS_VarDP=0|56|0;DP=57;QUALapprox=1835;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1835,168,0,1835,168,1835:0,0,30,26 +chrX 2833120 . T . . END=2833658 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,99,1541 +chrX 2833659 . T C, 1689.06 . AS_QUALapprox=|1703|0;AS_VarDP=0|51|0;DP=52;QUALapprox=1703;RAW_GT_COUNT=0,0,1;RAW_MQandDP=185013,52;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1703,153,0,1703,153,1703:0,0,31,20 +chrX 2833660 . T . . END=2833862 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 2833863 . C G, 912.64 . AS_QUALapprox=|920|0;AS_VarDP=39|38|0;BaseQRankSum=-0.472;DP=79;MQRankSum=0.000;QUALapprox=920;RAW_GT_COUNT=0,1,0;RAW_MQandDP=284400,79;ReadPosRankSum=0.780;VarDP=77 GT:AD:DP:GQ:PL:SB 0/1:39,38,0:77:99:920,0,995,1037,1108,2145:22,17,16,22 +chrX 2833864 . T . . END=2834028 GT:DP:GQ:MIN_DP:PL 0/0:79:99:79:0,120,1800 +chrX 2834029 . C T, 1091.64 . AS_QUALapprox=|1099|0;AS_VarDP=29|38|0;BaseQRankSum=2.549;DP=69;MQRankSum=0.000;QUALapprox=1099;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=0.810;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:29,38,0:67:99:1099,0,712,1186,826,2012:18,11,23,15 +chrX 2834030 . G . . END=2834291 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 2834292 . C T, 1086.64 . AS_QUALapprox=|1094|0;AS_VarDP=23|41|0;BaseQRankSum=1.296;DP=65;MQRankSum=0.000;QUALapprox=1094;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=-0.147;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:23,41,0:64:99:1094,0,467,1162,590,1752:9,14,17,24 +chrX 2834293 . G . . END=2834574 GT:DP:GQ:MIN_DP:PL 0/0:54:61:54:0,61,1361 +chrX 2834575 . G GA, 1037.60 . AS_QUALapprox=|1045|0;AS_VarDP=18|32|0;BaseQRankSum=-0.076;DP=51;MQRankSum=-0.708;QUALapprox=1045;RAW_GT_COUNT=0,1,0;RAW_MQandDP=181600,51;ReadPosRankSum=0.394;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:18,32,0:50:99:1045,0,522,1100,618,1718:11,7,15,17 +chrX 2834576 . A . . END=2834665 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 2834666 . A G, 747.64 . AS_QUALapprox=|755|0;AS_VarDP=28|28|0;BaseQRankSum=0.657;DP=59;MQRankSum=-0.964;QUALapprox=755;RAW_GT_COUNT=0,1,0;RAW_MQandDP=210400,59;ReadPosRankSum=0.590;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:28,28,0:56:99:755,0,735,839,819,1658:14,14,16,12 +chrX 2834667 . T . . END=2835140 GT:DP:GQ:MIN_DP:PL 0/0:60:98:60:0,98,1534 +chrX 2835141 . G C, 675.64 . AS_QUALapprox=|683|0;AS_VarDP=28|27|0;BaseQRankSum=-1.529;DP=55;MQRankSum=0.000;QUALapprox=683;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-1.381;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:28,27,0:55:99:683,0,753,767,834,1601:14,14,15,12 +chrX 2835142 . A . . END=2835485 GT:DP:GQ:MIN_DP:PL 0/0:63:75:63:0,75,1304 +chrX 2835486 . T C, 962.64 . AS_QUALapprox=|970|0;AS_VarDP=38|36|0;BaseQRankSum=1.605;DP=80;MQRankSum=-1.667;QUALapprox=970;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226703,80;ReadPosRankSum=0.871;VarDP=74 GT:AD:DP:GQ:PL:SB 0/1:38,36,0:74:99:970,0,973,1084,1082,2166:18,20,22,14 +chrX 2835487 . C . . END=2836672 GT:DP:GQ:MIN_DP:PL 0/0:53:69:53:0,69,1052 +chrX 2836673 . CAAA C, 450.60 . AS_QUALapprox=|458|0;AS_VarDP=18|13|0;BaseQRankSum=-2.959;DP=47;MQRankSum=0.000;QUALapprox=458;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=0.464;VarDP=31 GT:AD:DP:GQ:PL:SB 0/1:18,13,0:31:99:458,0,564,512,603,1115:10,8,6,7 +chrX 2836677 . A . . END=2836751 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,99,1135 +chrX 2836752 . T C, 841.64 . AS_QUALapprox=|849|0;AS_VarDP=21|32|0;BaseQRankSum=-0.680;DP=54;MQRankSum=0.000;QUALapprox=849;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=-2.146;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:21,32,0:53:99:849,0,515,911,611,1522:10,11,16,16 +chrX 2836753 . G . . END=2836851 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,112,1762 +chrX 2836852 . T A, 1545.06 . AS_QUALapprox=|1559|0;AS_VarDP=0|46|0;DP=47;QUALapprox=1559;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1559,138,0,1559,138,1559:0,0,21,25 +chrX 2836853 . G . . END=2837837 GT:DP:GQ:MIN_DP:PL 0/0:52:85:52:0,85,1132 +chrX 2837838 . TACACACAC T, 945.60 . AS_QUALapprox=|953|0;AS_VarDP=29|25|0;BaseQRankSum=1.419;DP=66;MQRankSum=0.000;QUALapprox=953;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=-0.223;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:29,25,0:54:99:953,0,1086,1040,1162,2202:13,16,11,14 +chrX 2837847 . A . . END=2837883 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 2837884 . C T, 461.64 . AS_QUALapprox=|469|0;AS_VarDP=29|20|0;BaseQRankSum=-0.307;DP=52;MQRankSum=0.000;QUALapprox=469;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=0.865;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:29,20,0:49:99:469,0,772,555,831,1386:12,17,10,10 +chrX 2837885 . G . . END=2838028 GT:DP:GQ:MIN_DP:PL 0/0:42:68:42:0,68,1067 +chrX 2838029 . C CA,CAA, 250.60 . AS_QUALapprox=|258|5|0;AS_VarDP=20|13|2|0;BaseQRankSum=0.213;DP=42;MQRankSum=0.000;QUALapprox=258;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151200,42;ReadPosRankSum=0.400;VarDP=35 GT:AD:DP:GQ:PL:SB 0/1:20,13,2,0:35:99:258,0,406,253,454,908,311,486,845,863:7,13,6,9 +chrX 2838030 . A . . END=2838371 GT:DP:GQ:MIN_DP:PL 0/0:49:91:49:0,91,1269 +chrX 2838372 . T C, 436.64 . AS_QUALapprox=|444|0;AS_VarDP=25|19|0;BaseQRankSum=-1.834;DP=45;MQRankSum=0.000;QUALapprox=444;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=0.948;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:25,19,0:44:99:444,0,692,518,749,1268:11,14,11,8 +chrX 2838373 . A . . END=2838451 GT:DP:GQ:MIN_DP:PL 0/0:40:51:40:0,51,765 +chrX 2838452 . C CCCCTCCCTTCCTCCTT, 1262.03 . AS_QUALapprox=|1276|0;AS_VarDP=0|29|0;DP=33;QUALapprox=1276;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115124,33;VarDP=29 GT:AD:DP:GQ:PL:SB 1/1:0,29,0:29:87:1276,87,0,1277,87,1278:0,0,8,21 +chrX 2838453 . C . . END=2838465 GT:DP:GQ:MIN_DP:PL 0/0:34:69:34:0,69,1035 +chrX 2838466 . T . . END=2838467 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,620 +chrX 2838468 . T . . END=2838469 GT:DP:GQ:MIN_DP:PL 0/0:37:84:37:0,84,1260 +chrX 2838470 . T . . END=2838470 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,825 +chrX 2838471 . C . . END=2838472 GT:DP:GQ:MIN_DP:PL 0/0:38:93:38:0,93,1395 +chrX 2838473 . T . . END=2838474 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,839 +chrX 2838475 . C . . END=2838477 GT:DP:GQ:MIN_DP:PL 0/0:38:90:38:0,90,1350 +chrX 2838478 . T . . END=2838478 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,849 +chrX 2838479 . C . . END=2838480 GT:DP:GQ:MIN_DP:PL 0/0:37:93:37:0,93,1395 +chrX 2838481 . T . . END=2838481 GT:DP:GQ:MIN_DP:PL 0/0:38:10:38:0,10,1062 +chrX 2838482 . T . . END=2838482 GT:DP:GQ:MIN_DP:PL 0/0:38:90:38:0,90,1221 +chrX 2838483 . T . . END=2838483 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,1058 +chrX 2838484 . T . . END=2838484 GT:DP:GQ:MIN_DP:PL 0/0:36:84:36:0,84,1260 +chrX 2838485 . T . . END=2838487 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,959 +chrX 2838488 . T . . END=2838491 GT:DP:GQ:MIN_DP:PL 0/0:37:42:37:0,42,1087 +chrX 2838492 . C . . END=2838492 GT:DP:GQ:MIN_DP:PL 0/0:36:4:36:0,4,993 +chrX 2838493 . T . . END=2838509 GT:DP:GQ:MIN_DP:PL 0/0:32:35:28:0,35,815 +chrX 2838510 . A . . END=2838510 GT:DP:GQ:MIN_DP:PL 0/0:31:8:31:0,8,726 +chrX 2838511 . C . . END=2838774 GT:DP:GQ:MIN_DP:PL 0/0:45:46:45:0,46,948 +chrX 2838775 . AT A, 754.60 . AS_QUALapprox=|762|0;AS_VarDP=23|28|0;BaseQRankSum=-0.672;DP=56;MQRankSum=0.000;QUALapprox=762;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=1.326;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:23,28,0:51:99:762,0,594,831,679,1509:14,9,13,15 +chrX 2838777 . T . . END=2839191 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,104,1498 +chrX 2839192 . A G, 727.64 . AS_QUALapprox=|735|0;AS_VarDP=24|27|0;BaseQRankSum=0.219;DP=57;MQRankSum=0.000;QUALapprox=735;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=0.482;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:24,27,0:51:99:735,0,631,807,712,1519:14,10,18,9 +chrX 2839193 . T . . END=2839357 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,113,1597 +chrX 2839358 . C T, 792.64 . AS_QUALapprox=|800|0;AS_VarDP=30|29|0;BaseQRankSum=0.716;DP=60;MQRankSum=0.000;QUALapprox=800;RAW_GT_COUNT=0,1,0;RAW_MQandDP=213184,60;ReadPosRankSum=-1.047;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:30,29,0:59:99:800,0,814,891,901,1791:14,16,13,16 +chrX 2839359 . T . . END=2839706 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,115,1633 +chrX 2839707 . G A, 1998.06 . AS_QUALapprox=|2012|0;AS_VarDP=0|52|0;DP=53;QUALapprox=2012;RAW_GT_COUNT=0,0,1;RAW_MQandDP=188174,53;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:2012,156,0,2012,156,2012:0,0,22,30 +chrX 2839708 . C . . END=2839712 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 2839713 . T C, 768.64 . AS_QUALapprox=|776|0;AS_VarDP=25|29|0;BaseQRankSum=0.331;DP=55;MQRankSum=-1.617;QUALapprox=776;RAW_GT_COUNT=0,1,0;RAW_MQandDP=195374,55;ReadPosRankSum=-0.660;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:25,29,0:54:99:776,0,636,851,724,1574:12,13,12,17 +chrX 2839714 . T . . END=2839741 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 2839742 . G A, 697.64 . AS_QUALapprox=|705|0;AS_VarDP=31|27|0;BaseQRankSum=0.691;DP=58;MQRankSum=0.000;QUALapprox=705;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-2.028;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:31,27,0:58:99:705,0,834,798,914,1713:12,19,14,13 +chrX 2839743 . A . . END=2841003 GT:DP:GQ:MIN_DP:PL 0/0:53:56:53:0,56,1156 +chrX 2841004 . TATAG T, 1898.03 . AS_QUALapprox=|1912|0;AS_VarDP=0|43|0;DP=47;QUALapprox=1912;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;VarDP=43 GT:AD:DP:GQ:PL:SB 1/1:0,43,0:43:99:1912,130,0,1912,130,1912:0,0,21,22 +chrX 2841009 . A . . END=2841363 GT:DP:GQ:MIN_DP:PL 0/0:52:69:52:0,69,1308 +chrX 2841364 . TGATA T, 945.60 . AS_QUALapprox=|953|0;AS_VarDP=29|25|0;BaseQRankSum=1.921;DP=60;MQRankSum=0.000;QUALapprox=953;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=-0.581;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:29,25,0:54:99:953,0,1142,1041,1218,2258:16,13,12,13 +chrX 2841369 . G . . END=2841573 GT:DP:GQ:MIN_DP:PL 0/0:64:83:64:0,83,1715 +chrX 2841574 . C G, 691.64 . AS_QUALapprox=|699|0;AS_VarDP=34|26|0;BaseQRankSum=1.797;DP=61;MQRankSum=0.000;QUALapprox=699;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=1.172;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:34,26,0:60:99:699,0,931,801,1009,1810:16,18,13,13 +chrX 2841575 . G . . END=2842018 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,103,1396 +chrX 2842019 . T C, 554.64 . AS_QUALapprox=|562|0;AS_VarDP=25|21|0;BaseQRankSum=0.230;DP=47;MQRankSum=0.000;QUALapprox=562;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=0.044;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:25,21,0:46:99:562,0,675,636,738,1374:12,13,12,9 +chrX 2842020 . T . . END=2842184 GT:DP:GQ:MIN_DP:PL 0/0:52:55:52:0,55,1422 +chrX 2842185 . C CTTTCTTT, 689.60 . AS_QUALapprox=|697|0;AS_VarDP=22|20|0;BaseQRankSum=2.035;DP=55;MQRankSum=0.000;QUALapprox=697;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-2.558;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:22,20,0:42:99:697,0,798,764,858,1622:10,12,10,10 +chrX 2842186 . T . . END=2842252 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,106,1454 +chrX 2842253 . A G, 742.64 . AS_QUALapprox=|750|0;AS_VarDP=28|28|0;BaseQRankSum=0.927;DP=57;MQRankSum=0.000;QUALapprox=750;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-0.713;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:28,28,0:56:99:750,0,735,834,819,1653:15,13,18,10 +chrX 2842254 . G . . END=2842448 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,116,1663 +chrX 2842449 . G A, 1076.64 . AS_QUALapprox=|1084|0;AS_VarDP=27|28|0;BaseQRankSum=0.637;DP=55;MQRankSum=-0.946;QUALapprox=1084;RAW_GT_COUNT=0,1,0;RAW_MQandDP=197425,55;ReadPosRankSum=-1.143;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,28,0:55:99:0|1:2842449_G_A:1084,0,982,1165,1066,2231:2842449:17,10,12,16 +chrX 2842450 . A . . END=2842457 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 2842458 . A G, 1107.64 . AS_QUALapprox=|1115|0;AS_VarDP=27|29|0;BaseQRankSum=-0.329;DP=58;MQRankSum=-0.929;QUALapprox=1115;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208225,58;ReadPosRankSum=-0.730;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,29,0:56:99:0|1:2842449_G_A:1115,0,1005,1196,1092,2289:2842449:18,9,12,17 +chrX 2842459 . C . . END=2842742 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 2842743 . GTGTTT G, 1114.60 . AS_QUALapprox=|1122|0;AS_VarDP=32|29|0;BaseQRankSum=0.845;DP=70;MQRankSum=0.000;QUALapprox=1122;RAW_GT_COUNT=0,1,0;RAW_MQandDP=252000,70;ReadPosRankSum=-0.267;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:32,29,0:61:99:1122,0,1256,1218,1344,2562:10,22,13,16 +chrX 2842749 . T . . END=2842815 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 2842816 . A AT, 308.60 . AS_QUALapprox=|316|0;AS_VarDP=18|19|0;BaseQRankSum=2.981;DP=53;MQRankSum=0.000;QUALapprox=316;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=0.836;VarDP=37 GT:AD:DP:GQ:PL:SB 0/1:18,19,0:37:99:316,0,313,370,370,740:8,10,10,9 +chrX 2842817 . T . . END=2842934 GT:DP:GQ:MIN_DP:PL 0/0:48:31:41:0,31,1121 +chrX 2842935 . T G, 435.64 . AS_QUALapprox=|443|0;AS_VarDP=18|18|0;BaseQRankSum=-1.176;DP=39;MQRankSum=0.000;QUALapprox=443;RAW_GT_COUNT=0,1,0;RAW_MQandDP=140400,39;ReadPosRankSum=-0.412;VarDP=36 GT:AD:DP:GQ:PL:SB 0/1:18,18,0:36:99:443,0,488,497,542,1038:6,12,8,10 +chrX 2842936 . C . . END=2843682 GT:DP:GQ:MIN_DP:PL 0/0:59:75:59:0,75,1013 +chrX 2843683 . A G, 616.64 . AS_QUALapprox=|624|0;AS_VarDP=38|27|0;BaseQRankSum=-1.401;DP=67;MQRankSum=0.000;QUALapprox=624;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=0.539;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:38,27,0:65:99:624,0,1041,738,1121,1859:19,19,12,15 +chrX 2843684 . C . . END=2843875 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,109,1438 +chrX 2843876 . A G, 964.64 . AS_QUALapprox=|972|0;AS_VarDP=36|39|0;BaseQRankSum=-1.742;DP=79;MQRankSum=0.000;QUALapprox=972;RAW_GT_COUNT=0,1,0;RAW_MQandDP=284400,79;ReadPosRankSum=0.149;VarDP=75 GT:AD:DP:GQ:PL:SB 0/1:36,39,0:75:99:972,0,933,1079,1049,2127:18,18,23,16 +chrX 2843877 . C . . END=2844136 GT:DP:GQ:MIN_DP:PL 0/0:74:99:74:0,120,1800 +chrX 2844137 . G A, 1018.64 . AS_QUALapprox=|1026|0;AS_VarDP=32|38|0;BaseQRankSum=1.016;DP=71;MQRankSum=-1.596;QUALapprox=1026;RAW_GT_COUNT=0,1,0;RAW_MQandDP=252961,71;ReadPosRankSum=-0.265;VarDP=70 GT:AD:DP:GQ:PL:SB 0/1:32,38,0:70:99:1026,0,781,1122,895,2017:10,22,21,17 +chrX 2844138 . A . . END=2844365 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,100,1404 +chrX 2844366 . C G, 919.64 . AS_QUALapprox=|927|0;AS_VarDP=20|35|0;BaseQRankSum=-0.800;DP=56;MQRankSum=0.000;QUALapprox=927;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=0.972;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:20,35,0:55:99:927,0,475,986,580,1567:6,14,16,19 +chrX 2844367 . T . . END=2844523 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,101,1240 +chrX 2844524 . G . . END=2844524 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,9 +chrX 2844525 . C . . END=2844530 GT:DP:GQ:MIN_DP:PL 0/0:41:60:41:0,60,900 +chrX 2844531 . T . . END=2844532 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,243 +chrX 2844533 . T . . END=2844553 GT:DP:GQ:MIN_DP:PL 0/0:37:51:37:0,51,765 +chrX 2844554 . A . . END=2844555 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,0 +chrX 2844556 . G . . END=2844579 GT:DP:GQ:MIN_DP:PL 0/0:21:24:18:0,24,495 +chrX 2844580 . A . . END=2844581 GT:DP:GQ:MIN_DP:PL 0/0:17:0:17:0,0,78 +chrX 2844582 . G . . END=2844597 GT:DP:GQ:MIN_DP:PL 0/0:17:21:14:0,21,315 +chrX 2844598 . G . . END=2844614 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,135 +chrX 2844615 . T . . END=2844615 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,213 +chrX 2844616 . G . . END=2844649 GT:DP:GQ:MIN_DP:PL 0/0:7:0:7:0,0,15 +chrX 2844650 . G . . END=2844651 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,315 +chrX 2844652 . A . . END=2844652 GT:DP:GQ:MIN_DP:PL 0/0:10:0:10:0,0,278 +chrX 2844653 . C . . END=2844655 GT:DP:GQ:MIN_DP:PL 0/0:10:24:10:0,24,278 +chrX 2844656 . G . . END=2844659 GT:DP:GQ:MIN_DP:PL 0/0:10:0:10:0,0,0 +chrX 2844660 . G . . END=2844660 GT:DP:GQ:MIN_DP:PL 0/0:10:27:10:0,27,405 +chrX 2844661 . C . . END=2844662 GT:DP:GQ:MIN_DP:PL 0/0:10:0:10:0,0,278 +chrX 2844663 . T . . END=2844665 GT:DP:GQ:MIN_DP:PL 0/0:12:22:12:0,22,358 +chrX 2844666 . A . . END=2844666 GT:DP:GQ:MIN_DP:PL 0/0:12:1:12:0,1,348 +chrX 2844667 . T . . END=2844706 GT:DP:GQ:MIN_DP:PL 0/0:18:29:14:0,29,446 +chrX 2844707 . C . . END=2844708 GT:DP:GQ:MIN_DP:PL 0/0:26:0:26:0,0,5 +chrX 2844709 . C . . END=2844726 GT:DP:GQ:MIN_DP:PL 0/0:30:50:30:0,50,749 +chrX 2844727 . C . . END=2844727 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,55 +chrX 2844728 . G . . END=2844734 GT:DP:GQ:MIN_DP:PL 0/0:32:87:32:0,87,958 +chrX 2844735 . C . . END=2844735 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,154 +chrX 2844736 . A . . END=2844754 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,102,1091 +chrX 2844755 . C . . END=2844755 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,0 +chrX 2844756 . A . . END=2844782 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 2844783 . C . . END=2844785 GT:DP:GQ:MIN_DP:PL 0/0:55:0:55:0,0,0 +chrX 2844786 . A . . END=2844787 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,99,1587 +chrX 2844788 . A . . END=2844788 GT:DP:GQ:MIN_DP:PL 0/0:57:0:57:0,0,272 +chrX 2844789 . T . . END=2845038 GT:DP:GQ:MIN_DP:PL 0/0:57:38:47:0,38,1257 +chrX 2845039 . A . . END=2845039 GT:DP:GQ:MIN_DP:PL 0/0:56:0:56:0,0,863 +chrX 2845040 . T . . END=2845058 GT:DP:GQ:MIN_DP:PL 0/0:55:26:50:0,26,675 +chrX 2845059 . G A, 911.06 . AS_QUALapprox=|925|0;AS_VarDP=0|21|0;DP=22;QUALapprox=925;RAW_GT_COUNT=0,0,1;RAW_MQandDP=66259,22;VarDP=21 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,21,0:21:63:0|1:2845059_G_A:925,63,0,925,63,925:2845059:0,0,10,11 +chrX 2845060 . T . . END=2845082 GT:DP:GQ:MIN_DP:PL 0/0:20:32:19:0,32,466 +chrX 2845083 . G A, 1163.06 . AS_QUALapprox=|1170|0;AS_VarDP=2|28|0;BaseQRankSum=-0.884;DP=31;MQRankSum=0.872;QUALapprox=1170;RAW_GT_COUNT=0,1,0;RAW_MQandDP=89169,31;ReadPosRankSum=-1.124;VarDP=30 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:2,28,0:30:0:0|1:2845059_G_A:1170,0,0,1176,84,1260:2845059:0,2,13,15 +chrX 2845084 . T . . END=2845106 GT:DP:GQ:MIN_DP:PL 0/0:25:63:25:0,63,680 +chrX 2845107 . G A, 1164.64 . AS_QUALapprox=|1172|0;AS_VarDP=9|29|0;BaseQRankSum=0.225;DP=39;MQRankSum=-0.397;QUALapprox=1172;RAW_GT_COUNT=0,1,0;RAW_MQandDP=108671,39;ReadPosRankSum=-0.740;VarDP=38 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:9,29,0:38:99:0|1:2845059_G_A:1172,0,291,1199,378,1577:2845059:3,6,11,18 +chrX 2845108 . T . . END=2845130 GT:DP:GQ:MIN_DP:PL 0/0:38:55:38:0,55,1001 +chrX 2845131 . G A, 1068.64 . AS_QUALapprox=|1076|0;AS_VarDP=13|27|0;BaseQRankSum=0.956;DP=41;MQRankSum=-0.972;QUALapprox=1076;RAW_GT_COUNT=0,1,0;RAW_MQandDP=118102,41;ReadPosRankSum=0.419;VarDP=40 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:13,27,0:40:99:0|1:2845059_G_A:1076,0,378,1115,459,1574:2845059:6,7,10,17 +chrX 2845132 . T . . END=2845154 GT:DP:GQ:MIN_DP:PL 0/0:39:78:39:0,78,1126 +chrX 2845155 . G A, 1020.64 . AS_QUALapprox=|1028|0;AS_VarDP=15|26|0;BaseQRankSum=0.520;DP=41;MQRankSum=-1.295;QUALapprox=1028;RAW_GT_COUNT=0,1,0;RAW_MQandDP=118102,41;ReadPosRankSum=1.540;VarDP=41 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:15,26,0:41:99:0|1:2845059_G_A:1028,0,443,1073,521,1594:2845059:6,9,10,16 +chrX 2845156 . T . . END=2845459 GT:DP:GQ:MIN_DP:PL 0/0:0:0:0:0,0,0 +chrX 2845460 . T . . END=2845461 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,233 +chrX 2845462 . T . . END=2845462 GT:DP:GQ:MIN_DP:PL 0/0:7:0:7:0,0,174 +chrX 2845463 . A . . END=2845463 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,223 +chrX 2845464 . C . . END=2845464 GT:DP:GQ:MIN_DP:PL 0/0:7:18:7:0,18,270 +chrX 2845465 . A . . END=2845465 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,243 +chrX 2845466 . C . . END=2845466 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,59 +chrX 2845467 . G . . END=2845468 GT:DP:GQ:MIN_DP:PL 0/0:10:27:9:0,27,293 +chrX 2845469 . G . . END=2845469 GT:DP:GQ:MIN_DP:PL 0/0:10:5:10:0,5,288 +chrX 2845470 . T . . END=2845484 GT:DP:GQ:MIN_DP:PL 0/0:12:21:12:0,21,348 +chrX 2845485 . A . . END=2845485 GT:DP:GQ:MIN_DP:PL 0/0:13:14:13:0,14,392 +chrX 2845486 . T . . END=2845489 GT:DP:GQ:MIN_DP:PL 0/0:13:39:13:0,39,432 +chrX 2845490 . C . . END=2845490 GT:DP:GQ:MIN_DP:PL 0/0:13:12:13:0,12,180 +chrX 2845491 . G . . END=2845537 GT:DP:GQ:MIN_DP:PL 0/0:17:20:15:0,20,442 +chrX 2845538 . C . . END=2845538 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,899 +chrX 2845539 . G . . END=2845549 GT:DP:GQ:MIN_DP:PL 0/0:39:42:39:0,42,630 +chrX 2845550 . T . . END=2845553 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,0 +chrX 2845554 . T . . END=2845566 GT:DP:GQ:MIN_DP:PL 0/0:40:85:40:0,85,1131 +chrX 2845567 . G . . END=2845567 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,0 +chrX 2845568 . T . . END=2845574 GT:DP:GQ:MIN_DP:PL 0/0:40:72:40:0,72,1080 +chrX 2845575 . A . . END=2845578 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,273 +chrX 2845579 . G . . END=2845580 GT:DP:GQ:MIN_DP:PL 0/0:41:63:41:0,63,1165 +chrX 2845581 . A . . END=2845581 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,376 +chrX 2845582 . T . . END=2845596 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,107,1269 +chrX 2845597 . A . . END=2845597 GT:DP:GQ:MIN_DP:PL 0/0:33:12:33:0,12,873 +chrX 2845598 . T . . END=2845642 GT:DP:GQ:MIN_DP:PL 0/0:44:96:44:0,96,1215 +chrX 2845643 . A . . END=2845643 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,0 +chrX 2845644 . C . . END=2845987 GT:DP:GQ:MIN_DP:PL 0/0:33:32:32:0,32,873 +chrX 2845988 . C . . END=2845988 GT:DP:GQ:MIN_DP:PL 0/0:31:19:31:0,19,839 +chrX 2845989 . A . . END=2845994 GT:DP:GQ:MIN_DP:PL 0/0:32:84:32:0,84,1260 +chrX 2845995 . G GTA, 348.60 . AS_QUALapprox=|356|0;AS_VarDP=13|11|0;BaseQRankSum=1.389;DP=26;MQRankSum=1.713;QUALapprox=356;RAW_GT_COUNT=0,1,0;RAW_MQandDP=90974,26;ReadPosRankSum=-0.957;VarDP=24 GT:AD:DP:GQ:PL:SB 0/1:13,11,0:24:99:356,0,436,395,469,864:5,8,2,9 +chrX 2845996 . T . . END=2846035 GT:DP:GQ:MIN_DP:PL 0/0:24:48:24:0,48,710 +chrX 2846036 . C CATATATATATATAT, 246.60 . AS_QUALapprox=|254|0;AS_VarDP=8|7|0;BaseQRankSum=0.045;DP=23;MQRankSum=-1.769;QUALapprox=254;RAW_GT_COUNT=0,1,0;RAW_MQandDP=80174,23;ReadPosRankSum=-0.000;VarDP=15 GT:AD:DP:GQ:PL:SB 0/1:8,7,0:15:99:254,0,317,280,338,618:3,5,2,5 +chrX 2846037 . A . . END=2846054 GT:DP:GQ:MIN_DP:PL 0/0:18:24:18:0,24,360 +chrX 2846055 . ATTTTTTTTTTTTTTTT A, 188.60 . AS_QUALapprox=|196|0;AS_VarDP=5|6|0;BaseQRankSum=0.366;DP=19;MQRankSum=2.429;QUALapprox=196;RAW_GT_COUNT=0,1,0;RAW_MQandDP=64674,19;ReadPosRankSum=0.204;VarDP=11 GT:AD:DP:GQ:PL:SB 0/1:5,6,0:11:99:196,0,191,211,210,421:2,3,2,4 +chrX 2846072 . T . . END=2846072 GT:DP:GQ:MIN_DP:PL 0/0:9:18:9:0,18,270 +chrX 2846073 . T . . END=2846127 GT:DP:GQ:MIN_DP:PL 0/0:15:20:11:0,20,315 +chrX 2846128 . G A, 340.64 . AS_QUALapprox=|348|0;AS_VarDP=11|12|0;BaseQRankSum=2.287;DP=24;MQRankSum=1.132;QUALapprox=348;RAW_GT_COUNT=0,1,0;RAW_MQandDP=85300,24;ReadPosRankSum=2.095;VarDP=23 GT:AD:DP:GQ:PL:SB 0/1:11,12,0:23:99:348,0,258,381,294,675:5,6,6,6 +chrX 2846129 . C . . END=2846634 GT:DP:GQ:MIN_DP:PL 0/0:48:48:48:0,48,759 +chrX 2846635 . G C, 684.64 . AS_QUALapprox=|692|0;AS_VarDP=18|26|0;BaseQRankSum=-0.675;DP=49;MQRankSum=0.000;QUALapprox=692;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=0.633;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:18,26,0:44:99:692,0,460,746,537,1283:10,8,10,16 +chrX 2846636 . T . . END=2846846 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,113,1429 +chrX 2846847 . A G, 1011.64 . AS_QUALapprox=|1019|0;AS_VarDP=28|39|0;BaseQRankSum=-0.248;DP=70;MQRankSum=0.000;QUALapprox=1019;RAW_GT_COUNT=0,1,0;RAW_MQandDP=252000,70;ReadPosRankSum=3.001;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:28,39,0:67:99:1019,0,691,1103,807,1911:18,10,23,16 +chrX 2846848 . A . . END=2847277 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,115,1800 +chrX 2847278 . A C, 701.64 . AS_QUALapprox=|709|0;AS_VarDP=27|26|0;BaseQRankSum=1.389;DP=54;MQRankSum=-0.981;QUALapprox=709;RAW_GT_COUNT=0,1,0;RAW_MQandDP=192564,54;ReadPosRankSum=-0.098;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:27,26,0:53:99:709,0,719,791,797,1587:16,11,14,12 +chrX 2847279 . C . . END=2847328 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,104,1520 +chrX 2847329 . A T, 553.64 . AS_QUALapprox=|561|0;AS_VarDP=27|21|0;BaseQRankSum=0.737;DP=50;MQRankSum=0.000;QUALapprox=561;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=0.177;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:27,21,0:48:99:561,0,765,642,827,1469:16,11,14,7 +chrX 2847330 . C . . END=2847524 GT:DP:GQ:MIN_DP:PL 0/0:45:29:41:0,29,1136 +chrX 2847525 . T . . END=2847525 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,938 +chrX 2847526 . A . . END=2847530 GT:DP:GQ:MIN_DP:PL 0/0:38:21:35:0,21,968 +chrX 2847531 . T . . END=2847532 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,735 +chrX 2847533 . CA C,CAA, 143.02 . AS_QUALapprox=|89|77|0;AS_VarDP=3|7|7|0;BaseQRankSum=2.266;DP=36;MQRankSum=-0.309;QUALapprox=160;RAW_GT_COUNT=0,0,1;RAW_MQandDP=127364,36;ReadPosRankSum=-1.386;VarDP=17 GT:AD:DP:GQ:PL:SB 1/2:3,7,7,0:17:71:160,71,170,83,0,159,197,161,162,297:1,2,7,7 +chrX 2847535 . A . . END=2847702 GT:DP:GQ:MIN_DP:PL 0/0:55:56:55:0,56,990 +chrX 2847703 . A AAAAT, 497.60 . AS_QUALapprox=|505|0;AS_VarDP=23|14|0;BaseQRankSum=-0.335;DP=58;MQRankSum=0.000;QUALapprox=505;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=1.281;VarDP=37 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,14,0:37:99:0|1:2847703_A_AAAAT:505,0,843,576,886,1461:2847703:8,15,8,6 +chrX 2847704 . A . . END=2847714 GT:DP:GQ:MIN_DP:PL 0/0:54:87:54:0,87,1305 +chrX 2847715 . TAA T, 941.60 . AS_QUALapprox=|949|0;AS_VarDP=27|29|0;BaseQRankSum=-0.589;DP=60;MQRankSum=0.000;QUALapprox=949;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=-0.796;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:27,29,0:56:99:1|0:2847703_A_AAAAT:949,0,942,1030,1029,2059:2847703:16,11,11,18 +chrX 2847718 . A . . END=2847718 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 2847719 . TAAATAA T, 941.60 . AS_QUALapprox=|949|0;AS_VarDP=27|29|0;BaseQRankSum=-0.891;DP=57;MQRankSum=0.000;QUALapprox=949;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-0.169;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:27,29,0:56:99:1|0:2847703_A_AAAAT:949,0,942,1030,1029,2059:2847703:16,11,11,18 +chrX 2847726 . A . . END=2848311 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 2848312 . A G, 2407.06 . AS_QUALapprox=|2421|0;AS_VarDP=0|73|0;DP=76;QUALapprox=2421;RAW_GT_COUNT=0,0,1;RAW_MQandDP=269757,76;VarDP=73 GT:AD:DP:GQ:PL:SB 1/1:0,73,0:73:99:2421,218,0,2421,218,2421:0,0,36,37 +chrX 2848313 . C . . END=2848358 GT:DP:GQ:MIN_DP:PL 0/0:73:99:73:0,120,1800 +chrX 2848359 . T G, 1059.64 . AS_QUALapprox=|1067|0;AS_VarDP=33|38|0;BaseQRankSum=0.590;DP=73;MQRankSum=-0.904;QUALapprox=1067;RAW_GT_COUNT=0,1,0;RAW_MQandDP=262116,73;ReadPosRankSum=0.559;VarDP=71 GT:AD:DP:GQ:PL:SB 0/1:33,38,0:71:99:1067,0,882,1166,997,2162:16,17,17,21 +chrX 2848360 . G . . END=2848497 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 2848498 . AC A, 745.60 . AS_QUALapprox=|753|0;AS_VarDP=29|20|0;BaseQRankSum=0.847;DP=51;MQRankSum=0.000;QUALapprox=753;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=1.140;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,20,0:49:99:0|1:2848498_AC_A:753,0,1140,840,1200,2040:2848498:14,15,13,7 +chrX 2848500 . C . . END=2848503 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 2848504 . A C, 766.64 . AS_QUALapprox=|774|0;AS_VarDP=29|21|0;BaseQRankSum=0.017;DP=51;MQRankSum=0.000;QUALapprox=774;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=1.314;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,21,0:50:99:0|1:2848498_AC_A:774,0,1137,862,1200,2061:2848498:14,15,13,8 +chrX 2848505 . C . . END=2848546 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,108,1620 +chrX 2848547 . GA G,GAAA, 1206.02 . AS_QUALapprox=|343|770|0;AS_VarDP=0|17|25|0;DP=53;QUALapprox=1223;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=42 GT:AD:DP:GQ:PL:SB 1/2:0,17,25,0:42:99:1223,880,990,453,0,628,1306,972,595,1484:0,0,17,25 +chrX 2848549 . A . . END=2848629 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 2848630 . G C, 1015.64 . AS_QUALapprox=|1023|0;AS_VarDP=29|37|0;BaseQRankSum=0.497;DP=69;MQRankSum=0.000;QUALapprox=1023;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=0.330;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:29,37,0:66:99:1023,0,713,1109,824,1933:16,13,17,20 +chrX 2848631 . T . . END=2848978 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,114,1643 +chrX 2848979 . A T, 1415.06 . AS_QUALapprox=|1429|0;AS_VarDP=0|43|0;DP=44;QUALapprox=1429;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158400,44;VarDP=43 GT:AD:DP:GQ:PL:SB 1/1:0,43,0:43:99:1429,129,0,1429,129,1429:0,0,24,19 +chrX 2848980 . C . . END=2849144 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,106,1386 +chrX 2849145 . T C, 831.64 . AS_QUALapprox=|839|0;AS_VarDP=32|32|0;BaseQRankSum=-1.633;DP=65;MQRankSum=0.000;QUALapprox=839;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=0.262;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:32,32,0:64:99:839,0,890,935,986,1921:16,16,15,17 +chrX 2849146 . G . . END=2849188 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 2849189 . T C, 867.64 . AS_QUALapprox=|875|0;AS_VarDP=30|34|0;BaseQRankSum=-1.479;DP=65;MQRankSum=0.000;QUALapprox=875;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=-0.868;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:30,34,0:64:99:875,0,796,965,897,1862:14,16,15,19 +chrX 2849190 . G . . END=2849330 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 2849331 . G A, 835.64 . AS_QUALapprox=|843|0;AS_VarDP=37|23|0;BaseQRankSum=1.615;DP=61;MQRankSum=0.000;QUALapprox=843;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-0.628;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:37,23,0:60:99:0|1:2849331_G_A:843,0,1464,955,1533,2488:2849331:18,19,12,11 +chrX 2849332 . T . . END=2849343 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 2849344 . C T, 849.64 . AS_QUALapprox=|857|0;AS_VarDP=43|24|0;BaseQRankSum=1.282;DP=68;MQRankSum=0.000;QUALapprox=857;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=0.360;VarDP=67 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:43,24,0:67:99:0|1:2849331_G_A:857,0,1641,987,1713,2700:2849331:20,23,13,11 +chrX 2849345 . A . . END=2850569 GT:DP:GQ:MIN_DP:PL 0/0:60:63:60:0,63,1305 +chrX 2850570 . C G, 667.64 . AS_QUALapprox=|675|0;AS_VarDP=34|27|0;BaseQRankSum=-0.524;DP=63;MQRankSum=0.921;QUALapprox=675;RAW_GT_COUNT=0,1,0;RAW_MQandDP=195448,63;ReadPosRankSum=1.721;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:34,27,0:61:99:675,0,917,777,998,1776:17,17,10,17 +chrX 2850571 . C . . END=2850594 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 2850595 . G A, 2187.06 . AS_QUALapprox=|2201|0;AS_VarDP=0|58|0;DP=59;QUALapprox=2201;RAW_GT_COUNT=0,0,1;RAW_MQandDP=173048,59;VarDP=58 GT:AD:DP:GQ:PL:SB 1/1:0,58,0:58:99:2201,174,0,2201,174,2201:0,0,28,30 +chrX 2850596 . G . . END=2850671 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 2850672 . T C, 635.64 . AS_QUALapprox=|643|0;AS_VarDP=41|27|0;BaseQRankSum=-1.192;DP=69;MQRankSum=-0.044;QUALapprox=643;RAW_GT_COUNT=0,1,0;RAW_MQandDP=203297,69;ReadPosRankSum=0.658;VarDP=68 GT:AD:DP:GQ:PL:SB 0/1:41,27,0:68:99:643,0,1125,766,1206,1972:21,20,15,12 +chrX 2850673 . C . . END=2850809 GT:DP:GQ:MIN_DP:PL 0/0:56:98:56:0,98,1368 +chrX 2850810 . C T, 769.64 . AS_QUALapprox=|777|0;AS_VarDP=20|23|0;BaseQRankSum=-1.581;DP=44;MQRankSum=1.960;QUALapprox=777;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154663,44;ReadPosRankSum=0.454;VarDP=43 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:20,23,0:43:99:0|1:2850810_C_T:777,0,759,837,828,1665:2850810:15,5,11,12 +chrX 2850811 . G . . END=2850822 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,114,1230 +chrX 2850823 . A G, 773.64 . AS_QUALapprox=|781|0;AS_VarDP=22|23|0;BaseQRankSum=-1.388;DP=47;MQRankSum=1.825;QUALapprox=781;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165463,47;ReadPosRankSum=0.216;VarDP=45 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,23,0:45:99:0|1:2850810_C_T:781,0,813,847,882,1729:2850810:16,6,10,13 +chrX 2850824 . T . . END=2850867 GT:DP:GQ:MIN_DP:PL 0/0:47:96:47:0,96,1363 +chrX 2850868 . T C, 1690.06 . AS_QUALapprox=|1704|0;AS_VarDP=0|50|0;DP=51;QUALapprox=1704;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180547,51;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1704,150,0,1704,150,1704:0,0,32,18 +chrX 2850869 . A . . END=2851061 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 2851062 . A T, 966.64 . AS_QUALapprox=|974|0;AS_VarDP=30|36|0;BaseQRankSum=0.924;DP=70;MQRankSum=0.730;QUALapprox=974;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241192,70;ReadPosRankSum=0.309;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:30,36,0:66:99:974,0,761,1064,869,1934:18,12,15,21 +chrX 2851063 . A . . END=2851292 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 2851293 . C T, 2060.06 . AS_QUALapprox=|2074|0;AS_VarDP=0|62|0;DP=65;QUALapprox=2074;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:0,62,0:62:99:2074,186,0,2074,186,2074:0,0,33,29 +chrX 2851294 . G . . END=2853272 GT:DP:GQ:MIN_DP:PL 0/0:64:86:64:0,86,1247 +chrX 2853273 . C T, 2014.06 . AS_QUALapprox=|2028|0;AS_VarDP=0|60|0;DP=61;QUALapprox=2028;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:2028,180,0,2028,180,2028:0,0,36,24 +chrX 2853274 . G . . END=2854233 GT:DP:GQ:MIN_DP:PL 0/0:57:91:57:0,91,1346 +chrX 2854234 . G T, 565.64 . AS_QUALapprox=|573|0;AS_VarDP=28|22|0;BaseQRankSum=0.909;DP=55;MQRankSum=0.000;QUALapprox=573;RAW_GT_COUNT=0,1,0;RAW_MQandDP=195076,55;ReadPosRankSum=0.762;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:28,22,0:50:99:573,0,721,657,787,1444:18,10,11,11 +chrX 2854235 . T . . END=2854356 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,118,1505 +chrX 2854357 . T G, 1805.06 . AS_QUALapprox=|1819|0;AS_VarDP=0|61|0;DP=63;QUALapprox=1819;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223876,63;VarDP=61 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:1819,181,0,1819,181,1819:0,0,32,29 +chrX 2854358 . A . . END=2854618 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 2854619 . G A, 1309.64 . AS_QUALapprox=|1317|0;AS_VarDP=16|43|0;BaseQRankSum=4.217;DP=63;MQRankSum=0.000;QUALapprox=1317;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=0.580;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:16,43,0:59:99:1317,0,319,1365,448,1813:8,8,22,21 +chrX 2854620 . C . . END=2854652 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 2854653 . A G, 1216.64 . AS_QUALapprox=|1224|0;AS_VarDP=15|42|0;BaseQRankSum=2.275;DP=57;MQRankSum=0.000;QUALapprox=1224;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-2.103;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:15,42,0:57:99:1224,0,290,1269,416,1685:6,9,23,19 +chrX 2854654 . C . . END=2854730 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,108,1525 +chrX 2854731 . T C, 425.64 . AS_QUALapprox=|433|0;AS_VarDP=30|19|0;BaseQRankSum=-1.528;DP=53;MQRankSum=-1.215;QUALapprox=433;RAW_GT_COUNT=0,1,0;RAW_MQandDP=189409,53;ReadPosRankSum=-2.351;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:30,19,0:49:99:433,0,821,523,878,1400:15,15,10,9 +chrX 2854732 . G . . END=2854750 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,119,1499 +chrX 2854751 . C T, 1712.06 . AS_QUALapprox=|1726|0;AS_VarDP=0|48|0;DP=49;QUALapprox=1726;RAW_GT_COUNT=0,0,1;RAW_MQandDP=175009,49;VarDP=48 GT:AD:DP:GQ:PL:SB 1/1:0,48,0:48:99:1726,144,0,1726,144,1726:0,0,25,23 +chrX 2854752 . G . . END=2855479 GT:DP:GQ:MIN_DP:PL 0/0:51:71:51:0,71,1232 +chrX 2855480 . C T, 577.64 . AS_QUALapprox=|585|0;AS_VarDP=24|21|0;BaseQRankSum=0.945;DP=46;MQRankSum=0.000;QUALapprox=585;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=1.047;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:24,21,0:45:99:585,0,654,657,717,1374:12,12,9,12 +chrX 2855481 . C . . END=2855738 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,113,1368 +chrX 2855739 . A C, 430.64 . AS_QUALapprox=|438|0;AS_VarDP=32|19|0;BaseQRankSum=-1.620;DP=52;MQRankSum=0.000;QUALapprox=438;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=-1.033;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:32,19,0:51:99:438,0,940,534,996,1530:14,18,9,10 +chrX 2855740 . A . . END=2855901 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,107,1743 +chrX 2855902 . T G, 1837.06 . AS_QUALapprox=|1851|0;AS_VarDP=0|58|0;DP=59;QUALapprox=1851;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=58 GT:AD:DP:GQ:PL:SB 1/1:0,58,0:58:99:1851,174,0,1851,174,1851:0,0,25,33 +chrX 2855903 . T . . END=2856004 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,109,1401 +chrX 2856005 . A G, 1424.06 . AS_QUALapprox=|1438|0;AS_VarDP=0|46|0;DP=47;QUALapprox=1438;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1438,137,0,1438,137,1438:0,0,25,21 +chrX 2856006 . T . . END=2856436 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,99,1643 +chrX 2856437 . A G, 1673.06 . AS_QUALapprox=|1687|0;AS_VarDP=0|53|0;DP=58;QUALapprox=1687;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1687,159,0,1687,159,1687:0,0,26,27 +chrX 2856438 . T . . END=2856658 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,112,1573 +chrX 2856659 . T G, 734.64 . AS_QUALapprox=|742|0;AS_VarDP=28|29|0;BaseQRankSum=-0.909;DP=58;MQRankSum=0.000;QUALapprox=742;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=0.479;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:28,29,0:57:99:742,0,752,826,839,1665:15,13,14,15 +chrX 2856660 . G . . END=2856718 GT:DP:GQ:MIN_DP:PL 0/0:55:96:55:0,96,1472 +chrX 2856719 . CTCTA C, 206.60 . AS_QUALapprox=|214|0;AS_VarDP=25|7|0;BaseQRankSum=0.371;DP=56;MQRankSum=-1.814;QUALapprox=214;RAW_GT_COUNT=0,1,0;RAW_MQandDP=199936,56;ReadPosRankSum=-0.228;VarDP=32 GT:AD:DP:GQ:PL:SB 0/1:25,7,0:32:99:214,0,1012,289,1034,1323:8,17,4,3 +chrX 2856724 . T . . END=2856751 GT:DP:GQ:MIN_DP:PL 0/0:55:61:55:0,61,1603 +chrX 2856752 . G C,GTATCTATC, 819.64 . AS_QUALapprox=|827|0|0;AS_VarDP=11|28|0|0;BaseQRankSum=-0.238;DP=57;MQRankSum=0.694;QUALapprox=827;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201536,57;ReadPosRankSum=-0.297;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:11,28,0,0:39:99:827,0,373,905,505,2226,921,511,1875,1820:6,5,10,18 +chrX 2856753 . T . . END=2856787 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,108,1620 +chrX 2856788 . C CT, 363.60 . AS_QUALapprox=|371|0;AS_VarDP=30|11|0;BaseQRankSum=0.414;DP=57;MQRankSum=-1.596;QUALapprox=371;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201536,57;ReadPosRankSum=1.502;VarDP=41 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:30,11,0:41:99:0|1:2856788_C_CT:371,0,1227,462,1261,1722:2856788:9,21,6,5 +chrX 2856789 . A . . END=2856791 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 2856792 . T TATC, 360.60 . AS_QUALapprox=|368|0;AS_VarDP=31|11|0;BaseQRankSum=0.040;DP=58;MQRankSum=-1.625;QUALapprox=368;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205136,58;ReadPosRankSum=1.746;VarDP=42 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:31,11,0:42:99:0|1:2856788_C_CT:368,0,1260,462,1293,1755:2856788:10,21,6,5 +chrX 2856793 . A . . END=2856795 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 2856796 . T . . END=2856796 GT:DP:GQ:MIN_DP:PL 0/0:54:0:54:0,0,913 +chrX 2856797 . A . . END=2856798 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 2856799 . C CT,CATCT, 2484.03 . AS_QUALapprox=|665|2498|0;AS_VarDP=0|0|40|0;DP=59;QUALapprox=2498;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208736,59;VarDP=40 GT:AD:DP:GQ:PL:SB 2/2:0,0,40,0:40:99:2498,1838,1833,169,122,0,2194,1861,171,2167:0,0,16,24 +chrX 2856800 . A . . END=2856948 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,108,1475 +chrX 2856949 . G T, 1290.64 . AS_QUALapprox=|1298|0;AS_VarDP=22|33|0;BaseQRankSum=-0.680;DP=56;MQRankSum=-0.779;QUALapprox=1298;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198529,56;ReadPosRankSum=0.885;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,33,0:55:99:0|1:2856949_G_T:1298,0,791,1364,891,2255:2856949:15,7,16,17 +chrX 2856950 . C . . END=2856955 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 2856956 . CATCTGTTTATCTATCT C, 1414.60 . AS_QUALapprox=|1422|0;AS_VarDP=22|36|0;BaseQRankSum=0.161;DP=61;MQRankSum=-0.746;QUALapprox=1422;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216529,61;ReadPosRankSum=0.466;VarDP=58 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,36,0:58:99:0|1:2856949_G_T:1422,0,794,1488,903,2391:2856949:14,8,17,19 +chrX 2856963 . TTATCTATCTATC *,T, 650.01 . AS_QUALapprox=|0|655|0;AS_VarDP=0|35|16|0;DP=60;QUALapprox=2099;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212929,60;VarDP=51 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 2|1:0,35,16,0:51:99:1|0:2856949_G_T:2099,660,759,1444,0,1448,2122,776,1487,2240:2856949:0,0,28,23 +chrX 2856976 . T . . END=2857169 GT:DP:GQ:MIN_DP:PL 0/0:60:24:59:0,24,1537 +chrX 2857170 . G A, 1221.64 . AS_QUALapprox=|1229|0;AS_VarDP=26|33|0;BaseQRankSum=-1.997;DP=59;MQRankSum=0.000;QUALapprox=1229;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=2.670;VarDP=59 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,33,0:59:99:0|1:2857170_G_A:1229,0,879,1307,977,2284:2857170:11,15,18,15 +chrX 2857171 . T . . END=2857217 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 2857218 . G A, 1507.64 . AS_QUALapprox=|1515|0;AS_VarDP=34|46|0;BaseQRankSum=-1.384;DP=81;MQRankSum=0.000;QUALapprox=1515;RAW_GT_COUNT=0,1,0;RAW_MQandDP=291600,81;ReadPosRankSum=-0.394;VarDP=80 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:34,46,0:80:99:0|1:2857170_G_A:1515,0,1054,1617,1189,2806:2857170:14,20,21,25 +chrX 2857219 . T . . END=2857288 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 2857289 . CT C, 984.60 . AS_QUALapprox=|992|0;AS_VarDP=37|27|0;BaseQRankSum=1.066;DP=64;MQRankSum=0.000;QUALapprox=992;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=0.236;VarDP=64 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:37,27,0:64:99:0|1:2857289_CT_C:992,0,1434,1103,1516,2619:2857289:18,19,9,18 +chrX 2857291 . T . . END=2857314 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 2857315 . C A, 1078.64 . AS_QUALapprox=|1086|0;AS_VarDP=34|30|0;BaseQRankSum=2.078;DP=64;MQRankSum=0.000;QUALapprox=1086;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=-1.420;VarDP=64 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:34,30,0:64:99:0|1:2857289_CT_C:1086,0,1317,1188,1407,2595:2857289:16,18,12,18 +chrX 2857316 . A . . END=2857404 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 2857405 . G . . END=2857405 GT:DP:GQ:MIN_DP:PL 0/0:63:0:63:0,0,1591 +chrX 2857406 . A ATATC, 2816.03 . AS_QUALapprox=|2830|0;AS_VarDP=0|64|0;DP=66;QUALapprox=2830;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=64 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:2830,193,0,2830,193,2830:0,0,30,34 +chrX 2857407 . T . . END=2857559 GT:DP:GQ:MIN_DP:PL 0/0:65:31:55:0,31,1459 +chrX 2857560 . A G, 690.64 . AS_QUALapprox=|698|0;AS_VarDP=32|28|0;BaseQRankSum=-0.114;DP=60;MQRankSum=0.000;QUALapprox=698;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=-0.971;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:32,28,0:60:99:698,0,842,794,926,1720:16,16,14,14 +chrX 2857561 . T . . END=2857649 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 2857650 . G C, 821.64 . AS_QUALapprox=|829|0;AS_VarDP=37|34|0;BaseQRankSum=-2.581;DP=75;MQRankSum=0.000;QUALapprox=829;RAW_GT_COUNT=0,1,0;RAW_MQandDP=270000,75;ReadPosRankSum=-0.881;VarDP=71 GT:AD:DP:GQ:PL:SB 0/1:37,34,0:71:99:829,0,1044,940,1145,2085:18,19,15,19 +chrX 2857651 . T . . END=2857834 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 2857835 . A G, 643.64 . AS_QUALapprox=|651|0;AS_VarDP=27|24|0;BaseQRankSum=-0.084;DP=52;MQRankSum=0.000;QUALapprox=651;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=0.548;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:27,24,0:51:99:651,0,740,732,813,1545:13,14,10,14 +chrX 2857836 . C . . END=2857956 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 2857957 . A T, 916.64 . AS_QUALapprox=|924|0;AS_VarDP=29|35|0;BaseQRankSum=-0.710;DP=68;MQRankSum=0.000;QUALapprox=924;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=0.864;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:29,35,0:64:99:924,0,755,1011,860,1871:17,12,15,20 +chrX 2857958 . T . . END=2858085 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 2858086 . A AT, 612.60 . AS_QUALapprox=|620|0;AS_VarDP=45|29|0;BaseQRankSum=-0.449;DP=79;MQRankSum=0.000;QUALapprox=620;RAW_GT_COUNT=0,1,0;RAW_MQandDP=284400,79;ReadPosRankSum=0.404;VarDP=74 GT:AD:DP:GQ:PL:SB 0/1:45,29,0:74:99:620,0,1123,755,1210,1965:30,15,16,13 +chrX 2858087 . T . . END=2858111 GT:DP:GQ:MIN_DP:PL 0/0:77:99:77:0,120,1800 +chrX 2858112 . T C, 806.64 . AS_QUALapprox=|814|0;AS_VarDP=43|33|0;BaseQRankSum=-1.402;DP=79;MQRankSum=0.000;QUALapprox=814;RAW_GT_COUNT=0,1,0;RAW_MQandDP=284400,79;ReadPosRankSum=0.372;VarDP=76 GT:AD:DP:GQ:PL:SB 0/1:43,33,0:76:99:814,0,1192,943,1291,2233:29,14,22,11 +chrX 2858113 . G . . END=2858276 GT:DP:GQ:MIN_DP:PL 0/0:80:99:80:0,120,1800 +chrX 2858277 . AT A, 1064.60 . AS_QUALapprox=|1072|0;AS_VarDP=29|31|0;BaseQRankSum=0.556;DP=63;MQRankSum=0.000;QUALapprox=1072;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=-0.777;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:29,31,0:60:99:1072,0,990,1160,1083,2243:8,21,16,15 +chrX 2858279 . G . . END=2858330 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 2858331 . T C, 753.64 . AS_QUALapprox=|761|0;AS_VarDP=31|31|0;BaseQRankSum=-0.960;DP=63;MQRankSum=0.000;QUALapprox=761;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=-1.007;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:31,31,0:62:99:761,0,822,854,914,1768:17,14,11,20 +chrX 2858332 . G . . END=2858644 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,109,1791 +chrX 2858645 . G T, 817.64 . AS_QUALapprox=|825|0;AS_VarDP=25|29|0;BaseQRankSum=0.172;DP=56;MQRankSum=0.000;QUALapprox=825;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-0.191;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:25,29,0:54:99:825,0,687,901,774,1675:17,8,17,12 +chrX 2858646 . A . . END=2859065 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,106,1547 +chrX 2859066 . T G, 1921.06 . AS_QUALapprox=|1935|0;AS_VarDP=0|60|0;DP=62;QUALapprox=1935;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:1935,179,0,1935,179,1935:0,0,26,34 +chrX 2859067 . A . . END=2859272 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 2859273 . A G, 2225.06 . AS_QUALapprox=|2239|0;AS_VarDP=1|52|0;BaseQRankSum=-0.644;DP=53;MQRankSum=0.000;QUALapprox=2239;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;ReadPosRankSum=0.817;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:1,52,0:53:99:0|1:2859273_A_G:2239,114,0,2242,156,2284:2859273:0,1,26,26 +chrX 2859274 . T . . END=2859278 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 2859279 . ATAG A, 2270.03 . AS_QUALapprox=|2284|0;AS_VarDP=1|53|0;BaseQRankSum=-0.489;DP=54;MQRankSum=0.000;QUALapprox=2284;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;ReadPosRankSum=1.155;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:1,53,0:54:99:0|1:2859273_A_G:2284,117,0,2287,159,2329:2859273:0,1,26,27 +chrX 2859283 . T . . END=2859313 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 2859314 . C T, 1742.06 . AS_QUALapprox=|1756|0;AS_VarDP=0|54|0;DP=56;QUALapprox=1756;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:1756,162,0,1756,162,1756:0,0,27,27 +chrX 2859315 . A . . END=2859518 GT:DP:GQ:MIN_DP:PL 0/0:52:87:52:0,87,1177 +chrX 2859519 . A G, 1842.06 . AS_QUALapprox=|1856|0;AS_VarDP=0|57|0;DP=59;QUALapprox=1856;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1856,171,0,1856,171,1856:0,0,31,26 +chrX 2859520 . T . . END=2859943 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 2859944 . C T, 2041.06 . AS_QUALapprox=|2055|0;AS_VarDP=0|62|0;DP=62;QUALapprox=2055;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:0,62,0:62:99:2055,186,0,2055,186,2055:0,0,36,26 +chrX 2859945 . G . . END=2860280 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 2860281 . G A, 2234.06 . AS_QUALapprox=|2248|0;AS_VarDP=1|71|0;BaseQRankSum=2.223;DP=72;MQRankSum=0.000;QUALapprox=2248;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;ReadPosRankSum=-1.155;VarDP=72 GT:AD:DP:GQ:PL:SB 1/1:1,71,0:72:99:2248,206,0,2250,213,2257:0,1,37,34 +chrX 2860282 . T . . END=2860391 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 2860392 . C G, 1664.06 . AS_QUALapprox=|1678|0;AS_VarDP=0|50|0;DP=52;QUALapprox=1678;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1678,150,0,1678,150,1678:0,0,19,31 +chrX 2860393 . T . . END=2860484 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,113,1459 +chrX 2860485 . A G, 2224.06 . AS_QUALapprox=|2238|0;AS_VarDP=0|52|0;DP=52;QUALapprox=2238;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,52,0:52:99:0|1:2860485_A_G:2238,157,0,2238,157,2238:2860485:0,0,24,28 +chrX 2860486 . G . . END=2860504 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 2860505 . C A, 2189.06 . AS_QUALapprox=|2203|0;AS_VarDP=0|51|0;DP=51;QUALapprox=2203;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=51 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,51,0:51:99:0|1:2860485_A_G:2203,153,0,2203,153,2203:2860485:0,0,23,28 +chrX 2860506 . G . . END=2860545 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 2860546 . A G, 1619.06 . AS_QUALapprox=|1633|0;AS_VarDP=0|51|0;DP=51;QUALapprox=1633;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1633,152,0,1633,152,1633:0,0,27,24 +chrX 2860547 . G . . END=2860642 GT:DP:GQ:MIN_DP:PL 0/0:52:54:52:0,54,1270 +chrX 2860643 . CTT C, 829.03 . AS_QUALapprox=|843|0;AS_VarDP=1|27|0;BaseQRankSum=-0.868;DP=44;MQRankSum=0.000;QUALapprox=843;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158400,44;ReadPosRankSum=0.744;VarDP=28 GT:AD:DP:GQ:PL:SB 1/1:1,27,0:28:74:843,74,0,846,82,853:1,0,10,17 +chrX 2860646 . T . . END=2860662 GT:DP:GQ:MIN_DP:PL 0/0:57:65:57:0,65,1452 +chrX 2860663 . T . . END=2860666 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1294 +chrX 2860667 . T . . END=2860754 GT:DP:GQ:MIN_DP:PL 0/0:52:62:52:0,62,1322 +chrX 2860755 . A T, 1764.06 . AS_QUALapprox=|1778|0;AS_VarDP=0|52|0;DP=52;QUALapprox=1778;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1778,156,0,1778,156,1778:0,0,33,19 +chrX 2860756 . G . . END=2860790 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 2860791 . A G, 1952.06 . AS_QUALapprox=|1966|0;AS_VarDP=0|60|0;DP=65;QUALapprox=1966;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:1966,180,0,1966,180,1966:0,0,40,20 +chrX 2860792 . T . . END=2860940 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 2860941 . G T, 2833.06 . AS_QUALapprox=|2847|0;AS_VarDP=0|66|0;DP=67;QUALapprox=2847;RAW_GT_COUNT=0,0,1;RAW_MQandDP=240100,67;VarDP=66 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,66,0:66:99:0|1:2860941_G_T:2847,199,0,2847,199,2847:2860941:0,0,37,29 +chrX 2860942 . C . . END=2860954 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 2860955 . T C, 2843.06 . AS_QUALapprox=|2857|0;AS_VarDP=0|66|0;DP=68;QUALapprox=2857;RAW_GT_COUNT=0,0,1;RAW_MQandDP=243700,68;VarDP=66 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,66,0:66:99:0|1:2860941_G_T:2857,199,0,2857,199,2857:2860941:0,0,35,31 +chrX 2860956 . C . . END=2861129 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,117,1733 +chrX 2861130 . G A, 1795.06 . AS_QUALapprox=|1809|0;AS_VarDP=1|54|0;BaseQRankSum=3.474;DP=58;MQRankSum=0.000;QUALapprox=1809;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;ReadPosRankSum=1.260;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:1,54,0:55:99:1809,155,0,1812,162,1819:0,1,24,30 +chrX 2861131 . T . . END=2861169 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 2861170 . G A, 1830.06 . AS_QUALapprox=|1844|0;AS_VarDP=0|55|0;DP=59;QUALapprox=1844;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1844,165,0,1844,165,1844:0,0,26,29 +chrX 2861171 . G . . END=2861288 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 2861289 . T C, 1779.06 . AS_QUALapprox=|1793|0;AS_VarDP=1|58|0;BaseQRankSum=1.768;DP=60;MQRankSum=0.000;QUALapprox=1793;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;ReadPosRankSum=0.209;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:1,58,0:59:99:1793,150,0,1796,171,1818:0,1,29,29 +chrX 2861290 . T . . END=2861528 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 2861529 . A G, 1971.06 . AS_QUALapprox=|1985|0;AS_VarDP=0|61|0;DP=66;QUALapprox=1985;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=61 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:1985,183,0,1985,183,1985:0,0,31,30 +chrX 2861530 . C . . END=2862077 GT:DP:GQ:MIN_DP:PL 0/0:55:60:55:0,60,1308 +chrX 2862078 . T A,TGGAA, 1899.03 . AS_QUALapprox=|483|1913|0;AS_VarDP=0|1|42|0;DP=48;QUALapprox=1913;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=43 GT:AD:DP:GQ:PL:SB 2/2:0,1,42,0:43:99:1913,1431,1430,129,130,0,1712,1466,141,1676:0,0,23,20 +chrX 2862079 . G . . END=2862223 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,107,1369 +chrX 2862224 . G A, 1789.06 . AS_QUALapprox=|1803|0;AS_VarDP=1|56|0;BaseQRankSum=2.317;DP=58;MQRankSum=0.000;QUALapprox=1803;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;ReadPosRankSum=1.034;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:1,56,0:57:99:1803,161,0,1805,168,1812:1,0,32,24 +chrX 2862225 . G . . END=2862277 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 2862278 . A C, 1820.06 . AS_QUALapprox=|1834|0;AS_VarDP=0|59|0;DP=59;QUALapprox=1834;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1834,176,0,1834,176,1834:0,0,32,27 +chrX 2862279 . C . . END=2862491 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 2862492 . C T, 1671.06 . AS_QUALapprox=|1685|0;AS_VarDP=0|52|0;DP=53;QUALapprox=1685;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1685,156,0,1685,156,1685:0,0,27,25 +chrX 2862493 . T . . END=2862705 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,110,1454 +chrX 2862706 . C T, 1643.06 . AS_QUALapprox=|1657|0;AS_VarDP=0|52|0;DP=52;QUALapprox=1657;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1657,155,0,1657,155,1657:0,0,25,27 +chrX 2862707 . G . . END=2862776 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 2862777 . G . . END=2862784 GT:DP:GQ:MIN_DP:PL 0/0:62:9:62:0,9,1662 +chrX 2862785 . C T, 2552.04 . AS_QUALapprox=|2637|0;AS_VarDP=0|59|0;DP=64;QUALapprox=2637;RAW_GT_COUNT=0,0,1;RAW_MQandDP=229104,64;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:2637,180,0,2600,179,2593:0,0,30,27 +chrX 2862786 . G . . END=2862787 GT:DP:GQ:MIN_DP:PL 0/0:63:15:63:0,15,1731 +chrX 2862788 . T A, 2558.03 . AS_QUALapprox=|2572|0;AS_VarDP=0|58|0;DP=66;QUALapprox=2572;RAW_GT_COUNT=0,0,1;RAW_MQandDP=236304,66;VarDP=58 GT:AD:DP:GQ:PL:SB 1/1:0,58,0:58:99:2572,171,0,2579,176,2606:0,0,31,27 +chrX 2862789 . G . . END=2862829 GT:DP:GQ:MIN_DP:PL 0/0:62:0:62:0,0,1478 +chrX 2862830 . G . . END=2863079 GT:DP:GQ:MIN_DP:PL 0/0:56:56:56:0,56,1349 +chrX 2863080 . CT C, 1125.03 . AS_QUALapprox=|1139|0;AS_VarDP=0|41|0;DP=54;QUALapprox=1139;RAW_GT_COUNT=0,0,1;RAW_MQandDP=193716,54;VarDP=41 GT:AD:DP:GQ:PL:SB 1/1:0,41,0:41:99:1139,123,0,1139,123,1139:0,0,23,18 +chrX 2863082 . T . . END=2863178 GT:DP:GQ:MIN_DP:PL 0/0:53:96:53:0,96,1682 +chrX 2863179 . G A, 1564.06 . AS_QUALapprox=|1578|0;AS_VarDP=0|48|0;DP=50;QUALapprox=1578;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172556,50;VarDP=48 GT:AD:DP:GQ:PL:SB 1/1:0,48,0:48:99:1578,144,0,1578,144,1578:0,0,26,22 +chrX 2863180 . T . . END=2863218 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,120,1800 +chrX 2863219 . T C, 1435.06 . AS_QUALapprox=|1449|0;AS_VarDP=0|45|0;DP=51;QUALapprox=1449;RAW_GT_COUNT=0,0,1;RAW_MQandDP=175449,51;VarDP=45 GT:AD:DP:GQ:PL:SB 1/1:0,45,0:45:99:1449,135,0,1449,135,1449:0,0,29,16 +chrX 2863220 . G . . END=2864263 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,118,1505 +chrX 2864264 . A T, 1882.06 . AS_QUALapprox=|1896|0;AS_VarDP=0|60|0;DP=64;QUALapprox=1896;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:1896,180,0,1896,180,1896:0,0,27,33 +chrX 2864265 . T . . END=2864384 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,104,1614 +chrX 2864385 . AT A, 893.03 . AS_QUALapprox=|907|0;AS_VarDP=0|35|0;DP=49;QUALapprox=907;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=35 GT:AD:DP:GQ:PL:SB 1/1:0,35,0:35:99:907,105,0,907,105,907:0,0,21,14 +chrX 2864387 . T . . END=2864413 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,106,1276 +chrX 2864414 . T C, 1240.06 . AS_QUALapprox=|1254|0;AS_VarDP=0|40|0;DP=40;QUALapprox=1254;RAW_GT_COUNT=0,0,1;RAW_MQandDP=144000,40;VarDP=40 GT:AD:DP:GQ:PL:SB 1/1:0,40,0:40:99:1254,119,0,1254,119,1254:0,0,25,15 +chrX 2864415 . C . . END=2864591 GT:DP:GQ:MIN_DP:PL 0/0:49:92:49:0,92,1205 +chrX 2864592 . G A, 1669.06 . AS_QUALapprox=|1683|0;AS_VarDP=0|49|0;DP=52;QUALapprox=1683;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1683,147,0,1683,147,1683:0,0,24,25 +chrX 2864593 . G . . END=2865065 GT:DP:GQ:MIN_DP:PL 0/0:56:26:53:0,26,1394 +chrX 2865066 . A G, 1885.06 . AS_QUALapprox=|1899|0;AS_VarDP=0|60|0;DP=60;QUALapprox=1899;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:1899,180,0,1899,180,1899:0,0,30,30 +chrX 2865067 . C . . END=2865513 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,115,1723 +chrX 2865514 . T G, 1653.06 . AS_QUALapprox=|1667|0;AS_VarDP=0|53|0;DP=54;QUALapprox=1667;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1667,158,0,1667,158,1667:0,0,30,23 +chrX 2865515 . C . . END=2865734 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,109,1529 +chrX 2865735 . T C, 1500.06 . AS_QUALapprox=|1514|0;AS_VarDP=0|46|0;DP=47;QUALapprox=1514;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1514,138,0,1514,138,1514:0,0,24,22 +chrX 2865736 . C . . END=2865873 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,115,1588 +chrX 2865874 . T TCA, 2871.03 . AS_QUALapprox=|2885|0;AS_VarDP=0|66|0;DP=71;QUALapprox=2885;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;VarDP=66 GT:AD:DP:GQ:PL:SB 1/1:0,66,0:66:99:2885,198,0,2885,199,2886:0,0,33,33 +chrX 2865875 . C . . END=2866009 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 2866010 . G A, 1995.06 . AS_QUALapprox=|2009|0;AS_VarDP=0|61|0;DP=64;QUALapprox=2009;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=61 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:2009,183,0,2009,183,2009:0,0,30,31 +chrX 2866011 . T . . END=2866835 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 2866836 . TTA T, 2226.03 . AS_QUALapprox=|2240|0;AS_VarDP=0|51|0;DP=55;QUALapprox=2240;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:2240,154,0,2240,154,2240:0,0,23,28 +chrX 2866839 . A . . END=2867296 GT:DP:GQ:MIN_DP:PL 0/0:58:88:58:0,88,1359 +chrX 2867297 . C CA, 1810.03 . AS_QUALapprox=|1824|0;AS_VarDP=0|56|0;DP=60;QUALapprox=1824;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1824,168,0,1824,168,1824:0,0,28,28 +chrX 2867298 . A . . END=2867386 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,108,1800 +chrX 2867387 . G T, 1399.06 . AS_QUALapprox=|1413|0;AS_VarDP=0|46|0;DP=50;QUALapprox=1413;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1413,137,0,1413,137,1413:0,0,28,18 +chrX 2867388 . G . . END=2867996 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,114,1604 +chrX 2867997 . G A, 2343.06 . AS_QUALapprox=|2357|0;AS_VarDP=0|72|0;DP=73;QUALapprox=2357;RAW_GT_COUNT=0,0,1;RAW_MQandDP=261440,73;VarDP=72 GT:AD:DP:GQ:PL:SB 1/1:0,72,0:72:99:2357,216,0,2357,216,2357:0,0,33,39 +chrX 2867998 . A . . END=2868455 GT:DP:GQ:MIN_DP:PL 0/0:66:64:66:0,64,1269 +chrX 2868456 . C A, 50.64 . AS_QUALapprox=|58|0;AS_VarDP=37|22|0;BaseQRankSum=-0.059;DP=64;MQRankSum=-2.094;QUALapprox=58;RAW_GT_COUNT=0,1,0;RAW_MQandDP=221726,64;ReadPosRankSum=0.787;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:37,22,0:59:58:58,0,880,167,921,1088:27,10,0,22 +chrX 2868457 . A . . END=2869015 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 2869016 . T TA, 1328.03 . AS_QUALapprox=|1342|0;AS_VarDP=0|56|0;DP=68;QUALapprox=1342;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1342,166,0,1342,166,1342:0,0,30,26 +chrX 2869017 . A . . END=2869413 GT:DP:GQ:MIN_DP:PL 0/0:66:24:63:0,24,1530 +chrX 2869414 . G A, 1301.06 . AS_QUALapprox=|1315|0;AS_VarDP=0|40|0;DP=41;QUALapprox=1315;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147600,41;VarDP=40 GT:AD:DP:GQ:PL:SB 1/1:0,40,0:40:99:1315,120,0,1315,120,1315:0,0,22,18 +chrX 2869415 . T . . END=2869856 GT:DP:GQ:MIN_DP:PL 0/0:58:89:58:0,89,1226 +chrX 2869857 . C G, 2115.06 . AS_QUALapprox=|2129|0;AS_VarDP=0|65|0;DP=68;QUALapprox=2129;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;VarDP=65 GT:AD:DP:GQ:PL:SB 1/1:0,65,0:65:99:2129,195,0,2129,195,2129:0,0,31,34 +chrX 2869858 . T . . END=2871004 GT:DP:GQ:MIN_DP:PL 0/0:63:76:63:0,76,1106 +chrX 2871005 . A AT, 1530.03 . AS_QUALapprox=|1544|0;AS_VarDP=0|58|0;DP=65;QUALapprox=1544;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=58 GT:AD:DP:GQ:PL:SB 1/1:0,58,0:58:99:1544,174,0,1544,174,1544:0,0,29,29 +chrX 2871006 . T . . END=2871382 GT:DP:GQ:MIN_DP:PL 0/0:56:87:56:0,87,1733 +chrX 2871383 . C T, 2202.06 . AS_QUALapprox=|2216|0;AS_VarDP=1|53|0;BaseQRankSum=2.745;DP=57;MQRankSum=0.000;QUALapprox=2216;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;ReadPosRankSum=-0.476;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:1,53,0:54:99:0|1:2871383_C_T:2216,144,0,2219,158,2232:2871383:0,1,30,23 +chrX 2871384 . A . . END=2871386 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 2871387 . TA T, 2159.03 . AS_QUALapprox=|2173|0;AS_VarDP=1|52|0;BaseQRankSum=-0.297;DP=54;MQRankSum=0.000;QUALapprox=2173;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;ReadPosRankSum=-0.163;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:1,52,0:53:99:0|1:2871383_C_T:2173,141,0,2176,155,2190:2871383:0,1,31,21 +chrX 2871389 . A . . END=2871688 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 2871689 . CAAATAAATAAATAAAT C, 1989.03 . AS_QUALapprox=|2003|0;AS_VarDP=0|45|0;DP=69;QUALapprox=2003;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=45 GT:AD:DP:GQ:PL:SB 1/1:0,45,0:45:99:2003,139,0,2003,139,2003:0,0,18,27 +chrX 2871706 . A . . END=2871806 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 2871807 . T G, 2033.06 . AS_QUALapprox=|2047|0;AS_VarDP=1|67|0;BaseQRankSum=-0.608;DP=70;MQRankSum=0.000;QUALapprox=2047;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;ReadPosRankSum=-0.510;VarDP=68 GT:AD:DP:GQ:PL:SB 1/1:1,67,0:68:99:2047,168,0,2050,200,2082:1,0,36,31 +chrX 2871808 . C . . END=2872106 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,104,1594 +chrX 2872107 . T C, 2131.06 . AS_QUALapprox=|2145|0;AS_VarDP=0|64|0;DP=66;QUALapprox=2145;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=64 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:2145,192,0,2145,192,2145:0,0,28,36 +chrX 2872108 . T . . END=2873039 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,108,1696 +chrX 2873040 . T C, 877.64 . AS_QUALapprox=|885|0;AS_VarDP=23|31|0;BaseQRankSum=-0.713;DP=56;MQRankSum=0.000;QUALapprox=885;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-0.700;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:23,31,0:54:99:885,0,626,954,719,1673:13,10,19,12 +chrX 2873041 . T . . END=2876032 GT:DP:GQ:MIN_DP:PL 0/0:54:20:38:0,20,997 +chrX 2876033 . CTTTTTTTT C,CTTTTTTTTT, 649.02 . AS_QUALapprox=|554|112|0;AS_VarDP=0|14|7|0;DP=36;QUALapprox=666;RAW_GT_COUNT=0,0,1;RAW_MQandDP=127600,36;VarDP=21 GT:AD:DP:GQ:PL:SB 1/2:0,14,7,0:21:99:666,112,388,573,0,554,698,287,587,844:0,0,6,15 +chrX 2876042 . T . . END=2876055 GT:DP:GQ:MIN_DP:PL 0/0:46:32:42:0,32,1125 +chrX 2876056 . T . . END=2876056 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,1172 +chrX 2876057 . T . . END=2876061 GT:DP:GQ:MIN_DP:PL 0/0:42:89:42:0,89,1326 +chrX 2876062 . G . . END=2876063 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,968 +chrX 2876064 . G . . END=2876419 GT:DP:GQ:MIN_DP:PL 0/0:51:48:51:0,48,1127 +chrX 2876420 . G T, 689.64 . AS_QUALapprox=|697|0;AS_VarDP=31|26|0;BaseQRankSum=2.370;DP=58;MQRankSum=0.000;QUALapprox=697;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=0.208;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:31,26,0:57:99:697,0,780,789,858,1647:19,12,11,15 +chrX 2876421 . T . . END=2879216 GT:DP:GQ:MIN_DP:PL 0/0:57:92:57:0,92,1310 +chrX 2879217 . A ATAT, 1216.60 . AS_QUALapprox=|1224|0;AS_VarDP=21|31|0;BaseQRankSum=-1.205;DP=55;MQRankSum=0.000;QUALapprox=1224;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=0.392;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:21,31,0:52:99:1224,0,789,1287,882,2169:10,11,17,14 +chrX 2879218 . T . . END=2879287 GT:DP:GQ:MIN_DP:PL 0/0:50:72:50:0,72,1080 +chrX 2879288 . G T, 59.64 . AS_QUALapprox=|67|0;AS_VarDP=34|7|0;BaseQRankSum=-0.987;DP=48;MQRankSum=-1.160;QUALapprox=67;RAW_GT_COUNT=0,1,0;RAW_MQandDP=170336,48;ReadPosRankSum=1.786;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:34,7,0:41:67:67,0,973,169,994,1162:18,16,7,0 +chrX 2879289 . A . . END=2879753 GT:DP:GQ:MIN_DP:PL 0/0:58:74:58:0,74,1272 +chrX 2879754 . T C, 769.64 . AS_QUALapprox=|777|0;AS_VarDP=25|29|0;BaseQRankSum=0.847;DP=55;MQRankSum=0.000;QUALapprox=777;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=2.100;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:25,29,0:54:99:777,0,632,851,718,1570:15,10,14,15 +chrX 2879755 . A . . END=2879853 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 2879854 . T A, 853.64 . AS_QUALapprox=|861|0;AS_VarDP=28|31|0;BaseQRankSum=-0.056;DP=60;MQRankSum=0.000;QUALapprox=861;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=-2.627;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:28,31,0:59:99:861,0,716,944,810,1753:14,14,12,19 +chrX 2879855 . A . . END=2880163 GT:DP:GQ:MIN_DP:PL 0/0:63:82:63:0,82,1539 +chrX 2880164 . A ATGTGTG, 335.60 . AS_QUALapprox=|343|0;AS_VarDP=24|17|0;BaseQRankSum=-0.536;DP=62;MQRankSum=0.000;QUALapprox=343;RAW_GT_COUNT=0,1,0;RAW_MQandDP=220041,62;ReadPosRankSum=1.536;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:24,17,0:41:99:343,0,894,415,944,1359:12,12,10,7 +chrX 2880165 . T . . END=2880414 GT:DP:GQ:MIN_DP:PL 0/0:63:59:63:0,59,1487 +chrX 2880415 . AGT A, 527.60 . AS_QUALapprox=|535|0;AS_VarDP=24|19|0;BaseQRankSum=-1.589;DP=57;MQRankSum=0.000;QUALapprox=535;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-0.759;VarDP=43 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,19,0:43:99:0|1:2880415_AGT_A:535,0,950,608,1008,1615:2880415:8,16,8,11 +chrX 2880418 . G . . END=2880438 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 2880439 . T C, 712.64 . AS_QUALapprox=|720|0;AS_VarDP=22|27|0;BaseQRankSum=-0.933;DP=51;MQRankSum=0.000;QUALapprox=720;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-0.825;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:22,27,0:49:99:1|0:2880415_AGT_A:720,0,807,786,888,1675:2880415:9,13,8,19 +chrX 2880440 . G . . END=2882253 GT:DP:GQ:MIN_DP:PL 0/0:51:92:51:0,92,1151 +chrX 2882254 . G C, 1528.06 . AS_QUALapprox=|1542|0;AS_VarDP=0|49|0;DP=53;QUALapprox=1542;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1542,146,0,1542,146,1542:0,0,21,28 +chrX 2882255 . G . . END=2882582 GT:DP:GQ:MIN_DP:PL 0/0:61:42:61:0,42,1181 +chrX 2882583 . G T, 551.64 . AS_QUALapprox=|559|0;AS_VarDP=17|21|0;BaseQRankSum=0.830;DP=38;MQRankSum=0.000;QUALapprox=559;RAW_GT_COUNT=0,1,0;RAW_MQandDP=136800,38;ReadPosRankSum=-0.954;VarDP=38 GT:AD:DP:GQ:PL:SB 0/1:17,21,0:38:99:559,0,396,610,459,1069:9,8,16,5 +chrX 2882584 . G . . END=2882635 GT:DP:GQ:MIN_DP:PL 0/0:36:85:36:0,85,977 +chrX 2882636 . A G, 526.64 . AS_QUALapprox=|534|0;AS_VarDP=20|21|0;BaseQRankSum=-1.764;DP=41;MQRankSum=0.000;QUALapprox=534;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147600,41;ReadPosRankSum=-0.130;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:20,21,0:41:99:534,0,552,594,615,1209:8,12,12,9 +chrX 2882637 . G . . END=2882958 GT:DP:GQ:MIN_DP:PL 0/0:57:90:57:0,90,1046 +chrX 2882959 . G A, 565.64 . AS_QUALapprox=|573|0;AS_VarDP=34|22|0;BaseQRankSum=1.618;DP=61;MQRankSum=0.000;QUALapprox=573;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=0.025;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:34,22,0:56:99:573,0,909,675,975,1650:25,9,12,10 +chrX 2882960 . G . . END=2882984 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 2882985 . T A, 457.64 . AS_QUALapprox=|465|0;AS_VarDP=36|19|0;BaseQRankSum=0.344;DP=58;MQRankSum=0.000;QUALapprox=465;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=0.487;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:36,19,0:55:99:465,0,1016,573,1073,1646:24,12,12,7 +chrX 2882986 . A . . END=2883113 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 2883114 . C A, 688.64 . AS_QUALapprox=|696|0;AS_VarDP=34|27|0;BaseQRankSum=0.504;DP=68;MQRankSum=0.000;QUALapprox=696;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=-0.821;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:34,27,0:61:99:696,0,878,797,960,1757:15,19,15,12 +chrX 2883115 . A . . END=2883263 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 2883264 . T TATA, 704.60 . AS_QUALapprox=|712|0;AS_VarDP=28|19|0;BaseQRankSum=0.176;DP=67;MQRankSum=0.000;QUALapprox=712;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=0.672;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:28,19,0:47:99:712,0,1119,796,1176,1973:14,14,6,13 +chrX 2883265 . A . . END=2884019 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,101,1439 +chrX 2884020 . G GC, 859.60 . AS_QUALapprox=|867|0;AS_VarDP=37|30|0;BaseQRankSum=2.988;DP=71;MQRankSum=0.000;QUALapprox=867;RAW_GT_COUNT=0,1,0;RAW_MQandDP=255600,71;ReadPosRankSum=1.179;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:37,30,0:67:99:867,0,1114,978,1204,2182:19,18,18,12 +chrX 2884021 . C . . END=2884140 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 2884141 . A C, 972.64 . AS_QUALapprox=|980|0;AS_VarDP=32|38|0;BaseQRankSum=-0.161;DP=73;MQRankSum=0.000;QUALapprox=980;RAW_GT_COUNT=0,1,0;RAW_MQandDP=262800,73;ReadPosRankSum=0.307;VarDP=70 GT:AD:DP:GQ:PL:SB 0/1:32,38,0:70:99:980,0,798,1075,911,1987:17,15,25,13 +chrX 2884142 . C . . END=2884314 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 2884315 . G A, 1210.64 . AS_QUALapprox=|1218|0;AS_VarDP=24|31|0;BaseQRankSum=0.719;DP=56;MQRankSum=0.000;QUALapprox=1218;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=2.071;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,31,0:55:99:0|1:2884315_G_A:1218,0,914,1291,1007,2298:2884315:9,15,12,19 +chrX 2884316 . C . . END=2884326 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 2884327 . G A, 1277.64 . AS_QUALapprox=|1285|0;AS_VarDP=27|34|0;BaseQRankSum=1.142;DP=61;MQRankSum=0.000;QUALapprox=1285;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=1.947;VarDP=61 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,34,0:61:99:0|1:2884315_G_A:1285,0,1000,1366,1102,2469:2884315:10,17,14,20 +chrX 2884328 . A . . END=2884354 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 2884355 . T C, 1329.64 . AS_QUALapprox=|1337|0;AS_VarDP=26|34|0;BaseQRankSum=-1.090;DP=62;MQRankSum=0.000;QUALapprox=1337;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=0.709;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,34,0:60:99:0|1:2884355_T_C:1337,0,989,1415,1091,2506:2884355:10,16,14,20 +chrX 2884356 . T C, 1329.64 . AS_QUALapprox=|1337|0;AS_VarDP=26|34|0;BaseQRankSum=0.750;DP=63;MQRankSum=0.000;QUALapprox=1337;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=0.802;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,34,0:60:99:0|1:2884355_T_C:1337,0,989,1415,1091,2506:2884355:10,16,14,20 +chrX 2884357 . T . . END=2884684 GT:DP:GQ:MIN_DP:PL 0/0:55:92:55:0,92,1373 +chrX 2884685 . T C, 1515.06 . AS_QUALapprox=|1529|0;AS_VarDP=0|46|0;DP=50;QUALapprox=1529;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165773,50;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1529,138,0,1529,138,1529:0,0,20,26 +chrX 2884686 . T . . END=2884949 GT:DP:GQ:MIN_DP:PL 0/0:52:77:52:0,77,1241 +chrX 2884950 . A T, 1053.64 . AS_QUALapprox=|1061|0;AS_VarDP=31|38|0;BaseQRankSum=0.693;DP=70;MQRankSum=-1.705;QUALapprox=1061;RAW_GT_COUNT=0,1,0;RAW_MQandDP=232964,70;ReadPosRankSum=-0.609;VarDP=69 GT:AD:DP:GQ:PL:SB 0/1:31,38,0:69:99:1061,0,819,1154,933,2087:14,17,27,11 +chrX 2884951 . T . . END=2885086 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 2885087 . GC G, 1847.03 . AS_QUALapprox=|1861|0;AS_VarDP=0|51|0;DP=55;QUALapprox=1861;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1861,154,0,1861,154,1861:0,0,28,23 +chrX 2885089 . C . . END=2885234 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,116,1609 +chrX 2885235 . A G, 1876.06 . AS_QUALapprox=|1890|0;AS_VarDP=0|60|0;DP=60;QUALapprox=1890;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:1890,180,0,1890,180,1890:0,0,27,33 +chrX 2885236 . T . . END=2885261 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 2885262 . A G, 496.64 . AS_QUALapprox=|504|0;AS_VarDP=36|21|0;BaseQRankSum=0.694;DP=60;MQRankSum=0.000;QUALapprox=504;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=-1.729;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:36,21,0:57:99:504,0,960,611,1023,1634:18,18,10,11 +chrX 2885263 . C . . END=2885345 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 2885346 . G A, 1064.64 . AS_QUALapprox=|1072|0;AS_VarDP=31|38|0;BaseQRankSum=0.693;DP=73;MQRankSum=0.000;QUALapprox=1072;RAW_GT_COUNT=0,1,0;RAW_MQandDP=262800,73;ReadPosRankSum=-0.760;VarDP=69 GT:AD:DP:GQ:PL:SB 0/1:31,38,0:69:99:1072,0,820,1166,934,2100:19,12,18,20 +chrX 2885347 . G . . END=2885427 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 2885428 . T C, 2035.06 . AS_QUALapprox=|2049|0;AS_VarDP=0|65|0;DP=69;QUALapprox=2049;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=65 GT:AD:DP:GQ:PL:SB 1/1:0,65,0:65:99:2049,194,0,2049,194,2049:0,0,31,34 +chrX 2885429 . G . . END=2885573 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,102,1335 +chrX 2885574 . CAA C,CA, 900.02 . AS_QUALapprox=|687|487|0;AS_VarDP=3|24|14|0;BaseQRankSum=-0.425;DP=64;MQRankSum=-0.198;QUALapprox=920;RAW_GT_COUNT=0,0,1;RAW_MQandDP=228517,64;ReadPosRankSum=-1.040;VarDP=41 GT:AD:DP:GQ:PL:SB 1/2:3,24,14,0:41:99:920,233,399,487,0,433,914,289,526,955:0,3,19,15 +chrX 2885577 . A . . END=2885607 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 2885608 . AATTAAATC A, 2652.03 . AS_QUALapprox=|2666|0;AS_VarDP=0|61|0;DP=67;QUALapprox=2666;RAW_GT_COUNT=0,0,1;RAW_MQandDP=239317,67;VarDP=61 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:2666,184,0,2666,184,2666:0,0,29,32 +chrX 2885617 . A . . END=2885646 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 2885647 . T G, 1074.64 . AS_QUALapprox=|1082|0;AS_VarDP=34|40|0;BaseQRankSum=-1.033;DP=77;MQRankSum=-0.895;QUALapprox=1082;RAW_GT_COUNT=0,1,0;RAW_MQandDP=276516,77;ReadPosRankSum=0.304;VarDP=74 GT:AD:DP:GQ:PL:SB 0/1:34,40,0:74:99:1082,0,913,1184,1033,2217:21,13,21,19 +chrX 2885648 . T . . END=2885953 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,115,1800 +chrX 2885954 . AT A, 658.60 . AS_QUALapprox=|666|0;AS_VarDP=35|28|0;BaseQRankSum=0.831;DP=77;MQRankSum=-5.727;QUALapprox=666;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234196,77;ReadPosRankSum=-0.464;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:35,28,0:63:99:666,0,868,772,952,1724:12,23,12,16 +chrX 2885956 . T . . END=2886143 GT:DP:GQ:MIN_DP:PL 0/0:59:97:59:0,97,1552 +chrX 2886144 . G A, 624.64 . AS_QUALapprox=|632|0;AS_VarDP=23|23|0;BaseQRankSum=0.476;DP=49;MQRankSum=-0.989;QUALapprox=632;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172240,49;ReadPosRankSum=0.044;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:23,23,0:46:99:632,0,606,700,676,1376:13,10,11,12 +chrX 2886145 . G . . END=2886382 GT:DP:GQ:MIN_DP:PL 0/0:53:90:53:0,90,1397 +chrX 2886383 . CTTTTTT C,CTTTTTTTTTTT, 1490.02 . AS_QUALapprox=|903|651|0;AS_VarDP=0|22|15|0;DP=50;QUALapprox=1507;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176240,50;VarDP=37 GT:AD:DP:GQ:PL:SB 1/2:0,22,15,0:37:99:1507,612,604,900,0,856,1514,645,904,1542:0,0,23,14 +chrX 2886390 . T . . END=2886400 GT:DP:GQ:MIN_DP:PL 0/0:53:90:53:0,90,1613 +chrX 2886401 . A . . END=2886405 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,1120 +chrX 2886406 . A . . END=2886406 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 2886407 . C . . END=2886407 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,1151 +chrX 2886408 . A . . END=2887482 GT:DP:GQ:MIN_DP:PL 0/0:59:79:59:0,79,1181 +chrX 2887483 . AT A,ATT, 764.02 . AS_QUALapprox=|336|372|0;AS_VarDP=2|19|23|0;BaseQRankSum=-0.629;DP=61;MQRankSum=-0.460;QUALapprox=781;RAW_GT_COUNT=0,0,1;RAW_MQandDP=210991,61;ReadPosRankSum=1.268;VarDP=44 GT:AD:DP:GQ:PL:SB 1/2:2,19,23,0:44:99:781,445,613,409,0,515,865,591,529,1043:0,2,21,21 +chrX 2887485 . T . . END=2887500 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 2887501 . C . . END=2887501 GT:DP:GQ:MIN_DP:PL 0/0:54:0:54:0,0,1461 +chrX 2887502 . A . . END=2887744 GT:DP:GQ:MIN_DP:PL 0/0:46:73:46:0,73,1314 +chrX 2887745 . T C, 905.64 . AS_QUALapprox=|913|0;AS_VarDP=24|34|0;BaseQRankSum=0.074;DP=60;MQRankSum=0.000;QUALapprox=913;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=0.624;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:24,34,0:58:99:913,0,600,985,702,1687:10,14,15,19 +chrX 2887746 . G . . END=2887762 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 2887763 . A AAAG, 2459.03 . AS_QUALapprox=|2473|0;AS_VarDP=0|57|0;DP=69;QUALapprox=2473;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:2473,171,0,2473,172,2474:0,0,27,30 +chrX 2887764 . A . . END=2887865 GT:DP:GQ:MIN_DP:PL 0/0:63:70:63:0,70,1677 +chrX 2887866 . C CAA, 813.60 . AS_QUALapprox=|821|0;AS_VarDP=20|28|0;BaseQRankSum=-1.065;DP=56;MQRankSum=0.000;QUALapprox=821;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-0.868;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:20,28,0:48:99:821,0,575,881,659,1541:13,7,15,13 +chrX 2887867 . A . . END=2888154 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,100,1336 +chrX 2888155 . G A, 1560.06 . AS_QUALapprox=|1574|0;AS_VarDP=0|46|0;DP=47;QUALapprox=1574;RAW_GT_COUNT=0,0,1;RAW_MQandDP=168304,47;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1574,138,0,1574,138,1574:0,0,22,24 +chrX 2888156 . G . . END=2888232 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,105,1170 +chrX 2888233 . A C, 1503.06 . AS_QUALapprox=|1517|0;AS_VarDP=0|47|0;DP=47;QUALapprox=1517;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1517,141,0,1517,141,1517:0,0,27,20 +chrX 2888234 . A . . END=2888547 GT:DP:GQ:MIN_DP:PL 0/0:51:92:51:0,92,1185 +chrX 2888548 . A G, 1799.06 . AS_QUALapprox=|1813|0;AS_VarDP=0|55|0;DP=57;QUALapprox=1813;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1813,165,0,1813,165,1813:0,0,22,33 +chrX 2888549 . A . . END=2890782 GT:DP:GQ:MIN_DP:PL 0/0:32:27:31:0,27,873 +chrX 2890783 . A . . END=2890783 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,814 +chrX 2890784 . G . . END=2891324 GT:DP:GQ:MIN_DP:PL 0/0:53:59:53:0,59,864 +chrX 2891325 . C G, 1768.06 . AS_QUALapprox=|1782|0;AS_VarDP=0|55|0;DP=57;QUALapprox=1782;RAW_GT_COUNT=0,0,1;RAW_MQandDP=98460,57;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1782,164,0,1782,164,1782:0,0,34,21 +chrX 2891326 . C . . END=2891807 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,108,1800 +chrX 2891808 . A C, 595.64 . AS_QUALapprox=|603|0;AS_VarDP=38|24|0;BaseQRankSum=0.991;DP=63;MQRankSum=0.000;QUALapprox=603;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=-0.896;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:38,24,0:62:99:603,0,1045,717,1117,1834:17,21,18,6 +chrX 2891809 . C . . END=2891933 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,115,1538 +chrX 2891934 . T C, 810.64 . AS_QUALapprox=|818|0;AS_VarDP=16|27|0;BaseQRankSum=1.611;DP=45;MQRankSum=0.000;QUALapprox=818;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=1.772;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:16,27,0:43:99:818,0,387,866,468,1334:7,9,14,13 +chrX 2891935 . C . . END=2893851 GT:DP:GQ:MIN_DP:PL 0/0:53:49:53:0,49,946 +chrX 2893852 . G . . END=2893852 GT:DP:GQ:MIN_DP:PL 0/0:34:13:34:0,13,833 +chrX 2893853 . T . . END=2893939 GT:DP:GQ:MIN_DP:PL 0/0:30:21:25:0,21,700 +chrX 2893940 . C . . END=2893940 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,785 +chrX 2893941 . T . . END=2893941 GT:DP:GQ:MIN_DP:PL 0/0:30:21:30:0,21,894 +chrX 2893942 . A . . END=2893943 GT:DP:GQ:MIN_DP:PL 0/0:29:17:29:0,17,808 +chrX 2893944 . C . . END=2893971 GT:DP:GQ:MIN_DP:PL 0/0:29:46:23:0,46,640 +chrX 2893972 . T TAC,TATATATATAC,TATATATATATAC, 230.60 . AS_QUALapprox=|143|238|211|0;AS_VarDP=20|1|2|1|0;BaseQRankSum=1.530;DP=38;MQRankSum=0.559;QUALapprox=238;RAW_GT_COUNT=0,1,0;RAW_MQandDP=132893,38;ReadPosRankSum=1.009;VarDP=24 GT:AD:DP:GQ:PL:SB 0/2:20,1,2,1,0:24:27:238,95,751,0,598,715,27,627,671,745,100,733,729,757,852:10,10,1,3 +chrX 2893973 . A . . END=2893973 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,108,1620 +chrX 2893974 . C . . END=2893974 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,815 +chrX 2893975 . A . . END=2893975 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,108,1620 +chrX 2893976 . C . . END=2893976 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,877 +chrX 2893977 . A . . END=2893977 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,108,1620 +chrX 2893978 . C . . END=2893978 GT:DP:GQ:MIN_DP:PL 0/0:38:10:38:0,10,982 +chrX 2893979 . A . . END=2893979 GT:DP:GQ:MIN_DP:PL 0/0:40:91:40:0,91,1120 +chrX 2893980 . C . . END=2893980 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,848 +chrX 2893981 . A . . END=2894399 GT:DP:GQ:MIN_DP:PL 0/0:41:36:39:0,36,918 +chrX 2894400 . T A, 827.64 . AS_QUALapprox=|835|0;AS_VarDP=30|30|0;BaseQRankSum=0.000;DP=63;MQRankSum=-0.967;QUALapprox=835;RAW_GT_COUNT=0,1,0;RAW_MQandDP=225700,63;ReadPosRankSum=1.361;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:30,30,0:60:99:835,0,842,925,932,1857:14,16,14,16 +chrX 2894401 . A . . END=2895245 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,99,1419 +chrX 2895246 . T C, 675.64 . AS_QUALapprox=|683|0;AS_VarDP=26|26|0;BaseQRankSum=-0.054;DP=54;MQRankSum=0.000;QUALapprox=683;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=0.687;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:26,26,0:52:99:683,0,698,761,775,1536:9,17,11,15 +chrX 2895247 . G . . END=2895632 GT:DP:GQ:MIN_DP:PL 0/0:51:54:51:0,54,1107 +chrX 2895633 . T . . END=2895633 GT:DP:GQ:MIN_DP:PL 0/0:40:11:40:0,11,1001 +chrX 2895634 . CAAAAAAAAAAAAAAAAAAAAAAAA C, 437.60 . AS_QUALapprox=|445|0;AS_VarDP=26|13|0;BaseQRankSum=-0.595;DP=56;MQRankSum=1.449;QUALapprox=445;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180062,56;ReadPosRankSum=0.134;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:26,13,0:39:99:445,0,1024,523,1066,1590:12,14,6,7 +chrX 2895659 . A . . END=2895718 GT:DP:GQ:MIN_DP:PL 0/0:45:73:45:0,73,1125 +chrX 2895719 . A G, 1011.64 . AS_QUALapprox=|1019|0;AS_VarDP=24|26|0;BaseQRankSum=-1.620;DP=51;MQRankSum=-1.675;QUALapprox=1019;RAW_GT_COUNT=0,1,0;RAW_MQandDP=182777,51;ReadPosRankSum=1.121;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,26,0:50:99:0|1:2895719_A_G:1019,0,918,1092,996,2088:2895719:10,14,14,12 +chrX 2895720 . G . . END=2895723 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 2895724 . T C, 1011.64 . AS_QUALapprox=|1019|0;AS_VarDP=24|26|0;BaseQRankSum=-1.330;DP=50;MQRankSum=-1.675;QUALapprox=1019;RAW_GT_COUNT=0,1,0;RAW_MQandDP=179177,50;ReadPosRankSum=0.451;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,26,0:50:99:0|1:2895719_A_G:1019,0,918,1092,996,2088:2895719:10,14,14,12 +chrX 2895725 . G . . END=2895728 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,120,1800 +chrX 2895729 . T C, 973.64 . AS_QUALapprox=|981|0;AS_VarDP=23|25|0;BaseQRankSum=-1.578;DP=48;MQRankSum=-1.672;QUALapprox=981;RAW_GT_COUNT=0,1,0;RAW_MQandDP=171977,48;ReadPosRankSum=0.506;VarDP=48 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,25,0:48:99:0|1:2895719_A_G:981,0,891,1050,966,2016:2895719:10,13,13,12 +chrX 2895730 . G . . END=2895734 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,120,1800 +chrX 2895735 . A G, 931.64 . AS_QUALapprox=|939|0;AS_VarDP=23|24|0;BaseQRankSum=-1.690;DP=47;MQRankSum=-1.369;QUALapprox=939;RAW_GT_COUNT=0,1,0;RAW_MQandDP=168613,47;ReadPosRankSum=0.756;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,24,0:47:99:0|1:2895719_A_G:939,0,894,1008,966,1974:2895719:10,13,13,11 +chrX 2895736 . A . . END=2895812 GT:DP:GQ:MIN_DP:PL 0/0:57:85:57:0,85,1512 +chrX 2895813 . T A, 743.64 . AS_QUALapprox=|751|0;AS_VarDP=26|31|0;BaseQRankSum=-0.580;DP=58;MQRankSum=-1.594;QUALapprox=751;RAW_GT_COUNT=0,1,0;RAW_MQandDP=204053,58;ReadPosRankSum=0.433;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:26,31,0:57:99:751,0,640,828,731,1559:12,14,11,20 +chrX 2895814 . A . . END=2895876 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 2895877 . A G, 497.64 . AS_QUALapprox=|505|0;AS_VarDP=32|20|0;BaseQRankSum=0.288;DP=54;MQRankSum=-0.954;QUALapprox=505;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190105,54;ReadPosRankSum=0.536;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:32,20,0:52:99:505,0,886,600,945,1546:16,16,7,13 +chrX 2895878 . G . . END=2895922 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 2895923 . A G, 932.64 . AS_QUALapprox=|940|0;AS_VarDP=37|26|0;BaseQRankSum=-0.551;DP=63;MQRankSum=-1.678;QUALapprox=940;RAW_GT_COUNT=0,1,0;RAW_MQandDP=224505,63;ReadPosRankSum=-1.763;VarDP=63 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:37,26,0:63:99:0|1:2895923_A_G:940,0,1403,1051,1481,2533:2895923:20,17,13,13 +chrX 2895924 . C . . END=2895941 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 2895942 . TG T, 1020.60 . AS_QUALapprox=|1028|0;AS_VarDP=35|27|0;BaseQRankSum=-1.188;DP=62;MQRankSum=-1.600;QUALapprox=1028;RAW_GT_COUNT=0,1,0;RAW_MQandDP=220905,62;ReadPosRankSum=-0.567;VarDP=62 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:35,27,0:62:99:0|1:2895923_A_G:1028,0,1358,1134,1439,2573:2895923:18,17,13,14 +chrX 2895944 . G . . END=2895946 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 2895947 . A G, 1065.64 . AS_QUALapprox=|1073|0;AS_VarDP=34|28|0;BaseQRankSum=-1.153;DP=62;MQRankSum=-1.548;QUALapprox=1073;RAW_GT_COUNT=0,1,0;RAW_MQandDP=220905,62;ReadPosRankSum=0.052;VarDP=62 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:34,28,0:62:99:0|1:2895923_A_G:1073,0,1343,1176,1428,2603:2895923:18,16,14,14 +chrX 2895948 . A . . END=2895951 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 2895952 . A G, 1026.64 . AS_QUALapprox=|1034|0;AS_VarDP=33|27|0;BaseQRankSum=-1.614;DP=60;MQRankSum=-1.553;QUALapprox=1034;RAW_GT_COUNT=0,1,0;RAW_MQandDP=213705,60;ReadPosRankSum=0.089;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:33,27,0:60:99:0|1:2895923_A_G:1034,0,1304,1134,1386,2519:2895923:17,16,14,13 +chrX 2895953 . G . . END=2895953 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 2895954 . C T, 1023.64 . AS_QUALapprox=|1031|0;AS_VarDP=34|27|0;BaseQRankSum=-0.297;DP=61;MQRankSum=-1.577;QUALapprox=1031;RAW_GT_COUNT=0,1,0;RAW_MQandDP=217305,61;ReadPosRankSum=0.550;VarDP=61 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:34,27,0:61:99:0|1:2895923_A_G:1031,0,1346,1134,1428,2561:2895923:17,17,14,13 +chrX 2895955 . G . . END=2895967 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 2895968 . AAAATAAAT A, 974.60 . AS_QUALapprox=|982|0;AS_VarDP=32|26|0;BaseQRankSum=-0.695;DP=61;MQRankSum=-1.075;QUALapprox=982;RAW_GT_COUNT=0,1,0;RAW_MQandDP=218304,61;ReadPosRankSum=1.249;VarDP=58 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:32,26,0:58:99:0|1:2895923_A_G:982,0,1260,1078,1338,2416:2895923:17,15,14,12 +chrX 2895977 . A . . END=2896118 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,119,1593 +chrX 2896119 . C T, 910.64 . AS_QUALapprox=|918|0;AS_VarDP=24|34|0;BaseQRankSum=-0.763;DP=60;MQRankSum=0.000;QUALapprox=918;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=0.332;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:24,34,0:58:99:918,0,604,990,706,1695:7,17,18,16 +chrX 2896120 . G . . END=2896612 GT:DP:GQ:MIN_DP:PL 0/0:40:36:37:0,36,1028 +chrX 2896613 . C CA, 240.60 . AS_QUALapprox=|248|0;AS_VarDP=12|15|0;BaseQRankSum=-0.180;DP=43;MQRankSum=-0.820;QUALapprox=248;RAW_GT_COUNT=0,1,0;RAW_MQandDP=152800,43;ReadPosRankSum=-1.222;VarDP=27 GT:AD:DP:GQ:PL:SB 0/1:12,15,0:27:99:248,0,187,284,232,516:8,4,7,8 +chrX 2896614 . A . . END=2896886 GT:DP:GQ:MIN_DP:PL 0/0:49:92:49:0,92,1320 +chrX 2896887 . A G, 1056.64 . AS_QUALapprox=|1064|0;AS_VarDP=37|28|0;BaseQRankSum=-3.100;DP=67;MQRankSum=0.000;QUALapprox=1064;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=-1.809;VarDP=65 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:37,28,0:65:99:0|1:2896887_A_G:1064,0,1464,1175,1549,2724:2896887:20,17,12,16 +chrX 2896888 . G C, 1056.64 . AS_QUALapprox=|1064|0;AS_VarDP=37|28|0;BaseQRankSum=-1.489;DP=67;MQRankSum=0.000;QUALapprox=1064;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=-1.782;VarDP=65 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:37,28,0:65:99:0|1:2896887_A_G:1064,0,1464,1175,1549,2724:2896887:20,17,12,16 +chrX 2896889 . C . . END=2897145 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,106,1787 +chrX 2897146 . A C, 547.64 . AS_QUALapprox=|555|0;AS_VarDP=34|24|0;BaseQRankSum=-1.636;DP=58;MQRankSum=0.000;QUALapprox=555;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=0.111;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:34,24,0:58:99:555,0,933,657,1005,1662:11,23,9,15 +chrX 2897147 . A . . END=2898040 GT:DP:GQ:MIN_DP:PL 0/0:54:41:54:0,41,1027 +chrX 2898041 . T C, 540.64 . AS_QUALapprox=|548|0;AS_VarDP=23|21|0;BaseQRankSum=0.576;DP=45;MQRankSum=-0.065;QUALapprox=548;RAW_GT_COUNT=0,1,0;RAW_MQandDP=160650,45;ReadPosRankSum=-0.929;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:23,21,0:44:99:548,0,582,617,645,1262:14,9,7,14 +chrX 2898042 . G . . END=2899087 GT:DP:GQ:MIN_DP:PL 0/0:57:98:57:0,98,1290 +chrX 2899088 . G A, 184.64 . AS_QUALapprox=|192|0;AS_VarDP=48|12|0;BaseQRankSum=-1.103;DP=63;MQRankSum=-2.823;QUALapprox=192;RAW_GT_COUNT=0,1,0;RAW_MQandDP=222052,63;ReadPosRankSum=-0.277;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:48,12,0:60:99:192,0,1410,336,1446,1782:24,24,6,6 +chrX 2899089 . G . . END=2900227 GT:DP:GQ:MIN_DP:PL 0/0:56:72:56:0,72,1405 +chrX 2900228 . G . . END=2900228 GT:DP:GQ:MIN_DP:PL 0/0:61:2:61:0,2,1537 +chrX 2900229 . C . . END=2900246 GT:DP:GQ:MIN_DP:PL 0/0:59:47:59:0,47,1581 +chrX 2900247 . A . . END=2900247 GT:DP:GQ:MIN_DP:PL 0/0:57:0:57:0,0,1342 +chrX 2900248 . T . . END=2900281 GT:DP:GQ:MIN_DP:PL 0/0:51:36:50:0,36,540 +chrX 2900282 . G . . END=2900282 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,730 +chrX 2900283 . A . . END=2903936 GT:DP:GQ:MIN_DP:PL 0/0:33:29:30:0,29,931 +chrX 2903937 . A C, 708.64 . AS_QUALapprox=|716|0;AS_VarDP=37|20|0;BaseQRankSum=-1.333;DP=57;MQRankSum=0.000;QUALapprox=716;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=0.761;VarDP=57 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:37,20,0:57:99:0|1:2903937_A_C:716,0,1493,828,1554,2381:2903937:20,17,9,11 +chrX 2903938 . G T, 708.64 . AS_QUALapprox=|716|0;AS_VarDP=37|20|0;BaseQRankSum=-0.176;DP=58;MQRankSum=0.000;QUALapprox=716;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=1.264;VarDP=57 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:37,20,0:57:99:0|1:2903937_A_C:716,0,1493,828,1554,2381:2903937:20,17,9,11 +chrX 2903939 . G . . END=2908592 GT:DP:GQ:MIN_DP:PL 0/0:48:29:44:0,29,972 +chrX 2908593 . G . . END=2908593 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,1142 +chrX 2908594 . C . . END=2909681 GT:DP:GQ:MIN_DP:PL 0/0:46:37:42:0,37,688 +chrX 2909682 . T . . END=2909683 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,502 +chrX 2909684 . A . . END=2910080 GT:DP:GQ:MIN_DP:PL 0/0:40:23:29:0,23,800 +chrX 2910081 . C T, 726.64 . AS_QUALapprox=|734|0;AS_VarDP=30|26|0;BaseQRankSum=0.967;DP=59;MQRankSum=0.000;QUALapprox=734;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-1.011;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:30,26,0:56:99:734,0,874,825,952,1776:14,16,18,8 +chrX 2910082 . G . . END=2910956 GT:DP:GQ:MIN_DP:PL 0/0:66:97:66:0,97,1558 +chrX 2910957 . C T, 660.64 . AS_QUALapprox=|668|0;AS_VarDP=27|25|0;BaseQRankSum=0.628;DP=55;MQRankSum=0.000;QUALapprox=668;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-0.293;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:27,25,0:52:99:668,0,717,749,792,1541:16,11,10,15 +chrX 2910958 . A . . END=2911668 GT:DP:GQ:MIN_DP:PL 0/0:46:36:40:0,36,1111 +chrX 2911669 . C . . END=2911669 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,943 +chrX 2911670 . A . . END=2913959 GT:DP:GQ:MIN_DP:PL 0/0:58:64:58:0,64,1254 +chrX 2913960 . A G, 403.64 . AS_QUALapprox=|411|0;AS_VarDP=29|19|0;BaseQRankSum=-3.234;DP=48;MQRankSum=0.000;QUALapprox=411;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=-1.709;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:29,19,0:48:99:411,0,844,498,901,1399:16,13,14,5 +chrX 2913961 . C . . END=2914417 GT:DP:GQ:MIN_DP:PL 0/0:55:46:55:0,46,1121 +chrX 2914418 . TG T, 340.60 . AS_QUALapprox=|348|0;AS_VarDP=15|16|0;BaseQRankSum=0.554;DP=41;MQRankSum=0.000;QUALapprox=348;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147600,41;ReadPosRankSum=-0.044;VarDP=31 GT:AD:DP:GQ:PL:SB 0/1:15,16,0:31:99:348,0,306,393,354,747:6,9,7,9 +chrX 2914420 . G . . END=2914700 GT:DP:GQ:MIN_DP:PL 0/0:54:88:54:0,88,1229 +chrX 2914701 . G C, 913.64 . AS_QUALapprox=|921|0;AS_VarDP=24|33|0;BaseQRankSum=2.480;DP=58;MQRankSum=0.000;QUALapprox=921;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-0.558;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:24,33,0:57:99:921,0,548,992,647,1640:13,11,19,14 +chrX 2914702 . T . . END=2915464 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,102,1747 +chrX 2915465 . G C, 887.64 . AS_QUALapprox=|895|0;AS_VarDP=24|35|0;BaseQRankSum=-2.331;DP=60;MQRankSum=-0.794;QUALapprox=895;RAW_GT_COUNT=0,1,0;RAW_MQandDP=215209,60;ReadPosRankSum=-0.031;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:24,35,0:59:99:895,0,623,966,727,1694:16,8,12,23 +chrX 2915466 . T . . END=2915814 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 2915815 . T C, 685.64 . AS_QUALapprox=|693|0;AS_VarDP=34|27|0;BaseQRankSum=-0.082;DP=61;MQRankSum=0.000;QUALapprox=693;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-1.837;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:34,27,0:61:99:693,0,914,795,995,1790:19,15,19,8 +chrX 2915816 . C . . END=2916031 GT:DP:GQ:MIN_DP:PL 0/0:56:74:56:0,74,1539 +chrX 2916032 . C T, 631.64 . AS_QUALapprox=|639|0;AS_VarDP=21|24|0;BaseQRankSum=-2.414;DP=48;MQRankSum=0.000;QUALapprox=639;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=-1.138;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:21,24,0:45:99:639,0,595,702,667,1369:10,11,11,13 +chrX 2916033 . G . . END=2916128 GT:DP:GQ:MIN_DP:PL 0/0:43:20:43:0,20,1116 +chrX 2916129 . C . . END=2916130 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,907 +chrX 2916131 . C CAAA, 573.60 . AS_QUALapprox=|581|0;AS_VarDP=11|21|0;BaseQRankSum=-0.036;DP=55;MQRankSum=-0.993;QUALapprox=581;RAW_GT_COUNT=0,1,0;RAW_MQandDP=195649,55;ReadPosRankSum=-1.646;VarDP=32 GT:AD:DP:GQ:PL:SB 0/1:11,21,0:32:99:581,0,309,615,371,986:4,7,7,14 +chrX 2916132 . A . . END=2916152 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 2916153 . G . . END=2916153 GT:DP:GQ:MIN_DP:PL 0/0:54:8:54:0,8,1439 +chrX 2916154 . A . . END=2916488 GT:DP:GQ:MIN_DP:PL 0/0:58:30:53:0,30,1412 +chrX 2916489 . G C, 871.64 . AS_QUALapprox=|879|0;AS_VarDP=31|35|0;BaseQRankSum=0.280;DP=68;MQRankSum=0.000;QUALapprox=879;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=0.514;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:31,35,0:66:99:879,0,775,972,880,1851:16,15,14,21 +chrX 2916490 . C . . END=2916798 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,102,1265 +chrX 2916799 . C T, 530.64 . AS_QUALapprox=|538|0;AS_VarDP=19|20|0;BaseQRankSum=-1.235;DP=41;MQRankSum=0.000;QUALapprox=538;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147600,41;ReadPosRankSum=0.253;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:19,20,0:39:99:538,0,518,595,578,1173:8,11,7,13 +chrX 2916800 . G . . END=2917065 GT:DP:GQ:MIN_DP:PL 0/0:40:28:32:0,28,663 +chrX 2917066 . CA *,C, 55.60 . AS_QUALapprox=|0|63|0;AS_VarDP=8|2|5|0;BaseQRankSum=0.917;DP=33;MQRankSum=0.000;QUALapprox=63;RAW_GT_COUNT=0,1,0;RAW_MQandDP=118800,33;ReadPosRankSum=-1.022;VarDP=15 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 2|0:8,2,5,0:15:63:1|0:2917065_TC_T:63,72,616,0,137,145,122,514,190,536:2917065:7,1,4,3 +chrX 2917068 . A . . END=2917995 GT:DP:GQ:MIN_DP:PL 0/0:41:39:31:0,39,810 +chrX 2917996 . G C, 674.64 . AS_QUALapprox=|682|0;AS_VarDP=45|27|0;BaseQRankSum=-0.759;DP=76;MQRankSum=0.000;QUALapprox=682;RAW_GT_COUNT=0,1,0;RAW_MQandDP=273600,76;ReadPosRankSum=-1.111;VarDP=72 GT:AD:DP:GQ:PL:SB 0/1:45,27,0:72:99:682,0,1308,817,1389,2206:24,21,10,17 +chrX 2917997 . A . . END=2918694 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,102,1425 +chrX 2918695 . A G, 2720.06 . AS_QUALapprox=|2734|0;AS_VarDP=0|61|0;DP=61;QUALapprox=2734;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201618,61;VarDP=61 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,61,0:61:99:0|1:2918695_A_G:2734,184,0,2734,184,2734:2918695:0,0,22,39 +chrX 2918696 . T C, 2720.06 . AS_QUALapprox=|2734|0;AS_VarDP=0|61|0;DP=62;QUALapprox=2734;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205218,62;VarDP=61 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,61,0:61:99:0|1:2918695_A_G:2734,184,0,2734,184,2734:2918695:0,0,22,39 +chrX 2918697 . G . . END=2918745 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 2918746 . C T, 1886.06 . AS_QUALapprox=|1900|0;AS_VarDP=1|60|0;BaseQRankSum=2.110;DP=62;MQRankSum=-0.397;QUALapprox=1900;RAW_GT_COUNT=0,0,1;RAW_MQandDP=209528,62;ReadPosRankSum=-0.284;VarDP=61 GT:AD:DP:GQ:PL:SB 1/1:1,60,0:61:99:1900,173,0,1903,180,1910:0,1,25,35 +chrX 2918747 . A . . END=2919217 GT:DP:GQ:MIN_DP:PL 0/0:52:49:52:0,49,794 +chrX 2919218 . G GTCC, 952.03 . AS_QUALapprox=|966|0;AS_VarDP=0|22|0;DP=25;QUALapprox=966;RAW_GT_COUNT=0,0,1;RAW_MQandDP=38049,25;VarDP=22 GT:AD:DP:GQ:PL:SB 1/1:0,22,0:22:66:966,66,0,966,66,966:0,0,12,10 +chrX 2919219 . T . . END=2919249 GT:DP:GQ:MIN_DP:PL 0/0:23:34:21:0,34,630 +chrX 2919250 . A G, 744.06 . AS_QUALapprox=|758|0;AS_VarDP=0|23|0;DP=23;QUALapprox=758;RAW_GT_COUNT=0,0,1;RAW_MQandDP=40854,23;VarDP=23 GT:AD:DP:GQ:PL:SB 1/1:0,23,0:23:69:758,69,0,758,69,758:0,0,12,11 +chrX 2919251 . G . . END=2919316 GT:DP:GQ:MIN_DP:PL 0/0:26:32:23:0,32,690 +chrX 2919317 . G A, 629.64 . AS_QUALapprox=|637|0;AS_VarDP=21|24|0;BaseQRankSum=1.054;DP=45;MQRankSum=0.160;QUALapprox=637;RAW_GT_COUNT=0,1,0;RAW_MQandDP=128191,45;ReadPosRankSum=-1.804;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:21,24,0:45:99:637,0,533,700,605,1305:9,12,14,10 +chrX 2919318 . G . . END=2919395 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 2919396 . G A, 886.64 . AS_QUALapprox=|894|0;AS_VarDP=23|32|0;BaseQRankSum=-0.739;DP=55;MQRankSum=1.320;QUALapprox=894;RAW_GT_COUNT=0,1,0;RAW_MQandDP=146768,55;ReadPosRankSum=2.467;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:23,32,0:55:99:894,0,594,963,690,1653:6,17,22,10 +chrX 2919397 . G . . END=2919414 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 2919415 . A C, 2390.06 . AS_QUALapprox=|2404|0;AS_VarDP=0|63|0;DP=64;QUALapprox=2404;RAW_GT_COUNT=0,0,1;RAW_MQandDP=167838,64;VarDP=63 GT:AD:DP:GQ:PL:SB 1/1:0,63,0:63:99:2404,189,0,2404,189,2404:0,0,33,30 +chrX 2919416 . C . . END=2919699 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 2919700 . T C, 2437.06 . AS_QUALapprox=|2451|0;AS_VarDP=0|75|0;DP=76;QUALapprox=2451;RAW_GT_COUNT=0,0,1;RAW_MQandDP=272704,76;VarDP=75 GT:AD:DP:GQ:PL:SB 1/1:0,75,0:75:99:2451,225,0,2451,225,2451:0,0,38,37 +chrX 2919701 . C . . END=2919811 GT:DP:GQ:MIN_DP:PL 0/0:74:99:74:0,120,1800 +chrX 2919812 . TGTTGTTGAAA T, 2991.03 . AS_QUALapprox=|3005|0;AS_VarDP=0|67|0;DP=68;QUALapprox=3005;RAW_GT_COUNT=0,0,1;RAW_MQandDP=243904,68;VarDP=67 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,67,0:67:99:0|1:2919812_TGTTGTTGAAA_T:3005,202,0,3005,202,3005:2919812:0,0,33,34 +chrX 2919823 . C . . END=2919823 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 2919824 . TC T, 2991.03 . AS_QUALapprox=|3005|0;AS_VarDP=0|67|0;DP=67;QUALapprox=3005;RAW_GT_COUNT=0,0,1;RAW_MQandDP=240304,67;VarDP=67 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,67,0:67:99:0|1:2919812_TGTTGTTGAAA_T:3005,202,0,3005,202,3005:2919812:0,0,33,34 +chrX 2919826 . A . . END=2920982 GT:DP:GQ:MIN_DP:PL 0/0:66:55:66:0,55,966 +chrX 2920983 . T C, 1207.64 . AS_QUALapprox=|1215|0;AS_VarDP=39|44|0;BaseQRankSum=0.497;DP=85;MQRankSum=0.000;QUALapprox=1215;RAW_GT_COUNT=0,1,0;RAW_MQandDP=306000,85;ReadPosRankSum=-0.041;VarDP=83 GT:AD:DP:GQ:PL:SB 0/1:39,44,0:83:99:1215,0,1046,1332,1178,2510:15,24,18,26 +chrX 2920984 . G . . END=2922781 GT:DP:GQ:MIN_DP:PL 0/0:55:76:55:0,76,1087 +chrX 2922782 . A G, 1247.06 . AS_QUALapprox=|1261|0;AS_VarDP=1|38|0;BaseQRankSum=2.766;DP=40;MQRankSum=0.000;QUALapprox=1261;RAW_GT_COUNT=0,0,1;RAW_MQandDP=143001,40;ReadPosRankSum=0.533;VarDP=39 GT:AD:DP:GQ:PL:SB 1/1:1,38,0:39:99:1261,107,0,1264,114,1271:1,0,18,20 +chrX 2922783 . A . . END=2922841 GT:DP:GQ:MIN_DP:PL 0/0:39:72:39:0,72,903 +chrX 2922842 . CAAAAAAAAAAAAAAAAAAAAA C,CAAAAAAAAAAAAAAAAAA, 657.02 . AS_QUALapprox=|625|147|0;AS_VarDP=4|17|5|0;DP=46;MQRankSum=2.996;QUALapprox=674;RAW_GT_COUNT=0,0,1;RAW_MQandDP=155930,46;VarDP=26 GT:AD:DP:GQ:PL:SB 1/2:4,17,5,0:26:49:674,49,664,527,0,624,730,467,682,1100:0,4,16,6 +chrX 2922864 . A . . END=2922864 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,105,1575 +chrX 2922865 . A . . END=2922865 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,1097 +chrX 2922866 . A . . END=2922972 GT:DP:GQ:MIN_DP:PL 0/0:43:22:42:0,22,1130 +chrX 2922973 . CGTGAGGCACGGTACT C, 1312.60 . AS_QUALapprox=|1320|0;AS_VarDP=22|33|0;BaseQRankSum=-1.048;DP=59;MQRankSum=0.000;QUALapprox=1320;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=0.505;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:22,33,0:55:99:1320,0,824,1386,924,2310:14,8,17,16 +chrX 2922989 . G . . END=2923883 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,114,1529 +chrX 2923884 . C T, 544.64 . AS_QUALapprox=|552|0;AS_VarDP=40|24|0;BaseQRankSum=-0.969;DP=65;MQRankSum=-0.607;QUALapprox=552;RAW_GT_COUNT=0,1,0;RAW_MQandDP=197516,65;ReadPosRankSum=0.576;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:40,24,0:64:99:552,0,1119,673,1190,1863:19,21,11,13 +chrX 2923885 . A . . END=2923902 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 2923903 . T C, 488.64 . AS_QUALapprox=|496|0;AS_VarDP=38|23|0;BaseQRankSum=-1.423;DP=62;MQRankSum=-0.903;QUALapprox=496;RAW_GT_COUNT=0,1,0;RAW_MQandDP=186716,62;ReadPosRankSum=1.288;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:38,23,0:61:99:496,0,1048,611,1117,1727:16,22,9,14 +chrX 2923904 . G . . END=2924811 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,101,1741 +chrX 2924812 . G A, 1000.64 . AS_QUALapprox=|1008|0;AS_VarDP=25|36|0;BaseQRankSum=0.341;DP=62;MQRankSum=-3.938;QUALapprox=1008;RAW_GT_COUNT=0,1,0;RAW_MQandDP=202056,62;ReadPosRankSum=-0.374;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:25,36,0:61:99:1008,0,636,1083,744,1827:10,15,19,17 +chrX 2924813 . C . . END=2925097 GT:DP:GQ:MIN_DP:PL 0/0:60:79:60:0,79,1430 +chrX 2925098 . T C, 636.64 . AS_QUALapprox=|644|0;AS_VarDP=39|26|0;BaseQRankSum=0.337;DP=68;MQRankSum=0.000;QUALapprox=644;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=1.132;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:39,26,0:65:99:644,0,1056,761,1134,1894:19,20,10,16 +chrX 2925099 . G . . END=2925210 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,111,1665 +chrX 2925211 . A G, 491.64 . AS_QUALapprox=|499|0;AS_VarDP=23|19|0;BaseQRankSum=-1.924;DP=45;MQRankSum=-1.052;QUALapprox=499;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158147,45;ReadPosRankSum=1.783;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:23,19,0:42:99:499,0,673,568,730,1298:11,12,11,8 +chrX 2925212 . G . . END=2927239 GT:DP:GQ:MIN_DP:PL 0/0:57:56:57:0,56,1102 +chrX 2927240 . C CT, 453.60 . AS_QUALapprox=|461|0;AS_VarDP=23|21|0;BaseQRankSum=-0.370;DP=52;MQRankSum=0.000;QUALapprox=461;RAW_GT_COUNT=0,1,0;RAW_MQandDP=185200,52;ReadPosRankSum=-0.729;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:23,21,0:44:99:461,0,517,530,580,1110:12,11,12,9 +chrX 2927241 . T . . END=2928297 GT:DP:GQ:MIN_DP:PL 0/0:38:26:32:0,26,872 +chrX 2928298 . C . . END=2928300 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,509 +chrX 2928301 . G . . END=2928306 GT:DP:GQ:MIN_DP:PL 0/0:42:87:42:0,87,1311 +chrX 2928307 . T . . END=2928307 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,710 +chrX 2928308 . G . . END=2928308 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1077 +chrX 2928309 . A . . END=2928311 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,496 +chrX 2928312 . G . . END=2928315 GT:DP:GQ:MIN_DP:PL 0/0:36:90:36:0,90,962 +chrX 2928316 . T . . END=2928317 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,537 +chrX 2928318 . G . . END=2928320 GT:DP:GQ:MIN_DP:PL 0/0:28:28:26:0,28,704 +chrX 2928321 . A . . END=2928322 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,518 +chrX 2928323 . G . . END=2928324 GT:DP:GQ:MIN_DP:PL 0/0:37:93:37:0,93,1395 +chrX 2928325 . C . . END=2928325 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,555 +chrX 2928326 . G . . END=2928327 GT:DP:GQ:MIN_DP:PL 0/0:37:77:37:0,77,1072 +chrX 2928328 . T . . END=2928328 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,625 +chrX 2928329 . G . . END=2928329 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +chrX 2928330 . C . . END=2928331 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,363 +chrX 2928332 . G . . END=2928337 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1022 +chrX 2928338 . A . . END=2928338 GT:DP:GQ:MIN_DP:PL 0/0:27:0:27:0,0,372 +chrX 2928339 . G . . END=2928345 GT:DP:GQ:MIN_DP:PL 0/0:28:27:22:0,27,545 +chrX 2928346 . C . . END=2928346 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,613 +chrX 2928347 . A . . END=2928348 GT:DP:GQ:MIN_DP:PL 0/0:31:47:31:0,47,768 +chrX 2928349 . T . . END=2928349 GT:DP:GQ:MIN_DP:PL 0/0:25:0:25:0,0,462 +chrX 2928350 . G . . END=2928357 GT:DP:GQ:MIN_DP:PL 0/0:28:33:26:0,33,673 +chrX 2928358 . C . . END=2928358 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,317 +chrX 2928359 . G . . END=2928416 GT:DP:GQ:MIN_DP:PL 0/0:34:26:32:0,26,754 +chrX 2928417 . A . . END=2928417 GT:DP:GQ:MIN_DP:PL 0/0:33:15:33:0,15,888 +chrX 2928418 . G . . END=2928420 GT:DP:GQ:MIN_DP:PL 0/0:33:70:33:0,70,854 +chrX 2928421 . T . . END=2928421 GT:DP:GQ:MIN_DP:PL 0/0:32:2:32:0,2,823 +chrX 2928422 . G . . END=2928453 GT:DP:GQ:MIN_DP:PL 0/0:26:49:26:0,49,705 +chrX 2928454 . T . . END=2928454 GT:DP:GQ:MIN_DP:PL 0/0:24:0:24:0,0,555 +chrX 2928455 . G . . END=2928457 GT:DP:GQ:MIN_DP:PL 0/0:27:60:27:0,60,900 +chrX 2928458 . A . . END=2928459 GT:DP:GQ:MIN_DP:PL 0/0:23:0:23:0,0,430 +chrX 2928460 . G . . END=2928460 GT:DP:GQ:MIN_DP:PL 0/0:23:34:23:0,34,649 +chrX 2928461 . A . . END=2928462 GT:DP:GQ:MIN_DP:PL 0/0:26:0:26:0,0,533 +chrX 2928463 . G . . END=2928466 GT:DP:GQ:MIN_DP:PL 0/0:24:40:24:0,40,770 +chrX 2928467 . A . . END=2928467 GT:DP:GQ:MIN_DP:PL 0/0:23:0:23:0,0,551 +chrX 2928468 . G . . END=2928471 GT:DP:GQ:MIN_DP:PL 0/0:23:28:21:0,28,640 +chrX 2928472 . A . . END=2928472 GT:DP:GQ:MIN_DP:PL 0/0:22:0:22:0,0,536 +chrX 2928473 . C . . END=2928473 GT:DP:GQ:MIN_DP:PL 0/0:21:60:21:0,60,900 +chrX 2928474 . A . . END=2928474 GT:DP:GQ:MIN_DP:PL 0/0:23:10:23:0,10,610 +chrX 2928475 . G . . END=2928475 GT:DP:GQ:MIN_DP:PL 0/0:25:63:25:0,63,945 +chrX 2928476 . C . . END=2928477 GT:DP:GQ:MIN_DP:PL 0/0:24:0:24:0,0,595 +chrX 2928478 . G . . END=2928478 GT:DP:GQ:MIN_DP:PL 0/0:22:31:22:0,31,655 +chrX 2928479 . T . . END=2928479 GT:DP:GQ:MIN_DP:PL 0/0:24:13:24:0,13,655 +chrX 2928480 . G . . END=2928480 GT:DP:GQ:MIN_DP:PL 0/0:24:66:24:0,66,990 +chrX 2928481 . C . . END=2928482 GT:DP:GQ:MIN_DP:PL 0/0:23:2:23:0,2,581 +chrX 2928483 . G . . END=2928491 GT:DP:GQ:MIN_DP:PL 0/0:22:44:22:0,44,690 +chrX 2928492 . A . . END=2928493 GT:DP:GQ:MIN_DP:PL 0/0:24:0:24:0,0,567 +chrX 2928494 . G . . END=2928496 GT:DP:GQ:MIN_DP:PL 0/0:25:60:25:0,60,900 +chrX 2928497 . C . . END=2928498 GT:DP:GQ:MIN_DP:PL 0/0:26:0:26:0,0,546 +chrX 2928499 . G . . END=2928504 GT:DP:GQ:MIN_DP:PL 0/0:25:66:25:0,66,780 +chrX 2928505 . C . . END=2928505 GT:DP:GQ:MIN_DP:PL 0/0:23:0:23:0,0,383 +chrX 2928506 . G . . END=2928508 GT:DP:GQ:MIN_DP:PL 0/0:24:66:24:0,66,745 +chrX 2928509 . A . . END=2928510 GT:DP:GQ:MIN_DP:PL 0/0:23:0:23:0,0,458 +chrX 2928511 . G . . END=2928515 GT:DP:GQ:MIN_DP:PL 0/0:23:24:21:0,24,571 +chrX 2928516 . A . . END=2928516 GT:DP:GQ:MIN_DP:PL 0/0:23:0:23:0,0,472 +chrX 2928517 . T . . END=2928520 GT:DP:GQ:MIN_DP:PL 0/0:23:30:22:0,30,575 +chrX 2928521 . A . . END=2928522 GT:DP:GQ:MIN_DP:PL 0/0:25:0:25:0,0,432 +chrX 2928523 . G . . END=2928524 GT:DP:GQ:MIN_DP:PL 0/0:28:72:28:0,72,1080 +chrX 2928525 . T . . END=2928525 GT:DP:GQ:MIN_DP:PL 0/0:26:0:26:0,0,318 +chrX 2928526 . G . . END=2928535 GT:DP:GQ:MIN_DP:PL 0/0:21:29:15:0,29,452 +chrX 2928536 . A . . END=2928536 GT:DP:GQ:MIN_DP:PL 0/0:25:0:25:0,0,382 +chrX 2928537 . G . . END=2928538 GT:DP:GQ:MIN_DP:PL 0/0:29:73:29:0,73,868 +chrX 2928539 . C . . END=2928539 GT:DP:GQ:MIN_DP:PL 0/0:25:0:25:0,0,423 +chrX 2928540 . G . . END=2928545 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,950 +chrX 2928546 . C . . END=2928546 GT:DP:GQ:MIN_DP:PL 0/0:29:0:29:0,0,432 +chrX 2928547 . G . . END=2928623 GT:DP:GQ:MIN_DP:PL 0/0:35:47:35:0,47,928 +chrX 2928624 . G C, 318.64 . AS_QUALapprox=|326|0;AS_VarDP=15|12|0;BaseQRankSum=-1.043;DP=31;MQRankSum=0.000;QUALapprox=326;RAW_GT_COUNT=0,1,0;RAW_MQandDP=111600,31;ReadPosRankSum=1.001;VarDP=27 GT:AD:DP:GQ:PL:SB 0/1:15,12,0:27:99:326,0,440,371,476,847:11,4,8,4 +chrX 2928625 . C . . END=2928660 GT:DP:GQ:MIN_DP:PL 0/0:24:53:24:0,53,780 +chrX 2928661 . A G, 499.64 . AS_QUALapprox=|507|0;AS_VarDP=12|14|0;BaseQRankSum=0.881;DP=30;MQRankSum=0.000;QUALapprox=507;RAW_GT_COUNT=0,1,0;RAW_MQandDP=108000,30;ReadPosRankSum=0.515;VarDP=26 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:12,14,0:26:99:0|1:2928661_A_G:507,0,399,543,441,984:2928661:10,2,12,2 +chrX 2928662 . G . . END=2928671 GT:DP:GQ:MIN_DP:PL 0/0:23:60:23:0,60,900 +chrX 2928672 . TG T, 466.60 . AS_QUALapprox=|474|0;AS_VarDP=12|13|0;BaseQRankSum=-0.530;DP=32;MQRankSum=0.000;QUALapprox=474;RAW_GT_COUNT=0,1,0;RAW_MQandDP=115200,32;ReadPosRankSum=0.844;VarDP=25 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:12,13,0:25:99:0|1:2928661_A_G:474,0,400,509,439,948:2928661:11,1,13,0 +chrX 2928674 . G . . END=2928679 GT:DP:GQ:MIN_DP:PL 0/0:36:50:36:0,50,847 +chrX 2928680 . T . . END=2928680 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,625 +chrX 2928681 . G . . END=2928685 GT:DP:GQ:MIN_DP:PL 0/0:38:93:38:0,93,1395 +chrX 2928686 . C . . END=2928686 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,794 +chrX 2928687 . G . . END=2928690 GT:DP:GQ:MIN_DP:PL 0/0:36:54:36:0,54,1003 +chrX 2928691 . C . . END=2928691 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,773 +chrX 2928692 . G . . END=2928700 GT:DP:GQ:MIN_DP:PL 0/0:31:38:29:0,38,839 +chrX 2928701 . C . . END=2928701 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,830 +chrX 2928702 . T . . END=2928703 GT:DP:GQ:MIN_DP:PL 0/0:29:54:29:0,54,859 +chrX 2928704 . A . . END=2928704 GT:DP:GQ:MIN_DP:PL 0/0:29:17:29:0,17,788 +chrX 2928705 . G . . END=2928707 GT:DP:GQ:MIN_DP:PL 0/0:33:60:33:0,60,989 +chrX 2928708 . A . . END=2928708 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,636 +chrX 2928709 . G . . END=2928709 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +chrX 2928710 . T . . END=2928710 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,561 +chrX 2928711 . G . . END=2928714 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1077 +chrX 2928715 . C . . END=2928715 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,735 +chrX 2928716 . G . . END=2928720 GT:DP:GQ:MIN_DP:PL 0/0:34:34:28:0,34,783 +chrX 2928721 . A . . END=2928721 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,832 +chrX 2928722 . G . . END=2928730 GT:DP:GQ:MIN_DP:PL 0/0:31:37:29:0,37,848 +chrX 2928731 . T . . END=2928732 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,556 +chrX 2928733 . G . . END=2928738 GT:DP:GQ:MIN_DP:PL 0/0:35:43:35:0,43,816 +chrX 2928739 . T . . END=2928739 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,794 +chrX 2928740 . G . . END=2928741 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,102,1530 +chrX 2928742 . A . . END=2928742 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,707 +chrX 2928743 . G . . END=2928743 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,993 +chrX 2928744 . C . . END=2928744 GT:DP:GQ:MIN_DP:PL 0/0:29:18:29:0,18,839 +chrX 2928745 . C . . END=2928746 GT:DP:GQ:MIN_DP:PL 0/0:34:42:34:0,42,904 +chrX 2928747 . T . . END=2928747 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,571 +chrX 2928748 . G . . END=2928751 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,111,1250 +chrX 2928752 . C . . END=2928752 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,618 +chrX 2928753 . G . . END=2928756 GT:DP:GQ:MIN_DP:PL 0/0:39:41:39:0,41,978 +chrX 2928757 . C . . END=2928757 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,716 +chrX 2928758 . G . . END=2928768 GT:DP:GQ:MIN_DP:PL 0/0:42:33:37:0,33,1017 +chrX 2928769 . T . . END=2928770 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,868 +chrX 2928771 . G . . END=2928771 GT:DP:GQ:MIN_DP:PL 0/0:44:97:44:0,97,1369 +chrX 2928772 . T . . END=2928772 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,815 +chrX 2928773 . G . . END=2928779 GT:DP:GQ:MIN_DP:PL 0/0:45:35:38:0,35,1002 +chrX 2928780 . A . . END=2928780 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,846 +chrX 2928781 . G . . END=2928781 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,120,1800 +chrX 2928782 . C . . END=2928782 GT:DP:GQ:MIN_DP:PL 0/0:34:4:34:0,4,854 +chrX 2928783 . G . . END=2928975 GT:DP:GQ:MIN_DP:PL 0/0:45:55:45:0,55,1080 +chrX 2928976 . T C, 643.64 . AS_QUALapprox=|651|0;AS_VarDP=18|25|0;BaseQRankSum=-1.017;DP=44;MQRankSum=0.000;QUALapprox=651;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=0.333;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:18,25,0:43:99:651,0,463,704,537,1241:12,6,11,14 +chrX 2928977 . C . . END=2929091 GT:DP:GQ:MIN_DP:PL 0/0:52:64:52:0,64,1100 +chrX 2929092 . A G, 838.64 . AS_QUALapprox=|846|0;AS_VarDP=26|32|0;BaseQRankSum=-2.209;DP=60;MQRankSum=0.000;QUALapprox=846;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=-0.798;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:26,32,0:58:99:846,0,728,924,823,1747:16,10,16,16 +chrX 2929093 . G . . END=2929115 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 2929116 . C G, 725.64 . AS_QUALapprox=|733|0;AS_VarDP=29|29|0;BaseQRankSum=-2.174;DP=60;MQRankSum=0.000;QUALapprox=733;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=1.012;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:29,29,0:58:99:733,0,804,821,891,1712:19,10,16,13 +chrX 2929117 . A . . END=2930367 GT:DP:GQ:MIN_DP:PL 0/0:52:61:52:0,61,1145 +chrX 2930368 . T C, 1338.06 . AS_QUALapprox=|1352|0;AS_VarDP=0|43|0;DP=44;QUALapprox=1352;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158400,44;VarDP=43 GT:AD:DP:GQ:PL:SB 1/1:0,43,0:43:99:1352,127,0,1352,127,1352:0,0,20,23 +chrX 2930369 . C . . END=2930466 GT:DP:GQ:MIN_DP:PL 0/0:49:97:49:0,97,1369 +chrX 2930467 . T C, 1728.06 . AS_QUALapprox=|1742|0;AS_VarDP=0|54|0;DP=55;QUALapprox=1742;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:1742,162,0,1742,162,1742:0,0,26,28 +chrX 2930468 . C . . END=2930793 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,109,1409 +chrX 2930794 . C G, 1783.06 . AS_QUALapprox=|1797|0;AS_VarDP=1|55|0;BaseQRankSum=-0.388;DP=58;MQRankSum=0.000;QUALapprox=1797;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;ReadPosRankSum=-1.455;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:1,55,0:56:99:1797,133,0,1800,165,1831:1,0,30,25 +chrX 2930795 . C . . END=2931595 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,116,1713 +chrX 2931596 . T C, 2319.06 . AS_QUALapprox=|2333|0;AS_VarDP=0|73|0;DP=73;QUALapprox=2333;RAW_GT_COUNT=0,0,1;RAW_MQandDP=262800,73;VarDP=73 GT:AD:DP:GQ:PL:SB 1/1:0,73,0:73:99:2333,219,0,2333,219,2333:0,0,33,40 +chrX 2931597 . G . . END=2931717 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 2931718 . T TA, 1529.03 . AS_QUALapprox=|1543|0;AS_VarDP=0|51|0;DP=61;QUALapprox=1543;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1543,153,0,1543,153,1543:0,0,26,25 +chrX 2931719 . A . . END=2931939 GT:DP:GQ:MIN_DP:PL 0/0:58:74:58:0,74,1295 +chrX 2931940 . C T, 1322.06 . AS_QUALapprox=|1336|0;AS_VarDP=0|39|0;DP=46;QUALapprox=1336;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;VarDP=39 GT:AD:DP:GQ:PL:SB 1/1:0,39,0:39:99:1336,117,0,1336,117,1336:0,0,15,24 +chrX 2931941 . T . . END=2932264 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,111,1542 +chrX 2932265 . G C, 2174.06 . AS_QUALapprox=|2188|0;AS_VarDP=1|67|0;BaseQRankSum=2.616;DP=68;MQRankSum=0.000;QUALapprox=2188;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;ReadPosRankSum=-1.478;VarDP=68 GT:AD:DP:GQ:PL:SB 1/1:1,67,0:68:99:2188,194,0,2190,201,2197:0,1,38,29 +chrX 2932266 . G . . END=2932377 GT:DP:GQ:MIN_DP:PL 0/0:77:20:73:0,20,1800 +chrX 2932378 . T . . END=2932378 GT:DP:GQ:MIN_DP:PL 0/0:76:0:76:0,0,1916 +chrX 2932379 . T . . END=2932380 GT:DP:GQ:MIN_DP:PL 0/0:77:99:77:0,120,1800 +chrX 2932381 . T . . END=2932383 GT:DP:GQ:MIN_DP:PL 0/0:76:0:76:0,0,1757 +chrX 2932384 . T . . END=2932384 GT:DP:GQ:MIN_DP:PL 0/0:77:99:77:0,120,1800 +chrX 2932385 . T . . END=2932385 GT:DP:GQ:MIN_DP:PL 0/0:77:0:77:0,0,1740 +chrX 2932386 . C . . END=2932388 GT:DP:GQ:MIN_DP:PL 0/0:77:99:77:0,120,1800 +chrX 2932389 . T . . END=2932391 GT:DP:GQ:MIN_DP:PL 0/0:74:0:74:0,0,1494 +chrX 2932392 . T TTTGC, 2865.03 . AS_QUALapprox=|2879|0;AS_VarDP=0|66|0;DP=71;QUALapprox=2879;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;VarDP=66 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,66,0:66:99:0|1:2932392_T_TTTGC:2879,197,0,2880,198,2880:2932392:0,0,31,35 +chrX 2932393 . T . . END=2932401 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 2932402 . T TCTTTTTCCTTCCTG, 3234.03 . AS_QUALapprox=|3248|0;AS_VarDP=0|77|0;DP=78;QUALapprox=3248;RAW_GT_COUNT=0,0,1;RAW_MQandDP=280800,78;VarDP=77 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,77,0:77:99:0|1:2932392_T_TTTGC:3248,231,0,3248,231,3248:2932392:0,0,35,42 +chrX 2932403 . C . . END=2932487 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 2932488 . G A, 2263.06 . AS_QUALapprox=|2277|0;AS_VarDP=0|68|0;DP=68;QUALapprox=2277;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;VarDP=68 GT:AD:DP:GQ:PL:SB 1/1:0,68,0:68:99:2277,204,0,2277,204,2277:0,0,33,35 +chrX 2932489 . A . . END=2932759 GT:DP:GQ:MIN_DP:PL 0/0:60:67:60:0,67,1568 +chrX 2932760 . G C, 1935.06 . AS_QUALapprox=|1949|0;AS_VarDP=0|60|0;DP=60;QUALapprox=1949;RAW_GT_COUNT=0,0,1;RAW_MQandDP=215090,60;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:1949,179,0,1949,179,1949:0,0,23,37 +chrX 2932761 . T . . END=2932859 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 2932860 . A G, 1762.06 . AS_QUALapprox=|1776|0;AS_VarDP=0|56|0;DP=57;QUALapprox=1776;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1776,167,0,1776,167,1776:0,0,27,29 +chrX 2932861 . G . . END=2934214 GT:DP:GQ:MIN_DP:PL 0/0:66:48:66:0,48,1500 +chrX 2934215 . C CT, 220.60 . AS_QUALapprox=|228|0;AS_VarDP=6|17|0;BaseQRankSum=-0.871;DP=49;MQRankSum=-0.495;QUALapprox=228;RAW_GT_COUNT=0,1,0;RAW_MQandDP=171936,49;ReadPosRankSum=-0.175;VarDP=23 GT:AD:DP:GQ:PL:SB 0/1:6,17,0:23:52:228,0,52,246,101,347:3,3,8,9 +chrX 2934216 . T . . END=2934237 GT:DP:GQ:MIN_DP:PL 0/0:51:84:51:0,84,1260 +chrX 2934238 . G . . END=2934239 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,908 +chrX 2934240 . T . . END=2934909 GT:DP:GQ:MIN_DP:PL 0/0:43:29:41:0,29,1146 +chrX 2934910 . G A, 2132.06 . AS_QUALapprox=|2146|0;AS_VarDP=0|70|0;DP=72;QUALapprox=2146;RAW_GT_COUNT=0,0,1;RAW_MQandDP=243727,72;VarDP=70 GT:AD:DP:GQ:PL:SB 1/1:0,70,0:70:99:2146,208,0,2146,208,2146:0,0,42,28 +chrX 2934911 . T . . END=2935104 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,104,1470 +chrX 2935105 . C T, 854.64 . AS_QUALapprox=|862|0;AS_VarDP=24|31|0;BaseQRankSum=2.101;DP=56;MQRankSum=0.235;QUALapprox=862;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201013,56;ReadPosRankSum=0.790;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:24,31,0:55:99:862,0,569,934,662,1596:10,14,16,15 +chrX 2935106 . G . . END=2935667 GT:DP:GQ:MIN_DP:PL 0/0:61:81:61:0,81,1485 +chrX 2935668 . T . . END=2935677 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,1063 +chrX 2935678 . T . . END=2935685 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,102,1530 +chrX 2935686 . TC T, 1363.03 . AS_QUALapprox=|1377|0;AS_VarDP=0|34|0;DP=41;QUALapprox=1377;RAW_GT_COUNT=0,0,1;RAW_MQandDP=141600,41;VarDP=34 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,34,0:34:99:0|1:2935686_TC_T:1377,102,0,1377,102,1377:2935686:0,0,15,19 +chrX 2935688 . TTTTC T, 1363.03 . AS_QUALapprox=|1377|0;AS_VarDP=0|34|0;DP=42;QUALapprox=1377;RAW_GT_COUNT=0,0,1;RAW_MQandDP=145200,42;VarDP=34 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,34,0:34:99:0|1:2935686_TC_T:1377,102,0,1377,102,1378:2935686:0,0,15,19 +chrX 2935693 . T . . END=2935707 GT:DP:GQ:MIN_DP:PL 0/0:44:63:44:0,63,945 +chrX 2935708 . A . . END=2935708 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,748 +chrX 2935709 . T . . END=2937391 GT:DP:GQ:MIN_DP:PL 0/0:40:67:38:0,67,974 +chrX 2937392 . T . . END=2937392 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,997 +chrX 2937393 . C . . END=2938113 GT:DP:GQ:MIN_DP:PL 0/0:50:20:43:0,20,1116 +chrX 2938114 . C T, 2027.06 . AS_QUALapprox=|2041|0;AS_VarDP=0|59|0;DP=63;QUALapprox=2041;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:2041,177,0,2041,177,2041:0,0,35,24 +chrX 2938115 . G . . END=2938379 GT:DP:GQ:MIN_DP:PL 0/0:67:66:67:0,66,1468 +chrX 2938380 . T TTC, 1352.03 . AS_QUALapprox=|1366|0;AS_VarDP=0|39|0;DP=49;QUALapprox=1366;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=39 GT:AD:DP:GQ:PL:SB 1/1:0,39,0:39:99:1366,117,0,1367,117,1367:0,0,20,19 +chrX 2938381 . T . . END=2939771 GT:DP:GQ:MIN_DP:PL 0/0:56:36:40:0,36,1102 +chrX 2939772 . C A, 1818.06 . AS_QUALapprox=|1832|0;AS_VarDP=0|55|0;DP=55;QUALapprox=1832;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1832,165,0,1832,165,1832:0,0,28,27 +chrX 2939773 . A . . END=2939861 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,115,1757 +chrX 2939862 . A . . END=2939862 GT:DP:GQ:MIN_DP:PL 0/0:63:0:63:0,0,1442 +chrX 2939863 . C . . END=2939863 GT:DP:GQ:MIN_DP:PL 0/0:66:34:66:0,34,1775 +chrX 2939864 . CTT C, 433.61 . AS_QUALapprox=|441|0;AS_VarDP=4|20|0;BaseQRankSum=-0.509;DP=58;MQRankSum=0.358;QUALapprox=441;RAW_GT_COUNT=0,1,0;RAW_MQandDP=197380,58;ReadPosRankSum=0.077;VarDP=24 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:4,20,0:24:18:0|1:2939864_CTT_C:441,0,18,453,76,530:2939864:4,0,4,16 +chrX 2939867 . T . . END=2941246 GT:DP:GQ:MIN_DP:PL 0/0:53:41:49:0,41,909 +chrX 2941247 . CTTTTTTTTTT C, 1369.03 . AS_QUALapprox=|1383|0;AS_VarDP=2|34|0;BaseQRankSum=-0.361;DP=47;MQRankSum=4.244;QUALapprox=1383;RAW_GT_COUNT=0,0,1;RAW_MQandDP=166276,47;ReadPosRankSum=0.864;VarDP=36 GT:AD:DP:GQ:PL:SB 1/1:2,34,0:36:41:1383,41,0,1389,103,1452:2,0,17,17 +chrX 2941258 . T . . END=2941262 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,114,1710 +chrX 2941263 . T . . END=2941264 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,1236 +chrX 2941265 . T . . END=2942400 GT:DP:GQ:MIN_DP:PL 0/0:46:31:46:0,31,1269 +chrX 2942401 . T C, 2532.06 . AS_QUALapprox=|2546|0;AS_VarDP=0|59|0;DP=60;QUALapprox=2546;RAW_GT_COUNT=0,0,1;RAW_MQandDP=213275,60;VarDP=59 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,59,0:59:99:0|1:2942401_T_C:2546,178,0,2546,178,2546:2942401:0,0,37,22 +chrX 2942402 . C . . END=2942415 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 2942416 . T C, 2438.06 . AS_QUALapprox=|2452|0;AS_VarDP=0|57|0;DP=59;QUALapprox=2452;RAW_GT_COUNT=0,0,1;RAW_MQandDP=209675,59;VarDP=57 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,57,0:57:99:0|1:2942401_T_C:2452,171,0,2452,171,2452:2942401:0,0,35,22 +chrX 2942417 . G . . END=2943417 GT:DP:GQ:MIN_DP:PL 0/0:53:82:53:0,82,1226 +chrX 2943418 . G C, 1285.06 . AS_QUALapprox=|1299|0;AS_VarDP=0|39|0;DP=42;QUALapprox=1299;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151200,42;VarDP=39 GT:AD:DP:GQ:PL:SB 1/1:0,39,0:39:99:1299,117,0,1299,117,1299:0,0,21,18 +chrX 2943419 . T . . END=2943738 GT:DP:GQ:MIN_DP:PL 0/0:28:32:27:0,32,704 +chrX 2943739 . C . . END=2943740 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,654 +chrX 2943741 . C CA, 117.62 . AS_QUALapprox=|125|0;AS_VarDP=3|12|0;BaseQRankSum=-0.319;DP=33;MQRankSum=0.728;QUALapprox=125;RAW_GT_COUNT=0,1,0;RAW_MQandDP=108800,33;ReadPosRankSum=0.797;VarDP=15 GT:AD:DP:GQ:PL:SB 0/1:3,12,0:15:13:125,0,13,134,47,181:3,0,5,7 +chrX 2943742 . A . . END=2943771 GT:DP:GQ:MIN_DP:PL 0/0:49:69:49:0,69,1035 +chrX 2943772 . G . . END=2943772 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,1176 +chrX 2943773 . T . . END=2944452 GT:DP:GQ:MIN_DP:PL 0/0:41:38:36:0,38,943 +chrX 2944453 . C . . END=2944453 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,1190 +chrX 2944454 . A . . END=2944472 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,99,1737 +chrX 2944473 . CAA C, 1779.03 . AS_QUALapprox=|1793|0;AS_VarDP=0|48|0;DP=53;QUALapprox=1793;RAW_GT_COUNT=0,0,1;RAW_MQandDP=189601,53;VarDP=48 GT:AD:DP:GQ:PL:SB 1/1:0,48,0:48:99:1793,145,0,1793,145,1793:0,0,20,28 +chrX 2944476 . A . . END=2944484 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 2944485 . A . . END=2944485 GT:DP:GQ:MIN_DP:PL 0/0:55:12:55:0,12,1504 +chrX 2944486 . A . . END=2944679 GT:DP:GQ:MIN_DP:PL 0/0:45:55:45:0,55,1111 +chrX 2944680 . T C, 1361.06 . AS_QUALapprox=|1375|0;AS_VarDP=0|41|0;DP=42;QUALapprox=1375;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151200,42;VarDP=41 GT:AD:DP:GQ:PL:SB 1/1:0,41,0:41:99:1375,123,0,1375,123,1375:0,0,24,17 +chrX 2944681 . T . . END=2946321 GT:DP:GQ:MIN_DP:PL 0/0:57:62:57:0,62,1170 +chrX 2946322 . CTTTTTTTTT C, 736.02 . AS_QUALapprox=|750|0;AS_VarDP=3|23|0;BaseQRankSum=-0.434;DP=37;MQRankSum=-0.241;QUALapprox=750;RAW_GT_COUNT=0,0,1;RAW_MQandDP=132516,37;ReadPosRankSum=-0.080;VarDP=26 GT:AD:DP:GQ:PL:SB 1/1:3,23,0:26:33:750,33,0,758,69,794:3,0,13,10 +chrX 2946332 . T . . END=2946338 GT:DP:GQ:MIN_DP:PL 0/0:28:63:28:0,63,945 +chrX 2946339 . T . . END=2946347 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,720 +chrX 2946348 . G . . END=2946504 GT:DP:GQ:MIN_DP:PL 0/0:45:39:42:0,39,1204 +chrX 2946505 . AT A, 176.60 . AS_QUALapprox=|184|0;AS_VarDP=10|13|0;BaseQRankSum=-0.874;DP=40;MQRankSum=-1.258;QUALapprox=184;RAW_GT_COUNT=0,1,0;RAW_MQandDP=116158,40;ReadPosRankSum=0.935;VarDP=23 GT:AD:DP:GQ:PL:SB 0/1:10,13,0:23:72:184,0,72,212,111,323:9,1,0,13 +chrX 2946507 . T . . END=2946532 GT:DP:GQ:MIN_DP:PL 0/0:49:51:49:0,51,765 +chrX 2946533 . G . . END=2946533 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,755 +chrX 2946534 . T . . END=2947254 GT:DP:GQ:MIN_DP:PL 0/0:56:46:56:0,46,966 +chrX 2947255 . G T, 1971.06 . AS_QUALapprox=|1985|0;AS_VarDP=0|59|0;DP=60;QUALapprox=1985;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1985,177,0,1985,177,1985:0,0,33,26 +chrX 2947256 . T . . END=2947888 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,114,1594 +chrX 2947889 . A G, 2138.06 . AS_QUALapprox=|2152|0;AS_VarDP=1|68|0;BaseQRankSum=1.679;DP=69;MQRankSum=8.367;QUALapprox=2152;RAW_GT_COUNT=0,0,1;RAW_MQandDP=245425,69;ReadPosRankSum=-0.151;VarDP=69 GT:AD:DP:GQ:PL:SB 1/1:1,68,0:69:99:2152,182,0,2155,204,2177:0,1,42,26 +chrX 2947890 . A . . END=2949000 GT:DP:GQ:MIN_DP:PL 0/0:66:80:66:0,80,1466 +chrX 2949001 . C A, 1568.06 . AS_QUALapprox=|1582|0;AS_VarDP=0|47|0;DP=48;QUALapprox=1582;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1582,141,0,1582,141,1582:0,0,26,21 +chrX 2949002 . A . . END=2949371 GT:DP:GQ:MIN_DP:PL 0/0:56:75:56:0,75,1300 +chrX 2949372 . C T, 618.64 . AS_QUALapprox=|626|0;AS_VarDP=28|23|0;BaseQRankSum=0.953;DP=54;MQRankSum=0.000;QUALapprox=626;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=0.568;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:28,23,0:51:99:626,0,769,710,838,1548:16,12,10,13 +chrX 2949373 . G . . END=2950512 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,100,1340 +chrX 2950513 . A G, 697.64 . AS_QUALapprox=|705|0;AS_VarDP=27|27|0;BaseQRankSum=-0.637;DP=56;MQRankSum=0.000;QUALapprox=705;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-0.069;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:27,27,0:54:99:705,0,726,786,807,1593:16,11,10,17 +chrX 2950514 . T . . END=2951611 GT:DP:GQ:MIN_DP:PL 0/0:52:52:52:0,52,894 +chrX 2951612 . T . . END=2951612 GT:DP:GQ:MIN_DP:PL 0/0:32:12:32:0,12,863 +chrX 2951613 . A . . END=2951613 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,99,1485 +chrX 2951614 . C A,CAAAAAAAAA, 161.60 . AS_QUALapprox=|113|169|0;AS_VarDP=16|3|3|0;BaseQRankSum=-1.058;DP=47;MQRankSum=-2.905;QUALapprox=169;RAW_GT_COUNT=0,1,0;RAW_MQandDP=153716,47;ReadPosRankSum=-0.701;VarDP=22 GT:AD:DP:GQ:PL:SB 0/2:16,3,3,0:22:56:169,56,812,0,361,541,195,675,531,833:14,2,2,4 +chrX 2951615 . A . . END=2951799 GT:DP:GQ:MIN_DP:PL 0/0:44:64:44:0,64,976 +chrX 2951800 . TAA T,TA, 257.60 . AS_QUALapprox=|265|206|0;AS_VarDP=16|10|8|0;BaseQRankSum=0.725;DP=47;MQRankSum=0.000;QUALapprox=265;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=-0.723;VarDP=34 GT:AD:DP:GQ:PL:SB 0/1:16,10,8,0:34:59:265,0,571,59,191,343,297,503,427,740:9,7,8,10 +chrX 2951803 . A . . END=2951873 GT:DP:GQ:MIN_DP:PL 0/0:46:94:46:0,94,1261 +chrX 2951874 . GTTTTTTT G,TTTTTTTT, 842.60 . AS_QUALapprox=|850|0|0;AS_VarDP=17|22|3|0;BaseQRankSum=1.074;DP=50;MQRankSum=0.000;QUALapprox=850;RAW_GT_COUNT=0,1,0;RAW_MQandDP=178704,50;ReadPosRankSum=-0.885;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:17,22,3,0:42:99:850,0,774,881,437,1403,925,684,1404,1599:9,8,8,17 +chrX 2951882 . T . . END=2952271 GT:DP:GQ:MIN_DP:PL 0/0:47:56:43:0,56,1326 +chrX 2952272 . C T, 756.64 . AS_QUALapprox=|764|0;AS_VarDP=36|29|0;BaseQRankSum=1.544;DP=67;MQRankSum=0.000;QUALapprox=764;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=0.885;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:36,29,0:65:99:764,0,906,871,993,1864:16,20,15,14 +chrX 2952273 . C . . END=2952969 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,112,1792 +chrX 2952970 . G C, 686.64 . AS_QUALapprox=|694|0;AS_VarDP=26|27|0;BaseQRankSum=0.307;DP=54;MQRankSum=0.000;QUALapprox=694;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=0.685;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:26,27,0:53:99:694,0,664,773,745,1517:12,14,15,12 +chrX 2952971 . T . . END=2953432 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 2953433 . G A, 709.64 . AS_QUALapprox=|717|0;AS_VarDP=34|28|0;BaseQRankSum=1.392;DP=63;MQRankSum=0.000;QUALapprox=717;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=-0.637;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:34,28,0:62:99:717,0,840,819,924,1743:17,17,13,15 +chrX 2953434 . C . . END=2955803 GT:DP:GQ:MIN_DP:PL 0/0:57:43:57:0,43,1135 +chrX 2955804 . C A, 634.64 . AS_QUALapprox=|642|0;AS_VarDP=26|23|0;BaseQRankSum=0.929;DP=52;MQRankSum=0.000;QUALapprox=642;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=-1.333;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:26,23,0:49:99:642,0,726,720,796,1516:19,7,14,9 +chrX 2955805 . G . . END=2957707 GT:DP:GQ:MIN_DP:PL 0/0:50:60:50:0,60,1012 +chrX 2957708 . C . . END=2957708 GT:DP:GQ:MIN_DP:PL 0/0:48:11:48:0,11,1312 +chrX 2957709 . A . . END=2959793 GT:DP:GQ:MIN_DP:PL 0/0:62:95:62:0,95,1549 +chrX 2959794 . G A, 640.64 . AS_QUALapprox=|648|0;AS_VarDP=25|24|0;BaseQRankSum=0.756;DP=50;MQRankSum=0.000;QUALapprox=648;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=-0.390;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:25,24,0:49:99:648,0,632,722,704,1426:10,15,11,13 +chrX 2959795 . C . . END=2959834 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 2959835 . T C, 592.64 . AS_QUALapprox=|600|0;AS_VarDP=26|27|0;BaseQRankSum=-2.611;DP=56;MQRankSum=0.000;QUALapprox=600;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=0.828;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:26,27,0:53:99:600,0,701,678,780,1458:13,13,11,16 +chrX 2959836 . G . . END=2960254 GT:DP:GQ:MIN_DP:PL 0/0:29:39:23:0,39,585 +chrX 2960255 . T C, 1005.06 . AS_QUALapprox=|1019|0;AS_VarDP=0|24|0;DP=24;QUALapprox=1019;RAW_GT_COUNT=0,0,1;RAW_MQandDP=49871,24;VarDP=24 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,24,0:24:72:0|1:2960255_T_C:1019,72,0,1019,72,1019:2960255:0,0,13,11 +chrX 2960256 . G . . END=2960262 GT:DP:GQ:MIN_DP:PL 0/0:22:33:21:0,33,495 +chrX 2960263 . C T, 900.06 . AS_QUALapprox=|914|0;AS_VarDP=0|21|0;DP=21;QUALapprox=914;RAW_GT_COUNT=0,0,1;RAW_MQandDP=42916,21;VarDP=21 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,21,0:21:63:0|1:2960255_T_C:914,63,0,914,63,914:2960255:0,0,13,8 +chrX 2960264 . G . . END=2960266 GT:DP:GQ:MIN_DP:PL 0/0:15:33:15:0,33,495 +chrX 2960267 . T . . END=2960268 GT:DP:GQ:MIN_DP:PL 0/0:15:0:15:0,0,303 +chrX 2960269 . A . . END=2960293 GT:DP:GQ:MIN_DP:PL 0/0:32:45:32:0,45,675 +chrX 2960294 . AGAAGAG A, 231.60 . AS_QUALapprox=|239|0;AS_VarDP=32|8|0;BaseQRankSum=-0.108;DP=44;MQRankSum=-4.630;QUALapprox=239;RAW_GT_COUNT=0,1,0;RAW_MQandDP=144835,44;ReadPosRankSum=1.686;VarDP=40 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:32,8,0:40:99:0|1:2960255_T_C:239,0,1269,335,1293,1629:2960255:14,18,8,0 +chrX 2960301 . A . . END=2962852 GT:DP:GQ:MIN_DP:PL 0/0:47:31:43:0,31,1167 +chrX 2962853 . T C, 665.64 . AS_QUALapprox=|673|0;AS_VarDP=26|29|0;BaseQRankSum=-2.482;DP=57;MQRankSum=0.000;QUALapprox=673;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=0.034;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:26,29,0:55:99:673,0,685,751,771,1522:14,12,14,15 +chrX 2962854 . G . . END=2963506 GT:DP:GQ:MIN_DP:PL 0/0:56:94:56:0,94,1245 +chrX 2963507 . C . . END=2963507 GT:DP:GQ:MIN_DP:PL 0/0:46:15:46:0,15,1171 +chrX 2963508 . T . . END=2963515 GT:DP:GQ:MIN_DP:PL 0/0:54:57:54:0,57,1438 +chrX 2963516 . A . . END=2963516 GT:DP:GQ:MIN_DP:PL 0/0:53:11:53:0,11,1345 +chrX 2963517 . T . . END=2963532 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,105,1439 +chrX 2963533 . C CT, 75.60 . AS_QUALapprox=|83|0;AS_VarDP=10|9|0;BaseQRankSum=2.432;DP=44;MQRankSum=-1.864;QUALapprox=83;RAW_GT_COUNT=0,1,0;RAW_MQandDP=144989,44;ReadPosRankSum=0.369;VarDP=19 GT:AD:DP:GQ:PL:SB 0/1:10,9,0:19:83:83,0,140,113,165,278:2,8,8,1 +chrX 2963534 . T . . END=2963558 GT:DP:GQ:MIN_DP:PL 0/0:52:54:52:0,54,810 +chrX 2963559 . G . . END=2963559 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,671 +chrX 2963560 . A . . END=2965523 GT:DP:GQ:MIN_DP:PL 0/0:40:25:39:0,25,1021 +chrX 2965524 . T . . END=2965524 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,1037 +chrX 2965525 . A . . END=2965529 GT:DP:GQ:MIN_DP:PL 0/0:42:74:42:0,74,1155 +chrX 2965530 . T . . END=2965530 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,936 +chrX 2965531 . A . . END=2965548 GT:DP:GQ:MIN_DP:PL 0/0:43:20:38:0,20,1042 +chrX 2965549 . AT A, 1363.03 . AS_QUALapprox=|1377|0;AS_VarDP=0|37|0;DP=38;QUALapprox=1377;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;VarDP=37 GT:AD:DP:GQ:PL:SB 1/1:0,37,0:37:99:1377,111,0,1377,111,1377:0,0,19,18 +chrX 2965551 . A . . END=2966611 GT:DP:GQ:MIN_DP:PL 0/0:55:74:55:0,74,1256 +chrX 2966612 . G . . END=2966612 GT:DP:GQ:MIN_DP:PL 0/0:49:14:49:0,14,1265 +chrX 2966613 . A . . END=2973354 GT:DP:GQ:MIN_DP:PL 0/0:60:67:60:0,67,1048 +chrX 2973355 . C . . END=2973355 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,1112 +chrX 2973356 . A . . END=2974998 GT:DP:GQ:MIN_DP:PL 0/0:40:23:39:0,23,1076 +chrX 2974999 . T . . END=2974999 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,1013 +chrX 2975000 . A . . END=2975002 GT:DP:GQ:MIN_DP:PL 0/0:36:65:36:0,65,1103 +chrX 2975003 . G . . END=2975004 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,710 +chrX 2975005 . C CA,CAAAAA, 173.60 . AS_QUALapprox=|153|181|0;AS_VarDP=8|5|6|0;BaseQRankSum=0.000;DP=42;MQRankSum=-0.746;QUALapprox=181;RAW_GT_COUNT=0,1,0;RAW_MQandDP=143449,42;ReadPosRankSum=0.000;VarDP=19 GT:AD:DP:GQ:PL:SB 0/2:8,5,6,0:19:28:181,28,131,0,48,396,180,183,307,439:8,0,7,4 +chrX 2975006 . A . . END=2975047 GT:DP:GQ:MIN_DP:PL 0/0:45:76:45:0,76,1215 +chrX 2975048 . G . . END=2975048 GT:DP:GQ:MIN_DP:PL 0/0:55:0:55:0,0,1385 +chrX 2975049 . A . . END=2975053 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 2975054 . C . . END=2975054 GT:DP:GQ:MIN_DP:PL 0/0:52:13:52:0,13,1390 +chrX 2975055 . A . . END=2977376 GT:DP:GQ:MIN_DP:PL 0/0:55:57:55:0,57,1300 +chrX 2977377 . G . . END=2977377 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1148 +chrX 2977378 . A . . END=2985040 GT:DP:GQ:MIN_DP:PL 0/0:54:26:50:0,26,1037 +chrX 2985041 . G . . END=2985041 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1225 +chrX 2985042 . T . . END=2986837 GT:DP:GQ:MIN_DP:PL 0/0:58:52:58:0,52,1002 +chrX 2986838 . T . . END=2986838 GT:DP:GQ:MIN_DP:PL 0/0:34:3:34:0,3,814 +chrX 2986839 . C . . END=2986843 GT:DP:GQ:MIN_DP:PL 0/0:37:71:37:0,71,1006 +chrX 2986844 . T . . END=2986844 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,685 +chrX 2986845 . A . . END=2986849 GT:DP:GQ:MIN_DP:PL 0/0:33:22:29:0,22,606 +chrX 2986850 . A . . END=2986850 GT:DP:GQ:MIN_DP:PL 0/0:27:0:27:0,0,461 +chrX 2986851 . C . . END=2986852 GT:DP:GQ:MIN_DP:PL 0/0:34:72:34:0,72,1080 +chrX 2986853 . A . . END=2986853 GT:DP:GQ:MIN_DP:PL 0/0:23:0:23:0,0,510 +chrX 2986854 . C . . END=2988811 GT:DP:GQ:MIN_DP:PL 0/0:29:38:29:0,38,719 +chrX 2988812 . T . . END=2988812 GT:DP:GQ:MIN_DP:PL 0/0:57:8:57:0,8,1266 +chrX 2988813 . CA *,C,AA,CAA, 484.02 . AS_QUALapprox=|0|224|137|208|0;AS_VarDP=1|1|14|6|8|0;BaseQRankSum=3.166;DP=57;MQRankSum=2.648;QUALapprox=501;RAW_GT_COUNT=0,0,1;RAW_MQandDP=193200,57;ReadPosRankSum=-1.040;VarDP=30 GT:AD:DP:GQ:PL:SB 2/4:1,1,14,6,8,0:30:99:501,536,1276,277,368,354,364,1047,136,1159,293,416,0,358,361,590,1004,380,843,455,984:1,0,16,13 +chrX 2988815 . A . . END=2988833 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 2988834 . G . . END=2988834 GT:DP:GQ:MIN_DP:PL 0/0:57:0:57:0,0,1553 +chrX 2988835 . A . . END=2989348 GT:DP:GQ:MIN_DP:PL 0/0:40:22:39:0,22,1025 +chrX 2989349 . C . . END=2989349 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,548 +chrX 2989350 . A . . END=2993606 GT:DP:GQ:MIN_DP:PL 0/0:61:77:61:0,77,1301 +chrX 2993607 . A . . END=2993607 GT:DP:GQ:MIN_DP:PL 0/0:57:0:57:0,0,1287 +chrX 2993608 . G . . END=2996493 GT:DP:GQ:MIN_DP:PL 0/0:57:27:35:0,27,978 +chrX 2996494 . A . . END=2996494 GT:DP:GQ:MIN_DP:PL 0/0:57:7:57:0,7,1512 +chrX 2996495 . A . . END=2996496 GT:DP:GQ:MIN_DP:PL 0/0:57:32:57:0,32,1633 +chrX 2996497 . A . . END=2996498 GT:DP:GQ:MIN_DP:PL 0/0:53:0:53:0,0,1349 +chrX 2996499 . T . . END=2996499 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 2996500 . C . . END=2996500 GT:DP:GQ:MIN_DP:PL 0/0:52:0:52:0,0,1400 +chrX 2996501 . T . . END=2996501 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 2996502 . T . . END=2996502 GT:DP:GQ:MIN_DP:PL 0/0:55:0:55:0,0,1365 +chrX 2996503 . T . . END=2996503 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 2996504 . C . . END=2996504 GT:DP:GQ:MIN_DP:PL 0/0:55:0:55:0,0,1356 +chrX 2996505 . CCTTT C,CCTTTCTTTCTTTCTTT, 1096.02 . AS_QUALapprox=|410|678|0;AS_VarDP=0|13|18|0;DP=52;QUALapprox=1113;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180525,52;VarDP=31 GT:AD:DP:GQ:PL:SB 1/2:0,13,18,0:31:99:1113,703,744,435,0,452,1137,749,478,1204:0,0,15,16 +chrX 2996510 . C . . END=2996559 GT:DP:GQ:MIN_DP:PL 0/0:55:84:55:0,84,1260 +chrX 2996560 . C . . END=2996560 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,1130 +chrX 2996561 . T . . END=2996802 GT:DP:GQ:MIN_DP:PL 0/0:50:33:46:0,33,1177 +chrX 2996803 . G . . END=2996803 GT:DP:GQ:MIN_DP:PL 0/0:35:11:35:0,11,937 +chrX 2996804 . A . . END=2998965 GT:DP:GQ:MIN_DP:PL 0/0:56:42:56:0,42,963 +chrX 2998966 . T . . END=2998967 GT:DP:GQ:MIN_DP:PL 0/0:52:0:52:0,0,1195 +chrX 2998968 . T TACAC, 1634.03 . AS_QUALapprox=|1648|0;AS_VarDP=0|40|0;DP=59;QUALapprox=1648;RAW_GT_COUNT=0,0,1;RAW_MQandDP=207716,59;VarDP=40 GT:AD:DP:GQ:PL:SB 1/1:0,40,0:40:99:1648,119,0,1649,120,1650:0,0,22,18 +chrX 2998969 . A . . END=2999009 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,105,1575 +chrX 2999010 . G . . END=2999010 GT:DP:GQ:MIN_DP:PL 0/0:56:0:56:0,0,1347 +chrX 2999011 . A . . END=3000032 GT:DP:GQ:MIN_DP:PL 0/0:59:34:36:0,34,1033 +chrX 3000033 . T . . END=3000033 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,899 +chrX 3000034 . C . . END=3001050 GT:DP:GQ:MIN_DP:PL 0/0:43:48:40:0,48,913 +chrX 3001051 . G C, 1088.64 . AS_QUALapprox=|1096|0;AS_VarDP=24|42|0;BaseQRankSum=-0.804;DP=67;MQRankSum=0.000;QUALapprox=1096;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=0.854;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:24,42,0:66:99:1096,0,587,1168,712,1880:9,15,20,22 +chrX 3001052 . T . . END=3001370 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 3001371 . C T, 930.64 . AS_QUALapprox=|938|0;AS_VarDP=29|34|0;BaseQRankSum=0.568;DP=63;MQRankSum=-0.892;QUALapprox=938;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226116,63;ReadPosRankSum=0.310;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:29,34,0:63:99:938,0,767,1025,869,1894:14,15,18,16 +chrX 3001372 . G . . END=3004538 GT:DP:GQ:MIN_DP:PL 0/0:62:55:62:0,55,978 +chrX 3004539 . C . . END=3004539 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,814 +chrX 3004540 . A . . END=3004551 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 3004552 . C . . END=3004552 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1036 +chrX 3004553 . A . . END=3004560 GT:DP:GQ:MIN_DP:PL 0/0:52:49:52:0,49,1283 +chrX 3004561 . T . . END=3004561 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,920 +chrX 3004562 . A . . END=3004566 GT:DP:GQ:MIN_DP:PL 0/0:48:48:48:0,48,1142 +chrX 3004567 . T . . END=3004567 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,1084 +chrX 3004568 . C . . END=3004570 GT:DP:GQ:MIN_DP:PL 0/0:49:67:49:0,67,1272 +chrX 3004571 . T . . END=3004571 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1157 +chrX 3004572 . C . . END=3004577 GT:DP:GQ:MIN_DP:PL 0/0:47:28:46:0,28,1166 +chrX 3004578 . G . . END=3004578 GT:DP:GQ:MIN_DP:PL 0/0:50:13:50:0,13,1213 +chrX 3004579 . C . . END=3004581 GT:DP:GQ:MIN_DP:PL 0/0:53:72:53:0,72,1254 +chrX 3004582 . C A, 0.02 . AS_QUALapprox=|1|0;AS_VarDP=31|11|0;BaseQRankSum=-2.146;DP=44;MQRankSum=-1.625;QUALapprox=1;RAW_GT_COUNT=0,1,0;RAW_MQandDP=153186,44;ReadPosRankSum=1.281;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:31,11,0:42:1:1,0,799,94,821,915:28,3,0,11 +chrX 3004583 . A . . END=3007246 GT:DP:GQ:MIN_DP:PL 0/0:62:38:60:0,38,1106 +chrX 3007247 . TA T, 910.03 . AS_QUALapprox=|924|0;AS_VarDP=0|38|0;DP=48;QUALapprox=924;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=38 GT:AD:DP:GQ:PL:SB 1/1:0,38,0:38:99:924,114,0,924,114,924:0,0,21,17 +chrX 3007249 . A . . END=3008448 GT:DP:GQ:MIN_DP:PL 0/0:63:35:63:0,35,1597 +chrX 3008449 . TTTTCTTTC T,TTTTC, 738.02 . AS_QUALapprox=|388|406|0;AS_VarDP=1|10|10|0;BaseQRankSum=-0.162;DP=62;MQRankSum=0.000;QUALapprox=755;RAW_GT_COUNT=0,0,1;RAW_MQandDP=220736,62;ReadPosRankSum=-0.744;VarDP=21 GT:AD:DP:GQ:PL:SB 1/2:1,10,10,0:21:99:755,367,449,351,0,349,761,443,386,827:1,0,2,18 +chrX 3008458 . T . . END=3008537 GT:DP:GQ:MIN_DP:PL 0/0:55:47:55:0,47,1080 +chrX 3008538 . C . . END=3008538 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,1203 +chrX 3008539 . C . . END=3008542 GT:DP:GQ:MIN_DP:PL 0/0:48:46:48:0,46,1371 +chrX 3008543 . A . . END=3008543 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,1074 +chrX 3008544 . T . . END=3008555 GT:DP:GQ:MIN_DP:PL 0/0:50:66:50:0,66,1355 +chrX 3008556 . C . . END=3008556 GT:DP:GQ:MIN_DP:PL 0/0:50:17:50:0,17,1391 +chrX 3008557 . C . . END=3008561 GT:DP:GQ:MIN_DP:PL 0/0:50:25:48:0,25,1329 +chrX 3008562 . A . . END=3008562 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,1191 +chrX 3008563 . T . . END=3008740 GT:DP:GQ:MIN_DP:PL 0/0:59:92:59:0,92,1444 +chrX 3008741 . GT G, 1182.03 . AS_QUALapprox=|1196|0;AS_VarDP=1|43|0;BaseQRankSum=-0.237;DP=53;MQRankSum=0.000;QUALapprox=1196;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;ReadPosRankSum=-0.552;VarDP=44 GT:AD:DP:GQ:PL:SB 1/1:1,43,0:44:99:1196,103,0,1199,129,1224:1,0,27,16 +chrX 3008743 . T . . END=3009402 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,114,1553 +chrX 3009403 . A G, 1672.06 . AS_QUALapprox=|1686|0;AS_VarDP=0|52|0;DP=54;QUALapprox=1686;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1686,156,0,1686,156,1686:0,0,22,30 +chrX 3009404 . G . . END=3010513 GT:DP:GQ:MIN_DP:PL 0/0:53:66:53:0,66,1043 +chrX 3010514 . T C, 1906.06 . AS_QUALapprox=|1920|0;AS_VarDP=0|59|0;DP=60;QUALapprox=1920;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1920,177,0,1920,177,1920:0,0,30,29 +chrX 3010515 . G . . END=3011251 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,101,1593 +chrX 3011252 . C CT, 1046.03 . AS_QUALapprox=|1060|0;AS_VarDP=0|46|0;DP=59;QUALapprox=1060;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1060,136,0,1060,136,1060:0,0,25,21 +chrX 3011253 . T . . END=3011267 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 3011268 . G . . END=3011270 GT:DP:GQ:MIN_DP:PL 0/0:61:0:61:0,0,937 +chrX 3011271 . A . . END=3012319 GT:DP:GQ:MIN_DP:PL 0/0:57:67:57:0,67,839 +chrX 3012320 . G T, 1136.06 . AS_QUALapprox=|1150|0;AS_VarDP=0|35|0;DP=39;QUALapprox=1150;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140400,39;VarDP=35 GT:AD:DP:GQ:PL:SB 1/1:0,35,0:35:99:1150,105,0,1150,105,1150:0,0,12,23 +chrX 3012321 . T . . END=3012531 GT:DP:GQ:MIN_DP:PL 0/0:33:40:33:0,40,759 +chrX 3012532 . C . . END=3012532 GT:DP:GQ:MIN_DP:PL 0/0:26:0:26:0,0,636 +chrX 3012533 . T . . END=3012533 GT:DP:GQ:MIN_DP:PL 0/0:25:40:25:0,40,739 +chrX 3012534 . C . . END=3012535 GT:DP:GQ:MIN_DP:PL 0/0:27:0:27:0,0,595 +chrX 3012536 . A . . END=3012536 GT:DP:GQ:MIN_DP:PL 0/0:28:35:28:0,35,825 +chrX 3012537 . T . . END=3012539 GT:DP:GQ:MIN_DP:PL 0/0:27:0:27:0,0,612 +chrX 3012540 . C . . END=3012542 GT:DP:GQ:MIN_DP:PL 0/0:26:24:26:0,24,224 +chrX 3012543 . A . . END=3012543 GT:DP:GQ:MIN_DP:PL 0/0:23:18:23:0,18,270 +chrX 3012544 . A . . END=3012567 GT:DP:GQ:MIN_DP:PL 0/0:18:21:18:0,21,315 +chrX 3012568 . AATAT *,A,AAT,TATAT,ATATAT, 1.80 . AS_QUALapprox=|0|0|0|0|9|0;AS_VarDP=3|0|0|0|1|1|0;BaseQRankSum=0.000;DP=16;MQRankSum=0.842;QUALapprox=9;RAW_GT_COUNT=0,1,0;RAW_MQandDP=41993,16;ReadPosRankSum=-0.524;VarDP=5 GT:AD:DP:GQ:PL:SB 0/5:3,0,0,0,1,1,0:5:9:9,35,295,30,270,275,30,270,276,276,10,119,87,87,172,0,73,45,45,64,53,35,295,270,270,119,73,295:0,3,2,0 +chrX 3012573 . A . . END=3012591 GT:DP:GQ:MIN_DP:PL 0/0:11:21:10:0,21,315 +chrX 3012592 . T TA, 6.56 . AS_QUALapprox=|14|0;AS_VarDP=0|0|0;BaseQRankSum=0.253;DP=15;MQRankSum=0.842;QUALapprox=14;RAW_GT_COUNT=0,1,0;RAW_MQandDP=43962,15;ReadPosRankSum=1.282;VarDP=5 GT:AD:DP:GQ:PL:SB 0/1:4,1,0:5:14:14,0,139,26,142,169:1,3,1,0 +chrX 3012593 . A . . END=3012593 GT:DP:GQ:MIN_DP:PL 0/0:15:42:15:0,42,630 +chrX 3012594 . T TA, 0.17 . AS_QUALapprox=|5|0;AS_VarDP=0|0|0;BaseQRankSum=-1.282;DP=15;MQRankSum=0.000;QUALapprox=5;RAW_GT_COUNT=0,1,0;RAW_MQandDP=43962,15;ReadPosRankSum=0.524;VarDP=5 GT:AD:DP:GQ:PL:SB 0/1:4,1,0:5:5:5,0,53,16,56,72:1,3,1,0 +chrX 3012595 . A . . END=3012595 GT:DP:GQ:MIN_DP:PL 0/0:15:42:15:0,42,630 +chrX 3012596 . T TA, 10.60 . AS_QUALapprox=|18|0;AS_VarDP=3|3|0;BaseQRankSum=0.674;DP=16;MQRankSum=-0.842;QUALapprox=18;RAW_GT_COUNT=0,1,0;RAW_MQandDP=47562,16;ReadPosRankSum=-1.440;VarDP=6 GT:AD:DP:GQ:PL:SB 0/1:3,3,0:6:18:18,0,78,27,85,113:3,0,0,3 +chrX 3012597 . A . . END=3012598 GT:DP:GQ:MIN_DP:PL 0/0:16:39:16:0,39,585 +chrX 3012599 . A AT, 181.97 . AS_QUALapprox=|196|0;AS_VarDP=0|7|0;DP=17;QUALapprox=196;RAW_GT_COUNT=0,0,1;RAW_MQandDP=51162,17;VarDP=7 GT:AD:DP:GQ:PL:SB 1/1:0,7,0:7:20:196,20,0,196,20,196:0,0,3,4 +chrX 3012600 . A . . END=3012602 GT:DP:GQ:MIN_DP:PL 0/0:18:39:17:0,39,585 +chrX 3012603 . T TATA,TATATA,TATATATA,TATATATATATA, 1005.96 . AS_QUALapprox=|906|993|965|864|0;AS_VarDP=0|1|1|3|0|0;DP=24;QUALapprox=1023;RAW_GT_COUNT=0,0,1;RAW_MQandDP=76362,24;VarDP=5 GT:AD:DP:GQ:PL:SB 1/3:0,1,1,3,0,0:5:10:1023,178,117,102,16,30,126,0,10,58,223,59,45,74,159,240,96,51,74,150,175:0,0,2,3 +chrX 3012604 . A . . END=3012609 GT:DP:GQ:MIN_DP:PL 0/0:25:52:25:0,52,695 +chrX 3012610 . G A, 1246.06 . AS_QUALapprox=|1260|0;AS_VarDP=0|28|0;DP=28;QUALapprox=1260;RAW_GT_COUNT=0,0,1;RAW_MQandDP=92762,28;VarDP=28 GT:AD:DP:GQ:PL:SB 1/1:0,28,0:28:84:1260,84,0,1260,84,1260:0,0,12,16 +chrX 3012611 . T . . END=3012613 GT:DP:GQ:MIN_DP:PL 0/0:27:75:27:0,75,1125 +chrX 3012614 . G A, 1285.06 . AS_QUALapprox=|1299|0;AS_VarDP=0|29|0;DP=29;QUALapprox=1299;RAW_GT_COUNT=0,0,1;RAW_MQandDP=98441,29;VarDP=29 GT:AD:DP:GQ:PL:SB 1/1:0,29,0:29:87:1299,87,0,1299,87,1299:0,0,14,15 +chrX 3012615 . T . . END=3012620 GT:DP:GQ:MIN_DP:PL 0/0:28:70:28:0,70,884 +chrX 3012621 . TAC T, 1240.03 . AS_QUALapprox=|1254|0;AS_VarDP=0|28|0;DP=30;QUALapprox=1254;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104800,30;VarDP=28 GT:AD:DP:GQ:PL:SB 1/1:0,28,0:28:84:1254,84,0,1254,84,1254:0,0,14,14 +chrX 3012624 . A . . END=3012624 GT:DP:GQ:MIN_DP:PL 0/0:34:33:34:0,33,1002 +chrX 3012625 . C . . END=3012625 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,824 +chrX 3012626 . A . . END=3013436 GT:DP:GQ:MIN_DP:PL 0/0:54:43:54:0,43,1032 +chrX 3013437 . C G, 1708.06 . AS_QUALapprox=|1722|0;AS_VarDP=1|52|0;BaseQRankSum=2.947;DP=56;MQRankSum=0.000;QUALapprox=1722;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;ReadPosRankSum=0.817;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:1,52,0:53:99:1722,149,0,1724,156,1731:0,1,20,32 +chrX 3013438 . G . . END=3013502 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 3013503 . G A, 1604.06 . AS_QUALapprox=|1618|0;AS_VarDP=0|47|0;DP=48;QUALapprox=1618;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1618,141,0,1618,141,1618:0,0,28,19 +chrX 3013504 . A . . END=3013550 GT:DP:GQ:MIN_DP:PL 0/0:43:94:43:0,94,1354 +chrX 3013551 . C T, 1461.06 . AS_QUALapprox=|1475|0;AS_VarDP=0|43|0;DP=44;QUALapprox=1475;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158400,44;VarDP=43 GT:AD:DP:GQ:PL:SB 1/1:0,43,0:43:99:1475,129,0,1475,129,1475:0,0,36,7 +chrX 3013552 . T . . END=3013579 GT:DP:GQ:MIN_DP:PL 0/0:40:59:40:0,59,1113 +chrX 3013580 . T . . END=3013580 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,839 +chrX 3013581 . G . . END=3013582 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 3013583 . C . . END=3013583 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,640 +chrX 3013584 . G . . END=3013588 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,104,1254 +chrX 3013589 . T . . END=3013589 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,385 +chrX 3013590 . G . . END=3013596 GT:DP:GQ:MIN_DP:PL 0/0:44:38:34:0,38,903 +chrX 3013597 . T . . END=3013597 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,882 +chrX 3013598 . G . . END=3013601 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 3013602 . C . . END=3013602 GT:DP:GQ:MIN_DP:PL 0/0:34:7:34:0,7,812 +chrX 3013603 . G . . END=3016389 GT:DP:GQ:MIN_DP:PL 0/0:61:98:61:0,98,1241 +chrX 3016390 . T C, 2076.06 . AS_QUALapprox=|2090|0;AS_VarDP=0|67|0;DP=71;QUALapprox=2090;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;VarDP=67 GT:AD:DP:GQ:PL:SB 1/1:0,67,0:67:99:2090,200,0,2090,200,2090:0,0,29,38 +chrX 3016391 . G . . END=3016673 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 3016674 . C T, 2145.06 . AS_QUALapprox=|2159|0;AS_VarDP=0|65|0;DP=67;QUALapprox=2159;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=65 GT:AD:DP:GQ:PL:SB 1/1:0,65,0:65:99:2159,195,0,2159,195,2159:0,0,37,28 +chrX 3016675 . A . . END=3016898 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 3016899 . G A, 2178.06 . AS_QUALapprox=|2192|0;AS_VarDP=0|66|0;DP=67;QUALapprox=2192;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=66 GT:AD:DP:GQ:PL:SB 1/1:0,66,0:66:99:2192,198,0,2192,198,2192:0,0,32,34 +chrX 3016900 . G . . END=3017626 GT:DP:GQ:MIN_DP:PL 0/0:72:84:72:0,84,1385 +chrX 3017627 . G A, 337.64 . AS_QUALapprox=|345|0;AS_VarDP=27|14|0;BaseQRankSum=0.246;DP=45;MQRankSum=0.000;QUALapprox=345;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=0.028;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:27,14,0:41:99:345,0,713,425,755,1180:9,18,6,8 +chrX 3017628 . G . . END=3019263 GT:DP:GQ:MIN_DP:PL 0/0:56:62:56:0,62,1269 +chrX 3019264 . CAA C, 627.03 . AS_QUALapprox=|641|0;AS_VarDP=1|21|0;DP=44;MQRankSum=0.000;QUALapprox=641;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158400,44;VarDP=22 GT:AD:DP:GQ:PL:SB 1/1:1,21,0:22:45:641,45,0,644,64,663:0,1,10,11 +chrX 3019267 . A . . END=3019706 GT:DP:GQ:MIN_DP:PL 0/0:45:51:45:0,51,996 +chrX 3019707 . T C, 1658.06 . AS_QUALapprox=|1672|0;AS_VarDP=0|51|0;DP=54;QUALapprox=1672;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1672,152,0,1672,152,1672:0,0,27,24 +chrX 3019708 . G . . END=3020225 GT:DP:GQ:MIN_DP:PL 0/0:53:88:53:0,88,1484 +chrX 3020226 . G C, 1415.06 . AS_QUALapprox=|1429|0;AS_VarDP=0|43|0;DP=43;QUALapprox=1429;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154800,43;VarDP=43 GT:AD:DP:GQ:PL:SB 1/1:0,43,0:43:99:1429,129,0,1429,129,1429:0,0,32,11 +chrX 3020227 . G . . END=3020273 GT:DP:GQ:MIN_DP:PL 0/0:33:32:27:0,32,810 +chrX 3020274 . C . . END=3020275 GT:DP:GQ:MIN_DP:PL 0/0:46:1:46:0,1,126 +chrX 3020276 . A . . END=3020584 GT:DP:GQ:MIN_DP:PL 0/0:45:50:45:0,50,900 +chrX 3020585 . T . . END=3020587 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,277 +chrX 3020588 . C CA,CAA, 628.02 . AS_QUALapprox=|435|520|0;AS_VarDP=1|10|18|0;BaseQRankSum=-0.384;DP=48;MQRankSum=-0.226;QUALapprox=645;RAW_GT_COUNT=0,0,1;RAW_MQandDP=166606,48;ReadPosRankSum=-0.364;VarDP=29 GT:AD:DP:GQ:PL:SB 1/2:1,10,18,0:29:99:645,281,210,160,0,125,561,285,183,541:1,0,10,18 +chrX 3020589 . A . . END=3020898 GT:DP:GQ:MIN_DP:PL 0/0:64:80:64:0,80,1683 +chrX 3020899 . T C, 1923.06 . AS_QUALapprox=|1937|0;AS_VarDP=0|63|0;DP=66;QUALapprox=1937;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=63 GT:AD:DP:GQ:PL:SB 1/1:0,63,0:63:99:1937,187,0,1937,187,1937:0,0,27,36 +chrX 3020900 . C . . END=3021706 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,104,1544 +chrX 3021707 . C CT, 728.03 . AS_QUALapprox=|742|0;AS_VarDP=0|37|0;DP=54;QUALapprox=742;RAW_GT_COUNT=0,0,1;RAW_MQandDP=192564,54;VarDP=37 GT:AD:DP:GQ:PL:SB 1/1:0,37,0:37:99:742,106,0,742,106,742:0,0,22,15 +chrX 3021708 . T . . END=3021724 GT:DP:GQ:MIN_DP:PL 0/0:58:84:58:0,84,1260 +chrX 3021725 . A . . END=3021725 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,778 +chrX 3021726 . A . . END=3021880 GT:DP:GQ:MIN_DP:PL 0/0:37:35:33:0,35,928 +chrX 3021881 . T TTG,TTGTG, 1734.03 . AS_QUALapprox=|664|1748|0;AS_VarDP=0|2|39|0;DP=57;QUALapprox=1748;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=41 GT:AD:DP:GQ:PL:SB 2/2:0,2,39,0:41:59:1748,1204,1084,120,59,0,1539,1181,120,1448:0,0,22,19 +chrX 3021882 . T . . END=3021912 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 3021913 . C . . END=3021913 GT:DP:GQ:MIN_DP:PL 0/0:59:0:59:0,0,1503 +chrX 3021914 . T . . END=3024067 GT:DP:GQ:MIN_DP:PL 0/0:59:43:59:0,43,1169 +chrX 3024068 . T C, 1676.06 . AS_QUALapprox=|1690|0;AS_VarDP=0|51|0;DP=52;QUALapprox=1690;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1690,153,0,1690,153,1690:0,0,23,28 +chrX 3024069 . T . . END=3025545 GT:DP:GQ:MIN_DP:PL 0/0:52:54:52:0,54,1042 +chrX 3025546 . C CTA, 1727.03 . AS_QUALapprox=|1741|0;AS_VarDP=0|45|0;DP=49;QUALapprox=1741;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=45 GT:AD:DP:GQ:PL:SB 1/1:0,45,0:45:99:1741,135,0,1741,135,1742:0,0,19,26 +chrX 3025547 . T . . END=3026495 GT:DP:GQ:MIN_DP:PL 0/0:53:63:53:0,63,1386 +chrX 3026496 . A C, 1723.06 . AS_QUALapprox=|1737|0;AS_VarDP=0|55|0;DP=58;QUALapprox=1737;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1737,164,0,1737,164,1737:0,0,22,33 +chrX 3026497 . A . . END=3029732 GT:DP:GQ:MIN_DP:PL 0/0:58:82:58:0,82,1122 +chrX 3029733 . G T, 1763.06 . AS_QUALapprox=|1777|0;AS_VarDP=0|53|0;DP=53;QUALapprox=1777;RAW_GT_COUNT=0,0,1;RAW_MQandDP=189801,53;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1777,159,0,1777,159,1777:0,0,21,32 +chrX 3029734 . T . . END=3030906 GT:DP:GQ:MIN_DP:PL 0/0:61:97:61:0,97,1261 +chrX 3030907 . C T, 1693.06 . AS_QUALapprox=|1707|0;AS_VarDP=0|51|0;DP=52;QUALapprox=1707;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1707,153,0,1707,153,1707:0,0,24,27 +chrX 3030908 . A . . END=3031131 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,116,1692 +chrX 3031132 . CAAA C, 2035.03 . AS_QUALapprox=|2049|0;AS_VarDP=2|47|0;DP=60;MQRankSum=0.000;QUALapprox=2049;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:2,47,0:49:99:2049,112,0,2054,142,2084:1,1,19,28 +chrX 3031136 . A . . END=3032164 GT:DP:GQ:MIN_DP:PL 0/0:63:95:63:0,95,1619 +chrX 3032165 . A T, 2918.06 . AS_QUALapprox=|2932|0;AS_VarDP=0|67|0;DP=69;QUALapprox=2932;RAW_GT_COUNT=0,0,1;RAW_MQandDP=246564,69;VarDP=67 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,67,0:67:99:0|1:3032165_A_T:2932,202,0,2932,202,2932:3032165:0,0,33,34 +chrX 3032166 . T . . END=3032175 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 3032176 . C T, 2997.06 . AS_QUALapprox=|3011|0;AS_VarDP=0|69|0;DP=71;QUALapprox=3011;RAW_GT_COUNT=0,0,1;RAW_MQandDP=253764,71;VarDP=69 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,69,0:69:99:0|1:3032165_A_T:3011,208,0,3011,208,3011:3032165:0,0,34,35 +chrX 3032177 . G . . END=3032919 GT:DP:GQ:MIN_DP:PL 0/0:43:22:40:0,22,833 +chrX 3032920 . A G, 2048.06 . AS_QUALapprox=|2062|0;AS_VarDP=0|64|0;DP=67;QUALapprox=2062;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=64 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:2062,192,0,2062,192,2062:0,0,26,38 +chrX 3032921 . A . . END=3032956 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 3032957 . C T, 2085.06 . AS_QUALapprox=|2099|0;AS_VarDP=0|65|0;DP=65;QUALapprox=2099;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=65 GT:AD:DP:GQ:PL:SB 1/1:0,65,0:65:99:2099,195,0,2099,195,2099:0,0,27,38 +chrX 3032958 . G . . END=3033392 GT:DP:GQ:MIN_DP:PL 0/0:60:96:60:0,96,1800 +chrX 3033393 . C G, 1683.06 . AS_QUALapprox=|1697|0;AS_VarDP=0|50|0;DP=51;QUALapprox=1697;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1697,150,0,1697,150,1697:0,0,26,24 +chrX 3033394 . G . . END=3033889 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,107,1590 +chrX 3033890 . G A, 1310.06 . AS_QUALapprox=|1324|0;AS_VarDP=0|40|0;DP=42;QUALapprox=1324;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151200,42;VarDP=40 GT:AD:DP:GQ:PL:SB 1/1:0,40,0:40:99:1324,120,0,1324,120,1324:0,0,21,19 +chrX 3033891 . A . . END=3035368 GT:DP:GQ:MIN_DP:PL 0/0:58:65:58:0,65,1132 +chrX 3035369 . A C, 1720.06 . AS_QUALapprox=|1734|0;AS_VarDP=0|56|0;DP=64;QUALapprox=1734;RAW_GT_COUNT=0,0,1;RAW_MQandDP=227700,64;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1734,167,0,1734,167,1734:0,0,26,30 +chrX 3035370 . G . . END=3035455 GT:DP:GQ:MIN_DP:PL 0/0:61:39:56:0,39,1558 +chrX 3035456 . A . . END=3035457 GT:DP:GQ:MIN_DP:PL 0/0:60:0:60:0,0,1314 +chrX 3035458 . T . . END=3035458 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 3035459 . T . . END=3035463 GT:DP:GQ:MIN_DP:PL 0/0:63:0:63:0,0,1245 +chrX 3035464 . T C, 1651.06 . AS_QUALapprox=|1665|0;AS_VarDP=0|50|0;DP=50;QUALapprox=1665;RAW_GT_COUNT=0,0,1;RAW_MQandDP=171714,50;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1665,150,0,1665,150,1665:0,0,23,27 +chrX 3035465 . T . . END=3035481 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 3035482 . T TTGTGTGTGTGTGTG, 1950.03 . AS_QUALapprox=|1964|0;AS_VarDP=0|44|0;DP=54;QUALapprox=1964;RAW_GT_COUNT=0,0,1;RAW_MQandDP=186114,54;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,44,0:44:99:0|1:3035482_T_TTGTGTGTGTGTGTG:1964,130,0,1967,132,1970:3035482:0,0,19,25 +chrX 3035483 . T . . END=3035500 GT:DP:GQ:MIN_DP:PL 0/0:48:87:48:0,87,1305 +chrX 3035501 . G GAGAGAGAGAGAGA, 2101.03 . AS_QUALapprox=|2115|0;AS_VarDP=0|47|0;DP=47;QUALapprox=2115;RAW_GT_COUNT=0,0,1;RAW_MQandDP=160914,47;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,47,0:47:99:0|1:3035482_T_TTGTGTGTGTGTGTG:2115,141,0,2115,141,2115:3035482:0,0,21,26 +chrX 3035502 . G . . END=3035502 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,102,1530 +chrX 3035503 . G A, 2055.06 . AS_QUALapprox=|2069|0;AS_VarDP=0|46|0;DP=47;QUALapprox=2069;RAW_GT_COUNT=0,0,1;RAW_MQandDP=160914,47;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,46,0:46:99:0|1:3035482_T_TTGTGTGTGTGTGTG:2069,138,0,2070,138,2070:3035482:0,0,20,26 +chrX 3035504 . G . . END=3035504 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,102,1530 +chrX 3035505 . G A, 1830.06 . AS_QUALapprox=|1844|0;AS_VarDP=0|41|0;DP=43;QUALapprox=1844;RAW_GT_COUNT=0,0,1;RAW_MQandDP=146514,43;VarDP=41 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,41,0:41:99:0|1:3035482_T_TTGTGTGTGTGTGTG:1844,123,0,1844,123,1845:3035482:0,0,16,25 +chrX 3035506 . G . . END=3035541 GT:DP:GQ:MIN_DP:PL 0/0:38:90:38:0,90,1252 +chrX 3035542 . G C, 1291.06 . AS_QUALapprox=|1305|0;AS_VarDP=0|40|0;DP=41;QUALapprox=1305;RAW_GT_COUNT=0,0,1;RAW_MQandDP=141898,41;VarDP=40 GT:AD:DP:GQ:PL:SB 1/1:0,40,0:40:99:1305,120,0,1305,120,1305:0,0,19,21 +chrX 3035543 . A . . END=3035546 GT:DP:GQ:MIN_DP:PL 0/0:65:0:65:0,0,1145 +chrX 3035547 . T . . END=3035548 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 3035549 . T . . END=3035556 GT:DP:GQ:MIN_DP:PL 0/0:60:0:60:0,0,1226 +chrX 3035557 . C . . END=3035557 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 3035558 . A . . END=3035564 GT:DP:GQ:MIN_DP:PL 0/0:57:0:57:0,0,1214 +chrX 3035565 . C . . END=3035731 GT:DP:GQ:MIN_DP:PL 0/0:45:40:45:0,40,1181 +chrX 3035732 . C T, 1136.06 . AS_QUALapprox=|1150|0;AS_VarDP=1|36|0;BaseQRankSum=2.065;DP=38;MQRankSum=6.167;QUALapprox=1150;RAW_GT_COUNT=0,0,1;RAW_MQandDP=135225,38;ReadPosRankSum=-0.937;VarDP=37 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:1,36,0:37:86:0|1:3035732_C_T:1150,86,0,1153,108,1175:3035732:0,1,18,18 +chrX 3035733 . G . . END=3035756 GT:DP:GQ:MIN_DP:PL 0/0:39:76:39:0,76,1038 +chrX 3035757 . G C, 1682.06 . AS_QUALapprox=|1696|0;AS_VarDP=0|40|0;DP=41;QUALapprox=1696;RAW_GT_COUNT=0,0,1;RAW_MQandDP=146025,41;VarDP=40 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,40,0:40:99:0|1:3035732_C_T:1696,120,0,1696,120,1696:3035732:0,0,19,21 +chrX 3035758 . C . . END=3036078 GT:DP:GQ:MIN_DP:PL 0/0:48:79:48:0,79,1145 +chrX 3036079 . G C, 459.64 . AS_QUALapprox=|467|0;AS_VarDP=27|19|0;BaseQRankSum=0.286;DP=49;MQRankSum=0.000;QUALapprox=467;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=0.223;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:27,19,0:46:99:467,0,729,549,785,1334:13,14,9,10 +chrX 3036080 . G . . END=3036528 GT:DP:GQ:MIN_DP:PL 0/0:52:83:52:0,83,1181 +chrX 3036529 . T A, 1569.06 . AS_QUALapprox=|1583|0;AS_VarDP=0|49|0;DP=51;QUALapprox=1583;RAW_GT_COUNT=0,0,1;RAW_MQandDP=178083,51;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1583,147,0,1583,147,1583:0,0,23,26 +chrX 3036530 . C . . END=3036647 GT:DP:GQ:MIN_DP:PL 0/0:43:47:43:0,47,900 +chrX 3036648 . T . . END=3036648 GT:DP:GQ:MIN_DP:PL 0/0:23:0:23:0,0,0 +chrX 3036649 . T . . END=3036660 GT:DP:GQ:MIN_DP:PL 0/0:22:45:22:0,45,675 +chrX 3036661 . T . . END=3036662 GT:DP:GQ:MIN_DP:PL 0/0:20:0:20:0,0,447 +chrX 3036663 . T . . END=3036666 GT:DP:GQ:MIN_DP:PL 0/0:20:45:20:0,45,675 +chrX 3036667 . T . . END=3036668 GT:DP:GQ:MIN_DP:PL 0/0:20:0:20:0,0,0 +chrX 3036669 . A . . END=3036680 GT:DP:GQ:MIN_DP:PL 0/0:19:22:15:0,22,501 +chrX 3036681 . T . . END=3036683 GT:DP:GQ:MIN_DP:PL 0/0:15:0:15:0,0,0 +chrX 3036684 . T . . END=3036693 GT:DP:GQ:MIN_DP:PL 0/0:15:21:15:0,21,315 +chrX 3036694 . A . . END=3036713 GT:DP:GQ:MIN_DP:PL 0/0:10:0:10:0,0,0 +chrX 3036714 . A . . END=3036717 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,315 +chrX 3036718 . T . . END=3037011 GT:DP:GQ:MIN_DP:PL 0/0:2:0:2:0,0,0 +chrX 3037012 . A . . END=3037016 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,193 +chrX 3037017 . T . . END=3037017 GT:DP:GQ:MIN_DP:PL 0/0:7:18:7:0,18,270 +chrX 3037018 . A . . END=3037018 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,203 +chrX 3037019 . A . . END=3037020 GT:DP:GQ:MIN_DP:PL 0/0:7:0:7:0,0,144 +chrX 3037021 . A . . END=3037021 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,203 +chrX 3037022 . T . . END=3037056 GT:DP:GQ:MIN_DP:PL 0/0:6:0:6:0,0,0 +chrX 3037057 . T . . END=3037058 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,183 +chrX 3037059 . T . . END=3037059 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,189 +chrX 3037060 . A . . END=3037060 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,213 +chrX 3037061 . T . . END=3037063 GT:DP:GQ:MIN_DP:PL 0/0:6:0:6:0,0,189 +chrX 3037064 . A . . END=3037065 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,213 +chrX 3037066 . T . . END=3037066 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,178 +chrX 3037067 . A . . END=3037068 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,213 +chrX 3037069 . T . . END=3037069 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,189 +chrX 3037070 . A . . END=3037070 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,193 +chrX 3037071 . T . . END=3037071 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,189 +chrX 3037072 . A . . END=3037074 GT:DP:GQ:MIN_DP:PL 0/0:8:24:8:0,24,238 +chrX 3037075 . T . . END=3037075 GT:DP:GQ:MIN_DP:PL 0/0:7:7:7:0,7,164 +chrX 3037076 . A . . END=3037076 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,203 +chrX 3037077 . A . . END=3037080 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,158 +chrX 3037081 . A . . END=3037081 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,193 +chrX 3037082 . T . . END=3037087 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,109 +chrX 3037088 . A . . END=3037090 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,223 +chrX 3037091 . T . . END=3037091 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,189 +chrX 3037092 . A . . END=3037100 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,223 +chrX 3037101 . T . . END=3037101 GT:DP:GQ:MIN_DP:PL 0/0:9:13:9:0,13,234 +chrX 3037102 . A . . END=3037118 GT:DP:GQ:MIN_DP:PL 0/0:12:24:11:0,24,342 +chrX 3037119 . A . . END=3037120 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,159 +chrX 3037121 . T . . END=3037140 GT:DP:GQ:MIN_DP:PL 0/0:15:20:14:0,20,432 +chrX 3037141 . A . . END=3037160 GT:DP:GQ:MIN_DP:PL 0/0:15:0:15:0,0,0 +chrX 3037161 . A . . END=3037184 GT:DP:GQ:MIN_DP:PL 0/0:24:28:21:0,28,651 +chrX 3037185 . T . . END=3037187 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,0 +chrX 3037188 . A . . END=3038579 GT:DP:GQ:MIN_DP:PL 0/0:30:33:29:0,33,709 +chrX 3038580 . C A,CTAA, 672.64 . AS_QUALapprox=|680|1|0;AS_VarDP=31|22|0|0;BaseQRankSum=1.025;DP=70;MQRankSum=0.000;QUALapprox=680;RAW_GT_COUNT=0,1,0;RAW_MQandDP=252000,70;ReadPosRankSum=0.072;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:31,22,0,0:53:99:680,0,1034,679,934,2111,771,1063,1931,2012:16,15,8,14 +chrX 3038581 . T . . END=3039240 GT:DP:GQ:MIN_DP:PL 0/0:62:93:62:0,93,1534 +chrX 3039241 . A G, 1557.06 . AS_QUALapprox=|1571|0;AS_VarDP=0|50|0;DP=52;QUALapprox=1571;RAW_GT_COUNT=0,0,1;RAW_MQandDP=163556,52;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1571,149,0,1571,149,1571:0,0,28,22 +chrX 3039242 . T . . END=3039260 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,116,1514 +chrX 3039261 . G GT, 907.03 . AS_QUALapprox=|921|0;AS_VarDP=0|44|0;DP=54;QUALapprox=921;RAW_GT_COUNT=0,0,1;RAW_MQandDP=186068,54;VarDP=44 GT:AD:DP:GQ:PL:SB 1/1:0,44,0:44:99:921,129,0,921,129,921:0,0,25,19 +chrX 3039262 . T . . END=3039278 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,114,1710 +chrX 3039279 . G . . END=3039280 GT:DP:GQ:MIN_DP:PL 0/0:56:0:56:0,0,848 +chrX 3039281 . G . . END=3040031 GT:DP:GQ:MIN_DP:PL 0/0:59:40:59:0,40,1245 +chrX 3040032 . A G, 2437.06 . AS_QUALapprox=|2451|0;AS_VarDP=0|55|0;DP=55;QUALapprox=2451;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,55,0:55:99:0|1:3040032_A_G:2451,166,0,2451,166,2451:3040032:0,0,26,29 +chrX 3040033 . T . . END=3040037 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 3040038 . C T, 2462.06 . AS_QUALapprox=|2476|0;AS_VarDP=0|56|0;DP=57;QUALapprox=2476;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,56,0:56:99:0|1:3040032_A_G:2476,169,0,2476,169,2476:3040032:0,0,27,29 +chrX 3040039 . A . . END=3040258 GT:DP:GQ:MIN_DP:PL 0/0:51:98:51:0,98,1370 +chrX 3040259 . C T, 1788.06 . AS_QUALapprox=|1802|0;AS_VarDP=1|55|0;BaseQRankSum=-0.288;DP=56;MQRankSum=0.000;QUALapprox=1802;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;ReadPosRankSum=-0.279;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:1,55,0:56:99:1802,133,0,1805,165,1837:1,0,29,26 +chrX 3040260 . A . . END=3041298 GT:DP:GQ:MIN_DP:PL 0/0:61:93:61:0,93,1465 +chrX 3041299 . C CT, 1071.03 . AS_QUALapprox=|1085|0;AS_VarDP=0|43|0;DP=56;QUALapprox=1085;RAW_GT_COUNT=0,0,1;RAW_MQandDP=197002,56;VarDP=43 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,43,0:43:99:0|1:3041299_C_CT:1085,129,0,1085,129,1085:3041299:0,0,25,18 +chrX 3041300 . T . . END=3041315 GT:DP:GQ:MIN_DP:PL 0/0:55:66:55:0,66,1185 +chrX 3041316 . A . . END=3041316 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1314 +chrX 3041317 . G . . END=3041819 GT:DP:GQ:MIN_DP:PL 0/0:61:98:61:0,98,1350 +chrX 3041820 . C T, 2263.06 . AS_QUALapprox=|2277|0;AS_VarDP=0|71|0;DP=74;QUALapprox=2277;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;VarDP=71 GT:AD:DP:GQ:PL:SB 1/1:0,71,0:71:99:2277,213,0,2277,213,2277:0,0,30,41 +chrX 3041821 . T . . END=3043657 GT:DP:GQ:MIN_DP:PL 0/0:55:77:55:0,77,1032 +chrX 3043658 . T C, 1608.06 . AS_QUALapprox=|1622|0;AS_VarDP=0|52|0;DP=54;QUALapprox=1622;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1622,155,0,1622,155,1622:0,0,23,29 +chrX 3043659 . T . . END=3043850 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,106,1662 +chrX 3043851 . G T, 1701.06 . AS_QUALapprox=|1715|0;AS_VarDP=0|53|0;DP=57;QUALapprox=1715;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1715,159,0,1715,159,1715:0,0,27,26 +chrX 3043852 . G . . END=3044069 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 3044070 . T C, 1691.06 . AS_QUALapprox=|1705|0;AS_VarDP=0|55|0;DP=57;QUALapprox=1705;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1705,164,0,1705,164,1705:0,0,30,25 +chrX 3044071 . G . . END=3044415 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,114,1544 +chrX 3044416 . T C, 1483.06 . AS_QUALapprox=|1497|0;AS_VarDP=0|48|0;DP=49;QUALapprox=1497;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=48 GT:AD:DP:GQ:PL:SB 1/1:0,48,0:48:99:1497,143,0,1497,143,1497:0,0,24,24 +chrX 3044417 . G . . END=3044665 GT:DP:GQ:MIN_DP:PL 0/0:45:64:45:0,64,948 +chrX 3044666 . T A, 1304.06 . AS_QUALapprox=|1318|0;AS_VarDP=0|39|0;DP=39;QUALapprox=1318;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140400,39;VarDP=39 GT:AD:DP:GQ:PL:SB 1/1:0,39,0:39:99:1318,117,0,1318,117,1318:0,0,21,18 +chrX 3044667 . G . . END=3045553 GT:DP:GQ:MIN_DP:PL 0/0:53:82:53:0,82,1116 +chrX 3045554 . CT C, 257.60 . AS_QUALapprox=|265|0;AS_VarDP=20|17|0;BaseQRankSum=2.212;DP=60;MQRankSum=-0.039;QUALapprox=265;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208257,60;ReadPosRankSum=-0.427;VarDP=37 GT:AD:DP:GQ:PL:SB 0/1:20,17,0:37:99:265,0,330,324,380,704:12,8,11,6 +chrX 3045556 . T . . END=3045641 GT:DP:GQ:MIN_DP:PL 0/0:53:92:53:0,92,1567 +chrX 3045642 . A G, 1661.06 . AS_QUALapprox=|1675|0;AS_VarDP=0|55|0;DP=56;QUALapprox=1675;RAW_GT_COUNT=0,0,1;RAW_MQandDP=199301,56;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1675,164,0,1675,164,1675:0,0,32,23 +chrX 3045643 . C . . END=3045711 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,116,1693 +chrX 3045712 . C T, 2535.06 . AS_QUALapprox=|2549|0;AS_VarDP=0|57|0;DP=57;QUALapprox=2549;RAW_GT_COUNT=0,0,1;RAW_MQandDP=202901,57;VarDP=57 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,57,0:57:99:0|1:3045712_C_T:2549,172,0,2549,172,2549:3045712:0,0,26,31 +chrX 3045713 . A G, 2535.06 . AS_QUALapprox=|2549|0;AS_VarDP=0|57|0;DP=57;QUALapprox=2549;RAW_GT_COUNT=0,0,1;RAW_MQandDP=202901,57;VarDP=57 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,57,0:57:99:0|1:3045712_C_T:2549,172,0,2549,172,2549:3045712:0,0,26,31 +chrX 3045714 . C . . END=3045715 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 3045716 . T C, 2490.06 . AS_QUALapprox=|2504|0;AS_VarDP=0|56|0;DP=58;QUALapprox=2504;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205017,58;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,56,0:56:99:0|1:3045712_C_T:2504,169,0,2504,169,2504:3045712:0,0,26,30 +chrX 3045717 . G . . END=3045943 GT:DP:GQ:MIN_DP:PL 0/0:61:79:61:0,79,1474 +chrX 3045944 . G A, 1637.06 . AS_QUALapprox=|1651|0;AS_VarDP=2|57|0;BaseQRankSum=1.880;DP=62;MQRankSum=3.674;QUALapprox=1651;RAW_GT_COUNT=0,0,1;RAW_MQandDP=218405,62;ReadPosRankSum=1.907;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:2,57,0:59:99:1651,146,0,1657,169,1680:0,2,27,30 +chrX 3045945 . T . . END=3046132 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,106,1602 +chrX 3046133 . G A, 1927.06 . AS_QUALapprox=|1941|0;AS_VarDP=1|59|0;BaseQRankSum=2.580;DP=62;MQRankSum=0.000;QUALapprox=1941;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;ReadPosRankSum=-1.473;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:1,59,0:60:99:1941,170,0,1944,177,1951:0,1,34,25 +chrX 3046134 . C . . END=3047040 GT:DP:GQ:MIN_DP:PL 0/0:56:62:56:0,62,1475 +chrX 3047041 . A G, 1787.06 . AS_QUALapprox=|1801|0;AS_VarDP=0|57|0;DP=60;QUALapprox=1801;RAW_GT_COUNT=0,0,1;RAW_MQandDP=214609,60;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1801,170,0,1801,170,1801:0,0,26,31 +chrX 3047042 . A . . END=3047124 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 3047125 . T C, 1657.06 . AS_QUALapprox=|1671|0;AS_VarDP=0|54|0;DP=57;QUALapprox=1671;RAW_GT_COUNT=0,0,1;RAW_MQandDP=203809,57;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:1671,161,0,1671,161,1671:0,0,26,28 +chrX 3047126 . G . . END=3047475 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,100,1350 +chrX 3047476 . A AG, 2186.03 . AS_QUALapprox=|2200|0;AS_VarDP=0|49|0;DP=51;QUALapprox=2200;RAW_GT_COUNT=0,0,1;RAW_MQandDP=174566,51;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,49,0:49:99:0|1:3047476_A_AG:2200,147,0,2200,147,2200:3047476:0,0,22,27 +chrX 3047477 . C . . END=3047480 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,120,1800 +chrX 3047481 . T G, 2186.06 . AS_QUALapprox=|2200|0;AS_VarDP=0|49|0;DP=49;QUALapprox=2200;RAW_GT_COUNT=0,0,1;RAW_MQandDP=167366,49;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,49,0:49:99:0|1:3047476_A_AG:2200,147,0,2200,147,2200:3047476:0,0,22,27 +chrX 3047482 . A . . END=3047484 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,120,1800 +chrX 3047485 . C T, 2213.06 . AS_QUALapprox=|2227|0;AS_VarDP=0|50|0;DP=50;QUALapprox=2227;RAW_GT_COUNT=0,0,1;RAW_MQandDP=170966,50;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,50,0:50:99:0|1:3047476_A_AG:2227,151,0,2227,151,2227:3047476:0,0,24,26 +chrX 3047486 . T . . END=3047839 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,101,1499 +chrX 3047840 . G A, 2472.06 . AS_QUALapprox=|2486|0;AS_VarDP=0|56|0;DP=56;QUALapprox=2486;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,56,0:56:99:0|1:3047840_G_A:2486,169,0,2486,169,2486:3047840:0,0,29,27 +chrX 3047841 . A . . END=3047843 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 3047844 . T C, 2585.06 . AS_QUALapprox=|2599|0;AS_VarDP=0|59|0;DP=60;QUALapprox=2599;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=59 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,59,0:59:99:0|1:3047840_G_A:2599,178,0,2599,178,2599:3047840:0,0,30,29 +chrX 3047845 . A . . END=3047904 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 3047905 . T C, 2004.06 . AS_QUALapprox=|2018|0;AS_VarDP=0|65|0;DP=66;QUALapprox=2018;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=65 GT:AD:DP:GQ:PL:SB 1/1:0,65,0:65:99:2018,194,0,2018,194,2018:0,0,36,29 +chrX 3047906 . G . . END=3047980 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 3047981 . A G, 1677.06 . AS_QUALapprox=|1691|0;AS_VarDP=0|52|0;DP=53;QUALapprox=1691;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1691,156,0,1691,156,1691:0,0,27,25 +chrX 3047982 . A . . END=3048179 GT:DP:GQ:MIN_DP:PL 0/0:54:89:54:0,89,1365 +chrX 3048180 . C T, 1950.06 . AS_QUALapprox=|1964|0;AS_VarDP=0|60|0;DP=62;QUALapprox=1964;RAW_GT_COUNT=0,0,1;RAW_MQandDP=221364,62;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:1964,180,0,1964,180,1964:0,0,28,32 +chrX 3048181 . G . . END=3048207 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 3048208 . T A, 1989.06 . AS_QUALapprox=|2003|0;AS_VarDP=0|63|0;DP=67;QUALapprox=2003;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=63 GT:AD:DP:GQ:PL:SB 1/1:0,63,0:63:99:2003,189,0,2003,189,2003:0,0,35,28 +chrX 3048209 . C . . END=3048440 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 3048441 . T C, 2330.06 . AS_QUALapprox=|2344|0;AS_VarDP=0|73|0;DP=74;QUALapprox=2344;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;VarDP=73 GT:AD:DP:GQ:PL:SB 1/1:0,73,0:73:99:2344,219,0,2344,219,2344:0,0,33,40 +chrX 3048442 . C . . END=3048964 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 3048965 . T A, 1663.06 . AS_QUALapprox=|1677|0;AS_VarDP=0|50|0;DP=52;QUALapprox=1677;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187081,52;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1677,150,0,1677,150,1677:0,0,27,23 +chrX 3048966 . T . . END=3048981 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 3048982 . C T, 828.64 . AS_QUALapprox=|836|0;AS_VarDP=22|30|0;BaseQRankSum=0.226;DP=54;MQRankSum=-0.817;QUALapprox=836;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194281,54;ReadPosRankSum=0.741;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:22,30,0:52:99:836,0,554,901,644,1545:12,10,16,14 +chrX 3048983 . C . . END=3049014 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,113,1554 +chrX 3049015 . A G, 1549.06 . AS_QUALapprox=|1563|0;AS_VarDP=0|48|0;DP=50;QUALapprox=1563;RAW_GT_COUNT=0,0,1;RAW_MQandDP=177881,50;VarDP=48 GT:AD:DP:GQ:PL:SB 1/1:0,48,0:48:99:1563,144,0,1563,144,1563:0,0,25,23 +chrX 3049016 . G . . END=3049095 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 3049096 . G A, 2121.06 . AS_QUALapprox=|2135|0;AS_VarDP=0|64|0;DP=67;QUALapprox=2135;RAW_GT_COUNT=0,0,1;RAW_MQandDP=239081,67;VarDP=64 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:2135,192,0,2135,192,2135:0,0,37,27 +chrX 3049097 . T . . END=3049134 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 3049135 . A G, 2070.06 . AS_QUALapprox=|2084|0;AS_VarDP=0|64|0;DP=67;QUALapprox=2084;RAW_GT_COUNT=0,0,1;RAW_MQandDP=239200,67;VarDP=64 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:2084,192,0,2084,192,2084:0,0,34,30 +chrX 3049136 . T . . END=3049333 GT:DP:GQ:MIN_DP:PL 0/0:60:97:60:0,97,1390 +chrX 3049334 . A . . END=3049334 GT:DP:GQ:MIN_DP:PL 0/0:43:10:43:0,10,1136 +chrX 3049335 . G . . END=3049337 GT:DP:GQ:MIN_DP:PL 0/0:47:96:47:0,96,1294 +chrX 3049338 . T TG, 18.60 . AS_QUALapprox=|26|0;AS_VarDP=36|6|0;BaseQRankSum=-0.652;DP=49;MQRankSum=-2.381;QUALapprox=26;RAW_GT_COUNT=0,1,0;RAW_MQandDP=175201,49;ReadPosRankSum=1.457;VarDP=42 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:36,6,0:42:26:0|1:3049338_T_TG:26,0,1345,134,1362,1495:3049338:26,10,0,6 +chrX 3049339 . G . . END=3049344 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,120,1800 +chrX 3049345 . T G, 25.64 . AS_QUALapprox=|33|0;AS_VarDP=36|7|0;BaseQRankSum=-2.126;DP=47;MQRankSum=-2.205;QUALapprox=33;RAW_GT_COUNT=0,1,0;RAW_MQandDP=168001,47;ReadPosRankSum=1.547;VarDP=43 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:36,7,0:43:33:0|1:3049338_T_TG:33,0,1342,140,1362,1502:3049338:26,10,0,7 +chrX 3049346 . G . . END=3049658 GT:DP:GQ:MIN_DP:PL 0/0:43:38:42:0,38,1095 +chrX 3049659 . A G, 2051.06 . AS_QUALapprox=|2065|0;AS_VarDP=0|62|0;DP=63;QUALapprox=2065;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216053,63;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:0,62,0:62:99:2065,186,0,2065,186,2065:0,0,32,30 +chrX 3049660 . T . . END=3049928 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 3049929 . T C, 1683.06 . AS_QUALapprox=|1697|0;AS_VarDP=1|54|0;BaseQRankSum=2.146;DP=56;MQRankSum=0.000;QUALapprox=1697;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;ReadPosRankSum=0.095;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:1,54,0:55:99:1697,154,0,1699,161,1706:1,0,36,18 +chrX 3049930 . G . . END=3050068 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1583 +chrX 3050069 . G C, 1749.06 . AS_QUALapprox=|1763|0;AS_VarDP=0|53|0;DP=56;QUALapprox=1763;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1763,159,0,1763,159,1763:0,0,17,36 +chrX 3050070 . C . . END=3050390 GT:DP:GQ:MIN_DP:PL 0/0:56:97:56:0,97,1339 +chrX 3050391 . G A, 1551.06 . AS_QUALapprox=|1565|0;AS_VarDP=0|49|0;DP=52;QUALapprox=1565;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1565,147,0,1565,147,1565:0,0,23,26 +chrX 3050392 . A . . END=3050544 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,109,1573 +chrX 3050545 . T . . END=3050545 GT:DP:GQ:MIN_DP:PL 0/0:52:12:52:0,12,1308 +chrX 3050546 . C CA, 379.60 . AS_QUALapprox=|387|0;AS_VarDP=17|24|0;BaseQRankSum=0.018;DP=60;MQRankSum=-2.968;QUALapprox=387;RAW_GT_COUNT=0,1,0;RAW_MQandDP=197093,60;ReadPosRankSum=-0.305;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:17,24,0:41:99:387,0,258,438,329,767:11,6,15,9 +chrX 3050547 . A . . END=3050606 GT:DP:GQ:MIN_DP:PL 0/0:53:95:53:0,95,1419 +chrX 3050607 . T C, 1543.06 . AS_QUALapprox=|1557|0;AS_VarDP=0|50|0;DP=53;QUALapprox=1557;RAW_GT_COUNT=0,0,1;RAW_MQandDP=159095,53;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1557,149,0,1557,149,1557:0,0,26,24 +chrX 3050608 . G . . END=3050873 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 3050874 . G T, 1833.06 . AS_QUALapprox=|1847|0;AS_VarDP=0|55|0;DP=55;QUALapprox=1847;RAW_GT_COUNT=0,0,1;RAW_MQandDP=195577,55;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1847,165,0,1847,165,1847:0,0,29,26 +chrX 3050875 . T . . END=3050916 GT:DP:GQ:MIN_DP:PL 0/0:54:92:54:0,92,1529 +chrX 3050917 . C T, 1726.06 . AS_QUALapprox=|1740|0;AS_VarDP=0|52|0;DP=53;QUALapprox=1740;RAW_GT_COUNT=0,0,1;RAW_MQandDP=186660,53;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1740,156,0,1740,156,1740:0,0,28,24 +chrX 3050918 . C . . END=3052689 GT:DP:GQ:MIN_DP:PL 0/0:42:37:37:0,37,977 +chrX 3052690 . CA C, 645.03 . AS_QUALapprox=|659|0;AS_VarDP=1|29|0;BaseQRankSum=-0.824;DP=49;MQRankSum=0.000;QUALapprox=659;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;ReadPosRankSum=1.387;VarDP=30 GT:AD:DP:GQ:PL:SB 1/1:1,29,0:30:66:659,66,0,663,87,683:1,0,9,20 +chrX 3052692 . A . . END=3053348 GT:DP:GQ:MIN_DP:PL 0/0:52:63:52:0,63,1125 +chrX 3053349 . G T, 9.65 . AS_QUALapprox=|17|0;AS_VarDP=23|15|0;BaseQRankSum=1.199;DP=46;MQRankSum=-1.184;QUALapprox=17;RAW_GT_COUNT=0,1,0;RAW_MQandDP=164916,46;ReadPosRankSum=1.255;VarDP=38 GT:AD:DP:GQ:PL:SB 0/1:23,15,0:38:17:17,0,538,84,564,648:11,12,15,0 +chrX 3053350 . A . . END=3053409 GT:DP:GQ:MIN_DP:PL 0/0:27:60:27:0,60,759 +chrX 3053410 . A C, 1102.06 . AS_QUALapprox=|1116|0;AS_VarDP=0|33|0;DP=34;QUALapprox=1116;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=33 GT:AD:DP:GQ:PL:SB 1/1:0,33,0:33:99:1116,99,0,1116,99,1116:0,0,18,15 +chrX 3053411 . C . . END=3053638 GT:DP:GQ:MIN_DP:PL 0/0:53:90:53:0,90,1035 +chrX 3053639 . C T, 1515.06 . AS_QUALapprox=|1529|0;AS_VarDP=0|46|0;DP=47;QUALapprox=1529;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1529,138,0,1529,138,1529:0,0,29,17 +chrX 3053640 . G . . END=3053757 GT:DP:GQ:MIN_DP:PL 0/0:47:69:47:0,69,1308 +chrX 3053758 . A AT, 250.60 . AS_QUALapprox=|258|0;AS_VarDP=12|17|0;BaseQRankSum=0.627;DP=51;MQRankSum=-1.159;QUALapprox=258;RAW_GT_COUNT=0,1,0;RAW_MQandDP=175857,51;ReadPosRankSum=-0.421;VarDP=29 GT:AD:DP:GQ:PL:SB 0/1:12,17,0:29:99:258,0,164,293,215,508:2,10,9,8 +chrX 3053759 . T . . END=3053778 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,114,1710 +chrX 3053779 . G . . END=3053779 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,1210 +chrX 3053780 . A . . END=3055334 GT:DP:GQ:MIN_DP:PL 0/0:36:24:34:0,24,868 +chrX 3055335 . T . . END=3055335 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,890 +chrX 3055336 . C . . END=3055341 GT:DP:GQ:MIN_DP:PL 0/0:38:78:38:0,78,1156 +chrX 3055342 . C . . END=3055342 GT:DP:GQ:MIN_DP:PL 0/0:43:11:43:0,11,709 +chrX 3055343 . A . . END=3061627 GT:DP:GQ:MIN_DP:PL 0/0:57:70:57:0,70,1140 +chrX 3061628 . A C, 1612.06 . AS_QUALapprox=|1626|0;AS_VarDP=1|50|0;BaseQRankSum=-0.477;DP=53;MQRankSum=0.000;QUALapprox=1626;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190009,53;ReadPosRankSum=1.325;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:1,50,0:51:99:1626,125,0,1629,150,1654:0,1,24,26 +chrX 3061629 . A . . END=3065272 GT:DP:GQ:MIN_DP:PL 0/0:54:49:54:0,49,855 +chrX 3065273 . C . . END=3065273 GT:DP:GQ:MIN_DP:PL 0/0:27:7:27:0,7,730 +chrX 3065274 . G . . END=3065283 GT:DP:GQ:MIN_DP:PL 0/0:24:30:24:0,30,651 +chrX 3065284 . T . . END=3065284 GT:DP:GQ:MIN_DP:PL 0/0:23:0:23:0,0,352 +chrX 3065285 . G . . END=3065288 GT:DP:GQ:MIN_DP:PL 0/0:37:93:37:0,93,1038 +chrX 3065289 . T . . END=3065289 GT:DP:GQ:MIN_DP:PL 0/0:29:0:29:0,0,343 +chrX 3065290 . G . . END=3065296 GT:DP:GQ:MIN_DP:PL 0/0:39:64:39:0,64,869 +chrX 3065297 . T . . END=3065297 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,408 +chrX 3065298 . G . . END=3066911 GT:DP:GQ:MIN_DP:PL 0/0:57:69:57:0,69,1056 +chrX 3066912 . CT C, 809.03 . AS_QUALapprox=|823|0;AS_VarDP=0|33|0;DP=49;QUALapprox=823;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=33 GT:AD:DP:GQ:PL:SB 1/1:0,33,0:33:99:823,99,0,823,99,823:0,0,12,21 +chrX 3066914 . T . . END=3067415 GT:DP:GQ:MIN_DP:PL 0/0:50:26:44:0,26,1022 +chrX 3067416 . C T, 1579.06 . AS_QUALapprox=|1593|0;AS_VarDP=0|48|0;DP=51;QUALapprox=1593;RAW_GT_COUNT=0,0,1;RAW_MQandDP=182916,51;VarDP=48 GT:AD:DP:GQ:PL:SB 1/1:0,48,0:48:99:1593,144,0,1593,144,1593:0,0,24,24 +chrX 3067417 . A . . END=3067855 GT:DP:GQ:MIN_DP:PL 0/0:50:94:50:0,94,1176 +chrX 3067856 . C . . END=3067856 GT:DP:GQ:MIN_DP:PL 0/0:46:1:46:0,1,1153 +chrX 3067857 . A . . END=3070367 GT:DP:GQ:MIN_DP:PL 0/0:62:78:62:0,78,1254 +chrX 3070368 . T C, 1345.06 . AS_QUALapprox=|1359|0;AS_VarDP=0|42|0;DP=44;QUALapprox=1359;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158400,44;VarDP=42 GT:AD:DP:GQ:PL:SB 1/1:0,42,0:42:99:1359,126,0,1359,126,1359:0,0,23,19 +chrX 3070369 . G . . END=3070589 GT:DP:GQ:MIN_DP:PL 0/0:47:70:47:0,70,1320 +chrX 3070590 . A T, 1808.06 . AS_QUALapprox=|1822|0;AS_VarDP=0|55|0;DP=56;QUALapprox=1822;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1822,165,0,1822,165,1822:0,0,31,24 +chrX 3070591 . T . . END=3070937 GT:DP:GQ:MIN_DP:PL 0/0:58:78:58:0,78,1362 +chrX 3070938 . GGT G, 829.03 . AS_QUALapprox=|843|0;AS_VarDP=0|27|0;DP=52;QUALapprox=843;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=27 GT:AD:DP:GQ:PL:SB 1/1:0,27,0:27:82:843,82,0,843,82,843:0,0,17,10 +chrX 3070941 . G . . END=3070993 GT:DP:GQ:MIN_DP:PL 0/0:44:81:44:0,81,1215 +chrX 3070994 . GGATA G, 1697.03 . AS_QUALapprox=|1711|0;AS_VarDP=1|39|0;BaseQRankSum=-0.520;DP=48;MQRankSum=0.000;QUALapprox=1711;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;ReadPosRankSum=1.517;VarDP=40 GT:AD:DP:GQ:PL:SB 1/1:1,39,0:40:76:1711,76,0,1714,118,1756:1,0,23,16 +chrX 3070999 . G . . END=3073612 GT:DP:GQ:MIN_DP:PL 0/0:56:50:56:0,50,931 +chrX 3073613 . A . . END=3073613 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,1106 +chrX 3073614 . A . . END=3073616 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,100,1532 +chrX 3073617 . T . . END=3073618 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,976 +chrX 3073619 . T . . END=3073622 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,99,1542 +chrX 3073623 . A . . END=3073623 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,1108 +chrX 3073624 . A . . END=3073624 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 3073625 . T . . END=3073626 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,1046 +chrX 3073627 . T . . END=3073628 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 3073629 . T . . END=3073630 GT:DP:GQ:MIN_DP:PL 0/0:50:0:50:0,0,987 +chrX 3073631 . T . . END=3073634 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 3073635 . A . . END=3073635 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,997 +chrX 3073636 . A . . END=3073636 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 3073637 . T . . END=3073639 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1018 +chrX 3073640 . A . . END=3073642 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 3073643 . T . . END=3073643 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,882 +chrX 3073644 . A . . END=3073644 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 3073645 . T . . END=3073647 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,794 +chrX 3073648 . A ATAATTATAAATATATAATTAAATATATAATTAATAAATAT, 527.60 . AS_QUALapprox=|535|0;AS_VarDP=13|20|0;BaseQRankSum=-1.887;DP=58;MQRankSum=-1.404;QUALapprox=535;RAW_GT_COUNT=0,1,0;RAW_MQandDP=204102,58;ReadPosRankSum=-3.272;VarDP=33 GT:AD:DP:GQ:PL:SB 0/1:13,20,0:33:99:535,0,418,579,477,1056:8,5,7,13 +chrX 3073649 . T . . END=3073688 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,117,1755 +chrX 3073689 . A . . END=3073690 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,923 +chrX 3073691 . A . . END=3073702 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,119,1667 +chrX 3073703 . G . . END=3073703 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,967 +chrX 3073704 . A . . END=3073704 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 3073705 . T . . END=3073705 GT:DP:GQ:MIN_DP:PL 0/0:54:0:54:0,0,1171 +chrX 3073706 . T . . END=3073708 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 3073709 . T . . END=3073709 GT:DP:GQ:MIN_DP:PL 0/0:53:0:53:0,0,1048 +chrX 3073710 . A . . END=3073710 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 3073711 . A . . END=3073716 GT:DP:GQ:MIN_DP:PL 0/0:53:0:53:0,0,1220 +chrX 3073717 . A . . END=3073717 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 3073718 . A . . END=3073720 GT:DP:GQ:MIN_DP:PL 0/0:53:0:53:0,0,1294 +chrX 3073721 . A . . END=3073723 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 3073724 . T . . END=3073724 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,1275 +chrX 3073725 . A . . END=3073726 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 3073727 . T . . END=3073728 GT:DP:GQ:MIN_DP:PL 0/0:52:0:52:0,0,1304 +chrX 3073729 . A . . END=3073731 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 3073732 . A . . END=3073741 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1193 +chrX 3073742 . A . . END=3073743 GT:DP:GQ:MIN_DP:PL 0/0:53:31:50:0,31,1369 +chrX 3073744 . T . . END=3073744 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1316 +chrX 3073745 . T . . END=3073746 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,117,1755 +chrX 3073747 . A . . END=3073749 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1340 +chrX 3073750 . A . . END=3075487 GT:DP:GQ:MIN_DP:PL 0/0:50:34:46:0,34,1210 +chrX 3075488 . G GTC, 1892.03 . AS_QUALapprox=|1906|0;AS_VarDP=0|45|0;DP=49;QUALapprox=1906;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=45 GT:AD:DP:GQ:PL:SB 1/1:0,45,0:45:99:1906,135,0,1907,135,1907:0,0,17,28 +chrX 3075489 . T . . END=3075740 GT:DP:GQ:MIN_DP:PL 0/0:41:24:41:0,24,1036 +chrX 3075741 . G T, 1666.06 . AS_QUALapprox=|1680|0;AS_VarDP=0|51|0;DP=52;QUALapprox=1680;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1680,152,0,1680,152,1680:0,0,28,23 +chrX 3075742 . A . . END=3075896 GT:DP:GQ:MIN_DP:PL 0/0:49:30:46:0,30,1060 +chrX 3075897 . CTCTG C, 2060.03 . AS_QUALapprox=|2074|0;AS_VarDP=0|47|0;DP=54;QUALapprox=2074;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194164,54;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:2074,142,0,2074,142,2074:0,0,25,22 +chrX 3075902 . T . . END=3075982 GT:DP:GQ:MIN_DP:PL 0/0:49:87:49:0,87,1108 +chrX 3075983 . G GTC, 2536.03 . AS_QUALapprox=|2550|0;AS_VarDP=0|62|0;DP=64;QUALapprox=2550;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230164,64;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:0,62,0:62:99:2550,186,0,2550,186,2550:0,0,33,29 +chrX 3075984 . T . . END=3076088 GT:DP:GQ:MIN_DP:PL 0/0:71:42:71:0,42,1659 +chrX 3076089 . A . . END=3076089 GT:DP:GQ:MIN_DP:PL 0/0:58:11:58:0,11,1419 +chrX 3076090 . T . . END=3076335 GT:DP:GQ:MIN_DP:PL 0/0:58:54:58:0,54,1343 +chrX 3076336 . GTC G, 1484.03 . AS_QUALapprox=|1498|0;AS_VarDP=1|39|0;DP=49;MQRankSum=0.000;QUALapprox=1498;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=40 GT:AD:DP:GQ:PL:SB 1/1:1,39,0:40:99:1498,111,0,1500,118,1507:0,1,17,22 +chrX 3076339 . T . . END=3076392 GT:DP:GQ:MIN_DP:PL 0/0:39:81:39:0,81,937 +chrX 3076393 . T C, 968.06 . AS_QUALapprox=|982|0;AS_VarDP=0|32|0;DP=32;QUALapprox=982;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=32 GT:AD:DP:GQ:PL:SB 1/1:0,32,0:32:95:982,95,0,982,95,982:0,0,14,18 +chrX 3076394 . G . . END=3076427 GT:DP:GQ:MIN_DP:PL 0/0:34:28:34:0,28,823 +chrX 3076428 . T . . END=3076428 GT:DP:GQ:MIN_DP:PL 0/0:31:19:31:0,19,839 +chrX 3076429 . C . . END=3077035 GT:DP:GQ:MIN_DP:PL 0/0:32:30:30:0,30,797 +chrX 3077036 . G A, 1537.06 . AS_QUALapprox=|1551|0;AS_VarDP=0|50|0;DP=53;QUALapprox=1551;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1551,148,0,1551,148,1551:0,0,30,20 +chrX 3077037 . T . . END=3077553 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,113,1409 +chrX 3077554 . G A, 1469.06 . AS_QUALapprox=|1483|0;AS_VarDP=0|47|0;DP=49;QUALapprox=1483;RAW_GT_COUNT=0,0,1;RAW_MQandDP=174400,49;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1483,140,0,1483,140,1483:0,0,24,23 +chrX 3077555 . C . . END=3077777 GT:DP:GQ:MIN_DP:PL 0/0:61:35:59:0,35,1323 +chrX 3077778 . A . . END=3077778 GT:DP:GQ:MIN_DP:PL 0/0:63:0:63:0,0,1562 +chrX 3077779 . T . . END=3077785 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,102,1530 +chrX 3077786 . T . . END=3077786 GT:DP:GQ:MIN_DP:PL 0/0:60:0:60:0,0,1537 +chrX 3077787 . T . . END=3077787 GT:DP:GQ:MIN_DP:PL 0/0:59:84:59:0,84,1260 +chrX 3077788 . A . . END=3077788 GT:DP:GQ:MIN_DP:PL 0/0:59:3:59:0,3,1593 +chrX 3077789 . T TTTATTATTA,TTTTTTATTATTA,TTTATTATTATTATTATTA,TTTTTTATTATTATTATTATTA, 1717.02 . AS_QUALapprox=|202|1121|781|410|0;AS_VarDP=0|0|19|14|0|0;DP=54;QUALapprox=1734;RAW_GT_COUNT=0,0,1;RAW_MQandDP=185462,54;VarDP=33 GT:AD:DP:GQ:PL:SB 2/3:0,0,19,14,0,0:33:99:1734,1554,1532,613,532,640,1005,984,0,953,1324,1233,662,747,1390,1635,1545,667,1012,1378,1675:0,0,20,13 +chrX 3077790 . T . . END=3077856 GT:DP:GQ:MIN_DP:PL 0/0:41:73:41:0,73,1034 +chrX 3077857 . T G, 1341.06 . AS_QUALapprox=|1355|0;AS_VarDP=0|42|0;DP=45;QUALapprox=1355;RAW_GT_COUNT=0,0,1;RAW_MQandDP=157361,45;VarDP=42 GT:AD:DP:GQ:PL:SB 1/1:0,42,0:42:99:1355,126,0,1355,126,1355:0,0,22,20 +chrX 3077858 . C . . END=3078078 GT:DP:GQ:MIN_DP:PL 0/0:44:83:44:0,83,1170 +chrX 3078079 . T C, 1493.06 . AS_QUALapprox=|1507|0;AS_VarDP=0|49|0;DP=51;QUALapprox=1507;RAW_GT_COUNT=0,0,1;RAW_MQandDP=182458,51;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1507,146,0,1507,146,1507:0,0,19,30 +chrX 3078080 . A . . END=3078120 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,117,1469 +chrX 3078121 . A G, 1623.06 . AS_QUALapprox=|1637|0;AS_VarDP=0|49|0;DP=51;QUALapprox=1637;RAW_GT_COUNT=0,0,1;RAW_MQandDP=182809,51;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1637,147,0,1637,147,1637:0,0,24,25 +chrX 3078122 . A . . END=3078417 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,107,1539 +chrX 3078418 . G A, 2020.06 . AS_QUALapprox=|2034|0;AS_VarDP=0|61|0;DP=61;QUALapprox=2034;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=61 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:2034,183,0,2034,183,2034:0,0,34,27 +chrX 3078419 . C . . END=3079027 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,117,1800 +chrX 3079028 . C T, 1914.06 . AS_QUALapprox=|1928|0;AS_VarDP=0|60|0;DP=65;QUALapprox=1928;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:1928,179,0,1928,179,1928:0,0,27,33 +chrX 3079029 . A . . END=3079341 GT:DP:GQ:MIN_DP:PL 0/0:61:35:58:0,35,1633 +chrX 3079342 . ATT A, 748.03 . AS_QUALapprox=|762|0;AS_VarDP=0|25|0;DP=54;QUALapprox=762;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190400,54;VarDP=25 GT:AD:DP:GQ:PL:SB 1/1:0,25,0:25:75:762,75,0,762,75,762:0,0,11,14 +chrX 3079345 . T . . END=3079360 GT:DP:GQ:MIN_DP:PL 0/0:62:96:62:0,96,1440 +chrX 3079361 . T . . END=3079363 GT:DP:GQ:MIN_DP:PL 0/0:52:0:52:0,0,1162 +chrX 3079364 . A . . END=3079960 GT:DP:GQ:MIN_DP:PL 0/0:24:20:23:0,20,661 +chrX 3079961 . C . . END=3079961 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,751 +chrX 3079962 . A . . END=3079963 GT:DP:GQ:MIN_DP:PL 0/0:33:82:33:0,82,1023 +chrX 3079964 . C . . END=3079964 GT:DP:GQ:MIN_DP:PL 0/0:29:0:29:0,0,601 +chrX 3079965 . A . . END=3079966 GT:DP:GQ:MIN_DP:PL 0/0:34:84:34:0,84,1017 +chrX 3079967 . C . . END=3079967 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,566 +chrX 3079968 . A . . END=3079969 GT:DP:GQ:MIN_DP:PL 0/0:35:90:35:0,90,1350 +chrX 3079970 . CA C,CAAA, 19.60 . AS_QUALapprox=|27|0|0;AS_VarDP=10|5|0|0;BaseQRankSum=-0.696;DP=25;MQRankSum=0.000;QUALapprox=27;RAW_GT_COUNT=0,1,0;RAW_MQandDP=87040,25;ReadPosRankSum=0.212;VarDP=15 GT:AD:DP:GQ:PL:SB 0/1:10,5,0,0:15:27:27,0,219,75,254,630,74,253,512,482:9,1,4,1 +chrX 3079972 . A . . END=3080004 GT:DP:GQ:MIN_DP:PL 0/0:26:33:23:0,33,630 +chrX 3080005 . A G, 720.14 . AS_QUALapprox=|734|0;AS_VarDP=3|28|0;BaseQRankSum=-0.731;DP=32;MQRankSum=0.000;QUALapprox=734;RAW_GT_COUNT=0,0,1;RAW_MQandDP=112384,32;ReadPosRankSum=-2.006;VarDP=31 GT:AD:DP:GQ:PL:SB 1/1:3,28,0:31:12:734,12,0,743,83,814:2,1,24,4 +chrX 3080006 . A . . END=3080014 GT:DP:GQ:MIN_DP:PL 0/0:32:66:32:0,66,990 +chrX 3080015 . A . . END=3080015 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,889 +chrX 3080016 . G . . END=3080254 GT:DP:GQ:MIN_DP:PL 0/0:53:33:39:0,33,951 +chrX 3080255 . CATGAGGTCCGGAGATGCAGACCATCCTGGCCAACATG C, 2677.03 . AS_QUALapprox=|2691|0;AS_VarDP=0|60|0;DP=63;QUALapprox=2691;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:2691,182,0,2691,182,2691:0,0,27,33 +chrX 3080293 . A . . END=3080432 GT:DP:GQ:MIN_DP:PL 0/0:61:63:61:0,63,1371 +chrX 3080433 . T C, 1682.06 . AS_QUALapprox=|1696|0;AS_VarDP=0|52|0;DP=53;QUALapprox=1696;RAW_GT_COUNT=0,0,1;RAW_MQandDP=185173,53;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1696,156,0,1696,156,1696:0,0,20,32 +chrX 3080434 . G . . END=3080458 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,115,1618 +chrX 3080459 . C T, 1699.06 . AS_QUALapprox=|1713|0;AS_VarDP=0|51|0;DP=55;QUALapprox=1713;RAW_GT_COUNT=0,0,1;RAW_MQandDP=193489,55;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1713,153,0,1713,153,1713:0,0,27,24 +chrX 3080460 . G . . END=3080471 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,102,1344 +chrX 3080472 . C CA, 934.03 . AS_QUALapprox=|948|0;AS_VarDP=1|39|0;BaseQRankSum=-0.427;DP=52;MQRankSum=0.000;QUALapprox=948;RAW_GT_COUNT=0,0,1;RAW_MQandDP=185200,52;ReadPosRankSum=1.258;VarDP=40 GT:AD:DP:GQ:PL:SB 1/1:1,39,0:40:92:948,92,0,951,115,974:1,0,23,16 +chrX 3080473 . A . . END=3081099 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,111,1434 +chrX 3081100 . G A, 2100.06 . AS_QUALapprox=|2114|0;AS_VarDP=0|63|0;DP=65;QUALapprox=2114;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=63 GT:AD:DP:GQ:PL:SB 1/1:0,63,0:63:99:2114,189,0,2114,189,2114:0,0,25,38 +chrX 3081101 . C . . END=3081459 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,115,1588 +chrX 3081460 . T C, 1573.06 . AS_QUALapprox=|1587|0;AS_VarDP=0|51|0;DP=53;QUALapprox=1587;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1587,153,0,1587,153,1587:0,0,28,23 +chrX 3081461 . C . . END=3083518 GT:DP:GQ:MIN_DP:PL 0/0:58:87:58:0,87,1305 +chrX 3083519 . TATCTATCTATCC T, 503.60 . AS_QUALapprox=|511|0;AS_VarDP=19|14|0;BaseQRankSum=1.277;DP=49;MQRankSum=0.000;QUALapprox=511;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=1.093;VarDP=33 GT:AD:DP:GQ:PL:SB 0/1:19,14,0:33:99:511,0,713,568,756,1324:11,8,1,13 +chrX 3083523 . TATCTATCC *,T, 459.01 . AS_QUALapprox=|0|424|0;AS_VarDP=0|14|15|0;DP=48;QUALapprox=985;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=29 GT:AD:DP:GQ:PL:SB 1/2:0,14,15,0:29:99:985,469,710,561,0,563,1033,630,599,1180:0,0,8,21 +chrX 3083532 . A . . END=3084177 GT:DP:GQ:MIN_DP:PL 0/0:53:59:53:0,59,1308 +chrX 3084178 . T C, 1878.06 . AS_QUALapprox=|1892|0;AS_VarDP=0|59|0;DP=61;QUALapprox=1892;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1892,176,0,1892,176,1892:0,0,29,30 +chrX 3084179 . T . . END=3084645 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,102,1526 +chrX 3084646 . A G, 2011.06 . AS_QUALapprox=|2025|0;AS_VarDP=0|61|0;DP=63;QUALapprox=2025;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=61 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:2025,182,0,2025,182,2025:0,0,27,34 +chrX 3084647 . G . . END=3085359 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,100,1360 +chrX 3085360 . A T, 1612.06 . AS_QUALapprox=|1626|0;AS_VarDP=0|51|0;DP=53;QUALapprox=1626;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1626,153,0,1626,153,1626:0,0,25,26 +chrX 3085361 . A . . END=3086601 GT:DP:GQ:MIN_DP:PL 0/0:64:67:64:0,67,1245 +chrX 3086602 . G A, 1902.06 . AS_QUALapprox=|1916|0;AS_VarDP=1|60|0;BaseQRankSum=-0.453;DP=63;MQRankSum=0.000;QUALapprox=1916;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;ReadPosRankSum=0.057;VarDP=61 GT:AD:DP:GQ:PL:SB 1/1:1,60,0:61:99:1916,148,0,1919,180,1950:0,1,28,32 +chrX 3086603 . T . . END=3086660 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 3086661 . CA C, 1698.03 . AS_QUALapprox=|1712|0;AS_VarDP=0|55|0;DP=62;QUALapprox=1712;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1712,165,0,1712,165,1712:0,0,27,28 +chrX 3086663 . A . . END=3087200 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,116,1673 +chrX 3087201 . G T, 1937.06 . AS_QUALapprox=|1951|0;AS_VarDP=0|59|0;DP=62;QUALapprox=1951;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1951,177,0,1951,177,1951:0,0,29,30 +chrX 3087202 . A . . END=3087368 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 3087369 . C T, 668.64 . AS_QUALapprox=|676|0;AS_VarDP=30|26|0;BaseQRankSum=-0.778;DP=57;MQRankSum=0.000;QUALapprox=676;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=0.041;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:30,26,0:56:99:676,0,803,765,881,1647:15,15,14,12 +chrX 3087370 . C . . END=3088563 GT:DP:GQ:MIN_DP:PL 0/0:61:59:61:0,59,833 +chrX 3088564 . CT C, 684.03 . AS_QUALapprox=|698|0;AS_VarDP=0|27|0;DP=34;QUALapprox=698;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=27 GT:AD:DP:GQ:PL:SB 1/1:0,27,0:27:81:698,81,0,698,81,698:0,0,15,12 +chrX 3088566 . T . . END=3089438 GT:DP:GQ:MIN_DP:PL 0/0:55:79:55:0,79,1080 +chrX 3089439 . G T, 1506.06 . AS_QUALapprox=|1520|0;AS_VarDP=0|48|0;DP=50;QUALapprox=1520;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=48 GT:AD:DP:GQ:PL:SB 1/1:0,48,0:48:99:1520,143,0,1520,143,1520:0,0,19,29 +chrX 3089440 . T . . END=3090230 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 3090231 . T C, 1618.06 . AS_QUALapprox=|1632|0;AS_VarDP=0|50|0;DP=52;QUALapprox=1632;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1632,149,0,1632,149,1632:0,0,23,27 +chrX 3090232 . A . . END=3090318 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,115,1582 +chrX 3090319 . T A, 1564.06 . AS_QUALapprox=|1578|0;AS_VarDP=0|46|0;DP=48;QUALapprox=1578;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1578,138,0,1578,138,1578:0,0,30,16 +chrX 3090320 . G . . END=3091046 GT:DP:GQ:MIN_DP:PL 0/0:55:73:55:0,73,1320 +chrX 3091047 . GCTAT G, 2101.03 . AS_QUALapprox=|2115|0;AS_VarDP=0|47|0;DP=50;QUALapprox=2115;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:2115,142,0,2115,142,2115:0,0,25,22 +chrX 3091052 . C . . END=3091822 GT:DP:GQ:MIN_DP:PL 0/0:64:91:64:0,91,1384 +chrX 3091823 . T TGATA, 2065.03 . AS_QUALapprox=|2079|0;AS_VarDP=0|47|0;DP=50;QUALapprox=2079;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:2079,141,0,2079,141,2080:0,0,17,30 +chrX 3091824 . G . . END=3091828 GT:DP:GQ:MIN_DP:PL 0/0:50:49:50:0,49,1404 +chrX 3091829 . T . . END=3091829 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1284 +chrX 3091830 . T . . END=3092166 GT:DP:GQ:MIN_DP:PL 0/0:49:43:49:0,43,1195 +chrX 3092167 . TGATA T, 1269.03 . AS_QUALapprox=|1283|0;AS_VarDP=0|32|0;DP=44;QUALapprox=1283;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158400,44;VarDP=32 GT:AD:DP:GQ:PL:SB 1/1:0,32,0:32:96:1283,96,0,1283,96,1283:0,0,16,16 +chrX 3092172 . G . . END=3092214 GT:DP:GQ:MIN_DP:PL 0/0:38:78:38:0,78,1052 +chrX 3092215 . A G, 1232.06 . AS_QUALapprox=|1246|0;AS_VarDP=0|37|0;DP=39;QUALapprox=1246;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140400,39;VarDP=37 GT:AD:DP:GQ:PL:SB 1/1:0,37,0:37:99:1246,111,0,1246,111,1246:0,0,15,22 +chrX 3092216 . C . . END=3092458 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,100,1211 +chrX 3092459 . C A, 1588.06 . AS_QUALapprox=|1602|0;AS_VarDP=0|47|0;DP=49;QUALapprox=1602;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1602,141,0,1602,141,1602:0,0,26,21 +chrX 3092460 . C . . END=3092554 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,115,1736 +chrX 3092555 . C T, 942.64 . AS_QUALapprox=|950|0;AS_VarDP=19|35|0;BaseQRankSum=-0.170;DP=56;MQRankSum=0.000;QUALapprox=950;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=1.105;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:19,35,0:54:99:950,0,429,1007,534,1540:10,9,11,24 +chrX 3092556 . G . . END=3092652 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 3092653 . G T, 1650.06 . AS_QUALapprox=|1664|0;AS_VarDP=1|51|0;BaseQRankSum=2.945;DP=56;MQRankSum=0.000;QUALapprox=1664;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;ReadPosRankSum=0.533;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:1,51,0:52:99:1664,145,0,1666,152,1673:1,0,24,27 +chrX 3092654 . T . . END=3093039 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,119,1657 +chrX 3093040 . T C, 805.64 . AS_QUALapprox=|813|0;AS_VarDP=26|29|0;BaseQRankSum=1.351;DP=58;MQRankSum=-0.910;QUALapprox=813;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208009,58;ReadPosRankSum=-0.329;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:26,29,0:55:99:813,0,649,891,736,1627:17,9,14,15 +chrX 3093041 . C . . END=3093680 GT:DP:GQ:MIN_DP:PL 0/0:58:78:58:0,78,1206 +chrX 3093681 . G A, 633.64 . AS_QUALapprox=|641|0;AS_VarDP=19|24|0;BaseQRankSum=-0.800;DP=44;MQRankSum=0.000;QUALapprox=641;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=1.909;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:19,24,0:43:99:641,0,497,697,569,1266:11,8,11,13 +chrX 3093682 . A . . END=3098046 GT:DP:GQ:MIN_DP:PL 0/0:54:56:54:0,56,1175 +chrX 3098047 . A AACAC,AACACAC, 1521.02 . AS_QUALapprox=|1160|1229|0;AS_VarDP=1|15|18|0;BaseQRankSum=-0.442;DP=55;MQRankSum=0.000;QUALapprox=1538;RAW_GT_COUNT=0,0,1;RAW_MQandDP=196000,55;ReadPosRankSum=1.632;VarDP=34 GT:AD:DP:GQ:PL:SB 1/2:1,15,18,0:34:99:1538,466,378,399,0,309,1249,484,417,1177:1,0,13,20 +chrX 3098048 . A . . END=3098088 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,108,1620 +chrX 3098089 . A . . END=3098092 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,1045 +chrX 3098093 . A . . END=3121071 GT:DP:GQ:MIN_DP:PL 0/0:54:28:49:0,28,978 +chrX 3121072 . C T, 1575.06 . AS_QUALapprox=|1589|0;AS_VarDP=0|50|0;DP=51;QUALapprox=1589;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126854,51;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1589,150,0,1589,150,1589:0,0,23,27 +chrX 3121073 . A . . END=3121229 GT:DP:GQ:MIN_DP:PL 0/0:35:24:31:0,24,919 +chrX 3121230 . T TAG, 1200.03 . AS_QUALapprox=|1214|0;AS_VarDP=0|27|0;DP=30;QUALapprox=1214;RAW_GT_COUNT=0,0,1;RAW_MQandDP=47879,30;VarDP=27 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,27,0:27:81:0|1:3121230_T_TAG:1214,81,0,1215,81,1215:3121230:0,0,10,17 +chrX 3121231 . A . . END=3121231 GT:DP:GQ:MIN_DP:PL 0/0:28:78:28:0,78,1170 +chrX 3121232 . C CAG, 1201.03 . AS_QUALapprox=|1215|0;AS_VarDP=0|27|0;DP=28;QUALapprox=1215;RAW_GT_COUNT=0,0,1;RAW_MQandDP=40679,28;VarDP=27 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,27,0:27:81:0|1:3121230_T_TAG:1215,81,0,1215,81,1215:3121230:0,0,10,17 +chrX 3121233 . T . . END=3121367 GT:DP:GQ:MIN_DP:PL 0/0:16:20:13:0,20,358 +chrX 3121368 . A . . END=3121368 GT:DP:GQ:MIN_DP:PL 0/0:11:19:11:0,19,323 +chrX 3121369 . G . . END=3121380 GT:DP:GQ:MIN_DP:PL 0/0:10:21:10:0,21,315 +chrX 3121381 . G . . END=3121391 GT:DP:GQ:MIN_DP:PL 0/0:8:3:8:0,3,45 +chrX 3121392 . GC G, 250.93 . AS_QUALapprox=|265|0;AS_VarDP=0|6|0;DP=9;QUALapprox=265;RAW_GT_COUNT=0,0,1;RAW_MQandDP=23734,9;VarDP=6 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,6,0:6:18:0|1:3121392_GC_G:265,18,0,265,18,265:3121392:0,0,4,2 +chrX 3121394 . T . . END=3121395 GT:DP:GQ:MIN_DP:PL 0/0:6:9:6:0,9,135 +chrX 3121396 . G GA, 285.98 . AS_QUALapprox=|300|0;AS_VarDP=0|7|0;DP=7;QUALapprox=300;RAW_GT_COUNT=0,0,1;RAW_MQandDP=16453,7;VarDP=7 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,7,0:7:21:0|1:3121392_GC_G:300,21,0,300,21,300:3121392:0,0,5,2 +chrX 3121397 . A . . END=3121399 GT:DP:GQ:MIN_DP:PL 0/0:5:6:5:0,6,90 +chrX 3121400 . G A, 233.97 . AS_QUALapprox=|248|0;AS_VarDP=0|6|0;DP=7;QUALapprox=248;RAW_GT_COUNT=0,0,1;RAW_MQandDP=12149,7;VarDP=6 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,6,0:6:18:0|1:3121392_GC_G:248,18,0,248,18,248:3121392:0,0,5,1 +chrX 3121401 . C . . END=3121407 GT:DP:GQ:MIN_DP:PL 0/0:6:0:6:0,0,184 +chrX 3121408 . C . . END=3121420 GT:DP:GQ:MIN_DP:PL 0/0:10:21:9:0,21,315 +chrX 3121421 . A C, 334.06 . AS_QUALapprox=|348|0;AS_VarDP=0|10|0;DP=10;QUALapprox=348;RAW_GT_COUNT=0,0,1;RAW_MQandDP=14674,10;VarDP=10 GT:AD:DP:GQ:PL:SB 1/1:0,10,0:10:30:348,30,0,348,30,348:0,0,9,1 +chrX 3121422 . C . . END=3121439 GT:DP:GQ:MIN_DP:PL 0/0:11:30:11:0,30,338 +chrX 3121440 . T A, 438.06 . AS_QUALapprox=|452|0;AS_VarDP=0|13|0;DP=14;QUALapprox=452;RAW_GT_COUNT=0,0,1;RAW_MQandDP=21172,14;VarDP=13 GT:AD:DP:GQ:PL:SB 1/1:0,13,0:13:39:452,39,0,452,39,452:0,0,11,2 +chrX 3121441 . T . . END=3121495 GT:DP:GQ:MIN_DP:PL 0/0:17:42:17:0,42,477 +chrX 3121496 . G A, 810.06 . AS_QUALapprox=|824|0;AS_VarDP=1|27|0;BaseQRankSum=-0.553;DP=28;MQRankSum=-1.156;QUALapprox=824;RAW_GT_COUNT=0,0,1;RAW_MQandDP=63465,28;ReadPosRankSum=0.991;VarDP=28 GT:AD:DP:GQ:PL:SB 1/1:1,27,0:28:49:824,49,0,827,81,858:1,0,21,6 +chrX 3121497 . A . . END=3121544 GT:DP:GQ:MIN_DP:PL 0/0:36:62:36:0,62,858 +chrX 3121545 . C G, 1877.06 . AS_QUALapprox=|1891|0;AS_VarDP=1|44|0;BaseQRankSum=-0.605;DP=50;MQRankSum=-0.710;QUALapprox=1891;RAW_GT_COUNT=0,0,1;RAW_MQandDP=143405,50;ReadPosRankSum=-1.250;VarDP=45 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:1,44,0:45:90:0|1:3121545_C_G:1891,90,0,1894,132,1936:3121545:1,0,33,11 +chrX 3121546 . G . . END=3121547 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,117,1755 +chrX 3121548 . A G, 1901.06 . AS_QUALapprox=|1915|0;AS_VarDP=1|45|0;BaseQRankSum=-0.577;DP=51;MQRankSum=-0.699;QUALapprox=1915;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147005,51;ReadPosRankSum=-1.356;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:1,45,0:46:93:0|1:3121545_C_G:1915,93,0,1918,135,1960:3121545:1,0,33,12 +chrX 3121549 . G . . END=3121861 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,101,1403 +chrX 3121862 . C T, 2055.06 . AS_QUALapprox=|2069|0;AS_VarDP=0|65|0;DP=69;QUALapprox=2069;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=65 GT:AD:DP:GQ:PL:SB 1/1:0,65,0:65:99:2069,195,0,2069,195,2069:0,0,29,36 +chrX 3121863 . G . . END=3121955 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 3121956 . G A, 1929.06 . AS_QUALapprox=|1943|0;AS_VarDP=0|60|0;DP=62;QUALapprox=1943;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,62;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:1943,180,0,1943,180,1943:0,0,33,27 +chrX 3121957 . T . . END=3122033 GT:DP:GQ:MIN_DP:PL 0/0:45:60:45:0,60,900 +chrX 3122034 . C G, 1080.06 . AS_QUALapprox=|1094|0;AS_VarDP=0|38|0;DP=39;QUALapprox=1094;RAW_GT_COUNT=0,0,1;RAW_MQandDP=117076,39;VarDP=38 GT:AD:DP:GQ:PL:SB 1/1:0,38,0:38:99:1094,113,0,1094,113,1094:0,0,18,20 +chrX 3122035 . C . . END=3122137 GT:DP:GQ:MIN_DP:PL 0/0:28:22:27:0,22,659 +chrX 3122138 . G A, 1620.06 . AS_QUALapprox=|1634|0;AS_VarDP=0|47|0;DP=49;QUALapprox=1634;RAW_GT_COUNT=0,0,1;RAW_MQandDP=125377,49;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1634,141,0,1634,141,1634:0,0,20,27 +chrX 3122139 . G . . END=3122160 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,120,1800 +chrX 3122161 . T G, 1589.06 . AS_QUALapprox=|1603|0;AS_VarDP=0|49|0;DP=50;QUALapprox=1603;RAW_GT_COUNT=0,0,1;RAW_MQandDP=123944,50;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1603,146,0,1603,146,1603:0,0,26,23 +chrX 3122162 . A . . END=3122359 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,117,1554 +chrX 3122360 . A C, 2165.06 . AS_QUALapprox=|2179|0;AS_VarDP=1|68|0;BaseQRankSum=-0.492;DP=71;MQRankSum=-0.980;QUALapprox=2179;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183997,71;ReadPosRankSum=0.678;VarDP=69 GT:AD:DP:GQ:PL:SB 1/1:1,68,0:69:99:2179,173,0,2182,204,2213:1,0,39,29 +chrX 3122361 . T . . END=3122388 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 3122389 . TC T, 2779.03 . AS_QUALapprox=|2793|0;AS_VarDP=1|72|0;BaseQRankSum=-0.474;DP=75;MQRankSum=-0.773;QUALapprox=2793;RAW_GT_COUNT=0,0,1;RAW_MQandDP=215250,75;ReadPosRankSum=-1.068;VarDP=73 GT:AD:DP:GQ:PL:SB 1/1:1,72,0:73:99:2793,180,0,2796,217,2832:1,0,44,28 +chrX 3122391 . T . . END=3122567 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 3122568 . T C, 1931.06 . AS_QUALapprox=|1945|0;AS_VarDP=0|62|0;DP=64;QUALapprox=1945;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133616,64;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:0,62,0:62:99:1945,185,0,1945,185,1945:0,0,27,35 +chrX 3122569 . T . . END=3122658 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 3122659 . T C, 1845.06 . AS_QUALapprox=|1859|0;AS_VarDP=0|59|0;DP=60;QUALapprox=1859;RAW_GT_COUNT=0,0,1;RAW_MQandDP=163819,60;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1859,176,0,1859,176,1859:0,0,25,34 +chrX 3122660 . T . . END=3122904 GT:DP:GQ:MIN_DP:PL 0/0:66:97:66:0,97,1776 +chrX 3122905 . T C, 1803.06 . AS_QUALapprox=|1817|0;AS_VarDP=0|60|0;DP=60;QUALapprox=1817;RAW_GT_COUNT=0,0,1;RAW_MQandDP=110225,60;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:1817,179,0,1817,179,1817:0,0,28,32 +chrX 3122906 . G . . END=3123209 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,103,1409 +chrX 3123210 . A G, 1223.06 . AS_QUALapprox=|1237|0;AS_VarDP=0|41|0;DP=42;QUALapprox=1237;RAW_GT_COUNT=0,0,1;RAW_MQandDP=63769,42;VarDP=41 GT:AD:DP:GQ:PL:SB 1/1:0,41,0:41:99:1237,121,0,1237,121,1237:0,0,24,17 +chrX 3123211 . G . . END=3123423 GT:DP:GQ:MIN_DP:PL 0/0:42:49:42:0,49,1106 +chrX 3123424 . C T, 2071.06 . AS_QUALapprox=|2085|0;AS_VarDP=0|63|0;DP=64;QUALapprox=2085;RAW_GT_COUNT=0,0,1;RAW_MQandDP=121537,64;VarDP=63 GT:AD:DP:GQ:PL:SB 1/1:0,63,0:63:99:2085,189,0,2085,189,2085:0,0,38,25 +chrX 3123425 . G . . END=3123575 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 3123576 . A G, 1708.06 . AS_QUALapprox=|1722|0;AS_VarDP=1|52|0;BaseQRankSum=-0.258;DP=56;MQRankSum=0.000;QUALapprox=1722;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;ReadPosRankSum=0.327;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:1,52,0:53:99:1722,125,0,1725,156,1757:0,1,24,28 +chrX 3123577 . A . . END=3123820 GT:DP:GQ:MIN_DP:PL 0/0:54:86:54:0,86,1240 +chrX 3123821 . C T, 1588.06 . AS_QUALapprox=|1602|0;AS_VarDP=0|49|0;DP=51;QUALapprox=1602;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1602,147,0,1602,147,1602:0,0,25,24 +chrX 3123822 . T . . END=3124075 GT:DP:GQ:MIN_DP:PL 0/0:39:29:35:0,29,893 +chrX 3124076 . CAAAAAA C, 988.99 . AS_QUALapprox=|1003|0;AS_VarDP=3|24|0;BaseQRankSum=-0.711;DP=43;MQRankSum=0.000;QUALapprox=1003;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154800,43;ReadPosRankSum=-0.487;VarDP=27 GT:AD:DP:GQ:PL:SB 1/1:3,24,0:27:23:1003,23,0,1012,73,1062:1,2,14,10 +chrX 3124083 . A . . END=3124187 GT:DP:GQ:MIN_DP:PL 0/0:45:79:45:0,79,1334 +chrX 3124188 . T G, 1765.06 . AS_QUALapprox=|1779|0;AS_VarDP=0|40|0;DP=42;QUALapprox=1779;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151200,42;VarDP=40 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,40,0:40:99:0|1:3124188_T_G:1779,120,0,1779,120,1779:3124188:0,0,21,19 +chrX 3124189 . G . . END=3124195 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,114,1241 +chrX 3124196 . G T, 1763.06 . AS_QUALapprox=|1777|0;AS_VarDP=0|40|0;DP=40;QUALapprox=1777;RAW_GT_COUNT=0,0,1;RAW_MQandDP=144000,40;VarDP=40 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,40,0:40:99:0|1:3124188_T_G:1777,120,0,1777,120,1777:3124188:0,0,21,19 +chrX 3124197 . T . . END=3124510 GT:DP:GQ:MIN_DP:PL 0/0:53:74:53:0,74,1246 +chrX 3124511 . T C, 1802.06 . AS_QUALapprox=|1816|0;AS_VarDP=1|58|0;BaseQRankSum=1.567;DP=60;MQRankSum=0.000;QUALapprox=1816;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;ReadPosRankSum=-1.527;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:1,58,0:59:99:1816,152,0,1819,174,1840:0,1,29,29 +chrX 3124512 . G . . END=3124638 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,103,1474 +chrX 3124639 . T G, 1235.06 . AS_QUALapprox=|1249|0;AS_VarDP=0|39|0;DP=41;QUALapprox=1249;RAW_GT_COUNT=0,0,1;RAW_MQandDP=105855,41;VarDP=39 GT:AD:DP:GQ:PL:SB 1/1:0,39,0:39:99:1249,117,0,1249,117,1249:0,0,19,20 +chrX 3124640 . G . . END=3125172 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,106,1302 +chrX 3125173 . G A, 1718.06 . AS_QUALapprox=|1732|0;AS_VarDP=1|51|0;BaseQRankSum=2.926;DP=55;MQRankSum=0.000;QUALapprox=1732;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;ReadPosRankSum=-1.100;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:1,51,0:52:99:1732,146,0,1734,153,1741:0,1,24,27 +chrX 3125174 . C . . END=3125409 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 3125410 . TC T, 1894.03 . AS_QUALapprox=|1908|0;AS_VarDP=0|51|0;DP=55;QUALapprox=1908;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1908,152,0,1908,152,1908:0,0,29,22 +chrX 3125412 . A . . END=3125573 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,99,1261 +chrX 3125574 . CTT C, 1384.03 . AS_QUALapprox=|1398|0;AS_VarDP=0|37|0;DP=41;QUALapprox=1398;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147600,41;VarDP=37 GT:AD:DP:GQ:PL:SB 1/1:0,37,0:37:99:1398,111,0,1398,111,1398:0,0,16,21 +chrX 3125577 . T . . END=3125657 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,108,1356 +chrX 3125658 . T C, 1809.06 . AS_QUALapprox=|1823|0;AS_VarDP=0|56|0;DP=57;QUALapprox=1823;RAW_GT_COUNT=0,0,1;RAW_MQandDP=204849,57;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1823,167,0,1823,167,1823:0,0,34,22 +chrX 3125659 . G . . END=3125866 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 3125867 . T C, 1755.06 . AS_QUALapprox=|1769|0;AS_VarDP=0|55|0;DP=57;QUALapprox=1769;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1769,164,0,1769,164,1769:0,0,28,27 +chrX 3125868 . T . . END=3126021 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 3126022 . T C, 1751.06 . AS_QUALapprox=|1765|0;AS_VarDP=0|57|0;DP=57;QUALapprox=1765;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1765,170,0,1765,170,1765:0,0,24,33 +chrX 3126023 . G . . END=3126070 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 3126071 . CA C, 1481.03 . AS_QUALapprox=|1495|0;AS_VarDP=1|53|0;BaseQRankSum=1.818;DP=67;MQRankSum=0.000;QUALapprox=1495;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;ReadPosRankSum=1.316;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:1,53,0:54:99:1495,136,0,1498,159,1521:0,1,21,32 +chrX 3126073 . A . . END=3126292 GT:DP:GQ:MIN_DP:PL 0/0:57:97:57:0,97,1538 +chrX 3126293 . C T, 1718.06 . AS_QUALapprox=|1732|0;AS_VarDP=0|52|0;DP=54;QUALapprox=1732;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1732,156,0,1732,156,1732:0,0,23,29 +chrX 3126294 . T . . END=3126900 GT:DP:GQ:MIN_DP:PL 0/0:59:85:59:0,85,1105 +chrX 3126901 . AAAAC A, 686.60 . AS_QUALapprox=|694|0;AS_VarDP=13|18|0;BaseQRankSum=-1.630;DP=39;MQRankSum=0.000;QUALapprox=694;RAW_GT_COUNT=0,1,0;RAW_MQandDP=140400,39;ReadPosRankSum=-0.120;VarDP=31 GT:AD:DP:GQ:PL:SB 0/1:13,18,0:31:99:694,0,491,733,546,1279:7,6,11,7 +chrX 3126906 . A . . END=3126910 GT:DP:GQ:MIN_DP:PL 0/0:40:45:40:0,45,1091 +chrX 3126911 . A . . END=3126911 GT:DP:GQ:MIN_DP:PL 0/0:40:16:40:0,16,1081 +chrX 3126912 . A . . END=3126912 GT:DP:GQ:MIN_DP:PL 0/0:40:36:40:0,36,1152 +chrX 3126913 . A . . END=3126913 GT:DP:GQ:MIN_DP:PL 0/0:40:1:40:0,1,1042 +chrX 3126914 . A . . END=3127479 GT:DP:GQ:MIN_DP:PL 0/0:49:69:49:0,69,1025 +chrX 3127480 . G . . END=3127480 GT:DP:GQ:MIN_DP:PL 0/0:38:5:38:0,5,992 +chrX 3127481 . A . . END=3128308 GT:DP:GQ:MIN_DP:PL 0/0:50:59:50:0,59,1027 +chrX 3128309 . A . . END=3128309 GT:DP:GQ:MIN_DP:PL 0/0:43:10:43:0,10,1136 +chrX 3128310 . C . . END=3137132 GT:DP:GQ:MIN_DP:PL 0/0:36:31:30:0,31,894 +chrX 3137133 . A AT, 846.03 . AS_QUALapprox=|860|0;AS_VarDP=0|34|0;DP=50;QUALapprox=860;RAW_GT_COUNT=0,0,1;RAW_MQandDP=178609,50;VarDP=34 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,34,0:34:99:0|1:3137133_A_AT:860,101,0,860,102,860:3137133:0,0,17,17 +chrX 3137134 . T . . END=3137150 GT:DP:GQ:MIN_DP:PL 0/0:47:78:47:0,78,1170 +chrX 3137151 . G T, 29.64 . AS_QUALapprox=|37|0;AS_VarDP=27|6|0;BaseQRankSum=-3.020;DP=46;MQRankSum=0.550;QUALapprox=37;RAW_GT_COUNT=0,1,0;RAW_MQandDP=164209,46;ReadPosRankSum=2.125;VarDP=33 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,6,0:33:37:0|1:3137133_A_AT:37,0,823,118,841,959:3137133:7,20,6,0 +chrX 3137152 . A . . END=3142245 GT:DP:GQ:MIN_DP:PL 0/0:47:22:39:0,22,995 +chrX 3142246 . C . . END=3142246 GT:DP:GQ:MIN_DP:PL 0/0:48:6:48:0,6,1171 +chrX 3142247 . A . . END=3144795 GT:DP:GQ:MIN_DP:PL 0/0:49:21:35:0,21,791 +chrX 3144796 . G GTC, 290.60 . AS_QUALapprox=|298|0;AS_VarDP=12|11|0;BaseQRankSum=-0.997;DP=30;MQRankSum=0.000;QUALapprox=298;RAW_GT_COUNT=0,1,0;RAW_MQandDP=108000,30;ReadPosRankSum=-2.530;VarDP=23 GT:AD:DP:GQ:PL:SB 0/1:12,11,0:23:99:298,0,344,334,377,711:7,5,4,7 +chrX 3144797 . T . . END=3146339 GT:DP:GQ:MIN_DP:PL 0/0:57:34:39:0,34,937 +chrX 3146340 . C CTCTTCT, 380.60 . AS_QUALapprox=|388|0;AS_VarDP=10|11|0;BaseQRankSum=-1.393;DP=56;MQRankSum=1.591;QUALapprox=388;RAW_GT_COUNT=0,1,0;RAW_MQandDP=197128,56;ReadPosRankSum=-0.741;VarDP=21 GT:AD:DP:GQ:PL:SB 0/1:10,11,0:21:99:388,0,369,420,401,821:7,3,4,7 +chrX 3146341 . T . . END=3146403 GT:DP:GQ:MIN_DP:PL 0/0:53:69:53:0,69,1035 +chrX 3146404 . T TCTC,TCTTCTTCTC, 447.60 . AS_QUALapprox=|455|241|0;AS_VarDP=22|5|0|0;BaseQRankSum=-1.793;DP=54;MQRankSum=-2.002;QUALapprox=455;RAW_GT_COUNT=0,1,0;RAW_MQandDP=185928,54;ReadPosRankSum=1.312;VarDP=27 GT:AD:DP:GQ:PL:SB 0/1:22,5,0,0:27:99:455,0,848,214,758,1190,404,859,1126,1312:8,14,3,2 +chrX 3146405 . C . . END=3155715 GT:DP:GQ:MIN_DP:PL 0/0:58:69:58:0,69,1195 +chrX 3155716 . C . . END=3155716 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,1171 +chrX 3155717 . T . . END=3155717 GT:DP:GQ:MIN_DP:PL 0/0:46:89:46:0,89,1410 +chrX 3155718 . A ATATC, 526.60 . AS_QUALapprox=|534|0;AS_VarDP=9|14|0;BaseQRankSum=-0.676;DP=46;MQRankSum=0.000;QUALapprox=534;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=-0.284;VarDP=23 GT:AD:DP:GQ:PL:SB 0/1:9,14,0:23:99:534,0,322,562,364,926:5,4,8,6 +chrX 3155719 . T . . END=3155789 GT:DP:GQ:MIN_DP:PL 0/0:43:72:43:0,72,1080 +chrX 3155790 . G GTATC, 524.60 . AS_QUALapprox=|532|0;AS_VarDP=14|14|0;BaseQRankSum=0.323;DP=46;MQRankSum=0.000;QUALapprox=532;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=0.069;VarDP=28 GT:AD:DP:GQ:PL:SB 0/1:14,14,0:28:99:532,0,534,575,576,1151:8,6,9,5 +chrX 3155791 . T . . END=3158636 GT:DP:GQ:MIN_DP:PL 0/0:29:28:26:0,28,704 +chrX 3158637 . T . . END=3158637 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,585 +chrX 3158638 . C CA,CAA, 222.60 . AS_QUALapprox=|230|197|0;AS_VarDP=7|6|4|0;BaseQRankSum=-0.444;DP=33;MQRankSum=-0.717;QUALapprox=230;RAW_GT_COUNT=0,1,0;RAW_MQandDP=118009,33;ReadPosRankSum=0.049;VarDP=17 GT:AD:DP:GQ:PL:SB 0/1:7,6,4,0:17:28:230,0,60,33,28,155,185,111,170,292:5,2,4,6 +chrX 3158639 . A . . END=3162172 GT:DP:GQ:MIN_DP:PL 0/0:44:26:36:0,26,1007 +chrX 3162173 . C . . END=3162173 GT:DP:GQ:MIN_DP:PL 0/0:37:13:37:0,13,999 +chrX 3162174 . A . . END=3162186 GT:DP:GQ:MIN_DP:PL 0/0:37:56:37:0,56,996 +chrX 3162187 . T . . END=3162187 GT:DP:GQ:MIN_DP:PL 0/0:35:12:35:0,12,869 +chrX 3162188 . A . . END=3173355 GT:DP:GQ:MIN_DP:PL 0/0:35:43:34:0,43,783 +chrX 3173356 . C . . END=3173356 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,778 +chrX 3173357 . A . . END=3175552 GT:DP:GQ:MIN_DP:PL 0/0:27:32:24:0,32,685 +chrX 3175553 . A . . END=3175553 GT:DP:GQ:MIN_DP:PL 0/0:37:12:37:0,12,937 +chrX 3175554 . G . . END=3179777 GT:DP:GQ:MIN_DP:PL 0/0:56:44:56:0,44,792 +chrX 3179778 . C . . END=3179778 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,777 +chrX 3179779 . A . . END=3179814 GT:DP:GQ:MIN_DP:PL 0/0:38:20:36:0,20,1048 +chrX 3179815 . A . . END=3179815 GT:DP:GQ:MIN_DP:PL 0/0:33:15:33:0,15,938 +chrX 3179816 . G . . END=3189848 GT:DP:GQ:MIN_DP:PL 0/0:50:28:42:0,28,862 +chrX 3189849 . A . . END=3189849 GT:DP:GQ:MIN_DP:PL 0/0:42:13:42:0,13,1092 +chrX 3189850 . T . . END=3189852 GT:DP:GQ:MIN_DP:PL 0/0:42:22:40:0,22,1103 +chrX 3189853 . G . . END=3189853 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,883 +chrX 3189854 . T . . END=3189854 GT:DP:GQ:MIN_DP:PL 0/0:42:90:42:0,90,1350 +chrX 3189855 . G GTA,GTATA,GTATATA, 615.02 . AS_QUALapprox=|404|547|335|0;AS_VarDP=0|5|6|0|0;DP=40;QUALapprox=632;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136681,40;VarDP=11 GT:AD:DP:GQ:PL:SB 1/2:0,5,6,0,0:11:85:632,283,228,126,0,85,297,129,118,334,416,246,119,274,376:0,0,6,5 +chrX 3189856 . T . . END=3189893 GT:DP:GQ:MIN_DP:PL 0/0:39:54:39:0,54,810 +chrX 3189894 . C . . END=3189894 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,869 +chrX 3189895 . A . . END=3189895 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,99,1485 +chrX 3189896 . C . . END=3189896 GT:DP:GQ:MIN_DP:PL 0/0:37:2:37:0,2,948 +chrX 3189897 . A . . END=3189921 GT:DP:GQ:MIN_DP:PL 0/0:38:36:38:0,36,966 +chrX 3189922 . C . . END=3189922 GT:DP:GQ:MIN_DP:PL 0/0:36:9:36:0,9,902 +chrX 3189923 . A . . END=3190709 GT:DP:GQ:MIN_DP:PL 0/0:39:30:38:0,30,963 +chrX 3190710 . A G, 2000.06 . AS_QUALapprox=|2014|0;AS_VarDP=0|61|0;DP=67;QUALapprox=2014;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=61 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:2014,183,0,2014,183,2014:0,0,25,36 +chrX 3190711 . A . . END=3191147 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 3191148 . CAG C, 1539.03 . AS_QUALapprox=|1553|0;AS_VarDP=0|49|0;DP=70;QUALapprox=1553;RAW_GT_COUNT=0,0,1;RAW_MQandDP=249184,70;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1553,148,0,1553,148,1553:0,0,29,20 +chrX 3191151 . A . . END=3195988 GT:DP:GQ:MIN_DP:PL 0/0:43:37:42:0,37,947 +chrX 3195989 . T . . END=3195989 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,908 +chrX 3195990 . G . . END=3198176 GT:DP:GQ:MIN_DP:PL 0/0:57:45:57:0,45,1074 +chrX 3198177 . T . . END=3198177 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,1033 +chrX 3198178 . A . . END=3198178 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,114,1710 +chrX 3198179 . C . . END=3198179 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,830 +chrX 3198180 . A . . END=3205940 GT:DP:GQ:MIN_DP:PL 0/0:56:63:56:0,63,1106 +chrX 3205941 . C G, 796.64 . AS_QUALapprox=|804|0;AS_VarDP=24|29|0;BaseQRankSum=1.941;DP=54;MQRankSum=0.000;QUALapprox=804;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=-0.259;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:24,29,0:53:99:804,0,593,876,679,1556:12,12,21,8 +chrX 3205942 . C . . END=3207230 GT:DP:GQ:MIN_DP:PL 0/0:57:48:57:0,48,1210 +chrX 3207231 . A . . END=3207231 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,1087 +chrX 3207232 . T . . END=3208874 GT:DP:GQ:MIN_DP:PL 0/0:45:37:44:0,37,1230 +chrX 3208875 . T A, 535.64 . AS_QUALapprox=|543|0;AS_VarDP=16|20|0;BaseQRankSum=-0.159;DP=38;MQRankSum=0.000;QUALapprox=543;RAW_GT_COUNT=0,1,0;RAW_MQandDP=136800,38;ReadPosRankSum=1.592;VarDP=36 GT:AD:DP:GQ:PL:SB 0/1:16,20,0:36:99:543,0,414,590,473,1064:9,7,10,10 +chrX 3208876 . T . . END=3209189 GT:DP:GQ:MIN_DP:PL 0/0:59:78:59:0,78,1330 +chrX 3209190 . G A, 957.64 . AS_QUALapprox=|965|0;AS_VarDP=32|35|0;BaseQRankSum=1.997;DP=68;MQRankSum=0.000;QUALapprox=965;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=2.405;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:32,35,0:67:99:965,0,771,1060,876,1936:19,13,19,16 +chrX 3209191 . G . . END=3209280 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 3209281 . T C, 658.64 . AS_QUALapprox=|666|0;AS_VarDP=29|25|0;BaseQRankSum=1.024;DP=54;MQRankSum=0.000;QUALapprox=666;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=0.252;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:29,25,0:54:99:666,0,765,754,840,1594:13,16,14,11 +chrX 3209282 . G . . END=3209386 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 3209387 . A G, 850.64 . AS_QUALapprox=|858|0;AS_VarDP=22|31|0;BaseQRankSum=-1.539;DP=56;MQRankSum=0.000;QUALapprox=858;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=1.111;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:22,31,0:53:99:858,0,595,924,688,1613:8,14,11,20 +chrX 3209388 . G . . END=3209793 GT:DP:GQ:MIN_DP:PL 0/0:44:80:44:0,80,1111 +chrX 3209794 . C T, 538.64 . AS_QUALapprox=|546|0;AS_VarDP=20|20|0;BaseQRankSum=1.856;DP=40;MQRankSum=0.000;QUALapprox=546;RAW_GT_COUNT=0,1,0;RAW_MQandDP=144000,40;ReadPosRankSum=-2.003;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:20,20,0:40:99:546,0,465,605,525,1130:9,11,13,7 +chrX 3209795 . C . . END=3209903 GT:DP:GQ:MIN_DP:PL 0/0:47:97:47:0,97,1359 +chrX 3209904 . CATCT C, 566.60 . AS_QUALapprox=|574|0;AS_VarDP=15|15|0;BaseQRankSum=0.495;DP=43;MQRankSum=0.000;QUALapprox=574;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154800,43;ReadPosRankSum=-0.899;VarDP=30 GT:AD:DP:GQ:PL:SB 0/1:15,15,0:30:99:574,0,571,620,617,1236:5,10,10,5 +chrX 3209909 . A . . END=3209976 GT:DP:GQ:MIN_DP:PL 0/0:39:72:39:0,72,1087 +chrX 3209977 . CATCT C, 837.60 . AS_QUALapprox=|845|0;AS_VarDP=20|22|0;BaseQRankSum=-0.940;DP=46;MQRankSum=0.000;QUALapprox=845;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=1.462;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:20,22,0:42:99:845,0,773,906,840,1745:9,11,13,9 +chrX 3209982 . A . . END=3212034 GT:DP:GQ:MIN_DP:PL 0/0:59:90:59:0,90,1152 +chrX 3212035 . C T, 906.64 . AS_QUALapprox=|914|0;AS_VarDP=37|33|0;BaseQRankSum=1.871;DP=72;MQRankSum=-1.968;QUALapprox=914;RAW_GT_COUNT=0,1,0;RAW_MQandDP=232104,72;ReadPosRankSum=2.071;VarDP=70 GT:AD:DP:GQ:PL:SB 0/1:37,33,0:70:99:914,0,981,1025,1080,2104:15,22,16,17 +chrX 3212036 . T . . END=3212798 GT:DP:GQ:MIN_DP:PL 0/0:52:96:52:0,96,1261 +chrX 3212799 . C T, 996.64 . AS_QUALapprox=|1004|0;AS_VarDP=23|36|0;BaseQRankSum=-1.625;DP=63;MQRankSum=-0.765;QUALapprox=1004;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226336,63;ReadPosRankSum=0.078;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:23,36,0:59:99:1004,0,610,1073,719,1791:13,10,18,18 +chrX 3212800 . T . . END=3213201 GT:DP:GQ:MIN_DP:PL 0/0:57:74:57:0,74,1515 +chrX 3213202 . TTA T, 935.60 . AS_QUALapprox=|943|0;AS_VarDP=18|24|0;BaseQRankSum=2.448;DP=47;MQRankSum=0.000;QUALapprox=943;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=-0.397;VarDP=42 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:18,24,0:42:99:0|1:3213202_TTA_T:943,0,657,997,730,1727:3213202:7,11,12,12 +chrX 3213205 . T . . END=3213213 GT:DP:GQ:MIN_DP:PL 0/0:43:95:43:0,95,1395 +chrX 3213214 . A G, 929.64 . AS_QUALapprox=|937|0;AS_VarDP=20|24|0;BaseQRankSum=1.277;DP=44;MQRankSum=0.000;QUALapprox=937;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=-0.248;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:20,24,0:44:99:0|1:3213202_TTA_T:937,0,720,997,792,1790:3213202:9,11,12,12 +chrX 3213215 . T . . END=3213853 GT:DP:GQ:MIN_DP:PL 0/0:56:82:56:0,82,1430 +chrX 3213854 . T TTTC, 583.60 . AS_QUALapprox=|591|0;AS_VarDP=21|23|0;BaseQRankSum=1.174;DP=51;MQRankSum=0.000;QUALapprox=591;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-0.270;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:21,23,0:44:99:591,0,638,653,706,1359:11,10,13,10 +chrX 3213855 . T . . END=3215106 GT:DP:GQ:MIN_DP:PL 0/0:56:40:56:0,40,1211 +chrX 3215107 . T C, 831.64 . AS_QUALapprox=|839|0;AS_VarDP=27|30|0;BaseQRankSum=-0.326;DP=57;MQRankSum=0.000;QUALapprox=839;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=1.223;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:27,30,0:57:99:839,0,745,920,835,1756:16,11,16,14 +chrX 3215108 . C . . END=3216470 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,113,1549 +chrX 3216471 . G A, 1113.64 . AS_QUALapprox=|1121|0;AS_VarDP=25|41|0;BaseQRankSum=0.145;DP=68;MQRankSum=0.000;QUALapprox=1121;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=-0.582;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:25,41,0:66:99:1121,0,611,1196,734,1930:13,12,17,24 +chrX 3216472 . A . . END=3216690 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,119,1800 +chrX 3216691 . T G, 936.64 . AS_QUALapprox=|944|0;AS_VarDP=20|33|0;BaseQRankSum=0.163;DP=54;MQRankSum=0.000;QUALapprox=944;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=-0.266;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:20,33,0:53:99:944,0,486,1003,585,1588:10,10,13,20 +chrX 3216692 . C . . END=3218112 GT:DP:GQ:MIN_DP:PL 0/0:52:34:43:0,34,1092 +chrX 3218113 . C A, 546.64 . AS_QUALapprox=|554|0;AS_VarDP=33|22|0;BaseQRankSum=0.949;DP=55;MQRankSum=0.000;QUALapprox=554;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=0.052;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:33,22,0:55:99:554,0,857,652,923,1575:12,21,14,8 +chrX 3218114 . A . . END=3218481 GT:DP:GQ:MIN_DP:PL 0/0:52:41:52:0,41,1195 +chrX 3218482 . A AG, 689.60 . AS_QUALapprox=|697|0;AS_VarDP=26|27|0;BaseQRankSum=-0.287;DP=55;MQRankSum=0.000;QUALapprox=697;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-0.730;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:26,27,0:53:99:697,0,724,775,805,1580:12,14,19,8 +chrX 3218483 . G . . END=3218676 GT:DP:GQ:MIN_DP:PL 0/0:31:20:30:0,20,802 +chrX 3218677 . T . . END=3218677 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,649 +chrX 3218678 . A . . END=3218689 GT:DP:GQ:MIN_DP:PL 0/0:33:35:33:0,35,908 +chrX 3218690 . T . . END=3218690 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,823 +chrX 3218691 . A . . END=3218792 GT:DP:GQ:MIN_DP:PL 0/0:48:63:48:0,63,1068 +chrX 3218793 . AAGAT A, 922.60 . AS_QUALapprox=|930|0;AS_VarDP=26|24|0;BaseQRankSum=-2.075;DP=51;MQRankSum=0.000;QUALapprox=930;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-0.300;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:26,24,0:50:99:930,0,999,1008,1071,2079:16,10,16,8 +chrX 3218798 . A . . END=3218856 GT:DP:GQ:MIN_DP:PL 0/0:53:79:53:0,79,1403 +chrX 3218857 . AAAG A, 715.60 . AS_QUALapprox=|723|0;AS_VarDP=25|19|0;BaseQRankSum=0.794;DP=47;MQRankSum=-1.101;QUALapprox=723;RAW_GT_COUNT=0,1,0;RAW_MQandDP=168516,47;ReadPosRankSum=1.441;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,19,0:44:99:0|1:3218857_AAAG_A:723,0,986,798,1044,1842:3218857:18,7,15,4 +chrX 3218861 . A . . END=3218873 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,99,1485 +chrX 3218874 . AGGAAGGGAGGAAG A, 757.60 . AS_QUALapprox=|765|0;AS_VarDP=25|20|0;BaseQRankSum=0.026;DP=45;MQRankSum=-1.073;QUALapprox=765;RAW_GT_COUNT=0,1,0;RAW_MQandDP=161316,45;ReadPosRankSum=-0.541;VarDP=45 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,20,0:45:99:0|1:3218857_AAAG_A:765,0,977,840,1037,1877:3218857:19,6,16,4 +chrX 3218888 . G . . END=3218939 GT:DP:GQ:MIN_DP:PL 0/0:42:67:42:0,67,1065 +chrX 3218940 . C A, 752.64 . AS_QUALapprox=|760|0;AS_VarDP=25|21|0;BaseQRankSum=1.178;DP=48;MQRankSum=0.000;QUALapprox=760;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=-0.466;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,21,0:46:99:0|1:3218940_C_A:760,0,919,835,982,1817:3218940:18,7,11,10 +chrX 3218941 . A . . END=3218957 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,117,1508 +chrX 3218958 . AAG A, 912.60 . AS_QUALapprox=|920|0;AS_VarDP=26|24|0;BaseQRankSum=-0.057;DP=52;MQRankSum=0.000;QUALapprox=920;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=-0.270;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,24,0:50:99:0|1:3218940_C_A:920,0,986,998,1058,2056:3218940:19,7,12,12 +chrX 3218961 . A . . END=3218998 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 3218999 . A G, 1000.64 . AS_QUALapprox=|1008|0;AS_VarDP=25|27|0;BaseQRankSum=-1.605;DP=52;MQRankSum=-0.924;QUALapprox=1008;RAW_GT_COUNT=0,1,0;RAW_MQandDP=184276,52;ReadPosRankSum=-0.403;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,27,0:52:99:0|1:3218999_A_G:1008,0,907,1083,988,2071:3218999:16,9,12,15 +chrX 3219000 . G . . END=3219010 GT:DP:GQ:MIN_DP:PL 0/0:51:97:51:0,97,1352 +chrX 3219011 . AAAGAGAG A, 1131.60 . AS_QUALapprox=|1139|0;AS_VarDP=26|29|0;BaseQRankSum=0.816;DP=55;MQRankSum=-0.910;QUALapprox=1139;RAW_GT_COUNT=0,1,0;RAW_MQandDP=195076,55;ReadPosRankSum=-0.352;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,29,0:55:99:0|1:3218999_A_G:1139,0,973,1218,1061,2278:3218999:17,9,12,17 +chrX 3219019 . A . . END=3219040 GT:DP:GQ:MIN_DP:PL 0/0:50:91:50:0,91,1353 +chrX 3219041 . G GAGAAAGA, 1124.60 . AS_QUALapprox=|1132|0;AS_VarDP=23|29|0;BaseQRankSum=-0.903;DP=58;MQRankSum=-0.852;QUALapprox=1132;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205876,58;ReadPosRankSum=0.784;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:23,29,0:52:99:1132,0,845,1201,932,2133:13,10,10,19 +chrX 3219042 . A . . END=3219503 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,118,1552 +chrX 3219504 . T C, 629.64 . AS_QUALapprox=|637|0;AS_VarDP=24|25|0;BaseQRankSum=-0.221;DP=49;MQRankSum=0.000;QUALapprox=637;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=-0.170;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:24,25,0:49:99:637,0,613,709,687,1396:10,14,13,12 +chrX 3219505 . G . . END=3219649 GT:DP:GQ:MIN_DP:PL 0/0:45:93:45:0,93,1351 +chrX 3219650 . G A, 683.64 . AS_QUALapprox=|691|0;AS_VarDP=22|25|0;BaseQRankSum=1.067;DP=48;MQRankSum=0.000;QUALapprox=691;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=-1.301;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:22,25,0:47:99:691,0,554,756,629,1385:12,10,10,15 +chrX 3219651 . A . . END=3219871 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,107,1544 +chrX 3219872 . T G, 812.64 . AS_QUALapprox=|820|0;AS_VarDP=34|30|0;BaseQRankSum=0.575;DP=64;MQRankSum=0.000;QUALapprox=820;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=0.491;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:34,30,0:64:99:820,0,939,923,1030,1952:18,16,18,12 +chrX 3219873 . C . . END=3220032 GT:DP:GQ:MIN_DP:PL 0/0:74:99:74:0,120,1800 +chrX 3220033 . C G, 845.64 . AS_QUALapprox=|853|0;AS_VarDP=34|34|0;BaseQRankSum=0.586;DP=68;MQRankSum=0.000;QUALapprox=853;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=1.405;VarDP=68 GT:AD:DP:GQ:PL:SB 0/1:34,34,0:68:99:853,0,817,954,919,1874:15,19,19,15 +chrX 3220034 . G . . END=3220155 GT:DP:GQ:MIN_DP:PL 0/0:60:58:53:0,58,1641 +chrX 3220156 . T C, 760.64 . AS_QUALapprox=|768|0;AS_VarDP=20|30|0;BaseQRankSum=-0.610;DP=52;MQRankSum=-0.776;QUALapprox=768;RAW_GT_COUNT=0,1,0;RAW_MQandDP=185200,52;ReadPosRankSum=-0.158;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:20,30,0:50:99:768,0,491,827,580,1408:7,13,13,17 +chrX 3220157 . G . . END=3220173 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,100,1364 +chrX 3220174 . T G, 659.64 . AS_QUALapprox=|667|0;AS_VarDP=18|23|0;BaseQRankSum=1.353;DP=45;MQRankSum=0.000;QUALapprox=667;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=-0.342;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:18,23,0:41:99:667,0,455,720,525,1245:5,13,8,15 +chrX 3220175 . T . . END=3220317 GT:DP:GQ:MIN_DP:PL 0/0:46:92:46:0,92,1344 +chrX 3220318 . C G, 564.64 . AS_QUALapprox=|572|0;AS_VarDP=21|20|0;BaseQRankSum=1.763;DP=41;MQRankSum=0.000;QUALapprox=572;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147600,41;ReadPosRankSum=0.914;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:21,20,0:41:99:572,0,577,635,637,1272:14,7,9,11 +chrX 3220319 . G . . END=3220885 GT:DP:GQ:MIN_DP:PL 0/0:45:42:45:0,42,1086 +chrX 3220886 . G A, 1029.64 . AS_QUALapprox=|1037|0;AS_VarDP=39|28|0;BaseQRankSum=-0.644;DP=68;MQRankSum=0.000;QUALapprox=1037;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=-0.581;VarDP=67 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:39,28,0:67:99:0|1:3220886_G_A:1037,0,1551,1155,1635,2790:3220886:18,21,13,15 +chrX 3220887 . T . . END=3220891 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 3220892 . C T, 1092.64 . AS_QUALapprox=|1100|0;AS_VarDP=39|30|0;BaseQRankSum=1.243;DP=70;MQRankSum=0.000;QUALapprox=1100;RAW_GT_COUNT=0,1,0;RAW_MQandDP=252000,70;ReadPosRankSum=-0.975;VarDP=69 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:39,30,0:69:99:0|1:3220886_G_A:1100,0,1545,1217,1635,2852:3220886:18,21,15,15 +chrX 3220893 . G . . END=3220920 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 3220921 . T G, 779.64 . AS_QUALapprox=|787|0;AS_VarDP=39|32|0;BaseQRankSum=-0.757;DP=73;MQRankSum=0.000;QUALapprox=787;RAW_GT_COUNT=0,1,0;RAW_MQandDP=262800,73;ReadPosRankSum=0.116;VarDP=71 GT:AD:DP:GQ:PL:SB 0/1:39,32,0:71:99:787,0,1056,904,1151,2056:24,15,17,15 +chrX 3220922 . C . . END=3221021 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 3221022 . T C, 757.64 . AS_QUALapprox=|765|0;AS_VarDP=31|28|0;BaseQRankSum=2.276;DP=68;MQRankSum=0.000;QUALapprox=765;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=0.425;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:31,28,0:59:99:765,0,756,857,841,1698:15,16,18,10 +chrX 3221023 . T . . END=3221254 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 3221255 . T . . END=3221256 GT:DP:GQ:MIN_DP:PL 0/0:85:9:85:0,9,2293 +chrX 3221257 . T . . END=3221259 GT:DP:GQ:MIN_DP:PL 0/0:88:21:88:0,21,2402 +chrX 3221260 . G T, 1121.64 . AS_QUALapprox=|1129|0;AS_VarDP=39|41|0;BaseQRankSum=3.279;DP=91;MQRankSum=0.000;QUALapprox=1129;RAW_GT_COUNT=0,1,0;RAW_MQandDP=327600,91;ReadPosRankSum=-0.298;VarDP=80 GT:AD:DP:GQ:PL:SB 0/1:39,41,0:80:99:1129,0,905,1319,1116,2816:25,14,24,17 +chrX 3221261 . A . . END=3221329 GT:DP:GQ:MIN_DP:PL 0/0:81:0:81:0,0,1879 +chrX 3221330 . C T, 843.64 . AS_QUALapprox=|851|0;AS_VarDP=39|33|0;BaseQRankSum=0.676;DP=82;MQRankSum=0.000;QUALapprox=851;RAW_GT_COUNT=0,1,0;RAW_MQandDP=295200,82;ReadPosRankSum=-0.006;VarDP=72 GT:AD:DP:GQ:PL:SB 0/1:39,33,0:72:99:851,0,1004,1038,1188,2593:22,17,17,16 +chrX 3221331 . T . . END=3221408 GT:DP:GQ:MIN_DP:PL 0/0:72:0:72:0,0,1533 +chrX 3221409 . A AT, 800.60 . AS_QUALapprox=|808|0;AS_VarDP=20|31|0;BaseQRankSum=-0.475;DP=67;MQRankSum=0.000;QUALapprox=808;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=-1.032;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:20,31,0:51:99:808,0,469,957,633,1968:2,18,13,18 +chrX 3221410 . T . . END=3221416 GT:DP:GQ:MIN_DP:PL 0/0:62:0:62:0,0,1354 +chrX 3221417 . T . . END=3221912 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,107,1441 +chrX 3221913 . T C, 382.64 . AS_QUALapprox=|390|0;AS_VarDP=29|16|0;BaseQRankSum=-0.020;DP=49;MQRankSum=0.000;QUALapprox=390;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=0.095;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:29,16,0:45:99:390,0,834,477,881,1358:15,14,4,12 +chrX 3221914 . A . . END=3222440 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,110,1564 +chrX 3222441 . T C, 990.64 . AS_QUALapprox=|998|0;AS_VarDP=33|38|0;BaseQRankSum=-0.066;DP=75;MQRankSum=0.000;QUALapprox=998;RAW_GT_COUNT=0,1,0;RAW_MQandDP=270000,75;ReadPosRankSum=1.920;VarDP=71 GT:AD:DP:GQ:PL:SB 0/1:33,38,0:71:99:998,0,829,1096,943,2039:18,15,22,16 +chrX 3222442 . G . . END=3222871 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,102,1445 +chrX 3222872 . A G, 761.64 . AS_QUALapprox=|769|0;AS_VarDP=39|32|0;BaseQRankSum=-1.947;DP=73;MQRankSum=0.000;QUALapprox=769;RAW_GT_COUNT=0,1,0;RAW_MQandDP=262800,73;ReadPosRankSum=1.538;VarDP=71 GT:AD:DP:GQ:PL:SB 0/1:39,32,0:71:99:769,0,1093,886,1188,2074:24,15,17,15 +chrX 3222873 . T . . END=3223331 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 3223332 . T C, 473.64 . AS_QUALapprox=|481|0;AS_VarDP=33|20|0;BaseQRankSum=0.026;DP=56;MQRankSum=0.000;QUALapprox=481;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-1.111;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:33,20,0:53:99:481,0,918,580,978,1558:13,20,8,12 +chrX 3223333 . G . . END=3223506 GT:DP:GQ:MIN_DP:PL 0/0:63:78:63:0,78,1747 +chrX 3223507 . T TAAAA, 1412.60 . AS_QUALapprox=|1420|0;AS_VarDP=21|36|0;BaseQRankSum=0.413;DP=61;MQRankSum=0.000;QUALapprox=1420;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-0.894;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:21,36,0:57:99:1420,0,774,1483,882,2365:7,14,20,16 +chrX 3223508 . A . . END=3223542 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 3223543 . T C, 915.64 . AS_QUALapprox=|923|0;AS_VarDP=24|34|0;BaseQRankSum=0.742;DP=59;MQRankSum=0.000;QUALapprox=923;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=0.237;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:24,34,0:58:99:923,0,575,995,677,1672:10,14,23,11 +chrX 3223544 . G . . END=3223631 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,111,1538 +chrX 3223632 . GA G, 567.60 . AS_QUALapprox=|575|0;AS_VarDP=17|27|0;BaseQRankSum=0.066;DP=59;MQRankSum=0.000;QUALapprox=575;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=1.294;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:17,27,0:44:99:575,0,291,625,372,998:7,10,14,13 +chrX 3223634 . A . . END=3223757 GT:DP:GQ:MIN_DP:PL 0/0:52:69:52:0,69,1174 +chrX 3223758 . C G, 695.64 . AS_QUALapprox=|703|0;AS_VarDP=16|25|0;BaseQRankSum=0.720;DP=42;MQRankSum=-0.750;QUALapprox=703;RAW_GT_COUNT=0,1,0;RAW_MQandDP=149200,42;ReadPosRankSum=-2.126;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:16,25,0:41:99:703,0,393,751,468,1219:11,5,10,15 +chrX 3223759 . G . . END=3223905 GT:DP:GQ:MIN_DP:PL 0/0:44:51:44:0,51,1211 +chrX 3223906 . C T, 785.64 . AS_QUALapprox=|793|0;AS_VarDP=15|21|0;BaseQRankSum=1.003;DP=36;MQRankSum=-0.268;QUALapprox=793;RAW_GT_COUNT=0,1,0;RAW_MQandDP=124004,36;ReadPosRankSum=-1.334;VarDP=36 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:15,21,0:36:99:0|1:3223906_C_T:793,0,567,839,630,1468:3223906:9,6,15,6 +chrX 3223907 . G . . END=3223909 GT:DP:GQ:MIN_DP:PL 0/0:34:84:34:0,84,1260 +chrX 3223910 . T C, 751.64 . AS_QUALapprox=|759|0;AS_VarDP=16|20|0;BaseQRankSum=0.121;DP=36;MQRankSum=0.160;QUALapprox=759;RAW_GT_COUNT=0,1,0;RAW_MQandDP=124900,36;ReadPosRankSum=-0.724;VarDP=36 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:16,20,0:36:99:0|1:3223906_C_T:759,0,601,807,662,1469:3223906:10,6,15,5 +chrX 3223911 . G . . END=3223918 GT:DP:GQ:MIN_DP:PL 0/0:32:81:32:0,81,1013 +chrX 3223919 . A G, 604.64 . AS_QUALapprox=|612|0;AS_VarDP=16|16|0;BaseQRankSum=-0.968;DP=33;MQRankSum=-0.033;QUALapprox=612;RAW_GT_COUNT=0,1,0;RAW_MQandDP=110100,33;ReadPosRankSum=0.455;VarDP=32 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:16,16,0:32:99:0|1:3223906_C_T:612,0,603,660,651,1312:3223906:10,6,11,5 +chrX 3223920 . A . . END=3223930 GT:DP:GQ:MIN_DP:PL 0/0:31:68:31:0,68,978 +chrX 3223931 . C CA, 162.60 . AS_QUALapprox=|170|0;AS_VarDP=11|14|0;BaseQRankSum=0.871;DP=48;MQRankSum=1.417;QUALapprox=170;RAW_GT_COUNT=0,1,0;RAW_MQandDP=160100,48;ReadPosRankSum=-1.849;VarDP=25 GT:AD:DP:GQ:PL:SB 0/1:11,14,0:25:99:170,0,147,203,187,390:7,4,6,8 +chrX 3223932 . A . . END=3223962 GT:DP:GQ:MIN_DP:PL 0/0:47:88:47:0,88,1285 +chrX 3223963 . T C, 667.64 . AS_QUALapprox=|675|0;AS_VarDP=21|24|0;BaseQRankSum=1.830;DP=46;MQRankSum=-0.447;QUALapprox=675;RAW_GT_COUNT=0,1,0;RAW_MQandDP=159600,46;ReadPosRankSum=-1.126;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:21,24,0:45:99:675,0,515,737,587,1324:10,11,9,15 +chrX 3223964 . T . . END=3224200 GT:DP:GQ:MIN_DP:PL 0/0:54:61:54:0,61,1349 +chrX 3224201 . A AT, 605.60 . AS_QUALapprox=|613|0;AS_VarDP=24|28|0;BaseQRankSum=0.191;DP=57;MQRankSum=0.000;QUALapprox=613;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-0.459;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:24,28,0:52:99:613,0,522,686,606,1292:15,9,15,13 +chrX 3224202 . T . . END=3224333 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 3224334 . T C, 795.64 . AS_QUALapprox=|803|0;AS_VarDP=30|31|0;BaseQRankSum=-0.111;DP=63;MQRankSum=0.000;QUALapprox=803;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=-1.725;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:30,31,0:61:99:803,0,765,893,858,1751:15,15,15,16 +chrX 3224335 . G . . END=3224450 GT:DP:GQ:MIN_DP:PL 0/0:51:91:51:0,91,1481 +chrX 3224451 . T TA, 818.60 . AS_QUALapprox=|826|0;AS_VarDP=21|26|0;BaseQRankSum=0.000;DP=50;MQRankSum=0.000;QUALapprox=826;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=0.664;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:21,26,0:47:99:826,0,627,889,705,1595:7,14,8,18 +chrX 3224452 . A . . END=3224692 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,119,1673 +chrX 3224693 . G A, 679.64 . AS_QUALapprox=|687|0;AS_VarDP=29|25|0;BaseQRankSum=1.311;DP=58;MQRankSum=0.000;QUALapprox=687;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-0.312;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:29,25,0:54:99:687,0,786,774,861,1635:18,11,16,9 +chrX 3224694 . T . . END=3225047 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,119,1707 +chrX 3225048 . T G, 674.64 . AS_QUALapprox=|682|0;AS_VarDP=25|27|0;BaseQRankSum=-0.954;DP=53;MQRankSum=0.000;QUALapprox=682;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=0.302;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:25,27,0:52:99:682,0,674,757,754,1511:13,12,13,14 +chrX 3225049 . G . . END=3225061 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 3225062 . A G, 662.64 . AS_QUALapprox=|670|0;AS_VarDP=24|27|0;BaseQRankSum=-1.642;DP=53;MQRankSum=0.000;QUALapprox=670;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=0.208;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:24,27,0:51:99:670,0,640,742,721,1463:11,13,13,14 +chrX 3225063 . G . . END=3225145 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,120,1800 +chrX 3225146 . C T, 795.64 . AS_QUALapprox=|803|0;AS_VarDP=16|29|0;BaseQRankSum=-0.907;DP=47;MQRankSum=0.000;QUALapprox=803;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=0.297;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:16,29,0:45:99:803,0,401,851,488,1339:9,7,15,14 +chrX 3225147 . T . . END=3225969 GT:DP:GQ:MIN_DP:PL 0/0:55:68:55:0,68,1335 +chrX 3225970 . T C, 1077.64 . AS_QUALapprox=|1085|0;AS_VarDP=35|40|0;BaseQRankSum=0.650;DP=76;MQRankSum=0.000;QUALapprox=1085;RAW_GT_COUNT=0,1,0;RAW_MQandDP=273600,76;ReadPosRankSum=2.634;VarDP=75 GT:AD:DP:GQ:PL:SB 0/1:35,40,0:75:99:1085,0,885,1190,1005,2195:19,16,19,21 +chrX 3225971 . A . . END=3226767 GT:DP:GQ:MIN_DP:PL 0/0:62:90:62:0,90,1469 +chrX 3226768 . C A, 1922.06 . AS_QUALapprox=|1936|0;AS_VarDP=0|58|0;DP=61;QUALapprox=1936;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=58 GT:AD:DP:GQ:PL:SB 1/1:0,58,0:58:99:1936,174,0,1936,174,1936:0,0,32,26 +chrX 3226769 . T . . END=3227523 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,113,1637 +chrX 3227524 . A G, 1780.06 . AS_QUALapprox=|1794|0;AS_VarDP=0|56|0;DP=60;QUALapprox=1794;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1794,168,0,1794,168,1794:0,0,28,28 +chrX 3227525 . G . . END=3227654 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 3227655 . A G, 2200.06 . AS_QUALapprox=|2214|0;AS_VarDP=0|66|0;DP=66;QUALapprox=2214;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=66 GT:AD:DP:GQ:PL:SB 1/1:0,66,0:66:99:2214,198,0,2214,198,2214:0,0,35,31 +chrX 3227656 . G . . END=3227782 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 3227783 . T C, 2004.06 . AS_QUALapprox=|2018|0;AS_VarDP=0|64|0;DP=66;QUALapprox=2018;RAW_GT_COUNT=0,0,1;RAW_MQandDP=236906,66;VarDP=64 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:2018,191,0,2018,191,2018:0,0,31,33 +chrX 3227784 . A . . END=3228075 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,110,1592 +chrX 3228076 . A G, 2527.06 . AS_QUALapprox=|2541|0;AS_VarDP=0|79|0;DP=79;QUALapprox=2541;RAW_GT_COUNT=0,0,1;RAW_MQandDP=284400,79;VarDP=79 GT:AD:DP:GQ:PL:SB 1/1:0,79,0:79:99:2541,237,0,2541,237,2541:0,0,37,42 +chrX 3228077 . T . . END=3228169 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 3228170 . CT C, 418.60 . AS_QUALapprox=|426|0;AS_VarDP=7|22|0;BaseQRankSum=1.955;DP=52;MQRankSum=-0.483;QUALapprox=426;RAW_GT_COUNT=0,1,0;RAW_MQandDP=185002,52;ReadPosRankSum=-0.168;VarDP=29 GT:AD:DP:GQ:PL:SB 0/1:7,22,0:29:25:426,0,25,446,90,535:6,1,8,14 +chrX 3228172 . T . . END=3230046 GT:DP:GQ:MIN_DP:PL 0/0:47:52:36:0,52,1015 +chrX 3230047 . G A, 2123.06 . AS_QUALapprox=|2137|0;AS_VarDP=0|65|0;DP=65;QUALapprox=2137;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=65 GT:AD:DP:GQ:PL:SB 1/1:0,65,0:65:99:2137,195,0,2137,195,2137:0,0,32,33 +chrX 3230048 . G . . END=3231006 GT:DP:GQ:MIN_DP:PL 0/0:53:69:53:0,69,1286 +chrX 3231007 . C T, 1774.06 . AS_QUALapprox=|1788|0;AS_VarDP=0|54|0;DP=55;QUALapprox=1788;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:1788,162,0,1788,162,1788:0,0,26,28 +chrX 3231008 . C . . END=3231316 GT:DP:GQ:MIN_DP:PL 0/0:56:84:56:0,84,1488 +chrX 3231317 . C T, 1532.06 . AS_QUALapprox=|1546|0;AS_VarDP=1|47|0;BaseQRankSum=-0.273;DP=51;MQRankSum=0.000;QUALapprox=1546;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;ReadPosRankSum=-1.047;VarDP=48 GT:AD:DP:GQ:PL:SB 1/1:1,47,0:48:99:1546,110,0,1549,141,1581:0,1,21,26 +chrX 3231318 . T . . END=3232029 GT:DP:GQ:MIN_DP:PL 0/0:54:94:54:0,94,1484 +chrX 3232030 . T C, 1746.06 . AS_QUALapprox=|1760|0;AS_VarDP=0|55|0;DP=57;QUALapprox=1760;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1760,164,0,1760,164,1760:0,0,34,21 +chrX 3232031 . C . . END=3232573 GT:DP:GQ:MIN_DP:PL 0/0:61:89:61:0,89,1364 +chrX 3232574 . A AT,ATT, 980.03 . AS_QUALapprox=|994|153|0;AS_VarDP=0|40|4|0;DP=58;QUALapprox=994;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=44 GT:AD:DP:GQ:PL:SB 1/1:0,40,4,0:44:51:994,133,0,858,51,841,970,130,857,958:0,0,23,21 +chrX 3232575 . T . . END=3232590 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 3232591 . A . . END=3232591 GT:DP:GQ:MIN_DP:PL 0/0:56:0:56:0,0,1349 +chrX 3232592 . A . . END=3232707 GT:DP:GQ:MIN_DP:PL 0/0:51:68:51:0,68,1311 +chrX 3232708 . A G, 2171.06 . AS_QUALapprox=|2185|0;AS_VarDP=0|49|0;DP=49;QUALapprox=2185;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,49,0:49:99:0|1:3232708_A_G:2185,147,0,2185,147,2185:3232708:0,0,24,25 +chrX 3232709 . T . . END=3232714 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 3232715 . G T, 2351.06 . AS_QUALapprox=|2365|0;AS_VarDP=0|53|0;DP=53;QUALapprox=2365;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,53,0:53:99:0|1:3232708_A_G:2365,160,0,2365,160,2365:3232708:0,0,26,27 +chrX 3232716 . T . . END=3232739 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 3232740 . A C, 2363.06 . AS_QUALapprox=|2377|0;AS_VarDP=0|56|0;DP=60;QUALapprox=2377;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,56,0:56:99:0|1:3232708_A_G:2377,169,0,2377,169,2377:3232708:0,0,27,29 +chrX 3232741 . G . . END=3233044 GT:DP:GQ:MIN_DP:PL 0/0:64:81:64:0,81,1509 +chrX 3233045 . C T, 1788.06 . AS_QUALapprox=|1802|0;AS_VarDP=0|54|0;DP=55;QUALapprox=1802;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:1802,162,0,1802,162,1802:0,0,26,28 +chrX 3233046 . A . . END=3233672 GT:DP:GQ:MIN_DP:PL 0/0:59:84:59:0,84,1097 +chrX 3233673 . C T, 1445.06 . AS_QUALapprox=|1459|0;AS_VarDP=0|44|0;DP=45;QUALapprox=1459;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162000,45;VarDP=44 GT:AD:DP:GQ:PL:SB 1/1:0,44,0:44:99:1459,132,0,1459,132,1459:0,0,19,25 +chrX 3233674 . A . . END=3233774 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,112,1523 +chrX 3233775 . G A, 1711.06 . AS_QUALapprox=|1725|0;AS_VarDP=1|55|0;BaseQRankSum=2.160;DP=56;MQRankSum=0.000;QUALapprox=1725;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;ReadPosRankSum=-0.681;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:1,55,0:56:99:1725,158,0,1728,165,1735:0,1,25,30 +chrX 3233776 . C . . END=3233848 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 3233849 . G A, 1517.06 . AS_QUALapprox=|1531|0;AS_VarDP=1|46|0;BaseQRankSum=3.169;DP=50;MQRankSum=0.000;QUALapprox=1531;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;ReadPosRankSum=1.549;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:1,46,0:47:99:1531,131,0,1533,138,1540:0,1,25,21 +chrX 3233850 . G . . END=3235040 GT:DP:GQ:MIN_DP:PL 0/0:59:88:59:0,88,1306 +chrX 3235041 . G A, 1912.06 . AS_QUALapprox=|1926|0;AS_VarDP=0|57|0;DP=59;QUALapprox=1926;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1926,171,0,1926,171,1926:0,0,27,30 +chrX 3235042 . T . . END=3235167 GT:DP:GQ:MIN_DP:PL 0/0:58:94:58:0,94,1626 +chrX 3235168 . T G, 1554.06 . AS_QUALapprox=|1568|0;AS_VarDP=0|48|0;DP=48;QUALapprox=1568;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=48 GT:AD:DP:GQ:PL:SB 1/1:0,48,0:48:99:1568,143,0,1568,143,1568:0,0,28,20 +chrX 3235169 . T . . END=3235432 GT:DP:GQ:MIN_DP:PL 0/0:54:60:54:0,60,1309 +chrX 3235433 . T C, 1790.06 . AS_QUALapprox=|1804|0;AS_VarDP=0|56|0;DP=58;QUALapprox=1804;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1804,167,0,1804,167,1804:0,0,28,28 +chrX 3235434 . T . . END=3235679 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,118,1781 +chrX 3235680 . A T, 1793.06 . AS_QUALapprox=|1807|0;AS_VarDP=0|56|0;DP=60;QUALapprox=1807;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1807,168,0,1807,168,1807:0,0,26,30 +chrX 3235681 . A . . END=3236215 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,100,1414 +chrX 3236216 . A G, 1823.06 . AS_QUALapprox=|1837|0;AS_VarDP=0|55|0;DP=56;QUALapprox=1837;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1837,165,0,1837,165,1837:0,0,32,23 +chrX 3236217 . C . . END=3236710 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,112,1573 +chrX 3236711 . CT C, 2934.03 . AS_QUALapprox=|2948|0;AS_VarDP=0|79|0;DP=80;QUALapprox=2948;RAW_GT_COUNT=0,0,1;RAW_MQandDP=288000,80;VarDP=79 GT:AD:DP:GQ:PL:SB 1/1:0,79,0:79:99:2948,238,0,2948,238,2948:0,0,39,40 +chrX 3236713 . T . . END=3237099 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 3237100 . T G, 1837.06 . AS_QUALapprox=|1851|0;AS_VarDP=0|57|0;DP=59;QUALapprox=1851;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1851,170,0,1851,170,1851:0,0,27,30 +chrX 3237101 . T . . END=3237946 GT:DP:GQ:MIN_DP:PL 0/0:56:85:56:0,85,1116 +chrX 3237947 . C A, 1222.06 . AS_QUALapprox=|1236|0;AS_VarDP=0|37|0;DP=37;QUALapprox=1236;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133200,37;VarDP=37 GT:AD:DP:GQ:PL:SB 1/1:0,37,0:37:99:1236,111,0,1236,111,1236:0,0,15,22 +chrX 3237948 . G . . END=3238045 GT:DP:GQ:MIN_DP:PL 0/0:38:63:38:0,63,1033 +chrX 3238046 . C T, 1427.06 . AS_QUALapprox=|1441|0;AS_VarDP=0|44|0;DP=46;QUALapprox=1441;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;VarDP=44 GT:AD:DP:GQ:PL:SB 1/1:0,44,0:44:99:1441,132,0,1441,132,1441:0,0,24,20 +chrX 3238047 . T . . END=3240081 GT:DP:GQ:MIN_DP:PL 0/0:61:84:61:0,84,1423 +chrX 3240082 . T A, 1960.06 . AS_QUALapprox=|1974|0;AS_VarDP=0|63|0;DP=66;QUALapprox=1974;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=63 GT:AD:DP:GQ:PL:SB 1/1:0,63,0:63:99:1974,189,0,1974,189,1974:0,0,31,32 +chrX 3240083 . G . . END=3240361 GT:DP:GQ:MIN_DP:PL 0/0:52:80:52:0,80,1309 +chrX 3240362 . T C, 1650.06 . AS_QUALapprox=|1664|0;AS_VarDP=0|50|0;DP=50;QUALapprox=1664;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1664,150,0,1664,150,1664:0,0,25,25 +chrX 3240363 . C . . END=3240535 GT:DP:GQ:MIN_DP:PL 0/0:52:57:52:0,57,981 +chrX 3240536 . G . . END=3240536 GT:DP:GQ:MIN_DP:PL 0/0:34:3:34:0,3,813 +chrX 3240537 . T . . END=3240573 GT:DP:GQ:MIN_DP:PL 0/0:39:81:39:0,81,1146 +chrX 3240574 . TTTCCTTCC T, 603.60 . AS_QUALapprox=|611|0;AS_VarDP=15|18|0;BaseQRankSum=-0.630;DP=44;MQRankSum=1.156;QUALapprox=611;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154625,44;ReadPosRankSum=-0.445;VarDP=33 GT:AD:DP:GQ:PL:SB 0/1:15,18,0:33:99:611,0,541,656,596,1252:2,13,5,13 +chrX 3240583 . T . . END=3240679 GT:DP:GQ:MIN_DP:PL 0/0:40:35:39:0,35,928 +chrX 3240680 . CTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTCTT C,CTCTT, 390.60 . AS_QUALapprox=|146|398|0;AS_VarDP=16|0|7|0;BaseQRankSum=-1.152;DP=45;MQRankSum=1.255;QUALapprox=398;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154105,45;ReadPosRankSum=0.238;VarDP=23 GT:AD:DP:GQ:PL:SB 0/2:16,0,7,0:23:99:398,252,935,0,651,627,360,935,664,1022:6,10,1,6 +chrX 3240690 . CTTTCTTTCTTTCTTTCT *,C, 450 . AS_QUALapprox=|0|776|0;AS_VarDP=0|11|13|0;DP=42;QUALapprox=1184;RAW_GT_COUNT=0,0,1;RAW_MQandDP=143305,42;VarDP=24 GT:AD:DP:GQ:PL:SB 1/2:0,11,13,0:24:99:1184,486,447,470,0,408,1076,498,468,1057:0,0,9,15 +chrX 3240714 . T . . END=3240752 GT:DP:GQ:MIN_DP:PL 0/0:33:45:33:0,45,675 +chrX 3240753 . T C, 738.06 . AS_QUALapprox=|752|0;AS_VarDP=0|20|0;DP=40;QUALapprox=752;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136105,40;VarDP=20 GT:AD:DP:GQ:PL:SB 1/1:0,20,0:20:62:752,62,0,752,63,752:0,0,6,14 +chrX 3240754 . T . . END=3240758 GT:DP:GQ:MIN_DP:PL 0/0:39:65:39:0,65,1080 +chrX 3240759 . C T,CTCTT, 1341.06 . AS_QUALapprox=|1355|512|0;AS_VarDP=0|20|0|0;DP=40;QUALapprox=1355;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136105,40;VarDP=20 GT:AD:DP:GQ:PL:SB 1/1:0,20,0,0:20:81:1355,102,0,843,81,1125,1137,119,1022,1240:0,0,6,14 +chrX 3240760 . T . . END=3240949 GT:DP:GQ:MIN_DP:PL 0/0:41:35:40:0,35,1070 +chrX 3240950 . G GA, 2409.03 . AS_QUALapprox=|2423|0;AS_VarDP=0|60|0;DP=62;QUALapprox=2423;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219005,62;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:2423,181,0,2423,181,2423:0,0,27,33 +chrX 3240951 . T . . END=3241639 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,103,1627 +chrX 3241640 . T A, 1763.06 . AS_QUALapprox=|1777|0;AS_VarDP=0|54|0;DP=55;QUALapprox=1777;RAW_GT_COUNT=0,0,1;RAW_MQandDP=196516,55;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:1777,162,0,1777,162,1777:0,0,30,24 +chrX 3241641 . G . . END=3242208 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,103,1364 +chrX 3242209 . T C, 1805.06 . AS_QUALapprox=|1819|0;AS_VarDP=0|57|0;DP=59;QUALapprox=1819;RAW_GT_COUNT=0,0,1;RAW_MQandDP=209824,59;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1819,170,0,1819,170,1819:0,0,33,24 +chrX 3242210 . G . . END=3242356 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 3242357 . C G, 2613.06 . AS_QUALapprox=|2627|0;AS_VarDP=0|60|0;DP=61;QUALapprox=2627;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,60,0:60:99:0|1:3242357_C_G:2627,181,0,2627,181,2627:3242357:0,0,23,37 +chrX 3242358 . T . . END=3242369 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 3242370 . C T, 2672.06 . AS_QUALapprox=|2686|0;AS_VarDP=0|62|0;DP=64;QUALapprox=2686;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=62 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,62,0:62:99:0|1:3242357_C_G:2686,187,0,2686,187,2686:3242357:0,0,25,37 +chrX 3242371 . A . . END=3242496 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,117,1755 +chrX 3242497 . C A, 1629.06 . AS_QUALapprox=|1643|0;AS_VarDP=0|50|0;DP=50;QUALapprox=1643;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1643,150,0,1643,150,1643:0,0,22,28 +chrX 3242498 . T . . END=3242755 GT:DP:GQ:MIN_DP:PL 0/0:51:92:51:0,92,1468 +chrX 3242756 . C A, 1832.06 . AS_QUALapprox=|1846|0;AS_VarDP=0|55|0;DP=55;QUALapprox=1846;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1846,165,0,1846,165,1846:0,0,24,31 +chrX 3242757 . G . . END=3242943 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,109,1543 +chrX 3242944 . A C, 2155.06 . AS_QUALapprox=|2169|0;AS_VarDP=0|66|0;DP=66;QUALapprox=2169;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=66 GT:AD:DP:GQ:PL:SB 1/1:0,66,0:66:99:2169,198,0,2169,198,2169:0,0,35,31 +chrX 3242945 . T . . END=3242986 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 3242987 . T C, 2044.06 . AS_QUALapprox=|2058|0;AS_VarDP=0|67|0;DP=67;QUALapprox=2058;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=67 GT:AD:DP:GQ:PL:SB 1/1:0,67,0:67:99:2058,200,0,2058,200,2058:0,0,32,35 +chrX 3242988 . A . . END=3243079 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 3243080 . A G, 1462.06 . AS_QUALapprox=|1476|0;AS_VarDP=0|46|0;DP=46;QUALapprox=1476;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1476,137,0,1476,137,1476:0,0,19,27 +chrX 3243081 . A . . END=3243351 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,101,1415 +chrX 3243352 . C T, 1453.06 . AS_QUALapprox=|1467|0;AS_VarDP=0|44|0;DP=45;QUALapprox=1467;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162000,45;VarDP=44 GT:AD:DP:GQ:PL:SB 1/1:0,44,0:44:99:1467,132,0,1467,132,1467:0,0,24,20 +chrX 3243353 . T . . END=3243635 GT:DP:GQ:MIN_DP:PL 0/0:28:20:28:0,20,674 +chrX 3243636 . A AGAAG, 982.03 . AS_QUALapprox=|996|0;AS_VarDP=0|24|0;DP=28;QUALapprox=996;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=24 GT:AD:DP:GQ:PL:SB 1/1:0,24,0:24:72:996,72,0,996,72,996:0,0,15,9 +chrX 3243637 . G . . END=3243724 GT:DP:GQ:MIN_DP:PL 0/0:36:53:36:0,53,779 +chrX 3243725 . GGAGGA G, 1291.03 . AS_QUALapprox=|1305|0;AS_VarDP=0|30|0;DP=38;QUALapprox=1305;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;VarDP=30 GT:AD:DP:GQ:PL:SB 1/1:0,30,0:30:90:1305,90,0,1305,90,1305:0,0,20,10 +chrX 3243731 . G . . END=3243846 GT:DP:GQ:MIN_DP:PL 0/0:32:26:31:0,26,828 +chrX 3243847 . T . . END=3243847 GT:DP:GQ:MIN_DP:PL 0/0:27:6:27:0,6,608 +chrX 3243848 . A . . END=3244341 GT:DP:GQ:MIN_DP:PL 0/0:33:33:29:0,33,668 +chrX 3244342 . T . . END=3244342 GT:DP:GQ:MIN_DP:PL 0/0:47:7:47:0,7,1114 +chrX 3244343 . C . . END=3244426 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,115,1406 +chrX 3244427 . T C, 1558.06 . AS_QUALapprox=|1572|0;AS_VarDP=0|49|0;DP=51;QUALapprox=1572;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1572,146,0,1572,146,1572:0,0,25,24 +chrX 3244428 . G . . END=3245310 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,113,1359 +chrX 3245311 . C T, 2085.06 . AS_QUALapprox=|2099|0;AS_VarDP=0|64|0;DP=64;QUALapprox=2099;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=64 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:2099,192,0,2099,192,2099:0,0,28,36 +chrX 3245312 . T . . END=3247026 GT:DP:GQ:MIN_DP:PL 0/0:55:82:55:0,82,1101 +chrX 3247027 . T C, 1723.06 . AS_QUALapprox=|1737|0;AS_VarDP=0|53|0;DP=54;QUALapprox=1737;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1737,159,0,1737,159,1737:0,0,26,27 +chrX 3247028 . A . . END=3249060 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,100,1400 +chrX 3249061 . T C, 1350.06 . AS_QUALapprox=|1364|0;AS_VarDP=1|44|0;BaseQRankSum=-0.479;DP=47;MQRankSum=0.000;QUALapprox=1364;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;ReadPosRankSum=0.616;VarDP=45 GT:AD:DP:GQ:PL:SB 1/1:1,44,0:45:99:1364,100,0,1367,131,1399:1,0,23,21 +chrX 3249062 . G . . END=3249967 GT:DP:GQ:MIN_DP:PL 0/0:48:90:48:0,90,1191 +chrX 3249968 . G A, 1534.06 . AS_QUALapprox=|1548|0;AS_VarDP=0|48|0;DP=49;QUALapprox=1548;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=48 GT:AD:DP:GQ:PL:SB 1/1:0,48,0:48:99:1548,144,0,1548,144,1548:0,0,28,20 +chrX 3249969 . T . . END=3252168 GT:DP:GQ:MIN_DP:PL 0/0:54:66:54:0,66,1245 +chrX 3252169 . AT A, 2485.03 . AS_QUALapprox=|2499|0;AS_VarDP=0|67|0;DP=74;QUALapprox=2499;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;VarDP=67 GT:AD:DP:GQ:PL:SB 1/1:0,67,0:67:99:2499,202,0,2499,202,2499:0,0,37,30 +chrX 3252171 . T . . END=3254113 GT:DP:GQ:MIN_DP:PL 0/0:58:39:54:0,39,976 +chrX 3254114 . CAG C, 679.03 . AS_QUALapprox=|693|0;AS_VarDP=0|22|0;DP=42;QUALapprox=693;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151200,42;VarDP=22 GT:AD:DP:GQ:PL:SB 1/1:0,22,0:22:67:693,67,0,693,67,693:0,0,9,13 +chrX 3254117 . A . . END=3254578 GT:DP:GQ:MIN_DP:PL 0/0:44:38:42:0,38,1171 +chrX 3254579 . G A, 587.64 . AS_QUALapprox=|595|0;AS_VarDP=39|24|0;BaseQRankSum=0.265;DP=64;MQRankSum=0.000;QUALapprox=595;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=-0.404;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:39,24,0:63:99:595,0,1061,712,1134,1846:17,22,8,16 +chrX 3254580 . C . . END=3255868 GT:DP:GQ:MIN_DP:PL 0/0:51:98:51:0,98,1245 +chrX 3255869 . G C, 1325.06 . AS_QUALapprox=|1339|0;AS_VarDP=1|42|0;BaseQRankSum=2.329;DP=44;MQRankSum=0.000;QUALapprox=1339;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158400,44;ReadPosRankSum=-1.330;VarDP=43 GT:AD:DP:GQ:PL:SB 1/1:1,42,0:43:99:1339,118,0,1342,125,1349:0,1,19,23 +chrX 3255870 . T . . END=3259376 GT:DP:GQ:MIN_DP:PL 0/0:56:84:56:0,84,1275 +chrX 3259377 . T C, 1955.06 . AS_QUALapprox=|1969|0;AS_VarDP=0|59|0;DP=59;QUALapprox=1969;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1969,177,0,1969,177,1969:0,0,35,24 +chrX 3259378 . T . . END=3262229 GT:DP:GQ:MIN_DP:PL 0/0:54:65:54:0,65,1028 +chrX 3262230 . G GGT, 296.60 . AS_QUALapprox=|304|0;AS_VarDP=15|14|0;BaseQRankSum=-1.142;DP=46;MQRankSum=0.000;QUALapprox=304;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=0.349;VarDP=29 GT:AD:DP:GQ:PL:SB 0/1:15,14,0:29:99:304,0,345,349,387,736:9,6,5,9 +chrX 3262231 . G . . END=3264436 GT:DP:GQ:MIN_DP:PL 0/0:54:75:54:0,75,1125 +chrX 3264437 . G . . END=3264438 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,907 +chrX 3264439 . T . . END=3264441 GT:DP:GQ:MIN_DP:PL 0/0:31:34:31:0,34,908 +chrX 3264442 . C . . END=3264442 GT:DP:GQ:MIN_DP:PL 0/0:30:12:30:0,12,776 +chrX 3264443 . T . . END=3267519 GT:DP:GQ:MIN_DP:PL 0/0:54:23:42:0,23,759 +chrX 3267520 . C A, 505.64 . AS_QUALapprox=|513|0;AS_VarDP=27|19|0;BaseQRankSum=2.695;DP=46;MQRankSum=0.000;QUALapprox=513;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=-0.971;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:27,19,0:46:99:513,0,660,593,718,1311:13,14,9,10 +chrX 3267521 . C . . END=3272025 GT:DP:GQ:MIN_DP:PL 0/0:55:83:55:0,83,1236 +chrX 3272026 . G A, 582.64 . AS_QUALapprox=|590|0;AS_VarDP=23|22|0;BaseQRankSum=-0.379;DP=46;MQRankSum=0.000;QUALapprox=590;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=0.239;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:23,22,0:45:99:590,0,617,659,683,1342:11,12,9,13 +chrX 3272027 . G . . END=3279506 GT:DP:GQ:MIN_DP:PL 0/0:57:52:57:0,52,1086 +chrX 3279507 . TTTATTA T, 552.03 . AS_QUALapprox=|566|0;AS_VarDP=0|14|0;DP=27;QUALapprox=566;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=14 GT:AD:DP:GQ:PL:SB 1/1:0,14,0:14:42:566,42,0,566,42,566:0,0,6,8 +chrX 3279514 . T . . END=3279548 GT:DP:GQ:MIN_DP:PL 0/0:39:48:39:0,48,720 +chrX 3279549 . A . . END=3279549 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,1131 +chrX 3279550 . T . . END=3289234 GT:DP:GQ:MIN_DP:PL 0/0:57:21:35:0,21,893 +chrX 3289235 . T . . END=3289235 GT:DP:GQ:MIN_DP:PL 0/0:34:18:34:0,18,934 +chrX 3289236 . C . . END=3289254 GT:DP:GQ:MIN_DP:PL 0/0:34:25:33:0,25,799 +chrX 3289255 . A . . END=3289255 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,486 +chrX 3289256 . C . . END=3289263 GT:DP:GQ:MIN_DP:PL 0/0:36:21:35:0,21,907 +chrX 3289264 . G . . END=3289264 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,804 +chrX 3289265 . C . . END=3289721 GT:DP:GQ:MIN_DP:PL 0/0:47:58:47:0,58,927 +chrX 3289722 . C T, 870.64 . AS_QUALapprox=|878|0;AS_VarDP=22|31|0;BaseQRankSum=0.944;DP=54;MQRankSum=-0.804;QUALapprox=878;RAW_GT_COUNT=0,1,0;RAW_MQandDP=193009,54;ReadPosRankSum=0.515;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:22,31,0:53:99:878,0,555,944,649,1593:10,12,15,16 +chrX 3289723 . G . . END=3293306 GT:DP:GQ:MIN_DP:PL 0/0:52:60:52:0,60,998 +chrX 3293307 . T G, 1483.06 . AS_QUALapprox=|1497|0;AS_VarDP=0|45|0;DP=47;QUALapprox=1497;RAW_GT_COUNT=0,0,1;RAW_MQandDP=167200,47;VarDP=45 GT:AD:DP:GQ:PL:SB 1/1:0,45,0:45:99:1497,135,0,1497,135,1497:0,0,29,16 +chrX 3293308 . G . . END=3294257 GT:DP:GQ:MIN_DP:PL 0/0:54:74:54:0,74,1132 +chrX 3294258 . A C, 1383.06 . AS_QUALapprox=|1397|0;AS_VarDP=0|42|0;DP=43;QUALapprox=1397;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154800,43;VarDP=42 GT:AD:DP:GQ:PL:SB 1/1:0,42,0:42:99:1397,126,0,1397,126,1397:0,0,22,20 +chrX 3294259 . C . . END=3294382 GT:DP:GQ:MIN_DP:PL 0/0:51:75:51:0,75,1239 +chrX 3294383 . C G, 1661.06 . AS_QUALapprox=|1675|0;AS_VarDP=0|56|0;DP=57;QUALapprox=1675;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1675,166,0,1675,166,1675:0,0,29,27 +chrX 3294384 . C . . END=3294539 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,108,1569 +chrX 3294540 . T A, 1619.06 . AS_QUALapprox=|1633|0;AS_VarDP=0|49|0;DP=49;QUALapprox=1633;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1633,147,0,1633,147,1633:0,0,25,24 +chrX 3294541 . G . . END=3294781 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 3294782 . G A, 2039.06 . AS_QUALapprox=|2053|0;AS_VarDP=0|62|0;DP=62;QUALapprox=2053;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:0,62,0:62:99:2053,186,0,2053,186,2053:0,0,35,27 +chrX 3294783 . C . . END=3294891 GT:DP:GQ:MIN_DP:PL 0/0:52:72:52:0,72,1249 +chrX 3294892 . A G, 1529.06 . AS_QUALapprox=|1543|0;AS_VarDP=0|48|0;DP=48;QUALapprox=1543;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=48 GT:AD:DP:GQ:PL:SB 1/1:0,48,0:48:99:1543,144,0,1543,144,1543:0,0,26,22 +chrX 3294893 . T . . END=3295018 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,115,1487 +chrX 3295019 . A G, 1978.06 . AS_QUALapprox=|1992|0;AS_VarDP=0|68|0;DP=70;QUALapprox=1992;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;VarDP=68 GT:AD:DP:GQ:PL:SB 1/1:0,68,0:68:99:1992,202,0,1992,202,1992:0,0,34,34 +chrX 3295020 . T . . END=3295474 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,108,1494 +chrX 3295475 . G T, 2158.06 . AS_QUALapprox=|2172|0;AS_VarDP=0|69|0;DP=69;QUALapprox=2172;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=69 GT:AD:DP:GQ:PL:SB 1/1:0,69,0:69:99:2172,206,0,2172,206,2172:0,0,37,32 +chrX 3295476 . A . . END=3295540 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 3295541 . G A, 2258.06 . AS_QUALapprox=|2272|0;AS_VarDP=0|69|0;DP=71;QUALapprox=2272;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;VarDP=69 GT:AD:DP:GQ:PL:SB 1/1:0,69,0:69:99:2272,207,0,2272,207,2272:0,0,30,39 +chrX 3295542 . C . . END=3295761 GT:DP:GQ:MIN_DP:PL 0/0:52:93:52:0,93,1296 +chrX 3295762 . C T, 1619.06 . AS_QUALapprox=|1633|0;AS_VarDP=0|47|0;DP=49;QUALapprox=1633;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1633,141,0,1633,141,1633:0,0,24,23 +chrX 3295763 . A . . END=3295869 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,110,1684 +chrX 3295870 . A G, 1840.06 . AS_QUALapprox=|1854|0;AS_VarDP=0|58|0;DP=62;QUALapprox=1854;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=58 GT:AD:DP:GQ:PL:SB 1/1:0,58,0:58:99:1854,173,0,1854,173,1854:0,0,34,24 +chrX 3295871 . G . . END=3296134 GT:DP:GQ:MIN_DP:PL 0/0:55:97:55:0,97,1548 +chrX 3296135 . C A, 1746.06 . AS_QUALapprox=|1760|0;AS_VarDP=0|54|0;DP=55;QUALapprox=1760;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:1760,162,0,1760,162,1760:0,0,25,29 +chrX 3296136 . C . . END=3296270 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 3296271 . T G, 2119.06 . AS_QUALapprox=|2133|0;AS_VarDP=0|66|0;DP=67;QUALapprox=2133;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=66 GT:AD:DP:GQ:PL:SB 1/1:0,66,0:66:99:2133,198,0,2133,198,2133:0,0,39,27 +chrX 3296272 . A . . END=3296771 GT:DP:GQ:MIN_DP:PL 0/0:66:59:66:0,59,1540 +chrX 3296772 . T TTTTA, 2669.03 . AS_QUALapprox=|2683|0;AS_VarDP=0|61|0;DP=65;QUALapprox=2683;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=61 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:2683,183,0,2683,184,2683:0,0,30,31 +chrX 3296773 . T . . END=3296913 GT:DP:GQ:MIN_DP:PL 0/0:58:83:58:0,83,1629 +chrX 3296914 . T A, 1725.06 . AS_QUALapprox=|1739|0;AS_VarDP=0|52|0;DP=56;QUALapprox=1739;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1739,156,0,1739,156,1739:0,0,28,24 +chrX 3296915 . T . . END=3296924 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 3296925 . A G, 1773.06 . AS_QUALapprox=|1787|0;AS_VarDP=0|54|0;DP=55;QUALapprox=1787;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:1787,162,0,1787,162,1787:0,0,28,26 +chrX 3296926 . G . . END=3297358 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,115,1469 +chrX 3297359 . G A, 1637.06 . AS_QUALapprox=|1651|0;AS_VarDP=0|51|0;DP=51;QUALapprox=1651;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1651,153,0,1651,153,1651:0,0,20,31 +chrX 3297360 . A . . END=3297407 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,113,1719 +chrX 3297408 . T A, 1772.06 . AS_QUALapprox=|1786|0;AS_VarDP=0|53|0;DP=56;QUALapprox=1786;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1786,159,0,1786,159,1786:0,0,25,28 +chrX 3297409 . T . . END=3297449 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 3297450 . A T, 2046.06 . AS_QUALapprox=|2060|0;AS_VarDP=0|62|0;DP=64;QUALapprox=2060;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:0,62,0:62:99:2060,186,0,2060,186,2060:0,0,36,26 +chrX 3297451 . T . . END=3297610 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 3297611 . T C, 1678.06 . AS_QUALapprox=|1692|0;AS_VarDP=0|53|0;DP=56;QUALapprox=1692;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1692,158,0,1692,158,1692:0,0,22,31 +chrX 3297612 . T . . END=3297783 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 3297784 . A G, 1904.06 . AS_QUALapprox=|1918|0;AS_VarDP=0|62|0;DP=65;QUALapprox=1918;RAW_GT_COUNT=0,0,1;RAW_MQandDP=232446,65;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:0,62,0:62:99:1918,186,0,1918,186,1918:0,0,31,31 +chrX 3297785 . A . . END=3297918 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 3297919 . A G, 1880.06 . AS_QUALapprox=|1894|0;AS_VarDP=0|57|0;DP=59;QUALapprox=1894;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1894,171,0,1894,171,1894:0,0,27,30 +chrX 3297920 . A . . END=3297973 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 3297974 . T C, 1782.06 . AS_QUALapprox=|1796|0;AS_VarDP=0|57|0;DP=60;QUALapprox=1796;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1796,171,0,1796,171,1796:0,0,24,33 +chrX 3297975 . G . . END=3298018 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 3298019 . C G, 1777.06 . AS_QUALapprox=|1791|0;AS_VarDP=0|56|0;DP=57;QUALapprox=1791;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1791,168,0,1791,168,1791:0,0,25,31 +chrX 3298020 . G . . END=3298075 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 3298076 . A G, 1971.06 . AS_QUALapprox=|1985|0;AS_VarDP=0|60|0;DP=60;QUALapprox=1985;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:1985,180,0,1985,180,1985:0,0,31,29 +chrX 3298077 . C . . END=3298180 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 3298181 . C T, 1856.06 . AS_QUALapprox=|1870|0;AS_VarDP=0|58|0;DP=58;QUALapprox=1870;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=58 GT:AD:DP:GQ:PL:SB 1/1:0,58,0:58:99:1870,174,0,1870,174,1870:0,0,31,27 +chrX 3298182 . G . . END=3298215 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 3298216 . T C, 1827.06 . AS_QUALapprox=|1841|0;AS_VarDP=0|57|0;DP=60;QUALapprox=1841;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1841,170,0,1841,170,1841:0,0,31,26 +chrX 3298217 . A . . END=3298267 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 3298268 . C A, 2109.06 . AS_QUALapprox=|2123|0;AS_VarDP=0|63|0;DP=66;QUALapprox=2123;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=63 GT:AD:DP:GQ:PL:SB 1/1:0,63,0:63:99:2123,189,0,2123,189,2123:0,0,37,26 +chrX 3298269 . A . . END=3298284 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 3298285 . A G, 2065.06 . AS_QUALapprox=|2079|0;AS_VarDP=1|64|0;BaseQRankSum=2.038;DP=65;MQRankSum=0.000;QUALapprox=2079;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;ReadPosRankSum=-1.093;VarDP=65 GT:AD:DP:GQ:PL:SB 1/1:1,64,0:65:99:2079,171,0,2082,192,2103:0,1,38,26 +chrX 3298286 . G . . END=3298523 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 3298524 . C T, 2228.06 . AS_QUALapprox=|2242|0;AS_VarDP=0|67|0;DP=68;QUALapprox=2242;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;VarDP=67 GT:AD:DP:GQ:PL:SB 1/1:0,67,0:67:99:2242,201,0,2242,201,2242:0,0,34,33 +chrX 3298525 . A . . END=3298681 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,117,1484 +chrX 3298682 . A G, 1455.06 . AS_QUALapprox=|1469|0;AS_VarDP=0|44|0;DP=47;QUALapprox=1469;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;VarDP=44 GT:AD:DP:GQ:PL:SB 1/1:0,44,0:44:99:1469,132,0,1469,132,1469:0,0,18,26 +chrX 3298683 . C . . END=3298866 GT:DP:GQ:MIN_DP:PL 0/0:53:98:53:0,98,1445 +chrX 3298867 . G A, 1639.06 . AS_QUALapprox=|1653|0;AS_VarDP=0|49|0;DP=49;QUALapprox=1653;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1653,147,0,1653,147,1653:0,0,30,19 +chrX 3298868 . G . . END=3299137 GT:DP:GQ:MIN_DP:PL 0/0:54:70:54:0,70,1400 +chrX 3299138 . A T, 2550.06 . AS_QUALapprox=|2564|0;AS_VarDP=0|57|0;DP=57;QUALapprox=2564;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=57 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,57,0:57:99:0|1:3299138_A_T:2564,172,0,2564,172,2564:3299138:0,0,28,29 +chrX 3299139 . G A, 2550.06 . AS_QUALapprox=|2564|0;AS_VarDP=0|57|0;DP=57;QUALapprox=2564;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=57 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,57,0:57:99:0|1:3299138_A_T:2564,172,0,2564,172,2564:3299138:0,0,28,29 +chrX 3299140 . G . . END=3299910 GT:DP:GQ:MIN_DP:PL 0/0:55:43:55:0,43,1363 +chrX 3299911 . G GGA,GGAGA,GGAGAGA, 1736.02 . AS_QUALapprox=|855|427|1009|0;AS_VarDP=0|22|1|23|0;DP=54;QUALapprox=1753;RAW_GT_COUNT=0,0,1;RAW_MQandDP=192400,54;VarDP=46 GT:AD:DP:GQ:PL:SB 1/3:0,22,1,23,0:46:99:1753,979,898,1401,719,1326,744,0,702,852,1656,965,1396,738,1644:0,0,27,19 +chrX 3299912 . G . . END=3299963 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,119,1498 +chrX 3299964 . T C, 1428.06 . AS_QUALapprox=|1442|0;AS_VarDP=0|47|0;DP=49;QUALapprox=1442;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1442,140,0,1442,140,1442:0,0,29,18 +chrX 3299965 . G . . END=3300310 GT:DP:GQ:MIN_DP:PL 0/0:55:96:55:0,96,1315 +chrX 3300311 . A G, 1604.06 . AS_QUALapprox=|1618|0;AS_VarDP=0|50|0;DP=51;QUALapprox=1618;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1618,149,0,1618,149,1618:0,0,28,22 +chrX 3300312 . G . . END=3300328 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 3300329 . G T, 1712.06 . AS_QUALapprox=|1726|0;AS_VarDP=0|52|0;DP=54;QUALapprox=1726;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1726,156,0,1726,156,1726:0,0,29,23 +chrX 3300330 . T . . END=3300566 GT:DP:GQ:MIN_DP:PL 0/0:49:41:49:0,41,1265 +chrX 3300567 . G A, 1413.06 . AS_QUALapprox=|1427|0;AS_VarDP=0|42|0;DP=42;QUALapprox=1427;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151200,42;VarDP=42 GT:AD:DP:GQ:PL:SB 1/1:0,42,0:42:99:1427,126,0,1427,126,1427:0,0,19,23 +chrX 3300568 . A . . END=3300703 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,100,1252 +chrX 3300704 . G A, 1786.06 . AS_QUALapprox=|1800|0;AS_VarDP=0|55|0;DP=57;QUALapprox=1800;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1800,164,0,1800,164,1800:0,0,29,26 +chrX 3300705 . T . . END=3300765 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 3300766 . T C, 2304.06 . AS_QUALapprox=|2318|0;AS_VarDP=0|52|0;DP=54;QUALapprox=2318;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,52,0:52:99:0|1:3300766_T_C:2318,157,0,2318,157,2318:3300766:0,0,24,28 +chrX 3300767 . G . . END=3300772 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 3300773 . T C, 2364.06 . AS_QUALapprox=|2378|0;AS_VarDP=0|54|0;DP=54;QUALapprox=2378;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,54,0:54:99:0|1:3300766_T_C:2378,163,0,2378,163,2378:3300766:0,0,25,29 +chrX 3300774 . A . . END=3300999 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,109,1682 +chrX 3301000 . A C, 1813.06 . AS_QUALapprox=|1827|0;AS_VarDP=0|57|0;DP=59;QUALapprox=1827;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1827,170,0,1827,170,1827:0,0,35,22 +chrX 3301001 . C . . END=3301087 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 3301088 . G A, 1803.06 . AS_QUALapprox=|1817|0;AS_VarDP=0|55|0;DP=55;QUALapprox=1817;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1817,165,0,1817,165,1817:0,0,28,27 +chrX 3301089 . T . . END=3301234 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 3301235 . A C, 1761.06 . AS_QUALapprox=|1775|0;AS_VarDP=0|54|0;DP=54;QUALapprox=1775;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:1775,162,0,1775,162,1775:0,0,26,28 +chrX 3301236 . A . . END=3301301 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1549 +chrX 3301302 . T C, 1613.06 . AS_QUALapprox=|1627|0;AS_VarDP=0|48|0;DP=48;QUALapprox=1627;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=48 GT:AD:DP:GQ:PL:SB 1/1:0,48,0:48:99:1627,144,0,1627,144,1627:0,0,24,24 +chrX 3301303 . A . . END=3301495 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,101,1406 +chrX 3301496 . G A, 1901.06 . AS_QUALapprox=|1915|0;AS_VarDP=0|43|0;DP=43;QUALapprox=1915;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154800,43;VarDP=43 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,43,0:43:99:0|1:3301496_G_A:1915,129,0,1915,129,1915:3301496:0,0,19,24 +chrX 3301497 . G . . END=3301502 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,120,1800 +chrX 3301503 . G A, 1901.06 . AS_QUALapprox=|1915|0;AS_VarDP=0|43|0;DP=43;QUALapprox=1915;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154800,43;VarDP=43 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,43,0:43:99:0|1:3301496_G_A:1915,129,0,1915,129,1915:3301496:0,0,19,24 +chrX 3301504 . C . . END=3301745 GT:DP:GQ:MIN_DP:PL 0/0:49:88:49:0,88,1245 +chrX 3301746 . G T, 2384.06 . AS_QUALapprox=|2398|0;AS_VarDP=0|54|0;DP=55;QUALapprox=2398;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,54,0:54:99:0|1:3301746_G_T:2398,163,0,2398,163,2398:3301746:0,0,32,22 +chrX 3301747 . G . . END=3301749 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 3301750 . C T, 2360.06 . AS_QUALapprox=|2374|0;AS_VarDP=0|53|0;DP=54;QUALapprox=2374;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,53,0:53:99:0|1:3301746_G_T:2374,160,0,2374,160,2374:3301746:0,0,31,22 +chrX 3301751 . G . . END=3301763 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 3301764 . G A, 1613.06 . AS_QUALapprox=|1627|0;AS_VarDP=0|50|0;DP=52;QUALapprox=1627;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1627,149,0,1627,149,1627:0,0,30,20 +chrX 3301765 . T . . END=3301814 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,118,1454 +chrX 3301815 . C CT, 1384.03 . AS_QUALapprox=|1398|0;AS_VarDP=0|50|0;DP=56;QUALapprox=1398;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1398,150,0,1398,150,1398:0,0,23,27 +chrX 3301816 . T . . END=3301904 GT:DP:GQ:MIN_DP:PL 0/0:52:83:52:0,83,1533 +chrX 3301905 . C T, 1454.06 . AS_QUALapprox=|1468|0;AS_VarDP=0|47|0;DP=48;QUALapprox=1468;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1468,140,0,1468,140,1468:0,0,21,26 +chrX 3301906 . A . . END=3302057 GT:DP:GQ:MIN_DP:PL 0/0:46:90:46:0,90,1266 +chrX 3302058 . A G, 1474.06 . AS_QUALapprox=|1488|0;AS_VarDP=0|47|0;DP=49;QUALapprox=1488;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1488,141,0,1488,141,1488:0,0,28,19 +chrX 3302059 . G . . END=3302629 GT:DP:GQ:MIN_DP:PL 0/0:51:86:51:0,86,1191 +chrX 3302630 . C G, 1545.06 . AS_QUALapprox=|1559|0;AS_VarDP=0|47|0;DP=50;QUALapprox=1559;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1559,141,0,1559,141,1559:0,0,21,26 +chrX 3302631 . T . . END=3302677 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 3302678 . G A, 1768.06 . AS_QUALapprox=|1782|0;AS_VarDP=0|53|0;DP=54;QUALapprox=1782;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1782,159,0,1782,159,1782:0,0,29,24 +chrX 3302679 . T . . END=3302701 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 3302702 . A G, 1871.06 . AS_QUALapprox=|1885|0;AS_VarDP=0|56|0;DP=59;QUALapprox=1885;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1885,168,0,1885,168,1885:0,0,31,25 +chrX 3302703 . T . . END=3302879 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 3302880 . T C, 2130.06 . AS_QUALapprox=|2144|0;AS_VarDP=0|66|0;DP=67;QUALapprox=2144;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=66 GT:AD:DP:GQ:PL:SB 1/1:0,66,0:66:99:2144,198,0,2144,198,2144:0,0,33,33 +chrX 3302881 . T . . END=3303015 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 3303016 . T C, 1466.06 . AS_QUALapprox=|1480|0;AS_VarDP=0|44|0;DP=48;QUALapprox=1480;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=44 GT:AD:DP:GQ:PL:SB 1/1:0,44,0:44:99:1480,132,0,1480,132,1480:0,0,18,26 +chrX 3303017 . G . . END=3303066 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 3303067 . CAGGCTTCTCACTG C, 2272.03 . AS_QUALapprox=|2286|0;AS_VarDP=1|52|0;BaseQRankSum=-0.495;DP=56;MQRankSum=0.000;QUALapprox=2286;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;ReadPosRankSum=0.949;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:1,52,0:53:99:2286,115,0,2289,157,2331:1,0,22,30 +chrX 3303081 . A . . END=3303096 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,117,1755 +chrX 3303097 . A C, 1598.06 . AS_QUALapprox=|1612|0;AS_VarDP=1|54|0;BaseQRankSum=-0.811;DP=56;MQRankSum=0.000;QUALapprox=1612;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;ReadPosRankSum=-0.315;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:1,54,0:55:99:1612,130,0,1615,162,1646:1,0,22,32 +chrX 3303098 . G . . END=3303199 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,110,1565 +chrX 3303200 . C T, 1608.06 . AS_QUALapprox=|1622|0;AS_VarDP=2|49|0;BaseQRankSum=1.953;DP=53;MQRankSum=0.000;QUALapprox=1622;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;ReadPosRankSum=1.311;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:2,49,0:51:99:1622,109,0,1628,147,1667:1,1,28,21 +chrX 3303201 . T . . END=3303264 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 3303265 . T C, 1592.06 . AS_QUALapprox=|1606|0;AS_VarDP=1|52|0;BaseQRankSum=-0.584;DP=56;MQRankSum=0.000;QUALapprox=1606;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;ReadPosRankSum=-1.210;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:1,52,0:53:99:1606,124,0,1609,156,1641:0,1,29,23 +chrX 3303266 . C . . END=3303393 GT:DP:GQ:MIN_DP:PL 0/0:37:27:35:0,27,1028 +chrX 3303394 . CAA C, 510 . AS_QUALapprox=|524|0;AS_VarDP=3|21|0;DP=46;MQRankSum=-0.607;QUALapprox=524;RAW_GT_COUNT=0,0,1;RAW_MQandDP=155158,46;VarDP=24 GT:AD:DP:GQ:PL:SB 1/1:3,21,0:24:13:524,13,0,533,63,583:0,3,18,3 +chrX 3303397 . A . . END=3303439 GT:DP:GQ:MIN_DP:PL 0/0:44:96:44:0,96,1440 +chrX 3303440 . A G, 1740.06 . AS_QUALapprox=|1754|0;AS_VarDP=0|53|0;DP=58;QUALapprox=1754;RAW_GT_COUNT=0,0,1;RAW_MQandDP=202041,58;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1754,159,0,1754,159,1754:0,0,30,23 +chrX 3303441 . G . . END=3303558 GT:DP:GQ:MIN_DP:PL 0/0:75:93:75:0,93,1742 +chrX 3303559 . A G, 2531.06 . AS_QUALapprox=|2545|0;AS_VarDP=0|78|0;DP=78;QUALapprox=2545;RAW_GT_COUNT=0,0,1;RAW_MQandDP=280800,78;VarDP=78 GT:AD:DP:GQ:PL:SB 1/1:0,78,0:78:99:2545,233,0,2545,233,2545:0,0,35,43 +chrX 3303560 . A . . END=3303782 GT:DP:GQ:MIN_DP:PL 0/0:59:76:59:0,76,1366 +chrX 3303783 . G A, 1251.06 . AS_QUALapprox=|1265|0;AS_VarDP=0|40|0;DP=40;QUALapprox=1265;RAW_GT_COUNT=0,0,1;RAW_MQandDP=144000,40;VarDP=40 GT:AD:DP:GQ:PL:SB 1/1:0,40,0:40:99:1265,119,0,1265,119,1265:0,0,21,19 +chrX 3303784 . A . . END=3303895 GT:DP:GQ:MIN_DP:PL 0/0:44:30:43:0,30,1136 +chrX 3303896 . T C, 1335.06 . AS_QUALapprox=|1349|0;AS_VarDP=0|40|0;DP=43;QUALapprox=1349;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154800,43;VarDP=40 GT:AD:DP:GQ:PL:SB 1/1:0,40,0:40:99:1349,120,0,1349,120,1349:0,0,22,18 +chrX 3303897 . C . . END=3304087 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,108,1313 +chrX 3304088 . G A, 1304.06 . AS_QUALapprox=|1318|0;AS_VarDP=0|42|0;DP=44;QUALapprox=1318;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158400,44;VarDP=42 GT:AD:DP:GQ:PL:SB 1/1:0,42,0:42:99:1318,125,0,1318,125,1318:0,0,22,20 +chrX 3304089 . C . . END=3304106 GT:DP:GQ:MIN_DP:PL 0/0:41:96:41:0,96,1261 +chrX 3304107 . C G, 1256.06 . AS_QUALapprox=|1270|0;AS_VarDP=0|39|0;DP=39;QUALapprox=1270;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140400,39;VarDP=39 GT:AD:DP:GQ:PL:SB 1/1:0,39,0:39:99:1270,117,0,1270,117,1270:0,0,19,20 +chrX 3304108 . T . . END=3304129 GT:DP:GQ:MIN_DP:PL 0/0:37:93:37:0,93,1395 +chrX 3304130 . C A,CAA, 1248.06 . AS_QUALapprox=|1262|61|0;AS_VarDP=0|33|0|0;DP=39;QUALapprox=1262;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140400,39;VarDP=33 GT:AD:DP:GQ:PL:SB 1/1:0,33,0,0:33:99:1262,111,0,1201,102,1335,1245,114,1281,1298:0,0,17,16 +chrX 3304131 . A . . END=3304190 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,105,1575 +chrX 3304191 . G A, 1666.06 . AS_QUALapprox=|1680|0;AS_VarDP=0|53|0;DP=56;QUALapprox=1680;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1680,158,0,1680,158,1680:0,0,31,22 +chrX 3304192 . T . . END=3304250 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 3304251 . T C, 1887.06 . AS_QUALapprox=|1901|0;AS_VarDP=0|57|0;DP=61;QUALapprox=1901;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219249,61;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1901,171,0,1901,171,1901:0,0,36,21 +chrX 3304252 . C . . END=3304396 GT:DP:GQ:MIN_DP:PL 0/0:56:90:56:0,90,1598 +chrX 3304397 . A G, 1756.06 . AS_QUALapprox=|1770|0;AS_VarDP=0|54|0;DP=55;QUALapprox=1770;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:1770,162,0,1770,162,1770:0,0,32,22 +chrX 3304398 . G . . END=3304459 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 3304460 . T C, 1884.06 . AS_QUALapprox=|1898|0;AS_VarDP=0|63|0;DP=63;QUALapprox=1898;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=63 GT:AD:DP:GQ:PL:SB 1/1:0,63,0:63:99:1898,188,0,1898,188,1898:0,0,34,29 +chrX 3304461 . G . . END=3304505 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 3304506 . T G, 1979.06 . AS_QUALapprox=|1993|0;AS_VarDP=0|64|0;DP=65;QUALapprox=1993;RAW_GT_COUNT=0,0,1;RAW_MQandDP=233209,65;VarDP=64 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:1993,191,0,1993,191,1993:0,0,31,33 +chrX 3304507 . T . . END=3305114 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 3305115 . G A, 1613.06 . AS_QUALapprox=|1627|0;AS_VarDP=0|51|0;DP=52;QUALapprox=1627;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1627,153,0,1627,153,1627:0,0,27,24 +chrX 3305116 . T . . END=3305451 GT:DP:GQ:MIN_DP:PL 0/0:53:98:53:0,98,1381 +chrX 3305452 . C T, 1820.06 . AS_QUALapprox=|1834|0;AS_VarDP=0|56|0;DP=57;QUALapprox=1834;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1834,167,0,1834,167,1834:0,0,25,31 +chrX 3305453 . C . . END=3305601 GT:DP:GQ:MIN_DP:PL 0/0:48:98:48:0,98,1390 +chrX 3305602 . A G, 1551.06 . AS_QUALapprox=|1565|0;AS_VarDP=0|47|0;DP=48;QUALapprox=1565;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172009,48;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1565,141,0,1565,141,1565:0,0,29,18 +chrX 3305603 . G . . END=3305683 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1569 +chrX 3305684 . T C, 1846.06 . AS_QUALapprox=|1860|0;AS_VarDP=0|57|0;DP=57;QUALapprox=1860;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1860,170,0,1860,170,1860:0,0,34,23 +chrX 3305685 . A . . END=3305827 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 3305828 . CT C, 2672.03 . AS_QUALapprox=|2686|0;AS_VarDP=0|78|0;DP=80;QUALapprox=2686;RAW_GT_COUNT=0,0,1;RAW_MQandDP=288000,80;VarDP=78 GT:AD:DP:GQ:PL:SB 1/1:0,78,0:78:99:2686,235,0,2686,235,2686:0,0,35,43 +chrX 3305830 . T . . END=3305844 GT:DP:GQ:MIN_DP:PL 0/0:78:99:78:0,120,1800 +chrX 3305845 . C T, 2478.06 . AS_QUALapprox=|2492|0;AS_VarDP=0|78|0;DP=80;QUALapprox=2492;RAW_GT_COUNT=0,0,1;RAW_MQandDP=288000,80;VarDP=78 GT:AD:DP:GQ:PL:SB 1/1:0,78,0:78:99:2492,234,0,2492,234,2492:0,0,34,44 +chrX 3305846 . C . . END=3306163 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,106,1412 +chrX 3306164 . G A, 980.64 . AS_QUALapprox=|988|0;AS_VarDP=27|26|0;BaseQRankSum=-1.413;DP=53;MQRankSum=0.000;QUALapprox=988;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=-0.463;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,26,0:53:99:0|1:3306164_G_A:988,0,1034,1070,1112,2182:3306164:13,14,14,12 +chrX 3306165 . G A, 980.64 . AS_QUALapprox=|988|0;AS_VarDP=27|26|0;BaseQRankSum=-1.458;DP=54;MQRankSum=0.000;QUALapprox=988;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=-0.383;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,26,0:53:99:0|1:3306164_G_A:988,0,1034,1070,1112,2182:3306164:13,14,14,12 +chrX 3306166 . G . . END=3306178 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 3306179 . C A, 673.64 . AS_QUALapprox=|681|0;AS_VarDP=28|26|0;BaseQRankSum=-1.193;DP=56;MQRankSum=0.000;QUALapprox=681;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=0.857;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:28,26,0:54:99:681,0,780,766,858,1623:13,15,13,13 +chrX 3306180 . C . . END=3306215 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 3306216 . A G, 818.64 . AS_QUALapprox=|826|0;AS_VarDP=30|32|0;BaseQRankSum=0.293;DP=66;MQRankSum=0.000;QUALapprox=826;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=0.937;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:30,32,0:62:99:826,0,777,916,873,1789:11,19,15,17 +chrX 3306217 . T . . END=3306936 GT:DP:GQ:MIN_DP:PL 0/0:61:72:61:0,72,1420 +chrX 3306937 . A . . END=3306940 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,1007 +chrX 3306941 . A . . END=3306945 GT:DP:GQ:MIN_DP:PL 0/0:42:97:42:0,97,1291 +chrX 3306946 . TC T, 623.60 . AS_QUALapprox=|631|0;AS_VarDP=23|17|0;BaseQRankSum=0.789;DP=41;MQRankSum=-0.145;QUALapprox=631;RAW_GT_COUNT=0,1,0;RAW_MQandDP=145136,41;ReadPosRankSum=0.808;VarDP=40 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,17,0:40:99:0|1:3306946_TC_T:631,0,901,700,952,1652:3306946:11,12,7,10 +chrX 3306948 . A . . END=3306957 GT:DP:GQ:MIN_DP:PL 0/0:40:96:40:0,96,1440 +chrX 3306958 . C CA, 801.60 . AS_QUALapprox=|809|0;AS_VarDP=21|21|0;BaseQRankSum=1.547;DP=42;MQRankSum=-0.507;QUALapprox=809;RAW_GT_COUNT=0,1,0;RAW_MQandDP=148617,42;ReadPosRankSum=1.879;VarDP=42 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,21,0:42:99:0|1:3306946_TC_T:809,0,814,873,877,1750:3306946:10,11,8,13 +chrX 3306959 . T TCTATC, 801.60 . AS_QUALapprox=|809|0;AS_VarDP=21|21|0;BaseQRankSum=0.906;DP=42;MQRankSum=-0.507;QUALapprox=809;RAW_GT_COUNT=0,1,0;RAW_MQandDP=148617,42;ReadPosRankSum=1.111;VarDP=42 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,21,0:42:99:0|1:3306946_TC_T:809,0,819,873,882,1754:3306946:10,11,8,13 +chrX 3306960 . A . . END=3306961 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,111,1665 +chrX 3306962 . G GTATC,C, 1409.06 . AS_QUALapprox=|663|808|0;AS_VarDP=0|15|20|0;DP=42;QUALapprox=1426;RAW_GT_COUNT=0,0,1;RAW_MQandDP=148617,42;VarDP=35 GT:AD:DP:GQ:PL:SB 1/2:0,15,20,0:35:99:1426,808,763,618,0,853,1447,829,776,1585:0,0,15,20 +chrX 3306963 . T . . END=3306973 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,99,1485 +chrX 3306974 . C G, 834.64 . AS_QUALapprox=|842|0;AS_VarDP=24|23|0;BaseQRankSum=-0.865;DP=47;MQRankSum=-0.552;QUALapprox=842;RAW_GT_COUNT=0,1,0;RAW_MQandDP=166617,47;ReadPosRankSum=0.170;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,23,0:47:99:0|1:3306946_TC_T:842,0,887,915,956,1871:3306946:11,13,9,14 +chrX 3306975 . T . . END=3307023 GT:DP:GQ:MIN_DP:PL 0/0:42:69:42:0,69,1035 +chrX 3307024 . T . . END=3307034 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,332 +chrX 3307035 . GTATC G, 305.04 . AS_QUALapprox=|800|0;AS_VarDP=17|21|0;BaseQRankSum=-0.111;DP=39;MQRankSum=0.000;QUALapprox=800;RAW_GT_COUNT=0,1,0;RAW_MQandDP=139009,39;ReadPosRankSum=1.621;VarDP=38 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:17,21,0:38:99:0|1:3307035_GTATC_G:800,0,640,586,703,1253:3307035:8,9,1,6 +chrX 3307040 . T . . END=3307054 GT:DP:GQ:MIN_DP:PL 0/0:39:78:39:0,78,1170 +chrX 3307055 . GTATCTATGTATC G, 216.60 . AS_QUALapprox=|224|0;AS_VarDP=15|7|0;BaseQRankSum=0.369;DP=46;MQRankSum=0.000;QUALapprox=224;RAW_GT_COUNT=0,1,0;RAW_MQandDP=164209,46;ReadPosRankSum=1.481;VarDP=22 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:15,7,0:22:99:0|1:3307035_GTATC_G:224,0,608,269,630,899:3307035:8,7,1,6 +chrX 3307063 . GTATC *,G, 272.01 . AS_QUALapprox=|0|629|0;AS_VarDP=0|7|7|0;DP=44;QUALapprox=912;RAW_GT_COUNT=0,0,1;RAW_MQandDP=157009,44;VarDP=14 GT:AD:DP:GQ:PL:SB 1/2:0,7,7,0:14:99:912,282,527,283,0,778,799,477,596,1160:0,0,5,9 +chrX 3307068 . T . . END=3307423 GT:DP:GQ:MIN_DP:PL 0/0:39:39:36:0,39,968 +chrX 3307424 . T TTATC, 734.60 . AS_QUALapprox=|742|0;AS_VarDP=29|20|0;BaseQRankSum=-1.815;DP=57;MQRankSum=0.000;QUALapprox=742;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-0.783;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:29,20,0:49:99:742,0,1158,829,1218,2048:14,15,8,12 +chrX 3307425 . T . . END=3310369 GT:DP:GQ:MIN_DP:PL 0/0:59:77:59:0,77,1191 +chrX 3310370 . G A, 525.64 . AS_QUALapprox=|533|0;AS_VarDP=32|22|0;BaseQRankSum=0.323;DP=56;MQRankSum=-1.583;QUALapprox=533;RAW_GT_COUNT=0,1,0;RAW_MQandDP=117349,56;ReadPosRankSum=0.467;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:32,22,0:54:99:533,0,848,629,914,1544:20,12,9,13 +chrX 3310371 . G . . END=3310611 GT:DP:GQ:MIN_DP:PL 0/0:50:73:50:0,73,1118 +chrX 3310612 . G C, 218.64 . AS_QUALapprox=|226|0;AS_VarDP=29|8|0;BaseQRankSum=1.275;DP=38;MQRankSum=-5.275;QUALapprox=226;RAW_GT_COUNT=0,1,0;RAW_MQandDP=116114,38;ReadPosRankSum=0.277;VarDP=37 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,8,0:37:99:0|1:3310612_G_C:226,0,1192,314,1216,1530:3310612:14,15,6,2 +chrX 3310613 . G . . END=3310621 GT:DP:GQ:MIN_DP:PL 0/0:35:88:35:0,88,1052 +chrX 3310622 . G C, 154.64 . AS_QUALapprox=|162|0;AS_VarDP=30|6|0;BaseQRankSum=1.096;DP=38;MQRankSum=-4.814;QUALapprox=162;RAW_GT_COUNT=0,1,0;RAW_MQandDP=117436,38;ReadPosRankSum=1.677;VarDP=36 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:30,6,0:36:99:0|1:3310612_G_C:162,0,1230,252,1248,1500:3310612:14,16,6,0 +chrX 3310623 . G . . END=3310849 GT:DP:GQ:MIN_DP:PL 0/0:42:92:42:0,92,1201 +chrX 3310850 . A G, 608.64 . AS_QUALapprox=|616|0;AS_VarDP=36|25|0;BaseQRankSum=0.275;DP=63;MQRankSum=-5.008;QUALapprox=616;RAW_GT_COUNT=0,1,0;RAW_MQandDP=203723,63;ReadPosRankSum=-0.381;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:36,25,0:61:99:616,0,998,724,1073,1797:20,16,13,12 +chrX 3310851 . G . . END=3311992 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,100,1330 +chrX 3311993 . A T, 797.64 . AS_QUALapprox=|805|0;AS_VarDP=32|29|0;BaseQRankSum=2.380;DP=62;MQRankSum=0.000;QUALapprox=805;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=0.051;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:32,29,0:61:99:805,0,829,901,916,1817:15,17,10,19 +chrX 3311994 . G . . END=3312258 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 3312259 . C G, 485.64 . AS_QUALapprox=|493|0;AS_VarDP=38|21|0;BaseQRankSum=-0.399;DP=65;MQRankSum=0.000;QUALapprox=493;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=0.974;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:38,21,0:59:99:493,0,1053,607,1117,1723:22,16,11,10 +chrX 3312260 . T . . END=3312729 GT:DP:GQ:MIN_DP:PL 0/0:55:62:55:0,62,921 +chrX 3312730 . GT G, 563.60 . AS_QUALapprox=|571|0;AS_VarDP=21|23|0;BaseQRankSum=-1.075;DP=54;MQRankSum=0.000;QUALapprox=571;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=0.212;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:21,23,0:44:99:571,0,506,634,575,1209:12,9,9,14 +chrX 3312732 . T . . END=3313216 GT:DP:GQ:MIN_DP:PL 0/0:56:74:56:0,74,1250 +chrX 3313217 . A G, 586.64 . AS_QUALapprox=|594|0;AS_VarDP=28|22|0;BaseQRankSum=-0.229;DP=53;MQRankSum=0.000;QUALapprox=594;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=0.479;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:28,22,0:50:99:594,0,802,679,869,1547:16,12,5,17 +chrX 3313218 . T . . END=3313316 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 3313317 . C T, 677.64 . AS_QUALapprox=|685|0;AS_VarDP=38|28|0;BaseQRankSum=-0.923;DP=67;MQRankSum=0.000;QUALapprox=685;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=0.714;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:38,28,0:66:99:685,0,1028,799,1112,1911:27,11,13,15 +chrX 3313318 . G . . END=3313369 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 3313370 . C T, 1098.64 . AS_QUALapprox=|1106|0;AS_VarDP=34|30|0;BaseQRankSum=-1.606;DP=66;MQRankSum=0.000;QUALapprox=1106;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=-0.585;VarDP=64 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:34,30,0:64:99:0|1:3313370_C_T:1106,0,1262,1208,1352,2560:3313370:23,11,15,15 +chrX 3313371 . T . . END=3313393 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 3313394 . G A, 1147.64 . AS_QUALapprox=|1155|0;AS_VarDP=32|32|0;BaseQRankSum=-3.098;DP=66;MQRankSum=0.000;QUALapprox=1155;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=-1.021;VarDP=64 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:32,32,0:64:99:0|1:3313370_C_T:1155,0,1183,1251,1279,2530:3313370:20,12,15,17 +chrX 3313395 . G . . END=3313538 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,117,1800 +chrX 3313539 . T C, 311.64 . AS_QUALapprox=|319|0;AS_VarDP=44|17|0;BaseQRankSum=-1.176;DP=63;MQRankSum=0.658;QUALapprox=319;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226116,63;ReadPosRankSum=-0.756;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:44,17,0:61:99:319,0,1213,450,1263,1713:20,24,9,8 +chrX 3313540 . G . . END=3313808 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 3313809 . G A, 772.64 . AS_QUALapprox=|780|0;AS_VarDP=45|34|0;BaseQRankSum=-1.160;DP=82;MQRankSum=0.000;QUALapprox=780;RAW_GT_COUNT=0,1,0;RAW_MQandDP=295200,82;ReadPosRankSum=-0.941;VarDP=79 GT:AD:DP:GQ:PL:SB 0/1:45,34,0:79:99:780,0,1172,914,1273,2188:22,23,20,14 +chrX 3313810 . C . . END=3314062 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 3314063 . A G, 841.64 . AS_QUALapprox=|849|0;AS_VarDP=34|32|0;BaseQRankSum=-0.485;DP=68;MQRankSum=0.000;QUALapprox=849;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=0.911;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:34,32,0:66:99:849,0,944,951,1039,1991:15,19,15,17 +chrX 3314064 . A . . END=3314279 GT:DP:GQ:MIN_DP:PL 0/0:73:99:73:0,120,1800 +chrX 3314280 . A C, 1091.64 . AS_QUALapprox=|1099|0;AS_VarDP=37|40|0;BaseQRankSum=0.723;DP=79;MQRankSum=0.000;QUALapprox=1099;RAW_GT_COUNT=0,1,0;RAW_MQandDP=284400,79;ReadPosRankSum=0.449;VarDP=77 GT:AD:DP:GQ:PL:SB 0/1:37,40,0:77:99:1099,0,934,1211,1055,2265:22,15,18,22 +chrX 3314281 . T . . END=3314657 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,103,1772 +chrX 3314658 . C A, 609.64 . AS_QUALapprox=|617|0;AS_VarDP=24|22|0;BaseQRankSum=1.344;DP=47;MQRankSum=0.000;QUALapprox=617;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=0.891;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:24,22,0:46:99:617,0,641,689,707,1396:10,14,14,8 +chrX 3314659 . T . . END=3314880 GT:DP:GQ:MIN_DP:PL 0/0:52:94:52:0,94,1470 +chrX 3314881 . CAGAT C,CAGATAGAT, 1008.02 . AS_QUALapprox=|282|794|0;AS_VarDP=0|7|18|0;DP=38;QUALapprox=1025;RAW_GT_COUNT=0,0,1;RAW_MQandDP=134800,38;VarDP=25 GT:AD:DP:GQ:PL:SB 1/2:0,7,18,0:25:99:1025,743,860,285,0,231,1036,818,294,1101:0,0,15,10 +chrX 3314886 . A . . END=3315070 GT:DP:GQ:MIN_DP:PL 0/0:46:49:46:0,49,1125 +chrX 3315071 . C A, 478.64 . AS_QUALapprox=|486|0;AS_VarDP=18|17|0;BaseQRankSum=1.769;DP=36;MQRankSum=0.000;QUALapprox=486;RAW_GT_COUNT=0,1,0;RAW_MQandDP=129600,36;ReadPosRankSum=0.842;VarDP=35 GT:AD:DP:GQ:PL:SB 0/1:18,17,0:35:99:486,0,489,540,540,1080:9,9,9,8 +chrX 3315072 . G . . END=3315140 GT:DP:GQ:MIN_DP:PL 0/0:34:62:34:0,62,992 +chrX 3315141 . C T, 393.64 . AS_QUALapprox=|401|0;AS_VarDP=24|16|0;BaseQRankSum=-0.451;DP=41;MQRankSum=0.000;QUALapprox=401;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147600,41;ReadPosRankSum=1.008;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:24,16,0:40:99:401,0,694,473,742,1215:14,10,13,3 +chrX 3315142 . A . . END=3315305 GT:DP:GQ:MIN_DP:PL 0/0:56:69:56:0,69,1035 +chrX 3315306 . A . . END=3315306 GT:DP:GQ:MIN_DP:PL 0/0:65:0:65:0,0,25 +chrX 3315307 . A . . END=3315318 GT:DP:GQ:MIN_DP:PL 0/0:65:76:65:0,76,1731 +chrX 3315319 . G . . END=3315322 GT:DP:GQ:MIN_DP:PL 0/0:64:0:64:0,0,1525 +chrX 3315323 . G . . END=3315324 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 3315325 . T . . END=3315325 GT:DP:GQ:MIN_DP:PL 0/0:61:15:61:0,15,1674 +chrX 3315326 . A . . END=3315326 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 3315327 . G . . END=3315327 GT:DP:GQ:MIN_DP:PL 0/0:59:3:59:0,3,1583 +chrX 3315328 . A . . END=3315328 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 3315329 . T . . END=3315331 GT:DP:GQ:MIN_DP:PL 0/0:62:0:62:0,0,1496 +chrX 3315332 . A . . END=3315332 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 3315333 . T . . END=3315337 GT:DP:GQ:MIN_DP:PL 0/0:60:0:60:0,0,457 +chrX 3315338 . A . . END=3315339 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 3315340 . A . . END=3315340 GT:DP:GQ:MIN_DP:PL 0/0:57:0:57:0,0,1504 +chrX 3315341 . G . . END=3315350 GT:DP:GQ:MIN_DP:PL 0/0:58:67:58:0,67,1641 +chrX 3315351 . A . . END=3315351 GT:DP:GQ:MIN_DP:PL 0/0:56:0:56:0,0,1449 +chrX 3315352 . G . . END=3315362 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 3315363 . AGATAGATAGAATAGATAGATAGATAGAT A, 160.60 . AS_QUALapprox=|168|0;AS_VarDP=37|7|0;BaseQRankSum=0.345;DP=49;MQRankSum=0.000;QUALapprox=168;RAW_GT_COUNT=0,1,0;RAW_MQandDP=175009,49;ReadPosRankSum=-1.959;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:37,7,0:44:99:0|1:3315363_AGATAGATAGAATAGATAGATAGATAGAT_A:168,0,1482,279,1504,1784:3315363:21,16,5,2 +chrX 3315392 . G . . END=3315392 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,748 +chrX 3315393 . A . . END=3315393 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 3315394 . T . . END=3315396 GT:DP:GQ:MIN_DP:PL 0/0:60:0:60:0,0,1509 +chrX 3315397 . A . . END=3315397 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 3315398 . T . . END=3315398 GT:DP:GQ:MIN_DP:PL 0/0:60:6:60:0,6,1587 +chrX 3315399 . A . . END=3315399 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 3315400 . G . . END=3315400 GT:DP:GQ:MIN_DP:PL 0/0:57:0:57:0,0,1513 +chrX 3315401 . A . . END=3315467 GT:DP:GQ:MIN_DP:PL 0/0:59:38:58:0,38,1615 +chrX 3315468 . T C, 1234.64 . AS_QUALapprox=|1242|0;AS_VarDP=31|33|0;BaseQRankSum=0.136;DP=65;MQRankSum=-1.969;QUALapprox=1242;RAW_GT_COUNT=0,1,0;RAW_MQandDP=228838,65;ReadPosRankSum=0.325;VarDP=64 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:31,33,0:64:99:0|1:3315468_T_C:1242,0,1116,1335,1216,2550:3315468:15,16,20,13 +chrX 3315469 . T . . END=3315487 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 3315488 . A T, 1198.64 . AS_QUALapprox=|1206|0;AS_VarDP=32|31|0;BaseQRankSum=0.401;DP=64;MQRankSum=-1.770;QUALapprox=1206;RAW_GT_COUNT=0,1,0;RAW_MQandDP=225285,64;ReadPosRankSum=0.960;VarDP=63 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:32,31,0:63:99:0|1:3315468_T_C:1206,0,1205,1302,1298,2600:3315468:13,19,18,13 +chrX 3315489 . A . . END=3315530 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 3315531 . C T, 1057.64 . AS_QUALapprox=|1065|0;AS_VarDP=31|30|0;BaseQRankSum=-0.858;DP=62;MQRankSum=-1.771;QUALapprox=1065;RAW_GT_COUNT=0,1,0;RAW_MQandDP=218085,62;ReadPosRankSum=-0.289;VarDP=61 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:31,30,0:61:99:0|1:3315468_T_C:1065,0,1109,1158,1200,2358:3315468:11,20,16,14 +chrX 3315532 . G . . END=3315812 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,117,1800 +chrX 3315813 . T C, 741.64 . AS_QUALapprox=|749|0;AS_VarDP=32|29|0;BaseQRankSum=-1.665;DP=64;MQRankSum=0.000;QUALapprox=749;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=1.040;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:32,29,0:61:99:749,0,908,845,995,1840:17,15,13,16 +chrX 3315814 . C . . END=3316011 GT:DP:GQ:MIN_DP:PL 0/0:58:90:58:0,90,1350 +chrX 3316012 . TG T, 393.60 . AS_QUALapprox=|401|0;AS_VarDP=31|12|0;BaseQRankSum=0.341;DP=45;MQRankSum=-2.263;QUALapprox=401;RAW_GT_COUNT=0,1,0;RAW_MQandDP=156600,45;ReadPosRankSum=-0.312;VarDP=43 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:31,12,0:43:99:0|1:3316012_TG_T:401,0,1266,494,1302,1796:3316012:12,19,4,8 +chrX 3316014 . AGTATTTGTTCTGGATCCGAGTTTAGAGGG A, 375.60 . AS_QUALapprox=|383|0;AS_VarDP=37|12|0;BaseQRankSum=0.161;DP=51;MQRankSum=-2.476;QUALapprox=383;RAW_GT_COUNT=0,1,0;RAW_MQandDP=178200,51;ReadPosRankSum=-0.271;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:37,12,0:49:99:0|1:3316012_TG_T:383,0,1518,494,1554,2048:3316012:15,22,4,8 +chrX 3316044 . A . . END=3316055 GT:DP:GQ:MIN_DP:PL 0/0:42:91:42:0,91,1350 +chrX 3316056 . T C, 400.64 . AS_QUALapprox=|408|0;AS_VarDP=32|12|0;BaseQRankSum=-0.252;DP=44;MQRankSum=-3.357;QUALapprox=408;RAW_GT_COUNT=0,1,0;RAW_MQandDP=148300,44;ReadPosRankSum=0.306;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:32,12,0:44:99:0|1:3316012_TG_T:408,0,1308,504,1344,1848:3316012:13,19,4,8 +chrX 3316057 . G C, 400.64 . AS_QUALapprox=|408|0;AS_VarDP=32|12|0;BaseQRankSum=-2.365;DP=44;MQRankSum=-3.357;QUALapprox=408;RAW_GT_COUNT=0,1,0;RAW_MQandDP=148300,44;ReadPosRankSum=-0.072;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:32,12,0:44:99:0|1:3316012_TG_T:408,0,1308,504,1344,1848:3316012:13,19,4,8 +chrX 3316058 . C . . END=3316059 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,105,1575 +chrX 3316060 . GAAAAAGCACA G, 391.60 . AS_QUALapprox=|399|0;AS_VarDP=35|12|0;BaseQRankSum=-0.789;DP=47;MQRankSum=-3.505;QUALapprox=399;RAW_GT_COUNT=0,1,0;RAW_MQandDP=159100,47;ReadPosRankSum=-0.730;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:35,12,0:47:99:0|1:3316012_TG_T:399,0,1434,504,1470,1974:3316012:16,19,4,8 +chrX 3316071 . C . . END=3316071 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,111,1665 +chrX 3316072 . A ATT, 361.60 . AS_QUALapprox=|369|0;AS_VarDP=31|11|0;BaseQRankSum=0.612;DP=42;MQRankSum=-3.456;QUALapprox=369;RAW_GT_COUNT=0,1,0;RAW_MQandDP=141100,42;ReadPosRankSum=-0.529;VarDP=42 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:31,11,0:42:99:0|1:3316012_TG_T:369,0,1269,462,1302,1764:3316012:16,15,3,8 +chrX 3316073 . C T, 358.64 . AS_QUALapprox=|366|0;AS_VarDP=32|11|0;BaseQRankSum=0.993;DP=43;MQRankSum=-3.509;QUALapprox=366;RAW_GT_COUNT=0,1,0;RAW_MQandDP=144700,43;ReadPosRankSum=0.259;VarDP=43 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:32,11,0:43:99:0|1:3316012_TG_T:366,0,1311,462,1344,1806:3316012:17,15,3,8 +chrX 3316074 . T . . END=3316076 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,108,1620 +chrX 3316077 . G GA, 271.60 . AS_QUALapprox=|279|0;AS_VarDP=33|9|0;BaseQRankSum=-1.438;DP=42;MQRankSum=-3.944;QUALapprox=279;RAW_GT_COUNT=0,1,0;RAW_MQandDP=141100,42;ReadPosRankSum=0.126;VarDP=42 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:33,9,0:42:99:0|1:3316012_TG_T:279,0,1359,378,1386,1764:3316012:17,16,1,8 +chrX 3316078 . G GGT, 271.60 . AS_QUALapprox=|279|0;AS_VarDP=33|9|0;BaseQRankSum=-0.153;DP=42;MQRankSum=-3.944;QUALapprox=279;RAW_GT_COUNT=0,1,0;RAW_MQandDP=141100,42;ReadPosRankSum=-0.016;VarDP=42 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:33,9,0:42:99:0|1:3316012_TG_T:279,0,1359,378,1386,1764:3316012:17,16,1,8 +chrX 3316079 . C . . END=3316080 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,105,1575 +chrX 3316081 . G A, 274.64 . AS_QUALapprox=|282|0;AS_VarDP=32|9|0;BaseQRankSum=0.815;DP=41;MQRankSum=-3.887;QUALapprox=282;RAW_GT_COUNT=0,1,0;RAW_MQandDP=137500,41;ReadPosRankSum=-0.340;VarDP=41 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:32,9,0:41:99:0|1:3316012_TG_T:282,0,1317,378,1344,1722:3316012:17,15,1,8 +chrX 3316082 . G . . END=3316083 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,102,1530 +chrX 3316084 . C T, 277.64 . AS_QUALapprox=|285|0;AS_VarDP=31|9|0;BaseQRankSum=1.462;DP=40;MQRankSum=-3.828;QUALapprox=285;RAW_GT_COUNT=0,1,0;RAW_MQandDP=133900,40;ReadPosRankSum=-0.434;VarDP=40 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:31,9,0:40:99:0|1:3316012_TG_T:285,0,1275,378,1302,1680:3316012:16,15,1,8 +chrX 3316085 . GC G, 280.60 . AS_QUALapprox=|288|0;AS_VarDP=30|9|0;BaseQRankSum=1.322;DP=41;MQRankSum=-3.769;QUALapprox=288;RAW_GT_COUNT=0,1,0;RAW_MQandDP=134384,41;ReadPosRankSum=-0.417;VarDP=39 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:30,9,0:39:99:0|1:3316012_TG_T:288,0,1233,378,1260,1638:3316012:15,15,1,8 +chrX 3316087 . G . . END=3316087 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,102,1530 +chrX 3316088 . G . . END=3316093 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,1003 +chrX 3316094 . C . . END=3316094 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,105,1575 +chrX 3316095 . A . . END=3316095 GT:DP:GQ:MIN_DP:PL 0/0:39:13:39:0,13,1117 +chrX 3316096 . G . . END=3316098 GT:DP:GQ:MIN_DP:PL 0/0:37:76:37:0,76,1145 +chrX 3316099 . G . . END=3316099 GT:DP:GQ:MIN_DP:PL 0/0:37:17:37:0,17,1078 +chrX 3316100 . G . . END=3316170 GT:DP:GQ:MIN_DP:PL 0/0:38:66:38:0,66,1098 +chrX 3316171 . A G, 285.64 . AS_QUALapprox=|293|0;AS_VarDP=25|13|0;BaseQRankSum=-0.304;DP=42;MQRankSum=-5.452;QUALapprox=293;RAW_GT_COUNT=0,1,0;RAW_MQandDP=110384,42;ReadPosRankSum=-1.200;VarDP=38 GT:AD:DP:GQ:PL:SB 0/1:25,13,0:38:99:293,0,705,368,744,1112:13,12,8,5 +chrX 3316172 . G . . END=3316234 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,104,1365 +chrX 3316235 . AC A, 616.60 . AS_QUALapprox=|624|0;AS_VarDP=30|17|0;BaseQRankSum=1.779;DP=49;MQRankSum=-5.780;QUALapprox=624;RAW_GT_COUNT=0,1,0;RAW_MQandDP=129165,49;ReadPosRankSum=0.919;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:30,17,0:47:99:0|1:3316235_AC_A:624,0,1187,714,1238,1952:3316235:13,17,11,6 +chrX 3316237 . C . . END=3316238 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,120,1800 +chrX 3316239 . G T, 610.64 . AS_QUALapprox=|618|0;AS_VarDP=32|17|0;BaseQRankSum=0.132;DP=51;MQRankSum=-5.919;QUALapprox=618;RAW_GT_COUNT=0,1,0;RAW_MQandDP=136365,51;ReadPosRankSum=1.078;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:32,17,0:49:99:0|1:3316235_AC_A:618,0,1271,714,1322,2036:3316235:15,17,11,6 +chrX 3316240 . G . . END=3316240 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,120,1800 +chrX 3316241 . G T, 610.64 . AS_QUALapprox=|618|0;AS_VarDP=32|17|0;BaseQRankSum=0.503;DP=49;MQRankSum=-5.919;QUALapprox=618;RAW_GT_COUNT=0,1,0;RAW_MQandDP=134281,49;ReadPosRankSum=1.063;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:32,17,0:49:99:0|1:3316235_AC_A:618,0,1271,714,1322,2036:3316235:15,17,11,6 +chrX 3316242 . A . . END=3316244 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,120,1800 +chrX 3316245 . C G, 616.64 . AS_QUALapprox=|624|0;AS_VarDP=30|17|0;BaseQRankSum=1.915;DP=47;MQRankSum=-5.890;QUALapprox=624;RAW_GT_COUNT=0,1,0;RAW_MQandDP=128917,47;ReadPosRankSum=1.373;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:30,17,0:47:99:0|1:3316235_AC_A:624,0,1209,714,1260,1974:3316235:13,17,11,6 +chrX 3316246 . G . . END=3316248 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,120,1800 +chrX 3316249 . G A, 658.64 . AS_QUALapprox=|666|0;AS_VarDP=30|18|0;BaseQRankSum=0.190;DP=48;MQRankSum=-5.270;QUALapprox=666;RAW_GT_COUNT=0,1,0;RAW_MQandDP=134517,48;ReadPosRankSum=0.843;VarDP=48 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:30,18,0:48:99:0|1:3316235_AC_A:666,0,1206,756,1260,2016:3316235:13,17,12,6 +chrX 3316250 . C . . END=3316262 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,117,1575 +chrX 3316263 . A G, 706.64 . AS_QUALapprox=|714|0;AS_VarDP=28|19|0;BaseQRankSum=-0.438;DP=47;MQRankSum=-5.964;QUALapprox=714;RAW_GT_COUNT=0,1,0;RAW_MQandDP=136330,47;ReadPosRankSum=0.518;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,19,0:47:99:0|1:3316235_AC_A:714,0,1119,798,1176,1974:3316235:12,16,13,6 +chrX 3316264 . A . . END=3316267 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,113,1509 +chrX 3316268 . A C, 625.64 . AS_QUALapprox=|633|0;AS_VarDP=27|17|0;BaseQRankSum=-1.189;DP=44;MQRankSum=-5.846;QUALapprox=633;RAW_GT_COUNT=0,1,0;RAW_MQandDP=129881,44;ReadPosRankSum=0.497;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,17,0:44:99:0|1:3316235_AC_A:633,0,1083,714,1134,1848:3316235:11,16,12,5 +chrX 3316269 . G . . END=3316288 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,120,1800 +chrX 3316289 . G A, 757.64 . AS_QUALapprox=|765|0;AS_VarDP=25|20|0;BaseQRankSum=-1.609;DP=45;MQRankSum=-5.394;QUALapprox=765;RAW_GT_COUNT=0,1,0;RAW_MQandDP=132690,45;ReadPosRankSum=-0.545;VarDP=45 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,20,0:45:99:0|1:3316235_AC_A:765,0,990,840,1050,1890:3316235:10,15,13,7 +chrX 3316290 . G . . END=3316300 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,120,1800 +chrX 3316301 . G C, 670.64 . AS_QUALapprox=|678|0;AS_VarDP=26|18|0;BaseQRankSum=0.389;DP=44;MQRankSum=-5.020;QUALapprox=678;RAW_GT_COUNT=0,1,0;RAW_MQandDP=135090,44;ReadPosRankSum=-0.369;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,18,0:44:99:0|1:3316235_AC_A:678,0,1038,756,1092,1848:3316235:10,16,11,7 +chrX 3316302 . A . . END=3316304 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,120,1800 +chrX 3316305 . T C, 715.64 . AS_QUALapprox=|723|0;AS_VarDP=25|19|0;BaseQRankSum=1.495;DP=44;MQRankSum=-4.791;QUALapprox=723;RAW_GT_COUNT=0,1,0;RAW_MQandDP=135090,44;ReadPosRankSum=-0.308;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,19,0:44:99:0|1:3316235_AC_A:723,0,993,798,1050,1848:3316235:10,15,11,8 +chrX 3316306 . T . . END=3316314 GT:DP:GQ:MIN_DP:PL 0/0:43:96:43:0,96,1395 +chrX 3316315 . AAAATAAATAAATAAATAAAT A, 845.60 . AS_QUALapprox=|853|0;AS_VarDP=29|23|0;BaseQRankSum=0.828;DP=53;MQRankSum=-4.575;QUALapprox=853;RAW_GT_COUNT=0,1,0;RAW_MQandDP=167490,53;ReadPosRankSum=-1.320;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,23,0:52:99:0|1:3316235_AC_A:853,0,1138,940,1207,2147:3316235:13,16,15,8 +chrX 3316336 . A . . END=3316471 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,101,1265 +chrX 3316472 . C T, 656.64 . AS_QUALapprox=|664|0;AS_VarDP=26|24|0;BaseQRankSum=1.733;DP=55;MQRankSum=0.000;QUALapprox=664;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-0.146;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:26,24,0:50:99:664,0,668,742,740,1483:14,12,13,11 +chrX 3316473 . A . . END=3316496 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 3316497 . T TTAATAATAATAATAA, 629.60 . AS_QUALapprox=|637|0;AS_VarDP=25|17|0;BaseQRankSum=1.585;DP=55;MQRankSum=-1.164;QUALapprox=637;RAW_GT_COUNT=0,1,0;RAW_MQandDP=196336,55;ReadPosRankSum=-0.167;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:25,17,0:42:99:637,0,989,714,1041,1754:16,9,9,8 +chrX 3316498 . T . . END=3316557 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 3316558 . CT C, 2361.03 . AS_QUALapprox=|2375|0;AS_VarDP=0|59|0;DP=60;QUALapprox=2375;RAW_GT_COUNT=0,0,1;RAW_MQandDP=214336,60;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:2375,178,0,2375,178,2375:0,0,27,32 +chrX 3316560 . T . . END=3316579 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 3316580 . G A, 612.64 . AS_QUALapprox=|620|0;AS_VarDP=37|23|0;BaseQRankSum=3.189;DP=60;MQRankSum=0.000;QUALapprox=620;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=-0.023;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:37,23,0:60:99:620,0,961,730,1030,1760:16,21,10,13 +chrX 3316581 . A . . END=3317682 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,99,1459 +chrX 3317683 . C T, 602.64 . AS_QUALapprox=|610|0;AS_VarDP=32|24|0;BaseQRankSum=-0.837;DP=58;MQRankSum=0.000;QUALapprox=610;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-0.099;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:32,24,0:56:99:610,0,912,706,984,1689:8,24,10,14 +chrX 3317684 . C . . END=3318865 GT:DP:GQ:MIN_DP:PL 0/0:57:77:57:0,77,1226 +chrX 3318866 . TA T, 751.60 . AS_QUALapprox=|759|0;AS_VarDP=29|33|0;BaseQRankSum=-0.541;DP=70;MQRankSum=0.000;QUALapprox=759;RAW_GT_COUNT=0,1,0;RAW_MQandDP=252000,70;ReadPosRankSum=0.155;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:29,33,0:62:99:759,0,644,846,743,1589:14,15,18,15 +chrX 3318868 . A . . END=3318997 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,104,1776 +chrX 3318998 . C T, 847.64 . AS_QUALapprox=|855|0;AS_VarDP=22|32|0;BaseQRankSum=0.564;DP=57;MQRankSum=-1.157;QUALapprox=855;RAW_GT_COUNT=0,1,0;RAW_MQandDP=200677,57;ReadPosRankSum=-0.792;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:22,32,0:54:99:855,0,518,921,614,1535:8,14,19,13 +chrX 3318999 . G . . END=3319043 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 3319044 . T G, 789.64 . AS_QUALapprox=|797|0;AS_VarDP=23|29|0;BaseQRankSum=-0.582;DP=53;MQRankSum=-1.244;QUALapprox=797;RAW_GT_COUNT=0,1,0;RAW_MQandDP=186277,53;ReadPosRankSum=1.235;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:23,29,0:52:99:797,0,622,866,709,1575:8,15,14,15 +chrX 3319045 . G . . END=3319054 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 3319055 . G T, 1098.64 . AS_QUALapprox=|1106|0;AS_VarDP=23|28|0;BaseQRankSum=-1.813;DP=51;MQRankSum=-1.266;QUALapprox=1106;RAW_GT_COUNT=0,1,0;RAW_MQandDP=179077,51;ReadPosRankSum=1.066;VarDP=51 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,28,0:51:99:0|1:3319055_G_T:1106,0,881,1176,966,2141:3319055:8,15,12,16 +chrX 3319056 . G C, 1098.64 . AS_QUALapprox=|1106|0;AS_VarDP=23|28|0;BaseQRankSum=-1.746;DP=51;MQRankSum=-1.266;QUALapprox=1106;RAW_GT_COUNT=0,1,0;RAW_MQandDP=179077,51;ReadPosRankSum=1.250;VarDP=51 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,28,0:51:99:0|1:3319055_G_T:1106,0,881,1176,966,2141:3319055:8,15,12,16 +chrX 3319057 . C . . END=3319062 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,119,1559 +chrX 3319063 . A G, 1101.64 . AS_QUALapprox=|1109|0;AS_VarDP=22|28|0;BaseQRankSum=-1.208;DP=50;MQRankSum=-1.238;QUALapprox=1109;RAW_GT_COUNT=0,1,0;RAW_MQandDP=175477,50;ReadPosRankSum=0.667;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,28,0:50:99:0|1:3319055_G_T:1109,0,839,1176,924,2099:3319055:8,14,12,16 +chrX 3319064 . T . . END=3319072 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 3319073 . A T, 1112.64 . AS_QUALapprox=|1120|0;AS_VarDP=22|29|0;BaseQRankSum=-1.775;DP=52;MQRankSum=-1.216;QUALapprox=1120;RAW_GT_COUNT=0,1,0;RAW_MQandDP=182677,52;ReadPosRankSum=0.352;VarDP=51 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,29,0:51:99:0|1:3319055_G_T:1120,0,816,1186,903,2089:3319055:6,16,14,15 +chrX 3319074 . G . . END=3319185 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 3319186 . T C, 976.64 . AS_QUALapprox=|984|0;AS_VarDP=21|39|0;BaseQRankSum=-1.168;DP=62;MQRankSum=0.000;QUALapprox=984;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=0.178;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:21,39,0:60:99:984,0,496,1047,612,1659:10,11,18,21 +chrX 3319187 . G . . END=3319542 GT:DP:GQ:MIN_DP:PL 0/0:58:91:58:0,91,1440 +chrX 3319543 . C T, 827.64 . AS_QUALapprox=|835|0;AS_VarDP=27|30|0;BaseQRankSum=1.292;DP=61;MQRankSum=0.000;QUALapprox=835;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-1.703;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:27,30,0:57:99:835,0,718,916,807,1724:13,14,15,15 +chrX 3319544 . A . . END=3319682 GT:DP:GQ:MIN_DP:PL 0/0:73:99:73:0,120,1800 +chrX 3319683 . G A, 834.64 . AS_QUALapprox=|842|0;AS_VarDP=44|34|0;BaseQRankSum=0.551;DP=80;MQRankSum=0.000;QUALapprox=842;RAW_GT_COUNT=0,1,0;RAW_MQandDP=288000,80;ReadPosRankSum=1.043;VarDP=78 GT:AD:DP:GQ:PL:SB 0/1:44,34,0:78:99:842,0,1125,973,1227,2200:24,20,17,17 +chrX 3319684 . G . . END=3320125 GT:DP:GQ:MIN_DP:PL 0/0:53:72:53:0,72,1066 +chrX 3320126 . T G, 776.64 . AS_QUALapprox=|784|0;AS_VarDP=18|30|0;BaseQRankSum=-0.662;DP=50;MQRankSum=0.000;QUALapprox=784;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=-0.554;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:18,30,0:48:99:784,0,453,838,542,1380:10,8,14,16 +chrX 3320127 . G . . END=3320691 GT:DP:GQ:MIN_DP:PL 0/0:53:90:53:0,90,1276 +chrX 3320692 . G A, 506.64 . AS_QUALapprox=|514|0;AS_VarDP=34|21|0;BaseQRankSum=-0.538;DP=55;MQRankSum=0.000;QUALapprox=514;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-2.141;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:34,21,0:55:99:514,0,956,616,1019,1636:14,20,11,10 +chrX 3320693 . A . . END=3321503 GT:DP:GQ:MIN_DP:PL 0/0:55:77:55:0,77,1153 +chrX 3321504 . C T, 661.64 . AS_QUALapprox=|669|0;AS_VarDP=25|25|0;BaseQRankSum=-0.748;DP=51;MQRankSum=0.000;QUALapprox=669;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-0.029;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:25,25,0:50:99:669,0,688,744,764,1507:16,9,11,14 +chrX 3321505 . C . . END=3322301 GT:DP:GQ:MIN_DP:PL 0/0:50:69:50:0,69,1144 +chrX 3322302 . G A, 672.64 . AS_QUALapprox=|680|0;AS_VarDP=21|24|0;BaseQRankSum=3.246;DP=46;MQRankSum=0.000;QUALapprox=680;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=-0.819;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:21,24,0:45:99:680,0,470,742,542,1284:11,10,11,13 +chrX 3322303 . C . . END=3323008 GT:DP:GQ:MIN_DP:PL 0/0:50:55:50:0,55,1046 +chrX 3323009 . G A, 906.64 . AS_QUALapprox=|914|0;AS_VarDP=21|33|0;BaseQRankSum=0.993;DP=58;MQRankSum=0.000;QUALapprox=914;RAW_GT_COUNT=0,1,0;RAW_MQandDP=207049,58;ReadPosRankSum=-0.763;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:21,33,0:54:99:914,0,497,977,597,1574:7,14,19,14 +chrX 3323010 . G . . END=3323214 GT:DP:GQ:MIN_DP:PL 0/0:49:90:49:0,90,1132 +chrX 3323215 . T C, 655.64 . AS_QUALapprox=|663|0;AS_VarDP=16|24|0;BaseQRankSum=0.324;DP=40;MQRankSum=0.000;QUALapprox=663;RAW_GT_COUNT=0,1,0;RAW_MQandDP=144000,40;ReadPosRankSum=1.285;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:16,24,0:40:99:663,0,396,712,468,1180:8,8,11,13 +chrX 3323216 . A . . END=3323242 GT:DP:GQ:MIN_DP:PL 0/0:40:95:40:0,95,1241 +chrX 3323243 . A G, 754.64 . AS_QUALapprox=|762|0;AS_VarDP=14|28|0;BaseQRankSum=-0.805;DP=44;MQRankSum=0.000;QUALapprox=762;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=0.067;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:14,28,0:42:99:762,0,341,804,424,1229:9,5,14,14 +chrX 3323244 . C . . END=3323275 GT:DP:GQ:MIN_DP:PL 0/0:39:76:39:0,76,1166 +chrX 3323276 . T C, 673.64 . AS_QUALapprox=|681|0;AS_VarDP=16|25|0;BaseQRankSum=-1.198;DP=42;MQRankSum=0.000;QUALapprox=681;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151200,42;ReadPosRankSum=0.334;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:16,25,0:41:99:681,0,423,729,498,1227:13,3,12,13 +chrX 3323277 . G . . END=3323749 GT:DP:GQ:MIN_DP:PL 0/0:61:92:61:0,92,1380 +chrX 3323750 . G A, 851.64 . AS_QUALapprox=|859|0;AS_VarDP=18|30|0;BaseQRankSum=1.244;DP=50;MQRankSum=0.000;QUALapprox=859;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176800,50;ReadPosRankSum=1.950;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:18,30,0:48:99:859,0,431,913,522,1434:10,8,14,16 +chrX 3323751 . T . . END=3325324 GT:DP:GQ:MIN_DP:PL 0/0:57:86:57:0,86,1315 +chrX 3325325 . A G, 646.64 . AS_QUALapprox=|654|0;AS_VarDP=34|26|0;BaseQRankSum=0.524;DP=61;MQRankSum=0.000;QUALapprox=654;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=0.403;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:34,26,0:60:99:654,0,877,756,955,1710:18,16,11,15 +chrX 3325326 . T . . END=3325467 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,99,1420 +chrX 3325468 . ATC A, 613.60 . AS_QUALapprox=|621|0;AS_VarDP=31|17|0;BaseQRankSum=0.774;DP=49;MQRankSum=0.000;QUALapprox=621;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=0.712;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:31,17,0:48:99:621,0,1243,714,1294,2008:12,19,9,8 +chrX 3325471 . T . . END=3325701 GT:DP:GQ:MIN_DP:PL 0/0:45:21:42:0,21,1100 +chrX 3325702 . C . . END=3325703 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,965 +chrX 3325704 . C . . END=3325706 GT:DP:GQ:MIN_DP:PL 0/0:45:25:43:0,25,1165 +chrX 3325707 . G . . END=3325707 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,1061 +chrX 3325708 . A . . END=3325708 GT:DP:GQ:MIN_DP:PL 0/0:44:28:44:0,28,1220 +chrX 3325709 . A . . END=3325711 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,1067 +chrX 3325712 . T . . END=3325712 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,108,1620 +chrX 3325713 . A . . END=3325716 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,928 +chrX 3325717 . T . . END=3325717 GT:DP:GQ:MIN_DP:PL 0/0:42:22:42:0,22,1161 +chrX 3325718 . C . . END=3325721 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,816 +chrX 3325722 . T . . END=3325722 GT:DP:GQ:MIN_DP:PL 0/0:47:37:47:0,37,1305 +chrX 3325723 . A . . END=3325723 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,1256 +chrX 3325724 . A . . END=3325724 GT:DP:GQ:MIN_DP:PL 0/0:46:69:46:0,69,1390 +chrX 3325725 . A . . END=3325725 GT:DP:GQ:MIN_DP:PL 0/0:50:0:50:0,0,1310 +chrX 3325726 . A . . END=3325726 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,106,1474 +chrX 3325727 . G . . END=3325728 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,924 +chrX 3325729 . A . . END=3325729 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,106,1454 +chrX 3325730 . A . . END=3325731 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,886 +chrX 3325732 . A . . END=3325732 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,100,1373 +chrX 3325733 . A . . END=3325736 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,849 +chrX 3325737 . T . . END=3325737 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,120,1800 +chrX 3325738 . T . . END=3325742 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,671 +chrX 3325743 . T . . END=3325743 GT:DP:GQ:MIN_DP:PL 0/0:45:66:45:0,66,1375 +chrX 3325744 . G . . END=3325744 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,555 +chrX 3325745 . T . . END=3325746 GT:DP:GQ:MIN_DP:PL 0/0:49:54:49:0,54,1391 +chrX 3325747 . T . . END=3325753 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,586 +chrX 3325754 . A . . END=3325757 GT:DP:GQ:MIN_DP:PL 0/0:50:24:46:0,24,1340 +chrX 3325758 . T . . END=3325758 GT:DP:GQ:MIN_DP:PL 0/0:52:0:52:0,0,537 +chrX 3325759 . T . . END=3325759 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 3325760 . A . . END=3325762 GT:DP:GQ:MIN_DP:PL 0/0:50:0:50:0,0,417 +chrX 3325763 . T . . END=3325763 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 3325764 . T . . END=3325766 GT:DP:GQ:MIN_DP:PL 0/0:50:0:50:0,0,417 +chrX 3325767 . T . . END=3325769 GT:DP:GQ:MIN_DP:PL 0/0:55:33:54:0,33,1539 +chrX 3325770 . G A, 486.64 . AS_QUALapprox=|494|0;AS_VarDP=17|18|0;BaseQRankSum=1.082;DP=39;MQRankSum=-0.915;QUALapprox=494;RAW_GT_COUNT=0,1,0;RAW_MQandDP=137329,39;ReadPosRankSum=-0.446;VarDP=35 GT:AD:DP:GQ:PL:SB 0/1:17,18,0:35:99:494,0,415,544,469,1014:8,9,8,10 +chrX 3325771 . T . . END=3325804 GT:DP:GQ:MIN_DP:PL 0/0:43:95:43:0,95,1142 +chrX 3325805 . C CATATATTTATAAATAAATATATAATAATATATTTATAAATAAATATATAATA, 1652.60 . AS_QUALapprox=|1660|0;AS_VarDP=15|41|0;BaseQRankSum=0.374;DP=71;MQRankSum=-0.834;QUALapprox=1660;RAW_GT_COUNT=0,1,0;RAW_MQandDP=251845,71;ReadPosRankSum=-3.596;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:15,41,0:56:99:1660,0,508,1710,631,2341:7,8,27,14 +chrX 3325806 . A . . END=3325841 GT:DP:GQ:MIN_DP:PL 0/0:93:99:93:0,120,1800 +chrX 3325842 . T . . END=3325843 GT:DP:GQ:MIN_DP:PL 0/0:79:0:79:0,0,957 +chrX 3325844 . A . . END=3325850 GT:DP:GQ:MIN_DP:PL 0/0:89:99:89:0,120,1800 +chrX 3325851 . A . . END=3325852 GT:DP:GQ:MIN_DP:PL 0/0:78:0:78:0,0,1727 +chrX 3325853 . T . . END=3325853 GT:DP:GQ:MIN_DP:PL 0/0:90:99:90:0,120,1800 +chrX 3325854 . T . . END=3325854 GT:DP:GQ:MIN_DP:PL 0/0:81:0:81:0,0,1932 +chrX 3325855 . A . . END=3325859 GT:DP:GQ:MIN_DP:PL 0/0:89:99:89:0,120,1800 +chrX 3325860 . T . . END=3325864 GT:DP:GQ:MIN_DP:PL 0/0:79:0:79:0,0,1811 +chrX 3325865 . T . . END=3325865 GT:DP:GQ:MIN_DP:PL 0/0:88:99:88:0,120,1800 +chrX 3325866 . T . . END=3325866 GT:DP:GQ:MIN_DP:PL 0/0:81:0:81:0,0,1881 +chrX 3325867 . T . . END=3325868 GT:DP:GQ:MIN_DP:PL 0/0:89:99:89:0,120,1800 +chrX 3325869 . T . . END=3325869 GT:DP:GQ:MIN_DP:PL 0/0:84:0:84:0,0,2006 +chrX 3325870 . A . . END=3325870 GT:DP:GQ:MIN_DP:PL 0/0:91:99:91:0,120,1800 +chrX 3325871 . A . . END=3325872 GT:DP:GQ:MIN_DP:PL 0/0:84:0:84:0,0,1964 +chrX 3325873 . A . . END=3325873 GT:DP:GQ:MIN_DP:PL 0/0:89:99:89:0,120,1800 +chrX 3325874 . T . . END=3325877 GT:DP:GQ:MIN_DP:PL 0/0:81:0:81:0,0,1961 +chrX 3325878 . A . . END=3325879 GT:DP:GQ:MIN_DP:PL 0/0:85:99:85:0,120,1800 +chrX 3325880 . T . . END=3325883 GT:DP:GQ:MIN_DP:PL 0/0:82:0:82:0,0,2104 +chrX 3325884 . A . . END=3325884 GT:DP:GQ:MIN_DP:PL 0/0:81:99:81:0,120,1800 +chrX 3325885 . A . . END=3325885 GT:DP:GQ:MIN_DP:PL 0/0:81:0:81:0,0,2068 +chrX 3325886 . T . . END=3325890 GT:DP:GQ:MIN_DP:PL 0/0:78:22:77:0,22,1800 +chrX 3325891 . A . . END=3325892 GT:DP:GQ:MIN_DP:PL 0/0:78:0:78:0,0,1871 +chrX 3325893 . T . . END=3325895 GT:DP:GQ:MIN_DP:PL 0/0:79:50:79:0,50,1800 +chrX 3325896 . T . . END=3325897 GT:DP:GQ:MIN_DP:PL 0/0:79:0:79:0,0,2149 +chrX 3325898 . A . . END=3325898 GT:DP:GQ:MIN_DP:PL 0/0:77:99:77:0,120,1800 +chrX 3325899 . T . . END=3325900 GT:DP:GQ:MIN_DP:PL 0/0:74:0:74:0,0,1373 +chrX 3325901 . T . . END=3325910 GT:DP:GQ:MIN_DP:PL 0/0:78:23:77:0,23,1800 +chrX 3325911 . A . . END=3325911 GT:DP:GQ:MIN_DP:PL 0/0:75:0:75:0,0,1951 +chrX 3325912 . A . . END=3326003 GT:DP:GQ:MIN_DP:PL 0/0:77:24:57:0,24,1587 +chrX 3326004 . T C, 1046.64 . AS_QUALapprox=|1054|0;AS_VarDP=25|29|0;BaseQRankSum=-1.075;DP=56;MQRankSum=0.159;QUALapprox=1054;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198037,56;ReadPosRankSum=-0.537;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,29,0:54:99:0|1:3326004_T_C:1054,0,870,1127,957,2084:3326004:9,16,11,18 +chrX 3326005 . T . . END=3326024 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 3326025 . T TTA, 1224.60 . AS_QUALapprox=|1232|0;AS_VarDP=23|33|0;BaseQRankSum=1.201;DP=60;MQRankSum=-0.799;QUALapprox=1232;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208200,60;ReadPosRankSum=-1.341;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,33,0:56:99:0|1:3326004_T_C:1232,0,831,1302,931,2232:3326004:8,15,15,18 +chrX 3326026 . T . . END=3326091 GT:DP:GQ:MIN_DP:PL 0/0:60:21:51:0,21,1436 +chrX 3326092 . T . . END=3326093 GT:DP:GQ:MIN_DP:PL 0/0:63:1:63:0,1,1631 +chrX 3326094 . T . . END=3326097 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 3326098 . T . . END=3326099 GT:DP:GQ:MIN_DP:PL 0/0:65:0:65:0,0,1543 +chrX 3326100 . T . . END=3326100 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,100,2015 +chrX 3326101 . A . . END=3326104 GT:DP:GQ:MIN_DP:PL 0/0:65:0:65:0,0,1104 +chrX 3326105 . A . . END=3326107 GT:DP:GQ:MIN_DP:PL 0/0:69:65:69:0,65,1800 +chrX 3326108 . A . . END=3326108 GT:DP:GQ:MIN_DP:PL 0/0:61:0:61:0,0,1195 +chrX 3326109 . A . . END=3326111 GT:DP:GQ:MIN_DP:PL 0/0:68:21:66:0,21,1740 +chrX 3326112 . C . . END=3326113 GT:DP:GQ:MIN_DP:PL 0/0:66:0:66:0,0,920 +chrX 3326114 . T . . END=3326115 GT:DP:GQ:MIN_DP:PL 0/0:73:84:73:0,84,1800 +chrX 3326116 . T . . END=3326118 GT:DP:GQ:MIN_DP:PL 0/0:75:0:75:0,0,1443 +chrX 3326119 . A . . END=3326119 GT:DP:GQ:MIN_DP:PL 0/0:80:99:80:0,120,1800 +chrX 3326120 . T . . END=3326132 GT:DP:GQ:MIN_DP:PL 0/0:75:0:75:0,0,804 +chrX 3326133 . A . . END=3326133 GT:DP:GQ:MIN_DP:PL 0/0:78:46:78:0,46,2133 +chrX 3326134 . T . . END=3326139 GT:DP:GQ:MIN_DP:PL 0/0:81:0:81:0,0,203 +chrX 3326140 . A . . END=3326140 GT:DP:GQ:MIN_DP:PL 0/0:86:50:86:0,50,2391 +chrX 3326141 . T . . END=3326142 GT:DP:GQ:MIN_DP:PL 0/0:84:0:84:0,0,178 +chrX 3326143 . T . . END=3326143 GT:DP:GQ:MIN_DP:PL 0/0:86:70:86:0,70,2381 +chrX 3326144 . G . . END=3326144 GT:DP:GQ:MIN_DP:PL 0/0:79:0:79:0,0,0 +chrX 3326145 . T . . END=3326146 GT:DP:GQ:MIN_DP:PL 0/0:89:42:89:0,42,1800 +chrX 3326147 . A . . END=3326149 GT:DP:GQ:MIN_DP:PL 0/0:88:0:88:0,0,1855 +chrX 3326150 . T . . END=3326154 GT:DP:GQ:MIN_DP:PL 0/0:88:41:88:0,41,1800 +chrX 3326155 . T . . END=3326155 GT:DP:GQ:MIN_DP:PL 0/0:91:0:91:0,0,789 +chrX 3326156 . T . . END=3326157 GT:DP:GQ:MIN_DP:PL 0/0:98:87:98:0,87,1800 +chrX 3326158 . A . . END=3326158 GT:DP:GQ:MIN_DP:PL 0/0:96:0:96:0,0,1886 +chrX 3326159 . T . . END=3326167 GT:DP:GQ:MIN_DP:PL 0/0:101:67:101:0,67,1800 +chrX 3326168 . T . . END=3326168 GT:DP:GQ:MIN_DP:PL 0/0:91:0:91:0,0,0 +chrX 3326169 . T . . END=3326181 GT:DP:GQ:MIN_DP:PL 0/0:102:99:102:0,120,1800 +chrX 3326182 . T . . END=3326182 GT:DP:GQ:MIN_DP:PL 0/0:89:0:89:0,0,2218 +chrX 3326183 . T . . END=3326194 GT:DP:GQ:MIN_DP:PL 0/0:101:99:101:0,120,1800 +chrX 3326195 . G . . END=3326195 GT:DP:GQ:MIN_DP:PL 0/0:88:0:88:0,0,1059 +chrX 3326196 . T . . END=3326208 GT:DP:GQ:MIN_DP:PL 0/0:90:99:90:0,111,1665 +chrX 3326209 . T . . END=3326209 GT:DP:GQ:MIN_DP:PL 0/0:82:0:82:0,0,1689 +chrX 3326210 . T . . END=3326214 GT:DP:GQ:MIN_DP:PL 0/0:86:99:86:0,117,1755 +chrX 3326215 . T . . END=3326216 GT:DP:GQ:MIN_DP:PL 0/0:78:0:78:0,0,581 +chrX 3326217 . T . . END=3326217 GT:DP:GQ:MIN_DP:PL 0/0:83:99:83:0,117,1755 +chrX 3326218 . T . . END=3326230 GT:DP:GQ:MIN_DP:PL 0/0:76:0:76:0,0,319 +chrX 3326231 . T . . END=3326231 GT:DP:GQ:MIN_DP:PL 0/0:77:99:77:0,117,1755 +chrX 3326232 . A . . END=3326237 GT:DP:GQ:MIN_DP:PL 0/0:68:0:68:0,0,659 +chrX 3326238 . T . . END=3326238 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,114,1710 +chrX 3326239 . C . . END=3326243 GT:DP:GQ:MIN_DP:PL 0/0:62:0:62:0,0,416 +chrX 3326244 . T . . END=3326244 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,111,1665 +chrX 3326245 . G . . END=3326245 GT:DP:GQ:MIN_DP:PL 0/0:59:0:59:0,0,590 +chrX 3326246 . T . . END=3326246 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,111,1665 +chrX 3326247 . A . . END=3326257 GT:DP:GQ:MIN_DP:PL 0/0:58:0:58:0,0,0 +chrX 3326258 . T . . END=3326258 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,114,1710 +chrX 3326259 . A . . END=3326272 GT:DP:GQ:MIN_DP:PL 0/0:55:0:55:0,0,599 +chrX 3326273 . T . . END=3326273 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 3326274 . T . . END=3326277 GT:DP:GQ:MIN_DP:PL 0/0:55:0:55:0,0,1036 +chrX 3326278 . A . . END=3326278 GT:DP:GQ:MIN_DP:PL 0/0:51:84:51:0,84,1533 +chrX 3326279 . C . . END=3326285 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,797 +chrX 3326286 . T . . END=3326286 GT:DP:GQ:MIN_DP:PL 0/0:50:46:50:0,46,1419 +chrX 3326287 . A . . END=3326291 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,1204 +chrX 3326292 . T . . END=3326295 GT:DP:GQ:MIN_DP:PL 0/0:48:35:47:0,35,1330 +chrX 3326296 . C . . END=3326296 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,0 +chrX 3326297 . A . . END=3326453 GT:DP:GQ:MIN_DP:PL 0/0:57:76:57:0,76,1359 +chrX 3326454 . G A, 923.64 . AS_QUALapprox=|931|0;AS_VarDP=34|28|0;BaseQRankSum=1.578;DP=62;MQRankSum=0.000;QUALapprox=931;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=0.145;VarDP=62 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:34,28,0:62:99:0|1:3326454_G_A:931,0,1176,1033,1259,2292:3326454:15,19,13,15 +chrX 3326455 . T . . END=3326485 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 3326486 . T C, 1149.64 . AS_QUALapprox=|1157|0;AS_VarDP=27|30|0;BaseQRankSum=-2.786;DP=57;MQRankSum=-0.914;QUALapprox=1157;RAW_GT_COUNT=0,1,0;RAW_MQandDP=204001,57;ReadPosRankSum=-1.079;VarDP=57 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,30,0:57:99:0|1:3326454_G_A:1157,0,1012,1238,1102,2340:3326454:10,17,15,15 +chrX 3326487 . G . . END=3326527 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,120,1800 +chrX 3326528 . C A, 958.64 . AS_QUALapprox=|966|0;AS_VarDP=24|27|0;BaseQRankSum=1.550;DP=52;MQRankSum=-0.904;QUALapprox=966;RAW_GT_COUNT=0,1,0;RAW_MQandDP=186001,52;ReadPosRankSum=0.146;VarDP=51 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,27,0:51:99:0|1:3326454_G_A:966,0,774,1037,855,1892:3326454:12,12,16,11 +chrX 3326529 . A . . END=3327124 GT:DP:GQ:MIN_DP:PL 0/0:50:77:50:0,77,1186 +chrX 3327125 . G A, 461.64 . AS_QUALapprox=|469|0;AS_VarDP=32|20|0;BaseQRankSum=0.645;DP=54;MQRankSum=0.000;QUALapprox=469;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=0.038;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:32,20,0:52:99:469,0,857,566,916,1482:16,16,8,12 +chrX 3327126 . T . . END=3327162 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 3327163 . A G, 753.64 . AS_QUALapprox=|761|0;AS_VarDP=31|28|0;BaseQRankSum=-0.560;DP=60;MQRankSum=0.000;QUALapprox=761;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=0.934;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:31,28,0:59:99:761,0,860,854,943,1798:12,19,11,17 +chrX 3327164 . T . . END=3327213 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 3327214 . GC G, 883.60 . AS_QUALapprox=|891|0;AS_VarDP=30|30|0;BaseQRankSum=1.284;DP=64;MQRankSum=0.000;QUALapprox=891;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=0.174;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:30,30,0:60:99:891,0,857,981,948,1928:16,14,15,15 +chrX 3327216 . C . . END=3327720 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,101,1433 +chrX 3327721 . A G, 708.64 . AS_QUALapprox=|716|0;AS_VarDP=23|26|0;BaseQRankSum=-0.688;DP=51;MQRankSum=0.000;QUALapprox=716;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=2.616;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:23,26,0:49:99:716,0,632,786,710,1496:11,12,12,14 +chrX 3327722 . C . . END=3328792 GT:DP:GQ:MIN_DP:PL 0/0:48:46:48:0,46,1001 +chrX 3328793 . T . . END=3328793 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,662 +chrX 3328794 . G . . END=3328898 GT:DP:GQ:MIN_DP:PL 0/0:33:20:30:0,20,758 +chrX 3328899 . T . . END=3328899 GT:DP:GQ:MIN_DP:PL 0/0:24:0:24:0,0,556 +chrX 3328900 . G . . END=3329024 GT:DP:GQ:MIN_DP:PL 0/0:33:23:26:0,23,675 +chrX 3329025 . T G, 7.60 . AS_QUALapprox=|15|0;AS_VarDP=20|5|0;BaseQRankSum=-2.230;DP=28;MQRankSum=0.600;QUALapprox=15;RAW_GT_COUNT=0,1,0;RAW_MQandDP=99504,28;ReadPosRankSum=0.918;VarDP=25 GT:AD:DP:GQ:PL:SB 0/1:20,5,0:25:15:15,0,522,74,535,610:13,7,4,1 +chrX 3329026 . G . . END=3329060 GT:DP:GQ:MIN_DP:PL 0/0:37:65:37:0,65,958 +chrX 3329061 . C . . END=3329061 GT:DP:GQ:MIN_DP:PL 0/0:31:19:31:0,19,819 +chrX 3329062 . G . . END=3329092 GT:DP:GQ:MIN_DP:PL 0/0:36:38:36:0,38,992 +chrX 3329093 . T . . END=3329093 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,838 +chrX 3329094 . G . . END=3329116 GT:DP:GQ:MIN_DP:PL 0/0:39:25:33:0,25,878 +chrX 3329117 . T . . END=3329117 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,787 +chrX 3329118 . A . . END=3329152 GT:DP:GQ:MIN_DP:PL 0/0:42:29:38:0,29,972 +chrX 3329153 . AGAAGGAAG A, 379.60 . AS_QUALapprox=|387|0;AS_VarDP=18|11|0;BaseQRankSum=-0.873;DP=42;MQRankSum=-1.208;QUALapprox=387;RAW_GT_COUNT=0,1,0;RAW_MQandDP=150849,42;ReadPosRankSum=0.657;VarDP=29 GT:AD:DP:GQ:PL:SB 0/1:18,11,0:29:99:387,0,675,441,708,1149:13,5,10,1 +chrX 3329162 . G . . END=3329202 GT:DP:GQ:MIN_DP:PL 0/0:36:54:33:0,54,1011 +chrX 3329203 . T A, 431.64 . AS_QUALapprox=|439|0;AS_VarDP=12|17|0;BaseQRankSum=1.475;DP=35;MQRankSum=0.000;QUALapprox=439;RAW_GT_COUNT=0,1,0;RAW_MQandDP=126000,35;ReadPosRankSum=-2.304;VarDP=29 GT:AD:DP:GQ:PL:SB 0/1:12,17,0:29:99:439,0,256,474,306,781:8,4,15,2 +chrX 3329204 . G . . END=3329236 GT:DP:GQ:MIN_DP:PL 0/0:34:55:34:0,55,743 +chrX 3329237 . T G, 13.63 . AS_QUALapprox=|21|0;AS_VarDP=31|6|0;BaseQRankSum=-0.404;DP=39;MQRankSum=0.000;QUALapprox=21;RAW_GT_COUNT=0,1,0;RAW_MQandDP=140400,39;ReadPosRankSum=1.967;VarDP=37 GT:AD:DP:GQ:PL:SB 0/1:31,6,0:37:21:21,0,806,111,823,934:17,14,1,5 +chrX 3329238 . A . . END=3329318 GT:DP:GQ:MIN_DP:PL 0/0:36:50:36:0,50,793 +chrX 3329319 . A AGAAGGAAGGAATGAAGGAAAAAAGAAG, 757.60 . AS_QUALapprox=|765|0;AS_VarDP=13|20|0;BaseQRankSum=-0.061;DP=44;MQRankSum=-1.113;QUALapprox=765;RAW_GT_COUNT=0,1,0;RAW_MQandDP=156420,44;ReadPosRankSum=-0.591;VarDP=33 GT:AD:DP:GQ:PL:SB 0/1:13,20,0:33:99:765,0,487,806,548,1353:6,7,11,9 +chrX 3329320 . G . . END=3329330 GT:DP:GQ:MIN_DP:PL 0/0:46:60:46:0,60,900 +chrX 3329331 . G . . END=3329331 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,471 +chrX 3329332 . G . . END=3329333 GT:DP:GQ:MIN_DP:PL 0/0:38:60:38:0,60,900 +chrX 3329334 . G . . END=3329335 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,348 +chrX 3329336 . G . . END=3329338 GT:DP:GQ:MIN_DP:PL 0/0:36:66:36:0,66,990 +chrX 3329339 . G . . END=3329340 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,446 +chrX 3329341 . A . . END=3329345 GT:DP:GQ:MIN_DP:PL 0/0:33:63:33:0,63,945 +chrX 3329346 . A . . END=3329346 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,595 +chrX 3329347 . G . . END=3329347 GT:DP:GQ:MIN_DP:PL 0/0:34:75:34:0,75,1125 +chrX 3329348 . G . . END=3329348 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,544 +chrX 3329349 . A . . END=3329349 GT:DP:GQ:MIN_DP:PL 0/0:34:75:34:0,75,1125 +chrX 3329350 . A . . END=3329352 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,575 +chrX 3329353 . A . . END=3329353 GT:DP:GQ:MIN_DP:PL 0/0:32:75:32:0,75,1125 +chrX 3329354 . A . . END=3329354 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,675 +chrX 3329355 . G . . END=3329355 GT:DP:GQ:MIN_DP:PL 0/0:32:71:32:0,71,962 +chrX 3329356 . G . . END=3329356 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,769 +chrX 3329357 . A . . END=3329359 GT:DP:GQ:MIN_DP:PL 0/0:33:74:33:0,74,1057 +chrX 3329360 . G . . END=3329361 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,759 +chrX 3329362 . A . . END=3329363 GT:DP:GQ:MIN_DP:PL 0/0:34:78:34:0,78,1170 +chrX 3329364 . G . . END=3329364 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,833 +chrX 3329365 . A . . END=3329403 GT:DP:GQ:MIN_DP:PL 0/0:30:23:28:0,23,770 +chrX 3329404 . A . . END=3329404 GT:DP:GQ:MIN_DP:PL 0/0:29:17:29:0,17,808 +chrX 3329405 . A . . END=3329412 GT:DP:GQ:MIN_DP:PL 0/0:30:20:28:0,20,805 +chrX 3329413 . A . . END=3329413 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,734 +chrX 3329414 . A . . END=3329427 GT:DP:GQ:MIN_DP:PL 0/0:39:23:35:0,23,967 +chrX 3329428 . G . . END=3329431 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,1036 +chrX 3329432 . G . . END=3329434 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 3329435 . A . . END=3329436 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,924 +chrX 3329437 . G . . END=3329442 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,107,1631 +chrX 3329443 . G . . END=3329443 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,778 +chrX 3329444 . G . . END=3329453 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 3329454 . A AAGATGAAGGAAGGGGAGAGAAGGAAGGAAGGAAGGC, 575.60 . AS_QUALapprox=|583|0;AS_VarDP=23|17|0;BaseQRankSum=0.123;DP=51;MQRankSum=-1.630;QUALapprox=583;RAW_GT_COUNT=0,1,0;RAW_MQandDP=178961,51;ReadPosRankSum=-2.772;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:23,17,0:40:99:583,0,863,657,913,1570:11,12,8,9 +chrX 3329455 . A . . END=3329584 GT:DP:GQ:MIN_DP:PL 0/0:59:31:58:0,31,1539 +chrX 3329585 . G A, 934.64 . AS_QUALapprox=|942|0;AS_VarDP=26|34|0;BaseQRankSum=0.654;DP=64;MQRankSum=0.000;QUALapprox=942;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=0.336;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:26,34,0:60:99:942,0,634,1020,736,1756:13,13,22,12 +chrX 3329586 . T . . END=3332307 GT:DP:GQ:MIN_DP:PL 0/0:53:63:53:0,63,1091 +chrX 3332308 . C G, 690.64 . AS_QUALapprox=|698|0;AS_VarDP=28|30|0;BaseQRankSum=-1.357;DP=59;MQRankSum=0.000;QUALapprox=698;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-0.576;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:28,30,0:58:99:698,0,705,782,794,1576:12,16,16,14 +chrX 3332309 . A . . END=3333283 GT:DP:GQ:MIN_DP:PL 0/0:36:24:36:0,24,1033 +chrX 3333284 . C . . END=3333284 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,939 +chrX 3333285 . A . . END=3333287 GT:DP:GQ:MIN_DP:PL 0/0:38:50:38:0,50,1123 +chrX 3333288 . G . . END=3333289 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,844 +chrX 3333290 . A . . END=3333291 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,99,1485 +chrX 3333292 . T . . END=3333292 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,896 +chrX 3333293 . A . . END=3333295 GT:DP:GQ:MIN_DP:PL 0/0:43:22:43:0,22,1119 +chrX 3333296 . C . . END=3333297 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,1054 +chrX 3333298 . A . . END=3333298 GT:DP:GQ:MIN_DP:PL 0/0:44:87:44:0,87,1305 +chrX 3333299 . T . . END=3333299 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,1034 +chrX 3333300 . A . . END=3333300 GT:DP:GQ:MIN_DP:PL 0/0:48:87:48:0,87,1305 +chrX 3333301 . T . . END=3333301 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,696 +chrX 3333302 . CAA C,CAAAA, 283.02 . AS_QUALapprox=|125|137|0;AS_VarDP=1|6|8|0;BaseQRankSum=2.762;DP=33;MQRankSum=0.000;QUALapprox=300;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115193,33;ReadPosRankSum=-1.472;VarDP=15 GT:AD:DP:GQ:PL:SB 1/2:1,6,8,0:15:99:300,175,323,163,0,222,340,271,217,449:0,1,9,5 +chrX 3333305 . A . . END=3333352 GT:DP:GQ:MIN_DP:PL 0/0:24:34:23:0,34,649 +chrX 3333353 . G . . END=3333353 GT:DP:GQ:MIN_DP:PL 0/0:37:5:37:0,5,818 +chrX 3333354 . A . . END=3333391 GT:DP:GQ:MIN_DP:PL 0/0:36:64:36:0,64,939 +chrX 3333392 . A T, 1107.06 . AS_QUALapprox=|1121|0;AS_VarDP=2|36|0;BaseQRankSum=2.679;DP=43;MQRankSum=0.000;QUALapprox=1121;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154800,43;ReadPosRankSum=-1.014;VarDP=38 GT:AD:DP:GQ:PL:SB 1/1:2,36,0:38:79:1121,79,0,1126,108,1155:2,0,25,11 +chrX 3333393 . T . . END=3335347 GT:DP:GQ:MIN_DP:PL 0/0:54:63:54:0,63,1169 +chrX 3335348 . T C, 440.64 . AS_QUALapprox=|448|0;AS_VarDP=30|19|0;BaseQRankSum=-0.716;DP=52;MQRankSum=0.000;QUALapprox=448;RAW_GT_COUNT=0,1,0;RAW_MQandDP=184000,52;ReadPosRankSum=0.647;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:30,19,0:49:99:448,0,816,537,873,1410:14,16,10,9 +chrX 3335349 . A . . END=3336086 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,100,1563 +chrX 3336087 . T C, 649.64 . AS_QUALapprox=|657|0;AS_VarDP=36|26|0;BaseQRankSum=0.183;DP=64;MQRankSum=0.000;QUALapprox=657;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=0.071;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:36,26,0:62:99:657,0,975,766,1053,1818:13,23,16,10 +chrX 3336088 . G . . END=3336996 GT:DP:GQ:MIN_DP:PL 0/0:49:80:49:0,80,1211 +chrX 3336997 . C G, 683.64 . AS_QUALapprox=|691|0;AS_VarDP=25|26|0;BaseQRankSum=-0.926;DP=51;MQRankSum=0.000;QUALapprox=691;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=0.547;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:25,26,0:51:99:691,0,671,766,749,1514:12,13,7,19 +chrX 3336998 . A . . END=3338957 GT:DP:GQ:MIN_DP:PL 0/0:47:61:47:0,61,1101 +chrX 3338958 . T TTAGA, 557.60 . AS_QUALapprox=|565|0;AS_VarDP=19|15|0;BaseQRankSum=0.148;DP=53;MQRankSum=0.000;QUALapprox=565;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=1.944;VarDP=34 GT:AD:DP:GQ:PL:SB 0/1:19,15,0:34:99:565,0,733,622,778,1400:12,7,10,5 +chrX 3338959 . T . . END=3339303 GT:DP:GQ:MIN_DP:PL 0/0:62:49:62:0,49,1485 +chrX 3339304 . A G, 668.64 . AS_QUALapprox=|676|0;AS_VarDP=33|26|0;BaseQRankSum=0.972;DP=61;MQRankSum=-1.092;QUALapprox=676;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219025,61;ReadPosRankSum=0.390;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:33,26,0:59:99:676,0,869,776,947,1723:16,17,11,15 +chrX 3339305 . C . . END=3341016 GT:DP:GQ:MIN_DP:PL 0/0:60:67:60:0,67,978 +chrX 3341017 . G . . END=3341017 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,831 +chrX 3341018 . A . . END=3341025 GT:DP:GQ:MIN_DP:PL 0/0:40:54:40:0,54,1096 +chrX 3341026 . A . . END=3341026 GT:DP:GQ:MIN_DP:PL 0/0:39:13:39:0,13,1036 +chrX 3341027 . A . . END=3341028 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,108,1620 +chrX 3341029 . G . . END=3341029 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,844 +chrX 3341030 . T . . END=3341039 GT:DP:GQ:MIN_DP:PL 0/0:43:34:42:0,34,1083 +chrX 3341040 . A . . END=3341041 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,947 +chrX 3341042 . T . . END=3341042 GT:DP:GQ:MIN_DP:PL 0/0:42:56:42:0,56,1160 +chrX 3341043 . G . . END=3341043 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,679 +chrX 3341044 . T . . END=3341044 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,117,1755 +chrX 3341045 . G . . END=3341045 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,700 +chrX 3341046 . T . . END=3341048 GT:DP:GQ:MIN_DP:PL 0/0:40:26:39:0,26,1077 +chrX 3341049 . A . . END=3341050 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,982 +chrX 3341051 . T . . END=3341054 GT:DP:GQ:MIN_DP:PL 0/0:41:85:41:0,85,1179 +chrX 3341055 . T . . END=3341057 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,887 +chrX 3341058 . T . . END=3341060 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,120,1800 +chrX 3341061 . A . . END=3341064 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,992 +chrX 3341065 . T . . END=3341065 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,103,1359 +chrX 3341066 . A . . END=3341070 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,1020 +chrX 3341071 . A . . END=3341073 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,120,1800 +chrX 3341074 . T . . END=3341076 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,996 +chrX 3341077 . T . . END=3341084 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,109,1320 +chrX 3341085 . A . . END=3341086 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,783 +chrX 3341087 . A . . END=3341093 GT:DP:GQ:MIN_DP:PL 0/0:48:34:46:0,34,1260 +chrX 3341094 . G . . END=3341094 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,545 +chrX 3341095 . T . . END=3341099 GT:DP:GQ:MIN_DP:PL 0/0:50:40:50:0,40,1299 +chrX 3341100 . C . . END=3341103 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,580 +chrX 3341104 . A ATATAATATAATATATTATACATAATATATATTATGTATAATATAATATATTATACATAATATATATTATGTATAATATATTATATTATACATAATATATATTATGTATAATATATTATATTATG, 1103.03 . AS_QUALapprox=|1117|0;AS_VarDP=18|26|0;BaseQRankSum=2.343;DP=50;MQRankSum=-1.317;QUALapprox=1117;RAW_GT_COUNT=0,0,1;RAW_MQandDP=157405,50;ReadPosRankSum=-1.520;VarDP=44 GT:AD:DP:GQ:PL:SB 1/1:18,26,0:44:51:1117,51,0,1137,78,1164:7,11,8,18 +chrX 3341105 . T . . END=3341133 GT:DP:GQ:MIN_DP:PL 0/0:44:48:44:0,48,720 +chrX 3341134 . T . . END=3341135 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,0 +chrX 3341136 . T . . END=3341138 GT:DP:GQ:MIN_DP:PL 0/0:34:48:34:0,48,720 +chrX 3341139 . A . . END=3341139 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,0 +chrX 3341140 . T . . END=3341140 GT:DP:GQ:MIN_DP:PL 0/0:34:48:34:0,48,720 +chrX 3341141 . T . . END=3341143 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,0 +chrX 3341144 . A . . END=3341144 GT:DP:GQ:MIN_DP:PL 0/0:30:48:30:0,48,720 +chrX 3341145 . C . . END=3341145 GT:DP:GQ:MIN_DP:PL 0/0:24:0:24:0,0,39 +chrX 3341146 . A . . END=3341148 GT:DP:GQ:MIN_DP:PL 0/0:28:39:28:0,39,585 +chrX 3341149 . T . . END=3341151 GT:DP:GQ:MIN_DP:PL 0/0:25:0:25:0,0,178 +chrX 3341152 . T . . END=3341154 GT:DP:GQ:MIN_DP:PL 0/0:28:39:28:0,39,585 +chrX 3341155 . A . . END=3341159 GT:DP:GQ:MIN_DP:PL 0/0:26:0:26:0,0,123 +chrX 3341160 . A . . END=3341162 GT:DP:GQ:MIN_DP:PL 0/0:27:42:27:0,42,630 +chrX 3341163 . T . . END=3341165 GT:DP:GQ:MIN_DP:PL 0/0:25:0:25:0,0,84 +chrX 3341166 . T . . END=3341170 GT:DP:GQ:MIN_DP:PL 0/0:26:39:26:0,39,585 +chrX 3341171 . A . . END=3341175 GT:DP:GQ:MIN_DP:PL 0/0:19:0:19:0,0,154 +chrX 3341176 . A . . END=3341178 GT:DP:GQ:MIN_DP:PL 0/0:19:39:19:0,39,585 +chrX 3341179 . T . . END=3341189 GT:DP:GQ:MIN_DP:PL 0/0:17:0:17:0,0,174 +chrX 3341190 . T . . END=3341191 GT:DP:GQ:MIN_DP:PL 0/0:20:42:20:0,42,630 +chrX 3341192 . A . . END=3341194 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,307 +chrX 3341195 . A . . END=3341196 GT:DP:GQ:MIN_DP:PL 0/0:19:42:19:0,42,630 +chrX 3341197 . T . . END=3341197 GT:DP:GQ:MIN_DP:PL 0/0:15:0:15:0,0,362 +chrX 3341198 . A . . END=3341204 GT:DP:GQ:MIN_DP:PL 0/0:20:36:19:0,36,540 +chrX 3341205 . A . . END=3341205 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,377 +chrX 3341206 . T . . END=3341208 GT:DP:GQ:MIN_DP:PL 0/0:19:42:19:0,42,630 +chrX 3341209 . A . . END=3341209 GT:DP:GQ:MIN_DP:PL 0/0:18:19:18:0,19,495 +chrX 3341210 . T . . END=3341211 GT:DP:GQ:MIN_DP:PL 0/0:18:45:18:0,45,675 +chrX 3341212 . A . . END=3341213 GT:DP:GQ:MIN_DP:PL 0/0:18:19:18:0,19,506 +chrX 3341214 . A . . END=3341426 GT:DP:GQ:MIN_DP:PL 0/0:17:24:10:0,24,282 +chrX 3341427 . G A, 70.64 . AS_QUALapprox=|78|0;AS_VarDP=6|3|0;BaseQRankSum=1.559;DP=10;MQRankSum=0.712;QUALapprox=78;RAW_GT_COUNT=0,1,0;RAW_MQandDP=28795,10;ReadPosRankSum=-1.510;VarDP=9 GT:AD:DP:GQ:PL:SB 0/1:6,3,0:9:78:78,0,112,95,121,216:1,5,2,1 +chrX 3341428 . T . . END=3341428 GT:DP:GQ:MIN_DP:PL 0/0:9:12:9:0,12,243 +chrX 3341429 . A . . END=3341441 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,315 +chrX 3341442 . A . . END=3341492 GT:DP:GQ:MIN_DP:PL 0/0:6:0:6:0,0,109 +chrX 3341493 . T . . END=3341509 GT:DP:GQ:MIN_DP:PL 0/0:12:21:10:0,21,315 +chrX 3341510 . T . . END=3341510 GT:DP:GQ:MIN_DP:PL 0/0:13:0:13:0,0,262 +chrX 3341511 . A . . END=3341598 GT:DP:GQ:MIN_DP:PL 0/0:17:33:12:0,33,356 +chrX 3341599 . T . . END=3341607 GT:DP:GQ:MIN_DP:PL 0/0:22:0:22:0,0,84 +chrX 3341608 . T . . END=3341980 GT:DP:GQ:MIN_DP:PL 0/0:36:31:22:0,31,596 +chrX 3341981 . T C, 882.64 . AS_QUALapprox=|890|0;AS_VarDP=13|31|0;BaseQRankSum=0.194;DP=45;MQRankSum=-0.598;QUALapprox=890;RAW_GT_COUNT=0,1,0;RAW_MQandDP=161764,45;ReadPosRankSum=0.090;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:13,31,0:44:99:890,0,299,929,392,1322:2,11,14,17 +chrX 3341982 . G . . END=3342015 GT:DP:GQ:MIN_DP:PL 0/0:41:96:41:0,96,1326 +chrX 3342016 . C CAACAATGATAGACTGGAAA, 1285.60 . AS_QUALapprox=|1293|0;AS_VarDP=13|32|0;BaseQRankSum=0.373;DP=48;MQRankSum=-1.293;QUALapprox=1293;RAW_GT_COUNT=0,1,0;RAW_MQandDP=168694,48;ReadPosRankSum=-1.304;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:13,32,0:45:99:1293,0,450,1332,547,1879:4,9,16,16 +chrX 3342017 . A . . END=3342463 GT:DP:GQ:MIN_DP:PL 0/0:48:58:48:0,58,991 +chrX 3342464 . G T, 617.64 . AS_QUALapprox=|625|0;AS_VarDP=38|24|0;BaseQRankSum=-0.015;DP=65;MQRankSum=0.000;QUALapprox=625;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=-0.838;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:38,24,0:62:99:625,0,1088,739,1160,1899:17,21,14,10 +chrX 3342465 . T . . END=3344094 GT:DP:GQ:MIN_DP:PL 0/0:53:86:53:0,86,1200 +chrX 3344095 . C G, 629.64 . AS_QUALapprox=|637|0;AS_VarDP=25|24|0;BaseQRankSum=-0.733;DP=49;MQRankSum=-0.650;QUALapprox=637;RAW_GT_COUNT=0,1,0;RAW_MQandDP=173955,49;ReadPosRankSum=-0.180;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:25,24,0:49:99:637,0,676,712,749,1461:12,13,11,13 +chrX 3344096 . G . . END=3345648 GT:DP:GQ:MIN_DP:PL 0/0:36:34:34:0,34,933 +chrX 3345649 . T C, 782.64 . AS_QUALapprox=|790|0;AS_VarDP=25|29|0;BaseQRankSum=-0.684;DP=57;MQRankSum=0.000;QUALapprox=790;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=1.198;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:25,29,0:54:99:790,0,687,865,774,1639:10,15,16,13 +chrX 3345650 . G . . END=3345703 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 3345704 . G A, 691.64 . AS_QUALapprox=|699|0;AS_VarDP=27|28|0;BaseQRankSum=0.760;DP=56;MQRankSum=0.000;QUALapprox=699;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-1.390;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:27,28,0:55:99:699,0,680,780,762,1542:12,15,16,12 +chrX 3345705 . G . . END=3346098 GT:DP:GQ:MIN_DP:PL 0/0:47:73:47:0,73,1145 +chrX 3346099 . C A, 452.64 . AS_QUALapprox=|460|0;AS_VarDP=20|17|0;BaseQRankSum=1.384;DP=39;MQRankSum=0.000;QUALapprox=460;RAW_GT_COUNT=0,1,0;RAW_MQandDP=140400,39;ReadPosRankSum=0.351;VarDP=37 GT:AD:DP:GQ:PL:SB 0/1:20,17,0:37:99:460,0,509,520,560,1080:8,12,11,6 +chrX 3346100 . G . . END=3346413 GT:DP:GQ:MIN_DP:PL 0/0:46:80:46:0,80,1200 +chrX 3346414 . G A, 821.64 . AS_QUALapprox=|829|0;AS_VarDP=32|32|0;BaseQRankSum=-0.756;DP=68;MQRankSum=0.000;QUALapprox=829;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=0.752;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:32,32,0:64:99:829,0,881,925,976,1901:20,12,19,13 +chrX 3346415 . C . . END=3347101 GT:DP:GQ:MIN_DP:PL 0/0:59:81:59:0,81,1210 +chrX 3347102 . A G, 464.64 . AS_QUALapprox=|472|0;AS_VarDP=23|18|0;BaseQRankSum=0.081;DP=42;MQRankSum=0.000;QUALapprox=472;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151200,42;ReadPosRankSum=1.327;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:23,18,0:41:99:472,0,636,542,690,1232:17,6,13,5 +chrX 3347103 . G . . END=3348006 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,104,1360 +chrX 3348007 . A ATT, 910.60 . AS_QUALapprox=|918|0;AS_VarDP=19|29|0;BaseQRankSum=-2.333;DP=56;MQRankSum=0.000;QUALapprox=918;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-0.770;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:19,29,0:48:99:918,0,549,975,636,1611:10,9,18,11 +chrX 3348008 . T . . END=3348093 GT:DP:GQ:MIN_DP:PL 0/0:49:75:49:0,75,1249 +chrX 3348094 . A C, 1375.06 . AS_QUALapprox=|1389|0;AS_VarDP=0|44|0;DP=47;QUALapprox=1389;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;VarDP=44 GT:AD:DP:GQ:PL:SB 1/1:0,44,0:44:99:1389,131,0,1389,131,1389:0,0,24,20 +chrX 3348095 . C . . END=3349009 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,108,1407 +chrX 3349010 . C T, 960.64 . AS_QUALapprox=|968|0;AS_VarDP=24|34|0;BaseQRankSum=1.361;DP=61;MQRankSum=0.000;QUALapprox=968;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=1.509;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:24,34,0:58:99:968,0,585,1040,687,1727:12,12,16,18 +chrX 3349011 . G . . END=3349191 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 3349192 . TTGAA T, 1027.60 . AS_QUALapprox=|1035|0;AS_VarDP=24|27|0;BaseQRankSum=-1.485;DP=59;MQRankSum=0.000;QUALapprox=1035;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-1.001;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:24,27,0:51:99:1035,0,922,1108,1003,2111:13,11,13,14 +chrX 3349197 . T . . END=3350538 GT:DP:GQ:MIN_DP:PL 0/0:56:44:56:0,44,1025 +chrX 3350539 . T G, 460.64 . AS_QUALapprox=|468|0;AS_VarDP=24|17|0;BaseQRankSum=2.225;DP=42;MQRankSum=0.000;QUALapprox=468;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151200,42;ReadPosRankSum=1.496;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:24,17,0:41:99:468,0,650,540,701,1241:10,14,5,12 +chrX 3350540 . T . . END=3350667 GT:DP:GQ:MIN_DP:PL 0/0:40:22:32:0,22,844 +chrX 3350668 . G . . END=3350668 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,946 +chrX 3350669 . A AATAT, 437.60 . AS_QUALapprox=|445|0;AS_VarDP=14|12|0;BaseQRankSum=-0.879;DP=33;MQRankSum=1.391;QUALapprox=445;RAW_GT_COUNT=0,1,0;RAW_MQandDP=116293,33;ReadPosRankSum=-0.231;VarDP=26 GT:AD:DP:GQ:PL:SB 0/1:14,12,0:26:99:445,0,490,487,526,1013:8,6,5,7 +chrX 3350670 . A . . END=3350694 GT:DP:GQ:MIN_DP:PL 0/0:32:57:32:0,57,855 +chrX 3350695 . T TAC, 727.60 . AS_QUALapprox=|735|0;AS_VarDP=14|20|0;BaseQRankSum=0.723;DP=35;MQRankSum=-1.158;QUALapprox=735;RAW_GT_COUNT=0,1,0;RAW_MQandDP=122702,35;ReadPosRankSum=-0.911;VarDP=34 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:14,20,0:34:99:0|1:3350695_T_TAC:735,0,514,777,574,1351:3350695:5,9,11,9 +chrX 3350696 . A . . END=3350696 GT:DP:GQ:MIN_DP:PL 0/0:34:75:34:0,75,1125 +chrX 3350697 . T TATATATATATAC, 763.60 . AS_QUALapprox=|771|0;AS_VarDP=16|21|0;BaseQRankSum=-0.487;DP=38;MQRankSum=-1.212;QUALapprox=771;RAW_GT_COUNT=0,1,0;RAW_MQandDP=133502,38;ReadPosRankSum=-1.011;VarDP=37 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:16,21,0:37:99:0|1:3350695_T_TAC:771,0,575,819,638,1457:3350695:7,9,11,10 +chrX 3350698 . A . . END=3350717 GT:DP:GQ:MIN_DP:PL 0/0:29:66:29:0,66,814 +chrX 3350718 . A G, 510.64 . AS_QUALapprox=|518|0;AS_VarDP=13|14|0;BaseQRankSum=-2.010;DP=28;MQRankSum=-0.889;QUALapprox=518;RAW_GT_COUNT=0,1,0;RAW_MQandDP=98644,28;ReadPosRankSum=0.122;VarDP=27 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:13,14,0:27:99:0|1:3350695_T_TAC:518,0,454,557,496,1053:3350695:6,7,7,7 +chrX 3350719 . G . . END=3350759 GT:DP:GQ:MIN_DP:PL 0/0:34:72:34:0,72,888 +chrX 3350760 . G C, 511.64 . AS_QUALapprox=|519|0;AS_VarDP=18|19|0;BaseQRankSum=-0.385;DP=38;MQRankSum=0.000;QUALapprox=519;RAW_GT_COUNT=0,1,0;RAW_MQandDP=136800,38;ReadPosRankSum=0.410;VarDP=37 GT:AD:DP:GQ:PL:SB 0/1:18,19,0:37:99:519,0,494,573,552,1125:12,6,11,8 +chrX 3350761 . C . . END=3351012 GT:DP:GQ:MIN_DP:PL 0/0:46:88:46:0,88,1261 +chrX 3351013 . G A, 851.64 . AS_QUALapprox=|859|0;AS_VarDP=28|30|0;BaseQRankSum=2.896;DP=59;MQRankSum=0.000;QUALapprox=859;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=2.389;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:28,30,0:58:99:859,0,694,943,784,1727:16,12,14,16 +chrX 3351014 . A . . END=3351937 GT:DP:GQ:MIN_DP:PL 0/0:60:92:60:0,92,1261 +chrX 3351938 . T C, 667.64 . AS_QUALapprox=|675|0;AS_VarDP=33|25|0;BaseQRankSum=1.377;DP=58;MQRankSum=0.011;QUALapprox=675;RAW_GT_COUNT=0,1,0;RAW_MQandDP=193516,58;ReadPosRankSum=0.778;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:33,25,0:58:99:675,0,903,774,978,1752:16,17,10,15 +chrX 3351939 . A . . END=3352580 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,102,1277 +chrX 3352581 . G A, 938.64 . AS_QUALapprox=|946|0;AS_VarDP=31|25|0;BaseQRankSum=-1.078;DP=58;MQRankSum=-6.545;QUALapprox=946;RAW_GT_COUNT=0,1,0;RAW_MQandDP=156694,58;ReadPosRankSum=-1.608;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:31,25,0:56:99:0|1:3352581_G_A:946,0,1226,1039,1302,2341:3352581:12,19,13,12 +chrX 3352582 . T . . END=3352582 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 3352583 . T G, 938.64 . AS_QUALapprox=|946|0;AS_VarDP=31|25|0;BaseQRankSum=1.574;DP=56;MQRankSum=-6.545;QUALapprox=946;RAW_GT_COUNT=0,1,0;RAW_MQandDP=152804,56;ReadPosRankSum=-1.172;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:31,25,0:56:99:0|1:3352581_G_A:946,0,1226,1039,1302,2341:3352581:12,19,13,12 +chrX 3352584 . A . . END=3352584 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 3352585 . T C, 900.64 . AS_QUALapprox=|908|0;AS_VarDP=33|24|0;BaseQRankSum=-0.133;DP=57;MQRankSum=-6.650;QUALapprox=908;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158155,57;ReadPosRankSum=-1.262;VarDP=57 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:33,24,0:57:99:0|1:3352581_G_A:908,0,1293,1008,1365,2373:3352581:12,21,12,12 +chrX 3352586 . A . . END=3352589 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 3352590 . A G, 861.64 . AS_QUALapprox=|869|0;AS_VarDP=32|23|0;BaseQRankSum=-0.284;DP=55;MQRankSum=-6.602;QUALapprox=869;RAW_GT_COUNT=0,1,0;RAW_MQandDP=153074,55;ReadPosRankSum=-0.171;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:32,23,0:55:99:0|1:3352581_G_A:869,0,1244,966,1313,2279:3352581:12,20,11,12 +chrX 3352591 . T . . END=3352829 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 3352830 . G T, 1647.06 . AS_QUALapprox=|1661|0;AS_VarDP=0|51|0;DP=54;QUALapprox=1661;RAW_GT_COUNT=0,0,1;RAW_MQandDP=191282,54;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1661,152,0,1661,152,1661:0,0,18,33 +chrX 3352831 . G . . END=3353807 GT:DP:GQ:MIN_DP:PL 0/0:57:98:57:0,98,1485 +chrX 3353808 . C T, 898.64 . AS_QUALapprox=|906|0;AS_VarDP=23|31|0;BaseQRankSum=2.151;DP=55;MQRankSum=1.198;QUALapprox=906;RAW_GT_COUNT=0,1,0;RAW_MQandDP=197881,55;ReadPosRankSum=0.796;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:23,31,0:54:99:906,0,570,974,663,1638:11,12,18,13 +chrX 3353809 . T . . END=3354522 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,106,1483 +chrX 3354523 . G A, 795.64 . AS_QUALapprox=|803|0;AS_VarDP=28|32|0;BaseQRankSum=0.532;DP=61;MQRankSum=0.000;QUALapprox=803;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=1.282;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:28,32,0:60:99:803,0,669,886,764,1651:17,11,18,14 +chrX 3354524 . T . . END=3355505 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,101,1225 +chrX 3355506 . A ATAATTAT, 852.01 . AS_QUALapprox=|1165|0;AS_VarDP=27|30|0;BaseQRankSum=1.088;DP=65;MQRankSum=0.000;QUALapprox=1165;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=0.861;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:27,30,0:57:99:1165,0,1043,1063,1142,2223:17,10,11,9 +chrX 3355507 . T . . END=3355535 GT:DP:GQ:MIN_DP:PL 0/0:64:0:64:0,0,1353 +chrX 3355536 . A . . END=3355554 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,120,1800 +chrX 3355555 . A G,ATCATCTTTAATAATATTATAATTATTAATTATTAATG, 928.64 . AS_QUALapprox=|936|104|0;AS_VarDP=26|20|0|0;BaseQRankSum=-1.261;DP=73;MQRankSum=0.000;QUALapprox=936;RAW_GT_COUNT=0,1,0;RAW_MQandDP=262800,73;ReadPosRankSum=-1.020;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:26,20,0,0:46:99:936,0,1291,832,980,2166,976,1215,2040,2294:15,11,11,9 +chrX 3355556 . T . . END=3356166 GT:DP:GQ:MIN_DP:PL 0/0:67:92:67:0,92,1771 +chrX 3356167 . T A, 611.64 . AS_QUALapprox=|619|0;AS_VarDP=30|25|0;BaseQRankSum=-2.120;DP=56;MQRankSum=0.000;QUALapprox=619;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=0.237;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:30,25,0:55:99:619,0,857,709,932,1641:13,17,13,12 +chrX 3356168 . G . . END=3356540 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,105,1419 +chrX 3356541 . T C, 597.64 . AS_QUALapprox=|605|0;AS_VarDP=27|23|0;BaseQRankSum=0.435;DP=53;MQRankSum=-1.043;QUALapprox=605;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190225,53;ReadPosRankSum=-0.779;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:27,23,0:50:99:605,0,726,686,796,1482:17,10,8,15 +chrX 3356542 . C . . END=3356622 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 3356623 . T G, 631.64 . AS_QUALapprox=|639|0;AS_VarDP=31|24|0;BaseQRankSum=1.259;DP=56;MQRankSum=0.000;QUALapprox=639;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=1.715;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:31,24,0:55:99:639,0,817,732,889,1621:16,15,10,14 +chrX 3356624 . C . . END=3357536 GT:DP:GQ:MIN_DP:PL 0/0:54:83:54:0,83,1310 +chrX 3357537 . C CT, 374.60 . AS_QUALapprox=|382|0;AS_VarDP=10|21|0;BaseQRankSum=-1.070;DP=50;MQRankSum=-0.621;QUALapprox=382;RAW_GT_COUNT=0,1,0;RAW_MQandDP=174541,50;ReadPosRankSum=1.290;VarDP=31 GT:AD:DP:GQ:PL:SB 0/1:10,21,0:31:99:382,0,140,412,201,613:8,2,11,10 +chrX 3357538 . T . . END=3357553 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,99,1485 +chrX 3357554 . G . . END=3357554 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,902 +chrX 3357555 . A . . END=3357724 GT:DP:GQ:MIN_DP:PL 0/0:49:65:49:0,65,1031 +chrX 3357725 . C T, 595.64 . AS_QUALapprox=|603|0;AS_VarDP=25|22|0;BaseQRankSum=0.719;DP=49;MQRankSum=0.000;QUALapprox=603;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=-1.206;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:25,22,0:47:99:603,0,688,679,754,1432:13,12,6,16 +chrX 3357726 . G . . END=3357964 GT:DP:GQ:MIN_DP:PL 0/0:51:91:51:0,91,1310 +chrX 3357965 . G A, 614.64 . AS_QUALapprox=|622|0;AS_VarDP=25|24|0;BaseQRankSum=0.782;DP=49;MQRankSum=0.000;QUALapprox=622;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=-0.790;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:25,24,0:49:99:622,0,642,697,714,1411:13,12,14,10 +chrX 3357966 . T . . END=3358176 GT:DP:GQ:MIN_DP:PL 0/0:58:98:58:0,98,1515 +chrX 3358177 . C T, 811.64 . AS_QUALapprox=|819|0;AS_VarDP=30|31|0;BaseQRankSum=0.010;DP=62;MQRankSum=0.000;QUALapprox=819;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=-0.007;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:30,31,0:61:99:819,0,799,910,891,1801:14,16,18,13 +chrX 3358178 . T . . END=3358467 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,111,1509 +chrX 3358468 . G A, 519.64 . AS_QUALapprox=|527|0;AS_VarDP=26|20|0;BaseQRankSum=1.500;DP=51;MQRankSum=0.000;QUALapprox=527;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-1.519;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:26,20,0:46:99:527,0,675,605,735,1340:10,16,9,11 +chrX 3358469 . T . . END=3358607 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,111,1422 +chrX 3358608 . G A, 630.64 . AS_QUALapprox=|638|0;AS_VarDP=21|24|0;BaseQRankSum=-1.217;DP=47;MQRankSum=0.000;QUALapprox=638;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=0.193;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:21,24,0:45:99:638,0,560,701,632,1333:12,9,8,16 +chrX 3358609 . T . . END=3358998 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,112,1523 +chrX 3358999 . G A, 534.64 . AS_QUALapprox=|542|0;AS_VarDP=32|21|0;BaseQRankSum=2.483;DP=57;MQRankSum=-4.758;QUALapprox=542;RAW_GT_COUNT=0,1,0;RAW_MQandDP=193940,57;ReadPosRankSum=-0.773;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:32,21,0:53:99:542,0,773,637,836,1473:14,18,13,8 +chrX 3359000 . T . . END=3360208 GT:DP:GQ:MIN_DP:PL 0/0:55:74:55:0,74,1266 +chrX 3360209 . A T, 730.64 . AS_QUALapprox=|738|0;AS_VarDP=29|28|0;BaseQRankSum=0.895;DP=59;MQRankSum=-1.753;QUALapprox=738;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208638,59;ReadPosRankSum=-0.176;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:29,28,0:57:99:738,0,728,824,811,1636:14,15,14,14 +chrX 3360210 . C . . END=3360510 GT:DP:GQ:MIN_DP:PL 0/0:54:95:54:0,95,1454 +chrX 3360511 . G A, 789.64 . AS_QUALapprox=|797|0;AS_VarDP=33|31|0;BaseQRankSum=-1.417;DP=65;MQRankSum=-3.319;QUALapprox=797;RAW_GT_COUNT=0,1,0;RAW_MQandDP=211901,65;ReadPosRankSum=-0.128;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:33,31,0:64:99:797,0,910,895,1003,1898:17,16,17,14 +chrX 3360512 . A . . END=3360696 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,117,1528 +chrX 3360697 . G C, 478.64 . AS_QUALapprox=|486|0;AS_VarDP=29|19|0;BaseQRankSum=0.996;DP=48;MQRankSum=0.237;QUALapprox=486;RAW_GT_COUNT=0,1,0;RAW_MQandDP=157751,48;ReadPosRankSum=0.148;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:29,19,0:48:99:486,0,766,573,823,1396:14,15,8,11 +chrX 3360698 . G . . END=3361199 GT:DP:GQ:MIN_DP:PL 0/0:52:50:52:0,50,928 +chrX 3361200 . T A, 684.64 . AS_QUALapprox=|692|0;AS_VarDP=23|26|0;BaseQRankSum=-0.134;DP=51;MQRankSum=0.000;QUALapprox=692;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-1.413;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:23,26,0:49:99:692,0,598,760,676,1436:9,14,10,16 +chrX 3361201 . T . . END=3361734 GT:DP:GQ:MIN_DP:PL 0/0:56:83:56:0,83,1310 +chrX 3361735 . G A, 507.64 . AS_QUALapprox=|515|0;AS_VarDP=26|19|0;BaseQRankSum=1.366;DP=45;MQRankSum=0.000;QUALapprox=515;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=0.380;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:26,19,0:45:99:515,0,718,593,776,1369:12,14,5,14 +chrX 3361736 . C . . END=3361782 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,112,1381 +chrX 3361783 . C T, 636.64 . AS_QUALapprox=|644|0;AS_VarDP=32|24|0;BaseQRankSum=2.080;DP=58;MQRankSum=0.000;QUALapprox=644;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-2.560;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:32,24,0:56:99:644,0,829,740,901,1641:15,17,12,12 +chrX 3361784 . G . . END=3361899 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 3361900 . A G, 656.64 . AS_QUALapprox=|664|0;AS_VarDP=31|27|0;BaseQRankSum=-0.804;DP=59;MQRankSum=0.000;QUALapprox=664;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=0.140;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:31,27,0:58:99:664,0,808,757,889,1647:13,18,16,11 +chrX 3361901 . C . . END=3361959 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 3361960 . C A, 609.64 . AS_QUALapprox=|617|0;AS_VarDP=30|23|0;BaseQRankSum=1.170;DP=55;MQRankSum=0.000;QUALapprox=617;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-0.763;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:30,23,0:53:99:617,0,807,755,940,1922:13,17,9,14 +chrX 3361961 . A . . END=3362071 GT:DP:GQ:MIN_DP:PL 0/0:63:63:63:0,63,1555 +chrX 3362072 . A G, 874.64 . AS_QUALapprox=|882|0;AS_VarDP=21|31|0;BaseQRankSum=-0.876;DP=52;MQRankSum=0.000;QUALapprox=882;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=-0.131;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:21,31,0:52:99:882,0,549,944,642,1586:13,8,16,15 +chrX 3362073 . C . . END=3362336 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,115,1679 +chrX 3362337 . C T, 747.64 . AS_QUALapprox=|755|0;AS_VarDP=35|28|0;BaseQRankSum=1.321;DP=64;MQRankSum=0.000;QUALapprox=755;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=-0.367;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:35,28,0:63:99:755,0,917,859,1002,1861:17,18,16,12 +chrX 3362338 . T . . END=3363307 GT:DP:GQ:MIN_DP:PL 0/0:61:95:61:0,95,1205 +chrX 3363308 . G A, 507.64 . AS_QUALapprox=|515|0;AS_VarDP=36|21|0;BaseQRankSum=0.711;DP=57;MQRankSum=0.000;QUALapprox=515;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=0.794;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:36,21,0:57:99:515,0,971,622,1033,1655:13,23,7,14 +chrX 3363309 . G . . END=3363477 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,106,1697 +chrX 3363478 . C G, 871.64 . AS_QUALapprox=|879|0;AS_VarDP=22|32|0;BaseQRankSum=0.471;DP=56;MQRankSum=0.000;QUALapprox=879;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-0.114;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:22,32,0:54:99:879,0,563,945,659,1604:14,8,17,15 +chrX 3363479 . A . . END=3364022 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,104,1365 +chrX 3364023 . G A, 1243.64 . AS_QUALapprox=|1251|0;AS_VarDP=27|32|0;BaseQRankSum=1.001;DP=62;MQRankSum=0.000;QUALapprox=1251;RAW_GT_COUNT=0,1,0;RAW_MQandDP=221121,62;ReadPosRankSum=-0.152;VarDP=59 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,32,0:59:99:0|1:3364023_G_A:1251,0,1037,1332,1134,2466:3364023:13,14,19,13 +chrX 3364024 . A . . END=3364026 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 3364027 . G C, 1243.64 . AS_QUALapprox=|1251|0;AS_VarDP=27|32|0;BaseQRankSum=-0.622;DP=61;MQRankSum=0.000;QUALapprox=1251;RAW_GT_COUNT=0,1,0;RAW_MQandDP=217521,61;ReadPosRankSum=-0.358;VarDP=59 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,32,0:59:99:0|1:3364023_G_A:1251,0,1037,1332,1134,2466:3364023:13,14,19,13 +chrX 3364028 . T . . END=3364217 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 3364218 . C A, 757.64 . AS_QUALapprox=|765|0;AS_VarDP=31|30|0;BaseQRankSum=-1.631;DP=64;MQRankSum=0.000;QUALapprox=765;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=-0.209;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:31,30,0:61:99:765,0,850,858,940,1797:15,16,19,11 +chrX 3364219 . T . . END=3364358 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,103,1587 +chrX 3364359 . G A, 911.64 . AS_QUALapprox=|919|0;AS_VarDP=22|31|0;BaseQRankSum=1.722;DP=53;MQRankSum=0.000;QUALapprox=919;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=-0.794;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:22,31,0:53:99:919,0,556,984,649,1633:9,13,13,18 +chrX 3364360 . T . . END=3364712 GT:DP:GQ:MIN_DP:PL 0/0:56:91:56:0,91,1320 +chrX 3364713 . G A, 967.64 . AS_QUALapprox=|975|0;AS_VarDP=23|25|0;BaseQRankSum=-1.569;DP=51;MQRankSum=0.000;QUALapprox=975;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-0.083;VarDP=48 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,25,0:48:99:0|1:3364713_G_A:975,0,879,1045,954,1999:3364713:16,7,15,10 +chrX 3364714 . G . . END=3364714 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,120,1800 +chrX 3364715 . G C, 967.64 . AS_QUALapprox=|975|0;AS_VarDP=23|25|0;BaseQRankSum=-1.904;DP=48;MQRankSum=0.000;QUALapprox=975;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=-0.245;VarDP=48 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,25,0:48:99:0|1:3364713_G_A:975,0,879,1045,954,1999:3364713:16,7,15,10 +chrX 3364716 . C T, 970.64 . AS_QUALapprox=|978|0;AS_VarDP=22|25|0;BaseQRankSum=-1.977;DP=47;MQRankSum=0.000;QUALapprox=978;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=-0.181;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,25,0:47:99:0|1:3364713_G_A:978,0,849,1045,924,1968:3364713:16,6,15,10 +chrX 3364717 . G . . END=3365117 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,110,1364 +chrX 3365118 . A T, 813.64 . AS_QUALapprox=|821|0;AS_VarDP=29|30|0;BaseQRankSum=1.669;DP=60;MQRankSum=0.000;QUALapprox=821;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=-0.683;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:29,30,0:59:99:821,0,735,908,825,1733:11,18,14,16 +chrX 3365119 . G . . END=3365165 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 3365166 . A G, 615.64 . AS_QUALapprox=|623|0;AS_VarDP=39|25|0;BaseQRankSum=1.091;DP=64;MQRankSum=0.000;QUALapprox=623;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=0.544;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:39,25,0:64:99:623,0,1022,739,1096,1835:15,24,15,10 +chrX 3365167 . A . . END=3368938 GT:DP:GQ:MIN_DP:PL 0/0:59:61:59:0,61,1131 +chrX 3368939 . T TA, 488.60 . AS_QUALapprox=|496|0;AS_VarDP=27|23|0;BaseQRankSum=2.925;DP=57;MQRankSum=0.000;QUALapprox=496;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=0.253;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:27,23,0:50:99:496,0,611,577,680,1257:10,17,13,10 +chrX 3368940 . A . . END=3371722 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,99,1296 +chrX 3371723 . C T, 453.64 . AS_QUALapprox=|461|0;AS_VarDP=29|19|0;BaseQRankSum=0.867;DP=50;MQRankSum=0.000;QUALapprox=461;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=-1.265;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:29,19,0:48:99:461,0,764,549,821,1369:15,14,8,11 +chrX 3371724 . A . . END=3372599 GT:DP:GQ:MIN_DP:PL 0/0:53:88:53:0,88,1205 +chrX 3372600 . T A, 1042.64 . AS_QUALapprox=|1050|0;AS_VarDP=21|36|0;BaseQRankSum=2.053;DP=60;MQRankSum=0.000;QUALapprox=1050;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=1.051;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:21,36,0:57:99:1050,0,482,1113,591,1703:7,14,13,23 +chrX 3372601 . T . . END=3373550 GT:DP:GQ:MIN_DP:PL 0/0:51:80:51:0,80,1261 +chrX 3373551 . C T, 270.64 . AS_QUALapprox=|278|0;AS_VarDP=32|14|0;BaseQRankSum=-1.872;DP=48;MQRankSum=0.000;QUALapprox=278;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=-0.096;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:32,14,0:46:99:278,0,903,374,945,1320:15,17,7,7 +chrX 3373552 . G . . END=3375708 GT:DP:GQ:MIN_DP:PL 0/0:56:84:56:0,84,1115 +chrX 3375709 . A G, 581.64 . AS_QUALapprox=|589|0;AS_VarDP=23|22|0;BaseQRankSum=-0.452;DP=48;MQRankSum=-0.032;QUALapprox=589;RAW_GT_COUNT=0,1,0;RAW_MQandDP=170465,48;ReadPosRankSum=0.659;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:23,22,0:45:99:589,0,634,658,700,1359:14,9,9,13 +chrX 3375710 . A . . END=3376245 GT:DP:GQ:MIN_DP:PL 0/0:50:79:50:0,79,1264 +chrX 3376246 . T C, 1365.06 . AS_QUALapprox=|1379|0;AS_VarDP=0|44|0;DP=46;QUALapprox=1379;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;VarDP=44 GT:AD:DP:GQ:PL:SB 1/1:0,44,0:44:99:1379,132,0,1379,132,1379:0,0,17,27 +chrX 3376247 . G . . END=3376963 GT:DP:GQ:MIN_DP:PL 0/0:51:48:51:0,48,625 +chrX 3376964 . C T, 562.06 . AS_QUALapprox=|576|0;AS_VarDP=0|18|0;DP=18;QUALapprox=576;RAW_GT_COUNT=0,0,1;RAW_MQandDP=64800,18;VarDP=18 GT:AD:DP:GQ:PL:SB 1/1:0,18,0:18:54:576,54,0,576,54,576:0,0,6,12 +chrX 3376965 . C . . END=3376975 GT:DP:GQ:MIN_DP:PL 0/0:18:42:18:0,42,630 +chrX 3376976 . G A, 506.06 . AS_QUALapprox=|520|0;AS_VarDP=0|17|0;DP=18;QUALapprox=520;RAW_GT_COUNT=0,0,1;RAW_MQandDP=64800,18;VarDP=17 GT:AD:DP:GQ:PL:SB 1/1:0,17,0:17:50:520,50,0,520,50,520:0,0,5,12 +chrX 3376977 . A . . END=3377025 GT:DP:GQ:MIN_DP:PL 0/0:23:42:23:0,42,487 +chrX 3377026 . C T, 735.06 . AS_QUALapprox=|749|0;AS_VarDP=0|23|0;DP=24;QUALapprox=749;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86400,24;VarDP=23 GT:AD:DP:GQ:PL:SB 1/1:0,23,0:23:69:749,69,0,749,69,749:0,0,13,10 +chrX 3377027 . T . . END=3377153 GT:DP:GQ:MIN_DP:PL 0/0:25:52:25:0,52,661 +chrX 3377154 . G C, 611.06 . AS_QUALapprox=|625|0;AS_VarDP=0|19|0;DP=20;QUALapprox=625;RAW_GT_COUNT=0,0,1;RAW_MQandDP=72000,20;VarDP=19 GT:AD:DP:GQ:PL:SB 1/1:0,19,0:19:57:625,57,0,625,57,625:0,0,13,6 +chrX 3377155 . C . . END=3377387 GT:DP:GQ:MIN_DP:PL 0/0:21:28:21:0,28,571 +chrX 3377388 . G . . END=3377388 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,864 +chrX 3377389 . G . . END=3377391 GT:DP:GQ:MIN_DP:PL 0/0:33:30:33:0,30,948 +chrX 3377392 . G . . END=3377392 GT:DP:GQ:MIN_DP:PL 0/0:34:8:34:0,8,923 +chrX 3377393 . A . . END=3377402 GT:DP:GQ:MIN_DP:PL 0/0:34:33:34:0,33,972 +chrX 3377403 . A . . END=3377403 GT:DP:GQ:MIN_DP:PL 0/0:40:16:40:0,16,1101 +chrX 3377404 . T . . END=3377404 GT:DP:GQ:MIN_DP:PL 0/0:41:74:41:0,74,1206 +chrX 3377405 . C . . END=3377406 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,863 +chrX 3377407 . C . . END=3377409 GT:DP:GQ:MIN_DP:PL 0/0:41:82:41:0,82,1226 +chrX 3377410 . G . . END=3377419 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,738 +chrX 3377420 . G . . END=3377421 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,120,1800 +chrX 3377422 . C . . END=3377423 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,615 +chrX 3377424 . G . . END=3377424 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,120,1800 +chrX 3377425 . A . . END=3377432 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,739 +chrX 3377433 . G . . END=3377434 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,120,1800 +chrX 3377435 . G . . END=3377439 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,615 +chrX 3377440 . G . . END=3377441 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,120,1800 +chrX 3377442 . G . . END=3377444 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,506 +chrX 3377445 . A . . END=3377445 GT:DP:GQ:MIN_DP:PL 0/0:45:86:45:0,86,1355 +chrX 3377446 . G . . END=3377448 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,515 +chrX 3377449 . C . . END=3377450 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,120,1800 +chrX 3377451 . A . . END=3377451 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,551 +chrX 3377452 . C . . END=3377453 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,117,1755 +chrX 3377454 . G . . END=3377458 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,331 +chrX 3377459 . C . . END=3377459 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,120,1800 +chrX 3377460 . C . . END=3377465 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,263 +chrX 3377466 . A . . END=3377467 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,120,1800 +chrX 3377468 . G . . END=3377476 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,128 +chrX 3377477 . T . . END=3377477 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,120,1800 +chrX 3377478 . G . . END=3377483 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,0 +chrX 3377484 . C . . END=3377484 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 3377485 . T . . END=3377485 GT:DP:GQ:MIN_DP:PL 0/0:50:0:50:0,0,19 +chrX 3377486 . G . . END=3377486 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 3377487 . T . . END=3377489 GT:DP:GQ:MIN_DP:PL 0/0:50:0:50:0,0,0 +chrX 3377490 . CA C, 495.03 . AS_QUALapprox=|509|0;AS_VarDP=0|20|0;DP=27;QUALapprox=509;RAW_GT_COUNT=0,0,1;RAW_MQandDP=97200,27;VarDP=20 GT:AD:DP:GQ:PL:SB 1/1:0,20,0:20:60:509,60,0,509,60,509:0,0,13,7 +chrX 3377492 . A . . END=3377499 GT:DP:GQ:MIN_DP:PL 0/0:27:66:27:0,66,990 +chrX 3377500 . A . . END=3377500 GT:DP:GQ:MIN_DP:PL 0/0:31:9:31:0,9,788 +chrX 3377501 . A . . END=3377714 GT:DP:GQ:MIN_DP:PL 0/0:61:59:61:0,59,877 +chrX 3377715 . ATG A, 963.60 . AS_QUALapprox=|971|0;AS_VarDP=25|25|0;BaseQRankSum=0.091;DP=57;MQRankSum=0.000;QUALapprox=971;RAW_GT_COUNT=0,1,0;RAW_MQandDP=202969,57;ReadPosRankSum=1.000;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,25,0:50:99:0|1:3377715_ATG_A:971,0,955,1046,1031,2077:3377715:15,10,12,13 +chrX 3377718 . T . . END=3377734 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,112,1533 +chrX 3377735 . GTGTGTA G, 1050.60 . AS_QUALapprox=|1058|0;AS_VarDP=27|28|0;BaseQRankSum=0.070;DP=56;MQRankSum=0.000;QUALapprox=1058;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-0.084;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,28,0:55:99:0|1:3377715_ATG_A:1058,0,1044,1139,1129,2268:3377715:16,11,15,13 +chrX 3377742 . T . . END=3377851 GT:DP:GQ:MIN_DP:PL 0/0:62:29:59:0,29,1438 +chrX 3377852 . A . . END=3377852 GT:DP:GQ:MIN_DP:PL 0/0:64:0:64:0,0,1575 +chrX 3377853 . T . . END=3377927 GT:DP:GQ:MIN_DP:PL 0/0:71:77:71:0,77,1767 +chrX 3377928 . CGT C, 924.60 . AS_QUALapprox=|932|0;AS_VarDP=31|29|0;BaseQRankSum=-0.078;DP=69;MQRankSum=0.000;QUALapprox=932;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=0.872;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:31,29,0:60:99:932,0,996,1025,1084,2109:12,19,15,14 +chrX 3377931 . G . . END=3377989 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 3377990 . T C, 835.64 . AS_QUALapprox=|843|0;AS_VarDP=38|33|0;BaseQRankSum=-2.149;DP=75;MQRankSum=0.000;QUALapprox=843;RAW_GT_COUNT=0,1,0;RAW_MQandDP=270000,75;ReadPosRankSum=-0.790;VarDP=71 GT:AD:DP:GQ:PL:SB 0/1:38,33,0:71:99:843,0,1074,957,1174,2131:13,25,14,19 +chrX 3377991 . T . . END=3378028 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 3378029 . C T, 783.64 . AS_QUALapprox=|791|0;AS_VarDP=40|30|0;BaseQRankSum=-0.377;DP=74;MQRankSum=0.000;QUALapprox=791;RAW_GT_COUNT=0,1,0;RAW_MQandDP=266400,74;ReadPosRankSum=0.582;VarDP=70 GT:AD:DP:GQ:PL:SB 0/1:40,30,0:70:99:791,0,1121,910,1211,2122:19,21,10,20 +chrX 3378030 . T . . END=3378681 GT:DP:GQ:MIN_DP:PL 0/0:56:82:56:0,82,1306 +chrX 3378682 . A G, 473.64 . AS_QUALapprox=|481|0;AS_VarDP=29|19|0;BaseQRankSum=-0.060;DP=48;MQRankSum=0.000;QUALapprox=481;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=-0.338;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:29,19,0:48:99:481,0,834,569,891,1459:11,18,12,7 +chrX 3378683 . G . . END=3378815 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,101,1563 +chrX 3378816 . G C, 804.64 . AS_QUALapprox=|812|0;AS_VarDP=20|30|0;BaseQRankSum=-1.919;DP=50;MQRankSum=0.000;QUALapprox=812;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=-1.516;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:20,30,0:50:99:812,0,535,873,625,1498:8,12,15,15 +chrX 3378817 . A . . END=3379462 GT:DP:GQ:MIN_DP:PL 0/0:54:90:54:0,90,1216 +chrX 3379463 . A G, 829.64 . AS_QUALapprox=|837|0;AS_VarDP=24|31|0;BaseQRankSum=-0.292;DP=57;MQRankSum=0.000;QUALapprox=837;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=0.246;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:24,31,0:55:99:837,0,628,910,721,1630:13,11,20,11 +chrX 3379464 . T . . END=3379825 GT:DP:GQ:MIN_DP:PL 0/0:47:58:47:0,58,968 +chrX 3379826 . A AT, 437.60 . AS_QUALapprox=|445|0;AS_VarDP=21|20|0;BaseQRankSum=1.380;DP=45;MQRankSum=0.000;QUALapprox=445;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=0.653;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:21,20,0:41:99:445,0,478,508,538,1047:11,10,10,10 +chrX 3379827 . T . . END=3379835 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,114,1710 +chrX 3379836 . G . . END=3379836 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,1181 +chrX 3379837 . A . . END=3380179 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,104,1353 +chrX 3380180 . T C, 958.64 . AS_QUALapprox=|966|0;AS_VarDP=27|33|0;BaseQRankSum=3.575;DP=66;MQRankSum=0.000;QUALapprox=966;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=0.476;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:27,33,0:60:99:966,0,653,1047,752,1799:11,16,15,18 +chrX 3380181 . C . . END=3380778 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,105,1469 +chrX 3380779 . A G, 793.64 . AS_QUALapprox=|801|0;AS_VarDP=18|31|0;BaseQRankSum=-1.116;DP=53;MQRankSum=0.000;QUALapprox=801;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=-0.394;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:18,31,0:49:99:801,0,435,855,527,1381:7,11,13,18 +chrX 3380780 . T . . END=3380855 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,116,1444 +chrX 3380856 . T C, 820.64 . AS_QUALapprox=|828|0;AS_VarDP=25|22|0;BaseQRankSum=-2.643;DP=49;MQRankSum=0.000;QUALapprox=828;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=-0.660;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,22,0:47:99:0|1:3380856_T_C:828,0,973,903,1040,1943:3380856:9,16,11,11 +chrX 3380857 . G . . END=3380869 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,120,1800 +chrX 3380870 . C T, 818.64 . AS_QUALapprox=|826|0;AS_VarDP=29|22|0;BaseQRankSum=-0.837;DP=51;MQRankSum=0.000;QUALapprox=826;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-1.331;VarDP=51 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,22,0:51:99:0|1:3380856_T_C:826,0,1131,914,1197,2111:3380856:14,15,13,9 +chrX 3380871 . G . . END=3380892 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 3380893 . A G, 634.64 . AS_QUALapprox=|642|0;AS_VarDP=28|19|0;BaseQRankSum=-2.828;DP=47;MQRankSum=0.000;QUALapprox=642;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=-2.787;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,19,0:47:99:0|1:3380856_T_C:642,0,1098,727,1155,1882:3380856:14,14,10,9 +chrX 3380894 . T . . END=3380991 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 3380992 . G A, 427.64 . AS_QUALapprox=|435|0;AS_VarDP=39|20|0;BaseQRankSum=0.867;DP=61;MQRankSum=0.000;QUALapprox=435;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-1.114;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:39,20,0:59:99:435,0,939,550,998,1549:20,19,11,9 +chrX 3380993 . T . . END=3381684 GT:DP:GQ:MIN_DP:PL 0/0:61:35:52:0,35,1330 +chrX 3381685 . A G, 854.64 . AS_QUALapprox=|862|0;AS_VarDP=27|32|0;BaseQRankSum=0.754;DP=61;MQRankSum=0.000;QUALapprox=862;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-0.723;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:27,32,0:59:99:862,0,663,943,759,1701:18,9,17,15 +chrX 3381686 . G . . END=3381944 GT:DP:GQ:MIN_DP:PL 0/0:50:34:46:0,34,1279 +chrX 3381945 . C . . END=3381946 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,872 +chrX 3381947 . C CAAA, 691.60 . AS_QUALapprox=|699|0;AS_VarDP=10|25|0;BaseQRankSum=-1.603;DP=55;MQRankSum=-1.090;QUALapprox=699;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190509,55;ReadPosRankSum=-3.112;VarDP=35 GT:AD:DP:GQ:PL:SB 0/1:10,25,0:35:99:699,0,257,728,331,1059:8,2,10,15 +chrX 3381948 . A . . END=3381966 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 3381967 . G . . END=3381967 GT:DP:GQ:MIN_DP:PL 0/0:53:0:53:0,0,1334 +chrX 3381968 . A . . END=3382253 GT:DP:GQ:MIN_DP:PL 0/0:51:22:46:0,22,1315 +chrX 3382254 . G A, 974.64 . AS_QUALapprox=|982|0;AS_VarDP=19|34|0;BaseQRankSum=-0.051;DP=58;MQRankSum=0.000;QUALapprox=982;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-0.575;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:19,34,0:53:99:982,0,466,1039,569,1607:13,6,12,22 +chrX 3382255 . G . . END=3382291 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 3382292 . AAAG A, 1128.60 . AS_QUALapprox=|1136|0;AS_VarDP=27|29|0;BaseQRankSum=-0.819;DP=56;MQRankSum=0.000;QUALapprox=1136;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=0.107;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,29,0:56:99:0|1:3382292_AAAG_A:1136,0,1046,1218,1134,2351:3382292:18,9,18,11 +chrX 3382296 . T TC, 1128.60 . AS_QUALapprox=|1136|0;AS_VarDP=27|29|0;BaseQRankSum=-1.318;DP=56;MQRankSum=0.000;QUALapprox=1136;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-0.074;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,29,0:56:99:0|1:3382292_AAAG_A:1136,0,1046,1218,1134,2351:3382292:18,9,18,11 +chrX 3382297 . T . . END=3382435 GT:DP:GQ:MIN_DP:PL 0/0:57:80:57:0,80,1449 +chrX 3382436 . C A, 496.64 . AS_QUALapprox=|504|0;AS_VarDP=27|20|0;BaseQRankSum=-1.138;DP=47;MQRankSum=0.000;QUALapprox=504;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=-2.174;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:27,20,0:47:99:504,0,752,585,813,1398:9,18,8,12 +chrX 3382437 . C . . END=3382566 GT:DP:GQ:MIN_DP:PL 0/0:50:98:50:0,98,1453 +chrX 3382567 . G A, 719.64 . AS_QUALapprox=|727|0;AS_VarDP=36|28|0;BaseQRankSum=0.619;DP=65;MQRankSum=-1.102;QUALapprox=727;RAW_GT_COUNT=0,1,0;RAW_MQandDP=233536,65;ReadPosRankSum=-0.589;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:36,28,0:64:99:727,0,945,834,1029,1863:18,18,16,12 +chrX 3382568 . T . . END=3382917 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,113,1544 +chrX 3382918 . A G, 729.64 . AS_QUALapprox=|737|0;AS_VarDP=23|26|0;BaseQRankSum=1.075;DP=49;MQRankSum=0.000;QUALapprox=737;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=0.361;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:23,26,0:49:99:737,0,597,806,676,1481:12,11,10,16 +chrX 3382919 . T . . END=3385095 GT:DP:GQ:MIN_DP:PL 0/0:53:59:53:0,59,1002 +chrX 3385096 . T C, 744.64 . AS_QUALapprox=|752|0;AS_VarDP=27|30|0;BaseQRankSum=-1.333;DP=60;MQRankSum=0.000;QUALapprox=752;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=-0.352;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:27,30,0:57:99:752,0,713,832,803,1635:15,12,20,10 +chrX 3385097 . G . . END=3385370 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 3385371 . G A, 960.64 . AS_QUALapprox=|968|0;AS_VarDP=23|33|0;BaseQRankSum=2.236;DP=59;MQRankSum=0.000;QUALapprox=968;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-0.383;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:23,33,0:56:99:968,0,565,1037,664,1701:11,12,14,19 +chrX 3385372 . T . . END=3385505 GT:DP:GQ:MIN_DP:PL 0/0:45:84:45:0,84,1235 +chrX 3385506 . T A, 570.64 . AS_QUALapprox=|578|0;AS_VarDP=19|20|0;BaseQRankSum=2.165;DP=40;MQRankSum=0.000;QUALapprox=578;RAW_GT_COUNT=0,1,0;RAW_MQandDP=144000,40;ReadPosRankSum=-0.576;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:19,20,0:39:99:578,0,502,635,562,1197:8,11,7,13 +chrX 3385507 . A . . END=3385677 GT:DP:GQ:MIN_DP:PL 0/0:44:85:44:0,85,1191 +chrX 3385678 . T TGATA, 700.60 . AS_QUALapprox=|708|0;AS_VarDP=23|19|0;BaseQRankSum=-1.523;DP=42;MQRankSum=0.000;QUALapprox=708;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151200,42;ReadPosRankSum=-1.289;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:23,19,0:42:99:708,0,897,777,955,1732:10,13,9,10 +chrX 3385679 . G . . END=3385686 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,120,1800 +chrX 3385687 . A . . END=3385687 GT:DP:GQ:MIN_DP:PL 0/0:46:9:46:0,9,1251 +chrX 3385688 . A . . END=3385689 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,117,1755 +chrX 3385690 . G . . END=3385690 GT:DP:GQ:MIN_DP:PL 0/0:45:6:45:0,6,1196 +chrX 3385691 . G . . END=3386721 GT:DP:GQ:MIN_DP:PL 0/0:50:66:50:0,66,1286 +chrX 3386722 . C T, 782.64 . AS_QUALapprox=|790|0;AS_VarDP=22|29|0;BaseQRankSum=-0.844;DP=52;MQRankSum=0.000;QUALapprox=790;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=-0.219;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:22,29,0:51:99:790,0,592,856,679,1535:11,11,18,11 +chrX 3386723 . T . . END=3386941 GT:DP:GQ:MIN_DP:PL 0/0:49:95:49:0,95,1351 +chrX 3386942 . C T, 827.64 . AS_QUALapprox=|835|0;AS_VarDP=21|30|0;BaseQRankSum=0.968;DP=51;MQRankSum=0.000;QUALapprox=835;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=2.020;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:21,30,0:51:99:835,0,511,898,601,1499:8,13,17,13 +chrX 3386943 . G . . END=3387413 GT:DP:GQ:MIN_DP:PL 0/0:57:91:57:0,91,1524 +chrX 3387414 . A ATG, 941.60 . AS_QUALapprox=|949|0;AS_VarDP=30|30|0;BaseQRankSum=-0.557;DP=67;MQRankSum=0.000;QUALapprox=949;RAW_GT_COUNT=0,1,0;RAW_MQandDP=239553,67;ReadPosRankSum=-0.377;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:30,30,0:60:99:949,0,990,1039,1080,2119:14,16,16,14 +chrX 3387415 . T . . END=3387542 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,119,1623 +chrX 3387543 . GTA G, 687.60 . AS_QUALapprox=|695|0;AS_VarDP=30|19|0;BaseQRankSum=-0.015;DP=54;MQRankSum=0.838;QUALapprox=695;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190408,54;ReadPosRankSum=0.137;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:30,19,0:49:99:0|1:3387543_GTA_G:695,0,1166,787,1223,2010:3387543:15,15,9,10 +chrX 3387546 . T . . END=3387565 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 3387566 . T C, 757.64 . AS_QUALapprox=|765|0;AS_VarDP=31|22|0;BaseQRankSum=-2.178;DP=57;MQRankSum=0.881;QUALapprox=765;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201208,57;ReadPosRankSum=-1.553;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:31,22,0:53:99:0|1:3387543_GTA_G:765,0,1175,858,1241,2099:3387543:18,13,11,11 +chrX 3387567 . G . . END=3387646 GT:DP:GQ:MIN_DP:PL 0/0:59:28:59:0,28,1451 +chrX 3387647 . A . . END=3387647 GT:DP:GQ:MIN_DP:PL 0/0:60:0:60:0,0,1431 +chrX 3387648 . T . . END=3387668 GT:DP:GQ:MIN_DP:PL 0/0:60:76:60:0,76,1600 +chrX 3387669 . A ATG, 704.60 . AS_QUALapprox=|712|0;AS_VarDP=21|19|0;BaseQRankSum=-1.291;DP=46;MQRankSum=0.000;QUALapprox=712;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=0.949;VarDP=40 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,19,0:40:99:0|1:3387669_A_ATG:712,0,791,775,848,1623:3387669:14,7,13,6 +chrX 3387670 . T . . END=3387693 GT:DP:GQ:MIN_DP:PL 0/0:42:90:42:0,90,1350 +chrX 3387694 . T C, 719.64 . AS_QUALapprox=|727|0;AS_VarDP=22|20|0;BaseQRankSum=-2.865;DP=43;MQRankSum=0.000;QUALapprox=727;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154800,43;ReadPosRankSum=-0.824;VarDP=42 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,20,0:42:99:0|1:3387669_A_ATG:727,0,807,793,867,1661:3387669:15,7,15,5 +chrX 3387695 . A . . END=3387782 GT:DP:GQ:MIN_DP:PL 0/0:53:71:53:0,71,1328 +chrX 3387783 . G A, 728.64 . AS_QUALapprox=|736|0;AS_VarDP=20|21|0;BaseQRankSum=-1.827;DP=43;MQRankSum=0.000;QUALapprox=736;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154800,43;ReadPosRankSum=1.096;VarDP=41 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:20,21,0:41:99:0|1:3387783_G_A:736,0,716,796,778,1574:3387783:16,4,12,9 +chrX 3387784 . T . . END=3387800 GT:DP:GQ:MIN_DP:PL 0/0:41:92:41:0,92,1209 +chrX 3387801 . ATG A, 691.60 . AS_QUALapprox=|699|0;AS_VarDP=25|20|0;BaseQRankSum=0.450;DP=45;MQRankSum=0.939;QUALapprox=699;RAW_GT_COUNT=0,1,0;RAW_MQandDP=160000,45;ReadPosRankSum=1.355;VarDP=45 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,20,0:45:99:0|1:3387783_G_A:699,0,901,774,961,1735:3387783:16,9,11,9 +chrX 3387804 . T . . END=3387820 GT:DP:GQ:MIN_DP:PL 0/0:43:37:42:0,37,1040 +chrX 3387821 . T G, 755.64 . AS_QUALapprox=|763|0;AS_VarDP=25|22|0;BaseQRankSum=1.601;DP=48;MQRankSum=0.981;QUALapprox=763;RAW_GT_COUNT=0,1,0;RAW_MQandDP=170800,48;ReadPosRankSum=0.284;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,22,0:47:99:0|1:3387783_G_A:763,0,874,838,940,1778:3387783:16,9,14,8 +chrX 3387822 . T . . END=3388066 GT:DP:GQ:MIN_DP:PL 0/0:55:56:55:0,56,1375 +chrX 3388067 . T C, 778.64 . AS_QUALapprox=|786|0;AS_VarDP=38|31|0;BaseQRankSum=-1.319;DP=73;MQRankSum=0.000;QUALapprox=786;RAW_GT_COUNT=0,1,0;RAW_MQandDP=262800,73;ReadPosRankSum=0.416;VarDP=69 GT:AD:DP:GQ:PL:SB 0/1:38,31,0:69:99:786,0,1059,900,1151,2051:17,21,14,17 +chrX 3388068 . C . . END=3389323 GT:DP:GQ:MIN_DP:PL 0/0:66:93:66:0,93,1712 +chrX 3389324 . C T, 526.64 . AS_QUALapprox=|534|0;AS_VarDP=31|21|0;BaseQRankSum=0.041;DP=53;MQRankSum=0.000;QUALapprox=534;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=-0.047;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:31,21,0:52:99:534,0,861,627,924,1551:16,15,14,7 +chrX 3389325 . T . . END=3389753 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,109,1673 +chrX 3389754 . A G, 860.64 . AS_QUALapprox=|868|0;AS_VarDP=18|30|0;BaseQRankSum=-1.346;DP=49;MQRankSum=0.000;QUALapprox=868;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=0.852;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:18,30,0:48:99:868,0,481,922,571,1493:10,8,17,13 +chrX 3389755 . T . . END=3390045 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,113,1459 +chrX 3390046 . T C, 730.64 . AS_QUALapprox=|738|0;AS_VarDP=29|27|0;BaseQRankSum=0.357;DP=58;MQRankSum=0.000;QUALapprox=738;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-0.763;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:29,27,0:56:99:738,0,784,824,865,1690:16,13,18,9 +chrX 3390047 . A . . END=3390172 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 3390173 . A G, 987.64 . AS_QUALapprox=|995|0;AS_VarDP=22|35|0;BaseQRankSum=-1.823;DP=59;MQRankSum=0.000;QUALapprox=995;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=1.295;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:22,35,0:57:99:995,0,593,1061,699,1759:9,13,16,19 +chrX 3390174 . C . . END=3390717 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,108,1620 +chrX 3390718 . T A, 506.64 . AS_QUALapprox=|514|0;AS_VarDP=23|19|0;BaseQRankSum=0.270;DP=43;MQRankSum=0.000;QUALapprox=514;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154800,43;ReadPosRankSum=-1.820;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:23,19,0:42:99:514,0,643,583,700,1284:11,12,12,7 +chrX 3390719 . G . . END=3390830 GT:DP:GQ:MIN_DP:PL 0/0:37:73:37:0,73,1048 +chrX 3390831 . G A, 414.64 . AS_QUALapprox=|422|0;AS_VarDP=18|15|0;BaseQRankSum=0.000;DP=34;MQRankSum=0.000;QUALapprox=422;RAW_GT_COUNT=0,1,0;RAW_MQandDP=122400,34;ReadPosRankSum=0.271;VarDP=33 GT:AD:DP:GQ:PL:SB 0/1:18,15,0:33:99:422,0,526,476,572,1048:9,9,6,9 +chrX 3390832 . T . . END=3391176 GT:DP:GQ:MIN_DP:PL 0/0:54:71:54:0,71,1009 +chrX 3391177 . G C, 769.64 . AS_QUALapprox=|777|0;AS_VarDP=41|31|0;BaseQRankSum=0.162;DP=74;MQRankSum=0.000;QUALapprox=777;RAW_GT_COUNT=0,1,0;RAW_MQandDP=266400,74;ReadPosRankSum=0.324;VarDP=72 GT:AD:DP:GQ:PL:SB 0/1:41,31,0:72:99:777,0,1094,899,1187,2086:22,19,19,12 +chrX 3391178 . T . . END=3391722 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 3391723 . A G, 871.64 . AS_QUALapprox=|879|0;AS_VarDP=30|34|0;BaseQRankSum=0.152;DP=68;MQRankSum=0.000;QUALapprox=879;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=-1.548;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:30,34,0:64:99:879,0,765,969,866,1835:13,17,19,15 +chrX 3391724 . A . . END=3391900 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 3391901 . T G, 863.64 . AS_QUALapprox=|871|0;AS_VarDP=29|33|0;BaseQRankSum=1.401;DP=63;MQRankSum=0.000;QUALapprox=871;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=-0.155;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:29,33,0:62:99:871,0,678,957,776,1733:18,11,16,17 +chrX 3391902 . C . . END=3392001 GT:DP:GQ:MIN_DP:PL 0/0:48:41:48:0,41,849 +chrX 3392002 . T . . END=3392007 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,705 +chrX 3392008 . A . . END=3392296 GT:DP:GQ:MIN_DP:PL 0/0:51:63:51:0,63,1080 +chrX 3392297 . C T, 802.64 . AS_QUALapprox=|810|0;AS_VarDP=20|31|0;BaseQRankSum=-0.669;DP=52;MQRankSum=0.000;QUALapprox=810;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=-0.512;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:20,31,0:51:99:810,0,498,870,590,1459:5,15,12,19 +chrX 3392298 . A . . END=3392767 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,99,1800 +chrX 3392768 . C G, 850.64 . AS_QUALapprox=|858|0;AS_VarDP=31|32|0;BaseQRankSum=-0.726;DP=65;MQRankSum=0.000;QUALapprox=858;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=0.468;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:31,32,0:63:99:858,0,858,951,954,1906:12,19,18,14 +chrX 3392769 . C . . END=3392837 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 3392838 . T A, 896.64 . AS_QUALapprox=|904|0;AS_VarDP=30|34|0;BaseQRankSum=-0.719;DP=66;MQRankSum=0.000;QUALapprox=904;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=-1.480;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:30,34,0:64:99:904,0,796,994,897,1891:13,17,17,17 +chrX 3392839 . T . . END=3393081 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 3393082 . A C, 992.64 . AS_QUALapprox=|1000|0;AS_VarDP=35|37|0;BaseQRankSum=0.416;DP=74;MQRankSum=0.000;QUALapprox=1000;RAW_GT_COUNT=0,1,0;RAW_MQandDP=266400,74;ReadPosRankSum=-0.147;VarDP=72 GT:AD:DP:GQ:PL:SB 0/1:35,37,0:72:99:1000,0,911,1105,1022,2127:19,16,12,25 +chrX 3393083 . A . . END=3393437 GT:DP:GQ:MIN_DP:PL 0/0:70:72:70:0,72,1642 +chrX 3393438 . G A, 963.64 . AS_QUALapprox=|971|0;AS_VarDP=34|36|0;BaseQRankSum=-0.183;DP=71;MQRankSum=0.000;QUALapprox=971;RAW_GT_COUNT=0,1,0;RAW_MQandDP=255600,71;ReadPosRankSum=-2.181;VarDP=70 GT:AD:DP:GQ:PL:SB 0/1:34,36,0:70:99:971,0,911,1073,1020,2093:15,19,18,18 +chrX 3393439 . C . . END=3393679 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 3393680 . A G, 723.64 . AS_QUALapprox=|731|0;AS_VarDP=28|26|0;BaseQRankSum=0.545;DP=57;MQRankSum=0.000;QUALapprox=731;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-0.277;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:28,26,0:54:99:731,0,790,816,869,1684:13,15,11,15 +chrX 3393681 . G . . END=3394370 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,118,1744 +chrX 3394371 . C T, 1008.64 . AS_QUALapprox=|1016|0;AS_VarDP=25|35|0;BaseQRankSum=0.877;DP=61;MQRankSum=0.000;QUALapprox=1016;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=1.372;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:25,35,0:60:99:1016,0,658,1091,764,1855:12,13,17,18 +chrX 3394372 . C . . END=3394892 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,102,1281 +chrX 3394893 . G T, 846.64 . AS_QUALapprox=|854|0;AS_VarDP=26|30|0;BaseQRankSum=0.649;DP=59;MQRankSum=0.000;QUALapprox=854;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=0.378;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:26,30,0:56:99:854,0,705,932,796,1728:12,14,19,11 +chrX 3394894 . C . . END=3395822 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,112,1800 +chrX 3395823 . T C, 777.64 . AS_QUALapprox=|785|0;AS_VarDP=36|30|0;BaseQRankSum=-0.279;DP=67;MQRankSum=0.000;QUALapprox=785;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=-0.618;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:36,30,0:66:99:785,0,973,893,1063,1956:15,21,18,12 +chrX 3395824 . T . . END=3396303 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,109,1459 +chrX 3396304 . G A, 491.64 . AS_QUALapprox=|499|0;AS_VarDP=32|20|0;BaseQRankSum=-1.066;DP=52;MQRankSum=0.000;QUALapprox=499;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=-0.263;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:32,20,0:52:99:499,0,923,595,983,1578:22,10,13,7 +chrX 3396305 . G . . END=3396422 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,118,1603 +chrX 3396423 . C T, 790.64 . AS_QUALapprox=|798|0;AS_VarDP=38|30|0;BaseQRankSum=-0.011;DP=70;MQRankSum=0.000;QUALapprox=798;RAW_GT_COUNT=0,1,0;RAW_MQandDP=252000,70;ReadPosRankSum=-0.958;VarDP=68 GT:AD:DP:GQ:PL:SB 0/1:38,30,0:68:99:798,0,1065,913,1155,2068:15,23,13,17 +chrX 3396424 . T . . END=3396444 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 3396445 . C T, 702.64 . AS_QUALapprox=|710|0;AS_VarDP=38|27|0;BaseQRankSum=1.704;DP=71;MQRankSum=0.000;QUALapprox=710;RAW_GT_COUNT=0,1,0;RAW_MQandDP=255600,71;ReadPosRankSum=-1.299;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:38,27,0:65:99:710,0,992,823,1072,1895:15,23,10,17 +chrX 3396446 . G . . END=3396461 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 3396462 . T TG, 688.60 . AS_QUALapprox=|696|0;AS_VarDP=37|28|0;BaseQRankSum=0.560;DP=68;MQRankSum=0.000;QUALapprox=696;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=0.404;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:37,28,0:65:99:696,0,1018,808,1101,1909:14,23,12,16 +chrX 3396463 . G . . END=3397323 GT:DP:GQ:MIN_DP:PL 0/0:60:93:60:0,93,1473 +chrX 3397324 . C A, 656.64 . AS_QUALapprox=|664|0;AS_VarDP=35|25|0;BaseQRankSum=1.507;DP=63;MQRankSum=0.000;QUALapprox=664;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=0.818;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:35,25,0:60:99:664,0,962,769,1036,1806:17,18,13,12 +chrX 3397325 . T . . END=3397881 GT:DP:GQ:MIN_DP:PL 0/0:58:96:58:0,96,1405 +chrX 3397882 . G A, 559.64 . AS_QUALapprox=|567|0;AS_VarDP=23|20|0;BaseQRankSum=2.446;DP=45;MQRankSum=0.000;QUALapprox=567;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=0.901;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:23,20,0:43:99:567,0,565,635,625,1260:13,10,10,10 +chrX 3397883 . T . . END=3397985 GT:DP:GQ:MIN_DP:PL 0/0:52:83:52:0,83,1345 +chrX 3397986 . G A, 755.64 . AS_QUALapprox=|763|0;AS_VarDP=22|28|0;BaseQRankSum=-0.268;DP=51;MQRankSum=0.000;QUALapprox=763;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=0.909;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:22,28,0:50:99:763,0,574,829,658,1488:9,13,11,17 +chrX 3397987 . G . . END=3398448 GT:DP:GQ:MIN_DP:PL 0/0:57:67:57:0,67,1206 +chrX 3398449 . A G, 1084.64 . AS_QUALapprox=|1092|0;AS_VarDP=21|40|0;BaseQRankSum=-2.470;DP=61;MQRankSum=0.000;QUALapprox=1092;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=1.238;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:21,40,0:61:99:1092,0,547,1155,667,1822:15,6,22,18 +chrX 3398450 . G . . END=3398809 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,105,1766 +chrX 3398810 . A G, 665.64 . AS_QUALapprox=|673|0;AS_VarDP=24|26|0;BaseQRankSum=-1.948;DP=50;MQRankSum=0.000;QUALapprox=673;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=-1.059;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:24,26,0:50:99:673,0,663,745,741,1486:12,12,11,15 +chrX 3398811 . G . . END=3398979 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,119,1613 +chrX 3398980 . G GTT, 2220.03 . AS_QUALapprox=|2234|0;AS_VarDP=0|50|0;DP=51;QUALapprox=2234;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:2234,150,0,2234,151,2234:0,0,20,30 +chrX 3398981 . A . . END=3401405 GT:DP:GQ:MIN_DP:PL 0/0:53:58:53:0,58,1071 +chrX 3401406 . T C, 902.64 . AS_QUALapprox=|910|0;AS_VarDP=29|25|0;BaseQRankSum=-0.308;DP=54;MQRankSum=0.000;QUALapprox=910;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=1.614;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:29,25,0:54:99:910,0,1040,998,1115,2113:13,16,11,14 +chrX 3401407 . T . . END=3401411 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 3401412 . CT C,CTT, 1457.02 . AS_QUALapprox=|920|557|0;AS_VarDP=0|25|22|0;DP=52;QUALapprox=1474;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=47 GT:AD:DP:GQ:PL:SB 1/2:0,25,22,0:47:99:1474,554,976,983,0,917,1543,833,997,1762:0,0,23,24 +chrX 3401414 . T . . END=3406979 GT:DP:GQ:MIN_DP:PL 0/0:50:31:49:0,31,1021 +chrX 3406980 . C T, 814.64 . AS_QUALapprox=|822|0;AS_VarDP=20|29|0;BaseQRankSum=1.494;DP=52;MQRankSum=0.000;QUALapprox=822;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=1.099;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:20,29,0:49:99:822,0,458,881,545,1426:8,12,17,12 +chrX 3406981 . T . . END=3408900 GT:DP:GQ:MIN_DP:PL 0/0:61:64:61:0,64,1269 +chrX 3408901 . TACAC T,TACACAC, 961.02 . AS_QUALapprox=|692|302|0;AS_VarDP=0|18|11|0;DP=47;QUALapprox=978;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;VarDP=29 GT:AD:DP:GQ:PL:SB 1/2:0,18,11,0:29:99:978,286,449,713,0,676,1005,408,715,1097:0,0,18,11 +chrX 3408906 . A . . END=3408948 GT:DP:GQ:MIN_DP:PL 0/0:49:46:49:0,46,1422 +chrX 3408949 . G . . END=3408949 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,1031 +chrX 3408950 . A . . END=3408951 GT:DP:GQ:MIN_DP:PL 0/0:44:20:43:0,20,1135 +chrX 3408952 . C . . END=3408952 GT:DP:GQ:MIN_DP:PL 0/0:39:8:39:0,8,1047 +chrX 3408953 . C . . END=3409916 GT:DP:GQ:MIN_DP:PL 0/0:38:36:37:0,36,955 +chrX 3409917 . A C, 749.64 . AS_QUALapprox=|757|0;AS_VarDP=26|28|0;BaseQRankSum=0.534;DP=54;MQRankSum=0.000;QUALapprox=757;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=0.182;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:26,28,0:54:99:757,0,662,834,746,1580:11,15,16,12 +chrX 3409918 . C . . END=3411232 GT:DP:GQ:MIN_DP:PL 0/0:57:72:57:0,72,1357 +chrX 3411233 . G A, 844.64 . AS_QUALapprox=|852|0;AS_VarDP=24|31|0;BaseQRankSum=-0.582;DP=55;MQRankSum=-0.843;QUALapprox=852;RAW_GT_COUNT=0,1,0;RAW_MQandDP=197649,55;ReadPosRankSum=1.036;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:24,31,0:55:99:852,0,624,924,717,1641:9,15,12,19 +chrX 3411234 . G . . END=3411551 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,118,1612 +chrX 3411552 . C T, 714.64 . AS_QUALapprox=|722|0;AS_VarDP=22|27|0;BaseQRankSum=-0.933;DP=52;MQRankSum=-0.339;QUALapprox=722;RAW_GT_COUNT=0,1,0;RAW_MQandDP=185406,52;ReadPosRankSum=-0.211;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:22,27,0:49:99:722,0,571,787,652,1440:10,12,14,13 +chrX 3411553 . G . . END=3413803 GT:DP:GQ:MIN_DP:PL 0/0:55:79:55:0,79,1067 +chrX 3413804 . G A, 879.64 . AS_QUALapprox=|887|0;AS_VarDP=25|31|0;BaseQRankSum=2.472;DP=57;MQRankSum=0.627;QUALapprox=887;RAW_GT_COUNT=0,1,0;RAW_MQandDP=155327,57;ReadPosRankSum=0.651;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:25,31,0:56:99:887,0,620,962,714,1676:13,12,15,16 +chrX 3413805 . C . . END=3414185 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,107,1478 +chrX 3414186 . C T, 542.64 . AS_QUALapprox=|550|0;AS_VarDP=30|23|0;BaseQRankSum=-3.257;DP=53;MQRankSum=0.000;QUALapprox=550;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=-0.314;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:30,23,0:53:99:550,0,874,640,943,1583:11,19,12,11 +chrX 3414187 . T . . END=3414746 GT:DP:GQ:MIN_DP:PL 0/0:55:77:55:0,77,1261 +chrX 3414747 . G A, 1021.64 . AS_QUALapprox=|1029|0;AS_VarDP=22|37|0;BaseQRankSum=0.500;DP=61;MQRankSum=0.000;QUALapprox=1029;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=0.855;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:22,37,0:59:99:1029,0,527,1095,638,1733:13,9,24,13 +chrX 3414748 . G . . END=3414918 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 3414919 . A T, 1966.06 . AS_QUALapprox=|1980|0;AS_VarDP=0|60|0;DP=63;QUALapprox=1980;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:1980,180,0,1980,180,1980:0,0,32,28 +chrX 3414920 . G . . END=3415013 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 3415014 . A G, 1975.06 . AS_QUALapprox=|1989|0;AS_VarDP=0|61|0;DP=64;QUALapprox=1989;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=61 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:1989,183,0,1989,183,1989:0,0,33,28 +chrX 3415015 . G . . END=3415780 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 3415781 . C G, 878.64 . AS_QUALapprox=|886|0;AS_VarDP=30|32|0;BaseQRankSum=-0.244;DP=62;MQRankSum=0.000;QUALapprox=886;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=-0.550;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:30,32,0:62:99:886,0,811,976,908,1884:14,16,17,15 +chrX 3415782 . A . . END=3415909 GT:DP:GQ:MIN_DP:PL 0/0:75:99:75:0,120,1800 +chrX 3415910 . A G, 1134.64 . AS_QUALapprox=|1142|0;AS_VarDP=29|42|0;BaseQRankSum=-1.150;DP=75;MQRankSum=0.000;QUALapprox=1142;RAW_GT_COUNT=0,1,0;RAW_MQandDP=270000,75;ReadPosRankSum=0.544;VarDP=71 GT:AD:DP:GQ:PL:SB 0/1:29,42,0:71:99:1142,0,750,1229,876,2105:11,18,28,14 +chrX 3415911 . T . . END=3415973 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 3415974 . T C, 2099.06 . AS_QUALapprox=|2113|0;AS_VarDP=0|68|0;DP=69;QUALapprox=2113;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=68 GT:AD:DP:GQ:PL:SB 1/1:0,68,0:68:99:2113,203,0,2113,203,2113:0,0,38,30 +chrX 3415975 . C . . END=3416384 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,110,1424 +chrX 3416385 . A G, 876.64 . AS_QUALapprox=|884|0;AS_VarDP=37|33|0;BaseQRankSum=-0.528;DP=72;MQRankSum=0.000;QUALapprox=884;RAW_GT_COUNT=0,1,0;RAW_MQandDP=259200,72;ReadPosRankSum=0.100;VarDP=70 GT:AD:DP:GQ:PL:SB 0/1:37,33,0:70:99:884,0,1032,996,1132,2127:22,15,20,13 +chrX 3416386 . G . . END=3416461 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 3416462 . CTG C, 634.60 . AS_QUALapprox=|642|0;AS_VarDP=27|22|0;BaseQRankSum=-0.627;DP=65;MQRankSum=0.000;QUALapprox=642;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=1.107;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:27,22,0:49:99:642,0,805,723,872,1595:14,13,9,13 +chrX 3416465 . T . . END=3416522 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 3416523 . G A, 1832.06 . AS_QUALapprox=|1846|0;AS_VarDP=1|54|0;BaseQRankSum=4.402;DP=56;MQRankSum=0.000;QUALapprox=1846;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;ReadPosRankSum=0.315;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:1,54,0:55:99:1846,155,0,1848,162,1855:1,0,24,30 +chrX 3416524 . G . . END=3417212 GT:DP:GQ:MIN_DP:PL 0/0:45:62:44:0,62,1002 +chrX 3417213 . TCTTCCTTCCTTCCTTCCTTC T,TCTTCCTTCCTTCCTTCCTTCCTTCCTTC, 1127.02 . AS_QUALapprox=|711|460|0;AS_VarDP=0|18|11|0;DP=47;QUALapprox=1144;RAW_GT_COUNT=0,0,1;RAW_MQandDP=167200,47;VarDP=29 GT:AD:DP:GQ:PL:SB 1/2:0,18,11,0:29:99:1144,433,686,716,0,684,1170,601,738,1313:0,0,12,17 +chrX 3417234 . C . . END=3417261 GT:DP:GQ:MIN_DP:PL 0/0:46:37:44:0,37,1269 +chrX 3417262 . A . . END=3417262 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,987 +chrX 3417263 . T . . END=3417806 GT:DP:GQ:MIN_DP:PL 0/0:52:63:52:0,63,1305 +chrX 3417807 . C A, 636.64 . AS_QUALapprox=|644|0;AS_VarDP=26|24|0;BaseQRankSum=-1.476;DP=50;MQRankSum=0.000;QUALapprox=644;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=0.087;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:26,24,0:50:99:644,0,744,722,816,1538:15,11,13,11 +chrX 3417808 . T . . END=3418817 GT:DP:GQ:MIN_DP:PL 0/0:49:53:49:0,53,992 +chrX 3418818 . G A, 1538.06 . AS_QUALapprox=|1552|0;AS_VarDP=0|47|0;DP=50;QUALapprox=1552;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1552,140,0,1552,140,1552:0,0,25,22 +chrX 3418819 . C . . END=3418851 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,120,1800 +chrX 3418852 . C T, 1550.06 . AS_QUALapprox=|1564|0;AS_VarDP=0|47|0;DP=50;QUALapprox=1564;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1564,141,0,1564,141,1564:0,0,26,21 +chrX 3418853 . A . . END=3418954 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,109,1468 +chrX 3418955 . A C, 511.64 . AS_QUALapprox=|519|0;AS_VarDP=25|20|0;BaseQRankSum=-1.144;DP=47;MQRankSum=0.000;QUALapprox=519;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=-0.114;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:25,20,0:45:99:519,0,714,595,774,1368:9,16,7,13 +chrX 3418956 . C . . END=3419369 GT:DP:GQ:MIN_DP:PL 0/0:47:49:47:0,49,1126 +chrX 3419370 . C CAAAAAA,CAAAAAAAA, 1844.02 . AS_QUALapprox=|880|1604|0;AS_VarDP=0|10|30|0;DP=49;QUALapprox=1861;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=40 GT:AD:DP:GQ:PL:SB 1/2:0,10,30,0:40:99:1861,1097,981,385,0,257,1685,1074,377,1610:0,0,21,19 +chrX 3419371 . A . . END=3419628 GT:DP:GQ:MIN_DP:PL 0/0:53:30:50:0,30,986 +chrX 3419629 . G A, 427.64 . AS_QUALapprox=|435|0;AS_VarDP=14|16|0;BaseQRankSum=-0.775;DP=33;MQRankSum=0.000;QUALapprox=435;RAW_GT_COUNT=0,1,0;RAW_MQandDP=118800,33;ReadPosRankSum=0.957;VarDP=30 GT:AD:DP:GQ:PL:SB 0/1:14,16,0:30:99:435,0,372,477,420,896:7,7,8,8 +chrX 3419630 . C . . END=3419974 GT:DP:GQ:MIN_DP:PL 0/0:39:77:39:0,77,1032 +chrX 3419975 . C T, 884.64 . AS_QUALapprox=|892|0;AS_VarDP=21|34|0;BaseQRankSum=-1.499;DP=57;MQRankSum=0.000;QUALapprox=892;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-1.126;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:21,34,0:55:99:892,0,535,955,637,1592:15,6,18,16 +chrX 3419976 . G . . END=3420265 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,105,1325 +chrX 3420266 . T C, 737.64 . AS_QUALapprox=|745|0;AS_VarDP=19|27|0;BaseQRankSum=-1.712;DP=47;MQRankSum=-0.795;QUALapprox=745;RAW_GT_COUNT=0,1,0;RAW_MQandDP=168409,47;ReadPosRankSum=0.736;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:19,27,0:46:99:745,0,523,803,603,1406:13,6,9,18 +chrX 3420267 . G . . END=3420304 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,113,1594 +chrX 3420305 . T C, 777.64 . AS_QUALapprox=|785|0;AS_VarDP=22|29|0;BaseQRankSum=-0.048;DP=53;MQRankSum=0.000;QUALapprox=785;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=1.770;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:22,29,0:51:99:785,0,567,851,653,1504:13,9,12,17 +chrX 3420306 . G . . END=3420429 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 3420430 . A G, 571.64 . AS_QUALapprox=|579|0;AS_VarDP=31|22|0;BaseQRankSum=1.475;DP=57;MQRankSum=0.000;QUALapprox=579;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-0.957;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:31,22,0:53:99:579,0,859,673,924,1597:10,21,13,9 +chrX 3420431 . C . . END=3420850 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,114,1484 +chrX 3420851 . C T, 718.64 . AS_QUALapprox=|726|0;AS_VarDP=32|27|0;BaseQRankSum=0.909;DP=61;MQRankSum=0.000;QUALapprox=726;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=1.849;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:32,27,0:59:99:726,0,885,822,966,1788:18,14,15,12 +chrX 3420852 . G . . END=3421029 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 3421030 . C CA, 1206.03 . AS_QUALapprox=|1220|0;AS_VarDP=0|51|0;DP=62;QUALapprox=1220;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1220,152,0,1221,152,1221:0,0,32,19 +chrX 3421031 . A . . END=3421560 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 3421561 . A G, 1005.64 . AS_QUALapprox=|1013|0;AS_VarDP=30|36|0;BaseQRankSum=1.950;DP=66;MQRankSum=0.000;QUALapprox=1013;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=0.477;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:30,36,0:66:99:1013,0,739,1103,848,1951:19,11,16,20 +chrX 3421562 . A . . END=3422231 GT:DP:GQ:MIN_DP:PL 0/0:59:67:59:0,67,1203 +chrX 3422232 . T C, 545.64 . AS_QUALapprox=|553|0;AS_VarDP=23|21|0;BaseQRankSum=0.561;DP=46;MQRankSum=0.000;QUALapprox=553;RAW_GT_COUNT=0,1,0;RAW_MQandDP=163444,46;ReadPosRankSum=-1.845;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:23,21,0:44:99:553,0,617,622,679,1301:11,12,8,13 +chrX 3422233 . T . . END=3422490 GT:DP:GQ:MIN_DP:PL 0/0:45:74:45:0,74,1141 +chrX 3422491 . G C, 530.64 . AS_QUALapprox=|538|0;AS_VarDP=32|22|0;BaseQRankSum=-0.085;DP=55;MQRankSum=0.000;QUALapprox=538;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-1.383;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:32,22,0:54:99:538,0,866,634,931,1565:17,15,15,7 +chrX 3422492 . G . . END=3422692 GT:DP:GQ:MIN_DP:PL 0/0:52:80:52:0,80,1140 +chrX 3422693 . C T, 338.64 . AS_QUALapprox=|346|0;AS_VarDP=23|14|0;BaseQRankSum=0.727;DP=37;MQRankSum=0.836;QUALapprox=346;RAW_GT_COUNT=0,1,0;RAW_MQandDP=132736,37;ReadPosRankSum=-0.893;VarDP=37 GT:AD:DP:GQ:PL:SB 0/1:23,14,0:37:99:346,0,589,414,631,1045:12,11,6,8 +chrX 3422694 . G . . END=3422719 GT:DP:GQ:MIN_DP:PL 0/0:35:77:35:0,77,1072 +chrX 3422720 . CAAAAAA C,CAAAAAAA, 105.60 . AS_QUALapprox=|0|113|0;AS_VarDP=20|0|11|0;BaseQRankSum=-0.416;DP=51;MQRankSum=-0.436;QUALapprox=113;RAW_GT_COUNT=0,1,0;RAW_MQandDP=181136,51;ReadPosRankSum=0.338;VarDP=31 GT:AD:DP:GQ:PL:SB 0/2:20,0,11,0:31:99:113,220,1468,0,634,678,234,1203,700,1186:11,9,4,7 +chrX 3422727 . A . . END=3422733 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,111,1665 +chrX 3422734 . A AG,AAAAAAAG,AAAAAAAAG, 558.60 . AS_QUALapprox=|566|205|216|0;AS_VarDP=14|12|0|0|0;BaseQRankSum=-0.111;DP=47;MQRankSum=0.000;QUALapprox=566;RAW_GT_COUNT=0,1,0;RAW_MQandDP=166736,47;ReadPosRankSum=0.334;VarDP=26 GT:AD:DP:GQ:PL:SB 0/1:14,12,0,0,0:26:99:566,0,460,361,467,1118,350,420,1049,1032,367,474,1092,1043,1091:7,7,7,5 +chrX 3422735 . A . . END=3423786 GT:DP:GQ:MIN_DP:PL 0/0:60:21:47:0,21,1092 +chrX 3423787 . C T, 743.64 . AS_QUALapprox=|751|0;AS_VarDP=34|30|0;BaseQRankSum=-0.242;DP=64;MQRankSum=-0.089;QUALapprox=751;RAW_GT_COUNT=0,1,0;RAW_MQandDP=227401,64;ReadPosRankSum=-1.292;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:34,30,0:64:99:751,0,875,852,965,1817:16,18,20,10 +chrX 3423788 . T . . END=3424178 GT:DP:GQ:MIN_DP:PL 0/0:50:56:50:0,56,1042 +chrX 3424179 . T C, 671.64 . AS_QUALapprox=|679|0;AS_VarDP=21|24|0;BaseQRankSum=1.099;DP=47;MQRankSum=1.114;QUALapprox=679;RAW_GT_COUNT=0,1,0;RAW_MQandDP=167625,47;ReadPosRankSum=-0.785;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:21,24,0:45:99:679,0,540,742,612,1354:12,9,17,7 +chrX 3424180 . A . . END=3424512 GT:DP:GQ:MIN_DP:PL 0/0:75:99:75:0,107,1484 +chrX 3424513 . C T, 1174.64 . AS_QUALapprox=|1182|0;AS_VarDP=30|42|0;BaseQRankSum=2.748;DP=73;MQRankSum=0.000;QUALapprox=1182;RAW_GT_COUNT=0,1,0;RAW_MQandDP=262800,73;ReadPosRankSum=-0.446;VarDP=72 GT:AD:DP:GQ:PL:SB 0/1:30,42,0:72:99:1182,0,687,1271,813,2084:13,17,12,30 +chrX 3424514 . C . . END=3424794 GT:DP:GQ:MIN_DP:PL 0/0:48:93:48:0,93,1157 +chrX 3424795 . T A, 638.64 . AS_QUALapprox=|646|0;AS_VarDP=18|24|0;BaseQRankSum=-0.189;DP=44;MQRankSum=0.000;QUALapprox=646;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=-0.102;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:18,24,0:42:99:646,0,459,700,532,1231:8,10,9,15 +chrX 3424796 . T . . END=3424845 GT:DP:GQ:MIN_DP:PL 0/0:42:82:42:0,82,1206 +chrX 3424846 . AT A, 429.60 . AS_QUALapprox=|437|0;AS_VarDP=19|18|0;BaseQRankSum=1.017;DP=41;MQRankSum=0.000;QUALapprox=437;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147600,41;ReadPosRankSum=0.791;VarDP=37 GT:AD:DP:GQ:PL:SB 0/1:19,18,0:37:99:437,0,456,494,510,1004:9,10,9,9 +chrX 3424848 . T . . END=3426244 GT:DP:GQ:MIN_DP:PL 0/0:57:85:57:0,85,1200 +chrX 3426245 . A G, 633.64 . AS_QUALapprox=|641|0;AS_VarDP=27|25|0;BaseQRankSum=-0.464;DP=53;MQRankSum=0.000;QUALapprox=641;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=1.347;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:27,25,0:52:99:641,0,718,723,793,1516:16,11,11,14 +chrX 3426246 . T . . END=3426602 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,115,1800 +chrX 3426603 . A . . END=3426603 GT:DP:GQ:MIN_DP:PL 0/0:69:0:69:0,0,1436 +chrX 3426604 . A . . END=3426862 GT:DP:GQ:MIN_DP:PL 0/0:46:43:46:0,43,1052 +chrX 3426863 . T C, 630.64 . AS_QUALapprox=|638|0;AS_VarDP=13|24|0;BaseQRankSum=-0.808;DP=40;MQRankSum=0.000;QUALapprox=638;RAW_GT_COUNT=0,1,0;RAW_MQandDP=141921,40;ReadPosRankSum=-1.273;VarDP=37 GT:AD:DP:GQ:PL:SB 0/1:13,24,0:37:99:638,0,306,677,378,1055:6,7,15,9 +chrX 3426864 . G . . END=3426881 GT:DP:GQ:MIN_DP:PL 0/0:40:85:40:0,85,1111 +chrX 3426882 . A . . END=3426882 GT:DP:GQ:MIN_DP:PL 0/0:38:11:38:0,11,903 +chrX 3426883 . G . . END=3427088 GT:DP:GQ:MIN_DP:PL 0/0:39:62:39:0,62,918 +chrX 3427089 . G A, 669.64 . AS_QUALapprox=|677|0;AS_VarDP=11|23|0;BaseQRankSum=0.075;DP=34;MQRankSum=0.000;QUALapprox=677;RAW_GT_COUNT=0,1,0;RAW_MQandDP=122400,34;ReadPosRankSum=-0.976;VarDP=34 GT:AD:DP:GQ:PL:SB 0/1:11,23,0:34:99:677,0,270,710,339,1050:5,6,8,15 +chrX 3427090 . A . . END=3428193 GT:DP:GQ:MIN_DP:PL 0/0:55:56:55:0,56,827 +chrX 3428194 . G A, 425.64 . AS_QUALapprox=|433|0;AS_VarDP=29|17|0;BaseQRankSum=1.478;DP=46;MQRankSum=0.000;QUALapprox=433;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=-0.865;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:29,17,0:46:99:433,0,780,520,831,1351:15,14,12,5 +chrX 3428195 . C . . END=3428469 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 3428470 . G A, 862.64 . AS_QUALapprox=|870|0;AS_VarDP=35|34|0;BaseQRankSum=-1.211;DP=71;MQRankSum=0.000;QUALapprox=870;RAW_GT_COUNT=0,1,0;RAW_MQandDP=255600,71;ReadPosRankSum=0.612;VarDP=69 GT:AD:DP:GQ:PL:SB 0/1:35,34,0:69:99:870,0,945,975,1047,2021:15,20,17,17 +chrX 3428471 . T . . END=3429135 GT:DP:GQ:MIN_DP:PL 0/0:62:98:62:0,98,1290 +chrX 3429136 . T TAA, 940.60 . AS_QUALapprox=|948|0;AS_VarDP=20|24|0;BaseQRankSum=1.075;DP=46;MQRankSum=0.836;QUALapprox=948;RAW_GT_COUNT=0,1,0;RAW_MQandDP=163083,46;ReadPosRankSum=1.156;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:20,24,0:44:99:0|1:3429136_T_TAA:948,0,757,1008,829,1837:3429136:12,8,12,12 +chrX 3429137 . A . . END=3429140 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,114,1710 +chrX 3429141 . C A, 966.64 . AS_QUALapprox=|974|0;AS_VarDP=21|25|0;BaseQRankSum=2.281;DP=47;MQRankSum=0.824;QUALapprox=974;RAW_GT_COUNT=0,1,0;RAW_MQandDP=166683,47;ReadPosRankSum=1.103;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,25,0:46:99:0|1:3429136_T_TAA:974,0,784,1038,859,1897:3429136:13,8,13,12 +chrX 3429142 . A . . END=3430103 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,103,1335 +chrX 3430104 . A G, 971.64 . AS_QUALapprox=|979|0;AS_VarDP=25|37|0;BaseQRankSum=-1.818;DP=62;MQRankSum=0.000;QUALapprox=979;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=1.062;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:25,37,0:62:99:979,0,653,1055,764,1819:16,9,25,12 +chrX 3430105 . A . . END=3430545 GT:DP:GQ:MIN_DP:PL 0/0:59:95:59:0,95,1410 +chrX 3430546 . C T, 537.64 . AS_QUALapprox=|545|0;AS_VarDP=24|21|0;BaseQRankSum=0.867;DP=45;MQRankSum=0.000;QUALapprox=545;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=-0.102;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:24,21,0:45:99:545,0,650,617,712,1329:13,11,14,7 +chrX 3430547 . T . . END=3430616 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,114,1290 +chrX 3430617 . T C, 788.64 . AS_QUALapprox=|796|0;AS_VarDP=21|29|0;BaseQRankSum=0.274;DP=51;MQRankSum=0.000;QUALapprox=796;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=0.275;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:21,29,0:50:99:796,0,527,859,615,1474:11,10,19,10 +chrX 3430618 . C . . END=3430768 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 3430769 . G A, 1045.64 . AS_QUALapprox=|1053|0;AS_VarDP=24|37|0;BaseQRankSum=-1.101;DP=64;MQRankSum=-0.772;QUALapprox=1053;RAW_GT_COUNT=0,1,0;RAW_MQandDP=229009,64;ReadPosRankSum=-1.041;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:24,37,0:61:99:1053,0,626,1125,737,1862:12,12,21,16 +chrX 3430770 . T . . END=3430895 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 3430896 . ACACC A, 881.60 . AS_QUALapprox=|889|0;AS_VarDP=27|26|0;BaseQRankSum=-0.492;DP=57;MQRankSum=0.000;QUALapprox=889;RAW_GT_COUNT=0,1,0;RAW_MQandDP=204736,57;ReadPosRankSum=-0.214;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:27,26,0:53:99:889,0,952,969,1030,1999:17,10,10,16 +chrX 3430901 . C . . END=3431220 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,113,1554 +chrX 3431221 . A G, 722.64 . AS_QUALapprox=|730|0;AS_VarDP=30|28|0;BaseQRankSum=1.026;DP=58;MQRankSum=0.000;QUALapprox=730;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=2.071;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:30,28,0:58:99:730,0,774,820,858,1677:13,17,9,19 +chrX 3431222 . C . . END=3431605 GT:DP:GQ:MIN_DP:PL 0/0:49:77:49:0,77,1187 +chrX 3431606 . C CAAAAA, 775.60 . AS_QUALapprox=|783|0;AS_VarDP=20|21|0;BaseQRankSum=-0.699;DP=52;MQRankSum=-0.927;QUALapprox=783;RAW_GT_COUNT=0,1,0;RAW_MQandDP=186516,52;ReadPosRankSum=-1.475;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:20,21,0:41:99:783,0,716,843,779,1623:15,5,13,8 +chrX 3431607 . A . . END=3431799 GT:DP:GQ:MIN_DP:PL 0/0:51:95:51:0,95,1333 +chrX 3431800 . T A, 309.64 . AS_QUALapprox=|317|0;AS_VarDP=25|13|0;BaseQRankSum=0.632;DP=40;MQRankSum=0.000;QUALapprox=317;RAW_GT_COUNT=0,1,0;RAW_MQandDP=144000,40;ReadPosRankSum=-0.031;VarDP=38 GT:AD:DP:GQ:PL:SB 0/1:25,13,0:38:99:317,0,694,392,733,1125:14,11,7,6 +chrX 3431801 . G . . END=3431901 GT:DP:GQ:MIN_DP:PL 0/0:41:88:41:0,88,1186 +chrX 3431902 . A G, 1209.64 . AS_QUALapprox=|1217|0;AS_VarDP=19|32|0;BaseQRankSum=-0.481;DP=53;MQRankSum=0.000;QUALapprox=1217;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=0.010;VarDP=51 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:19,32,0:51:99:0|1:3431902_A_G:1217,0,669,1275,765,2040:3431902:8,11,20,12 +chrX 3431903 . G . . END=3431909 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 3431910 . A C, 1174.64 . AS_QUALapprox=|1182|0;AS_VarDP=21|31|0;BaseQRankSum=-0.169;DP=53;MQRankSum=0.000;QUALapprox=1182;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=0.804;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,31,0:52:99:0|1:3431902_A_G:1182,0,717,1245,810,2055:3431902:10,11,19,12 +chrX 3431911 . A . . END=3431956 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 3431957 . GCGCACA G, 985.60 . AS_QUALapprox=|993|0;AS_VarDP=26|28|0;BaseQRankSum=0.057;DP=60;MQRankSum=0.000;QUALapprox=993;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=1.114;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:26,28,0:54:99:993,0,947,1071,1032,2103:12,14,17,11 +chrX 3431964 . C . . END=3432712 GT:DP:GQ:MIN_DP:PL 0/0:53:61:53:0,61,1151 +chrX 3432713 . T C, 498.64 . AS_QUALapprox=|506|0;AS_VarDP=24|19|0;BaseQRankSum=0.753;DP=47;MQRankSum=0.000;QUALapprox=506;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=-0.404;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:24,19,0:43:99:506,0,675,578,732,1311:13,11,6,13 +chrX 3432714 . C . . END=3432884 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,101,1489 +chrX 3432885 . CT C, 644.60 . AS_QUALapprox=|652|0;AS_VarDP=22|29|0;BaseQRankSum=-1.130;DP=56;MQRankSum=0.000;QUALapprox=652;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-0.152;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:22,29,0:51:99:652,0,508,718,594,1312:12,10,18,11 +chrX 3432887 . T . . END=3432918 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,103,1628 +chrX 3432919 . T C, 976.64 . AS_QUALapprox=|984|0;AS_VarDP=24|35|0;BaseQRankSum=0.533;DP=63;MQRankSum=0.000;QUALapprox=984;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=0.741;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:24,35,0:59:99:984,0,647,1057,752,1809:15,9,19,16 +chrX 3432920 . T . . END=3433038 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,119,1468 +chrX 3433039 . C A, 757.64 . AS_QUALapprox=|765|0;AS_VarDP=21|27|0;BaseQRankSum=0.399;DP=51;MQRankSum=0.000;QUALapprox=765;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=1.550;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:21,27,0:48:99:765,0,541,827,622,1449:12,9,12,15 +chrX 3433040 . C . . END=3433456 GT:DP:GQ:MIN_DP:PL 0/0:50:86:50:0,86,1390 +chrX 3433457 . T C, 921.64 . AS_QUALapprox=|929|0;AS_VarDP=26|24|0;BaseQRankSum=-0.065;DP=51;MQRankSum=0.000;QUALapprox=929;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=1.379;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,24,0:50:99:0|1:3433457_T_C:929,0,993,1007,1065,2072:3433457:14,12,14,10 +chrX 3433458 . A C, 921.64 . AS_QUALapprox=|929|0;AS_VarDP=26|24|0;BaseQRankSum=0.206;DP=51;MQRankSum=0.000;QUALapprox=929;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=1.408;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,24,0:50:99:0|1:3433457_T_C:929,0,993,1007,1065,2072:3433457:14,12,14,10 +chrX 3433459 . C . . END=3433616 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,110,1434 +chrX 3433617 . G T, 655.64 . AS_QUALapprox=|663|0;AS_VarDP=19|23|0;BaseQRankSum=0.171;DP=46;MQRankSum=0.000;QUALapprox=663;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=0.733;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:19,23,0:42:99:663,0,524,720,593,1314:12,7,11,12 +chrX 3433618 . G . . END=3433937 GT:DP:GQ:MIN_DP:PL 0/0:56:73:56:0,73,1262 +chrX 3433938 . GTCTA G,GTCTATCTA, 1806.02 . AS_QUALapprox=|790|1102|0;AS_VarDP=0|19|25|0;DP=62;QUALapprox=1823;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=44 GT:AD:DP:GQ:PL:SB 1/2:0,19,25,0:44:99:1823,1033,1033,795,0,721,1830,1065,799,1857:0,0,19,25 +chrX 3433943 . T . . END=3434083 GT:DP:GQ:MIN_DP:PL 0/0:59:73:59:0,73,1703 +chrX 3434084 . C T, 752.64 . AS_QUALapprox=|760|0;AS_VarDP=27|29|0;BaseQRankSum=-0.693;DP=61;MQRankSum=0.000;QUALapprox=760;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-1.575;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:27,29,0:56:99:760,0,705,840,793,1633:15,12,13,16 +chrX 3434085 . A . . END=3434330 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,111,1549 +chrX 3434331 . C G, 636.64 . AS_QUALapprox=|644|0;AS_VarDP=26|24|0;BaseQRankSum=-0.107;DP=52;MQRankSum=0.000;QUALapprox=644;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=0.971;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:26,24,0:50:99:644,0,713,722,785,1508:10,16,9,15 +chrX 3434332 . A . . END=3434598 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,107,1568 +chrX 3434599 . C G, 984.64 . AS_QUALapprox=|992|0;AS_VarDP=23|37|0;BaseQRankSum=1.409;DP=62;MQRankSum=0.000;QUALapprox=992;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=-0.456;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:23,37,0:60:99:992,0,486,1060,597,1657:9,14,19,18 +chrX 3434600 . C . . END=3434786 GT:DP:GQ:MIN_DP:PL 0/0:53:43:53:0,43,1047 +chrX 3434787 . A G, 1151.06 . AS_QUALapprox=|1165|0;AS_VarDP=0|38|0;DP=41;QUALapprox=1165;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147600,41;VarDP=38 GT:AD:DP:GQ:PL:SB 1/1:0,38,0:38:99:1165,114,0,1165,114,1165:0,0,20,18 +chrX 3434788 . T . . END=3434948 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,99,1161 +chrX 3434949 . C T, 533.64 . AS_QUALapprox=|541|0;AS_VarDP=32|21|0;BaseQRankSum=0.736;DP=55;MQRankSum=0.000;QUALapprox=541;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=1.146;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:32,21,0:53:99:541,0,868,637,931,1568:19,13,10,11 +chrX 3434950 . G . . END=3435467 GT:DP:GQ:MIN_DP:PL 0/0:56:67:56:0,67,1408 +chrX 3435468 . A T, 954.64 . AS_QUALapprox=|962|0;AS_VarDP=29|26|0;BaseQRankSum=0.460;DP=56;MQRankSum=0.000;QUALapprox=962;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=0.366;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,26,0:55:99:0|1:3435468_A_T:962,0,1117,1050,1195,2245:3435468:6,23,9,17 +chrX 3435469 . C . . END=3435469 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 3435470 . A C, 954.64 . AS_QUALapprox=|962|0;AS_VarDP=29|26|0;BaseQRankSum=-1.432;DP=56;MQRankSum=0.000;QUALapprox=962;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-0.225;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,26,0:55:99:0|1:3435468_A_T:962,0,1117,1050,1195,2245:3435468:6,23,9,17 +chrX 3435471 . G . . END=3435799 GT:DP:GQ:MIN_DP:PL 0/0:49:85:49:0,85,1176 +chrX 3435800 . T C, 686.64 . AS_QUALapprox=|694|0;AS_VarDP=25|26|0;BaseQRankSum=1.397;DP=55;MQRankSum=-3.385;QUALapprox=694;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180332,55;ReadPosRankSum=1.329;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:25,26,0:51:99:694,0,611,769,689,1457:13,12,13,13 +chrX 3435801 . A . . END=3435833 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,120,1800 +chrX 3435834 . C CATAA, 894.60 . AS_QUALapprox=|902|0;AS_VarDP=21|23|0;BaseQRankSum=-1.706;DP=48;MQRankSum=-4.378;QUALapprox=902;RAW_GT_COUNT=0,1,0;RAW_MQandDP=146781,48;ReadPosRankSum=-0.071;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:21,23,0:44:99:902,0,813,966,882,1848:11,10,13,10 +chrX 3435835 . A . . END=3436022 GT:DP:GQ:MIN_DP:PL 0/0:45:72:45:0,72,1075 +chrX 3436023 . T C, 596.64 . AS_QUALapprox=|604|0;AS_VarDP=23|17|0;BaseQRankSum=-0.545;DP=40;MQRankSum=-3.901;QUALapprox=604;RAW_GT_COUNT=0,1,0;RAW_MQandDP=121562,40;ReadPosRankSum=-1.443;VarDP=40 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,17,0:40:99:0|1:3436023_T_C:604,0,903,673,954,1627:3436023:9,14,8,9 +chrX 3436024 . G . . END=3436031 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,108,1620 +chrX 3436032 . C G, 571.64 . AS_QUALapprox=|579|0;AS_VarDP=24|16|0;BaseQRankSum=-0.230;DP=41;MQRankSum=-3.820;QUALapprox=579;RAW_GT_COUNT=0,1,0;RAW_MQandDP=126737,41;ReadPosRankSum=-0.580;VarDP=40 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,16,0:40:99:0|1:3436023_T_C:579,0,938,652,986,1637:3436023:10,14,7,9 +chrX 3436033 . G . . END=3436262 GT:DP:GQ:MIN_DP:PL 0/0:51:89:51:0,89,1212 +chrX 3436263 . T G, 402.64 . AS_QUALapprox=|410|0;AS_VarDP=21|16|0;BaseQRankSum=-1.224;DP=39;MQRankSum=1.436;QUALapprox=410;RAW_GT_COUNT=0,1,0;RAW_MQandDP=80131,39;ReadPosRankSum=-1.304;VarDP=37 GT:AD:DP:GQ:PL:SB 0/1:21,16,0:37:99:410,0,582,473,630,1103:9,12,7,9 +chrX 3436264 . G . . END=3436278 GT:DP:GQ:MIN_DP:PL 0/0:35:93:35:0,93,1395 +chrX 3436279 . C G, 494.64 . AS_QUALapprox=|502|0;AS_VarDP=21|14|0;BaseQRankSum=0.208;DP=35;MQRankSum=2.178;QUALapprox=502;RAW_GT_COUNT=0,1,0;RAW_MQandDP=58344,35;ReadPosRankSum=-1.450;VarDP=35 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,14,0:35:99:0|1:3436279_C_G:502,0,828,565,870,1436:3436279:11,10,6,8 +chrX 3436280 . G . . END=3436281 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +chrX 3436282 . T C, 464.64 . AS_QUALapprox=|472|0;AS_VarDP=21|13|0;BaseQRankSum=0.252;DP=35;MQRankSum=1.906;QUALapprox=472;RAW_GT_COUNT=0,1,0;RAW_MQandDP=56344,35;ReadPosRankSum=-1.313;VarDP=34 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,13,0:34:99:0|1:3436279_C_G:472,0,831,535,870,1405:3436279:11,10,6,7 +chrX 3436283 . C . . END=3436447 GT:DP:GQ:MIN_DP:PL 0/0:34:55:34:0,55,953 +chrX 3436448 . C T, 440.64 . AS_QUALapprox=|448|0;AS_VarDP=24|17|0;BaseQRankSum=0.093;DP=44;MQRankSum=-1.444;QUALapprox=448;RAW_GT_COUNT=0,1,0;RAW_MQandDP=98974,44;ReadPosRankSum=-0.040;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:24,17,0:41:99:448,0,672,520,723,1243:14,10,9,8 +chrX 3436449 . C . . END=3436852 GT:DP:GQ:MIN_DP:PL 0/0:47:42:47:0,42,1046 +chrX 3436853 . GTA G, 588.60 . AS_QUALapprox=|596|0;AS_VarDP=15|19|0;BaseQRankSum=-0.614;DP=41;MQRankSum=0.000;QUALapprox=596;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147600,41;ReadPosRankSum=0.128;VarDP=34 GT:AD:DP:GQ:PL:SB 0/1:15,19,0:34:99:596,0,408,641,466,1107:8,7,11,8 +chrX 3436856 . T . . END=3437396 GT:DP:GQ:MIN_DP:PL 0/0:55:59:55:0,59,1190 +chrX 3437397 . CTG C, 551.60 . AS_QUALapprox=|559|0;AS_VarDP=30|19|0;BaseQRankSum=-0.544;DP=61;MQRankSum=0.000;QUALapprox=559;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-1.573;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:30,19,0:49:99:559,0,948,649,1005,1654:15,15,13,6 +chrX 3437400 . T . . END=3437523 GT:DP:GQ:MIN_DP:PL 0/0:41:34:36:0,34,953 +chrX 3437524 . A . . END=3437524 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,866 +chrX 3437525 . T . . END=3437590 GT:DP:GQ:MIN_DP:PL 0/0:41:40:41:0,40,1002 +chrX 3437591 . T C, 560.64 . AS_QUALapprox=|568|0;AS_VarDP=22|22|0;BaseQRankSum=-1.654;DP=46;MQRankSum=0.000;QUALapprox=568;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=0.916;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:22,22,0:44:99:568,0,628,634,693,1327:11,11,10,12 +chrX 3437592 . C . . END=3437714 GT:DP:GQ:MIN_DP:PL 0/0:57:57:57:0,57,1316 +chrX 3437715 . AGTGT A, 779.60 . AS_QUALapprox=|787|0;AS_VarDP=18|21|0;BaseQRankSum=0.161;DP=49;MQRankSum=0.000;QUALapprox=787;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=0.675;VarDP=39 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:18,21,0:39:99:0|1:3437715_AGTGT_A:787,0,645,841,708,1550:3437715:8,10,11,10 +chrX 3437720 . G . . END=3438606 GT:DP:GQ:MIN_DP:PL 0/0:52:23:41:0,23,1205 +chrX 3438607 . G A, 1005.64 . AS_QUALapprox=|1013|0;AS_VarDP=34|40|0;BaseQRankSum=-1.745;DP=76;MQRankSum=0.000;QUALapprox=1013;RAW_GT_COUNT=0,1,0;RAW_MQandDP=273600,76;ReadPosRankSum=2.089;VarDP=74 GT:AD:DP:GQ:PL:SB 0/1:34,40,0:74:99:1013,0,919,1116,1038,2154:19,15,26,14 +chrX 3438608 . G . . END=3438864 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 3438865 . A AT, 567.60 . AS_QUALapprox=|575|0;AS_VarDP=26|26|0;BaseQRankSum=0.370;DP=56;MQRankSum=0.000;QUALapprox=575;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-0.201;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:26,26,0:52:99:575,0,625,653,702,1355:11,15,14,12 +chrX 3438866 . T . . END=3439502 GT:DP:GQ:MIN_DP:PL 0/0:29:35:28:0,35,829 +chrX 3439503 . T . . END=3439503 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,601 +chrX 3439504 . C CA,CAA, 125.60 . AS_QUALapprox=|92|133|0;AS_VarDP=5|2|3|0;BaseQRankSum=1.085;DP=31;MQRankSum=-0.765;QUALapprox=133;RAW_GT_COUNT=0,1,0;RAW_MQandDP=97941,31;ReadPosRankSum=0.100;VarDP=10 GT:AD:DP:GQ:PL:SB 0/2:5,2,3,0:10:41:133,41,103,0,45,95,116,126,101,202:4,1,4,1 +chrX 3439505 . A . . END=3439562 GT:DP:GQ:MIN_DP:PL 0/0:37:48:32:0,48,720 +chrX 3439563 . C T, 732.64 . AS_QUALapprox=|740|0;AS_VarDP=15|26|0;BaseQRankSum=-0.457;DP=41;MQRankSum=0.000;QUALapprox=740;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147600,41;ReadPosRankSum=-2.099;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:15,26,0:41:99:740,0,378,785,456,1241:12,3,14,12 +chrX 3439564 . G . . END=3441676 GT:DP:GQ:MIN_DP:PL 0/0:56:79:56:0,79,1066 +chrX 3441677 . G A, 862.64 . AS_QUALapprox=|870|0;AS_VarDP=27|32|0;BaseQRankSum=1.770;DP=63;MQRankSum=0.000;QUALapprox=870;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=0.776;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:27,32,0:59:99:870,0,661,951,757,1709:14,13,20,12 +chrX 3441678 . T . . END=3441812 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 3441813 . G A, 1148.64 . AS_QUALapprox=|1156|0;AS_VarDP=25|41|0;BaseQRankSum=-1.472;DP=66;MQRankSum=0.000;QUALapprox=1156;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=1.177;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:25,41,0:66:99:1156,0,644,1231,767,1998:7,18,19,22 +chrX 3441814 . G . . END=3442363 GT:DP:GQ:MIN_DP:PL 0/0:54:85:54:0,85,1231 +chrX 3442364 . A G, 571.64 . AS_QUALapprox=|579|0;AS_VarDP=20|22|0;BaseQRankSum=-1.771;DP=42;MQRankSum=0.000;QUALapprox=579;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151200,42;ReadPosRankSum=0.378;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:20,22,0:42:99:579,0,544,639,610,1249:5,15,9,13 +chrX 3442365 . T . . END=3442582 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,101,1435 +chrX 3442583 . GT G, 298.60 . AS_QUALapprox=|306|0;AS_VarDP=28|18|0;BaseQRankSum=-0.271;DP=52;MQRankSum=0.000;QUALapprox=306;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=-0.146;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:28,18,0:46:99:306,0,549,387,601,989:18,10,12,6 +chrX 3442585 . T . . END=3443170 GT:DP:GQ:MIN_DP:PL 0/0:58:35:46:0,35,1102 +chrX 3443171 . C CT, 606.60 . AS_QUALapprox=|614|0;AS_VarDP=31|28|0;BaseQRankSum=0.658;DP=64;MQRankSum=0.000;QUALapprox=614;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=-1.078;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:31,28,0:59:99:614,0,707,707,791,1498:19,12,13,15 +chrX 3443172 . T . . END=3445592 GT:DP:GQ:MIN_DP:PL 0/0:54:75:54:0,75,938 +chrX 3445593 . C T, 1266.06 . AS_QUALapprox=|1280|0;AS_VarDP=0|39|0;DP=41;QUALapprox=1280;RAW_GT_COUNT=0,0,1;RAW_MQandDP=146500,41;VarDP=39 GT:AD:DP:GQ:PL:SB 1/1:0,39,0:39:99:1280,117,0,1280,117,1280:0,0,24,15 +chrX 3445594 . A . . END=3446098 GT:DP:GQ:MIN_DP:PL 0/0:41:32:39:0,32,1087 +chrX 3446099 . CA C, 146.60 . AS_QUALapprox=|154|0;AS_VarDP=14|13|0;BaseQRankSum=-1.063;DP=46;MQRankSum=1.038;QUALapprox=154;RAW_GT_COUNT=0,1,0;RAW_MQandDP=155849,46;ReadPosRankSum=-1.727;VarDP=27 GT:AD:DP:GQ:PL:SB 0/1:14,13,0:27:99:154,0,165,195,203,397:4,10,11,2 +chrX 3446101 . A . . END=3446124 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,102,1530 +chrX 3446125 . C . . END=3446125 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,1092 +chrX 3446126 . T . . END=3446148 GT:DP:GQ:MIN_DP:PL 0/0:40:75:40:0,75,1087 +chrX 3446149 . A G, 582.64 . AS_QUALapprox=|590|0;AS_VarDP=18|22|0;BaseQRankSum=0.351;DP=40;MQRankSum=0.000;QUALapprox=590;RAW_GT_COUNT=0,1,0;RAW_MQandDP=144000,40;ReadPosRankSum=-2.040;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:18,22,0:40:99:590,0,451,644,517,1161:7,11,11,11 +chrX 3446150 . C . . END=3447666 GT:DP:GQ:MIN_DP:PL 0/0:61:48:61:0,48,1221 +chrX 3447667 . A C, 2353.06 . AS_QUALapprox=|2367|0;AS_VarDP=0|73|0;DP=74;QUALapprox=2367;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;VarDP=73 GT:AD:DP:GQ:PL:SB 1/1:0,73,0:73:99:2367,218,0,2367,218,2367:0,0,36,37 +chrX 3447668 . C . . END=3448057 GT:DP:GQ:MIN_DP:PL 0/0:65:93:65:0,93,1395 +chrX 3448058 . T . . END=3448061 GT:DP:GQ:MIN_DP:PL 0/0:54:0:54:0,0,510 +chrX 3448062 . T . . END=3448082 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,99,1485 +chrX 3448083 . ATC A, 959.60 . AS_QUALapprox=|967|0;AS_VarDP=21|26|0;BaseQRankSum=-0.640;DP=48;MQRankSum=0.000;QUALapprox=967;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=0.310;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,26,0:47:99:0|1:3448083_ATC_A:967,0,741,1030,820,1850:3448083:14,7,9,17 +chrX 3448086 . T . . END=3448086 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,120,1800 +chrX 3448087 . ATC A, 953.60 . AS_QUALapprox=|961|0;AS_VarDP=23|26|0;BaseQRankSum=-1.367;DP=50;MQRankSum=0.000;QUALapprox=961;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=0.514;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,26,0:49:99:0|1:3448083_ATC_A:961,0,805,1030,883,1913:3448083:15,8,9,17 +chrX 3448090 . T . . END=3448154 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,100,1346 +chrX 3448155 . A G, 296.64 . AS_QUALapprox=|304|0;AS_VarDP=26|15|0;BaseQRankSum=-1.171;DP=44;MQRankSum=0.000;QUALapprox=304;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=1.002;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:26,15,0:41:99:304,0,717,382,761,1143:13,13,9,6 +chrX 3448156 . T . . END=3448219 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,108,1265 +chrX 3448220 . C T, 1644.06 . AS_QUALapprox=|1658|0;AS_VarDP=0|50|0;DP=51;QUALapprox=1658;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1658,150,0,1658,150,1658:0,0,33,17 +chrX 3448221 . G . . END=3448638 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,101,1315 +chrX 3448639 . G A, 516.64 . AS_QUALapprox=|524|0;AS_VarDP=26|21|0;BaseQRankSum=-0.436;DP=49;MQRankSum=0.000;QUALapprox=524;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=0.000;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:26,21,0:47:99:524,0,713,602,776,1378:9,17,13,8 +chrX 3448640 . C . . END=3449298 GT:DP:GQ:MIN_DP:PL 0/0:52:63:52:0,63,1255 +chrX 3449299 . C T, 557.64 . AS_QUALapprox=|565|0;AS_VarDP=24|21|0;BaseQRankSum=-1.154;DP=46;MQRankSum=0.000;QUALapprox=565;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=-0.353;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:24,21,0:45:99:565,0,689,637,752,1389:13,11,10,11 +chrX 3449300 . T . . END=3449401 GT:DP:GQ:MIN_DP:PL 0/0:40:67:40:0,67,1092 +chrX 3449402 . C T, 522.64 . AS_QUALapprox=|530|0;AS_VarDP=16|20|0;BaseQRankSum=-1.454;DP=38;MQRankSum=0.000;QUALapprox=530;RAW_GT_COUNT=0,1,0;RAW_MQandDP=136800,38;ReadPosRankSum=-0.765;VarDP=36 GT:AD:DP:GQ:PL:SB 0/1:16,20,0:36:99:530,0,438,578,498,1076:8,8,10,10 +chrX 3449403 . T . . END=3450469 GT:DP:GQ:MIN_DP:PL 0/0:50:76:50:0,76,1055 +chrX 3450470 . T . . END=3450470 GT:DP:GQ:MIN_DP:PL 0/0:38:15:38:0,15,973 +chrX 3450471 . C . . END=3450647 GT:DP:GQ:MIN_DP:PL 0/0:43:79:43:0,79,1052 +chrX 3450648 . C CT, 296.60 . AS_QUALapprox=|304|0;AS_VarDP=21|15|0;BaseQRankSum=1.141;DP=39;MQRankSum=0.000;QUALapprox=304;RAW_GT_COUNT=0,1,0;RAW_MQandDP=140400,39;ReadPosRankSum=-0.466;VarDP=36 GT:AD:DP:GQ:PL:SB 0/1:21,15,0:36:99:304,0,483,367,528,895:11,10,7,8 +chrX 3450649 . T . . END=3451313 GT:DP:GQ:MIN_DP:PL 0/0:47:24:45:0,24,1105 +chrX 3451314 . C T, 613.64 . AS_QUALapprox=|621|0;AS_VarDP=29|23|0;BaseQRankSum=1.194;DP=56;MQRankSum=0.000;QUALapprox=621;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-1.078;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:29,23,0:52:99:621,0,792,708,861,1569:10,19,15,8 +chrX 3451315 . T . . END=3451838 GT:DP:GQ:MIN_DP:PL 0/0:49:72:49:0,72,1230 +chrX 3451839 . A G, 499.64 . AS_QUALapprox=|507|0;AS_VarDP=18|18|0;BaseQRankSum=1.831;DP=37;MQRankSum=0.000;QUALapprox=507;RAW_GT_COUNT=0,1,0;RAW_MQandDP=133200,37;ReadPosRankSum=0.538;VarDP=36 GT:AD:DP:GQ:PL:SB 0/1:18,18,0:36:99:507,0,438,560,492,1052:10,8,13,5 +chrX 3451840 . T . . END=3451892 GT:DP:GQ:MIN_DP:PL 0/0:34:57:34:0,57,855 +chrX 3451893 . G GAA,GAAA, 1183.02 . AS_QUALapprox=|923|1107|0;AS_VarDP=0|8|19|0;DP=54;QUALapprox=1200;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190400,54;VarDP=27 GT:AD:DP:GQ:PL:SB 1/2:0,8,19,0:27:93:1200,389,277,206,0,93,919,380,198,825:0,0,12,15 +chrX 3451894 . A . . END=3451910 GT:DP:GQ:MIN_DP:PL 0/0:57:51:57:0,51,1326 +chrX 3451911 . T . . END=3451911 GT:DP:GQ:MIN_DP:PL 0/0:49:3:49:0,3,1244 +chrX 3451912 . A . . END=3452465 GT:DP:GQ:MIN_DP:PL 0/0:53:61:53:0,61,1334 +chrX 3452466 . CATCTATCTATCTATCT C,CATCTATCTATCT, 1279.02 . AS_QUALapprox=|809|541|0;AS_VarDP=0|19|12|0;DP=44;QUALapprox=1296;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158400,44;VarDP=31 GT:AD:DP:GQ:PL:SB 1/2:0,19,12,0:31:99:1296,504,487,792,0,755,1299,527,794,1318:0,0,16,15 +chrX 3452483 . A . . END=3453783 GT:DP:GQ:MIN_DP:PL 0/0:55:83:55:0,83,1251 +chrX 3453784 . C T, 950.64 . AS_QUALapprox=|958|0;AS_VarDP=27|35|0;BaseQRankSum=0.291;DP=65;MQRankSum=0.000;QUALapprox=958;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=-0.270;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:27,35,0:62:99:958,0,675,1039,780,1819:12,15,12,23 +chrX 3453785 . C . . END=3454226 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,101,1549 +chrX 3454227 . G A, 614.64 . AS_QUALapprox=|622|0;AS_VarDP=25|22|0;BaseQRankSum=0.000;DP=48;MQRankSum=0.000;QUALapprox=622;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=-2.357;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:25,22,0:47:99:622,0,728,697,794,1491:12,13,9,13 +chrX 3454228 . T . . END=3454739 GT:DP:GQ:MIN_DP:PL 0/0:56:90:56:0,90,1265 +chrX 3454740 . A T, 677.64 . AS_QUALapprox=|685|0;AS_VarDP=30|26|0;BaseQRankSum=-1.391;DP=57;MQRankSum=0.000;QUALapprox=685;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=0.937;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:30,26,0:56:99:685,0,855,776,933,1708:18,12,15,11 +chrX 3454741 . T . . END=3454932 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,117,1755 +chrX 3454933 . T G, 781.64 . AS_QUALapprox=|789|0;AS_VarDP=24|29|0;BaseQRankSum=-1.225;DP=55;MQRankSum=0.000;QUALapprox=789;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=0.599;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:24,29,0:53:99:789,0,655,861,742,1603:10,14,14,15 +chrX 3454934 . A . . END=3455087 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,100,1296 +chrX 3455088 . T G, 811.64 . AS_QUALapprox=|819|0;AS_VarDP=19|32|0;BaseQRankSum=-0.468;DP=53;MQRankSum=0.000;QUALapprox=819;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=0.400;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:19,32,0:51:99:819,0,437,876,533,1409:7,12,18,14 +chrX 3455089 . C . . END=3455172 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,106,1420 +chrX 3455173 . T G, 1584.06 . AS_QUALapprox=|1598|0;AS_VarDP=0|46|0;DP=48;QUALapprox=1598;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1598,138,0,1598,138,1598:0,0,23,23 +chrX 3455174 . T . . END=3455500 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,103,1380 +chrX 3455501 . G A, 1603.06 . AS_QUALapprox=|1617|0;AS_VarDP=0|49|0;DP=51;QUALapprox=1617;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1617,147,0,1617,147,1617:0,0,23,26 +chrX 3455502 . T . . END=3455707 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,113,1629 +chrX 3455708 . A G, 1441.06 . AS_QUALapprox=|1455|0;AS_VarDP=0|47|0;DP=47;QUALapprox=1455;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1455,140,0,1455,140,1455:0,0,23,24 +chrX 3455709 . G . . END=3456598 GT:DP:GQ:MIN_DP:PL 0/0:64:68:64:0,68,1607 +chrX 3456599 . G A, 526.64 . AS_QUALapprox=|534|0;AS_VarDP=24|20|0;BaseQRankSum=0.615;DP=49;MQRankSum=0.000;QUALapprox=534;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=-0.366;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:24,20,0:44:99:534,0,622,605,682,1287:10,14,8,12 +chrX 3456600 . G . . END=3456604 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,108,1620 +chrX 3456605 . T TTCTCTCTCTCTCTCTCTCTC, 462.60 . AS_QUALapprox=|470|0;AS_VarDP=13|13|0;BaseQRankSum=-0.420;DP=50;MQRankSum=0.056;QUALapprox=470;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176000,50;ReadPosRankSum=1.308;VarDP=26 GT:AD:DP:GQ:PL:SB 0/1:13,13,0:26:99:470,0,445,512,484,997:7,6,6,7 +chrX 3456606 . T . . END=3456645 GT:DP:GQ:MIN_DP:PL 0/0:27:22:22:0,22,486 +chrX 3456646 . A . . END=3456646 GT:DP:GQ:MIN_DP:PL 0/0:23:0:23:0,0,461 +chrX 3456647 . C . . END=3456648 GT:DP:GQ:MIN_DP:PL 0/0:25:63:25:0,63,945 +chrX 3456649 . G . . END=3456649 GT:DP:GQ:MIN_DP:PL 0/0:16:19:16:0,19,428 +chrX 3456650 . T . . END=3456669 GT:DP:GQ:MIN_DP:PL 0/0:22:45:22:0,45,675 +chrX 3456670 . TCCC T, 574.93 . AS_QUALapprox=|582|0;AS_VarDP=2|14|0;BaseQRankSum=0.787;DP=23;MQRankSum=-0.189;QUALapprox=582;RAW_GT_COUNT=0,1,0;RAW_MQandDP=78800,23;ReadPosRankSum=-1.193;VarDP=16 GT:AD:DP:GQ:PL:SB 0/1:2,14,0:16:1:582,0,1,588,43,631:2,0,2,12 +chrX 3456674 . C . . END=3456675 GT:DP:GQ:MIN_DP:PL 0/0:28:46:28:0,46,809 +chrX 3456676 . C . . END=3456676 GT:DP:GQ:MIN_DP:PL 0/0:26:9:26:0,9,705 +chrX 3456677 . C . . END=3456679 GT:DP:GQ:MIN_DP:PL 0/0:28:25:25:0,25,739 +chrX 3456680 . C . . END=3456680 GT:DP:GQ:MIN_DP:PL 0/0:24:3:24:0,3,645 +chrX 3456681 . C . . END=3456681 GT:DP:GQ:MIN_DP:PL 0/0:27:46:27:0,46,819 +chrX 3456682 . A . . END=3456683 GT:DP:GQ:MIN_DP:PL 0/0:24:0:24:0,0,457 +chrX 3456684 . C . . END=3456686 GT:DP:GQ:MIN_DP:PL 0/0:24:72:24:0,72,753 +chrX 3456687 . G . . END=3456687 GT:DP:GQ:MIN_DP:PL 0/0:26:19:26:0,19,775 +chrX 3456688 . T . . END=3457399 GT:DP:GQ:MIN_DP:PL 0/0:24:20:23:0,20,681 +chrX 3457400 . G T, 806.64 . AS_QUALapprox=|814|0;AS_VarDP=22|29|0;BaseQRankSum=1.598;DP=54;MQRankSum=0.000;QUALapprox=814;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=0.257;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:22,29,0:51:99:814,0,527,880,614,1493:14,8,16,13 +chrX 3457401 . A . . END=3457837 GT:DP:GQ:MIN_DP:PL 0/0:51:93:51:0,93,1266 +chrX 3457838 . T C, 706.64 . AS_QUALapprox=|714|0;AS_VarDP=13|26|0;BaseQRankSum=-1.363;DP=40;MQRankSum=0.000;QUALapprox=714;RAW_GT_COUNT=0,1,0;RAW_MQandDP=141625,40;ReadPosRankSum=1.282;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:13,26,0:39:99:714,0,325,753,403,1156:5,8,12,14 +chrX 3457839 . T . . END=3458262 GT:DP:GQ:MIN_DP:PL 0/0:44:65:44:0,65,1086 +chrX 3458263 . A G, 2050.06 . AS_QUALapprox=|2064|0;AS_VarDP=0|64|0;DP=67;QUALapprox=2064;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=64 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:2064,192,0,2064,192,2064:0,0,36,28 +chrX 3458264 . T . . END=3459473 GT:DP:GQ:MIN_DP:PL 0/0:57:74:57:0,74,1181 +chrX 3459474 . G A, 707.64 . AS_QUALapprox=|715|0;AS_VarDP=26|25|0;BaseQRankSum=2.781;DP=54;MQRankSum=0.000;QUALapprox=715;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=0.386;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:26,25,0:51:99:715,0,680,793,755,1548:13,13,12,13 +chrX 3459475 . C . . END=3460017 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,104,1584 +chrX 3460018 . C A, 802.64 . AS_QUALapprox=|810|0;AS_VarDP=22|29|0;BaseQRankSum=0.357;DP=52;MQRankSum=0.000;QUALapprox=810;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=0.961;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:22,29,0:51:99:810,0,567,876,654,1530:9,13,16,13 +chrX 3460019 . T . . END=3461117 GT:DP:GQ:MIN_DP:PL 0/0:55:88:55:0,88,1300 +chrX 3461118 . T C, 609.64 . AS_QUALapprox=|617|0;AS_VarDP=34|26|0;BaseQRankSum=-0.975;DP=61;MQRankSum=0.000;QUALapprox=617;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-0.343;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:34,26,0:60:99:617,0,953,719,1030,1749:19,15,14,12 +chrX 3461119 . C . . END=3462636 GT:DP:GQ:MIN_DP:PL 0/0:57:94:57:0,94,1230 +chrX 3462637 . CCACA C, 1557.03 . AS_QUALapprox=|1571|0;AS_VarDP=0|37|0;DP=46;QUALapprox=1571;RAW_GT_COUNT=0,0,1;RAW_MQandDP=159028,46;VarDP=37 GT:AD:DP:GQ:PL:SB 1/1:0,37,0:37:99:1571,111,0,1571,111,1571:0,0,20,17 +chrX 3462642 . C . . END=3463003 GT:DP:GQ:MIN_DP:PL 0/0:62:84:62:0,84,1459 +chrX 3463004 . T C, 706.64 . AS_QUALapprox=|714|0;AS_VarDP=20|25|0;BaseQRankSum=1.183;DP=46;MQRankSum=0.000;QUALapprox=714;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=-0.617;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:20,25,0:45:99:714,0,518,774,593,1367:8,12,12,13 +chrX 3463005 . A . . END=3463301 GT:DP:GQ:MIN_DP:PL 0/0:44:85:44:0,85,1195 +chrX 3463302 . C G, 430.64 . AS_QUALapprox=|438|0;AS_VarDP=24|17|0;BaseQRankSum=1.376;DP=43;MQRankSum=0.000;QUALapprox=438;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154800,43;ReadPosRankSum=-0.980;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:24,17,0:41:99:438,0,621,510,672,1182:11,13,11,6 +chrX 3463303 . C . . END=3463470 GT:DP:GQ:MIN_DP:PL 0/0:47:75:47:0,75,1072 +chrX 3463471 . T C, 493.64 . AS_QUALapprox=|501|0;AS_VarDP=26|22|0;BaseQRankSum=-1.063;DP=51;MQRankSum=0.000;QUALapprox=501;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=0.104;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:26,22,0:48:99:501,0,676,579,741,1320:12,14,14,8 +chrX 3463472 . A . . END=3463843 GT:DP:GQ:MIN_DP:PL 0/0:53:84:53:0,84,1389 +chrX 3463844 . G A, 572.64 . AS_QUALapprox=|580|0;AS_VarDP=19|21|0;BaseQRankSum=1.362;DP=44;MQRankSum=0.000;QUALapprox=580;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=0.799;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:19,21,0:40:99:580,0,465,637,528,1165:10,9,10,11 +chrX 3463845 . G . . END=3464527 GT:DP:GQ:MIN_DP:PL 0/0:44:58:44:0,58,1018 +chrX 3464528 . C CT, 725.03 . AS_QUALapprox=|739|0;AS_VarDP=0|28|0;DP=35;QUALapprox=739;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=28 GT:AD:DP:GQ:PL:SB 1/1:0,28,0:28:84:739,84,0,739,84,739:0,0,18,10 +chrX 3464529 . T . . END=3464611 GT:DP:GQ:MIN_DP:PL 0/0:36:62:36:0,62,918 +chrX 3464612 . T C, 1306.06 . AS_QUALapprox=|1320|0;AS_VarDP=0|41|0;DP=42;QUALapprox=1320;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151200,42;VarDP=41 GT:AD:DP:GQ:PL:SB 1/1:0,41,0:41:99:1320,123,0,1320,123,1320:0,0,25,16 +chrX 3464613 . T . . END=3465161 GT:DP:GQ:MIN_DP:PL 0/0:52:82:52:0,82,1349 +chrX 3465162 . C . . END=3465166 GT:DP:GQ:MIN_DP:PL 0/0:63:0:63:0,0,1558 +chrX 3465167 . T TCCGGAAGAG, 2640.03 . AS_QUALapprox=|2654|0;AS_VarDP=0|60|0;DP=63;QUALapprox=2654;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:2654,180,0,2654,181,2654:0,0,37,23 +chrX 3465168 . C . . END=3465179 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 3465180 . A . . END=3465187 GT:DP:GQ:MIN_DP:PL 0/0:66:0:66:0,0,1544 +chrX 3465188 . G . . END=3465272 GT:DP:GQ:MIN_DP:PL 0/0:68:38:65:0,38,1800 +chrX 3465273 . G A, 660.64 . AS_QUALapprox=|668|0;AS_VarDP=36|26|0;BaseQRankSum=0.543;DP=65;MQRankSum=0.000;QUALapprox=668;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=1.691;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:36,26,0:62:99:668,0,909,774,987,1762:23,13,8,18 +chrX 3465274 . G . . END=3465492 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 3465493 . C T, 2342.06 . AS_QUALapprox=|2356|0;AS_VarDP=0|74|0;DP=79;QUALapprox=2356;RAW_GT_COUNT=0,0,1;RAW_MQandDP=282916,79;VarDP=74 GT:AD:DP:GQ:PL:SB 1/1:0,74,0:74:99:2356,222,0,2356,222,2356:0,0,36,38 +chrX 3465494 . T . . END=3465760 GT:DP:GQ:MIN_DP:PL 0/0:68:92:68:0,92,1455 +chrX 3465761 . A T, 678.64 . AS_QUALapprox=|686|0;AS_VarDP=35|25|0;BaseQRankSum=1.973;DP=62;MQRankSum=0.000;QUALapprox=686;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=-0.442;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:35,25,0:60:99:686,0,1026,791,1102,1893:20,15,14,11 +chrX 3465762 . T . . END=3466181 GT:DP:GQ:MIN_DP:PL 0/0:72:91:72:0,91,1800 +chrX 3466182 . A ATATATT, 2865.03 . AS_QUALapprox=|2879|0;AS_VarDP=0|64|0;DP=69;QUALapprox=2879;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=64 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:2879,192,0,2880,193,2880:0,0,32,32 +chrX 3466183 . T . . END=3466361 GT:DP:GQ:MIN_DP:PL 0/0:68:20:64:0,20,1746 +chrX 3466362 . T C, 1966.06 . AS_QUALapprox=|1980|0;AS_VarDP=0|60|0;DP=63;QUALapprox=1980;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:1980,180,0,1980,180,1980:0,0,34,26 +chrX 3466363 . A . . END=3466883 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,116,1623 +chrX 3466884 . A T, 1590.06 . AS_QUALapprox=|1604|0;AS_VarDP=0|47|0;DP=51;QUALapprox=1604;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1604,141,0,1604,141,1604:0,0,19,28 +chrX 3466885 . T . . END=3466944 GT:DP:GQ:MIN_DP:PL 0/0:43:85:43:0,85,1250 +chrX 3466945 . A . . END=3466945 GT:DP:GQ:MIN_DP:PL 0/0:54:10:54:0,10,1209 +chrX 3466946 . T . . END=3466948 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 3466949 . C CTTTT,CTTTTTT, 1519.02 . AS_QUALapprox=|1406|1203|0;AS_VarDP=1|16|9|0;BaseQRankSum=1.651;DP=52;MQRankSum=-0.456;QUALapprox=1536;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165800,52;ReadPosRankSum=-0.935;VarDP=26 GT:AD:DP:GQ:PL:SB 1/2:1,16,9,0:26:99:1536,215,130,413,0,333,1123,242,437,1054:0,1,14,11 +chrX 3466950 . T . . END=3466995 GT:DP:GQ:MIN_DP:PL 0/0:32:49:32:0,49,729 +chrX 3466996 . A C, 1023.06 . AS_QUALapprox=|1037|0;AS_VarDP=0|31|0;DP=35;QUALapprox=1037;RAW_GT_COUNT=0,0,1;RAW_MQandDP=124000,35;VarDP=31 GT:AD:DP:GQ:PL:SB 1/1:0,31,0:31:93:1037,93,0,1037,93,1037:0,0,11,20 +chrX 3466997 . C . . END=3466998 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,977 +chrX 3466999 . A . . END=3466999 GT:DP:GQ:MIN_DP:PL 0/0:39:33:39:0,33,1108 +chrX 3467000 . G . . END=3467000 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,972 +chrX 3467001 . C . . END=3467496 GT:DP:GQ:MIN_DP:PL 0/0:29:38:28:0,38,859 +chrX 3467497 . T . . END=3467498 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,759 +chrX 3467499 . A . . END=3467524 GT:DP:GQ:MIN_DP:PL 0/0:50:58:50:0,58,1215 +chrX 3467525 . T . . END=3467525 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,1207 +chrX 3467526 . G . . END=3469457 GT:DP:GQ:MIN_DP:PL 0/0:59:59:59:0,59,1207 +chrX 3469458 . G A, 743.64 . AS_QUALapprox=|751|0;AS_VarDP=32|27|0;BaseQRankSum=2.048;DP=61;MQRankSum=0.000;QUALapprox=751;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=0.502;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:32,27,0:59:99:751,0,889,847,970,1817:17,15,15,12 +chrX 3469459 . C . . END=3470464 GT:DP:GQ:MIN_DP:PL 0/0:56:74:56:0,74,1111 +chrX 3470465 . C T, 323.64 . AS_QUALapprox=|331|0;AS_VarDP=28|14|0;BaseQRankSum=0.324;DP=44;MQRankSum=0.000;QUALapprox=331;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=1.321;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:28,14,0:42:99:331,0,762,415,804,1219:10,18,8,6 +chrX 3470466 . C . . END=3470872 GT:DP:GQ:MIN_DP:PL 0/0:52:65:52:0,65,1142 +chrX 3470873 . C CT, 484.60 . AS_QUALapprox=|492|0;AS_VarDP=26|22|0;BaseQRankSum=0.460;DP=62;MQRankSum=0.000;QUALapprox=492;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=-2.112;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:26,22,0:48:99:492,0,634,571,700,1271:14,12,14,8 +chrX 3470874 . T . . END=3471377 GT:DP:GQ:MIN_DP:PL 0/0:57:49:57:0,49,1166 +chrX 3471378 . A G, 708.64 . AS_QUALapprox=|716|0;AS_VarDP=27|26|0;BaseQRankSum=1.158;DP=54;MQRankSum=0.000;QUALapprox=716;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=0.730;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:27,26,0:53:99:716,0,675,795,753,1548:14,13,12,14 +chrX 3471379 . T . . END=3471470 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 3471471 . T C, 766.64 . AS_QUALapprox=|774|0;AS_VarDP=17|26|0;BaseQRankSum=0.000;DP=44;MQRankSum=0.000;QUALapprox=774;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=-0.982;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:17,26,0:43:99:774,0,462,825,540,1365:6,11,7,19 +chrX 3471472 . A . . END=3474696 GT:DP:GQ:MIN_DP:PL 0/0:59:64:59:0,64,1304 +chrX 3474697 . T A, 525.64 . AS_QUALapprox=|533|0;AS_VarDP=23|21|0;BaseQRankSum=-1.429;DP=46;MQRankSum=0.000;QUALapprox=533;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=0.223;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:23,21,0:44:99:533,0,650,602,713,1315:14,9,17,4 +chrX 3474698 . A . . END=3474866 GT:DP:GQ:MIN_DP:PL 0/0:51:53:51:0,53,1388 +chrX 3474867 . G . . END=3474868 GT:DP:GQ:MIN_DP:PL 0/0:61:9:61:0,9,1491 +chrX 3474869 . A . . END=3474869 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 3474870 . A . . END=3474870 GT:DP:GQ:MIN_DP:PL 0/0:63:0:63:0,0,1563 +chrX 3474871 . A . . END=3474874 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 3474875 . A . . END=3474875 GT:DP:GQ:MIN_DP:PL 0/0:64:0:64:0,0,1448 +chrX 3474876 . A . . END=3474877 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 3474878 . G GAAAGAAAAGAAA, 1119.60 . AS_QUALapprox=|1127|0;AS_VarDP=25|29|0;BaseQRankSum=-0.795;DP=60;MQRankSum=0.000;QUALapprox=1127;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=-0.373;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:25,29,0:54:99:1127,0,941,1203,1028,2231:12,13,12,17 +chrX 3474879 . A . . END=3475859 GT:DP:GQ:MIN_DP:PL 0/0:56:78:56:0,78,1304 +chrX 3475860 . C A, 769.64 . AS_QUALapprox=|777|0;AS_VarDP=24|28|0;BaseQRankSum=-1.204;DP=52;MQRankSum=0.000;QUALapprox=777;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=-0.496;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:24,28,0:52:99:777,0,668,849,752,1601:14,10,13,15 +chrX 3475861 . A . . END=3476341 GT:DP:GQ:MIN_DP:PL 0/0:53:55:53:0,55,1009 +chrX 3476342 . A AAAG, 840.60 . AS_QUALapprox=|848|0;AS_VarDP=20|23|0;BaseQRankSum=0.265;DP=47;MQRankSum=0.000;QUALapprox=848;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=0.512;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:20,23,0:43:99:848,0,711,909,779,1688:9,11,14,9 +chrX 3476343 . A . . END=3477089 GT:DP:GQ:MIN_DP:PL 0/0:53:83:53:0,83,1241 +chrX 3477090 . A T, 709.64 . AS_QUALapprox=|717|0;AS_VarDP=26|27|0;BaseQRankSum=-1.012;DP=56;MQRankSum=0.000;QUALapprox=717;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=1.166;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:26,27,0:53:99:717,0,713,795,794,1589:14,12,10,17 +chrX 3477091 . G . . END=3478215 GT:DP:GQ:MIN_DP:PL 0/0:51:63:51:0,63,1052 +chrX 3478216 . G C, 392.64 . AS_QUALapprox=|400|0;AS_VarDP=21|16|0;BaseQRankSum=-0.827;DP=37;MQRankSum=0.000;QUALapprox=400;RAW_GT_COUNT=0,1,0;RAW_MQandDP=133200,37;ReadPosRankSum=0.859;VarDP=37 GT:AD:DP:GQ:PL:SB 0/1:21,16,0:37:99:400,0,599,463,647,1110:14,7,10,6 +chrX 3478217 . A . . END=3479082 GT:DP:GQ:MIN_DP:PL 0/0:52:71:52:0,71,1221 +chrX 3479083 . A T, 619.64 . AS_QUALapprox=|627|0;AS_VarDP=24|22|0;BaseQRankSum=2.003;DP=49;MQRankSum=0.000;QUALapprox=627;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=-0.770;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:24,22,0:46:99:627,0,641,698,707,1405:8,16,12,10 +chrX 3479084 . C . . END=3479161 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,102,1191 +chrX 3479162 . A ACAG, 1024.60 . AS_QUALapprox=|1032|0;AS_VarDP=14|26|0;BaseQRankSum=-0.366;DP=40;MQRankSum=0.000;QUALapprox=1032;RAW_GT_COUNT=0,1,0;RAW_MQandDP=144000,40;ReadPosRankSum=0.397;VarDP=40 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:14,26,0:40:99:0|1:3479162_A_ACAG:1032,0,473,1074,552,1626:3479162:6,8,14,12 +chrX 3479163 . A . . END=3479163 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,105,1575 +chrX 3479164 . C G, 1024.64 . AS_QUALapprox=|1032|0;AS_VarDP=14|26|0;BaseQRankSum=-0.069;DP=41;MQRankSum=0.000;QUALapprox=1032;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147600,41;ReadPosRankSum=0.284;VarDP=40 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:14,26,0:40:99:0|1:3479162_A_ACAG:1032,0,473,1074,552,1626:3479162:6,8,14,12 +chrX 3479165 . A . . END=3479988 GT:DP:GQ:MIN_DP:PL 0/0:45:31:45:0,31,1245 +chrX 3479989 . AAAG A, 796.60 . AS_QUALapprox=|804|0;AS_VarDP=26|21|0;BaseQRankSum=0.794;DP=48;MQRankSum=0.000;QUALapprox=804;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=1.821;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,21,0:47:99:0|1:3479989_AAAG_A:804,0,1028,882,1092,1974:3479989:10,16,11,10 +chrX 3479993 . A . . END=3480374 GT:DP:GQ:MIN_DP:PL 0/0:56:83:56:0,83,1404 +chrX 3480375 . C CT, 383.60 . AS_QUALapprox=|391|0;AS_VarDP=15|20|0;BaseQRankSum=0.484;DP=52;MQRankSum=0.000;QUALapprox=391;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=0.167;VarDP=35 GT:AD:DP:GQ:PL:SB 0/1:15,20,0:35:99:391,0,277,436,337,773:5,10,9,11 +chrX 3480376 . T . . END=3480389 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,108,1620 +chrX 3480390 . A . . END=3480390 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,1286 +chrX 3480391 . A . . END=3481018 GT:DP:GQ:MIN_DP:PL 0/0:58:86:58:0,86,1373 +chrX 3481019 . G A, 620.64 . AS_QUALapprox=|628|0;AS_VarDP=31|23|0;BaseQRankSum=2.522;DP=54;MQRankSum=0.000;QUALapprox=628;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=0.735;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:31,23,0:54:99:628,0,785,720,855,1575:16,15,12,11 +chrX 3481020 . G . . END=3481818 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 3481819 . AT A,ATTT, 130.60 . AS_QUALapprox=|138|0|0;AS_VarDP=14|12|0|0;BaseQRankSum=0.366;DP=53;MQRankSum=0.000;QUALapprox=138;RAW_GT_COUNT=0,1,0;RAW_MQandDP=188800,53;ReadPosRankSum=0.721;VarDP=26 GT:AD:DP:GQ:PL:SB 0/1:14,12,0,0:26:99:138,0,310,215,270,765,228,322,662,656:3,11,4,8 +chrX 3481821 . T . . END=3482024 GT:DP:GQ:MIN_DP:PL 0/0:44:29:34:0,29,899 +chrX 3482025 . T C, 289.64 . AS_QUALapprox=|297|0;AS_VarDP=18|12|0;BaseQRankSum=0.193;DP=32;MQRankSum=0.000;QUALapprox=297;RAW_GT_COUNT=0,1,0;RAW_MQandDP=115200,32;ReadPosRankSum=-0.254;VarDP=30 GT:AD:DP:GQ:PL:SB 0/1:18,12,0:30:99:297,0,485,351,522,872:11,7,5,7 +chrX 3482026 . C . . END=3482451 GT:DP:GQ:MIN_DP:PL 0/0:46:70:46:0,70,987 +chrX 3482452 . C A, 532.64 . AS_QUALapprox=|540|0;AS_VarDP=25|20|0;BaseQRankSum=0.601;DP=47;MQRankSum=0.000;QUALapprox=540;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=2.410;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:25,20,0:45:99:540,0,690,615,751,1366:10,15,13,7 +chrX 3482453 . C . . END=3482474 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,111,1665 +chrX 3482475 . G A, 556.64 . AS_QUALapprox=|564|0;AS_VarDP=24|20|0;BaseQRankSum=3.460;DP=47;MQRankSum=0.000;QUALapprox=564;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=0.861;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:24,20,0:44:99:564,0,577,635,637,1272:15,9,8,12 +chrX 3482476 . C . . END=3482714 GT:DP:GQ:MIN_DP:PL 0/0:42:72:42:0,72,1080 +chrX 3482715 . CT C,CTTTTTTTT, 422.02 . AS_QUALapprox=|60|363|0;AS_VarDP=0|5|10|0;DP=38;QUALapprox=439;RAW_GT_COUNT=0,0,1;RAW_MQandDP=121504,38;VarDP=15 GT:AD:DP:GQ:PL:SB 1/2:0,5,10,0:15:76:439,379,477,76,0,161,472,444,157,572:0,0,10,5 +chrX 3482717 . T . . END=3482717 GT:DP:GQ:MIN_DP:PL 0/0:41:18:41:0,18,270 +chrX 3482718 . T . . END=3482741 GT:DP:GQ:MIN_DP:PL 0/0:40:21:39:0,21,315 +chrX 3482742 . G . . END=3482748 GT:DP:GQ:MIN_DP:PL 0/0:29:0:29:0,0,209 +chrX 3482749 . T . . END=3482749 GT:DP:GQ:MIN_DP:PL 0/0:31:58:31:0,58,978 +chrX 3482750 . C . . END=3482750 GT:DP:GQ:MIN_DP:PL 0/0:24:3:24:0,3,695 +chrX 3482751 . T . . END=3482953 GT:DP:GQ:MIN_DP:PL 0/0:48:63:48:0,63,765 +chrX 3482954 . C T, 580.64 . AS_QUALapprox=|588|0;AS_VarDP=27|22|0;BaseQRankSum=1.627;DP=54;MQRankSum=0.000;QUALapprox=588;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=0.231;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:27,22,0:49:99:588,0,686,669,752,1421:14,13,8,14 +chrX 3482955 . A . . END=3483462 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,116,1722 +chrX 3483463 . A G, 723.64 . AS_QUALapprox=|731|0;AS_VarDP=31|30|0;BaseQRankSum=-0.017;DP=62;MQRankSum=0.000;QUALapprox=731;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=-1.017;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:31,30,0:61:99:731,0,751,823,840,1663:21,10,16,14 +chrX 3483464 . C . . END=3483701 GT:DP:GQ:MIN_DP:PL 0/0:59:90:59:0,90,1350 +chrX 3483702 . TTTCTTTCTTTC T, 721.60 . AS_QUALapprox=|729|0;AS_VarDP=19|19|0;BaseQRankSum=0.080;DP=41;MQRankSum=1.810;QUALapprox=729;RAW_GT_COUNT=0,1,0;RAW_MQandDP=141370,41;ReadPosRankSum=2.347;VarDP=38 GT:AD:DP:GQ:PL:SB 0/1:19,19,0:38:99:729,0,710,787,767,1553:5,14,8,11 +chrX 3483706 . TTTCTTTCTTTCTTTCTTTC T,*, 708.55 . AS_QUALapprox=|743|0|0;AS_VarDP=0|18|19|0;DP=41;QUALapprox=1505;RAW_GT_COUNT=0,0,1;RAW_MQandDP=141370,41;VarDP=37 GT:AD:DP:GQ:PL:SB 1/2:0,18,19,0:37:99:1505,784,762,724,0,707,1513,804,749,1545:0,0,12,25 +chrX 3483726 . T . . END=3483799 GT:DP:GQ:MIN_DP:PL 0/0:38:56:38:0,56,929 +chrX 3483800 . TTC T, 486.60 . AS_QUALapprox=|494|0;AS_VarDP=20|14|0;BaseQRankSum=1.055;DP=36;MQRankSum=0.896;QUALapprox=494;RAW_GT_COUNT=0,1,0;RAW_MQandDP=123434,36;ReadPosRankSum=0.595;VarDP=34 GT:AD:DP:GQ:PL:SB 0/1:20,14,0:34:99:494,0,737,554,780,1333:8,12,2,12 +chrX 3483803 . T . . END=3483895 GT:DP:GQ:MIN_DP:PL 0/0:28:56:28:0,56,769 +chrX 3483896 . CCTTT C, 433.60 . AS_QUALapprox=|441|0;AS_VarDP=14|12|0;BaseQRankSum=0.627;DP=30;MQRankSum=-1.003;QUALapprox=441;RAW_GT_COUNT=0,1,0;RAW_MQandDP=107649,30;ReadPosRankSum=-1.333;VarDP=26 GT:AD:DP:GQ:PL:SB 0/1:14,12,0:26:99:441,0,492,484,528,1012:4,10,3,9 +chrX 3483901 . C . . END=3483998 GT:DP:GQ:MIN_DP:PL 0/0:50:37:48:0,37,818 +chrX 3483999 . C . . END=3483999 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1255 +chrX 3484000 . T . . END=3484001 GT:DP:GQ:MIN_DP:PL 0/0:54:58:54:0,58,1567 +chrX 3484002 . C CTTCTTTCTTTCT,CTTCTTTCTTTTT, 521.60 . AS_QUALapprox=|529|74|0;AS_VarDP=9|14|0|0;BaseQRankSum=-0.904;DP=42;MQRankSum=-1.095;QUALapprox=529;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147162,42;ReadPosRankSum=0.378;VarDP=23 GT:AD:DP:GQ:PL:SB 0/1:9,14,0,0:23:99:529,0,356,455,413,1183,534,424,1037,1071:6,3,3,11 +chrX 3484003 . T . . END=3484056 GT:DP:GQ:MIN_DP:PL 0/0:40:60:40:0,60,900 +chrX 3484057 . C CTTT, 544.60 . AS_QUALapprox=|552|0;AS_VarDP=19|16|0;BaseQRankSum=-2.288;DP=40;MQRankSum=-0.082;QUALapprox=552;RAW_GT_COUNT=0,1,0;RAW_MQandDP=139881,40;ReadPosRankSum=-0.190;VarDP=35 GT:AD:DP:GQ:PL:SB 0/1:19,16,0:35:99:552,0,714,609,762,1371:8,11,11,5 +chrX 3484058 . T . . END=3484059 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,99,1485 +chrX 3484060 . C . . END=3484061 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,530 +chrX 3484062 . T . . END=3484062 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,103,1469 +chrX 3484063 . C . . END=3484063 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,931 +chrX 3484064 . T . . END=3484489 GT:DP:GQ:MIN_DP:PL 0/0:45:38:44:0,38,1107 +chrX 3484490 . A T, 1876.06 . AS_QUALapprox=|1890|0;AS_VarDP=0|59|0;DP=61;QUALapprox=1890;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1890,176,0,1890,176,1890:0,0,34,25 +chrX 3484491 . T . . END=3484637 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 3484638 . T A, 2010.06 . AS_QUALapprox=|2024|0;AS_VarDP=1|61|0;BaseQRankSum=2.646;DP=65;MQRankSum=0.000;QUALapprox=2024;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;ReadPosRankSum=1.453;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:1,61,0:62:99:2024,162,0,2027,183,2048:1,0,28,33 +chrX 3484639 . T . . END=3484706 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,115,1641 +chrX 3484707 . A G, 1173.64 . AS_QUALapprox=|1181|0;AS_VarDP=26|40|0;BaseQRankSum=1.933;DP=70;MQRankSum=0.000;QUALapprox=1181;RAW_GT_COUNT=0,1,0;RAW_MQandDP=252000,70;ReadPosRankSum=-1.076;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:26,40,0:66:99:1181,0,665,1259,786,2045:7,19,19,21 +chrX 3484708 . T . . END=3485350 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,108,1768 +chrX 3485351 . C T, 844.64 . AS_QUALapprox=|852|0;AS_VarDP=35|32|0;BaseQRankSum=1.751;DP=68;MQRankSum=0.000;QUALapprox=852;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=-0.578;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:35,32,0:67:99:852,0,855,956,952,1908:20,15,15,17 +chrX 3485352 . G . . END=3486050 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,119,1559 +chrX 3486051 . A G, 782.64 . AS_QUALapprox=|790|0;AS_VarDP=21|30|0;BaseQRankSum=-2.338;DP=53;MQRankSum=0.000;QUALapprox=790;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=-0.871;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:21,30,0:51:99:790,0,578,853,667,1520:10,11,13,17 +chrX 3486052 . A . . END=3486139 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 3486140 . A C, 888.64 . AS_QUALapprox=|896|0;AS_VarDP=19|30|0;BaseQRankSum=2.617;DP=50;MQRankSum=0.000;QUALapprox=896;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=-0.349;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:19,30,0:49:99:896,0,473,953,563,1516:12,7,15,15 +chrX 3486141 . T . . END=3486735 GT:DP:GQ:MIN_DP:PL 0/0:54:83:54:0,83,1204 +chrX 3486736 . A G, 782.64 . AS_QUALapprox=|790|0;AS_VarDP=33|31|0;BaseQRankSum=-1.276;DP=68;MQRankSum=-0.606;QUALapprox=790;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237279,68;ReadPosRankSum=-1.035;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:33,31,0:64:99:790,0,886,889,978,1867:20,13,20,11 +chrX 3486737 . T . . END=3487270 GT:DP:GQ:MIN_DP:PL 0/0:65:78:65:0,78,1207 +chrX 3487271 . TATATATTATTATGTACAATAATATATAATATATTATTATGTACAATAATATATA T, 1155.60 . AS_QUALapprox=|1163|0;AS_VarDP=29|30|0;BaseQRankSum=-0.235;DP=77;MQRankSum=-2.000;QUALapprox=1163;RAW_GT_COUNT=0,1,0;RAW_MQandDP=267516,77;ReadPosRankSum=0.775;VarDP=59 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,30,0:59:99:0|1:3487271_TATATATTATTATGTACAATAATATATAATATATTATTATGTACAATAATATATA_T:1163,0,1118,1251,1212,2463:3487271:11,18,13,17 +chrX 3487326 . A . . END=3487357 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,102,1530 +chrX 3487358 . TTA T, 565.60 . AS_QUALapprox=|573|0;AS_VarDP=40|22|0;BaseQRankSum=-0.605;DP=62;MQRankSum=1.537;QUALapprox=573;RAW_GT_COUNT=0,1,0;RAW_MQandDP=213516,62;ReadPosRankSum=-0.088;VarDP=62 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:40,22,0:62:99:1|0:3487271_TATATATTATTATGTACAATAATATATAATATATTATTATGTACAATAATATATA_T:573,0,1585,694,1650,2344:3487271:19,21,10,12 +chrX 3487361 . T . . END=3487361 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,117,1755 +chrX 3487362 . GTACAATAATATATAATATATTA G, 546.60 . AS_QUALapprox=|554|0;AS_VarDP=47|22|0;BaseQRankSum=-0.333;DP=70;MQRankSum=1.415;QUALapprox=554;RAW_GT_COUNT=0,1,0;RAW_MQandDP=242316,70;ReadPosRankSum=-0.037;VarDP=69 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:47,22,0:69:99:1|0:3487271_TATATATTATTATGTACAATAATATATAATATATTATTATGTACAATAATATATA_T:554,0,1753,694,1818,2512:3487271:23,24,10,12 +chrX 3487385 . T . . END=3487567 GT:DP:GQ:MIN_DP:PL 0/0:44:29:41:0,29,1126 +chrX 3487568 . A T, 592.64 . AS_QUALapprox=|600|0;AS_VarDP=37|23|0;BaseQRankSum=1.560;DP=62;MQRankSum=0.000;QUALapprox=600;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=0.700;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:37,23,0:60:99:600,0,984,710,1053,1764:22,15,10,13 +chrX 3487569 . A . . END=3487625 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 3487626 . T C, 510.64 . AS_QUALapprox=|518|0;AS_VarDP=32|23|0;BaseQRankSum=-2.304;DP=58;MQRankSum=0.000;QUALapprox=518;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-0.521;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:32,23,0:55:99:518,0,895,614,964,1578:19,13,10,13 +chrX 3487627 . A . . END=3488002 GT:DP:GQ:MIN_DP:PL 0/0:52:72:52:0,72,1023 +chrX 3488003 . CATATA C, 727.60 . AS_QUALapprox=|735|0;AS_VarDP=21|19|0;BaseQRankSum=-0.421;DP=46;MQRankSum=0.000;QUALapprox=735;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=2.322;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:21,19,0:40:99:735,0,824,798,882,1680:5,16,10,9 +chrX 3488009 . A . . END=3488048 GT:DP:GQ:MIN_DP:PL 0/0:41:89:41:0,89,1150 +chrX 3488049 . A G, 436.64 . AS_QUALapprox=|444|0;AS_VarDP=23|19|0;BaseQRankSum=-0.857;DP=42;MQRankSum=0.000;QUALapprox=444;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151200,42;ReadPosRankSum=-0.455;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:23,19,0:42:99:444,0,879,514,935,1449:11,12,8,11 +chrX 3488050 . T . . END=3488064 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,111,1665 +chrX 3488065 . TATA T, 800.60 . AS_QUALapprox=|808|0;AS_VarDP=21|21|0;BaseQRankSum=-2.004;DP=43;MQRankSum=0.000;QUALapprox=808;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154800,43;ReadPosRankSum=0.300;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:21,21,0:42:99:808,0,809,871,872,1744:9,12,9,12 +chrX 3488069 . A . . END=3488108 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,108,1430 +chrX 3488109 . C T, 545.64 . AS_QUALapprox=|553|0;AS_VarDP=29|22|0;BaseQRankSum=-0.296;DP=52;MQRankSum=0.092;QUALapprox=553;RAW_GT_COUNT=0,1,0;RAW_MQandDP=181245,52;ReadPosRankSum=-1.313;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:29,22,0:51:99:553,0,750,638,817,1455:14,15,10,12 +chrX 3488110 . T . . END=3488751 GT:DP:GQ:MIN_DP:PL 0/0:55:77:55:0,77,1055 +chrX 3488752 . TATA T, 787.60 . AS_QUALapprox=|795|0;AS_VarDP=24|21|0;BaseQRankSum=-0.581;DP=46;MQRankSum=0.000;QUALapprox=795;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=1.457;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:24,21,0:45:99:795,0,934,867,997,1864:12,12,10,11 +chrX 3488756 . A . . END=3488862 GT:DP:GQ:MIN_DP:PL 0/0:39:67:39:0,67,1023 +chrX 3488863 . CACTT C, 680.60 . AS_QUALapprox=|688|0;AS_VarDP=23|19|0;BaseQRankSum=-0.344;DP=42;MQRankSum=0.000;QUALapprox=688;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151200,42;ReadPosRankSum=-2.211;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:23,19,0:42:99:688,0,897,757,954,1712:11,12,8,11 +chrX 3488868 . A . . END=3489130 GT:DP:GQ:MIN_DP:PL 0/0:49:76:49:0,76,1171 +chrX 3489131 . T C, 905.64 . AS_QUALapprox=|913|0;AS_VarDP=25|25|0;BaseQRankSum=0.549;DP=51;MQRankSum=0.000;QUALapprox=913;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=0.760;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,25,0:50:99:0|1:3489131_T_C:913,0,893,989,969,1957:3489131:10,15,13,12 +chrX 3489132 . T . . END=3489149 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,120,1800 +chrX 3489150 . A G, 883.64 . AS_QUALapprox=|891|0;AS_VarDP=22|24|0;BaseQRankSum=-1.680;DP=46;MQRankSum=0.000;QUALapprox=891;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=1.211;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,24,0:46:99:0|1:3489131_T_C:891,0,831,957,903,1860:3489131:9,13,13,11 +chrX 3489151 . T . . END=3489317 GT:DP:GQ:MIN_DP:PL 0/0:42:74:42:0,74,957 +chrX 3489318 . G A, 322.64 . AS_QUALapprox=|330|0;AS_VarDP=14|15|0;BaseQRankSum=-1.642;DP=32;MQRankSum=0.000;QUALapprox=330;RAW_GT_COUNT=0,1,0;RAW_MQandDP=115200,32;ReadPosRankSum=0.349;VarDP=29 GT:AD:DP:GQ:PL:SB 0/1:14,15,0:29:99:330,0,379,372,422,794:8,6,10,5 +chrX 3489319 . A . . END=3490773 GT:DP:GQ:MIN_DP:PL 0/0:55:63:55:0,63,758 +chrX 3490774 . T C, 985.64 . AS_QUALapprox=|993|0;AS_VarDP=24|37|0;BaseQRankSum=-2.915;DP=62;MQRankSum=0.000;QUALapprox=993;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=0.066;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:24,37,0:61:99:993,0,651,1065,762,1827:15,9,22,15 +chrX 3490775 . G . . END=3491238 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 3491239 . C A, 651.64 . AS_QUALapprox=|659|0;AS_VarDP=31|24|0;BaseQRankSum=0.410;DP=57;MQRankSum=0.000;QUALapprox=659;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=1.087;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:31,24,0:55:99:659,0,877,752,950,1702:16,15,11,13 +chrX 3491240 . C . . END=3491295 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 3491296 . T C, 586.64 . AS_QUALapprox=|594|0;AS_VarDP=32|23|0;BaseQRankSum=0.467;DP=55;MQRankSum=0.000;QUALapprox=594;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=0.205;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:32,23,0:55:99:594,0,862,690,931,1621:15,17,13,10 +chrX 3491297 . A . . END=3491522 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 3491523 . C T, 793.64 . AS_QUALapprox=|801|0;AS_VarDP=32|30|0;BaseQRankSum=1.079;DP=65;MQRankSum=0.000;QUALapprox=801;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=-2.713;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:32,30,0:62:99:801,0,845,897,935,1832:18,14,19,11 +chrX 3491524 . A . . END=3491698 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,119,1800 +chrX 3491699 . G A, 1500.06 . AS_QUALapprox=|1514|0;AS_VarDP=0|45|0;DP=48;QUALapprox=1514;RAW_GT_COUNT=0,0,1;RAW_MQandDP=168345,48;VarDP=45 GT:AD:DP:GQ:PL:SB 1/1:0,45,0:45:99:1514,135,0,1514,135,1514:0,0,19,26 +chrX 3491700 . G . . END=3491935 GT:DP:GQ:MIN_DP:PL 0/0:52:68:52:0,68,1189 +chrX 3491936 . G A, 1649.06 . AS_QUALapprox=|1663|0;AS_VarDP=0|49|0;DP=50;QUALapprox=1663;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1663,147,0,1663,147,1663:0,0,22,27 +chrX 3491937 . A . . END=3492627 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,107,1524 +chrX 3492628 . A G, 646.64 . AS_QUALapprox=|654|0;AS_VarDP=31|27|0;BaseQRankSum=-2.752;DP=58;MQRankSum=0.000;QUALapprox=654;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=0.008;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:31,27,0:58:99:654,0,894,748,974,1722:21,10,11,16 +chrX 3492629 . A . . END=3492786 GT:DP:GQ:MIN_DP:PL 0/0:56:98:56:0,98,1588 +chrX 3492787 . G C, 772.64 . AS_QUALapprox=|780|0;AS_VarDP=26|30|0;BaseQRankSum=-2.295;DP=58;MQRankSum=0.000;QUALapprox=780;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-0.025;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:26,30,0:56:99:780,0,726,858,816,1673:9,17,13,17 +chrX 3492788 . A . . END=3493708 GT:DP:GQ:MIN_DP:PL 0/0:61:51:61:0,51,1345 +chrX 3493709 . A . . END=3493709 GT:DP:GQ:MIN_DP:PL 0/0:59:4:59:0,4,1414 +chrX 3493710 . A . . END=3493728 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 3493729 . C . . END=3493729 GT:DP:GQ:MIN_DP:PL 0/0:54:14:54:0,14,1451 +chrX 3493730 . C . . END=3494491 GT:DP:GQ:MIN_DP:PL 0/0:54:53:54:0,53,1285 +chrX 3494492 . C T, 1066.64 . AS_QUALapprox=|1074|0;AS_VarDP=24|39|0;BaseQRankSum=-0.197;DP=64;MQRankSum=0.000;QUALapprox=1074;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=-1.748;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:24,39,0:63:99:1074,0,595,1146,712,1858:12,12,25,14 +chrX 3494493 . A . . END=3495552 GT:DP:GQ:MIN_DP:PL 0/0:56:85:56:0,85,1269 +chrX 3495553 . T C, 640.64 . AS_QUALapprox=|648|0;AS_VarDP=28|27|0;BaseQRankSum=-1.887;DP=55;MQRankSum=0.000;QUALapprox=648;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=0.143;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:28,27,0:55:99:648,0,758,732,839,1571:11,17,13,14 +chrX 3495554 . T . . END=3495822 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,106,1504 +chrX 3495823 . A G, 966.64 . AS_QUALapprox=|974|0;AS_VarDP=22|37|0;BaseQRankSum=-0.705;DP=61;MQRankSum=0.616;QUALapprox=974;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198024,61;ReadPosRankSum=-0.071;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:22,37,0:59:99:974,0,523,1039,634,1673:10,12,17,20 +chrX 3495824 . T . . END=3496583 GT:DP:GQ:MIN_DP:PL 0/0:61:86:61:0,86,1498 +chrX 3496584 . G T, 537.64 . AS_QUALapprox=|545|0;AS_VarDP=34|21|0;BaseQRankSum=1.081;DP=56;MQRankSum=2.387;QUALapprox=545;RAW_GT_COUNT=0,1,0;RAW_MQandDP=185348,56;ReadPosRankSum=-0.537;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:34,21,0:55:99:545,0,942,647,1005,1652:12,22,10,11 +chrX 3496585 . A . . END=3496668 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 3496669 . C T, 836.64 . AS_QUALapprox=|844|0;AS_VarDP=19|29|0;BaseQRankSum=-1.127;DP=53;MQRankSum=0.000;QUALapprox=844;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=0.939;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:19,29,0:48:99:844,0,514,901,602,1502:10,9,19,10 +chrX 3496670 . T . . END=3497668 GT:DP:GQ:MIN_DP:PL 0/0:55:48:55:0,48,1200 +chrX 3497669 . G T, 686.64 . AS_QUALapprox=|694|0;AS_VarDP=19|24|0;BaseQRankSum=0.831;DP=45;MQRankSum=0.000;QUALapprox=694;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=-0.807;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:19,24,0:43:99:694,0,510,751,582,1333:6,13,15,9 +chrX 3497670 . C . . END=3498110 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,108,1525 +chrX 3498111 . A G, 918.64 . AS_QUALapprox=|926|0;AS_VarDP=31|34|0;BaseQRankSum=-0.515;DP=69;MQRankSum=0.000;QUALapprox=926;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=-0.519;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:31,34,0:65:99:926,0,842,1019,944,1964:17,14,19,15 +chrX 3498112 . T . . END=3499331 GT:DP:GQ:MIN_DP:PL 0/0:57:95:57:0,95,1306 +chrX 3499332 . A G, 761.64 . AS_QUALapprox=|769|0;AS_VarDP=28|30|0;BaseQRankSum=-2.079;DP=59;MQRankSum=0.000;QUALapprox=769;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=1.525;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:28,30,0:58:99:769,0,774,853,863,1716:10,18,15,15 +chrX 3499333 . A . . END=3499503 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 3499504 . G T, 560.64 . AS_QUALapprox=|568|0;AS_VarDP=33|23|0;BaseQRankSum=0.742;DP=58;MQRankSum=0.000;QUALapprox=568;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=0.708;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:33,23,0:56:99:568,0,834,665,902,1568:17,16,9,14 +chrX 3499505 . G . . END=3501145 GT:DP:GQ:MIN_DP:PL 0/0:57:94:57:0,94,1539 +chrX 3501146 . T C, 861.64 . AS_QUALapprox=|869|0;AS_VarDP=31|33|0;BaseQRankSum=-1.280;DP=64;MQRankSum=0.000;QUALapprox=869;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=0.007;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:31,33,0:64:99:869,0,855,962,954,1917:18,13,17,16 +chrX 3501147 . T . . END=3501946 GT:DP:GQ:MIN_DP:PL 0/0:53:82:53:0,82,1300 +chrX 3501947 . T C, 781.64 . AS_QUALapprox=|789|0;AS_VarDP=19|29|0;BaseQRankSum=-2.076;DP=49;MQRankSum=0.000;QUALapprox=789;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=0.896;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:19,29,0:48:99:789,0,516,846,603,1449:10,9,17,12 +chrX 3501948 . G . . END=3502236 GT:DP:GQ:MIN_DP:PL 0/0:52:85:52:0,85,1416 +chrX 3502237 . CA C, 1350.03 . AS_QUALapprox=|1364|0;AS_VarDP=0|48|0;DP=59;QUALapprox=1364;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=48 GT:AD:DP:GQ:PL:SB 1/1:0,48,0:48:99:1364,144,0,1364,144,1364:0,0,25,23 +chrX 3502239 . A . . END=3503101 GT:DP:GQ:MIN_DP:PL 0/0:50:74:50:0,74,1042 +chrX 3503102 . G A, 687.64 . AS_QUALapprox=|695|0;AS_VarDP=30|26|0;BaseQRankSum=0.458;DP=58;MQRankSum=0.000;QUALapprox=695;RAW_GT_COUNT=0,1,0;RAW_MQandDP=207904,58;ReadPosRankSum=-2.145;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:30,26,0:56:99:695,0,814,785,893,1678:17,13,13,13 +chrX 3503103 . C . . END=3503277 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 3503278 . C T, 816.64 . AS_QUALapprox=|824|0;AS_VarDP=31|32|0;BaseQRankSum=1.608;DP=65;MQRankSum=0.000;QUALapprox=824;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=-0.378;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:31,32,0:63:99:824,0,693,916,790,1705:17,14,19,13 +chrX 3503279 . G . . END=3503317 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 3503318 . A G, 803.64 . AS_QUALapprox=|811|0;AS_VarDP=28|32|0;BaseQRankSum=-1.355;DP=61;MQRankSum=0.000;QUALapprox=811;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=0.764;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:28,32,0:60:99:811,0,754,895,849,1744:14,14,13,19 +chrX 3503319 . A . . END=3503377 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 3503378 . G A, 908.64 . AS_QUALapprox=|916|0;AS_VarDP=32|34|0;BaseQRankSum=0.410;DP=69;MQRankSum=1.061;QUALapprox=916;RAW_GT_COUNT=0,1,0;RAW_MQandDP=246218,69;ReadPosRankSum=-1.560;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:32,34,0:66:99:916,0,863,1012,965,1977:11,21,12,22 +chrX 3503379 . A . . END=3503477 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 3503478 . C T, 1852.06 . AS_QUALapprox=|1866|0;AS_VarDP=0|57|0;DP=60;QUALapprox=1866;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1866,171,0,1866,171,1866:0,0,26,31 +chrX 3503479 . G . . END=3503580 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 3503581 . A G, 769.64 . AS_QUALapprox=|777|0;AS_VarDP=26|27|0;BaseQRankSum=1.822;DP=56;MQRankSum=0.000;QUALapprox=777;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-1.922;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:26,27,0:53:99:777,0,714,855,796,1651:13,13,12,15 +chrX 3503582 . C . . END=3503625 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 3503626 . C T, 676.64 . AS_QUALapprox=|684|0;AS_VarDP=31|27|0;BaseQRankSum=-1.120;DP=60;MQRankSum=0.000;QUALapprox=684;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=0.086;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:31,27,0:58:99:684,0,838,777,919,1697:18,13,12,15 +chrX 3503627 . G . . END=3504087 GT:DP:GQ:MIN_DP:PL 0/0:58:89:58:0,89,1237 +chrX 3504088 . G C, 559.64 . AS_QUALapprox=|567|0;AS_VarDP=18|23|0;BaseQRankSum=0.473;DP=43;MQRankSum=0.000;QUALapprox=567;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154800,43;ReadPosRankSum=-0.618;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:18,23,0:41:99:567,0,408,621,477,1097:9,9,11,12 +chrX 3504089 . G . . END=3505308 GT:DP:GQ:MIN_DP:PL 0/0:55:73:55:0,73,1320 +chrX 3505309 . A G, 667.64 . AS_QUALapprox=|675|0;AS_VarDP=22|24|0;BaseQRankSum=0.694;DP=46;MQRankSum=0.000;QUALapprox=675;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=-0.836;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:22,24,0:46:99:675,0,597,741,669,1410:10,12,8,16 +chrX 3505310 . G . . END=3506291 GT:DP:GQ:MIN_DP:PL 0/0:45:30:38:0,30,1113 +chrX 3506292 . C . . END=3506292 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,1058 +chrX 3506293 . A . . END=3506295 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 3506296 . T . . END=3506296 GT:DP:GQ:MIN_DP:PL 0/0:58:0:58:0,0,871 +chrX 3506297 . A . . END=3506300 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 3506301 . G . . END=3506301 GT:DP:GQ:MIN_DP:PL 0/0:53:0:53:0,0,861 +chrX 3506302 . CA C,CAA, 212.01 . AS_QUALapprox=|9|200|0;AS_VarDP=3|5|15|0;BaseQRankSum=0.696;DP=46;MQRankSum=-0.467;QUALapprox=229;RAW_GT_COUNT=0,0,1;RAW_MQandDP=161600,46;ReadPosRankSum=0.302;VarDP=23 GT:AD:DP:GQ:PL:SB 1/2:3,5,15,0:23:29:229,220,414,29,0,38,279,353,82,395:1,2,9,11 +chrX 3506304 . A . . END=3508096 GT:DP:GQ:MIN_DP:PL 0/0:53:40:53:0,40,1195 +chrX 3508097 . CT C, 368.60 . AS_QUALapprox=|376|0;AS_VarDP=28|18|0;BaseQRankSum=1.178;DP=57;MQRankSum=0.000;QUALapprox=376;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-0.901;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:28,18,0:46:99:376,0,657,461,711,1172:13,15,10,8 +chrX 3508099 . T . . END=3508581 GT:DP:GQ:MIN_DP:PL 0/0:57:74:57:0,74,1495 +chrX 3508582 . C T, 921.64 . AS_QUALapprox=|929|0;AS_VarDP=26|33|0;BaseQRankSum=0.373;DP=61;MQRankSum=0.000;QUALapprox=929;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=1.497;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:26,33,0:59:99:929,0,686,1007,785,1793:13,13,15,18 +chrX 3508583 . A . . END=3509589 GT:DP:GQ:MIN_DP:PL 0/0:53:85:53:0,85,1172 +chrX 3509590 . C T, 481.64 . AS_QUALapprox=|489|0;AS_VarDP=37|20|0;BaseQRankSum=-0.623;DP=59;MQRankSum=0.000;QUALapprox=489;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=0.636;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:37,20,0:57:99:489,0,1090,600,1150,1750:18,19,6,14 +chrX 3509591 . A . . END=3511586 GT:DP:GQ:MIN_DP:PL 0/0:60:40:60:0,40,1032 +chrX 3511587 . A . . END=3511588 GT:DP:GQ:MIN_DP:PL 0/0:40:1:40:0,1,1011 +chrX 3511589 . A . . END=3511591 GT:DP:GQ:MIN_DP:PL 0/0:38:64:38:0,64,1081 +chrX 3511592 . C . . END=3511592 GT:DP:GQ:MIN_DP:PL 0/0:38:15:38:0,15,1013 +chrX 3511593 . T . . END=3511596 GT:DP:GQ:MIN_DP:PL 0/0:36:27:33:0,27,870 +chrX 3511597 . T . . END=3511597 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,857 +chrX 3511598 . C CA, 266.60 . AS_QUALapprox=|274|0;AS_VarDP=9|16|0;BaseQRankSum=-1.638;DP=41;MQRankSum=-1.023;QUALapprox=274;RAW_GT_COUNT=0,1,0;RAW_MQandDP=137064,41;ReadPosRankSum=-3.252;VarDP=25 GT:AD:DP:GQ:PL:SB 0/1:9,16,0:25:99:274,0,131,301,178,478:5,4,6,10 +chrX 3511599 . A . . END=3514031 GT:DP:GQ:MIN_DP:PL 0/0:55:83:55:0,83,1147 +chrX 3514032 . G A, 982.64 . AS_QUALapprox=|990|0;AS_VarDP=28|38|0;BaseQRankSum=0.766;DP=67;MQRankSum=0.000;QUALapprox=990;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=0.655;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:28,38,0:66:99:990,0,601,1072,715,1787:12,16,24,14 +chrX 3514033 . T . . END=3514409 GT:DP:GQ:MIN_DP:PL 0/0:61:89:61:0,89,1400 +chrX 3514410 . G T, 2052.06 . AS_QUALapprox=|2066|0;AS_VarDP=0|60|0;DP=61;QUALapprox=2066;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:2066,181,0,2066,181,2066:0,0,32,28 +chrX 3514411 . A . . END=3514470 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 3514471 . T A, 852.64 . AS_QUALapprox=|860|0;AS_VarDP=34|33|0;BaseQRankSum=-0.686;DP=70;MQRankSum=0.000;QUALapprox=860;RAW_GT_COUNT=0,1,0;RAW_MQandDP=252000,70;ReadPosRankSum=0.364;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:34,33,0:67:99:860,0,910,962,1009,1971:24,10,20,13 +chrX 3514472 . C . . END=3515213 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,109,1570 +chrX 3515214 . C A, 385.64 . AS_QUALapprox=|393|0;AS_VarDP=38|17|0;BaseQRankSum=0.302;DP=57;MQRankSum=0.708;QUALapprox=393;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205081,57;ReadPosRankSum=-0.118;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:38,17,0:55:99:393,0,1074,508,1125,1633:24,14,10,7 +chrX 3515215 . C . . END=3515702 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,105,1449 +chrX 3515703 . CATCT C, 1400.03 . AS_QUALapprox=|1414|0;AS_VarDP=0|32|0;DP=46;QUALapprox=1414;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;VarDP=32 GT:AD:DP:GQ:PL:SB 1/1:0,32,0:32:97:1414,97,0,1414,97,1414:0,0,17,15 +chrX 3515708 . A . . END=3515803 GT:DP:GQ:MIN_DP:PL 0/0:45:82:45:0,82,1265 +chrX 3515804 . ATATC A, 869.60 . AS_QUALapprox=|877|0;AS_VarDP=26|23|0;BaseQRankSum=-0.217;DP=58;MQRankSum=0.000;QUALapprox=877;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=0.458;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:26,23,0:49:99:877,0,1001,955,1071,2026:15,11,11,12 +chrX 3515809 . T . . END=3516826 GT:DP:GQ:MIN_DP:PL 0/0:54:76:54:0,76,1365 +chrX 3516827 . AT A,ATT, 22.60 . AS_QUALapprox=|30|0|0;AS_VarDP=7|4|1|0;BaseQRankSum=-0.349;DP=40;MQRankSum=0.000;QUALapprox=30;RAW_GT_COUNT=0,1,0;RAW_MQandDP=144000,40;ReadPosRankSum=-0.389;VarDP=12 GT:AD:DP:GQ:PL:SB 0/1:7,4,1,0:12:30:30,0,197,45,99,188,73,170,192,242:3,4,2,3 +chrX 3516829 . T . . END=3516850 GT:DP:GQ:MIN_DP:PL 0/0:48:69:48:0,69,1035 +chrX 3516851 . G . . END=3516851 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,872 +chrX 3516852 . G . . END=3517357 GT:DP:GQ:MIN_DP:PL 0/0:35:28:34:0,28,859 +chrX 3517358 . C G, 512.64 . AS_QUALapprox=|520|0;AS_VarDP=24|21|0;BaseQRankSum=-0.992;DP=47;MQRankSum=0.000;QUALapprox=520;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=0.922;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:24,21,0:45:99:520,0,659,592,722,1314:14,10,10,11 +chrX 3517359 . A . . END=3517567 GT:DP:GQ:MIN_DP:PL 0/0:45:80:45:0,80,1306 +chrX 3517568 . C T, 569.64 . AS_QUALapprox=|577|0;AS_VarDP=28|22|0;BaseQRankSum=0.812;DP=51;MQRankSum=0.000;QUALapprox=577;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=0.010;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:28,22,0:50:99:577,0,771,661,837,1498:12,16,14,8 +chrX 3517569 . T . . END=3518513 GT:DP:GQ:MIN_DP:PL 0/0:57:79:57:0,79,1230 +chrX 3518514 . G A, 550.64 . AS_QUALapprox=|558|0;AS_VarDP=33|21|0;BaseQRankSum=2.070;DP=55;MQRankSum=0.000;QUALapprox=558;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-1.039;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:33,21,0:54:99:558,0,895,657,958,1615:14,19,9,12 +chrX 3518515 . T . . END=3519302 GT:DP:GQ:MIN_DP:PL 0/0:52:89:52:0,89,1105 +chrX 3519303 . TGAGA T,TGA, 1102.60 . AS_QUALapprox=|276|1110|0;AS_VarDP=21|0|25|0;BaseQRankSum=-1.559;DP=63;MQRankSum=0.000;QUALapprox=1110;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=0.034;VarDP=46 GT:AD:DP:GQ:PL:SB 0/2:21,0,25,0:46:99:1110,834,1758,0,881,975,1047,1780,993,2008:11,10,14,11 +chrX 3519307 . A *,T, 854.04 . AS_QUALapprox=|0|1110|0;AS_VarDP=21|0|25|0;BaseQRankSum=-1.873;DP=63;MQRankSum=0.000;QUALapprox=1110;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=0.166;VarDP=46 GT:AD:DP:GQ:PL:SB 0/2:21,0,25,0:46:99:1110,834,1758,0,881,975,1047,1780,993,2008:11,10,14,11 +chrX 3519308 . G . . END=3519396 GT:DP:GQ:MIN_DP:PL 0/0:63:98:63:0,98,1800 +chrX 3519397 . C T, 944.64 . AS_QUALapprox=|952|0;AS_VarDP=28|35|0;BaseQRankSum=-0.741;DP=64;MQRankSum=0.000;QUALapprox=952;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=0.775;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:28,35,0:63:99:952,0,754,1037,859,1896:13,15,18,17 +chrX 3519398 . A . . END=3520903 GT:DP:GQ:MIN_DP:PL 0/0:57:58:57:0,58,958 +chrX 3520904 . G A, 618.64 . AS_QUALapprox=|626|0;AS_VarDP=22|24|0;BaseQRankSum=-1.246;DP=48;MQRankSum=0.000;QUALapprox=626;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=0.231;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:22,24,0:46:99:626,0,595,692,668,1359:15,7,11,13 +chrX 3520905 . G . . END=3521957 GT:DP:GQ:MIN_DP:PL 0/0:53:91:53:0,91,1415 +chrX 3521958 . C G, 911.64 . AS_QUALapprox=|919|0;AS_VarDP=40|25|0;BaseQRankSum=2.042;DP=67;MQRankSum=0.000;QUALapprox=919;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=1.832;VarDP=65 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:40,25,0:65:99:0|1:3521958_C_G:919,0,1532,1040,1607,2647:3521958:20,20,13,12 +chrX 3521959 . A . . END=3521961 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 3521962 . G A, 933.64 . AS_QUALapprox=|941|0;AS_VarDP=40|26|0;BaseQRankSum=1.162;DP=69;MQRankSum=0.000;QUALapprox=941;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=0.657;VarDP=66 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:40,26,0:66:99:0|1:3521958_C_G:941,0,1529,1061,1607,2669:3521958:20,20,14,12 +chrX 3521963 . C . . END=3523022 GT:DP:GQ:MIN_DP:PL 0/0:48:71:48:0,71,983 +chrX 3523023 . A C, 746.64 . AS_QUALapprox=|754|0;AS_VarDP=19|29|0;BaseQRankSum=-1.208;DP=50;MQRankSum=0.000;QUALapprox=754;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=0.411;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:19,29,0:48:99:754,0,476,811,563,1374:8,11,14,15 +chrX 3523024 . T . . END=3523606 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,107,1406 +chrX 3523607 . C T, 516.64 . AS_QUALapprox=|524|0;AS_VarDP=31|22|0;BaseQRankSum=-0.806;DP=54;MQRankSum=0.000;QUALapprox=524;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=0.641;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:31,22,0:53:99:524,0,838,617,904,1521:14,17,10,12 +chrX 3523608 . C . . END=3523878 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,105,1385 +chrX 3523879 . T C, 634.64 . AS_QUALapprox=|642|0;AS_VarDP=29|25|0;BaseQRankSum=0.820;DP=57;MQRankSum=0.000;QUALapprox=642;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-1.458;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:29,25,0:54:99:642,0,756,729,831,1560:19,10,15,10 +chrX 3523880 . A . . END=3524197 GT:DP:GQ:MIN_DP:PL 0/0:46:66:46:0,66,972 +chrX 3524198 . C CT, 361.60 . AS_QUALapprox=|369|0;AS_VarDP=21|16|0;BaseQRankSum=-0.400;DP=44;MQRankSum=0.000;QUALapprox=369;RAW_GT_COUNT=0,1,0;RAW_MQandDP=156400,44;ReadPosRankSum=-0.353;VarDP=37 GT:AD:DP:GQ:PL:SB 0/1:21,16,0:37:99:369,0,680,432,728,1160:7,14,6,10 +chrX 3524199 . C CT,T, 550.64 . AS_QUALapprox=|144|558|0;AS_VarDP=16|2|16|0;BaseQRankSum=1.650;DP=42;MQRankSum=0.000;QUALapprox=558;RAW_GT_COUNT=0,1,0;RAW_MQandDP=149200,42;ReadPosRankSum=-0.449;VarDP=34 GT:AD:DP:GQ:PL:SB 0/2:16,2,16,0:34:99:558,414,619,0,248,633,552,705,513,984:5,11,7,11 +chrX 3524200 . T . . END=3524217 GT:DP:GQ:MIN_DP:PL 0/0:43:93:43:0,93,1335 +chrX 3524218 . A . . END=3524218 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,973 +chrX 3524219 . C . . END=3524346 GT:DP:GQ:MIN_DP:PL 0/0:41:33:39:0,33,1148 +chrX 3524347 . G A, 567.64 . AS_QUALapprox=|575|0;AS_VarDP=28|22|0;BaseQRankSum=-1.092;DP=51;MQRankSum=0.000;QUALapprox=575;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-0.811;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:28,22,0:50:99:575,0,787,659,853,1511:13,15,12,10 +chrX 3524348 . G . . END=3524448 GT:DP:GQ:MIN_DP:PL 0/0:55:43:55:0,43,1449 +chrX 3524449 . T . . END=3524450 GT:DP:GQ:MIN_DP:PL 0/0:58:0:58:0,0,950 +chrX 3524451 . A . . END=3524451 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 3524452 . C . . END=3524453 GT:DP:GQ:MIN_DP:PL 0/0:63:0:63:0,0,1244 +chrX 3524454 . A . . END=3524457 GT:DP:GQ:MIN_DP:PL 0/0:65:50:65:0,50,1751 +chrX 3524458 . T . . END=3524458 GT:DP:GQ:MIN_DP:PL 0/0:66:0:66:0,0,1448 +chrX 3524459 . C . . END=3524460 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 3524461 . C . . END=3524462 GT:DP:GQ:MIN_DP:PL 0/0:70:0:70:0,0,1776 +chrX 3524463 . A . . END=3524463 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 3524464 . A . . END=3524464 GT:DP:GQ:MIN_DP:PL 0/0:65:0:65:0,0,846 +chrX 3524465 . C . . END=3524469 GT:DP:GQ:MIN_DP:PL 0/0:76:86:76:0,86,1800 +chrX 3524470 . T . . END=3524470 GT:DP:GQ:MIN_DP:PL 0/0:72:0:72:0,0,1747 +chrX 3524471 . C . . END=3524478 GT:DP:GQ:MIN_DP:PL 0/0:80:54:80:0,54,1800 +chrX 3524479 . T . . END=3524479 GT:DP:GQ:MIN_DP:PL 0/0:79:0:79:0,0,1966 +chrX 3524480 . C . . END=3524484 GT:DP:GQ:MIN_DP:PL 0/0:81:32:80:0,32,1800 +chrX 3524485 . T . . END=3524485 GT:DP:GQ:MIN_DP:PL 0/0:74:0:74:0,0,1914 +chrX 3524486 . C . . END=3524487 GT:DP:GQ:MIN_DP:PL 0/0:81:99:81:0,120,1800 +chrX 3524488 . C . . END=3524488 GT:DP:GQ:MIN_DP:PL 0/0:81:0:81:0,0,1831 +chrX 3524489 . C . . END=3524490 GT:DP:GQ:MIN_DP:PL 0/0:83:99:83:0,120,1800 +chrX 3524491 . C . . END=3524491 GT:DP:GQ:MIN_DP:PL 0/0:80:17:80:0,17,2194 +chrX 3524492 . C . . END=3524493 GT:DP:GQ:MIN_DP:PL 0/0:85:41:85:0,41,1800 +chrX 3524494 . T . . END=3524494 GT:DP:GQ:MIN_DP:PL 0/0:80:0:80:0,0,1992 +chrX 3524495 . C . . END=3524499 GT:DP:GQ:MIN_DP:PL 0/0:85:99:85:0,110,1800 +chrX 3524500 . T . . END=3524500 GT:DP:GQ:MIN_DP:PL 0/0:78:0:78:0,0,1754 +chrX 3524501 . C . . END=3524502 GT:DP:GQ:MIN_DP:PL 0/0:86:99:86:0,120,1800 +chrX 3524503 . C . . END=3524503 GT:DP:GQ:MIN_DP:PL 0/0:85:12:85:0,12,2288 +chrX 3524504 . C . . END=3524508 GT:DP:GQ:MIN_DP:PL 0/0:86:52:68:0,52,1173 +chrX 3524509 . C . . END=3524509 GT:DP:GQ:MIN_DP:PL 0/0:86:0:86:0,0,2214 +chrX 3524510 . C . . END=3524520 GT:DP:GQ:MIN_DP:PL 0/0:91:26:90:0,26,1800 +chrX 3524521 . T . . END=3524521 GT:DP:GQ:MIN_DP:PL 0/0:88:0:88:0,0,2031 +chrX 3524522 . C . . END=3524523 GT:DP:GQ:MIN_DP:PL 0/0:97:99:97:0,120,1800 +chrX 3524524 . C . . END=3524524 GT:DP:GQ:MIN_DP:PL 0/0:91:0:91:0,0,2238 +chrX 3524525 . C . . END=3524526 GT:DP:GQ:MIN_DP:PL 0/0:96:68:96:0,68,1800 +chrX 3524527 . C . . END=3524527 GT:DP:GQ:MIN_DP:PL 0/0:86:0:86:0,0,2013 +chrX 3524528 . C . . END=3524529 GT:DP:GQ:MIN_DP:PL 0/0:95:36:93:0,36,2445 +chrX 3524530 . C . . END=3524531 GT:DP:GQ:MIN_DP:PL 0/0:92:0:92:0,0,1974 +chrX 3524532 . A . . END=3524532 GT:DP:GQ:MIN_DP:PL 0/0:96:89:96:0,89,2588 +chrX 3524533 . T . . END=3524533 GT:DP:GQ:MIN_DP:PL 0/0:83:0:83:0,0,1014 +chrX 3524534 . C . . END=3524538 GT:DP:GQ:MIN_DP:PL 0/0:96:29:91:0,29,1800 +chrX 3524539 . T . . END=3524539 GT:DP:GQ:MIN_DP:PL 0/0:82:0:82:0,0,1385 +chrX 3524540 . C . . END=3524541 GT:DP:GQ:MIN_DP:PL 0/0:98:86:98:0,86,1800 +chrX 3524542 . C . . END=3524542 GT:DP:GQ:MIN_DP:PL 0/0:89:19:89:0,19,2267 +chrX 3524543 . C . . END=3524544 GT:DP:GQ:MIN_DP:PL 0/0:100:99:100:0,120,1800 +chrX 3524545 . T . . END=3524545 GT:DP:GQ:MIN_DP:PL 0/0:85:0:85:0,0,1915 +chrX 3524546 . C . . END=3524547 GT:DP:GQ:MIN_DP:PL 0/0:100:99:100:0,120,1800 +chrX 3524548 . C . . END=3524548 GT:DP:GQ:MIN_DP:PL 0/0:93:0:93:0,0,2010 +chrX 3524549 . C . . END=3524553 GT:DP:GQ:MIN_DP:PL 0/0:102:80:102:0,80,1800 +chrX 3524554 . T . . END=3524554 GT:DP:GQ:MIN_DP:PL 0/0:91:0:91:0,0,1808 +chrX 3524555 . C . . END=3524562 GT:DP:GQ:MIN_DP:PL 0/0:102:99:102:0,103,1800 +chrX 3524563 . T . . END=3524563 GT:DP:GQ:MIN_DP:PL 0/0:85:0:85:0,0,1469 +chrX 3524564 . C . . END=3524571 GT:DP:GQ:MIN_DP:PL 0/0:94:37:79:0,37,1800 +chrX 3524572 . C . . END=3524572 GT:DP:GQ:MIN_DP:PL 0/0:88:0:88:0,0,2093 +chrX 3524573 . C . . END=3524577 GT:DP:GQ:MIN_DP:PL 0/0:91:35:86:0,35,1800 +chrX 3524578 . T . . END=3524578 GT:DP:GQ:MIN_DP:PL 0/0:73:0:73:0,0,1322 +chrX 3524579 . C . . END=3524589 GT:DP:GQ:MIN_DP:PL 0/0:82:21:79:0,21,1800 +chrX 3524590 . T . . END=3524590 GT:DP:GQ:MIN_DP:PL 0/0:68:0:68:0,0,1450 +chrX 3524591 . C . . END=3524592 GT:DP:GQ:MIN_DP:PL 0/0:75:99:75:0,120,1800 +chrX 3524593 . C . . END=3524593 GT:DP:GQ:MIN_DP:PL 0/0:71:0:71:0,0,1921 +chrX 3524594 . C . . END=3524599 GT:DP:GQ:MIN_DP:PL 0/0:70:41:70:0,41,1800 +chrX 3524600 . T . . END=3524600 GT:DP:GQ:MIN_DP:PL 0/0:65:0:65:0,0,175 +chrX 3524601 . A . . END=3524601 GT:DP:GQ:MIN_DP:PL 0/0:65:91:65:0,91,1930 +chrX 3524602 . T . . END=3524602 GT:DP:GQ:MIN_DP:PL 0/0:64:0:64:0,0,1320 +chrX 3524603 . C . . END=3524604 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,120,1800 +chrX 3524605 . C . . END=3524605 GT:DP:GQ:MIN_DP:PL 0/0:64:0:64:0,0,1568 +chrX 3524606 . C . . END=3524607 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 3524608 . C . . END=3524609 GT:DP:GQ:MIN_DP:PL 0/0:65:0:65:0,0,0 +chrX 3524610 . A . . END=3524610 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 3524611 . C . . END=3524612 GT:DP:GQ:MIN_DP:PL 0/0:69:0:69:0,0,1461 +chrX 3524613 . A . . END=3524614 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,119,1800 +chrX 3524615 . C . . END=3524615 GT:DP:GQ:MIN_DP:PL 0/0:74:0:74:0,0,1875 +chrX 3524616 . A . . END=3524616 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,120,1800 +chrX 3524617 . T . . END=3524617 GT:DP:GQ:MIN_DP:PL 0/0:67:0:67:0,0,974 +chrX 3524618 . C . . END=3524622 GT:DP:GQ:MIN_DP:PL 0/0:70:36:70:0,36,1800 +chrX 3524623 . C . . END=3524623 GT:DP:GQ:MIN_DP:PL 0/0:66:0:66:0,0,1558 +chrX 3524624 . C . . END=3524625 GT:DP:GQ:MIN_DP:PL 0/0:73:99:73:0,120,1800 +chrX 3524626 . C CCACCAT, 386.60 . AS_QUALapprox=|394|0;AS_VarDP=5|10|0;BaseQRankSum=0.000;DP=29;MQRankSum=-0.566;QUALapprox=394;RAW_GT_COUNT=0,1,0;RAW_MQandDP=88337,29;ReadPosRankSum=1.102;VarDP=15 GT:AD:DP:GQ:PL:SB 0/1:5,10,0:15:99:394,0,150,409,180,589:2,3,3,7 +chrX 3524627 . C . . END=3524631 GT:DP:GQ:MIN_DP:PL 0/0:73:25:71:0,25,1800 +chrX 3524632 . T . . END=3524632 GT:DP:GQ:MIN_DP:PL 0/0:59:0:59:0,0,1102 +chrX 3524633 . C . . END=3524634 GT:DP:GQ:MIN_DP:PL 0/0:74:99:74:0,120,1800 +chrX 3524635 . C . . END=3524635 GT:DP:GQ:MIN_DP:PL 0/0:66:0:66:0,0,1625 +chrX 3524636 . C . . END=3524637 GT:DP:GQ:MIN_DP:PL 0/0:74:99:74:0,120,1800 +chrX 3524638 . T . . END=3524638 GT:DP:GQ:MIN_DP:PL 0/0:60:0:60:0,0,1306 +chrX 3524639 . C . . END=3524640 GT:DP:GQ:MIN_DP:PL 0/0:74:74:74:0,74,1959 +chrX 3524641 . C . . END=3524641 GT:DP:GQ:MIN_DP:PL 0/0:65:0:65:0,0,1244 +chrX 3524642 . C . . END=3524643 GT:DP:GQ:MIN_DP:PL 0/0:73:28:72:0,28,1854 +chrX 3524644 . C . . END=3524644 GT:DP:GQ:MIN_DP:PL 0/0:71:0:71:0,0,1482 +chrX 3524645 . C . . END=3524646 GT:DP:GQ:MIN_DP:PL 0/0:77:99:77:0,99,1800 +chrX 3524647 . C . . END=3524647 GT:DP:GQ:MIN_DP:PL 0/0:69:0:69:0,0,1640 +chrX 3524648 . C . . END=3524652 GT:DP:GQ:MIN_DP:PL 0/0:76:74:76:0,74,1800 +chrX 3524653 . T . . END=3524656 GT:DP:GQ:MIN_DP:PL 0/0:70:0:70:0,0,1213 +chrX 3524657 . C . . END=3524658 GT:DP:GQ:MIN_DP:PL 0/0:71:74:71:0,74,1999 +chrX 3524659 . C . . END=3524659 GT:DP:GQ:MIN_DP:PL 0/0:69:0:69:0,0,1544 +chrX 3524660 . C . . END=3524661 GT:DP:GQ:MIN_DP:PL 0/0:73:99:73:0,120,1800 +chrX 3524662 . C . . END=3524662 GT:DP:GQ:MIN_DP:PL 0/0:67:0:67:0,0,1395 +chrX 3524663 . C . . END=3524664 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 3524665 . C . . END=3524665 GT:DP:GQ:MIN_DP:PL 0/0:71:0:71:0,0,1821 +chrX 3524666 . C . . END=3524667 GT:DP:GQ:MIN_DP:PL 0/0:73:97:73:0,97,1800 +chrX 3524668 . T . . END=3524668 GT:DP:GQ:MIN_DP:PL 0/0:66:0:66:0,0,1259 +chrX 3524669 . C . . END=3524676 GT:DP:GQ:MIN_DP:PL 0/0:72:54:72:0,54,1800 +chrX 3524677 . C . . END=3524677 GT:DP:GQ:MIN_DP:PL 0/0:73:0:73:0,0,1799 +chrX 3524678 . C . . END=3524679 GT:DP:GQ:MIN_DP:PL 0/0:79:99:79:0,120,1800 +chrX 3524680 . C . . END=3524680 GT:DP:GQ:MIN_DP:PL 0/0:73:6:73:0,6,1880 +chrX 3524681 . C . . END=3524694 GT:DP:GQ:MIN_DP:PL 0/0:78:52:78:0,52,1564 +chrX 3524695 . T . . END=3524695 GT:DP:GQ:MIN_DP:PL 0/0:72:0:72:0,0,1505 +chrX 3524696 . C . . END=3524697 GT:DP:GQ:MIN_DP:PL 0/0:80:99:80:0,116,1800 +chrX 3524698 . T C, 23.64 . AS_QUALapprox=|31|0;AS_VarDP=18|8|0;BaseQRankSum=0.038;DP=37;MQRankSum=0.834;QUALapprox=31;RAW_GT_COUNT=0,1,0;RAW_MQandDP=89727,37;ReadPosRankSum=0.861;VarDP=26 GT:AD:DP:GQ:PL:SB 0/1:18,8,0:26:31:31,0,485,84,501,585:6,12,4,4 +chrX 3524699 . C . . END=3524709 GT:DP:GQ:MIN_DP:PL 0/0:27:45:27:0,45,675 +chrX 3524710 . T TCACCAC, 218.60 . AS_QUALapprox=|226|0;AS_VarDP=10|8|0;BaseQRankSum=0.970;DP=35;MQRankSum=0.759;QUALapprox=226;RAW_GT_COUNT=0,1,0;RAW_MQandDP=85545,35;ReadPosRankSum=-0.222;VarDP=18 GT:AD:DP:GQ:PL:SB 0/1:10,8,0:18:99:226,0,308,256,330,586:6,4,4,4 +chrX 3524711 . C . . END=3524763 GT:DP:GQ:MIN_DP:PL 0/0:20:36:17:0,36,501 +chrX 3524764 . T TCACCATCACCACCAC, 462.60 . AS_QUALapprox=|470|0;AS_VarDP=8|13|0;BaseQRankSum=1.418;DP=40;MQRankSum=-1.066;QUALapprox=470;RAW_GT_COUNT=0,1,0;RAW_MQandDP=117973,40;ReadPosRankSum=-1.088;VarDP=21 GT:AD:DP:GQ:PL:SB 0/1:8,13,0:21:99:470,0,264,495,302,796:5,3,9,4 +chrX 3524765 . C . . END=3524835 GT:DP:GQ:MIN_DP:PL 0/0:47:41:31:0,41,792 +chrX 3524836 . C . . END=3524836 GT:DP:GQ:MIN_DP:PL 0/0:58:0:58:0,0,1449 +chrX 3524837 . C . . END=3524838 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,114,1710 +chrX 3524839 . C . . END=3524839 GT:DP:GQ:MIN_DP:PL 0/0:56:0:56:0,0,1380 +chrX 3524840 . C . . END=3524844 GT:DP:GQ:MIN_DP:PL 0/0:58:32:57:0,32,1663 +chrX 3524845 . T . . END=3524845 GT:DP:GQ:MIN_DP:PL 0/0:53:0:53:0,0,1185 +chrX 3524846 . C . . END=3524850 GT:DP:GQ:MIN_DP:PL 0/0:55:93:55:0,93,1638 +chrX 3524851 . T . . END=3524851 GT:DP:GQ:MIN_DP:PL 0/0:50:0:50:0,0,1179 +chrX 3524852 . C . . END=3524877 GT:DP:GQ:MIN_DP:PL 0/0:50:43:50:0,43,1388 +chrX 3524878 . C . . END=3524878 GT:DP:GQ:MIN_DP:PL 0/0:48:5:48:0,5,1330 +chrX 3524879 . C . . END=3524885 GT:DP:GQ:MIN_DP:PL 0/0:47:69:47:0,69,1349 +chrX 3524886 . G . . END=3524886 GT:DP:GQ:MIN_DP:PL 0/0:32:12:32:0,12,844 +chrX 3524887 . T . . END=3524896 GT:DP:GQ:MIN_DP:PL 0/0:50:52:50:0,52,1301 +chrX 3524897 . G . . END=3524897 GT:DP:GQ:MIN_DP:PL 0/0:45:2:45:0,2,1157 +chrX 3524898 . G . . END=3524914 GT:DP:GQ:MIN_DP:PL 0/0:56:20:54:0,20,1374 +chrX 3524915 . G . . END=3524915 GT:DP:GQ:MIN_DP:PL 0/0:54:13:54:0,13,1298 +chrX 3524916 . A . . END=3524917 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,102,1691 +chrX 3524918 . T . . END=3524918 GT:DP:GQ:MIN_DP:PL 0/0:56:15:56:0,15,1288 +chrX 3524919 . A . . END=3525132 GT:DP:GQ:MIN_DP:PL 0/0:56:95:56:0,95,1493 +chrX 3525133 . C T, 623.64 . AS_QUALapprox=|631|0;AS_VarDP=23|23|0;BaseQRankSum=0.528;DP=47;MQRankSum=0.000;QUALapprox=631;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=0.758;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:23,23,0:46:99:631,0,592,700,661,1360:13,10,13,10 +chrX 3525134 . C . . END=3525195 GT:DP:GQ:MIN_DP:PL 0/0:35:72:35:0,72,1037 +chrX 3525196 . A ATTTT, 825.60 . AS_QUALapprox=|833|0;AS_VarDP=13|22|0;BaseQRankSum=-0.553;DP=39;MQRankSum=-0.710;QUALapprox=833;RAW_GT_COUNT=0,1,0;RAW_MQandDP=138400,39;ReadPosRankSum=-0.205;VarDP=35 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:13,22,0:35:99:0|1:3525196_A_ATTTT:833,0,426,872,493,1365:3525196:9,4,10,12 +chrX 3525197 . G T, 825.64 . AS_QUALapprox=|833|0;AS_VarDP=13|22|0;BaseQRankSum=1.082;DP=39;MQRankSum=-0.710;QUALapprox=833;RAW_GT_COUNT=0,1,0;RAW_MQandDP=138400,39;ReadPosRankSum=0.656;VarDP=35 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:13,22,0:35:99:0|1:3525196_A_ATTTT:833,0,426,872,493,1365:3525196:9,4,10,12 +chrX 3525198 . T . . END=3527414 GT:DP:GQ:MIN_DP:PL 0/0:32:38:28:0,38,694 +chrX 3527415 . T C, 701.64 . AS_QUALapprox=|709|0;AS_VarDP=21|27|0;BaseQRankSum=-1.441;DP=50;MQRankSum=0.000;QUALapprox=709;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=0.613;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:21,27,0:48:99:709,0,566,772,647,1419:12,9,9,18 +chrX 3527416 . G . . END=3527651 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,118,1643 +chrX 3527652 . C G, 679.64 . AS_QUALapprox=|687|0;AS_VarDP=29|25|0;BaseQRankSum=1.337;DP=56;MQRankSum=0.000;QUALapprox=687;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=1.414;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:29,25,0:54:99:687,0,771,774,846,1620:16,13,11,14 +chrX 3527653 . C . . END=3527804 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,111,1549 +chrX 3527805 . A G, 719.64 . AS_QUALapprox=|727|0;AS_VarDP=26|28|0;BaseQRankSum=-0.311;DP=57;MQRankSum=0.000;QUALapprox=727;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-0.598;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:26,28,0:54:99:727,0,698,805,781,1585:17,9,14,14 +chrX 3527806 . A . . END=3528672 GT:DP:GQ:MIN_DP:PL 0/0:54:30:48:0,30,1249 +chrX 3528673 . T C, 457.64 . AS_QUALapprox=|465|0;AS_VarDP=24|17|0;BaseQRankSum=0.000;DP=44;MQRankSum=0.000;QUALapprox=465;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=0.437;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:24,17,0:41:99:465,0,711,537,762,1300:12,12,8,9 +chrX 3528674 . T . . END=3528802 GT:DP:GQ:MIN_DP:PL 0/0:40:50:39:0,50,1122 +chrX 3528803 . C T, 599.64 . AS_QUALapprox=|607|0;AS_VarDP=19|22|0;BaseQRankSum=-1.243;DP=41;MQRankSum=0.000;QUALapprox=607;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147600,41;ReadPosRankSum=2.250;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:19,22,0:41:99:607,0,528,664,593,1258:10,9,9,13 +chrX 3528804 . A . . END=3528880 GT:DP:GQ:MIN_DP:PL 0/0:40:90:40:0,90,982 +chrX 3528881 . G A, 570.64 . AS_QUALapprox=|578|0;AS_VarDP=17|15|0;BaseQRankSum=1.720;DP=33;MQRankSum=0.000;QUALapprox=578;RAW_GT_COUNT=0,1,0;RAW_MQandDP=118800,33;ReadPosRankSum=-0.661;VarDP=32 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:17,15,0:32:99:0|1:3528881_G_A:578,0,648,629,693,1323:3528881:8,9,8,7 +chrX 3528882 . A . . END=3528888 GT:DP:GQ:MIN_DP:PL 0/0:31:85:31:0,85,1007 +chrX 3528889 . A G, 633.64 . AS_QUALapprox=|641|0;AS_VarDP=17|17|0;BaseQRankSum=-1.393;DP=35;MQRankSum=0.000;QUALapprox=641;RAW_GT_COUNT=0,1,0;RAW_MQandDP=126000,35;ReadPosRankSum=-0.362;VarDP=34 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:17,17,0:34:99:0|1:3528881_G_A:641,0,652,692,704,1396:3528881:8,9,10,7 +chrX 3528890 . A . . END=3529118 GT:DP:GQ:MIN_DP:PL 0/0:55:89:55:0,89,1231 +chrX 3529119 . G T, 509.64 . AS_QUALapprox=|517|0;AS_VarDP=29|19|0;BaseQRankSum=2.304;DP=51;MQRankSum=0.000;QUALapprox=517;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=0.865;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:29,19,0:48:99:517,0,762,603,819,1422:14,15,8,11 +chrX 3529120 . G . . END=3529172 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,119,1549 +chrX 3529173 . A G, 706.64 . AS_QUALapprox=|714|0;AS_VarDP=37|26|0;BaseQRankSum=2.529;DP=66;MQRankSum=0.000;QUALapprox=714;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=1.264;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:37,26,0:63:99:714,0,1017,826,1095,1920:19,18,14,12 +chrX 3529174 . T . . END=3529266 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 3529267 . T A, 470.64 . AS_QUALapprox=|478|0;AS_VarDP=31|18|0;BaseQRankSum=1.596;DP=52;MQRankSum=0.000;QUALapprox=478;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=0.114;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:31,18,0:49:99:478,0,889,572,943,1515:13,18,12,6 +chrX 3529268 . T . . END=3529720 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,100,1440 +chrX 3529721 . C T, 474.64 . AS_QUALapprox=|482|0;AS_VarDP=30|18|0;BaseQRankSum=2.895;DP=49;MQRankSum=0.000;QUALapprox=482;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=1.683;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:30,18,0:48:99:482,0,759,572,813,1385:15,15,11,7 +chrX 3529722 . A . . END=3529880 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,112,1444 +chrX 3529881 . C T, 593.64 . AS_QUALapprox=|601|0;AS_VarDP=26|22|0;BaseQRankSum=2.111;DP=51;MQRankSum=0.000;QUALapprox=601;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=0.962;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:26,22,0:48:99:601,0,652,679,719,1397:18,8,10,12 +chrX 3529882 . G . . END=3530338 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,103,1348 +chrX 3530339 . G A, 612.64 . AS_QUALapprox=|620|0;AS_VarDP=25|23|0;BaseQRankSum=0.331;DP=48;MQRankSum=0.000;QUALapprox=620;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=0.547;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:25,23,0:48:99:620,0,695,696,764,1459:11,14,10,13 +chrX 3530340 . T . . END=3530887 GT:DP:GQ:MIN_DP:PL 0/0:49:74:49:0,74,948 +chrX 3530888 . T C, 612.64 . AS_QUALapprox=|620|0;AS_VarDP=27|23|0;BaseQRankSum=1.177;DP=55;MQRankSum=0.000;QUALapprox=620;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=0.058;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:27,23,0:50:99:620,0,703,700,773,1473:17,10,14,9 +chrX 3530889 . G . . END=3531487 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,104,1420 +chrX 3531488 . A G, 560.64 . AS_QUALapprox=|568|0;AS_VarDP=26|23|0;BaseQRankSum=-0.343;DP=51;MQRankSum=0.000;QUALapprox=568;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-0.571;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:26,23,0:49:99:568,0,703,646,771,1417:12,14,13,10 +chrX 3531489 . T . . END=3531531 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,116,1514 +chrX 3531532 . G T, 462.64 . AS_QUALapprox=|470|0;AS_VarDP=33|18|0;BaseQRankSum=1.330;DP=53;MQRankSum=0.000;QUALapprox=470;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=1.410;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:33,18,0:51:99:470,0,960,570,1014,1583:20,13,5,13 +chrX 3531533 . T . . END=3532108 GT:DP:GQ:MIN_DP:PL 0/0:61:77:61:0,77,1375 +chrX 3532109 . T TA, 654.60 . AS_QUALapprox=|662|0;AS_VarDP=21|29|0;BaseQRankSum=0.177;DP=58;MQRankSum=0.000;QUALapprox=662;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-0.433;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:21,29,0:50:99:662,0,442,725,529,1254:14,7,19,10 +chrX 3532110 . A . . END=3532525 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,103,1469 +chrX 3532526 . T C, 670.64 . AS_QUALapprox=|678|0;AS_VarDP=27|25|0;BaseQRankSum=0.711;DP=53;MQRankSum=0.000;QUALapprox=678;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=0.953;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:27,25,0:52:99:678,0,743,759,817,1576:16,11,17,8 +chrX 3532527 . T . . END=3533228 GT:DP:GQ:MIN_DP:PL 0/0:51:79:51:0,79,1031 +chrX 3533229 . T C, 689.64 . AS_QUALapprox=|697|0;AS_VarDP=17|27|0;BaseQRankSum=-0.543;DP=46;MQRankSum=0.000;QUALapprox=697;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=-0.096;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:17,27,0:44:99:697,0,419,748,500,1247:9,8,12,15 +chrX 3533230 . G . . END=3534230 GT:DP:GQ:MIN_DP:PL 0/0:48:72:48:0,72,1065 +chrX 3534231 . G A, 552.64 . AS_QUALapprox=|560|0;AS_VarDP=25|20|0;BaseQRankSum=2.346;DP=45;MQRankSum=0.000;QUALapprox=560;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=-0.263;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:25,20,0:45:99:560,0,674,635,734,1369:7,18,10,10 +chrX 3534232 . T . . END=3535273 GT:DP:GQ:MIN_DP:PL 0/0:58:80:58:0,80,1291 +chrX 3535274 . C T, 1022.64 . AS_QUALapprox=|1030|0;AS_VarDP=19|36|0;BaseQRankSum=1.197;DP=59;MQRankSum=0.000;QUALapprox=1030;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-0.531;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:19,36,0:55:99:1030,0,426,1087,534,1621:11,8,18,18 +chrX 3535275 . G . . END=3535642 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,99,1275 +chrX 3535643 . G T, 626.64 . AS_QUALapprox=|634|0;AS_VarDP=23|24|0;BaseQRankSum=-0.433;DP=50;MQRankSum=0.000;QUALapprox=634;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=1.980;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:23,24,0:47:99:634,0,589,702,661,1363:13,10,16,8 +chrX 3535644 . G . . END=3536214 GT:DP:GQ:MIN_DP:PL 0/0:61:49:61:0,49,1206 +chrX 3536215 . TTGTG T,TTG, 1317.02 . AS_QUALapprox=|960|890|0;AS_VarDP=0|17|15|0;DP=49;QUALapprox=1334;RAW_GT_COUNT=0,0,1;RAW_MQandDP=175104,49;VarDP=32 GT:AD:DP:GQ:PL:SB 1/2:0,17,15,0:32:99:1334,467,374,538,0,444,1193,457,526,1125:0,0,12,20 +chrX 3536220 . T . . END=3536250 GT:DP:GQ:MIN_DP:PL 0/0:39:87:39:0,87,1052 +chrX 3536251 . G C, 1552.06 . AS_QUALapprox=|1566|0;AS_VarDP=0|36|0;DP=36;QUALapprox=1566;RAW_GT_COUNT=0,0,1;RAW_MQandDP=128304,36;VarDP=36 GT:AD:DP:GQ:PL:SB 1/1:0,36,0:36:99:1566,108,0,1566,108,1566:0,0,15,21 +chrX 3536252 . T . . END=3536812 GT:DP:GQ:MIN_DP:PL 0/0:57:59:57:0,59,1002 +chrX 3536813 . TTTTA T, 522.60 . AS_QUALapprox=|530|0;AS_VarDP=22|17|0;BaseQRankSum=0.856;DP=51;MQRankSum=0.000;QUALapprox=530;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-1.880;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:22,17,0:39:99:530,0,873,596,924,1520:18,4,12,5 +chrX 3536818 . T . . END=3536844 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,117,1755 +chrX 3536845 . A . . END=3536845 GT:DP:GQ:MIN_DP:PL 0/0:61:0:61:0,0,1503 +chrX 3536846 . T . . END=3538042 GT:DP:GQ:MIN_DP:PL 0/0:57:91:57:0,91,1261 +chrX 3538043 . C CA, 630.60 . AS_QUALapprox=|638|0;AS_VarDP=20|31|0;BaseQRankSum=-0.525;DP=64;MQRankSum=0.000;QUALapprox=638;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=-0.569;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:20,31,0:51:99:638,0,376,698,469,1166:9,11,13,18 +chrX 3538044 . A . . END=3538070 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 3538071 . C A, 591.64 . AS_QUALapprox=|599|0;AS_VarDP=25|22|0;BaseQRankSum=-0.110;DP=49;MQRankSum=0.000;QUALapprox=599;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=-1.227;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:25,22,0:47:99:599,0,707,674,773,1447:11,14,12,10 +chrX 3538072 . A . . END=3538664 GT:DP:GQ:MIN_DP:PL 0/0:51:39:41:0,39,1090 +chrX 3538665 . TGATA T,TGATAGATA, 1356.02 . AS_QUALapprox=|534|898|0;AS_VarDP=0|13|20|0;DP=52;QUALapprox=1373;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=33 GT:AD:DP:GQ:PL:SB 1/2:0,13,20,0:33:99:1373,839,931,534,0,475,1385,911,546,1446:0,0,13,20 +chrX 3538670 . G . . END=3539018 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,102,1259 +chrX 3539019 . C T, 678.64 . AS_QUALapprox=|686|0;AS_VarDP=30|26|0;BaseQRankSum=2.333;DP=59;MQRankSum=0.000;QUALapprox=686;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-0.296;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:30,26,0:56:99:686,0,750,776,827,1603:19,11,11,15 +chrX 3539020 . A . . END=3540306 GT:DP:GQ:MIN_DP:PL 0/0:40:33:39:0,33,1072 +chrX 3540307 . G A, 681.64 . AS_QUALapprox=|689|0;AS_VarDP=21|27|0;BaseQRankSum=-1.935;DP=48;MQRankSum=0.000;QUALapprox=689;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=-2.110;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:21,27,0:48:99:689,0,566,752,647,1399:13,8,14,13 +chrX 3540308 . C . . END=3540421 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 3540422 . A G, 739.64 . AS_QUALapprox=|747|0;AS_VarDP=33|29|0;BaseQRankSum=-1.305;DP=64;MQRankSum=0.000;QUALapprox=747;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=-1.376;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:33,29,0:62:99:747,0,931,846,1018,1864:17,16,18,11 +chrX 3540423 . A . . END=3540767 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 3540768 . T C, 1316.64 . AS_QUALapprox=|1324|0;AS_VarDP=17|34|0;BaseQRankSum=-1.975;DP=53;MQRankSum=-1.225;QUALapprox=1324;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190098,53;ReadPosRankSum=0.360;VarDP=51 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:17,34,0:51:99:0|1:3540768_T_C:1324,0,601,1375,704,2078:3540768:8,9,19,15 +chrX 3540769 . T . . END=3540775 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,120,1800 +chrX 3540776 . G A, 1232.64 . AS_QUALapprox=|1240|0;AS_VarDP=17|31|0;BaseQRankSum=-1.660;DP=48;MQRankSum=-1.285;QUALapprox=1240;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172098,48;ReadPosRankSum=0.607;VarDP=48 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:17,31,0:48:99:0|1:3540768_T_C:1240,0,610,1291,704,1994:3540768:8,9,19,12 +chrX 3540777 . G . . END=3541179 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,100,1349 +chrX 3541180 . C T, 543.64 . AS_QUALapprox=|551|0;AS_VarDP=22|21|0;BaseQRankSum=-1.273;DP=46;MQRankSum=0.000;QUALapprox=551;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=0.097;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:22,21,0:43:99:551,0,614,617,677,1294:11,11,10,11 +chrX 3541181 . C . . END=3541292 GT:DP:GQ:MIN_DP:PL 0/0:50:92:50:0,92,1455 +chrX 3541293 . T C, 685.64 . AS_QUALapprox=|693|0;AS_VarDP=27|25|0;BaseQRankSum=0.778;DP=53;MQRankSum=0.000;QUALapprox=693;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=0.669;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:27,25,0:52:99:693,0,742,774,817,1591:10,17,10,15 +chrX 3541294 . T . . END=3541759 GT:DP:GQ:MIN_DP:PL 0/0:52:96:52:0,96,1234 +chrX 3541760 . C T, 972.64 . AS_QUALapprox=|980|0;AS_VarDP=15|34|0;BaseQRankSum=0.715;DP=52;MQRankSum=0.000;QUALapprox=980;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=-1.606;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:15,34,0:49:99:980,0,344,1025,446,1471:9,6,20,14 +chrX 3541761 . C . . END=3542047 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 3542048 . C G, 774.64 . AS_QUALapprox=|782|0;AS_VarDP=33|29|0;BaseQRankSum=-0.514;DP=68;MQRankSum=0.000;QUALapprox=782;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=-1.235;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:33,29,0:62:99:782,0,916,881,1003,1884:17,16,15,14 +chrX 3542049 . A . . END=3542202 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 3542203 . C T, 735.64 . AS_QUALapprox=|743|0;AS_VarDP=24|26|0;BaseQRankSum=1.156;DP=51;MQRankSum=0.000;QUALapprox=743;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=0.282;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:24,26,0:50:99:743,0,639,815,717,1532:12,12,12,14 +chrX 3542204 . C . . END=3542603 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,100,1336 +chrX 3542604 . T A, 1639.06 . AS_QUALapprox=|1653|0;AS_VarDP=0|50|0;DP=50;QUALapprox=1653;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1653,150,0,1653,150,1653:0,0,31,19 +chrX 3542605 . G . . END=3543000 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 3543001 . C T, 591.64 . AS_QUALapprox=|599|0;AS_VarDP=33|22|0;BaseQRankSum=2.836;DP=57;MQRankSum=0.306;QUALapprox=599;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201729,57;ReadPosRankSum=-0.284;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:33,22,0:55:99:599,0,859,698,925,1623:17,16,9,13 +chrX 3543002 . G . . END=3543197 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,107,1280 +chrX 3543198 . T C, 2215.06 . AS_QUALapprox=|2229|0;AS_VarDP=0|50|0;DP=53;QUALapprox=2229;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,50,0:50:99:0|1:3543198_T_C:2229,150,0,2229,150,2229:3543198:0,0,24,26 +chrX 3543199 . G . . END=3543199 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 3543200 . A G, 2215.06 . AS_QUALapprox=|2229|0;AS_VarDP=0|50|0;DP=50;QUALapprox=2229;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,50,0:50:99:0|1:3543198_T_C:2229,150,0,2229,150,2229:3543198:0,0,24,26 +chrX 3543201 . C . . END=3543377 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,104,1618 +chrX 3543378 . T TA,TAA, 1209.02 . AS_QUALapprox=|948|601|0;AS_VarDP=0|29|16|0;DP=55;QUALapprox=1226;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=45 GT:AD:DP:GQ:PL:SB 1/2:0,29,16,0:45:99:1226,412,278,681,0,625,1166,398,678,1132:0,0,22,23 +chrX 3543379 . A . . END=3543823 GT:DP:GQ:MIN_DP:PL 0/0:55:69:55:0,69,1035 +chrX 3543824 . CTCTCTATA C,CTA, 321.60 . AS_QUALapprox=|0|329|0;AS_VarDP=14|0|12|0;BaseQRankSum=1.244;DP=44;MQRankSum=0.000;QUALapprox=329;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154402,44;ReadPosRankSum=2.188;VarDP=26 GT:AD:DP:GQ:PL:SB 0/2:14,0,12,0:26:99:329,400,1230,0,574,508,398,1102,573,1073:7,7,5,7 +chrX 3543828 . CTATA *,C,CTA, 208.01 . AS_QUALapprox=|0|0|355|0;AS_VarDP=1|12|0|7|0;BaseQRankSum=1.534;DP=42;MQRankSum=0.000;QUALapprox=746;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147202,42;ReadPosRankSum=-0.174;VarDP=20 GT:AD:DP:GQ:PL:SB 1/3:1,12,0,7,0:20:99:746,218,466,797,267,1208,391,0,763,731,797,264,1177,765,1174:0,1,8,11 +chrX 3543833 . T . . END=3543891 GT:DP:GQ:MIN_DP:PL 0/0:41:81:41:0,81,1215 +chrX 3543892 . C T, 822.64 . AS_QUALapprox=|830|0;AS_VarDP=27|29|0;BaseQRankSum=1.661;DP=56;MQRankSum=0.000;QUALapprox=830;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-1.050;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:27,29,0:56:99:830,0,695,910,783,1693:10,17,16,13 +chrX 3543893 . A . . END=3543969 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 3543970 . T C, 2049.06 . AS_QUALapprox=|2063|0;AS_VarDP=0|63|0;DP=65;QUALapprox=2063;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=63 GT:AD:DP:GQ:PL:SB 1/1:0,63,0:63:99:2063,188,0,2063,188,2063:0,0,36,27 +chrX 3543971 . G . . END=3544002 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 3544003 . G A, 2258.06 . AS_QUALapprox=|2272|0;AS_VarDP=1|70|0;BaseQRankSum=2.109;DP=74;MQRankSum=0.000;QUALapprox=2272;RAW_GT_COUNT=0,0,1;RAW_MQandDP=264400,74;ReadPosRankSum=0.000;VarDP=71 GT:AD:DP:GQ:PL:SB 1/1:1,70,0:71:99:2272,188,0,2275,210,2296:1,0,39,31 +chrX 3544004 . T . . END=3544072 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 3544073 . G T, 1871.06 . AS_QUALapprox=|1885|0;AS_VarDP=2|60|0;BaseQRankSum=1.256;DP=63;MQRankSum=-0.091;QUALapprox=1885;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226116,63;ReadPosRankSum=-0.299;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:2,60,0:62:99:1885,141,0,1890,180,1929:1,1,35,25 +chrX 3544074 . C . . END=3544331 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 3544332 . G A, 774.64 . AS_QUALapprox=|782|0;AS_VarDP=37|30|0;BaseQRankSum=-0.969;DP=68;MQRankSum=0.000;QUALapprox=782;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=2.384;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:37,30,0:67:99:782,0,1030,893,1120,2013:14,23,20,10 +chrX 3544333 . G . . END=3545054 GT:DP:GQ:MIN_DP:PL 0/0:62:95:62:0,95,1200 +chrX 3545055 . C . . END=3545056 GT:DP:GQ:MIN_DP:PL 0/0:65:4:65:0,4,2354 +chrX 3545057 . A . . END=3545060 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 3545061 . C T, 0.21 . AS_QUALapprox=|5|0;AS_VarDP=54|4|0;BaseQRankSum=0.914;DP=58;MQRankSum=-5.193;QUALapprox=5;RAW_GT_COUNT=0,1,0;RAW_MQandDP=203825,58;ReadPosRankSum=-1.313;VarDP=58 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:54,4,0:58:5:0|1:3545055_C_T:5,0,2255,168,2267,2435:3545055:23,31,0,4 +chrX 3545062 . C . . END=3545062 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 3545063 . T C, 1.22 . AS_QUALapprox=|8|0;AS_VarDP=53|4|0;BaseQRankSum=0.606;DP=57;MQRankSum=-5.145;QUALapprox=8;RAW_GT_COUNT=0,1,0;RAW_MQandDP=200225,57;ReadPosRankSum=-1.528;VarDP=57 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:53,4,0:57:8:0|1:3545055_C_T:8,0,2213,168,2225,2393:3545055:22,31,0,4 +chrX 3545064 . G . . END=3545066 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 3545067 . T TGA, 6.56 . AS_QUALapprox=|14|0;AS_VarDP=51|4|0;BaseQRankSum=0.621;DP=55;MQRankSum=-5.046;QUALapprox=14;RAW_GT_COUNT=0,1,0;RAW_MQandDP=193025,55;ReadPosRankSum=-1.462;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:51,4,0:55:14:0|1:3545055_C_T:14,0,2129,168,2141,2309:3545055:20,31,0,4 +chrX 3545068 . A . . END=3545147 GT:DP:GQ:MIN_DP:PL 0/0:57:37:55:0,37,1800 +chrX 3545148 . C G, 1837.06 . AS_QUALapprox=|1851|0;AS_VarDP=0|57|0;DP=57;QUALapprox=1851;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1851,170,0,1851,170,1851:0,0,36,21 +chrX 3545149 . A . . END=3545199 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 3545200 . C T, 1957.06 . AS_QUALapprox=|1971|0;AS_VarDP=0|59|0;DP=60;QUALapprox=1971;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1971,177,0,1971,177,1971:0,0,34,25 +chrX 3545201 . A . . END=3545489 GT:DP:GQ:MIN_DP:PL 0/0:57:59:57:0,59,1260 +chrX 3545490 . G A, 2096.06 . AS_QUALapprox=|2110|0;AS_VarDP=0|63|0;DP=65;QUALapprox=2110;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=63 GT:AD:DP:GQ:PL:SB 1/1:0,63,0:63:99:2110,189,0,2110,189,2110:0,0,43,20 +chrX 3545491 . T . . END=3546032 GT:DP:GQ:MIN_DP:PL 0/0:64:98:64:0,98,1678 +chrX 3546033 . G A, 2139.06 . AS_QUALapprox=|2153|0;AS_VarDP=0|66|0;DP=67;QUALapprox=2153;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=66 GT:AD:DP:GQ:PL:SB 1/1:0,66,0:66:99:2153,198,0,2153,198,2153:0,0,32,34 +chrX 3546034 . C . . END=3546318 GT:DP:GQ:MIN_DP:PL 0/0:74:99:74:0,120,1800 +chrX 3546319 . A G, 1833.06 . AS_QUALapprox=|1847|0;AS_VarDP=0|59|0;DP=64;QUALapprox=1847;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1847,176,0,1847,176,1847:0,0,26,33 +chrX 3546320 . G . . END=3546823 GT:DP:GQ:MIN_DP:PL 0/0:62:68:62:0,68,1308 +chrX 3546824 . A G, 1285.06 . AS_QUALapprox=|1299|0;AS_VarDP=0|39|0;DP=41;QUALapprox=1299;RAW_GT_COUNT=0,0,1;RAW_MQandDP=142142,41;VarDP=39 GT:AD:DP:GQ:PL:SB 1/1:0,39,0:39:99:1299,117,0,1299,117,1299:0,0,26,13 +chrX 3546825 . A . . END=3546863 GT:DP:GQ:MIN_DP:PL 0/0:38:75:38:0,75,1125 +chrX 3546864 . G . . END=3546883 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,536 +chrX 3546884 . G . . END=3546886 GT:DP:GQ:MIN_DP:PL 0/0:37:73:37:0,73,1121 +chrX 3546887 . A . . END=3546887 GT:DP:GQ:MIN_DP:PL 0/0:39:7:39:0,7,839 +chrX 3546888 . G . . END=3546893 GT:DP:GQ:MIN_DP:PL 0/0:39:36:36:0,36,1048 +chrX 3546894 . AAGGAAGGAAGGAAAAGAGGGAGGCAGGGAGGGAGGGAAGGAAGGAAGGAAGGAAGGT A, 75.60 . AS_QUALapprox=|83|0;AS_VarDP=35|6|0;BaseQRankSum=0.159;DP=60;MQRankSum=-1.401;QUALapprox=83;RAW_GT_COUNT=0,1,0;RAW_MQandDP=197639,60;ReadPosRankSum=1.156;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:35,6,0:41:83:83,0,1340,252,1299,1795:15,8,5,1 +chrX 3546902 . A *,AAGGAAGGT,AAGGT,AAAAGAGGGAGGCAGGGAGGGAGGGAAGGAAGGAAGGAAGGAAGGT,AAGGAAAAGAGGGAGGCAGGGAGGGAGGGAAGGAAGGAAGGAAGGAAGGT, 446.01 . AS_QUALapprox=|0|473|320|349|341|0;AS_VarDP=1|21|2|0|0|0|0;BaseQRankSum=0.431;DP=48;MQRankSum=1.205;QUALapprox=1145;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154439,48;ReadPosRankSum=-0.434;VarDP=24 GT:AD:DP:GQ:PL:SB 1/2:1,21,2,0,0,0,0:24:99:1145,456,633,672,0,825,825,300,856,1207,796,300,696,1042,1205,804,301,735,1081,1215,1254,998,482,756,1107,1080,1119,1261:0,1,13,10 +chrX 3546952 . A . . END=3546955 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,0 +chrX 3546956 . A . . END=3546960 GT:DP:GQ:MIN_DP:PL 0/0:45:51:45:0,51,1295 +chrX 3546961 . A . . END=3546961 GT:DP:GQ:MIN_DP:PL 0/0:46:19:46:0,19,1261 +chrX 3546962 . A . . END=3546968 GT:DP:GQ:MIN_DP:PL 0/0:49:43:49:0,43,1266 +chrX 3546969 . T . . END=3546969 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,901 +chrX 3546970 . G . . END=3546970 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 3546971 . C . . END=3546971 GT:DP:GQ:MIN_DP:PL 0/0:49:5:49:0,5,1187 +chrX 3546972 . A . . END=3547907 GT:DP:GQ:MIN_DP:PL 0/0:57:33:52:0,33,1267 +chrX 3547908 . A T, 841.64 . AS_QUALapprox=|849|0;AS_VarDP=25|31|0;BaseQRankSum=0.429;DP=57;MQRankSum=0.000;QUALapprox=849;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-0.643;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:25,31,0:56:99:849,0,641,924,734,1658:16,9,16,15 +chrX 3547909 . A . . END=3548011 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,116,1673 +chrX 3548012 . A G, 877.64 . AS_QUALapprox=|885|0;AS_VarDP=31|36|0;BaseQRankSum=-1.407;DP=67;MQRankSum=0.772;QUALapprox=885;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237762,67;ReadPosRankSum=-0.151;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:31,36,0:67:99:885,0,818,979,924,1903:20,11,21,15 +chrX 3548013 . G . . END=3548191 GT:DP:GQ:MIN_DP:PL 0/0:51:37:45:0,37,1277 +chrX 3548192 . C T, 583.64 . AS_QUALapprox=|591|0;AS_VarDP=33|22|0;BaseQRankSum=2.904;DP=58;MQRankSum=0.000;QUALapprox=591;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-0.103;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:33,22,0:55:99:591,0,807,689,873,1562:12,21,10,12 +chrX 3548193 . G . . END=3548483 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 3548484 . T C, 984.64 . AS_QUALapprox=|992|0;AS_VarDP=33|40|0;BaseQRankSum=-2.644;DP=77;MQRankSum=0.000;QUALapprox=992;RAW_GT_COUNT=0,1,0;RAW_MQandDP=277200,77;ReadPosRankSum=0.170;VarDP=73 GT:AD:DP:GQ:PL:SB 0/1:33,40,0:73:99:992,0,868,1090,987,2078:14,19,21,19 +chrX 3548485 . C . . END=3549221 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1643 +chrX 3549222 . A G, 1745.06 . AS_QUALapprox=|1759|0;AS_VarDP=1|55|0;BaseQRankSum=-0.419;DP=57;MQRankSum=0.000;QUALapprox=1759;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;ReadPosRankSum=-0.402;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:1,55,0:56:99:1759,133,0,1762,165,1793:1,0,30,25 +chrX 3549223 . A . . END=3549342 GT:DP:GQ:MIN_DP:PL 0/0:51:91:51:0,91,1409 +chrX 3549343 . G . . END=3549343 GT:DP:GQ:MIN_DP:PL 0/0:52:0:52:0,0,1249 +chrX 3549344 . T . . END=3549345 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,108,1626 +chrX 3549346 . G . . END=3549349 GT:DP:GQ:MIN_DP:PL 0/0:61:0:61:0,0,1059 +chrX 3549350 . T . . END=3549350 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 3549351 . T . . END=3549352 GT:DP:GQ:MIN_DP:PL 0/0:65:0:65:0,0,962 +chrX 3549353 . C . . END=3549354 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 3549355 . T TTCTCTCTC,TTCTCTCTCTC, 2127.02 . AS_QUALapprox=|1746|1668|0;AS_VarDP=1|21|19|0;BaseQRankSum=-0.825;DP=65;MQRankSum=0.000;QUALapprox=2144;RAW_GT_COUNT=0,0,1;RAW_MQandDP=233649,65;ReadPosRankSum=-1.396;VarDP=41 GT:AD:DP:GQ:PL:SB 1/2:1,21,19,0:41:99:2144,510,398,587,0,476,1682,543,619,1592:0,1,15,25 +chrX 3549356 . T . . END=3549383 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 3549384 . G . . END=3549384 GT:DP:GQ:MIN_DP:PL 0/0:60:16:60:0,16,1526 +chrX 3549385 . T . . END=3549580 GT:DP:GQ:MIN_DP:PL 0/0:48:60:48:0,60,988 +chrX 3549581 . G T, 555.64 . AS_QUALapprox=|563|0;AS_VarDP=17|20|0;BaseQRankSum=1.167;DP=38;MQRankSum=0.000;QUALapprox=563;RAW_GT_COUNT=0,1,0;RAW_MQandDP=136800,38;ReadPosRankSum=0.122;VarDP=37 GT:AD:DP:GQ:PL:SB 0/1:17,20,0:37:99:563,0,425,614,485,1099:10,7,12,8 +chrX 3549582 . T . . END=3550113 GT:DP:GQ:MIN_DP:PL 0/0:63:89:63:0,89,1128 +chrX 3550114 . G A, 2204.06 . AS_QUALapprox=|2218|0;AS_VarDP=0|69|0;DP=70;QUALapprox=2218;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;VarDP=69 GT:AD:DP:GQ:PL:SB 1/1:0,69,0:69:99:2218,207,0,2218,207,2218:0,0,33,36 +chrX 3550115 . G . . END=3550834 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,113,1648 +chrX 3550835 . G A, 572.64 . AS_QUALapprox=|580|0;AS_VarDP=29|21|0;BaseQRankSum=2.004;DP=52;MQRankSum=0.000;QUALapprox=580;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=1.131;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:29,21,0:50:99:580,0,806,667,869,1536:15,14,6,15 +chrX 3550836 . T . . END=3550995 GT:DP:GQ:MIN_DP:PL 0/0:48:76:48:0,76,1210 +chrX 3550996 . G A, 410.64 . AS_QUALapprox=|418|0;AS_VarDP=24|17|0;BaseQRankSum=-0.846;DP=43;MQRankSum=0.000;QUALapprox=418;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154800,43;ReadPosRankSum=-0.569;VarDP=41 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,17,0:41:99:0|1:3550996_G_A:418,0,656,490,707,1197:3550996:12,12,12,5 +chrX 3550997 . T . . END=3551001 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,108,1620 +chrX 3551002 . A G, 1450.06 . AS_QUALapprox=|1464|0;AS_VarDP=0|39|0;DP=40;QUALapprox=1464;RAW_GT_COUNT=0,0,1;RAW_MQandDP=144000,40;VarDP=39 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,39,0:39:99:0|1:3550996_G_A:1464,117,0,1464,117,1464:3550996:0,0,22,17 +chrX 3551003 . T . . END=3551668 GT:DP:GQ:MIN_DP:PL 0/0:61:88:61:0,88,1234 +chrX 3551669 . G A, 1380.06 . AS_QUALapprox=|1394|0;AS_VarDP=0|41|0;DP=44;QUALapprox=1394;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158400,44;VarDP=41 GT:AD:DP:GQ:PL:SB 1/1:0,41,0:41:99:1394,123,0,1394,123,1394:0,0,28,13 +chrX 3551670 . A . . END=3553629 GT:DP:GQ:MIN_DP:PL 0/0:61:65:61:0,65,1200 +chrX 3553630 . A G, 1564.06 . AS_QUALapprox=|1578|0;AS_VarDP=0|48|0;DP=48;QUALapprox=1578;RAW_GT_COUNT=0,0,1;RAW_MQandDP=148059,48;VarDP=48 GT:AD:DP:GQ:PL:SB 1/1:0,48,0:48:99:1578,144,0,1578,144,1578:0,0,24,24 +chrX 3553631 . G . . END=3553719 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 3553720 . A G, 1683.06 . AS_QUALapprox=|1697|0;AS_VarDP=0|51|0;DP=51;QUALapprox=1697;RAW_GT_COUNT=0,0,1;RAW_MQandDP=141118,51;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1697,153,0,1697,153,1697:0,0,19,32 +chrX 3553721 . G . . END=3554234 GT:DP:GQ:MIN_DP:PL 0/0:51:72:51:0,72,1321 +chrX 3554235 . G A, 752.64 . AS_QUALapprox=|760|0;AS_VarDP=31|30|0;BaseQRankSum=0.527;DP=63;MQRankSum=-0.984;QUALapprox=760;RAW_GT_COUNT=0,1,0;RAW_MQandDP=225650,63;ReadPosRankSum=-0.931;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:31,30,0:61:99:760,0,800,852,890,1742:13,18,14,16 +chrX 3554236 . T . . END=3554876 GT:DP:GQ:MIN_DP:PL 0/0:56:87:56:0,87,1359 +chrX 3554877 . G A, 437.64 . AS_QUALapprox=|445|0;AS_VarDP=40|18|0;BaseQRankSum=2.324;DP=59;MQRankSum=1.551;QUALapprox=445;RAW_GT_COUNT=0,1,0;RAW_MQandDP=79273,59;ReadPosRankSum=1.101;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:40,18,0:58:99:445,0,1070,566,1124,1690:23,17,10,8 +chrX 3554878 . C . . END=3555215 GT:DP:GQ:MIN_DP:PL 0/0:63:68:63:0,68,1692 +chrX 3555216 . T C, 561.64 . AS_QUALapprox=|569|0;AS_VarDP=34|16|0;BaseQRankSum=-0.118;DP=51;MQRankSum=-6.421;QUALapprox=569;RAW_GT_COUNT=0,1,0;RAW_MQandDP=149637,51;ReadPosRankSum=1.290;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:34,16,0:50:99:0|1:3555216_T_C:569,0,1348,672,1396,2068:3555216:14,20,5,11 +chrX 3555217 . G . . END=3555222 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 3555223 . G C, 565.64 . AS_QUALapprox=|573|0;AS_VarDP=33|16|0;BaseQRankSum=1.356;DP=50;MQRankSum=-6.346;QUALapprox=573;RAW_GT_COUNT=0,1,0;RAW_MQandDP=143526,50;ReadPosRankSum=0.678;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:33,16,0:49:99:0|1:3555216_T_C:573,0,1317,672,1365,2037:3555216:14,19,5,11 +chrX 3555224 . G . . END=3555282 GT:DP:GQ:MIN_DP:PL 0/0:41:93:41:0,93,1216 +chrX 3555283 . G C, 1834.06 . AS_QUALapprox=|1848|0;AS_VarDP=0|43|0;DP=43;QUALapprox=1848;RAW_GT_COUNT=0,0,1;RAW_MQandDP=95757,43;VarDP=43 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,43,0:43:99:0|1:3555283_G_C:1848,129,0,1848,129,1848:3555283:0,0,16,27 +chrX 3555284 . G . . END=3555287 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,105,1575 +chrX 3555288 . C T, 1800.06 . AS_QUALapprox=|1814|0;AS_VarDP=0|41|0;DP=42;QUALapprox=1814;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90157,42;VarDP=41 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,41,0:41:99:0|1:3555283_G_C:1814,123,0,1814,123,1814:3555283:0,0,14,27 +chrX 3555289 . A . . END=3555320 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,99,1246 +chrX 3555321 . G A, 1381.06 . AS_QUALapprox=|1395|0;AS_VarDP=0|42|0;DP=42;QUALapprox=1395;RAW_GT_COUNT=0,0,1;RAW_MQandDP=79420,42;VarDP=42 GT:AD:DP:GQ:PL:SB 1/1:0,42,0:42:99:1395,126,0,1395,126,1395:0,0,16,26 +chrX 3555322 . C . . END=3555433 GT:DP:GQ:MIN_DP:PL 0/0:40:66:40:0,66,990 +chrX 3555434 . C . . END=3555434 GT:DP:GQ:MIN_DP:PL 0/0:29:18:29:0,18,839 +chrX 3555435 . T . . END=3555471 GT:DP:GQ:MIN_DP:PL 0/0:26:33:25:0,33,734 +chrX 3555472 . C T, 599.64 . AS_QUALapprox=|607|0;AS_VarDP=6|20|0;BaseQRankSum=-0.456;DP=28;MQRankSum=3.666;QUALapprox=607;RAW_GT_COUNT=0,1,0;RAW_MQandDP=57857,28;ReadPosRankSum=2.955;VarDP=26 GT:AD:DP:GQ:PL:SB 0/1:6,20,0:26:99:607,0,112,625,173,798:2,4,9,11 +chrX 3555473 . T . . END=3555487 GT:DP:GQ:MIN_DP:PL 0/0:27:72:27:0,72,814 +chrX 3555488 . C T, 304.64 . AS_QUALapprox=|312|0;AS_VarDP=22|9|0;BaseQRankSum=1.909;DP=31;MQRankSum=-3.545;QUALapprox=312;RAW_GT_COUNT=0,1,0;RAW_MQandDP=64354,31;ReadPosRankSum=-2.374;VarDP=31 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,9,0:31:99:0|1:3555488_C_T:312,0,840,378,867,1245:3555488:11,11,5,4 +chrX 3555489 . G . . END=3555489 GT:DP:GQ:MIN_DP:PL 0/0:29:87:29:0,87,938 +chrX 3555490 . T A, 304.64 . AS_QUALapprox=|312|0;AS_VarDP=22|9|0;BaseQRankSum=1.382;DP=31;MQRankSum=-3.545;QUALapprox=312;RAW_GT_COUNT=0,1,0;RAW_MQandDP=64354,31;ReadPosRankSum=-2.156;VarDP=31 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,9,0:31:99:0|1:3555488_C_T:312,0,840,378,867,1245:3555488:11,11,5,4 +chrX 3555491 . C . . END=3555598 GT:DP:GQ:MIN_DP:PL 0/0:43:88:43:0,88,1077 +chrX 3555599 . T C, 626.64 . AS_QUALapprox=|634|0;AS_VarDP=20|24|0;BaseQRankSum=0.472;DP=47;MQRankSum=4.509;QUALapprox=634;RAW_GT_COUNT=0,1,0;RAW_MQandDP=96770,47;ReadPosRankSum=2.229;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:20,24,0:44:99:634,0,460,694,532,1226:14,6,13,11 +chrX 3555600 . A . . END=3555641 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,111,1331 +chrX 3555642 . T A, 421.64 . AS_QUALapprox=|429|0;AS_VarDP=24|18|0;BaseQRankSum=1.361;DP=42;MQRankSum=-5.455;QUALapprox=429;RAW_GT_COUNT=0,1,0;RAW_MQandDP=100953,42;ReadPosRankSum=0.598;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:24,18,0:42:99:429,0,560,499,613,1112:14,10,16,2 +chrX 3555643 . G . . END=3555972 GT:DP:GQ:MIN_DP:PL 0/0:59:66:59:0,66,1283 +chrX 3555973 . G C, 846.64 . AS_QUALapprox=|854|0;AS_VarDP=28|33|0;BaseQRankSum=0.519;DP=64;MQRankSum=-3.035;QUALapprox=854;RAW_GT_COUNT=0,1,0;RAW_MQandDP=195027,64;ReadPosRankSum=-2.237;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:28,33,0:61:99:854,0,701,1009,862,2195:16,12,21,12 +chrX 3555974 . T . . END=3556050 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,111,1776 +chrX 3556051 . G C, 818.64 . AS_QUALapprox=|826|0;AS_VarDP=34|30|0;BaseQRankSum=2.491;DP=67;MQRankSum=-6.630;QUALapprox=826;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183964,67;ReadPosRankSum=1.311;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:34,30,0:64:99:826,0,885,927,974,1902:16,18,16,14 +chrX 3556052 . T . . END=3556055 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 3556056 . A G, 2532.06 . AS_QUALapprox=|2546|0;AS_VarDP=0|67|0;DP=67;QUALapprox=2546;RAW_GT_COUNT=0,0,1;RAW_MQandDP=185764,67;VarDP=67 GT:AD:DP:GQ:PL:SB 1/1:0,67,0:67:99:2546,201,0,2546,201,2546:0,0,34,33 +chrX 3556057 . T . . END=3556063 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 3556064 . A G, 904.64 . AS_QUALapprox=|912|0;AS_VarDP=35|32|0;BaseQRankSum=2.661;DP=68;MQRankSum=-7.089;QUALapprox=912;RAW_GT_COUNT=0,1,0;RAW_MQandDP=189364,68;ReadPosRankSum=-0.239;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:35,32,0:67:99:912,0,890,1016,986,2001:15,20,18,14 +chrX 3556065 . T . . END=3556167 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 3556168 . T A, 2214.06 . AS_QUALapprox=|2228|0;AS_VarDP=1|69|0;BaseQRankSum=-0.392;DP=71;MQRankSum=2.192;QUALapprox=2228;RAW_GT_COUNT=0,0,1;RAW_MQandDP=229251,71;ReadPosRankSum=-1.658;VarDP=70 GT:AD:DP:GQ:PL:SB 1/1:1,69,0:70:99:2228,175,0,2231,207,2263:0,1,30,39 +chrX 3556169 . T . . END=3556180 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 3556181 . G T, 722.64 . AS_QUALapprox=|730|0;AS_VarDP=37|30|0;BaseQRankSum=-0.703;DP=69;MQRankSum=-4.295;QUALapprox=730;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226547,69;ReadPosRankSum=-0.132;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:37,30,0:67:99:730,0,984,841,1073,1914:14,23,12,18 +chrX 3556182 . G . . END=3556271 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 3556272 . T C, 878.64 . AS_QUALapprox=|886|0;AS_VarDP=27|33|0;BaseQRankSum=-0.172;DP=62;MQRankSum=-2.704;QUALapprox=886;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216489,62;ReadPosRankSum=-1.583;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:27,33,0:60:99:886,0,698,968,797,1764:11,16,16,17 +chrX 3556273 . G . . END=3556468 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,101,1499 +chrX 3556469 . C T, 652.64 . AS_QUALapprox=|660|0;AS_VarDP=27|26|0;BaseQRankSum=-0.284;DP=55;MQRankSum=3.748;QUALapprox=660;RAW_GT_COUNT=0,1,0;RAW_MQandDP=138894,55;ReadPosRankSum=-0.570;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:27,26,0:53:99:660,0,680,741,758,1499:15,12,12,14 +chrX 3556470 . C . . END=3556488 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,113,1617 +chrX 3556489 . G A, 654.64 . AS_QUALapprox=|662|0;AS_VarDP=28|25|0;BaseQRankSum=1.379;DP=56;MQRankSum=-4.356;QUALapprox=662;RAW_GT_COUNT=0,1,0;RAW_MQandDP=121066,56;ReadPosRankSum=2.077;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:28,25,0:53:99:662,0,729,746,804,1550:15,13,12,13 +chrX 3556490 . A . . END=3556618 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1644 +chrX 3556619 . T C, 1956.06 . AS_QUALapprox=|1970|0;AS_VarDP=0|64|0;DP=64;QUALapprox=1970;RAW_GT_COUNT=0,0,1;RAW_MQandDP=96835,64;VarDP=64 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:1970,192,0,1970,192,1970:0,0,28,36 +chrX 3556620 . G . . END=3556814 GT:DP:GQ:MIN_DP:PL 0/0:49:75:49:0,75,1255 +chrX 3556815 . C T, 1564.06 . AS_QUALapprox=|1578|0;AS_VarDP=0|49|0;DP=51;QUALapprox=1578;RAW_GT_COUNT=0,0,1;RAW_MQandDP=178011,51;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1578,146,0,1578,146,1578:0,0,18,31 +chrX 3556816 . A . . END=3557084 GT:DP:GQ:MIN_DP:PL 0/0:45:68:45:0,68,1051 +chrX 3557085 . T C, 632.64 . AS_QUALapprox=|640|0;AS_VarDP=17|23|0;BaseQRankSum=0.571;DP=40;MQRankSum=-0.357;QUALapprox=640;RAW_GT_COUNT=0,1,0;RAW_MQandDP=116539,40;ReadPosRankSum=-0.068;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:17,23,0:40:99:640,0,416,690,485,1175:5,12,10,13 +chrX 3557086 . G . . END=3557822 GT:DP:GQ:MIN_DP:PL 0/0:44:72:44:0,72,1023 +chrX 3557823 . A C, 375.64 . AS_QUALapprox=|383|0;AS_VarDP=25|15|0;BaseQRankSum=1.867;DP=41;MQRankSum=-1.382;QUALapprox=383;RAW_GT_COUNT=0,1,0;RAW_MQandDP=72529,41;ReadPosRankSum=-0.363;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:25,15,0:40:99:383,0,644,457,689,1146:15,10,6,9 +chrX 3557824 . T . . END=3557886 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,102,1225 +chrX 3557887 . G A, 488.64 . AS_QUALapprox=|496|0;AS_VarDP=26|19|0;BaseQRankSum=1.125;DP=45;MQRankSum=-3.114;QUALapprox=496;RAW_GT_COUNT=0,1,0;RAW_MQandDP=94038,45;ReadPosRankSum=1.115;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:26,19,0:45:99:496,0,684,574,741,1315:14,12,8,11 +chrX 3557888 . T . . END=3558032 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,111,1331 +chrX 3558033 . G A, 778.64 . AS_QUALapprox=|786|0;AS_VarDP=19|27|0;BaseQRankSum=1.236;DP=49;MQRankSum=-0.191;QUALapprox=786;RAW_GT_COUNT=0,1,0;RAW_MQandDP=121880,49;ReadPosRankSum=-2.645;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:19,27,0:46:99:786,0,512,843,593,1437:16,3,16,11 +chrX 3558034 . T . . END=3558401 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,108,1473 +chrX 3558402 . G T, 663.64 . AS_QUALapprox=|671|0;AS_VarDP=15|25|0;BaseQRankSum=-1.376;DP=42;MQRankSum=4.468;QUALapprox=671;RAW_GT_COUNT=0,1,0;RAW_MQandDP=60662,42;ReadPosRankSum=-1.076;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:15,25,0:40:99:671,0,555,716,630,1346:4,11,8,17 +chrX 3558403 . A . . END=3558408 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,108,1620 +chrX 3558409 . C T, 382.64 . AS_QUALapprox=|390|0;AS_VarDP=25|16|0;BaseQRankSum=0.272;DP=41;MQRankSum=-4.397;QUALapprox=390;RAW_GT_COUNT=0,1,0;RAW_MQandDP=59821,41;ReadPosRankSum=0.497;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:25,16,0:41:99:390,0,981,465,1029,1494:8,17,4,12 +chrX 3558410 . T . . END=3558443 GT:DP:GQ:MIN_DP:PL 0/0:38:73:38:0,73,1142 +chrX 3558444 . A G, 616.64 . AS_QUALapprox=|624|0;AS_VarDP=20|17|0;BaseQRankSum=1.674;DP=37;MQRankSum=-3.295;QUALapprox=624;RAW_GT_COUNT=0,1,0;RAW_MQandDP=54693,37;ReadPosRankSum=-1.098;VarDP=37 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:20,17,0:37:99:0|1:3558444_A_G:624,0,757,684,808,1492:3558444:8,12,8,9 +chrX 3558445 . C . . END=3558460 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,1172 +chrX 3558461 . G A, 568.64 . AS_QUALapprox=|576|0;AS_VarDP=18|15|0;BaseQRankSum=2.157;DP=33;MQRankSum=-3.016;QUALapprox=576;RAW_GT_COUNT=0,1,0;RAW_MQandDP=51660,33;ReadPosRankSum=-0.832;VarDP=33 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:18,15,0:33:99:0|1:3558444_A_G:576,0,699,630,744,1374:3558444:9,9,8,7 +chrX 3558462 . C . . END=3558529 GT:DP:GQ:MIN_DP:PL 0/0:24:25:20:0,25,616 +chrX 3558530 . T . . END=3558531 GT:DP:GQ:MIN_DP:PL 0/0:18:16:18:0,16,481 +chrX 3558532 . T . . END=3558536 GT:DP:GQ:MIN_DP:PL 0/0:18:26:17:0,26,522 +chrX 3558537 . A . . END=3558539 GT:DP:GQ:MIN_DP:PL 0/0:14:4:14:0,4,382 +chrX 3558540 . G . . END=3558540 GT:DP:GQ:MIN_DP:PL 0/0:16:48:16:0,48,475 +chrX 3558541 . T . . END=3558541 GT:DP:GQ:MIN_DP:PL 0/0:17:2:17:0,2,392 +chrX 3558542 . T . . END=3558543 GT:DP:GQ:MIN_DP:PL 0/0:17:26:17:0,26,450 +chrX 3558544 . T . . END=3558544 GT:DP:GQ:MIN_DP:PL 0/0:18:19:18:0,19,465 +chrX 3558545 . G . . END=3558548 GT:DP:GQ:MIN_DP:PL 0/0:19:51:19:0,51,765 +chrX 3558549 . T . . END=3558549 GT:DP:GQ:MIN_DP:PL 0/0:19:18:19:0,18,431 +chrX 3558550 . G . . END=3558555 GT:DP:GQ:MIN_DP:PL 0/0:18:39:18:0,39,506 +chrX 3558556 . A . . END=3558556 GT:DP:GQ:MIN_DP:PL 0/0:18:0:18:0,0,426 +chrX 3558557 . G . . END=3558562 GT:DP:GQ:MIN_DP:PL 0/0:19:51:19:0,51,540 +chrX 3558563 . A . . END=3558563 GT:DP:GQ:MIN_DP:PL 0/0:22:0:22:0,0,506 +chrX 3558564 . G . . END=3558615 GT:DP:GQ:MIN_DP:PL 0/0:28:31:23:0,31,614 +chrX 3558616 . T C, 384.64 . AS_QUALapprox=|392|0;AS_VarDP=18|15|0;BaseQRankSum=-1.923;DP=34;MQRankSum=-0.974;QUALapprox=392;RAW_GT_COUNT=0,1,0;RAW_MQandDP=94357,34;ReadPosRankSum=0.470;VarDP=33 GT:AD:DP:GQ:PL:SB 0/1:18,15,0:33:99:392,0,527,446,572,1018:12,6,9,6 +chrX 3558617 . G . . END=3559195 GT:DP:GQ:MIN_DP:PL 0/0:48:31:47:0,31,1094 +chrX 3559196 . T . . END=3559196 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,1079 +chrX 3559197 . C . . END=3559420 GT:DP:GQ:MIN_DP:PL 0/0:51:22:45:0,22,1166 +chrX 3559421 . G A, 905.64 . AS_QUALapprox=|913|0;AS_VarDP=42|34|0;BaseQRankSum=-0.305;DP=78;MQRankSum=0.449;QUALapprox=913;RAW_GT_COUNT=0,1,0;RAW_MQandDP=276282,78;ReadPosRankSum=1.223;VarDP=76 GT:AD:DP:GQ:PL:SB 0/1:42,34,0:76:99:913,0,1191,1040,1294,2333:21,21,21,13 +chrX 3559422 . G . . END=3559581 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 3559582 . T C, 627.64 . AS_QUALapprox=|635|0;AS_VarDP=24|24|0;BaseQRankSum=1.145;DP=50;MQRankSum=-4.478;QUALapprox=635;RAW_GT_COUNT=0,1,0;RAW_MQandDP=150242,50;ReadPosRankSum=0.660;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:24,24,0:48:99:635,0,640,707,712,1419:14,10,14,10 +chrX 3559583 . G . . END=3559807 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 3559808 . C A, 860.64 . AS_QUALapprox=|868|0;AS_VarDP=27|31|0;BaseQRankSum=1.665;DP=59;MQRankSum=-4.169;QUALapprox=868;RAW_GT_COUNT=0,1,0;RAW_MQandDP=171343,59;ReadPosRankSum=0.250;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:27,31,0:58:99:868,0,679,948,773,1721:13,14,9,22 +chrX 3559809 . G . . END=3559844 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 3559845 . A G, 667.64 . AS_QUALapprox=|675|0;AS_VarDP=31|26|0;BaseQRankSum=1.007;DP=62;MQRankSum=-5.224;QUALapprox=675;RAW_GT_COUNT=0,1,0;RAW_MQandDP=168891,62;ReadPosRankSum=-0.104;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:31,26,0:57:99:675,0,836,768,914,1683:14,17,7,19 +chrX 3559846 . G . . END=3559855 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 3559856 . T C, 479.64 . AS_QUALapprox=|487|0;AS_VarDP=29|20|0;BaseQRankSum=-0.303;DP=52;MQRankSum=-5.280;QUALapprox=487;RAW_GT_COUNT=0,1,0;RAW_MQandDP=135986,52;ReadPosRankSum=-0.662;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:29,20,0:49:99:487,0,811,574,871,1445:12,17,6,14 +chrX 3559857 . G . . END=3559884 GT:DP:GQ:MIN_DP:PL 0/0:46:97:46:0,97,1187 +chrX 3559885 . G A, 351.64 . AS_QUALapprox=|359|0;AS_VarDP=25|14|0;BaseQRankSum=1.321;DP=40;MQRankSum=-4.648;QUALapprox=359;RAW_GT_COUNT=0,1,0;RAW_MQandDP=94892,40;ReadPosRankSum=-0.264;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:25,14,0:39:99:359,0,680,435,722,1157:11,14,4,10 +chrX 3559886 . A . . END=3560021 GT:DP:GQ:MIN_DP:PL 0/0:50:75:50:0,75,1162 +chrX 3560022 . A C, 399.64 . AS_QUALapprox=|407|0;AS_VarDP=28|16|0;BaseQRankSum=1.977;DP=46;MQRankSum=0.121;QUALapprox=407;RAW_GT_COUNT=0,1,0;RAW_MQandDP=70324,46;ReadPosRankSum=0.281;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:28,16,0:44:99:407,0,736,490,784,1274:13,15,10,6 +chrX 3560023 . A . . END=3560365 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,102,1316 +chrX 3560366 . C A, 521.64 . AS_QUALapprox=|529|0;AS_VarDP=29|21|0;BaseQRankSum=0.331;DP=54;MQRankSum=0.000;QUALapprox=529;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=1.180;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:29,21,0:50:99:529,0,818,616,881,1497:15,14,10,11 +chrX 3560367 . C . . END=3560908 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,102,1404 +chrX 3560909 . C G, 579.64 . AS_QUALapprox=|587|0;AS_VarDP=25|23|0;BaseQRankSum=2.028;DP=50;MQRankSum=0.000;QUALapprox=587;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=0.578;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:25,23,0:48:99:587,0,605,661,674,1334:16,9,13,10 +chrX 3560910 . T . . END=3561323 GT:DP:GQ:MIN_DP:PL 0/0:43:34:42:0,34,909 +chrX 3561324 . T C, 634.64 . AS_QUALapprox=|642|0;AS_VarDP=14|25|0;BaseQRankSum=-2.311;DP=40;MQRankSum=0.000;QUALapprox=642;RAW_GT_COUNT=0,1,0;RAW_MQandDP=144000,40;ReadPosRankSum=-1.787;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:14,25,0:39:99:642,0,370,684,445,1129:9,5,14,11 +chrX 3561325 . T . . END=3561506 GT:DP:GQ:MIN_DP:PL 0/0:48:76:48:0,76,1286 +chrX 3561507 . TTTTATTTA T, 522.60 . AS_QUALapprox=|530|0;AS_VarDP=11|14|0;BaseQRankSum=2.089;DP=45;MQRankSum=0.000;QUALapprox=530;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=-0.822;VarDP=25 GT:AD:DP:GQ:PL:SB 0/1:11,14,0:25:99:530,0,409,563,453,1016:6,5,6,8 +chrX 3561516 . T . . END=3562679 GT:DP:GQ:MIN_DP:PL 0/0:62:48:62:0,48,1215 +chrX 3562680 . T C, 514.64 . AS_QUALapprox=|522|0;AS_VarDP=36|22|0;BaseQRankSum=-1.554;DP=59;MQRankSum=0.000;QUALapprox=522;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=0.289;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:36,22,0:58:99:522,0,1043,631,1109,1739:13,23,6,16 +chrX 3562681 . T . . END=3563456 GT:DP:GQ:MIN_DP:PL 0/0:58:93:58:0,93,1300 +chrX 3563457 . C G, 777.64 . AS_QUALapprox=|785|0;AS_VarDP=11|30|0;BaseQRankSum=-1.392;DP=43;MQRankSum=0.000;QUALapprox=785;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154800,43;ReadPosRankSum=-2.061;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:11,30,0:41:99:785,0,251,818,339,1157:10,1,19,11 +chrX 3563458 . T . . END=3564638 GT:DP:GQ:MIN_DP:PL 0/0:57:73:57:0,73,1210 +chrX 3564639 . T G, 697.64 . AS_QUALapprox=|705|0;AS_VarDP=37|29|0;BaseQRankSum=0.095;DP=68;MQRankSum=0.000;QUALapprox=705;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=1.829;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:37,29,0:66:99:705,0,953,816,1039,1855:19,18,16,13 +chrX 3564640 . A . . END=3565125 GT:DP:GQ:MIN_DP:PL 0/0:55:92:55:0,92,1455 +chrX 3565126 . A C, 979.64 . AS_QUALapprox=|987|0;AS_VarDP=26|27|0;BaseQRankSum=-1.968;DP=53;MQRankSum=0.000;QUALapprox=987;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=0.834;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,27,0:53:99:0|1:3565126_A_C:987,0,891,1065,972,2037:3565126:13,13,11,16 +chrX 3565127 . G . . END=3565137 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 3565138 . TA T, 1040.60 . AS_QUALapprox=|1048|0;AS_VarDP=26|30|0;BaseQRankSum=-0.703;DP=57;MQRankSum=0.000;QUALapprox=1048;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-0.774;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,30,0:56:99:0|1:3565126_A_C:1048,0,852,1126,942,2068:3565126:16,10,14,16 +chrX 3565140 . A . . END=3565638 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,101,1414 +chrX 3565639 . T C, 645.64 . AS_QUALapprox=|653|0;AS_VarDP=44|26|0;BaseQRankSum=-1.195;DP=73;MQRankSum=0.000;QUALapprox=653;RAW_GT_COUNT=0,1,0;RAW_MQandDP=261225,73;ReadPosRankSum=1.830;VarDP=70 GT:AD:DP:GQ:PL:SB 0/1:44,26,0:70:99:653,0,1239,786,1317,2103:26,18,15,11 +chrX 3565640 . G . . END=3565744 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 3565745 . C T, 511.64 . AS_QUALapprox=|519|0;AS_VarDP=36|21|0;BaseQRankSum=-0.113;DP=60;MQRankSum=0.000;QUALapprox=519;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=0.654;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:36,21,0:57:99:519,0,989,627,1052,1679:17,19,9,12 +chrX 3565746 . C . . END=3566100 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,104,1533 +chrX 3566101 . A G, 911.64 . AS_QUALapprox=|919|0;AS_VarDP=20|34|0;BaseQRankSum=-1.629;DP=55;MQRankSum=0.000;QUALapprox=919;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-0.654;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:20,34,0:54:99:919,0,513,980,615,1595:10,10,19,15 +chrX 3566102 . A . . END=3566766 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 3566767 . A C, 2412.06 . AS_QUALapprox=|2426|0;AS_VarDP=0|74|0;DP=77;QUALapprox=2426;RAW_GT_COUNT=0,0,1;RAW_MQandDP=277200,77;VarDP=74 GT:AD:DP:GQ:PL:SB 1/1:0,74,0:74:99:2426,222,0,2426,222,2426:0,0,40,34 +chrX 3566768 . G . . END=3567069 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 3567070 . C CT, 249.60 . AS_QUALapprox=|257|0;AS_VarDP=30|15|0;BaseQRankSum=-0.086;DP=58;MQRankSum=0.000;QUALapprox=257;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=2.156;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:30,15,0:45:99:257,0,649,347,694,1041:15,15,8,7 +chrX 3567071 . T . . END=3567097 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,117,1599 +chrX 3567098 . A C, 524.64 . AS_QUALapprox=|532|0;AS_VarDP=30|21|0;BaseQRankSum=-0.144;DP=56;MQRankSum=0.000;QUALapprox=532;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-1.312;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:30,21,0:51:99:532,0,850,622,913,1534:14,16,12,9 +chrX 3567099 . C . . END=3568247 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,99,1270 +chrX 3568248 . G A, 804.64 . AS_QUALapprox=|812|0;AS_VarDP=34|33|0;BaseQRankSum=-0.366;DP=69;MQRankSum=0.000;QUALapprox=812;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=0.389;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:34,33,0:67:99:812,0,836,913,935,1848:18,16,21,12 +chrX 3568249 . T . . END=3568952 GT:DP:GQ:MIN_DP:PL 0/0:51:74:51:0,74,1247 +chrX 3568953 . A C, 571.64 . AS_QUALapprox=|579|0;AS_VarDP=34|22|0;BaseQRankSum=2.305;DP=56;MQRankSum=0.841;QUALapprox=579;RAW_GT_COUNT=0,1,0;RAW_MQandDP=200025,56;ReadPosRankSum=-0.277;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:34,22,0:56:99:579,0,867,680,933,1613:18,16,10,12 +chrX 3568954 . A . . END=3569708 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,103,1271 +chrX 3569709 . C G, 624.64 . AS_QUALapprox=|632|0;AS_VarDP=25|24|0;BaseQRankSum=0.557;DP=51;MQRankSum=0.000;QUALapprox=632;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-0.370;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:25,24,0:49:99:632,0,662,707,734,1441:8,17,7,17 +chrX 3569710 . C . . END=3570006 GT:DP:GQ:MIN_DP:PL 0/0:37:65:37:0,65,924 +chrX 3570007 . G . . END=3570007 GT:DP:GQ:MIN_DP:PL 0/0:38:10:38:0,10,1012 +chrX 3570008 . G GAAAA, 608.86 . AS_QUALapprox=|616|0;AS_VarDP=3|16|0;BaseQRankSum=-1.417;DP=27;MQRankSum=-0.862;QUALapprox=616;RAW_GT_COUNT=0,1,0;RAW_MQandDP=91790,27;ReadPosRankSum=0.955;VarDP=19 GT:AD:DP:GQ:PL:SB 0/1:3,16,0:19:2:616,0,2,625,50,676:0,3,10,6 +chrX 3570009 . A . . END=3570015 GT:DP:GQ:MIN_DP:PL 0/0:20:42:20:0,42,630 +chrX 3570016 . T . . END=3570016 GT:DP:GQ:MIN_DP:PL 0/0:18:0:18:0,0,357 +chrX 3570017 . A . . END=3570028 GT:DP:GQ:MIN_DP:PL 0/0:19:39:18:0,39,585 +chrX 3570029 . G . . END=3570029 GT:DP:GQ:MIN_DP:PL 0/0:14:17:14:0,17,377 +chrX 3570030 . T . . END=3570032 GT:DP:GQ:MIN_DP:PL 0/0:16:36:16:0,36,540 +chrX 3570033 . A ATATATATATGTATATATATG, 370.02 . AS_QUALapprox=|384|0;AS_VarDP=0|10|0;DP=19;QUALapprox=384;RAW_GT_COUNT=0,0,1;RAW_MQandDP=61296,19;VarDP=10 GT:AD:DP:GQ:PL:SB 1/1:0,10,0:10:29:384,29,0,385,30,387:0,0,5,5 +chrX 3570034 . T . . END=3570060 GT:DP:GQ:MIN_DP:PL 0/0:32:21:29:0,21,765 +chrX 3570061 . A . . END=3570061 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,366 +chrX 3570062 . T . . END=3570070 GT:DP:GQ:MIN_DP:PL 0/0:29:37:24:0,37,704 +chrX 3570071 . G A, 140.13 . AS_QUALapprox=|154|0;AS_VarDP=0|4|0;DP=16;QUALapprox=154;RAW_GT_COUNT=0,0,1;RAW_MQandDP=45161,16;VarDP=4 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,4,0:4:12:0|1:3570071_G_A:154,12,0,155,13,156:3570071:0,0,2,2 +chrX 3570072 . T . . END=3570072 GT:DP:GQ:MIN_DP:PL 0/0:14:39:14:0,39,585 +chrX 3570073 . A G, 140.29 . AS_QUALapprox=|154|0;AS_VarDP=0|4|0;DP=15;QUALapprox=154;RAW_GT_COUNT=0,0,1;RAW_MQandDP=44432,15;VarDP=4 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,4,0:4:11:0|1:3570071_G_A:154,11,0,155,12,156:3570071:0,0,2,2 +chrX 3570074 . T . . END=3570092 GT:DP:GQ:MIN_DP:PL 0/0:15:20:13:0,20,411 +chrX 3570093 . ATATATG A, 139.24 . AS_QUALapprox=|153|0;AS_VarDP=0|4|0;DP=21;QUALapprox=153;RAW_GT_COUNT=0,0,1;RAW_MQandDP=61217,21;VarDP=4 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,4,0:4:11:0|1:3570071_G_A:153,11,0,154,12,156:3570071:0,0,2,2 +chrX 3570100 . T . . END=3570105 GT:DP:GQ:MIN_DP:PL 0/0:22:54:22:0,54,685 +chrX 3570106 . T . . END=3570130 GT:DP:GQ:MIN_DP:PL 0/0:22:16:21:0,16,246 +chrX 3570131 . A *,AT, 199.59 . AS_QUALapprox=|0|787|0;AS_VarDP=0|0|4|0;DP=19;QUALapprox=787;RAW_GT_COUNT=0,0,1;RAW_MQandDP=56276,19;VarDP=4 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 2|2:0,0,4,0:4:10:0|1:3570071_G_A:787,201,156,57,10,0,519,202,57,473:3570071:0,0,2,2 +chrX 3570132 . A . . END=3570181 GT:DP:GQ:MIN_DP:PL 0/0:19:25:18:0,25,487 +chrX 3570182 . A . . END=3570182 GT:DP:GQ:MIN_DP:PL 0/0:23:6:23:0,6,50 +chrX 3570183 . T . . END=3570193 GT:DP:GQ:MIN_DP:PL 0/0:22:51:22:0,51,664 +chrX 3570194 . A . . END=3570194 GT:DP:GQ:MIN_DP:PL 0/0:24:5:24:0,5,50 +chrX 3570195 . T . . END=3570203 GT:DP:GQ:MIN_DP:PL 0/0:23:38:21:0,38,620 +chrX 3570204 . G . . END=3570204 GT:DP:GQ:MIN_DP:PL 0/0:24:3:24:0,3,5 +chrX 3570205 . T . . END=3570207 GT:DP:GQ:MIN_DP:PL 0/0:23:45:23:0,45,675 +chrX 3570208 . A . . END=3570208 GT:DP:GQ:MIN_DP:PL 0/0:24:3:24:0,3,5 +chrX 3570209 . T . . END=3570221 GT:DP:GQ:MIN_DP:PL 0/0:21:42:21:0,42,630 +chrX 3570222 . G GTA, 0.02 . AS_QUALapprox=|4|0;AS_VarDP=0|0|0;DP=24;QUALapprox=4;RAW_GT_COUNT=0,0,1;RAW_MQandDP=76755,24;VarDP=24 GT:AD:DP:GQ:PL:SB 1/1:0,0,0:0:2:4,2,0,4,2,5:0,0,0,0 +chrX 3570223 . T . . END=3570227 GT:DP:GQ:MIN_DP:PL 0/0:21:42:21:0,42,630 +chrX 3570228 . A . . END=3570232 GT:DP:GQ:MIN_DP:PL 0/0:25:2:25:0,2,4 +chrX 3570233 . T . . END=3570254 GT:DP:GQ:MIN_DP:PL 0/0:20:33:20:0,33,495 +chrX 3570255 . T . . END=3570256 GT:DP:GQ:MIN_DP:PL 0/0:21:0:21:0,0,540 +chrX 3570257 . T . . END=3570263 GT:DP:GQ:MIN_DP:PL 0/0:20:42:20:0,42,630 +chrX 3570264 . G . . END=3570264 GT:DP:GQ:MIN_DP:PL 0/0:23:0:23:0,0,0 +chrX 3570265 . T . . END=3570265 GT:DP:GQ:MIN_DP:PL 0/0:21:48:21:0,48,720 +chrX 3570266 . G GTATATATGTA,GTATATATGTATATATATGTATATATGTATATATGTA, 604.51 . AS_QUALapprox=|612|607|0;AS_VarDP=0|0|0|0;DP=31;QUALapprox=612;RAW_GT_COUNT=0,1,0;RAW_MQandDP=81713,31;VarDP=3 GT:AD:DP:GQ:PL:SB 0/1:3,0,0,0:3:5:612,0,71,5,74,77,340,126,131,413:2,1,0,0 +chrX 3570267 . T . . END=3570307 GT:DP:GQ:MIN_DP:PL 0/0:47:44:47:0,44,669 +chrX 3570308 . A . . END=3570308 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,1236 +chrX 3570309 . T . . END=3570309 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,114,1710 +chrX 3570310 . G . . END=3570310 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,1116 +chrX 3570311 . T . . END=3570317 GT:DP:GQ:MIN_DP:PL 0/0:37:93:37:0,93,1007 +chrX 3570318 . G GTATATA,A, 417.64 . AS_QUALapprox=|6|425|0;AS_VarDP=26|0|10|0;BaseQRankSum=1.419;DP=40;MQRankSum=-0.782;QUALapprox=425;RAW_GT_COUNT=0,1,0;RAW_MQandDP=112120,40;ReadPosRankSum=-0.936;VarDP=36 GT:AD:DP:GQ:PL:SB 0/2:26,0,10,0:36:99:425,419,1447,0,1035,1042,465,1459,1062,1515:12,14,4,6 +chrX 3570319 . T . . END=3570329 GT:DP:GQ:MIN_DP:PL 0/0:39:91:39:0,91,1097 +chrX 3570330 . A ATATATATGTGTATATATG,ATATATGTATATATATGTGTATATATG, 539.60 . AS_QUALapprox=|108|547|0;AS_VarDP=19|0|11|0;BaseQRankSum=1.641;DP=47;MQRankSum=-2.587;QUALapprox=547;RAW_GT_COUNT=0,1,0;RAW_MQandDP=135320,47;ReadPosRankSum=-0.689;VarDP=30 GT:AD:DP:GQ:PL:SB 0/2:19,0,11,0:30:99:547,439,1283,0,773,1034,552,1282,946,1494:8,11,5,6 +chrX 3570331 . T . . END=3571113 GT:DP:GQ:MIN_DP:PL 0/0:53:74:53:0,74,1230 +chrX 3571114 . T A, 2115.06 . AS_QUALapprox=|2129|0;AS_VarDP=0|65|0;DP=66;QUALapprox=2129;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=65 GT:AD:DP:GQ:PL:SB 1/1:0,65,0:65:99:2129,195,0,2129,195,2129:0,0,35,30 +chrX 3571115 . G . . END=3571149 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 3571150 . C T, 1058.64 . AS_QUALapprox=|1066|0;AS_VarDP=21|38|0;BaseQRankSum=0.772;DP=61;MQRankSum=0.000;QUALapprox=1066;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=1.647;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:21,38,0:59:99:1066,0,488,1129,602,1731:12,9,20,18 +chrX 3571151 . T . . END=3571785 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 3571786 . G C, 607.64 . AS_QUALapprox=|615|0;AS_VarDP=29|24|0;BaseQRankSum=-2.816;DP=56;MQRankSum=0.000;QUALapprox=615;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-0.536;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:29,24,0:53:99:615,0,849,702,921,1623:13,16,8,16 +chrX 3571787 . T . . END=3572745 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,119,1549 +chrX 3572746 . G C, 715.64 . AS_QUALapprox=|723|0;AS_VarDP=35|27|0;BaseQRankSum=1.232;DP=64;MQRankSum=0.000;QUALapprox=723;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=-0.646;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:35,27,0:62:99:723,0,935,827,1017,1844:16,19,14,13 +chrX 3572747 . T . . END=3573019 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 3573020 . G T, 791.64 . AS_QUALapprox=|799|0;AS_VarDP=30|28|0;BaseQRankSum=2.490;DP=59;MQRankSum=0.000;QUALapprox=799;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=0.879;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:30,28,0:58:99:799,0,794,889,878,1766:14,16,13,15 +chrX 3573021 . A . . END=3573177 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,110,1544 +chrX 3573178 . G A, 733.64 . AS_QUALapprox=|741|0;AS_VarDP=20|27|0;BaseQRankSum=0.865;DP=49;MQRankSum=0.000;QUALapprox=741;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=0.581;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:20,27,0:47:99:741,0,490,801,570,1371:9,11,14,13 +chrX 3573179 . A . . END=3573288 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,102,1445 +chrX 3573289 . G C, 874.64 . AS_QUALapprox=|882|0;AS_VarDP=34|31|0;BaseQRankSum=3.458;DP=67;MQRankSum=0.000;QUALapprox=882;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=0.966;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:34,31,0:65:99:882,0,876,984,969,1954:14,20,20,11 +chrX 3573290 . T . . END=3573445 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 3573446 . C T, 939.64 . AS_QUALapprox=|947|0;AS_VarDP=27|33|0;BaseQRankSum=1.522;DP=60;MQRankSum=0.000;QUALapprox=947;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=0.936;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:27,33,0:60:99:947,0,693,1028,793,1820:16,11,15,18 +chrX 3573447 . C . . END=3573670 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 3573671 . A G, 678.64 . AS_QUALapprox=|686|0;AS_VarDP=21|25|0;BaseQRankSum=-0.286;DP=49;MQRankSum=0.000;QUALapprox=686;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=0.077;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:21,25,0:46:99:686,0,571,749,645,1394:9,12,12,13 +chrX 3573672 . A . . END=3573740 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,109,1549 +chrX 3573741 . T C, 748.64 . AS_QUALapprox=|756|0;AS_VarDP=25|27|0;BaseQRankSum=1.071;DP=54;MQRankSum=0.000;QUALapprox=756;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=1.063;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:25,27,0:52:99:756,0,683,831,764,1595:15,10,21,6 +chrX 3573742 . G . . END=3574468 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 3574469 . G A, 695.64 . AS_QUALapprox=|703|0;AS_VarDP=22|26|0;BaseQRankSum=0.924;DP=49;MQRankSum=0.000;QUALapprox=703;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=0.466;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:22,26,0:48:99:703,0,561,769,638,1408:5,17,10,16 +chrX 3574470 . C . . END=3576820 GT:DP:GQ:MIN_DP:PL 0/0:59:82:59:0,82,1091 +chrX 3576821 . C A, 397.64 . AS_QUALapprox=|405|0;AS_VarDP=35|17|0;BaseQRankSum=0.895;DP=52;MQRankSum=0.000;QUALapprox=405;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=-0.322;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:35,17,0:52:99:405,0,945,510,996,1506:18,17,10,7 +chrX 3576822 . A . . END=3577171 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,118,1444 +chrX 3577172 . G A, 907.64 . AS_QUALapprox=|915|0;AS_VarDP=23|31|0;BaseQRankSum=2.072;DP=54;MQRankSum=0.000;QUALapprox=915;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=0.814;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:23,31,0:54:99:915,0,607,984,700,1685:13,10,17,14 +chrX 3577173 . G . . END=3577197 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 3577198 . G A, 532.64 . AS_QUALapprox=|540|0;AS_VarDP=28|20|0;BaseQRankSum=1.843;DP=51;MQRankSum=0.000;QUALapprox=540;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-2.824;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:28,20,0:48:99:540,0,744,624,804,1428:16,12,9,11 +chrX 3577199 . G . . END=3577487 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,115,1336 +chrX 3577488 . C T, 1007.64 . AS_QUALapprox=|1015|0;AS_VarDP=21|36|0;BaseQRankSum=1.648;DP=57;MQRankSum=0.000;QUALapprox=1015;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-1.689;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:21,36,0:57:99:1015,0,489,1078,597,1675:11,10,20,16 +chrX 3577489 . G . . END=3577985 GT:DP:GQ:MIN_DP:PL 0/0:60:95:60:0,95,1420 +chrX 3577986 . G A, 891.64 . AS_QUALapprox=|899|0;AS_VarDP=25|31|0;BaseQRankSum=2.901;DP=59;MQRankSum=0.000;QUALapprox=899;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=0.272;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:25,31,0:56:99:899,0,620,974,713,1687:15,10,18,13 +chrX 3577987 . T . . END=3579044 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,104,1500 +chrX 3579045 . C G, 1569.06 . AS_QUALapprox=|1583|0;AS_VarDP=0|49|0;DP=49;QUALapprox=1583;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1583,146,0,1583,146,1583:0,0,21,28 +chrX 3579046 . T . . END=3579749 GT:DP:GQ:MIN_DP:PL 0/0:50:61:50:0,61,1255 +chrX 3579750 . AAAAG A, 764.60 . AS_QUALapprox=|772|0;AS_VarDP=18|20|0;BaseQRankSum=2.028;DP=44;MQRankSum=0.000;QUALapprox=772;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=-0.701;VarDP=38 GT:AD:DP:GQ:PL:SB 0/1:18,20,0:38:99:772,0,652,827,713,1539:14,4,15,5 +chrX 3579755 . A . . END=3580515 GT:DP:GQ:MIN_DP:PL 0/0:57:93:57:0,93,1384 +chrX 3580516 . C T, 672.64 . AS_QUALapprox=|680|0;AS_VarDP=27|26|0;BaseQRankSum=0.574;DP=56;MQRankSum=0.000;QUALapprox=680;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-1.210;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:27,26,0:53:99:680,0,695,761,773,1533:14,13,10,16 +chrX 3580517 . T . . END=3581997 GT:DP:GQ:MIN_DP:PL 0/0:54:66:54:0,66,1290 +chrX 3581998 . G A, 474.64 . AS_QUALapprox=|482|0;AS_VarDP=27|19|0;BaseQRankSum=-0.195;DP=47;MQRankSum=0.000;QUALapprox=482;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=0.067;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:27,19,0:46:99:482,0,750,563,807,1371:16,11,11,8 +chrX 3581999 . T . . END=3582956 GT:DP:GQ:MIN_DP:PL 0/0:66:78:66:0,78,1436 +chrX 3582957 . A G, 984.64 . AS_QUALapprox=|992|0;AS_VarDP=33|35|0;BaseQRankSum=1.282;DP=70;MQRankSum=0.000;QUALapprox=992;RAW_GT_COUNT=0,1,0;RAW_MQandDP=252000,70;ReadPosRankSum=-0.239;VarDP=68 GT:AD:DP:GQ:PL:SB 0/1:33,35,0:68:99:992,0,893,1091,998,2089:17,16,16,19 +chrX 3582958 . A . . END=3583054 GT:DP:GQ:MIN_DP:PL 0/0:85:99:85:0,120,1800 +chrX 3583055 . A G, 1013.64 . AS_QUALapprox=|1021|0;AS_VarDP=39|39|0;BaseQRankSum=-0.527;DP=80;MQRankSum=0.000;QUALapprox=1021;RAW_GT_COUNT=0,1,0;RAW_MQandDP=288000,80;ReadPosRankSum=0.315;VarDP=78 GT:AD:DP:GQ:PL:SB 0/1:39,39,0:78:99:1021,0,1040,1138,1157,2295:20,19,16,23 +chrX 3583056 . G . . END=3583870 GT:DP:GQ:MIN_DP:PL 0/0:53:80:53:0,80,1103 +chrX 3583871 . G C, 294.64 . AS_QUALapprox=|302|0;AS_VarDP=20|12|0;BaseQRankSum=0.031;DP=33;MQRankSum=0.000;QUALapprox=302;RAW_GT_COUNT=0,1,0;RAW_MQandDP=118800,33;ReadPosRankSum=-0.390;VarDP=32 GT:AD:DP:GQ:PL:SB 0/1:20,12,0:32:99:302,0,537,361,573,934:12,8,7,5 +chrX 3583872 . G . . END=3584125 GT:DP:GQ:MIN_DP:PL 0/0:46:29:42:0,29,804 +chrX 3584126 . TGAGA T, 970.60 . AS_QUALapprox=|978|0;AS_VarDP=22|25|0;BaseQRankSum=-1.875;DP=50;MQRankSum=0.000;QUALapprox=978;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=-0.587;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:22,25,0:47:99:978,0,848,1044,924,1968:8,14,14,11 +chrX 3584131 . G . . END=3584697 GT:DP:GQ:MIN_DP:PL 0/0:51:63:49:0,63,1430 +chrX 3584698 . A G, 662.64 . AS_QUALapprox=|670|0;AS_VarDP=23|25|0;BaseQRankSum=-1.960;DP=51;MQRankSum=0.000;QUALapprox=670;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=0.516;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:23,25,0:48:99:670,0,656,739,730,1469:14,9,14,11 +chrX 3584699 . T . . END=3584854 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,118,1484 +chrX 3584855 . CA C, 607.60 . AS_QUALapprox=|615|0;AS_VarDP=24|25|0;BaseQRankSum=-0.792;DP=54;MQRankSum=0.000;QUALapprox=615;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=1.131;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:24,25,0:49:99:615,0,584,687,660,1347:9,15,18,7 +chrX 3584857 . A . . END=3585537 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,102,1606 +chrX 3585538 . CTT C, 974.60 . AS_QUALapprox=|982|0;AS_VarDP=29|31|0;BaseQRankSum=0.881;DP=65;MQRankSum=0.000;QUALapprox=982;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=0.632;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:29,31,0:60:99:982,0,812,1069,905,1974:15,14,14,17 +chrX 3585541 . T . . END=3587411 GT:DP:GQ:MIN_DP:PL 0/0:59:77:59:0,77,1081 +chrX 3587412 . A G, 682.64 . AS_QUALapprox=|690|0;AS_VarDP=36|27|0;BaseQRankSum=0.319;DP=66;MQRankSum=0.000;QUALapprox=690;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=-0.195;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:36,27,0:63:99:690,0,957,797,1038,1835:13,23,10,17 +chrX 3587413 . T . . END=3587806 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,104,1543 +chrX 3587807 . T C, 1991.06 . AS_QUALapprox=|2005|0;AS_VarDP=0|61|0;DP=65;QUALapprox=2005;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=61 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:2005,183,0,2005,183,2005:0,0,27,34 +chrX 3587808 . T . . END=3588627 GT:DP:GQ:MIN_DP:PL 0/0:50:26:45:0,26,1113 +chrX 3588628 . C CA, 737.03 . AS_QUALapprox=|751|0;AS_VarDP=0|40|0;DP=58;QUALapprox=751;RAW_GT_COUNT=0,0,1;RAW_MQandDP=200993,58;VarDP=40 GT:AD:DP:GQ:PL:SB 1/1:0,40,0:40:99:751,116,0,751,116,751:0,0,15,25 +chrX 3588629 . A . . END=3590377 GT:DP:GQ:MIN_DP:PL 0/0:57:54:57:0,54,1175 +chrX 3590378 . A G, 2139.06 . AS_QUALapprox=|2153|0;AS_VarDP=0|67|0;DP=68;QUALapprox=2153;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;VarDP=67 GT:AD:DP:GQ:PL:SB 1/1:0,67,0:67:99:2153,200,0,2153,200,2153:0,0,28,39 +chrX 3590379 . T . . END=3590511 GT:DP:GQ:MIN_DP:PL 0/0:31:21:30:0,21,894 +chrX 3590512 . T . . END=3590514 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,790 +chrX 3590515 . A . . END=3590515 GT:DP:GQ:MIN_DP:PL 0/0:36:66:36:0,66,990 +chrX 3590516 . C . . END=3590517 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,587 +chrX 3590518 . A . . END=3590522 GT:DP:GQ:MIN_DP:PL 0/0:40:26:39:0,26,990 +chrX 3590523 . T . . END=3590523 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,371 +chrX 3590524 . A . . END=3590524 GT:DP:GQ:MIN_DP:PL 0/0:44:87:44:0,87,1305 +chrX 3590525 . C CAAAA,CAAAAA, 1090.02 . AS_QUALapprox=|950|1073|0;AS_VarDP=0|5|12|0;DP=40;QUALapprox=1107;RAW_GT_COUNT=0,0,1;RAW_MQandDP=137458,40;VarDP=17 GT:AD:DP:GQ:PL:SB 1/2:0,5,12,0:17:34:1107,236,157,118,0,34,751,235,117,675:0,0,10,7 +chrX 3590526 . A . . END=3590547 GT:DP:GQ:MIN_DP:PL 0/0:42:75:42:0,75,1125 +chrX 3590548 . T . . END=3590549 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,892 +chrX 3590550 . A . . END=3590550 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,111,1665 +chrX 3590551 . G . . END=3590551 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,1171 +chrX 3590552 . C . . END=3590651 GT:DP:GQ:MIN_DP:PL 0/0:47:63:47:0,63,1244 +chrX 3590652 . G A, 1272.06 . AS_QUALapprox=|1286|0;AS_VarDP=0|37|0;DP=40;QUALapprox=1286;RAW_GT_COUNT=0,0,1;RAW_MQandDP=142801,40;VarDP=37 GT:AD:DP:GQ:PL:SB 1/1:0,37,0:37:99:1286,111,0,1286,111,1286:0,0,20,17 +chrX 3590653 . T . . END=3590696 GT:DP:GQ:MIN_DP:PL 0/0:35:45:35:0,45,675 +chrX 3590697 . C CA, 356.03 . AS_QUALapprox=|370|0;AS_VarDP=0|23|0;DP=45;QUALapprox=370;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151602,45;VarDP=23 GT:AD:DP:GQ:PL:SB 1/1:0,23,0:23:65:370,65,0,370,65,371:0,0,12,11 +chrX 3590698 . A . . END=3590874 GT:DP:GQ:MIN_DP:PL 0/0:48:35:46:0,35,1185 +chrX 3590875 . C T, 1965.06 . AS_QUALapprox=|1979|0;AS_VarDP=0|59|0;DP=61;QUALapprox=1979;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1979,177,0,1979,177,1979:0,0,28,31 +chrX 3590876 . G . . END=3591225 GT:DP:GQ:MIN_DP:PL 0/0:55:91:55:0,91,1310 +chrX 3591226 . T C, 1167.06 . AS_QUALapprox=|1181|0;AS_VarDP=1|38|0;BaseQRankSum=-0.485;DP=39;MQRankSum=0.000;QUALapprox=1181;RAW_GT_COUNT=0,0,1;RAW_MQandDP=139201,39;ReadPosRankSum=-0.133;VarDP=39 GT:AD:DP:GQ:PL:SB 1/1:1,38,0:39:82:1181,82,0,1184,114,1216:0,1,20,18 +chrX 3591227 . G . . END=3591271 GT:DP:GQ:MIN_DP:PL 0/0:40:75:40:0,75,1191 +chrX 3591272 . C CA,CAA, 1565.02 . AS_QUALapprox=|1334|1154|0;AS_VarDP=0|22|15|0;DP=51;QUALapprox=1582;RAW_GT_COUNT=0,0,1;RAW_MQandDP=178642,51;VarDP=37 GT:AD:DP:GQ:PL:SB 1/2:0,22,15,0:37:99:1582,367,248,536,0,428,1279,361,530,1185:0,0,20,17 +chrX 3591273 . A . . END=3591286 GT:DP:GQ:MIN_DP:PL 0/0:43:96:43:0,96,1440 +chrX 3591287 . G GA, 1838.03 . AS_QUALapprox=|1852|0;AS_VarDP=0|46|0;DP=48;QUALapprox=1852;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169041,48;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1852,138,0,1853,138,1853:0,0,25,21 +chrX 3591288 . A . . END=3591811 GT:DP:GQ:MIN_DP:PL 0/0:55:64:55:0,64,1150 +chrX 3591812 . T C, 1916.06 . AS_QUALapprox=|1930|0;AS_VarDP=0|60|0;DP=63;QUALapprox=1930;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:1930,179,0,1930,179,1930:0,0,31,29 +chrX 3591813 . G . . END=3592235 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 3592236 . A G, 552.64 . AS_QUALapprox=|560|0;AS_VarDP=30|23|0;BaseQRankSum=0.151;DP=56;MQRankSum=0.000;QUALapprox=560;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=2.092;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:30,23,0:53:99:560,0,773,650,842,1492:11,19,11,12 +chrX 3592237 . G . . END=3593155 GT:DP:GQ:MIN_DP:PL 0/0:58:81:58:0,81,1440 +chrX 3593156 . G A, 588.64 . AS_QUALapprox=|596|0;AS_VarDP=35|23|0;BaseQRankSum=2.026;DP=59;MQRankSum=0.000;QUALapprox=596;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=0.064;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:35,23,0:58:99:596,0,897,700,966,1667:13,22,12,11 +chrX 3593157 . A . . END=3593494 GT:DP:GQ:MIN_DP:PL 0/0:51:93:51:0,93,1395 +chrX 3593495 . G . . END=3593495 GT:DP:GQ:MIN_DP:PL 0/0:38:6:38:0,6,1033 +chrX 3593496 . A . . END=3595223 GT:DP:GQ:MIN_DP:PL 0/0:58:59:58:0,59,1020 +chrX 3595224 . AATATG A, 1040.60 . AS_QUALapprox=|1048|0;AS_VarDP=22|27|0;BaseQRankSum=-0.837;DP=52;MQRankSum=0.000;QUALapprox=1048;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187081,52;ReadPosRankSum=-0.244;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:22,27,0:49:99:1048,0,832,1114,913,2027:9,13,10,17 +chrX 3595230 . A . . END=3595516 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,107,1559 +chrX 3595517 . C G, 1694.06 . AS_QUALapprox=|1708|0;AS_VarDP=0|50|0;DP=53;QUALapprox=1708;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1708,150,0,1708,150,1708:0,0,31,19 +chrX 3595518 . A . . END=3595635 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,111,1445 +chrX 3595636 . AC A, 542.60 . AS_QUALapprox=|550|0;AS_VarDP=29|17|0;BaseQRankSum=1.190;DP=47;MQRankSum=0.000;QUALapprox=550;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=0.363;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:29,17,0:46:99:550,0,1017,637,1068,1705:15,14,9,8 +chrX 3595638 . A . . END=3596712 GT:DP:GQ:MIN_DP:PL 0/0:56:70:56:0,70,919 +chrX 3596713 . GTATC G,GTATCTATC, 318.60 . AS_QUALapprox=|0|326|0;AS_VarDP=22|0|13|0;BaseQRankSum=1.173;DP=49;MQRankSum=0.000;QUALapprox=326;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=-0.674;VarDP=35 GT:AD:DP:GQ:PL:SB 0/2:22,0,13,0:35:99:326,441,1662,0,928,1148,451,1543,1075,1631:14,8,10,3 +chrX 3596718 . T . . END=3596725 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,114,1710 +chrX 3596726 . T C,TATCC,TATCTATCC, 616.64 . AS_QUALapprox=|624|0|0|0;AS_VarDP=15|21|0|0|0;BaseQRankSum=-1.172;DP=49;MQRankSum=0.000;QUALapprox=624;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=0.835;VarDP=36 GT:AD:DP:GQ:PL:SB 0/1:15,21,0,0,0:36:99:624,0,670,723,632,1675,715,628,1630,1775,723,731,1709,1729,1808:12,3,13,8 +chrX 3596727 . A . . END=3597294 GT:DP:GQ:MIN_DP:PL 0/0:55:43:55:0,43,1191 +chrX 3597295 . G A, 1612.06 . AS_QUALapprox=|1626|0;AS_VarDP=2|49|0;BaseQRankSum=2.447;DP=54;MQRankSum=1.704;QUALapprox=1626;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183579,54;ReadPosRankSum=-0.121;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:2,49,0:51:99:1626,109,0,1632,147,1670:2,0,22,27 +chrX 3597296 . G . . END=3597346 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,113,1419 +chrX 3597347 . C T, 1594.06 . AS_QUALapprox=|1608|0;AS_VarDP=1|50|0;BaseQRankSum=2.506;DP=51;MQRankSum=-0.503;QUALapprox=1608;RAW_GT_COUNT=0,0,1;RAW_MQandDP=167343,51;ReadPosRankSum=-1.291;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:1,50,0:51:99:1608,142,0,1611,149,1617:0,1,26,24 +chrX 3597348 . G . . END=3597465 GT:DP:GQ:MIN_DP:PL 0/0:38:20:38:0,20,1082 +chrX 3597466 . G A, 460.64 . AS_QUALapprox=|468|0;AS_VarDP=13|16|0;BaseQRankSum=1.179;DP=30;MQRankSum=-1.900;QUALapprox=468;RAW_GT_COUNT=0,1,0;RAW_MQandDP=98139,30;ReadPosRankSum=-1.516;VarDP=29 GT:AD:DP:GQ:PL:SB 0/1:13,16,0:29:99:468,0,354,507,402,909:9,4,6,10 +chrX 3597467 . A . . END=3597477 GT:DP:GQ:MIN_DP:PL 0/0:24:36:21:0,36,540 +chrX 3597478 . CAA C,CAAAAAAAAAAA, 111.60 . AS_QUALapprox=|119|0|0;AS_VarDP=9|6|5|0;BaseQRankSum=1.020;DP=45;MQRankSum=-0.368;QUALapprox=119;RAW_GT_COUNT=0,1,0;RAW_MQandDP=149363,45;ReadPosRankSum=0.669;VarDP=20 GT:AD:DP:GQ:PL:SB 0/1:9,6,5,0:20:99:119,0,661,121,156,588,211,482,507,757:3,6,6,5 +chrX 3597481 . A . . END=3597498 GT:DP:GQ:MIN_DP:PL 0/0:40:81:40:0,81,1215 +chrX 3597499 . A C, 526.64 . AS_QUALapprox=|534|0;AS_VarDP=23|19|0;BaseQRankSum=1.212;DP=44;MQRankSum=1.909;QUALapprox=534;RAW_GT_COUNT=0,1,0;RAW_MQandDP=146962,44;ReadPosRankSum=1.365;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:23,19,0:42:99:534,0,513,602,569,1171:13,10,6,13 +chrX 3597500 . A . . END=3598567 GT:DP:GQ:MIN_DP:PL 0/0:51:20:32:0,20,923 +chrX 3598568 . G . . END=3598569 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,800 +chrX 3598570 . A . . END=3598571 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,111,1665 +chrX 3598572 . C . . END=3598575 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,238 +chrX 3598576 . A . . END=3598576 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,114,1710 +chrX 3598577 . C . . END=3598577 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,103 +chrX 3598578 . T . . END=3598591 GT:DP:GQ:MIN_DP:PL 0/0:40:28:40:0,28,990 +chrX 3598592 . A AAAAG,AAAAAAAAG,AAAAAAAAAG, 895.02 . AS_QUALapprox=|95|652|842|0;AS_VarDP=4|0|7|18|0;BaseQRankSum=1.655;DP=45;MQRankSum=0.000;QUALapprox=912;RAW_GT_COUNT=0,0,1;RAW_MQandDP=157425,45;ReadPosRankSum=0.253;VarDP=29 GT:AD:DP:GQ:PL:SB 2/3:4,0,7,18,0:29:70:912,817,1335,260,372,271,70,197,0,105,747,976,360,186,892:4,0,9,16 +chrX 3598593 . A . . END=3599060 GT:DP:GQ:MIN_DP:PL 0/0:56:76:56:0,76,1287 +chrX 3599061 . G GT, 255.60 . AS_QUALapprox=|263|0;AS_VarDP=23|13|0;BaseQRankSum=0.743;DP=44;MQRankSum=0.000;QUALapprox=263;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=0.973;VarDP=36 GT:AD:DP:GQ:PL:SB 0/1:23,13,0:36:99:263,0,811,332,850,1183:15,8,8,5 +chrX 3599062 . T . . END=3599065 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,108,1620 +chrX 3599066 . T TAA,TTAA, 463.60 . AS_QUALapprox=|471|62|0;AS_VarDP=14|16|0|0;BaseQRankSum=-0.747;DP=51;MQRankSum=0.000;QUALapprox=471;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=1.165;VarDP=30 GT:AD:DP:GQ:PL:SB 0/1:14,16,0,0:30:99:471,0,636,409,414,938,492,588,919,1081:9,5,11,5 +chrX 3599067 . A . . END=3599067 GT:DP:GQ:MIN_DP:PL 0/0:62:0:62:0,0,1667 +chrX 3599068 . A . . END=3599086 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 3599087 . G . . END=3599087 GT:DP:GQ:MIN_DP:PL 0/0:54:0:54:0,0,1329 +chrX 3599088 . A . . END=3599709 GT:DP:GQ:MIN_DP:PL 0/0:57:63:57:0,63,1330 +chrX 3599710 . C T, 941.64 . AS_QUALapprox=|949|0;AS_VarDP=28|36|0;BaseQRankSum=-1.590;DP=64;MQRankSum=0.000;QUALapprox=949;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=0.338;VarDP=64 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,36,0:64:99:0|1:3599710_C_T:949,0,731,1033,839,1872:3599710:12,16,19,17 +chrX 3599711 . A . . END=3599719 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 3599720 . T G, 2489.06 . AS_QUALapprox=|2503|0;AS_VarDP=0|63|0;DP=65;QUALapprox=2503;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=63 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,63,0:63:99:0|1:3599710_C_T:2503,189,0,2503,189,2503:3599710:0,0,32,31 +chrX 3599721 . T . . END=3599894 GT:DP:GQ:MIN_DP:PL 0/0:57:96:57:0,96,1514 +chrX 3599895 . A G, 1980.06 . AS_QUALapprox=|1994|0;AS_VarDP=0|62|0;DP=65;QUALapprox=1994;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:0,62,0:62:99:1994,185,0,1994,185,1994:0,0,34,28 +chrX 3599896 . T . . END=3600334 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 3600335 . C T, 1623.06 . AS_QUALapprox=|1637|0;AS_VarDP=0|49|0;DP=55;QUALapprox=1637;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1637,147,0,1637,147,1637:0,0,23,26 +chrX 3600336 . A . . END=3600418 GT:DP:GQ:MIN_DP:PL 0/0:54:20:50:0,20,1373 +chrX 3600419 . T . . END=3600419 GT:DP:GQ:MIN_DP:PL 0/0:56:15:56:0,15,1529 +chrX 3600420 . G . . END=3600428 GT:DP:GQ:MIN_DP:PL 0/0:56:26:56:0,26,1523 +chrX 3600429 . C . . END=3600429 GT:DP:GQ:MIN_DP:PL 0/0:56:15:56:0,15,1488 +chrX 3600430 . T . . END=3600435 GT:DP:GQ:MIN_DP:PL 0/0:59:41:59:0,41,1678 +chrX 3600436 . G T, 1672.06 . AS_QUALapprox=|1686|0;AS_VarDP=0|51|0;DP=53;QUALapprox=1686;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1686,152,0,1686,152,1686:0,0,24,27 +chrX 3600437 . T . . END=3600512 GT:DP:GQ:MIN_DP:PL 0/0:48:72:48:0,72,1080 +chrX 3600513 . G GTGTAAAGTTTCAGTCA, 1918.03 . AS_QUALapprox=|1932|0;AS_VarDP=0|43|0;DP=50;QUALapprox=1932;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=43 GT:AD:DP:GQ:PL:SB 1/1:0,43,0:43:99:1932,128,0,1934,129,1935:0,0,15,28 +chrX 3600514 . T . . END=3600522 GT:DP:GQ:MIN_DP:PL 0/0:42:90:42:0,90,1350 +chrX 3600523 . A AAAAGTTCTGGAGATCTGCTGGAC, 2088.03 . AS_QUALapprox=|2102|0;AS_VarDP=0|47|0;DP=48;QUALapprox=2102;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:2102,141,0,2102,141,2102:0,0,16,31 +chrX 3600524 . A . . END=3600524 GT:DP:GQ:MIN_DP:PL 0/0:50:0:50:0,0,706 +chrX 3600525 . A . . END=3600526 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 3600527 . A . . END=3600527 GT:DP:GQ:MIN_DP:PL 0/0:53:0:53:0,0,809 +chrX 3600528 . C . . END=3600529 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 3600530 . G . . END=3600535 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,710 +chrX 3600536 . A . . END=3600537 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 3600538 . G . . END=3600541 GT:DP:GQ:MIN_DP:PL 0/0:52:0:52:0,0,943 +chrX 3600542 . A . . END=3600542 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,120,1800 +chrX 3600543 . A . . END=3600546 GT:DP:GQ:MIN_DP:PL 0/0:53:0:53:0,0,931 +chrX 3600547 . T . . END=3600548 GT:DP:GQ:MIN_DP:PL 0/0:73:99:73:0,120,1800 +chrX 3600549 . T . . END=3600550 GT:DP:GQ:MIN_DP:PL 0/0:54:0:54:0,0,1184 +chrX 3600551 . G . . END=3600553 GT:DP:GQ:MIN_DP:PL 0/0:74:99:74:0,120,1800 +chrX 3600554 . T . . END=3600562 GT:DP:GQ:MIN_DP:PL 0/0:63:0:63:0,0,1272 +chrX 3600563 . A . . END=3600564 GT:DP:GQ:MIN_DP:PL 0/0:75:99:75:0,120,1800 +chrX 3600565 . A . . END=3600565 GT:DP:GQ:MIN_DP:PL 0/0:68:0:68:0,0,1487 +chrX 3600566 . A . . END=3600566 GT:DP:GQ:MIN_DP:PL 0/0:74:99:74:0,120,1800 +chrX 3600567 . A . . END=3600576 GT:DP:GQ:MIN_DP:PL 0/0:64:0:64:0,0,1579 +chrX 3600577 . G . . END=3600577 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 3600578 . T . . END=3600579 GT:DP:GQ:MIN_DP:PL 0/0:61:0:61:0,0,1583 +chrX 3600580 . G . . END=3600581 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 3600582 . T . . END=3600588 GT:DP:GQ:MIN_DP:PL 0/0:59:0:59:0,0,1597 +chrX 3600589 . T . . END=3600589 GT:DP:GQ:MIN_DP:PL 0/0:62:33:62:0,33,1818 +chrX 3600590 . T . . END=3600590 GT:DP:GQ:MIN_DP:PL 0/0:63:15:63:0,15,1751 +chrX 3600591 . T . . END=3600592 GT:DP:GQ:MIN_DP:PL 0/0:64:26:63:0,26,1800 +chrX 3600593 . G . . END=3600593 GT:DP:GQ:MIN_DP:PL 0/0:62:0:62:0,0,1628 +chrX 3600594 . G . . END=3601277 GT:DP:GQ:MIN_DP:PL 0/0:61:58:61:0,58,1358 +chrX 3601278 . CT C, 805.03 . AS_QUALapprox=|819|0;AS_VarDP=2|35|0;BaseQRankSum=-0.643;DP=51;MQRankSum=0.000;QUALapprox=819;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;ReadPosRankSum=-1.244;VarDP=37 GT:AD:DP:GQ:PL:SB 1/1:2,35,0:37:78:819,78,0,824,105,851:2,0,18,17 +chrX 3601280 . T . . END=3601856 GT:DP:GQ:MIN_DP:PL 0/0:52:55:52:0,55,1195 +chrX 3601857 . T A,TA, 429.64 . AS_QUALapprox=|437|0|0;AS_VarDP=34|23|0|0;BaseQRankSum=-0.479;DP=68;MQRankSum=0.000;QUALapprox=437;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=0.041;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:34,23,0,0:57:99:437,0,979,572,932,1584,566,1001,1559,1588:19,15,12,11 +chrX 3601858 . T A,TA,TAA, 2124.06 . AS_QUALapprox=|2138|15|117|0;AS_VarDP=0|58|0|0|0;DP=68;QUALapprox=2138;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;VarDP=58 GT:AD:DP:GQ:PL:SB 1/1:0,58,0,0,0:58:99:2138,195,0,2123,193,2261,2021,175,2163,2512,2099,193,2208,2133,2176:0,0,32,26 +chrX 3601859 . A . . END=3602324 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,102,1699 +chrX 3602325 . A G, 651.64 . AS_QUALapprox=|659|0;AS_VarDP=33|27|0;BaseQRankSum=-1.369;DP=62;MQRankSum=0.000;QUALapprox=659;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=-0.171;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:33,27,0:60:99:659,0,911,757,991,1748:13,20,5,22 +chrX 3602326 . T . . END=3602376 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,115,1672 +chrX 3602377 . TA T, 2347.03 . AS_QUALapprox=|2361|0;AS_VarDP=0|57|0;DP=58;QUALapprox=2361;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:2361,172,0,2361,172,2361:0,0,21,36 +chrX 3602379 . A . . END=3602383 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 3602384 . AATTAT A, 1195.60 . AS_QUALapprox=|1203|0;AS_VarDP=25|31|0;BaseQRankSum=-0.608;DP=61;MQRankSum=0.000;QUALapprox=1203;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-0.750;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:25,31,0:56:99:1203,0,956,1278,1050,2328:7,18,15,16 +chrX 3602390 . A . . END=3603836 GT:DP:GQ:MIN_DP:PL 0/0:55:98:55:0,98,1276 +chrX 3603837 . C T, 826.64 . AS_QUALapprox=|834|0;AS_VarDP=24|32|0;BaseQRankSum=-1.457;DP=62;MQRankSum=0.000;QUALapprox=834;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=-1.325;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:24,32,0:56:99:834,0,626,906,722,1628:10,14,13,19 +chrX 3603838 . G . . END=3604130 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,102,1226 +chrX 3604131 . G C, 1544.06 . AS_QUALapprox=|1558|0;AS_VarDP=0|47|0;DP=48;QUALapprox=1558;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1558,141,0,1558,141,1558:0,0,25,22 +chrX 3604132 . A . . END=3605011 GT:DP:GQ:MIN_DP:PL 0/0:40:39:39:0,39,1078 +chrX 3605012 . GACACACACAC G, 438.60 . AS_QUALapprox=|446|0;AS_VarDP=13|12|0;BaseQRankSum=2.287;DP=37;MQRankSum=-3.974;QUALapprox=446;RAW_GT_COUNT=0,1,0;RAW_MQandDP=112090,37;ReadPosRankSum=-0.985;VarDP=25 GT:AD:DP:GQ:PL:SB 0/1:13,12,0:25:99:446,0,507,485,544,1029:8,5,8,4 +chrX 3605023 . A . . END=3606267 GT:DP:GQ:MIN_DP:PL 0/0:58:84:58:0,84,1142 +chrX 3606268 . T C, 2112.06 . AS_QUALapprox=|2126|0;AS_VarDP=0|69|0;DP=71;QUALapprox=2126;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;VarDP=69 GT:AD:DP:GQ:PL:SB 1/1:0,69,0:69:99:2126,206,0,2126,206,2126:0,0,39,30 +chrX 3606269 . G . . END=3606451 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 3606452 . T C, 2065.06 . AS_QUALapprox=|2079|0;AS_VarDP=0|65|0;DP=66;QUALapprox=2079;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=65 GT:AD:DP:GQ:PL:SB 1/1:0,65,0:65:99:2079,194,0,2079,194,2079:0,0,31,34 +chrX 3606453 . A . . END=3606561 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 3606562 . T C, 1896.06 . AS_QUALapprox=|1910|0;AS_VarDP=0|59|0;DP=62;QUALapprox=1910;RAW_GT_COUNT=0,0,1;RAW_MQandDP=221449,62;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1910,177,0,1910,177,1910:0,0,22,37 +chrX 3606563 . G . . END=3606695 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,103,1647 +chrX 3606696 . TAC T, 2474.03 . AS_QUALapprox=|2488|0;AS_VarDP=0|56|0;DP=57;QUALapprox=2488;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:2488,169,0,2488,169,2488:0,0,26,30 +chrX 3606699 . A . . END=3607899 GT:DP:GQ:MIN_DP:PL 0/0:44:34:36:0,34,945 +chrX 3607900 . G . . END=3607900 GT:DP:GQ:MIN_DP:PL 0/0:44:9:44:0,9,597 +chrX 3607901 . G . . END=3608577 GT:DP:GQ:MIN_DP:PL 0/0:49:41:49:0,41,733 +chrX 3608578 . TACACACACACACACACAC T,TAC, 1801.03 . AS_QUALapprox=|528|1815|0;AS_VarDP=0|3|40|0;DP=51;QUALapprox=1815;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=43 GT:AD:DP:GQ:PL:SB 2/2:0,3,40,0:43:35:1815,1345,1287,130,35,0,1659,1349,133,1601:0,0,30,13 +chrX 3608597 . A . . END=3608607 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 3608608 . C . . END=3608617 GT:DP:GQ:MIN_DP:PL 0/0:54:0:54:0,0,1300 +chrX 3608618 . C . . END=3610672 GT:DP:GQ:MIN_DP:PL 0/0:57:29:56:0,29,1326 +chrX 3610673 . G C, 867.64 . AS_QUALapprox=|875|0;AS_VarDP=19|32|0;BaseQRankSum=-0.380;DP=52;MQRankSum=0.000;QUALapprox=875;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=-0.838;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:19,32,0:51:99:875,0,448,931,544,1475:7,12,22,10 +chrX 3610674 . A . . END=3611875 GT:DP:GQ:MIN_DP:PL 0/0:55:95:55:0,95,1330 +chrX 3611876 . G A, 1921.06 . AS_QUALapprox=|1935|0;AS_VarDP=0|43|0;DP=43;QUALapprox=1935;RAW_GT_COUNT=0,0,1;RAW_MQandDP=121170,43;VarDP=43 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,43,0:43:99:0|1:3611876_G_A:1935,129,0,1935,129,1935:3611876:0,0,21,22 +chrX 3611877 . G . . END=3611883 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,120,1800 +chrX 3611884 . A G, 2001.06 . AS_QUALapprox=|2015|0;AS_VarDP=0|45|0;DP=45;QUALapprox=2015;RAW_GT_COUNT=0,0,1;RAW_MQandDP=128370,45;VarDP=45 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,45,0:45:99:0|1:3611876_G_A:2015,135,0,2015,135,2015:3611876:0,0,22,23 +chrX 3611885 . A . . END=3611887 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,120,1800 +chrX 3611888 . A G, 2001.06 . AS_QUALapprox=|2015|0;AS_VarDP=0|45|0;DP=46;QUALapprox=2015;RAW_GT_COUNT=0,0,1;RAW_MQandDP=131970,46;VarDP=45 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,45,0:45:99:0|1:3611876_G_A:2015,135,0,2015,135,2015:3611876:0,0,22,23 +chrX 3611889 . T . . END=3611927 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,120,1800 +chrX 3611928 . A G, 1489.06 . AS_QUALapprox=|1503|0;AS_VarDP=0|48|0;DP=49;QUALapprox=1503;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154844,49;VarDP=48 GT:AD:DP:GQ:PL:SB 1/1:0,48,0:48:99:1503,144,0,1503,144,1503:0,0,23,25 +chrX 3611929 . T . . END=3611940 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,115,1375 +chrX 3611941 . T C, 1320.06 . AS_QUALapprox=|1334|0;AS_VarDP=0|43|0;DP=46;QUALapprox=1334;RAW_GT_COUNT=0,0,1;RAW_MQandDP=150044,46;VarDP=43 GT:AD:DP:GQ:PL:SB 1/1:0,43,0:43:99:1334,128,0,1334,128,1334:0,0,20,23 +chrX 3611942 . G . . END=3612152 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1539 +chrX 3612153 . G T, 1807.06 . AS_QUALapprox=|1821|0;AS_VarDP=0|57|0;DP=62;QUALapprox=1821;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1821,170,0,1821,170,1821:0,0,23,34 +chrX 3612154 . A . . END=3612333 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 3612334 . C T, 479.64 . AS_QUALapprox=|487|0;AS_VarDP=29|19|0;BaseQRankSum=0.482;DP=50;MQRankSum=0.000;QUALapprox=487;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=-0.158;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:29,19,0:48:99:487,0,789,573,846,1419:13,16,11,8 +chrX 3612335 . A . . END=3612470 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,110,1475 +chrX 3612471 . A C, 1693.06 . AS_QUALapprox=|1707|0;AS_VarDP=0|51|0;DP=52;QUALapprox=1707;RAW_GT_COUNT=0,0,1;RAW_MQandDP=184969,52;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1707,153,0,1707,153,1707:0,0,30,21 +chrX 3612472 . G . . END=3612696 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 3612697 . A G, 1885.06 . AS_QUALapprox=|1899|0;AS_VarDP=0|58|0;DP=60;QUALapprox=1899;RAW_GT_COUNT=0,0,1;RAW_MQandDP=214249,60;VarDP=58 GT:AD:DP:GQ:PL:SB 1/1:0,58,0:58:99:1899,174,0,1899,174,1899:0,0,23,35 +chrX 3612698 . A . . END=3612747 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 3612748 . C G, 1971.06 . AS_QUALapprox=|1985|0;AS_VarDP=0|59|0;DP=61;QUALapprox=1985;RAW_GT_COUNT=0,0,1;RAW_MQandDP=217849,61;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1985,177,0,1985,177,1985:0,0,25,34 +chrX 3612749 . T . . END=3613149 GT:DP:GQ:MIN_DP:PL 0/0:64:46:64:0,46,987 +chrX 3613150 . CAAAAAAAAAAAAAAAAAAAAAAA C, 1107.03 . AS_QUALapprox=|1121|0;AS_VarDP=2|26|0;DP=44;MQRankSum=0.000;QUALapprox=1121;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158400,44;VarDP=28 GT:AD:DP:GQ:PL:SB 1/1:2,26,0:28:42:1121,42,0,1127,81,1166:0,2,15,11 +chrX 3613174 . A . . END=3613853 GT:DP:GQ:MIN_DP:PL 0/0:61:51:61:0,51,1171 +chrX 3613854 . CAAAAAAA C, 816.70 . AS_QUALapprox=|829|0;AS_VarDP=3|23|0;DP=53;MQRankSum=-0.241;QUALapprox=829;RAW_GT_COUNT=0,0,1;RAW_MQandDP=188800,53;VarDP=26 GT:AD:DP:GQ:PL:SB 1/1:3,23,0:26:7:829,7,0,837,70,900:0,3,15,8 +chrX 3613862 . A . . END=3614082 GT:DP:GQ:MIN_DP:PL 0/0:67:98:67:0,98,1639 +chrX 3614083 . T C, 2351.06 . AS_QUALapprox=|2365|0;AS_VarDP=0|76|0;DP=79;QUALapprox=2365;RAW_GT_COUNT=0,0,1;RAW_MQandDP=280645,79;VarDP=76 GT:AD:DP:GQ:PL:SB 1/1:0,76,0:76:99:2365,226,0,2365,226,2365:0,0,33,43 +chrX 3614084 . G . . END=3614225 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,120,1800 +chrX 3614226 . A G, 2113.06 . AS_QUALapprox=|2127|0;AS_VarDP=0|67|0;DP=70;QUALapprox=2127;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;VarDP=67 GT:AD:DP:GQ:PL:SB 1/1:0,67,0:67:99:2127,200,0,2127,200,2127:0,0,32,35 +chrX 3614227 . G . . END=3614833 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 3614834 . T G, 1524.06 . AS_QUALapprox=|1538|0;AS_VarDP=0|47|0;DP=48;QUALapprox=1538;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1538,141,0,1538,141,1538:0,0,27,20 +chrX 3614835 . G . . END=3615008 GT:DP:GQ:MIN_DP:PL 0/0:51:23:47:0,23,1206 +chrX 3615009 . A . . END=3615009 GT:DP:GQ:MIN_DP:PL 0/0:59:0:59:0,0,1335 +chrX 3615010 . G . . END=3615010 GT:DP:GQ:MIN_DP:PL 0/0:44:21:44:0,21,764 +chrX 3615011 . A ATTT,T, 930.03 . AS_QUALapprox=|944|423|0;AS_VarDP=0|22|4|0;DP=44;QUALapprox=944;RAW_GT_COUNT=0,0,1;RAW_MQandDP=149876,44;VarDP=26 GT:AD:DP:GQ:PL:SB 1/1:0,22,4,0:26:21:944,86,0,521,21,763,813,115,681,898:0,0,14,12 +chrX 3615012 . T . . END=3615036 GT:DP:GQ:MIN_DP:PL 0/0:42:45:42:0,45,675 +chrX 3615037 . G . . END=3615037 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,765 +chrX 3615038 . A . . END=3615053 GT:DP:GQ:MIN_DP:PL 0/0:31:75:31:0,75,859 +chrX 3615054 . T C, 1048.06 . AS_QUALapprox=|1062|0;AS_VarDP=0|33|0;DP=35;QUALapprox=1062;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122249,35;VarDP=33 GT:AD:DP:GQ:PL:SB 1/1:0,33,0:33:99:1062,99,0,1062,99,1062:0,0,10,23 +chrX 3615055 . G . . END=3615402 GT:DP:GQ:MIN_DP:PL 0/0:46:92:46:0,92,1160 +chrX 3615403 . C T, 1673.06 . AS_QUALapprox=|1687|0;AS_VarDP=0|52|0;DP=55;QUALapprox=1687;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1687,156,0,1687,156,1687:0,0,27,25 +chrX 3615404 . G . . END=3615920 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,119,1748 +chrX 3615921 . T C, 1851.06 . AS_QUALapprox=|1865|0;AS_VarDP=0|60|0;DP=60;QUALapprox=1865;RAW_GT_COUNT=0,0,1;RAW_MQandDP=210336,60;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:1865,179,0,1865,179,1865:0,0,32,28 +chrX 3615922 . G . . END=3616416 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 3616417 . G A, 1895.06 . AS_QUALapprox=|1909|0;AS_VarDP=0|58|0;DP=60;QUALapprox=1909;RAW_GT_COUNT=0,0,1;RAW_MQandDP=127831,60;VarDP=58 GT:AD:DP:GQ:PL:SB 1/1:0,58,0:58:99:1909,174,0,1909,174,1909:0,0,26,32 +chrX 3616418 . G . . END=3617160 GT:DP:GQ:MIN_DP:PL 0/0:61:92:61:0,92,1509 +chrX 3617161 . T TAC, 2437.03 . AS_QUALapprox=|2451|0;AS_VarDP=0|58|0;DP=64;QUALapprox=2451;RAW_GT_COUNT=0,0,1;RAW_MQandDP=228096,64;VarDP=58 GT:AD:DP:GQ:PL:SB 1/1:0,58,0:58:99:2451,174,0,2451,175,2451:0,0,27,31 +chrX 3617162 . A . . END=3618049 GT:DP:GQ:MIN_DP:PL 0/0:51:66:51:0,66,1007 +chrX 3618050 . C . . END=3618050 GT:DP:GQ:MIN_DP:PL 0/0:29:0:29:0,0,719 +chrX 3618051 . A . . END=3618067 GT:DP:GQ:MIN_DP:PL 0/0:48:54:48:0,54,810 +chrX 3618068 . AG A, 511.05 . AS_QUALapprox=|1053|0;AS_VarDP=0|34|0;DP=50;QUALapprox=1053;RAW_GT_COUNT=0,0,1;RAW_MQandDP=174897,50;VarDP=34 GT:AD:DP:GQ:PL:SB 1/1:0,34,0:34:99:1053,102,0,821,136,844:0,0,4,14 +chrX 3618070 . A . . END=3618469 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,99,1420 +chrX 3618470 . T TAAGAG, 2585.03 . AS_QUALapprox=|2599|0;AS_VarDP=0|58|0;DP=60;QUALapprox=2599;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=58 GT:AD:DP:GQ:PL:SB 1/1:0,58,0:58:99:2599,175,0,2599,175,2599:0,0,25,33 +chrX 3618471 . T . . END=3618502 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 3618503 . G T, 861.64 . AS_QUALapprox=|869|0;AS_VarDP=23|33|0;BaseQRankSum=0.452;DP=58;MQRankSum=0.000;QUALapprox=869;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-0.791;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:23,33,0:56:99:869,0,547,938,645,1583:10,13,12,21 +chrX 3618504 . T . . END=3621334 GT:DP:GQ:MIN_DP:PL 0/0:57:61:57:0,61,1067 +chrX 3621335 . C . . END=3621335 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,1018 +chrX 3621336 . A . . END=3622485 GT:DP:GQ:MIN_DP:PL 0/0:60:74:60:0,74,1488 +chrX 3622486 . A G, 1389.06 . AS_QUALapprox=|1403|0;AS_VarDP=0|46|0;DP=51;QUALapprox=1403;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1403,137,0,1403,137,1403:0,0,25,21 +chrX 3622487 . G . . END=3622832 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,102,1261 +chrX 3622833 . C A, 1404.06 . AS_QUALapprox=|1418|0;AS_VarDP=0|43|0;DP=45;QUALapprox=1418;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162000,45;VarDP=43 GT:AD:DP:GQ:PL:SB 1/1:0,43,0:43:99:1418,129,0,1418,129,1418:0,0,25,18 +chrX 3622834 . C . . END=3623093 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,103,1409 +chrX 3623094 . GA G, 1137.03 . AS_QUALapprox=|1151|0;AS_VarDP=0|37|0;DP=44;QUALapprox=1151;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158400,44;VarDP=37 GT:AD:DP:GQ:PL:SB 1/1:0,37,0:37:99:1151,111,0,1151,111,1151:0,0,20,17 +chrX 3623096 . A . . END=3625045 GT:DP:GQ:MIN_DP:PL 0/0:58:51:58:0,51,1274 +chrX 3625046 . G A, 677.64 . AS_QUALapprox=|685|0;AS_VarDP=28|25|0;BaseQRankSum=2.035;DP=58;MQRankSum=-1.021;QUALapprox=685;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208564,58;ReadPosRankSum=-0.107;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:28,25,0:53:99:685,0,728,769,803,1572:15,13,14,11 +chrX 3625047 . G . . END=3626307 GT:DP:GQ:MIN_DP:PL 0/0:60:82:60:0,82,1553 +chrX 3626308 . G A, 736.64 . AS_QUALapprox=|744|0;AS_VarDP=22|28|0;BaseQRankSum=0.452;DP=53;MQRankSum=-1.976;QUALapprox=744;RAW_GT_COUNT=0,1,0;RAW_MQandDP=126580,53;ReadPosRankSum=-0.372;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:22,28,0:50:99:744,0,515,809,599,1408:12,10,15,13 +chrX 3626309 . C . . END=3627362 GT:DP:GQ:MIN_DP:PL 0/0:54:81:54:0,81,1003 +chrX 3627363 . C . . END=3627363 GT:DP:GQ:MIN_DP:PL 0/0:32:11:32:0,11,802 +chrX 3627364 . A . . END=3627390 GT:DP:GQ:MIN_DP:PL 0/0:36:34:34:0,34,893 +chrX 3627391 . T . . END=3627391 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,753 +chrX 3627392 . T . . END=3630284 GT:DP:GQ:MIN_DP:PL 0/0:60:45:60:0,45,994 +chrX 3630285 . C T, 3422.06 . AS_QUALapprox=|3436|0;AS_VarDP=0|78|0;DP=80;QUALapprox=3436;RAW_GT_COUNT=0,0,1;RAW_MQandDP=260735,80;VarDP=78 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,78,0:78:99:0|1:3630285_C_T:3436,235,0,3436,235,3436:3630285:0,0,37,41 +chrX 3630286 . G . . END=3630296 GT:DP:GQ:MIN_DP:PL 0/0:77:99:77:0,120,1800 +chrX 3630297 . T C, 3378.06 . AS_QUALapprox=|3392|0;AS_VarDP=0|77|0;DP=79;QUALapprox=3392;RAW_GT_COUNT=0,0,1;RAW_MQandDP=253135,79;VarDP=77 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,77,0:77:99:0|1:3630285_C_T:3392,232,0,3392,232,3392:3630285:0,0,38,39 +chrX 3630298 . G . . END=3630346 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 3630347 . CA C, 2323.03 . AS_QUALapprox=|2337|0;AS_VarDP=0|64|0;DP=66;QUALapprox=2337;RAW_GT_COUNT=0,0,1;RAW_MQandDP=181953,66;VarDP=64 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:2337,192,0,2337,192,2337:0,0,25,39 +chrX 3630349 . A . . END=3630395 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 3630396 . C T, 2006.06 . AS_QUALapprox=|2020|0;AS_VarDP=0|60|0;DP=63;QUALapprox=2020;RAW_GT_COUNT=0,0,1;RAW_MQandDP=166737,63;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:2020,180,0,2020,180,2020:0,0,26,34 +chrX 3630397 . A . . END=3630430 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 3630431 . G A, 2495.06 . AS_QUALapprox=|2509|0;AS_VarDP=0|56|0;DP=56;QUALapprox=2509;RAW_GT_COUNT=0,0,1;RAW_MQandDP=164108,56;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,56,0:56:99:0|1:3630431_G_A:2509,169,0,2509,169,2509:3630431:0,0,20,36 +chrX 3630432 . C A, 2495.06 . AS_QUALapprox=|2509|0;AS_VarDP=0|56|0;DP=58;QUALapprox=2509;RAW_GT_COUNT=0,0,1;RAW_MQandDP=171308,58;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,56,0:56:99:0|1:3630431_G_A:2509,169,0,2509,169,2509:3630431:0,0,20,36 +chrX 3630433 . G . . END=3630468 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 3630469 . G A, 1788.06 . AS_QUALapprox=|1802|0;AS_VarDP=0|53|0;DP=56;QUALapprox=1802;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172108,56;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1802,159,0,1802,159,1802:0,0,20,33 +chrX 3630470 . G . . END=3630528 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 3630529 . C G, 1753.06 . AS_QUALapprox=|1767|0;AS_VarDP=0|53|0;DP=56;QUALapprox=1767;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201362,56;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1767,159,0,1767,159,1767:0,0,21,32 +chrX 3630530 . A . . END=3630709 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 3630710 . G C, 712.64 . AS_QUALapprox=|720|0;AS_VarDP=35|26|0;BaseQRankSum=3.308;DP=62;MQRankSum=0.000;QUALapprox=720;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=0.445;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:35,26,0:61:99:720,0,897,825,975,1800:17,18,12,14 +chrX 3630711 . A . . END=3632462 GT:DP:GQ:MIN_DP:PL 0/0:56:73:56:0,73,1290 +chrX 3632463 . C CCCTGTCTGAATACAT, 1248.60 . AS_QUALapprox=|1256|0;AS_VarDP=15|31|0;BaseQRankSum=0.832;DP=48;MQRankSum=-3.153;QUALapprox=1256;RAW_GT_COUNT=0,1,0;RAW_MQandDP=148720,48;ReadPosRankSum=1.418;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:15,31,0:46:99:1256,0,526,1302,620,1921:8,7,17,14 +chrX 3632464 . T . . END=3633413 GT:DP:GQ:MIN_DP:PL 0/0:49:26:45:0,26,1061 +chrX 3633414 . A C, 679.64 . AS_QUALapprox=|687|0;AS_VarDP=30|19|0;BaseQRankSum=-0.583;DP=52;MQRankSum=0.000;QUALapprox=687;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=-0.922;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:30,19,0:49:99:0|1:3633414_A_C:687,0,1128,777,1185,1962:3633414:18,12,9,10 +chrX 3633415 . T . . END=3633423 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,120,1800 +chrX 3633424 . T C, 812.64 . AS_QUALapprox=|820|0;AS_VarDP=28|23|0;BaseQRankSum=-0.947;DP=52;MQRankSum=0.000;QUALapprox=820;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=-2.320;VarDP=51 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,23,0:51:99:0|1:3633414_A_C:820,0,1053,904,1122,2026:3633414:17,11,9,14 +chrX 3633425 . A . . END=3634024 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,103,1390 +chrX 3634025 . T G, 832.64 . AS_QUALapprox=|840|0;AS_VarDP=28|31|0;BaseQRankSum=0.591;DP=60;MQRankSum=0.000;QUALapprox=840;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=-0.106;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:28,31,0:59:99:840,0,711,924,804,1728:16,12,18,13 +chrX 3634026 . A . . END=3634772 GT:DP:GQ:MIN_DP:PL 0/0:57:57:57:0,57,1272 +chrX 3634773 . G C, 754.64 . AS_QUALapprox=|762|0;AS_VarDP=32|30|0;BaseQRankSum=1.332;DP=63;MQRankSum=0.000;QUALapprox=762;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=-0.832;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:32,30,0:62:99:762,0,771,858,861,1719:12,20,13,17 +chrX 3634774 . T . . END=3634979 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 3634980 . A G, 1010.64 . AS_QUALapprox=|1018|0;AS_VarDP=29|40|0;BaseQRankSum=-0.905;DP=72;MQRankSum=0.000;QUALapprox=1018;RAW_GT_COUNT=0,1,0;RAW_MQandDP=259200,72;ReadPosRankSum=0.827;VarDP=69 GT:AD:DP:GQ:PL:SB 0/1:29,40,0:69:99:1018,0,721,1105,841,1946:16,13,20,20 +chrX 3634981 . G . . END=3635874 GT:DP:GQ:MIN_DP:PL 0/0:66:97:66:0,97,1662 +chrX 3635875 . A G, 806.64 . AS_QUALapprox=|814|0;AS_VarDP=40|31|0;BaseQRankSum=0.205;DP=73;MQRankSum=0.000;QUALapprox=814;RAW_GT_COUNT=0,1,0;RAW_MQandDP=262800,73;ReadPosRankSum=-0.603;VarDP=71 GT:AD:DP:GQ:PL:SB 0/1:40,31,0:71:99:814,0,1092,934,1185,2119:18,22,13,18 +chrX 3635876 . C . . END=3637014 GT:DP:GQ:MIN_DP:PL 0/0:61:74:61:0,74,1151 +chrX 3637015 . G C, 483.64 . AS_QUALapprox=|491|0;AS_VarDP=15|18|0;BaseQRankSum=-1.267;DP=36;MQRankSum=0.000;QUALapprox=491;RAW_GT_COUNT=0,1,0;RAW_MQandDP=129600,36;ReadPosRankSum=-1.050;VarDP=33 GT:AD:DP:GQ:PL:SB 0/1:15,18,0:33:99:491,0,423,536,476,1012:11,4,11,7 +chrX 3637016 . G . . END=3637260 GT:DP:GQ:MIN_DP:PL 0/0:50:64:50:0,64,946 +chrX 3637261 . A G, 813.64 . AS_QUALapprox=|821|0;AS_VarDP=24|30|0;BaseQRankSum=0.739;DP=58;MQRankSum=0.000;QUALapprox=821;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-0.636;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:24,30,0:54:99:821,0,604,893,694,1587:15,9,15,15 +chrX 3637262 . G . . END=3637481 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,107,1379 +chrX 3637482 . C G, 910.64 . AS_QUALapprox=|918|0;AS_VarDP=23|24|0;BaseQRankSum=1.584;DP=49;MQRankSum=0.000;QUALapprox=918;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=0.586;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,24,0:47:99:0|1:3637482_C_G:918,0,862,987,934,1922:3637482:10,13,14,10 +chrX 3637483 . A . . END=3637490 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,120,1800 +chrX 3637491 . T C, 1001.64 . AS_QUALapprox=|1009|0;AS_VarDP=23|28|0;BaseQRankSum=-0.095;DP=54;MQRankSum=0.000;QUALapprox=1009;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=-0.506;VarDP=51 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,28,0:51:99:0|1:3637482_C_G:1009,0,850,1079,934,2013:3637482:9,14,16,12 +chrX 3637492 . G . . END=3637612 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 3637613 . A G, 645.64 . AS_QUALapprox=|653|0;AS_VarDP=28|29|0;BaseQRankSum=-1.855;DP=59;MQRankSum=0.000;QUALapprox=653;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=0.176;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:28,29,0:57:99:653,0,699,736,785,1521:8,20,14,15 +chrX 3637614 . C . . END=3637728 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 3637729 . G A, 864.64 . AS_QUALapprox=|872|0;AS_VarDP=21|32|0;BaseQRankSum=-1.887;DP=53;MQRankSum=0.000;QUALapprox=872;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=0.027;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:21,32,0:53:99:872,0,561,935,657,1592:11,10,12,20 +chrX 3637730 . G . . END=3637762 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 3637763 . CT C, 365.60 . AS_QUALapprox=|373|0;AS_VarDP=19|20|0;BaseQRankSum=-1.141;DP=54;MQRankSum=0.000;QUALapprox=373;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=0.872;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:19,20,0:39:99:373,0,416,429,476,905:13,6,7,13 +chrX 3637765 . T . . END=3637777 GT:DP:GQ:MIN_DP:PL 0/0:49:87:49:0,87,1305 +chrX 3637778 . C . . END=3637778 GT:DP:GQ:MIN_DP:PL 0/0:59:5:59:0,5,1439 +chrX 3637779 . T . . END=3637823 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,114,1200 +chrX 3637824 . T C, 713.64 . AS_QUALapprox=|721|0;AS_VarDP=25|19|0;BaseQRankSum=0.535;DP=45;MQRankSum=0.000;QUALapprox=721;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=-0.294;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,19,0:44:99:0|1:3637824_T_C:721,0,961,796,1019,1815:3637824:15,10,10,9 +chrX 3637825 . G . . END=3637842 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,120,1800 +chrX 3637843 . C T, 758.64 . AS_QUALapprox=|766|0;AS_VarDP=28|21|0;BaseQRankSum=1.278;DP=51;MQRankSum=0.000;QUALapprox=766;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-0.384;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,21,0:49:99:0|1:3637824_T_C:766,0,1031,850,1094,1944:3637824:15,13,11,10 +chrX 3637844 . G . . END=3637893 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 3637894 . G A, 392.64 . AS_QUALapprox=|400|0;AS_VarDP=36|16|0;BaseQRankSum=2.329;DP=54;MQRankSum=0.000;QUALapprox=400;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=-0.705;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:36,16,0:52:99:400,0,964,507,1012,1519:16,20,10,6 +chrX 3637895 . A . . END=3638239 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,104,1668 +chrX 3638240 . T G, 866.64 . AS_QUALapprox=|874|0;AS_VarDP=23|31|0;BaseQRankSum=0.030;DP=57;MQRankSum=0.000;QUALapprox=874;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=0.149;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:23,31,0:54:99:874,0,615,943,708,1651:12,11,15,16 +chrX 3638241 . T . . END=3638283 GT:DP:GQ:MIN_DP:PL 0/0:48:83:48:0,83,1303 +chrX 3638284 . T TTC, 936.60 . AS_QUALapprox=|944|0;AS_VarDP=20|25|0;BaseQRankSum=-0.476;DP=46;MQRankSum=0.000;QUALapprox=944;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=-0.663;VarDP=45 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:20,25,0:45:99:0|1:3638284_T_TTC:944,0,765,1004,840,1844:3638284:11,9,14,11 +chrX 3638285 . T . . END=3638292 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,120,1800 +chrX 3638293 . C T, 1033.64 . AS_QUALapprox=|1041|0;AS_VarDP=17|26|0;BaseQRankSum=0.598;DP=44;MQRankSum=0.000;QUALapprox=1041;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=-1.591;VarDP=43 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:17,26,0:43:99:0|1:3638284_T_TTC:1041,0,636,1092,714,1806:3638284:9,8,13,13 +chrX 3638294 . T . . END=3638305 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,120,1800 +chrX 3638306 . G A, 988.64 . AS_QUALapprox=|996|0;AS_VarDP=18|25|0;BaseQRankSum=1.409;DP=43;MQRankSum=0.000;QUALapprox=996;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154800,43;ReadPosRankSum=-1.154;VarDP=43 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:18,25,0:43:99:0|1:3638284_T_TTC:996,0,670,1050,746,1795:3638284:9,9,12,13 +chrX 3638307 . T . . END=3638520 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,108,1440 +chrX 3638521 . G A, 804.64 . AS_QUALapprox=|812|0;AS_VarDP=19|28|0;BaseQRankSum=0.954;DP=49;MQRankSum=0.000;QUALapprox=812;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=0.022;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:19,28,0:47:99:812,0,489,869,573,1442:6,13,12,16 +chrX 3638522 . C . . END=3638865 GT:DP:GQ:MIN_DP:PL 0/0:35:40:35:0,40,780 +chrX 3638866 . C G, 375.64 . AS_QUALapprox=|383|0;AS_VarDP=16|15|0;BaseQRankSum=0.672;DP=36;MQRankSum=0.000;QUALapprox=383;RAW_GT_COUNT=0,1,0;RAW_MQandDP=129600,36;ReadPosRankSum=1.246;VarDP=31 GT:AD:DP:GQ:PL:SB 0/1:16,15,0:31:99:383,0,408,432,452,884:7,9,6,9 +chrX 3638867 . A . . END=3638950 GT:DP:GQ:MIN_DP:PL 0/0:35:52:35:0,52,800 +chrX 3638951 . G A, 331.64 . AS_QUALapprox=|339|0;AS_VarDP=14|12|0;BaseQRankSum=1.391;DP=38;MQRankSum=0.000;QUALapprox=339;RAW_GT_COUNT=0,1,0;RAW_MQandDP=136800,38;ReadPosRankSum=1.133;VarDP=26 GT:AD:DP:GQ:PL:SB 0/1:14,12,0:26:99:339,0,374,381,410,791:3,11,4,8 +chrX 3638952 . C . . END=3639087 GT:DP:GQ:MIN_DP:PL 0/0:12:24:10:0,24,303 +chrX 3639088 . T . . END=3639088 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,303 +chrX 3639089 . A . . END=3639092 GT:DP:GQ:MIN_DP:PL 0/0:12:30:12:0,30,450 +chrX 3639093 . A . . END=3639093 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,348 +chrX 3639094 . G . . END=3639096 GT:DP:GQ:MIN_DP:PL 0/0:14:36:14:0,36,540 +chrX 3639097 . A . . END=3639099 GT:DP:GQ:MIN_DP:PL 0/0:13:0:13:0,0,219 +chrX 3639100 . G . . END=3639101 GT:DP:GQ:MIN_DP:PL 0/0:15:39:15:0,39,585 +chrX 3639102 . T . . END=3639102 GT:DP:GQ:MIN_DP:PL 0/0:15:0:15:0,0,154 +chrX 3639103 . G . . END=3639103 GT:DP:GQ:MIN_DP:PL 0/0:16:39:16:0,39,585 +chrX 3639104 . T TGTGG, 243.97 . AS_QUALapprox=|258|0;AS_VarDP=0|7|0;DP=31;QUALapprox=258;RAW_GT_COUNT=0,0,1;RAW_MQandDP=109521,31;VarDP=7 GT:AD:DP:GQ:PL:SB 1/1:0,7,0:7:20:258,20,0,259,21,259:0,0,7,0 +chrX 3639105 . G . . END=3639105 GT:DP:GQ:MIN_DP:PL 0/0:15:30:15:0,30,450 +chrX 3639106 . T . . END=3639106 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,129 +chrX 3639107 . G . . END=3639109 GT:DP:GQ:MIN_DP:PL 0/0:15:30:15:0,30,450 +chrX 3639110 . T . . END=3639110 GT:DP:GQ:MIN_DP:PL 0/0:15:0:15:0,0,164 +chrX 3639111 . G . . END=3639113 GT:DP:GQ:MIN_DP:PL 0/0:15:30:15:0,30,450 +chrX 3639114 . T . . END=3639114 GT:DP:GQ:MIN_DP:PL 0/0:13:0:13:0,0,134 +chrX 3639115 . G . . END=3639117 GT:DP:GQ:MIN_DP:PL 0/0:14:30:14:0,30,450 +chrX 3639118 . T . . END=3639118 GT:DP:GQ:MIN_DP:PL 0/0:13:0:13:0,0,94 +chrX 3639119 . G . . END=3639120 GT:DP:GQ:MIN_DP:PL 0/0:13:30:13:0,30,450 +chrX 3639121 . G . . END=3639121 GT:DP:GQ:MIN_DP:PL 0/0:11:8:11:0,8,293 +chrX 3639122 . T . . END=3639124 GT:DP:GQ:MIN_DP:PL 0/0:12:30:12:0,30,450 +chrX 3639125 . A . . END=3639126 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,178 +chrX 3639127 . G . . END=3639141 GT:DP:GQ:MIN_DP:PL 0/0:12:30:12:0,30,387 +chrX 3639142 . A . . END=3639142 GT:DP:GQ:MIN_DP:PL 0/0:12:1:12:0,1,317 +chrX 3639143 . G . . END=3639143 GT:DP:GQ:MIN_DP:PL 0/0:13:36:13:0,36,540 +chrX 3639144 . G . . END=3639146 GT:DP:GQ:MIN_DP:PL 0/0:13:0:13:0,0,283 +chrX 3639147 . G . . END=3639152 GT:DP:GQ:MIN_DP:PL 0/0:15:31:15:0,31,412 +chrX 3639153 . A . . END=3639153 GT:DP:GQ:MIN_DP:PL 0/0:17:0:17:0,0,342 +chrX 3639154 . T . . END=3639156 GT:DP:GQ:MIN_DP:PL 0/0:17:39:17:0,39,585 +chrX 3639157 . A . . END=3639157 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,268 +chrX 3639158 . T . . END=3639160 GT:DP:GQ:MIN_DP:PL 0/0:16:34:16:0,34,487 +chrX 3639161 . A . . END=3639161 GT:DP:GQ:MIN_DP:PL 0/0:14:17:14:0,17,397 +chrX 3639162 . T . . END=3639233 GT:DP:GQ:MIN_DP:PL 0/0:12:20:8:0,20,213 +chrX 3639234 . T . . END=3639234 GT:DP:GQ:MIN_DP:PL 0/0:5:15:5:0,15,144 +chrX 3639235 . GGATGGATGAAGGGGTAGGTGGGTGGATGGATGGATGGATGGATGGATGAAGGGGTGGGGGGGTCGGGGGGTGGATGGATGAAGGGGTGGGGTGGTAGATGGATGAAGGGGTGGGGGTGGATGGATGAAGGGGTGGGGTGGTA G, 330.62 . AS_QUALapprox=|338|0;AS_VarDP=1|11|0;DP=27;MQRankSum=-0.223;QUALapprox=338;RAW_GT_COUNT=0,1,0;RAW_MQandDP=85959,27;VarDP=12 GT:AD:DP:GQ:PL:SB 0/1:1,11,0:12:14:338,0,14,341,42,383:1,0,10,1 +chrX 3639378 . G . . END=3639391 GT:DP:GQ:MIN_DP:PL 0/0:10:24:9:0,24,278 +chrX 3639392 . T . . END=3639392 GT:DP:GQ:MIN_DP:PL 0/0:11:8:11:0,8,313 +chrX 3639393 . A . . END=3639403 GT:DP:GQ:MIN_DP:PL 0/0:12:33:12:0,33,362 +chrX 3639404 . G . . END=3639404 GT:DP:GQ:MIN_DP:PL 0/0:12:11:12:0,11,338 +chrX 3639405 . G . . END=3639419 GT:DP:GQ:MIN_DP:PL 0/0:14:36:12:0,36,407 +chrX 3639420 . T . . END=3639420 GT:DP:GQ:MIN_DP:PL 0/0:15:5:15:0,5,352 +chrX 3639421 . G . . END=3639422 GT:DP:GQ:MIN_DP:PL 0/0:17:45:17:0,45,675 +chrX 3639423 . A . . END=3639423 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,417 +chrX 3639424 . T . . END=3639426 GT:DP:GQ:MIN_DP:PL 0/0:16:30:15:0,30,411 +chrX 3639427 . A . . END=3639427 GT:DP:GQ:MIN_DP:PL 0/0:17:16:17:0,16,522 +chrX 3639428 . G . . END=3639440 GT:DP:GQ:MIN_DP:PL 0/0:17:23:14:0,23,387 +chrX 3639441 . A . . END=3639441 GT:DP:GQ:MIN_DP:PL 0/0:17:16:17:0,16,461 +chrX 3639442 . T . . END=3639457 GT:DP:GQ:MIN_DP:PL 0/0:18:22:17:0,22,432 +chrX 3639458 . G . . END=3639458 GT:DP:GQ:MIN_DP:PL 0/0:17:16:17:0,16,501 +chrX 3639459 . G A, 211.74 . AS_QUALapprox=|224|0;AS_VarDP=2|7|0;BaseQRankSum=1.915;DP=19;MQRankSum=0.000;QUALapprox=224;RAW_GT_COUNT=0,0,1;RAW_MQandDP=66244,19;ReadPosRankSum=-0.549;VarDP=9 GT:AD:DP:GQ:PL:SB 1/1:2,7,0:9:7:224,7,0,229,21,243:2,0,7,0 +chrX 3639460 . G . . END=3639465 GT:DP:GQ:MIN_DP:PL 0/0:10:27:10:0,27,293 +chrX 3639466 . T . . END=3639466 GT:DP:GQ:MIN_DP:PL 0/0:10:15:10:0,15,278 +chrX 3639467 . G . . END=3639484 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,248 +chrX 3639485 . T . . END=3639485 GT:DP:GQ:MIN_DP:PL 0/0:13:17:13:0,17,193 +chrX 3639486 . G . . END=3639497 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,203 +chrX 3639498 . A . . END=3639498 GT:DP:GQ:MIN_DP:PL 0/0:10:16:10:0,16,279 +chrX 3639499 . C . . END=3639514 GT:DP:GQ:MIN_DP:PL 0/0:10:24:8:0,24,248 +chrX 3639515 . A G, 596.06 . AS_QUALapprox=|610|0;AS_VarDP=0|14|0;DP=17;QUALapprox=610;RAW_GT_COUNT=0,0,1;RAW_MQandDP=61200,17;VarDP=14 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,14,0:14:42:0|1:3639515_A_G:610,42,0,610,42,610:3639515:0,0,14,0 +chrX 3639516 . G . . END=3639516 GT:DP:GQ:MIN_DP:PL 0/0:14:39:14:0,39,585 +chrX 3639517 . T . . END=3639517 GT:DP:GQ:MIN_DP:PL 0/0:14:17:14:0,17,366 +chrX 3639518 . G . . END=3639518 GT:DP:GQ:MIN_DP:PL 0/0:14:36:14:0,36,540 +chrX 3639519 . GGT G, 596.03 . AS_QUALapprox=|610|0;AS_VarDP=0|14|0;DP=16;QUALapprox=610;RAW_GT_COUNT=0,0,1;RAW_MQandDP=57600,16;VarDP=14 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,14,0:14:42:0|1:3639515_A_G:610,42,0,610,42,610:3639515:0,0,14,0 +chrX 3639522 . G . . END=3639535 GT:DP:GQ:MIN_DP:PL 0/0:15:31:14:0,31,462 +chrX 3639536 . C A, 653.06 . AS_QUALapprox=|667|0;AS_VarDP=0|16|0;DP=18;QUALapprox=667;RAW_GT_COUNT=0,0,1;RAW_MQandDP=64800,18;VarDP=16 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,16,0:16:48:0|1:3639515_A_G:667,48,0,667,48,667:3639515:0,0,16,0 +chrX 3639537 . G . . END=3639540 GT:DP:GQ:MIN_DP:PL 0/0:23:69:23:0,69,759 +chrX 3639541 . T . . END=3639541 GT:DP:GQ:MIN_DP:PL 0/0:21:0:21:0,0,303 +chrX 3639542 . G . . END=3639544 GT:DP:GQ:MIN_DP:PL 0/0:22:63:22:0,63,710 +chrX 3639545 . T . . END=3639545 GT:DP:GQ:MIN_DP:PL 0/0:22:0:22:0,0,355 +chrX 3639546 . G . . END=3639548 GT:DP:GQ:MIN_DP:PL 0/0:23:66:23:0,66,735 +chrX 3639549 . T . . END=3639549 GT:DP:GQ:MIN_DP:PL 0/0:22:0:22:0,0,416 +chrX 3639550 . G . . END=3639552 GT:DP:GQ:MIN_DP:PL 0/0:21:38:19:0,38,610 +chrX 3639553 . T . . END=3639553 GT:DP:GQ:MIN_DP:PL 0/0:21:0:21:0,0,411 +chrX 3639554 . G . . END=3639556 GT:DP:GQ:MIN_DP:PL 0/0:23:55:23:0,55,700 +chrX 3639557 . T . . END=3639557 GT:DP:GQ:MIN_DP:PL 0/0:24:0:24:0,0,506 +chrX 3639558 . G . . END=3639559 GT:DP:GQ:MIN_DP:PL 0/0:24:34:24:0,34,700 +chrX 3639560 . A . . END=3639560 GT:DP:GQ:MIN_DP:PL 0/0:23:0:23:0,0,581 +chrX 3639561 . G . . END=3639565 GT:DP:GQ:MIN_DP:PL 0/0:29:24:28:0,24,693 +chrX 3639566 . T . . END=3639566 GT:DP:GQ:MIN_DP:PL 0/0:24:0:24:0,0,506 +chrX 3639567 . G . . END=3639673 GT:DP:GQ:MIN_DP:PL 0/0:47:65:47:0,65,908 +chrX 3639674 . T C, 711.64 . AS_QUALapprox=|719|0;AS_VarDP=25|28|0;BaseQRankSum=-0.763;DP=54;MQRankSum=0.000;QUALapprox=719;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=0.214;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:25,28,0:53:99:719,0,660,794,744,1538:14,11,11,17 +chrX 3639675 . G . . END=3640097 GT:DP:GQ:MIN_DP:PL 0/0:48:97:48:0,97,1316 +chrX 3640098 . G A, 624.64 . AS_QUALapprox=|632|0;AS_VarDP=19|23|0;BaseQRankSum=-1.863;DP=42;MQRankSum=0.000;QUALapprox=632;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151200,42;ReadPosRankSum=-0.013;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:19,23,0:42:99:632,0,534,689,603,1292:5,14,9,14 +chrX 3640099 . G . . END=3643003 GT:DP:GQ:MIN_DP:PL 0/0:36:24:24:0,24,675 +chrX 3643004 . CAA C, 87.60 . AS_QUALapprox=|95|0;AS_VarDP=12|5|0;BaseQRankSum=0.000;DP=32;MQRankSum=0.775;QUALapprox=95;RAW_GT_COUNT=0,1,0;RAW_MQandDP=113200,32;ReadPosRankSum=-0.398;VarDP=17 GT:AD:DP:GQ:PL:SB 0/1:12,5,0:17:95:95,0,239,131,255,386:3,9,5,0 +chrX 3643007 . A . . END=3643107 GT:DP:GQ:MIN_DP:PL 0/0:47:50:47:0,50,1213 +chrX 3643108 . A ACACCCC, 603.60 . AS_QUALapprox=|611|0;AS_VarDP=19|16|0;BaseQRankSum=0.671;DP=40;MQRankSum=0.000;QUALapprox=611;RAW_GT_COUNT=0,1,0;RAW_MQandDP=144000,40;ReadPosRankSum=2.104;VarDP=35 GT:AD:DP:GQ:PL:SB 0/1:19,16,0:35:99:611,0,625,667,673,1341:8,11,6,10 +chrX 3643109 . C . . END=3643122 GT:DP:GQ:MIN_DP:PL 0/0:47:51:47:0,51,1067 +chrX 3643123 . A . . END=3643129 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,769 +chrX 3643130 . C . . END=3643554 GT:DP:GQ:MIN_DP:PL 0/0:36:31:35:0,31,978 +chrX 3643555 . T C, 695.64 . AS_QUALapprox=|703|0;AS_VarDP=32|28|0;BaseQRankSum=-1.817;DP=60;MQRankSum=0.000;QUALapprox=703;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=-0.875;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:32,28,0:60:99:703,0,892,799,976,1775:14,18,11,17 +chrX 3643556 . A . . END=3643869 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,106,1291 +chrX 3643870 . C T, 708.64 . AS_QUALapprox=|716|0;AS_VarDP=12|24|0;BaseQRankSum=2.380;DP=39;MQRankSum=0.000;QUALapprox=716;RAW_GT_COUNT=0,1,0;RAW_MQandDP=140400,39;ReadPosRankSum=1.158;VarDP=36 GT:AD:DP:GQ:PL:SB 0/1:12,24,0:36:99:716,0,269,752,341,1093:7,5,14,10 +chrX 3643871 . G . . END=3644214 GT:DP:GQ:MIN_DP:PL 0/0:50:42:50:0,42,1158 +chrX 3644215 . C T, 510.64 . AS_QUALapprox=|518|0;AS_VarDP=13|19|0;BaseQRankSum=-1.442;DP=34;MQRankSum=0.000;QUALapprox=518;RAW_GT_COUNT=0,1,0;RAW_MQandDP=122281,34;ReadPosRankSum=0.672;VarDP=32 GT:AD:DP:GQ:PL:SB 0/1:13,19,0:32:99:518,0,356,558,413,970:9,4,12,7 +chrX 3644216 . A . . END=3644233 GT:DP:GQ:MIN_DP:PL 0/0:28:66:28:0,66,984 +chrX 3644234 . CAAA C, 305.60 . AS_QUALapprox=|313|0;AS_VarDP=17|11|0;BaseQRankSum=0.292;DP=46;MQRankSum=0.000;QUALapprox=313;RAW_GT_COUNT=0,1,0;RAW_MQandDP=164454,46;ReadPosRankSum=0.380;VarDP=28 GT:AD:DP:GQ:PL:SB 0/1:17,11,0:28:99:313,0,491,364,524,889:8,9,8,3 +chrX 3644238 . A . . END=3644392 GT:DP:GQ:MIN_DP:PL 0/0:22:25:19:0,25,532 +chrX 3644393 . A . . END=3644393 GT:DP:GQ:MIN_DP:PL 0/0:20:0:20:0,0,536 +chrX 3644394 . C . . END=3644394 GT:DP:GQ:MIN_DP:PL 0/0:21:28:21:0,28,640 +chrX 3644395 . T . . END=3644399 GT:DP:GQ:MIN_DP:PL 0/0:22:0:22:0,0,168 +chrX 3644400 . C CA,CAA, 443.02 . AS_QUALapprox=|341|389|0;AS_VarDP=0|6|9|0;DP=32;QUALapprox=460;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104776,32;VarDP=15 GT:AD:DP:GQ:PL:SB 1/2:0,6,9,0:15:71:460,180,119,119,0,71,381,171,116,347:0,0,4,11 +chrX 3644401 . A . . END=3648592 GT:DP:GQ:MIN_DP:PL 0/0:58:42:58:0,42,1127 +chrX 3648593 . A . . END=3648593 GT:DP:GQ:MIN_DP:PL 0/0:59:0:59:0,0,1546 +chrX 3648594 . C . . END=3648603 GT:DP:GQ:MIN_DP:PL 0/0:62:48:62:0,48,1521 +chrX 3648604 . T . . END=3648605 GT:DP:GQ:MIN_DP:PL 0/0:59:0:59:0,0,1431 +chrX 3648606 . C CTGTG, 735.60 . AS_QUALapprox=|743|0;AS_VarDP=13|21|0;BaseQRankSum=-0.175;DP=57;MQRankSum=-1.086;QUALapprox=743;RAW_GT_COUNT=0,1,0;RAW_MQandDP=202736,57;ReadPosRankSum=-1.155;VarDP=34 GT:AD:DP:GQ:PL:SB 0/1:13,21,0:34:99:743,0,453,783,516,1299:6,7,11,10 +chrX 3648607 . T . . END=3648658 GT:DP:GQ:MIN_DP:PL 0/0:64:94:64:0,94,1665 +chrX 3648659 . A . . END=3648660 GT:DP:GQ:MIN_DP:PL 0/0:55:0:55:0,0,1241 +chrX 3648661 . A . . END=3649585 GT:DP:GQ:MIN_DP:PL 0/0:20:22:17:0,22,462 +chrX 3649586 . T . . END=3649586 GT:DP:GQ:MIN_DP:PL 0/0:18:19:18:0,19,516 +chrX 3649587 . G . . END=3649589 GT:DP:GQ:MIN_DP:PL 0/0:18:40:18:0,40,506 +chrX 3649590 . A . . END=3649596 GT:DP:GQ:MIN_DP:PL 0/0:20:0:20:0,0,225 +chrX 3649597 . G . . END=3649599 GT:DP:GQ:MIN_DP:PL 0/0:18:21:18:0,21,315 +chrX 3649600 . A . . END=3649600 GT:DP:GQ:MIN_DP:PL 0/0:17:0:17:0,0,293 +chrX 3649601 . G . . END=3649604 GT:DP:GQ:MIN_DP:PL 0/0:18:24:18:0,24,360 +chrX 3649605 . A . . END=3649605 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,278 +chrX 3649606 . G . . END=3649609 GT:DP:GQ:MIN_DP:PL 0/0:15:24:15:0,24,360 +chrX 3649610 . A . . END=3649610 GT:DP:GQ:MIN_DP:PL 0/0:13:14:13:0,14,392 +chrX 3649611 . G . . END=3649614 GT:DP:GQ:MIN_DP:PL 0/0:14:24:14:0,24,360 +chrX 3649615 . A . . END=3649615 GT:DP:GQ:MIN_DP:PL 0/0:13:0:13:0,0,292 +chrX 3649616 . G . . END=3649619 GT:DP:GQ:MIN_DP:PL 0/0:11:30:11:0,30,338 +chrX 3649620 . A . . END=3649620 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,303 +chrX 3649621 . G . . END=3649622 GT:DP:GQ:MIN_DP:PL 0/0:11:30:11:0,30,450 +chrX 3649623 . G . . END=3649625 GT:DP:GQ:MIN_DP:PL 0/0:10:0:10:0,0,168 +chrX 3649626 . A . . END=3649627 GT:DP:GQ:MIN_DP:PL 0/0:11:24:11:0,24,360 +chrX 3649628 . A . . END=3649628 GT:DP:GQ:MIN_DP:PL 0/0:9:2:9:0,2,223 +chrX 3649629 . G . . END=3649645 GT:DP:GQ:MIN_DP:PL 0/0:12:24:11:0,24,352 +chrX 3649646 . A . . END=3649646 GT:DP:GQ:MIN_DP:PL 0/0:13:14:13:0,14,352 +chrX 3649647 . G . . END=3649654 GT:DP:GQ:MIN_DP:PL 0/0:13:21:12:0,21,317 +chrX 3649655 . T . . END=3649656 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,178 +chrX 3649657 . G . . END=3649657 GT:DP:GQ:MIN_DP:PL 0/0:12:36:12:0,36,397 +chrX 3649658 . A . . END=3649658 GT:DP:GQ:MIN_DP:PL 0/0:11:18:11:0,18,272 +chrX 3649659 . G . . END=3649660 GT:DP:GQ:MIN_DP:PL 0/0:13:33:13:0,33,495 +chrX 3649661 . A . . END=3649661 GT:DP:GQ:MIN_DP:PL 0/0:11:8:11:0,8,262 +chrX 3649662 . G . . END=3649665 GT:DP:GQ:MIN_DP:PL 0/0:13:33:13:0,33,495 +chrX 3649666 . A . . END=3649666 GT:DP:GQ:MIN_DP:PL 0/0:13:0:13:0,0,313 +chrX 3649667 . G . . END=3649673 GT:DP:GQ:MIN_DP:PL 0/0:12:27:12:0,27,405 +chrX 3649674 . C . . END=3649674 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,189 +chrX 3649675 . G . . END=3649679 GT:DP:GQ:MIN_DP:PL 0/0:12:22:11:0,22,338 +chrX 3649680 . A . . END=3649680 GT:DP:GQ:MIN_DP:PL 0/0:11:18:11:0,18,282 +chrX 3649681 . A . . END=3649681 GT:DP:GQ:MIN_DP:PL 0/0:11:24:11:0,24,360 +chrX 3649682 . T . . END=3649682 GT:DP:GQ:MIN_DP:PL 0/0:11:18:11:0,18,242 +chrX 3649683 . G . . END=3649685 GT:DP:GQ:MIN_DP:PL 0/0:10:21:10:0,21,315 +chrX 3649686 . A . . END=3649686 GT:DP:GQ:MIN_DP:PL 0/0:9:18:9:0,18,270 +chrX 3649687 . G . . END=3649704 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,278 +chrX 3649705 . A . . END=3649705 GT:DP:GQ:MIN_DP:PL 0/0:10:5:10:0,5,247 +chrX 3649706 . A . . END=3649706 GT:DP:GQ:MIN_DP:PL 0/0:10:27:10:0,27,405 +chrX 3649707 . T . . END=3649707 GT:DP:GQ:MIN_DP:PL 0/0:10:16:10:0,16,268 +chrX 3649708 . G . . END=3649756 GT:DP:GQ:MIN_DP:PL 0/0:16:27:10:0,27,336 +chrX 3649757 . T . . END=3649757 GT:DP:GQ:MIN_DP:PL 0/0:20:11:20:0,11,516 +chrX 3649758 . G . . END=3649765 GT:DP:GQ:MIN_DP:PL 0/0:20:45:20:0,45,675 +chrX 3649766 . A . . END=3649766 GT:DP:GQ:MIN_DP:PL 0/0:19:18:19:0,18,501 +chrX 3649767 . G . . END=3649775 GT:DP:GQ:MIN_DP:PL 0/0:20:51:20:0,51,765 +chrX 3649776 . A . . END=3649776 GT:DP:GQ:MIN_DP:PL 0/0:17:12:17:0,12,482 +chrX 3649777 . G . . END=3649814 GT:DP:GQ:MIN_DP:PL 0/0:20:25:17:0,25,506 +chrX 3649815 . A . . END=3649815 GT:DP:GQ:MIN_DP:PL 0/0:20:0:20:0,0,475 +chrX 3649816 . G . . END=3649822 GT:DP:GQ:MIN_DP:PL 0/0:24:22:19:0,22,530 +chrX 3649823 . A . . END=3649823 GT:DP:GQ:MIN_DP:PL 0/0:17:0:17:0,0,371 +chrX 3649824 . G . . END=3650292 GT:DP:GQ:MIN_DP:PL 0/0:28:21:18:0,21,475 +chrX 3650293 . G . . END=3650293 GT:DP:GQ:MIN_DP:PL 0/0:44:3:44:0,3,1121 +chrX 3650294 . G . . END=3650506 GT:DP:GQ:MIN_DP:PL 0/0:34:26:32:0,26,812 +chrX 3650507 . C . . END=3650507 GT:DP:GQ:MIN_DP:PL 0/0:30:12:30:0,12,745 +chrX 3650508 . G . . END=3650512 GT:DP:GQ:MIN_DP:PL 0/0:33:46:33:0,46,887 +chrX 3650513 . T . . END=3650513 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,770 +chrX 3650514 . C . . END=3650517 GT:DP:GQ:MIN_DP:PL 0/0:34:38:33:0,38,903 +chrX 3650518 . T . . END=3650518 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,734 +chrX 3650519 . C . . END=3650519 GT:DP:GQ:MIN_DP:PL 0/0:41:28:41:0,28,1045 +chrX 3650520 . C CA, 489.03 . AS_QUALapprox=|503|0;AS_VarDP=0|27|0;DP=42;QUALapprox=503;RAW_GT_COUNT=0,0,1;RAW_MQandDP=144201,42;VarDP=27 GT:AD:DP:GQ:PL:SB 1/1:0,27,0:27:78:503,78,0,503,79,503:0,0,10,17 +chrX 3650521 . A . . END=3650540 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,99,1485 +chrX 3650541 . G . . END=3650541 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,1007 +chrX 3650542 . A . . END=3650542 GT:DP:GQ:MIN_DP:PL 0/0:49:43:49:0,43,1414 +chrX 3650543 . G . . END=3650544 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,1245 +chrX 3650545 . G . . END=3650576 GT:DP:GQ:MIN_DP:PL 0/0:46:26:45:0,26,1266 +chrX 3650577 . T . . END=3650577 GT:DP:GQ:MIN_DP:PL 0/0:47:7:47:0,7,1174 +chrX 3650578 . G . . END=3653623 GT:DP:GQ:MIN_DP:PL 0/0:49:34:36:0,34,1023 +chrX 3653624 . T C, 424.64 . AS_QUALapprox=|432|0;AS_VarDP=23|19|0;BaseQRankSum=-0.509;DP=43;MQRankSum=-0.137;QUALapprox=432;RAW_GT_COUNT=0,1,0;RAW_MQandDP=149380,43;ReadPosRankSum=-1.821;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:23,19,0:42:99:432,0,610,501,666,1166:14,9,10,9 +chrX 3653625 . A . . END=3653798 GT:DP:GQ:MIN_DP:PL 0/0:38:50:38:0,50,837 +chrX 3653799 . ATATATATTATATACTATGTGATATATATAT A, 86.60 . AS_QUALapprox=|94|0;AS_VarDP=23|5|0;BaseQRankSum=1.152;DP=44;MQRankSum=-0.090;QUALapprox=94;RAW_GT_COUNT=0,1,0;RAW_MQandDP=146184,44;ReadPosRankSum=-2.457;VarDP=28 GT:AD:DP:GQ:PL:SB 0/1:23,5,0:28:94:94,0,713,163,732,895:10,13,3,2 +chrX 3653830 . T . . END=3653940 GT:DP:GQ:MIN_DP:PL 0/0:40:53:40:0,53,913 +chrX 3653941 . G . . END=3653941 GT:DP:GQ:MIN_DP:PL 0/0:33:14:33:0,14,847 +chrX 3653942 . A . . END=3653980 GT:DP:GQ:MIN_DP:PL 0/0:30:49:30:0,49,864 +chrX 3653981 . T A, 363.64 . AS_QUALapprox=|371|0;AS_VarDP=17|15|0;BaseQRankSum=-0.550;DP=33;MQRankSum=0.888;QUALapprox=371;RAW_GT_COUNT=0,1,0;RAW_MQandDP=116597,33;ReadPosRankSum=0.321;VarDP=32 GT:AD:DP:GQ:PL:SB 0/1:17,15,0:32:99:371,0,447,421,492,913:7,10,8,7 +chrX 3653982 . T . . END=3654482 GT:DP:GQ:MIN_DP:PL 0/0:50:34:44:0,34,1066 +chrX 3654483 . G T, 67.64 . AS_QUALapprox=|75|0;AS_VarDP=38|15|0;BaseQRankSum=-1.672;DP=55;MQRankSum=-1.013;QUALapprox=75;RAW_GT_COUNT=0,1,0;RAW_MQandDP=191001,55;ReadPosRankSum=0.682;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:38,15,0:53:75:0|1:3654478_G_T:75,0,1014,187,1050,1237:3654478:7,31,10,5 +chrX 3654484 . T . . END=3654492 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,102,1530 +chrX 3654493 . G . . END=3654493 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,810 +chrX 3654494 . A . . END=3654513 GT:DP:GQ:MIN_DP:PL 0/0:39:27:37:0,27,1068 +chrX 3654514 . A . . END=3654514 GT:DP:GQ:MIN_DP:PL 0/0:38:10:38:0,10,1052 +chrX 3654515 . C . . END=3659720 GT:DP:GQ:MIN_DP:PL 0/0:57:31:55:0,31,1171 +chrX 3659721 . TTTTTTTTG T, 231.60 . AS_QUALapprox=|239|0;AS_VarDP=16|15|0;BaseQRankSum=1.053;DP=47;MQRankSum=-0.046;QUALapprox=239;RAW_GT_COUNT=0,1,0;RAW_MQandDP=164176,47;ReadPosRankSum=1.147;VarDP=31 GT:AD:DP:GQ:PL:SB 0/1:16,15,0:31:99:239,0,546,288,590,878:9,7,8,7 +chrX 3659723 . T *,G, 496.01 . AS_QUALapprox=|0|730|0;AS_VarDP=0|23|15|0;DP=45;QUALapprox=1568;RAW_GT_COUNT=0,0,1;RAW_MQandDP=156976,45;VarDP=38 GT:AD:DP:GQ:PL:SB 1/2:0,23,15,0:38:99:1568,577,493,838,0,872,1506,586,888,1529:0,0,23,15 +chrX 3659728 . TG *,T, 20.98 . AS_QUALapprox=|0|732|0;AS_VarDP=0|25|6|0;DP=42;QUALapprox=1598;RAW_GT_COUNT=0,0,1;RAW_MQandDP=146176,42;VarDP=31 GT:AD:DP:GQ:PL:SB 1/2:0,25,6,0:31:18:1598,141,18,911,0,866,1337,140,916,1288:0,0,19,12 +chrX 3659730 . T . . END=3659809 GT:DP:GQ:MIN_DP:PL 0/0:39:50:39:0,50,900 +chrX 3659810 . C T, 275.64 . AS_QUALapprox=|283|0;AS_VarDP=26|12|0;BaseQRankSum=1.139;DP=40;MQRankSum=0.000;QUALapprox=283;RAW_GT_COUNT=0,1,0;RAW_MQandDP=144000,40;ReadPosRankSum=-0.094;VarDP=38 GT:AD:DP:GQ:PL:SB 0/1:26,12,0:38:99:283,0,699,361,735,1097:12,14,6,6 +chrX 3659811 . G . . END=3661070 GT:DP:GQ:MIN_DP:PL 0/0:57:91:57:0,91,1439 +chrX 3661071 . T A, 831.64 . AS_QUALapprox=|839|0;AS_VarDP=27|32|0;BaseQRankSum=-1.110;DP=62;MQRankSum=-3.929;QUALapprox=839;RAW_GT_COUNT=0,1,0;RAW_MQandDP=188462,62;ReadPosRankSum=2.321;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:27,32,0:59:99:839,0,728,920,824,1744:14,13,16,16 +chrX 3661072 . A . . END=3661437 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,104,1500 +chrX 3661438 . C T, 775.64 . AS_QUALapprox=|783|0;AS_VarDP=21|28|0;BaseQRankSum=0.017;DP=55;MQRankSum=0.000;QUALapprox=783;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-1.749;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:21,28,0:49:99:783,0,553,847,637,1483:9,12,8,20 +chrX 3661439 . T . . END=3661514 GT:DP:GQ:MIN_DP:PL 0/0:38:90:38:0,90,1242 +chrX 3661515 . C G, 519.64 . AS_QUALapprox=|527|0;AS_VarDP=19|19|0;BaseQRankSum=-0.500;DP=39;MQRankSum=0.000;QUALapprox=527;RAW_GT_COUNT=0,1,0;RAW_MQandDP=140400,39;ReadPosRankSum=-0.102;VarDP=38 GT:AD:DP:GQ:PL:SB 0/1:19,19,0:38:99:527,0,521,583,578,1162:13,6,10,9 +chrX 3661516 . A . . END=3661595 GT:DP:GQ:MIN_DP:PL 0/0:40:96:40:0,96,1210 +chrX 3661596 . G GA, 428.60 . AS_QUALapprox=|436|0;AS_VarDP=15|21|0;BaseQRankSum=0.620;DP=47;MQRankSum=0.000;QUALapprox=436;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=0.241;VarDP=36 GT:AD:DP:GQ:PL:SB 0/1:15,21,0:36:99:436,0,280,481,343,824:8,7,12,9 +chrX 3661597 . A . . END=3661815 GT:DP:GQ:MIN_DP:PL 0/0:63:86:63:0,86,1315 +chrX 3661816 . A G, 741.64 . AS_QUALapprox=|749|0;AS_VarDP=30|28|0;BaseQRankSum=-0.459;DP=58;MQRankSum=0.000;QUALapprox=749;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-0.584;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:30,28,0:58:99:749,0,828,839,913,1752:15,15,17,11 +chrX 3661817 . G . . END=3662260 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,119,1683 +chrX 3662261 . A G, 950.64 . AS_QUALapprox=|958|0;AS_VarDP=27|35|0;BaseQRankSum=-0.925;DP=65;MQRankSum=0.000;QUALapprox=958;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=1.669;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:27,35,0:62:99:958,0,722,1039,827,1866:9,18,15,20 +chrX 3662262 . G . . END=3662423 GT:DP:GQ:MIN_DP:PL 0/0:57:91:57:0,91,1509 +chrX 3662424 . A G, 872.64 . AS_QUALapprox=|880|0;AS_VarDP=25|32|0;BaseQRankSum=-1.136;DP=59;MQRankSum=-0.332;QUALapprox=880;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208164,59;ReadPosRankSum=-0.579;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:25,32,0:57:99:880,0,678,955,774,1729:17,8,16,16 +chrX 3662425 . G . . END=3662461 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 3662462 . A G, 746.64 . AS_QUALapprox=|754|0;AS_VarDP=28|27|0;BaseQRankSum=0.856;DP=57;MQRankSum=-1.029;QUALapprox=754;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198964,57;ReadPosRankSum=1.979;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:28,27,0:55:99:754,0,752,837,833,1670:16,12,11,16 +chrX 3662463 . A . . END=3662689 GT:DP:GQ:MIN_DP:PL 0/0:41:27:37:0,27,1007 +chrX 3662690 . A G, 433.64 . AS_QUALapprox=|441|0;AS_VarDP=18|17|0;BaseQRankSum=-0.126;DP=40;MQRankSum=-0.972;QUALapprox=441;RAW_GT_COUNT=0,1,0;RAW_MQandDP=140609,40;ReadPosRankSum=0.033;VarDP=35 GT:AD:DP:GQ:PL:SB 0/1:18,17,0:35:99:441,0,490,495,541,1036:8,10,8,9 +chrX 3662691 . T . . END=3662693 GT:DP:GQ:MIN_DP:PL 0/0:34:69:34:0,69,1035 +chrX 3662694 . C CA, 244.60 . AS_QUALapprox=|252|0;AS_VarDP=11|18|0;BaseQRankSum=0.294;DP=50;MQRankSum=-1.612;QUALapprox=252;RAW_GT_COUNT=0,1,0;RAW_MQandDP=167749,50;ReadPosRankSum=-2.350;VarDP=29 GT:AD:DP:GQ:PL:SB 0/1:11,18,0:29:99:252,0,136,285,188,473:6,5,5,13 +chrX 3662695 . A . . END=3662753 GT:DP:GQ:MIN_DP:PL 0/0:37:72:37:0,72,1056 +chrX 3662754 . C T, 405.64 . AS_QUALapprox=|413|0;AS_VarDP=19|17|0;BaseQRankSum=-2.178;DP=39;MQRankSum=0.000;QUALapprox=413;RAW_GT_COUNT=0,1,0;RAW_MQandDP=140400,39;ReadPosRankSum=0.111;VarDP=36 GT:AD:DP:GQ:PL:SB 0/1:19,17,0:36:99:413,0,553,470,603,1074:13,6,10,7 +chrX 3662755 . C . . END=3662995 GT:DP:GQ:MIN_DP:PL 0/0:44:59:44:0,59,1003 +chrX 3662996 . T . . END=3662997 GT:DP:GQ:MIN_DP:PL 0/0:40:8:40:0,8,1082 +chrX 3662998 . T TA,TAAA, 490.60 . AS_QUALapprox=|83|498|0;AS_VarDP=14|1|16|0;BaseQRankSum=2.288;DP=46;MQRankSum=-1.259;QUALapprox=498;RAW_GT_COUNT=0,1,0;RAW_MQandDP=161600,46;ReadPosRankSum=-1.058;VarDP=31 GT:AD:DP:GQ:PL:SB 0/2:14,1,16,0:31:99:498,415,608,0,246,447,496,669,395,833:5,9,7,10 +chrX 3662999 . A . . END=3663029 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,99,1485 +chrX 3663030 . G A, 726.64 . AS_QUALapprox=|734|0;AS_VarDP=29|27|0;BaseQRankSum=-0.092;DP=58;MQRankSum=-1.001;QUALapprox=734;RAW_GT_COUNT=0,1,0;RAW_MQandDP=206800,58;ReadPosRankSum=0.476;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:29,27,0:56:99:734,0,818,821,899,1720:15,14,12,15 +chrX 3663031 . G . . END=3663200 GT:DP:GQ:MIN_DP:PL 0/0:58:86:58:0,86,1321 +chrX 3663201 . A G, 600.64 . AS_QUALapprox=|608|0;AS_VarDP=16|21|0;BaseQRankSum=-0.818;DP=38;MQRankSum=0.000;QUALapprox=608;RAW_GT_COUNT=0,1,0;RAW_MQandDP=136800,38;ReadPosRankSum=-0.261;VarDP=37 GT:AD:DP:GQ:PL:SB 0/1:16,21,0:37:99:608,0,445,656,508,1164:6,10,13,8 +chrX 3663202 . G . . END=3663381 GT:DP:GQ:MIN_DP:PL 0/0:50:86:50:0,86,1301 +chrX 3663382 . T C, 1345.06 . AS_QUALapprox=|1359|0;AS_VarDP=0|44|0;DP=45;QUALapprox=1359;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162000,45;VarDP=44 GT:AD:DP:GQ:PL:SB 1/1:0,44,0:44:99:1359,131,0,1359,131,1359:0,0,23,21 +chrX 3663383 . G . . END=3663467 GT:DP:GQ:MIN_DP:PL 0/0:44:73:44:0,73,1125 +chrX 3663468 . A AC, 426.01 . AS_QUALapprox=|506|0;AS_VarDP=17|15|0;BaseQRankSum=-1.186;DP=46;MQRankSum=-1.186;QUALapprox=506;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158576,46;ReadPosRankSum=0.659;VarDP=32 GT:AD:DP:GQ:PL:SB 0/1:17,15,0:32:99:506,0,606,495,552,1041:8,8,5,5 +chrX 3663469 . A *,C,ACACACAC,ACACACACAC, 772.05 . AS_QUALapprox=|0|674|564|248|0;AS_VarDP=0|0|15|10|0|0;DP=45;QUALapprox=1240;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154976,45;VarDP=25 GT:AD:DP:GQ:PL:SB 2/3:0,0,15,10,0,0:25:99:1240,762,845,566,478,587,676,412,0,851,992,781,530,647,1166,1143,881,615,726,1135,1279:0,0,12,13 +chrX 3663470 . A . . END=3663470 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,1092 +chrX 3663471 . A C, 424.04 . AS_QUALapprox=|471|0;AS_VarDP=23|15|0;BaseQRankSum=-2.131;DP=45;MQRankSum=-1.451;QUALapprox=471;RAW_GT_COUNT=0,1,0;RAW_MQandDP=156976,45;ReadPosRankSum=1.235;VarDP=38 GT:AD:DP:GQ:PL:SB 0/1:23,15,0:38:99:471,0,794,486,860,1399:12,11,5,5 +chrX 3663472 . A . . END=3663472 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 3663473 . A . . END=3663473 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1305 +chrX 3663474 . A . . END=3663474 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 3663475 . T . . END=3663475 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,1215 +chrX 3663476 . T . . END=3663479 GT:DP:GQ:MIN_DP:PL 0/0:48:22:47:0,22,1215 +chrX 3663480 . T . . END=3663480 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1226 +chrX 3663481 . T . . END=3664335 GT:DP:GQ:MIN_DP:PL 0/0:59:62:59:0,62,1116 +chrX 3664336 . G A, 1956.06 . AS_QUALapprox=|1970|0;AS_VarDP=0|60|0;DP=61;QUALapprox=1970;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:1970,180,0,1970,180,1970:0,0,37,23 +chrX 3664337 . A . . END=3664661 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 3664662 . C T, 1534.06 . AS_QUALapprox=|1548|0;AS_VarDP=0|48|0;DP=50;QUALapprox=1548;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=48 GT:AD:DP:GQ:PL:SB 1/1:0,48,0:48:99:1548,143,0,1548,143,1548:0,0,23,25 +chrX 3664663 . G . . END=3665408 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,112,1544 +chrX 3665409 . C G, 1861.06 . AS_QUALapprox=|1875|0;AS_VarDP=0|57|0;DP=58;QUALapprox=1875;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1875,171,0,1875,171,1875:0,0,27,30 +chrX 3665410 . A . . END=3665726 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 3665727 . A G, 1747.06 . AS_QUALapprox=|1761|0;AS_VarDP=0|55|0;DP=56;QUALapprox=1761;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201364,56;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1761,164,0,1761,164,1761:0,0,19,36 +chrX 3665728 . G . . END=3665920 GT:DP:GQ:MIN_DP:PL 0/0:40:59:39:0,59,1028 +chrX 3665921 . T TGGATGG, 1690.03 . AS_QUALapprox=|1704|0;AS_VarDP=0|38|0;DP=43;QUALapprox=1704;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154800,43;VarDP=38 GT:AD:DP:GQ:PL:SB 1/1:0,38,0:38:99:1704,114,0,1704,114,1705:0,0,21,17 +chrX 3665922 . G . . END=3665990 GT:DP:GQ:MIN_DP:PL 0/0:42:86:42:0,86,1166 +chrX 3665991 . A T, 1337.06 . AS_QUALapprox=|1351|0;AS_VarDP=0|40|0;DP=43;QUALapprox=1351;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154225,43;VarDP=40 GT:AD:DP:GQ:PL:SB 1/1:0,40,0:40:99:1351,120,0,1351,120,1351:0,0,24,16 +chrX 3665992 . G . . END=3666019 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,105,1380 +chrX 3666020 . T G, 1494.06 . AS_QUALapprox=|1508|0;AS_VarDP=1|47|0;BaseQRankSum=-0.427;DP=51;MQRankSum=5.003;QUALapprox=1508;RAW_GT_COUNT=0,0,1;RAW_MQandDP=179909,51;ReadPosRankSum=-1.661;VarDP=48 GT:AD:DP:GQ:PL:SB 1/1:1,47,0:48:99:1508,118,0,1511,141,1535:0,1,27,20 +chrX 3666021 . T . . END=3666151 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,114,1578 +chrX 3666152 . ATT A, 582.03 . AS_QUALapprox=|596|0;AS_VarDP=1|21|0;BaseQRankSum=-0.715;DP=48;MQRankSum=0.000;QUALapprox=596;RAW_GT_COUNT=0,0,1;RAW_MQandDP=171049,48;ReadPosRankSum=0.158;VarDP=22 GT:AD:DP:GQ:PL:SB 1/1:1,21,0:22:45:596,45,0,599,63,617:1,0,8,13 +chrX 3666155 . T . . END=3666173 GT:DP:GQ:MIN_DP:PL 0/0:40:52:40:0,52,898 +chrX 3666174 . A . . END=3666174 GT:DP:GQ:MIN_DP:PL 0/0:30:6:30:0,6,794 +chrX 3666175 . G . . END=3666247 GT:DP:GQ:MIN_DP:PL 0/0:38:67:38:0,67,859 +chrX 3666248 . A G, 1742.06 . AS_QUALapprox=|1756|0;AS_VarDP=0|40|0;DP=41;QUALapprox=1756;RAW_GT_COUNT=0,0,1;RAW_MQandDP=143681,41;VarDP=40 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,40,0:40:99:0|1:3666248_A_G:1756,120,0,1756,120,1756:3666248:0,0,15,25 +chrX 3666249 . G . . END=3666258 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,102,1195 +chrX 3666259 . G A, 1708.06 . AS_QUALapprox=|1722|0;AS_VarDP=0|39|0;DP=40;QUALapprox=1722;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140081,40;VarDP=39 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,39,0:39:99:0|1:3666248_A_G:1722,117,0,1722,117,1722:3666248:0,0,16,23 +chrX 3666260 . T . . END=3666896 GT:DP:GQ:MIN_DP:PL 0/0:42:24:36:0,24,1013 +chrX 3666897 . G . . END=3666897 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,860 +chrX 3666898 . A . . END=3666901 GT:DP:GQ:MIN_DP:PL 0/0:34:36:33:0,36,1027 +chrX 3666902 . C . . END=3666903 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,902 +chrX 3666904 . T . . END=3666906 GT:DP:GQ:MIN_DP:PL 0/0:44:82:44:0,82,1329 +chrX 3666907 . C . . END=3666907 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,782 +chrX 3666908 . T . . END=3666908 GT:DP:GQ:MIN_DP:PL 0/0:44:83:44:0,83,1340 +chrX 3666909 . T . . END=3666910 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,421 +chrX 3666911 . T TAAA,TAAAA, 1497.03 . AS_QUALapprox=|1511|1211|0;AS_VarDP=0|17|2|0;DP=57;QUALapprox=1511;RAW_GT_COUNT=0,0,1;RAW_MQandDP=196419,57;VarDP=19 GT:AD:DP:GQ:PL:SB 1/1:0,17,2,0:19:35:1511,132,0,431,35,300,1037,128,421,916:0,0,8,11 +chrX 3666912 . A . . END=3666932 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 3666933 . G . . END=3666934 GT:DP:GQ:MIN_DP:PL 0/0:72:0:72:0,0,1935 +chrX 3666935 . A . . END=3666976 GT:DP:GQ:MIN_DP:PL 0/0:74:99:74:0,103,1800 +chrX 3666977 . T . . END=3666977 GT:DP:GQ:MIN_DP:PL 0/0:73:11:73:0,11,1920 +chrX 3666978 . A . . END=3667423 GT:DP:GQ:MIN_DP:PL 0/0:63:49:63:0,49,1220 +chrX 3667424 . T C, 1249.06 . AS_QUALapprox=|1263|0;AS_VarDP=0|40|0;DP=45;QUALapprox=1263;RAW_GT_COUNT=0,0,1;RAW_MQandDP=99351,45;VarDP=40 GT:AD:DP:GQ:PL:SB 1/1:0,40,0:40:99:1263,119,0,1357,132,1667:0,0,17,23 +chrX 3667425 . G . . END=3668273 GT:DP:GQ:MIN_DP:PL 0/0:56:68:56:0,68,1167 +chrX 3668274 . A G, 1876.06 . AS_QUALapprox=|1890|0;AS_VarDP=0|59|0;DP=62;QUALapprox=1890;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1890,176,0,1890,176,1890:0,0,33,26 +chrX 3668275 . G . . END=3669315 GT:DP:GQ:MIN_DP:PL 0/0:58:92:58:0,92,1425 +chrX 3669316 . CTCCATCCA C, 1828.03 . AS_QUALapprox=|1842|0;AS_VarDP=0|42|0;DP=49;QUALapprox=1842;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=42 GT:AD:DP:GQ:PL:SB 1/1:0,42,0:42:99:1842,127,0,1842,127,1842:0,0,21,21 +chrX 3669325 . T . . END=3672132 GT:DP:GQ:MIN_DP:PL 0/0:55:55:55:0,55,1162 +chrX 3672133 . C T, 2647.06 . AS_QUALapprox=|2661|0;AS_VarDP=0|63|0;DP=64;QUALapprox=2661;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=63 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,63,0:63:99:0|1:3672133_C_T:2661,190,0,2661,190,2661:3672133:0,0,28,35 +chrX 3672134 . G . . END=3672154 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 3672155 . A G, 2647.06 . AS_QUALapprox=|2661|0;AS_VarDP=0|63|0;DP=64;QUALapprox=2661;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=63 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,63,0:63:99:0|1:3672133_C_T:2661,190,0,2661,190,2661:3672133:0,0,23,40 +chrX 3672156 . T . . END=3672981 GT:DP:GQ:MIN_DP:PL 0/0:57:97:57:0,97,1530 +chrX 3672982 . C A, 1831.06 . AS_QUALapprox=|1845|0;AS_VarDP=1|56|0;BaseQRankSum=2.871;DP=60;MQRankSum=0.000;QUALapprox=1845;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;ReadPosRankSum=1.034;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:1,56,0:57:99:1845,161,0,1847,168,1854:1,0,25,31 +chrX 3672983 . C . . END=3674683 GT:DP:GQ:MIN_DP:PL 0/0:56:87:56:0,87,1197 +chrX 3674684 . G A, 1579.06 . AS_QUALapprox=|1593|0;AS_VarDP=0|49|0;DP=51;QUALapprox=1593;RAW_GT_COUNT=0,0,1;RAW_MQandDP=178202,51;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1593,147,0,1593,147,1593:0,0,23,26 +chrX 3674685 . G . . END=3674805 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 3674806 . C T, 1936.06 . AS_QUALapprox=|1950|0;AS_VarDP=0|57|0;DP=58;QUALapprox=1950;RAW_GT_COUNT=0,0,1;RAW_MQandDP=199224,58;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1950,171,0,1950,171,1950:0,0,27,30 +chrX 3674807 . G . . END=3675314 GT:DP:GQ:MIN_DP:PL 0/0:53:98:53:0,98,1344 +chrX 3675315 . C T, 1383.06 . AS_QUALapprox=|1397|0;AS_VarDP=1|43|0;BaseQRankSum=2.583;DP=45;MQRankSum=0.000;QUALapprox=1397;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162000,45;ReadPosRankSum=0.315;VarDP=44 GT:AD:DP:GQ:PL:SB 1/1:1,43,0:44:99:1397,122,0,1400,129,1407:0,1,19,24 +chrX 3675316 . T . . END=3675617 GT:DP:GQ:MIN_DP:PL 0/0:51:93:51:0,93,1250 +chrX 3675618 . C G, 1658.06 . AS_QUALapprox=|1672|0;AS_VarDP=0|51|0;DP=52;QUALapprox=1672;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1672,152,0,1672,152,1672:0,0,22,29 +chrX 3675619 . T . . END=3675672 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,104,1366 +chrX 3675673 . TTCC T, 1875.03 . AS_QUALapprox=|1889|0;AS_VarDP=0|42|0;DP=52;QUALapprox=1889;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=42 GT:AD:DP:GQ:PL:SB 1/1:0,42,0:42:99:1889,127,0,1889,127,1889:0,0,21,21 +chrX 3675677 . T . . END=3677346 GT:DP:GQ:MIN_DP:PL 0/0:53:37:52:0,37,1398 +chrX 3677347 . G . . END=3677347 GT:DP:GQ:MIN_DP:PL 0/0:63:19:63:0,19,1207 +chrX 3677348 . A . . END=3677535 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,117,1733 +chrX 3677536 . G A,GA, 1700.06 . AS_QUALapprox=|1714|0|0;AS_VarDP=0|59|0|0;DP=66;QUALapprox=1714;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0,0:59:99:1714,183,0,1819,193,2289,1798,198,2086,2001:0,0,20,39 +chrX 3677537 . A . . END=3678664 GT:DP:GQ:MIN_DP:PL 0/0:56:98:56:0,98,1270 +chrX 3678665 . C T, 2179.06 . AS_QUALapprox=|2193|0;AS_VarDP=0|65|0;DP=67;QUALapprox=2193;RAW_GT_COUNT=0,0,1;RAW_MQandDP=239965,67;VarDP=65 GT:AD:DP:GQ:PL:SB 1/1:0,65,0:65:99:2193,195,0,2193,195,2193:0,0,34,31 +chrX 3678666 . T . . END=3682259 GT:DP:GQ:MIN_DP:PL 0/0:61:80:61:0,80,1141 +chrX 3682260 . C T, 1599.06 . AS_QUALapprox=|1613|0;AS_VarDP=1|49|0;BaseQRankSum=2.598;DP=51;MQRankSum=-0.663;QUALapprox=1613;RAW_GT_COUNT=0,0,1;RAW_MQandDP=164216,51;ReadPosRankSum=-1.560;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:1,49,0:50:99:1613,140,0,1616,147,1623:0,1,19,30 +chrX 3682261 . G . . END=3688136 GT:DP:GQ:MIN_DP:PL 0/0:57:31:45:0,31,1043 +chrX 3688137 . A . . END=3688137 GT:DP:GQ:MIN_DP:PL 0/0:67:13:67:0,13,1771 +chrX 3688138 . A . . END=3689698 GT:DP:GQ:MIN_DP:PL 0/0:54:54:54:0,54,986 +chrX 3689699 . T C, 1390.06 . AS_QUALapprox=|1404|0;AS_VarDP=0|44|0;DP=50;QUALapprox=1404;RAW_GT_COUNT=0,0,1;RAW_MQandDP=177536,50;VarDP=44 GT:AD:DP:GQ:PL:SB 1/1:0,44,0:44:99:1404,132,0,1404,132,1404:0,0,18,26 +chrX 3689700 . G . . END=3689724 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,107,1534 +chrX 3689725 . C T, 2002.06 . AS_QUALapprox=|2016|0;AS_VarDP=0|46|0;DP=47;QUALapprox=2016;RAW_GT_COUNT=0,0,1;RAW_MQandDP=163761,47;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,46,0:46:99:0|1:3689725_C_T:2016,138,0,2016,138,2016:3689725:0,0,25,21 +chrX 3689726 . C . . END=3689728 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,120,1800 +chrX 3689729 . A G, 1944.06 . AS_QUALapprox=|1958|0;AS_VarDP=0|44|0;DP=45;QUALapprox=1958;RAW_GT_COUNT=0,0,1;RAW_MQandDP=156561,45;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,44,0:44:99:0|1:3689725_C_T:1958,132,0,1958,132,1958:3689725:0,0,24,20 +chrX 3689730 . C . . END=3689803 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,115,1529 +chrX 3689804 . T C, 421.64 . AS_QUALapprox=|429|0;AS_VarDP=33|19|0;BaseQRankSum=-1.434;DP=53;MQRankSum=-1.853;QUALapprox=429;RAW_GT_COUNT=0,1,0;RAW_MQandDP=185361,53;ReadPosRankSum=-0.646;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:33,19,0:52:99:429,0,941,528,997,1526:18,15,12,7 +chrX 3689805 . G . . END=3689869 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 3689870 . A G, 1898.06 . AS_QUALapprox=|1912|0;AS_VarDP=0|58|0;DP=58;QUALapprox=1912;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205641,58;VarDP=58 GT:AD:DP:GQ:PL:SB 1/1:0,58,0:58:99:1912,174,0,1912,174,1912:0,0,30,28 +chrX 3689871 . G . . END=3689930 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 3689931 . G C, 748.64 . AS_QUALapprox=|756|0;AS_VarDP=33|21|0;BaseQRankSum=-1.383;DP=54;MQRankSum=-1.216;QUALapprox=756;RAW_GT_COUNT=0,1,0;RAW_MQandDP=191241,54;ReadPosRankSum=0.115;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:33,21,0:54:99:0|1:3689931_G_C:756,0,1312,855,1375,2230:3689931:18,15,11,10 +chrX 3689932 . G . . END=3689933 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 3689934 . A G, 748.64 . AS_QUALapprox=|756|0;AS_VarDP=33|21|0;BaseQRankSum=-0.688;DP=56;MQRankSum=-1.216;QUALapprox=756;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198441,56;ReadPosRankSum=-0.036;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:33,21,0:54:99:0|1:3689931_G_C:756,0,1312,855,1375,2230:3689931:18,15,11,10 +chrX 3689935 . C . . END=3690025 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,99,1687 +chrX 3690026 . T C, 1818.06 . AS_QUALapprox=|1832|0;AS_VarDP=0|63|0;DP=66;QUALapprox=1832;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=63 GT:AD:DP:GQ:PL:SB 1/1:0,63,0:63:99:1832,186,0,1832,186,1832:0,0,30,33 +chrX 3690027 . G . . END=3690447 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,102,1684 +chrX 3690448 . T C, 900.64 . AS_QUALapprox=|908|0;AS_VarDP=29|34|0;BaseQRankSum=0.277;DP=65;MQRankSum=0.000;QUALapprox=908;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=-0.414;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:29,34,0:63:99:908,0,749,995,850,1845:16,13,25,9 +chrX 3690449 . G . . END=3691177 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,110,1503 +chrX 3691178 . G A, 1987.06 . AS_QUALapprox=|2001|0;AS_VarDP=0|59|0;DP=61;QUALapprox=2001;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:2001,177,0,2001,177,2001:0,0,33,26 +chrX 3691179 . T . . END=3691429 GT:DP:GQ:MIN_DP:PL 0/0:46:22:42:0,22,990 +chrX 3691430 . CCCGGGGGAGTGGGCTACATTACATTCTACCTTCAAGAAAAATAACAATTTTTCGA C, 1380.03 . AS_QUALapprox=|1394|0;AS_VarDP=0|31|0;DP=37;QUALapprox=1394;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133200,37;VarDP=31 GT:AD:DP:GQ:PL:SB 1/1:0,31,0:31:97:1394,97,0,1394,97,1394:0,0,15,16 +chrX 3691486 . C . . END=3691497 GT:DP:GQ:MIN_DP:PL 0/0:33:21:32:0,21,315 +chrX 3691498 . T C, 1087.06 . AS_QUALapprox=|1101|0;AS_VarDP=0|34|0;DP=35;QUALapprox=1101;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=34 GT:AD:DP:GQ:PL:SB 1/1:0,34,0:34:99:1101,101,0,1101,101,1101:0,0,16,18 +chrX 3691499 . A . . END=3691849 GT:DP:GQ:MIN_DP:PL 0/0:37:21:34:0,21,315 +chrX 3691850 . A ATGAT, 1369.03 . AS_QUALapprox=|1383|0;AS_VarDP=1|41|0;BaseQRankSum=4.415;DP=52;MQRankSum=0.000;QUALapprox=1383;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;ReadPosRankSum=-1.651;VarDP=42 GT:AD:DP:GQ:PL:SB 1/1:1,41,0:42:99:1383,101,0,1387,123,1409:1,0,21,20 +chrX 3691851 . T . . END=3691865 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,112,1563 +chrX 3691866 . A . . END=3691866 GT:DP:GQ:MIN_DP:PL 0/0:50:11:50:0,11,1410 +chrX 3691867 . T . . END=3692074 GT:DP:GQ:MIN_DP:PL 0/0:47:78:47:0,78,1184 +chrX 3692075 . T . . END=3692075 GT:DP:GQ:MIN_DP:PL 0/0:37:6:37:0,6,936 +chrX 3692076 . G . . END=3692079 GT:DP:GQ:MIN_DP:PL 0/0:39:82:39:0,82,1081 +chrX 3692080 . T . . END=3692080 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,764 +chrX 3692081 . G . . END=3692083 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,117,1755 +chrX 3692084 . T . . END=3692084 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,643 +chrX 3692085 . G . . END=3692097 GT:DP:GQ:MIN_DP:PL 0/0:41:30:36:0,30,955 +chrX 3692098 . A . . END=3692098 GT:DP:GQ:MIN_DP:PL 0/0:33:17:33:0,17,821 +chrX 3692099 . G . . END=3692111 GT:DP:GQ:MIN_DP:PL 0/0:35:50:35:0,50,739 +chrX 3692112 . T . . END=3692112 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,496 +chrX 3692113 . G . . END=3692116 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,105,1575 +chrX 3692117 . A . . END=3692117 GT:DP:GQ:MIN_DP:PL 0/0:37:16:37:0,16,936 +chrX 3692118 . G . . END=3692240 GT:DP:GQ:MIN_DP:PL 0/0:47:86:47:0,86,1305 +chrX 3692241 . T G, 2434.06 . AS_QUALapprox=|2448|0;AS_VarDP=0|57|0;DP=57;QUALapprox=2448;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=57 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,57,0:57:99:0|1:3692241_T_G:2448,172,0,2448,172,2448:3692241:0,0,29,28 +chrX 3692242 . G . . END=3692262 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 3692263 . T C, 2456.06 . AS_QUALapprox=|2470|0;AS_VarDP=0|57|0;DP=60;QUALapprox=2470;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=57 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,57,0:57:99:0|1:3692241_T_G:2470,172,0,2470,172,2470:3692241:0,0,32,25 +chrX 3692264 . G . . END=3693702 GT:DP:GQ:MIN_DP:PL 0/0:59:76:59:0,76,1136 +chrX 3693703 . T C, 1633.06 . AS_QUALapprox=|1647|0;AS_VarDP=0|53|0;DP=53;QUALapprox=1647;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1647,159,0,1647,159,1647:0,0,24,29 +chrX 3693704 . G . . END=3693871 GT:DP:GQ:MIN_DP:PL 0/0:46:59:46:0,59,1032 +chrX 3693872 . G T, 282.64 . AS_QUALapprox=|290|0;AS_VarDP=19|12|0;BaseQRankSum=0.265;DP=34;MQRankSum=-0.063;QUALapprox=290;RAW_GT_COUNT=0,1,0;RAW_MQandDP=115371,34;ReadPosRankSum=-1.177;VarDP=31 GT:AD:DP:GQ:PL:SB 0/1:19,12,0:31:99:290,0,513,346,549,895:13,6,6,6 +chrX 3693873 . G . . END=3693938 GT:DP:GQ:MIN_DP:PL 0/0:27:54:27:0,54,810 +chrX 3693939 . C A, 1.22 . AS_QUALapprox=|8|0;AS_VarDP=25|4|0;BaseQRankSum=0.648;DP=40;MQRankSum=-2.268;QUALapprox=8;RAW_GT_COUNT=0,1,0;RAW_MQandDP=137349,40;ReadPosRankSum=2.121;VarDP=29 GT:AD:DP:GQ:PL:SB 0/1:25,4,0:29:8:8,0,762,83,774,857:20,5,0,4 +chrX 3693940 . A . . END=3694001 GT:DP:GQ:MIN_DP:PL 0/0:54:38:54:0,38,1167 +chrX 3694002 . T . . END=3694002 GT:DP:GQ:MIN_DP:PL 0/0:52:19:52:0,19,1252 +chrX 3694003 . C . . END=3694039 GT:DP:GQ:MIN_DP:PL 0/0:51:95:51:0,95,1395 +chrX 3694040 . A G, 1450.06 . AS_QUALapprox=|1464|0;AS_VarDP=0|44|0;DP=47;QUALapprox=1464;RAW_GT_COUNT=0,0,1;RAW_MQandDP=168625,47;VarDP=44 GT:AD:DP:GQ:PL:SB 1/1:0,44,0:44:99:1464,132,0,1464,132,1464:0,0,26,18 +chrX 3694041 . A . . END=3694160 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,99,1343 +chrX 3694161 . T C, 1697.06 . AS_QUALapprox=|1711|0;AS_VarDP=0|56|0;DP=57;QUALapprox=1711;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201515,57;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1711,167,0,1711,167,1711:0,0,26,30 +chrX 3694162 . G . . END=3694229 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,114,1710 +chrX 3694230 . T C, 1510.06 . AS_QUALapprox=|1524|0;AS_VarDP=0|45|0;DP=46;QUALapprox=1524;RAW_GT_COUNT=0,0,1;RAW_MQandDP=161915,46;VarDP=45 GT:AD:DP:GQ:PL:SB 1/1:0,45,0:45:99:1524,135,0,1524,135,1524:0,0,23,22 +chrX 3694231 . A . . END=3694382 GT:DP:GQ:MIN_DP:PL 0/0:58:43:58:0,43,1420 +chrX 3694383 . A G, 1944.06 . AS_QUALapprox=|1958|0;AS_VarDP=0|64|0;DP=67;QUALapprox=1958;RAW_GT_COUNT=0,0,1;RAW_MQandDP=239281,67;VarDP=64 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:1958,191,0,1958,191,1958:0,0,25,39 +chrX 3694384 . T . . END=3694420 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 3694421 . T A, 2006.06 . AS_QUALapprox=|2020|0;AS_VarDP=0|62|0;DP=62;QUALapprox=2020;RAW_GT_COUNT=0,0,1;RAW_MQandDP=220304,62;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:0,62,0:62:99:2020,185,0,2020,185,2020:0,0,34,28 +chrX 3694422 . A . . END=3694504 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,112,1344 +chrX 3694505 . T C, 1500.06 . AS_QUALapprox=|1514|0;AS_VarDP=0|47|0;DP=47;QUALapprox=1514;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1514,141,0,1514,141,1514:0,0,32,15 +chrX 3694506 . A . . END=3694803 GT:DP:GQ:MIN_DP:PL 0/0:55:92:55:0,92,1435 +chrX 3694804 . T C, 1479.06 . AS_QUALapprox=|1493|0;AS_VarDP=0|47|0;DP=48;QUALapprox=1493;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169729,48;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1493,141,0,1493,141,1493:0,0,24,23 +chrX 3694805 . G . . END=3695149 GT:DP:GQ:MIN_DP:PL 0/0:53:85:53:0,85,1459 +chrX 3695150 . T C, 1827.06 . AS_QUALapprox=|1841|0;AS_VarDP=0|57|0;DP=60;QUALapprox=1841;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1841,170,0,1841,170,1841:0,0,28,29 +chrX 3695151 . G . . END=3695160 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 3695161 . C T, 1802.06 . AS_QUALapprox=|1816|0;AS_VarDP=0|55|0;DP=56;QUALapprox=1816;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1816,165,0,1816,165,1816:0,0,28,27 +chrX 3695162 . C . . END=3695181 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 3695182 . T C, 1708.06 . AS_QUALapprox=|1722|0;AS_VarDP=0|52|0;DP=53;QUALapprox=1722;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1722,156,0,1722,156,1722:0,0,28,24 +chrX 3695183 . G . . END=3695531 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,111,1665 +chrX 3695532 . C A,T, 1930.06 . AS_QUALapprox=|1944|34|0;AS_VarDP=0|60|3|0;DP=66;QUALapprox=1944;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234961,66;VarDP=63 GT:AD:DP:GQ:PL:SB 1/1:0,60,3,0:63:99:1944,180,0,1911,147,1910,1947,182,1918,1954:0,0,28,35 +chrX 3695533 . C . . END=3695714 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 3695715 . T C, 1964.06 . AS_QUALapprox=|1978|0;AS_VarDP=2|62|0;BaseQRankSum=2.791;DP=67;MQRankSum=0.000;QUALapprox=1978;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;ReadPosRankSum=-1.544;VarDP=64 GT:AD:DP:GQ:PL:SB 1/1:2,62,0:64:99:1978,142,0,1984,186,2027:1,1,30,32 +chrX 3695716 . T . . END=3695849 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 3695850 . G C, 2011.06 . AS_QUALapprox=|2025|0;AS_VarDP=0|60|0;DP=63;QUALapprox=2025;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:2025,180,0,2025,180,2025:0,0,28,32 +chrX 3695851 . T . . END=3696044 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,102,1577 +chrX 3696045 . G A, 1940.06 . AS_QUALapprox=|1954|0;AS_VarDP=0|60|0;DP=62;QUALapprox=1954;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:1954,180,0,1954,180,1954:0,0,27,33 +chrX 3696046 . T . . END=3696585 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,102,1391 +chrX 3696586 . G C, 1557.06 . AS_QUALapprox=|1571|0;AS_VarDP=0|51|0;DP=52;QUALapprox=1571;RAW_GT_COUNT=0,0,1;RAW_MQandDP=186516,52;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1571,152,0,1571,152,1571:0,0,25,26 +chrX 3696587 . C . . END=3696745 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 3696746 . G A, 2173.06 . AS_QUALapprox=|2187|0;AS_VarDP=0|68|0;DP=72;QUALapprox=2187;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;VarDP=68 GT:AD:DP:GQ:PL:SB 1/1:0,68,0:68:99:2187,204,0,2187,204,2187:0,0,39,29 +chrX 3696747 . C . . END=3696776 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 3696777 . C T, 2089.06 . AS_QUALapprox=|2103|0;AS_VarDP=0|67|0;DP=72;QUALapprox=2103;RAW_GT_COUNT=0,0,1;RAW_MQandDP=257625,72;VarDP=67 GT:AD:DP:GQ:PL:SB 1/1:0,67,0:67:99:2103,199,0,2103,199,2103:0,0,38,29 +chrX 3696778 . G . . END=3697006 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,108,1788 +chrX 3697007 . A G, 1601.06 . AS_QUALapprox=|1615|0;AS_VarDP=0|51|0;DP=54;QUALapprox=1615;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1615,153,0,1615,153,1615:0,0,25,26 +chrX 3697008 . A . . END=3697045 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,111,1310 +chrX 3697046 . GACAA G, 1763.03 . AS_QUALapprox=|1777|0;AS_VarDP=0|41|0;DP=44;QUALapprox=1777;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158400,44;VarDP=41 GT:AD:DP:GQ:PL:SB 1/1:0,41,0:41:99:1777,123,0,1777,123,1777:0,0,21,20 +chrX 3697051 . A . . END=3697265 GT:DP:GQ:MIN_DP:PL 0/0:45:38:44:0,38,1250 +chrX 3697266 . C T, 1574.06 . AS_QUALapprox=|1588|0;AS_VarDP=0|48|0;DP=49;QUALapprox=1588;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=48 GT:AD:DP:GQ:PL:SB 1/1:0,48,0:48:99:1588,144,0,1588,144,1588:0,0,20,28 +chrX 3697267 . G . . END=3697719 GT:DP:GQ:MIN_DP:PL 0/0:49:59:49:0,59,1062 +chrX 3697720 . G T, 1836.06 . AS_QUALapprox=|1850|0;AS_VarDP=0|42|0;DP=42;QUALapprox=1850;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151200,42;VarDP=42 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,42,0:42:99:0|1:3697720_G_T:1850,126,0,1850,126,1850:3697720:0,0,28,14 +chrX 3697721 . T G, 1836.06 . AS_QUALapprox=|1850|0;AS_VarDP=0|42|0;DP=43;QUALapprox=1850;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154800,43;VarDP=42 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,42,0:42:99:0|1:3697720_G_T:1850,126,0,1850,126,1850:3697720:0,0,28,14 +chrX 3697722 . T . . END=3697754 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 3697755 . C T, 2283.06 . AS_QUALapprox=|2297|0;AS_VarDP=0|53|0;DP=54;QUALapprox=2297;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,53,0:53:99:0|1:3697755_C_T:2297,159,0,2297,159,2297:3697755:0,0,34,19 +chrX 3697756 . G . . END=3697766 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 3697767 . C T, 2273.06 . AS_QUALapprox=|2287|0;AS_VarDP=0|52|0;DP=53;QUALapprox=2287;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,52,0:52:99:0|1:3697755_C_T:2287,157,0,2287,157,2287:3697755:0,0,31,21 +chrX 3697768 . G . . END=3699851 GT:DP:GQ:MIN_DP:PL 0/0:58:40:58:0,40,1187 +chrX 3699852 . A G, 1587.06 . AS_QUALapprox=|1601|0;AS_VarDP=0|52|0;DP=54;QUALapprox=1601;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1601,155,0,1601,155,1601:0,0,28,24 +chrX 3699853 . C . . END=3700090 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 3700091 . A C, 2130.06 . AS_QUALapprox=|2144|0;AS_VarDP=0|67|0;DP=67;QUALapprox=2144;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=67 GT:AD:DP:GQ:PL:SB 1/1:0,67,0:67:99:2144,201,0,2144,201,2144:0,0,37,30 +chrX 3700092 . A . . END=3700748 GT:DP:GQ:MIN_DP:PL 0/0:59:32:57:0,32,1410 +chrX 3700749 . T TTTGTTGTTG, 806.60 . AS_QUALapprox=|814|0;AS_VarDP=24|22|0;BaseQRankSum=1.340;DP=57;MQRankSum=0.000;QUALapprox=814;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-0.748;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:24,22,0:46:99:814,0,920,888,986,1874:9,15,10,12 +chrX 3700750 . T . . END=3701110 GT:DP:GQ:MIN_DP:PL 0/0:57:26:55:0,26,1564 +chrX 3701111 . TC T, 986.60 . AS_QUALapprox=|994|0;AS_VarDP=14|32|0;BaseQRankSum=1.643;DP=51;MQRankSum=0.000;QUALapprox=994;RAW_GT_COUNT=0,1,0;RAW_MQandDP=182500,51;ReadPosRankSum=0.884;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:14,32,0:46:99:994,0,352,1036,448,1483:8,6,18,14 +chrX 3701113 . C . . END=3701273 GT:DP:GQ:MIN_DP:PL 0/0:60:56:60:0,56,1170 +chrX 3701274 . G . . END=3701274 GT:DP:GQ:MIN_DP:PL 0/0:65:0:65:0,0,1772 +chrX 3701275 . A ATTTT, 1489.60 . AS_QUALapprox=|1497|0;AS_VarDP=24|38|0;BaseQRankSum=0.928;DP=68;MQRankSum=0.000;QUALapprox=1497;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=-0.680;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:24,38,0:62:99:1497,0,890,1570,1005,2574:12,12,20,18 +chrX 3701276 . T . . END=3703667 GT:DP:GQ:MIN_DP:PL 0/0:59:59:59:0,59,1052 +chrX 3703668 . TG T, 316.60 . AS_QUALapprox=|324|0;AS_VarDP=36|16|0;BaseQRankSum=-0.829;DP=55;MQRankSum=-0.226;QUALapprox=324;RAW_GT_COUNT=0,1,0;RAW_MQandDP=142417,55;ReadPosRankSum=-1.547;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:36,16,0:52:99:0|1:3703668_TG_T:324,0,985,432,1033,1465:3703668:15,21,6,10 +chrX 3703669 . GT G,*, 22 . AS_QUALapprox=|183|0|0;AS_VarDP=11|12|16|0;BaseQRankSum=-1.156;DP=54;MQRankSum=-3.441;QUALapprox=374;RAW_GT_COUNT=0,0,1;RAW_MQandDP=138817,54;ReadPosRankSum=0.078;VarDP=39 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|2:11,12,16,0:39:32:1|0:3703668_TG_T:374,191,364,32,0,771,468,450,565,940:3703668:6,5,9,19 +chrX 3703671 . T . . END=3703688 GT:DP:GQ:MIN_DP:PL 0/0:62:67:62:0,67,1530 +chrX 3703689 . G . . END=3703689 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1286 +chrX 3703690 . A . . END=3703868 GT:DP:GQ:MIN_DP:PL 0/0:49:32:47:0,32,1244 +chrX 3703869 . T C, 817.64 . AS_QUALapprox=|825|0;AS_VarDP=23|31|0;BaseQRankSum=-0.968;DP=56;MQRankSum=-1.498;QUALapprox=825;RAW_GT_COUNT=0,1,0;RAW_MQandDP=197534,56;ReadPosRankSum=1.470;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:23,31,0:54:99:825,0,596,894,689,1583:10,13,16,15 +chrX 3703870 . G . . END=3703891 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 3703892 . C T, 808.64 . AS_QUALapprox=|816|0;AS_VarDP=22|30|0;BaseQRankSum=-0.432;DP=55;MQRankSum=0.000;QUALapprox=816;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=1.139;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:22,30,0:52:99:816,0,568,883,658,1541:8,14,18,12 +chrX 3703893 . G . . END=3704744 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,105,1540 +chrX 3704745 . C T, 772.64 . AS_QUALapprox=|780|0;AS_VarDP=27|29|0;BaseQRankSum=-0.191;DP=60;MQRankSum=-0.929;QUALapprox=780;RAW_GT_COUNT=0,1,0;RAW_MQandDP=214640,60;ReadPosRankSum=-0.607;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:27,29,0:56:99:780,0,720,861,807,1668:14,13,15,14 +chrX 3704746 . A . . END=3705690 GT:DP:GQ:MIN_DP:PL 0/0:59:91:59:0,91,1694 +chrX 3705691 . C CT, 517.60 . AS_QUALapprox=|525|0;AS_VarDP=23|26|0;BaseQRankSum=2.527;DP=63;MQRankSum=-1.315;QUALapprox=525;RAW_GT_COUNT=0,1,0;RAW_MQandDP=224197,63;ReadPosRankSum=-0.742;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:23,26,0:49:99:525,0,452,594,530,1124:8,15,12,14 +chrX 3705692 . T . . END=3706001 GT:DP:GQ:MIN_DP:PL 0/0:56:43:56:0,43,1124 +chrX 3706002 . TA T, 204.60 . AS_QUALapprox=|212|0;AS_VarDP=21|13|0;BaseQRankSum=1.900;DP=42;MQRankSum=0.000;QUALapprox=212;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151200,42;ReadPosRankSum=0.390;VarDP=34 GT:AD:DP:GQ:PL:SB 0/1:21,13,0:34:99:212,0,398,274,437,711:10,11,9,4 +chrX 3706004 . A . . END=3706645 GT:DP:GQ:MIN_DP:PL 0/0:58:88:58:0,88,1254 +chrX 3706646 . G C, 989.64 . AS_QUALapprox=|997|0;AS_VarDP=24|37|0;BaseQRankSum=0.775;DP=61;MQRankSum=0.000;QUALapprox=997;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=1.248;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:24,37,0:61:99:997,0,556,1069,667,1736:11,13,20,17 +chrX 3706647 . G . . END=3707330 GT:DP:GQ:MIN_DP:PL 0/0:59:59:59:0,59,1500 +chrX 3707331 . C T, 549.64 . AS_QUALapprox=|557|0;AS_VarDP=29|22|0;BaseQRankSum=-0.331;DP=53;MQRankSum=-2.654;QUALapprox=557;RAW_GT_COUNT=0,1,0;RAW_MQandDP=182863,53;ReadPosRankSum=0.970;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:29,22,0:51:99:557,0,786,643,851,1495:19,10,11,11 +chrX 3707332 . T . . END=3707556 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,110,1643 +chrX 3707557 . T C, 804.64 . AS_QUALapprox=|812|0;AS_VarDP=30|32|0;BaseQRankSum=-0.584;DP=65;MQRankSum=-2.679;QUALapprox=812;RAW_GT_COUNT=0,1,0;RAW_MQandDP=222296,65;ReadPosRankSum=1.839;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:30,32,0:62:99:812,0,793,902,888,1789:10,20,14,18 +chrX 3707558 . C . . END=3709180 GT:DP:GQ:MIN_DP:PL 0/0:35:30:33:0,30,928 +chrX 3709181 . C . . END=3709182 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,811 +chrX 3709183 . C CA, 184.60 . AS_QUALapprox=|192|0;AS_VarDP=11|14|0;BaseQRankSum=-0.268;DP=45;MQRankSum=-1.221;QUALapprox=192;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158249,45;ReadPosRankSum=-0.850;VarDP=25 GT:AD:DP:GQ:PL:SB 0/1:11,14,0:25:99:192,0,128,223,169,392:5,6,4,10 +chrX 3709184 . A . . END=3709372 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,99,1465 +chrX 3709373 . A G, 947.64 . AS_QUALapprox=|955|0;AS_VarDP=24|35|0;BaseQRankSum=-0.627;DP=62;MQRankSum=0.000;QUALapprox=955;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=2.130;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:24,35,0:59:99:955,0,598,1026,703,1728:10,14,19,16 +chrX 3709374 . T . . END=3710385 GT:DP:GQ:MIN_DP:PL 0/0:66:90:66:0,90,1405 +chrX 3710386 . T C, 713.64 . AS_QUALapprox=|721|0;AS_VarDP=22|27|0;BaseQRankSum=-0.148;DP=52;MQRankSum=0.000;QUALapprox=721;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=-1.760;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:22,27,0:49:99:721,0,553,786,634,1420:12,10,13,14 +chrX 3710387 . G . . END=3710766 GT:DP:GQ:MIN_DP:PL 0/0:59:90:59:0,90,1689 +chrX 3710767 . C T, 774.64 . AS_QUALapprox=|782|0;AS_VarDP=35|28|0;BaseQRankSum=2.698;DP=66;MQRankSum=0.926;QUALapprox=782;RAW_GT_COUNT=0,1,0;RAW_MQandDP=236704,66;ReadPosRankSum=1.709;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:35,28,0:63:99:782,0,947,887,1031,1919:14,21,14,14 +chrX 3710768 . T . . END=3710800 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 3710801 . G C, 791.64 . AS_QUALapprox=|799|0;AS_VarDP=31|30|0;BaseQRankSum=-1.115;DP=63;MQRankSum=0.000;QUALapprox=799;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=-0.354;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:31,30,0:61:99:799,0,864,893,954,1847:15,16,11,19 +chrX 3710802 . A . . END=3711838 GT:DP:GQ:MIN_DP:PL 0/0:57:97:57:0,97,1190 +chrX 3711839 . T A, 522.64 . AS_QUALapprox=|530|0;AS_VarDP=21|19|0;BaseQRankSum=2.980;DP=45;MQRankSum=0.000;QUALapprox=530;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=-0.407;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:21,19,0:40:99:530,0,493,592,550,1143:11,10,7,12 +chrX 3711840 . T . . END=3711876 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,111,1340 +chrX 3711877 . G C, 483.64 . AS_QUALapprox=|491|0;AS_VarDP=28|20|0;BaseQRankSum=-0.284;DP=49;MQRankSum=0.000;QUALapprox=491;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=-0.523;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:28,20,0:48:99:491,0,744,575,804,1379:15,13,8,12 +chrX 3711878 . A . . END=3712724 GT:DP:GQ:MIN_DP:PL 0/0:55:33:52:0,33,1144 +chrX 3712725 . C T, 583.64 . AS_QUALapprox=|591|0;AS_VarDP=33|23|0;BaseQRankSum=0.865;DP=60;MQRankSum=0.000;QUALapprox=591;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=0.008;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:33,23,0:56:99:591,0,888,690,958,1648:13,20,13,10 +chrX 3712726 . A . . END=3713125 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 3713126 . A G, 977.64 . AS_QUALapprox=|985|0;AS_VarDP=32|35|0;BaseQRankSum=0.127;DP=69;MQRankSum=0.000;QUALapprox=985;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=0.119;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:32,35,0:67:99:985,0,881,1081,986,2067:18,14,14,21 +chrX 3713127 . C . . END=3713481 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,107,1378 +chrX 3713482 . G A, 682.64 . AS_QUALapprox=|690|0;AS_VarDP=31|27|0;BaseQRankSum=0.562;DP=59;MQRankSum=0.000;QUALapprox=690;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-0.569;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:31,27,0:58:99:690,0,799,783,879,1662:20,11,18,9 +chrX 3713483 . G . . END=3713578 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 3713579 . G C, 785.64 . AS_QUALapprox=|793|0;AS_VarDP=29|21|0;BaseQRankSum=0.156;DP=52;MQRankSum=0.000;QUALapprox=793;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=1.888;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,21,0:50:99:0|1:3713579_G_C:793,0,1144,880,1207,2088:3713579:14,15,11,10 +chrX 3713580 . G . . END=3713580 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 3713581 . G T, 785.64 . AS_QUALapprox=|793|0;AS_VarDP=29|21|0;BaseQRankSum=-1.655;DP=51;MQRankSum=0.000;QUALapprox=793;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=1.597;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,21,0:50:99:0|1:3713579_G_C:793,0,1144,880,1207,2088:3713579:14,15,11,10 +chrX 3713582 . T . . END=3713919 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,115,1549 +chrX 3713920 . C T, 759.64 . AS_QUALapprox=|767|0;AS_VarDP=32|30|0;BaseQRankSum=-1.064;DP=65;MQRankSum=0.000;QUALapprox=767;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=0.444;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:32,30,0:62:99:767,0,831,862,921,1784:16,16,14,16 +chrX 3713921 . G . . END=3714926 GT:DP:GQ:MIN_DP:PL 0/0:56:88:56:0,88,1107 +chrX 3714927 . C T, 602.64 . AS_QUALapprox=|610|0;AS_VarDP=30|23|0;BaseQRankSum=-0.327;DP=55;MQRankSum=0.000;QUALapprox=610;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-1.355;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:30,23,0:53:99:610,0,852,700,922,1622:17,13,10,13 +chrX 3714928 . G . . END=3716753 GT:DP:GQ:MIN_DP:PL 0/0:58:52:58:0,52,1126 +chrX 3716754 . C T, 897.64 . AS_QUALapprox=|905|0;AS_VarDP=17|32|0;BaseQRankSum=-0.078;DP=51;MQRankSum=-0.686;QUALapprox=905;RAW_GT_COUNT=0,1,0;RAW_MQandDP=182704,51;ReadPosRankSum=-1.418;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:17,32,0:49:99:905,0,414,956,510,1466:7,10,17,15 +chrX 3716755 . C . . END=3717049 GT:DP:GQ:MIN_DP:PL 0/0:57:98:57:0,98,1504 +chrX 3717050 . ATG A, 852.60 . AS_QUALapprox=|860|0;AS_VarDP=27|26|0;BaseQRankSum=2.040;DP=58;MQRankSum=0.000;QUALapprox=860;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=0.080;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:27,26,0:53:99:860,0,862,941,940,1882:14,13,13,13 +chrX 3717053 . T . . END=3717497 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,101,1499 +chrX 3717498 . T C, 1106.64 . AS_QUALapprox=|1114|0;AS_VarDP=35|30|0;BaseQRankSum=-0.169;DP=67;MQRankSum=0.000;QUALapprox=1114;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=0.680;VarDP=65 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:35,30,0:65:99:0|1:3717498_T_C:1114,0,1277,1219,1367,2586:3717498:12,23,15,15 +chrX 3717499 . G . . END=3717513 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 3717514 . G A, 1083.64 . AS_QUALapprox=|1091|0;AS_VarDP=32|29|0;BaseQRankSum=-0.372;DP=63;MQRankSum=0.000;QUALapprox=1091;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=1.399;VarDP=61 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:32,29,0:61:99:0|1:3717498_T_C:1091,0,1180,1187,1267,2454:3717498:11,21,13,16 +chrX 3717515 . G . . END=3718283 GT:DP:GQ:MIN_DP:PL 0/0:60:80:60:0,80,1533 +chrX 3718284 . T C, 863.64 . AS_QUALapprox=|871|0;AS_VarDP=28|32|0;BaseQRankSum=-1.296;DP=63;MQRankSum=0.000;QUALapprox=871;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=1.030;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:28,32,0:60:99:871,0,772,955,868,1823:15,13,15,17 +chrX 3718285 . G . . END=3719092 GT:DP:GQ:MIN_DP:PL 0/0:64:90:64:0,90,1350 +chrX 3719093 . C . . END=3719093 GT:DP:GQ:MIN_DP:PL 0/0:38:15:38:0,15,983 +chrX 3719094 . A . . END=3719242 GT:DP:GQ:MIN_DP:PL 0/0:54:86:54:0,86,1310 +chrX 3719243 . G A, 1079.64 . AS_QUALapprox=|1087|0;AS_VarDP=20|41|0;BaseQRankSum=-1.416;DP=64;MQRankSum=0.000;QUALapprox=1087;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=-0.315;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:20,41,0:61:99:1087,0,463,1147,586,1733:12,8,27,14 +chrX 3719244 . G . . END=3719509 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 3719510 . A G, 1029.64 . AS_QUALapprox=|1037|0;AS_VarDP=22|39|0;BaseQRankSum=-2.863;DP=62;MQRankSum=0.000;QUALapprox=1037;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=-1.435;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:22,39,0:61:99:1037,0,582,1103,699,1802:16,6,15,24 +chrX 3719511 . A . . END=3720563 GT:DP:GQ:MIN_DP:PL 0/0:60:78:60:0,78,1291 +chrX 3720564 . C G, 443.64 . AS_QUALapprox=|451|0;AS_VarDP=20|18|0;BaseQRankSum=-1.718;DP=40;MQRankSum=0.000;QUALapprox=451;RAW_GT_COUNT=0,1,0;RAW_MQandDP=144000,40;ReadPosRankSum=1.579;VarDP=38 GT:AD:DP:GQ:PL:SB 0/1:20,18,0:38:99:451,0,561,511,615,1127:11,9,8,10 +chrX 3720565 . A . . END=3720590 GT:DP:GQ:MIN_DP:PL 0/0:39:88:39:0,88,1157 +chrX 3720591 . T G, 489.64 . AS_QUALapprox=|497|0;AS_VarDP=18|18|0;BaseQRankSum=-1.395;DP=38;MQRankSum=0.000;QUALapprox=497;RAW_GT_COUNT=0,1,0;RAW_MQandDP=136800,38;ReadPosRankSum=-0.016;VarDP=36 GT:AD:DP:GQ:PL:SB 0/1:18,18,0:36:99:497,0,514,552,569,1120:8,10,10,8 +chrX 3720592 . T . . END=3720820 GT:DP:GQ:MIN_DP:PL 0/0:52:88:52:0,88,1255 +chrX 3720821 . ATGTGGGAAAGCAAAAACG A, 459.60 . AS_QUALapprox=|467|0;AS_VarDP=27|13|0;BaseQRankSum=1.414;DP=53;MQRankSum=0.000;QUALapprox=467;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=-0.798;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:27,13,0:40:99:467,0,1072,548,1113,1661:12,15,5,8 +chrX 3720840 . T . . END=3721006 GT:DP:GQ:MIN_DP:PL 0/0:46:62:46:0,62,1225 +chrX 3721007 . T C, 647.64 . AS_QUALapprox=|655|0;AS_VarDP=27|26|0;BaseQRankSum=0.083;DP=53;MQRankSum=0.000;QUALapprox=655;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=-0.133;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:27,26,0:53:99:655,0,710,736,787,1523:15,12,13,13 +chrX 3721008 . G . . END=3721202 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 3721203 . T C, 658.64 . AS_QUALapprox=|666|0;AS_VarDP=29|25|0;BaseQRankSum=-0.211;DP=55;MQRankSum=0.000;QUALapprox=666;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=0.017;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:29,25,0:54:99:666,0,805,753,880,1634:20,9,16,9 +chrX 3721204 . G . . END=3721451 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 3721452 . A G, 486.64 . AS_QUALapprox=|494|0;AS_VarDP=34|20|0;BaseQRankSum=-0.572;DP=59;MQRankSum=0.000;QUALapprox=494;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-0.287;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:34,20,0:54:99:494,0,995,597,1054,1651:19,15,13,7 +chrX 3721453 . A . . END=3721627 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 3721628 . C A, 990.64 . AS_QUALapprox=|998|0;AS_VarDP=36|37|0;BaseQRankSum=1.394;DP=76;MQRankSum=0.000;QUALapprox=998;RAW_GT_COUNT=0,1,0;RAW_MQandDP=273600,76;ReadPosRankSum=-1.507;VarDP=73 GT:AD:DP:GQ:PL:SB 0/1:36,37,0:73:99:998,0,877,1105,988,2093:9,27,18,19 +chrX 3721629 . G . . END=3724053 GT:DP:GQ:MIN_DP:PL 0/0:56:78:56:0,78,1390 +chrX 3724054 . G . . END=3724054 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,1172 +chrX 3724055 . A . . END=3724914 GT:DP:GQ:MIN_DP:PL 0/0:59:90:59:0,90,1245 +chrX 3724915 . C . . END=3724915 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,1146 +chrX 3724916 . A . . END=3733949 GT:DP:GQ:MIN_DP:PL 0/0:58:34:36:0,34,938 +chrX 3733950 . G A, 813.64 . AS_QUALapprox=|821|0;AS_VarDP=26|30|0;BaseQRankSum=2.128;DP=58;MQRankSum=0.000;QUALapprox=821;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=1.192;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:26,30,0:56:99:821,0,591,898,681,1579:15,11,11,19 +chrX 3733951 . G . . END=3737944 GT:DP:GQ:MIN_DP:PL 0/0:36:33:32:0,33,943 +chrX 3737945 . C T, 716.64 . AS_QUALapprox=|724|0;AS_VarDP=37|28|0;BaseQRankSum=0.201;DP=67;MQRankSum=0.000;QUALapprox=724;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=0.027;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:37,28,0:65:99:724,0,1016,834,1100,1934:18,19,14,14 +chrX 3737946 . C . . END=3740446 GT:DP:GQ:MIN_DP:PL 0/0:41:21:25:0,21,728 +chrX 3740447 . G . . END=3740447 GT:DP:GQ:MIN_DP:PL 0/0:27:17:27:0,17,730 +chrX 3740448 . A . . END=3740465 GT:DP:GQ:MIN_DP:PL 0/0:27:33:23:0,33,737 +chrX 3740466 . T . . END=3740466 GT:DP:GQ:MIN_DP:PL 0/0:22:0:22:0,0,565 +chrX 3740467 . C A, 278.64 . AS_QUALapprox=|286|0;AS_VarDP=20|21|0;BaseQRankSum=0.798;DP=51;MQRankSum=1.848;QUALapprox=286;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176013,51;ReadPosRankSum=3.379;VarDP=41 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:20,21,0:41:99:1|0:3740464_T_G:286,0,462,344,523,866:3740464:13,7,1,20 +chrX 3740468 . A . . END=3740816 GT:DP:GQ:MIN_DP:PL 0/0:40:36:38:0,36,1091 +chrX 3740817 . T . . END=3740819 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,741 +chrX 3740820 . C CAAA,CAAAAA, 72.60 . AS_QUALapprox=|0|80|0;AS_VarDP=12|1|7|0;DP=46;MQRankSum=0.000;QUALapprox=80;RAW_GT_COUNT=0,1,0;RAW_MQandDP=161780,46;ReadPosRankSum=-3.599;VarDP=20 GT:AD:DP:GQ:PL:SB 0/2:12,1,7,0:20:80:80,151,975,0,439,480,164,799,495,804:10,2,1,7 +chrX 3740821 . A . . END=3740841 GT:DP:GQ:MIN_DP:PL 0/0:41:84:41:0,84,1260 +chrX 3740842 . A . . END=3740842 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,958 +chrX 3740843 . G A,GAAAA, 1536.99 . AS_QUALapprox=|585|1794|0;AS_VarDP=0|3|37|0;DP=50;QUALapprox=1794;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176180,50;VarDP=40 GT:AD:DP:GQ:PL:SB 2/2:0,3,37,0:40:76:1794,1288,1209,122,76,0,1567,1268,111,1552:0,0,17,21 +chrX 3740844 . A . . END=3740872 GT:DP:GQ:MIN_DP:PL 0/0:47:26:45:0,26,1104 +chrX 3740873 . G . . END=3740873 GT:DP:GQ:MIN_DP:PL 0/0:56:19:56:0,19,1336 +chrX 3740874 . A . . END=3741824 GT:DP:GQ:MIN_DP:PL 0/0:57:37:54:0,37,1243 +chrX 3741825 . T C, 557.64 . AS_QUALapprox=|565|0;AS_VarDP=27|21|0;BaseQRankSum=1.445;DP=51;MQRankSum=0.000;QUALapprox=565;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-0.603;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:27,21,0:48:99:565,0,724,647,787,1434:13,14,15,6 +chrX 3741826 . A . . END=3743536 GT:DP:GQ:MIN_DP:PL 0/0:53:52:53:0,52,800 +chrX 3743537 . C . . END=3743537 GT:DP:GQ:MIN_DP:PL 0/0:25:1:25:0,1,630 +chrX 3743538 . T . . END=3743538 GT:DP:GQ:MIN_DP:PL 0/0:26:60:26:0,60,900 +chrX 3743539 . C . . END=3743539 GT:DP:GQ:MIN_DP:PL 0/0:29:0:29:0,0,372 +chrX 3743540 . A . . END=3743805 GT:DP:GQ:MIN_DP:PL 0/0:27:32:26:0,32,495 +chrX 3743806 . A C,ATC, 590.97 . AS_QUALapprox=|622|0|0;AS_VarDP=0|16|0|0;DP=29;QUALapprox=622;RAW_GT_COUNT=0,0,1;RAW_MQandDP=102096,29;VarDP=16 GT:AD:DP:GQ:PL:SB 1/1:0,16,0,0:16:49:622,49,0,638,63,787,640,60,750,751:0,0,6,8 +chrX 3743807 . T . . END=3743809 GT:DP:GQ:MIN_DP:PL 0/0:27:48:27:0,48,720 +chrX 3743810 . A C, 363.52 . AS_QUALapprox=|371|0;AS_VarDP=13|11|0;BaseQRankSum=0.287;DP=32;MQRankSum=0.000;QUALapprox=371;RAW_GT_COUNT=0,1,0;RAW_MQandDP=112896,32;ReadPosRankSum=0.534;VarDP=24 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:13,11,0:24:99:0|1:3743810_A_C:371,0,491,397,541,1028:3743810:6,7,5,4 +chrX 3743811 . T . . END=3743835 GT:DP:GQ:MIN_DP:PL 0/0:32:54:32:0,54,810 +chrX 3743836 . C A, 248.04 . AS_QUALapprox=|301|0;AS_VarDP=17|10|0;BaseQRankSum=1.327;DP=38;MQRankSum=0.000;QUALapprox=301;RAW_GT_COUNT=0,1,0;RAW_MQandDP=134496,38;ReadPosRankSum=1.330;VarDP=27 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:17,10,0:27:99:1|0:3743810_A_C:301,0,580,306,625,1007:3743810:8,9,1,5 +chrX 3743837 . T . . END=3746973 GT:DP:GQ:MIN_DP:PL 0/0:57:51:57:0,51,999 +chrX 3746974 . T C, 382.64 . AS_QUALapprox=|390|0;AS_VarDP=25|17|0;BaseQRankSum=-0.780;DP=47;MQRankSum=0.000;QUALapprox=390;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=1.705;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:25,17,0:42:99:390,0,668,465,719,1184:15,10,9,8 +chrX 3746975 . G . . END=3747399 GT:DP:GQ:MIN_DP:PL 0/0:51:38:49:0,38,1303 +chrX 3747400 . A G, 528.64 . AS_QUALapprox=|536|0;AS_VarDP=25|22|0;BaseQRankSum=-1.665;DP=50;MQRankSum=-1.023;QUALapprox=536;RAW_GT_COUNT=0,1,0;RAW_MQandDP=177881,50;ReadPosRankSum=0.192;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:25,22,0:47:99:536,0,697,611,762,1373:14,11,12,10 +chrX 3747401 . A . . END=3747422 GT:DP:GQ:MIN_DP:PL 0/0:48:85:48:0,85,1250 +chrX 3747423 . A AAAAAAAAG, 1028.60 . AS_QUALapprox=|1036|0;AS_VarDP=27|27|0;BaseQRankSum=0.628;DP=56;MQRankSum=-0.952;QUALapprox=1036;RAW_GT_COUNT=0,1,0;RAW_MQandDP=193910,56;ReadPosRankSum=-0.988;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:27,27,0:54:99:1036,0,876,1116,957,2074:14,13,17,10 +chrX 3747424 . A . . END=3747459 GT:DP:GQ:MIN_DP:PL 0/0:54:46:54:0,46,1316 +chrX 3747460 . GAAA G, 1182.60 . AS_QUALapprox=|1190|0;AS_VarDP=29|31|0;BaseQRankSum=-2.185;DP=63;MQRankSum=-0.934;QUALapprox=1190;RAW_GT_COUNT=0,1,0;RAW_MQandDP=224100,63;ReadPosRankSum=-0.934;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:29,31,0:60:99:1190,0,1077,1277,1170,2448:14,15,19,12 +chrX 3747464 . A . . END=3747466 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,109,1800 +chrX 3747467 . T . . END=3747467 GT:DP:GQ:MIN_DP:PL 0/0:68:0:68:0,0,1543 +chrX 3747468 . A . . END=3747594 GT:DP:GQ:MIN_DP:PL 0/0:73:99:73:0,120,1800 +chrX 3747595 . A G, 863.64 . AS_QUALapprox=|871|0;AS_VarDP=34|33|0;BaseQRankSum=0.991;DP=69;MQRankSum=0.000;QUALapprox=871;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=0.477;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:34,33,0:67:99:871,0,878,973,977,1950:19,15,14,19 +chrX 3747596 . C . . END=3748328 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 3748329 . ATGTGTG A, 698.60 . AS_QUALapprox=|706|0;AS_VarDP=31|20|0;BaseQRankSum=-1.463;DP=63;MQRankSum=-1.205;QUALapprox=706;RAW_GT_COUNT=0,1,0;RAW_MQandDP=225316,63;ReadPosRankSum=-0.691;VarDP=51 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:31,20,0:51:99:0|1:3748329_ATGTGTG_A:706,0,1170,799,1231,2030:3748329:18,13,12,8 +chrX 3748336 . T . . END=3748655 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,107,1662 +chrX 3748656 . A T, 865.64 . AS_QUALapprox=|873|0;AS_VarDP=30|34|0;BaseQRankSum=-1.226;DP=66;MQRankSum=0.000;QUALapprox=873;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=-1.514;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:30,34,0:64:99:873,0,801,963,903,1866:16,14,14,20 +chrX 3748657 . T . . END=3748692 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 3748693 . C G, 938.64 . AS_QUALapprox=|946|0;AS_VarDP=30|35|0;BaseQRankSum=0.244;DP=65;MQRankSum=0.000;QUALapprox=946;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=-0.645;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:30,35,0:65:99:946,0,788,1037,893,1929:15,15,16,19 +chrX 3748694 . A . . END=3748929 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,105,1558 +chrX 3748930 . A G, 1074.64 . AS_QUALapprox=|1082|0;AS_VarDP=28|29|0;BaseQRankSum=-1.011;DP=58;MQRankSum=0.000;QUALapprox=1082;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=1.046;VarDP=57 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,29,0:57:99:0|1:3748930_A_G:1082,0,997,1166,1084,2250:3748930:13,15,11,18 +chrX 3748931 . T . . END=3748953 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 3748954 . A G, 1251.64 . AS_QUALapprox=|1259|0;AS_VarDP=28|32|0;BaseQRankSum=-0.996;DP=60;MQRankSum=0.000;QUALapprox=1259;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=-0.629;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,32,0:60:99:0|1:3748930_A_G:1259,0,1032,1344,1128,2472:3748930:15,13,12,20 +chrX 3748955 . A . . END=3748969 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 3748970 . C CT, 1149.60 . AS_QUALapprox=|1157|0;AS_VarDP=25|30|0;BaseQRankSum=-1.192;DP=55;MQRankSum=0.000;QUALapprox=1157;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-0.064;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,30,0:55:99:0|1:3748930_A_G:1157,0,902,1232,993,2225:3748930:13,12,12,18 +chrX 3748971 . T . . END=3749324 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,114,1589 +chrX 3749325 . A G, 2050.06 . AS_QUALapprox=|2064|0;AS_VarDP=0|68|0;DP=69;QUALapprox=2064;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=68 GT:AD:DP:GQ:PL:SB 1/1:0,68,0:68:99:2064,202,0,2064,202,2064:0,0,30,38 +chrX 3749326 . G . . END=3749401 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 3749402 . C T, 797.64 . AS_QUALapprox=|805|0;AS_VarDP=38|31|0;BaseQRankSum=0.935;DP=71;MQRankSum=0.000;QUALapprox=805;RAW_GT_COUNT=0,1,0;RAW_MQandDP=255600,71;ReadPosRankSum=0.109;VarDP=69 GT:AD:DP:GQ:PL:SB 0/1:38,31,0:69:99:805,0,1013,919,1106,2026:18,20,17,14 +chrX 3749403 . C . . END=3749510 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 3749511 . A G, 798.64 . AS_QUALapprox=|806|0;AS_VarDP=26|31|0;BaseQRankSum=-1.830;DP=58;MQRankSum=0.000;QUALapprox=806;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=1.138;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:26,31,0:57:99:806,0,701,884,794,1679:13,13,15,16 +chrX 3749512 . G . . END=3750304 GT:DP:GQ:MIN_DP:PL 0/0:62:94:62:0,94,1311 +chrX 3750305 . C G, 971.64 . AS_QUALapprox=|979|0;AS_VarDP=32|37|0;BaseQRankSum=-1.575;DP=70;MQRankSum=0.000;QUALapprox=979;RAW_GT_COUNT=0,1,0;RAW_MQandDP=252000,70;ReadPosRankSum=0.692;VarDP=69 GT:AD:DP:GQ:PL:SB 0/1:32,37,0:69:99:979,0,885,1075,996,2071:16,16,22,15 +chrX 3750306 . G . . END=3750616 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 3750617 . T A, 515.64 . AS_QUALapprox=|523|0;AS_VarDP=24|19|0;BaseQRankSum=0.937;DP=46;MQRankSum=-5.786;QUALapprox=523;RAW_GT_COUNT=0,1,0;RAW_MQandDP=95248,46;ReadPosRankSum=1.125;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:24,19,0:43:99:523,0,680,594,737,1332:11,13,4,15 +chrX 3750618 . T . . END=3752042 GT:DP:GQ:MIN_DP:PL 0/0:56:77:56:0,77,1255 +chrX 3752043 . C T, 630.64 . AS_QUALapprox=|638|0;AS_VarDP=24|23|0;BaseQRankSum=1.807;DP=51;MQRankSum=-0.979;QUALapprox=638;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183481,51;ReadPosRankSum=-0.160;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:24,23,0:47:99:638,0,608,710,677,1387:11,13,12,11 +chrX 3752044 . G . . END=3752390 GT:DP:GQ:MIN_DP:PL 0/0:59:83:59:0,83,1324 +chrX 3752391 . A T, 791.64 . AS_QUALapprox=|799|0;AS_VarDP=28|30|0;BaseQRankSum=0.602;DP=65;MQRankSum=0.000;QUALapprox=799;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=-0.467;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:28,30,0:58:99:799,0,689,882,779,1662:16,12,10,20 +chrX 3752392 . T . . END=3752603 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,99,1417 +chrX 3752604 . GA G, 268.60 . AS_QUALapprox=|276|0;AS_VarDP=34|9|0;BaseQRankSum=0.546;DP=44;MQRankSum=-3.413;QUALapprox=276;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151505,44;ReadPosRankSum=-1.586;VarDP=43 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:34,9,0:43:99:0|1:3752604_GA_G:276,0,1401,378,1428,1806:3752604:14,20,3,6 +chrX 3752606 . T TCA, 268.60 . AS_QUALapprox=|276|0;AS_VarDP=34|9|0;BaseQRankSum=0.738;DP=43;MQRankSum=-3.413;QUALapprox=276;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147905,43;ReadPosRankSum=-1.651;VarDP=43 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:34,9,0:43:99:0|1:3752604_GA_G:276,0,1401,378,1428,1806:3752604:14,20,3,6 +chrX 3752607 . G . . END=3752608 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,114,1710 +chrX 3752609 . GA G, 307.60 . AS_QUALapprox=|315|0;AS_VarDP=35|10|0;BaseQRankSum=1.234;DP=45;MQRankSum=-3.283;QUALapprox=315;RAW_GT_COUNT=0,1,0;RAW_MQandDP=155105,45;ReadPosRankSum=-2.120;VarDP=45 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:35,10,0:45:99:0|1:3752604_GA_G:315,0,1440,420,1470,1890:3752604:14,21,4,6 +chrX 3752611 . T . . END=3752616 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,108,1620 +chrX 3752617 . C T, 310.64 . AS_QUALapprox=|318|0;AS_VarDP=34|10|0;BaseQRankSum=-0.449;DP=44;MQRankSum=-3.236;QUALapprox=318;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151505,44;ReadPosRankSum=-1.864;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:34,10,0:44:99:0|1:3752604_GA_G:318,0,1398,420,1428,1848:3752604:14,20,6,4 +chrX 3752618 . A . . END=3752622 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,111,1665 +chrX 3752623 . G T, 487.64 . AS_QUALapprox=|495|0;AS_VarDP=31|14|0;BaseQRankSum=0.236;DP=45;MQRankSum=-2.608;QUALapprox=495;RAW_GT_COUNT=0,1,0;RAW_MQandDP=155105,45;ReadPosRankSum=-3.228;VarDP=45 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:31,14,0:45:99:0|1:3752604_GA_G:495,0,1260,588,1302,1890:3752604:14,17,8,6 +chrX 3752624 . G . . END=3752626 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,117,1755 +chrX 3752627 . A T, 529.64 . AS_QUALapprox=|537|0;AS_VarDP=31|15|0;BaseQRankSum=-0.497;DP=46;MQRankSum=-2.518;QUALapprox=537;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158705,46;ReadPosRankSum=-3.165;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:31,15,0:46:99:0|1:3752604_GA_G:537,0,1257,630,1302,1932:3752604:14,17,9,6 +chrX 3752628 . G . . END=3752633 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,120,1800 +chrX 3752634 . T C, 619.64 . AS_QUALapprox=|627|0;AS_VarDP=29|17|0;BaseQRankSum=0.140;DP=46;MQRankSum=-2.286;QUALapprox=627;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158705,46;ReadPosRankSum=-3.674;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,17,0:46:99:0|1:3752604_GA_G:627,0,1167,714,1218,1932:3752604:14,15,10,7 +chrX 3752635 . C . . END=3752636 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,120,1800 +chrX 3752637 . C T, 580.64 . AS_QUALapprox=|588|0;AS_VarDP=28|16|0;BaseQRankSum=1.794;DP=44;MQRankSum=-1.859;QUALapprox=588;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154321,44;ReadPosRankSum=-3.283;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,16,0:44:99:0|1:3752604_GA_G:588,0,1128,672,1176,1848:3752604:14,14,10,6 +chrX 3752638 . G . . END=3752644 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,114,1344 +chrX 3752645 . C T, 619.64 . AS_QUALapprox=|627|0;AS_VarDP=29|17|0;BaseQRankSum=1.762;DP=46;MQRankSum=-1.835;QUALapprox=627;RAW_GT_COUNT=0,1,0;RAW_MQandDP=161521,46;ReadPosRankSum=-2.100;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,17,0:46:99:0|1:3752604_GA_G:627,0,1167,714,1218,1932:3752604:14,15,11,6 +chrX 3752646 . G . . END=3752652 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,120,1800 +chrX 3752653 . A G, 661.64 . AS_QUALapprox=|669|0;AS_VarDP=29|18|0;BaseQRankSum=0.862;DP=47;MQRankSum=-1.783;QUALapprox=669;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165121,47;ReadPosRankSum=-1.912;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,18,0:47:99:0|1:3752604_GA_G:669,0,1164,756,1218,1974:3752604:15,14,12,6 +chrX 3752654 . G . . END=3752660 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,117,1755 +chrX 3752661 . A G, 748.64 . AS_QUALapprox=|756|0;AS_VarDP=28|20|0;BaseQRankSum=-0.196;DP=48;MQRankSum=-1.661;QUALapprox=756;RAW_GT_COUNT=0,1,0;RAW_MQandDP=168721,48;ReadPosRankSum=-1.194;VarDP=48 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,20,0:48:99:0|1:3752604_GA_G:756,0,1116,840,1176,2016:3752604:14,14,14,6 +chrX 3752662 . C . . END=3752663 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,120,1800 +chrX 3752664 . T C, 706.64 . AS_QUALapprox=|714|0;AS_VarDP=28|19|0;BaseQRankSum=-0.938;DP=47;MQRankSum=0.000;QUALapprox=714;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=-0.440;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,19,0:47:99:0|1:3752604_GA_G:714,0,1119,798,1176,1974:3752604:14,14,15,4 +chrX 3752665 . T G, 700.64 . AS_QUALapprox=|708|0;AS_VarDP=30|19|0;BaseQRankSum=-1.628;DP=49;MQRankSum=0.000;QUALapprox=708;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=-0.592;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:30,19,0:49:99:0|1:3752604_GA_G:708,0,1203,798,1260,2058:3752604:14,16,15,4 +chrX 3752666 . C . . END=3752669 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,120,1800 +chrX 3752670 . A G, 748.64 . AS_QUALapprox=|756|0;AS_VarDP=28|20|0;BaseQRankSum=-0.110;DP=48;MQRankSum=0.000;QUALapprox=756;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=0.043;VarDP=48 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,20,0:48:99:0|1:3752604_GA_G:756,0,1116,840,1176,2016:3752604:12,16,16,4 +chrX 3752671 . G A, 748.64 . AS_QUALapprox=|756|0;AS_VarDP=28|20|0;BaseQRankSum=2.291;DP=48;MQRankSum=0.000;QUALapprox=756;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=-0.033;VarDP=48 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,20,0:48:99:0|1:3752604_GA_G:756,0,1116,840,1176,2016:3752604:12,16,16,4 +chrX 3752672 . T C, 751.64 . AS_QUALapprox=|759|0;AS_VarDP=27|20|0;BaseQRankSum=1.691;DP=47;MQRankSum=0.000;QUALapprox=759;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=0.100;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,20,0:47:99:0|1:3752604_GA_G:759,0,1074,840,1134,1974:3752604:12,15,16,4 +chrX 3752673 . C . . END=3752676 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,120,1800 +chrX 3752677 . T C, 754.64 . AS_QUALapprox=|762|0;AS_VarDP=26|20|0;BaseQRankSum=1.130;DP=49;MQRankSum=0.000;QUALapprox=762;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=0.721;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,20,0:46:99:0|1:3752604_GA_G:762,0,1020,840,1080,1920:3752604:12,14,16,4 +chrX 3752678 . A . . END=3753096 GT:DP:GQ:MIN_DP:PL 0/0:59:53:59:0,53,1414 +chrX 3753097 . A G, 911.64 . AS_QUALapprox=|919|0;AS_VarDP=42|35|0;BaseQRankSum=1.515;DP=83;MQRankSum=0.000;QUALapprox=919;RAW_GT_COUNT=0,1,0;RAW_MQandDP=298800,83;ReadPosRankSum=-0.798;VarDP=77 GT:AD:DP:GQ:PL:SB 0/1:42,35,0:77:99:919,0,1063,1044,1168,2212:21,21,17,18 +chrX 3753098 . G . . END=3754547 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,106,1424 +chrX 3754548 . G A, 846.64 . AS_QUALapprox=|854|0;AS_VarDP=24|31|0;BaseQRankSum=1.540;DP=57;MQRankSum=-2.044;QUALapprox=854;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187602,57;ReadPosRankSum=1.834;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:24,31,0:55:99:854,0,575,926,668,1594:13,11,12,19 +chrX 3754549 . A . . END=3755792 GT:DP:GQ:MIN_DP:PL 0/0:53:35:46:0,35,1171 +chrX 3755793 . CTTT C, 276.60 . AS_QUALapprox=|284|0;AS_VarDP=12|9|0;BaseQRankSum=-0.529;DP=42;MQRankSum=1.634;QUALapprox=284;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147220,42;ReadPosRankSum=-0.368;VarDP=21 GT:AD:DP:GQ:PL:SB 0/1:12,9,0:21:99:284,0,353,320,381,701:7,5,3,6 +chrX 3755797 . T . . END=3755817 GT:DP:GQ:MIN_DP:PL 0/0:49:34:46:0,34,990 +chrX 3755818 . T . . END=3755822 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,818 +chrX 3755823 . A . . END=3755925 GT:DP:GQ:MIN_DP:PL 0/0:40:20:35:0,20,918 +chrX 3755926 . G A, 736.64 . AS_QUALapprox=|744|0;AS_VarDP=27|26|0;BaseQRankSum=2.300;DP=54;MQRankSum=0.000;QUALapprox=744;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=-0.570;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:27,26,0:53:99:744,0,714,825,793,1617:13,14,13,13 +chrX 3755927 . G . . END=3757516 GT:DP:GQ:MIN_DP:PL 0/0:56:77:56:0,77,1201 +chrX 3757517 . C CA, 531.60 . AS_QUALapprox=|539|0;AS_VarDP=14|26|0;BaseQRankSum=0.258;DP=60;MQRankSum=0.000;QUALapprox=539;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=-2.142;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:14,26,0:40:99:539,0,249,581,326,908:7,7,10,16 +chrX 3757518 . A . . END=3757669 GT:DP:GQ:MIN_DP:PL 0/0:58:67:58:0,67,1383 +chrX 3757670 . A G, 821.64 . AS_QUALapprox=|829|0;AS_VarDP=28|31|0;BaseQRankSum=0.298;DP=61;MQRankSum=0.000;QUALapprox=829;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-0.798;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:28,31,0:59:99:829,0,710,912,803,1715:15,13,15,16 +chrX 3757671 . C . . END=3758513 GT:DP:GQ:MIN_DP:PL 0/0:46:25:44:0,25,1063 +chrX 3758514 . T . . END=3758514 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,1011 +chrX 3758515 . C . . END=3758531 GT:DP:GQ:MIN_DP:PL 0/0:47:60:47:0,60,1106 +chrX 3758532 . T . . END=3758532 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,733 +chrX 3758533 . A . . END=3758545 GT:DP:GQ:MIN_DP:PL 0/0:43:29:39:0,29,1008 +chrX 3758546 . G . . END=3758547 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,782 +chrX 3758548 . C . . END=3758569 GT:DP:GQ:MIN_DP:PL 0/0:40:21:39:0,21,1035 +chrX 3758570 . G . . END=3758570 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,774 +chrX 3758571 . C . . END=3758592 GT:DP:GQ:MIN_DP:PL 0/0:39:66:39:0,66,977 +chrX 3758593 . T . . END=3758593 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,858 +chrX 3758594 . C . . END=3758594 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,105,1575 +chrX 3758595 . T . . END=3758595 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,759 +chrX 3758596 . C . . END=3758599 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,102,1206 +chrX 3758600 . T . . END=3758600 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,819 +chrX 3758601 . A . . END=3758684 GT:DP:GQ:MIN_DP:PL 0/0:35:41:35:0,41,782 +chrX 3758685 . CTCCATCCA C, 804.60 . AS_QUALapprox=|812|0;AS_VarDP=13|21|0;BaseQRankSum=-1.616;DP=39;MQRankSum=0.000;QUALapprox=812;RAW_GT_COUNT=0,1,0;RAW_MQandDP=140400,39;ReadPosRankSum=-1.809;VarDP=34 GT:AD:DP:GQ:PL:SB 0/1:13,21,0:34:99:812,0,482,851,546,1397:9,4,8,13 +chrX 3758694 . T . . END=3759394 GT:DP:GQ:MIN_DP:PL 0/0:43:23:34:0,23,793 +chrX 3759395 . T C, 20.64 . AS_QUALapprox=|28|0;AS_VarDP=30|7|0;BaseQRankSum=-2.361;DP=37;MQRankSum=0.000;QUALapprox=28;RAW_GT_COUNT=0,1,0;RAW_MQandDP=133200,37;ReadPosRankSum=0.524;VarDP=37 GT:AD:DP:GQ:PL:SB 0/1:30,7,0:37:28:28,0,773,118,793,910:12,18,7,0 +chrX 3759396 . C . . END=3760274 GT:DP:GQ:MIN_DP:PL 0/0:50:43:50:0,43,1124 +chrX 3760275 . A G, 680.64 . AS_QUALapprox=|688|0;AS_VarDP=31|26|0;BaseQRankSum=1.263;DP=61;MQRankSum=0.000;QUALapprox=688;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=0.737;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:31,26,0:57:99:688,0,827,781,904,1685:17,14,12,14 +chrX 3760276 . A . . END=3760370 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,116,1443 +chrX 3760371 . T A, 691.64 . AS_QUALapprox=|699|0;AS_VarDP=21|26|0;BaseQRankSum=0.465;DP=51;MQRankSum=0.000;QUALapprox=699;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=1.509;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:21,26,0:47:99:699,0,509,761,587,1348:9,12,12,14 +chrX 3760372 . A . . END=3760614 GT:DP:GQ:MIN_DP:PL 0/0:47:94:47:0,94,1286 +chrX 3760615 . A T, 768.64 . AS_QUALapprox=|776|0;AS_VarDP=20|27|0;BaseQRankSum=-0.254;DP=51;MQRankSum=0.000;QUALapprox=776;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-0.183;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:20,27,0:47:99:776,0,529,836,610,1446:8,12,10,17 +chrX 3760616 . G . . END=3760696 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,113,1438 +chrX 3760697 . C T, 787.64 . AS_QUALapprox=|795|0;AS_VarDP=36|22|0;BaseQRankSum=0.814;DP=60;MQRankSum=0.000;QUALapprox=795;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=-0.986;VarDP=58 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:36,22,0:58:99:0|1:3760697_C_T:795,0,1445,903,1512,2415:3760697:22,14,9,13 +chrX 3760698 . A . . END=3760699 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 3760700 . A G, 787.64 . AS_QUALapprox=|795|0;AS_VarDP=36|22|0;BaseQRankSum=0.878;DP=61;MQRankSum=0.000;QUALapprox=795;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-0.325;VarDP=58 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:36,22,0:58:99:0|1:3760697_C_T:795,0,1445,903,1512,2415:3760697:22,14,9,13 +chrX 3760701 . T . . END=3761025 GT:DP:GQ:MIN_DP:PL 0/0:60:97:60:0,97,1608 +chrX 3761026 . T C, 832.64 . AS_QUALapprox=|840|0;AS_VarDP=32|32|0;BaseQRankSum=-1.633;DP=66;MQRankSum=0.000;QUALapprox=840;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=0.255;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:32,32,0:64:99:840,0,889,936,986,1922:14,18,13,19 +chrX 3761027 . G . . END=3761099 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 3761100 . A G, 854.64 . AS_QUALapprox=|862|0;AS_VarDP=31|23|0;BaseQRankSum=-0.383;DP=55;MQRankSum=0.000;QUALapprox=862;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=0.530;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:31,23,0:54:99:0|1:3761100_A_G:862,0,1172,956,1241,2197:3761100:16,15,5,18 +chrX 3761101 . C . . END=3761109 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 3761110 . A G, 906.64 . AS_QUALapprox=|914|0;AS_VarDP=31|24|0;BaseQRankSum=0.059;DP=56;MQRankSum=0.000;QUALapprox=914;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=0.187;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:31,24,0:55:99:0|1:3761100_A_G:914,0,1208,1008,1280,2288:3761100:15,16,5,19 +chrX 3761111 . T . . END=3761127 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 3761128 . C A, 732.64 . AS_QUALapprox=|740|0;AS_VarDP=33|20|0;BaseQRankSum=-0.834;DP=54;MQRankSum=0.000;QUALapprox=740;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=1.311;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:33,20,0:53:99:0|1:3761100_A_G:740,0,1262,840,1323,2162:3761100:16,17,4,16 +chrX 3761129 . A . . END=3761155 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 3761156 . T TGATGGATGGATGGATG, 533.60 . AS_QUALapprox=|541|0;AS_VarDP=25|15|0;BaseQRankSum=-1.642;DP=55;MQRankSum=-1.239;QUALapprox=541;RAW_GT_COUNT=0,1,0;RAW_MQandDP=195184,55;ReadPosRankSum=-0.168;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:25,15,0:40:99:541,0,976,618,1021,1639:14,11,4,11 +chrX 3761157 . G . . END=3761211 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,106,1211 +chrX 3761212 . T C, 577.64 . AS_QUALapprox=|585|0;AS_VarDP=25|16|0;BaseQRankSum=0.533;DP=42;MQRankSum=0.000;QUALapprox=585;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151200,42;ReadPosRankSum=-1.992;VarDP=41 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,16,0:41:99:0|1:3761212_T_C:585,0,969,660,1017,1678:3761212:11,14,5,11 +chrX 3761213 . G A, 577.64 . AS_QUALapprox=|585|0;AS_VarDP=25|16|0;BaseQRankSum=1.951;DP=42;MQRankSum=0.000;QUALapprox=585;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151200,42;ReadPosRankSum=-1.898;VarDP=41 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,16,0:41:99:0|1:3761212_T_C:585,0,969,660,1017,1678:3761212:11,14,5,11 +chrX 3761214 . T . . END=3761283 GT:DP:GQ:MIN_DP:PL 0/0:42:41:42:0,41,1035 +chrX 3761284 . T C, 492.64 . AS_QUALapprox=|500|0;AS_VarDP=19|21|0;BaseQRankSum=-2.304;DP=41;MQRankSum=0.000;QUALapprox=500;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147600,41;ReadPosRankSum=-0.610;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:19,21,0:40:99:500,0,516,557,579,1136:11,8,9,12 +chrX 3761285 . A . . END=3761339 GT:DP:GQ:MIN_DP:PL 0/0:42:70:42:0,70,1110 +chrX 3761340 . T A, 467.64 . AS_QUALapprox=|475|0;AS_VarDP=22|19|0;BaseQRankSum=-0.308;DP=45;MQRankSum=0.000;QUALapprox=475;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=-0.026;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:22,19,0:41:99:475,0,541,539,598,1137:12,10,10,9 +chrX 3761341 . T . . END=3761542 GT:DP:GQ:MIN_DP:PL 0/0:46:78:46:0,78,1164 +chrX 3761543 . G A, 679.64 . AS_QUALapprox=|687|0;AS_VarDP=25|24|0;BaseQRankSum=1.429;DP=50;MQRankSum=0.000;QUALapprox=687;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=0.280;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:25,24,0:49:99:687,0,701,762,773,1536:15,10,14,10 +chrX 3761544 . T . . END=3761768 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,117,1494 +chrX 3761769 . G T, 1245.64 . AS_QUALapprox=|1253|0;AS_VarDP=23|32|0;BaseQRankSum=0.402;DP=56;MQRankSum=-1.184;QUALapprox=1253;RAW_GT_COUNT=0,1,0;RAW_MQandDP=199581,56;ReadPosRankSum=-0.621;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,32,0:55:99:0|1:3761769_G_T:1253,0,869,1322,966,2288:3761769:10,13,17,15 +chrX 3761770 . A . . END=3761777 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 3761778 . A T, 1232.64 . AS_QUALapprox=|1240|0;AS_VarDP=24|32|0;BaseQRankSum=0.144;DP=58;MQRankSum=-1.210;QUALapprox=1240;RAW_GT_COUNT=0,1,0;RAW_MQandDP=203581,58;ReadPosRankSum=-0.654;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,32,0:56:99:0|1:3761769_G_T:1240,0,891,1312,987,2300:3761769:10,14,17,15 +chrX 3761779 . G . . END=3761958 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 3761959 . G A, 1258.64 . AS_QUALapprox=|1266|0;AS_VarDP=24|44|0;BaseQRankSum=1.717;DP=70;MQRankSum=0.000;QUALapprox=1266;RAW_GT_COUNT=0,1,0;RAW_MQandDP=252000,70;ReadPosRankSum=1.457;VarDP=68 GT:AD:DP:GQ:PL:SB 0/1:24,44,0:68:99:1266,0,515,1337,647,1984:12,12,20,24 +chrX 3761960 . G . . END=3762172 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 3762173 . A C, 712.64 . AS_QUALapprox=|720|0;AS_VarDP=26|27|0;BaseQRankSum=0.348;DP=56;MQRankSum=0.000;QUALapprox=720;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=0.107;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:26,27,0:53:99:720,0,703,798,784,1582:15,11,13,14 +chrX 3762174 . A . . END=3762410 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 3762411 . A G, 921.64 . AS_QUALapprox=|929|0;AS_VarDP=23|33|0;BaseQRankSum=0.640;DP=60;MQRankSum=0.000;QUALapprox=929;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=0.325;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:23,33,0:56:99:929,0,581,998,680,1678:10,13,16,17 +chrX 3762412 . T . . END=3762559 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 3762560 . G A, 735.64 . AS_QUALapprox=|743|0;AS_VarDP=26|27|0;BaseQRankSum=0.858;DP=57;MQRankSum=0.000;QUALapprox=743;RAW_GT_COUNT=0,1,0;RAW_MQandDP=204964,57;ReadPosRankSum=0.507;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:26,27,0:53:99:743,0,705,821,786,1607:10,16,11,16 +chrX 3762561 . T . . END=3762642 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 3762643 . C CATA, 1185.60 . AS_QUALapprox=|1193|0;AS_VarDP=22|30|0;BaseQRankSum=1.276;DP=56;MQRankSum=-0.817;QUALapprox=1193;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201364,56;ReadPosRankSum=-0.899;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:22,30,0:52:99:1193,0,833,1260,923,2183:14,8,12,18 +chrX 3762644 . A . . END=3762833 GT:DP:GQ:MIN_DP:PL 0/0:59:72:59:0,72,1192 +chrX 3762834 . T C, 478.64 . AS_QUALapprox=|486|0;AS_VarDP=19|19|0;BaseQRankSum=0.018;DP=42;MQRankSum=0.000;QUALapprox=486;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151200,42;ReadPosRankSum=1.577;VarDP=38 GT:AD:DP:GQ:PL:SB 0/1:19,19,0:38:99:486,0,486,543,543,1086:9,10,7,12 +chrX 3762835 . T . . END=3762974 GT:DP:GQ:MIN_DP:PL 0/0:42:81:42:0,81,1137 +chrX 3762975 . C T, 735.64 . AS_QUALapprox=|743|0;AS_VarDP=20|27|0;BaseQRankSum=0.494;DP=49;MQRankSum=0.000;QUALapprox=743;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=0.506;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:20,27,0:47:99:743,0,500,803,580,1383:11,9,19,8 +chrX 3762976 . G . . END=3763023 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 3763024 . T G, 761.64 . AS_QUALapprox=|769|0;AS_VarDP=27|31|0;BaseQRankSum=-2.518;DP=59;MQRankSum=0.000;QUALapprox=769;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=0.039;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:27,31,0:58:99:769,0,715,849,808,1657:14,13,20,11 +chrX 3763025 . C . . END=3763159 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 3763160 . G A, 1183.64 . AS_QUALapprox=|1191|0;AS_VarDP=20|32|0;BaseQRankSum=-1.423;DP=55;MQRankSum=0.000;QUALapprox=1191;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=0.338;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:20,32,0:52:99:0|1:3763160_G_A:1191,0,733,1251,830,2080:3763160:7,13,16,16 +chrX 3763161 . C . . END=3763180 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 3763181 . T A, 1355.64 . AS_QUALapprox=|1363|0;AS_VarDP=22|38|0;BaseQRankSum=-0.998;DP=62;MQRankSum=0.000;QUALapprox=1363;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=-1.772;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,38,0:60:99:0|1:3763160_G_A:1363,0,779,1430,893,2323:3763160:9,13,18,20 +chrX 3763182 . A . . END=3763328 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 3763329 . T C, 561.64 . AS_QUALapprox=|569|0;AS_VarDP=33|22|0;BaseQRankSum=-0.149;DP=58;MQRankSum=0.000;QUALapprox=569;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=0.352;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:33,22,0:55:99:569,0,942,669,1008,1676:21,12,11,11 +chrX 3763330 . G . . END=3763727 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 3763728 . G T, 641.64 . AS_QUALapprox=|649|0;AS_VarDP=38|24|0;BaseQRankSum=2.564;DP=64;MQRankSum=0.000;QUALapprox=649;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=1.431;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:38,24,0:62:99:649,0,1013,762,1086,1848:19,19,11,13 +chrX 3763729 . T . . END=3764349 GT:DP:GQ:MIN_DP:PL 0/0:43:68:43:0,68,1061 +chrX 3764350 . A T, 496.64 . AS_QUALapprox=|504|0;AS_VarDP=19|19|0;BaseQRankSum=-1.294;DP=39;MQRankSum=0.000;QUALapprox=504;RAW_GT_COUNT=0,1,0;RAW_MQandDP=140400,39;ReadPosRankSum=0.234;VarDP=38 GT:AD:DP:GQ:PL:SB 0/1:19,19,0:38:99:504,0,519,561,576,1137:10,9,8,11 +chrX 3764351 . T . . END=3764467 GT:DP:GQ:MIN_DP:PL 0/0:57:32:48:0,32,1234 +chrX 3764468 . A . . END=3764468 GT:DP:GQ:MIN_DP:PL 0/0:60:7:60:0,7,1618 +chrX 3764469 . T . . END=3764469 GT:DP:GQ:MIN_DP:PL 0/0:61:30:61:0,30,1683 +chrX 3764470 . T . . END=3764470 GT:DP:GQ:MIN_DP:PL 0/0:62:13:62:0,13,1687 +chrX 3764471 . T . . END=3764472 GT:DP:GQ:MIN_DP:PL 0/0:62:43:62:0,43,1697 +chrX 3764473 . A . . END=3764473 GT:DP:GQ:MIN_DP:PL 0/0:60:16:60:0,16,1577 +chrX 3764474 . T . . END=3764483 GT:DP:GQ:MIN_DP:PL 0/0:62:20:58:0,20,1497 +chrX 3764484 . A . . END=3764485 GT:DP:GQ:MIN_DP:PL 0/0:62:0:62:0,0,1457 +chrX 3764486 . C . . END=3764487 GT:DP:GQ:MIN_DP:PL 0/0:62:30:62:0,30,1612 +chrX 3764488 . T . . END=3764488 GT:DP:GQ:MIN_DP:PL 0/0:62:0:62:0,0,1477 +chrX 3764489 . C . . END=3764489 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 3764490 . C . . END=3764493 GT:DP:GQ:MIN_DP:PL 0/0:61:0:61:0,0,1428 +chrX 3764494 . A . . END=3764499 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 3764500 . G T,GCATCCATCCATCCATCCATC,C, 1036.60 . AS_QUALapprox=|0|1044|443|0;AS_VarDP=24|0|23|0|0;BaseQRankSum=-0.749;DP=57;MQRankSum=0.000;QUALapprox=1044;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-0.383;VarDP=47 GT:AD:DP:GQ:PL:SB 0/2:24,0,23,0,0:47:99:1044,1098,1837,0,674,918,601,1405,970,1645,1128,1906,1011,1719,2243:15,9,12,11 +chrX 3764501 . C . . END=3764565 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 3764566 . G C,T, 694.64 . AS_QUALapprox=|702|0|0;AS_VarDP=27|27|1|0;BaseQRankSum=0.292;DP=56;MQRankSum=0.000;QUALapprox=702;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=0.202;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:27,27,1,0:55:99:702,0,682,776,755,1535,783,762,1538,1545:14,13,10,18 +chrX 3764567 . T . . END=3765681 GT:DP:GQ:MIN_DP:PL 0/0:54:76:54:0,76,1062 +chrX 3765682 . A G, 743.64 . AS_QUALapprox=|751|0;AS_VarDP=41|31|0;BaseQRankSum=-2.238;DP=72;MQRankSum=0.000;QUALapprox=751;RAW_GT_COUNT=0,1,0;RAW_MQandDP=259200,72;ReadPosRankSum=-1.189;VarDP=72 GT:AD:DP:GQ:PL:SB 0/1:41,31,0:72:99:751,0,1144,874,1237,2111:17,24,17,14 +chrX 3765683 . T . . END=3765699 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 3765700 . C CT, 827.60 . AS_QUALapprox=|835|0;AS_VarDP=41|28|0;BaseQRankSum=-3.175;DP=71;MQRankSum=0.000;QUALapprox=835;RAW_GT_COUNT=0,1,0;RAW_MQandDP=255600,71;ReadPosRankSum=-0.092;VarDP=69 GT:AD:DP:GQ:PL:SB 0/1:41,28,0:69:99:835,0,1328,958,1412,2370:17,24,16,12 +chrX 3765701 . T . . END=3765908 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 3765909 . G A, 618.64 . AS_QUALapprox=|626|0;AS_VarDP=27|24|0;BaseQRankSum=1.246;DP=54;MQRankSum=0.000;QUALapprox=626;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=1.454;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:27,24,0:51:99:626,0,696,707,767,1475:9,18,16,8 +chrX 3765910 . T . . END=3766108 GT:DP:GQ:MIN_DP:PL 0/0:56:91:56:0,91,1529 +chrX 3766109 . A T, 1048.64 . AS_QUALapprox=|1056|0;AS_VarDP=26|28|0;BaseQRankSum=-0.795;DP=54;MQRankSum=0.000;QUALapprox=1056;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=-0.321;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,28,0:54:99:0|1:3766109_A_T:1056,0,963,1134,1047,2181:3766109:18,8,14,14 +chrX 3766110 . T . . END=3766112 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 3766113 . A G, 1016.64 . AS_QUALapprox=|1024|0;AS_VarDP=26|27|0;BaseQRankSum=-0.530;DP=54;MQRankSum=0.000;QUALapprox=1024;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=0.763;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,27,0:53:99:0|1:3766109_A_T:1024,0,966,1102,1048,2150:3766109:18,8,14,13 +chrX 3766114 . T . . END=3766261 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 3766262 . A C, 499.64 . AS_QUALapprox=|507|0;AS_VarDP=33|22|0;BaseQRankSum=-3.124;DP=58;MQRankSum=0.000;QUALapprox=507;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=1.272;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:33,22,0:55:99:507,0,980,607,1046,1653:19,14,13,9 +chrX 3766263 . C . . END=3766481 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,114,1584 +chrX 3766482 . A G, 627.64 . AS_QUALapprox=|635|0;AS_VarDP=33|26|0;BaseQRankSum=-1.528;DP=60;MQRankSum=-3.376;QUALapprox=635;RAW_GT_COUNT=0,1,0;RAW_MQandDP=207089,60;ReadPosRankSum=-1.871;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:33,26,0:59:99:635,0,941,735,1018,1753:12,21,15,11 +chrX 3766483 . A . . END=3766582 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 3766583 . G C, 788.64 . AS_QUALapprox=|796|0;AS_VarDP=39|30|0;BaseQRankSum=0.031;DP=69;MQRankSum=-4.067;QUALapprox=796;RAW_GT_COUNT=0,1,0;RAW_MQandDP=238004,69;ReadPosRankSum=0.448;VarDP=69 GT:AD:DP:GQ:PL:SB 0/1:39,30,0:69:99:796,0,1067,913,1157,2070:24,15,17,13 +chrX 3766584 . T . . END=3766597 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 3766598 . C G, 768.64 . AS_QUALapprox=|776|0;AS_VarDP=39|30|0;BaseQRankSum=0.652;DP=71;MQRankSum=-4.067;QUALapprox=776;RAW_GT_COUNT=0,1,0;RAW_MQandDP=245204,71;ReadPosRankSum=0.605;VarDP=69 GT:AD:DP:GQ:PL:SB 0/1:39,30,0:69:99:776,0,1018,893,1108,2001:25,14,18,12 +chrX 3766599 . T . . END=3766854 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 3766855 . C T, 706.64 . AS_QUALapprox=|714|0;AS_VarDP=29|29|0;BaseQRankSum=-1.188;DP=59;MQRankSum=-0.966;QUALapprox=714;RAW_GT_COUNT=0,1,0;RAW_MQandDP=210825,59;ReadPosRankSum=-0.700;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:29,29,0:58:99:714,0,770,801,856,1657:17,12,16,13 +chrX 3766856 . T . . END=3767048 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 3767049 . G A, 664.64 . AS_QUALapprox=|672|0;AS_VarDP=40|26|0;BaseQRankSum=1.588;DP=66;MQRankSum=0.000;QUALapprox=672;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=-0.223;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:40,26,0:66:99:672,0,1043,791,1121,1912:22,18,13,13 +chrX 3767050 . T . . END=3767119 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,111,1665 +chrX 3767120 . G GTTTTTTTTTTC,GTTTTTTTTTTCT, 690.60 . AS_QUALapprox=|698|549|0;AS_VarDP=24|10|4|0;BaseQRankSum=1.186;DP=57;MQRankSum=-1.837;QUALapprox=698;RAW_GT_COUNT=0,1,0;RAW_MQandDP=199666,57;ReadPosRankSum=0.394;VarDP=38 GT:AD:DP:GQ:PL:SB 0/1:24,10,4,0:38:99:698,0,767,149,746,951,520,834,996,1311:11,13,10,4 +chrX 3767121 . T . . END=3767142 GT:DP:GQ:MIN_DP:PL 0/0:39:25:33:0,25,888 +chrX 3767143 . G . . END=3767147 GT:DP:GQ:MIN_DP:PL 0/0:52:0:52:0,0,784 +chrX 3767148 . T . . END=3767148 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,111,1665 +chrX 3767149 . C . . END=3767149 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,823 +chrX 3767150 . T . . END=3767150 GT:DP:GQ:MIN_DP:PL 0/0:49:63:49:0,63,1404 +chrX 3767151 . C . . END=3767152 GT:DP:GQ:MIN_DP:PL 0/0:49:12:49:0,12,1204 +chrX 3767153 . C . . END=3767153 GT:DP:GQ:MIN_DP:PL 0/0:49:48:49:0,48,1365 +chrX 3767154 . T . . END=3767156 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1271 +chrX 3767157 . A . . END=3768655 GT:DP:GQ:MIN_DP:PL 0/0:61:57:61:0,57,873 +chrX 3768656 . G A, 471.64 . AS_QUALapprox=|479|0;AS_VarDP=17|17|0;BaseQRankSum=2.114;DP=35;MQRankSum=0.000;QUALapprox=479;RAW_GT_COUNT=0,1,0;RAW_MQandDP=126000,35;ReadPosRankSum=0.362;VarDP=34 GT:AD:DP:GQ:PL:SB 0/1:17,17,0:34:99:479,0,429,530,480,1010:9,8,12,5 +chrX 3768657 . C . . END=3769211 GT:DP:GQ:MIN_DP:PL 0/0:52:47:52:0,47,847 +chrX 3769212 . C G, 630.64 . AS_QUALapprox=|638|0;AS_VarDP=26|24|0;BaseQRankSum=-0.138;DP=52;MQRankSum=0.000;QUALapprox=638;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=1.350;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:26,24,0:50:99:638,0,724,716,795,1512:13,13,12,12 +chrX 3769213 . C . . END=3769391 GT:DP:GQ:MIN_DP:PL 0/0:57:97:57:0,97,1498 +chrX 3769392 . A AT, 187.60 . AS_QUALapprox=|195|0;AS_VarDP=23|11|0;BaseQRankSum=0.110;DP=41;MQRankSum=0.000;QUALapprox=195;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147600,41;ReadPosRankSum=-0.626;VarDP=34 GT:AD:DP:GQ:PL:SB 0/1:23,11,0:34:99:195,0,560,264,593,857:8,15,3,8 +chrX 3769393 . T . . END=3769446 GT:DP:GQ:MIN_DP:PL 0/0:34:81:34:0,81,1037 +chrX 3769447 . A AT, 185.60 . AS_QUALapprox=|193|0;AS_VarDP=19|10|0;BaseQRankSum=-0.470;DP=36;MQRankSum=0.000;QUALapprox=193;RAW_GT_COUNT=0,1,0;RAW_MQandDP=129600,36;ReadPosRankSum=0.023;VarDP=29 GT:AD:DP:GQ:PL:SB 0/1:19,10,0:29:99:193,0,449,250,479,729:13,6,6,4 +chrX 3769448 . T . . END=3769880 GT:DP:GQ:MIN_DP:PL 0/0:45:76:45:0,76,999 +chrX 3769881 . TATC T, 667.60 . AS_QUALapprox=|675|0;AS_VarDP=23|18|0;BaseQRankSum=0.060;DP=46;MQRankSum=0.000;QUALapprox=675;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=0.329;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:23,18,0:41:99:675,0,901,744,955,1699:7,16,9,9 +chrX 3769885 . A . . END=3769986 GT:DP:GQ:MIN_DP:PL 0/0:49:64:49:0,64,899 +chrX 3769987 . C G, 253.64 . AS_QUALapprox=|261|0;AS_VarDP=22|12|0;BaseQRankSum=0.214;DP=35;MQRankSum=0.000;QUALapprox=261;RAW_GT_COUNT=0,1,0;RAW_MQandDP=126000,35;ReadPosRankSum=1.064;VarDP=34 GT:AD:DP:GQ:PL:SB 0/1:22,12,0:34:99:261,0,553,326,588,915:12,10,8,4 +chrX 3769988 . T . . END=3770380 GT:DP:GQ:MIN_DP:PL 0/0:46:57:46:0,57,961 +chrX 3770381 . T C, 953.64 . AS_QUALapprox=|961|0;AS_VarDP=30|26|0;BaseQRankSum=-1.024;DP=57;MQRankSum=0.000;QUALapprox=961;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-0.066;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:30,26,0:56:99:0|1:3770381_T_C:961,0,1168,1051,1246,2297:3770381:15,15,12,14 +chrX 3770382 . A . . END=3770383 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 3770384 . C T, 956.64 . AS_QUALapprox=|964|0;AS_VarDP=29|26|0;BaseQRankSum=0.591;DP=55;MQRankSum=0.000;QUALapprox=964;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=0.113;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,26,0:55:99:0|1:3770381_T_C:964,0,1138,1051,1216,2267:3770381:15,14,12,14 +chrX 3770385 . T . . END=3770565 GT:DP:GQ:MIN_DP:PL 0/0:49:44:49:0,44,869 +chrX 3770566 . T . . END=3770566 GT:DP:GQ:MIN_DP:PL 0/0:33:5:33:0,5,857 +chrX 3770567 . T . . END=3770760 GT:DP:GQ:MIN_DP:PL 0/0:35:26:32:0,26,872 +chrX 3770761 . A G, 1133.64 . AS_QUALapprox=|1141|0;AS_VarDP=23|40|0;BaseQRankSum=-0.129;DP=65;MQRankSum=0.000;QUALapprox=1141;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=0.600;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:23,40,0:63:99:1141,0,565,1210,685,1895:13,10,22,18 +chrX 3770762 . T . . END=3771010 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,102,1662 +chrX 3771011 . T C, 492.64 . AS_QUALapprox=|500|0;AS_VarDP=34|21|0;BaseQRankSum=0.171;DP=58;MQRankSum=0.242;QUALapprox=500;RAW_GT_COUNT=0,1,0;RAW_MQandDP=207755,58;ReadPosRankSum=-0.113;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:34,21,0:55:99:500,0,912,602,975,1577:15,19,10,11 +chrX 3771012 . A . . END=3771393 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,113,1574 +chrX 3771394 . C T, 640.64 . AS_QUALapprox=|648|0;AS_VarDP=29|24|0;BaseQRankSum=1.687;DP=53;MQRankSum=0.000;QUALapprox=648;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=0.885;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:29,24,0:53:99:648,0,772,734,844,1578:16,13,11,13 +chrX 3771395 . T . . END=3771633 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 3771634 . A G, 1042.64 . AS_QUALapprox=|1050|0;AS_VarDP=31|38|0;BaseQRankSum=1.348;DP=73;MQRankSum=0.000;QUALapprox=1050;RAW_GT_COUNT=0,1,0;RAW_MQandDP=262800,73;ReadPosRankSum=0.441;VarDP=69 GT:AD:DP:GQ:PL:SB 0/1:31,38,0:69:99:1050,0,761,1142,875,2017:24,7,17,21 +chrX 3771635 . G . . END=3771644 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 3771645 . G C, 985.64 . AS_QUALapprox=|993|0;AS_VarDP=31|38|0;BaseQRankSum=0.080;DP=71;MQRankSum=0.000;QUALapprox=993;RAW_GT_COUNT=0,1,0;RAW_MQandDP=255600,71;ReadPosRankSum=0.978;VarDP=69 GT:AD:DP:GQ:PL:SB 0/1:31,38,0:69:99:993,0,791,1086,904,1991:22,9,15,23 +chrX 3771646 . A . . END=3771805 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,110,1643 +chrX 3771806 . A C, 613.64 . AS_QUALapprox=|621|0;AS_VarDP=32|24|0;BaseQRankSum=-1.335;DP=60;MQRankSum=0.000;QUALapprox=621;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=0.977;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:32,24,0:56:99:621,0,933,717,1004,1722:14,18,14,10 +chrX 3771807 . C . . END=3774162 GT:DP:GQ:MIN_DP:PL 0/0:59:50:59:0,50,928 +chrX 3774163 . G A, 692.64 . AS_QUALapprox=|700|0;AS_VarDP=34|26|0;BaseQRankSum=1.845;DP=62;MQRankSum=0.000;QUALapprox=700;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=-0.993;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:34,26,0:60:99:700,0,900,801,977,1778:18,16,9,17 +chrX 3774164 . A . . END=3774563 GT:DP:GQ:MIN_DP:PL 0/0:54:63:54:0,63,945 +chrX 3774564 . A . . END=3774564 GT:DP:GQ:MIN_DP:PL 0/0:52:0:52:0,0,0 +chrX 3774565 . CG C, 1167.60 . AS_QUALapprox=|1175|0;AS_VarDP=21|30|0;BaseQRankSum=-0.164;DP=51;MQRankSum=0.000;QUALapprox=1175;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-0.431;VarDP=51 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,30,0:51:99:0|1:3774565_CG_C:1175,0,791,1238,882,2120:3774565:11,10,12,18 +chrX 3774567 . ACG A, 1167.60 . AS_QUALapprox=|1175|0;AS_VarDP=21|30|0;BaseQRankSum=-1.273;DP=51;MQRankSum=0.000;QUALapprox=1175;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-0.603;VarDP=51 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,30,0:51:99:0|1:3774565_CG_C:1175,0,791,1238,882,2120:3774565:11,10,12,18 +chrX 3774570 . T . . END=3774775 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,103,1359 +chrX 3774776 . G A, 667.64 . AS_QUALapprox=|675|0;AS_VarDP=20|26|0;BaseQRankSum=-1.065;DP=48;MQRankSum=0.000;QUALapprox=675;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=-0.299;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:20,26,0:46:99:675,0,515,735,593,1329:12,8,15,11 +chrX 3774777 . T . . END=3775245 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,111,1439 +chrX 3775246 . ATTTTTTTTTTTTTTT A,ATTTTTTTTTTTTT, 311.60 . AS_QUALapprox=|319|56|0;AS_VarDP=7|10|3|0;BaseQRankSum=-1.291;DP=63;MQRankSum=0.196;QUALapprox=319;RAW_GT_COUNT=0,1,0;RAW_MQandDP=207022,63;ReadPosRankSum=-0.296;VarDP=20 GT:AD:DP:GQ:PL:SB 0/1:7,10,3,0:20:34:319,0,985,263,34,352,400,606,434,928:5,2,4,9 +chrX 3775262 . T . . END=3775324 GT:DP:GQ:MIN_DP:PL 0/0:38:63:38:0,63,945 +chrX 3775325 . T C, 354.64 . AS_QUALapprox=|362|0;AS_VarDP=23|15|0;BaseQRankSum=-1.018;DP=39;MQRankSum=-1.702;QUALapprox=362;RAW_GT_COUNT=0,1,0;RAW_MQandDP=128499,39;ReadPosRankSum=0.942;VarDP=38 GT:AD:DP:GQ:PL:SB 0/1:23,15,0:38:99:362,0,665,432,710,1141:9,14,6,9 +chrX 3775326 . G . . END=3775596 GT:DP:GQ:MIN_DP:PL 0/0:52:40:52:0,40,1194 +chrX 3775597 . G C, 685.64 . AS_QUALapprox=|693|0;AS_VarDP=31|27|0;BaseQRankSum=-1.240;DP=60;MQRankSum=0.000;QUALapprox=693;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=-0.608;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:31,27,0:58:99:693,0,861,786,943,1728:16,15,15,12 +chrX 3775598 . C . . END=3775971 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,114,1420 +chrX 3775972 . CTT C, 891.60 . AS_QUALapprox=|899|0;AS_VarDP=31|24|0;BaseQRankSum=-0.460;DP=55;MQRankSum=0.000;QUALapprox=899;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=1.056;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:31,24,0:55:99:0|1:3775972_CTT_C:899,0,1170,993,1243,2235:3775972:17,14,16,8 +chrX 3775975 . T . . END=3775977 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 3775978 . CTTTCTTT C, 885.60 . AS_QUALapprox=|893|0;AS_VarDP=33|24|0;BaseQRankSum=-0.730;DP=58;MQRankSum=0.000;QUALapprox=893;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=1.171;VarDP=57 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:33,24,0:57:99:0|1:3775972_CTT_C:893,0,1221,993,1294,2286:3775972:18,15,16,8 +chrX 3775986 . T . . END=3776261 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,111,1558 +chrX 3776262 . T C, 627.64 . AS_QUALapprox=|635|0;AS_VarDP=25|26|0;BaseQRankSum=-0.555;DP=51;MQRankSum=0.000;QUALapprox=635;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-0.113;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:25,26,0:51:99:635,0,636,710,714,1424:7,18,11,15 +chrX 3776263 . G . . END=3776315 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 3776316 . T C, 864.64 . AS_QUALapprox=|872|0;AS_VarDP=22|33|0;BaseQRankSum=-2.043;DP=59;MQRankSum=0.000;QUALapprox=872;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-0.060;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:22,33,0:55:99:872,0,579,938,679,1616:7,15,12,21 +chrX 3776317 . C . . END=3776619 GT:DP:GQ:MIN_DP:PL 0/0:60:51:60:0,51,1523 +chrX 3776620 . T C, 697.64 . AS_QUALapprox=|705|0;AS_VarDP=19|27|0;BaseQRankSum=-1.098;DP=47;MQRankSum=-0.795;QUALapprox=705;RAW_GT_COUNT=0,1,0;RAW_MQandDP=168100,47;ReadPosRankSum=-0.837;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:19,27,0:46:99:705,0,493,762,573,1336:9,10,12,15 +chrX 3776621 . G . . END=3776825 GT:DP:GQ:MIN_DP:PL 0/0:28:35:26:0,35,749 +chrX 3776826 . G . . END=3776827 GT:DP:GQ:MIN_DP:PL 0/0:29:0:29:0,0,635 +chrX 3776828 . C . . END=3776828 GT:DP:GQ:MIN_DP:PL 0/0:27:75:27:0,75,1125 +chrX 3776829 . T . . END=3776829 GT:DP:GQ:MIN_DP:PL 0/0:29:0:29:0,0,639 +chrX 3776830 . C A, 77.64 . AS_QUALapprox=|85|0;AS_VarDP=21|18|0;BaseQRankSum=-0.523;DP=41;MQRankSum=-1.892;QUALapprox=85;RAW_GT_COUNT=0,1,0;RAW_MQandDP=141600,41;ReadPosRankSum=1.987;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:21,18,0:39:85:85,0,496,147,536,683:17,4,0,18 +chrX 3776831 . A . . END=3777441 GT:DP:GQ:MIN_DP:PL 0/0:51:54:51:0,54,1242 +chrX 3777442 . T C, 388.64 . AS_QUALapprox=|396|0;AS_VarDP=24|16|0;BaseQRankSum=-1.804;DP=40;MQRankSum=0.000;QUALapprox=396;RAW_GT_COUNT=0,1,0;RAW_MQandDP=144000,40;ReadPosRankSum=-1.382;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:24,16,0:40:99:396,0,689,468,737,1205:13,11,9,7 +chrX 3777443 . G . . END=3777625 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,102,1351 +chrX 3777626 . G A, 1035.64 . AS_QUALapprox=|1043|0;AS_VarDP=38|39|0;BaseQRankSum=0.330;DP=79;MQRankSum=0.000;QUALapprox=1043;RAW_GT_COUNT=0,1,0;RAW_MQandDP=284400,79;ReadPosRankSum=-0.158;VarDP=77 GT:AD:DP:GQ:PL:SB 0/1:38,39,0:77:99:1043,0,979,1157,1097,2254:18,20,21,18 +chrX 3777627 . C . . END=3777788 GT:DP:GQ:MIN_DP:PL 0/0:75:56:75:0,56,1702 +chrX 3777789 . G GT, 954.60 . AS_QUALapprox=|962|0;AS_VarDP=26|25|0;BaseQRankSum=0.045;DP=60;MQRankSum=0.000;QUALapprox=962;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=2.017;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:26,25,0:51:99:962,0,1017,1041,1092,2133:13,13,17,8 +chrX 3777790 . T . . END=3777793 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 3777794 . G GT,GTTTTGTTTTTGT, 1139.60 . AS_QUALapprox=|1147|105|0;AS_VarDP=22|25|0|0;BaseQRankSum=0.603;DP=61;MQRankSum=0.000;QUALapprox=1147;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=0.864;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:22,25,0,0:47:99:1147,0,1002,1042,920,2083,1151,1023,2049,2200:12,10,17,8 +chrX 3777795 . T . . END=3778687 GT:DP:GQ:MIN_DP:PL 0/0:57:50:57:0,50,1201 +chrX 3778688 . GTTGATTGGATTTTAATCCAATTTTAA G, 1069.60 . AS_QUALapprox=|1077|0;AS_VarDP=19|27|0;BaseQRankSum=0.644;DP=46;MQRankSum=0.000;QUALapprox=1077;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=1.142;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:19,27,0:46:99:0|1:3778688_GTTGATTGGATTTTAATCCAATTTTAA_G:1077,0,717,1134,798,1932:3778688:10,9,14,13 +chrX 3778715 . T . . END=3778716 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,99,1485 +chrX 3778717 . C CGT, 1132.60 . AS_QUALapprox=|1140|0;AS_VarDP=12|28|0;BaseQRankSum=0.888;DP=42;MQRankSum=0.000;QUALapprox=1140;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151200,42;ReadPosRankSum=0.842;VarDP=40 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:12,28,0:40:99:0|1:3778688_GTTGATTGGATTTTAATCCAATTTTAA_G:1140,0,419,1176,504,1680:3778688:4,8,15,13 +chrX 3778718 . A . . END=3779023 GT:DP:GQ:MIN_DP:PL 0/0:57:77:57:0,77,1187 +chrX 3779024 . C T, 775.64 . AS_QUALapprox=|783|0;AS_VarDP=29|29|0;BaseQRankSum=-0.347;DP=59;MQRankSum=0.000;QUALapprox=783;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-2.070;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:29,29,0:58:99:783,0,794,870,881,1751:19,10,12,17 +chrX 3779025 . G . . END=3779093 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 3779094 . C T, 713.64 . AS_QUALapprox=|721|0;AS_VarDP=29|27|0;BaseQRankSum=-0.399;DP=59;MQRankSum=0.000;QUALapprox=721;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=0.090;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:29,27,0:56:99:721,0,785,807,866,1673:18,11,16,11 +chrX 3779095 . C . . END=3779159 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 3779160 . T C, 630.64 . AS_QUALapprox=|638|0;AS_VarDP=38|26|0;BaseQRankSum=0.148;DP=67;MQRankSum=0.000;QUALapprox=638;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=1.115;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:38,26,0:64:99:638,0,991,751,1069,1819:19,19,16,10 +chrX 3779161 . T . . END=3779381 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 3779382 . G A, 1129.64 . AS_QUALapprox=|1137|0;AS_VarDP=23|41|0;BaseQRankSum=0.250;DP=66;MQRankSum=0.000;QUALapprox=1137;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=1.253;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:23,41,0:64:99:1137,0,543,1206,665,1871:15,8,21,20 +chrX 3779383 . T . . END=3780743 GT:DP:GQ:MIN_DP:PL 0/0:58:73:58:0,73,1379 +chrX 3780744 . G A, 634.64 . AS_QUALapprox=|642|0;AS_VarDP=34|25|0;BaseQRankSum=-1.150;DP=61;MQRankSum=0.000;QUALapprox=642;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=0.246;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:34,25,0:59:99:642,0,960,744,1035,1779:17,17,12,13 +chrX 3780745 . G . . END=3785936 GT:DP:GQ:MIN_DP:PL 0/0:56:76:56:0,76,1076 +chrX 3785937 . A G, 428.64 . AS_QUALapprox=|436|0;AS_VarDP=18|17|0;BaseQRankSum=-2.422;DP=38;MQRankSum=0.000;QUALapprox=436;RAW_GT_COUNT=0,1,0;RAW_MQandDP=136800,38;ReadPosRankSum=1.321;VarDP=35 GT:AD:DP:GQ:PL:SB 0/1:18,17,0:35:99:436,0,521,490,572,1061:9,9,11,6 +chrX 3785938 . A . . END=3786402 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,102,1296 +chrX 3786403 . G A, 1011.64 . AS_QUALapprox=|1019|0;AS_VarDP=31|27|0;BaseQRankSum=1.132;DP=61;MQRankSum=-1.504;QUALapprox=1019;RAW_GT_COUNT=0,1,0;RAW_MQandDP=217798,61;ReadPosRankSum=0.360;VarDP=58 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:31,27,0:58:99:0|1:3786403_G_A:1019,0,1143,1112,1225,2336:3786403:13,18,11,16 +chrX 3786404 . A . . END=3786411 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 3786412 . C T, 950.64 . AS_QUALapprox=|958|0;AS_VarDP=30|25|0;BaseQRankSum=0.560;DP=55;MQRankSum=-1.537;QUALapprox=958;RAW_GT_COUNT=0,1,0;RAW_MQandDP=196882,55;ReadPosRankSum=0.566;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:30,25,0:55:99:0|1:3786403_G_A:958,0,1127,1048,1202,2250:3786403:14,16,10,15 +chrX 3786413 . A . . END=3786428 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 3786429 . A AT, 744.60 . AS_QUALapprox=|752|0;AS_VarDP=27|20|0;BaseQRankSum=0.330;DP=52;MQRankSum=0.000;QUALapprox=752;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=1.066;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,20,0:47:99:0|1:3786429_A_AT:752,0,1074,833,1134,1967:3786429:16,11,9,11 +chrX 3786430 . T . . END=3786432 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,120,1800 +chrX 3786433 . A C, 744.64 . AS_QUALapprox=|752|0;AS_VarDP=27|20|0;BaseQRankSum=-0.070;DP=50;MQRankSum=0.000;QUALapprox=752;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=0.969;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,20,0:47:99:0|1:3786429_A_AT:752,0,1074,833,1134,1967:3786429:16,11,9,11 +chrX 3786434 . T . . END=3787156 GT:DP:GQ:MIN_DP:PL 0/0:57:62:57:0,62,1260 +chrX 3787157 . G A, 974.64 . AS_QUALapprox=|982|0;AS_VarDP=26|34|0;BaseQRankSum=1.621;DP=64;MQRankSum=0.000;QUALapprox=982;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=-1.261;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:26,34,0:60:99:982,0,659,1060,761,1820:14,12,16,18 +chrX 3787158 . A . . END=3787426 GT:DP:GQ:MIN_DP:PL 0/0:58:28:57:0,28,1584 +chrX 3787427 . T TATCA, 1230.60 . AS_QUALapprox=|1238|0;AS_VarDP=21|31|0;BaseQRankSum=-1.511;DP=54;MQRankSum=0.000;QUALapprox=1238;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=1.912;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:21,31,0:52:99:1238,0,789,1302,882,2184:11,10,17,14 +chrX 3787428 . A . . END=3788563 GT:DP:GQ:MIN_DP:PL 0/0:56:49:56:0,49,845 +chrX 3788564 . CAAAAAAAAA C,CAAAAA, 852.02 . AS_QUALapprox=|561|318|0;AS_VarDP=2|15|11|0;BaseQRankSum=-0.502;DP=41;MQRankSum=0.000;QUALapprox=869;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147600,41;ReadPosRankSum=0.193;VarDP=28 GT:AD:DP:GQ:PL:SB 1/2:2,15,11,0:28:99:869,308,623,551,0,557,908,526,608,1095:1,1,15,11 +chrX 3788574 . A . . END=3789485 GT:DP:GQ:MIN_DP:PL 0/0:62:89:62:0,89,1211 +chrX 3789486 . T TC, 992.60 . AS_QUALapprox=|1000|0;AS_VarDP=26|29|0;BaseQRankSum=0.131;DP=57;MQRankSum=0.000;QUALapprox=1000;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=0.051;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:26,29,0:55:99:1000,0,862,1078,949,2027:9,17,12,17 +chrX 3789487 . A . . END=3789816 GT:DP:GQ:MIN_DP:PL 0/0:58:92:58:0,92,1519 +chrX 3789817 . G A, 783.64 . AS_QUALapprox=|791|0;AS_VarDP=32|28|0;BaseQRankSum=2.180;DP=61;MQRankSum=0.000;QUALapprox=791;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-0.052;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:32,28,0:60:99:791,0,850,887,934,1820:16,16,15,13 +chrX 3789818 . G . . END=3789945 GT:DP:GQ:MIN_DP:PL 0/0:59:91:59:0,91,1738 +chrX 3789946 . A C, 709.64 . AS_QUALapprox=|717|0;AS_VarDP=26|28|0;BaseQRankSum=-0.757;DP=58;MQRankSum=0.000;QUALapprox=717;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=0.831;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:26,28,0:54:99:717,0,713,795,796,1590:11,15,17,11 +chrX 3789947 . T . . END=3790708 GT:DP:GQ:MIN_DP:PL 0/0:60:55:60:0,55,1424 +chrX 3790709 . CTT C,CTTT, 642.02 . AS_QUALapprox=|208|373|0;AS_VarDP=0|10|20|0;DP=50;QUALapprox=659;RAW_GT_COUNT=0,0,1;RAW_MQandDP=170725,50;VarDP=30 GT:AD:DP:GQ:PL:SB 1/2:0,10,20,0:30:99:659,451,762,286,0,296,730,646,331,908:0,0,19,11 +chrX 3790712 . T . . END=3790731 GT:DP:GQ:MIN_DP:PL 0/0:46:66:46:0,66,990 +chrX 3790732 . G T, 3.74 . AS_QUALapprox=|11|0;AS_VarDP=31|6|0;BaseQRankSum=-0.573;DP=45;MQRankSum=-1.988;QUALapprox=11;RAW_GT_COUNT=0,1,0;RAW_MQandDP=149750,45;ReadPosRankSum=0.783;VarDP=37 GT:AD:DP:GQ:PL:SB 0/1:31,6,0:37:11:11,0,967,103,985,1087:16,15,6,0 +chrX 3790733 . A . . END=3790733 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,902 +chrX 3790734 . G . . END=3790960 GT:DP:GQ:MIN_DP:PL 0/0:52:56:52:0,56,1010 +chrX 3790961 . A G, 2034.06 . AS_QUALapprox=|2048|0;AS_VarDP=0|66|0;DP=67;QUALapprox=2048;RAW_GT_COUNT=0,0,1;RAW_MQandDP=240849,67;VarDP=66 GT:AD:DP:GQ:PL:SB 1/1:0,66,0:66:99:2048,196,0,2048,196,2048:0,0,26,40 +chrX 3790962 . C . . END=3791027 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 3791028 . C T, 900.64 . AS_QUALapprox=|908|0;AS_VarDP=27|34|0;BaseQRankSum=-0.626;DP=65;MQRankSum=0.000;QUALapprox=908;RAW_GT_COUNT=0,1,0;RAW_MQandDP=233649,65;ReadPosRankSum=-0.843;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:27,34,0:61:99:908,0,690,988,793,1781:15,12,15,19 +chrX 3791029 . T . . END=3791867 GT:DP:GQ:MIN_DP:PL 0/0:59:81:59:0,81,1101 +chrX 3791868 . A . . END=3791868 GT:DP:GQ:MIN_DP:PL 0/0:36:13:36:0,13,860 +chrX 3791869 . G . . END=3791875 GT:DP:GQ:MIN_DP:PL 0/0:38:28:34:0,28,822 +chrX 3791876 . G . . END=3791876 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,564 +chrX 3791877 . C . . END=3791880 GT:DP:GQ:MIN_DP:PL 0/0:45:65:45:0,65,1125 +chrX 3791881 . C CTT,CTTTTT, 402.63 . AS_QUALapprox=|410|190|0;AS_VarDP=4|12|4|0;BaseQRankSum=0.924;DP=46;MQRankSum=-0.635;QUALapprox=415;RAW_GT_COUNT=0,0,1;RAW_MQandDP=159025,46;ReadPosRankSum=-0.996;VarDP=20 GT:AD:DP:GQ:PL:SB 1/2:4,12,4,0:20:5:415,5,48,225,0,426,393,112,400,532:1,3,5,11 +chrX 3791882 . T . . END=3791904 GT:DP:GQ:MIN_DP:PL 0/0:45:63:45:0,63,945 +chrX 3791905 . G . . END=3791908 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,675 +chrX 3791909 . T . . END=3792525 GT:DP:GQ:MIN_DP:PL 0/0:50:67:50:0,67,1021 +chrX 3792526 . G C, 684.64 . AS_QUALapprox=|692|0;AS_VarDP=24|28|0;BaseQRankSum=-1.378;DP=54;MQRankSum=0.000;QUALapprox=692;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=-1.377;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:24,28,0:52:99:692,0,635,764,717,1482:10,14,14,14 +chrX 3792527 . G . . END=3792627 GT:DP:GQ:MIN_DP:PL 0/0:44:46:44:0,46,817 +chrX 3792628 . G C, 514.64 . AS_QUALapprox=|522|0;AS_VarDP=12|19|0;BaseQRankSum=-0.095;DP=32;MQRankSum=0.000;QUALapprox=522;RAW_GT_COUNT=0,1,0;RAW_MQandDP=115200,32;ReadPosRankSum=-0.406;VarDP=31 GT:AD:DP:GQ:PL:SB 0/1:12,19,0:31:99:522,0,305,558,361,919:2,10,8,11 +chrX 3792629 . A . . END=3792701 GT:DP:GQ:MIN_DP:PL 0/0:30:26:28:0,26,733 +chrX 3792702 . T A, 974.06 . AS_QUALapprox=|988|0;AS_VarDP=0|29|0;DP=32;QUALapprox=988;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;VarDP=29 GT:AD:DP:GQ:PL:SB 1/1:0,29,0:29:87:988,87,0,988,87,988:0,0,15,14 +chrX 3792703 . G . . END=3792822 GT:DP:GQ:MIN_DP:PL 0/0:38:47:38:0,47,954 +chrX 3792823 . T C, 229.64 . AS_QUALapprox=|237|0;AS_VarDP=26|11|0;BaseQRankSum=-1.220;DP=38;MQRankSum=0.000;QUALapprox=237;RAW_GT_COUNT=0,1,0;RAW_MQandDP=136800,38;ReadPosRankSum=0.416;VarDP=37 GT:AD:DP:GQ:PL:SB 0/1:26,11,0:37:99:237,0,763,315,796,1110:10,16,8,3 +chrX 3792824 . T . . END=3792845 GT:DP:GQ:MIN_DP:PL 0/0:36:71:36:0,71,1013 +chrX 3792846 . C CA, 570.60 . AS_QUALapprox=|578|0;AS_VarDP=12|24|0;BaseQRankSum=0.831;DP=39;MQRankSum=0.000;QUALapprox=578;RAW_GT_COUNT=0,1,0;RAW_MQandDP=140400,39;ReadPosRankSum=0.991;VarDP=36 GT:AD:DP:GQ:PL:SB 0/1:12,24,0:36:99:578,0,236,614,308,922:9,3,9,15 +chrX 3792847 . A . . END=3793379 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,105,1236 +chrX 3793380 . C T, 949.64 . AS_QUALapprox=|957|0;AS_VarDP=35|36|0;BaseQRankSum=1.902;DP=72;MQRankSum=0.000;QUALapprox=957;RAW_GT_COUNT=0,1,0;RAW_MQandDP=259200,72;ReadPosRankSum=-0.403;VarDP=71 GT:AD:DP:GQ:PL:SB 0/1:35,36,0:71:99:957,0,837,1062,945,2007:18,17,18,18 +chrX 3793381 . C . . END=3794045 GT:DP:GQ:MIN_DP:PL 0/0:61:49:61:0,49,833 +chrX 3794046 . A ACCCCCCCCC, 22.60 . AS_QUALapprox=|30|0;AS_VarDP=22|4|0;BaseQRankSum=-0.157;DP=30;MQRankSum=0.000;QUALapprox=30;RAW_GT_COUNT=0,1,0;RAW_MQandDP=108000,30;ReadPosRankSum=-0.499;VarDP=26 GT:AD:DP:GQ:PL:SB 0/1:22,4,0:26:30:30,0,775,96,786,882:4,18,4,0 +chrX 3794047 . C . . END=3794056 GT:DP:GQ:MIN_DP:PL 0/0:26:48:26:0,48,720 +chrX 3794057 . A C, 59.64 . AS_QUALapprox=|67|0;AS_VarDP=19|6|0;BaseQRankSum=-1.451;DP=27;MQRankSum=0.000;QUALapprox=67;RAW_GT_COUNT=0,1,0;RAW_MQandDP=97200,27;ReadPosRankSum=0.095;VarDP=25 GT:AD:DP:GQ:PL:SB 0/1:19,6,0:25:67:67,0,530,124,547,671:1,18,5,1 +chrX 3794058 . C . . END=3794060 GT:DP:GQ:MIN_DP:PL 0/0:30:63:30:0,63,945 +chrX 3794061 . T . . END=3794061 GT:DP:GQ:MIN_DP:PL 0/0:25:0:25:0,0,612 +chrX 3794062 . T . . END=3794067 GT:DP:GQ:MIN_DP:PL 0/0:30:63:30:0,63,945 +chrX 3794068 . T . . END=3794068 GT:DP:GQ:MIN_DP:PL 0/0:29:18:29:0,18,829 +chrX 3794069 . G . . END=3794075 GT:DP:GQ:MIN_DP:PL 0/0:29:67:29:0,67,860 +chrX 3794076 . A . . END=3794076 GT:DP:GQ:MIN_DP:PL 0/0:33:15:33:0,15,929 +chrX 3794077 . G . . END=3795067 GT:DP:GQ:MIN_DP:PL 0/0:62:46:62:0,46,1003 +chrX 3795068 . C G, 1573.06 . AS_QUALapprox=|1587|0;AS_VarDP=0|48|0;DP=48;QUALapprox=1587;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172116,48;VarDP=48 GT:AD:DP:GQ:PL:SB 1/1:0,48,0:48:99:1587,144,0,1587,144,1587:0,0,20,28 +chrX 3795069 . G . . END=3795123 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,112,1361 +chrX 3795124 . T C, 500.64 . AS_QUALapprox=|508|0;AS_VarDP=24|20|0;BaseQRankSum=-1.128;DP=48;MQRankSum=0.000;QUALapprox=508;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=-1.745;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:24,20,0:44:99:508,0,682,580,742,1322:13,11,7,13 +chrX 3795125 . C . . END=3795467 GT:DP:GQ:MIN_DP:PL 0/0:55:95:55:0,95,1480 +chrX 3795468 . T C, 632.64 . AS_QUALapprox=|640|0;AS_VarDP=20|23|0;BaseQRankSum=0.203;DP=46;MQRankSum=0.000;QUALapprox=640;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=0.183;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:20,23,0:43:99:640,0,535,700,604,1304:12,8,12,11 +chrX 3795469 . G . . END=3795823 GT:DP:GQ:MIN_DP:PL 0/0:63:97:63:0,97,1538 +chrX 3795824 . A G, 861.64 . AS_QUALapprox=|869|0;AS_VarDP=37|34|0;BaseQRankSum=-0.016;DP=73;MQRankSum=0.000;QUALapprox=869;RAW_GT_COUNT=0,1,0;RAW_MQandDP=261049,73;ReadPosRankSum=-2.107;VarDP=71 GT:AD:DP:GQ:PL:SB 0/1:37,34,0:71:99:869,0,993,980,1094,2074:18,19,16,18 +chrX 3795825 . T . . END=3795928 GT:DP:GQ:MIN_DP:PL 0/0:63:36:63:0,36,1617 +chrX 3795929 . C . . END=3795929 GT:DP:GQ:MIN_DP:PL 0/0:64:18:64:0,18,1757 +chrX 3795930 . A . . END=3795930 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 3795931 . A . . END=3795931 GT:DP:GQ:MIN_DP:PL 0/0:65:0:65:0,0,1690 +chrX 3795932 . T TGAGA, 1638.03 . AS_QUALapprox=|1652|0;AS_VarDP=2|51|0;BaseQRankSum=2.645;DP=61;MQRankSum=0.000;QUALapprox=1652;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;ReadPosRankSum=1.541;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:2,51,0:53:99:1652,110,0,1659,153,1702:1,1,28,23 +chrX 3795933 . G . . END=3796600 GT:DP:GQ:MIN_DP:PL 0/0:67:23:61:0,23,1373 +chrX 3796601 . G A, 789.64 . AS_QUALapprox=|797|0;AS_VarDP=25|29|0;BaseQRankSum=2.233;DP=60;MQRankSum=-2.601;QUALapprox=797;RAW_GT_COUNT=0,1,0;RAW_MQandDP=203700,60;ReadPosRankSum=-2.057;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:25,29,0:54:99:797,0,567,871,654,1525:12,13,12,17 +chrX 3796602 . G . . END=3796646 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 3796647 . C T, 724.64 . AS_QUALapprox=|732|0;AS_VarDP=22|27|0;BaseQRankSum=0.498;DP=53;MQRankSum=-3.871;QUALapprox=732;RAW_GT_COUNT=0,1,0;RAW_MQandDP=177393,53;ReadPosRankSum=0.755;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:22,27,0:49:99:732,0,542,797,623,1420:11,11,12,15 +chrX 3796648 . G . . END=3796911 GT:DP:GQ:MIN_DP:PL 0/0:47:63:47:0,63,1132 +chrX 3796912 . A G, 1890.06 . AS_QUALapprox=|1904|0;AS_VarDP=0|56|0;DP=58;QUALapprox=1904;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1904,168,0,1904,168,1904:0,0,31,25 +chrX 3796913 . A . . END=3799659 GT:DP:GQ:MIN_DP:PL 0/0:56:80:56:0,80,1016 +chrX 3799660 . C G, 702.64 . AS_QUALapprox=|710|0;AS_VarDP=20|29|0;BaseQRankSum=-2.388;DP=51;MQRankSum=0.000;QUALapprox=710;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=0.987;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:20,29,0:49:99:710,0,529,771,615,1386:13,7,14,15 +chrX 3799661 . A . . END=3799778 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,105,1335 +chrX 3799779 . A G, 1508.06 . AS_QUALapprox=|1522|0;AS_VarDP=0|48|0;DP=48;QUALapprox=1522;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=48 GT:AD:DP:GQ:PL:SB 1/1:0,48,0:48:99:1522,143,0,1522,143,1522:0,0,19,29 +chrX 3799780 . A . . END=3799816 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,119,1457 +chrX 3799817 . A G, 749.64 . AS_QUALapprox=|757|0;AS_VarDP=18|27|0;BaseQRankSum=-0.021;DP=46;MQRankSum=0.000;QUALapprox=757;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=-0.417;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:18,27,0:45:99:757,0,471,811,552,1363:8,10,11,16 +chrX 3799818 . A . . END=3799901 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,100,1271 +chrX 3799902 . A G, 530.64 . AS_QUALapprox=|538|0;AS_VarDP=31|23|0;BaseQRankSum=-0.538;DP=57;MQRankSum=0.000;QUALapprox=538;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-0.403;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:31,23,0:54:99:538,0,836,631,904,1535:22,9,14,9 +chrX 3799903 . C . . END=3799991 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 3799992 . T G, 761.64 . AS_QUALapprox=|769|0;AS_VarDP=35|31|0;BaseQRankSum=0.554;DP=67;MQRankSum=0.000;QUALapprox=769;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=-1.202;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:35,31,0:66:99:769,0,898,875,991,1865:19,16,16,15 +chrX 3799993 . C . . END=3800018 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 3800019 . G C, 720.64 . AS_QUALapprox=|728|0;AS_VarDP=31|28|0;BaseQRankSum=2.623;DP=62;MQRankSum=0.000;QUALapprox=728;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=-0.296;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:31,28,0:59:99:728,0,695,820,778,1598:14,17,18,10 +chrX 3800020 . T . . END=3800264 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 3800265 . C G, 809.64 . AS_QUALapprox=|817|0;AS_VarDP=34|31|0;BaseQRankSum=0.458;DP=71;MQRankSum=0.000;QUALapprox=817;RAW_GT_COUNT=0,1,0;RAW_MQandDP=255600,71;ReadPosRankSum=0.769;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:34,31,0:65:99:817,0,902,919,995,1914:19,15,14,17 +chrX 3800266 . A . . END=3800501 GT:DP:GQ:MIN_DP:PL 0/0:56:69:56:0,69,1374 +chrX 3800502 . G . . END=3800502 GT:DP:GQ:MIN_DP:PL 0/0:49:8:49:0,8,1283 +chrX 3800503 . A ATTTT, 395.60 . AS_QUALapprox=|403|0;AS_VarDP=7|14|0;BaseQRankSum=-0.751;DP=43;MQRankSum=0.000;QUALapprox=403;RAW_GT_COUNT=0,1,0;RAW_MQandDP=149700,43;ReadPosRankSum=0.635;VarDP=21 GT:AD:DP:GQ:PL:SB 0/1:7,14,0:21:99:403,0,174,424,216,641:3,4,11,3 +chrX 3800504 . T . . END=3800506 GT:DP:GQ:MIN_DP:PL 0/0:54:42:54:0,42,630 +chrX 3800507 . T . . END=3800507 GT:DP:GQ:MIN_DP:PL 0/0:54:0:54:0,0,804 +chrX 3800508 . T . . END=3800530 GT:DP:GQ:MIN_DP:PL 0/0:53:51:53:0,51,765 +chrX 3800531 . G . . END=3800535 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,428 +chrX 3800536 . A . . END=3801874 GT:DP:GQ:MIN_DP:PL 0/0:46:28:34:0,28,953 +chrX 3801875 . C T, 812.64 . AS_QUALapprox=|820|0;AS_VarDP=22|29|0;BaseQRankSum=1.207;DP=54;MQRankSum=0.000;QUALapprox=820;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=1.408;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:22,29,0:51:99:820,0,558,886,645,1531:7,15,9,20 +chrX 3801876 . T . . END=3802050 GT:DP:GQ:MIN_DP:PL 0/0:54:70:54:0,70,1559 +chrX 3802051 . CAG C, 996.60 . AS_QUALapprox=|1004|0;AS_VarDP=25|26|0;BaseQRankSum=0.881;DP=53;MQRankSum=0.000;QUALapprox=1004;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=1.093;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:25,26,0:51:99:1004,0,957,1079,1036,2115:14,11,17,9 +chrX 3802054 . A . . END=3802197 GT:DP:GQ:MIN_DP:PL 0/0:49:51:49:0,51,1052 +chrX 3802198 . A . . END=3802198 GT:DP:GQ:MIN_DP:PL 0/0:34:18:34:0,18,882 +chrX 3802199 . G . . END=3802208 GT:DP:GQ:MIN_DP:PL 0/0:29:24:28:0,24,729 +chrX 3802209 . T . . END=3802209 GT:DP:GQ:MIN_DP:PL 0/0:25:0:25:0,0,481 +chrX 3802210 . A . . END=3802224 GT:DP:GQ:MIN_DP:PL 0/0:28:22:25:0,22,692 +chrX 3802225 . G C, 254.64 . AS_QUALapprox=|262|0;AS_VarDP=9|11|0;BaseQRankSum=-0.821;DP=20;MQRankSum=-0.804;QUALapprox=262;RAW_GT_COUNT=0,1,0;RAW_MQandDP=68841,20;ReadPosRankSum=0.837;VarDP=20 GT:AD:DP:GQ:PL:SB 0/1:9,11,0:20:99:262,0,243,289,276,565:1,8,2,9 +chrX 3802226 . C . . END=3802238 GT:DP:GQ:MIN_DP:PL 0/0:20:32:19:0,32,530 +chrX 3802239 . T . . END=3802239 GT:DP:GQ:MIN_DP:PL 0/0:20:16:20:0,16,477 +chrX 3802240 . T . . END=3802298 GT:DP:GQ:MIN_DP:PL 0/0:18:39:18:0,39,536 +chrX 3802299 . T . . END=3802299 GT:DP:GQ:MIN_DP:PL 0/0:18:19:18:0,19,506 +chrX 3802300 . T . . END=3802330 GT:DP:GQ:MIN_DP:PL 0/0:17:34:16:0,34,440 +chrX 3802331 . A . . END=3802331 GT:DP:GQ:MIN_DP:PL 0/0:20:16:20:0,16,447 +chrX 3802332 . A . . END=3802332 GT:DP:GQ:MIN_DP:PL 0/0:31:68:31:0,68,918 +chrX 3802333 . G . . END=3802333 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,751 +chrX 3802334 . C . . END=3802335 GT:DP:GQ:MIN_DP:PL 0/0:31:84:31:0,84,953 +chrX 3802336 . T . . END=3802336 GT:DP:GQ:MIN_DP:PL 0/0:33:1:33:0,1,839 +chrX 3802337 . C . . END=3802340 GT:DP:GQ:MIN_DP:PL 0/0:37:93:37:0,93,1395 +chrX 3802341 . T . . END=3802341 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,804 +chrX 3802342 . A . . END=3802347 GT:DP:GQ:MIN_DP:PL 0/0:33:25:33:0,25,857 +chrX 3802348 . T . . END=3802348 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,859 +chrX 3802349 . C . . END=3802352 GT:DP:GQ:MIN_DP:PL 0/0:36:75:36:0,75,1125 +chrX 3802353 . T . . END=3802353 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,745 +chrX 3802354 . A . . END=3802377 GT:DP:GQ:MIN_DP:PL 0/0:28:42:28:0,42,753 +chrX 3802378 . A . . END=3802385 GT:DP:GQ:MIN_DP:PL 0/0:29:0:29:0,0,413 +chrX 3802386 . C . . END=3802386 GT:DP:GQ:MIN_DP:PL 0/0:30:20:30:0,20,833 +chrX 3802387 . T . . END=3802388 GT:DP:GQ:MIN_DP:PL 0/0:27:0:27:0,0,363 +chrX 3802389 . T . . END=3802454 GT:DP:GQ:MIN_DP:PL 0/0:32:35:28:0,35,692 +chrX 3802455 . C T, 581.64 . AS_QUALapprox=|589|0;AS_VarDP=18|22|0;BaseQRankSum=-1.855;DP=40;MQRankSum=0.000;QUALapprox=589;RAW_GT_COUNT=0,1,0;RAW_MQandDP=144000,40;ReadPosRankSum=-0.830;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:18,22,0:40:99:589,0,506,644,571,1215:6,12,11,11 +chrX 3802456 . G . . END=3802558 GT:DP:GQ:MIN_DP:PL 0/0:49:87:49:0,87,1217 +chrX 3802559 . A T, 645.64 . AS_QUALapprox=|653|0;AS_VarDP=23|24|0;BaseQRankSum=-0.717;DP=50;MQRankSum=0.000;QUALapprox=653;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=-0.362;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:23,24,0:47:99:653,0,623,722,696,1417:16,7,13,11 +chrX 3802560 . G . . END=3803018 GT:DP:GQ:MIN_DP:PL 0/0:59:83:59:0,83,1681 +chrX 3803019 . A G, 539.64 . AS_QUALapprox=|547|0;AS_VarDP=29|22|0;BaseQRankSum=0.090;DP=53;MQRankSum=0.000;QUALapprox=547;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=0.371;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:29,22,0:51:99:547,0,770,634,836,1470:12,17,10,12 +chrX 3803020 . G . . END=3803296 GT:DP:GQ:MIN_DP:PL 0/0:54:77:54:0,77,1349 +chrX 3803297 . C T, 454.64 . AS_QUALapprox=|462|0;AS_VarDP=35|20|0;BaseQRankSum=1.153;DP=60;MQRankSum=0.000;QUALapprox=462;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=0.884;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:35,20,0:55:99:462,0,878,565,937,1502:14,21,8,12 +chrX 3803298 . G . . END=3803330 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 3803331 . G A, 653.64 . AS_QUALapprox=|661|0;AS_VarDP=31|25|0;BaseQRankSum=0.384;DP=59;MQRankSum=0.000;QUALapprox=661;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-0.486;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:31,25,0:56:99:661,0,834,754,910,1663:11,20,13,12 +chrX 3803332 . C . . END=3803377 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 3803378 . TA T, 694.60 . AS_QUALapprox=|702|0;AS_VarDP=25|31|0;BaseQRankSum=-0.360;DP=65;MQRankSum=0.000;QUALapprox=702;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=0.519;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:25,31,0:56:99:702,0,515,777,608,1385:16,9,12,19 +chrX 3803380 . A . . END=3804412 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,108,1567 +chrX 3804413 . A G, 864.64 . AS_QUALapprox=|872|0;AS_VarDP=37|33|0;BaseQRankSum=0.075;DP=73;MQRankSum=-0.073;QUALapprox=872;RAW_GT_COUNT=0,1,0;RAW_MQandDP=255943,73;ReadPosRankSum=-0.800;VarDP=70 GT:AD:DP:GQ:PL:SB 0/1:37,33,0:70:99:872,0,1008,983,1107,2090:14,23,16,17 +chrX 3804414 . T . . END=3805345 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 3805346 . T C, 827.64 . AS_QUALapprox=|835|0;AS_VarDP=36|33|0;BaseQRankSum=0.524;DP=73;MQRankSum=0.000;QUALapprox=835;RAW_GT_COUNT=0,1,0;RAW_MQandDP=262800,73;ReadPosRankSum=2.151;VarDP=69 GT:AD:DP:GQ:PL:SB 0/1:36,33,0:69:99:835,0,909,943,1008,1951:22,14,16,17 +chrX 3805347 . G . . END=3805608 GT:DP:GQ:MIN_DP:PL 0/0:31:27:29:0,27,855 +chrX 3805609 . T . . END=3805611 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,612 +chrX 3805612 . C CA, 203.86 . AS_QUALapprox=|211|0;AS_VarDP=3|17|0;BaseQRankSum=0.000;DP=42;MQRankSum=-0.509;QUALapprox=211;RAW_GT_COUNT=0,1,0;RAW_MQandDP=143200,42;ReadPosRankSum=-1.622;VarDP=20 GT:AD:DP:GQ:PL:SB 0/1:3,17,0:20:2:211,0,2,220,50,270:3,0,2,15 +chrX 3805613 . A . . END=3805755 GT:DP:GQ:MIN_DP:PL 0/0:38:66:37:0,66,1125 +chrX 3805756 . A G, 895.64 . AS_QUALapprox=|903|0;AS_VarDP=27|34|0;BaseQRankSum=0.466;DP=61;MQRankSum=0.000;QUALapprox=903;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-0.080;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:27,34,0:61:99:903,0,676,984,777,1761:15,12,20,14 +chrX 3805757 . T . . END=3806761 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,114,1637 +chrX 3806762 . A T, 1011.64 . AS_QUALapprox=|1019|0;AS_VarDP=29|38|0;BaseQRankSum=-0.523;DP=69;MQRankSum=0.000;QUALapprox=1019;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=0.342;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:29,38,0:67:99:1019,0,747,1106,861,1967:17,12,21,17 +chrX 3806763 . G . . END=3807359 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 3807360 . A G, 883.64 . AS_QUALapprox=|891|0;AS_VarDP=36|34|0;BaseQRankSum=-1.020;DP=70;MQRankSum=0.000;QUALapprox=891;RAW_GT_COUNT=0,1,0;RAW_MQandDP=252000,70;ReadPosRankSum=0.200;VarDP=70 GT:AD:DP:GQ:PL:SB 0/1:36,34,0:70:99:891,0,991,999,1093,2092:22,14,14,20 +chrX 3807361 . C . . END=3808324 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,99,1484 +chrX 3808325 . T G, 942.64 . AS_QUALapprox=|950|0;AS_VarDP=30|34|0;BaseQRankSum=0.951;DP=65;MQRankSum=0.000;QUALapprox=950;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=1.272;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:30,34,0:64:99:950,0,774,1040,877,1916:11,19,20,14 +chrX 3808326 . G . . END=3808435 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,117,1557 +chrX 3808436 . G A, 667.64 . AS_QUALapprox=|675|0;AS_VarDP=22|26|0;BaseQRankSum=-1.463;DP=54;MQRankSum=0.000;QUALapprox=675;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=2.059;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:22,26,0:48:99:675,0,586,741,664,1405:11,11,12,14 +chrX 3808437 . T . . END=3808612 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,102,1261 +chrX 3808613 . G C, 436.64 . AS_QUALapprox=|444|0;AS_VarDP=21|18|0;BaseQRankSum=-0.692;DP=40;MQRankSum=0.000;QUALapprox=444;RAW_GT_COUNT=0,1,0;RAW_MQandDP=144000,40;ReadPosRankSum=0.226;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:21,18,0:39:99:444,0,572,507,626,1133:10,11,9,9 +chrX 3808614 . A . . END=3808975 GT:DP:GQ:MIN_DP:PL 0/0:54:86:54:0,86,1132 +chrX 3808976 . G T, 1183.64 . AS_QUALapprox=|1191|0;AS_VarDP=26|31|0;BaseQRankSum=-0.985;DP=59;MQRankSum=0.000;QUALapprox=1191;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-1.387;VarDP=57 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,31,0:57:99:0|1:3808976_G_T:1191,0,976,1269,1070,2339:3808976:10,16,17,14 +chrX 3808977 . T . . END=3808980 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 3808981 . G A, 1157.64 . AS_QUALapprox=|1165|0;AS_VarDP=24|30|0;BaseQRankSum=0.025;DP=56;MQRankSum=0.000;QUALapprox=1165;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-1.942;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,30,0:54:99:0|1:3808976_G_T:1165,0,917,1237,1008,2245:3808976:10,14,15,15 +chrX 3808982 . C . . END=3809352 GT:DP:GQ:MIN_DP:PL 0/0:51:56:51:0,56,872 +chrX 3809353 . T C, 740.64 . AS_QUALapprox=|748|0;AS_VarDP=23|27|0;BaseQRankSum=1.329;DP=52;MQRankSum=0.000;QUALapprox=748;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=0.633;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:23,27,0:50:99:748,0,579,817,660,1477:11,12,12,15 +chrX 3809354 . G . . END=3809466 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,110,1520 +chrX 3809467 . G A, 583.64 . AS_QUALapprox=|591|0;AS_VarDP=27|16|0;BaseQRankSum=1.395;DP=45;MQRankSum=0.000;QUALapprox=591;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=0.515;VarDP=43 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,16,0:43:99:0|1:3809467_G_A:591,0,1064,672,1112,1784:3809467:17,10,8,8 +chrX 3809468 . T . . END=3809470 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,120,1800 +chrX 3809471 . C G, 589.64 . AS_QUALapprox=|597|0;AS_VarDP=25|16|0;BaseQRankSum=1.182;DP=41;MQRankSum=0.000;QUALapprox=597;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147600,41;ReadPosRankSum=0.174;VarDP=41 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,16,0:41:99:0|1:3809467_G_A:597,0,1002,672,1050,1722:3809467:15,10,8,8 +chrX 3809472 . A . . END=3809805 GT:DP:GQ:MIN_DP:PL 0/0:53:88:53:0,88,1365 +chrX 3809806 . A C, 871.64 . AS_QUALapprox=|879|0;AS_VarDP=33|36|0;BaseQRankSum=-2.431;DP=71;MQRankSum=0.000;QUALapprox=879;RAW_GT_COUNT=0,1,0;RAW_MQandDP=255600,71;ReadPosRankSum=0.517;VarDP=69 GT:AD:DP:GQ:PL:SB 0/1:33,36,0:69:99:879,0,890,978,997,1975:17,16,19,17 +chrX 3809807 . C . . END=3810061 GT:DP:GQ:MIN_DP:PL 0/0:58:41:58:0,41,1422 +chrX 3810062 . G . . END=3810062 GT:DP:GQ:MIN_DP:PL 0/0:52:17:52:0,17,1399 +chrX 3810063 . G . . END=3810063 GT:DP:GQ:MIN_DP:PL 0/0:51:34:51:0,34,1395 +chrX 3810064 . G . . END=3810066 GT:DP:GQ:MIN_DP:PL 0/0:52:0:52:0,0,1200 +chrX 3810067 . A . . END=3810069 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 3810070 . G . . END=3810070 GT:DP:GQ:MIN_DP:PL 0/0:53:0:53:0,0,1157 +chrX 3810071 . A . . END=3810071 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 3810072 . G . . END=3810076 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,837 +chrX 3810077 . A . . END=3810078 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 3810079 . T . . END=3810079 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,774 +chrX 3810080 . C . . END=3810080 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 3810081 . C . . END=3810086 GT:DP:GQ:MIN_DP:PL 0/0:52:0:52:0,0,742 +chrX 3810087 . A . . END=3810112 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,102,1530 +chrX 3810113 . A AC, 718.60 . AS_QUALapprox=|726|0;AS_VarDP=19|19|0;BaseQRankSum=1.471;DP=40;MQRankSum=-1.748;QUALapprox=726;RAW_GT_COUNT=0,1,0;RAW_MQandDP=135306,40;ReadPosRankSum=-0.380;VarDP=38 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:19,19,0:38:99:0|1:3810113_A_AC:726,0,741,783,798,1581:3810113:11,8,12,7 +chrX 3810114 . A ACACACACACACACACACACAC, 715.60 . AS_QUALapprox=|723|0;AS_VarDP=20|19|0;BaseQRankSum=0.514;DP=41;MQRankSum=-1.794;QUALapprox=723;RAW_GT_COUNT=0,1,0;RAW_MQandDP=138906,41;ReadPosRankSum=-0.228;VarDP=39 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:20,19,0:39:99:0|1:3810113_A_AC:723,0,771,783,828,1611:3810113:12,8,12,7 +chrX 3810115 . A . . END=3810115 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1440 +chrX 3810116 . A C, 687.64 . AS_QUALapprox=|695|0;AS_VarDP=20|18|0;BaseQRankSum=1.662;DP=39;MQRankSum=-1.844;QUALapprox=695;RAW_GT_COUNT=0,1,0;RAW_MQandDP=134681,39;ReadPosRankSum=0.439;VarDP=38 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:20,18,0:38:99:0|1:3810113_A_AC:695,0,774,756,828,1584:3810113:12,8,11,7 +chrX 3810117 . C . . END=3810117 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,1126 +chrX 3810118 . C . . END=3810118 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,117,1755 +chrX 3810119 . G . . END=3810119 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,996 +chrX 3810120 . C . . END=3810121 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,120,1800 +chrX 3810122 . A . . END=3810123 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,1101 +chrX 3810124 . C . . END=3810126 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,120,1800 +chrX 3810127 . T . . END=3810131 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,1056 +chrX 3810132 . C . . END=3810134 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,120,1800 +chrX 3810135 . C . . END=3810136 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,1087 +chrX 3810137 . A . . END=3810383 GT:DP:GQ:MIN_DP:PL 0/0:46:34:43:0,34,1087 +chrX 3810384 . T C, 670.64 . AS_QUALapprox=|678|0;AS_VarDP=32|25|0;BaseQRankSum=1.163;DP=58;MQRankSum=0.919;QUALapprox=678;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208225,58;ReadPosRankSum=1.593;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:32,25,0:57:99:678,0,878,774,953,1727:14,18,14,11 +chrX 3810385 . T . . END=3810433 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 3810434 . T TC, 957.60 . AS_QUALapprox=|965|0;AS_VarDP=27|28|0;BaseQRankSum=-0.148;DP=63;MQRankSum=-0.946;QUALapprox=965;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223994,63;ReadPosRankSum=-0.337;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:27,28,0:55:99:965,0,856,1046,940,1986:17,10,17,11 +chrX 3810435 . T . . END=3810817 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 3810818 . T C, 862.64 . AS_QUALapprox=|870|0;AS_VarDP=38|34|0;BaseQRankSum=-0.804;DP=74;MQRankSum=0.000;QUALapprox=870;RAW_GT_COUNT=0,1,0;RAW_MQandDP=266400,74;ReadPosRankSum=0.587;VarDP=72 GT:AD:DP:GQ:PL:SB 0/1:38,34,0:72:99:870,0,1064,985,1166,2150:15,23,14,20 +chrX 3810819 . A . . END=3811335 GT:DP:GQ:MIN_DP:PL 0/0:59:57:59:0,57,1429 +chrX 3811336 . C T, 1407.64 . AS_QUALapprox=|1415|0;AS_VarDP=32|36|0;BaseQRankSum=2.819;DP=69;MQRankSum=-0.913;QUALapprox=1415;RAW_GT_COUNT=0,1,0;RAW_MQandDP=247936,69;ReadPosRankSum=-0.025;VarDP=68 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:32,36,0:68:99:0|1:3811336_C_T:1415,0,1235,1512,1343,2855:3811336:16,16,17,19 +chrX 3811337 . A G, 1407.64 . AS_QUALapprox=|1415|0;AS_VarDP=32|36|0;BaseQRankSum=3.003;DP=68;MQRankSum=-0.913;QUALapprox=1415;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244336,68;ReadPosRankSum=0.061;VarDP=68 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:32,36,0:68:99:0|1:3811336_C_T:1415,0,1235,1512,1343,2855:3811336:16,16,17,19 +chrX 3811338 . A . . END=3811495 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,115,1621 +chrX 3811496 . T C, 791.64 . AS_QUALapprox=|799|0;AS_VarDP=28|23|0;BaseQRankSum=-1.624;DP=53;MQRankSum=0.000;QUALapprox=799;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=-1.036;VarDP=51 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,23,0:51:99:0|1:3811496_T_C:799,0,1045,883,1114,1997:3811496:16,12,13,10 +chrX 3811497 . G . . END=3811515 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,107,1534 +chrX 3811516 . G A, 790.64 . AS_QUALapprox=|798|0;AS_VarDP=29|23|0;BaseQRankSum=-0.259;DP=52;MQRankSum=0.000;QUALapprox=798;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=0.848;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,23,0:52:99:0|1:3811496_T_C:798,0,1057,885,1126,2011:3811496:19,10,15,8 +chrX 3811517 . C . . END=3811583 GT:DP:GQ:MIN_DP:PL 0/0:46:92:46:0,92,1169 +chrX 3811584 . C T, 514.64 . AS_QUALapprox=|522|0;AS_VarDP=25|21|0;BaseQRankSum=-0.477;DP=47;MQRankSum=0.000;QUALapprox=522;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=-0.221;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:25,21,0:46:99:522,0,636,597,699,1296:11,14,10,11 +chrX 3811585 . C . . END=3811841 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,104,1564 +chrX 3811842 . G A, 912.64 . AS_QUALapprox=|920|0;AS_VarDP=22|32|0;BaseQRankSum=1.400;DP=56;MQRankSum=0.000;QUALapprox=920;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=1.198;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:22,32,0:54:99:920,0,538,986,634,1620:13,9,19,13 +chrX 3811843 . A . . END=3811901 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 3811902 . C A, 945.64 . AS_QUALapprox=|953|0;AS_VarDP=24|37|0;BaseQRankSum=-1.793;DP=63;MQRankSum=0.000;QUALapprox=953;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=-1.927;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:24,37,0:61:99:953,0,622,1025,732,1757:15,9,17,20 +chrX 3811903 . A . . END=3812023 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1563 +chrX 3812024 . T C, 645.64 . AS_QUALapprox=|653|0;AS_VarDP=22|25|0;BaseQRankSum=0.183;DP=47;MQRankSum=0.000;QUALapprox=653;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=-0.661;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:22,25,0:47:99:653,0,563,719,638,1357:11,11,12,13 +chrX 3812025 . G . . END=3812168 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,107,1389 +chrX 3812169 . C T, 719.64 . AS_QUALapprox=|727|0;AS_VarDP=23|26|0;BaseQRankSum=0.643;DP=49;MQRankSum=0.000;QUALapprox=727;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=-0.812;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:23,26,0:49:99:727,0,597,795,676,1471:13,10,13,13 +chrX 3812170 . G . . END=3812302 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,112,1657 +chrX 3812303 . T C, 705.64 . AS_QUALapprox=|713|0;AS_VarDP=31|26|0;BaseQRankSum=0.310;DP=58;MQRankSum=0.951;QUALapprox=713;RAW_GT_COUNT=0,1,0;RAW_MQandDP=207801,58;ReadPosRankSum=0.088;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:31,26,0:57:99:713,0,861,806,940,1745:19,12,14,12 +chrX 3812304 . T . . END=3812450 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,116,1743 +chrX 3812451 . C T, 596.64 . AS_QUALapprox=|604|0;AS_VarDP=28|22|0;BaseQRankSum=1.954;DP=51;MQRankSum=0.000;QUALapprox=604;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-1.124;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:28,22,0:50:99:604,0,753,689,819,1508:13,15,7,15 +chrX 3812452 . G . . END=3813167 GT:DP:GQ:MIN_DP:PL 0/0:63:69:63:0,69,1215 +chrX 3813168 . A G, 782.64 . AS_QUALapprox=|790|0;AS_VarDP=24|30|0;BaseQRankSum=-1.934;DP=54;MQRankSum=0.000;QUALapprox=790;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=-1.472;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:24,30,0:54:99:790,0,652,862,742,1604:8,16,12,18 +chrX 3813169 . T . . END=3813179 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 3813180 . A AT, 609.60 . AS_QUALapprox=|617|0;AS_VarDP=27|28|0;BaseQRankSum=-0.060;DP=59;MQRankSum=0.000;QUALapprox=617;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-0.244;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:27,28,0:55:99:617,0,586,699,670,1368:10,17,14,14 +chrX 3813181 . T . . END=3814207 GT:DP:GQ:MIN_DP:PL 0/0:47:46:47:0,46,993 +chrX 3814208 . A G, 568.64 . AS_QUALapprox=|576|0;AS_VarDP=17|21|0;BaseQRankSum=-0.581;DP=39;MQRankSum=0.000;QUALapprox=576;RAW_GT_COUNT=0,1,0;RAW_MQandDP=140400,39;ReadPosRankSum=0.059;VarDP=38 GT:AD:DP:GQ:PL:SB 0/1:17,21,0:38:99:576,0,457,627,520,1147:12,5,12,9 +chrX 3814209 . G . . END=3814274 GT:DP:GQ:MIN_DP:PL 0/0:32:63:32:0,63,945 +chrX 3814275 . C CA, 365.60 . AS_QUALapprox=|373|0;AS_VarDP=6|20|0;BaseQRankSum=-1.480;DP=42;MQRankSum=-0.932;QUALapprox=373;RAW_GT_COUNT=0,1,0;RAW_MQandDP=145848,42;ReadPosRankSum=0.402;VarDP=26 GT:AD:DP:GQ:PL:SB 0/1:6,20,0:26:69:373,0,69,392,128,519:3,3,7,13 +chrX 3814276 . A . . END=3814290 GT:DP:GQ:MIN_DP:PL 0/0:40:84:40:0,84,1260 +chrX 3814291 . G GA, 472.60 . AS_QUALapprox=|480|0;AS_VarDP=11|21|0;BaseQRankSum=-0.701;DP=42;MQRankSum=-1.255;QUALapprox=480;RAW_GT_COUNT=0,1,0;RAW_MQandDP=145848,42;ReadPosRankSum=0.516;VarDP=32 GT:AD:DP:GQ:PL:SB 0/1:11,21,0:32:99:480,0,196,513,259,772:1,10,9,12 +chrX 3814292 . A . . END=3814301 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,103,1647 +chrX 3814302 . T . . END=3814302 GT:DP:GQ:MIN_DP:PL 0/0:44:3:44:0,3,1140 +chrX 3814303 . C . . END=3814792 GT:DP:GQ:MIN_DP:PL 0/0:56:57:56:0,57,1280 +chrX 3814793 . C T, 830.64 . AS_QUALapprox=|838|0;AS_VarDP=35|30|0;BaseQRankSum=2.898;DP=68;MQRankSum=0.000;QUALapprox=838;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=-0.830;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:35,30,0:65:99:838,0,911,943,1001,1944:17,18,12,18 +chrX 3814794 . G . . END=3814896 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 3814897 . G C, 467.64 . AS_QUALapprox=|475|0;AS_VarDP=36|19|0;BaseQRankSum=1.878;DP=56;MQRankSum=0.000;QUALapprox=475;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-0.381;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:36,19,0:55:99:475,0,936,582,993,1575:21,15,7,12 +chrX 3814898 . A . . END=3815161 GT:DP:GQ:MIN_DP:PL 0/0:59:97:59:0,97,1449 +chrX 3815162 . G A, 733.64 . AS_QUALapprox=|741|0;AS_VarDP=39|27|0;BaseQRankSum=2.671;DP=69;MQRankSum=0.000;QUALapprox=741;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=0.411;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:39,27,0:66:99:741,0,1037,857,1119,1976:23,16,17,10 +chrX 3815163 . G . . END=3815618 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,101,1380 +chrX 3815619 . AGCGGGTGCC A, 1184.60 . AS_QUALapprox=|1192|0;AS_VarDP=44|32|0;BaseQRankSum=0.064;DP=85;MQRankSum=0.000;QUALapprox=1192;RAW_GT_COUNT=0,1,0;RAW_MQandDP=306000,85;ReadPosRankSum=0.703;VarDP=76 GT:AD:DP:GQ:PL:SB 0/1:44,32,0:76:99:1192,0,1708,1324,1805,3130:22,22,19,13 +chrX 3815629 . G . . END=3815650 GT:DP:GQ:MIN_DP:PL 0/0:77:99:77:0,120,1800 +chrX 3815651 . G T, 740.64 . AS_QUALapprox=|748|0;AS_VarDP=47|30|0;BaseQRankSum=2.340;DP=78;MQRankSum=0.000;QUALapprox=748;RAW_GT_COUNT=0,1,0;RAW_MQandDP=280800,78;ReadPosRankSum=0.716;VarDP=77 GT:AD:DP:GQ:PL:SB 0/1:47,30,0:77:99:748,0,1143,888,1233,2121:26,21,19,11 +chrX 3815652 . C . . END=3816539 GT:DP:GQ:MIN_DP:PL 0/0:69:61:69:0,61,878 +chrX 3816540 . G A, 434.64 . AS_QUALapprox=|442|0;AS_VarDP=22|17|0;BaseQRankSum=0.718;DP=42;MQRankSum=0.000;QUALapprox=442;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151200,42;ReadPosRankSum=-0.737;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:22,17,0:39:99:442,0,582,509,634,1142:14,8,12,5 +chrX 3816541 . G . . END=3817690 GT:DP:GQ:MIN_DP:PL 0/0:55:83:55:0,83,1290 +chrX 3817691 . G A, 700.64 . AS_QUALapprox=|708|0;AS_VarDP=34|27|0;BaseQRankSum=1.400;DP=62;MQRankSum=-1.577;QUALapprox=708;RAW_GT_COUNT=0,1,0;RAW_MQandDP=221300,62;ReadPosRankSum=0.385;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:34,27,0:61:99:708,0,907,810,988,1798:17,17,12,15 +chrX 3817692 . A . . END=3818447 GT:DP:GQ:MIN_DP:PL 0/0:57:96:57:0,96,1439 +chrX 3818448 . C T, 596.64 . AS_QUALapprox=|604|0;AS_VarDP=27|23|0;BaseQRankSum=0.129;DP=51;MQRankSum=0.000;QUALapprox=604;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-0.535;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:27,23,0:50:99:604,0,747,686,816,1502:12,15,9,14 +chrX 3818449 . G . . END=3818891 GT:DP:GQ:MIN_DP:PL 0/0:47:32:41:0,32,1080 +chrX 3818892 . C CTTTTTTTTTTTTTT, 426.60 . AS_QUALapprox=|434|0;AS_VarDP=19|12|0;BaseQRankSum=-1.819;DP=35;MQRankSum=-1.761;QUALapprox=434;RAW_GT_COUNT=0,1,0;RAW_MQandDP=123209,35;ReadPosRankSum=-1.907;VarDP=31 GT:AD:DP:GQ:PL:SB 0/1:19,12,0:31:99:434,0,729,491,766,1257:10,9,5,7 +chrX 3818893 . T . . END=3818900 GT:DP:GQ:MIN_DP:PL 0/0:35:75:35:0,75,1125 +chrX 3818901 . G . . END=3818901 GT:DP:GQ:MIN_DP:PL 0/0:34:4:34:0,4,905 +chrX 3818902 . A . . END=3818959 GT:DP:GQ:MIN_DP:PL 0/0:33:68:33:0,68,978 +chrX 3818960 . G A, 713.64 . AS_QUALapprox=|721|0;AS_VarDP=9|25|0;BaseQRankSum=1.356;DP=37;MQRankSum=1.733;QUALapprox=721;RAW_GT_COUNT=0,1,0;RAW_MQandDP=132409,37;ReadPosRankSum=-1.406;VarDP=34 GT:AD:DP:GQ:PL:SB 0/1:9,25,0:34:99:721,0,181,748,256,1004:5,4,12,13 +chrX 3818961 . C . . END=3820006 GT:DP:GQ:MIN_DP:PL 0/0:62:78:62:0,78,1126 +chrX 3820007 . T C, 1845.06 . AS_QUALapprox=|1859|0;AS_VarDP=0|58|0;DP=59;QUALapprox=1859;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=58 GT:AD:DP:GQ:PL:SB 1/1:0,58,0:58:99:1859,174,0,1859,174,1859:0,0,28,30 +chrX 3820008 . C . . END=3820113 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 3820114 . A G, 680.64 . AS_QUALapprox=|688|0;AS_VarDP=35|27|0;BaseQRankSum=-0.444;DP=64;MQRankSum=0.000;QUALapprox=688;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=1.492;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:35,27,0:62:99:688,0,932,792,1012,1804:20,15,10,17 +chrX 3820115 . T . . END=3820462 GT:DP:GQ:MIN_DP:PL 0/0:64:90:64:0,90,1619 +chrX 3820463 . C T, 1891.06 . AS_QUALapprox=|1905|0;AS_VarDP=0|59|0;DP=61;QUALapprox=1905;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1905,177,0,1905,177,1905:0,0,25,34 +chrX 3820464 . T . . END=3820545 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 3820546 . A AAAAAAC, 2257.03 . AS_QUALapprox=|2271|0;AS_VarDP=0|51|0;DP=65;QUALapprox=2271;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:2271,153,0,2272,154,2272:0,0,23,28 +chrX 3820547 . A . . END=3820566 GT:DP:GQ:MIN_DP:PL 0/0:74:99:74:0,120,1800 +chrX 3820567 . G . . END=3820567 GT:DP:GQ:MIN_DP:PL 0/0:69:0:69:0,0,1683 +chrX 3820568 . A . . END=3820568 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,120,1800 +chrX 3820569 . T . . END=3820570 GT:DP:GQ:MIN_DP:PL 0/0:69:0:69:0,0,1597 +chrX 3820571 . G . . END=3821035 GT:DP:GQ:MIN_DP:PL 0/0:51:57:51:0,57,1097 +chrX 3821036 . A G, 520.64 . AS_QUALapprox=|528|0;AS_VarDP=29|20|0;BaseQRankSum=1.001;DP=53;MQRankSum=0.000;QUALapprox=528;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=-0.356;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:29,20,0:49:99:528,0,801,615,861,1476:20,9,7,13 +chrX 3821037 . T . . END=3821544 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,103,1190 +chrX 3821545 . G A, 296.64 . AS_QUALapprox=|304|0;AS_VarDP=27|14|0;BaseQRankSum=0.073;DP=44;MQRankSum=0.000;QUALapprox=304;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=-0.014;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:27,14,0:41:99:304,0,746,385,787,1172:9,18,6,8 +chrX 3821546 . T . . END=3821670 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,100,1281 +chrX 3821671 . ATCTAC A, 802.60 . AS_QUALapprox=|810|0;AS_VarDP=24|21|0;BaseQRankSum=0.025;DP=46;MQRankSum=-1.676;QUALapprox=810;RAW_GT_COUNT=0,1,0;RAW_MQandDP=140365,46;ReadPosRankSum=-1.045;VarDP=45 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,21,0:45:99:0|1:3821671_ATCTAC_A:810,0,934,882,997,1879:3821671:16,8,13,8 +chrX 3821677 . T . . END=3821685 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,118,1441 +chrX 3821686 . T C, 895.64 . AS_QUALapprox=|903|0;AS_VarDP=24|24|0;BaseQRankSum=0.387;DP=49;MQRankSum=-2.128;QUALapprox=903;RAW_GT_COUNT=0,1,0;RAW_MQandDP=143501,49;ReadPosRankSum=-1.093;VarDP=48 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,24,0:48:99:0|1:3821671_ATCTAC_A:903,0,915,976,987,1963:3821671:16,8,14,10 +chrX 3821687 . C . . END=3822733 GT:DP:GQ:MIN_DP:PL 0/0:53:84:53:0,84,1107 +chrX 3822734 . AGTGT A, 1034.60 . AS_QUALapprox=|1042|0;AS_VarDP=27|27|0;BaseQRankSum=-0.224;DP=56;MQRankSum=-1.401;QUALapprox=1042;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194798,56;ReadPosRankSum=1.375;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:27,27,0:54:99:1042,0,1021,1123,1102,2226:10,17,14,13 +chrX 3822739 . G . . END=3822865 GT:DP:GQ:MIN_DP:PL 0/0:57:35:56:0,35,1547 +chrX 3822866 . A . . END=3822867 GT:DP:GQ:MIN_DP:PL 0/0:58:0:58:0,0,1487 +chrX 3822868 . G . . END=3822869 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 3822870 . C CTGTG,CTGTGTGTGTG, 2121.02 . AS_QUALapprox=|1263|1115|0;AS_VarDP=0|26|23|0;DP=57;QUALapprox=2138;RAW_GT_COUNT=0,0,1;RAW_MQandDP=185886,57;VarDP=49 GT:AD:DP:GQ:PL:SB 1/2:0,26,23,0:49:99:2138,962,875,1098,0,1023,2100,961,1098,2092:0,0,27,22 +chrX 3822871 . T . . END=3822911 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 3822912 . G A, 754.64 . AS_QUALapprox=|762|0;AS_VarDP=30|30|0;BaseQRankSum=-0.455;DP=61;MQRankSum=-3.285;QUALapprox=762;RAW_GT_COUNT=0,1,0;RAW_MQandDP=206676,61;ReadPosRankSum=0.873;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:30,30,0:60:99:762,0,767,852,857,1709:15,15,18,12 +chrX 3822913 . C . . END=3822939 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 3822940 . AGTGT A, 1252.60 . AS_QUALapprox=|1260|0;AS_VarDP=28|32|0;BaseQRankSum=-1.404;DP=67;MQRankSum=-3.376;QUALapprox=1260;RAW_GT_COUNT=0,1,0;RAW_MQandDP=228512,67;ReadPosRankSum=0.111;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:28,32,0:60:99:1260,0,1079,1344,1176,2520:15,13,15,17 +chrX 3822945 . G . . END=3823328 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,115,1538 +chrX 3823329 . T G, 730.64 . AS_QUALapprox=|738|0;AS_VarDP=26|27|0;BaseQRankSum=1.986;DP=53;MQRankSum=-0.809;QUALapprox=738;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180125,53;ReadPosRankSum=-0.089;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:26,27,0:53:99:738,0,628,816,709,1525:14,12,12,15 +chrX 3823330 . G . . END=3824137 GT:DP:GQ:MIN_DP:PL 0/0:12:21:9:0,21,307 +chrX 3824138 . A . . END=3824472 GT:DP:GQ:MIN_DP:PL 0/0:4:0:4:0,0,55 +chrX 3824473 . T . . END=3824474 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,223 +chrX 3824475 . G . . END=3824475 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,209 +chrX 3824476 . G . . END=3824480 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,223 +chrX 3824481 . C . . END=3824565 GT:DP:GQ:MIN_DP:PL 0/0:6:12:6:0,12,139 +chrX 3824566 . T . . END=3824601 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,233 +chrX 3824602 . T . . END=3824609 GT:DP:GQ:MIN_DP:PL 0/0:7:18:7:0,18,270 +chrX 3824610 . T . . END=3824651 GT:DP:GQ:MIN_DP:PL 0/0:15:21:8:0,21,223 +chrX 3824652 . A . . END=3824652 GT:DP:GQ:MIN_DP:PL 0/0:17:16:17:0,16,501 +chrX 3824653 . T . . END=3825390 GT:DP:GQ:MIN_DP:PL 0/0:44:46:44:0,46,561 +chrX 3825391 . C T, 810.64 . AS_QUALapprox=|818|0;AS_VarDP=17|31|0;BaseQRankSum=-0.848;DP=49;MQRankSum=-0.952;QUALapprox=818;RAW_GT_COUNT=0,1,0;RAW_MQandDP=81874,49;ReadPosRankSum=0.647;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:17,31,0:48:99:818,0,402,869,495,1364:11,6,14,17 +chrX 3825392 . G . . END=3825531 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 3825532 . T C, 303.64 . AS_QUALapprox=|311|0;AS_VarDP=31|14|0;BaseQRankSum=0.899;DP=47;MQRankSum=-5.113;QUALapprox=311;RAW_GT_COUNT=0,1,0;RAW_MQandDP=116276,47;ReadPosRankSum=1.202;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:31,14,0:45:99:311,0,842,404,884,1287:16,15,10,4 +chrX 3825533 . G . . END=3825559 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,118,1390 +chrX 3825560 . T G, 1055.64 . AS_QUALapprox=|1063|0;AS_VarDP=15|36|0;BaseQRankSum=-1.116;DP=55;MQRankSum=5.142;QUALapprox=1063;RAW_GT_COUNT=0,1,0;RAW_MQandDP=126522,55;ReadPosRankSum=0.714;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:15,36,0:51:99:1063,0,352,1108,460,1569:12,3,18,18 +chrX 3825561 . G . . END=3825593 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 3825594 . T C, 482.64 . AS_QUALapprox=|490|0;AS_VarDP=33|24|0;BaseQRankSum=-3.286;DP=57;MQRankSum=-2.491;QUALapprox=490;RAW_GT_COUNT=0,1,0;RAW_MQandDP=133694,57;ReadPosRankSum=-2.757;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:33,24,0:57:99:490,0,937,589,1007,1596:15,18,11,13 +chrX 3825595 . G . . END=3826401 GT:DP:GQ:MIN_DP:PL 0/0:54:65:54:0,65,1003 +chrX 3826402 . TA T, 412.60 . AS_QUALapprox=|420|0;AS_VarDP=21|21|0;BaseQRankSum=0.465;DP=49;MQRankSum=0.676;QUALapprox=420;RAW_GT_COUNT=0,1,0;RAW_MQandDP=167866,49;ReadPosRankSum=-0.768;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:21,21,0:42:99:420,0,397,482,460,943:9,12,11,10 +chrX 3826404 . A . . END=3826731 GT:DP:GQ:MIN_DP:PL 0/0:43:36:40:0,36,1055 +chrX 3826732 . G GA, 299.60 . AS_QUALapprox=|307|0;AS_VarDP=19|17|0;BaseQRankSum=1.465;DP=49;MQRankSum=-2.254;QUALapprox=307;RAW_GT_COUNT=0,1,0;RAW_MQandDP=160367,49;ReadPosRankSum=-0.111;VarDP=36 GT:AD:DP:GQ:PL:SB 0/1:19,17,0:36:99:307,0,354,364,405,769:8,11,7,10 +chrX 3826733 . A . . END=3826991 GT:DP:GQ:MIN_DP:PL 0/0:59:79:59:0,79,1575 +chrX 3826992 . A G, 866.64 . AS_QUALapprox=|874|0;AS_VarDP=27|23|0;BaseQRankSum=-0.141;DP=52;MQRankSum=-6.503;QUALapprox=874;RAW_GT_COUNT=0,1,0;RAW_MQandDP=134847,52;ReadPosRankSum=-0.561;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,23,0:50:99:0|1:3826992_A_G:874,0,1034,956,1103,2059:3826992:11,16,14,9 +chrX 3826993 . A . . END=3827001 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 3827002 . G T, 946.64 . AS_QUALapprox=|954|0;AS_VarDP=27|26|0;BaseQRankSum=-0.803;DP=55;MQRankSum=-6.704;QUALapprox=954;RAW_GT_COUNT=0,1,0;RAW_MQandDP=143734,55;ReadPosRankSum=-0.507;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,26,0:53:99:0|1:3826992_A_G:954,0,1025,1036,1103,2139:3826992:9,18,16,10 +chrX 3827003 . G . . END=3827239 GT:DP:GQ:MIN_DP:PL 0/0:59:92:59:0,92,1620 +chrX 3827240 . CCA C, 1059.60 . AS_QUALapprox=|1067|0;AS_VarDP=22|27|0;BaseQRankSum=1.479;DP=50;MQRankSum=-5.351;QUALapprox=1067;RAW_GT_COUNT=0,1,0;RAW_MQandDP=141602,50;ReadPosRankSum=1.358;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:22,27,0:49:99:1067,0,794,1133,875,2008:9,13,16,11 +chrX 3827243 . C . . END=3827278 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 3827279 . T C, 745.64 . AS_QUALapprox=|753|0;AS_VarDP=19|29|0;BaseQRankSum=-1.298;DP=51;MQRankSum=-2.957;QUALapprox=753;RAW_GT_COUNT=0,1,0;RAW_MQandDP=121367,51;ReadPosRankSum=0.432;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:19,29,0:48:99:753,0,469,810,556,1366:3,16,12,17 +chrX 3827280 . T . . END=3827552 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,99,1300 +chrX 3827553 . A G, 254.64 . AS_QUALapprox=|262|0;AS_VarDP=34|12|0;BaseQRankSum=1.415;DP=49;MQRankSum=-6.115;QUALapprox=262;RAW_GT_COUNT=0,1,0;RAW_MQandDP=141965,49;ReadPosRankSum=0.738;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:34,12,0:46:99:262,0,992,365,1028,1393:13,21,4,8 +chrX 3827554 . G . . END=3828207 GT:DP:GQ:MIN_DP:PL 0/0:56:72:56:0,72,1052 +chrX 3828208 . G A, 106.64 . AS_QUALapprox=|114|0;AS_VarDP=28|5|0;BaseQRankSum=1.072;DP=34;MQRankSum=-4.643;QUALapprox=114;RAW_GT_COUNT=0,1,0;RAW_MQandDP=105084,34;ReadPosRankSum=-2.545;VarDP=33 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,5,0:33:99:0|1:3828208_G_A:114,0,1128,199,1143,1342:3828208:12,16,1,4 +chrX 3828209 . G . . END=3828211 GT:DP:GQ:MIN_DP:PL 0/0:31:78:31:0,78,1170 +chrX 3828212 . G T, 105.64 . AS_QUALapprox=|113|0;AS_VarDP=27|5|0;BaseQRankSum=1.637;DP=32;MQRankSum=-4.810;QUALapprox=113;RAW_GT_COUNT=0,1,0;RAW_MQandDP=100903,32;ReadPosRankSum=-2.909;VarDP=32 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,5,0:32:99:0|1:3828208_G_A:113,0,1098,195,1113,1307:3828208:12,15,2,3 +chrX 3828213 . A . . END=3828245 GT:DP:GQ:MIN_DP:PL 0/0:27:51:27:0,51,755 +chrX 3828246 . G . . END=3828246 GT:DP:GQ:MIN_DP:PL 0/0:26:16:26:0,16,574 +chrX 3828247 . A . . END=3828516 GT:DP:GQ:MIN_DP:PL 0/0:39:77:39:0,77,972 +chrX 3828517 . C T, 2117.06 . AS_QUALapprox=|2131|0;AS_VarDP=0|62|0;DP=62;QUALapprox=2131;RAW_GT_COUNT=0,0,1;RAW_MQandDP=191258,62;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:0,62,0:62:99:2131,187,0,2131,187,2131:0,0,41,21 +chrX 3828518 . G . . END=3829043 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,113,1578 +chrX 3829044 . A G, 642.64 . AS_QUALapprox=|650|0;AS_VarDP=27|26|0;BaseQRankSum=-2.060;DP=55;MQRankSum=-6.014;QUALapprox=650;RAW_GT_COUNT=0,1,0;RAW_MQandDP=139266,55;ReadPosRankSum=-1.914;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:27,26,0:53:99:650,0,768,731,846,1577:16,11,17,9 +chrX 3829045 . A . . END=3829198 GT:DP:GQ:MIN_DP:PL 0/0:54:73:54:0,73,1132 +chrX 3829199 . G A, 501.64 . AS_QUALapprox=|509|0;AS_VarDP=14|18|0;BaseQRankSum=0.865;DP=33;MQRankSum=1.302;QUALapprox=509;RAW_GT_COUNT=0,1,0;RAW_MQandDP=55650,33;ReadPosRankSum=-1.083;VarDP=32 GT:AD:DP:GQ:PL:SB 0/1:14,18,0:32:99:509,0,355,551,410,960:5,9,7,11 +chrX 3829200 . G . . END=3829330 GT:DP:GQ:MIN_DP:PL 0/0:42:77:42:0,77,1052 +chrX 3829331 . C T, 737.64 . AS_QUALapprox=|745|0;AS_VarDP=24|26|0;BaseQRankSum=1.516;DP=51;MQRankSum=-2.793;QUALapprox=745;RAW_GT_COUNT=0,1,0;RAW_MQandDP=120399,51;ReadPosRankSum=0.563;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:24,26,0:50:99:745,0,654,817,732,1549:13,11,14,12 +chrX 3829332 . C . . END=3830216 GT:DP:GQ:MIN_DP:PL 0/0:20:25:14:0,25,367 +chrX 3830217 . A . . END=3830217 GT:DP:GQ:MIN_DP:PL 0/0:16:13:16:0,13,427 +chrX 3830218 . A . . END=3830275 GT:DP:GQ:MIN_DP:PL 0/0:15:33:13:0,33,397 +chrX 3830276 . C . . END=3830276 GT:DP:GQ:MIN_DP:PL 0/0:16:13:16:0,13,436 +chrX 3830277 . T . . END=3830288 GT:DP:GQ:MIN_DP:PL 0/0:15:20:14:0,20,397 +chrX 3830289 . C . . END=3830289 GT:DP:GQ:MIN_DP:PL 0/0:12:11:12:0,11,317 +chrX 3830290 . T . . END=3830315 GT:DP:GQ:MIN_DP:PL 0/0:13:21:12:0,21,328 +chrX 3830316 . T . . END=3830316 GT:DP:GQ:MIN_DP:PL 0/0:13:14:13:0,14,352 +chrX 3830317 . T . . END=3830332 GT:DP:GQ:MIN_DP:PL 0/0:13:21:13:0,21,315 +chrX 3830333 . G . . END=3830336 GT:DP:GQ:MIN_DP:PL 0/0:8:6:8:0,6,143 +chrX 3830337 . A . . END=3830338 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,203 +chrX 3830339 . G . . END=3830339 GT:DP:GQ:MIN_DP:PL 0/0:3:9:3:0,9,104 +chrX 3830340 . G . . END=3830341 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,213 +chrX 3830342 . C . . END=3830352 GT:DP:GQ:MIN_DP:PL 0/0:7:10:7:0,10,133 +chrX 3830353 . G . . END=3830353 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,315 +chrX 3830354 . G . . END=3830354 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,139 +chrX 3830355 . C . . END=3830359 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,182 +chrX 3830360 . C . . END=3830360 GT:DP:GQ:MIN_DP:PL 0/0:7:0:7:0,0,164 +chrX 3830361 . T . . END=3830369 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,223 +chrX 3830370 . G . . END=3830370 GT:DP:GQ:MIN_DP:PL 0/0:5:15:5:0,15,174 +chrX 3830371 . T . . END=3830381 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,213 +chrX 3830382 . T . . END=3830383 GT:DP:GQ:MIN_DP:PL 0/0:7:0:7:0,0,124 +chrX 3830384 . G . . END=3830386 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,213 +chrX 3830387 . C . . END=3830388 GT:DP:GQ:MIN_DP:PL 0/0:7:18:7:0,18,270 +chrX 3830389 . C T, 111.13 . AS_QUALapprox=|125|0;AS_VarDP=0|4|0;DP=4;QUALapprox=125;RAW_GT_COUNT=0,0,1;RAW_MQandDP=2812,4;VarDP=4 GT:AD:DP:GQ:PL:SB 1/1:0,4,0:4:12:125,12,0,125,12,125:0,0,0,4 +chrX 3830390 . G . . END=3830651 GT:DP:GQ:MIN_DP:PL 0/0:2:0:2:0,0,14 +chrX 3830652 . C . . END=3830665 GT:DP:GQ:MIN_DP:PL 0/0:9:21:7:0,21,233 +chrX 3830666 . C . . END=3830666 GT:DP:GQ:MIN_DP:PL 0/0:12:7:12:0,7,319 +chrX 3830667 . A . . END=3830767 GT:DP:GQ:MIN_DP:PL 0/0:14:28:13:0,28,407 +chrX 3830768 . G . . END=3830768 GT:DP:GQ:MIN_DP:PL 0/0:14:3:14:0,3,368 +chrX 3830769 . G . . END=3830769 GT:DP:GQ:MIN_DP:PL 0/0:14:39:14:0,39,585 +chrX 3830770 . A . . END=3830770 GT:DP:GQ:MIN_DP:PL 0/0:14:17:14:0,17,427 +chrX 3830771 . C . . END=3830782 GT:DP:GQ:MIN_DP:PL 0/0:13:27:13:0,27,405 +chrX 3830783 . A . . END=3830783 GT:DP:GQ:MIN_DP:PL 0/0:13:14:13:0,14,392 +chrX 3830784 . A . . END=3830795 GT:DP:GQ:MIN_DP:PL 0/0:10:21:10:0,21,315 +chrX 3830796 . G . . END=3830850 GT:DP:GQ:MIN_DP:PL 0/0:5:0:5:0,0,90 +chrX 3830851 . T . . END=3830864 GT:DP:GQ:MIN_DP:PL 0/0:9:21:7:0,21,193 +chrX 3830865 . G . . END=3830865 GT:DP:GQ:MIN_DP:PL 0/0:10:5:10:0,5,288 +chrX 3830866 . C . . END=3831317 GT:DP:GQ:MIN_DP:PL 0/0:15:20:12:0,20,352 +chrX 3831318 . A T, 267.64 . AS_QUALapprox=|275|0;AS_VarDP=27|12|0;BaseQRankSum=1.106;DP=39;MQRankSum=-2.094;QUALapprox=275;RAW_GT_COUNT=0,1,0;RAW_MQandDP=79749,39;ReadPosRankSum=-0.289;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:27,12,0:39:99:275,0,717,356,752,1109:13,14,6,6 +chrX 3831319 . C . . END=3831413 GT:DP:GQ:MIN_DP:PL 0/0:22:33:15:0,33,495 +chrX 3831414 . G . . END=3831414 GT:DP:GQ:MIN_DP:PL 0/0:13:14:13:0,14,321 +chrX 3831415 . G . . END=3831601 GT:DP:GQ:MIN_DP:PL 0/0:18:21:10:0,21,313 +chrX 3831602 . A . . END=3831682 GT:DP:GQ:MIN_DP:PL 0/0:5:0:5:0,0,84 +chrX 3831683 . T . . END=3831698 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,223 +chrX 3831699 . A . . END=3831726 GT:DP:GQ:MIN_DP:PL 0/0:6:10:6:0,10,153 +chrX 3831727 . C . . END=3831739 GT:DP:GQ:MIN_DP:PL 0/0:9:21:8:0,21,213 +chrX 3831740 . A . . END=3831740 GT:DP:GQ:MIN_DP:PL 0/0:10:5:10:0,5,258 +chrX 3831741 . G . . END=3831748 GT:DP:GQ:MIN_DP:PL 0/0:10:24:9:0,24,278 +chrX 3831749 . T . . END=3831749 GT:DP:GQ:MIN_DP:PL 0/0:10:16:10:0,16,299 +chrX 3831750 . T . . END=3832493 GT:DP:GQ:MIN_DP:PL 0/0:14:20:10:0,20,303 +chrX 3832494 . T C, 444.64 . AS_QUALapprox=|452|0;AS_VarDP=22|19|0;BaseQRankSum=-1.921;DP=43;MQRankSum=-0.767;QUALapprox=452;RAW_GT_COUNT=0,1,0;RAW_MQandDP=66882,43;ReadPosRankSum=-0.393;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:22,19,0:41:99:452,0,592,518,649,1167:10,12,9,10 +chrX 3832495 . T . . END=3832837 GT:DP:GQ:MIN_DP:PL 0/0:12:21:9:0,21,293 +chrX 3832838 . C . . END=3836753 GT:DP:GQ:MIN_DP:PL 0/0:0:0:0:0,0,0 +chrX 3836754 . TTTTG T, 210.92 . AS_QUALapprox=|225|0;AS_VarDP=0|5|0;DP=5;QUALapprox=225;RAW_GT_COUNT=0,0,1;RAW_MQandDP=3125,5;VarDP=5 GT:AD:DP:GQ:PL:SB 1/1:0,5,0:5:15:225,15,0,225,15,225:0,0,5,0 +chrX 3836759 . T . . END=3836861 GT:DP:GQ:MIN_DP:PL 0/0:5:9:5:0,9,98 +chrX 3836862 . T . . END=3836925 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,233 +chrX 3836926 . T . . END=3836928 GT:DP:GQ:MIN_DP:PL 0/0:7:15:7:0,15,225 +chrX 3836929 . C . . END=3836929 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,315 +chrX 3836930 . T . . END=3836948 GT:DP:GQ:MIN_DP:PL 0/0:10:9:10:0,9,135 +chrX 3836949 . T . . END=3836949 GT:DP:GQ:MIN_DP:PL 0/0:12:21:12:0,21,315 +chrX 3836950 . A . . END=3836950 GT:DP:GQ:MIN_DP:PL 0/0:9:0:9:0,0,194 +chrX 3836951 . A . . END=3836959 GT:DP:GQ:MIN_DP:PL 0/0:10:24:9:0,24,282 +chrX 3836960 . G . . END=3836960 GT:DP:GQ:MIN_DP:PL 0/0:11:8:11:0,8,292 +chrX 3836961 . G . . END=3837418 GT:DP:GQ:MIN_DP:PL 0/0:13:20:10:0,20,278 +chrX 3837419 . G . . END=3837420 GT:DP:GQ:MIN_DP:PL 0/0:11:19:11:0,19,333 +chrX 3837421 . C . . END=3837433 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,278 +chrX 3837434 . C . . END=3837434 GT:DP:GQ:MIN_DP:PL 0/0:9:2:9:0,2,253 +chrX 3837435 . T . . END=3837438 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,315 +chrX 3837439 . A . . END=3837693 GT:DP:GQ:MIN_DP:PL 0/0:4:0:4:0,0,45 +chrX 3837694 . C . . END=3837695 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,243 +chrX 3837696 . A . . END=3837699 GT:DP:GQ:MIN_DP:PL 0/0:7:18:7:0,18,270 +chrX 3837700 . G . . END=3838529 GT:DP:GQ:MIN_DP:PL 0/0:18:21:8:0,21,223 +chrX 3838530 . C A, 505.64 . AS_QUALapprox=|513|0;AS_VarDP=35|22|0;BaseQRankSum=0.709;DP=57;MQRankSum=2.720;QUALapprox=513;RAW_GT_COUNT=0,1,0;RAW_MQandDP=61179,57;ReadPosRankSum=-0.402;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:35,22,0:57:99:513,0,849,618,915,1533:16,19,5,17 +chrX 3838531 . G . . END=3838762 GT:DP:GQ:MIN_DP:PL 0/0:23:21:11:0,21,315 +chrX 3838763 . G . . END=3838812 GT:DP:GQ:MIN_DP:PL 0/0:3:0:3:0,0,0 +chrX 3838813 . T C, 48.31 . AS_QUALapprox=|60|0;AS_VarDP=0|2|0;DP=3;QUALapprox=60;RAW_GT_COUNT=0,0,1;RAW_MQandDP=1875,3;VarDP=2 GT:AD:DP:GQ:PL:SB 1/1:0,2,0:2:6:60,6,0,60,6,60:0,0,2,0 +chrX 3838814 . G . . END=3838817 GT:DP:GQ:MIN_DP:PL 0/0:4:9:4:0,9,94 +chrX 3838818 . C . . END=3839251 GT:DP:GQ:MIN_DP:PL 0/0:13:21:8:0,21,233 +chrX 3839252 . A . . END=3839252 GT:DP:GQ:MIN_DP:PL 0/0:12:11:12:0,11,327 +chrX 3839253 . C . . END=3839257 GT:DP:GQ:MIN_DP:PL 0/0:11:24:11:0,24,360 +chrX 3839258 . G . . END=3839258 GT:DP:GQ:MIN_DP:PL 0/0:12:11:12:0,11,327 +chrX 3839259 . G . . END=3839262 GT:DP:GQ:MIN_DP:PL 0/0:10:24:10:0,24,278 +chrX 3839263 . A . . END=3839263 GT:DP:GQ:MIN_DP:PL 0/0:10:15:10:0,15,278 +chrX 3839264 . A . . END=3839265 GT:DP:GQ:MIN_DP:PL 0/0:10:27:10:0,27,282 +chrX 3839266 . G . . END=3839266 GT:DP:GQ:MIN_DP:PL 0/0:9:13:9:0,13,254 +chrX 3839267 . A . . END=3839267 GT:DP:GQ:MIN_DP:PL 0/0:9:24:9:0,24,360 +chrX 3839268 . A . . END=3839268 GT:DP:GQ:MIN_DP:PL 0/0:9:2:9:0,2,243 +chrX 3839269 . C . . END=3839272 GT:DP:GQ:MIN_DP:PL 0/0:8:24:8:0,24,258 +chrX 3839273 . C . . END=3839274 GT:DP:GQ:MIN_DP:PL 0/0:9:2:9:0,2,233 +chrX 3839275 . A . . END=3839277 GT:DP:GQ:MIN_DP:PL 0/0:9:24:9:0,24,248 +chrX 3839278 . T . . END=3839278 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,209 +chrX 3839279 . C . . END=3839279 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,233 +chrX 3839280 . C . . END=3839281 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,209 +chrX 3839282 . T . . END=3839292 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,243 +chrX 3839293 . A . . END=3839293 GT:DP:GQ:MIN_DP:PL 0/0:8:10:8:0,10,219 +chrX 3839294 . A . . END=3839308 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,223 +chrX 3839309 . G . . END=3839309 GT:DP:GQ:MIN_DP:PL 0/0:7:7:7:0,7,194 +chrX 3839310 . G . . END=3839331 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,233 +chrX 3839332 . T . . END=3842655 GT:DP:GQ:MIN_DP:PL 0/0:0:0:0:0,0,0 +chrX 3842656 . G . . END=3842679 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,233 +chrX 3842680 . T . . END=3842680 GT:DP:GQ:MIN_DP:PL 0/0:9:13:9:0,13,264 +chrX 3842681 . T . . END=3843113 GT:DP:GQ:MIN_DP:PL 0/0:16:20:9:0,20,292 +chrX 3843114 . C T, 249.64 . AS_QUALapprox=|257|0;AS_VarDP=14|11|0;BaseQRankSum=-2.369;DP=28;MQRankSum=-0.593;QUALapprox=257;RAW_GT_COUNT=0,1,0;RAW_MQandDP=51116,28;ReadPosRankSum=0.329;VarDP=25 GT:AD:DP:GQ:PL:SB 0/1:14,11,0:25:99:257,0,400,299,433,732:5,9,4,7 +chrX 3843115 . C . . END=3843651 GT:DP:GQ:MIN_DP:PL 0/0:21:24:17:0,24,561 +chrX 3843652 . G . . END=3843652 GT:DP:GQ:MIN_DP:PL 0/0:17:16:17:0,16,522 +chrX 3843653 . C . . END=3843685 GT:DP:GQ:MIN_DP:PL 0/0:13:21:12:0,21,315 +chrX 3843686 . G . . END=3843687 GT:DP:GQ:MIN_DP:PL 0/0:10:18:10:0,18,270 +chrX 3843688 . G . . END=3843693 GT:DP:GQ:MIN_DP:PL 0/0:11:21:11:0,21,315 +chrX 3843694 . C . . END=3843722 GT:DP:GQ:MIN_DP:PL 0/0:5:9:5:0,9,135 +chrX 3843723 . G A, 148.96 . AS_QUALapprox=|163|0;AS_VarDP=0|5|0;DP=6;QUALapprox=163;RAW_GT_COUNT=0,0,1;RAW_MQandDP=7650,6;VarDP=5 GT:AD:DP:GQ:PL:SB 1/1:0,5,0:5:15:163,15,0,163,15,163:0,0,2,3 +chrX 3843724 . C . . END=3843808 GT:DP:GQ:MIN_DP:PL 0/0:5:7:5:0,7,94 +chrX 3843809 . A . . END=3843810 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,203 +chrX 3843811 . G . . END=3843811 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,209 +chrX 3843812 . C . . END=3843812 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,223 +chrX 3843813 . G . . END=3843813 GT:DP:GQ:MIN_DP:PL 0/0:4:12:4:0,12,119 +chrX 3843814 . G . . END=3843814 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,223 +chrX 3843815 . G A, 134.96 . AS_QUALapprox=|149|0;AS_VarDP=0|5|0;DP=5;QUALapprox=149;RAW_GT_COUNT=0,0,1;RAW_MQandDP=4100,5;VarDP=5 GT:AD:DP:GQ:PL:SB 1/1:0,5,0:5:15:149,15,0,149,15,149:0,0,4,1 +chrX 3843816 . G . . END=3843820 GT:DP:GQ:MIN_DP:PL 0/0:6:15:6:0,15,168 +chrX 3843821 . C . . END=3843874 GT:DP:GQ:MIN_DP:PL 0/0:10:21:9:0,21,293 +chrX 3843875 . C . . END=3843875 GT:DP:GQ:MIN_DP:PL 0/0:14:7:14:0,7,407 +chrX 3843876 . G . . END=3844252 GT:DP:GQ:MIN_DP:PL 0/0:18:21:10:0,21,315 +chrX 3844253 . A . . END=3844279 GT:DP:GQ:MIN_DP:PL 0/0:6:15:6:0,15,174 +chrX 3844280 . C . . END=3844280 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,243 +chrX 3844281 . A . . END=3844324 GT:DP:GQ:MIN_DP:PL 0/0:6:4:6:0,4,143 +chrX 3844325 . C . . END=3844335 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,213 +chrX 3844336 . G . . END=3848004 GT:DP:GQ:MIN_DP:PL 0/0:0:0:0:0,0,0 +chrX 3848005 . T . . END=3848020 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,233 +chrX 3848021 . T . . END=3848021 GT:DP:GQ:MIN_DP:PL 0/0:9:2:9:0,2,253 +chrX 3848022 . T . . END=3848031 GT:DP:GQ:MIN_DP:PL 0/0:10:27:9:0,27,283 +chrX 3848032 . A . . END=3848032 GT:DP:GQ:MIN_DP:PL 0/0:12:11:12:0,11,348 +chrX 3848033 . T . . END=3848045 GT:DP:GQ:MIN_DP:PL 0/0:12:33:12:0,33,372 +chrX 3848046 . G . . END=3848046 GT:DP:GQ:MIN_DP:PL 0/0:13:14:13:0,14,392 +chrX 3848047 . G . . END=3848530 GT:DP:GQ:MIN_DP:PL 0/0:16:21:8:0,21,233 +chrX 3848531 . T . . END=3848531 GT:DP:GQ:MIN_DP:PL 0/0:10:16:10:0,16,289 +chrX 3848532 . G . . END=3848537 GT:DP:GQ:MIN_DP:PL 0/0:10:24:10:0,24,317 +chrX 3848538 . A . . END=3848538 GT:DP:GQ:MIN_DP:PL 0/0:10:0:10:0,0,278 +chrX 3848539 . T . . END=3848553 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,268 +chrX 3848554 . T . . END=3848555 GT:DP:GQ:MIN_DP:PL 0/0:8:18:8:0,18,270 +chrX 3848556 . A . . END=3848563 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,315 +chrX 3848564 . C . . END=3848565 GT:DP:GQ:MIN_DP:PL 0/0:8:9:8:0,9,199 +chrX 3848566 . A . . END=3848566 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,315 +chrX 3848567 . G . . END=3848567 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,219 +chrX 3848568 . G . . END=3848572 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,213 +chrX 3848573 . T . . END=3848573 GT:DP:GQ:MIN_DP:PL 0/0:7:0:7:0,0,174 +chrX 3848574 . A . . END=3848577 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,223 +chrX 3848578 . C . . END=3848578 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,199 +chrX 3848579 . T . . END=3848582 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,223 +chrX 3848583 . A . . END=3848612 GT:DP:GQ:MIN_DP:PL 0/0:6:0:6:0,0,184 +chrX 3848613 . T . . END=3848620 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,223 +chrX 3848621 . C . . END=3848621 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,209 +chrX 3848622 . A . . END=3848631 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,202 +chrX 3848632 . T . . END=3848771 GT:DP:GQ:MIN_DP:PL 0/0:5:0:5:0,0,70 +chrX 3848772 . C G, 48.31 . AS_QUALapprox=|60|0;AS_VarDP=0|2|0;DP=2;QUALapprox=60;RAW_GT_COUNT=0,0,1;RAW_MQandDP=1250,2;VarDP=2 GT:AD:DP:GQ:PL:SB 1/1:0,2,0:2:6:60,6,0,60,6,60:0,0,0,2 +chrX 3848773 . C . . END=3852654 GT:DP:GQ:MIN_DP:PL 0/0:0:0:0:0,0,0 +chrX 3852655 . G . . END=3852663 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,243 +chrX 3852664 . G . . END=3852664 GT:DP:GQ:MIN_DP:PL 0/0:9:2:9:0,2,253 +chrX 3852665 . A . . END=3852665 GT:DP:GQ:MIN_DP:PL 0/0:9:27:9:0,27,303 +chrX 3852666 . G . . END=3852666 GT:DP:GQ:MIN_DP:PL 0/0:10:5:10:0,5,278 +chrX 3852667 . A . . END=3852671 GT:DP:GQ:MIN_DP:PL 0/0:10:27:9:0,27,303 +chrX 3852672 . C . . END=3852672 GT:DP:GQ:MIN_DP:PL 0/0:11:19:11:0,19,333 +chrX 3852673 . T . . END=3853312 GT:DP:GQ:MIN_DP:PL 0/0:16:22:11:0,22,362 +chrX 3853313 . G A, 261.64 . AS_QUALapprox=|269|0;AS_VarDP=27|11|0;BaseQRankSum=2.177;DP=38;MQRankSum=1.724;QUALapprox=269;RAW_GT_COUNT=0,1,0;RAW_MQandDP=46933,38;ReadPosRankSum=-2.094;VarDP=38 GT:AD:DP:GQ:PL:SB 0/1:27,11,0:38:99:269,0,639,349,672,1022:16,11,0,11 +chrX 3853314 . G . . END=3853519 GT:DP:GQ:MIN_DP:PL 0/0:11:21:9:0,21,292 +chrX 3853520 . G . . END=3853521 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,160 +chrX 3853522 . A . . END=3853529 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,258 +chrX 3853530 . T . . END=3853530 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,219 +chrX 3853531 . G . . END=3853532 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,315 +chrX 3853533 . G . . END=3853533 GT:DP:GQ:MIN_DP:PL 0/0:8:10:8:0,10,219 +chrX 3853534 . A . . END=3853540 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,223 +chrX 3853541 . C . . END=3853541 GT:DP:GQ:MIN_DP:PL 0/0:7:7:7:0,7,194 +chrX 3853542 . A . . END=3853542 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,243 +chrX 3853543 . C . . END=3853543 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,209 +chrX 3853544 . T . . END=3853548 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,223 +chrX 3853549 . A . . END=3853550 GT:DP:GQ:MIN_DP:PL 0/0:7:6:7:0,6,164 +chrX 3853551 . T . . END=3853552 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,223 +chrX 3853553 . C . . END=3853553 GT:DP:GQ:MIN_DP:PL 0/0:6:0:6:0,0,129 +chrX 3853554 . C . . END=3853554 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,223 +chrX 3853555 . C . . END=3853558 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,199 +chrX 3853559 . T . . END=3853561 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,243 +chrX 3853562 . C . . END=3853562 GT:DP:GQ:MIN_DP:PL 0/0:7:7:7:0,7,194 +chrX 3853563 . C . . END=3853566 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,223 +chrX 3853567 . A . . END=3853567 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,209 +chrX 3853568 . A . . END=3853575 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,223 +chrX 3853576 . G . . END=3853576 GT:DP:GQ:MIN_DP:PL 0/0:7:7:7:0,7,194 +chrX 3853577 . A . . END=3853580 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,213 +chrX 3853581 . G . . END=3853581 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,199 +chrX 3853582 . T . . END=3853582 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,233 +chrX 3853583 . G . . END=3853583 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,199 +chrX 3853584 . T . . END=3853584 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,233 +chrX 3853585 . C . . END=3853585 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,188 +chrX 3853586 . C . . END=3853586 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,223 +chrX 3853587 . T . . END=3856861 GT:DP:GQ:MIN_DP:PL 0/0:0:0:0:0,0,0 +chrX 3856862 . G . . END=3856883 GT:DP:GQ:MIN_DP:PL 0/0:9:21:8:0,21,243 +chrX 3856884 . A . . END=3856885 GT:DP:GQ:MIN_DP:PL 0/0:10:16:10:0,16,289 +chrX 3856886 . T . . END=3856897 GT:DP:GQ:MIN_DP:PL 0/0:10:27:9:0,27,313 +chrX 3856898 . T . . END=3856898 GT:DP:GQ:MIN_DP:PL 0/0:11:19:11:0,19,333 +chrX 3856899 . A . . END=3856918 GT:DP:GQ:MIN_DP:PL 0/0:10:27:9:0,27,313 +chrX 3856919 . A . . END=3856919 GT:DP:GQ:MIN_DP:PL 0/0:10:15:10:0,15,278 +chrX 3856920 . G . . END=3856990 GT:DP:GQ:MIN_DP:PL 0/0:14:27:9:0,27,313 +chrX 3856991 . T . . END=3856991 GT:DP:GQ:MIN_DP:PL 0/0:12:1:12:0,1,328 +chrX 3856992 . A . . END=3857339 GT:DP:GQ:MIN_DP:PL 0/0:17:22:8:0,22,217 +chrX 3857340 . G . . END=3857340 GT:DP:GQ:MIN_DP:PL 0/0:14:17:14:0,17,417 +chrX 3857341 . G . . END=3857437 GT:DP:GQ:MIN_DP:PL 0/0:14:28:14:0,28,428 +chrX 3857438 . G . . END=3857438 GT:DP:GQ:MIN_DP:PL 0/0:11:8:11:0,8,323 +chrX 3857439 . G . . END=3857483 GT:DP:GQ:MIN_DP:PL 0/0:10:24:10:0,24,272 +chrX 3857484 . C . . END=3857484 GT:DP:GQ:MIN_DP:PL 0/0:10:16:10:0,16,289 +chrX 3857485 . A . . END=3857490 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,315 +chrX 3857491 . C . . END=3857506 GT:DP:GQ:MIN_DP:PL 0/0:7:18:7:0,18,209 +chrX 3857507 . A . . END=3857549 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,192 +chrX 3857550 . G . . END=3859485 GT:DP:GQ:MIN_DP:PL 0/0:0:0:0:0,0,0 +chrX 3859486 . T . . END=3859539 GT:DP:GQ:MIN_DP:PL 0/0:13:24:8:0,24,258 +chrX 3859540 . T . . END=3859540 GT:DP:GQ:MIN_DP:PL 0/0:15:6:15:0,6,373 +chrX 3859541 . G . . END=3859552 GT:DP:GQ:MIN_DP:PL 0/0:16:23:14:0,23,432 +chrX 3859553 . C . . END=3859553 GT:DP:GQ:MIN_DP:PL 0/0:15:10:15:0,10,391 +chrX 3859554 . T . . END=3860051 GT:DP:GQ:MIN_DP:PL 0/0:17:21:12:0,21,315 +chrX 3860052 . T . . END=3860052 GT:DP:GQ:MIN_DP:PL 0/0:10:16:10:0,16,299 +chrX 3860053 . C . . END=3860057 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,223 +chrX 3860058 . C . . END=3866449 GT:DP:GQ:MIN_DP:PL 0/0:0:0:0:0,0,0 +chrX 3866450 . C . . END=3866453 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,213 +chrX 3866454 . C . . END=3866458 GT:DP:GQ:MIN_DP:PL 0/0:7:7:7:0,7,194 +chrX 3866459 . T . . END=3866467 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,213 +chrX 3866468 . G . . END=3866468 GT:DP:GQ:MIN_DP:PL 0/0:7:7:7:0,7,194 +chrX 3866469 . A . . END=3866471 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,233 +chrX 3866472 . C . . END=3866473 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,189 +chrX 3866474 . C . . END=3866479 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,223 +chrX 3866480 . C . . END=3866489 GT:DP:GQ:MIN_DP:PL 0/0:7:18:7:0,18,188 +chrX 3866490 . T . . END=3866496 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,238 +chrX 3866497 . A . . END=3866497 GT:DP:GQ:MIN_DP:PL 0/0:8:10:8:0,10,229 +chrX 3866498 . A . . END=3866498 GT:DP:GQ:MIN_DP:PL 0/0:8:24:8:0,24,268 +chrX 3866499 . T . . END=3866499 GT:DP:GQ:MIN_DP:PL 0/0:8:10:8:0,10,229 +chrX 3866500 . T . . END=3866511 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,213 +chrX 3866512 . T . . END=3866515 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,199 +chrX 3866516 . G . . END=3866537 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,203 +chrX 3866538 . T . . END=3866538 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,178 +chrX 3866539 . C . . END=3866751 GT:DP:GQ:MIN_DP:PL 0/0:16:20:9:0,20,233 +chrX 3866752 . G . . END=3866752 GT:DP:GQ:MIN_DP:PL 0/0:16:13:16:0,13,437 +chrX 3866753 . A . . END=3866772 GT:DP:GQ:MIN_DP:PL 0/0:15:20:15:0,20,422 +chrX 3866773 . G . . END=3866773 GT:DP:GQ:MIN_DP:PL 0/0:17:16:17:0,16,461 +chrX 3866774 . C . . END=3867117 GT:DP:GQ:MIN_DP:PL 0/0:18:23:13:0,23,442 +chrX 3867118 . A . . END=3867118 GT:DP:GQ:MIN_DP:PL 0/0:17:16:17:0,16,501 +chrX 3867119 . T . . END=3867159 GT:DP:GQ:MIN_DP:PL 0/0:15:23:13:0,23,417 +chrX 3867160 . A . . END=3867160 GT:DP:GQ:MIN_DP:PL 0/0:12:11:12:0,11,358 +chrX 3867161 . G . . END=3867204 GT:DP:GQ:MIN_DP:PL 0/0:13:27:12:0,27,405 +chrX 3867205 . G . . END=3867205 GT:DP:GQ:MIN_DP:PL 0/0:11:19:11:0,19,333 +chrX 3867206 . T . . END=3867235 GT:DP:GQ:MIN_DP:PL 0/0:14:28:13:0,28,362 +chrX 3867236 . T . . END=3867236 GT:DP:GQ:MIN_DP:PL 0/0:14:17:14:0,17,397 +chrX 3867237 . C . . END=3867821 GT:DP:GQ:MIN_DP:PL 0/0:17:26:13:0,26,318 +chrX 3867822 . A . . END=3867822 GT:DP:GQ:MIN_DP:PL 0/0:10:16:10:0,16,279 +chrX 3867823 . A . . END=3867891 GT:DP:GQ:MIN_DP:PL 0/0:9:21:8:0,21,223 +chrX 3867892 . A . . END=3867892 GT:DP:GQ:MIN_DP:PL 0/0:7:18:7:0,18,270 +chrX 3867893 . T . . END=3867909 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,243 +chrX 3867910 . C . . END=3867910 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,209 +chrX 3867911 . T . . END=3867911 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,243 +chrX 3867912 . T . . END=3868820 GT:DP:GQ:MIN_DP:PL 0/0:1:0:1:0,0,0 +chrX 3868821 . A . . END=3868853 GT:DP:GQ:MIN_DP:PL 0/0:10:21:7:0,21,213 +chrX 3868854 . T . . END=3868854 GT:DP:GQ:MIN_DP:PL 0/0:12:11:12:0,11,348 +chrX 3868855 . A . . END=3868858 GT:DP:GQ:MIN_DP:PL 0/0:12:36:12:0,36,356 +chrX 3868859 . C . . END=3868859 GT:DP:GQ:MIN_DP:PL 0/0:14:7:14:0,7,366 +chrX 3868860 . T . . END=3869334 GT:DP:GQ:MIN_DP:PL 0/0:16:21:10:0,21,315 +chrX 3869335 . T . . END=3871970 GT:DP:GQ:MIN_DP:PL 0/0:0:0:0:0,0,0 +chrX 3871971 . T . . END=3872132 GT:DP:GQ:MIN_DP:PL 0/0:17:21:9:0,21,243 +chrX 3872133 . C A, 19.64 . AS_QUALapprox=|27|0;AS_VarDP=16|3|0;BaseQRankSum=-0.795;DP=19;MQRankSum=-1.011;QUALapprox=27;RAW_GT_COUNT=0,1,0;RAW_MQandDP=18031,19;ReadPosRankSum=1.343;VarDP=19 GT:AD:DP:GQ:PL:SB 0/1:16,3,0:19:27:27,0,429,75,438,513:14,2,3,0 +chrX 3872134 . A . . END=3872162 GT:DP:GQ:MIN_DP:PL 0/0:22:43:22:0,43,611 +chrX 3872163 . G . . END=3872163 GT:DP:GQ:MIN_DP:PL 0/0:25:13:25:0,13,575 +chrX 3872164 . C . . END=3872185 GT:DP:GQ:MIN_DP:PL 0/0:26:69:26:0,69,783 +chrX 3872186 . C . . END=3872188 GT:DP:GQ:MIN_DP:PL 0/0:28:15:28:0,15,754 +chrX 3872189 . C . . END=3872368 GT:DP:GQ:MIN_DP:PL 0/0:29:46:29:0,46,809 +chrX 3872369 . TGTTA T, 304.60 . AS_QUALapprox=|312|0;AS_VarDP=22|9|0;BaseQRankSum=-0.222;DP=31;MQRankSum=0.082;QUALapprox=312;RAW_GT_COUNT=0,1,0;RAW_MQandDP=30113,31;ReadPosRankSum=-0.131;VarDP=31 GT:AD:DP:GQ:PL:SB 0/1:22,9,0:31:99:312,0,897,378,924,1302:13,9,4,5 +chrX 3872374 . G . . END=3872913 GT:DP:GQ:MIN_DP:PL 0/0:16:21:13:0,21,315 +chrX 3872914 . A . . END=3872914 GT:DP:GQ:MIN_DP:PL 0/0:11:19:11:0,19,333 +chrX 3872915 . A . . END=3872925 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,233 +chrX 3872926 . A . . END=3874882 GT:DP:GQ:MIN_DP:PL 0/0:0:0:0:0,0,0 +chrX 3874883 . T . . END=3874885 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,233 +chrX 3874886 . A . . END=3874887 GT:DP:GQ:MIN_DP:PL 0/0:7:7:7:0,7,184 +chrX 3874888 . T . . END=3874890 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,223 +chrX 3874891 . C . . END=3874891 GT:DP:GQ:MIN_DP:PL 0/0:7:7:7:0,7,194 +chrX 3874892 . C . . END=3874895 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,243 +chrX 3874896 . A . . END=3874896 GT:DP:GQ:MIN_DP:PL 0/0:8:9:8:0,9,209 +chrX 3874897 . A . . END=3874923 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,213 +chrX 3874924 . G . . END=3874924 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,199 +chrX 3874925 . T . . END=3874925 GT:DP:GQ:MIN_DP:PL 0/0:8:24:8:0,24,258 +chrX 3874926 . C . . END=3874926 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,189 +chrX 3874927 . G . . END=3874942 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,233 +chrX 3874943 . G . . END=3874943 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,209 +chrX 3874944 . G . . END=3874951 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,213 +chrX 3874952 . C . . END=3875153 GT:DP:GQ:MIN_DP:PL 0/0:4:0:4:0,0,0 +chrX 3875154 . A G, 114.96 . AS_QUALapprox=|129|0;AS_VarDP=0|5|0;DP=5;QUALapprox=129;RAW_GT_COUNT=0,0,1;RAW_MQandDP=3125,5;VarDP=5 GT:AD:DP:GQ:PL:SB 1/1:0,5,0:5:15:129,15,0,129,15,129:0,0,5,0 +chrX 3875155 . T . . END=3875241 GT:DP:GQ:MIN_DP:PL 0/0:6:0:6:0,0,104 +chrX 3875242 . T . . END=3875247 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,223 +chrX 3875248 . C . . END=3875267 GT:DP:GQ:MIN_DP:PL 0/0:7:18:7:0,18,189 +chrX 3875268 . G . . END=3875279 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,223 +chrX 3875280 . T . . END=3875327 GT:DP:GQ:MIN_DP:PL 0/0:6:15:6:0,15,153 +chrX 3875328 . C . . END=3875329 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,315 +chrX 3875330 . A . . END=3875332 GT:DP:GQ:MIN_DP:PL 0/0:8:18:8:0,18,209 +chrX 3875333 . C . . END=3875340 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,238 +chrX 3875341 . A . . END=3875341 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,178 +chrX 3875342 . T . . END=3875348 GT:DP:GQ:MIN_DP:PL 0/0:10:24:9:0,24,242 +chrX 3875349 . T . . END=3875349 GT:DP:GQ:MIN_DP:PL 0/0:11:19:11:0,19,313 +chrX 3875350 . T . . END=3875508 GT:DP:GQ:MIN_DP:PL 0/0:17:21:10:0,21,315 +chrX 3875509 . G . . END=3875510 GT:DP:GQ:MIN_DP:PL 0/0:8:10:8:0,10,199 +chrX 3875511 . T . . END=3875515 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,315 +chrX 3875516 . C . . END=3878132 GT:DP:GQ:MIN_DP:PL 0/0:0:0:0:0,0,0 +chrX 3878133 . G . . END=3878158 GT:DP:GQ:MIN_DP:PL 0/0:9:21:8:0,21,233 +chrX 3878159 . T . . END=3878159 GT:DP:GQ:MIN_DP:PL 0/0:12:11:12:0,11,348 +chrX 3878160 . C . . END=3878405 GT:DP:GQ:MIN_DP:PL 0/0:19:39:13:0,39,452 +chrX 3878406 . C . . END=3878406 GT:DP:GQ:MIN_DP:PL 0/0:17:16:17:0,16,501 +chrX 3878407 . C . . END=3878574 GT:DP:GQ:MIN_DP:PL 0/0:14:21:11:0,21,315 +chrX 3878575 . T C, 254.05 . AS_QUALapprox=|268|0;AS_VarDP=0|9|0;DP=9;QUALapprox=268;RAW_GT_COUNT=0,0,1;RAW_MQandDP=5625,9;VarDP=9 GT:AD:DP:GQ:PL:SB 1/1:0,9,0:9:27:268,27,0,268,27,268:0,0,0,9 +chrX 3878576 . A . . END=3878609 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,243 +chrX 3878610 . T . . END=3878610 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,219 +chrX 3878611 . C . . END=3878625 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,213 +chrX 3878626 . G . . END=3882238 GT:DP:GQ:MIN_DP:PL 0/0:0:0:0:0,0,0 +chrX 3882239 . G A, 49.64 . AS_QUALapprox=|57|0;AS_VarDP=2|2|0;BaseQRankSum=0.000;DP=4;MQRankSum=0.000;QUALapprox=57;RAW_GT_COUNT=0,1,0;RAW_MQandDP=6400,4;ReadPosRankSum=-1.383;VarDP=4 GT:AD:DP:GQ:PL:SB 0/1:2,2,0:4:57:57,0,57,64,64,127:2,0,2,0 +chrX 3882240 . G . . END=3882374 GT:DP:GQ:MIN_DP:PL 0/0:5:0:5:0,0,119 +chrX 3882375 . T . . END=3882376 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,233 +chrX 3882377 . G . . END=3882378 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,178 +chrX 3882379 . G . . END=3882379 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,193 +chrX 3882380 . G . . END=3882380 GT:DP:GQ:MIN_DP:PL 0/0:7:0:7:0,0,174 +chrX 3882381 . C . . END=3882381 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,233 +chrX 3882382 . G . . END=3882382 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,199 +chrX 3882383 . T . . END=3882383 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,192 +chrX 3882384 . C . . END=3882401 GT:DP:GQ:MIN_DP:PL 0/0:7:0:7:0,0,164 +chrX 3882402 . G . . END=3882402 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,315 +chrX 3882403 . C . . END=3882403 GT:DP:GQ:MIN_DP:PL 0/0:9:2:9:0,2,253 +chrX 3882404 . C . . END=3882447 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,207 +chrX 3882448 . C . . END=3882448 GT:DP:GQ:MIN_DP:PL 0/0:9:13:9:0,13,264 +chrX 3882449 . G . . END=3882540 GT:DP:GQ:MIN_DP:PL 0/0:14:24:9:0,24,258 +chrX 3882541 . G C, 66.64 . AS_QUALapprox=|74|0;AS_VarDP=11|4|0;BaseQRankSum=1.215;DP=15;MQRankSum=-2.337;QUALapprox=74;RAW_GT_COUNT=0,1,0;RAW_MQandDP=17175,15;ReadPosRankSum=-0.914;VarDP=15 GT:AD:DP:GQ:PL:SB 0/1:11,4,0:15:74:74,0,277,107,289,396:11,0,4,0 +chrX 3882542 . C . . END=3883023 GT:DP:GQ:MIN_DP:PL 0/0:15:27:11:0,27,348 +chrX 3883024 . A . . END=3883024 GT:DP:GQ:MIN_DP:PL 0/0:11:18:11:0,18,292 +chrX 3883025 . A . . END=3883030 GT:DP:GQ:MIN_DP:PL 0/0:11:21:11:0,21,315 +chrX 3883031 . T . . END=3883031 GT:DP:GQ:MIN_DP:PL 0/0:10:5:10:0,5,258 +chrX 3883032 . A . . END=3883051 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,223 +chrX 3883052 . T . . END=3883058 GT:DP:GQ:MIN_DP:PL 0/0:8:18:8:0,18,270 +chrX 3883059 . C . . END=3883084 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,223 +chrX 3883085 . G . . END=3884772 GT:DP:GQ:MIN_DP:PL 0/0:0:0:0:0,0,0 +chrX 3884773 . G . . END=3884781 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,233 +chrX 3884782 . G . . END=3884807 GT:DP:GQ:MIN_DP:PL 0/0:6:15:6:0,15,174 +chrX 3884808 . A . . END=3884865 GT:DP:GQ:MIN_DP:PL 0/0:9:21:8:0,21,243 +chrX 3884866 . A . . END=3884866 GT:DP:GQ:MIN_DP:PL 0/0:10:16:10:0,16,299 +chrX 3884867 . T . . END=3884869 GT:DP:GQ:MIN_DP:PL 0/0:10:30:10:0,30,307 +chrX 3884870 . T . . END=3884870 GT:DP:GQ:MIN_DP:PL 0/0:10:16:10:0,16,279 +chrX 3884871 . T . . END=3884894 GT:DP:GQ:MIN_DP:PL 0/0:11:27:11:0,27,362 +chrX 3884895 . G . . END=3884895 GT:DP:GQ:MIN_DP:PL 0/0:12:11:12:0,11,348 +chrX 3884896 . A . . END=3884899 GT:DP:GQ:MIN_DP:PL 0/0:13:36:13:0,36,376 +chrX 3884900 . A . . END=3884900 GT:DP:GQ:MIN_DP:PL 0/0:13:0:13:0,0,282 +chrX 3884901 . G . . END=3884905 GT:DP:GQ:MIN_DP:PL 0/0:12:33:12:0,33,367 +chrX 3884906 . G . . END=3884906 GT:DP:GQ:MIN_DP:PL 0/0:12:11:12:0,11,348 +chrX 3884907 . C . . END=3884914 GT:DP:GQ:MIN_DP:PL 0/0:12:33:12:0,33,352 +chrX 3884915 . G . . END=3884915 GT:DP:GQ:MIN_DP:PL 0/0:13:4:13:0,4,342 +chrX 3884916 . C . . END=3885178 GT:DP:GQ:MIN_DP:PL 0/0:16:21:14:0,21,315 +chrX 3885179 . G . . END=3885180 GT:DP:GQ:MIN_DP:PL 0/0:11:18:11:0,18,270 +chrX 3885181 . T . . END=3885198 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,258 +chrX 3885199 . A . . END=3885199 GT:DP:GQ:MIN_DP:PL 0/0:9:13:9:0,13,264 +chrX 3885200 . T . . END=3885216 GT:DP:GQ:MIN_DP:PL 0/0:10:27:9:0,27,292 +chrX 3885217 . C . . END=3885217 GT:DP:GQ:MIN_DP:PL 0/0:10:5:10:0,5,288 +chrX 3885218 . A . . END=3885227 GT:DP:GQ:MIN_DP:PL 0/0:11:30:11:0,30,328 +chrX 3885228 . C . . END=3885228 GT:DP:GQ:MIN_DP:PL 0/0:11:19:11:0,19,333 +chrX 3885229 . C . . END=3885229 GT:DP:GQ:MIN_DP:PL 0/0:10:30:10:0,30,348 +chrX 3885230 . C . . END=3885230 GT:DP:GQ:MIN_DP:PL 0/0:11:8:11:0,8,302 +chrX 3885231 . C . . END=3885263 GT:DP:GQ:MIN_DP:PL 0/0:14:33:12:0,33,352 +chrX 3885264 . G . . END=3885264 GT:DP:GQ:MIN_DP:PL 0/0:14:17:14:0,17,407 +chrX 3885265 . A . . END=3885278 GT:DP:GQ:MIN_DP:PL 0/0:13:36:13:0,36,407 +chrX 3885279 . G . . END=3885279 GT:DP:GQ:MIN_DP:PL 0/0:13:14:13:0,14,382 +chrX 3885280 . A . . END=3885292 GT:DP:GQ:MIN_DP:PL 0/0:12:22:12:0,22,368 +chrX 3885293 . A . . END=3885293 GT:DP:GQ:MIN_DP:PL 0/0:14:17:14:0,17,397 +chrX 3885294 . C . . END=3885294 GT:DP:GQ:MIN_DP:PL 0/0:12:36:12:0,36,407 +chrX 3885295 . C . . END=3885295 GT:DP:GQ:MIN_DP:PL 0/0:13:14:13:0,14,392 +chrX 3885296 . A . . END=3885319 GT:DP:GQ:MIN_DP:PL 0/0:13:25:13:0,25,393 +chrX 3885320 . A . . END=3885320 GT:DP:GQ:MIN_DP:PL 0/0:13:14:13:0,14,372 +chrX 3885321 . T . . END=3885356 GT:DP:GQ:MIN_DP:PL 0/0:12:22:10:0,22,292 +chrX 3885357 . G . . END=3885357 GT:DP:GQ:MIN_DP:PL 0/0:10:16:10:0,16,289 +chrX 3885358 . A . . END=3885366 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,258 +chrX 3885367 . T . . END=3886377 GT:DP:GQ:MIN_DP:PL 0/0:0:0:0:0,0,0 +chrX 3886378 . T . . END=3886383 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,223 +chrX 3886384 . T . . END=3886384 GT:DP:GQ:MIN_DP:PL 0/0:7:18:7:0,18,270 +chrX 3886385 . C . . END=3886406 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,292 +chrX 3886407 . G . . END=3886408 GT:DP:GQ:MIN_DP:PL 0/0:9:13:9:0,13,264 +chrX 3886409 . T . . END=3886487 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,243 +chrX 3886488 . C . . END=3886488 GT:DP:GQ:MIN_DP:PL 0/0:11:19:11:0,19,333 +chrX 3886489 . A . . END=3886513 GT:DP:GQ:MIN_DP:PL 0/0:13:33:13:0,33,362 +chrX 3886514 . C . . END=3886514 GT:DP:GQ:MIN_DP:PL 0/0:14:7:14:0,7,417 +chrX 3886515 . C . . END=3886887 GT:DP:GQ:MIN_DP:PL 0/0:18:20:9:0,20,313 +chrX 3886888 . C . . END=3886888 GT:DP:GQ:MIN_DP:PL 0/0:16:13:16:0,13,477 +chrX 3886889 . C . . END=3886932 GT:DP:GQ:MIN_DP:PL 0/0:17:29:16:0,29,456 +chrX 3886933 . C . . END=3886933 GT:DP:GQ:MIN_DP:PL 0/0:14:17:14:0,17,417 +chrX 3886934 . A . . END=3886967 GT:DP:GQ:MIN_DP:PL 0/0:14:30:13:0,30,417 +chrX 3886968 . T . . END=3886968 GT:DP:GQ:MIN_DP:PL 0/0:13:14:13:0,14,392 +chrX 3886969 . G . . END=3887016 GT:DP:GQ:MIN_DP:PL 0/0:10:24:8:0,24,268 +chrX 3887017 . G . . END=3887017 GT:DP:GQ:MIN_DP:PL 0/0:11:8:11:0,8,302 +chrX 3887018 . A . . END=3887041 GT:DP:GQ:MIN_DP:PL 0/0:10:21:10:0,21,307 +chrX 3887042 . A . . END=3887042 GT:DP:GQ:MIN_DP:PL 0/0:10:5:10:0,5,278 +chrX 3887043 . A . . END=3887049 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,315 +chrX 3887050 . A . . END=3887050 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,219 +chrX 3887051 . C . . END=3887051 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,243 +chrX 3887052 . A . . END=3892416 GT:DP:GQ:MIN_DP:PL 0/0:0:0:0:0,0,0 +chrX 3892417 . C . . END=3892438 GT:DP:GQ:MIN_DP:PL 0/0:9:21:8:0,21,233 +chrX 3892439 . A . . END=3892439 GT:DP:GQ:MIN_DP:PL 0/0:11:19:11:0,19,333 +chrX 3892440 . C . . END=3892449 GT:DP:GQ:MIN_DP:PL 0/0:11:30:11:0,30,348 +chrX 3892450 . A . . END=3892450 GT:DP:GQ:MIN_DP:PL 0/0:11:19:11:0,19,333 +chrX 3892451 . A . . END=3892465 GT:DP:GQ:MIN_DP:PL 0/0:14:36:13:0,36,397 +chrX 3892466 . C . . END=3892466 GT:DP:GQ:MIN_DP:PL 0/0:14:17:14:0,17,427 +chrX 3892467 . T . . END=3892472 GT:DP:GQ:MIN_DP:PL 0/0:14:42:14:0,42,456 +chrX 3892473 . T . . END=3892473 GT:DP:GQ:MIN_DP:PL 0/0:14:17:14:0,17,427 +chrX 3892474 . A . . END=3892481 GT:DP:GQ:MIN_DP:PL 0/0:14:39:13:0,39,446 +chrX 3892482 . A . . END=3892482 GT:DP:GQ:MIN_DP:PL 0/0:16:13:16:0,13,466 +chrX 3892483 . T . . END=3892582 GT:DP:GQ:MIN_DP:PL 0/0:16:23:14:0,23,477 +chrX 3892583 . T . . END=3892583 GT:DP:GQ:MIN_DP:PL 0/0:14:17:14:0,17,427 +chrX 3892584 . C . . END=3892868 GT:DP:GQ:MIN_DP:PL 0/0:15:25:13:0,25,393 +chrX 3892869 . A . . END=3892869 GT:DP:GQ:MIN_DP:PL 0/0:18:19:18:0,19,556 +chrX 3892870 . T . . END=3892932 GT:DP:GQ:MIN_DP:PL 0/0:18:29:17:0,29,477 +chrX 3892933 . G . . END=3892933 GT:DP:GQ:MIN_DP:PL 0/0:19:8:19:0,8,502 +chrX 3892934 . C . . END=3892968 GT:DP:GQ:MIN_DP:PL 0/0:16:26:14:0,26,408 +chrX 3892969 . T . . END=3892969 GT:DP:GQ:MIN_DP:PL 0/0:13:4:13:0,4,372 +chrX 3892970 . G . . END=3893030 GT:DP:GQ:MIN_DP:PL 0/0:10:21:9:0,21,233 +chrX 3893031 . T C, 28.64 . AS_QUALapprox=|36|0;AS_VarDP=6|2|0;BaseQRankSum=0.319;DP=8;MQRankSum=-0.619;QUALapprox=36;RAW_GT_COUNT=0,1,0;RAW_MQandDP=7982,8;ReadPosRankSum=0.464;VarDP=8 GT:AD:DP:GQ:PL:SB 0/1:6,2,0:8:36:36,0,145,54,151,204:2,4,0,2 +chrX 3893032 . A . . END=3893038 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,315 +chrX 3893039 . G . . END=3893040 GT:DP:GQ:MIN_DP:PL 0/0:6:0:6:0,0,149 +chrX 3893041 . T . . END=3893051 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,315 +chrX 3893052 . G . . END=3893052 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,209 +chrX 3893053 . T . . END=3893059 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,315 +chrX 3893060 . A . . END=3893070 GT:DP:GQ:MIN_DP:PL 0/0:8:15:8:0,15,225 +chrX 3893071 . A . . END=3893084 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,223 +chrX 3893085 . C . . END=3893086 GT:DP:GQ:MIN_DP:PL 0/0:7:7:7:0,7,184 +chrX 3893087 . C . . END=3893105 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,258 +chrX 3893106 . A . . END=3893106 GT:DP:GQ:MIN_DP:PL 0/0:9:13:9:0,13,264 +chrX 3893107 . A . . END=3893113 GT:DP:GQ:MIN_DP:PL 0/0:8:24:8:0,24,237 +chrX 3893114 . A . . END=3893114 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,149 +chrX 3893115 . C . . END=3893162 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,233 +chrX 3893163 . C . . END=3893173 GT:DP:GQ:MIN_DP:PL 0/0:8:18:8:0,18,270 +chrX 3893174 . A . . END=3893181 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,243 +chrX 3893182 . T . . END=3895510 GT:DP:GQ:MIN_DP:PL 0/0:0:0:0:0,0,0 +chrX 3895511 . G . . END=3895536 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,233 +chrX 3895537 . A . . END=3895537 GT:DP:GQ:MIN_DP:PL 0/0:9:13:9:0,13,264 +chrX 3895538 . A . . END=3895543 GT:DP:GQ:MIN_DP:PL 0/0:9:24:9:0,24,360 +chrX 3895544 . T . . END=3895544 GT:DP:GQ:MIN_DP:PL 0/0:9:13:9:0,13,264 +chrX 3895545 . A . . END=3895578 GT:DP:GQ:MIN_DP:PL 0/0:8:24:8:0,24,258 +chrX 3895579 . G . . END=3895579 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,219 +chrX 3895580 . G . . END=3895611 GT:DP:GQ:MIN_DP:PL 0/0:8:24:8:0,24,268 +chrX 3895612 . T . . END=3895612 GT:DP:GQ:MIN_DP:PL 0/0:10:5:10:0,5,268 +chrX 3895613 . T . . END=3895646 GT:DP:GQ:MIN_DP:PL 0/0:10:24:9:0,24,228 +chrX 3895647 . A . . END=3895647 GT:DP:GQ:MIN_DP:PL 0/0:9:18:9:0,18,270 +chrX 3895648 . T . . END=3895649 GT:DP:GQ:MIN_DP:PL 0/0:10:21:10:0,21,315 +chrX 3895650 . T . . END=3895697 GT:DP:GQ:MIN_DP:PL 0/0:6:0:6:0,0,133 +chrX 3895698 . T . . END=3895699 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,223 +chrX 3895700 . T . . END=3895700 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,199 +chrX 3895701 . C . . END=3895701 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,233 +chrX 3895702 . G . . END=3895702 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,209 +chrX 3895703 . C . . END=3895706 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,213 +chrX 3895707 . G . . END=3895707 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,189 +chrX 3895708 . T . . END=3895709 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,233 +chrX 3895710 . G . . END=3895711 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,199 +chrX 3895712 . C . . END=3895712 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,233 +chrX 3895713 . C . . END=3897919 GT:DP:GQ:MIN_DP:PL 0/0:0:0:0:0,0,0 +chrX 3897920 . T . . END=3898003 GT:DP:GQ:MIN_DP:PL 0/0:9:21:8:0,21,223 +chrX 3898004 . C . . END=3898004 GT:DP:GQ:MIN_DP:PL 0/0:10:5:10:0,5,288 +chrX 3898005 . A . . END=3898065 GT:DP:GQ:MIN_DP:PL 0/0:10:21:9:0,21,303 +chrX 3898066 . G . . END=3898066 GT:DP:GQ:MIN_DP:PL 0/0:8:10:8:0,10,229 +chrX 3898067 . A . . END=3898071 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,243 +chrX 3898072 . G . . END=3898072 GT:DP:GQ:MIN_DP:PL 0/0:7:7:7:0,7,194 +chrX 3898073 . A . . END=3898073 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,233 +chrX 3898074 . A . . END=3898074 GT:DP:GQ:MIN_DP:PL 0/0:7:0:7:0,0,164 +chrX 3898075 . A . . END=3898075 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,223 +chrX 3898076 . A . . END=3898079 GT:DP:GQ:MIN_DP:PL 0/0:7:18:7:0,18,209 +chrX 3898080 . A . . END=3898087 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,315 +chrX 3898088 . T . . END=3898088 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,98 +chrX 3898089 . A . . END=3898089 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,315 +chrX 3898090 . G . . END=3898096 GT:DP:GQ:MIN_DP:PL 0/0:7:0:7:0,0,114 +chrX 3898097 . G . . END=3898097 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,223 +chrX 3898098 . T . . END=3898098 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,129 +chrX 3898099 . A . . END=3898104 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,258 +chrX 3898105 . C . . END=3898105 GT:DP:GQ:MIN_DP:PL 0/0:8:10:8:0,10,219 +chrX 3898106 . A . . END=3898135 GT:DP:GQ:MIN_DP:PL 0/0:11:21:9:0,21,223 +chrX 3898136 . C . . END=3898136 GT:DP:GQ:MIN_DP:PL 0/0:16:13:16:0,13,457 +chrX 3898137 . T . . END=3898393 GT:DP:GQ:MIN_DP:PL 0/0:19:32:14:0,32,436 +chrX 3898394 . T . . END=3898394 GT:DP:GQ:MIN_DP:PL 0/0:14:17:14:0,17,427 +chrX 3898395 . C . . END=3898429 GT:DP:GQ:MIN_DP:PL 0/0:13:21:11:0,21,315 +chrX 3898430 . A . . END=3898430 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,209 +chrX 3898431 . A . . END=3898537 GT:DP:GQ:MIN_DP:PL 0/0:10:21:9:0,21,243 +chrX 3898538 . G . . END=3898538 GT:DP:GQ:MIN_DP:PL 0/0:11:8:11:0,8,323 +chrX 3898539 . T . . END=3898600 GT:DP:GQ:MIN_DP:PL 0/0:12:22:11:0,22,331 +chrX 3898601 . A . . END=3898601 GT:DP:GQ:MIN_DP:PL 0/0:12:11:12:0,11,327 +chrX 3898602 . C . . END=3898607 GT:DP:GQ:MIN_DP:PL 0/0:10:27:9:0,27,293 +chrX 3898608 . A . . END=3898609 GT:DP:GQ:MIN_DP:PL 0/0:10:5:10:0,5,288 +chrX 3898610 . A . . END=3898636 GT:DP:GQ:MIN_DP:PL 0/0:10:27:9:0,27,272 +chrX 3898637 . C . . END=3898637 GT:DP:GQ:MIN_DP:PL 0/0:10:5:10:0,5,248 +chrX 3898638 . T . . END=3898644 GT:DP:GQ:MIN_DP:PL 0/0:11:30:11:0,30,327 +chrX 3898645 . T . . END=3898645 GT:DP:GQ:MIN_DP:PL 0/0:11:8:11:0,8,323 +chrX 3898646 . T . . END=3898658 GT:DP:GQ:MIN_DP:PL 0/0:11:30:11:0,30,318 +chrX 3898659 . A . . END=3898659 GT:DP:GQ:MIN_DP:PL 0/0:11:8:11:0,8,302 +chrX 3898660 . T . . END=3898665 GT:DP:GQ:MIN_DP:PL 0/0:11:30:11:0,30,362 +chrX 3898666 . G . . END=3898666 GT:DP:GQ:MIN_DP:PL 0/0:11:8:11:0,8,292 +chrX 3898667 . A . . END=3898668 GT:DP:GQ:MIN_DP:PL 0/0:11:27:11:0,27,405 +chrX 3898669 . A . . END=3898669 GT:DP:GQ:MIN_DP:PL 0/0:11:19:11:0,19,333 +chrX 3898670 . C . . END=3898692 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,272 +chrX 3898693 . T . . END=3898804 GT:DP:GQ:MIN_DP:PL 0/0:6:12:6:0,12,164 +chrX 3898805 . A . . END=3899317 GT:DP:GQ:MIN_DP:PL 0/0:15:21:8:0,21,223 +chrX 3899318 . T . . END=3899318 GT:DP:GQ:MIN_DP:PL 0/0:11:4:11:0,4,284 +chrX 3899319 . A . . END=3899329 GT:DP:GQ:MIN_DP:PL 0/0:11:24:10:0,24,338 +chrX 3899330 . T . . END=3899330 GT:DP:GQ:MIN_DP:PL 0/0:10:16:10:0,16,299 +chrX 3899331 . A . . END=3899377 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,233 +chrX 3899378 . T . . END=3900484 GT:DP:GQ:MIN_DP:PL 0/0:0:0:0:0,0,0 +chrX 3900485 . A . . END=3900493 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,213 +chrX 3900494 . C . . END=3900494 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,189 +chrX 3900495 . A . . END=3900501 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,243 +chrX 3900502 . A . . END=3900548 GT:DP:GQ:MIN_DP:PL 0/0:6:4:6:0,4,143 +chrX 3900549 . G . . END=3900641 GT:DP:GQ:MIN_DP:PL 0/0:10:21:8:0,21,213 +chrX 3900642 . A . . END=3900642 GT:DP:GQ:MIN_DP:PL 0/0:17:16:17:0,16,511 +chrX 3900643 . G . . END=3900874 GT:DP:GQ:MIN_DP:PL 0/0:21:28:13:0,28,407 +chrX 3900875 . C . . END=3900875 GT:DP:GQ:MIN_DP:PL 0/0:12:11:12:0,11,358 +chrX 3900876 . C . . END=3900922 GT:DP:GQ:MIN_DP:PL 0/0:10:21:8:0,21,243 +chrX 3900923 . T . . END=3902047 GT:DP:GQ:MIN_DP:PL 0/0:0:0:0:0,0,0 +chrX 3902048 . C . . END=3902049 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,233 +chrX 3902050 . T . . END=3902051 GT:DP:GQ:MIN_DP:PL 0/0:7:0:7:0,0,174 +chrX 3902052 . G . . END=3902075 GT:DP:GQ:MIN_DP:PL 0/0:9:21:8:0,21,237 +chrX 3902076 . G . . END=3902077 GT:DP:GQ:MIN_DP:PL 0/0:11:18:11:0,18,303 +chrX 3902078 . G . . END=3902088 GT:DP:GQ:MIN_DP:PL 0/0:12:30:12:0,30,382 +chrX 3902089 . T . . END=3902089 GT:DP:GQ:MIN_DP:PL 0/0:12:11:12:0,11,337 +chrX 3902090 . T . . END=3902122 GT:DP:GQ:MIN_DP:PL 0/0:15:31:12:0,31,387 +chrX 3902123 . C . . END=3902123 GT:DP:GQ:MIN_DP:PL 0/0:15:10:15:0,10,442 +chrX 3902124 . A . . END=3902293 GT:DP:GQ:MIN_DP:PL 0/0:17:20:14:0,20,411 +chrX 3902294 . C T, 160.64 . AS_QUALapprox=|168|0;AS_VarDP=19|8|0;BaseQRankSum=0.856;DP=28;MQRankSum=1.741;QUALapprox=168;RAW_GT_COUNT=0,1,0;RAW_MQandDP=27627,28;ReadPosRankSum=2.418;VarDP=27 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:19,8,0:27:99:0|1:3902294_C_T:168,0,546,225,570,795:3902294:15,4,8,0 +chrX 3902295 . G . . END=3902311 GT:DP:GQ:MIN_DP:PL 0/0:26:64:26:0,64,805 +chrX 3902312 . C G, 26.64 . AS_QUALapprox=|34|0;AS_VarDP=21|4|0;BaseQRankSum=-1.437;DP=25;MQRankSum=-3.367;QUALapprox=34;RAW_GT_COUNT=0,1,0;RAW_MQandDP=25386,25;ReadPosRankSum=0.779;VarDP=25 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:21,4,0:25:34:1|0:3902294_C_T:34,0,674,97,686,783:3902294:17,4,3,1 +chrX 3902313 . G . . END=3902827 GT:DP:GQ:MIN_DP:PL 0/0:18:20:15:0,20,442 +chrX 3902828 . G . . END=3902828 GT:DP:GQ:MIN_DP:PL 0/0:14:17:14:0,17,407 +chrX 3902829 . T . . END=3902862 GT:DP:GQ:MIN_DP:PL 0/0:11:21:9:0,21,213 +chrX 3902863 . A . . END=3904935 GT:DP:GQ:MIN_DP:PL 0/0:0:0:0:0,0,0 +chrX 3904936 . C T, 49.64 . AS_QUALapprox=|57|0;AS_VarDP=2|2|0;BaseQRankSum=0.000;DP=4;MQRankSum=-0.967;QUALapprox=57;RAW_GT_COUNT=0,1,0;RAW_MQandDP=6011,4;ReadPosRankSum=0.000;VarDP=4 GT:AD:DP:GQ:PL:SB 0/1:2,2,0:4:57:57,0,57,64,64,127:2,0,2,0 +chrX 3904937 . G . . END=3904952 GT:DP:GQ:MIN_DP:PL 0/0:5:12:5:0,12,129 +chrX 3904953 . A . . END=3905080 GT:DP:GQ:MIN_DP:PL 0/0:10:21:8:0,21,223 +chrX 3905081 . A G, 254.64 . AS_QUALapprox=|262|0;AS_VarDP=15|10|0;BaseQRankSum=0.898;DP=25;MQRankSum=-3.823;QUALapprox=262;RAW_GT_COUNT=0,1,0;RAW_MQandDP=38136,25;ReadPosRankSum=1.443;VarDP=25 GT:AD:DP:GQ:PL:SB 0/1:15,10,0:25:99:262,0,432,308,462,769:12,3,6,4 +chrX 3905082 . A . . END=3905830 GT:DP:GQ:MIN_DP:PL 0/0:16:36:14:0,36,387 +chrX 3905831 . C . . END=3905831 GT:DP:GQ:MIN_DP:PL 0/0:13:14:13:0,14,392 +chrX 3905832 . A . . END=3906328 GT:DP:GQ:MIN_DP:PL 0/0:14:21:8:0,21,268 +chrX 3906329 . A . . END=3906330 GT:DP:GQ:MIN_DP:PL 0/0:10:5:10:0,5,278 +chrX 3906331 . T . . END=3906367 GT:DP:GQ:MIN_DP:PL 0/0:10:21:9:0,21,268 +chrX 3906368 . T . . END=3906379 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,149 +chrX 3906380 . C . . END=3906408 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,213 +chrX 3906409 . T . . END=3906887 GT:DP:GQ:MIN_DP:PL 0/0:2:0:2:0,0,0 +chrX 3906888 . G . . END=3906891 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,243 +chrX 3906892 . G . . END=3906905 GT:DP:GQ:MIN_DP:PL 0/0:7:0:7:0,0,174 +chrX 3906906 . C . . END=3906907 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,243 +chrX 3906908 . T . . END=3906909 GT:DP:GQ:MIN_DP:PL 0/0:7:0:7:0,0,174 +chrX 3906910 . G . . END=3906914 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,233 +chrX 3906915 . C . . END=3906918 GT:DP:GQ:MIN_DP:PL 0/0:7:0:7:0,0,174 +chrX 3906919 . G . . END=3906984 GT:DP:GQ:MIN_DP:PL 0/0:12:21:9:0,21,223 +chrX 3906985 . C . . END=3906985 GT:DP:GQ:MIN_DP:PL 0/0:12:1:12:0,1,338 +chrX 3906986 . A . . END=3906992 GT:DP:GQ:MIN_DP:PL 0/0:13:33:13:0,33,422 +chrX 3906993 . A . . END=3906993 GT:DP:GQ:MIN_DP:PL 0/0:13:14:13:0,14,362 +chrX 3906994 . A . . END=3906995 GT:DP:GQ:MIN_DP:PL 0/0:13:25:13:0,25,403 +chrX 3906996 . A . . END=3906996 GT:DP:GQ:MIN_DP:PL 0/0:13:14:13:0,14,382 +chrX 3906997 . A . . END=3906998 GT:DP:GQ:MIN_DP:PL 0/0:13:33:13:0,33,495 +chrX 3906999 . A . . END=3906999 GT:DP:GQ:MIN_DP:PL 0/0:13:4:13:0,4,382 +chrX 3907000 . A . . END=3907005 GT:DP:GQ:MIN_DP:PL 0/0:12:22:12:0,22,358 +chrX 3907006 . A . . END=3907006 GT:DP:GQ:MIN_DP:PL 0/0:11:18:11:0,18,313 +chrX 3907007 . A . . END=3907010 GT:DP:GQ:MIN_DP:PL 0/0:11:30:11:0,30,348 +chrX 3907011 . A . . END=3907011 GT:DP:GQ:MIN_DP:PL 0/0:11:18:11:0,18,303 +chrX 3907012 . C . . END=3907013 GT:DP:GQ:MIN_DP:PL 0/0:11:30:11:0,30,338 +chrX 3907014 . A . . END=3907014 GT:DP:GQ:MIN_DP:PL 0/0:11:19:11:0,19,323 +chrX 3907015 . C . . END=3907025 GT:DP:GQ:MIN_DP:PL 0/0:11:21:11:0,21,315 +chrX 3907026 . T . . END=3907026 GT:DP:GQ:MIN_DP:PL 0/0:10:16:10:0,16,299 +chrX 3907027 . T . . END=3907033 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,315 +chrX 3907034 . A . . END=3907034 GT:DP:GQ:MIN_DP:PL 0/0:8:10:8:0,10,229 +chrX 3907035 . T . . END=3907037 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,233 +chrX 3907038 . C . . END=3907038 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,209 +chrX 3907039 . C . . END=3907055 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,233 +chrX 3907056 . A . . END=3907056 GT:DP:GQ:MIN_DP:PL 0/0:9:13:9:0,13,264 +chrX 3907057 . A . . END=3907066 GT:DP:GQ:MIN_DP:PL 0/0:11:24:9:0,24,360 +chrX 3907067 . T . . END=3907067 GT:DP:GQ:MIN_DP:PL 0/0:13:14:13:0,14,372 +chrX 3907068 . A . . END=3907148 GT:DP:GQ:MIN_DP:PL 0/0:30:22:13:0,22,442 +chrX 3907149 . A . . END=3907149 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,974 +chrX 3907150 . C . . END=3907150 GT:DP:GQ:MIN_DP:PL 0/0:41:29:41:0,29,1167 +chrX 3907151 . C . . END=3907151 GT:DP:GQ:MIN_DP:PL 0/0:40:16:40:0,16,1142 +chrX 3907152 . T . . END=3907178 GT:DP:GQ:MIN_DP:PL 0/0:48:39:44:0,39,585 +chrX 3907179 . G . . END=3907185 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,299 +chrX 3907186 . G . . END=3907198 GT:DP:GQ:MIN_DP:PL 0/0:22:31:21:0,31,600 +chrX 3907199 . G . . END=3907199 GT:DP:GQ:MIN_DP:PL 0/0:23:0:23:0,0,640 +chrX 3907200 . C G, 134.64 . AS_QUALapprox=|142|0;AS_VarDP=16|6|0;BaseQRankSum=0.961;DP=23;MQRankSum=-0.559;QUALapprox=142;RAW_GT_COUNT=0,1,0;RAW_MQandDP=35906,23;ReadPosRankSum=0.664;VarDP=22 GT:AD:DP:GQ:PL:SB 0/1:16,6,0:22:99:142,0,460,191,478,669:0,16,0,6 +chrX 3907201 . C . . END=3907452 GT:DP:GQ:MIN_DP:PL 0/0:20:24:15:0,24,472 +chrX 3907453 . C . . END=3907453 GT:DP:GQ:MIN_DP:PL 0/0:14:17:14:0,17,427 +chrX 3907454 . T . . END=3907497 GT:DP:GQ:MIN_DP:PL 0/0:12:21:9:0,21,268 +chrX 3907498 . C . . END=3907564 GT:DP:GQ:MIN_DP:PL 0/0:4:0:4:0,0,94 +chrX 3907565 . T . . END=3907569 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,233 +chrX 3907570 . T . . END=3907570 GT:DP:GQ:MIN_DP:PL 0/0:7:18:7:0,18,270 +chrX 3907571 . T . . END=3907924 GT:DP:GQ:MIN_DP:PL 0/0:14:21:8:0,21,233 +chrX 3907925 . G . . END=3907925 GT:DP:GQ:MIN_DP:PL 0/0:14:17:14:0,17,377 +chrX 3907926 . T . . END=3907968 GT:DP:GQ:MIN_DP:PL 0/0:14:24:13:0,24,362 +chrX 3907969 . A . . END=3907969 GT:DP:GQ:MIN_DP:PL 0/0:13:14:13:0,14,382 +chrX 3907970 . A . . END=3907973 GT:DP:GQ:MIN_DP:PL 0/0:13:33:13:0,33,432 +chrX 3907974 . C . . END=3907974 GT:DP:GQ:MIN_DP:PL 0/0:13:14:13:0,14,372 +chrX 3907975 . C . . END=3908006 GT:DP:GQ:MIN_DP:PL 0/0:11:24:11:0,24,278 +chrX 3908007 . C . . END=3908007 GT:DP:GQ:MIN_DP:PL 0/0:9:2:9:0,2,253 +chrX 3908008 . T . . END=3908019 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,315 +chrX 3908020 . T . . END=3908020 GT:DP:GQ:MIN_DP:PL 0/0:8:10:8:0,10,219 +chrX 3908021 . C . . END=3908054 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,217 +chrX 3908055 . G . . END=3908055 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,209 +chrX 3908056 . A . . END=3908061 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,233 +chrX 3908062 . T . . END=3908062 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,209 +chrX 3908063 . C . . END=3908063 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,233 +chrX 3908064 . C . . END=3908065 GT:DP:GQ:MIN_DP:PL 0/0:7:0:7:0,0,184 +chrX 3908066 . G . . END=3908068 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,213 +chrX 3908069 . G . . END=3908069 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,209 +chrX 3908070 . C . . END=3908072 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,223 +chrX 3908073 . G . . END=3913779 GT:DP:GQ:MIN_DP:PL 0/0:0:0:0:0,0,0 +chrX 3913780 . CT C, 73.60 . AS_QUALapprox=|81|0;AS_VarDP=1|2|0;BaseQRankSum=0.000;DP=3;MQRankSum=0.000;QUALapprox=81;RAW_GT_COUNT=0,1,0;RAW_MQandDP=1875,3;ReadPosRankSum=0.000;VarDP=3 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:1,2,0:3:36:0|1:3913780_CT_C:81,0,36,84,42,126:3913780:1,0,2,0 +chrX 3913782 . T . . END=3913784 GT:DP:GQ:MIN_DP:PL 0/0:3:9:3:0,9,104 +chrX 3913785 . T C, 73.64 . AS_QUALapprox=|81|0;AS_VarDP=1|2|0;BaseQRankSum=0.000;DP=3;MQRankSum=0.000;QUALapprox=81;RAW_GT_COUNT=0,1,0;RAW_MQandDP=1875,3;ReadPosRankSum=0.000;VarDP=3 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:1,2,0:3:36:0|1:3913780_CT_C:81,0,36,84,42,126:3913780:1,0,2,0 +chrX 3913786 . T . . END=3913904 GT:DP:GQ:MIN_DP:PL 0/0:5:0:5:0,0,90 +chrX 3913905 . A . . END=3913914 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,203 +chrX 3913915 . C . . END=3914442 GT:DP:GQ:MIN_DP:PL 0/0:2:0:2:0,0,0 +chrX 3914443 . C . . END=3914447 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,202 +chrX 3914448 . A . . END=3914448 GT:DP:GQ:MIN_DP:PL 0/0:8:9:8:0,9,199 +chrX 3914449 . C . . END=3914460 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,233 +chrX 3914461 . T . . END=3914461 GT:DP:GQ:MIN_DP:PL 0/0:10:0:10:0,0,217 +chrX 3914462 . T . . END=3914472 GT:DP:GQ:MIN_DP:PL 0/0:10:24:9:0,24,248 +chrX 3914473 . C . . END=3914473 GT:DP:GQ:MIN_DP:PL 0/0:11:18:11:0,18,303 +chrX 3914474 . A . . END=3914493 GT:DP:GQ:MIN_DP:PL 0/0:12:22:9:0,22,303 +chrX 3914494 . T . . END=3914494 GT:DP:GQ:MIN_DP:PL 0/0:13:14:13:0,14,352 +chrX 3914495 . G . . END=3914522 GT:DP:GQ:MIN_DP:PL 0/0:16:20:14:0,20,416 +chrX 3914523 . G . . END=3914523 GT:DP:GQ:MIN_DP:PL 0/0:17:12:17:0,12,452 +chrX 3914524 . C . . END=3914524 GT:DP:GQ:MIN_DP:PL 0/0:16:48:16:0,48,526 +chrX 3914525 . T . . END=3914525 GT:DP:GQ:MIN_DP:PL 0/0:16:9:16:0,9,448 +chrX 3914526 . C . . END=3914530 GT:DP:GQ:MIN_DP:PL 0/0:16:42:16:0,42,457 +chrX 3914531 . T . . END=3914531 GT:DP:GQ:MIN_DP:PL 0/0:17:2:17:0,2,472 +chrX 3914532 . G . . END=3914552 GT:DP:GQ:MIN_DP:PL 0/0:17:23:16:0,23,467 +chrX 3914553 . A . . END=3914553 GT:DP:GQ:MIN_DP:PL 0/0:16:19:16:0,19,448 +chrX 3914554 . A . . END=3914567 GT:DP:GQ:MIN_DP:PL 0/0:16:30:15:0,30,421 +chrX 3914568 . T . . END=3914568 GT:DP:GQ:MIN_DP:PL 0/0:15:10:15:0,10,422 +chrX 3914569 . A . . END=3915033 GT:DP:GQ:MIN_DP:PL 0/0:16:21:9:0,21,283 +chrX 3915034 . G . . END=3926008 GT:DP:GQ:MIN_DP:PL 0/0:0:0:0:0,0,0 +chrX 3926009 . A . . END=3926017 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,223 +chrX 3926018 . C . . END=3926018 GT:DP:GQ:MIN_DP:PL 0/0:7:7:7:0,7,194 +chrX 3926019 . T . . END=3926928 GT:DP:GQ:MIN_DP:PL 0/0:15:21:9:0,21,243 +chrX 3926929 . C . . END=3926929 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,864 +chrX 3926930 . A . . END=3927060 GT:DP:GQ:MIN_DP:PL 0/0:44:61:44:0,61,982 +chrX 3927061 . C T, 260.64 . AS_QUALapprox=|268|0;AS_VarDP=20|13|0;BaseQRankSum=-2.929;DP=34;MQRankSum=-0.309;QUALapprox=268;RAW_GT_COUNT=0,1,0;RAW_MQandDP=36073,34;ReadPosRankSum=-1.364;VarDP=33 GT:AD:DP:GQ:PL:SB 0/1:20,13,0:33:99:268,0,531,328,570,898:6,14,2,11 +chrX 3927062 . G . . END=3927216 GT:DP:GQ:MIN_DP:PL 0/0:17:30:14:0,30,450 +chrX 3927217 . A . . END=3927217 GT:DP:GQ:MIN_DP:PL 0/0:13:14:13:0,14,382 +chrX 3927218 . A . . END=3928290 GT:DP:GQ:MIN_DP:PL 0/0:14:25:13:0,25,383 +chrX 3928291 . C . . END=3928291 GT:DP:GQ:MIN_DP:PL 0/0:16:9:16:0,9,448 +chrX 3928292 . C . . END=3928319 GT:DP:GQ:MIN_DP:PL 0/0:17:42:17:0,42,516 +chrX 3928320 . C T, 119.64 . AS_QUALapprox=|127|0;AS_VarDP=11|6|0;BaseQRankSum=0.000;DP=17;MQRankSum=0.000;QUALapprox=127;RAW_GT_COUNT=0,1,0;RAW_MQandDP=10625,17;ReadPosRankSum=-0.252;VarDP=17 GT:AD:DP:GQ:PL:SB 0/1:11,6,0:17:99:127,0,276,161,294,455:0,11,0,6 +chrX 3928321 . A . . END=3928419 GT:DP:GQ:MIN_DP:PL 0/0:12:27:11:0,27,317 +chrX 3928420 . T . . END=3928420 GT:DP:GQ:MIN_DP:PL 0/0:11:8:11:0,8,323 +chrX 3928421 . C . . END=3928433 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,293 +chrX 3928434 . T . . END=3930272 GT:DP:GQ:MIN_DP:PL 0/0:0:0:0:0,0,0 +chrX 3930273 . C . . END=3930281 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,233 +chrX 3930282 . C . . END=3930299 GT:DP:GQ:MIN_DP:PL 0/0:7:18:7:0,18,199 +chrX 3930300 . A . . END=3930318 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,207 +chrX 3930319 . T . . END=3930319 GT:DP:GQ:MIN_DP:PL 0/0:9:2:9:0,2,253 +chrX 3930320 . C . . END=3930329 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,233 +chrX 3930330 . T . . END=3930330 GT:DP:GQ:MIN_DP:PL 0/0:9:2:9:0,2,243 +chrX 3930331 . G . . END=3930334 GT:DP:GQ:MIN_DP:PL 0/0:9:24:9:0,24,360 +chrX 3930335 . G . . END=3930335 GT:DP:GQ:MIN_DP:PL 0/0:10:0:10:0,0,268 +chrX 3930336 . C . . END=3930338 GT:DP:GQ:MIN_DP:PL 0/0:11:27:10:0,27,405 +chrX 3930339 . A . . END=3930339 GT:DP:GQ:MIN_DP:PL 0/0:11:8:11:0,8,313 +chrX 3930340 . C . . END=3930952 GT:DP:GQ:MIN_DP:PL 0/0:19:21:12:0,21,348 +chrX 3930953 . A . . END=3930953 GT:DP:GQ:MIN_DP:PL 0/0:20:11:20:0,11,567 +chrX 3930954 . C . . END=3930982 GT:DP:GQ:MIN_DP:PL 0/0:19:25:18:0,25,518 +chrX 3930983 . G . . END=3930983 GT:DP:GQ:MIN_DP:PL 0/0:16:13:16:0,13,487 +chrX 3930984 . T . . END=3931005 GT:DP:GQ:MIN_DP:PL 0/0:16:21:15:0,21,315 +chrX 3931006 . C . . END=3931224 GT:DP:GQ:MIN_DP:PL 0/0:4:0:4:0,0,35 +chrX 3931225 . T . . END=3931239 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,202 +chrX 3931240 . G . . END=3931258 GT:DP:GQ:MIN_DP:PL 0/0:7:0:7:0,0,174 +chrX 3931259 . G . . END=3931282 GT:DP:GQ:MIN_DP:PL 0/0:10:21:8:0,21,243 +chrX 3931283 . C . . END=3931283 GT:DP:GQ:MIN_DP:PL 0/0:12:11:12:0,11,358 +chrX 3931284 . C . . END=3931345 GT:DP:GQ:MIN_DP:PL 0/0:15:20:13:0,20,382 +chrX 3931346 . A . . END=3931346 GT:DP:GQ:MIN_DP:PL 0/0:16:13:16:0,13,487 +chrX 3931347 . G . . END=3931356 GT:DP:GQ:MIN_DP:PL 0/0:16:48:16:0,48,536 +chrX 3931357 . G . . END=3931357 GT:DP:GQ:MIN_DP:PL 0/0:18:19:18:0,19,546 +chrX 3931358 . G . . END=3931397 GT:DP:GQ:MIN_DP:PL 0/0:16:29:14:0,29,466 +chrX 3931398 . T . . END=3931398 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,328 +chrX 3931399 . G . . END=3931450 GT:DP:GQ:MIN_DP:PL 0/0:11:21:9:0,21,292 +chrX 3931451 . A . . END=3931454 GT:DP:GQ:MIN_DP:PL 0/0:9:18:9:0,18,270 +chrX 3931455 . T . . END=3931496 GT:DP:GQ:MIN_DP:PL 0/0:14:21:11:0,21,293 +chrX 3931497 . G . . END=3931497 GT:DP:GQ:MIN_DP:PL 0/0:16:13:16:0,13,416 +chrX 3931498 . A . . END=3931544 GT:DP:GQ:MIN_DP:PL 0/0:17:37:16:0,37,491 +chrX 3931545 . A C, 9.65 . AS_QUALapprox=|17|0;AS_VarDP=14|2|0;BaseQRankSum=0.567;DP=18;MQRankSum=2.835;QUALapprox=17;RAW_GT_COUNT=0,1,0;RAW_MQandDP=12225,18;ReadPosRankSum=0.477;VarDP=16 GT:AD:DP:GQ:PL:SB 0/1:14,2,0:16:17:17,0,349,59,355,413:0,14,1,1 +chrX 3931546 . C . . END=3931630 GT:DP:GQ:MIN_DP:PL 0/0:20:33:15:0,33,495 +chrX 3931631 . C . . END=3931631 GT:DP:GQ:MIN_DP:PL 0/0:14:17:14:0,17,427 +chrX 3931632 . T . . END=3931652 GT:DP:GQ:MIN_DP:PL 0/0:12:21:10:0,21,278 +chrX 3931653 . G . . END=3931790 GT:DP:GQ:MIN_DP:PL 0/0:4:0:4:0,0,45 +chrX 3931791 . C . . END=3931795 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,243 +chrX 3931796 . A . . END=3931796 GT:DP:GQ:MIN_DP:PL 0/0:7:7:7:0,7,194 +chrX 3931797 . A . . END=3931798 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,233 +chrX 3931799 . C . . END=3931799 GT:DP:GQ:MIN_DP:PL 0/0:7:7:7:0,7,194 +chrX 3931800 . A . . END=3931847 GT:DP:GQ:MIN_DP:PL 0/0:10:24:9:0,24,258 +chrX 3931848 . A . . END=3931848 GT:DP:GQ:MIN_DP:PL 0/0:11:8:11:0,8,313 +chrX 3931849 . A . . END=3931871 GT:DP:GQ:MIN_DP:PL 0/0:10:27:10:0,27,303 +chrX 3931872 . G . . END=3931872 GT:DP:GQ:MIN_DP:PL 0/0:9:13:9:0,13,264 +chrX 3931873 . A . . END=3931895 GT:DP:GQ:MIN_DP:PL 0/0:12:30:12:0,30,317 +chrX 3931896 . T . . END=3931896 GT:DP:GQ:MIN_DP:PL 0/0:12:1:12:0,1,327 +chrX 3931897 . T . . END=3931902 GT:DP:GQ:MIN_DP:PL 0/0:12:36:12:0,36,397 +chrX 3931903 . A . . END=3931903 GT:DP:GQ:MIN_DP:PL 0/0:12:1:12:0,1,348 +chrX 3931904 . T . . END=3931945 GT:DP:GQ:MIN_DP:PL 0/0:13:27:12:0,27,376 +chrX 3931946 . A . . END=3931946 GT:DP:GQ:MIN_DP:PL 0/0:12:1:12:0,1,348 +chrX 3931947 . A . . END=3932376 GT:DP:GQ:MIN_DP:PL 0/0:15:21:10:0,21,258 +chrX 3932377 . A . . END=3932377 GT:DP:GQ:MIN_DP:PL 0/0:10:16:10:0,16,299 +chrX 3932378 . G . . END=3932410 GT:DP:GQ:MIN_DP:PL 0/0:11:27:10:0,27,303 +chrX 3932411 . A . . END=3932411 GT:DP:GQ:MIN_DP:PL 0/0:12:11:12:0,11,348 +chrX 3932412 . C . . END=3932424 GT:DP:GQ:MIN_DP:PL 0/0:12:33:12:0,33,362 +chrX 3932425 . A . . END=3932425 GT:DP:GQ:MIN_DP:PL 0/0:11:19:11:0,19,323 +chrX 3932426 . T . . END=3932485 GT:DP:GQ:MIN_DP:PL 0/0:10:21:9:0,21,278 +chrX 3932486 . C . . END=3932929 GT:DP:GQ:MIN_DP:PL 0/0:5:0:5:0,0,45 +chrX 3932930 . A . . END=3932943 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,223 +chrX 3932944 . G . . END=3932944 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,209 +chrX 3932945 . G . . END=3932945 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,233 +chrX 3932946 . A . . END=3932951 GT:DP:GQ:MIN_DP:PL 0/0:7:18:7:0,18,270 +chrX 3932952 . T . . END=3932953 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,315 +chrX 3932954 . G . . END=3932954 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,219 +chrX 3932955 . C . . END=3932975 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,202 +chrX 3932976 . C . . END=3932993 GT:DP:GQ:MIN_DP:PL 0/0:7:4:7:0,4,160 +chrX 3932994 . C . . END=3933002 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,183 +chrX 3933003 . C . . END=3933003 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,168 +chrX 3933004 . A . . END=3933004 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,223 +chrX 3933005 . G . . END=3933005 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,178 +chrX 3933006 . A . . END=3933015 GT:DP:GQ:MIN_DP:PL 0/0:9:24:8:0,24,217 +chrX 3933016 . G . . END=3933016 GT:DP:GQ:MIN_DP:PL 0/0:10:16:10:0,16,268 +chrX 3933017 . T . . END=3933017 GT:DP:GQ:MIN_DP:PL 0/0:12:36:12:0,36,357 +chrX 3933018 . G . . END=3933018 GT:DP:GQ:MIN_DP:PL 0/0:12:7:12:0,7,279 +chrX 3933019 . G . . END=3933229 GT:DP:GQ:MIN_DP:PL 0/0:19:21:11:0,21,223 +chrX 3933230 . T . . END=3933348 GT:DP:GQ:MIN_DP:PL 0/0:4:1:4:0,1,84 +chrX 3933349 . T . . END=3933356 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,202 +chrX 3933357 . C . . END=3933357 GT:DP:GQ:MIN_DP:PL 0/0:8:10:8:0,10,229 +chrX 3933358 . A . . END=3933369 GT:DP:GQ:MIN_DP:PL 0/0:8:24:8:0,24,258 +chrX 3933370 . A . . END=3933370 GT:DP:GQ:MIN_DP:PL 0/0:9:13:9:0,13,254 +chrX 3933371 . C . . END=3933384 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,315 +chrX 3933385 . T . . END=3933385 GT:DP:GQ:MIN_DP:PL 0/0:9:13:9:0,13,264 +chrX 3933386 . G . . END=3933389 GT:DP:GQ:MIN_DP:PL 0/0:9:24:9:0,24,360 +chrX 3933390 . T . . END=3933390 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,209 +chrX 3933391 . T . . END=3933455 GT:DP:GQ:MIN_DP:PL 0/0:10:21:9:0,21,258 +chrX 3933456 . T . . END=3933456 GT:DP:GQ:MIN_DP:PL 0/0:10:16:10:0,16,299 +chrX 3933457 . A . . END=3933535 GT:DP:GQ:MIN_DP:PL 0/0:12:22:9:0,22,303 +chrX 3933536 . C . . END=3933536 GT:DP:GQ:MIN_DP:PL 0/0:11:8:11:0,8,313 +chrX 3933537 . A . . END=3933537 GT:DP:GQ:MIN_DP:PL 0/0:12:33:12:0,33,495 +chrX 3933538 . C . . END=3933538 GT:DP:GQ:MIN_DP:PL 0/0:12:11:12:0,11,358 +chrX 3933539 . A . . END=3933551 GT:DP:GQ:MIN_DP:PL 0/0:12:30:12:0,30,338 +chrX 3933552 . A . . END=3933552 GT:DP:GQ:MIN_DP:PL 0/0:14:17:14:0,17,427 +chrX 3933553 . A . . END=3933604 GT:DP:GQ:MIN_DP:PL 0/0:15:26:14:0,26,438 +chrX 3933605 . G . . END=3933605 GT:DP:GQ:MIN_DP:PL 0/0:14:7:14:0,7,407 +chrX 3933606 . G . . END=3933636 GT:DP:GQ:MIN_DP:PL 0/0:13:22:12:0,22,350 +chrX 3933637 . G . . END=3933637 GT:DP:GQ:MIN_DP:PL 0/0:12:11:12:0,11,358 +chrX 3933638 . A . . END=3933638 GT:DP:GQ:MIN_DP:PL 0/0:13:33:13:0,33,495 +chrX 3933639 . T . . END=3933639 GT:DP:GQ:MIN_DP:PL 0/0:11:8:11:0,8,293 +chrX 3933640 . A . . END=3933655 GT:DP:GQ:MIN_DP:PL 0/0:12:30:12:0,30,376 +chrX 3933656 . G . . END=3933656 GT:DP:GQ:MIN_DP:PL 0/0:12:11:12:0,11,358 +chrX 3933657 . A . . END=3933788 GT:DP:GQ:MIN_DP:PL 0/0:15:20:12:0,20,307 +chrX 3933789 . T A, 283.64 . AS_QUALapprox=|291|0;AS_VarDP=18|13|0;BaseQRankSum=1.563;DP=32;MQRankSum=-2.836;QUALapprox=291;RAW_GT_COUNT=0,1,0;RAW_MQandDP=30994,32;ReadPosRankSum=-1.181;VarDP=31 GT:AD:DP:GQ:PL:SB 0/1:18,13,0:31:99:291,0,462,345,502,847:12,6,3,10 +chrX 3933790 . G . . END=3934017 GT:DP:GQ:MIN_DP:PL 0/0:27:42:27:0,42,495 +chrX 3934018 . G . . END=3934018 GT:DP:GQ:MIN_DP:PL 0/0:19:7:19:0,7,501 +chrX 3934019 . G . . END=3934088 GT:DP:GQ:MIN_DP:PL 0/0:16:23:15:0,23,405 +chrX 3934089 . T . . END=3934089 GT:DP:GQ:MIN_DP:PL 0/0:15:10:15:0,10,402 +chrX 3934090 . T . . END=3934121 GT:DP:GQ:MIN_DP:PL 0/0:11:27:9:0,27,303 +chrX 3934122 . G . . END=3934122 GT:DP:GQ:MIN_DP:PL 0/0:11:8:11:0,8,313 +chrX 3934123 . T . . END=3934133 GT:DP:GQ:MIN_DP:PL 0/0:11:21:10:0,21,315 +chrX 3934134 . G . . END=3934793 GT:DP:GQ:MIN_DP:PL 0/0:3:0:3:0,0,0 +chrX 3934794 . T . . END=3934799 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,268 +chrX 3934800 . G . . END=3934800 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,209 +chrX 3934801 . A . . END=3934811 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,243 +chrX 3934812 . G . . END=3934812 GT:DP:GQ:MIN_DP:PL 0/0:9:2:9:0,2,243 +chrX 3934813 . C . . END=3934994 GT:DP:GQ:MIN_DP:PL 0/0:15:20:9:0,20,292 +chrX 3934995 . T . . END=3934995 GT:DP:GQ:MIN_DP:PL 0/0:26:18:26:0,18,684 +chrX 3934996 . A . . END=3935449 GT:DP:GQ:MIN_DP:PL 0/0:16:23:15:0,23,466 +chrX 3935450 . G . . END=3935450 GT:DP:GQ:MIN_DP:PL 0/0:17:16:17:0,16,511 +chrX 3935451 . A . . END=3935495 GT:DP:GQ:MIN_DP:PL 0/0:13:24:12:0,24,342 +chrX 3935496 . C . . END=3935496 GT:DP:GQ:MIN_DP:PL 0/0:11:18:11:0,18,313 +chrX 3935497 . A . . END=3935510 GT:DP:GQ:MIN_DP:PL 0/0:11:27:9:0,27,297 +chrX 3935511 . C . . END=3935511 GT:DP:GQ:MIN_DP:PL 0/0:11:8:11:0,8,323 +chrX 3935512 . T . . END=3935514 GT:DP:GQ:MIN_DP:PL 0/0:10:30:10:0,30,297 +chrX 3935515 . C . . END=3935515 GT:DP:GQ:MIN_DP:PL 0/0:10:0:10:0,0,238 +chrX 3935516 . G . . END=3935592 GT:DP:GQ:MIN_DP:PL 0/0:10:21:9:0,21,243 +chrX 3935593 . T . . END=3937180 GT:DP:GQ:MIN_DP:PL 0/0:1:0:1:0,0,0 +chrX 3937181 . T . . END=3937183 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,233 +chrX 3937184 . T . . END=3937184 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,209 +chrX 3937185 . T . . END=3937196 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,233 +chrX 3937197 . G . . END=3937197 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,199 +chrX 3937198 . A . . END=3937200 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,202 +chrX 3937201 . G . . END=3937201 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,178 +chrX 3937202 . C . . END=3937239 GT:DP:GQ:MIN_DP:PL 0/0:10:21:8:0,21,223 +chrX 3937240 . A . . END=3937240 GT:DP:GQ:MIN_DP:PL 0/0:10:5:10:0,5,288 +chrX 3937241 . T . . END=3937242 GT:DP:GQ:MIN_DP:PL 0/0:11:33:11:0,33,342 +chrX 3937243 . A . . END=3937243 GT:DP:GQ:MIN_DP:PL 0/0:11:18:11:0,18,313 +chrX 3937244 . T . . END=3937737 GT:DP:GQ:MIN_DP:PL 0/0:14:33:11:0,33,362 +chrX 3937738 . T C, 685.64 . AS_QUALapprox=|693|0;AS_VarDP=27|25|0;BaseQRankSum=-0.589;DP=55;MQRankSum=0.000;QUALapprox=693;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=0.889;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:27,25,0:52:99:693,0,757,774,833,1607:13,14,13,12 +chrX 3937739 . T . . END=3938152 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,101,1461 +chrX 3938153 . AGT A, 367.60 . AS_QUALapprox=|375|0;AS_VarDP=23|13|0;BaseQRankSum=-2.574;DP=45;MQRankSum=0.000;QUALapprox=375;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=-0.527;VarDP=36 GT:AD:DP:GQ:PL:SB 0/1:23,13,0:36:99:375,0,705,444,745,1189:10,13,5,8 +chrX 3938156 . G . . END=3939075 GT:DP:GQ:MIN_DP:PL 0/0:50:75:50:0,75,1176 +chrX 3939076 . T C, 1371.06 . AS_QUALapprox=|1385|0;AS_VarDP=0|43|0;DP=44;QUALapprox=1385;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158400,44;VarDP=43 GT:AD:DP:GQ:PL:SB 1/1:0,43,0:43:99:1385,129,0,1385,129,1385:0,0,30,13 +chrX 3939077 . A . . END=3940549 GT:DP:GQ:MIN_DP:PL 0/0:57:78:57:0,78,1195 +chrX 3940550 . A T, 714.64 . AS_QUALapprox=|722|0;AS_VarDP=31|28|0;BaseQRankSum=-1.446;DP=59;MQRankSum=0.000;QUALapprox=722;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-1.709;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:31,28,0:59:99:722,0,861,815,945,1760:13,18,15,13 +chrX 3940551 . A . . END=3941332 GT:DP:GQ:MIN_DP:PL 0/0:56:65:56:0,65,1021 +chrX 3941333 . A AT, 221.60 . AS_QUALapprox=|229|0;AS_VarDP=10|17|0;BaseQRankSum=-0.507;DP=43;MQRankSum=0.497;QUALapprox=229;RAW_GT_COUNT=0,1,0;RAW_MQandDP=152834,43;ReadPosRankSum=0.302;VarDP=27 GT:AD:DP:GQ:PL:SB 0/1:10,17,0:27:99:229,0,109,258,158,416:2,8,9,8 +chrX 3941334 . T . . END=3941354 GT:DP:GQ:MIN_DP:PL 0/0:48:78:48:0,78,1170 +chrX 3941355 . G . . END=3941356 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,525 +chrX 3941357 . A . . END=3941364 GT:DP:GQ:MIN_DP:PL 0/0:42:42:42:0,42,948 +chrX 3941365 . G . . END=3941365 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,542 +chrX 3941366 . T . . END=3941366 GT:DP:GQ:MIN_DP:PL 0/0:37:86:37:0,86,1146 +chrX 3941367 . A . . END=3941367 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,871 +chrX 3941368 . G . . END=3942190 GT:DP:GQ:MIN_DP:PL 0/0:72:43:72:0,43,941 +chrX 3942191 . A AT, 228.60 . AS_QUALapprox=|236|0;AS_VarDP=15|16|0;BaseQRankSum=-1.346;DP=55;MQRankSum=0.000;QUALapprox=236;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194490,55;ReadPosRankSum=0.692;VarDP=31 GT:AD:DP:GQ:PL:SB 0/1:15,16,0:31:99:236,0,251,281,298,579:11,4,4,12 +chrX 3942192 . T . . END=3942208 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,102,1530 +chrX 3942209 . G . . END=3942209 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,894 +chrX 3942210 . A . . END=3942658 GT:DP:GQ:MIN_DP:PL 0/0:48:42:48:0,42,963 +chrX 3942659 . CTTCTTTCTTTCT C,CTTCTTTCT, 462.02 . AS_QUALapprox=|308|193|0;AS_VarDP=1|9|6|0;BaseQRankSum=-0.428;DP=41;MQRankSum=0.000;QUALapprox=479;RAW_GT_COUNT=0,0,1;RAW_MQandDP=145600,41;ReadPosRankSum=-1.195;VarDP=16 GT:AD:DP:GQ:PL:SB 1/2:1,9,6,0:16:99:479,171,418,286,0,287,500,332,325,636:1,0,5,10 +chrX 3942672 . T . . END=3942726 GT:DP:GQ:MIN_DP:PL 0/0:39:36:37:0,36,540 +chrX 3942727 . T . . END=3942727 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,745 +chrX 3942728 . T . . END=3945841 GT:DP:GQ:MIN_DP:PL 0/0:54:21:40:0,21,932 +chrX 3945842 . A G, 945.64 . AS_QUALapprox=|953|0;AS_VarDP=32|34|0;BaseQRankSum=1.176;DP=67;MQRankSum=0.000;QUALapprox=953;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=-0.892;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:32,34,0:66:99:953,0,854,1049,956,2006:19,13,21,13 +chrX 3945843 . T . . END=3948079 GT:DP:GQ:MIN_DP:PL 0/0:56:95:56:0,95,1191 +chrX 3948080 . A G, 748.64 . AS_QUALapprox=|756|0;AS_VarDP=20|27|0;BaseQRankSum=-1.758;DP=48;MQRankSum=0.000;QUALapprox=756;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=-1.012;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:20,27,0:47:99:756,0,554,817,635,1452:12,8,12,15 +chrX 3948081 . C . . END=3948693 GT:DP:GQ:MIN_DP:PL 0/0:59:89:59:0,89,1430 +chrX 3948694 . A C, 668.64 . AS_QUALapprox=|676|0;AS_VarDP=24|28|0;BaseQRankSum=-2.073;DP=54;MQRankSum=0.000;QUALapprox=676;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=-1.423;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:24,28,0:52:99:676,0,634,748,717,1465:11,13,10,18 +chrX 3948695 . T . . END=3949889 GT:DP:GQ:MIN_DP:PL 0/0:60:95:60:0,95,1087 +chrX 3949890 . T G, 321.64 . AS_QUALapprox=|329|0;AS_VarDP=18|13|0;BaseQRankSum=-0.752;DP=31;MQRankSum=-4.020;QUALapprox=329;RAW_GT_COUNT=0,1,0;RAW_MQandDP=97112,31;ReadPosRankSum=0.701;VarDP=31 GT:AD:DP:GQ:PL:SB 0/1:18,13,0:31:99:329,0,498,383,537,920:10,8,5,8 +chrX 3949891 . C . . END=3950052 GT:DP:GQ:MIN_DP:PL 0/0:47:70:47:0,70,1056 +chrX 3950053 . AT A, 53.60 . AS_QUALapprox=|61|0;AS_VarDP=23|8|0;BaseQRankSum=-0.689;DP=44;MQRankSum=0.000;QUALapprox=61;RAW_GT_COUNT=0,1,0;RAW_MQandDP=155641,44;ReadPosRankSum=0.226;VarDP=31 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,8,0:31:61:0|1:3950053_AT_A:61,0,427,129,450,579:3950053:15,8,5,3 +chrX 3950055 . T . . END=3950090 GT:DP:GQ:MIN_DP:PL 0/0:40:48:40:0,48,953 +chrX 3950091 . G . . END=3950091 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,987 +chrX 3950092 . T . . END=3950225 GT:DP:GQ:MIN_DP:PL 0/0:41:57:41:0,57,1064 +chrX 3950226 . AT A, 78.60 . AS_QUALapprox=|86|0;AS_VarDP=17|7|0;BaseQRankSum=1.216;DP=31;MQRankSum=0.733;QUALapprox=86;RAW_GT_COUNT=0,1,0;RAW_MQandDP=108576,31;ReadPosRankSum=0.095;VarDP=24 GT:AD:DP:GQ:PL:SB 0/1:17,7,0:24:86:86,0,295,136,315,452:8,9,5,2 +chrX 3950228 . T . . END=3950244 GT:DP:GQ:MIN_DP:PL 0/0:44:60:44:0,60,1080 +chrX 3950245 . G . . END=3950245 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,848 +chrX 3950246 . T . . END=3951066 GT:DP:GQ:MIN_DP:PL 0/0:55:69:55:0,69,1032 +chrX 3951067 . T A, 767.64 . AS_QUALapprox=|775|0;AS_VarDP=22|29|0;BaseQRankSum=-1.983;DP=51;MQRankSum=0.000;QUALapprox=775;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=1.103;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:22,29,0:51:99:775,0,584,841,671,1512:7,15,17,12 +chrX 3951068 . T . . END=3951467 GT:DP:GQ:MIN_DP:PL 0/0:55:95:55:0,95,1419 +chrX 3951468 . AT A,ATTT, 511.60 . AS_QUALapprox=|519|0|0;AS_VarDP=23|24|2|0;BaseQRankSum=1.572;DP=58;MQRankSum=0.000;QUALapprox=519;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=0.712;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:23,24,2,0:49:99:519,0,573,640,584,1693,654,639,1510,1479:13,10,14,12 +chrX 3951470 . T . . END=3952377 GT:DP:GQ:MIN_DP:PL 0/0:58:92:58:0,92,1195 +chrX 3952378 . T C, 2223.06 . AS_QUALapprox=|2237|0;AS_VarDP=0|70|0;DP=71;QUALapprox=2237;RAW_GT_COUNT=0,0,1;RAW_MQandDP=255600,71;VarDP=70 GT:AD:DP:GQ:PL:SB 1/1:0,70,0:70:99:2237,210,0,2237,210,2237:0,0,40,30 +chrX 3952379 . G . . END=3954157 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,101,1191 +chrX 3954158 . G GA, 425.60 . AS_QUALapprox=|433|0;AS_VarDP=25|20|0;BaseQRankSum=0.781;DP=50;MQRankSum=0.000;QUALapprox=433;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=0.902;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:25,20,0:45:99:433,0,580,508,640,1149:15,10,6,14 +chrX 3954159 . A . . END=3955108 GT:DP:GQ:MIN_DP:PL 0/0:59:49:59:0,49,1156 +chrX 3955109 . C . . END=3955109 GT:DP:GQ:MIN_DP:PL 0/0:37:12:37:0,12,998 +chrX 3955110 . G . . END=3955112 GT:DP:GQ:MIN_DP:PL 0/0:44:23:37:0,23,1107 +chrX 3955113 . T . . END=3955113 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,1181 +chrX 3955114 . C CA,CAAA, 316.60 . AS_QUALapprox=|324|217|0;AS_VarDP=9|10|5|0;BaseQRankSum=0.937;DP=53;MQRankSum=-1.057;QUALapprox=324;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187092,53;ReadPosRankSum=-1.045;VarDP=24 GT:AD:DP:GQ:PL:SB 0/1:9,10,5,0:24:64:324,0,89,107,64,466,291,172,409,534:7,2,11,4 +chrX 3955115 . A . . END=3955319 GT:DP:GQ:MIN_DP:PL 0/0:63:89:63:0,89,1325 +chrX 3955320 . A AAAAT, 877.60 . AS_QUALapprox=|885|0;AS_VarDP=23|23|0;BaseQRankSum=0.320;DP=64;MQRankSum=0.000;QUALapprox=885;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=0.209;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:23,23,0:46:99:885,0,852,955,921,1876:13,10,12,11 +chrX 3955321 . A . . END=3957571 GT:DP:GQ:MIN_DP:PL 0/0:56:66:56:0,66,1171 +chrX 3957572 . CCG C, 1344.60 . AS_QUALapprox=|1352|0;AS_VarDP=25|34|0;BaseQRankSum=-2.183;DP=63;MQRankSum=0.000;QUALapprox=1352;RAW_GT_COUNT=0,1,0;RAW_MQandDP=224569,63;ReadPosRankSum=-1.596;VarDP=59 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,34,0:59:99:0|1:3957572_CCG_C:1352,0,937,1428,1039,2467:3957572:11,14,19,15 +chrX 3957575 . T TTC, 1344.60 . AS_QUALapprox=|1352|0;AS_VarDP=25|34|0;BaseQRankSum=-1.135;DP=62;MQRankSum=0.000;QUALapprox=1352;RAW_GT_COUNT=0,1,0;RAW_MQandDP=220969,62;ReadPosRankSum=-1.443;VarDP=59 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,34,0:59:99:0|1:3957572_CCG_C:1352,0,937,1428,1039,2467:3957572:11,14,19,15 +chrX 3957576 . C . . END=3958240 GT:DP:GQ:MIN_DP:PL 0/0:53:59:53:0,59,1031 +chrX 3958241 . TTGTG T,TTGTGTGTGTG, 419.60 . AS_QUALapprox=|427|0|0;AS_VarDP=18|12|0|0;BaseQRankSum=0.065;DP=49;MQRankSum=-0.294;QUALapprox=427;RAW_GT_COUNT=0,1,0;RAW_MQandDP=173172,49;ReadPosRankSum=0.996;VarDP=30 GT:AD:DP:GQ:PL:SB 0/1:18,12,0,0:30:99:427,0,779,476,697,1162,485,762,1177,1233:8,10,9,3 +chrX 3958246 . T . . END=3958302 GT:DP:GQ:MIN_DP:PL 0/0:47:59:43:0,59,1075 +chrX 3958303 . A G, 797.64 . AS_QUALapprox=|805|0;AS_VarDP=19|33|0;BaseQRankSum=-1.186;DP=52;MQRankSum=0.000;QUALapprox=805;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=0.732;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:19,33,0:52:99:805,0,476,863,572,1435:9,10,19,14 +chrX 3958304 . T . . END=3958523 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 3958524 . T C, 577.64 . AS_QUALapprox=|585|0;AS_VarDP=31|24|0;BaseQRankSum=-1.630;DP=55;MQRankSum=0.000;QUALapprox=585;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=1.468;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:31,24,0:55:99:585,0,837,677,909,1586:15,16,11,13 +chrX 3958525 . G . . END=3959268 GT:DP:GQ:MIN_DP:PL 0/0:55:71:55:0,71,1272 +chrX 3959269 . T C, 701.64 . AS_QUALapprox=|709|0;AS_VarDP=26|27|0;BaseQRankSum=-1.022;DP=60;MQRankSum=0.000;QUALapprox=709;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=0.792;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:26,27,0:53:99:709,0,705,787,786,1573:14,12,19,8 +chrX 3959270 . A . . END=3960038 GT:DP:GQ:MIN_DP:PL 0/0:54:79:54:0,79,1234 +chrX 3960039 . G GT, 876.60 . AS_QUALapprox=|884|0;AS_VarDP=26|28|0;BaseQRankSum=-1.798;DP=55;MQRankSum=0.000;QUALapprox=884;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-0.165;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:26,28,0:54:99:884,0,807,962,891,1853:20,6,17,11 +chrX 3960040 . T . . END=3960416 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,112,1800 +chrX 3960417 . C CT, 474.60 . AS_QUALapprox=|482|0;AS_VarDP=29|24|0;BaseQRankSum=2.090;DP=59;MQRankSum=0.000;QUALapprox=482;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=1.368;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:29,24,0:53:99:482,0,633,569,705,1274:16,13,14,10 +chrX 3960418 . T . . END=3961514 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,99,1252 +chrX 3961515 . A T, 617.64 . AS_QUALapprox=|625|0;AS_VarDP=27|24|0;BaseQRankSum=0.114;DP=55;MQRankSum=0.000;QUALapprox=625;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-2.312;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:27,24,0:51:99:625,0,736,706,807,1513:10,17,13,11 +chrX 3961516 . A . . END=3961601 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,104,1493 +chrX 3961602 . A AACATACT, 897.60 . AS_QUALapprox=|905|0;AS_VarDP=20|23|0;BaseQRankSum=-1.771;DP=49;MQRankSum=0.000;QUALapprox=905;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=0.475;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:20,23,0:43:99:905,0,771,966,840,1806:10,10,12,11 +chrX 3961603 . A . . END=3961643 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,103,1320 +chrX 3961644 . G A, 576.64 . AS_QUALapprox=|584|0;AS_VarDP=27|23|0;BaseQRankSum=-0.671;DP=50;MQRankSum=0.000;QUALapprox=584;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=-1.957;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:27,23,0:50:99:584,0,749,666,817,1483:16,11,9,14 +chrX 3961645 . T . . END=3962139 GT:DP:GQ:MIN_DP:PL 0/0:49:37:47:0,37,1162 +chrX 3962140 . A AATAAACTT, 1003.60 . AS_QUALapprox=|1011|0;AS_VarDP=25|26|0;BaseQRankSum=-0.898;DP=52;MQRankSum=0.000;QUALapprox=1011;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=0.556;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:25,26,0:51:99:1011,0,958,1086,1037,2123:11,14,16,10 +chrX 3962141 . A . . END=3962787 GT:DP:GQ:MIN_DP:PL 0/0:57:67:57:0,67,1455 +chrX 3962788 . G GA, 324.60 . AS_QUALapprox=|332|0;AS_VarDP=22|16|0;BaseQRankSum=0.303;DP=55;MQRankSum=1.260;QUALapprox=332;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187614,55;ReadPosRankSum=0.547;VarDP=38 GT:AD:DP:GQ:PL:SB 0/1:22,16,0:38:99:332,0,532,399,580,979:6,16,7,9 +chrX 3962789 . A . . END=3963323 GT:DP:GQ:MIN_DP:PL 0/0:49:56:49:0,56,1162 +chrX 3963324 . G C, 769.64 . AS_QUALapprox=|777|0;AS_VarDP=19|28|0;BaseQRankSum=-1.680;DP=49;MQRankSum=0.000;QUALapprox=777;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=0.932;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:19,28,0:47:99:777,0,520,834,603,1438:9,10,15,13 +chrX 3963325 . C . . END=3963352 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 3963353 . A T, 799.64 . AS_QUALapprox=|807|0;AS_VarDP=27|30|0;BaseQRankSum=-0.623;DP=59;MQRankSum=0.000;QUALapprox=807;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=0.632;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:27,30,0:57:99:807,0,738,888,827,1715:12,15,15,15 +chrX 3963354 . T . . END=3963464 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 3963465 . G A, 451.64 . AS_QUALapprox=|459|0;AS_VarDP=27|17|0;BaseQRankSum=2.282;DP=46;MQRankSum=0.000;QUALapprox=459;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=2.183;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:27,17,0:44:99:459,0,736,540,787,1327:11,16,6,11 +chrX 3963466 . A . . END=3963555 GT:DP:GQ:MIN_DP:PL 0/0:39:34:36:0,34,997 +chrX 3963556 . CT C,CTT, 143.60 . AS_QUALapprox=|0|151|0;AS_VarDP=16|2|10|0;BaseQRankSum=-1.344;DP=38;MQRankSum=0.000;QUALapprox=151;RAW_GT_COUNT=0,1,0;RAW_MQandDP=136800,38;ReadPosRankSum=0.987;VarDP=28 GT:AD:DP:GQ:PL:SB 0/2:16,2,10,0:28:99:151,185,646,0,303,330,227,600,361,631:5,11,4,8 +chrX 3963558 . T . . END=3963593 GT:DP:GQ:MIN_DP:PL 0/0:32:52:32:0,52,868 +chrX 3963594 . A C, 166.64 . AS_QUALapprox=|174|0;AS_VarDP=20|8|0;BaseQRankSum=-0.964;DP=30;MQRankSum=0.000;QUALapprox=174;RAW_GT_COUNT=0,1,0;RAW_MQandDP=108000,30;ReadPosRankSum=1.451;VarDP=28 GT:AD:DP:GQ:PL:SB 0/1:20,8,0:28:99:174,0,591,234,615,849:8,12,0,8 +chrX 3963595 . T . . END=3963902 GT:DP:GQ:MIN_DP:PL 0/0:42:53:42:0,53,963 +chrX 3963903 . G C, 747.64 . AS_QUALapprox=|755|0;AS_VarDP=19|29|0;BaseQRankSum=-0.081;DP=49;MQRankSum=0.000;QUALapprox=755;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=-0.443;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:19,29,0:48:99:755,0,452,811,539,1350:10,9,16,13 +chrX 3963904 . T . . END=3964392 GT:DP:GQ:MIN_DP:PL 0/0:51:67:51:0,67,1311 +chrX 3964393 . T C, 691.64 . AS_QUALapprox=|699|0;AS_VarDP=22|28|0;BaseQRankSum=-0.248;DP=50;MQRankSum=0.000;QUALapprox=699;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=1.026;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:22,28,0:50:99:699,0,576,765,658,1424:13,9,13,15 +chrX 3964394 . A . . END=3965316 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,100,1242 +chrX 3965317 . C G, 752.64 . AS_QUALapprox=|760|0;AS_VarDP=16|27|0;BaseQRankSum=1.615;DP=45;MQRankSum=0.000;QUALapprox=760;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=0.716;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:16,27,0:43:99:760,0,362,808,443,1251:12,4,17,10 +chrX 3965318 . G . . END=3966816 GT:DP:GQ:MIN_DP:PL 0/0:22:39:18:0,39,506 +chrX 3966817 . T . . END=3966817 GT:DP:GQ:MIN_DP:PL 0/0:20:0:20:0,0,477 +chrX 3966818 . C . . END=3966835 GT:DP:GQ:MIN_DP:PL 0/0:16:27:13:0,27,285 +chrX 3966836 . A . . END=3966836 GT:DP:GQ:MIN_DP:PL 0/0:15:10:15:0,10,411 +chrX 3966837 . C . . END=3966899 GT:DP:GQ:MIN_DP:PL 0/0:19:37:15:0,37,411 +chrX 3966900 . A . . END=3966900 GT:DP:GQ:MIN_DP:PL 0/0:21:9:21:0,9,532 +chrX 3966901 . C . . END=3967503 GT:DP:GQ:MIN_DP:PL 0/0:18:21:11:0,21,315 +chrX 3967504 . C . . END=3967579 GT:DP:GQ:MIN_DP:PL 0/0:5:0:5:0,0,114 +chrX 3967580 . T . . END=3967580 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,315 +chrX 3967581 . G . . END=3967593 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,133 +chrX 3967594 . G . . END=3967597 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,213 +chrX 3967598 . C . . END=3967598 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,168 +chrX 3967599 . G . . END=3967600 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,203 +chrX 3967601 . A . . END=3967601 GT:DP:GQ:MIN_DP:PL 0/0:7:6:7:0,6,153 +chrX 3967602 . A . . END=3967606 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,193 +chrX 3967607 . T . . END=3967607 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,209 +chrX 3967608 . C . . END=3967608 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,213 +chrX 3967609 . T . . END=3967609 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,209 +chrX 3967610 . C . . END=3967613 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,203 +chrX 3967614 . T . . END=3967614 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,209 +chrX 3967615 . G . . END=3967615 GT:DP:GQ:MIN_DP:PL 0/0:8:24:8:0,24,268 +chrX 3967616 . T . . END=3967616 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,209 +chrX 3967617 . T . . END=3967632 GT:DP:GQ:MIN_DP:PL 0/0:9:24:9:0,24,238 +chrX 3967633 . A T, 18.64 . AS_QUALapprox=|26|0;AS_VarDP=6|2|0;BaseQRankSum=-0.854;DP=9;MQRankSum=0.992;QUALapprox=26;RAW_GT_COUNT=0,1,0;RAW_MQandDP=11259,9;ReadPosRankSum=-0.319;VarDP=8 GT:AD:DP:GQ:PL:SB 0/1:6,2,0:8:26:26,0,123,43,129,172:1,5,0,2 +chrX 3967634 . C . . END=3967662 GT:DP:GQ:MIN_DP:PL 0/0:10:24:9:0,24,268 +chrX 3967663 . A . . END=3967664 GT:DP:GQ:MIN_DP:PL 0/0:12:11:12:0,11,348 +chrX 3967665 . G . . END=3967685 GT:DP:GQ:MIN_DP:PL 0/0:12:33:12:0,33,382 +chrX 3967686 . C . . END=3967686 GT:DP:GQ:MIN_DP:PL 0/0:14:17:14:0,17,417 +chrX 3967687 . C . . END=3967788 GT:DP:GQ:MIN_DP:PL 0/0:15:20:10:0,20,303 +chrX 3967789 . A . . END=3967789 GT:DP:GQ:MIN_DP:PL 0/0:10:5:10:0,5,268 +chrX 3967790 . G . . END=3967809 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,315 +chrX 3967810 . C . . END=3967888 GT:DP:GQ:MIN_DP:PL 0/0:5:0:5:0,0,70 +chrX 3967889 . A . . END=3967902 GT:DP:GQ:MIN_DP:PL 0/0:11:21:9:0,21,223 +chrX 3967903 . T . . END=3967903 GT:DP:GQ:MIN_DP:PL 0/0:12:11:12:0,11,358 +chrX 3967904 . T . . END=3968028 GT:DP:GQ:MIN_DP:PL 0/0:13:21:10:0,21,315 +chrX 3968029 . T . . END=3968176 GT:DP:GQ:MIN_DP:PL 0/0:4:0:4:0,0,49 +chrX 3968177 . T . . END=3968178 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,223 +chrX 3968179 . A . . END=3968179 GT:DP:GQ:MIN_DP:PL 0/0:8:10:8:0,10,229 +chrX 3968180 . A . . END=3968180 GT:DP:GQ:MIN_DP:PL 0/0:8:24:8:0,24,278 +chrX 3968181 . C . . END=3968181 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,199 +chrX 3968182 . T . . END=3968184 GT:DP:GQ:MIN_DP:PL 0/0:8:24:8:0,24,248 +chrX 3968185 . A . . END=3968185 GT:DP:GQ:MIN_DP:PL 0/0:10:16:10:0,16,299 +chrX 3968186 . A . . END=3968198 GT:DP:GQ:MIN_DP:PL 0/0:12:22:11:0,22,338 +chrX 3968199 . C . . END=3968199 GT:DP:GQ:MIN_DP:PL 0/0:13:14:13:0,14,372 +chrX 3968200 . A . . END=3969775 GT:DP:GQ:MIN_DP:PL 0/0:17:36:12:0,36,407 +chrX 3969776 . G T, 1013.64 . AS_QUALapprox=|1021|0;AS_VarDP=36|37|0;BaseQRankSum=1.462;DP=73;MQRankSum=0.000;QUALapprox=1021;RAW_GT_COUNT=0,1,0;RAW_MQandDP=262800,73;ReadPosRankSum=0.353;VarDP=73 GT:AD:DP:GQ:PL:SB 0/1:36,37,0:73:99:1021,0,917,1129,1028,2157:22,14,21,16 +chrX 3969777 . A . . END=3971090 GT:DP:GQ:MIN_DP:PL 0/0:54:95:54:0,95,1435 +chrX 3971091 . G A, 551.64 . AS_QUALapprox=|559|0;AS_VarDP=37|22|0;BaseQRankSum=2.050;DP=63;MQRankSum=0.000;QUALapprox=559;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=-0.549;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:37,22,0:59:99:559,0,923,669,989,1657:13,24,8,14 +chrX 3971092 . G . . END=3971803 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,106,1346 +chrX 3971804 . C T, 571.64 . AS_QUALapprox=|579|0;AS_VarDP=33|22|0;BaseQRankSum=1.427;DP=59;MQRankSum=0.653;QUALapprox=579;RAW_GT_COUNT=0,1,0;RAW_MQandDP=203805,59;ReadPosRankSum=0.232;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:33,22,0:55:99:579,0,902,679,968,1646:16,17,15,7 +chrX 3971805 . C . . END=3972812 GT:DP:GQ:MIN_DP:PL 0/0:59:94:59:0,94,1469 +chrX 3972813 . G T, 593.64 . AS_QUALapprox=|601|0;AS_VarDP=36|23|0;BaseQRankSum=1.123;DP=61;MQRankSum=0.000;QUALapprox=601;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-0.987;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:36,23,0:59:99:601,0,1004,709,1073,1782:19,17,6,17 +chrX 3972814 . G . . END=3973901 GT:DP:GQ:MIN_DP:PL 0/0:51:74:51:0,74,1152 +chrX 3973902 . G C, 895.64 . AS_QUALapprox=|903|0;AS_VarDP=21|23|0;BaseQRankSum=-1.282;DP=45;MQRankSum=-1.955;QUALapprox=903;RAW_GT_COUNT=0,1,0;RAW_MQandDP=157151,45;ReadPosRankSum=2.292;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,23,0:44:99:0|1:3973902_G_C:903,0,802,966,871,1837:3973902:12,9,8,15 +chrX 3973903 . T . . END=3973903 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,120,1800 +chrX 3973904 . C G, 895.64 . AS_QUALapprox=|903|0;AS_VarDP=21|23|0;BaseQRankSum=-1.195;DP=46;MQRankSum=-1.955;QUALapprox=903;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162235,46;ReadPosRankSum=2.339;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,23,0:44:99:0|1:3973902_G_C:903,0,802,966,871,1837:3973902:12,9,8,15 +chrX 3973905 . A . . END=3974057 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,104,1301 +chrX 3974058 . G A, 705.64 . AS_QUALapprox=|713|0;AS_VarDP=24|28|0;BaseQRankSum=-1.462;DP=54;MQRankSum=0.000;QUALapprox=713;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=0.863;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:24,28,0:52:99:713,0,619,784,703,1487:10,14,15,13 +chrX 3974059 . C . . END=3975229 GT:DP:GQ:MIN_DP:PL 0/0:54:63:54:0,63,896 +chrX 3975230 . G A, 718.64 . AS_QUALapprox=|726|0;AS_VarDP=34|27|0;BaseQRankSum=1.284;DP=64;MQRankSum=0.000;QUALapprox=726;RAW_GT_COUNT=0,1,0;RAW_MQandDP=229009,64;ReadPosRankSum=1.191;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:34,27,0:61:99:726,0,904,827,985,1812:15,19,14,13 +chrX 3975231 . A . . END=3977028 GT:DP:GQ:MIN_DP:PL 0/0:58:91:58:0,91,1396 +chrX 3977029 . T C, 974.64 . AS_QUALapprox=|982|0;AS_VarDP=27|36|0;BaseQRankSum=-1.479;DP=65;MQRankSum=0.000;QUALapprox=982;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=0.410;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:27,36,0:63:99:982,0,714,1063,823,1886:15,12,13,23 +chrX 3977030 . G . . END=3977961 GT:DP:GQ:MIN_DP:PL 0/0:63:94:63:0,94,1523 +chrX 3977962 . C T, 539.64 . AS_QUALapprox=|547|0;AS_VarDP=23|21|0;BaseQRankSum=-1.838;DP=48;MQRankSum=0.000;QUALapprox=547;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=1.222;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:23,21,0:44:99:547,0,657,617,720,1336:12,11,8,13 +chrX 3977963 . A . . END=3978817 GT:DP:GQ:MIN_DP:PL 0/0:56:89:56:0,89,1449 +chrX 3978818 . T TTTTCTTTCTTTC, 604.60 . AS_QUALapprox=|612|0;AS_VarDP=11|16|0;BaseQRankSum=-0.697;DP=53;MQRankSum=-0.754;QUALapprox=612;RAW_GT_COUNT=0,1,0;RAW_MQandDP=189904,53;ReadPosRankSum=-0.519;VarDP=27 GT:AD:DP:GQ:PL:SB 0/1:11,16,0:27:99:612,0,389,647,437,1084:4,7,3,13 +chrX 3978819 . T . . END=3978866 GT:DP:GQ:MIN_DP:PL 0/0:42:63:42:0,63,619 +chrX 3978867 . C CCTTT, 349.60 . AS_QUALapprox=|357|0;AS_VarDP=7|9|0;BaseQRankSum=1.009;DP=30;MQRankSum=0.776;QUALapprox=357;RAW_GT_COUNT=0,1,0;RAW_MQandDP=104948,30;ReadPosRankSum=-0.310;VarDP=16 GT:AD:DP:GQ:PL:SB 0/1:7,9,0:16:99:357,0,267,378,294,672:2,5,1,8 +chrX 3978868 . C . . END=3978949 GT:DP:GQ:MIN_DP:PL 0/0:29:51:29:0,51,765 +chrX 3978950 . CTTCTTTCTTT C, 438.60 . AS_QUALapprox=|446|0;AS_VarDP=16|12|0;BaseQRankSum=-0.523;DP=36;MQRankSum=0.000;QUALapprox=446;RAW_GT_COUNT=0,1,0;RAW_MQandDP=127444,36;ReadPosRankSum=1.827;VarDP=28 GT:AD:DP:GQ:PL:SB 0/1:16,12,0:28:99:446,0,579,494,615,1110:7,9,6,6 +chrX 3978961 . T . . END=3980078 GT:DP:GQ:MIN_DP:PL 0/0:57:42:57:0,42,1028 +chrX 3980079 . G A, 764.64 . AS_QUALapprox=|772|0;AS_VarDP=25|28|0;BaseQRankSum=-0.698;DP=55;MQRankSum=0.000;QUALapprox=772;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-0.027;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:25,28,0:53:99:772,0,687,847,771,1618:10,15,11,17 +chrX 3980080 . A . . END=3980603 GT:DP:GQ:MIN_DP:PL 0/0:53:88:53:0,88,1281 +chrX 3980604 . A T, 1245.64 . AS_QUALapprox=|1253|0;AS_VarDP=25|33|0;BaseQRankSum=0.069;DP=65;MQRankSum=0.000;QUALapprox=1253;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=-0.243;VarDP=58 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,33,0:58:99:0|1:3980604_A_T:1253,0,896,1328,995,2323:3980604:9,16,20,13 +chrX 3980605 . A T, 1245.64 . AS_QUALapprox=|1253|0;AS_VarDP=25|33|0;BaseQRankSum=0.141;DP=66;MQRankSum=0.000;QUALapprox=1253;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=-0.501;VarDP=58 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,33,0:58:99:0|1:3980604_A_T:1253,0,896,1328,995,2323:3980604:9,16,20,13 +chrX 3980606 . A . . END=3981497 GT:DP:GQ:MIN_DP:PL 0/0:58:93:58:0,93,1419 +chrX 3981498 . AT A, 88.60 . AS_QUALapprox=|96|0;AS_VarDP=20|9|0;BaseQRankSum=0.000;DP=52;MQRankSum=0.000;QUALapprox=96;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183200,52;ReadPosRankSum=1.030;VarDP=29 GT:AD:DP:GQ:PL:SB 0/1:20,9,0:29:96:96,0,300,155,327,482:8,12,3,6 +chrX 3981500 . T . . END=3982431 GT:DP:GQ:MIN_DP:PL 0/0:53:85:53:0,85,1146 +chrX 3982432 . G A, 703.64 . AS_QUALapprox=|711|0;AS_VarDP=33|28|0;BaseQRankSum=-0.326;DP=62;MQRankSum=0.000;QUALapprox=711;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=-0.753;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:33,28,0:61:99:711,0,900,810,983,1793:14,19,13,15 +chrX 3982433 . C . . END=3985617 GT:DP:GQ:MIN_DP:PL 0/0:56:83:56:0,83,1186 +chrX 3985618 . G A, 849.64 . AS_QUALapprox=|857|0;AS_VarDP=26|31|0;BaseQRankSum=0.659;DP=58;MQRankSum=0.000;QUALapprox=857;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=1.258;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:26,31,0:57:99:857,0,692,935,785,1720:12,14,18,13 +chrX 3985619 . G . . END=3986367 GT:DP:GQ:MIN_DP:PL 0/0:58:82:58:0,82,1478 +chrX 3986368 . T A, 767.64 . AS_QUALapprox=|775|0;AS_VarDP=24|27|0;BaseQRankSum=2.200;DP=56;MQRankSum=0.000;QUALapprox=775;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=0.453;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:24,27,0:51:99:775,0,621,847,702,1549:11,13,12,15 +chrX 3986369 . G . . END=3987608 GT:DP:GQ:MIN_DP:PL 0/0:56:80:56:0,80,1087 +chrX 3987609 . G A, 659.64 . AS_QUALapprox=|667|0;AS_VarDP=24|25|0;BaseQRankSum=-1.353;DP=51;MQRankSum=0.000;QUALapprox=667;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-1.950;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:24,25,0:49:99:667,0,675,739,750,1489:9,15,12,13 +chrX 3987610 . A . . END=3987624 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,99,1356 +chrX 3987625 . A AT, 312.60 . AS_QUALapprox=|320|0;AS_VarDP=16|17|0;BaseQRankSum=-1.350;DP=43;MQRankSum=0.000;QUALapprox=320;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154800,43;ReadPosRankSum=-2.811;VarDP=33 GT:AD:DP:GQ:PL:SB 0/1:16,17,0:33:99:320,0,315,368,366,734:6,10,12,5 +chrX 3987626 . T . . END=3988506 GT:DP:GQ:MIN_DP:PL 0/0:52:80:52:0,80,1117 +chrX 3988507 . A G, 468.64 . AS_QUALapprox=|476|0;AS_VarDP=27|21|0;BaseQRankSum=-3.449;DP=49;MQRankSum=0.000;QUALapprox=476;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=-0.457;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:27,21,0:48:99:476,0,795,557,857,1415:10,17,14,7 +chrX 3988508 . T . . END=3991968 GT:DP:GQ:MIN_DP:PL 0/0:56:77:56:0,77,1211 +chrX 3991969 . T C, 649.64 . AS_QUALapprox=|657|0;AS_VarDP=43|26|0;BaseQRankSum=1.226;DP=70;MQRankSum=0.808;QUALapprox=657;RAW_GT_COUNT=0,1,0;RAW_MQandDP=250164,70;ReadPosRankSum=0.768;VarDP=69 GT:AD:DP:GQ:PL:SB 0/1:43,26,0:69:99:657,0,1152,786,1230,2016:29,14,15,11 +chrX 3991970 . T . . END=3993047 GT:DP:GQ:MIN_DP:PL 0/0:51:44:51:0,44,919 +chrX 3993048 . C T, 446.64 . AS_QUALapprox=|454|0;AS_VarDP=18|16|0;BaseQRankSum=1.396;DP=35;MQRankSum=0.000;QUALapprox=454;RAW_GT_COUNT=0,1,0;RAW_MQandDP=126000,35;ReadPosRankSum=0.000;VarDP=34 GT:AD:DP:GQ:PL:SB 0/1:18,16,0:34:99:454,0,503,508,552,1060:5,13,8,8 +chrX 3993049 . A . . END=3993154 GT:DP:GQ:MIN_DP:PL 0/0:39:81:39:0,81,1137 +chrX 3993155 . A G, 443.64 . AS_QUALapprox=|451|0;AS_VarDP=19|16|0;BaseQRankSum=0.975;DP=37;MQRankSum=0.000;QUALapprox=451;RAW_GT_COUNT=0,1,0;RAW_MQandDP=133200,37;ReadPosRankSum=1.441;VarDP=35 GT:AD:DP:GQ:PL:SB 0/1:19,16,0:35:99:451,0,545,508,593,1101:8,11,10,6 +chrX 3993156 . A . . END=3993749 GT:DP:GQ:MIN_DP:PL 0/0:49:70:49:0,70,1087 +chrX 3993750 . G T, 532.64 . AS_QUALapprox=|540|0;AS_VarDP=25|20|0;BaseQRankSum=0.601;DP=47;MQRankSum=0.000;QUALapprox=540;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=1.143;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:25,20,0:45:99:540,0,692,615,752,1367:11,14,10,10 +chrX 3993751 . G . . END=3994766 GT:DP:GQ:MIN_DP:PL 0/0:55:80:55:0,80,1305 +chrX 3994767 . A G, 560.64 . AS_QUALapprox=|568|0;AS_VarDP=32|25|0;BaseQRankSum=-3.146;DP=60;MQRankSum=0.000;QUALapprox=568;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=1.384;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:32,25,0:57:99:568,0,942,664,1015,1679:19,13,11,14 +chrX 3994768 . T . . END=3995035 GT:DP:GQ:MIN_DP:PL 0/0:35:25:33:0,25,837 +chrX 3995036 . TTATTATATTATCATATAATATAATATATTCTATATTATATTATTATATAATATAATATATTCTATATTATATTATTATATAATATAATATATTCTATATTATATTATTATATAATATAATATATTCTATATTATATTATTATATAATATAATATATTCTA T, 168.60 . AS_QUALapprox=|176|0;AS_VarDP=29|11|0;BaseQRankSum=-0.965;DP=40;MQRankSum=1.476;QUALapprox=176;RAW_GT_COUNT=0,1,0;RAW_MQandDP=129837,40;ReadPosRankSum=-0.224;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:29,11,0:40:99:176,0,910,262,938,1201:11,18,5,6 +chrX 3995197 . T . . END=3995218 GT:DP:GQ:MIN_DP:PL 0/0:6:15:6:0,15,164 +chrX 3995219 . A . . END=3995227 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,202 +chrX 3995228 . A . . END=3995228 GT:DP:GQ:MIN_DP:PL 0/0:9:2:9:0,2,243 +chrX 3995229 . T . . END=3995234 GT:DP:GQ:MIN_DP:PL 0/0:10:30:10:0,30,307 +chrX 3995235 . A . . END=3995235 GT:DP:GQ:MIN_DP:PL 0/0:11:18:11:0,18,303 +chrX 3995236 . T . . END=3995257 GT:DP:GQ:MIN_DP:PL 0/0:12:21:12:0,21,328 +chrX 3995258 . C . . END=3995258 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,233 +chrX 3995259 . T . . END=3995284 GT:DP:GQ:MIN_DP:PL 0/0:15:28:13:0,28,387 +chrX 3995285 . C . . END=3995285 GT:DP:GQ:MIN_DP:PL 0/0:12:11:12:0,11,327 +chrX 3995286 . T . . END=3995339 GT:DP:GQ:MIN_DP:PL 0/0:15:27:9:0,27,303 +chrX 3995340 . T . . END=3995345 GT:DP:GQ:MIN_DP:PL 0/0:13:0:13:0,0,243 +chrX 3995346 . A . . END=3995355 GT:DP:GQ:MIN_DP:PL 0/0:15:39:14:0,39,467 +chrX 3995356 . A . . END=3995356 GT:DP:GQ:MIN_DP:PL 0/0:14:17:14:0,17,407 +chrX 3995357 . T . . END=3995360 GT:DP:GQ:MIN_DP:PL 0/0:15:36:15:0,36,540 +chrX 3995361 . A . . END=3995361 GT:DP:GQ:MIN_DP:PL 0/0:16:13:16:0,13,446 +chrX 3995362 . T . . END=3995364 GT:DP:GQ:MIN_DP:PL 0/0:17:39:16:0,39,585 +chrX 3995365 . T . . END=3995366 GT:DP:GQ:MIN_DP:PL 0/0:18:16:18:0,16,511 +chrX 3995367 . T . . END=3995383 GT:DP:GQ:MIN_DP:PL 0/0:16:39:15:0,39,585 +chrX 3995384 . T . . END=3995384 GT:DP:GQ:MIN_DP:PL 0/0:15:0:15:0,0,104 +chrX 3995385 . A . . END=3995387 GT:DP:GQ:MIN_DP:PL 0/0:15:39:15:0,39,585 +chrX 3995388 . C . . END=3995388 GT:DP:GQ:MIN_DP:PL 0/0:13:14:13:0,14,392 +chrX 3995389 . T . . END=3995393 GT:DP:GQ:MIN_DP:PL 0/0:14:39:14:0,39,442 +chrX 3995394 . T . . END=3995394 GT:DP:GQ:MIN_DP:PL 0/0:13:4:13:0,4,382 +chrX 3995395 . A . . END=3995409 GT:DP:GQ:MIN_DP:PL 0/0:13:33:13:0,33,421 +chrX 3995410 . C . . END=3995414 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,417 +chrX 3995415 . T . . END=3995459 GT:DP:GQ:MIN_DP:PL 0/0:19:20:17:0,20,451 +chrX 3995460 . T . . END=3995464 GT:DP:GQ:MIN_DP:PL 0/0:23:0:23:0,0,267 +chrX 3995465 . T . . END=3995485 GT:DP:GQ:MIN_DP:PL 0/0:23:34:23:0,34,639 +chrX 3995486 . C . . END=3995486 GT:DP:GQ:MIN_DP:PL 0/0:25:0:25:0,0,571 +chrX 3995487 . T . . END=3995558 GT:DP:GQ:MIN_DP:PL 0/0:25:34:24:0,34,639 +chrX 3995559 . A . . END=3995559 GT:DP:GQ:MIN_DP:PL 0/0:25:6:25:0,6,650 +chrX 3995560 . T . . END=3995585 GT:DP:GQ:MIN_DP:PL 0/0:26:39:26:0,39,694 +chrX 3995586 . A . . END=3995586 GT:DP:GQ:MIN_DP:PL 0/0:27:11:27:0,11,658 +chrX 3995587 . T . . END=3995588 GT:DP:GQ:MIN_DP:PL 0/0:27:46:27:0,46,768 +chrX 3995589 . C . . END=3995589 GT:DP:GQ:MIN_DP:PL 0/0:23:0:23:0,0,500 +chrX 3995590 . T . . END=3995650 GT:DP:GQ:MIN_DP:PL 0/0:18:27:11:0,27,387 +chrX 3995651 . T . . END=3995651 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,313 +chrX 3995652 . A . . END=3995654 GT:DP:GQ:MIN_DP:PL 0/0:12:27:11:0,27,405 +chrX 3995655 . C . . END=3995655 GT:DP:GQ:MIN_DP:PL 0/0:11:8:11:0,8,282 +chrX 3995656 . T . . END=3995680 GT:DP:GQ:MIN_DP:PL 0/0:14:20:11:0,20,287 +chrX 3995681 . A . . END=3995681 GT:DP:GQ:MIN_DP:PL 0/0:14:17:14:0,17,366 +chrX 3995682 . T . . END=3995685 GT:DP:GQ:MIN_DP:PL 0/0:14:30:14:0,30,450 +chrX 3995686 . T . . END=3995686 GT:DP:GQ:MIN_DP:PL 0/0:13:0:13:0,0,313 +chrX 3995687 . A . . END=3995687 GT:DP:GQ:MIN_DP:PL 0/0:12:33:12:0,33,495 +chrX 3995688 . T . . END=3995688 GT:DP:GQ:MIN_DP:PL 0/0:11:19:11:0,19,333 +chrX 3995689 . A . . END=3995765 GT:DP:GQ:MIN_DP:PL 0/0:18:21:11:0,21,287 +chrX 3995766 . G . . END=3995766 GT:DP:GQ:MIN_DP:PL 0/0:18:0:18:0,0,229 +chrX 3995767 . A . . END=3995777 GT:DP:GQ:MIN_DP:PL 0/0:19:42:19:0,42,540 +chrX 3995778 . C . . END=3995778 GT:DP:GQ:MIN_DP:PL 0/0:17:0:17:0,0,273 +chrX 3995779 . T . . END=3995779 GT:DP:GQ:MIN_DP:PL 0/0:18:48:18:0,48,720 +chrX 3995780 . G . . END=3995780 GT:DP:GQ:MIN_DP:PL 0/0:15:10:15:0,10,391 +chrX 3995781 . T . . END=3995783 GT:DP:GQ:MIN_DP:PL 0/0:17:48:17:0,48,720 +chrX 3995784 . C . . END=3995784 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,397 +chrX 3995785 . A . . END=3995788 GT:DP:GQ:MIN_DP:PL 0/0:19:22:17:0,22,501 +chrX 3995789 . A . . END=3995789 GT:DP:GQ:MIN_DP:PL 0/0:19:8:19:0,8,512 +chrX 3995790 . T . . END=3995791 GT:DP:GQ:MIN_DP:PL 0/0:21:25:20:0,25,575 +chrX 3995792 . C . . END=3995792 GT:DP:GQ:MIN_DP:PL 0/0:20:10:20:0,10,485 +chrX 3995793 . T . . END=3995851 GT:DP:GQ:MIN_DP:PL 0/0:21:25:20:0,25,555 +chrX 3995852 . C . . END=3995852 GT:DP:GQ:MIN_DP:PL 0/0:22:0:22:0,0,377 +chrX 3995853 . T . . END=3995878 GT:DP:GQ:MIN_DP:PL 0/0:27:43:27:0,43,720 +chrX 3995879 . C . . END=3995879 GT:DP:GQ:MIN_DP:PL 0/0:23:19:23:0,19,600 +chrX 3995880 . T . . END=3995880 GT:DP:GQ:MIN_DP:PL 0/0:26:78:26:0,78,793 +chrX 3995881 . A . . END=3995881 GT:DP:GQ:MIN_DP:PL 0/0:24:0:24:0,0,437 +chrX 3995882 . T . . END=3995895 GT:DP:GQ:MIN_DP:PL 0/0:27:72:27:0,72,1080 +chrX 3995896 . A . . END=3995896 GT:DP:GQ:MIN_DP:PL 0/0:22:17:22:0,17,595 +chrX 3995897 . T . . END=3995909 GT:DP:GQ:MIN_DP:PL 0/0:25:47:25:0,47,680 +chrX 3995910 . A . . END=3995910 GT:DP:GQ:MIN_DP:PL 0/0:26:9:26:0,9,664 +chrX 3995911 . T . . END=3995924 GT:DP:GQ:MIN_DP:PL 0/0:27:46:27:0,46,738 +chrX 3995925 . A . . END=3995925 GT:DP:GQ:MIN_DP:PL 0/0:22:0:22:0,0,436 +chrX 3995926 . T . . END=3995950 GT:DP:GQ:MIN_DP:PL 0/0:24:23:23:0,23,575 +chrX 3995951 . T . . END=3995951 GT:DP:GQ:MIN_DP:PL 0/0:17:16:17:0,16,441 +chrX 3995952 . A . . END=3995953 GT:DP:GQ:MIN_DP:PL 0/0:18:51:18:0,51,765 +chrX 3995954 . A . . END=3995954 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,267 +chrX 3995955 . T . . END=3995979 GT:DP:GQ:MIN_DP:PL 0/0:16:30:11:0,30,308 +chrX 3995980 . T . . END=3995980 GT:DP:GQ:MIN_DP:PL 0/0:12:0:12:0,0,119 +chrX 3995981 . ATATAATATATATTCTATATTATAT A, 117.60 . AS_QUALapprox=|125|0;AS_VarDP=2|3|0;DP=30;MQRankSum=-1.645;QUALapprox=125;RAW_GT_COUNT=0,1,0;RAW_MQandDP=54445,30;VarDP=5 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:2,3,0:5:70:0|1:3995981_ATATAATATATATTCTATATTATAT_A:125,0,70,131,84,215:3995981:2,0,1,2 +chrX 3996006 . T . . END=3996007 GT:DP:GQ:MIN_DP:PL 0/0:9:18:9:0,18,270 +chrX 3996008 . T . . END=3996025 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,223 +chrX 3996026 . A . . END=3996047 GT:DP:GQ:MIN_DP:PL 0/0:7:12:7:0,12,180 +chrX 3996048 . C A, 106.64 . AS_QUALapprox=|114|0;AS_VarDP=4|3|0;BaseQRankSum=0.000;DP=8;MQRankSum=-1.902;QUALapprox=114;RAW_GT_COUNT=0,1,0;RAW_MQandDP=16982,8;ReadPosRankSum=-1.006;VarDP=7 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:4,3,0:7:99:0|1:3995981_ATATAATATATATTCTATATTATAT_A:114,0,137,126,147,273:3995981:4,0,1,2 +chrX 3996049 . T . . END=3996087 GT:DP:GQ:MIN_DP:PL 0/0:5:12:5:0,12,109 +chrX 3996088 . T . . END=3996100 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,203 +chrX 3996101 . C . . END=3996101 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,168 +chrX 3996102 . T . . END=3996128 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,237 +chrX 3996129 . T . . END=3996130 GT:DP:GQ:MIN_DP:PL 0/0:9:0:9:0,0,203 +chrX 3996131 . T . . END=3996139 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,315 +chrX 3996140 . T . . END=3996140 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,209 +chrX 3996141 . T . . END=3996159 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,213 +chrX 3996160 . T . . END=3996168 GT:DP:GQ:MIN_DP:PL 0/0:7:18:7:0,18,270 +chrX 3996169 . A . . END=3996182 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,243 +chrX 3996183 . C . . END=3996183 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,188 +chrX 3996184 . T . . END=3996184 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,243 +chrX 3996185 . A . . END=3996185 GT:DP:GQ:MIN_DP:PL 0/0:7:18:7:0,18,270 +chrX 3996186 . T . . END=3996191 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,315 +chrX 3996192 . A . . END=3996193 GT:DP:GQ:MIN_DP:PL 0/0:9:0:9:0,0,223 +chrX 3996194 . T . . END=3996196 GT:DP:GQ:MIN_DP:PL 0/0:10:21:10:0,21,315 +chrX 3996197 . A . . END=3996197 GT:DP:GQ:MIN_DP:PL 0/0:12:1:12:0,1,328 +chrX 3996198 . A . . END=3996206 GT:DP:GQ:MIN_DP:PL 0/0:12:27:12:0,27,405 +chrX 3996207 . C . . END=3996207 GT:DP:GQ:MIN_DP:PL 0/0:11:18:11:0,18,293 +chrX 3996208 . T . . END=3996220 GT:DP:GQ:MIN_DP:PL 0/0:13:27:11:0,27,405 +chrX 3996221 . A . . END=3996221 GT:DP:GQ:MIN_DP:PL 0/0:15:0:15:0,0,105 +chrX 3996222 . A . . END=3996256 GT:DP:GQ:MIN_DP:PL 0/0:18:42:18:0,42,486 +chrX 3996257 . T . . END=3996258 GT:DP:GQ:MIN_DP:PL 0/0:28:14:28:0,14,754 +chrX 3996259 . T . . END=3996270 GT:DP:GQ:MIN_DP:PL 0/0:31:44:31:0,44,858 +chrX 3996271 . A . . END=3996272 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,828 +chrX 3996273 . T . . END=3996278 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1106 +chrX 3996279 . T . . END=3996279 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,844 +chrX 3996280 . T . . END=3996280 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,105,1575 +chrX 3996281 . C . . END=3996281 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,737 +chrX 3996282 . T . . END=3996285 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,102,1530 +chrX 3996286 . T . . END=3996286 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,799 +chrX 3996287 . T . . END=3996291 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,102,1136 +chrX 3996292 . C CCTATATTCTATATAATATATAATATATT, 974.03 . AS_QUALapprox=|988|0;AS_VarDP=0|23|0;DP=33;QUALapprox=988;RAW_GT_COUNT=0,0,1;RAW_MQandDP=99775,33;VarDP=23 GT:AD:DP:GQ:PL:SB 1/1:0,23,0:23:67:988,67,0,991,69,993:0,0,16,7 +chrX 3996293 . C . . END=3996319 GT:DP:GQ:MIN_DP:PL 0/0:45:76:45:0,76,929 +chrX 3996320 . T . . END=3996335 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,0 +chrX 3996336 . T . . END=3996368 GT:DP:GQ:MIN_DP:PL 0/0:51:20:42:0,20,1120 +chrX 3996369 . T . . END=3996370 GT:DP:GQ:MIN_DP:PL 0/0:52:0:52:0,0,999 +chrX 3996371 . T . . END=3996377 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 3996378 . T . . END=3996384 GT:DP:GQ:MIN_DP:PL 0/0:59:0:59:0,0,634 +chrX 3996385 . T . . END=3996417 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,114,1710 +chrX 3996418 . T . . END=3996419 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,871 +chrX 3996420 . T . . END=3996444 GT:DP:GQ:MIN_DP:PL 0/0:44:40:44:0,40,905 +chrX 3996445 . T . . END=3996447 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,598 +chrX 3996448 . T . . END=3996470 GT:DP:GQ:MIN_DP:PL 0/0:34:41:34:0,41,874 +chrX 3996471 . T . . END=3996471 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,907 +chrX 3996472 . T . . END=3996476 GT:DP:GQ:MIN_DP:PL 0/0:40:57:40:0,57,1116 +chrX 3996477 . T . . END=3996478 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,919 +chrX 3996479 . T . . END=3996484 GT:DP:GQ:MIN_DP:PL 0/0:38:30:38:0,30,1032 +chrX 3996485 . C . . END=3996485 GT:DP:GQ:MIN_DP:PL 0/0:35:11:35:0,11,907 +chrX 3996486 . T . . END=3996519 GT:DP:GQ:MIN_DP:PL 0/0:34:28:31:0,28,799 +chrX 3996520 . C . . END=3996520 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,626 +chrX 3996521 . T . . END=3996533 GT:DP:GQ:MIN_DP:PL 0/0:36:64:36:0,64,1037 +chrX 3996534 . C . . END=3996534 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,734 +chrX 3996535 . T . . END=3996540 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,102,1530 +chrX 3996541 . T . . END=3996541 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,184 +chrX 3996542 . T . . END=3996551 GT:DP:GQ:MIN_DP:PL 0/0:40:34:36:0,34,962 +chrX 3996552 . A . . END=3996552 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,432 +chrX 3996553 . T . . END=3996553 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,114,1710 +chrX 3996554 . T . . END=3996555 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,457 +chrX 3996556 . T . . END=3996576 GT:DP:GQ:MIN_DP:PL 0/0:45:40:45:0,40,1134 +chrX 3996577 . T . . END=3996583 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,997 +chrX 3996584 . T . . END=3996587 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 3996588 . T . . END=3996588 GT:DP:GQ:MIN_DP:PL 0/0:52:0:52:0,0,1230 +chrX 3996589 . A . . END=3996589 GT:DP:GQ:MIN_DP:PL 0/0:52:51:52:0,51,1427 +chrX 3996590 . A . . END=3996590 GT:DP:GQ:MIN_DP:PL 0/0:50:0:50:0,0,1220 +chrX 3996591 . T . . END=3996595 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 3996596 . T . . END=3996597 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1194 +chrX 3996598 . T . . END=3996615 GT:DP:GQ:MIN_DP:PL 0/0:53:50:53:0,50,1413 +chrX 3996616 . T . . END=3996616 GT:DP:GQ:MIN_DP:PL 0/0:54:0:54:0,0,1390 +chrX 3996617 . A . . END=3996623 GT:DP:GQ:MIN_DP:PL 0/0:56:29:55:0,29,1578 +chrX 3996624 . T . . END=3996625 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1097 +chrX 3996626 . T . . END=3996629 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 3996630 . T . . END=3996630 GT:DP:GQ:MIN_DP:PL 0/0:53:0:53:0,0,968 +chrX 3996631 . A . . END=3996631 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 3996632 . T . . END=3996639 GT:DP:GQ:MIN_DP:PL 0/0:54:0:54:0,0,877 +chrX 3996640 . T . . END=3996644 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 3996645 . T . . END=3996646 GT:DP:GQ:MIN_DP:PL 0/0:55:0:55:0,0,570 +chrX 3996647 . T . . END=3996671 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 3996672 . C . . END=3996672 GT:DP:GQ:MIN_DP:PL 0/0:50:0:50:0,0,1260 +chrX 3996673 . A . . END=3996673 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,101,1670 +chrX 3996674 . T . . END=3996674 GT:DP:GQ:MIN_DP:PL 0/0:58:0:58:0,0,1568 +chrX 3996675 . T . . END=3996686 GT:DP:GQ:MIN_DP:PL 0/0:57:71:57:0,71,1562 +chrX 3996687 . T . . END=3996688 GT:DP:GQ:MIN_DP:PL 0/0:58:0:58:0,0,1366 +chrX 3996689 . T . . END=3996705 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 3996706 . G . . END=3996706 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,1115 +chrX 3996707 . T . . END=3996724 GT:DP:GQ:MIN_DP:PL 0/0:50:75:50:0,75,1390 +chrX 3996725 . G . . END=3996725 GT:DP:GQ:MIN_DP:PL 0/0:48:6:48:0,6,1211 +chrX 3996726 . T . . END=3996752 GT:DP:GQ:MIN_DP:PL 0/0:50:98:50:0,98,1474 +chrX 3996753 . G . . END=3996753 GT:DP:GQ:MIN_DP:PL 0/0:47:2:47:0,2,1275 +chrX 3996754 . T . . END=3996812 GT:DP:GQ:MIN_DP:PL 0/0:49:72:49:0,72,1143 +chrX 3996813 . T . . END=3996814 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,831 +chrX 3996815 . T . . END=3996837 GT:DP:GQ:MIN_DP:PL 0/0:40:20:37:0,20,877 +chrX 3996838 . C . . END=3996838 GT:DP:GQ:MIN_DP:PL 0/0:39:8:39:0,8,1006 +chrX 3996839 . T . . END=3996840 GT:DP:GQ:MIN_DP:PL 0/0:40:47:40:0,47,1146 +chrX 3996841 . TATC T, 53.60 . AS_QUALapprox=|61|0;AS_VarDP=26|4|0;BaseQRankSum=0.999;DP=44;MQRankSum=0.612;QUALapprox=61;RAW_GT_COUNT=0,1,0;RAW_MQandDP=153405,44;ReadPosRankSum=0.000;VarDP=30 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,4,0:30:61:0|1:3996815_T_TATTAC:61,0,1073,151,846,1147:3996815:5,7,1,1 +chrX 3996845 . A . . END=3996848 GT:DP:GQ:MIN_DP:PL 0/0:41:48:41:0,48,1116 +chrX 3996849 . A T, 53.64 . AS_QUALapprox=|61|0;AS_VarDP=26|4|0;BaseQRankSum=0.996;DP=43;MQRankSum=0.588;QUALapprox=61;RAW_GT_COUNT=0,1,0;RAW_MQandDP=150041,43;ReadPosRankSum=0.170;VarDP=30 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,4,0:30:61:0|1:3996815_T_TATTAC:61,0,1073,148,863,1147:3996815:5,8,1,1 +chrX 3996850 . A . . END=3996850 GT:DP:GQ:MIN_DP:PL 0/0:40:51:40:0,51,1161 +chrX 3996851 . TA T, 59.60 . AS_QUALapprox=|67|0;AS_VarDP=24|4|0;BaseQRankSum=1.261;DP=41;MQRankSum=0.588;QUALapprox=67;RAW_GT_COUNT=0,1,0;RAW_MQandDP=143941,41;ReadPosRankSum=0.170;VarDP=28 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,4,0:28:67:0|1:3996815_T_TATTAC:67,0,990,145,816,1086:3996815:5,8,1,1 +chrX 3996853 . A . . END=3997347 GT:DP:GQ:MIN_DP:PL 0/0:42:38:41:0,38,1054 +chrX 3997348 . C T, 793.64 . AS_QUALapprox=|801|0;AS_VarDP=19|28|0;BaseQRankSum=0.984;DP=48;MQRankSum=0.000;QUALapprox=801;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=-1.009;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:19,28,0:47:99:801,0,479,858,563,1422:8,11,17,11 +chrX 3997349 . G . . END=3997377 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,105,1420 +chrX 3997378 . C T, 585.64 . AS_QUALapprox=|593|0;AS_VarDP=19|22|0;BaseQRankSum=2.508;DP=43;MQRankSum=0.000;QUALapprox=593;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154800,43;ReadPosRankSum=2.289;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:19,22,0:41:99:593,0,418,649,484,1133:7,12,13,9 +chrX 3997379 . G . . END=3997390 GT:DP:GQ:MIN_DP:PL 0/0:38:84:38:0,84,1260 +chrX 3997391 . CA C, 315.60 . AS_QUALapprox=|323|0;AS_VarDP=16|16|0;BaseQRankSum=2.509;DP=48;MQRankSum=1.063;QUALapprox=323;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172449,48;ReadPosRankSum=2.836;VarDP=32 GT:AD:DP:GQ:PL:SB 0/1:16,16,0:32:99:323,0,315,371,363,734:5,11,12,4 +chrX 3997393 . A . . END=3997459 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,105,1250 +chrX 3997460 . T C, 660.64 . AS_QUALapprox=|668|0;AS_VarDP=16|26|0;BaseQRankSum=-0.792;DP=43;MQRankSum=0.000;QUALapprox=668;RAW_GT_COUNT=0,1,0;RAW_MQandDP=153904,43;ReadPosRankSum=-0.596;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:16,26,0:42:99:668,0,385,716,462,1178:9,7,13,13 +chrX 3997461 . A . . END=3997561 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,100,1316 +chrX 3997562 . C . . END=3997562 GT:DP:GQ:MIN_DP:PL 0/0:44:18:44:0,18,1101 +chrX 3997563 . A . . END=3997655 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,101,1410 +chrX 3997656 . A G, 844.64 . AS_QUALapprox=|852|0;AS_VarDP=21|33|0;BaseQRankSum=-1.766;DP=54;MQRankSum=0.000;QUALapprox=852;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=0.071;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:21,33,0:54:99:852,0,518,913,617,1530:12,9,20,13 +chrX 3997657 . T . . END=3997876 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 3997877 . G A, 1074.64 . AS_QUALapprox=|1082|0;AS_VarDP=28|40|0;BaseQRankSum=1.180;DP=70;MQRankSum=0.000;QUALapprox=1082;RAW_GT_COUNT=0,1,0;RAW_MQandDP=252000,70;ReadPosRankSum=0.305;VarDP=68 GT:AD:DP:GQ:PL:SB 0/1:28,40,0:68:99:1082,0,651,1165,771,1936:15,13,21,19 +chrX 3997878 . G . . END=3999441 GT:DP:GQ:MIN_DP:PL 0/0:63:73:63:0,73,1350 +chrX 3999442 . A T, 728.64 . AS_QUALapprox=|736|0;AS_VarDP=18|26|0;BaseQRankSum=1.303;DP=45;MQRankSum=0.000;QUALapprox=736;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=-0.800;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:18,26,0:44:99:736,0,453,791,530,1321:9,9,13,13 +chrX 3999443 . C . . END=3999947 GT:DP:GQ:MIN_DP:PL 0/0:56:77:56:0,77,1304 +chrX 3999948 . A G, 721.64 . AS_QUALapprox=|729|0;AS_VarDP=35|29|0;BaseQRankSum=-1.036;DP=66;MQRankSum=0.000;QUALapprox=729;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=1.417;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:35,29,0:64:99:729,0,975,835,1061,1896:21,14,12,17 +chrX 3999949 . G . . END=4000733 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,101,1340 +chrX 4000734 . C T, 456.64 . AS_QUALapprox=|464|0;AS_VarDP=22|17|0;BaseQRankSum=0.834;DP=43;MQRankSum=0.000;QUALapprox=464;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154800,43;ReadPosRankSum=2.297;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:22,17,0:39:99:464,0,599,530,650,1180:9,13,14,3 +chrX 4000735 . C . . END=4000750 GT:DP:GQ:MIN_DP:PL 0/0:38:84:38:0,84,1242 +chrX 4000751 . A AAC, 318.60 . AS_QUALapprox=|326|0;AS_VarDP=6|15|0;BaseQRankSum=0.098;DP=43;MQRankSum=-0.527;QUALapprox=326;RAW_GT_COUNT=0,1,0;RAW_MQandDP=152800,43;ReadPosRankSum=-1.479;VarDP=21 GT:AD:DP:GQ:PL:SB 0/1:6,15,0:21:99:326,0,102,345,147,492:2,4,8,7 +chrX 4000752 . A . . END=4004448 GT:DP:GQ:MIN_DP:PL 0/0:49:38:44:0,38,990 +chrX 4004449 . A C, 540.64 . AS_QUALapprox=|548|0;AS_VarDP=29|20|0;BaseQRankSum=0.294;DP=51;MQRankSum=0.000;QUALapprox=548;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=1.007;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:29,20,0:49:99:548,0,838,635,898,1533:15,14,11,9 +chrX 4004450 . A . . END=4004775 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,108,1514 +chrX 4004776 . G C, 932.64 . AS_QUALapprox=|940|0;AS_VarDP=24|33|0;BaseQRankSum=0.808;DP=57;MQRankSum=0.000;QUALapprox=940;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=0.356;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:24,33,0:57:99:940,0,632,1012,730,1743:11,13,12,21 +chrX 4004777 . T . . END=4004914 GT:DP:GQ:MIN_DP:PL 0/0:51:90:51:0,90,1400 +chrX 4004915 . A G, 535.64 . AS_QUALapprox=|543|0;AS_VarDP=20|19|0;BaseQRankSum=2.328;DP=42;MQRankSum=0.000;QUALapprox=543;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151200,42;ReadPosRankSum=0.647;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:20,19,0:39:99:543,0,527,603,585,1188:9,11,11,8 +chrX 4004916 . C . . END=4006269 GT:DP:GQ:MIN_DP:PL 0/0:52:72:52:0,72,1261 +chrX 4006270 . T G, 994.64 . AS_QUALapprox=|1002|0;AS_VarDP=23|35|0;BaseQRankSum=1.395;DP=62;MQRankSum=0.000;QUALapprox=1002;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=-1.880;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:23,35,0:58:99:1002,0,565,1123,717,2066:10,13,18,16 +chrX 4006271 . C . . END=4006741 GT:DP:GQ:MIN_DP:PL 0/0:58:78:58:0,78,1567 +chrX 4006742 . A G, 495.64 . AS_QUALapprox=|503|0;AS_VarDP=33|21|0;BaseQRankSum=0.012;DP=54;MQRankSum=0.000;QUALapprox=503;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=1.492;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:33,21,0:54:99:503,0,890,602,953,1555:13,20,9,12 +chrX 4006743 . G . . END=4007502 GT:DP:GQ:MIN_DP:PL 0/0:48:82:48:0,82,1111 +chrX 4007503 . A G, 709.64 . AS_QUALapprox=|717|0;AS_VarDP=25|27|0;BaseQRankSum=-1.114;DP=53;MQRankSum=0.000;QUALapprox=717;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=0.266;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:25,27,0:52:99:717,0,693,792,773,1565:17,8,13,14 +chrX 4007504 . A . . END=4008081 GT:DP:GQ:MIN_DP:PL 0/0:66:24:54:0,24,1250 +chrX 4008082 . T TTTATTTTATTTATA, 1139.60 . AS_QUALapprox=|1147|0;AS_VarDP=33|30|0;BaseQRankSum=-0.296;DP=65;MQRankSum=0.000;QUALapprox=1147;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=-0.682;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:33,30,0:63:99:1147,0,1284,1247,1374,2621:12,21,16,14 +chrX 4008083 . A . . END=4008528 GT:DP:GQ:MIN_DP:PL 0/0:64:20:31:0,20,868 +chrX 4008529 . T . . END=4008533 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,0 +chrX 4008534 . A . . END=4008573 GT:DP:GQ:MIN_DP:PL 0/0:48:33:39:0,33,1097 +chrX 4008574 . C . . END=4008574 GT:DP:GQ:MIN_DP:PL 0/0:63:0:63:0,0,1604 +chrX 4008575 . A . . END=4012737 GT:DP:GQ:MIN_DP:PL 0/0:54:28:34:0,28,973 +chrX 4012738 . T C, 572.64 . AS_QUALapprox=|580|0;AS_VarDP=18|22|0;BaseQRankSum=-0.429;DP=41;MQRankSum=0.000;QUALapprox=580;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147600,41;ReadPosRankSum=0.898;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:18,22,0:40:99:580,0,461,634,527,1160:8,10,9,13 +chrX 4012739 . T . . END=4013774 GT:DP:GQ:MIN_DP:PL 0/0:53:54:53:0,54,1086 +chrX 4013775 . T C, 872.64 . AS_QUALapprox=|880|0;AS_VarDP=26|33|0;BaseQRankSum=-0.354;DP=62;MQRankSum=0.000;QUALapprox=880;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=0.809;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:26,33,0:59:99:880,0,666,958,766,1723:13,13,17,16 +chrX 4013776 . A . . END=4013985 GT:DP:GQ:MIN_DP:PL 0/0:61:93:61:0,93,1668 +chrX 4013986 . A G, 1007.64 . AS_QUALapprox=|1015|0;AS_VarDP=20|37|0;BaseQRankSum=0.247;DP=57;MQRankSum=0.000;QUALapprox=1015;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-1.029;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:20,37,0:57:99:1015,0,464,1075,575,1650:11,9,17,20 +chrX 4013987 . G . . END=4014814 GT:DP:GQ:MIN_DP:PL 0/0:55:79:55:0,79,1274 +chrX 4014815 . GT G,TT, 1081.06 . AS_QUALapprox=|395|610|0;AS_VarDP=1|20|23|0;BaseQRankSum=2.066;DP=49;MQRankSum=0.000;QUALapprox=1098;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176164,49;ReadPosRankSum=-0.552;VarDP=44 GT:AD:DP:GQ:PL:SB 1/2:1,20,23,0:44:99:1098,703,859,488,0,847,1198,844,734,1480:1,0,23,20 +chrX 4014817 . T . . END=4016713 GT:DP:GQ:MIN_DP:PL 0/0:54:42:49:0,42,1215 +chrX 4016714 . A G, 598.64 . AS_QUALapprox=|606|0;AS_VarDP=27|24|0;BaseQRankSum=-0.527;DP=53;MQRankSum=0.000;QUALapprox=606;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=-0.094;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:27,24,0:51:99:606,0,721,687,792,1479:9,18,7,17 +chrX 4016715 . G . . END=4017038 GT:DP:GQ:MIN_DP:PL 0/0:41:74:41:0,74,1052 +chrX 4017039 . G A, 203.64 . AS_QUALapprox=|211|0;AS_VarDP=29|10|0;BaseQRankSum=1.249;DP=40;MQRankSum=0.000;QUALapprox=211;RAW_GT_COUNT=0,1,0;RAW_MQandDP=144000,40;ReadPosRankSum=-0.113;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:29,10,0:39:99:211,0,756,298,786,1083:15,14,5,5 +chrX 4017040 . C . . END=4022030 GT:DP:GQ:MIN_DP:PL 0/0:54:45:54:0,45,1102 +chrX 4022031 . A T, 836.64 . AS_QUALapprox=|844|0;AS_VarDP=32|31|0;BaseQRankSum=-0.425;DP=63;MQRankSum=0.000;QUALapprox=844;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=-0.048;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:32,31,0:63:99:844,0,873,940,965,1905:15,17,16,15 +chrX 4022032 . C . . END=4024005 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,104,1339 +chrX 4024006 . G GA, 899.60 . AS_QUALapprox=|907|0;AS_VarDP=20|38|0;BaseQRankSum=-0.063;DP=65;MQRankSum=0.000;QUALapprox=907;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=-0.172;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:20,38,0:58:99:907,0,402,967,517,1483:10,10,22,16 +chrX 4024007 . A . . END=4024642 GT:DP:GQ:MIN_DP:PL 0/0:56:93:56:0,93,1310 +chrX 4024643 . C T, 761.64 . AS_QUALapprox=|769|0;AS_VarDP=25|28|0;BaseQRankSum=-0.352;DP=56;MQRankSum=0.000;QUALapprox=769;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=0.472;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:25,28,0:53:99:769,0,690,844,774,1618:12,13,15,13 +chrX 4024644 . C . . END=4025779 GT:DP:GQ:MIN_DP:PL 0/0:30:31:25:0,31,700 +chrX 4025780 . A . . END=4025780 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,605 +chrX 4025781 . T . . END=4025789 GT:DP:GQ:MIN_DP:PL 0/0:37:40:37:0,40,793 +chrX 4025790 . T . . END=4025790 GT:DP:GQ:MIN_DP:PL 0/0:32:18:32:0,18,835 +chrX 4025791 . C . . END=4027070 GT:DP:GQ:MIN_DP:PL 0/0:39:30:36:0,30,964 +chrX 4027071 . A G, 578.64 . AS_QUALapprox=|586|0;AS_VarDP=27|23|0;BaseQRankSum=-2.783;DP=51;MQRankSum=0.000;QUALapprox=586;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-2.152;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:27,23,0:50:99:586,0,788,668,857,1525:10,17,10,13 +chrX 4027072 . G . . END=4027290 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,116,1361 +chrX 4027291 . C T, 951.64 . AS_QUALapprox=|959|0;AS_VarDP=23|34|0;BaseQRankSum=0.691;DP=59;MQRankSum=0.000;QUALapprox=959;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=0.016;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:23,34,0:57:99:959,0,577,1028,680,1707:11,12,19,15 +chrX 4027292 . T . . END=4028000 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,112,1553 +chrX 4028001 . A G, 614.64 . AS_QUALapprox=|622|0;AS_VarDP=26|23|0;BaseQRankSum=-0.592;DP=49;MQRankSum=0.000;QUALapprox=622;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=1.694;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:26,23,0:49:99:622,0,736,700,806,1506:10,16,12,11 +chrX 4028002 . T . . END=4028723 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,103,1459 +chrX 4028724 . C CAG, 1050.60 . AS_QUALapprox=|1058|0;AS_VarDP=21|27|0;BaseQRankSum=0.399;DP=53;MQRankSum=0.000;QUALapprox=1058;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=0.468;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:21,27,0:48:99:1058,0,790,1121,871,1993:9,12,14,13 +chrX 4028725 . A . . END=4029602 GT:DP:GQ:MIN_DP:PL 0/0:49:92:49:0,92,1246 +chrX 4029603 . A G, 913.64 . AS_QUALapprox=|921|0;AS_VarDP=19|33|0;BaseQRankSum=0.000;DP=53;MQRankSum=0.000;QUALapprox=921;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=-0.846;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:19,33,0:52:99:921,0,464,978,563,1541:11,8,15,18 +chrX 4029604 . C . . END=4029642 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 4029643 . T C, 896.64 . AS_QUALapprox=|904|0;AS_VarDP=22|34|0;BaseQRankSum=-1.849;DP=57;MQRankSum=0.000;QUALapprox=904;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=0.529;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:22,34,0:56:99:904,0,598,971,698,1669:13,9,18,16 +chrX 4029644 . T . . END=4029667 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 4029668 . C G, 974.64 . AS_QUALapprox=|982|0;AS_VarDP=23|35|0;BaseQRankSum=-0.891;DP=60;MQRankSum=0.000;QUALapprox=982;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=0.254;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:23,35,0:58:99:982,0,605,1051,710,1762:15,8,17,18 +chrX 4029669 . T . . END=4029802 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,115,1406 +chrX 4029803 . G A, 641.64 . AS_QUALapprox=|649|0;AS_VarDP=18|24|0;BaseQRankSum=-0.874;DP=44;MQRankSum=0.000;QUALapprox=649;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=-0.929;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:18,24,0:42:99:649,0,449,702,521,1223:9,9,9,15 +chrX 4029804 . G . . END=4029898 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,108,1294 +chrX 4029899 . G A, 736.64 . AS_QUALapprox=|744|0;AS_VarDP=21|26|0;BaseQRankSum=1.642;DP=48;MQRankSum=0.000;QUALapprox=744;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=0.182;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:21,26,0:47:99:744,0,489,806,568,1373:9,12,10,16 +chrX 4029900 . G . . END=4030006 GT:DP:GQ:MIN_DP:PL 0/0:45:43:45:0,43,1101 +chrX 4030007 . G . . END=4030007 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,956 +chrX 4030008 . A . . END=4030011 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,102,1206 +chrX 4030012 . G . . END=4030012 GT:DP:GQ:MIN_DP:PL 0/0:38:19:38:0,19,930 +chrX 4030013 . G . . END=4030014 GT:DP:GQ:MIN_DP:PL 0/0:32:20:30:0,20,921 +chrX 4030015 . C CA, 526.60 . AS_QUALapprox=|534|0;AS_VarDP=15|16|0;BaseQRankSum=0.046;DP=34;MQRankSum=0.000;QUALapprox=534;RAW_GT_COUNT=0,1,0;RAW_MQandDP=122400,34;ReadPosRankSum=1.147;VarDP=31 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:15,16,0:31:99:1|0:4030013_G_A:534,0,512,579,560,1139:4030013:8,7,11,5 +chrX 4030016 . A . . END=4030030 GT:DP:GQ:MIN_DP:PL 0/0:33:66:33:0,66,990 +chrX 4030031 . C A, 579.64 . AS_QUALapprox=|587|0;AS_VarDP=17|18|0;BaseQRankSum=1.132;DP=38;MQRankSum=-0.915;QUALapprox=587;RAW_GT_COUNT=0,1,0;RAW_MQandDP=134800,38;ReadPosRankSum=-0.116;VarDP=35 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:17,18,0:35:99:1|0:4030013_G_A:587,0,567,638,621,1259:4030013:10,7,13,5 +chrX 4030032 . A . . END=4030283 GT:DP:GQ:MIN_DP:PL 0/0:48:28:42:0,28,1145 +chrX 4030284 . A G, 599.64 . AS_QUALapprox=|607|0;AS_VarDP=24|22|0;BaseQRankSum=0.809;DP=46;MQRankSum=0.000;QUALapprox=607;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=1.012;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:24,22,0:46:99:607,0,641,679,707,1386:13,11,10,12 +chrX 4030285 . A . . END=4030459 GT:DP:GQ:MIN_DP:PL 0/0:42:68:42:0,68,1097 +chrX 4030460 . G GAGT, 909.60 . AS_QUALapprox=|917|0;AS_VarDP=29|25|0;BaseQRankSum=-2.090;DP=61;MQRankSum=0.000;QUALapprox=917;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-0.408;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:29,25,0:54:99:917,0,1133,1004,1208,2212:10,19,9,16 +chrX 4030461 . A . . END=4030511 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 4030512 . C G, 920.64 . AS_QUALapprox=|928|0;AS_VarDP=26|35|0;BaseQRankSum=-0.629;DP=63;MQRankSum=0.000;QUALapprox=928;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=0.007;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:26,35,0:61:99:928,0,671,1006,776,1782:8,18,14,21 +chrX 4030513 . T . . END=4030738 GT:DP:GQ:MIN_DP:PL 0/0:48:83:48:0,83,1147 +chrX 4030739 . A G, 574.64 . AS_QUALapprox=|582|0;AS_VarDP=24|25|0;BaseQRankSum=-2.120;DP=50;MQRankSum=0.000;QUALapprox=582;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=-0.610;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:24,25,0:49:99:582,0,668,654,742,1396:18,6,17,8 +chrX 4030740 . C . . END=4031170 GT:DP:GQ:MIN_DP:PL 0/0:53:86:53:0,86,1420 +chrX 4031171 . T C, 818.64 . AS_QUALapprox=|826|0;AS_VarDP=23|32|0;BaseQRankSum=-1.377;DP=56;MQRankSum=0.000;QUALapprox=826;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=1.212;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:23,32,0:55:99:826,0,605,895,700,1595:14,9,17,15 +chrX 4031172 . T . . END=4031728 GT:DP:GQ:MIN_DP:PL 0/0:48:88:48:0,88,1237 +chrX 4031729 . CTCTATCTATCTA C, 1224.03 . AS_QUALapprox=|1238|0;AS_VarDP=0|28|0;DP=44;QUALapprox=1238;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158281,44;VarDP=28 GT:AD:DP:GQ:PL:SB 1/1:0,28,0:28:86:1238,86,0,1238,86,1238:0,0,17,11 +chrX 4031742 . T . . END=4031765 GT:DP:GQ:MIN_DP:PL 0/0:40:81:40:0,81,1215 +chrX 4031766 . T . . END=4031766 GT:DP:GQ:MIN_DP:PL 0/0:35:1:35:0,1,928 +chrX 4031767 . C . . END=4032455 GT:DP:GQ:MIN_DP:PL 0/0:35:33:34:0,33,962 +chrX 4032456 . T TTATC, 754.60 . AS_QUALapprox=|762|0;AS_VarDP=24|20|0;BaseQRankSum=-0.219;DP=51;MQRankSum=0.000;QUALapprox=762;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=0.307;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:24,20,0:44:99:762,0,926,834,986,1820:16,8,10,10 +chrX 4032457 . T . . END=4032458 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,105,1575 +chrX 4032459 . T TCTATTAG, 905.60 . AS_QUALapprox=|913|0;AS_VarDP=24|24|0;BaseQRankSum=1.011;DP=54;MQRankSum=0.000;QUALapprox=913;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=-0.361;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:24,24,0:48:99:913,0,926,986,998,1984:12,12,16,8 +chrX 4032460 . C . . END=4032516 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,105,1575 +chrX 4032517 . C T, 617.64 . AS_QUALapprox=|625|0;AS_VarDP=27|23|0;BaseQRankSum=2.646;DP=52;MQRankSum=0.000;QUALapprox=625;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=0.574;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:27,23,0:50:99:625,0,673,705,742,1448:13,14,19,4 +chrX 4032518 . C . . END=4032681 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,114,1447 +chrX 4032682 . G A, 878.64 . AS_QUALapprox=|886|0;AS_VarDP=30|31|0;BaseQRankSum=2.836;DP=63;MQRankSum=0.000;QUALapprox=886;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=0.736;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:30,31,0:61:99:886,0,723,974,816,1791:11,19,12,19 +chrX 4032683 . G . . END=4033458 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,110,1473 +chrX 4033459 . T C, 891.64 . AS_QUALapprox=|899|0;AS_VarDP=28|31|0;BaseQRankSum=0.598;DP=61;MQRankSum=0.000;QUALapprox=899;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=0.903;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:28,31,0:59:99:899,0,776,983,869,1853:17,11,12,19 +chrX 4033460 . A . . END=4033751 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,101,1800 +chrX 4033752 . T TTGTGTG, 639.60 . AS_QUALapprox=|647|0;AS_VarDP=17|24|0;BaseQRankSum=-0.316;DP=61;MQRankSum=0.000;QUALapprox=647;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219481,61;ReadPosRankSum=0.927;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:17,24,0:41:99:647,0,585,699,657,1356:5,12,7,17 +chrX 4033753 . T . . END=4033911 GT:DP:GQ:MIN_DP:PL 0/0:57:76:57:0,76,1335 +chrX 4033912 . G . . END=4033912 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,959 +chrX 4033913 . A . . END=4034053 GT:DP:GQ:MIN_DP:PL 0/0:36:66:36:0,66,978 +chrX 4034054 . T C, 623.64 . AS_QUALapprox=|631|0;AS_VarDP=20|25|0;BaseQRankSum=-1.410;DP=47;MQRankSum=-0.850;QUALapprox=631;RAW_GT_COUNT=0,1,0;RAW_MQandDP=167364,47;ReadPosRankSum=0.846;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:20,25,0:45:99:631,0,520,691,595,1286:12,8,11,14 +chrX 4034055 . G . . END=4034087 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,100,1271 +chrX 4034088 . A G, 698.64 . AS_QUALapprox=|706|0;AS_VarDP=19|27|0;BaseQRankSum=-1.335;DP=48;MQRankSum=-0.795;QUALapprox=706;RAW_GT_COUNT=0,1,0;RAW_MQandDP=170964,48;ReadPosRankSum=0.312;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:19,27,0:46:99:706,0,512,763,591,1354:9,10,12,15 +chrX 4034089 . A . . END=4034250 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,108,1475 +chrX 4034251 . C A, 622.64 . AS_QUALapprox=|630|0;AS_VarDP=21|27|0;BaseQRankSum=-1.620;DP=48;MQRankSum=0.000;QUALapprox=630;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=-1.737;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:21,27,0:48:99:630,0,537,693,617,1310:13,8,12,15 +chrX 4034252 . A . . END=4034430 GT:DP:GQ:MIN_DP:PL 0/0:45:64:45:0,64,1091 +chrX 4034431 . C T, 580.64 . AS_QUALapprox=|588|0;AS_VarDP=18|23|0;BaseQRankSum=0.203;DP=45;MQRankSum=0.000;QUALapprox=588;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=-1.275;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:18,23,0:41:99:588,0,424,641,492,1133:6,12,16,7 +chrX 4034432 . T . . END=4034465 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,102,1101 +chrX 4034466 . AT A, 421.60 . AS_QUALapprox=|429|0;AS_VarDP=12|21|0;BaseQRankSum=1.321;DP=38;MQRankSum=0.000;QUALapprox=429;RAW_GT_COUNT=0,1,0;RAW_MQandDP=136800,38;ReadPosRankSum=-0.580;VarDP=33 GT:AD:DP:GQ:PL:SB 0/1:12,21,0:33:99:429,0,196,465,259,724:4,8,15,6 +chrX 4034468 . T . . END=4034627 GT:DP:GQ:MIN_DP:PL 0/0:47:25:43:0,25,1077 +chrX 4034628 . C T, 833.64 . AS_QUALapprox=|841|0;AS_VarDP=16|31|0;BaseQRankSum=-0.565;DP=49;MQRankSum=0.000;QUALapprox=841;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=2.078;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:16,31,0:47:99:841,0,385,890,478,1368:10,6,16,15 +chrX 4034629 . G . . END=4034800 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 4034801 . C T, 832.64 . AS_QUALapprox=|840|0;AS_VarDP=31|30|0;BaseQRankSum=1.771;DP=63;MQRankSum=0.000;QUALapprox=840;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=0.895;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:31,30,0:61:99:840,0,809,933,899,1832:15,16,16,14 +chrX 4034802 . G . . END=4035181 GT:DP:GQ:MIN_DP:PL 0/0:59:83:59:0,83,1415 +chrX 4035182 . A G, 684.64 . AS_QUALapprox=|692|0;AS_VarDP=24|25|0;BaseQRankSum=-1.709;DP=49;MQRankSum=0.000;QUALapprox=692;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=1.961;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:24,25,0:49:99:692,0,687,764,762,1526:14,10,11,14 +chrX 4035183 . G . . END=4035288 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 4035289 . G C, 621.64 . AS_QUALapprox=|629|0;AS_VarDP=23|22|0;BaseQRankSum=2.315;DP=46;MQRankSum=0.000;QUALapprox=629;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=-0.818;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:23,22,0:45:99:629,0,614,699,680,1379:10,13,12,10 +chrX 4035290 . T . . END=4035908 GT:DP:GQ:MIN_DP:PL 0/0:61:93:61:0,93,1266 +chrX 4035909 . G A, 646.64 . AS_QUALapprox=|654|0;AS_VarDP=26|25|0;BaseQRankSum=0.628;DP=53;MQRankSum=0.000;QUALapprox=654;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=0.811;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:26,25,0:51:99:654,0,676,732,751,1483:10,16,11,14 +chrX 4035910 . A . . END=4035948 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,117,1474 +chrX 4035949 . GC G, 810.60 . AS_QUALapprox=|818|0;AS_VarDP=21|26|0;BaseQRankSum=0.465;DP=49;MQRankSum=0.000;QUALapprox=818;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=-0.353;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:21,26,0:47:99:818,0,624,881,702,1583:7,14,14,12 +chrX 4035951 . T . . END=4036097 GT:DP:GQ:MIN_DP:PL 0/0:56:91:56:0,91,1470 +chrX 4036098 . G T, 779.64 . AS_QUALapprox=|787|0;AS_VarDP=24|30|0;BaseQRankSum=-1.008;DP=57;MQRankSum=0.000;QUALapprox=787;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-0.731;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:24,30,0:54:99:787,0,617,859,707,1566:10,14,11,19 +chrX 4036099 . G . . END=4036535 GT:DP:GQ:MIN_DP:PL 0/0:58:64:58:0,64,1276 +chrX 4036536 . A T, 801.64 . AS_QUALapprox=|809|0;AS_VarDP=35|31|0;BaseQRankSum=-0.475;DP=68;MQRankSum=0.000;QUALapprox=809;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=0.219;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:35,31,0:66:99:809,0,942,914,1035,1949:19,16,12,19 +chrX 4036537 . T . . END=4036930 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,110,1474 +chrX 4036931 . C T, 773.64 . AS_QUALapprox=|781|0;AS_VarDP=27|30|0;BaseQRankSum=-0.020;DP=58;MQRankSum=0.000;QUALapprox=781;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-0.648;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:27,30,0:57:99:781,0,686,863,776,1639:14,13,15,15 +chrX 4036932 . G . . END=4037246 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 4037247 . T C, 628.64 . AS_QUALapprox=|636|0;AS_VarDP=23|23|0;BaseQRankSum=-0.957;DP=49;MQRankSum=0.000;QUALapprox=636;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=0.495;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:23,23,0:46:99:636,0,661,706,730,1436:15,8,10,13 +chrX 4037248 . A . . END=4037615 GT:DP:GQ:MIN_DP:PL 0/0:51:87:51:0,87,1311 +chrX 4037616 . G C, 449.64 . AS_QUALapprox=|457|0;AS_VarDP=29|19|0;BaseQRankSum=-0.587;DP=51;MQRankSum=0.000;QUALapprox=457;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-0.833;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:29,19,0:48:99:457,0,819,544,875,1419:17,12,9,10 +chrX 4037617 . T . . END=4038124 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,104,1470 +chrX 4038125 . C T, 837.64 . AS_QUALapprox=|845|0;AS_VarDP=47|33|0;BaseQRankSum=1.745;DP=82;MQRankSum=0.000;QUALapprox=845;RAW_GT_COUNT=0,1,0;RAW_MQandDP=295200,82;ReadPosRankSum=-0.171;VarDP=80 GT:AD:DP:GQ:PL:SB 0/1:47,33,0:80:99:845,0,1223,986,1322,2308:28,19,18,15 +chrX 4038126 . G . . END=4038898 GT:DP:GQ:MIN_DP:PL 0/0:56:52:56:0,52,1340 +chrX 4038899 . G A, 478.64 . AS_QUALapprox=|486|0;AS_VarDP=28|18|0;BaseQRankSum=-0.438;DP=49;MQRankSum=0.000;QUALapprox=486;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=-0.687;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:28,18,0:46:99:486,0,815,571,869,1440:15,13,11,7 +chrX 4038900 . T . . END=4039868 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,103,1422 +chrX 4039869 . GGTA G, 941.60 . AS_QUALapprox=|949|0;AS_VarDP=30|25|0;BaseQRankSum=-0.775;DP=56;MQRankSum=0.000;QUALapprox=949;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=0.262;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:30,25,0:55:99:949,0,1152,1040,1227,2267:16,14,10,15 +chrX 4039873 . C . . END=4040174 GT:DP:GQ:MIN_DP:PL 0/0:48:96:48:0,96,1186 +chrX 4040175 . T C, 557.64 . AS_QUALapprox=|565|0;AS_VarDP=26|22|0;BaseQRankSum=-0.304;DP=50;MQRankSum=0.000;QUALapprox=565;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=-1.449;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:26,22,0:48:99:565,0,720,643,786,1429:14,12,8,14 +chrX 4040176 . T . . END=4040276 GT:DP:GQ:MIN_DP:PL 0/0:47:37:47:0,37,1296 +chrX 4040277 . C CATATAT, 366.60 . AS_QUALapprox=|374|0;AS_VarDP=29|11|0;BaseQRankSum=1.495;DP=45;MQRankSum=0.000;QUALapprox=374;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=-1.483;VarDP=40 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,11,0:40:99:0|1:4040277_C_CATATAT:374,0,1164,462,1197,1659:4040277:16,13,7,4 +chrX 4040278 . A . . END=4040295 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,101,1340 +chrX 4040296 . G A, 448.64 . AS_QUALapprox=|456|0;AS_VarDP=30|14|0;BaseQRankSum=2.163;DP=46;MQRankSum=0.000;QUALapprox=456;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=-0.454;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:30,14,0:44:99:0|1:4040277_C_CATATAT:456,0,1187,546,1229,1775:4040277:17,13,10,4 +chrX 4040297 . T . . END=4040995 GT:DP:GQ:MIN_DP:PL 0/0:55:66:55:0,66,1098 +chrX 4040996 . G A, 741.64 . AS_QUALapprox=|749|0;AS_VarDP=27|27|0;BaseQRankSum=2.201;DP=60;MQRankSum=0.000;QUALapprox=749;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=-1.177;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:27,27,0:54:99:749,0,692,830,773,1602:12,15,16,11 +chrX 4040997 . A . . END=4041189 GT:DP:GQ:MIN_DP:PL 0/0:42:82:42:0,82,1117 +chrX 4041190 . G C, 1489.06 . AS_QUALapprox=|1503|0;AS_VarDP=0|44|0;DP=44;QUALapprox=1503;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158400,44;VarDP=44 GT:AD:DP:GQ:PL:SB 1/1:0,44,0:44:99:1503,132,0,1503,132,1503:0,0,18,26 +chrX 4041191 . C . . END=4047126 GT:DP:GQ:MIN_DP:PL 0/0:51:20:45:0,20,943 +chrX 4047127 . C . . END=4047127 GT:DP:GQ:MIN_DP:PL 0/0:50:0:50:0,0,1199 +chrX 4047128 . C . . END=4054090 GT:DP:GQ:MIN_DP:PL 0/0:58:77:58:0,77,1250 +chrX 4054091 . G T, 825.64 . AS_QUALapprox=|833|0;AS_VarDP=33|30|0;BaseQRankSum=1.372;DP=65;MQRankSum=0.000;QUALapprox=833;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=-0.220;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:33,30,0:63:99:833,0,898,932,988,1920:12,21,15,15 +chrX 4054092 . C . . END=4054639 GT:DP:GQ:MIN_DP:PL 0/0:61:98:61:0,98,1510 +chrX 4054640 . T A, 127.64 . AS_QUALapprox=|135|0;AS_VarDP=42|9|0;BaseQRankSum=0.429;DP=56;MQRankSum=0.514;QUALapprox=135;RAW_GT_COUNT=0,1,0;RAW_MQandDP=200500,56;ReadPosRankSum=0.618;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:42,9,0:51:99:135,0,1223,261,1250,1511:21,21,5,4 +chrX 4054641 . T . . END=4055948 GT:DP:GQ:MIN_DP:PL 0/0:55:82:55:0,82,1155 +chrX 4055949 . CCA C, 306.60 . AS_QUALapprox=|314|0;AS_VarDP=15|15|0;BaseQRankSum=0.945;DP=48;MQRankSum=0.000;QUALapprox=314;RAW_GT_COUNT=0,1,0;RAW_MQandDP=170041,48;ReadPosRankSum=1.747;VarDP=30 GT:AD:DP:GQ:PL:SB 0/1:15,15,0:30:99:314,0,306,359,351,710:6,9,7,8 +chrX 4055952 . C . . END=4061195 GT:DP:GQ:MIN_DP:PL 0/0:32:21:28:0,21,662 +chrX 4061196 . G GTCTA, 648.60 . AS_QUALapprox=|656|0;AS_VarDP=12|17|0;BaseQRankSum=0.000;DP=44;MQRankSum=0.000;QUALapprox=656;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=0.111;VarDP=29 GT:AD:DP:GQ:PL:SB 0/1:12,17,0:29:99:656,0,433,693,484,1177:7,5,8,9 +chrX 4061197 . T . . END=4062321 GT:DP:GQ:MIN_DP:PL 0/0:59:78:59:0,78,1170 +chrX 4062322 . G . . END=4062322 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,888 +chrX 4062323 . G . . END=4062424 GT:DP:GQ:MIN_DP:PL 0/0:42:56:42:0,56,788 +chrX 4062425 . C T, 229.64 . AS_QUALapprox=|237|0;AS_VarDP=34|11|0;BaseQRankSum=0.267;DP=46;MQRankSum=0.000;QUALapprox=237;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=-1.017;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:34,11,0:45:99:237,0,1007,339,1040,1379:19,15,3,8 +chrX 4062426 . T . . END=4067334 GT:DP:GQ:MIN_DP:PL 0/0:54:63:54:0,63,894 +chrX 4067335 . CT C, 531.02 . AS_QUALapprox=|545|0;AS_VarDP=0|13|0;DP=36;QUALapprox=545;RAW_GT_COUNT=0,0,1;RAW_MQandDP=125600,36;VarDP=13 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,13,0:13:39:0|1:4067335_CT_C:545,39,0,547,40,548:4067335:0,0,1,12 +chrX 4067337 . T . . END=4067343 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,0 +chrX 4067344 . C *,CT, 260.01 . AS_QUALapprox=|0|560|0;AS_VarDP=7|0|6|0;BaseQRankSum=-0.097;DP=33;MQRankSum=0.000;QUALapprox=560;RAW_GT_COUNT=0,1,0;RAW_MQandDP=116800,33;ReadPosRankSum=1.485;VarDP=13 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|2:7,0,6,0:13:99:0|1:4067335_CT_C:560,240,681,0,261,426,446,635,395,876:4067335:1,6,0,6 +chrX 4067345 . TTTC *,T, 308.04 . AS_QUALapprox=|0|404|0;AS_VarDP=15|0|7|0;BaseQRankSum=-0.424;DP=32;MQRankSum=0.000;QUALapprox=404;RAW_GT_COUNT=0,1,0;RAW_MQandDP=113200,32;ReadPosRankSum=0.000;VarDP=22 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 2|0:15,0,7,0:22:99:1|0:4067335_CT_C:404,279,1043,0,623,594,378,989,638,1061:4067335:1,14,1,6 +chrX 4067349 . T . . END=4068206 GT:DP:GQ:MIN_DP:PL 0/0:51:32:47:0,32,1114 +chrX 4068207 . G . . END=4068207 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1225 +chrX 4068208 . A . . END=4068209 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 4068210 . C . . END=4068210 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,1157 +chrX 4068211 . A . . END=4068212 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 4068213 . G . . END=4068213 GT:DP:GQ:MIN_DP:PL 0/0:50:0:50:0,0,1221 +chrX 4068214 . A . . END=4068247 GT:DP:GQ:MIN_DP:PL 0/0:55:32:55:0,32,990 +chrX 4068248 . G . . END=4068249 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,859 +chrX 4068250 . A . . END=4068254 GT:DP:GQ:MIN_DP:PL 0/0:39:23:37:0,23,1018 +chrX 4068255 . C . . END=4068255 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,923 +chrX 4068256 . A . . END=4077442 GT:DP:GQ:MIN_DP:PL 0/0:57:64:57:0,64,794 +chrX 4077443 . G A, 103.64 . AS_QUALapprox=|111|0;AS_VarDP=38|8|0;BaseQRankSum=-0.141;DP=52;MQRankSum=0.000;QUALapprox=111;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=1.044;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:38,8,0:46:99:111,0,1018,224,1042,1266:21,17,6,2 +chrX 4077444 . C . . END=4080598 GT:DP:GQ:MIN_DP:PL 0/0:59:72:59:0,72,1286 +chrX 4080599 . A . . END=4080599 GT:DP:GQ:MIN_DP:PL 0/0:60:7:60:0,7,1467 +chrX 4080600 . T . . END=4080639 GT:DP:GQ:MIN_DP:PL 0/0:58:21:53:0,21,1344 +chrX 4080640 . G . . END=4080640 GT:DP:GQ:MIN_DP:PL 0/0:50:18:50:0,18,1192 +chrX 4080641 . C . . END=4080670 GT:DP:GQ:MIN_DP:PL 0/0:62:48:62:0,48,720 +chrX 4080671 . G . . END=4080674 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,233 +chrX 4080675 . C . . END=4081288 GT:DP:GQ:MIN_DP:PL 0/0:52:41:52:0,41,894 +chrX 4081289 . T . . END=4081289 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,794 +chrX 4081290 . C . . END=4081290 GT:DP:GQ:MIN_DP:PL 0/0:29:38:29:0,38,880 +chrX 4081291 . C . . END=4081291 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,765 +chrX 4081292 . C . . END=4081292 GT:DP:GQ:MIN_DP:PL 0/0:27:46:27:0,46,778 +chrX 4081293 . A . . END=4081293 GT:DP:GQ:MIN_DP:PL 0/0:27:0:27:0,0,482 +chrX 4081294 . C . . END=4082088 GT:DP:GQ:MIN_DP:PL 0/0:28:31:27:0,31,780 +chrX 4082089 . G . . END=4082089 GT:DP:GQ:MIN_DP:PL 0/0:35:11:35:0,11,998 +chrX 4082090 . T . . END=4082092 GT:DP:GQ:MIN_DP:PL 0/0:39:57:39:0,57,1103 +chrX 4082093 . C CA, 328.60 . AS_QUALapprox=|336|0;AS_VarDP=6|23|0;BaseQRankSum=0.066;DP=48;MQRankSum=-0.674;QUALapprox=336;RAW_GT_COUNT=0,1,0;RAW_MQandDP=168161,48;ReadPosRankSum=-1.941;VarDP=29 GT:AD:DP:GQ:PL:SB 0/1:6,23,0:29:35:336,0,35,354,101,454:5,1,11,12 +chrX 4082094 . A . . END=4082115 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,114,1710 +chrX 4082116 . G . . END=4082116 GT:DP:GQ:MIN_DP:PL 0/0:59:0:59:0,0,1534 +chrX 4082117 . T . . END=4086287 GT:DP:GQ:MIN_DP:PL 0/0:58:36:55:0,36,1181 +chrX 4086288 . G GT, 295.60 . AS_QUALapprox=|303|0;AS_VarDP=21|17|0;BaseQRankSum=0.471;DP=48;MQRankSum=0.000;QUALapprox=303;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=0.976;VarDP=38 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,17,0:38:99:0|1:4086288_G_GT:303,0,420,365,471,837:4086288:13,8,8,9 +chrX 4086289 . T . . END=4086301 GT:DP:GQ:MIN_DP:PL 0/0:43:87:43:0,87,1305 +chrX 4086302 . T . . END=4086304 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,1357 +chrX 4086305 . T . . END=4086308 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 4086309 . C . . END=4086309 GT:DP:GQ:MIN_DP:PL 0/0:44:3:44:0,3,1141 +chrX 4086310 . C . . END=4086484 GT:DP:GQ:MIN_DP:PL 0/0:42:26:38:0,26,1023 +chrX 4086485 . C T, 1969.06 . AS_QUALapprox=|1983|0;AS_VarDP=0|60|0;DP=60;QUALapprox=1983;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:1983,180,0,1983,180,1983:0,0,31,29 +chrX 4086486 . G . . END=4090556 GT:DP:GQ:MIN_DP:PL 0/0:55:71:55:0,71,1077 +chrX 4090557 . A AAACAAC, 1030.60 . AS_QUALapprox=|1038|0;AS_VarDP=18|26|0;BaseQRankSum=-0.733;DP=52;MQRankSum=0.000;QUALapprox=1038;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=-0.585;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:18,26,0:44:99:1038,0,621,1092,699,1791:9,9,16,10 +chrX 4090558 . A . . END=4091445 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,107,1396 +chrX 4091446 . A G, 667.64 . AS_QUALapprox=|675|0;AS_VarDP=23|25|0;BaseQRankSum=-1.080;DP=50;MQRankSum=0.000;QUALapprox=675;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=0.723;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:23,25,0:48:99:675,0,635,744,710,1454:11,12,17,8 +chrX 4091447 . C . . END=4092272 GT:DP:GQ:MIN_DP:PL 0/0:55:43:55:0,43,1296 +chrX 4092273 . A . . END=4092273 GT:DP:GQ:MIN_DP:PL 0/0:53:0:53:0,0,1206 +chrX 4092274 . T . . END=4094025 GT:DP:GQ:MIN_DP:PL 0/0:26:22:22:0,22,624 +chrX 4094026 . C . . END=4094026 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,520 +chrX 4094027 . A . . END=4094420 GT:DP:GQ:MIN_DP:PL 0/0:44:54:44:0,54,843 +chrX 4094421 . G . . END=4094421 GT:DP:GQ:MIN_DP:PL 0/0:55:0:55:0,0,1305 +chrX 4094422 . A . . END=4095873 GT:DP:GQ:MIN_DP:PL 0/0:60:51:60:0,51,765 +chrX 4095874 . C . . END=4095874 GT:DP:GQ:MIN_DP:PL 0/0:27:12:27:0,12,770 +chrX 4095875 . T . . END=4095876 GT:DP:GQ:MIN_DP:PL 0/0:30:48:30:0,48,720 +chrX 4095877 . C . . END=4095880 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,511 +chrX 4095881 . A . . END=4096910 GT:DP:GQ:MIN_DP:PL 0/0:55:43:55:0,43,720 +chrX 4096911 . G . . END=4096911 GT:DP:GQ:MIN_DP:PL 0/0:28:15:28:0,15,794 +chrX 4096912 . C . . END=4096912 GT:DP:GQ:MIN_DP:PL 0/0:24:33:24:0,33,675 +chrX 4096913 . CA C, 180.60 . AS_QUALapprox=|188|0;AS_VarDP=12|13|0;BaseQRankSum=0.000;DP=50;MQRankSum=-0.584;QUALapprox=188;RAW_GT_COUNT=0,1,0;RAW_MQandDP=167996,50;ReadPosRankSum=-1.446;VarDP=25 GT:AD:DP:GQ:PL:SB 0/1:12,13,0:25:99:188,0,139,223,178,401:2,10,13,0 +chrX 4096915 . A . . END=4096994 GT:DP:GQ:MIN_DP:PL 0/0:47:24:41:0,24,1056 +chrX 4096995 . T A,G, 5.62 . AS_QUALapprox=|13|0|0;AS_VarDP=36|7|3|0;BaseQRankSum=-3.252;DP=48;MQRankSum=0.000;QUALapprox=13;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=1.892;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:36,7,3,0:46:13:13,0,908,82,893,1003,118,928,1011,1046:17,19,7,3 +chrX 4096996 . A . . END=4102688 GT:DP:GQ:MIN_DP:PL 0/0:55:54:55:0,54,1195 +chrX 4102689 . G A, 1873.06 . AS_QUALapprox=|1887|0;AS_VarDP=0|56|0;DP=56;QUALapprox=1887;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1887,168,0,1887,168,1887:0,0,33,23 +chrX 4102690 . A . . END=4109641 GT:DP:GQ:MIN_DP:PL 0/0:52:38:44:0,38,1017 +chrX 4109642 . C CTG, 691.60 . AS_QUALapprox=|699|0;AS_VarDP=16|27|0;BaseQRankSum=2.104;DP=57;MQRankSum=-0.722;QUALapprox=699;RAW_GT_COUNT=0,1,0;RAW_MQandDP=200146,57;ReadPosRankSum=0.390;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:16,27,0:43:99:699,0,363,747,444,1191:7,9,17,10 +chrX 4109643 . T . . END=4112010 GT:DP:GQ:MIN_DP:PL 0/0:53:34:31:0,34,848 +chrX 4112011 . A . . END=4112011 GT:DP:GQ:MIN_DP:PL 0/0:40:11:40:0,11,1001 +chrX 4112012 . A . . END=4112013 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,102,1155 +chrX 4112014 . C . . END=4112014 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,790 +chrX 4112015 . AAGAG A, 682.60 . AS_QUALapprox=|690|0;AS_VarDP=10|18|0;BaseQRankSum=0.332;DP=40;MQRankSum=-0.671;QUALapprox=690;RAW_GT_COUNT=0,1,0;RAW_MQandDP=142000,40;ReadPosRankSum=1.261;VarDP=28 GT:AD:DP:GQ:PL:SB 0/1:10,18,0:28:99:690,0,319,720,374,1094:7,3,8,10 +chrX 4112020 . A . . END=4115742 GT:DP:GQ:MIN_DP:PL 0/0:47:26:45:0,26,1038 +chrX 4115743 . A . . END=4115743 GT:DP:GQ:MIN_DP:PL 0/0:45:2:45:0,2,1196 +chrX 4115744 . T . . END=4115755 GT:DP:GQ:MIN_DP:PL 0/0:56:67:56:0,67,1486 +chrX 4115756 . A AT, 284.60 . AS_QUALapprox=|292|0;AS_VarDP=11|19|0;BaseQRankSum=0.647;DP=48;MQRankSum=-0.692;QUALapprox=292;RAW_GT_COUNT=0,1,0;RAW_MQandDP=168041,48;ReadPosRankSum=-0.560;VarDP=30 GT:AD:DP:GQ:PL:SB 0/1:11,19,0:30:99:292,0,161,325,217,542:4,7,12,7 +chrX 4115757 . T . . END=4115773 GT:DP:GQ:MIN_DP:PL 0/0:57:90:57:0,90,1350 +chrX 4115774 . G . . END=4115774 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,843 +chrX 4115775 . A . . END=4117347 GT:DP:GQ:MIN_DP:PL 0/0:41:33:39:0,33,1077 +chrX 4117348 . A G, 615.64 . AS_QUALapprox=|623|0;AS_VarDP=23|24|0;BaseQRankSum=-0.049;DP=47;MQRankSum=0.000;QUALapprox=623;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=-0.117;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:23,24,0:47:99:623,0,619,692,690,1382:11,12,13,11 +chrX 4117349 . C . . END=4117928 GT:DP:GQ:MIN_DP:PL 0/0:56:59:56:0,59,1346 +chrX 4117929 . T TTTTA, 567.60 . AS_QUALapprox=|575|0;AS_VarDP=27|16|0;BaseQRankSum=0.689;DP=69;MQRankSum=0.000;QUALapprox=575;RAW_GT_COUNT=0,1,0;RAW_MQandDP=246649,69;ReadPosRankSum=-0.289;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:27,16,0:43:99:575,0,1082,657,1130,1787:14,13,9,7 +chrX 4117930 . T . . END=4119102 GT:DP:GQ:MIN_DP:PL 0/0:48:27:37:0,27,1058 +chrX 4119103 . T . . END=4119103 GT:DP:GQ:MIN_DP:PL 0/0:39:13:39:0,13,1107 +chrX 4119104 . C . . END=4119104 GT:DP:GQ:MIN_DP:PL 0/0:40:61:40:0,61,1191 +chrX 4119105 . G . . END=4119105 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,938 +chrX 4119106 . T . . END=4119118 GT:DP:GQ:MIN_DP:PL 0/0:40:60:40:0,60,978 +chrX 4119119 . T . . END=4119121 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,655 +chrX 4119122 . T . . END=4119142 GT:DP:GQ:MIN_DP:PL 0/0:29:21:25:0,21,244 +chrX 4119143 . C CTTCCTTCCCCCTTCT, 12.59 . AS_QUALapprox=|20|0;AS_VarDP=9|2|0;BaseQRankSum=-0.632;DP=21;MQRankSum=0.000;QUALapprox=20;RAW_GT_COUNT=0,1,0;RAW_MQandDP=75600,21;ReadPosRankSum=-2.362;VarDP=11 GT:AD:DP:GQ:PL:SB 0/1:9,2,0:11:20:20,0,304,49,310,359:0,9,0,2 +chrX 4119144 . T . . END=4119144 GT:DP:GQ:MIN_DP:PL 0/0:18:19:18:0,19,546 +chrX 4119145 . T . . END=4119178 GT:DP:GQ:MIN_DP:PL 0/0:17:36:14:0,36,417 +chrX 4119179 . T TCCC, 199.92 . AS_QUALapprox=|214|0;AS_VarDP=0|5|0;DP=13;QUALapprox=214;RAW_GT_COUNT=0,0,1;RAW_MQandDP=46800,13;VarDP=5 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,5,0:5:15:0|1:4119179_T_TCCC:214,15,0,214,15,215:4119179:0,0,0,5 +chrX 4119180 . C . . END=4119196 GT:DP:GQ:MIN_DP:PL 0/0:13:30:13:0,30,411 +chrX 4119197 . TTTCC T,CTTCC, 380.05 . AS_QUALapprox=|160|394|0;AS_VarDP=0|0|5|0;DP=13;QUALapprox=394;RAW_GT_COUNT=0,0,1;RAW_MQandDP=46800,13;VarDP=5 GT:AD:DP:GQ:PL:SB 2/2:0,0,5,0:5:20:394,234,314,27,20,0,324,284,33,354:0,0,0,5 +chrX 4119201 . C *,CTTCCTTCT, 246.88 . AS_QUALapprox=|0|394|0;AS_VarDP=0|0|5|0;DP=13;QUALapprox=394;RAW_GT_COUNT=0,0,1;RAW_MQandDP=46800,13;VarDP=5 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 2|2:0,0,5,0:5:20:0|1:4119179_T_TCCC:394,234,314,27,20,0,324,284,33,354:4119179:0,0,0,5 +chrX 4119202 . T . . END=4119241 GT:DP:GQ:MIN_DP:PL 0/0:25:37:24:0,37,720 +chrX 4119242 . A . . END=4119242 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,824 +chrX 4119243 . T . . END=4119269 GT:DP:GQ:MIN_DP:PL 0/0:35:73:35:0,73,986 +chrX 4119270 . A . . END=4119270 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,755 +chrX 4119271 . T . . END=4119768 GT:DP:GQ:MIN_DP:PL 0/0:57:83:57:0,83,1070 +chrX 4119769 . G A, 1574.06 . AS_QUALapprox=|1588|0;AS_VarDP=0|49|0;DP=51;QUALapprox=1588;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1588,147,0,1588,147,1588:0,0,22,27 +chrX 4119770 . T . . END=4120021 GT:DP:GQ:MIN_DP:PL 0/0:57:82:57:0,82,1518 +chrX 4120022 . C CATCTATCT, 908.60 . AS_QUALapprox=|916|0;AS_VarDP=25|25|0;BaseQRankSum=-1.010;DP=67;MQRankSum=-0.960;QUALapprox=916;RAW_GT_COUNT=0,1,0;RAW_MQandDP=239200,67;ReadPosRankSum=0.437;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:25,25,0:50:99:916,0,905,992,980,1973:17,8,12,13 +chrX 4120023 . A . . END=4120064 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,120,1800 +chrX 4120065 . T . . END=4120065 GT:DP:GQ:MIN_DP:PL 0/0:71:0:71:0,0,1691 +chrX 4120066 . T . . END=4120072 GT:DP:GQ:MIN_DP:PL 0/0:71:99:71:0,120,1800 +chrX 4120073 . C . . END=4120073 GT:DP:GQ:MIN_DP:PL 0/0:71:0:71:0,0,1781 +chrX 4120074 . T . . END=4120396 GT:DP:GQ:MIN_DP:PL 0/0:60:63:60:0,63,1707 +chrX 4120397 . T C, 508.64 . AS_QUALapprox=|516|0;AS_VarDP=32|20|0;BaseQRankSum=-0.055;DP=56;MQRankSum=0.000;QUALapprox=516;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-0.169;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:32,20,0:52:99:516,0,920,612,980,1593:11,21,9,11 +chrX 4120398 . T . . END=4120701 GT:DP:GQ:MIN_DP:PL 0/0:38:33:34:0,33,888 +chrX 4120702 . G . . END=4120702 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,909 +chrX 4120703 . A . . END=4120703 GT:DP:GQ:MIN_DP:PL 0/0:36:83:36:0,83,1111 +chrX 4120704 . A . . END=4120705 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,890 +chrX 4120706 . A . . END=4120734 GT:DP:GQ:MIN_DP:PL 0/0:28:33:28:0,33,278 +chrX 4120735 . A T, 120.64 . AS_QUALapprox=|128|0;AS_VarDP=18|6|0;BaseQRankSum=-1.496;DP=28;MQRankSum=0.208;QUALapprox=128;RAW_GT_COUNT=0,1,0;RAW_MQandDP=87156,28;ReadPosRankSum=1.119;VarDP=24 GT:AD:DP:GQ:PL:SB 0/1:18,6,0:24:99:128,0,617,181,635,816:8,10,4,2 +chrX 4120736 . T . . END=4120736 GT:DP:GQ:MIN_DP:PL 0/0:25:54:25:0,54,810 +chrX 4120737 . AT A,ATTTTTT, 181.60 . AS_QUALapprox=|0|189|0;AS_VarDP=11|0|8|0;BaseQRankSum=-0.627;DP=29;MQRankSum=-0.715;QUALapprox=189;RAW_GT_COUNT=0,1,0;RAW_MQandDP=90756,29;ReadPosRankSum=0.151;VarDP=19 GT:AD:DP:GQ:PL:SB 0/2:11,0,8,0:19:99:189,232,728,0,462,611,247,731,557,803:6,5,4,4 +chrX 4120738 . T *,TATATA, 104.60 . AS_QUALapprox=|0|112|0;AS_VarDP=8|0|7|0;BaseQRankSum=0.135;DP=29;MQRankSum=0.045;QUALapprox=112;RAW_GT_COUNT=0,1,0;RAW_MQandDP=90756,29;ReadPosRankSum=1.555;VarDP=15 GT:AD:DP:GQ:PL:SB 0/2:8,0,7,0:15:99:112,135,752,0,294,286,156,608,313,602:4,4,3,4 +chrX 4120739 . T . . END=4120756 GT:DP:GQ:MIN_DP:PL 0/0:40:39:40:0,39,720 +chrX 4120757 . C . . END=4120757 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,527 +chrX 4120758 . T . . END=4120759 GT:DP:GQ:MIN_DP:PL 0/0:40:84:40:0,84,1260 +chrX 4120760 . G . . END=4120765 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,744 +chrX 4120766 . G . . END=4121349 GT:DP:GQ:MIN_DP:PL 0/0:59:55:59:0,55,973 +chrX 4121350 . A AT, 831.03 . AS_QUALapprox=|845|0;AS_VarDP=1|37|0;BaseQRankSum=-0.648;DP=47;MQRankSum=0.000;QUALapprox=845;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;ReadPosRankSum=-1.640;VarDP=38 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:1,37,0:38:90:0|1:4121350_A_AT:845,90,0,848,109,867:4121350:0,1,19,18 +chrX 4121351 . T . . END=4121693 GT:DP:GQ:MIN_DP:PL 0/0:47:44:47:0,44,1081 +chrX 4121694 . TTTTC T, 484.60 . AS_QUALapprox=|492|0;AS_VarDP=26|21|0;BaseQRankSum=0.377;DP=53;MQRankSum=0.000;QUALapprox=492;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=-3.137;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:26,21,0:47:99:492,0,989,570,1051,1622:16,10,6,15 +chrX 4121699 . T . . END=4121748 GT:DP:GQ:MIN_DP:PL 0/0:52:61:52:0,61,1277 +chrX 4121749 . C . . END=4121749 GT:DP:GQ:MIN_DP:PL 0/0:50:16:50:0,16,1239 +chrX 4121750 . T . . END=4121760 GT:DP:GQ:MIN_DP:PL 0/0:52:62:52:0,62,1221 +chrX 4121761 . A . . END=4121761 GT:DP:GQ:MIN_DP:PL 0/0:35:18:35:0,18,566 +chrX 4121762 . T . . END=4121788 GT:DP:GQ:MIN_DP:PL 0/0:29:69:29:0,69,770 +chrX 4121789 . C CTTCTTTCTTTCTTTCT, 1065.03 . AS_QUALapprox=|1079|0;AS_VarDP=0|24|0;DP=30;QUALapprox=1079;RAW_GT_COUNT=0,0,1;RAW_MQandDP=89007,30;VarDP=24 GT:AD:DP:GQ:PL:SB 1/1:0,24,0:24:72:1079,72,0,1080,72,1080:0,0,7,17 +chrX 4121790 . T . . END=4121853 GT:DP:GQ:MIN_DP:PL 0/0:29:39:28:0,39,585 +chrX 4121854 . C . . END=4121854 GT:DP:GQ:MIN_DP:PL 0/0:31:14:31:0,14,127 +chrX 4121855 . C . . END=4121899 GT:DP:GQ:MIN_DP:PL 0/0:21:25:20:0,25,450 +chrX 4121900 . CT C, 109.04 . AS_QUALapprox=|261|0;AS_VarDP=4|7|0;BaseQRankSum=-1.282;DP=44;MQRankSum=0.253;QUALapprox=261;RAW_GT_COUNT=0,1,0;RAW_MQandDP=88471,44;ReadPosRankSum=1.282;VarDP=11 GT:AD:DP:GQ:PL:SB 0/1:4,7,0:11:99:261,0,111,208,176,592:2,2,0,1 +chrX 4121902 . T . . END=4121902 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,615 +chrX 4121903 . T . . END=4121903 GT:DP:GQ:MIN_DP:PL 0/0:44:60:44:0,60,727 +chrX 4121904 . CTTTCTTTCTTTCTTT *,C,CCTTT,CCTTTCTTTCTTT, 65.03 . AS_QUALapprox=|0|214|198|0|0;AS_VarDP=0|0|0|0|0|0;DP=51;QUALapprox=214;RAW_GT_COUNT=0,1,0;RAW_MQandDP=108472,51;VarDP=5 GT:AD:DP:GQ:PL:SB 0/2:5,0,0,0,0,0:5:16:214,36,764,0,323,695,16,487,613,862,241,319,278,195,513,188,517,550,586,464,778:2,3,0,0 +chrX 4121920 . C . . END=4121922 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,598 +chrX 4121923 . T C, 87.04 . AS_QUALapprox=|222|0;AS_VarDP=16|7|0;BaseQRankSum=-1.822;DP=48;MQRankSum=-0.550;QUALapprox=222;RAW_GT_COUNT=0,1,0;RAW_MQandDP=103336,48;ReadPosRankSum=0.306;VarDP=23 GT:AD:DP:GQ:PL:SB 0/1:16,7,0:23:99:222,0,616,195,670,1017:7,9,0,1 +chrX 4121924 . C . . END=4121995 GT:DP:GQ:MIN_DP:PL 0/0:41:44:41:0,44,765 +chrX 4121996 . T . . END=4121996 GT:DP:GQ:MIN_DP:PL 0/0:41:19:41:0,19,1136 +chrX 4121997 . C . . END=4121998 GT:DP:GQ:MIN_DP:PL 0/0:41:87:41:0,87,1305 +chrX 4121999 . C . . END=4122001 GT:DP:GQ:MIN_DP:PL 0/0:40:10:40:0,10,1021 +chrX 4122002 . T . . END=4122003 GT:DP:GQ:MIN_DP:PL 0/0:40:87:40:0,87,1305 +chrX 4122004 . G . . END=4122004 GT:DP:GQ:MIN_DP:PL 0/0:38:10:38:0,10,1072 +chrX 4122005 . C . . END=4122014 GT:DP:GQ:MIN_DP:PL 0/0:36:30:34:0,30,992 +chrX 4122015 . A . . END=4122015 GT:DP:GQ:MIN_DP:PL 0/0:37:17:37:0,17,1078 +chrX 4122016 . G . . END=4123064 GT:DP:GQ:MIN_DP:PL 0/0:23:31:22:0,31,685 +chrX 4123065 . T . . END=4123066 GT:DP:GQ:MIN_DP:PL 0/0:23:0:23:0,0,542 +chrX 4123067 . G . . END=4123068 GT:DP:GQ:MIN_DP:PL 0/0:28:63:28:0,63,945 +chrX 4123069 . T . . END=4123069 GT:DP:GQ:MIN_DP:PL 0/0:27:0:27:0,0,382 +chrX 4123070 . G . . END=4123075 GT:DP:GQ:MIN_DP:PL 0/0:28:59:28:0,59,833 +chrX 4123076 . T . . END=4123076 GT:DP:GQ:MIN_DP:PL 0/0:26:0:26:0,0,268 +chrX 4123077 . G . . END=4123249 GT:DP:GQ:MIN_DP:PL 0/0:32:38:21:0,38,571 +chrX 4123250 . G A, 879.64 . AS_QUALapprox=|887|0;AS_VarDP=25|32|0;BaseQRankSum=2.038;DP=59;MQRankSum=0.000;QUALapprox=887;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-0.137;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:25,32,0:57:99:887,0,593,961,689,1650:16,9,19,13 +chrX 4123251 . T . . END=4123614 GT:DP:GQ:MIN_DP:PL 0/0:51:72:51:0,72,1280 +chrX 4123615 . T A, 599.64 . AS_QUALapprox=|607|0;AS_VarDP=20|21|0;BaseQRankSum=1.503;DP=44;MQRankSum=0.000;QUALapprox=607;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=-0.235;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:20,21,0:41:99:607,0,552,667,615,1282:12,8,9,12 +chrX 4123616 . A . . END=4124650 GT:DP:GQ:MIN_DP:PL 0/0:54:59:54:0,59,1235 +chrX 4124651 . T C, 2323.06 . AS_QUALapprox=|2337|0;AS_VarDP=0|73|0;DP=75;QUALapprox=2337;RAW_GT_COUNT=0,0,1;RAW_MQandDP=270000,75;VarDP=73 GT:AD:DP:GQ:PL:SB 1/1:0,73,0:73:99:2337,219,0,2337,219,2337:0,0,44,29 +chrX 4124652 . G . . END=4126025 GT:DP:GQ:MIN_DP:PL 0/0:55:78:55:0,78,1300 +chrX 4126026 . G A, 1952.06 . AS_QUALapprox=|1966|0;AS_VarDP=0|58|0;DP=62;QUALapprox=1966;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=58 GT:AD:DP:GQ:PL:SB 1/1:0,58,0:58:99:1966,174,0,1966,174,1966:0,0,37,21 +chrX 4126027 . T . . END=4126777 GT:DP:GQ:MIN_DP:PL 0/0:59:85:59:0,85,1449 +chrX 4126778 . A G, 2184.06 . AS_QUALapprox=|2198|0;AS_VarDP=0|67|0;DP=68;QUALapprox=2198;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;VarDP=67 GT:AD:DP:GQ:PL:SB 1/1:0,67,0:67:99:2198,201,0,2198,201,2198:0,0,38,29 +chrX 4126779 . C . . END=4127072 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,120,1800 +chrX 4127073 . T C, 2058.06 . AS_QUALapprox=|2072|0;AS_VarDP=0|64|0;DP=68;QUALapprox=2072;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;VarDP=64 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:2072,192,0,2072,192,2072:0,0,31,33 +chrX 4127074 . T . . END=4127322 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 4127323 . T C, 1650.06 . AS_QUALapprox=|1664|0;AS_VarDP=0|52|0;DP=52;QUALapprox=1664;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1664,155,0,1664,155,1664:0,0,32,20 +chrX 4127324 . T . . END=4127523 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,109,1697 +chrX 4127524 . C T, 1809.06 . AS_QUALapprox=|1823|0;AS_VarDP=0|60|0;DP=61;QUALapprox=1823;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:1823,178,0,1823,178,1823:0,0,30,30 +chrX 4127525 . A . . END=4127655 GT:DP:GQ:MIN_DP:PL 0/0:50:67:50:0,67,1291 +chrX 4127656 . T G, 1360.06 . AS_QUALapprox=|1374|0;AS_VarDP=0|41|0;DP=46;QUALapprox=1374;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;VarDP=41 GT:AD:DP:GQ:PL:SB 1/1:0,41,0:41:99:1374,123,0,1374,123,1374:0,0,18,23 +chrX 4127657 . C . . END=4128089 GT:DP:GQ:MIN_DP:PL 0/0:54:65:54:0,65,1214 +chrX 4128090 . T C, 1730.06 . AS_QUALapprox=|1744|0;AS_VarDP=1|57|0;BaseQRankSum=-0.602;DP=61;MQRankSum=0.000;QUALapprox=1744;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;ReadPosRankSum=0.478;VarDP=58 GT:AD:DP:GQ:PL:SB 1/1:1,57,0:58:99:1744,139,0,1747,170,1779:0,1,27,30 +chrX 4128091 . T . . END=4128157 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 4128158 . T C, 1970.06 . AS_QUALapprox=|1984|0;AS_VarDP=1|64|0;BaseQRankSum=-0.532;DP=67;MQRankSum=0.000;QUALapprox=1984;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;ReadPosRankSum=-0.507;VarDP=65 GT:AD:DP:GQ:PL:SB 1/1:1,64,0:65:99:1984,159,0,1987,191,2019:0,1,28,36 +chrX 4128159 . T . . END=4128534 GT:DP:GQ:MIN_DP:PL 0/0:55:87:55:0,87,1448 +chrX 4128535 . C T, 2038.06 . AS_QUALapprox=|2052|0;AS_VarDP=0|47|0;DP=47;QUALapprox=2052;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,47,0:47:99:0|1:4128535_C_T:2052,141,0,2052,141,2052:4128535:0,0,29,18 +chrX 4128536 . G . . END=4128556 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 4128557 . T C, 2386.06 . AS_QUALapprox=|2400|0;AS_VarDP=0|57|0;DP=58;QUALapprox=2400;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=57 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,57,0:57:99:0|1:4128535_C_T:2400,172,0,2400,172,2400:4128535:0,0,37,20 +chrX 4128558 . A . . END=4129077 GT:DP:GQ:MIN_DP:PL 0/0:53:86:53:0,86,1291 +chrX 4129078 . C T, 1738.06 . AS_QUALapprox=|1752|0;AS_VarDP=0|54|0;DP=55;QUALapprox=1752;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:1752,162,0,1752,162,1752:0,0,28,26 +chrX 4129079 . G . . END=4129203 GT:DP:GQ:MIN_DP:PL 0/0:54:96:54:0,96,1469 +chrX 4129204 . T C, 1489.06 . AS_QUALapprox=|1503|0;AS_VarDP=1|47|0;BaseQRankSum=1.945;DP=50;MQRankSum=0.000;QUALapprox=1503;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;ReadPosRankSum=0.866;VarDP=48 GT:AD:DP:GQ:PL:SB 1/1:1,47,0:48:99:1503,119,0,1506,141,1527:1,0,22,25 +chrX 4129205 . T . . END=4129251 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,117,1755 +chrX 4129252 . A T, 1385.06 . AS_QUALapprox=|1399|0;AS_VarDP=0|44|0;DP=47;QUALapprox=1399;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;VarDP=44 GT:AD:DP:GQ:PL:SB 1/1:0,44,0:44:99:1399,132,0,1399,132,1399:0,0,23,21 +chrX 4129253 . C . . END=4129498 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,107,1387 +chrX 4129499 . T A, 1713.06 . AS_QUALapprox=|1727|0;AS_VarDP=0|52|0;DP=53;QUALapprox=1727;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1727,156,0,1727,156,1727:0,0,32,20 +chrX 4129500 . T . . END=4129710 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 4129711 . C G, 2220.06 . AS_QUALapprox=|2234|0;AS_VarDP=0|66|0;DP=68;QUALapprox=2234;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;VarDP=66 GT:AD:DP:GQ:PL:SB 1/1:0,66,0:66:99:2234,199,0,2234,199,2234:0,0,33,33 +chrX 4129712 . A . . END=4129967 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 4129968 . A G, 1885.06 . AS_QUALapprox=|1899|0;AS_VarDP=0|57|0;DP=59;QUALapprox=1899;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1899,171,0,1899,171,1899:0,0,28,29 +chrX 4129969 . A . . END=4130015 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 4130016 . A G, 1712.06 . AS_QUALapprox=|1726|0;AS_VarDP=0|54|0;DP=58;QUALapprox=1726;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:1726,161,0,1726,161,1726:0,0,21,33 +chrX 4130017 . G . . END=4130396 GT:DP:GQ:MIN_DP:PL 0/0:61:71:61:0,71,1417 +chrX 4130397 . C G, 2350.06 . AS_QUALapprox=|2364|0;AS_VarDP=0|53|0;DP=53;QUALapprox=2364;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,53,0:53:99:0|1:4130397_C_G:2364,160,0,2364,160,2364:4130397:0,0,28,25 +chrX 4130398 . A . . END=4130405 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 4130406 . C T, 2408.06 . AS_QUALapprox=|2422|0;AS_VarDP=0|55|0;DP=56;QUALapprox=2422;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,55,0:55:99:0|1:4130397_C_G:2422,166,0,2422,166,2422:4130397:0,0,28,27 +chrX 4130407 . G . . END=4130735 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 4130736 . T A, 1803.06 . AS_QUALapprox=|1817|0;AS_VarDP=0|54|0;DP=57;QUALapprox=1817;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:1817,162,0,1817,162,1817:0,0,22,32 +chrX 4130737 . T . . END=4130812 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 4130813 . G T, 1951.06 . AS_QUALapprox=|1965|0;AS_VarDP=0|58|0;DP=59;QUALapprox=1965;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=58 GT:AD:DP:GQ:PL:SB 1/1:0,58,0:58:99:1965,174,0,1965,174,1965:0,0,29,29 +chrX 4130814 . G . . END=4131407 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 4131408 . G A, 1956.06 . AS_QUALapprox=|1970|0;AS_VarDP=0|61|0;DP=63;QUALapprox=1970;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=61 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:1970,182,0,1970,182,1970:0,0,21,40 +chrX 4131409 . T . . END=4131544 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,116,1599 +chrX 4131545 . A G, 1523.06 . AS_QUALapprox=|1537|0;AS_VarDP=0|49|0;DP=51;QUALapprox=1537;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1537,146,0,1537,146,1537:0,0,25,24 +chrX 4131546 . C . . END=4131840 GT:DP:GQ:MIN_DP:PL 0/0:49:97:49:0,97,1369 +chrX 4131841 . C T, 1809.06 . AS_QUALapprox=|1823|0;AS_VarDP=2|55|0;BaseQRankSum=4.201;DP=58;MQRankSum=0.000;QUALapprox=1823;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;ReadPosRankSum=1.541;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:2,55,0:57:99:1823,122,0,1828,165,1872:1,1,31,24 +chrX 4131842 . C . . END=4131975 GT:DP:GQ:MIN_DP:PL 0/0:53:88:53:0,88,1335 +chrX 4131976 . C G, 1339.05 . AS_QUALapprox=|1353|0;AS_VarDP=5|47|0;BaseQRankSum=1.724;DP=55;MQRankSum=1.383;QUALapprox=1353;RAW_GT_COUNT=0,0,1;RAW_MQandDP=193673,55;ReadPosRankSum=0.885;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:5,47,0:52:26:1353,26,0,1368,140,1482:2,3,25,22 +chrX 4131977 . C . . END=4133016 GT:DP:GQ:MIN_DP:PL 0/0:54:59:54:0,59,973 +chrX 4133017 . A C, 1227.95 . AS_QUALapprox=|1593|0;AS_VarDP=0|36|0;DP=43;QUALapprox=1593;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154800,43;VarDP=36 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,36,0:36:99:0|1:4133017_A_C:1593,109,0,1425,114,1396:4133017:0,0,16,14 +chrX 4133018 . T . . END=4133018 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,105,1575 +chrX 4133019 . A C, 1376.05 . AS_QUALapprox=|1593|0;AS_VarDP=0|36|0;DP=42;QUALapprox=1593;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151200,42;VarDP=36 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,36,0:36:99:0|1:4133017_A_C:1593,109,0,1497,126,1590:4133017:0,0,16,14 +chrX 4133020 . T . . END=4133020 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,105,1575 +chrX 4133021 . A C, 54.64 . AS_QUALapprox=|62|0;AS_VarDP=32|5|0;BaseQRankSum=0.971;DP=40;MQRankSum=0.000;QUALapprox=62;RAW_GT_COUNT=0,1,0;RAW_MQandDP=144000,40;ReadPosRankSum=1.712;VarDP=37 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:32,5,0:37:62:0|1:4133017_A_C:62,0,904,161,985,1325:4133017:17,15,3,1 +chrX 4133022 . T . . END=4133656 GT:DP:GQ:MIN_DP:PL 0/0:48:85:48:0,85,1261 +chrX 4133657 . T . . END=4133657 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,1126 +chrX 4133658 . C CT, 887.03 . AS_QUALapprox=|901|0;AS_VarDP=0|37|0;DP=45;QUALapprox=901;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162000,45;VarDP=37 GT:AD:DP:GQ:PL:SB 1/1:0,37,0:37:99:901,111,0,901,111,901:0,0,23,14 +chrX 4133659 . T . . END=4133698 GT:DP:GQ:MIN_DP:PL 0/0:40:54:39:0,54,858 +chrX 4133699 . G A, 1378.06 . AS_QUALapprox=|1392|0;AS_VarDP=0|41|0;DP=43;QUALapprox=1392;RAW_GT_COUNT=0,0,1;RAW_MQandDP=152800,43;VarDP=41 GT:AD:DP:GQ:PL:SB 1/1:0,41,0:41:99:1392,123,0,1392,123,1392:0,0,21,20 +chrX 4133700 . A . . END=4134501 GT:DP:GQ:MIN_DP:PL 0/0:54:78:54:0,78,1142 +chrX 4134502 . A G, 1842.06 . AS_QUALapprox=|1856|0;AS_VarDP=0|56|0;DP=57;QUALapprox=1856;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1856,168,0,1856,168,1856:0,0,25,31 +chrX 4134503 . C . . END=4134684 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,108,1546 +chrX 4134685 . C G, 1376.06 . AS_QUALapprox=|1390|0;AS_VarDP=0|42|0;DP=44;QUALapprox=1390;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158400,44;VarDP=42 GT:AD:DP:GQ:PL:SB 1/1:0,42,0:42:99:1390,126,0,1390,126,1390:0,0,24,18 +chrX 4134686 . T . . END=4135460 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,105,1394 +chrX 4135461 . G A, 1568.06 . AS_QUALapprox=|1582|0;AS_VarDP=0|47|0;DP=48;QUALapprox=1582;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1582,141,0,1582,141,1582:0,0,26,21 +chrX 4135462 . C . . END=4137222 GT:DP:GQ:MIN_DP:PL 0/0:53:67:53:0,67,1166 +chrX 4137223 . G A, 1492.06 . AS_QUALapprox=|1506|0;AS_VarDP=0|45|0;DP=48;QUALapprox=1506;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=45 GT:AD:DP:GQ:PL:SB 1/1:0,45,0:45:99:1506,135,0,1506,135,1506:0,0,26,19 +chrX 4137224 . A . . END=4137477 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 4137478 . T G, 2288.06 . AS_QUALapprox=|2302|0;AS_VarDP=0|69|0;DP=70;QUALapprox=2302;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;VarDP=69 GT:AD:DP:GQ:PL:SB 1/1:0,69,0:69:99:2302,206,0,2302,206,2302:0,0,41,28 +chrX 4137479 . G . . END=4137928 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1765 +chrX 4137929 . TA T, 2039.03 . AS_QUALapprox=|2053|0;AS_VarDP=0|63|0;DP=64;QUALapprox=2053;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=63 GT:AD:DP:GQ:PL:SB 1/1:0,63,0:63:99:2053,190,0,2053,190,2053:0,0,31,32 +chrX 4137931 . A . . END=4139059 GT:DP:GQ:MIN_DP:PL 0/0:60:81:60:0,81,1549 +chrX 4139060 . A AT, 753.03 . AS_QUALapprox=|767|0;AS_VarDP=0|33|0;DP=52;QUALapprox=767;RAW_GT_COUNT=0,0,1;RAW_MQandDP=184625,52;VarDP=33 GT:AD:DP:GQ:PL:SB 1/1:0,33,0:33:98:767,98,0,767,98,767:0,0,16,17 +chrX 4139061 . T . . END=4140343 GT:DP:GQ:MIN_DP:PL 0/0:59:55:59:0,55,1112 +chrX 4140344 . A C, 1985.06 . AS_QUALapprox=|1999|0;AS_VarDP=0|65|0;DP=68;QUALapprox=1999;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;VarDP=65 GT:AD:DP:GQ:PL:SB 1/1:0,65,0:65:99:1999,195,0,1999,195,1999:0,0,31,34 +chrX 4140345 . G . . END=4140379 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 4140380 . T C, 2113.06 . AS_QUALapprox=|2127|0;AS_VarDP=0|70|0;DP=75;QUALapprox=2127;RAW_GT_COUNT=0,0,1;RAW_MQandDP=270000,75;VarDP=70 GT:AD:DP:GQ:PL:SB 1/1:0,70,0:70:99:2127,210,0,2127,210,2127:0,0,34,36 +chrX 4140381 . A . . END=4141324 GT:DP:GQ:MIN_DP:PL 0/0:58:70:58:0,70,1296 +chrX 4141325 . T C, 1509.06 . AS_QUALapprox=|1523|0;AS_VarDP=0|49|0;DP=50;QUALapprox=1523;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1523,146,0,1523,146,1523:0,0,23,26 +chrX 4141326 . C . . END=4142005 GT:DP:GQ:MIN_DP:PL 0/0:56:65:56:0,65,1092 +chrX 4142006 . C T, 1624.06 . AS_QUALapprox=|1638|0;AS_VarDP=0|50|0;DP=53;QUALapprox=1638;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1638,150,0,1638,150,1638:0,0,20,30 +chrX 4142007 . G . . END=4142560 GT:DP:GQ:MIN_DP:PL 0/0:52:68:52:0,68,1086 +chrX 4142561 . C T, 1518.06 . AS_QUALapprox=|1532|0;AS_VarDP=0|49|0;DP=52;QUALapprox=1532;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1532,146,0,1532,146,1532:0,0,33,16 +chrX 4142562 . A . . END=4146235 GT:DP:GQ:MIN_DP:PL 0/0:55:63:55:0,63,948 +chrX 4146236 . G C, 1732.06 . AS_QUALapprox=|1746|0;AS_VarDP=0|56|0;DP=58;QUALapprox=1746;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1746,168,0,1746,168,1746:0,0,31,25 +chrX 4146237 . A . . END=4146908 GT:DP:GQ:MIN_DP:PL 0/0:53:53:53:0,53,1057 +chrX 4146909 . C CT, 1089.03 . AS_QUALapprox=|1103|0;AS_VarDP=1|39|0;BaseQRankSum=-0.250;DP=44;MQRankSum=0.000;QUALapprox=1103;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158400,44;ReadPosRankSum=-0.737;VarDP=40 GT:AD:DP:GQ:PL:SB 1/1:1,39,0:40:90:1103,90,0,1106,117,1133:1,0,18,21 +chrX 4146910 . T . . END=4147247 GT:DP:GQ:MIN_DP:PL 0/0:54:75:54:0,75,1435 +chrX 4147248 . T C, 1494.06 . AS_QUALapprox=|1508|0;AS_VarDP=0|46|0;DP=46;QUALapprox=1508;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1508,137,0,1508,137,1508:0,0,19,27 +chrX 4147249 . G . . END=4147550 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,115,1463 +chrX 4147551 . A G, 1787.06 . AS_QUALapprox=|1801|0;AS_VarDP=0|56|0;DP=60;QUALapprox=1801;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1801,168,0,1801,168,1801:0,0,22,34 +chrX 4147552 . G . . END=4148837 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,100,1354 +chrX 4148838 . C T, 1648.06 . AS_QUALapprox=|1662|0;AS_VarDP=0|51|0;DP=52;QUALapprox=1662;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1662,153,0,1662,153,1662:0,0,26,25 +chrX 4148839 . C . . END=4149086 GT:DP:GQ:MIN_DP:PL 0/0:51:87:51:0,87,1305 +chrX 4149087 . TACACAC T, 1202.03 . AS_QUALapprox=|1216|0;AS_VarDP=0|27|0;DP=43;QUALapprox=1216;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154800,43;VarDP=27 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,27,0:27:82:0|1:4149087_TACACAC_T:1216,82,0,1216,82,1216:4149087:0,0,12,15 +chrX 4149094 . A . . END=4149134 GT:DP:GQ:MIN_DP:PL 0/0:43:51:43:0,51,765 +chrX 4149135 . C . . END=4149135 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,1182 +chrX 4149136 . A . . END=4149136 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,111,1665 +chrX 4149137 . C . . END=4149137 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,1166 +chrX 4149138 . A . . END=4149138 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,111,1665 +chrX 4149139 . C . . END=4149139 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,1093 +chrX 4149140 . A . . END=4149140 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,111,1665 +chrX 4149141 . C G, 2055.06 . AS_QUALapprox=|2069|0;AS_VarDP=0|46|0;DP=47;QUALapprox=2069;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,46,0:46:99:0|1:4149087_TACACAC_T:2069,139,0,2069,139,2069:4149087:0,0,22,24 +chrX 4149142 . A . . END=4149142 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,105,1575 +chrX 4149143 . C G, 2094.06 . AS_QUALapprox=|2108|0;AS_VarDP=0|47|0;DP=48;QUALapprox=2108;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,47,0:47:99:0|1:4149087_TACACAC_T:2108,142,0,2108,142,2108:4149087:0,0,23,24 +chrX 4149144 . A . . END=4149144 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,108,1620 +chrX 4149145 . G . . END=4149145 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,1201 +chrX 4149146 . A . . END=4149148 GT:DP:GQ:MIN_DP:PL 0/0:46:35:45:0,35,1282 +chrX 4149149 . G . . END=4149149 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,1121 +chrX 4149150 . A . . END=4149150 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,105,1575 +chrX 4149151 . T . . END=4149153 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,862 +chrX 4149154 . A . . END=4149154 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,105,1575 +chrX 4149155 . T . . END=4149155 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,997 +chrX 4149156 . A . . END=4149156 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,105,1575 +chrX 4149157 . G . . END=4149157 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,1135 +chrX 4149158 . A . . END=4149158 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,99,1485 +chrX 4149159 . T . . END=4149159 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,912 +chrX 4149160 . A . . END=4149160 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,99,1485 +chrX 4149161 . G . . END=4149161 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,927 +chrX 4149162 . A . . END=4149162 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,99,1485 +chrX 4149163 . T . . END=4149163 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,898 +chrX 4149164 . A . . END=4149164 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,99,1485 +chrX 4149165 . G . . END=4149170 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,984 +chrX 4149171 . A . . END=4149184 GT:DP:GQ:MIN_DP:PL 0/0:48:93:48:0,93,1395 +chrX 4149185 . A . . END=4149188 GT:DP:GQ:MIN_DP:PL 0/0:49:5:49:0,5,1279 +chrX 4149189 . A . . END=4149189 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,120,1800 +chrX 4149190 . T . . END=4149190 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,1250 +chrX 4149191 . GCA G, 2048.03 . AS_QUALapprox=|2062|0;AS_VarDP=0|49|0;DP=51;QUALapprox=2062;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,49,0:49:99:0|1:4149087_TACACAC_T:2062,148,0,2062,148,2062:4149087:0,0,26,23 +chrX 4149194 . C . . END=4149314 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,113,1423 +chrX 4149315 . T C, 681.64 . AS_QUALapprox=|689|0;AS_VarDP=20|25|0;BaseQRankSum=0.672;DP=47;MQRankSum=0.000;QUALapprox=689;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=-0.743;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:20,25,0:45:99:689,0,519,749,593,1342:12,8,12,13 +chrX 4149316 . T . . END=4153084 GT:DP:GQ:MIN_DP:PL 0/0:53:69:53:0,69,1167 +chrX 4153085 . C A, 1675.06 . AS_QUALapprox=|1689|0;AS_VarDP=1|54|0;BaseQRankSum=-0.541;DP=55;MQRankSum=0.000;QUALapprox=1689;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;ReadPosRankSum=1.733;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:1,54,0:55:99:1689,132,0,1692,162,1722:0,1,24,30 +chrX 4153086 . A . . END=4154840 GT:DP:GQ:MIN_DP:PL 0/0:56:94:56:0,94,1254 +chrX 4154841 . A T, 1788.06 . AS_QUALapprox=|1802|0;AS_VarDP=0|54|0;DP=55;QUALapprox=1802;RAW_GT_COUNT=0,0,1;RAW_MQandDP=197425,55;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:1802,162,0,1802,162,1802:0,0,26,28 +chrX 4154842 . T . . END=4155275 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,112,1628 +chrX 4155276 . C T, 1504.06 . AS_QUALapprox=|1518|0;AS_VarDP=2|48|0;BaseQRankSum=3.118;DP=51;MQRankSum=0.000;QUALapprox=1518;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;ReadPosRankSum=0.619;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:2,48,0:50:99:1518,129,0,1523,143,1537:2,0,19,29 +chrX 4155277 . C . . END=4155862 GT:DP:GQ:MIN_DP:PL 0/0:54:74:54:0,74,1307 +chrX 4155863 . A C, 660.64 . AS_QUALapprox=|668|0;AS_VarDP=20|24|0;BaseQRankSum=-0.130;DP=45;MQRankSum=0.000;QUALapprox=668;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=0.849;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:20,24,0:44:99:668,0,517,728,589,1317:9,11,12,12 +chrX 4155864 . T . . END=4158089 GT:DP:GQ:MIN_DP:PL 0/0:54:67:54:0,67,1162 +chrX 4158090 . A G, 666.64 . AS_QUALapprox=|674|0;AS_VarDP=23|27|0;BaseQRankSum=-2.185;DP=52;MQRankSum=0.000;QUALapprox=674;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=0.691;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:23,27,0:50:99:674,0,615,742,696,1438:13,10,15,12 +chrX 4158091 . T . . END=4159117 GT:DP:GQ:MIN_DP:PL 0/0:59:95:59:0,95,1375 +chrX 4159118 . A T, 659.64 . AS_QUALapprox=|667|0;AS_VarDP=27|28|0;BaseQRankSum=-0.747;DP=64;MQRankSum=0.000;QUALapprox=667;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=-0.061;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:27,28,0:55:99:667,0,730,759,789,1560:11,15,16,12 +chrX 4159119 . A . . END=4161722 GT:DP:GQ:MIN_DP:PL 0/0:53:53:53:0,53,1027 +chrX 4161723 . T TTCTC, 1985.03 . AS_QUALapprox=|1999|0;AS_VarDP=0|46|0;DP=50;QUALapprox=1999;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165491,50;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,46,0:46:99:0|1:4161723_T_TTCTC:1999,140,0,1999,140,1999:4161723:0,0,19,27 +chrX 4161724 . T . . END=4161791 GT:DP:GQ:MIN_DP:PL 0/0:42:54:42:0,54,810 +chrX 4161792 . TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCCTTCCTTCCTTCCTTCC T, 1896.03 . AS_QUALapprox=|1910|0;AS_VarDP=0|43|0;DP=44;QUALapprox=1910;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126309,44;VarDP=43 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,43,0:43:99:0|1:4161723_T_TTCTC:1910,129,0,1910,129,1910:4161723:0,0,16,27 +chrX 4161841 . T . . END=4161870 GT:DP:GQ:MIN_DP:PL 0/0:37:50:37:0,50,988 +chrX 4161871 . C . . END=4161871 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,1048 +chrX 4161872 . C . . END=4161878 GT:DP:GQ:MIN_DP:PL 0/0:40:36:39:0,36,1121 +chrX 4161879 . C . . END=4161879 GT:DP:GQ:MIN_DP:PL 0/0:41:19:41:0,19,1167 +chrX 4161880 . C . . END=4163768 GT:DP:GQ:MIN_DP:PL 0/0:40:33:39:0,33,1088 +chrX 4163769 . A G, 2140.06 . AS_QUALapprox=|2154|0;AS_VarDP=0|65|0;DP=65;QUALapprox=2154;RAW_GT_COUNT=0,0,1;RAW_MQandDP=231489,65;VarDP=65 GT:AD:DP:GQ:PL:SB 1/1:0,65,0:65:99:2154,195,0,2154,195,2154:0,0,27,38 +chrX 4163770 . T . . END=4164017 GT:DP:GQ:MIN_DP:PL 0/0:50:83:50:0,83,1320 +chrX 4164018 . A C, 1342.06 . AS_QUALapprox=|1356|0;AS_VarDP=0|42|0;DP=43;QUALapprox=1356;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154800,43;VarDP=42 GT:AD:DP:GQ:PL:SB 1/1:0,42,0:42:99:1356,125,0,1356,125,1356:0,0,24,18 +chrX 4164019 . C . . END=4164792 GT:DP:GQ:MIN_DP:PL 0/0:62:75:62:0,75,1267 +chrX 4164793 . C T, 1649.06 . AS_QUALapprox=|1663|0;AS_VarDP=0|50|0;DP=54;QUALapprox=1663;RAW_GT_COUNT=0,0,1;RAW_MQandDP=193825,54;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1663,150,0,1663,150,1663:0,0,21,29 +chrX 4164794 . G . . END=4164934 GT:DP:GQ:MIN_DP:PL 0/0:48:97:48:0,97,1413 +chrX 4164935 . A C, 1520.06 . AS_QUALapprox=|1534|0;AS_VarDP=0|47|0;DP=48;QUALapprox=1534;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172116,48;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1534,141,0,1534,141,1534:0,0,26,21 +chrX 4164936 . C . . END=4165059 GT:DP:GQ:MIN_DP:PL 0/0:51:78:51:0,78,1324 +chrX 4165060 . CAA C,CA, 566.02 . AS_QUALapprox=|404|354|0;AS_VarDP=2|15|12|0;BaseQRankSum=0.764;DP=48;MQRankSum=-0.294;QUALapprox=583;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169987,48;ReadPosRankSum=-1.487;VarDP=29 GT:AD:DP:GQ:PL:SB 1/2:2,15,12,0:29:99:583,179,257,269,0,229,555,265,305,603:0,2,15,12 +chrX 4165063 . A . . END=4165137 GT:DP:GQ:MIN_DP:PL 0/0:47:97:47:0,97,1292 +chrX 4165138 . G C, 1627.06 . AS_QUALapprox=|1641|0;AS_VarDP=1|51|0;BaseQRankSum=-0.373;DP=53;MQRankSum=0.000;QUALapprox=1641;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;ReadPosRankSum=-0.400;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:1,51,0:52:99:1641,121,0,1644,153,1676:1,0,32,19 +chrX 4165139 . T . . END=4165328 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 4165329 . TTTA T, 2324.03 . AS_QUALapprox=|2338|0;AS_VarDP=0|54|0;DP=64;QUALapprox=2338;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:2338,162,0,2338,162,2338:0,0,27,27 +chrX 4165333 . T . . END=4165505 GT:DP:GQ:MIN_DP:PL 0/0:64:41:64:0,41,1746 +chrX 4165506 . C T, 1892.06 . AS_QUALapprox=|1906|0;AS_VarDP=0|57|0;DP=58;QUALapprox=1906;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208336,58;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1906,171,0,1906,171,1906:0,0,34,23 +chrX 4165507 . T . . END=4165537 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 4165538 . A T, 2155.06 . AS_QUALapprox=|2169|0;AS_VarDP=0|64|0;DP=66;QUALapprox=2169;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237136,66;VarDP=64 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:2169,192,0,2169,192,2169:0,0,42,22 +chrX 4165539 . T . . END=4165570 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 4165571 . GAA G, 2242.03 . AS_QUALapprox=|2256|0;AS_VarDP=0|62|0;DP=73;QUALapprox=2256;RAW_GT_COUNT=0,0,1;RAW_MQandDP=261652,73;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:0,62,0:62:99:2256,187,0,2256,187,2256:0,0,39,23 +chrX 4165574 . A . . END=4165582 GT:DP:GQ:MIN_DP:PL 0/0:73:99:73:0,120,1800 +chrX 4165583 . A . . END=4165583 GT:DP:GQ:MIN_DP:PL 0/0:75:0:75:0,0,1554 +chrX 4165584 . A . . END=4166549 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 4166550 . ATTT A, 2167.03 . AS_QUALapprox=|2181|0;AS_VarDP=0|49|0;DP=62;QUALapprox=2181;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:2181,148,0,2181,148,2181:0,0,21,28 +chrX 4166554 . T . . END=4166846 GT:DP:GQ:MIN_DP:PL 0/0:58:88:58:0,88,1534 +chrX 4166847 . G A, 1787.06 . AS_QUALapprox=|1801|0;AS_VarDP=0|56|0;DP=58;QUALapprox=1801;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1801,167,0,1801,167,1801:0,0,27,29 +chrX 4166848 . T . . END=4167625 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,102,1613 +chrX 4167626 . A T, 2089.06 . AS_QUALapprox=|2103|0;AS_VarDP=0|66|0;DP=67;QUALapprox=2103;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=66 GT:AD:DP:GQ:PL:SB 1/1:0,66,0:66:99:2103,197,0,2103,197,2103:0,0,31,35 +chrX 4167627 . C . . END=4167779 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,106,1622 +chrX 4167780 . G A, 1932.06 . AS_QUALapprox=|1946|0;AS_VarDP=0|59|0;DP=61;QUALapprox=1946;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1946,177,0,1946,177,1946:0,0,28,31 +chrX 4167781 . C . . END=4168172 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 4168173 . G T, 1880.06 . AS_QUALapprox=|1894|0;AS_VarDP=0|59|0;DP=59;QUALapprox=1894;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1894,176,0,1894,176,1894:0,0,30,29 +chrX 4168174 . T . . END=4168756 GT:DP:GQ:MIN_DP:PL 0/0:66:93:66:0,93,1752 +chrX 4168757 . C T, 2090.06 . AS_QUALapprox=|2104|0;AS_VarDP=0|66|0;DP=68;QUALapprox=2104;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;VarDP=66 GT:AD:DP:GQ:PL:SB 1/1:0,66,0:66:99:2104,197,0,2104,197,2104:0,0,38,28 +chrX 4168758 . G . . END=4169345 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 4169346 . C CA, 2168.03 . AS_QUALapprox=|2182|0;AS_VarDP=0|54|0;DP=54;QUALapprox=2182;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:2182,163,0,2182,163,2182:0,0,35,19 +chrX 4169347 . T . . END=4169890 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,114,1577 +chrX 4169891 . T A, 2433.06 . AS_QUALapprox=|2447|0;AS_VarDP=1|75|0;BaseQRankSum=2.612;DP=78;MQRankSum=0.000;QUALapprox=2447;RAW_GT_COUNT=0,0,1;RAW_MQandDP=280800,78;ReadPosRankSum=-1.414;VarDP=76 GT:AD:DP:GQ:PL:SB 1/1:1,75,0:76:99:2447,218,0,2449,225,2456:0,1,36,39 +chrX 4169892 . C . . END=4171210 GT:DP:GQ:MIN_DP:PL 0/0:54:72:54:0,72,1191 +chrX 4171211 . C T, 1714.06 . AS_QUALapprox=|1728|0;AS_VarDP=0|51|0;DP=51;QUALapprox=1728;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1728,153,0,1728,153,1728:0,0,24,27 +chrX 4171212 . T . . END=4172640 GT:DP:GQ:MIN_DP:PL 0/0:56:98:56:0,98,1300 +chrX 4172641 . C A, 1753.06 . AS_QUALapprox=|1767|0;AS_VarDP=0|56|0;DP=56;QUALapprox=1767;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1767,167,0,1767,167,1767:0,0,29,27 +chrX 4172642 . A . . END=4173130 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,104,1229 +chrX 4173131 . G A, 1250.06 . AS_QUALapprox=|1264|0;AS_VarDP=0|40|0;DP=41;QUALapprox=1264;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147600,41;VarDP=40 GT:AD:DP:GQ:PL:SB 1/1:0,40,0:40:99:1264,120,0,1264,120,1264:0,0,17,23 +chrX 4173132 . A . . END=4173518 GT:DP:GQ:MIN_DP:PL 0/0:54:86:54:0,86,1319 +chrX 4173519 . T G, 1681.06 . AS_QUALapprox=|1695|0;AS_VarDP=1|54|0;BaseQRankSum=-0.512;DP=56;MQRankSum=0.000;QUALapprox=1695;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;ReadPosRankSum=1.449;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:1,54,0:55:99:1695,130,0,1698,162,1730:0,1,34,20 +chrX 4173520 . C . . END=4173937 GT:DP:GQ:MIN_DP:PL 0/0:57:96:57:0,96,1643 +chrX 4173938 . G A, 1728.06 . AS_QUALapprox=|1742|0;AS_VarDP=0|53|0;DP=54;QUALapprox=1742;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1742,159,0,1742,159,1742:0,0,26,27 +chrX 4173939 . C . . END=4174028 GT:DP:GQ:MIN_DP:PL 0/0:54:74:54:0,74,1529 +chrX 4174029 . CT C, 1079.03 . AS_QUALapprox=|1093|0;AS_VarDP=1|39|0;BaseQRankSum=-0.393;DP=48;MQRankSum=0.000;QUALapprox=1093;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;ReadPosRankSum=1.213;VarDP=40 GT:AD:DP:GQ:PL:SB 1/1:1,39,0:40:99:1093,111,0,1095,117,1102:1,0,18,21 +chrX 4174031 . T . . END=4174372 GT:DP:GQ:MIN_DP:PL 0/0:50:54:50:0,54,1259 +chrX 4174373 . C T, 584.64 . AS_QUALapprox=|592|0;AS_VarDP=21|23|0;BaseQRankSum=-0.989;DP=45;MQRankSum=0.000;QUALapprox=592;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=0.764;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:21,23,0:44:99:592,0,568,655,637,1292:12,9,8,15 +chrX 4174374 . A . . END=4174654 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,102,1310 +chrX 4174655 . C . . END=4174655 GT:DP:GQ:MIN_DP:PL 0/0:48:5:48:0,5,1330 +chrX 4174656 . C . . END=4174696 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,99,1485 +chrX 4174697 . C T, 1456.06 . AS_QUALapprox=|1470|0;AS_VarDP=1|44|0;BaseQRankSum=2.938;DP=47;MQRankSum=-0.680;QUALapprox=1470;RAW_GT_COUNT=0,0,1;RAW_MQandDP=146696,47;ReadPosRankSum=-1.272;VarDP=45 GT:AD:DP:GQ:PL:SB 1/1:1,44,0:45:99:1470,125,0,1472,132,1479:1,0,27,17 +chrX 4174698 . G . . END=4174795 GT:DP:GQ:MIN_DP:PL 0/0:42:89:42:0,89,1062 +chrX 4174796 . T A, 1190.06 . AS_QUALapprox=|1204|0;AS_VarDP=0|38|0;DP=39;QUALapprox=1204;RAW_GT_COUNT=0,0,1;RAW_MQandDP=119165,39;VarDP=38 GT:AD:DP:GQ:PL:SB 1/1:0,38,0:38:99:1204,113,0,1204,113,1204:0,0,23,15 +chrX 4174797 . C . . END=4174864 GT:DP:GQ:MIN_DP:PL 0/0:48:43:48:0,43,1062 +chrX 4174865 . C G, 1562.06 . AS_QUALapprox=|1576|0;AS_VarDP=0|50|0;DP=53;QUALapprox=1576;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1576,148,0,1576,148,1576:0,0,30,20 +chrX 4174866 . A . . END=4175624 GT:DP:GQ:MIN_DP:PL 0/0:59:86:59:0,86,1232 +chrX 4175625 . G A, 1755.06 . AS_QUALapprox=|1769|0;AS_VarDP=0|53|0;DP=54;QUALapprox=1769;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1769,159,0,1769,159,1769:0,0,22,31 +chrX 4175626 . A . . END=4176303 GT:DP:GQ:MIN_DP:PL 0/0:60:89:60:0,89,1651 +chrX 4176304 . T C, 2216.06 . AS_QUALapprox=|2230|0;AS_VarDP=0|73|0;DP=75;QUALapprox=2230;RAW_GT_COUNT=0,0,1;RAW_MQandDP=270000,75;VarDP=73 GT:AD:DP:GQ:PL:SB 1/1:0,73,0:73:99:2230,217,0,2230,217,2230:0,0,38,35 +chrX 4176305 . G . . END=4176651 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,110,1513 +chrX 4176652 . C T, 1837.06 . AS_QUALapprox=|1851|0;AS_VarDP=0|56|0;DP=57;QUALapprox=1851;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1851,168,0,1851,168,1851:0,0,22,34 +chrX 4176653 . G . . END=4178741 GT:DP:GQ:MIN_DP:PL 0/0:57:59:57:0,59,1048 +chrX 4178742 . A G, 1653.06 . AS_QUALapprox=|1667|0;AS_VarDP=0|51|0;DP=52;QUALapprox=1667;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1667,153,0,1667,153,1667:0,0,28,23 +chrX 4178743 . G . . END=4179472 GT:DP:GQ:MIN_DP:PL 0/0:57:50:57:0,50,1247 +chrX 4179473 . G . . END=4179473 GT:DP:GQ:MIN_DP:PL 0/0:44:3:44:0,3,1181 +chrX 4179474 . T . . END=4179476 GT:DP:GQ:MIN_DP:PL 0/0:44:58:44:0,58,1210 +chrX 4179477 . GTT G,GT, 868.03 . AS_QUALapprox=|99|882|0;AS_VarDP=0|3|33|0;DP=41;QUALapprox=882;RAW_GT_COUNT=0,0,1;RAW_MQandDP=145849,41;VarDP=36 GT:AD:DP:GQ:PL:SB 2/2:0,3,33,0:36:29:882,787,783,107,29,0,874,789,104,871:0,0,24,12 +chrX 4179480 . T . . END=4180460 GT:DP:GQ:MIN_DP:PL 0/0:63:75:63:0,75,1233 +chrX 4180461 . A G, 1893.06 . AS_QUALapprox=|1907|0;AS_VarDP=0|61|0;DP=64;QUALapprox=1907;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=61 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:1907,181,0,1907,181,1907:0,0,25,36 +chrX 4180462 . C . . END=4181482 GT:DP:GQ:MIN_DP:PL 0/0:61:60:61:0,60,900 +chrX 4181483 . C . . END=4181483 GT:DP:GQ:MIN_DP:PL 0/0:38:9:38:0,9,981 +chrX 4181484 . A T, 1332.06 . AS_QUALapprox=|1346|0;AS_VarDP=2|40|0;DP=43;MQRankSum=-0.240;QUALapprox=1346;RAW_GT_COUNT=0,0,1;RAW_MQandDP=152225,43;VarDP=42 GT:AD:DP:GQ:PL:SB 1/1:2,40,0:42:84:1346,84,0,1352,118,1385:0,2,26,14 +chrX 4181485 . CAA C,CA, 1224.02 . AS_QUALapprox=|966|1123|0;AS_VarDP=2|13|16|0;DP=59;MQRankSum=-0.283;QUALapprox=1241;RAW_GT_COUNT=0,0,1;RAW_MQandDP=202946,59;VarDP=31 GT:AD:DP:GQ:PL:SB 1/2:2,13,16,0:31:99:1241,275,333,201,0,118,923,380,248,918:0,2,19,10 +chrX 4181488 . A . . END=4181659 GT:DP:GQ:MIN_DP:PL 0/0:54:98:54:0,98,1196 +chrX 4181660 . C T, 1366.06 . AS_QUALapprox=|1380|0;AS_VarDP=0|42|0;DP=44;QUALapprox=1380;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158400,44;VarDP=42 GT:AD:DP:GQ:PL:SB 1/1:0,42,0:42:99:1380,126,0,1380,126,1380:0,0,19,23 +chrX 4181661 . G . . END=4182527 GT:DP:GQ:MIN_DP:PL 0/0:53:73:53:0,73,1097 +chrX 4182528 . TCTGA T, 2091.03 . AS_QUALapprox=|2105|0;AS_VarDP=0|47|0;DP=50;QUALapprox=2105;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:2105,142,0,2105,142,2105:0,0,26,21 +chrX 4182533 . C . . END=4182776 GT:DP:GQ:MIN_DP:PL 0/0:53:89:53:0,89,1370 +chrX 4182777 . GT G, 543.02 . AS_QUALapprox=|557|0;AS_VarDP=3|31|0;BaseQRankSum=-0.629;DP=58;MQRankSum=3.318;QUALapprox=557;RAW_GT_COUNT=0,0,1;RAW_MQandDP=206800,58;ReadPosRankSum=0.935;VarDP=34 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:3,31,0:34:37:0|1:4182777_GT_G:557,37,0,566,91,620:4182777:2,1,12,19 +chrX 4182779 . T G, 543.06 . AS_QUALapprox=|557|0;AS_VarDP=3|31|0;BaseQRankSum=-1.255;DP=58;MQRankSum=3.318;QUALapprox=557;RAW_GT_COUNT=0,0,1;RAW_MQandDP=206800,58;ReadPosRankSum=1.336;VarDP=34 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:3,31,0:34:37:0|1:4182777_GT_G:557,37,0,566,91,620:4182777:2,1,12,19 +chrX 4182780 . T . . END=4186200 GT:DP:GQ:MIN_DP:PL 0/0:55:23:52:0,23,1327 +chrX 4186201 . A G, 1937.06 . AS_QUALapprox=|1951|0;AS_VarDP=0|59|0;DP=60;QUALapprox=1951;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1951,177,0,1951,177,1951:0,0,29,30 +chrX 4186202 . T . . END=4187978 GT:DP:GQ:MIN_DP:PL 0/0:57:95:57:0,95,1330 +chrX 4187979 . C T, 1741.06 . AS_QUALapprox=|1755|0;AS_VarDP=0|53|0;DP=54;QUALapprox=1755;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1755,159,0,1755,159,1755:0,0,33,20 +chrX 4187980 . T . . END=4188080 GT:DP:GQ:MIN_DP:PL 0/0:45:69:45:0,69,1215 +chrX 4188081 . A C, 190.64 . AS_QUALapprox=|198|0;AS_VarDP=26|10|0;BaseQRankSum=-2.679;DP=37;MQRankSum=0.000;QUALapprox=198;RAW_GT_COUNT=0,1,0;RAW_MQandDP=133200,37;ReadPosRankSum=1.242;VarDP=36 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,10,0:36:99:0|1:4188081_A_C:198,0,921,276,950,1226:4188081:4,22,9,1 +chrX 4188082 . C . . END=4188085 GT:DP:GQ:MIN_DP:PL 0/0:33:66:33:0,66,990 +chrX 4188086 . A C, 194.64 . AS_QUALapprox=|202|0;AS_VarDP=25|10|0;BaseQRankSum=-1.458;DP=36;MQRankSum=0.000;QUALapprox=202;RAW_GT_COUNT=0,1,0;RAW_MQandDP=129600,36;ReadPosRankSum=0.260;VarDP=35 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,10,0:35:99:0|1:4188081_A_C:202,0,865,276,894,1171:4188081:4,21,9,1 +chrX 4188087 . C . . END=4188089 GT:DP:GQ:MIN_DP:PL 0/0:49:66:49:0,66,1293 +chrX 4188090 . A . . END=4188090 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,862 +chrX 4188091 . T . . END=4188192 GT:DP:GQ:MIN_DP:PL 0/0:52:35:48:0,35,996 +chrX 4188193 . A . . END=4188193 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1375 +chrX 4188194 . C . . END=4188194 GT:DP:GQ:MIN_DP:PL 0/0:51:87:51:0,87,1305 +chrX 4188195 . C . . END=4188195 GT:DP:GQ:MIN_DP:PL 0/0:57:0:57:0,0,1316 +chrX 4188196 . T . . END=4188196 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,105,1575 +chrX 4188197 . C CTTT, 1343.03 . AS_QUALapprox=|1357|0;AS_VarDP=0|42|0;DP=55;QUALapprox=1357;RAW_GT_COUNT=0,0,1;RAW_MQandDP=192000,55;VarDP=42 GT:AD:DP:GQ:PL:SB 1/1:0,42,0:42:99:1357,124,0,1357,124,1357:0,0,21,21 +chrX 4188198 . T . . END=4188219 GT:DP:GQ:MIN_DP:PL 0/0:51:63:51:0,63,945 +chrX 4188220 . G . . END=4188220 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,636 +chrX 4188221 . C . . END=4188265 GT:DP:GQ:MIN_DP:PL 0/0:35:75:35:0,75,839 +chrX 4188266 . ACTCATTGAACATGCACGTG A, 1606.03 . AS_QUALapprox=|1620|0;AS_VarDP=0|36|0;DP=37;QUALapprox=1620;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133200,37;VarDP=36 GT:AD:DP:GQ:PL:SB 1/1:0,36,0:36:99:1620,109,0,1620,109,1620:0,0,9,27 +chrX 4188286 . C . . END=4188286 GT:DP:GQ:MIN_DP:PL 0/0:37:7:37:0,7,1068 +chrX 4188287 . T . . END=4188811 GT:DP:GQ:MIN_DP:PL 0/0:42:66:42:0,66,1048 +chrX 4188812 . G A, 1582.06 . AS_QUALapprox=|1596|0;AS_VarDP=0|50|0;DP=53;QUALapprox=1596;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1596,150,0,1596,150,1596:0,0,29,21 +chrX 4188813 . T . . END=4188868 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,119,1489 +chrX 4188869 . G A, 1544.06 . AS_QUALapprox=|1558|0;AS_VarDP=0|49|0;DP=50;QUALapprox=1558;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1558,147,0,1558,147,1558:0,0,26,23 +chrX 4188870 . C . . END=4189449 GT:DP:GQ:MIN_DP:PL 0/0:55:90:55:0,90,1345 +chrX 4189450 . T C, 705.64 . AS_QUALapprox=|713|0;AS_VarDP=28|27|0;BaseQRankSum=-0.059;DP=55;MQRankSum=0.000;QUALapprox=713;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=1.373;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:28,27,0:55:99:713,0,747,797,828,1625:13,15,11,16 +chrX 4189451 . C . . END=4191196 GT:DP:GQ:MIN_DP:PL 0/0:51:68:51:0,68,1155 +chrX 4191197 . T C, 1846.06 . AS_QUALapprox=|1860|0;AS_VarDP=0|59|0;DP=61;QUALapprox=1860;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1860,176,0,1860,176,1860:0,0,32,27 +chrX 4191198 . G . . END=4191805 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,117,1643 +chrX 4191806 . G A, 2373.06 . AS_QUALapprox=|2387|0;AS_VarDP=0|56|0;DP=57;QUALapprox=2387;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,56,0:56:99:0|1:4191806_G_A:2387,169,0,2387,169,2387:4191806:0,0,23,33 +chrX 4191807 . C . . END=4191820 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 4191821 . A . . END=4191826 GT:DP:GQ:MIN_DP:PL 0/0:53:0:53:0,0,0 +chrX 4191827 . T C, 2299.06 . AS_QUALapprox=|2313|0;AS_VarDP=0|54|0;DP=54;QUALapprox=2313;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,54,0:54:99:0|1:4191806_G_A:2313,162,0,2313,162,2313:4191806:0,0,19,35 +chrX 4191828 . A . . END=4191980 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,109,1508 +chrX 4191981 . C T, 1732.06 . AS_QUALapprox=|1746|0;AS_VarDP=0|52|0;DP=54;QUALapprox=1746;RAW_GT_COUNT=0,0,1;RAW_MQandDP=193300,54;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1746,156,0,1746,156,1746:0,0,27,25 +chrX 4191982 . A . . END=4192145 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,115,1528 +chrX 4192146 . T A, 1521.06 . AS_QUALapprox=|1535|0;AS_VarDP=1|49|0;BaseQRankSum=2.183;DP=53;MQRankSum=0.000;QUALapprox=1535;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;ReadPosRankSum=0.589;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:1,49,0:50:99:1535,139,0,1537,146,1544:0,1,22,27 +chrX 4192147 . C . . END=4192265 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,110,1677 +chrX 4192266 . C T, 1742.06 . AS_QUALapprox=|1756|0;AS_VarDP=0|55|0;DP=61;QUALapprox=1756;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1756,165,0,1756,165,1756:0,0,29,26 +chrX 4192267 . A . . END=4192629 GT:DP:GQ:MIN_DP:PL 0/0:56:96:56:0,96,1365 +chrX 4192630 . G A, 2010.06 . AS_QUALapprox=|2024|0;AS_VarDP=0|64|0;DP=65;QUALapprox=2024;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=64 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:2024,191,0,2024,191,2024:0,0,28,36 +chrX 4192631 . C . . END=4193075 GT:DP:GQ:MIN_DP:PL 0/0:49:88:49:0,88,1137 +chrX 4193076 . T C, 1647.06 . AS_QUALapprox=|1661|0;AS_VarDP=0|51|0;DP=52;QUALapprox=1661;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1661,153,0,1661,153,1661:0,0,29,22 +chrX 4193077 . A . . END=4193442 GT:DP:GQ:MIN_DP:PL 0/0:53:95:53:0,95,1573 +chrX 4193443 . C T, 1856.06 . AS_QUALapprox=|1870|0;AS_VarDP=0|56|0;DP=59;QUALapprox=1870;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1870,168,0,1870,168,1870:0,0,30,26 +chrX 4193444 . C . . END=4193691 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 4193692 . G GGAT, 2550.03 . AS_QUALapprox=|2564|0;AS_VarDP=0|57|0;DP=65;QUALapprox=2564;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:2564,171,0,2565,172,2565:0,0,27,30 +chrX 4193693 . G . . END=4194181 GT:DP:GQ:MIN_DP:PL 0/0:49:83:49:0,83,1298 +chrX 4194182 . A G, 1547.06 . AS_QUALapprox=|1561|0;AS_VarDP=0|52|0;DP=57;QUALapprox=1561;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1561,154,0,1561,154,1561:0,0,34,18 +chrX 4194183 . A . . END=4194285 GT:DP:GQ:MIN_DP:PL 0/0:55:25:54:0,25,1390 +chrX 4194286 . A ATT, 1491.03 . AS_QUALapprox=|1505|0;AS_VarDP=0|46|0;DP=56;QUALapprox=1505;RAW_GT_COUNT=0,0,1;RAW_MQandDP=199600,56;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1505,138,0,1506,138,1506:0,0,26,20 +chrX 4194287 . T . . END=4194299 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,114,1710 +chrX 4194300 . C . . END=4194302 GT:DP:GQ:MIN_DP:PL 0/0:53:0:53:0,0,1136 +chrX 4194303 . T . . END=4194428 GT:DP:GQ:MIN_DP:PL 0/0:52:88:52:0,88,1393 +chrX 4194429 . C T, 1470.06 . AS_QUALapprox=|1484|0;AS_VarDP=0|45|0;DP=51;QUALapprox=1484;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=45 GT:AD:DP:GQ:PL:SB 1/1:0,45,0:45:99:1484,134,0,1484,134,1484:0,0,24,21 +chrX 4194430 . A . . END=4194771 GT:DP:GQ:MIN_DP:PL 0/0:52:89:52:0,89,1410 +chrX 4194772 . C T, 1897.06 . AS_QUALapprox=|1911|0;AS_VarDP=0|59|0;DP=59;QUALapprox=1911;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1911,177,0,1911,177,1911:0,0,28,31 +chrX 4194773 . A . . END=4196553 GT:DP:GQ:MIN_DP:PL 0/0:51:30:51:0,30,1107 +chrX 4196554 . C A, 1676.06 . AS_QUALapprox=|1690|0;AS_VarDP=0|51|0;DP=52;QUALapprox=1690;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1690,153,0,1690,153,1690:0,0,27,24 +chrX 4196555 . A . . END=4196849 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,107,1619 +chrX 4196850 . T A, 2097.06 . AS_QUALapprox=|2111|0;AS_VarDP=0|63|0;DP=64;QUALapprox=2111;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=63 GT:AD:DP:GQ:PL:SB 1/1:0,63,0:63:99:2111,189,0,2111,189,2111:0,0,30,33 +chrX 4196851 . A . . END=4197092 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,117,1558 +chrX 4197093 . A G, 1534.06 . AS_QUALapprox=|1548|0;AS_VarDP=0|47|0;DP=48;QUALapprox=1548;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1548,141,0,1548,141,1548:0,0,17,30 +chrX 4197094 . T . . END=4197355 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,113,1519 +chrX 4197356 . G C, 1644.06 . AS_QUALapprox=|1658|0;AS_VarDP=0|50|0;DP=51;QUALapprox=1658;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1658,150,0,1658,150,1658:0,0,29,21 +chrX 4197357 . A . . END=4197410 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 4197411 . C A, 1639.06 . AS_QUALapprox=|1653|0;AS_VarDP=0|50|0;DP=50;QUALapprox=1653;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1653,150,0,1653,150,1653:0,0,28,22 +chrX 4197412 . A . . END=4197466 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,107,1534 +chrX 4197467 . C A, 1466.06 . AS_QUALapprox=|1480|0;AS_VarDP=0|44|0;DP=49;QUALapprox=1480;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=44 GT:AD:DP:GQ:PL:SB 1/1:0,44,0:44:99:1480,132,0,1480,132,1480:0,0,21,23 +chrX 4197468 . C . . END=4198420 GT:DP:GQ:MIN_DP:PL 0/0:53:85:53:0,85,1175 +chrX 4198421 . C G, 2504.06 . AS_QUALapprox=|2518|0;AS_VarDP=0|56|0;DP=56;QUALapprox=2518;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,56,0:56:99:0|1:4198421_C_G:2518,169,0,2518,169,2518:4198421:0,0,36,20 +chrX 4198422 . T . . END=4198422 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 4198423 . G C, 2504.06 . AS_QUALapprox=|2518|0;AS_VarDP=0|56|0;DP=57;QUALapprox=2518;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,56,0:56:99:0|1:4198421_C_G:2518,169,0,2518,169,2518:4198421:0,0,36,20 +chrX 4198424 . T . . END=4198434 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 4198435 . C T, 1881.06 . AS_QUALapprox=|1895|0;AS_VarDP=0|56|0;DP=56;QUALapprox=1895;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1895,168,0,1895,168,1895:0,0,36,20 +chrX 4198436 . T . . END=4198989 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,109,1424 +chrX 4198990 . T C, 1717.06 . AS_QUALapprox=|1731|0;AS_VarDP=0|54|0;DP=58;QUALapprox=1731;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:1731,162,0,1731,162,1731:0,0,27,27 +chrX 4198991 . A . . END=4199253 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 4199254 . G C, 2432.06 . AS_QUALapprox=|2446|0;AS_VarDP=0|56|0;DP=56;QUALapprox=2446;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,56,0:56:99:0|1:4199254_G_C:2446,169,0,2446,169,2446:4199254:0,0,23,33 +chrX 4199255 . T . . END=4199260 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 4199261 . G C, 2417.06 . AS_QUALapprox=|2431|0;AS_VarDP=0|55|0;DP=55;QUALapprox=2431;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,55,0:55:99:0|1:4199254_G_C:2431,166,0,2431,166,2431:4199254:0,0,22,33 +chrX 4199262 . T . . END=4199369 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,109,1441 +chrX 4199370 . T A, 1546.06 . AS_QUALapprox=|1560|0;AS_VarDP=0|47|0;DP=49;QUALapprox=1560;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1560,141,0,1560,141,1560:0,0,22,25 +chrX 4199371 . G . . END=4199405 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,112,1331 +chrX 4199406 . C G, 1370.06 . AS_QUALapprox=|1384|0;AS_VarDP=0|44|0;DP=46;QUALapprox=1384;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;VarDP=44 GT:AD:DP:GQ:PL:SB 1/1:0,44,0:44:99:1384,131,0,1384,131,1384:0,0,19,25 +chrX 4199407 . C . . END=4199449 GT:DP:GQ:MIN_DP:PL 0/0:42:90:42:0,90,1232 +chrX 4199450 . G C, 1315.06 . AS_QUALapprox=|1329|0;AS_VarDP=0|39|0;DP=41;QUALapprox=1329;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147600,41;VarDP=39 GT:AD:DP:GQ:PL:SB 1/1:0,39,0:39:99:1329,117,0,1329,117,1329:0,0,14,25 +chrX 4199451 . G . . END=4199682 GT:DP:GQ:MIN_DP:PL 0/0:41:63:39:0,63,1222 +chrX 4199683 . G A, 1520.06 . AS_QUALapprox=|1534|0;AS_VarDP=0|47|0;DP=50;QUALapprox=1534;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1534,141,0,1534,141,1534:0,0,27,20 +chrX 4199684 . A . . END=4200636 GT:DP:GQ:MIN_DP:PL 0/0:55:85:55:0,85,1300 +chrX 4200637 . G T, 1907.06 . AS_QUALapprox=|1921|0;AS_VarDP=1|59|0;BaseQRankSum=-0.343;DP=62;MQRankSum=0.000;QUALapprox=1921;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;ReadPosRankSum=-0.896;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:1,59,0:60:99:1921,145,0,1924,177,1956:1,0,28,31 +chrX 4200638 . A . . END=4200820 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 4200821 . T G, 1951.06 . AS_QUALapprox=|1965|0;AS_VarDP=1|61|0;BaseQRankSum=2.324;DP=64;MQRankSum=0.000;QUALapprox=1965;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;ReadPosRankSum=-1.453;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:1,61,0:62:99:1965,175,0,1968,182,1975:1,0,28,33 +chrX 4200822 . A . . END=4201284 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,107,1682 +chrX 4201285 . TA T, 1815.03 . AS_QUALapprox=|1829|0;AS_VarDP=0|49|0;DP=51;QUALapprox=1829;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1829,147,0,1829,147,1829:0,0,28,21 +chrX 4201287 . A . . END=4201600 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,105,1594 +chrX 4201601 . A G, 1782.06 . AS_QUALapprox=|1796|0;AS_VarDP=0|55|0;DP=59;QUALapprox=1796;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1796,165,0,1796,165,1796:0,0,27,28 +chrX 4201602 . T . . END=4201799 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,112,1593 +chrX 4201800 . A G, 1883.06 . AS_QUALapprox=|1897|0;AS_VarDP=0|56|0;DP=57;QUALapprox=1897;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1897,168,0,1897,168,1897:0,0,31,25 +chrX 4201801 . T . . END=4201818 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 4201819 . C T, 1781.06 . AS_QUALapprox=|1795|0;AS_VarDP=0|56|0;DP=59;QUALapprox=1795;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1795,167,0,1795,167,1795:0,0,30,26 +chrX 4201820 . T . . END=4202647 GT:DP:GQ:MIN_DP:PL 0/0:56:89:56:0,89,1171 +chrX 4202648 . G T, 1658.06 . AS_QUALapprox=|1672|0;AS_VarDP=0|52|0;DP=57;QUALapprox=1672;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1672,156,0,1672,156,1672:0,0,30,22 +chrX 4202649 . T . . END=4203145 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,104,1427 +chrX 4203146 . T C, 1727.06 . AS_QUALapprox=|1741|0;AS_VarDP=1|54|0;BaseQRankSum=-0.424;DP=58;MQRankSum=0.000;QUALapprox=1741;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;ReadPosRankSum=0.977;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:1,54,0:55:99:1741,131,0,1744,162,1775:0,1,29,25 +chrX 4203147 . A . . END=4203216 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 4203217 . G T, 599.64 . AS_QUALapprox=|607|0;AS_VarDP=33|25|0;BaseQRankSum=-1.228;DP=61;MQRankSum=0.000;QUALapprox=607;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-0.872;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:33,25,0:58:99:607,0,921,706,995,1702:15,18,11,14 +chrX 4203218 . T . . END=4203267 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 4203268 . A G, 1737.06 . AS_QUALapprox=|1751|0;AS_VarDP=0|53|0;DP=53;QUALapprox=1751;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1751,159,0,1751,159,1751:0,0,21,32 +chrX 4203269 . G . . END=4203573 GT:DP:GQ:MIN_DP:PL 0/0:52:97:52:0,97,1291 +chrX 4203574 . T C, 2139.06 . AS_QUALapprox=|2153|0;AS_VarDP=0|49|0;DP=51;QUALapprox=2153;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,49,0:49:99:0|1:4203574_T_C:2153,147,0,2153,147,2153:4203574:0,0,28,21 +chrX 4203575 . C . . END=4203583 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 4203584 . T G, 2199.06 . AS_QUALapprox=|2213|0;AS_VarDP=0|51|0;DP=53;QUALapprox=2213;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=51 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,51,0:51:99:0|1:4203574_T_C:2213,153,0,2213,153,2213:4203574:0,0,31,20 +chrX 4203585 . T . . END=4204670 GT:DP:GQ:MIN_DP:PL 0/0:61:82:61:0,82,1499 +chrX 4204671 . GA G, 1608.03 . AS_QUALapprox=|1622|0;AS_VarDP=1|47|0;BaseQRankSum=-0.315;DP=51;MQRankSum=0.000;QUALapprox=1622;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;ReadPosRankSum=0.072;VarDP=48 GT:AD:DP:GQ:PL:SB 1/1:1,47,0:48:99:1622,109,0,1625,141,1657:1,0,25,22 +chrX 4204673 . A . . END=4205315 GT:DP:GQ:MIN_DP:PL 0/0:52:88:52:0,88,1181 +chrX 4205316 . A G, 1378.06 . AS_QUALapprox=|1392|0;AS_VarDP=0|43|0;DP=46;QUALapprox=1392;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;VarDP=43 GT:AD:DP:GQ:PL:SB 1/1:0,43,0:43:99:1392,129,0,1392,129,1392:0,0,26,17 +chrX 4205317 . G . . END=4205714 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,106,1226 +chrX 4205715 . A ACTCT, 1864.03 . AS_QUALapprox=|1878|0;AS_VarDP=0|42|0;DP=48;QUALapprox=1878;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172564,48;VarDP=42 GT:AD:DP:GQ:PL:SB 1/1:0,42,0:42:99:1878,126,0,1878,126,1878:0,0,23,19 +chrX 4205716 . C . . END=4205947 GT:DP:GQ:MIN_DP:PL 0/0:55:47:55:0,47,1335 +chrX 4205948 . A G, 1694.06 . AS_QUALapprox=|1708|0;AS_VarDP=0|52|0;DP=52;QUALapprox=1708;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1708,156,0,1708,156,1708:0,0,23,29 +chrX 4205949 . G . . END=4206500 GT:DP:GQ:MIN_DP:PL 0/0:51:67:51:0,67,1261 +chrX 4206501 . G GT, 493.60 . AS_QUALapprox=|501|0;AS_VarDP=23|25|0;BaseQRankSum=1.041;DP=52;MQRankSum=0.000;QUALapprox=501;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=-1.156;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:23,25,0:48:99:501,0,458,570,533,1103:12,11,16,9 +chrX 4206502 . T . . END=4207191 GT:DP:GQ:MIN_DP:PL 0/0:62:71:62:0,71,1468 +chrX 4207192 . A T, 1480.06 . AS_QUALapprox=|1494|0;AS_VarDP=0|45|0;DP=47;QUALapprox=1494;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;VarDP=45 GT:AD:DP:GQ:PL:SB 1/1:0,45,0:45:99:1494,135,0,1494,135,1494:0,0,23,22 +chrX 4207193 . T . . END=4207315 GT:DP:GQ:MIN_DP:PL 0/0:42:62:42:0,62,1105 +chrX 4207316 . T TA, 1012.03 . AS_QUALapprox=|1026|0;AS_VarDP=2|43|0;BaseQRankSum=-0.674;DP=54;MQRankSum=-0.231;QUALapprox=1026;RAW_GT_COUNT=0,0,1;RAW_MQandDP=191009,54;ReadPosRankSum=-0.306;VarDP=45 GT:AD:DP:GQ:PL:SB 1/1:2,43,0:45:82:1026,82,0,1032,128,1078:2,0,19,24 +chrX 4207317 . A . . END=4207475 GT:DP:GQ:MIN_DP:PL 0/0:54:25:51:0,25,1255 +chrX 4207476 . G A, 1684.06 . AS_QUALapprox=|1698|0;AS_VarDP=0|53|0;DP=53;QUALapprox=1698;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1698,159,0,1698,159,1698:0,0,30,23 +chrX 4207477 . G . . END=4208041 GT:DP:GQ:MIN_DP:PL 0/0:58:87:58:0,87,1290 +chrX 4208042 . T C, 1287.06 . AS_QUALapprox=|1301|0;AS_VarDP=0|41|0;DP=43;QUALapprox=1301;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154800,43;VarDP=41 GT:AD:DP:GQ:PL:SB 1/1:0,41,0:41:99:1301,122,0,1301,122,1301:0,0,12,29 +chrX 4208043 . T . . END=4209526 GT:DP:GQ:MIN_DP:PL 0/0:53:80:53:0,80,1018 +chrX 4209527 . C A, 1257.06 . AS_QUALapprox=|1271|0;AS_VarDP=0|38|0;DP=39;QUALapprox=1271;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140400,39;VarDP=38 GT:AD:DP:GQ:PL:SB 1/1:0,38,0:38:99:1271,114,0,1271,114,1271:0,0,21,17 +chrX 4209528 . A . . END=4212255 GT:DP:GQ:MIN_DP:PL 0/0:57:73:57:0,73,1067 +chrX 4212256 . G A, 1438.06 . AS_QUALapprox=|1452|0;AS_VarDP=0|45|0;DP=49;QUALapprox=1452;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=45 GT:AD:DP:GQ:PL:SB 1/1:0,45,0:45:99:1452,134,0,1452,134,1452:0,0,23,22 +chrX 4212257 . C . . END=4213487 GT:DP:GQ:MIN_DP:PL 0/0:52:66:52:0,66,1092 +chrX 4213488 . G A, 1818.06 . AS_QUALapprox=|1832|0;AS_VarDP=1|55|0;BaseQRankSum=2.854;DP=58;MQRankSum=0.000;QUALapprox=1832;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;ReadPosRankSum=0.340;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:1,55,0:56:99:1832,158,0,1835,165,1842:1,0,28,27 +chrX 4213489 . G . . END=4214879 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,102,1320 +chrX 4214880 . A AT, 1092.03 . AS_QUALapprox=|1106|0;AS_VarDP=0|43|0;DP=48;QUALapprox=1106;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172225,48;VarDP=43 GT:AD:DP:GQ:PL:SB 1/1:0,43,0:43:99:1106,127,0,1106,127,1106:0,0,27,16 +chrX 4214881 . T . . END=4214891 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 4214892 . C . . END=4214892 GT:DP:GQ:MIN_DP:PL 0/0:58:0:58:0,0,1279 +chrX 4214893 . C . . END=4214895 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,103,1462 +chrX 4214896 . G . . END=4214896 GT:DP:GQ:MIN_DP:PL 0/0:45:8:45:0,8,1138 +chrX 4214897 . A . . END=4215201 GT:DP:GQ:MIN_DP:PL 0/0:53:22:47:0,22,1175 +chrX 4215202 . A G, 2191.06 . AS_QUALapprox=|2205|0;AS_VarDP=0|52|0;DP=56;QUALapprox=2205;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,52,0:52:99:0|1:4215202_A_G:2205,156,0,2205,156,2205:4215202:0,0,28,24 +chrX 4215203 . G . . END=4215218 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 4215219 . C A, 2240.06 . AS_QUALapprox=|2254|0;AS_VarDP=0|54|0;DP=57;QUALapprox=2254;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,54,0:54:99:0|1:4215202_A_G:2254,162,0,2254,162,2254:4215202:0,0,29,25 +chrX 4215220 . T . . END=4215433 GT:DP:GQ:MIN_DP:PL 0/0:58:95:58:0,95,1365 +chrX 4215434 . C T, 808.64 . AS_QUALapprox=|816|0;AS_VarDP=40|32|0;BaseQRankSum=-2.757;DP=75;MQRankSum=0.000;QUALapprox=816;RAW_GT_COUNT=0,1,0;RAW_MQandDP=270000,75;ReadPosRankSum=1.792;VarDP=72 GT:AD:DP:GQ:PL:SB 0/1:40,32,0:72:99:816,0,1149,936,1245,2181:21,19,18,14 +chrX 4215435 . G . . END=4215500 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 4215501 . A G, 2224.06 . AS_QUALapprox=|2238|0;AS_VarDP=0|69|0;DP=72;QUALapprox=2238;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;VarDP=69 GT:AD:DP:GQ:PL:SB 1/1:0,69,0:69:99:2238,207,0,2238,207,2238:0,0,34,35 +chrX 4215502 . C . . END=4215798 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 4215799 . C T, 1871.06 . AS_QUALapprox=|1885|0;AS_VarDP=1|58|0;BaseQRankSum=2.407;DP=62;MQRankSum=0.000;QUALapprox=1885;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;ReadPosRankSum=-1.204;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:1,58,0:59:99:1885,167,0,1887,174,1894:1,0,26,32 +chrX 4215800 . C . . END=4215920 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 4215921 . G T, 1959.06 . AS_QUALapprox=|1973|0;AS_VarDP=0|61|0;DP=62;QUALapprox=1973;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=61 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:1973,183,0,1973,183,1973:0,0,37,24 +chrX 4215922 . T . . END=4216647 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1623 +chrX 4216648 . C G, 1616.06 . AS_QUALapprox=|1630|0;AS_VarDP=0|56|0;DP=57;QUALapprox=1630;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1630,167,0,1630,167,1630:0,0,26,30 +chrX 4216649 . A . . END=4216808 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,116,1800 +chrX 4216809 . C A, 661.64 . AS_QUALapprox=|669|0;AS_VarDP=32|26|0;BaseQRankSum=0.242;DP=58;MQRankSum=0.000;QUALapprox=669;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=1.682;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:32,26,0:58:99:669,0,843,764,921,1686:17,15,15,11 +chrX 4216810 . T . . END=4216978 GT:DP:GQ:MIN_DP:PL 0/0:51:89:51:0,89,1390 +chrX 4216979 . G A, 1572.06 . AS_QUALapprox=|1586|0;AS_VarDP=0|48|0;DP=51;QUALapprox=1586;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=48 GT:AD:DP:GQ:PL:SB 1/1:0,48,0:48:99:1586,144,0,1586,144,1586:0,0,15,33 +chrX 4216980 . G . . END=4217255 GT:DP:GQ:MIN_DP:PL 0/0:30:26:30:0,26,744 +chrX 4217256 . G . . END=4217256 GT:DP:GQ:MIN_DP:PL 0/0:30:16:30:0,16,784 +chrX 4217257 . T . . END=4217277 GT:DP:GQ:MIN_DP:PL 0/0:30:48:29:0,48,720 +chrX 4217278 . AAAAAATATATAT A,AAT, 43.60 . AS_QUALapprox=|0|51|0;AS_VarDP=7|0|5|0;BaseQRankSum=0.000;DP=34;MQRankSum=0.124;QUALapprox=51;RAW_GT_COUNT=0,1,0;RAW_MQandDP=111701,34;ReadPosRankSum=-0.003;VarDP=12 GT:AD:DP:GQ:PL:SB 0/2:7,0,5,0:12:51:51,113,608,0,166,300,124,468,266,505:3,4,3,2 +chrX 4217291 . A . . END=4217430 GT:DP:GQ:MIN_DP:PL 0/0:33:21:30:0,21,844 +chrX 4217431 . C . . END=4217431 GT:DP:GQ:MIN_DP:PL 0/0:29:18:29:0,18,819 +chrX 4217432 . C . . END=4217441 GT:DP:GQ:MIN_DP:PL 0/0:30:20:26:0,20,725 +chrX 4217442 . G . . END=4217444 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,651 +chrX 4217445 . C . . END=4217445 GT:DP:GQ:MIN_DP:PL 0/0:26:49:26:0,49,755 +chrX 4217446 . A . . END=4217446 GT:DP:GQ:MIN_DP:PL 0/0:25:6:25:0,6,710 +chrX 4217447 . A . . END=4217447 GT:DP:GQ:MIN_DP:PL 0/0:26:43:26:0,43,804 +chrX 4217448 . G . . END=4217457 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,0 +chrX 4217458 . C CAAAAAAAAAA,CAAAAAAAAAAAA, 861.02 . AS_QUALapprox=|804|844|0;AS_VarDP=0|2|5|0;DP=31;QUALapprox=878;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100116,31;VarDP=7 GT:AD:DP:GQ:PL:SB 1/2:0,2,5,0:7:34:878,136,74,96,0,34,564,135,95,504:0,0,3,4 +chrX 4217459 . A . . END=4217558 GT:DP:GQ:MIN_DP:PL 0/0:44:51:44:0,51,765 +chrX 4217559 . C G, 1458.06 . AS_QUALapprox=|1472|0;AS_VarDP=0|47|0;DP=49;QUALapprox=1472;RAW_GT_COUNT=0,0,1;RAW_MQandDP=173003,49;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1472,140,0,1472,140,1472:0,0,29,18 +chrX 4217560 . T . . END=4217656 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 4217657 . G A, 707.64 . AS_QUALapprox=|715|0;AS_VarDP=24|26|0;BaseQRankSum=2.761;DP=55;MQRankSum=-0.921;QUALapprox=715;RAW_GT_COUNT=0,1,0;RAW_MQandDP=197001,55;ReadPosRankSum=-0.641;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:24,26,0:50:99:715,0,504,786,583,1368:12,12,14,12 +chrX 4217658 . G . . END=4217932 GT:DP:GQ:MIN_DP:PL 0/0:68:93:68:0,93,1472 +chrX 4217933 . A C, 1871.06 . AS_QUALapprox=|1885|0;AS_VarDP=0|60|0;DP=61;QUALapprox=1885;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:1885,179,0,1885,179,1885:0,0,28,32 +chrX 4217934 . T . . END=4218251 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 4218252 . C T, 1752.06 . AS_QUALapprox=|1766|0;AS_VarDP=0|55|0;DP=60;QUALapprox=1766;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1766,165,0,1766,165,1766:0,0,30,25 +chrX 4218253 . C . . END=4218341 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,109,1602 +chrX 4218342 . A G, 2323.06 . AS_QUALapprox=|2337|0;AS_VarDP=0|54|0;DP=55;QUALapprox=2337;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,54,0:54:99:0|1:4218342_A_G:2337,163,0,2337,163,2337:4218342:0,0,27,27 +chrX 4218343 . C . . END=4218350 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 4218351 . C T, 2299.06 . AS_QUALapprox=|2313|0;AS_VarDP=0|53|0;DP=55;QUALapprox=2313;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,53,0:53:99:0|1:4218342_A_G:2313,160,0,2313,160,2313:4218342:0,0,25,28 +chrX 4218352 . G . . END=4218761 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,114,1578 +chrX 4218762 . TAAAA T, 2431.03 . AS_QUALapprox=|2445|0;AS_VarDP=0|56|0;DP=60;QUALapprox=2445;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,56,0:56:99:0|1:4218762_TAAAA_T:2445,169,0,2445,169,2445:4218762:0,0,28,28 +chrX 4218767 . A . . END=4218774 GT:DP:GQ:MIN_DP:PL 0/0:57:77:57:0,77,1682 +chrX 4218775 . A C, 2499.06 . AS_QUALapprox=|2513|0;AS_VarDP=0|58|0;DP=60;QUALapprox=2513;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=58 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,58,0:58:99:0|1:4218762_TAAAA_T:2513,175,0,2513,175,2513:4218762:0,0,30,28 +chrX 4218776 . A . . END=4218921 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 4218922 . T C, 1663.06 . AS_QUALapprox=|1677|0;AS_VarDP=0|52|0;DP=53;QUALapprox=1677;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1677,156,0,1677,156,1677:0,0,30,22 +chrX 4218923 . G . . END=4219072 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,104,1374 +chrX 4219073 . G A, 1581.06 . AS_QUALapprox=|1595|0;AS_VarDP=0|46|0;DP=46;QUALapprox=1595;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1595,138,0,1595,138,1595:0,0,19,27 +chrX 4219074 . A . . END=4219747 GT:DP:GQ:MIN_DP:PL 0/0:58:94:58:0,94,1194 +chrX 4219748 . A G, 1684.06 . AS_QUALapprox=|1698|0;AS_VarDP=0|50|0;DP=54;QUALapprox=1698;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1698,150,0,1698,150,1698:0,0,19,31 +chrX 4219749 . T . . END=4219831 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 4219832 . C A, 1664.06 . AS_QUALapprox=|1678|0;AS_VarDP=0|50|0;DP=53;QUALapprox=1678;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1678,150,0,1678,150,1678:0,0,24,26 +chrX 4219833 . T . . END=4219921 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 4219922 . G A, 1807.06 . AS_QUALapprox=|1821|0;AS_VarDP=0|55|0;DP=59;QUALapprox=1821;RAW_GT_COUNT=0,0,1;RAW_MQandDP=210825,59;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1821,165,0,1821,165,1821:0,0,25,30 +chrX 4219923 . G . . END=4220087 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,110,1643 +chrX 4220088 . G A, 1544.06 . AS_QUALapprox=|1558|0;AS_VarDP=0|47|0;DP=48;QUALapprox=1558;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1558,141,0,1558,141,1558:0,0,29,18 +chrX 4220089 . T . . END=4220159 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,119,1448 +chrX 4220160 . CATT C, 2460.03 . AS_QUALapprox=|2474|0;AS_VarDP=0|55|0;DP=60;QUALapprox=2474;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:2474,166,0,2474,166,2474:0,0,28,27 +chrX 4220164 . A . . END=4220434 GT:DP:GQ:MIN_DP:PL 0/0:61:51:61:0,51,765 +chrX 4220435 . A ATTCTT, 53.60 . AS_QUALapprox=|61|0;AS_VarDP=9|6|0;BaseQRankSum=-0.040;DP=42;MQRankSum=0.000;QUALapprox=61;RAW_GT_COUNT=0,1,0;RAW_MQandDP=150201,42;ReadPosRankSum=1.459;VarDP=15 GT:AD:DP:GQ:PL:SB 0/1:9,6,0:15:61:61,0,351,90,369,458:1,8,6,0 +chrX 4220436 . T . . END=4220452 GT:DP:GQ:MIN_DP:PL 0/0:42:36:41:0,36,540 +chrX 4220453 . T C, 348.64 . AS_QUALapprox=|356|0;AS_VarDP=6|12|0;BaseQRankSum=0.000;DP=45;MQRankSum=-0.943;QUALapprox=356;RAW_GT_COUNT=0,1,0;RAW_MQandDP=156651,45;ReadPosRankSum=-2.483;VarDP=18 GT:AD:DP:GQ:PL:SB 0/1:6,12,0:18:52:356,0,52,373,90,463:6,0,5,7 +chrX 4220454 . T . . END=4220669 GT:DP:GQ:MIN_DP:PL 0/0:34:42:31:0,42,630 +chrX 4220670 . G A, 1207.06 . AS_QUALapprox=|1221|0;AS_VarDP=2|38|0;BaseQRankSum=3.158;DP=41;MQRankSum=0.000;QUALapprox=1221;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147600,41;ReadPosRankSum=-1.335;VarDP=40 GT:AD:DP:GQ:PL:SB 1/1:2,38,0:40:71:1221,71,0,1227,114,1271:1,1,19,19 +chrX 4220671 . A . . END=4221547 GT:DP:GQ:MIN_DP:PL 0/0:54:64:54:0,64,1027 +chrX 4221548 . T C, 1128.06 . AS_QUALapprox=|1142|0;AS_VarDP=0|34|0;DP=37;QUALapprox=1142;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133200,37;VarDP=34 GT:AD:DP:GQ:PL:SB 1/1:0,34,0:34:99:1142,102,0,1142,102,1142:0,0,15,19 +chrX 4221549 . G . . END=4221846 GT:DP:GQ:MIN_DP:PL 0/0:51:91:51:0,91,1126 +chrX 4221847 . G A, 1866.06 . AS_QUALapprox=|1880|0;AS_VarDP=0|59|0;DP=60;QUALapprox=1880;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1880,176,0,1880,176,1880:0,0,32,27 +chrX 4221848 . C . . END=4222173 GT:DP:GQ:MIN_DP:PL 0/0:48:75:48:0,75,1192 +chrX 4222174 . C T, 2072.06 . AS_QUALapprox=|2086|0;AS_VarDP=0|50|0;DP=50;QUALapprox=2086;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,50,0:50:99:0|1:4222174_C_T:2086,150,0,2086,150,2086:4222174:0,0,29,21 +chrX 4222175 . A . . END=4222198 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,120,1800 +chrX 4222199 . A C, 1993.06 . AS_QUALapprox=|2007|0;AS_VarDP=0|47|0;DP=49;QUALapprox=2007;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,47,0:47:99:0|1:4222174_C_T:2007,141,0,2007,141,2007:4222174:0,0,28,19 +chrX 4222200 . C . . END=4222245 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 4222246 . CTTTA C, 2236.03 . AS_QUALapprox=|2250|0;AS_VarDP=0|50|0;DP=54;QUALapprox=2250;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:2250,151,0,2250,151,2250:0,0,26,24 +chrX 4222251 . T . . END=4222442 GT:DP:GQ:MIN_DP:PL 0/0:51:90:51:0,90,1305 +chrX 4222443 . G A, 1342.06 . AS_QUALapprox=|1356|0;AS_VarDP=0|39|0;DP=40;QUALapprox=1356;RAW_GT_COUNT=0,0,1;RAW_MQandDP=143316,40;VarDP=39 GT:AD:DP:GQ:PL:SB 1/1:0,39,0:39:99:1356,117,0,1356,117,1356:0,0,19,20 +chrX 4222444 . A . . END=4222908 GT:DP:GQ:MIN_DP:PL 0/0:60:98:60:0,98,1400 +chrX 4222909 . T C, 1763.06 . AS_QUALapprox=|1777|0;AS_VarDP=0|52|0;DP=52;QUALapprox=1777;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1777,156,0,1777,156,1777:0,0,17,35 +chrX 4222910 . A . . END=4222993 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,111,1508 +chrX 4222994 . A G, 1513.06 . AS_QUALapprox=|1527|0;AS_VarDP=0|50|0;DP=51;QUALapprox=1527;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1527,148,0,1527,148,1527:0,0,28,22 +chrX 4222995 . T . . END=4223418 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,109,1391 +chrX 4223419 . G T, 1837.06 . AS_QUALapprox=|1851|0;AS_VarDP=0|56|0;DP=56;QUALapprox=1851;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1851,167,0,1851,167,1851:0,0,31,25 +chrX 4223420 . A . . END=4223748 GT:DP:GQ:MIN_DP:PL 0/0:56:87:56:0,87,1335 +chrX 4223749 . T C, 1593.06 . AS_QUALapprox=|1607|0;AS_VarDP=0|51|0;DP=52;QUALapprox=1607;RAW_GT_COUNT=0,0,1;RAW_MQandDP=186849,52;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1607,153,0,1607,153,1607:0,0,22,29 +chrX 4223750 . G . . END=4224193 GT:DP:GQ:MIN_DP:PL 0/0:58:96:58:0,96,1426 +chrX 4224194 . A G, 1906.06 . AS_QUALapprox=|1920|0;AS_VarDP=0|58|0;DP=61;QUALapprox=1920;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=58 GT:AD:DP:GQ:PL:SB 1/1:0,58,0:58:99:1920,174,0,1920,174,1920:0,0,34,24 +chrX 4224195 . A . . END=4224273 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 4224274 . T C, 1945.06 . AS_QUALapprox=|1959|0;AS_VarDP=0|59|0;DP=63;QUALapprox=1959;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1959,177,0,1959,177,1959:0,0,31,28 +chrX 4224275 . T . . END=4224544 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,100,1410 +chrX 4224545 . C T, 2239.06 . AS_QUALapprox=|2253|0;AS_VarDP=1|70|0;BaseQRankSum=2.294;DP=74;MQRankSum=0.000;QUALapprox=2253;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;ReadPosRankSum=-0.073;VarDP=71 GT:AD:DP:GQ:PL:SB 1/1:1,70,0:71:99:2253,203,0,2255,210,2262:1,0,31,39 +chrX 4224546 . C . . END=4224881 GT:DP:GQ:MIN_DP:PL 0/0:69:42:69:0,42,630 +chrX 4224882 . T . . END=4224883 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,0 +chrX 4224884 . T . . END=4224899 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,99,1485 +chrX 4224900 . TG T, 1712.03 . AS_QUALapprox=|1726|0;AS_VarDP=1|41|0;BaseQRankSum=-0.501;DP=46;MQRankSum=0.000;QUALapprox=1726;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;ReadPosRankSum=-0.949;VarDP=42 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:1,41,0:42:81:0|1:4224900_TG_T:1726,81,0,1729,123,1771:4224900:0,1,14,27 +chrX 4224902 . TC T, 1712.03 . AS_QUALapprox=|1726|0;AS_VarDP=1|41|0;BaseQRankSum=-0.461;DP=44;MQRankSum=0.000;QUALapprox=1726;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158400,44;ReadPosRankSum=-0.991;VarDP=42 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:1,41,0:42:81:0|1:4224900_TG_T:1726,81,0,1729,123,1771:4224900:0,1,14,27 +chrX 4224904 . T . . END=4224910 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,102,1530 +chrX 4224911 . A G, 1575.06 . AS_QUALapprox=|1589|0;AS_VarDP=1|37|0;BaseQRankSum=-0.257;DP=40;MQRankSum=0.000;QUALapprox=1589;RAW_GT_COUNT=0,0,1;RAW_MQandDP=144000,40;ReadPosRankSum=-1.187;VarDP=38 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:1,37,0:38:69:0|1:4224900_TG_T:1589,69,0,1592,111,1634:4224900:0,1,12,25 +chrX 4224912 . T . . END=4225569 GT:DP:GQ:MIN_DP:PL 0/0:51:75:51:0,75,1166 +chrX 4225570 . C T, 1748.06 . AS_QUALapprox=|1762|0;AS_VarDP=0|54|0;DP=54;QUALapprox=1762;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:1762,162,0,1762,162,1762:0,0,30,24 +chrX 4225571 . C . . END=4226315 GT:DP:GQ:MIN_DP:PL 0/0:58:67:58:0,67,993 +chrX 4226316 . A AT, 1391.03 . AS_QUALapprox=|1405|0;AS_VarDP=1|50|0;BaseQRankSum=1.572;DP=53;MQRankSum=0.000;QUALapprox=1405;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;ReadPosRankSum=-1.631;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:1,50,0:51:99:1405,127,0,1408,150,1432:0,1,23,27 +chrX 4226317 . T . . END=4226623 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,107,1461 +chrX 4226624 . T TA,TTA, 1764.02 . AS_QUALapprox=|1210|1304|0;AS_VarDP=0|22|24|0;DP=58;QUALapprox=1781;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=46 GT:AD:DP:GQ:PL:SB 1/2:0,22,24,0:46:99:1781,683,571,621,0,477,1563,687,609,1486:0,0,28,18 +chrX 4226625 . A . . END=4226869 GT:DP:GQ:MIN_DP:PL 0/0:52:86:52:0,86,1330 +chrX 4226870 . T A, 609.64 . AS_QUALapprox=|617|0;AS_VarDP=21|23|0;BaseQRankSum=-1.075;DP=45;MQRankSum=1.092;QUALapprox=617;RAW_GT_COUNT=0,1,0;RAW_MQandDP=159241,45;ReadPosRankSum=-0.917;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:21,23,0:44:99:617,0,576,680,646,1326:12,9,11,12 +chrX 4226871 . C . . END=4226911 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,112,1341 +chrX 4226912 . C G, 1470.06 . AS_QUALapprox=|1484|0;AS_VarDP=0|46|0;DP=49;QUALapprox=1484;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1484,138,0,1484,138,1484:0,0,23,23 +chrX 4226913 . A . . END=4227107 GT:DP:GQ:MIN_DP:PL 0/0:49:56:49:0,56,798 +chrX 4227108 . GTATACATATATATA G, 333.60 . AS_QUALapprox=|341|0;AS_VarDP=15|17|0;BaseQRankSum=-0.560;DP=35;MQRankSum=-0.665;QUALapprox=341;RAW_GT_COUNT=0,1,0;RAW_MQandDP=110757,35;ReadPosRankSum=-1.115;VarDP=32 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:15,17,0:32:99:0|1:4227108_GTATACATATATATA_G:341,0,367,385,416,801:4227108:7,8,6,11 +chrX 4227123 . T . . END=4227123 GT:DP:GQ:MIN_DP:PL 0/0:32:78:32:0,78,1170 +chrX 4227124 . ATG A, 294.60 . AS_QUALapprox=|302|0;AS_VarDP=18|13|0;BaseQRankSum=1.879;DP=33;MQRankSum=0.464;QUALapprox=302;RAW_GT_COUNT=0,1,0;RAW_MQandDP=103557,33;ReadPosRankSum=1.383;VarDP=31 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:18,13,0:31:99:1|0:4227108_GTATACATATATATA_G:302,0,378,354,417,771:4227108:7,11,7,6 +chrX 4227126 . GTATA *,G, 379.01 . AS_QUALapprox=|0|952|0;AS_VarDP=0|13|18|0;DP=33;QUALapprox=1285;RAW_GT_COUNT=0,0,1;RAW_MQandDP=103557,33;VarDP=31 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|2:0,13,18,0:31:99:0|1:4227108_GTATACATATATATA_G:1285,460,376,394,0,333,1113,454,403,1066:4227108:0,0,14,17 +chrX 4227129 . TACATATATATATATATATATGTATACATATATATATATGTATAC T,*, 307.01 . AS_QUALapprox=|907|0|0;AS_VarDP=0|13|17|0;DP=32;QUALapprox=1255;RAW_GT_COUNT=0,0,1;RAW_MQandDP=96982,32;VarDP=30 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|2:0,13,17,0:30:99:1|0:4227108_GTATACATATATATA_G:1255,431,348,393,0,304,1080,423,385,1020:4227108:0,0,14,16 +chrX 4227145 . TATATGTATACATATATATATATGTATAC *,T, 280.01 . AS_QUALapprox=|0|869|0;AS_VarDP=0|13|14|0;DP=29;QUALapprox=1182;RAW_GT_COUNT=0,0,1;RAW_MQandDP=86182,29;VarDP=27 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|2:0,13,14,0:27:99:0|1:4227108_GTATACATATATATA_G:1182,359,277,393,0,313,1007,352,385,948:4227108:0,0,13,14 +chrX 4227174 . A . . END=4227254 GT:DP:GQ:MIN_DP:PL 0/0:20:25:13:0,25,432 +chrX 4227255 . C . . END=4227255 GT:DP:GQ:MIN_DP:PL 0/0:21:0:21:0,0,532 +chrX 4227256 . G . . END=4227258 GT:DP:GQ:MIN_DP:PL 0/0:24:28:21:0,28,559 +chrX 4227259 . G . . END=4227260 GT:DP:GQ:MIN_DP:PL 0/0:24:0:24:0,0,510 +chrX 4227261 . G . . END=4227263 GT:DP:GQ:MIN_DP:PL 0/0:23:31:22:0,31,573 +chrX 4227264 . C . . END=4227264 GT:DP:GQ:MIN_DP:PL 0/0:20:11:20:0,11,526 +chrX 4227265 . G . . END=4227311 GT:DP:GQ:MIN_DP:PL 0/0:25:28:21:0,28,519 +chrX 4227312 . G A, 909.06 . AS_QUALapprox=|923|0;AS_VarDP=0|28|0;DP=30;QUALapprox=923;RAW_GT_COUNT=0,0,1;RAW_MQandDP=106000,30;VarDP=28 GT:AD:DP:GQ:PL:SB 1/1:0,28,0:28:84:923,84,0,923,84,923:0,0,15,13 +chrX 4227313 . T . . END=4227650 GT:DP:GQ:MIN_DP:PL 0/0:32:22:31:0,22,820 +chrX 4227651 . A G, 1616.06 . AS_QUALapprox=|1630|0;AS_VarDP=0|52|0;DP=57;QUALapprox=1630;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1630,155,0,1630,155,1630:0,0,28,24 +chrX 4227652 . T . . END=4227762 GT:DP:GQ:MIN_DP:PL 0/0:56:85:56:0,85,1456 +chrX 4227763 . TCCCTTCTC T, 948.03 . AS_QUALapprox=|962|0;AS_VarDP=0|22|0;DP=53;QUALapprox=962;RAW_GT_COUNT=0,0,1;RAW_MQandDP=184367,53;VarDP=22 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,22,0:22:71:0|1:4227763_TCCCTTCTC_T:962,71,0,962,71,962:4227763:0,0,7,15 +chrX 4227772 . C . . END=4227778 GT:DP:GQ:MIN_DP:PL 0/0:48:75:48:0,75,1125 +chrX 4227779 . C . . END=4227782 GT:DP:GQ:MIN_DP:PL 0/0:50:0:50:0,0,0 +chrX 4227783 . T . . END=4227789 GT:DP:GQ:MIN_DP:PL 0/0:51:84:51:0,84,1260 +chrX 4227790 . T . . END=4227803 GT:DP:GQ:MIN_DP:PL 0/0:53:0:53:0,0,0 +chrX 4227804 . CTTTTCT C, 1225.03 . AS_QUALapprox=|1239|0;AS_VarDP=0|29|0;DP=53;QUALapprox=1239;RAW_GT_COUNT=0,0,1;RAW_MQandDP=179052,53;VarDP=29 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,29,0:29:91:0|1:4227763_TCCCTTCTC_T:1239,91,0,1239,91,1239:4227763:0,0,7,22 +chrX 4227811 . T . . END=4227855 GT:DP:GQ:MIN_DP:PL 0/0:43:60:43:0,60,900 +chrX 4227856 . TTCTTTCTTTCTTTCTCTCTTTTTC T, 396.60 . AS_QUALapprox=|404|0;AS_VarDP=18|11|0;BaseQRankSum=1.692;DP=47;MQRankSum=-0.371;QUALapprox=404;RAW_GT_COUNT=0,1,0;RAW_MQandDP=155452,47;ReadPosRankSum=-0.540;VarDP=29 GT:AD:DP:GQ:PL:SB 0/1:18,11,0:29:99:404,0,721,459,756,1214:5,13,2,9 +chrX 4227864 . TTCTTTCTCTCTTTTTC *,T, 687 . AS_QUALapprox=|0|745|0;AS_VarDP=0|11|18|0;DP=43;QUALapprox=1149;RAW_GT_COUNT=0,0,1;RAW_MQandDP=141052,43;VarDP=29 GT:AD:DP:GQ:PL:SB 1/2:0,11,18,0:29:99:1149,697,722,460,0,404,1156,730,459,1182:0,0,7,22 +chrX 4227881 . T . . END=4228069 GT:DP:GQ:MIN_DP:PL 0/0:43:66:43:0,66,1080 +chrX 4228070 . T C, 1195.06 . AS_QUALapprox=|1209|0;AS_VarDP=0|38|0;DP=40;QUALapprox=1209;RAW_GT_COUNT=0,0,1;RAW_MQandDP=144000,40;VarDP=38 GT:AD:DP:GQ:PL:SB 1/1:0,38,0:38:99:1209,113,0,1209,113,1209:0,0,24,14 +chrX 4228071 . T . . END=4228496 GT:DP:GQ:MIN_DP:PL 0/0:53:77:53:0,77,1042 +chrX 4228497 . G A, 1748.06 . AS_QUALapprox=|1762|0;AS_VarDP=0|53|0;DP=53;QUALapprox=1762;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1762,159,0,1762,159,1762:0,0,26,27 +chrX 4228498 . T . . END=4228523 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 4228524 . T C, 1742.06 . AS_QUALapprox=|1756|0;AS_VarDP=0|53|0;DP=55;QUALapprox=1756;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1756,159,0,1756,159,1756:0,0,26,27 +chrX 4228525 . A . . END=4229269 GT:DP:GQ:MIN_DP:PL 0/0:38:47:38:0,47,879 +chrX 4229270 . A G, 1057.06 . AS_QUALapprox=|1071|0;AS_VarDP=1|36|0;BaseQRankSum=-0.675;DP=39;MQRankSum=0.000;QUALapprox=1071;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140400,39;ReadPosRankSum=-0.328;VarDP=37 GT:AD:DP:GQ:PL:SB 1/1:1,36,0:37:76:1071,76,0,1074,108,1106:1,0,15,21 +chrX 4229271 . T . . END=4229304 GT:DP:GQ:MIN_DP:PL 0/0:34:78:34:0,78,1170 +chrX 4229305 . C T, 1187.06 . AS_QUALapprox=|1201|0;AS_VarDP=1|37|0;BaseQRankSum=-0.311;DP=38;MQRankSum=0.000;QUALapprox=1201;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;ReadPosRankSum=-1.551;VarDP=38 GT:AD:DP:GQ:PL:SB 1/1:1,37,0:38:80:1201,80,0,1204,111,1236:1,0,16,21 +chrX 4229306 . G . . END=4229337 GT:DP:GQ:MIN_DP:PL 0/0:36:91:36:0,91,1138 +chrX 4229338 . C T, 1118.06 . AS_QUALapprox=|1132|0;AS_VarDP=1|35|0;BaseQRankSum=-0.321;DP=38;MQRankSum=0.000;QUALapprox=1132;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;ReadPosRankSum=-0.386;VarDP=36 GT:AD:DP:GQ:PL:SB 1/1:1,35,0:36:73:1132,73,0,1135,105,1167:1,0,14,21 +chrX 4229339 . G . . END=4230130 GT:DP:GQ:MIN_DP:PL 0/0:49:81:49:0,81,1146 +chrX 4230131 . T G, 1743.06 . AS_QUALapprox=|1757|0;AS_VarDP=0|54|0;DP=56;QUALapprox=1757;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:1757,162,0,1757,162,1757:0,0,24,30 +chrX 4230132 . C . . END=4230390 GT:DP:GQ:MIN_DP:PL 0/0:47:92:47:0,92,1190 +chrX 4230391 . T C, 2145.06 . AS_QUALapprox=|2159|0;AS_VarDP=0|48|0;DP=50;QUALapprox=2159;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=48 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,48,0:48:99:0|1:4230391_T_C:2159,144,0,2159,144,2159:4230391:0,0,26,22 +chrX 4230392 . G C, 2145.06 . AS_QUALapprox=|2159|0;AS_VarDP=0|48|0;DP=51;QUALapprox=2159;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=48 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,48,0:48:99:0|1:4230391_T_C:2159,144,0,2159,144,2159:4230391:0,0,26,22 +chrX 4230393 . T . . END=4231321 GT:DP:GQ:MIN_DP:PL 0/0:58:71:58:0,71,1414 +chrX 4231322 . G A, 1932.06 . AS_QUALapprox=|1946|0;AS_VarDP=0|58|0;DP=59;QUALapprox=1946;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=58 GT:AD:DP:GQ:PL:SB 1/1:0,58,0:58:99:1946,174,0,1946,174,1946:0,0,32,26 +chrX 4231323 . A . . END=4231336 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 4231337 . C A, 1815.06 . AS_QUALapprox=|1829|0;AS_VarDP=0|56|0;DP=58;QUALapprox=1829;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1829,168,0,1829,168,1829:0,0,32,24 +chrX 4231338 . A . . END=4231529 GT:DP:GQ:MIN_DP:PL 0/0:55:98:55:0,98,1474 +chrX 4231530 . A G, 1563.06 . AS_QUALapprox=|1577|0;AS_VarDP=0|49|0;DP=52;QUALapprox=1577;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1577,147,0,1577,147,1577:0,0,23,26 +chrX 4231531 . C . . END=4231679 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,101,1549 +chrX 4231680 . TA T, 1982.03 . AS_QUALapprox=|1996|0;AS_VarDP=0|54|0;DP=57;QUALapprox=1996;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:1996,162,0,1996,162,1996:0,0,26,28 +chrX 4231682 . A . . END=4232526 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,117,1538 +chrX 4232527 . A G, 1866.06 . AS_QUALapprox=|1880|0;AS_VarDP=0|59|0;DP=59;QUALapprox=1880;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1880,176,0,1880,176,1880:0,0,39,20 +chrX 4232528 . C . . END=4232648 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 4232649 . C T, 1822.06 . AS_QUALapprox=|1836|0;AS_VarDP=1|57|0;BaseQRankSum=2.388;DP=60;MQRankSum=0.000;QUALapprox=1836;RAW_GT_COUNT=0,0,1;RAW_MQandDP=215425,60;ReadPosRankSum=0.837;VarDP=58 GT:AD:DP:GQ:PL:SB 1/1:1,57,0:58:99:1836,164,0,1838,171,1845:0,1,25,32 +chrX 4232650 . G . . END=4232681 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 4232682 . G A, 1977.06 . AS_QUALapprox=|1991|0;AS_VarDP=0|59|0;DP=62;QUALapprox=1991;RAW_GT_COUNT=0,0,1;RAW_MQandDP=222625,62;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1991,177,0,1991,177,1991:0,0,27,32 +chrX 4232683 . G . . END=4232745 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 4232746 . G A, 1960.06 . AS_QUALapprox=|1974|0;AS_VarDP=0|61|0;DP=62;QUALapprox=1974;RAW_GT_COUNT=0,0,1;RAW_MQandDP=222625,62;VarDP=61 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:1974,183,0,1974,183,1974:0,0,25,36 +chrX 4232747 . C . . END=4232852 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 4232853 . A T, 1942.06 . AS_QUALapprox=|1956|0;AS_VarDP=0|59|0;DP=62;QUALapprox=1956;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1956,177,0,1956,177,1956:0,0,27,32 +chrX 4232854 . T . . END=4232868 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 4232869 . A G, 1782.06 . AS_QUALapprox=|1796|0;AS_VarDP=0|56|0;DP=57;QUALapprox=1796;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1796,167,0,1796,167,1796:0,0,27,29 +chrX 4232870 . C . . END=4233008 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,106,1454 +chrX 4233009 . G A, 1431.06 . AS_QUALapprox=|1445|0;AS_VarDP=0|43|0;DP=45;QUALapprox=1445;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162000,45;VarDP=43 GT:AD:DP:GQ:PL:SB 1/1:0,43,0:43:99:1445,129,0,1445,129,1445:0,0,19,24 +chrX 4233010 . T . . END=4233044 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,108,1420 +chrX 4233045 . T G, 1246.06 . AS_QUALapprox=|1260|0;AS_VarDP=0|40|0;DP=40;QUALapprox=1260;RAW_GT_COUNT=0,0,1;RAW_MQandDP=144000,40;VarDP=40 GT:AD:DP:GQ:PL:SB 1/1:0,40,0:40:99:1260,118,0,1260,118,1260:0,0,17,23 +chrX 4233046 . G . . END=4233263 GT:DP:GQ:MIN_DP:PL 0/0:49:84:49:0,84,1201 +chrX 4233264 . G C, 1525.06 . AS_QUALapprox=|1539|0;AS_VarDP=0|46|0;DP=47;QUALapprox=1539;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1539,138,0,1539,138,1539:0,0,30,16 +chrX 4233265 . G . . END=4233861 GT:DP:GQ:MIN_DP:PL 0/0:56:97:56:0,97,1360 +chrX 4233862 . A T, 1817.06 . AS_QUALapprox=|1831|0;AS_VarDP=0|55|0;DP=55;QUALapprox=1831;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1831,165,0,1831,165,1831:0,0,22,33 +chrX 4233863 . G . . END=4235000 GT:DP:GQ:MIN_DP:PL 0/0:58:82:58:0,82,1347 +chrX 4235001 . A G, 1455.06 . AS_QUALapprox=|1469|0;AS_VarDP=0|44|0;DP=46;QUALapprox=1469;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;VarDP=44 GT:AD:DP:GQ:PL:SB 1/1:0,44,0:44:99:1469,132,0,1469,132,1469:0,0,22,22 +chrX 4235002 . T . . END=4235137 GT:DP:GQ:MIN_DP:PL 0/0:44:43:44:0,43,1097 +chrX 4235138 . ATT A, 1337.03 . AS_QUALapprox=|1351|0;AS_VarDP=0|36|0;DP=36;QUALapprox=1351;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129600,36;VarDP=36 GT:AD:DP:GQ:PL:SB 1/1:0,36,0:36:99:1351,108,0,1351,108,1351:0,0,15,21 +chrX 4235141 . T . . END=4235287 GT:DP:GQ:MIN_DP:PL 0/0:45:66:45:0,66,1256 +chrX 4235288 . C T, 1565.06 . AS_QUALapprox=|1579|0;AS_VarDP=1|48|0;BaseQRankSum=2.674;DP=51;MQRankSum=0.000;QUALapprox=1579;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;ReadPosRankSum=0.955;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:1,48,0:49:99:1579,122,0,1582,144,1603:0,1,29,19 +chrX 4235289 . G . . END=4235499 GT:DP:GQ:MIN_DP:PL 0/0:27:20:23:0,20,360 +chrX 4235500 . TTA T, 1725.03 . AS_QUALapprox=|1739|0;AS_VarDP=1|41|0;BaseQRankSum=-0.112;DP=46;MQRankSum=-0.381;QUALapprox=1739;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151423,46;ReadPosRankSum=-0.083;VarDP=42 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:1,41,0:42:83:0|1:4235500_TTA_T:1739,83,0,1742,125,1784:4235500:1,0,21,20 +chrX 4235503 . T . . END=4235517 GT:DP:GQ:MIN_DP:PL 0/0:42:92:42:0,92,1361 +chrX 4235518 . GCGAATACCATTATTTTGTTCCTTCTTATGACTGAGTAGTATTCCATTATATATATATA G, 1822.03 . AS_QUALapprox=|1836|0;AS_VarDP=2|44|0;BaseQRankSum=-0.326;DP=46;MQRankSum=-0.612;QUALapprox=1836;RAW_GT_COUNT=0,0,1;RAW_MQandDP=150848,46;ReadPosRankSum=0.616;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:2,44,0:46:48:0|1:4235500_TTA_T:1836,48,0,1842,132,1926:4235500:1,1,23,21 +chrX 4235577 . T . . END=4235613 GT:DP:GQ:MIN_DP:PL 0/0:41:51:41:0,51,765 +chrX 4235614 . A ATG, 1610.03 . AS_QUALapprox=|1624|0;AS_VarDP=1|38|0;BaseQRankSum=-0.400;DP=39;MQRankSum=-0.441;QUALapprox=1624;RAW_GT_COUNT=0,0,1;RAW_MQandDP=125648,39;ReadPosRankSum=-0.578;VarDP=39 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:1,38,0:39:72:0|1:4235500_TTA_T:1624,72,0,1627,114,1669:4235500:0,1,16,22 +chrX 4235615 . T . . END=4237472 GT:DP:GQ:MIN_DP:PL 0/0:51:48:51:0,48,893 +chrX 4237473 . G A, 1986.06 . AS_QUALapprox=|2000|0;AS_VarDP=0|59|0;DP=59;QUALapprox=2000;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:2000,177,0,2000,177,2000:0,0,29,30 +chrX 4237474 . G . . END=4237544 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 4237545 . C T, 2074.06 . AS_QUALapprox=|2088|0;AS_VarDP=0|65|0;DP=66;QUALapprox=2088;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=65 GT:AD:DP:GQ:PL:SB 1/1:0,65,0:65:99:2088,195,0,2088,195,2088:0,0,27,38 +chrX 4237546 . C . . END=4237748 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,110,1653 +chrX 4237749 . G A, 2027.06 . AS_QUALapprox=|2041|0;AS_VarDP=0|62|0;DP=62;QUALapprox=2041;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:0,62,0:62:99:2041,186,0,2041,186,2041:0,0,35,27 +chrX 4237750 . G . . END=4238017 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,100,1410 +chrX 4238018 . T C, 1903.06 . AS_QUALapprox=|1917|0;AS_VarDP=0|58|0;DP=58;QUALapprox=1917;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=58 GT:AD:DP:GQ:PL:SB 1/1:0,58,0:58:99:1917,174,0,1917,174,1917:0,0,31,27 +chrX 4238019 . T . . END=4238353 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,114,1510 +chrX 4238354 . C G, 1695.06 . AS_QUALapprox=|1709|0;AS_VarDP=0|53|0;DP=54;QUALapprox=1709;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1709,158,0,1709,158,1709:0,0,31,22 +chrX 4238355 . T . . END=4238392 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 4238393 . G T, 2100.06 . AS_QUALapprox=|2114|0;AS_VarDP=0|64|0;DP=69;QUALapprox=2114;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=64 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:2114,192,0,2114,192,2114:0,0,38,26 +chrX 4238394 . C . . END=4238657 GT:DP:GQ:MIN_DP:PL 0/0:59:97:59:0,97,1463 +chrX 4238658 . T C, 2094.06 . AS_QUALapprox=|2108|0;AS_VarDP=0|48|0;DP=50;QUALapprox=2108;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=48 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,48,0:48:99:0|1:4238658_T_C:2108,144,0,2108,144,2108:4238658:0,0,24,24 +chrX 4238659 . C . . END=4238667 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,120,1800 +chrX 4238668 . T C, 2070.06 . AS_QUALapprox=|2084|0;AS_VarDP=0|47|0;DP=48;QUALapprox=2084;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,47,0:47:99:0|1:4238658_T_C:2084,141,0,2084,141,2084:4238658:0,0,23,24 +chrX 4238669 . C . . END=4239141 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,100,1414 +chrX 4239142 . CAA C, 1440.03 . AS_QUALapprox=|1454|0;AS_VarDP=0|40|0;DP=47;QUALapprox=1454;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;VarDP=40 GT:AD:DP:GQ:PL:SB 1/1:0,40,0:40:99:1454,121,0,1454,121,1454:0,0,18,22 +chrX 4239145 . A . . END=4239914 GT:DP:GQ:MIN_DP:PL 0/0:57:64:57:0,64,1340 +chrX 4239915 . G GAA, 2314.03 . AS_QUALapprox=|2328|0;AS_VarDP=0|52|0;DP=54;QUALapprox=2328;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:2328,156,0,2328,157,2328:0,0,29,23 +chrX 4239916 . A . . END=4240183 GT:DP:GQ:MIN_DP:PL 0/0:60:69:60:0,69,1139 +chrX 4240184 . T . . END=4240184 GT:DP:GQ:MIN_DP:PL 0/0:66:10:66:0,10,1726 +chrX 4240185 . T . . END=4240405 GT:DP:GQ:MIN_DP:PL 0/0:64:48:64:0,48,1483 +chrX 4240406 . G A, 1941.06 . AS_QUALapprox=|1955|0;AS_VarDP=1|61|0;BaseQRankSum=2.287;DP=63;MQRankSum=0.000;QUALapprox=1955;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;ReadPosRankSum=-1.118;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:1,61,0:62:99:1955,176,0,1958,183,1965:0,1,31,30 +chrX 4240407 . G . . END=4240511 GT:DP:GQ:MIN_DP:PL 0/0:68:46:68:0,46,1505 +chrX 4240512 . C T, 1433.06 . AS_QUALapprox=|1447|0;AS_VarDP=0|48|0;DP=49;QUALapprox=1447;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=48 GT:AD:DP:GQ:PL:SB 1/1:0,48,0:48:99:1447,142,0,1447,142,1447:0,0,23,25 +chrX 4240513 . G . . END=4240776 GT:DP:GQ:MIN_DP:PL 0/0:59:29:56:0,29,1438 +chrX 4240777 . T . . END=4240777 GT:DP:GQ:MIN_DP:PL 0/0:61:0:61:0,0,1364 +chrX 4240778 . G . . END=4240942 GT:DP:GQ:MIN_DP:PL 0/0:68:60:68:0,60,1800 +chrX 4240943 . C T, 2269.06 . AS_QUALapprox=|2283|0;AS_VarDP=0|53|0;DP=54;QUALapprox=2283;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,53,0:53:99:0|1:4240943_C_T:2283,159,0,2283,159,2283:4240943:0,0,27,26 +chrX 4240944 . T G, 2269.06 . AS_QUALapprox=|2283|0;AS_VarDP=0|53|0;DP=54;QUALapprox=2283;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,53,0:53:99:0|1:4240943_C_T:2283,159,0,2283,159,2283:4240943:0,0,27,26 +chrX 4240945 . C . . END=4240982 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,108,1620 +chrX 4240983 . C T, 1260.06 . AS_QUALapprox=|1274|0;AS_VarDP=0|41|0;DP=44;QUALapprox=1274;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158400,44;VarDP=41 GT:AD:DP:GQ:PL:SB 1/1:0,41,0:41:99:1274,121,0,1274,121,1274:0,0,25,16 +chrX 4240984 . A . . END=4241055 GT:DP:GQ:MIN_DP:PL 0/0:41:97:41:0,97,1157 +chrX 4241056 . G C, 1350.06 . AS_QUALapprox=|1364|0;AS_VarDP=1|44|0;BaseQRankSum=-0.479;DP=47;MQRankSum=0.000;QUALapprox=1364;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;ReadPosRankSum=0.039;VarDP=45 GT:AD:DP:GQ:PL:SB 1/1:1,44,0:45:99:1364,100,0,1367,131,1399:0,1,26,18 +chrX 4241057 . C . . END=4241111 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,117,1505 +chrX 4241112 . C G, 1539.06 . AS_QUALapprox=|1553|0;AS_VarDP=1|48|0;BaseQRankSum=-0.269;DP=50;MQRankSum=0.000;QUALapprox=1553;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;ReadPosRankSum=-0.814;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:1,48,0:49:99:1553,112,0,1556,143,1588:0,1,20,28 +chrX 4241113 . A . . END=4241287 GT:DP:GQ:MIN_DP:PL 0/0:70:78:70:0,78,1800 +chrX 4241288 . C T, 1991.06 . AS_QUALapprox=|2005|0;AS_VarDP=0|61|0;DP=64;QUALapprox=2005;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=61 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:2005,183,0,2005,183,2005:0,0,33,28 +chrX 4241289 . T . . END=4241761 GT:DP:GQ:MIN_DP:PL 0/0:62:85:62:0,85,1479 +chrX 4241762 . T A, 1708.06 . AS_QUALapprox=|1722|0;AS_VarDP=0|51|0;DP=63;QUALapprox=1722;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1722,153,0,1722,153,1722:0,0,21,30 +chrX 4241763 . C . . END=4241809 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 4241810 . T C, 1904.06 . AS_QUALapprox=|1918|0;AS_VarDP=0|60|0;DP=74;QUALapprox=1918;RAW_GT_COUNT=0,0,1;RAW_MQandDP=266400,74;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:1918,180,0,1918,180,1918:0,0,19,41 +chrX 4241811 . T . . END=4241892 GT:DP:GQ:MIN_DP:PL 0/0:48:34:46:0,34,1276 +chrX 4241893 . G . . END=4241897 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,1231 +chrX 4241898 . T . . END=4241898 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,114,1710 +chrX 4241899 . C . . END=4241900 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,1037 +chrX 4241901 . T . . END=4241901 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,117,1755 +chrX 4241902 . G . . END=4241905 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,1107 +chrX 4241906 . T . . END=4241906 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,120,1800 +chrX 4241907 . G . . END=4241910 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,992 +chrX 4241911 . C . . END=4241911 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,117,1755 +chrX 4241912 . T . . END=4241915 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,929 +chrX 4241916 . T . . END=4241916 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,120,1800 +chrX 4241917 . A . . END=4241917 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,988 +chrX 4241918 . C . . END=4241918 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,120,1800 +chrX 4241919 . C . . END=4241920 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,878 +chrX 4241921 . A . . END=4241921 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,120,1800 +chrX 4241922 . C . . END=4241922 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,884 +chrX 4241923 . A . . END=4241923 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,117,1755 +chrX 4241924 . C . . END=4241929 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,844 +chrX 4241930 . T . . END=4241930 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,114,1710 +chrX 4241931 . T . . END=4241933 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,780 +chrX 4241934 . T . . END=4241934 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,108,1620 +chrX 4241935 . C . . END=4241935 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,794 +chrX 4241936 . A . . END=4241936 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,102,1361 +chrX 4241937 . C . . END=4241937 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,655 +chrX 4241938 . T . . END=4241938 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,114,1710 +chrX 4241939 . T . . END=4241941 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,621 +chrX 4241942 . T . . END=4241942 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,117,1755 +chrX 4241943 . T . . END=4241947 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,490 +chrX 4241948 . A . . END=4241948 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,112,1330 +chrX 4241949 . C . . END=4241953 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,412 +chrX 4241954 . G . . END=4241956 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,115,1326 +chrX 4241957 . G . . END=4241958 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,347 +chrX 4241959 . C . . END=4241959 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,120,1800 +chrX 4241960 . T . . END=4241974 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,168 +chrX 4241975 . A . . END=4241975 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,120,1800 +chrX 4241976 . T . . END=4241977 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,144 +chrX 4241978 . T . . END=4241978 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,120,1800 +chrX 4241979 . A . . END=4241981 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,173 +chrX 4241982 . A . . END=4241982 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,117,1755 +chrX 4241983 . C . . END=4241995 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,29 +chrX 4241996 . C . . END=4241996 GT:DP:GQ:MIN_DP:PL 0/0:37:54:37:0,54,810 +chrX 4241997 . T . . END=4241998 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,0 +chrX 4241999 . A . . END=4241999 GT:DP:GQ:MIN_DP:PL 0/0:38:60:38:0,60,900 +chrX 4242000 . G . . END=4242003 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,15 +chrX 4242004 . G . . END=4242006 GT:DP:GQ:MIN_DP:PL 0/0:39:72:39:0,72,1080 +chrX 4242007 . T . . END=4242012 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,250 +chrX 4242013 . A . . END=4242013 GT:DP:GQ:MIN_DP:PL 0/0:39:75:39:0,75,1125 +chrX 4242014 . A . . END=4242019 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,362 +chrX 4242020 . T . . END=4242020 GT:DP:GQ:MIN_DP:PL 0/0:41:78:41:0,78,1170 +chrX 4242021 . A . . END=4242023 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,467 +chrX 4242024 . A . . END=4242025 GT:DP:GQ:MIN_DP:PL 0/0:44:87:44:0,87,1305 +chrX 4242026 . A . . END=4242030 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,427 +chrX 4242031 . G . . END=4242032 GT:DP:GQ:MIN_DP:PL 0/0:42:90:42:0,90,1350 +chrX 4242033 . G . . END=4242035 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,590 +chrX 4242036 . G . . END=4242036 GT:DP:GQ:MIN_DP:PL 0/0:45:90:45:0,90,1350 +chrX 4242037 . CA C, 476.03 . AS_QUALapprox=|490|0;AS_VarDP=0|17|0;DP=37;QUALapprox=490;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133200,37;VarDP=17 GT:AD:DP:GQ:PL:SB 1/1:0,17,0:17:51:490,51,0,490,51,490:0,0,13,4 +chrX 4242039 . A . . END=4242074 GT:DP:GQ:MIN_DP:PL 0/0:26:50:26:0,50,571 +chrX 4242075 . A G, 944.06 . AS_QUALapprox=|958|0;AS_VarDP=0|29|0;DP=48;QUALapprox=958;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=29 GT:AD:DP:GQ:PL:SB 1/1:0,29,0:29:87:958,87,0,958,87,958:0,0,21,8 +chrX 4242076 . T . . END=4242080 GT:DP:GQ:MIN_DP:PL 0/0:41:51:41:0,51,1181 +chrX 4242081 . C . . END=4242081 GT:DP:GQ:MIN_DP:PL 0/0:41:19:41:0,19,1157 +chrX 4242082 . T . . END=4242160 GT:DP:GQ:MIN_DP:PL 0/0:46:45:46:0,45,1236 +chrX 4242161 . G A, 2242.06 . AS_QUALapprox=|2256|0;AS_VarDP=0|52|0;DP=65;QUALapprox=2256;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,52,0:52:99:0|1:4242161_G_A:2256,156,0,2256,156,2256:4242161:0,0,35,17 +chrX 4242162 . A . . END=4242169 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 4242170 . A G, 2150.06 . AS_QUALapprox=|2164|0;AS_VarDP=0|49|0;DP=62;QUALapprox=2164;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,49,0:49:99:0|1:4242161_G_A:2164,147,0,2164,147,2164:4242161:0,0,32,17 +chrX 4242171 . C . . END=4242451 GT:DP:GQ:MIN_DP:PL 0/0:62:21:54:0,21,315 +chrX 4242452 . C CTA, 2450.03 . AS_QUALapprox=|2464|0;AS_VarDP=0|55|0;DP=61;QUALapprox=2464;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,55,0:55:99:0|1:4242452_C_CTA:2464,165,0,2464,166,2465:4242452:0,0,23,32 +chrX 4242453 . T . . END=4242453 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 4242454 . C CTA, 2451.03 . AS_QUALapprox=|2465|0;AS_VarDP=0|55|0;DP=57;QUALapprox=2465;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,55,0:55:99:0|1:4242452_C_CTA:2465,166,0,2465,166,2465:4242452:0,0,23,32 +chrX 4242455 . C . . END=4242455 GT:DP:GQ:MIN_DP:PL 0/0:55:0:55:0,0,1366 +chrX 4242456 . C . . END=4242788 GT:DP:GQ:MIN_DP:PL 0/0:55:57:55:0,57,1477 +chrX 4242789 . T G, 1704.06 . AS_QUALapprox=|1718|0;AS_VarDP=0|52|0;DP=58;QUALapprox=1718;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1718,156,0,1718,156,1718:0,0,25,27 +chrX 4242790 . T . . END=4243193 GT:DP:GQ:MIN_DP:PL 0/0:59:92:59:0,92,1320 +chrX 4243194 . GA G, 2063.03 . AS_QUALapprox=|2077|0;AS_VarDP=0|64|0;DP=66;QUALapprox=2077;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=64 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:2077,193,0,2077,193,2077:0,0,40,24 +chrX 4243196 . A . . END=4243811 GT:DP:GQ:MIN_DP:PL 0/0:57:87:57:0,87,1484 +chrX 4243812 . G A, 1731.06 . AS_QUALapprox=|1745|0;AS_VarDP=1|54|0;BaseQRankSum=2.117;DP=56;MQRankSum=0.000;QUALapprox=1745;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;ReadPosRankSum=0.284;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:1,54,0:55:99:1745,140,0,1748,162,1770:1,0,23,31 +chrX 4243813 . C . . END=4243833 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 4243834 . G A, 1578.06 . AS_QUALapprox=|1592|0;AS_VarDP=2|50|0;BaseQRankSum=-0.472;DP=54;MQRankSum=0.000;QUALapprox=1592;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;ReadPosRankSum=1.547;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:2,50,0:52:86:1592,86,0,1598,150,1661:2,0,26,24 +chrX 4243835 . C . . END=4244121 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1579 +chrX 4244122 . C T, 2035.06 . AS_QUALapprox=|2049|0;AS_VarDP=0|59|0;DP=59;QUALapprox=2049;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:2049,177,0,2049,177,2049:0,0,35,24 +chrX 4244123 . T . . END=4244277 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,100,1480 +chrX 4244278 . A G, 1776.06 . AS_QUALapprox=|1790|0;AS_VarDP=2|57|0;BaseQRankSum=2.919;DP=60;MQRankSum=0.000;QUALapprox=1790;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;ReadPosRankSum=-1.236;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:2,57,0:59:99:1790,126,0,1796,170,1840:1,1,28,29 +chrX 4244279 . C . . END=4244894 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,109,1419 +chrX 4244895 . A G, 1677.06 . AS_QUALapprox=|1691|0;AS_VarDP=0|51|0;DP=52;QUALapprox=1691;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1691,153,0,1691,153,1691:0,0,25,26 +chrX 4244896 . T . . END=4245096 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,106,1504 +chrX 4245097 . T C, 1462.06 . AS_QUALapprox=|1476|0;AS_VarDP=0|49|0;DP=51;QUALapprox=1476;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1476,146,0,1476,146,1476:0,0,28,21 +chrX 4245098 . A . . END=4245342 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,112,1604 +chrX 4245343 . C T, 1934.06 . AS_QUALapprox=|1948|0;AS_VarDP=0|45|0;DP=45;QUALapprox=1948;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162000,45;VarDP=45 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,45,0:45:99:0|1:4245343_C_T:1948,135,0,1948,135,1948:4245343:0,0,22,23 +chrX 4245344 . G . . END=4245351 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,117,1755 +chrX 4245352 . A G, 1935.06 . AS_QUALapprox=|1949|0;AS_VarDP=0|45|0;DP=46;QUALapprox=1949;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;VarDP=45 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,45,0:45:99:0|1:4245343_C_T:1949,135,0,1949,135,1949:4245343:0,0,22,23 +chrX 4245353 . A . . END=4245489 GT:DP:GQ:MIN_DP:PL 0/0:49:89:49:0,89,1476 +chrX 4245490 . G A, 1588.06 . AS_QUALapprox=|1602|0;AS_VarDP=0|48|0;DP=50;QUALapprox=1602;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=48 GT:AD:DP:GQ:PL:SB 1/1:0,48,0:48:99:1602,144,0,1602,144,1602:0,0,23,25 +chrX 4245491 . A . . END=4246021 GT:DP:GQ:MIN_DP:PL 0/0:50:71:50:0,71,1062 +chrX 4246022 . C T, 1426.06 . AS_QUALapprox=|1440|0;AS_VarDP=0|42|0;DP=42;QUALapprox=1440;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151200,42;VarDP=42 GT:AD:DP:GQ:PL:SB 1/1:0,42,0:42:99:1440,126,0,1440,126,1440:0,0,25,17 +chrX 4246023 . A . . END=4246188 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,110,1414 +chrX 4246189 . T C, 1826.06 . AS_QUALapprox=|1840|0;AS_VarDP=0|57|0;DP=58;QUALapprox=1840;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1840,170,0,1840,170,1840:0,0,29,28 +chrX 4246190 . G . . END=4246581 GT:DP:GQ:MIN_DP:PL 0/0:41:24:34:0,24,360 +chrX 4246582 . A G,T, 1266.04 . AS_QUALapprox=|1280|559|0;AS_VarDP=0|28|3|0;DP=31;QUALapprox=1280;RAW_GT_COUNT=0,0,1;RAW_MQandDP=101138,31;VarDP=31 GT:AD:DP:GQ:PL:SB 1/1:0,28,3,0:31:8:1280,93,0,803,8,721,1108,91,788,1043:0,0,17,14 +chrX 4246583 . T . . END=4246584 GT:DP:GQ:MIN_DP:PL 0/0:30:48:30:0,48,720 +chrX 4246585 . G T, 1485.06 . AS_QUALapprox=|1499|0;AS_VarDP=0|34|0;DP=34;QUALapprox=1499;RAW_GT_COUNT=0,0,1;RAW_MQandDP=104403,34;VarDP=34 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,34,0:34:99:0|1:4246585_G_T:1499,102,0,1499,102,1499:4246585:0,0,20,14 +chrX 4246586 . T . . END=4246589 GT:DP:GQ:MIN_DP:PL 0/0:32:66:32:0,66,990 +chrX 4246590 . C CTTTTTT, 1471.03 . AS_QUALapprox=|1485|0;AS_VarDP=0|33|0;DP=33;QUALapprox=1485;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100803,33;VarDP=33 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,33,0:33:99:0|1:4246585_G_T:1485,99,0,1485,99,1485:4246585:0,0,19,14 +chrX 4246591 . T . . END=4246600 GT:DP:GQ:MIN_DP:PL 0/0:38:15:38:0,15,225 +chrX 4246601 . T . . END=4246607 GT:DP:GQ:MIN_DP:PL 0/0:40:30:39:0,30,450 +chrX 4246608 . G . . END=4246611 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,0 +chrX 4246612 . T . . END=4246612 GT:DP:GQ:MIN_DP:PL 0/0:40:57:40:0,57,855 +chrX 4246613 . G . . END=4246615 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,99 +chrX 4246616 . G . . END=4246617 GT:DP:GQ:MIN_DP:PL 0/0:24:37:24:0,37,744 +chrX 4246618 . C . . END=4246618 GT:DP:GQ:MIN_DP:PL 0/0:23:10:23:0,10,671 +chrX 4246619 . T . . END=4246621 GT:DP:GQ:MIN_DP:PL 0/0:25:40:25:0,40,780 +chrX 4246622 . C . . END=4246622 GT:DP:GQ:MIN_DP:PL 0/0:26:19:26:0,19,775 +chrX 4246623 . T . . END=4246690 GT:DP:GQ:MIN_DP:PL 0/0:35:56:35:0,56,859 +chrX 4246691 . G . . END=4246691 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,1261 +chrX 4246692 . C . . END=4246779 GT:DP:GQ:MIN_DP:PL 0/0:49:75:49:0,75,1412 +chrX 4246780 . A G, 1428.06 . AS_QUALapprox=|1442|0;AS_VarDP=0|43|0;DP=45;QUALapprox=1442;RAW_GT_COUNT=0,0,1;RAW_MQandDP=155534,45;VarDP=43 GT:AD:DP:GQ:PL:SB 1/1:0,43,0:43:99:1442,129,0,1442,129,1442:0,0,20,23 +chrX 4246781 . G . . END=4246984 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 4246985 . A G, 1741.06 . AS_QUALapprox=|1755|0;AS_VarDP=1|57|0;BaseQRankSum=-0.661;DP=59;MQRankSum=0.000;QUALapprox=1755;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;ReadPosRankSum=0.418;VarDP=58 GT:AD:DP:GQ:PL:SB 1/1:1,57,0:58:99:1755,139,0,1758,171,1790:0,1,27,30 +chrX 4246986 . T . . END=4248360 GT:DP:GQ:MIN_DP:PL 0/0:52:68:52:0,68,1151 +chrX 4248361 . T C, 1256.06 . AS_QUALapprox=|1270|0;AS_VarDP=0|40|0;DP=41;QUALapprox=1270;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147600,41;VarDP=40 GT:AD:DP:GQ:PL:SB 1/1:0,40,0:40:99:1270,120,0,1270,120,1270:0,0,17,23 +chrX 4248362 . G . . END=4249243 GT:DP:GQ:MIN_DP:PL 0/0:56:90:56:0,90,1190 +chrX 4249244 . A G, 1553.06 . AS_QUALapprox=|1567|0;AS_VarDP=1|48|0;BaseQRankSum=2.475;DP=49;MQRankSum=0.000;QUALapprox=1567;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;ReadPosRankSum=-0.672;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:1,48,0:49:99:1567,137,0,1569,144,1576:0,1,23,25 +chrX 4249245 . A . . END=4249417 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 4249418 . G A, 2076.06 . AS_QUALapprox=|2090|0;AS_VarDP=0|62|0;DP=63;QUALapprox=2090;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:0,62,0:62:99:2090,186,0,2090,186,2090:0,0,28,34 +chrX 4249419 . T . . END=4250381 GT:DP:GQ:MIN_DP:PL 0/0:53:70:53:0,70,1038 +chrX 4250382 . A . . END=4250382 GT:DP:GQ:MIN_DP:PL 0/0:48:15:48:0,15,1249 +chrX 4250383 . T . . END=4250383 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 4250384 . A . . END=4250384 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,1119 +chrX 4250385 . C CTTA, 1990.03 . AS_QUALapprox=|2004|0;AS_VarDP=1|46|0;BaseQRankSum=-0.776;DP=50;MQRankSum=0.000;QUALapprox=2004;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;ReadPosRankSum=-1.106;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:1,46,0:47:96:2004,96,0,2007,138,2049:0,1,23,23 +chrX 4250386 . T . . END=4250488 GT:DP:GQ:MIN_DP:PL 0/0:54:76:54:0,76,1384 +chrX 4250489 . A C, 560.64 . AS_QUALapprox=|568|0;AS_VarDP=31|25|0;BaseQRankSum=-0.226;DP=59;MQRankSum=0.000;QUALapprox=568;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-0.486;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:31,25,0:56:99:568,0,751,659,825,1485:19,12,12,13 +chrX 4250490 . T . . END=4250580 GT:DP:GQ:MIN_DP:PL 0/0:47:84:47:0,84,1221 +chrX 4250581 . A C, 1236.06 . AS_QUALapprox=|1250|0;AS_VarDP=0|40|0;DP=42;QUALapprox=1250;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151200,42;VarDP=40 GT:AD:DP:GQ:PL:SB 1/1:0,40,0:40:99:1250,118,0,1250,118,1250:0,0,17,23 +chrX 4250582 . T . . END=4252041 GT:DP:GQ:MIN_DP:PL 0/0:61:81:61:0,81,1066 +chrX 4252042 . A G, 1716.06 . AS_QUALapprox=|1730|0;AS_VarDP=0|54|0;DP=57;QUALapprox=1730;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:1730,161,0,1730,161,1730:0,0,26,28 +chrX 4252043 . T . . END=4252414 GT:DP:GQ:MIN_DP:PL 0/0:53:94:53:0,94,1275 +chrX 4252415 . T C, 1475.06 . AS_QUALapprox=|1489|0;AS_VarDP=1|46|0;BaseQRankSum=2.537;DP=51;MQRankSum=0.000;QUALapprox=1489;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;ReadPosRankSum=1.143;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:1,46,0:47:99:1489,130,0,1492,137,1499:0,1,29,17 +chrX 4252416 . A . . END=4252855 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,106,1370 +chrX 4252856 . A G, 1831.06 . AS_QUALapprox=|1845|0;AS_VarDP=1|59|0;BaseQRankSum=-0.510;DP=61;MQRankSum=0.000;QUALapprox=1845;RAW_GT_COUNT=0,0,1;RAW_MQandDP=218209,61;ReadPosRankSum=-1.444;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:1,59,0:60:99:1845,145,0,1848,176,1880:0,1,34,25 +chrX 4252857 . A . . END=4253136 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 4253137 . A C, 2075.06 . AS_QUALapprox=|2089|0;AS_VarDP=0|64|0;DP=65;QUALapprox=2089;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=64 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:2089,191,0,2089,191,2089:0,0,35,29 +chrX 4253138 . C . . END=4253442 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,104,1513 +chrX 4253443 . C T, 1617.06 . AS_QUALapprox=|1631|0;AS_VarDP=0|50|0;DP=55;QUALapprox=1631;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1631,150,0,1631,150,1631:0,0,27,23 +chrX 4253444 . T . . END=4253761 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 4253762 . C T, 2609.06 . AS_QUALapprox=|2623|0;AS_VarDP=0|80|0;DP=82;QUALapprox=2623;RAW_GT_COUNT=0,0,1;RAW_MQandDP=295200,82;VarDP=80 GT:AD:DP:GQ:PL:SB 1/1:0,80,0:80:99:2623,240,0,2623,240,2623:0,0,41,39 +chrX 4253763 . T . . END=4253784 GT:DP:GQ:MIN_DP:PL 0/0:79:99:79:0,120,1800 +chrX 4253785 . A T, 2507.06 . AS_QUALapprox=|2521|0;AS_VarDP=0|76|0;DP=78;QUALapprox=2521;RAW_GT_COUNT=0,0,1;RAW_MQandDP=280800,78;VarDP=76 GT:AD:DP:GQ:PL:SB 1/1:0,76,0:76:99:2521,229,0,2521,229,2521:0,0,40,36 +chrX 4253786 . C . . END=4254026 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,111,1465 +chrX 4254027 . C T, 553.64 . AS_QUALapprox=|561|0;AS_VarDP=21|20|0;BaseQRankSum=1.380;DP=43;MQRankSum=0.000;QUALapprox=561;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154800,43;ReadPosRankSum=-0.822;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:21,20,0:41:99:561,0,567,625,627,1251:10,11,9,11 +chrX 4254028 . G . . END=4254598 GT:DP:GQ:MIN_DP:PL 0/0:51:62:51:0,62,909 +chrX 4254599 . ATGTG A, 1722.03 . AS_QUALapprox=|1736|0;AS_VarDP=0|39|0;DP=50;QUALapprox=1736;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=39 GT:AD:DP:GQ:PL:SB 1/1:0,39,0:39:99:1736,118,0,1736,118,1736:0,0,22,17 +chrX 4254604 . T . . END=4254985 GT:DP:GQ:MIN_DP:PL 0/0:48:89:48:0,89,1250 +chrX 4254986 . A C, 1375.06 . AS_QUALapprox=|1389|0;AS_VarDP=0|43|0;DP=44;QUALapprox=1389;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158400,44;VarDP=43 GT:AD:DP:GQ:PL:SB 1/1:0,43,0:43:99:1389,128,0,1389,128,1389:0,0,25,18 +chrX 4254987 . T . . END=4255676 GT:DP:GQ:MIN_DP:PL 0/0:53:94:53:0,94,1319 +chrX 4255677 . A G, 1429.06 . AS_QUALapprox=|1443|0;AS_VarDP=0|45|0;DP=47;QUALapprox=1443;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;VarDP=45 GT:AD:DP:GQ:PL:SB 1/1:0,45,0:45:99:1443,134,0,1443,134,1443:0,0,25,20 +chrX 4255678 . G . . END=4256256 GT:DP:GQ:MIN_DP:PL 0/0:58:93:58:0,93,1524 +chrX 4256257 . G A, 1573.06 . AS_QUALapprox=|1587|0;AS_VarDP=0|49|0;DP=50;QUALapprox=1587;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1587,146,0,1587,146,1587:0,0,24,25 +chrX 4256258 . T . . END=4256330 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,112,1291 +chrX 4256331 . T G, 1487.06 . AS_QUALapprox=|1501|0;AS_VarDP=0|48|0;DP=50;QUALapprox=1501;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=48 GT:AD:DP:GQ:PL:SB 1/1:0,48,0:48:99:1501,144,0,1501,144,1501:0,0,24,24 +chrX 4256332 . T . . END=4256410 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,112,1341 +chrX 4256411 . G T, 2021.06 . AS_QUALapprox=|2035|0;AS_VarDP=0|63|0;DP=64;QUALapprox=2035;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=63 GT:AD:DP:GQ:PL:SB 1/1:0,63,0:63:99:2035,189,0,2035,189,2035:0,0,29,34 +chrX 4256412 . A . . END=4257009 GT:DP:GQ:MIN_DP:PL 0/0:56:71:56:0,71,1222 +chrX 4257010 . A C, 1901.06 . AS_QUALapprox=|1915|0;AS_VarDP=0|61|0;DP=63;QUALapprox=1915;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=61 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:1915,183,0,1915,183,1915:0,0,25,36 +chrX 4257011 . G . . END=4257343 GT:DP:GQ:MIN_DP:PL 0/0:60:83:60:0,83,1290 +chrX 4257344 . G A, 813.64 . AS_QUALapprox=|821|0;AS_VarDP=32|31|0;BaseQRankSum=0.515;DP=64;MQRankSum=0.000;QUALapprox=821;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=-0.474;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:32,31,0:63:99:821,0,852,917,945,1862:20,12,14,17 +chrX 4257345 . G . . END=4257462 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 4257463 . G A, 1762.06 . AS_QUALapprox=|1776|0;AS_VarDP=0|54|0;DP=55;QUALapprox=1776;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:1776,162,0,1776,162,1776:0,0,23,31 +chrX 4257464 . A . . END=4258369 GT:DP:GQ:MIN_DP:PL 0/0:55:71:55:0,71,1415 +chrX 4258370 . G A, 1937.06 . AS_QUALapprox=|1951|0;AS_VarDP=0|59|0;DP=60;QUALapprox=1951;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1951,177,0,1951,177,1951:0,0,27,32 +chrX 4258371 . G . . END=4259291 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,109,1529 +chrX 4259292 . T C, 2045.06 . AS_QUALapprox=|2059|0;AS_VarDP=0|63|0;DP=64;QUALapprox=2059;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=63 GT:AD:DP:GQ:PL:SB 1/1:0,63,0:63:99:2059,189,0,2059,189,2059:0,0,34,29 +chrX 4259293 . G . . END=4259732 GT:DP:GQ:MIN_DP:PL 0/0:52:63:52:0,63,1150 +chrX 4259733 . CATATA C, 2212.03 . AS_QUALapprox=|2226|0;AS_VarDP=1|50|0;DP=55;MQRankSum=0.000;QUALapprox=2226;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:1,50,0:51:99:2226,129,0,2229,151,2251:0,1,23,27 +chrX 4259739 . A . . END=4262529 GT:DP:GQ:MIN_DP:PL 0/0:58:48:58:0,48,1240 +chrX 4262530 . G A, 1568.06 . AS_QUALapprox=|1582|0;AS_VarDP=0|49|0;DP=54;QUALapprox=1582;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1582,146,0,1582,146,1582:0,0,26,23 +chrX 4262531 . T . . END=4262727 GT:DP:GQ:MIN_DP:PL 0/0:49:66:49:0,66,1385 +chrX 4262728 . G GGGAGACC, 1875.03 . AS_QUALapprox=|1889|0;AS_VarDP=0|42|0;DP=47;QUALapprox=1889;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;VarDP=42 GT:AD:DP:GQ:PL:SB 1/1:0,42,0:42:99:1889,126,0,1890,126,1890:0,0,18,24 +chrX 4262729 . G . . END=4262966 GT:DP:GQ:MIN_DP:PL 0/0:37:26:32:0,26,862 +chrX 4262967 . T . . END=4262968 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,690 +chrX 4262969 . A . . END=4262970 GT:DP:GQ:MIN_DP:PL 0/0:41:89:41:0,89,1286 +chrX 4262971 . A . . END=4262971 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,1048 +chrX 4262972 . A . . END=4262972 GT:DP:GQ:MIN_DP:PL 0/0:41:39:41:0,39,1126 +chrX 4262973 . G . . END=4262973 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,702 +chrX 4262974 . G GAA, 797.03 . AS_QUALapprox=|811|0;AS_VarDP=0|27|0;DP=38;QUALapprox=811;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133904,38;VarDP=27 GT:AD:DP:GQ:PL:SB 1/1:0,27,0:27:80:811,80,0,811,81,811:0,0,14,13 +chrX 4262975 . A . . END=4263022 GT:DP:GQ:MIN_DP:PL 0/0:42:32:42:0,32,1144 +chrX 4263023 . T . . END=4263023 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,1013 +chrX 4263024 . A . . END=4263752 GT:DP:GQ:MIN_DP:PL 0/0:48:61:48:0,61,1157 +chrX 4263753 . T C, 1832.06 . AS_QUALapprox=|1846|0;AS_VarDP=0|56|0;DP=57;QUALapprox=1846;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1846,168,0,1846,168,1846:0,0,25,31 +chrX 4263754 . A . . END=4264014 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,118,1603 +chrX 4264015 . T C, 1791.06 . AS_QUALapprox=|1805|0;AS_VarDP=0|57|0;DP=58;QUALapprox=1805;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1805,170,0,1805,170,1805:0,0,27,30 +chrX 4264016 . T . . END=4264366 GT:DP:GQ:MIN_DP:PL 0/0:52:87:52:0,87,1186 +chrX 4264367 . G A, 1986.06 . AS_QUALapprox=|2000|0;AS_VarDP=0|60|0;DP=62;QUALapprox=2000;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:2000,180,0,2000,180,2000:0,0,24,36 +chrX 4264368 . G . . END=4264391 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 4264392 . T A, 1930.06 . AS_QUALapprox=|1944|0;AS_VarDP=0|61|0;DP=65;QUALapprox=1944;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=61 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:1944,182,0,1944,182,1944:0,0,30,31 +chrX 4264393 . C . . END=4265347 GT:DP:GQ:MIN_DP:PL 0/0:58:72:58:0,72,1428 +chrX 4265348 . G C, 828.64 . AS_QUALapprox=|836|0;AS_VarDP=19|30|0;BaseQRankSum=-0.259;DP=53;MQRankSum=0.000;QUALapprox=836;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=-0.934;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:19,30,0:49:99:836,0,468,893,559,1451:9,10,14,16 +chrX 4265349 . A . . END=4266307 GT:DP:GQ:MIN_DP:PL 0/0:57:87:57:0,87,1493 +chrX 4266308 . A G, 1433.06 . AS_QUALapprox=|1447|0;AS_VarDP=0|46|0;DP=47;QUALapprox=1447;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1447,137,0,1447,137,1447:0,0,26,20 +chrX 4266309 . A . . END=4267402 GT:DP:GQ:MIN_DP:PL 0/0:45:38:29:0,38,799 +chrX 4267403 . A G, 246.64 . AS_QUALapprox=|254|0;AS_VarDP=24|14|0;BaseQRankSum=-2.215;DP=40;MQRankSum=0.000;QUALapprox=254;RAW_GT_COUNT=0,1,0;RAW_MQandDP=144000,40;ReadPosRankSum=-1.438;VarDP=38 GT:AD:DP:GQ:PL:SB 0/1:24,14,0:38:99:254,0,676,325,716,1042:9,15,5,9 +chrX 4267404 . T . . END=4267656 GT:DP:GQ:MIN_DP:PL 0/0:17:21:11:0,21,315 +chrX 4267657 . T . . END=4267690 GT:DP:GQ:MIN_DP:PL 0/0:6:0:6:0,0,0 +chrX 4267691 . A . . END=4267697 GT:DP:GQ:MIN_DP:PL 0/0:9:21:8:0,21,243 +chrX 4267698 . G . . END=4267698 GT:DP:GQ:MIN_DP:PL 0/0:11:8:11:0,8,313 +chrX 4267699 . T . . END=4267700 GT:DP:GQ:MIN_DP:PL 0/0:11:30:11:0,30,327 +chrX 4267701 . T . . END=4267701 GT:DP:GQ:MIN_DP:PL 0/0:11:19:11:0,19,333 +chrX 4267702 . A . . END=4267776 GT:DP:GQ:MIN_DP:PL 0/0:15:31:13:0,31,362 +chrX 4267777 . T TATAATATATAGTATATTATAATAATATAGC, 299.60 . AS_QUALapprox=|307|0;AS_VarDP=11|13|0;BaseQRankSum=1.005;DP=43;MQRankSum=0.653;QUALapprox=307;RAW_GT_COUNT=0,1,0;RAW_MQandDP=100993,43;ReadPosRankSum=-2.672;VarDP=24 GT:AD:DP:GQ:PL:SB 0/1:11,13,0:24:99:307,0,282,343,320,663:2,9,8,5 +chrX 4267778 . A . . END=4268497 GT:DP:GQ:MIN_DP:PL 0/0:47:61:47:0,61,963 +chrX 4268498 . A T,AT, 447.64 . AS_QUALapprox=|455|0|0;AS_VarDP=21|18|2|0;BaseQRankSum=-0.789;DP=43;MQRankSum=0.000;QUALapprox=455;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154800,43;ReadPosRankSum=0.065;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:21,18,2,0:41:99:455,0,644,491,503,1077,544,637,1081,1181:12,9,10,10 +chrX 4268499 . T . . END=4268623 GT:DP:GQ:MIN_DP:PL 0/0:53:83:53:0,83,1340 +chrX 4268624 . G A, 604.64 . AS_QUALapprox=|612|0;AS_VarDP=25|24|0;BaseQRankSum=0.446;DP=51;MQRankSum=0.000;QUALapprox=612;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-1.071;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:25,24,0:49:99:612,0,642,687,714,1401:12,13,10,14 +chrX 4268625 . C . . END=4270564 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,99,1449 +chrX 4270565 . A G, 825.64 . AS_QUALapprox=|833|0;AS_VarDP=23|30|0;BaseQRankSum=0.477;DP=54;MQRankSum=0.000;QUALapprox=833;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=-0.206;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:23,30,0:53:99:833,0,590,903,680,1583:12,11,14,16 +chrX 4270566 . C . . END=4270615 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 4270616 . A G, 687.64 . AS_QUALapprox=|695|0;AS_VarDP=24|27|0;BaseQRankSum=-0.237;DP=55;MQRankSum=0.000;QUALapprox=695;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-0.935;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:24,27,0:51:99:695,0,629,768,709,1477:11,13,11,16 +chrX 4270617 . T . . END=4271012 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,107,1493 +chrX 4271013 . A AAAT, 742.60 . AS_QUALapprox=|750|0;AS_VarDP=24|20|0;BaseQRankSum=0.396;DP=54;MQRankSum=0.000;QUALapprox=750;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=0.542;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:24,20,0:44:99:750,0,947,822,1007,1829:15,9,6,14 +chrX 4271014 . A . . END=4271469 GT:DP:GQ:MIN_DP:PL 0/0:57:69:57:0,69,1409 +chrX 4271470 . C T, 687.64 . AS_QUALapprox=|695|0;AS_VarDP=19|24|0;BaseQRankSum=1.587;DP=45;MQRankSum=0.000;QUALapprox=695;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=-1.872;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:19,24,0:43:99:695,0,481,752,553,1305:8,11,16,8 +chrX 4271471 . G . . END=4273152 GT:DP:GQ:MIN_DP:PL 0/0:42:32:41:0,32,1156 +chrX 4273153 . TACACAC T,TACACACACACAC, 1460.02 . AS_QUALapprox=|685|844|0;AS_VarDP=0|17|20|0;DP=45;QUALapprox=1477;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162000,45;VarDP=37 GT:AD:DP:GQ:PL:SB 1/2:0,17,20,0:37:99:1477,792,872,692,0,633,1492,865,702,1551:0,0,20,17 +chrX 4273160 . A . . END=4273360 GT:DP:GQ:MIN_DP:PL 0/0:51:97:51:0,97,1288 +chrX 4273361 . A T, 851.64 . AS_QUALapprox=|859|0;AS_VarDP=28|31|0;BaseQRankSum=0.876;DP=61;MQRankSum=0.000;QUALapprox=859;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=0.843;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:28,31,0:59:99:859,0,732,943,825,1768:13,15,19,12 +chrX 4273362 . T . . END=4274067 GT:DP:GQ:MIN_DP:PL 0/0:64:44:64:0,44,619 +chrX 4274068 . C . . END=4274068 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,528 +chrX 4274069 . A . . END=4274168 GT:DP:GQ:MIN_DP:PL 0/0:49:70:49:0,70,1236 +chrX 4274169 . C T, 1861.06 . AS_QUALapprox=|1875|0;AS_VarDP=0|58|0;DP=58;QUALapprox=1875;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=58 GT:AD:DP:GQ:PL:SB 1/1:0,58,0:58:99:1875,173,0,1875,173,1875:0,0,34,24 +chrX 4274170 . A . . END=4274772 GT:DP:GQ:MIN_DP:PL 0/0:59:95:59:0,95,1509 +chrX 4274773 . A T, 598.64 . AS_QUALapprox=|606|0;AS_VarDP=31|22|0;BaseQRankSum=2.943;DP=54;MQRankSum=0.000;QUALapprox=606;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=1.598;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:31,22,0:53:99:606,0,818,699,884,1583:12,19,9,13 +chrX 4274774 . T . . END=4275167 GT:DP:GQ:MIN_DP:PL 0/0:47:53:47:0,53,907 +chrX 4275168 . G A, 778.64 . AS_QUALapprox=|786|0;AS_VarDP=24|30|0;BaseQRankSum=-1.295;DP=57;MQRankSum=0.000;QUALapprox=786;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-0.270;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,30,0:54:99:0|1:4275168_G_A:786,0,887,858,977,1834:4275168:15,9,21,9 +chrX 4275169 . G . . END=4275175 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 4275176 . T C, 546.64 . AS_QUALapprox=|554|0;AS_VarDP=33|22|0;BaseQRankSum=0.422;DP=56;MQRankSum=0.000;QUALapprox=554;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=0.810;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:33,22,0:55:99:1|0:4275168_G_A:554,0,1268,653,1334,1987:4275168:24,9,15,7 +chrX 4275177 . G . . END=4275926 GT:DP:GQ:MIN_DP:PL 0/0:51:74:51:0,74,1082 +chrX 4275927 . C CA, 254.60 . AS_QUALapprox=|262|0;AS_VarDP=16|17|0;BaseQRankSum=-0.925;DP=49;MQRankSum=0.000;QUALapprox=262;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=-1.387;VarDP=33 GT:AD:DP:GQ:PL:SB 0/1:16,17,0:33:99:262,0,271,310,321,632:10,6,10,7 +chrX 4275928 . A . . END=4277711 GT:DP:GQ:MIN_DP:PL 0/0:37:28:33:0,28,366 +chrX 4277712 . T . . END=4277713 GT:DP:GQ:MIN_DP:PL 0/0:29:0:28:0,0,621 +chrX 4277714 . CTTT *,C, 175.60 . AS_QUALapprox=|0|183|0;AS_VarDP=5|0|5|0;BaseQRankSum=-0.674;DP=31;MQRankSum=0.549;QUALapprox=183;RAW_GT_COUNT=0,1,0;RAW_MQandDP=101979,31;ReadPosRankSum=2.881;VarDP=10 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|2:5,0,5,0:10:99:0|1:4277714_CTTT_*:183,237,888,0,197,142,235,662,196,622:4277714:2,3,0,5 +chrX 4277715 . T *,C,TTCC, 30 . AS_QUALapprox=|0|232|333|0;AS_VarDP=0|5|1|1|0;DP=30;QUALapprox=627;RAW_GT_COUNT=0,0,1;RAW_MQandDP=98379,30;VarDP=7 GT:AD:DP:GQ:PL:SB 1/3:0,5,1,1,0:7:19:627,40,79,395,19,680,294,0,495,574,508,59,692,597,794:0,0,0,7 +chrX 4277718 . CTTTCT *,C,CTTCT, 163.60 . AS_QUALapprox=|0|0|171|0;AS_VarDP=5|0|0|5|0;BaseQRankSum=0.674;DP=31;MQRankSum=0.549;QUALapprox=171;RAW_GT_COUNT=0,1,0;RAW_MQandDP=101979,31;ReadPosRankSum=2.881;VarDP=10 GT:AD:DP:GQ:PL:SB 0/3:5,0,0,5,0:10:99:171,225,876,208,512,563,0,197,178,245,200,504,479,171,471:2,3,0,5 +chrX 4277719 . T *,C, 73.04 . AS_QUALapprox=|0|487|0;AS_VarDP=0|5|2|0;DP=31;QUALapprox=712;RAW_GT_COUNT=0,0,1;RAW_MQandDP=101979,31;VarDP=7 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 2|1:0,5,2,0:7:83:1|0:4277714_CTTT_*:712,83,119,225,0,500,541,150,399,692:4277714:0,0,0,7 +chrX 4277723 . T *,C, 444.05 . AS_QUALapprox=|0|764|0;AS_VarDP=0|0|10|0;DP=30;QUALapprox=764;RAW_GT_COUNT=0,0,1;RAW_MQandDP=98379,30;VarDP=10 GT:AD:DP:GQ:PL:SB 2/2:0,0,10,0:10:39:764,431,508,52,39,0,615,487,61,637:0,0,0,10 +chrX 4277724 . T . . END=4277726 GT:DP:GQ:MIN_DP:PL 0/0:27:51:27:0,51,765 +chrX 4277727 . T C, 80.18 . AS_QUALapprox=|95|0;AS_VarDP=13|5|0;BaseQRankSum=0.782;DP=29;MQRankSum=0.690;QUALapprox=95;RAW_GT_COUNT=0,1,0;RAW_MQandDP=94779,29;ReadPosRankSum=-0.498;VarDP=18 GT:AD:DP:GQ:PL:SB 0/1:13,5,0:18:95:95,0,404,115,453,716:2,11,0,1 +chrX 4277728 . T . . END=4278158 GT:DP:GQ:MIN_DP:PL 0/0:35:35:33:0,35,837 +chrX 4278159 . G A, 1386.06 . AS_QUALapprox=|1400|0;AS_VarDP=0|42|0;DP=44;QUALapprox=1400;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158400,44;VarDP=42 GT:AD:DP:GQ:PL:SB 1/1:0,42,0:42:99:1400,126,0,1400,126,1400:0,0,25,17 +chrX 4278160 . T . . END=4279158 GT:DP:GQ:MIN_DP:PL 0/0:56:84:56:0,84,1226 +chrX 4279159 . G T, 2108.06 . AS_QUALapprox=|2122|0;AS_VarDP=0|64|0;DP=67;QUALapprox=2122;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=64 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:2122,192,0,2122,192,2122:0,0,28,36 +chrX 4279160 . T . . END=4280143 GT:DP:GQ:MIN_DP:PL 0/0:56:95:56:0,95,1245 +chrX 4280144 . T C, 1837.06 . AS_QUALapprox=|1851|0;AS_VarDP=0|57|0;DP=58;QUALapprox=1851;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1851,171,0,1851,171,1851:0,0,25,32 +chrX 4280145 . C . . END=4280680 GT:DP:GQ:MIN_DP:PL 0/0:57:95:57:0,95,1260 +chrX 4280681 . T C, 1141.06 . AS_QUALapprox=|1155|0;AS_VarDP=0|37|0;DP=38;QUALapprox=1155;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;VarDP=37 GT:AD:DP:GQ:PL:SB 1/1:0,37,0:37:99:1155,109,0,1155,109,1155:0,0,17,20 +chrX 4280682 . G . . END=4281418 GT:DP:GQ:MIN_DP:PL 0/0:49:86:49:0,86,1245 +chrX 4281419 . T C, 809.64 . AS_QUALapprox=|817|0;AS_VarDP=25|30|0;BaseQRankSum=0.700;DP=57;MQRankSum=0.000;QUALapprox=817;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-0.744;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:25,30,0:55:99:817,0,633,893,724,1616:11,14,15,15 +chrX 4281420 . G . . END=4281526 GT:DP:GQ:MIN_DP:PL 0/0:51:83:51:0,83,1260 +chrX 4281527 . A T, 1222.06 . AS_QUALapprox=|1236|0;AS_VarDP=0|37|0;DP=38;QUALapprox=1236;RAW_GT_COUNT=0,0,1;RAW_MQandDP=135409,38;VarDP=37 GT:AD:DP:GQ:PL:SB 1/1:0,37,0:37:99:1236,111,0,1236,111,1236:0,0,19,18 +chrX 4281528 . G . . END=4281546 GT:DP:GQ:MIN_DP:PL 0/0:37:79:37:0,79,1062 +chrX 4281547 . C CTT, 750.03 . AS_QUALapprox=|764|0;AS_VarDP=1|27|0;BaseQRankSum=-0.443;DP=41;MQRankSum=3.880;QUALapprox=764;RAW_GT_COUNT=0,0,1;RAW_MQandDP=144373,41;ReadPosRankSum=1.672;VarDP=28 GT:AD:DP:GQ:PL:SB 1/1:1,27,0:28:53:764,53,0,768,81,796:1,0,12,15 +chrX 4281548 . T . . END=4281564 GT:DP:GQ:MIN_DP:PL 0/0:49:66:49:0,66,990 +chrX 4281565 . C . . END=4281565 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,534 +chrX 4281566 . T . . END=4281566 GT:DP:GQ:MIN_DP:PL 0/0:49:84:49:0,84,1260 +chrX 4281567 . C . . END=4281568 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,821 +chrX 4281569 . T . . END=4281572 GT:DP:GQ:MIN_DP:PL 0/0:48:53:48:0,53,1316 +chrX 4281573 . G . . END=4281574 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,704 +chrX 4281575 . T . . END=4282010 GT:DP:GQ:MIN_DP:PL 0/0:59:68:59:0,68,991 +chrX 4282011 . A T, 1627.06 . AS_QUALapprox=|1641|0;AS_VarDP=0|50|0;DP=53;QUALapprox=1641;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1641,150,0,1641,150,1641:0,0,18,32 +chrX 4282012 . G . . END=4283126 GT:DP:GQ:MIN_DP:PL 0/0:57:90:57:0,90,1389 +chrX 4283127 . A T, 1359.06 . AS_QUALapprox=|1373|0;AS_VarDP=0|43|0;DP=46;QUALapprox=1373;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;VarDP=43 GT:AD:DP:GQ:PL:SB 1/1:0,43,0:43:99:1373,128,0,1373,128,1373:0,0,19,24 +chrX 4283128 . A . . END=4283233 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,99,1330 +chrX 4283234 . C T, 348.64 . AS_QUALapprox=|356|0;AS_VarDP=30|14|0;BaseQRankSum=2.276;DP=47;MQRankSum=0.000;QUALapprox=356;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=-0.050;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:30,14,0:44:99:356,0,776,445,818,1263:15,15,8,6 +chrX 4283235 . G . . END=4285012 GT:DP:GQ:MIN_DP:PL 0/0:55:42:55:0,42,1216 +chrX 4285013 . T G, 793.64 . AS_QUALapprox=|801|0;AS_VarDP=29|31|0;BaseQRankSum=-0.128;DP=61;MQRankSum=0.000;QUALapprox=801;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-1.095;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:29,31,0:60:99:801,0,741,887,834,1721:18,11,12,19 +chrX 4285014 . G . . END=4285134 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 4285135 . G A, 1874.06 . AS_QUALapprox=|1888|0;AS_VarDP=1|57|0;BaseQRankSum=2.758;DP=59;MQRankSum=0.000;QUALapprox=1888;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;ReadPosRankSum=-1.464;VarDP=58 GT:AD:DP:GQ:PL:SB 1/1:1,57,0:58:99:1888,164,0,1890,171,1897:0,1,21,36 +chrX 4285136 . G . . END=4286449 GT:DP:GQ:MIN_DP:PL 0/0:60:60:60:0,60,883 +chrX 4286450 . T A, 1907.06 . AS_QUALapprox=|1921|0;AS_VarDP=0|58|0;DP=60;QUALapprox=1921;RAW_GT_COUNT=0,0,1;RAW_MQandDP=214000,60;VarDP=58 GT:AD:DP:GQ:PL:SB 1/1:0,58,0:58:99:1921,174,0,1921,174,1921:0,0,34,24 +chrX 4286451 . C . . END=4286716 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 4286717 . T C, 670.64 . AS_QUALapprox=|678|0;AS_VarDP=32|28|0;BaseQRankSum=-1.813;DP=61;MQRankSum=0.000;QUALapprox=678;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-0.660;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:32,28,0:60:99:678,0,882,774,966,1740:19,13,17,11 +chrX 4286718 . C . . END=4286938 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,115,1557 +chrX 4286939 . C A, 1743.06 . AS_QUALapprox=|1757|0;AS_VarDP=0|53|0;DP=54;QUALapprox=1757;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1757,159,0,1757,159,1757:0,0,26,27 +chrX 4286940 . C . . END=4287417 GT:DP:GQ:MIN_DP:PL 0/0:50:46:50:0,46,945 +chrX 4287418 . T C, 1060.06 . AS_QUALapprox=|1074|0;AS_VarDP=0|31|0;DP=36;QUALapprox=1074;RAW_GT_COUNT=0,0,1;RAW_MQandDP=124705,36;VarDP=31 GT:AD:DP:GQ:PL:SB 1/1:0,31,0:31:93:1074,93,0,1074,93,1074:0,0,20,11 +chrX 4287419 . G GCACACACA,GCGCGCACACACA, 1022.02 . AS_QUALapprox=|748|423|0;AS_VarDP=0|15|8|0;DP=36;QUALapprox=1039;RAW_GT_COUNT=0,0,1;RAW_MQandDP=124705,36;VarDP=23 GT:AD:DP:GQ:PL:SB 1/2:0,15,8,0:23:99:1039,295,291,616,0,844,999,341,760,1133:0,0,16,7 +chrX 4287420 . C . . END=4287443 GT:DP:GQ:MIN_DP:PL 0/0:45:90:45:0,90,1350 +chrX 4287444 . T . . END=4287444 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,877 +chrX 4287445 . A . . END=4287445 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,106,1393 +chrX 4287446 . T . . END=4287446 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,975 +chrX 4287447 . A . . END=4287447 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,114,1710 +chrX 4287448 . T . . END=4287448 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,1049 +chrX 4287449 . A . . END=4287449 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,111,1665 +chrX 4287450 . T . . END=4287450 GT:DP:GQ:MIN_DP:PL 0/0:44:13:44:0,13,1121 +chrX 4287451 . A . . END=4287531 GT:DP:GQ:MIN_DP:PL 0/0:42:56:42:0,56,1038 +chrX 4287532 . A G, 783.64 . AS_QUALapprox=|791|0;AS_VarDP=12|27|0;BaseQRankSum=-0.232;DP=39;MQRankSum=0.000;QUALapprox=791;RAW_GT_COUNT=0,1,0;RAW_MQandDP=140400,39;ReadPosRankSum=0.625;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:12,27,0:39:99:791,0,290,827,371,1198:7,5,9,18 +chrX 4287533 . T . . END=4287676 GT:DP:GQ:MIN_DP:PL 0/0:44:39:41:0,39,1146 +chrX 4287677 . G T, 1429.06 . AS_QUALapprox=|1443|0;AS_VarDP=0|44|0;DP=45;QUALapprox=1443;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162000,45;VarDP=44 GT:AD:DP:GQ:PL:SB 1/1:0,44,0:44:99:1443,132,0,1443,132,1443:0,0,22,22 +chrX 4287678 . A . . END=4287854 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,104,1429 +chrX 4287855 . A AAGG, 1992.03 . AS_QUALapprox=|2006|0;AS_VarDP=0|45|0;DP=48;QUALapprox=2006;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=45 GT:AD:DP:GQ:PL:SB 1/1:0,45,0:45:99:2006,135,0,2006,135,2006:0,0,23,22 +chrX 4287856 . A . . END=4287895 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,117,1755 +chrX 4287896 . C T, 716.64 . AS_QUALapprox=|724|0;AS_VarDP=19|26|0;BaseQRankSum=-0.722;DP=47;MQRankSum=0.000;QUALapprox=724;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=0.506;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:19,26,0:45:99:724,0,516,781,593,1374:10,9,14,12 +chrX 4287897 . T . . END=4288243 GT:DP:GQ:MIN_DP:PL 0/0:47:94:47:0,94,1255 +chrX 4288244 . C G, 1246.06 . AS_QUALapprox=|1260|0;AS_VarDP=0|40|0;DP=41;QUALapprox=1260;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147600,41;VarDP=40 GT:AD:DP:GQ:PL:SB 1/1:0,40,0:40:99:1260,120,0,1260,120,1260:0,0,22,18 +chrX 4288245 . T . . END=4288424 GT:DP:GQ:MIN_DP:PL 0/0:47:86:47:0,86,1330 +chrX 4288425 . G C, 1618.06 . AS_QUALapprox=|1632|0;AS_VarDP=0|51|0;DP=53;QUALapprox=1632;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1632,153,0,1632,153,1632:0,0,33,18 +chrX 4288426 . T . . END=4289151 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,106,1356 +chrX 4289152 . G A, 862.64 . AS_QUALapprox=|870|0;AS_VarDP=19|30|0;BaseQRankSum=1.916;DP=51;MQRankSum=0.000;QUALapprox=870;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=0.616;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:19,30,0:49:99:870,0,473,927,563,1490:7,12,19,11 +chrX 4289153 . C . . END=4289742 GT:DP:GQ:MIN_DP:PL 0/0:51:79:51:0,79,1134 +chrX 4289743 . C T, 671.64 . AS_QUALapprox=|679|0;AS_VarDP=19|24|0;BaseQRankSum=1.973;DP=45;MQRankSum=0.000;QUALapprox=679;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=-0.183;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:19,24,0:43:99:679,0,482,736,553,1289:10,9,18,6 +chrX 4289744 . T . . END=4289934 GT:DP:GQ:MIN_DP:PL 0/0:46:90:46:0,90,1242 +chrX 4289935 . A AGT, 876.02 . AS_QUALapprox=|890|0;AS_VarDP=4|32|0;BaseQRankSum=0.251;DP=45;MQRankSum=0.000;QUALapprox=890;RAW_GT_COUNT=0,0,1;RAW_MQandDP=159489,45;ReadPosRankSum=0.479;VarDP=36 GT:AD:DP:GQ:PL:SB 1/1:4,32,0:36:29:890,29,0,901,95,967:4,0,15,17 +chrX 4289936 . G . . END=4290337 GT:DP:GQ:MIN_DP:PL 0/0:53:93:53:0,93,1403 +chrX 4290338 . G A, 725.64 . AS_QUALapprox=|733|0;AS_VarDP=21|27|0;BaseQRankSum=0.143;DP=51;MQRankSum=0.000;QUALapprox=733;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=0.177;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:21,27,0:48:99:733,0,536,796,617,1413:11,10,15,12 +chrX 4290339 . G . . END=4290556 GT:DP:GQ:MIN_DP:PL 0/0:48:96:48:0,96,1345 +chrX 4290557 . G A, 1376.06 . AS_QUALapprox=|1390|0;AS_VarDP=0|42|0;DP=45;QUALapprox=1390;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162000,45;VarDP=42 GT:AD:DP:GQ:PL:SB 1/1:0,42,0:42:99:1390,126,0,1390,126,1390:0,0,22,20 +chrX 4290558 . G . . END=4290773 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1539 +chrX 4290774 . G A, 826.64 . AS_QUALapprox=|834|0;AS_VarDP=25|31|0;BaseQRankSum=0.359;DP=59;MQRankSum=0.000;QUALapprox=834;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=0.264;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:25,31,0:56:99:834,0,641,910,734,1643:9,16,14,17 +chrX 4290775 . C . . END=4290859 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 4290860 . C A, 1739.06 . AS_QUALapprox=|1753|0;AS_VarDP=0|53|0;DP=54;QUALapprox=1753;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1753,159,0,1753,159,1753:0,0,23,30 +chrX 4290861 . A . . END=4291175 GT:DP:GQ:MIN_DP:PL 0/0:47:87:47:0,87,1290 +chrX 4291176 . TTATATGTAAC T, 780.60 . AS_QUALapprox=|788|0;AS_VarDP=28|21|0;BaseQRankSum=0.716;DP=52;MQRankSum=0.000;QUALapprox=788;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=1.213;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:28,21,0:49:99:788,0,1090,872,1153,2026:15,13,11,10 +chrX 4291187 . C . . END=4291780 GT:DP:GQ:MIN_DP:PL 0/0:44:56:44:0,56,1157 +chrX 4291781 . T . . END=4291781 GT:DP:GQ:MIN_DP:PL 0/0:49:8:49:0,8,1314 +chrX 4291782 . C . . END=4291782 GT:DP:GQ:MIN_DP:PL 0/0:48:40:48:0,40,1370 +chrX 4291783 . A ATTTTTCTC, 1784.03 . AS_QUALapprox=|1798|0;AS_VarDP=0|40|0;DP=50;QUALapprox=1798;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=40 GT:AD:DP:GQ:PL:SB 1/1:0,40,0:40:99:1798,119,0,1799,120,1800:0,0,18,22 +chrX 4291784 . T . . END=4291792 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,111,1665 +chrX 4291793 . C . . END=4291793 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,1077 +chrX 4291794 . T . . END=4291795 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,120,1800 +chrX 4291796 . C . . END=4291798 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,1081 +chrX 4291799 . C . . END=4291799 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,120,1800 +chrX 4291800 . A . . END=4291801 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,1171 +chrX 4291802 . T . . END=4291803 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,120,1800 +chrX 4291804 . T . . END=4291804 GT:DP:GQ:MIN_DP:PL 0/0:48:5:48:0,5,1320 +chrX 4291805 . T . . END=4292423 GT:DP:GQ:MIN_DP:PL 0/0:46:40:46:0,40,1157 +chrX 4292424 . TACACACAC T,TAC, 1076.02 . AS_QUALapprox=|777|759|0;AS_VarDP=0|13|13|0;DP=38;QUALapprox=1093;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;VarDP=26 GT:AD:DP:GQ:PL:SB 1/2:0,13,13,0:26:99:1093,393,316,411,0,334,969,385,402,911:0,0,12,14 +chrX 4292433 . A . . END=4292669 GT:DP:GQ:MIN_DP:PL 0/0:43:20:38:0,20,1111 +chrX 4292670 . G C, 1340.06 . AS_QUALapprox=|1354|0;AS_VarDP=0|42|0;DP=43;QUALapprox=1354;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154800,43;VarDP=42 GT:AD:DP:GQ:PL:SB 1/1:0,42,0:42:99:1354,125,0,1354,125,1354:0,0,17,25 +chrX 4292671 . C . . END=4292737 GT:DP:GQ:MIN_DP:PL 0/0:37:71:37:0,71,1066 +chrX 4292738 . A T, 513.64 . AS_QUALapprox=|521|0;AS_VarDP=20|21|0;BaseQRankSum=2.377;DP=45;MQRankSum=0.000;QUALapprox=521;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=-0.161;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:20,21,0:41:99:521,0,497,561,544,1103:13,6,8,11 +chrX 4292739 . A . . END=4292857 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,114,1710 +chrX 4292858 . C T, 601.64 . AS_QUALapprox=|609|0;AS_VarDP=21|24|0;BaseQRankSum=-2.441;DP=49;MQRankSum=0.000;QUALapprox=609;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=0.706;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:21,24,0:45:99:609,0,568,672,640,1312:11,10,12,12 +chrX 4292859 . C . . END=4292994 GT:DP:GQ:MIN_DP:PL 0/0:52:20:49:0,20,1340 +chrX 4292995 . C . . END=4292995 GT:DP:GQ:MIN_DP:PL 0/0:49:8:49:0,8,1355 +chrX 4292996 . T . . END=4292998 GT:DP:GQ:MIN_DP:PL 0/0:51:24:51:0,24,1374 +chrX 4292999 . C . . END=4293001 GT:DP:GQ:MIN_DP:PL 0/0:50:0:50:0,0,1280 +chrX 4293002 . T . . END=4293030 GT:DP:GQ:MIN_DP:PL 0/0:46:72:46:0,72,1080 +chrX 4293031 . T TATCAATCA,TATCTATCTATCTATCAATCA,TATCTATCTATCTATCTATCAATCA, 244.60 . AS_QUALapprox=|40|60|252|0;AS_VarDP=25|0|0|6|0;BaseQRankSum=-2.092;DP=46;MQRankSum=0.000;QUALapprox=252;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=1.687;VarDP=31 GT:AD:DP:GQ:PL:SB 0/3:25,0,0,6,0:31:99:252,212,1586,192,1179,1097,0,987,823,939,202,1337,1150,971,1302:11,14,3,3 +chrX 4293032 . A . . END=4293033 GT:DP:GQ:MIN_DP:PL 0/0:41:96:41:0,96,1440 +chrX 4293034 . C CT, 619.60 . AS_QUALapprox=|627|0;AS_VarDP=13|21|0;BaseQRankSum=2.305;DP=44;MQRankSum=0.000;QUALapprox=627;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=1.595;VarDP=34 GT:AD:DP:GQ:PL:SB 0/1:13,21,0:34:99:627,0,270,666,334,1000:8,5,11,10 +chrX 4293035 . A AATCAATCT,ATCTATCTATCAATCAATCT,ATCTATCTATCTATCAATCAATCT, 761.60 . AS_QUALapprox=|40|769|154|0;AS_VarDP=13|0|18|0|0;BaseQRankSum=1.808;DP=44;MQRankSum=0.000;QUALapprox=769;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=1.422;VarDP=31 GT:AD:DP:GQ:PL:SB 0/2:13,0,18,0,0:31:99:769,729,1533,0,480,401,615,1112,329,1070,716,1349,467,1101,1325:8,5,10,8 +chrX 4293036 . A . . END=4293046 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,105,1575 +chrX 4293047 . A . . END=4293050 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,1256 +chrX 4293051 . A . . END=4293053 GT:DP:GQ:MIN_DP:PL 0/0:50:28:49:0,28,1375 +chrX 4293054 . T . . END=4293054 GT:DP:GQ:MIN_DP:PL 0/0:49:18:49:0,18,1405 +chrX 4293055 . A . . END=4293056 GT:DP:GQ:MIN_DP:PL 0/0:49:62:49:0,62,1430 +chrX 4293057 . A . . END=4293057 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,783 +chrX 4293058 . T . . END=4293065 GT:DP:GQ:MIN_DP:PL 0/0:48:60:48:0,60,1410 +chrX 4293066 . C . . END=4293066 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,1276 +chrX 4293067 . T . . END=4293071 GT:DP:GQ:MIN_DP:PL 0/0:49:77:49:0,77,1473 +chrX 4293072 . C . . END=4293072 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,1240 +chrX 4293073 . T . . END=4293151 GT:DP:GQ:MIN_DP:PL 0/0:49:40:49:0,40,1291 +chrX 4293152 . C CATCT, 2050.03 . AS_QUALapprox=|2064|0;AS_VarDP=0|46|0;DP=50;QUALapprox=2064;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:2064,138,0,2064,138,2064:0,0,24,22 +chrX 4293153 . A . . END=4293455 GT:DP:GQ:MIN_DP:PL 0/0:47:34:46:0,34,1290 +chrX 4293456 . A . . END=4293456 GT:DP:GQ:MIN_DP:PL 0/0:47:12:47:0,12,1275 +chrX 4293457 . T . . END=4293457 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,120,1800 +chrX 4293458 . C . . END=4293458 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,1206 +chrX 4293459 . T . . END=4293459 GT:DP:GQ:MIN_DP:PL 0/0:50:31:50:0,31,1390 +chrX 4293460 . C . . END=4293462 GT:DP:GQ:MIN_DP:PL 0/0:50:0:50:0,0,1285 +chrX 4293463 . A . . END=4293463 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 4293464 . A . . END=4293472 GT:DP:GQ:MIN_DP:PL 0/0:53:0:53:0,0,1186 +chrX 4293473 . T . . END=4293475 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 4293476 . T . . END=4293476 GT:DP:GQ:MIN_DP:PL 0/0:59:0:59:0,0,1087 +chrX 4293477 . T . . END=4293486 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 4293487 . C . . END=4293487 GT:DP:GQ:MIN_DP:PL 0/0:54:0:54:0,0,754 +chrX 4293488 . C . . END=4293490 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 4293491 . T TTATCTATCTATCTATCTATC, 1642.03 . AS_QUALapprox=|1656|0;AS_VarDP=0|37|0;DP=53;QUALapprox=1656;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=37 GT:AD:DP:GQ:PL:SB 1/1:0,37,0:37:99:1656,110,0,1658,111,1659:0,0,24,13 +chrX 4293492 . T . . END=4293572 GT:DP:GQ:MIN_DP:PL 0/0:40:83:40:0,83,1101 +chrX 4293573 . GTCTA G,ATCTA, 1187.06 . AS_QUALapprox=|407|739|0;AS_VarDP=0|12|25|0;DP=51;QUALapprox=1204;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=37 GT:AD:DP:GQ:PL:SB 1/2:0,12,25,0:37:99:1204,797,968,465,0,653,1276,939,616,1485:0,0,18,19 +chrX 4293578 . T . . END=4293639 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,99,1340 +chrX 4293640 . C CATCTATCT, 515.60 . AS_QUALapprox=|523|0;AS_VarDP=14|14|0;BaseQRankSum=0.323;DP=45;MQRankSum=0.000;QUALapprox=523;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=-1.265;VarDP=28 GT:AD:DP:GQ:PL:SB 0/1:14,14,0:28:99:523,0,529,566,571,1137:4,10,8,6 +chrX 4293641 . A . . END=4294607 GT:DP:GQ:MIN_DP:PL 0/0:56:41:56:0,41,1125 +chrX 4294608 . A G, 1865.06 . AS_QUALapprox=|1879|0;AS_VarDP=0|59|0;DP=60;QUALapprox=1879;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1879,176,0,1879,176,1879:0,0,31,28 +chrX 4294609 . G . . END=4294913 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,106,1424 +chrX 4294914 . A G, 832.64 . AS_QUALapprox=|840|0;AS_VarDP=37|32|0;BaseQRankSum=0.568;DP=70;MQRankSum=0.000;QUALapprox=840;RAW_GT_COUNT=0,1,0;RAW_MQandDP=252000,70;ReadPosRankSum=-0.771;VarDP=69 GT:AD:DP:GQ:PL:SB 0/1:37,32,0:69:99:840,0,999,951,1095,2046:21,16,16,16 +chrX 4294915 . G . . END=4296150 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,100,1371 +chrX 4296151 . GTAGATAGATAGA G,GTAGA, 1657.02 . AS_QUALapprox=|659|1086|0;AS_VarDP=0|16|25|0;DP=54;QUALapprox=1674;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=41 GT:AD:DP:GQ:PL:SB 1/2:0,16,25,0:41:99:1674,1015,1099,664,0,588,1687,1087,672,1747:0,0,21,20 +chrX 4296164 . T . . END=4296181 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,119,1478 +chrX 4296182 . G . . END=4296182 GT:DP:GQ:MIN_DP:PL 0/0:49:8:49:0,8,1285 +chrX 4296183 . A . . END=4296185 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 4296186 . G . . END=4296186 GT:DP:GQ:MIN_DP:PL 0/0:49:18:49:0,18,1365 +chrX 4296187 . A . . END=4296193 GT:DP:GQ:MIN_DP:PL 0/0:50:88:50:0,88,1494 +chrX 4296194 . A . . END=4296194 GT:DP:GQ:MIN_DP:PL 0/0:50:0:50:0,0,1371 +chrX 4296195 . T . . END=4296634 GT:DP:GQ:MIN_DP:PL 0/0:45:37:43:0,37,1016 +chrX 4296635 . T A, 611.64 . AS_QUALapprox=|619|0;AS_VarDP=16|24|0;BaseQRankSum=-0.606;DP=40;MQRankSum=0.000;QUALapprox=619;RAW_GT_COUNT=0,1,0;RAW_MQandDP=144000,40;ReadPosRankSum=0.926;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:16,24,0:40:99:619,0,396,667,468,1135:8,8,10,14 +chrX 4296636 . G . . END=4296819 GT:DP:GQ:MIN_DP:PL 0/0:41:64:41:0,64,889 +chrX 4296820 . C T, 1314.06 . AS_QUALapprox=|1328|0;AS_VarDP=0|43|0;DP=44;QUALapprox=1328;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158400,44;VarDP=43 GT:AD:DP:GQ:PL:SB 1/1:0,43,0:43:99:1328,129,0,1328,129,1328:0,0,18,25 +chrX 4296821 . T . . END=4297194 GT:DP:GQ:MIN_DP:PL 0/0:48:82:48:0,82,1132 +chrX 4297195 . T A, 547.64 . AS_QUALapprox=|555|0;AS_VarDP=15|20|0;BaseQRankSum=0.272;DP=35;MQRankSum=-0.808;QUALapprox=555;RAW_GT_COUNT=0,1,0;RAW_MQandDP=125209,35;ReadPosRankSum=0.834;VarDP=35 GT:AD:DP:GQ:PL:SB 0/1:15,20,0:35:99:555,0,395,600,455,1055:7,8,8,12 +chrX 4297196 . C . . END=4297544 GT:DP:GQ:MIN_DP:PL 0/0:39:71:39:0,71,1052 +chrX 4297545 . G T, 720.64 . AS_QUALapprox=|728|0;AS_VarDP=30|27|0;BaseQRankSum=1.696;DP=57;MQRankSum=0.000;QUALapprox=728;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=1.303;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:30,27,0:57:99:728,0,740,817,822,1639:15,15,19,8 +chrX 4297546 . G . . END=4297910 GT:DP:GQ:MIN_DP:PL 0/0:59:88:59:0,88,1514 +chrX 4297911 . T C, 1897.06 . AS_QUALapprox=|1911|0;AS_VarDP=0|58|0;DP=61;QUALapprox=1911;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=58 GT:AD:DP:GQ:PL:SB 1/1:0,58,0:58:99:1911,174,0,1911,174,1911:0,0,27,31 +chrX 4297912 . T . . END=4298666 GT:DP:GQ:MIN_DP:PL 0/0:52:83:52:0,83,1300 +chrX 4298667 . C T, 1326.06 . AS_QUALapprox=|1340|0;AS_VarDP=0|40|0;DP=41;QUALapprox=1340;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147600,41;VarDP=40 GT:AD:DP:GQ:PL:SB 1/1:0,40,0:40:99:1340,120,0,1340,120,1340:0,0,16,24 +chrX 4298668 . G . . END=4298992 GT:DP:GQ:MIN_DP:PL 0/0:55:93:55:0,93,1330 +chrX 4298993 . C T, 339.64 . AS_QUALapprox=|347|0;AS_VarDP=26|14|0;BaseQRankSum=1.186;DP=42;MQRankSum=0.000;QUALapprox=347;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151200,42;ReadPosRankSum=-1.746;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:26,14,0:40:99:347,0,689,425,731,1155:16,10,6,8 +chrX 4298994 . G . . END=4299324 GT:DP:GQ:MIN_DP:PL 0/0:47:82:47:0,82,1057 +chrX 4299325 . A AAG, 1576.03 . AS_QUALapprox=|1590|0;AS_VarDP=0|46|0;DP=51;QUALapprox=1590;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1590,138,0,1590,138,1590:0,0,21,25 +chrX 4299326 . A . . END=4299726 GT:DP:GQ:MIN_DP:PL 0/0:49:83:49:0,83,1245 +chrX 4299727 . T C, 1311.06 . AS_QUALapprox=|1325|0;AS_VarDP=0|42|0;DP=45;QUALapprox=1325;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162000,45;VarDP=42 GT:AD:DP:GQ:PL:SB 1/1:0,42,0:42:99:1325,126,0,1325,126,1325:0,0,18,24 +chrX 4299728 . C . . END=4299791 GT:DP:GQ:MIN_DP:PL 0/0:38:84:38:0,84,1118 +chrX 4299792 . GTTGTTT G, 1282.03 . AS_QUALapprox=|1296|0;AS_VarDP=0|29|0;DP=35;QUALapprox=1296;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126000,35;VarDP=29 GT:AD:DP:GQ:PL:SB 1/1:0,29,0:29:88:1296,88,0,1296,88,1296:0,0,13,16 +chrX 4299799 . T . . END=4300312 GT:DP:GQ:MIN_DP:PL 0/0:32:27:31:0,27,893 +chrX 4300313 . T C, 1494.06 . AS_QUALapprox=|1508|0;AS_VarDP=0|46|0;DP=47;QUALapprox=1508;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1508,137,0,1508,137,1508:0,0,27,19 +chrX 4300314 . A . . END=4300810 GT:DP:GQ:MIN_DP:PL 0/0:47:41:47:0,41,853 +chrX 4300811 . C T, 1474.06 . AS_QUALapprox=|1488|0;AS_VarDP=0|44|0;DP=45;QUALapprox=1488;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162000,45;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,44,0:44:99:0|1:4300811_C_T:1488,132,0,1488,132,1488:4300811:0,0,23,21 +chrX 4300812 . T . . END=4300923 GT:DP:GQ:MIN_DP:PL 0/0:43:63:41:0,63,1095 +chrX 4300924 . C T, 685.64 . AS_QUALapprox=|693|0;AS_VarDP=17|25|0;BaseQRankSum=-0.675;DP=42;MQRankSum=0.000;QUALapprox=693;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151200,42;ReadPosRankSum=1.756;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:17,25,0:42:99:693,0,445,744,520,1264:8,9,13,12 +chrX 4300925 . T . . END=4301880 GT:DP:GQ:MIN_DP:PL 0/0:49:64:49:0,64,1081 +chrX 4301881 . G C, 1726.06 . AS_QUALapprox=|1740|0;AS_VarDP=0|54|0;DP=54;QUALapprox=1740;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:1740,161,0,1740,161,1740:0,0,25,29 +chrX 4301882 . T . . END=4301956 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 4301957 . C T, 537.64 . AS_QUALapprox=|545|0;AS_VarDP=27|21|0;BaseQRankSum=-1.179;DP=49;MQRankSum=0.000;QUALapprox=545;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=-0.125;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:27,21,0:48:99:545,0,773,626,836,1462:16,11,8,13 +chrX 4301958 . T . . END=4302047 GT:DP:GQ:MIN_DP:PL 0/0:47:78:47:0,78,1157 +chrX 4302048 . T C, 1311.06 . AS_QUALapprox=|1325|0;AS_VarDP=0|40|0;DP=41;QUALapprox=1325;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147600,41;VarDP=40 GT:AD:DP:GQ:PL:SB 1/1:0,40,0:40:99:1325,120,0,1325,120,1325:0,0,21,19 +chrX 4302049 . T . . END=4302286 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,103,1236 +chrX 4302287 . C G, 1300.06 . AS_QUALapprox=|1314|0;AS_VarDP=0|41|0;DP=42;QUALapprox=1314;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151200,42;VarDP=41 GT:AD:DP:GQ:PL:SB 1/1:0,41,0:41:99:1314,122,0,1314,122,1314:0,0,24,17 +chrX 4302288 . T . . END=4302677 GT:DP:GQ:MIN_DP:PL 0/0:53:97:53:0,97,1430 +chrX 4302678 . A G, 1654.06 . AS_QUALapprox=|1668|0;AS_VarDP=1|50|0;BaseQRankSum=2.902;DP=56;MQRankSum=0.000;QUALapprox=1668;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;ReadPosRankSum=-1.529;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:1,50,0:51:99:1668,143,0,1671,150,1678:0,1,26,24 +chrX 4302679 . C . . END=4303142 GT:DP:GQ:MIN_DP:PL 0/0:55:31:45:0,31,1126 +chrX 4303143 . C G, 1444.06 . AS_QUALapprox=|1458|0;AS_VarDP=0|46|0;DP=46;QUALapprox=1458;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1458,136,0,1458,136,1458:0,0,25,21 +chrX 4303144 . T . . END=4306407 GT:DP:GQ:MIN_DP:PL 0/0:53:76:53:0,76,1092 +chrX 4306408 . T A, 1386.06 . AS_QUALapprox=|1400|0;AS_VarDP=0|42|0;DP=44;QUALapprox=1400;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158400,44;VarDP=42 GT:AD:DP:GQ:PL:SB 1/1:0,42,0:42:99:1400,125,0,1400,125,1400:0,0,16,26 +chrX 4306409 . T . . END=4309685 GT:DP:GQ:MIN_DP:PL 0/0:52:43:52:0,43,874 +chrX 4309686 . T C, 1597.06 . AS_QUALapprox=|1611|0;AS_VarDP=1|53|0;BaseQRankSum=-0.574;DP=56;MQRankSum=0.000;QUALapprox=1611;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;ReadPosRankSum=-0.353;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:1,53,0:54:99:1611,126,0,1614,158,1646:0,1,33,20 +chrX 4309687 . A . . END=4311879 GT:DP:GQ:MIN_DP:PL 0/0:54:75:54:0,75,1271 +chrX 4311880 . A C, 1627.06 . AS_QUALapprox=|1641|0;AS_VarDP=0|53|0;DP=57;QUALapprox=1641;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1641,158,0,1641,158,1641:0,0,25,28 +chrX 4311881 . C . . END=4312590 GT:DP:GQ:MIN_DP:PL 0/0:52:79:52:0,79,1101 +chrX 4312591 . C T, 2158.06 . AS_QUALapprox=|2172|0;AS_VarDP=0|64|0;DP=65;QUALapprox=2172;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=64 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:2172,192,0,2172,192,2172:0,0,35,29 +chrX 4312592 . T . . END=4314241 GT:DP:GQ:MIN_DP:PL 0/0:53:58:53:0,58,1071 +chrX 4314242 . T . . END=4314242 GT:DP:GQ:MIN_DP:PL 0/0:33:5:33:0,5,878 +chrX 4314243 . G . . END=4314291 GT:DP:GQ:MIN_DP:PL 0/0:37:52:37:0,52,993 +chrX 4314292 . CA C,AA, 184.60 . AS_QUALapprox=|192|0|0;AS_VarDP=13|14|3|0;BaseQRankSum=-0.047;DP=43;MQRankSum=2.446;QUALapprox=192;RAW_GT_COUNT=0,1,0;RAW_MQandDP=148681,43;ReadPosRankSum=0.607;VarDP=30 GT:AD:DP:GQ:PL:SB 0/1:13,14,3,0:30:99:192,0,257,220,191,926,290,299,732,770:11,2,7,10 +chrX 4314294 . A . . END=4314459 GT:DP:GQ:MIN_DP:PL 0/0:44:91:44:0,91,1200 +chrX 4314460 . T . . END=4314460 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,836 +chrX 4314461 . G GAA, 1162.03 . AS_QUALapprox=|1176|0;AS_VarDP=0|39|0;DP=53;QUALapprox=1176;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187236,53;VarDP=39 GT:AD:DP:GQ:PL:SB 1/1:0,39,0:39:99:1176,117,0,1176,117,1177:0,0,20,19 +chrX 4314462 . A . . END=4314477 GT:DP:GQ:MIN_DP:PL 0/0:52:93:52:0,93,1395 +chrX 4314478 . C . . END=4314478 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,1072 +chrX 4314479 . A . . END=4314479 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 4314480 . G . . END=4314480 GT:DP:GQ:MIN_DP:PL 0/0:53:0:53:0,0,1445 +chrX 4314481 . A . . END=4314655 GT:DP:GQ:MIN_DP:PL 0/0:47:58:47:0,58,1152 +chrX 4314656 . C . . END=4314656 GT:DP:GQ:MIN_DP:PL 0/0:31:15:31:0,15,750 +chrX 4314657 . A . . END=4314692 GT:DP:GQ:MIN_DP:PL 0/0:38:64:38:0,64,948 +chrX 4314693 . T . . END=4314693 GT:DP:GQ:MIN_DP:PL 0/0:42:18:42:0,18,952 +chrX 4314694 . A . . END=4316624 GT:DP:GQ:MIN_DP:PL 0/0:46:28:34:0,28,899 +chrX 4316625 . CT C, 772.60 . AS_QUALapprox=|780|0;AS_VarDP=25|25|0;BaseQRankSum=-0.306;DP=52;MQRankSum=0.000;QUALapprox=780;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=-0.961;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:25,25,0:50:99:780,0,784,855,860,1715:11,14,13,12 +chrX 4316627 . T . . END=4319882 GT:DP:GQ:MIN_DP:PL 0/0:55:29:47:0,29,1229 +chrX 4319883 . CA C, 1755.03 . AS_QUALapprox=|1769|0;AS_VarDP=0|50|0;DP=52;QUALapprox=1769;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1769,150,0,1769,150,1769:0,0,20,30 +chrX 4319885 . A . . END=4321789 GT:DP:GQ:MIN_DP:PL 0/0:55:71:55:0,71,1126 +chrX 4321790 . A T, 1460.06 . AS_QUALapprox=|1474|0;AS_VarDP=0|45|0;DP=50;QUALapprox=1474;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=45 GT:AD:DP:GQ:PL:SB 1/1:0,45,0:45:99:1474,135,0,1474,135,1474:0,0,19,26 +chrX 4321791 . A . . END=4329119 GT:DP:GQ:MIN_DP:PL 0/0:47:37:46:0,37,1087 +chrX 4329120 . A C, 1459.06 . AS_QUALapprox=|1473|0;AS_VarDP=0|46|0;DP=47;QUALapprox=1473;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1473,138,0,1473,138,1473:0,0,28,18 +chrX 4329121 . T . . END=4332477 GT:DP:GQ:MIN_DP:PL 0/0:53:72:53:0,72,1062 +chrX 4332478 . T G, 626.64 . AS_QUALapprox=|634|0;AS_VarDP=25|23|0;BaseQRankSum=-0.065;DP=48;MQRankSum=0.000;QUALapprox=634;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=0.547;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:25,23,0:48:99:634,0,704,709,774,1483:10,15,11,12 +chrX 4332479 . A . . END=4334423 GT:DP:GQ:MIN_DP:PL 0/0:51:63:51:0,63,1013 +chrX 4334424 . T A, 1929.06 . AS_QUALapprox=|1943|0;AS_VarDP=1|59|0;BaseQRankSum=-0.312;DP=60;MQRankSum=0.000;QUALapprox=1943;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;ReadPosRankSum=-0.491;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:1,59,0:60:99:1943,146,0,1946,177,1977:0,1,26,33 +chrX 4334425 . C . . END=4335582 GT:DP:GQ:MIN_DP:PL 0/0:54:26:40:0,26,928 +chrX 4335583 . A . . END=4335584 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,665 +chrX 4335585 . T . . END=4335589 GT:DP:GQ:MIN_DP:PL 0/0:36:27:32:0,27,933 +chrX 4335590 . T . . END=4335592 GT:DP:GQ:MIN_DP:PL 0/0:32:16:32:0,16,423 +chrX 4335593 . T . . END=4335625 GT:DP:GQ:MIN_DP:PL 0/0:32:36:30:0,36,540 +chrX 4335626 . CTCTA C, 0.02 . AS_QUALapprox=|2|0;AS_VarDP=17|2|0;BaseQRankSum=0.841;DP=33;MQRankSum=0.838;QUALapprox=2;RAW_GT_COUNT=0,1,0;RAW_MQandDP=108554,33;ReadPosRankSum=0.266;VarDP=19 GT:AD:DP:GQ:PL:SB 0/1:17,2,0:19:2:2,0,514,52,520,572:6,11,2,0 +chrX 4335630 . A *,C, 61.04 . AS_QUALapprox=|0|231|0;AS_VarDP=6|2|6|0;BaseQRankSum=0.605;DP=30;MQRankSum=-0.293;QUALapprox=231;RAW_GT_COUNT=0,1,0;RAW_MQandDP=97754,30;ReadPosRankSum=0.065;VarDP=14 GT:AD:DP:GQ:PL:SB 0/2:6,2,6,0:14:41:231,41,237,0,43,278,207,230,232,443:0,6,4,4 +chrX 4335631 . T . . END=4342758 GT:DP:GQ:MIN_DP:PL 0/0:57:46:57:0,46,947 +chrX 4342759 . C . . END=4342759 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,944 +chrX 4342760 . A . . END=4343483 GT:DP:GQ:MIN_DP:PL 0/0:56:77:56:0,77,1291 +chrX 4343484 . G T, 796.64 . AS_QUALapprox=|804|0;AS_VarDP=26|30|0;BaseQRankSum=-0.358;DP=61;MQRankSum=0.000;QUALapprox=804;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-0.353;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:26,30,0:56:99:804,0,685,883,776,1658:7,19,14,16 +chrX 4343485 . C . . END=4343749 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,118,1602 +chrX 4343750 . C T, 1733.06 . AS_QUALapprox=|1747|0;AS_VarDP=0|53|0;DP=53;QUALapprox=1747;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1747,159,0,1747,159,1747:0,0,27,26 +chrX 4343751 . C . . END=4343901 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,106,1544 +chrX 4343902 . T C, 2031.06 . AS_QUALapprox=|2045|0;AS_VarDP=0|62|0;DP=63;QUALapprox=2045;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:0,62,0:62:99:2045,186,0,2045,186,2045:0,0,34,28 +chrX 4343903 . C . . END=4346467 GT:DP:GQ:MIN_DP:PL 0/0:51:59:51:0,59,907 +chrX 4346468 . C G, 580.64 . AS_QUALapprox=|588|0;AS_VarDP=23|21|0;BaseQRankSum=1.657;DP=46;MQRankSum=0.000;QUALapprox=588;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=0.259;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:23,21,0:44:99:588,0,602,656,665,1322:12,11,10,11 +chrX 4346469 . T . . END=4346845 GT:DP:GQ:MIN_DP:PL 0/0:48:95:48:0,95,1370 +chrX 4346846 . C G, 1673.06 . AS_QUALapprox=|1687|0;AS_VarDP=0|52|0;DP=53;QUALapprox=1687;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1687,156,0,1687,156,1687:0,0,36,16 +chrX 4346847 . T . . END=4349935 GT:DP:GQ:MIN_DP:PL 0/0:54:50:54:0,50,977 +chrX 4349936 . A G, 1687.06 . AS_QUALapprox=|1701|0;AS_VarDP=0|51|0;DP=54;QUALapprox=1701;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1701,153,0,1701,153,1701:0,0,24,27 +chrX 4349937 . A . . END=4351880 GT:DP:GQ:MIN_DP:PL 0/0:54:61:54:0,61,864 +chrX 4351881 . C T, 2025.06 . AS_QUALapprox=|2039|0;AS_VarDP=0|61|0;DP=64;QUALapprox=2039;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=61 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:2039,183,0,2039,183,2039:0,0,23,38 +chrX 4351882 . A . . END=4352639 GT:DP:GQ:MIN_DP:PL 0/0:65:79:65:0,79,1400 +chrX 4352640 . C T, 1545.06 . AS_QUALapprox=|1559|0;AS_VarDP=0|46|0;DP=48;QUALapprox=1559;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1559,138,0,1559,138,1559:0,0,26,20 +chrX 4352641 . G . . END=4356125 GT:DP:GQ:MIN_DP:PL 0/0:54:71:54:0,71,1002 +chrX 4356126 . T A, 2011.06 . AS_QUALapprox=|2025|0;AS_VarDP=0|62|0;DP=62;QUALapprox=2025;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:0,62,0:62:99:2025,186,0,2025,186,2025:0,0,32,30 +chrX 4356127 . C . . END=4358275 GT:DP:GQ:MIN_DP:PL 0/0:55:67:55:0,67,964 +chrX 4358276 . T . . END=4358277 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,634 +chrX 4358278 . C CAA,CAAA, 640.02 . AS_QUALapprox=|611|463|0;AS_VarDP=1|10|5|0;BaseQRankSum=1.374;DP=49;MQRankSum=0.000;QUALapprox=657;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162861,49;ReadPosRankSum=-0.653;VarDP=16 GT:AD:DP:GQ:PL:SB 1/2:1,10,5,0:16:46:657,99,46,221,0,194,512,119,245,487:0,1,8,7 +chrX 4358279 . A . . END=4358551 GT:DP:GQ:MIN_DP:PL 0/0:51:37:41:0,37,1079 +chrX 4358552 . A G, 458.64 . AS_QUALapprox=|466|0;AS_VarDP=25|18|0;BaseQRankSum=-2.064;DP=45;MQRankSum=0.000;QUALapprox=466;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=0.332;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:25,18,0:43:99:466,0,738,541,792,1333:10,15,9,9 +chrX 4358553 . T . . END=4359121 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,104,1404 +chrX 4359122 . C T, 2036.06 . AS_QUALapprox=|2050|0;AS_VarDP=0|62|0;DP=64;QUALapprox=2050;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:0,62,0:62:99:2050,186,0,2050,186,2050:0,0,35,27 +chrX 4359123 . A . . END=4359412 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,114,1544 +chrX 4359413 . G A, 1634.06 . AS_QUALapprox=|1648|0;AS_VarDP=0|49|0;DP=52;QUALapprox=1648;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1648,147,0,1648,147,1648:0,0,25,24 +chrX 4359414 . T . . END=4360665 GT:DP:GQ:MIN_DP:PL 0/0:57:98:57:0,98,1345 +chrX 4360666 . A G, 2224.06 . AS_QUALapprox=|2238|0;AS_VarDP=1|71|0;BaseQRankSum=-0.544;DP=75;MQRankSum=0.000;QUALapprox=2238;RAW_GT_COUNT=0,0,1;RAW_MQandDP=270000,75;ReadPosRankSum=-1.516;VarDP=72 GT:AD:DP:GQ:PL:SB 1/1:1,71,0:72:99:2238,181,0,2241,213,2273:1,0,36,35 +chrX 4360667 . T . . END=4361848 GT:DP:GQ:MIN_DP:PL 0/0:59:98:59:0,98,1539 +chrX 4361849 . C T, 2252.06 . AS_QUALapprox=|2266|0;AS_VarDP=0|67|0;DP=68;QUALapprox=2266;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;VarDP=67 GT:AD:DP:GQ:PL:SB 1/1:0,67,0:67:99:2266,202,0,2266,202,2266:0,0,34,33 +chrX 4361850 . T . . END=4367798 GT:DP:GQ:MIN_DP:PL 0/0:56:49:56:0,49,1060 +chrX 4367799 . C A, 1845.06 . AS_QUALapprox=|1859|0;AS_VarDP=0|58|0;DP=58;QUALapprox=1859;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=58 GT:AD:DP:GQ:PL:SB 1/1:0,58,0:58:99:1859,174,0,1859,174,1859:0,0,22,36 +chrX 4367800 . A . . END=4369627 GT:DP:GQ:MIN_DP:PL 0/0:35:33:34:0,33,1003 +chrX 4369628 . T . . END=4369630 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,437 +chrX 4369631 . A . . END=4369658 GT:DP:GQ:MIN_DP:PL 0/0:45:57:45:0,57,855 +chrX 4369659 . G . . END=4369660 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,601 +chrX 4369661 . A . . END=4369678 GT:DP:GQ:MIN_DP:PL 0/0:32:37:32:0,37,843 +chrX 4369679 . C . . END=4369679 GT:DP:GQ:MIN_DP:PL 0/0:30:11:30:0,11,764 +chrX 4369680 . A . . END=4369703 GT:DP:GQ:MIN_DP:PL 0/0:42:59:42:0,59,874 +chrX 4369704 . C . . END=4369704 GT:DP:GQ:MIN_DP:PL 0/0:39:8:39:0,8,1057 +chrX 4369705 . A . . END=4370018 GT:DP:GQ:MIN_DP:PL 0/0:47:65:47:0,65,1031 +chrX 4370019 . A G, 1394.06 . AS_QUALapprox=|1408|0;AS_VarDP=0|43|0;DP=45;QUALapprox=1408;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162000,45;VarDP=43 GT:AD:DP:GQ:PL:SB 1/1:0,43,0:43:99:1408,129,0,1408,129,1408:0,0,22,21 +chrX 4370020 . C . . END=4370746 GT:DP:GQ:MIN_DP:PL 0/0:50:68:50:0,68,1162 +chrX 4370747 . A G, 2217.06 . AS_QUALapprox=|2231|0;AS_VarDP=0|68|0;DP=70;QUALapprox=2231;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;VarDP=68 GT:AD:DP:GQ:PL:SB 1/1:0,68,0:68:99:2231,204,0,2231,204,2231:0,0,40,28 +chrX 4370748 . T . . END=4376358 GT:DP:GQ:MIN_DP:PL 0/0:55:64:55:0,64,1166 +chrX 4376359 . A G, 1246.06 . AS_QUALapprox=|1260|0;AS_VarDP=0|39|0;DP=42;QUALapprox=1260;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151200,42;VarDP=39 GT:AD:DP:GQ:PL:SB 1/1:0,39,0:39:99:1260,117,0,1260,117,1260:0,0,20,19 +chrX 4376360 . C . . END=4376454 GT:DP:GQ:MIN_DP:PL 0/0:50:95:50:0,95,1261 +chrX 4376455 . A G, 1826.06 . AS_QUALapprox=|1840|0;AS_VarDP=0|57|0;DP=57;QUALapprox=1840;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1840,170,0,1840,170,1840:0,0,32,25 +chrX 4376456 . C . . END=4376516 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 4376517 . A G, 1715.06 . AS_QUALapprox=|1729|0;AS_VarDP=0|54|0;DP=56;QUALapprox=1729;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:1729,162,0,1729,162,1729:0,0,30,24 +chrX 4376518 . G . . END=4377693 GT:DP:GQ:MIN_DP:PL 0/0:58:61:58:0,61,1106 +chrX 4377694 . TTAAGA T, 2447.03 . AS_QUALapprox=|2461|0;AS_VarDP=0|55|0;DP=55;QUALapprox=2461;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:2461,166,0,2461,166,2461:0,0,28,27 +chrX 4377700 . A . . END=4380229 GT:DP:GQ:MIN_DP:PL 0/0:56:63:56:0,63,1067 +chrX 4380230 . G T, 1534.06 . AS_QUALapprox=|1548|0;AS_VarDP=1|48|0;BaseQRankSum=2.420;DP=54;MQRankSum=0.000;QUALapprox=1548;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;ReadPosRankSum=-1.662;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:1,48,0:49:99:1548,137,0,1550,144,1557:0,1,24,24 +chrX 4380231 . T . . END=4381039 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,101,1424 +chrX 4381040 . A G, 1949.06 . AS_QUALapprox=|1963|0;AS_VarDP=0|62|0;DP=63;QUALapprox=1963;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:0,62,0:62:99:1963,185,0,1963,185,1963:0,0,34,28 +chrX 4381041 . A . . END=4381477 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,102,1424 +chrX 4381478 . A C, 1808.06 . AS_QUALapprox=|1822|0;AS_VarDP=0|53|0;DP=53;QUALapprox=1822;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1822,159,0,1822,159,1822:0,0,22,31 +chrX 4381479 . T . . END=4381621 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,115,1548 +chrX 4381622 . A G, 1768.06 . AS_QUALapprox=|1782|0;AS_VarDP=0|55|0;DP=59;QUALapprox=1782;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1782,165,0,1782,165,1782:0,0,25,30 +chrX 4381623 . T . . END=4383021 GT:DP:GQ:MIN_DP:PL 0/0:58:90:58:0,90,1384 +chrX 4383022 . CTTTTTTTTTTTT C, 713.02 . AS_QUALapprox=|720|0;AS_VarDP=4|19|0;BaseQRankSum=-1.212;DP=54;MQRankSum=1.328;QUALapprox=720;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190400,54;ReadPosRankSum=0.041;VarDP=23 GT:AD:DP:GQ:PL:SB 0/1:4,19,0:23:0:720,0,0,732,60,792:4,0,5,14 +chrX 4383035 . T . . END=4383043 GT:DP:GQ:MIN_DP:PL 0/0:49:66:49:0,66,990 +chrX 4383044 . T . . END=4383051 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,586 +chrX 4383052 . T . . END=4383867 GT:DP:GQ:MIN_DP:PL 0/0:36:24:34:0,24,938 +chrX 4383868 . C A, 560.64 . AS_QUALapprox=|568|0;AS_VarDP=23|21|0;BaseQRankSum=0.302;DP=46;MQRankSum=0.000;QUALapprox=568;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=-0.423;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:23,21,0:44:99:568,0,602,637,665,1302:10,13,13,8 +chrX 4383869 . A . . END=4387102 GT:DP:GQ:MIN_DP:PL 0/0:58:67:58:0,67,999 +chrX 4387103 . T A, 1911.06 . AS_QUALapprox=|1925|0;AS_VarDP=0|63|0;DP=65;QUALapprox=1925;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=63 GT:AD:DP:GQ:PL:SB 1/1:0,63,0:63:99:1925,188,0,1925,188,1925:0,0,28,35 +chrX 4387104 . A . . END=4387484 GT:DP:GQ:MIN_DP:PL 0/0:56:41:56:0,41,1545 +chrX 4387485 . CA C, 1121.03 . AS_QUALapprox=|1135|0;AS_VarDP=1|44|0;DP=51;MQRankSum=0.000;QUALapprox=1135;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=45 GT:AD:DP:GQ:PL:SB 1/1:1,44,0:45:99:1135,113,0,1138,132,1157:0,1,29,15 +chrX 4387487 . A . . END=4388205 GT:DP:GQ:MIN_DP:PL 0/0:66:67:66:0,67,1706 +chrX 4388206 . G A, 1836.06 . AS_QUALapprox=|1850|0;AS_VarDP=0|59|0;DP=63;QUALapprox=1850;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1850,176,0,1850,176,1850:0,0,32,27 +chrX 4388207 . A . . END=4389715 GT:DP:GQ:MIN_DP:PL 0/0:49:62:49:0,62,1116 +chrX 4389716 . G A, 1239.06 . AS_QUALapprox=|1253|0;AS_VarDP=0|38|0;DP=46;QUALapprox=1253;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;VarDP=38 GT:AD:DP:GQ:PL:SB 1/1:0,38,0:38:99:1253,112,0,1255,114,1257:0,0,18,20 +chrX 4389717 . T . . END=4390489 GT:DP:GQ:MIN_DP:PL 0/0:47:59:47:0,59,968 +chrX 4390490 . T C, 1002.06 . AS_QUALapprox=|1016|0;AS_VarDP=0|32|0;DP=34;QUALapprox=1016;RAW_GT_COUNT=0,0,1;RAW_MQandDP=122400,34;VarDP=32 GT:AD:DP:GQ:PL:SB 1/1:0,32,0:32:96:1016,96,0,1016,96,1016:0,0,14,18 +chrX 4390491 . G . . END=4390819 GT:DP:GQ:MIN_DP:PL 0/0:27:39:23:0,39,569 +chrX 4390820 . TATATAC T, 151.60 . AS_QUALapprox=|159|0;AS_VarDP=8|6|0;BaseQRankSum=0.566;DP=25;MQRankSum=0.152;QUALapprox=159;RAW_GT_COUNT=0,1,0;RAW_MQandDP=88226,25;ReadPosRankSum=1.204;VarDP=14 GT:AD:DP:GQ:PL:SB 0/1:8,6,0:14:99:159,0,224,183,242,426:4,4,0,6 +chrX 4390824 . TAC *,T, 81.01 . AS_QUALapprox=|0|295|0;AS_VarDP=0|6|4|0;DP=25;QUALapprox=504;RAW_GT_COUNT=0,0,1;RAW_MQandDP=88226,25;VarDP=10 GT:AD:DP:GQ:PL:SB 1/2:0,6,4,0:10:91:504,91,221,211,0,209,421,187,242,490:0,0,1,9 +chrX 4390827 . A . . END=4390837 GT:DP:GQ:MIN_DP:PL 0/0:28:24:28:0,24,763 +chrX 4390838 . C . . END=4390841 GT:DP:GQ:MIN_DP:PL 0/0:25:0:25:0,0,540 +chrX 4390842 . C . . END=4392571 GT:DP:GQ:MIN_DP:PL 0/0:33:28:24:0,28,694 +chrX 4392572 . G . . END=4392573 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,814 +chrX 4392574 . C . . END=4392579 GT:DP:GQ:MIN_DP:PL 0/0:27:24:26:0,24,655 +chrX 4392580 . C . . END=4392581 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,0 +chrX 4392582 . C CAA,CAAA, 723.02 . AS_QUALapprox=|639|695|0;AS_VarDP=0|4|7|0;DP=39;QUALapprox=740;RAW_GT_COUNT=0,0,1;RAW_MQandDP=134400,39;VarDP=11 GT:AD:DP:GQ:PL:SB 1/2:0,4,7,0:11:45:740,178,101,121,0,45,526,172,115,459:0,0,3,8 +chrX 4392583 . A . . END=4392605 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,99,1485 +chrX 4392606 . G . . END=4392606 GT:DP:GQ:MIN_DP:PL 0/0:48:5:48:0,5,1320 +chrX 4392607 . A . . END=4393752 GT:DP:GQ:MIN_DP:PL 0/0:53:43:53:0,43,1002 +chrX 4393753 . G T, 1950.06 . AS_QUALapprox=|1964|0;AS_VarDP=0|61|0;DP=61;QUALapprox=1964;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=61 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:1964,183,0,1964,183,1964:0,0,29,32 +chrX 4393754 . T . . END=4396139 GT:DP:GQ:MIN_DP:PL 0/0:60:54:60:0,54,1300 +chrX 4396140 . C CTG, 2653.03 . AS_QUALapprox=|2667|0;AS_VarDP=0|61|0;DP=65;QUALapprox=2667;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=61 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:2667,183,0,2667,184,2667:0,0,21,40 +chrX 4396141 . T . . END=4398507 GT:DP:GQ:MIN_DP:PL 0/0:47:31:35:0,31,635 +chrX 4398508 . A G, 1876.06 . AS_QUALapprox=|1890|0;AS_VarDP=0|61|0;DP=63;QUALapprox=1890;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=61 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:1890,183,0,1890,183,1890:0,0,38,23 +chrX 4398509 . C . . END=4402446 GT:DP:GQ:MIN_DP:PL 0/0:57:86:57:0,86,1197 +chrX 4402447 . G C, 1494.06 . AS_QUALapprox=|1508|0;AS_VarDP=0|48|0;DP=50;QUALapprox=1508;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=48 GT:AD:DP:GQ:PL:SB 1/1:0,48,0:48:99:1508,144,0,1508,144,1508:0,0,25,23 +chrX 4402448 . T . . END=4402602 GT:DP:GQ:MIN_DP:PL 0/0:28:36:27:0,36,540 +chrX 4402603 . A T,ATT, 157.64 . AS_QUALapprox=|165|76|0;AS_VarDP=7|7|4|0;BaseQRankSum=-0.886;DP=31;MQRankSum=-0.827;QUALapprox=165;RAW_GT_COUNT=0,1,0;RAW_MQandDP=94464,31;ReadPosRankSum=1.134;VarDP=18 GT:AD:DP:GQ:PL:SB 0/1:7,7,4,0:18:89:165,0,329,89,96,257,188,346,265,520:0,5,8,3 +chrX 4402604 . T . . END=4402604 GT:DP:GQ:MIN_DP:PL 0/0:30:42:30:0,42,630 +chrX 4402605 . A T, 586.05 . AS_QUALapprox=|669|0;AS_VarDP=1|17|0;BaseQRankSum=0.000;DP=32;MQRankSum=-0.488;QUALapprox=669;RAW_GT_COUNT=0,0,1;RAW_MQandDP=98064,32;ReadPosRankSum=1.737;VarDP=18 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:1,17,0:18:49:0|1:4402605_A_T:669,49,0,642,71,715:4402605:0,1,9,8 +chrX 4402606 . T . . END=4402606 GT:DP:GQ:MIN_DP:PL 0/0:32:48:32:0,48,720 +chrX 4402607 . A T, 655.06 . AS_QUALapprox=|669|0;AS_VarDP=1|17|0;BaseQRankSum=0.000;DP=32;MQRankSum=-0.488;QUALapprox=669;RAW_GT_COUNT=0,0,1;RAW_MQandDP=98064,32;ReadPosRankSum=1.739;VarDP=18 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:1,17,0:18:49:0|1:4402605_A_T:669,49,0,671,51,673:4402605:0,1,9,8 +chrX 4402608 . T . . END=4402608 GT:DP:GQ:MIN_DP:PL 0/0:32:48:32:0,48,720 +chrX 4402609 . A T,ATTTTTT,ATTTTTTTT, 1196.06 . AS_QUALapprox=|1210|355|390|0;AS_VarDP=0|17|0|0|0;DP=32;QUALapprox=1210;RAW_GT_COUNT=0,0,1;RAW_MQandDP=98064,32;VarDP=17 GT:AD:DP:GQ:PL:SB 1/1:0,17,0,0,0:17:68:1210,79,0,855,74,987,820,68,881,953,952,80,999,971,1089:0,0,9,8 +chrX 4402610 . T . . END=4402623 GT:DP:GQ:MIN_DP:PL 0/0:38:54:38:0,54,810 +chrX 4402624 . G . . END=4402630 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,371 +chrX 4402631 . A . . END=4402631 GT:DP:GQ:MIN_DP:PL 0/0:29:62:29:0,62,807 +chrX 4402632 . A . . END=4402633 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,749 +chrX 4402634 . C . . END=4403736 GT:DP:GQ:MIN_DP:PL 0/0:26:36:25:0,36,718 +chrX 4403737 . C T, 2487.06 . AS_QUALapprox=|2501|0;AS_VarDP=0|75|0;DP=77;QUALapprox=2501;RAW_GT_COUNT=0,0,1;RAW_MQandDP=277200,77;VarDP=75 GT:AD:DP:GQ:PL:SB 1/1:0,75,0:75:99:2501,225,0,2501,225,2501:0,0,30,45 +chrX 4403738 . A . . END=4404551 GT:DP:GQ:MIN_DP:PL 0/0:68:78:68:0,78,1410 +chrX 4404552 . T C, 1628.06 . AS_QUALapprox=|1642|0;AS_VarDP=0|49|0;DP=54;QUALapprox=1642;RAW_GT_COUNT=0,0,1;RAW_MQandDP=192400,54;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1642,147,0,1642,147,1642:0,0,23,26 +chrX 4404553 . A . . END=4406491 GT:DP:GQ:MIN_DP:PL 0/0:49:68:49:0,68,1087 +chrX 4406492 . TGATA T, 1270.03 . AS_QUALapprox=|1284|0;AS_VarDP=0|29|0;DP=43;QUALapprox=1284;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154800,43;VarDP=29 GT:AD:DP:GQ:PL:SB 1/1:0,29,0:29:88:1284,88,0,1284,88,1284:0,0,12,17 +chrX 4406497 . G . . END=4406534 GT:DP:GQ:MIN_DP:PL 0/0:50:87:50:0,87,1305 +chrX 4406535 . T . . END=4406535 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,1170 +chrX 4406536 . A . . END=4407121 GT:DP:GQ:MIN_DP:PL 0/0:54:77:54:0,77,1247 +chrX 4407122 . G A, 2002.06 . AS_QUALapprox=|2016|0;AS_VarDP=0|60|0;DP=60;QUALapprox=2016;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:2016,180,0,2016,180,2016:0,0,25,35 +chrX 4407123 . T . . END=4408061 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,104,1429 +chrX 4408062 . C G, 697.64 . AS_QUALapprox=|705|0;AS_VarDP=32|26|0;BaseQRankSum=1.109;DP=59;MQRankSum=0.000;QUALapprox=705;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=0.266;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:32,26,0:58:99:705,0,898,801,976,1777:13,19,14,12 +chrX 4408063 . A . . END=4410242 GT:DP:GQ:MIN_DP:PL 0/0:54:58:54:0,58,1197 +chrX 4410243 . G C, 1661.06 . AS_QUALapprox=|1675|0;AS_VarDP=1|55|0;BaseQRankSum=1.347;DP=57;MQRankSum=0.000;QUALapprox=1675;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;ReadPosRankSum=0.712;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:1,55,0:56:99:1675,143,0,1678,164,1700:0,1,25,30 +chrX 4410244 . T . . END=4411285 GT:DP:GQ:MIN_DP:PL 0/0:54:20:38:0,20,1031 +chrX 4411286 . C T, 1733.06 . AS_QUALapprox=|1747|0;AS_VarDP=0|53|0;DP=55;QUALapprox=1747;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1747,159,0,1747,159,1747:0,0,29,24 +chrX 4411287 . A . . END=4411793 GT:DP:GQ:MIN_DP:PL 0/0:64:84:64:0,84,1260 +chrX 4411794 . G . . END=4411794 GT:DP:GQ:MIN_DP:PL 0/0:54:0:54:0,0,1351 +chrX 4411795 . A ATT, 841.03 . AS_QUALapprox=|855|0;AS_VarDP=0|34|0;DP=59;QUALapprox=855;RAW_GT_COUNT=0,0,1;RAW_MQandDP=206736,59;VarDP=34 GT:AD:DP:GQ:PL:SB 1/1:0,34,0:34:99:855,101,0,856,102,857:0,0,17,17 +chrX 4411796 . T . . END=4411821 GT:DP:GQ:MIN_DP:PL 0/0:55:60:55:0,60,900 +chrX 4411822 . G . . END=4411826 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,194 +chrX 4411827 . T . . END=4412742 GT:DP:GQ:MIN_DP:PL 0/0:55:42:55:0,42,1053 +chrX 4412743 . C G, 255.64 . AS_QUALapprox=|263|0;AS_VarDP=35|13|0;BaseQRankSum=-1.003;DP=48;MQRankSum=0.000;QUALapprox=263;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=1.567;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:35,13,0:48:99:263,0,1018,368,1057,1425:16,19,7,6 +chrX 4412744 . A . . END=4415302 GT:DP:GQ:MIN_DP:PL 0/0:57:85:57:0,85,1340 +chrX 4415303 . CA C, 992.03 . AS_QUALapprox=|1006|0;AS_VarDP=1|40|0;BaseQRankSum=-0.659;DP=57;MQRankSum=0.000;QUALapprox=1006;RAW_GT_COUNT=0,0,1;RAW_MQandDP=202961,57;ReadPosRankSum=-0.888;VarDP=41 GT:AD:DP:GQ:PL:SB 1/1:1,40,0:41:99:1006,99,0,1009,120,1030:0,1,17,23 +chrX 4415305 . A . . END=4416777 GT:DP:GQ:MIN_DP:PL 0/0:53:64:53:0,64,987 +chrX 4416778 . T G, 1513.06 . AS_QUALapprox=|1527|0;AS_VarDP=0|46|0;DP=46;QUALapprox=1527;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1527,138,0,1527,138,1527:0,0,16,30 +chrX 4416779 . T . . END=4420124 GT:DP:GQ:MIN_DP:PL 0/0:53:50:53:0,50,1195 +chrX 4420125 . A G, 1281.06 . AS_QUALapprox=|1295|0;AS_VarDP=0|41|0;DP=43;QUALapprox=1295;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154800,43;VarDP=41 GT:AD:DP:GQ:PL:SB 1/1:0,41,0:41:99:1295,123,0,1295,123,1295:0,0,25,16 +chrX 4420126 . A . . END=4420965 GT:DP:GQ:MIN_DP:PL 0/0:50:74:50:0,74,1226 +chrX 4420966 . A C, 1887.06 . AS_QUALapprox=|1901|0;AS_VarDP=0|56|0;DP=56;QUALapprox=1901;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1901,168,0,1901,168,1901:0,0,28,28 +chrX 4420967 . A . . END=4423417 GT:DP:GQ:MIN_DP:PL 0/0:56:51:56:0,51,904 +chrX 4423418 . G A, 1549.06 . AS_QUALapprox=|1563|0;AS_VarDP=0|49|0;DP=50;QUALapprox=1563;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1563,146,0,1563,146,1563:0,0,25,24 +chrX 4423419 . C . . END=4428654 GT:DP:GQ:MIN_DP:PL 0/0:48:37:47:0,37,1091 +chrX 4428655 . C CTCTTA, 1999.03 . AS_QUALapprox=|2013|0;AS_VarDP=0|45|0;DP=45;QUALapprox=2013;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162000,45;VarDP=45 GT:AD:DP:GQ:PL:SB 1/1:0,45,0:45:99:2013,135,0,2013,135,2013:0,0,22,23 +chrX 4428656 . T . . END=4430000 GT:DP:GQ:MIN_DP:PL 0/0:55:61:55:0,61,1221 +chrX 4430001 . T C, 1708.06 . AS_QUALapprox=|1722|0;AS_VarDP=0|52|0;DP=54;QUALapprox=1722;RAW_GT_COUNT=0,0,1;RAW_MQandDP=192244,54;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1722,156,0,1722,156,1722:0,0,26,26 +chrX 4430002 . C . . END=4431513 GT:DP:GQ:MIN_DP:PL 0/0:55:74:55:0,74,1112 +chrX 4431514 . G T, 2023.06 . AS_QUALapprox=|2037|0;AS_VarDP=0|62|0;DP=63;QUALapprox=2037;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:0,62,0:62:99:2037,186,0,2037,186,2037:0,0,36,26 +chrX 4431515 . A . . END=4433570 GT:DP:GQ:MIN_DP:PL 0/0:55:69:55:0,69,1315 +chrX 4433571 . G A, 1961.06 . AS_QUALapprox=|1975|0;AS_VarDP=0|61|0;DP=63;QUALapprox=1975;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=61 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:1975,183,0,1975,183,1975:0,0,25,36 +chrX 4433572 . T . . END=4435169 GT:DP:GQ:MIN_DP:PL 0/0:52:51:52:0,51,1093 +chrX 4435170 . G GCA, 657.60 . AS_QUALapprox=|665|0;AS_VarDP=18|23|0;BaseQRankSum=0.723;DP=53;MQRankSum=0.000;QUALapprox=665;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=-1.918;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:18,23,0:41:99:665,0,485,719,554,1273:9,9,13,10 +chrX 4435171 . C . . END=4438198 GT:DP:GQ:MIN_DP:PL 0/0:54:59:54:0,59,1082 +chrX 4438199 . AT A, 1547.03 . AS_QUALapprox=|1561|0;AS_VarDP=0|52|0;DP=59;QUALapprox=1561;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1561,156,0,1561,156,1561:0,0,24,28 +chrX 4438201 . T . . END=4442667 GT:DP:GQ:MIN_DP:PL 0/0:35:27:35:0,27,929 +chrX 4442668 . TAC T, 797.03 . AS_QUALapprox=|811|0;AS_VarDP=1|25|0;BaseQRankSum=-0.319;DP=32;MQRankSum=0.000;QUALapprox=811;RAW_GT_COUNT=0,0,1;RAW_MQandDP=115200,32;ReadPosRankSum=0.602;VarDP=26 GT:AD:DP:GQ:PL:SB 1/1:1,25,0:26:68:811,68,0,814,75,821:1,0,8,17 +chrX 4442671 . A . . END=4442891 GT:DP:GQ:MIN_DP:PL 0/0:35:25:30:0,25,844 +chrX 4442892 . C . . END=4442892 GT:DP:GQ:MIN_DP:PL 0/0:37:7:37:0,7,957 +chrX 4442893 . T . . END=4442917 GT:DP:GQ:MIN_DP:PL 0/0:39:66:39:0,66,942 +chrX 4442918 . A . . END=4442918 GT:DP:GQ:MIN_DP:PL 0/0:41:19:41:0,19,1096 +chrX 4442919 . T . . END=4442920 GT:DP:GQ:MIN_DP:PL 0/0:43:22:43:0,22,1110 +chrX 4442921 . C . . END=4442921 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,952 +chrX 4442922 . T . . END=4442931 GT:DP:GQ:MIN_DP:PL 0/0:42:87:42:0,87,1234 +chrX 4442932 . G . . END=4442932 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,863 +chrX 4442933 . T . . END=4442949 GT:DP:GQ:MIN_DP:PL 0/0:44:65:44:0,65,1166 +chrX 4442950 . C . . END=4442950 GT:DP:GQ:MIN_DP:PL 0/0:39:8:39:0,8,997 +chrX 4442951 . T . . END=4442960 GT:DP:GQ:MIN_DP:PL 0/0:47:60:47:0,60,1253 +chrX 4442961 . G . . END=4442961 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,663 +chrX 4442962 . T . . END=4442978 GT:DP:GQ:MIN_DP:PL 0/0:43:30:38:0,30,1032 +chrX 4442979 . C . . END=4442979 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,928 +chrX 4442980 . T . . END=4442982 GT:DP:GQ:MIN_DP:PL 0/0:44:90:44:0,90,1350 +chrX 4442983 . G . . END=4442983 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,588 +chrX 4442984 . T . . END=4442984 GT:DP:GQ:MIN_DP:PL 0/0:43:55:43:0,55,1226 +chrX 4442985 . G . . END=4442988 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,584 +chrX 4442989 . T . . END=4442990 GT:DP:GQ:MIN_DP:PL 0/0:40:57:40:0,57,1125 +chrX 4442991 . C . . END=4442991 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,729 +chrX 4442992 . A . . END=4442996 GT:DP:GQ:MIN_DP:PL 0/0:38:20:37:0,20,1042 +chrX 4442997 . G . . END=4442997 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,716 +chrX 4442998 . T . . END=4442998 GT:DP:GQ:MIN_DP:PL 0/0:38:78:38:0,78,1170 +chrX 4442999 . A . . END=4442999 GT:DP:GQ:MIN_DP:PL 0/0:38:10:38:0,10,1032 +chrX 4443000 . T . . END=4443003 GT:DP:GQ:MIN_DP:PL 0/0:39:44:39:0,44,1081 +chrX 4443004 . T . . END=4443008 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,541 +chrX 4443009 . A . . END=4443015 GT:DP:GQ:MIN_DP:PL 0/0:31:23:31:0,23,827 +chrX 4443016 . C . . END=4443016 GT:DP:GQ:MIN_DP:PL 0/0:24:0:24:0,0,616 +chrX 4443017 . T . . END=4443025 GT:DP:GQ:MIN_DP:PL 0/0:28:30:23:0,30,630 +chrX 4443026 . C . . END=4443026 GT:DP:GQ:MIN_DP:PL 0/0:27:0:27:0,0,0 +chrX 4443027 . A . . END=4443308 GT:DP:GQ:MIN_DP:PL 0/0:35:51:35:0,51,759 +chrX 4443309 . G GTA, 1082.03 . AS_QUALapprox=|1096|0;AS_VarDP=0|28|0;DP=39;QUALapprox=1096;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140400,39;VarDP=28 GT:AD:DP:GQ:PL:SB 1/1:0,28,0:28:84:1096,84,0,1096,84,1096:0,0,14,14 +chrX 4443310 . T . . END=4443675 GT:DP:GQ:MIN_DP:PL 0/0:33:38:29:0,38,809 +chrX 4443676 . G . . END=4443676 GT:DP:GQ:MIN_DP:PL 0/0:32:12:32:0,12,823 +chrX 4443677 . T . . END=4443930 GT:DP:GQ:MIN_DP:PL 0/0:43:49:43:0,49,937 +chrX 4443931 . A G, 1113.06 . AS_QUALapprox=|1127|0;AS_VarDP=0|38|0;DP=40;QUALapprox=1127;RAW_GT_COUNT=0,0,1;RAW_MQandDP=142249,40;VarDP=38 GT:AD:DP:GQ:PL:SB 1/1:0,38,0:38:99:1127,113,0,1127,113,1127:0,0,24,14 +chrX 4443932 . T . . END=4444659 GT:DP:GQ:MIN_DP:PL 0/0:41:33:29:0,33,810 +chrX 4444660 . A G, 1767.06 . AS_QUALapprox=|1781|0;AS_VarDP=0|56|0;DP=56;QUALapprox=1781;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1781,167,0,1781,167,1781:0,0,22,34 +chrX 4444661 . C . . END=4446526 GT:DP:GQ:MIN_DP:PL 0/0:58:83:58:0,83,1162 +chrX 4446527 . G A, 1545.06 . AS_QUALapprox=|1559|0;AS_VarDP=0|46|0;DP=48;QUALapprox=1559;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1559,138,0,1559,138,1559:0,0,24,22 +chrX 4446528 . T . . END=4448050 GT:DP:GQ:MIN_DP:PL 0/0:54:78:54:0,78,1167 +chrX 4448051 . A G, 1450.06 . AS_QUALapprox=|1464|0;AS_VarDP=0|45|0;DP=45;QUALapprox=1464;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162000,45;VarDP=45 GT:AD:DP:GQ:PL:SB 1/1:0,45,0:45:99:1464,135,0,1464,135,1464:0,0,24,21 +chrX 4448052 . T . . END=4448276 GT:DP:GQ:MIN_DP:PL 0/0:58:95:58:0,95,1536 +chrX 4448277 . G T, 703.64 . AS_QUALapprox=|711|0;AS_VarDP=28|28|0;BaseQRankSum=-0.565;DP=57;MQRankSum=0.000;QUALapprox=711;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-0.475;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:28,28,0:56:99:711,0,730,794,814,1608:14,14,12,16 +chrX 4448278 . A . . END=4449046 GT:DP:GQ:MIN_DP:PL 0/0:54:95:54:0,95,1405 +chrX 4449047 . ATT A, 398.60 . AS_QUALapprox=|406|0;AS_VarDP=5|17|0;BaseQRankSum=-1.284;DP=51;MQRankSum=1.022;QUALapprox=406;RAW_GT_COUNT=0,1,0;RAW_MQandDP=174576,51;ReadPosRankSum=0.470;VarDP=22 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:5,17,0:22:43:0|1:4449047_ATT_A:406,0,43,421,94,515:4449047:5,0,4,13 +chrX 4449050 . T . . END=4450141 GT:DP:GQ:MIN_DP:PL 0/0:49:50:48:0,50,1080 +chrX 4450142 . A T, 1459.06 . AS_QUALapprox=|1473|0;AS_VarDP=0|43|0;DP=44;QUALapprox=1473;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158400,44;VarDP=43 GT:AD:DP:GQ:PL:SB 1/1:0,43,0:43:99:1473,129,0,1473,129,1473:0,0,27,16 +chrX 4450143 . T . . END=4451536 GT:DP:GQ:MIN_DP:PL 0/0:55:74:55:0,74,964 +chrX 4451537 . A G, 1146.06 . AS_QUALapprox=|1160|0;AS_VarDP=0|36|0;DP=37;QUALapprox=1160;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133200,37;VarDP=36 GT:AD:DP:GQ:PL:SB 1/1:0,36,0:36:99:1160,108,0,1160,108,1160:0,0,18,18 +chrX 4451538 . G . . END=4451748 GT:DP:GQ:MIN_DP:PL 0/0:44:74:44:0,74,1226 +chrX 4451749 . A G, 2011.06 . AS_QUALapprox=|2025|0;AS_VarDP=0|62|0;DP=65;QUALapprox=2025;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:0,62,0:62:99:2025,186,0,2025,186,2025:0,0,34,28 +chrX 4451750 . T . . END=4452012 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 4452013 . A G, 1915.06 . AS_QUALapprox=|1929|0;AS_VarDP=0|61|0;DP=63;QUALapprox=1929;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=61 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:1929,182,0,1929,182,1929:0,0,35,26 +chrX 4452014 . C . . END=4452354 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,109,1687 +chrX 4452355 . A T, 1454.06 . AS_QUALapprox=|1468|0;AS_VarDP=0|46|0;DP=49;QUALapprox=1468;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1468,137,0,1468,137,1468:0,0,22,24 +chrX 4452356 . C . . END=4452719 GT:DP:GQ:MIN_DP:PL 0/0:54:81:54:0,81,1296 +chrX 4452720 . G A, 2339.06 . AS_QUALapprox=|2353|0;AS_VarDP=0|70|0;DP=72;QUALapprox=2353;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;VarDP=70 GT:AD:DP:GQ:PL:SB 1/1:0,70,0:70:99:2353,211,0,2353,211,2353:0,0,37,33 +chrX 4452721 . C . . END=4453905 GT:DP:GQ:MIN_DP:PL 0/0:49:68:49:0,68,1135 +chrX 4453906 . T C, 1673.06 . AS_QUALapprox=|1687|0;AS_VarDP=0|51|0;DP=52;QUALapprox=1687;RAW_GT_COUNT=0,0,1;RAW_MQandDP=185904,52;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1687,153,0,1687,153,1687:0,0,16,35 +chrX 4453907 . A . . END=4453951 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 4453952 . A G, 695.64 . AS_QUALapprox=|703|0;AS_VarDP=21|27|0;BaseQRankSum=-2.262;DP=50;MQRankSum=0.000;QUALapprox=703;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=2.090;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:21,27,0:48:99:703,0,584,767,665,1431:10,11,11,16 +chrX 4453953 . A . . END=4453954 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,120,1800 +chrX 4453955 . G GA, 1199.03 . AS_QUALapprox=|1213|0;AS_VarDP=0|43|0;DP=50;QUALapprox=1213;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=43 GT:AD:DP:GQ:PL:SB 1/1:0,43,0:43:99:1213,129,0,1213,129,1213:0,0,19,24 +chrX 4453956 . A . . END=4454391 GT:DP:GQ:MIN_DP:PL 0/0:65:40:56:0,40,1410 +chrX 4454392 . C T, 47.64 . AS_QUALapprox=|55|0;AS_VarDP=62|6|0;BaseQRankSum=-2.683;DP=70;MQRankSum=-7.585;QUALapprox=55;RAW_GT_COUNT=0,1,0;RAW_MQandDP=233957,70;ReadPosRankSum=0.926;VarDP=68 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:62,6,0:68:55:0|1:4454392_C_T:55,0,2509,241,2527,2768:4454392:28,34,2,4 +chrX 4454393 . A . . END=4454393 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 4454394 . G C, 47.64 . AS_QUALapprox=|55|0;AS_VarDP=62|6|0;BaseQRankSum=-2.108;DP=72;MQRankSum=-7.585;QUALapprox=55;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241157,72;ReadPosRankSum=0.852;VarDP=68 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:62,6,0:68:55:0|1:4454392_C_T:55,0,2509,241,2527,2768:4454392:28,34,2,4 +chrX 4454395 . C . . END=4454424 GT:DP:GQ:MIN_DP:PL 0/0:63:51:62:0,51,1718 +chrX 4454425 . T . . END=4454425 GT:DP:GQ:MIN_DP:PL 0/0:63:4:63:0,4,2363 +chrX 4454426 . A . . END=4454426 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 4454427 . A . . END=4454427 GT:DP:GQ:MIN_DP:PL 0/0:62:4:62:0,4,2363 +chrX 4454428 . T . . END=4454459 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 4454460 . T . . END=4454460 GT:DP:GQ:MIN_DP:PL 0/0:55:12:55:0,12,1515 +chrX 4454461 . C . . END=4455926 GT:DP:GQ:MIN_DP:PL 0/0:51:44:51:0,44,933 +chrX 4455927 . T . . END=4455929 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,793 +chrX 4455930 . A . . END=4455930 GT:DP:GQ:MIN_DP:PL 0/0:33:64:33:0,64,1058 +chrX 4455931 . C . . END=4455934 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,323 +chrX 4455935 . A . . END=4455935 GT:DP:GQ:MIN_DP:PL 0/0:46:96:46:0,96,1440 +chrX 4455936 . G . . END=4455937 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,272 +chrX 4455938 . T TAAAAAAA, 668.60 . AS_QUALapprox=|676|0;AS_VarDP=5|17|0;BaseQRankSum=0.444;DP=36;MQRankSum=-0.919;QUALapprox=676;RAW_GT_COUNT=0,1,0;RAW_MQandDP=123365,36;ReadPosRankSum=-3.173;VarDP=22 GT:AD:DP:GQ:PL:SB 0/1:5,17,0:22:40:676,0,40,692,92,784:5,0,5,12 +chrX 4455939 . A . . END=4455967 GT:DP:GQ:MIN_DP:PL 0/0:34:54:34:0,54,810 +chrX 4455968 . A . . END=4455974 GT:DP:GQ:MIN_DP:PL 0/0:44:13:44:0,13,1467 +chrX 4455975 . A . . END=4455977 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1440 +chrX 4455978 . T . . END=4455978 GT:DP:GQ:MIN_DP:PL 0/0:42:14:42:0,14,1467 +chrX 4455979 . A C, 907.32 . AS_QUALapprox=|919|0;AS_VarDP=6|33|0;BaseQRankSum=3.072;DP=42;MQRankSum=0.842;QUALapprox=919;RAW_GT_COUNT=0,0,1;RAW_MQandDP=142965,42;ReadPosRankSum=0.214;VarDP=39 GT:AD:DP:GQ:PL:SB 1/1:6,33,0:39:6:919,6,0,935,97,1026:6,0,17,16 +chrX 4455980 . A . . END=4455983 GT:DP:GQ:MIN_DP:PL 0/0:41:11:41:0,11,1422 +chrX 4455984 . A . . END=4458393 GT:DP:GQ:MIN_DP:PL 0/0:50:35:48:0,35,1151 +chrX 4458394 . G A, 1370.06 . AS_QUALapprox=|1384|0;AS_VarDP=0|44|0;DP=46;QUALapprox=1384;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;VarDP=44 GT:AD:DP:GQ:PL:SB 1/1:0,44,0:44:99:1384,132,0,1384,132,1384:0,0,23,21 +chrX 4458395 . T . . END=4461912 GT:DP:GQ:MIN_DP:PL 0/0:53:46:53:0,46,900 +chrX 4461913 . GAAGTCATTGTACAAGGAAAACATTCTGTATGCACTAAGATTTCCCAAAAGAT G, 2241.03 . AS_QUALapprox=|2255|0;AS_VarDP=0|50|0;DP=54;QUALapprox=2255;RAW_GT_COUNT=0,0,1;RAW_MQandDP=191905,54;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:2255,153,0,2255,153,2255:0,0,26,24 +chrX 4461966 . A . . END=4461979 GT:DP:GQ:MIN_DP:PL 0/0:52:96:52:0,96,1440 +chrX 4461980 . T . . END=4461983 GT:DP:GQ:MIN_DP:PL 0/0:53:15:53:0,15,225 +chrX 4461984 . T . . END=4461984 GT:DP:GQ:MIN_DP:PL 0/0:54:21:54:0,21,315 +chrX 4461985 . T . . END=4461985 GT:DP:GQ:MIN_DP:PL 0/0:50:0:50:0,0,1350 +chrX 4461986 . A . . END=4461986 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 4461987 . T . . END=4461989 GT:DP:GQ:MIN_DP:PL 0/0:50:0:50:0,0,1291 +chrX 4461990 . G . . END=4461991 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 4461992 . A . . END=4461995 GT:DP:GQ:MIN_DP:PL 0/0:53:0:53:0,0,1414 +chrX 4461996 . T . . END=4461996 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 4461997 . T . . END=4461998 GT:DP:GQ:MIN_DP:PL 0/0:54:0:54:0,0,1459 +chrX 4461999 . A . . END=4461999 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 4462000 . G . . END=4462001 GT:DP:GQ:MIN_DP:PL 0/0:54:0:54:0,0,1435 +chrX 4462002 . A . . END=4462002 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,111,1665 +chrX 4462003 . A . . END=4462003 GT:DP:GQ:MIN_DP:PL 0/0:54:0:54:0,0,1459 +chrX 4462004 . T . . END=4462004 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,111,1665 +chrX 4462005 . A . . END=4462007 GT:DP:GQ:MIN_DP:PL 0/0:53:0:53:0,0,1410 +chrX 4462008 . T . . END=4462009 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,102,1530 +chrX 4462010 . T . . END=4462012 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1340 +chrX 4462013 . G . . END=4462013 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,99,1485 +chrX 4462014 . T . . END=4462016 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1346 +chrX 4462017 . A . . END=4462788 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,119,1633 +chrX 4462789 . AAAAC A, 2124.03 . AS_QUALapprox=|2138|0;AS_VarDP=0|49|0;DP=60;QUALapprox=2138;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:2138,148,0,2138,148,2138:0,0,18,31 +chrX 4462794 . A . . END=4464619 GT:DP:GQ:MIN_DP:PL 0/0:66:37:61:0,37,1215 +chrX 4464620 . G A, 2099.06 . AS_QUALapprox=|2113|0;AS_VarDP=0|64|0;DP=64;QUALapprox=2113;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=64 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:2113,192,0,2113,192,2113:0,0,28,36 +chrX 4464621 . G . . END=4464852 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 4464853 . A C, 1830.06 . AS_QUALapprox=|1844|0;AS_VarDP=0|56|0;DP=57;QUALapprox=1844;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1844,168,0,1844,168,1844:0,0,29,27 +chrX 4464854 . C . . END=4465111 GT:DP:GQ:MIN_DP:PL 0/0:54:84:54:0,84,1415 +chrX 4465112 . G . . END=4465112 GT:DP:GQ:MIN_DP:PL 0/0:57:0:57:0,0,1373 +chrX 4465113 . A . . END=4465123 GT:DP:GQ:MIN_DP:PL 0/0:59:81:59:0,81,1613 +chrX 4465124 . G . . END=4465124 GT:DP:GQ:MIN_DP:PL 0/0:57:0:57:0,0,1215 +chrX 4465125 . A . . END=4465137 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,117,1755 +chrX 4465138 . G . . END=4465138 GT:DP:GQ:MIN_DP:PL 0/0:55:11:55:0,11,1473 +chrX 4465139 . A AAAAG,AAAAGAAAGAAAGAAAG, 1205.02 . AS_QUALapprox=|724|702|0;AS_VarDP=1|15|13|0;BaseQRankSum=0.000;DP=51;MQRankSum=1.291;QUALapprox=1222;RAW_GT_COUNT=0,0,1;RAW_MQandDP=171853,51;ReadPosRankSum=-0.179;VarDP=29 GT:AD:DP:GQ:PL:SB 1/2:1,15,13,0:29:99:1222,524,498,553,0,520,1169,553,577,1180:1,0,19,9 +chrX 4465140 . A . . END=4465189 GT:DP:GQ:MIN_DP:PL 0/0:41:21:39:0,21,1002 +chrX 4465190 . G . . END=4465191 GT:DP:GQ:MIN_DP:PL 0/0:40:6:40:0,6,935 +chrX 4465192 . A . . END=4465192 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,111,1665 +chrX 4465193 . G . . END=4465193 GT:DP:GQ:MIN_DP:PL 0/0:45:16:45:0,16,1205 +chrX 4465194 . A . . END=4465276 GT:DP:GQ:MIN_DP:PL 0/0:44:28:31:0,28,816 +chrX 4465277 . T . . END=4465277 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,853 +chrX 4465278 . G . . END=4465392 GT:DP:GQ:MIN_DP:PL 0/0:42:37:37:0,37,976 +chrX 4465393 . AAAAGAAAG A,AAAAG, 1091.02 . AS_QUALapprox=|773|351|0;AS_VarDP=0|19|8|0;DP=51;QUALapprox=1108;RAW_GT_COUNT=0,0,1;RAW_MQandDP=181765,51;VarDP=27 GT:AD:DP:GQ:PL:SB 1/2:0,19,8,0:27:99:1108,337,335,774,0,757,1115,368,784,1144:0,0,15,12 +chrX 4465402 . A . . END=4465438 GT:DP:GQ:MIN_DP:PL 0/0:47:75:47:0,75,1125 +chrX 4465439 . A . . END=4465439 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,1187 +chrX 4465440 . A . . END=4465448 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,102,1530 +chrX 4465449 . G . . END=4465449 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,1256 +chrX 4465450 . A . . END=4466654 GT:DP:GQ:MIN_DP:PL 0/0:48:75:48:0,75,1052 +chrX 4466655 . A G, 939.06 . AS_QUALapprox=|953|0;AS_VarDP=0|29|0;DP=31;QUALapprox=953;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=29 GT:AD:DP:GQ:PL:SB 1/1:0,29,0:29:87:953,87,0,953,87,953:0,0,15,14 +chrX 4466656 . G . . END=4467927 GT:DP:GQ:MIN_DP:PL 0/0:50:61:50:0,61,948 +chrX 4467928 . G T, 1694.06 . AS_QUALapprox=|1708|0;AS_VarDP=0|51|0;DP=54;QUALapprox=1708;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1708,153,0,1708,153,1708:0,0,28,23 +chrX 4467929 . G . . END=4468134 GT:DP:GQ:MIN_DP:PL 0/0:52:67:52:0,67,1251 +chrX 4468135 . T C, 1172.06 . AS_QUALapprox=|1186|0;AS_VarDP=0|37|0;DP=38;QUALapprox=1186;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;VarDP=37 GT:AD:DP:GQ:PL:SB 1/1:0,37,0:37:99:1186,110,0,1186,110,1186:0,0,15,22 +chrX 4468136 . C . . END=4468702 GT:DP:GQ:MIN_DP:PL 0/0:34:20:30:0,20,843 +chrX 4468703 . G GTA,GTATA, 127.60 . AS_QUALapprox=|135|73|0;AS_VarDP=2|4|2|0;BaseQRankSum=-0.921;DP=27;MQRankSum=0.000;QUALapprox=135;RAW_GT_COUNT=0,1,0;RAW_MQandDP=97200,27;ReadPosRankSum=-0.619;VarDP=8 GT:AD:DP:GQ:PL:SB 0/1:2,4,2,0:8:20:135,0,29,62,20,137,120,53,133,180:2,0,3,3 +chrX 4468704 . T . . END=4468744 GT:DP:GQ:MIN_DP:PL 0/0:34:30:33:0,30,450 +chrX 4468745 . T . . END=4468745 GT:DP:GQ:MIN_DP:PL 0/0:24:12:24:0,12,593 +chrX 4468746 . T . . END=4468746 GT:DP:GQ:MIN_DP:PL 0/0:29:63:29:0,63,945 +chrX 4468747 . C . . END=4468747 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,606 +chrX 4468748 . T . . END=4468751 GT:DP:GQ:MIN_DP:PL 0/0:30:36:30:0,36,824 +chrX 4468752 . G . . END=4468753 GT:DP:GQ:MIN_DP:PL 0/0:28:7:28:0,7,680 +chrX 4468754 . T . . END=4470538 GT:DP:GQ:MIN_DP:PL 0/0:31:31:30:0,31,837 +chrX 4470539 . G T, 1807.06 . AS_QUALapprox=|1821|0;AS_VarDP=0|57|0;DP=57;QUALapprox=1821;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1821,170,0,1821,170,1821:0,0,27,30 +chrX 4470540 . C . . END=4470858 GT:DP:GQ:MIN_DP:PL 0/0:49:67:49:0,67,1072 +chrX 4470859 . T . . END=4470859 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,707 +chrX 4470860 . G . . END=4470864 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,120,1800 +chrX 4470865 . A . . END=4470866 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,562 +chrX 4470867 . G . . END=4470873 GT:DP:GQ:MIN_DP:PL 0/0:45:86:45:0,86,1045 +chrX 4470874 . T . . END=4470874 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,560 +chrX 4470875 . G . . END=4471513 GT:DP:GQ:MIN_DP:PL 0/0:57:40:57:0,40,1038 +chrX 4471514 . C . . END=4471514 GT:DP:GQ:MIN_DP:PL 0/0:42:18:42:0,18,911 +chrX 4471515 . A . . END=4471572 GT:DP:GQ:MIN_DP:PL 0/0:49:42:49:0,42,1047 +chrX 4471573 . A . . END=4471574 GT:DP:GQ:MIN_DP:PL 0/0:57:0:57:0,0,902 +chrX 4471575 . A . . END=4471605 GT:DP:GQ:MIN_DP:PL 0/0:56:98:56:0,98,1567 +chrX 4471606 . A AAGAAAGAAAGAC,AAGAAAGAAAGAAAGAC, 1638.02 . AS_QUALapprox=|955|1300|0;AS_VarDP=0|10|19|0;DP=52;QUALapprox=1655;RAW_GT_COUNT=0,0,1;RAW_MQandDP=178030,52;VarDP=29 GT:AD:DP:GQ:PL:SB 1/2:0,10,19,0:29:99:1655,778,700,446,0,355,1442,774,447,1401:0,0,15,14 +chrX 4471607 . A . . END=4471618 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,114,1533 +chrX 4471619 . G . . END=4471619 GT:DP:GQ:MIN_DP:PL 0/0:52:2:52:0,2,1339 +chrX 4471620 . A . . END=4471620 GT:DP:GQ:MIN_DP:PL 0/0:56:29:56:0,29,1588 +chrX 4471621 . A . . END=4471621 GT:DP:GQ:MIN_DP:PL 0/0:54:0:54:0,0,1330 +chrX 4471622 . A . . END=4471633 GT:DP:GQ:MIN_DP:PL 0/0:53:62:53:0,62,1468 +chrX 4471634 . A . . END=4471635 GT:DP:GQ:MIN_DP:PL 0/0:55:0:55:0,0,961 +chrX 4471636 . G . . END=4473086 GT:DP:GQ:MIN_DP:PL 0/0:54:44:54:0,44,1288 +chrX 4473087 . T C, 1664.06 . AS_QUALapprox=|1678|0;AS_VarDP=1|52|0;BaseQRankSum=-0.368;DP=56;MQRankSum=0.000;QUALapprox=1678;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;ReadPosRankSum=1.374;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:1,52,0:53:99:1678,124,0,1681,156,1712:1,0,29,23 +chrX 4473088 . C . . END=4478222 GT:DP:GQ:MIN_DP:PL 0/0:23:23:21:0,23,651 +chrX 4478223 . A . . END=4478223 GT:DP:GQ:MIN_DP:PL 0/0:21:14:21:0,14,581 +chrX 4478224 . G . . END=4478226 GT:DP:GQ:MIN_DP:PL 0/0:20:25:19:0,25,560 +chrX 4478227 . A . . END=4478227 GT:DP:GQ:MIN_DP:PL 0/0:19:0:19:0,0,481 +chrX 4478228 . G . . END=4478228 GT:DP:GQ:MIN_DP:PL 0/0:19:22:19:0,22,551 +chrX 4478229 . G . . END=4478229 GT:DP:GQ:MIN_DP:PL 0/0:17:16:17:0,16,522 +chrX 4478230 . G . . END=4478237 GT:DP:GQ:MIN_DP:PL 0/0:21:22:19:0,22,505 +chrX 4478238 . A . . END=4478238 GT:DP:GQ:MIN_DP:PL 0/0:21:14:21:0,14,540 +chrX 4478239 . G . . END=4478240 GT:DP:GQ:MIN_DP:PL 0/0:23:37:22:0,37,674 +chrX 4478241 . A . . END=4478241 GT:DP:GQ:MIN_DP:PL 0/0:23:9:23:0,9,600 +chrX 4478242 . G . . END=4478247 GT:DP:GQ:MIN_DP:PL 0/0:24:34:23:0,34,670 +chrX 4478248 . G . . END=4478249 GT:DP:GQ:MIN_DP:PL 0/0:23:0:23:0,0,571 +chrX 4478250 . A . . END=4478252 GT:DP:GQ:MIN_DP:PL 0/0:24:37:24:0,37,724 +chrX 4478253 . A . . END=4478255 GT:DP:GQ:MIN_DP:PL 0/0:26:0:26:0,0,616 +chrX 4478256 . A . . END=4478257 GT:DP:GQ:MIN_DP:PL 0/0:28:32:27:0,32,780 +chrX 4478258 . A AAGG, 340.60 . AS_QUALapprox=|348|0;AS_VarDP=10|10|0;BaseQRankSum=-1.866;DP=23;MQRankSum=0.000;QUALapprox=348;RAW_GT_COUNT=0,1,0;RAW_MQandDP=82800,23;ReadPosRankSum=1.022;VarDP=20 GT:AD:DP:GQ:PL:SB 0/1:10,10,0:20:99:348,0,364,378,394,773:8,2,5,5 +chrX 4478259 . A . . END=4478292 GT:DP:GQ:MIN_DP:PL 0/0:21:38:20:0,38,620 +chrX 4478293 . GGAAA G, 424.02 . AS_QUALapprox=|438|0;AS_VarDP=0|10|0;DP=27;QUALapprox=438;RAW_GT_COUNT=0,0,1;RAW_MQandDP=96100,27;VarDP=10 GT:AD:DP:GQ:PL:SB 1/1:0,10,0:10:31:438,31,0,438,31,438:0,0,8,2 +chrX 4478298 . G . . END=4479297 GT:DP:GQ:MIN_DP:PL 0/0:30:20:22:0,20,495 +chrX 4479298 . C CT, 382.60 . AS_QUALapprox=|390|0;AS_VarDP=20|21|0;BaseQRankSum=-1.532;DP=52;MQRankSum=0.000;QUALapprox=390;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=1.044;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:20,21,0:41:99:390,0,394,450,457,907:14,6,11,10 +chrX 4479299 . T . . END=4479312 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 4479313 . G . . END=4479313 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,1111 +chrX 4479314 . A . . END=4479934 GT:DP:GQ:MIN_DP:PL 0/0:56:46:56:0,46,793 +chrX 4479935 . T . . END=4479936 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,595 +chrX 4479937 . A . . END=4479950 GT:DP:GQ:MIN_DP:PL 0/0:36:81:36:0,81,1215 +chrX 4479951 . G A,GA, 219.60 . AS_QUALapprox=|46|227|0;AS_VarDP=10|3|12|0;BaseQRankSum=-1.688;DP=35;MQRankSum=-0.735;QUALapprox=227;RAW_GT_COUNT=0,1,0;RAW_MQandDP=123241,35;ReadPosRankSum=0.751;VarDP=25 GT:AD:DP:GQ:PL:SB 0/2:10,3,12,0:25:99:227,181,668,0,202,177,261,566,247,598:7,3,5,10 +chrX 4479952 . A . . END=4480921 GT:DP:GQ:MIN_DP:PL 0/0:53:60:53:0,60,1274 +chrX 4480922 . T C, 697.64 . AS_QUALapprox=|705|0;AS_VarDP=22|27|0;BaseQRankSum=-1.077;DP=50;MQRankSum=0.000;QUALapprox=705;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=-1.337;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:22,27,0:49:99:705,0,588,771,668,1439:13,9,14,13 +chrX 4480923 . G . . END=4484102 GT:DP:GQ:MIN_DP:PL 0/0:60:88:60:0,88,1276 +chrX 4484103 . A C, 577.64 . AS_QUALapprox=|585|0;AS_VarDP=20|23|0;BaseQRankSum=-2.471;DP=46;MQRankSum=0.000;QUALapprox=585;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=-0.205;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:20,23,0:43:99:585,0,556,650,637,1437:5,13,6,14 +chrX 4484104 . C . . END=4486402 GT:DP:GQ:MIN_DP:PL 0/0:51:34:50:0,34,1257 +chrX 4486403 . G . . END=4486403 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,721 +chrX 4486404 . T . . END=4486405 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,117,1755 +chrX 4486406 . A . . END=4486406 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,875 +chrX 4486407 . G . . END=4490269 GT:DP:GQ:MIN_DP:PL 0/0:50:21:33:0,21,849 +chrX 4490270 . C T, 613.64 . AS_QUALapprox=|621|0;AS_VarDP=25|23|0;BaseQRankSum=0.737;DP=50;MQRankSum=0.000;QUALapprox=621;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=1.735;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:25,23,0:48:99:621,0,670,696,739,1435:13,12,8,15 +chrX 4490271 . A . . END=4492347 GT:DP:GQ:MIN_DP:PL 0/0:57:59:57:0,59,853 +chrX 4492348 . T C, 377.64 . AS_QUALapprox=|385|0;AS_VarDP=31|16|0;BaseQRankSum=-0.155;DP=49;MQRankSum=0.000;QUALapprox=385;RAW_GT_COUNT=0,1,0;RAW_MQandDP=173761,49;ReadPosRankSum=1.067;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:31,16,0:47:99:385,0,871,478,919,1398:21,10,6,10 +chrX 4492349 . G . . END=4497324 GT:DP:GQ:MIN_DP:PL 0/0:55:61:55:0,61,973 +chrX 4497325 . C T, 876.64 . AS_QUALapprox=|884|0;AS_VarDP=27|33|0;BaseQRankSum=0.158;DP=63;MQRankSum=0.000;QUALapprox=884;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=0.483;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:27,33,0:60:99:884,0,688,965,787,1752:16,11,13,20 +chrX 4497326 . T . . END=4497658 GT:DP:GQ:MIN_DP:PL 0/0:49:56:49:0,56,1123 +chrX 4497659 . C A, 1598.06 . AS_QUALapprox=|1612|0;AS_VarDP=0|45|0;DP=48;QUALapprox=1612;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=45 GT:AD:DP:GQ:PL:SB 1/1:0,45,0:45:99:1612,135,0,1612,135,1612:0,0,27,18 +chrX 4497660 . G . . END=4497681 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,120,1800 +chrX 4497682 . C T, 502.64 . AS_QUALapprox=|510|0;AS_VarDP=27|20|0;BaseQRankSum=2.008;DP=47;MQRankSum=0.000;QUALapprox=510;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=-0.893;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:27,20,0:47:99:510,0,663,590,722,1313:15,12,12,8 +chrX 4497683 . G . . END=4497746 GT:DP:GQ:MIN_DP:PL 0/0:43:94:43:0,94,1325 +chrX 4497747 . AT A, 145.60 . AS_QUALapprox=|153|0;AS_VarDP=18|11|0;BaseQRankSum=-0.057;DP=42;MQRankSum=0.000;QUALapprox=153;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151200,42;ReadPosRankSum=0.337;VarDP=29 GT:AD:DP:GQ:PL:SB 0/1:18,11,0:29:99:153,0,310,207,343,549:8,10,6,5 +chrX 4497749 . T . . END=4500461 GT:DP:GQ:MIN_DP:PL 0/0:42:36:35:0,36,981 +chrX 4500462 . C . . END=4500462 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,928 +chrX 4500463 . A . . END=4500479 GT:DP:GQ:MIN_DP:PL 0/0:38:45:38:0,45,977 +chrX 4500480 . T . . END=4500480 GT:DP:GQ:MIN_DP:PL 0/0:36:19:36:0,19,943 +chrX 4500481 . G . . END=4500481 GT:DP:GQ:MIN_DP:PL 0/0:35:51:35:0,51,947 +chrX 4500482 . C . . END=4500482 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,819 +chrX 4500483 . A . . END=4500485 GT:DP:GQ:MIN_DP:PL 0/0:39:34:36:0,34,963 +chrX 4500486 . C . . END=4500486 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,821 +chrX 4500487 . A . . END=4500487 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 4500488 . C CA,CAA,CAAAA, 258.60 . AS_QUALapprox=|169|150|266|0;AS_VarDP=10|6|0|6|0;BaseQRankSum=-1.555;DP=43;MQRankSum=0.000;QUALapprox=266;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154800,43;ReadPosRankSum=-1.553;VarDP=22 GT:AD:DP:GQ:PL:SB 0/3:10,6,0,6,0:22:54:266,97,213,116,186,349,0,54,247,418,203,256,353,252,421:7,3,5,7 +chrX 4500489 . A . . END=4500510 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 4500511 . G . . END=4500511 GT:DP:GQ:MIN_DP:PL 0/0:55:0:55:0,0,1445 +chrX 4500512 . G . . END=4501065 GT:DP:GQ:MIN_DP:PL 0/0:53:36:52:0,36,1027 +chrX 4501066 . G A, 928.64 . AS_QUALapprox=|936|0;AS_VarDP=24|33|0;BaseQRankSum=1.608;DP=59;MQRankSum=0.000;QUALapprox=936;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=2.474;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:24,33,0:57:99:936,0,593,1008,692,1700:10,14,21,12 +chrX 4501067 . T . . END=4501664 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,104,1420 +chrX 4501665 . A G, 797.64 . AS_QUALapprox=|805|0;AS_VarDP=20|29|0;BaseQRankSum=-0.411;DP=50;MQRankSum=0.000;QUALapprox=805;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=-1.343;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:20,29,0:49:99:805,0,528,865,615,1480:11,9,18,11 +chrX 4501666 . T . . END=4506916 GT:DP:GQ:MIN_DP:PL 0/0:56:50:56:0,50,1130 +chrX 4506917 . CTT C,TTT, 235.60 . AS_QUALapprox=|243|0|0;AS_VarDP=12|10|2|0;BaseQRankSum=-0.234;DP=38;MQRankSum=-0.917;QUALapprox=243;RAW_GT_COUNT=0,1,0;RAW_MQandDP=136009,38;ReadPosRankSum=0.289;VarDP=24 GT:AD:DP:GQ:PL:SB 0/1:12,10,2,0:24:99:243,0,349,311,289,1005,324,402,948,1029:4,8,8,4 +chrX 4506920 . T . . END=4506935 GT:DP:GQ:MIN_DP:PL 0/0:46:38:44:0,38,1250 +chrX 4506936 . G . . END=4506936 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,853 +chrX 4506937 . A . . END=4506937 GT:DP:GQ:MIN_DP:PL 0/0:41:59:41:0,59,1116 +chrX 4506938 . C . . END=4506938 GT:DP:GQ:MIN_DP:PL 0/0:39:4:39:0,4,989 +chrX 4506939 . A . . END=4506940 GT:DP:GQ:MIN_DP:PL 0/0:41:53:41:0,53,1145 +chrX 4506941 . G . . END=4506941 GT:DP:GQ:MIN_DP:PL 0/0:41:14:41:0,14,1067 +chrX 4506942 . G . . END=4508722 GT:DP:GQ:MIN_DP:PL 0/0:58:43:58:0,43,999 +chrX 4508723 . A G, 848.64 . AS_QUALapprox=|856|0;AS_VarDP=15|29|0;BaseQRankSum=1.306;DP=46;MQRankSum=0.000;QUALapprox=856;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=1.487;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:15,29,0:44:99:856,0,359,901,446,1347:10,5,13,16 +chrX 4508724 . A . . END=4508864 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,100,1434 +chrX 4508865 . G A, 653.64 . AS_QUALapprox=|661|0;AS_VarDP=28|26|0;BaseQRankSum=-2.200;DP=56;MQRankSum=0.000;QUALapprox=661;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=1.386;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:28,26,0:54:99:661,0,790,745,868,1613:9,19,16,10 +chrX 4508866 . T . . END=4509340 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,116,1639 +chrX 4509341 . AT A, 1085.03 . AS_QUALapprox=|1099|0;AS_VarDP=2|44|0;BaseQRankSum=-0.449;DP=61;MQRankSum=0.000;QUALapprox=1099;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;ReadPosRankSum=-1.024;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:2,44,0:46:86:1099,86,0,1105,132,1151:1,1,21,23 +chrX 4509343 . T . . END=4510501 GT:DP:GQ:MIN_DP:PL 0/0:53:65:53:0,65,972 +chrX 4510502 . AAT A, 509.60 . AS_QUALapprox=|517|0;AS_VarDP=16|18|0;BaseQRankSum=0.296;DP=41;MQRankSum=-0.884;QUALapprox=517;RAW_GT_COUNT=0,1,0;RAW_MQandDP=146916,41;ReadPosRankSum=1.194;VarDP=34 GT:AD:DP:GQ:PL:SB 0/1:16,18,0:34:99:517,0,419,565,473,1038:6,10,10,8 +chrX 4510505 . A . . END=4513333 GT:DP:GQ:MIN_DP:PL 0/0:53:74:53:0,74,1170 +chrX 4513334 . C . . END=4513334 GT:DP:GQ:MIN_DP:PL 0/0:34:7:34:0,7,872 +chrX 4513335 . A . . END=4513343 GT:DP:GQ:MIN_DP:PL 0/0:40:93:40:0,93,1395 +chrX 4513344 . AAAAAG A, 79.60 . AS_QUALapprox=|87|0;AS_VarDP=16|5|0;BaseQRankSum=-1.629;DP=42;MQRankSum=0.000;QUALapprox=87;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151200,42;ReadPosRankSum=0.785;VarDP=21 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:16,5,0:21:87:0|1:4513344_AAAAAG_A:87,0,590,135,605,740:4513344:5,11,4,1 +chrX 4513350 . A . . END=4514055 GT:DP:GQ:MIN_DP:PL 0/0:41:33:35:0,33,972 +chrX 4514056 . G . . END=4514056 GT:DP:GQ:MIN_DP:PL 0/0:33:5:33:0,5,929 +chrX 4514057 . G . . END=4514064 GT:DP:GQ:MIN_DP:PL 0/0:33:74:33:0,74,1048 +chrX 4514065 . G . . END=4514065 GT:DP:GQ:MIN_DP:PL 0/0:31:9:31:0,9,828 +chrX 4514066 . A . . END=4514072 GT:DP:GQ:MIN_DP:PL 0/0:35:84:35:0,84,1260 +chrX 4514073 . G GAAGA, 506.60 . AS_QUALapprox=|514|0;AS_VarDP=15|14|0;BaseQRankSum=1.719;DP=31;MQRankSum=-0.619;QUALapprox=514;RAW_GT_COUNT=0,1,0;RAW_MQandDP=105398,31;ReadPosRankSum=0.131;VarDP=29 GT:AD:DP:GQ:PL:SB 0/1:15,14,0:29:99:514,0,515,559,557,1116:12,3,11,3 +chrX 4514074 . A . . END=4514092 GT:DP:GQ:MIN_DP:PL 0/0:28:56:28:0,56,859 +chrX 4514093 . G GAAGAAAGAAAGA, 300.60 . AS_QUALapprox=|308|0;AS_VarDP=9|8|0;BaseQRankSum=0.949;DP=31;MQRankSum=-0.722;QUALapprox=308;RAW_GT_COUNT=0,1,0;RAW_MQandDP=105398,31;ReadPosRankSum=-0.564;VarDP=17 GT:AD:DP:GQ:PL:SB 0/1:9,8,0:17:99:308,0,355,336,379,715:7,2,7,1 +chrX 4514094 . A . . END=4514220 GT:DP:GQ:MIN_DP:PL 0/0:29:42:29:0,42,596 +chrX 4514221 . G GAGGA,GAGGAAGGAAGGA, 900.02 . AS_QUALapprox=|656|541|0;AS_VarDP=0|11|7|0;DP=34;QUALapprox=917;RAW_GT_COUNT=0,0,1;RAW_MQandDP=117406,34;VarDP=18 GT:AD:DP:GQ:PL:SB 1/2:0,11,7,0:18:99:917,319,261,409,0,376,822,316,415,804:0,0,13,5 +chrX 4514222 . A . . END=4514256 GT:DP:GQ:MIN_DP:PL 0/0:46:60:46:0,60,1110 +chrX 4514257 . G . . END=4514257 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,1102 +chrX 4514258 . T . . END=4516997 GT:DP:GQ:MIN_DP:PL 0/0:46:20:44:0,20,1102 +chrX 4516998 . GCACA G, 355.60 . AS_QUALapprox=|363|0;AS_VarDP=19|10|0;BaseQRankSum=1.128;DP=39;MQRankSum=0.000;QUALapprox=363;RAW_GT_COUNT=0,1,0;RAW_MQandDP=140400,39;ReadPosRankSum=0.024;VarDP=29 GT:AD:DP:GQ:PL:SB 0/1:19,10,0:29:99:363,0,751,420,781,1202:9,10,4,6 +chrX 4517003 . C . . END=4518008 GT:DP:GQ:MIN_DP:PL 0/0:58:74:58:0,74,1249 +chrX 4518009 . G C, 734.64 . AS_QUALapprox=|742|0;AS_VarDP=27|28|0;BaseQRankSum=-1.165;DP=56;MQRankSum=0.000;QUALapprox=742;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=0.042;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:27,28,0:55:99:742,0,754,823,837,1660:14,13,11,17 +chrX 4518010 . G . . END=4518587 GT:DP:GQ:MIN_DP:PL 0/0:49:87:49:0,87,1237 +chrX 4518588 . G A, 869.64 . AS_QUALapprox=|877|0;AS_VarDP=26|31|0;BaseQRankSum=2.035;DP=60;MQRankSum=0.000;QUALapprox=877;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=0.032;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:26,31,0:57:99:877,0,637,954,731,1685:13,13,17,14 +chrX 4518589 . T . . END=4521355 GT:DP:GQ:MIN_DP:PL 0/0:55:70:55:0,70,1195 +chrX 4521356 . AAGATAGATAGAT A, 584.60 . AS_QUALapprox=|592|0;AS_VarDP=13|15|0;BaseQRankSum=-0.278;DP=43;MQRankSum=0.000;QUALapprox=592;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154800,43;ReadPosRankSum=0.530;VarDP=28 GT:AD:DP:GQ:PL:SB 0/1:13,15,0:28:99:592,0,499,631,546,1177:7,6,8,7 +chrX 4521369 . A . . END=4522090 GT:DP:GQ:MIN_DP:PL 0/0:45:36:40:0,36,1081 +chrX 4522091 . TATAGATAG T,TATAG, 765.02 . AS_QUALapprox=|508|217|0;AS_VarDP=2|19|9|0;BaseQRankSum=0.778;DP=49;MQRankSum=0.000;QUALapprox=782;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176049,49;ReadPosRankSum=-0.166;VarDP=30 GT:AD:DP:GQ:PL:SB 1/2:2,19,9,0:30:99:782,274,353,565,0,712,838,358,673,977:2,0,11,17 +chrX 4522100 . A . . END=4523607 GT:DP:GQ:MIN_DP:PL 0/0:56:59:56:0,59,1197 +chrX 4523608 . AT A,ATT, 475.02 . AS_QUALapprox=|175|342|0;AS_VarDP=8|14|23|0;BaseQRankSum=-0.795;DP=59;MQRankSum=-0.407;QUALapprox=492;RAW_GT_COUNT=0,0,1;RAW_MQandDP=210400,59;ReadPosRankSum=0.134;VarDP=45 GT:AD:DP:GQ:PL:SB 1/2:8,14,23,0:45:99:492,317,586,150,0,320,582,556,348,838:6,2,22,15 +chrX 4523610 . T . . END=4523627 GT:DP:GQ:MIN_DP:PL 0/0:72:99:72:0,120,1800 +chrX 4523628 . G . . END=4523628 GT:DP:GQ:MIN_DP:PL 0/0:68:0:68:0,0,1577 +chrX 4523629 . A . . END=4528447 GT:DP:GQ:MIN_DP:PL 0/0:56:59:56:0,59,1279 +chrX 4528448 . A G, 717.64 . AS_QUALapprox=|725|0;AS_VarDP=19|27|0;BaseQRankSum=-2.157;DP=47;MQRankSum=0.000;QUALapprox=725;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=-1.016;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:19,27,0:46:99:725,0,522,783,603,1386:8,11,12,15 +chrX 4528449 . T . . END=4529078 GT:DP:GQ:MIN_DP:PL 0/0:42:64:42:0,64,1082 +chrX 4529079 . C G, 500.64 . AS_QUALapprox=|508|0;AS_VarDP=22|19|0;BaseQRankSum=-0.553;DP=42;MQRankSum=0.000;QUALapprox=508;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151200,42;ReadPosRankSum=0.353;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:22,19,0:41:99:508,0,606,573,663,1237:16,6,14,5 +chrX 4529080 . T . . END=4531213 GT:DP:GQ:MIN_DP:PL 0/0:49:71:49:0,71,1136 +chrX 4531214 . C A, 644.64 . AS_QUALapprox=|652|0;AS_VarDP=23|24|0;BaseQRankSum=0.795;DP=49;MQRankSum=0.000;QUALapprox=652;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=-0.426;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:23,24,0:47:99:652,0,598,721,670,1391:14,9,13,11 +chrX 4531215 . T . . END=4532767 GT:DP:GQ:MIN_DP:PL 0/0:54:67:54:0,67,1186 +chrX 4532768 . ATT A, 159.60 . AS_QUALapprox=|167|0;AS_VarDP=21|8|0;BaseQRankSum=2.240;DP=45;MQRankSum=0.694;QUALapprox=167;RAW_GT_COUNT=0,1,0;RAW_MQandDP=160000,45;ReadPosRankSum=0.195;VarDP=29 GT:AD:DP:GQ:PL:SB 0/1:21,8,0:29:99:167,0,504,229,529,757:7,14,5,3 +chrX 4532771 . T . . END=4532788 GT:DP:GQ:MIN_DP:PL 0/0:50:96:50:0,96,1440 +chrX 4532789 . G . . END=4532789 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,1017 +chrX 4532790 . C . . END=4533545 GT:DP:GQ:MIN_DP:PL 0/0:53:71:53:0,71,1167 +chrX 4533546 . G . . END=4533546 GT:DP:GQ:MIN_DP:PL 0/0:53:11:53:0,11,1366 +chrX 4533547 . T . . END=4533548 GT:DP:GQ:MIN_DP:PL 0/0:59:45:59:0,45,1587 +chrX 4533549 . T TACACAC, 828.60 . AS_QUALapprox=|836|0;AS_VarDP=16|22|0;BaseQRankSum=-0.566;DP=53;MQRankSum=0.000;QUALapprox=836;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=0.888;VarDP=38 GT:AD:DP:GQ:PL:SB 0/1:16,22,0:38:99:836,0,596,885,663,1548:10,6,13,9 +chrX 4533550 . A . . END=4533582 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,118,1792 +chrX 4533583 . T . . END=4533583 GT:DP:GQ:MIN_DP:PL 0/0:57:3:57:0,3,1443 +chrX 4533584 . A . . END=4534360 GT:DP:GQ:MIN_DP:PL 0/0:56:65:56:0,65,1378 +chrX 4534361 . T TAATA, 1995.03 . AS_QUALapprox=|2009|0;AS_VarDP=0|46|0;DP=49;QUALapprox=2009;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:2009,138,0,2009,138,2009:0,0,23,23 +chrX 4534362 . A . . END=4534630 GT:DP:GQ:MIN_DP:PL 0/0:60:54:60:0,54,1290 +chrX 4534631 . C T, 519.64 . AS_QUALapprox=|527|0;AS_VarDP=28|21|0;BaseQRankSum=-0.330;DP=51;MQRankSum=0.000;QUALapprox=527;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=0.071;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:28,21,0:49:99:527,0,755,610,817,1427:15,13,13,8 +chrX 4534632 . A . . END=4538185 GT:DP:GQ:MIN_DP:PL 0/0:58:64:58:0,64,1261 +chrX 4538186 . C T, 893.64 . AS_QUALapprox=|901|0;AS_VarDP=23|34|0;BaseQRankSum=-1.116;DP=59;MQRankSum=0.000;QUALapprox=901;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-1.058;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:23,34,0:57:99:901,0,573,969,676,1645:10,13,13,21 +chrX 4538187 . G . . END=4540478 GT:DP:GQ:MIN_DP:PL 0/0:61:72:61:0,72,1326 +chrX 4540479 . C T, 546.64 . AS_QUALapprox=|554|0;AS_VarDP=21|21|0;BaseQRankSum=0.102;DP=43;MQRankSum=-0.952;QUALapprox=554;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154681,43;ReadPosRankSum=-1.246;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:21,21,0:42:99:554,0,538,617,601,1218:9,12,11,10 +chrX 4540480 . G . . END=4540843 GT:DP:GQ:MIN_DP:PL 0/0:47:81:47:0,81,1060 +chrX 4540844 . T C, 569.64 . AS_QUALapprox=|577|0;AS_VarDP=20|21|0;BaseQRankSum=0.928;DP=43;MQRankSum=-4.132;QUALapprox=577;RAW_GT_COUNT=0,1,0;RAW_MQandDP=94402,43;ReadPosRankSum=1.057;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:20,21,0:41:99:577,0,507,637,570,1207:11,9,9,12 +chrX 4540845 . A . . END=4541978 GT:DP:GQ:MIN_DP:PL 0/0:47:69:47:0,69,1040 +chrX 4541979 . A C, 957.64 . AS_QUALapprox=|965|0;AS_VarDP=28|25|0;BaseQRankSum=-0.624;DP=53;MQRankSum=-5.547;QUALapprox=965;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158208,53;ReadPosRankSum=0.386;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,25,0:53:99:0|1:4541979_A_C:965,0,1100,1050,1176,2225:4541979:18,10,14,11 +chrX 4541980 . T . . END=4541981 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 4541982 . A G, 954.64 . AS_QUALapprox=|962|0;AS_VarDP=29|25|0;BaseQRankSum=0.139;DP=54;MQRankSum=-5.625;QUALapprox=962;RAW_GT_COUNT=0,1,0;RAW_MQandDP=161808,54;ReadPosRankSum=0.098;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,25,0:54:99:0|1:4541979_A_C:962,0,1131,1050,1206,2256:4541979:18,11,14,11 +chrX 4541983 . G . . END=4541984 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 4541985 . G A, 912.64 . AS_QUALapprox=|920|0;AS_VarDP=29|24|0;BaseQRankSum=-0.448;DP=54;MQRankSum=-5.551;QUALapprox=920;RAW_GT_COUNT=0,1,0;RAW_MQandDP=161927,54;ReadPosRankSum=0.426;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,24,0:53:99:0|1:4541979_A_C:920,0,1134,1008,1206,2214:4541979:18,11,13,11 +chrX 4541986 . C . . END=4542166 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 4542167 . T C, 346.64 . AS_QUALapprox=|354|0;AS_VarDP=30|16|0;BaseQRankSum=-1.319;DP=49;MQRankSum=-5.102;QUALapprox=354;RAW_GT_COUNT=0,1,0;RAW_MQandDP=129116,49;ReadPosRankSum=-0.254;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:30,16,0:46:99:354,0,835,443,883,1326:15,15,7,9 +chrX 4542168 . G . . END=4542554 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,103,1393 +chrX 4542555 . C T, 810.64 . AS_QUALapprox=|818|0;AS_VarDP=25|31|0;BaseQRankSum=-0.381;DP=58;MQRankSum=0.071;QUALapprox=818;RAW_GT_COUNT=0,1,0;RAW_MQandDP=189885,58;ReadPosRankSum=0.866;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,31,0:56:99:0|1:4542555_C_T:818,0,876,894,969,1863:4542555:13,12,13,18 +chrX 4542556 . A . . END=4542564 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 4542565 . G C, 1286.64 . AS_QUALapprox=|1294|0;AS_VarDP=21|34|0;BaseQRankSum=-0.561;DP=58;MQRankSum=-2.184;QUALapprox=1294;RAW_GT_COUNT=0,1,0;RAW_MQandDP=193415,58;ReadPosRankSum=1.038;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,34,0:55:99:0|1:4542555_C_T:1294,0,507,1357,610,1967:4542555:11,10,14,20 +chrX 4542566 . G . . END=4542838 GT:DP:GQ:MIN_DP:PL 0/0:47:28:44:0,28,1231 +chrX 4542839 . T A, 69.64 . AS_QUALapprox=|77|0;AS_VarDP=43|7|0;BaseQRankSum=0.968;DP=50;MQRankSum=-2.703;QUALapprox=77;RAW_GT_COUNT=0,1,0;RAW_MQandDP=88773,50;ReadPosRankSum=0.811;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:43,7,0:50:77:77,0,1286,206,1307,1514:20,23,5,2 +chrX 4542840 . C . . END=4543023 GT:DP:GQ:MIN_DP:PL 0/0:37:52:36:0,52,1261 +chrX 4543024 . C T, 410.64 . AS_QUALapprox=|418|0;AS_VarDP=22|15|0;BaseQRankSum=1.329;DP=37;MQRankSum=-5.158;QUALapprox=418;RAW_GT_COUNT=0,1,0;RAW_MQandDP=76732,37;ReadPosRankSum=-2.091;VarDP=37 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,15,0:37:99:0|1:4543015_A_G:418,0,589,484,634,1118:4543015:15,7,7,8 +chrX 4543025 . G . . END=4543202 GT:DP:GQ:MIN_DP:PL 0/0:51:58:51:0,58,1031 +chrX 4543203 . T C, 1240.64 . AS_QUALapprox=|1248|0;AS_VarDP=24|32|0;BaseQRankSum=-1.278;DP=59;MQRankSum=-6.038;QUALapprox=1248;RAW_GT_COUNT=0,1,0;RAW_MQandDP=155123,59;ReadPosRankSum=-0.414;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,32,0:56:99:0|1:4543203_T_C:1248,0,901,1320,998,2318:4543203:12,12,17,15 +chrX 4543204 . A . . END=4543221 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 4543222 . G A, 1322.64 . AS_QUALapprox=|1330|0;AS_VarDP=29|34|0;BaseQRankSum=-1.006;DP=64;MQRankSum=-6.582;QUALapprox=1330;RAW_GT_COUNT=0,1,0;RAW_MQandDP=168835,64;ReadPosRankSum=0.883;VarDP=63 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,34,0:63:99:0|1:4543203_T_C:1330,0,1115,1417,1218,2635:4543203:15,14,19,15 +chrX 4543223 . G . . END=4543230 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 4543231 . T C, 1206.64 . AS_QUALapprox=|1214|0;AS_VarDP=29|31|0;BaseQRankSum=-0.647;DP=61;MQRankSum=-6.635;QUALapprox=1214;RAW_GT_COUNT=0,1,0;RAW_MQandDP=160001,61;ReadPosRankSum=1.619;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,31,0:60:99:0|1:4543203_T_C:1214,0,1124,1302,1218,2519:4543203:15,14,17,14 +chrX 4543232 . G A, 1167.64 . AS_QUALapprox=|1175|0;AS_VarDP=28|30|0;BaseQRankSum=-0.909;DP=59;MQRankSum=-6.506;QUALapprox=1175;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154192,59;ReadPosRankSum=1.964;VarDP=58 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,30,0:58:99:0|1:4543203_T_C:1175,0,1085,1260,1176,2435:4543203:14,14,17,13 +chrX 4543233 . T . . END=4543342 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,118,1454 +chrX 4543343 . C T, 537.64 . AS_QUALapprox=|545|0;AS_VarDP=26|22|0;BaseQRankSum=-0.639;DP=50;MQRankSum=-3.957;QUALapprox=545;RAW_GT_COUNT=0,1,0;RAW_MQandDP=152080,50;ReadPosRankSum=0.269;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:26,22,0:48:99:545,0,706,623,771,1393:10,16,8,14 +chrX 4543344 . A . . END=4543524 GT:DP:GQ:MIN_DP:PL 0/0:45:84:45:0,84,1162 +chrX 4543525 . T C, 573.64 . AS_QUALapprox=|581|0;AS_VarDP=20|23|0;BaseQRankSum=0.000;DP=47;MQRankSum=-3.273;QUALapprox=581;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154743,47;ReadPosRankSum=-0.938;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:20,23,0:43:99:581,0,492,640,560,1201:9,11,13,10 +chrX 4543526 . A . . END=4543630 GT:DP:GQ:MIN_DP:PL 0/0:48:94:48:0,94,1295 +chrX 4543631 . G T, 616.64 . AS_QUALapprox=|624|0;AS_VarDP=22|23|0;BaseQRankSum=0.459;DP=46;MQRankSum=-2.268;QUALapprox=624;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158032,46;ReadPosRankSum=-1.352;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:22,23,0:45:99:624,0,579,690,649,1339:9,13,9,14 +chrX 4543632 . A . . END=4544069 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,112,1449 +chrX 4544070 . CT C, 581.60 . AS_QUALapprox=|589|0;AS_VarDP=28|27|0;BaseQRankSum=-0.041;DP=67;MQRankSum=-2.050;QUALapprox=589;RAW_GT_COUNT=0,1,0;RAW_MQandDP=232161,67;ReadPosRankSum=-1.692;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:28,27,0:55:99:589,0,587,673,668,1341:12,16,11,16 +chrX 4544072 . T . . END=4544247 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,105,1300 +chrX 4544248 . C T, 473.64 . AS_QUALapprox=|481|0;AS_VarDP=20|18|0;BaseQRankSum=-0.574;DP=42;MQRankSum=-2.415;QUALapprox=481;RAW_GT_COUNT=0,1,0;RAW_MQandDP=97273,42;ReadPosRankSum=-0.600;VarDP=38 GT:AD:DP:GQ:PL:SB 0/1:20,18,0:38:99:481,0,561,541,615,1157:12,8,6,12 +chrX 4544249 . G . . END=4545950 GT:DP:GQ:MIN_DP:PL 0/0:50:67:50:0,67,1011 +chrX 4545951 . C T, 575.64 . AS_QUALapprox=|583|0;AS_VarDP=25|21|0;BaseQRankSum=2.799;DP=48;MQRankSum=-0.593;QUALapprox=583;RAW_GT_COUNT=0,1,0;RAW_MQandDP=122992,48;ReadPosRankSum=0.750;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:25,21,0:46:99:583,0,586,657,649,1306:12,13,12,9 +chrX 4545952 . G . . END=4546819 GT:DP:GQ:MIN_DP:PL 0/0:52:83:52:0,83,1226 +chrX 4546820 . A AG, 842.60 . AS_QUALapprox=|850|0;AS_VarDP=28|26|0;BaseQRankSum=0.396;DP=56;MQRankSum=0.000;QUALapprox=850;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-0.623;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:28,26,0:54:99:850,0,855,934,934,1867:12,16,10,16 +chrX 4546821 . A . . END=4547925 GT:DP:GQ:MIN_DP:PL 0/0:51:65:51:0,65,1097 +chrX 4547926 . C . . END=4547926 GT:DP:GQ:MIN_DP:PL 0/0:38:15:38:0,15,1033 +chrX 4547927 . A . . END=4547947 GT:DP:GQ:MIN_DP:PL 0/0:32:44:31:0,44,769 +chrX 4547948 . C CA, 276.60 . AS_QUALapprox=|284|0;AS_VarDP=11|17|0;BaseQRankSum=-0.778;DP=39;MQRankSum=0.000;QUALapprox=284;RAW_GT_COUNT=0,1,0;RAW_MQandDP=140400,39;ReadPosRankSum=1.553;VarDP=28 GT:AD:DP:GQ:PL:SB 0/1:11,17,0:28:99:284,0,185,317,234,552:7,4,9,8 +chrX 4547949 . A . . END=4550814 GT:DP:GQ:MIN_DP:PL 0/0:57:72:57:0,72,1158 +chrX 4550815 . A G, 710.64 . AS_QUALapprox=|718|0;AS_VarDP=19|26|0;BaseQRankSum=-0.769;DP=48;MQRankSum=0.000;QUALapprox=718;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=0.379;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:19,26,0:45:99:718,0,505,776,583,1359:12,7,13,13 +chrX 4550816 . C . . END=4551314 GT:DP:GQ:MIN_DP:PL 0/0:62:46:62:0,46,1399 +chrX 4551315 . C CTATGTATGTATGTATG, 638.60 . AS_QUALapprox=|646|0;AS_VarDP=22|17|0;BaseQRankSum=-1.351;DP=51;MQRankSum=0.000;QUALapprox=646;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-0.581;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:22,17,0:39:99:646,0,854,714,906,1619:12,10,8,9 +chrX 4551316 . T . . END=4551342 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,102,1530 +chrX 4551343 . C . . END=4551343 GT:DP:GQ:MIN_DP:PL 0/0:54:0:54:0,0,1121 +chrX 4551344 . T . . END=4551346 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 4551347 . C . . END=4551347 GT:DP:GQ:MIN_DP:PL 0/0:54:0:54:0,0,1290 +chrX 4551348 . T . . END=4551350 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 4551351 . C . . END=4551351 GT:DP:GQ:MIN_DP:PL 0/0:54:0:54:0,0,1270 +chrX 4551352 . T . . END=4551354 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 4551355 . C . . END=4551355 GT:DP:GQ:MIN_DP:PL 0/0:56:5:56:0,5,1469 +chrX 4551356 . T . . END=4551638 GT:DP:GQ:MIN_DP:PL 0/0:55:69:55:0,69,1234 +chrX 4551639 . GA G, 88.60 . AS_QUALapprox=|96|0;AS_VarDP=25|8|0;BaseQRankSum=-2.214;DP=51;MQRankSum=0.000;QUALapprox=96;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=0.210;VarDP=33 GT:AD:DP:GQ:PL:SB 0/1:25,8,0:33:96:96,0,561,171,585,756:16,9,3,5 +chrX 4551641 . A . . END=4551756 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,114,1449 +chrX 4551757 . A G, 790.64 . AS_QUALapprox=|798|0;AS_VarDP=28|35|0;BaseQRankSum=-3.238;DP=64;MQRankSum=0.000;QUALapprox=798;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=-1.598;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:28,35,0:63:99:798,0,755,882,858,1740:17,11,16,19 +chrX 4551758 . T . . END=4553133 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,106,1620 +chrX 4553134 . C A, 603.64 . AS_QUALapprox=|611|0;AS_VarDP=30|23|0;BaseQRankSum=0.756;DP=55;MQRankSum=0.000;QUALapprox=611;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-0.700;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:30,23,0:53:99:611,0,794,700,863,1563:12,18,9,14 +chrX 4553135 . T . . END=4553986 GT:DP:GQ:MIN_DP:PL 0/0:52:88:52:0,88,1186 +chrX 4553987 . A G, 792.64 . AS_QUALapprox=|800|0;AS_VarDP=30|29|0;BaseQRankSum=0.365;DP=61;MQRankSum=0.000;QUALapprox=800;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=0.849;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:30,29,0:59:99:800,0,825,890,912,1802:15,15,15,14 +chrX 4553988 . T . . END=4554492 GT:DP:GQ:MIN_DP:PL 0/0:58:85:58:0,85,1522 +chrX 4554493 . G A, 458.64 . AS_QUALapprox=|466|0;AS_VarDP=27|18|0;BaseQRankSum=0.893;DP=47;MQRankSum=0.000;QUALapprox=466;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=-0.533;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:27,18,0:45:99:466,0,764,547,817,1364:11,16,10,8 +chrX 4554494 . T . . END=4555000 GT:DP:GQ:MIN_DP:PL 0/0:44:62:44:0,62,1171 +chrX 4555001 . A T, 611.64 . AS_QUALapprox=|619|0;AS_VarDP=18|24|0;BaseQRankSum=-0.622;DP=47;MQRankSum=0.000;QUALapprox=619;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=-0.598;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:18,24,0:42:99:619,0,456,672,527,1199:9,9,9,15 +chrX 4555002 . T . . END=4555021 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,104,1345 +chrX 4555022 . G GA, 433.60 . AS_QUALapprox=|441|0;AS_VarDP=22|26|0;BaseQRankSum=-1.450;DP=57;MQRankSum=0.000;QUALapprox=441;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-1.087;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:22,26,0:48:99:441,0,398,507,474,981:13,9,10,16 +chrX 4555023 . A . . END=4555037 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 4555038 . G . . END=4555038 GT:DP:GQ:MIN_DP:PL 0/0:61:0:61:0,0,1476 +chrX 4555039 . A . . END=4556082 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,104,1458 +chrX 4556083 . G A, 1533.06 . AS_QUALapprox=|1547|0;AS_VarDP=0|49|0;DP=52;QUALapprox=1547;RAW_GT_COUNT=0,0,1;RAW_MQandDP=185121,52;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1547,147,0,1547,147,1547:0,0,25,24 +chrX 4556084 . C . . END=4556166 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 4556167 . GTTTGTT G, 2041.03 . AS_QUALapprox=|2055|0;AS_VarDP=0|46|0;DP=55;QUALapprox=2055;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:2055,139,0,2055,139,2055:0,0,22,24 +chrX 4556174 . T . . END=4557557 GT:DP:GQ:MIN_DP:PL 0/0:53:50:53:0,50,1202 +chrX 4557558 . A G, 1713.06 . AS_QUALapprox=|1727|0;AS_VarDP=0|52|0;DP=54;QUALapprox=1727;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1727,156,0,1727,156,1727:0,0,30,22 +chrX 4557559 . A . . END=4557711 GT:DP:GQ:MIN_DP:PL 0/0:58:98:58:0,98,1468 +chrX 4557712 . A G, 1420.06 . AS_QUALapprox=|1434|0;AS_VarDP=0|44|0;DP=46;QUALapprox=1434;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;VarDP=44 GT:AD:DP:GQ:PL:SB 1/1:0,44,0:44:99:1434,132,0,1434,132,1434:0,0,17,27 +chrX 4557713 . C . . END=4557779 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 4557780 . T C, 1537.06 . AS_QUALapprox=|1551|0;AS_VarDP=0|48|0;DP=50;QUALapprox=1551;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=48 GT:AD:DP:GQ:PL:SB 1/1:0,48,0:48:99:1551,143,0,1551,143,1551:0,0,24,24 +chrX 4557781 . T . . END=4557887 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 4557888 . G A, 1768.06 . AS_QUALapprox=|1782|0;AS_VarDP=0|53|0;DP=53;QUALapprox=1782;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1782,159,0,1782,159,1782:0,0,29,24 +chrX 4557889 . T . . END=4557928 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,120,1800 +chrX 4557929 . T C, 608.64 . AS_QUALapprox=|616|0;AS_VarDP=23|23|0;BaseQRankSum=0.352;DP=47;MQRankSum=0.000;QUALapprox=616;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=1.209;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:23,23,0:46:99:616,0,622,686,690,1376:12,11,11,12 +chrX 4557930 . A . . END=4558670 GT:DP:GQ:MIN_DP:PL 0/0:51:39:45:0,39,1140 +chrX 4558671 . C G, 1807.06 . AS_QUALapprox=|1821|0;AS_VarDP=0|57|0;DP=59;QUALapprox=1821;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1821,171,0,1821,171,1821:0,0,32,25 +chrX 4558672 . C . . END=4559205 GT:DP:GQ:MIN_DP:PL 0/0:55:98:55:0,98,1420 +chrX 4559206 . T C, 1663.06 . AS_QUALapprox=|1677|0;AS_VarDP=0|52|0;DP=53;QUALapprox=1677;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1677,155,0,1677,155,1677:0,0,27,25 +chrX 4559207 . C . . END=4559274 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 4559275 . C T, 1646.06 . AS_QUALapprox=|1660|0;AS_VarDP=0|52|0;DP=52;QUALapprox=1660;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1660,156,0,1660,156,1660:0,0,30,22 +chrX 4559276 . T . . END=4559371 GT:DP:GQ:MIN_DP:PL 0/0:50:98:50:0,98,1534 +chrX 4559372 . C A, 1410.06 . AS_QUALapprox=|1424|0;AS_VarDP=0|43|0;DP=44;QUALapprox=1424;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158400,44;VarDP=43 GT:AD:DP:GQ:PL:SB 1/1:0,43,0:43:99:1424,128,0,1424,128,1424:0,0,21,22 +chrX 4559373 . A . . END=4560751 GT:DP:GQ:MIN_DP:PL 0/0:52:76:52:0,76,999 +chrX 4560752 . C . . END=4560752 GT:DP:GQ:MIN_DP:PL 0/0:53:18:53:0,18,270 +chrX 4560753 . C . . END=4560755 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 4560756 . A AC, 1930.03 . AS_QUALapprox=|1944|0;AS_VarDP=0|46|0;DP=49;QUALapprox=1944;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,46,0:46:99:0|1:4560756_A_AC:1944,138,0,1944,138,1944:4560756:0,0,22,24 +chrX 4560757 . A AC, 1930.03 . AS_QUALapprox=|1944|0;AS_VarDP=0|46|0;DP=48;QUALapprox=1944;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,46,0:46:99:0|1:4560756_A_AC:1944,138,0,1944,138,1944:4560756:0,0,22,24 +chrX 4560758 . A . . END=4562965 GT:DP:GQ:MIN_DP:PL 0/0:53:75:53:0,75,1300 +chrX 4562966 . T A, 1730.06 . AS_QUALapprox=|1744|0;AS_VarDP=0|53|0;DP=54;QUALapprox=1744;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1744,159,0,1744,159,1744:0,0,26,27 +chrX 4562967 . T . . END=4563562 GT:DP:GQ:MIN_DP:PL 0/0:30:20:28:0,20,765 +chrX 4563563 . T . . END=4563563 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,471 +chrX 4563564 . C CA, 464.03 . AS_QUALapprox=|478|0;AS_VarDP=0|26|0;DP=38;QUALapprox=478;RAW_GT_COUNT=0,0,1;RAW_MQandDP=130800,38;VarDP=26 GT:AD:DP:GQ:PL:SB 1/1:0,26,0:26:75:478,75,0,478,75,478:0,0,10,16 +chrX 4563565 . A . . END=4564394 GT:DP:GQ:MIN_DP:PL 0/0:66:45:66:0,45,1267 +chrX 4564395 . A T, 1871.06 . AS_QUALapprox=|1885|0;AS_VarDP=1|59|0;BaseQRankSum=-0.485;DP=60;MQRankSum=0.000;QUALapprox=1885;RAW_GT_COUNT=0,0,1;RAW_MQandDP=215001,60;ReadPosRankSum=0.664;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:1,59,0:60:99:1885,146,0,1888,177,1920:1,0,28,31 +chrX 4564396 . G . . END=4564624 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,107,1499 +chrX 4564625 . A G, 1654.06 . AS_QUALapprox=|1668|0;AS_VarDP=0|50|0;DP=52;QUALapprox=1668;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1668,150,0,1668,150,1668:0,0,27,23 +chrX 4564626 . T . . END=4565108 GT:DP:GQ:MIN_DP:PL 0/0:56:46:56:0,46,1282 +chrX 4565109 . A G, 1314.06 . AS_QUALapprox=|1328|0;AS_VarDP=0|43|0;DP=43;QUALapprox=1328;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154800,43;VarDP=43 GT:AD:DP:GQ:PL:SB 1/1:0,43,0:43:99:1328,128,0,1328,128,1328:0,0,19,24 +chrX 4565110 . C . . END=4565236 GT:DP:GQ:MIN_DP:PL 0/0:42:78:42:0,78,1121 +chrX 4565237 . G T, 1178.06 . AS_QUALapprox=|1192|0;AS_VarDP=0|35|0;DP=36;QUALapprox=1192;RAW_GT_COUNT=0,0,1;RAW_MQandDP=128482,36;VarDP=35 GT:AD:DP:GQ:PL:SB 1/1:0,35,0:35:99:1192,105,0,1192,105,1192:0,0,18,17 +chrX 4565238 . T . . END=4566310 GT:DP:GQ:MIN_DP:PL 0/0:56:74:56:0,74,1168 +chrX 4566311 . A G, 1683.06 . AS_QUALapprox=|1697|0;AS_VarDP=0|52|0;DP=54;QUALapprox=1697;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1697,156,0,1697,156,1697:0,0,23,29 +chrX 4566312 . A . . END=4567271 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,106,1393 +chrX 4567272 . T G, 1444.06 . AS_QUALapprox=|1458|0;AS_VarDP=0|47|0;DP=48;QUALapprox=1458;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1458,140,0,1458,140,1458:0,0,23,24 +chrX 4567273 . C . . END=4567589 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,111,1320 +chrX 4567590 . G T, 1629.06 . AS_QUALapprox=|1643|0;AS_VarDP=0|50|0;DP=50;QUALapprox=1643;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1643,150,0,1643,150,1643:0,0,25,25 +chrX 4567591 . T . . END=4568028 GT:DP:GQ:MIN_DP:PL 0/0:50:72:50:0,72,1062 +chrX 4568029 . G A, 1151.06 . AS_QUALapprox=|1165|0;AS_VarDP=0|36|0;DP=38;QUALapprox=1165;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;VarDP=36 GT:AD:DP:GQ:PL:SB 1/1:0,36,0:36:99:1165,108,0,1165,108,1165:0,0,16,20 +chrX 4568030 . T . . END=4568071 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,100,1196 +chrX 4568072 . C T, 1297.06 . AS_QUALapprox=|1311|0;AS_VarDP=0|38|0;DP=38;QUALapprox=1311;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;VarDP=38 GT:AD:DP:GQ:PL:SB 1/1:0,38,0:38:99:1311,114,0,1311,114,1311:0,0,19,19 +chrX 4568073 . A . . END=4568700 GT:DP:GQ:MIN_DP:PL 0/0:54:80:54:0,80,1277 +chrX 4568701 . G A, 525.64 . AS_QUALapprox=|533|0;AS_VarDP=22|22|0;BaseQRankSum=-2.327;DP=45;MQRankSum=1.045;QUALapprox=533;RAW_GT_COUNT=0,1,0;RAW_MQandDP=161316,45;ReadPosRankSum=-0.434;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:22,22,0:44:99:533,0,634,599,699,1298:8,14,11,11 +chrX 4568702 . A . . END=4568782 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,117,1410 +chrX 4568783 . C G, 2109.06 . AS_QUALapprox=|2123|0;AS_VarDP=0|65|0;DP=66;QUALapprox=2123;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=65 GT:AD:DP:GQ:PL:SB 1/1:0,65,0:65:99:2123,195,0,2123,195,2123:0,0,36,29 +chrX 4568784 . A . . END=4569021 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 4569022 . T G, 1809.06 . AS_QUALapprox=|1823|0;AS_VarDP=0|57|0;DP=60;QUALapprox=1823;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1823,171,0,1823,171,1823:0,0,24,33 +chrX 4569023 . G . . END=4569467 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 4569468 . G A, 1927.06 . AS_QUALapprox=|1941|0;AS_VarDP=0|58|0;DP=64;QUALapprox=1941;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=58 GT:AD:DP:GQ:PL:SB 1/1:0,58,0:58:99:1941,174,0,1941,174,1941:0,0,40,18 +chrX 4569469 . T . . END=4569498 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 4569499 . A T, 1999.06 . AS_QUALapprox=|2013|0;AS_VarDP=0|60|0;DP=60;QUALapprox=2013;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:2013,180,0,2013,180,2013:0,0,39,21 +chrX 4569500 . T . . END=4569742 GT:DP:GQ:MIN_DP:PL 0/0:70:97:70:0,97,1609 +chrX 4569743 . C A, 2774.06 . AS_QUALapprox=|2788|0;AS_VarDP=0|86|0;DP=91;QUALapprox=2788;RAW_GT_COUNT=0,0,1;RAW_MQandDP=327600,91;VarDP=86 GT:AD:DP:GQ:PL:SB 1/1:0,86,0:86:99:2788,257,0,2788,257,2788:0,0,40,46 +chrX 4569744 . T . . END=4570388 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,102,1484 +chrX 4570389 . T C, 1756.06 . AS_QUALapprox=|1770|0;AS_VarDP=0|53|0;DP=55;QUALapprox=1770;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1770,159,0,1770,159,1770:0,0,29,24 +chrX 4570390 . T . . END=4570598 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,99,1400 +chrX 4570599 . T C, 1783.06 . AS_QUALapprox=|1797|0;AS_VarDP=0|54|0;DP=54;QUALapprox=1797;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:1797,162,0,1797,162,1797:0,0,24,30 +chrX 4570600 . C . . END=4571089 GT:DP:GQ:MIN_DP:PL 0/0:49:77:49:0,77,1052 +chrX 4571090 . C T, 1802.06 . AS_QUALapprox=|1816|0;AS_VarDP=0|54|0;DP=55;QUALapprox=1816;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:1816,162,0,1816,162,1816:0,0,37,17 +chrX 4571091 . T . . END=4571213 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,103,1800 +chrX 4571214 . GT G, 1361.03 . AS_QUALapprox=|1375|0;AS_VarDP=2|50|0;BaseQRankSum=0.494;DP=53;MQRankSum=0.000;QUALapprox=1375;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;ReadPosRankSum=0.190;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:2,50,0:52:99:1375,125,0,1379,150,1404:2,0,25,25 +chrX 4571216 . T . . END=4572812 GT:DP:GQ:MIN_DP:PL 0/0:51:73:51:0,73,1081 +chrX 4572813 . T C, 2182.06 . AS_QUALapprox=|2196|0;AS_VarDP=0|50|0;DP=50;QUALapprox=2196;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,50,0:50:99:0|1:4572813_T_C:2196,151,0,2196,151,2196:4572813:0,0,29,21 +chrX 4572814 . T . . END=4572820 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 4572821 . A G, 2182.06 . AS_QUALapprox=|2196|0;AS_VarDP=0|50|0;DP=50;QUALapprox=2196;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,50,0:50:99:0|1:4572813_T_C:2196,151,0,2196,151,2196:4572813:0,0,29,21 +chrX 4572822 . G . . END=4573629 GT:DP:GQ:MIN_DP:PL 0/0:53:51:53:0,51,864 +chrX 4573630 . C T, 1470.06 . AS_QUALapprox=|1484|0;AS_VarDP=0|45|0;DP=45;QUALapprox=1484;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162000,45;VarDP=45 GT:AD:DP:GQ:PL:SB 1/1:0,45,0:45:99:1484,135,0,1484,135,1484:0,0,22,23 +chrX 4573631 . G . . END=4574546 GT:DP:GQ:MIN_DP:PL 0/0:44:49:44:0,49,993 +chrX 4574547 . G A, 1302.06 . AS_QUALapprox=|1316|0;AS_VarDP=0|39|0;DP=41;QUALapprox=1316;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147600,41;VarDP=39 GT:AD:DP:GQ:PL:SB 1/1:0,39,0:39:99:1316,117,0,1316,117,1316:0,0,19,20 +chrX 4574548 . C . . END=4576614 GT:DP:GQ:MIN_DP:PL 0/0:56:91:56:0,91,1192 +chrX 4576615 . G A, 1664.06 . AS_QUALapprox=|1678|0;AS_VarDP=0|52|0;DP=53;QUALapprox=1678;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1678,156,0,1678,156,1678:0,0,33,19 +chrX 4576616 . A . . END=4576963 GT:DP:GQ:MIN_DP:PL 0/0:50:80:50:0,80,1150 +chrX 4576964 . T G, 1276.06 . AS_QUALapprox=|1290|0;AS_VarDP=0|39|0;DP=39;QUALapprox=1290;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140400,39;VarDP=39 GT:AD:DP:GQ:PL:SB 1/1:0,39,0:39:99:1290,117,0,1290,117,1290:0,0,19,20 +chrX 4576965 . C . . END=4577066 GT:DP:GQ:MIN_DP:PL 0/0:38:60:38:0,60,900 +chrX 4577067 . C A, 1219.06 . AS_QUALapprox=|1233|0;AS_VarDP=0|40|0;DP=40;QUALapprox=1233;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136710,40;VarDP=40 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,40,0:40:99:0|1:4577067_C_A:1233,116,0,1233,116,1233:4577067:0,0,24,16 +chrX 4577068 . C . . END=4577068 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,800 +chrX 4577069 . A . . END=4577094 GT:DP:GQ:MIN_DP:PL 0/0:43:42:43:0,42,630 +chrX 4577095 . AAAAATT A, 1485.03 . AS_QUALapprox=|1499|0;AS_VarDP=1|43|0;BaseQRankSum=2.105;DP=47;MQRankSum=-0.330;QUALapprox=1499;RAW_GT_COUNT=0,0,1;RAW_MQandDP=155910,47;ReadPosRankSum=-0.041;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:1,43,0:44:99:0|1:4577067_C_A:1499,124,0,1501,127,1504:4577067:0,1,27,16 +chrX 4577102 . A . . END=4577103 GT:DP:GQ:MIN_DP:PL 0/0:38:57:38:0,57,1101 +chrX 4577104 . C . . END=4577104 GT:DP:GQ:MIN_DP:PL 0/0:38:6:38:0,6,1043 +chrX 4577105 . C . . END=4579141 GT:DP:GQ:MIN_DP:PL 0/0:51:46:51:0,46,1061 +chrX 4579142 . T A, 1928.06 . AS_QUALapprox=|1942|0;AS_VarDP=0|60|0;DP=65;QUALapprox=1942;RAW_GT_COUNT=0,0,1;RAW_MQandDP=232000,65;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:1942,180,0,1942,180,1942:0,0,21,39 +chrX 4579143 . T . . END=4579352 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 4579353 . T TAC, 1808.03 . AS_QUALapprox=|1822|0;AS_VarDP=0|51|0;DP=60;QUALapprox=1822;RAW_GT_COUNT=0,0,1;RAW_MQandDP=213129,60;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1822,153,0,1822,153,1822:0,0,27,24 +chrX 4579354 . A . . END=4579982 GT:DP:GQ:MIN_DP:PL 0/0:55:78:55:0,78,1430 +chrX 4579983 . G A, 1736.06 . AS_QUALapprox=|1750|0;AS_VarDP=0|54|0;DP=56;QUALapprox=1750;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:1750,162,0,1750,162,1750:0,0,20,34 +chrX 4579984 . A . . END=4580213 GT:DP:GQ:MIN_DP:PL 0/0:55:94:55:0,94,1688 +chrX 4580214 . A T, 1680.06 . AS_QUALapprox=|1694|0;AS_VarDP=1|54|0;BaseQRankSum=1.628;DP=58;MQRankSum=0.000;QUALapprox=1694;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;ReadPosRankSum=-1.670;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:1,54,0:55:99:1694,140,0,1697,162,1719:0,1,23,31 +chrX 4580215 . T . . END=4580414 GT:DP:GQ:MIN_DP:PL 0/0:46:68:46:0,68,958 +chrX 4580415 . ATT A, 1079.03 . AS_QUALapprox=|1093|0;AS_VarDP=0|29|0;DP=33;QUALapprox=1093;RAW_GT_COUNT=0,0,1;RAW_MQandDP=117801,33;VarDP=29 GT:AD:DP:GQ:PL:SB 1/1:0,29,0:29:87:1093,87,0,1093,87,1093:0,0,14,15 +chrX 4580418 . T . . END=4580804 GT:DP:GQ:MIN_DP:PL 0/0:34:30:33:0,30,912 +chrX 4580805 . T A, 1372.06 . AS_QUALapprox=|1386|0;AS_VarDP=0|41|0;DP=42;QUALapprox=1386;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151200,42;VarDP=41 GT:AD:DP:GQ:PL:SB 1/1:0,41,0:41:99:1386,123,0,1386,123,1386:0,0,22,19 +chrX 4580806 . C . . END=4581089 GT:DP:GQ:MIN_DP:PL 0/0:59:85:59:0,85,1401 +chrX 4581090 . G T, 1608.06 . AS_QUALapprox=|1622|0;AS_VarDP=0|50|0;DP=54;QUALapprox=1622;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1622,149,0,1622,149,1622:0,0,28,22 +chrX 4581091 . T . . END=4581991 GT:DP:GQ:MIN_DP:PL 0/0:18:29:17:0,29,546 +chrX 4581992 . A . . END=4581992 GT:DP:GQ:MIN_DP:PL 0/0:15:10:15:0,10,452 +chrX 4581993 . G . . END=4581995 GT:DP:GQ:MIN_DP:PL 0/0:15:23:15:0,23,462 +chrX 4581996 . T . . END=4581997 GT:DP:GQ:MIN_DP:PL 0/0:16:13:16:0,13,457 +chrX 4581998 . C . . END=4581998 GT:DP:GQ:MIN_DP:PL 0/0:16:23:16:0,23,446 +chrX 4581999 . A . . END=4581999 GT:DP:GQ:MIN_DP:PL 0/0:16:13:16:0,13,467 +chrX 4582000 . T . . END=4582000 GT:DP:GQ:MIN_DP:PL 0/0:16:23:16:0,23,456 +chrX 4582001 . C . . END=4582001 GT:DP:GQ:MIN_DP:PL 0/0:16:13:16:0,13,425 +chrX 4582002 . T . . END=4582002 GT:DP:GQ:MIN_DP:PL 0/0:15:36:15:0,36,540 +chrX 4582003 . C . . END=4582015 GT:DP:GQ:MIN_DP:PL 0/0:16:0:16:0,0,0 +chrX 4582016 . A . . END=4582037 GT:DP:GQ:MIN_DP:PL 0/0:42:22:42:0,22,1113 +chrX 4582038 . A . . END=4582038 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,1162 +chrX 4582039 . A . . END=4582487 GT:DP:GQ:MIN_DP:PL 0/0:49:35:42:0,35,1100 +chrX 4582488 . C T, 2091.06 . AS_QUALapprox=|2105|0;AS_VarDP=1|64|0;BaseQRankSum=2.573;DP=66;MQRankSum=0.000;QUALapprox=2105;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;ReadPosRankSum=-0.533;VarDP=65 GT:AD:DP:GQ:PL:SB 1/1:1,64,0:65:99:2105,185,0,2107,192,2114:0,1,31,33 +chrX 4582489 . A . . END=4582750 GT:DP:GQ:MIN_DP:PL 0/0:61:38:59:0,38,1632 +chrX 4582751 . A . . END=4582751 GT:DP:GQ:MIN_DP:PL 0/0:62:12:62:0,12,1697 +chrX 4582752 . T . . END=4582752 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 4582753 . T . . END=4582753 GT:DP:GQ:MIN_DP:PL 0/0:64:0:64:0,0,1578 +chrX 4582754 . T . . END=4582754 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 4582755 . G GTGTA, 2349.03 . AS_QUALapprox=|2363|0;AS_VarDP=0|53|0;DP=58;QUALapprox=2363;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,53,0:53:99:0|1:4582755_G_GTGTA:2363,159,0,2363,160,2363:4582755:0,0,26,27 +chrX 4582756 . T . . END=4582776 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 4582777 . G A, 2256.06 . AS_QUALapprox=|2270|0;AS_VarDP=0|53|0;DP=54;QUALapprox=2270;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,53,0:53:99:0|1:4582755_G_GTGTA:2270,159,0,2270,159,2270:4582755:0,0,27,26 +chrX 4582778 . T . . END=4583561 GT:DP:GQ:MIN_DP:PL 0/0:56:71:56:0,71,1151 +chrX 4583562 . G C, 1374.06 . AS_QUALapprox=|1388|0;AS_VarDP=0|45|0;DP=46;QUALapprox=1388;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;VarDP=45 GT:AD:DP:GQ:PL:SB 1/1:0,45,0:45:99:1388,134,0,1388,134,1388:0,0,27,18 +chrX 4583563 . C . . END=4584370 GT:DP:GQ:MIN_DP:PL 0/0:56:95:56:0,95,1250 +chrX 4584371 . G A, 1266.06 . AS_QUALapprox=|1280|0;AS_VarDP=0|39|0;DP=42;QUALapprox=1280;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151200,42;VarDP=39 GT:AD:DP:GQ:PL:SB 1/1:0,39,0:39:99:1280,117,0,1280,117,1280:0,0,16,23 +chrX 4584372 . T . . END=4584855 GT:DP:GQ:MIN_DP:PL 0/0:48:93:48:0,93,1171 +chrX 4584856 . A G, 1780.06 . AS_QUALapprox=|1794|0;AS_VarDP=0|56|0;DP=56;QUALapprox=1794;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1794,167,0,1794,167,1794:0,0,29,27 +chrX 4584857 . G . . END=4585207 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,119,1697 +chrX 4585208 . A G, 1499.06 . AS_QUALapprox=|1513|0;AS_VarDP=0|47|0;DP=49;QUALapprox=1513;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1513,141,0,1513,141,1513:0,0,23,24 +chrX 4585209 . T . . END=4585437 GT:DP:GQ:MIN_DP:PL 0/0:44:38:39:0,38,1067 +chrX 4585438 . G . . END=4585442 GT:DP:GQ:MIN_DP:PL 0/0:52:0:52:0,0,794 +chrX 4585443 . A . . END=4585443 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,117,1755 +chrX 4585444 . G GAAAAA, 1554.03 . AS_QUALapprox=|1568|0;AS_VarDP=0|36|0;DP=47;QUALapprox=1568;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165200,47;VarDP=36 GT:AD:DP:GQ:PL:SB 1/1:0,36,0:36:99:1568,107,0,1569,108,1569:0,0,27,9 +chrX 4585445 . A . . END=4585458 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,111,1665 +chrX 4585459 . G . . END=4585459 GT:DP:GQ:MIN_DP:PL 0/0:59:0:59:0,0,1373 +chrX 4585460 . A . . END=4585460 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 4585461 . T . . END=4585463 GT:DP:GQ:MIN_DP:PL 0/0:63:0:63:0,0,1293 +chrX 4585464 . A . . END=4585464 GT:DP:GQ:MIN_DP:PL 0/0:62:22:62:0,22,1606 +chrX 4585465 . G . . END=4585465 GT:DP:GQ:MIN_DP:PL 0/0:58:0:58:0,0,1448 +chrX 4585466 . A . . END=4585466 GT:DP:GQ:MIN_DP:PL 0/0:61:29:61:0,29,1611 +chrX 4585467 . C . . END=4585467 GT:DP:GQ:MIN_DP:PL 0/0:59:14:59:0,14,1583 +chrX 4585468 . T . . END=4585637 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,102,1731 +chrX 4585638 . T C, 1995.06 . AS_QUALapprox=|2009|0;AS_VarDP=0|62|0;DP=65;QUALapprox=2009;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:0,62,0:62:99:2009,186,0,2009,186,2009:0,0,22,40 +chrX 4585639 . G . . END=4585796 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 4585797 . A G, 2090.06 . AS_QUALapprox=|2104|0;AS_VarDP=0|64|0;DP=67;QUALapprox=2104;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=64 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:2104,192,0,2104,192,2104:0,0,34,30 +chrX 4585798 . A . . END=4585913 GT:DP:GQ:MIN_DP:PL 0/0:59:97:59:0,97,1354 +chrX 4585914 . G GGGA, 1962.03 . AS_QUALapprox=|1976|0;AS_VarDP=0|44|0;DP=49;QUALapprox=1976;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=44 GT:AD:DP:GQ:PL:SB 1/1:0,44,0:44:99:1976,132,0,1976,132,1976:0,0,22,22 +chrX 4585915 . G . . END=4585951 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,110,1394 +chrX 4585952 . A C, 1549.06 . AS_QUALapprox=|1563|0;AS_VarDP=0|49|0;DP=52;QUALapprox=1563;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1563,146,0,1563,146,1563:0,0,20,29 +chrX 4585953 . A . . END=4586066 GT:DP:GQ:MIN_DP:PL 0/0:47:97:47:0,97,1314 +chrX 4586067 . G A, 1383.06 . AS_QUALapprox=|1397|0;AS_VarDP=0|42|0;DP=42;QUALapprox=1397;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151200,42;VarDP=42 GT:AD:DP:GQ:PL:SB 1/1:0,42,0:42:99:1397,126,0,1397,126,1397:0,0,20,22 +chrX 4586068 . A . . END=4586138 GT:DP:GQ:MIN_DP:PL 0/0:21:39:19:0,39,585 +chrX 4586139 . CAA C,CA, 93.56 . AS_QUALapprox=|91|101|0;AS_VarDP=6|5|5|0;BaseQRankSum=2.611;DP=39;MQRankSum=2.466;QUALapprox=101;RAW_GT_COUNT=0,1,0;RAW_MQandDP=132069,39;ReadPosRankSum=-1.439;VarDP=16 GT:AD:DP:GQ:PL:SB 0/2:6,5,5,0:16:10:101,10,280,0,37,66,124,219,121,295:0,6,9,1 +chrX 4586142 . A . . END=4586228 GT:DP:GQ:MIN_DP:PL 0/0:42:37:40:0,37,1142 +chrX 4586229 . G C, 1880.06 . AS_QUALapprox=|1894|0;AS_VarDP=0|61|0;DP=64;QUALapprox=1894;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=61 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:1894,181,0,1894,181,1894:0,0,38,23 +chrX 4586230 . G . . END=4586765 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,103,1260 +chrX 4586766 . T C, 1191.06 . AS_QUALapprox=|1205|0;AS_VarDP=0|39|0;DP=39;QUALapprox=1205;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140400,39;VarDP=39 GT:AD:DP:GQ:PL:SB 1/1:0,39,0:39:99:1205,117,0,1205,117,1205:0,0,22,17 +chrX 4586767 . T . . END=4586823 GT:DP:GQ:MIN_DP:PL 0/0:35:71:35:0,71,962 +chrX 4586824 . C CA, 717.03 . AS_QUALapprox=|731|0;AS_VarDP=0|33|0;DP=46;QUALapprox=731;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162500,46;VarDP=33 GT:AD:DP:GQ:PL:SB 1/1:0,33,0:33:98:731,98,0,731,98,731:0,0,16,17 +chrX 4586825 . A . . END=4586849 GT:DP:GQ:MIN_DP:PL 0/0:42:65:42:0,65,1051 +chrX 4586850 . A G, 1388.06 . AS_QUALapprox=|1402|0;AS_VarDP=0|46|0;DP=47;QUALapprox=1402;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1402,136,0,1402,136,1402:0,0,23,23 +chrX 4586851 . G . . END=4587462 GT:DP:GQ:MIN_DP:PL 0/0:62:75:62:0,75,1043 +chrX 4587463 . C G, 2049.06 . AS_QUALapprox=|2063|0;AS_VarDP=0|66|0;DP=68;QUALapprox=2063;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;VarDP=66 GT:AD:DP:GQ:PL:SB 1/1:0,66,0:66:99:2063,197,0,2063,197,2063:0,0,31,35 +chrX 4587464 . T . . END=4587929 GT:DP:GQ:MIN_DP:PL 0/0:46:54:46:0,54,1103 +chrX 4587930 . C CT, 713.03 . AS_QUALapprox=|727|0;AS_VarDP=0|30|0;DP=41;QUALapprox=727;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147600,41;VarDP=30 GT:AD:DP:GQ:PL:SB 1/1:0,30,0:30:89:727,89,0,727,89,727:0,0,16,14 +chrX 4587931 . T . . END=4587964 GT:DP:GQ:MIN_DP:PL 0/0:36:48:21:0,48,590 +chrX 4587965 . T A, 418.64 . AS_QUALapprox=|426|0;AS_VarDP=8|17|0;BaseQRankSum=-1.184;DP=25;MQRankSum=0.000;QUALapprox=426;RAW_GT_COUNT=0,1,0;RAW_MQandDP=90000,25;ReadPosRankSum=-0.058;VarDP=25 GT:AD:DP:GQ:PL:SB 0/1:8,17,0:25:99:426,0,194,450,244,694:3,5,8,9 +chrX 4587966 . C . . END=4588195 GT:DP:GQ:MIN_DP:PL 0/0:29:37:28:0,37,738 +chrX 4588196 . GTT G, 1107.03 . AS_QUALapprox=|1121|0;AS_VarDP=0|31|0;DP=40;QUALapprox=1121;RAW_GT_COUNT=0,0,1;RAW_MQandDP=144000,40;VarDP=31 GT:AD:DP:GQ:PL:SB 1/1:0,31,0:31:93:1121,93,0,1121,93,1121:0,0,16,15 +chrX 4588199 . T . . END=4588608 GT:DP:GQ:MIN_DP:PL 0/0:43:70:43:0,70,1006 +chrX 4588609 . C T, 1395.06 . AS_QUALapprox=|1409|0;AS_VarDP=0|42|0;DP=46;QUALapprox=1409;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;VarDP=42 GT:AD:DP:GQ:PL:SB 1/1:0,42,0:42:99:1409,126,0,1409,126,1409:0,0,24,18 +chrX 4588610 . A . . END=4588749 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1529 +chrX 4588750 . A G, 1771.06 . AS_QUALapprox=|1785|0;AS_VarDP=0|55|0;DP=57;QUALapprox=1785;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1785,164,0,1785,164,1785:0,0,33,22 +chrX 4588751 . G . . END=4589060 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,111,1435 +chrX 4589061 . G . . END=4589061 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,1221 +chrX 4589062 . T . . END=4589690 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,99,1291 +chrX 4589691 . A G, 1777.06 . AS_QUALapprox=|1791|0;AS_VarDP=0|57|0;DP=59;QUALapprox=1791;RAW_GT_COUNT=0,0,1;RAW_MQandDP=211825,59;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1791,170,0,1791,170,1791:0,0,34,23 +chrX 4589692 . C . . END=4590175 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,113,1578 +chrX 4590176 . C G, 1673.06 . AS_QUALapprox=|1687|0;AS_VarDP=0|51|0;DP=52;QUALapprox=1687;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1687,153,0,1687,153,1687:0,0,21,30 +chrX 4590177 . A . . END=4590394 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,117,1568 +chrX 4590395 . A G, 1813.06 . AS_QUALapprox=|1827|0;AS_VarDP=1|56|0;BaseQRankSum=-0.320;DP=58;MQRankSum=0.000;QUALapprox=1827;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;ReadPosRankSum=0.122;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:1,56,0:57:99:1827,136,0,1830,168,1861:1,0,25,31 +chrX 4590396 . C . . END=4590490 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 4590491 . T G, 1592.06 . AS_QUALapprox=|1606|0;AS_VarDP=0|50|0;DP=51;QUALapprox=1606;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1606,149,0,1606,149,1606:0,0,26,24 +chrX 4590492 . T . . END=4590700 GT:DP:GQ:MIN_DP:PL 0/0:48:78:48:0,78,1320 +chrX 4590701 . TA T, 1172.03 . AS_QUALapprox=|1186|0;AS_VarDP=1|43|0;DP=52;MQRankSum=6.710;QUALapprox=1186;RAW_GT_COUNT=0,0,1;RAW_MQandDP=185200,52;VarDP=44 GT:AD:DP:GQ:PL:SB 1/1:1,43,0:44:99:1186,105,0,1189,129,1213:0,1,15,28 +chrX 4590703 . A . . END=4591028 GT:DP:GQ:MIN_DP:PL 0/0:55:96:55:0,96,1270 +chrX 4591029 . G C, 1728.06 . AS_QUALapprox=|1742|0;AS_VarDP=0|53|0;DP=53;QUALapprox=1742;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1742,159,0,1742,159,1742:0,0,31,22 +chrX 4591030 . T . . END=4591961 GT:DP:GQ:MIN_DP:PL 0/0:51:85:51:0,85,1275 +chrX 4591962 . C A, 2000.06 . AS_QUALapprox=|2014|0;AS_VarDP=0|63|0;DP=67;QUALapprox=2014;RAW_GT_COUNT=0,0,1;RAW_MQandDP=241200,67;VarDP=63 GT:AD:DP:GQ:PL:SB 1/1:0,63,0:63:99:2014,189,0,2014,189,2014:0,0,37,26 +chrX 4591963 . C . . END=4592371 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 4592372 . T C, 1618.06 . AS_QUALapprox=|1632|0;AS_VarDP=0|50|0;DP=55;QUALapprox=1632;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1632,150,0,1632,150,1632:0,0,24,26 +chrX 4592373 . G . . END=4592677 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 4592678 . T C, 2162.06 . AS_QUALapprox=|2176|0;AS_VarDP=0|68|0;DP=72;QUALapprox=2176;RAW_GT_COUNT=0,0,1;RAW_MQandDP=259200,72;VarDP=68 GT:AD:DP:GQ:PL:SB 1/1:0,68,0:68:99:2176,204,0,2176,204,2176:0,0,36,32 +chrX 4592679 . A . . END=4592695 GT:DP:GQ:MIN_DP:PL 0/0:68:99:68:0,120,1800 +chrX 4592696 . A G, 2055.06 . AS_QUALapprox=|2069|0;AS_VarDP=0|64|0;DP=69;QUALapprox=2069;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=64 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:2069,192,0,2069,192,2069:0,0,35,29 +chrX 4592697 . C . . END=4592851 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 4592852 . A G, 1884.06 . AS_QUALapprox=|1898|0;AS_VarDP=0|60|0;DP=65;QUALapprox=1898;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:1898,179,0,1898,179,1898:0,0,25,35 +chrX 4592853 . T . . END=4593013 GT:DP:GQ:MIN_DP:PL 0/0:64:70:64:0,70,1748 +chrX 4593014 . A AAT, 2434.03 . AS_QUALapprox=|2448|0;AS_VarDP=0|56|0;DP=59;QUALapprox=2448;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:2448,168,0,2448,169,2448:0,0,27,29 +chrX 4593015 . A . . END=4593017 GT:DP:GQ:MIN_DP:PL 0/0:59:73:59:0,73,1731 +chrX 4593018 . A . . END=4593018 GT:DP:GQ:MIN_DP:PL 0/0:59:3:59:0,3,1643 +chrX 4593019 . A . . END=4593873 GT:DP:GQ:MIN_DP:PL 0/0:57:96:57:0,96,1280 +chrX 4593874 . CT C, 482.03 . AS_QUALapprox=|496|0;AS_VarDP=0|22|0;DP=43;QUALapprox=496;RAW_GT_COUNT=0,0,1;RAW_MQandDP=148721,43;VarDP=22 GT:AD:DP:GQ:PL:SB 1/1:0,22,0:22:66:496,66,0,496,66,496:0,0,9,13 +chrX 4593876 . T . . END=4593920 GT:DP:GQ:MIN_DP:PL 0/0:24:34:23:0,34,635 +chrX 4593921 . G T, 795.06 . AS_QUALapprox=|809|0;AS_VarDP=0|25|0;DP=25;QUALapprox=809;RAW_GT_COUNT=0,0,1;RAW_MQandDP=90000,25;VarDP=25 GT:AD:DP:GQ:PL:SB 1/1:0,25,0:25:75:809,75,0,809,75,809:0,0,11,14 +chrX 4593922 . G . . END=4594047 GT:DP:GQ:MIN_DP:PL 0/0:44:70:44:0,70,938 +chrX 4594048 . A G, 1751.06 . AS_QUALapprox=|1765|0;AS_VarDP=0|57|0;DP=58;QUALapprox=1765;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1765,170,0,1765,170,1765:0,0,33,24 +chrX 4594049 . T . . END=4594245 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,100,1529 +chrX 4594246 . T C, 1618.06 . AS_QUALapprox=|1632|0;AS_VarDP=0|50|0;DP=51;QUALapprox=1632;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1632,150,0,1632,150,1632:0,0,26,24 +chrX 4594247 . G . . END=4594354 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 4594355 . A G, 1613.06 . AS_QUALapprox=|1627|0;AS_VarDP=0|52|0;DP=54;QUALapprox=1627;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1627,155,0,1627,155,1627:0,0,29,23 +chrX 4594356 . A . . END=4595049 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,103,1489 +chrX 4595050 . C A, 1517.06 . AS_QUALapprox=|1531|0;AS_VarDP=0|47|0;DP=47;QUALapprox=1531;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1531,141,0,1531,141,1531:0,0,21,26 +chrX 4595051 . A . . END=4595901 GT:DP:GQ:MIN_DP:PL 0/0:53:86:53:0,86,1159 +chrX 4595902 . A G, 1249.06 . AS_QUALapprox=|1263|0;AS_VarDP=0|40|0;DP=40;QUALapprox=1263;RAW_GT_COUNT=0,0,1;RAW_MQandDP=144000,40;VarDP=40 GT:AD:DP:GQ:PL:SB 1/1:0,40,0:40:99:1263,120,0,1263,120,1263:0,0,19,21 +chrX 4595903 . G . . END=4596060 GT:DP:GQ:MIN_DP:PL 0/0:47:87:47:0,87,1295 +chrX 4596061 . A AT, 917.03 . AS_QUALapprox=|931|0;AS_VarDP=0|37|0;DP=50;QUALapprox=931;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=37 GT:AD:DP:GQ:PL:SB 1/1:0,37,0:37:99:931,110,0,931,110,931:0,0,18,19 +chrX 4596062 . T . . END=4596502 GT:DP:GQ:MIN_DP:PL 0/0:46:29:41:0,29,992 +chrX 4596503 . C . . END=4596503 GT:DP:GQ:MIN_DP:PL 0/0:61:9:61:0,9,1572 +chrX 4596504 . G . . END=4596874 GT:DP:GQ:MIN_DP:PL 0/0:53:94:53:0,94,1360 +chrX 4596875 . G A, 1658.06 . AS_QUALapprox=|1672|0;AS_VarDP=0|52|0;DP=53;QUALapprox=1672;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1672,156,0,1672,156,1672:0,0,31,21 +chrX 4596876 . C . . END=4597310 GT:DP:GQ:MIN_DP:PL 0/0:52:86:52:0,86,1231 +chrX 4597311 . A G, 1753.06 . AS_QUALapprox=|1767|0;AS_VarDP=0|53|0;DP=53;QUALapprox=1767;RAW_GT_COUNT=0,0,1;RAW_MQandDP=189136,53;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1767,159,0,1767,159,1767:0,0,22,31 +chrX 4597312 . T . . END=4597433 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,99,1334 +chrX 4597434 . CA C, 892.91 . AS_QUALapprox=|909|0;AS_VarDP=0|36|0;DP=53;QUALapprox=909;RAW_GT_COUNT=0,0,1;RAW_MQandDP=184887,53;VarDP=36 GT:AD:DP:GQ:PL:SB 1/1:0,36,0:36:99:909,108,0,934,113,1032:0,0,17,16 +chrX 4597436 . A . . END=4597714 GT:DP:GQ:MIN_DP:PL 0/0:52:65:52:0,65,1304 +chrX 4597715 . T G, 1445.06 . AS_QUALapprox=|1459|0;AS_VarDP=0|44|0;DP=45;QUALapprox=1459;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162000,45;VarDP=44 GT:AD:DP:GQ:PL:SB 1/1:0,44,0:44:99:1459,132,0,1459,132,1459:0,0,13,31 +chrX 4597716 . T . . END=4597773 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,103,1361 +chrX 4597774 . T C, 1411.06 . AS_QUALapprox=|1425|0;AS_VarDP=0|43|0;DP=44;QUALapprox=1425;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158400,44;VarDP=43 GT:AD:DP:GQ:PL:SB 1/1:0,43,0:43:99:1425,129,0,1425,129,1425:0,0,19,24 +chrX 4597775 . G . . END=4598044 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,107,1329 +chrX 4598045 . CGTGTGT C, 1632.03 . AS_QUALapprox=|1646|0;AS_VarDP=0|37|0;DP=47;QUALapprox=1646;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;VarDP=37 GT:AD:DP:GQ:PL:SB 1/1:0,37,0:37:99:1646,112,0,1646,112,1646:0,0,20,17 +chrX 4598052 . G . . END=4598065 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,110,1327 +chrX 4598066 . G . . END=4598066 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,1191 +chrX 4598067 . T . . END=4598531 GT:DP:GQ:MIN_DP:PL 0/0:24:31:22:0,31,630 +chrX 4598532 . GAT G, 36.61 . AS_QUALapprox=|44|0;AS_VarDP=2|2|0;BaseQRankSum=0.000;DP=19;MQRankSum=0.674;QUALapprox=44;RAW_GT_COUNT=0,1,0;RAW_MQandDP=66400,19;ReadPosRankSum=0.967;VarDP=4 GT:AD:DP:GQ:PL:SB 0/1:2,2,0:4:19:44,0,19,48,26,74:0,2,0,2 +chrX 4598535 . A . . END=4598794 GT:DP:GQ:MIN_DP:PL 0/0:29:24:24:0,24,360 +chrX 4598795 . T C, 1212.06 . AS_QUALapprox=|1226|0;AS_VarDP=0|37|0;DP=39;QUALapprox=1226;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140400,39;VarDP=37 GT:AD:DP:GQ:PL:SB 1/1:0,37,0:37:99:1226,111,0,1226,111,1226:0,0,25,12 +chrX 4598796 . A . . END=4599215 GT:DP:GQ:MIN_DP:PL 0/0:52:76:52:0,76,1216 +chrX 4599216 . C T, 2026.06 . AS_QUALapprox=|2040|0;AS_VarDP=0|61|0;DP=62;QUALapprox=2040;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=61 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:2040,183,0,2040,183,2040:0,0,33,28 +chrX 4599217 . G . . END=4599517 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,108,1505 +chrX 4599518 . A G, 1455.06 . AS_QUALapprox=|1469|0;AS_VarDP=0|45|0;DP=47;QUALapprox=1469;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;VarDP=45 GT:AD:DP:GQ:PL:SB 1/1:0,45,0:45:99:1469,135,0,1469,135,1469:0,0,25,20 +chrX 4599519 . T . . END=4600423 GT:DP:GQ:MIN_DP:PL 0/0:55:85:55:0,85,1405 +chrX 4600424 . G A, 1474.06 . AS_QUALapprox=|1488|0;AS_VarDP=0|44|0;DP=45;QUALapprox=1488;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162000,45;VarDP=44 GT:AD:DP:GQ:PL:SB 1/1:0,44,0:44:99:1488,132,0,1488,132,1488:0,0,23,21 +chrX 4600425 . C . . END=4600631 GT:DP:GQ:MIN_DP:PL 0/0:50:89:50:0,89,1361 +chrX 4600632 . G A, 892.64 . AS_QUALapprox=|900|0;AS_VarDP=22|32|0;BaseQRankSum=-0.604;DP=55;MQRankSum=0.000;QUALapprox=900;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=1.515;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:22,32,0:54:99:900,0,565,966,662,1628:12,10,17,15 +chrX 4600633 . G . . END=4600792 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,120,1800 +chrX 4600793 . A T, 2080.06 . AS_QUALapprox=|2094|0;AS_VarDP=1|65|0;BaseQRankSum=-0.457;DP=68;MQRankSum=0.000;QUALapprox=2094;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;ReadPosRankSum=0.026;VarDP=66 GT:AD:DP:GQ:PL:SB 1/1:1,65,0:66:99:2094,164,0,2097,195,2129:0,1,28,37 +chrX 4600794 . C . . END=4601487 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,113,1548 +chrX 4601488 . G A, 1679.06 . AS_QUALapprox=|1693|0;AS_VarDP=0|50|0;DP=50;QUALapprox=1693;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1693,150,0,1693,150,1693:0,0,24,26 +chrX 4601489 . A . . END=4601646 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,104,1584 +chrX 4601647 . T C, 1866.06 . AS_QUALapprox=|1880|0;AS_VarDP=0|60|0;DP=61;QUALapprox=1880;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:1880,180,0,1880,180,1880:0,0,32,28 +chrX 4601648 . G . . END=4602082 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,105,1652 +chrX 4602083 . AT A, 1802.03 . AS_QUALapprox=|1816|0;AS_VarDP=0|41|0;DP=48;QUALapprox=1816;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=41 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,41,0:41:99:0|1:4602083_AT_A:1816,123,0,1816,123,1816:4602083:0,0,20,21 +chrX 4602085 . T . . END=4602102 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,109,1457 +chrX 4602103 . C T, 2225.06 . AS_QUALapprox=|2239|0;AS_VarDP=0|54|0;DP=54;QUALapprox=2239;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,54,0:54:99:0|1:4602083_AT_A:2239,162,0,2239,162,2239:4602083:0,0,28,26 +chrX 4602104 . A . . END=4602909 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,101,1509 +chrX 4602910 . T C, 1340.06 . AS_QUALapprox=|1354|0;AS_VarDP=0|41|0;DP=44;QUALapprox=1354;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158400,44;VarDP=41 GT:AD:DP:GQ:PL:SB 1/1:0,41,0:41:99:1354,122,0,1354,122,1354:0,0,15,26 +chrX 4602911 . T . . END=4602979 GT:DP:GQ:MIN_DP:PL 0/0:39:89:39:0,89,1236 +chrX 4602980 . A T, 1343.06 . AS_QUALapprox=|1357|0;AS_VarDP=0|40|0;DP=42;QUALapprox=1357;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151200,42;VarDP=40 GT:AD:DP:GQ:PL:SB 1/1:0,40,0:40:99:1357,120,0,1357,120,1357:0,0,20,20 +chrX 4602981 . A . . END=4603037 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,104,1226 +chrX 4603038 . C A, 1490.06 . AS_QUALapprox=|1504|0;AS_VarDP=0|46|0;DP=47;QUALapprox=1504;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1504,138,0,1504,138,1504:0,0,26,20 +chrX 4603039 . T . . END=4603424 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,116,1463 +chrX 4603425 . T C, 1834.06 . AS_QUALapprox=|1848|0;AS_VarDP=0|56|0;DP=57;QUALapprox=1848;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1848,168,0,1848,168,1848:0,0,27,29 +chrX 4603426 . T . . END=4603766 GT:DP:GQ:MIN_DP:PL 0/0:57:79:57:0,79,1320 +chrX 4603767 . A T, 2160.06 . AS_QUALapprox=|2174|0;AS_VarDP=0|64|0;DP=65;QUALapprox=2174;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=64 GT:AD:DP:GQ:PL:SB 1/1:0,64,0:64:99:2174,193,0,2174,193,2174:0,0,33,31 +chrX 4603768 . G . . END=4603913 GT:DP:GQ:MIN_DP:PL 0/0:64:91:64:0,91,1460 +chrX 4603914 . G A,GA, 632.60 . AS_QUALapprox=|0|640|0;AS_VarDP=14|3|26|0;BaseQRankSum=-0.478;DP=58;MQRankSum=0.000;QUALapprox=640;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=1.712;VarDP=43 GT:AD:DP:GQ:PL:SB 0/2:14,3,26,0:43:99:640,668,1391,0,332,322,719,1244,405,1261:8,6,17,12 +chrX 4603915 . A . . END=4603995 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 4603996 . T C, 2129.06 . AS_QUALapprox=|2143|0;AS_VarDP=0|68|0;DP=68;QUALapprox=2143;RAW_GT_COUNT=0,0,1;RAW_MQandDP=244800,68;VarDP=68 GT:AD:DP:GQ:PL:SB 1/1:0,68,0:68:99:2143,203,0,2143,203,2143:0,0,37,31 +chrX 4603997 . C . . END=4604253 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 4604254 . T C, 1405.06 . AS_QUALapprox=|1419|0;AS_VarDP=0|44|0;DP=46;QUALapprox=1419;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;VarDP=44 GT:AD:DP:GQ:PL:SB 1/1:0,44,0:44:99:1419,131,0,1419,131,1419:0,0,16,28 +chrX 4604255 . C . . END=4605112 GT:DP:GQ:MIN_DP:PL 0/0:54:55:54:0,55,1013 +chrX 4605113 . T TTATC, 1539.03 . AS_QUALapprox=|1553|0;AS_VarDP=0|35|0;DP=37;QUALapprox=1553;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133200,37;VarDP=35 GT:AD:DP:GQ:PL:SB 1/1:0,35,0:35:99:1553,105,0,1553,105,1553:0,0,24,11 +chrX 4605114 . T . . END=4605202 GT:DP:GQ:MIN_DP:PL 0/0:38:86:38:0,86,1048 +chrX 4605203 . CATTT C, 940.60 . AS_QUALapprox=|948|0;AS_VarDP=20|24|0;BaseQRankSum=-0.460;DP=44;MQRankSum=0.000;QUALapprox=948;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=-0.305;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:20,24,0:44:99:948,0,735,1008,808,1815:12,8,17,7 +chrX 4605208 . A . . END=4605636 GT:DP:GQ:MIN_DP:PL 0/0:52:92:52:0,92,1363 +chrX 4605637 . G C, 1698.06 . AS_QUALapprox=|1712|0;AS_VarDP=1|54|0;BaseQRankSum=2.186;DP=58;MQRankSum=0.000;QUALapprox=1712;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;ReadPosRankSum=-0.315;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:1,54,0:55:99:1712,154,0,1714,161,1721:0,1,26,28 +chrX 4605638 . C . . END=4605658 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 4605659 . A G, 1681.06 . AS_QUALapprox=|1695|0;AS_VarDP=0|55|0;DP=56;QUALapprox=1695;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1695,164,0,1695,164,1695:0,0,25,30 +chrX 4605660 . T . . END=4605947 GT:DP:GQ:MIN_DP:PL 0/0:51:86:51:0,86,1334 +chrX 4605948 . G A, 1737.06 . AS_QUALapprox=|1751|0;AS_VarDP=0|53|0;DP=54;QUALapprox=1751;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1751,159,0,1751,159,1751:0,0,22,31 +chrX 4605949 . G . . END=4606285 GT:DP:GQ:MIN_DP:PL 0/0:30:29:27:0,29,759 +chrX 4606286 . C . . END=4606286 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,770 +chrX 4606287 . CAAAAAA C,CA, 527.02 . AS_QUALapprox=|474|439|0;AS_VarDP=3|10|7|0;BaseQRankSum=-0.578;DP=41;MQRankSum=-0.509;QUALapprox=544;RAW_GT_COUNT=0,0,1;RAW_MQandDP=139600,41;ReadPosRankSum=-0.193;VarDP=20 GT:AD:DP:GQ:PL:SB 1/2:3,10,7,0:20:70:544,70,184,105,0,114,426,189,177,491:1,2,10,7 +chrX 4606294 . A . . END=4606313 GT:DP:GQ:MIN_DP:PL 0/0:46:44:46:0,44,1271 +chrX 4606314 . A . . END=4606314 GT:DP:GQ:MIN_DP:PL 0/0:48:5:48:0,5,1320 +chrX 4606315 . A . . END=4606315 GT:DP:GQ:MIN_DP:PL 0/0:50:46:50:0,46,1439 +chrX 4606316 . A . . END=4606317 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,1101 +chrX 4606318 . A . . END=4606805 GT:DP:GQ:MIN_DP:PL 0/0:43:24:41:0,24,1022 +chrX 4606806 . A T, 1846.06 . AS_QUALapprox=|1860|0;AS_VarDP=0|57|0;DP=60;QUALapprox=1860;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1860,171,0,1860,171,1860:0,0,29,28 +chrX 4606807 . A . . END=4607629 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,110,1603 +chrX 4607630 . A T, 1768.06 . AS_QUALapprox=|1782|0;AS_VarDP=0|53|0;DP=54;QUALapprox=1782;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1782,159,0,1782,159,1782:0,0,24,29 +chrX 4607631 . G . . END=4608053 GT:DP:GQ:MIN_DP:PL 0/0:47:82:47:0,82,1161 +chrX 4608054 . C T, 424.64 . AS_QUALapprox=|432|0;AS_VarDP=30|19|0;BaseQRankSum=-1.942;DP=49;MQRankSum=0.000;QUALapprox=432;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=0.934;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:30,19,0:49:99:432,0,876,522,933,1454:13,17,8,11 +chrX 4608055 . C . . END=4608164 GT:DP:GQ:MIN_DP:PL 0/0:45:96:45:0,96,1276 +chrX 4608165 . G A, 1331.06 . AS_QUALapprox=|1345|0;AS_VarDP=0|40|0;DP=41;QUALapprox=1345;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147600,41;VarDP=40 GT:AD:DP:GQ:PL:SB 1/1:0,40,0:40:99:1345,120,0,1345,120,1345:0,0,23,17 +chrX 4608166 . T . . END=4608483 GT:DP:GQ:MIN_DP:PL 0/0:51:74:51:0,74,1210 +chrX 4608484 . T C, 2064.06 . AS_QUALapprox=|2078|0;AS_VarDP=0|65|0;DP=66;QUALapprox=2078;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=65 GT:AD:DP:GQ:PL:SB 1/1:0,65,0:65:99:2078,195,0,2078,195,2078:0,0,32,33 +chrX 4608485 . G . . END=4608739 GT:DP:GQ:MIN_DP:PL 0/0:41:65:41:0,65,894 +chrX 4608740 . G A, 1281.06 . AS_QUALapprox=|1295|0;AS_VarDP=0|39|0;DP=41;QUALapprox=1295;RAW_GT_COUNT=0,0,1;RAW_MQandDP=147600,41;VarDP=39 GT:AD:DP:GQ:PL:SB 1/1:0,39,0:39:99:1295,117,0,1295,117,1295:0,0,20,19 +chrX 4608741 . T . . END=4608846 GT:DP:GQ:MIN_DP:PL 0/0:42:43:42:0,43,591 +chrX 4608847 . ATACATATATTTGCTATTAGATAG A, 206.96 . AS_QUALapprox=|862|0;AS_VarDP=0|20|0;DP=21;QUALapprox=862;RAW_GT_COUNT=0,0,1;RAW_MQandDP=70740,21;VarDP=20 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,20,0:20:61:0|1:4608847_ATACATATATTTGCTATTAGATAG_A:862,61,0,551,62,517:4608847:0,0,15,5 +chrX 4608871 . C . . END=4608877 GT:DP:GQ:MIN_DP:PL 0/0:21:24:20:0,24,540 +chrX 4608878 . ACAAATATATTTGCTATTAGATAGCAAATATACAAATATATTTGCTATTAGATAGCAAATATACAAATATATTTGCTATTAGATAGCAAATATACAAATATGTTTGCTATTAGATAGCAAATATACAAATATGTTTGCTATTAGATAGCAAATATACAAATATG A, 125.01 . AS_QUALapprox=|139|0;AS_VarDP=1|18|0;DP=41;MQRankSum=-0.171;QUALapprox=139;RAW_GT_COUNT=0,0,1;RAW_MQandDP=134058,41;VarDP=19 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:1,18,0:19:26:0|1:4608847_ATACATATATTTGCTATTAGATAG_A:139,26,0,141,32,147:4608847:0,1,13,5 +chrX 4609042 . T . . END=4609192 GT:DP:GQ:MIN_DP:PL 0/0:47:44:47:0,44,673 +chrX 4609193 . TTATA T, 1776.03 . AS_QUALapprox=|1790|0;AS_VarDP=0|40|0;DP=49;QUALapprox=1790;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=40 GT:AD:DP:GQ:PL:SB 1/1:0,40,0:40:99:1790,121,0,1790,121,1790:0,0,16,24 +chrX 4609198 . T . . END=4610109 GT:DP:GQ:MIN_DP:PL 0/0:49:78:49:0,78,1057 +chrX 4610110 . CT C, 540.60 . AS_QUALapprox=|548|0;AS_VarDP=21|16|0;BaseQRankSum=-1.028;DP=40;MQRankSum=-2.365;QUALapprox=548;RAW_GT_COUNT=0,1,0;RAW_MQandDP=136000,40;ReadPosRankSum=-0.184;VarDP=37 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,16,0:37:99:0|1:4610110_CT_C:548,0,818,611,866,1477:4610110:12,9,4,12 +chrX 4610112 . T . . END=4610125 GT:DP:GQ:MIN_DP:PL 0/0:39:90:39:0,90,1350 +chrX 4610126 . C CTT, 618.60 . AS_QUALapprox=|626|0;AS_VarDP=23|18|0;BaseQRankSum=-0.244;DP=41;MQRankSum=-2.325;QUALapprox=626;RAW_GT_COUNT=0,1,0;RAW_MQandDP=139600,41;ReadPosRankSum=-1.028;VarDP=41 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,18,0:41:99:0|1:4610110_CT_C:626,0,912,695,966,1661:4610110:14,9,5,13 +chrX 4610127 . T . . END=4610149 GT:DP:GQ:MIN_DP:PL 0/0:35:75:35:0,75,1125 +chrX 4610150 . T TTC,TTCTTTCTTTCTTTC, 420.60 . AS_QUALapprox=|428|137|0;AS_VarDP=23|7|0|0;BaseQRankSum=1.061;DP=35;MQRankSum=-3.207;QUALapprox=428;RAW_GT_COUNT=0,1,0;RAW_MQandDP=118000,35;ReadPosRankSum=-0.204;VarDP=30 GT:AD:DP:GQ:PL:SB 0/1:23,7,0,0:30:99:428,0,930,291,946,1236,402,963,1252,1350:16,7,2,5 +chrX 4610151 . T . . END=4610167 GT:DP:GQ:MIN_DP:PL 0/0:36:63:36:0,63,1033 +chrX 4610168 . C T, 324.64 . AS_QUALapprox=|332|0;AS_VarDP=23|10|0;BaseQRankSum=0.482;DP=41;MQRankSum=-2.674;QUALapprox=332;RAW_GT_COUNT=0,1,0;RAW_MQandDP=141600,41;ReadPosRankSum=-0.102;VarDP=33 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,10,0:33:99:0|1:4610110_CT_C:332,0,936,402,967,1368:4610110:15,8,2,8 +chrX 4610169 . T . . END=4610177 GT:DP:GQ:MIN_DP:PL 0/0:39:90:39:0,90,1232 +chrX 4610178 . GTCTCTC G,CTCTCTC, 596.64 . AS_QUALapprox=|209|604|0;AS_VarDP=17|0|10|0;BaseQRankSum=2.107;DP=42;MQRankSum=-2.304;QUALapprox=604;RAW_GT_COUNT=0,1,0;RAW_MQandDP=145200,42;ReadPosRankSum=0.075;VarDP=27 GT:AD:DP:GQ:PL:SB 0/2:17,0,10,0:27:99:604,395,1125,0,697,875,552,1143,829,1361:9,8,2,8 +chrX 4610182 . C *,CTT, 418.01 . AS_QUALapprox=|0|610|0;AS_VarDP=17|0|10|0;BaseQRankSum=0.752;DP=37;MQRankSum=-2.304;QUALapprox=610;RAW_GT_COUNT=0,1,0;RAW_MQandDP=127200,37;ReadPosRankSum=0.000;VarDP=27 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|2:17,0,10,0:27:99:0|1:4610110_CT_C:610,398,1087,0,695,791,549,1118,781,1299:4610110:9,8,2,8 +chrX 4610184 . C *,CTTTG, 421.01 . AS_QUALapprox=|0|613|0;AS_VarDP=17|0|10|0;BaseQRankSum=0.312;DP=38;MQRankSum=-2.304;QUALapprox=613;RAW_GT_COUNT=0,1,0;RAW_MQandDP=130800,38;ReadPosRankSum=0.075;VarDP=27 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|2:17,0,10,0:27:99:0|1:4610110_CT_C:613,401,1089,0,695,750,549,1118,759,1280:4610110:9,8,2,8 +chrX 4610185 . T . . END=4614944 GT:DP:GQ:MIN_DP:PL 0/0:34:32:34:0,32,921 +chrX 4614945 . T . . END=4614945 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,797 +chrX 4614946 . G . . END=4614961 GT:DP:GQ:MIN_DP:PL 0/0:36:64:36:0,64,967 +chrX 4614962 . G . . END=4614963 GT:DP:GQ:MIN_DP:PL 0/0:33:3:33:0,3,833 +chrX 4614964 . A . . END=4614972 GT:DP:GQ:MIN_DP:PL 0/0:33:70:33:0,70,1067 +chrX 4614973 . T . . END=4614974 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,738 +chrX 4614975 . G . . END=4615071 GT:DP:GQ:MIN_DP:PL 0/0:40:47:40:0,47,893 +chrX 4615072 . T . . END=4615072 GT:DP:GQ:MIN_DP:PL 0/0:46:14:46:0,14,979 +chrX 4615073 . G . . END=4619159 GT:DP:GQ:MIN_DP:PL 0/0:48:27:42:0,27,1061 +chrX 4619160 . C T, 475.64 . AS_QUALapprox=|483|0;AS_VarDP=22|18|0;BaseQRankSum=0.355;DP=43;MQRankSum=0.000;QUALapprox=483;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154800,43;ReadPosRankSum=-1.034;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:22,18,0:40:99:483,0,585,549,639,1188:14,8,5,13 +chrX 4619161 . A . . END=4620809 GT:DP:GQ:MIN_DP:PL 0/0:52:69:52:0,69,1082 +chrX 4620810 . TA T, 796.60 . AS_QUALapprox=|804|0;AS_VarDP=17|21|0;BaseQRankSum=0.749;DP=46;MQRankSum=0.000;QUALapprox=804;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=0.414;VarDP=38 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:17,21,0:38:99:0|1:4620810_TA_T:804,0,632,855,695,1550:4620810:5,12,13,8 +chrX 4620812 . A . . END=4620833 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,100,1232 +chrX 4620834 . T C, 797.64 . AS_QUALapprox=|805|0;AS_VarDP=19|22|0;BaseQRankSum=-2.162;DP=41;MQRankSum=0.000;QUALapprox=805;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147600,41;ReadPosRankSum=1.439;VarDP=41 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:19,22,0:41:99:0|1:4620810_TA_T:805,0,700,862,766,1627:4620810:5,14,13,9 +chrX 4620835 . G . . END=4625675 GT:DP:GQ:MIN_DP:PL 0/0:40:31:30:0,31,884 +chrX 4625676 . C . . END=4625676 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,1058 +chrX 4625677 . A . . END=4625741 GT:DP:GQ:MIN_DP:PL 0/0:53:94:53:0,94,1371 +chrX 4625742 . TA T, 532.60 . AS_QUALapprox=|540|0;AS_VarDP=22|24|0;BaseQRankSum=0.187;DP=51;MQRankSum=0.000;QUALapprox=540;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-0.099;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:22,24,0:46:99:540,0,480,606,552,1158:12,10,8,16 +chrX 4625744 . A . . END=4626246 GT:DP:GQ:MIN_DP:PL 0/0:49:82:49:0,82,1072 +chrX 4626247 . C . . END=4626247 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,879 +chrX 4626248 . C . . END=4626260 GT:DP:GQ:MIN_DP:PL 0/0:40:63:40:0,63,945 +chrX 4626261 . C CATAT, 570.60 . AS_QUALapprox=|578|0;AS_VarDP=3|14|0;BaseQRankSum=-1.095;DP=31;MQRankSum=-0.309;QUALapprox=578;RAW_GT_COUNT=0,1,0;RAW_MQandDP=107600,31;ReadPosRankSum=-1.578;VarDP=17 GT:AD:DP:GQ:PL:SB 0/1:3,14,0:17:84:578,0,84,588,127,714:2,1,7,7 +chrX 4626262 . A . . END=4626293 GT:DP:GQ:MIN_DP:PL 0/0:42:69:42:0,69,1035 +chrX 4626294 . G . . END=4626295 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,763 +chrX 4626296 . A . . END=4633709 GT:DP:GQ:MIN_DP:PL 0/0:37:35:33:0,35,855 +chrX 4633710 . T C, 699.64 . AS_QUALapprox=|707|0;AS_VarDP=26|26|0;BaseQRankSum=-0.387;DP=53;MQRankSum=0.000;QUALapprox=707;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=-0.156;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:26,26,0:52:99:707,0,717,786,796,1581:17,9,18,8 +chrX 4633711 . T . . END=4636134 GT:DP:GQ:MIN_DP:PL 0/0:56:54:56:0,54,1018 +chrX 4636135 . T TTG, 530.60 . AS_QUALapprox=|538|0;AS_VarDP=14|18|0;BaseQRankSum=0.790;DP=44;MQRankSum=-0.819;QUALapprox=538;RAW_GT_COUNT=0,1,0;RAW_MQandDP=156096,44;ReadPosRankSum=-0.438;VarDP=32 GT:AD:DP:GQ:PL:SB 0/1:14,18,0:32:99:538,0,405,580,460,1040:8,6,8,10 +chrX 4636136 . T . . END=4637207 GT:DP:GQ:MIN_DP:PL 0/0:44:39:41:0,39,1217 +chrX 4637208 . TAAAAG T, 992.60 . AS_QUALapprox=|1000|0;AS_VarDP=22|26|0;BaseQRankSum=-0.550;DP=49;MQRankSum=0.000;QUALapprox=1000;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=0.798;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:22,26,0:48:99:1000,0,835,1066,913,1979:7,15,14,12 +chrX 4637214 . A . . END=4637829 GT:DP:GQ:MIN_DP:PL 0/0:48:80:48:0,80,1137 +chrX 4637830 . C T, 1134.64 . AS_QUALapprox=|1142|0;AS_VarDP=20|42|0;BaseQRankSum=-0.095;DP=66;MQRankSum=0.000;QUALapprox=1142;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=0.075;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:20,42,0:62:99:1142,0,411,1201,537,1738:11,9,16,26 +chrX 4637831 . T . . END=4637948 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,111,1220 +chrX 4637949 . G T, 450.64 . AS_QUALapprox=|458|0;AS_VarDP=27|17|0;BaseQRankSum=2.278;DP=45;MQRankSum=0.000;QUALapprox=458;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=0.615;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:27,17,0:44:99:458,0,721,539,772,1312:13,14,9,8 +chrX 4637950 . A . . END=4639223 GT:DP:GQ:MIN_DP:PL 0/0:57:80:57:0,80,1251 +chrX 4639224 . A G, 564.64 . AS_QUALapprox=|572|0;AS_VarDP=28|23|0;BaseQRankSum=-0.752;DP=52;MQRankSum=0.000;QUALapprox=572;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=0.379;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:28,23,0:51:99:572,0,785,656,853,1509:14,14,13,10 +chrX 4639225 . C . . END=4641998 GT:DP:GQ:MIN_DP:PL 0/0:57:40:57:0,40,720 +chrX 4641999 . T . . END=4641999 GT:DP:GQ:MIN_DP:PL 0/0:27:12:27:0,12,759 +chrX 4642000 . C . . END=4642003 GT:DP:GQ:MIN_DP:PL 0/0:27:42:27:0,42,630 +chrX 4642004 . C . . END=4642005 GT:DP:GQ:MIN_DP:PL 0/0:24:0:24:0,0,511 +chrX 4642006 . C CA, 228 . AS_QUALapprox=|242|0;AS_VarDP=1|14|0;BaseQRankSum=-0.319;DP=34;MQRankSum=-0.554;QUALapprox=242;RAW_GT_COUNT=0,0,1;RAW_MQandDP=114797,34;ReadPosRankSum=-0.610;VarDP=15 GT:AD:DP:GQ:PL:SB 1/1:1,14,0:15:24:242,24,0,245,41,262:1,0,5,9 +chrX 4642007 . A . . END=4642033 GT:DP:GQ:MIN_DP:PL 0/0:40:55:40:0,55,1125 +chrX 4642034 . T . . END=4642034 GT:DP:GQ:MIN_DP:PL 0/0:39:18:39:0,18,976 +chrX 4642035 . A . . END=4642918 GT:DP:GQ:MIN_DP:PL 0/0:53:57:53:0,57,1105 +chrX 4642919 . T C, 652.64 . AS_QUALapprox=|660|0;AS_VarDP=31|25|0;BaseQRankSum=-1.123;DP=57;MQRankSum=0.000;QUALapprox=660;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=0.561;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:31,25,0:56:99:660,0,889,753,964,1717:19,12,16,9 +chrX 4642920 . G . . END=4650035 GT:DP:GQ:MIN_DP:PL 0/0:54:23:52:0,23,968 +chrX 4650036 . T . . END=4650038 GT:DP:GQ:MIN_DP:PL 0/0:52:0:52:0,0,1186 +chrX 4650039 . CAAAAAAAAAAAAAAA C, 811.60 . AS_QUALapprox=|819|0;AS_VarDP=15|21|0;BaseQRankSum=0.029;DP=51;MQRankSum=1.738;QUALapprox=819;RAW_GT_COUNT=0,1,0;RAW_MQandDP=179600,51;ReadPosRankSum=0.543;VarDP=36 GT:AD:DP:GQ:PL:SB 0/1:15,21,0:36:99:819,0,530,864,596,1460:9,6,11,10 +chrX 4650055 . A . . END=4650055 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1266 +chrX 4650056 . A . . END=4650056 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,105,1575 +chrX 4650057 . A . . END=4650060 GT:DP:GQ:MIN_DP:PL 0/0:52:0:52:0,0,1306 +chrX 4650061 . A . . END=4650069 GT:DP:GQ:MIN_DP:PL 0/0:51:35:51:0,35,1445 +chrX 4650070 . G . . END=4650070 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1326 +chrX 4650071 . A . . END=4650655 GT:DP:GQ:MIN_DP:PL 0/0:57:68:57:0,68,1265 +chrX 4650656 . A . . END=4650656 GT:DP:GQ:MIN_DP:PL 0/0:54:18:54:0,18,1499 +chrX 4650657 . T . . END=4650668 GT:DP:GQ:MIN_DP:PL 0/0:55:91:55:0,91,1559 +chrX 4650669 . G . . END=4650669 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,1282 +chrX 4650670 . T . . END=4650672 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 4650673 . G . . END=4650673 GT:DP:GQ:MIN_DP:PL 0/0:52:0:52:0,0,1301 +chrX 4650674 . T . . END=4650701 GT:DP:GQ:MIN_DP:PL 0/0:43:84:43:0,84,1227 +chrX 4650702 . C CTTTTTTTTTTTTTTTT, 424.60 . AS_QUALapprox=|432|0;AS_VarDP=9|12|0;BaseQRankSum=0.146;DP=45;MQRankSum=0.000;QUALapprox=432;RAW_GT_COUNT=0,1,0;RAW_MQandDP=160000,45;ReadPosRankSum=-0.107;VarDP=21 GT:AD:DP:GQ:PL:SB 0/1:9,12,0:21:99:432,0,345,462,381,843:3,6,9,3 +chrX 4650703 . T . . END=4650725 GT:DP:GQ:MIN_DP:PL 0/0:55:72:55:0,72,1080 +chrX 4650726 . G . . END=4650734 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,536 +chrX 4650735 . T . . END=4650735 GT:DP:GQ:MIN_DP:PL 0/0:41:87:41:0,87,1305 +chrX 4650736 . C . . END=4650736 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,665 +chrX 4650737 . T . . END=4650738 GT:DP:GQ:MIN_DP:PL 0/0:41:86:41:0,86,1281 +chrX 4650739 . G . . END=4650740 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,933 +chrX 4650741 . T . . END=4650947 GT:DP:GQ:MIN_DP:PL 0/0:47:41:47:0,41,1066 +chrX 4650948 . G A, 646.64 . AS_QUALapprox=|654|0;AS_VarDP=26|26|0;BaseQRankSum=-0.365;DP=59;MQRankSum=0.000;QUALapprox=654;RAW_GT_COUNT=0,1,0;RAW_MQandDP=210400,59;ReadPosRankSum=0.970;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:26,26,0:52:99:654,0,644,731,721,1452:14,12,15,11 +chrX 4650949 . T . . END=4651797 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,110,1578 +chrX 4651798 . T A,TA, 472.64 . AS_QUALapprox=|480|0|0;AS_VarDP=28|22|0|0;BaseQRankSum=-0.693;DP=55;MQRankSum=0.000;QUALapprox=480;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-0.733;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:28,22,0,0:50:99:480,0,806,593,782,1457,589,837,1427,1449:13,15,9,13 +chrX 4651799 . A . . END=4653297 GT:DP:GQ:MIN_DP:PL 0/0:58:48:58:0,48,1230 +chrX 4653298 . T A, 697.64 . AS_QUALapprox=|705|0;AS_VarDP=27|26|0;BaseQRankSum=-0.761;DP=55;MQRankSum=0.000;QUALapprox=705;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-0.739;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:27,26,0:53:99:705,0,730,786,808,1593:12,15,16,10 +chrX 4653299 . A . . END=4653496 GT:DP:GQ:MIN_DP:PL 0/0:56:91:56:0,91,1300 +chrX 4653497 . CTTTTTTTTTTTTTTTTTTTT C, 900.60 . AS_QUALapprox=|908|0;AS_VarDP=20|23|0;BaseQRankSum=1.213;DP=54;MQRankSum=2.538;QUALapprox=908;RAW_GT_COUNT=0,1,0;RAW_MQandDP=184730,54;ReadPosRankSum=1.472;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:20,23,0:43:99:908,0,769,968,840,1808:11,9,13,10 +chrX 4653518 . T . . END=4653529 GT:DP:GQ:MIN_DP:PL 0/0:50:87:50:0,87,1350 +chrX 4653530 . G . . END=4653530 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,858 +chrX 4653531 . A . . END=4654160 GT:DP:GQ:MIN_DP:PL 0/0:43:36:40:0,36,1122 +chrX 4654161 . T A, 714.64 . AS_QUALapprox=|722|0;AS_VarDP=25|27|0;BaseQRankSum=-0.181;DP=52;MQRankSum=0.000;QUALapprox=722;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=0.504;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:25,27,0:52:99:722,0,663,797,744,1541:16,9,16,11 +chrX 4654162 . G . . END=4654727 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,114,1432 +chrX 4654728 . A T, 1028.64 . AS_QUALapprox=|1036|0;AS_VarDP=18|26|0;BaseQRankSum=0.132;DP=47;MQRankSum=0.000;QUALapprox=1036;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=0.752;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:18,26,0:44:99:0|1:4654728_A_T:1036,0,637,1090,715,1805:4654728:11,7,13,13 +chrX 4654729 . G . . END=4654737 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,108,1620 +chrX 4654738 . T C, 1091.64 . AS_QUALapprox=|1099|0;AS_VarDP=15|28|0;BaseQRankSum=-2.746;DP=43;MQRankSum=0.000;QUALapprox=1099;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154800,43;ReadPosRankSum=-0.357;VarDP=43 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:15,28,0:43:99:0|1:4654728_A_T:1099,0,546,1144,630,1774:4654728:10,5,13,15 +chrX 4654739 . G . . END=4660838 GT:DP:GQ:MIN_DP:PL 0/0:46:30:43:0,30,1001 +chrX 4660839 . T . . END=4660839 GT:DP:GQ:MIN_DP:PL 0/0:50:0:50:0,0,1146 +chrX 4660840 . A . . END=4662147 GT:DP:GQ:MIN_DP:PL 0/0:56:49:56:0,49,1207 +chrX 4662148 . T G, 613.64 . AS_QUALapprox=|621|0;AS_VarDP=28|25|0;BaseQRankSum=0.587;DP=57;MQRankSum=0.000;QUALapprox=621;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=1.836;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:28,25,0:53:99:621,0,693,704,767,1471:13,15,15,10 +chrX 4662149 . G . . END=4665633 GT:DP:GQ:MIN_DP:PL 0/0:52:52:52:0,52,982 +chrX 4665634 . A T, 698.64 . AS_QUALapprox=|706|0;AS_VarDP=33|26|0;BaseQRankSum=-1.583;DP=61;MQRankSum=0.000;QUALapprox=706;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=0.397;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:33,26,0:59:99:706,0,969,806,1047,1853:19,14,13,13 +chrX 4665635 . T . . END=4676754 GT:DP:GQ:MIN_DP:PL 0/0:55:44:55:0,44,690 +chrX 4676755 . C CT, 361.60 . AS_QUALapprox=|369|0;AS_VarDP=19|20|0;BaseQRankSum=-0.137;DP=55;MQRankSum=-0.923;QUALapprox=369;RAW_GT_COUNT=0,1,0;RAW_MQandDP=196000,55;ReadPosRankSum=-0.900;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:19,20,0:39:99:369,0,346,426,406,832:8,11,8,12 +chrX 4676756 . T . . END=4677148 GT:DP:GQ:MIN_DP:PL 0/0:40:36:40:0,36,817 +chrX 4677149 . A AATATATATAT, 189.60 . AS_QUALapprox=|197|0;AS_VarDP=12|6|0;BaseQRankSum=0.000;DP=35;MQRankSum=-2.523;QUALapprox=197;RAW_GT_COUNT=0,1,0;RAW_MQandDP=119545,35;ReadPosRankSum=0.047;VarDP=18 GT:AD:DP:GQ:PL:SB 0/1:12,6,0:18:99:197,0,475,234,493,727:5,7,4,2 +chrX 4677150 . A . . END=4677188 GT:DP:GQ:MIN_DP:PL 0/0:42:60:42:0,60,900 +chrX 4677189 . A . . END=4677198 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,844 +chrX 4677199 . A . . END=4680638 GT:DP:GQ:MIN_DP:PL 0/0:36:24:31:0,24,833 +chrX 4680639 . G . . END=4680639 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,839 +chrX 4680640 . A . . END=4681855 GT:DP:GQ:MIN_DP:PL 0/0:27:20:21:0,20,610 +chrX 4681856 . T . . END=4681856 GT:DP:GQ:MIN_DP:PL 0/0:18:0:18:0,0,139 +chrX 4681857 . G . . END=4681874 GT:DP:GQ:MIN_DP:PL 0/0:22:24:13:0,24,322 +chrX 4681875 . G . . END=4681878 GT:DP:GQ:MIN_DP:PL 0/0:14:0:14:0,0,238 +chrX 4681879 . A . . END=4681883 GT:DP:GQ:MIN_DP:PL 0/0:15:36:14:0,36,487 +chrX 4681884 . G . . END=4681884 GT:DP:GQ:MIN_DP:PL 0/0:17:0:17:0,0,432 +chrX 4681885 . G . . END=4681897 GT:DP:GQ:MIN_DP:PL 0/0:18:26:17:0,26,511 +chrX 4681898 . A . . END=4681898 GT:DP:GQ:MIN_DP:PL 0/0:18:0:18:0,0,427 +chrX 4681899 . A . . END=4681903 GT:DP:GQ:MIN_DP:PL 0/0:17:39:17:0,39,585 +chrX 4681904 . G . . END=4681904 GT:DP:GQ:MIN_DP:PL 0/0:17:16:17:0,16,522 +chrX 4681905 . G . . END=4681907 GT:DP:GQ:MIN_DP:PL 0/0:16:39:15:0,39,585 +chrX 4681908 . A . . END=4681909 GT:DP:GQ:MIN_DP:PL 0/0:16:13:16:0,13,467 +chrX 4681910 . G . . END=4681914 GT:DP:GQ:MIN_DP:PL 0/0:16:45:16:0,45,675 +chrX 4681915 . A . . END=4681915 GT:DP:GQ:MIN_DP:PL 0/0:17:16:17:0,16,481 +chrX 4681916 . A . . END=4681922 GT:DP:GQ:MIN_DP:PL 0/0:19:22:19:0,22,561 +chrX 4681923 . A . . END=4681925 GT:DP:GQ:MIN_DP:PL 0/0:18:0:18:0,0,452 +chrX 4681926 . G . . END=4681935 GT:DP:GQ:MIN_DP:PL 0/0:20:22:19:0,22,530 +chrX 4681936 . A . . END=4681936 GT:DP:GQ:MIN_DP:PL 0/0:21:0:21:0,0,551 +chrX 4681937 . G . . END=4681938 GT:DP:GQ:MIN_DP:PL 0/0:21:57:21:0,57,855 +chrX 4681939 . A . . END=4681939 GT:DP:GQ:MIN_DP:PL 0/0:22:0:22:0,0,508 +chrX 4681940 . G . . END=4681960 GT:DP:GQ:MIN_DP:PL 0/0:20:22:20:0,22,571 +chrX 4681961 . A . . END=4681966 GT:DP:GQ:MIN_DP:PL 0/0:21:0:21:0,0,522 +chrX 4681967 . G . . END=4682009 GT:DP:GQ:MIN_DP:PL 0/0:19:23:16:0,23,446 +chrX 4682010 . A . . END=4682011 GT:DP:GQ:MIN_DP:PL 0/0:19:0:19:0,0,501 +chrX 4682012 . G . . END=4682027 GT:DP:GQ:MIN_DP:PL 0/0:21:21:20:0,21,546 +chrX 4682028 . G . . END=4682028 GT:DP:GQ:MIN_DP:PL 0/0:21:0:21:0,0,591 +chrX 4682029 . G . . END=4682065 GT:DP:GQ:MIN_DP:PL 0/0:21:23:16:0,23,456 +chrX 4682066 . G . . END=4682066 GT:DP:GQ:MIN_DP:PL 0/0:24:13:24:0,13,685 +chrX 4682067 . G . . END=4682068 GT:DP:GQ:MIN_DP:PL 0/0:24:66:24:0,66,990 +chrX 4682069 . G . . END=4682069 GT:DP:GQ:MIN_DP:PL 0/0:24:13:24:0,13,665 +chrX 4682070 . G . . END=4682110 GT:DP:GQ:MIN_DP:PL 0/0:35:35:31:0,35,719 +chrX 4682111 . A . . END=4682111 GT:DP:GQ:MIN_DP:PL 0/0:34:18:34:0,18,863 +chrX 4682112 . G . . END=4684068 GT:DP:GQ:MIN_DP:PL 0/0:28:23:17:0,23,540 +chrX 4684069 . A . . END=4684078 GT:DP:GQ:MIN_DP:PL 0/0:20:0:20:0,0,225 +chrX 4684079 . T . . END=4684118 GT:DP:GQ:MIN_DP:PL 0/0:18:21:15:0,21,315 +chrX 4684119 . T TAC, 236.60 . AS_QUALapprox=|244|0;AS_VarDP=6|10|0;BaseQRankSum=-0.645;DP=20;MQRankSum=0.000;QUALapprox=244;RAW_GT_COUNT=0,1,0;RAW_MQandDP=65876,20;ReadPosRankSum=0.054;VarDP=16 GT:AD:DP:GQ:PL:SB 0/1:6,10,0:16:99:244,0,143,262,173,435:3,3,6,4 +chrX 4684120 . A . . END=4684194 GT:DP:GQ:MIN_DP:PL 0/0:22:28:20:0,28,630 +chrX 4684195 . T . . END=4684195 GT:DP:GQ:MIN_DP:PL 0/0:31:19:31:0,19,799 +chrX 4684196 . A . . END=4686598 GT:DP:GQ:MIN_DP:PL 0/0:55:43:55:0,43,907 +chrX 4686599 . A C, 803.64 . AS_QUALapprox=|811|0;AS_VarDP=28|31|0;BaseQRankSum=-0.594;DP=63;MQRankSum=1.086;QUALapprox=811;RAW_GT_COUNT=0,1,0;RAW_MQandDP=225504,63;ReadPosRankSum=-0.205;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:28,31,0:59:99:811,0,757,895,849,1744:15,13,14,17 +chrX 4686600 . T . . END=4691553 GT:DP:GQ:MIN_DP:PL 0/0:57:33:47:0,33,765 +chrX 4691554 . T C, 411.64 . AS_QUALapprox=|419|0;AS_VarDP=28|17|0;BaseQRankSum=0.757;DP=46;MQRankSum=0.000;QUALapprox=419;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=-0.550;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:28,17,0:45:99:419,0,754,503,804,1307:17,11,8,9 +chrX 4691555 . T . . END=4692197 GT:DP:GQ:MIN_DP:PL 0/0:58:65:58:0,65,1144 +chrX 4692198 . CT C,CTT, 97.60 . AS_QUALapprox=|2|105|0;AS_VarDP=4|4|9|0;BaseQRankSum=-0.985;DP=48;MQRankSum=-0.416;QUALapprox=105;RAW_GT_COUNT=0,1,0;RAW_MQandDP=166800,48;ReadPosRankSum=1.153;VarDP=17 GT:AD:DP:GQ:PL:SB 0/2:4,4,9,0:17:22:105,103,381,0,22,66,164,297,107,339:1,3,8,5 +chrX 4692200 . T . . END=4692222 GT:DP:GQ:MIN_DP:PL 0/0:53:57:53:0,57,855 +chrX 4692223 . G . . END=4692223 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,491 +chrX 4692224 . A . . END=4692318 GT:DP:GQ:MIN_DP:PL 0/0:31:38:29:0,38,788 +chrX 4692319 . T C, 449.64 . AS_QUALapprox=|457|0;AS_VarDP=17|16|0;BaseQRankSum=0.000;DP=34;MQRankSum=0.095;QUALapprox=457;RAW_GT_COUNT=0,1,0;RAW_MQandDP=115090,34;ReadPosRankSum=1.082;VarDP=33 GT:AD:DP:GQ:PL:SB 0/1:17,16,0:33:99:457,0,478,508,526,1034:7,10,6,10 +chrX 4692320 . T . . END=4694733 GT:DP:GQ:MIN_DP:PL 0/0:48:43:48:0,43,749 +chrX 4694734 . C A, 501.64 . AS_QUALapprox=|509|0;AS_VarDP=28|19|0;BaseQRankSum=0.673;DP=48;MQRankSum=0.000;QUALapprox=509;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=-1.247;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:28,19,0:47:99:509,0,802,593,859,1452:14,14,10,9 +chrX 4694735 . G . . END=4696130 GT:DP:GQ:MIN_DP:PL 0/0:56:67:56:0,67,890 +chrX 4696131 . ATG A, 192.60 . AS_QUALapprox=|200|0;AS_VarDP=15|9|0;BaseQRankSum=0.337;DP=29;MQRankSum=-1.205;QUALapprox=200;RAW_GT_COUNT=0,1,0;RAW_MQandDP=102825,29;ReadPosRankSum=-0.502;VarDP=24 GT:AD:DP:GQ:PL:SB 0/1:15,9,0:24:99:200,0,401,245,428,673:9,6,6,3 +chrX 4696134 . T . . END=4696162 GT:DP:GQ:MIN_DP:PL 0/0:28:52:28:0,52,810 +chrX 4696163 . GTATATA G, 210.60 . AS_QUALapprox=|218|0;AS_VarDP=5|7|0;BaseQRankSum=-0.830;DP=26;MQRankSum=0.812;QUALapprox=218;RAW_GT_COUNT=0,1,0;RAW_MQandDP=92025,26;ReadPosRankSum=0.235;VarDP=12 GT:AD:DP:GQ:PL:SB 0/1:5,7,0:12:78:218,0,78,232,99,331:3,2,3,4 +chrX 4696170 . T . . END=4696207 GT:DP:GQ:MIN_DP:PL 0/0:29:33:28:0,33,495 +chrX 4696208 . T . . END=4696213 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,685 +chrX 4696214 . C . . END=4696970 GT:DP:GQ:MIN_DP:PL 0/0:30:23:29:0,23,759 +chrX 4696971 . A AT, 837.60 . AS_QUALapprox=|845|0;AS_VarDP=32|29|0;BaseQRankSum=1.248;DP=64;MQRankSum=0.000;QUALapprox=845;RAW_GT_COUNT=0,1,0;RAW_MQandDP=228481,64;ReadPosRankSum=-0.137;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:32,29,0:61:99:845,0,959,941,1046,1987:14,18,11,18 +chrX 4696972 . T . . END=4698387 GT:DP:GQ:MIN_DP:PL 0/0:56:86:56:0,86,1210 +chrX 4698388 . T C, 524.64 . AS_QUALapprox=|532|0;AS_VarDP=22|24|0;BaseQRankSum=-3.230;DP=47;MQRankSum=0.000;QUALapprox=532;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=-0.341;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:22,24,0:46:99:532,0,603,598,674,1271:13,9,11,13 +chrX 4698389 . G . . END=4698781 GT:DP:GQ:MIN_DP:PL 0/0:53:77:53:0,77,1366 +chrX 4698782 . AT A, 779.60 . AS_QUALapprox=|787|0;AS_VarDP=19|30|0;BaseQRankSum=-2.228;DP=50;MQRankSum=0.000;QUALapprox=787;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=0.031;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:19,30,0:49:99:787,0,443,845,533,1377:12,7,15,15 +chrX 4698784 . T . . END=4699355 GT:DP:GQ:MIN_DP:PL 0/0:54:96:54:0,96,1301 +chrX 4699356 . C CTG, 338.60 . AS_QUALapprox=|346|0;AS_VarDP=17|16|0;BaseQRankSum=0.492;DP=58;MQRankSum=0.000;QUALapprox=346;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=1.514;VarDP=33 GT:AD:DP:GQ:PL:SB 0/1:17,16,0:33:99:346,0,393,398,441,839:9,8,7,9 +chrX 4699357 . T . . END=4699614 GT:DP:GQ:MIN_DP:PL 0/0:61:58:61:0,58,1302 +chrX 4699615 . A G, 744.64 . AS_QUALapprox=|752|0;AS_VarDP=28|29|0;BaseQRankSum=-0.296;DP=57;MQRankSum=0.000;QUALapprox=752;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-0.870;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:28,29,0:57:99:752,0,742,836,829,1665:15,13,13,16 +chrX 4699616 . T . . END=4700003 GT:DP:GQ:MIN_DP:PL 0/0:56:91:56:0,91,1246 +chrX 4700004 . G A, 682.64 . AS_QUALapprox=|690|0;AS_VarDP=31|27|0;BaseQRankSum=0.118;DP=58;MQRankSum=0.000;QUALapprox=690;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-0.561;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:31,27,0:58:99:690,0,804,783,885,1667:21,10,17,10 +chrX 4700005 . C . . END=4700153 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,111,1499 +chrX 4700154 . C CA, 321.60 . AS_QUALapprox=|329|0;AS_VarDP=24|16|0;BaseQRankSum=-0.302;DP=50;MQRankSum=0.000;QUALapprox=329;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=-0.331;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:24,16,0:40:99:329,0,556,402,604,1006:12,12,5,11 +chrX 4700155 . A . . END=4700690 GT:DP:GQ:MIN_DP:PL 0/0:51:84:51:0,84,1227 +chrX 4700691 . T C, 587.64 . AS_QUALapprox=|595|0;AS_VarDP=25|23|0;BaseQRankSum=-1.646;DP=52;MQRankSum=0.000;QUALapprox=595;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=0.744;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:25,23,0:48:99:595,0,705,670,774,1444:16,9,9,14 +chrX 4700692 . T . . END=4700781 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 4700782 . A G, 956.64 . AS_QUALapprox=|964|0;AS_VarDP=19|35|0;BaseQRankSum=-0.817;DP=55;MQRankSum=0.000;QUALapprox=964;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-0.671;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:19,35,0:54:99:964,0,468,1021,573,1595:6,13,18,17 +chrX 4700783 . A . . END=4702306 GT:DP:GQ:MIN_DP:PL 0/0:53:94:53:0,94,1350 +chrX 4702307 . T TAG,TATATAG, 1697.03 . AS_QUALapprox=|70|1711|0;AS_VarDP=0|0|41|0;DP=57;QUALapprox=1711;RAW_GT_COUNT=0,0,1;RAW_MQandDP=204516,57;VarDP=41 GT:AD:DP:GQ:PL:SB 2/2:0,0,41,0:41:99:1711,1641,2016,141,138,0,1705,1857,155,1864:0,0,21,20 +chrX 4702308 . A . . END=4703408 GT:DP:GQ:MIN_DP:PL 0/0:56:46:56:0,46,972 +chrX 4703409 . G A, 827.06 . AS_QUALapprox=|841|0;AS_VarDP=0|25|0;DP=26;QUALapprox=841;RAW_GT_COUNT=0,0,1;RAW_MQandDP=27293,26;VarDP=25 GT:AD:DP:GQ:PL:SB 1/1:0,25,0:25:75:841,75,0,841,75,841:0,0,16,9 +chrX 4703410 . A . . END=4704147 GT:DP:GQ:MIN_DP:PL 0/0:29:35:28:0,35,805 +chrX 4704148 . AAT A, 2348.03 . AS_QUALapprox=|2362|0;AS_VarDP=0|60|0;DP=69;QUALapprox=2362;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:2362,181,0,2362,181,2362:0,0,30,30 +chrX 4704151 . A . . END=4704761 GT:DP:GQ:MIN_DP:PL 0/0:56:73:56:0,73,1435 +chrX 4704762 . G GAT, 2060.03 . AS_QUALapprox=|2074|0;AS_VarDP=0|47|0;DP=50;QUALapprox=2074;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:2074,141,0,2074,141,2074:0,0,23,24 +chrX 4704763 . A . . END=4705173 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,114,1594 +chrX 4705174 . AATAG A,AATAGATAG, 1579.02 . AS_QUALapprox=|900|741|0;AS_VarDP=0|22|17|0;DP=56;QUALapprox=1596;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=39 GT:AD:DP:GQ:PL:SB 1/2:0,22,17,0:39:99:1596,696,718,905,0,855,1606,745,912,1647:0,0,18,21 +chrX 4705179 . A . . END=4705705 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,114,1574 +chrX 4705706 . T TTAGA, 2308.03 . AS_QUALapprox=|2322|0;AS_VarDP=0|53|0;DP=59;QUALapprox=2322;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:2322,159,0,2323,160,2323:0,0,33,20 +chrX 4705707 . T . . END=4708871 GT:DP:GQ:MIN_DP:PL 0/0:53:47:53:0,47,918 +chrX 4708872 . A T, 1758.06 . AS_QUALapprox=|1772|0;AS_VarDP=0|54|0;DP=57;QUALapprox=1772;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:1772,162,0,1772,162,1772:0,0,32,22 +chrX 4708873 . T . . END=4709689 GT:DP:GQ:MIN_DP:PL 0/0:55:94:55:0,94,1405 +chrX 4709690 . T A, 2354.06 . AS_QUALapprox=|2368|0;AS_VarDP=0|75|0;DP=81;QUALapprox=2368;RAW_GT_COUNT=0,0,1;RAW_MQandDP=291600,81;VarDP=75 GT:AD:DP:GQ:PL:SB 1/1:0,75,0:75:99:2368,224,0,2368,224,2368:0,0,32,43 +chrX 4709691 . A . . END=4709723 GT:DP:GQ:MIN_DP:PL 0/0:73:99:73:0,120,1800 +chrX 4709724 . T C, 2257.06 . AS_QUALapprox=|2271|0;AS_VarDP=0|75|0;DP=79;QUALapprox=2271;RAW_GT_COUNT=0,0,1;RAW_MQandDP=284400,79;VarDP=75 GT:AD:DP:GQ:PL:SB 1/1:0,75,0:75:99:2271,224,0,2271,224,2271:0,0,31,44 +chrX 4709725 . G . . END=4709780 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 4709781 . G A, 1707.06 . AS_QUALapprox=|1721|0;AS_VarDP=0|51|0;DP=52;QUALapprox=1721;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1721,153,0,1721,153,1721:0,0,23,28 +chrX 4709782 . T . . END=4709869 GT:DP:GQ:MIN_DP:PL 0/0:52:76:52:0,76,1253 +chrX 4709870 . T . . END=4709870 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,1130 +chrX 4709871 . A . . END=4709877 GT:DP:GQ:MIN_DP:PL 0/0:46:24:45:0,24,1088 +chrX 4709878 . C A,CA, 335.60 . AS_QUALapprox=|0|343|0;AS_VarDP=10|3|22|0;BaseQRankSum=-1.799;DP=41;MQRankSum=-0.569;QUALapprox=343;RAW_GT_COUNT=0,1,0;RAW_MQandDP=145600,41;ReadPosRankSum=-0.584;VarDP=35 GT:AD:DP:GQ:PL:SB 0/2:10,3,22,0:35:99:343,380,968,0,188,144,417,812,233,798:7,3,14,11 +chrX 4709879 . A . . END=4710416 GT:DP:GQ:MIN_DP:PL 0/0:51:50:51:0,50,1379 +chrX 4710417 . C T, 1963.06 . AS_QUALapprox=|1977|0;AS_VarDP=0|61|0;DP=61;QUALapprox=1977;RAW_GT_COUNT=0,0,1;RAW_MQandDP=219600,61;VarDP=61 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:1977,183,0,1977,183,1977:0,0,34,27 +chrX 4710418 . T . . END=4710655 GT:DP:GQ:MIN_DP:PL 0/0:60:92:60:0,92,1206 +chrX 4710656 . A C, 1102.06 . AS_QUALapprox=|1116|0;AS_VarDP=0|35|0;DP=37;QUALapprox=1116;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133200,37;VarDP=35 GT:AD:DP:GQ:PL:SB 1/1:0,35,0:35:99:1116,104,0,1116,104,1116:0,0,16,19 +chrX 4710657 . A . . END=4710874 GT:DP:GQ:MIN_DP:PL 0/0:43:76:43:0,76,1096 +chrX 4710875 . C T, 1166.06 . AS_QUALapprox=|1180|0;AS_VarDP=0|39|0;DP=40;QUALapprox=1180;RAW_GT_COUNT=0,0,1;RAW_MQandDP=144000,40;VarDP=39 GT:AD:DP:GQ:PL:SB 1/1:0,39,0:39:99:1180,117,0,1180,117,1180:0,0,23,16 +chrX 4710876 . G . . END=4712328 GT:DP:GQ:MIN_DP:PL 0/0:61:54:61:0,54,1002 +chrX 4712329 . G C, 378.64 . AS_QUALapprox=|386|0;AS_VarDP=35|17|0;BaseQRankSum=0.932;DP=55;MQRankSum=0.000;QUALapprox=386;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-2.800;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:35,17,0:52:99:386,0,956,490,1007,1497:21,14,9,8 +chrX 4712330 . A . . END=4712719 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,117,1755 +chrX 4712720 . C T, 1753.06 . AS_QUALapprox=|1767|0;AS_VarDP=0|52|0;DP=52;QUALapprox=1767;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1767,156,0,1767,156,1767:0,0,25,27 +chrX 4712721 . T . . END=4713048 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,104,1497 +chrX 4713049 . TAAAC T, 1000.60 . AS_QUALapprox=|1008|0;AS_VarDP=26|27|0;BaseQRankSum=0.745;DP=58;MQRankSum=0.000;QUALapprox=1008;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=1.383;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:26,27,0:53:99:1008,0,987,1086,1068,2154:17,9,12,15 +chrX 4713054 . A . . END=4713059 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 4713060 . TA T, 2050.03 . AS_QUALapprox=|2064|0;AS_VarDP=0|57|0;DP=58;QUALapprox=2064;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:2064,171,0,2064,171,2064:0,0,32,25 +chrX 4713062 . A . . END=4713123 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,117,1538 +chrX 4713124 . A T, 1732.06 . AS_QUALapprox=|1746|0;AS_VarDP=0|54|0;DP=56;QUALapprox=1746;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:1746,162,0,1746,162,1746:0,0,29,25 +chrX 4713125 . T . . END=4713212 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,117,1568 +chrX 4713213 . C T, 1768.06 . AS_QUALapprox=|1782|0;AS_VarDP=0|54|0;DP=55;QUALapprox=1782;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:1782,162,0,1782,162,1782:0,0,22,32 +chrX 4713214 . T . . END=4713254 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 4713255 . A C, 1625.06 . AS_QUALapprox=|1639|0;AS_VarDP=2|49|0;BaseQRankSum=4.518;DP=54;MQRankSum=0.000;QUALapprox=1639;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;ReadPosRankSum=0.291;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:2,49,0:51:99:1639,119,0,1644,147,1673:0,2,25,24 +chrX 4713256 . A . . END=4713333 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,105,1321 +chrX 4713334 . T TA, 353.60 . AS_QUALapprox=|361|0;AS_VarDP=16|24|0;BaseQRankSum=-1.255;DP=59;MQRankSum=0.000;QUALapprox=361;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-0.871;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:16,24,0:40:99:361,0,231,409,302,711:11,5,14,10 +chrX 4713335 . A . . END=4713497 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,114,1755 +chrX 4713498 . GTT G, 1806.03 . AS_QUALapprox=|1820|0;AS_VarDP=0|47|0;DP=56;QUALapprox=1820;RAW_GT_COUNT=0,0,1;RAW_MQandDP=201600,56;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1820,141,0,1820,141,1820:0,0,18,29 +chrX 4713501 . T . . END=4713505 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 4713506 . T . . END=4713506 GT:DP:GQ:MIN_DP:PL 0/0:53:0:53:0,0,1384 +chrX 4713507 . T . . END=4713865 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,107,1504 +chrX 4713866 . G A, 1489.06 . AS_QUALapprox=|1503|0;AS_VarDP=0|47|0;DP=47;QUALapprox=1503;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1503,140,0,1503,140,1503:0,0,24,23 +chrX 4713867 . T . . END=4714031 GT:DP:GQ:MIN_DP:PL 0/0:49:83:49:0,83,1320 +chrX 4714032 . T G, 1739.06 . AS_QUALapprox=|1753|0;AS_VarDP=0|57|0;DP=57;QUALapprox=1753;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1753,169,0,1753,169,1753:0,0,29,28 +chrX 4714033 . T . . END=4714046 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 4714047 . AAACTCC A, 2281.03 . AS_QUALapprox=|2295|0;AS_VarDP=0|51|0;DP=52;QUALapprox=2295;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:2295,154,0,2295,154,2295:0,0,25,26 +chrX 4714054 . A . . END=4714330 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,119,1529 +chrX 4714331 . A G, 1703.06 . AS_QUALapprox=|1717|0;AS_VarDP=0|52|0;DP=52;QUALapprox=1717;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1717,155,0,1717,155,1717:0,0,28,24 +chrX 4714332 . G . . END=4714519 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,108,1620 +chrX 4714520 . T C, 1383.06 . AS_QUALapprox=|1397|0;AS_VarDP=0|42|0;DP=45;QUALapprox=1397;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162000,45;VarDP=42 GT:AD:DP:GQ:PL:SB 1/1:0,42,0:42:99:1397,126,0,1397,126,1397:0,0,26,16 +chrX 4714521 . G . . END=4715165 GT:DP:GQ:MIN_DP:PL 0/0:50:70:50:0,70,1127 +chrX 4715166 . G T, 1668.06 . AS_QUALapprox=|1682|0;AS_VarDP=0|50|0;DP=51;QUALapprox=1682;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1682,150,0,1682,150,1682:0,0,28,22 +chrX 4715167 . T . . END=4715280 GT:DP:GQ:MIN_DP:PL 0/0:32:39:29:0,39,585 +chrX 4715281 . C T, 1200.06 . AS_QUALapprox=|1214|0;AS_VarDP=0|31|0;DP=38;QUALapprox=1214;RAW_GT_COUNT=0,0,1;RAW_MQandDP=127058,38;VarDP=31 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,31,0:31:93:0|1:4715281_C_T:1214,93,0,1214,93,1214:4715281:0,0,16,15 +chrX 4715282 . T . . END=4715295 GT:DP:GQ:MIN_DP:PL 0/0:29:54:29:0,54,810 +chrX 4715296 . C CCTCTCTCT, 1491.03 . AS_QUALapprox=|1505|0;AS_VarDP=0|37|0;DP=45;QUALapprox=1505;RAW_GT_COUNT=0,0,1;RAW_MQandDP=151049,45;VarDP=37 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,37,0:37:99:0|1:4715281_C_T:1505,111,0,1505,111,1505:4715281:0,0,14,23 +chrX 4715297 . C . . END=4715314 GT:DP:GQ:MIN_DP:PL 0/0:39:75:39:0,75,1125 +chrX 4715315 . T . . END=4715315 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,824 +chrX 4715316 . T . . END=4715318 GT:DP:GQ:MIN_DP:PL 0/0:39:90:39:0,90,1350 +chrX 4715319 . T . . END=4715319 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,1017 +chrX 4715320 . T . . END=4715593 GT:DP:GQ:MIN_DP:PL 0/0:51:63:51:0,63,982 +chrX 4715594 . C G, 1688.06 . AS_QUALapprox=|1702|0;AS_VarDP=0|52|0;DP=53;QUALapprox=1702;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:1702,156,0,1702,156,1702:0,0,29,23 +chrX 4715595 . A . . END=4715672 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 4715673 . G T, 1871.06 . AS_QUALapprox=|1885|0;AS_VarDP=0|59|0;DP=60;QUALapprox=1885;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1885,177,0,1885,177,1885:0,0,24,35 +chrX 4715674 . G . . END=4715972 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,101,1330 +chrX 4715973 . T C, 1941.06 . AS_QUALapprox=|1955|0;AS_VarDP=0|60|0;DP=60;QUALapprox=1955;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,60,0:60:99:1955,180,0,1955,180,1955:0,0,35,25 +chrX 4715974 . T . . END=4716078 GT:DP:GQ:MIN_DP:PL 0/0:52:93:52:0,93,1379 +chrX 4716079 . T C, 1111.06 . AS_QUALapprox=|1125|0;AS_VarDP=0|33|0;DP=36;QUALapprox=1125;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129600,36;VarDP=33 GT:AD:DP:GQ:PL:SB 1/1:0,33,0:33:99:1125,99,0,1125,99,1125:0,0,21,12 +chrX 4716080 . C . . END=4716559 GT:DP:GQ:MIN_DP:PL 0/0:61:53:61:0,53,923 +chrX 4716560 . T C, 1882.06 . AS_QUALapprox=|1896|0;AS_VarDP=0|58|0;DP=63;QUALapprox=1896;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;VarDP=58 GT:AD:DP:GQ:PL:SB 1/1:0,58,0:58:99:1896,174,0,1896,174,1896:0,0,23,35 +chrX 4716561 . G . . END=4716876 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,101,1458 +chrX 4716877 . CT C, 1023.03 . AS_QUALapprox=|1037|0;AS_VarDP=1|41|0;BaseQRankSum=-0.383;DP=54;MQRankSum=0.000;QUALapprox=1037;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;ReadPosRankSum=0.619;VarDP=42 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:1,41,0:42:99:0|1:4716877_CT_C:1037,101,0,1040,123,1062:4716877:0,1,22,19 +chrX 4716879 . T . . END=4716892 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1549 +chrX 4716893 . T A, 1988.06 . AS_QUALapprox=|2002|0;AS_VarDP=0|47|0;DP=50;QUALapprox=2002;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,47,0:47:99:0|1:4716877_CT_C:2002,141,0,2002,141,2002:4716877:0,0,22,25 +chrX 4716894 . A . . END=4717278 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,100,1573 +chrX 4717279 . T A, 1933.06 . AS_QUALapprox=|1947|0;AS_VarDP=0|59|0;DP=60;QUALapprox=1947;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1947,177,0,1947,177,1947:0,0,33,26 +chrX 4717280 . T . . END=4717869 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,103,1271 +chrX 4717870 . C T, 1619.06 . AS_QUALapprox=|1633|0;AS_VarDP=0|49|0;DP=49;QUALapprox=1633;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1633,147,0,1633,147,1633:0,0,23,26 +chrX 4717871 . G . . END=4717966 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 4717967 . A G, 1900.06 . AS_QUALapprox=|1914|0;AS_VarDP=0|61|0;DP=62;QUALapprox=1914;RAW_GT_COUNT=0,0,1;RAW_MQandDP=223200,62;VarDP=61 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:1914,182,0,1914,182,1914:0,0,37,24 +chrX 4717968 . T . . END=4718500 GT:DP:GQ:MIN_DP:PL 0/0:60:93:60:0,93,1499 +chrX 4718501 . C A, 1569.06 . AS_QUALapprox=|1583|0;AS_VarDP=0|48|0;DP=49;QUALapprox=1583;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=48 GT:AD:DP:GQ:PL:SB 1/1:0,48,0:48:99:1583,144,0,1583,144,1583:0,0,20,28 +chrX 4718502 . C . . END=4719007 GT:DP:GQ:MIN_DP:PL 0/0:49:71:49:0,71,931 +chrX 4719008 . C G, 1428.06 . AS_QUALapprox=|1442|0;AS_VarDP=0|49|0;DP=50;QUALapprox=1442;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1442,145,0,1442,145,1442:0,0,24,25 +chrX 4719009 . C . . END=4719204 GT:DP:GQ:MIN_DP:PL 0/0:47:27:44:0,27,1129 +chrX 4719205 . CT C, 438.69 . AS_QUALapprox=|446|0;AS_VarDP=5|24|0;BaseQRankSum=0.556;DP=50;MQRankSum=-0.591;QUALapprox=446;RAW_GT_COUNT=0,1,0;RAW_MQandDP=171979,50;ReadPosRankSum=-1.184;VarDP=29 GT:AD:DP:GQ:PL:SB 0/1:5,24,0:29:7:446,0,7,460,78,538:4,1,12,12 +chrX 4719207 . T . . END=4719223 GT:DP:GQ:MIN_DP:PL 0/0:47:90:47:0,90,1350 +chrX 4719224 . G . . END=4719224 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,905 +chrX 4719225 . A . . END=4719320 GT:DP:GQ:MIN_DP:PL 0/0:41:76:41:0,76,1082 +chrX 4719321 . G A, 1286.06 . AS_QUALapprox=|1300|0;AS_VarDP=0|40|0;DP=42;QUALapprox=1300;RAW_GT_COUNT=0,0,1;RAW_MQandDP=144552,42;VarDP=40 GT:AD:DP:GQ:PL:SB 1/1:0,40,0:40:99:1300,120,0,1300,120,1300:0,0,20,20 +chrX 4719322 . C . . END=4719508 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,108,1259 +chrX 4719509 . CT C, 1143.03 . AS_QUALapprox=|1157|0;AS_VarDP=0|40|0;DP=53;QUALapprox=1157;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190009,53;VarDP=40 GT:AD:DP:GQ:PL:SB 1/1:0,40,0:40:99:1157,120,0,1157,120,1157:0,0,18,22 +chrX 4719511 . T . . END=4719663 GT:DP:GQ:MIN_DP:PL 0/0:58:83:58:0,83,1330 +chrX 4719664 . A G, 1887.06 . AS_QUALapprox=|1901|0;AS_VarDP=0|58|0;DP=58;QUALapprox=1901;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=58 GT:AD:DP:GQ:PL:SB 1/1:0,58,0:58:99:1901,174,0,1901,174,1901:0,0,35,23 +chrX 4719665 . C . . END=4720208 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,109,1539 +chrX 4720209 . T A, 1969.06 . AS_QUALapprox=|1983|0;AS_VarDP=0|62|0;DP=64;QUALapprox=1983;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230400,64;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:0,62,0:62:99:1983,185,0,1983,185,1983:0,0,30,32 +chrX 4720210 . T . . END=4720730 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 4720731 . A G, 580.64 . AS_QUALapprox=|588|0;AS_VarDP=23|24|0;BaseQRankSum=-2.314;DP=50;MQRankSum=0.000;QUALapprox=588;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=2.183;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:23,24,0:47:99:588,0,639,657,710,1368:14,9,12,12 +chrX 4720732 . T . . END=4721454 GT:DP:GQ:MIN_DP:PL 0/0:51:60:51:0,60,958 +chrX 4721455 . T C, 1889.06 . AS_QUALapprox=|1903|0;AS_VarDP=0|59|0;DP=59;QUALapprox=1903;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1903,176,0,1903,176,1903:0,0,27,32 +chrX 4721456 . C . . END=4721615 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,113,1600 +chrX 4721616 . A ATG, 371.60 . AS_QUALapprox=|379|0;AS_VarDP=22|21|0;BaseQRankSum=-1.882;DP=63;MQRankSum=0.000;QUALapprox=379;RAW_GT_COUNT=0,1,0;RAW_MQandDP=224800,63;ReadPosRankSum=-1.604;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:22,21,0:43:99:379,0,790,447,852,1299:14,8,12,9 +chrX 4721617 . T . . END=4721619 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 4721620 . GTGTGTGTGTGTA G, 699.60 . AS_QUALapprox=|707|0;AS_VarDP=31|19|0;BaseQRankSum=1.844;DP=65;MQRankSum=0.824;QUALapprox=707;RAW_GT_COUNT=0,1,0;RAW_MQandDP=232000,65;ReadPosRankSum=1.020;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:31,19,0:50:99:0|1:4721620_GTGTGTGTGTGTA_G:707,0,1240,800,1299,2099:4721620:18,13,12,7 +chrX 4721632 . A *,G, 1217.03 . AS_QUALapprox=|0|1552|0;AS_VarDP=0|19|31|0;DP=59;QUALapprox=2258;RAW_GT_COUNT=0,0,1;RAW_MQandDP=210400,59;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 2|1:0,19,31,0:50:99:1|0:4721620_GTGTGTGTGTGTA_G:2258,1227,1241,826,0,706,2162,1282,825,2178:4721620:0,0,30,20 +chrX 4721633 . T . . END=4722052 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,111,1508 +chrX 4722053 . A . . END=4722053 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1266 +chrX 4722054 . T . . END=4722093 GT:DP:GQ:MIN_DP:PL 0/0:47:26:45:0,26,1125 +chrX 4722094 . C . . END=4722094 GT:DP:GQ:MIN_DP:PL 0/0:50:11:50:0,11,1430 +chrX 4722095 . C CTT, 563.03 . AS_QUALapprox=|577|0;AS_VarDP=0|25|0;DP=50;QUALapprox=577;RAW_GT_COUNT=0,0,1;RAW_MQandDP=171610,50;VarDP=25 GT:AD:DP:GQ:PL:SB 1/1:0,25,0:25:74:577,74,0,577,74,577:0,0,15,10 +chrX 4722096 . T . . END=4722123 GT:DP:GQ:MIN_DP:PL 0/0:51:42:51:0,42,630 +chrX 4722124 . G . . END=4722124 GT:DP:GQ:MIN_DP:PL 0/0:43:0:43:0,0,422 +chrX 4722125 . T . . END=4722125 GT:DP:GQ:MIN_DP:PL 0/0:52:96:52:0,96,1440 +chrX 4722126 . G . . END=4722127 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,626 +chrX 4722128 . A . . END=4723974 GT:DP:GQ:MIN_DP:PL 0/0:58:64:58:0,64,1017 +chrX 4723975 . T C, 1409.06 . AS_QUALapprox=|1423|0;AS_VarDP=0|44|0;DP=44;QUALapprox=1423;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158400,44;VarDP=44 GT:AD:DP:GQ:PL:SB 1/1:0,44,0:44:99:1423,132,0,1423,132,1423:0,0,15,29 +chrX 4723976 . C . . END=4724378 GT:DP:GQ:MIN_DP:PL 0/0:38:43:35:0,43,834 +chrX 4724379 . A AC,C, 1042.03 . AS_QUALapprox=|1056|209|0;AS_VarDP=0|33|4|0;DP=40;QUALapprox=1056;RAW_GT_COUNT=0,0,1;RAW_MQandDP=144000,40;VarDP=37 GT:AD:DP:GQ:PL:SB 1/1:0,33,4,0:37:43:1056,114,0,847,43,926,1003,116,905,1025:0,0,24,13 +chrX 4724380 . C . . END=4724388 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,99,1485 +chrX 4724389 . A . . END=4724389 GT:DP:GQ:MIN_DP:PL 0/0:46:0:46:0,0,1201 +chrX 4724390 . A . . END=4724976 GT:DP:GQ:MIN_DP:PL 0/0:65:87:65:0,87,1177 +chrX 4724977 . T C, 2570.06 . AS_QUALapprox=|2584|0;AS_VarDP=0|81|0;DP=84;QUALapprox=2584;RAW_GT_COUNT=0,0,1;RAW_MQandDP=302400,84;VarDP=81 GT:AD:DP:GQ:PL:SB 1/1:0,81,0:81:99:2584,243,0,2584,243,2584:0,0,42,39 +chrX 4724978 . A . . END=4725059 GT:DP:GQ:MIN_DP:PL 0/0:75:99:75:0,120,1800 +chrX 4725060 . A G, 2233.06 . AS_QUALapprox=|2247|0;AS_VarDP=0|72|0;DP=75;QUALapprox=2247;RAW_GT_COUNT=0,0,1;RAW_MQandDP=270000,75;VarDP=72 GT:AD:DP:GQ:PL:SB 1/1:0,72,0:72:99:2247,216,0,2247,216,2247:0,0,34,38 +chrX 4725061 . T . . END=4725102 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 4725103 . A G, 1869.06 . AS_QUALapprox=|1883|0;AS_VarDP=0|62|0;DP=69;QUALapprox=1883;RAW_GT_COUNT=0,0,1;RAW_MQandDP=246736,69;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:0,62,0:62:99:1883,184,0,1883,184,1883:0,0,31,31 +chrX 4725104 . C . . END=4725262 GT:DP:GQ:MIN_DP:PL 0/0:50:86:50:0,86,1210 +chrX 4725263 . A G, 1321.06 . AS_QUALapprox=|1335|0;AS_VarDP=0|40|0;DP=40;QUALapprox=1335;RAW_GT_COUNT=0,0,1;RAW_MQandDP=144000,40;VarDP=40 GT:AD:DP:GQ:PL:SB 1/1:0,40,0:40:99:1335,120,0,1335,120,1335:0,0,14,26 +chrX 4725264 . T . . END=4725679 GT:DP:GQ:MIN_DP:PL 0/0:55:90:55:0,90,1494 +chrX 4725680 . T C, 1975.06 . AS_QUALapprox=|1989|0;AS_VarDP=1|64|0;BaseQRankSum=-0.557;DP=65;MQRankSum=0.000;QUALapprox=1989;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;ReadPosRankSum=-0.053;VarDP=65 GT:AD:DP:GQ:PL:SB 1/1:1,64,0:65:99:1989,160,0,1992,191,2024:1,0,35,29 +chrX 4725681 . G . . END=4729238 GT:DP:GQ:MIN_DP:PL 0/0:57:43:57:0,43,1173 +chrX 4729239 . C T, 1564.06 . AS_QUALapprox=|1578|0;AS_VarDP=0|49|0;DP=53;QUALapprox=1578;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1578,147,0,1578,147,1578:0,0,28,21 +chrX 4729240 . A . . END=4729407 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 4729408 . C G, 1893.06 . AS_QUALapprox=|1907|0;AS_VarDP=0|63|0;DP=66;QUALapprox=1907;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;VarDP=63 GT:AD:DP:GQ:PL:SB 1/1:0,63,0:63:99:1907,187,0,1907,187,1907:0,0,30,33 +chrX 4729409 . A . . END=4729920 GT:DP:GQ:MIN_DP:PL 0/0:54:97:54:0,97,1528 +chrX 4729921 . G T, 1647.06 . AS_QUALapprox=|1661|0;AS_VarDP=0|51|0;DP=53;QUALapprox=1661;RAW_GT_COUNT=0,0,1;RAW_MQandDP=190800,53;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,51,0:51:99:1661,152,0,1661,152,1661:0,0,25,26 +chrX 4729922 . C . . END=4730136 GT:DP:GQ:MIN_DP:PL 0/0:70:99:70:0,120,1800 +chrX 4730137 . G C, 2055.06 . AS_QUALapprox=|2069|0;AS_VarDP=1|65|0;BaseQRankSum=-0.481;DP=66;MQRankSum=0.000;QUALapprox=2069;RAW_GT_COUNT=0,0,1;RAW_MQandDP=237600,66;ReadPosRankSum=-0.788;VarDP=66 GT:AD:DP:GQ:PL:SB 1/1:1,65,0:66:99:2069,163,0,2072,195,2104:0,1,33,32 +chrX 4730138 . A . . END=4730371 GT:DP:GQ:MIN_DP:PL 0/0:58:90:58:0,90,1476 +chrX 4730372 . C CT, 249.60 . AS_QUALapprox=|257|0;AS_VarDP=16|16|0;BaseQRankSum=0.298;DP=50;MQRankSum=0.000;QUALapprox=257;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=0.471;VarDP=32 GT:AD:DP:GQ:PL:SB 0/1:16,16,0:32:99:257,0,229,303,277,580:7,9,9,7 +chrX 4730373 . T . . END=4730389 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,114,1710 +chrX 4730390 . C . . END=4730390 GT:DP:GQ:MIN_DP:PL 0/0:52:0:52:0,0,1318 +chrX 4730391 . A . . END=4731011 GT:DP:GQ:MIN_DP:PL 0/0:55:62:55:0,62,1281 +chrX 4731012 . T G, 1530.06 . AS_QUALapprox=|1544|0;AS_VarDP=0|45|0;DP=47;QUALapprox=1544;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;VarDP=45 GT:AD:DP:GQ:PL:SB 1/1:0,45,0:45:99:1544,135,0,1544,135,1544:0,0,19,26 +chrX 4731013 . C . . END=4731528 GT:DP:GQ:MIN_DP:PL 0/0:33:39:32:0,39,897 +chrX 4731529 . G . . END=4731529 GT:DP:GQ:MIN_DP:PL 0/0:26:4:26:0,4,675 +chrX 4731530 . A . . END=4731721 GT:DP:GQ:MIN_DP:PL 0/0:38:46:38:0,46,695 +chrX 4731722 . A G, 1079.06 . AS_QUALapprox=|1093|0;AS_VarDP=0|36|0;DP=36;QUALapprox=1093;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129600,36;VarDP=36 GT:AD:DP:GQ:PL:SB 1/1:0,36,0:36:99:1093,106,0,1093,106,1093:0,0,22,14 +chrX 4731723 . T . . END=4731808 GT:DP:GQ:MIN_DP:PL 0/0:41:91:41:0,91,1091 +chrX 4731809 . T TAC, 580.60 . AS_QUALapprox=|588|0;AS_VarDP=14|21|0;BaseQRankSum=-0.777;DP=46;MQRankSum=0.000;QUALapprox=588;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162529,46;ReadPosRankSum=0.775;VarDP=35 GT:AD:DP:GQ:PL:SB 0/1:14,21,0:35:99:588,0,365,630,429,1059:8,6,15,6 +chrX 4731810 . A . . END=4732738 GT:DP:GQ:MIN_DP:PL 0/0:50:70:50:0,70,1149 +chrX 4732739 . TTA T, 1708.03 . AS_QUALapprox=|1722|0;AS_VarDP=0|42|0;DP=44;QUALapprox=1722;RAW_GT_COUNT=0,0,1;RAW_MQandDP=158400,44;VarDP=42 GT:AD:DP:GQ:PL:SB 1/1:0,42,0:42:99:1722,126,0,1722,126,1722:0,0,21,21 +chrX 4732742 . T . . END=4732984 GT:DP:GQ:MIN_DP:PL 0/0:51:72:51:0,72,1206 +chrX 4732985 . A G, 1550.06 . AS_QUALapprox=|1564|0;AS_VarDP=0|47|0;DP=50;QUALapprox=1564;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1564,141,0,1564,141,1564:0,0,18,29 +chrX 4732986 . T . . END=4733109 GT:DP:GQ:MIN_DP:PL 0/0:42:67:42:0,67,1072 +chrX 4733110 . G A, 1206.06 . AS_QUALapprox=|1220|0;AS_VarDP=0|36|0;DP=38;QUALapprox=1220;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;VarDP=36 GT:AD:DP:GQ:PL:SB 1/1:0,36,0:36:99:1220,108,0,1220,108,1220:0,0,13,23 +chrX 4733111 . G . . END=4733582 GT:DP:GQ:MIN_DP:PL 0/0:44:73:44:0,73,1111 +chrX 4733583 . A G, 689.64 . AS_QUALapprox=|697|0;AS_VarDP=14|25|0;BaseQRankSum=-0.782;DP=39;MQRankSum=0.000;QUALapprox=697;RAW_GT_COUNT=0,1,0;RAW_MQandDP=140400,39;ReadPosRankSum=0.249;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:14,25,0:39:99:697,0,360,739,435,1173:7,7,13,12 +chrX 4733584 . C . . END=4734460 GT:DP:GQ:MIN_DP:PL 0/0:54:54:54:0,54,1027 +chrX 4734461 . ATGTGTGTGTGTGTGTG A,ATG, 1890.03 . AS_QUALapprox=|1904|667|0;AS_VarDP=0|42|3|0;DP=59;QUALapprox=1904;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=45 GT:AD:DP:GQ:PL:SB 1/1:0,42,3,0:45:41:1904,137,0,1362,41,1237,1712,134,1334,1618:0,0,25,20 +chrX 4734478 . T . . END=4734568 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,120,1800 +chrX 4734569 . T A, 665.64 . AS_QUALapprox=|673|0;AS_VarDP=29|25|0;BaseQRankSum=-0.622;DP=55;MQRankSum=0.000;QUALapprox=673;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=1.189;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:29,25,0:54:99:673,0,815,760,890,1650:15,14,12,13 +chrX 4734570 . A . . END=4734834 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 4734835 . G A, 1848.06 . AS_QUALapprox=|1862|0;AS_VarDP=0|55|0;DP=55;QUALapprox=1862;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1862,165,0,1862,165,1862:0,0,29,26 +chrX 4734836 . A . . END=4735143 GT:DP:GQ:MIN_DP:PL 0/0:54:89:54:0,89,1394 +chrX 4735144 . A G, 1944.06 . AS_QUALapprox=|1958|0;AS_VarDP=0|59|0;DP=60;QUALapprox=1958;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1958,177,0,1958,177,1958:0,0,22,37 +chrX 4735145 . C . . END=4736236 GT:DP:GQ:MIN_DP:PL 0/0:46:39:33:0,39,919 +chrX 4736237 . G A, 1646.06 . AS_QUALapprox=|1660|0;AS_VarDP=0|53|0;DP=54;QUALapprox=1660;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1660,158,0,1660,158,1660:0,0,26,27 +chrX 4736238 . C . . END=4737624 GT:DP:GQ:MIN_DP:PL 0/0:46:35:35:0,35,945 +chrX 4737625 . T . . END=4737625 GT:DP:GQ:MIN_DP:PL 0/0:35:1:35:0,1,917 +chrX 4737626 . CAA C, 313.71 . AS_QUALapprox=|321|0;AS_VarDP=3|15|0;DP=43;MQRankSum=-0.543;QUALapprox=321;RAW_GT_COUNT=0,1,0;RAW_MQandDP=144388,43;VarDP=18 GT:AD:DP:GQ:PL:SB 0/1:3,15,0:18:6:321,0,6,330,49,379:0,3,11,4 +chrX 4737629 . A . . END=4737686 GT:DP:GQ:MIN_DP:PL 0/0:42:72:42:0,72,1080 +chrX 4737687 . G A, 1654.06 . AS_QUALapprox=|1668|0;AS_VarDP=0|49|0;DP=51;QUALapprox=1668;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1668,147,0,1668,147,1668:0,0,33,16 +chrX 4737688 . A . . END=4738975 GT:DP:GQ:MIN_DP:PL 0/0:57:79:57:0,79,1132 +chrX 4738976 . GA G, 1717.03 . AS_QUALapprox=|1731|0;AS_VarDP=0|53|0;DP=54;QUALapprox=1731;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,53,0:53:99:1731,159,0,1731,159,1731:0,0,29,24 +chrX 4738978 . A . . END=4739138 GT:DP:GQ:MIN_DP:PL 0/0:53:58:53:0,58,1519 +chrX 4739139 . GCACA G, 1999.03 . AS_QUALapprox=|2013|0;AS_VarDP=0|45|0;DP=47;QUALapprox=2013;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;VarDP=45 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,45,0:45:99:0|1:4739139_GCACA_G:2013,136,0,2013,136,2013:4739139:0,0,22,23 +chrX 4739144 . C . . END=4739144 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,105,1575 +chrX 4739145 . A G, 1999.06 . AS_QUALapprox=|2013|0;AS_VarDP=0|45|0;DP=45;QUALapprox=2013;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162000,45;VarDP=45 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,45,0:45:99:0|1:4739139_GCACA_G:2013,135,0,2013,135,2013:4739139:0,0,22,23 +chrX 4739146 . C . . END=4739146 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,108,1620 +chrX 4739147 . A G, 1999.06 . AS_QUALapprox=|2013|0;AS_VarDP=0|45|0;DP=47;QUALapprox=2013;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;VarDP=45 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,45,0:45:99:0|1:4739139_GCACA_G:2013,136,0,2013,136,2013:4739139:0,0,22,23 +chrX 4739148 . C . . END=4739818 GT:DP:GQ:MIN_DP:PL 0/0:60:66:60:0,66,990 +chrX 4739819 . T . . END=4739819 GT:DP:GQ:MIN_DP:PL 0/0:31:19:31:0,19,809 +chrX 4739820 . C . . END=4739825 GT:DP:GQ:MIN_DP:PL 0/0:32:61:32:0,61,962 +chrX 4739826 . T . . END=4739826 GT:DP:GQ:MIN_DP:PL 0/0:29:0:29:0,0,612 +chrX 4739827 . C . . END=4739832 GT:DP:GQ:MIN_DP:PL 0/0:30:63:30:0,63,943 +chrX 4739833 . A . . END=4739833 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,584 +chrX 4739834 . C . . END=4739837 GT:DP:GQ:MIN_DP:PL 0/0:29:63:29:0,63,939 +chrX 4739838 . A . . END=4739838 GT:DP:GQ:MIN_DP:PL 0/0:27:0:27:0,0,700 +chrX 4739839 . C . . END=4739843 GT:DP:GQ:MIN_DP:PL 0/0:27:56:27:0,56,808 +chrX 4739844 . G . . END=4739844 GT:DP:GQ:MIN_DP:PL 0/0:26:19:26:0,19,754 +chrX 4739845 . G . . END=4739849 GT:DP:GQ:MIN_DP:PL 0/0:26:67:26:0,67,804 +chrX 4739850 . T C, 805.06 . AS_QUALapprox=|819|0;AS_VarDP=0|25|0;DP=26;QUALapprox=819;RAW_GT_COUNT=0,0,1;RAW_MQandDP=92209,26;VarDP=25 GT:AD:DP:GQ:PL:SB 1/1:0,25,0:25:75:819,75,0,819,75,819:0,0,5,20 +chrX 4739851 . G . . END=4740456 GT:DP:GQ:MIN_DP:PL 0/0:48:46:48:0,46,808 +chrX 4740457 . T C, 1563.06 . AS_QUALapprox=|1577|0;AS_VarDP=0|50|0;DP=50;QUALapprox=1577;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1577,149,0,1577,149,1577:0,0,24,26 +chrX 4740458 . G . . END=4741819 GT:DP:GQ:MIN_DP:PL 0/0:54:89:54:0,89,1240 +chrX 4741820 . G A, 1946.06 . AS_QUALapprox=|1960|0;AS_VarDP=0|59|0;DP=60;QUALapprox=1960;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1960,177,0,1960,177,1960:0,0,29,30 +chrX 4741821 . C . . END=4742224 GT:DP:GQ:MIN_DP:PL 0/0:56:50:56:0,50,1439 +chrX 4742225 . G C, 1122.06 . AS_QUALapprox=|1136|0;AS_VarDP=0|34|0;DP=40;QUALapprox=1136;RAW_GT_COUNT=0,0,1;RAW_MQandDP=140000,40;VarDP=34 GT:AD:DP:GQ:PL:SB 1/1:0,34,0:34:99:1136,102,0,1136,102,1136:0,0,15,19 +chrX 4742226 . T . . END=4742231 GT:DP:GQ:MIN_DP:PL 0/0:34:72:34:0,72,1080 +chrX 4742232 . C CT, 301.03 . AS_QUALapprox=|315|0;AS_VarDP=0|18|0;DP=35;QUALapprox=315;RAW_GT_COUNT=0,0,1;RAW_MQandDP=120000,35;VarDP=18 GT:AD:DP:GQ:PL:SB 1/1:0,18,0:18:52:315,52,0,315,52,315:0,0,13,5 +chrX 4742233 . T . . END=4742255 GT:DP:GQ:MIN_DP:PL 0/0:49:54:49:0,54,810 +chrX 4742256 . G . . END=4742259 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,84 +chrX 4742260 . T . . END=4742260 GT:DP:GQ:MIN_DP:PL 0/0:30:30:30:0,30,843 +chrX 4742261 . G . . END=4742261 GT:DP:GQ:MIN_DP:PL 0/0:31:19:31:0,19,818 +chrX 4742262 . G . . END=4742264 GT:DP:GQ:MIN_DP:PL 0/0:31:44:31:0,44,809 +chrX 4742265 . T . . END=4742265 GT:DP:GQ:MIN_DP:PL 0/0:32:2:32:0,2,843 +chrX 4742266 . T . . END=4742268 GT:DP:GQ:MIN_DP:PL 0/0:34:29:33:0,29,967 +chrX 4742269 . G . . END=4742269 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,726 +chrX 4742270 . C . . END=4742428 GT:DP:GQ:MIN_DP:PL 0/0:37:20:30:0,20,786 +chrX 4742429 . A G, 1458.06 . AS_QUALapprox=|1472|0;AS_VarDP=0|45|0;DP=49;QUALapprox=1472;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=45 GT:AD:DP:GQ:PL:SB 1/1:0,45,0:45:99:1472,134,0,1472,134,1472:0,0,21,24 +chrX 4742430 . G . . END=4742980 GT:DP:GQ:MIN_DP:PL 0/0:53:83:53:0,83,1325 +chrX 4742981 . A ATG, 579.60 . AS_QUALapprox=|587|0;AS_VarDP=19|24|0;BaseQRankSum=1.562;DP=51;MQRankSum=0.000;QUALapprox=587;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-0.648;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:19,24,0:43:99:587,0,453,644,524,1168:7,12,14,10 +chrX 4742982 . T . . END=4745816 GT:DP:GQ:MIN_DP:PL 0/0:50:53:50:0,53,1023 +chrX 4745817 . CA C, 97.60 . AS_QUALapprox=|105|0;AS_VarDP=12|10|0;BaseQRankSum=2.286;DP=49;MQRankSum=0.497;QUALapprox=105;RAW_GT_COUNT=0,1,0;RAW_MQandDP=161965,49;ReadPosRankSum=-1.014;VarDP=22 GT:AD:DP:GQ:PL:SB 0/1:12,10,0:22:99:105,0,153,140,181,321:1,11,10,0 +chrX 4745819 . A . . END=4745862 GT:DP:GQ:MIN_DP:PL 0/0:53:26:45:0,26,1222 +chrX 4745863 . T . . END=4745863 GT:DP:GQ:MIN_DP:PL 0/0:43:16:43:0,16,1118 +chrX 4745864 . G . . END=4746417 GT:DP:GQ:MIN_DP:PL 0/0:60:70:60:0,70,1100 +chrX 4746418 . A T, 1580.06 . AS_QUALapprox=|1594|0;AS_VarDP=0|50|0;DP=52;QUALapprox=1594;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1594,150,0,1594,150,1594:0,0,28,22 +chrX 4746419 . C . . END=4750215 GT:DP:GQ:MIN_DP:PL 0/0:52:62:52:0,62,1067 +chrX 4750216 . ATGTGTG A,ATG,ATGTG, 397.60 . AS_QUALapprox=|22|0|405|0;AS_VarDP=16|0|0|13|0;BaseQRankSum=1.266;DP=54;MQRankSum=0.000;QUALapprox=405;RAW_GT_COUNT=0,1,0;RAW_MQandDP=193504,54;ReadPosRankSum=-1.797;VarDP=29 GT:AD:DP:GQ:PL:SB 0/3:16,0,0,13,0:29:99:405,383,1413,499,1337,1450,0,504,428,412,511,1428,1464,519,1556:7,9,7,6 +chrX 4750223 . T . . END=4750254 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,99,1485 +chrX 4750255 . T A, 884.06 . AS_QUALapprox=|898|0;AS_VarDP=2|22|0;BaseQRankSum=1.909;DP=48;MQRankSum=0.000;QUALapprox=898;RAW_GT_COUNT=0,0,1;RAW_MQandDP=171904,48;ReadPosRankSum=0.418;VarDP=24 GT:AD:DP:GQ:PL:SB 1/1:2,22,0:24:40:898,40,0,903,67,931:2,0,12,10 +chrX 4750256 . G . . END=4750256 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,105,1575 +chrX 4750257 . T A,TGAGA, 1643.06 . AS_QUALapprox=|1657|674|0;AS_VarDP=0|22|1|0;DP=50;QUALapprox=1657;RAW_GT_COUNT=0,0,1;RAW_MQandDP=179104,50;VarDP=23 GT:AD:DP:GQ:PL:SB 1/1:0,22,1,0:23:67:1657,90,0,983,67,1293,1365,130,1181,1491:0,0,13,10 +chrX 4750258 . G . . END=4750302 GT:DP:GQ:MIN_DP:PL 0/0:44:98:44:0,98,1274 +chrX 4750303 . C T, 1363.06 . AS_QUALapprox=|1377|0;AS_VarDP=0|45|0;DP=46;QUALapprox=1377;RAW_GT_COUNT=0,0,1;RAW_MQandDP=164704,46;VarDP=45 GT:AD:DP:GQ:PL:SB 1/1:0,45,0:45:99:1377,133,0,1377,133,1377:0,0,17,28 +chrX 4750304 . C . . END=4751547 GT:DP:GQ:MIN_DP:PL 0/0:57:82:57:0,82,1319 +chrX 4751548 . C G, 2224.06 . AS_QUALapprox=|2238|0;AS_VarDP=0|69|0;DP=70;QUALapprox=2238;RAW_GT_COUNT=0,0,1;RAW_MQandDP=252000,70;VarDP=69 GT:AD:DP:GQ:PL:SB 1/1:0,69,0:69:99:2238,207,0,2238,207,2238:0,0,39,30 +chrX 4751549 . T . . END=4751951 GT:DP:GQ:MIN_DP:PL 0/0:65:95:65:0,95,1281 +chrX 4751952 . G A, 1386.06 . AS_QUALapprox=|1400|0;AS_VarDP=0|42|0;DP=45;QUALapprox=1400;RAW_GT_COUNT=0,0,1;RAW_MQandDP=162000,45;VarDP=42 GT:AD:DP:GQ:PL:SB 1/1:0,42,0:42:99:1400,126,0,1400,126,1400:0,0,14,28 +chrX 4751953 . T . . END=4752398 GT:DP:GQ:MIN_DP:PL 0/0:50:85:50:0,85,1121 +chrX 4752399 . C T,CAT, 1842.03 . AS_QUALapprox=|727|1856|0;AS_VarDP=0|5|40|0;DP=51;QUALapprox=1856;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=45 GT:AD:DP:GQ:PL:SB 2/2:0,5,40,0:45:45:1856,1218,1129,135,45,0,1618,1209,139,1539:0,0,27,18 +chrX 4752400 . A . . END=4752502 GT:DP:GQ:MIN_DP:PL 0/0:51:79:51:0,79,1279 +chrX 4752503 . GA G, 1066.03 . AS_QUALapprox=|1080|0;AS_VarDP=0|35|0;DP=40;QUALapprox=1080;RAW_GT_COUNT=0,0,1;RAW_MQandDP=144000,40;VarDP=35 GT:AD:DP:GQ:PL:SB 1/1:0,35,0:35:99:1080,105,0,1080,105,1080:0,0,16,19 +chrX 4752505 . A . . END=4752670 GT:DP:GQ:MIN_DP:PL 0/0:40:47:40:0,47,1052 +chrX 4752671 . T C, 1613.06 . AS_QUALapprox=|1627|0;AS_VarDP=0|48|0;DP=49;QUALapprox=1627;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=48 GT:AD:DP:GQ:PL:SB 1/1:0,48,0:48:99:1627,144,0,1627,144,1627:0,0,23,25 +chrX 4752672 . A . . END=4754204 GT:DP:GQ:MIN_DP:PL 0/0:51:57:51:0,57,1007 +chrX 4754205 . TATAG T, 1480.03 . AS_QUALapprox=|1494|0;AS_VarDP=0|34|0;DP=36;QUALapprox=1494;RAW_GT_COUNT=0,0,1;RAW_MQandDP=129600,36;VarDP=34 GT:AD:DP:GQ:PL:SB 1/1:0,34,0:34:99:1494,102,0,1494,102,1494:0,0,20,14 +chrX 4754210 . A . . END=4754213 GT:DP:GQ:MIN_DP:PL 0/0:36:90:36:0,90,1350 +chrX 4754214 . A . . END=4754215 GT:DP:GQ:MIN_DP:PL 0/0:36:1:36:0,1,958 +chrX 4754216 . A . . END=4756436 GT:DP:GQ:MIN_DP:PL 0/0:35:33:34:0,33,814 +chrX 4756437 . AC A, 1900.03 . AS_QUALapprox=|1914|0;AS_VarDP=0|49|0;DP=50;QUALapprox=1914;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1914,147,0,1914,147,1914:0,0,24,25 +chrX 4756439 . A . . END=4756858 GT:DP:GQ:MIN_DP:PL 0/0:51:66:51:0,66,1121 +chrX 4756859 . CTTT C, 773.60 . AS_QUALapprox=|781|0;AS_VarDP=13|20|0;BaseQRankSum=0.824;DP=36;MQRankSum=0.000;QUALapprox=781;RAW_GT_COUNT=0,1,0;RAW_MQandDP=129600,36;ReadPosRankSum=-0.295;VarDP=33 GT:AD:DP:GQ:PL:SB 0/1:13,20,0:33:99:781,0,486,820,546,1366:4,9,6,14 +chrX 4756863 . T . . END=4756926 GT:DP:GQ:MIN_DP:PL 0/0:27:31:25:0,31,708 +chrX 4756927 . C CCT, 1041.03 . AS_QUALapprox=|1055|0;AS_VarDP=0|26|0;DP=28;QUALapprox=1055;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=26 GT:AD:DP:GQ:PL:SB 1/1:0,26,0:26:78:1055,78,0,1055,78,1055:0,0,7,19 +chrX 4756928 . C . . END=4756933 GT:DP:GQ:MIN_DP:PL 0/0:42:73:42:0,73,1039 +chrX 4756934 . C . . END=4756934 GT:DP:GQ:MIN_DP:PL 0/0:42:7:42:0,7,1030 +chrX 4756935 . T . . END=4756948 GT:DP:GQ:MIN_DP:PL 0/0:41:27:35:0,27,916 +chrX 4756949 . A . . END=4756949 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,638 +chrX 4756950 . T . . END=4756955 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,102,1530 +chrX 4756956 . C . . END=4756956 GT:DP:GQ:MIN_DP:PL 0/0:38:15:38:0,15,932 +chrX 4756957 . T . . END=4757103 GT:DP:GQ:MIN_DP:PL 0/0:33:44:33:0,44,778 +chrX 4757104 . A G, 639.06 . AS_QUALapprox=|653|0;AS_VarDP=0|24|0;DP=30;QUALapprox=653;RAW_GT_COUNT=0,0,1;RAW_MQandDP=108000,30;VarDP=24 GT:AD:DP:GQ:PL:SB 1/1:0,24,0:24:69:653,69,0,653,69,653:0,0,8,16 +chrX 4757105 . T . . END=4757132 GT:DP:GQ:MIN_DP:PL 0/0:29:66:29:0,66,829 +chrX 4757133 . CTTTCTTTCTTT C, 360.60 . AS_QUALapprox=|368|0;AS_VarDP=16|10|0;BaseQRankSum=0.849;DP=35;MQRankSum=0.000;QUALapprox=368;RAW_GT_COUNT=0,1,0;RAW_MQandDP=126000,35;ReadPosRankSum=0.434;VarDP=26 GT:AD:DP:GQ:PL:SB 0/1:16,10,0:26:99:368,0,624,416,655,1071:7,9,3,7 +chrX 4757145 . T . . END=4757175 GT:DP:GQ:MIN_DP:PL 0/0:30:65:30:0,65,903 +chrX 4757176 . TTTTC T, 552.60 . AS_QUALapprox=|560|0;AS_VarDP=17|16|0;BaseQRankSum=-0.864;DP=37;MQRankSum=0.000;QUALapprox=560;RAW_GT_COUNT=0,1,0;RAW_MQandDP=133200,37;ReadPosRankSum=1.622;VarDP=33 GT:AD:DP:GQ:PL:SB 0/1:17,16,0:33:99:560,0,643,611,691,1302:6,11,8,8 +chrX 4757181 . T . . END=4757183 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,99,1485 +chrX 4757184 . C . . END=4757184 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,1032 +chrX 4757185 . T . . END=4757439 GT:DP:GQ:MIN_DP:PL 0/0:50:55:50:0,55,1122 +chrX 4757440 . C T, 686.64 . AS_QUALapprox=|694|0;AS_VarDP=23|25|0;BaseQRankSum=0.540;DP=49;MQRankSum=0.000;QUALapprox=694;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=-0.372;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:23,25,0:48:99:694,0,615,763,690,1454:15,8,10,15 +chrX 4757441 . G . . END=4757742 GT:DP:GQ:MIN_DP:PL 0/0:58:77:58:0,77,1536 +chrX 4757743 . C T, 666.64 . AS_QUALapprox=|674|0;AS_VarDP=30|25|0;BaseQRankSum=1.088;DP=56;MQRankSum=0.000;QUALapprox=674;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-0.465;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:30,25,0:55:99:674,0,799,764,874,1638:10,20,13,12 +chrX 4757744 . T . . END=4758473 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 4758474 . A G, 2130.06 . AS_QUALapprox=|2144|0;AS_VarDP=1|65|0;BaseQRankSum=-0.325;DP=69;MQRankSum=0.000;QUALapprox=2144;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;ReadPosRankSum=0.525;VarDP=66 GT:AD:DP:GQ:PL:SB 1/1:1,65,0:66:99:2144,164,0,2147,195,2178:1,0,26,39 +chrX 4758475 . T . . END=4759610 GT:DP:GQ:MIN_DP:PL 0/0:52:83:52:0,83,1342 +chrX 4759611 . G A, 567.64 . AS_QUALapprox=|575|0;AS_VarDP=24|21|0;BaseQRankSum=0.376;DP=45;MQRankSum=0.000;QUALapprox=575;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=-1.446;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:24,21,0:45:99:575,0,653,647,716,1363:9,15,8,13 +chrX 4759612 . C . . END=4759956 GT:DP:GQ:MIN_DP:PL 0/0:46:78:46:0,78,1125 +chrX 4759957 . C CT, 418.03 . AS_QUALapprox=|432|0;AS_VarDP=0|22|0;DP=31;QUALapprox=432;RAW_GT_COUNT=0,0,1;RAW_MQandDP=111600,31;VarDP=22 GT:AD:DP:GQ:PL:SB 1/1:0,22,0:22:65:432,65,0,432,65,432:0,0,9,13 +chrX 4759958 . T . . END=4759975 GT:DP:GQ:MIN_DP:PL 0/0:40:72:40:0,72,1080 +chrX 4759976 . G . . END=4759977 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,704 +chrX 4759978 . G . . END=4760414 GT:DP:GQ:MIN_DP:PL 0/0:38:30:34:0,30,926 +chrX 4760415 . A ATG, 378.60 . AS_QUALapprox=|386|0;AS_VarDP=10|13|0;BaseQRankSum=0.502;DP=39;MQRankSum=0.000;QUALapprox=386;RAW_GT_COUNT=0,1,0;RAW_MQandDP=140400,39;ReadPosRankSum=0.802;VarDP=23 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:10,13,0:23:99:0|1:4760415_A_ATG:386,0,293,417,332,749:4760415:6,4,5,8 +chrX 4760416 . T . . END=4760435 GT:DP:GQ:MIN_DP:PL 0/0:40:66:40:0,66,990 +chrX 4760436 . A T, 335.60 . AS_QUALapprox=|343|0;AS_VarDP=18|13|0;BaseQRankSum=0.831;DP=44;MQRankSum=0.000;QUALapprox=343;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=1.416;VarDP=31 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:18,13,0:31:99:1|0:4760415_A_ATG:343,0,547,383,630,1130:4760415:8,10,6,4 +chrX 4760437 . G . . END=4761175 GT:DP:GQ:MIN_DP:PL 0/0:40:55:40:0,55,892 +chrX 4761176 . C T, 605.64 . AS_QUALapprox=|613|0;AS_VarDP=18|21|0;BaseQRankSum=1.585;DP=44;MQRankSum=0.000;QUALapprox=613;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=-1.945;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:18,21,0:39:99:613,0,488,667,552,1218:11,7,11,10 +chrX 4761177 . A . . END=4761855 GT:DP:GQ:MIN_DP:PL 0/0:47:74:47:0,74,1077 +chrX 4761856 . G GGAGA, 553.60 . AS_QUALapprox=|561|0;AS_VarDP=19|15|0;BaseQRankSum=2.081;DP=38;MQRankSum=0.000;QUALapprox=561;RAW_GT_COUNT=0,1,0;RAW_MQandDP=136800,38;ReadPosRankSum=0.191;VarDP=34 GT:AD:DP:GQ:PL:SB 0/1:19,15,0:34:99:561,0,732,619,777,1396:7,12,6,9 +chrX 4761857 . G . . END=4765510 GT:DP:GQ:MIN_DP:PL 0/0:52:44:52:0,44,898 +chrX 4765511 . A AG, 537.60 . AS_QUALapprox=|545|0;AS_VarDP=26|17|0;BaseQRankSum=0.386;DP=48;MQRankSum=0.000;QUALapprox=545;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=-1.503;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:26,17,0:43:99:545,0,919,623,970,1593:11,15,11,6 +chrX 4765512 . C . . END=4766644 GT:DP:GQ:MIN_DP:PL 0/0:53:59:53:0,59,1197 +chrX 4766645 . G . . END=4766645 GT:DP:GQ:MIN_DP:PL 0/0:42:3:42:0,3,1063 +chrX 4766646 . T . . END=4766653 GT:DP:GQ:MIN_DP:PL 0/0:46:20:45:0,20,1131 +chrX 4766654 . C . . END=4766654 GT:DP:GQ:MIN_DP:PL 0/0:45:2:45:0,2,1147 +chrX 4766655 . T . . END=4766671 GT:DP:GQ:MIN_DP:PL 0/0:44:23:44:0,23,1115 +chrX 4766672 . A . . END=4766672 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,1052 +chrX 4766673 . T . . END=4766674 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,114,1710 +chrX 4766675 . G . . END=4766675 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,948 +chrX 4766676 . T . . END=4766682 GT:DP:GQ:MIN_DP:PL 0/0:40:66:40:0,66,1089 +chrX 4766683 . A . . END=4766683 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,952 +chrX 4766684 . T . . END=4766711 GT:DP:GQ:MIN_DP:PL 0/0:30:21:29:0,21,315 +chrX 4766712 . G . . END=4766713 GT:DP:GQ:MIN_DP:PL 0/0:24:0:24:0,0,297 +chrX 4766714 . G . . END=4766714 GT:DP:GQ:MIN_DP:PL 0/0:19:51:19:0,51,765 +chrX 4766715 . A . . END=4766715 GT:DP:GQ:MIN_DP:PL 0/0:19:18:19:0,18,542 +chrX 4766716 . C . . END=4766880 GT:DP:GQ:MIN_DP:PL 0/0:19:22:18:0,22,556 +chrX 4766881 . AT A, 687.60 . AS_QUALapprox=|695|0;AS_VarDP=16|29|0;BaseQRankSum=-0.168;DP=49;MQRankSum=-0.696;QUALapprox=695;RAW_GT_COUNT=0,1,0;RAW_MQandDP=175936,49;ReadPosRankSum=0.071;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:16,29,0:45:99:695,0,322,743,409,1152:9,7,16,13 +chrX 4766883 . T . . END=4767011 GT:DP:GQ:MIN_DP:PL 0/0:38:27:37:0,27,924 +chrX 4767012 . A . . END=4767012 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,972 +chrX 4767013 . CTTT C,CTTTT, 369.02 . AS_QUALapprox=|168|182|0;AS_VarDP=0|6|12|0;DP=39;QUALapprox=386;RAW_GT_COUNT=0,0,1;RAW_MQandDP=126666,39;VarDP=18 GT:AD:DP:GQ:PL:SB 1/2:0,6,12,0:18:99:386,218,514,215,0,204,430,393,232,581:0,0,5,13 +chrX 4767017 . T . . END=4767039 GT:DP:GQ:MIN_DP:PL 0/0:39:54:39:0,54,810 +chrX 4767040 . G . . END=4767041 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,679 +chrX 4767042 . G . . END=4767042 GT:DP:GQ:MIN_DP:PL 0/0:27:42:27:0,42,790 +chrX 4767043 . A . . END=4767043 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,789 +chrX 4767044 . T . . END=4767046 GT:DP:GQ:MIN_DP:PL 0/0:31:30:31:0,30,948 +chrX 4767047 . A . . END=4767047 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,671 +chrX 4767048 . G . . END=4767051 GT:DP:GQ:MIN_DP:PL 0/0:32:37:31:0,37,929 +chrX 4767052 . C . . END=4767052 GT:DP:GQ:MIN_DP:PL 0/0:28:15:28:0,15,764 +chrX 4767053 . G . . END=4767810 GT:DP:GQ:MIN_DP:PL 0/0:31:34:29:0,34,873 +chrX 4767811 . CT C, 386.60 . AS_QUALapprox=|394|0;AS_VarDP=10|20|0;BaseQRankSum=-0.851;DP=41;MQRankSum=0.000;QUALapprox=394;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147600,41;ReadPosRankSum=0.506;VarDP=30 GT:AD:DP:GQ:PL:SB 0/1:10,20,0:30:99:394,0,149,424,209,632:6,4,7,13 +chrX 4767813 . T . . END=4767827 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,99,1444 +chrX 4767828 . A . . END=4767828 GT:DP:GQ:MIN_DP:PL 0/0:42:2:42:0,2,1041 +chrX 4767829 . T . . END=4769993 GT:DP:GQ:MIN_DP:PL 0/0:57:57:57:0,57,1103 +chrX 4769994 . C A,CA, 407.60 . AS_QUALapprox=|86|415|0;AS_VarDP=15|5|20|0;BaseQRankSum=-0.668;DP=48;MQRankSum=0.000;QUALapprox=415;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=0.224;VarDP=40 GT:AD:DP:GQ:PL:SB 0/2:15,5,20,0:40:99:415,329,924,0,247,288,463,822,364,922:7,8,10,15 +chrX 4769995 . A . . END=4770008 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 4770009 . C . . END=4770009 GT:DP:GQ:MIN_DP:PL 0/0:55:12:55:0,12,1534 +chrX 4770010 . A . . END=4770140 GT:DP:GQ:MIN_DP:PL 0/0:55:57:55:0,57,1290 +chrX 4770141 . GA G, 522.60 . AS_QUALapprox=|530|0;AS_VarDP=20|24|0;BaseQRankSum=0.213;DP=54;MQRankSum=0.000;QUALapprox=530;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=-0.578;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:20,24,0:44:99:530,0,426,591,498,1089:10,10,15,9 +chrX 4770143 . A . . END=4771241 GT:DP:GQ:MIN_DP:PL 0/0:51:60:51:0,60,1103 +chrX 4771242 . CACACACACACAT C, 1268.60 . AS_QUALapprox=|1276|0;AS_VarDP=30|33|0;BaseQRankSum=-1.429;DP=65;MQRankSum=0.000;QUALapprox=1276;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=-0.220;VarDP=63 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:30,33,0:63:99:0|1:4771242_CACACACACACAT_C:1276,0,1160,1366,1260,2626:4771242:20,10,17,16 +chrX 4771255 . A G, 1267.64 . AS_QUALapprox=|1275|0;AS_VarDP=30|33|0;BaseQRankSum=-0.427;DP=63;MQRankSum=0.000;QUALapprox=1275;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=-0.398;VarDP=63 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:30,33,0:63:99:0|1:4771242_CACACACACACAT_C:1275,0,1160,1365,1260,2625:4771242:20,10,17,16 +chrX 4771256 . T . . END=4771768 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 4771769 . C T, 1056.64 . AS_QUALapprox=|1064|0;AS_VarDP=24|40|0;BaseQRankSum=-0.354;DP=68;MQRankSum=0.000;QUALapprox=1064;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=0.305;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:24,40,0:64:99:1064,0,568,1135,687,1823:12,12,24,16 +chrX 4771770 . A . . END=4772609 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1623 +chrX 4772610 . T G, 709.64 . AS_QUALapprox=|717|0;AS_VarDP=34|28|0;BaseQRankSum=0.233;DP=63;MQRankSum=0.000;QUALapprox=717;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=0.050;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:34,28,0:62:99:717,0,935,820,1018,1838:15,19,16,12 +chrX 4772611 . T . . END=4773700 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,115,1500 +chrX 4773701 . G A, 857.64 . AS_QUALapprox=|865|0;AS_VarDP=24|32|0;BaseQRankSum=-0.850;DP=56;MQRankSum=0.000;QUALapprox=865;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=0.058;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:24,32,0:56:99:865,0,590,936,686,1622:8,16,19,13 +chrX 4773702 . G . . END=4775153 GT:DP:GQ:MIN_DP:PL 0/0:50:41:50:0,41,843 +chrX 4775154 . G . . END=4775154 GT:DP:GQ:MIN_DP:PL 0/0:31:9:31:0,9,819 +chrX 4775155 . GAA G, 370.60 . AS_QUALapprox=|378|0;AS_VarDP=4|12|0;BaseQRankSum=-0.740;DP=28;MQRankSum=0.000;QUALapprox=378;RAW_GT_COUNT=0,1,0;RAW_MQandDP=100800,28;ReadPosRankSum=-1.822;VarDP=16 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:4,12,0:16:75:0|1:4775155_GAA_G:378,0,75,390,112,502:4775155:4,0,7,5 +chrX 4775158 . A . . END=4775167 GT:DP:GQ:MIN_DP:PL 0/0:27:63:27:0,63,945 +chrX 4775168 . A AT, 0.02 . AS_QUALapprox=|2|0;AS_VarDP=19|2|0;BaseQRankSum=0.588;DP=28;MQRankSum=0.000;QUALapprox=2;RAW_GT_COUNT=0,1,0;RAW_MQandDP=100800,28;ReadPosRankSum=2.339;VarDP=21 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:19,2,0:21:2:1|0:4775155_GAA_G:2,0,686,58,692,751:4775155:10,9,2,0 +chrX 4775169 . A . . END=4775169 GT:DP:GQ:MIN_DP:PL 0/0:30:4:30:0,4,754 +chrX 4775170 . A . . END=4775199 GT:DP:GQ:MIN_DP:PL 0/0:39:20:31:0,20,765 +chrX 4775200 . T . . END=4775200 GT:DP:GQ:MIN_DP:PL 0/0:39:13:39:0,13,1057 +chrX 4775201 . C . . END=4775205 GT:DP:GQ:MIN_DP:PL 0/0:43:57:43:0,57,1241 +chrX 4775206 . G . . END=4775206 GT:DP:GQ:MIN_DP:PL 0/0:41:19:41:0,19,1116 +chrX 4775207 . A . . END=4776292 GT:DP:GQ:MIN_DP:PL 0/0:50:59:50:0,59,1111 +chrX 4776293 . A AT, 1040.60 . AS_QUALapprox=|1048|0;AS_VarDP=24|35|0;BaseQRankSum=1.674;DP=63;MQRankSum=0.000;QUALapprox=1048;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=-0.355;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:24,35,0:59:99:1048,0,679,1120,785,1905:12,12,17,18 +chrX 4776294 . T . . END=4776509 GT:DP:GQ:MIN_DP:PL 0/0:57:96:57:0,96,1484 +chrX 4776510 . T C, 847.64 . AS_QUALapprox=|855|0;AS_VarDP=18|31|0;BaseQRankSum=-0.760;DP=50;MQRankSum=0.000;QUALapprox=855;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=2.044;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:18,31,0:49:99:855,0,458,909,551,1460:8,10,13,18 +chrX 4776511 . A . . END=4777076 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,118,1593 +chrX 4777077 . G T, 578.64 . AS_QUALapprox=|586|0;AS_VarDP=38|23|0;BaseQRankSum=0.557;DP=64;MQRankSum=1.133;QUALapprox=586;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226825,64;ReadPosRankSum=0.134;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:38,23,0:61:99:586,0,1067,700,1136,1837:16,22,10,13 +chrX 4777078 . G . . END=4777178 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,104,1574 +chrX 4777179 . G GAATA, 930.60 . AS_QUALapprox=|938|0;AS_VarDP=23|24|0;BaseQRankSum=0.805;DP=52;MQRankSum=0.000;QUALapprox=938;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=1.288;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:23,24,0:47:99:938,0,894,1008,966,1974:14,9,9,15 +chrX 4777180 . A . . END=4777875 GT:DP:GQ:MIN_DP:PL 0/0:46:62:46:0,62,1107 +chrX 4777876 . TTC T, 481.60 . AS_QUALapprox=|489|0;AS_VarDP=19|18|0;BaseQRankSum=-1.433;DP=47;MQRankSum=0.000;QUALapprox=489;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=-0.364;VarDP=37 GT:AD:DP:GQ:PL:SB 0/1:19,18,0:37:99:489,0,552,546,606,1152:10,9,6,12 +chrX 4777879 . T . . END=4778035 GT:DP:GQ:MIN_DP:PL 0/0:55:89:55:0,89,1440 +chrX 4778036 . C CTTTTTTTT, 603.60 . AS_QUALapprox=|611|0;AS_VarDP=20|17|0;BaseQRankSum=1.102;DP=41;MQRankSum=0.000;QUALapprox=611;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147600,41;ReadPosRankSum=-0.778;VarDP=37 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:20,17,0:37:99:0|1:4778036_C_CTTTTTTTT:611,0,720,671,771,1442:4778036:11,9,10,7 +chrX 4778037 . T . . END=4778049 GT:DP:GQ:MIN_DP:PL 0/0:40:63:40:0,63,1125 +chrX 4778050 . G . . END=4778051 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,813 +chrX 4778052 . G . . END=4778052 GT:DP:GQ:MIN_DP:PL 0/0:42:72:42:0,72,1130 +chrX 4778053 . A . . END=4778058 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,841 +chrX 4778059 . T . . END=4778068 GT:DP:GQ:MIN_DP:PL 0/0:38:50:38:0,50,1062 +chrX 4778069 . G . . END=4778069 GT:DP:GQ:MIN_DP:PL 0/0:35:16:35:0,16,868 +chrX 4778070 . C . . END=4778146 GT:DP:GQ:MIN_DP:PL 0/0:42:48:42:0,48,991 +chrX 4778147 . A C, 459.64 . AS_QUALapprox=|467|0;AS_VarDP=26|20|0;BaseQRankSum=-1.281;DP=48;MQRankSum=0.000;QUALapprox=467;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=-2.572;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:26,20,0:46:99:467,0,726,545,786,1331:13,13,12,8 +chrX 4778148 . G . . END=4778603 GT:DP:GQ:MIN_DP:PL 0/0:56:47:56:0,47,1239 +chrX 4778604 . GT G, 443.60 . AS_QUALapprox=|451|0;AS_VarDP=35|22|0;BaseQRankSum=0.971;DP=64;MQRankSum=0.000;QUALapprox=451;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=-0.451;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:35,22,0:57:99:451,0,798,555,864,1419:16,19,7,15 +chrX 4778606 . T . . END=4778718 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,112,1658 +chrX 4778719 . G . . END=4778719 GT:DP:GQ:MIN_DP:PL 0/0:50:0:50:0,0,1322 +chrX 4778720 . T . . END=4778737 GT:DP:GQ:MIN_DP:PL 0/0:54:81:54:0,81,1303 +chrX 4778738 . A . . END=4778738 GT:DP:GQ:MIN_DP:PL 0/0:52:8:52:0,8,1350 +chrX 4778739 . T . . END=4778763 GT:DP:GQ:MIN_DP:PL 0/0:55:42:55:0,42,1359 +chrX 4778764 . T C, 717.64 . AS_QUALapprox=|725|0;AS_VarDP=18|21|0;BaseQRankSum=-2.160;DP=40;MQRankSum=0.000;QUALapprox=725;RAW_GT_COUNT=0,1,0;RAW_MQandDP=144000,40;ReadPosRankSum=0.099;VarDP=39 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:18,21,0:39:99:0|1:4778764_T_C:725,0,665,779,728,1507:4778764:9,9,11,10 +chrX 4778765 . T . . END=4778766 GT:DP:GQ:MIN_DP:PL 0/0:38:69:38:0,69,1035 +chrX 4778767 . TC T, 720.60 . AS_QUALapprox=|728|0;AS_VarDP=17|21|0;BaseQRankSum=-1.819;DP=39;MQRankSum=0.000;QUALapprox=728;RAW_GT_COUNT=0,1,0;RAW_MQandDP=140400,39;ReadPosRankSum=0.030;VarDP=38 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:17,21,0:38:99:0|1:4778764_T_C:728,0,639,779,702,1481:4778764:9,8,11,10 +chrX 4778769 . T . . END=4778783 GT:DP:GQ:MIN_DP:PL 0/0:51:90:51:0,90,1350 +chrX 4778784 . C . . END=4778784 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,581 +chrX 4778785 . T . . END=4779093 GT:DP:GQ:MIN_DP:PL 0/0:50:65:50:0,65,1224 +chrX 4779094 . C T, 516.64 . AS_QUALapprox=|524|0;AS_VarDP=35|22|0;BaseQRankSum=-1.100;DP=58;MQRankSum=0.000;QUALapprox=524;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-2.148;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:35,22,0:57:99:524,0,956,628,1022,1650:19,16,9,13 +chrX 4779095 . T . . END=4779279 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,108,1380 +chrX 4779280 . T A, 570.64 . AS_QUALapprox=|578|0;AS_VarDP=30|22|0;BaseQRankSum=0.882;DP=53;MQRankSum=0.000;QUALapprox=578;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=1.492;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:30,22,0:52:99:578,0,814,669,880,1548:13,17,14,8 +chrX 4779281 . C . . END=4779309 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 4779310 . A C, 803.64 . AS_QUALapprox=|811|0;AS_VarDP=24|29|0;BaseQRankSum=1.444;DP=57;MQRankSum=0.000;QUALapprox=811;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205081,57;ReadPosRankSum=-2.109;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:24,29,0:53:99:811,0,610,882,697,1580:9,15,17,12 +chrX 4779311 . C . . END=4779387 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 4779388 . T C, 701.64 . AS_QUALapprox=|709|0;AS_VarDP=25|28|0;BaseQRankSum=-1.753;DP=54;MQRankSum=0.000;QUALapprox=709;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=0.864;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:25,28,0:53:99:709,0,680,784,764,1548:14,11,15,13 +chrX 4779389 . G . . END=4779585 GT:DP:GQ:MIN_DP:PL 0/0:48:74:48:0,74,1237 +chrX 4779586 . A C, 658.64 . AS_QUALapprox=|666|0;AS_VarDP=18|23|0;BaseQRankSum=2.438;DP=43;MQRankSum=0.000;QUALapprox=666;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154800,43;ReadPosRankSum=1.327;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:18,23,0:41:99:666,0,442,720,511,1232:8,10,12,11 +chrX 4779587 . T . . END=4779615 GT:DP:GQ:MIN_DP:PL 0/0:39:76:39:0,76,1018 +chrX 4779616 . A G, 556.64 . AS_QUALapprox=|564|0;AS_VarDP=15|22|0;BaseQRankSum=-0.179;DP=38;MQRankSum=0.000;QUALapprox=564;RAW_GT_COUNT=0,1,0;RAW_MQandDP=136800,38;ReadPosRankSum=0.681;VarDP=37 GT:AD:DP:GQ:PL:SB 0/1:15,22,0:37:99:564,0,370,609,435,1044:7,8,11,11 +chrX 4779617 . A . . END=4779789 GT:DP:GQ:MIN_DP:PL 0/0:51:89:51:0,89,1131 +chrX 4779790 . A T, 733.64 . AS_QUALapprox=|741|0;AS_VarDP=33|29|0;BaseQRankSum=0.242;DP=64;MQRankSum=0.000;QUALapprox=741;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=0.233;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:33,29,0:62:99:741,0,860,841,947,1788:18,15,17,12 +chrX 4779791 . A . . END=4779821 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 4779822 . T C, 695.64 . AS_QUALapprox=|703|0;AS_VarDP=27|28|0;BaseQRankSum=-0.870;DP=59;MQRankSum=0.000;QUALapprox=703;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-0.126;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:27,28,0:55:99:703,0,714,784,797,1581:14,13,16,12 +chrX 4779823 . A . . END=4779967 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,110,1414 +chrX 4779968 . C G, 690.64 . AS_QUALapprox=|698|0;AS_VarDP=25|27|0;BaseQRankSum=-1.203;DP=53;MQRankSum=0.000;QUALapprox=698;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=-1.099;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:25,27,0:52:99:698,0,667,772,748,1520:13,12,12,15 +chrX 4779969 . T . . END=4780026 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,117,1554 +chrX 4780027 . T C, 575.64 . AS_QUALapprox=|583|0;AS_VarDP=24|23|0;BaseQRankSum=-2.084;DP=49;MQRankSum=0.000;QUALapprox=583;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=-1.001;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:24,23,0:47:99:583,0,683,656,752,1408:11,13,12,11 +chrX 4780028 . T . . END=4780055 GT:DP:GQ:MIN_DP:PL 0/0:48:82:48:0,82,1444 +chrX 4780056 . G T, 537.64 . AS_QUALapprox=|545|0;AS_VarDP=26|21|0;BaseQRankSum=-0.203;DP=49;MQRankSum=0.000;QUALapprox=545;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=0.642;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:26,21,0:47:99:545,0,702,622,765,1387:13,13,10,11 +chrX 4780057 . T . . END=4780108 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,111,1579 +chrX 4780109 . A G, 492.64 . AS_QUALapprox=|500|0;AS_VarDP=21|19|0;BaseQRankSum=-2.162;DP=41;MQRankSum=0.000;QUALapprox=500;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147600,41;ReadPosRankSum=-0.474;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:21,19,0:40:99:500,0,610,563,667,1230:12,9,9,10 +chrX 4780110 . C . . END=4780324 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,99,1326 +chrX 4780325 . C T, 603.64 . AS_QUALapprox=|611|0;AS_VarDP=23|23|0;BaseQRankSum=-2.322;DP=48;MQRankSum=0.000;QUALapprox=611;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=-1.407;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:23,23,0:46:99:611,0,660,680,729,1409:13,10,8,15 +chrX 4780326 . T . . END=4780348 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 4780349 . GTATA G, 821.60 . AS_QUALapprox=|829|0;AS_VarDP=28|22|0;BaseQRankSum=0.066;DP=52;MQRankSum=0.000;QUALapprox=829;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=-0.546;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,22,0:50:99:0|1:4780349_GTATA_G:829,0,1109,913,1176,2089:4780349:15,13,9,13 +chrX 4780354 . T . . END=4780354 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 4780355 . GTA G, 821.60 . AS_QUALapprox=|829|0;AS_VarDP=28|22|0;BaseQRankSum=-0.676;DP=50;MQRankSum=0.000;QUALapprox=829;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=-0.743;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,22,0:50:99:0|1:4780349_GTATA_G:829,0,1109,913,1176,2089:4780349:15,13,9,13 +chrX 4780358 . T . . END=4780426 GT:DP:GQ:MIN_DP:PL 0/0:47:80:47:0,80,1356 +chrX 4780427 . C T, 804.64 . AS_QUALapprox=|812|0;AS_VarDP=23|21|0;BaseQRankSum=2.506;DP=45;MQRankSum=0.000;QUALapprox=812;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=-0.235;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,21,0:44:99:0|1:4780427_C_T:812,0,880,881,943,1824:4780427:13,10,12,9 +chrX 4780428 . G . . END=4780433 GT:DP:GQ:MIN_DP:PL 0/0:43:91:43:0,91,1320 +chrX 4780434 . A G, 807.64 . AS_QUALapprox=|815|0;AS_VarDP=22|21|0;BaseQRankSum=-0.101;DP=43;MQRankSum=0.000;QUALapprox=815;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154800,43;ReadPosRankSum=-0.134;VarDP=43 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,21,0:43:99:0|1:4780427_C_T:815,0,840,881,903,1784:4780427:11,11,12,9 +chrX 4780435 . G . . END=4780536 GT:DP:GQ:MIN_DP:PL 0/0:44:92:44:0,92,1226 +chrX 4780537 . T G, 499.64 . AS_QUALapprox=|507|0;AS_VarDP=29|20|0;BaseQRankSum=0.073;DP=50;MQRankSum=0.000;QUALapprox=507;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=0.814;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:29,20,0:49:99:507,0,799,595,859,1453:11,18,11,9 +chrX 4780538 . T . . END=4780621 GT:DP:GQ:MIN_DP:PL 0/0:44:96:44:0,96,1281 +chrX 4780622 . T C, 354.64 . AS_QUALapprox=|362|0;AS_VarDP=29|17|0;BaseQRankSum=-2.214;DP=49;MQRankSum=0.000;QUALapprox=362;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=-0.034;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:29,17,0:46:99:362,0,809,450,860,1309:13,16,11,6 +chrX 4780623 . G . . END=4781805 GT:DP:GQ:MIN_DP:PL 0/0:49:91:49:0,91,1146 +chrX 4781806 . T G, 585.64 . AS_QUALapprox=|593|0;AS_VarDP=27|17|0;BaseQRankSum=1.394;DP=45;MQRankSum=0.000;QUALapprox=593;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=-0.373;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,17,0:44:99:0|1:4781806_T_G:593,0,1032,674,1084,1757:4781806:17,10,8,9 +chrX 4781807 . A . . END=4781822 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,118,1400 +chrX 4781823 . T C, 616.64 . AS_QUALapprox=|624|0;AS_VarDP=27|18|0;BaseQRankSum=0.422;DP=45;MQRankSum=0.000;QUALapprox=624;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=-0.991;VarDP=45 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,18,0:45:99:0|1:4781806_T_G:624,0,1029,706,1084,1789:4781806:17,10,9,9 +chrX 4781824 . A . . END=4782575 GT:DP:GQ:MIN_DP:PL 0/0:46:66:46:0,66,1210 +chrX 4782576 . G A, 750.64 . AS_QUALapprox=|758|0;AS_VarDP=27|20|0;BaseQRankSum=2.501;DP=52;MQRankSum=0.000;QUALapprox=758;RAW_GT_COUNT=0,1,0;RAW_MQandDP=184329,52;ReadPosRankSum=-1.252;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,20,0:47:99:0|1:4782576_G_A:758,0,1048,839,1108,1947:4782576:11,16,11,9 +chrX 4782577 . A G, 750.64 . AS_QUALapprox=|758|0;AS_VarDP=27|20|0;BaseQRankSum=1.777;DP=51;MQRankSum=0.000;QUALapprox=758;RAW_GT_COUNT=0,1,0;RAW_MQandDP=179730,51;ReadPosRankSum=-0.925;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,20,0:47:99:0|1:4782576_G_A:758,0,1048,839,1108,1947:4782576:11,16,11,9 +chrX 4782578 . A . . END=4782625 GT:DP:GQ:MIN_DP:PL 0/0:45:95:45:0,95,1271 +chrX 4782626 . GTAGA G, 636.60 . AS_QUALapprox=|644|0;AS_VarDP=24|17|0;BaseQRankSum=1.674;DP=49;MQRankSum=1.240;QUALapprox=644;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172530,49;ReadPosRankSum=0.457;VarDP=41 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:24,17,0:41:99:1|0:4782576_G_A:644,0,849,714,901,1615:4782576:13,11,7,10 +chrX 4782631 . T . . END=4782929 GT:DP:GQ:MIN_DP:PL 0/0:48:69:48:0,69,1113 +chrX 4782930 . A G, 573.64 . AS_QUALapprox=|581|0;AS_VarDP=19|22|0;BaseQRankSum=-0.745;DP=41;MQRankSum=0.000;QUALapprox=581;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147600,41;ReadPosRankSum=1.583;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:19,22,0:41:99:581,0,509,639,574,1212:8,11,12,10 +chrX 4782931 . G . . END=4783100 GT:DP:GQ:MIN_DP:PL 0/0:41:67:41:0,67,955 +chrX 4783101 . A AGATG, 774.60 . AS_QUALapprox=|782|0;AS_VarDP=19|20|0;BaseQRankSum=1.504;DP=44;MQRankSum=0.000;QUALapprox=782;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=0.759;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:19,20,0:39:99:782,0,738,840,798,1638:10,9,8,12 +chrX 4783102 . G . . END=4783131 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,105,1575 +chrX 4783132 . T C, 537.64 . AS_QUALapprox=|545|0;AS_VarDP=20|20|0;BaseQRankSum=-0.448;DP=43;MQRankSum=0.000;QUALapprox=545;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154800,43;ReadPosRankSum=-1.530;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:20,20,0:40:99:545,0,555,605,615,1220:9,11,9,11 +chrX 4783133 . G . . END=4783194 GT:DP:GQ:MIN_DP:PL 0/0:40:96:40:0,96,1296 +chrX 4783195 . G A, 436.64 . AS_QUALapprox=|444|0;AS_VarDP=29|18|0;BaseQRankSum=-0.046;DP=48;MQRankSum=0.000;QUALapprox=444;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=-0.460;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:29,18,0:47:99:444,0,789,530,843,1374:14,15,10,8 +chrX 4783196 . T . . END=4783209 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,101,1269 +chrX 4783210 . AAGAT A, 553.60 . AS_QUALapprox=|561|0;AS_VarDP=23|15|0;BaseQRankSum=-1.442;DP=43;MQRankSum=0.000;QUALapprox=561;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154800,43;ReadPosRankSum=-0.105;VarDP=38 GT:AD:DP:GQ:PL:SB 0/1:23,15,0:38:99:561,0,920,630,966,1596:10,13,8,7 +chrX 4783215 . A . . END=4783702 GT:DP:GQ:MIN_DP:PL 0/0:40:52:40:0,52,844 +chrX 4783703 . A G, 542.64 . AS_QUALapprox=|550|0;AS_VarDP=15|20|0;BaseQRankSum=0.986;DP=36;MQRankSum=0.000;QUALapprox=550;RAW_GT_COUNT=0,1,0;RAW_MQandDP=129600,36;ReadPosRankSum=-0.817;VarDP=35 GT:AD:DP:GQ:PL:SB 0/1:15,20,0:35:99:550,0,351,595,411,1007:8,7,12,8 +chrX 4783704 . T . . END=4784227 GT:DP:GQ:MIN_DP:PL 0/0:45:84:45:0,84,1132 +chrX 4784228 . GT G, 549.60 . AS_QUALapprox=|557|0;AS_VarDP=16|24|0;BaseQRankSum=-1.095;DP=45;MQRankSum=0.000;QUALapprox=557;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=0.592;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:16,24,0:40:99:557,0,327,605,399,1004:4,12,16,8 +chrX 4784230 . T . . END=4784545 GT:DP:GQ:MIN_DP:PL 0/0:48:97:48:0,97,1240 +chrX 4784546 . A G, 739.64 . AS_QUALapprox=|747|0;AS_VarDP=35|30|0;BaseQRankSum=-1.201;DP=66;MQRankSum=0.000;QUALapprox=747;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=-0.184;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:35,30,0:65:99:747,0,951,852,1041,1893:22,13,15,15 +chrX 4784547 . C . . END=4785262 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,108,1433 +chrX 4785263 . ACC A, 830.60 . AS_QUALapprox=|838|0;AS_VarDP=15|24|0;BaseQRankSum=2.942;DP=51;MQRankSum=0.000;QUALapprox=838;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=1.455;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:15,24,0:39:99:838,0,450,883,522,1406:0,15,18,6 +chrX 4785266 . C . . END=4785308 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,110,1340 +chrX 4785309 . T C, 733.64 . AS_QUALapprox=|741|0;AS_VarDP=17|27|0;BaseQRankSum=-1.839;DP=44;MQRankSum=0.000;QUALapprox=741;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=-1.097;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:17,27,0:44:99:741,0,458,793,539,1331:2,15,19,8 +chrX 4785310 . A . . END=4785870 GT:DP:GQ:MIN_DP:PL 0/0:47:71:47:0,71,1264 +chrX 4785871 . C T, 740.64 . AS_QUALapprox=|748|0;AS_VarDP=37|28|0;BaseQRankSum=1.427;DP=65;MQRankSum=0.000;QUALapprox=748;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=0.205;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:37,28,0:65:99:748,0,980,859,1064,1923:21,16,15,13 +chrX 4785872 . T . . END=4785976 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 4785977 . G A, 539.64 . AS_QUALapprox=|547|0;AS_VarDP=30|20|0;BaseQRankSum=3.024;DP=51;MQRankSum=0.000;QUALapprox=547;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-1.318;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:30,20,0:50:99:547,0,708,635,769,1404:16,14,9,11 +chrX 4785978 . G . . END=4786270 GT:DP:GQ:MIN_DP:PL 0/0:49:75:49:0,75,1266 +chrX 4786271 . T C, 823.64 . AS_QUALapprox=|831|0;AS_VarDP=22|31|0;BaseQRankSum=-0.015;DP=54;MQRankSum=0.000;QUALapprox=831;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=-1.237;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:22,31,0:53:99:831,0,560,897,652,1549:12,10,20,11 +chrX 4786272 . T . . END=4786466 GT:DP:GQ:MIN_DP:PL 0/0:50:98:50:0,98,1250 +chrX 4786467 . T C, 645.64 . AS_QUALapprox=|653|0;AS_VarDP=33|24|0;BaseQRankSum=0.334;DP=57;MQRankSum=0.000;QUALapprox=653;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=0.558;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:33,24,0:57:99:653,0,955,752,1028,1780:23,10,12,12 +chrX 4786468 . T . . END=4787197 GT:DP:GQ:MIN_DP:PL 0/0:59:77:59:0,77,1430 +chrX 4787198 . C T, 917.64 . AS_QUALapprox=|925|0;AS_VarDP=27|32|0;BaseQRankSum=1.623;DP=62;MQRankSum=0.000;QUALapprox=925;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=-0.274;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:27,32,0:59:99:925,0,705,1006,801,1808:10,17,18,14 +chrX 4787199 . G . . END=4787592 GT:DP:GQ:MIN_DP:PL 0/0:46:80:46:0,80,1141 +chrX 4787593 . GA G, 525.60 . AS_QUALapprox=|533|0;AS_VarDP=15|25|0;BaseQRankSum=0.152;DP=45;MQRankSum=-1.072;QUALapprox=533;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158336,45;ReadPosRankSum=0.475;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:15,25,0:40:99:533,0,281,578,356,933:7,8,16,9 +chrX 4787595 . A . . END=4788000 GT:DP:GQ:MIN_DP:PL 0/0:44:60:44:0,60,1247 +chrX 4788001 . T C, 961.64 . AS_QUALapprox=|969|0;AS_VarDP=22|35|0;BaseQRankSum=-0.376;DP=57;MQRankSum=0.000;QUALapprox=969;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-0.197;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:22,35,0:57:99:969,0,564,1036,669,1704:12,10,18,17 +chrX 4788002 . A . . END=4788662 GT:DP:GQ:MIN_DP:PL 0/0:58:84:58:0,84,1245 +chrX 4788663 . C A, 702.64 . AS_QUALapprox=|710|0;AS_VarDP=28|28|0;BaseQRankSum=-1.323;DP=57;MQRankSum=0.000;QUALapprox=710;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=0.090;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:28,28,0:56:99:710,0,765,794,849,1643:13,15,17,11 +chrX 4788664 . T . . END=4788944 GT:DP:GQ:MIN_DP:PL 0/0:50:73:50:0,73,1101 +chrX 4788945 . T G, 1618.06 . AS_QUALapprox=|1632|0;AS_VarDP=0|37|0;DP=37;QUALapprox=1632;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133200,37;VarDP=37 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,37,0:37:99:0|1:4788945_T_G:1632,111,0,1632,111,1632:4788945:0,0,14,23 +chrX 4788946 . A . . END=4788961 GT:DP:GQ:MIN_DP:PL 0/0:36:81:36:0,81,1062 +chrX 4788962 . T A, 1617.06 . AS_QUALapprox=|1631|0;AS_VarDP=0|37|0;DP=37;QUALapprox=1631;RAW_GT_COUNT=0,0,1;RAW_MQandDP=133200,37;VarDP=37 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,37,0:37:99:0|1:4788945_T_G:1631,111,0,1631,111,1631:4788945:0,0,15,22 +chrX 4788963 . G . . END=4789012 GT:DP:GQ:MIN_DP:PL 0/0:39:91:39:0,91,1072 +chrX 4789013 . A T, 1275.06 . AS_QUALapprox=|1289|0;AS_VarDP=0|42|0;DP=43;QUALapprox=1289;RAW_GT_COUNT=0,0,1;RAW_MQandDP=154800,43;VarDP=42 GT:AD:DP:GQ:PL:SB 1/1:0,42,0:42:99:1289,124,0,1289,124,1289:0,0,17,25 +chrX 4789014 . T . . END=4789128 GT:DP:GQ:MIN_DP:PL 0/0:25:35:22:0,35,585 +chrX 4789129 . T . . END=4789130 GT:DP:GQ:MIN_DP:PL 0/0:23:0:23:0,0,542 +chrX 4789131 . T . . END=4789131 GT:DP:GQ:MIN_DP:PL 0/0:23:30:23:0,30,411 +chrX 4789132 . A . . END=4789132 GT:DP:GQ:MIN_DP:PL 0/0:21:14:21:0,14,591 +chrX 4789133 . A . . END=4789142 GT:DP:GQ:MIN_DP:PL 0/0:22:24:22:0,24,360 +chrX 4789143 . A AT, 15.59 . AS_QUALapprox=|23|0;AS_VarDP=10|3|0;BaseQRankSum=0.000;DP=22;MQRankSum=-0.971;QUALapprox=23;RAW_GT_COUNT=0,1,0;RAW_MQandDP=65483,22;ReadPosRankSum=0.000;VarDP=13 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|0:10,3,0:13:23:1|0:4789131_T_TAA:23,0,276,54,284,338:4789131:6,4,2,1 +chrX 4789144 . A T,AATATATAT,ATATATAT,AAAATATATAT,AAATATATAT, 553.02 . AS_QUALapprox=|151|326|377|339|128|0;AS_VarDP=0|0|0|3|2|0|0;DP=22;QUALapprox=570;RAW_GT_COUNT=0,0,1;RAW_MQandDP=65483,22;VarDP=5 GT:AD:DP:GQ:PL:SB 3/4:0,0,0,3,2,0,0:5:82:570,419,594,244,218,318,193,371,151,340,231,82,203,0,266,442,448,352,308,235,562,479,490,354,336,240,566,600:0,0,3,2 +chrX 4789145 . A . . END=4789145 GT:DP:GQ:MIN_DP:PL 0/0:25:27:25:0,27,405 +chrX 4789146 . T . . END=4789146 GT:DP:GQ:MIN_DP:PL 0/0:24:0:24:0,0,457 +chrX 4789147 . A . . END=4789184 GT:DP:GQ:MIN_DP:PL 0/0:26:30:23:0,30,450 +chrX 4789185 . T . . END=4789188 GT:DP:GQ:MIN_DP:PL 0/0:29:0:29:0,0,589 +chrX 4789189 . A . . END=4789190 GT:DP:GQ:MIN_DP:PL 0/0:27:26:25:0,26,680 +chrX 4789191 . T . . END=4789191 GT:DP:GQ:MIN_DP:PL 0/0:24:12:24:0,12,664 +chrX 4789192 . T . . END=4789193 GT:DP:GQ:MIN_DP:PL 0/0:26:40:26:0,40,733 +chrX 4789194 . G . . END=4789195 GT:DP:GQ:MIN_DP:PL 0/0:27:9:27:0,9,714 +chrX 4789196 . T . . END=4789326 GT:DP:GQ:MIN_DP:PL 0/0:37:43:37:0,43,794 +chrX 4789327 . T TA, 1011.03 . AS_QUALapprox=|1025|0;AS_VarDP=0|34|0;DP=38;QUALapprox=1025;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;VarDP=34 GT:AD:DP:GQ:PL:SB 1/1:0,34,0:34:99:1025,102,0,1025,102,1025:0,0,18,16 +chrX 4789328 . A . . END=4789714 GT:DP:GQ:MIN_DP:PL 0/0:49:61:49:0,61,1221 +chrX 4789715 . A ATTAGAC, 2578.03 . AS_QUALapprox=|2592|0;AS_VarDP=1|59|0;BaseQRankSum=-0.314;DP=63;MQRankSum=0.000;QUALapprox=2592;RAW_GT_COUNT=0,0,1;RAW_MQandDP=226800,63;ReadPosRankSum=1.127;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:1,59,0:60:99:2592,135,0,2596,178,2638:0,1,30,29 +chrX 4789716 . T . . END=4789793 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 4789794 . C CGTAA, 2661.03 . AS_QUALapprox=|2675|0;AS_VarDP=0|61|0;DP=65;QUALapprox=2675;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=61 GT:AD:DP:GQ:PL:SB 1/1:0,61,0:61:99:2675,183,0,2675,183,2675:0,0,31,30 +chrX 4789795 . G . . END=4789987 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,103,1800 +chrX 4789988 . T G, 699.64 . AS_QUALapprox=|707|0;AS_VarDP=26|26|0;BaseQRankSum=-2.042;DP=53;MQRankSum=0.000;QUALapprox=707;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=1.080;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:26,26,0:52:99:707,0,747,786,825,1611:12,14,8,18 +chrX 4789989 . A . . END=4791081 GT:DP:GQ:MIN_DP:PL 0/0:52:85:52:0,85,1332 +chrX 4791082 . ATTTTT A, 623.60 . AS_QUALapprox=|631|0;AS_VarDP=14|16|0;BaseQRankSum=-2.189;DP=47;MQRankSum=0.000;QUALapprox=631;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=-1.464;VarDP=30 GT:AD:DP:GQ:PL:SB 0/1:14,16,0:30:99:631,0,475,673,524,1196:9,5,5,11 +chrX 4791088 . T . . END=4791101 GT:DP:GQ:MIN_DP:PL 0/0:45:50:45:0,50,1080 +chrX 4791102 . T . . END=4791104 GT:DP:GQ:MIN_DP:PL 0/0:40:0:40:0,0,1018 +chrX 4791105 . T . . END=4791105 GT:DP:GQ:MIN_DP:PL 0/0:40:51:40:0,51,1181 +chrX 4791106 . G . . END=4791107 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,746 +chrX 4791108 . G . . END=4791901 GT:DP:GQ:MIN_DP:PL 0/0:31:35:28:0,35,795 +chrX 4791902 . T C, 1394.06 . AS_QUALapprox=|1408|0;AS_VarDP=0|45|0;DP=47;QUALapprox=1408;RAW_GT_COUNT=0,0,1;RAW_MQandDP=169200,47;VarDP=45 GT:AD:DP:GQ:PL:SB 1/1:0,45,0:45:99:1408,134,0,1408,134,1408:0,0,27,18 +chrX 4791903 . A . . END=4794298 GT:DP:GQ:MIN_DP:PL 0/0:59:70:59:0,70,1330 +chrX 4794299 . C A, 742.64 . AS_QUALapprox=|750|0;AS_VarDP=31|28|0;BaseQRankSum=1.670;DP=61;MQRankSum=0.000;QUALapprox=750;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=-0.516;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:31,28,0:59:99:750,0,796,843,879,1723:18,13,18,10 +chrX 4794300 . G . . END=4796071 GT:DP:GQ:MIN_DP:PL 0/0:52:23:51:0,23,1206 +chrX 4796072 . G A, 633.64 . AS_QUALapprox=|641|0;AS_VarDP=27|24|0;BaseQRankSum=-0.997;DP=52;MQRankSum=0.000;QUALapprox=641;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=1.407;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:27,24,0:51:99:641,0,765,722,837,1559:14,13,13,11 +chrX 4796073 . C . . END=4796247 GT:DP:GQ:MIN_DP:PL 0/0:51:88:51:0,88,1420 +chrX 4796248 . A C, 557.64 . AS_QUALapprox=|565|0;AS_VarDP=20|20|0;BaseQRankSum=2.075;DP=41;MQRankSum=0.000;QUALapprox=565;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147600,41;ReadPosRankSum=-1.001;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:20,20,0:40:99:565,0,515,625,575,1200:8,12,8,12 +chrX 4796249 . G . . END=4796325 GT:DP:GQ:MIN_DP:PL 0/0:37:76:37:0,76,1157 +chrX 4796326 . G A, 353.64 . AS_QUALapprox=|361|0;AS_VarDP=20|15|0;BaseQRankSum=-2.385;DP=37;MQRankSum=0.000;QUALapprox=361;RAW_GT_COUNT=0,1,0;RAW_MQandDP=133200,37;ReadPosRankSum=-0.484;VarDP=35 GT:AD:DP:GQ:PL:SB 0/1:20,15,0:35:99:361,0,590,421,635,1056:15,5,8,7 +chrX 4796327 . T . . END=4797365 GT:DP:GQ:MIN_DP:PL 0/0:56:76:56:0,76,1146 +chrX 4797366 . A G, 432.64 . AS_QUALapprox=|440|0;AS_VarDP=27|17|0;BaseQRankSum=0.987;DP=46;MQRankSum=0.000;QUALapprox=440;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=2.086;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:27,17,0:44:99:440,0,701,520,752,1272:12,15,10,7 +chrX 4797367 . C . . END=4798519 GT:DP:GQ:MIN_DP:PL 0/0:48:49:48:0,49,1026 +chrX 4798520 . G A, 1440.06 . AS_QUALapprox=|1454|0;AS_VarDP=0|46|0;DP=49;QUALapprox=1454;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1454,138,0,1454,138,1454:0,0,22,24 +chrX 4798521 . T . . END=4798765 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,100,1315 +chrX 4798766 . G C, 551.64 . AS_QUALapprox=|559|0;AS_VarDP=22|20|0;BaseQRankSum=2.216;DP=43;MQRankSum=0.000;QUALapprox=559;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154800,43;ReadPosRankSum=-0.756;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:22,20,0:42:99:559,0,552,625,612,1237:11,11,13,7 +chrX 4798767 . C . . END=4799055 GT:DP:GQ:MIN_DP:PL 0/0:52:83:52:0,83,1304 +chrX 4799056 . G A, 216.64 . AS_QUALapprox=|224|0;AS_VarDP=30|11|0;BaseQRankSum=0.225;DP=43;MQRankSum=0.000;QUALapprox=224;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154800,43;ReadPosRankSum=0.397;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:30,11,0:41:99:224,0,848,315,881,1195:15,15,5,6 +chrX 4799057 . A . . END=4800595 GT:DP:GQ:MIN_DP:PL 0/0:54:95:54:0,95,1146 +chrX 4800596 . A G, 904.64 . AS_QUALapprox=|912|0;AS_VarDP=31|34|0;BaseQRankSum=-0.556;DP=66;MQRankSum=0.000;QUALapprox=912;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=0.880;VarDP=65 GT:AD:DP:GQ:PL:SB 0/1:31,34,0:65:99:912,0,843,1005,944,1949:18,13,11,23 +chrX 4800597 . T . . END=4801219 GT:DP:GQ:MIN_DP:PL 0/0:60:90:60:0,90,1545 +chrX 4801220 . G GT, 1198.03 . AS_QUALapprox=|1212|0;AS_VarDP=0|49|0;DP=65;QUALapprox=1212;RAW_GT_COUNT=0,0,1;RAW_MQandDP=230800,65;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1212,145,0,1212,145,1212:0,0,23,26 +chrX 4801221 . T . . END=4801392 GT:DP:GQ:MIN_DP:PL 0/0:50:93:50:0,93,1212 +chrX 4801393 . G T, 1674.06 . AS_QUALapprox=|1688|0;AS_VarDP=0|50|0;DP=51;QUALapprox=1688;RAW_GT_COUNT=0,0,1;RAW_MQandDP=183600,51;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1688,150,0,1688,150,1688:0,0,25,25 +chrX 4801394 . T . . END=4802031 GT:DP:GQ:MIN_DP:PL 0/0:54:77:54:0,77,1177 +chrX 4802032 . C T, 932.64 . AS_QUALapprox=|940|0;AS_VarDP=26|33|0;BaseQRankSum=0.321;DP=60;MQRankSum=0.000;QUALapprox=940;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=0.351;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:26,33,0:59:99:940,0,696,1018,796,1813:10,16,15,18 +chrX 4802033 . T . . END=4802743 GT:DP:GQ:MIN_DP:PL 0/0:57:77:57:0,77,1270 +chrX 4802744 . C T, 750.64 . AS_QUALapprox=|758|0;AS_VarDP=25|27|0;BaseQRankSum=2.085;DP=53;MQRankSum=0.000;QUALapprox=758;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=0.082;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:25,27,0:52:99:758,0,623,832,704,1536:10,15,8,19 +chrX 4802745 . T . . END=4803295 GT:DP:GQ:MIN_DP:PL 0/0:52:49:52:0,49,1093 +chrX 4803296 . CT C, 293.60 . AS_QUALapprox=|301|0;AS_VarDP=7|19|0;BaseQRankSum=-0.630;DP=49;MQRankSum=1.772;QUALapprox=301;RAW_GT_COUNT=0,1,0;RAW_MQandDP=168232,49;ReadPosRankSum=0.549;VarDP=26 GT:AD:DP:GQ:PL:SB 0/1:7,19,0:26:49:301,0,49,322,106,427:6,1,3,16 +chrX 4803298 . T . . END=4803319 GT:DP:GQ:MIN_DP:PL 0/0:55:84:55:0,84,1260 +chrX 4803320 . G . . END=4803320 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,739 +chrX 4803321 . A . . END=4804082 GT:DP:GQ:MIN_DP:PL 0/0:41:30:37:0,30,1032 +chrX 4804083 . T C, 1767.06 . AS_QUALapprox=|1781|0;AS_VarDP=0|57|0;DP=60;QUALapprox=1781;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1781,170,0,1781,170,1781:0,0,27,30 +chrX 4804084 . G . . END=4804333 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 4804334 . T C, 1710.06 . AS_QUALapprox=|1724|0;AS_VarDP=0|56|0;DP=59;QUALapprox=1724;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,56,0:56:99:1724,167,0,1724,167,1724:0,0,27,29 +chrX 4804335 . G . . END=4805864 GT:DP:GQ:MIN_DP:PL 0/0:55:81:55:0,81,1186 +chrX 4805865 . G A, 773.64 . AS_QUALapprox=|781|0;AS_VarDP=31|31|0;BaseQRankSum=-1.015;DP=62;MQRankSum=0.000;QUALapprox=781;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=-0.556;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:31,31,0:62:99:781,0,842,875,934,1809:17,14,16,15 +chrX 4805866 . C . . END=4805944 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 4805945 . A G, 630.64 . AS_QUALapprox=|638|0;AS_VarDP=32|25|0;BaseQRankSum=-0.467;DP=62;MQRankSum=0.000;QUALapprox=638;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=0.877;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:32,25,0:57:99:638,0,880,734,955,1689:15,17,11,14 +chrX 4805946 . T . . END=4806095 GT:DP:GQ:MIN_DP:PL 0/0:68:95:68:0,95,1543 +chrX 4806096 . T TTTTTAA, 2214.03 . AS_QUALapprox=|2228|0;AS_VarDP=0|52|0;DP=58;QUALapprox=2228;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208449,58;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,52,0:52:99:2228,156,0,2228,156,2228:0,0,24,28 +chrX 4806097 . T . . END=4806101 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 4806102 . T . . END=4806102 GT:DP:GQ:MIN_DP:PL 0/0:55:0:55:0,0,1226 +chrX 4806103 . T . . END=4806106 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 4806107 . C . . END=4806107 GT:DP:GQ:MIN_DP:PL 0/0:52:13:52:0,13,1420 +chrX 4806108 . T . . END=4807638 GT:DP:GQ:MIN_DP:PL 0/0:60:75:60:0,75,1251 +chrX 4807639 . G T,GTTTATC,C, 872.60 . AS_QUALapprox=|0|880|239|0;AS_VarDP=18|1|22|1|0;BaseQRankSum=-2.626;DP=54;MQRankSum=0.000;QUALapprox=880;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=-0.153;VarDP=42 GT:AD:DP:GQ:PL:SB 0/2:18,1,22,1,0:42:99:880,924,1591,0,582,747,641,1334,803,1517,953,1645,828,1580,1892:12,6,16,8 +chrX 4807640 . T . . END=4808342 GT:DP:GQ:MIN_DP:PL 0/0:48:63:48:0,63,1012 +chrX 4808343 . T C, 552.64 . AS_QUALapprox=|560|0;AS_VarDP=25|20|0;BaseQRankSum=2.119;DP=48;MQRankSum=0.000;QUALapprox=560;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=-1.439;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:25,20,0:45:99:560,0,684,635,744,1379:11,14,9,11 +chrX 4808344 . T . . END=4808746 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,104,1463 +chrX 4808747 . T C, 1439.06 . AS_QUALapprox=|1453|0;AS_VarDP=0|46|0;DP=48;QUALapprox=1453;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1453,137,0,1453,137,1453:0,0,26,20 +chrX 4808748 . G . . END=4809839 GT:DP:GQ:MIN_DP:PL 0/0:57:57:57:0,57,1195 +chrX 4809840 . GA G, 395.60 . AS_QUALapprox=|403|0;AS_VarDP=16|21|0;BaseQRankSum=0.943;DP=48;MQRankSum=0.000;QUALapprox=403;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=1.197;VarDP=37 GT:AD:DP:GQ:PL:SB 0/1:16,21,0:37:99:403,0,251,451,314,764:7,9,8,13 +chrX 4809842 . A . . END=4810367 GT:DP:GQ:MIN_DP:PL 0/0:50:68:50:0,68,978 +chrX 4810368 . CATA C, 847.60 . AS_QUALapprox=|855|0;AS_VarDP=23|22|0;BaseQRankSum=-0.505;DP=49;MQRankSum=0.000;QUALapprox=855;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=-0.159;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:23,22,0:45:99:855,0,899,924,966,1890:9,14,12,10 +chrX 4810372 . A . . END=4810639 GT:DP:GQ:MIN_DP:PL 0/0:55:98:55:0,98,1405 +chrX 4810640 . C T, 629.64 . AS_QUALapprox=|637|0;AS_VarDP=25|24|0;BaseQRankSum=-0.342;DP=50;MQRankSum=0.000;QUALapprox=637;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=-1.991;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:25,24,0:49:99:637,0,663,712,735,1447:13,12,11,13 +chrX 4810641 . C . . END=4810706 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,100,1394 +chrX 4810707 . G C, 727.64 . AS_QUALapprox=|735|0;AS_VarDP=24|27|0;BaseQRankSum=-1.029;DP=51;MQRankSum=0.000;QUALapprox=735;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=1.039;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:24,27,0:51:99:735,0,660,807,742,1549:11,13,14,13 +chrX 4810708 . T . . END=4810819 GT:DP:GQ:MIN_DP:PL 0/0:45:60:45:0,60,1130 +chrX 4810820 . C . . END=4810820 GT:DP:GQ:MIN_DP:PL 0/0:41:4:41:0,4,1066 +chrX 4810821 . CA C,CAA,CAAA, 423.02 . AS_QUALapprox=|147|225|154|0;AS_VarDP=0|12|7|2|0;DP=49;QUALapprox=440;RAW_GT_COUNT=0,0,1;RAW_MQandDP=168400,49;VarDP=21 GT:AD:DP:GQ:PL:SB 1/2:0,12,7,2,0:21:89:440,293,423,215,0,237,286,89,253,428,469,300,287,387,547:0,0,11,10 +chrX 4810823 . A . . END=4811730 GT:DP:GQ:MIN_DP:PL 0/0:39:39:36:0,39,1042 +chrX 4811731 . G . . END=4811735 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,974 +chrX 4811736 . A ATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT, 347.60 . AS_QUALapprox=|355|0;AS_VarDP=6|9|0;BaseQRankSum=0.674;DP=37;MQRankSum=-0.949;QUALapprox=355;RAW_GT_COUNT=0,1,0;RAW_MQandDP=129200,37;ReadPosRankSum=-1.400;VarDP=15 GT:AD:DP:GQ:PL:SB 0/1:6,9,0:15:99:355,0,230,378,257,635:3,3,5,4 +chrX 4811737 . T . . END=4811755 GT:DP:GQ:MIN_DP:PL 0/0:36:45:36:0,45,675 +chrX 4811756 . G . . END=4811764 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,391 +chrX 4811765 . T . . END=4811765 GT:DP:GQ:MIN_DP:PL 0/0:35:84:35:0,84,1260 +chrX 4811766 . C . . END=4811766 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,744 +chrX 4811767 . T . . END=4811767 GT:DP:GQ:MIN_DP:PL 0/0:36:87:36:0,87,1305 +chrX 4811768 . C . . END=4811770 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,696 +chrX 4811771 . T . . END=4811771 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1440 +chrX 4811772 . C . . END=4811772 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,869 +chrX 4811773 . T . . END=4811773 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,99,1485 +chrX 4811774 . G . . END=4811774 GT:DP:GQ:MIN_DP:PL 0/0:32:2:32:0,2,853 +chrX 4811775 . T . . END=4811775 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,99,1485 +chrX 4811776 . C . . END=4811781 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,859 +chrX 4811782 . G . . END=4812008 GT:DP:GQ:MIN_DP:PL 0/0:36:39:36:0,39,1017 +chrX 4812009 . C T, 630.64 . AS_QUALapprox=|638|0;AS_VarDP=24|24|0;BaseQRankSum=-0.351;DP=51;MQRankSum=1.042;QUALapprox=638;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183136,51;ReadPosRankSum=0.165;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:24,24,0:48:99:638,0,650,711,722,1433:8,16,12,12 +chrX 4812010 . T . . END=4812523 GT:DP:GQ:MIN_DP:PL 0/0:49:74:49:0,74,1062 +chrX 4812524 . T C, 501.64 . AS_QUALapprox=|509|0;AS_VarDP=28|20|0;BaseQRankSum=-2.424;DP=50;MQRankSum=0.000;QUALapprox=509;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=-0.220;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:28,20,0:48:99:509,0,829,593,889,1483:12,16,10,10 +chrX 4812525 . G . . END=4812738 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,109,1519 +chrX 4812739 . A G, 710.64 . AS_QUALapprox=|718|0;AS_VarDP=23|19|0;BaseQRankSum=-0.171;DP=43;MQRankSum=0.000;QUALapprox=718;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154800,43;ReadPosRankSum=0.641;VarDP=42 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,19,0:42:99:0|1:4812739_A_G:718,0,898,787,956,1743:4812739:9,14,10,9 +chrX 4812740 . T . . END=4812745 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,117,1755 +chrX 4812746 . A G, 673.64 . AS_QUALapprox=|681|0;AS_VarDP=25|18|0;BaseQRankSum=-0.493;DP=44;MQRankSum=0.000;QUALapprox=681;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=1.626;VarDP=43 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,18,0:43:99:0|1:4812739_A_G:681,0,955,756,1009,1765:4812739:10,15,10,8 +chrX 4812747 . C . . END=4813372 GT:DP:GQ:MIN_DP:PL 0/0:48:41:48:0,41,1037 +chrX 4813373 . A G, 833.64 . AS_QUALapprox=|841|0;AS_VarDP=20|29|0;BaseQRankSum=0.931;DP=55;MQRankSum=0.000;QUALapprox=841;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=1.048;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:20,29,0:49:99:841,0,517,901,604,1505:12,8,11,18 +chrX 4813374 . T . . END=4814356 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 4814357 . G C, 715.64 . AS_QUALapprox=|723|0;AS_VarDP=26|27|0;BaseQRankSum=-0.379;DP=54;MQRankSum=0.000;QUALapprox=723;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=0.187;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:26,27,0:53:99:723,0,715,802,795,1597:16,10,11,16 +chrX 4814358 . T . . END=4815620 GT:DP:GQ:MIN_DP:PL 0/0:53:72:53:0,72,1080 +chrX 4815621 . T C, 808.64 . AS_QUALapprox=|816|0;AS_VarDP=35|32|0;BaseQRankSum=-0.263;DP=69;MQRankSum=0.986;QUALapprox=816;RAW_GT_COUNT=0,1,0;RAW_MQandDP=247716,69;ReadPosRankSum=0.094;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:35,32,0:67:99:816,0,935,921,1031,1952:22,13,21,11 +chrX 4815622 . A . . END=4815995 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,108,1696 +chrX 4815996 . C . . END=4815996 GT:DP:GQ:MIN_DP:PL 0/0:56:0:56:0,0,1422 +chrX 4815997 . A . . END=4816322 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 4816323 . T A, 747.64 . AS_QUALapprox=|755|0;AS_VarDP=26|27|0;BaseQRankSum=1.700;DP=57;MQRankSum=0.000;QUALapprox=755;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-0.027;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:26,27,0:53:99:755,0,692,833,773,1605:10,16,15,12 +chrX 4816324 . G . . END=4816699 GT:DP:GQ:MIN_DP:PL 0/0:55:89:55:0,89,1181 +chrX 4816700 . G A, 1513.06 . AS_QUALapprox=|1527|0;AS_VarDP=0|46|0;DP=48;QUALapprox=1527;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1527,138,0,1527,138,1527:0,0,22,24 +chrX 4816701 . A . . END=4817412 GT:DP:GQ:MIN_DP:PL 0/0:50:89:50:0,89,1184 +chrX 4817413 . C T, 678.64 . AS_QUALapprox=|686|0;AS_VarDP=25|26|0;BaseQRankSum=0.343;DP=54;MQRankSum=0.000;QUALapprox=686;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=-0.302;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:25,26,0:51:99:686,0,656,761,734,1495:12,13,12,14 +chrX 4817414 . G . . END=4818360 GT:DP:GQ:MIN_DP:PL 0/0:53:80:53:0,80,1310 +chrX 4818361 . T C, 863.64 . AS_QUALapprox=|871|0;AS_VarDP=19|24|0;BaseQRankSum=-0.687;DP=44;MQRankSum=0.000;QUALapprox=871;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=0.314;VarDP=43 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:19,24,0:43:99:0|1:4818361_T_C:871,0,714,928,786,1714:4818361:8,11,9,15 +chrX 4818362 . A . . END=4818375 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,117,1755 +chrX 4818376 . C T, 794.64 . AS_QUALapprox=|802|0;AS_VarDP=21|22|0;BaseQRankSum=1.117;DP=45;MQRankSum=0.000;QUALapprox=802;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=0.462;VarDP=43 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,22,0:43:99:0|1:4818361_T_C:802,0,784,865,850,1715:4818361:10,11,9,13 +chrX 4818377 . G . . END=4819830 GT:DP:GQ:MIN_DP:PL 0/0:52:62:52:0,62,918 +chrX 4819831 . T C, 715.64 . AS_QUALapprox=|723|0;AS_VarDP=22|28|0;BaseQRankSum=-1.478;DP=51;MQRankSum=0.000;QUALapprox=723;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=0.049;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:22,28,0:50:99:723,0,595,790,678,1468:13,9,12,16 +chrX 4819832 . A . . END=4820101 GT:DP:GQ:MIN_DP:PL 0/0:47:97:47:0,97,1236 +chrX 4820102 . G T, 1035.64 . AS_QUALapprox=|1043|0;AS_VarDP=24|37|0;BaseQRankSum=1.990;DP=65;MQRankSum=0.000;QUALapprox=1043;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=0.724;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:24,37,0:61:99:1043,0,530,1115,641,1756:12,12,24,13 +chrX 4820103 . G . . END=4820154 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 4820155 . C T, 1016.64 . AS_QUALapprox=|1024|0;AS_VarDP=22|35|0;BaseQRankSum=1.495;DP=58;MQRankSum=0.000;QUALapprox=1024;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=0.180;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:22,35,0:57:99:1024,0,553,1090,658,1749:14,8,19,16 +chrX 4820156 . A . . END=4820305 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,119,1727 +chrX 4820306 . A T, 917.64 . AS_QUALapprox=|925|0;AS_VarDP=25|34|0;BaseQRankSum=-1.931;DP=63;MQRankSum=0.000;QUALapprox=925;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=-1.166;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:25,34,0:59:99:925,0,667,1000,769,1769:8,17,14,20 +chrX 4820307 . T . . END=4820844 GT:DP:GQ:MIN_DP:PL 0/0:63:77:63:0,77,1468 +chrX 4820845 . A ATCTG, 1428.60 . AS_QUALapprox=|1436|0;AS_VarDP=25|36|0;BaseQRankSum=1.271;DP=63;MQRankSum=0.000;QUALapprox=1436;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=2.384;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:25,36,0:61:99:1436,0,860,1512,968,2480:14,11,16,20 +chrX 4820846 . T . . END=4821928 GT:DP:GQ:MIN_DP:PL 0/0:53:69:53:0,69,1179 +chrX 4821929 . GGAGAGAGGGAGAGA G, 890.60 . AS_QUALapprox=|898|0;AS_VarDP=20|25|0;BaseQRankSum=-0.624;DP=47;MQRankSum=-0.850;QUALapprox=898;RAW_GT_COUNT=0,1,0;RAW_MQandDP=168516,47;ReadPosRankSum=0.862;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:20,25,0:45:99:898,0,619,957,695,1652:13,7,12,13 +chrX 4821944 . G . . END=4821968 GT:DP:GQ:MIN_DP:PL 0/0:46:48:46:0,48,990 +chrX 4821969 . A . . END=4821969 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,1137 +chrX 4821970 . G . . END=4821970 GT:DP:GQ:MIN_DP:PL 0/0:42:22:42:0,22,1161 +chrX 4821971 . A . . END=4821971 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,1115 +chrX 4821972 . G . . END=4821972 GT:DP:GQ:MIN_DP:PL 0/0:45:96:45:0,96,1440 +chrX 4821973 . A . . END=4821975 GT:DP:GQ:MIN_DP:PL 0/0:45:0:45:0,0,1128 +chrX 4821976 . G . . END=4821980 GT:DP:GQ:MIN_DP:PL 0/0:43:41:43:0,41,1145 +chrX 4821981 . A . . END=4821981 GT:DP:GQ:MIN_DP:PL 0/0:40:1:40:0,1,1011 +chrX 4821982 . C . . END=4822151 GT:DP:GQ:MIN_DP:PL 0/0:49:53:49:0,53,1033 +chrX 4822152 . A C, 694.64 . AS_QUALapprox=|702|0;AS_VarDP=21|26|0;BaseQRankSum=-0.226;DP=49;MQRankSum=0.000;QUALapprox=702;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=0.193;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:21,26,0:47:99:702,0,532,764,610,1374:8,13,12,14 +chrX 4822153 . A . . END=4823429 GT:DP:GQ:MIN_DP:PL 0/0:54:91:54:0,91,1350 +chrX 4823430 . T G, 639.64 . AS_QUALapprox=|647|0;AS_VarDP=22|25|0;BaseQRankSum=-1.058;DP=48;MQRankSum=-0.895;QUALapprox=647;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172449,48;ReadPosRankSum=1.035;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:22,25,0:47:99:647,0,582,713,657,1371:10,12,9,16 +chrX 4823431 . C . . END=4823901 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,106,1450 +chrX 4823902 . C G, 561.64 . AS_QUALapprox=|569|0;AS_VarDP=29|21|0;BaseQRankSum=-0.203;DP=50;MQRankSum=0.000;QUALapprox=569;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=0.472;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:29,21,0:50:99:569,0,847,657,911,1567:15,14,11,10 +chrX 4823903 . T . . END=4823964 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 4823965 . A G, 657.64 . AS_QUALapprox=|665|0;AS_VarDP=30|26|0;BaseQRankSum=-1.253;DP=60;MQRankSum=0.000;QUALapprox=665;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=-0.797;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:30,26,0:56:99:665,0,834,755,913,1668:16,14,13,13 +chrX 4823966 . T . . END=4824011 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 4824012 . T C, 671.64 . AS_QUALapprox=|679|0;AS_VarDP=42|27|0;BaseQRankSum=0.064;DP=71;MQRankSum=0.000;QUALapprox=679;RAW_GT_COUNT=0,1,0;RAW_MQandDP=255600,71;ReadPosRankSum=0.756;VarDP=69 GT:AD:DP:GQ:PL:SB 0/1:42,27,0:69:99:679,0,1170,805,1251,2056:28,14,13,14 +chrX 4824013 . C . . END=4824433 GT:DP:GQ:MIN_DP:PL 0/0:69:99:69:0,120,1800 +chrX 4824434 . A C, 767.64 . AS_QUALapprox=|775|0;AS_VarDP=27|29|0;BaseQRankSum=0.714;DP=57;MQRankSum=0.000;QUALapprox=775;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-0.623;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:27,29,0:56:99:775,0,701,856,787,1643:13,14,19,10 +chrX 4824435 . C . . END=4825218 GT:DP:GQ:MIN_DP:PL 0/0:55:86:55:0,86,1232 +chrX 4825219 . G A, 1212.64 . AS_QUALapprox=|1220|0;AS_VarDP=28|33|0;BaseQRankSum=2.116;DP=62;MQRankSum=0.000;QUALapprox=1220;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=0.610;VarDP=61 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,33,0:61:99:0|1:4825219_G_A:1220,0,1066,1304,1165,2469:4825219:15,13,12,21 +chrX 4825220 . T . . END=4825238 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 4825239 . A G, 1281.64 . AS_QUALapprox=|1289|0;AS_VarDP=29|34|0;BaseQRankSum=1.460;DP=63;MQRankSum=0.000;QUALapprox=1289;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=-0.511;VarDP=63 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,34,0:63:99:0|1:4825219_G_A:1289,0,1115,1377,1218,2594:4825219:16,13,13,21 +chrX 4825240 . A . . END=4825246 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 4825247 . A G, 1166.64 . AS_QUALapprox=|1174|0;AS_VarDP=29|31|0;BaseQRankSum=0.154;DP=60;MQRankSum=0.000;QUALapprox=1174;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=-1.154;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,31,0:60:99:0|1:4825219_G_A:1174,0,1124,1261,1218,2479:4825219:16,13,12,19 +chrX 4825248 . T . . END=4825367 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,119,1748 +chrX 4825368 . ATATCTATCTATCTATC A, 457.60 . AS_QUALapprox=|465|0;AS_VarDP=29|18|0;BaseQRankSum=0.155;DP=58;MQRankSum=0.000;QUALapprox=465;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-0.234;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:29,18,0:47:99:465,0,1106,552,1161,1713:15,14,11,7 +chrX 4825385 . T . . END=4826000 GT:DP:GQ:MIN_DP:PL 0/0:49:85:49:0,85,1183 +chrX 4826001 . C T, 803.64 . AS_QUALapprox=|811|0;AS_VarDP=27|30|0;BaseQRankSum=-0.744;DP=60;MQRankSum=0.000;QUALapprox=811;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=-0.671;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:27,30,0:57:99:811,0,705,891,795,1686:19,8,18,12 +chrX 4826002 . T . . END=4826726 GT:DP:GQ:MIN_DP:PL 0/0:57:73:57:0,73,1106 +chrX 4826727 . C G, 588.64 . AS_QUALapprox=|596|0;AS_VarDP=20|24|0;BaseQRankSum=-1.674;DP=46;MQRankSum=0.000;QUALapprox=596;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=0.448;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:20,24,0:44:99:596,0,533,656,605,1261:11,9,9,15 +chrX 4826728 . A . . END=4827857 GT:DP:GQ:MIN_DP:PL 0/0:48:83:48:0,83,1296 +chrX 4827858 . C T, 622.64 . AS_QUALapprox=|630|0;AS_VarDP=27|23|0;BaseQRankSum=1.035;DP=52;MQRankSum=0.000;QUALapprox=630;RAW_GT_COUNT=0,1,0;RAW_MQandDP=186304,52;ReadPosRankSum=0.029;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:27,23,0:50:99:630,0,723,710,792,1503:20,7,16,7 +chrX 4827859 . G . . END=4829179 GT:DP:GQ:MIN_DP:PL 0/0:55:66:55:0,66,1097 +chrX 4829180 . T C, 494.04 . AS_QUALapprox=|556|0;AS_VarDP=21|20|0;BaseQRankSum=0.465;DP=45;MQRankSum=0.000;QUALapprox=556;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=1.705;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:21,20,0:41:99:556,0,563,560,634,1231:13,7,9,7 +chrX 4829181 . A . . END=4834130 GT:DP:GQ:MIN_DP:PL 0/0:37:29:26:0,29,725 +chrX 4834131 . A . . END=4834131 GT:DP:GQ:MIN_DP:PL 0/0:27:0:27:0,0,561 +chrX 4834132 . G . . END=4834134 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,108,1620 +chrX 4834135 . T . . END=4834135 GT:DP:GQ:MIN_DP:PL 0/0:29:2:29:0,2,423 +chrX 4834136 . G . . END=4834138 GT:DP:GQ:MIN_DP:PL 0/0:39:92:39:0,92,1024 +chrX 4834139 . A . . END=4834139 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,665 +chrX 4834140 . G . . END=4834497 GT:DP:GQ:MIN_DP:PL 0/0:42:79:42:0,79,1116 +chrX 4834498 . G A, 378.64 . AS_QUALapprox=|386|0;AS_VarDP=27|15|0;BaseQRankSum=1.367;DP=43;MQRankSum=0.000;QUALapprox=386;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154800,43;ReadPosRankSum=1.002;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:27,15,0:42:99:386,0,737,466,782,1249:12,15,7,8 +chrX 4834499 . T . . END=4834803 GT:DP:GQ:MIN_DP:PL 0/0:50:92:50:0,92,1261 +chrX 4834804 . G A, 584.64 . AS_QUALapprox=|592|0;AS_VarDP=25|25|0;BaseQRankSum=-2.729;DP=50;MQRankSum=0.000;QUALapprox=592;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=1.145;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:25,25,0:50:99:592,0,684,667,759,1426:9,16,11,14 +chrX 4834805 . G . . END=4835116 GT:DP:GQ:MIN_DP:PL 0/0:45:82:45:0,82,1148 +chrX 4835117 . G T, 188.64 . AS_QUALapprox=|196|0;AS_VarDP=30|9|0;BaseQRankSum=1.322;DP=40;MQRankSum=0.000;QUALapprox=196;RAW_GT_COUNT=0,1,0;RAW_MQandDP=144000,40;ReadPosRankSum=1.101;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:30,9,0:39:99:196,0,861,286,888,1174:15,15,3,6 +chrX 4835118 . A . . END=4837376 GT:DP:GQ:MIN_DP:PL 0/0:48:59:48:0,59,1043 +chrX 4837377 . A T, 752.64 . AS_QUALapprox=|760|0;AS_VarDP=20|28|0;BaseQRankSum=0.534;DP=49;MQRankSum=0.000;QUALapprox=760;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=0.628;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:20,28,0:48:99:760,0,501,820,585,1405:11,9,14,14 +chrX 4837378 . A . . END=4839144 GT:DP:GQ:MIN_DP:PL 0/0:56:47:56:0,47,1364 +chrX 4839145 . C T, 620.64 . AS_QUALapprox=|628|0;AS_VarDP=22|17|0;BaseQRankSum=2.755;DP=40;MQRankSum=0.000;QUALapprox=628;RAW_GT_COUNT=0,1,0;RAW_MQandDP=144000,40;ReadPosRankSum=1.417;VarDP=39 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,17,0:39:99:0|1:4839145_C_T:628,0,805,693,856,1550:4839145:6,16,9,8 +chrX 4839146 . G . . END=4839159 GT:DP:GQ:MIN_DP:PL 0/0:38:87:38:0,87,1232 +chrX 4839160 . A G, 559.64 . AS_QUALapprox=|567|0;AS_VarDP=21|15|0;BaseQRankSum=-0.272;DP=37;MQRankSum=0.000;QUALapprox=567;RAW_GT_COUNT=0,1,0;RAW_MQandDP=133200,37;ReadPosRankSum=0.484;VarDP=36 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,15,0:36:99:0|1:4839145_C_T:567,0,803,630,848,1478:4839145:6,15,7,8 +chrX 4839161 . T . . END=4840464 GT:DP:GQ:MIN_DP:PL 0/0:50:90:50:0,90,1121 +chrX 4840465 . G A, 544.64 . AS_QUALapprox=|552|0;AS_VarDP=29|22|0;BaseQRankSum=0.183;DP=53;MQRankSum=0.000;QUALapprox=552;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=-0.723;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:29,22,0:51:99:552,0,745,639,811,1450:12,17,12,10 +chrX 4840466 . A . . END=4841827 GT:DP:GQ:MIN_DP:PL 0/0:25:20:23:0,20,671 +chrX 4841828 . CATATATAT C,CATAT, 406.60 . AS_QUALapprox=|140|414|0;AS_VarDP=2|0|6|0;BaseQRankSum=0.000;DP=25;MQRankSum=1.150;QUALapprox=414;RAW_GT_COUNT=0,1,0;RAW_MQandDP=86801,25;ReadPosRankSum=0.792;VarDP=8 GT:AD:DP:GQ:PL:SB 0/2:2,0,6,0:8:27:414,274,703,0,79,27,371,547,95,593:1,1,5,1 +chrX 4841835 . A *,G, 170.04 . AS_QUALapprox=|0|275|0;AS_VarDP=12|0|5|0;BaseQRankSum=0.071;DP=24;MQRankSum=1.035;QUALapprox=275;RAW_GT_COUNT=0,1,0;RAW_MQandDP=83201,24;ReadPosRankSum=2.215;VarDP=17 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|2:12,0,5,0:17:99:0|1:4841835_A_*:275,150,677,0,385,354,244,630,399,687:4841835:6,6,4,1 +chrX 4841837 . A . . END=4841882 GT:DP:GQ:MIN_DP:PL 0/0:26:27:23:0,27,405 +chrX 4841883 . C . . END=4841883 GT:DP:GQ:MIN_DP:PL 0/0:25:15:25:0,15,639 +chrX 4841884 . A . . END=4842140 GT:DP:GQ:MIN_DP:PL 0/0:25:34:21:0,34,571 +chrX 4842141 . G A, 359.64 . AS_QUALapprox=|367|0;AS_VarDP=28|15|0;BaseQRankSum=1.532;DP=43;MQRankSum=0.000;QUALapprox=367;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154800,43;ReadPosRankSum=0.969;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:28,15,0:43:99:367,0,764,452,809,1261:19,9,8,7 +chrX 4842142 . A . . END=4842807 GT:DP:GQ:MIN_DP:PL 0/0:54:84:54:0,84,1256 +chrX 4842808 . T C, 1989.06 . AS_QUALapprox=|2003|0;AS_VarDP=1|65|0;BaseQRankSum=1.422;DP=69;MQRankSum=0.000;QUALapprox=2003;RAW_GT_COUNT=0,0,1;RAW_MQandDP=248400,69;ReadPosRankSum=0.420;VarDP=66 GT:AD:DP:GQ:PL:SB 1/1:1,65,0:66:99:2003,173,0,2006,194,2028:0,1,33,32 +chrX 4842809 . C . . END=4844554 GT:DP:GQ:MIN_DP:PL 0/0:53:80:53:0,80,1315 +chrX 4844555 . C A, 633.64 . AS_QUALapprox=|641|0;AS_VarDP=29|26|0;BaseQRankSum=-1.540;DP=59;MQRankSum=0.000;QUALapprox=641;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-1.366;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:29,26,0:55:99:641,0,803,728,881,1609:15,14,14,12 +chrX 4844556 . C . . END=4845326 GT:DP:GQ:MIN_DP:PL 0/0:49:91:49:0,91,1294 +chrX 4845327 . C A, 938.64 . AS_QUALapprox=|946|0;AS_VarDP=27|35|0;BaseQRankSum=0.876;DP=65;MQRankSum=0.000;QUALapprox=946;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=-0.007;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:27,35,0:62:99:946,0,658,1027,762,1789:11,16,19,16 +chrX 4845328 . A . . END=4845894 GT:DP:GQ:MIN_DP:PL 0/0:42:65:42:0,65,1111 +chrX 4845895 . A G, 596.64 . AS_QUALapprox=|604|0;AS_VarDP=18|24|0;BaseQRankSum=-1.337;DP=43;MQRankSum=0.000;QUALapprox=604;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154800,43;ReadPosRankSum=0.903;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:18,24,0:42:99:604,0,455,657,527,1184:10,8,10,14 +chrX 4845896 . T . . END=4846272 GT:DP:GQ:MIN_DP:PL 0/0:46:80:46:0,80,1235 +chrX 4846273 . G C, 876.64 . AS_QUALapprox=|884|0;AS_VarDP=16|30|0;BaseQRankSum=-0.027;DP=48;MQRankSum=0.000;QUALapprox=884;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=-0.427;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:16,30,0:46:99:884,0,407,932,497,1429:13,3,20,10 +chrX 4846274 . A . . END=4846312 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,116,1483 +chrX 4846313 . C T, 794.64 . AS_QUALapprox=|802|0;AS_VarDP=19|28|0;BaseQRankSum=-0.628;DP=48;MQRankSum=0.000;QUALapprox=802;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=1.052;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:19,28,0:47:99:802,0,509,859,593,1453:15,4,17,11 +chrX 4846314 . C . . END=4846516 GT:DP:GQ:MIN_DP:PL 0/0:50:89:50:0,89,1410 +chrX 4846517 . G A, 758.64 . AS_QUALapprox=|766|0;AS_VarDP=17|27|0;BaseQRankSum=0.266;DP=46;MQRankSum=0.000;QUALapprox=766;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=-1.145;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:17,27,0:44:99:766,0,428,817,510,1327:9,8,13,14 +chrX 4846518 . T . . END=4847072 GT:DP:GQ:MIN_DP:PL 0/0:47:61:47:0,61,949 +chrX 4847073 . T C, 401.64 . AS_QUALapprox=|409|0;AS_VarDP=18|16|0;BaseQRankSum=-0.645;DP=36;MQRankSum=0.000;QUALapprox=409;RAW_GT_COUNT=0,1,0;RAW_MQandDP=129600,36;ReadPosRankSum=-1.347;VarDP=34 GT:AD:DP:GQ:PL:SB 0/1:18,16,0:34:99:409,0,504,463,552,1015:9,9,8,8 +chrX 4847074 . C . . END=4847735 GT:DP:GQ:MIN_DP:PL 0/0:51:79:51:0,79,1250 +chrX 4847736 . A G, 490.64 . AS_QUALapprox=|498|0;AS_VarDP=20|19|0;BaseQRankSum=-1.794;DP=42;MQRankSum=-0.975;QUALapprox=498;RAW_GT_COUNT=0,1,0;RAW_MQandDP=149904,42;ReadPosRankSum=0.886;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:20,19,0:39:99:498,0,578,559,635,1194:14,6,12,7 +chrX 4847737 . T . . END=4848142 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,105,1415 +chrX 4848143 . T TG, 2149.03 . AS_QUALapprox=|2163|0;AS_VarDP=0|58|0;DP=59;QUALapprox=2163;RAW_GT_COUNT=0,0,1;RAW_MQandDP=209650,59;VarDP=58 GT:AD:DP:GQ:PL:SB 1/1:0,58,0:58:99:2163,175,0,2163,175,2163:0,0,29,29 +chrX 4848144 . G . . END=4848390 GT:DP:GQ:MIN_DP:PL 0/0:33:25:31:0,25,780 +chrX 4848391 . T . . END=4848391 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,556 +chrX 4848392 . G . . END=4848397 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,119,1168 +chrX 4848398 . T . . END=4848399 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,454 +chrX 4848400 . G . . END=4848404 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,113,1078 +chrX 4848405 . C . . END=4848406 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,414 +chrX 4848407 . G . . END=4848773 GT:DP:GQ:MIN_DP:PL 0/0:58:72:58:0,72,1127 +chrX 4848774 . C CAT, 701.60 . AS_QUALapprox=|709|0;AS_VarDP=24|23|0;BaseQRankSum=1.171;DP=52;MQRankSum=0.000;QUALapprox=709;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=1.927;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:24,23,0:47:99:709,0,771,782,840,1621:12,12,16,7 +chrX 4848775 . A . . END=4849298 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,109,1488 +chrX 4849299 . A G, 823.64 . AS_QUALapprox=|831|0;AS_VarDP=23|31|0;BaseQRankSum=-0.412;DP=58;MQRankSum=0.000;QUALapprox=831;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=1.514;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:23,31,0:54:99:831,0,583,900,676,1575:8,15,14,17 +chrX 4849300 . T . . END=4849348 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 4849349 . C T, 785.64 . AS_QUALapprox=|793|0;AS_VarDP=25|30|0;BaseQRankSum=0.171;DP=57;MQRankSum=0.000;QUALapprox=793;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-1.412;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:25,30,0:55:99:793,0,615,868,704,1572:7,18,17,13 +chrX 4849350 . A . . END=4850120 GT:DP:GQ:MIN_DP:PL 0/0:56:66:56:0,66,1087 +chrX 4850121 . C A, 518.64 . AS_QUALapprox=|526|0;AS_VarDP=23|20|0;BaseQRankSum=-1.034;DP=45;MQRankSum=0.000;QUALapprox=526;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=-0.804;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:23,20,0:43:99:526,0,650,595,710,1305:16,7,13,7 +chrX 4850122 . C . . END=4851652 GT:DP:GQ:MIN_DP:PL 0/0:52:82:52:0,82,1226 +chrX 4851653 . T C, 631.64 . AS_QUALapprox=|639|0;AS_VarDP=41|25|0;BaseQRankSum=0.035;DP=67;MQRankSum=0.000;QUALapprox=639;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=0.291;VarDP=66 GT:AD:DP:GQ:PL:SB 0/1:41,25,0:66:99:639,0,1176,762,1251,2013:27,14,15,10 +chrX 4851654 . C . . END=4852223 GT:DP:GQ:MIN_DP:PL 0/0:67:54:67:0,54,1732 +chrX 4852224 . C . . END=4852224 GT:DP:GQ:MIN_DP:PL 0/0:71:0:71:0,0,1820 +chrX 4852225 . A . . END=4852226 GT:DP:GQ:MIN_DP:PL 0/0:72:25:71:0,25,1931 +chrX 4852227 . C T, 734.64 . AS_QUALapprox=|742|0;AS_VarDP=29|28|0;BaseQRankSum=1.155;DP=61;MQRankSum=-1.774;QUALapprox=742;RAW_GT_COUNT=0,1,0;RAW_MQandDP=215249,61;ReadPosRankSum=0.679;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:29,28,0:57:99:742,0,722,829,806,1635:13,16,15,13 +chrX 4852228 . G . . END=4852242 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 4852243 . A ATATTTTATTTTATTTTATTT, 890.60 . AS_QUALapprox=|898|0;AS_VarDP=21|24|0;BaseQRankSum=0.896;DP=60;MQRankSum=-1.913;QUALapprox=898;RAW_GT_COUNT=0,1,0;RAW_MQandDP=209649,60;ReadPosRankSum=-0.285;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:21,24,0:45:99:898,0,736,964,808,1772:9,12,16,8 +chrX 4852244 . T . . END=4852284 GT:DP:GQ:MIN_DP:PL 0/0:57:93:57:0,93,1300 +chrX 4852285 . G . . END=4852285 GT:DP:GQ:MIN_DP:PL 0/0:53:0:53:0,0,928 +chrX 4852286 . A . . END=4852286 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 4852287 . G . . END=4852290 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,841 +chrX 4852291 . A . . END=4852291 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 4852292 . G . . END=4852293 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,880 +chrX 4852294 . T . . END=4852294 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,114,1710 +chrX 4852295 . C . . END=4852295 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,918 +chrX 4852296 . T . . END=4852296 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,114,1710 +chrX 4852297 . T . . END=4852297 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1276 +chrX 4852298 . T . . END=4852300 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,117,1755 +chrX 4852301 . C . . END=4852303 GT:DP:GQ:MIN_DP:PL 0/0:51:0:51:0,0,1146 +chrX 4852304 . T . . END=4853182 GT:DP:GQ:MIN_DP:PL 0/0:52:39:49:0,39,1400 +chrX 4853183 . G A, 847.64 . AS_QUALapprox=|855|0;AS_VarDP=30|31|0;BaseQRankSum=1.145;DP=61;MQRankSum=0.000;QUALapprox=855;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=1.616;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:30,31,0:61:99:855,0,758,944,851,1796:11,19,23,8 +chrX 4853184 . G . . END=4853580 GT:DP:GQ:MIN_DP:PL 0/0:55:98:55:0,98,1425 +chrX 4853581 . G C, 658.64 . AS_QUALapprox=|666|0;AS_VarDP=29|27|0;BaseQRankSum=-1.881;DP=57;MQRankSum=0.000;QUALapprox=666;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=0.180;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:29,27,0:56:99:666,0,781,752,861,1614:9,20,13,14 +chrX 4853582 . A . . END=4854151 GT:DP:GQ:MIN_DP:PL 0/0:60:98:60:0,98,1251 +chrX 4854152 . T C, 826.64 . AS_QUALapprox=|834|0;AS_VarDP=26|30|0;BaseQRankSum=-0.659;DP=59;MQRankSum=0.000;QUALapprox=834;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-0.781;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:26,30,0:56:99:834,0,715,912,806,1718:16,10,15,15 +chrX 4854153 . A . . END=4854289 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,102,1762 +chrX 4854290 . T TG, 986.60 . AS_QUALapprox=|994|0;AS_VarDP=24|31|0;BaseQRankSum=0.403;DP=57;MQRankSum=0.000;QUALapprox=994;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=0.382;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:24,31,0:55:99:994,0,729,1066,822,1888:12,12,15,16 +chrX 4854291 . G . . END=4854438 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 4854439 . T A, 702.64 . AS_QUALapprox=|710|0;AS_VarDP=33|28|0;BaseQRankSum=-3.255;DP=62;MQRankSum=0.000;QUALapprox=710;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=0.195;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:33,28,0:61:99:710,0,962,809,1046,1855:15,18,13,15 +chrX 4854440 . G . . END=4854452 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 4854453 . T G, 929.64 . AS_QUALapprox=|937|0;AS_VarDP=29|33|0;BaseQRankSum=3.122;DP=62;MQRankSum=0.000;QUALapprox=937;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=0.861;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:29,33,0:62:99:937,0,692,1023,791,1814:12,17,17,16 +chrX 4854454 . A . . END=4854465 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 4854466 . C G, 864.64 . AS_QUALapprox=|872|0;AS_VarDP=28|32|0;BaseQRankSum=1.993;DP=62;MQRankSum=0.000;QUALapprox=872;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=0.178;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:28,32,0:60:99:872,0,703,956,799,1755:12,16,16,16 +chrX 4854467 . A . . END=4855000 GT:DP:GQ:MIN_DP:PL 0/0:52:85:52:0,85,1396 +chrX 4855001 . A G, 944.64 . AS_QUALapprox=|952|0;AS_VarDP=27|36|0;BaseQRankSum=-1.431;DP=63;MQRankSum=0.000;QUALapprox=952;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=0.146;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:27,36,0:63:99:952,0,708,1033,816,1849:13,14,20,16 +chrX 4855002 . G . . END=4855341 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,120,1800 +chrX 4855342 . T C, 846.64 . AS_QUALapprox=|854|0;AS_VarDP=30|34|0;BaseQRankSum=-1.601;DP=66;MQRankSum=0.000;QUALapprox=854;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=-1.810;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:30,34,0:64:99:854,0,786,944,888,1832:10,20,18,16 +chrX 4855343 . T . . END=4855585 GT:DP:GQ:MIN_DP:PL 0/0:47:76:47:0,76,1351 +chrX 4855586 . C CAG, 880.60 . AS_QUALapprox=|888|0;AS_VarDP=25|23|0;BaseQRankSum=-0.970;DP=49;MQRankSum=0.000;QUALapprox=888;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=0.692;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:25,23,0:48:99:888,0,957,963,1027,1990:14,11,11,12 +chrX 4855587 . A . . END=4855836 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,116,1484 +chrX 4855837 . C T, 586.64 . AS_QUALapprox=|594|0;AS_VarDP=26|24|0;BaseQRankSum=-2.113;DP=53;MQRankSum=0.000;QUALapprox=594;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=-1.340;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:26,24,0:50:99:594,0,723,672,795,1467:13,13,12,12 +chrX 4855838 . A . . END=4856045 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,112,1513 +chrX 4856046 . G A, 818.64 . AS_QUALapprox=|826|0;AS_VarDP=28|31|0;BaseQRankSum=-0.863;DP=59;MQRankSum=0.000;QUALapprox=826;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-1.238;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:28,31,0:59:99:826,0,752,910,844,1754:16,12,15,16 +chrX 4856047 . G . . END=4857077 GT:DP:GQ:MIN_DP:PL 0/0:67:99:67:0,119,1488 +chrX 4857078 . T C, 928.64 . AS_QUALapprox=|936|0;AS_VarDP=40|34|0;BaseQRankSum=1.197;DP=80;MQRankSum=0.000;QUALapprox=936;RAW_GT_COUNT=0,1,0;RAW_MQandDP=288000,80;ReadPosRankSum=0.201;VarDP=74 GT:AD:DP:GQ:PL:SB 0/1:40,34,0:74:99:936,0,1099,1055,1200,2255:17,23,15,19 +chrX 4857079 . A . . END=4858620 GT:DP:GQ:MIN_DP:PL 0/0:59:93:59:0,93,1278 +chrX 4858621 . A C, 738.64 . AS_QUALapprox=|746|0;AS_VarDP=35|21|0;BaseQRankSum=0.244;DP=57;MQRankSum=0.000;QUALapprox=746;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=2.077;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:35,21,0:56:99:0|1:4858621_A_C:746,0,1270,851,1333,2184:4858621:14,21,8,13 +chrX 4858622 . C . . END=4858636 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 4858637 . G GTA, 754.60 . AS_QUALapprox=|762|0;AS_VarDP=32|21|0;BaseQRankSum=0.241;DP=54;MQRankSum=0.000;QUALapprox=762;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=1.110;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:32,21,0:53:99:0|1:4858621_A_C:762,0,1197,859,1260,2119:4858621:16,16,8,13 +chrX 4858638 . T . . END=4858671 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,102,1275 +chrX 4858672 . AAT A, 794.60 . AS_QUALapprox=|802|0;AS_VarDP=12|23|0;BaseQRankSum=0.400;DP=41;MQRankSum=0.000;QUALapprox=802;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147600,41;ReadPosRankSum=1.112;VarDP=35 GT:AD:DP:GQ:PL:SB 0/1:12,23,0:35:99:802,0,435,838,504,1342:4,8,13,10 +chrX 4858675 . A . . END=4858679 GT:DP:GQ:MIN_DP:PL 0/0:35:91:35:0,91,1148 +chrX 4858680 . T C, 288.64 . AS_QUALapprox=|296|0;AS_VarDP=25|12|0;BaseQRankSum=0.421;DP=37;MQRankSum=0.000;QUALapprox=296;RAW_GT_COUNT=0,1,0;RAW_MQandDP=133200,37;ReadPosRankSum=-1.314;VarDP=37 GT:AD:DP:GQ:PL:SB 0/1:25,12,0:37:99:296,0,964,371,1000,1371:13,12,4,8 +chrX 4858681 . A . . END=4858898 GT:DP:GQ:MIN_DP:PL 0/0:37:44:30:0,44,802 +chrX 4858899 . T C, 567.64 . AS_QUALapprox=|575|0;AS_VarDP=33|25|0;BaseQRankSum=-2.107;DP=60;MQRankSum=0.000;QUALapprox=575;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=0.173;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:33,25,0:58:99:575,0,919,674,993,1667:16,17,19,6 +chrX 4858900 . A . . END=4859006 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 4859007 . CACACATATAT C, 1165.60 . AS_QUALapprox=|1173|0;AS_VarDP=22|30|0;BaseQRankSum=-0.550;DP=65;MQRankSum=0.000;QUALapprox=1173;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234000,65;ReadPosRankSum=1.034;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:22,30,0:52:99:1173,0,822,1240,913,2153:11,11,19,11 +chrX 4859018 . A . . END=4860494 GT:DP:GQ:MIN_DP:PL 0/0:60:58:60:0,58,1539 +chrX 4860495 . A AATG, 1047.60 . AS_QUALapprox=|1055|0;AS_VarDP=26|27|0;BaseQRankSum=0.666;DP=55;MQRankSum=0.000;QUALapprox=1055;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=1.602;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:26,27,0:53:99:1055,0,999,1134,1080,2214:14,12,10,17 +chrX 4860496 . A . . END=4860528 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,111,1665 +chrX 4860529 . CTTTATTTA C, 376.60 . AS_QUALapprox=|384|0;AS_VarDP=15|12|0;BaseQRankSum=1.786;DP=55;MQRankSum=0.000;QUALapprox=384;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-1.171;VarDP=27 GT:AD:DP:GQ:PL:SB 0/1:15,12,0:27:99:384,0,592,430,630,1059:14,1,8,4 +chrX 4860538 . T . . END=4860724 GT:DP:GQ:MIN_DP:PL 0/0:45:25:43:0,25,1170 +chrX 4860725 . TTGTG T,TTGTGTG, 1109.02 . AS_QUALapprox=|547|584|0;AS_VarDP=1|16|22|0;BaseQRankSum=-0.118;DP=54;MQRankSum=0.000;QUALapprox=1126;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194281,54;ReadPosRankSum=-0.319;VarDP=39 GT:AD:DP:GQ:PL:SB 1/2:1,16,22,0:39:99:1126,579,897,580,0,542,1184,800,616,1359:0,1,16,22 +chrX 4860730 . T . . END=4860760 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,105,1575 +chrX 4860761 . A . . END=4860761 GT:DP:GQ:MIN_DP:PL 0/0:56:0:56:0,0,1459 +chrX 4860762 . T . . END=4860913 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,102,1702 +chrX 4860914 . C A, 788.64 . AS_QUALapprox=|796|0;AS_VarDP=29|31|0;BaseQRankSum=-0.196;DP=62;MQRankSum=-0.934;QUALapprox=796;RAW_GT_COUNT=0,1,0;RAW_MQandDP=222516,62;ReadPosRankSum=-1.672;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:29,31,0:60:99:796,0,753,882,845,1728:11,18,16,15 +chrX 4860915 . A . . END=4860941 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 4860942 . C T, 688.64 . AS_QUALapprox=|696|0;AS_VarDP=30|26|0;BaseQRankSum=0.844;DP=57;MQRankSum=0.000;QUALapprox=696;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-0.230;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:30,26,0:56:99:696,0,775,785,853,1638:11,19,17,9 +chrX 4860943 . A . . END=4862138 GT:DP:GQ:MIN_DP:PL 0/0:56:45:56:0,45,1296 +chrX 4862139 . G A, 622.64 . AS_QUALapprox=|630|0;AS_VarDP=35|25|0;BaseQRankSum=-0.442;DP=66;MQRankSum=0.000;QUALapprox=630;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=0.225;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:35,25,0:60:99:630,0,931,734,1006,1740:17,18,14,11 +chrX 4862140 . C . . END=4862544 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,100,1450 +chrX 4862545 . C T, 614.64 . AS_QUALapprox=|622|0;AS_VarDP=28|23|0;BaseQRankSum=0.812;DP=54;MQRankSum=0.000;QUALapprox=622;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=0.919;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:28,23,0:51:99:622,0,774,706,843,1549:17,11,10,13 +chrX 4862546 . A . . END=4863503 GT:DP:GQ:MIN_DP:PL 0/0:45:65:45:0,65,1096 +chrX 4863504 . C T, 549.64 . AS_QUALapprox=|557|0;AS_VarDP=26|23|0;BaseQRankSum=-0.109;DP=50;MQRankSum=0.000;QUALapprox=557;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=-0.261;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:26,23,0:49:99:557,0,667,635,735,1371:10,16,12,11 +chrX 4863505 . G . . END=4863758 GT:DP:GQ:MIN_DP:PL 0/0:38:56:38:0,56,1027 +chrX 4863759 . A G, 388.64 . AS_QUALapprox=|396|0;AS_VarDP=23|17|0;BaseQRankSum=-0.703;DP=40;MQRankSum=0.000;QUALapprox=396;RAW_GT_COUNT=0,1,0;RAW_MQandDP=144000,40;ReadPosRankSum=1.451;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:23,17,0:40:99:396,0,620,465,670,1135:13,10,10,7 +chrX 4863760 . C . . END=4864503 GT:DP:GQ:MIN_DP:PL 0/0:44:76:44:0,76,1073 +chrX 4864504 . GTATATATGTCCATATATAAATATATGAATATATAAATTTATATGTTCATATATAAATATATGAACATATAAATT G, 803.60 . AS_QUALapprox=|811|0;AS_VarDP=33|24|0;BaseQRankSum=0.404;DP=66;MQRankSum=-1.648;QUALapprox=811;RAW_GT_COUNT=0,1,0;RAW_MQandDP=234905,66;ReadPosRankSum=1.853;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:33,24,0:57:99:811,0,1262,910,1340,2249:16,17,17,7 +chrX 4864579 . T . . END=4864638 GT:DP:GQ:MIN_DP:PL 0/0:48:72:48:0,72,1080 +chrX 4864639 . C CATATGT, 1912.03 . AS_QUALapprox=|1926|0;AS_VarDP=0|44|0;DP=48;QUALapprox=1926;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=44 GT:AD:DP:GQ:PL:SB 1/1:0,44,0:44:99:1926,132,0,1926,132,1926:0,0,25,19 +chrX 4864640 . A . . END=4864757 GT:DP:GQ:MIN_DP:PL 0/0:44:28:44:0,28,1244 +chrX 4864758 . T TTATA, 1056.60 . AS_QUALapprox=|1064|0;AS_VarDP=26|29|0;BaseQRankSum=-0.747;DP=60;MQRankSum=0.000;QUALapprox=1064;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=-0.759;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:26,29,0:55:99:1064,0,1005,1143,1092,2235:17,9,14,15 +chrX 4864759 . T . . END=4864762 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 4864763 . C . . END=4864763 GT:DP:GQ:MIN_DP:PL 0/0:56:10:56:0,10,1449 +chrX 4864764 . A . . END=4865204 GT:DP:GQ:MIN_DP:PL 0/0:54:71:54:0,71,1295 +chrX 4865205 . A C, 803.64 . AS_QUALapprox=|811|0;AS_VarDP=27|33|0;BaseQRankSum=-1.406;DP=62;MQRankSum=0.000;QUALapprox=811;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=-1.791;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:27,33,0:60:99:811,0,708,892,806,1698:14,13,19,14 +chrX 4865206 . A . . END=4865280 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,120,1800 +chrX 4865281 . CATAT C, 694.60 . AS_QUALapprox=|702|0;AS_VarDP=32|19|0;BaseQRankSum=1.044;DP=53;MQRankSum=0.000;QUALapprox=702;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=0.633;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:32,19,0:51:99:702,0,1275,798,1332,2130:19,13,8,11 +chrX 4865286 . A . . END=4865353 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,119,1738 +chrX 4865354 . T C, 754.64 . AS_QUALapprox=|762|0;AS_VarDP=28|29|0;BaseQRankSum=-1.731;DP=59;MQRankSum=0.000;QUALapprox=762;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=0.447;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:28,29,0:57:99:762,0,778,847,865,1712:15,13,17,12 +chrX 4865355 . T . . END=4865566 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 4865567 . A AT, 732.60 . AS_QUALapprox=|740|0;AS_VarDP=23|29|0;BaseQRankSum=-1.192;DP=59;MQRankSum=0.000;QUALapprox=740;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=0.424;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:23,29,0:52:99:740,0,561,810,648,1457:9,14,11,18 +chrX 4865568 . T . . END=4865936 GT:DP:GQ:MIN_DP:PL 0/0:53:84:53:0,84,1151 +chrX 4865937 . T C, 767.64 . AS_QUALapprox=|775|0;AS_VarDP=16|30|0;BaseQRankSum=-2.049;DP=47;MQRankSum=0.000;QUALapprox=775;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=-0.496;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:16,30,0:46:99:775,0,420,823,508,1332:5,11,13,17 +chrX 4865938 . G . . END=4866054 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,100,1683 +chrX 4866055 . G GTCA, 675.60 . AS_QUALapprox=|683|0;AS_VarDP=30|19|0;BaseQRankSum=-1.568;DP=52;MQRankSum=0.000;QUALapprox=683;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=0.123;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:30,19,0:49:99:683,0,1203,773,1260,2033:18,12,9,10 +chrX 4866056 . T . . END=4866763 GT:DP:GQ:MIN_DP:PL 0/0:57:85:57:0,85,1403 +chrX 4866764 . T TA, 627.60 . AS_QUALapprox=|635|0;AS_VarDP=24|24|0;BaseQRankSum=-2.089;DP=54;MQRankSum=0.000;QUALapprox=635;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=1.351;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:24,24,0:48:99:635,0,640,707,712,1419:11,13,9,15 +chrX 4866765 . A . . END=4866909 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 4866910 . C CA, 493.60 . AS_QUALapprox=|501|0;AS_VarDP=20|24|0;BaseQRankSum=-0.752;DP=56;MQRankSum=0.000;QUALapprox=501;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=0.142;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:20,24,0:44:99:501,0,401,561,473,1034:15,5,15,9 +chrX 4866911 . A . . END=4867316 GT:DP:GQ:MIN_DP:PL 0/0:47:50:47:0,50,968 +chrX 4867317 . AAT A, 498.60 . AS_QUALapprox=|506|0;AS_VarDP=19|18|0;BaseQRankSum=-0.852;DP=42;MQRankSum=-0.973;QUALapprox=506;RAW_GT_COUNT=0,1,0;RAW_MQandDP=148969,42;ReadPosRankSum=0.228;VarDP=37 GT:AD:DP:GQ:PL:SB 0/1:19,18,0:37:99:506,0,578,563,631,1195:11,8,8,10 +chrX 4867320 . A . . END=4867399 GT:DP:GQ:MIN_DP:PL 0/0:47:71:47:0,71,1118 +chrX 4867400 . TATATATATCAAATATATATCAAATATATATCATATATATCAAATATATATCAAATATATATC TATATATATCAAATATATATCATATATATCAAATATATATCAAATATATATC,T, 208.60 . AS_QUALapprox=|216|89|0;AS_VarDP=32|3|0|0;BaseQRankSum=-1.382;DP=51;MQRankSum=-1.638;QUALapprox=216;RAW_GT_COUNT=0,1,0;RAW_MQandDP=179006,51;ReadPosRankSum=0.202;VarDP=35 GT:AD:DP:GQ:PL:SB 0/1:32,3,0,0:35:99:216,0,1297,127,1309,1440,227,1325,1455,1539:13,19,2,1 +chrX 4867444 . TATATATCAAATATATATC T,*, 156.04 . AS_QUALapprox=|219|0|0;AS_VarDP=29|3|0|0;BaseQRankSum=0.875;DP=38;MQRankSum=-1.534;QUALapprox=219;RAW_GT_COUNT=0,1,0;RAW_MQandDP=132206,38;ReadPosRankSum=1.311;VarDP=32 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,3,0,0:32:99:0|1:4867444_TATATATCAAATATATATC_T:219,0,1188,127,1199,1329,224,1213,1342,1424:4867444:12,17,2,1 +chrX 4867463 . A . . END=4867481 GT:DP:GQ:MIN_DP:PL 0/0:36:66:34:0,66,963 +chrX 4867482 . CATATATATCAAAT C, 16.60 . AS_QUALapprox=|24|0;AS_VarDP=34|3|0;BaseQRankSum=-0.149;DP=44;MQRankSum=-2.200;QUALapprox=24;RAW_GT_COUNT=0,1,0;RAW_MQandDP=153614,44;ReadPosRankSum=0.874;VarDP=37 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:34,3,0:37:24:0|1:4867444_TATATATCAAATATATATC_T:24,0,1412,127,1422,1549:4867444:12,22,2,1 +chrX 4867496 . A . . END=4871987 GT:DP:GQ:MIN_DP:PL 0/0:56:45:56:0,45,987 +chrX 4871988 . T C, 855.64 . AS_QUALapprox=|863|0;AS_VarDP=23|32|0;BaseQRankSum=-0.368;DP=58;MQRankSum=0.000;QUALapprox=863;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-1.570;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:23,32,0:55:99:863,0,580,931,676,1607:12,11,19,13 +chrX 4871989 . G . . END=4872813 GT:DP:GQ:MIN_DP:PL 0/0:54:34:51:0,34,1187 +chrX 4872814 . A AT, 859.60 . AS_QUALapprox=|867|0;AS_VarDP=35|26|0;BaseQRankSum=1.913;DP=63;MQRankSum=0.000;QUALapprox=867;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=-0.430;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:35,26,0:61:99:867,0,1225,973,1304,2276:17,18,15,11 +chrX 4872815 . C . . END=4872887 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 4872888 . G A, 617.64 . AS_QUALapprox=|625|0;AS_VarDP=29|24|0;BaseQRankSum=0.063;DP=54;MQRankSum=0.000;QUALapprox=625;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=1.502;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:29,24,0:53:99:625,0,774,711,846,1557:8,21,11,13 +chrX 4872889 . C . . END=4874109 GT:DP:GQ:MIN_DP:PL 0/0:53:94:53:0,94,1259 +chrX 4874110 . C T, 472.64 . AS_QUALapprox=|480|0;AS_VarDP=25|20|0;BaseQRankSum=-2.521;DP=47;MQRankSum=0.000;QUALapprox=480;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=0.286;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:25,20,0:45:99:480,0,714,555,774,1329:15,10,8,12 +chrX 4874111 . G . . END=4874231 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,107,1484 +chrX 4874232 . C CGTGT, 503.60 . AS_QUALapprox=|511|0;AS_VarDP=27|15|0;BaseQRankSum=-1.638;DP=52;MQRankSum=0.000;QUALapprox=511;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=-0.683;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:27,15,0:42:99:511,0,1053,593,1098,1692:17,10,10,5 +chrX 4874233 . G . . END=4874311 GT:DP:GQ:MIN_DP:PL 0/0:46:96:46:0,96,1335 +chrX 4874312 . A G, 360.64 . AS_QUALapprox=|368|0;AS_VarDP=30|16|0;BaseQRankSum=-0.483;DP=51;MQRankSum=0.000;QUALapprox=368;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-0.404;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:30,16,0:46:99:368,0,820,458,868,1326:15,15,8,8 +chrX 4874313 . A . . END=4876029 GT:DP:GQ:MIN_DP:PL 0/0:53:72:53:0,72,1219 +chrX 4876030 . G A, 698.64 . AS_QUALapprox=|706|0;AS_VarDP=21|25|0;BaseQRankSum=2.480;DP=56;MQRankSum=0.000;QUALapprox=706;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-0.750;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:21,25,0:46:99:706,0,522,769,597,1366:10,11,10,15 +chrX 4876031 . T . . END=4876079 GT:DP:GQ:MIN_DP:PL 0/0:39:23:36:0,23,933 +chrX 4876080 . T . . END=4876081 GT:DP:GQ:MIN_DP:PL 0/0:36:0:36:0,0,898 +chrX 4876082 . T . . END=4876083 GT:DP:GQ:MIN_DP:PL 0/0:38:70:38:0,70,1097 +chrX 4876084 . C . . END=4876084 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,864 +chrX 4876085 . C . . END=4876085 GT:DP:GQ:MIN_DP:PL 0/0:40:93:40:0,93,1395 +chrX 4876086 . C . . END=4876089 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,680 +chrX 4876090 . C . . END=4876090 GT:DP:GQ:MIN_DP:PL 0/0:33:40:33:0,40,958 +chrX 4876091 . T . . END=4876092 GT:DP:GQ:MIN_DP:PL 0/0:26:0:26:0,0,448 +chrX 4876093 . C . . END=4876093 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +chrX 4876094 . T . . END=4876094 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,705 +chrX 4876095 . C . . END=4876095 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,102,1530 +chrX 4876096 . T . . END=4876103 GT:DP:GQ:MIN_DP:PL 0/0:23:0:23:0,0,202 +chrX 4876104 . C . . END=4876104 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1350 +chrX 4876105 . C . . END=4876105 GT:DP:GQ:MIN_DP:PL 0/0:29:17:29:0,17,758 +chrX 4876106 . C . . END=4876107 GT:DP:GQ:MIN_DP:PL 0/0:34:84:34:0,84,1260 +chrX 4876108 . T . . END=4876114 GT:DP:GQ:MIN_DP:PL 0/0:27:0:27:0,0,139 +chrX 4876115 . C . . END=4876115 GT:DP:GQ:MIN_DP:PL 0/0:35:72:35:0,72,1080 +chrX 4876116 . C . . END=4876118 GT:DP:GQ:MIN_DP:PL 0/0:21:0:21:0,0,160 +chrX 4876119 . C . . END=4876120 GT:DP:GQ:MIN_DP:PL 0/0:39:75:39:0,75,1125 +chrX 4876121 . C . . END=4876124 GT:DP:GQ:MIN_DP:PL 0/0:21:0:21:0,0,94 +chrX 4876125 . C . . END=4876126 GT:DP:GQ:MIN_DP:PL 0/0:35:75:35:0,75,1125 +chrX 4876127 . T . . END=4876127 GT:DP:GQ:MIN_DP:PL 0/0:20:0:20:0,0,129 +chrX 4876128 . C . . END=4876128 GT:DP:GQ:MIN_DP:PL 0/0:35:66:35:0,66,990 +chrX 4876129 . T . . END=4876134 GT:DP:GQ:MIN_DP:PL 0/0:21:0:21:0,0,94 +chrX 4876135 . C . . END=4876135 GT:DP:GQ:MIN_DP:PL 0/0:34:72:34:0,72,1080 +chrX 4876136 . G . . END=4876137 GT:DP:GQ:MIN_DP:PL 0/0:24:0:24:0,0,138 +chrX 4876138 . C . . END=4876152 GT:DP:GQ:MIN_DP:PL 0/0:33:69:33:0,69,1035 +chrX 4876153 . A . . END=4876153 GT:DP:GQ:MIN_DP:PL 0/0:21:0:21:0,0,381 +chrX 4876154 . C . . END=4876156 GT:DP:GQ:MIN_DP:PL 0/0:32:72:32:0,72,1080 +chrX 4876157 . T . . END=4876159 GT:DP:GQ:MIN_DP:PL 0/0:25:0:25:0,0,581 +chrX 4876160 . C . . END=4878377 GT:DP:GQ:MIN_DP:PL 0/0:36:22:29:0,22,898 +chrX 4878378 . T C, 490.64 . AS_QUALapprox=|498|0;AS_VarDP=24|20|0;BaseQRankSum=-0.388;DP=45;MQRankSum=-0.065;QUALapprox=498;RAW_GT_COUNT=0,1,0;RAW_MQandDP=159316,45;ReadPosRankSum=1.097;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:24,20,0:44:99:498,0,652,570,712,1282:11,13,9,11 +chrX 4878379 . A . . END=4878575 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 4878576 . T C, 591.64 . AS_QUALapprox=|599|0;AS_VarDP=32|23|0;BaseQRankSum=1.210;DP=55;MQRankSum=0.000;QUALapprox=599;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=1.050;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:32,23,0:55:99:599,0,877,696,946,1642:21,11,12,11 +chrX 4878577 . T . . END=4879429 GT:DP:GQ:MIN_DP:PL 0/0:58:56:58:0,56,1017 +chrX 4879430 . T G, 308.64 . AS_QUALapprox=|316|0;AS_VarDP=28|14|0;BaseQRankSum=-0.094;DP=43;MQRankSum=0.000;QUALapprox=316;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154800,43;ReadPosRankSum=0.107;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:28,14,0:42:99:316,0,787,400,829,1229:17,11,10,4 +chrX 4879431 . T . . END=4881093 GT:DP:GQ:MIN_DP:PL 0/0:55:69:55:0,69,1197 +chrX 4881094 . C T, 514.64 . AS_QUALapprox=|522|0;AS_VarDP=25|21|0;BaseQRankSum=-1.600;DP=48;MQRankSum=0.000;QUALapprox=522;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=0.011;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:25,21,0:46:99:522,0,681,597,744,1340:8,17,8,13 +chrX 4881095 . C . . END=4881144 GT:DP:GQ:MIN_DP:PL 0/0:39:93:39:0,93,1187 +chrX 4881145 . C T, 476.64 . AS_QUALapprox=|484|0;AS_VarDP=22|19|0;BaseQRankSum=-1.921;DP=42;MQRankSum=0.000;QUALapprox=484;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151200,42;ReadPosRankSum=-0.602;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:22,19,0:41:99:484,0,631,550,688,1238:12,10,6,13 +chrX 4881146 . T . . END=4881350 GT:DP:GQ:MIN_DP:PL 0/0:49:97:49:0,97,1241 +chrX 4881351 . T C, 765.64 . AS_QUALapprox=|773|0;AS_VarDP=13|27|0;BaseQRankSum=-1.201;DP=41;MQRankSum=0.000;QUALapprox=773;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147600,41;ReadPosRankSum=1.141;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:13,27,0:40:99:773,0,332,812,413,1225:7,6,14,13 +chrX 4881352 . G . . END=4881827 GT:DP:GQ:MIN_DP:PL 0/0:56:87:56:0,87,1393 +chrX 4881828 . T C, 726.64 . AS_QUALapprox=|734|0;AS_VarDP=26|27|0;BaseQRankSum=-0.991;DP=55;MQRankSum=0.000;QUALapprox=734;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-0.392;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:26,27,0:53:99:734,0,735,812,816,1628:11,15,14,13 +chrX 4881829 . C . . END=4882696 GT:DP:GQ:MIN_DP:PL 0/0:47:27:47:0,27,1083 +chrX 4882697 . C A, 530.64 . AS_QUALapprox=|538|0;AS_VarDP=29|20|0;BaseQRankSum=1.290;DP=52;MQRankSum=0.000;QUALapprox=538;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=-0.092;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:29,20,0:49:99:538,0,811,625,871,1496:16,13,7,13 +chrX 4882698 . T . . END=4883870 GT:DP:GQ:MIN_DP:PL 0/0:54:89:54:0,89,1164 +chrX 4883871 . A C, 1852.06 . AS_QUALapprox=|1866|0;AS_VarDP=0|57|0;DP=57;QUALapprox=1866;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,57,0:57:99:1866,171,0,1866,171,1866:0,0,31,26 +chrX 4883872 . T . . END=4884993 GT:DP:GQ:MIN_DP:PL 0/0:56:86:56:0,86,1147 +chrX 4884994 . C G, 1175.64 . AS_QUALapprox=|1183|0;AS_VarDP=25|30|0;BaseQRankSum=-0.069;DP=56;MQRankSum=0.000;QUALapprox=1183;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=0.964;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,30,0:55:99:0|1:4884994_C_G:1183,0,948,1258,1039,2297:4884994:9,16,16,14 +chrX 4884995 . C . . END=4884995 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,120,1800 +chrX 4884996 . G A, 1175.64 . AS_QUALapprox=|1183|0;AS_VarDP=25|30|0;BaseQRankSum=1.481;DP=56;MQRankSum=0.000;QUALapprox=1183;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=0.705;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,30,0:55:99:0|1:4884994_C_G:1183,0,948,1258,1039,2297:4884994:9,16,16,14 +chrX 4884997 . G . . END=4885130 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,104,1294 +chrX 4885131 . A G, 649.64 . AS_QUALapprox=|657|0;AS_VarDP=14|25|0;BaseQRankSum=-1.575;DP=40;MQRankSum=0.000;QUALapprox=657;RAW_GT_COUNT=0,1,0;RAW_MQandDP=144000,40;ReadPosRankSum=-0.762;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:14,25,0:39:99:657,0,345,699,420,1119:6,8,11,14 +chrX 4885132 . C . . END=4885541 GT:DP:GQ:MIN_DP:PL 0/0:50:88:50:0,88,1276 +chrX 4885542 . C T, 741.64 . AS_QUALapprox=|749|0;AS_VarDP=28|30|0;BaseQRankSum=-2.227;DP=59;MQRankSum=0.000;QUALapprox=749;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=2.039;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:28,30,0:58:99:749,0,780,833,869,1702:17,11,12,18 +chrX 4885543 . C . . END=4886630 GT:DP:GQ:MIN_DP:PL 0/0:53:94:53:0,94,1215 +chrX 4886631 . A C, 896.64 . AS_QUALapprox=|904|0;AS_VarDP=32|36|0;BaseQRankSum=-1.832;DP=70;MQRankSum=0.000;QUALapprox=904;RAW_GT_COUNT=0,1,0;RAW_MQandDP=252000,70;ReadPosRankSum=-0.221;VarDP=68 GT:AD:DP:GQ:PL:SB 0/1:32,36,0:68:99:904,0,869,1001,976,1977:23,9,18,18 +chrX 4886632 . C . . END=4888443 GT:DP:GQ:MIN_DP:PL 0/0:56:29:55:0,29,1259 +chrX 4888444 . GGATT G, 1116.60 . AS_QUALapprox=|1124|0;AS_VarDP=20|29|0;BaseQRankSum=1.288;DP=51;MQRankSum=0.000;QUALapprox=1124;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-2.025;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:20,29,0:49:99:1124,0,742,1185,829,2014:12,8,15,14 +chrX 4888449 . A . . END=4889290 GT:DP:GQ:MIN_DP:PL 0/0:53:70:53:0,70,1072 +chrX 4889291 . C T, 459.64 . AS_QUALapprox=|467|0;AS_VarDP=21|17|0;BaseQRankSum=1.203;DP=41;MQRankSum=0.000;QUALapprox=467;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147600,41;ReadPosRankSum=0.999;VarDP=38 GT:AD:DP:GQ:PL:SB 0/1:21,17,0:38:99:467,0,575,530,627,1156:11,10,5,12 +chrX 4889292 . G . . END=4889573 GT:DP:GQ:MIN_DP:PL 0/0:49:76:49:0,76,1276 +chrX 4889574 . T C, 632.64 . AS_QUALapprox=|640|0;AS_VarDP=31|27|0;BaseQRankSum=-1.709;DP=59;MQRankSum=0.000;QUALapprox=640;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=1.201;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:31,27,0:58:99:640,0,827,732,907,1640:19,12,16,11 +chrX 4889575 . G . . END=4889688 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 4889689 . G C, 367.64 . AS_QUALapprox=|375|0;AS_VarDP=38|17|0;BaseQRankSum=-1.143;DP=57;MQRankSum=0.000;QUALapprox=375;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=1.029;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:38,17,0:55:99:375,0,1093,490,1144,1634:16,22,11,6 +chrX 4889690 . G . . END=4890371 GT:DP:GQ:MIN_DP:PL 0/0:59:90:59:0,90,1380 +chrX 4890372 . C T, 792.64 . AS_QUALapprox=|800|0;AS_VarDP=22|29|0;BaseQRankSum=-0.459;DP=51;MQRankSum=0.000;QUALapprox=800;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=2.798;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:22,29,0:51:99:800,0,576,866,662,1528:11,11,14,15 +chrX 4890373 . C . . END=4891316 GT:DP:GQ:MIN_DP:PL 0/0:32:22:32:0,22,804 +chrX 4891317 . G . . END=4891317 GT:DP:GQ:MIN_DP:PL 0/0:31:9:31:0,9,869 +chrX 4891318 . G . . END=4891365 GT:DP:GQ:MIN_DP:PL 0/0:36:55:36:0,55,964 +chrX 4891366 . T G, 271.64 . AS_QUALapprox=|279|0;AS_VarDP=33|9|0;BaseQRankSum=1.115;DP=43;MQRankSum=-5.125;QUALapprox=279;RAW_GT_COUNT=0,1,0;RAW_MQandDP=128642,43;ReadPosRankSum=-0.445;VarDP=42 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:33,9,0:42:99:0|1:4891366_T_G:279,0,1359,378,1386,1764:4891366:18,15,8,1 +chrX 4891367 . G . . END=4891372 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,120,1800 +chrX 4891373 . A G, 268.64 . AS_QUALapprox=|276|0;AS_VarDP=34|9|0;BaseQRankSum=1.097;DP=44;MQRankSum=-5.175;QUALapprox=276;RAW_GT_COUNT=0,1,0;RAW_MQandDP=132242,44;ReadPosRankSum=0.164;VarDP=43 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:34,9,0:43:99:0|1:4891366_T_G:276,0,1401,378,1428,1806:4891366:18,16,8,1 +chrX 4891374 . T . . END=4891376 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,120,1800 +chrX 4891377 . A G, 265.64 . AS_QUALapprox=|273|0;AS_VarDP=35|9|0;BaseQRankSum=1.096;DP=45;MQRankSum=-5.225;QUALapprox=273;RAW_GT_COUNT=0,1,0;RAW_MQandDP=135842,45;ReadPosRankSum=0.433;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:35,9,0:44:99:0|1:4891366_T_G:273,0,1431,378,1458,1836:4891366:19,16,8,1 +chrX 4891378 . T . . END=4891507 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,105,1450 +chrX 4891508 . C CA, 486.60 . AS_QUALapprox=|494|0;AS_VarDP=27|17|0;BaseQRankSum=0.090;DP=47;MQRankSum=-3.483;QUALapprox=494;RAW_GT_COUNT=0,1,0;RAW_MQandDP=143381,47;ReadPosRankSum=-0.325;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:27,17,0:44:99:494,0,879,575,930,1506:15,12,9,8 +chrX 4891509 . A . . END=4891946 GT:DP:GQ:MIN_DP:PL 0/0:51:57:51:0,57,1068 +chrX 4891947 . C G, 937.64 . AS_QUALapprox=|945|0;AS_VarDP=21|24|0;BaseQRankSum=-1.322;DP=46;MQRankSum=-5.108;QUALapprox=945;RAW_GT_COUNT=0,1,0;RAW_MQandDP=102696,46;ReadPosRankSum=-0.489;VarDP=45 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:21,24,0:45:99:0|1:4891947_C_G:945,0,768,1008,840,1848:4891947:10,11,18,6 +chrX 4891948 . T . . END=4891953 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,120,1800 +chrX 4891954 . T C, 1003.64 . AS_QUALapprox=|1011|0;AS_VarDP=19|26|0;BaseQRankSum=0.659;DP=45;MQRankSum=-4.608;QUALapprox=1011;RAW_GT_COUNT=0,1,0;RAW_MQandDP=98745,45;ReadPosRankSum=-1.063;VarDP=45 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:19,26,0:45:99:0|1:4891947_C_G:1011,0,699,1069,777,1845:4891947:9,10,20,6 +chrX 4891955 . C . . END=4892217 GT:DP:GQ:MIN_DP:PL 0/0:55:98:55:0,98,1482 +chrX 4892218 . T C, 1052.64 . AS_QUALapprox=|1060|0;AS_VarDP=30|40|0;BaseQRankSum=-0.341;DP=73;MQRankSum=-4.694;QUALapprox=1060;RAW_GT_COUNT=0,1,0;RAW_MQandDP=228990,73;ReadPosRankSum=1.116;VarDP=70 GT:AD:DP:GQ:PL:SB 0/1:30,40,0:70:99:1060,0,773,1150,892,2042:14,16,20,20 +chrX 4892219 . G . . END=4893162 GT:DP:GQ:MIN_DP:PL 0/0:50:76:50:0,76,1147 +chrX 4893163 . G A, 612.64 . AS_QUALapprox=|620|0;AS_VarDP=17|23|0;BaseQRankSum=0.837;DP=41;MQRankSum=-1.901;QUALapprox=620;RAW_GT_COUNT=0,1,0;RAW_MQandDP=89158,41;ReadPosRankSum=-0.781;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:17,23,0:40:99:620,0,381,670,450,1120:11,6,11,12 +chrX 4893164 . T . . END=4893763 GT:DP:GQ:MIN_DP:PL 0/0:46:63:46:0,63,1186 +chrX 4893764 . G A, 642.64 . AS_QUALapprox=|650|0;AS_VarDP=30|25|0;BaseQRankSum=0.740;DP=57;MQRankSum=-1.321;QUALapprox=650;RAW_GT_COUNT=0,1,0;RAW_MQandDP=112232,57;ReadPosRankSum=0.693;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:30,25,0:55:99:650,0,778,739,853,1592:17,13,18,7 +chrX 4893765 . A . . END=4893828 GT:DP:GQ:MIN_DP:PL 0/0:54:99:54:0,120,1800 +chrX 4893829 . G A, 1103.64 . AS_QUALapprox=|1111|0;AS_VarDP=29|30|0;BaseQRankSum=2.196;DP=59;MQRankSum=-3.162;QUALapprox=1111;RAW_GT_COUNT=0,1,0;RAW_MQandDP=131213,59;ReadPosRankSum=-2.209;VarDP=59 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:29,30,0:59:99:0|1:4893829_G_A:1111,0,1107,1198,1197,2396:4893829:19,10,15,15 +chrX 4893830 . T . . END=4893849 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 4893850 . C T,A, 1045.64 . AS_QUALapprox=|1053|35|0;AS_VarDP=29|28|3|0;BaseQRankSum=1.862;DP=60;MQRankSum=-4.029;QUALapprox=1053;RAW_GT_COUNT=0,1,0;RAW_MQandDP=138368,60;ReadPosRankSum=-0.645;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:29,28,3,0:60:99:1053,0,1134,1018,1067,2228,1144,1207,2226,2361:18,11,18,13 +chrX 4893851 . C G, 1036.64 . AS_QUALapprox=|1044|0;AS_VarDP=32|28|0;BaseQRankSum=1.077;DP=60;MQRankSum=-2.751;QUALapprox=1044;RAW_GT_COUNT=0,1,0;RAW_MQandDP=138368,60;ReadPosRankSum=-1.452;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:32,28,0:60:99:0|1:4893829_G_A:1044,0,1260,1141,1344,2484:4893829:21,11,15,13 +chrX 4893852 . A . . END=4894013 GT:DP:GQ:MIN_DP:PL 0/0:58:43:55:0,43,1518 +chrX 4894014 . A G, 618.64 . AS_QUALapprox=|626|0;AS_VarDP=28|23|0;BaseQRankSum=0.294;DP=55;MQRankSum=-0.306;QUALapprox=626;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147759,55;ReadPosRankSum=-0.095;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:28,23,0:51:99:626,0,749,710,818,1528:13,15,9,14 +chrX 4894015 . G . . END=4894207 GT:DP:GQ:MIN_DP:PL 0/0:54:52:54:0,52,1479 +chrX 4894208 . T C, 828.64 . AS_QUALapprox=|836|0;AS_VarDP=30|32|0;BaseQRankSum=-0.066;DP=64;MQRankSum=-4.736;QUALapprox=836;RAW_GT_COUNT=0,1,0;RAW_MQandDP=202465,64;ReadPosRankSum=-0.634;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:30,32,0:62:99:836,0,771,925,868,1793:12,18,17,15 +chrX 4894209 . G . . END=4894225 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 4894226 . A G, 1036.64 . AS_QUALapprox=|1044|0;AS_VarDP=32|29|0;BaseQRankSum=-1.038;DP=64;MQRankSum=-5.911;QUALapprox=1044;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194465,64;ReadPosRankSum=0.479;VarDP=61 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:32,29,0:61:99:0|1:4894226_A_G:1044,0,1246,1141,1333,2474:4894226:12,20,19,10 +chrX 4894227 . G . . END=4894235 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1800 +chrX 4894236 . A G, 1008.64 . AS_QUALapprox=|1016|0;AS_VarDP=31|28|0;BaseQRankSum=-0.933;DP=61;MQRankSum=-6.154;QUALapprox=1016;RAW_GT_COUNT=0,1,0;RAW_MQandDP=179089,61;ReadPosRankSum=0.228;VarDP=59 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:31,28,0:59:99:0|1:4894226_A_G:1016,0,1217,1109,1302,2411:4894226:12,19,18,10 +chrX 4894237 . G . . END=4894329 GT:DP:GQ:MIN_DP:PL 0/0:52:95:52:0,95,1355 +chrX 4894330 . C T, 485.64 . AS_QUALapprox=|493|0;AS_VarDP=31|19|0;BaseQRankSum=0.595;DP=51;MQRankSum=-3.640;QUALapprox=493;RAW_GT_COUNT=0,1,0;RAW_MQandDP=160771,51;ReadPosRankSum=-0.490;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:31,19,0:50:99:493,0,882,586,940,1526:14,17,13,6 +chrX 4894331 . A . . END=4894618 GT:DP:GQ:MIN_DP:PL 0/0:54:86:54:0,86,1508 +chrX 4894619 . C T, 495.64 . AS_QUALapprox=|503|0;AS_VarDP=25|21|0;BaseQRankSum=-0.996;DP=47;MQRankSum=0.812;QUALapprox=503;RAW_GT_COUNT=0,1,0;RAW_MQandDP=160218,47;ReadPosRankSum=0.927;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:25,21,0:46:99:503,0,677,577,739,1316:15,10,8,13 +chrX 4894620 . G . . END=4894883 GT:DP:GQ:MIN_DP:PL 0/0:50:77:50:0,77,1261 +chrX 4894884 . T C, 533.64 . AS_QUALapprox=|541|0;AS_VarDP=31|20|0;BaseQRankSum=2.819;DP=52;MQRankSum=-5.456;QUALapprox=541;RAW_GT_COUNT=0,1,0;RAW_MQandDP=121122,52;ReadPosRankSum=-1.486;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:31,20,0:51:99:541,0,824,634,884,1518:13,18,15,5 +chrX 4894885 . T . . END=4894957 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,120,1800 +chrX 4894958 . A T, 601.64 . AS_QUALapprox=|609|0;AS_VarDP=24|23|0;BaseQRankSum=-0.049;DP=47;MQRankSum=-1.932;QUALapprox=609;RAW_GT_COUNT=0,1,0;RAW_MQandDP=114368,47;ReadPosRankSum=-0.021;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:24,23,0:47:99:609,0,653,681,722,1403:6,18,9,14 +chrX 4894959 . C . . END=4895063 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1549 +chrX 4895064 . A T, 839.64 . AS_QUALapprox=|847|0;AS_VarDP=17|30|0;BaseQRankSum=-0.787;DP=50;MQRankSum=-1.928;QUALapprox=847;RAW_GT_COUNT=0,1,0;RAW_MQandDP=174004,50;ReadPosRankSum=-0.587;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:17,30,0:47:99:847,0,440,898,530,1428:11,6,12,18 +chrX 4895065 . T . . END=4896240 GT:DP:GQ:MIN_DP:PL 0/0:52:97:52:0,97,1325 +chrX 4896241 . T C, 756.64 . AS_QUALapprox=|764|0;AS_VarDP=18|28|0;BaseQRankSum=-2.261;DP=47;MQRankSum=-4.102;QUALapprox=764;RAW_GT_COUNT=0,1,0;RAW_MQandDP=133648,47;ReadPosRankSum=0.360;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:18,28,0:46:99:764,0,487,818,572,1390:13,5,12,16 +chrX 4896242 . G . . END=4896470 GT:DP:GQ:MIN_DP:PL 0/0:47:86:47:0,86,1281 +chrX 4896471 . T A, 652.64 . AS_QUALapprox=|660|0;AS_VarDP=20|23|0;BaseQRankSum=1.568;DP=44;MQRankSum=-3.555;QUALapprox=660;RAW_GT_COUNT=0,1,0;RAW_MQandDP=80788,44;ReadPosRankSum=-0.268;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:20,23,0:43:99:660,0,527,719,596,1316:8,12,8,15 +chrX 4896472 . A . . END=4896634 GT:DP:GQ:MIN_DP:PL 0/0:42:82:42:0,82,1166 +chrX 4896635 . C T, 407.64 . AS_QUALapprox=|415|0;AS_VarDP=22|18|0;BaseQRankSum=-0.478;DP=41;MQRankSum=-2.761;QUALapprox=415;RAW_GT_COUNT=0,1,0;RAW_MQandDP=69478,41;ReadPosRankSum=0.816;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:22,18,0:40:99:415,0,532,480,586,1066:13,9,9,9 +chrX 4896636 . C . . END=4896748 GT:DP:GQ:MIN_DP:PL 0/0:41:78:41:0,78,1146 +chrX 4896749 . G A, 664.64 . AS_QUALapprox=|672|0;AS_VarDP=28|18|0;BaseQRankSum=3.357;DP=47;MQRankSum=-6.044;QUALapprox=672;RAW_GT_COUNT=0,1,0;RAW_MQandDP=120120,47;ReadPosRankSum=0.090;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,18,0:46:99:0|1:4896749_G_A:672,0,1089,756,1143,1899:4896749:14,14,12,6 +chrX 4896750 . C . . END=4896750 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,120,1800 +chrX 4896751 . C A, 664.64 . AS_QUALapprox=|672|0;AS_VarDP=28|18|0;BaseQRankSum=2.291;DP=48;MQRankSum=-6.044;QUALapprox=672;RAW_GT_COUNT=0,1,0;RAW_MQandDP=123471,48;ReadPosRankSum=0.203;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,18,0:46:99:0|1:4896749_G_A:672,0,1089,756,1143,1899:4896749:14,14,12,6 +chrX 4896752 . G . . END=4896763 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,120,1800 +chrX 4896764 . A G, 709.64 . AS_QUALapprox=|717|0;AS_VarDP=27|19|0;BaseQRankSum=2.147;DP=48;MQRankSum=-6.230;QUALapprox=717;RAW_GT_COUNT=0,1,0;RAW_MQandDP=124799,48;ReadPosRankSum=-0.011;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,19,0:46:99:0|1:4896764_A_G:717,0,1070,798,1127,1925:4896764:12,15,13,6 +chrX 4896765 . C . . END=4896766 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,120,1800 +chrX 4896767 . C T, 709.64 . AS_QUALapprox=|717|0;AS_VarDP=27|19|0;BaseQRankSum=3.546;DP=46;MQRankSum=-6.230;QUALapprox=717;RAW_GT_COUNT=0,1,0;RAW_MQandDP=121350,46;ReadPosRankSum=-0.067;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,19,0:46:99:0|1:4896764_A_G:717,0,1070,798,1127,1925:4896764:12,15,13,6 +chrX 4896768 . G . . END=4896773 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,120,1800 +chrX 4896774 . G A, 706.64 . AS_QUALapprox=|714|0;AS_VarDP=28|19|0;BaseQRankSum=2.308;DP=48;MQRankSum=-6.306;QUALapprox=714;RAW_GT_COUNT=0,1,0;RAW_MQandDP=128550,48;ReadPosRankSum=0.257;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:28,19,0:47:99:0|1:4896764_A_G:714,0,1077,798,1134,1932:4896764:13,15,13,6 +chrX 4896775 . C . . END=4896933 GT:DP:GQ:MIN_DP:PL 0/0:57:90:57:0,90,1398 +chrX 4896934 . A G, 932.64 . AS_QUALapprox=|940|0;AS_VarDP=24|35|0;BaseQRankSum=-0.544;DP=65;MQRankSum=-3.900;QUALapprox=940;RAW_GT_COUNT=0,1,0;RAW_MQandDP=164422,65;ReadPosRankSum=1.366;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:24,35,0:59:99:940,0,628,1012,732,1744:14,10,20,15 +chrX 4896935 . T . . END=4897125 GT:DP:GQ:MIN_DP:PL 0/0:62:99:62:0,120,1800 +chrX 4897126 . C T, 684.64 . AS_QUALapprox=|692|0;AS_VarDP=27|27|0;BaseQRankSum=-1.530;DP=55;MQRankSum=-2.983;QUALapprox=692;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180507,55;ReadPosRankSum=1.402;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:27,27,0:54:99:692,0,776,773,856,1630:14,13,11,16 +chrX 4897127 . G . . END=4897402 GT:DP:GQ:MIN_DP:PL 0/0:54:85:54:0,85,1303 +chrX 4897403 . G C, 689.64 . AS_QUALapprox=|697|0;AS_VarDP=21|25|0;BaseQRankSum=1.058;DP=47;MQRankSum=-1.973;QUALapprox=697;RAW_GT_COUNT=0,1,0;RAW_MQandDP=153530,47;ReadPosRankSum=0.971;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:21,25,0:46:99:697,0,542,760,617,1377:6,15,6,19 +chrX 4897404 . T . . END=4897681 GT:DP:GQ:MIN_DP:PL 0/0:38:62:38:0,62,929 +chrX 4897682 . A G, 505.64 . AS_QUALapprox=|513|0;AS_VarDP=24|19|0;BaseQRankSum=1.485;DP=44;MQRankSum=0.804;QUALapprox=513;RAW_GT_COUNT=0,1,0;RAW_MQandDP=101444,44;ReadPosRankSum=0.232;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:24,19,0:43:99:513,0,617,584,675,1259:16,8,9,10 +chrX 4897683 . G . . END=4897764 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,101,1330 +chrX 4897765 . T G, 821.64 . AS_QUALapprox=|829|0;AS_VarDP=19|31|0;BaseQRankSum=-0.063;DP=51;MQRankSum=-1.948;QUALapprox=829;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162486,51;ReadPosRankSum=-0.020;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:19,31,0:50:99:829,0,481,887,573,1460:7,12,19,12 +chrX 4897766 . G . . END=4898801 GT:DP:GQ:MIN_DP:PL 0/0:53:80:53:0,80,1285 +chrX 4898802 . A G, 523.64 . AS_QUALapprox=|531|0;AS_VarDP=28|20|0;BaseQRankSum=0.099;DP=52;MQRankSum=0.000;QUALapprox=531;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=2.291;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:28,20,0:48:99:531,0,799,615,859,1474:16,12,9,11 +chrX 4898803 . T . . END=4899128 GT:DP:GQ:MIN_DP:PL 0/0:50:85:50:0,85,1152 +chrX 4899129 . T C, 781.64 . AS_QUALapprox=|789|0;AS_VarDP=29|32|0;BaseQRankSum=-0.981;DP=64;MQRankSum=0.000;QUALapprox=789;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=-0.939;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:29,32,0:61:99:789,0,754,876,850,1726:13,16,16,16 +chrX 4899130 . T . . END=4899391 GT:DP:GQ:MIN_DP:PL 0/0:49:95:49:0,95,1270 +chrX 4899392 . C A, 419.64 . AS_QUALapprox=|427|0;AS_VarDP=27|16|0;BaseQRankSum=1.621;DP=47;MQRankSum=0.000;QUALapprox=427;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=0.981;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:27,16,0:43:99:427,0,748,508,796,1304:13,14,8,8 +chrX 4899393 . C . . END=4899575 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 4899576 . T C, 603.64 . AS_QUALapprox=|611|0;AS_VarDP=37|24|0;BaseQRankSum=0.320;DP=62;MQRankSum=0.000;QUALapprox=611;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=0.502;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:37,24,0:61:99:611,0,1003,721,1075,1796:21,16,11,13 +chrX 4899577 . T . . END=4902041 GT:DP:GQ:MIN_DP:PL 0/0:57:59:57:0,59,1031 +chrX 4902042 . CA C, 112.60 . AS_QUALapprox=|120|0;AS_VarDP=18|10|0;BaseQRankSum=0.423;DP=46;MQRankSum=-0.322;QUALapprox=120;RAW_GT_COUNT=0,1,0;RAW_MQandDP=163250,46;ReadPosRankSum=1.445;VarDP=28 GT:AD:DP:GQ:PL:SB 0/1:18,10,0:28:99:120,0,264,173,294,467:4,14,7,3 +chrX 4902044 . A . . END=4903287 GT:DP:GQ:MIN_DP:PL 0/0:52:35:46:0,35,1038 +chrX 4903288 . A G, 633.64 . AS_QUALapprox=|641|0;AS_VarDP=17|24|0;BaseQRankSum=-1.292;DP=42;MQRankSum=0.000;QUALapprox=641;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151200,42;ReadPosRankSum=0.649;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:17,24,0:41:99:641,0,447,692,519,1211:10,7,15,9 +chrX 4903289 . G . . END=4903304 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,99,1244 +chrX 4903305 . A G, 632.64 . AS_QUALapprox=|640|0;AS_VarDP=15|24|0;BaseQRankSum=0.595;DP=42;MQRankSum=0.000;QUALapprox=640;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151200,42;ReadPosRankSum=-0.043;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:15,24,0:39:99:640,0,365,686,436,1122:10,5,15,9 +chrX 4903306 . G . . END=4904665 GT:DP:GQ:MIN_DP:PL 0/0:58:69:58:0,69,1195 +chrX 4904666 . C G, 1132.64 . AS_QUALapprox=|1140|0;AS_VarDP=22|41|0;BaseQRankSum=-1.604;DP=66;MQRankSum=0.000;QUALapprox=1140;RAW_GT_COUNT=0,1,0;RAW_MQandDP=237600,66;ReadPosRankSum=-0.909;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:22,41,0:63:99:1140,0,564,1206,687,1893:11,11,25,16 +chrX 4904667 . C . . END=4906500 GT:DP:GQ:MIN_DP:PL 0/0:54:86:54:0,86,1375 +chrX 4906501 . C T, 631.64 . AS_QUALapprox=|639|0;AS_VarDP=30|25|0;BaseQRankSum=-0.698;DP=57;MQRankSum=0.000;QUALapprox=639;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-0.355;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:30,25,0:55:99:639,0,837,729,912,1641:18,12,12,13 +chrX 4906502 . A . . END=4907451 GT:DP:GQ:MIN_DP:PL 0/0:54:98:54:0,98,1269 +chrX 4907452 . C A, 606.64 . AS_QUALapprox=|614|0;AS_VarDP=19|24|0;BaseQRankSum=-2.296;DP=44;MQRankSum=0.000;QUALapprox=614;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=-0.037;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:19,24,0:43:99:614,0,532,671,603,1275:10,9,11,13 +chrX 4907453 . C . . END=4908638 GT:DP:GQ:MIN_DP:PL 0/0:51:65:51:0,65,1001 +chrX 4908639 . T . . END=4908639 GT:DP:GQ:MIN_DP:PL 0/0:42:0:42:0,0,1121 +chrX 4908640 . C CA, 221.60 . AS_QUALapprox=|229|0;AS_VarDP=7|16|0;BaseQRankSum=0.103;DP=44;MQRankSum=0.057;QUALapprox=229;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154029,44;ReadPosRankSum=-0.470;VarDP=23 GT:AD:DP:GQ:PL:SB 0/1:7,16,0:23:74:229,0,74,250,121,370:5,2,5,11 +chrX 4908641 . A . . END=4908662 GT:DP:GQ:MIN_DP:PL 0/0:64:99:64:0,99,1485 +chrX 4908663 . G . . END=4908663 GT:DP:GQ:MIN_DP:PL 0/0:63:0:63:0,0,1632 +chrX 4908664 . T . . END=4910328 GT:DP:GQ:MIN_DP:PL 0/0:60:41:60:0,41,1285 +chrX 4910329 . T G, 643.64 . AS_QUALapprox=|651|0;AS_VarDP=30|24|0;BaseQRankSum=1.743;DP=58;MQRankSum=0.000;QUALapprox=651;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-1.646;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:30,24,0:54:99:651,0,784,741,857,1597:18,12,14,10 +chrX 4910330 . C . . END=4912011 GT:DP:GQ:MIN_DP:PL 0/0:58:78:58:0,78,1110 +chrX 4912012 . C CA, 406.60 . AS_QUALapprox=|414|0;AS_VarDP=10|21|0;BaseQRankSum=-1.081;DP=43;MQRankSum=0.000;QUALapprox=414;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154800,43;ReadPosRankSum=-0.571;VarDP=31 GT:AD:DP:GQ:PL:SB 0/1:10,21,0:31:99:414,0,154,445,217,662:4,6,6,15 +chrX 4912013 . A . . END=4913204 GT:DP:GQ:MIN_DP:PL 0/0:59:69:59:0,69,1185 +chrX 4913205 . CT C, 244.60 . AS_QUALapprox=|252|0;AS_VarDP=28|15|0;BaseQRankSum=1.019;DP=51;MQRankSum=0.000;QUALapprox=252;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=0.918;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:28,15,0:43:99:252,0,570,335,614,949:14,14,3,12 +chrX 4913207 . T . . END=4913218 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,117,1755 +chrX 4913219 . G . . END=4913219 GT:DP:GQ:MIN_DP:PL 0/0:47:0:47:0,0,1117 +chrX 4913220 . T . . END=4913906 GT:DP:GQ:MIN_DP:PL 0/0:55:89:55:0,89,1364 +chrX 4913907 . A AAC, 1172.60 . AS_QUALapprox=|1180|0;AS_VarDP=26|30|0;BaseQRankSum=-0.276;DP=58;MQRankSum=0.000;QUALapprox=1180;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-0.016;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:26,30,0:56:99:1180,0,1002,1258,1092,2350:16,10,16,14 +chrX 4913908 . A . . END=4915782 GT:DP:GQ:MIN_DP:PL 0/0:61:97:61:0,97,1335 +chrX 4915783 . CA C, 425.60 . AS_QUALapprox=|433|0;AS_VarDP=28|22|0;BaseQRankSum=-0.194;DP=56;MQRankSum=0.000;QUALapprox=433;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=-0.382;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:28,22,0:50:99:433,0,589,517,655,1172:19,9,12,10 +chrX 4915785 . A . . END=4919088 GT:DP:GQ:MIN_DP:PL 0/0:54:31:48:0,31,1231 +chrX 4919089 . A C, 642.64 . AS_QUALapprox=|650|0;AS_VarDP=30|26|0;BaseQRankSum=-0.969;DP=57;MQRankSum=0.000;QUALapprox=650;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=0.649;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:30,26,0:56:99:650,0,825,741,902,1643:9,21,13,13 +chrX 4919090 . G . . END=4920301 GT:DP:GQ:MIN_DP:PL 0/0:49:86:49:0,86,1232 +chrX 4920302 . C G, 542.64 . AS_QUALapprox=|550|0;AS_VarDP=22|21|0;BaseQRankSum=-0.737;DP=44;MQRankSum=0.000;QUALapprox=550;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=-0.073;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:22,21,0:43:99:550,0,591,616,654,1270:15,7,7,14 +chrX 4920303 . T . . END=4924149 GT:DP:GQ:MIN_DP:PL 0/0:40:30:38:0,30,948 +chrX 4924150 . G A, 793.64 . AS_QUALapprox=|801|0;AS_VarDP=25|29|0;BaseQRankSum=0.610;DP=58;MQRankSum=0.000;QUALapprox=801;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-1.119;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:25,29,0:54:99:801,0,652,876,739,1615:15,10,11,18 +chrX 4924151 . A . . END=4925360 GT:DP:GQ:MIN_DP:PL 0/0:57:85:57:0,85,1161 +chrX 4925361 . A T,AT, 266.60 . AS_QUALapprox=|0|274|0;AS_VarDP=18|2|16|0;BaseQRankSum=-1.494;DP=52;MQRankSum=0.000;QUALapprox=274;RAW_GT_COUNT=0,1,0;RAW_MQandDP=187200,52;ReadPosRankSum=1.519;VarDP=36 GT:AD:DP:GQ:PL:SB 0/2:18,2,16,0:36:99:274,367,1359,0,414,380,403,1115,472,1087:7,11,11,7 +chrX 4925362 . T . . END=4925376 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,102,1530 +chrX 4925377 . G . . END=4925377 GT:DP:GQ:MIN_DP:PL 0/0:49:0:49:0,0,1215 +chrX 4925378 . A . . END=4928702 GT:DP:GQ:MIN_DP:PL 0/0:54:55:54:0,55,1130 +chrX 4928703 . G GAC, 905.03 . AS_QUALapprox=|919|0;AS_VarDP=1|29|0;BaseQRankSum=-0.480;DP=38;MQRankSum=0.000;QUALapprox=919;RAW_GT_COUNT=0,0,1;RAW_MQandDP=136800,38;ReadPosRankSum=0.520;VarDP=30 GT:AD:DP:GQ:PL:SB 1/1:1,29,0:30:56:919,56,0,922,87,953:0,1,12,17 +chrX 4928704 . A . . END=4929618 GT:DP:GQ:MIN_DP:PL 0/0:32:38:29:0,38,839 +chrX 4929619 . C . . END=4929619 GT:DP:GQ:MIN_DP:PL 0/0:30:6:30:0,6,854 +chrX 4929620 . A . . END=4929625 GT:DP:GQ:MIN_DP:PL 0/0:30:21:28:0,21,790 +chrX 4929626 . G . . END=4929626 GT:DP:GQ:MIN_DP:PL 0/0:28:15:28:0,15,814 +chrX 4929627 . CATATATATATATATAT C, 402.60 . AS_QUALapprox=|410|0;AS_VarDP=4|11|0;BaseQRankSum=-0.674;DP=23;MQRankSum=0.993;QUALapprox=410;RAW_GT_COUNT=0,1,0;RAW_MQandDP=81874,23;ReadPosRankSum=0.254;VarDP=15 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:4,11,0:15:99:0|1:4929627_CATATATATATATATAT_C:410,0,103,423,137,559:4929627:3,1,4,7 +chrX 4929644 . A . . END=4929655 GT:DP:GQ:MIN_DP:PL 0/0:18:27:17:0,27,405 +chrX 4929656 . A . . END=4929656 GT:DP:GQ:MIN_DP:PL 0/0:19:8:19:0,8,532 +chrX 4929657 . T . . END=4929663 GT:DP:GQ:MIN_DP:PL 0/0:19:30:19:0,30,450 +chrX 4929664 . A . . END=4929664 GT:DP:GQ:MIN_DP:PL 0/0:16:13:16:0,13,487 +chrX 4929665 . T . . END=4929666 GT:DP:GQ:MIN_DP:PL 0/0:16:23:16:0,23,450 +chrX 4929667 . T . . END=4929667 GT:DP:GQ:MIN_DP:PL 0/0:17:16:17:0,16,522 +chrX 4929668 . A . . END=4929669 GT:DP:GQ:MIN_DP:PL 0/0:18:36:18:0,36,540 +chrX 4929670 . A . . END=4929671 GT:DP:GQ:MIN_DP:PL 0/0:18:0:18:0,0,477 +chrX 4929672 . A G, 462.64 . AS_QUALapprox=|470|0;AS_VarDP=5|13|0;BaseQRankSum=0.456;DP=18;MQRankSum=0.902;QUALapprox=470;RAW_GT_COUNT=0,1,0;RAW_MQandDP=63874,18;ReadPosRankSum=1.233;VarDP=18 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:5,13,0:18:99:0|1:4929627_CATATATATATATATAT_C:470,0,114,485,153,638:4929627:1,4,5,8 +chrX 4929673 . T . . END=4929674 GT:DP:GQ:MIN_DP:PL 0/0:22:31:22:0,31,665 +chrX 4929675 . T . . END=4929675 GT:DP:GQ:MIN_DP:PL 0/0:21:14:21:0,14,591 +chrX 4929676 . A . . END=4930152 GT:DP:GQ:MIN_DP:PL 0/0:25:28:21:0,28,620 +chrX 4930153 . C T, 771.64 . AS_QUALapprox=|779|0;AS_VarDP=19|27|0;BaseQRankSum=2.123;DP=47;MQRankSum=-0.795;QUALapprox=779;RAW_GT_COUNT=0,1,0;RAW_MQandDP=168625,47;ReadPosRankSum=1.216;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:19,27,0:46:99:779,0,462,836,543,1379:12,7,15,12 +chrX 4930154 . G . . END=4930355 GT:DP:GQ:MIN_DP:PL 0/0:40:44:40:0,44,898 +chrX 4930356 . CAAAAAAA C, 621.60 . AS_QUALapprox=|629|0;AS_VarDP=22|17|0;BaseQRankSum=0.638;DP=58;MQRankSum=-0.766;QUALapprox=629;RAW_GT_COUNT=0,1,0;RAW_MQandDP=200106,58;ReadPosRankSum=0.350;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:22,17,0:39:99:629,0,720,695,772,1467:4,18,13,4 +chrX 4930364 . A . . END=4932474 GT:DP:GQ:MIN_DP:PL 0/0:60:64:60:0,64,892 +chrX 4932475 . G A, 844.64 . AS_QUALapprox=|852|0;AS_VarDP=15|29|0;BaseQRankSum=0.057;DP=45;MQRankSum=0.000;QUALapprox=852;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=0.285;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:15,29,0:44:99:852,0,364,897,452,1348:5,10,17,12 +chrX 4932476 . T . . END=4933860 GT:DP:GQ:MIN_DP:PL 0/0:46:70:46:0,70,1092 +chrX 4933861 . T C, 616.64 . AS_QUALapprox=|624|0;AS_VarDP=30|25|0;BaseQRankSum=0.689;DP=58;MQRankSum=0.000;QUALapprox=624;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-0.203;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:30,25,0:55:99:624,0,773,713,847,1561:16,14,9,16 +chrX 4933862 . C . . END=4934423 GT:DP:GQ:MIN_DP:PL 0/0:55:77:55:0,77,1274 +chrX 4934424 . G A, 1782.06 . AS_QUALapprox=|1796|0;AS_VarDP=0|55|0;DP=58;QUALapprox=1796;RAW_GT_COUNT=0,0,1;RAW_MQandDP=208800,58;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1796,165,0,1796,165,1796:0,0,25,30 +chrX 4934425 . C . . END=4934851 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,104,1394 +chrX 4934852 . T G, 586.64 . AS_QUALapprox=|594|0;AS_VarDP=24|22|0;BaseQRankSum=0.976;DP=47;MQRankSum=0.000;QUALapprox=594;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=-1.738;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:24,22,0:46:99:594,0,636,666,702,1368:13,11,11,11 +chrX 4934853 . T . . END=4935578 GT:DP:GQ:MIN_DP:PL 0/0:51:63:51:0,63,1155 +chrX 4935579 . T C, 631.64 . AS_QUALapprox=|639|0;AS_VarDP=19|26|0;BaseQRankSum=-2.531;DP=47;MQRankSum=0.000;QUALapprox=639;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=-0.494;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:19,26,0:45:99:639,0,516,696,593,1289:11,8,13,13 +chrX 4935580 . G . . END=4936463 GT:DP:GQ:MIN_DP:PL 0/0:59:70:59:0,70,1310 +chrX 4936464 . G C, 525.64 . AS_QUALapprox=|533|0;AS_VarDP=26|21|0;BaseQRankSum=0.580;DP=50;MQRankSum=0.000;QUALapprox=533;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=0.268;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:26,21,0:47:99:533,0,677,611,740,1351:13,13,10,11 +chrX 4936465 . T . . END=4942155 GT:DP:GQ:MIN_DP:PL 0/0:55:80:55:0,80,1093 +chrX 4942156 . TGATAGATAGATAGATAGATAGATA T,TGATAGATAGATA, 1413.02 . AS_QUALapprox=|756|724|0;AS_VarDP=0|19|16|0;DP=54;QUALapprox=1430;RAW_GT_COUNT=0,0,1;RAW_MQandDP=194400,54;VarDP=35 GT:AD:DP:GQ:PL:SB 1/2:0,19,16,0:35:99:1430,674,844,756,0,706,1447,797,773,1552:0,0,27,8 +chrX 4942181 . G . . END=4942213 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,114,1410 +chrX 4942214 . CAGATAGATAGAT C,CAGATAGAT, 1426.02 . AS_QUALapprox=|843|640|0;AS_VarDP=0|21|15|0;DP=57;QUALapprox=1443;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=36 GT:AD:DP:GQ:PL:SB 1/2:0,21,15,0:36:99:1443,600,719,849,0,803,1461,700,862,1544:0,0,17,19 +chrX 4942227 . A . . END=4942589 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,103,1592 +chrX 4942590 . C CA, 812.60 . AS_QUALapprox=|820|0;AS_VarDP=36|27|0;BaseQRankSum=1.977;DP=67;MQRankSum=0.000;QUALapprox=820;RAW_GT_COUNT=0,1,0;RAW_MQandDP=241200,67;ReadPosRankSum=0.792;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:36,27,0:63:99:820,0,1157,929,1238,2167:22,14,10,17 +chrX 4942591 . A . . END=4943901 GT:DP:GQ:MIN_DP:PL 0/0:53:78:53:0,78,1246 +chrX 4943902 . TA T, 399.60 . AS_QUALapprox=|407|0;AS_VarDP=29|21|0;BaseQRankSum=0.116;DP=58;MQRankSum=0.000;QUALapprox=407;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=-1.102;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:29,21,0:50:99:407,0,610,494,674,1167:16,13,13,8 +chrX 4943904 . A . . END=4944579 GT:DP:GQ:MIN_DP:PL 0/0:57:82:57:0,82,1300 +chrX 4944580 . G A, 822.04 . AS_QUALapprox=|990|0;AS_VarDP=26|27|0;BaseQRankSum=0.037;DP=54;MQRankSum=0.000;QUALapprox=990;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=2.287;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:26,27,0:53:99:0|1:4944580_G_A:990,0,964,947,1045,1980:4944580:10,16,10,10 +chrX 4944581 . A . . END=4944593 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 4944594 . CA C, 698.60 . AS_QUALapprox=|706|0;AS_VarDP=30|20|0;BaseQRankSum=-1.693;DP=62;MQRankSum=0.000;QUALapprox=706;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=1.736;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:30,20,0:50:99:0|1:4944580_G_A:706,0,1097,797,1157,1954:4944580:16,14,10,10 +chrX 4944596 . A . . END=4946810 GT:DP:GQ:MIN_DP:PL 0/0:56:73:56:0,73,1110 +chrX 4946811 . A G, 561.64 . AS_QUALapprox=|569|0;AS_VarDP=20|22|0;BaseQRankSum=0.018;DP=42;MQRankSum=0.000;QUALapprox=569;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151200,42;ReadPosRankSum=1.953;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:20,22,0:42:99:569,0,529,629,594,1223:9,11,7,15 +chrX 4946812 . G . . END=4947776 GT:DP:GQ:MIN_DP:PL 0/0:56:72:56:0,72,1232 +chrX 4947777 . A G, 841.64 . AS_QUALapprox=|849|0;AS_VarDP=20|31|0;BaseQRankSum=-2.054;DP=51;MQRankSum=0.000;QUALapprox=849;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-0.058;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:20,31,0:51:99:849,0,542,910,635,1545:9,11,15,16 +chrX 4947778 . T . . END=4949064 GT:DP:GQ:MIN_DP:PL 0/0:49:90:49:0,90,1171 +chrX 4949065 . G A, 692.64 . AS_QUALapprox=|700|0;AS_VarDP=25|25|0;BaseQRankSum=1.599;DP=51;MQRankSum=0.000;QUALapprox=700;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-2.009;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:25,25,0:50:99:700,0,628,774,703,1477:11,14,9,16 +chrX 4949066 . A . . END=4950849 GT:DP:GQ:MIN_DP:PL 0/0:49:71:49:0,71,948 +chrX 4950850 . A . . END=4950851 GT:DP:GQ:MIN_DP:PL 0/0:37:13:37:0,13,322 +chrX 4950852 . T . . END=4952111 GT:DP:GQ:MIN_DP:PL 0/0:33:30:31:0,30,694 +chrX 4952112 . A G, 1705.06 . AS_QUALapprox=|1719|0;AS_VarDP=0|59|0;DP=59;QUALapprox=1719;RAW_GT_COUNT=0,0,1;RAW_MQandDP=212400,59;VarDP=59 GT:AD:DP:GQ:PL:SB 1/1:0,59,0:59:99:1719,174,0,1719,174,1719:0,0,30,29 +chrX 4952113 . A . . END=4952997 GT:DP:GQ:MIN_DP:PL 0/0:50:52:50:0,52,888 +chrX 4952998 . CA C, 73.60 . AS_QUALapprox=|81|0;AS_VarDP=7|7|0;DP=42;MQRankSum=0.674;QUALapprox=81;RAW_GT_COUNT=0,1,0;RAW_MQandDP=143200,42;VarDP=14 GT:AD:DP:GQ:PL:SB 0/1:7,7,0:14:81:81,0,90,103,111,213:0,7,6,1 +chrX 4953000 . A . . END=4953531 GT:DP:GQ:MIN_DP:PL 0/0:57:52:57:0,52,1115 +chrX 4953532 . G A, 1047.64 . AS_QUALapprox=|1055|0;AS_VarDP=29|38|0;BaseQRankSum=1.131;DP=70;MQRankSum=0.000;QUALapprox=1055;RAW_GT_COUNT=0,1,0;RAW_MQandDP=252000,70;ReadPosRankSum=-0.911;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:29,38,0:67:99:1055,0,722,1142,836,1978:17,12,22,16 +chrX 4953533 . T . . END=4956071 GT:DP:GQ:MIN_DP:PL 0/0:56:85:56:0,85,1172 +chrX 4956072 . C A, 619.64 . AS_QUALapprox=|627|0;AS_VarDP=24|22|0;BaseQRankSum=2.263;DP=50;MQRankSum=0.000;QUALapprox=627;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=0.748;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:24,22,0:46:99:627,0,646,699,712,1411:12,12,12,10 +chrX 4956073 . A . . END=4956844 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,106,1499 +chrX 4956845 . G C, 1971.06 . AS_QUALapprox=|1985|0;AS_VarDP=0|52|0;DP=53;QUALapprox=1985;RAW_GT_COUNT=0,0,1;RAW_MQandDP=188964,53;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1|1:0,52,0:52:99:0|1:4956845_G_C:1985,156,0,1985,156,1985:4956845:0,0,26,26 +chrX 4956846 . C . . END=4956846 GT:DP:GQ:MIN_DP:PL 0/0:51:99:51:0,120,1800 +chrX 4956847 . C A, 702.64 . AS_QUALapprox=|710|0;AS_VarDP=25|26|0;BaseQRankSum=0.498;DP=53;MQRankSum=0.000;QUALapprox=710;RAW_GT_COUNT=0,1,0;RAW_MQandDP=188964,53;ReadPosRankSum=1.131;VarDP=51 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:25,26,0:51:99:0|1:4956845_G_C:710,0,650,784,728,1513:4956845:14,11,11,15 +chrX 4956848 . C . . END=4957015 GT:DP:GQ:MIN_DP:PL 0/0:55:91:55:0,91,1539 +chrX 4957016 . C T, 1649.06 . AS_QUALapprox=|1663|0;AS_VarDP=0|50|0;DP=52;QUALapprox=1663;RAW_GT_COUNT=0,0,1;RAW_MQandDP=186409,52;VarDP=50 GT:AD:DP:GQ:PL:SB 1/1:0,50,0:50:99:1663,150,0,1663,150,1663:0,0,28,22 +chrX 4957017 . T . . END=4958211 GT:DP:GQ:MIN_DP:PL 0/0:54:39:39:0,39,981 +chrX 4958212 . T C, 411.64 . AS_QUALapprox=|419|0;AS_VarDP=36|18|0;BaseQRankSum=-0.614;DP=55;MQRankSum=0.000;QUALapprox=419;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-1.037;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:36,18,0:54:99:419,0,1047,527,1101,1627:17,19,11,7 +chrX 4958213 . T . . END=4958392 GT:DP:GQ:MIN_DP:PL 0/0:57:86:57:0,86,1499 +chrX 4958393 . CA C, 790.60 . AS_QUALapprox=|798|0;AS_VarDP=21|25|0;BaseQRankSum=-1.663;DP=48;MQRankSum=0.000;QUALapprox=798;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=0.143;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:21,25,0:46:99:798,0,647,861,722,1583:14,7,12,13 +chrX 4958395 . A . . END=4958597 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,102,1410 +chrX 4958598 . A T, 556.64 . AS_QUALapprox=|564|0;AS_VarDP=21|21|0;BaseQRankSum=-0.390;DP=46;MQRankSum=0.000;QUALapprox=564;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=0.717;VarDP=42 GT:AD:DP:GQ:PL:SB 0/1:21,21,0:42:99:564,0,574,627,637,1264:11,10,10,11 +chrX 4958599 . T . . END=4958995 GT:DP:GQ:MIN_DP:PL 0/0:59:89:59:0,89,1370 +chrX 4958996 . G T, 518.64 . AS_QUALapprox=|526|0;AS_VarDP=42|22|0;BaseQRankSum=0.507;DP=69;MQRankSum=0.000;QUALapprox=526;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=-0.276;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:42,22,0:64:99:526,0,1173,652,1239,1890:19,23,11,11 +chrX 4958997 . C . . END=4960579 GT:DP:GQ:MIN_DP:PL 0/0:52:58:52:0,58,929 +chrX 4960580 . C . . END=4960580 GT:DP:GQ:MIN_DP:PL 0/0:42:7:42:0,7,1172 +chrX 4960581 . A . . END=4960636 GT:DP:GQ:MIN_DP:PL 0/0:32:56:32:0,56,829 +chrX 4960637 . CA C,CAAA,CAAAA, 286.02 . AS_QUALapprox=|160|0|139|0;AS_VarDP=2|13|0|9|0;BaseQRankSum=-1.393;DP=46;MQRankSum=0.000;QUALapprox=303;RAW_GT_COUNT=0,0,1;RAW_MQandDP=161600,46;ReadPosRankSum=-0.447;VarDP=24 GT:AD:DP:GQ:PL:SB 1/3:2,13,0,9,0:24:99:303,143,232,393,314,1110,164,0,486,472,367,279,795,464,748:2,0,10,12 +chrX 4960639 . A . . END=4961446 GT:DP:GQ:MIN_DP:PL 0/0:39:26:32:0,26,832 +chrX 4961447 . T C, 817.64 . AS_QUALapprox=|825|0;AS_VarDP=41|33|0;BaseQRankSum=-0.823;DP=78;MQRankSum=0.000;QUALapprox=825;RAW_GT_COUNT=0,1,0;RAW_MQandDP=280800,78;ReadPosRankSum=1.528;VarDP=74 GT:AD:DP:GQ:PL:SB 0/1:41,33,0:74:99:825,0,1143,948,1242,2190:23,18,14,19 +chrX 4961448 . A . . END=4961959 GT:DP:GQ:MIN_DP:PL 0/0:53:86:53:0,86,1224 +chrX 4961960 . C A, 958.64 . AS_QUALapprox=|966|0;AS_VarDP=24|25|0;BaseQRankSum=-1.370;DP=51;MQRankSum=0.000;QUALapprox=966;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=0.940;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:24,25,0:49:99:0|1:4961960_C_A:966,0,881,1038,956,1994:4961960:8,16,16,9 +chrX 4961961 . T . . END=4961975 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,120,1549 +chrX 4961976 . A C, 1027.64 . AS_QUALapprox=|1035|0;AS_VarDP=22|27|0;BaseQRankSum=-0.014;DP=50;MQRankSum=0.000;QUALapprox=1035;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=-0.342;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:22,27,0:49:99:0|1:4961960_C_A:1035,0,801,1101,883,1984:4961960:8,14,17,10 +chrX 4961977 . C . . END=4962622 GT:DP:GQ:MIN_DP:PL 0/0:50:71:50:0,71,1330 +chrX 4962623 . A C, 832.64 . AS_QUALapprox=|840|0;AS_VarDP=24|30|0;BaseQRankSum=0.410;DP=55;MQRankSum=0.000;QUALapprox=840;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-0.348;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:24,30,0:54:99:840,0,617,911,707,1619:12,12,12,18 +chrX 4962624 . A . . END=4964491 GT:DP:GQ:MIN_DP:PL 0/0:51:57:51:0,57,1183 +chrX 4964492 . G GT,GTTTT, 286.60 . AS_QUALapprox=|294|54|0;AS_VarDP=11|12|1|0;BaseQRankSum=-0.729;DP=44;MQRankSum=0.000;QUALapprox=294;RAW_GT_COUNT=0,1,0;RAW_MQandDP=156400,44;ReadPosRankSum=-0.667;VarDP=24 GT:AD:DP:GQ:PL:SB 0/1:11,12,1,0:24:99:294,0,153,240,203,775,309,230,653,664:4,7,4,9 +chrX 4964493 . T . . END=4964523 GT:DP:GQ:MIN_DP:PL 0/0:27:32:25:0,32,749 +chrX 4964524 . G A, 443.64 . AS_QUALapprox=|451|0;AS_VarDP=9|16|0;BaseQRankSum=-1.307;DP=26;MQRankSum=0.000;QUALapprox=451;RAW_GT_COUNT=0,1,0;RAW_MQandDP=93600,26;ReadPosRankSum=-2.607;VarDP=25 GT:AD:DP:GQ:PL:SB 0/1:9,16,0:25:99:451,0,238,478,286,764:0,9,6,10 +chrX 4964525 . G . . END=4964647 GT:DP:GQ:MIN_DP:PL 0/0:40:72:40:0,72,962 +chrX 4964648 . A G, 716.64 . AS_QUALapprox=|724|0;AS_VarDP=17|26|0;BaseQRankSum=-1.200;DP=45;MQRankSum=0.000;QUALapprox=724;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=-1.416;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:17,26,0:43:99:724,0,452,776,530,1305:7,10,13,13 +chrX 4964649 . C . . END=4966976 GT:DP:GQ:MIN_DP:PL 0/0:51:59:51:0,59,1240 +chrX 4966977 . A T, 522.64 . AS_QUALapprox=|530|0;AS_VarDP=35|23|0;BaseQRankSum=-2.850;DP=59;MQRankSum=0.000;QUALapprox=530;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=0.843;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:35,23,0:58:99:530,0,1022,635,1090,1725:15,20,14,9 +chrX 4966978 . G . . END=4967152 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,100,1355 +chrX 4967153 . T TATAG, 684.60 . AS_QUALapprox=|692|0;AS_VarDP=19|18|0;BaseQRankSum=1.109;DP=53;MQRankSum=0.000;QUALapprox=692;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=0.258;VarDP=37 GT:AD:DP:GQ:PL:SB 0/1:19,18,0:37:99:692,0,672,750,727,1476:8,11,9,9 +chrX 4967154 . A . . END=4967411 GT:DP:GQ:MIN_DP:PL 0/0:56:44:56:0,44,1291 +chrX 4967412 . T A, 783.64 . AS_QUALapprox=|791|0;AS_VarDP=17|28|0;BaseQRankSum=-0.546;DP=48;MQRankSum=0.000;QUALapprox=791;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=0.433;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:17,28,0:45:99:791,0,443,842,527,1369:6,11,17,11 +chrX 4967413 . T . . END=4968690 GT:DP:GQ:MIN_DP:PL 0/0:54:90:54:0,90,1458 +chrX 4968691 . A AT, 2471.03 . AS_QUALapprox=|2485|0;AS_VarDP=0|62|0;DP=65;QUALapprox=2485;RAW_GT_COUNT=0,0,1;RAW_MQandDP=233316,65;VarDP=62 GT:AD:DP:GQ:PL:SB 1/1:0,62,0:62:99:2485,187,0,2485,187,2485:0,0,29,33 +chrX 4968692 . A . . END=4969002 GT:DP:GQ:MIN_DP:PL 0/0:51:81:51:0,81,1127 +chrX 4969003 . C T, 622.64 . AS_QUALapprox=|630|0;AS_VarDP=16|22|0;BaseQRankSum=-0.285;DP=41;MQRankSum=0.000;QUALapprox=630;RAW_GT_COUNT=0,1,0;RAW_MQandDP=147600,41;ReadPosRankSum=-0.710;VarDP=38 GT:AD:DP:GQ:PL:SB 0/1:16,22,0:38:99:630,0,432,679,498,1177:9,7,13,9 +chrX 4969004 . A . . END=4969073 GT:DP:GQ:MIN_DP:PL 0/0:36:90:36:0,90,1092 +chrX 4969074 . G A, 474.64 . AS_QUALapprox=|482|0;AS_VarDP=19|17|0;BaseQRankSum=3.252;DP=40;MQRankSum=0.000;QUALapprox=482;RAW_GT_COUNT=0,1,0;RAW_MQandDP=144000,40;ReadPosRankSum=1.522;VarDP=36 GT:AD:DP:GQ:PL:SB 0/1:19,17,0:36:99:482,0,458,539,509,1049:14,5,10,7 +chrX 4969075 . G . . END=4969176 GT:DP:GQ:MIN_DP:PL 0/0:28:46:28:0,46,749 +chrX 4969177 . T . . END=4969177 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,744 +chrX 4969178 . C . . END=4969179 GT:DP:GQ:MIN_DP:PL 0/0:27:46:27:0,46,808 +chrX 4969180 . CAA C, 133.60 . AS_QUALapprox=|141|0;AS_VarDP=5|6|0;BaseQRankSum=0.000;DP=33;MQRankSum=0.000;QUALapprox=141;RAW_GT_COUNT=0,1,0;RAW_MQandDP=111225,33;ReadPosRankSum=-0.792;VarDP=11 GT:AD:DP:GQ:PL:SB 0/1:5,6,0:11:69:141,0,69,156,87,243:1,4,6,0 +chrX 4969183 . A . . END=4970941 GT:DP:GQ:MIN_DP:PL 0/0:60:49:60:0,49,900 +chrX 4970942 . G A, 781.64 . AS_QUALapprox=|789|0;AS_VarDP=31|30|0;BaseQRankSum=-0.962;DP=63;MQRankSum=0.000;QUALapprox=789;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=-1.501;VarDP=61 GT:AD:DP:GQ:PL:SB 0/1:31,30,0:61:99:789,0,838,881,928,1809:22,9,13,17 +chrX 4970943 . G . . END=4971206 GT:DP:GQ:MIN_DP:PL 0/0:55:99:55:0,109,1295 +chrX 4971207 . G A, 662.64 . AS_QUALapprox=|670|0;AS_VarDP=17|23|0;BaseQRankSum=1.420;DP=42;MQRankSum=0.000;QUALapprox=670;RAW_GT_COUNT=0,1,0;RAW_MQandDP=151200,42;ReadPosRankSum=1.232;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:17,23,0:40:99:670,0,426,720,495,1215:8,9,8,15 +chrX 4971208 . T . . END=4972022 GT:DP:GQ:MIN_DP:PL 0/0:52:80:52:0,80,1295 +chrX 4972023 . G A, 713.64 . AS_QUALapprox=|721|0;AS_VarDP=27|27|0;BaseQRankSum=-0.042;DP=57;MQRankSum=0.000;QUALapprox=721;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=0.589;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:27,27,0:54:99:721,0,756,803,836,1639:15,12,14,13 +chrX 4972024 . A . . END=4972811 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,112,1782 +chrX 4972812 . T A,TA, 538.60 . AS_QUALapprox=|56|546|0;AS_VarDP=22|3|21|0;BaseQRankSum=0.999;DP=55;MQRankSum=0.000;QUALapprox=546;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-0.418;VarDP=46 GT:AD:DP:GQ:PL:SB 0/2:22,3,21,0:46:99:546,490,1242,0,525,515,602,1185,609,1266:13,9,11,13 +chrX 4972813 . A . . END=4972915 GT:DP:GQ:MIN_DP:PL 0/0:63:62:63:0,62,1528 +chrX 4972916 . G T, 955.64 . AS_QUALapprox=|963|0;AS_VarDP=32|36|0;BaseQRankSum=0.009;DP=68;MQRankSum=0.000;QUALapprox=963;RAW_GT_COUNT=0,1,0;RAW_MQandDP=244800,68;ReadPosRankSum=0.418;VarDP=68 GT:AD:DP:GQ:PL:SB 0/1:32,36,0:68:99:963,0,819,1058,927,1985:13,19,18,18 +chrX 4972917 . A . . END=4973046 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 4973047 . C G, 737.64 . AS_QUALapprox=|745|0;AS_VarDP=28|28|0;BaseQRankSum=-0.604;DP=59;MQRankSum=0.000;QUALapprox=745;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-1.000;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:28,28,0:56:99:745,0,750,829,834,1663:16,12,15,13 +chrX 4973048 . G . . END=4973372 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,114,1426 +chrX 4973373 . T C, 375.64 . AS_QUALapprox=|383|0;AS_VarDP=31|15|0;BaseQRankSum=0.000;DP=51;MQRankSum=0.000;QUALapprox=383;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=0.316;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:31,15,0:46:99:383,0,938,476,983,1459:17,14,12,3 +chrX 4973374 . A . . END=4973591 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,116,1514 +chrX 4973592 . C T, 639.64 . AS_QUALapprox=|647|0;AS_VarDP=35|25|0;BaseQRankSum=0.660;DP=63;MQRankSum=0.000;QUALapprox=647;RAW_GT_COUNT=0,1,0;RAW_MQandDP=226800,63;ReadPosRankSum=0.953;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:35,25,0:60:99:647,0,956,753,1031,1784:13,22,14,11 +chrX 4973593 . C . . END=4973685 GT:DP:GQ:MIN_DP:PL 0/0:66:99:66:0,120,1800 +chrX 4973686 . C G, 743.64 . AS_QUALapprox=|751|0;AS_VarDP=26|28|0;BaseQRankSum=-0.952;DP=57;MQRankSum=0.000;QUALapprox=751;RAW_GT_COUNT=0,1,0;RAW_MQandDP=205200,57;ReadPosRankSum=-1.247;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:26,28,0:54:99:751,0,711,829,795,1624:11,15,14,14 +chrX 4973687 . A . . END=4973883 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,120,1800 +chrX 4973884 . G A, 609.64 . AS_QUALapprox=|617|0;AS_VarDP=27|24|0;BaseQRankSum=0.132;DP=55;MQRankSum=0.000;QUALapprox=617;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-0.368;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:27,24,0:51:99:617,0,711,697,783,1480:12,15,9,15 +chrX 4973885 . T . . END=4974026 GT:DP:GQ:MIN_DP:PL 0/0:49:99:49:0,108,1281 +chrX 4974027 . T G, 488.64 . AS_QUALapprox=|496|0;AS_VarDP=29|19|0;BaseQRankSum=0.000;DP=48;MQRankSum=0.000;QUALapprox=496;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=-0.127;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:29,19,0:48:99:496,0,831,583,888,1472:19,10,13,6 +chrX 4974028 . G . . END=4974169 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,107,1608 +chrX 4974170 . C G, 846.64 . AS_QUALapprox=|854|0;AS_VarDP=37|35|0;BaseQRankSum=-1.300;DP=72;MQRankSum=0.000;QUALapprox=854;RAW_GT_COUNT=0,1,0;RAW_MQandDP=259200,72;ReadPosRankSum=0.749;VarDP=72 GT:AD:DP:GQ:PL:SB 0/1:37,35,0:72:99:854,0,960,965,1065,2029:17,20,17,18 +chrX 4974171 . T . . END=4974232 GT:DP:GQ:MIN_DP:PL 0/0:73:99:73:0,120,1800 +chrX 4974233 . A G, 785.64 . AS_QUALapprox=|793|0;AS_VarDP=39|34|0;BaseQRankSum=-2.420;DP=73;MQRankSum=0.000;QUALapprox=793;RAW_GT_COUNT=0,1,0;RAW_MQandDP=262800,73;ReadPosRankSum=0.603;VarDP=73 GT:AD:DP:GQ:PL:SB 0/1:39,34,0:73:99:793,0,1097,910,1197,2108:21,18,16,18 +chrX 4974234 . T . . END=4974506 GT:DP:GQ:MIN_DP:PL 0/0:56:89:56:0,89,1410 +chrX 4974507 . T C, 713.64 . AS_QUALapprox=|721|0;AS_VarDP=29|28|0;BaseQRankSum=-2.120;DP=59;MQRankSum=0.000;QUALapprox=721;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=0.263;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:29,28,0:57:99:721,0,813,808,898,1705:16,13,14,14 +chrX 4974508 . A . . END=4974521 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,120,1800 +chrX 4974522 . GTCTTTA G, 1115.60 . AS_QUALapprox=|1123|0;AS_VarDP=28|30|0;BaseQRankSum=1.204;DP=59;MQRankSum=0.000;QUALapprox=1123;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-1.391;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:28,30,0:58:99:1123,0,1085,1208,1176,2383:13,15,17,13 +chrX 4974529 . T . . END=4975004 GT:DP:GQ:MIN_DP:PL 0/0:63:44:63:0,44,1706 +chrX 4975005 . G A, 684.64 . AS_QUALapprox=|692|0;AS_VarDP=27|27|0;BaseQRankSum=-0.939;DP=56;MQRankSum=0.000;QUALapprox=692;RAW_GT_COUNT=0,1,0;RAW_MQandDP=201600,56;ReadPosRankSum=0.779;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:27,27,0:54:99:692,0,721,772,802,1575:15,12,15,12 +chrX 4975006 . A . . END=4975564 GT:DP:GQ:MIN_DP:PL 0/0:57:77:57:0,77,1180 +chrX 4975565 . C G, 712.64 . AS_QUALapprox=|720|0;AS_VarDP=21|27|0;BaseQRankSum=-0.960;DP=48;MQRankSum=0.000;QUALapprox=720;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=-0.083;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:21,27,0:48:99:720,0,554,783,635,1418:13,8,15,12 +chrX 4975566 . C . . END=4976497 GT:DP:GQ:MIN_DP:PL 0/0:54:84:54:0,84,1341 +chrX 4976498 . A G, 823.64 . AS_QUALapprox=|831|0;AS_VarDP=28|31|0;BaseQRankSum=1.719;DP=60;MQRankSum=0.000;QUALapprox=831;RAW_GT_COUNT=0,1,0;RAW_MQandDP=216000,60;ReadPosRankSum=0.699;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:28,31,0:59:99:831,0,661,914,754,1668:15,13,14,17 +chrX 4976499 . T . . END=4977166 GT:DP:GQ:MIN_DP:PL 0/0:54:96:54:0,96,1408 +chrX 4977167 . A G, 789.64 . AS_QUALapprox=|797|0;AS_VarDP=37|30|0;BaseQRankSum=0.714;DP=69;MQRankSum=0.000;QUALapprox=797;RAW_GT_COUNT=0,1,0;RAW_MQandDP=248400,69;ReadPosRankSum=0.568;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:37,30,0:67:99:797,0,1009,907,1099,2006:16,21,12,18 +chrX 4977168 . A . . END=4977227 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 4977228 . C G, 764.64 . AS_QUALapprox=|772|0;AS_VarDP=24|30|0;BaseQRankSum=-0.780;DP=54;MQRankSum=0.000;QUALapprox=772;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=-0.183;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:24,30,0:54:99:772,0,603,843,692,1535:12,12,13,17 +chrX 4977229 . T . . END=4977424 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,99,1390 +chrX 4977425 . A G, 604.64 . AS_QUALapprox=|612|0;AS_VarDP=21|23|0;BaseQRankSum=0.088;DP=44;MQRankSum=0.000;QUALapprox=612;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=-0.799;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:21,23,0:44:99:612,0,558,676,627,1302:7,14,12,11 +chrX 4977426 . A . . END=4977501 GT:DP:GQ:MIN_DP:PL 0/0:44:96:44:0,96,1290 +chrX 4977502 . T C, 1531.06 . AS_QUALapprox=|1545|0;AS_VarDP=0|46|0;DP=46;QUALapprox=1545;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1545,138,0,1545,138,1545:0,0,20,26 +chrX 4977503 . C . . END=4977941 GT:DP:GQ:MIN_DP:PL 0/0:49:45:49:0,45,1155 +chrX 4977942 . G T, 746.64 . AS_QUALapprox=|754|0;AS_VarDP=21|27|0;BaseQRankSum=-1.801;DP=51;MQRankSum=0.000;QUALapprox=754;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=0.198;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:21,27,0:48:99:754,0,586,817,667,1484:10,11,17,10 +chrX 4977943 . C . . END=4978397 GT:DP:GQ:MIN_DP:PL 0/0:51:90:51:0,90,1316 +chrX 4978398 . G T, 622.64 . AS_QUALapprox=|630|0;AS_VarDP=34|24|0;BaseQRankSum=1.763;DP=59;MQRankSum=0.000;QUALapprox=630;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-0.750;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:34,24,0:58:99:630,0,881,732,953,1685:15,19,11,13 +chrX 4978399 . T . . END=4978441 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 4978442 . G C, 727.64 . AS_QUALapprox=|735|0;AS_VarDP=35|28|0;BaseQRankSum=0.888;DP=64;MQRankSum=0.000;QUALapprox=735;RAW_GT_COUNT=0,1,0;RAW_MQandDP=230400,64;ReadPosRankSum=-0.630;VarDP=63 GT:AD:DP:GQ:PL:SB 0/1:35,28,0:63:99:735,0,892,839,977,1816:16,19,15,13 +chrX 4978443 . T . . END=4978500 GT:DP:GQ:MIN_DP:PL 0/0:56:99:56:0,119,1778 +chrX 4978501 . T G, 628.64 . AS_QUALapprox=|636|0;AS_VarDP=30|26|0;BaseQRankSum=-2.991;DP=58;MQRankSum=0.000;QUALapprox=636;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=1.274;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:30,26,0:56:99:636,0,875,726,953,1679:17,13,17,9 +chrX 4978502 . G . . END=4978738 GT:DP:GQ:MIN_DP:PL 0/0:63:99:63:0,120,1800 +chrX 4978739 . G A, 766.64 . AS_QUALapprox=|774|0;AS_VarDP=28|27|0;BaseQRankSum=1.427;DP=58;MQRankSum=0.000;QUALapprox=774;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=0.244;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:28,27,0:55:99:774,0,773,857,854,1712:11,17,12,15 +chrX 4978740 . C . . END=4978870 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,112,1529 +chrX 4978871 . G C, 627.64 . AS_QUALapprox=|635|0;AS_VarDP=30|18|0;BaseQRankSum=2.085;DP=49;MQRankSum=0.000;QUALapprox=635;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=0.313;VarDP=48 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:30,18,0:48:99:0|1:4978871_G_C:635,0,1078,725,1132,1857:4978871:19,11,10,8 +chrX 4978872 . A . . END=4978892 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,120,1800 +chrX 4978893 . C T, 687.64 . AS_QUALapprox=|695|0;AS_VarDP=27|20|0;BaseQRankSum=0.502;DP=47;MQRankSum=0.000;QUALapprox=695;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=-0.323;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:27,20,0:47:99:0|1:4978871_G_C:695,0,1002,776,1062,1839:4978871:17,10,11,9 +chrX 4978894 . T . . END=4979467 GT:DP:GQ:MIN_DP:PL 0/0:60:99:60:0,120,1624 +chrX 4979468 . T C, 774.64 . AS_QUALapprox=|782|0;AS_VarDP=20|30|0;BaseQRankSum=-1.235;DP=51;MQRankSum=0.000;QUALapprox=782;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=-0.634;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:20,30,0:50:99:782,0,505,842,595,1437:11,9,16,14 +chrX 4979469 . A . . END=4979709 GT:DP:GQ:MIN_DP:PL 0/0:52:95:52:0,95,1231 +chrX 4979710 . G A, 588.64 . AS_QUALapprox=|596|0;AS_VarDP=18|23|0;BaseQRankSum=-0.850;DP=43;MQRankSum=0.000;QUALapprox=596;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154800,43;ReadPosRankSum=-0.749;VarDP=41 GT:AD:DP:GQ:PL:SB 0/1:18,23,0:41:99:596,0,462,650,531,1182:9,9,13,10 +chrX 4979711 . T . . END=4979737 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,111,1251 +chrX 4979738 . A G, 1494.06 . AS_QUALapprox=|1508|0;AS_VarDP=0|46|0;DP=46;QUALapprox=1508;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1508,138,0,1508,138,1508:0,0,26,20 +chrX 4979739 . A . . END=4979915 GT:DP:GQ:MIN_DP:PL 0/0:48:92:48:0,92,1226 +chrX 4979916 . G A, 546.64 . AS_QUALapprox=|554|0;AS_VarDP=37|23|0;BaseQRankSum=-1.522;DP=61;MQRankSum=0.823;QUALapprox=554;RAW_GT_COUNT=0,1,0;RAW_MQandDP=218401,61;ReadPosRankSum=0.175;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:37,23,0:60:99:554,0,1076,666,1145,1810:23,14,10,13 +chrX 4979917 . T . . END=4980694 GT:DP:GQ:MIN_DP:PL 0/0:51:76:51:0,76,1269 +chrX 4980695 . A AT, 1980.03 . AS_QUALapprox=|1994|0;AS_VarDP=0|63|0;DP=65;QUALapprox=1994;RAW_GT_COUNT=0,0,1;RAW_MQandDP=234000,65;VarDP=63 GT:AD:DP:GQ:PL:SB 1/1:0,63,0:63:99:1994,189,0,1995,189,1995:0,0,40,23 +chrX 4980696 . T . . END=4980792 GT:DP:GQ:MIN_DP:PL 0/0:65:99:65:0,120,1800 +chrX 4980793 . A G, 675.64 . AS_QUALapprox=|683|0;AS_VarDP=34|26|0;BaseQRankSum=0.786;DP=61;MQRankSum=0.000;QUALapprox=683;RAW_GT_COUNT=0,1,0;RAW_MQandDP=219600,61;ReadPosRankSum=0.724;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:34,26,0:60:99:683,0,918,785,996,1781:17,17,11,15 +chrX 4980794 . A . . END=4980991 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 4980992 . A T, 721.64 . AS_QUALapprox=|729|0;AS_VarDP=29|27|0;BaseQRankSum=-0.095;DP=58;MQRankSum=0.000;QUALapprox=729;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=0.197;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:29,27,0:56:99:729,0,799,816,880,1696:13,16,9,18 +chrX 4980993 . A . . END=4981225 GT:DP:GQ:MIN_DP:PL 0/0:47:86:47:0,86,1206 +chrX 4981226 . C T, 648.64 . AS_QUALapprox=|656|0;AS_VarDP=22|24|0;BaseQRankSum=0.151;DP=47;MQRankSum=0.000;QUALapprox=656;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=0.814;VarDP=46 GT:AD:DP:GQ:PL:SB 0/1:22,24,0:46:99:656,0,586,722,658,1381:10,12,14,10 +chrX 4981227 . A . . END=4981318 GT:DP:GQ:MIN_DP:PL 0/0:57:99:57:0,120,1800 +chrX 4981319 . G A, 608.64 . AS_QUALapprox=|616|0;AS_VarDP=26|25|0;BaseQRankSum=-1.938;DP=55;MQRankSum=0.000;QUALapprox=616;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-0.509;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:26,25,0:51:99:616,0,711,694,786,1479:10,16,13,12 +chrX 4981320 . A . . END=4981584 GT:DP:GQ:MIN_DP:PL 0/0:46:93:46:0,93,1320 +chrX 4981585 . T C, 1564.06 . AS_QUALapprox=|1578|0;AS_VarDP=0|47|0;DP=48;QUALapprox=1578;RAW_GT_COUNT=0,0,1;RAW_MQandDP=172800,48;VarDP=47 GT:AD:DP:GQ:PL:SB 1/1:0,47,0:47:99:1578,141,0,1578,141,1578:0,0,25,22 +chrX 4981586 . A . . END=4981619 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,108,1285 +chrX 4981620 . A G, 638.64 . AS_QUALapprox=|646|0;AS_VarDP=21|23|0;BaseQRankSum=0.598;DP=44;MQRankSum=0.000;QUALapprox=646;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=-0.929;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:21,23,0:44:99:646,0,568,709,637,1346:13,8,14,9 +chrX 4981621 . G . . END=4981886 GT:DP:GQ:MIN_DP:PL 0/0:47:79:47:0,79,1121 +chrX 4981887 . G A, 1518.06 . AS_QUALapprox=|1532|0;AS_VarDP=0|46|0;DP=46;QUALapprox=1532;RAW_GT_COUNT=0,0,1;RAW_MQandDP=165600,46;VarDP=46 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1532,138,0,1532,138,1532:0,0,22,24 +chrX 4981888 . G . . END=4982091 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,100,1201 +chrX 4982092 . C T, 676.64 . AS_QUALapprox=|684|0;AS_VarDP=20|25|0;BaseQRankSum=-0.979;DP=48;MQRankSum=0.000;QUALapprox=684;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=-0.286;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:20,25,0:45:99:684,0,510,743,586,1329:12,8,13,12 +chrX 4982093 . T . . END=4982541 GT:DP:GQ:MIN_DP:PL 0/0:51:80:51:0,80,1137 +chrX 4982542 . G A, 641.64 . AS_QUALapprox=|649|0;AS_VarDP=20|23|0;BaseQRankSum=0.169;DP=43;MQRankSum=0.000;QUALapprox=649;RAW_GT_COUNT=0,1,0;RAW_MQandDP=154800,43;ReadPosRankSum=0.841;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:20,23,0:43:99:649,0,546,709,615,1324:10,10,12,11 +chrX 4982543 . A . . END=4982919 GT:DP:GQ:MIN_DP:PL 0/0:47:87:47:0,87,1207 +chrX 4982920 . A G, 260.64 . AS_QUALapprox=|268|0;AS_VarDP=38|13|0;BaseQRankSum=-1.106;DP=55;MQRankSum=0.000;QUALapprox=268;RAW_GT_COUNT=0,1,0;RAW_MQandDP=198000,55;ReadPosRankSum=-0.735;VarDP=51 GT:AD:DP:GQ:PL:SB 0/1:38,13,0:51:99:268,0,1128,383,1167,1549:19,19,5,8 +chrX 4982921 . T . . END=4983080 GT:DP:GQ:MIN_DP:PL 0/0:61:99:61:0,120,1800 +chrX 4983081 . A G, 348.64 . AS_QUALapprox=|356|0;AS_VarDP=44|16|0;BaseQRankSum=1.238;DP=62;MQRankSum=0.000;QUALapprox=356;RAW_GT_COUNT=0,1,0;RAW_MQandDP=223200,62;ReadPosRankSum=-0.184;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:44,16,0:60:99:356,0,1199,487,1247,1734:21,23,9,7 +chrX 4983082 . A . . END=4983203 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,120,1800 +chrX 4983204 . A G, 1483.06 . AS_QUALapprox=|1497|0;AS_VarDP=0|49|0;DP=52;QUALapprox=1497;RAW_GT_COUNT=0,0,1;RAW_MQandDP=187200,52;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1497,146,0,1497,146,1497:0,0,25,24 +chrX 4983205 . G . . END=4983486 GT:DP:GQ:MIN_DP:PL 0/0:42:59:42:0,59,1083 +chrX 4983487 . G A, 457.64 . AS_QUALapprox=|465|0;AS_VarDP=29|18|0;BaseQRankSum=1.591;DP=49;MQRankSum=0.000;QUALapprox=465;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=-0.033;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:29,18,0:47:99:465,0,762,552,816,1367:16,13,10,8 +chrX 4983488 . T . . END=4983638 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,105,1380 +chrX 4983639 . T C, 592.64 . AS_QUALapprox=|600|0;AS_VarDP=19|21|0;BaseQRankSum=0.712;DP=46;MQRankSum=0.000;QUALapprox=600;RAW_GT_COUNT=0,1,0;RAW_MQandDP=165600,46;ReadPosRankSum=-0.190;VarDP=40 GT:AD:DP:GQ:PL:SB 0/1:19,21,0:40:99:600,0,520,657,583,1240:13,6,10,11 +chrX 4983640 . A . . END=4983656 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,117,1320 +chrX 4983657 . G A, 760.64 . AS_QUALapprox=|768|0;AS_VarDP=23|27|0;BaseQRankSum=1.089;DP=50;MQRankSum=0.000;QUALapprox=768;RAW_GT_COUNT=0,1,0;RAW_MQandDP=180000,50;ReadPosRankSum=-0.467;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:23,27,0:50:99:768,0,608,837,689,1527:15,8,14,13 +chrX 4983658 . A . . END=4984106 GT:DP:GQ:MIN_DP:PL 0/0:51:59:51:0,59,1207 +chrX 4984107 . T C, 578.64 . AS_QUALapprox=|586|0;AS_VarDP=14|22|0;BaseQRankSum=-2.295;DP=36;MQRankSum=0.000;QUALapprox=586;RAW_GT_COUNT=0,1,0;RAW_MQandDP=129600,36;ReadPosRankSum=-0.032;VarDP=36 GT:AD:DP:GQ:PL:SB 0/1:14,22,0:36:99:586,0,379,628,445,1073:7,7,9,13 +chrX 4984108 . G . . END=4984190 GT:DP:GQ:MIN_DP:PL 0/0:36:90:36:0,90,1111 +chrX 4984191 . T C, 694.64 . AS_QUALapprox=|702|0;AS_VarDP=23|26|0;BaseQRankSum=2.059;DP=54;MQRankSum=0.000;QUALapprox=702;RAW_GT_COUNT=0,1,0;RAW_MQandDP=194400,54;ReadPosRankSum=0.100;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:23,26,0:49:99:702,0,538,771,615,1386:6,17,17,9 +chrX 4984192 . C . . END=4984353 GT:DP:GQ:MIN_DP:PL 0/0:53:99:53:0,106,1380 +chrX 4984354 . G A, 830.64 . AS_QUALapprox=|838|0;AS_VarDP=25|31|0;BaseQRankSum=-1.451;DP=59;MQRankSum=0.000;QUALapprox=838;RAW_GT_COUNT=0,1,0;RAW_MQandDP=212400,59;ReadPosRankSum=-0.272;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:25,31,0:56:99:838,0,681,913,774,1687:17,8,16,15 +chrX 4984355 . C . . END=4984451 GT:DP:GQ:MIN_DP:PL 0/0:52:99:52:0,114,1609 +chrX 4984452 . C G, 642.64 . AS_QUALapprox=|650|0;AS_VarDP=24|24|0;BaseQRankSum=0.080;DP=48;MQRankSum=0.000;QUALapprox=650;RAW_GT_COUNT=0,1,0;RAW_MQandDP=172800,48;ReadPosRankSum=2.558;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:24,24,0:48:99:650,0,635,722,707,1429:14,10,13,11 +chrX 4984453 . A . . END=4984505 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,109,1448 +chrX 4984506 . T C, 700.64 . AS_QUALapprox=|708|0;AS_VarDP=20|27|0;BaseQRankSum=-1.263;DP=49;MQRankSum=0.000;QUALapprox=708;RAW_GT_COUNT=0,1,0;RAW_MQandDP=176400,49;ReadPosRankSum=-0.538;VarDP=47 GT:AD:DP:GQ:PL:SB 0/1:20,27,0:47:99:708,0,507,767,588,1355:11,9,10,17 +chrX 4984507 . T . . END=4984536 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,114,1485 +chrX 4984537 . C T, 676.64 . AS_QUALapprox=|684|0;AS_VarDP=27|26|0;BaseQRankSum=0.251;DP=53;MQRankSum=0.000;QUALapprox=684;RAW_GT_COUNT=0,1,0;RAW_MQandDP=190800,53;ReadPosRankSum=0.151;VarDP=53 GT:AD:DP:GQ:PL:SB 0/1:27,26,0:53:99:684,0,709,766,787,1553:15,12,8,18 +chrX 4984538 . G . . END=4984564 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,120,1800 +chrX 4984565 . G C, 566.64 . AS_QUALapprox=|574|0;AS_VarDP=28|22|0;BaseQRankSum=0.638;DP=51;MQRankSum=0.000;QUALapprox=574;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=0.460;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:28,22,0:50:99:574,0,738,657,804,1462:14,14,5,17 +chrX 4984566 . C . . END=4985029 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,115,1530 +chrX 4985030 . C T, 643.64 . AS_QUALapprox=|651|0;AS_VarDP=34|24|0;BaseQRankSum=1.330;DP=58;MQRankSum=0.000;QUALapprox=651;RAW_GT_COUNT=0,1,0;RAW_MQandDP=208800,58;ReadPosRankSum=0.869;VarDP=58 GT:AD:DP:GQ:PL:SB 0/1:34,24,0:58:99:651,0,928,752,1000,1752:22,12,12,12 +chrX 4985031 . G . . END=4985237 GT:DP:GQ:MIN_DP:PL 0/0:54:92:54:0,92,1520 +chrX 4985238 . T C, 543.64 . AS_QUALapprox=|551|0;AS_VarDP=28|22|0;BaseQRankSum=0.747;DP=51;MQRankSum=0.000;QUALapprox=551;RAW_GT_COUNT=0,1,0;RAW_MQandDP=183600,51;ReadPosRankSum=0.714;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:28,22,0:50:99:551,0,704,634,769,1403:15,13,12,10 +chrX 4985239 . A . . END=4985481 GT:DP:GQ:MIN_DP:PL 0/0:53:91:53:0,91,1330 +chrX 4985482 . G A, 554.64 . AS_QUALapprox=|562|0;AS_VarDP=19|15|0;BaseQRankSum=0.839;DP=36;MQRankSum=0.000;QUALapprox=562;RAW_GT_COUNT=0,1,0;RAW_MQandDP=129600,36;ReadPosRankSum=0.746;VarDP=34 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:19,15,0:34:99:0|1:4985482_G_A:562,0,742,620,787,1407:4985482:7,12,10,5 +chrX 4985483 . T . . END=4985490 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1350 +chrX 4985491 . C A, 550.64 . AS_QUALapprox=|558|0;AS_VarDP=20|15|0;BaseQRankSum=0.378;DP=36;MQRankSum=0.000;QUALapprox=558;RAW_GT_COUNT=0,1,0;RAW_MQandDP=129600,36;ReadPosRankSum=0.900;VarDP=35 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:20,15,0:35:99:0|1:4985482_G_A:558,0,774,618,819,1438:4985482:8,12,9,6 +chrX 4985492 . C . . END=4985622 GT:DP:GQ:MIN_DP:PL 0/0:41:83:41:0,83,1142 +chrX 4985623 . G T, 904.64 . AS_QUALapprox=|912|0;AS_VarDP=23|24|0;BaseQRankSum=0.030;DP=47;MQRankSum=0.000;QUALapprox=912;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=-0.309;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,24,0:47:99:0|1:4985623_G_T:912,0,894,981,966,1947:4985623:13,10,10,14 +chrX 4985624 . A T, 904.64 . AS_QUALapprox=|912|0;AS_VarDP=23|24|0;BaseQRankSum=-1.369;DP=47;MQRankSum=0.000;QUALapprox=912;RAW_GT_COUNT=0,1,0;RAW_MQandDP=169200,47;ReadPosRankSum=-0.266;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:23,24,0:47:99:0|1:4985623_G_T:912,0,894,981,966,1947:4985623:13,10,10,14 +chrX 4985625 . G . . END=4985648 GT:DP:GQ:MIN_DP:PL 0/0:47:99:47:0,117,1755 +chrX 4985649 . A G, 545.64 . AS_QUALapprox=|553|0;AS_VarDP=23|21|0;BaseQRankSum=-0.598;DP=45;MQRankSum=0.000;QUALapprox=553;RAW_GT_COUNT=0,1,0;RAW_MQandDP=162000,45;ReadPosRankSum=1.810;VarDP=44 GT:AD:DP:GQ:PL:SB 0/1:23,21,0:44:99:553,0,647,622,710,1332:14,9,9,12 +chrX 4985650 . G . . END=4986104 GT:DP:GQ:MIN_DP:PL 0/0:48:90:48:0,90,1232 +chrX 4986105 . C A, 1625.06 . AS_QUALapprox=|1639|0;AS_VarDP=0|48|0;DP=49;QUALapprox=1639;RAW_GT_COUNT=0,0,1;RAW_MQandDP=176400,49;VarDP=48 GT:AD:DP:GQ:PL:SB 1/1:0,48,0:48:99:1639,144,0,1639,144,1639:0,0,24,24 +chrX 4986106 . T . . END=4986676 GT:DP:GQ:MIN_DP:PL 0/0:51:24:44:0,24,360 +chrX 4986677 . A . . END=4986887 GT:DP:GQ:MIN_DP:PL 0/0:6:0:6:0,0,0 +chrX 4986888 . T . . END=4986888 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,243 +chrX 4986889 . A . . END=4986892 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,0 +chrX 4986893 . G . . END=4986893 GT:DP:GQ:MIN_DP:PL 0/0:8:24:8:0,24,268 +chrX 4986894 . G . . END=4986898 GT:DP:GQ:MIN_DP:PL 0/0:9:0:9:0,0,0 +chrX 4986899 . G . . END=4986900 GT:DP:GQ:MIN_DP:PL 0/0:9:24:9:0,24,268 +chrX 4986901 . C . . END=4986901 GT:DP:GQ:MIN_DP:PL 0/0:9:0:9:0,0,0 +chrX 4986902 . T . . END=4986902 GT:DP:GQ:MIN_DP:PL 0/0:9:27:9:0,27,313 +chrX 4986903 . C . . END=4986905 GT:DP:GQ:MIN_DP:PL 0/0:9:0:9:0,0,0 +chrX 4986906 . T . . END=4986906 GT:DP:GQ:MIN_DP:PL 0/0:10:30:10:0,30,338 +chrX 4986907 . C . . END=4986907 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,0 +chrX 4986908 . T . . END=4986908 GT:DP:GQ:MIN_DP:PL 0/0:12:36:12:0,36,407 +chrX 4986909 . C . . END=4986918 GT:DP:GQ:MIN_DP:PL 0/0:15:0:15:0,0,0 +chrX 4986919 . T . . END=4986920 GT:DP:GQ:MIN_DP:PL 0/0:21:60:21:0,60,690 +chrX 4986921 . A . . END=4986921 GT:DP:GQ:MIN_DP:PL 0/0:21:0:21:0,0,0 +chrX 4986922 . T . . END=4986922 GT:DP:GQ:MIN_DP:PL 0/0:22:66:22:0,66,755 +chrX 4986923 . C . . END=4986926 GT:DP:GQ:MIN_DP:PL 0/0:22:0:22:0,0,0 +chrX 4986927 . C . . END=4986927 GT:DP:GQ:MIN_DP:PL 0/0:22:66:22:0,66,694 +chrX 4986928 . C . . END=4986931 GT:DP:GQ:MIN_DP:PL 0/0:23:0:23:0,0,0 +chrX 4986932 . T . . END=4986932 GT:DP:GQ:MIN_DP:PL 0/0:24:72:24:0,72,824 +chrX 4986933 . C . . END=4986940 GT:DP:GQ:MIN_DP:PL 0/0:25:0:25:0,0,0 +chrX 4986941 . C . . END=4986942 GT:DP:GQ:MIN_DP:PL 0/0:28:81:28:0,81,909 +chrX 4986943 . A . . END=4986943 GT:DP:GQ:MIN_DP:PL 0/0:29:0:29:0,0,0 +chrX 4986944 . A . . END=4986944 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,1023 +chrX 4986945 . G . . END=4986946 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,0 +chrX 4986947 . G . . END=4986947 GT:DP:GQ:MIN_DP:PL 0/0:31:93:31:0,93,1048 +chrX 4986948 . C . . END=4986949 GT:DP:GQ:MIN_DP:PL 0/0:32:0:32:0,0,0 +chrX 4986950 . G . . END=4986950 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1137 +chrX 4986951 . G . . END=4986961 GT:DP:GQ:MIN_DP:PL 0/0:38:0:38:0,0,0 +chrX 4986962 . G . . END=4986963 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,117,1315 +chrX 4986964 . G . . END=4986964 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,0 +chrX 4986965 . A . . END=4986965 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,120,1800 +chrX 4986966 . G . . END=4986968 GT:DP:GQ:MIN_DP:PL 0/0:41:0:41:0,0,0 +chrX 4986969 . A . . END=4986969 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,120,1800 +chrX 4986970 . C . . END=4986973 GT:DP:GQ:MIN_DP:PL 0/0:44:0:44:0,0,0 +chrX 4986974 . G . . END=4986974 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,107,1420 +chrX 4986975 . C . . END=4986981 GT:DP:GQ:MIN_DP:PL 0/0:48:0:48:0,0,0 +chrX 4986982 . T . . END=4988521 GT:DP:GQ:MIN_DP:PL 0/0:58:99:58:0,101,1380 +chrX 4988522 . G C, 1710.06 . AS_QUALapprox=|1724|0;AS_VarDP=0|54|0;DP=56;QUALapprox=1724;RAW_GT_COUNT=0,0,1;RAW_MQandDP=196936,56;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:1724,161,0,1724,161,1724:0,0,26,28 +chrX 4988523 . G . . END=4988589 GT:DP:GQ:MIN_DP:PL 0/0:42:71:42:0,71,1080 +chrX 4988590 . T . . END=4988590 GT:DP:GQ:MIN_DP:PL 0/0:35:12:35:0,12,920 +chrX 4988591 . C . . END=4988596 GT:DP:GQ:MIN_DP:PL 0/0:32:41:32:0,41,894 +chrX 4988597 . C . . END=4988597 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,765 +chrX 4988598 . A . . END=4989097 GT:DP:GQ:MIN_DP:PL 0/0:29:28:26:0,28,664 +chrX 4989098 . TCCTCCTTC T, 829.03 . AS_QUALapprox=|843|0;AS_VarDP=0|20|0;DP=28;QUALapprox=843;RAW_GT_COUNT=0,0,1;RAW_MQandDP=100800,28;VarDP=20 GT:AD:DP:GQ:PL:SB 1/1:0,20,0:20:60:843,60,0,843,60,843:0,0,3,17 +chrX 4989107 . C . . END=4989111 GT:DP:GQ:MIN_DP:PL 0/0:27:51:27:0,51,765 +chrX 4989112 . T . . END=4989112 GT:DP:GQ:MIN_DP:PL 0/0:23:0:23:0,0,411 +chrX 4989113 . T . . END=4989114 GT:DP:GQ:MIN_DP:PL 0/0:24:54:24:0,54,810 +chrX 4989115 . C . . END=4989116 GT:DP:GQ:MIN_DP:PL 0/0:23:0:23:0,0,506 +chrX 4989117 . T . . END=4989219 GT:DP:GQ:MIN_DP:PL 0/0:22:22:20:0,22,555 +chrX 4989220 . G . . END=4989220 GT:DP:GQ:MIN_DP:PL 0/0:23:1:23:0,1,572 +chrX 4989221 . C . . END=4989281 GT:DP:GQ:MIN_DP:PL 0/0:25:35:23:0,35,610 +chrX 4989282 . A C, 42.64 . AS_QUALapprox=|50|0;AS_VarDP=14|6|0;BaseQRankSum=-2.103;DP=24;MQRankSum=0.000;QUALapprox=50;RAW_GT_COUNT=0,1,0;RAW_MQandDP=83425,24;ReadPosRankSum=2.645;VarDP=20 GT:AD:DP:GQ:PL:SB 0/1:14,6,0:20:50:50,0,354,90,370,460:8,6,4,2 +chrX 4989283 . T . . END=4989328 GT:DP:GQ:MIN_DP:PL 0/0:25:25:24:0,25,609 +chrX 4989329 . A . . END=4989329 GT:DP:GQ:MIN_DP:PL 0/0:28:5:28:0,5,624 +chrX 4989330 . T . . END=4989335 GT:DP:GQ:MIN_DP:PL 0/0:27:47:27:0,47,714 +chrX 4989336 . A . . END=4989336 GT:DP:GQ:MIN_DP:PL 0/0:29:0:29:0,0,659 +chrX 4989337 . T . . END=4989337 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,993 +chrX 4989338 . G . . END=4989338 GT:DP:GQ:MIN_DP:PL 0/0:28:10:28:0,10,694 +chrX 4989339 . C . . END=4989368 GT:DP:GQ:MIN_DP:PL 0/0:35:63:35:0,63,723 +chrX 4989369 . A . . END=4989369 GT:DP:GQ:MIN_DP:PL 0/0:33:0:33:0,0,626 +chrX 4989370 . C . . END=4989694 GT:DP:GQ:MIN_DP:PL 0/0:46:45:46:0,45,972 +chrX 4989695 . T A, 1558.06 . AS_QUALapprox=|1572|0;AS_VarDP=0|49|0;DP=50;QUALapprox=1572;RAW_GT_COUNT=0,0,1;RAW_MQandDP=180000,50;VarDP=49 GT:AD:DP:GQ:PL:SB 1/1:0,49,0:49:99:1572,146,0,1572,146,1572:0,0,23,26 +chrX 4989696 . T . . END=4990001 GT:DP:GQ:MIN_DP:PL 0/0:54:97:54:0,97,1549 +chrX 4990002 . G A, 1707.06 . AS_QUALapprox=|1721|0;AS_VarDP=0|55|0;DP=57;QUALapprox=1721;RAW_GT_COUNT=0,0,1;RAW_MQandDP=205200,57;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,55,0:55:99:1721,164,0,1721,164,1721:0,0,26,29 +chrX 4990003 . A . . END=4990470 GT:DP:GQ:MIN_DP:PL 0/0:59:99:59:0,107,1504 +chrX 4990471 . C CTTTG, 3329.03 . AS_QUALapprox=|3343|0;AS_VarDP=1|75|0;BaseQRankSum=1.582;DP=79;MQRankSum=0.000;QUALapprox=3343;RAW_GT_COUNT=0,0,1;RAW_MQandDP=284400,79;ReadPosRankSum=1.664;VarDP=76 GT:AD:DP:GQ:PL:SB 1/1:1,75,0:76:99:3343,219,0,3345,226,3352:1,0,38,37 +chrX 4990472 . T . . END=4990504 GT:DP:GQ:MIN_DP:PL 0/0:74:99:74:0,120,1800 +chrX 4990505 . A G, 950.64 . AS_QUALapprox=|958|0;AS_VarDP=37|36|0;BaseQRankSum=-0.591;DP=74;MQRankSum=0.000;QUALapprox=958;RAW_GT_COUNT=0,1,0;RAW_MQandDP=266400,74;ReadPosRankSum=0.877;VarDP=73 GT:AD:DP:GQ:PL:SB 0/1:37,36,0:73:99:958,0,985,1068,1093,2161:19,18,18,18 +chrX 4990506 . T . . END=4990745 GT:DP:GQ:MIN_DP:PL 0/0:62:72:62:0,72,1509 +chrX 4990746 . A T, 1934.06 . AS_QUALapprox=|1948|0;AS_VarDP=0|58|0;DP=60;QUALapprox=1948;RAW_GT_COUNT=0,0,1;RAW_MQandDP=216000,60;VarDP=58 GT:AD:DP:GQ:PL:SB 1/1:0,58,0:58:99:1948,174,0,1948,174,1948:0,0,26,32 +chrX 4990747 . T . . END=4992002 GT:DP:GQ:MIN_DP:PL 0/0:55:76:55:0,76,1285 +chrX 4992003 . C T, 593.64 . AS_QUALapprox=|601|0;AS_VarDP=20|23|0;BaseQRankSum=0.162;DP=44;MQRankSum=0.000;QUALapprox=601;RAW_GT_COUNT=0,1,0;RAW_MQandDP=158400,44;ReadPosRankSum=-2.326;VarDP=43 GT:AD:DP:GQ:PL:SB 0/1:20,23,0:43:99:601,0,512,661,580,1241:10,10,13,10 +chrX 4992004 . A . . END=4992039 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,111,1290 +chrX 4992040 . T C, 1771.06 . AS_QUALapprox=|1785|0;AS_VarDP=0|54|0;DP=55;QUALapprox=1785;RAW_GT_COUNT=0,0,1;RAW_MQandDP=198000,55;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,54,0:54:99:1785,162,0,1785,162,1785:0,0,29,25 +chrX 4992041 . C . . END=4992063 GT:DP:GQ:MIN_DP:PL 0/0:48:99:48:0,114,1470 +chrX 4992064 . T A, 1341.06 . 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AT A 231.97 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=6.95;BaseQRankSum=-0.353;DP=111;ExcessHet=0.0000;FS=4.978;MQ=58.65;MQRankSum=0.787;QD=6.95;ReadPosRankSum=0.343;SOR=0.200;VarDP=39 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:59:99:59:.:.:0,450 0|1:23,16:39:99:.:0|1:1000523_AT_A:271,0,363:1000523:7,16,8,8 +chrX 1000524 . T A,* 3280 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=49,16;AS_QD=25.36,0.00;DP=85;ExcessHet=0.0000;FS=0.000;MQ=58.98;QD=50.92;SOR=1.342;VarDP=65 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,26,0:26:99:.:.:1086,0,948:.:0,0,6,12 1|2:0,23,16:39:99:1|0:1000523_AT_A:2224,426,271,519,0,363:1000523:0,0,15,24 +chrX 1000527 . T A 3804 . AC=3;AF=1.00;AN=3;AS_AltDP=86;AS_QD=30.97;DP=88;ExcessHet=0.0000;FS=0.000;MQ=59.01;QD=44.58;SOR=0.947;VarDP=86 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,34:34:99:.:.:1495,0:.:0,0,14,20 1|1:0,52:52:99:0|1:1000523_AT_A:2339,157,0:1000523:0,0,24,28 +chrX 1001211 . C CA 42.97 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=2.48;BaseQRankSum=-0.534;DP=106;ExcessHet=0.0000;FS=14.829;MQ=59.12;MQRankSum=-1.189;QD=2.48;ReadPosRankSum=-1.41;SOR=1.012;VarDP=33 GT:AD:DP:GQ:MIN_DP:PL:SB 1:14,19:33:82:.:82,0:11,3,7,12 0/0:.:54:28:49:0,28,1314 +chrX 1002155 . C T 3508 . AC=3;AF=1.00;AN=3;AS_AltDP=106;AS_QD=33.38;DP=111;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.38;SOR=1.189;VarDP=106 GT:AD:DP:GQ:PL:SB 1:0,42:42:99:1450,0:0,0,23,19 1/1:0,64:64:99:2088,192,0:0,0,41,23 +chrX 1002419 . A G 724 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=7.39;BaseQRankSum=-0.026;DP=106;ExcessHet=0.0000;FS=6.303;MQ=59.93;MQRankSum=0;QD=7.39;ReadPosRankSum=0.549;SOR=0.808;VarDP=102 GT:AD:DP:GQ:PL:SB 1:23,28:51:99:108,0:8,15,14,14 0/1:26,25:51:99:646,0,731:13,13,16,9 +chrX 1003019 . T C 3761 . AC=3;AF=1.00;AN=3;AS_AltDP=116;AS_QD=32.68;DP=122;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.68;SOR=1.047;VarDP=116 GT:AD:DP:GQ:PL:SB 1:0,53:53:99:1782,0:0,0,25,28 1/1:0,63:63:99:2009,188,0:0,0,24,39 +chrX 1003441 . A G 3045 . AC=3;AF=1.00;AN=3;AS_AltDP=96;AS_QD=32.03;DP=99;ExcessHet=0.0000;FS=0.000;MQ=59.74;QD=32.03;SOR=0.870;VarDP=96 GT:AD:DP:GQ:PL:SB 1:0,51:51:99:1641,0:0,0,22,29 1/1:0,45:45:99:1434,135,0:0,0,22,23 +chrX 1003976 . G A 455 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=9.33;BaseQRankSum=0.223;DP=111;ExcessHet=0.0000;FS=0.000;MQ=59.68;MQRankSum=0.799;QD=9.33;ReadPosRankSum=-0.257;SOR=0.582;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:58:99:58:0,373 0/1:33,19:52:99:.:485,0,935:20,13,11,8 +chrX 1004323 . CTCTT C 692.97 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=17.85;BaseQRankSum=1.72;DP=102;ExcessHet=0.0000;FS=10.428;MQ=60.00;MQRankSum=0;QD=17.85;ReadPosRankSum=-0.556;SOR=0.080;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:58:99:58:0,373 0/1:22,19:41:99:.:732,0,856:4,18,9,10 +chrX 1004381 . C CTCTT 3701.97 . AC=3;AF=1.00;AN=3;AS_AltDP=85;AS_QD=30.62;DP=102;ExcessHet=0.0000;FS=0.000;MQ=59.71;QD=44.01;SOR=0.922;VarDP=85 GT:AD:DP:GQ:PL:SB 1:0,43:43:99:1908,0:0,0,20,23 1/1:0,42:42:99:1833,126,0:0,0,18,24 +chrX 1004402 . C CTT,A 1401 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=16,26;AS_QD=32.13,26.80;DP=100;ExcessHet=0.0000;FS=0.000;MQ=59.32;QD=34.07;SOR=1.127;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:51:99:51:0,540,540 1/2:0,16,26:42:99:.:1431,971,917,458,0,765:0,0,25,17 +chrX 1004407 . T TA 944.97 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=19.68;BaseQRankSum=-1.565;DP=102;ExcessHet=0.0000;FS=0.000;MQ=59.34;MQRankSum=1.641;QD=19.68;ReadPosRankSum=0.28;SOR=0.660;VarDP=50 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:51:99:51:.:.:0,540 0|1:22,28:50:99:.:0|1:1004407_T_TA:984,0,801:1004407:12,10,15,13 +chrX 1004412 . T TA 797.97 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=18.20;BaseQRankSum=-0.827;DP=99;ExcessHet=0.0000;FS=1.162;MQ=59.30;MQRankSum=1.525;QD=18.20;ReadPosRankSum=1.023;SOR=1.041;VarDP=46 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:51:99:51:.:.:0,540 0|1:22,24:46:99:.:0|1:1004407_T_TA:837,0,813:1004407:12,10,15,9 +chrX 1004528 . A G 347 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=6.73;BaseQRankSum=-0.46;DP=113;ExcessHet=0.0000;FS=1.053;MQ=59.83;MQRankSum=-1.122;QD=6.73;ReadPosRankSum=-0.906;SOR=0.493;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 1:22,34:56:99:.:377,0:13,9,18,16 0/0:.:56:55:56:0,55,1166 +chrX 1004768 . AATAT A 719.97 . AC=1;AF=0.333;AN=3;AS_AltDP=48;AS_QD=9.61;BaseQRankSum=-0.282;DP=144;ExcessHet=0.0000;FS=6.018;MQ=60.00;MQRankSum=0;QD=9.61;ReadPosRankSum=-1.843;SOR=1.266;VarDP=79 GT:AD:DP:GQ:MIN_DP:PL:SB 1:31,48:79:99:.:759,0:15,16,30,18 0/0:.:56:55:56:0,55,1166 +chrX 1004902 . T TAAG 1744.97 . AC=2;AF=0.667;AN=3;AS_AltDP=77;AS_QD=12.65;BaseQRankSum=0.971;DP=155;ExcessHet=0.0000;FS=8.799;MQ=60.00;MQRankSum=0;QD=12.65;ReadPosRankSum=0.794;SOR=0.462;VarDP=141 GT:AD:DP:GQ:PL:SB 1:33,40:73:99:334,0:20,13,19,21 0/1:31,37:68:99:1450,0,1191:19,12,18,19 +chrX 1005166 . T C 672 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=14.33;BaseQRankSum=0.933;DP=126;ExcessHet=0.0000;FS=1.117;MQ=60.00;MQRankSum=0;QD=14.33;ReadPosRankSum=1.381;SOR=0.476;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:76:99:76:0,1619 0/1:24,25:49:99:.:702,0,646:9,15,11,14 +chrX 1005288 . G C 807 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=8.05;BaseQRankSum=2.717;DP=109;ExcessHet=0.0000;FS=4.750;MQ=59.87;MQRankSum=0;QD=8.05;ReadPosRankSum=1.252;SOR=0.605;VarDP=104 GT:AD:DP:GQ:PL:SB 1:21,26:47:99:154,0:13,8,12,14 0/1:30,27:57:99:683,0,652:16,14,13,14 +chrX 1005396 . G T 761 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=13.41;BaseQRankSum=-2.005;DP=114;ExcessHet=0.0000;FS=3.662;MQ=59.63;MQRankSum=-0.916;QD=13.41;ReadPosRankSum=1.23;SOR=0.321;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:53:99:53:0,1270 0/1:28,31:59:99:.:791,0,742:18,10,16,15 +chrX 1005591 . C T 184 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=4.76;BaseQRankSum=-0.948;DP=76;ExcessHet=0.0000;FS=4.364;MQ=59.25;MQRankSum=0.257;QD=4.76;ReadPosRankSum=-0.609;SOR=0.537;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 1:19,26:45:99:.:214,0:12,7,12,14 0/0:.:32:38:31:0,38,875 +chrX 1005628 . CAAAAAAAAAA C,CAAAAAA,CAAAA 1002.97 . AC=1,1,1;AF=0.333,0.333,0.333;AN=3;AS_AltDP=23,10,6;AS_QD=17.65,18.17,18.36;DP=100;ExcessHet=0.0000;FS=43.880;MQ=57.94;MQRankSum=2.499;QD=22.17;SOR=2.538;VarDP=47 GT:AD:DP:GQ:PL:SB 2:4,9,10,0:23:99:327,420,0,610:0,4,17,2 1/3:4,14,0,6:24:99:715,168,598,743,461,995,458,0,560,500:0,4,14,6 +chrX 1005719 . T C 3439 . AC=3;AF=1.00;AN=3;AS_AltDP=109;AS_QD=31.83;DP=111;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.83;SOR=1.483;VarDP=109 GT:AD:DP:GQ:PL:SB 1:0,66:66:99:2127,0:0,0,46,20 1/1:0,43:43:99:1342,127,0:0,0,25,18 +chrX 1006053 . T TGC 482.97 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=11.60;BaseQRankSum=1.076;DP=118;ExcessHet=0.0000;FS=8.834;MQ=60.00;MQRankSum=0;QD=11.60;ReadPosRankSum=2.231;SOR=1.518;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,99 0/1:26,19:45:99:.:522,0,933:11,15,13,6 +chrX 1006057 . C T,CGTGT 834 . AC=1,0;AF=0.333,0.00;AN=3;AS_AltDP=19,0;AS_QD=23.35,12.94;BaseQRankSum=1.157;DP=117;ExcessHet=0.0000;FS=12.992;MQ=60.00;MQRankSum=0;QD=23.35;ReadPosRankSum=1.794;SOR=1.456;VarDP=37 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,99,99 0/1:18,19,0:37:99:.:864,0,918,631,741,1392:6,12,13,6 +chrX 1006320 . T C 897 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=14.26;BaseQRankSum=1.192;DP=130;ExcessHet=0.0000;FS=8.565;MQ=60.00;MQRankSum=0;QD=14.26;ReadPosRankSum=-0.013;SOR=1.103;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,99 0/1:31,34:65:99:.:927,0,762:13,18,21,13 +chrX 1006332 . C A 856 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=12.66;BaseQRankSum=0.435;DP=134;ExcessHet=0.0000;FS=6.366;MQ=60.00;MQRankSum=0;QD=12.66;ReadPosRankSum=0.3;SOR=0.687;VarDP=70 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,99 0/1:36,34:70:99:.:886,0,935:22,14,15,19 +chrX 1006461 . T A 919 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=14.38;BaseQRankSum=-0.615;DP=131;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.38;ReadPosRankSum=1.26;SOR=0.761;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,99 0/1:31,35:66:99:.:949,0,807:19,12,22,13 +chrX 1006608 . T G 1739 . AC=2;AF=0.667;AN=3;AS_AltDP=70;AS_QD=13.71;BaseQRankSum=-0.388;DP=131;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.71;ReadPosRankSum=0.966;SOR=0.676;VarDP=129 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:27,34:61:99:.:.:365,0:.:13,14,13,21 0|1:32,36:68:99:0|1:1006608_T_G:1404,0,1162:1006608:12,20,17,19 +chrX 1006624 . T C 1873 . AC=2;AF=0.667;AN=3;AS_AltDP=74;AS_QD=14.31;BaseQRankSum=0.203;DP=135;ExcessHet=0.0000;FS=4.228;MQ=60.00;MQRankSum=0;QD=14.31;ReadPosRankSum=1.208;SOR=0.407;VarDP=133 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:27,38:65:99:.:.:499,0:.:11,16,16,22 0|1:32,36:68:99:0|1:1006608_T_G:1404,0,1163:1006608:11,21,18,18 +chrX 1006956 . TTTTTTATTATTATTA T 313.97 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=6.19;BaseQRankSum=-1.07;DP=111;ExcessHet=0.0000;FS=0.000;MQ=59.73;MQRankSum=1.618;QD=6.19;ReadPosRankSum=-0.264;SOR=0.646;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 1:25,32:57:99:.:353,0:8,5,19,13 0/0:.:48:0:48:0,0,694 +chrX 1006958 . T *,TA 1159.97 . AC=1,2;AF=0.333,0.667;AN=3;AS_AltDP=0,34;AS_QD=31.98,27.51;DP=114;ExcessHet=0.0000;FS=2.629;MQ=59.10;QD=35.26;SOR=0.451;VarDP=34 GT:AD:DP:GQ:PL:SB 1:25,32,0:57:99:353,0,1152:8,5,19,13 2/2:0,0,34:34:99:1199,1200,1200,101,102,0:0,0,13,21 +chrX 1006959 . T *,TTA,TTATTA,TTTATTA,TTTATTATTA 1435.97 . AC=1,1,1,0,0;AF=0.333,0.333,0.333,0.00,0.00;AN=3;AS_AltDP=0,10,19,0,0;AS_QD=28.08,23.23,29.03,30.67,26.61;DP=114;ExcessHet=0.0000;FS=2.655;MQ=59.10;QD=50.86;SOR=0.503;VarDP=29 GT:AD:DP:GQ:PL:SB 1:25,32,0,0,0,0:57:99:353,0,1152,1152,1152,1152:8,5,19,13 2/3:0,0,10,19,0,0:29:99:1475,1411,1557,789,803,704,410,443,0,316,1248,1451,705,416,1584,1400,1581,782,442,1605,1784:0,0,10,19 +chrX 1006980 . A T 413 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=8.20;BaseQRankSum=-1.684;DP=102;ExcessHet=0.0000;FS=3.899;MQ=59.70;MQRankSum=1.244;QD=8.20;ReadPosRankSum=0.009;SOR=1.014;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 1:22,32:54:99:.:443,0:10,12,19,13 0/0:.:46:93:46:0,93,1395 +chrX 1007009 . T C 1192 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=11.42;BaseQRankSum=-1.458;DP=111;ExcessHet=0.0000;FS=2.549;MQ=59.52;MQRankSum=1.735;QD=11.42;ReadPosRankSum=0.312;SOR=0.980;VarDP=107 GT:AD:DP:GQ:PL:SB 1:25,36:61:99:521,0:16,9,23,13 0/1:19,27:46:99:701,0,523:7,12,14,13 +chrX 1007018 . A G 3996 . AC=3;AF=1.00;AN=3;AS_AltDP=106;AS_QD=28.55;DP=112;ExcessHet=0.0000;FS=0.000;MQ=59.83;QD=37.98;SOR=0.853;VarDP=106 GT:AD:DP:GQ:PL:SB 1:0,60:60:99:2269,0:0,0,37,23 1/1:0,46:46:99:1757,137,0:0,0,20,26 +chrX 1007081 . A G 877 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=8.25;BaseQRankSum=-2.137;DP=116;ExcessHet=0.0000;FS=1.540;MQ=59.96;MQRankSum=1.218;QD=8.25;ReadPosRankSum=1.522;SOR=0.833;VarDP=110 GT:AD:DP:GQ:PL:SB 1:27,38:65:99:323,0:14,13,18,20 0/1:22,23:45:99:584,0,618:11,11,10,13 +chrX 1007312 . A G 591 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=12.18;BaseQRankSum=-1.419;DP=118;ExcessHet=0.0000;FS=1.069;MQ=60.00;MQRankSum=0;QD=12.18;ReadPosRankSum=-1.499;SOR=0.648;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:61:63:0,61 0/1:26,25:51:99:.:621,0,707:12,14,13,12 +chrX 1007424 . C T 4033 . AC=3;AF=1.00;AN=3;AS_AltDP=127;AS_QD=31.74;BaseQRankSum=2.267;DP=134;ExcessHet=0.0000;FS=0.000;MQ=59.96;MQRankSum=0;QD=31.74;ReadPosRankSum=1.055;SOR=0.415;VarDP=128 GT:AD:DP:GQ:PL:SB 1:0,59:59:99:1895,0:0,0,35,24 1/1:1,68:69:99:2168,197,0:1,0,40,28 +chrX 1007489 . G T 1039 . AC=2;AF=0.667;AN=3;AS_AltDP=65;AS_QD=8.76;BaseQRankSum=0.766;DP=131;ExcessHet=0.0000;FS=0.678;MQ=59.95;MQRankSum=1.187;QD=8.76;ReadPosRankSum=0.465;SOR=0.600;VarDP=122 GT:AD:DP:GQ:PL:SB 1:27,36:63:99:288,0:13,14,16,20 0/1:30,29:59:99:781,0,812:20,10,20,9 +chrX 1007505 . G C 808 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=12.14;BaseQRankSum=2.696;DP=134;ExcessHet=0.0000;FS=3.470;MQ=59.92;MQRankSum=0;QD=12.14;ReadPosRankSum=0.193;SOR=1.179;VarDP=69 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,1706 0/1:37,32:69:99:.:838,0,845:23,14,23,9 +chrX 1007655 . C T 5011 . AC=3;AF=1.00;AN=3;AS_AltDP=132;AS_QD=28.53;DP=141;ExcessHet=0.0000;FS=0.000;MQ=59.92;QD=38.19;SOR=1.205;VarDP=132 GT:AD:DP:GQ:PL:SB 1:0,60:60:99:2616,0:0,0,25,35 1/1:0,72:72:99:2425,216,0:0,0,27,45 +chrX 1007668 . G A 4842 . AC=3;AF=1.00;AN=3;AS_AltDP=128;AS_QD=29.52;DP=131;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=38.06;SOR=1.092;VarDP=128 GT:AD:DP:GQ:PL:SB 1:0,58:58:99:2527,0:0,0,26,32 1/1:0,70:70:99:2345,210,0:0,0,27,43 +chrX 1007715 . G A 996 . AC=2;AF=0.667;AN=3;AS_AltDP=71;AS_QD=7.66;BaseQRankSum=0.09;DP=137;ExcessHet=0.0000;FS=0.662;MQ=60.00;MQRankSum=0;QD=7.66;ReadPosRankSum=2.387;SOR=0.626;VarDP=134 GT:AD:DP:GQ:PL:SB 1:32,34:66:91:91,0:14,18,11,23 0/1:31,37:68:99:935,0,800:8,23,15,22 +chrX 1007787 . T C 1334 . AC=2;AF=0.667;AN=3;AS_AltDP=69;AS_QD=10.91;BaseQRankSum=2.222;DP=128;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=10.91;ReadPosRankSum=-0.809;SOR=0.658;VarDP=125 GT:AD:DP:GQ:PL:SB 1:25,40:65:99:562,0:13,12,19,21 0/1:31,29:60:99:802,0,856:10,21,10,19 +chrX 1007801 . A G 4627 . AC=3;AF=1.00;AN=3;AS_AltDP=123;AS_QD=32.91;DP=126;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=37.86;SOR=0.848;VarDP=123 GT:AD:DP:GQ:PL:SB 1:0,65:65:99:2477,0:0,0,36,29 1/1:0,58:58:99:2180,174,0:0,0,21,37 +chrX 1007874 . CT C 1988.97 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=31.45;DP=104;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.15;SOR=1.251;VarDP=47 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:55:99:55:.:.:0,198 1|1:0,47:47:99:.:0|1:1007874_CT_C:2028,141,0:1007874:0,0,29,18 +chrX 1007876 . T C 135 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=3.44;BaseQRankSum=0.336;DP=100;ExcessHet=0.0000;FS=2.497;MQ=60.00;MQRankSum=0;QD=3.44;ReadPosRankSum=0.952;SOR=0.914;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 1:22,26:48:99:.:165,0:10,12,15,11 0/0:.:47:99:47:0,120,1800 +chrX 1007877 . CTT C 125.97 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=3.44;BaseQRankSum=-0.762;DP=101;ExcessHet=0.0000;FS=2.497;MQ=59.68;MQRankSum=0;QD=3.44;ReadPosRankSum=1.014;SOR=0.914;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 1:22,26:48:99:.:165,0:10,12,15,11 0/0:.:47:99:47:0,120,1800 +chrX 1007878 . T *,C 2123 . AC=1,2;AF=0.333,0.667;AN=3;AS_AltDP=0,50;AS_QD=31.26,27.76;DP=104;ExcessHet=0.0000;FS=4.811;MQ=60.00;QD=43.06;SOR=1.023;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:22,26,0:48:99:.:.:165,0,1139:.:10,12,15,11 2|2:0,0,50:50:99:0|1:1007874_CT_C:2153,2153,2153,150,150,0:1007874:0,0,30,20 +chrX 1007893 . T G 526 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=10.49;BaseQRankSum=-1.289;DP=112;ExcessHet=0.0000;FS=3.809;MQ=60.00;MQRankSum=0;QD=10.49;ReadPosRankSum=0.503;SOR=0.496;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:58:4:58:0,4 0/1:30,23:53:99:.:556,0,1097:18,12,11,12 +chrX 1007916 . C A 643 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=13.46;BaseQRankSum=-1.034;DP=96;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.46;ReadPosRankSum=0.33;SOR=0.682;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:44:68:44:0,68 0/1:24,26:50:99:.:673,0,814:13,11,14,12 +chrX 1007946 . G A 64 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=2.54;BaseQRankSum=-0.419;DP=90;ExcessHet=0.0000;FS=0.000;MQ=59.43;MQRankSum=-0.868;QD=2.54;ReadPosRankSum=0.518;SOR=0.536;VarDP=37 GT:AD:DP:GQ:MIN_DP:PL:SB 1:17,20:37:94:.:94,0:6,11,8,12 0/0:.:51:99:51:0,108,1538 +chrX 1008002 . C G 635 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=12.55;BaseQRankSum=-0.498;DP=104;ExcessHet=0.0000;FS=1.047;MQ=60.00;MQRankSum=0;QD=12.55;ReadPosRankSum=1.086;SOR=0.507;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:48:99:48:0,110 0/1:27,26:53:99:.:665,0,690:15,12,13,13 +chrX 1008067 . G A 1082 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=10.80;BaseQRankSum=1.177;DP=105;ExcessHet=0.0000;FS=1.579;MQ=59.77;MQRankSum=1.001;QD=10.80;ReadPosRankSum=0.479;SOR=0.884;VarDP=103 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:24,31:55:99:.:.:254,0:.:13,11,15,16 0|1:25,23:48:99:0|1:1008067_G_A:858,0,929:1008067:12,13,15,8 +chrX 1008075 . C T 970 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=9.62;BaseQRankSum=-0.418;DP=108;ExcessHet=0.0000;FS=1.583;MQ=59.77;MQRankSum=0.963;QD=9.62;ReadPosRankSum=1.086;SOR=0.941;VarDP=104 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:25,29:54:99:.:.:160,0:.:13,12,15,14 0|1:27,23:50:99:0|1:1008067_G_A:840,0,991:1008067:13,14,14,9 +chrX 1008120 . A G 3314 . AC=3;AF=1.00;AN=3;AS_AltDP=105;AS_QD=31.85;DP=109;ExcessHet=0.0000;FS=0.000;MQ=59.82;QD=31.85;SOR=0.833;VarDP=105 GT:AD:DP:GQ:PL:SB 1:0,52:52:99:1652,0:0,0,29,23 1/1:0,53:53:99:1692,159,0:0,0,27,26 +chrX 1008157 . G A 4260 . AC=3;AF=1.00;AN=3;AS_AltDP=111;AS_QD=33.85;DP=114;ExcessHet=0.0000;FS=0.000;MQ=59.83;QD=38.65;SOR=0.786;VarDP=111 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,55:55:99:.:.:1832,0:.:0,0,31,24 1|1:0,56:56:99:0|1:1008157_G_A:2458,169,0:1008157:0,0,27,29 +chrX 1008169 . G T 4100 . AC=3;AF=1.00;AN=3;AS_AltDP=109;AS_QD=25.42;BaseQRankSum=3.526;DP=113;ExcessHet=0.0000;FS=0.000;MQ=59.92;MQRankSum=-0.212;QD=37.21;ReadPosRankSum=1.541;SOR=0.869;VarDP=111 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:2,51:53:99:.:.:1648,0:.:1,1,29,22 1|1:0,58:58:99:0|1:1008157_G_A:2482,174,0:1008157:0,0,30,28 +chrX 1008653 . C T 1091 . AC=2;AF=0.667;AN=3;AS_AltDP=64;AS_QD=9.50;BaseQRankSum=1.747;DP=120;ExcessHet=0.0000;FS=3.375;MQ=60.00;MQRankSum=0;QD=9.50;ReadPosRankSum=-0.808;SOR=1.044;VarDP=118 GT:AD:DP:GQ:PL:SB 1:26,32:58:99:209,0:14,12,18,14 0/1:28,32:60:99:912,0,717:13,15,19,13 +chrX 1009311 . C T 4497 . AC=3;AF=1.00;AN=3;AS_AltDP=137;AS_QD=33.04;DP=138;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.04;SOR=0.708;VarDP=137 GT:AD:DP:GQ:PL:SB 1:0,74:74:99:2457,0:0,0,35,39 1/1:0,63:63:99:2070,189,0:0,0,34,29 +chrX 1010108 . A G 3570 . AC=3;AF=1.00;AN=3;AS_AltDP=113;AS_QD=31.86;DP=116;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.86;SOR=1.179;VarDP=113 GT:AD:DP:GQ:PL:SB 1:0,52:52:99:1691,0:0,0,19,33 1/1:0,61:61:99:1909,182,0:0,0,26,35 +chrX 1010342 . G T 958 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=14.53;BaseQRankSum=1.77;DP=108;ExcessHet=0.0000;FS=3.363;MQ=59.82;MQRankSum=-0.913;QD=14.53;ReadPosRankSum=-0.068;SOR=1.201;VarDP=68 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:46:41:34:0,41 0/1:32,36:68:99:.:988,0,768:15,17,13,23 +chrX 1010432 . G A 351 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=8.11;BaseQRankSum=1.011;DP=82;ExcessHet=0.0000;FS=2.982;MQ=60.00;MQRankSum=0;QD=8.11;ReadPosRankSum=-1.552;SOR=1.228;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:46:41:34:0,41 0/1:32,15:47:99:.:381,0,921:10,22,3,12 +chrX 1010495 . G A 108 . AC=1;AF=0.333;AN=3;AS_AltDP=7;AS_QD=4.76;BaseQRankSum=0.227;DP=66;ExcessHet=0.0000;FS=6.680;MQ=59.48;MQRankSum=0.645;QD=4.76;ReadPosRankSum=-0.841;SOR=1.506;VarDP=29 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:46:41:34:0,41 0/1:22,7:29:99:.:138,0,558:9,13,5,2 +chrX 1010652 . A T 320 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=8.33;BaseQRankSum=-0.192;DP=83;ExcessHet=0.0000;FS=7.134;MQ=60.00;MQRankSum=0;QD=8.33;ReadPosRankSum=-2.298;SOR=0.169;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:46:41:34:0,41 0/1:27,15:42:99:.:350,0,763:7,20,7,8 +chrX 1010887 . C G 713 . AC=2;AF=0.667;AN=3;AS_AltDP=45;AS_QD=9.41;BaseQRankSum=1.606;DP=81;ExcessHet=0.0000;FS=22.511;MQ=60.00;MQRankSum=0;QD=9.41;ReadPosRankSum=0.05;SOR=1.785;VarDP=79 GT:AD:DP:GQ:PL:SB 1:21,21:42:50:50,0:9,12,12,9 0/1:13,24:37:99:693,0,299:4,9,20,4 +chrX 1011067 . A G 802 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=13.87;BaseQRankSum=-0.155;DP=115;ExcessHet=0.0000;FS=0.990;MQ=60.00;MQRankSum=0;QD=13.87;ReadPosRankSum=0.63;SOR=0.709;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:54:21:52:0,21 0/1:28,32:60:99:.:832,0,734:15,13,15,17 +chrX 1011341 . C T 1641 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=14.66;BaseQRankSum=0.067;DP=123;ExcessHet=0.0000;FS=7.311;MQ=58.30;MQRankSum=1.393;QD=14.66;ReadPosRankSum=-0.584;SOR=0.358;VarDP=114 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:20,32:52:99:.:.:525,0:.:13,7,16,16 0|1:31,31:62:99:0|1:1011341_C_T:1146,0,1162:1011341:19,12,15,16 +chrX 1011345 . C T 1579 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=14.37;BaseQRankSum=0.435;DP=118;ExcessHet=0.0000;FS=7.374;MQ=58.29;MQRankSum=1.341;QD=14.37;ReadPosRankSum=0.118;SOR=0.360;VarDP=112 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:20,31:51:99:.:.:494,0:.:13,7,15,16 0|1:31,30:61:99:0|1:1011341_C_T:1115,0,1165:1011341:19,12,15,15 +chrX 1011486 . G GA 314.97 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=8.23;BaseQRankSum=0.077;DP=95;ExcessHet=0.0000;FS=6.587;MQ=58.85;MQRankSum=-0.22;QD=8.23;ReadPosRankSum=0.099;SOR=1.739;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:50:26:38:0,26 0/1:25,18:43:99:.:354,0,567:13,12,13,5 +chrX 1011523 . A G 1420 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=30.85;DP=99;ExcessHet=0.0000;FS=0.000;MQ=58.83;QD=30.85;SOR=0.919;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:50:26:38:0,26 1/1:0,47:47:99:.:1450,140,0:0,0,26,21 +chrX 1011586 . G A 653 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=11.98;BaseQRankSum=1.642;DP=97;ExcessHet=0.0000;FS=5.389;MQ=59.51;MQRankSum=-0.075;QD=11.98;ReadPosRankSum=-1.178;SOR=1.126;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:50:26:38:0,26 0/1:31,26:57:99:.:683,0,771:17,14,10,16 +chrX 1011618 . T C 724 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=5.94;BaseQRankSum=0.162;DP=131;ExcessHet=0.0000;FS=1.419;MQ=59.57;MQRankSum=-0.184;QD=5.94;ReadPosRankSum=0.367;SOR=0.872;VarDP=127 GT:AD:DP:GQ:PL:SB 1:33,39:72:99:239,0:13,20,16,23 0/1:32,23:55:99:515,0,838:17,15,10,13 +chrX 1011658 . GA G,AA 766 . AC=2,0;AF=0.667,0.00;AN=3;AS_AltDP=59,1;AS_QD=7.11,0.00;BaseQRankSum=-2.224;DP=135;ExcessHet=0.0000;FS=4.735;MQ=59.53;MQRankSum=-1.067;QD=7.04;ReadPosRankSum=-0.031;SOR=1.193;VarDP=113 GT:AD:DP:GQ:PL:SB 1:26,37,1:64:99:282,0,2006:9,17,13,25 0/1:27,22,0:49:99:514,0,638,595,704,1299:15,12,8,14 +chrX 1011734 . A G 910 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=13.06;BaseQRankSum=1.536;DP=145;ExcessHet=0.0000;FS=0.895;MQ=60.00;MQRankSum=0;QD=13.06;ReadPosRankSum=2.029;SOR=0.615;VarDP=72 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:71:65:71:0,65 0/1:37,35:72:99:.:940,0,935:17,20,18,17 +chrX 1012152 . G A 1065 . AC=2;AF=0.667;AN=3;AS_AltDP=72;AS_QD=7.93;BaseQRankSum=3.103;DP=144;ExcessHet=0.0000;FS=1.353;MQ=60.00;MQRankSum=0;QD=7.93;ReadPosRankSum=-0.33;SOR=0.859;VarDP=138 GT:AD:DP:GQ:PL:SB 1:35,39:74:99:149,0:18,17,23,16 0/1:31,33:64:99:946,0,741:17,14,18,15 +chrX 1012190 . A G,T 1178 . AC=1,0;AF=0.333,0.00;AN=3;AS_AltDP=30,2;AS_QD=18.30,10.13;BaseQRankSum=-1.155;DP=133;ExcessHet=0.0000;FS=3.318;MQ=60.00;MQRankSum=0;QD=17.76;ReadPosRankSum=0.998;SOR=0.585;VarDP=68 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:24:64:0,24,24 0/1:36,30,2:68:99:.:1208,0,1371,823,1431,2204:15,21,17,15 +chrX 1012195 . AAATG A 1237.97 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=18.51;BaseQRankSum=0.854;DP=135;ExcessHet=0.0000;FS=4.697;MQ=60.00;MQRankSum=0;QD=18.51;ReadPosRankSum=0.755;SOR=0.762;VarDP=69 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:24:64:0,24 0/1:35,34:69:99:.:1277,0,1347:15,20,19,15 +chrX 1012548 . A AGTATTAATATTAAATATTACTGGATATTTAAG,ATTATTAATATTAAATATTACTGGATATTTAATTATTAATATTAAATATTACTGGATATTTAATTATTAATATTAAATATTACTGGATATTTAAGTATTAATATTAAATATTACTGGATATTTAAG 623.97 . AC=1,0;AF=0.333,0.00;AN=3;AS_AltDP=0,0;AS_QD=33.63,30.55;DP=163;ExcessHet=0.0000;FS=0.000;MQ=59.42;QD=21.39;SOR=0.527;VarDP=31 GT:AD:DP:GQ:MIN_DP:PL:SB 1:31,0,0:31:7:.:663,0,7:14,17,0,0 0/0:.:86:99:86:0,108,1620,108,1620,1620 +chrX 1012573 . G A 55 . AC=1;AF=1.00;AN=1;AS_AltDP=35;AS_QD=1.27;BaseQRankSum=0.076;DP=141;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=1.27;ReadPosRankSum=0.395;SOR=0.612;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 1:32,35:67:85:.:85,0:13,19,15,20 ./.:.:73:0:73:0,0,0 +chrX 1012629 . A G 959 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=14.76;BaseQRankSum=-1.135;DP=137;ExcessHet=0.0000;FS=16.747;MQ=59.97;MQRankSum=1.141;QD=14.76;ReadPosRankSum=0.814;SOR=0.083;VarDP=67 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:67:99:67:.:.:0,1678 0|1:30,37:67:99:.:0|1:1012629_A_G:989,0,1053:1012629:24,6,19,18 +chrX 1012647 . AT A 716.97 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=5.82;BaseQRankSum=1.073;DP=136;ExcessHet=0.0000;FS=6.730;MQ=59.99;MQRankSum=0;QD=5.82;ReadPosRankSum=1.199;SOR=1.255;VarDP=130 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:30,30:60:3:.:.:3,0:.:16,14,15,15 0|1:43,27:70:99:1|0:1012629_A_G:753,0,1619:1012629:23,20,22,5 +chrX 1012842 . G A 870 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=13.43;BaseQRankSum=0.105;DP=137;ExcessHet=0.0000;FS=0.988;MQ=60.00;MQRankSum=0;QD=13.43;ReadPosRankSum=0.317;SOR=0.836;VarDP=67 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:69:79:69:.:.:0,79 0|1:42,25:67:99:.:0|1:1012842_G_A:900,0,1654:1012842:15,27,8,17 +chrX 1012848 . T C 872 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=13.46;BaseQRankSum=-1.613;DP=139;ExcessHet=0.0000;FS=0.988;MQ=60.00;MQRankSum=0;QD=13.46;ReadPosRankSum=0.817;SOR=0.836;VarDP=67 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:69:79:69:.:.:0,79 0|1:42,25:67:99:.:0|1:1012842_G_A:902,0,1654:1012842:15,27,8,17 +chrX 1012877 . C A 1021 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=9.30;BaseQRankSum=-0.9;DP=117;ExcessHet=0.0000;FS=3.421;MQ=60.00;MQRankSum=0;QD=9.30;ReadPosRankSum=-0.271;SOR=0.446;VarDP=113 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:24,27:51:99:.:.:145,0:.:12,12,16,11 0|1:37,25:62:99:0|1:1012877_C_A:906,0,1417:1012877:14,23,10,15 +chrX 1012889 . A T 1049 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=9.30;BaseQRankSum=-0.502;DP=118;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=9.30;ReadPosRankSum=0.017;SOR=0.631;VarDP=116 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:27,28:55:75:.:.:75,0:.:16,11,17,11 0|1:33,28:61:99:0|1:1012877_C_A:1004,0,1281:1012877:13,20,11,17 +chrX 1012978 . C CT 1874.97 . AC=2;AF=0.667;AN=3;AS_AltDP=69;AS_QD=17.24;BaseQRankSum=1.307;DP=113;ExcessHet=0.0000;FS=1.669;MQ=60.00;MQRankSum=0;QD=17.24;ReadPosRankSum=0.299;SOR=0.502;VarDP=111 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:22,36:58:99:.:.:625,0:.:17,5,21,15 0|1:20,33:53:99:0|1:1012978_C_CT:1289,0,740:1012978:12,8,23,10 +chrX 1012980 . T C 1884 . AC=2;AF=0.667;AN=3;AS_AltDP=69;AS_QD=17.24;BaseQRankSum=0.447;DP=116;ExcessHet=0.0000;FS=1.669;MQ=60.00;MQRankSum=0;QD=17.24;ReadPosRankSum=0.028;SOR=0.502;VarDP=111 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:22,36:58:99:.:.:625,0:.:17,5,21,15 0|1:20,33:53:99:0|1:1012978_C_CT:1289,0,740:1012978:12,8,23,10 +chrX 1013043 . G T 1108 . AC=2;AF=0.667;AN=3;AS_AltDP=72;AS_QD=9.03;BaseQRankSum=0.52;DP=129;ExcessHet=0.0000;FS=5.470;MQ=60.00;MQRankSum=0;QD=9.03;ReadPosRankSum=0.175;SOR=0.590;VarDP=126 GT:AD:DP:GQ:PL:SB 1:30,41:71:99:278,0:16,14,17,24 0/1:24,31:55:99:860,0,604:15,9,17,14 +chrX 1013130 . C T 1021 . AC=2;AF=0.667;AN=3;AS_AltDP=74;AS_QD=7.40;BaseQRankSum=2.439;DP=146;ExcessHet=0.0000;FS=0.631;MQ=60.00;MQRankSum=0;QD=7.40;ReadPosRankSum=1.37;SOR=0.778;VarDP=142 GT:AD:DP:GQ:PL:SB 1:34,36:70:24:24,0:14,20,15,21 0/1:34,38:72:99:1027,0,712:14,20,14,24 +chrX 1013287 . C T 52 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=1.05;BaseQRankSum=2.519;DP=145;ExcessHet=0.0000;FS=11.225;MQ=59.46;MQRankSum=0.942;QD=1.05;ReadPosRankSum=-0.065;SOR=1.206;VarDP=78 GT:AD:DP:GQ:MIN_DP:PL:SB 1:40,38:78:82:.:82,0:17,23,24,14 0/0:.:67:72:67:0,72,1427 +chrX 1013432 . G A 246 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=5.02;BaseQRankSum=-0.109;DP=123;ExcessHet=0.0000;FS=14.936;MQ=58.79;MQRankSum=-0.408;QD=5.02;ReadPosRankSum=0.516;SOR=1.670;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 1:25,30:55:99:.:276,0:15,10,9,21 0/0:.:67:72:67:0,72,1427 +chrX 1013442 . A G 375 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=7.36;BaseQRankSum=1.387;DP=123;ExcessHet=0.0000;FS=15.864;MQ=59.09;MQRankSum=-1.474;QD=7.36;ReadPosRankSum=-0.018;SOR=1.825;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 1:23,32:55:99:.:405,0:14,9,9,23 0/0:.:67:72:67:0,72,1427 +chrX 1013452 . G A 375 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=7.36;BaseQRankSum=-1.046;DP=123;ExcessHet=0.0000;FS=12.916;MQ=59.09;MQRankSum=-1.474;QD=7.36;ReadPosRankSum=0.572;SOR=1.853;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 1:23,32:55:99:.:405,0:13,10,9,23 0/0:.:67:72:67:0,72,1427 +chrX 1013464 . C T 510 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=10.00;BaseQRankSum=0.978;DP=122;ExcessHet=0.0000;FS=24.110;MQ=59.07;MQRankSum=-1.386;QD=10.00;ReadPosRankSum=0.793;SOR=2.468;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 1:21,33:54:99:.:540,0:13,8,7,26 0/0:.:67:72:67:0,72,1427 +chrX 1013465 . T C 510 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=10.00;BaseQRankSum=-1.32;DP=122;ExcessHet=0.0000;FS=24.110;MQ=59.07;MQRankSum=-1.386;QD=10.00;ReadPosRankSum=0.821;SOR=2.468;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 1:21,33:54:99:.:540,0:13,8,7,26 0/0:.:67:72:67:0,72,1427 +chrX 1013495 . T C 330 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=6.92;BaseQRankSum=-1.394;DP=119;ExcessHet=0.0000;FS=19.436;MQ=59.69;MQRankSum=-1.195;QD=6.92;ReadPosRankSum=0.305;SOR=2.252;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 1:22,30:52:99:.:360,0:13,9,7,23 0/0:.:67:72:67:0,72,1427 +chrX 1013511 . T C 514 . AC=2;AF=0.667;AN=3;AS_AltDP=45;AS_QD=5.61;BaseQRankSum=0.573;DP=100;ExcessHet=0.0000;FS=6.476;MQ=59.78;MQRankSum=0;QD=5.61;ReadPosRankSum=1.059;SOR=1.304;VarDP=97 GT:AD:DP:GQ:PL:SB 1:25,28:53:99:115,0:13,12,8,20 0/1:27,17:44:99:429,0,731:12,15,8,9 +chrX 1013626 . C A 710 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=12.98;BaseQRankSum=2.523;DP=120;ExcessHet=0.0000;FS=12.127;MQ=58.54;MQRankSum=-0.537;QD=12.98;ReadPosRankSum=1.447;SOR=1.713;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:69:64:59:0,64 0/1:30,27:57:99:.:740,0,737:13,17,19,8 +chrX 1013732 . G A 874 . AC=2;AF=0.667;AN=3;AS_AltDP=67;AS_QD=7.60;BaseQRankSum=-1.794;DP=122;ExcessHet=0.0000;FS=7.350;MQ=59.23;MQRankSum=0.774;QD=7.60;ReadPosRankSum=0.422;SOR=1.379;VarDP=119 GT:AD:DP:GQ:PL:SB 1:29,37:66:99:176,0:17,12,25,12 0/1:23,30:53:99:728,0,642:11,12,20,10 +chrX 1013919 . C CA 420.97 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=7.80;BaseQRankSum=2.565;DP=134;ExcessHet=0.0000;FS=3.747;MQ=60.00;MQRankSum=0;QD=7.80;ReadPosRankSum=-0.612;SOR=1.220;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:27:60:0,27 0/1:37,22:59:99:.:460,0,926:16,21,7,15 +chrX 1014037 . T TA 390.97 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=10.24;BaseQRankSum=0.327;DP=116;ExcessHet=0.0000;FS=4.581;MQ=59.70;MQRankSum=-0.818;QD=10.24;ReadPosRankSum=-0.928;SOR=1.519;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:27:60:0,27 0/1:18,24:42:99:.:430,0,316:9,9,16,8 +chrX 1014207 . C T 561 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=13.43;BaseQRankSum=-0.483;DP=105;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.43;ReadPosRankSum=-0.717;SOR=0.836;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:27:60:0,27 0/1:21,23:44:99:.:591,0,543:8,13,8,15 +chrX 1014401 . A C 518 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=11.18;BaseQRankSum=1.305;DP=110;ExcessHet=0.0000;FS=2.490;MQ=60.00;MQRankSum=0;QD=11.18;ReadPosRankSum=1.182;SOR=1.117;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:27:60:0,27 0/1:28,21:49:99:.:548,0,740:16,12,14,7 +chrX 1014504 . C G 479 . AC=2;AF=0.667;AN=3;AS_AltDP=49;AS_QD=4.59;BaseQRankSum=1.636;DP=113;ExcessHet=0.0000;FS=0.705;MQ=59.79;MQRankSum=0.772;QD=4.59;ReadPosRankSum=1.019;SOR=0.611;VarDP=111 GT:AD:DP:GQ:PL:SB 1:30,32:62:99:127,0:17,13,14,18 0/1:32,17:49:99:382,0,867:16,16,11,6 +chrX 1014689 . T C 779 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=14.45;BaseQRankSum=-2.61;DP=109;ExcessHet=0.0000;FS=7.278;MQ=59.60;MQRankSum=-1.256;QD=14.45;ReadPosRankSum=-0.239;SOR=0.580;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:51:99:51:0,178 0/1:25,31:56:99:.:809,0,690:9,16,17,14 +chrX 1014740 . CAA C 421.97 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=12.81;BaseQRankSum=-0.07;DP=101;ExcessHet=0.0000;FS=1.341;MQ=59.09;MQRankSum=1.323;QD=12.81;ReadPosRankSum=-1.018;SOR=0.412;VarDP=36 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:51:99:51:0,178 0/1:20,16:36:99:.:461,0,569:7,13,7,9 +chrX 1014800 . C A 786 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=18.55;BaseQRankSum=-0.035;DP=95;ExcessHet=0.0000;FS=2.716;MQ=60.00;MQRankSum=0;QD=18.55;ReadPosRankSum=2.589;SOR=0.487;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:51:99:51:0,178 0/1:15,29:44:99:.:816,0,358:9,6,14,15 +chrX 1014853 . C T 825 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=15.83;BaseQRankSum=0.475;DP=114;ExcessHet=0.0000;FS=3.869;MQ=60.00;MQRankSum=0;QD=15.83;ReadPosRankSum=-0.352;SOR=0.337;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:55:4:55:0,4 0/1:22,32:54:99:.:855,0,533:15,7,18,14 +chrX 1015097 . G A 855 . AC=2;AF=0.667;AN=3;AS_AltDP=48;AS_QD=10.06;BaseQRankSum=1.832;DP=94;ExcessHet=0.0000;FS=4.146;MQ=59.83;MQRankSum=1.176;QD=10.06;ReadPosRankSum=-0.229;SOR=0.354;VarDP=88 GT:AD:DP:GQ:PL:SB 1:19,21:40:99:171,0:12,7,11,10 0/1:21,27:48:99:714,0,536:14,7,15,12 +chrX 1015169 . T C 593 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=11.98;BaseQRankSum=0.468;DP=90;ExcessHet=0.0000;FS=5.860;MQ=60.00;MQRankSum=0;QD=11.98;ReadPosRankSum=-1.194;SOR=0.223;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:37:99:37:0,109 0/1:28,24:52:99:.:623,0,728:19,9,12,12 +chrX 1015202 . A G 511 . AC=2;AF=0.667;AN=3;AS_AltDP=39;AS_QD=6.22;BaseQRankSum=1.204;DP=91;ExcessHet=0.0000;FS=1.783;MQ=59.88;MQRankSum=1.584;QD=6.22;ReadPosRankSum=-0.564;SOR=0.467;VarDP=87 GT:AD:DP:GQ:PL:SB 1:18,21:39:99:129,0:12,6,12,9 0/1:30,18:48:99:412,0,754:17,13,9,9 +chrX 1015236 . T C 380 . AC=2;AF=0.667;AN=3;AS_AltDP=34;AS_QD=5.32;BaseQRankSum=0.446;DP=85;ExcessHet=0.0000;FS=5.862;MQ=59.94;MQRankSum=1.164;QD=5.32;ReadPosRankSum=0.073;SOR=0.527;VarDP=77 GT:AD:DP:GQ:PL:SB 1:17,21:38:99:111,0:11,6,11,10 0/1:26,13:39:99:299,0,727:15,11,5,8 +chrX 1015320 . G A 469 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=11.88;BaseQRankSum=2.285;DP=99;ExcessHet=0.0000;FS=1.221;MQ=60.00;MQRankSum=0;QD=11.88;ReadPosRankSum=1.513;SOR=0.460;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:55:99:55:0,99 0/1:24,18:42:99:.:499,0,648:9,15,8,10 +chrX 1015436 . C A,T 456 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=1,18;AS_QD=0.00,11.30;BaseQRankSum=-0.309;DP=110;ExcessHet=0.0000;FS=4.420;MQ=60.00;MQRankSum=0;QD=11.05;ReadPosRankSum=0.498;SOR=0.811;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:4:63:0,4,4 0/2:25,1,18:44:99:.:486,602,1861,0,828,720:15,10,8,11 +chrX 1015482 . C G 464 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=9.50;BaseQRankSum=-1.825;DP=96;ExcessHet=0.0000;FS=3.983;MQ=60.00;MQRankSum=0;QD=9.50;ReadPosRankSum=0.606;SOR=0.478;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:50:58:44:0,58 0/1:31,21:52:99:.:494,0,902:19,12,10,11 +chrX 1015725 . G A 129 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=3.31;BaseQRankSum=1.042;DP=107;ExcessHet=0.0000;FS=2.512;MQ=60.00;MQRankSum=0;QD=3.31;ReadPosRankSum=-0.083;SOR=1.220;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 1:22,26:48:99:.:159,0:11,11,16,10 0/0:.:58:91:58:0,91,1448 +chrX 1015850 . G A 4152 . AC=3;AF=1.00;AN=3;AS_AltDP=127;AS_QD=32.93;DP=132;ExcessHet=0.0000;FS=0.000;MQ=59.96;QD=32.93;SOR=0.843;VarDP=127 GT:AD:DP:GQ:PL:SB 1:0,59:59:99:1925,0:0,0,27,32 1/1:0,68:68:99:2257,204,0:0,0,32,36 +chrX 1016071 . C T 286 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=4.79;BaseQRankSum=-0.169;DP=131;ExcessHet=0.0000;FS=2.071;MQ=60.00;MQRankSum=0;QD=4.79;ReadPosRankSum=0.286;SOR=1.002;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 1:28,38:66:99:.:316,0:15,13,23,15 0/0:.:63:99:63:0,105,1800 +chrX 1016187 . C T 965 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=21.63;BaseQRankSum=-2.155;DP=97;ExcessHet=0.0000;FS=2.512;MQ=59.51;MQRankSum=0.188;QD=21.63;ReadPosRankSum=1.641;SOR=0.392;VarDP=46 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:53:39:50:.:.:0,39 0|1:20,26:46:99:.:0|1:1016187_C_T:995,0,751:1016187:12,8,13,13 +chrX 1016188 . A G 965 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=21.63;BaseQRankSum=-1.42;DP=97;ExcessHet=0.0000;FS=2.512;MQ=59.51;MQRankSum=0.188;QD=21.63;ReadPosRankSum=1.517;SOR=0.392;VarDP=46 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:53:39:50:.:.:0,39 0|1:20,26:46:99:.:0|1:1016187_C_T:995,0,751:1016187:12,8,13,13 +chrX 1016558 . C G 621 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=11.63;BaseQRankSum=1.082;DP=108;ExcessHet=0.0000;FS=7.508;MQ=59.77;MQRankSum=0.934;QD=11.63;ReadPosRankSum=0.272;SOR=0.636;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:53:39:50:0,39 0/1:31,25:56:99:.:651,0,794:20,11,11,14 +chrX 1016706 . AT A 375.97 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=10.92;BaseQRankSum=-0.307;DP=102;ExcessHet=0.0000;FS=4.815;MQ=59.40;MQRankSum=-0.947;QD=10.92;ReadPosRankSum=0.927;SOR=1.164;VarDP=38 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:53:39:50:0,39 0/1:19,19:38:99:.:415,0,394:8,11,12,7 +chrX 1016934 . G T 571 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=12.52;BaseQRankSum=1.358;DP=99;ExcessHet=0.0000;FS=5.874;MQ=59.58;MQRankSum=0;QD=12.52;ReadPosRankSum=1.17;SOR=1.261;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:53:39:50:0,39 0/1:26,22:48:99:.:601,0,667:14,12,8,14 +chrX 1017024 . A AT 699.97 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=12.96;BaseQRankSum=-0.768;DP=109;ExcessHet=0.0000;FS=1.037;MQ=60.00;MQRankSum=0;QD=12.96;ReadPosRankSum=-0.528;SOR=0.481;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:53:39:50:0,39 0/1:27,30:57:99:.:739,0,652:17,10,17,13 +chrX 1017767 . A G 617 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=10.11;BaseQRankSum=-0.141;DP=115;ExcessHet=0.0000;FS=5.031;MQ=59.94;MQRankSum=0.859;QD=10.11;ReadPosRankSum=1.389;SOR=1.165;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:53:39:50:0,39 0/1:38,26:64:99:.:647,0,1058:18,20,16,10 +chrX 1017813 . G A 639 . AC=2;AF=0.667;AN=3;AS_AltDP=45;AS_QD=6.97;BaseQRankSum=0.822;DP=107;ExcessHet=0.0000;FS=3.813;MQ=59.38;MQRankSum=0;QD=6.97;ReadPosRankSum=-0.117;SOR=1.103;VarDP=96 GT:AD:DP:GQ:PL:SB 1:20,21:41:35:35,0:9,11,4,17 0/1:31,24:55:99:634,0,848:16,15,14,10 +chrX 1017849 . A G 713 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=7.51;BaseQRankSum=2.14;DP=109;ExcessHet=0.0000;FS=8.130;MQ=59.31;MQRankSum=0;QD=7.51;ReadPosRankSum=-0.013;SOR=1.514;VarDP=99 GT:AD:DP:GQ:PL:SB 1:20,21:41:85:85,0:11,9,7,14 0/1:32,26:58:99:658,0,927:15,17,9,17 +chrX 1017903 . AAAC A 876.97 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=16.96;BaseQRankSum=-1.013;DP=106;ExcessHet=0.0000;FS=5.379;MQ=59.86;MQRankSum=-1.04;QD=16.96;ReadPosRankSum=-1.302;SOR=1.027;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:46:16:46:0,16 0/1:29,25:54:99:.:916,0,1119:16,13,10,15 +chrX 1018392 . C A 1047 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=9.88;BaseQRankSum=1.192;DP=112;ExcessHet=0.0000;FS=2.482;MQ=59.60;MQRankSum=0;QD=9.88;ReadPosRankSum=0.062;SOR=0.462;VarDP=109 GT:AD:DP:GQ:PL:SB 1:20,31:51:99:363,0:8,12,18,13 0/1:31,27:58:99:714,0,803:14,17,11,16 +chrX 1018753 . G C 694 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=12.93;BaseQRankSum=-1.275;DP=127;ExcessHet=0.0000;FS=0.000;MQ=59.86;MQRankSum=1.072;QD=12.93;ReadPosRankSum=-0.82;SOR=0.689;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:99:68:0,125 0/1:27,29:56:99:.:724,0,705:14,13,15,14 +chrX 1019304 . C T 611 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=11.65;BaseQRankSum=-1.785;DP=123;ExcessHet=0.0000;FS=1.029;MQ=60.00;MQRankSum=0;QD=11.65;ReadPosRankSum=-1.209;SOR=0.662;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:99:68:0,125 0/1:30,25:55:99:.:641,0,858:16,14,12,13 +chrX 1019431 . A G 448 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=12.26;BaseQRankSum=-0.1;DP=108;ExcessHet=0.0000;FS=9.548;MQ=60.00;MQRankSum=0;QD=12.26;ReadPosRankSum=-0.97;SOR=0.849;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:99:68:0,125 0/1:19,20:39:99:.:478,0,474:6,13,12,8 +chrX 1019476 . C CA 772.97 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=23.20;BaseQRankSum=-2.594;DP=106;ExcessHet=0.0000;FS=5.073;MQ=60.00;MQRankSum=0;QD=23.20;ReadPosRankSum=0.253;SOR=0.220;VarDP=35 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:68:99:68:.:.:0,125 0|1:14,21:35:99:.:0|1:1019476_C_CA:812,0,513:1019476:4,10,10,11 +chrX 1019482 . T A 782 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=23.20;BaseQRankSum=-1.526;DP=107;ExcessHet=0.0000;FS=5.073;MQ=60.00;MQRankSum=0;QD=23.20;ReadPosRankSum=0.792;SOR=0.220;VarDP=35 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:68:99:68:.:.:0,125 0|1:14,21:35:99:.:0|1:1019476_C_CA:812,0,513:1019476:4,10,10,11 +chrX 1019717 . T C 943 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=9.93;BaseQRankSum=0.642;DP=100;ExcessHet=0.0000;FS=2.669;MQ=59.95;MQRankSum=0;QD=9.93;ReadPosRankSum=1.123;SOR=0.854;VarDP=98 GT:AD:DP:GQ:PL:SB 1:23,34:57:99:362,0:9,14,18,16 0/1:19,22:41:99:611,0,497:11,8,13,9 +chrX 1020259 . G A 1009 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=14.43;BaseQRankSum=-0.876;DP=135;ExcessHet=0.0000;FS=1.958;MQ=60.00;MQRankSum=0;QD=14.43;ReadPosRankSum=-0.299;SOR=0.830;VarDP=72 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,332 0/1:34,38:72:99:.:1039,0,934:16,18,21,17 +chrX 1020922 . CGTCTGACCCTCATTCCTTTTCCTGACTGTACAGTATTCCATTGTGTGTCTCTTCTCCCACTGGGCCTGATGTCTTCAAGGTTCATCCACTCTGCAGCCTGT C 45.97 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=0.99;BaseQRankSum=-0.279;DP=146;ExcessHet=0.0000;FS=5.719;MQ=58.17;MQRankSum=-2.131;QD=0.988;ReadPosRankSum=-0.04;SOR=1.134;VarDP=86 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,332 0/1:70,16:86:85:.:85,0,2724:31,39,10,6 +chrX 1021230 . G A 536 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=14.51;BaseQRankSum=-0.693;DP=98;ExcessHet=0.0000;FS=0.000;MQ=53.43;MQRankSum=0.408;QD=14.51;ReadPosRankSum=1.157;SOR=0.892;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,332 0/1:16,23:39:99:.:566,0,396:9,7,14,9 +chrX 1022137 . C T 3705 . AC=3;AF=1.00;AN=3;AS_AltDP=116;AS_QD=31.92;BaseQRankSum=2.395;DP=123;ExcessHet=0.0000;FS=3.278;MQ=59.96;MQRankSum=0;QD=31.92;ReadPosRankSum=1.562;SOR=0.446;VarDP=117 GT:AD:DP:GQ:PL:SB 1:1,70:71:99:2246,0:0,1,33,37 1/1:0,46:46:99:1489,138,0:0,0,29,17 +chrX 1022192 . C T 3254 . AC=3;AF=1.00;AN=3;AS_AltDP=102;AS_QD=32.20;DP=105;ExcessHet=0.0000;FS=0.000;MQ=59.95;QD=32.20;SOR=0.732;VarDP=102 GT:AD:DP:GQ:PL:SB 1:0,64:64:99:2074,0:0,0,31,33 1/1:0,38:38:99:1210,113,0:0,0,21,17 +chrX 1022370 . A AT 446.97 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=11.85;BaseQRankSum=-1.908;DP=103;ExcessHet=0.0000;FS=0.000;MQ=59.86;MQRankSum=1.125;QD=11.85;ReadPosRankSum=-0.772;SOR=0.602;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:55:99:55:0,134 0/1:19,22:41:99:.:486,0,421:9,10,11,11 +chrX 1022408 . G A 474 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=12.00;BaseQRankSum=1.393;DP=100;ExcessHet=0.0000;FS=9.199;MQ=59.85;MQRankSum=0.957;QD=12.00;ReadPosRankSum=0.961;SOR=1.960;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:55:99:55:0,134 0/1:23,19:42:99:.:504,0,593:12,11,5,14 +chrX 1022417 . GGA G 838.97 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=18.29;BaseQRankSum=1.02;DP=105;ExcessHet=0.0000;FS=4.047;MQ=59.87;MQRankSum=1.001;QD=18.29;ReadPosRankSum=0.124;SOR=1.315;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:55:99:55:0,134 0/1:25,23:48:99:.:878,0,963:12,13,8,15 +chrX 1022436 . T C 2404 . AC=2;AF=0.667;AN=3;AS_AltDP=80;AS_QD=23.18;BaseQRankSum=0.37;DP=112;ExcessHet=0.0000;FS=4.365;MQ=59.94;MQRankSum=-0.941;QD=23.18;ReadPosRankSum=-0.104;SOR=0.454;VarDP=105 GT:AD:DP:GQ:PL:SB 1:0,54:54:99:1739,0:0,0,29,25 0/1:25,26:51:99:695,0,666:10,15,12,14 +chrX 1022475 . A G 3468 . AC=3;AF=1.00;AN=3;AS_AltDP=108;AS_QD=32.39;DP=112;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.39;SOR=0.693;VarDP=108 GT:AD:DP:GQ:PL:SB 1:0,55:55:99:1716,0:0,0,30,25 1/1:0,53:53:99:1782,159,0:0,0,24,29 +chrX 1022576 . A G 3643 . AC=3;AF=1.00;AN=3;AS_AltDP=113;AS_QD=32.50;DP=115;ExcessHet=0.0000;FS=0.000;MQ=59.93;QD=32.50;SOR=0.822;VarDP=113 GT:AD:DP:GQ:PL:SB 1:0,62:62:99:2007,0:0,0,29,33 1/1:0,51:51:99:1666,153,0:0,0,31,20 +chrX 1022599 . T G 3698 . AC=3;AF=1.00;AN=3;AS_AltDP=119;AS_QD=31.33;DP=122;ExcessHet=0.0000;FS=0.000;MQ=59.71;QD=31.33;SOR=0.744;VarDP=119 GT:AD:DP:GQ:PL:SB 1:0,69:69:99:2146,0:0,0,33,36 1/1:0,50:50:99:1582,149,0:0,0,28,22 +chrX 1022620 . T C 3963 . AC=3;AF=1.00;AN=3;AS_AltDP=128;AS_QD=31.20;DP=132;ExcessHet=0.0000;FS=0.000;MQ=59.73;QD=31.20;SOR=0.693;VarDP=128 GT:AD:DP:GQ:PL:SB 1:0,75:75:99:2361,0:0,0,35,40 1/1:0,53:53:99:1632,158,0:0,0,29,24 +chrX 1023083 . C T 2147 . AC=3;AF=1.00;AN=3;AS_AltDP=90;AS_QD=18.45;BaseQRankSum=2.854;DP=126;ExcessHet=0.0000;FS=7.385;MQ=60.00;MQRankSum=0;QD=18.45;ReadPosRankSum=1.103;SOR=1.452;VarDP=118 GT:AD:DP:GQ:PL:SB 1:27,28:55:99:111,0:12,15,11,17 1/1:1,62:63:99:2066,179,0:1,0,18,44 +chrX 1023426 . TTTTATTTATTTA TTTTA,T 1482.97 . AC=1,2;AF=0.333,0.667;AN=3;AS_AltDP=19,30;AS_QD=5.38,29.76;BaseQRankSum=1.417;DP=106;ExcessHet=0.0000;FS=2.494;MQ=60.00;MQRankSum=0;QD=23.78;ReadPosRankSum=0.675;SOR=0.417;VarDP=64 GT:AD:DP:GQ:PL:SB 1:15,19,0:34:99:183,0,858:10,5,11,8 2/2:0,0,30:30:93:1339,1339,1339,93,93,0:0,0,17,13 +chrX 1023584 . G A 1691 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=33.10;DP=110;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.10;SOR=0.941;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:57:99:57:0,160 1/1:0,52:52:99:.:1721,156,0:0,0,23,29 +chrX 1023718 . A G 2039 . AC=3;AF=1.00;AN=3;AS_AltDP=101;AS_QD=14.99;BaseQRankSum=2.778;DP=144;ExcessHet=0.0000;FS=5.990;MQ=60.00;MQRankSum=0;QD=14.99;ReadPosRankSum=0.558;SOR=0.341;VarDP=138 GT:AD:DP:GQ:PL:SB 1:36,43:79:99:143,0:14,22,15,28 1/1:1,58:59:99:1926,167,0:0,1,35,23 +chrX 1024094 . A T 741 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=13.07;BaseQRankSum=-1.615;DP=128;ExcessHet=0.0000;FS=0.990;MQ=60.00;MQRankSum=0;QD=13.07;ReadPosRankSum=-0.895;SOR=0.897;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,1697 0/1:29,30:59:99:.:771,0,801:14,15,13,17 +chrX 1024113 . T C 802 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=14.60;BaseQRankSum=-0.983;DP=128;ExcessHet=0.0000;FS=3.654;MQ=60.00;MQRankSum=0;QD=14.60;ReadPosRankSum=-2.004;SOR=0.953;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,1697 0/1:26,31:57:99:.:832,0,688:14,12,13,18 +chrX 1024365 . T C 1766 . AC=1;AF=0.333;AN=3;AS_AltDP=55;AS_QD=32.65;DP=111;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.65;SOR=1.061;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,55:55:99:.:1796,0:0,0,32,23 0/0:.:54:99:54:0,105,1395 +chrX 1024396 . A C 703 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=17.45;BaseQRankSum=-1.363;DP=104;ExcessHet=0.0000;FS=7.267;MQ=60.00;MQRankSum=0;QD=17.45;ReadPosRankSum=-0.778;SOR=1.981;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:99:60:0,1484 0/1:16,26:42:99:.:733,0,430:8,8,19,7 +chrX 1024627 . T A 1172 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=18.78;BaseQRankSum=-1.987;DP=126;ExcessHet=0.0000;FS=0.000;MQ=55.36;MQRankSum=-3.879;QD=18.78;ReadPosRankSum=0.729;SOR=0.704;VarDP=64 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:60:99:60:.:.:0,1484 0|1:33,31:64:99:.:0|1:1024627_T_A:1202,0,1272:1024627:17,16,15,16 +chrX 1024631 . C G 834 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=13.29;BaseQRankSum=0.834;DP=127;ExcessHet=0.0000;FS=0.938;MQ=54.62;MQRankSum=2.973;QD=13.29;ReadPosRankSum=-0.551;SOR=0.648;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:99:60:0,1484 0/1:32,33:65:99:.:864,0,1225:15,17,17,16 +chrX 1024632 . G T 1166 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=18.12;BaseQRankSum=-0.338;DP=127;ExcessHet=0.0000;FS=0.000;MQ=54.34;MQRankSum=-2.955;QD=18.12;ReadPosRankSum=0.538;SOR=0.700;VarDP=66 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:60:99:60:.:.:0,1484 0|1:35,31:66:99:.:0|1:1024627_T_A:1196,0,1366:1024627:17,18,15,16 +chrX 1024641 . A G 1043 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=17.31;BaseQRankSum=-0.583;DP=122;ExcessHet=0.0000;FS=0.948;MQ=53.86;MQRankSum=-3.235;QD=17.31;ReadPosRankSum=0.074;SOR=0.836;VarDP=62 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:60:99:60:.:.:0,1484 0|1:34,28:62:99:.:0|1:1024627_T_A:1073,0,1313:1024627:17,17,13,15 +chrX 1024696 . G A 712 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=15.14;BaseQRankSum=0.804;DP=110;ExcessHet=0.0000;FS=1.114;MQ=49.52;MQRankSum=3.092;QD=15.14;ReadPosRankSum=0.885;SOR=0.461;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:99:60:0,1484 0/1:22,27:49:99:.:742,0,543:9,13,13,14 +chrX 1024728 . G A 1473 . AC=1;AF=0.333;AN=3;AS_AltDP=48;AS_QD=29.47;BaseQRankSum=1.36;DP=92;ExcessHet=0.0000;FS=0.000;MQ=50.85;MQRankSum=1.116;QD=29.47;ReadPosRankSum=-0.621;SOR=0.614;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 1:3,48:51:99:.:1503,0:2,1,28,20 0/0:.:39:87:39:0,87,1211 +chrX 1024762 . G C 352 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=9.55;BaseQRankSum=-0.049;DP=99;ExcessHet=0.0000;FS=1.267;MQ=40.51;MQRankSum=1.002;QD=9.55;ReadPosRankSum=-0.713;SOR=1.015;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:99:56:0,1623 0/1:25,15:40:99:.:382,0,694:12,13,6,9 +chrX 1024785 . C T 2951 . AC=3;AF=1.00;AN=3;AS_AltDP=90;AS_QD=32.76;BaseQRankSum=-0.253;DP=96;ExcessHet=0.0000;FS=0.000;MQ=44.99;MQRankSum=-1.469;QD=32.76;ReadPosRankSum=0.536;SOR=0.352;VarDP=91 GT:AD:DP:GQ:PL:SB 1:1,54:55:99:1781,0:1,0,32,22 1/1:0,36:36:99:1200,108,0:0,0,19,17 +chrX 1024812 . G A 730 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=18.54;BaseQRankSum=0.017;DP=103;ExcessHet=0.0000;FS=2.925;MQ=46.04;MQRankSum=-1.765;QD=18.54;ReadPosRankSum=-0.495;SOR=0.411;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,1490 0/1:14,27:41:99:.:760,0,309:9,5,13,14 +chrX 1024956 . C T 708 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=12.10;BaseQRankSum=-0.99;DP=124;ExcessHet=0.0000;FS=5.076;MQ=57.57;MQRankSum=1.092;QD=12.10;ReadPosRankSum=-1.549;SOR=0.299;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,1490 0/1:33,28:61:99:.:738,0,934:12,21,14,14 +chrX 1025071 . G C 705 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=15.31;BaseQRankSum=1.019;DP=111;ExcessHet=0.0000;FS=4.181;MQ=58.08;MQRankSum=1.666;QD=15.31;ReadPosRankSum=-0.728;SOR=0.283;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,1490 0/1:21,27:48:99:.:735,0,506:7,14,13,14 +chrX 1025127 . A C 1554 . AC=2;AF=0.667;AN=3;AS_AltDP=43;AS_QD=28.76;DP=92;ExcessHet=0.0000;FS=0.000;MQ=59.52;QD=36.84;SOR=1.055;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:49:18:49:0,18 1/1:0,43:43:99:.:1584,129,0:0,0,25,18 +chrX 1025151 . C T 751 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=20.03;BaseQRankSum=1.66;DP=88;ExcessHet=0.0000;FS=1.252;MQ=59.03;MQRankSum=-0.883;QD=20.03;ReadPosRankSum=2.536;SOR=0.941;VarDP=39 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:49:99:49:.:.:0,609 0|1:18,21:39:99:.:0|1:1025151_C_T:781,0,625:1025151:11,7,14,7 +chrX 1025167 . A C 785 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=20.90;BaseQRankSum=1.181;DP=88;ExcessHet=0.0000;FS=0.000;MQ=59.03;MQRankSum=-0.78;QD=20.90;ReadPosRankSum=1.571;SOR=0.859;VarDP=39 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:49:99:49:.:.:0,609 0|1:17,22:39:99:.:0|1:1025151_C_T:815,0,601:1025151:11,6,15,7 +chrX 1025224 . T A 356 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=15.44;BaseQRankSum=0.81;DP=77;ExcessHet=0.0000;FS=3.979;MQ=57.73;MQRankSum=-1.12;QD=15.44;ReadPosRankSum=-1.221;SOR=2.419;VarDP=25 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:49:99:49:0,609 0/1:10,15:25:99:.:386,0,233:9,1,15,0 +chrX 1025382 . T A 2211 . AC=2;AF=0.667;AN=3;AS_AltDP=74;AS_QD=22.64;BaseQRankSum=0.113;DP=103;ExcessHet=0.0000;FS=0.893;MQ=59.94;MQRankSum=0;QD=22.64;ReadPosRankSum=0.33;SOR=0.548;VarDP=99 GT:AD:DP:GQ:PL:SB 1:0,46:46:99:1478,0:0,0,19,27 0/1:25,28:53:99:763,0,670:9,16,11,17 +chrX 1025461 . G A 601 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=12.88;BaseQRankSum=2.644;DP=101;ExcessHet=0.0000;FS=4.022;MQ=60.00;MQRankSum=0;QD=12.88;ReadPosRankSum=-0.181;SOR=0.780;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:51:99:51:0,158 0/1:26,23:49:99:.:631,0,592:11,15,13,10 +chrX 1025641 . G C 905 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=14.61;BaseQRankSum=0.027;DP=116;ExcessHet=0.0000;FS=0.964;MQ=60.00;MQRankSum=0;QD=14.61;ReadPosRankSum=0.04;SOR=0.900;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:51:99:51:0,158 0/1:29,35:64:99:.:935,0,716:16,13,21,14 +chrX 1025683 . G C 3671 . AC=3;AF=1.00;AN=3;AS_AltDP=116;AS_QD=31.91;DP=118;ExcessHet=0.0000;FS=0.000;MQ=59.86;QD=31.91;SOR=0.918;VarDP=116 GT:AD:DP:GQ:PL:SB 1:0,54:54:99:1741,0:0,0,29,25 1/1:0,62:62:99:1960,186,0:0,0,35,27 +chrX 1025917 . T C 656 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=12.70;BaseQRankSum=-1.318;DP=116;ExcessHet=0.0000;FS=1.062;MQ=60.00;MQRankSum=0;QD=12.70;ReadPosRankSum=0.468;SOR=0.527;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:58:99:58:0,1457 0/1:26,28:54:99:.:686,0,682:17,9,17,11 +chrX 1025922 . G T 2188 . AC=1;AF=0.333;AN=3;AS_AltDP=50;AS_QD=28.86;DP=110;ExcessHet=0.0000;FS=0.000;MQ=57.47;QD=44.36;SOR=0.693;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,50:50:99:.:2218,0:0,0,25,25 0/0:.:60:99:60:0,110,1534 +chrX 1025924 . C T 2188 . AC=1;AF=0.333;AN=3;AS_AltDP=50;AS_QD=31.11;DP=111;ExcessHet=0.0000;FS=0.000;MQ=57.52;QD=44.36;SOR=0.693;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,50:50:99:.:2218,0:0,0,25,25 0/0:.:60:99:60:0,110,1534 +chrX 1025967 . A G 248 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=4.88;BaseQRankSum=-0.184;DP=120;ExcessHet=0.0000;FS=3.907;MQ=57.66;MQRankSum=-2.523;QD=4.88;ReadPosRankSum=0.679;SOR=0.301;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 1:24,33:57:99:.:278,0:7,17,14,19 0/0:.:60:99:60:0,110,1534 +chrX 1026022 . G A 110 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=2.50;BaseQRankSum=1.687;DP=116;ExcessHet=0.0000;FS=2.458;MQ=57.44;MQRankSum=-2.944;QD=2.50;ReadPosRankSum=-1.353;SOR=0.392;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 1:27,29:56:99:.:140,0:7,20,10,19 0/0:.:60:99:60:0,110,1534 +chrX 1026294 . A G 859 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=12.88;BaseQRankSum=-0.026;DP=134;ExcessHet=0.0000;FS=0.000;MQ=59.46;MQRankSum=0.51;QD=12.88;ReadPosRankSum=0.006;SOR=0.752;VarDP=69 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,223 0/1:36,33:69:99:.:889,0,964:18,18,17,16 +chrX 1026350 . A G 4166 . AC=3;AF=1.00;AN=3;AS_AltDP=133;AS_QD=31.55;DP=138;ExcessHet=0.0000;FS=0.000;MQ=59.57;QD=31.55;SOR=0.708;VarDP=133 GT:AD:DP:GQ:PL:SB 1:0,62:62:99:1964,0:0,0,29,33 1/1:0,71:71:99:2232,213,0:0,0,38,33 +chrX 1026439 . TC T 881.97 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=13.75;BaseQRankSum=0.489;DP=131;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.75;ReadPosRankSum=-0.462;SOR=0.781;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,1722 0/1:35,32:67:99:.:921,0,1058:15,20,13,19 +chrX 1026709 . G C 2483 . AC=2;AF=0.667;AN=3;AS_AltDP=80;AS_QD=24.16;BaseQRankSum=0.547;DP=110;ExcessHet=0.0000;FS=0.884;MQ=60.00;MQRankSum=0;QD=24.16;ReadPosRankSum=0.689;SOR=0.908;VarDP=104 GT:AD:DP:GQ:PL:SB 1:0,53:53:99:1802,0:0,0,29,24 0/1:24,27:51:99:711,0,597:12,12,15,12 +chrX 1026918 . T TCC 320.97 . AC=1;AF=0.333;AN=3;AS_AltDP=10;AS_QD=18.95;BaseQRankSum=0.088;DP=86;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=18.95;ReadPosRankSum=-1.308;SOR=0.818;VarDP=19 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:52:99:52:.:.:0,920 0|1:9,10:19:99:.:0|1:1026918_T_TCC:360,0,351:1026918:2,7,2,8 +chrX 1026927 . T TCCTCCTCCACCTCCCCC 470.97 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=23.18;BaseQRankSum=1.346;DP=77;ExcessHet=0.0000;FS=2.643;MQ=60.00;MQRankSum=0;QD=23.18;ReadPosRankSum=-1.387;SOR=1.938;VarDP=22 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:52:99:52:.:.:0,920 0|1:9,13:22:99:.:0|1:1026918_T_TCC:510,0,339:1026918:2,7,1,12 +chrX 1027040 . C T 2848 . AC=3;AF=1.00;AN=3;AS_AltDP=85;AS_QD=33.86;DP=91;ExcessHet=0.0000;FS=0.000;MQ=59.84;QD=33.86;SOR=1.039;VarDP=85 GT:AD:DP:GQ:PL:SB 1:0,51:51:99:1707,0:0,0,29,22 1/1:0,34:34:99:1171,102,0:0,0,20,14 +chrX 1027089 . C T 449 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=14.09;BaseQRankSum=0.042;DP=101;ExcessHet=0.0000;FS=9.298;MQ=59.76;MQRankSum=-0.941;QD=14.09;ReadPosRankSum=1.516;SOR=0.064;VarDP=34 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,1697 0/1:17,17:34:99:.:479,0,479:15,2,10,7 +chrX 1027238 . A G 3975 . AC=3;AF=1.00;AN=3;AS_AltDP=124;AS_QD=32.30;DP=133;ExcessHet=0.0000;FS=0.000;MQ=59.96;QD=32.30;SOR=1.107;VarDP=124 GT:AD:DP:GQ:PL:SB 1:0,62:62:99:2030,0:0,0,35,27 1/1:0,62:62:99:1975,185,0:0,0,38,24 +chrX 1027289 . ATCAC A 1256.97 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=20.57;BaseQRankSum=0.995;DP=130;ExcessHet=0.0000;FS=3.495;MQ=60.00;MQRankSum=0;QD=20.57;ReadPosRankSum=0.494;SOR=1.170;VarDP=63 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:64:44:64:.:.:0,44 0|1:30,33:63:99:.:0|1:1027289_ATCAC_A:1296,0,1160:1027289:17,13,22,11 +chrX 1027295 . CGGTATTTGT C 1240.97 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=18.82;BaseQRankSum=0.465;DP=134;ExcessHet=0.0000;FS=3.349;MQ=60.00;MQRankSum=0;QD=18.82;ReadPosRankSum=0.922;SOR=1.142;VarDP=68 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:64:44:64:.:.:0,44 0|1:35,33:68:99:.:0|1:1027289_ATCAC_A:1280,0,1370:1027289:20,15,22,11 +chrX 1027306 . C T 1257 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=19.50;BaseQRankSum=1.998;DP=134;ExcessHet=0.0000;FS=2.130;MQ=60.00;MQRankSum=0;QD=19.50;ReadPosRankSum=1.293;SOR=1.121;VarDP=66 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:64:44:64:.:.:0,44 0|1:33,33:66:99:.:0|1:1027289_ATCAC_A:1287,0,1286:1027289:19,14,22,11 +chrX 1027532 . TTTTCTTTC T 672.97 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=14.83;BaseQRankSum=-0.195;DP=128;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.83;ReadPosRankSum=0.948;SOR=0.791;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:44:64:0,44 0/1:29,19:48:99:.:712,0,1154:13,16,8,11 +chrX 1027660 . C CTT 1577.97 . AC=2;AF=0.667;AN=3;AS_AltDP=41;AS_QD=24.50;BaseQRankSum=-0.285;DP=78;ExcessHet=0.0000;FS=0.000;MQ=59.38;MQRankSum=-0.941;QD=24.50;ReadPosRankSum=0.185;SOR=0.874;VarDP=66 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,15:15:99:.:.:618,0:.:0,0,0,7 0|1:25,26:51:99:0|1:1027660_C_CTT:999,0,962:1027660:6,19,7,19 +chrX 1027662 . C CTCT 1620.97 . AC=2;AF=0.667;AN=3;AS_AltDP=42;AS_QD=24.78;BaseQRankSum=-1.638;DP=74;ExcessHet=0.0000;FS=1.182;MQ=59.34;MQRankSum=-0.924;QD=24.78;ReadPosRankSum=0.437;SOR=0.917;VarDP=67 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,15:15:99:.:.:618,0:.:0,0,0,7 0|1:25,27:52:99:0|1:1027660_C_CTT:1042,0,958:1027660:6,19,7,20 +chrX 1027672 . C T 1880 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=27.29;BaseQRankSum=-0.778;DP=71;ExcessHet=0.0000;FS=0.000;MQ=59.06;MQRankSum=-0.917;QD=27.29;ReadPosRankSum=-0.149;SOR=0.555;VarDP=70 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,22:22:99:.:.:930,0:.:0,0,2,12 0|1:23,25:48:99:0|1:1027660_C_CTT:980,0,891:1027660:5,18,8,17 +chrX 1027679 . T TTCTC 1919.97 . AC=2;AF=0.667;AN=3;AS_AltDP=48;AS_QD=27.59;BaseQRankSum=-0.905;DP=71;ExcessHet=0.0000;FS=0.000;MQ=59.06;MQRankSum=-0.936;QD=27.59;ReadPosRankSum=-0.682;SOR=0.789;VarDP=71 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,24:24:99:.:.:1020,0:.:0,0,2,14 0|1:23,24:47:99:0|1:1027660_C_CTT:939,0,894:1027660:6,17,8,16 +chrX 1027701 . T TTTCC 2305.97 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=27.92;BaseQRankSum=-0.043;DP=84;ExcessHet=0.0000;FS=3.822;MQ=58.92;MQRankSum=-1.428;QD=27.92;ReadPosRankSum=-0.472;SOR=1.368;VarDP=84 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,31:31:99:.:.:1335,0:.:0,0,4,19 0|1:27,26:53:99:0|1:1027660_C_CTT:1010,0,1055:1027660:9,18,7,19 +chrX 1027721 . C T 2459 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=29.63;BaseQRankSum=0.86;DP=84;ExcessHet=0.0000;FS=2.366;MQ=58.83;MQRankSum=-1.675;QD=29.63;ReadPosRankSum=-0.96;SOR=1.087;VarDP=84 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,34:34:99:.:.:1470,0:.:0,0,4,22 0|1:24,26:50:99:0|1:1027660_C_CTT:1019,0,929:1027660:7,17,8,18 +chrX 1027741 . T TTC 2678.97 . AC=2;AF=0.667;AN=3;AS_AltDP=65;AS_QD=30.54;BaseQRankSum=-0.466;DP=89;ExcessHet=0.0000;FS=7.335;MQ=58.64;MQRankSum=-2.001;QD=30.54;ReadPosRankSum=0.413;SOR=1.617;VarDP=89 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,40:40:99:.:.:1740,0:.:0,0,6,26 0|1:24,25:49:99:0|1:1027660_C_CTT:978,0,933:1027660:9,15,7,18 +chrX 1027745 . C CTTTTCTTCTTTCTCTT,CTTTTTTTCTTTCTCTT 2582.97 . AC=2,0;AF=0.667,0.00;AN=3;AS_AltDP=57,2;AS_QD=31.98,15.11;BaseQRankSum=0.141;DP=93;ExcessHet=0.0000;FS=7.414;MQ=58.70;MQRankSum=-2.085;QD=31.21;ReadPosRankSum=0.68;SOR=1.735;VarDP=84 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,33,2:35:99:.:.:1690,0,1282:.:0,0,6,26 0|1:25,24,0:49:99:0|1:1027660_C_CTT:932,0,966,1008,1039,2046:1027660:10,15,7,17 +chrX 1027779 . T TTCTC 3881.97 . AC=3;AF=1.00;AN=3;AS_AltDP=92;AS_QD=21.53;DP=101;ExcessHet=0.0000;FS=0.000;MQ=59.23;QD=42.62;SOR=1.346;VarDP=92 GT:AD:DP:GQ:PL:SB 1:0,46:46:99:1961,0:0,0,17,29 1/1:0,46:46:99:1960,138,0:0,0,17,29 +chrX 1027800 . C CT 604.97 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=15.71;BaseQRankSum=-0.58;DP=93;ExcessHet=0.0000;FS=4.498;MQ=59.79;MQRankSum=0.978;QD=15.71;ReadPosRankSum=1.203;SOR=0.451;VarDP=41 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:48:99:48:.:.:0,950 0|1:22,19:41:99:.:0|1:1027800_C_CT:644,0,793:1027800:8,14,10,9 +chrX 1027828 . T C 682 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=16.18;BaseQRankSum=-0.758;DP=94;ExcessHet=0.0000;FS=2.498;MQ=60.00;MQRankSum=0;QD=16.18;ReadPosRankSum=0.114;SOR=0.933;VarDP=44 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:48:99:48:.:.:0,950 0|1:23,21:44:99:.:0|1:1027800_C_CT:712,0,833:1027800:11,12,12,9 +chrX 1027982 . G C 2781 . AC=3;AF=1.00;AN=3;AS_AltDP=89;AS_QD=31.58;DP=98;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.58;SOR=0.761;VarDP=89 GT:AD:DP:GQ:PL:SB 1:0,44:44:99:1423,0:0,0,25,19 1/1:0,45:45:99:1388,134,0:0,0,18,27 +chrX 1028049 . C CTTCCTTCCTTCT 424.97 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=18.56;BaseQRankSum=-0.282;DP=83;ExcessHet=0.0000;FS=6.239;MQ=60.00;MQRankSum=0;QD=18.56;ReadPosRankSum=-2.153;SOR=0.707;VarDP=25 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:50:99:50:0,1324 0/1:13,12:25:99:.:464,0,472:4,9,7,5 +chrX 1028201 . A G 4144 . AC=3;AF=1.00;AN=3;AS_AltDP=93;AS_QD=27.86;DP=96;ExcessHet=0.0000;FS=0.000;MQ=59.86;QD=44.88;SOR=0.852;VarDP=93 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,42:42:99:.:.:1890,0:.:0,0,21,21 1|1:0,51:51:99:0|1:1028201_A_G:2284,154,0:1028201:0,0,29,22 +chrX 1028203 . G C 4179 . AC=3;AF=1.00;AN=3;AS_AltDP=94;AS_QD=28.60;DP=94;ExcessHet=0.0000;FS=0.000;MQ=59.86;QD=44.78;SOR=0.874;VarDP=94 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,42:42:99:.:.:1890,0:.:0,0,21,21 1|1:0,52:52:99:0|1:1028201_A_G:2319,157,0:1028201:0,0,30,22 +chrX 1028205 . G A 4179 . AC=3;AF=1.00;AN=3;AS_AltDP=94;AS_QD=33.11;DP=95;ExcessHet=0.0000;FS=0.000;MQ=59.86;QD=44.78;SOR=0.924;VarDP=94 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,42:42:99:.:.:1890,0:.:0,0,21,21 1|1:0,52:52:99:0|1:1028201_A_G:2319,157,0:1028201:0,0,31,21 +chrX 1028213 . G A 624 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=13.08;BaseQRankSum=1.275;DP=118;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.08;ReadPosRankSum=0.563;SOR=0.576;VarDP=50 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:67:99:67:.:.:0,1459 0|1:26,24:50:99:.:0|1:1028201_A_G:654,0,683:1028201:16,10,14,10 +chrX 1028567 . T C 523 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=11.29;BaseQRankSum=-0.317;DP=123;ExcessHet=0.0000;FS=2.424;MQ=60.00;MQRankSum=0;QD=11.29;ReadPosRankSum=0.561;SOR=0.552;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,1459 0/1:26,23:49:99:.:553,0,672:11,15,12,11 +chrX 1028649 . G C 3221 . AC=2;AF=0.667;AN=3;AS_AltDP=103;AS_QD=25.20;BaseQRankSum=1.947;DP=136;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=25.20;ReadPosRankSum=0.473;SOR=0.763;VarDP=129 GT:AD:DP:GQ:PL:SB 1:0,72:72:99:2345,0:0,0,31,41 0/1:26,31:57:99:906,0,702:12,14,15,16 +chrX 1029274 . G A 503 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=11.84;BaseQRankSum=0.058;DP=116;ExcessHet=0.0000;FS=4.364;MQ=60.00;MQRankSum=0;QD=11.84;ReadPosRankSum=-2.231;SOR=1.508;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,1667 0/1:24,21:45:99:.:533,0,629:12,12,7,14 +chrX 1029445 . C G 3129 . AC=2;AF=0.667;AN=3;AS_AltDP=100;AS_QD=26.33;BaseQRankSum=2.931;DP=124;ExcessHet=0.0000;FS=0.905;MQ=60.00;MQRankSum=0;QD=26.33;ReadPosRankSum=2.384;SOR=0.818;VarDP=120 GT:AD:DP:GQ:PL:SB 1:0,69:69:99:2256,0:0,0,35,34 0/1:20,31:51:99:903,0,462:10,10,18,13 +chrX 1029617 . A G 4360 . AC=2;AF=0.667;AN=3;AS_AltDP=104;AS_QD=33.51;BaseQRankSum=0.32;DP=134;ExcessHet=0.0000;FS=8.883;MQ=60.00;MQRankSum=0;QD=33.51;ReadPosRankSum=1.225;SOR=0.365;VarDP=131 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,72:72:99:.:.:3158,0:.:0,0,38,34 0|1:27,32:59:99:0|1:1029617_A_G:1232,0,1006:1029617:18,9,12,20 +chrX 1029625 . A G 4373 . AC=2;AF=0.667;AN=3;AS_AltDP=104;AS_QD=33.36;BaseQRankSum=-0.461;DP=134;ExcessHet=0.0000;FS=6.961;MQ=60.00;MQRankSum=0;QD=33.36;ReadPosRankSum=0.959;SOR=0.346;VarDP=132 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,71:71:99:.:.:3143,0:.:0,0,38,33 0|1:28,33:61:99:0|1:1029617_A_G:1260,0,1035:1029617:18,10,13,20 +chrX 1029650 . G A 3429 . AC=2;AF=0.667;AN=3;AS_AltDP=112;AS_QD=24.88;BaseQRankSum=2.037;DP=145;ExcessHet=0.0000;FS=5.457;MQ=60.00;MQRankSum=0;QD=24.88;ReadPosRankSum=-0.472;SOR=0.317;VarDP=139 GT:AD:DP:GQ:PL:SB 1:0,76:76:99:2456,0:0,0,39,37 0/1:27,36:63:99:1003,0,590:17,10,17,19 +chrX 1029806 . T C 2315 . AC=2;AF=0.667;AN=3;AS_AltDP=83;AS_QD=21.51;BaseQRankSum=-0.804;DP=113;ExcessHet=0.0000;FS=5.856;MQ=59.95;MQRankSum=0;QD=21.51;ReadPosRankSum=-2.054;SOR=0.280;VarDP=109 GT:AD:DP:GQ:PL:SB 1:0,53:53:99:1596,0:0,0,24,29 0/1:26,30:56:99:749,0,687:9,17,17,13 +chrX 1029919 . T TAAAAAAA 569.97 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=15.23;BaseQRankSum=0.998;DP=109;ExcessHet=0.0000;FS=0.000;MQ=59.15;MQRankSum=-1.63;QD=15.23;ReadPosRankSum=-2.371;SOR=0.657;VarDP=40 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:99:63:.:.:0,1754 0|1:23,17:40:99:.:0|1:1029919_T_TAAAAAAA:609,0,838:1029919:15,8,11,6 +chrX 1029934 . A AAC 3295.97 . AC=2;AF=0.667;AN=3;AS_AltDP=82;AS_QD=32.70;BaseQRankSum=-0.15;DP=109;ExcessHet=0.0000;FS=0.945;MQ=59.69;MQRankSum=1.662;QD=32.70;ReadPosRankSum=-0.024;SOR=0.527;VarDP=102 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,56:56:99:.:.:2421,0:.:0,0,24,32 0|1:20,26:46:99:1|0:1029919_T_TAAAAAAA:914,0,672:1029919:11,9,17,9 +chrX 1030044 . C T 2810 . AC=2;AF=0.667;AN=3;AS_AltDP=89;AS_QD=23.47;BaseQRankSum=4.026;DP=131;ExcessHet=0.0000;FS=6.613;MQ=60.00;MQRankSum=0;QD=23.47;ReadPosRankSum=1.423;SOR=0.876;VarDP=121 GT:AD:DP:GQ:PL:SB 1:0,60:60:99:2025,0:0,0,36,24 0/1:32,29:61:99:815,0,769:14,18,15,14 +chrX 1030110 . A T 2662 . AC=2;AF=0.667;AN=3;AS_AltDP=85;AS_QD=24.25;BaseQRankSum=-0.245;DP=119;ExcessHet=0.0000;FS=0.000;MQ=59.96;MQRankSum=0;QD=24.25;ReadPosRankSum=-0.064;SOR=0.702;VarDP=111 GT:AD:DP:GQ:PL:SB 1:0,54:54:99:1817,0:0,0,25,29 0/1:26,31:57:99:875,0,712:10,16,8,23 +chrX 1030169 . G A 2537 . AC=2;AF=0.667;AN=3;AS_AltDP=83;AS_QD=23.13;BaseQRankSum=-0.113;DP=118;ExcessHet=0.0000;FS=0.000;MQ=59.96;MQRankSum=0;QD=23.13;ReadPosRankSum=1.297;SOR=0.785;VarDP=111 GT:AD:DP:GQ:PL:SB 1:0,56:56:99:1859,0:0,0,26,30 0/1:28,27:55:99:708,0,758:12,16,8,19 +chrX 1030259 . A G 2216 . AC=2;AF=0.667;AN=3;AS_AltDP=75;AS_QD=22.02;BaseQRankSum=-1.394;DP=107;ExcessHet=0.0000;FS=3.128;MQ=59.76;MQRankSum=0;QD=22.02;ReadPosRankSum=0.211;SOR=1.183;VarDP=102 GT:AD:DP:GQ:PL:SB 1:0,50:50:99:1623,0:0,0,16,34 0/1:27,25:52:99:623,0,731:12,15,10,15 +chrX 1030893 . T C 2468 . AC=2;AF=0.667;AN=3;AS_AltDP=81;AS_QD=25.23;BaseQRankSum=-2.465;DP=119;ExcessHet=0.0000;FS=0.985;MQ=59.89;MQRankSum=1.248;QD=25.23;ReadPosRankSum=1.147;SOR=0.532;VarDP=99 GT:AD:DP:GQ:PL:SB 1:0,55:55:99:1836,0:0,0,27,28 0/1:18,26:44:99:662,0,469:10,8,14,12 +chrX 1030969 . CAA C 2097.97 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=30.10;BaseQRankSum=2.101;DP=98;ExcessHet=0.0000;FS=2.298;MQ=59.74;MQRankSum=0;QD=30.10;ReadPosRankSum=-0.833;SOR=0.445;VarDP=71 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,43:44:99:.:.:1768,0:.:0,1,18,25 0|1:17,10:27:99:0|1:1030969_CAA_C:369,0,673:1030969:6,11,4,6 +chrX 1030981 . A T 1646 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=19.72;BaseQRankSum=3.831;DP=96;ExcessHet=0.0000;FS=6.123;MQ=58.95;MQRankSum=-0.794;QD=19.72;ReadPosRankSum=-0.991;SOR=0.285;VarDP=85 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:6,48:54:99:.:.:1286,0:.:0,6,24,24 0|1:20,11:31:99:0|1:1030969_CAA_C:390,0,761:1030969:9,11,5,6 +chrX 1031033 . C A 2678 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=32.24;BaseQRankSum=2.288;DP=92;ExcessHet=0.0000;FS=0.000;MQ=58.50;MQRankSum=-1.166;QD=32.24;ReadPosRankSum=-0.91;SOR=0.710;VarDP=84 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,49:49:99:.:.:2183,0:.:0,0,29,20 0|1:21,14:35:99:0|1:1031033_C_A:525,0,840:1031033:12,9,7,7 +chrX 1031038 . G GGAGAAAGAGA 2638.97 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=31.88;BaseQRankSum=0.647;DP=92;ExcessHet=0.0000;FS=0.000;MQ=57.95;MQRankSum=-1.697;QD=31.88;ReadPosRankSum=-1.846;SOR=0.807;VarDP=84 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,47:47:99:.:.:2114,0:.:0,0,30,17 0|1:22,15:37:99:0|1:1031033_C_A:564,0,879:1031033:13,9,8,7 +chrX 1031048 . A AAAT 2246.97 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=30.48;BaseQRankSum=-0.849;DP=81;ExcessHet=0.0000;FS=2.185;MQ=57.00;MQRankSum=-2.488;QD=30.48;ReadPosRankSum=-0.468;SOR=1.041;VarDP=75 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,42:42:99:.:.:1890,0:.:0,0,28,14 0|1:22,11:33:99:0|1:1031033_C_A:396,0,891:1031033:13,9,7,4 +chrX 1031053 . G GAAAGA 2189.97 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=30.12;DP=80;ExcessHet=0.0000;FS=2.917;MQ=56.74;QD=30.12;SOR=1.721;VarDP=74 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,41:41:99:.:.:1835,0:.:0,0,2,0 0|1:22,11:33:99:0|1:1031053_G_GAAAGA:394,0,891:1031053:13,9,0,0 +chrX 1031058 . AG A 41.97 . AC=1;AF=0.333;AN=3;AS_AltDP=2;AS_QD=30.49;DP=76;ExcessHet=0.0000;FS=0.000;MQ=55.39;QD=40.50;SOR=2.303;VarDP=2 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,2:2:81:.:81,0:0,0,2,0 0/0:.:31:24:31:0,24,919 +chrX 1031059 . GGAGA *,G 266.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=0,9;AS_QD=0.00,9.27;DP=79;ExcessHet=0.0000;FS=2.764;MQ=58.38;QD=9.27;SOR=1.508;VarDP=33 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,2,0:2:81:.:.:81,0,90:.:0,0,2,0 0|2:24,0,9:33:99:0|1:1031059_GGAGA_G:306,203,1184,0,1008,981:1031059:15,9,0,0 +chrX 1031067 . AC A 131.97 . AC=1;AF=0.333;AN=3;AS_AltDP=4;AS_QD=29.53;DP=79;ExcessHet=0.0000;FS=0.000;MQ=54.44;QD=42.75;SOR=3.258;VarDP=4 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,4:4:99:.:171,0:0,0,4,0 0/0:.:32:58:32:0,58,968 +chrX 1031068 . C *,A 276 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=0,9;AS_QD=0.00,9.27;BaseQRankSum=0.666;DP=81;ExcessHet=0.0000;FS=8.158;MQ=57.69;MQRankSum=-4.695;QD=9.27;ReadPosRankSum=-1.589;SOR=2.712;VarDP=33 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,4,0:4:99:.:.:171,0,180:.:0,0,4,0 0|2:24,0,9:33:99:0|1:1031059_GGAGA_G:306,221,1204,0,1008,981:1031059:15,9,1,0 +chrX 1031070 . G GGAA 131.97 . AC=1;AF=0.333;AN=3;AS_AltDP=4;AS_QD=30.36;DP=77;ExcessHet=0.0000;FS=0.000;MQ=54.31;QD=42.75;SOR=3.258;VarDP=4 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,4:4:99:.:171,0:0,0,4,0 0/0:.:31:58:31:0,58,978 +chrX 1031079 . G A 142 . AC=1;AF=0.333;AN=3;AS_AltDP=4;AS_QD=27.97;DP=73;ExcessHet=0.0000;FS=0.000;MQ=53.30;QD=43.00;SOR=3.258;VarDP=4 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,4:4:99:.:172,0:0,0,4,0 0/0:.:31:0:31:0,0,640 +chrX 1031084 . A G,* 144 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=4,0;AS_QD=35.21,35.18;DP=73;ExcessHet=0.0000;FS=5.374;MQ=53.13;QD=43.50;SOR=2.368;VarDP=4 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,4,0:4:99:.:.:174,0,284:.:0,0,4,0 0|2:24,0,2:26:7:0|1:1031059_GGAGA_G:7,79,1087,0,1008,1001:1031059:17,7,2,0 +chrX 1031085 . ATG *,A 134.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=0,4;AS_QD=32.25,34.86;DP=73;ExcessHet=0.0000;FS=5.374;MQ=53.13;QD=43.50;SOR=2.368;VarDP=4 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 2:0,0,4:4:99:.:.:174,386,0:.:0,0,4,0 0|1:24,2,0:26:7:0|1:1031059_GGAGA_G:7,0,1001,79,1008,1087:1031059:17,7,2,0 +chrX 1031095 . G GA 54.97 . AC=1;AF=0.333;AN=3;AS_AltDP=4;AS_QD=3.48;BaseQRankSum=1.033;DP=68;ExcessHet=0.0000;FS=2.634;MQ=56.78;MQRankSum=-3.588;QD=3.48;ReadPosRankSum=-1.912;SOR=1.565;VarDP=27 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:35:99:35:.:.:0,630 0|1:23,4:27:94:.:0|1:1031059_GGAGA_G:94,0,953:1031059:17,6,4,0 +chrX 1031101 . AG A 102.97 . AC=1;AF=0.333;AN=3;AS_AltDP=5;AS_QD=5.46;BaseQRankSum=0.266;DP=67;ExcessHet=0.0000;FS=0.000;MQ=55.91;MQRankSum=-3.782;QD=5.46;ReadPosRankSum=-1.529;SOR=0.394;VarDP=26 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:35:99:35:.:.:0,630 0|1:21,5:26:99:.:0|1:1031059_GGAGA_G:142,0,866:1031059:17,4,4,1 +chrX 1031102 . G GA,GAA,* 1577.97 . AC=0,1,1;AF=0.00,0.333,0.333;AN=3;AS_AltDP=0,7,0;AS_QD=29.05,31.88,0.00;BaseQRankSum=1.383;DP=76;ExcessHet=0.0000;FS=4.152;MQ=53.36;MQRankSum=-1.611;QD=179.67;ReadPosRankSum=1.383;SOR=1.718;VarDP=9 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 2:2,0,7,0:9:99:.:.:1617,358,0,622:.:0,2,6,0 0|3:21,0,0,5:26:99:0|1:1031059_GGAGA_G:142,205,1087,205,1087,1087,0,882,882,866:1031059:17,4,4,1 +chrX 1031108 . GA G 180.97 . AC=1;AF=0.333;AN=3;AS_AltDP=7;AS_QD=7.33;BaseQRankSum=0.88;DP=71;ExcessHet=0.0000;FS=0.000;MQ=55.64;MQRankSum=-2.481;QD=7.33;ReadPosRankSum=-1.092;SOR=1.048;VarDP=30 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:35:99:35:.:.:0,360 0|1:23,7:30:99:.:0|1:1031059_GGAGA_G:220,0,944:1031059:17,6,6,1 +chrX 1031126 . A T 310 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=10.97;BaseQRankSum=-1.816;DP=101;ExcessHet=0.0000;FS=3.920;MQ=55.46;MQRankSum=-1.181;QD=10.97;ReadPosRankSum=-0.723;SOR=0.200;VarDP=31 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:65:65:65:.:.:0,65 0|1:20,11:31:99:.:0|1:1031059_GGAGA_G:340,0,807:1031059:16,4,7,4 +chrX 1031144 . G GA 619.97 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=21.26;BaseQRankSum=0.443;DP=105;ExcessHet=0.0000;FS=0.000;MQ=55.94;MQRankSum=1.482;QD=21.26;ReadPosRankSum=-0.119;SOR=0.963;VarDP=31 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:65:65:65:.:.:0,65 0|1:14,17:31:99:.:1|0:1031033_C_A:659,0,538:1031033:10,4,13,4 +chrX 1031152 . GA G 589.97 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=20.97;BaseQRankSum=-0.805;DP=105;ExcessHet=0.0000;FS=0.000;MQ=55.94;MQRankSum=1.387;QD=20.97;ReadPosRankSum=-0.437;SOR=0.874;VarDP=30 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:65:65:65:.:.:0,65 0|1:14,16:30:99:.:1|0:1031033_C_A:629,0,541:1031033:10,4,12,4 +chrX 1031156 . A G 315 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=11.90;BaseQRankSum=-0.307;DP=106;ExcessHet=0.0000;FS=3.638;MQ=56.04;MQRankSum=-1.027;QD=11.90;ReadPosRankSum=1.777;SOR=0.250;VarDP=29 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:65:65:65:.:.:0,65 0|1:18,11:29:99:.:0|1:1031059_GGAGA_G:345,0,724:1031059:14,4,7,4 +chrX 1031157 . G A 315 . AC=1;AF=0.500;AN=2;AS_AltDP=11;AS_QD=11.90;BaseQRankSum=1.025;DP=96;ExcessHet=0.0000;FS=3.638;MQ=56.04;MQRankSum=-1.027;QD=11.90;ReadPosRankSum=1.688;SOR=0.250;VarDP=29 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB .:.:55:0:55:.:.:0,0 0|1:18,11:29:99:.:0|1:1031059_GGAGA_G:345,0,724:1031059:14,4,7,4 +chrX 1031171 . AG A 299.97 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=10.94;BaseQRankSum=0.497;DP=103;ExcessHet=0.0000;FS=0.000;MQ=56.70;MQRankSum=-1.181;QD=10.94;ReadPosRankSum=2.376;SOR=0.443;VarDP=31 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:59:99:59:.:.:0,1245 0|1:20,11:31:99:.:0|1:1031059_GGAGA_G:339,0,808:1031059:14,6,7,4 +chrX 1031172 . GAGAAAGAAAGAAAGAAAGA G,GAGAAAGAAAGAAAGA,*,GAAAAGAAAGAAAGAAAGAAAGA 2231.97 . AC=1,0,1,1;AF=0.333,0.00,0.333,0.333;AN=3;AS_AltDP=28,0,11,10;AS_QD=30.31,29.84,0.00,28.80;DP=81;ExcessHet=0.0000;FS=0.000;MQ=57.99;QD=46.35;SOR=1.007;VarDP=49 GT:AD:DP:GQ:PL:SB 1:0,28,0,0,0:28:99:1208,0,1208,1208,1208:0,0,15,13 3/4:0,0,0,11,10:21:99:1063,1004,1386,905,1076,1499,550,940,665,906,515,454,835,0,834:0,0,13,8 +chrX 1031174 . GA *,G,AA 815 . AC=1,1,0;AF=0.333,0.333,0.00;AN=3;AS_AltDP=0,11,0;AS_QD=0.00,30.22,31.80;BaseQRankSum=-0.464;DP=77;ExcessHet=0.0000;FS=0.000;MQ=56.70;MQRankSum=-0.161;QD=40.24;ReadPosRankSum=0.282;SOR=0.606;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,28,0,0:28:99:1208,0,1208,1208:0,0,15,13 0/2:10,0,11,0:21:99:845,395,1022,0,635,771,527,800,559,1086:6,4,7,4 +chrX 1031176 . A *,AGAAAGAAAGAAAG 469.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=0,10;AS_QD=0.00,24.24;BaseQRankSum=0;DP=77;ExcessHet=0.0000;FS=1.326;MQ=56.70;MQRankSum=0.242;QD=24.24;ReadPosRankSum=-0.529;SOR=0.460;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:1208,0,1208:0,0,15,13 0/2:11,0,10:21:99:509,402,1041,0,414,865:7,4,6,4 +chrX 1031190 . GA *,G 764.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=0,11;AS_QD=0.00,27.72;BaseQRankSum=0.351;DP=78;ExcessHet=0.0000;FS=1.097;MQ=56.78;MQRankSum=-1.027;QD=27.72;ReadPosRankSum=2.788;SOR=0.968;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:1208,0,1208:0,0,15,13 0/2:18,0,11:29:99:804,420,1275,0,703,660:9,9,7,4 +chrX 1031438 . A G 2887 . AC=2;AF=0.667;AN=3;AS_AltDP=98;AS_QD=23.15;BaseQRankSum=-1.077;DP=132;ExcessHet=0.0000;FS=1.729;MQ=59.93;MQRankSum=0;QD=23.15;ReadPosRankSum=-1.462;SOR=0.914;VarDP=126 GT:AD:DP:GQ:PL:SB 1:0,69:69:99:2181,0:0,0,27,42 0/1:28,29:57:99:736,0,742:14,14,17,12 +chrX 1031528 . G GA,A 2015 . AC=2,0;AF=0.667,0.00;AN=3;AS_AltDP=78,1;AS_QD=19.11,0.00;BaseQRankSum=-1.913;DP=128;ExcessHet=0.0000;FS=1.761;MQ=59.89;MQRankSum=0.948;QD=18.94;ReadPosRankSum=1.502;SOR=0.547;VarDP=108 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:1539,0,1539:0,0,29,26 0/1:29,23,1:53:99:506,0,675,638,766,1901:16,13,10,14 +chrX 1031918 . G C 623 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=11.87;BaseQRankSum=-0.594;DP=124;ExcessHet=0.0000;FS=3.772;MQ=60.00;MQRankSum=0;QD=11.87;ReadPosRankSum=-1.012;SOR=0.338;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:99:68:0,1494 0/1:29,26:55:99:.:653,0,783:10,19,12,14 +chrX 1032007 . C T 773 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=11.99;BaseQRankSum=1.91;DP=136;ExcessHet=0.0000;FS=3.397;MQ=60.00;MQRankSum=0;QD=11.99;ReadPosRankSum=0.378;SOR=1.255;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:99:68:0,1494 0/1:37,30:67:99:.:803,0,920:18,19,11,19 +chrX 1032087 . C G 856 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=14.29;BaseQRankSum=0.578;DP=132;ExcessHet=0.0000;FS=8.994;MQ=60.00;MQRankSum=0;QD=14.29;ReadPosRankSum=0.374;SOR=0.974;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:99:68:0,1494 0/1:29,33:62:99:.:886,0,737:18,11,13,20 +chrX 1032612 . G A 4040 . AC=3;AF=1.00;AN=3;AS_AltDP=124;AS_QD=32.82;DP=130;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.82;SOR=0.981;VarDP=124 GT:AD:DP:GQ:PL:SB 1:0,78:78:99:2561,0:0,0,48,30 1/1:0,46:46:99:1509,138,0:0,0,22,24 +chrX 1032900 . A G 4976 . AC=3;AF=1.00;AN=3;AS_AltDP=116;AS_QD=31.18;DP=119;ExcessHet=0.0000;FS=0.000;MQ=59.70;QD=43.16;SOR=0.877;VarDP=116 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,64:64:99:.:.:2798,0:.:0,0,24,40 1|1:0,52:52:99:0|1:1032900_A_G:2208,156,0:1032900:0,0,29,23 +chrX 1032915 . T G 5195 . AC=3;AF=1.00;AN=3;AS_AltDP=122;AS_QD=28.44;DP=123;ExcessHet=0.0000;FS=0.000;MQ=59.71;QD=42.83;SOR=0.831;VarDP=122 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,68:68:99:.:.:2901,0:.:0,0,27,41 1|1:0,54:54:99:0|1:1032900_A_G:2324,163,0:1032900:0,0,30,24 +chrX 1032979 . G C 3982 . AC=2;AF=0.667;AN=3;AS_AltDP=94;AS_QD=34.00;BaseQRankSum=-0.179;DP=122;ExcessHet=0.0000;FS=0.863;MQ=59.76;MQRankSum=-0.782;QD=34.00;ReadPosRankSum=-0.917;SOR=0.560;VarDP=118 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,58:58:99:.:.:2583,0:.:0,0,23,35 0|1:24,36:60:99:0|1:1032979_G_C:1429,0,888:1032979:10,14,20,16 +chrX 1032984 . A G 4068 . AC=2;AF=0.667;AN=3;AS_AltDP=97;AS_QD=33.87;BaseQRankSum=-0.542;DP=124;ExcessHet=0.0000;FS=0.857;MQ=59.77;MQRankSum=-0.762;QD=33.87;ReadPosRankSum=-0.817;SOR=0.573;VarDP=121 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,59:59:99:.:.:2617,0:.:0,0,24,35 0|1:24,38:62:99:0|1:1032979_G_C:1481,0,882:1032979:10,14,20,18 +chrX 1033025 . A T 2520 . AC=2;AF=0.667;AN=3;AS_AltDP=87;AS_QD=22.37;BaseQRankSum=1.749;DP=124;ExcessHet=0.0000;FS=0.000;MQ=59.81;MQRankSum=-0.163;QD=22.37;ReadPosRankSum=0.322;SOR=0.728;VarDP=114 GT:AD:DP:GQ:PL:SB 1:1,52:53:99:1647,0:0,1,16,36 0/1:26,35:61:99:903,0,966:9,17,13,22 +chrX 1033029 . C T 647 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=10.92;BaseQRankSum=1.41;DP=119;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=10.92;ReadPosRankSum=-1.001;SOR=0.809;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:57:99:57:0,1583 0/1:35,27:62:99:.:677,0,1358:14,21,10,17 +chrX 1033183 . G A 3573 . AC=3;AF=1.00;AN=3;AS_AltDP=108;AS_QD=33.36;DP=113;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.36;SOR=0.936;VarDP=108 GT:AD:DP:GQ:PL:SB 1:0,51:51:99:1673,0:0,0,29,22 1/1:0,57:57:99:1930,171,0:0,0,31,26 +chrX 1033301 . C T 2660 . AC=2;AF=0.667;AN=3;AS_AltDP=88;AS_QD=23.60;BaseQRankSum=0.958;DP=115;ExcessHet=0.0000;FS=3.177;MQ=59.38;MQRankSum=0;QD=23.60;ReadPosRankSum=-2.139;SOR=1.116;VarDP=114 GT:AD:DP:GQ:PL:SB 1:0,60:60:99:1920,0:0,0,39,21 0/1:26,28:54:99:770,0,676:16,10,22,6 +chrX 1033364 . C T 1079 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=19.12;BaseQRankSum=-1.107;DP=120;ExcessHet=0.0000;FS=0.000;MQ=59.33;MQRankSum=-0.966;QD=19.12;ReadPosRankSum=-1.389;SOR=0.693;VarDP=58 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:59:99:59:.:.:0,1205 0|1:29,29:58:99:.:0|1:1033364_C_T:1109,0,1109:1033364:16,13,16,13 +chrX 1033365 . A G 1079 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=19.12;BaseQRankSum=-1.039;DP=119;ExcessHet=0.0000;FS=0.000;MQ=59.32;MQRankSum=-0.966;QD=19.12;ReadPosRankSum=-1.12;SOR=0.693;VarDP=58 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:59:99:59:.:.:0,1205 0|1:29,29:58:99:.:0|1:1033364_C_T:1109,0,1109:1033364:16,13,16,13 +chrX 1033493 . A G 1947 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=24.41;BaseQRankSum=0.222;DP=84;ExcessHet=0.0000;FS=3.375;MQ=57.03;MQRankSum=-3.267;QD=24.41;ReadPosRankSum=0.999;SOR=1.034;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,35:35:99:1376,0:0,0,13,22 0/1:23,23:46:99:601,0,822:12,11,11,12 +chrX 1033518 . T C 1910 . AC=2;AF=0.667;AN=3;AS_AltDP=50;AS_QD=24.56;BaseQRankSum=-0.641;DP=81;ExcessHet=0.0000;FS=1.923;MQ=56.01;MQRankSum=-3.964;QD=24.56;ReadPosRankSum=0.2;SOR=0.612;VarDP=79 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:1168,0:0,0,13,15 0/1:29,22:51:99:772,0,715:13,16,13,9 +chrX 1033564 . T C 725 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=16.06;BaseQRankSum=-2.864;DP=72;ExcessHet=0.0000;FS=19.319;MQ=52.17;MQRankSum=5.901;QD=16.06;ReadPosRankSum=2.948;SOR=0.035;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:25:99:25:0,720 0/1:18,29:47:99:.:755,0,609:16,2,15,14 +chrX 1033594 . A G 1692 . AC=2;AF=0.667;AN=3;AS_AltDP=42;AS_QD=23.27;BaseQRankSum=1.028;DP=76;ExcessHet=0.0000;FS=25.456;MQ=48.14;MQRankSum=-5.571;QD=23.27;ReadPosRankSum=1.629;SOR=3.258;VarDP=74 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,27:27:99:.:.:1204,0:.:0,0,22,5 0|1:32,15:47:99:0|1:1033594_A_G:518,0,1248:1033594:18,14,15,0 +chrX 1033602 . C T 1836 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=23.33;BaseQRankSum=1.678;DP=81;ExcessHet=0.0000;FS=23.416;MQ=48.30;MQRankSum=-5.065;QD=23.33;ReadPosRankSum=1.782;SOR=2.977;VarDP=80 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,30:30:99:.:.:1288,0:.:0,0,24,6 0|1:33,17:50:99:0|1:1033594_A_G:578,0,1253:1033594:18,15,16,1 +chrX 1033761 . A G 7292 . AC=2;AF=0.667;AN=3;AS_AltDP=259;AS_QD=26.63;BaseQRankSum=-2.567;DP=283;ExcessHet=0.0000;FS=5.039;MQ=57.86;MQRankSum=0.543;QD=26.63;ReadPosRankSum=0.116;SOR=0.418;VarDP=275 GT:AD:DP:GQ:PL:SB 1:0,166:166:99:4929,0:0,0,92,74 0/1:16,93:109:99:2393,0,195:6,10,41,52 +chrX 1033904 . G A 55 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=1.08;BaseQRankSum=0.937;DP=214;ExcessHet=0.0000;FS=33.075;MQ=57.00;MQRankSum=-6.726;QD=1.08;ReadPosRankSum=-1.192;SOR=3.418;VarDP=79 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:131:99:131:.:.:0,362 0|1:68,11:79:85:.:0|1:1033904_G_A:85,0,2284:1033904:45,23,1,10 +chrX 1033910 . T C 1068 . AC=1;AF=0.333;AN=3;AS_AltDP=40;AS_QD=14.26;BaseQRankSum=-0.329;DP=210;ExcessHet=0.0000;FS=14.464;MQ=56.96;MQRankSum=-4.086;QD=14.26;ReadPosRankSum=-1.393;SOR=0.311;VarDP=77 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:131:99:131:.:.:0,362 0|1:37,40:77:99:.:0|1:1033904_G_A:1098,0,961:1033904:27,10,19,21 +chrX 1034005 . A G 4054 . AC=3;AF=1.00;AN=3;AS_AltDP=133;AS_QD=29.17;BaseQRankSum=4.439;DP=152;ExcessHet=0.0000;FS=3.555;MQ=59.61;MQRankSum=8.833;QD=29.17;ReadPosRankSum=-0.388;SOR=0.295;VarDP=140 GT:AD:DP:GQ:PL:SB 1:6,57:63:99:1785,0:5,1,24,33 1/1:1,76:77:99:2299,204,0:0,1,41,35 +chrX 1034239 . T C 4039 . AC=3;AF=1.00;AN=3;AS_AltDP=126;AS_QD=31.79;BaseQRankSum=-0.733;DP=132;ExcessHet=0.0000;FS=7.070;MQ=60.00;MQRankSum=0;QD=31.79;ReadPosRankSum=-0.799;SOR=0.568;VarDP=128 GT:AD:DP:GQ:PL:SB 1:2,66:68:99:2074,0:0,2,38,28 1/1:0,60:60:99:1995,180,0:0,0,33,27 +chrX 1034344 . T A 5081 . AC=3;AF=1.00;AN=3;AS_AltDP=125;AS_QD=36.33;DP=127;ExcessHet=0.0000;FS=0.000;MQ=59.96;QD=40.89;SOR=0.709;VarDP=125 GT:AD:DP:GQ:PL:SB 1:0,64:64:99:2729,0:0,0,30,34 1/1:0,61:61:99:2382,183,0:0,0,32,29 +chrX 1034359 . T C 3226 . AC=2;AF=0.667;AN=3;AS_AltDP=88;AS_QD=28.81;BaseQRankSum=-3.592;DP=114;ExcessHet=0.0000;FS=0.000;MQ=59.96;MQRankSum=0;QD=28.81;ReadPosRankSum=-0.668;SOR=0.622;VarDP=113 GT:AD:DP:GQ:PL:SB 1:0,59:59:99:2555,0:0,0,29,30 0/1:25,29:54:99:701,0,717:13,12,15,14 +chrX 1034415 . CTTTTTTT CTTTTT,C 1849.97 . AC=3,0;AF=1.00,0.00;AN=3;AS_AltDP=55,0;AS_QD=32.02,0.00;BaseQRankSum=-0.432;DP=113;ExcessHet=0.0000;FS=9.059;MQ=59.38;MQRankSum=-0.218;QD=32.02;ReadPosRankSum=-0.5;SOR=1.447;VarDP=59 GT:AD:DP:GQ:PL:SB 1:1,27,0:28:99:824,0,826:1,0,8,19 1/1:3,28,0:31:40:1065,40,0,1094,138,1929:2,1,10,18 +chrX 1034422 . T *,C 378 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=0,15;AS_QD=0.00,10.20;BaseQRankSum=0.04;DP=105;ExcessHet=0.0000;FS=2.784;MQ=59.69;MQRankSum=-1.239;QD=10.20;ReadPosRankSum=1.691;SOR=0.363;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:51:99:51:0,1018,1018 0/2:25,0,15:40:99:.:408,477,1851,0,833,832:9,16,7,8 +chrX 1034587 . G GTTT 470.97 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=14.17;BaseQRankSum=-2.084;DP=94;ExcessHet=0.0000;FS=14.764;MQ=60.00;MQRankSum=0;QD=14.17;ReadPosRankSum=-1.162;SOR=2.970;VarDP=36 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:51:99:51:.:.:0,1291 0|1:22,14:36:99:.:0|1:1034587_G_GTTT:510,0,860:1034587:12,10,2,12 +chrX 1034592 . G T 507 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=14.13;BaseQRankSum=-1.197;DP=91;ExcessHet=0.0000;FS=17.088;MQ=60.00;MQRankSum=0;QD=14.13;ReadPosRankSum=-0.584;SOR=3.119;VarDP=38 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:51:99:51:.:.:0,1291 0|1:23,15:38:99:.:0|1:1034587_G_GTTT:537,0,887:1034587:12,11,2,13 +chrX 1034597 . G GTT,T 3510 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=75,14;AS_QD=34.29,30.05;DP=99;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=39.78;SOR=0.761;VarDP=89 GT:AD:DP:GQ:PL:SB 1:0,56,0:56:99:2219,0,2219:0,0,31,25 1/2:0,19,14:33:99:1321,573,512,746,0,828:0,0,12,21 +chrX 1034872 . TG T 464.97 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=12.00;BaseQRankSum=-0.699;DP=104;ExcessHet=0.0000;FS=1.250;MQ=60.00;MQRankSum=0;QD=12.00;ReadPosRankSum=0.2;SOR=0.976;VarDP=42 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:34:60:.:.:0,34 0|1:28,14:42:99:.:0|1:1034872_TG_T:504,0,1128:1034872:14,14,8,6 +chrX 1034876 . T C 474 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=12.00;BaseQRankSum=-0.715;DP=102;ExcessHet=0.0000;FS=1.250;MQ=60.00;MQRankSum=0;QD=12.00;ReadPosRankSum=0.193;SOR=0.976;VarDP=42 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:34:60:.:.:0,34 0|1:28,14:42:99:.:0|1:1034872_TG_T:504,0,1128:1034872:14,14,8,6 +chrX 1035084 . G A 1766 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=32.07;DP=120;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.07;SOR=0.765;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:34:60:0,34 1/1:0,56:56:99:.:1796,168,0:0,0,29,27 +chrX 1035276 . G C 1186 . AC=2;AF=0.667;AN=3;AS_AltDP=68;AS_QD=10.39;BaseQRankSum=-1.316;DP=119;ExcessHet=0.0000;FS=0.710;MQ=60.00;MQRankSum=0;QD=10.39;ReadPosRankSum=0.868;SOR=0.831;VarDP=117 GT:AD:DP:GQ:PL:SB 1:23,36:59:99:402,0:8,15,15,21 0/1:26,32:58:99:814,0,660:13,13,12,20 +chrX 1035311 . TCC T 4652.97 . AC=3;AF=1.00;AN=3;AS_AltDP=110;AS_QD=28.66;DP=116;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=42.65;SOR=0.976;VarDP=110 GT:AD:DP:GQ:PL:SB 1:0,63:63:99:2674,0:0,0,27,36 1/1:0,47:47:99:2018,142,0:0,0,21,26 +chrX 1035318 . G A 505 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=10.70;BaseQRankSum=2.158;DP=100;ExcessHet=0.0000;FS=10.731;MQ=60.00;MQRankSum=0;QD=10.70;ReadPosRankSum=-0.238;SOR=0.859;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:49:99:49:0,1340 0/1:30,20:50:99:.:535,0,802:10,20,12,8 +chrX 1035364 . G A 556 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=12.74;BaseQRankSum=-0.751;DP=99;ExcessHet=0.0000;FS=6.369;MQ=60.00;MQRankSum=0;QD=12.74;ReadPosRankSum=-0.132;SOR=0.333;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:49:99:49:0,1340 0/1:23,23:46:99:.:586,0,622:7,16,12,11 +chrX 1035399 . G A 657 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=14.62;BaseQRankSum=-1.717;DP=98;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.62;ReadPosRankSum=-0.463;SOR=0.546;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:49:99:49:0,1340 0/1:20,27:47:99:.:687,0,748:8,12,12,15 +chrX 1035407 . C T 1850 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=21.12;BaseQRankSum=2.389;DP=94;ExcessHet=0.0000;FS=0.861;MQ=60.00;MQRankSum=0;QD=21.12;ReadPosRankSum=-0.172;SOR=0.605;VarDP=89 GT:AD:DP:GQ:PL:SB 1:0,40:40:99:1329,0:0,0,22,18 0/1:28,21:49:99:551,0,1071:13,15,9,12 +chrX 1035570 . A G 583 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=16.57;BaseQRankSum=-1.21;DP=97;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=16.57;ReadPosRankSum=-2.15;SOR=0.569;VarDP=37 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:55:99:55:0,1171 0/1:13,24:37:99:.:613,0,322:7,6,12,12 +chrX 1035580 . G C 3330 . AC=3;AF=1.00;AN=3;AS_AltDP=94;AS_QD=28.50;DP=96;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=35.74;SOR=0.780;VarDP=94 GT:AD:DP:GQ:PL:SB 1:0,55:55:99:1827,0:0,0,26,29 1/1:0,39:39:99:1533,117,0:0,0,19,20 +chrX 1035624 . G A 1599 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=21.16;BaseQRankSum=2.047;DP=78;ExcessHet=0.0000;FS=0.974;MQ=60.00;MQRankSum=0;QD=21.16;ReadPosRankSum=0.91;SOR=0.518;VarDP=77 GT:AD:DP:GQ:PL:SB 1:1,39:40:99:1200,0:1,0,20,19 0/1:20,17:37:99:429,0,501:11,9,9,8 +chrX 1035637 . G GA 1706.97 . AC=3;AF=1.00;AN=3;AS_AltDP=74;AS_QD=22.97;BaseQRankSum=-0.393;DP=102;ExcessHet=0.0000;FS=0.000;MQ=59.94;MQRankSum=0;QD=22.97;ReadPosRankSum=-0.211;SOR=0.804;VarDP=76 GT:AD:DP:GQ:PL:SB 1:1,40:41:99:956,0:0,1,24,16 1/1:1,34:35:77:790,77,0:1,0,15,19 +chrX 1036076 . G A 3192 . AC=3;AF=1.00;AN=3;AS_AltDP=96;AS_QD=33.56;DP=101;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.56;SOR=0.823;VarDP=96 GT:AD:DP:GQ:PL:SB 1:0,49:49:99:1628,0:0,0,24,25 1/1:0,47:47:99:1594,141,0:0,0,21,26 +chrX 1036406 . AAAAC A 644.97 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=12.91;BaseQRankSum=-0.395;DP=117;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=12.91;ReadPosRankSum=0.659;SOR=0.760;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:99:56:0,223 0/1:34,19:53:99:.:684,0,1362:19,15,11,8 +chrX 1036731 . G A 142 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=4.53;BaseQRankSum=2.475;DP=93;ExcessHet=0.0000;FS=5.750;MQ=58.85;MQRankSum=0.961;QD=4.53;ReadPosRankSum=0.555;SOR=1.897;VarDP=38 GT:AD:DP:GQ:MIN_DP:PL:SB 1:18,20:38:99:.:172,0:9,6,16,4 0/0:.:42:27:37:0,27,936 +chrX 1036734 . A G 2955 . AC=3;AF=1.00;AN=3;AS_AltDP=90;AS_QD=33.17;DP=108;ExcessHet=0.0000;FS=0.000;MQ=58.92;QD=33.17;SOR=1.192;VarDP=90 GT:AD:DP:GQ:PL:SB 1:0,37:37:99:1367,0:0,0,23,10 1/1:0,53:53:99:1618,158,0:0,0,29,24 +chrX 1036854 . G A 678 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=14.75;BaseQRankSum=1.642;DP=90;ExcessHet=0.0000;FS=4.156;MQ=60.00;MQRankSum=0;QD=14.75;ReadPosRankSum=0.404;SOR=1.133;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:43:51:41:0,51 0/1:22,26:48:99:.:708,0,530:10,12,16,10 +chrX 1036990 . CT C 35.97 . AC=1;AF=0.333;AN=3;AS_AltDP=8;AS_QD=2.59;BaseQRankSum=-1.524;DP=79;ExcessHet=0.0000;FS=0.000;MQ=57.70;MQRankSum=-2.159;QD=2.59;ReadPosRankSum=0.586;SOR=0.714;VarDP=29 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:43:51:41:0,51 0/1:21,8:29:75:.:75,0,776:6,15,2,6 +chrX 1036995 . T TC 546.97 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=16.74;BaseQRankSum=1.09;DP=78;ExcessHet=0.0000;FS=5.490;MQ=57.64;MQRankSum=1.783;QD=16.74;ReadPosRankSum=-0.634;SOR=1.890;VarDP=35 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:43:51:41:0,51 0/1:15,20:35:99:.:586,0,419:7,8,5,15 +chrX 1037028 . G C 981 . AC=2;AF=0.667;AN=3;AS_AltDP=32;AS_QD=31.59;DP=76;ExcessHet=0.0000;FS=0.000;MQ=55.70;QD=31.59;SOR=1.911;VarDP=32 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:43:51:41:0,51 1/1:0,32:32:94:.:1011,94,0:0,0,9,23 +chrX 1037077 . T TC 389.97 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=11.59;BaseQRankSum=-1.577;DP=81;ExcessHet=0.0000;FS=0.000;MQ=55.07;MQRankSum=-2.311;QD=11.59;ReadPosRankSum=0.285;SOR=0.752;VarDP=37 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:43:51:41:0,51 0/1:25,12:37:99:.:429,0,1002:9,16,4,8 +chrX 1037083 . A C,T 3180 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=57,25;AS_QD=25.31,31.63;DP=85;ExcessHet=0.0000;FS=0.000;MQ=55.77;QD=39.15;SOR=0.961;VarDP=82 GT:AD:DP:GQ:PL:SB 1:0,43,0:43:99:1651,0,1651:0,0,23,20 1/2:0,14,25:39:99:1559,1023,996,536,0,465:0,0,13,26 +chrX 1037099 . T C 877 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=23.26;BaseQRankSum=2.639;DP=88;ExcessHet=0.0000;FS=4.987;MQ=53.67;MQRankSum=2.731;QD=23.26;ReadPosRankSum=0.514;SOR=0.215;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:48:99:48:0,1285 0/1:16,23:39:99:.:907,0,484:4,12,10,13 +chrX 1037149 . C A 4085 . AC=3;AF=1.00;AN=3;AS_AltDP=95;AS_QD=35.32;DP=98;ExcessHet=0.0000;FS=0.000;MQ=56.59;QD=43.32;SOR=0.714;VarDP=95 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,52:52:99:.:.:2298,0:.:0,0,27,25 1|1:0,43:43:99:0|1:1037149_C_A:1817,129,0:1037149:0,0,21,22 +chrX 1037154 . G A 2407 . AC=1;AF=0.333;AN=3;AS_AltDP=56;AS_QD=32.70;DP=98;ExcessHet=0.0000;FS=0.000;MQ=58.77;QD=43.52;SOR=0.841;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,56:56:99:.:2437,0:0,0,30,26 0/0:.:41:99:41:0,111,1300 +chrX 1037159 . T A 1762 . AC=2;AF=0.667;AN=3;AS_AltDP=42;AS_QD=29.96;DP=100;ExcessHet=0.0000;FS=0.000;MQ=54.36;QD=42.67;SOR=0.693;VarDP=42 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:57:99:57:.:.:0,1673 1|1:0,42:42:99:.:0|1:1037149_C_A:1792,126,0:1037149:0,0,21,21 +chrX 1037236 . G A 1871 . AC=1;AF=0.333;AN=3;AS_AltDP=58;AS_QD=32.78;DP=103;ExcessHet=0.0000;FS=0.000;MQ=59.68;QD=32.78;SOR=1.493;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,58:58:99:.:1901,0:0,0,38,20 0/0:.:45:99:45:0,106,1245 +chrX 1037245 . G A 544 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=11.71;BaseQRankSum=1.679;DP=111;ExcessHet=0.0000;FS=4.322;MQ=59.67;MQRankSum=0.907;QD=11.71;ReadPosRankSum=1.961;SOR=0.270;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:99:60:0,1224 0/1:28,21:49:99:.:574,0,735:20,8,12,9 +chrX 1037855 . TTATATATATATATATA TTA,TTATA,TTATATA,T 1155.97 . AC=1,0,0,1;AF=0.333,0.00,0.00,0.333;AN=3;AS_AltDP=20,4,2,13;AS_QD=27.15,35.74,4.78,23.10;BaseQRankSum=-0.381;DP=84;ExcessHet=0.0000;FS=10.069;MQ=59.18;MQRankSum=2.764;QD=25.98;ReadPosRankSum=2.17;SOR=0.352;VarDP=46 GT:AD:DP:GQ:PL:SB 1:1,20,4,2,0:27:99:733,0,345,690,753:1,0,13,13 0/4:6,0,0,0,13:19:99:462,480,691,480,691,691,480,691,691,691,0,211,211,211,170:5,1,5,8 +chrX 1038068 . T C 3239 . AC=3;AF=1.00;AN=3;AS_AltDP=104;AS_QD=31.43;DP=112;ExcessHet=0.0000;FS=0.000;MQ=59.86;QD=31.43;SOR=1.146;VarDP=104 GT:AD:DP:GQ:PL:SB 1:0,59:59:99:1815,0:0,0,35,24 1/1:0,45:45:99:1454,135,0:0,0,27,18 +chrX 1038217 . C T 525 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=12.33;BaseQRankSum=0.794;DP=118;ExcessHet=0.0000;FS=8.562;MQ=60.00;MQRankSum=0;QD=12.33;ReadPosRankSum=0.239;SOR=1.033;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:69:99:69:0,1800 0/1:24,21:45:99:.:555,0,627:9,15,13,8 +chrX 1038396 . G A 2009 . AC=1;AF=0.333;AN=3;AS_AltDP=62;AS_QD=32.89;DP=121;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.89;SOR=1.329;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,62:62:99:.:2039,0:0,0,23,39 0/0:.:57:71:57:0,71,1142 +chrX 1038468 . C A 2140 . AC=1;AF=0.333;AN=3;AS_AltDP=69;AS_QD=31.45;DP=127;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.45;SOR=0.781;VarDP=69 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,69:69:99:.:2170,0:0,0,33,36 0/0:.:57:71:57:0,71,1142 +chrX 1039957 . C A 1836 . AC=2;AF=0.667;AN=3;AS_AltDP=68;AS_QD=18.12;BaseQRankSum=3.029;DP=106;ExcessHet=0.0000;FS=1.685;MQ=60.00;MQRankSum=0;QD=18.12;ReadPosRankSum=-1.651;SOR=0.612;VarDP=103 GT:AD:DP:GQ:PL:SB 1:2,40:42:99:1248,0:1,1,19,21 0/1:33,28:61:99:618,0,842:18,15,14,14 +chrX 1040003 . A G 3463 . AC=3;AF=1.00;AN=3;AS_AltDP=119;AS_QD=29.35;DP=125;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=29.35;SOR=1.104;VarDP=119 GT:AD:DP:GQ:PL:SB 1:0,60:60:99:1796,0:0,0,23,37 1/1:0,59:59:99:1697,174,0:0,0,26,33 +chrX 1040202 . C A 867 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=12.81;BaseQRankSum=-0.027;DP=147;ExcessHet=0.0000;FS=6.897;MQ=60.00;MQRankSum=0;QD=12.81;ReadPosRankSum=0.635;SOR=0.223;VarDP=70 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:75:99:75:0,1800 0/1:36,34:70:99:.:897,0,952:27,9,20,14 +chrX 1040715 . C T 3354 . AC=2;AF=0.667;AN=3;AS_AltDP=108;AS_QD=24.88;BaseQRankSum=2.022;DP=138;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=24.88;ReadPosRankSum=-0.891;SOR=0.769;VarDP=136 GT:AD:DP:GQ:PL:SB 1:0,68:68:99:2258,0:0,0,31,37 0/1:28,40:68:99:1126,0,654:14,14,21,19 +chrX 1040742 . C T 3014 . AC=2;AF=0.667;AN=3;AS_AltDP=95;AS_QD=24.75;BaseQRankSum=4.223;DP=129;ExcessHet=0.0000;FS=2.792;MQ=60.00;MQRankSum=0;QD=24.75;ReadPosRankSum=0.404;SOR=0.742;VarDP=123 GT:AD:DP:GQ:PL:SB 1:0,58:58:99:1964,0:0,0,31,27 0/1:28,37:65:99:1080,0,647:13,15,20,17 +chrX 1040758 . T C 2906 . AC=2;AF=0.667;AN=3;AS_AltDP=94;AS_QD=23.87;BaseQRankSum=1.722;DP=127;ExcessHet=0.0000;FS=1.729;MQ=60.00;MQRankSum=0;QD=23.87;ReadPosRankSum=1.247;SOR=0.822;VarDP=123 GT:AD:DP:GQ:PL:SB 1:0,56:56:99:1871,0:0,0,31,25 0/1:29,38:67:99:1065,0,725:14,15,20,18 +chrX 1041497 . G A 56 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=1.37;BaseQRankSum=2.929;DP=129;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=1.37;ReadPosRankSum=-0.64;SOR=0.646;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 1:32,31:63:86:.:86,0:12,20,12,19 0/0:.:64:99:64:0,108,1484 +chrX 1041636 . TTATC T 803.97 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=17.20;BaseQRankSum=0;DP=118;ExcessHet=0.0000;FS=2.434;MQ=60.00;MQRankSum=0;QD=17.20;ReadPosRankSum=0.757;SOR=0.721;VarDP=49 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:64:99:64:.:.:0,1707 0|1:27,22:49:99:.:0|1:1041636_TTATC_T:843,0,1067:1041636:12,15,12,10 +chrX 1041652 . TTGTC T 800.97 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=16.80;BaseQRankSum=0;DP=115;ExcessHet=0.0000;FS=2.447;MQ=60.00;MQRankSum=0;QD=16.80;ReadPosRankSum=0.473;SOR=0.684;VarDP=50 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:64:99:64:.:.:0,1707 0|1:28,22:50:99:.:0|1:1041636_TTATC_T:840,0,1109:1041636:12,16,12,10 +chrX 1041708 . C CT 672.97 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=15.48;BaseQRankSum=-0.349;DP=111;ExcessHet=0.0000;FS=4.324;MQ=60.00;MQRankSum=0;QD=15.48;ReadPosRankSum=-0.609;SOR=0.822;VarDP=46 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:64:99:64:.:.:0,1707 0|1:27,19:46:99:.:0|1:1041708_C_CT:712,0,1077:1041708:11,16,11,8 +chrX 1041709 . ATCTG A 2280.97 . AC=1;AF=0.333;AN=3;AS_AltDP=52;AS_QD=26.13;DP=104;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.62;SOR=0.770;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,52:52:99:.:2320,0:0,0,27,25 0/0:.:46:99:46:0,114,1710 +chrX 1041711 . C *,CATA 798.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=0,22;AS_QD=0.00,17.10;BaseQRankSum=-0.913;DP=107;ExcessHet=0.0000;FS=5.732;MQ=60.00;MQRankSum=0;QD=17.10;ReadPosRankSum=-0.48;SOR=0.626;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,52,0:52:99:.:.:2320,0,2320:.:0,0,27,25 0|2:27,0,22:49:99:0|1:1041708_C_CT:838,919,2053,0,1134,1068:1041708:11,16,13,9 +chrX 1041713 . G *,A 771 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=0,21;AS_QD=0.00,16.69;BaseQRankSum=-2.381;DP=106;ExcessHet=0.0000;FS=4.344;MQ=60.00;MQRankSum=0;QD=16.69;ReadPosRankSum=-0.904;SOR=0.590;VarDP=48 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,52,0:52:99:.:.:2320,0,2320:.:0,0,27,25 0|2:27,0,21:48:99:0|1:1041708_C_CT:801,882,2016,0,1134,1071:1041708:11,16,12,9 +chrX 1041735 . GTATC GTATCTATC,G 1753.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=24,19;AS_QD=29.87,31.95;DP=100;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=41.70;SOR=0.739;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:53:99:53:0,1152,1152 1/2:0,24,19:43:99:.:1793,786,714,1007,0,1118:0,0,22,21 +chrX 1041753 . G GTCTA 680.97 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=16.00;BaseQRankSum=-2.333;DP=98;ExcessHet=0.0000;FS=2.597;MQ=60.00;MQRankSum=0;QD=16.00;ReadPosRankSum=0.913;SOR=0.928;VarDP=45 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:53:99:53:.:.:0,1152 0|1:26,19:45:99:.:0|1:1041708_C_CT:720,0,1024:1041708:12,14,11,8 +chrX 1041761 . G GTCTA 2013.97 . AC=2;AF=0.667;AN=3;AS_AltDP=46;AS_QD=29.89;DP=99;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.63;SOR=0.780;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:53:99:53:0,1152 1/1:0,46:46:99:.:2053,138,0:0,0,22,24 +chrX 1041826 . C G 592 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=14.14;BaseQRankSum=-0.549;DP=98;ExcessHet=0.0000;FS=2.614;MQ=60.00;MQRankSum=0;QD=14.14;ReadPosRankSum=1.386;SOR=1.016;VarDP=44 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:53:99:53:.:.:0,1152 0|1:27,17:44:99:.:0|1:1041826_C_G:622,0,1052:1041826:13,14,10,7 +chrX 1041838 . GTATC G 611.97 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=14.15;BaseQRankSum=0.855;DP=99;ExcessHet=0.0000;FS=2.588;MQ=60.00;MQRankSum=0;QD=14.15;ReadPosRankSum=1.542;SOR=1.179;VarDP=46 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:53:99:53:.:.:0,1152 0|1:28,18:46:99:.:0|1:1041826_C_G:651,0,1091:1041826:14,14,11,7 +chrX 1041871 . T TATCA 2669.97 . AC=2;AF=0.667;AN=3;AS_AltDP=65;AS_QD=31.14;BaseQRankSum=0.194;DP=95;ExcessHet=0.0000;FS=2.057;MQ=60.00;MQRankSum=0;QD=31.14;ReadPosRankSum=0.88;SOR=0.433;VarDP=87 GT:AD:DP:GQ:PL:SB 1:0,39:39:99:1726,0:0,0,19,20 0/1:22,26:48:99:983,0,815:13,9,14,12 +chrX 1041921 . A G 388 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=13.48;BaseQRankSum=-1.094;DP=99;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.48;ReadPosRankSum=-0.921;SOR=0.569;VarDP=31 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,1171 0/1:13,18:31:99:.:418,0,472:7,6,9,9 +chrX 1041922 . TATCA T 362.97 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=12.97;BaseQRankSum=-1.128;DP=103;ExcessHet=0.0000;FS=1.451;MQ=60.00;MQRankSum=0;QD=12.97;ReadPosRankSum=2.106;SOR=0.721;VarDP=31 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,1171 0/1:20,11:31:99:.:402,0,777:9,11,6,5 +chrX 1042231 . ATCTG A 587.97 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=13.63;BaseQRankSum=-1.776;DP=115;ExcessHet=0.0000;FS=1.165;MQ=60.00;MQRankSum=0;QD=13.63;ReadPosRankSum=0.609;SOR=0.497;VarDP=46 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:65:99:65:.:.:0,1171 0|1:29,17:46:99:.:0|1:1042231_ATCTG_A:627,0,1156:1042231:12,17,8,9 +chrX 1042251 . ATCTC A 669.97 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=15.76;BaseQRankSum=-1.43;DP=112;ExcessHet=0.0000;FS=1.154;MQ=60.00;MQRankSum=0;QD=15.76;ReadPosRankSum=-0.966;SOR=0.674;VarDP=45 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:65:99:65:.:.:0,1171 0|1:26,19:45:99:.:0|1:1042231_ATCTG_A:709,0,1034:1042231:12,14,10,9 +chrX 1042255 . C G,* 3763 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=97,19;AS_QD=31.75,0.00;DP=121;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.70;SOR=0.877;VarDP=116 GT:AD:DP:GQ:PL:SB 1:0,72,0:72:99:2322,0,2322:0,0,41,31 1/2:0,25,19:44:99:1471,787,713,752,0,992:0,0,22,22 +chrX 1042308 . C CATCT 650.97 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=17.25;BaseQRankSum=-0.078;DP=113;ExcessHet=0.0000;FS=2.817;MQ=60.00;MQRankSum=0;QD=17.25;ReadPosRankSum=-0.694;SOR=0.307;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:70:99:70:0,402 0/1:22,18:40:99:.:690,0,818:14,8,9,9 +chrX 1042373 . A ATCTC 1169.97 . AC=1;AF=0.333;AN=3;AS_AltDP=40;AS_QD=20.84;BaseQRankSum=-0.646;DP=113;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=20.84;ReadPosRankSum=0.05;SOR=1.426;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 1:18,40:58:99:.:1209,0:1,1,8,15 0/0:.:49:99:49:0,99,1373 +chrX 1042389 . G A 788 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=20.45;BaseQRankSum=-0.904;DP=106;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=20.45;ReadPosRankSum=-1.014;SOR=0.804;VarDP=40 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:99:63:.:.:0,1157 0|1:18,22:40:99:.:0|1:1042389_G_A:818,0,690:1042389:11,7,14,8 +chrX 1042407 . C CTGTT 734.97 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=18.43;BaseQRankSum=0.684;DP=105;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=18.43;ReadPosRankSum=-1.172;SOR=0.551;VarDP=42 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:99:63:.:.:0,1157 0|1:22,20:42:99:.:0|1:1042389_G_A:774,0,864:1042389:13,9,11,9 +chrX 1042416 . C CATCT 834.97 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=19.42;BaseQRankSum=0.896;DP=108;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=19.42;ReadPosRankSum=-1.84;SOR=0.602;VarDP=45 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:99:63:.:.:0,1157 0|1:22,23:45:99:.:0|1:1042389_G_A:874,0,855:1042389:13,9,13,10 +chrX 1042440 . GTCCA G,GTCCATCCA 1653.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=23,19;AS_QD=31.43,29.47;DP=109;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=40.31;SOR=1.259;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,1157,1157 1/2:0,23,19:42:99:.:1693,780,802,917,0,860:0,0,26,16 +chrX 1042496 . A G 660 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=12.78;BaseQRankSum=0.825;DP=119;ExcessHet=0.0000;FS=3.855;MQ=60.00;MQRankSum=0;QD=12.78;ReadPosRankSum=0.225;SOR=1.267;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,1157 0/1:27,27:54:99:.:690,0,678:13,14,17,10 +chrX 1042580 . G A 808 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=14.45;BaseQRankSum=0.51;DP=123;ExcessHet=0.0000;FS=1.010;MQ=60.00;MQRankSum=0;QD=14.45;ReadPosRankSum=0.374;SOR=0.976;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,1157 0/1:28,30:58:99:.:838,0,759:14,14,13,17 +chrX 1042970 . C CTTTAT 627.97 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=17.10;BaseQRankSum=0.963;DP=110;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=17.10;ReadPosRankSum=0.776;SOR=0.507;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,1157 0/1:21,18:39:99:.:667,0,818:6,15,6,12 +chrX 1043057 . C T 278 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=8.32;BaseQRankSum=1.082;DP=84;ExcessHet=0.0000;FS=5.845;MQ=59.54;MQRankSum=0;QD=8.32;ReadPosRankSum=-0.392;SOR=0.156;VarDP=37 GT:AD:DP:GQ:MIN_DP:PL:SB 1:14,23:37:99:.:308,0:2,12,8,15 0/0:.:46:60:46:0,60,1251 +chrX 1043155 . T C 1517 . AC=2;AF=0.667;AN=3;AS_AltDP=48;AS_QD=32.23;DP=100;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.23;SOR=1.179;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:51:99:51:0,918 1/1:0,48:48:99:.:1547,144,0:0,0,19,29 +chrX 1043587 . A G 4463 . AC=3;AF=1.00;AN=3;AS_AltDP=104;AS_QD=29.61;DP=107;ExcessHet=0.0000;FS=0.000;MQ=59.07;QD=43.20;SOR=1.374;VarDP=104 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,51:51:99:.:.:2190,0:.:0,0,35,16 1|1:0,53:53:99:0|1:1043587_A_G:2303,159,0:1043587:0,0,31,22 +chrX 1043608 . GATCGAGACCATCCTGGCTAACATGGTGAA G 4423.97 . AC=3;AF=1.00;AN=3;AS_AltDP=101;AS_QD=32.87;DP=104;ExcessHet=0.0000;FS=0.000;MQ=59.05;QD=44.19;SOR=1.368;VarDP=101 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,50:50:99:.:.:2201,0:.:0,0,33,17 1|1:0,51:51:99:0|1:1043587_A_G:2262,154,0:1043587:0,0,31,20 +chrX 1043760 . A C 484 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=12.24;BaseQRankSum=-0.957;DP=96;ExcessHet=0.0000;FS=0.000;MQ=59.43;MQRankSum=-0.592;QD=12.24;ReadPosRankSum=-0.209;SOR=0.709;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:54:99:54:0,578 0/1:22,20:42:99:.:514,0,813:10,12,9,11 +chrX 1043771 . C T 976 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=10.59;BaseQRankSum=2.06;DP=97;ExcessHet=0.0000;FS=3.910;MQ=59.71;MQRankSum=1.491;QD=10.59;ReadPosRankSum=1.265;SOR=1.100;VarDP=95 GT:AD:DP:GQ:PL:SB 1:18,38:56:99:473,0:9,9,14,24 0/1:20,19:39:99:533,0,755:9,11,8,11 +chrX 1043814 . CAAA C,AAAA,CA 1639 . AC=1,0,1;AF=0.333,0.00,0.333;AN=3;AS_AltDP=33,2,25;AS_QD=16.89,0.00,15.74;BaseQRankSum=-0.577;DP=107;ExcessHet=0.0000;FS=5.221;MQ=59.85;MQRankSum=0;QD=20.35;ReadPosRankSum=-0.169;SOR=1.425;VarDP=82 GT:AD:DP:GQ:PL:SB 1:7,33,2,0:42:99:929,0,1208,1338:4,3,7,28 0/3:15,0,0,25:40:99:740,785,1219,785,1219,1219,0,434,434,358:6,9,12,13 +chrX 1043852 . G C 1962 . AC=2;AF=0.667;AN=3;AS_AltDP=68;AS_QD=20.75;BaseQRankSum=0.318;DP=102;ExcessHet=0.0000;FS=5.845;MQ=60.00;MQRankSum=0;QD=20.75;ReadPosRankSum=-0.495;SOR=1.104;VarDP=96 GT:AD:DP:GQ:PL:SB 1:0,47:47:99:1492,0:0,0,17,30 0/1:28,21:49:99:500,0,698:15,13,10,11 +chrX 1044097 . T C 3541 . AC=3;AF=1.00;AN=3;AS_AltDP=110;AS_QD=32.46;DP=117;ExcessHet=0.0000;FS=0.000;MQ=59.62;QD=32.46;SOR=0.888;VarDP=110 GT:AD:DP:GQ:PL:SB 1:0,51:51:99:1665,0:0,0,29,22 1/1:0,59:59:99:1906,177,0:0,0,31,28 +chrX 1044246 . T C 107 . AC=1;AF=0.333;AN=3;AS_AltDP=40;AS_QD=1.90;BaseQRankSum=-1.899;DP=130;ExcessHet=0.0000;FS=3.214;MQ=59.44;MQRankSum=1.313;QD=1.90;ReadPosRankSum=0.397;SOR=0.737;VarDP=72 GT:AD:DP:GQ:MIN_DP:PL:SB 1:32,40:72:99:.:137,0:18,14,18,22 0/0:.:57:99:57:0,108,1525 +chrX 1044258 . A G 3572 . AC=2;AF=0.667;AN=3;AS_AltDP=97;AS_QD=28.36;BaseQRankSum=-0.474;DP=130;ExcessHet=0.0000;FS=3.933;MQ=59.02;MQRankSum=3.927;QD=28.36;ReadPosRankSum=-0.772;SOR=0.659;VarDP=127 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,73:74:99:.:.:2764,0:.:1,0,36,37 0|1:29,24:53:99:0|1:1044258_A_G:838,0,1124:1044258:16,13,9,15 +chrX 1044277 . T C 855 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=15.53;BaseQRankSum=-2.905;DP=132;ExcessHet=0.0000;FS=9.545;MQ=58.22;MQRankSum=-0.135;QD=15.53;ReadPosRankSum=-0.289;SOR=1.331;VarDP=57 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:72:99:72:.:.:0,1800 0|1:31,26:57:99:.:0|1:1044258_A_G:885,0,1182:1044258:18,13,9,17 +chrX 1044368 . CT C 1044.97 . AC=3;AF=1.00;AN=3;AS_AltDP=60;AS_QD=13.22;BaseQRankSum=1.912;DP=115;ExcessHet=0.0000;FS=6.655;MQ=59.70;MQRankSum=1.651;QD=13.22;ReadPosRankSum=-0.612;SOR=0.250;VarDP=82 GT:AD:DP:GQ:PL:SB 1:21,27:48:99:215,0:14,7,15,12 1/1:1,33:34:95:869,95,0:1,0,16,17 +chrX 1044397 . G A,C 872 . AC=2,0;AF=0.667,0.00;AN=3;AS_AltDP=30,3;AS_QD=30.07,10.00;DP=96;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=27.33;SOR=0.752;VarDP=33 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:50:62:0,50,50 1/1:0,30,3:33:68:.:902,89,0,880,68,872:0,0,17,16 +chrX 1044452 . G A 569 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=14.26;BaseQRankSum=0.511;DP=105;ExcessHet=0.0000;FS=19.240;MQ=59.62;MQRankSum=-0.861;QD=14.26;ReadPosRankSum=0.619;SOR=1.926;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:50:62:0,50 0/1:19,23:42:99:.:599,0,445:13,6,6,17 +chrX 1044511 . A G 717 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=13.58;BaseQRankSum=-2.27;DP=119;ExcessHet=0.0000;FS=18.431;MQ=59.92;MQRankSum=0;QD=13.58;ReadPosRankSum=-0.964;SOR=1.084;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:50:62:0,50 0/1:25,30:55:99:.:747,0,684:7,18,19,11 +chrX 1045394 . AAC A 882.97 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=18.44;BaseQRankSum=-1.429;DP=117;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=18.44;ReadPosRankSum=-1.931;SOR=0.716;VarDP=50 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:50:62:.:.:0,50 0|1:26,24:50:99:.:0|1:1045394_AAC_A:922,0,1019:1045394:11,15,10,14 +chrX 1045398 . G T 892 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=18.44;BaseQRankSum=0.336;DP=120;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=18.44;ReadPosRankSum=-1.622;SOR=0.716;VarDP=50 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:69:99:69:.:.:0,278 0|1:26,24:50:99:.:0|1:1045394_AAC_A:922,0,1019:1045394:11,15,10,14 +chrX 1046212 . C T 674 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=6.12;BaseQRankSum=1.624;DP=117;ExcessHet=0.0000;FS=10.334;MQ=59.89;MQRankSum=0;QD=6.12;ReadPosRankSum=0.02;SOR=1.166;VarDP=115 GT:AD:DP:GQ:PL:SB 1:31,34:65:99:145,0:13,18,21,13 0/1:29,21:50:99:559,0,746:14,15,13,8 +chrX 1046456 . T C 799 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=6.28;BaseQRankSum=-0.574;DP=137;ExcessHet=0.0000;FS=3.094;MQ=60.00;MQRankSum=0;QD=6.28;ReadPosRankSum=-1.006;SOR=0.911;VarDP=132 GT:AD:DP:GQ:PL:SB 1:29,31:60:49:49,0:12,17,14,17 0/1:40,32:72:99:780,0,1060:23,17,14,18 +chrX 1046850 . A G 589 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=14.07;BaseQRankSum=-1.98;DP=104;ExcessHet=0.0000;FS=4.635;MQ=60.00;MQRankSum=0;QD=14.07;ReadPosRankSum=-2.444;SOR=1.609;VarDP=44 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:53:36:52:.:.:0,36 0|1:25,19:44:99:.:0|1:1046850_A_G:619,0,962:1046850:11,14,5,14 +chrX 1046871 . T A,TA 480 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=2,14;AS_QD=0.00,14.17;BaseQRankSum=-1.168;DP=98;ExcessHet=0.0000;FS=2.909;MQ=59.61;MQRankSum=-1.119;QD=13.42;ReadPosRankSum=-0.873;SOR=0.729;VarDP=38 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:53:36:52:0,36,36 0/2:22,2,14:38:99:.:510,546,1167,0,651,995:13,9,7,9 +chrX 1046872 . C A 480 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=12.75;BaseQRankSum=0.491;DP=99;ExcessHet=0.0000;FS=0.000;MQ=59.62;MQRankSum=-1.31;QD=12.75;ReadPosRankSum=-1.154;SOR=0.560;VarDP=40 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:53:36:52:.:.:0,36 0|1:26,14:40:99:.:0|1:1046850_A_G:510,0,1029:1046850:14,12,7,7 +chrX 1046913 . AGAAG A 255.97 . AC=1;AF=0.333;AN=3;AS_AltDP=9;AS_QD=8.94;BaseQRankSum=0.466;DP=98;ExcessHet=0.0000;FS=4.159;MQ=59.24;MQRankSum=-2.296;QD=8.94;ReadPosRankSum=0.734;SOR=1.898;VarDP=33 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:53:36:52:.:.:0,36 0|1:24,9:33:99:.:0|1:1046913_AGAAG_A:295,0,968:1046913:16,8,8,1 +chrX 1046922 . GAAAGAA G 395.97 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=12.43;BaseQRankSum=-0.59;DP=87;ExcessHet=0.0000;FS=4.301;MQ=59.17;MQRankSum=-2.092;QD=12.43;ReadPosRankSum=0.825;SOR=2.030;VarDP=35 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:45:99:45:.:.:0,180 0|1:23,12:35:99:.:0|1:1046913_AGAAG_A:435,0,929:1046913:13,7,8,1 +chrX 1046932 . A G 405 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=12.43;BaseQRankSum=0.646;DP=88;ExcessHet=0.0000;FS=4.301;MQ=59.19;MQRankSum=-2.092;QD=12.43;ReadPosRankSum=0.613;SOR=2.030;VarDP=35 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:45:99:45:.:.:0,180 0|1:23,12:35:99:.:0|1:1046913_AGAAG_A:435,0,929:1046913:13,7,8,1 +chrX 1046982 . G A 348 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=10.80;BaseQRankSum=0.164;DP=88;ExcessHet=0.0000;FS=0.000;MQ=58.43;MQRankSum=-3.02;QD=10.80;ReadPosRankSum=0.65;SOR=0.434;VarDP=35 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:45:99:45:0,180 0/1:20,15:35:99:.:378,0,546:18,2,13,2 +chrX 1047073 . GAAGGAAGGAAGAAAGAAAGA GAAGA,G 543.97 . AC=1,2;AF=0.333,0.667;AN=3;AS_AltDP=4,9;AS_QD=30.18,31.99;DP=31;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.85;SOR=3.767;VarDP=13 GT:AD:DP:GQ:PL:SB 1:0,4,0:4:99:179,0,179:0,0,4,0 2/2:0,0,9:9:28:404,404,404,28,28,0:0,0,8,1 +chrX 1047316 . T C 642 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=13.71;BaseQRankSum=-0.608;DP=118;ExcessHet=0.0000;FS=10.731;MQ=60.00;MQRankSum=0;QD=13.71;ReadPosRankSum=0.05;SOR=1.852;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:90:64:0,90 0/1:24,25:49:99:.:672,0,661:11,13,18,7 +chrX 1047558 . T A 850 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=16.92;BaseQRankSum=-0.92;DP=120;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=16.92;ReadPosRankSum=0.399;SOR=0.616;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:90:64:0,90 0/1:19,33:52:99:.:880,0,464:7,12,13,20 +chrX 1047696 . T TTCTC,TTCTCTCTCTCTCTCTCTC,TTCTCTC 1231.97 . AC=1,0,2;AF=0.333,0.00,0.667;AN=3;AS_AltDP=11,6,16;AS_QD=34.14,25.40,28.06;BaseQRankSum=-0.253;DP=84;ExcessHet=0.0000;FS=0.000;MQ=58.73;MQRankSum=-0.307;QD=37.38;ReadPosRankSum=-0.952;SOR=0.368;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,11,6,0:17:99:794,0,226,631:0,0,9,8 3/3:1,0,0,16:17:24:477,481,504,481,504,504,24,47,47,0:1,0,10,6 +chrX 1047872 . GA G 979.97 . AC=2;AF=0.667;AN=3;AS_AltDP=67;AS_QD=8.56;BaseQRankSum=1.604;DP=133;ExcessHet=0.0000;FS=2.376;MQ=60.00;MQRankSum=0;QD=8.56;ReadPosRankSum=1.704;SOR=0.490;VarDP=119 GT:AD:DP:GQ:PL:SB 1:26,40:66:99:406,0:14,12,22,18 0/1:26,27:53:99:613,0,572:17,9,14,13 +chrX 1048300 . A T 1014 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=10.55;BaseQRankSum=-1.842;DP=110;ExcessHet=0.0000;FS=2.702;MQ=59.96;MQRankSum=0;QD=10.55;ReadPosRankSum=-0.141;SOR=0.631;VarDP=99 GT:AD:DP:GQ:PL:SB 1:20,32:52:99:272,0:10,10,13,19 0/1:18,29:47:99:772,0,475:7,11,19,10 +chrX 1048390 . C G 837 . AC=2;AF=0.667;AN=3;AS_AltDP=48;AS_QD=10.97;BaseQRankSum=0.017;DP=94;ExcessHet=0.0000;FS=0.871;MQ=59.54;MQRankSum=0;QD=10.97;ReadPosRankSum=1.035;SOR=0.843;VarDP=79 GT:AD:DP:GQ:PL:SB 1:18,24:42:99:218,0:9,9,8,16 0/1:13,24:37:99:649,0,296:5,8,12,12 +chrX 1048503 . AAAGAAAGAAAGAAAGAAAGAAAGG A 233.97 . AC=1;AF=0.333;AN=3;AS_AltDP=7;AS_QD=27.30;BaseQRankSum=-1.054;DP=54;ExcessHet=0.0000;FS=0.000;MQ=53.70;MQRankSum=1.834;QD=27.30;ReadPosRankSum=1.687;SOR=0.569;VarDP=10 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:26:45:26:0,45 0/1:3,7:10:54:.:273,0,54:3,0,6,1 +chrX 1048565 . AGG A 248.97 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=24.00;DP=37;ExcessHet=0.0000;FS=0.000;MQ=55.19;QD=24.00;SOR=1.445;VarDP=12 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,12:12:99:.:288,0:0,0,8,4 0/0:.:22:0:22:0,0,416 +chrX 1048568 . AAGGGGAAGGGAAGGGAAGGAAGGAAGGAAGGACGGACGGAAGGAAGGGAGAGAAAGAAAGAAAGAAAGAAGGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAG *,A 195.97 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=0,12;AS_QD=0.00,16.79;DP=43;ExcessHet=0.0000;FS=0.000;MQ=52.68;MQRankSum=1.153;QD=16.79;SOR=1.445;VarDP=14 GT:AD:DP:GQ:MIN_DP:PL:SB 2:2,0,12:14:99:.:235,462,0:1,1,8,4 0/0:.:23:20:23:0,20,600,20,600,600 +chrX 1048838 . C A 572 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=19.42;BaseQRankSum=2.878;DP=87;ExcessHet=0.0000;FS=5.884;MQ=59.61;MQRankSum=0;QD=19.42;ReadPosRankSum=-0.764;SOR=0.493;VarDP=31 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:49:99:49:0,471 0/1:11,20:31:99:.:602,0,249:8,3,9,11 +chrX 1048967 . T C 668 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=14.24;BaseQRankSum=1.665;DP=127;ExcessHet=0.0000;FS=8.955;MQ=60.00;MQRankSum=0;QD=14.24;ReadPosRankSum=0.79;SOR=2.194;VarDP=49 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:74:19:74:.:.:0,19 0|1:30,19:49:99:.:0|1:1048967_T_C:698,0,1203:1048967:14,16,4,15 +chrX 1048968 . C T 668 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=14.24;BaseQRankSum=1.665;DP=127;ExcessHet=0.0000;FS=8.955;MQ=60.00;MQRankSum=0;QD=14.24;ReadPosRankSum=0.77;SOR=2.194;VarDP=49 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:75:99:75:.:.:0,114 0|1:30,19:49:99:.:0|1:1048967_T_C:698,0,1203:1048967:14,16,4,15 +chrX 1049241 . C T 843 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=7.34;BaseQRankSum=1.562;DP=120;ExcessHet=0.0000;FS=1.469;MQ=60.00;MQRankSum=0;QD=7.34;ReadPosRankSum=0.231;SOR=0.562;VarDP=119 GT:AD:DP:GQ:PL:SB 1:36,36:72:96:96,0:16,20,15,21 0/1:20,27:47:99:777,0,524:6,14,12,15 +chrX 1049385 . A C 680 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=14.20;BaseQRankSum=1.235;DP=85;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.20;ReadPosRankSum=-0.69;SOR=0.846;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:52:33:33:0,33 0/1:24,26:50:99:.:710,0,594:12,12,12,14 +chrX 1050443 . GGAGGTTGCAGTGAGCT G 986.97 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=21.38;BaseQRankSum=0.156;DP=85;ExcessHet=0.0000;FS=0.000;MQ=59.62;MQRankSum=1.129;QD=21.38;ReadPosRankSum=-0.61;SOR=0.669;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:52:33:33:0,33 0/1:22,26:48:99:.:1026,0,822:12,10,14,12 +chrX 1050510 . C CA 316.97 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=11.48;BaseQRankSum=0.311;DP=108;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=11.48;ReadPosRankSum=0.079;SOR=0.722;VarDP=31 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:70:37:69:0,37 0/1:14,17:31:99:.:356,0,277:9,5,11,6 +chrX 1050900 . G GT 978.97 . AC=2;AF=0.667;AN=3;AS_AltDP=40;AS_QD=25.45;DP=122;ExcessHet=0.0000;FS=0.000;MQ=59.80;QD=25.45;SOR=1.292;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:70:37:69:0,37 1/1:0,40:40:99:.:1018,120,0:0,0,15,25 +chrX 1051047 . C A 493 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=12.45;BaseQRankSum=0.214;DP=112;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=12.45;ReadPosRankSum=1.109;SOR=0.709;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:70:37:69:0,37 0/1:22,20:42:99:.:523,0,599:12,10,11,9 +chrX 1051324 . G A 3462 . AC=2;AF=0.667;AN=3;AS_AltDP=112;AS_QD=24.77;BaseQRankSum=-0.514;DP=148;ExcessHet=0.0000;FS=1.690;MQ=60.00;MQRankSum=0;QD=24.77;ReadPosRankSum=1.295;SOR=0.560;VarDP=141 GT:AD:DP:GQ:PL:SB 1:0,81:81:99:2690,0:0,0,40,41 0/1:29,31:60:99:802,0,767:16,13,15,16 +chrX 1051665 . A AAAG 1240.97 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=22.86;BaseQRankSum=-1.027;DP=125;ExcessHet=0.0000;FS=2.353;MQ=60.00;MQRankSum=0;QD=22.86;ReadPosRankSum=1.008;SOR=0.369;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:11:62:0,11 0/1:23,33:56:99:.:1280,0,844:8,15,15,18 +chrX 1052561 . C T 2127 . AC=2;AF=0.667;AN=3;AS_AltDP=73;AS_QD=22.24;BaseQRankSum=-0.357;DP=121;ExcessHet=0.0000;FS=1.925;MQ=56.07;MQRankSum=-3.252;QD=22.24;ReadPosRankSum=0.396;SOR=0.963;VarDP=97 GT:AD:DP:GQ:PL:SB 1:0,46:46:99:1471,0:0,0,23,23 0/1:24,27:51:99:686,0,602:12,12,18,9 +chrX 1052617 . C CAAAGGCTGCAATGTGAATGAATTTTTGGAAATAGCCCTAATGCTCATCTATGAAGGAGTGATAAACACAGCATCCTTTATCCATGCAATGGAATATTATGCAGTCTAGAAAAGGAATAAGGCTCTGACAAAAGACTGCAATATGTATGAATTTTGGAAACAGCCCTACTGCCCATCTATAAAGGAATGGATAAACACAGCATAGTTCATCTATACAATGCAATATTATAATGGAATATTATGCAGCCTGGAACAGGAACAAGGCTCTGAG 1141.97 . AC=1;AF=0.333;AN=3;AS_AltDP=45;AS_QD=12.70;BaseQRankSum=-0.435;DP=160;ExcessHet=0.0000;FS=0.000;MQ=58.43;MQRankSum=0.816;QD=12.70;ReadPosRankSum=-4.294;SOR=0.666;VarDP=93 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:67:99:67:.:.:0,500 0|1:48,45:93:99:.:0|1:1052617_C_CAAAGGCTGCAATGTGAATGAATTTTTGGAAATAGCCCTAATGCTCATCTATGAAGGAGTGATAAACACAGCATCCTTTATCCATGCAATGGAATATTATGCAGTCTAGAAAAGGAATAAGGCTCTGACAAAAGACTGCAATATGTATGAATTTTGGAAACAGCCCTACTGCCCATCTATAAAGGAATGGATAAACACAGCATAGTTCATCTATACAATGCAATATTATAATGGAATATTATGCAGCCTGGAACAGGAACAAGGCTCTGAG:1181,0,676:1052617:21,27,20,25 +chrX 1052675 . G T 580 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=9.84;BaseQRankSum=-0.938;DP=129;ExcessHet=0.0000;FS=11.299;MQ=59.49;MQRankSum=-2.477;QD=9.84;ReadPosRankSum=0.795;SOR=0.595;VarDP=62 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:67:99:67:.:.:0,500 0|1:37,25:62:99:.:0|1:1052617_C_CAAAGGCTGCAATGTGAATGAATTTTTGGAAATAGCCCTAATGCTCATCTATGAAGGAGTGATAAACACAGCATCCTTTATCCATGCAATGGAATATTATGCAGTCTAGAAAAGGAATAAGGCTCTGACAAAAGACTGCAATATGTATGAATTTTGGAAACAGCCCTACTGCCCATCTATAAAGGAATGGATAAACACAGCATAGTTCATCTATACAATGCAATATTATAATGGAATATTATGCAGCCTGGAACAGGAACAAGGCTCTGAG:610,0,1111:1052617:12,25,14,11 +chrX 1052757 . C A 642 . AC=2;AF=0.667;AN=3;AS_AltDP=76;AS_QD=5.33;BaseQRankSum=-2.874;DP=128;ExcessHet=0.0000;FS=0.670;MQ=60.00;MQRankSum=0;QD=5.33;ReadPosRankSum=1.49;SOR=0.619;VarDP=126 GT:AD:DP:GQ:PL:SB 1:27,40:67:99:297,0:18,9,20,20 0/1:23,36:59:99:375,0,636:8,15,18,18 +chrX 1052840 . C T 137 . AC=1;AF=0.333;AN=3;AS_AltDP=8;AS_QD=3.27;BaseQRankSum=0.023;DP=119;ExcessHet=0.0000;FS=3.546;MQ=60.00;MQRankSum=0;QD=3.27;ReadPosRankSum=0.397;SOR=1.024;VarDP=51 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:67:99:67:.:.:0,1668 0|1:43,8:51:99:.:0|1:1052840_C_T:167,0,1743:1052840:25,18,3,5 +chrX 1052845 . C T 131 . AC=1;AF=0.333;AN=3;AS_AltDP=8;AS_QD=3.04;BaseQRankSum=-0.145;DP=121;ExcessHet=0.0000;FS=3.526;MQ=59.60;MQRankSum=0;QD=3.04;ReadPosRankSum=0.55;SOR=1.029;VarDP=53 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:67:99:67:.:.:0,1668 0|1:45,8:53:99:.:0|1:1052840_C_T:161,0,1827:1052840:26,19,3,5 +chrX 1053706 . C T 515 . AC=2;AF=0.667;AN=3;AS_AltDP=49;AS_QD=4.87;BaseQRankSum=1.662;DP=116;ExcessHet=0.0000;FS=3.502;MQ=59.75;MQRankSum=0.027;QD=4.87;ReadPosRankSum=0.854;SOR=0.649;VarDP=112 GT:AD:DP:GQ:PL:SB 1:26,27:53:15:15,0:11,15,14,13 0/1:37,22:59:99:530,0,865:17,20,12,10 +chrX 1054168 . T G 771 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=13.13;BaseQRankSum=2.912;DP=122;ExcessHet=0.0000;FS=0.983;MQ=60.00;MQRankSum=0;QD=13.13;ReadPosRankSum=-0.246;SOR=0.922;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,173 0/1:32,29:61:99:.:801,0,790:17,15,17,12 +chrX 1054720 . T A 844 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=13.87;BaseQRankSum=-0.699;DP=124;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.87;ReadPosRankSum=-0.503;SOR=0.719;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,173 0/1:30,33:63:99:.:874,0,784:12,18,13,20 +chrX 1054829 . G A 990 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=17.29;BaseQRankSum=1.537;DP=121;ExcessHet=0.0000;FS=5.279;MQ=60.00;MQRankSum=0;QD=17.29;ReadPosRankSum=0.054;SOR=0.919;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,173 0/1:23,36:59:99:.:1020,0,533:13,10,15,21 +chrX 1055093 . G A 521 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=9.34;BaseQRankSum=-1.223;DP=119;ExcessHet=0.0000;FS=1.026;MQ=60.00;MQRankSum=0;QD=9.34;ReadPosRankSum=-0.303;SOR=0.906;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,173 0/1:36,23:59:99:.:551,0,1013:16,20,9,14 +chrX 1055164 . TTTTA T 759.97 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=14.02;BaseQRankSum=-1.552;DP=126;ExcessHet=0.0000;FS=5.610;MQ=60.00;MQRankSum=0;QD=14.02;ReadPosRankSum=-0.262;SOR=1.524;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,173 0/1:35,22:57:99:.:799,0,1403:17,18,7,15 +chrX 1056171 . CA C 647.97 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=18.08;BaseQRankSum=1.5;DP=107;ExcessHet=0.0000;FS=0.000;MQ=58.27;MQRankSum=-1.099;QD=18.08;ReadPosRankSum=0.059;SOR=0.782;VarDP=38 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,173 0/1:15,23:38:99:.:687,0,395:8,6,6,4 +chrX 1056304 . C T 483 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=14.25;BaseQRankSum=0.26;DP=116;ExcessHet=0.0000;FS=3.009;MQ=58.43;MQRankSum=0;QD=14.25;ReadPosRankSum=1.607;SOR=0.479;VarDP=36 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,173 0/1:16,20:36:99:.:513,0,387:10,6,9,10 +chrX 1056557 . A AT 386.97 . AC=1;AF=0.500;AN=2;AS_AltDP=21;AS_QD=11.51;BaseQRankSum=-0.846;DP=69;ExcessHet=0.0000;FS=4.743;MQ=60.00;MQRankSum=0;QD=11.51;ReadPosRankSum=0.69;SOR=1.508;VarDP=37 GT:AD:DP:GQ:MIN_DP:PL:SB .:.:27:1:27:0,1 0/1:16,21:37:99:.:426,0,310:8,8,14,7 +chrX 1056700 . C T 711 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=16.11;BaseQRankSum=1.244;DP=100;ExcessHet=0.0000;FS=4.112;MQ=59.04;MQRankSum=0.336;QD=16.11;ReadPosRankSum=-0.066;SOR=1.043;VarDP=46 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:54:99:54:.:.:0,997 0|1:26,20:46:99:.:0|1:1056700_C_T:741,0,1032:1056700:12,14,12,8 +chrX 1056704 . T C 676 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=15.35;BaseQRankSum=0.468;DP=103;ExcessHet=0.0000;FS=6.115;MQ=58.31;MQRankSum=0.261;QD=15.35;ReadPosRankSum=0.753;SOR=1.194;VarDP=46 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:54:99:54:.:.:0,997 0|1:27,19:46:99:.:0|1:1056700_C_T:706,0,1056:1056700:12,15,12,7 +chrX 1056802 . C T 2841 . AC=3;AF=1.00;AN=3;AS_AltDP=106;AS_QD=22.97;BaseQRankSum=2.567;DP=129;ExcessHet=0.0000;FS=4.918;MQ=59.02;MQRankSum=2.018;QD=22.97;ReadPosRankSum=0.606;SOR=0.375;VarDP=125 GT:AD:DP:GQ:PL:SB 1:19,37:56:99:697,0:12,7,16,21 1/1:0,69:69:99:2174,207,0:0,0,36,33 +chrX 1057102 . G A 415 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=6.85;BaseQRankSum=1.228;DP=123;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=6.85;ReadPosRankSum=0.166;SOR=0.624;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:57:94:57:0,94 0/1:46,19:65:99:.:445,0,1291:25,21,10,9 +chrX 1057295 . C G 347 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=7.11;BaseQRankSum=-0.159;DP=112;ExcessHet=0.0000;FS=4.346;MQ=59.95;MQRankSum=-1.48;QD=7.11;ReadPosRankSum=-0.107;SOR=0.273;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:57:94:57:0,94 0/1:37,16:53:99:.:377,0,1083:13,24,8,8 +chrX 1057420 . AACAC A,AACACAC 414.97 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=1,17;AS_QD=0.00,14.19;BaseQRankSum=-1.528;DP=111;ExcessHet=0.0000;FS=1.376;MQ=60.00;MQRankSum=0;QD=13.76;ReadPosRankSum=0.646;SOR=0.399;VarDP=33 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:57:94:57:0,94,94 0/2:15,1,17:33:99:.:454,526,1153,0,481,693:9,6,9,9 +chrX 1057442 . C T 360 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=10.83;BaseQRankSum=0.278;DP=104;ExcessHet=0.0000;FS=1.357;MQ=60.00;MQRankSum=0;QD=10.83;ReadPosRankSum=0.674;SOR=1.095;VarDP=36 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:57:94:57:.:.:0,94 0|1:22,14:36:99:.:0|1:1057442_C_T:390,0,756:1057442:12,10,9,5 +chrX 1057444 . CAT C 350.97 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=10.83;BaseQRankSum=0.655;DP=103;ExcessHet=0.0000;FS=1.357;MQ=60.00;MQRankSum=0;QD=10.83;ReadPosRankSum=0.974;SOR=1.095;VarDP=36 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:57:94:57:.:.:0,94 0|1:22,14:36:99:.:0|1:1057442_C_T:390,0,756:1057442:12,10,9,5 +chrX 1057446 . T *,C,TAC 1287 . AC=1,1,0;AF=0.333,0.333,0.00;AN=3;AS_AltDP=14,21,0;AS_QD=0.00,33.59,33.00;BaseQRankSum=2.053;DP=103;ExcessHet=0.0000;FS=3.802;MQ=60.00;MQRankSum=0;QD=36.58;ReadPosRankSum=-1.486;SOR=0.876;VarDP=36 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:57:94:57:0,94,94,94 1/2:1,14,21,0:36:99:.:1317,740,712,578,0,775,1124,643,747,1380:0,1,21,14 +chrX 1057501 . G T 1261 . AC=2;AF=0.667;AN=3;AS_AltDP=40;AS_QD=31.49;BaseQRankSum=2.512;DP=99;ExcessHet=0.0000;FS=3.340;MQ=60.00;MQRankSum=0;QD=31.49;ReadPosRankSum=-1.311;SOR=0.540;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:57:94:57:0,94 1/1:1,40:41:99:.:1291,113,0:0,1,22,18 +chrX 1057562 . T TCTCAGCTCACTGCAACCTCTGCTTCCCCAATTCAAATGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCAC 5976.97 . AC=3;AF=1.00;AN=3;AS_AltDP=147;AS_QD=30.03;BaseQRankSum=0.853;DP=180;ExcessHet=0.0000;FS=3.507;MQ=55.73;MQRankSum=-0.611;QD=40.65;ReadPosRankSum=-1.552;SOR=0.605;VarDP=148 GT:AD:DP:GQ:PL:SB 1:1,69:70:99:2753,0:0,1,36,33 1/1:0,78:78:99:3263,221,0:0,0,46,32 +chrX 1058087 . A G 1988 . AC=2;AF=0.667;AN=3;AS_AltDP=46;AS_QD=29.37;DP=115;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.87;SOR=0.976;VarDP=46 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:65:99:65:.:.:0,100 1|1:0,46:46:99:.:0|1:1058087_A_G:2018,138,0:1058087:0,0,26,20 +chrX 1058088 . A G 1988 . AC=2;AF=0.667;AN=3;AS_AltDP=46;AS_QD=28.93;DP=114;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.87;SOR=0.976;VarDP=46 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:65:99:65:.:.:0,100 1|1:0,46:46:99:.:0|1:1058087_A_G:2018,138,0:1058087:0,0,26,20 +chrX 1058136 . C T 1321 . AC=2;AF=0.667;AN=3;AS_AltDP=65;AS_QD=10.23;BaseQRankSum=2.621;DP=137;ExcessHet=0.0000;FS=6.913;MQ=60.00;MQRankSum=0;QD=10.23;ReadPosRankSum=1.629;SOR=0.316;VarDP=132 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:31,35:66:99:.:.:200,0:.:22,9,23,12 0|1:36,30:66:99:0|1:1058136_C_T:1151,0,1401:1058136:25,11,15,15 +chrX 1058137 . G A 1321 . AC=2;AF=0.667;AN=3;AS_AltDP=65;AS_QD=10.23;BaseQRankSum=2.239;DP=137;ExcessHet=0.0000;FS=6.913;MQ=60.00;MQRankSum=0;QD=10.23;ReadPosRankSum=1.615;SOR=0.316;VarDP=132 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:31,35:66:99:.:.:200,0:.:22,9,23,12 0|1:36,30:66:99:0|1:1058136_C_T:1151,0,1401:1058136:25,11,15,15 +chrX 1058141 . T C 1279 . AC=2;AF=0.667;AN=3;AS_AltDP=64;AS_QD=9.99;BaseQRankSum=1.844;DP=136;ExcessHet=0.0000;FS=6.778;MQ=60.00;MQRankSum=0;QD=9.99;ReadPosRankSum=1.801;SOR=0.339;VarDP=131 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:31,35:66:99:.:.:200,0:.:21,10,23,12 0|1:36,29:65:99:0|1:1058136_C_T:1109,0,1404:1058136:25,11,14,15 +chrX 1058255 . C T 982 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=16.87;BaseQRankSum=1.274;DP=132;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=16.87;ReadPosRankSum=-1.298;SOR=0.693;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:71:99:71:0,104 0/1:24,36:60:99:.:1012,0,554:12,12,18,18 +chrX 1058303 . C G 771 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=6.85;BaseQRankSum=-0.253;DP=120;ExcessHet=0.0000;FS=1.471;MQ=59.96;MQRankSum=1.102;QD=6.85;ReadPosRankSum=-0.801;SOR=0.542;VarDP=117 GT:AD:DP:GQ:PL:SB 1:28,32:60:99:109,0:12,16,15,17 0/1:31,26:57:99:692,0,866:15,16,14,12 +chrX 1058749 . C T 978 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=17.38;BaseQRankSum=2.785;DP=122;ExcessHet=0.0000;FS=3.796;MQ=60.00;MQRankSum=0;QD=17.38;ReadPosRankSum=0.008;SOR=0.302;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,1565 0/1:23,35:58:99:.:1008,0,531:15,8,18,17 +chrX 1058970 . C T 3226 . AC=2;AF=0.667;AN=3;AS_AltDP=105;AS_QD=24.12;BaseQRankSum=-0.682;DP=137;ExcessHet=0.0000;FS=0.769;MQ=60.00;MQRankSum=0;QD=24.12;ReadPosRankSum=0.393;SOR=0.592;VarDP=135 GT:AD:DP:GQ:PL:SB 1:0,69:69:99:2317,0:0,0,38,31 0/1:30,36:66:99:939,0,766:16,14,15,21 +chrX 1059047 . T C 2692 . AC=2;AF=0.667;AN=3;AS_AltDP=92;AS_QD=21.43;BaseQRankSum=2.778;DP=130;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=21.43;ReadPosRankSum=0.466;SOR=0.636;VarDP=127 GT:AD:DP:GQ:PL:SB 1:2,59:61:99:1865,0:1,1,27,32 0/1:33,33:66:99:857,0,909:14,19,14,19 +chrX 1059130 . AT A 1977.97 . AC=2;AF=0.667;AN=3;AS_AltDP=71;AS_QD=20.58;BaseQRankSum=0.114;DP=113;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=20.58;ReadPosRankSum=1.584;SOR=0.734;VarDP=98 GT:AD:DP:GQ:PL:SB 1:0,55:55:99:1678,0:0,0,30,25 0/1:27,16:43:99:339,0,689:15,12,10,6 +chrX 1059245 . C G 2626 . AC=2;AF=0.667;AN=3;AS_AltDP=87;AS_QD=23.93;BaseQRankSum=1.057;DP=114;ExcessHet=0.0000;FS=6.164;MQ=60.00;MQRankSum=0;QD=23.93;ReadPosRankSum=1.014;SOR=0.260;VarDP=111 GT:AD:DP:GQ:PL:SB 1:0,67:67:99:2112,0:0,0,39,28 0/1:24,20:44:99:544,0,622:17,7,9,11 +chrX 1059510 . C T 3061 . AC=2;AF=0.667;AN=3;AS_AltDP=99;AS_QD=24.53;BaseQRankSum=1.686;DP=128;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=24.53;ReadPosRankSum=0.445;SOR=0.704;VarDP=126 GT:AD:DP:GQ:PL:SB 1:0,73:73:99:2357,0:0,0,31,42 0/1:27,26:53:99:734,0,729:12,15,13,13 +chrX 1059715 . A G 2741 . AC=2;AF=0.667;AN=3;AS_AltDP=88;AS_QD=24.52;BaseQRankSum=3.83;DP=117;ExcessHet=0.0000;FS=7.583;MQ=60.00;MQRankSum=0;QD=24.52;ReadPosRankSum=-0.053;SOR=0.781;VarDP=113 GT:AD:DP:GQ:PL:SB 1:0,53:53:99:1737,0:0,0,29,24 0/1:25,35:60:99:1034,0,598:10,15,21,14 +chrX 1059917 . T G 2935 . AC=2;AF=0.667;AN=3;AS_AltDP=94;AS_QD=25.13;BaseQRankSum=1.392;DP=119;ExcessHet=0.0000;FS=3.005;MQ=60.00;MQRankSum=0;QD=25.13;ReadPosRankSum=-0.742;SOR=0.430;VarDP=118 GT:AD:DP:GQ:PL:SB 1:0,60:60:99:2009,0:0,0,28,32 0/1:24,34:58:99:956,0,575:14,10,19,15 +chrX 1060070 . C T 733 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=10.45;BaseQRankSum=-0.14;DP=132;ExcessHet=0.0000;FS=3.248;MQ=60.00;MQRankSum=0;QD=10.45;ReadPosRankSum=-0.292;SOR=0.368;VarDP=73 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:57:99:57:0,1443 0/1:43,30:73:99:.:763,0,1204:17,26,15,15 +chrX 1060234 . C T 602 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=13.74;BaseQRankSum=0.075;DP=104;ExcessHet=0.0000;FS=2.597;MQ=60.00;MQRankSum=0;QD=13.74;ReadPosRankSum=0.791;SOR=0.316;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:57:99:57:0,1443 0/1:23,23:46:99:.:632,0,616:15,8,12,11 +chrX 1060278 . T C 787 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=14.33;BaseQRankSum=0.945;DP=115;ExcessHet=0.0000;FS=2.245;MQ=60.00;MQRankSum=0;QD=14.33;ReadPosRankSum=-0.463;SOR=0.409;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:57:99:57:0,1443 0/1:28,29:57:99:.:817,0,747:17,11,15,14 +chrX 1060379 . G A 3635 . AC=2;AF=0.667;AN=3;AS_AltDP=89;AS_QD=29.56;BaseQRankSum=1.85;DP=127;ExcessHet=0.0000;FS=1.618;MQ=60.00;MQRankSum=0;QD=29.56;ReadPosRankSum=-1.413;SOR=0.543;VarDP=124 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,59:59:99:.:.:2583,0:.:0,0,34,25 0|1:35,30:65:99:0|1:1060379_G_A:1082,0,1359:1060379:22,13,18,12 +chrX 1060396 . C T 3702 . AC=2;AF=0.667;AN=3;AS_AltDP=92;AS_QD=28.27;BaseQRankSum=1.446;DP=135;ExcessHet=0.0000;FS=0.730;MQ=60.00;MQRankSum=0;QD=28.27;ReadPosRankSum=-0.216;SOR=0.588;VarDP=132 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,61:61:99:.:.:2643,0:.:0,0,38,23 0|1:40,31:71:99:0|1:1060379_G_A:1089,0,1586:1060379:26,14,19,12 +chrX 1060420 . T G 1502 . AC=1;AF=0.333;AN=3;AS_AltDP=39;AS_QD=21.89;BaseQRankSum=-0.132;DP=139;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=21.89;ReadPosRankSum=-0.068;SOR=0.611;VarDP=70 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:68:99:68:.:.:0,1800 0|1:31,39:70:99:.:0|1:1060420_T_G:1532,0,1184:1060420:19,12,23,16 +chrX 1060422 . T C 1508 . AC=1;AF=0.333;AN=3;AS_AltDP=39;AS_QD=22.62;BaseQRankSum=-1.17;DP=139;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=22.62;ReadPosRankSum=-0.31;SOR=0.713;VarDP=68 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:68:99:68:.:.:0,1800 0|1:29,39:68:99:.:0|1:1060420_T_G:1538,0,1100:1060420:17,12,23,16 +chrX 1060467 . G A 835 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=12.91;BaseQRankSum=0.264;DP=137;ExcessHet=0.0000;FS=3.312;MQ=60.00;MQRankSum=0;QD=12.91;ReadPosRankSum=0.483;SOR=1.048;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:99:68:0,1800 0/1:33,34:67:99:.:865,0,836:16,17,20,14 +chrX 1060573 . G A 743 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=10.59;BaseQRankSum=1.154;DP=143;ExcessHet=0.0000;FS=1.953;MQ=60.00;MQRankSum=0;QD=10.59;ReadPosRankSum=0.925;SOR=0.718;VarDP=73 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:99:68:0,1800 0/1:43,30:73:99:.:773,0,1140:20,23,16,14 +chrX 1060624 . A G 701 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=9.49;BaseQRankSum=-1.524;DP=146;ExcessHet=0.0000;FS=0.893;MQ=60.00;MQRankSum=0;QD=9.49;ReadPosRankSum=-0.805;SOR=0.883;VarDP=77 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:99:68:0,1800 0/1:47,30:77:99:.:731,0,1342:26,21,18,12 +chrX 1060773 . A G 4429 . AC=3;AF=1.00;AN=3;AS_AltDP=139;AS_QD=32.08;DP=142;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.08;SOR=0.965;VarDP=139 GT:AD:DP:GQ:PL:SB 1:0,74:74:99:2360,0:0,0,34,40 1/1:0,65:65:99:2099,195,0:0,0,27,38 +chrX 1061125 . T C 4302 . AC=3;AF=1.00;AN=3;AS_AltDP=133;AS_QD=32.57;DP=139;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.57;SOR=1.016;VarDP=133 GT:AD:DP:GQ:PL:SB 1:0,82:82:99:2639,0:0,0,47,35 1/1:0,51:51:99:1693,153,0:0,0,29,22 +chrX 1061237 . CT C 2750.97 . AC=3;AF=1.00;AN=3;AS_AltDP=90;AS_QD=31.00;DP=107;ExcessHet=0.0000;FS=0.000;MQ=59.94;QD=31.00;SOR=0.832;VarDP=90 GT:AD:DP:GQ:PL:SB 1:0,49:49:99:1524,0:0,0,23,26 1/1:0,41:41:99:1266,123,0:0,0,19,22 +chrX 1061359 . T C 3929 . AC=3;AF=1.00;AN=3;AS_AltDP=122;AS_QD=32.45;DP=124;ExcessHet=0.0000;FS=0.000;MQ=59.27;QD=32.45;SOR=0.945;VarDP=122 GT:AD:DP:GQ:PL:SB 1:0,67:67:99:2193,0:0,0,28,39 1/1:0,55:55:99:1766,165,0:0,0,26,29 +chrX 1061591 . G A 839 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=17.04;BaseQRankSum=-0.859;DP=115;ExcessHet=0.0000;FS=1.152;MQ=59.67;MQRankSum=-0.73;QD=17.04;ReadPosRankSum=0.322;SOR=0.502;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,258 0/1:19,32:51:99:.:869,0,462:13,6,20,12 +chrX 1061774 . A T 734 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=14.42;BaseQRankSum=0.62;DP=117;ExcessHet=0.0000;FS=3.844;MQ=59.69;MQRankSum=-0.907;QD=14.42;ReadPosRankSum=-1.346;SOR=1.273;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,258 0/1:25,28:53:99:.:764,0,635:12,13,10,18 +chrX 1062215 . T C 4254 . AC=3;AF=1.00;AN=3;AS_AltDP=119;AS_QD=28.82;BaseQRankSum=2.231;DP=124;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=35.70;ReadPosRankSum=-0.508;SOR=0.250;VarDP=120 GT:AD:DP:GQ:PL:SB 1:0,62:62:99:2444,0:0,0,31,31 1/1:1,57:58:99:1840,164,0:0,1,29,28 +chrX 1062222 . C A 442 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=8.14;BaseQRankSum=0.898;DP=108;ExcessHet=0.0000;FS=1.040;MQ=60.00;MQRankSum=0;QD=8.14;ReadPosRankSum=-0.321;SOR=0.668;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 1:22,36:58:99:.:472,0:12,10,17,19 0/0:.:50:90:50:0,90,1306 +chrX 1062489 . C CCT 289.97 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=9.97;BaseQRankSum=1.043;DP=104;ExcessHet=0.0000;FS=1.423;MQ=60.00;MQRankSum=0;QD=9.97;ReadPosRankSum=0.73;SOR=0.962;VarDP=33 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:99:60:0,1300 0/1:21,12:33:99:.:329,0,643:10,11,7,5 +chrX 1062552 . C G 3336 . AC=3;AF=1.00;AN=3;AS_AltDP=107;AS_QD=31.46;DP=111;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.46;SOR=0.750;VarDP=107 GT:AD:DP:GQ:PL:SB 1:0,56:56:99:1814,0:0,0,31,25 1/1:0,51:51:99:1552,152,0:0,0,24,27 +chrX 1063156 . G C 644 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=14.04;BaseQRankSum=-1.144;DP=109;ExcessHet=0.0000;FS=2.587;MQ=60.00;MQRankSum=0;QD=14.04;ReadPosRankSum=0.714;SOR=1.186;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:70:59:0,70 0/1:22,26:48:99:.:674,0,591:9,13,8,18 +chrX 1063183 . A G 1667 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=32.02;DP=113;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.02;SOR=1.287;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:70:59:0,70 1/1:0,53:53:99:.:1697,159,0:0,0,20,33 +chrX 1063240 . A G 1717 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=32.96;DP=115;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.96;SOR=1.287;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:70:59:0,70 1/1:0,53:53:99:.:1747,159,0:0,0,20,33 +chrX 1063363 . C T 2076 . AC=3;AF=1.00;AN=3;AS_AltDP=75;AS_QD=20.85;BaseQRankSum=1.543;DP=104;ExcessHet=0.0000;FS=9.547;MQ=60.00;MQRankSum=0;QD=20.85;ReadPosRankSum=0.679;SOR=1.104;VarDP=101 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:26,26:52:10:.:.:10,0:.:11,15,15,11 1|1:0,49:49:99:0|1:1063363_C_T:2096,147,0:1063363:0,0,31,18 +chrX 1063368 . CA C 2056.97 . AC=2;AF=0.667;AN=3;AS_AltDP=49;AS_QD=27.15;DP=102;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=42.78;SOR=1.345;VarDP=49 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:53:99:53:.:.:0,1260 1|1:0,49:49:99:.:0|1:1063363_C_T:2096,147,0:1063363:0,0,31,18 +chrX 1063446 . C T 2014 . AC=3;AF=1.00;AN=3;AS_AltDP=93;AS_QD=15.72;BaseQRankSum=2.904;DP=140;ExcessHet=0.0000;FS=1.582;MQ=59.45;MQRankSum=1.945;QD=15.72;ReadPosRankSum=-0.224;SOR=0.922;VarDP=130 GT:AD:DP:GQ:PL:SB 1:37,33:70:58:58,0:20,17,20,13 1/1:0,60:60:99:1986,180,0:0,0,35,25 +chrX 1063484 . G C 2680 . AC=3;AF=1.00;AN=3;AS_AltDP=101;AS_QD=19.50;BaseQRankSum=1.857;DP=143;ExcessHet=0.0000;FS=4.678;MQ=59.34;MQRankSum=0.45;QD=19.50;ReadPosRankSum=1.783;SOR=0.393;VarDP=139 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:37,40:77:99:.:.:125,0:.:24,13,24,16 1|1:1,61:62:99:0|1:1063484_G_C:2585,152,0:1063484:1,0,33,28 +chrX 1063496 . G A 2672 . AC=3;AF=1.00;AN=3;AS_AltDP=102;AS_QD=19.03;BaseQRankSum=1.691;DP=144;ExcessHet=0.0000;FS=5.920;MQ=59.35;MQRankSum=0.378;QD=19.03;ReadPosRankSum=1.741;SOR=0.335;VarDP=142 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:39,40:79:55:.:.:55,0:.:26,13,24,16 1|1:1,62:63:99:0|1:1063484_G_C:2647,155,0:1063484:1,0,33,29 +chrX 1063796 . G A 3837 . AC=3;AF=1.00;AN=3;AS_AltDP=117;AS_QD=33.05;DP=124;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.05;SOR=1.112;VarDP=117 GT:AD:DP:GQ:PL:SB 1:0,54:54:99:1807,0:0,0,33,21 1/1:0,63:63:99:2060,189,0:0,0,36,27 +chrX 1063931 . G A 3847 . AC=3;AF=1.00;AN=3;AS_AltDP=117;AS_QD=33.14;DP=125;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.14;SOR=0.856;VarDP=117 GT:AD:DP:GQ:PL:SB 1:0,59:59:99:1991,0:0,0,24,35 1/1:0,58:58:99:1886,173,0:0,0,30,28 +chrX 1064330 . A G 2164 . AC=2;AF=0.667;AN=3;AS_AltDP=71;AS_QD=21.30;BaseQRankSum=-2.129;DP=108;ExcessHet=0.0000;FS=2.802;MQ=59.89;MQRankSum=0;QD=21.30;ReadPosRankSum=-0.978;SOR=0.815;VarDP=103 GT:AD:DP:GQ:PL:SB 1:0,49:49:99:1703,0:0,0,24,25 0/1:32,22:54:99:491,0,911:17,15,8,14 +chrX 1064477 . G A 446 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=9.52;BaseQRankSum=0.784;DP=112;ExcessHet=0.0000;FS=1.209;MQ=60.00;MQRankSum=0;QD=9.52;ReadPosRankSum=-0.83;SOR=0.941;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:59:61:0,59 0/1:31,19:50:99:.:476,0,853:10,21,5,14 +chrX 1064604 . C T 3226 . AC=2;AF=0.667;AN=3;AS_AltDP=77;AS_QD=28.81;BaseQRankSum=0.92;DP=113;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=28.81;ReadPosRankSum=-1.671;SOR=0.711;VarDP=113 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,54:54:99:.:.:2419,0:.:0,0,30,24 0|1:36,23:59:99:0|1:1064604_C_T:837,0,1370:1064604:20,16,13,10 +chrX 1064614 . C T 3274 . AC=2;AF=0.667;AN=3;AS_AltDP=78;AS_QD=29.77;BaseQRankSum=0.651;DP=115;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=29.77;ReadPosRankSum=-1.528;SOR=0.761;VarDP=111 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,57:57:99:.:.:2522,0:.:0,0,33,24 0|1:33,21:54:99:0|1:1064604_C_T:782,0,1291:1064604:19,14,13,8 +chrX 1064650 . G C 3718 . AC=3;AF=1.00;AN=3;AS_AltDP=116;AS_QD=32.31;DP=119;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.31;SOR=0.918;VarDP=116 GT:AD:DP:GQ:PL:SB 1:0,61:61:99:2020,0:0,0,32,29 1/1:0,55:55:99:1728,165,0:0,0,32,23 +chrX 1064750 . C T 1992 . AC=2;AF=0.667;AN=3;AS_AltDP=66;AS_QD=20.85;BaseQRankSum=0.293;DP=99;ExcessHet=0.0000;FS=1.750;MQ=57.40;MQRankSum=-0.887;QD=20.85;ReadPosRankSum=1.349;SOR=0.523;VarDP=97 GT:AD:DP:GQ:PL:SB 1:0,48:48:99:1573,0:0,0,24,24 0/1:31,18:49:99:449,0,852:18,13,11,7 +chrX 1064783 . A G 2005 . AC=2;AF=0.667;AN=3;AS_AltDP=71;AS_QD=20.98;BaseQRankSum=2.184;DP=100;ExcessHet=0.0000;FS=0.851;MQ=53.68;MQRankSum=-0.754;QD=20.98;ReadPosRankSum=1.083;SOR=0.584;VarDP=97 GT:AD:DP:GQ:PL:SB 1:1,47:48:99:1473,0:0,1,23,24 0/1:25,24:49:99:562,0,689:14,11,13,11 +chrX 1064842 . C G 2853 . AC=2;AF=0.667;AN=3;AS_AltDP=71;AS_QD=31.68;BaseQRankSum=2.299;DP=91;ExcessHet=0.0000;FS=0.000;MQ=48.52;MQRankSum=-1.125;QD=31.68;ReadPosRankSum=1.291;SOR=0.703;VarDP=91 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,46:47:99:.:.:1922,0:.:1,0,25,21 0|1:19,25:44:99:0|1:1064842_C_G:961,0,691:1064842:10,9,14,11 +chrX 1064858 . T C 2949 . AC=2;AF=0.667;AN=3;AS_AltDP=70;AS_QD=32.74;BaseQRankSum=-0.196;DP=92;ExcessHet=0.0000;FS=6.551;MQ=48.45;MQRankSum=-1.345;QD=32.74;ReadPosRankSum=2.697;SOR=0.593;VarDP=91 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,45:45:99:.:.:2024,0:.:0,0,23,22 0|1:21,25:46:99:0|1:1064842_C_G:955,0,735:1064842:8,13,15,10 +chrX 1064880 . T C 3800 . AC=3;AF=1.00;AN=3;AS_AltDP=99;AS_QD=28.93;DP=102;ExcessHet=0.0000;FS=0.000;MQ=49.93;QD=38.69;SOR=0.713;VarDP=99 GT:AD:DP:GQ:PL:SB 1:0,46:46:99:1972,0:0,0,25,21 1/1:0,53:53:99:1858,157,0:0,0,25,28 +chrX 1064909 . T C 893 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=17.75;BaseQRankSum=-0.013;DP=98;ExcessHet=0.0000;FS=15.407;MQ=54.61;MQRankSum=0.306;QD=17.75;ReadPosRankSum=1.671;SOR=1.706;VarDP=52 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:44:99:44:.:.:0,1380 0|1:28,24:52:99:.:0|1:1064909_T_C:923,0,1103:1064909:17,11,7,17 +chrX 1064911 . G T 2198 . AC=2;AF=0.667;AN=3;AS_AltDP=74;AS_QD=22.28;BaseQRankSum=-2.283;DP=102;ExcessHet=0.0000;FS=7.685;MQ=53.98;MQRankSum=-0.498;QD=22.28;ReadPosRankSum=-1.836;SOR=0.434;VarDP=100 GT:AD:DP:GQ:PL:SB 1:0,46:46:99:1499,0:0,0,22,24 0/1:26,28:54:99:729,0,1008:9,17,17,11 +chrX 1064920 . T C 1096 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=20.11;BaseQRankSum=2.343;DP=115;ExcessHet=0.0000;FS=9.708;MQ=55.86;MQRankSum=0.21;QD=20.11;ReadPosRankSum=1.575;SOR=1.336;VarDP=56 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:58:99:58:.:.:0,1365 0|1:27,29:56:99:.:0|1:1064909_T_C:1126,0,1046:1064909:16,11,10,19 +chrX 1064937 . T C 1159 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=21.62;BaseQRankSum=0.727;DP=115;ExcessHet=0.0000;FS=9.624;MQ=57.06;MQRankSum=-0.82;QD=21.62;ReadPosRankSum=0.671;SOR=1.281;VarDP=55 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:58:99:58:.:.:0,1365 0|1:24,31:55:99:.:0|1:1064909_T_C:1189,0,894:1064909:14,10,11,20 +chrX 1065160 . G A 4720 . AC=3;AF=1.00;AN=3;AS_AltDP=111;AS_QD=28.43;BaseQRankSum=0.989;DP=122;ExcessHet=0.0000;FS=0.000;MQ=58.93;MQRankSum=7.617;QD=42.04;ReadPosRankSum=-1.578;SOR=0.907;VarDP=113 GT:AD:DP:GQ:PL:SB 1:0,55:55:99:2398,0:0,0,29,26 1/1:2,56:58:99:2352,120,0:1,1,32,24 +chrX 1065161 . A C 4829 . AC=3;AF=1.00;AN=3;AS_AltDP=113;AS_QD=30.83;DP=121;ExcessHet=0.0000;FS=0.000;MQ=58.93;QD=43.00;SOR=0.903;VarDP=113 GT:AD:DP:GQ:PL:SB 1:0,55:55:99:2398,0:0,0,29,26 1/1:0,58:58:99:2461,174,0:0,0,33,25 +chrX 1065231 . G A 769 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=15.67;BaseQRankSum=0.494;DP=117;ExcessHet=0.0000;FS=0.000;MQ=58.95;MQRankSum=0.019;QD=15.67;ReadPosRankSum=-1.14;SOR=0.756;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:99:60:0,259 0/1:20,31:51:99:.:799,0,737:10,10,15,16 +chrX 1065235 . G C 695 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=12.50;BaseQRankSum=0.256;DP=119;ExcessHet=0.0000;FS=0.000;MQ=58.98;MQRankSum=-0.218;QD=12.50;ReadPosRankSum=1.328;SOR=0.693;VarDP=58 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:60:99:60:.:.:0,259 0|1:38,20:58:99:.:0|1:1065235_G_C:725,0,1505:1065235:19,19,10,10 +chrX 1065239 . AAT A 730.97 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=13.28;BaseQRankSum=0.623;DP=119;ExcessHet=0.0000;FS=0.000;MQ=58.78;MQRankSum=0.23;QD=13.28;ReadPosRankSum=0.494;SOR=0.738;VarDP=58 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:60:99:60:.:.:0,259 0|1:37,21:58:99:.:0|1:1065235_G_C:770,0,1480:1065235:18,19,11,10 +chrX 1065250 . T TATA 771.97 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=14.48;BaseQRankSum=-0.157;DP=118;ExcessHet=0.0000;FS=1.053;MQ=59.05;MQRankSum=0.017;QD=14.48;ReadPosRankSum=0.185;SOR=0.787;VarDP=56 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:60:99:60:.:.:0,259 0|1:34,22:56:99:.:0|1:1065235_G_C:811,0,1351:1065235:16,18,12,10 +chrX 1065420 . G A 947 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=15.51;BaseQRankSum=-0.923;DP=127;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=15.51;ReadPosRankSum=1.159;SOR=0.814;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:99:60:0,259 0/1:26,37:63:99:.:977,0,675:12,14,16,21 +chrX 1065491 . A T 3625 . AC=3;AF=1.00;AN=3;AS_AltDP=112;AS_QD=32.63;DP=115;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.63;SOR=0.693;VarDP=112 GT:AD:DP:GQ:PL:SB 1:0,62:62:99:2024,0:0,0,35,27 1/1:0,50:50:99:1631,149,0:0,0,21,29 +chrX 1065538 . C A 2772 . AC=3;AF=1.00;AN=3;AS_AltDP=80;AS_QD=34.17;BaseQRankSum=-0.603;DP=116;ExcessHet=0.0000;FS=3.064;MQ=59.81;MQRankSum=-0.139;QD=34.17;ReadPosRankSum=1.473;SOR=0.150;VarDP=82 GT:AD:DP:GQ:PL:SB 1:2,27:29:99:717,0:2,0,14,12 1/1:0,53:53:99:2085,159,0:0,0,25,28 +chrX 1065539 . A AAAAAAC 1037.97 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=20.32;BaseQRankSum=-1.008;DP=123;ExcessHet=0.0000;FS=2.315;MQ=59.69;MQRankSum=-0.907;QD=20.32;ReadPosRankSum=-0.909;SOR=0.945;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:69:99:69:0,615 0/1:25,28:53:99:.:1077,0,955:13,12,12,16 +chrX 1065744 . CGTTA C 6070.97 . AC=3;AF=1.00;AN=3;AS_AltDP=136;AS_QD=31.92;DP=141;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.93;SOR=1.146;VarDP=136 GT:AD:DP:GQ:PL:SB 1:0,80:80:99:3600,0:0,0,30,50 1/1:0,56:56:99:2510,169,0:0,0,25,31 +chrX 1065991 . A G 1584 . AC=1;AF=0.333;AN=3;AS_AltDP=52;AS_QD=31.04;DP=113;ExcessHet=0.0000;FS=0.000;MQ=59.93;QD=31.04;SOR=0.941;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,52:52:99:.:1614,0:0,0,23,29 0/0:.:59:38:59:0,38,1300 +chrX 1066674 . T TA 1695.97 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=27.98;DP=130;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=27.98;SOR=0.758;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:57:99:57:0,1387 1/1:0,62:62:99:.:1735,186,0:0,0,30,32 +chrX 1066960 . C G 2641 . AC=1;AF=0.333;AN=3;AS_AltDP=64;AS_QD=33.42;DP=144;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=41.73;SOR=0.756;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,64:64:99:.:2671,0:0,0,33,31 0/0:.:79:71:79:0,71,1800 +chrX 1066977 . G A 2559 . AC=1;AF=0.333;AN=3;AS_AltDP=61;AS_QD=26.59;DP=141;ExcessHet=0.0000;FS=0.000;MQ=59.84;QD=42.44;SOR=0.865;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,61:61:99:.:2589,0:0,0,33,28 0/0:.:79:71:79:0,71,1800 +chrX 1067316 . G A 917 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=10.41;BaseQRankSum=0.118;DP=181;ExcessHet=0.0000;FS=1.801;MQ=57.92;MQRankSum=-3.954;QD=10.41;ReadPosRankSum=-0.321;SOR=0.709;VarDP=91 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:75:99:75:.:.:0,1065 0|1:58,33:91:99:.:0|1:1067316_G_A:947,0,2139:1067316:31,27,15,17 +chrX 1067323 . C T 816 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=9.95;BaseQRankSum=0.91;DP=174;ExcessHet=0.0000;FS=3.142;MQ=58.23;MQRankSum=-3.977;QD=9.95;ReadPosRankSum=-0.378;SOR=0.801;VarDP=85 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:75:99:75:.:.:0,1065 0|1:57,28:85:99:.:0|1:1067316_G_A:846,0,2146:1067316:31,26,12,15 +chrX 1067327 . T C 816 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=9.95;BaseQRankSum=0.337;DP=175;ExcessHet=0.0000;FS=3.142;MQ=58.25;MQRankSum=-3.977;QD=9.95;ReadPosRankSum=-0.409;SOR=0.801;VarDP=85 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:75:99:75:.:.:0,1065 0|1:57,28:85:99:.:0|1:1067316_G_A:846,0,2146:1067316:31,26,12,15 +chrX 1067372 . C T 39 . AC=1;AF=0.333;AN=3;AS_AltDP=8;AS_QD=1.17;BaseQRankSum=1.348;DP=150;ExcessHet=0.0000;FS=16.673;MQ=58.16;MQRankSum=-2.744;QD=1.17;ReadPosRankSum=-2.143;SOR=2.804;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:75:99:75:0,1065 0/1:51,8:59:69:.:69,0,1698:30,21,1,7 +chrX 1067407 . T A 3488 . AC=3;AF=1.00;AN=3;AS_AltDP=107;AS_QD=32.88;DP=131;ExcessHet=0.0000;FS=0.000;MQ=59.15;QD=32.88;SOR=0.925;VarDP=107 GT:AD:DP:GQ:PL:SB 1:0,60:60:99:1935,0:0,0,30,30 1/1:0,47:47:99:1583,142,0:0,0,16,27 +chrX 1067504 . C CT,CTT 632.97 . AC=2,0;AF=0.667,0.00;AN=3;AS_AltDP=47,2;AS_QD=7.30,0.00;BaseQRankSum=0.875;DP=133;ExcessHet=0.0000;FS=10.084;MQ=59.32;MQRankSum=0;QD=7.15;ReadPosRankSum=-0.57;SOR=0.917;VarDP=94 GT:AD:DP:GQ:PL:SB 1:16,26,2:44:99:301,0,771:6,10,15,13 0/1:29,21,0:50:99:371,0,599,458,661,1119:12,17,14,7 +chrX 1067669 . G C 893 . AC=2;AF=0.667;AN=3;AS_AltDP=48;AS_QD=10.86;BaseQRankSum=2.745;DP=115;ExcessHet=0.0000;FS=11.915;MQ=57.45;MQRankSum=0;QD=10.86;ReadPosRankSum=0.063;SOR=0.158;VarDP=85 GT:AD:DP:GQ:PL:SB 1:20,35:55:99:571,0:5,15,19,16 0/1:17,13:30:99:352,0,456:3,14,1,12 +chrX 1067707 . A T 943 . AC=1;AF=0.333;AN=3;AS_AltDP=42;AS_QD=17.38;BaseQRankSum=1.764;DP=91;ExcessHet=0.0000;FS=11.980;MQ=56.46;MQRankSum=-0.725;QD=17.38;ReadPosRankSum=-0.057;SOR=0.271;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 1:14,42:56:99:.:973,0:3,11,22,20 0/0:.:32:84:32:0,84,1260 +chrX 1067784 . T C 211 . AC=1;AF=0.333;AN=3;AS_AltDP=7;AS_QD=11.48;BaseQRankSum=1.348;DP=80;ExcessHet=0.0000;FS=24.123;MQ=53.76;MQRankSum=-3.162;QD=11.48;ReadPosRankSum=0.524;SOR=4.162;VarDP=21 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:49:99:49:.:.:0,983 0|1:14,7:21:99:.:0|1:1067784_T_C:241,0,567:1067784:10,4,0,7 +chrX 1067787 . GAACCACCAC G 158.97 . AC=1;AF=0.333;AN=3;AS_AltDP=6;AS_QD=8.25;BaseQRankSum=1.486;DP=83;ExcessHet=0.0000;FS=24.644;MQ=55.85;MQRankSum=-3.99;QD=8.25;ReadPosRankSum=0.496;SOR=3.896;VarDP=24 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:49:99:49:.:.:0,983 0|1:18,6:24:99:.:0|1:1067784_T_C:198,0,738:1067784:13,5,0,6 +chrX 1067798 . C G 159 . AC=1;AF=0.333;AN=3;AS_AltDP=6;AS_QD=7.00;BaseQRankSum=1.102;DP=86;ExcessHet=0.0000;FS=28.067;MQ=56.20;MQRankSum=-4.314;QD=7.00;ReadPosRankSum=-1.203;SOR=3.894;VarDP=27 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:49:99:49:.:.:0,983 0|1:21,6:27:99:.:0|1:1067784_T_C:189,0,864:1067784:16,5,0,6 +chrX 1067806 . C A 156 . AC=1;AF=0.333;AN=3;AS_AltDP=6;AS_QD=6.64;BaseQRankSum=1.151;DP=87;ExcessHet=0.0000;FS=26.104;MQ=56.30;MQRankSum=-4.417;QD=6.64;ReadPosRankSum=-2.383;SOR=3.895;VarDP=28 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:49:99:49:.:.:0,983 0|1:22,6:28:99:.:0|1:1067784_T_C:186,0,906:1067784:16,6,0,6 +chrX 1067809 . T C 454 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=16.13;BaseQRankSum=-0.796;DP=89;ExcessHet=0.0000;FS=3.325;MQ=56.49;MQRankSum=1.592;QD=16.13;ReadPosRankSum=2.086;SOR=1.445;VarDP=30 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:49:99:49:.:.:0,983 0|1:17,13:30:99:.:1|0:1067784_T_C:484,0,663:1067784:9,8,9,4 +chrX 1067811 . T C 150 . AC=1;AF=0.333;AN=3;AS_AltDP=6;AS_QD=6.00;BaseQRankSum=1.1;DP=89;ExcessHet=0.0000;FS=28.079;MQ=56.49;MQRankSum=-4.613;QD=6.00;ReadPosRankSum=-2.829;SOR=3.895;VarDP=30 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:49:99:49:.:.:0,983 0|1:24,6:30:99:.:0|1:1067784_T_C:180,0,990:1067784:18,6,0,6 +chrX 1067812 . A C 454 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=16.13;BaseQRankSum=-0.774;DP=90;ExcessHet=0.0000;FS=3.325;MQ=56.58;MQRankSum=1.592;QD=16.13;ReadPosRankSum=1.616;SOR=1.445;VarDP=30 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:49:99:49:.:.:0,983 0|1:17,13:30:99:.:1|0:1067784_T_C:484,0,663:1067784:9,8,9,4 +chrX 1067817 . G T 105 . AC=1;AF=0.333;AN=3;AS_AltDP=5;AS_QD=4.50;BaseQRankSum=0.898;DP=91;ExcessHet=0.0000;FS=24.892;MQ=57.08;MQRankSum=-4.56;QD=4.50;ReadPosRankSum=-2.693;SOR=3.587;VarDP=30 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:49:99:49:.:.:0,983 0|1:25,5:30:99:.:0|1:1067784_T_C:135,0,1035:1067784:19,6,0,5 +chrX 1067819 . G T 63 . AC=1;AF=0.333;AN=3;AS_AltDP=4;AS_QD=3.21;BaseQRankSum=0.793;DP=91;ExcessHet=0.0000;FS=20.535;MQ=57.50;MQRankSum=-4.383;QD=3.21;ReadPosRankSum=-2.605;SOR=3.224;VarDP=29 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:49:99:49:.:.:0,983 0|1:25,4:29:93:.:0|1:1067784_T_C:93,0,1038:1067784:19,6,0,4 +chrX 1067820 . T G 63 . AC=1;AF=0.333;AN=3;AS_AltDP=4;AS_QD=3.21;BaseQRankSum=0.521;DP=91;ExcessHet=0.0000;FS=20.535;MQ=57.50;MQRankSum=-4.383;QD=3.21;ReadPosRankSum=-2.073;SOR=3.224;VarDP=29 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:49:99:49:.:.:0,983 0|1:25,4:29:93:.:0|1:1067784_T_C:93,0,1038:1067784:19,6,0,4 +chrX 1067905 . T C 2785 . AC=2;AF=0.667;AN=3;AS_AltDP=92;AS_QD=26.06;BaseQRankSum=-0.561;DP=131;ExcessHet=0.0000;FS=15.216;MQ=59.93;MQRankSum=0;QD=26.06;ReadPosRankSum=0.414;SOR=0.085;VarDP=108 GT:AD:DP:GQ:PL:SB 1:0,67:67:99:2159,0:0,0,31,36 0/1:16,25:41:99:656,0,378:13,3,16,9 +chrX 1067949 . CT C 2164.97 . AC=3;AF=1.00;AN=3;AS_AltDP=80;AS_QD=27.55;DP=121;ExcessHet=0.0000;FS=0.000;MQ=59.71;QD=27.55;SOR=0.796;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,49:49:99:1364,0:0,0,24,25 1/1:0,31:31:93:840,93,0:0,0,18,13 +chrX 1068892 . G A 84 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=1.90;BaseQRankSum=-0.132;DP=118;ExcessHet=0.0000;FS=5.222;MQ=60.00;MQRankSum=0;QD=1.90;ReadPosRankSum=-0.563;SOR=0.965;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 1:28,32:60:99:.:114,0:12,16,19,13 0/0:.:57:48:57:0,48,1165 +chrX 1068905 . G A 561 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=12.57;BaseQRankSum=1.245;DP=113;ExcessHet=0.0000;FS=1.121;MQ=60.00;MQRankSum=0;QD=12.57;ReadPosRankSum=-1.152;SOR=0.815;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,1800 0/1:25,22:47:99:.:591,0,642:13,12,10,12 +chrX 1069058 . G T 1861 . AC=1;AF=0.333;AN=3;AS_AltDP=57;AS_QD=33.18;DP=113;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.18;SOR=1.047;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,57:57:99:.:1891,0:0,0,24,33 0/0:.:55:99:55:0,100,1255 +chrX 1069765 . C T 1885 . AC=1;AF=0.333;AN=3;AS_AltDP=58;AS_QD=33.02;DP=115;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.02;SOR=0.914;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,58:58:99:.:1915,0:0,0,32,26 0/0:.:55:99:55:0,100,1255 +chrX 1069898 . G A 612 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=16.46;BaseQRankSum=0.671;DP=98;ExcessHet=0.0000;FS=9.502;MQ=59.81;MQRankSum=1.251;QD=16.46;ReadPosRankSum=-0.171;SOR=1.271;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:53:99:53:0,1404 0/1:16,23:39:99:.:642,0,383:10,6,8,15 +chrX 1070069 . A G 2312 . AC=2;AF=0.667;AN=3;AS_AltDP=78;AS_QD=22.74;BaseQRankSum=-0.143;DP=104;ExcessHet=0.0000;FS=4.377;MQ=60.00;MQRankSum=0;QD=22.74;ReadPosRankSum=0.115;SOR=0.758;VarDP=103 GT:AD:DP:GQ:PL:SB 1:0,47:47:99:1513,0:0,0,23,24 0/1:25,31:56:99:829,0,641:14,11,12,19 +chrX 1070332 . A C 3505 . AC=3;AF=1.00;AN=3;AS_AltDP=108;AS_QD=32.73;DP=110;ExcessHet=0.0000;FS=0.000;MQ=59.90;QD=32.73;SOR=0.730;VarDP=108 GT:AD:DP:GQ:PL:SB 1:0,59:59:99:1927,0:0,0,33,26 1/1:0,49:49:99:1608,147,0:0,0,22,27 +chrX 1070438 . G C 1851 . AC=1;AF=0.333;AN=3;AS_AltDP=56;AS_QD=33.00;BaseQRankSum=3.531;DP=98;ExcessHet=0.0000;FS=4.548;MQ=59.92;MQRankSum=0;QD=33.00;ReadPosRankSum=-0.73;SOR=1.351;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,56:57:99:.:1881,0:0,1,37,19 0/0:.:40:36:39:0,36,1111 +chrX 1070501 . G GAGGA 162.97 . AC=1;AF=0.333;AN=3;AS_AltDP=7;AS_QD=8.42;BaseQRankSum=-2.203;DP=81;ExcessHet=0.0000;FS=0.000;MQ=59.43;MQRankSum=0.993;QD=8.42;ReadPosRankSum=-0.286;SOR=0.358;VarDP=24 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:49:99:49:0,1061 0/1:17,7:24:99:.:202,0,622:15,2,6,1 +chrX 1070544 . GAGAA G 1007.97 . AC=2;AF=0.667;AN=3;AS_AltDP=24;AS_QD=32.18;DP=82;ExcessHet=0.0000;FS=0.000;MQ=59.67;QD=43.63;SOR=1.519;VarDP=24 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:49:99:49:0,1061 1/1:0,24:24:73:.:1047,73,0:0,0,16,8 +chrX 1070612 . A G 1242 . AC=1;AF=0.333;AN=3;AS_AltDP=43;AS_QD=29.58;DP=88;ExcessHet=0.0000;FS=0.000;MQ=59.67;QD=29.58;SOR=0.836;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,43:43:99:.:1272,0:0,0,23,20 0/0:.:44:50:44:0,50,958 +chrX 1070709 . A AAAGG,AAGG 1857.97 . AC=0,3;AF=0.00,1.00;AN=3;AS_AltDP=10,43;AS_QD=28.36,31.73;DP=57;ExcessHet=0.0000;FS=0.000;MQ=59.66;QD=35.79;SOR=1.938;VarDP=53 GT:AD:DP:GQ:PL:SB 2:0,10,13:23:99:609,138,0:0,0,15,8 2/2:0,0,30:30:90:1288,1288,1288,90,90,0:0,0,23,7 +chrX 1070744 . GGAAA G 712.97 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=20.32;BaseQRankSum=2.416;DP=72;ExcessHet=0.0000;FS=0.000;MQ=58.12;MQRankSum=-0.877;QD=20.32;ReadPosRankSum=-2.218;SOR=0.566;VarDP=37 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:35:25:32:0,25 0/1:17,20:37:99:.:752,0,654:10,7,11,9 +chrX 1070781 . G C 321 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=9.49;BaseQRankSum=-1.591;DP=70;ExcessHet=0.0000;FS=0.000;MQ=58.61;MQRankSum=0.453;QD=9.49;ReadPosRankSum=1.402;SOR=0.655;VarDP=37 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:35:25:32:0,25 0/1:21,16:37:99:.:351,0,759:12,9,9,7 +chrX 1070812 . G GA 940.97 . AC=3;AF=1.00;AN=3;AS_AltDP=31;AS_QD=24.50;BaseQRankSum=-0.871;DP=72;ExcessHet=0.0000;FS=0.000;MQ=59.32;MQRankSum=0;QD=24.50;ReadPosRankSum=-0.116;SOR=0.569;VarDP=40 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:8,15:23:99:.:.:322,0:.:0,0,12,3 1|1:1,16:17:7:0|1:1070812_G_GA:658,7,0:1070812:1,0,8,8 +chrX 1070844 . GAA G 1098.97 . AC=2;AF=0.667;AN=3;AS_AltDP=27;AS_QD=30.45;BaseQRankSum=-0.969;DP=66;ExcessHet=0.0000;FS=0.000;MQ=57.93;MQRankSum=-0.231;QD=40.64;ReadPosRankSum=1.222;SOR=0.335;VarDP=28 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:36:99:36:.:.:0,541 1|1:1,27:28:39:.:0|1:1070812_G_GA:1138,39,0:1070812:1,0,13,14 +chrX 1070854 . AAG A 1127.97 . AC=2;AF=0.667;AN=3;AS_AltDP=28;AS_QD=29.30;BaseQRankSum=-0.587;DP=70;ExcessHet=0.0000;FS=0.000;MQ=58.17;MQRankSum=-0.226;QD=40.24;ReadPosRankSum=1.435;SOR=0.223;VarDP=29 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:36:99:36:.:.:0,541 1|1:1,28:29:42:.:0|1:1070812_G_GA:1167,42,0:1070812:1,0,14,14 +chrX 1070856 . G GAGAAAGAA,GAAAGAGAAAGAA,* 106.97 . AC=0,1,2;AF=0.00,0.333,0.667;AN=3;AS_AltDP=0,15,0;AS_QD=0.00,4.56,0.00;BaseQRankSum=-1.164;DP=73;ExcessHet=0.0000;FS=1.106;MQ=59.88;MQRankSum=1.002;QD=4.56;ReadPosRankSum=2.136;SOR=0.502;VarDP=32 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 2:17,0,15,0:32:99:.:.:146,665,0,788:.:11,6,12,3 3|3:1,0,0,28:29:42:0|1:1070812_G_GA:1167,1170,1212,1170,1212,1212,42,84,84,0:1070812:1,0,14,14 +chrX 1070913 . A AAAG 4195.97 . AC=3;AF=1.00;AN=3;AS_AltDP=99;AS_QD=30.48;DP=106;ExcessHet=0.0000;FS=0.000;MQ=59.74;QD=42.78;SOR=0.888;VarDP=99 GT:AD:DP:GQ:PL:SB 1:0,48:48:99:2043,0:0,0,24,24 1/1:0,51:51:99:2192,153,0:0,0,21,30 +chrX 1071132 . T C 830 . AC=1;AF=0.500;AN=2;AS_AltDP=32;AS_QD=14.10;BaseQRankSum=0.041;DP=128;ExcessHet=0.0000;FS=3.558;MQ=59.68;MQRankSum=-0.501;QD=14.10;ReadPosRankSum=-1.589;SOR=0.336;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB .:.:64:0:64:0,0 0/1:29,32:61:99:.:860,0,744:11,18,16,16 +chrX 1071249 . G A 3857 . AC=3;AF=1.00;AN=3;AS_AltDP=116;AS_QD=33.51;DP=120;ExcessHet=0.0000;FS=0.000;MQ=58.85;QD=33.51;SOR=1.003;VarDP=116 GT:AD:DP:GQ:PL:SB 1:0,62:62:99:2051,0:0,0,31,31 1/1:0,54:54:99:1836,162,0:0,0,35,19 +chrX 1071926 . C T 908 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=15.90;BaseQRankSum=-0.655;DP=121;ExcessHet=0.0000;FS=0.000;MQ=59.05;MQRankSum=-0.263;QD=15.90;ReadPosRankSum=-0.671;SOR=0.656;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:84:62:0,84 0/1:24,35:59:99:.:938,0,607:14,10,20,15 +chrX 1072115 . C T 689 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=14.10;BaseQRankSum=1.479;DP=115;ExcessHet=0.0000;FS=1.101;MQ=60.00;MQRankSum=0;QD=14.10;ReadPosRankSum=-0.481;SOR=0.929;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:84:62:0,84 0/1:25,26:51:99:.:719,0,645:10,15,9,17 +chrX 1072174 . T G 548 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=15.62;BaseQRankSum=0;DP=99;ExcessHet=0.0000;FS=1.289;MQ=60.00;MQRankSum=0;QD=15.62;ReadPosRankSum=-1.289;SOR=0.604;VarDP=37 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:84:62:0,84 0/1:16,21:37:99:.:578,0,414:7,9,11,10 +chrX 1072429 . A G 3660 . AC=3;AF=1.00;AN=3;AS_AltDP=115;AS_QD=32.09;DP=118;ExcessHet=0.0000;FS=0.000;MQ=59.59;QD=32.09;SOR=0.899;VarDP=115 GT:AD:DP:GQ:PL:SB 1:0,52:52:99:1651,0:0,0,23,29 1/1:0,63:63:99:2039,189,0:0,0,29,34 +chrX 1072455 . T G 579 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=9.37;BaseQRankSum=-1.159;DP=125;ExcessHet=0.0000;FS=2.210;MQ=59.65;MQRankSum=0;QD=9.37;ReadPosRankSum=0.061;SOR=0.394;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:57:99:57:0,238 0/1:40,25:65:99:.:609,0,1156:14,26,11,14 +chrX 1072635 . C T 809 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=14.47;BaseQRankSum=1.239;DP=117;ExcessHet=0.0000;FS=1.048;MQ=60.00;MQRankSum=0;QD=14.47;ReadPosRankSum=0.397;SOR=0.963;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:57:99:57:0,238 0/1:28,30:58:99:.:839,0,724:17,11,20,10 +chrX 1072731 . G C 555 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=12.19;BaseQRankSum=1.291;DP=106;ExcessHet=0.0000;FS=4.231;MQ=60.00;MQRankSum=0;QD=12.19;ReadPosRankSum=0.052;SOR=0.294;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:57:99:57:0,238 0/1:27,21:48:99:.:585,0,774:19,8,12,9 +chrX 1073011 . CAAAA CAA,CAAA,CAAAAAAAAAAA,C,CAAAAA 842.97 . AC=0,2,0,1,0;AF=0.00,0.667,0.00,0.333,0.00;AN=3;AS_AltDP=15,18,14,14,2;AS_QD=15.12,24.05,0.38,28.75,2.00;BaseQRankSum=1.107;DP=98;ExcessHet=0.0000;FS=2.806;MQ=59.10;MQRankSum=-0.151;QD=13.57;ReadPosRankSum=0.314;SOR=1.802;VarDP=65 GT:AD:DP:GQ:PL:SB 2:0,15,12,14,0,0:41:96:353,96,0,347,411,411:0,0,27,14 2/4:2,0,6,0,14,2:24:69:529,551,637,401,446,412,551,637,446,637,69,173,0,173,329,521,594,399,594,129,592:1,1,17,5 +chrX 1073338 . G GCATAA 1696.97 . AC=3;AF=1.00;AN=3;AS_AltDP=55;AS_QD=30.46;BaseQRankSum=0.354;DP=101;ExcessHet=0.0000;FS=2.788;MQ=59.83;MQRankSum=0;QD=30.46;ReadPosRankSum=0.696;SOR=0.248;VarDP=57 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:2,32:34:99:.:.:974,0:.:0,2,15,17 1|1:0,23:23:68:0|1:1073338_G_GCATAA:762,68,0:1073338:0,0,6,17 +chrX 1073355 . G A,GTAACA 2362 . AC=3,0;AF=1.00,0.00;AN=3;AS_AltDP=57,0;AS_QD=29.87,31.30;BaseQRankSum=2.2;DP=94;ExcessHet=0.0000;FS=0.000;MQ=59.82;MQRankSum=0;QD=41.24;ReadPosRankSum=1.041;SOR=0.478;VarDP=58 GT:AD:DP:GQ:PL:SB 1:1,34,0:35:99:1374,0,1549:0,1,16,18 1/1:0,23,0:23:68:1018,68,0,871,118,1270:0,0,6,17 +chrX 1073457 . T A 2859 . AC=3;AF=1.00;AN=3;AS_AltDP=86;AS_QD=33.59;DP=95;ExcessHet=0.0000;FS=0.000;MQ=59.98;QD=33.59;SOR=0.947;VarDP=86 GT:AD:DP:GQ:PL:SB 1:0,38:38:99:1320,0:0,0,26,12 1/1:0,48:48:99:1569,144,0:0,0,22,26 +chrX 1073553 . AAAAT A 150.97 . AC=1;AF=0.333;AN=3;AS_AltDP=9;AS_QD=5.76;BaseQRankSum=-1.364;DP=128;ExcessHet=0.0000;FS=0.000;MQ=58.12;MQRankSum=1.319;QD=5.76;ReadPosRankSum=1.782;SOR=0.722;VarDP=33 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:84:99:84:0,1097 0/1:24,9:33:99:.:190,0,913:13,11,5,4 +chrX 1073668 . A AAAT 549.97 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=16.83;BaseQRankSum=-1.4;DP=129;ExcessHet=0.0000;FS=1.344;MQ=54.06;MQRankSum=-2.233;QD=16.83;ReadPosRankSum=0.282;SOR=1.112;VarDP=35 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:84:99:84:.:.:0,1097 0|1:19,16:35:99:.:0|1:1073668_A_AAAT:589,0,749:1073668:9,10,6,10 +chrX 1073673 . G A 559 . AC=1;AF=0.500;AN=2;AS_AltDP=16;AS_QD=16.83;BaseQRankSum=-0.452;DP=179;ExcessHet=0.0000;FS=1.344;MQ=54.10;MQRankSum=-2.233;QD=16.83;ReadPosRankSum=-0.282;SOR=1.112;VarDP=35 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB .:.:138:0:138:.:.:0,0 0|1:19,16:35:99:.:0|1:1073668_A_AAAT:589,0,749:1073668:9,10,6,10 +chrX 1074199 . TAAAATAAAATAAAATATA T 173.97 . AC=1;AF=0.333;AN=3;AS_AltDP=7;AS_QD=8.19;BaseQRankSum=1.813;DP=100;ExcessHet=0.0000;FS=4.222;MQ=59.97;MQRankSum=0.656;QD=8.19;ReadPosRankSum=-1.09;SOR=1.206;VarDP=26 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:99:68:0,237 0/1:19,7:26:99:.:213,0,710:11,8,2,4 +chrX 1074389 . A G 2777 . AC=2;AF=0.667;AN=3;AS_AltDP=96;AS_QD=21.27;BaseQRankSum=-0.034;DP=139;ExcessHet=0.0000;FS=0.731;MQ=60.00;MQRankSum=0;QD=21.27;ReadPosRankSum=1.002;SOR=0.572;VarDP=132 GT:AD:DP:GQ:PL:SB 1:0,57:57:99:1816,0:0,0,29,28 0/1:36,39:75:99:991,0,897:20,16,21,18 +chrX 1074424 . C A 900 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=12.92;BaseQRankSum=-0.724;DP=130;ExcessHet=0.0000;FS=1.910;MQ=60.00;MQRankSum=0;QD=12.92;ReadPosRankSum=0.231;SOR=0.938;VarDP=72 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:53:99:53:0,1479 0/1:37,35:72:99:.:930,0,1020:18,19,15,20 +chrX 1074475 . A G 3587 . AC=3;AF=1.00;AN=3;AS_AltDP=108;AS_QD=33.49;DP=115;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.49;SOR=1.232;VarDP=108 GT:AD:DP:GQ:PL:SB 1:0,46:46:99:1559,0:0,0,18,28 1/1:0,62:62:99:2058,186,0:0,0,24,38 +chrX 1074950 . G A 2076 . AC=1;AF=0.333;AN=3;AS_AltDP=50;AS_QD=33.98;DP=97;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=42.12;SOR=1.270;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,50:50:99:.:2106,0:0,0,19,31 0/0:.:50:39:46:0,39,993 +chrX 1074984 . G A 2021 . AC=1;AF=0.333;AN=3;AS_AltDP=49;AS_QD=33.74;DP=95;ExcessHet=0.0000;FS=0.000;MQ=59.83;QD=41.86;SOR=1.007;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,49:49:99:.:2051,0:0,0,21,28 0/0:.:50:39:46:0,39,993 +chrX 1075133 . C A 1556 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=29.92;DP=82;ExcessHet=0.0000;FS=0.000;MQ=59.72;QD=44.06;SOR=1.209;VarDP=36 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,36:36:99:.:1586,0:0,0,14,22 0/0:.:50:39:46:0,39,993 +chrX 1075135 . G A 1590 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=28.22;DP=83;ExcessHet=0.0000;FS=0.000;MQ=59.73;QD=43.78;SOR=1.270;VarDP=37 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,37:37:99:.:1620,0:0,0,14,23 0/0:.:50:39:46:0,39,993 +chrX 1075207 . C T 1407 . AC=1;AF=0.333;AN=3;AS_AltDP=39;AS_QD=34.21;BaseQRankSum=0.806;DP=88;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=34.21;ReadPosRankSum=1.102;SOR=0.467;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 1:3,39:42:99:.:1437,0:2,1,21,18 0/0:.:50:39:46:0,39,993 +chrX 1075299 . A G 1023 . AC=1;AF=0.333;AN=3;AS_AltDP=48;AS_QD=21.49;BaseQRankSum=-0.745;DP=84;ExcessHet=0.0000;FS=0.000;MQ=59.67;MQRankSum=0;QD=21.49;ReadPosRankSum=-0.177;SOR=0.390;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,48:49:99:.:1053,0:1,0,28,20 0/0:.:34:4:34:0,4,864 +chrX 1075436 . C T 1276 . AC=1;AF=0.333;AN=3;AS_AltDP=43;AS_QD=27.79;BaseQRankSum=1.681;DP=91;ExcessHet=0.0000;FS=13.041;MQ=60.00;MQRankSum=0;QD=27.79;ReadPosRankSum=-0.668;SOR=0.472;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 1:4,43:47:99:.:1306,0:0,4,24,19 0/0:.:41:49:41:0,49,901 +chrX 1075526 . T C 1303 . AC=2;AF=0.667;AN=3;AS_AltDP=42;AS_QD=31.74;DP=100;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.74;SOR=1.259;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:57:99:57:0,800 1/1:0,42:42:99:.:1333,126,0:0,0,26,16 +chrX 1075573 . G A 1502 . AC=2;AF=0.667;AN=3;AS_AltDP=49;AS_QD=31.27;DP=110;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.27;SOR=1.345;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:57:99:57:0,800 1/1:0,49:49:99:.:1532,147,0:0,0,31,18 +chrX 1075639 . A C 670 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=12.50;BaseQRankSum=-1.998;DP=114;ExcessHet=0.0000;FS=2.182;MQ=60.00;MQRankSum=0;QD=12.50;ReadPosRankSum=1.493;SOR=0.587;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:57:99:57:0,800 0/1:27,29:56:99:.:700,0,728:12,15,15,14 +chrX 1075771 . G C,GATAC 667 . AC=1,0;AF=0.333,0.00;AN=3;AS_AltDP=23,0;AS_QD=12.67,0.00;BaseQRankSum=0.768;DP=124;ExcessHet=0.0000;FS=2.361;MQ=60.00;MQRankSum=0;QD=12.67;ReadPosRankSum=-0.034;SOR=0.371;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:57:99:57:0,800,800 0/1:32,23,0:55:99:.:697,0,1015,767,1040,2328:20,12,12,11 +chrX 1076249 . GAA G,GA,GAAA 1744.97 . AC=1,0,2;AF=0.333,0.00,0.667;AN=3;AS_AltDP=17,15,49;AS_QD=32.28,36.29,23.82;DP=91;ExcessHet=0.0000;FS=0.000;MQ=59.95;QD=22.02;SOR=1.124;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,17,15,0:32:61:617,0,61,536:0,0,17,15 3/3:0,0,0,49:49:99:1167,1167,1167,1167,1167,1167,145,145,145,0:0,0,31,18 +chrX 1076280 . C T 2842 . AC=3;AF=1.00;AN=3;AS_AltDP=91;AS_QD=31.22;BaseQRankSum=-0.548;DP=99;ExcessHet=0.0000;FS=0.000;MQ=59.95;MQRankSum=0;QD=31.22;ReadPosRankSum=0.128;SOR=0.258;VarDP=92 GT:AD:DP:GQ:PL:SB 1:0,38:38:99:1220,0:0,0,17,21 1/1:1,53:54:99:1652,127,0:0,1,29,24 +chrX 1076678 . CA C 2130.97 . AC=3;AF=1.00;AN=3;AS_AltDP=84;AS_QD=25.53;DP=112;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=25.53;SOR=0.243;VarDP=85 GT:AD:DP:GQ:PL:SB 1:0,44:44:99:1138,0:0,0,22,20 1/1:1,40:41:97:1032,97,0:0,1,18,22 +chrX 1076933 . T C 2963 . AC=3;AF=1.00;AN=3;AS_AltDP=94;AS_QD=31.84;DP=94;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.84;SOR=0.976;VarDP=94 GT:AD:DP:GQ:PL:SB 1:0,49:49:99:1516,0:0,0,26,23 1/1:0,45:45:99:1477,135,0:0,0,27,18 +chrX 1077471 . A G 3587 . AC=3;AF=1.00;AN=3;AS_AltDP=112;AS_QD=32.29;DP=116;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.29;SOR=1.061;VarDP=112 GT:AD:DP:GQ:PL:SB 1:0,72:72:99:2297,0:0,0,42,30 1/1:0,40:40:99:1320,120,0:0,0,23,17 +chrX 1077668 . G A 213 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=4.86;BaseQRankSum=0.812;DP=105;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=4.86;ReadPosRankSum=0.479;SOR=0.799;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 1:22,28:50:99:.:243,0:12,10,16,12 0/0:.:54:99:54:0,101,1377 +chrX 1077834 . A G 1776 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=32.25;DP=110;ExcessHet=0.0000;FS=0.000;MQ=59.92;QD=32.25;SOR=1.302;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:55:55:49:0,55 1/1:0,56:56:99:.:1806,167,0:0,0,21,35 +chrX 1077865 . G A 1742 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=33.43;DP=104;ExcessHet=0.0000;FS=0.000;MQ=59.91;QD=33.43;SOR=1.287;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:55:55:49:0,55 1/1:0,53:53:99:.:1772,159,0:0,0,20,33 +chrX 1078063 . C T 1155 . AC=2;AF=0.667;AN=3;AS_AltDP=37;AS_QD=32.03;DP=87;ExcessHet=0.0000;FS=0.000;MQ=59.40;QD=32.03;SOR=0.984;VarDP=37 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:55:55:49:0,55 1/1:0,37:37:99:.:1185,110,0:0,0,21,16 +chrX 1078130 . G GTATATATATATATA,GTGTATATATATATATA,GTA,GTATATA,GTGTGTA,GTGTGTGTA,GTGTGTATATA,GTGTGTGTATATA 1627.97 . AC=0,1,0,0,0,1,1,0;AF=0.00,0.333,0.00,0.00,0.00,0.333,0.333,0.00;AN=3;AS_AltDP=1,6,0,0,0,13,9,0;AS_QD=0.00,29.03,20.67,20.33,29.23,28.85,30.59,27.90;BaseQRankSum=0;DP=75;ExcessHet=0.0000;FS=5.968;MQ=57.80;MQRankSum=1.019;QD=52.09;ReadPosRankSum=-0.984;SOR=0.088;VarDP=32 GT:AD:DP:GQ:SB 2:3,1,6,0,0,0,0,0,0:10:99:3,0,5,2 6/7:0,0,0,0,0,0,13,9,0:22:99:0,0,11,11 +chrX 1078257 . T TG 3235.97 . AC=3;AF=1.00;AN=3;AS_AltDP=88;AS_QD=32.67;DP=93;ExcessHet=0.0000;FS=0.000;MQ=59.77;QD=37.22;SOR=0.836;VarDP=88 GT:AD:DP:GQ:PL:SB 1:0,39:39:99:1456,0:0,0,18,21 1/1:0,49:49:99:1819,147,0:0,0,29,20 +chrX 1078314 . G A 1597 . AC=2;AF=0.667;AN=3;AS_AltDP=50;AS_QD=32.54;DP=91;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.54;SOR=0.952;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:40:36:40:0,36 1/1:0,50:50:99:.:1627,150,0:0,0,28,22 +chrX 1079244 . C T 412 . AC=1;AF=0.333;AN=3;AS_AltDP=42;AS_QD=6.05;BaseQRankSum=2.398;DP=129;ExcessHet=0.0000;FS=8.215;MQ=59.92;MQRankSum=-1.204;QD=6.05;ReadPosRankSum=-0.056;SOR=1.531;VarDP=73 GT:AD:DP:GQ:MIN_DP:PL:SB 1:31,42:73:99:.:442,0:16,15,14,28 0/0:.:54:52:54:0,52,837 +chrX 1079312 . T C 1586 . AC=2;AF=0.667;AN=3;AS_AltDP=50;AS_QD=32.32;DP=108;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.32;SOR=0.773;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:20:58:0,20 1/1:0,50:50:99:.:1616,149,0:0,0,24,26 +chrX 1079367 . A C 1573 . AC=2;AF=0.667;AN=3;AS_AltDP=49;AS_QD=32.71;DP=109;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.71;SOR=0.818;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:20:58:0,20 1/1:0,49:49:99:.:1603,146,0:0,0,26,23 +chrX 1079465 . G C 5888 . AC=3;AF=1.00;AN=3;AS_AltDP=135;AS_QD=31.95;DP=137;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.84;SOR=1.011;VarDP=135 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,71:71:99:.:.:3113,0:.:0,0,29,42 1|1:0,64:64:99:0|1:1079465_G_C:2805,193,0:1079465:0,0,29,35 +chrX 1079474 . C G 5725 . AC=3;AF=1.00;AN=3;AS_AltDP=130;AS_QD=23.34;DP=132;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.27;SOR=1.085;VarDP=130 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,68:68:99:.:.:3019,0:.:0,0,27,41 1|1:0,62:62:99:0|1:1079465_G_C:2736,187,0:1079465:0,0,27,35 +chrX 1079571 . T C 3201 . AC=3;AF=1.00;AN=3;AS_AltDP=104;AS_QD=25.64;BaseQRankSum=-0.991;DP=128;ExcessHet=0.0000;FS=0.000;MQ=59.57;MQRankSum=0.33;QD=25.64;ReadPosRankSum=0.352;SOR=0.645;VarDP=126 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:22,32:54:84:.:.:84,0:.:16,6,24,8 1|1:0,72:72:99:0|1:1079571_T_C:3147,217,0:1079571:0,0,49,23 +chrX 1079589 . C T 3013 . AC=2;AF=0.667;AN=3;AS_AltDP=69;AS_QD=29.82;DP=124;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.10;SOR=1.576;VarDP=69 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:54:99:54:.:.:0,1593 1|1:0,69:69:99:.:0|1:1079571_T_C:3043,208,0:1079571:0,0,46,23 +chrX 1079609 . G A 1588 . AC=1;AF=0.333;AN=3;AS_AltDP=52;AS_QD=29.96;BaseQRankSum=2.431;DP=121;ExcessHet=0.0000;FS=3.421;MQ=59.05;MQRankSum=-0.353;QD=29.96;ReadPosRankSum=1.146;SOR=2.215;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 1:2,52:54:99:.:1618,0:1,1,39,13 0/0:.:63:72:63:0,72,1439 +chrX 1079851 . CT C,CTTTT,CTT 1011.97 . AC=0,1,2;AF=0.00,0.333,0.667;AN=3;AS_AltDP=16,20,33;AS_QD=12.65,20.00,18.56;BaseQRankSum=-0.561;DP=106;ExcessHet=0.0000;FS=3.827;MQ=59.37;MQRankSum=0;QD=15.01;ReadPosRankSum=-1.634;SOR=0.853;VarDP=70 GT:AD:DP:GQ:PL:SB 2:0,16,20,0:36:99:420,205,0,662:0,0,24,12 3/3:1,0,0,33:34:80:631,634,652,634,652,652,80,97,97,0:0,1,17,16 +chrX 1080345 . A T 3450 . AC=3;AF=1.00;AN=3;AS_AltDP=105;AS_QD=26.98;BaseQRankSum=-0.04;DP=132;ExcessHet=0.0000;FS=0.000;MQ=59.62;MQRankSum=1.794;QD=26.98;ReadPosRankSum=0.415;SOR=0.666;VarDP=129 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:24,37:61:99:.:.:533,0:.:10,14,12,25 1|1:0,68:68:99:0|1:1080345_A_T:2947,205,0:1080345:0,0,33,35 +chrX 1080361 . C T 3335 . AC=3;AF=1.00;AN=3;AS_AltDP=100;AS_QD=27.58;BaseQRankSum=-0.525;DP=125;ExcessHet=0.0000;FS=0.000;MQ=59.69;MQRankSum=1.825;QD=27.58;ReadPosRankSum=0.377;SOR=0.714;VarDP=122 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:22,35:57:99:.:.:523,0:.:9,13,10,25 1|1:0,65:65:99:0|1:1080345_A_T:2842,196,0:1080345:0,0,31,34 +chrX 1080677 . G A 1839 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=32.22;DP=111;ExcessHet=0.0000;FS=0.000;MQ=59.72;QD=32.22;SOR=0.693;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:53:64:51:0,64 1/1:0,58:58:99:.:1869,174,0:0,0,29,29 +chrX 1080953 . C T 1881 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=32.95;DP=114;ExcessHet=0.0000;FS=0.000;MQ=59.54;QD=32.95;SOR=0.836;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:53:64:51:0,64 1/1:0,58:58:99:.:1911,174,0:0,0,31,27 +chrX 1081259 . A ACCCTGTCTCT 3150.97 . AC=2;AF=0.667;AN=3;AS_AltDP=76;AS_QD=29.26;DP=130;ExcessHet=0.0000;FS=0.000;MQ=54.85;QD=41.97;SOR=1.349;VarDP=76 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:53:64:51:.:.:0,64 1|1:0,76:76:99:.:0|1:1081259_A_ACCCTGTCTCT:3190,228,0:1081259:0,0,28,48 +chrX 1081260 . A ACTAAAAATACAAAAATTGGTCAGGTGTGGTGGCTCACACCTGTAATCCCAGAATCATGGGAGGCCGAGGCAGGCGGATCACCTGAAGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAAC 3150.97 . AC=2;AF=0.667;AN=3;AS_AltDP=76;AS_QD=27.55;DP=130;ExcessHet=0.0000;FS=0.000;MQ=54.85;QD=41.97;SOR=1.349;VarDP=76 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:53:64:51:.:.:0,64 1|1:0,76:76:99:.:0|1:1081259_A_ACCCTGTCTCT:3190,228,0:1081259:0,0,28,48 +chrX 1081343 . A G 1347 . AC=2;AF=0.667;AN=3;AS_AltDP=40;AS_QD=34.43;DP=96;ExcessHet=0.0000;FS=0.000;MQ=58.34;QD=34.43;SOR=0.793;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:53:64:51:0,64 1/1:0,40:40:99:.:1377,120,0:0,0,21,19 +chrX 1081393 . A G 1031 . AC=2;AF=0.667;AN=3;AS_AltDP=34;AS_QD=31.21;DP=88;ExcessHet=0.0000;FS=0.000;MQ=59.14;QD=31.21;SOR=2.584;VarDP=34 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:53:64:51:0,64 1/1:0,34:34:99:.:1061,101,0:0,0,27,7 +chrX 1081436 . C CAAAA,CAAAAAA 2078.97 . AC=1,2;AF=0.333,0.667;AN=3;AS_AltDP=18,39;AS_QD=20.29,33.52;BaseQRankSum=0.601;DP=106;ExcessHet=0.0000;FS=4.126;MQ=57.92;MQRankSum=-1.181;QD=33.62;ReadPosRankSum=-0.374;SOR=0.165;VarDP=63 GT:AD:DP:GQ:PL:SB 1:6,18,0:24:99:487,0,750:5,1,11,7 2/2:0,0,39:39:99:1631,1632,1633,116,117,0:0,0,21,18 +chrX 1081985 . C T 4069 . AC=3;AF=1.00;AN=3;AS_AltDP=129;AS_QD=31.78;DP=133;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.78;SOR=0.988;VarDP=129 GT:AD:DP:GQ:PL:SB 1:0,67:67:99:2128,0:0,0,38,29 1/1:0,62:62:99:1971,185,0:0,0,35,27 +chrX 1082081 . C T 2105 . AC=2;AF=0.667;AN=3;AS_AltDP=64;AS_QD=33.36;DP=125;ExcessHet=0.0000;FS=0.000;MQ=59.87;QD=33.36;SOR=0.822;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:64:60:0,64 1/1:0,64:64:99:.:2135,192,0:0,0,30,34 +chrX 1082261 . T A 2371 . AC=2;AF=0.667;AN=3;AS_AltDP=74;AS_QD=32.45;DP=147;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.45;SOR=0.804;VarDP=74 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:73:99:73:0,269 1/1:0,74:74:99:.:2401,222,0:0,0,39,35 +chrX 1083442 . C CAA,CA 1514.97 . AC=1,2;AF=0.333,0.667;AN=3;AS_AltDP=32,38;AS_QD=27.41,17.82;DP=97;ExcessHet=0.0000;FS=0.000;MQ=59.27;QD=22.20;SOR=1.329;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,32,0:32:99:877,0,877:0,0,12,20 2/2:0,0,38:38:99:677,677,677,108,108,0:0,0,14,24 +chrX 1083477 . G A 1832 . AC=1;AF=0.333;AN=3;AS_AltDP=56;AS_QD=32.67;BaseQRankSum=2.935;DP=123;ExcessHet=0.0000;FS=0.000;MQ=59.67;MQRankSum=-0.095;QD=32.67;ReadPosRankSum=0.547;SOR=0.252;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,56:57:99:.:1862,0:0,1,27,29 0/0:.:63:79:63:0,79,1201 +chrX 1083657 . C T 1487 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=32.79;DP=76;ExcessHet=0.0000;FS=0.000;MQ=59.92;QD=41.00;SOR=0.859;VarDP=37 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,37:37:99:.:1517,0:0,0,20,17 0/0:.:37:83:37:0,83,1141 +chrX 1083667 . CGACCCAGAGGGCTAGAATTGATAGGGTTGTGTCCCAGGGGGCTAAGATTCGTAGGGTTAT C 1379.97 . AC=1;AF=1.00;AN=1;AS_AltDP=35;AS_QD=34.51;DP=36;ExcessHet=0.0000;FS=3.259;MQ=59.43;MQRankSum=4.364;QD=39.42;SOR=0.491;VarDP=36 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,35:36:99:.:1419,0:0,1,19,16 ./.:.:0:0:0:0,0,0 +chrX 1084241 . G C 233 . AC=1;AF=1.00;AN=1;AS_AltDP=9;AS_QD=26.30;BaseQRankSum=1.036;DP=10;ExcessHet=0.0000;FS=0.000;MQ=42.73;MQRankSum=0.385;QD=26.30;ReadPosRankSum=-1.645;SOR=0.307;VarDP=10 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,9:10:99:.:263,0:1,0,5,4 ./.:.:0:0:0:0,0,0 +chrX 1084898 . T C 5414 . AC=3;AF=1.00;AN=3;AS_AltDP=123;AS_QD=29.49;DP=125;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.26;SOR=0.709;VarDP=123 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,71:71:99:.:.:3149,0:.:0,0,38,33 1|1:0,52:52:99:0|1:1084898_T_C:2295,157,0:1084898:0,0,23,29 +chrX 1084899 . T A 5414 . AC=3;AF=1.00;AN=3;AS_AltDP=123;AS_QD=21.26;DP=129;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.26;SOR=0.709;VarDP=123 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,71:71:99:.:.:3149,0:.:0,0,38,33 1|1:0,52:52:99:0|1:1084898_T_C:2295,157,0:1084898:0,0,23,29 +chrX 1085116 . CT C 3880.97 . AC=3;AF=1.00;AN=3;AS_AltDP=107;AS_QD=32.55;BaseQRankSum=3.429;DP=124;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=36.30;ReadPosRankSum=-0.955;SOR=0.263;VarDP=108 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,48:49:99:.:.:1326,0:.:0,1,16,32 1|1:0,59:59:99:0|1:1085116_CT_C:2594,178,0:1085116:0,0,35,24 +chrX 1085130 . T C 2658 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=30.16;DP=124;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.35;SOR=1.143;VarDP=62 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:61:99:61:.:.:0,1740 1|1:0,62:62:99:.:0|1:1085116_CT_C:2688,187,0:1085116:0,0,37,25 +chrX 1085238 . T C 3546 . AC=3;AF=1.00;AN=3;AS_AltDP=113;AS_QD=31.65;DP=121;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.65;SOR=0.711;VarDP=113 GT:AD:DP:GQ:PL:SB 1:0,59:59:99:1835,0:0,0,33,26 1/1:0,54:54:99:1741,162,0:0,0,23,31 +chrX 1085316 . A G 1776 . AC=1;AF=0.333;AN=3;AS_AltDP=57;AS_QD=31.68;DP=119;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.68;SOR=0.728;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,57:57:99:.:1806,0:0,0,28,29 0/0:.:61:99:61:0,120,1800 +chrX 1085595 . G A 1542 . AC=2;AF=0.667;AN=3;AS_AltDP=50;AS_QD=31.44;DP=118;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.44;SOR=1.051;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,1707 1/1:0,50:50:99:.:1572,149,0:0,0,21,29 +chrX 1085652 . G A 2224 . AC=1;AF=0.333;AN=3;AS_AltDP=66;AS_QD=34.15;DP=133;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=34.15;SOR=0.886;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,66:66:99:.:2254,0:0,0,36,30 0/0:.:64:99:64:0,120,1800 +chrX 1085708 . G C 3152 . AC=1;AF=0.333;AN=3;AS_AltDP=74;AS_QD=29.35;DP=139;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.00;SOR=1.061;VarDP=74 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,74:74:99:.:3182,0:0,0,43,31 0/0:.:64:99:64:0,120,1800 +chrX 1085724 . C A 2943 . AC=1;AF=0.333;AN=3;AS_AltDP=68;AS_QD=28.74;DP=136;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.72;SOR=1.179;VarDP=68 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,68:68:99:.:2973,0:0,0,41,27 0/0:.:64:99:64:0,120,1800 +chrX 1085802 . C CACCCAAAGGGCTGAATTCATAGGGTCGTGACTCATTGTGCTGGATTTGCTGAATTTTGACTCAGAGGGCTAAGAGTTGTAGGGTTATGCCTTATAAAGCTAGATTGATTGTGTTGTGACCCATGGGGCTGAGATTTATAGGGTTGCG 4732.97 . AC=1;AF=0.333;AN=3;AS_AltDP=117;AS_QD=31.40;BaseQRankSum=0.146;DP=197;ExcessHet=0.0000;FS=2.425;MQ=57.77;MQRankSum=-1.85;QD=36.43;ReadPosRankSum=-1.218;SOR=0.355;VarDP=131 GT:AD:DP:GQ:MIN_DP:PL:SB 1:14,117:131:99:.:4772,0:9,5,61,56 0/0:.:64:99:64:0,120,1800 +chrX 1085821 . G A 2098 . AC=2;AF=1.00;AN=2;AS_AltDP=49;AS_QD=35.35;BaseQRankSum=2.403;DP=156;ExcessHet=0.0000;FS=0.000;MQ=57.86;MQRankSum=-0.266;QD=42.56;ReadPosRankSum=-1.179;SOR=0.239;VarDP=50 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB .:.:104:0:104:.:.:0,0 1|1:1,49:50:99:.:0|1:1085821_G_A:2128,141,0:1085821:1,0,25,24 +chrX 1085829 . A G 2167 . AC=2;AF=1.00;AN=2;AS_AltDP=51;AS_QD=27.61;DP=161;ExcessHet=0.0000;FS=3.181;MQ=57.65;MQRankSum=-0.3;QD=42.25;SOR=0.408;VarDP=52 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB .:.:107:0:107:.:.:0,0 1|1:1,51:52:99:.:0|1:1085821_G_A:2197,147,0:1085821:1,0,24,27 +chrX 1085881 . T C 1236 . AC=1;AF=0.333;AN=3;AS_AltDP=47;AS_QD=18.09;BaseQRankSum=2.81;DP=205;ExcessHet=0.0000;FS=0.000;MQ=53.12;MQRankSum=1.024;QD=18.09;ReadPosRankSum=2.921;SOR=0.741;VarDP=70 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:132:49:132:0,49 0/1:23,47:70:99:.:1266,0,378:10,13,20,27 +chrX 1086093 . G T 84 . AC=1;AF=0.333;AN=3;AS_AltDP=10;AS_QD=1.50;BaseQRankSum=2.826;DP=209;ExcessHet=0.0000;FS=5.224;MQ=45.49;MQRankSum=-2.715;QD=1.50;ReadPosRankSum=-0.738;SOR=0.852;VarDP=76 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:132:49:132:.:.:0,49 0|1:66,10:76:99:.:0|1:1086093_G_T:114,0,2148:1086093:41,25,4,6 +chrX 1086116 . G A 1067 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=18.28;BaseQRankSum=1.155;DP=199;ExcessHet=0.0000;FS=13.748;MQ=45.59;MQRankSum=-2.646;QD=18.28;ReadPosRankSum=-0.022;SOR=0.727;VarDP=60 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:132:49:132:.:.:0,49 0|1:29,31:60:99:.:0|1:1086116_G_A:1097,0,996:1086116:20,9,13,18 +chrX 1086121 . A G 985 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=18.13;BaseQRankSum=-0.136;DP=193;ExcessHet=0.0000;FS=12.236;MQ=45.38;MQRankSum=-2.889;QD=18.13;ReadPosRankSum=-0.247;SOR=0.916;VarDP=56 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:132:49:132:.:.:0,49 0|1:28,28:56:99:.:0|1:1086116_G_A:1015,0,983:1086116:19,9,11,17 +chrX 1086232 . A T 379 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=19.48;BaseQRankSum=-0.616;DP=154;ExcessHet=0.0000;FS=0.000;MQ=43.69;MQRankSum=-1.077;QD=19.48;ReadPosRankSum=0.224;SOR=0.551;VarDP=21 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:132:49:132:.:.:0,49 0|1:4,17:21:99:.:0|1:1086232_A_T:409,0,129:1086232:1,3,6,11 +chrX 1086233 . T C 379 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=19.48;BaseQRankSum=-0.616;DP=154;ExcessHet=0.0000;FS=0.000;MQ=43.69;MQRankSum=-1.077;QD=19.48;ReadPosRankSum=0.269;SOR=0.551;VarDP=21 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:132:49:132:.:.:0,49 0|1:4,17:21:99:.:0|1:1086232_A_T:409,0,129:1086232:1,3,6,11 +chrX 1086444 . A G 46 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=0.70;BaseQRankSum=0.594;DP=244;ExcessHet=0.0000;FS=4.239;MQ=49.69;MQRankSum=-0.116;QD=0.704;ReadPosRankSum=1.007;SOR=1.322;VarDP=108 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:132:49:132:.:.:0,49 0|1:96,12:108:76:.:0|1:1086444_A_G:76,0,3576:1086444:46,50,4,8 +chrX 1086527 . A T 379 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=3.90;BaseQRankSum=-2.014;DP=241;ExcessHet=0.0000;FS=2.180;MQ=42.87;MQRankSum=-2.455;QD=3.90;ReadPosRankSum=0.336;SOR=1.087;VarDP=105 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:132:49:132:.:.:0,49 0|1:87,18:105:99:.:0|1:1086527_A_T:409,0,3417:1086527:42,45,7,11 +chrX 1086528 . T C 379 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=3.90;BaseQRankSum=-1.758;DP=241;ExcessHet=0.0000;FS=2.180;MQ=42.87;MQRankSum=-2.455;QD=3.90;ReadPosRankSum=0.611;SOR=1.087;VarDP=105 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:132:49:132:.:.:0,49 0|1:87,18:105:99:.:0|1:1086527_A_T:409,0,3417:1086527:42,45,7,11 +chrX 1086657 . G A 419 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=5.91;BaseQRankSum=-0.192;DP=209;ExcessHet=0.0000;FS=15.459;MQ=48.34;MQRankSum=-3.628;QD=5.91;ReadPosRankSum=-0.589;SOR=2.584;VarDP=76 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:132:49:132:.:.:0,49 0|1:58,18:76:99:.:0|1:1086657_G_A:449,0,2149:1086657:27,31,3,15 +chrX 1086683 . T G 202 . AC=1;AF=0.333;AN=3;AS_AltDP=10;AS_QD=3.52;BaseQRankSum=2.008;DP=199;ExcessHet=0.0000;FS=24.502;MQ=52.82;MQRankSum=-4.72;QD=3.52;ReadPosRankSum=-0.48;SOR=4.804;VarDP=66 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:132:49:132:.:.:0,49 0|1:56,10:66:99:.:0|1:1086657_G_A:232,0,2081:1086657:28,28,0,10 +chrX 1086706 . G A 65 . AC=1;AF=0.333;AN=3;AS_AltDP=9;AS_QD=1.46;BaseQRankSum=0.451;DP=197;ExcessHet=0.0000;FS=8.196;MQ=54.27;MQRankSum=-3.938;QD=1.46;ReadPosRankSum=-1.197;SOR=2.147;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:132:49:132:0,49 0/1:56,9:65:95:.:95,0,1561:21,35,1,8 +chrX 1086780 . G A 3784 . AC=3;AF=1.00;AN=3;AS_AltDP=116;AS_QD=32.88;DP=118;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.88;SOR=0.693;VarDP=116 GT:AD:DP:GQ:PL:SB 1:0,59:59:99:1918,0:0,0,31,28 1/1:0,57:57:99:1896,171,0:0,0,27,30 +chrX 1087090 . C T 1742 . AC=1;AF=0.333;AN=3;AS_AltDP=53;AS_QD=33.43;DP=82;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.43;SOR=1.077;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,53:53:99:.:1772,0:0,0,31,22 0/0:.:32:22:27:0,22,808 +chrX 1087227 . G C 212 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=4.25;BaseQRankSum=2.127;DP=85;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=4.25;ReadPosRankSum=-1.154;SOR=0.593;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 1:26,31:57:99:.:242,0:15,11,17,14 0/0:.:32:22:27:0,22,808 +chrX 1087919 . T C 1881 . AC=1;AF=0.333;AN=3;AS_AltDP=57;AS_QD=33.53;DP=86;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.53;SOR=0.728;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,57:57:99:.:1911,0:0,0,29,28 0/0:.:32:22:27:0,22,808 +chrX 1088150 . G A 332 . AC=1;AF=0.333;AN=3;AS_AltDP=48;AS_QD=4.16;BaseQRankSum=0.84;DP=120;ExcessHet=0.0000;FS=0.814;MQ=57.57;MQRankSum=2.639;QD=4.16;ReadPosRankSum=-0.023;SOR=0.542;VarDP=87 GT:AD:DP:GQ:MIN_DP:PL:SB 1:39,48:87:99:.:362,0:17,22,23,25 0/0:.:32:22:27:0,22,808 +chrX 1088173 . A AG 306.97 . AC=1;AF=0.333;AN=3;AS_AltDP=44;AS_QD=4.33;BaseQRankSum=0.871;DP=112;ExcessHet=0.0000;FS=0.840;MQ=57.63;MQRankSum=2.365;QD=4.33;ReadPosRankSum=0.735;SOR=0.577;VarDP=80 GT:AD:DP:GQ:MIN_DP:PL:SB 1:36,44:80:99:.:346,0:16,20,21,23 0/0:.:32:22:27:0,22,808 +chrX 1088175 . A T 3386 . AC=1;AF=0.333;AN=3;AS_AltDP=79;AS_QD=31.98;DP=112;ExcessHet=0.0000;FS=0.000;MQ=57.63;QD=43.24;SOR=0.881;VarDP=79 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,79:79:99:.:3416,0:0,0,36,43 0/0:.:32:22:27:0,22,808 +chrX 1088222 . G A 582 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=11.55;BaseQRankSum=-1.578;DP=84;ExcessHet=0.0000;FS=8.351;MQ=54.74;MQRankSum=4.686;QD=11.55;ReadPosRankSum=1.54;SOR=0.148;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 1:19,34:53:99:.:612,0:14,5,17,17 0/0:.:32:22:27:0,22,808 +chrX 1088238 . A T 2206 . AC=1;AF=0.333;AN=3;AS_AltDP=52;AS_QD=25.65;DP=82;ExcessHet=0.0000;FS=0.000;MQ=55.32;QD=43.00;SOR=0.941;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,52:52:99:.:2236,0:0,0,29,23 0/0:.:32:22:27:0,22,808 +chrX 1088321 . C T 402 . AC=1;AF=0.333;AN=3;AS_AltDP=43;AS_QD=5.47;BaseQRankSum=0.468;DP=110;ExcessHet=0.0000;FS=0.843;MQ=55.79;MQRankSum=-2.93;QD=5.47;ReadPosRankSum=1.575;SOR=0.818;VarDP=79 GT:AD:DP:GQ:MIN_DP:PL:SB 1:36,43:79:99:.:432,0:19,17,24,19 0/0:.:32:22:27:0,22,808 +chrX 1088334 . G A 565 . AC=1;AF=0.333;AN=3;AS_AltDP=51;AS_QD=6.54;BaseQRankSum=0.731;DP=123;ExcessHet=0.0000;FS=0.000;MQ=56.71;MQRankSum=-2.562;QD=6.54;ReadPosRankSum=1.74;SOR=0.691;VarDP=91 GT:AD:DP:GQ:MIN_DP:PL:SB 1:40,51:91:99:.:595,0:22,18,28,23 0/0:.:32:22:27:0,22,808 +chrX 1088342 . T A 1064 . AC=1;AF=0.333;AN=3;AS_AltDP=57;AS_QD=12.29;BaseQRankSum=0.683;DP=122;ExcessHet=0.0000;FS=0.000;MQ=56.74;MQRankSum=-2.152;QD=12.29;ReadPosRankSum=-0.437;SOR=0.747;VarDP=89 GT:AD:DP:GQ:MIN_DP:PL:SB 1:32,57:89:99:.:1094,0:17,15,31,26 0/0:.:32:22:27:0,22,808 +chrX 1088495 . C CT 582.97 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=23.92;DP=67;ExcessHet=0.0000;FS=0.000;MQ=58.74;QD=23.92;SOR=1.220;VarDP=26 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,26:26:99:.:622,0:0,0,10,16 0/0:.:32:22:27:0,22,808 +chrX 1089188 . G T 242 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=5.13;BaseQRankSum=0.179;DP=82;ExcessHet=0.0000;FS=2.347;MQ=60.00;MQRankSum=0;QD=5.13;ReadPosRankSum=-0.361;SOR=0.768;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 1:22,31:53:99:.:272,0:10,12,17,14 0/0:.:32:22:27:0,22,808 +chrX 1091401 . A G 314 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=5.55;BaseQRankSum=-2.111;DP=91;ExcessHet=0.0000;FS=5.201;MQ=59.74;MQRankSum=1.291;QD=5.55;ReadPosRankSum=1.207;SOR=1.093;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 1:24,38:62:99:.:344,0:11,13,23,15 0/0:.:32:22:27:0,22,808 +chrX 1092556 . T C 677 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=12.63;BaseQRankSum=0.022;DP=101;ExcessHet=0.0000;FS=3.859;MQ=59.06;MQRankSum=-1.644;QD=12.63;ReadPosRankSum=-0.329;SOR=1.062;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 1:19,37:56:99:.:707,0:10,9,15,22 0/0:.:32:22:27:0,22,808 +chrX 1093454 . A G 2394 . AC=3;AF=1.00;AN=3;AS_AltDP=84;AS_QD=22.04;BaseQRankSum=-0.149;DP=112;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=22.04;ReadPosRankSum=1.46;SOR=0.791;VarDP=110 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:25,27:52:46:.:.:46,0:.:12,13,13,14 1|1:1,57:58:99:0|1:1093454_A_G:2378,129,0:1093454:1,0,27,30 +chrX 1093476 . C T 2475 . AC=3;AF=1.00;AN=3;AS_AltDP=87;AS_QD=21.78;BaseQRankSum=0.077;DP=118;ExcessHet=0.0000;FS=5.561;MQ=60.00;MQRankSum=0;QD=21.78;ReadPosRankSum=0.986;SOR=0.529;VarDP=115 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:27,28:55:36:.:.:36,0:.:16,11,13,15 1|1:1,59:60:99:0|1:1093454_A_G:2469,135,0:1093454:1,0,28,31 +chrX 1093541 . GA G 1642.97 . AC=3;AF=1.00;AN=3;AS_AltDP=84;AS_QD=15.57;BaseQRankSum=0.501;DP=126;ExcessHet=0.0000;FS=6.166;MQ=59.87;MQRankSum=0;QD=15.57;ReadPosRankSum=-0.637;SOR=0.274;VarDP=108 GT:AD:DP:GQ:PL:SB 1:23,23:46:31:31,0:16,7,14,9 1/1:1,61:62:99:1651,159,0:1,0,33,28 +chrX 1094544 . T TCA 1773.97 . AC=3;AF=1.00;AN=3;AS_AltDP=78;AS_QD=17.43;BaseQRankSum=-0.684;DP=128;ExcessHet=0.0000;FS=9.632;MQ=60.00;MQRankSum=0;QD=17.43;ReadPosRankSum=0.225;SOR=0.196;VarDP=104 GT:AD:DP:GQ:PL:SB 1:26,28:54:37:37,0:7,19,13,15 1/1:0,50:50:99:1776,150,0:0,0,23,27 +chrX 1094592 . G A 1460 . AC=2;AF=0.667;AN=3;AS_AltDP=44;AS_QD=33.86;DP=101;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.86;SOR=0.883;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:49:55:0,49 1/1:0,44:44:99:.:1490,132,0:0,0,20,24 +chrX 1094634 . T C 1845 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=34.72;DP=111;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=34.72;SOR=1.118;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:49:55:0,49 1/1:0,54:54:99:.:1875,162,0:0,0,22,32 +chrX 1094714 . T C 1975 . AC=3;AF=1.00;AN=3;AS_AltDP=91;AS_QD=16.99;BaseQRankSum=-1.075;DP=121;ExcessHet=0.0000;FS=4.139;MQ=60.00;MQRankSum=0;QD=16.99;ReadPosRankSum=-0.064;SOR=0.381;VarDP=118 GT:AD:DP:GQ:PL:SB 1:27,30:57:64:64,0:17,10,15,15 1/1:0,61:61:99:1941,182,0:0,0,33,28 +chrX 1095293 . C T 3735 . AC=3;AF=1.00;AN=3;AS_AltDP=111;AS_QD=33.92;DP=119;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.92;SOR=0.786;VarDP=111 GT:AD:DP:GQ:PL:SB 1:0,56:56:99:1905,0:0,0,27,29 1/1:0,55:55:99:1860,165,0:0,0,26,29 +chrX 1095437 . A G 751 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=13.24;BaseQRankSum=-0.728;DP=126;ExcessHet=0.0000;FS=2.177;MQ=60.00;MQRankSum=0;QD=13.24;ReadPosRankSum=-0.842;SOR=0.555;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,521 0/1:30,29:59:99:.:781,0,821:17,13,14,15 +chrX 1095595 . A G 3998 . AC=3;AF=1.00;AN=3;AS_AltDP=129;AS_QD=31.22;DP=134;ExcessHet=0.0000;FS=0.000;MQ=59.80;QD=31.22;SOR=0.840;VarDP=129 GT:AD:DP:GQ:PL:SB 1:0,66:66:99:2099,0:0,0,36,30 1/1:0,63:63:99:1929,188,0:0,0,33,30 +chrX 1095743 . G A 3140 . AC=3;AF=1.00;AN=3;AS_AltDP=95;AS_QD=33.37;DP=101;ExcessHet=0.0000;FS=0.000;MQ=59.13;QD=33.37;SOR=0.802;VarDP=95 GT:AD:DP:GQ:PL:SB 1:0,46:46:99:1518,0:0,0,23,23 1/1:0,49:49:99:1652,147,0:0,0,22,27 +chrX 1096088 . G A 2955 . AC=3;AF=1.00;AN=3;AS_AltDP=91;AS_QD=32.80;DP=97;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.80;SOR=1.191;VarDP=91 GT:AD:DP:GQ:PL:SB 1:0,52:52:99:1729,0:0,0,34,18 1/1:0,39:39:99:1256,117,0:0,0,21,18 +chrX 1096291 . G A 4843 . AC=3;AF=1.00;AN=3;AS_AltDP=126;AS_QD=31.69;DP=132;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=38.67;SOR=0.862;VarDP=126 GT:AD:DP:GQ:PL:SB 1:0,69:69:99:2788,0:0,0,33,36 1/1:0,57:57:99:2085,171,0:0,0,25,32 +chrX 1096298 . G A 1023 . AC=2;AF=0.667;AN=3;AS_AltDP=65;AS_QD=8.29;BaseQRankSum=2.14;DP=130;ExcessHet=0.0000;FS=3.191;MQ=60.00;MQRankSum=0;QD=8.29;ReadPosRankSum=0.544;SOR=0.877;VarDP=127 GT:AD:DP:GQ:PL:SB 1:29,42:71:99:443,0:15,14,20,22 0/1:33,23:56:99:610,0,869:17,16,9,14 +chrX 1096319 . C T 979 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=17.70;BaseQRankSum=-0.876;DP=117;ExcessHet=0.0000;FS=2.326;MQ=60.00;MQRankSum=0;QD=17.70;ReadPosRankSum=-0.877;SOR=0.602;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:57:99:57:0,485 0/1:21,36:57:99:.:1009,0,523:9,12,19,17 +chrX 1096607 . C T 3488 . AC=3;AF=1.00;AN=3;AS_AltDP=107;AS_QD=32.57;BaseQRankSum=2.317;DP=110;ExcessHet=0.0000;FS=3.613;MQ=59.76;MQRankSum=0;QD=32.57;ReadPosRankSum=1.064;SOR=0.688;VarDP=108 GT:AD:DP:GQ:PL:SB 1:0,51:51:99:1712,0:0,0,29,22 1/1:1,56:57:99:1806,161,0:0,1,32,24 +chrX 1096641 . G A 658 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=13.23;BaseQRankSum=0.193;DP=110;ExcessHet=0.0000;FS=1.090;MQ=59.83;MQRankSum=-0.924;QD=13.23;ReadPosRankSum=0.458;SOR=0.998;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:55:99:55:0,1371 0/1:25,27:52:99:.:688,0,618:14,11,17,10 +chrX 1096900 . C T 4134 . AC=3;AF=1.00;AN=3;AS_AltDP=128;AS_QD=32.53;DP=133;ExcessHet=0.0000;FS=0.000;MQ=59.96;QD=32.53;SOR=0.757;VarDP=128 GT:AD:DP:GQ:PL:SB 1:0,67:67:99:2204,0:0,0,34,33 1/1:0,61:61:99:1960,182,0:0,0,28,33 +chrX 1096983 . A G 3788 . AC=3;AF=1.00;AN=3;AS_AltDP=124;AS_QD=30.79;DP=136;ExcessHet=0.0000;FS=0.000;MQ=59.96;QD=30.79;SOR=1.788;VarDP=124 GT:AD:DP:GQ:PL:SB 1:0,65:65:99:2069,0:0,0,45,20 1/1:0,59:59:99:1749,175,0:0,0,41,18 +chrX 1097313 . A G,T 3163 . AC=3,0;AF=1.00,0.00;AN=3;AS_AltDP=103,2;AS_QD=31.00,22.00;DP=112;ExcessHet=0.0000;FS=0.000;MQ=59.80;QD=30.41;SOR=0.791;VarDP=105 GT:AD:DP:GQ:PL:SB 1:0,46,2:48:99:1419,0,1375:0,0,24,24 1/1:0,57,0:57:99:1774,169,0,1774,169,1774:0,0,26,31 +chrX 1098079 . A ATT 650.97 . AC=2;AF=0.667;AN=3;AS_AltDP=48;AS_QD=7.67;BaseQRankSum=-0.657;DP=111;ExcessHet=0.0000;FS=5.229;MQ=59.66;MQRankSum=-0.85;QD=7.67;ReadPosRankSum=-0.651;SOR=0.671;VarDP=90 GT:AD:DP:GQ:PL:SB 1:20,25:45:95:95,0:8,12,13,12 0/1:22,23:45:99:595,0,630:10,12,13,10 +chrX 1098644 . C G 2968 . AC=3;AF=1.00;AN=3;AS_AltDP=93;AS_QD=32.24;DP=94;ExcessHet=0.0000;FS=0.000;MQ=59.08;QD=32.24;SOR=0.901;VarDP=93 GT:AD:DP:GQ:PL:SB 1:0,51:51:99:1627,0:0,0,27,24 1/1:0,42:42:99:1371,126,0:0,0,24,18 +chrX 1098714 . C G 2921 . AC=3;AF=1.00;AN=3;AS_AltDP=91;AS_QD=32.43;DP=94;ExcessHet=0.0000;FS=0.000;MQ=59.37;QD=32.43;SOR=1.014;VarDP=91 GT:AD:DP:GQ:PL:SB 1:0,45:45:99:1482,0:0,0,24,21 1/1:0,46:46:99:1469,138,0:0,0,28,18 +chrX 1098785 . G A 3519 . AC=3;AF=1.00;AN=3;AS_AltDP=108;AS_QD=32.86;DP=118;ExcessHet=0.0000;FS=0.000;MQ=59.84;QD=32.86;SOR=1.179;VarDP=108 GT:AD:DP:GQ:PL:SB 1:0,52:52:99:1731,0:0,0,33,19 1/1:0,56:56:99:1818,168,0:0,0,32,24 +chrX 1099064 . TA T 262.97 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=7.74;BaseQRankSum=0.696;DP=104;ExcessHet=0.0000;FS=1.237;MQ=60.00;MQRankSum=0;QD=7.74;ReadPosRankSum=0.659;SOR=0.926;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:47:53:0,47 0/1:23,16:39:99:.:302,0,481:10,13,6,10 +chrX 1099285 . G A 716 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=12.23;BaseQRankSum=1.629;DP=117;ExcessHet=0.0000;FS=11.275;MQ=60.00;MQRankSum=0;QD=12.23;ReadPosRankSum=0.405;SOR=0.795;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:47:53:0,47 0/1:32,29:61:99:.:746,0,713:21,11,12,17 +chrX 1099341 . T C 734 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=15.92;BaseQRankSum=0.345;DP=103;ExcessHet=0.0000;FS=10.982;MQ=60.00;MQRankSum=0;QD=15.92;ReadPosRankSum=-0.073;SOR=1.086;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:47:53:0,47 0/1:21,27:48:99:.:764,0,556:7,14,17,10 +chrX 1099763 . G C 1053 . AC=1;AF=0.333;AN=3;AS_AltDP=39;AS_QD=17.47;BaseQRankSum=-0.525;DP=118;ExcessHet=0.0000;FS=5.332;MQ=59.23;MQRankSum=1.88;QD=17.47;ReadPosRankSum=-0.284;SOR=0.731;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:47:53:0,47 0/1:23,39:62:99:.:1083,0,568:9,14,22,17 +chrX 1100147 . A G 530 . AC=2;AF=0.667;AN=3;AS_AltDP=44;AS_QD=6.59;BaseQRankSum=0.112;DP=87;ExcessHet=0.0000;FS=0.814;MQ=60.00;MQRankSum=0;QD=6.59;ReadPosRankSum=1.487;SOR=0.563;VarDP=85 GT:AD:DP:GQ:PL:SB 1:21,27:48:99:130,0:8,13,15,12 0/1:20,17:37:99:430,0,602:14,6,7,10 +chrX 1100375 . T C 646 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=8.35;BaseQRankSum=-0.666;DP=93;ExcessHet=0.0000;FS=0.856;MQ=59.54;MQRankSum=1.163;QD=8.35;ReadPosRankSum=1.142;SOR=0.885;VarDP=81 GT:AD:DP:GQ:PL:SB 1:14,22:36:99:161,0:10,4,12,10 0/1:20,25:45:99:515,0,483:8,12,15,10 +chrX 1100494 . A T 57 . AC=1;AF=0.333;AN=3;AS_AltDP=5;AS_QD=4.14;BaseQRankSum=0.221;DP=84;ExcessHet=0.0000;FS=5.566;MQ=60.00;MQRankSum=0;QD=4.14;ReadPosRankSum=1.074;SOR=2.303;VarDP=21 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:99:60:0,189 0/1:16,5:21:87:.:87,0,423:11,5,5,0 +chrX 1100656 . C CA 334.97 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=9.35;BaseQRankSum=1.643;DP=113;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=9.35;ReadPosRankSum=-1.179;SOR=0.718;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:99:60:0,189 0/1:21,19:40:99:.:374,0,429:11,10,9,10 +chrX 1101357 . G T 640 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=17.18;BaseQRankSum=-1.059;DP=100;ExcessHet=0.0000;FS=0.000;MQ=50.83;MQRankSum=1.531;QD=17.18;ReadPosRankSum=-1.353;SOR=0.885;VarDP=39 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:60:99:60:.:.:0,189 0|1:21,18:39:99:.:0|1:1101357_G_T:670,0,814:1101357:3,18,2,16 +chrX 1101362 . A G 582 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=17.00;BaseQRankSum=-2.309;DP=96;ExcessHet=0.0000;FS=0.000;MQ=50.15;MQRankSum=1.387;QD=17.00;ReadPosRankSum=-1.354;SOR=0.804;VarDP=36 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:60:99:60:.:.:0,189 0|1:20,16:36:99:.:0|1:1101357_G_T:612,0,792:1101357:3,17,2,14 +chrX 1101388 . G C 327 . AC=1;AF=0.333;AN=3;AS_AltDP=10;AS_QD=11.52;BaseQRankSum=-1.872;DP=91;ExcessHet=0.0000;FS=0.000;MQ=47.14;MQRankSum=0.387;QD=11.52;ReadPosRankSum=-0.682;SOR=0.752;VarDP=31 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:60:99:60:.:.:0,189 0|1:21,10:31:99:.:0|1:1101357_G_T:357,0,801:1101357:5,16,2,8 +chrX 1101588 . G C 47 . AC=1;AF=0.333;AN=3;AS_AltDP=3;AS_QD=8.56;BaseQRankSum=0.431;DP=69;ExcessHet=0.0000;FS=3.332;MQ=47.45;MQRankSum=1.981;QD=8.56;ReadPosRankSum=-2.26;SOR=2.833;VarDP=9 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:99:60:0,189 0/1:6,3:9:77:.:77,0,154:3,3,3,0 +chrX 1101893 . C T 888 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=19.13;BaseQRankSum=-2.438;DP=108;ExcessHet=0.0000;FS=0.000;MQ=57.57;MQRankSum=-1.137;QD=19.13;ReadPosRankSum=-0.873;SOR=0.640;VarDP=48 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:60:99:60:.:.:0,189 0|1:21,27:48:99:.:0|1:1101893_C_T:918,0,759:1101893:12,9,15,12 +chrX 1101918 . G A 839 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=18.10;BaseQRankSum=-1.265;DP=108;ExcessHet=0.0000;FS=1.098;MQ=56.99;MQRankSum=-0.523;QD=18.10;ReadPosRankSum=0.547;SOR=0.527;VarDP=48 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:60:99:60:.:.:0,189 0|1:23,25:48:99:.:0|1:1101893_C_T:869,0,819:1101893:14,9,14,11 +chrX 1103446 . A G 1241 . AC=2;AF=0.667;AN=3;AS_AltDP=74;AS_QD=10.68;BaseQRankSum=-1.847;DP=126;ExcessHet=0.0000;FS=2.415;MQ=60.00;MQRankSum=0;QD=10.68;ReadPosRankSum=0.841;SOR=0.698;VarDP=119 GT:AD:DP:GQ:PL:SB 1:24,35:59:99:201,0:12,12,22,13 0/1:21,39:60:99:1070,0,528:9,12,17,22 +chrX 1103650 . C T 1068 . AC=1;AF=0.500;AN=2;AS_AltDP=28;AS_QD=24.40;BaseQRankSum=-0.258;DP=124;ExcessHet=0.0000;FS=1.199;MQ=60.00;MQRankSum=0;QD=24.40;ReadPosRankSum=-1.171;SOR=0.425;VarDP=45 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB .:.:78:0:78:.:.:0,0 0|1:17,28:45:99:.:0|1:1103650_C_T:1098,0,630:1103650:7,10,14,14 +chrX 1103656 . T C 1009 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=24.16;BaseQRankSum=-0.659;DP=122;ExcessHet=0.0000;FS=1.217;MQ=60.00;MQRankSum=0;QD=24.16;ReadPosRankSum=-0.497;SOR=0.425;VarDP=43 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:81:25:78:.:.:0,25 0|1:17,26:43:99:.:0|1:1103650_C_T:1039,0,636:1103650:7,10,13,13 +chrX 1103776 . A C 4630 . AC=3;AF=1.00;AN=3;AS_AltDP=147;AS_QD=31.70;DP=149;ExcessHet=0.0000;FS=0.000;MQ=59.59;QD=31.70;SOR=0.852;VarDP=147 GT:AD:DP:GQ:PL:SB 1:0,81:81:99:2553,0:0,0,41,40 1/1:0,66:66:99:2107,198,0:0,0,38,28 +chrX 1104041 . C G 1899 . AC=1;AF=0.333;AN=3;AS_AltDP=59;AS_QD=32.69;DP=122;ExcessHet=0.0000;FS=0.000;MQ=59.94;QD=32.69;SOR=1.773;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,59:59:99:.:1929,0:0,0,18,41 0/0:.:59:65:59:0,65,1534 +chrX 1104392 . A G 250 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=4.12;BaseQRankSum=0.427;DP=130;ExcessHet=0.0000;FS=0.928;MQ=59.86;MQRankSum=0.147;QD=4.12;ReadPosRankSum=0.24;SOR=0.910;VarDP=68 GT:AD:DP:GQ:MIN_DP:PL:SB 1:31,37:68:99:.:280,0:16,15,21,16 0/0:.:59:65:59:0,65,1534 +chrX 1104697 . A G 2334 . AC=2;AF=0.667;AN=3;AS_AltDP=79;AS_QD=20.74;BaseQRankSum=2.436;DP=119;ExcessHet=0.0000;FS=1.619;MQ=60.00;MQRankSum=0;QD=20.74;ReadPosRankSum=1.4;SOR=0.876;VarDP=114 GT:AD:DP:GQ:PL:SB 1:1,56:57:99:1766,0:1,0,31,25 0/1:34,23:57:99:598,0,929:17,17,13,10 +chrX 1104816 . TATAA T 4136.97 . AC=2;AF=0.667;AN=3;AS_AltDP=100;AS_QD=29.83;BaseQRankSum=-0.434;DP=151;ExcessHet=0.0000;FS=4.530;MQ=60.00;MQRankSum=0;QD=29.83;ReadPosRankSum=0.511;SOR=0.550;VarDP=140 GT:AD:DP:GQ:PL:SB 1:1,77:78:99:3386,0:0,1,38,39 0/1:39,23:62:99:790,0,1516:17,22,14,9 +chrX 1105099 . A G 1050 . AC=2;AF=0.667;AN=3;AS_AltDP=75;AS_QD=7.71;BaseQRankSum=-1.217;DP=148;ExcessHet=0.0000;FS=4.021;MQ=59.97;MQRankSum=1.122;QD=7.71;ReadPosRankSum=0.443;SOR=1.052;VarDP=140 GT:AD:DP:GQ:PL:SB 1:31,37:68:71:71,0:17,14,23,14 0/1:34,38:72:99:1009,0,909:16,18,21,17 +chrX 1105264 . A C 712 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=13.49;BaseQRankSum=0.013;DP=127;ExcessHet=0.0000;FS=3.749;MQ=60.00;MQRankSum=0;QD=13.49;ReadPosRankSum=-0.969;SOR=1.138;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:70:99:70:0,490 0/1:27,28:55:99:.:742,0,724:14,13,11,17 +chrX 1105518 . G A 1073 . AC=2;AF=0.667;AN=3;AS_AltDP=66;AS_QD=9.59;BaseQRankSum=-0.356;DP=119;ExcessHet=0.0000;FS=2.477;MQ=60.00;MQRankSum=0;QD=9.59;ReadPosRankSum=-0.36;SOR=1.015;VarDP=115 GT:AD:DP:GQ:PL:SB 1:27,38:65:99:304,0:11,16,25,13 0/1:22,28:50:99:799,0,604:16,6,16,12 +chrX 1105690 . C G 1950 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=33.00;DP=129;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.00;SOR=0.986;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,213 1/1:0,60:60:99:.:1980,180,0:0,0,26,34 +chrX 1106001 . T C 695 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=13.68;BaseQRankSum=1.764;DP=118;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.68;ReadPosRankSum=-0.756;SOR=0.631;VarDP=53 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:64:99:64:.:.:0,213 0|1:27,26:53:99:.:0|1:1106001_T_C:725,0,709:1106001:12,15,12,14 +chrX 1106050 . G C 3898 . AC=3;AF=1.00;AN=3;AS_AltDP=90;AS_QD=33.80;DP=91;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.64;SOR=0.784;VarDP=90 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,41:41:99:.:.:1777,0:.:0,0,23,18 1|1:0,49:49:99:0|1:1106001_T_C:2151,147,0:1106001:0,0,20,29 +chrX 1106057 . AGAG A 3771.97 . AC=3;AF=1.00;AN=3;AS_AltDP=87;AS_QD=28.45;DP=88;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.80;SOR=0.763;VarDP=87 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,39:39:99:.:.:1708,0:.:0,0,22,17 1|1:0,48:48:99:0|1:1106001_T_C:2103,144,0:1106001:0,0,20,28 +chrX 1106379 . A AAG 3053.97 . AC=3;AF=1.00;AN=3;AS_AltDP=78;AS_QD=27.01;BaseQRankSum=-0.86;DP=98;ExcessHet=0.0000;FS=3.066;MQ=59.14;MQRankSum=-0.129;QD=39.15;ReadPosRankSum=-0.65;SOR=0.304;VarDP=79 GT:AD:DP:GQ:PL:SB 1:0,47:47:99:1895,0:0,0,22,25 1/1:1,31:32:55:1198,55,0:1,0,16,15 +chrX 1106507 . G A 469 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=14.68;BaseQRankSum=-1.123;DP=90;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.68;ReadPosRankSum=-0.904;SOR=0.560;VarDP=34 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:55:99:55:0,189 0/1:13,21:34:99:.:499,0,316:8,5,12,9 +chrX 1106604 . A AAGAG 37.97 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=2.57;BaseQRankSum=0.804;DP=72;ExcessHet=0.0000;FS=1.415;MQ=59.75;MQRankSum=-0.869;QD=2.57;ReadPosRankSum=-0.937;SOR=0.446;VarDP=30 GT:AD:DP:GQ:MIN_DP:PL:SB 1:14,16:30:77:.:77,0:9,5,9,7 0/0:.:39:32:32:0,32,834 +chrX 1106916 . A G,T 1245 . AC=0,2;AF=0.00,0.667;AN=3;AS_AltDP=6,40;AS_QD=11.14,31.10;BaseQRankSum=1.189;DP=94;ExcessHet=0.0000;FS=0.000;MQ=59.89;MQRankSum=0;QD=27.13;ReadPosRankSum=0.664;SOR=0.223;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:43:60:42:0,60,60 2/2:1,6,40:47:48:.:1275,1206,1197,113,48,0:1,0,23,23 +chrX 1106972 . G A 430 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=9.02;BaseQRankSum=0.157;DP=95;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=9.02;ReadPosRankSum=0.38;SOR=0.671;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:43:60:42:0,60 0/1:32,19:51:99:.:460,0,850:17,15,10,9 +chrX 1107115 . C T 74 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=2.31;BaseQRankSum=0.193;DP=103;ExcessHet=0.0000;FS=2.561;MQ=60.00;MQRankSum=0;QD=2.31;ReadPosRankSum=-0.922;SOR=0.669;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 1:21,24:45:99:.:104,0:12,9,11,13 0/0:.:57:63:57:0,63,1190 +chrX 1107197 . T G 163 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=3.78;BaseQRankSum=-2.012;DP=108;ExcessHet=0.0000;FS=10.488;MQ=60.00;MQRankSum=0;QD=3.78;ReadPosRankSum=-1.027;SOR=0.773;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 1:22,29:51:99:.:193,0:15,7,12,17 0/0:.:57:63:57:0,63,1190 +chrX 1107893 . G C 2471 . AC=1;AF=0.333;AN=3;AS_AltDP=76;AS_QD=32.91;DP=133;ExcessHet=0.0000;FS=0.000;MQ=59.94;QD=32.91;SOR=1.121;VarDP=76 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,76:76:99:.:2501,0:0,0,45,31 0/0:.:57:63:57:0,63,1190 +chrX 1107922 . G C 2128 . AC=1;AF=0.333;AN=3;AS_AltDP=68;AS_QD=31.74;DP=127;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.74;SOR=0.814;VarDP=68 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,68:68:99:.:2158,0:0,0,36,32 0/0:.:57:63:57:0,63,1190 +chrX 1109012 . G A 2360 . AC=1;AF=0.333;AN=3;AS_AltDP=55;AS_QD=28.41;DP=114;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.45;SOR=1.262;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,55:55:99:.:2390,0:0,0,34,21 0/0:.:57:63:57:0,63,1190 +chrX 1109019 . G C 2360 . AC=1;AF=0.333;AN=3;AS_AltDP=55;AS_QD=33.52;DP=112;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.45;SOR=1.159;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,55:55:99:.:2390,0:0,0,33,22 0/0:.:57:63:57:0,63,1190 +chrX 1109095 . C T 2162 . AC=1;AF=0.333;AN=3;AS_AltDP=56;AS_QD=31.52;DP=116;ExcessHet=0.0000;FS=0.000;MQ=59.80;QD=39.14;SOR=0.922;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,56:56:99:.:2192,0:0,0,31,25 0/0:.:57:63:57:0,63,1190 +chrX 1109463 . C CAAGA 694.97 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=20.97;BaseQRankSum=0.422;DP=97;ExcessHet=0.0000;FS=1.478;MQ=60.00;MQRankSum=0;QD=20.97;ReadPosRankSum=0.404;SOR=0.458;VarDP=35 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:35:50:0,35 0/1:14,21:35:99:.:734,0,461:11,3,15,6 +chrX 1109608 . GGGAA G 389.97 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=10.46;BaseQRankSum=0.235;DP=101;ExcessHet=0.0000;FS=6.747;MQ=59.45;MQRankSum=1.367;QD=10.46;ReadPosRankSum=-0.432;SOR=1.057;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 1:15,26:41:99:.:429,0:9,6,10,16 0/0:.:64:37:56:0,37,874 +chrX 1109622 . T G,TGAAAGGAAAGGAAGGAAAG 1473 . AC=1,0;AF=0.333,0.00;AN=3;AS_AltDP=28,14;AS_QD=30.65,29.24;DP=104;ExcessHet=0.0000;FS=0.000;MQ=58.99;QD=35.79;SOR=0.788;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,28,14:42:99:.:1503,0,655:0,0,20,22 0/0:.:64:37:56:0,37,874,37,874,874 +chrX 1110351 . GTC G 311.97 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=6.16;BaseQRankSum=2.052;DP=122;ExcessHet=0.0000;FS=2.245;MQ=60.00;MQRankSum=0;QD=6.16;ReadPosRankSum=-0.889;SOR=0.763;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 1:24,33:57:99:.:351,0:11,13,18,15 0/0:.:64:37:56:0,37,874 +chrX 1110509 . A ATGCATGCTAGTGTGTGTGTATGTAGGCATCTGTGTGTACGCATGCTAGTATATGTGAACACACGTGTATGTGCATGAATACTAGTGTGTTTATGTATGTGTGTATGTAGGCGTCTGTGTGTATGCATCTGTATCTGTGCATGCATGCTAGTGTGTTTGTGTGCACATGGGTG,ATGCATGCTAGTGTGTGTGTATGTAGGCATCTGTGTGTATGCATGCTAGTATATGTGAACACACGTGTATGTGCATGAATACTAGTGTGTTTATGTATGTGTGTATGTAGGCGTCTGTGTGTATGCATCTGTATCTGTGCATGCATGCTAGTGTGTTTGTGTGCACATGGGTG,ATGCATGCTAGTGTGTGTGTATGTAGGCATCTGTGTGTATGCATGCTAGTATATGTGAACACACGTGTATGTGCATGAATACTAGGGTGTTTATGTATGTGTGTATGTAGGCGTCTGTGTGTATGCATCTGTATCTGTGCATGCATGCTAGTGTGTTTGTGTGCACATGGGTG 6092.97 . AC=0,1,2;AF=0.00,0.333,0.667;AN=3;AS_AltDP=14,17,81;AS_QD=29.76,32.91,28.12;BaseQRankSum=0.16;DP=184;ExcessHet=0.0000;FS=2.930;MQ=58.78;MQRankSum=-1.021;QD=50.26;ReadPosRankSum=0.355;SOR=0.286;VarDP=122 GT:AD:DP:GQ:PL:SB 2:0,14,17,0:31:99:2685,119,0,2756:0,0,10,21 3/3:10,0,0,81:91:99:3447,3460,3479,3460,3479,3479,223,243,243,0:3,7,42,39 +chrX 1110562 . T C 261 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=5.71;BaseQRankSum=-1.029;DP=110;ExcessHet=0.0000;FS=4.281;MQ=60.00;MQRankSum=0;QD=5.71;ReadPosRankSum=1.573;SOR=0.287;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 1:20,31:51:99:.:291,0:15,5,19,12 0/0:.:46:95:46:0,95,1240 +chrX 1110980 . G A 124 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=2.57;BaseQRankSum=-0.82;DP=113;ExcessHet=0.0000;FS=3.878;MQ=59.71;MQRankSum=0;QD=2.57;ReadPosRankSum=-0.401;SOR=0.283;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 1:27,33:60:99:.:154,0:7,20,13,20 0/0:.:41:26:40:0,26,1091 +chrX 1111650 . G GGA 2143.97 . AC=1;AF=0.333;AN=3;AS_AltDP=56;AS_QD=30.34;DP=103;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=38.98;SOR=1.101;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,56:56:99:.:2183,0:0,0,33,23 0/0:.:41:26:40:0,26,1091 +chrX 1112120 . G GC 420.97 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=14.38;BaseQRankSum=-0.186;DP=96;ExcessHet=0.0000;FS=1.393;MQ=60.00;MQRankSum=0;QD=14.38;ReadPosRankSum=0.548;SOR=1.022;VarDP=32 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:58:99:58:0,769 0/1:17,15:32:99:.:460,0,477:10,7,10,5 +chrX 1112283 . A G 2656 . AC=2;AF=0.667;AN=3;AS_AltDP=89;AS_QD=23.16;BaseQRankSum=-0.951;DP=121;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=23.16;ReadPosRankSum=-0.009;SOR=0.690;VarDP=116 GT:AD:DP:GQ:PL:SB 1:0,62:62:99:1994,0:0,0,32,30 0/1:27,27:54:99:692,0,722:13,14,11,16 +chrX 1112297 . T C 2761 . AC=2;AF=0.667;AN=3;AS_AltDP=92;AS_QD=22.51;BaseQRankSum=2.038;DP=131;ExcessHet=0.0000;FS=1.675;MQ=60.00;MQRankSum=0;QD=22.51;ReadPosRankSum=1.733;SOR=0.484;VarDP=124 GT:AD:DP:GQ:PL:SB 1:1,64:65:99:2075,0:1,0,32,29 0/1:31,28:59:99:716,0,845:17,14,12,15 +chrX 1112674 . G A 690 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=13.58;BaseQRankSum=0.159;DP=123;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.58;ReadPosRankSum=0.142;SOR=0.765;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:99:66:0,1355 0/1:26,27:53:99:.:720,0,670:13,13,14,13 +chrX 1112749 . G A 797 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=8.44;BaseQRankSum=0.622;DP=102;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=8.44;ReadPosRankSum=1.681;SOR=0.690;VarDP=98 GT:AD:DP:GQ:PL:SB 1:20,23:43:99:114,0:10,10,13,10 0/1:27,28:55:99:713,0,712:14,13,13,15 +chrX 1113022 . G A 881 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=8.21;BaseQRankSum=0.98;DP=118;ExcessHet=0.0000;FS=3.475;MQ=59.92;MQRankSum=1.137;QD=8.21;ReadPosRankSum=0.554;SOR=0.629;VarDP=111 GT:AD:DP:GQ:PL:SB 1:24,29:53:99:143,0:8,16,13,16 0/1:30,28:58:99:768,0,808:16,14,17,11 +chrX 1113049 . C G 620 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=6.57;BaseQRankSum=0.016;DP=105;ExcessHet=0.0000;FS=6.386;MQ=59.80;MQRankSum=1.135;QD=6.57;ReadPosRankSum=-1.104;SOR=0.399;VarDP=99 GT:AD:DP:GQ:PL:SB 1:21,25:46:99:144,0:5,16,9,16 0/1:31,22:53:99:506,0,844:15,16,15,7 +chrX 1113116 . G A 822 . AC=2;AF=0.667;AN=3;AS_AltDP=48;AS_QD=8.35;BaseQRankSum=2.664;DP=106;ExcessHet=0.0000;FS=7.863;MQ=59.81;MQRankSum=1.171;QD=8.35;ReadPosRankSum=1.196;SOR=1.426;VarDP=102 GT:AD:DP:GQ:PL:SB 1:19,24:43:99:224,0:8,11,9,15 0/1:35,24:59:99:628,0,898:19,16,8,16 +chrX 1113143 . A G 737 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=13.46;BaseQRankSum=0.602;DP=107;ExcessHet=0.0000;FS=3.657;MQ=60.00;MQRankSum=0;QD=13.46;ReadPosRankSum=-0.319;SOR=0.987;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:49:16:49:0,16 0/1:28,29:57:99:.:767,0,678:15,13,12,17 +chrX 1113288 . A G 84 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=2.48;BaseQRankSum=-0.985;DP=107;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=2.48;ReadPosRankSum=0.463;SOR=0.786;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 1:21,25:46:99:.:114,0:13,8,16,9 0/0:.:59:99:59:0,104,1216 +chrX 1113440 . G A 105 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=2.65;BaseQRankSum=1.3;DP=112;ExcessHet=0.0000;FS=1.078;MQ=60.00;MQRankSum=0;QD=2.65;ReadPosRankSum=0.472;SOR=0.892;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 1:24,27:51:99:.:135,0:10,14,10,17 0/0:.:59:99:59:0,104,1216 +chrX 1114047 . C T 2242 . AC=3;AF=1.00;AN=3;AS_AltDP=102;AS_QD=16.83;BaseQRankSum=1.693;DP=140;ExcessHet=0.0000;FS=1.597;MQ=59.22;MQRankSum=-1.741;QD=16.83;ReadPosRankSum=1.608;SOR=0.536;VarDP=135 GT:AD:DP:GQ:PL:SB 1:33,33:66:10:10,0:15,18,13,20 1/1:0,69:69:99:2262,207,0:0,0,38,31 +chrX 1114061 . C G 3055 . AC=3;AF=1.00;AN=3;AS_AltDP=103;AS_QD=22.68;BaseQRankSum=-0.549;DP=138;ExcessHet=0.0000;FS=0.746;MQ=59.21;MQRankSum=-0.283;QD=22.68;ReadPosRankSum=1.171;SOR=0.585;VarDP=136 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:32,33:65:34:.:.:34,0:.:15,17,13,20 1|1:1,70:71:99:0|1:1114061_C_G:3051,169,0:1114061:0,1,37,33 +chrX 1114065 . A G 3055 . AC=3;AF=1.00;AN=3;AS_AltDP=103;AS_QD=22.68;BaseQRankSum=-0.558;DP=137;ExcessHet=0.0000;FS=0.746;MQ=59.20;MQRankSum=-0.283;QD=22.68;ReadPosRankSum=1.189;SOR=0.585;VarDP=136 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:32,33:65:34:.:.:34,0:.:15,17,13,20 1|1:1,70:71:99:0|1:1114061_C_G:3051,169,0:1114061:0,1,37,33 +chrX 1114244 . G A 111 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=3.92;BaseQRankSum=1.98;DP=103;ExcessHet=0.0000;FS=0.000;MQ=59.20;MQRankSum=0.16;QD=3.92;ReadPosRankSum=1.141;SOR=0.683;VarDP=36 GT:AD:DP:GQ:MIN_DP:PL:SB 1:17,19:36:99:.:141,0:9,8,10,9 0/0:.:65:41:65:0,41,849 +chrX 1114555 . A T 1765 . AC=3;AF=1.00;AN=3;AS_AltDP=83;AS_QD=17.10;BaseQRankSum=0.218;DP=113;ExcessHet=0.0000;FS=0.000;MQ=59.85;MQRankSum=0;QD=17.10;ReadPosRankSum=-0.077;SOR=0.638;VarDP=105 GT:AD:DP:GQ:PL:SB 1:22,26:48:69:69,0:10,11,14,11 1/1:0,57:57:99:1726,171,0:0,0,25,27 +chrX 1114669 . A G 52 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=1.74;BaseQRankSum=0.389;DP=108;ExcessHet=0.0000;FS=8.452;MQ=54.20;MQRankSum=-4.054;QD=1.74;ReadPosRankSum=1.44;SOR=0.595;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 1:22,25:47:82:.:82,0:7,15,14,11 0/0:.:67:29:60:0,29,1420 +chrX 1115159 . T C 755 . AC=1;AF=0.333;AN=3;AS_AltDP=49;AS_QD=10.47;BaseQRankSum=1.711;DP=138;ExcessHet=0.0000;FS=0.933;MQ=60.00;MQRankSum=0;QD=10.47;ReadPosRankSum=-0.423;SOR=0.929;VarDP=75 GT:AD:DP:GQ:MIN_DP:PL:SB 1:26,49:75:99:.:785,0:14,12,29,20 0/0:.:67:29:60:0,29,1420 +chrX 1115793 . T A 280 . AC=1;AF=0.333;AN=3;AS_AltDP=43;AS_QD=4.19;BaseQRankSum=-2.125;DP=118;ExcessHet=0.0000;FS=11.968;MQ=60.00;MQRankSum=0;QD=4.19;ReadPosRankSum=0.926;SOR=0.788;VarDP=74 GT:AD:DP:GQ:MIN_DP:PL:SB 1:31,43:74:99:.:310,0:20,11,18,25 0/0:.:49:29:42:0,29,1067 +chrX 1115991 . T C 138 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=2.40;BaseQRankSum=-0.93;DP=115;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=2.40;ReadPosRankSum=-0.248;SOR=0.706;VarDP=70 GT:AD:DP:GQ:MIN_DP:PL:SB 1:32,38:70:99:.:168,0:21,11,25,13 0/0:.:49:29:42:0,29,1067 +chrX 1116051 . G A 149 . AC=1;AF=0.333;AN=3;AS_AltDP=40;AS_QD=2.36;BaseQRankSum=0.675;DP=120;ExcessHet=0.0000;FS=1.872;MQ=60.00;MQRankSum=0;QD=2.36;ReadPosRankSum=-0.151;SOR=0.495;VarDP=76 GT:AD:DP:GQ:MIN_DP:PL:SB 1:36,40:76:99:.:179,0:21,15,21,19 0/0:.:49:29:42:0,29,1067 +chrX 1118282 . G C 576 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=12.63;BaseQRankSum=0.588;DP=113;ExcessHet=0.0000;FS=1.121;MQ=60.00;MQRankSum=0;QD=12.63;ReadPosRankSum=-0.67;SOR=0.430;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,1153 0/1:24,24:48:99:.:606,0,585:14,10,12,12 +chrX 1118471 . G T 658 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=12.51;BaseQRankSum=-0.911;DP=120;ExcessHet=0.0000;FS=3.743;MQ=59.58;MQRankSum=0.983;QD=12.51;ReadPosRankSum=-0.987;SOR=0.336;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,1153 0/1:29,26:55:99:.:688,0,809:18,11,13,13 +chrX 1118571 . A G 807 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=16.74;BaseQRankSum=-0.312;DP=116;ExcessHet=0.0000;FS=16.649;MQ=59.69;MQRankSum=1.001;QD=16.74;ReadPosRankSum=-0.888;SOR=1.001;VarDP=50 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:99:62:.:.:0,1153 0|1:26,24:50:99:.:0|1:1118571_A_G:837,0,926:1118571:7,19,15,9 +chrX 1118600 . AG A 762.97 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=18.23;BaseQRankSum=-0.672;DP=107;ExcessHet=0.0000;FS=17.187;MQ=59.63;MQRankSum=1.001;QD=18.23;ReadPosRankSum=-1.587;SOR=1.712;VarDP=44 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:99:62:.:.:0,1153 0|1:23,21:44:99:.:0|1:1118571_A_G:802,0,903:1118571:8,15,15,6 +chrX 1118602 . AG A 762.97 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=18.23;BaseQRankSum=0.197;DP=107;ExcessHet=0.0000;FS=17.187;MQ=59.63;MQRankSum=1.001;QD=18.23;ReadPosRankSum=-1.133;SOR=1.712;VarDP=44 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:99:62:.:.:0,1153 0|1:23,21:44:99:.:0|1:1118571_A_G:802,0,903:1118571:8,15,15,6 +chrX 1118628 . A G 572 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=15.44;BaseQRankSum=-2.362;DP=102;ExcessHet=0.0000;FS=6.869;MQ=59.58;MQRankSum=0.931;QD=15.44;ReadPosRankSum=1.396;SOR=0.811;VarDP=39 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:99:62:.:.:0,1153 0|1:22,17:39:99:.:0|1:1118571_A_G:602,0,840:1118571:8,14,10,7 +chrX 1118748 . AAAG A 353.97 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=13.10;BaseQRankSum=1.689;DP=94;ExcessHet=0.0000;FS=1.497;MQ=60.00;MQRankSum=0;QD=13.10;ReadPosRankSum=0.944;SOR=1.136;VarDP=30 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,1153 0/1:19,11:30:99:.:393,0,409:10,9,7,4 +chrX 1119093 . AT A 487.97 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=10.54;BaseQRankSum=-0.221;DP=118;ExcessHet=0.0000;FS=3.899;MQ=60.00;MQRankSum=0;QD=10.54;ReadPosRankSum=-1.35;SOR=1.270;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,1153 0/1:26,24:50:99:.:527,0,559:13,13,15,9 +chrX 1119370 . GT G 458.97 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=10.60;BaseQRankSum=-1.358;DP=116;ExcessHet=0.0000;FS=6.121;MQ=60.00;MQRankSum=0;QD=10.60;ReadPosRankSum=1.917;SOR=1.360;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,1153 0/1:24,23:47:99:.:498,0,599:13,11,8,15 +chrX 1119648 . AG A 2949.97 . AC=2;AF=0.667;AN=3;AS_AltDP=88;AS_QD=27.68;BaseQRankSum=1.204;DP=116;ExcessHet=0.0000;FS=2.081;MQ=60.00;MQRankSum=0;QD=27.68;ReadPosRankSum=0.234;SOR=1.055;VarDP=108 GT:AD:DP:GQ:PL:SB 1:0,59:59:99:2102,0:0,0,36,23 0/1:20,29:49:99:887,0,564:10,10,15,14 +chrX 1119905 . A AT 1459.97 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=17.03;BaseQRankSum=-0.325;DP=109;ExcessHet=0.0000;FS=0.909;MQ=59.67;MQRankSum=0;QD=17.03;ReadPosRankSum=-1.394;SOR=0.892;VarDP=88 GT:AD:DP:GQ:PL:SB 1:1,45:46:99:1154,0:1,0,29,16 0/1:24,18:42:99:345,0,510:13,11,9,9 +chrX 1119939 . A G 1675 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=19.60;BaseQRankSum=1.029;DP=94;ExcessHet=0.0000;FS=1.959;MQ=59.95;MQRankSum=0;QD=19.60;ReadPosRankSum=0.963;SOR=0.573;VarDP=87 GT:AD:DP:GQ:PL:SB 1:0,46:46:99:1317,0:0,0,23,23 0/1:25,16:41:99:388,0,656:14,11,7,9 +chrX 1120163 . GTC G 2971.97 . AC=2;AF=0.667;AN=3;AS_AltDP=75;AS_QD=29.52;BaseQRankSum=-1.591;DP=110;ExcessHet=0.0000;FS=1.829;MQ=59.91;MQRankSum=0;QD=29.52;ReadPosRankSum=-2.451;SOR=0.539;VarDP=102 GT:AD:DP:GQ:PL:SB 1:0,47:47:99:1982,0:0,0,21,26 0/1:27,28:55:99:1029,0,967:15,12,16,12 +chrX 1120279 . C T 2718 . AC=2;AF=0.667;AN=3;AS_AltDP=87;AS_QD=26.17;BaseQRankSum=1.099;DP=109;ExcessHet=0.0000;FS=0.971;MQ=60.00;MQRankSum=0;QD=26.17;ReadPosRankSum=0.115;SOR=0.863;VarDP=105 GT:AD:DP:GQ:PL:SB 1:0,53:53:99:1792,0:0,0,24,29 0/1:18,34:52:99:956,0,395:9,9,23,11 +chrX 1120586 . C G 2935 . AC=2;AF=0.667;AN=3;AS_AltDP=95;AS_QD=26.71;BaseQRankSum=2.736;DP=115;ExcessHet=0.0000;FS=2.332;MQ=60.00;MQRankSum=0;QD=26.71;ReadPosRankSum=0.783;SOR=0.411;VarDP=111 GT:AD:DP:GQ:PL:SB 1:1,65:66:99:2099,0:0,1,26,39 0/1:15,30:45:99:866,0,386:5,10,13,17 +chrX 1121022 . G A 2719 . AC=2;AF=0.667;AN=3;AS_AltDP=90;AS_QD=25.45;BaseQRankSum=-2.018;DP=115;ExcessHet=0.0000;FS=1.010;MQ=60.00;MQRankSum=0;QD=25.45;ReadPosRankSum=-0.36;SOR=0.532;VarDP=108 GT:AD:DP:GQ:PL:SB 1:0,52:52:99:1767,0:0,0,32,20 0/1:18,38:56:99:982,0,427:12,6,23,15 +chrX 1121217 . G A 2408 . AC=2;AF=0.667;AN=3;AS_AltDP=82;AS_QD=22.16;BaseQRankSum=2.123;DP=122;ExcessHet=0.0000;FS=1.806;MQ=59.44;MQRankSum=0;QD=22.16;ReadPosRankSum=0.744;SOR=0.665;VarDP=110 GT:AD:DP:GQ:PL:SB 1:1,45:46:99:1399,0:1,0,16,18 0/1:27,37:64:99:1039,0,657:14,13,18,19 +chrX 1121266 . A G 2449 . AC=2;AF=0.667;AN=3;AS_AltDP=69;AS_QD=28.83;BaseQRankSum=-1.245;DP=110;ExcessHet=0.0000;FS=0.000;MQ=59.53;MQRankSum=0;QD=28.83;ReadPosRankSum=0.786;SOR=0.625;VarDP=86 GT:AD:DP:GQ:PL:SB 1:0,39:39:99:1722,0:0,0,18,21 0/1:17,30:47:99:757,0,421:8,9,17,13 +chrX 1121270 . G A 1726 . AC=1;AF=0.333;AN=3;AS_AltDP=40;AS_QD=30.24;DP=118;ExcessHet=0.0000;FS=0.000;MQ=59.17;QD=43.90;SOR=0.793;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,40:40:99:.:1756,0:0,0,19,21 0/0:.:56:99:56:0,104,1513 +chrX 1121739 . A C 2804 . AC=2;AF=0.667;AN=3;AS_AltDP=92;AS_QD=24.02;BaseQRankSum=-1.792;DP=120;ExcessHet=0.0000;FS=1.859;MQ=60.00;MQRankSum=0;QD=24.02;ReadPosRankSum=0.657;SOR=1.023;VarDP=118 GT:AD:DP:GQ:PL:SB 1:0,60:60:99:2011,0:0,0,40,20 0/1:26,32:58:99:823,0,699:14,12,16,16 +chrX 1121932 . C T 3063 . AC=2;AF=0.667;AN=3;AS_AltDP=98;AS_QD=24.94;BaseQRankSum=3.359;DP=128;ExcessHet=0.0000;FS=4.192;MQ=59.87;MQRankSum=0;QD=24.94;ReadPosRankSum=0.704;SOR=0.379;VarDP=124 GT:AD:DP:GQ:PL:SB 1:0,66:66:99:2154,0:0,0,27,39 0/1:26,32:58:99:939,0,634:9,17,17,15 +chrX 1122546 . C A 3000 . AC=2;AF=0.667;AN=3;AS_AltDP=95;AS_QD=26.12;BaseQRankSum=-1.522;DP=117;ExcessHet=0.0000;FS=0.918;MQ=60.00;MQRankSum=0;QD=26.12;ReadPosRankSum=0.451;SOR=0.892;VarDP=116 GT:AD:DP:GQ:PL:SB 1:0,61:61:99:2079,0:0,0,32,29 0/1:21,34:55:99:951,0,545:11,10,22,12 +chrX 1123776 . C G 2523 . AC=2;AF=0.667;AN=3;AS_AltDP=86;AS_QD=24.08;BaseQRankSum=1.234;DP=108;ExcessHet=0.0000;FS=3.609;MQ=59.96;MQRankSum=0;QD=24.08;ReadPosRankSum=1.347;SOR=0.330;VarDP=106 GT:AD:DP:GQ:PL:SB 1:2,54:56:99:1676,0:0,2,33,21 0/1:18,32:50:99:877,0,467:15,3,21,11 +chrX 1124514 . CACGT C 1973.97 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=22.62;BaseQRankSum=-0.424;DP=112;ExcessHet=0.0000;FS=1.856;MQ=60.00;MQRankSum=0;QD=22.62;ReadPosRankSum=0.986;SOR=0.507;VarDP=89 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,47:48:99:.:.:1609,0:.:1,0,28,19 0|1:26,15:41:99:0|1:1124514_CACGT_C:404,0,990:1124514:14,12,3,12 +chrX 1125142 . TTAGA T 3293.97 . AC=2;AF=0.667;AN=3;AS_AltDP=77;AS_QD=33.67;BaseQRankSum=0.218;DP=119;ExcessHet=0.0000;FS=3.350;MQ=59.95;MQRankSum=0;QD=33.67;ReadPosRankSum=-0.176;SOR=1.223;VarDP=99 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,60:60:99:.:.:2693,0:.:0,0,40,20 0|1:22,17:39:99:0|1:1125142_TTAGA_T:640,0,872:1125142:11,11,7,10 +chrX 1125214 . TAGAC T 3101.97 . AC=2;AF=0.667;AN=3;AS_AltDP=73;AS_QD=31.41;BaseQRankSum=-0.5;DP=103;ExcessHet=0.0000;FS=4.311;MQ=59.94;MQRankSum=0;QD=31.41;ReadPosRankSum=0.867;SOR=1.060;VarDP=100 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,52:52:99:.:.:2340,0:.:0,0,34,18 0|1:27,21:48:99:0|1:1125142_TTAGA_T:801,0,1064:1125142:13,14,9,12 +chrX 1125260 . C CATAG 1946.97 . AC=1;AF=0.333;AN=3;AS_AltDP=46;AS_QD=23.94;DP=86;ExcessHet=0.0000;FS=0.000;MQ=59.88;QD=43.17;SOR=0.874;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,46:46:99:.:1986,0:0,0,25,21 0/0:.:38:48:38:0,48,933 +chrX 1125296 . TGATA T 3024.97 . AC=2;AF=0.667;AN=3;AS_AltDP=72;AS_QD=27.51;BaseQRankSum=-1.116;DP=94;ExcessHet=0.0000;FS=0.000;MQ=59.47;MQRankSum=-0.807;QD=36.05;ReadPosRankSum=1.116;SOR=0.668;VarDP=85 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,55:55:99:.:.:2433,0:.:0,0,26,29 0|1:13,17:30:99:0|1:1125296_TGATA_T:631,0,486:1125296:6,7,8,9 +chrX 1125325 . T C 2763 . AC=2;AF=0.667;AN=3;AS_AltDP=71;AS_QD=32.10;BaseQRankSum=-2.547;DP=91;ExcessHet=0.0000;FS=0.000;MQ=59.26;MQRankSum=-0.86;QD=32.10;ReadPosRankSum=1.19;SOR=0.779;VarDP=87 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,52:52:99:.:.:2158,0:.:0,0,26,26 0|1:16,19:35:99:0|1:1125296_TGATA_T:635,0,552:1125296:8,8,8,11 +chrX 1125529 . G A 2132 . AC=2;AF=0.667;AN=3;AS_AltDP=68;AS_QD=23.76;BaseQRankSum=0.372;DP=93;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=23.76;ReadPosRankSum=-1.474;SOR=0.789;VarDP=91 GT:AD:DP:GQ:PL:SB 1:0,48:48:99:1617,0:0,0,19,29 0/1:23,20:43:99:545,0,625:11,12,12,8 +chrX 1126648 . G C 3087 . AC=2;AF=0.667;AN=3;AS_AltDP=101;AS_QD=23.09;BaseQRankSum=0.384;DP=138;ExcessHet=0.0000;FS=0.733;MQ=60.00;MQRankSum=0;QD=23.09;ReadPosRankSum=-2.23;SOR=0.606;VarDP=135 GT:AD:DP:GQ:PL:SB 1:0,74:74:99:2407,0:0,0,38,36 0/1:34,27:61:99:710,0,934:18,16,13,14 +chrX 1126828 . T A 2962 . AC=2;AF=0.667;AN=3;AS_AltDP=96;AS_QD=23.56;BaseQRankSum=-2.006;DP=130;ExcessHet=0.0000;FS=9.975;MQ=60.00;MQRankSum=0;QD=23.56;ReadPosRankSum=0.008;SOR=0.973;VarDP=127 GT:AD:DP:GQ:PL:SB 1:0,71:71:99:2383,0:0,0,25,46 0/1:31,25:56:99:609,0,868:18,13,14,11 +chrX 1127011 . G C 1696 . AC=1;AF=0.333;AN=3;AS_AltDP=55;AS_QD=31.38;DP=118;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.38;SOR=0.729;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,55:55:99:.:1726,0:0,0,28,27 0/0:.:58:91:58:0,91,1191 +chrX 1127213 . A ATAGG 4380.97 . AC=2;AF=0.667;AN=3;AS_AltDP=102;AS_QD=25.11;BaseQRankSum=-0.772;DP=124;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=37.14;ReadPosRankSum=0;SOR=0.628;VarDP=119 GT:AD:DP:GQ:PL:SB 1:0,70:70:99:3128,0:0,0,32,38 0/1:17,32:49:99:1292,0,618:8,9,18,14 +chrX 1127292 . CACAGGTACAGGT C 3059.97 . AC=2;AF=0.667;AN=3;AS_AltDP=88;AS_QD=26.49;BaseQRankSum=2.433;DP=141;ExcessHet=0.0000;FS=1.785;MQ=60.00;MQRankSum=0;QD=26.49;ReadPosRankSum=1.341;SOR=0.984;VarDP=117 GT:AD:DP:GQ:PL:SB 1:2,57:59:99:1878,0:2,0,21,36 0/1:27,31:58:99:1221,0,1029:11,16,13,18 +chrX 1127618 . T G 162 . AC=2;AF=1.00;AN=2;AS_AltDP=7;AS_QD=27.43;DP=20;ExcessHet=0.0000;FS=0.000;MQ=38.43;QD=27.43;SOR=1.609;VarDP=7 GT:AD:DP:GQ:MIN_DP:PL:SB .:.:12:0:12:0,0 1/1:0,7:7:21:.:192,21,0:0,0,2,5 +chrX 1128110 . T G 407 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=25.71;DP=21;ExcessHet=0.0000;FS=0.000;MQ=32.84;QD=25.71;SOR=1.061;VarDP=17 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,17:17:99:.:437,0:0,0,7,10 0/0:.:2:0:2:0,0,20 +chrX 1128869 . G C 271 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=8.85;BaseQRankSum=-0.801;DP=74;ExcessHet=0.0000;FS=17.627;MQ=48.13;MQRankSum=1.016;QD=8.85;ReadPosRankSum=0.105;SOR=2.233;VarDP=34 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:40:20:40:0,20 0/1:20,14:34:99:.:301,0,494:7,13,11,3 +chrX 1133500 . C G 225 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=4.40;BaseQRankSum=-0.989;DP=127;ExcessHet=0.0000;FS=1.023;MQ=59.92;MQRankSum=1.225;QD=4.40;ReadPosRankSum=-0.908;SOR=0.685;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 1:24,34:58:99:.:255,0:13,11,16,18 0/0:.:65:43:65:0,43,1130 +chrX 1133521 . A G 488 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=10.57;BaseQRankSum=0.27;DP=118;ExcessHet=0.0000;FS=2.410;MQ=60.00;MQRankSum=0;QD=10.57;ReadPosRankSum=0.295;SOR=0.420;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,1349 0/1:29,20:49:99:.:518,0,794:12,17,10,10 +chrX 1134660 . G C 3279 . AC=2;AF=0.667;AN=3;AS_AltDP=110;AS_QD=23.98;BaseQRankSum=1.098;DP=140;ExcessHet=0.0000;FS=2.778;MQ=59.64;MQRankSum=-0.38;QD=23.98;ReadPosRankSum=0.057;SOR=0.506;VarDP=138 GT:AD:DP:GQ:PL:SB 1:0,76:76:99:2384,0:0,0,38,38 0/1:28,34:62:99:925,0,678:16,12,16,18 +chrX 1135632 . C CAA 1001.97 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=23.66;BaseQRankSum=-1.051;DP=102;ExcessHet=0.0000;FS=11.601;MQ=60.00;MQRankSum=0;QD=23.66;ReadPosRankSum=0.301;SOR=0.797;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:55:99:55:0,1101 0/1:17,27:44:99:.:1041,0,622:12,5,11,16 +chrX 1135990 . C A 305 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=7.79;BaseQRankSum=2.118;DP=94;ExcessHet=0.0000;FS=0.000;MQ=59.81;MQRankSum=1.226;QD=7.79;ReadPosRankSum=-0.764;SOR=0.575;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 1:18,25:43:99:.:335,0:8,10,12,13 0/0:.:51:40:51:0,40,943 +chrX 1136005 . G A 285 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=7.68;BaseQRankSum=1.238;DP=92;ExcessHet=0.0000;FS=0.000;MQ=59.80;MQRankSum=1.238;QD=7.68;ReadPosRankSum=-0.291;SOR=0.743;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 1:17,24:41:99:.:315,0:8,9,11,13 0/0:.:51:40:51:0,40,943 +chrX 1136011 . C T 205 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=6.03;BaseQRankSum=1.667;DP=90;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=6.03;ReadPosRankSum=0.468;SOR=0.593;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 1:17,22:39:99:.:235,0:9,8,11,11 0/0:.:51:40:51:0,40,943 +chrX 1136043 . C A 36 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=2.36;BaseQRankSum=0.155;DP=65;ExcessHet=0.0000;FS=0.000;MQ=59.02;MQRankSum=-1.289;QD=2.36;ReadPosRankSum=1.269;SOR=0.709;VarDP=28 GT:AD:DP:GQ:MIN_DP:PL:SB 1:13,15:28:66:.:66,0:6,7,8,7 0/0:.:36:51:36:0,51,948 +chrX 1136052 . CAAA C 129.97 . AC=1;AF=0.333;AN=3;AS_AltDP=6;AS_QD=8.89;BaseQRankSum=-0.792;DP=97;ExcessHet=0.0000;FS=7.521;MQ=58.93;MQRankSum=0;QD=8.89;ReadPosRankSum=0;SOR=2.279;VarDP=19 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,248 0/1:13,6:19:99:.:169,0,397:6,7,5,1 +chrX 1136618 . A G 562 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=13.45;BaseQRankSum=0.106;DP=108;ExcessHet=0.0000;FS=0.000;MQ=58.32;MQRankSum=1.063;QD=13.45;ReadPosRankSum=1.775;SOR=0.836;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:61:57:0,61 0/1:21,23:44:99:.:592,0,532:8,13,8,15 +chrX 1136793 . T G 663 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=6.42;BaseQRankSum=-0.82;DP=128;ExcessHet=0.0000;FS=0.000;MQ=58.06;MQRankSum=2.668;QD=6.42;ReadPosRankSum=-0.751;SOR=0.674;VarDP=108 GT:AD:DP:GQ:PL:SB 1:25,30:55:38:38,0:13,12,20,10 0/1:24,29:53:99:655,0,582:18,6,17,12 +chrX 1136909 . G C 841 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=13.61;BaseQRankSum=-0.234;DP=130;ExcessHet=0.0000;FS=0.000;MQ=59.10;MQRankSum=-2.294;QD=13.61;ReadPosRankSum=-1.552;SOR=0.693;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,183 0/1:32,32:64:99:.:871,0,850:15,17,15,17 +chrX 1136954 . T C 733 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=11.74;BaseQRankSum=-1.887;DP=129;ExcessHet=0.0000;FS=0.000;MQ=59.09;MQRankSum=-2.478;QD=11.74;ReadPosRankSum=1.462;SOR=0.767;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,183 0/1:35,30:65:99:.:763,0,972:17,18,14,16 +chrX 1137173 . C T 195 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=4.02;BaseQRankSum=0.598;DP=121;ExcessHet=0.0000;FS=1.010;MQ=59.25;MQRankSum=-0.338;QD=4.02;ReadPosRankSum=-0.61;SOR=0.544;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 1:25,31:56:99:.:225,0:11,14,15,16 0/0:.:63:99:63:0,120,1800 +chrX 1137177 . T C 2911 . AC=2;AF=0.667;AN=3;AS_AltDP=88;AS_QD=23.72;BaseQRankSum=-0.307;DP=126;ExcessHet=0.0000;FS=7.665;MQ=59.84;MQRankSum=0;QD=23.72;ReadPosRankSum=-1.385;SOR=0.293;VarDP=124 GT:AD:DP:GQ:PL:SB 1:0,58:58:99:2151,0:0,0,27,31 0/1:36,30:66:99:790,0,1013:13,23,17,13 +chrX 1137702 . C G,A 1056 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=29,30;AS_QD=3.17,11.16;BaseQRankSum=0.749;DP=110;ExcessHet=0.0000;FS=6.122;MQ=60.00;MQRankSum=0;QD=10.34;ReadPosRankSum=-0.758;SOR=0.403;VarDP=105 GT:AD:DP:GQ:PL:SB 1:22,29,0:51:99:238,0,963:7,15,13,16 0/2:24,0,30:54:99:848,920,1663,0,742,652:11,13,17,13 +chrX 1137978 . C G 1876 . AC=3;AF=1.00;AN=3;AS_AltDP=90;AS_QD=16.02;BaseQRankSum=-1.311;DP=124;ExcessHet=0.0000;FS=5.362;MQ=60.00;MQRankSum=0;QD=16.02;ReadPosRankSum=-0.383;SOR=0.862;VarDP=119 GT:AD:DP:GQ:PL:SB 1:29,40:69:99:302,0:13,16,26,14 1/1:0,50:50:99:1604,149,0:0,0,25,25 +chrX 1138501 . C T 1145 . AC=2;AF=0.667;AN=3;AS_AltDP=43;AS_QD=25.00;BaseQRankSum=2.099;DP=122;ExcessHet=0.0000;FS=13.041;MQ=59.71;MQRankSum=3.355;QD=25.00;ReadPosRankSum=-1.278;SOR=0.472;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,185 1/1:4,43:47:76:.:1175,76,0:0,4,24,19 +chrX 1138550 . C T 1770 . AC=1;AF=0.333;AN=3;AS_AltDP=47;AS_QD=24.00;BaseQRankSum=2.291;DP=151;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=24.00;ReadPosRankSum=1.068;SOR=0.682;VarDP=75 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:64:99:64:.:.:0,185 0|1:28,47:75:99:.:0|1:1138550_C_T:1800,0,953:1138550:15,13,25,22 +chrX 1138559 . G A 1821 . AC=1;AF=0.333;AN=3;AS_AltDP=48;AS_QD=23.14;BaseQRankSum=2.049;DP=156;ExcessHet=0.0000;FS=0.871;MQ=60.00;MQRankSum=0;QD=23.14;ReadPosRankSum=1.986;SOR=0.516;VarDP=80 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:64:99:64:.:.:0,185 0|1:32,48:80:99:.:0|1:1138550_C_T:1851,0,1118:1138550:19,13,26,22 +chrX 1138563 . A G 1826 . AC=1;AF=0.333;AN=3;AS_AltDP=49;AS_QD=22.10;BaseQRankSum=1.12;DP=160;ExcessHet=0.0000;FS=2.934;MQ=60.00;MQRankSum=0;QD=22.10;ReadPosRankSum=2.784;SOR=0.438;VarDP=84 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:64:99:64:.:.:0,185 0|1:35,49:84:99:.:0|1:1138550_C_T:1856,0,1242:1138550:22,13,27,22 +chrX 1138575 . C T 1929 . AC=1;AF=0.333;AN=3;AS_AltDP=51;AS_QD=22.01;BaseQRankSum=0.798;DP=167;ExcessHet=0.0000;FS=2.821;MQ=59.94;MQRankSum=0;QD=22.01;ReadPosRankSum=1.259;SOR=0.443;VarDP=89 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:64:99:64:.:.:0,185 0|1:38,51:89:99:.:0|1:1138550_C_T:1959,0,1346:1138550:23,15,27,24 +chrX 1138605 . C T 740 . AC=1;AF=0.333;AN=3;AS_AltDP=39;AS_QD=8.46;BaseQRankSum=0.571;DP=169;ExcessHet=0.0000;FS=6.733;MQ=59.95;MQRankSum=0;QD=8.46;ReadPosRankSum=-0.186;SOR=0.595;VarDP=91 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,185 0/1:52,39:91:99:.:770,0,1734:31,21,18,21 +chrX 1138619 . G C 1746 . AC=1;AF=0.333;AN=3;AS_AltDP=48;AS_QD=19.73;BaseQRankSum=-0.752;DP=166;ExcessHet=0.0000;FS=14.503;MQ=59.94;MQRankSum=0;QD=19.73;ReadPosRankSum=0.177;SOR=0.635;VarDP=90 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:64:99:64:.:.:0,185 0|1:42,48:90:99:.:0|1:1138550_C_T:1776,0,1551:1138550:28,14,21,27 +chrX 1138641 . G C 1616 . AC=1;AF=0.333;AN=3;AS_AltDP=48;AS_QD=16.97;BaseQRankSum=-0.291;DP=173;ExcessHet=0.0000;FS=8.044;MQ=59.95;MQRankSum=0;QD=16.97;ReadPosRankSum=-0.779;SOR=0.747;VarDP=97 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:64:99:64:.:.:0,185 0|1:49,48:97:99:.:0|1:1138550_C_T:1646,0,1670:1138550:29,20,21,27 +chrX 1138687 . G A 54 . AC=1;AF=0.333;AN=3;AS_AltDP=9;AS_QD=1.40;BaseQRankSum=0.193;DP=138;ExcessHet=0.0000;FS=11.419;MQ=59.85;MQRankSum=0.467;QD=1.40;ReadPosRankSum=1.232;SOR=2.699;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,185 0/1:51,9:60:84:.:84,0,1384:28,23,8,1 +chrX 1138700 . A G 862 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=16.22;BaseQRankSum=0.21;DP=126;ExcessHet=0.0000;FS=5.726;MQ=59.82;MQRankSum=-0.779;QD=16.22;ReadPosRankSum=0.103;SOR=1.275;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,185 0/1:22,33:55:99:.:892,0,510:10,12,21,12 +chrX 1139306 . C T 889 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=13.92;BaseQRankSum=1.079;DP=131;ExcessHet=0.0000;FS=0.961;MQ=60.00;MQRankSum=0;QD=13.92;ReadPosRankSum=-0.321;SOR=0.960;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,185 0/1:33,33:66:99:.:919,0,889:14,19,12,21 +chrX 1139855 . G T 1154 . AC=1;AF=0.333;AN=3;AS_AltDP=43;AS_QD=16.44;BaseQRankSum=-0.471;DP=137;ExcessHet=0.0000;FS=4.713;MQ=59.65;MQRankSum=1.246;QD=16.44;ReadPosRankSum=0.098;SOR=0.936;VarDP=72 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,185 0/1:29,43:72:99:.:1184,0,713:16,13,18,25 +chrX 1139856 . C T 2861 . AC=2;AF=0.667;AN=3;AS_AltDP=72;AS_QD=27.65;DP=137;ExcessHet=0.0000;FS=0.000;MQ=59.65;QD=40.15;SOR=0.807;VarDP=72 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,185 1/1:0,72:72:99:.:2891,217,0:0,0,34,38 +chrX 1139875 . G A 2296 . AC=2;AF=0.667;AN=3;AS_AltDP=74;AS_QD=31.43;DP=142;ExcessHet=0.0000;FS=0.000;MQ=59.68;QD=31.43;SOR=0.864;VarDP=74 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,185 1/1:0,74:74:99:.:2326,221,0:0,0,34,40 +chrX 1140501 . C G 1464 . AC=2;AF=0.667;AN=3;AS_AltDP=48;AS_QD=31.13;DP=113;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.13;SOR=0.693;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,185 1/1:0,48:48:99:.:1494,144,0:0,0,24,24 +chrX 1140554 . C T 716 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=5.92;BaseQRankSum=0.461;DP=130;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=5.92;ReadPosRankSum=0.32;SOR=0.697;VarDP=126 GT:AD:DP:GQ:PL:SB 1:36,40:76:99:161,0:22,14,22,18 0/1:28,22:50:99:585,0,757:12,16,11,11 +chrX 1140569 . A G 2105 . AC=3;AF=1.00;AN=3;AS_AltDP=93;AS_QD=16.68;BaseQRankSum=-2.018;DP=129;ExcessHet=0.0000;FS=4.881;MQ=60.00;MQRankSum=0;QD=16.68;ReadPosRankSum=0.812;SOR=0.411;VarDP=128 GT:AD:DP:GQ:PL:SB 1:35,38:73:99:111,0:21,14,21,17 1/1:0,55:55:99:2024,165,0:0,0,25,30 +chrX 1140993 . C G 2073 . AC=2;AF=0.667;AN=3;AS_AltDP=68;AS_QD=30.48;BaseQRankSum=2.041;DP=142;ExcessHet=0.0000;FS=3.475;MQ=59.47;MQRankSum=-0.142;QD=30.48;ReadPosRankSum=0.276;SOR=0.606;VarDP=69 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:70:66:70:0,66 1/1:1,68:69:99:.:2103,196,0:0,1,38,30 +chrX 1141145 . A G 1810 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=31.72;DP=130;ExcessHet=0.0000;FS=0.000;MQ=58.89;QD=31.72;SOR=0.693;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:70:66:70:0,66 1/1:0,58:58:99:.:1840,174,0:0,0,29,29 +chrX 1141203 . G A 1807 . AC=3;AF=1.00;AN=3;AS_AltDP=81;AS_QD=16.85;BaseQRankSum=2.07;DP=113;ExcessHet=0.0000;FS=0.835;MQ=59.34;MQRankSum=-2.037;QD=16.85;ReadPosRankSum=-0.221;SOR=0.892;VarDP=109 GT:AD:DP:GQ:PL:SB 1:28,28:56:85:85,0:13,15,13,15 1/1:0,53:53:99:1752,159,0:0,0,21,32 +chrX 1141234 . C T 2259 . AC=3;AF=1.00;AN=3;AS_AltDP=77;AS_QD=22.44;BaseQRankSum=2.182;DP=106;ExcessHet=0.0000;FS=0.000;MQ=59.57;MQRankSum=-1.59;QD=22.44;ReadPosRankSum=-0.33;SOR=0.752;VarDP=102 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:25,30:55:99:.:.:185,0:.:11,14,14,16 1|1:0,47:47:99:0|1:1141234_C_T:2104,141,0:1141234:0,0,19,28 +chrX 1141239 . G C 2139 . AC=3;AF=1.00;AN=3;AS_AltDP=72;AS_QD=22.59;BaseQRankSum=2.503;DP=100;ExcessHet=0.0000;FS=0.878;MQ=59.54;MQRankSum=-1.676;QD=22.59;ReadPosRankSum=0.12;SOR=0.818;VarDP=96 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:24,26:50:99:.:.:100,0:.:11,13,13,13 1|1:0,46:46:99:0|1:1141234_C_T:2069,138,0:1141234:0,0,18,28 +chrX 1141265 . A G 2201 . AC=3;AF=1.00;AN=3;AS_AltDP=77;AS_QD=23.48;BaseQRankSum=0.367;DP=103;ExcessHet=0.0000;FS=0.000;MQ=59.55;MQRankSum=-1.478;QD=23.48;ReadPosRankSum=0.739;SOR=0.719;VarDP=95 GT:AD:DP:GQ:PL:SB 1:18,25:43:99:243,0:9,9,15,10 1/1:0,52:52:99:1988,156,0:0,0,23,29 +chrX 1141270 . AAGT A 839.97 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=16.90;BaseQRankSum=-0.466;DP=120;ExcessHet=0.0000;FS=23.293;MQ=59.67;MQRankSum=-0.111;QD=16.90;ReadPosRankSum=1.685;SOR=1.544;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,1577 0/1:29,23:52:99:.:879,0,1132:21,8,7,16 +chrX 1141515 . C T 673 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=11.34;BaseQRankSum=1.332;DP=131;ExcessHet=0.0000;FS=3.540;MQ=60.00;MQRankSum=0;QD=11.34;ReadPosRankSum=0.248;SOR=0.340;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,1577 0/1:34,28:62:99:.:703,0,826:13,21,14,14 +chrX 1141771 . A G 1373 . AC=3;AF=1.00;AN=3;AS_AltDP=73;AS_QD=13.62;BaseQRankSum=-0.838;DP=105;ExcessHet=0.0000;FS=8.811;MQ=59.53;MQRankSum=-0.434;QD=13.62;ReadPosRankSum=-0.507;SOR=0.239;VarDP=103 GT:AD:DP:GQ:PL:SB 1:30,35:65:99:132,0:9,21,16,19 1/1:0,38:38:99:1271,114,0:0,0,18,20 +chrX 1141892 . AAC A,AACACAC,AAAACACAC 776.97 . AC=0,0,1;AF=0.00,0.00,0.333;AN=3;AS_AltDP=0,0,18;AS_QD=0.00,5.67,24.73;BaseQRankSum=-0.128;DP=95;ExcessHet=0.0000;FS=11.400;MQ=56.59;MQRankSum=-0.069;QD=24.73;ReadPosRankSum=1.158;SOR=0.463;VarDP=33 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:39:99:39:0,412,412,412 0/3:15,0,0,18:33:99:.:816,917,2065,731,1862,1836,0,661,675,597:3,12,10,8 +chrX 1141894 . C *,A 311 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=0,15;AS_QD=0.00,9.47;BaseQRankSum=-0.047;DP=95;ExcessHet=0.0000;FS=10.793;MQ=56.59;MQRankSum=0.937;QD=9.47;ReadPosRankSum=-0.947;SOR=2.434;VarDP=36 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:39:99:39:0,412,412 0/2:21,0,15:36:99:.:341,499,2066,0,927,866:11,10,3,12 +chrX 1142225 . AAC A 206.97 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=20.50;BaseQRankSum=-0.53;DP=43;ExcessHet=0.0000;FS=4.771;MQ=46.12;MQRankSum=-0.517;QD=20.50;ReadPosRankSum=0.145;SOR=1.670;VarDP=12 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,11:12:99:.:246,0:1,0,3,8 0/0:.:19:21:17:0,21,315 +chrX 1142274 . AC A 113.97 . AC=1;AF=0.333;AN=3;AS_AltDP=4;AS_QD=30.60;BaseQRankSum=0;DP=30;ExcessHet=0.0000;FS=0.000;MQ=43.44;MQRankSum=1.282;QD=30.60;ReadPosRankSum=1.282;SOR=0.693;VarDP=5 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:23:99:23:.:.:0,496 0|1:1,4:5:11:.:0|1:1142274_AC_A:153,0,11:1142274:0,1,1,3 +chrX 1142280 . C G 123 . AC=1;AF=0.333;AN=3;AS_AltDP=4;AS_QD=30.60;DP=30;ExcessHet=0.0000;FS=0.000;MQ=43.10;MQRankSum=1.282;QD=30.60;SOR=0.693;VarDP=5 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:23:99:23:.:.:0,496 0|1:1,4:5:11:.:0|1:1142274_AC_A:153,0,11:1142274:0,1,1,3 +chrX 1142511 . A G 65 . AC=2;AF=0.667;AN=3;AS_AltDP=3;AS_QD=31.67;DP=26;ExcessHet=0.0000;FS=0.000;MQ=45.30;QD=31.67;SOR=2.833;VarDP=3 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:23:99:23:0,496 1/1:0,3:3:9:.:95,9,0:0,0,3,0 +chrX 1142574 . AACACACAC A,AACAC,AACACACACACACACAC 1200.97 . AC=1,1,1;AF=0.333,0.333,0.333;AN=3;AS_AltDP=22,10,9;AS_QD=31.54,29.33,27.76;BaseQRankSum=-0.167;DP=53;ExcessHet=0.0000;FS=0.000;MQ=54.89;MQRankSum=2.142;QD=28.84;ReadPosRankSum=1.736;SOR=1.666;VarDP=43 GT:AD:DP:GQ:PL:SB 2:2,9,10,0:21:99:352,121,0,468:1,1,6,13 1/3:0,13,0,9:22:99:888,362,402,897,405,933,529,0,535,503:0,0,7,15 +chrX 1142834 . T C 1930 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=30.88;DP=91;ExcessHet=0.0000;FS=0.000;MQ=50.16;QD=41.70;SOR=0.735;VarDP=47 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:44:99:44:.:.:0,168 1|1:0,47:47:99:.:0|1:1142834_T_C:1960,141,0:1142834:0,0,24,23 +chrX 1142846 . G A 1766 . AC=2;AF=1.00;AN=2;AS_AltDP=42;AS_QD=27.49;DP=81;ExcessHet=0.0000;FS=0.000;MQ=48.21;QD=42.76;SOR=0.788;VarDP=42 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB .:.:39:0:39:.:.:0,0 1|1:0,42:42:99:.:0|1:1142834_T_C:1796,126,0:1142834:0,0,22,20 +chrX 1142916 . A AACACAC 166.97 . AC=1;AF=0.333;AN=3;AS_AltDP=5;AS_QD=34.33;BaseQRankSum=0;DP=42;ExcessHet=0.0000;FS=7.782;MQ=35.65;MQRankSum=0.967;QD=34.33;ReadPosRankSum=0.674;SOR=3.590;VarDP=6 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:21:99:21:0,135 0/1:1,5:6:28:.:206,0,28:1,0,0,5 +chrX 1143812 . AACACACACAC A 125.97 . AC=1;AF=0.333;AN=3;AS_AltDP=5;AS_QD=11.79;BaseQRankSum=-0.303;DP=48;ExcessHet=0.0000;FS=0.000;MQ=38.61;MQRankSum=0.26;QD=11.79;ReadPosRankSum=-0.398;SOR=0.905;VarDP=14 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:23:45:23:0,45 0/1:9,5:14:99:.:165,0,242:4,5,3,2 +chrX 1144231 . A C 1703 . AC=2;AF=0.667;AN=3;AS_AltDP=67;AS_QD=14.44;BaseQRankSum=1.065;DP=125;ExcessHet=0.0000;FS=6.992;MQ=59.10;MQRankSum=1.724;QD=14.44;ReadPosRankSum=1.809;SOR=1.209;VarDP=120 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:26,37:63:99:.:.:610,0:.:14,12,15,22 0|1:27,30:57:99:0|1:1144231_A_C:1123,0,963:1144231:13,14,11,19 +chrX 1144249 . A C 1952 . AC=2;AF=0.667;AN=3;AS_AltDP=72;AS_QD=16.38;BaseQRankSum=1.251;DP=123;ExcessHet=0.0000;FS=0.000;MQ=59.45;MQRankSum=1.399;QD=16.38;ReadPosRankSum=0.761;SOR=0.660;VarDP=121 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:23,43:66:99:.:.:887,0:.:11,12,21,22 0|1:26,29:55:99:0|1:1144231_A_C:1095,0,921:1144231:11,15,12,17 +chrX 1144396 . G A 1050 . AC=1;AF=0.333;AN=3;AS_AltDP=39;AS_QD=16.62;BaseQRankSum=-0.928;DP=129;ExcessHet=0.0000;FS=0.970;MQ=60.00;MQRankSum=0;QD=16.62;ReadPosRankSum=0.757;SOR=0.483;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,173 0/1:26,39:65:99:.:1080,0,678:11,15,19,20 +chrX 1144477 . G A 1168 . AC=1;AF=0.333;AN=3;AS_AltDP=44;AS_QD=15.56;BaseQRankSum=-0.15;DP=141;ExcessHet=0.0000;FS=0.880;MQ=60.00;MQRankSum=0;QD=15.56;ReadPosRankSum=0.103;SOR=0.889;VarDP=77 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,173 0/1:33,44:77:99:.:1198,0,846:18,15,26,18 +chrX 1144683 . C T 797 . AC=2;AF=0.667;AN=3;AS_AltDP=69;AS_QD=6.13;BaseQRankSum=-0.331;DP=138;ExcessHet=0.0000;FS=2.238;MQ=59.97;MQRankSum=0;QD=6.13;ReadPosRankSum=0.794;SOR=0.489;VarDP=135 GT:AD:DP:GQ:PL:SB 1:38,39:77:14:14,0:24,14,25,14 0/1:28,30:58:99:813,0,769:18,10,15,15 +chrX 1145083 . C CA,CAA 1980.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=68,23;AS_QD=27.85,32.30;DP=138;ExcessHet=0.0000;FS=0.000;MQ=59.60;QD=22.20;SOR=0.760;VarDP=91 GT:AD:DP:GQ:PL:SB 2:0,16,23:39:99:858,126,0:0,0,20,19 1/1:0,52,0:52:99:1162,154,0,1162,154,1162:0,0,24,28 +chrX 1145234 . G A 527 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=12.66;BaseQRankSum=0.235;DP=116;ExcessHet=0.0000;FS=2.635;MQ=60.00;MQRankSum=0;QD=12.66;ReadPosRankSum=1.352;SOR=0.491;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:70:99:70:0,1606 0/1:23,21:44:99:.:557,0,617:14,9,10,11 +chrX 1145288 . T TCTC 1041.97 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=11.50;BaseQRankSum=-0.445;DP=100;ExcessHet=0.0000;FS=0.787;MQ=60.00;MQRankSum=0;QD=11.50;ReadPosRankSum=0.962;SOR=0.559;VarDP=94 GT:AD:DP:GQ:PL:SB 1:26,30:56:99:205,0:18,8,17,13 0/1:16,22:38:99:876,0,565:7,9,12,10 +chrX 1145457 . G A 1135 . AC=2;AF=0.667;AN=3;AS_AltDP=72;AS_QD=8.96;BaseQRankSum=1.37;DP=137;ExcessHet=0.0000;FS=4.207;MQ=60.00;MQRankSum=0;QD=8.96;ReadPosRankSum=0.986;SOR=1.059;VarDP=130 GT:AD:DP:GQ:PL:SB 1:32,40:72:99:308,0:12,20,23,17 0/1:26,32:58:99:857,0,639:18,8,20,12 +chrX 1145558 . C T 4233 . AC=2;AF=0.667;AN=3;AS_AltDP=100;AS_QD=32.05;BaseQRankSum=2.489;DP=134;ExcessHet=0.0000;FS=7.873;MQ=59.67;MQRankSum=0;QD=32.05;ReadPosRankSum=1.156;SOR=0.833;VarDP=133 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,69:69:99:.:.:3083,0:.:0,0,28,41 0|1:33,31:64:99:0|1:1145558_C_T:1180,0,1260:1145558:19,14,15,16 +chrX 1145559 . G A 4233 . AC=2;AF=0.667;AN=3;AS_AltDP=100;AS_QD=32.05;BaseQRankSum=1.116;DP=134;ExcessHet=0.0000;FS=7.873;MQ=59.67;MQRankSum=0;QD=32.05;ReadPosRankSum=1.15;SOR=0.833;VarDP=133 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,69:69:99:.:.:3083,0:.:0,0,28,41 0|1:33,31:64:99:0|1:1145558_C_T:1180,0,1260:1145558:19,14,15,16 +chrX 1145727 . C T 966 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=8.44;BaseQRankSum=2.708;DP=122;ExcessHet=0.0000;FS=0.689;MQ=59.91;MQRankSum=0;QD=8.44;ReadPosRankSum=0.678;SOR=0.813;VarDP=118 GT:AD:DP:GQ:PL:SB 1:27,40:67:99:417,0:13,14,19,21 0/1:29,22:51:99:579,0,665:13,16,8,14 +chrX 1146061 . C A 922 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=13.80;BaseQRankSum=1.25;DP=140;ExcessHet=0.0000;FS=3.248;MQ=60.00;MQRankSum=0;QD=13.80;ReadPosRankSum=-0.24;SOR=0.705;VarDP=69 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:71:99:71:0,232 0/1:34,35:69:99:.:952,0,894:19,15,16,19 +chrX 1146492 . A C 169 . AC=1;AF=0.333;AN=3;AS_AltDP=10;AS_QD=11.71;BaseQRankSum=0.882;DP=20;ExcessHet=0.0000;FS=0.000;MQ=29.29;MQRankSum=-2.01;QD=11.71;ReadPosRankSum=0.098;SOR=0.495;VarDP=17 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:2:35:1:0,35 0/1:7,10:17:10:.:199,0,10:3,4,5,5 +chrX 1147338 . C A 405 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=12.43;BaseQRankSum=1.482;DP=36;ExcessHet=0.0000;FS=1.421;MQ=57.43;MQRankSum=0.174;QD=12.43;ReadPosRankSum=-2.795;SOR=1.099;VarDP=35 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:15:35:1:.:.:0,35 0|1:23,12:35:99:.:0|1:1147338_C_A:435,0,930:1147338:13,10,8,4 +chrX 1147339 . C T 402 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=12.00;BaseQRankSum=1.921;DP=37;ExcessHet=0.0000;FS=1.383;MQ=57.51;MQRankSum=0.121;QD=12.00;ReadPosRankSum=-2.347;SOR=1.009;VarDP=36 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:15:35:1:.:.:0,35 0|1:24,12:36:99:.:0|1:1147338_C_A:432,0,972:1147338:14,10,8,4 +chrX 1147351 . C T 615 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=16.13;BaseQRankSum=3.105;DP=41;ExcessHet=0.0000;FS=4.786;MQ=57.76;MQRankSum=0.661;QD=16.13;ReadPosRankSum=-1.688;SOR=1.609;VarDP=40 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:15:35:1:.:.:0,35 0|1:23,17:40:99:.:0|1:1147338_C_A:645,0,915:1147338:12,11,12,5 +chrX 1147353 . G C 615 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=16.13;BaseQRankSum=-0.723;DP=41;ExcessHet=0.0000;FS=4.786;MQ=57.76;MQRankSum=0.661;QD=16.13;ReadPosRankSum=-2.281;SOR=1.609;VarDP=40 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:15:35:1:.:.:0,35 0|1:23,17:40:99:.:0|1:1147338_C_A:645,0,915:1147338:12,11,12,5 +chrX 1147373 . C A 847 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=17.54;BaseQRankSum=2.967;DP=92;ExcessHet=0.0000;FS=0.000;MQ=57.61;MQRankSum=0.129;QD=17.54;ReadPosRankSum=-0.814;SOR=0.752;VarDP=50 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:41:5:41:.:.:0,5 0|1:27,23:50:99:.:0|1:1147338_C_A:877,0,943:1147338:16,11,14,9 +chrX 1147405 . C T 1118 . AC=1;AF=0.500;AN=2;AS_AltDP=29;AS_QD=22.08;BaseQRankSum=1.345;DP=97;ExcessHet=0.0000;FS=2.399;MQ=59.03;MQRankSum=-0.41;QD=22.08;ReadPosRankSum=0.852;SOR=1.143;VarDP=52 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB .:.:44:0:44:.:.:0,0 0|1:23,29:52:99:.:0|1:1147338_C_A:1148,0,878:1147338:12,11,18,11 +chrX 1147411 . C G 1150 . AC=1;AF=0.500;AN=2;AS_AltDP=30;AS_QD=22.26;BaseQRankSum=1.182;DP=103;ExcessHet=0.0000;FS=0.000;MQ=59.05;MQRankSum=-0.381;QD=22.26;ReadPosRankSum=0.885;SOR=0.841;VarDP=53 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB .:.:49:0:49:.:.:0,0 0|1:23,30:53:99:.:0|1:1147338_C_A:1180,0,875:1147338:13,10,18,12 +chrX 1147439 . T C 1295 . AC=1;AF=0.500;AN=2;AS_AltDP=35;AS_QD=21.37;BaseQRankSum=0.778;DP=127;ExcessHet=0.0000;FS=0.979;MQ=59.33;MQRankSum=-1.229;QD=21.37;ReadPosRankSum=1.284;SOR=0.917;VarDP=62 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB .:.:62:0:62:.:.:0,0 0|1:27,35:62:99:.:0|1:1147338_C_A:1325,0,946:1147338:14,13,20,15 +chrX 1147523 . G C 4198 . AC=3;AF=1.00;AN=3;AS_AltDP=126;AS_QD=33.56;DP=129;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.56;SOR=1.016;VarDP=126 GT:AD:DP:GQ:PL:SB 1:0,70:70:99:2361,0:0,0,33,37 1/1:0,56:56:99:1867,168,0:0,0,21,35 +chrX 1147667 . C T 1063 . AC=1;AF=0.333;AN=3;AS_AltDP=42;AS_QD=14.77;BaseQRankSum=-0.268;DP=160;ExcessHet=0.0000;FS=0.888;MQ=60.00;MQRankSum=0;QD=14.77;ReadPosRankSum=-0.207;SOR=0.862;VarDP=74 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:85:99:85:0,155 0/1:32,42:74:99:.:1093,0,806:17,15,24,18 +chrX 1147735 . G A 3498 . AC=2;AF=0.667;AN=3;AS_AltDP=112;AS_QD=24.33;BaseQRankSum=1.329;DP=152;ExcessHet=0.0000;FS=4.825;MQ=60.00;MQRankSum=0;QD=24.33;ReadPosRankSum=-0.026;SOR=0.804;VarDP=145 GT:AD:DP:GQ:PL:SB 1:0,80:80:99:2655,0:0,0,34,46 0/1:33,32:65:99:873,0,852:18,15,16,16 +chrX 1147883 . C G 6288 . AC=3;AF=1.00;AN=3;AS_AltDP=143;AS_QD=25.57;DP=145;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.18;SOR=0.707;VarDP=143 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,71:71:99:.:.:3121,0:.:0,0,33,38 1|1:0,72:72:99:0|1:1147883_C_G:3197,217,0:1147883:0,0,38,34 +chrX 1147884 . A C 6288 . AC=3;AF=1.00;AN=3;AS_AltDP=143;AS_QD=32.59;DP=147;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.18;SOR=0.707;VarDP=143 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,71:71:99:.:.:3121,0:.:0,0,33,38 1|1:0,72:72:99:0|1:1147883_C_G:3197,217,0:1147883:0,0,38,34 +chrX 1147908 . G A 945 . AC=2;AF=0.667;AN=3;AS_AltDP=70;AS_QD=6.96;BaseQRankSum=1.886;DP=148;ExcessHet=0.0000;FS=4.000;MQ=60.00;MQRankSum=0;QD=6.96;ReadPosRankSum=2.062;SOR=0.748;VarDP=140 GT:AD:DP:GQ:PL:SB 1:34,34:68:31:31,0:16,18,14,20 0/1:36,36:72:99:944,0,950:22,14,18,18 +chrX 1147942 . G A 828 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=13.00;BaseQRankSum=1.599;DP=138;ExcessHet=0.0000;FS=2.138;MQ=60.00;MQRankSum=0;QD=13.00;ReadPosRankSum=0.617;SOR=1.051;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:99:68:0,385 0/1:35,31:66:99:.:858,0,948:21,14,21,10 +chrX 1147978 . C T 1772 . AC=2;AF=0.667;AN=3;AS_AltDP=74;AS_QD=13.15;BaseQRankSum=1.489;DP=143;ExcessHet=0.0000;FS=2.205;MQ=60.00;MQRankSum=0;QD=13.15;ReadPosRankSum=0.62;SOR=0.918;VarDP=137 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:29,38:67:99:.:.:404,0:.:14,15,23,15 0|1:34,36:70:99:0|1:1147978_C_T:1398,0,1308:1147978:22,12,23,13 +chrX 1147979 . C G 1772 . AC=2;AF=0.667;AN=3;AS_AltDP=74;AS_QD=13.15;BaseQRankSum=0.768;DP=142;ExcessHet=0.0000;FS=2.205;MQ=60.00;MQRankSum=0;QD=13.15;ReadPosRankSum=0.76;SOR=0.918;VarDP=137 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:29,38:67:99:.:.:404,0:.:14,15,23,15 0|1:34,36:70:99:0|1:1147978_C_T:1398,0,1308:1147978:22,12,23,13 +chrX 1148339 . A T 1937 . AC=1;AF=0.333;AN=3;AS_AltDP=59;AS_QD=33.34;DP=92;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.34;SOR=0.871;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,59:59:99:.:1967,0:0,0,27,32 0/0:.:34:32:29:0,32,667 +chrX 1148479 . T TATATATATATATATATATA 358.97 . AC=2;AF=0.667;AN=3;AS_AltDP=10;AS_QD=32.19;DP=77;ExcessHet=0.0000;FS=0.000;MQ=56.57;QD=39.80;SOR=1.085;VarDP=10 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:64:99:64:.:.:0,203 1|1:0,10:10:30:.:0|1:1148479_T_TATATATATATATATATATA:398,30,0:1148479:0,0,4,6 +chrX 1148481 . T A 368 . AC=2;AF=0.667;AN=3;AS_AltDP=10;AS_QD=28.99;DP=77;ExcessHet=0.0000;FS=0.000;MQ=56.57;QD=39.80;SOR=1.085;VarDP=10 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:64:99:64:.:.:0,203 1|1:0,10:10:30:.:0|1:1148479_T_TATATATATATATATATATA:398,30,0:1148479:0,0,4,6 +chrX 1148483 . T A,TA 729 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=14,17;AS_QD=31.40,30.41;BaseQRankSum=-0.649;DP=39;ExcessHet=0.0000;FS=0.000;MQ=58.79;MQRankSum=-0.214;QD=23.72;ReadPosRankSum=-1.301;SOR=0.465;VarDP=32 GT:AD:DP:GQ:MIN_DP:PL:SB 2:1,14,17:32:99:.:759,213,0:0,1,12,19 0/0:.:3:0:3:0,0,25,0,25,25 +chrX 1148495 . A AATTTTT 230.97 . AC=2;AF=0.667;AN=3;AS_AltDP=6;AS_QD=27.70;DP=35;ExcessHet=0.0000;FS=0.000;MQ=54.32;QD=45.00;SOR=1.329;VarDP=6 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:27:99:27:.:.:0,540 1|1:0,6:6:18:.:0|1:1148479_T_TATATATATATATATATATA:270,18,0:1148479:0,0,2,4 +chrX 1148497 . A ATATTTTTTTTTT,ATATTTTTTTTTTTT,ATATATATTTTTTTTTT,ATATATATTTTTTTTTTTT,T 1105 . AC=0,0,0,1,2;AF=0.00,0.00,0.00,0.333,0.667;AN=3;AS_AltDP=4,2,1,4,6;AS_QD=31.92,28.49,31.74,32.99,26.41;BaseQRankSum=-0.649;DP=44;ExcessHet=0.0000;FS=0.000;MQ=57.61;MQRankSum=-0.223;QD=63.06;ReadPosRankSum=0.29;SOR=0.551;VarDP=18 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 4:1,4,2,1,4,0:12:36:.:.:865,138,278,36,0,618:.:0,1,4,7 5|5:0,0,0,0,0,6:6:18:0|1:1148479_T_TATATATATATATATATATA:270,270,270,270,270,270,270,270,270,270,270,270,270,270,270,18,18,18,18,18,0:1148479:0,0,2,4 +chrX 1148635 . G C 672 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=13.50;BaseQRankSum=-0.033;DP=103;ExcessHet=0.0000;FS=0.000;MQ=59.55;MQRankSum=0;QD=13.50;ReadPosRankSum=-0.806;SOR=0.546;VarDP=52 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:46:99:46:.:.:0,400 0|1:26,26:52:99:.:0|1:1148635_G_C:702,0,1004:1148635:18,8,17,9 +chrX 1148642 . A C 692 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=13.88;BaseQRankSum=0.244;DP=102;ExcessHet=0.0000;FS=0.000;MQ=59.54;MQRankSum=0.11;QD=13.88;ReadPosRankSum=0.076;SOR=0.804;VarDP=52 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:46:99:46:.:.:0,400 0|1:25,27:52:99:.:1|0:1148635_G_C:722,0,948:1148635:17,8,19,8 +chrX 1148742 . G C 4743 . AC=3;AF=1.00;AN=3;AS_AltDP=111;AS_QD=27.59;BaseQRankSum=1.572;DP=122;ExcessHet=0.0000;FS=0.000;MQ=58.86;MQRankSum=-0.15;QD=42.62;ReadPosRankSum=1.509;SOR=0.479;VarDP=112 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,61:62:99:.:.:2555,0:.:1,0,39,22 1|1:0,50:50:99:0|1:1148742_G_C:2218,150,0:1148742:0,0,29,21 +chrX 1148746 . C G 5000 . AC=3;AF=1.00;AN=3;AS_AltDP=115;AS_QD=30.55;DP=121;ExcessHet=0.0000;FS=0.000;MQ=58.85;QD=43.74;SOR=1.270;VarDP=115 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,65:65:99:.:.:2812,0:.:0,0,42,23 1|1:0,50:50:99:0|1:1148742_G_C:2218,150,0:1148742:0,0,29,21 +chrX 1148858 . G A 2153 . AC=2;AF=0.667;AN=3;AS_AltDP=73;AS_QD=22.28;BaseQRankSum=-0.556;DP=107;ExcessHet=0.0000;FS=1.981;MQ=59.47;MQRankSum=0;QD=22.28;ReadPosRankSum=-0.114;SOR=0.446;VarDP=98 GT:AD:DP:GQ:PL:SB 1:0,50:50:99:1583,0:0,0,19,31 0/1:25,23:48:99:600,0,695:8,17,10,13 +chrX 1148907 . G A 461 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=8.93;BaseQRankSum=2.235;DP=115;ExcessHet=0.0000;FS=1.036;MQ=59.50;MQRankSum=-1.365;QD=8.93;ReadPosRankSum=0.919;SOR=0.553;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 1:21,34:55:99:.:491,0:9,12,16,18 0/0:.:57:85:57:0,85,1241 +chrX 1149700 . A G 497 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=11.46;BaseQRankSum=-1.225;DP=118;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=11.46;ReadPosRankSum=-0.444;SOR=0.560;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:72:99:72:0,1093 0/1:26,20:46:99:.:527,0,741:12,14,10,10 +chrX 1149723 . G A 488 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=11.77;BaseQRankSum=1.946;DP=119;ExcessHet=0.0000;FS=1.192;MQ=59.49;MQRankSum=0;QD=11.77;ReadPosRankSum=-0.249;SOR=0.990;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:72:99:72:0,1093 0/1:25,19:44:99:.:518,0,650:14,11,12,7 +chrX 1150001 . C CA 236.97 . AC=2;AF=0.667;AN=3;AS_AltDP=29;AS_QD=4.93;BaseQRankSum=0.582;DP=93;ExcessHet=0.0000;FS=2.294;MQ=58.89;MQRankSum=-1.502;QD=4.93;ReadPosRankSum=-0.463;SOR=1.158;VarDP=56 GT:AD:DP:GQ:PL:SB 1:13,17:30:71:71,0:10,3,4,13 0/1:14,12:26:99:205,0,269:3,11,7,5 +chrX 1150018 . A AAAAAGAAAAG 522.97 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=16.53;BaseQRankSum=-1.133;DP=88;ExcessHet=0.0000;FS=23.252;MQ=59.22;MQRankSum=-1.973;QD=16.53;ReadPosRankSum=-0.893;SOR=1.768;VarDP=34 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:49:99:49:.:.:0,500 0|1:19,15:34:99:.:0|1:1150018_A_AAAAAGAAAAG:562,0,753:1150018:4,15,11,4 +chrX 1150034 . A G 573 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=15.08;BaseQRankSum=-0.106;DP=90;ExcessHet=0.0000;FS=16.245;MQ=59.26;MQRankSum=-2.037;QD=15.08;ReadPosRankSum=0.326;SOR=1.128;VarDP=40 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:49:99:49:.:.:0,500 0|1:23,17:40:99:.:0|1:1150018_A_AAAAAGAAAAG:603,0,854:1150018:6,17,11,6 +chrX 1150086 . ATAGC A 638.97 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=15.41;BaseQRankSum=-0.038;DP=95;ExcessHet=0.0000;FS=2.672;MQ=59.14;MQRankSum=-2.103;QD=15.41;ReadPosRankSum=1.638;SOR=0.721;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:49:99:49:0,500 0/1:26,18:44:99:.:678,0,1006:11,15,10,8 +chrX 1150096 . AGATGATGGAGAT A 693.97 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=17.88;BaseQRankSum=0.195;DP=101;ExcessHet=0.0000;FS=2.795;MQ=59.24;MQRankSum=-1.934;QD=17.88;ReadPosRankSum=0.6;SOR=0.695;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:49:99:49:0,500 0/1:22,19:41:99:.:733,0,855:9,13,10,8 +chrX 1150108 . T *,TGATAGATAGATAGATAGATA 1577.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=18,16;AS_QD=0.00,28.92;DP=99;ExcessHet=0.0000;FS=0.000;MQ=59.21;QD=47.56;SOR=0.811;VarDP=34 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:49:99:49:0,500,500 1/2:0,18,16:34:99:.:1617,667,778,763,0,781:0,0,18,16 +chrX 1150131 . T C,TAGATAGATAGATAGAC 895 . AC=1,0;AF=0.333,0.00;AN=3;AS_AltDP=18,0;AS_QD=20.56,6.22;BaseQRankSum=0.144;DP=111;ExcessHet=0.0000;FS=0.000;MQ=59.30;MQRankSum=-2.143;QD=20.56;ReadPosRankSum=2.179;SOR=0.686;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:49:99:49:0,500,500 0/1:27,18,0:45:99:.:925,0,1033,757,995,1785:15,12,10,8 +chrX 1150174 . G A 1164 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=22.53;BaseQRankSum=1.003;DP=105;ExcessHet=0.0000;FS=7.625;MQ=59.77;MQRankSum=-0.804;QD=22.53;ReadPosRankSum=-1.102;SOR=0.321;VarDP=53 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:49:99:49:.:.:0,500 0|1:22,31:53:99:.:0|1:1150174_G_A:1194,0,804:1150174:15,7,15,16 +chrX 1150175 . G T 1164 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=22.53;BaseQRankSum=-1.18;DP=106;ExcessHet=0.0000;FS=7.625;MQ=59.77;MQRankSum=-0.804;QD=22.53;ReadPosRankSum=-1.038;SOR=0.321;VarDP=53 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:49:99:49:.:.:0,500 0|1:22,31:53:99:.:0|1:1150174_G_A:1194,0,804:1150174:15,7,15,16 +chrX 1150190 . G GATAGATAC 1165.97 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=12.42;BaseQRankSum=-0.355;DP=116;ExcessHet=0.0000;FS=9.790;MQ=59.35;MQRankSum=-0.797;QD=12.42;ReadPosRankSum=-0.253;SOR=0.307;VarDP=97 GT:AD:DP:GQ:PL:SB 1:23,23:46:9:9,0:14,9,13,10 0/1:21,30:51:99:1196,0,771:15,6,13,17 +chrX 1150372 . A G 2753 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=26.99;DP=125;ExcessHet=0.0000;FS=0.000;MQ=58.51;QD=44.17;SOR=0.859;VarDP=63 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:61:99:61:.:.:0,1697 1|1:0,63:63:99:.:0|1:1150372_A_G:2783,190,0:1150372:0,0,29,34 +chrX 1150377 . C T 2774 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=32.53;DP=124;ExcessHet=0.0000;FS=0.000;MQ=58.48;QD=44.51;SOR=0.859;VarDP=63 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:61:99:61:.:.:0,1697 1|1:0,63:63:99:.:0|1:1150372_A_G:2804,190,0:1150372:0,0,29,34 +chrX 1150378 . A C 835 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=14.66;BaseQRankSum=1.286;DP=124;ExcessHet=0.0000;FS=0.988;MQ=58.48;MQRankSum=1.44;QD=14.66;ReadPosRankSum=1.717;SOR=0.892;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,1697 0/1:28,31:59:99:.:865,0,745:14,14,14,17 +chrX 1150386 . A C 2705 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=31.68;DP=122;ExcessHet=0.0000;FS=0.000;MQ=58.43;QD=44.84;SOR=0.725;VarDP=61 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:61:99:61:.:.:0,1697 1|1:0,61:61:99:.:0|1:1150372_A_G:2735,184,0:1150372:0,0,30,31 +chrX 1150406 . G C 719 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=12.91;BaseQRankSum=-1.029;DP=123;ExcessHet=0.0000;FS=0.000;MQ=57.97;MQRankSum=-1.241;QD=12.91;ReadPosRankSum=-0.747;SOR=0.701;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,1697 0/1:29,29:58:99:.:749,0,794:14,15,15,14 +chrX 1150420 . G A 101 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=2.02;BaseQRankSum=1.229;DP=126;ExcessHet=0.0000;FS=2.056;MQ=59.93;MQRankSum=1.078;QD=2.02;ReadPosRankSum=-0.197;SOR=0.895;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 1:31,34:65:99:.:131,0:15,16,19,15 0/0:.:56:99:56:0,120,1800 +chrX 1150463 . A G 1671 . AC=3;AF=1.00;AN=3;AS_AltDP=84;AS_QD=14.66;BaseQRankSum=1.95;DP=128;ExcessHet=0.0000;FS=3.926;MQ=58.83;MQRankSum=0;QD=14.66;ReadPosRankSum=0.165;SOR=0.380;VarDP=116 GT:AD:DP:GQ:PL:SB 1:31,32:63:34:34,0:12,19,17,15 1/1:1,52:53:99:1667,134,0:0,1,23,29 +chrX 1150494 . C T 978 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=17.08;BaseQRankSum=-1.662;DP=122;ExcessHet=0.0000;FS=1.020;MQ=58.03;MQRankSum=-2.803;QD=17.08;ReadPosRankSum=-0.86;SOR=0.982;VarDP=59 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:61:99:61:.:.:0,516 0|1:32,27:59:99:.:0|1:1150494_C_T:1008,0,1251:1150494:18,14,17,10 +chrX 1150502 . T A 953 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=16.66;BaseQRankSum=-0.361;DP=121;ExcessHet=0.0000;FS=2.159;MQ=58.03;MQRankSum=-2.697;QD=16.66;ReadPosRankSum=-1.11;SOR=0.991;VarDP=59 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:61:99:61:.:.:0,516 0|1:33,26:59:99:.:0|1:1150494_C_T:983,0,1297:1150494:18,15,16,10 +chrX 1150514 . ATCCCAGCTACTCGGGCATGGTGGTGCACACCTACAG A 886.97 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=15.43;BaseQRankSum=-1.798;DP=124;ExcessHet=0.0000;FS=2.151;MQ=58.83;MQRankSum=-3.01;QD=15.43;ReadPosRankSum=-1.321;SOR=0.900;VarDP=60 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:61:99:61:.:.:0,516 0|1:35,25:60:99:.:0|1:1150494_C_T:926,0,1383:1150494:17,18,14,11 +chrX 1150538 . T *,A 1888 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=23,31;AS_QD=0.00,34.45;DP=117;ExcessHet=0.0000;FS=0.000;MQ=59.03;QD=35.52;SOR=0.846;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,516,516 1/2:0,23,31:54:99:.:1918,1056,1274,943,0,850:0,0,29,25 +chrX 1150846 . AAAG A 562.97 . AC=2;AF=0.667;AN=3;AS_AltDP=31;AS_QD=9.87;BaseQRankSum=0.05;DP=82;ExcessHet=0.0000;FS=7.354;MQ=59.68;MQRankSum=0;QD=9.87;ReadPosRankSum=2.143;SOR=0.199;VarDP=61 GT:AD:DP:GQ:PL:SB 1:16,16:32:50:50,0:11,5,9,7 0/1:14,15:29:99:552,0,543:11,3,8,7 +chrX 1150849 . G *,GA 1179.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=15,14;AS_QD=0.00,35.54;DP=81;ExcessHet=0.0000;FS=1.157;MQ=60.00;QD=42.03;SOR=0.500;VarDP=29 GT:AD:DP:GQ:PL:SB 1:16,16,0:32:50:50,0,790:11,5,9,7 1/2:0,15,14:29:99:1219,504,543,611,0,552:0,0,19,10 +chrX 1150910 . GAGAA G 1559.97 . AC=2;AF=0.667;AN=3;AS_AltDP=37;AS_QD=35.04;DP=88;ExcessHet=0.0000;FS=0.000;MQ=59.66;QD=43.22;SOR=0.984;VarDP=37 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:45:64:45:0,64 1/1:0,37:37:99:.:1599,111,0:0,0,21,16 +chrX 1150986 . GAGAAAGAA G 558.97 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=16.16;BaseQRankSum=-0.39;DP=108;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=16.16;ReadPosRankSum=0.987;SOR=0.532;VarDP=37 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:64:59:0,64 0/1:21,16:37:99:.:598,0,810:14,7,10,6 +chrX 1151066 . T C 1373 . AC=2;AF=0.667;AN=3;AS_AltDP=44;AS_QD=31.89;DP=103;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.89;SOR=0.784;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:64:59:0,64 1/1:0,44:44:99:.:1403,131,0:0,0,23,21 +chrX 1151121 . G A 775 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=15.78;BaseQRankSum=-0.707;DP=113;ExcessHet=0.0000;FS=19.144;MQ=60.00;MQRankSum=0;QD=15.78;ReadPosRankSum=-1.618;SOR=1.634;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:64:59:0,64 0/1:21,30:51:99:.:805,0,532:7,14,21,9 +chrX 1151186 . C G 433 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=10.07;BaseQRankSum=1.781;DP=111;ExcessHet=0.0000;FS=8.862;MQ=60.00;MQRankSum=0;QD=10.07;ReadPosRankSum=0.428;SOR=1.359;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,1771 0/1:28,18:46:99:.:463,0,755:17,11,6,12 +chrX 1151278 . C T 565 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=9.02;BaseQRankSum=-0.247;DP=129;ExcessHet=0.0000;FS=2.138;MQ=60.00;MQRankSum=0;QD=9.02;ReadPosRankSum=0.1;SOR=1.051;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,1771 0/1:42,24:66:99:.:595,0,1200:21,21,10,14 +chrX 1151291 . C G 151 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=3.18;BaseQRankSum=-1.898;DP=129;ExcessHet=0.0000;FS=5.393;MQ=60.00;MQRankSum=0;QD=3.18;ReadPosRankSum=-0.193;SOR=0.731;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 1:25,32:57:99:.:181,0:15,10,14,18 0/0:.:70:99:70:0,115,1800 +chrX 1151403 . C CGAGAGA 787.97 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=17.23;BaseQRankSum=-0.46;DP=118;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=17.23;ReadPosRankSum=-0.166;SOR=0.580;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:55:99:55:0,1080 0/1:26,22:48:99:.:827,0,985:11,15,10,12 +chrX 1151444 . GA G 129.97 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=3.60;BaseQRankSum=-2.544;DP=99;ExcessHet=0.0000;FS=6.121;MQ=60.00;MQRankSum=0;QD=3.60;ReadPosRankSum=0.188;SOR=0.784;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 1:21,26:47:99:.:169,0:13,8,11,15 0/0:.:49:99:49:0,106,1402 +chrX 1151448 . G GA 162.97 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=4.21;BaseQRankSum=-2.679;DP=99;ExcessHet=0.0000;FS=6.121;MQ=60.00;MQRankSum=0;QD=4.21;ReadPosRankSum=-0.052;SOR=0.884;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 1:21,27:48:99:.:202,0:13,8,11,16 0/0:.:49:99:49:0,106,1402 +chrX 1151461 . G A 599 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=13.10;BaseQRankSum=2.567;DP=99;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.10;ReadPosRankSum=-0.083;SOR=0.711;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:47:99:47:0,138 0/1:25,23:48:99:.:629,0,602:13,12,11,12 +chrX 1151521 . A AAGAGAGAGGAGAGAGAAAAAGAGAGGACAC 1031.97 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=25.50;BaseQRankSum=-0.476;DP=106;ExcessHet=0.0000;FS=7.200;MQ=60.00;MQRankSum=0;QD=25.50;ReadPosRankSum=-0.779;SOR=0.414;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:47:99:47:0,138 0/1:14,28:42:99:.:1071,0,506:10,4,13,15 +chrX 1151552 . A C 241 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=6.02;BaseQRankSum=-2.222;DP=94;ExcessHet=0.0000;FS=9.264;MQ=60.00;MQRankSum=0;QD=6.02;ReadPosRankSum=-0.361;SOR=1.878;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:47:99:47:0,138 0/1:30,15:45:99:.:271,0,1120:14,16,11,4 +chrX 1151714 . G T 364 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=9.61;BaseQRankSum=-2.034;DP=104;ExcessHet=0.0000;FS=6.618;MQ=59.78;MQRankSum=0.934;QD=9.61;ReadPosRankSum=0.434;SOR=1.730;VarDP=41 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:59:62:.:.:0,59 0|1:23,18:41:99:.:0|1:1151714_G_T:394,0,653:1151714:12,11,13,5 +chrX 1151737 . GAC G 2348.97 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=25.68;DP=122;ExcessHet=0.0000;FS=0.000;MQ=59.85;QD=42.64;SOR=0.922;VarDP=56 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:59:62:.:.:0,59 1|1:0,56:56:99:.:0|1:1151714_G_T:2388,168,0:1151714:0,0,31,25 +chrX 1151759 . C T 868 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=14.72;BaseQRankSum=1.039;DP=123;ExcessHet=0.0000;FS=0.000;MQ=59.85;MQRankSum=0.895;QD=14.72;ReadPosRankSum=0.293;SOR=0.641;VarDP=61 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:59:62:.:.:0,59 0|1:35,26:61:99:.:0|1:1151714_G_T:898,0,1339:1151714:18,17,13,13 +chrX 1151769 . G A 905 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=15.08;BaseQRankSum=-1.077;DP=124;ExcessHet=0.0000;FS=0.976;MQ=59.85;MQRankSum=0.94;QD=15.08;ReadPosRankSum=-0.625;SOR=0.495;VarDP=62 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:59:62:.:.:0,59 0|1:34,28:62:99:.:0|1:1151714_G_T:935,0,1291:1151714:19,15,14,14 +chrX 1151989 . T TTAAA,TAA 1498.97 . AC=1,2;AF=0.333,0.667;AN=3;AS_AltDP=28,39;AS_QD=8.44,20.68;BaseQRankSum=0.105;DP=95;ExcessHet=0.0000;FS=3.973;MQ=59.62;MQRankSum=-0.733;QD=18.31;ReadPosRankSum=-2.626;SOR=0.333;VarDP=84 GT:AD:DP:GQ:PL:SB 1:17,28,0:45:99:380,0,1094:4,13,10,18 2/2:0,0,39:39:99:1158,1159,1159,117,117,0:0,0,14,25 +chrX 1152400 . C T 714 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=13.29;BaseQRankSum=-0.529;DP=108;ExcessHet=0.0000;FS=3.736;MQ=60.00;MQRankSum=0;QD=13.29;ReadPosRankSum=-1.705;SOR=0.831;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:51:99:51:0,1211 0/1:28,28:56:99:.:744,0,735:12,16,16,12 +chrX 1152487 . C G 1035 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=16.38;BaseQRankSum=-2.137;DP=116;ExcessHet=0.0000;FS=6.813;MQ=60.00;MQRankSum=0;QD=16.38;ReadPosRankSum=0.593;SOR=0.624;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:51:99:51:0,1211 0/1:27,38:65:99:.:1065,0,743:10,17,21,17 +chrX 1152607 . G GCTCT 4082.97 . AC=2;AF=0.667;AN=3;AS_AltDP=97;AS_QD=34.07;BaseQRankSum=0.542;DP=134;ExcessHet=0.0000;FS=0.861;MQ=59.85;MQRankSum=-0.794;QD=34.07;ReadPosRankSum=0.093;SOR=0.574;VarDP=121 GT:AD:DP:GQ:PL:SB 1:0,62:62:99:2737,0:0,0,29,33 0/1:24,35:59:99:1385,0,903:13,11,19,16 +chrX 1152632 . G C 2705 . AC=2;AF=0.667;AN=3;AS_AltDP=93;AS_QD=22.60;BaseQRankSum=-0.438;DP=130;ExcessHet=0.0000;FS=0.000;MQ=59.97;MQRankSum=0;QD=22.60;ReadPosRankSum=1.195;SOR=0.665;VarDP=121 GT:AD:DP:GQ:PL:SB 1:1,57:58:99:1805,0:1,0,30,27 0/1:27,36:63:99:930,0,700:14,13,19,17 +chrX 1152757 . G A 566 . AC=1;AF=0.500;AN=2;AS_AltDP=22;AS_QD=11.92;BaseQRankSum=-0.863;DP=112;ExcessHet=0.0000;FS=2.447;MQ=57.49;MQRankSum=-0.364;QD=11.92;ReadPosRankSum=0.244;SOR=0.684;VarDP=50 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB .:.:61:0:61:.:.:0,0 0|1:28,22:50:99:.:0|1:1152757_G_A:596,0,973:1152757:16,12,10,12 +chrX 1152778 . A G 998 . AC=1;AF=0.500;AN=2;AS_AltDP=30;AS_QD=21.42;BaseQRankSum=0.239;DP=101;ExcessHet=0.0000;FS=2.578;MQ=57.78;MQRankSum=-0.219;QD=21.42;ReadPosRankSum=0.075;SOR=0.843;VarDP=48 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB .:.:53:0:53:.:.:0,0 0|1:18,30:48:99:.:0|1:1152757_G_A:1028,0,413:1152757:8,10,17,13 +chrX 1152831 . C T 735 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=31.31;BaseQRankSum=0;DP=55;ExcessHet=0.0000;FS=0.000;MQ=53.19;MQRankSum=2.005;QD=40.26;ReadPosRankSum=1.37;SOR=0.622;VarDP=19 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,18:19:99:.:765,0:0,1,6,12 0/0:.:40:34:36:0,34,962 +chrX 1152852 . G A 1276 . AC=2;AF=0.667;AN=3;AS_AltDP=33;AS_QD=21.77;BaseQRankSum=0.716;DP=60;ExcessHet=0.0000;FS=2.210;MQ=54.66;MQRankSum=2.005;QD=21.77;ReadPosRankSum=1.553;SOR=1.061;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,18:19:99:.:.:765,0:.:0,1,6,12 0|1:26,15:41:99:0|1:1152757_G_A:541,0,1047:1152757:12,14,6,9 +chrX 1152857 . G A 1203 . AC=2;AF=0.667;AN=3;AS_AltDP=30;AS_QD=22.02;BaseQRankSum=-1.82;DP=56;ExcessHet=0.0000;FS=2.305;MQ=55.04;MQRankSum=-3.445;QD=22.02;ReadPosRankSum=1.756;SOR=1.127;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,17:17:99:.:.:765,0:.:0,0,6,11 0|1:26,13:39:99:0|1:1152757_G_A:468,0,1053:1152757:12,14,5,8 +chrX 1152861 . A C 1164 . AC=2;AF=0.667;AN=3;AS_AltDP=29;AS_QD=22.53;BaseQRankSum=-0.365;DP=53;ExcessHet=0.0000;FS=2.305;MQ=55.28;MQRankSum=-3.8;QD=22.53;ReadPosRankSum=1.91;SOR=1.044;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,16:16:99:.:.:720,0:.:0,0,6,10 0|1:24,13:37:99:0|1:1152757_G_A:474,0,969:1152757:11,13,5,8 +chrX 1152862 . G A 1164 . AC=2;AF=0.667;AN=3;AS_AltDP=29;AS_QD=22.53;BaseQRankSum=0.07;DP=53;ExcessHet=0.0000;FS=2.305;MQ=55.28;MQRankSum=-3.8;QD=22.53;ReadPosRankSum=2.521;SOR=1.044;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,16:16:99:.:.:720,0:.:0,0,6,10 0|1:24,13:37:99:0|1:1152757_G_A:474,0,969:1152757:11,13,5,8 +chrX 1152870 . C T 1487 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=21.37;BaseQRankSum=-2.084;DP=71;ExcessHet=0.0000;FS=2.120;MQ=54.84;MQRankSum=-3.038;QD=21.37;ReadPosRankSum=2.6;SOR=1.041;VarDP=71 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,16:16:99:.:.:720,0:.:0,0,7,9 0|1:24,31:55:99:0|1:1152757_G_A:797,0,929:1152757:11,13,11,20 +chrX 1152871 . A G 1445 . AC=2;AF=0.667;AN=3;AS_AltDP=46;AS_QD=21.07;BaseQRankSum=-0.089;DP=70;ExcessHet=0.0000;FS=2.161;MQ=54.78;MQRankSum=-2.945;QD=21.07;ReadPosRankSum=-1.123;SOR=1.112;VarDP=70 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,16:16:99:.:.:720,0:.:0,0,7,9 0|1:24,30:54:99:0|1:1152757_G_A:755,0,932:1152757:11,13,10,20 +chrX 1152873 . T C 1398 . AC=2;AF=0.667;AN=3;AS_AltDP=45;AS_QD=20.40;BaseQRankSum=-0.586;DP=70;ExcessHet=0.0000;FS=2.067;MQ=54.78;MQRankSum=-3.018;QD=20.40;ReadPosRankSum=-1.35;SOR=0.979;VarDP=70 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,15:15:99:.:.:675,0:.:0,0,7,8 0|1:25,30:55:99:0|1:1152757_G_A:753,0,939:1152757:11,14,10,20 +chrX 1152891 . G A 1421 . AC=2;AF=0.667;AN=3;AS_AltDP=42;AS_QD=20.44;BaseQRankSum=-0.057;DP=72;ExcessHet=0.0000;FS=1.972;MQ=55.21;MQRankSum=0.371;QD=20.44;ReadPosRankSum=1.492;SOR=0.841;VarDP=71 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:2,15:17:99:.:.:625,0:.:2,0,9,6 0|1:27,27:54:99:0|1:1152757_G_A:826,0,978:1152757:13,14,10,17 +chrX 1152898 . C G 451 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=22.90;BaseQRankSum=-1.347;DP=73;ExcessHet=0.0000;FS=1.808;MQ=54.48;MQRankSum=-1.115;QD=22.90;ReadPosRankSum=1.813;SOR=0.375;VarDP=21 GT:AD:DP:GQ:MIN_DP:PL:SB 1:6,15:21:99:.:481,0:4,2,8,7 0/0:.:52:68:52:0,68,1300 +chrX 1153053 . C T 486 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=9.21;BaseQRankSum=2.05;DP=112;ExcessHet=0.0000;FS=2.325;MQ=58.80;MQRankSum=-0.138;QD=9.21;ReadPosRankSum=-0.137;SOR=0.425;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:55:68:55:0,68 0/1:36,20:56:99:.:516,0,983:15,21,10,10 +chrX 1153139 . T G 509 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=11.72;BaseQRankSum=0.19;DP=113;ExcessHet=0.0000;FS=2.678;MQ=59.85;MQRankSum=0;QD=11.72;ReadPosRankSum=1.071;SOR=0.327;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 1:17,29:46:99:.:539,0:6,11,14,15 0/0:.:62:84:62:0,84,1781 +chrX 1153148 . C T 479 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=10.18;BaseQRankSum=2.017;DP=116;ExcessHet=0.0000;FS=2.522;MQ=60.00;MQRankSum=0;QD=10.18;ReadPosRankSum=0.953;SOR=0.356;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 1:19,31:50:99:.:509,0:7,12,15,16 0/0:.:62:84:62:0,84,1781 +chrX 1153156 . A G 469 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=9.98;BaseQRankSum=-1.079;DP=117;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=9.98;ReadPosRankSum=0.14;SOR=0.593;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 1:19,31:50:99:.:499,0:8,11,14,17 0/0:.:62:84:62:0,84,1781 +chrX 1153206 . T G 452 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=9.09;BaseQRankSum=0.176;DP=119;ExcessHet=0.0000;FS=0.000;MQ=59.71;MQRankSum=-0.74;QD=9.09;ReadPosRankSum=-0.854;SOR=0.576;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 1:20,33:53:99:.:482,0:9,11,16,17 0/0:.:62:84:62:0,84,1781 +chrX 1153217 . C A 749 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=14.98;BaseQRankSum=0.551;DP=104;ExcessHet=0.0000;FS=7.660;MQ=60.00;MQRankSum=0;QD=14.98;ReadPosRankSum=-0.491;SOR=1.219;VarDP=52 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:52:99:52:.:.:0,233 0|1:30,22:52:99:.:0|1:1153217_C_A:779,0,1140:1153217:17,13,8,14 +chrX 1153227 . C T 2934 . AC=2;AF=0.667;AN=3;AS_AltDP=72;AS_QD=28.78;BaseQRankSum=0.24;DP=108;ExcessHet=0.0000;FS=4.074;MQ=60.00;MQRankSum=0;QD=28.78;ReadPosRankSum=0.88;SOR=0.579;VarDP=103 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,50:50:99:.:.:2186,0:.:0,0,25,25 0|1:31,22:53:99:0|1:1153217_C_A:778,0,1184:1153217:18,13,9,13 +chrX 1153404 . G A 231 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=5.33;BaseQRankSum=-0.838;DP=103;ExcessHet=0.0000;FS=0.000;MQ=59.06;MQRankSum=-0.91;QD=5.33;ReadPosRankSum=-0.784;SOR=0.542;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 1:20,29:49:99:.:261,0:6,14,10,19 0/0:.:54:70:54:0,70,1398 +chrX 1153478 . A AAATAAT,AAAT,AAATAATAATAATAAT 3754.97 . AC=1,1,1;AF=0.333,0.333,0.333;AN=3;AS_AltDP=41,23,22;AS_QD=29.24,33.00,34.68;DP=116;ExcessHet=0.0000;FS=0.000;MQ=59.86;QD=44.12;SOR=1.127;VarDP=86 GT:AD:DP:GQ:PL:SB 1:0,41,0,0:41:99:1816,0,1817,1817:0,0,18,23 2/3:0,0,23,22:45:99:1978,1941,1935,931,932,853,971,974,0,901:0,0,17,28 +chrX 1154025 . C T 616 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=12.67;BaseQRankSum=1.323;DP=112;ExcessHet=0.0000;FS=2.359;MQ=60.00;MQRankSum=0;QD=12.67;ReadPosRankSum=-2.169;SOR=0.420;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:30:59:0,30 0/1:28,23:51:99:.:646,0,800:17,11,12,11 +chrX 1154037 . G A 605 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=11.98;BaseQRankSum=0.723;DP=114;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=11.98;ReadPosRankSum=-2.977;SOR=0.816;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:30:59:0,30 0/1:29,24:53:99:.:635,0,764:16,13,14,10 +chrX 1154196 . T C 460 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=12.25;BaseQRankSum=-1.882;DP=102;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=12.25;ReadPosRankSum=0.514;SOR=0.693;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:30:59:0,30 0/1:20,20:40:99:.:490,0,555:6,14,6,14 +chrX 1154357 . C T 330 . AC=2;AF=0.667;AN=3;AS_AltDP=20;AS_QD=8.78;BaseQRankSum=0.536;DP=49;ExcessHet=0.0000;FS=9.709;MQ=60.00;MQRankSum=0;QD=8.78;ReadPosRankSum=-0.486;SOR=0.041;VarDP=41 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:7,14:21:99:.:.:195,0:.:0,7,3,11 0|1:14,6:20:99:0|1:1154357_C_T:165,0,538:1154357:0,14,0,6 +chrX 1154368 . A C 1254 . AC=3;AF=1.00;AN=3;AS_AltDP=35;AS_QD=34.60;DP=38;ExcessHet=0.0000;FS=0.000;MQ=59.46;QD=36.69;SOR=7.168;VarDP=35 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,16:16:99:.:.:638,0:.:0,0,0,16 1|1:0,19:19:57:0|1:1154357_C_T:646,57,0:1154357:0,0,0,19 +chrX 1154390 . T C 107 . AC=1;AF=0.333;AN=3;AS_AltDP=5;AS_QD=7.21;BaseQRankSum=0.195;DP=33;ExcessHet=0.0000;FS=0.000;MQ=55.95;MQRankSum=0.955;QD=7.21;ReadPosRankSum=0.835;SOR=0.551;VarDP=19 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:11:90:11:.:.:0,90 0|1:14,5:19:99:.:0|1:1154357_C_T:137,0,521:1154357:1,13,0,5 +chrX 1154436 . T TCCTCTCCTCTCCTCC 112.97 . AC=2;AF=0.667;AN=3;AS_AltDP=4;AS_QD=25.58;DP=20;ExcessHet=0.0000;FS=0.000;MQ=52.17;QD=38.00;SOR=3.258;VarDP=4 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:5:45:5:0,45 1/1:0,4:4:12:.:152,12,0:0,0,4,0 +chrX 1154470 . CT C 50.97 . AC=1;AF=0.333;AN=3;AS_AltDP=6;AS_QD=9.00;BaseQRankSum=0;DP=24;ExcessHet=0.0000;FS=0.000;MQ=53.67;MQRankSum=2.128;QD=9.00;ReadPosRankSum=0.411;SOR=1.085;VarDP=10 GT:AD:DP:GQ:MIN_DP:PL:SB 1:4,6:10:90:.:90,0:4,0,6,0 0/0:.:7:21:7:0,21,213 +chrX 1154486 . T TCCTCC 154.97 . AC=2;AF=0.667;AN=3;AS_AltDP=8;AS_QD=14.92;BaseQRankSum=0.833;DP=48;ExcessHet=0.0000;FS=2.276;MQ=54.36;MQRankSum=0;QD=14.92;ReadPosRankSum=0.7;SOR=1.034;VarDP=13 GT:AD:DP:GQ:PL:SB 1:0,3:3:99:99,0:0,0,2,1 0/1:5,5:10:95:95,0,144:3,2,1,4 +chrX 1154590 . T TTTTTCTTTTC 675.97 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=25.54;BaseQRankSum=-1.084;DP=86;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=25.54;ReadPosRankSum=-0.624;SOR=0.567;VarDP=28 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:48:99:48:0,336 0/1:10,18:28:99:.:715,0,366:6,4,10,8 +chrX 1154683 . G T 583 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=14.60;BaseQRankSum=1.457;DP=101;ExcessHet=0.0000;FS=3.377;MQ=60.00;MQRankSum=0;QD=14.60;ReadPosRankSum=-0.176;SOR=0.256;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:48:99:48:0,336 0/1:20,22:42:99:.:613,0,529:17,3,16,6 +chrX 1155077 . G C 89 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=2.90;BaseQRankSum=-1.435;DP=94;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=2.90;ReadPosRankSum=0.25;SOR=0.580;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 1:18,23:41:99:.:119,0:10,8,12,11 0/0:.:53:57:53:0,57,1082 +chrX 1155120 . GAAAA G 436.97 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=11.33;BaseQRankSum=1.112;DP=108;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=11.33;ReadPosRankSum=2.618;SOR=0.838;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 1:15,27:42:99:.:476,0:6,9,10,17 0/0:.:53:57:53:0,57,1082 +chrX 1155256 . A C 723 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=11.58;BaseQRankSum=0.093;DP=129;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=11.58;ReadPosRankSum=0.072;SOR=0.673;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,99 0/1:35,30:65:99:.:753,0,920:20,15,17,13 +chrX 1155979 . A ATT 534.97 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=15.11;BaseQRankSum=-0.775;DP=138;ExcessHet=0.0000;FS=11.348;MQ=57.00;MQRankSum=0.416;QD=15.11;ReadPosRankSum=-1.449;SOR=1.673;VarDP=38 GT:AD:DP:GQ:MIN_DP:PL:SB 1:11,27:38:99:.:574,0:7,4,8,19 0/0:.:44:58:44:0,58,1156 +chrX 1156232 . A G 693 . AC=2;AF=0.667;AN=3;AS_AltDP=21;AS_QD=26.78;BaseQRankSum=1.42;DP=29;ExcessHet=0.0000;FS=0.000;MQ=54.27;MQRankSum=0.179;QD=26.78;ReadPosRankSum=0.542;SOR=0.990;VarDP=27 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,11:11:99:.:.:413,0:.:0,0,5,6 0|1:6,10:16:99:0|1:1156232_A_G:310,0,150:1156232:3,3,7,3 +chrX 1156255 . A ATT 338.97 . AC=1;AF=0.333;AN=3;AS_AltDP=10;AS_QD=30.77;DP=44;ExcessHet=0.0000;FS=0.000;MQ=54.46;QD=37.80;SOR=0.693;VarDP=10 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,10:10:99:.:378,0:0,0,5,5 0/0:.:32:37:32:0,37,923 +chrX 1156322 . C G 723 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=27.89;BaseQRankSum=1.994;DP=59;ExcessHet=0.0000;FS=0.000;MQ=59.38;MQRankSum=0;QD=27.89;ReadPosRankSum=-1.221;SOR=0.368;VarDP=27 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,26:27:99:.:753,0:0,1,11,15 0/0:.:32:37:32:0,37,923 +chrX 1156476 . G A 2250 . AC=1;AF=0.333;AN=3;AS_AltDP=62;AS_QD=26.39;DP=95;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=36.77;SOR=1.057;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,62:62:99:.:2280,0:0,0,26,36 0/0:.:32:37:32:0,37,923 +chrX 1157032 . C CA 1234.97 . AC=3;AF=1.00;AN=3;AS_AltDP=65;AS_QD=19.60;DP=98;ExcessHet=0.0000;FS=0.000;MQ=59.32;QD=19.60;SOR=1.249;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,36:36:99:702,0:0,0,15,21 1/1:0,29:29:85:572,85,0:0,0,10,19 +chrX 1157457 . T C 1941 . AC=1;AF=0.333;AN=3;AS_AltDP=63;AS_QD=31.29;DP=122;ExcessHet=0.0000;FS=0.000;MQ=59.35;QD=31.29;SOR=0.724;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,63:63:99:.:1971,0:0,0,32,31 0/0:.:61:25:56:0,25,1305 +chrX 1157528 . C T 2654 . AC=1;AF=0.333;AN=3;AS_AltDP=61;AS_QD=31.27;DP=119;ExcessHet=0.0000;FS=0.000;MQ=59.55;QD=44.00;SOR=0.793;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,61:61:99:.:2684,0:0,0,32,29 0/0:.:61:25:56:0,25,1305 +chrX 1157530 . T G 2654 . AC=1;AF=0.333;AN=3;AS_AltDP=61;AS_QD=33.74;DP=119;ExcessHet=0.0000;FS=0.000;MQ=59.55;QD=44.00;SOR=0.793;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,61:61:99:.:2684,0:0,0,32,29 0/0:.:61:25:56:0,25,1305 +chrX 1157575 . A G 1865 . AC=1;AF=0.333;AN=3;AS_AltDP=58;AS_QD=32.67;DP=116;ExcessHet=0.0000;FS=0.000;MQ=59.92;QD=32.67;SOR=0.997;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,58:58:99:.:1895,0:0,0,25,33 0/0:.:61:25:56:0,25,1305 +chrX 1157783 . A G 1731 . AC=1;AF=0.333;AN=3;AS_AltDP=54;AS_QD=32.61;DP=112;ExcessHet=0.0000;FS=0.000;MQ=59.91;QD=32.61;SOR=0.767;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,54:54:99:.:1761,0:0,0,28,26 0/0:.:61:25:56:0,25,1305 +chrX 1157893 . C T 1955 . AC=1;AF=0.333;AN=3;AS_AltDP=61;AS_QD=32.02;BaseQRankSum=2.482;DP=121;ExcessHet=0.0000;FS=3.610;MQ=59.11;MQRankSum=-0.336;QD=32.02;ReadPosRankSum=1.677;SOR=0.707;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,61:62:99:.:1985,0:1,0,26,35 0/0:.:61:25:56:0,25,1305 +chrX 1157937 . C T 2087 . AC=1;AF=0.333;AN=3;AS_AltDP=65;AS_QD=32.57;DP=124;ExcessHet=0.0000;FS=0.000;MQ=59.15;QD=32.57;SOR=0.854;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,65:65:99:.:2117,0:0,0,30,35 0/0:.:61:25:56:0,25,1305 +chrX 1158264 . AAAAACAAAAC A 1551.97 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=24.95;DP=116;ExcessHet=0.0000;FS=0.000;MQ=59.72;QD=43.00;SOR=0.859;VarDP=37 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,37:37:99:.:1591,0:0,0,17,20 0/0:.:61:25:56:0,25,1305 +chrX 1158314 . A C 1522 . AC=1;AF=0.333;AN=3;AS_AltDP=50;AS_QD=31.04;DP=108;ExcessHet=0.0000;FS=0.000;MQ=59.89;QD=31.04;SOR=1.051;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,50:50:99:.:1552,0:0,0,29,21 0/0:.:61:25:56:0,25,1305 +chrX 1158810 . C T 1871 . AC=1;AF=0.333;AN=3;AS_AltDP=57;AS_QD=32.78;BaseQRankSum=2.897;DP=119;ExcessHet=0.0000;FS=0.000;MQ=59.47;MQRankSum=-0.094;QD=32.78;ReadPosRankSum=-0.717;SOR=0.478;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,57:58:99:.:1901,0:0,1,22,35 0/0:.:61:25:56:0,25,1305 +chrX 1159310 . A G 1591 . AC=1;AF=0.333;AN=3;AS_AltDP=55;AS_QD=28.95;BaseQRankSum=-0.64;DP=115;ExcessHet=0.0000;FS=3.168;MQ=59.92;MQRankSum=0;QD=28.95;ReadPosRankSum=0.186;SOR=0.395;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,55:56:99:.:1621,0:0,1,29,26 0/0:.:61:25:56:0,25,1305 +chrX 1159456 . C T 2367 . AC=1;AF=0.333;AN=3;AS_AltDP=55;AS_QD=32.63;DP=114;ExcessHet=0.0000;FS=0.000;MQ=59.63;QD=43.58;SOR=1.159;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,55:55:99:.:2397,0:0,0,22,33 0/0:.:61:25:56:0,25,1305 +chrX 1159461 . A G 2333 . AC=1;AF=0.333;AN=3;AS_AltDP=54;AS_QD=25.69;DP=113;ExcessHet=0.0000;FS=0.000;MQ=59.62;QD=43.76;SOR=1.118;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,54:54:99:.:2363,0:0,0,22,32 0/0:.:61:25:56:0,25,1305 +chrX 1159735 . AAGAG A 680.97 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=16.00;BaseQRankSum=-1.749;DP=108;ExcessHet=0.0000;FS=1.189;MQ=60.00;MQRankSum=0;QD=16.00;ReadPosRankSum=-1.328;SOR=0.410;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,1120 0/1:26,19:45:99:.:720,0,1024:10,16,9,10 +chrX 1159739 . G GAGAC,* 1569.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=36,0;AS_QD=30.39,28.86;DP=93;ExcessHet=0.0000;FS=0.000;MQ=59.74;QD=44.69;SOR=0.723;VarDP=36 GT:AD:DP:GQ:PL:SB 1:0,36,0:36:99:1609,0,1609:0,0,12,24 0/2:26,0,19:45:99:720,798,1879,0,1081,1024:10,16,9,10 +chrX 1159791 . AAGAGAC A 74.97 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=3.08;BaseQRankSum=1.493;DP=67;ExcessHet=0.0000;FS=2.937;MQ=60.00;MQRankSum=0;QD=3.08;ReadPosRankSum=-1.585;SOR=0.293;VarDP=37 GT:AD:DP:GQ:MIN_DP:PL:SB 1:17,20:37:99:.:114,0:6,11,10,10 0/0:.:45:27:24:0,27,725 +chrX 1160065 . CAGAG C 1094.97 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=31.27;BaseQRankSum=-0.762;DP=83;ExcessHet=0.0000;FS=0.000;MQ=59.95;MQRankSum=0;QD=39.10;ReadPosRankSum=0.777;SOR=0.446;VarDP=29 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,28:29:99:.:1134,0:0,1,11,17 0/0:.:45:0:45:0,0,928 +chrX 1160320 . G A,GGAGA 1984 . AC=0,2;AF=0.00,0.667;AN=3;AS_AltDP=0,51;AS_QD=0.00,30.52;BaseQRankSum=0.864;DP=85;ExcessHet=0.0000;FS=2.507;MQ=58.49;MQRankSum=4.424;QD=30.52;ReadPosRankSum=1.627;SOR=0.450;VarDP=66 GT:AD:DP:GQ:PL:SB 2:2,0,35:37:99:1382,1913,0:1,1,21,14 0/2:13,0,16:29:99:632,672,1218,0,547,498:5,8,5,11 +chrX 1160325 . GAC G 620.97 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=18.86;BaseQRankSum=-0.393;DP=98;ExcessHet=0.0000;FS=3.012;MQ=58.97;MQRankSum=1.029;QD=18.86;ReadPosRankSum=-2.088;SOR=0.306;VarDP=35 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:56:99:56:.:.:0,809 0|1:18,17:35:99:.:0|1:1160325_GAC_G:660,0,702:1160325:6,12,8,9 +chrX 1160333 . CAG C 652.97 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=19.22;BaseQRankSum=-0.153;DP=95;ExcessHet=0.0000;FS=1.348;MQ=58.89;MQRankSum=1.056;QD=19.22;ReadPosRankSum=-0.76;SOR=0.360;VarDP=36 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:56:99:56:.:.:0,809 0|1:18,18:36:99:.:0|1:1160325_GAC_G:692,0,699:1160325:6,12,8,10 +chrX 1160533 . C CAGAGAG 774.97 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=27.84;DP=81;ExcessHet=0.0000;FS=3.349;MQ=55.22;MQRankSum=-0.466;QD=35.39;SOR=2.200;VarDP=23 GT:AD:DP:GQ:MIN_DP:PL:SB 1:2,21:23:99:.:814,0:1,1,5,16 0/0:.:50:42:50:0,42,1141 +chrX 1160555 . GAGAGAC G 371.97 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=18.68;BaseQRankSum=0.491;DP=70;ExcessHet=0.0000;FS=4.652;MQ=53.63;MQRankSum=1.348;QD=18.68;ReadPosRankSum=2.231;SOR=1.856;VarDP=22 GT:AD:DP:GQ:MIN_DP:PL:SB 1:7,15:22:99:.:411,0:4,3,4,11 0/0:.:46:22:42:0,22,899 +chrX 1160796 . G GGAGA 1563.97 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=26.40;DP=102;ExcessHet=0.0000;FS=0.000;MQ=58.85;QD=44.53;SOR=0.693;VarDP=36 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,36:36:99:.:1603,0:0,0,18,18 0/0:.:41:0:41:0,0,986 +chrX 1160823 . C CAG 2394.97 . AC=1;AF=0.333;AN=3;AS_AltDP=55;AS_QD=37.92;DP=104;ExcessHet=0.0000;FS=0.000;MQ=58.79;QD=44.25;SOR=0.850;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,55:55:99:.:2434,0:0,0,18,21 0/0:.:48:24:46:0,24,1090 +chrX 1160847 . CAGAG C 1625.97 . AC=1;AF=0.333;AN=3;AS_AltDP=39;AS_QD=30.30;BaseQRankSum=1.702;DP=124;ExcessHet=0.0000;FS=3.136;MQ=59.01;MQRankSum=4.06;QD=41.63;ReadPosRankSum=0.248;SOR=0.405;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,39:40:99:.:1665,0:1,0,16,18 0/0:.:48:24:46:0,24,1090 +chrX 1161439 . G A 1921 . AC=1;AF=0.333;AN=3;AS_AltDP=59;AS_QD=33.07;DP=106;ExcessHet=0.0000;FS=0.000;MQ=59.92;QD=33.07;SOR=0.871;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,59:59:99:.:1951,0:0,0,27,32 0/0:.:48:24:46:0,24,1090 +chrX 1161504 . C CATAT 2271.97 . AC=1;AF=0.333;AN=3;AS_AltDP=53;AS_QD=33.76;BaseQRankSum=2.419;DP=105;ExcessHet=0.0000;FS=0.000;MQ=59.48;MQRankSum=4.202;QD=42.80;ReadPosRankSum=0.064;SOR=0.282;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,53:54:99:.:2311,0:1,0,26,27 0/0:.:48:24:46:0,24,1090 +chrX 1161529 . G A 2491 . AC=1;AF=0.333;AN=3;AS_AltDP=60;AS_QD=28.08;BaseQRankSum=-0.239;DP=107;ExcessHet=0.0000;FS=0.000;MQ=59.57;MQRankSum=5.431;QD=41.33;ReadPosRankSum=-1.051;SOR=0.280;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,60:61:99:.:2521,0:1,0,32,28 0/0:.:48:24:46:0,24,1090 +chrX 1161599 . CACATAT C 2547.97 . AC=1;AF=0.333;AN=3;AS_AltDP=58;AS_QD=30.74;DP=112;ExcessHet=0.0000;FS=0.000;MQ=59.69;QD=44.60;SOR=0.836;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,58:58:99:.:2587,0:0,0,27,31 0/0:.:48:24:46:0,24,1090 +chrX 1162360 . T G 2982 . AC=2;AF=0.667;AN=3;AS_AltDP=96;AS_QD=24.49;BaseQRankSum=0.261;DP=129;ExcessHet=0.0000;FS=0.836;MQ=59.96;MQRankSum=0;QD=24.49;ReadPosRankSum=-0.581;SOR=0.543;VarDP=123 GT:AD:DP:GQ:PL:SB 1:0,68:68:99:2289,0:0,0,35,33 0/1:27,28:55:99:723,0,695:17,10,21,7 +chrX 1162640 . A G 384 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=11.19;BaseQRankSum=-0.336;DP=97;ExcessHet=0.0000;FS=4.887;MQ=60.00;MQRankSum=0;QD=11.19;ReadPosRankSum=-0.307;SOR=1.119;VarDP=37 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,1220 0/1:21,16:37:99:.:414,0,586:9,12,10,6 +chrX 1162823 . G C 848 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=18.68;BaseQRankSum=1.315;DP=107;ExcessHet=0.0000;FS=4.865;MQ=60.00;MQRankSum=0;QD=18.68;ReadPosRankSum=1.473;SOR=1.609;VarDP=47 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:59:99:59:.:.:0,1220 0|1:22,25:47:99:.:0|1:1162823_G_C:878,0,829:1162823:11,11,11,5 +chrX 1162834 . A G 2128 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=29.56;BaseQRankSum=1.403;DP=97;ExcessHet=0.0000;FS=0.991;MQ=59.90;MQRankSum=0;QD=29.56;ReadPosRankSum=1.611;SOR=0.979;VarDP=73 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,35:35:99:.:.:1563,0:.:0,0,20,15 0|1:22,16:38:99:0|1:1162823_G_C:595,0,876:1162823:12,10,11,5 +chrX 1162839 . G GA 2119.97 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=29.58;BaseQRankSum=1.385;DP=99;ExcessHet=0.0000;FS=0.991;MQ=59.95;MQRankSum=0;QD=29.58;ReadPosRankSum=1.568;SOR=0.979;VarDP=73 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,35:35:99:.:.:1564,0:.:0,0,20,15 0|1:22,16:38:99:0|1:1162823_G_C:595,0,876:1162823:12,10,11,5 +chrX 1162842 . G A,GGAAAA 2738 . AC=2,0;AF=0.667,0.00;AN=3;AS_AltDP=51,0;AS_QD=34.61,24.18;BaseQRankSum=1.672;DP=98;ExcessHet=0.0000;FS=0.000;MQ=59.95;MQRankSum=0;QD=40.71;ReadPosRankSum=0.126;SOR=0.582;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,35,0:35:99:1879,0,1689:0,0,20,15 0/1:17,16,0:33:99:889,0,855,668,712,1620:11,6,11,5 +chrX 1162909 . C T 2532 . AC=2;AF=0.667;AN=3;AS_AltDP=85;AS_QD=23.50;BaseQRankSum=-0.219;DP=112;ExcessHet=0.0000;FS=1.926;MQ=59.91;MQRankSum=0;QD=23.50;ReadPosRankSum=0.849;SOR=0.951;VarDP=109 GT:AD:DP:GQ:PL:SB 1:0,54:54:99:1739,0:0,0,36,18 0/1:24,31:55:99:823,0,594:14,10,18,13 +chrX 1163128 . A G 2859 . AC=2;AF=0.667;AN=3;AS_AltDP=93;AS_QD=23.68;BaseQRankSum=2.558;DP=127;ExcessHet=0.0000;FS=1.749;MQ=59.85;MQRankSum=0;QD=23.68;ReadPosRankSum=0.586;SOR=0.492;VarDP=122 GT:AD:DP:GQ:PL:SB 1:0,60:60:99:1948,0:0,0,29,31 0/1:29,33:62:99:941,0,730:11,18,12,21 +chrX 1163520 . G T 1020 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=16.94;BaseQRankSum=-1.528;DP=119;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=16.94;ReadPosRankSum=-1.07;SOR=0.641;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:54:99:54:0,684 0/1:24,38:62:99:.:1050,0,624:11,13,18,20 +chrX 1163639 . A G 517 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=22.79;BaseQRankSum=-1.161;DP=80;ExcessHet=0.0000;FS=5.653;MQ=60.00;MQRankSum=0;QD=22.79;ReadPosRankSum=0;SOR=2.584;VarDP=24 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:54:99:54:.:.:0,684 0|1:10,14:24:99:.:0|1:1163639_A_G:547,0,365:1163639:7,3,13,1 +chrX 1163643 . G A 520 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=23.91;BaseQRankSum=-0.74;DP=79;ExcessHet=0.0000;FS=2.696;MQ=60.00;MQRankSum=0;QD=23.91;ReadPosRankSum=0.167;SOR=2.066;VarDP=23 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:54:99:54:.:.:0,684 0|1:9,14:23:99:.:0|1:1163639_A_G:550,0,336:1163639:7,2,13,1 +chrX 1163675 . GGGAGGGAC G 325.97 . AC=2;AF=0.667;AN=3;AS_AltDP=9;AS_QD=28.65;DP=73;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=40.56;SOR=1.402;VarDP=9 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:54:99:54:0,684 1/1:0,9:9:28:.:365,28,0:0,0,6,3 +chrX 1163761 . G GAGGGAGGA 1561.97 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=27.74;DP=51;ExcessHet=0.0000;FS=6.255;MQ=60.00;MQRankSum=0;QD=42.13;SOR=2.430;VarDP=38 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,37:38:99:.:1601,0:0,1,29,8 0/0:.:14:22:8:0,22,268 +chrX 1163796 . G A 699 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=20.83;BaseQRankSum=1.98;DP=86;ExcessHet=0.0000;FS=0.000;MQ=59.84;MQRankSum=1.147;QD=20.83;ReadPosRankSum=-0.949;SOR=0.727;VarDP=35 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:50:99:50:.:.:0,919 0|1:16,19:35:99:.:0|1:1163796_G_A:729,0,615:1163796:10,6,12,7 +chrX 1163801 . GA G 655.97 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=19.86;BaseQRankSum=0.216;DP=85;ExcessHet=0.0000;FS=0.000;MQ=59.84;MQRankSum=1.086;QD=19.86;ReadPosRankSum=-0.604;SOR=0.776;VarDP=35 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:50:99:50:.:.:0,919 0|1:17,18:35:99:.:0|1:1163796_G_A:695,0,648:1163796:11,6,12,6 +chrX 1163803 . AAG A 355.97 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=12.34;BaseQRankSum=-2.068;DP=88;ExcessHet=0.0000;FS=0.000;MQ=59.85;MQRankSum=0;QD=12.34;ReadPosRankSum=0.841;SOR=0.693;VarDP=32 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:50:99:50:0,919 0/1:19,13:32:99:.:395,0,741:13,6,9,4 +chrX 1163886 . T A 4284 . AC=3;AF=1.00;AN=3;AS_AltDP=97;AS_QD=31.65;DP=100;ExcessHet=0.0000;FS=0.000;MQ=59.15;QD=44.47;SOR=0.799;VarDP=97 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,40:40:99:.:.:1789,0:.:0,0,19,21 1|1:0,57:57:99:0|1:1163886_T_A:2525,172,0:1163886:0,0,32,25 +chrX 1163895 . T G 4299 . AC=3;AF=1.00;AN=3;AS_AltDP=97;AS_QD=31.08;DP=99;ExcessHet=0.0000;FS=0.000;MQ=59.14;QD=44.63;SOR=0.947;VarDP=97 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,43:43:99:.:.:1899,0:.:0,0,18,14 1|1:0,54:54:99:0|1:1163886_T_A:2430,163,0:1163886:0,0,30,24 +chrX 1163911 . G C,GAGAACAGAAC,GAACAGAACAGAACAGAAC,GAGAACAGAACAGAACAGAACAGAACAGAAC 276 . AC=0,0,1,0;AF=0.00,0.00,0.333,0.00;AN=3;AS_AltDP=0,9,10,0;AS_QD=31.75,24.22,30.60,35.87;DP=105;ExcessHet=0.0000;FS=0.000;MQ=58.16;QD=16.11;SOR=0.793;VarDP=19 GT:AD:DP:GQ:MIN_DP:PL:SB 3:0,0,9,10,0:19:88:.:306,660,88,0,249:0,0,10,9 0/0:.:53:84:53:0,84,1260,84,1260,1260,84,1260,1260,1260,84,1260,1260,1260,1260 +chrX 1163915 . A G 657 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=13.21;BaseQRankSum=-0.957;DP=113;ExcessHet=0.0000;FS=4.103;MQ=60.00;MQRankSum=0;QD=13.21;ReadPosRankSum=-0.437;SOR=1.345;VarDP=52 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:60:99:60:.:.:0,943 0|1:33,19:52:99:.:0|1:1163886_T_A:687,0,1327:1163886:18,15,13,6 +chrX 1163916 . C G 657 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=13.21;BaseQRankSum=1.204;DP=113;ExcessHet=0.0000;FS=4.103;MQ=60.00;MQRankSum=0;QD=13.21;ReadPosRankSum=-0.168;SOR=1.345;VarDP=52 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:60:99:60:.:.:0,943 0|1:33,19:52:99:.:0|1:1163886_T_A:687,0,1327:1163886:18,15,13,6 +chrX 1163948 . GAACAGAACAGA G 453.97 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=9.30;BaseQRankSum=-0.317;DP=115;ExcessHet=0.0000;FS=2.641;MQ=59.52;MQRankSum=0;QD=9.30;ReadPosRankSum=0.54;SOR=1.051;VarDP=53 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:60:99:60:.:.:0,943 0|1:38,15:53:99:.:0|1:1163886_T_A:493,0,1477:1163886:18,20,9,6 +chrX 1164150 . AG A 2093.97 . AC=1;AF=0.333;AN=3;AS_AltDP=57;AS_QD=33.75;DP=121;ExcessHet=0.0000;FS=0.000;MQ=59.75;QD=37.42;SOR=0.800;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,57:57:99:.:2133,0:0,0,27,30 0/0:.:55:62:55:0,62,1172 +chrX 1164615 . A G 314 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=7.02;BaseQRankSum=-0.554;DP=122;ExcessHet=0.0000;FS=4.541;MQ=60.00;MQRankSum=0;QD=7.02;ReadPosRankSum=0.683;SOR=0.241;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:99:68:0,1473 0/1:33,16:49:99:.:344,0,904:22,11,8,8 +chrX 1165116 . G A 2279 . AC=2;AF=0.667;AN=3;AS_AltDP=65;AS_QD=27.46;DP=133;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=35.52;SOR=1.000;VarDP=65 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:68:99:68:.:.:0,1473 1|1:0,65:65:99:.:0|1:1165116_G_A:2309,195,0:1165116:0,0,28,37 +chrX 1165150 . AATTT A 1002.97 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=15.10;BaseQRankSum=1.785;DP=141;ExcessHet=0.0000;FS=2.033;MQ=60.00;MQRankSum=0;QD=15.10;ReadPosRankSum=-0.263;SOR=0.994;VarDP=69 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:68:99:68:.:.:0,1473 0|1:41,28:69:99:.:0|1:1165116_G_A:1042,0,1637:1165116:19,22,11,17 +chrX 1165166 . T C 996 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=14.45;BaseQRankSum=0.344;DP=141;ExcessHet=0.0000;FS=1.962;MQ=60.00;MQRankSum=0;QD=14.45;ReadPosRankSum=0.114;SOR=0.942;VarDP=71 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:68:99:68:.:.:0,1473 0|1:43,28:71:99:.:0|1:1165116_G_A:1026,0,1690:1165116:21,22,12,16 +chrX 1165201 . T C 1685 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=31.18;DP=124;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.18;SOR=0.884;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:99:68:0,1473 1/1:0,55:55:99:.:1715,163,0:0,0,25,30 +chrX 1165244 . T TAATAAATTTATTAATTTATTAATTTATATTA 3188.97 . AC=2;AF=0.667;AN=3;AS_AltDP=72;AS_QD=35.69;DP=143;ExcessHet=0.0000;FS=0.000;MQ=58.72;QD=44.83;SOR=0.749;VarDP=72 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:68:99:68:.:.:0,1473 1|1:0,72:72:99:.:0|1:1165244_T_TAATAAATTTATTAATTTATTAATTTATATTA:3228,216,0:1165244:0,0,37,35 +chrX 1165257 . T A,TATTA,TATTAATTTATTAATTTATATTAAATTAATTAATTTATTA 5618 . AC=1,1,1;AF=0.333,0.333,0.333;AN=3;AS_AltDP=69,4,15;AS_QD=28.24,33.76,28.91;BaseQRankSum=1.863;DP=145;ExcessHet=0.0000;FS=3.261;MQ=59.34;MQRankSum=-0.279;QD=63.46;ReadPosRankSum=-0.435;SOR=0.442;VarDP=89 GT:AD:DP:GQ:PL:SB 1:0,69,0,0:69:99:2557,0,2557,2557:0,0,36,33 2/3:1,0,4,15:20:99:3091,2072,1915,723,731,554,299,308,0,102:0,1,11,8 +chrX 1165265 . T A 2878 . AC=2;AF=0.667;AN=3;AS_AltDP=66;AS_QD=28.20;BaseQRankSum=2.212;DP=150;ExcessHet=0.0000;FS=3.490;MQ=58.86;MQRankSum=-0.292;QD=43.40;ReadPosRankSum=-1.28;SOR=0.618;VarDP=67 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:81:99:81:.:.:0,425 1|1:1,66:67:99:.:0|1:1165244_T_TAATAAATTTATTAATTTATTAATTTATATTA:2908,186,0:1165244:0,1,37,29 +chrX 1165345 . A ATATTTATATT 2343.97 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=27.28;BaseQRankSum=-0.33;DP=139;ExcessHet=0.0000;FS=3.979;MQ=60.00;MQRankSum=0;QD=43.33;ReadPosRankSum=1.607;SOR=0.970;VarDP=55 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:81:99:81:.:.:0,425 1|1:1,54:55:99:.:0|1:1165345_A_ATATTTATATT:2383,120,0:1165345:0,1,33,21 +chrX 1165363 . C T 1860 . AC=2;AF=0.667;AN=3;AS_AltDP=42;AS_QD=24.86;DP=123;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=45.00;SOR=1.005;VarDP=42 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:81:99:81:.:.:0,425 1|1:0,42:42:99:.:0|1:1165345_A_ATATTTATATT:1890,126,0:1165345:0,0,24,18 +chrX 1165375 . T G 1635 . AC=2;AF=0.667;AN=3;AS_AltDP=37;AS_QD=32.37;DP=118;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=45.00;SOR=0.859;VarDP=37 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:81:99:81:.:.:0,425 1|1:0,37:37:99:.:0|1:1165345_A_ATATTTATATT:1665,111,0:1165345:0,0,20,17 +chrX 1165405 . T TA 1209.97 . AC=2;AF=0.667;AN=3;AS_AltDP=28;AS_QD=32.49;DP=109;ExcessHet=0.0000;FS=0.000;MQ=59.50;QD=44.61;SOR=0.997;VarDP=28 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:81:99:81:.:.:0,425 1|1:0,28:28:84:.:0|1:1165345_A_ATATTTATATT:1249,84,0:1165345:0,0,16,12 +chrX 1165464 . ATT A 2605.97 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=34.02;DP=141;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.83;SOR=0.796;VarDP=59 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:81:99:81:.:.:0,425 1|1:0,59:59:99:.:0|1:1165464_ATT_A:2645,178,0:1165464:0,0,28,31 +chrX 1165471 . A T 2750 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=26.31;DP=143;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.84;SOR=0.826;VarDP=62 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:81:99:81:.:.:0,425 1|1:0,62:62:99:.:0|1:1165464_ATT_A:2780,187,0:1165464:0,0,29,33 +chrX 1165475 . T G 2867 . AC=2;AF=0.667;AN=3;AS_AltDP=65;AS_QD=31.30;DP=146;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.57;SOR=0.854;VarDP=65 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:81:99:81:.:.:0,425 1|1:0,65:65:99:.:0|1:1165464_ATT_A:2897,196,0:1165464:0,0,30,35 +chrX 1165476 . A AAT 2857.97 . AC=2;AF=0.667;AN=3;AS_AltDP=65;AS_QD=27.15;DP=146;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.57;SOR=0.854;VarDP=65 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:81:99:81:.:.:0,425 1|1:0,65:65:99:.:0|1:1165464_ATT_A:2897,196,0:1165464:0,0,30,35 +chrX 1165560 . A G 1980 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=31.90;DP=146;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.90;SOR=1.010;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:81:99:81:0,425 1/1:0,63:63:99:.:2010,188,0:0,0,27,36 +chrX 1165632 . G T 4828 . AC=3;AF=1.00;AN=3;AS_AltDP=146;AS_QD=33.27;DP=148;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.27;SOR=0.901;VarDP=146 GT:AD:DP:GQ:PL:SB 1:0,82:82:99:2730,0:0,0,36,46 1/1:0,64:64:99:2128,192,0:0,0,30,34 +chrX 1165706 . A G 2371 . AC=1;AF=0.333;AN=3;AS_AltDP=73;AS_QD=32.89;DP=141;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.89;SOR=0.898;VarDP=73 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,73:73:99:.:2401,0:0,0,40,33 0/0:.:64:99:64:0,120,1800 +chrX 1165709 . TAATA T 2810.97 . AC=2;AF=0.667;AN=3;AS_AltDP=64;AS_QD=28.66;DP=135;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.53;SOR=0.822;VarDP=64 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:66:99:66:.:.:0,1658 1|1:0,64:64:99:.:0|1:1165709_TAATA_T:2850,193,0:1165709:0,0,34,30 +chrX 1165734 . A G 2733 . AC=2;AF=0.667;AN=3;AS_AltDP=64;AS_QD=31.83;DP=130;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.17;SOR=0.892;VarDP=64 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:66:99:66:.:.:0,1658 1|1:0,64:64:99:.:0|1:1165709_TAATA_T:2763,192,0:1165709:0,0,35,29 +chrX 1166067 . T G 558 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=10.32;BaseQRankSum=0.806;DP=126;ExcessHet=0.0000;FS=5.374;MQ=60.00;MQRankSum=0;QD=10.32;ReadPosRankSum=-0.838;SOR=0.756;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:99:66:0,1658 0/1:34,23:57:99:.:588,0,920:20,14,10,13 +chrX 1166213 . T C 2007 . AC=1;AF=0.333;AN=3;AS_AltDP=64;AS_QD=31.83;DP=129;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.83;SOR=0.822;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,64:64:99:.:2037,0:0,0,30,34 0/0:.:64:48:64:0,48,720 +chrX 1166298 . G GAT,GATT 1609.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=6,8;AS_QD=28.52,27.43;DP=115;ExcessHet=0.0000;FS=0.000;MQ=58.01;QD=117.79;SOR=0.976;VarDP=14 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:72:99:72:0,1531,1531 1/2:0,6,8:14:63:.:1649,205,82,187,0,63:0,0,8,6 +chrX 1166299 . G GT,T 2942 . AC=1,2;AF=0.333,0.667;AN=3;AS_AltDP=50,41;AS_QD=25.66,27.64;DP=106;ExcessHet=0.0000;FS=0.000;MQ=58.58;QD=32.66;SOR=0.715;VarDP=91 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,50,0:50:99:.:.:1283,0,1283:.:0,0,25,25 2|2:0,0,41:41:99:0|1:1166299_G_T:1689,1689,1689,123,123,0:1166299:0,0,21,20 +chrX 1166311 . G GT,T 2509 . AC=1,2;AF=0.333,0.667;AN=3;AS_AltDP=44,35;AS_QD=24.14,35.20;DP=95;ExcessHet=0.0000;FS=0.000;MQ=58.37;QD=32.14;SOR=0.718;VarDP=79 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,44,0:44:99:.:.:1062,0,1062:.:0,0,23,21 2|2:0,0,35:35:99:0|1:1166299_G_T:1477,1477,1477,105,105,0:1166299:0,0,17,18 +chrX 1166346 . C T 1814 . AC=2;AF=0.667;AN=3;AS_AltDP=41;AS_QD=29.64;DP=85;ExcessHet=0.0000;FS=0.000;MQ=58.15;QD=44.98;SOR=1.075;VarDP=41 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:44:70:44:.:.:0,70 1|1:0,41:41:99:.:0|1:1166346_C_T:1844,123,0:1166346:0,0,17,24 +chrX 1166354 . C T 1904 . AC=2;AF=0.667;AN=3;AS_AltDP=43;AS_QD=30.90;DP=87;ExcessHet=0.0000;FS=0.000;MQ=58.12;QD=44.98;SOR=1.055;VarDP=43 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:44:70:44:.:.:0,70 1|1:0,43:43:99:.:0|1:1166346_C_T:1934,129,0:1166346:0,0,18,25 +chrX 1166364 . A G 1928 . AC=2;AF=0.667;AN=3;AS_AltDP=44;AS_QD=35.59;DP=89;ExcessHet=0.0000;FS=0.000;MQ=58.58;QD=44.50;SOR=0.883;VarDP=44 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:44:70:44:.:.:0,70 1|1:0,44:44:99:.:0|1:1166346_C_T:1958,132,0:1166346:0,0,20,24 +chrX 1166392 . C T 3506 . AC=3;AF=1.00;AN=3;AS_AltDP=101;AS_QD=34.33;BaseQRankSum=3.289;DP=108;ExcessHet=0.0000;FS=0.000;MQ=59.04;MQRankSum=-0.423;QD=34.33;ReadPosRankSum=0.996;SOR=1.190;VarDP=103 GT:AD:DP:GQ:PL:SB 1:0,52:52:99:1967,0:0,0,18,34 1/1:2,49:51:99:1569,132,0:1,1,22,27 +chrX 1166427 . C T 85 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=2.02;BaseQRankSum=-0.126;DP=112;ExcessHet=0.0000;FS=0.000;MQ=59.03;MQRankSum=-0.21;QD=2.02;ReadPosRankSum=-1.375;SOR=0.587;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 1:27,30:57:99:.:115,0:10,17,12,18 0/0:.:53:72:53:0,72,1529 +chrX 1166446 . G T 2886 . AC=2;AF=0.667;AN=3;AS_AltDP=81;AS_QD=26.51;BaseQRankSum=3.067;DP=111;ExcessHet=0.0000;FS=1.729;MQ=59.66;MQRankSum=-0.055;QD=26.51;ReadPosRankSum=1.554;SOR=0.766;VarDP=110 GT:AD:DP:GQ:PL:SB 1:1,57:58:99:2258,0:0,1,25,32 0/1:28,24:52:99:658,0,757:15,13,13,11 +chrX 1166469 . G C 85 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=1.89;BaseQRankSum=-0.197;DP=111;ExcessHet=0.0000;FS=3.548;MQ=59.89;MQRankSum=-1.334;QD=1.89;ReadPosRankSum=-0.477;SOR=1.188;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 1:29,32:61:99:.:115,0:13,16,11,21 0/0:.:49:96:49:0,96,1370 +chrX 1166606 . A C 3175 . AC=3;AF=1.00;AN=3;AS_AltDP=99;AS_QD=32.37;DP=114;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.37;SOR=0.797;VarDP=99 GT:AD:DP:GQ:PL:SB 1:0,52:52:99:1657,0:0,0,23,29 1/1:0,47:47:99:1548,141,0:0,0,24,23 +chrX 1166689 . C A 3216 . AC=3;AF=1.00;AN=3;AS_AltDP=100;AS_QD=32.14;BaseQRankSum=2.504;DP=112;ExcessHet=0.0000;FS=5.130;MQ=60.00;MQRankSum=0;QD=32.14;ReadPosRankSum=1.733;SOR=1.704;VarDP=101 GT:AD:DP:GQ:PL:SB 1:1,50:51:99:1638,0:0,1,33,17 1/1:0,50:50:99:1608,149,0:0,0,37,13 +chrX 1166730 . T A 4449 . AC=3;AF=1.00;AN=3;AS_AltDP=105;AS_QD=30.13;DP=117;ExcessHet=0.0000;FS=0.000;MQ=59.86;QD=42.66;SOR=1.458;VarDP=105 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,49:49:99:.:.:2072,0:.:0,0,32,17 1|1:0,56:56:99:0|1:1166730_T_A:2407,169,0:1166730:0,0,36,20 +chrX 1166754 . C T 4553 . AC=3;AF=1.00;AN=3;AS_AltDP=103;AS_QD=29.14;DP=112;ExcessHet=0.0000;FS=0.000;MQ=59.85;QD=44.50;SOR=1.413;VarDP=103 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,44:44:99:.:.:1970,0:.:0,0,29,15 1|1:0,59:59:99:0|1:1166730_T_A:2613,178,0:1166730:0,0,37,22 +chrX 1166775 . G A 4634 . AC=3;AF=1.00;AN=3;AS_AltDP=110;AS_QD=31.27;DP=123;ExcessHet=0.0000;FS=0.000;MQ=59.86;QD=42.40;SOR=1.069;VarDP=110 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,46:46:99:.:.:1927,0:.:0,0,26,20 1|1:0,64:64:99:0|1:1166730_T_A:2737,193,0:1166730:0,0,38,26 +chrX 1166962 . T A 3126 . AC=3;AF=1.00;AN=3;AS_AltDP=94;AS_QD=33.57;DP=97;ExcessHet=0.0000;FS=0.000;MQ=59.95;QD=33.57;SOR=0.976;VarDP=94 GT:AD:DP:GQ:PL:SB 1:0,48:48:99:1648,0:0,0,25,23 1/1:0,46:46:99:1508,137,0:0,0,16,30 +chrX 1167036 . ATATATAATATAT A 781.97 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=18.24;BaseQRankSum=0.415;DP=96;ExcessHet=0.0000;FS=1.145;MQ=60.00;MQRankSum=0;QD=18.24;ReadPosRankSum=-0.899;SOR=0.810;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:48:99:48:0,282 0/1:23,22:45:99:.:821,0,889:12,11,10,12 +chrX 1167043 . ATATAT A,* 2953.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=48,22;AS_QD=31.40,0.00;DP=100;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=42.76;SOR=0.750;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:1251,0,1302:0,0,15,13 1/2:0,20,22:42:99:1742,890,832,828,0,889:0,0,19,23 +chrX 1167201 . ATATATTATATATAT A 3993.97 . AC=3;AF=1.00;AN=3;AS_AltDP=91;AS_QD=28.02;DP=107;ExcessHet=0.0000;FS=0.000;MQ=59.77;QD=44.32;SOR=0.855;VarDP=91 GT:AD:DP:GQ:PL:SB 1:0,52:52:99:2319,0:0,0,22,30 1/1:0,39:39:99:1714,118,0:0,0,20,19 +chrX 1167229 . T C 48 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=1.53;BaseQRankSum=-2.137;DP=104;ExcessHet=0.0000;FS=0.000;MQ=59.56;MQRankSum=0;QD=1.53;ReadPosRankSum=1.231;SOR=0.721;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 1:23,28:51:78:.:78,0:10,13,12,16 0/0:.:47:54:47:0,54,1212 +chrX 1167297 . C T 3210 . AC=3;AF=1.00;AN=3;AS_AltDP=100;AS_QD=32.40;DP=107;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.40;SOR=0.693;VarDP=100 GT:AD:DP:GQ:PL:SB 1:0,52:52:99:1675,0:0,0,24,28 1/1:0,48:48:99:1565,144,0:0,0,26,22 +chrX 1167371 . C A 3512 . AC=3;AF=1.00;AN=3;AS_AltDP=108;AS_QD=32.80;DP=111;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.80;SOR=0.808;VarDP=108 GT:AD:DP:GQ:PL:SB 1:0,52:52:99:1707,0:0,0,25,27 1/1:0,56:56:99:1835,168,0:0,0,32,24 +chrX 1168003 . TTTTC T 708.97 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=15.91;BaseQRankSum=0.388;DP=112;ExcessHet=0.0000;FS=6.465;MQ=60.00;MQRankSum=0;QD=15.91;ReadPosRankSum=-0.809;SOR=1.739;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,956 0/1:27,20:47:99:.:748,0,1040:12,15,5,15 +chrX 1168051 . CCCTT C 549.97 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=15.92;BaseQRankSum=0.475;DP=105;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=15.92;ReadPosRankSum=-0.271;SOR=0.569;VarDP=37 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,956 0/1:21,16:37:99:.:589,0,833:6,15,5,11 +chrX 1168235 . C T 2827 . AC=3;AF=1.00;AN=3;AS_AltDP=88;AS_QD=32.47;DP=94;ExcessHet=0.0000;FS=0.000;MQ=59.95;QD=32.47;SOR=1.116;VarDP=88 GT:AD:DP:GQ:PL:SB 1:0,53:53:99:1718,0:0,0,18,35 1/1:0,35:35:99:1139,105,0:0,0,18,17 +chrX 1168366 . C CTCTT 863.97 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=16.72;BaseQRankSum=0.198;DP=116;ExcessHet=0.0000;FS=3.860;MQ=60.00;MQRankSum=0;QD=16.72;ReadPosRankSum=-0.417;SOR=0.444;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:99:56:0,1308 0/1:29,25:54:99:.:903,0,1035:18,11,12,13 +chrX 1168484 . G C 965 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=16.31;BaseQRankSum=1.099;DP=121;ExcessHet=0.0000;FS=7.310;MQ=58.55;MQRankSum=-2.192;QD=16.31;ReadPosRankSum=0.445;SOR=1.744;VarDP=61 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:56:99:56:.:.:0,1308 0|1:32,29:61:99:.:0|1:1168484_G_C:995,0,1206:1168484:17,15,21,8 +chrX 1168504 . AGC A 3328.97 . AC=2;AF=0.667;AN=3;AS_AltDP=79;AS_QD=31.48;BaseQRankSum=0.133;DP=115;ExcessHet=0.0000;FS=0.000;MQ=57.79;MQRankSum=-3.494;QD=31.48;ReadPosRankSum=-0.177;SOR=0.718;VarDP=107 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,52:52:99:.:.:2329,0:.:0,0,22,30 0|1:28,27:55:99:0|1:1168484_G_C:1039,0,1094:1168484:14,14,18,9 +chrX 1168521 . C A,T 2573 . AC=2,0;AF=0.667,0.00;AN=3;AS_AltDP=54,20;AS_QD=32.54,28.96;BaseQRankSum=-0.74;DP=105;ExcessHet=0.0000;FS=0.855;MQ=57.42;MQRankSum=-3.448;QD=26.03;ReadPosRankSum=-0.951;SOR=0.560;VarDP=100 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,28,20:48:99:.:.:1590,0,258:.:0,0,21,27 0|1:26,26,0:52:99:0|1:1168484_G_C:1013,0,1013,1092,1092,2183:1168484:12,14,16,10 +chrX 1168522 . A G 3181 . AC=2;AF=0.667;AN=3;AS_AltDP=75;AS_QD=31.79;BaseQRankSum=-2.094;DP=104;ExcessHet=0.0000;FS=0.859;MQ=57.40;MQRankSum=-3.522;QD=31.79;ReadPosRankSum=-1.231;SOR=0.590;VarDP=101 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,50:50:99:.:.:2240,0:.:0,0,23,27 0|1:26,25:51:99:0|1:1168484_G_C:971,0,1006:1168484:12,14,15,10 +chrX 1168543 . C A 2982 . AC=2;AF=0.667;AN=3;AS_AltDP=74;AS_QD=29.24;BaseQRankSum=-0.378;DP=104;ExcessHet=0.0000;FS=0.000;MQ=57.47;MQRankSum=-3.404;QD=29.24;ReadPosRankSum=-0.363;SOR=0.735;VarDP=103 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,48:48:99:.:.:2048,0:.:0,0,21,27 0|1:29,26:55:99:0|1:1168484_G_C:964,0,1058:1168484:14,15,14,12 +chrX 1168654 . G A 1614 . AC=1;AF=0.333;AN=3;AS_AltDP=51;AS_QD=32.24;DP=108;ExcessHet=0.0000;FS=0.000;MQ=59.10;QD=32.24;SOR=1.094;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,51:51:99:.:1644,0:0,0,21,30 0/0:.:56:66:56:0,66,957 +chrX 1168888 . T C 1730 . AC=3;AF=1.00;AN=3;AS_AltDP=58;AS_QD=30.34;DP=88;ExcessHet=0.0000;FS=0.000;MQ=59.98;QD=30.34;SOR=1.085;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:991,0:0,0,13,20 1/1:0,25:25:75:769,75,0:0,0,11,14 +chrX 1168934 . T G 184 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=9.73;BaseQRankSum=0.628;DP=56;ExcessHet=0.0000;FS=4.200;MQ=60.00;MQRankSum=0;QD=9.73;ReadPosRankSum=1.229;SOR=0.169;VarDP=22 GT:AD:DP:GQ:MIN_DP:PL:SB 1:8,14:22:99:.:214,0:2,6,7,7 0/0:.:21:25:20:0,25,545 +chrX 1169135 . GGGA G 661.97 . AC=2;AF=0.667;AN=3;AS_AltDP=19;AS_QD=30.48;BaseQRankSum=0;DP=40;ExcessHet=0.0000;FS=16.250;MQ=58.92;MQRankSum=1.221;QD=30.48;ReadPosRankSum=0.267;SOR=5.994;VarDP=23 GT:AD:DP:GQ:PL:SB 1:2,7:9:99:216,0:0,2,7,0 0/1:2,12:14:42:485,0,42:2,0,12,0 +chrX 1169211 . G A 329 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=18.89;BaseQRankSum=0;DP=52;ExcessHet=0.0000;FS=0.000;MQ=59.30;MQRankSum=0;QD=18.89;ReadPosRankSum=0.55;SOR=0.741;VarDP=19 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:23:99:23:0,99 0/1:7,12:19:99:.:359,0,186:6,1,10,2 +chrX 1169270 . GA G 871.97 . AC=2;AF=0.667;AN=3;AS_AltDP=21;AS_QD=30.58;DP=52;ExcessHet=0.0000;FS=0.000;MQ=57.81;QD=43.38;SOR=4.712;VarDP=21 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:23:99:23:0,99 1/1:0,21:21:63:.:911,63,0:0,0,20,1 +chrX 1169278 . A AAGGAGGAGGGAGG,AAGGAGGAGGGAGGAGGAGGAGGGAGG 965.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=7,6;AS_QD=33.75,29.98;DP=59;ExcessHet=0.0000;FS=0.000;MQ=54.67;QD=77.31;SOR=5.283;VarDP=13 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:23:99:23:0,99,99 1/2:0,7,6:13:99:.:1005,278,220,319,0,266:0,0,13,0 +chrX 1169426 . G T 1793 . AC=3;AF=1.00;AN=3;AS_AltDP=76;AS_QD=18.60;BaseQRankSum=0.653;DP=106;ExcessHet=0.0000;FS=0.944;MQ=59.52;MQRankSum=0;QD=18.60;ReadPosRankSum=0.352;SOR=0.586;VarDP=98 GT:AD:DP:GQ:PL:SB 1:22,24:46:91:91,0:15,7,15,9 1/1:0,52:52:99:1732,156,0:0,0,34,18 +chrX 1169517 . G T,* 1436 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=28,2;AS_QD=26.70,0.00;BaseQRankSum=0.594;DP=99;ExcessHet=0.0000;FS=4.451;MQ=58.81;MQRankSum=0;QD=26.65;ReadPosRankSum=1.343;SOR=2.170;VarDP=55 GT:AD:DP:GQ:PL:SB 1:25,26,0:51:63:63,0,682:13,12,2,0 1/2:0,2,2:4:51:1403,176,51,178,0,55:0,0,3,1 +chrX 1169598 . C *,T 208 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=0,2;AS_QD=0.00,28.01;BaseQRankSum=0;DP=72;ExcessHet=0.0000;FS=3.979;MQ=53.90;MQRankSum=-1.036;QD=47.60;ReadPosRankSum=-1.383;SOR=0.061;VarDP=5 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:47:99:47:.:.:0,323,323 0|2:3,0,2:5:38:.:0|1:1169516_GGCTTTCAAATTTATTTCTTGCTTCCGTGATAATTGTCTTTCAAATGCATTTCTTGCTTTCTTGGAAATTA_G:238,95,508,0,85,38:1169516:3,0,1,1 +chrX 1169813 . CTT C,CT 2157.97 . AC=1,2;AF=0.333,0.667;AN=3;AS_AltDP=28,61;AS_QD=34.10,30.62;BaseQRankSum=1.349;DP=105;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=24.14;ReadPosRankSum=1.419;SOR=0.859;VarDP=91 GT:AD:DP:GQ:PL:SB 1:0,28,18:46:99:1023,0,268:0,0,26,20 2/2:2,0,43:45:90:1174,1180,1219,90,129,0:1,1,22,21 +chrX 1169845 . A AT 144.97 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=3.91;BaseQRankSum=1.637;DP=98;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=3.91;ReadPosRankSum=-1.098;SOR=0.873;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 1:20,27:47:99:.:184,0:11,9,16,11 0/0:.:47:74:47:0,74,1177 +chrX 1170083 . TTTTTTTC T 102.97 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=3.46;BaseQRankSum=-0.722;DP=109;ExcessHet=0.0000;FS=12.008;MQ=58.79;MQRankSum=-0.14;QD=3.46;ReadPosRankSum=-0.542;SOR=1.477;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 1:19,22:41:99:.:142,0:12,7,7,15 0/0:.:53:87:53:0,87,1305 +chrX 1170088 . TTC *,T 321.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=0,14;AS_QD=0.00,19.00;BaseQRankSum=0.781;DP=90;ExcessHet=0.0000;FS=17.733;MQ=59.42;MQRankSum=0;QD=19.00;ReadPosRankSum=-0.186;SOR=1.143;VarDP=19 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:19,22,0:41:99:.:.:142,0,950:.:12,7,7,15 0|2:5,0,14:19:51:0|1:1170088_TTC_T:361,376,469,0,93,51:1170088:5,0,6,8 +chrX 1170090 . C *,T 1032 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=14,5;AS_QD=0.00,31.02;DP=90;ExcessHet=0.0000;FS=5.738;MQ=59.42;QD=55.89;SOR=0.680;VarDP=19 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:19,22,0:41:99:.:.:142,0,950:.:12,7,7,15 1|2:0,14,5:19:51:1|0:1170088_TTC_T:1062,148,51,454,0,361:1170088:0,0,11,8 +chrX 1170108 . G A 327 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=8.50;BaseQRankSum=0.471;DP=103;ExcessHet=0.0000;FS=1.209;MQ=59.08;MQRankSum=-1.002;QD=8.50;ReadPosRankSum=-0.201;SOR=0.928;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 1:17,25:42:99:.:357,0:7,10,9,16 0/0:.:58:46:58:0,46,972 +chrX 1170147 . G A 280 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=6.33;BaseQRankSum=0.014;DP=108;ExcessHet=0.0000;FS=4.249;MQ=59.29;MQRankSum=-1.766;QD=6.33;ReadPosRankSum=0.93;SOR=1.473;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 1:21,28:49:99:.:310,0:10,11,9,19 0/0:.:58:46:58:0,46,972 +chrX 1170152 . C G 290 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=6.53;BaseQRankSum=-0.731;DP=108;ExcessHet=0.0000;FS=6.304;MQ=59.29;MQRankSum=-1.766;QD=6.53;ReadPosRankSum=0.647;SOR=1.718;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 1:21,28:49:99:.:320,0:10,11,8,20 0/0:.:58:46:58:0,46,972 +chrX 1170498 . G A 681 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=10.16;BaseQRankSum=-0.155;DP=123;ExcessHet=0.0000;FS=1.975;MQ=60.00;MQRankSum=0;QD=10.16;ReadPosRankSum=-0.072;SOR=0.869;VarDP=70 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:51:51:0,51 0/1:41,29:70:99:.:711,0,1094:21,20,13,16 +chrX 1171074 . G T 512 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=9.68;BaseQRankSum=1.037;DP=108;ExcessHet=0.0000;FS=3.970;MQ=60.00;MQRankSum=0;QD=9.68;ReadPosRankSum=0.034;SOR=0.299;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:51:51:0,51 0/1:35,21:56:99:.:542,0,978:12,23,10,11 +chrX 1172163 . C T 1615 . AC=3;AF=1.00;AN=3;AS_AltDP=77;AS_QD=15.37;BaseQRankSum=1.398;DP=112;ExcessHet=0.0000;FS=0.000;MQ=59.98;MQRankSum=0;QD=15.37;ReadPosRankSum=0.874;SOR=0.753;VarDP=107 GT:AD:DP:GQ:PL:SB 1:30,32:62:99:141,0:12,18,14,18 1/1:0,45:45:99:1504,135,0:0,0,16,29 +chrX 1172371 . C A 681 . AC=2;AF=0.667;AN=3;AS_AltDP=41;AS_QD=8.89;BaseQRankSum=1.327;DP=81;ExcessHet=0.0000;FS=5.676;MQ=60.00;MQRankSum=0;QD=8.89;ReadPosRankSum=-0.165;SOR=0.410;VarDP=80 GT:AD:DP:GQ:PL:SB 1:18,24:42:99:234,0:9,9,11,13 0/1:21,17:38:99:477,0,581:15,6,9,8 +chrX 1172435 . T G 383 . AC=1;AF=0.500;AN=2;AS_AltDP=16;AS_QD=11.80;BaseQRankSum=-1.523;DP=93;ExcessHet=0.0000;FS=5.023;MQ=60.00;MQRankSum=0;QD=11.80;ReadPosRankSum=0.133;SOR=1.109;VarDP=35 GT:AD:DP:GQ:MIN_DP:PL:SB .:.:54:0:54:0,0 0/1:19,16:35:99:.:413,0,532:8,11,10,6 +chrX 1172510 . C G 1009 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=10.19;BaseQRankSum=1.215;DP=104;ExcessHet=0.0000;FS=2.578;MQ=59.85;MQRankSum=0;QD=10.19;ReadPosRankSum=0.945;SOR=0.802;VarDP=102 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:25,28:53:98:.:.:98,0:.:14,11,15,13 0|1:24,25:49:99:0|1:1172510_C_G:941,0,909:1172510:9,15,14,11 +chrX 1172513 . T G 976 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=9.96;BaseQRankSum=-0.734;DP=102;ExcessHet=0.0000;FS=2.576;MQ=59.84;MQRankSum=0;QD=9.96;ReadPosRankSum=1.145;SOR=0.759;VarDP=101 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:25,27:52:65:.:.:65,0:.:14,11,14,13 0|1:24,25:49:99:0|1:1172510_C_G:941,0,909:1172510:9,15,14,11 +chrX 1173463 . C G 3879 . AC=3;AF=1.00;AN=3;AS_AltDP=124;AS_QD=31.27;BaseQRankSum=2.19;DP=127;ExcessHet=0.0000;FS=0.000;MQ=58.71;MQRankSum=2.874;QD=31.27;ReadPosRankSum=-0.595;SOR=0.481;VarDP=125 GT:AD:DP:GQ:PL:SB 1:1,66:67:99:2089,0:1,0,41,25 1/1:0,58:58:99:1820,173,0:0,0,35,23 +chrX 1173475 . G A,T 4223 . AC=3,0;AF=1.00,0.00;AN=3;AS_AltDP=124,0;AS_QD=34.30,25.69;DP=131;ExcessHet=0.0000;FS=0.000;MQ=58.75;QD=34.30;SOR=0.981;VarDP=124 GT:AD:DP:GQ:PL:SB 1:0,68,0:68:99:2202,0,2202:0,0,40,28 1/1:0,56,0:56:99:2051,168,0,2152,172,2565:0,0,30,26 +chrX 1173483 . G A 607 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=12.02;BaseQRankSum=1.594;DP=135;ExcessHet=0.0000;FS=3.854;MQ=58.02;MQRankSum=-0.944;QD=12.02;ReadPosRankSum=1.364;SOR=1.058;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:79:99:79:0,1800 0/1:28,25:53:99:.:637,0,670:13,15,15,10 +chrX 1173764 . C T 1112 . AC=1;AF=1.00;AN=1;AS_AltDP=49;AS_QD=16.08;BaseQRankSum=3.613;DP=141;ExcessHet=0.0000;FS=8.124;MQ=50.20;MQRankSum=2.538;QD=16.08;ReadPosRankSum=-1.008;SOR=1.855;VarDP=71 GT:AD:DP:GQ:MIN_DP:PL:SB 1:22,49:71:99:.:1142,0:9,13,11,38 ./.:.:70:0:70:0,0,0 +chrX 1173766 . C G 1112 . AC=1;AF=1.00;AN=1;AS_AltDP=50;AS_QD=15.64;BaseQRankSum=2.53;DP=142;ExcessHet=0.0000;FS=7.927;MQ=49.89;MQRankSum=2.456;QD=15.64;ReadPosRankSum=-1.129;SOR=1.781;VarDP=73 GT:AD:DP:GQ:MIN_DP:PL:SB 1:23,50:73:99:.:1142,0:9,14,11,39 ./.:.:69:0:69:0,0,0 +chrX 1173773 . C T 1017 . AC=1;AF=1.00;AN=1;AS_AltDP=46;AS_QD=15.40;BaseQRankSum=2.52;DP=142;ExcessHet=0.0000;FS=8.292;MQ=48.39;MQRankSum=2.032;QD=15.40;ReadPosRankSum=-0.978;SOR=1.824;VarDP=68 GT:AD:DP:GQ:MIN_DP:PL:SB 1:22,46:68:99:.:1047,0:8,14,9,37 ./.:.:74:0:74:0,0,0 +chrX 1173812 . G A 459 . AC=1;AF=1.00;AN=1;AS_AltDP=34;AS_QD=8.43;BaseQRankSum=2.199;DP=128;ExcessHet=0.0000;FS=3.029;MQ=43.22;MQRankSum=0.807;QD=8.43;ReadPosRankSum=-1.246;SOR=1.480;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 1:24,34:58:99:.:489,0:6,18,5,29 ./.:.:70:0:70:0,0,0 +chrX 1173832 . T C 449 . AC=1;AF=1.00;AN=1;AS_AltDP=31;AS_QD=9.39;BaseQRankSum=1.738;DP=111;ExcessHet=0.0000;FS=3.132;MQ=41.03;MQRankSum=-0.068;QD=9.39;ReadPosRankSum=-0.099;SOR=1.347;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 1:20,31:51:99:.:479,0:5,15,5,26 ./.:.:60:0:60:0,0,0 +chrX 1173852 . T C 674 . AC=1;AF=1.00;AN=1;AS_AltDP=34;AS_QD=13.54;BaseQRankSum=1.508;DP=107;ExcessHet=0.0000;FS=1.412;MQ=42.24;MQRankSum=0.174;QD=13.54;ReadPosRankSum=0.602;SOR=1.067;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 1:18,34:52:99:.:704,0:4,14,6,28 ./.:.:55:0:55:0,0,0 +chrX 1173853 . G C 629 . AC=1;AF=1.00;AN=1;AS_AltDP=33;AS_QD=12.92;BaseQRankSum=0.823;DP=106;ExcessHet=0.0000;FS=1.384;MQ=42.31;MQRankSum=0.218;QD=12.92;ReadPosRankSum=0.631;SOR=1.022;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 1:18,33:51:99:.:659,0:4,14,6,27 ./.:.:55:0:55:0,0,0 +chrX 1173858 . G C 584 . AC=1;AF=1.00;AN=1;AS_AltDP=32;AS_QD=12.28;BaseQRankSum=1.706;DP=108;ExcessHet=0.0000;FS=0.000;MQ=42.27;MQRankSum=0.152;QD=12.28;ReadPosRankSum=1.316;SOR=0.976;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 1:18,32:50:99:.:614,0:4,14,6,26 ./.:.:58:0:58:0,0,0 +chrX 1174685 . G T 547 . AC=2;AF=0.667;AN=3;AS_AltDP=29;AS_QD=13.42;BaseQRankSum=0;DP=46;ExcessHet=0.0000;FS=0.000;MQ=33.81;MQRankSum=1.065;QD=13.42;ReadPosRankSum=0.889;SOR=1.609;VarDP=43 GT:AD:DP:GQ:PL:SB 1:9,12:21:72:72,0:9,0,12,0 0/1:5,17:22:99:505,0,103:5,0,17,0 +chrX 1174904 . G A 733 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=11.74;BaseQRankSum=2.383;DP=129;ExcessHet=0.0000;FS=0.000;MQ=59.35;MQRankSum=0.171;QD=11.74;ReadPosRankSum=1.142;SOR=0.676;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,423 0/1:36,29:65:99:.:763,0,892:16,20,13,16 +chrX 1175513 . G A 3642 . AC=3;AF=1.00;AN=3;AS_AltDP=114;AS_QD=32.21;DP=123;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.21;SOR=1.009;VarDP=114 GT:AD:DP:GQ:PL:SB 1:0,53:53:99:1712,0:0,0,20,33 1/1:0,61:61:99:1960,182,0:0,0,29,32 +chrX 1175582 . CT C 3066.97 . AC=3;AF=1.00;AN=3;AS_AltDP=100;AS_QD=31.06;DP=108;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.06;SOR=0.863;VarDP=100 GT:AD:DP:GQ:PL:SB 1:0,45:45:99:1394,0:0,0,23,22 1/1:0,55:55:99:1712,165,0:0,0,23,32 +chrX 1176207 . ATATAT A 4077.97 . AC=3;AF=1.00;AN=3;AS_AltDP=94;AS_QD=29.83;BaseQRankSum=-0.229;DP=107;ExcessHet=0.0000;FS=2.087;MQ=60.00;MQRankSum=0;QD=42.01;ReadPosRankSum=1.66;SOR=0.240;VarDP=98 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,48:49:99:.:.:2125,0:.:0,1,24,24 1|1:3,46:49:99:0|1:1176207_ATATAT_A:1992,106,0:1176207:3,0,24,22 +chrX 1176243 . T TTTA 4002.97 . AC=3;AF=1.00;AN=3;AS_AltDP=90;AS_QD=30.16;DP=92;ExcessHet=0.0000;FS=0.000;MQ=59.80;QD=44.91;SOR=0.832;VarDP=90 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,42:42:99:.:.:1882,0:.:0,0,23,19 1|1:0,48:48:99:0|1:1176207_ATATAT_A:2160,144,0:1176207:0,0,25,23 +chrX 1176267 . A T 1222 . AC=2;AF=0.667;AN=3;AS_AltDP=49;AS_QD=14.90;BaseQRankSum=-1.261;DP=87;ExcessHet=0.0000;FS=0.826;MQ=59.77;MQRankSum=1.18;QD=14.90;ReadPosRankSum=1.685;SOR=0.577;VarDP=84 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:17,26:43:99:.:.:390,0:.:9,8,11,15 0|1:18,23:41:99:0|1:1176207_ATATAT_A:862,0,687:1176207:7,11,13,10 +chrX 1176272 . A G 1189 . AC=2;AF=0.667;AN=3;AS_AltDP=48;AS_QD=14.69;BaseQRankSum=-1.9;DP=84;ExcessHet=0.0000;FS=0.838;MQ=59.77;MQRankSum=1.18;QD=14.69;ReadPosRankSum=1.293;SOR=0.544;VarDP=83 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:17,25:42:99:.:.:357,0:.:9,8,11,14 0|1:18,23:41:99:0|1:1176207_ATATAT_A:862,0,687:1176207:7,11,13,10 +chrX 1176274 . T A 1203 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=15.22;BaseQRankSum=1.58;DP=83;ExcessHet=0.0000;FS=0.000;MQ=59.76;MQRankSum=1.156;QD=15.22;ReadPosRankSum=1.116;SOR=0.625;VarDP=81 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:16,25:41:99:.:.:392,0:.:9,7,11,14 0|1:18,22:40:99:0|1:1176207_ATATAT_A:841,0,690:1176207:7,11,12,10 +chrX 1176288 . T TATA,TATAAGAAAATAATAAAATATTATA 2685.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=39,24;AS_QD=27.22,33.21;DP=94;ExcessHet=0.0000;FS=0.000;MQ=59.99;QD=43.25;SOR=0.790;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,21,13:34:99:1159,0,215:0,0,16,18 1/2:0,18,11:29:99:1566,486,657,751,0,688:0,0,14,15 +chrX 1176329 . A ATATTATAAAATAATAATAATATATTAT,ATATTATAAAATAATAATAATATATTATTATTATAAAATAATAATAATATATTAT 2378.97 . AC=1,2;AF=0.333,0.667;AN=3;AS_AltDP=9,18;AS_QD=28.72,33.60;DP=116;ExcessHet=0.0000;FS=0.000;MQ=59.25;QD=89.56;SOR=0.765;VarDP=27 GT:AD:DP:GQ:PL:SB 2:0,3,12:15:99:1317,335,0:0,0,9,6 1/2:0,6,6:12:99:1101,213,148,299,0,243:0,0,5,7 +chrX 1176703 . G C 725 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=11.80;BaseQRankSum=-0.497;DP=136;ExcessHet=0.0000;FS=0.950;MQ=59.82;MQRankSum=0;QD=11.80;ReadPosRankSum=1.109;SOR=0.846;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,199 0/1:33,31:64:99:.:755,0,851:14,19,12,19 +chrX 1176929 . C T 571 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=5.51;BaseQRankSum=0.953;DP=111;ExcessHet=0.0000;FS=0.000;MQ=59.15;MQRankSum=-1.06;QD=5.51;ReadPosRankSum=-0.21;SOR=0.730;VarDP=109 GT:AD:DP:GQ:PL:SB 1:32,33:65:64:64,0:14,18,19,14 0/1:23,21:44:99:537,0,603:14,9,9,12 +chrX 1176950 . A G 530 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=11.91;BaseQRankSum=0.972;DP=114;ExcessHet=0.0000;FS=4.144;MQ=58.95;MQRankSum=-0.022;QD=11.91;ReadPosRankSum=0.053;SOR=0.956;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:99:66:0,254 0/1:25,22:47:99:.:560,0,608:14,11,9,13 +chrX 1176965 . A G 3565 . AC=3;AF=1.00;AN=3;AS_AltDP=110;AS_QD=32.68;DP=116;ExcessHet=0.0000;FS=0.000;MQ=59.14;QD=32.68;SOR=0.693;VarDP=110 GT:AD:DP:GQ:PL:SB 1:0,67:67:99:2236,0:0,0,36,31 1/1:0,43:43:99:1359,129,0:0,0,19,24 +chrX 1177509 . AT A 895.97 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=8.35;BaseQRankSum=-0.123;DP=115;ExcessHet=0.0000;FS=1.519;MQ=60.00;MQRankSum=0;QD=8.35;ReadPosRankSum=1.783;SOR=0.510;VarDP=112 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:30,34:64:99:.:.:180,0:.:10,20,17,17 0|1:27,21:48:99:0|1:1177509_AT_A:755,0,1017:1177509:15,12,10,11 +chrX 1177537 . TATA T 1134.97 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=10.67;BaseQRankSum=1.013;DP=110;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=10.67;ReadPosRankSum=0.589;SOR=0.686;VarDP=110 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:27,34:61:99:.:.:323,0:.:12,15,18,16 0|1:26,23:49:99:0|1:1177509_AT_A:851,0,1000:1177509:16,10,12,11 +chrX 1177565 . A C 436 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=10.13;BaseQRankSum=-2.236;DP=106;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=10.13;ReadPosRankSum=0.129;SOR=0.763;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:57:99:57:0,313 0/1:25,21:46:99:.:466,0,979:15,10,13,8 +chrX 1177597 . C T 868 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=9.55;BaseQRankSum=1.18;DP=95;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=9.55;ReadPosRankSum=1.628;SOR=0.711;VarDP=94 GT:AD:DP:GQ:PL:SB 1:18,33:51:99:238,0:10,8,18,15 0/1:18,25:43:99:660,0,592:11,7,16,9 +chrX 1177712 . G A 2791 . AC=3;AF=1.00;AN=3;AS_AltDP=82;AS_QD=34.40;DP=86;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=34.40;SOR=0.693;VarDP=82 GT:AD:DP:GQ:PL:SB 1:0,59:59:99:2011,0:0,0,29,30 1/1:0,23:23:68:810,68,0:0,0,12,11 +chrX 1177753 . A ATATTATATATCATAATTATATTATATTATTATAATATGTAT 881.97 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=15.88;BaseQRankSum=0.368;DP=125;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=15.88;ReadPosRankSum=-1.631;SOR=0.576;VarDP=58 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:99:62:.:.:0,342 0|1:22,36:58:99:.:0|1:1177753_A_ATATTATATATCATAATTATATTATATTATTATAATATGTAT:921,0,829:1177753:9,13,16,20 +chrX 1177793 . AATATG A 1000.97 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=19.26;BaseQRankSum=0.774;DP=120;ExcessHet=0.0000;FS=7.625;MQ=60.00;MQRankSum=0;QD=19.26;ReadPosRankSum=-0.588;SOR=1.156;VarDP=54 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:99:62:.:.:0,342 0|1:27,27:54:99:.:0|1:1177753_A_ATATTATATATCATAATTATATTATATTATTATAATATGTAT:1040,0,1040:1177753:11,16,17,10 +chrX 1177798 . G A,* 2865 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=59,27;AS_QD=31.44,0.00;DP=115;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.66;SOR=0.693;VarDP=86 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1076,0,1303:0,0,15,19 1/2:0,25,27:52:99:1819,1122,1040,706,0,1040:0,0,28,24 +chrX 1178011 . C T 354 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=9.85;BaseQRankSum=0.926;DP=82;ExcessHet=0.0000;FS=0.000;MQ=59.62;MQRankSum=-0.34;QD=9.85;ReadPosRankSum=0.491;SOR=0.664;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:41:20:40:0,20 0/1:24,15:39:99:.:384,0,642:8,16,5,10 +chrX 1178158 . A T,* 2779 . AC=3,0;AF=1.00,0.00;AN=3;AS_AltDP=46,0;AS_QD=27.41,32.66;DP=70;ExcessHet=0.0000;FS=0.000;MQ=54.21;QD=61.07;SOR=0.892;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,41,0:41:99:.:.:1600,0,1111:.:0,0,7,8 1|1:0,5,0:5:9:0|1:1178158_A_*:1209,87,0,255,9,188:1178158:0,0,2,3 +chrX 1178182 . TATAAA T 2771.97 . AC=3;AF=1.00;AN=3;AS_AltDP=70;AS_QD=29.81;DP=72;ExcessHet=0.0000;FS=0.000;MQ=54.38;QD=40.16;SOR=0.892;VarDP=70 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,41:41:99:.:.:1600,0:.:0,0,7,8 1|1:0,29:29:88:0|1:1178158_A_*:1211,88,0:1178158:0,0,2,3 +chrX 1178194 . TTATATTATATTATTGTATATGA T 1486.97 . AC=3;AF=1.00;AN=3;AS_AltDP=45;AS_QD=33.91;DP=95;ExcessHet=0.0000;FS=0.000;MQ=54.90;QD=33.91;SOR=0.892;VarDP=45 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,25:25:99:.:.:866,0:.:0,0,7,8 1|1:0,20:20:61:0|1:1178158_A_*:660,61,0:1178158:0,0,2,3 +chrX 1178477 . A ATATATAATTATATATTATAATTATATTATATTATTT,ATATATAATTATATATTATAATTATATTATATTATTATATATAATTATATATTATAATTATATTATATTATTT 309.97 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=0,5;AS_QD=2.07,17.45;BaseQRankSum=1.687;DP=94;ExcessHet=0.0000;FS=2.199;MQ=55.43;MQRankSum=0.693;QD=17.45;ReadPosRankSum=-1.661;SOR=1.781;VarDP=20 GT:AD:DP:GQ:MIN_DP:PL:SB 2:15,0,5:20:99:.:349,318,0:8,7,4,1 0/0:.:36:0:36:0,0,10,0,10,10 +chrX 1179123 . A AT 3210.97 . AC=3;AF=1.00;AN=3;AS_AltDP=116;AS_QD=28.02;DP=136;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=28.02;SOR=1.140;VarDP=116 GT:AD:DP:GQ:PL:SB 1:0,63:63:99:1775,0:0,0,41,22 1/1:0,53:53:99:1475,159,0:0,0,28,25 +chrX 1179302 . T C 2137 . AC=2;AF=0.667;AN=3;AS_AltDP=73;AS_QD=22.81;BaseQRankSum=1.247;DP=96;ExcessHet=0.0000;FS=3.311;MQ=57.39;MQRankSum=1.682;QD=22.81;ReadPosRankSum=1.277;SOR=0.848;VarDP=95 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:13,45:58:99:.:.:1430,0:.:6,7,19,26 0|1:9,28:37:99:0|1:1179302_T_C:737,0,254:1179302:6,3,13,15 +chrX 1179304 . C T 2537 . AC=2;AF=0.667;AN=3;AS_AltDP=75;AS_QD=27.02;BaseQRankSum=1.745;DP=96;ExcessHet=0.0000;FS=3.438;MQ=57.39;MQRankSum=2.205;QD=27.02;ReadPosRankSum=1.781;SOR=0.830;VarDP=95 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:13,45:58:99:.:.:1430,0:.:6,7,19,26 0|1:7,30:37:89:0|1:1179302_T_C:1137,0,89:1179302:5,2,14,16 +chrX 1179323 . A AT 875.97 . AC=1;AF=0.333;AN=3;AS_AltDP=42;AS_QD=14.30;BaseQRankSum=0.577;DP=122;ExcessHet=0.0000;FS=1.008;MQ=55.94;MQRankSum=0.486;QD=14.30;ReadPosRankSum=0.897;SOR=0.650;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 1:22,42:64:99:.:915,0:12,10,20,22 0/0:.:55:38:55:0,38,1530 +chrX 1179493 . A AT 947.97 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=10.18;BaseQRankSum=0.295;DP=122;ExcessHet=0.0000;FS=2.658;MQ=56.82;MQRankSum=1.576;QD=10.18;ReadPosRankSum=0.448;SOR=0.471;VarDP=97 GT:AD:DP:GQ:PL:SB 1:17,30:47:99:386,0:7,10,15,15 0/1:23,27:50:99:601,0,471:10,13,13,14 +chrX 1179814 . A G 3722 . AC=3;AF=1.00;AN=3;AS_AltDP=115;AS_QD=32.63;DP=120;ExcessHet=0.0000;FS=0.000;MQ=59.42;QD=32.63;SOR=0.710;VarDP=115 GT:AD:DP:GQ:PL:SB 1:0,71:71:99:2349,0:0,0,32,39 1/1:0,44:44:99:1403,132,0:0,0,25,19 +chrX 1179950 . G A 1534 . AC=2;AF=0.667;AN=3;AS_AltDP=49;AS_QD=30.67;BaseQRankSum=3.347;DP=122;ExcessHet=0.0000;FS=7.833;MQ=58.81;MQRankSum=-0.297;QD=30.67;ReadPosRankSum=-0.874;SOR=0.922;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:90:68:0,90 1/1:2,49:51:99:.:1564,132,0:2,0,19,30 +chrX 1180083 . G A 1896 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=30.03;BaseQRankSum=2.734;DP=123;ExcessHet=0.0000;FS=0.000;MQ=59.40;MQRankSum=3.029;QD=36.34;ReadPosRankSum=-0.556;SOR=0.693;VarDP=53 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:68:90:68:.:.:0,90 1|1:1,52:53:99:.:0|1:1180083_G_A:1926,149,0:1180083:0,1,17,35 +chrX 1180104 . G C 539 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=11.16;BaseQRankSum=1.78;DP=120;ExcessHet=0.0000;FS=4.197;MQ=59.42;MQRankSum=-0.326;QD=11.16;ReadPosRankSum=-0.067;SOR=1.405;VarDP=51 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:68:90:68:.:.:0,90 0|1:29,22:51:99:.:0|1:1180083_G_A:569,0,691:1180083:12,17,6,16 +chrX 1180735 . G A 723 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=12.15;BaseQRankSum=2.562;DP=132;ExcessHet=0.0000;FS=2.143;MQ=59.62;MQRankSum=1.669;QD=12.15;ReadPosRankSum=0.191;SOR=0.531;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:90:68:0,90 0/1:33,29:62:99:.:753,0,735:19,14,14,15 +chrX 1180859 . C G 388 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=9.50;BaseQRankSum=-1.683;DP=112;ExcessHet=0.0000;FS=2.661;MQ=59.79;MQRankSum=-1.156;QD=9.50;ReadPosRankSum=0.203;SOR=0.350;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:90:68:0,90 0/1:26,18:44:99:.:418,0,966:16,10,9,9 +chrX 1180873 . CA C 189.97 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=5.45;BaseQRankSum=-3.127;DP=123;ExcessHet=0.0000;FS=0.000;MQ=59.21;MQRankSum=-0.47;QD=5.45;ReadPosRankSum=0.059;SOR=0.527;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:90:68:0,90 0/1:28,14:42:99:.:229,0,905:19,9,9,5 +chrX 1180877 . A C 740 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=15.10;BaseQRankSum=2.28;DP=121;ExcessHet=0.0000;FS=3.959;MQ=59.18;MQRankSum=2.206;QD=15.10;ReadPosRankSum=0.37;SOR=1.295;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:90:68:0,90 0/1:24,27:51:99:.:770,0,774:13,11,18,9 +chrX 1181048 . G C 4169 . AC=3;AF=1.00;AN=3;AS_AltDP=130;AS_QD=32.30;DP=133;ExcessHet=0.0000;FS=0.000;MQ=59.44;QD=32.30;SOR=0.929;VarDP=130 GT:AD:DP:GQ:PL:SB 1:0,69:69:99:2149,0:0,0,34,35 1/1:0,61:61:99:2050,183,0:0,0,38,23 +chrX 1181117 . G A 870 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=7.03;BaseQRankSum=1.367;DP=131;ExcessHet=0.0000;FS=5.475;MQ=59.24;MQRankSum=0;QD=7.03;ReadPosRankSum=1.757;SOR=1.200;VarDP=128 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:34,34:68:77:.:.:77,0:.:18,16,16,18 0|1:37,23:60:99:0|1:1181117_G_A:823,0,1382:1181117:18,19,19,4 +chrX 1181132 . C A 928 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=7.73;BaseQRankSum=0.255;DP=129;ExcessHet=0.0000;FS=15.145;MQ=59.36;MQRankSum=0;QD=7.73;ReadPosRankSum=2.092;SOR=1.318;VarDP=124 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:30,34:64:99:.:.:169,0:.:14,16,19,15 0|1:38,22:60:99:0|1:1181117_G_A:789,0,1417:1181117:16,22,17,5 +chrX 1181345 . A G 4894 . AC=3;AF=1.00;AN=3;AS_AltDP=153;AS_QD=32.18;DP=160;ExcessHet=0.0000;FS=0.000;MQ=59.91;QD=32.18;SOR=0.788;VarDP=153 GT:AD:DP:GQ:PL:SB 1:0,67:67:99:2188,0:0,0,33,34 1/1:0,86:86:99:2736,258,0:0,0,40,46 +chrX 1181512 . T C 3685 . AC=3;AF=1.00;AN=3;AS_AltDP=117;AS_QD=31.75;DP=122;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.75;SOR=0.818;VarDP=117 GT:AD:DP:GQ:PL:SB 1:0,55:55:99:1756,0:0,0,23,32 1/1:0,62:62:99:1959,186,0:0,0,32,30 +chrX 1181546 . C T 94 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=2.48;BaseQRankSum=2.193;DP=116;ExcessHet=0.0000;FS=1.096;MQ=60.00;MQRankSum=0;QD=2.48;ReadPosRankSum=0.525;SOR=1.022;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 1:24,26:50:99:.:124,0:12,12,11,15 0/0:.:63:99:63:0,120,1800 +chrX 1181622 . G T 659 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=11.88;BaseQRankSum=1.158;DP=109;ExcessHet=0.0000;FS=9.522;MQ=60.00;MQRankSum=0;QD=11.88;ReadPosRankSum=-0.837;SOR=0.730;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:50:99:50:0,1475 0/1:32,26:58:99:.:689,0,848:21,11,11,15 +chrX 1181764 . G A 842 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=14.06;BaseQRankSum=3.035;DP=114;ExcessHet=0.0000;FS=0.984;MQ=60.00;MQRankSum=0;QD=14.06;ReadPosRankSum=0.176;SOR=0.475;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:50:99:50:0,1475 0/1:31,31:62:99:.:872,0,756:12,19,14,17 +chrX 1181794 . G C 1124 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=9.16;BaseQRankSum=2.942;DP=134;ExcessHet=0.0000;FS=1.423;MQ=59.96;MQRankSum=0;QD=9.16;ReadPosRankSum=-0.178;SOR=0.897;VarDP=126 GT:AD:DP:GQ:PL:SB 1:24,35:59:99:393,0:10,14,14,21 0/1:39,28:67:99:761,0,1024:20,19,13,15 +chrX 1181871 . G C 803 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=13.22;BaseQRankSum=1.646;DP=124;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.22;ReadPosRankSum=0.344;SOR=0.789;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:58:74:58:0,74 0/1:33,30:63:99:.:833,0,887:19,14,18,12 +chrX 1181907 . G A 1925 . AC=1;AF=0.333;AN=3;AS_AltDP=61;AS_QD=32.05;DP=125;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.05;SOR=1.727;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,61:61:99:.:1955,0:0,0,42,19 0/0:.:59:99:59:0,120,1800 +chrX 1181950 . A G 660 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=12.32;BaseQRankSum=-0.922;DP=121;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=12.32;ReadPosRankSum=-0.689;SOR=0.693;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,1800 0/1:28,28:56:99:.:690,0,735:17,11,17,11 +chrX 1182131 . A G 675 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=12.59;BaseQRankSum=0.556;DP=144;ExcessHet=0.0000;FS=1.031;MQ=60.00;MQRankSum=0;QD=12.59;ReadPosRankSum=-0.222;SOR=0.473;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:87:99:87:0,1785 0/1:30,26:56:99:.:705,0,824:13,17,13,13 +chrX 1182193 . AAAAATAAAATAAAATAAAAT AAAAAT,AAAAATAAAAT,A 1338.97 . AC=2,0,1;AF=0.667,0.00,0.333;AN=3;AS_AltDP=28,12,6;AS_QD=24.32,31.18,33.91;DP=101;ExcessHet=0.0000;FS=0.000;MQ=59.19;QD=29.96;SOR=0.693;VarDP=46 GT:AD:DP:GQ:PL:SB 1:0,18,12,0:30:99:718,0,180,758:0,0,14,16 1/3:0,10,0,6:16:99:660,254,221,662,253,666,410,0,416,393:0,0,9,7 +chrX 1182273 . AATAAAAATAAAATAAAATAAAATAAG A 368.97 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=14.07;BaseQRankSum=1.583;DP=70;ExcessHet=0.0000;FS=3.645;MQ=59.20;MQRankSum=-1.208;QD=14.07;ReadPosRankSum=-0.586;SOR=0.223;VarDP=29 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:40:99:40:.:.:0,1146 0|1:18,11:29:99:.:0|1:1182273_AATAAAAATAAAATAAAATAAAATAAG_A:408,0,723:1182273:13,5,6,5 +chrX 1182275 . TA T,* 1477.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=36,0;AS_QD=33.23,0.00;BaseQRankSum=0.872;DP=72;ExcessHet=0.0000;FS=5.603;MQ=58.76;MQRankSum=-0.429;QD=39.92;ReadPosRankSum=0.523;SOR=0.259;VarDP=38 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:2,36,0:38:99:.:.:1517,0,1571:.:2,0,22,14 0|2:18,0,11:29:99:0|1:1182273_AATAAAAATAAAATAAAATAAAATAAG_A:408,462,1218,0,756,723:1182273:13,5,6,5 +chrX 1182284 . AATAAAATAAAATAAG A,* 194.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=18,0;AS_QD=7.55,0.00;BaseQRankSum=-1.345;DP=70;ExcessHet=0.0000;FS=7.343;MQ=58.79;MQRankSum=-0.195;QD=7.55;ReadPosRankSum=1.422;SOR=0.195;VarDP=31 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:13,18,0:31:99:.:.:234,0,765:.:9,4,9,9 0|2:18,0,11:29:99:0|1:1182273_AATAAAAATAAAATAAAATAAAATAAG_A:408,462,1218,0,756,723:1182273:13,5,6,5 +chrX 1182316 . TAAAATAAATAAAATA T 452.97 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=13.67;BaseQRankSum=1.664;DP=76;ExcessHet=0.0000;FS=5.630;MQ=59.35;MQRankSum=-1.197;QD=13.67;ReadPosRankSum=-1.371;SOR=0.169;VarDP=36 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:39:99:39:.:.:0,982 0|1:22,14:36:99:.:0|1:1182273_AATAAAAATAAAATAAAATAAAATAAG_A:492,0,857:1182273:17,5,8,6 +chrX 1182321 . TAAATAAAATA T,* 1286.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=37,0;AS_QD=34.00,0.00;BaseQRankSum=0.734;DP=80;ExcessHet=0.0000;FS=9.235;MQ=58.99;MQRankSum=-0.344;QD=34.00;ReadPosRankSum=0.127;SOR=0.164;VarDP=39 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:2,37,0:39:99:.:.:1326,0,1406:.:2,0,22,15 0|2:22,0,14:36:99:0|1:1182273_AATAAAAATAAAATAAAATAAAATAAG_A:492,558,1458,0,900,857:1182273:17,5,8,6 +chrX 1182569 . C G 1775 . AC=1;AF=0.333;AN=3;AS_AltDP=56;AS_QD=31.67;BaseQRankSum=-0.384;DP=123;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=31.67;ReadPosRankSum=-0.03;SOR=0.362;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,56:57:99:.:1805,0:0,1,24,32 0/0:.:62:46:62:0,46,1047 +chrX 1182844 . T C 3276 . AC=3;AF=1.00;AN=3;AS_AltDP=104;AS_QD=31.79;DP=110;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.79;SOR=0.813;VarDP=104 GT:AD:DP:GQ:PL:SB 1:0,52:52:99:1665,0:0,0,26,26 1/1:0,52:52:99:1641,156,0:0,0,23,29 +chrX 1182919 . CAAA C,CAAAAA 1383.97 . AC=0,2;AF=0.00,0.667;AN=3;AS_AltDP=14,49;AS_QD=4.59,20.62;BaseQRankSum=-1.162;DP=107;ExcessHet=0.0000;FS=0.000;MQ=59.81;MQRankSum=-1.301;QD=17.14;ReadPosRankSum=-0.731;SOR=0.724;VarDP=83 GT:AD:DP:GQ:PL:SB 2:0,14,26:40:99:812,656,0:0,0,19,21 0/2:20,0,23:43:99:611,671,1302,0,631,561:10,10,13,10 +chrX 1182991 . G C 3944 . AC=2;AF=0.667;AN=3;AS_AltDP=95;AS_QD=30.69;BaseQRankSum=-0.029;DP=110;ExcessHet=0.0000;FS=1.169;MQ=60.00;MQRankSum=0;QD=36.80;ReadPosRankSum=-1.089;SOR=1.046;VarDP=108 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,55:55:99:.:.:2409,0:.:0,0,34,21 0|1:13,40:53:99:0|1:1182991_G_C:1565,0,416:1182991:7,6,24,16 +chrX 1183011 . C T 3102 . AC=2;AF=0.667;AN=3;AS_AltDP=76;AS_QD=34.42;BaseQRankSum=-1.085;DP=118;ExcessHet=0.0000;FS=1.090;MQ=59.98;MQRankSum=0;QD=34.42;ReadPosRankSum=0.533;SOR=0.471;VarDP=91 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,36:36:99:.:.:1549,0:.:0,0,19,17 0|1:15,40:55:99:0|1:1182991_G_C:1583,0,479:1182991:9,6,21,19 +chrX 1183078 . A G 3736 . AC=3;AF=1.00;AN=3;AS_AltDP=119;AS_QD=31.65;DP=124;ExcessHet=0.0000;FS=0.000;MQ=59.60;QD=31.65;SOR=0.710;VarDP=119 GT:AD:DP:GQ:PL:SB 1:0,62:62:99:1955,0:0,0,30,32 1/1:0,57:57:99:1811,171,0:0,0,30,27 +chrX 1183138 . C T 158 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=3.19;BaseQRankSum=-0.531;DP=99;ExcessHet=0.0000;FS=0.000;MQ=59.81;MQRankSum=0.17;QD=3.19;ReadPosRankSum=1.199;SOR=0.601;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 1:26,33:59:99:.:188,0:8,18,11,22 0/0:.:42:21:39:0,21,1125 +chrX 1183238 . C T 108 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=2.30;BaseQRankSum=-2.512;DP=104;ExcessHet=0.0000;FS=3.582;MQ=60.00;MQRankSum=0;QD=2.30;ReadPosRankSum=0.55;SOR=0.350;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 1:27,33:60:99:.:138,0:10,17,16,17 0/0:.:42:21:39:0,21,1125 +chrX 1183574 . A G 657 . AC=3;AF=1.00;AN=3;AS_AltDP=21;AS_QD=32.71;DP=22;ExcessHet=0.0000;FS=0.000;MQ=39.16;QD=32.71;SOR=6.184;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,14:14:99:464,0:0,0,0,14 1/1:0,7:7:21:223,21,0:0,0,0,7 +chrX 1184482 . G GT 480.97 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=13.00;BaseQRankSum=-0.57;DP=52;ExcessHet=0.0000;FS=5.014;MQ=59.36;MQRankSum=-0.681;QD=13.00;ReadPosRankSum=-0.227;SOR=0.188;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:5:30:4:0,30 0/1:14,26:40:99:.:520,0,242:10,4,13,13 +chrX 1184528 . G A 3923 . AC=3;AF=1.00;AN=3;AS_AltDP=113;AS_QD=34.68;BaseQRankSum=3.038;DP=117;ExcessHet=0.0000;FS=0.000;MQ=59.25;MQRankSum=3.915;QD=34.68;ReadPosRankSum=1.02;SOR=0.260;VarDP=114 GT:AD:DP:GQ:PL:SB 1:0,63:63:99:2290,0:0,0,38,25 1/1:1,50:51:99:1663,143,0:1,0,21,29 +chrX 1184789 . C CT 1072.97 . AC=3;AF=1.00;AN=3;AS_AltDP=50;AS_QD=22.24;DP=81;ExcessHet=0.0000;FS=0.000;MQ=58.30;QD=22.24;SOR=1.051;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:678,0:0,0,15,15 1/1:0,20:20:59:434,59,0:0,0,14,6 +chrX 1185095 . C CT,CTTTT,CTT 1421.97 . AC=0,1,2;AF=0.00,0.333,0.667;AN=3;AS_AltDP=5,20,28;AS_QD=32.99,23.83,26.93;DP=94;ExcessHet=0.0000;FS=0.000;MQ=53.24;QD=27.57;SOR=1.402;VarDP=53 GT:AD:DP:GQ:PL:SB 2:0,5,20,0:25:99:707,298,0,570:0,0,16,9 3/3:0,0,0,28:28:84:754,754,755,754,755,755,84,84,84,0:0,0,18,10 +chrX 1185137 . C T 3356 . AC=3;AF=1.00;AN=3;AS_AltDP=76;AS_QD=31.05;DP=78;ExcessHet=0.0000;FS=0.000;MQ=57.70;QD=44.55;SOR=0.859;VarDP=76 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,37:37:99:.:.:1643,0:.:0,0,15,22 1|1:0,39:39:99:0|1:1185137_C_T:1743,117,0:1185137:0,0,20,19 +chrX 1185138 . A G 3356 . AC=3;AF=1.00;AN=3;AS_AltDP=76;AS_QD=27.09;DP=77;ExcessHet=0.0000;FS=0.000;MQ=57.67;QD=44.55;SOR=0.859;VarDP=76 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,37:37:99:.:.:1643,0:.:0,0,15,22 1|1:0,39:39:99:0|1:1185137_C_T:1743,117,0:1185137:0,0,20,19 +chrX 1185301 . G A 623 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=10.05;BaseQRankSum=2.092;DP=128;ExcessHet=0.0000;FS=2.115;MQ=60.00;MQRankSum=0;QD=10.05;ReadPosRankSum=0.115;SOR=1.011;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:89:61:0,89 0/1:40,25:65:99:.:653,0,1115:21,19,15,10 +chrX 1185634 . A G 3886 . AC=3;AF=1.00;AN=3;AS_AltDP=120;AS_QD=32.63;DP=123;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.63;SOR=0.950;VarDP=120 GT:AD:DP:GQ:PL:SB 1:0,58:58:99:1861,0:0,0,30,28 1/1:0,62:62:99:2055,186,0:0,0,23,39 +chrX 1185875 . G A 272 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=7.95;BaseQRankSum=0;DP=100;ExcessHet=0.0000;FS=1.616;MQ=60.00;MQRankSum=0;QD=7.95;ReadPosRankSum=-0.943;SOR=1.148;VarDP=38 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,535 0/1:26,12:38:99:.:302,0,787:19,7,10,2 +chrX 1186113 . A T 4883 . AC=3;AF=1.00;AN=3;AS_AltDP=117;AS_QD=31.80;DP=120;ExcessHet=0.0000;FS=0.000;MQ=57.95;QD=41.99;SOR=1.159;VarDP=117 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,62:62:99:.:.:2628,0:.:0,0,22,40 1|1:0,55:55:99:0|1:1186113_A_T:2285,165,0:1186113:0,0,25,30 +chrX 1186138 . T C 4804 . AC=3;AF=1.00;AN=3;AS_AltDP=114;AS_QD=30.86;DP=119;ExcessHet=0.0000;FS=0.000;MQ=58.09;QD=42.40;SOR=1.101;VarDP=114 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,60:60:99:.:.:2596,0:.:0,0,21,39 1|1:0,54:54:99:0|1:1186113_A_T:2238,162,0:1186113:0,0,26,28 +chrX 1186589 . G A 367 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=7.63;BaseQRankSum=2.848;DP=106;ExcessHet=0.0000;FS=13.167;MQ=59.91;MQRankSum=-0.784;QD=7.63;ReadPosRankSum=-0.606;SOR=1.485;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 1:21,31:52:99:.:397,0:13,8,10,21 0/0:.:53:49:53:0,49,1041 +chrX 1186909 . C T 129 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=2.74;BaseQRankSum=0.069;DP=113;ExcessHet=0.0000;FS=10.454;MQ=60.00;MQRankSum=0;QD=2.74;ReadPosRankSum=-0.694;SOR=2.064;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 1:27,31:58:99:.:159,0:11,16,6,25 0/0:.:53:49:53:0,49,1041 +chrX 1187334 . T C 1762 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=32.58;DP=115;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.58;SOR=0.970;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:89:56:0,89 1/1:0,55:55:99:.:1792,165,0:0,0,31,24 +chrX 1187391 . ATT A,AT 1310.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=49,20;AS_QD=20.00,16.80;BaseQRankSum=-0.755;DP=108;ExcessHet=0.0000;FS=12.631;MQ=59.96;MQRankSum=0;QD=18.24;ReadPosRankSum=0.726;SOR=0.192;VarDP=74 GT:AD:DP:GQ:PL:SB 2:2,11,20:33:99:420,270,0:2,0,15,16 1/1:3,38,0:41:43:930,43,0,939,112,1008:3,0,18,20 +chrX 1187538 . T C 3574 . AC=3;AF=1.00;AN=3;AS_AltDP=111;AS_QD=32.47;DP=114;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.47;SOR=1.241;VarDP=111 GT:AD:DP:GQ:PL:SB 1:0,53:53:99:1780,0:0,0,33,20 1/1:0,58:58:99:1824,173,0:0,0,35,23 +chrX 1187837 . C T 362 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=7.26;BaseQRankSum=0.451;DP=114;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=7.26;ReadPosRankSum=0.364;SOR=0.657;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 1:21,33:54:99:.:392,0:8,13,13,20 0/0:.:57:71:57:0,71,1201 +chrX 1187949 . AAAG A 355.97 . AC=1;AF=0.500;AN=2;AS_AltDP=18;AS_QD=10.39;BaseQRankSum=1.11;DP=95;ExcessHet=0.0000;FS=12.329;MQ=60.00;MQRankSum=0;QD=10.39;ReadPosRankSum=-0.41;SOR=1.779;VarDP=38 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB .:.:47:1:47:.:.:0,1 0|1:20,18:38:99:.:0|1:1187949_AAAG_A:395,0,453:1187949:8,12,13,5 +chrX 1187950 . A G,* 3405 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=41,39;AS_QD=26.64,0.00;DP=94;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=42.94;SOR=1.096;VarDP=80 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,21,21:42:1:.:.:1466,0,1:.:0,0,26,16 1|2:0,20,18:38:99:1|0:1187949_AAAG_A:1969,535,395,592,0,453:1187949:0,0,21,17 +chrX 1187953 . AG A 413.97 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=11.92;BaseQRankSum=-1.142;DP=92;ExcessHet=0.0000;FS=12.329;MQ=60.00;MQRankSum=0;QD=11.92;ReadPosRankSum=0.638;SOR=0.820;VarDP=38 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:46:30:44:.:.:0,30 0|1:18,20:38:99:.:1|0:1187949_AAAG_A:453,0,395:1187949:13,5,8,12 +chrX 1187956 . GA G 388.97 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=11.57;BaseQRankSum=-1.142;DP=94;ExcessHet=0.0000;FS=10.037;MQ=60.00;MQRankSum=0;QD=11.57;ReadPosRankSum=0.669;SOR=0.674;VarDP=37 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:46:30:44:.:.:0,30 0|1:18,19:37:99:.:1|0:1187949_AAAG_A:428,0,398:1187949:13,5,8,11 +chrX 1187957 . A AAG,* 3461.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=64,19;AS_QD=32.84,0.00;DP=96;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=42.18;SOR=0.997;VarDP=83 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,46,0:46:99:.:.:1525,0,1060:.:0,0,12,9 1|2:0,18,19:37:99:0|1:1187949_AAAG_A:1976,568,428,538,0,398:1187949:0,0,21,16 +chrX 1188057 . C T 473 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=12.27;BaseQRankSum=2.553;DP=97;ExcessHet=0.0000;FS=2.837;MQ=60.00;MQRankSum=0;QD=12.27;ReadPosRankSum=-0.381;SOR=1.230;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:55:99:55:0,189 0/1:23,18:41:99:.:503,0,591:14,9,13,5 +chrX 1188300 . C T 4017 . AC=3;AF=1.00;AN=3;AS_AltDP=122;AS_QD=32.90;BaseQRankSum=1.973;DP=127;ExcessHet=0.0000;FS=3.340;MQ=59.92;MQRankSum=-0.098;QD=32.90;ReadPosRankSum=0.931;SOR=0.490;VarDP=123 GT:AD:DP:GQ:PL:SB 1:0,69:69:99:2345,0:0,0,35,34 1/1:1,53:54:99:1702,137,0:1,0,21,32 +chrX 1188832 . T C 693 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=14.46;BaseQRankSum=-0.664;DP=117;ExcessHet=0.0000;FS=1.116;MQ=60.00;MQRankSum=0;QD=14.46;ReadPosRankSum=0.205;SOR=0.480;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,1311 0/1:22,28:50:99:.:723,0,575:14,8,16,12 +chrX 1188868 . TATATGTATATGCATTTGTATATGTATTTGC T 165.97 . AC=1;AF=0.333;AN=3;AS_AltDP=10;AS_QD=5.13;BaseQRankSum=0.219;DP=135;ExcessHet=0.0000;FS=1.363;MQ=59.64;MQRankSum=0;QD=5.13;ReadPosRankSum=0.818;SOR=0.473;VarDP=40 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:65:99:65:.:.:0,1311 0|1:30,10:40:99:.:0|1:1188868_TATATGTATATGCATTTGTATATGTATTTGC_T:205,0,1135:1188868:17,13,5,5 +chrX 1188880 . C *,T 1664 . AC=1,1;AF=0.500,0.500;AN=2;AS_AltDP=9,26;AS_QD=0.00,31.92;DP=108;ExcessHet=0.0000;FS=0.000;MQ=59.59;QD=48.40;SOR=1.148;VarDP=35 GT:AD:DP:GQ:MIN_DP:PL:SB .:.:48:0:48:0,0,0 1/2:0,9,26:35:99:.:1694,870,1055,344,0,272:0,0,21,14 +chrX 1188928 . T *,C 241 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=0,10;AS_QD=0.00,6.16;BaseQRankSum=0.416;DP=100;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=6.16;ReadPosRankSum=1.163;SOR=0.495;VarDP=44 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:49:99:49:.:.:0,680,680 0|2:34,0,10:44:99:.:0|1:1188868_TATATGTATATGCATTTGTATATGTATTTGC_T:271,321,1832,0,1324,1255:1188868:19,15,5,5 +chrX 1189097 . CTA C 530.97 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=15.83;BaseQRankSum=-1.179;DP=91;ExcessHet=0.0000;FS=3.345;MQ=59.02;MQRankSum=-1.851;QD=15.83;ReadPosRankSum=0.889;SOR=0.252;VarDP=36 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:49:11:49:0,11 0/1:19,17:36:99:.:570,0,630:4,15,6,11 +chrX 1189117 . CCATATATAGTGTG C 205.97 . AC=1;AF=0.333;AN=3;AS_AltDP=8;AS_QD=10.21;BaseQRankSum=1.405;DP=72;ExcessHet=0.0000;FS=11.020;MQ=56.83;MQRankSum=2.176;QD=10.21;ReadPosRankSum=-0.323;SOR=2.812;VarDP=24 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:40:35:34:.:.:0,35 0|1:16,8:24:99:.:0|1:1189117_CCATATATAGTGTG_C:245,0,590:1189117:9,7,1,7 +chrX 1189118 . C *,T 1491 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=8,15;AS_QD=0.00,26.96;DP=71;ExcessHet=0.0000;FS=0.000;MQ=57.49;QD=66.13;SOR=1.179;VarDP=23 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:40:35:34:.:.:0,35,35 1|2:0,8,15:23:99:.:1|0:1189117_CCATATATAGTGTG_C:1521,624,548,347,0,248:1189117:0,0,9,14 +chrX 1189130 . G *,A 1533 . AC=1,1;AF=0.500,0.500;AN=2;AS_AltDP=8,16;AS_QD=0.00,33.23;DP=71;ExcessHet=0.0000;FS=0.000;MQ=56.83;QD=65.13;SOR=1.051;VarDP=24 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB .:.:33:0:33:.:.:0,0,0 1|2:0,8,16:24:99:.:1|0:1189117_CCATATATAGTGTG_C:1563,666,590,347,0,245:1189117:0,0,10,14 +chrX 1189138 . AGTGT AGTGTGT,A 1485.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=31,8;AS_QD=29.11,25.67;BaseQRankSum=1.976;DP=64;ExcessHet=0.0000;FS=10.057;MQ=56.63;MQRankSum=-2.214;QD=29.33;ReadPosRankSum=-0.738;SOR=0.097;VarDP=52 GT:AD:DP:GQ:PL:SB 1:13,15,0:28:90:90,0,675:2,11,7,8 1/2:0,16,8:24:99:1435,334,244,655,0,591:0,0,10,14 +chrX 1189160 . G GTA 781.97 . AC=2;AF=0.667;AN=3;AS_AltDP=29;AS_QD=17.85;BaseQRankSum=-0.552;DP=51;ExcessHet=0.0000;FS=28.081;MQ=55.31;MQRankSum=-2.048;QD=17.85;ReadPosRankSum=2.103;SOR=0.141;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:9,15:24:99:.:.:270,0:.:0,9,7,8 0|1:8,14:22:99:1|0:1189117_CCATATATAGTGTG_C:551,0,248:1189117:1,7,8,6 +chrX 1189162 . G A 756 . AC=2;AF=0.667;AN=3;AS_AltDP=28;AS_QD=17.47;BaseQRankSum=0;DP=49;ExcessHet=0.0000;FS=25.403;MQ=55.35;MQRankSum=-1.895;QD=17.47;ReadPosRankSum=2.513;SOR=0.014;VarDP=45 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:9,15:24:99:.:.:270,0:.:0,9,7,8 0|1:8,13:21:99:1|0:1189117_CCATATATAGTGTG_C:516,0,250:1189117:1,7,7,6 +chrX 1189179 . GTA G 854.97 . AC=2;AF=0.667;AN=3;AS_AltDP=28;AS_QD=23.53;BaseQRankSum=-0.32;DP=40;ExcessHet=0.0000;FS=27.173;MQ=53.79;MQRankSum=-1.099;QD=23.53;ReadPosRankSum=0.933;SOR=0.541;VarDP=38 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:7,14:21:99:.:.:315,0:.:0,7,8,6 0|1:3,14:17:84:1|0:1189117_CCATATATAGTGTG_C:579,0,84:1189117:0,3,8,6 +chrX 1189206 . A AGTGTGTGTG 1085.97 . AC=2;AF=0.667;AN=3;AS_AltDP=26;AS_QD=29.18;DP=32;ExcessHet=0.0000;FS=3.900;MQ=52.35;MQRankSum=-0.657;QD=41.67;SOR=0.970;VarDP=27 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,12:12:99:.:.:540,0:.:0,0,8,4 0|1:1,14:15:0:1|0:1189117_CCATATATAGTGTG_C:585,0,0:1189117:0,1,8,6 +chrX 1189207 . TA *,T 1130.97 . AC=0,3;AF=0.00,1.00;AN=3;AS_AltDP=4,26;AS_QD=0.00,31.92;DP=31;ExcessHet=0.0000;FS=0.000;MQ=52.09;QD=39.00;SOR=0.826;VarDP=30 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 2:0,4,12:16:99:.:.:540,360,0:.:0,0,8,8 2|2:0,0,14:14:42:1|0:1189117_CCATATATAGTGTG_C:630,630,630,42,42,0:1189117:0,0,8,6 +chrX 1189231 . AG A 1306.97 . AC=3;AF=1.00;AN=3;AS_AltDP=33;AS_QD=26.12;BaseQRankSum=-0.23;DP=41;ExcessHet=0.0000;FS=2.108;MQ=56.65;MQRankSum=-0.561;QD=35.42;ReadPosRankSum=1.937;SOR=1.508;VarDP=38 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:3,18:21:99:.:.:701,0:.:1,2,13,5 1|1:2,15:17:38:1|0:1189117_CCATATATAGTGTG_C:645,38,0:1189117:2,0,11,4 +chrX 1189233 . T TATATATATATATA 1261.97 . AC=3;AF=1.00;AN=3;AS_AltDP=32;AS_QD=29.16;BaseQRankSum=0.425;DP=40;ExcessHet=0.0000;FS=2.057;MQ=57.00;MQRankSum=-0.414;QD=35.16;ReadPosRankSum=1.116;SOR=1.445;VarDP=37 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:3,18:21:99:.:.:701,0:.:1,2,13,5 1|1:2,14:16:35:1|0:1189117_CCATATATAGTGTG_C:600,35,0:1189117:2,0,10,4 +chrX 1189258 . G A 1596 . AC=3;AF=1.00;AN=3;AS_AltDP=45;AS_QD=32.52;BaseQRankSum=2.281;DP=55;ExcessHet=0.0000;FS=0.000;MQ=58.93;MQRankSum=0;QD=32.52;ReadPosRankSum=0.063;SOR=1.012;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:3,27:30:99:.:.:921,0:.:1,2,17,10 1|1:2,18:20:47:1|0:1189117_CCATATATAGTGTG_C:705,47,0:1189117:2,0,12,6 +chrX 1189464 . G A 876 . AC=2;AF=0.667;AN=3;AS_AltDP=50;AS_QD=10.30;BaseQRankSum=0.121;DP=92;ExcessHet=0.0000;FS=4.088;MQ=59.93;MQRankSum=0;QD=10.30;ReadPosRankSum=0.209;SOR=0.985;VarDP=88 GT:AD:DP:GQ:PL:SB 1:15,23:38:99:228,0:10,5,9,14 0/1:23,27:50:99:678,0,550:10,13,12,15 +chrX 1189532 . A G 2109 . AC=3;AF=1.00;AN=3;AS_AltDP=65;AS_QD=32.41;BaseQRankSum=2.299;DP=76;ExcessHet=0.0000;FS=3.282;MQ=59.57;MQRankSum=0;QD=32.41;ReadPosRankSum=-1.517;SOR=0.469;VarDP=66 GT:AD:DP:GQ:PL:SB 1:1,31:32:99:998,0:0,1,18,13 1/1:0,34:34:99:1141,102,0:0,0,17,17 +chrX 1189553 . G GA 340.97 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=11.18;BaseQRankSum=-1.459;DP=104;ExcessHet=0.0000;FS=1.317;MQ=59.77;MQRankSum=-0.884;QD=11.18;ReadPosRankSum=1.916;SOR=0.473;VarDP=34 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,855 0/1:16,18:34:99:.:380,0,353:10,6,10,8 +chrX 1189699 . C A,G 607 . AC=2,0;AF=0.667,0.00;AN=3;AS_AltDP=52,2;AS_QD=5.84,0.00;BaseQRankSum=1.474;DP=117;ExcessHet=0.0000;FS=1.520;MQ=59.83;MQRankSum=0;QD=5.74;ReadPosRankSum=0.272;SOR=0.542;VarDP=111 GT:AD:DP:GQ:PL:SB 1:28,30,0:58:80:80,0,922:17,11,15,15 0/1:29,22,2:53:99:557,0,705,658,804,2092:16,13,14,10 +chrX 1190058 . G A 1057 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=11.32;BaseQRankSum=1.415;DP=103;ExcessHet=0.0000;FS=1.667;MQ=59.10;MQRankSum=0.245;QD=11.32;ReadPosRankSum=-1.143;SOR=0.931;VarDP=96 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:26,30:56:99:.:.:201,0:.:14,12,16,14 0|1:16,24:40:99:0|1:1190058_G_A:886,0,589:1190058:7,9,14,10 +chrX 1190060 . T C 3738 . AC=3;AF=1.00;AN=3;AS_AltDP=93;AS_QD=27.87;BaseQRankSum=-0.781;DP=100;ExcessHet=0.0000;FS=3.297;MQ=59.08;MQRankSum=-0.192;QD=40.09;ReadPosRankSum=-1.369;SOR=0.466;VarDP=94 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,55:55:99:.:.:2147,0:.:0,0,29,26 1|1:1,38:39:72:0|1:1190058_G_A:1621,72,0:1190058:0,1,21,17 +chrX 1190077 . G A 483 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=13.15;BaseQRankSum=-2.618;DP=94;ExcessHet=0.0000;FS=1.252;MQ=59.65;MQRankSum=-0.421;QD=13.15;ReadPosRankSum=2.489;SOR=0.495;VarDP=39 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:54:99:54:.:.:0,319 0|1:25,14:39:99:.:1|0:1190058_G_A:513,0,997:1190058:14,11,7,7 +chrX 1190092 . C T 471 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=11.65;BaseQRankSum=-0.508;DP=101;ExcessHet=0.0000;FS=0.000;MQ=59.70;MQRankSum=-0.533;QD=11.65;ReadPosRankSum=2.697;SOR=0.518;VarDP=43 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:54:99:54:.:.:0,319 0|1:29,14:43:99:.:1|0:1190058_G_A:501,0,1104:1190058:16,13,7,7 +chrX 1190358 . G A 1801 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=33.29;DP=112;ExcessHet=0.0000;FS=0.000;MQ=59.67;QD=33.29;SOR=0.884;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:54:99:54:0,319 1/1:0,55:55:99:.:1831,165,0:0,0,30,25 +chrX 1190597 . C T 434 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=7.48;BaseQRankSum=3.012;DP=126;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=7.48;ReadPosRankSum=1.485;SOR=0.686;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 1:27,35:62:99:.:464,0:14,13,17,18 0/0:.:63:83:63:0,83,1487 +chrX 1190738 . C T 1067 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=17.98;BaseQRankSum=2.301;DP=129;ExcessHet=0.0000;FS=5.332;MQ=60.00;MQRankSum=0;QD=17.98;ReadPosRankSum=1.757;SOR=0.662;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,164 0/1:23,38:61:99:.:1097,0,536:9,14,21,17 +chrX 1190829 . G A 631 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=11.40;BaseQRankSum=2.545;DP=122;ExcessHet=0.0000;FS=5.476;MQ=60.00;MQRankSum=0;QD=11.40;ReadPosRankSum=1.785;SOR=1.519;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,164 0/1:34,24:58:99:.:661,0,895:17,17,8,16 +chrX 1190963 . G A 342 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=6.76;BaseQRankSum=0.971;DP=124;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=6.76;ReadPosRankSum=0.056;SOR=0.646;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,164 0/1:39,16:55:99:.:372,0,1056:19,20,8,8 +chrX 1191045 . G A 266 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=5.48;BaseQRankSum=1.219;DP=105;ExcessHet=0.0000;FS=1.059;MQ=60.00;MQRankSum=0;QD=5.48;ReadPosRankSum=-2.189;SOR=0.829;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 1:23,31:54:99:.:296,0:11,12,17,14 0/0:.:46:73:46:0,73,1330 +chrX 1191074 . T C 412 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=10.28;BaseQRankSum=0.352;DP=92;ExcessHet=0.0000;FS=4.566;MQ=60.00;MQRankSum=0;QD=10.28;ReadPosRankSum=1.205;SOR=1.306;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:49:31:49:0,31 0/1:26,17:43:99:.:442,0,733:12,14,11,6 +chrX 1191089 . G A 469 . AC=2;AF=0.667;AN=3;AS_AltDP=45;AS_QD=5.14;BaseQRankSum=1.041;DP=100;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=5.14;ReadPosRankSum=0.884;SOR=0.773;VarDP=97 GT:AD:DP:GQ:PL:SB 1:26,27:53:15:15,0:16,10,14,13 0/1:26,18:44:99:484,0,711:13,13,12,6 +chrX 1191295 . C CTCTTTCTT,CTCTTTCTTTCCTTCTT,CTCTT,CTCTTTCTTTCCT 1084.97 . AC=0,1,1,1;AF=0.00,0.333,0.333,0.333;AN=3;AS_AltDP=0,24,7,24;AS_QD=0.00,6.73,9.30,19.84;BaseQRankSum=2.559;DP=109;ExcessHet=0.0000;FS=0.000;MQ=59.24;MQRankSum=2.73;QD=16.53;ReadPosRankSum=-0.567;SOR=0.693;VarDP=68 GT:AD:DP:GQ:PL:SB 2:10,0,24,0,0:34:99:249,613,0,802,802:2,8,7,17 3/4:3,0,0,7,24:34:99:875,933,1197,933,1197,1197,689,808,808,762,141,439,439,0,549:2,1,11,20 +chrX 1191656 . T C 3516 . AC=3;AF=1.00;AN=3;AS_AltDP=112;AS_QD=31.66;DP=116;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.66;SOR=1.015;VarDP=112 GT:AD:DP:GQ:PL:SB 1:0,57:57:99:1779,0:0,0,37,20 1/1:0,55:55:99:1767,165,0:0,0,27,28 +chrX 1191803 . C T 2919 . AC=2;AF=0.667;AN=3;AS_AltDP=75;AS_QD=30.40;BaseQRankSum=-0.989;DP=102;ExcessHet=0.0000;FS=3.319;MQ=59.95;MQRankSum=0;QD=30.40;ReadPosRankSum=2.203;SOR=0.351;VarDP=97 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,51:51:99:.:.:2028,0:.:0,0,24,27 0|1:22,24:46:99:0|1:1191803_C_T:921,0,830:1191803:8,14,12,12 +chrX 1191810 . T C 1265 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=13.92;BaseQRankSum=-0.539;DP=95;ExcessHet=0.0000;FS=1.706;MQ=59.95;MQRankSum=0;QD=13.92;ReadPosRankSum=1.686;SOR=0.512;VarDP=93 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:18,30:48:99:.:.:371,0:.:9,9,13,17 0|1:21,24:45:99:0|1:1191803_C_T:924,0,799:1191803:7,14,12,12 +chrX 1191971 . C T 876 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=21.07;BaseQRankSum=0.756;DP=104;ExcessHet=0.0000;FS=14.774;MQ=57.59;MQRankSum=-2.406;QD=21.07;ReadPosRankSum=1.657;SOR=1.959;VarDP=43 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:59:99:59:.:.:0,218 0|1:20,23:43:99:.:0|1:1191971_C_T:906,0,759:1191971:12,8,6,17 +chrX 1191972 . A G 3245 . AC=2;AF=0.667;AN=3;AS_AltDP=76;AS_QD=34.11;BaseQRankSum=-0.098;DP=100;ExcessHet=0.0000;FS=11.143;MQ=56.27;MQRankSum=-2.406;QD=34.11;ReadPosRankSum=1.315;SOR=1.204;VarDP=96 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,53:53:99:.:.:2369,0:.:0,0,22,31 0|1:20,23:43:99:0|1:1191971_C_T:906,0,759:1191971:12,8,6,17 +chrX 1191974 . G A 3214 . AC=2;AF=0.667;AN=3;AS_AltDP=75;AS_QD=34.51;BaseQRankSum=-0.093;DP=95;ExcessHet=0.0000;FS=9.094;MQ=56.06;MQRankSum=-2.347;QD=34.51;ReadPosRankSum=1.197;SOR=1.195;VarDP=94 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,52:52:99:.:.:2335,0:.:0,0,22,30 0|1:19,23:42:99:0|1:1191971_C_T:909,0,729:1191971:11,8,6,17 +chrX 1191976 . T C 3265 . AC=2;AF=0.667;AN=3;AS_AltDP=76;AS_QD=28.79;BaseQRankSum=-0.306;DP=95;ExcessHet=0.0000;FS=9.543;MQ=55.96;MQRankSum=-2.342;QD=35.05;ReadPosRankSum=1.007;SOR=1.100;VarDP=94 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,54:54:99:.:.:2425,0:.:0,0,24,30 0|1:18,22:40:99:0|1:1191971_C_T:870,0,690:1191971:11,7,5,17 +chrX 1191980 . T C 3045 . AC=2;AF=0.667;AN=3;AS_AltDP=71;AS_QD=34.55;BaseQRankSum=-0.262;DP=90;ExcessHet=0.0000;FS=7.348;MQ=55.72;MQRankSum=-2.342;QD=34.55;ReadPosRankSum=0.68;SOR=0.916;VarDP=89 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,49:49:99:.:.:2205,0:.:0,0,24,25 0|1:18,22:40:99:0|1:1191971_C_T:870,0,690:1191971:11,7,5,17 +chrX 1191987 . T C 3000 . AC=2;AF=0.667;AN=3;AS_AltDP=70;AS_QD=34.83;BaseQRankSum=-0.085;DP=88;ExcessHet=0.0000;FS=5.466;MQ=55.38;MQRankSum=-2.438;QD=34.83;ReadPosRankSum=-0.241;SOR=0.823;VarDP=87 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,47:47:99:.:.:2115,0:.:0,0,25,22 0|1:17,23:40:99:0|1:1191971_C_T:915,0,645:1191971:10,7,5,18 +chrX 1191988 . G A 2993 . AC=2;AF=0.667;AN=3;AS_AltDP=70;AS_QD=34.75;BaseQRankSum=0.807;DP=88;ExcessHet=0.0000;FS=5.466;MQ=55.20;MQRankSum=-2.498;QD=34.75;ReadPosRankSum=-0.34;SOR=0.823;VarDP=87 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,48:48:99:.:.:2150,0:.:0,0,26,22 0|1:17,22:39:99:0|1:1191971_C_T:873,0,648:1191971:10,7,4,18 +chrX 1191993 . G C 2948 . AC=2;AF=0.667;AN=3;AS_AltDP=69;AS_QD=34.63;BaseQRankSum=-0.195;DP=88;ExcessHet=0.0000;FS=5.542;MQ=55.20;MQRankSum=-2.498;QD=34.63;ReadPosRankSum=-0.794;SOR=0.874;VarDP=86 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,47:47:99:.:.:2105,0:.:0,0,25,22 0|1:17,22:39:99:0|1:1191971_C_T:873,0,648:1191971:10,7,4,18 +chrX 1192021 . T C 1849 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=23.20;BaseQRankSum=-0.38;DP=84;ExcessHet=0.0000;FS=1.001;MQ=54.54;MQRankSum=-3.679;QD=23.20;ReadPosRankSum=-1.931;SOR=0.747;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,44:44:99:1404,0:0,0,25,19 0/1:19,18:37:99:475,0,504:10,9,4,14 +chrX 1192068 . G A 313 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=10.09;BaseQRankSum=2.319;DP=73;ExcessHet=0.0000;FS=3.176;MQ=52.52;MQRankSum=-4.96;QD=10.09;ReadPosRankSum=0.691;SOR=1.044;VarDP=34 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:39:45:36:0,45 0/1:21,13:34:99:.:343,0,543:12,9,5,8 +chrX 1192097 . T C 330 . AC=2;AF=0.667;AN=3;AS_AltDP=29;AS_QD=5.90;BaseQRankSum=1.473;DP=67;ExcessHet=0.0000;FS=0.000;MQ=50.67;MQRankSum=-2.031;QD=5.90;ReadPosRankSum=1.662;SOR=0.772;VarDP=61 GT:AD:DP:GQ:PL:SB 1:16,19:35:97:97,0:9,7,10,9 0/1:16,10:26:99:263,0,433:8,8,6,4 +chrX 1192160 . C G 563 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=19.77;BaseQRankSum=-2.661;DP=68;ExcessHet=0.0000;FS=0.000;MQ=50.74;MQRankSum=-2.766;QD=19.77;ReadPosRankSum=-0.286;SOR=0.483;VarDP=30 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:38:99:38:.:.:0,585 0|1:13,17:30:99:.:0|1:1192160_C_G:593,0,474:1192160:10,3,12,5 +chrX 1192184 . G A 518 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=17.13;BaseQRankSum=1.347;DP=71;ExcessHet=0.0000;FS=4.170;MQ=53.86;MQRankSum=-2.224;QD=17.13;ReadPosRankSum=1.039;SOR=0.184;VarDP=32 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:38:99:38:.:.:0,585 0|1:17,15:32:99:.:0|1:1192160_C_G:548,0,607:1192160:15,2,11,4 +chrX 1192220 . A C 695 . AC=1;AF=0.500;AN=2;AS_AltDP=22;AS_QD=15.10;BaseQRankSum=-2.23;DP=89;ExcessHet=0.0000;FS=1.242;MQ=58.06;MQRankSum=-0.324;QD=15.10;ReadPosRankSum=0.704;SOR=0.504;VarDP=48 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB .:.:40:0:40:.:.:0,0 0|1:26,22:48:99:.:0|1:1192220_A_C:725,0,895:1192220:20,6,16,6 +chrX 1192221 . C A,CA 1780 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=37,18;AS_QD=25.40,24.66;BaseQRankSum=-0.383;DP=94;ExcessHet=0.0000;FS=6.769;MQ=57.67;MQRankSum=-0.324;QD=22.35;ReadPosRankSum=0.756;SOR=0.217;VarDP=81 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 2:0,15,18:33:99:.:.:1085,210,0:.:0,0,17,16 0|1:26,22,0:48:99:0|1:1192220_A_C:725,0,895,803,961,1764:1192220:20,6,16,6 +chrX 1192564 . C A 802 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=12.80;BaseQRankSum=1.982;DP=128;ExcessHet=0.0000;FS=2.089;MQ=59.61;MQRankSum=-0.686;QD=12.80;ReadPosRankSum=-0.243;SOR=0.463;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,406 0/1:34,31:65:99:.:832,0,856:12,22,13,18 +chrX 1192708 . TTTTCTTTCTTTCTTTCTTTC T,TTTTCTTTCTTTCTTTCTTTCTTTCTTTC 1184.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=21,10;AS_QD=30.10,32.06;DP=118;ExcessHet=0.0000;FS=0.000;MQ=59.23;QD=39.48;SOR=1.402;VarDP=31 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,406,406 1/2:0,21,10:31:99:.:1224,418,689,805,0,777:0,0,11,20 +chrX 1192765 . T TTTCCTTCCTTCC 275.97 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=9.26;BaseQRankSum=-0.48;DP=105;ExcessHet=0.0000;FS=0.000;MQ=58.44;MQRankSum=-1.368;QD=9.26;ReadPosRankSum=-0.532;SOR=0.730;VarDP=34 GT:AD:DP:GQ:MIN_DP:PL:SB 1:13,21:34:99:.:315,0:5,8,8,13 0/0:.:60:45:60:0,45,1485 +chrX 1193297 . T C 2320 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=33.27;DP=118;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=41.96;SOR=1.009;VarDP=56 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:61:99:61:.:.:0,1018 1|1:0,56:56:99:.:0|1:1193297_T_C:2350,168,0:1193297:0,0,32,24 +chrX 1193322 . C T 4179 . AC=3;AF=1.00;AN=3;AS_AltDP=112;AS_QD=27.88;DP=113;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=37.58;SOR=1.109;VarDP=112 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,63:63:99:.:.:2090,0:.:0,0,39,24 1|1:0,49:49:99:0|1:1193297_T_C:2119,147,0:1193297:0,0,27,22 +chrX 1193650 . T C 1756 . AC=1;AF=0.333;AN=3;AS_AltDP=57;AS_QD=31.33;DP=97;ExcessHet=0.0000;FS=0.000;MQ=58.34;QD=31.33;SOR=0.800;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,57:57:99:.:1786,0:0,0,30,27 0/0:.:40:32:39:0,32,1092 +chrX 1193781 . CAA C,CAAA 986.97 . AC=1,2;AF=0.333,0.667;AN=3;AS_AltDP=21,23;AS_QD=25.57,17.52;BaseQRankSum=-0.354;DP=81;ExcessHet=0.0000;FS=0.000;MQ=58.14;MQRankSum=-0.335;QD=22.30;ReadPosRankSum=-1.578;SOR=0.990;VarDP=46 GT:AD:DP:GQ:PL:SB 1:2,21,0:23:99:588,0,627:1,1,12,9 2/2:0,0,23:23:68:438,439,439,68,68,0:0,0,13,10 +chrX 1193853 . C G,T 1523 . AC=0,2;AF=0.00,0.667;AN=3;AS_AltDP=2,48;AS_QD=10.00,32.35;DP=107;ExcessHet=0.0000;FS=0.000;MQ=59.57;QD=31.06;SOR=0.859;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:55:99:55:0,1046,1046 2/2:0,2,48:50:99:.:1553,1538,1533,143,129,0:0,0,27,23 +chrX 1193955 . C G 110 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=3.11;BaseQRankSum=-2.097;DP=101;ExcessHet=0.0000;FS=4.288;MQ=59.63;MQRankSum=0.225;QD=3.11;ReadPosRankSum=-1.771;SOR=0.850;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 1:19,26:45:99:.:140,0:8,11,15,11 0/0:.:54:90:54:0,90,1485 +chrX 1193956 . G A 1127 . AC=2;AF=0.667;AN=3;AS_AltDP=35;AS_QD=32.14;BaseQRankSum=2.677;DP=101;ExcessHet=0.0000;FS=3.802;MQ=58.63;MQRankSum=2.823;QD=32.14;ReadPosRankSum=-1.637;SOR=0.876;VarDP=36 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,1146 1/1:1,35:36:98:.:1157,98,0:1,0,14,21 +chrX 1194053 . G A 622 . AC=1;AF=0.333;AN=3;AS_AltDP=40;AS_QD=10.35;BaseQRankSum=1.283;DP=121;ExcessHet=0.0000;FS=0.988;MQ=59.24;MQRankSum=-1.537;QD=10.35;ReadPosRankSum=-1.464;SOR=0.724;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 1:23,40:63:99:.:652,0:12,11,19,21 0/0:.:58:69:58:0,69,1257 +chrX 1194153 . G C 1285 . AC=2;AF=0.667;AN=3;AS_AltDP=42;AS_QD=29.89;BaseQRankSum=2.855;DP=113;ExcessHet=0.0000;FS=0.000;MQ=59.71;MQRankSum=-0.322;QD=29.89;ReadPosRankSum=-0.028;SOR=0.892;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:99:66:0,171 1/1:2,42:44:99:.:1315,112,0:1,1,23,19 +chrX 1194226 . A G 5109 . AC=3;AF=1.00;AN=3;AS_AltDP=117;AS_QD=31.84;DP=125;ExcessHet=0.0000;FS=0.000;MQ=59.67;QD=43.92;SOR=0.710;VarDP=117 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,62:62:99:.:.:2710,0:.:0,0,28,34 1|1:0,55:55:99:0|1:1194226_A_G:2429,165,0:1194226:0,0,30,25 +chrX 1194239 . A G 5305 . AC=3;AF=1.00;AN=3;AS_AltDP=120;AS_QD=30.45;DP=128;ExcessHet=0.0000;FS=0.000;MQ=59.68;QD=44.46;SOR=0.726;VarDP=120 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,62:62:99:.:.:2771,0:.:0,0,26,36 1|1:0,58:58:99:0|1:1194226_A_G:2564,174,0:1194226:0,0,33,25 +chrX 1194251 . G C 5302 . AC=3;AF=1.00;AN=3;AS_AltDP=124;AS_QD=25.43;DP=132;ExcessHet=0.0000;FS=0.000;MQ=59.65;QD=43.00;SOR=0.759;VarDP=124 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,61:61:99:.:.:2660,0:.:0,0,25,36 1|1:0,63:63:99:0|1:1194226_A_G:2672,189,0:1194226:0,0,35,28 +chrX 1194331 . A G 4563 . AC=3;AF=1.00;AN=3;AS_AltDP=108;AS_QD=28.37;BaseQRankSum=-0.283;DP=116;ExcessHet=0.0000;FS=3.050;MQ=59.72;MQRankSum=0;QD=42.14;ReadPosRankSum=-1.58;SOR=0.282;VarDP=109 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,44:45:99:.:.:1849,0:.:0,1,19,25 1|1:0,64:64:99:0|1:1194331_A_G:2744,192,0:1194331:0,0,36,28 +chrX 1194351 . G A 4902 . AC=3;AF=1.00;AN=3;AS_AltDP=117;AS_QD=26.97;BaseQRankSum=-0.172;DP=127;ExcessHet=0.0000;FS=0.000;MQ=59.56;MQRankSum=0;QD=41.80;ReadPosRankSum=-0.289;SOR=0.259;VarDP=118 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,48:49:99:.:.:2013,0:.:0,1,17,31 1|1:0,69:69:99:0|1:1194331_A_G:2919,207,0:1194331:0,0,39,30 +chrX 1194440 . T C 5254 . AC=3;AF=1.00;AN=3;AS_AltDP=133;AS_QD=32.03;DP=137;ExcessHet=0.0000;FS=0.000;MQ=59.68;QD=39.73;SOR=1.179;VarDP=133 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,61:61:99:.:.:2216,0:.:0,0,25,36 1|1:0,72:72:99:0|1:1194440_T_C:3068,216,0:1194440:0,0,28,44 +chrX 1194448 . T C 2935 . AC=2;AF=0.667;AN=3;AS_AltDP=69;AS_QD=31.27;DP=127;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=42.97;SOR=1.211;VarDP=69 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:57:99:57:.:.:0,214 1|1:0,69:69:99:.:0|1:1194440_T_C:2965,207,0:1194440:0,0,27,42 +chrX 1194464 . A G 3912 . AC=3;AF=1.00;AN=3;AS_AltDP=120;AS_QD=32.85;DP=125;ExcessHet=0.0000;FS=0.000;MQ=59.84;QD=32.85;SOR=1.368;VarDP=120 GT:AD:DP:GQ:PL:SB 1:0,57:57:99:1846,0:0,0,26,31 1/1:0,63:63:99:2096,189,0:0,0,18,45 +chrX 1194501 . C T 1971 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=33.92;DP=116;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.92;SOR=2.342;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:55:56:0,55 1/1:0,59:59:99:.:2001,177,0:0,0,14,45 +chrX 1194528 . A G 3757 . AC=3;AF=1.00;AN=3;AS_AltDP=117;AS_QD=32.37;DP=120;ExcessHet=0.0000;FS=0.000;MQ=59.96;QD=32.37;SOR=1.159;VarDP=117 GT:AD:DP:GQ:PL:SB 1:0,63:63:99:2007,0:0,0,32,31 1/1:0,54:54:99:1780,162,0:0,0,15,39 +chrX 1194628 . G A 1607 . AC=2;AF=0.667;AN=3;AS_AltDP=49;AS_QD=33.41;DP=115;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.41;SOR=1.007;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,283 1/1:0,49:49:99:.:1637,147,0:0,0,28,21 +chrX 1194682 . A G 1801 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=32.12;DP=122;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.12;SOR=1.342;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,283 1/1:0,57:57:99:.:1831,170,0:0,0,36,21 +chrX 1194744 . A G 4167 . AC=3;AF=1.00;AN=3;AS_AltDP=133;AS_QD=31.56;DP=138;ExcessHet=0.0000;FS=0.000;MQ=59.84;QD=31.56;SOR=1.055;VarDP=133 GT:AD:DP:GQ:PL:SB 1:0,76:76:99:2402,0:0,0,42,34 1/1:0,57:57:99:1795,170,0:0,0,35,22 +chrX 1195067 . C G 913 . AC=2;AF=0.667;AN=3;AS_AltDP=28;AS_QD=33.68;DP=89;ExcessHet=0.0000;FS=0.000;MQ=59.77;QD=33.68;SOR=1.382;VarDP=28 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:57:70:57:0,70 1/1:0,28:28:84:.:943,84,0:0,0,18,10 +chrX 1195409 . T C 2141 . AC=3;AF=1.00;AN=3;AS_AltDP=92;AS_QD=18.56;BaseQRankSum=0.347;DP=122;ExcessHet=0.0000;FS=0.000;MQ=59.96;MQRankSum=0;QD=18.56;ReadPosRankSum=-0.491;SOR=0.748;VarDP=117 GT:AD:DP:GQ:PL:SB 1:24,33:57:99:306,0:12,12,17,16 1/1:1,59:60:99:1865,145,0:1,0,32,27 +chrX 1195454 . G C 4207 . AC=3;AF=1.00;AN=3;AS_AltDP=131;AS_QD=32.34;DP=135;ExcessHet=0.0000;FS=0.000;MQ=59.96;QD=32.34;SOR=0.838;VarDP=131 GT:AD:DP:GQ:PL:SB 1:0,72:72:99:2310,0:0,0,33,39 1/1:0,59:59:99:1927,177,0:0,0,28,31 +chrX 1195635 . T A 3863 . AC=3;AF=1.00;AN=3;AS_AltDP=121;AS_QD=32.17;DP=126;ExcessHet=0.0000;FS=0.000;MQ=59.90;QD=32.17;SOR=0.710;VarDP=121 GT:AD:DP:GQ:PL:SB 1:0,62:62:99:1993,0:0,0,35,27 1/1:0,59:59:99:1900,176,0:0,0,26,33 +chrX 1195721 . G C 1992 . AC=3;AF=1.00;AN=3;AS_AltDP=90;AS_QD=17.14;BaseQRankSum=1.363;DP=124;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=17.14;ReadPosRankSum=-1.401;SOR=0.781;VarDP=118 GT:AD:DP:GQ:PL:SB 1:28,30:58:99:129,0:13,15,18,12 1/1:0,60:60:99:1893,179,0:0,0,22,38 +chrX 1195817 . A ATATATAT 2424.97 . AC=2;AF=1.00;AN=2;AS_AltDP=55;AS_QD=36.46;DP=128;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.80;SOR=0.970;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB .:.:67:1:67:0,1 1/1:0,55:55:99:.:2464,165,0:0,0,31,24 +chrX 1195903 . G A 58 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=1.33;BaseQRankSum=-0.13;DP=126;ExcessHet=0.0000;FS=2.021;MQ=59.75;MQRankSum=0;QD=1.33;ReadPosRankSum=-0.919;SOR=0.473;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 1:31,35:66:88:.:88,0:18,13,18,17 0/0:.:56:99:56:0,100,1378 +chrX 1196036 . A G 3475 . AC=3;AF=1.00;AN=3;AS_AltDP=109;AS_QD=32.16;DP=116;ExcessHet=0.0000;FS=0.000;MQ=59.44;QD=32.16;SOR=0.956;VarDP=109 GT:AD:DP:GQ:PL:SB 1:0,61:61:99:1993,0:0,0,38,23 1/1:0,48:48:99:1512,144,0:0,0,23,25 +chrX 1196078 . T G 2514 . AC=3;AF=1.00;AN=3;AS_AltDP=81;AS_QD=24.46;BaseQRankSum=-1.069;DP=112;ExcessHet=0.0000;FS=1.934;MQ=58.65;MQRankSum=-0.534;QD=24.46;ReadPosRankSum=-0.336;SOR=0.957;VarDP=104 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:23,35:58:99:.:.:507,0:.:12,11,25,10 1|1:0,46:46:99:0|1:1196078_T_G:2037,138,0:1196078:0,0,22,24 +chrX 1196079 . T C 2514 . AC=3;AF=1.00;AN=3;AS_AltDP=81;AS_QD=24.46;BaseQRankSum=-1.178;DP=112;ExcessHet=0.0000;FS=1.934;MQ=58.65;MQRankSum=-0.534;QD=24.46;ReadPosRankSum=0.08;SOR=0.957;VarDP=104 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:23,35:58:99:.:.:507,0:.:12,11,25,10 1|1:0,46:46:99:0|1:1196078_T_G:2037,138,0:1196078:0,0,22,24 +chrX 1196187 . AT A 1121.97 . AC=3;AF=1.00;AN=3;AS_AltDP=56;AS_QD=19.03;BaseQRankSum=-0.483;DP=87;ExcessHet=0.0000;FS=25.840;MQ=59.42;MQRankSum=1.649;QD=19.03;ReadPosRankSum=-0.595;SOR=1.934;VarDP=61 GT:AD:DP:GQ:PL:SB 1:5,34:39:99:653,0:5,0,6,28 1/1:0,22:22:66:508,66,0:0,0,9,13 +chrX 1196218 . C T 138 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=3.57;BaseQRankSum=-1.06;DP=95;ExcessHet=0.0000;FS=8.613;MQ=59.66;MQRankSum=1.155;QD=3.57;ReadPosRankSum=-0.118;SOR=0.153;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 1:21,26:47:99:.:168,0:5,16,12,14 0/0:.:46:47:46:0,47,893 +chrX 1196542 . C T 3122 . AC=3;AF=1.00;AN=3;AS_AltDP=94;AS_QD=33.53;DP=98;ExcessHet=0.0000;FS=0.000;MQ=59.74;QD=33.53;SOR=0.924;VarDP=94 GT:AD:DP:GQ:PL:SB 1:0,49:49:99:1618,0:0,0,27,22 1/1:0,45:45:99:1534,135,0:0,0,25,20 +chrX 1196580 . C G 3170 . AC=3;AF=1.00;AN=3;AS_AltDP=100;AS_QD=32.00;DP=102;ExcessHet=0.0000;FS=0.000;MQ=59.95;QD=32.00;SOR=0.775;VarDP=100 GT:AD:DP:GQ:PL:SB 1:0,45:45:99:1489,0:0,0,20,25 1/1:0,55:55:99:1711,164,0:0,0,28,27 +chrX 1196617 . A G 3330 . AC=3;AF=1.00;AN=3;AS_AltDP=109;AS_QD=30.83;DP=114;ExcessHet=0.0000;FS=0.000;MQ=59.96;QD=30.83;SOR=0.912;VarDP=109 GT:AD:DP:GQ:PL:SB 1:0,57:57:99:1784,0:0,0,26,31 1/1:0,52:52:99:1576,154,0:0,0,23,29 +chrX 1196650 . G T 104 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=2.23;BaseQRankSum=-1.562;DP=114;ExcessHet=0.0000;FS=5.246;MQ=60.00;MQRankSum=0;QD=2.23;ReadPosRankSum=-1.999;SOR=1.068;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 1:27,33:60:99:.:134,0:15,12,13,20 0/0:.:53:77:53:0,77,1296 +chrX 1196921 . G A 414 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=9.06;BaseQRankSum=2.89;DP=113;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=9.06;ReadPosRankSum=0.914;SOR=0.681;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,1522 0/1:32,17:49:99:.:444,0,845:17,15,9,8 +chrX 1197217 . C T 240 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=6.28;BaseQRankSum=0.96;DP=91;ExcessHet=0.0000;FS=2.649;MQ=59.89;MQRankSum=1.226;QD=6.28;ReadPosRankSum=-0.16;SOR=0.803;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 1:18,25:43:99:.:270,0:10,8,11,14 0/0:.:53:35:48:0,35,1192 +chrX 1197611 . C T 2023 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=33.11;DP=126;ExcessHet=0.0000;FS=0.000;MQ=59.75;QD=33.11;SOR=0.693;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:99:60:0,154 1/1:0,62:62:99:.:2053,186,0:0,0,31,31 +chrX 1197767 . C T 1706 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=29.93;BaseQRankSum=1.269;DP=118;ExcessHet=0.0000;FS=0.000;MQ=59.97;MQRankSum=0;QD=29.93;ReadPosRankSum=-1.106;SOR=0.478;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:99:60:0,154 1/1:1,57:58:99:.:1736,149,0:0,1,22,35 +chrX 1198182 . TCCCAGGAAGGCAGGACACCC T 358.97 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=8.12;BaseQRankSum=-0.429;DP=113;ExcessHet=0.0000;FS=17.374;MQ=49.04;MQRankSum=3.663;QD=8.12;ReadPosRankSum=0.527;SOR=1.041;VarDP=49 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:60:99:60:.:.:0,154 0|1:31,18:49:99:.:0|1:1198182_TCCCAGGAAGGCAGGACACCC_T:398,0,881:1198182:12,2,5,9 +chrX 1198203 . TCCCTCCCACCTCGAAGGCAGGACACCCTCCCTCCCACCTC T 157.97 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=2.81;BaseQRankSum=0.56;DP=132;ExcessHet=0.0000;FS=1.163;MQ=47.28;MQRankSum=2.903;QD=2.81;ReadPosRankSum=-0.123;SOR=0.953;VarDP=70 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:60:99:60:.:.:0,154 0|1:56,14:70:99:.:0|1:1198182_TCCCAGGAAGGCAGGACACCC_T:197,0,1445:1198182:24,32,5,9 +chrX 1198352 . G GCCTCCCTCCCACCTCCCGGGAAGATAGGACAC 91.97 . AC=1;AF=0.333;AN=3;AS_AltDP=4;AS_QD=26.20;DP=107;ExcessHet=0.0000;FS=0.000;MQ=52.32;MQRankSum=0.524;QD=26.20;ReadPosRankSum=-1.282;SOR=1.981;VarDP=5 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:60:99:60:.:.:0,154 0|1:1,4:5:16:.:0|1:1198352_G_GCCTCCCTCCCACCTCCCGGGAAGATAGGACAC:131,0,16:1198352:1,0,4,0 +chrX 1198377 . TAGGACACCCTCCCTCCCACCTCGAAGGC T 83.97 . AC=1;AF=0.333;AN=3;AS_AltDP=7;AS_QD=3.84;BaseQRankSum=0.464;DP=135;ExcessHet=0.0000;FS=0.000;MQ=52.68;MQRankSum=1.678;QD=3.84;ReadPosRankSum=-1.451;SOR=0.315;VarDP=32 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:60:99:60:.:.:0,154 0|1:25,7:32:99:.:1|0:1198352_G_GCCTCCCTCCCACCTCCCGGGAAGATAGGACAC:123,0,615:1198352:22,3,6,1 +chrX 1198430 . A G 122 . AC=1;AF=0.333;AN=3;AS_AltDP=9;AS_QD=3.71;BaseQRankSum=0.73;DP=130;ExcessHet=0.0000;FS=4.157;MQ=52.22;MQRankSum=1.845;QD=3.71;ReadPosRankSum=-1.024;SOR=0.187;VarDP=41 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:60:99:60:.:.:0,154 0|1:32,9:41:99:.:1|0:1198352_G_GCCTCCCTCCCACCTCCCGGGAAGATAGGACAC:152,0,780:1198352:26,6,6,3 +chrX 1198436 . G A 149 . AC=1;AF=0.333;AN=3;AS_AltDP=10;AS_QD=4.26;BaseQRankSum=0.081;DP=127;ExcessHet=0.0000;FS=1.802;MQ=52.41;MQRankSum=1.971;QD=4.26;ReadPosRankSum=-0.41;SOR=0.238;VarDP=42 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:60:99:60:.:.:0,154 0|1:32,10:42:99:.:1|0:1198352_G_GCCTCCCTCCCACCTCCCGGGAAGATAGGACAC:179,0,774:1198352:26,6,7,3 +chrX 1198437 . C T 150 . AC=1;AF=0.333;AN=3;AS_AltDP=10;AS_QD=4.29;BaseQRankSum=0.105;DP=128;ExcessHet=0.0000;FS=1.802;MQ=52.69;MQRankSum=1.971;QD=4.29;ReadPosRankSum=-0.668;SOR=0.238;VarDP=42 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:60:99:60:.:.:0,154 0|1:32,10:42:99:.:1|0:1198352_G_GCCTCCCTCCCACCTCCCGGGAAGATAGGACAC:180,0,773:1198352:26,6,7,3 +chrX 1198547 . C T 2440 . AC=2;AF=0.667;AN=3;AS_AltDP=76;AS_QD=32.50;DP=142;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.50;SOR=0.746;VarDP=76 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:99:60:0,154 1/1:0,76:76:99:.:2470,228,0:0,0,37,39 +chrX 1198740 . C CAT 2081.97 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=30.10;DP=122;ExcessHet=0.0000;FS=0.000;MQ=59.95;QD=36.57;SOR=0.693;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:99:60:0,154 1/1:0,58:58:99:.:2121,172,0:0,0,29,29 +chrX 1199928 . A ACGTGTGTTG 2209.97 . AC=2;AF=0.667;AN=3;AS_AltDP=50;AS_QD=30.53;DP=112;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.98;SOR=1.051;VarDP=50 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:60:99:60:.:.:0,154 1|1:0,50:50:99:.:0|1:1199928_A_ACGTGTGTTG:2249,150,0:1199928:0,0,21,29 +chrX 1199932 . A ATATATGT 2333.97 . AC=3;AF=1.00;AN=3;AS_AltDP=81;AS_QD=21.77;BaseQRankSum=0.356;DP=109;ExcessHet=0.0000;FS=13.266;MQ=60.00;MQRankSum=0;QD=21.77;ReadPosRankSum=0.927;SOR=0.881;VarDP=109 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:28,29:57:44:.:.:44,0:.:18,10,11,18 1|1:0,52:52:99:0|1:1199928_A_ACGTGTGTTG:2329,157,0:1199928:0,0,22,30 +chrX 1199934 . G T 2340 . AC=3;AF=1.00;AN=3;AS_AltDP=81;AS_QD=21.74;BaseQRankSum=0.861;DP=114;ExcessHet=0.0000;FS=13.266;MQ=59.93;MQRankSum=0;QD=21.74;ReadPosRankSum=0.942;SOR=0.881;VarDP=109 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:28,29:57:42:.:.:42,0:.:18,10,11,18 1|1:0,52:52:99:0|1:1199928_A_ACGTGTGTTG:2328,156,0:1199928:0,0,22,30 +chrX 1200072 . A ATG 2000.97 . AC=2;AF=0.667;AN=3;AS_AltDP=50;AS_QD=28.40;DP=121;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=40.80;SOR=0.773;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:99:60:0,177 1/1:0,50:50:99:.:2040,150,0:0,0,26,24 +chrX 1200104 . G GTA 1813.97 . AC=2;AF=0.667;AN=3;AS_AltDP=43;AS_QD=26.29;DP=117;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.09;SOR=0.836;VarDP=43 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:60:99:60:.:.:0,177 1|1:0,43:43:99:.:0|1:1200104_G_GTA:1853,129,0:1200104:0,0,20,23 +chrX 1200127 . C A 1979 . AC=2;AF=0.667;AN=3;AS_AltDP=49;AS_QD=33.98;DP=117;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=41.00;SOR=0.733;VarDP=49 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:60:99:60:.:.:0,177 1|1:0,49:49:99:.:0|1:1200104_G_GTA:2009,147,0:1200104:0,0,25,24 +chrX 1200319 . G A 2071 . AC=2;AF=0.667;AN=3;AS_AltDP=49;AS_QD=28.09;DP=111;ExcessHet=0.0000;FS=0.000;MQ=59.69;QD=42.88;SOR=1.112;VarDP=49 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:60:99:60:.:.:0,177 1|1:0,49:49:99:.:0|1:1200319_G_A:2101,147,0:1200319:0,0,20,29 +chrX 1200329 . ATG A 2247.97 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=33.08;DP=112;ExcessHet=0.0000;FS=0.000;MQ=59.69;QD=43.98;SOR=0.941;VarDP=52 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:60:99:60:.:.:0,177 1|1:0,52:52:99:.:0|1:1200319_G_A:2287,157,0:1200319:0,0,23,29 +chrX 1200371 . T C 2310 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=29.60;DP=113;ExcessHet=0.0000;FS=0.000;MQ=59.23;QD=45.00;SOR=0.853;VarDP=52 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:60:99:60:.:.:0,177 1|1:0,52:52:99:.:0|1:1200319_G_A:2340,157,0:1200319:0,0,28,24 +chrX 1200372 . G A 2265 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=28.83;DP=112;ExcessHet=0.0000;FS=0.000;MQ=59.22;QD=45.00;SOR=0.900;VarDP=51 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:60:99:60:.:.:0,177 1|1:0,51:51:99:.:0|1:1200319_G_A:2295,154,0:1200319:0,0,28,23 +chrX 1200405 . G A 2400 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=26.26;DP=115;ExcessHet=0.0000;FS=0.000;MQ=59.26;QD=45.00;SOR=1.022;VarDP=54 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:60:99:60:.:.:0,177 1|1:0,54:54:99:.:0|1:1200319_G_A:2430,163,0:1200319:0,0,31,23 +chrX 1200407 . G GT 2435.97 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=31.82;DP=116;ExcessHet=0.0000;FS=0.000;MQ=59.27;QD=45.00;SOR=1.061;VarDP=55 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:60:99:60:.:.:0,177 1|1:0,55:55:99:.:0|1:1200319_G_A:2475,166,0:1200319:0,0,32,23 +chrX 1200430 . G GTA 2433.97 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=27.81;DP=120;ExcessHet=0.0000;FS=0.000;MQ=59.59;QD=43.39;SOR=0.800;VarDP=57 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:60:99:60:.:.:0,177 1|1:0,57:57:99:.:0|1:1200319_G_A:2473,171,0:1200319:0,0,30,27 +chrX 1200583 . A G 1548 . AC=2;AF=0.667;AN=3;AS_AltDP=37;AS_QD=29.54;DP=115;ExcessHet=0.0000;FS=0.000;MQ=59.04;QD=42.65;SOR=0.957;VarDP=37 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:60:99:60:.:.:0,177 1|1:0,37:37:99:.:0|1:1200583_A_G:1578,117,0:1200583:0,0,14,18 +chrX 1200592 . T TGC 1538.97 . AC=2;AF=0.667;AN=3;AS_AltDP=37;AS_QD=28.47;DP=115;ExcessHet=0.0000;FS=0.000;MQ=59.04;QD=42.65;SOR=0.957;VarDP=37 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:60:99:60:.:.:0,177 1|1:0,37:37:99:.:0|1:1200583_A_G:1578,117,0:1200583:0,0,14,18 +chrX 1200614 . G A 1098 . AC=2;AF=0.667;AN=3;AS_AltDP=27;AS_QD=30.40;DP=105;ExcessHet=0.0000;FS=0.000;MQ=58.39;QD=41.78;SOR=0.874;VarDP=27 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:60:99:60:.:.:0,177 1|1:0,27:27:87:.:0|1:1200583_A_G:1128,87,0:1200583:0,0,10,12 +chrX 1200651 . GTGTGGGTATATATA G 704.97 . AC=2;AF=0.667;AN=3;AS_AltDP=17;AS_QD=32.70;DP=106;ExcessHet=0.0000;FS=0.000;MQ=58.75;QD=43.76;SOR=0.804;VarDP=17 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:60:99:60:.:.:0,177 1|1:0,17:17:40:.:0|1:1200583_A_G:744,40,0:1200583:0,0,9,8 +chrX 1200701 . T C 915 . AC=2;AF=0.667;AN=3;AS_AltDP=22;AS_QD=30.50;BaseQRankSum=-0.445;DP=83;ExcessHet=0.0000;FS=0.000;MQ=59.64;MQRankSum=0;QD=41.09;ReadPosRankSum=0.413;SOR=0.299;VarDP=23 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:60:99:60:.:.:0,177 1|1:1,22:23:24:.:0|1:1200701_T_C:945,24,0:1200701:1,0,12,10 +chrX 1200723 . G A 1213 . AC=2;AF=0.667;AN=3;AS_AltDP=30;AS_QD=27.20;BaseQRankSum=1.491;DP=91;ExcessHet=0.0000;FS=3.452;MQ=59.17;MQRankSum=-0.131;QD=40.10;ReadPosRankSum=0;SOR=0.643;VarDP=31 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:60:99:60:.:.:0,177 1|1:1,30:31:48:.:0|1:1200701_T_C:1243,48,0:1200701:1,0,13,17 +chrX 1200742 . G T 1614 . AC=2;AF=0.667;AN=3;AS_AltDP=43;AS_QD=30.14;BaseQRankSum=-0.41;DP=104;ExcessHet=0.0000;FS=3.212;MQ=57.87;MQRankSum=-0.447;QD=37.36;ReadPosRankSum=-1.143;SOR=0.442;VarDP=44 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:60:99:60:.:.:0,177 1|1:1,43:44:86:.:0|1:1200701_T_C:1644,86,0:1200701:1,0,20,23 +chrX 1200799 . A ATGTGTATATATATGTGTATATAAGCTGTGTATCTATATGTGTGTATATGCG 4126.97 . AC=3;AF=1.00;AN=3;AS_AltDP=119;AS_QD=28.73;BaseQRankSum=0.646;DP=159;ExcessHet=0.0000;FS=4.098;MQ=58.24;MQRankSum=-0.507;QD=28.73;ReadPosRankSum=0.334;SOR=0.874;VarDP=145 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:25,36:61:99:.:.:501,0:.:13,12,13,23 1|1:1,83:84:99:0|1:1200799_A_ATGTGTATATATATGTGTATATAAGCTGTGTATCTATATGTGTGTATATGCG:3665,206,0:1200799:1,0,39,44 +chrX 1200842 . CAT C 2593.97 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=28.06;DP=117;ExcessHet=0.0000;FS=0.000;MQ=58.92;QD=43.88;SOR=1.071;VarDP=60 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:57:64:57:.:.:0,64 1|1:0,60:60:99:.:0|1:1200799_A_ATGTGTATATATATGTGTATATAAGCTGTGTATCTATATGTGTGTATATGCG:2633,181,0:1200799:0,0,35,25 +chrX 1200936 . G T 1935 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=32.75;DP=118;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.75;SOR=0.906;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:57:64:57:0,64 1/1:0,60:60:99:.:1965,180,0:0,0,33,27 +chrX 1201007 . T C 2749 . AC=2;AF=0.667;AN=3;AS_AltDP=65;AS_QD=27.71;DP=122;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=42.75;SOR=0.787;VarDP=65 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:57:64:57:.:.:0,64 1|1:0,65:65:99:.:0|1:1201007_T_C:2779,195,0:1201007:0,0,31,34 +chrX 1201016 . T C 4833 . AC=3;AF=1.00;AN=3;AS_AltDP=120;AS_QD=30.03;DP=121;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=40.53;SOR=0.833;VarDP=120 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,60:60:99:.:.:2230,0:.:0,0,26,34 1|1:0,60:60:99:0|1:1201007_T_C:2633,180,0:1201007:0,0,30,30 +chrX 1201052 . C G 2805 . AC=2;AF=0.667;AN=3;AS_AltDP=64;AS_QD=33.23;DP=126;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.30;SOR=1.044;VarDP=64 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:99:62:.:.:0,154 1|1:0,64:64:99:.:0|1:1201052_C_G:2835,193,0:1201052:0,0,27,37 +chrX 1201063 . T C 2736 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=32.92;DP=125;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.90;SOR=1.010;VarDP=63 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:99:62:.:.:0,154 1|1:0,63:63:99:.:0|1:1201052_C_G:2766,189,0:1201052:0,0,27,36 +chrX 1201096 . T C 1864 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=31.05;DP=124;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.05;SOR=0.941;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,154 1/1:0,61:61:99:.:1894,181,0:0,0,27,34 +chrX 1201150 . G A 1981 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=34.08;DP=123;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=34.08;SOR=0.950;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,154 1/1:0,59:59:99:.:2011,177,0:0,0,26,33 +chrX 1201217 . G A 2474 . AC=3;AF=1.00;AN=3;AS_AltDP=90;AS_QD=20.87;BaseQRankSum=-1.722;DP=122;ExcessHet=0.0000;FS=2.792;MQ=59.96;MQRankSum=-0.951;QD=20.87;ReadPosRankSum=1.361;SOR=0.443;VarDP=120 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:30,31:61:33:.:.:33,0:.:19,11,19,12 1|1:0,59:59:99:0|1:1201217_G_A:2471,178,0:1201217:0,0,31,28 +chrX 1201242 . C A 2353 . AC=3;AF=1.00;AN=3;AS_AltDP=86;AS_QD=20.72;BaseQRankSum=0.343;DP=119;ExcessHet=0.0000;FS=0.000;MQ=59.96;MQRankSum=-0.934;QD=20.72;ReadPosRankSum=0.56;SOR=0.643;VarDP=115 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:29,31:60:78:.:.:78,0:.:17,12,17,14 1|1:0,55:55:99:0|1:1201217_G_A:2305,165,0:1201217:0,0,32,23 +chrX 1201277 . C T,CCTGTGTGTGT 2488 . AC=0,3;AF=0.00,1.00;AN=3;AS_AltDP=2,76;AS_QD=0.00,25.96;BaseQRankSum=0.158;DP=116;ExcessHet=0.0000;FS=8.420;MQ=59.93;MQRankSum=-0.91;QD=25.43;ReadPosRankSum=-1.893;SOR=0.409;VarDP=99 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 2:21,2,21:44:97:.:.:97,1113,0:.:14,7,10,13 2|2:0,0,55:55:99:0|1:1201277_C_CCTGTGTGTGT:2421,2422,2423,165,165,0:1201277:0,0,27,28 +chrX 1201317 . C T 2715 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=26.72;DP=113;ExcessHet=0.0000;FS=0.000;MQ=59.30;QD=45.00;SOR=0.865;VarDP=61 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:50:99:50:.:.:0,104 1|1:0,61:61:99:.:0|1:1201277_C_CCTGTGTGTGT:2745,183,0:1201277:0,0,28,33 +chrX 1201340 . C CTGTG 2730.97 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=32.78;DP=112;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.68;SOR=0.976;VarDP=62 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:50:99:50:.:.:0,104 1|1:0,62:62:99:.:0|1:1201277_C_CCTGTGTGTGT:2770,187,0:1201277:0,0,27,35 +chrX 1201384 . G A 2079 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=35.32;DP=102;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=41.35;SOR=1.094;VarDP=51 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:50:99:50:.:.:0,104 1|1:0,51:51:99:.:0|1:1201277_C_CCTGTGTGTGT:2109,153,0:1201277:0,0,21,30 +chrX 1201481 . TAGAG T 2029.97 . AC=3;AF=1.00;AN=3;AS_AltDP=69;AS_QD=22.74;BaseQRankSum=-1.26;DP=117;ExcessHet=0.0000;FS=0.915;MQ=54.20;MQRankSum=0.19;QD=22.74;ReadPosRankSum=1.176;SOR=0.564;VarDP=91 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:22,27:49:99:.:.:212,0:.:10,12,14,13 1|1:0,42:42:99:0|1:1201481_TAGAG_T:1857,126,0:1201481:0,0,20,22 +chrX 1201526 . G GAGACAGATGATACATAGATAGATGATAGAGAGAT,GAGATAGATGATACATAGATAGATGATAGAGAGAT 3468.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=67,18;AS_QD=30.47,34.22;DP=106;ExcessHet=0.0000;FS=0.000;MQ=57.45;QD=41.27;SOR=0.765;VarDP=85 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 2:0,20,18:38:53:.:.:1425,53,0:.:0,0,19,19 1|1:0,47,0:47:99:0|1:1201481_TAGAG_T:2083,141,0,2083,141,2084:1201481:0,0,25,22 +chrX 1201649 . T TTAGA 2443.97 . AC=3;AF=1.00;AN=3;AS_AltDP=85;AS_QD=21.97;BaseQRankSum=-2.029;DP=125;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=21.97;ReadPosRankSum=-0.569;SOR=0.679;VarDP=113 GT:AD:DP:GQ:PL:SB 1:28,36:64:99:324,0:16,12,18,18 1/1:0,49:49:99:2159,147,0:0,0,30,19 +chrX 1201798 . GGGTA G 2337.97 . AC=3;AF=1.00;AN=3;AS_AltDP=77;AS_QD=23.53;BaseQRankSum=1.822;DP=106;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=23.53;ReadPosRankSum=0.36;SOR=0.719;VarDP=101 GT:AD:DP:GQ:PL:SB 1:23,25:48:82:82,0:12,11,12,13 1/1:1,52:53:99:2295,115,0:0,1,26,26 +chrX 1202027 . G A 1825 . AC=3;AF=1.00;AN=3;AS_AltDP=81;AS_QD=17.34;BaseQRankSum=1.109;DP=111;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=17.34;ReadPosRankSum=-0.845;SOR=0.626;VarDP=107 GT:AD:DP:GQ:PL:SB 1:26,32:58:99:242,0:11,15,15,17 1/1:0,49:49:99:1613,147,0:0,0,21,28 +chrX 1202647 . GT G 4463.97 . AC=3;AF=1.00;AN=3;AS_AltDP=113;AS_QD=25.68;DP=114;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=39.85;SOR=0.903;VarDP=113 GT:AD:DP:GQ:PL:SB 1:0,64:64:99:2575,0:0,0,28,36 1/1:0,49:49:99:1928,147,0:0,0,23,26 +chrX 1202858 . A G 1359 . AC=2;AF=0.667;AN=3;AS_AltDP=40;AS_QD=34.73;DP=111;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=34.73;SOR=0.902;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,139 1/1:0,40:40:99:.:1389,120,0:0,0,22,18 +chrX 1203095 . CAAA C,CAA 543.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=20,8;AS_QD=15.64,3.19;BaseQRankSum=0;DP=104;ExcessHet=0.0000;FS=41.136;MQ=59.05;MQRankSum=0;QD=14.22;ReadPosRankSum=-0.869;SOR=2.776;VarDP=41 GT:AD:DP:GQ:PL:SB 2:8,5,8:21:67:67,419,0:1,7,9,4 0/1:5,15,0:20:35:516,0,35,532,80,613:1,4,14,1 +chrX 1203246 . T C 3652 . AC=3;AF=1.00;AN=3;AS_AltDP=124;AS_QD=29.69;DP=130;ExcessHet=0.0000;FS=0.000;MQ=59.93;QD=29.69;SOR=0.865;VarDP=124 GT:AD:DP:GQ:PL:SB 1:0,68:68:99:2006,0:0,0,36,32 1/1:0,56:56:99:1676,167,0:0,0,31,25 +chrX 1203651 . C T 2964 . AC=3;AF=1.00;AN=3;AS_AltDP=84;AS_QD=29.94;BaseQRankSum=-0.038;DP=103;ExcessHet=0.0000;FS=3.867;MQ=54.54;MQRankSum=-0.327;QD=29.94;ReadPosRankSum=0.164;SOR=0.944;VarDP=100 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:16,32:48:99:.:.:692,0:.:7,9,22,10 1|1:0,52:52:99:0|1:1203651_C_T:2302,156,0:1203651:0,0,27,25 +chrX 1203652 . A G 2964 . AC=3;AF=1.00;AN=3;AS_AltDP=84;AS_QD=29.94;BaseQRankSum=-0.488;DP=104;ExcessHet=0.0000;FS=3.867;MQ=54.59;MQRankSum=-0.327;QD=29.94;ReadPosRankSum=0.219;SOR=0.944;VarDP=100 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:16,32:48:99:.:.:692,0:.:7,9,22,10 1|1:0,52:52:99:0|1:1203651_C_T:2302,156,0:1203651:0,0,27,25 +chrX 1203728 . A C 2465 . AC=3;AF=1.00;AN=3;AS_AltDP=96;AS_QD=21.89;BaseQRankSum=0.251;DP=116;ExcessHet=0.0000;FS=5.229;MQ=59.81;MQRankSum=-0.708;QD=21.89;ReadPosRankSum=-0.081;SOR=0.283;VarDP=114 GT:AD:DP:GQ:PL:SB 1:18,32:50:99:457,0:13,5,23,9 1/1:0,64:64:99:2038,191,0:0,0,32,32 +chrX 1203938 . C A 3550 . AC=3;AF=1.00;AN=3;AS_AltDP=110;AS_QD=32.55;DP=119;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.55;SOR=0.730;VarDP=110 GT:AD:DP:GQ:PL:SB 1:0,62:62:99:2017,0:0,0,34,28 1/1:0,48:48:99:1563,144,0:0,0,20,28 +chrX 1204074 . C G 3173 . AC=3;AF=1.00;AN=3;AS_AltDP=77;AS_QD=28.99;DP=80;ExcessHet=0.0000;FS=0.000;MQ=59.61;QD=41.60;SOR=1.012;VarDP=77 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,39:39:99:.:.:1628,0:.:0,0,24,15 1|1:0,38:38:99:0|1:1204074_C_G:1575,114,0:1204074:0,0,20,18 +chrX 1204096 . A AAAAAAAAAAAG,AAAAAAAAAGAG 2993.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=54,22;AS_QD=29.04,33.75;DP=83;ExcessHet=0.0000;FS=0.000;MQ=58.79;QD=39.91;SOR=1.194;VarDP=76 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 2:0,17,22:39:99:.:.:1401,188,0:.:0,0,22,17 1|1:0,37,0:37:99:0|1:1204074_C_G:1632,111,0,1632,111,1632:1204074:0,0,24,13 +chrX 1204150 . C CTGTGTGTGTGTGTGTG,CTGTGTGTGTGTGTGTGTGTGTGTG,CTGTGTG,CTGTGTGTGTGTGTGTGTG 3103.97 . AC=0,1,1,1;AF=0.00,0.333,0.333,0.333;AN=3;AS_AltDP=8,24,13,17;AS_QD=28.88,27.51,29.33,33.17;DP=98;ExcessHet=0.0000;FS=0.000;MQ=59.16;QD=50.69;SOR=0.758;VarDP=62 GT:AD:DP:GQ:PL:SB 2:0,8,24,0,0:32:99:1660,699,0,1362,1362:0,0,17,15 3/4:0,0,0,13,17:30:99:1483,1383,1367,1383,1367,1367,727,728,728,673,553,553,553,0,485:0,0,15,15 +chrX 1204794 . C T 3643 . AC=3;AF=1.00;AN=3;AS_AltDP=110;AS_QD=33.39;DP=115;ExcessHet=0.0000;FS=0.000;MQ=59.06;QD=33.39;SOR=0.806;VarDP=110 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,56:56:99:.:.:1806,0:.:0,0,30,26 1|1:0,54:54:99:0|1:1204781_T_C:1867,162,0:1204781:0,0,28,26 +chrX 1207501 . ACCC A,AC,ACC,* 674.97 . AC=0,1,1,0;AF=0.00,0.333,0.333,0.00;AN=3;AS_AltDP=9,12,3,5;AS_QD=30.00,30.37,13.70,0.00;BaseQRankSum=1.55;DP=77;ExcessHet=0.0000;FS=7.890;MQ=56.03;MQRankSum=2.649;QD=19.83;ReadPosRankSum=-0.315;SOR=3.126;VarDP=36 GT:AD:DP:GQ:PL:SB 2:1,9,12,0,0:22:97:577,97,0,480,480:1,0,1,20 0/3:6,0,0,3,5:14:19:137,160,480,160,480,480,0,187,187,133,19,385,385,79,550:1,5,1,7 +chrX 1207978 . T A 2177 . AC=1;AF=0.333;AN=3;AS_AltDP=70;AS_QD=31.08;BaseQRankSum=-0.435;DP=107;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=31.08;ReadPosRankSum=-0.659;SOR=0.223;VarDP=71 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,70:71:99:.:2207,0:0,1,35,35 0/0:.:50:25:32:0,25,898 +chrX 1208053 . T C 2237 . AC=1;AF=0.333;AN=3;AS_AltDP=70;AS_QD=32.39;DP=107;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.39;SOR=1.418;VarDP=70 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,70:70:99:.:2267,0:0,0,45,25 0/0:.:50:25:32:0,25,898 +chrX 1208508 . G A 213 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=4.34;BaseQRankSum=-0.139;DP=89;ExcessHet=0.0000;FS=1.038;MQ=60.00;MQRankSum=0;QD=4.34;ReadPosRankSum=0.132;SOR=0.693;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 1:24,32:56:99:.:243,0:11,13,17,15 0/0:.:50:25:32:0,25,898 +chrX 1209203 . A G 381 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=6.97;BaseQRankSum=-0.584;DP=94;ExcessHet=0.0000;FS=1.121;MQ=59.02;MQRankSum=-0.917;QD=6.97;ReadPosRankSum=-0.723;SOR=0.444;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 1:23,36:59:99:.:411,0:6,17,12,24 0/0:.:50:25:32:0,25,898 +chrX 1209266 . G A 282 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=6.00;BaseQRankSum=0.076;DP=91;ExcessHet=0.0000;FS=0.000;MQ=59.33;MQRankSum=-0.277;QD=6.00;ReadPosRankSum=0.121;SOR=0.737;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 1:21,31:52:99:.:312,0:9,12,13,18 0/0:.:50:25:32:0,25,898 +chrX 1209413 . G C 189 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=4.76;BaseQRankSum=0.14;DP=91;ExcessHet=0.0000;FS=8.562;MQ=59.27;MQRankSum=0;QD=4.76;ReadPosRankSum=-0.857;SOR=1.282;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 1:23,23:46:99:.:219,0:14,9,8,15 0/0:.:45:21:43:0,21,855 +chrX 1210111 . A AAAAAG 276.97 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=9.58;BaseQRankSum=1.814;DP=97;ExcessHet=0.0000;FS=1.377;MQ=59.11;MQRankSum=1.478;QD=9.58;ReadPosRankSum=0.774;SOR=0.693;VarDP=33 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:55:99:55:0,109 0/1:20,13:33:99:.:316,0,719:11,9,6,7 +chrX 1210115 . AGAAAAG A 565.97 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=14.40;BaseQRankSum=0.962;DP=98;ExcessHet=0.0000;FS=1.221;MQ=59.13;MQRankSum=-2.021;QD=14.40;ReadPosRankSum=-1.014;SOR=0.460;VarDP=42 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:55:99:55:.:.:0,109 0|1:24,18:42:99:.:0|1:1210115_AGAAAAG_A:605,0,942:1210115:15,9,10,8 +chrX 1210126 . G A 550 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=13.81;BaseQRankSum=0.169;DP=100;ExcessHet=0.0000;FS=2.727;MQ=59.17;MQRankSum=-2.124;QD=13.81;ReadPosRankSum=-0.436;SOR=0.356;VarDP=42 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:55:99:55:.:.:0,109 0|1:25,17:42:99:.:0|1:1210115_AGAAAAG_A:580,0,976:1210115:16,9,9,8 +chrX 1210238 . T C 1194 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=16.77;BaseQRankSum=0.644;DP=129;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=16.77;ReadPosRankSum=-0.144;SOR=0.773;VarDP=73 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:55:99:55:.:.:0,109 0|1:40,33:73:99:.:0|1:1210238_T_C:1224,0,1570:1210238:21,19,18,15 +chrX 1210249 . A G 1269 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=16.65;BaseQRankSum=-1.779;DP=133;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=16.65;ReadPosRankSum=0.3;SOR=0.634;VarDP=78 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:55:99:55:.:.:0,109 0|1:43,35:78:99:.:0|1:1210238_T_C:1299,0,1689:1210238:24,19,19,16 +chrX 1210271 . A G 1234 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=16.85;BaseQRankSum=1.624;DP=133;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=16.85;ReadPosRankSum=-0.673;SOR=0.801;VarDP=75 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:55:99:55:.:.:0,109 0|1:41,34:75:99:.:0|1:1210238_T_C:1264,0,1533:1210238:23,18,20,14 +chrX 1210381 . C T 1106 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=10.23;BaseQRankSum=1.055;DP=114;ExcessHet=0.0000;FS=3.464;MQ=59.88;MQRankSum=0.173;QD=10.23;ReadPosRankSum=1.487;SOR=1.034;VarDP=111 GT:AD:DP:GQ:PL:SB 1:22,28:50:99:291,0:11,11,17,11 0/1:30,31:61:99:845,0,765:15,15,17,14 +chrX 1210390 . T C 322 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=6.77;BaseQRankSum=-2.017;DP=109;ExcessHet=0.0000;FS=3.976;MQ=59.73;MQRankSum=0.222;QD=6.77;ReadPosRankSum=1.195;SOR=1.048;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 1:22,30:52:99:.:352,0:10,12,18,12 0/0:.:57:99:57:0,105,1510 +chrX 1210751 . G A 661 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=13.82;BaseQRankSum=-0.948;DP=62;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.82;ReadPosRankSum=-1.827;SOR=0.682;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:33:35:11:0,35 0/1:24,26:50:99:.:691,0,652:11,13,12,14 +chrX 1210802 . A G 536 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=11.79;BaseQRankSum=0.235;DP=65;ExcessHet=0.0000;FS=1.101;MQ=60.00;MQRankSum=0;QD=11.79;ReadPosRankSum=1.809;SOR=0.905;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:33:35:11:0,35 0/1:27,21:48:99:.:566,0,749:13,14,9,12 +chrX 1211139 . A G 862 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=21.24;BaseQRankSum=0.845;DP=53;ExcessHet=0.0000;FS=6.548;MQ=60.00;MQRankSum=0;QD=21.24;ReadPosRankSum=-0.082;SOR=0.501;VarDP=42 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:33:35:11:.:.:0,35 0|1:18,24:42:99:.:0|1:1211139_A_G:892,0,632:1211139:12,6,11,13 +chrX 1211166 . TG T 973.97 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=22.02;BaseQRankSum=-0.091;DP=57;ExcessHet=0.0000;FS=6.133;MQ=60.00;MQRankSum=0;QD=22.02;ReadPosRankSum=0.917;SOR=0.506;VarDP=46 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:33:35:11:.:.:0,35 0|1:20,26:46:99:.:0|1:1211139_A_G:1013,0,762:1211139:13,7,12,14 +chrX 1211169 . ATGG A 970.97 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=21.49;BaseQRankSum=-1.39;DP=61;ExcessHet=0.0000;FS=4.196;MQ=60.00;MQRankSum=0;QD=21.49;ReadPosRankSum=0.565;SOR=0.557;VarDP=47 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:33:35:11:.:.:0,35 0|1:21,26:47:99:.:0|1:1211139_A_G:1010,0,793:1211139:13,8,12,14 +chrX 1211257 . G GTGGA 633.97 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=17.71;BaseQRankSum=0.259;DP=65;ExcessHet=0.0000;FS=4.846;MQ=56.39;MQRankSum=0;QD=17.71;ReadPosRankSum=0.337;SOR=1.565;VarDP=38 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:33:35:11:0,35 0/1:20,18:38:99:.:673,0,761:9,11,5,13 +chrX 1211995 . C A 1825 . AC=3;AF=1.00;AN=3;AS_AltDP=59;AS_QD=31.44;DP=78;ExcessHet=0.0000;FS=0.000;MQ=59.79;QD=31.44;SOR=0.796;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:1002,0:0,0,14,17 1/1:0,28:28:83:853,83,0:0,0,14,14 +chrX 1212252 . G A 827 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=8.08;BaseQRankSum=3.035;DP=109;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=8.08;ReadPosRankSum=1.119;SOR=0.693;VarDP=106 GT:AD:DP:GQ:PL:SB 1:25,29:54:99:233,0:10,15,13,16 0/1:29,23:52:99:624,0,772:17,12,13,10 +chrX 1212289 . C T 1051 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=11.03;BaseQRankSum=2.828;DP=100;ExcessHet=0.0000;FS=0.749;MQ=60.00;MQRankSum=0;QD=11.03;ReadPosRankSum=0.413;SOR=0.606;VarDP=98 GT:AD:DP:GQ:PL:SB 1:16,27:43:99:352,0:5,11,12,15 0/1:29,26:55:99:729,0,728:16,13,14,12 +chrX 1212386 . A G 146 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=5.18;BaseQRankSum=-0.998;DP=85;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=5.18;ReadPosRankSum=0.508;SOR=0.976;VarDP=34 GT:AD:DP:GQ:MIN_DP:PL:SB 1:14,20:34:99:.:176,0:9,5,14,6 0/0:.:50:98:50:0,98,1298 +chrX 1212416 . C CAG 1097.97 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=24.19;BaseQRankSum=0.501;DP=82;ExcessHet=0.0000;FS=1.157;MQ=59.88;MQRankSum=-0.744;QD=24.19;ReadPosRankSum=1.391;SOR=0.592;VarDP=47 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:33:99:33:.:.:0,943 0|1:18,29:47:99:.:0|1:1212416_C_CAG:1137,0,668:1212416:8,10,15,14 +chrX 1212418 . GAAAAA GAAAAAAA,G 1210.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=23,29;AS_QD=2.19,14.88;BaseQRankSum=0.15;DP=114;ExcessHet=0.0000;FS=1.634;MQ=59.51;MQRankSum=0;QD=12.89;ReadPosRankSum=1.762;SOR=0.542;VarDP=97 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:15,23,0:38:99:.:.:149,0,587:.:7,8,8,15 0|2:30,0,29:59:99:0|1:1212416_C_CAG:1101,1191,2412,0,1220,1133:1212416:11,19,15,14 +chrX 1212806 . A AACAC,AACACACAC 1476.97 . AC=0,2;AF=0.00,0.667;AN=3;AS_AltDP=9,35;AS_QD=22.30,30.94;BaseQRankSum=0.436;DP=92;ExcessHet=0.0000;FS=1.283;MQ=59.43;MQRankSum=-1.13;QD=26.14;ReadPosRankSum=-0.758;SOR=1.058;VarDP=58 GT:AD:DP:GQ:PL:SB 2:0,9,14:23:99:718,205,0:0,0,4,19 0/2:14,0,21:35:99:798,841,1430,0,589,525:5,9,9,12 +chrX 1213715 . CT C 194.97 . AC=1;AF=0.333;AN=3;AS_AltDP=10;AS_QD=10.64;BaseQRankSum=-1.004;DP=39;ExcessHet=0.0000;FS=2.430;MQ=60.00;MQRankSum=0;QD=10.64;ReadPosRankSum=-0.561;SOR=0.223;VarDP=22 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:7:35:5:0,35 0/1:12,10:22:99:.:234,0,282:11,1,8,2 +chrX 1215976 . C A 196 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=3.90;BaseQRankSum=1.285;DP=99;ExcessHet=0.0000;FS=1.019;MQ=59.80;MQRankSum=0;QD=3.90;ReadPosRankSum=0.18;SOR=0.514;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 1:26,32:58:99:.:226,0:10,16,14,18 0/0:.:54:20:36:0,20,909 +chrX 1216077 . A G 87 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=2.05;BaseQRankSum=-0.81;DP=99;ExcessHet=0.0000;FS=2.235;MQ=59.71;MQRankSum=-0.881;QD=2.05;ReadPosRankSum=-1.09;SOR=0.450;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 1:26,31:57:99:.:117,0:9,17,13,18 0/0:.:54:20:36:0,20,909 +chrX 1216334 . T C 84 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=2.48;BaseQRankSum=-1.397;DP=83;ExcessHet=0.0000;FS=4.351;MQ=60.00;MQRankSum=0;QD=2.48;ReadPosRankSum=1.853;SOR=1.473;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 1:21,25:46:99:.:114,0:11,10,17,8 0/0:.:54:20:36:0,20,909 +chrX 1216699 . C CA 359.97 . AC=2;AF=0.667;AN=3;AS_AltDP=25;AS_QD=13.76;BaseQRankSum=0.541;DP=108;ExcessHet=0.0000;FS=9.717;MQ=57.97;MQRankSum=-0.658;QD=13.76;ReadPosRankSum=-1.51;SOR=0.182;VarDP=29 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:99:56:0,1181 1/1:4,25:29:15:.:399,15,0:4,0,12,13 +chrX 1216929 . C T 2420 . AC=2;AF=0.667;AN=3;AS_AltDP=78;AS_QD=21.30;BaseQRankSum=2.046;DP=123;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=21.30;ReadPosRankSum=-1.661;SOR=0.692;VarDP=115 GT:AD:DP:GQ:PL:SB 1:0,46:46:99:1589,0:0,0,26,20 0/1:37,32:69:99:861,0,939:19,18,14,18 +chrX 1217815 . A G 1691 . AC=1;AF=0.333;AN=3;AS_AltDP=53;AS_QD=32.47;DP=106;ExcessHet=0.0000;FS=0.000;MQ=59.22;QD=32.47;SOR=0.730;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,53:53:99:.:1721,0:0,0,26,27 0/0:.:55:23:49:0,23,1054 +chrX 1218626 . CATAG CATAGATAGATAG,C 1163.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=39,13;AS_QD=12.03,15.40;BaseQRankSum=-1.047;DP=114;ExcessHet=0.0000;FS=0.973;MQ=59.80;MQRankSum=1.067;QD=16.26;ReadPosRankSum=1.387;SOR=0.941;VarDP=74 GT:AD:DP:GQ:PL:SB 1:22,23,0:45:33:33,0,1004:11,11,11,12 1/2:0,16,13:29:99:1170,519,469,649,0,631:0,0,12,17 +chrX 1218744 . TA T 1108.97 . AC=2;AF=0.667;AN=3;AS_AltDP=46;AS_QD=15.73;BaseQRankSum=1.77;DP=104;ExcessHet=0.0000;FS=3.319;MQ=59.86;MQRankSum=0;QD=15.73;ReadPosRankSum=-0.661;SOR=0.365;VarDP=73 GT:AD:DP:GQ:PL:SB 1:18,27:45:99:385,0:8,10,12,15 0/1:9,19:28:99:763,0,320:2,7,10,9 +chrX 1218748 . T TA,TAGATGATA,TGATA 3737.97 . AC=2,0,1;AF=0.667,0.00,0.333;AN=3;AS_AltDP=46,18,7;AS_QD=29.75,23.71,28.46;DP=107;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=53.20;SOR=0.971;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,27,18,0:45:99:2138,0,393,1670:0,0,20,25 1/3:0,19,0,7:26:99:1639,333,320,1403,377,1404,823,0,829,763:0,0,11,15 +chrX 1218824 . C CGATA 691.97 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=21.50;BaseQRankSum=-2.148;DP=109;ExcessHet=0.0000;FS=11.024;MQ=60.00;MQRankSum=0;QD=21.50;ReadPosRankSum=0.468;SOR=0.266;VarDP=34 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,774 0/1:15,19:34:99:.:731,0,565:12,3,9,10 +chrX 1219473 . G A 2179 . AC=2;AF=0.667;AN=3;AS_AltDP=70;AS_QD=24.01;BaseQRankSum=1.903;DP=97;ExcessHet=0.0000;FS=3.309;MQ=59.95;MQRankSum=0;QD=24.01;ReadPosRankSum=-0.514;SOR=0.824;VarDP=92 GT:AD:DP:GQ:PL:SB 1:1,53:54:99:1732,0:1,0,24,29 0/1:21,17:38:99:477,0,570:11,10,7,10 +chrX 1219511 . G GATACATAC 2305.97 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=30.86;BaseQRankSum=1.391;DP=111;ExcessHet=0.0000;FS=3.740;MQ=59.99;MQRankSum=0;QD=30.86;ReadPosRankSum=-0.577;SOR=0.462;VarDP=76 GT:AD:DP:GQ:PL:SB 1:1,42:43:99:1725,0:1,0,22,20 0/1:17,16:33:99:620,0,655:6,11,8,8 +chrX 1220493 . G C 259 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=5.90;BaseQRankSum=1.147;DP=112;ExcessHet=0.0000;FS=2.450;MQ=60.00;MQRankSum=0;QD=5.90;ReadPosRankSum=0.934;SOR=0.908;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 1:19,30:49:99:.:289,0:9,10,17,13 0/0:.:58:43:58:0,43,1092 +chrX 1227535 . A AGGAT 379.97 . AC=2;AF=0.667;AN=3;AS_AltDP=18;AS_QD=11.64;BaseQRankSum=-0.902;DP=67;ExcessHet=0.0000;FS=3.012;MQ=59.22;MQRankSum=0.728;QD=11.64;ReadPosRankSum=0.106;SOR=0.255;VarDP=36 GT:AD:DP:GQ:PL:SB 1:7,8:15:44:44,0:4,3,5,3 0/1:11,10:21:99:375,0,432:8,3,4,6 +chrX 1228286 . G T 2495 . AC=2;AF=0.667;AN=3;AS_AltDP=83;AS_QD=22.54;BaseQRankSum=2.139;DP=121;ExcessHet=0.0000;FS=1.739;MQ=59.96;MQRankSum=0;QD=22.54;ReadPosRankSum=-0.312;SOR=0.908;VarDP=112 GT:AD:DP:GQ:PL:SB 1:1,56:57:99:1782,0:1,0,28,28 0/1:28,27:55:99:743,0,708:13,15,8,19 +chrX 1231354 . G GA 603.97 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=20.09;DP=88;ExcessHet=0.0000;FS=0.000;MQ=59.22;QD=20.09;SOR=0.818;VarDP=32 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,32:32:99:.:643,0:0,0,17,15 0/0:.:45:26:40:0,26,1000 +chrX 1232322 . T C 3992 . AC=3;AF=1.00;AN=3;AS_AltDP=123;AS_QD=32.70;DP=127;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.70;SOR=0.963;VarDP=123 GT:AD:DP:GQ:PL:SB 1:0,63:63:99:2057,0:0,0,36,27 1/1:0,60:60:99:1965,180,0:0,0,33,27 +chrX 1232787 . G C 4270 . AC=3;AF=1.00;AN=3;AS_AltDP=137;AS_QD=31.39;DP=140;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.39;SOR=0.933;VarDP=137 GT:AD:DP:GQ:PL:SB 1:0,72:72:99:2191,0:0,0,35,37 1/1:0,65:65:99:2109,195,0:0,0,26,39 +chrX 1232823 . G A 4075 . AC=3;AF=1.00;AN=3;AS_AltDP=123;AS_QD=33.37;DP=130;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.37;SOR=0.848;VarDP=123 GT:AD:DP:GQ:PL:SB 1:0,68:68:99:2233,0:0,0,41,27 1/1:0,55:55:99:1872,165,0:0,0,25,30 +chrX 1232867 . G A 4017 . AC=3;AF=1.00;AN=3;AS_AltDP=128;AS_QD=31.37;BaseQRankSum=-0.597;DP=135;ExcessHet=0.0000;FS=3.112;MQ=59.94;MQRankSum=0;QD=31.37;ReadPosRankSum=0.198;SOR=0.323;VarDP=129 GT:AD:DP:GQ:PL:SB 1:1,69:70:99:2118,0:1,0,37,32 1/1:0,59:59:99:1929,177,0:0,0,25,34 +chrX 1233300 . G GA 984.97 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=23.81;BaseQRankSum=-1.706;DP=114;ExcessHet=0.0000;FS=15.826;MQ=60.00;MQRankSum=0;QD=23.81;ReadPosRankSum=0.695;SOR=0.468;VarDP=43 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:99:62:.:.:0,129 0|1:16,27:43:99:.:0|1:1233300_G_GA:1024,0,534:1233300:13,3,12,15 +chrX 1233320 . G A 1009 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=24.16;BaseQRankSum=0.294;DP=107;ExcessHet=0.0000;FS=15.826;MQ=60.00;MQRankSum=0;QD=24.16;ReadPosRankSum=-0.013;SOR=0.468;VarDP=43 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:99:62:.:.:0,129 0|1:16,27:43:99:.:0|1:1233300_G_GA:1039,0,540:1233300:13,3,12,15 +chrX 1233402 . C T 704 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=15.29;BaseQRankSum=-0.271;DP=112;ExcessHet=0.0000;FS=1.190;MQ=60.00;MQRankSum=0;QD=15.29;ReadPosRankSum=-0.073;SOR=0.420;VarDP=48 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:99:62:.:.:0,129 0|1:28,20:48:99:.:0|1:1233402_C_T:734,0,1095:1233402:19,9,12,8 +chrX 1233421 . T C 818 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=15.42;BaseQRankSum=0.727;DP=119;ExcessHet=0.0000;FS=0.000;MQ=59.70;MQRankSum=-1.143;QD=15.42;ReadPosRankSum=0.141;SOR=0.584;VarDP=55 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:99:62:.:.:0,129 0|1:32,23:55:99:.:0|1:1233402_C_T:848,0,1274:1233402:19,13,13,10 +chrX 1233424 . A G 776 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=14.93;BaseQRankSum=0.462;DP=119;ExcessHet=0.0000;FS=0.000;MQ=59.70;MQRankSum=-1.168;QD=14.93;ReadPosRankSum=0.123;SOR=0.673;VarDP=54 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:99:62:.:.:0,129 0|1:32,22:54:99:.:0|1:1233402_C_T:806,0,1277:1233402:19,13,13,9 +chrX 1233519 . G A 783 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=12.90;BaseQRankSum=1.103;DP=129;ExcessHet=0.0000;FS=8.911;MQ=59.71;MQRankSum=0;QD=12.90;ReadPosRankSum=1.432;SOR=1.471;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,129 0/1:33,30:63:99:.:813,0,927:15,18,20,10 +chrX 1233671 . C T 473 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=12.58;BaseQRankSum=0.089;DP=106;ExcessHet=0.0000;FS=0.000;MQ=59.19;MQRankSum=-1.812;QD=12.58;ReadPosRankSum=0.825;SOR=0.738;VarDP=40 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:99:62:.:.:0,129 0|1:25,15:40:99:.:0|1:1233671_C_T:503,0,892:1233671:12,13,7,8 +chrX 1233693 . G C 492 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=13.05;BaseQRankSum=-0.25;DP=103;ExcessHet=0.0000;FS=1.264;MQ=59.76;MQRankSum=-1.174;QD=13.05;ReadPosRankSum=-0.097;SOR=0.832;VarDP=40 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:99:62:.:.:0,129 0|1:24,16:40:99:.:0|1:1233671_C_T:522,0,916:1233671:11,13,9,7 +chrX 1233704 . CA C 123.97 . AC=1;AF=0.333;AN=3;AS_AltDP=10;AS_QD=7.09;BaseQRankSum=0.18;DP=101;ExcessHet=0.0000;FS=1.674;MQ=59.47;MQRankSum=0.965;QD=7.09;ReadPosRankSum=-0.792;SOR=1.003;VarDP=23 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,129 0/1:13,10:23:99:.:163,0,246:7,6,4,6 +chrX 1233919 . AAC A 946.97 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=18.60;BaseQRankSum=1.207;DP=118;ExcessHet=0.0000;FS=0.000;MQ=59.70;MQRankSum=-0.838;QD=18.60;ReadPosRankSum=1.232;SOR=0.616;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,129 0/1:23,30:53:99:.:986,0,761:12,11,15,15 +chrX 1234713 . TTA T 818.97 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=19.50;BaseQRankSum=0.461;DP=112;ExcessHet=0.0000;FS=12.092;MQ=59.90;MQRankSum=-0.955;QD=19.50;ReadPosRankSum=-0.704;SOR=0.411;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,129 0/1:22,22:44:99:.:858,0,840:17,5,10,12 +chrX 1235377 . C G 258 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=8.00;BaseQRankSum=0.391;DP=98;ExcessHet=0.0000;FS=0.000;MQ=48.17;MQRankSum=0.502;QD=8.00;ReadPosRankSum=1.78;SOR=0.538;VarDP=36 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,129 0/1:23,13:36:99:.:288,0,582:8,15,5,8 +chrX 1236674 . C T 588 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=9.22;BaseQRankSum=-0.06;DP=130;ExcessHet=0.0000;FS=0.969;MQ=51.78;MQRankSum=-5.311;QD=9.22;ReadPosRankSum=0.739;SOR=0.904;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,129 0/1:42,25:67:99:.:618,0,1181:19,23,10,15 +chrX 1237555 . C T 803 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=13.88;BaseQRankSum=1.58;DP=126;ExcessHet=0.0000;FS=2.182;MQ=60.00;MQRankSum=0;QD=13.88;ReadPosRankSum=-1.347;SOR=1.001;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,129 0/1:29,31:60:99:.:833,0,713:15,14,13,18 +chrX 1238797 . G A 433 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=9.08;BaseQRankSum=-0.783;DP=107;ExcessHet=0.0000;FS=1.101;MQ=59.13;MQRankSum=0.455;QD=9.08;ReadPosRankSum=0.545;SOR=0.601;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 1:20,31:51:99:.:463,0:11,9,15,16 0/0:.:55:51:55:0,51,1218 +chrX 1238808 . C T 468 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=9.96;BaseQRankSum=-0.397;DP=105;ExcessHet=0.0000;FS=0.000;MQ=59.09;MQRankSum=0.51;QD=9.96;ReadPosRankSum=0.452;SOR=0.671;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 1:19,31:50:99:.:498,0:10,9,15,16 0/0:.:55:51:55:0,51,1218 +chrX 1238906 . T TAATA 1764.97 . AC=2;AF=0.667;AN=3;AS_AltDP=41;AS_QD=33.81;DP=104;ExcessHet=0.0000;FS=0.000;MQ=59.90;QD=44.00;SOR=1.206;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:55:55:54:0,55 1/1:0,41:41:99:.:1804,123,0:0,0,25,16 +chrX 1239188 . G GAGA 2483.97 . AC=3;AF=1.00;AN=3;AS_AltDP=91;AS_QD=20.18;BaseQRankSum=0.721;DP=135;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=20.18;ReadPosRankSum=-1.087;SOR=0.674;VarDP=125 GT:AD:DP:GQ:PL:SB 1:34,36:70:88:88,0:12,22,13,23 1/1:0,55:55:99:2435,165,0:0,0,20,35 +chrX 1239278 . C T 2829 . AC=2;AF=0.667;AN=3;AS_AltDP=64;AS_QD=30.17;DP=128;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.67;SOR=0.822;VarDP=64 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:99:62:.:.:0,100 1|1:0,64:64:99:.:0|1:1239278_C_T:2859,193,0:1239278:0,0,34,30 +chrX 1239282 . T A 2805 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=31.26;DP=126;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=45.00;SOR=0.859;VarDP=63 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:99:62:.:.:0,100 1|1:0,63:63:99:.:0|1:1239278_C_T:2835,190,0:1239278:0,0,34,29 +chrX 1239292 . TA T 2698.97 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=30.59;DP=125;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.16;SOR=1.143;VarDP=62 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:99:62:.:.:0,100 1|1:0,62:62:99:.:0|1:1239278_C_T:2738,187,0:1239278:0,0,37,25 +chrX 1239545 . A G 32 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=1.32;BaseQRankSum=-3.949;DP=109;ExcessHet=0.0000;FS=2.628;MQ=59.74;MQRankSum=-0.818;QD=1.32;ReadPosRankSum=-1.109;SOR=0.363;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 1:20,27:47:62:.:62,0:6,14,11,16 0/0:.:61:99:61:0,101,1414 +chrX 1240016 . C T 1787 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=33.04;DP=118;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.04;SOR=1.061;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,1035 1/1:0,55:55:99:.:1817,165,0:0,0,23,32 +chrX 1240099 . G C 4245 . AC=3;AF=1.00;AN=3;AS_AltDP=135;AS_QD=31.67;DP=138;ExcessHet=0.0000;FS=0.000;MQ=59.94;QD=31.67;SOR=0.902;VarDP=135 GT:AD:DP:GQ:PL:SB 1:0,83:83:99:2639,0:0,0,46,37 1/1:0,52:52:99:1636,155,0:0,0,28,24 +chrX 1240387 . C A 3102 . AC=3;AF=1.00;AN=3;AS_AltDP=95;AS_QD=32.63;BaseQRankSum=2.569;DP=100;ExcessHet=0.0000;FS=3.912;MQ=59.12;MQRankSum=-0.294;QD=32.63;ReadPosRankSum=-1.445;SOR=0.901;VarDP=96 GT:AD:DP:GQ:PL:SB 1:1,53:54:99:1742,0:0,1,33,20 1/1:0,42:42:99:1390,126,0:0,0,24,18 +chrX 1240628 . C G 4449 . AC=3;AF=1.00;AN=3;AS_AltDP=123;AS_QD=30.71;DP=125;ExcessHet=0.0000;FS=0.000;MQ=59.72;QD=36.41;SOR=1.179;VarDP=123 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,66:66:99:.:.:2134,0:.:0,0,23,43 1|1:0,57:57:99:0|1:1240628_C_G:2345,171,0:1240628:0,0,26,31 +chrX 1240641 . CA C 2300.97 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=27.16;DP=134;ExcessHet=0.0000;FS=0.000;MQ=59.21;QD=41.05;SOR=0.800;VarDP=57 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:72:99:72:.:.:0,1800 1|1:0,57:57:99:.:0|1:1240628_C_G:2340,171,0:1240628:0,0,27,30 +chrX 1240771 . G C 1650 . AC=3;AF=1.00;AN=3;AS_AltDP=81;AS_QD=15.14;BaseQRankSum=1.07;DP=116;ExcessHet=0.0000;FS=4.056;MQ=60.00;MQRankSum=0;QD=15.14;ReadPosRankSum=0.174;SOR=0.697;VarDP=111 GT:AD:DP:GQ:PL:SB 1:30,29:59:13:13,0:17,13,13,16 1/1:0,52:52:99:1667,155,0:0,0,24,28 +chrX 1240858 . G GTCTCTCTCTGAGGGATGGAGATTTGGGGTGAGTGTGGA 673.97 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=32.41;BaseQRankSum=-0.682;DP=81;ExcessHet=0.0000;FS=0.000;MQ=57.16;MQRankSum=-1.247;QD=32.41;ReadPosRankSum=-0.897;SOR=0.446;VarDP=22 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:44:84:44:0,84 0/1:4,18:22:99:.:713,0,118:1,3,7,11 +chrX 1240862 . C CTCTCTGAGGGATGGAGATTTGGGGTGAGTGTGGA 112.97 . AC=1;AF=0.333;AN=3;AS_AltDP=5;AS_QD=6.61;BaseQRankSum=0.768;DP=81;ExcessHet=0.0000;FS=0.000;MQ=56.11;MQRankSum=0.595;QD=6.61;ReadPosRankSum=0.299;SOR=0.582;VarDP=23 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:44:84:44:0,84 0/1:18,5:23:99:.:152,0,718:7,11,2,3 +chrX 1241333 . G GTCTCTCTCTGAGGGATGGAGATTTGGGGTGAGTGGGGA 504.97 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=13.95;BaseQRankSum=-0.227;DP=51;ExcessHet=0.0000;FS=6.884;MQ=58.28;MQRankSum=-1.04;QD=13.95;ReadPosRankSum=-1.885;SOR=0.744;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:36:39:6:0,39 0/1:20,19:39:99:.:544,0,598:7,13,11,8 +chrX 1241733 . A G 612 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=16.46;BaseQRankSum=-1.029;DP=47;ExcessHet=0.0000;FS=1.235;MQ=60.00;MQRankSum=0;QD=16.46;ReadPosRankSum=0.592;SOR=0.465;VarDP=39 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:36:39:6:.:.:0,39 0|1:21,18:39:99:.:0|1:1241733_A_G:642,0,776:1241733:9,12,9,9 +chrX 1241747 . T A 1465 . AC=2;AF=0.667;AN=3;AS_AltDP=38;AS_QD=29.97;DP=47;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=39.34;SOR=0.798;VarDP=38 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:36:39:6:.:.:0,39 1|1:0,38:38:99:.:0|1:1241733_A_G:1495,114,0:1241733:0,0,20,18 +chrX 1241755 . A G 681 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=18.23;BaseQRankSum=-0.896;DP=48;ExcessHet=0.0000;FS=1.236;MQ=60.00;MQRankSum=0;QD=18.23;ReadPosRankSum=-0.658;SOR=0.818;VarDP=39 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:36:39:6:.:.:0,39 0|1:19,20:39:99:.:0|1:1241733_A_G:711,0,707:1241733:9,10,11,9 +chrX 1242369 . A G 411 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=8.32;BaseQRankSum=-0.967;DP=114;ExcessHet=0.0000;FS=2.451;MQ=59.35;MQRankSum=2.158;QD=8.32;ReadPosRankSum=0.176;SOR=0.387;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 1:19,34:53:99:.:441,0:12,7,18,16 0/0:.:59:56:59:0,56,1101 +chrX 1242442 . T G 587 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=15.82;BaseQRankSum=-0.75;DP=102;ExcessHet=0.0000;FS=2.875;MQ=59.62;MQRankSum=-0.782;QD=15.82;ReadPosRankSum=0.071;SOR=0.457;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,1349 0/1:16,23:39:99:.:617,0,419:6,10,12,11 +chrX 1242535 . C A 655 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=14.27;BaseQRankSum=0.519;DP=108;ExcessHet=0.0000;FS=1.079;MQ=60.00;MQRankSum=0;QD=14.27;ReadPosRankSum=-0.527;SOR=0.540;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,1349 0/1:23,25:48:99:.:685,0,605:13,10,13,12 +chrX 1242773 . C T 1632 . AC=2;AF=0.667;AN=3;AS_AltDP=69;AS_QD=13.30;BaseQRankSum=-2.035;DP=133;ExcessHet=0.0000;FS=15.044;MQ=59.68;MQRankSum=0;QD=13.30;ReadPosRankSum=0.239;SOR=0.928;VarDP=125 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:28,49:77:99:.:.:927,0:.:18,10,19,30 0|1:28,20:48:99:0|1:1242773_C_T:735,0,1105:1242773:16,12,9,11 +chrX 1242781 . A C 1909 . AC=2;AF=0.667;AN=3;AS_AltDP=72;AS_QD=15.27;BaseQRankSum=-1.726;DP=129;ExcessHet=0.0000;FS=17.173;MQ=59.67;MQRankSum=0;QD=15.27;ReadPosRankSum=-0.393;SOR=1.270;VarDP=127 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:26,51:77:99:.:.:1145,0:.:16,10,18,33 0|1:29,21:50:99:0|1:1242773_C_T:794,0,1154:1242773:16,13,8,13 +chrX 1242782 . C T 2004 . AC=2;AF=0.667;AN=3;AS_AltDP=74;AS_QD=15.89;BaseQRankSum=-1.473;DP=130;ExcessHet=0.0000;FS=14.885;MQ=59.68;MQRankSum=0;QD=15.89;ReadPosRankSum=-0.482;SOR=1.160;VarDP=128 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:25,53:78:99:.:.:1240,0:.:15,10,20,33 0|1:29,21:50:99:0|1:1242773_C_T:794,0,1154:1242773:16,13,8,13 +chrX 1242796 . A G 1053 . AC=1;AF=0.333;AN=3;AS_AltDP=51;AS_QD=14.06;BaseQRankSum=1.951;DP=132;ExcessHet=0.0000;FS=15.549;MQ=59.56;MQRankSum=-1.237;QD=14.06;ReadPosRankSum=-0.593;SOR=1.435;VarDP=77 GT:AD:DP:GQ:MIN_DP:PL:SB 1:26,51:77:99:.:1083,0:16,10,17,34 0/0:.:53:42:53:0,42,1052 +chrX 1243117 . A G 297 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=6.67;BaseQRankSum=-1.103;DP=107;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=6.67;ReadPosRankSum=-1.909;SOR=0.551;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 1:18,31:49:99:.:327,0:5,13,10,21 0/0:.:53:42:53:0,42,1052 +chrX 1243320 . G A 692 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=7.08;BaseQRankSum=1.76;DP=106;ExcessHet=0.0000;FS=2.581;MQ=60.00;MQRankSum=0;QD=7.08;ReadPosRankSum=-1.335;SOR=0.511;VarDP=102 GT:AD:DP:GQ:PL:SB 1:26,27:53:85:85,0:14,12,12,15 0/1:25,24:49:99:637,0,646:15,10,13,11 +chrX 1243666 . T TAA 838.97 . AC=3;AF=1.00;AN=3;AS_AltDP=48;AS_QD=14.39;BaseQRankSum=1.044;DP=92;ExcessHet=0.0000;FS=2.667;MQ=59.64;MQRankSum=-0.784;QD=14.39;ReadPosRankSum=-1.305;SOR=0.368;VarDP=61 GT:AD:DP:GQ:PL:SB 1:13,18:31:54:54,0:5,8,11,7 1/1:0,30:30:89:824,89,0:0,0,13,17 +chrX 1244479 . G GAGAA 1939.97 . AC=1;AF=0.333;AN=3;AS_AltDP=45;AS_QD=27.77;DP=72;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.98;SOR=1.038;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,45:45:99:.:1979,0:0,0,26,19 0/0:.:23:33:19:0,33,495 +chrX 1244565 . A AGGCGAG 275.97 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=11.67;BaseQRankSum=0.456;DP=48;ExcessHet=0.0000;FS=0.000;MQ=56.78;MQRankSum=-1.816;QD=11.67;ReadPosRankSum=-0.276;SOR=1.302;VarDP=27 GT:AD:DP:GQ:MIN_DP:PL:SB 1:10,17:27:99:.:315,0:10,0,17,0 0/0:.:23:33:19:0,33,495 +chrX 1244588 . G GAA 275.97 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=15.00;BaseQRankSum=0.586;DP=49;ExcessHet=0.0000;FS=0.000;MQ=56.40;MQRankSum=-1.698;QD=15.00;ReadPosRankSum=-1.12;SOR=1.508;VarDP=21 GT:AD:DP:GQ:MIN_DP:PL:SB 1:7,14:21:99:.:315,0:7,0,14,0 0/0:.:24:23:23:0,23,690 +chrX 1244589 . G GGGAAGGGA 275.97 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=15.00;BaseQRankSum=1.265;DP=49;ExcessHet=0.0000;FS=0.000;MQ=56.40;MQRankSum=-1.698;QD=15.00;ReadPosRankSum=-0.93;SOR=1.508;VarDP=21 GT:AD:DP:GQ:MIN_DP:PL:SB 1:7,14:21:99:.:315,0:7,0,14,0 0/0:.:24:23:23:0,23,690 +chrX 1244594 . G GGGAAGGGAAGGGA,A 780 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=7,10;AS_QD=33.65,27.12;DP=49;ExcessHet=0.0000;FS=0.000;MQ=55.05;QD=47.65;SOR=5.784;VarDP=17 GT:AD:DP:GQ:MIN_DP:PL:SB 2:0,7,10:17:99:.:810,135,0:0,0,17,0 0/0:.:24:23:23:0,23,690,23,690,690 +chrX 1244599 . G A 1435 . AC=2;AF=0.667;AN=3;AS_AltDP=35;AS_QD=29.90;BaseQRankSum=-0.282;DP=54;ExcessHet=0.0000;FS=7.153;MQ=57.35;MQRankSum=0;QD=29.90;ReadPosRankSum=1.923;SOR=2.851;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,25:25:99:.:.:1122,0:.:0,0,25,0 0|1:14,10:24:99:0|1:1244599_G_A:343,0,475:1244599:12,2,9,1 +chrX 1244609 . G A 1374 . AC=2;AF=0.667;AN=3;AS_AltDP=34;AS_QD=27.00;BaseQRankSum=2.386;DP=63;ExcessHet=0.0000;FS=18.176;MQ=57.73;MQRankSum=0;QD=27.00;ReadPosRankSum=1.608;SOR=3.990;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,24:25:99:.:.:1071,0:.:0,1,24,0 0|1:17,10:27:99:0|1:1244599_G_A:333,0,572:1244599:13,4,9,1 +chrX 1245112 . CAT C 1879.97 . AC=1;AF=0.333;AN=3;AS_AltDP=65;AS_QD=29.08;BaseQRankSum=1.987;DP=100;ExcessHet=0.0000;FS=0.000;MQ=58.69;MQRankSum=2.872;QD=29.08;ReadPosRankSum=-0.671;SOR=0.275;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,65:66:99:.:1919,0:0,1,15,17 0/0:.:45:41:30:0,41,720 +chrX 1245114 . T *,TGC 1788.97 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=30,31;AS_QD=0.00,27.87;BaseQRankSum=1.049;DP=97;ExcessHet=0.0000;FS=3.452;MQ=58.63;MQRankSum=2.686;QD=29.48;ReadPosRankSum=-0.671;SOR=0.595;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 2:1,30,31:62:9:.:1828,9,0:0,1,34,27 0/0:.:45:41:30:0,41,720,41,720,720 +chrX 1245456 . A G 1496 . AC=1;AF=0.333;AN=3;AS_AltDP=51;AS_QD=29.92;DP=82;ExcessHet=0.0000;FS=0.000;MQ=59.05;QD=29.92;SOR=0.900;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,51:51:99:.:1526,0:0,0,28,23 0/0:.:45:41:30:0,41,720 +chrX 1245563 . G T 36 . AC=1;AF=0.333;AN=3;AS_AltDP=10;AS_QD=1.78;BaseQRankSum=0.614;DP=80;ExcessHet=0.0000;FS=20.230;MQ=57.00;MQRankSum=-3.069;QD=1.78;ReadPosRankSum=0.394;SOR=2.219;VarDP=37 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:36:99:36:0,616 0/1:27,10:37:66:.:66,0,660:8,19,8,2 +chrX 1245700 . G C 102 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=2.69;BaseQRankSum=-0.679;DP=85;ExcessHet=0.0000;FS=1.101;MQ=60.00;MQRankSum=0;QD=2.69;ReadPosRankSum=2.081;SOR=0.623;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 1:22,27:49:99:.:132,0:12,10,13,14 0/0:.:38:36:36:0,36,853 +chrX 1245746 . A T 89 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=2.59;BaseQRankSum=-0.624;DP=84;ExcessHet=0.0000;FS=1.156;MQ=60.00;MQRankSum=0;QD=2.59;ReadPosRankSum=-2.427;SOR=1.022;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 1:21,25:46:99:.:119,0:10,11,10,15 0/0:.:38:36:36:0,36,853 +chrX 1246225 . G A 517 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=14.03;BaseQRankSum=1.556;DP=77;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.03;ReadPosRankSum=-0.533;SOR=0.749;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 1:12,27:39:99:.:547,0:8,4,18,9 0/0:.:38:36:36:0,36,853 +chrX 1246240 . C T 1562 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=32.36;DP=76;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=41.89;SOR=1.863;VarDP=38 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,38:38:99:.:1592,0:0,0,27,11 0/0:.:38:36:36:0,36,853 +chrX 1246245 . CAAA C,CAAAAAA 522.97 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=13,18;AS_QD=13.00,31.22;DP=107;ExcessHet=0.0000;FS=0.000;MQ=59.08;QD=18.13;SOR=1.839;VarDP=31 GT:AD:DP:GQ:MIN_DP:PL:SB 2:0,13,18:31:99:.:562,393,0:0,0,22,9 0/0:.:41:0:41:0,0,928,0,928,928 +chrX 1246344 . G A 2344 . AC=1;AF=0.333;AN=3;AS_AltDP=53;AS_QD=33.60;DP=115;ExcessHet=0.0000;FS=0.000;MQ=59.49;QD=44.79;SOR=0.808;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,53:53:99:.:2374,0:0,0,25,28 0/0:.:60:26:57:0,26,1150 +chrX 1246345 . T G 2378 . AC=1;AF=0.333;AN=3;AS_AltDP=55;AS_QD=32.13;DP=115;ExcessHet=0.0000;FS=0.000;MQ=59.49;QD=43.78;SOR=0.884;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,55:55:99:.:2408,0:0,0,25,30 0/0:.:60:26:57:0,26,1150 +chrX 1246351 . G A 263 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=5.05;BaseQRankSum=1.343;DP=116;ExcessHet=0.0000;FS=3.708;MQ=59.49;MQRankSum=2.119;QD=5.05;ReadPosRankSum=0.126;SOR=0.330;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 1:24,34:58:99:.:293,0:9,15,17,17 0/0:.:60:26:57:0,26,1150 +chrX 1246559 . C T 1907 . AC=1;AF=0.333;AN=3;AS_AltDP=56;AS_QD=34.59;DP=117;ExcessHet=0.0000;FS=0.000;MQ=43.83;QD=34.59;SOR=1.101;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,56:56:99:.:1937,0:0,0,33,23 0/0:.:60:26:57:0,26,1150 +chrX 1246655 . A G 1800 . AC=1;AF=0.333;AN=3;AS_AltDP=57;AS_QD=31.55;BaseQRankSum=-0.41;DP=117;ExcessHet=0.0000;FS=0.000;MQ=55.15;MQRankSum=-0.646;QD=31.55;ReadPosRankSum=1.285;SOR=0.301;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,57:58:99:.:1830,0:1,0,31,26 0/0:.:60:26:57:0,26,1150 +chrX 1246851 . A G 1448 . AC=1;AF=0.333;AN=3;AS_AltDP=48;AS_QD=30.79;DP=106;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.79;SOR=0.963;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,48:48:99:.:1478,0:0,0,21,27 0/0:.:60:26:57:0,26,1150 +chrX 1247193 . T TAA 1390.97 . AC=1;AF=0.333;AN=3;AS_AltDP=44;AS_QD=32.50;DP=87;ExcessHet=0.0000;FS=0.000;MQ=59.68;QD=32.50;SOR=1.105;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,44:44:99:.:1430,0:0,0,26,18 0/0:.:34:0:34:0,0,844 +chrX 1247347 . A G 2550 . AC=1;AF=0.333;AN=3;AS_AltDP=66;AS_QD=35.65;DP=91;ExcessHet=0.0000;FS=0.000;MQ=59.33;QD=39.09;SOR=0.957;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,66:66:99:.:2580,0:0,0,29,37 0/0:.:43:31:23:0,31,650 +chrX 1247351 . G A 228 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=3.91;BaseQRankSum=0.681;DP=91;ExcessHet=0.0000;FS=2.075;MQ=59.33;MQRankSum=-1.668;QD=3.91;ReadPosRankSum=1.202;SOR=1.035;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 1:29,37:66:99:.:258,0:14,15,15,22 0/0:.:43:31:23:0,31,650 +chrX 1247440 . CAA C 1399.97 . AC=1;AF=0.333;AN=3;AS_AltDP=43;AS_QD=33.47;DP=92;ExcessHet=0.0000;FS=0.000;MQ=59.42;QD=33.47;SOR=0.941;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,43:43:99:.:1439,0:0,0,19,24 0/0:.:43:31:23:0,31,650 +chrX 1247882 . GGAGAGA G,GGAGAGAGA 725.97 . AC=1,2;AF=0.333,0.667;AN=3;AS_AltDP=11,19;AS_QD=30.64,32.79;DP=66;ExcessHet=0.0000;FS=0.000;MQ=59.19;QD=25.50;SOR=0.826;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,11,6:17:99:337,0,142:0,0,6,11 2/2:0,0,13:13:39:428,428,429,39,39,0:0,0,8,5 +chrX 1248455 . C CGAGAG 2937.97 . AC=3;AF=1.00;AN=3;AS_AltDP=68;AS_QD=29.95;DP=85;ExcessHet=0.0000;FS=0.000;MQ=59.42;QD=43.78;SOR=1.179;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,37:37:99:1617,0:0,0,23,14 1/1:0,31:31:93:1360,93,0:0,0,18,13 +chrX 1249129 . C T 2267 . AC=1;AF=0.333;AN=3;AS_AltDP=54;AS_QD=30.07;DP=96;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=42.54;SOR=1.220;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,54:54:99:.:2297,0:0,0,33,21 0/0:.:50:37:38:0,37,1132 +chrX 1249141 . A C,AC 292 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=7,13;AS_QD=4.25,12.38;BaseQRankSum=0.062;DP=93;ExcessHet=0.0000;FS=3.176;MQ=60.00;MQRankSum=0;QD=9.76;ReadPosRankSum=1.235;SOR=0.634;VarDP=33 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:51:99:51:0,1499,1499 0/2:13,7,13:33:99:.:322,237,831,0,247,332:8,5,9,11 +chrX 1249144 . C G 2498 . AC=1;AF=0.333;AN=3;AS_AltDP=58;AS_QD=26.81;DP=107;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.59;SOR=1.493;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,58:58:99:.:2528,0:0,0,38,20 0/0:.:48:99:48:0,105,1575 +chrX 1249151 . CCA C 2390.97 . AC=1;AF=0.333;AN=3;AS_AltDP=54;AS_QD=36.76;DP=103;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=45.00;SOR=1.835;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,54:54:99:.:2430,0:0,0,38,16 0/0:.:48:99:48:0,105,1575 +chrX 1249175 . C T 2169 . AC=1;AF=0.333;AN=3;AS_AltDP=50;AS_QD=28.37;DP=104;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.98;SOR=1.390;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,50:50:99:.:2199,0:0,0,32,18 0/0:.:53:53:53:0,53,972 +chrX 1249914 . T G 1989 . AC=1;AF=0.333;AN=3;AS_AltDP=64;AS_QD=31.55;DP=119;ExcessHet=0.0000;FS=0.000;MQ=59.93;QD=31.55;SOR=0.822;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,64:64:99:.:2019,0:0,0,30,34 0/0:.:53:53:53:0,53,972 +chrX 1250510 . CTAGATAGATAGATAGATAGA CTAGATAGATAGATAGA,C 3142.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=60,17;AS_QD=32.63,23.83;BaseQRankSum=2.202;DP=122;ExcessHet=0.0000;FS=4.007;MQ=59.74;MQRankSum=0;QD=40.79;ReadPosRankSum=1.371;SOR=0.974;VarDP=78 GT:AD:DP:GQ:PL:SB 1:1,42,0:43:99:1815,0,1830:0,1,30,12 1/2:0,18,17:35:99:1367,637,582,734,0,962:0,0,17,18 +chrX 1251071 . T TGATA 1928.97 . AC=1;AF=0.333;AN=3;AS_AltDP=45;AS_QD=31.28;DP=65;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.73;SOR=0.829;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,45:45:99:.:1968,0:0,0,24,21 0/0:.:52:30:18:0,30,450 +chrX 1251132 . A ATATC 1729.97 . AC=1;AF=0.333;AN=3;AS_AltDP=40;AS_QD=36.40;DP=60;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.23;SOR=1.022;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,40:40:99:.:1769,0:0,0,23,17 0/0:.:52:30:18:0,30,450 +chrX 1251392 . C T 2301 . AC=1;AF=0.333;AN=3;AS_AltDP=52;AS_QD=28.34;DP=70;ExcessHet=0.0000;FS=0.000;MQ=59.76;QD=44.83;SOR=0.853;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,52:52:99:.:2331,0:0,0,24,28 0/0:.:52:30:18:0,30,450 +chrX 1251399 . G A 2301 . AC=1;AF=0.333;AN=3;AS_AltDP=52;AS_QD=30.50;DP=70;ExcessHet=0.0000;FS=0.000;MQ=59.76;QD=44.83;SOR=0.941;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,52:52:99:.:2331,0:0,0,23,29 0/0:.:52:30:18:0,30,450 +chrX 1251429 . G A 2265 . AC=1;AF=0.333;AN=3;AS_AltDP=51;AS_QD=36.84;DP=69;ExcessHet=0.0000;FS=0.000;MQ=59.75;QD=45.00;SOR=0.813;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,51:51:99:.:2295,0:0,0,24,27 0/0:.:52:30:18:0,30,450 +chrX 1251434 . T A 2085 . AC=1;AF=0.333;AN=3;AS_AltDP=47;AS_QD=32.47;DP=65;ExcessHet=0.0000;FS=0.000;MQ=59.73;QD=45.00;SOR=0.823;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,47:47:99:.:2115,0:0,0,25,22 0/0:.:52:30:18:0,30,450 +chrX 1251480 . TATGGGTATATCCAC T 2156.97 . AC=1;AF=0.333;AN=3;AS_AltDP=49;AS_QD=31.70;DP=67;ExcessHet=0.0000;FS=0.000;MQ=59.74;QD=44.82;SOR=1.007;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,49:49:99:.:2196,0:0,0,28,21 0/0:.:52:30:18:0,30,450 +chrX 1251499 . ATATACCCATATGGGTATATCCACATAGATATACCCATATGGGTATATCCACATAGATATACCCATATGGG A 2061.97 . AC=1;AF=0.333;AN=3;AS_AltDP=47;AS_QD=31.63;DP=65;ExcessHet=0.0000;FS=0.000;MQ=59.75;QD=44.70;SOR=1.022;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,47:47:99:.:2101,0:0,0,27,20 0/0:.:16:30:14:0,30,442 +chrX 1251597 . A G 382 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=9.36;BaseQRankSum=-1.441;DP=108;ExcessHet=0.0000;FS=2.622;MQ=58.57;MQRankSum=-2.103;QD=9.36;ReadPosRankSum=-0.824;SOR=1.179;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,1463 0/1:26,18:44:99:.:412,0,741:13,13,7,11 +chrX 1251839 . T TGATA 449.97 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=18.81;BaseQRankSum=-1.113;DP=100;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=18.81;ReadPosRankSum=-0.205;SOR=0.458;VarDP=26 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,1463 0/1:13,13:26:99:.:489,0,507:8,5,7,6 +chrX 1251870 . TAGATAGATAGAC T 95.97 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=3.00;BaseQRankSum=2.801;DP=124;ExcessHet=0.0000;FS=1.150;MQ=59.81;MQRankSum=-0.891;QD=3.00;ReadPosRankSum=0.091;SOR=0.922;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 1:21,24:45:99:.:135,0:9,12,9,15 0/0:.:59:46:59:0,46,1274 +chrX 1252085 . A G 1657 . AC=1;AF=0.333;AN=3;AS_AltDP=50;AS_QD=33.74;DP=111;ExcessHet=0.0000;FS=0.000;MQ=59.82;QD=33.74;SOR=0.859;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,50:50:99:.:1687,0:0,0,23,27 0/0:.:59:46:59:0,46,1274 +chrX 1252255 . T C 1890 . AC=1;AF=0.333;AN=3;AS_AltDP=57;AS_QD=33.68;DP=119;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.68;SOR=1.342;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,57:57:99:.:1920,0:0,0,36,21 0/0:.:59:46:59:0,46,1274 +chrX 1253260 . G A 1819 . AC=1;AF=0.333;AN=3;AS_AltDP=60;AS_QD=30.31;BaseQRankSum=-0.664;DP=120;ExcessHet=0.0000;FS=3.874;MQ=58.99;MQRankSum=3.166;QD=30.31;ReadPosRankSum=1.278;SOR=0.892;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,60:61:99:.:1849,0:1,0,24,36 0/0:.:59:46:59:0,46,1274 +chrX 1254129 . G A 1796 . AC=1;AF=0.333;AN=3;AS_AltDP=56;AS_QD=32.04;BaseQRankSum=-0.32;DP=119;ExcessHet=0.0000;FS=3.087;MQ=59.86;MQRankSum=0;QD=32.04;ReadPosRankSum=-0.486;SOR=0.335;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,56:57:99:.:1826,0:1,0,27,29 0/0:.:59:46:59:0,46,1274 +chrX 1254462 . A G 1860 . AC=1;AF=0.333;AN=3;AS_AltDP=61;AS_QD=30.48;BaseQRankSum=-0.524;DP=125;ExcessHet=0.0000;FS=0.000;MQ=59.77;MQRankSum=0;QD=30.48;ReadPosRankSum=-1.622;SOR=0.264;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,61:62:99:.:1890,0:0,1,29,32 0/0:.:59:46:59:0,46,1274 +chrX 1255606 . G T 1547 . AC=1;AF=0.333;AN=3;AS_AltDP=48;AS_QD=32.85;DP=109;ExcessHet=0.0000;FS=0.000;MQ=59.26;QD=32.85;SOR=0.776;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,48:48:99:.:1577,0:0,0,23,25 0/0:.:59:46:59:0,46,1274 +chrX 1256385 . T C 1715 . AC=1;AF=0.333;AN=3;AS_AltDP=55;AS_QD=31.73;DP=117;ExcessHet=0.0000;FS=0.000;MQ=59.02;QD=31.73;SOR=0.804;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,55:55:99:.:1745,0:0,0,29,26 0/0:.:59:46:59:0,46,1274 +chrX 1256887 . A G 1293 . AC=1;AF=0.333;AN=3;AS_AltDP=44;AS_QD=30.07;DP=99;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.07;SOR=0.693;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,44:44:99:.:1323,0:0,0,22,22 0/0:.:53:54:53:0,54,1138 +chrX 1257004 . T C 1833 . AC=1;AF=0.333;AN=3;AS_AltDP=59;AS_QD=31.58;DP=113;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.58;SOR=0.871;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,59:59:99:.:1863,0:0,0,27,32 0/0:.:53:54:53:0,54,1138 +chrX 1258071 . A G 2568 . AC=2;AF=0.667;AN=3;AS_AltDP=86;AS_QD=23.41;BaseQRankSum=0.65;DP=117;ExcessHet=0.0000;FS=0.000;MQ=58.99;MQRankSum=-2.001;QD=23.41;ReadPosRankSum=1.329;SOR=0.746;VarDP=111 GT:AD:DP:GQ:PL:SB 1:0,60:60:99:1916,0:0,0,36,24 0/1:25,26:51:99:682,0,590:14,11,13,13 +chrX 1258132 . T G 880 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=17.84;BaseQRankSum=0.565;DP=107;ExcessHet=0.0000;FS=2.418;MQ=57.89;MQRankSum=-2.52;QD=17.84;ReadPosRankSum=1.266;SOR=1.172;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:22:55:0,22 0/1:27,24:51:99:.:910,0,1023:13,14,9,15 +chrX 1258147 . CGGGG C 874.97 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=16.62;BaseQRankSum=1.926;DP=110;ExcessHet=0.0000;FS=1.049;MQ=57.09;MQRankSum=-2.346;QD=16.62;ReadPosRankSum=1.095;SOR=0.973;VarDP=55 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:56:22:55:.:.:0,22 0|1:31,24:55:99:.:0|1:1258147_CGGGG_C:914,0,1229:1258147:15,16,10,14 +chrX 1258151 . G GACAA 832.97 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=16.15;BaseQRankSum=-2.259;DP=109;ExcessHet=0.0000;FS=1.040;MQ=57.03;MQRankSum=-2.438;QD=16.15;ReadPosRankSum=1.409;SOR=0.890;VarDP=54 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:56:22:55:.:.:0,22 0|1:31,23:54:99:.:0|1:1258147_CGGGG_C:872,0,1232:1258147:15,16,10,13 +chrX 1258154 . C A 842 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=16.15;BaseQRankSum=2.365;DP=109;ExcessHet=0.0000;FS=1.040;MQ=57.03;MQRankSum=-2.438;QD=16.15;ReadPosRankSum=1.328;SOR=0.890;VarDP=54 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:56:22:55:.:.:0,22 0|1:31,23:54:99:.:0|1:1258147_CGGGG_C:872,0,1232:1258147:15,16,10,13 +chrX 1258190 . G A 757 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=13.12;BaseQRankSum=0.221;DP=119;ExcessHet=0.0000;FS=0.000;MQ=57.93;MQRankSum=-2.454;QD=13.12;ReadPosRankSum=-0.34;SOR=0.673;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:22:55:0,22 0/1:29,31:60:99:.:787,0,681:12,17,13,18 +chrX 1258197 . T G 2172 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=38.06;DP=115;ExcessHet=0.0000;FS=0.000;MQ=57.79;QD=36.70;SOR=1.071;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:22:55:0,22 1/1:0,60:60:99:.:2202,179,0:0,0,25,35 +chrX 1258264 . A G 698 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=16.93;BaseQRankSum=-1.523;DP=98;ExcessHet=0.0000;FS=1.171;MQ=57.58;MQRankSum=-2.771;QD=16.93;ReadPosRankSum=-0.202;SOR=0.481;VarDP=43 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:56:22:55:.:.:0,22 0|1:23,20:43:99:.:0|1:1258264_A_G:728,0,883:1258264:10,13,10,10 +chrX 1258276 . G A 635 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=16.22;BaseQRankSum=-0.527;DP=97;ExcessHet=0.0000;FS=2.709;MQ=58.75;MQRankSum=-1.978;QD=16.22;ReadPosRankSum=-0.079;SOR=0.747;VarDP=41 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:56:22:55:.:.:0,22 0|1:23,18:41:99:.:0|1:1258264_A_G:665,0,889:1258264:10,13,10,8 +chrX 1258329 . CAA C 149.97 . AC=1;AF=0.333;AN=3;AS_AltDP=8;AS_QD=7.56;BaseQRankSum=0.457;DP=96;ExcessHet=0.0000;FS=12.418;MQ=60.00;MQRankSum=0;QD=7.56;ReadPosRankSum=-0.239;SOR=3.781;VarDP=25 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:22:55:0,22 0/1:17,8:25:99:.:189,0,436:10,7,8,0 +chrX 1259030 . T C 1457 . AC=2;AF=0.667;AN=3;AS_AltDP=49;AS_QD=30.35;DP=107;ExcessHet=0.0000;FS=0.000;MQ=59.16;QD=30.35;SOR=1.112;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:22:55:0,22 1/1:0,49:49:99:.:1487,146,0:0,0,29,20 +chrX 1259365 . C CA 1315.97 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=26.57;DP=123;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=26.57;SOR=0.813;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:22:55:0,22 1/1:0,51:51:99:.:1355,153,0:0,0,27,24 +chrX 1259468 . T C 1087 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=15.96;BaseQRankSum=0.7;DP=125;ExcessHet=0.0000;FS=0.000;MQ=59.70;MQRankSum=-1.061;QD=15.96;ReadPosRankSum=1.693;SOR=0.770;VarDP=70 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:56:22:55:.:.:0,22 0|1:38,32:70:99:.:0|1:1259468_T_C:1117,0,1386:1259468:15,23,12,20 +chrX 1259489 . C T 1241 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=18.16;BaseQRankSum=-1.691;DP=125;ExcessHet=0.0000;FS=2.012;MQ=59.70;MQRankSum=-0.916;QD=18.16;ReadPosRankSum=-0.117;SOR=0.460;VarDP=70 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:56:22:55:.:.:0,22 0|1:33,37:70:99:.:0|1:1259468_T_C:1271,0,1233:1259468:12,21,16,21 +chrX 1259962 . G A 698 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=11.56;BaseQRankSum=0.12;DP=119;ExcessHet=0.0000;FS=0.961;MQ=59.42;MQRankSum=0.955;QD=11.56;ReadPosRankSum=-0.069;SOR=0.906;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:22:55:0,22 0/1:34,29:63:99:.:728,0,882:17,17,13,16 +chrX 1260394 . C T 706 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=13.14;BaseQRankSum=0.627;DP=116;ExcessHet=0.0000;FS=3.850;MQ=59.54;MQRankSum=-1.402;QD=13.14;ReadPosRankSum=0.189;SOR=1.402;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:22:55:0,22 0/1:28,28:56:99:.:736,0,715:13,15,9,19 +chrX 1260665 . T C 1163 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=10.37;BaseQRankSum=0.565;DP=117;ExcessHet=0.0000;FS=0.000;MQ=59.66;MQRankSum=1.521;QD=10.37;ReadPosRankSum=2.108;SOR=0.717;VarDP=115 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:29,32:61:99:.:.:147,0:.:14,15,15,17 0|1:26,28:54:99:0|1:1260665_T_C:1046,0,1007:1260665:12,14,13,15 +chrX 1260669 . G C 1192 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=10.63;BaseQRankSum=0.978;DP=116;ExcessHet=0.0000;FS=0.000;MQ=59.66;MQRankSum=1.571;QD=10.63;ReadPosRankSum=2.291;SOR=0.720;VarDP=115 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:28,33:61:99:.:.:225,0:.:14,14,16,17 0|1:28,26:54:99:0|1:1260665_T_C:997,0,1097:1260665:12,16,11,15 +chrX 1260673 . C T 1109 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=9.65;BaseQRankSum=1.474;DP=119;ExcessHet=0.0000;FS=0.000;MQ=59.67;MQRankSum=1.518;QD=9.65;ReadPosRankSum=2.381;SOR=0.693;VarDP=118 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:30,33:63:99:.:.:135,0:.:15,15,16,17 0|1:29,26:55:99:0|1:1260665_T_C:1004,0,1119:1260665:13,16,12,14 +chrX 1260698 . G C 937 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=17.91;BaseQRankSum=2.832;DP=116;ExcessHet=0.0000;FS=1.047;MQ=59.29;MQRankSum=-0.053;QD=17.91;ReadPosRankSum=0.16;SOR=0.741;VarDP=54 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:60:55:58:.:.:0,55 0|1:28,26:54:99:.:0|1:1260665_T_C:967,0,951:1260665:13,15,14,12 +chrX 1260946 . C T 617 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=13.20;BaseQRankSum=1.298;DP=110;ExcessHet=0.0000;FS=1.093;MQ=58.79;MQRankSum=-0.063;QD=13.20;ReadPosRankSum=-0.2;SOR=0.799;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:55:58:0,55 0/1:25,24:49:99:.:647,0,627:13,12,11,13 +chrX 1261186 . G A 745 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=15.20;BaseQRankSum=-1.174;DP=113;ExcessHet=0.0000;FS=1.070;MQ=59.02;MQRankSum=-1.216;QD=15.20;ReadPosRankSum=-0.466;SOR=0.906;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:55:58:0,55 0/1:22,29:51:99:.:775,0,581:11,11,13,16 +chrX 1261400 . G A 1680 . AC=2;AF=0.667;AN=3;AS_AltDP=78;AS_QD=14.37;BaseQRankSum=-0.099;DP=124;ExcessHet=0.0000;FS=9.262;MQ=60.00;MQRankSum=0;QD=14.37;ReadPosRankSum=0.38;SOR=1.262;VarDP=119 GT:AD:DP:GQ:PL:SB 1:21,40:61:99:613,0:10,11,26,14 0/1:20,38:58:99:1097,0,486:9,11,23,15 +chrX 1261599 . C G 690 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=16.74;BaseQRankSum=1.767;DP=99;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=16.74;ReadPosRankSum=0.172;SOR=0.609;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:48:55:0,48 0/1:18,25:43:99:.:720,0,432:6,12,9,16 +chrX 1261641 . TTTTTC T 1181.97 . AC=2;AF=0.667;AN=3;AS_AltDP=49;AS_QD=14.36;BaseQRankSum=-0.023;DP=104;ExcessHet=0.0000;FS=0.000;MQ=58.57;MQRankSum=-0.611;QD=14.36;ReadPosRankSum=1.112;SOR=0.616;VarDP=85 GT:AD:DP:GQ:PL:SB 1:18,25:43:99:320,0:5,13,8,17 0/1:18,24:42:99:901,0,651:6,12,8,16 +chrX 1261678 . TTTC T 1125.97 . AC=2;AF=0.667;AN=3;AS_AltDP=48;AS_QD=13.87;BaseQRankSum=-1.273;DP=90;ExcessHet=0.0000;FS=0.918;MQ=57.83;MQRankSum=-1.051;QD=13.87;ReadPosRankSum=1.209;SOR=0.830;VarDP=84 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:16,25:41:99:.:.:333,0:.:6,10,8,10 0|1:20,23:43:99:0|1:1261678_TTTC_T:832,0,737:1261678:11,8,6,7 +chrX 1261689 . C T 249 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=8.45;BaseQRankSum=-1.182;DP=97;ExcessHet=0.0000;FS=3.261;MQ=57.98;MQRankSum=-2.501;QD=8.45;ReadPosRankSum=0.621;SOR=0.490;VarDP=33 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:49:53:.:.:0,49 0|1:20,13:33:99:.:0|1:1261678_TTTC_T:279,0,762:1261678:13,7,6,7 +chrX 1261697 . TTTTTTTTC T 233.97 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=7.80;BaseQRankSum=-2.021;DP=98;ExcessHet=0.0000;FS=5.284;MQ=58.03;MQRankSum=-2.568;QD=7.80;ReadPosRankSum=0.532;SOR=0.464;VarDP=35 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:49:53:.:.:0,49 0|1:22,13:35:99:.:0|1:1261678_TTTC_T:273,0,816:1261678:14,7,6,7 +chrX 1262049 . T C 667 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=15.84;BaseQRankSum=-0.543;DP=99;ExcessHet=0.0000;FS=1.192;MQ=60.00;MQRankSum=0;QD=15.84;ReadPosRankSum=0.398;SOR=0.474;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:49:53:0,49 0/1:17,27:44:99:.:697,0,418:7,10,13,14 +chrX 1262130 . C G 529 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=11.89;BaseQRankSum=-0.259;DP=103;ExcessHet=0.0000;FS=2.500;MQ=60.00;MQRankSum=0;QD=11.89;ReadPosRankSum=0.417;SOR=1.091;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:49:53:0,49 0/1:26,21:47:99:.:559,0,732:15,11,14,7 +chrX 1262191 . C A 738 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=15.36;BaseQRankSum=1.487;DP=104;ExcessHet=0.0000;FS=4.290;MQ=55.83;MQRankSum=-0.637;QD=15.36;ReadPosRankSum=0.088;SOR=0.265;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:49:53:0,49 0/1:23,27:50:99:.:768,0,584:17,6,16,11 +chrX 1262274 . A G 2168 . AC=3;AF=1.00;AN=3;AS_AltDP=82;AS_QD=20.54;BaseQRankSum=-0.93;DP=111;ExcessHet=0.0000;FS=5.977;MQ=51.66;MQRankSum=-4.166;QD=20.54;ReadPosRankSum=-0.918;SOR=0.956;VarDP=107 GT:AD:DP:GQ:PL:SB 1:25,29:54:99:211,0:11,14,19,10 1/1:0,53:53:99:1987,159,0:0,0,29,24 +chrX 1262296 . C G 1459 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=13.54;BaseQRankSum=0.402;DP=111;ExcessHet=0.0000;FS=7.462;MQ=52.13;MQRankSum=-3.019;QD=13.54;ReadPosRankSum=-0.322;SOR=1.109;VarDP=110 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:24,35:59:99:.:.:475,0:.:12,12,19,16 0|1:23,28:51:99:0|1:1262296_C_G:1014,0,800:1262296:10,13,19,9 +chrX 1262303 . A G 4286 . AC=3;AF=1.00;AN=3;AS_AltDP=110;AS_QD=30.98;DP=112;ExcessHet=0.0000;FS=0.000;MQ=52.27;QD=39.24;SOR=0.846;VarDP=110 GT:AD:DP:GQ:PL:SB 1:0,60:60:99:2373,0:0,0,30,30 1/1:0,50:50:99:1943,150,0:0,0,29,21 +chrX 1262315 . G A 1112 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=10.48;BaseQRankSum=1.499;DP=110;ExcessHet=0.0000;FS=5.976;MQ=53.80;MQRankSum=-2.59;QD=10.48;ReadPosRankSum=1.475;SOR=0.953;VarDP=109 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:28,32:60:99:.:.:226,0:.:12,16,15,17 0|1:24,25:49:99:0|1:1262296_C_G:916,0,829:1262296:12,12,18,7 +chrX 1262402 . A C 774 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=7.31;BaseQRankSum=0.417;DP=115;ExcessHet=0.0000;FS=1.547;MQ=59.40;MQRankSum=-1.235;QD=7.31;ReadPosRankSum=0.11;SOR=0.907;VarDP=110 GT:AD:DP:GQ:PL:SB 1:28,36:64:99:252,0:12,16,14,22 0/1:25,21:46:99:552,0,671:12,13,9,12 +chrX 1262723 . G A 1307 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=17.14;BaseQRankSum=2.264;DP=104;ExcessHet=0.0000;FS=19.253;MQ=57.98;MQRankSum=3.608;QD=17.14;ReadPosRankSum=-0.849;SOR=0.420;VarDP=78 GT:AD:DP:GQ:PL:SB 1:14,33:47:99:696,0:3,11,19,14 0/1:9,22:31:99:641,0,190:2,7,11,11 +chrX 1262937 . C T 1198 . AC=2;AF=0.667;AN=3;AS_AltDP=64;AS_QD=11.58;BaseQRankSum=0.332;DP=114;ExcessHet=0.0000;FS=1.628;MQ=58.48;MQRankSum=0.611;QD=11.58;ReadPosRankSum=1.992;SOR=0.498;VarDP=106 GT:AD:DP:GQ:PL:SB 1:18,31:49:99:362,0:14,4,16,15 0/1:24,33:57:99:866,0,572:12,12,20,13 +chrX 1262988 . TA T 467.97 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=11.79;BaseQRankSum=-0.377;DP=136;ExcessHet=0.0000;FS=1.192;MQ=58.75;MQRankSum=0;QD=11.79;ReadPosRankSum=-0.428;SOR=0.446;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:79:99:79:0,343 0/1:19,24:43:99:.:507,0,376:11,8,12,12 +chrX 1263241 . A C 3840 . AC=2;AF=0.667;AN=3;AS_AltDP=91;AS_QD=31.21;BaseQRankSum=-1.719;DP=127;ExcessHet=0.0000;FS=5.006;MQ=59.96;MQRankSum=0;QD=31.21;ReadPosRankSum=0.283;SOR=0.841;VarDP=124 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,65:65:99:.:.:2889,0:.:0,0,30,35 0|1:33,26:59:99:0|1:1263241_A_C:981,0,1306:1263241:18,15,10,16 +chrX 1263242 . A C 3840 . AC=2;AF=0.667;AN=3;AS_AltDP=91;AS_QD=31.21;BaseQRankSum=-1.741;DP=128;ExcessHet=0.0000;FS=5.006;MQ=59.96;MQRankSum=0;QD=31.21;ReadPosRankSum=0.305;SOR=0.841;VarDP=124 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,65:65:99:.:.:2889,0:.:0,0,30,35 0|1:33,26:59:99:0|1:1263241_A_C:981,0,1306:1263241:18,15,10,16 +chrX 1263352 . G A 3866 . AC=3;AF=1.00;AN=3;AS_AltDP=115;AS_QD=33.59;BaseQRankSum=4.069;DP=120;ExcessHet=0.0000;FS=3.086;MQ=59.92;MQRankSum=-0.091;QD=33.59;ReadPosRankSum=0.615;SOR=0.306;VarDP=116 GT:AD:DP:GQ:PL:SB 1:1,61:62:99:2080,0:0,1,29,32 1/1:0,54:54:99:1816,162,0:0,0,30,24 +chrX 1263391 . T C 2892 . AC=2;AF=0.667;AN=3;AS_AltDP=96;AS_QD=23.01;BaseQRankSum=0.186;DP=129;ExcessHet=0.0000;FS=2.697;MQ=59.80;MQRankSum=0.934;QD=23.01;ReadPosRankSum=1.855;SOR=0.461;VarDP=127 GT:AD:DP:GQ:PL:SB 1:0,71:71:99:2291,0:0,0,36,35 0/1:31,25:56:99:631,0,850:19,12,16,9 +chrX 1263485 . T C 1232 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=17.05;BaseQRankSum=0.257;DP=147;ExcessHet=0.0000;FS=0.888;MQ=59.18;MQRankSum=-0.208;QD=17.05;ReadPosRankSum=0.223;SOR=0.549;VarDP=74 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:72:99:72:.:.:0,1800 0|1:41,33:74:99:.:0|1:1263485_T_C:1262,0,1606:1263485:17,24,15,18 +chrX 1263494 . C G 1310 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=17.18;BaseQRankSum=0.245;DP=150;ExcessHet=0.0000;FS=0.000;MQ=59.21;MQRankSum=-0.197;QD=17.18;ReadPosRankSum=0.578;SOR=0.634;VarDP=78 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:72:99:72:.:.:0,1800 0|1:43,35:78:99:.:0|1:1263485_T_C:1340,0,1684:1263485:19,24,16,19 +chrX 1263497 . A G 2831 . AC=2;AF=0.667;AN=3;AS_AltDP=77;AS_QD=33.35;DP=151;ExcessHet=0.0000;FS=0.000;MQ=59.22;QD=37.16;SOR=0.948;VarDP=77 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:72:99:72:.:.:0,1800 1|1:0,77:77:99:.:0|1:1263485_T_C:2861,231,0:1263485:0,0,34,43 +chrX 1263504 . C T 1397 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=17.84;BaseQRankSum=0.671;DP=154;ExcessHet=0.0000;FS=0.850;MQ=59.19;MQRankSum=-0.551;QD=17.84;ReadPosRankSum=0.29;SOR=0.534;VarDP=80 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:72:99:72:.:.:0,1800 0|1:42,38:80:99:.:0|1:1263485_T_C:1427,0,1610:1263485:18,24,18,20 +chrX 1263669 . C T 1026 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=16.25;BaseQRankSum=0.793;DP=138;ExcessHet=0.0000;FS=0.960;MQ=60.00;MQRankSum=0;QD=16.25;ReadPosRankSum=-0.706;SOR=0.507;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:72:99:72:0,1800 0/1:27,38:65:99:.:1056,0,658:15,12,19,19 +chrX 1263793 . T A 2881 . AC=1;AF=0.333;AN=3;AS_AltDP=65;AS_QD=29.05;DP=76;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.78;SOR=1.341;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,65:65:99:.:2911,0:0,0,24,41 0/0:.:18:21:10:0,21,315 +chrX 1263800 . A G 2965 . AC=1;AF=0.333;AN=3;AS_AltDP=68;AS_QD=29.24;DP=79;ExcessHet=0.0000;FS=0.000;MQ=59.68;QD=44.04;SOR=1.352;VarDP=68 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,68:68:99:.:2995,0:0,0,25,43 0/0:.:18:21:10:0,21,315 +chrX 1265049 . A G 1236 . AC=2;AF=0.667;AN=3;AS_AltDP=71;AS_QD=10.82;BaseQRankSum=1.372;DP=120;ExcessHet=0.0000;FS=0.712;MQ=60.00;MQRankSum=0;QD=10.82;ReadPosRankSum=1.307;SOR=0.808;VarDP=117 GT:AD:DP:GQ:PL:SB 1:29,32:61:99:149,0:14,15,9,23 0/1:17,39:56:99:1117,0,403:6,11,20,19 +chrX 1265563 . G A 415 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=14.83;BaseQRankSum=-1.263;DP=97;ExcessHet=0.0000;FS=3.155;MQ=54.04;MQRankSum=-1.851;QD=14.83;ReadPosRankSum=-0.544;SOR=0.518;VarDP=30 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,809 0/1:13,17:30:99:.:445,0,337:5,8,9,8 +chrX 1265626 . C T 76 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=3.03;BaseQRankSum=0;DP=85;ExcessHet=0.0000;FS=0.000;MQ=58.69;MQRankSum=-0.245;QD=3.03;ReadPosRankSum=0.381;SOR=0.922;VarDP=35 GT:AD:DP:GQ:MIN_DP:PL:SB 1:16,19:35:99:.:106,0:4,12,4,15 0/0:.:48:56:48:0,56,775 +chrX 1265774 . G T 783 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=14.52;BaseQRankSum=0.994;DP=133;ExcessHet=0.0000;FS=1.037;MQ=54.25;MQRankSum=-4.868;QD=14.52;ReadPosRankSum=0.427;SOR=0.957;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:76:99:76:0,279 0/1:26,30:56:99:.:813,0,640:14,12,18,12 +chrX 1266742 . A G 670 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=10.45;BaseQRankSum=-0.423;DP=136;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=10.45;ReadPosRankSum=-0.051;SOR=0.781;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:99:66:0,190 0/1:39,28:67:99:.:700,0,1073:20,19,15,13 +chrX 1266775 . C T 605 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=9.34;BaseQRankSum=2.138;DP=140;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=9.34;ReadPosRankSum=0.579;SOR=0.693;VarDP=68 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:99:66:0,190 0/1:43,25:68:99:.:635,0,1080:19,24,11,14 +chrX 1266882 . GGT G 453.97 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=12.64;BaseQRankSum=0.814;DP=137;ExcessHet=0.0000;FS=1.329;MQ=59.77;MQRankSum=0;QD=12.64;ReadPosRankSum=0.074;SOR=0.436;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:99:66:0,190 0/1:23,16:39:99:.:493,0,750:7,16,6,10 +chrX 1267524 . C T 622 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=6.39;BaseQRankSum=2.071;DP=106;ExcessHet=0.0000;FS=6.303;MQ=54.85;MQRankSum=1.376;QD=6.39;ReadPosRankSum=1.445;SOR=0.808;VarDP=102 GT:AD:DP:GQ:PL:SB 1:23,37:60:99:241,0:9,14,23,14 0/1:26,16:42:99:411,0,697:12,14,7,9 +chrX 1267868 . C T 874 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=8.22;BaseQRankSum=2.756;DP=115;ExcessHet=0.0000;FS=0.000;MQ=59.45;MQRankSum=-0.492;QD=8.22;ReadPosRankSum=2.181;SOR=0.765;VarDP=110 GT:AD:DP:GQ:PL:SB 1:27,28:55:99:165,0:16,11,13,15 0/1:27,28:55:99:739,0,693:11,16,14,14 +chrX 1267935 . C T 539 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=11.61;BaseQRankSum=0.219;DP=116;ExcessHet=0.0000;FS=1.101;MQ=58.03;MQRankSum=-0.843;QD=11.61;ReadPosRankSum=-0.65;SOR=0.957;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,115 0/1:25,24:49:99:.:569,0,608:13,12,14,10 +chrX 1268043 . C T 946 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=18.77;BaseQRankSum=1.097;DP=115;ExcessHet=0.0000;FS=1.111;MQ=53.22;MQRankSum=-0.654;QD=18.77;ReadPosRankSum=-1.044;SOR=0.996;VarDP=52 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:99:63:.:.:0,115 0|1:25,27:52:99:.:0|1:1268043_C_T:976,0,845:1268043:10,15,9,18 +chrX 1268066 . ATG A 751.97 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=17.20;BaseQRankSum=-0.739;DP=114;ExcessHet=0.0000;FS=2.512;MQ=50.24;MQRankSum=0.262;QD=17.20;ReadPosRankSum=1.707;SOR=1.127;VarDP=46 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:99:63:.:.:0,115 0|1:25,21:46:99:.:0|1:1268043_C_T:791,0,898:1268043:12,13,8,13 +chrX 1268129 . G A 559 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=13.70;BaseQRankSum=-0.315;DP=107;ExcessHet=0.0000;FS=2.623;MQ=49.57;MQRankSum=0.528;QD=13.70;ReadPosRankSum=-1.206;SOR=0.839;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,115 0/1:20,23:43:99:.:589,0,506:11,9,10,13 +chrX 1268463 . ATG A 2142.97 . AC=1;AF=0.333;AN=3;AS_AltDP=53;AS_QD=28.36;DP=95;ExcessHet=0.0000;FS=0.000;MQ=59.89;QD=41.17;SOR=0.730;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,53:53:99:.:2182,0:0,0,27,26 0/0:.:41:99:41:0,105,1210 +chrX 1268792 . C G 219 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=3.77;BaseQRankSum=-0.848;DP=116;ExcessHet=0.0000;FS=3.460;MQ=60.00;MQRankSum=0;QD=3.77;ReadPosRankSum=-0.84;SOR=0.345;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 1:29,37:66:99:.:249,0:10,19,17,20 0/0:.:46:25:46:0,25,1191 +chrX 1268954 . C G 2931 . AC=2;AF=0.667;AN=3;AS_AltDP=98;AS_QD=23.31;BaseQRankSum=0.755;DP=130;ExcessHet=0.0000;FS=2.787;MQ=60.00;MQRankSum=0;QD=23.31;ReadPosRankSum=-2.014;SOR=0.420;VarDP=127 GT:AD:DP:GQ:PL:SB 1:0,64:64:99:2028,0:0,0,30,34 0/1:29,34:63:99:933,0,719:17,12,19,15 +chrX 1269339 . G A 726 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=6.69;BaseQRankSum=0.794;DP=119;ExcessHet=0.0000;FS=8.771;MQ=59.76;MQRankSum=0.936;QD=6.69;ReadPosRankSum=0.59;SOR=0.989;VarDP=113 GT:AD:DP:GQ:PL:SB 1:27,28:55:87:87,0:12,15,13,15 0/1:32,26:58:99:669,0,903:21,11,9,17 +chrX 1269384 . A G 1019 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=9.12;BaseQRankSum=1.336;DP=119;ExcessHet=0.0000;FS=18.115;MQ=59.70;MQRankSum=0;QD=9.12;ReadPosRankSum=0.79;SOR=1.204;VarDP=115 GT:AD:DP:GQ:PL:SB 1:23,30:53:99:249,0:10,13,11,19 0/1:32,30:62:99:800,0,836:23,9,11,19 +chrX 1269413 . C G 661 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=12.34;BaseQRankSum=2.43;DP=120;ExcessHet=0.0000;FS=12.339;MQ=60.00;MQRankSum=0;QD=12.34;ReadPosRankSum=0.519;SOR=0.861;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:56:62:0,56 0/1:31,25:56:99:.:691,0,804:21,10,10,15 +chrX 1269509 . C G 2658 . AC=2;AF=0.667;AN=3;AS_AltDP=85;AS_QD=24.00;BaseQRankSum=-0.82;DP=113;ExcessHet=0.0000;FS=0.836;MQ=59.97;MQRankSum=0.904;QD=24.00;ReadPosRankSum=0.926;SOR=0.562;VarDP=112 GT:AD:DP:GQ:PL:SB 1:0,65:65:99:2174,0:0,0,29,36 0/1:27,20:47:99:514,0,767:11,16,9,11 +chrX 1269591 . C T 551 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=11.39;BaseQRankSum=0.12;DP=98;ExcessHet=0.0000;FS=7.920;MQ=59.36;MQRankSum=1.375;QD=11.39;ReadPosRankSum=-1.114;SOR=0.184;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:45:34:44:0,34 0/1:27,24:51:99:.:581,0,623:8,19,12,12 +chrX 1269630 . AG A 815.97 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=17.10;BaseQRankSum=-0.592;DP=97;ExcessHet=0.0000;FS=0.000;MQ=59.50;MQRankSum=-0.115;QD=17.10;ReadPosRankSum=-0.06;SOR=0.592;VarDP=50 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:45:34:44:.:.:0,34 0|1:27,23:50:99:.:0|1:1269630_AG_A:855,0,1022:1269630:11,16,10,13 +chrX 1269642 . A G 861 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=18.56;BaseQRankSum=-0.577;DP=93;ExcessHet=0.0000;FS=0.000;MQ=59.88;MQRankSum=-1.001;QD=18.56;ReadPosRankSum=-0.096;SOR=0.711;VarDP=48 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:45:49:45:.:.:0,49 0|1:25,23:48:99:.:0|1:1269630_AG_A:891,0,975:1269630:11,14,10,13 +chrX 1269646 . AGAGAT A 848.97 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=18.12;BaseQRankSum=-0.271;DP=95;ExcessHet=0.0000;FS=1.100;MQ=59.89;MQRankSum=-1.022;QD=18.12;ReadPosRankSum=1.165;SOR=0.963;VarDP=49 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:45:49:45:.:.:0,49 0|1:26,23:49:99:.:0|1:1269630_AG_A:888,0,1012:1269630:13,13,10,13 +chrX 1269649 . G A,* 903 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=25,0;AS_QD=34.56,0.00;DP=94;ExcessHet=0.0000;FS=0.000;MQ=58.75;QD=34.56;SOR=0.737;VarDP=27 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:2,25,0:27:99:.:.:933,0,946:.:0,0,12,10 0|2:26,0,23:49:99:0|1:1269630_AG_A:888,966,2047,0,1081,1012:1269630:13,13,10,13 +chrX 1269651 . T A,* 948 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=25,0;AS_QD=32.45,0.00;DP=94;ExcessHet=0.0000;FS=0.000;MQ=58.75;QD=37.62;SOR=0.737;VarDP=26 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,25,0:26:99:.:.:978,0,969:.:0,0,12,10 0|2:26,0,23:49:99:0|1:1269630_AG_A:888,966,2047,0,1081,1012:1269630:13,13,10,13 +chrX 1270168 . A C,T 2853 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=75,20;AS_QD=20.80,8.18;BaseQRankSum=1.275;DP=138;ExcessHet=0.0000;FS=2.462;MQ=60.00;MQRankSum=0;QD=21.36;ReadPosRankSum=1.812;SOR=0.973;VarDP=135 GT:AD:DP:GQ:PL:SB 1:0,75,0:75:99:2392,0,2392:0,0,27,48 0/2:40,0,20:60:99:491,610,1781,0,1171,1111:18,22,10,10 +chrX 1270243 . T TA 440.97 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=8.89;BaseQRankSum=0.408;DP=134;ExcessHet=0.0000;FS=6.042;MQ=60.00;MQRankSum=0;QD=8.89;ReadPosRankSum=-0.82;SOR=1.301;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:75:99:75:0,1800 0/1:37,17:54:99:.:480,0,1269:17,20,11,6 +chrX 1270357 . G T 3327 . AC=2;AF=0.667;AN=3;AS_AltDP=98;AS_QD=25.82;BaseQRankSum=-0.791;DP=136;ExcessHet=0.0000;FS=6.499;MQ=59.93;MQRankSum=-1.018;QD=25.82;ReadPosRankSum=0.637;SOR=0.625;VarDP=130 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,69:69:99:.:.:2236,0:.:0,0,39,30 0|1:32,29:61:99:0|1:1270357_G_T:1121,0,1245:1270357:13,19,14,15 +chrX 1270360 . C T 1094 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=18.73;BaseQRankSum=-0.434;DP=129;ExcessHet=0.0000;FS=0.994;MQ=59.84;MQRankSum=-1.001;QD=18.73;ReadPosRankSum=0.215;SOR=0.481;VarDP=60 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:68:99:68:.:.:0,1800 0|1:31,29:60:99:.:0|1:1270357_G_T:1124,0,1214:1270357:13,18,14,15 +chrX 1270364 . C T 1055 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=18.71;BaseQRankSum=-1.036;DP=128;ExcessHet=0.0000;FS=1.010;MQ=60.00;MQRankSum=0;QD=18.71;ReadPosRankSum=0.436;SOR=0.473;VarDP=58 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:68:99:68:.:.:0,1800 0|1:30,28:58:99:.:0|1:1270357_G_T:1085,0,1175:1270357:13,17,14,14 +chrX 1270447 . C T 757 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=13.12;BaseQRankSum=-0.253;DP=132;ExcessHet=0.0000;FS=0.960;MQ=60.00;MQRankSum=0;QD=13.12;ReadPosRankSum=-0.385;SOR=0.569;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:99:68:0,1800 0/1:29,31:60:99:.:787,0,723:16,13,16,15 +chrX 1270478 . A G 3351 . AC=2;AF=0.667;AN=3;AS_AltDP=88;AS_QD=28.65;BaseQRankSum=-0.381;DP=123;ExcessHet=0.0000;FS=1.722;MQ=60.00;MQRankSum=0;QD=28.65;ReadPosRankSum=0.534;SOR=0.473;VarDP=118 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,62:62:99:.:.:2401,0:.:0,0,32,30 0|1:30,26:56:99:0|1:1270478_A_G:980,0,1160:1270478:17,13,12,14 +chrX 1270485 . T G 74 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=1.63;BaseQRankSum=-0.267;DP=122;ExcessHet=0.0000;FS=2.100;MQ=60.00;MQRankSum=0;QD=1.63;ReadPosRankSum=-1.332;SOR=0.851;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 1:30,34:64:99:.:104,0:14,16,19,15 0/0:.:55:99:55:0,120,1800 +chrX 1270489 . C T 3279 . AC=2;AF=0.667;AN=3;AS_AltDP=87;AS_QD=27.81;BaseQRankSum=0.341;DP=124;ExcessHet=0.0000;FS=1.674;MQ=60.00;MQRankSum=0;QD=27.81;ReadPosRankSum=0.764;SOR=0.502;VarDP=119 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,63:63:99:.:.:2399,0:.:0,0,32,31 0|1:32,24:56:99:0|1:1270478_A_G:910,0,1218:1270478:18,14,12,12 +chrX 1270579 . T C 1825 . AC=2;AF=0.667;AN=3;AS_AltDP=65;AS_QD=19.53;BaseQRankSum=-2.117;DP=106;ExcessHet=0.0000;FS=15.788;MQ=60.00;MQRankSum=0;QD=19.53;ReadPosRankSum=-1.502;SOR=0.904;VarDP=95 GT:AD:DP:GQ:PL:SB 1:0,47:47:99:1503,0:0,0,19,28 0/1:30,18:48:99:352,0,845:20,10,7,11 +chrX 1270639 . C T 38 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=1.26;BaseQRankSum=1.675;DP=110;ExcessHet=0.0000;FS=2.386;MQ=60.00;MQRankSum=0;QD=1.26;ReadPosRankSum=0.311;SOR=1.219;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 1:27,27:54:68:.:68,0:12,15,9,18 0/0:.:48:88:48:0,88,1375 +chrX 1270642 . T C 121 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=2.75;BaseQRankSum=-0.049;DP=111;ExcessHet=0.0000;FS=5.541;MQ=60.00;MQRankSum=0;QD=2.75;ReadPosRankSum=0.152;SOR=1.461;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 1:26,29:55:99:.:151,0:12,14,9,20 0/0:.:48:88:48:0,88,1375 +chrX 1270685 . A G 2155 . AC=2;AF=0.667;AN=3;AS_AltDP=73;AS_QD=23.49;BaseQRankSum=-0.853;DP=108;ExcessHet=0.0000;FS=2.138;MQ=60.00;MQRankSum=0;QD=23.49;ReadPosRankSum=0.081;SOR=1.103;VarDP=93 GT:AD:DP:GQ:PL:SB 1:0,53:53:99:1650,0:0,0,24,29 0/1:20,20:40:99:535,0,555:10,10,6,14 +chrX 1270752 . T A 257 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=6.67;BaseQRankSum=1.318;DP=108;ExcessHet=0.0000;FS=3.154;MQ=60.00;MQRankSum=0;QD=6.67;ReadPosRankSum=-0.014;SOR=1.480;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:52:99:52:0,115 0/1:31,12:43:99:.:287,0,908:13,18,3,9 +chrX 1270857 . G T 1443 . AC=2;AF=0.667;AN=3;AS_AltDP=49;AS_QD=16.93;BaseQRankSum=1.313;DP=106;ExcessHet=0.0000;FS=0.000;MQ=58.58;MQRankSum=0;QD=16.93;ReadPosRankSum=0;SOR=0.749;VarDP=87 GT:AD:DP:GQ:PL:SB 1:0,44:44:99:1428,0:0,0,19,25 0/1:38,5:43:45:45,0,1058:16,22,1,4 +chrX 1270898 . G A 384 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=12.18;BaseQRankSum=3.127;DP=67;ExcessHet=0.0000;FS=1.445;MQ=56.72;MQRankSum=3.606;QD=12.18;ReadPosRankSum=-1.984;SOR=0.358;VarDP=34 GT:AD:DP:GQ:MIN_DP:PL:SB 1:12,22:34:99:.:414,0:4,8,10,12 0/0:.:35:39:27:0,39,829 +chrX 1271158 . C G 573 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=12.31;BaseQRankSum=-0.814;DP=111;ExcessHet=0.0000;FS=0.000;MQ=59.25;MQRankSum=-1.429;QD=12.31;ReadPosRankSum=0.37;SOR=0.641;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:58:99:58:0,296 0/1:25,24:49:99:.:603,0,682:18,7,17,7 +chrX 1271188 . C T 549 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=15.24;BaseQRankSum=1.792;DP=98;ExcessHet=0.0000;FS=1.342;MQ=59.01;MQRankSum=-1.555;QD=15.24;ReadPosRankSum=0.382;SOR=0.446;VarDP=38 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:58:99:58:.:.:0,296 0|1:21,17:38:99:.:0|1:1271188_C_T:579,0,810:1271188:15,6,11,6 +chrX 1271197 . G T 507 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=10.53;BaseQRankSum=-0.936;DP=87;ExcessHet=0.0000;FS=2.625;MQ=59.47;MQRankSum=0.784;QD=10.53;ReadPosRankSum=0.475;SOR=0.399;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 1:14,37:51:99:.:537,0:9,5,20,17 0/0:.:33:84:33:0,84,948 +chrX 1271210 . G T 366 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=12.00;BaseQRankSum=1.579;DP=73;ExcessHet=0.0000;FS=0.000;MQ=58.79;MQRankSum=-1.985;QD=12.00;ReadPosRankSum=0.537;SOR=0.495;VarDP=33 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:40:99:40:.:.:0,712 0|1:22,11:33:99:.:0|1:1271188_C_T:396,0,891:1271188:15,7,7,4 +chrX 1271213 . AG A 353.97 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=11.56;BaseQRankSum=1.377;DP=74;ExcessHet=0.0000;FS=0.000;MQ=58.83;MQRankSum=-2.031;QD=11.56;ReadPosRankSum=0.589;SOR=0.449;VarDP=34 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:40:99:40:.:.:0,712 0|1:23,11:34:99:.:0|1:1271188_C_T:393,0,933:1271188:16,7,7,4 +chrX 1271218 . C T 360 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=11.14;BaseQRankSum=2.049;DP=75;ExcessHet=0.0000;FS=0.000;MQ=58.37;MQRankSum=-1.317;QD=11.14;ReadPosRankSum=0.055;SOR=0.541;VarDP=35 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:40:99:40:.:.:0,712 0|1:24,11:35:99:.:0|1:1271188_C_T:390,0,975:1271188:16,8,7,4 +chrX 1271221 . G A 363 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=11.56;BaseQRankSum=1.119;DP=74;ExcessHet=0.0000;FS=0.000;MQ=58.33;MQRankSum=-1.272;QD=11.56;ReadPosRankSum=0.137;SOR=0.593;VarDP=34 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:40:99:40:.:.:0,712 0|1:23,11:34:99:.:0|1:1271188_C_T:393,0,933:1271188:15,8,7,4 +chrX 1271227 . T C 273 . AC=1;AF=0.333;AN=3;AS_AltDP=9;AS_QD=8.91;BaseQRankSum=1.493;DP=74;ExcessHet=0.0000;FS=0.000;MQ=58.33;MQRankSum=-1.586;QD=8.91;ReadPosRankSum=0.202;SOR=0.895;VarDP=34 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:40:99:40:.:.:0,712 0|1:25,9:34:99:.:0|1:1271188_C_T:303,0,1023:1271188:15,10,6,3 +chrX 1271228 . G A 273 . AC=1;AF=0.333;AN=3;AS_AltDP=9;AS_QD=8.91;BaseQRankSum=0;DP=74;ExcessHet=0.0000;FS=0.000;MQ=58.33;MQRankSum=-1.586;QD=8.91;ReadPosRankSum=-0.101;SOR=0.895;VarDP=34 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:40:99:40:.:.:0,712 0|1:25,9:34:99:.:0|1:1271188_C_T:303,0,1023:1271188:15,10,6,3 +chrX 1271234 . C T 270 . AC=1;AF=0.333;AN=3;AS_AltDP=9;AS_QD=8.57;BaseQRankSum=1.442;DP=75;ExcessHet=0.0000;FS=1.478;MQ=58.10;MQRankSum=-0.868;QD=8.57;ReadPosRankSum=-0.996;SOR=1.002;VarDP=35 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:40:99:40:.:.:0,712 0|1:26,9:35:99:.:0|1:1271188_C_T:300,0,1065:1271188:15,11,6,3 +chrX 1271244 . G A 267 . AC=1;AF=0.333;AN=3;AS_AltDP=9;AS_QD=8.25;BaseQRankSum=1.389;DP=76;ExcessHet=0.0000;FS=0.000;MQ=57.67;MQRankSum=-0.591;QD=8.25;ReadPosRankSum=-1.3;SOR=0.927;VarDP=36 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:40:99:40:.:.:0,712 0|1:27,9:36:99:.:0|1:1271188_C_T:297,0,1107:1271188:16,11,6,3 +chrX 1271250 . T C 144 . AC=1;AF=0.333;AN=3;AS_AltDP=6;AS_QD=5.44;BaseQRankSum=0.896;DP=72;ExcessHet=0.0000;FS=0.000;MQ=57.38;MQRankSum=-1.099;QD=5.44;ReadPosRankSum=-1.256;SOR=0.446;VarDP=32 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:40:99:40:.:.:0,712 0|1:26,6:32:99:.:0|1:1271188_C_T:174,0,1074:1271188:15,11,3,3 +chrX 1271272 . C A 111 . AC=1;AF=0.333;AN=3;AS_AltDP=5;AS_QD=5.04;BaseQRankSum=-0.052;DP=69;ExcessHet=0.0000;FS=0.000;MQ=57.10;MQRankSum=-1.212;QD=5.04;ReadPosRankSum=-2.37;SOR=0.741;VarDP=28 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:40:99:40:.:.:0,712 0|1:23,5:28:99:.:0|1:1271188_C_T:141,0,951:1271188:13,10,3,2 +chrX 1271332 . AT A 152.97 . AC=1;AF=0.333;AN=3;AS_AltDP=10;AS_QD=19.20;DP=46;ExcessHet=0.0000;FS=0.000;MQ=58.32;QD=19.20;SOR=1.609;VarDP=10 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,10:10:99:.:192,0:0,0,3,7 0/0:.:20:0:20:0,0,337 +chrX 1271409 . C T 655 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=34.25;DP=68;ExcessHet=0.0000;FS=0.000;MQ=58.21;QD=34.25;SOR=1.127;VarDP=20 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,20:20:99:.:685,0:0,0,8,12 0/0:.:47:99:47:0,120,1800 +chrX 1271526 . A AT 469.97 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=9.43;BaseQRankSum=-0.404;DP=120;ExcessHet=0.0000;FS=5.681;MQ=59.48;MQRankSum=-1.441;QD=9.43;ReadPosRankSum=1.497;SOR=1.202;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 1:22,32:54:99:.:509,0:10,12,20,12 0/0:.:61:74:61:0,74,1563 +chrX 1271542 . T C 639 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=11.53;BaseQRankSum=1.409;DP=120;ExcessHet=0.0000;FS=1.056;MQ=59.48;MQRankSum=-1.357;QD=11.53;ReadPosRankSum=1.281;SOR=0.916;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 1:22,36:58:99:.:669,0:13,9,23,13 0/0:.:61:74:61:0,74,1563 +chrX 1271547 . T C 692 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=12.45;BaseQRankSum=-0.953;DP=124;ExcessHet=0.0000;FS=1.062;MQ=59.44;MQRankSum=-1.307;QD=12.45;ReadPosRankSum=0.704;SOR=0.547;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 1:21,37:58:99:.:722,0:14,7,23,14 0/0:.:61:74:61:0,74,1563 +chrX 1271577 . T C 1831 . AC=2;AF=0.667;AN=3;AS_AltDP=80;AS_QD=13.39;BaseQRankSum=0.52;DP=147;ExcessHet=0.0000;FS=0.000;MQ=59.69;MQRankSum=0.986;QD=13.39;ReadPosRankSum=-0.583;SOR=0.639;VarDP=139 GT:AD:DP:GQ:PL:SB 1:25,49:74:99:1069,0:17,8,28,21 0/1:34,31:65:99:792,0,897:20,14,21,10 +chrX 1271578 . G A 1039 . AC=1;AF=0.333;AN=3;AS_AltDP=49;AS_QD=14.45;BaseQRankSum=-0.201;DP=146;ExcessHet=0.0000;FS=3.433;MQ=59.56;MQRankSum=-1.444;QD=14.45;ReadPosRankSum=-0.529;SOR=0.361;VarDP=74 GT:AD:DP:GQ:MIN_DP:PL:SB 1:25,49:74:99:.:1069,0:17,8,28,21 0/0:.:69:99:69:0,107,1800 +chrX 1271796 . C T 482 . AC=1;AF=0.333;AN=3;AS_AltDP=44;AS_QD=7.01;BaseQRankSum=-0.342;DP=143;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=7.01;ReadPosRankSum=-0.863;SOR=0.674;VarDP=73 GT:AD:DP:GQ:MIN_DP:PL:SB 1:29,44:73:99:.:512,0:13,16,20,24 0/0:.:69:99:69:0,107,1800 +chrX 1271812 . C T 851 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=13.15;BaseQRankSum=2.833;DP=136;ExcessHet=0.0000;FS=4.916;MQ=60.00;MQRankSum=0;QD=13.15;ReadPosRankSum=0.603;SOR=1.390;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,1482 0/1:35,32:67:99:.:881,0,875:17,18,11,21 +chrX 1272089 . G T 1225 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=20.57;BaseQRankSum=-0.573;DP=129;ExcessHet=0.0000;FS=2.133;MQ=60.00;MQRankSum=0;QD=20.57;ReadPosRankSum=-0.816;SOR=0.910;VarDP=61 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:67:99:67:.:.:0,1482 0|1:29,32:61:99:.:0|1:1272089_G_T:1255,0,1109:1272089:14,15,18,14 +chrX 1272097 . G A 1219 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=19.83;BaseQRankSum=-0.098;DP=133;ExcessHet=0.0000;FS=3.433;MQ=60.00;MQRankSum=0;QD=19.83;ReadPosRankSum=-0.523;SOR=0.832;VarDP=63 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:67:99:67:.:.:0,1482 0|1:31,32:63:99:.:0|1:1272089_G_T:1249,0,1163:1272089:14,17,18,14 +chrX 1272146 . G A 505 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=9.73;BaseQRankSum=1.099;DP=125;ExcessHet=0.0000;FS=1.075;MQ=59.71;MQRankSum=0.823;QD=9.73;ReadPosRankSum=0.295;SOR=0.936;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,1482 0/1:34,21:55:99:.:535,0,912:15,19,8,13 +chrX 1272185 . C T 1122 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=10.02;BaseQRankSum=2.669;DP=118;ExcessHet=0.0000;FS=7.140;MQ=59.82;MQRankSum=0.765;QD=10.02;ReadPosRankSum=1.478;SOR=0.770;VarDP=115 GT:AD:DP:GQ:PL:SB 1:20,40:60:99:655,0:7,13,23,17 0/1:36,19:55:99:497,0,932:17,19,10,9 +chrX 1272355 . G GA 644.97 . AC=2;AF=0.667;AN=3;AS_AltDP=46;AS_QD=7.52;BaseQRankSum=0.978;DP=99;ExcessHet=0.0000;FS=6.875;MQ=60.00;MQRankSum=0;QD=7.52;ReadPosRankSum=0.243;SOR=1.400;VarDP=91 GT:AD:DP:GQ:PL:SB 1:23,27:50:99:135,0:11,12,9,18 0/1:22,19:41:99:549,0,655:11,11,7,12 +chrX 1272381 . C A,CA 359 . AC=0,2;AF=0.00,0.667;AN=3;AS_AltDP=3,37;AS_QD=0.00,4.80;BaseQRankSum=-0.098;DP=102;ExcessHet=0.0000;FS=18.519;MQ=60.00;MQRankSum=0;QD=4.63;ReadPosRankSum=-0.029;SOR=2.173;VarDP=84 GT:AD:DP:GQ:PL:SB 2:20,3,22:45:99:107,854,0:12,8,5,20 0/2:24,0,15:39:99:282,354,948,0,594,549:11,13,5,10 +chrX 1272452 . C A 623 . AC=2;AF=0.667;AN=3;AS_AltDP=49;AS_QD=6.34;BaseQRankSum=3.082;DP=109;ExcessHet=0.0000;FS=0.736;MQ=59.93;MQRankSum=0.983;QD=6.34;ReadPosRankSum=1.147;SOR=0.818;VarDP=103 GT:AD:DP:GQ:PL:SB 1:29,26:55:17:17,0:17,12,12,14 0/1:25,23:48:99:636,0,630:10,15,11,12 +chrX 1272474 . CTTTAT C 3080.97 . AC=2;AF=0.667;AN=3;AS_AltDP=75;AS_QD=31.52;BaseQRankSum=0.95;DP=128;ExcessHet=0.0000;FS=3.134;MQ=59.90;MQRankSum=0;QD=31.52;ReadPosRankSum=1.072;SOR=1.091;VarDP=99 GT:AD:DP:GQ:PL:SB 1:0,52:52:99:2258,0:0,0,29,23 0/1:24,23:47:99:862,0,914:12,12,15,8 +chrX 1272801 . CT C 632.97 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=14.61;BaseQRankSum=0.676;DP=116;ExcessHet=0.0000;FS=6.348;MQ=59.62;MQRankSum=-1.751;QD=14.61;ReadPosRankSum=-0.324;SOR=1.439;VarDP=46 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:99:62:.:.:0,126 0|1:28,18:46:99:.:0|1:1272801_CT_C:672,0,1121:1272801:15,13,6,12 +chrX 1272815 . T C 968 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=18.15;BaseQRankSum=-1.847;DP=118;ExcessHet=0.0000;FS=3.783;MQ=59.63;MQRankSum=-1.481;QD=18.15;ReadPosRankSum=-1.141;SOR=1.184;VarDP=55 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:99:62:.:.:0,126 0|1:29,26:55:99:.:0|1:1272801_CT_C:998,0,1131:1272801:15,14,10,16 +chrX 1272825 . CTT C 970.97 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=16.56;BaseQRankSum=0.833;DP=124;ExcessHet=0.0000;FS=2.155;MQ=59.67;MQRankSum=-1.577;QD=16.56;ReadPosRankSum=-0.235;SOR=0.840;VarDP=61 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:99:62:.:.:0,126 0|1:34,27:61:99:.:0|1:1272801_CT_C:1010,0,1244:1272801:18,16,12,15 +chrX 1272853 . T C 565 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=11.23;BaseQRankSum=-2.128;DP=115;ExcessHet=0.0000;FS=2.323;MQ=59.93;MQRankSum=-1.021;QD=11.23;ReadPosRankSum=0.098;SOR=0.845;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,126 0/1:28,25:53:99:.:595,0,774:13,15,14,11 +chrX 1272905 . A G 449 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=9.39;BaseQRankSum=-0.537;DP=116;ExcessHet=0.0000;FS=2.388;MQ=60.00;MQRankSum=0;QD=9.39;ReadPosRankSum=-0.493;SOR=0.869;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,126 0/1:28,23:51:99:.:479,0,643:13,15,13,10 +chrX 1273039 . C T 303 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=6.40;BaseQRankSum=-0.763;DP=102;ExcessHet=0.0000;FS=0.000;MQ=59.47;MQRankSum=-1.147;QD=6.40;ReadPosRankSum=-0.187;SOR=0.737;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 1:21,31:52:99:.:333,0:12,9,18,13 0/0:.:52:35:48:0,35,1270 +chrX 1273125 . CT C 602.97 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=11.46;BaseQRankSum=-1.618;DP=124;ExcessHet=0.0000;FS=2.209;MQ=60.00;MQRankSum=0;QD=11.46;ReadPosRankSum=0.242;SOR=1.022;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,158 0/1:30,26:56:99:.:642,0,761:15,15,11,15 +chrX 1273451 . G A 1578 . AC=2;AF=0.667;AN=3;AS_AltDP=75;AS_QD=11.24;BaseQRankSum=2.174;DP=145;ExcessHet=0.0000;FS=0.616;MQ=59.86;MQRankSum=1.115;QD=11.24;ReadPosRankSum=1.187;SOR=0.774;VarDP=143 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:33,39:72:99:.:.:244,0:.:13,20,20,19 0|1:35,36:71:99:0|1:1273451_G_A:1364,0,1310:1273451:21,14,19,17 +chrX 1273464 . G A 1580 . AC=2;AF=0.667;AN=3;AS_AltDP=71;AS_QD=12.11;BaseQRankSum=0.617;DP=136;ExcessHet=0.0000;FS=2.189;MQ=59.85;MQRankSum=1.16;QD=12.11;ReadPosRankSum=1.65;SOR=0.788;VarDP=133 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:29,37:66:99:.:.:293,0:.:10,19,20,17 0|1:33,34:67:99:0|1:1273451_G_A:1317,0,1262:1273451:20,13,18,16 +chrX 1273747 . AT A 179.97 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=5.62;BaseQRankSum=0.459;DP=110;ExcessHet=0.0000;FS=2.886;MQ=58.84;MQRankSum=0.276;QD=5.62;ReadPosRankSum=-1.083;SOR=1.021;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,391 0/1:24,15:39:99:.:219,0,897:11,13,9,6 +chrX 1273753 . T TG 1148.97 . AC=2;AF=0.667;AN=3;AS_AltDP=48;AS_QD=13.05;BaseQRankSum=-1.401;DP=95;ExcessHet=0.0000;FS=1.715;MQ=58.62;MQRankSum=0.948;QD=13.05;ReadPosRankSum=1.394;SOR=0.487;VarDP=91 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:18,25:43:99:.:.:308,0:.:7,11,12,13 0|1:25,23:48:99:0|1:1273753_T_TG:880,0,944:1273753:11,14,11,12 +chrX 1273759 . T G 1278 . AC=2;AF=0.667;AN=3;AS_AltDP=49;AS_QD=14.70;BaseQRankSum=-0.611;DP=92;ExcessHet=0.0000;FS=1.733;MQ=58.58;MQRankSum=1.102;QD=14.70;ReadPosRankSum=1.151;SOR=0.568;VarDP=89 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:16,26:42:99:.:.:414,0:.:7,9,13,13 0|1:24,23:47:99:0|1:1273753_T_TG:894,0,915:1273753:11,13,12,11 +chrX 1273767 . A T 1293 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=15.75;BaseQRankSum=3.721;DP=86;ExcessHet=0.0000;FS=4.109;MQ=58.76;MQRankSum=1.054;QD=15.75;ReadPosRankSum=0.418;SOR=0.629;VarDP=84 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:15,23:38:99:.:.:381,0:.:6,9,12,11 0|1:22,24:46:99:0|1:1273753_T_TG:942,0,852:1273753:10,12,13,11 +chrX 1273770 . T TG 1279.97 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=15.52;BaseQRankSum=-0.59;DP=89;ExcessHet=0.0000;FS=4.156;MQ=58.61;MQRankSum=1.054;QD=15.52;ReadPosRankSum=0.564;SOR=0.601;VarDP=85 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:15,23:38:99:.:.:381,0:.:6,9,12,11 0|1:23,24:47:99:0|1:1273753_T_TG:938,0,876:1273753:10,13,13,11 +chrX 1273829 . G A 2028 . AC=2;AF=0.667;AN=3;AS_AltDP=68;AS_QD=24.80;BaseQRankSum=-1.079;DP=86;ExcessHet=0.0000;FS=10.874;MQ=59.51;MQRankSum=-1.439;QD=24.80;ReadPosRankSum=0.229;SOR=1.042;VarDP=83 GT:AD:DP:GQ:PL:SB 1:0,38:38:99:1276,0:0,0,23,15 0/1:15,30:45:99:782,0,367:5,10,19,11 +chrX 1273858 . G A 861 . AC=2;AF=0.667;AN=3;AS_AltDP=50;AS_QD=10.48;BaseQRankSum=0.919;DP=91;ExcessHet=0.0000;FS=5.706;MQ=59.57;MQRankSum=0;QD=10.48;ReadPosRankSum=0.342;SOR=1.241;VarDP=85 GT:AD:DP:GQ:PL:SB 1:20,23:43:99:109,0:12,8,15,8 0/1:15,27:42:99:782,0,395:5,10,16,11 +chrX 1273923 . T G 673 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=13.52;BaseQRankSum=-0.483;DP=98;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.52;ReadPosRankSum=-0.568;SOR=0.693;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:45:34:44:0,34 0/1:26,26:52:99:.:703,0,728:17,9,17,9 +chrX 1274563 . G A 627 . AC=2;AF=0.667;AN=3;AS_AltDP=22;AS_QD=11.73;BaseQRankSum=-1.015;DP=97;ExcessHet=0.0000;FS=18.458;MQ=55.72;MQRankSum=-2.31;QD=11.73;ReadPosRankSum=1.213;SOR=3.258;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,16:16:99:618,0:0,0,2,14 0/1:34,6:40:39:39,0,992:14,20,0,6 +chrX 1274598 . T G 147 . AC=2;AF=0.667;AN=3;AS_AltDP=15;AS_QD=2.77;BaseQRankSum=1.115;DP=102;ExcessHet=0.0000;FS=41.975;MQ=56.80;MQRankSum=-1.573;QD=2.77;ReadPosRankSum=2.31;SOR=5.548;VarDP=64 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:8,10:18:90:.:.:90,0:.:7,1,0,10 0|1:41,5:46:87:0|1:1274598_T_G:87,0,1706:1274598:20,21,0,5 +chrX 1274600 . T C 99 . AC=2;AF=0.667;AN=3;AS_AltDP=15;AS_QD=1.95;BaseQRankSum=-1.012;DP=96;ExcessHet=0.0000;FS=41.974;MQ=58.13;MQRankSum=-1.671;QD=1.95;ReadPosRankSum=2.044;SOR=5.548;VarDP=66 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:9,10:19:45:.:.:45,0:.:7,2,0,10 0|1:42,5:47:84:0|1:1274598_T_G:84,0,1749:1274598:21,21,0,5 +chrX 1274601 . A G 96 . AC=2;AF=0.667;AN=3;AS_AltDP=15;AS_QD=1.88;BaseQRankSum=1.611;DP=98;ExcessHet=0.0000;FS=41.116;MQ=58.16;MQRankSum=-1.671;QD=1.88;ReadPosRankSum=2.166;SOR=5.548;VarDP=67 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:9,10:19:45:.:.:45,0:.:7,2,0,10 0|1:43,5:48:81:0|1:1274598_T_G:81,0,1791:1274598:21,22,0,5 +chrX 1274605 . G T 96 . AC=2;AF=0.667;AN=3;AS_AltDP=15;AS_QD=1.88;BaseQRankSum=1.442;DP=100;ExcessHet=0.0000;FS=41.116;MQ=58.20;MQRankSum=-1.671;QD=1.88;ReadPosRankSum=1.022;SOR=5.548;VarDP=67 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:9,10:19:45:.:.:45,0:.:7,2,0,10 0|1:43,5:48:81:0|1:1274598_T_G:81,0,1791:1274598:21,22,0,5 +chrX 1274611 . C T 38 . AC=1;AF=0.500;AN=2;AS_AltDP=5;AS_QD=1.31;BaseQRankSum=1.262;DP=106;ExcessHet=0.0000;FS=12.662;MQ=59.25;MQRankSum=-3.001;QD=1.31;ReadPosRankSum=-2.022;SOR=3.609;VarDP=52 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB .:.:40:0:40:.:.:0,0 0|1:47,5:52:68:.:0|1:1274598_T_G:68,0,1958:1274598:24,23,0,5 +chrX 1274906 . A G 2355 . AC=2;AF=0.667;AN=3;AS_AltDP=82;AS_QD=22.29;BaseQRankSum=-0.894;DP=119;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=22.29;ReadPosRankSum=-0.795;SOR=0.765;VarDP=107 GT:AD:DP:GQ:PL:SB 1:0,52:52:99:1602,0:0,0,24,28 0/1:25,30:55:99:783,0,649:12,13,14,16 +chrX 1275486 . G A 970 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=15.38;BaseQRankSum=-0.645;DP=120;ExcessHet=0.0000;FS=8.592;MQ=60.00;MQRankSum=0;QD=15.38;ReadPosRankSum=1.065;SOR=0.405;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:53:99:53:0,486 0/1:27,38:65:99:.:1000,0,683:9,18,20,18 +chrX 1275607 . G A 2952 . AC=2;AF=0.667;AN=3;AS_AltDP=79;AS_QD=27.87;BaseQRankSum=1.251;DP=109;ExcessHet=0.0000;FS=8.615;MQ=60.00;MQRankSum=0;QD=27.87;ReadPosRankSum=-1.141;SOR=0.203;VarDP=107 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,47:47:99:.:.:1794,0:.:0,0,36,11 0|1:28,32:60:99:0|1:1275607_G_A:1188,0,1027:1275607:24,4,20,12 +chrX 1275627 . C T 1210 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=20.33;BaseQRankSum=1.025;DP=112;ExcessHet=0.0000;FS=2.502;MQ=60.00;MQRankSum=0;QD=20.33;ReadPosRankSum=-0.71;SOR=0.365;VarDP=61 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:51:43:47:.:.:0,43 0|1:28,33:61:99:.:0|1:1275607_G_A:1240,0,1024:1275607:22,6,23,10 +chrX 1276169 . TTTTG T 2654.97 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=32.07;BaseQRankSum=-0.078;DP=113;ExcessHet=0.0000;FS=3.434;MQ=59.96;MQRankSum=0;QD=32.07;ReadPosRankSum=0.8;SOR=0.669;VarDP=84 GT:AD:DP:GQ:PL:SB 1:0,44:44:99:1961,0:0,0,23,21 0/1:21,19:40:99:733,0,801:12,9,6,13 +chrX 1276360 . ATATTTATT A,ATATTTATTTATTTATT 1921.97 . AC=0,2;AF=0.00,0.667;AN=3;AS_AltDP=27,47;AS_QD=25.02,29.71;BaseQRankSum=1.187;DP=117;ExcessHet=0.0000;FS=0.000;MQ=59.86;MQRankSum=0;QD=21.09;ReadPosRankSum=-1.271;SOR=0.602;VarDP=93 GT:AD:DP:GQ:PL:SB 2:0,27,28:55:95:1246,95,0:0,0,28,27 0/2:19,0,19:38:99:715,773,1550,0,776,719:9,10,9,10 +chrX 1277118 . T TA 375.97 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=7.83;BaseQRankSum=0.645;DP=94;ExcessHet=0.0000;FS=1.083;MQ=59.90;MQRankSum=1.273;QD=7.83;ReadPosRankSum=-0.6;SOR=0.465;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 1:21,32:53:99:.:415,0:9,12,16,16 0/0:.:38:21:35:0,21,988 +chrX 1277593 . C CAA 408.97 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=14.45;BaseQRankSum=0.054;DP=101;ExcessHet=0.0000;FS=14.233;MQ=59.08;MQRankSum=0.255;QD=14.45;ReadPosRankSum=-1.581;SOR=2.233;VarDP=31 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:57:56:45:0,56 0/1:9,22:31:99:.:448,0,164:6,3,5,17 +chrX 1277693 . G A 903 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=15.05;BaseQRankSum=-0.632;DP=110;ExcessHet=0.0000;FS=0.979;MQ=59.45;MQRankSum=0.233;QD=15.05;ReadPosRankSum=-1.077;SOR=0.527;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:57:56:45:0,56 0/1:26,36:62:99:.:933,0,632:15,11,19,17 +chrX 1277956 . A G 253 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=7.86;BaseQRankSum=0.162;DP=89;ExcessHet=0.0000;FS=0.000;MQ=59.30;MQRankSum=-0.741;QD=7.86;ReadPosRankSum=-0.195;SOR=0.874;VarDP=36 GT:AD:DP:GQ:MIN_DP:PL:SB 1:14,22:36:99:.:283,0:7,7,12,10 0/0:.:51:46:51:0,46,1023 +chrX 1277976 . C CA 148.97 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=7.83;BaseQRankSum=-0.644;DP=126;ExcessHet=0.0000;FS=3.834;MQ=58.89;MQRankSum=0;QD=7.83;ReadPosRankSum=0;SOR=1.336;VarDP=24 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:85:99:85:0,660 0/1:12,12:24:99:.:188,0,202:7,5,4,8 +chrX 1278179 . C T 554 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=12.43;BaseQRankSum=-0.5;DP=137;ExcessHet=0.0000;FS=6.054;MQ=58.39;MQRankSum=0.418;QD=12.43;ReadPosRankSum=0.491;SOR=0.555;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:85:99:85:0,660 0/1:25,22:47:99:.:584,0,683:16,9,10,12 +chrX 1278355 . C T 1315 . AC=1;AF=0.333;AN=3;AS_AltDP=66;AS_QD=14.78;BaseQRankSum=1.013;DP=158;ExcessHet=0.0000;FS=11.930;MQ=58.99;MQRankSum=-1.674;QD=14.78;ReadPosRankSum=0.756;SOR=1.126;VarDP=91 GT:AD:DP:GQ:MIN_DP:PL:SB 1:25,66:91:99:.:1345,0:15,10,25,41 0/0:.:61:40:61:0,40,1310 +chrX 1278412 . T C 669 . AC=1;AF=0.333;AN=3;AS_AltDP=52;AS_QD=8.74;BaseQRankSum=-0.697;DP=146;ExcessHet=0.0000;FS=9.999;MQ=55.30;MQRankSum=-2.414;QD=8.74;ReadPosRankSum=0.091;SOR=0.766;VarDP=80 GT:AD:DP:GQ:MIN_DP:PL:SB 1:28,52:80:99:.:699,0:18,10,22,30 0/0:.:61:40:61:0,40,1310 +chrX 1278481 . T G 408 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=7.82;BaseQRankSum=-0.758;DP=120;ExcessHet=0.0000;FS=2.325;MQ=49.09;MQRankSum=-5.415;QD=7.82;ReadPosRankSum=-0.291;SOR=1.061;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 1:20,36:56:99:.:438,0:10,10,15,21 0/0:.:61:40:61:0,40,1310 +chrX 1278698 . A T 2258 . AC=3;AF=1.00;AN=3;AS_AltDP=75;AS_QD=30.11;BaseQRankSum=1.987;DP=82;ExcessHet=0.0000;FS=3.367;MQ=58.70;MQRankSum=-0.208;QD=30.11;ReadPosRankSum=-0.96;SOR=0.525;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,20:20:99:633,0:0,0,11,9 1/1:1,55:56:99:1655,157,0:1,0,23,32 +chrX 1278883 . C T 516 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=9.93;BaseQRankSum=2.344;DP=86;ExcessHet=0.0000;FS=1.053;MQ=58.95;MQRankSum=1.635;QD=9.93;ReadPosRankSum=-0.685;SOR=0.688;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:39:54:28:0,54 0/1:34,21:55:99:.:546,0,857:18,16,10,11 +chrX 1278985 . C T 465 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=9.52;BaseQRankSum=2.197;DP=84;ExcessHet=0.0000;FS=2.414;MQ=59.85;MQRankSum=-1.225;QD=9.52;ReadPosRankSum=-0.311;SOR=0.399;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:39:54:28:0,54 0/1:32,20:52:99:.:495,0,775:13,19,10,10 +chrX 1279130 . T C 2876 . AC=2;AF=0.667;AN=3;AS_AltDP=95;AS_QD=22.70;BaseQRankSum=3.644;DP=129;ExcessHet=0.0000;FS=0.763;MQ=59.74;MQRankSum=0;QD=22.70;ReadPosRankSum=1.493;SOR=0.843;VarDP=128 GT:AD:DP:GQ:PL:SB 1:0,61:61:99:1954,0:0,0,37,24 0/1:33,34:67:99:952,0,750:18,15,18,16 +chrX 1279350 . AAAT A 1260.97 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=20.00;BaseQRankSum=1.317;DP=141;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=20.00;ReadPosRankSum=0.868;SOR=0.735;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:99:68:0,506 0/1:31,34:65:99:.:1300,0,1172:14,17,15,19 +chrX 1279365 . T A,TTAA 73 . AC=1,0;AF=0.333,0.00;AN=3;AS_AltDP=24,0;AS_QD=2.15,0.00;BaseQRankSum=-1.033;DP=124;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=2.15;ReadPosRankSum=0.206;SOR=0.693;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 1:24,24,0:48:99:.:103,0,1519:11,13,11,13 0/0:.:62:99:62:0,102,1254,102,1254,1254 +chrX 1279758 . C T 904 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=15.31;BaseQRankSum=0.988;DP=124;ExcessHet=0.0000;FS=2.213;MQ=60.00;MQRankSum=0;QD=15.31;ReadPosRankSum=0.686;SOR=0.426;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:99:60:0,357 0/1:26,35:61:99:.:934,0,591:9,17,15,20 +chrX 1279777 . GTT G 1209.97 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=22.71;BaseQRankSum=0.399;DP=119;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=22.71;ReadPosRankSum=0.344;SOR=0.815;VarDP=55 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:60:99:60:.:.:0,357 0|1:23,32:55:99:.:0|1:1279777_GTT_G:1249,0,835:1279777:10,13,13,19 +chrX 1279801 . T C 1243 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=21.95;BaseQRankSum=-0.988;DP=118;ExcessHet=0.0000;FS=3.698;MQ=60.00;MQRankSum=0;QD=21.95;ReadPosRankSum=0.949;SOR=0.883;VarDP=58 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:59:71:59:.:.:0,71 0|1:25,33:58:99:.:0|1:1279777_GTT_G:1273,0,888:1279777:14,11,14,19 +chrX 1280488 . A G,AAAG 1963 . AC=2,0;AF=0.667,0.00;AN=3;AS_AltDP=42,3;AS_QD=34.96,17.39;BaseQRankSum=0.027;DP=97;ExcessHet=0.0000;FS=1.158;MQ=58.87;MQRankSum=0.283;QD=33.22;ReadPosRankSum=1.445;SOR=0.428;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,23,1:24:99:1252,0,1123:0,0,11,13 0/1:15,19,2:36:99:741,0,464,557,394,1236:6,9,11,10 +chrX 1280546 . G A 2052 . AC=2;AF=0.667;AN=3;AS_AltDP=69;AS_QD=21.69;BaseQRankSum=0.206;DP=100;ExcessHet=0.0000;FS=4.375;MQ=59.89;MQRankSum=0;QD=21.69;ReadPosRankSum=0.22;SOR=1.198;VarDP=96 GT:AD:DP:GQ:PL:SB 1:0,44:44:99:1434,0:0,0,29,15 0/1:27,25:52:99:648,0,706:14,13,14,11 +chrX 1280794 . A G 358 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=12.52;BaseQRankSum=-0.331;DP=72;ExcessHet=0.0000;FS=5.449;MQ=60.00;MQRankSum=0;QD=12.52;ReadPosRankSum=0.534;SOR=0.621;VarDP=31 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:41:99:41:0,450 0/1:15,16:31:99:.:388,0,379:5,10,9,7 +chrX 1280853 . T TCTC 415.97 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=18.20;BaseQRankSum=0.03;DP=74;ExcessHet=0.0000;FS=1.580;MQ=59.58;MQRankSum=0;QD=18.20;ReadPosRankSum=0.109;SOR=1.179;VarDP=25 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:41:99:41:.:.:0,450 0|1:12,13:25:99:.:0|1:1280853_T_TCTC:455,0,445:1280853:6,6,8,5 +chrX 1280873 . T TCC 130.97 . AC=1;AF=0.333;AN=3;AS_AltDP=8;AS_QD=15.45;BaseQRankSum=-0.66;DP=68;ExcessHet=0.0000;FS=22.175;MQ=56.02;MQRankSum=0.301;QD=15.45;ReadPosRankSum=-0.191;SOR=4.395;VarDP=11 GT:AD:DP:GQ:MIN_DP:PL:SB 1:3,8:11:99:.:170,0:3,0,0,8 0/0:.:31:37:29:0,37,758 +chrX 1281006 . C T 120 . AC=2;AF=0.667;AN=3;AS_AltDP=12;AS_QD=5.00;BaseQRankSum=1.135;DP=33;ExcessHet=0.0000;FS=5.792;MQ=54.01;MQRankSum=1.55;QD=5.00;ReadPosRankSum=-0.196;SOR=1.304;VarDP=30 GT:AD:DP:GQ:PL:SB 1:6,8:14:88:88,0:4,2,2,6 0/1:12,4:16:62:62,0,193:7,5,2,2 +chrX 1281112 . TCTC T,CCTC 270 . AC=1,0;AF=0.333,0.00;AN=3;AS_AltDP=8,4;AS_QD=23.08,6.78;BaseQRankSum=-1.121;DP=35;ExcessHet=0.0000;FS=0.000;MQ=56.66;MQRankSum=-1.57;QD=17.65;ReadPosRankSum=0.341;SOR=0.693;VarDP=17 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:10:20:10:0,20,20 0/1:5,8,4:17:99:.:300,0,228,239,121,385:2,3,5,7 +chrX 1281540 . C T 2168 . AC=2;AF=0.667;AN=3;AS_AltDP=71;AS_QD=23.38;BaseQRankSum=2.998;DP=106;ExcessHet=0.0000;FS=10.026;MQ=59.69;MQRankSum=1.048;QD=23.38;ReadPosRankSum=1.762;SOR=0.245;VarDP=94 GT:AD:DP:GQ:PL:SB 1:2,50:52:99:1634,0:1,1,23,27 0/1:21,21:42:99:564,0,529:6,15,13,8 +chrX 1282031 . T TA 800.97 . AC=2;AF=0.667;AN=3;AS_AltDP=50;AS_QD=12.73;BaseQRankSum=0.927;DP=103;ExcessHet=0.0000;FS=2.694;MQ=59.09;MQRankSum=0;QD=12.73;ReadPosRankSum=-0.35;SOR=1.242;VarDP=66 GT:AD:DP:GQ:PL:SB 1:2,37:39:99:667,0:1,1,28,9 0/1:14,13:27:99:173,0,194:9,5,8,5 +chrX 1283123 . GTTCC G 1802.97 . AC=2;AF=0.667;AN=3;AS_AltDP=46;AS_QD=27.09;BaseQRankSum=1.256;DP=96;ExcessHet=0.0000;FS=1.009;MQ=59.51;MQRankSum=1.104;QD=27.09;ReadPosRankSum=1.306;SOR=0.981;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,34:34:99:1426,0:0,0,11,23 0/1:22,12:34:99:416,0,833:10,12,7,5 +chrX 1283167 . GTTCC G 2663.97 . AC=3;AF=1.00;AN=3;AS_AltDP=63;AS_QD=31.10;DP=87;ExcessHet=0.0000;FS=0.000;MQ=59.22;QD=42.90;SOR=1.270;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:1328,0:0,0,11,20 1/1:0,32:32:96:1375,96,0:0,0,13,19 +chrX 1284119 . T C 2603 . AC=2;AF=0.667;AN=3;AS_AltDP=88;AS_QD=22.90;BaseQRankSum=-1.444;DP=118;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=22.90;ReadPosRankSum=-0.009;SOR=0.709;VarDP=115 GT:AD:DP:GQ:PL:SB 1:0,62:62:99:1959,0:0,0,25,37 0/1:27,26:53:99:674,0,749:12,15,14,12 +chrX 1284189 . G C 2889 . AC=2;AF=0.667;AN=3;AS_AltDP=69;AS_QD=33.94;BaseQRankSum=-0.631;DP=89;ExcessHet=0.0000;FS=1.039;MQ=58.60;MQRankSum=0.612;QD=33.94;ReadPosRankSum=1.206;SOR=0.759;VarDP=86 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,51:51:99:.:.:2249,0:.:0,0,28,23 0|1:17,18:35:99:0|1:1284189_G_C:670,0,638:1284189:8,9,9,9 +chrX 1284195 . CTTTT C 2893.97 . AC=2;AF=0.667;AN=3;AS_AltDP=70;AS_QD=32.59;BaseQRankSum=-1.333;DP=90;ExcessHet=0.0000;FS=3.492;MQ=58.24;MQRankSum=1.18;QD=32.59;ReadPosRankSum=0.775;SOR=0.547;VarDP=90 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,53:53:99:.:.:2304,0:.:0,0,28,25 0|1:20,17:37:99:0|1:1284189_G_C:629,0,782:1284189:8,12,9,8 +chrX 1284201 . T C 2833 . AC=2;AF=0.667;AN=3;AS_AltDP=68;AS_QD=32.53;BaseQRankSum=-0.633;DP=95;ExcessHet=0.0000;FS=5.040;MQ=58.33;MQRankSum=1.18;QD=32.53;ReadPosRankSum=-0.381;SOR=0.636;VarDP=88 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,51:51:99:.:.:2234,0:.:0,0,28,23 0|1:20,17:37:99:0|1:1284189_G_C:629,0,782:1284189:8,12,9,8 +chrX 1284273 . G A 1156 . AC=2;AF=0.667;AN=3;AS_AltDP=45;AS_QD=15.21;BaseQRankSum=1.956;DP=83;ExcessHet=0.0000;FS=8.084;MQ=56.32;MQRankSum=0.608;QD=15.21;ReadPosRankSum=1.163;SOR=1.578;VarDP=78 GT:AD:DP:GQ:PL:SB 1:6,38:44:99:1054,0:2,4,11,27 0/1:27,7:34:99:132,0,778:12,15,1,6 +chrX 1284611 . TTTA T 280.97 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=7.44;BaseQRankSum=1.211;DP=120;ExcessHet=0.0000;FS=7.897;MQ=49.82;MQRankSum=-3.231;QD=7.44;ReadPosRankSum=-0.223;SOR=1.738;VarDP=43 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:75:99:75:.:.:0,150 0|1:32,11:43:99:.:0|1:1284611_TTTA_T:320,0,1268:1284611:18,14,3,8 +chrX 1284626 . C G 250 . AC=1;AF=0.500;AN=2;AS_AltDP=9;AS_QD=7.37;BaseQRankSum=0.619;DP=100;ExcessHet=0.0000;FS=1.531;MQ=52.82;MQRankSum=-3.729;QD=7.37;ReadPosRankSum=0.584;SOR=0.674;VarDP=38 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB .:.:60:0:60:.:.:0,0 0|1:29,9:38:99:.:0|1:1284611_TTTA_T:280,0,1180:1284611:17,12,4,5 +chrX 1284660 . A ATT 132.97 . AC=1;AF=0.333;AN=3;AS_AltDP=10;AS_QD=9.05;BaseQRankSum=0.641;DP=111;ExcessHet=0.0000;FS=17.041;MQ=53.48;MQRankSum=-0.264;QD=9.05;ReadPosRankSum=1.103;SOR=3.232;VarDP=19 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:71:99:71:0,758 0/1:9,10:19:99:.:172,0,192:3,6,9,1 +chrX 1284910 . G A 188 . AC=1;AF=0.333;AN=3;AS_AltDP=10;AS_QD=2.83;BaseQRankSum=0.953;DP=132;ExcessHet=0.0000;FS=0.000;MQ=58.99;MQRankSum=-4.52;QD=2.83;ReadPosRankSum=-3.028;SOR=0.835;VarDP=77 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:52:99:52:.:.:0,1373 0|1:67,10:77:99:.:0|1:1284910_G_A:218,0,2783:1284910:30,37,4,6 +chrX 1284914 . A G 188 . AC=1;AF=0.333;AN=3;AS_AltDP=10;AS_QD=2.83;BaseQRankSum=0.817;DP=130;ExcessHet=0.0000;FS=0.000;MQ=59.13;MQRankSum=-4.52;QD=2.83;ReadPosRankSum=-3.365;SOR=0.835;VarDP=77 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:52:99:52:.:.:0,1373 0|1:67,10:77:99:.:0|1:1284910_G_A:218,0,2783:1284910:30,37,4,6 +chrX 1284919 . A G 137 . AC=1;AF=0.333;AN=3;AS_AltDP=9;AS_QD=2.11;BaseQRankSum=0.297;DP=132;ExcessHet=0.0000;FS=1.404;MQ=59.16;MQRankSum=-4.869;QD=2.11;ReadPosRankSum=-3.322;SOR=1.161;VarDP=79 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:52:99:52:.:.:0,1373 0|1:70,9:79:99:.:0|1:1284910_G_A:167,0,2882:1284910:32,38,3,6 +chrX 1284924 . A C 59 . AC=1;AF=0.333;AN=3;AS_AltDP=7;AS_QD=1.19;BaseQRankSum=1.073;DP=129;ExcessHet=0.0000;FS=0.000;MQ=59.12;MQRankSum=-5.445;QD=1.19;ReadPosRankSum=-2.982;SOR=0.687;VarDP=75 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:52:99:52:.:.:0,1373 0|1:68,7:75:89:.:0|1:1284910_G_A:89,0,2804:1284910:30,38,3,4 +chrX 1284962 . T C 2264 . AC=2;AF=0.667;AN=3;AS_AltDP=81;AS_QD=19.12;BaseQRankSum=0.303;DP=122;ExcessHet=0.0000;FS=6.139;MQ=59.78;MQRankSum=0;QD=19.12;ReadPosRankSum=-2.34;SOR=1.164;VarDP=120 GT:AD:DP:GQ:PL:SB 1:0,48:48:99:1463,0:0,0,17,31 0/1:39,33:72:99:831,0,1029:20,19,15,18 +chrX 1285064 . A T 3194 . AC=2;AF=0.667;AN=3;AS_AltDP=78;AS_QD=28.79;BaseQRankSum=1.336;DP=114;ExcessHet=0.0000;FS=8.586;MQ=60.00;MQRankSum=0;QD=28.79;ReadPosRankSum=-1.077;SOR=1.580;VarDP=112 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,51:51:99:.:.:2212,0:.:0,0,34,17 0|1:34,27:61:99:0|1:1285064_A_T:1012,0,1323:1285064:17,17,18,9 +chrX 1285065 . A T 3194 . AC=2;AF=0.667;AN=3;AS_AltDP=78;AS_QD=28.79;BaseQRankSum=0.854;DP=115;ExcessHet=0.0000;FS=8.586;MQ=60.00;MQRankSum=0;QD=28.79;ReadPosRankSum=-1.039;SOR=1.580;VarDP=112 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,51:51:99:.:.:2212,0:.:0,0,34,17 0|1:34,27:61:99:0|1:1285064_A_T:1012,0,1323:1285064:17,17,18,9 +chrX 1285120 . G C 3151 . AC=2;AF=0.667;AN=3;AS_AltDP=102;AS_QD=22.40;BaseQRankSum=2.11;DP=144;ExcessHet=0.0000;FS=17.047;MQ=60.00;MQRankSum=0;QD=22.40;ReadPosRankSum=0.548;SOR=1.773;VarDP=142 GT:AD:DP:GQ:PL:SB 1:0,74:74:99:2432,0:0,0,54,20 0/1:40,28:68:99:749,0,1061:19,21,17,11 +chrX 1285168 . T A 3332 . AC=2;AF=0.667;AN=3;AS_AltDP=116;AS_QD=21.41;BaseQRankSum=-0.284;DP=158;ExcessHet=0.0000;FS=1.444;MQ=60.00;MQRankSum=0;QD=21.41;ReadPosRankSum=-0.323;SOR=0.863;VarDP=157 GT:AD:DP:GQ:PL:SB 1:0,77:77:99:2396,0:0,0,44,33 0/1:41,39:80:99:966,0,1065:21,20,20,19 +chrX 1285387 . G A 2619 . AC=2;AF=0.667;AN=3;AS_AltDP=89;AS_QD=21.71;BaseQRankSum=1.117;DP=126;ExcessHet=0.0000;FS=6.780;MQ=60.00;MQRankSum=0;QD=21.71;ReadPosRankSum=1.252;SOR=1.394;VarDP=122 GT:AD:DP:GQ:PL:SB 1:1,53:54:99:1703,0:1,0,17,36 0/1:32,36:68:99:946,0,777:15,17,14,22 +chrX 1285432 . G A 2325 . AC=2;AF=0.667;AN=3;AS_AltDP=79;AS_QD=21.61;BaseQRankSum=1.726;DP=112;ExcessHet=0.0000;FS=1.746;MQ=59.96;MQRankSum=0;QD=21.61;ReadPosRankSum=0.95;SOR=0.508;VarDP=109 GT:AD:DP:GQ:PL:SB 1:2,50:52:99:1618,0:0,2,22,28 0/1:28,29:57:99:737,0,752:12,16,14,15 +chrX 1285484 . G A 1914 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=22.09;BaseQRankSum=2.385;DP=90;ExcessHet=0.0000;FS=3.100;MQ=59.47;MQRankSum=0.355;QD=22.09;ReadPosRankSum=-0.239;SOR=0.974;VarDP=88 GT:AD:DP:GQ:PL:SB 1:1,43:44:99:1450,0:0,1,20,23 0/1:26,18:44:99:494,0,672:14,12,6,12 +chrX 1285628 . GAGCTTGC G 2613.97 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=31.96;BaseQRankSum=0.457;DP=91;ExcessHet=0.0000;FS=5.069;MQ=59.36;MQRankSum=0;QD=31.96;ReadPosRankSum=-0.705;SOR=0.279;VarDP=83 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,41:41:99:.:.:1834,0:.:0,0,21,20 0|1:21,21:42:99:0|1:1285628_GAGCTTGC_G:819,0,818:1285628:14,7,11,10 +chrX 1285648 . C G 2856 . AC=2;AF=0.667;AN=3;AS_AltDP=67;AS_QD=32.80;BaseQRankSum=0.348;DP=88;ExcessHet=0.0000;FS=3.396;MQ=59.14;MQRankSum=0;QD=32.80;ReadPosRankSum=0.203;SOR=0.393;VarDP=88 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,45:45:99:.:.:2025,0:.:0,0,26,19 0|1:21,22:43:99:0|1:1285628_GAGCTTGC_G:861,0,816:1285628:14,7,12,10 +chrX 1285660 . G C 2511 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=32.16;BaseQRankSum=0.424;DP=81;ExcessHet=0.0000;FS=3.669;MQ=58.79;MQRankSum=0;QD=32.16;ReadPosRankSum=0.57;SOR=0.333;VarDP=79 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,41:41:99:.:.:1845,0:.:0,0,24,17 0|1:20,18:38:99:0|1:1285628_GAGCTTGC_G:696,0,786:1285628:14,6,10,8 +chrX 1285701 . C CA 129.97 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=4.97;BaseQRankSum=1.027;DP=92;ExcessHet=0.0000;FS=1.365;MQ=57.61;MQRankSum=-1.48;QD=4.97;ReadPosRankSum=-1.208;SOR=1.179;VarDP=34 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:38:99:38:0,907 0/1:16,18:34:99:.:169,0,462:8,8,7,11 +chrX 1285719 . AAAAAAAAAAAAAG A 2012.97 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=21.60;BaseQRankSum=1.277;DP=102;ExcessHet=0.0000;FS=0.000;MQ=57.11;MQRankSum=1.117;QD=21.60;ReadPosRankSum=-0.904;SOR=0.699;VarDP=95 GT:AD:DP:GQ:PL:SB 1:3,43:46:99:1528,0:3,0,22,21 0/1:30,19:49:99:524,0,1107:14,16,10,9 +chrX 1285939 . T G 2561 . AC=2;AF=0.667;AN=3;AS_AltDP=84;AS_QD=21.96;BaseQRankSum=2.08;DP=123;ExcessHet=0.0000;FS=9.865;MQ=60.00;MQRankSum=0;QD=21.96;ReadPosRankSum=0.378;SOR=0.496;VarDP=118 GT:AD:DP:GQ:PL:SB 1:0,62:62:99:1995,0:0,0,35,27 0/1:34,22:56:99:596,0,939:12,22,10,12 +chrX 1286017 . C A 5662 . AC=3;AF=1.00;AN=3;AS_AltDP=131;AS_QD=29.01;BaseQRankSum=2.621;DP=139;ExcessHet=0.0000;FS=0.000;MQ=58.84;MQRankSum=-0.352;QD=43.12;ReadPosRankSum=-1.155;SOR=0.247;VarDP=132 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,56:57:99:.:.:2429,0:.:1,0,26,30 1|1:0,75:75:99:0|1:1286017_C_A:3263,226,0:1286017:0,0,39,36 +chrX 1286038 . T C 5809 . AC=3;AF=1.00;AN=3;AS_AltDP=130;AS_QD=30.04;DP=135;ExcessHet=0.0000;FS=0.000;MQ=58.52;QD=44.92;SOR=0.822;VarDP=130 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,56:56:99:.:.:2520,0:.:0,0,27,29 1|1:0,74:74:99:0|1:1286017_C_A:3319,223,0:1286017:0,0,34,40 +chrX 1286043 . T C 5684 . AC=3;AF=1.00;AN=3;AS_AltDP=127;AS_QD=28.43;DP=131;ExcessHet=0.0000;FS=0.000;MQ=58.58;QD=44.99;SOR=0.843;VarDP=127 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,54:54:99:.:.:2430,0:.:0,0,26,28 1|1:0,73:73:99:0|1:1286017_C_A:3284,220,0:1286017:0,0,33,40 +chrX 1286048 . G A 2874 . AC=2;AF=0.667;AN=3;AS_AltDP=76;AS_QD=24.20;BaseQRankSum=1.176;DP=127;ExcessHet=0.0000;FS=8.758;MQ=58.40;MQRankSum=-0.18;QD=24.20;ReadPosRankSum=-1.082;SOR=0.897;VarDP=120 GT:AD:DP:GQ:PL:SB 1:0,50:50:99:2250,0:0,0,24,26 0/1:44,26:70:99:654,0,1193:25,19,8,18 +chrX 1286071 . A G 4643 . AC=3;AF=1.00;AN=3;AS_AltDP=122;AS_QD=31.05;BaseQRankSum=1.436;DP=128;ExcessHet=0.0000;FS=3.191;MQ=58.28;MQRankSum=-0.384;QD=37.99;ReadPosRankSum=0.217;SOR=0.381;VarDP=123 GT:AD:DP:GQ:PL:SB 1:0,51:51:99:2193,0:0,0,24,27 1/1:1,71:72:99:2480,190,0:1,0,34,37 +chrX 1286267 . T C 698 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=14.56;BaseQRankSum=-1.942;DP=110;ExcessHet=0.0000;FS=2.544;MQ=59.59;MQRankSum=-0.676;QD=14.56;ReadPosRankSum=1.291;SOR=0.951;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,1505 0/1:17,33:50:99:.:728,0,393:9,8,14,19 +chrX 1286280 . G A 870 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=19.15;BaseQRankSum=1.251;DP=108;ExcessHet=0.0000;FS=2.735;MQ=59.57;MQRankSum=-0.639;QD=19.15;ReadPosRankSum=-0.32;SOR=1.041;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,1505 0/1:15,32:47:99:.:900,0,310:8,7,13,19 +chrX 1286350 . C G 709 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=15.40;BaseQRankSum=0.194;DP=112;ExcessHet=0.0000;FS=6.089;MQ=59.27;MQRankSum=0.179;QD=15.40;ReadPosRankSum=-0.072;SOR=1.064;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,1505 0/1:22,26:48:99:.:739,0,600:13,9,10,16 +chrX 1286388 . G T 917 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=17.87;BaseQRankSum=-0.433;DP=114;ExcessHet=0.0000;FS=2.323;MQ=59.31;MQRankSum=-0.027;QD=17.87;ReadPosRankSum=-1.127;SOR=0.404;VarDP=53 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:59:99:59:.:.:0,1505 0|1:27,26:53:99:.:0|1:1286388_G_T:947,0,1024:1286388:16,11,13,13 +chrX 1286395 . C G 914 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=17.48;BaseQRankSum=-2.06;DP=113;ExcessHet=0.0000;FS=2.363;MQ=59.30;MQRankSum=-0.053;QD=17.48;ReadPosRankSum=-1.221;SOR=0.369;VarDP=54 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:59:99:59:.:.:0,1505 0|1:28,26:54:99:.:0|1:1286388_G_T:944,0,1055:1286388:18,10,14,12 +chrX 1286422 . A G 2698 . AC=2;AF=0.667;AN=3;AS_AltDP=92;AS_QD=23.72;BaseQRankSum=-1.914;DP=122;ExcessHet=0.0000;FS=0.000;MQ=59.56;MQRankSum=-1.131;QD=23.72;ReadPosRankSum=-0.151;SOR=0.625;VarDP=115 GT:AD:DP:GQ:PL:SB 1:0,57:57:99:1825,0:0,0,31,26 0/1:23,35:58:99:903,0,591:13,10,19,16 +chrX 1286474 . CAGG C 1001.97 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=15.77;BaseQRankSum=0.476;DP=139;ExcessHet=0.0000;FS=0.946;MQ=59.64;MQRankSum=0.306;QD=15.77;ReadPosRankSum=2.261;SOR=0.539;VarDP=66 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:69:99:69:.:.:0,1766 0|1:38,28:66:99:.:0|1:1286474_CAGG_C:1041,0,1501:1286474:22,16,15,13 +chrX 1286487 . G C 1014 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=16.06;BaseQRankSum=0.222;DP=136;ExcessHet=0.0000;FS=0.965;MQ=59.67;MQRankSum=-0.199;QD=16.06;ReadPosRankSum=1.969;SOR=0.490;VarDP=65 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:69:99:69:.:.:0,1766 0|1:37,28:65:99:.:0|1:1286474_CAGG_C:1044,0,1459:1286474:22,15,15,13 +chrX 1286570 . CAAAAA CAAAA,C 3041.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=83,26;AS_QD=25.46,31.49;DP=135;ExcessHet=0.0000;FS=0.000;MQ=59.90;QD=28.27;SOR=0.787;VarDP=109 GT:AD:DP:GQ:PL:SB 1:0,54,0:54:99:1372,0,1372:0,0,28,26 1/2:0,29,26:55:99:1709,1055,968,736,0,1335:0,0,29,26 +chrX 1287078 . T C 2063 . AC=2;AF=0.667;AN=3;AS_AltDP=71;AS_QD=20.72;BaseQRankSum=0.841;DP=106;ExcessHet=0.0000;FS=2.874;MQ=60.00;MQRankSum=0;QD=20.72;ReadPosRankSum=-1.638;SOR=0.810;VarDP=101 GT:AD:DP:GQ:PL:SB 1:0,40:40:99:1229,0:0,0,21,19 0/1:30,31:61:99:864,0,770:14,16,18,13 +chrX 1287207 . A G 972 . AC=2;AF=0.667;AN=3;AS_AltDP=43;AS_QD=14.52;BaseQRankSum=2.342;DP=72;ExcessHet=0.0000;FS=2.239;MQ=58.89;MQRankSum=0;QD=14.52;ReadPosRankSum=0.517;SOR=1.054;VarDP=69 GT:AD:DP:GQ:PL:SB 1:11,18:29:99:273,0:6,5,5,13 0/1:15,25:40:99:729,0,376:3,12,7,18 +chrX 1287301 . G C 114 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=3.27;BaseQRankSum=0.283;DP=93;ExcessHet=0.0000;FS=2.622;MQ=58.83;MQRankSum=0.307;QD=3.27;ReadPosRankSum=1.179;SOR=0.368;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 1:20,24:44:99:.:144,0:7,13,11,13 0/0:.:48:53:48:0,53,1261 +chrX 1287354 . A C 4186 . AC=3;AF=1.00;AN=3;AS_AltDP=97;AS_QD=30.33;BaseQRankSum=2.181;DP=100;ExcessHet=0.0000;FS=0.000;MQ=59.61;MQRankSum=4.358;QD=43.02;ReadPosRankSum=0.12;SOR=0.379;VarDP=98 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,57:58:99:.:.:2457,0:.:0,1,24,33 1|1:0,40:40:99:0|1:1287354_A_C:1759,120,0:1287354:0,0,17,23 +chrX 1287361 . C T 4116 . AC=3;AF=1.00;AN=3;AS_AltDP=95;AS_QD=35.08;BaseQRankSum=2.219;DP=98;ExcessHet=0.0000;FS=0.000;MQ=59.55;MQRankSum=4.281;QD=43.19;ReadPosRankSum=0.578;SOR=0.357;VarDP=96 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,55:56:99:.:.:2387,0:.:0,1,24,31 1|1:0,40:40:99:0|1:1287354_A_C:1759,120,0:1287354:0,0,17,23 +chrX 1287457 . T G 1477 . AC=2;AF=0.667;AN=3;AS_AltDP=48;AS_QD=31.40;DP=102;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.40;SOR=0.693;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:52:99:52:0,976 1/1:0,48:48:99:.:1507,144,0:0,0,24,24 +chrX 1287653 . A G 1183 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=32.78;BaseQRankSum=2.431;DP=92;ExcessHet=0.0000;FS=0.000;MQ=53.30;MQRankSum=-0.27;QD=32.78;ReadPosRankSum=1.587;SOR=0.442;VarDP=37 GT:AD:DP:GQ:MIN_DP:PL:SB 1:3,34:37:99:.:1213,0:1,2,16,18 0/0:.:53:36:52:0,36,1263 +chrX 1287659 . A G 1493 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=34.39;DP=91;ExcessHet=0.0000;FS=0.000;MQ=53.12;QD=42.31;SOR=0.804;VarDP=36 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,36:36:99:.:1523,0:0,0,17,19 0/0:.:53:36:52:0,36,1263 +chrX 1287663 . T C 88 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=3.58;BaseQRankSum=-0.893;DP=88;ExcessHet=0.0000;FS=1.356;MQ=53.10;MQRankSum=-1.106;QD=3.58;ReadPosRankSum=2.361;SOR=1.061;VarDP=33 GT:AD:DP:GQ:MIN_DP:PL:SB 1:16,17:33:99:.:118,0:8,8,7,10 0/0:.:53:36:52:0,36,1263 +chrX 1287691 . G A 481 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=18.93;BaseQRankSum=0.529;DP=80;ExcessHet=0.0000;FS=1.690;MQ=52.89;MQRankSum=-0.31;QD=18.93;ReadPosRankSum=1.834;SOR=0.503;VarDP=27 GT:AD:DP:GQ:MIN_DP:PL:SB 1:8,19:27:99:.:511,0:5,3,9,10 0/0:.:53:36:52:0,36,1263 +chrX 1287696 . G C 481 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=18.93;BaseQRankSum=1.368;DP=80;ExcessHet=0.0000;FS=1.690;MQ=52.89;MQRankSum=-0.31;QD=18.93;ReadPosRankSum=0.858;SOR=0.503;VarDP=27 GT:AD:DP:GQ:MIN_DP:PL:SB 1:8,19:27:99:.:511,0:5,3,9,10 0/0:.:53:36:52:0,36,1263 +chrX 1287705 . G A 651 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=27.24;BaseQRankSum=1.011;DP=78;ExcessHet=0.0000;FS=12.128;MQ=52.77;MQRankSum=0.289;QD=27.24;ReadPosRankSum=1.007;SOR=0.027;VarDP=25 GT:AD:DP:GQ:MIN_DP:PL:SB 1:5,20:25:99:.:681,0:5,0,10,10 0/0:.:53:36:52:0,36,1263 +chrX 1287885 . T C 726 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=30.24;DP=80;ExcessHet=0.0000;FS=0.000;MQ=58.59;QD=30.24;SOR=1.136;VarDP=25 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,25:25:99:.:756,0:0,0,10,15 0/0:.:53:36:52:0,36,1263 +chrX 1287988 . T C 3074 . AC=3;AF=1.00;AN=3;AS_AltDP=99;AS_QD=31.35;DP=103;ExcessHet=0.0000;FS=0.000;MQ=58.70;QD=31.35;SOR=1.384;VarDP=99 GT:AD:DP:GQ:PL:SB 1:0,51:51:99:1617,0:0,0,19,32 1/1:0,48:48:99:1487,144,0:0,0,17,31 +chrX 1288102 . A G 1878 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=30.77;DP=126;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.77;SOR=0.758;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,174 1/1:0,62:62:99:.:1908,185,0:0,0,30,32 +chrX 1288208 . A G 1422 . AC=1;AF=0.333;AN=3;AS_AltDP=47;AS_QD=30.89;DP=97;ExcessHet=0.0000;FS=0.000;MQ=59.94;QD=30.89;SOR=1.659;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,47:47:99:.:1452,0:0,0,32,15 0/0:.:48:77:48:0,77,1042 +chrX 1288246 . C G 1168 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=30.72;BaseQRankSum=2.355;DP=65;ExcessHet=0.0000;FS=0.000;MQ=59.93;MQRankSum=0;QD=30.72;ReadPosRankSum=0.222;SOR=1.179;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,38:39:99:.:1198,0:1,0,29,9 0/0:.:24:0:24:0,0,397 +chrX 1288274 . G C 513 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=33.93;BaseQRankSum=0;DP=76;ExcessHet=0.0000;FS=0.000;MQ=56.83;MQRankSum=2.071;QD=38.79;ReadPosRankSum=-0.498;SOR=0.442;VarDP=14 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:58:49:58:.:.:0,49 0|1:1,13:14:3:.:0|1:1288274_G_C:543,0,3:1288274:0,1,7,6 +chrX 1288279 . T C 512 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=28.56;BaseQRankSum=-0.348;DP=75;ExcessHet=0.0000;FS=0.000;MQ=56.63;MQRankSum=2.071;QD=38.71;ReadPosRankSum=-0.498;SOR=0.442;VarDP=14 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:58:49:58:.:.:0,49 0|1:1,13:14:2:.:0|1:1288274_G_C:542,0,2:1288274:0,1,7,6 +chrX 1288297 . C T 386 . AC=1;AF=0.333;AN=3;AS_AltDP=10;AS_QD=26.54;BaseQRankSum=0;DP=72;ExcessHet=0.0000;FS=0.000;MQ=55.89;MQRankSum=1.81;QD=37.82;ReadPosRankSum=-0.16;SOR=0.399;VarDP=11 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:58:49:58:.:.:0,49 0|1:1,10:11:11:.:0|1:1288297_C_T:416,0,11:1288297:0,1,4,6 +chrX 1288298 . A *,G 388 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=2,10;AS_QD=0.00,32.57;BaseQRankSum=0;DP=72;ExcessHet=0.0000;FS=0.000;MQ=55.89;MQRankSum=1.988;QD=32.15;ReadPosRankSum=-0.403;SOR=0.223;VarDP=13 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:58:49:58:.:.:0,49,49 1|2:1,2,10:13:2:.:0|1:1288297_C_T:418,378,416,2,0,13:1288297:0,1,6,6 +chrX 1288375 . G A 130 . AC=2;AF=0.667;AN=3;AS_AltDP=5;AS_QD=32.00;DP=63;ExcessHet=0.0000;FS=0.000;MQ=46.72;QD=32.00;SOR=1.022;VarDP=5 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:58:49:58:0,49 1/1:0,5:5:13:.:160,13,0:0,0,2,3 +chrX 1288388 . G A 375 . AC=2;AF=0.667;AN=3;AS_AltDP=9;AS_QD=31.08;DP=67;ExcessHet=0.0000;FS=0.000;MQ=49.88;QD=45.00;SOR=0.892;VarDP=9 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:58:49:58:.:.:0,49 1|1:0,9:9:27:.:0|1:1288388_G_A:405,27,0:1288388:0,0,4,5 +chrX 1288396 . T C 555 . AC=2;AF=0.667;AN=3;AS_AltDP=13;AS_QD=30.84;DP=71;ExcessHet=0.0000;FS=0.000;MQ=53.20;QD=45.00;SOR=0.836;VarDP=13 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:58:49:58:.:.:0,49 1|1:0,13:13:39:.:0|1:1288388_G_A:585,39,0:1288388:0,0,7,6 +chrX 1288398 . C G 555 . AC=2;AF=0.667;AN=3;AS_AltDP=13;AS_QD=28.10;DP=71;ExcessHet=0.0000;FS=0.000;MQ=53.20;QD=45.00;SOR=0.836;VarDP=13 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:58:49:58:.:.:0,49 1|1:0,13:13:39:.:0|1:1288388_G_A:585,39,0:1288388:0,0,7,6 +chrX 1288406 . T C 690 . AC=2;AF=0.667;AN=3;AS_AltDP=16;AS_QD=34.59;DP=74;ExcessHet=0.0000;FS=0.000;MQ=54.54;QD=45.00;SOR=1.244;VarDP=16 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:58:49:58:.:.:0,49 1|1:0,16:16:48:.:0|1:1288388_G_A:720,48,0:1288388:0,0,10,6 +chrX 1288407 . G A 690 . AC=2;AF=0.667;AN=3;AS_AltDP=16;AS_QD=27.99;DP=74;ExcessHet=0.0000;FS=0.000;MQ=54.54;QD=45.00;SOR=1.244;VarDP=16 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:58:49:58:.:.:0,49 1|1:0,16:16:48:.:0|1:1288388_G_A:720,48,0:1288388:0,0,10,6 +chrX 1288409 . A G 735 . AC=2;AF=0.667;AN=3;AS_AltDP=17;AS_QD=31.71;DP=75;ExcessHet=0.0000;FS=0.000;MQ=54.87;QD=45.00;SOR=1.371;VarDP=17 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:58:49:58:.:.:0,49 1|1:0,17:17:51:.:0|1:1288388_G_A:765,51,0:1288388:0,0,11,6 +chrX 1288413 . C T 959 . AC=2;AF=0.667;AN=3;AS_AltDP=22;AS_QD=29.75;DP=80;ExcessHet=0.0000;FS=0.000;MQ=56.08;QD=44.95;SOR=0.874;VarDP=22 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:58:49:58:.:.:0,49 1|1:0,22:22:66:.:0|1:1288388_G_A:989,66,0:1288388:0,0,12,10 +chrX 1288422 . T C 1098 . AC=2;AF=0.667;AN=3;AS_AltDP=26;AS_QD=29.60;DP=84;ExcessHet=0.0000;FS=0.000;MQ=56.70;QD=43.38;SOR=0.846;VarDP=26 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:58:49:58:.:.:0,49 1|1:0,26:26:78:.:0|1:1288388_G_A:1128,78,0:1288388:0,0,14,12 +chrX 1288424 . G A 1098 . AC=2;AF=0.667;AN=3;AS_AltDP=26;AS_QD=29.67;DP=85;ExcessHet=0.0000;FS=0.000;MQ=56.83;QD=43.38;SOR=0.846;VarDP=26 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:58:49:58:.:.:0,49 1|1:0,26:26:78:.:0|1:1288388_G_A:1128,78,0:1288388:0,0,14,12 +chrX 1288437 . A G 2457 . AC=1;AF=0.333;AN=3;AS_AltDP=64;AS_QD=28.36;DP=129;ExcessHet=0.0000;FS=0.000;MQ=59.93;QD=38.86;SOR=0.822;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,64:64:99:.:2487,0:0,0,34,30 0/0:.:61:87:61:0,87,907 +chrX 1288439 . G A 30 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=0.94;BaseQRankSum=-0.146;DP=127;ExcessHet=0.0000;FS=5.000;MQ=59.93;MQRankSum=-0.938;QD=0.938;ReadPosRankSum=-0.034;SOR=1.080;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 1:31,33:64:60:.:60,0:14,17,20,13 0/0:.:61:87:61:0,87,907 +chrX 1288903 . CAT C 2803.97 . AC=3;AF=1.00;AN=3;AS_AltDP=97;AS_QD=21.70;BaseQRankSum=-1.631;DP=139;ExcessHet=0.0000;FS=0.736;MQ=60.00;MQRankSum=0;QD=21.70;ReadPosRankSum=0.724;SOR=0.615;VarDP=131 GT:AD:DP:GQ:PL:SB 1:34,41:75:99:333,0:15,19,18,23 1/1:0,56:56:99:2510,169,0:0,0,27,29 +chrX 1291275 . CTTT C 1838.97 . AC=1;AF=0.333;AN=3;AS_AltDP=43;AS_QD=26.87;DP=71;ExcessHet=0.0000;FS=0.000;MQ=59.57;QD=43.67;SOR=0.941;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,43:43:99:.:1878,0:0,0,19,24 0/0:.:26:23:24:0,23,604 +chrX 1292338 . C T 224 . AC=1;AF=0.333;AN=3;AS_AltDP=39;AS_QD=3.58;BaseQRankSum=0.032;DP=105;ExcessHet=0.0000;FS=6.235;MQ=60.00;MQRankSum=0;QD=3.58;ReadPosRankSum=-0.555;SOR=0.962;VarDP=71 GT:AD:DP:GQ:MIN_DP:PL:SB 1:32,39:71:99:.:254,0:18,14,16,23 0/0:.:40:26:31:0,26,899 +chrX 1292638 . C T 397 . AC=1;AF=0.333;AN=3;AS_AltDP=41;AS_QD=6.10;BaseQRankSum=0.918;DP=104;ExcessHet=0.0000;FS=0.913;MQ=60.00;MQRankSum=0;QD=6.10;ReadPosRankSum=-0.519;SOR=0.836;VarDP=70 GT:AD:DP:GQ:MIN_DP:PL:SB 1:29,41:70:99:.:427,0:16,13,24,17 0/0:.:40:26:31:0,26,899 +chrX 1293221 . G GTTTC 1895.97 . AC=1;AF=0.333;AN=3;AS_AltDP=43;AS_QD=30.65;DP=77;ExcessHet=0.0000;FS=0.000;MQ=59.82;QD=45.00;SOR=0.941;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,43:43:99:.:1935,0:0,0,24,19 0/0:.:40:26:31:0,26,899 +chrX 1293271 . G T 299 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=5.48;BaseQRankSum=-1.014;DP=91;ExcessHet=0.0000;FS=9.328;MQ=55.97;MQRankSum=0.482;QD=5.48;ReadPosRankSum=0.739;SOR=0.388;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 1:26,34:60:99:.:329,0:18,8,16,18 0/0:.:40:26:31:0,26,899 +chrX 1293281 . G C 2660 . AC=1;AF=0.333;AN=3;AS_AltDP=61;AS_QD=30.13;DP=94;ExcessHet=0.0000;FS=0.000;MQ=54.66;QD=44.10;SOR=1.022;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,61:61:99:.:2690,0:0,0,35,26 0/0:.:40:26:31:0,26,899 +chrX 1293364 . A G 2456 . AC=1;AF=0.333;AN=3;AS_AltDP=67;AS_QD=29.24;DP=100;ExcessHet=0.0000;FS=0.000;MQ=50.83;QD=37.10;SOR=0.784;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,67:67:99:.:2486,0:0,0,32,35 0/0:.:40:26:31:0,26,899 +chrX 1294013 . CACCTGGACCCAGTGTAGACAGGAGAAGACTGCACCACCTCCACCTGGACCGAGTGTAGACAGGAGGAGACCCTGCCCCACCTCT C 163.97 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=13.53;DP=61;ExcessHet=0.0000;FS=0.000;MQ=59.79;MQRankSum=1.809;QD=13.53;SOR=0.495;VarDP=15 GT:AD:DP:GQ:MIN_DP:PL:SB 1:4,11:15:99:.:203,0:1,3,4,7 0/0:.:42:44:42:0,44,1051 +chrX 1294564 . C G 1712 . AC=1;AF=0.333;AN=3;AS_AltDP=52;AS_QD=33.50;DP=104;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.50;SOR=1.747;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,52:52:99:.:1742,0:0,0,16,36 0/0:.:54:31:50:0,31,1288 +chrX 1294784 . C G 1548 . AC=1;AF=0.333;AN=3;AS_AltDP=48;AS_QD=32.88;DP=102;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.88;SOR=1.426;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,48:48:99:.:1578,0:0,0,31,17 0/0:.:54:31:50:0,31,1288 +chrX 1294922 . T C 2880 . AC=1;AF=0.333;AN=3;AS_AltDP=81;AS_QD=31.68;DP=122;ExcessHet=0.0000;FS=0.000;MQ=56.39;QD=35.93;SOR=0.995;VarDP=81 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,81:81:99:.:2910,0:0,0,35,46 0/0:.:55:24:39:0,24,996 +chrX 1294960 . G A 1022 . AC=1;AF=0.333;AN=3;AS_AltDP=46;AS_QD=15.94;BaseQRankSum=-0.607;DP=123;ExcessHet=0.0000;FS=2.329;MQ=56.68;MQRankSum=-1.665;QD=15.94;ReadPosRankSum=0.796;SOR=1.071;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 1:20,46:66:99:.:1052,0:8,12,15,31 0/0:.:55:24:39:0,24,996 +chrX 1294977 . G A 881 . AC=1;AF=0.333;AN=3;AS_AltDP=42;AS_QD=14.23;BaseQRankSum=1.497;DP=105;ExcessHet=0.0000;FS=2.364;MQ=59.56;MQRankSum=-1.465;QD=14.23;ReadPosRankSum=0.671;SOR=1.207;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 1:22,42:64:99:.:911,0:9,13,13,29 0/0:.:55:24:39:0,24,996 +chrX 1295062 . T C 407 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=9.50;BaseQRankSum=0.643;DP=90;ExcessHet=0.0000;FS=2.689;MQ=59.01;MQRankSum=-1.486;QD=9.50;ReadPosRankSum=0.277;SOR=0.340;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 1:16,30:46:99:.:437,0:10,6,15,15 0/0:.:55:24:39:0,24,996 +chrX 1295603 . A T 434 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=8.44;BaseQRankSum=-0.945;DP=96;ExcessHet=0.0000;FS=10.292;MQ=58.57;MQRankSum=-0.404;QD=8.44;ReadPosRankSum=1.174;SOR=1.008;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 1:34,21:55:99:.:464,0:22,12,8,13 0/0:.:55:24:39:0,24,996 +chrX 1295832 . C T 1091 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=27.21;DP=69;ExcessHet=0.0000;FS=0.000;MQ=59.44;QD=40.04;SOR=1.061;VarDP=28 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,28:28:99:.:1121,0:0,0,10,7 0/0:.:55:24:39:0,24,996 +chrX 1295837 . T C 185 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=7.96;BaseQRankSum=-0.175;DP=67;ExcessHet=0.0000;FS=0.000;MQ=59.40;MQRankSum=-1.14;QD=7.96;ReadPosRankSum=2.052;SOR=0.476;VarDP=27 GT:AD:DP:GQ:MIN_DP:PL:SB 1:11,16:27:99:.:215,0:7,4,4,3 0/0:.:55:24:39:0,24,996 +chrX 1295861 . C T 49 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=3.29;BaseQRankSum=-2.185;DP=63;ExcessHet=0.0000;FS=0.000;MQ=58.57;MQRankSum=0.139;QD=3.29;ReadPosRankSum=1.949;SOR=0.476;VarDP=24 GT:AD:DP:GQ:MIN_DP:PL:SB 1:11,13:24:79:.:79,0:7,4,4,3 0/0:.:55:24:39:0,24,996 +chrX 1295913 . T C 897 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=30.90;DP=77;ExcessHet=0.0000;FS=0.000;MQ=57.26;QD=30.90;SOR=0.693;VarDP=30 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,30:30:99:.:927,0:0,0,15,15 0/0:.:55:24:39:0,24,996 +chrX 1296223 . G A 31 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=1.42;BaseQRankSum=3.038;DP=82;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=1.42;ReadPosRankSum=0.28;SOR=0.784;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 1:22,21:43:61:.:61,0:11,11,11,10 0/0:.:41:37:37:0,37,967 +chrX 1297068 . T C 40 . AC=1;AF=0.500;AN=2;AS_AltDP=6;AS_QD=4.67;BaseQRankSum=-1.64;DP=39;ExcessHet=0.0000;FS=5.426;MQ=42.16;MQRankSum=1.731;QD=4.67;ReadPosRankSum=0.573;SOR=2.272;VarDP=15 GT:AD:DP:GQ:MIN_DP:PL:SB .:.:21:0:21:0,0 0/1:9,6:15:70:.:70,0,199:4,5,5,1 +chrX 1297798 . C T 337 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=4.77;BaseQRankSum=0.451;DP=93;ExcessHet=0.0000;FS=4.122;MQ=37.78;MQRankSum=0.335;QD=4.77;ReadPosRankSum=1.286;SOR=1.307;VarDP=77 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:15:59:15:.:.:0,59 0|1:62,15:77:99:.:1|0:1297758_A_G:367,0,2302:1297758:37,25,11,4 +chrX 1297842 . G A 317 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=4.39;BaseQRankSum=-1.392;DP=97;ExcessHet=0.0000;FS=2.443;MQ=37.31;MQRankSum=0.813;QD=4.39;ReadPosRankSum=0.764;SOR=1.191;VarDP=79 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:15:59:15:.:.:0,59 0|1:63,16:79:99:.:1|0:1297758_A_G:347,0,2234:1297758:36,27,11,5 +chrX 1297909 . GTCTCCTACCCATGACCCCTGGCAGAACCCTACAGTCCCCTACTCACGACCCCTACAC G 129.97 . AC=1;AF=0.333;AN=3;AS_AltDP=6;AS_QD=18.78;BaseQRankSum=0.566;DP=47;ExcessHet=0.0000;FS=0.000;MQ=34.64;MQRankSum=0.334;QD=18.78;ReadPosRankSum=-0.319;SOR=0.446;VarDP=9 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:15:59:15:0,59 0/1:3,6:9:87:.:169,0,87:0,3,1,5 +chrX 1298376 . A G 40 . AC=1;AF=0.333;AN=3;AS_AltDP=4;AS_QD=11.67;BaseQRankSum=0.623;DP=18;ExcessHet=0.0000;FS=0.000;MQ=35.54;MQRankSum=0.524;QD=11.67;ReadPosRankSum=1.282;SOR=1.329;VarDP=6 GT:AD:DP:GQ:MIN_DP:PL:SB 1:2,4:6:70:.:70,0:2,0,4,0 0/0:.:15:20:12:0,20,371 +chrX 1298615 . CG C 764.97 . AC=1;AF=1.00;AN=1;AS_AltDP=20;AS_QD=22.39;DP=46;ExcessHet=0.0000;FS=0.000;MQ=54.13;QD=40.20;SOR=0.693;VarDP=20 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,20:20:99:.:804,0:0,0,8,8 ./.:.:26:0:26:0,0,0 +chrX 1298617 . ACCCCTACACTCTCCTACCCATGACCCCTGGTGGAACCCTACAGTCCCCTACTCACGACCCCTACACTCTCCTACCCATGACCTCTGGTGGAACCCTACAGTCCCCTACTCACG A,* 1072.97 . AC=1,0;AF=1.00,0.00;AN=1;AS_AltDP=16,12;AS_QD=33.22,0.00;DP=59;ExcessHet=0.0000;FS=0.000;MQ=56.52;QD=39.71;SOR=1.179;VarDP=28 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,16,12:28:99:.:1112,0,180:0,0,11,17 ./.:.:26:0:26:0,0,0,0,0,0 +chrX 1298749 . CATGACCCCCA C 2523.97 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=29.46;BaseQRankSum=-1.048;DP=90;ExcessHet=0.0000;FS=0.000;MQ=57.25;MQRankSum=-1.232;QD=29.46;ReadPosRankSum=0.598;SOR=0.760;VarDP=87 GT:AD:DP:GQ:PL:SB 1:0,37:37:99:1664,0:0,0,13,24 0/1:26,24:50:99:899,0,1004:11,15,12,12 +chrX 1298829 . A G 148 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=3.36;BaseQRankSum=-1.223;DP=111;ExcessHet=0.0000;FS=2.375;MQ=60.00;MQRankSum=0;QD=3.36;ReadPosRankSum=-0.781;SOR=0.368;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 1:23,30:53:99:.:178,0:9,14,15,15 0/0:.:58:98:58:0,98,1514 +chrX 1299044 . A G 2465 . AC=1;AF=0.333;AN=3;AS_AltDP=67;AS_QD=29.21;DP=126;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=37.24;SOR=1.318;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,67:67:99:.:2495,0:0,0,42,25 0/0:.:58:98:58:0,98,1514 +chrX 1299055 . A T 676 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=11.97;BaseQRankSum=0.569;DP=125;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=11.97;ReadPosRankSum=-0.145;SOR=0.638;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,1725 0/1:33,26:59:99:.:706,0,928:16,17,13,13 +chrX 1299729 . G C 2164 . AC=1;AF=0.333;AN=3;AS_AltDP=66;AS_QD=33.24;DP=134;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.24;SOR=0.886;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,66:66:99:.:2194,0:0,0,30,36 0/0:.:67:96:67:0,96,1418 +chrX 1300229 . TAAATA T 1843.97 . AC=2;AF=0.667;AN=3;AS_AltDP=44;AS_QD=29.47;DP=119;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=42.80;SOR=0.784;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:76:65:0,76 1/1:0,44:44:99:.:1883,133,0:0,0,21,23 +chrX 1300356 . A G 1952 . AC=2;AF=0.667;AN=3;AS_AltDP=66;AS_QD=30.03;DP=134;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.03;SOR=0.886;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:76:65:0,76 1/1:0,66:66:99:.:1982,196,0:0,0,30,36 +chrX 1300407 . C T 2026 . AC=2;AF=0.667;AN=3;AS_AltDP=66;AS_QD=30.69;BaseQRankSum=2.115;DP=136;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=30.69;ReadPosRankSum=-1.423;SOR=0.223;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:76:65:0,76 1/1:1,66:67:99:.:2056,191,0:1,0,33,33 +chrX 1300678 . C G 1692 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=33.12;DP=118;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.12;SOR=0.941;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:76:65:0,76 1/1:0,52:52:99:.:1722,156,0:0,0,23,29 +chrX 1301224 . A G 1303 . AC=2;AF=0.667;AN=3;AS_AltDP=45;AS_QD=29.62;DP=112;ExcessHet=0.0000;FS=0.000;MQ=59.96;QD=29.62;SOR=1.154;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:76:65:0,76 1/1:0,45:45:99:.:1333,133,0:0,0,27,18 +chrX 1301331 . CAA C 364.97 . AC=2;AF=0.667;AN=3;AS_AltDP=17;AS_QD=20.20;BaseQRankSum=0.746;DP=98;ExcessHet=0.0000;FS=11.326;MQ=57.74;MQRankSum=1.422;QD=20.20;ReadPosRankSum=-0.482;SOR=1.099;VarDP=20 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:46:14:46:0,14 1/1:3,17:20:9:.:404,9,0:0,3,11,6 +chrX 1301595 . CT C 293.97 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=12.81;BaseQRankSum=-0.334;DP=92;ExcessHet=0.0000;FS=4.682;MQ=58.63;MQRankSum=-0.39;QD=12.81;ReadPosRankSum=-0.423;SOR=1.406;VarDP=26 GT:AD:DP:GQ:MIN_DP:PL:SB 1:5,21:26:99:.:333,0:3,2,7,14 0/0:.:46:20:37:0,20,952 +chrX 1301912 . CTTT C 141.97 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=5.84;BaseQRankSum=0.376;DP=85;ExcessHet=0.0000;FS=1.412;MQ=59.12;MQRankSum=0;QD=5.84;ReadPosRankSum=-0.133;SOR=0.609;VarDP=31 GT:AD:DP:GQ:MIN_DP:PL:SB 1:14,17:31:99:.:181,0:6,8,9,8 0/0:.:46:20:37:0,20,952 +chrX 1302020 . A G 796 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=7.94;BaseQRankSum=1.214;DP=109;ExcessHet=0.0000;FS=0.737;MQ=59.82;MQRankSum=0;QD=7.94;ReadPosRankSum=1.329;SOR=0.846;VarDP=104 GT:AD:DP:GQ:PL:SB 1:24,34:58:99:332,0:13,11,21,13 0/1:27,19:46:99:494,0,676:14,13,9,10 +chrX 1302196 . G A 156 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=2.70;BaseQRankSum=1.957;DP=123;ExcessHet=0.0000;FS=2.001;MQ=59.45;MQRankSum=0.103;QD=2.70;ReadPosRankSum=-1.334;SOR=0.446;VarDP=69 GT:AD:DP:GQ:MIN_DP:PL:SB 1:33,36:69:99:.:186,0:19,14,18,18 0/0:.:52:31:50:0,31,1298 +chrX 1302314 . G C 1014 . AC=2;AF=0.667;AN=3;AS_AltDP=73;AS_QD=8.09;BaseQRankSum=0.697;DP=134;ExcessHet=0.0000;FS=5.357;MQ=59.81;MQRankSum=0;QD=8.09;ReadPosRankSum=-1.085;SOR=0.866;VarDP=129 GT:AD:DP:GQ:PL:SB 1:35,42:77:99:173,0:16,19,22,20 0/1:21,31:52:99:871,0,519:10,11,19,12 +chrX 1303111 . G T 177 . AC=1;AF=0.333;AN=3;AS_AltDP=10;AS_QD=5.91;BaseQRankSum=0.993;DP=100;ExcessHet=0.0000;FS=8.346;MQ=50.30;MQRankSum=-3.258;QD=5.91;ReadPosRankSum=1.973;SOR=1.498;VarDP=35 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,551 0/1:25,10:35:99:.:207,0,627:10,15,7,3 +chrX 1303975 . G A 822 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=14.44;BaseQRankSum=-1.729;DP=131;ExcessHet=0.0000;FS=9.154;MQ=60.00;MQRankSum=0;QD=14.44;ReadPosRankSum=0.382;SOR=1.232;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,551 0/1:26,33:59:99:.:852,0,697:15,11,12,21 +chrX 1304050 . T C 494 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=11.15;BaseQRankSum=0.052;DP=123;ExcessHet=0.0000;FS=20.683;MQ=60.00;MQRankSum=0;QD=11.15;ReadPosRankSum=-0.98;SOR=1.567;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,551 0/1:27,20:47:99:.:524,0,742:19,8,6,14 +chrX 1304146 . T C 317 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=6.55;BaseQRankSum=-0.962;DP=126;ExcessHet=0.0000;FS=14.534;MQ=58.12;MQRankSum=-3.845;QD=6.55;ReadPosRankSum=1.415;SOR=1.980;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,551 0/1:37,16:53:99:.:347,0,1057:22,15,4,12 +chrX 1304331 . T C 48 . AC=1;AF=0.333;AN=3;AS_AltDP=4;AS_QD=2.29;BaseQRankSum=1.106;DP=100;ExcessHet=0.0000;FS=21.478;MQ=59.40;MQRankSum=0.456;QD=2.29;ReadPosRankSum=-2.514;SOR=3.223;VarDP=34 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:99:63:.:.:0,551 0|1:30,4:34:78:.:0|1:1304331_T_C:78,0,1248:1304331:7,23,4,0 +chrX 1304340 . C A 132 . AC=1;AF=0.333;AN=3;AS_AltDP=6;AS_QD=4.50;BaseQRankSum=1.216;DP=102;ExcessHet=0.0000;FS=30.550;MQ=59.43;MQRankSum=0.522;QD=4.50;ReadPosRankSum=-2.57;SOR=3.894;VarDP=36 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:99:63:.:.:0,551 0|1:30,6:36:99:.:0|1:1304331_T_C:162,0,1242:1304331:7,23,6,0 +chrX 1304341 . A G 132 . AC=1;AF=0.333;AN=3;AS_AltDP=6;AS_QD=4.50;BaseQRankSum=0.842;DP=102;ExcessHet=0.0000;FS=30.550;MQ=59.43;MQRankSum=0.522;QD=4.50;ReadPosRankSum=-2.421;SOR=3.894;VarDP=36 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:99:63:.:.:0,551 0|1:30,6:36:99:.:0|1:1304331_T_C:162,0,1242:1304331:7,23,6,0 +chrX 1304353 . TTGCAC T 197.97 . AC=1;AF=0.333;AN=3;AS_AltDP=8;AS_QD=5.78;BaseQRankSum=-0.283;DP=107;ExcessHet=0.0000;FS=38.706;MQ=59.50;MQRankSum=0.554;QD=5.78;ReadPosRankSum=-0.961;SOR=4.396;VarDP=41 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:99:63:.:.:0,551 0|1:33,8:41:99:.:0|1:1304353_TTGCAC_T:237,0,1362:1304353:8,25,8,0 +chrX 1304361 . C CGCCGT 278.97 . AC=1;AF=0.333;AN=3;AS_AltDP=10;AS_QD=7.23;BaseQRankSum=0.911;DP=113;ExcessHet=0.0000;FS=44.291;MQ=59.56;MQRankSum=0.597;QD=7.23;ReadPosRankSum=-1.122;SOR=4.797;VarDP=44 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:99:63:.:.:0,551 0|1:34,10:44:99:.:0|1:1304353_TTGCAC_T:318,0,1387:1304353:9,25,10,0 +chrX 1304644 . GT G 801.97 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=16.17;BaseQRankSum=-1.927;DP=109;ExcessHet=0.0000;FS=4.357;MQ=59.91;MQRankSum=-0.625;QD=16.17;ReadPosRankSum=0.387;SOR=1.387;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 1:16,36:52:99:.:841,0:7,9,11,25 0/0:.:55:88:55:0,88,1275 +chrX 1304652 . TTG T 1006.97 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=21.79;BaseQRankSum=0.738;DP=103;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=21.79;ReadPosRankSum=-1.05;SOR=0.745;VarDP=48 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:53:99:53:.:.:0,1579 0|1:21,27:48:99:.:0|1:1304652_TTG_T:1046,0,780:1304652:8,13,10,17 +chrX 1304666 . T G 1856 . AC=2;AF=0.667;AN=3;AS_AltDP=65;AS_QD=18.67;BaseQRankSum=-0.377;DP=104;ExcessHet=0.0000;FS=2.739;MQ=59.91;MQRankSum=0;QD=18.67;ReadPosRankSum=-0.332;SOR=1.022;VarDP=101 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:18,37:55:99:.:.:817,0:.:10,8,14,23 0|1:18,28:46:99:0|1:1304652_TTG_T:1069,0,672:1304652:7,11,12,16 +chrX 1304917 . C G 3094 . AC=3;AF=1.00;AN=3;AS_AltDP=90;AS_QD=34.71;DP=95;ExcessHet=0.0000;FS=0.000;MQ=59.32;QD=34.71;SOR=1.166;VarDP=90 GT:AD:DP:GQ:PL:SB 1:0,51:51:99:1883,0:0,0,20,31 1/1:0,39:39:99:1241,116,0:0,0,16,23 +chrX 1305124 . G C 1929 . AC=3;AF=1.00;AN=3;AS_AltDP=93;AS_QD=16.19;BaseQRankSum=2.173;DP=123;ExcessHet=0.0000;FS=2.850;MQ=59.33;MQRankSum=1.939;QD=16.19;ReadPosRankSum=2.033;SOR=0.801;VarDP=121 GT:AD:DP:GQ:PL:SB 1:26,36:62:99:278,0:13,13,19,17 1/1:2,57:59:99:1681,141,0:0,2,32,25 +chrX 1305214 . A G 2093 . AC=2;AF=0.667;AN=3;AS_AltDP=69;AS_QD=30.77;DP=123;ExcessHet=0.0000;FS=0.000;MQ=59.61;QD=30.77;SOR=0.910;VarDP=69 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:46:51:0,46 1/1:0,69:69:99:.:2123,206,0:0,0,38,31 +chrX 1305282 . C T 940 . AC=1;AF=0.333;AN=3;AS_AltDP=40;AS_QD=12.13;BaseQRankSum=0.106;DP=134;ExcessHet=0.0000;FS=0.846;MQ=59.60;MQRankSum=0.018;QD=12.13;ReadPosRankSum=-0.876;SOR=0.902;VarDP=80 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:46:51:0,46 0/1:40,40:80:99:.:970,0,955:20,20,22,18 +chrX 1305942 . T C 865 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=14.44;BaseQRankSum=-2.167;DP=118;ExcessHet=0.0000;FS=0.000;MQ=59.83;MQRankSum=-0.817;QD=14.44;ReadPosRankSum=-0.414;SOR=0.656;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:46:51:0,46 0/1:26,36:62:99:.:895,0,659:12,14,17,19 +chrX 1306171 . G C 679 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=14.77;BaseQRankSum=0.215;DP=99;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.77;ReadPosRankSum=0.177;SOR=0.687;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:46:51:0,46 0/1:21,27:48:99:.:709,0,510:11,10,13,14 +chrX 1306855 . A G 502 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=11.08;BaseQRankSum=-2.018;DP=86;ExcessHet=0.0000;FS=2.551;MQ=60.00;MQRankSum=0;QD=11.08;ReadPosRankSum=0.21;SOR=0.506;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 1:17,31:48:99:.:532,0:10,7,15,16 0/0:.:49:25:38:0,25,901 +chrX 1306862 . G GGA 459.97 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=10.18;BaseQRankSum=-0.519;DP=88;ExcessHet=0.0000;FS=2.568;MQ=59.67;MQRankSum=0;QD=10.18;ReadPosRankSum=-0.156;SOR=0.453;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 1:18,31:49:99:.:499,0:11,7,15,16 0/0:.:49:25:38:0,25,901 +chrX 1306955 . T G 3286 . AC=3;AF=1.00;AN=3;AS_AltDP=107;AS_QD=30.70;BaseQRankSum=1.216;DP=109;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=30.70;ReadPosRankSum=-1.242;SOR=0.361;VarDP=108 GT:AD:DP:GQ:PL:SB 1:1,59:60:99:1744,0:0,1,27,32 1/1:0,48:48:99:1572,144,0:0,0,19,29 +chrX 1307018 . G A 90 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=2.31;BaseQRankSum=1.838;DP=121;ExcessHet=0.0000;FS=1.035;MQ=60.00;MQRankSum=0;QD=2.31;ReadPosRankSum=-0.082;SOR=0.551;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 1:25,27:52:99:.:120,0:11,14,13,14 0/0:.:66:99:66:0,115,1541 +chrX 1307319 . T C 4615 . AC=3;AF=1.00;AN=3;AS_AltDP=129;AS_QD=29.76;DP=133;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=36.01;SOR=1.241;VarDP=129 GT:AD:DP:GQ:PL:SB 1:0,62:62:99:2401,0:0,0,37,25 1/1:0,67:67:99:2244,201,0:0,0,42,25 +chrX 1307344 . C T 304 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=5.22;BaseQRankSum=0.406;DP=117;ExcessHet=0.0000;FS=3.477;MQ=60.00;MQRankSum=0;QD=5.22;ReadPosRankSum=0.632;SOR=1.078;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 1:27,37:64:99:.:334,0:13,14,22,15 0/0:.:52:44:52:0,44,1231 +chrX 1307388 . T C,TC 526 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=3,30;AS_QD=0.00,12.09;BaseQRankSum=-0.181;DP=104;ExcessHet=0.0000;FS=8.445;MQ=59.91;MQRankSum=-0.653;QD=11.35;ReadPosRankSum=0.213;SOR=0.507;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 2:16,3,30:49:99:.:556,671,0:5,11,18,15 0/0:.:52:44:52:0,44,1231,44,1231,1231 +chrX 1307397 . G T 526 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=11.35;BaseQRankSum=-0.042;DP=102;ExcessHet=0.0000;FS=2.600;MQ=59.90;MQRankSum=-0.72;QD=11.35;ReadPosRankSum=0.712;SOR=0.349;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 1:18,31:49:99:.:556,0:6,12,14,17 0/0:.:52:44:52:0,44,1231 +chrX 1307522 . T TCGAC 500.97 . AC=1;AF=0.333;AN=3;AS_AltDP=42;AS_QD=7.61;BaseQRankSum=1.76;DP=150;ExcessHet=0.0000;FS=6.386;MQ=59.63;MQRankSum=-0.802;QD=7.61;ReadPosRankSum=-1.33;SOR=0.264;VarDP=71 GT:AD:DP:GQ:MIN_DP:PL:SB 1:29,42:71:99:.:540,0:19,10,21,21 0/0:.:78:99:78:0,120,1800 +chrX 1307523 . T TGATTAGATGAAGCCCACCATTCTCCTTTATACCTTC 501.97 . AC=1;AF=0.333;AN=3;AS_AltDP=42;AS_QD=7.62;BaseQRankSum=1.22;DP=148;ExcessHet=0.0000;FS=6.386;MQ=59.63;MQRankSum=-0.802;QD=7.62;ReadPosRankSum=-2.578;SOR=0.264;VarDP=71 GT:AD:DP:GQ:MIN_DP:PL:SB 1:29,42:71:99:.:541,0:19,10,21,21 0/0:.:77:0:77:0,0,1116 +chrX 1307792 . T C 3186 . AC=3;AF=1.00;AN=3;AS_AltDP=72;AS_QD=30.40;DP=75;ExcessHet=0.0000;FS=0.000;MQ=54.68;QD=44.67;SOR=0.986;VarDP=72 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,16:16:99:.:.:712,0:.:0,0,1,3 1|1:0,56:56:99:0|1:1307792_T_C:2504,169,0:1307792:0,0,25,31 +chrX 1307793 . TTTTAGACCTTTGACTGATTAGATGAGGCCTACCCTTCTCCC *,T,CTTTAGACCTTTGACTGATTAGATGAGGCCTACCCTTCTCCC 3546 . AC=0,0,3;AF=0.00,0.00,1.00;AN=3;AS_AltDP=0,0,66;AS_QD=31.47,32.56,22.34;DP=81;ExcessHet=0.0000;FS=0.000;MQ=54.37;QD=54.18;SOR=0.957;VarDP=66 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 3:0,0,0,10:10:99:.:.:1072,532,919,0:.:0,0,4,6 3|3:0,0,0,56:56:99:0|1:1307792_T_C:2504,2504,2504,2504,2504,2504,169,169,169,0:1307792:0,0,25,31 +chrX 1307797 . A *,G 3337 . AC=0,3;AF=0.00,1.00;AN=3;AS_AltDP=0,61;AS_QD=27.49,34.31;DP=75;ExcessHet=0.0000;FS=0.000;MQ=54.43;QD=55.20;SOR=0.941;VarDP=61 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 2:0,0,6:6:99:.:.:892,262,0:.:0,0,2,4 2|2:0,0,55:55:99:0|1:1307792_T_C:2475,2475,2475,166,166,0:1307792:0,0,25,30 +chrX 1307804 . T *,C 2977 . AC=0,3;AF=0.00,1.00;AN=3;AS_AltDP=0,65;AS_QD=29.85,32.01;DP=79;ExcessHet=0.0000;FS=0.000;MQ=54.37;QD=46.26;SOR=1.000;VarDP=65 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 2:0,0,7:7:99:.:.:397,826,0:.:0,0,2,5 2|2:0,0,58:58:99:0|1:1307792_T_C:2610,2610,2610,175,175,0:1307792:0,0,26,32 +chrX 1307819 . G *,A 3474 . AC=0,3;AF=0.00,1.00;AN=3;AS_AltDP=0,67;AS_QD=32.32,29.17;DP=78;ExcessHet=0.0000;FS=0.000;MQ=54.12;QD=52.30;SOR=0.723;VarDP=67 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 2:0,0,10:10:99:.:.:939,381,0:.:0,0,4,6 2|2:0,0,57:57:99:0|1:1307792_T_C:2565,2565,2565,172,172,0:1307792:0,0,29,28 +chrX 1307823 . T *,C 3296 . AC=0,3;AF=0.00,1.00;AN=3;AS_AltDP=0,66;AS_QD=33.16,35.26;DP=74;ExcessHet=0.0000;FS=0.000;MQ=53.79;QD=50.39;SOR=0.693;VarDP=66 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 2:0,0,10:10:99:.:.:806,382,0:.:0,0,4,6 2|2:0,0,56:56:99:0|1:1307792_T_C:2520,2520,2520,169,169,0:1307792:0,0,29,27 +chrX 1307824 . AC *,A 3286.97 . AC=0,3;AF=0.00,1.00;AN=3;AS_AltDP=0,66;AS_QD=29.20,35.04;DP=74;ExcessHet=0.0000;FS=0.000;MQ=53.79;QD=50.39;SOR=0.693;VarDP=66 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 2:0,0,10:10:99:.:.:806,382,0:.:0,0,4,6 2|2:0,0,56:56:99:0|1:1307792_T_C:2520,2520,2520,169,169,0:1307792:0,0,29,27 +chrX 1307829 . TC *,T 3372.97 . AC=0,3;AF=0.00,1.00;AN=3;AS_AltDP=0,70;AS_QD=24.24,31.52;DP=76;ExcessHet=0.0000;FS=0.000;MQ=53.89;QD=48.74;SOR=0.750;VarDP=70 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 2:0,0,10:10:99:.:.:717,383,0:.:0,0,4,6 2|2:0,0,60:60:99:0|1:1307792_T_C:2695,2695,2695,181,181,0:1307792:0,0,30,30 +chrX 1307834 . C *,CTT 3368.97 . AC=0,3;AF=0.00,1.00;AN=3;AS_AltDP=0,70;AS_QD=31.45,33.92;DP=78;ExcessHet=0.0000;FS=0.000;MQ=54.05;QD=48.69;SOR=0.811;VarDP=70 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 2:0,0,10:10:99:.:.:717,383,0:.:0,0,4,6 2|2:0,0,60:60:99:0|1:1307792_T_C:2691,2691,2691,181,181,0:1307792:0,0,29,31 +chrX 1307995 . C T 1268 . AC=3;AF=1.00;AN=3;AS_AltDP=59;AS_QD=17.31;BaseQRankSum=2.412;DP=82;ExcessHet=0.0000;FS=10.104;MQ=60.00;MQRankSum=0;QD=17.31;ReadPosRankSum=-0.568;SOR=0.147;VarDP=75 GT:AD:DP:GQ:PL:SB 1:15,23:38:99:157,0:12,3,14,9 1/1:1,36:37:99:1141,100,0:0,1,16,20 +chrX 1308189 . C T 243 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=4.33;BaseQRankSum=-1.072;DP=112;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=4.33;ReadPosRankSum=-0.424;SOR=0.664;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 1:27,36:63:99:.:273,0:11,16,15,21 0/0:.:49:34:47:0,34,1186 +chrX 1308288 . G A 1725 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=32.50;BaseQRankSum=2.916;DP=109;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=32.50;ReadPosRankSum=-0.417;SOR=0.271;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:53:99:53:0,129 1/1:1,53:54:99:.:1755,152,0:1,0,28,25 +chrX 1308713 . G A 105 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=1.96;BaseQRankSum=2.638;DP=131;ExcessHet=0.0000;FS=5.275;MQ=60.00;MQRankSum=0;QD=1.96;ReadPosRankSum=0.78;SOR=1.409;VarDP=69 GT:AD:DP:GQ:MIN_DP:PL:SB 1:34,35:69:99:.:135,0:22,12,27,8 0/0:.:60:99:60:0,116,1578 +chrX 1308965 . T C 4011 . AC=3;AF=1.00;AN=3;AS_AltDP=133;AS_QD=30.38;DP=137;ExcessHet=0.0000;FS=0.000;MQ=59.63;QD=30.38;SOR=0.708;VarDP=133 GT:AD:DP:GQ:PL:SB 1:0,72:72:99:2106,0:0,0,31,41 1/1:0,61:61:99:1935,183,0:0,0,36,25 +chrX 1309183 . C T 2037 . AC=3;AF=1.00;AN=3;AS_AltDP=84;AS_QD=18.79;BaseQRankSum=2.417;DP=116;ExcessHet=0.0000;FS=3.008;MQ=60.00;MQRankSum=0;QD=18.79;ReadPosRankSum=0.933;SOR=0.853;VarDP=110 GT:AD:DP:GQ:PL:SB 1:26,25:51:86:86,0:12,14,15,10 1/1:0,59:59:99:1981,177,0:0,0,32,27 +chrX 1310574 . A G 111 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=2.66;BaseQRankSum=0.233;DP=117;ExcessHet=0.0000;FS=9.971;MQ=59.34;MQRankSum=1.288;QD=2.66;ReadPosRankSum=1.502;SOR=1.064;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 1:24,29:53:99:.:141,0:15,9,11,18 0/0:.:61:60:61:0,60,1170 +chrX 1310641 . G C 304 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=8.35;BaseQRankSum=-0.73;DP=103;ExcessHet=0.0000;FS=4.837;MQ=59.80;MQRankSum=-0.723;QD=8.35;ReadPosRankSum=0.91;SOR=0.958;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 1:15,25:40:99:.:334,0:9,6,10,15 0/0:.:61:60:61:0,60,1170 +chrX 1310858 . G C 203 . AC=1;AF=0.333;AN=3;AS_AltDP=41;AS_QD=3.19;BaseQRankSum=-1.699;DP=134;ExcessHet=0.0000;FS=1.966;MQ=60.00;MQRankSum=0;QD=3.19;ReadPosRankSum=1.502;SOR=0.430;VarDP=73 GT:AD:DP:GQ:MIN_DP:PL:SB 1:32,41:73:99:.:233,0:13,19,20,21 0/0:.:61:60:61:0,60,1170 +chrX 1311121 . C T 101 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=2.34;BaseQRankSum=0.63;DP=120;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=2.34;ReadPosRankSum=0.238;SOR=0.698;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 1:27,29:56:99:.:131,0:13,14,15,14 0/0:.:61:60:61:0,60,1170 +chrX 1311187 . G T 125 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=2.35;BaseQRankSum=0.853;DP=128;ExcessHet=0.0000;FS=10.444;MQ=60.00;MQRankSum=0;QD=2.35;ReadPosRankSum=-1.69;SOR=0.717;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 1:31,35:66:99:.:155,0:11,20,20,15 0/0:.:61:60:61:0,60,1170 +chrX 1311440 . TG T 115.97 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=3.16;BaseQRankSum=0.23;DP=114;ExcessHet=0.0000;FS=10.441;MQ=59.91;MQRankSum=1.149;QD=3.16;ReadPosRankSum=0.392;SOR=1.732;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 1:22,27:49:99:.:155,0:10,12,19,8 0/0:.:61:60:61:0,60,1170 +chrX 1312229 . A G 2305 . AC=2;AF=0.667;AN=3;AS_AltDP=78;AS_QD=22.89;BaseQRankSum=-0.291;DP=105;ExcessHet=0.0000;FS=0.897;MQ=60.00;MQRankSum=0;QD=22.89;ReadPosRankSum=0.08;SOR=0.539;VarDP=102 GT:AD:DP:GQ:PL:SB 1:0,57:57:99:1810,0:0,0,24,33 0/1:24,21:45:99:525,0,645:9,15,9,12 +chrX 1312428 . G C 949 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=8.98;BaseQRankSum=-0.122;DP=111;ExcessHet=0.0000;FS=0.711;MQ=60.00;MQRankSum=0;QD=8.98;ReadPosRankSum=0.212;SOR=0.784;VarDP=109 GT:AD:DP:GQ:PL:SB 1:23,34:57:99:307,0:12,11,12,22 0/1:27,25:52:99:672,0,736:12,15,15,10 +chrX 1312643 . A G 745 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=7.83;BaseQRankSum=0.502;DP=106;ExcessHet=0.0000;FS=9.745;MQ=59.84;MQRankSum=0;QD=7.83;ReadPosRankSum=0.466;SOR=1.565;VarDP=99 GT:AD:DP:GQ:PL:SB 1:21,31:52:99:242,0:12,9,22,9 0/1:27,20:47:99:533,0,757:12,15,12,8 +chrX 1312966 . T C 883 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=14.49;BaseQRankSum=-0.182;DP=122;ExcessHet=0.0000;FS=5.014;MQ=60.00;MQRankSum=0;QD=14.49;ReadPosRankSum=0.103;SOR=0.734;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:15:59:0,15 0/1:29,34:63:99:.:913,0,779:17,12,15,19 +chrX 1313274 . A T 3000 . AC=2;AF=0.667;AN=3;AS_AltDP=101;AS_QD=22.95;BaseQRankSum=-0.477;DP=136;ExcessHet=0.0000;FS=1.662;MQ=59.63;MQRankSum=0.644;QD=22.95;ReadPosRankSum=-1.091;SOR=0.532;VarDP=132 GT:AD:DP:GQ:PL:SB 1:0,70:70:99:2260,0:0,0,39,31 0/1:31,31:62:99:770,0,829:19,12,18,13 +chrX 1313555 . CA C 2144.97 . AC=2;AF=0.667;AN=3;AS_AltDP=82;AS_QD=20.22;BaseQRankSum=0.113;DP=121;ExcessHet=0.0000;FS=0.846;MQ=59.82;MQRankSum=0;QD=20.22;ReadPosRankSum=-0.864;SOR=0.599;VarDP=108 GT:AD:DP:GQ:PL:SB 1:0,54:54:99:1543,0:0,0,25,29 0/1:26,28:54:99:641,0,577:10,16,9,19 +chrX 1313709 . C T 1984 . AC=2;AF=0.667;AN=3;AS_AltDP=70;AS_QD=21.43;BaseQRankSum=-1.108;DP=95;ExcessHet=0.0000;FS=0.893;MQ=59.06;MQRankSum=-0.684;QD=21.43;ReadPosRankSum=0.455;SOR=0.560;VarDP=94 GT:AD:DP:GQ:PL:SB 1:0,49:49:99:1548,0:0,0,25,24 0/1:24,21:45:99:466,0,622:10,14,7,14 +chrX 1313847 . G A 540 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=14.25;BaseQRankSum=0.562;DP=107;ExcessHet=0.0000;FS=12.051;MQ=60.00;MQRankSum=0;QD=14.25;ReadPosRankSum=-0.854;SOR=0.615;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,189 0/1:19,21:40:99:.:570,0,488:5,14,12,9 +chrX 1314000 . G A 776 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=13.90;BaseQRankSum=0.827;DP=123;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.90;ReadPosRankSum=0.35;SOR=0.826;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,189 0/1:28,30:58:99:.:806,0,704:14,14,16,14 +chrX 1314217 . CCCAACCCCA C 325.97 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=7.93;BaseQRankSum=3.304;DP=96;ExcessHet=0.0000;FS=8.742;MQ=57.47;MQRankSum=1.315;QD=7.93;ReadPosRankSum=-0.712;SOR=1.117;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 1:19,27:46:99:.:365,0:12,7,10,17 0/0:.:47:28:44:0,28,1261 +chrX 1314228 . TGCACCTGCCCAACCCCACTGCACCTGCCCAACCCCACTGCGCCTGCCCAACCCCACTGCATCTGCCCAACCACTCTGTGCCTGCCC T 185.97 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=4.59;BaseQRankSum=2.237;DP=99;ExcessHet=0.0000;FS=8.049;MQ=56.90;MQRankSum=1.453;QD=4.59;ReadPosRankSum=-0.179;SOR=1.159;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 1:22,27:49:99:.:225,0:13,9,10,17 0/0:.:45:99:45:0,108,1360 +chrX 1314259 . ACC *,A 695.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=0,20;AS_QD=0.00,20.42;BaseQRankSum=0.427;DP=92;ExcessHet=0.0000;FS=1.761;MQ=55.99;MQRankSum=-2.518;QD=20.42;ReadPosRankSum=-1.099;SOR=0.919;VarDP=36 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:22,27,0:49:99:.:.:225,0,1191:.:13,9,10,17 0|2:16,0,20:36:99:0|1:1314259_ACC_A:735,783,1415,0,632,572:1314259:6,10,11,9 +chrX 1314264 . ACTGCGCCTGCCCAACCC *,A 679.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=0,20;AS_QD=0.00,17.54;BaseQRankSum=0.209;DP=95;ExcessHet=0.0000;FS=1.720;MQ=56.29;MQRankSum=-2.993;QD=17.54;ReadPosRankSum=-1.135;SOR=0.884;VarDP=41 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:22,27,0:49:99:.:.:225,0,1191:.:13,9,10,17 0|2:21,0,20:41:99:0|1:1314259_ACC_A:719,782,1624,0,842,782:1314259:9,12,11,9 +chrX 1314285 . T *,A 688 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=0,19;AS_QD=0.00,18.89;BaseQRankSum=-0.076;DP=92;ExcessHet=0.0000;FS=0.802;MQ=55.99;MQRankSum=-2.916;QD=18.89;ReadPosRankSum=2.206;SOR=0.811;VarDP=38 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:22,27,0:49:99:.:.:225,0,1191:.:13,9,10,17 0|2:19,0,19:38:99:0|1:1314259_ACC_A:718,775,1546,0,772,714:1314259:6,13,10,9 +chrX 1314319 . A G 836 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=27.94;BaseQRankSum=1.315;DP=69;ExcessHet=0.0000;FS=0.000;MQ=57.04;MQRankSum=1.673;QD=27.94;ReadPosRankSum=1.906;SOR=0.566;VarDP=31 GT:AD:DP:GQ:MIN_DP:PL:SB 1:6,25:31:99:.:866,0:2,4,10,15 0/0:.:36:48:36:0,48,720 +chrX 1314333 . C T 153 . AC=1;AF=0.333;AN=3;AS_AltDP=6;AS_QD=6.31;BaseQRankSum=0.14;DP=57;ExcessHet=0.0000;FS=1.862;MQ=57.73;MQRankSum=-2.648;QD=6.31;ReadPosRankSum=-2.364;SOR=1.289;VarDP=29 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:28:90:28:.:.:0,90 0|1:23,6:29:99:.:0|1:1314259_ACC_A:183,0,929:1314259:11,12,4,2 +chrX 1314338 . C G 975 . AC=2;AF=0.667;AN=3;AS_AltDP=28;AS_QD=17.63;BaseQRankSum=2.385;DP=60;ExcessHet=0.0000;FS=2.277;MQ=57.72;MQRankSum=-0.764;QD=17.63;ReadPosRankSum=1.82;SOR=1.106;VarDP=57 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:5,24:29:99:.:.:909,0:.:2,3,8,16 0|1:24,4:28:96:0|1:1314259_ACC_A:96,0,977:1314259:11,13,2,2 +chrX 1314482 . A G,ACCCAACCCCACTGTGCCTGCTCAACCGCACTGCACCTGCCCAATCCCACTGCACCTG 810 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=21,7;AS_QD=13.14,20.21;BaseQRankSum=2.499;DP=67;ExcessHet=0.0000;FS=29.074;MQ=56.94;MQRankSum=-0.321;QD=17.14;ReadPosRankSum=0.578;SOR=1.405;VarDP=49 GT:AD:DP:GQ:PL:SB 1:15,21,0:36:99:274,0,725:11,4,4,17 0/2:6,0,7:13:99:566,288,780,0,203,150:6,0,5,2 +chrX 1314864 . CCAACCGCACTGCACCTGCCCAACCACACTGAACCTGCT C 447.97 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=31.31;DP=36;ExcessHet=0.0000;FS=0.000;MQ=50.76;QD=44.27;SOR=2.494;VarDP=11 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,11:11:99:.:487,0:0,0,9,2 0/0:.:25:34:23:0,34,700 +chrX 1315022 . A G 1012 . AC=1;AF=1.00;AN=1;AS_AltDP=33;AS_QD=31.58;DP=97;ExcessHet=0.0000;FS=0.000;MQ=59.18;QD=31.58;SOR=0.880;VarDP=33 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,33:33:99:.:1042,0:0,0,18,15 ./.:.:62:0:62:0,0,0 +chrX 1315210 . A C 2777 . AC=2;AF=0.667;AN=3;AS_AltDP=91;AS_QD=23.79;BaseQRankSum=2.242;DP=123;ExcessHet=0.0000;FS=13.658;MQ=60.00;MQRankSum=0;QD=23.79;ReadPosRankSum=0.329;SOR=1.539;VarDP=118 GT:AD:DP:GQ:PL:SB 1:1,57:58:99:1815,0:1,0,19,38 0/1:26,34:60:99:992,0,703:14,12,11,23 +chrX 1315546 . C G 902 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=7.58;BaseQRankSum=0.886;DP=128;ExcessHet=0.0000;FS=4.330;MQ=60.00;MQRankSum=0;QD=7.58;ReadPosRankSum=1.034;SOR=0.851;VarDP=123 GT:AD:DP:GQ:PL:SB 1:26,27:53:25:25,0:15,11,13,14 0/1:36,34:70:99:907,0,916:18,18,14,20 +chrX 1315585 . T G 2847 . AC=2;AF=0.667;AN=3;AS_AltDP=94;AS_QD=23.39;BaseQRankSum=0.179;DP=125;ExcessHet=0.0000;FS=0.797;MQ=60.00;MQRankSum=0;QD=23.39;ReadPosRankSum=0.233;SOR=0.723;VarDP=123 GT:AD:DP:GQ:PL:SB 1:0,61:61:99:1968,0:0,0,31,30 0/1:29,33:62:99:909,0,773:15,14,14,19 +chrX 1315770 . AATAGATAGATAGATAG A 915.97 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=18.37;BaseQRankSum=-1.324;DP=141;ExcessHet=0.0000;FS=3.925;MQ=60.00;MQRankSum=0;QD=18.37;ReadPosRankSum=0.815;SOR=0.723;VarDP=52 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:67:99:67:.:.:0,614 0|1:27,25:52:99:.:0|1:1315770_AATAGATAGATAGATAG_A:955,0,1044:1315770:11,16,14,11 +chrX 1315800 . TAGATAGATAGA T 1176.97 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=18.15;BaseQRankSum=-0.069;DP=136;ExcessHet=0.0000;FS=3.333;MQ=60.00;MQRankSum=0;QD=18.15;ReadPosRankSum=-1.733;SOR=1.078;VarDP=67 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:67:99:67:.:.:0,614 0|1:35,32:67:99:.:1|0:1315770_AATAGATAGATAGATAG_A:1216,0,1329:1315770:18,17,13,19 +chrX 1315821 . TAGATAGATG T 1140.97 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=17.10;BaseQRankSum=2.238;DP=130;ExcessHet=0.0000;FS=3.261;MQ=60.00;MQRankSum=0;QD=17.10;ReadPosRankSum=-1.349;SOR=0.746;VarDP=69 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:61:99:61:.:.:0,1215 0|1:38,31:69:99:.:1|0:1315770_AATAGATAGATAGATAG_A:1180,0,1476:1315770:21,17,14,17 +chrX 1315856 . A G 961 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=7.80;BaseQRankSum=-0.433;DP=130;ExcessHet=0.0000;FS=1.403;MQ=60.00;MQRankSum=0;QD=7.80;ReadPosRankSum=1.042;SOR=0.558;VarDP=127 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:30,34:64:45:.:.:45,0:.:18,12,17,17 0|1:37,26:63:99:1|0:1315770_AATAGATAGATAGATAG_A:946,0,1398:1315770:18,19,13,13 +chrX 1315953 . TGATA T 475.97 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=13.92;BaseQRankSum=0.474;DP=111;ExcessHet=0.0000;FS=3.029;MQ=60.00;MQRankSum=0;QD=13.92;ReadPosRankSum=-0.812;SOR=1.289;VarDP=37 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:69:99:69:0,107 0/1:23,14:37:99:.:515,0,821:12,11,5,9 +chrX 1316001 . CAGAT C 3072.97 . AC=2;AF=0.667;AN=3;AS_AltDP=72;AS_QD=34.97;BaseQRankSum=1.255;DP=99;ExcessHet=0.0000;FS=2.258;MQ=60.00;MQRankSum=0;QD=34.97;ReadPosRankSum=1.773;SOR=0.856;VarDP=89 GT:AD:DP:GQ:PL:SB 1:0,60:60:99:2659,0:0,0,36,24 0/1:17,12:29:99:453,0,652:8,9,4,8 +chrX 1316031 . G GATAC 615.97 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=19.85;BaseQRankSum=0.027;DP=99;ExcessHet=0.0000;FS=1.377;MQ=60.00;MQRankSum=0;QD=19.85;ReadPosRankSum=0.018;SOR=0.405;VarDP=33 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,1530 0/1:16,17:33:99:.:655,0,610:6,10,8,9 +chrX 1316059 . A AATAGATAGATAGATAGATAG 933.97 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=9.63;BaseQRankSum=0.189;DP=116;ExcessHet=0.0000;FS=0.745;MQ=60.00;MQRankSum=0;QD=9.63;ReadPosRankSum=0.014;SOR=0.578;VarDP=101 GT:AD:DP:GQ:PL:SB 1:29,32:61:99:129,0:16,13,17,15 0/1:18,22:40:99:844,0,670:6,12,10,12 +chrX 1316199 . A G 1121 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=9.84;BaseQRankSum=-0.844;DP=119;ExcessHet=0.0000;FS=4.584;MQ=59.94;MQRankSum=0;QD=9.84;ReadPosRankSum=-0.578;SOR=1.179;VarDP=117 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:32,40:72:99:.:.:375,0:.:15,17,16,24 0|1:23,22:45:99:0|1:1316199_A_G:776,0,868:1316199:11,12,7,15 +chrX 1316222 . TAGATAGATGATAGATGAC T 953.97 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=7.76;BaseQRankSum=1.813;DP=129;ExcessHet=0.0000;FS=0.661;MQ=59.82;MQRankSum=-0.922;QD=7.76;ReadPosRankSum=0.533;SOR=0.770;VarDP=128 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:36,40:76:99:.:.:244,0:.:15,21,19,21 0|1:29,23:52:99:0|1:1316199_A_G:749,0,1153:1316199:12,17,6,17 +chrX 1316265 . GATA G 927.97 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=7.86;BaseQRankSum=1.85;DP=125;ExcessHet=0.0000;FS=0.000;MQ=59.69;MQRankSum=-0.28;QD=7.86;ReadPosRankSum=0.247;SOR=0.674;VarDP=123 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:32,39:71:99:.:.:270,0:.:14,18,19,20 0|1:31,21:52:99:0|1:1316199_A_G:697,0,1242:1316199:13,18,7,14 +chrX 1316269 . GATAGA G,GTAGA 880.97 . AC=0,2;AF=0.00,0.667;AN=3;AS_AltDP=0,35;AS_QD=1.84,9.48;BaseQRankSum=1.58;DP=120;ExcessHet=0.0000;FS=3.911;MQ=59.67;MQRankSum=0.697;QD=9.48;ReadPosRankSum=1.199;SOR=0.728;VarDP=97 GT:AD:DP:GQ:PL:SB 2:31,0,22:53:99:269,1012,0:15,16,13,9 0/2:31,0,13:44:99:651,537,1851,0,1268,1227:13,18,6,7 +chrX 1316303 . T C,TAGAC,TAGATAGAC 597 . AC=1,0,0;AF=0.333,0.00,0.00;AN=3;AS_AltDP=13,0,0;AS_QD=16.08,3.69,3.19;BaseQRankSum=1.612;DP=113;ExcessHet=0.0000;FS=0.000;MQ=59.17;MQRankSum=0.761;QD=16.08;ReadPosRankSum=2.25;SOR=0.684;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:6:59:0,6,6,6 0/1:26,13,0,0:39:99:.:627,0,1163,531,963,1601,544,1119,1592,1764:12,14,6,7 +chrX 1316609 . G A 2751 . AC=2;AF=0.667;AN=3;AS_AltDP=89;AS_QD=23.77;BaseQRankSum=0.107;DP=125;ExcessHet=0.0000;FS=7.060;MQ=60.00;MQRankSum=0;QD=23.77;ReadPosRankSum=0.531;SOR=1.131;VarDP=117 GT:AD:DP:GQ:PL:SB 1:0,70:70:99:2302,0:0,0,42,28 0/1:28,19:47:99:479,0,757:13,15,12,7 +chrX 1316694 . T C 2949 . AC=2;AF=0.667;AN=3;AS_AltDP=96;AS_QD=23.46;BaseQRankSum=-0.249;DP=131;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=23.46;ReadPosRankSum=1.496;SOR=0.636;VarDP=127 GT:AD:DP:GQ:PL:SB 1:0,68:68:99:2272,0:0,0,39,29 0/1:31,28:59:99:707,0,826:18,13,15,13 +chrX 1316735 . C T 670 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=12.07;BaseQRankSum=-0.911;DP=134;ExcessHet=0.0000;FS=2.244;MQ=60.00;MQRankSum=0;QD=12.07;ReadPosRankSum=0.53;SOR=0.395;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:73:99:73:0,450 0/1:31,27:58:99:.:700,0,858:19,12,14,13 +chrX 1316970 . G A 3315 . AC=2;AF=0.667;AN=3;AS_AltDP=105;AS_QD=24.24;BaseQRankSum=1.191;DP=144;ExcessHet=0.0000;FS=6.475;MQ=58.97;MQRankSum=-0.214;QD=24.24;ReadPosRankSum=1.382;SOR=1.311;VarDP=138 GT:AD:DP:GQ:PL:SB 1:1,74:75:99:2506,0:0,1,49,25 0/1:32,31:63:99:839,0,818:17,15,18,13 +chrX 1317246 . C CTT,CTTT,CTTTT,CT 1448.97 . AC=0,2,0,1;AF=0.00,0.667,0.00,0.333;AN=3;AS_AltDP=5,21,3,5;AS_QD=35.77,28.59,24.99,33.77;DP=108;ExcessHet=0.0000;FS=0.000;MQ=57.69;QD=43.76;SOR=1.609;VarDP=34 GT:AD:DP:GQ:PL:SB 2:0,5,5,3,0:13:89:866,179,0,89,331:0,0,3,10 2/4:0,0,16,0,5:21:88:622,569,552,104,124,88,569,552,124,552,392,380,0,380,332:0,0,8,13 +chrX 1317342 . C T 447 . AC=2;AF=0.667;AN=3;AS_AltDP=38;AS_QD=6.19;BaseQRankSum=2.067;DP=81;ExcessHet=0.0000;FS=7.597;MQ=59.94;MQRankSum=0;QD=6.19;ReadPosRankSum=0.09;SOR=0.847;VarDP=77 GT:AD:DP:GQ:PL:SB 1:22,22:44:20:20,0:14,8,9,13 0/1:17,16:33:99:457,0,437:9,8,7,9 +chrX 1317573 . A T,AT 1182 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=48,18;AS_QD=11.50,11.75;BaseQRankSum=0.555;DP=108;ExcessHet=0.0000;FS=4.536;MQ=59.42;MQRankSum=-1.374;QD=13.17;ReadPosRankSum=-0.979;SOR=1.027;VarDP=92 GT:AD:DP:GQ:PL:SB 2:0,21,18:39:99:517,361,0:0,0,19,20 0/1:26,27,0:53:99:695,0,623,772,704,1475:14,12,8,19 +chrX 1318095 . TC T 416.97 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=9.91;BaseQRankSum=-0.569;DP=87;ExcessHet=0.0000;FS=4.427;MQ=59.13;MQRankSum=0;QD=9.91;ReadPosRankSum=-1.628;SOR=0.894;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 1:17,29:46:99:.:456,0:10,7,12,17 0/0:.:36:21:35:0,21,968 +chrX 1318155 . A AT 431.97 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=10.47;BaseQRankSum=1.149;DP=96;ExcessHet=0.0000;FS=1.206;MQ=60.00;MQRankSum=0;QD=10.47;ReadPosRankSum=-0.784;SOR=0.965;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:43:52:36:0,52 0/1:22,23:45:99:.:471,0,447:8,14,7,16 +chrX 1318463 . G A 774 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=7.96;BaseQRankSum=0.589;DP=106;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=7.96;ReadPosRankSum=0.8;SOR=0.772;VarDP=101 GT:AD:DP:GQ:PL:SB 1:23,31:54:99:211,0:10,13,13,18 0/1:25,22:47:99:593,0,677:9,16,7,15 +chrX 1318847 . G A 84 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=3.45;BaseQRankSum=-2.262;DP=79;ExcessHet=0.0000;FS=0.000;MQ=59.49;MQRankSum=-0.797;QD=3.45;ReadPosRankSum=0.51;SOR=0.602;VarDP=33 GT:AD:DP:GQ:MIN_DP:PL:SB 1:14,19:33:99:.:114,0:4,10,6,13 0/0:.:46:72:46:0,72,1115 +chrX 1318916 . C CA 359.97 . AC=2;AF=0.667;AN=3;AS_AltDP=39;AS_QD=5.05;BaseQRankSum=-0.795;DP=91;ExcessHet=0.0000;FS=0.906;MQ=59.55;MQRankSum=0;QD=5.05;ReadPosRankSum=-0.451;SOR=0.889;VarDP=79 GT:AD:DP:GQ:PL:SB 1:18,21:39:41:41,0:4,14,6,15 0/1:22,18:40:99:358,0,465:10,12,6,12 +chrX 1318955 . G A 426 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=10.13;BaseQRankSum=2.416;DP=95;ExcessHet=0.0000;FS=6.529;MQ=60.00;MQRankSum=0;QD=10.13;ReadPosRankSum=2.412;SOR=1.739;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:35:50:0,35 0/1:28,17:45:99:.:456,0,763:14,14,5,12 +chrX 1319153 . G A 970 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=17.54;BaseQRankSum=0.409;DP=112;ExcessHet=0.0000;FS=3.871;MQ=59.50;MQRankSum=-0.09;QD=17.54;ReadPosRankSum=0.482;SOR=1.383;VarDP=57 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:56:35:50:.:.:0,35 0|1:30,27:57:99:.:0|1:1319153_G_A:1000,0,1157:1319153:17,13,19,8 +chrX 1319156 . T C 967 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=17.19;BaseQRankSum=-1.678;DP=111;ExcessHet=0.0000;FS=3.815;MQ=59.49;MQRankSum=-0.124;QD=17.19;ReadPosRankSum=0.85;SOR=1.303;VarDP=58 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:56:35:50:.:.:0,35 0|1:31,27:58:99:.:0|1:1319153_G_A:997,0,1199:1319153:18,13,19,8 +chrX 1319328 . C T 681 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=6.71;BaseQRankSum=1.69;DP=111;ExcessHet=0.0000;FS=4.727;MQ=60.00;MQRankSum=0;QD=6.71;ReadPosRankSum=1.749;SOR=1.136;VarDP=106 GT:AD:DP:GQ:PL:SB 1:25,24:49:6:6,0:10,15,14,10 0/1:29,28:57:99:705,0,724:17,12,17,11 +chrX 1319714 . GT G 661.97 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=14.31;BaseQRankSum=1.528;DP=107;ExcessHet=0.0000;FS=1.101;MQ=59.71;MQRankSum=0.907;QD=14.31;ReadPosRankSum=0.073;SOR=0.671;VarDP=49 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:51:49:49:.:.:0,49 0|1:28,21:49:99:.:0|1:1319714_GT_G:701,0,1019:1319714:15,13,10,11 +chrX 1319727 . T G 668 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=13.96;BaseQRankSum=-1.316;DP=102;ExcessHet=0.0000;FS=1.107;MQ=59.68;MQRankSum=0.891;QD=13.96;ReadPosRankSum=0.118;SOR=0.625;VarDP=50 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:51:49:49:.:.:0,49 0|1:29,21:50:99:.:0|1:1319714_GT_G:698,0,1049:1319714:16,13,10,11 +chrX 1319918 . T C 86 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=2.42;BaseQRankSum=-0.559;DP=105;ExcessHet=0.0000;FS=3.965;MQ=60.00;MQRankSum=0;QD=2.42;ReadPosRankSum=0.506;SOR=0.473;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 1:23,25:48:99:.:116,0:14,9,12,13 0/0:.:56:63:56:0,63,1281 +chrX 1320499 . C CT 1277.97 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=16.46;BaseQRankSum=0.308;DP=110;ExcessHet=0.0000;FS=3.558;MQ=60.00;MQRankSum=0;QD=16.46;ReadPosRankSum=-0.685;SOR=1.244;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,46:46:99:1126,0:0,0,30,16 0/1:22,12:34:99:191,0,449:12,10,8,4 +chrX 1320664 . ATT A 170.97 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=6.36;BaseQRankSum=0.252;DP=121;ExcessHet=0.0000;FS=5.691;MQ=59.72;MQRankSum=-1.148;QD=6.36;ReadPosRankSum=-0.774;SOR=0.477;VarDP=33 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,855 0/1:22,11:33:99:.:210,0,496:7,15,6,5 +chrX 1321196 . A G 736 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=15.02;BaseQRankSum=0.106;DP=115;ExcessHet=0.0000;FS=0.000;MQ=59.93;MQRankSum=-0.831;QD=15.02;ReadPosRankSum=-1.208;SOR=0.643;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,855 0/1:22,29:51:99:.:766,0,547:8,14,11,18 +chrX 1321256 . T C 665 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=13.63;BaseQRankSum=-0.976;DP=117;ExcessHet=0.0000;FS=2.407;MQ=59.93;MQRankSum=-0.904;QD=13.63;ReadPosRankSum=0.934;SOR=1.079;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,855 0/1:24,27:51:99:.:695,0,631:10,14,9,18 +chrX 1321309 . A G 647 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=13.82;BaseQRankSum=-1.341;DP=115;ExcessHet=0.0000;FS=0.000;MQ=59.93;MQRankSum=-0.9;QD=13.82;ReadPosRankSum=0.481;SOR=0.600;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,855 0/1:23,26:49:99:.:677,0,607:10,13,12,14 +chrX 1321378 . T A 725 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=12.80;BaseQRankSum=-1.333;DP=125;ExcessHet=0.0000;FS=7.160;MQ=59.30;MQRankSum=-2.0;QD=12.80;ReadPosRankSum=0.834;SOR=0.462;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,855 0/1:29,30:59:99:.:755,0,771:19,10,14,16 +chrX 1321455 . T G 627 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=14.60;BaseQRankSum=1.186;DP=107;ExcessHet=0.0000;FS=2.549;MQ=59.02;MQRankSum=-2.189;QD=14.60;ReadPosRankSum=-1.502;SOR=0.547;VarDP=45 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:99:62:.:.:0,855 0|1:24,21:45:99:.:0|1:1321455_T_G:657,0,798:1321455:14,10,10,11 +chrX 1321470 . A AAAAT 578.97 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=13.73;BaseQRankSum=1.703;DP=111;ExcessHet=0.0000;FS=2.683;MQ=59.48;MQRankSum=-2.046;QD=13.73;ReadPosRankSum=-0.162;SOR=0.317;VarDP=45 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:99:62:.:.:0,855 0|1:26,19:45:99:.:0|1:1321455_T_G:618,0,905:1321455:17,9,10,9 +chrX 1321537 . T G 542 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=12.43;BaseQRankSum=-1.304;DP=109;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=12.43;ReadPosRankSum=0.891;SOR=0.826;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,855 0/1:22,24:46:99:.:572,0,588:14,8,16,8 +chrX 1321574 . C CA 442.97 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=10.48;BaseQRankSum=-0.673;DP=118;ExcessHet=0.0000;FS=6.349;MQ=60.00;MQRankSum=0;QD=10.48;ReadPosRankSum=-0.134;SOR=0.335;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,855 0/1:19,27:46:99:.:482,0,314:13,6,13,14 +chrX 1321653 . G A 656 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=11.63;BaseQRankSum=2.079;DP=123;ExcessHet=0.0000;FS=3.582;MQ=60.00;MQRankSum=0;QD=11.63;ReadPosRankSum=-0.359;SOR=0.639;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,855 0/1:33,26:59:99:.:686,0,810:19,14,12,14 +chrX 1321858 . G A 2842 . AC=2;AF=0.667;AN=3;AS_AltDP=91;AS_QD=22.44;BaseQRankSum=2.959;DP=133;ExcessHet=0.0000;FS=0.723;MQ=60.00;MQRankSum=0;QD=22.44;ReadPosRankSum=1.482;SOR=0.798;VarDP=128 GT:AD:DP:GQ:PL:SB 1:1,68:69:99:2259,0:0,1,33,35 0/1:36,23:59:99:613,0,919:18,18,9,14 +chrX 1321891 . G A 2685 . AC=2;AF=0.667;AN=3;AS_AltDP=88;AS_QD=22.44;BaseQRankSum=-0.354;DP=125;ExcessHet=0.0000;FS=2.670;MQ=60.00;MQRankSum=0;QD=22.44;ReadPosRankSum=1.16;SOR=0.701;VarDP=121 GT:AD:DP:GQ:PL:SB 1:0,69:69:99:2241,0:0,0,35,34 0/1:33,19:52:99:474,0,949:18,15,6,13 +chrX 1322062 . G A 581 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=11.98;BaseQRankSum=1.273;DP=117;ExcessHet=0.0000;FS=13.641;MQ=60.00;MQRankSum=0;QD=11.98;ReadPosRankSum=0.01;SOR=0.755;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,1623 0/1:29,22:51:99:.:611,0,830:21,8,9,13 +chrX 1322095 . T C 2262 . AC=2;AF=0.667;AN=3;AS_AltDP=78;AS_QD=23.15;BaseQRankSum=-2.557;DP=101;ExcessHet=0.0000;FS=0.943;MQ=59.92;MQRankSum=-0.873;QD=23.15;ReadPosRankSum=-0.474;SOR=0.931;VarDP=99 GT:AD:DP:GQ:PL:SB 1:0,53:53:99:1711,0:0,0,27,26 0/1:21,25:46:99:581,0,584:11,10,18,7 +chrX 1322099 . A ATTATTTAT,ATTATTTATTTAT 2142.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=17,40;AS_QD=28.04,28.06;BaseQRankSum=-0.815;DP=106;ExcessHet=0.0000;FS=0.000;MQ=59.76;MQRankSum=-1.072;QD=30.31;ReadPosRankSum=-1.93;SOR=0.677;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,17,15:32:52:1179,0,52:0,0,16,16 0/2:15,0,25:40:99:1003,1050,1681,0,631,556:8,7,14,11 +chrX 1322169 . A G 2410 . AC=2;AF=0.667;AN=3;AS_AltDP=75;AS_QD=24.16;BaseQRankSum=-2.33;DP=101;ExcessHet=0.0000;FS=11.693;MQ=60.00;MQRankSum=0;QD=24.16;ReadPosRankSum=2.083;SOR=0.420;VarDP=101 GT:AD:DP:GQ:PL:SB 1:0,48:48:99:1795,0:0,0,23,25 0/1:26,27:53:99:645,0,726:18,8,12,15 +chrX 1322271 . AT A 562.97 . AC=2;AF=0.667;AN=3;AS_AltDP=41;AS_QD=7.92;BaseQRankSum=1.072;DP=102;ExcessHet=0.0000;FS=0.000;MQ=59.96;MQRankSum=0;QD=7.92;ReadPosRankSum=1.686;SOR=0.691;VarDP=76 GT:AD:DP:GQ:PL:SB 1:12,23:35:99:252,0:6,6,12,11 0/1:23,18:41:99:350,0,460:12,11,8,10 +chrX 1322439 . GTTTTTTT G,GTTTTTTTT 637.97 . AC=0,2;AF=0.00,0.667;AN=3;AS_AltDP=19,39;AS_QD=10.27,14.72;BaseQRankSum=-2.289;DP=105;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=10.42;ReadPosRankSum=-1.745;SOR=0.977;VarDP=65 GT:AD:DP:GQ:PL:SB 2:0,19,19:38:99:389,122,0:0,0,16,22 0/2:7,0,20:27:46:288,309,411,0,103,46:3,4,6,14 +chrX 1322599 . T C 913 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=8.50;BaseQRankSum=-0.988;DP=115;ExcessHet=0.0000;FS=1.551;MQ=60.00;MQRankSum=0;QD=8.50;ReadPosRankSum=0.237;SOR=0.897;VarDP=111 GT:AD:DP:GQ:PL:SB 1:25,37:62:99:346,0:15,10,23,14 0/1:25,24:49:99:597,0,654:13,12,14,10 +chrX 1322668 . T C 1051 . AC=2;AF=0.667;AN=3;AS_AltDP=64;AS_QD=9.74;BaseQRankSum=2.29;DP=117;ExcessHet=0.0000;FS=2.455;MQ=60.00;MQRankSum=0;QD=9.74;ReadPosRankSum=1.018;SOR=0.492;VarDP=111 GT:AD:DP:GQ:PL:SB 1:29,42:71:99:516,0:15,14,22,20 0/1:18,22:40:99:565,0,496:5,13,9,13 +chrX 1322905 . A G 2928 . AC=2;AF=0.667;AN=3;AS_AltDP=101;AS_QD=23.66;BaseQRankSum=-0.604;DP=143;ExcessHet=0.0000;FS=0.000;MQ=59.63;MQRankSum=0;QD=23.66;ReadPosRankSum=-0.186;SOR=0.758;VarDP=125 GT:AD:DP:GQ:PL:SB 1:1,61:62:99:1903,0:0,1,36,25 0/1:23,40:63:99:1055,0,517:14,9,24,16 +chrX 1323158 . T TATAAAATAAAATAAAATAAA,TATAAAATAAAATAAAATAAAATAAA,TATAAAATAAAATAAAATAAAATACA 1156.97 . AC=1,1,0;AF=0.333,0.333,0.00;AN=3;AS_AltDP=26,19,0;AS_QD=7.21,10.42,0.63;BaseQRankSum=-0.471;DP=125;ExcessHet=0.0000;FS=0.000;MQ=59.95;MQRankSum=0;QD=13.14;ReadPosRankSum=-0.917;SOR=0.659;VarDP=91 GT:AD:DP:GQ:PL:SB 1:14,26,0,0:40:99:519,0,1144,1144:9,5,15,11 0/2:32,0,19,0:51:99:677,725,2060,0,1342,1279,648,2009,1343,2007:19,13,12,7 +chrX 1323236 . G A 608 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=7.98;BaseQRankSum=0.572;DP=151;ExcessHet=0.0000;FS=6.109;MQ=60.00;MQRankSum=0;QD=7.98;ReadPosRankSum=-0.182;SOR=1.379;VarDP=80 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:71:99:71:0,342 0/1:52,28:80:99:.:638,0,1341:28,24,19,9 +chrX 1323290 . G C 514 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=8.00;BaseQRankSum=-0.381;DP=141;ExcessHet=0.0000;FS=2.165;MQ=60.00;MQRankSum=0;QD=8.00;ReadPosRankSum=0.324;SOR=1.121;VarDP=68 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:71:99:71:0,342 0/1:45,23:68:99:.:544,0,1280:23,22,14,9 +chrX 1323317 . C T 676 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=10.23;BaseQRankSum=0.516;DP=142;ExcessHet=0.0000;FS=0.936;MQ=60.00;MQRankSum=0;QD=10.23;ReadPosRankSum=-0.544;SOR=0.939;VarDP=69 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:71:99:71:0,342 0/1:41,28:69:99:.:706,0,1106:21,20,16,12 +chrX 1323752 . C T 856 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=15.54;BaseQRankSum=0.91;DP=128;ExcessHet=0.0000;FS=1.010;MQ=58.78;MQRankSum=-2.367;QD=15.54;ReadPosRankSum=-0.016;SOR=0.880;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:71:99:71:0,342 0/1:24,33:57:99:.:886,0,558:12,12,18,15 +chrX 1323780 . A C 4035 . AC=3;AF=1.00;AN=3;AS_AltDP=135;AS_QD=30.11;DP=136;ExcessHet=0.0000;FS=0.000;MQ=58.04;QD=30.11;SOR=0.769;VarDP=135 GT:AD:DP:GQ:PL:SB 1:0,76:76:99:2349,0:0,0,38,38 1/1:0,59:59:99:1716,174,0:0,0,32,27 +chrX 1323982 . C G 1285 . AC=2;AF=0.667;AN=3;AS_AltDP=41;AS_QD=32.07;DP=86;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.07;SOR=1.075;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:44:15:44:0,15 1/1:0,41:41:99:.:1315,122,0:0,0,17,24 +chrX 1324013 . CA C 836.97 . AC=2;AF=0.667;AN=3;AS_AltDP=34;AS_QD=25.03;DP=87;ExcessHet=0.0000;FS=0.000;MQ=59.87;MQRankSum=6.002;QD=25.03;SOR=0.330;VarDP=35 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:47:38:43:0,38 1/1:1,34:35:80:.:876,80,0:0,1,15,19 +chrX 1324413 . G GGAAA 1585.97 . AC=2;AF=0.667;AN=3;AS_AltDP=38;AS_QD=30.09;BaseQRankSum=0.35;DP=68;ExcessHet=0.0000;FS=4.324;MQ=59.68;MQRankSum=0;QD=30.09;ReadPosRankSum=-0.46;SOR=1.061;VarDP=54 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:1337,0:0,0,18,12 0/1:16,8:24:99:288,0,636:7,9,5,3 +chrX 1324452 . AAAAG A 1557.97 . AC=2;AF=0.667;AN=3;AS_AltDP=38;AS_QD=31.94;BaseQRankSum=0.41;DP=63;ExcessHet=0.0000;FS=10.874;MQ=60.00;MQRankSum=0;QD=31.94;ReadPosRankSum=0.462;SOR=2.780;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:1269,0:0,0,25,4 0/1:12,9:21:99:328,0,477:8,4,9,0 +chrX 1324516 . A G 1091 . AC=2;AF=0.667;AN=3;AS_AltDP=36;AS_QD=24.37;BaseQRankSum=2.327;DP=48;ExcessHet=0.0000;FS=4.075;MQ=59.70;MQRankSum=0;QD=24.37;ReadPosRankSum=-0.141;SOR=2.636;VarDP=46 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:802,0:0,0,24,1 0/1:10,11:21:99:319,0,242:9,1,11,0 +chrX 1324560 . A G 1677 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=25.10;BaseQRankSum=-0.849;DP=71;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=25.10;ReadPosRankSum=0.103;SOR=0.602;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,42:42:99:1323,0:0,0,27,15 0/1:12,14:26:99:384,0,339:8,4,8,6 +chrX 1326083 . G C 49 . AC=1;AF=0.333;AN=3;AS_AltDP=39;AS_QD=1.05;BaseQRankSum=-0.16;DP=96;ExcessHet=0.0000;FS=6.007;MQ=59.94;MQRankSum=1.068;QD=1.05;ReadPosRankSum=-1.697;SOR=1.179;VarDP=75 GT:AD:DP:GQ:MIN_DP:PL:SB 1:36,39:75:79:.:79,0:17,19,24,15 0/0:.:19:32:17:0,32,520 +chrX 1326122 . C T 95 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=1.69;BaseQRankSum=1.682;DP=93;ExcessHet=0.0000;FS=14.781;MQ=59.72;MQRankSum=0.038;QD=1.69;ReadPosRankSum=1.444;SOR=1.808;VarDP=74 GT:AD:DP:GQ:MIN_DP:PL:SB 1:36,38:74:99:.:125,0:16,20,27,11 0/0:.:19:32:17:0,32,520 +chrX 1326321 . A G 1034 . AC=2;AF=0.667;AN=3;AS_AltDP=71;AS_QD=7.82;BaseQRankSum=-0.644;DP=139;ExcessHet=0.0000;FS=0.640;MQ=59.73;MQRankSum=1.15;QD=7.82;ReadPosRankSum=1.325;SOR=0.792;VarDP=136 GT:AD:DP:GQ:PL:SB 1:28,35:63:99:168,0:15,13,15,20 0/1:37,36:73:99:896,0,967:14,23,15,21 +chrX 1326404 . T A 362 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=7.26;BaseQRankSum=1.514;DP=122;ExcessHet=0.0000;FS=2.346;MQ=59.91;MQRankSum=1.198;QD=7.26;ReadPosRankSum=0.951;SOR=0.991;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 1:23,31:54:99:.:392,0:12,11,13,18 0/0:.:67:50:67:0,50,1578 +chrX 1326599 . C T 913 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=17.79;BaseQRankSum=-0.688;DP=100;ExcessHet=0.0000;FS=1.124;MQ=59.52;MQRankSum=0.54;QD=17.79;ReadPosRankSum=0.301;SOR=0.479;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:46:45:0,46 0/1:18,35:53:99:.:943,0,407:11,7,19,16 +chrX 1326725 . C CA 712.97 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=15.35;BaseQRankSum=0.566;DP=103;ExcessHet=0.0000;FS=2.528;MQ=60.00;MQRankSum=0;QD=15.35;ReadPosRankSum=-1.473;SOR=1.115;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:46:45:0,46 0/1:18,31:49:99:.:752,0,392:8,10,11,20 +chrX 1326782 . T G 886 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=13.67;BaseQRankSum=0.071;DP=114;ExcessHet=0.0000;FS=3.465;MQ=60.00;MQRankSum=0;QD=13.67;ReadPosRankSum=2.625;SOR=0.384;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:46:45:0,46 0/1:32,35:67:99:.:916,0,841:23,9,22,13 +chrX 1327118 . T G 1091 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=16.01;BaseQRankSum=-0.404;DP=115;ExcessHet=0.0000;FS=3.263;MQ=60.00;MQRankSum=0;QD=16.01;ReadPosRankSum=-1.174;SOR=1.146;VarDP=70 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:46:45:.:.:0,46 0|1:39,31:70:99:.:0|1:1327118_T_G:1121,0,1525:1327118:20,19,19,12 +chrX 1327120 . T C 1091 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=16.01;BaseQRankSum=-1.245;DP=117;ExcessHet=0.0000;FS=3.263;MQ=60.00;MQRankSum=0;QD=16.01;ReadPosRankSum=-0.976;SOR=1.146;VarDP=70 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:46:45:.:.:0,46 0|1:39,31:70:99:.:0|1:1327118_T_G:1121,0,1525:1327118:20,19,19,12 +chrX 1327296 . A G 1037 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=9.70;BaseQRankSum=0.715;DP=120;ExcessHet=0.0000;FS=1.552;MQ=58.89;MQRankSum=1.854;QD=9.70;ReadPosRankSum=-0.443;SOR=0.544;VarDP=110 GT:AD:DP:GQ:PL:SB 1:25,33:58:99:503,0:10,15,16,17 0/1:29,23:52:99:564,0,773:10,19,7,16 +chrX 1327504 . T C 349 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=6.53;BaseQRankSum=-2.695;DP=108;ExcessHet=0.0000;FS=5.743;MQ=59.50;MQRankSum=1.138;QD=6.53;ReadPosRankSum=-0.429;SOR=0.232;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 1:21,37:58:99:.:379,0:15,6,20,17 0/0:.:50:20:46:0,20,1120 +chrX 1327541 . A G 296 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=5.09;BaseQRankSum=-1.655;DP=113;ExcessHet=0.0000;FS=11.284;MQ=59.09;MQRankSum=0.541;QD=5.09;ReadPosRankSum=-0.506;SOR=0.541;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 1:26,38:64:99:.:326,0:18,8,17,21 0/0:.:50:20:46:0,20,1120 +chrX 1327603 . A G 197 . AC=1;AF=0.333;AN=3;AS_AltDP=39;AS_QD=3.24;BaseQRankSum=-1.407;DP=120;ExcessHet=0.0000;FS=10.405;MQ=59.56;MQRankSum=-0.265;QD=3.24;ReadPosRankSum=0.574;SOR=1.485;VarDP=70 GT:AD:DP:GQ:MIN_DP:PL:SB 1:31,39:70:99:.:227,0:17,14,13,26 0/0:.:50:20:46:0,20,1120 +chrX 1327902 . G A 36 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=1.05;BaseQRankSum=3.133;DP=111;ExcessHet=0.0000;FS=3.442;MQ=60.00;MQRankSum=0;QD=1.05;ReadPosRankSum=-0.454;SOR=0.482;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 1:32,31:63:66:.:66,0:13,19,16,15 0/0:.:50:20:46:0,20,1120 +chrX 1328389 . A AT 772.97 . AC=3;AF=1.00;AN=3;AS_AltDP=34;AS_QD=22.56;BaseQRankSum=0.79;DP=45;ExcessHet=0.0000;FS=0.000;MQ=56.69;MQRankSum=1.464;QD=22.56;ReadPosRankSum=0.731;SOR=0.560;VarDP=36 GT:AD:DP:GQ:PL:SB 1:2,17:19:99:395,0:0,2,5,12 1/1:0,17:17:50:417,50,0:0,0,4,13 +chrX 1328494 . C G 564 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=23.76;BaseQRankSum=-1.559;DP=67;ExcessHet=0.0000;FS=0.000;MQ=59.15;MQRankSum=1.417;QD=23.76;ReadPosRankSum=0.085;SOR=0.999;VarDP=25 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:38:55:38:.:.:0,55 0|1:9,16:25:99:.:0|1:1328494_C_G:594,0,328:1328494:5,4,10,6 +chrX 1328533 . A AT 634.97 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=22.47;BaseQRankSum=-1.453;DP=71;ExcessHet=0.0000;FS=1.630;MQ=58.87;MQRankSum=-0.083;QD=22.47;ReadPosRankSum=-0.582;SOR=1.236;VarDP=30 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:38:55:38:.:.:0,55 0|1:11,19:30:99:.:0|1:1328494_C_G:674,0,375:1328494:7,4,14,5 +chrX 1328606 . ATT A 69.97 . AC=1;AF=0.333;AN=3;AS_AltDP=5;AS_QD=5.19;BaseQRankSum=1.354;DP=44;ExcessHet=0.0000;FS=2.172;MQ=59.77;MQRankSum=0.671;QD=5.19;ReadPosRankSum=-1.475;SOR=1.609;VarDP=21 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:27:36:19:0,36 0/1:16,5:21:99:.:109,0,436:9,7,4,1 +chrX 1328673 . C T 332 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=12.93;BaseQRankSum=-0.482;DP=49;ExcessHet=0.0000;FS=5.904;MQ=59.14;MQRankSum=-0.929;QD=12.93;ReadPosRankSum=1.08;SOR=1.144;VarDP=28 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:27:36:19:0,36 0/1:14,14:28:99:.:362,0,369:9,5,5,9 +chrX 1329260 . G C 243 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=4.96;BaseQRankSum=1.523;DP=111;ExcessHet=0.0000;FS=3.704;MQ=60.00;MQRankSum=0;QD=4.96;ReadPosRankSum=-0.017;SOR=1.214;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 1:24,31:55:99:.:273,0:12,12,19,12 0/0:.:55:83:55:0,83,1241 +chrX 1329315 . C T 149 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=3.51;BaseQRankSum=0.964;DP=108;ExcessHet=0.0000;FS=5.732;MQ=60.00;MQRankSum=0;QD=3.51;ReadPosRankSum=-0.256;SOR=1.053;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 1:23,28:51:99:.:179,0:10,13,17,11 0/0:.:55:83:55:0,83,1241 +chrX 1329394 . C T 877 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=16.49;BaseQRankSum=0.919;DP=115;ExcessHet=0.0000;FS=5.479;MQ=60.00;MQRankSum=0;QD=16.49;ReadPosRankSum=0.085;SOR=0.978;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:57:99:57:0,1555 0/1:23,32:55:99:.:907,0,584:13,10,13,19 +chrX 1329480 . T C 273 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=5.41;BaseQRankSum=-0.561;DP=93;ExcessHet=0.0000;FS=5.291;MQ=59.80;MQRankSum=0.154;QD=5.41;ReadPosRankSum=0.511;SOR=0.648;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 1:25,31:56:99:.:303,0:15,10,14,17 0/0:.:49:34:36:0,34,873 +chrX 1329481 . G T 273 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=5.41;BaseQRankSum=-0.058;DP=95;ExcessHet=0.0000;FS=5.291;MQ=59.81;MQRankSum=0.154;QD=5.41;ReadPosRankSum=0.544;SOR=0.648;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 1:25,31:56:99:.:303,0:15,10,14,17 0/0:.:49:34:36:0,34,873 +chrX 1329511 . G A 410 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=8.15;BaseQRankSum=-0.057;DP=91;ExcessHet=0.0000;FS=10.113;MQ=59.79;MQRankSum=0.269;QD=8.15;ReadPosRankSum=0.194;SOR=1.354;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 1:22,32:54:99:.:440,0:13,9,11,21 0/0:.:49:34:36:0,34,873 +chrX 1329519 . A G 549 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=10.34;BaseQRankSum=-2.373;DP=94;ExcessHet=0.0000;FS=10.366;MQ=59.80;MQRankSum=0.368;QD=10.34;ReadPosRankSum=-0.702;SOR=1.596;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 1:21,35:56:99:.:579,0:12,9,11,24 0/0:.:49:34:36:0,34,873 +chrX 1329598 . C T 106 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=2.39;BaseQRankSum=1.048;DP=96;ExcessHet=0.0000;FS=5.959;MQ=59.49;MQRankSum=0.015;QD=2.39;ReadPosRankSum=0.136;SOR=1.702;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 1:27,30:57:99:.:136,0:11,16,7,23 0/0:.:49:34:36:0,34,873 +chrX 1331066 . T G 302 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=5.63;BaseQRankSum=-0.806;DP=99;ExcessHet=0.0000;FS=12.163;MQ=59.65;MQRankSum=1.747;QD=5.63;ReadPosRankSum=0.208;SOR=1.844;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 1:24,35:59:99:.:332,0:13,11,10,25 0/0:.:49:34:36:0,34,873 +chrX 1332318 . G A 6431 . AC=3;AF=1.00;AN=3;AS_AltDP=183;AS_QD=31.67;DP=190;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=35.31;SOR=1.483;VarDP=183 GT:AD:DP:GQ:PL:SB 1:0,115:115:99:4309,0:0,0,81,34 1/1:0,68:68:99:2152,203,0:0,0,38,30 +chrX 1332429 . G C 2060 . AC=1;AF=0.333;AN=3;AS_AltDP=83;AS_QD=17.86;BaseQRankSum=1.619;DP=178;ExcessHet=0.0000;FS=8.290;MQ=59.87;MQRankSum=0.197;QD=17.86;ReadPosRankSum=-0.188;SOR=1.473;VarDP=117 GT:AD:DP:GQ:MIN_DP:PL:SB 1:34,83:117:99:.:2090,0:17,17,54,29 0/0:.:60:99:60:0,117,1800 +chrX 1332539 . GT G 1325.97 . AC=1;AF=0.333;AN=3;AS_AltDP=76;AS_QD=12.41;BaseQRankSum=-0.231;DP=176;ExcessHet=0.0000;FS=2.723;MQ=58.20;MQRankSum=-3.01;QD=12.41;ReadPosRankSum=-1.573;SOR=0.439;VarDP=110 GT:AD:DP:GQ:MIN_DP:PL:SB 1:34,76:110:99:.:1365,0:13,21,35,41 0/0:.:60:99:60:0,117,1800 +chrX 1332806 . C CT 2489.97 . AC=3;AF=1.00;AN=3;AS_AltDP=108;AS_QD=23.42;DP=130;ExcessHet=0.0000;FS=0.000;MQ=59.45;QD=23.42;SOR=0.769;VarDP=108 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,55:55:99:.:.:1209,0:.:0,0,23,32 1|1:0,53:53:99:0|1:1332806_C_CT:1320,158,0:1332806:0,0,33,20 +chrX 1333057 . GC G 4915.97 . AC=3;AF=1.00;AN=3;AS_AltDP=139;AS_QD=28.12;DP=150;ExcessHet=0.0000;FS=0.000;MQ=59.78;QD=35.65;SOR=0.767;VarDP=139 GT:AD:DP:GQ:PL:SB 1:0,89:89:99:3185,0:0,0,48,41 1/1:0,50:50:99:1770,150,0:0,0,24,26 +chrX 1333260 . A AT,ATT 854.97 . AC=0,2;AF=0.00,0.667;AN=3;AS_AltDP=1,26;AS_QD=32.99,34.38;DP=133;ExcessHet=0.0000;FS=0.000;MQ=59.61;QD=33.11;SOR=0.922;VarDP=27 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:92:99:92:0,515,515 2/2:0,1,26:27:56:.:894,634,558,84,56,0:0,0,15,12 +chrX 1333674 . G A 595 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=11.79;BaseQRankSum=0.513;DP=150;ExcessHet=0.0000;FS=1.047;MQ=59.69;MQRankSum=-0.981;QD=11.79;ReadPosRankSum=-0.721;SOR=0.790;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:92:99:92:0,515 0/1:27,26:53:99:.:625,0,605:14,13,12,14 +chrX 1333900 . C T 3294 . AC=2;AF=0.667;AN=3;AS_AltDP=99;AS_QD=26.17;BaseQRankSum=-0.162;DP=134;ExcessHet=0.0000;FS=3.964;MQ=59.70;MQRankSum=0.846;QD=26.17;ReadPosRankSum=0.992;SOR=0.839;VarDP=127 GT:AD:DP:GQ:PL:SB 1:0,81:81:99:2881,0:0,0,43,38 0/1:28,18:46:99:443,0,766:13,15,12,6 +chrX 1334132 . C G,T 71 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=34,34;AS_QD=0.70,1.53;BaseQRankSum=1.59;DP=152;ExcessHet=0.0000;FS=0.808;MQ=59.69;MQRankSum=0.579;QD=1.01;ReadPosRankSum=0.31;SOR=0.880;VarDP=100 GT:AD:DP:GQ:MIN_DP:PL:SB 2:32,34,34:100:55:.:101,55,0:16,16,37,31 0/0:.:48:57:48:0,57,1149,57,1149,1149 +chrX 1334150 . A C,T 609 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=2,23;AS_QD=0.00,12.78;BaseQRankSum=0.628;DP=168;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=12.29;ReadPosRankSum=-1.576;SOR=0.576;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:116:99:116:0,1078,1078 0/2:27,2,23:52:99:.:639,691,1478,0,764,723:16,11,14,11 +chrX 1334253 . G C 1494 . AC=1;AF=0.333;AN=3;AS_AltDP=67;AS_QD=15.24;BaseQRankSum=-0.609;DP=172;ExcessHet=0.0000;FS=0.000;MQ=59.95;MQRankSum=1.446;QD=15.24;ReadPosRankSum=2.729;SOR=0.801;VarDP=100 GT:AD:DP:GQ:MIN_DP:PL:SB 1:33,67:100:99:.:1524,0:12,21,23,44 0/0:.:66:74:66:0,74,1800 +chrX 1334262 . C T 1587 . AC=1;AF=0.333;AN=3;AS_AltDP=66;AS_QD=17.02;BaseQRankSum=-2.276;DP=166;ExcessHet=0.0000;FS=0.000;MQ=59.95;MQRankSum=1.531;QD=17.02;ReadPosRankSum=1.898;SOR=0.779;VarDP=95 GT:AD:DP:GQ:MIN_DP:PL:SB 1:29,66:95:99:.:1617,0:11,18,24,42 0/0:.:66:74:66:0,74,1800 +chrX 1334314 . G A 1245 . AC=1;AF=0.333;AN=3;AS_AltDP=62;AS_QD=14.66;BaseQRankSum=1.102;DP=158;ExcessHet=0.0000;FS=0.900;MQ=60.00;MQRankSum=0;QD=14.66;ReadPosRankSum=-1.44;SOR=0.886;VarDP=87 GT:AD:DP:GQ:MIN_DP:PL:SB 1:25,62:87:99:.:1275,0:12,13,27,35 0/0:.:66:74:66:0,74,1800 +chrX 1334459 . T C 2652 . AC=2;AF=0.667;AN=3;AS_AltDP=117;AS_QD=16.35;BaseQRankSum=-2.192;DP=176;ExcessHet=0.0000;FS=33.316;MQ=58.88;MQRankSum=2.919;QD=16.35;ReadPosRankSum=0.333;SOR=0.378;VarDP=164 GT:AD:DP:GQ:PL:SB 1:18,89:107:99:2064,0:15,3,41,48 0/1:29,28:57:99:618,0,784:21,8,13,15 +chrX 1334797 . G C 1695 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=29.74;BaseQRankSum=1.871;DP=118;ExcessHet=0.0000;FS=3.163;MQ=59.54;MQRankSum=-0.094;QD=29.74;ReadPosRankSum=0.717;SOR=0.389;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:49:59:0,49 1/1:1,57:58:99:.:1725,162,0:0,1,30,27 +chrX 1334865 . GA AA,GAA,GAAA,G 1295 . AC=0,1,1,1;AF=0.00,0.333,0.333,0.333;AN=3;AS_AltDP=2,32,15,20;AS_QD=0.00,25.78,30.24,18.85;DP=103;ExcessHet=0.0000;FS=0.000;MQ=59.98;QD=19.20;SOR=1.131;VarDP=69 GT:AD:DP:GQ:PL:SB 3:0,2,17,15,0:34:40:636,1013,40,0,600:0,0,15,19 2/4:0,0,15,0,20:35:99:689,751,863,460,540,551,751,863,540,863,312,383,0,383,377:0,0,13,22 +chrX 1335060 . C A 308 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=6.04;BaseQRankSum=0.236;DP=121;ExcessHet=0.0000;FS=1.039;MQ=60.00;MQRankSum=0;QD=6.04;ReadPosRankSum=0.65;SOR=0.922;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 1:23,33:56:99:.:338,0:11,12,14,19 0/0:.:62:58:62:0,58,1453 +chrX 1335191 . G A 714 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=10.63;BaseQRankSum=1.062;DP=127;ExcessHet=0.0000;FS=6.440;MQ=60.00;MQRankSum=0;QD=10.63;ReadPosRankSum=-1.241;SOR=0.993;VarDP=70 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:54:99:54:0,1106 0/1:40,30:70:99:.:744,0,1021:17,23,18,12 +chrX 1335418 . AT A,ATT,TT 658 . AC=2,1,0;AF=0.667,0.333,0.00;AN=3;AS_AltDP=37,17,2;AS_QD=5.75,7.38,0.00;BaseQRankSum=1.032;DP=100;ExcessHet=0.0000;FS=7.072;MQ=59.97;MQRankSum=0;QD=9.05;ReadPosRankSum=-0.892;SOR=0.498;VarDP=76 GT:AD:DP:GQ:PL:SB 1:20,20,0,0:40:29:29,0,486,486:13,7,11,9 1/2:0,17,17,2:36:99:659,360,472,386,0,539,706,460,605,1545:0,0,15,21 +chrX 1335504 . G A 632 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=12.98;BaseQRankSum=-0.077;DP=121;ExcessHet=0.0000;FS=3.917;MQ=59.93;MQRankSum=-0.904;QD=12.98;ReadPosRankSum=1.256;SOR=1.009;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:87:67:0,87 0/1:24,27:51:99:.:662,0,542:11,13,16,11 +chrX 1336122 . G A 646 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=14.08;BaseQRankSum=0.481;DP=117;ExcessHet=0.0000;FS=0.000;MQ=59.98;MQRankSum=1.129;QD=14.08;ReadPosRankSum=0.755;SOR=0.846;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:87:67:0,87 0/1:22,26:48:99:.:676,0,521:11,11,14,12 +chrX 1336379 . C T 639 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=13.38;BaseQRankSum=-0.904;DP=122;ExcessHet=0.0000;FS=3.842;MQ=60.00;MQRankSum=0;QD=13.38;ReadPosRankSum=-1.262;SOR=0.625;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:87:67:0,87 0/1:24,26:50:99:.:669,0,644:10,14,14,12 +chrX 1336450 . G A 674 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=11.54;BaseQRankSum=-1.341;DP=130;ExcessHet=0.0000;FS=0.971;MQ=60.00;MQRankSum=0;QD=11.54;ReadPosRankSum=0.824;SOR=0.656;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:87:67:0,87 0/1:32,29:61:99:.:704,0,849:15,17,15,14 +chrX 1336550 . G GA 1017.97 . AC=2;AF=0.667;AN=3;AS_AltDP=41;AS_QD=25.78;DP=119;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=25.78;SOR=1.075;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:87:67:0,87 1/1:0,41:41:99:.:1057,123,0:0,0,17,24 +chrX 1336907 . T C 2379 . AC=3;AF=1.00;AN=3;AS_AltDP=107;AS_QD=16.73;BaseQRankSum=0.442;DP=147;ExcessHet=0.0000;FS=1.552;MQ=60.00;MQRankSum=0;QD=16.73;ReadPosRankSum=0.027;SOR=0.519;VarDP=144 GT:AD:DP:GQ:PL:SB 1:37,38:75:61:61,0:23,14,20,18 1/1:0,69:69:99:2348,208,0:0,0,41,28 +chrX 1336938 . C T 951 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=16.63;BaseQRankSum=-1.543;DP=130;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=16.63;ReadPosRankSum=-1.368;SOR=0.598;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:99:68:0,595 0/1:23,36:59:99:.:981,0,601:16,7,24,12 +chrX 1337864 . C T 481 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=7.10;BaseQRankSum=0.74;DP=140;ExcessHet=0.0000;FS=3.380;MQ=44.99;MQRankSum=1.534;QD=7.10;ReadPosRankSum=-1.633;SOR=0.800;VarDP=72 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:99:68:0,595 0/1:47,25:72:99:.:511,0,1123:21,26,14,11 +chrX 1337999 . C T 469 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=11.34;BaseQRankSum=2.517;DP=84;ExcessHet=0.0000;FS=11.766;MQ=49.98;MQRankSum=1.395;QD=11.34;ReadPosRankSum=0.095;SOR=1.469;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:38:8:38:0,8 0/1:25,19:44:99:.:499,0,572:9,16,13,6 +chrX 1338139 . G T 244 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=7.21;BaseQRankSum=0.437;DP=108;ExcessHet=0.0000;FS=1.342;MQ=56.65;MQRankSum=-0.255;QD=7.21;ReadPosRankSum=1.354;SOR=1.078;VarDP=38 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,943 0/1:25,13:38:99:.:274,0,600:12,13,5,8 +chrX 1338404 . C T 808 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=15.24;BaseQRankSum=-0.114;DP=126;ExcessHet=0.0000;FS=2.440;MQ=58.04;MQRankSum=1.951;QD=15.24;ReadPosRankSum=2.207;SOR=1.121;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,943 0/1:24,31:55:99:.:838,0,597:15,9,22,9 +chrX 1338681 . G A 892 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=15.37;BaseQRankSum=0.641;DP=130;ExcessHet=0.0000;FS=2.198;MQ=60.00;MQRankSum=0;QD=15.37;ReadPosRankSum=1.457;SOR=1.085;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,943 0/1:27,33:60:99:.:922,0,717:13,14,13,20 +chrX 1338809 . G GT 573.97 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=10.05;BaseQRankSum=0.826;DP=134;ExcessHet=0.0000;FS=0.975;MQ=59.75;MQRankSum=-0.094;QD=10.05;ReadPosRankSum=0.847;SOR=0.788;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,943 0/1:33,28:61:99:.:613,0,805:17,16,13,15 +chrX 1338863 . G A 864 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=13.55;BaseQRankSum=0.961;DP=135;ExcessHet=0.0000;FS=0.000;MQ=59.48;MQRankSum=0.022;QD=13.55;ReadPosRankSum=-0.93;SOR=0.816;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,943 0/1:33,33:66:99:.:894,0,864:15,18,14,19 +chrX 1339115 . T C 657 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=12.05;BaseQRankSum=1.263;DP=127;ExcessHet=0.0000;FS=2.243;MQ=60.00;MQRankSum=0;QD=12.05;ReadPosRankSum=-1.956;SOR=0.980;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,943 0/1:31,26:57:99:.:687,0,827:16,15,11,15 +chrX 1339373 . T C 940 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=13.47;BaseQRankSum=-0.765;DP=143;ExcessHet=0.0000;FS=4.729;MQ=60.00;MQRankSum=0;QD=13.47;ReadPosRankSum=-0.377;SOR=1.385;VarDP=72 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,943 0/1:36,36:72:99:.:970,0,1004:17,19,12,24 +chrX 1339433 . G A 810 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=10.63;BaseQRankSum=0.138;DP=148;ExcessHet=0.0000;FS=3.071;MQ=60.00;MQRankSum=0;QD=10.63;ReadPosRankSum=-0.371;SOR=0.379;VarDP=79 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,943 0/1:45,34:79:99:.:840,0,1222:18,27,17,17 +chrX 1339519 . C T 813 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=12.04;BaseQRankSum=0.569;DP=141;ExcessHet=0.0000;FS=0.918;MQ=60.00;MQRankSum=0;QD=12.04;ReadPosRankSum=1.4;SOR=0.520;VarDP=70 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,943 0/1:37,33:70:99:.:843,0,936:15,22,15,18 +chrX 1340707 . C T 4269 . AC=3;AF=1.00;AN=3;AS_AltDP=130;AS_QD=33.07;DP=141;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.07;SOR=0.856;VarDP=130 GT:AD:DP:GQ:PL:SB 1:0,75:75:99:2517,0:0,0,43,32 1/1:0,55:55:99:1782,165,0:0,0,27,28 +chrX 1340842 . C T 4097 . AC=3;AF=1.00;AN=3;AS_AltDP=131;AS_QD=31.50;DP=140;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.50;SOR=0.708;VarDP=131 GT:AD:DP:GQ:PL:SB 1:0,67:67:99:2123,0:0,0,32,35 1/1:0,64:64:99:2004,191,0:0,0,34,30 +chrX 1341116 . A T 3433 . AC=3;AF=1.00;AN=3;AS_AltDP=104;AS_QD=33.30;DP=114;ExcessHet=0.0000;FS=0.000;MQ=59.88;QD=33.30;SOR=0.772;VarDP=104 GT:AD:DP:GQ:PL:SB 1:0,49:49:99:1673,0:0,0,19,30 1/1:0,55:55:99:1790,165,0:0,0,31,24 +chrX 1341215 . G A 4072 . AC=3;AF=1.00;AN=3;AS_AltDP=127;AS_QD=32.30;DP=131;ExcessHet=0.0000;FS=0.000;MQ=59.65;QD=32.30;SOR=0.993;VarDP=127 GT:AD:DP:GQ:PL:SB 1:0,66:66:99:2123,0:0,0,39,27 1/1:0,61:61:99:1979,182,0:0,0,33,28 +chrX 1341255 . A G 6006 . AC=3;AF=1.00;AN=3;AS_AltDP=143;AS_QD=35.89;DP=147;ExcessHet=0.0000;FS=0.000;MQ=59.95;QD=42.21;SOR=0.956;VarDP=143 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,75:75:99:.:.:3149,0:.:0,0,42,33 1|1:0,68:68:99:0|1:1341255_A_G:2887,205,0:1341255:0,0,38,30 +chrX 1341269 . C T 5639 . AC=3;AF=1.00;AN=3;AS_AltDP=130;AS_QD=28.49;DP=134;ExcessHet=0.0000;FS=0.000;MQ=59.96;QD=43.61;SOR=0.892;VarDP=130 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,66:66:99:.:.:2891,0:.:0,0,37,29 1|1:0,64:64:99:0|1:1341255_A_G:2778,193,0:1341255:0,0,34,30 +chrX 1341301 . GA G 2901.97 . AC=3;AF=1.00;AN=3;AS_AltDP=110;AS_QD=26.74;DP=148;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=26.74;SOR=0.767;VarDP=110 GT:AD:DP:GQ:PL:SB 1:0,48:48:99:1287,0:0,0,24,24 1/1:0,62:62:99:1654,186,0:0,0,29,33 +chrX 1341374 . C CAT 4501.97 . AC=2;AF=0.667;AN=3;AS_AltDP=108;AS_QD=30.68;BaseQRankSum=1.936;DP=151;ExcessHet=0.0000;FS=1.481;MQ=59.94;MQRankSum=0;QD=30.68;ReadPosRankSum=-0.629;SOR=0.531;VarDP=148 GT:AD:DP:GQ:PL:SB 1:0,65:65:99:2907,0:0,0,38,27 0/1:40,43:83:99:1634,0,1509:23,17,19,24 +chrX 1341381 . GCA G 6170.97 . AC=3;AF=1.00;AN=3;AS_AltDP=144;AS_QD=30.13;DP=148;ExcessHet=0.0000;FS=0.000;MQ=59.94;QD=43.13;SOR=0.904;VarDP=144 GT:AD:DP:GQ:PL:SB 1:0,65:65:99:2903,0:0,0,38,27 1/1:0,79:79:99:3307,238,0:0,0,41,38 +chrX 1341544 . A ACT 6288.97 . AC=3;AF=1.00;AN=3;AS_AltDP=141;AS_QD=27.00;DP=141;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.88;SOR=0.892;VarDP=141 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,74:74:99:.:.:3324,0:.:0,0,36,38 1|1:0,67:67:99:0|1:1341544_A_ACT:3004,202,0:1341544:0,0,28,39 +chrX 1341546 . G C 6343 . AC=3;AF=1.00;AN=3;AS_AltDP=142;AS_QD=32.78;DP=142;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.88;SOR=0.874;VarDP=142 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,75:75:99:.:.:3369,0:.:0,0,37,38 1|1:0,67:67:99:0|1:1341544_A_ACT:3004,202,0:1341544:0,0,28,39 +chrX 1341548 . G A 6329 . AC=3;AF=1.00;AN=3;AS_AltDP=143;AS_QD=28.25;DP=143;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.47;SOR=0.889;VarDP=143 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,77:77:99:.:.:3399,0:.:0,0,37,40 1|1:0,66:66:99:0|1:1341544_A_ACT:2960,199,0:1341544:0,0,28,38 +chrX 1341553 . CATGT C 6118.97 . AC=3;AF=1.00;AN=3;AS_AltDP=139;AS_QD=29.01;DP=143;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.30;SOR=0.895;VarDP=139 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,75:75:99:.:.:3299,0:.:0,0,35,40 1|1:0,64:64:99:0|1:1341544_A_ACT:2859,193,0:1341544:0,0,28,36 +chrX 1341602 . G A 2211 . AC=2;AF=0.667;AN=3;AS_AltDP=70;AS_QD=32.01;DP=145;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.01;SOR=0.693;VarDP=70 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:73:9:73:0,9 1/1:0,70:70:99:.:2241,209,0:0,0,35,35 +chrX 1341661 . A G 4499 . AC=3;AF=1.00;AN=3;AS_AltDP=141;AS_QD=32.12;DP=145;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.12;SOR=0.796;VarDP=141 GT:AD:DP:GQ:PL:SB 1:0,65:65:99:2134,0:0,0,38,27 1/1:0,76:76:99:2395,227,0:0,0,36,40 +chrX 1341724 . G C 4531 . AC=3;AF=1.00;AN=3;AS_AltDP=136;AS_QD=33.54;DP=141;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.54;SOR=0.784;VarDP=136 GT:AD:DP:GQ:PL:SB 1:0,64:64:99:2145,0:0,0,33,31 1/1:0,72:72:99:2416,216,0:0,0,32,40 +chrX 1341847 . A G 4142 . AC=3;AF=1.00;AN=3;AS_AltDP=128;AS_QD=32.59;DP=128;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.59;SOR=1.051;VarDP=128 GT:AD:DP:GQ:PL:SB 1:0,69:69:99:2265,0:0,0,29,40 1/1:0,59:59:99:1907,176,0:0,0,25,34 +chrX 1341935 . C T 3430 . AC=3;AF=1.00;AN=3;AS_AltDP=106;AS_QD=32.64;DP=112;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.64;SOR=0.770;VarDP=106 GT:AD:DP:GQ:PL:SB 1:0,55:55:99:1805,0:0,0,26,29 1/1:0,51:51:99:1655,153,0:0,0,29,22 +chrX 1342025 . C T 3606 . AC=3;AF=1.00;AN=3;AS_AltDP=117;AS_QD=30.81;BaseQRankSum=2.071;DP=123;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=30.81;ReadPosRankSum=1.116;SOR=0.389;VarDP=118 GT:AD:DP:GQ:PL:SB 1:0,59:59:99:1845,0:0,0,24,35 1/1:1,58:59:99:1791,167,0:0,1,25,33 +chrX 1342099 . C T 3956 . AC=3;AF=1.00;AN=3;AS_AltDP=119;AS_QD=33.50;DP=124;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.50;SOR=1.015;VarDP=119 GT:AD:DP:GQ:PL:SB 1:0,66:66:99:2234,0:0,0,29,37 1/1:0,53:53:99:1752,159,0:0,0,22,31 +chrX 1342166 . C G 3523 . AC=3;AF=1.00;AN=3;AS_AltDP=109;AS_QD=32.60;DP=113;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.60;SOR=0.869;VarDP=109 GT:AD:DP:GQ:PL:SB 1:0,62:62:99:1979,0:0,0,34,28 1/1:0,47:47:99:1574,141,0:0,0,25,22 +chrX 1342191 . G A 3565 . AC=3;AF=1.00;AN=3;AS_AltDP=108;AS_QD=33.29;DP=112;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.29;SOR=1.179;VarDP=108 GT:AD:DP:GQ:PL:SB 1:0,64:64:99:2108,0:0,0,41,23 1/1:0,44:44:99:1487,132,0:0,0,24,20 +chrX 1342323 . A G 3588 . AC=3;AF=1.00;AN=3;AS_AltDP=110;AS_QD=32.89;DP=112;ExcessHet=0.0000;FS=0.000;MQ=59.96;QD=32.89;SOR=0.693;VarDP=110 GT:AD:DP:GQ:PL:SB 1:0,56:56:99:1841,0:0,0,29,27 1/1:0,54:54:99:1777,161,0:0,0,26,28 +chrX 1342559 . C CT 86.97 . AC=1;AF=0.333;AN=3;AS_AltDP=9;AS_QD=6.00;BaseQRankSum=0.153;DP=95;ExcessHet=0.0000;FS=4.018;MQ=59.57;MQRankSum=-1.058;QD=6.00;ReadPosRankSum=-0.391;SOR=0.559;VarDP=21 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:99:56:0,685 0/1:12,9:21:99:.:126,0,182:4,8,5,4 +chrX 1342578 . G T 48 . AC=1;AF=0.333;AN=3;AS_AltDP=7;AS_QD=2.89;BaseQRankSum=-2.088;DP=94;ExcessHet=0.0000;FS=30.497;MQ=59.56;MQRankSum=0.676;QD=2.89;ReadPosRankSum=1.356;SOR=4.161;VarDP=27 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:99:56:0,685 0/1:20,7:27:78:.:78,0,563:5,15,7,0 +chrX 1342726 . A G 633 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=14.11;BaseQRankSum=0.239;DP=105;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.11;ReadPosRankSum=0.332;SOR=0.687;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:99:56:0,685 0/1:21,26:47:99:.:663,0,479:8,13,10,16 +chrX 1342893 . G A 3082 . AC=3;AF=1.00;AN=3;AS_AltDP=94;AS_QD=33.11;DP=95;ExcessHet=0.0000;FS=0.000;MQ=59.94;QD=33.11;SOR=1.464;VarDP=94 GT:AD:DP:GQ:PL:SB 1:0,47:47:99:1569,0:0,0,33,14 1/1:0,47:47:99:1543,141,0:0,0,28,19 +chrX 1342944 . G A 770 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=18.18;BaseQRankSum=-0.144;DP=107;ExcessHet=0.0000;FS=9.221;MQ=59.98;MQRankSum=-0.709;QD=18.18;ReadPosRankSum=0.403;SOR=1.220;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:99:60:0,526 0/1:16,28:44:99:.:800,0,402:6,10,18,10 +chrX 1343510 . CA C 1671.97 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=31.11;DP=120;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.11;SOR=0.884;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:99:60:0,526 1/1:0,55:55:99:.:1711,165,0:0,0,30,25 +chrX 1343666 . C CA 193.97 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=12.94;BaseQRankSum=0.25;DP=98;ExcessHet=0.0000;FS=9.672;MQ=59.12;MQRankSum=-0.298;QD=12.94;ReadPosRankSum=0.594;SOR=3.101;VarDP=18 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:99:60:0,526 0/1:3,15:18:8:.:233,0,8:2,1,2,13 +chrX 1343775 . CT C 276.97 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=9.03;BaseQRankSum=1.018;DP=103;ExcessHet=0.0000;FS=2.958;MQ=59.51;MQRankSum=-1.032;QD=9.03;ReadPosRankSum=1.019;SOR=0.321;VarDP=35 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:99:60:0,526 0/1:19,16:35:99:.:316,0,387:12,7,8,8 +chrX 1343857 . A G 384 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=11.19;BaseQRankSum=-0.375;DP=81;ExcessHet=0.0000;FS=1.273;MQ=59.93;MQRankSum=0;QD=11.19;ReadPosRankSum=-0.519;SOR=0.657;VarDP=37 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:39:16:39:0,16 0/1:20,17:37:99:.:414,0,534:11,9,8,9 +chrX 1344084 . A G 561 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=10.94;BaseQRankSum=-1.398;DP=118;ExcessHet=0.0000;FS=2.277;MQ=60.00;MQRankSum=0;QD=10.94;ReadPosRankSum=0.418;SOR=1.051;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,278 0/1:30,24:54:99:.:591,0,1126:15,15,14,10 +chrX 1344097 . TTA T 1015.97 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=21.53;BaseQRankSum=0.33;DP=112;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=21.53;ReadPosRankSum=-0.191;SOR=0.705;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,278 0/1:22,27:49:99:.:1055,0,832:13,9,16,11 +chrX 1344131 . G C 1671 . AC=3;AF=1.00;AN=3;AS_AltDP=82;AS_QD=15.19;BaseQRankSum=-0.314;DP=116;ExcessHet=0.0000;FS=2.797;MQ=60.00;MQRankSum=0;QD=15.19;ReadPosRankSum=-0.152;SOR=0.533;VarDP=112 GT:AD:DP:GQ:PL:SB 1:30,31:61:9:9,0:13,17,17,14 1/1:0,51:51:99:1692,153,0:0,0,25,26 +chrX 1344657 . T C 608 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=6.79;BaseQRankSum=0.435;DP=97;ExcessHet=0.0000;FS=1.676;MQ=59.51;MQRankSum=0.553;QD=6.79;ReadPosRankSum=0.969;SOR=0.887;VarDP=94 GT:AD:DP:GQ:PL:SB 1:23,24:47:45:45,0:13,10,11,13 0/1:24,23:47:99:593,0,632:11,13,10,13 +chrX 1344878 . G C 697 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=15.47;BaseQRankSum=-0.88;DP=103;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=15.47;ReadPosRankSum=0.678;SOR=0.586;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:53:99:53:0,189 0/1:20,27:47:99:.:727,0,524:11,9,14,13 +chrX 1345006 . CA C 1228.97 . AC=2;AF=0.667;AN=3;AS_AltDP=48;AS_QD=26.42;DP=108;ExcessHet=0.0000;FS=0.000;MQ=59.06;QD=26.42;SOR=0.963;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:53:99:53:0,189 1/1:0,48:48:99:.:1268,144,0:0,0,21,27 +chrX 1345233 . C A,CAA 553 . AC=0,2;AF=0.00,0.667;AN=3;AS_AltDP=3,37;AS_QD=0.00,7.38;BaseQRankSum=-0.828;DP=96;ExcessHet=0.0000;FS=3.102;MQ=59.56;MQRankSum=0.37;QD=7.11;ReadPosRankSum=1.326;SOR=0.386;VarDP=82 GT:AD:DP:GQ:PL:SB 2:15,3,22:40:99:170,832,0:12,3,13,12 0/2:27,0,15:42:99:413,495,1396,0,901,856:17,10,11,4 +chrX 1345291 . G T 358 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=7.19;BaseQRankSum=1.319;DP=115;ExcessHet=0.0000;FS=3.997;MQ=59.97;MQRankSum=0;QD=7.19;ReadPosRankSum=-0.837;SOR=0.275;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 1:22,32:54:99:.:388,0:15,7,17,15 0/0:.:58:99:58:0,99,1697 +chrX 1345691 . T C 537 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=9.61;BaseQRankSum=1.652;DP=121;ExcessHet=0.0000;FS=3.747;MQ=59.69;MQRankSum=-2.264;QD=9.61;ReadPosRankSum=0.416;SOR=0.991;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,243 0/1:37,22:59:99:.:567,0,1008:17,20,13,9 +chrX 1345771 . C T 623 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=8.71;BaseQRankSum=1.226;DP=138;ExcessHet=0.0000;FS=10.591;MQ=59.81;MQRankSum=-1.879;QD=8.71;ReadPosRankSum=0.486;SOR=0.577;VarDP=75 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,243 0/1:48,27:75:99:.:653,0,1257:16,32,15,12 +chrX 1345928 . G C 762 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=13.89;BaseQRankSum=-1.094;DP=123;ExcessHet=0.0000;FS=2.226;MQ=60.00;MQRankSum=0;QD=13.89;ReadPosRankSum=0.656;SOR=0.665;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,243 0/1:27,30:57:99:.:792,0,748:12,15,16,14 +chrX 1346295 . T C 491 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=4.34;BaseQRankSum=-2.47;DP=131;ExcessHet=0.0000;FS=6.988;MQ=59.91;MQRankSum=0;QD=4.34;ReadPosRankSum=0.398;SOR=0.647;VarDP=120 GT:AD:DP:GQ:PL:SB 1:27,35:62:60:60,0:16,11,15,20 0/1:36,22:58:99:461,0,1028:21,15,11,11 +chrX 1346364 . G A 804 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=13.90;BaseQRankSum=1.52;DP=128;ExcessHet=0.0000;FS=7.343;MQ=59.36;MQRankSum=-1.047;QD=13.90;ReadPosRankSum=1.179;SOR=1.006;VarDP=60 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:67:99:67:.:.:0,175 0|1:37,23:60:99:.:0|1:1346364_G_A:834,0,1432:1346364:22,15,9,14 +chrX 1346371 . A G 803 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=14.61;BaseQRankSum=0.137;DP=126;ExcessHet=0.0000;FS=7.398;MQ=59.33;MQRankSum=-0.967;QD=14.61;ReadPosRankSum=1.133;SOR=1.015;VarDP=57 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:67:99:67:.:.:0,175 0|1:34,23:57:99:.:0|1:1346364_G_A:833,0,1348:1346364:20,14,9,14 +chrX 1346644 . A G 540 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=10.18;BaseQRankSum=-0.59;DP=124;ExcessHet=0.0000;FS=1.039;MQ=60.00;MQRankSum=0;QD=10.18;ReadPosRankSum=1.558;SOR=0.507;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,175 0/1:33,23:56:99:.:570,0,939:14,19,11,12 +chrX 1347174 . T C 39 . AC=1;AF=0.333;AN=3;AS_AltDP=48;AS_QD=0.73;BaseQRankSum=0.147;DP=159;ExcessHet=0.0000;FS=5.118;MQ=59.59;MQRankSum=-0.509;QD=0.734;ReadPosRankSum=-0.62;SOR=0.357;VarDP=94 GT:AD:DP:GQ:MIN_DP:PL:SB 1:46,48:94:69:.:69,0:28,18,24,24 0/0:.:64:51:64:0,51,1235 +chrX 1347587 . C G 31 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=0.91;BaseQRankSum=1.389;DP=132;ExcessHet=0.0000;FS=0.939;MQ=59.94;MQRankSum=1.015;QD=0.910;ReadPosRankSum=-0.702;SOR=0.542;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 1:34,33:67:61:.:61,0:13,21,14,19 0/0:.:64:51:64:0,51,1235 +chrX 1347813 . T C 120 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=2.78;BaseQRankSum=0.129;DP=121;ExcessHet=0.0000;FS=3.860;MQ=59.27;MQRankSum=-0.437;QD=2.78;ReadPosRankSum=0.535;SOR=1.215;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 1:25,29:54:99:.:150,0:12,13,18,11 0/0:.:64:51:64:0,51,1235 +chrX 1347906 . G A 1878 . AC=1;AF=0.333;AN=3;AS_AltDP=51;AS_QD=29.83;BaseQRankSum=2.313;DP=116;ExcessHet=0.0000;FS=0.000;MQ=59.34;MQRankSum=-0.165;QD=36.69;ReadPosRankSum=-0.067;SOR=0.273;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,51:52:99:.:1908,0:0,1,24,27 0/0:.:64:51:64:0,51,1235 +chrX 1348036 . C CA 108.97 . AC=1;AF=0.333;AN=3;AS_AltDP=9;AS_QD=6.17;BaseQRankSum=-0.211;DP=96;ExcessHet=0.0000;FS=18.842;MQ=57.92;MQRankSum=-0.249;QD=6.17;ReadPosRankSum=-0.239;SOR=3.023;VarDP=24 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:99:60:0,189 0/1:15,9:24:99:.:148,0,307:10,5,1,8 +chrX 1348068 . C T 1037 . AC=2;AF=0.667;AN=3;AS_AltDP=33;AS_QD=31.38;BaseQRankSum=2.649;DP=101;ExcessHet=0.0000;FS=0.000;MQ=58.98;MQRankSum=0;QD=31.38;ReadPosRankSum=-1.53;SOR=0.302;VarDP=34 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:99:60:0,189 1/1:1,33:34:91:.:1067,91,0:0,1,15,18 +chrX 1348212 . G T 356 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=7.15;BaseQRankSum=-0.178;DP=104;ExcessHet=0.0000;FS=2.322;MQ=60.00;MQRankSum=0;QD=7.15;ReadPosRankSum=0.985;SOR=0.538;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 1:21,33:54:99:.:386,0:9,12,17,16 0/0:.:53:25:48:0,25,1300 +chrX 1348326 . G C 3015 . AC=2;AF=0.667;AN=3;AS_AltDP=104;AS_QD=23.07;BaseQRankSum=-0.321;DP=138;ExcessHet=0.0000;FS=7.134;MQ=59.65;MQRankSum=0;QD=23.07;ReadPosRankSum=0.713;SOR=0.254;VarDP=132 GT:AD:DP:GQ:PL:SB 1:0,76:76:99:2315,0:0,0,30,46 0/1:28,28:56:99:730,0,750:8,20,16,12 +chrX 1348397 . G C 1994 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=31.63;BaseQRankSum=-0.466;DP=126;ExcessHet=0.0000;FS=3.438;MQ=60.00;MQRankSum=0;QD=31.63;ReadPosRankSum=-1.354;SOR=0.583;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,233 1/1:1,63:64:99:.:2024,158,0:0,1,35,28 +chrX 1348511 . A C 105 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=2.60;BaseQRankSum=0.574;DP=96;ExcessHet=0.0000;FS=9.895;MQ=60.00;MQRankSum=0;QD=2.60;ReadPosRankSum=-0.514;SOR=0.688;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 1:24,28:52:99:.:135,0:16,8,12,16 0/0:.:51:27:42:0,27,1081 +chrX 1348692 . T G,C,TTCTC 1925 . AC=1,1,1;AF=0.333,0.333,0.333;AN=3;AS_AltDP=24,15,8;AS_QD=6.17,33.02,26.18;BaseQRankSum=-0.412;DP=85;ExcessHet=0.0000;FS=1.076;MQ=59.05;MQRankSum=-0.818;QD=30.08;ReadPosRankSum=1.169;SOR=0.544;VarDP=65 GT:AD:DP:GQ:PL:SB 1:18,24,0,0:42:99:259,0,1069,1069:6,12,10,14 2/3:0,0,15,8:23:99:1696,1369,1339,376,391,307,655,671,0,602:0,0,8,15 +chrX 1348696 . CTTTCTTTCTG C 133.97 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=3.76;BaseQRankSum=0.991;DP=89;ExcessHet=0.0000;FS=1.142;MQ=59.03;MQRankSum=-0.873;QD=3.76;ReadPosRankSum=0.743;SOR=0.498;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 1:21,25:46:99:.:173,0:8,13,11,14 0/0:.:41:86:41:0,86,1146 +chrX 1348706 . G *,GTTTC 2054.97 . AC=1,2;AF=0.333,0.667;AN=3;AS_AltDP=0,47;AS_QD=37.94,31.37;DP=95;ExcessHet=0.0000;FS=0.000;MQ=59.28;QD=44.55;SOR=0.691;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:21,25,0:46:99:.:.:173,0,1104:.:8,13,11,14 2|2:0,0,47:47:99:0|1:1348706_G_GTTTC:2094,2094,2094,141,141,0:1348706:0,0,17,30 +chrX 1348732 . T TTC 3495.97 . AC=3;AF=1.00;AN=3;AS_AltDP=82;AS_QD=25.72;DP=83;ExcessHet=0.0000;FS=0.000;MQ=59.65;QD=43.11;SOR=1.022;VarDP=82 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,41:41:99:.:.:1793,0:.:0,0,20,21 1|1:0,41:41:99:0|1:1348706_G_GTTTC:1742,122,0:1348706:0,0,15,26 +chrX 1348885 . T TTTC 3508.97 . AC=3;AF=1.00;AN=3;AS_AltDP=79;AS_QD=33.21;DP=85;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.91;SOR=0.824;VarDP=79 GT:AD:DP:GQ:PL:SB 1:0,47:47:99:2108,0:0,0,25,22 1/1:0,32:32:96:1440,96,0:0,0,12,20 +chrX 1349187 . C CT 1561.97 . AC=2;AF=0.667;AN=3;AS_AltDP=65;AS_QD=19.77;BaseQRankSum=2.678;DP=99;ExcessHet=0.0000;FS=9.982;MQ=60.00;MQRankSum=0;QD=19.77;ReadPosRankSum=-0.104;SOR=0.572;VarDP=81 GT:AD:DP:GQ:PL:SB 1:1,46:47:99:1209,0:1,0,21,25 0/1:15,19:34:99:392,0,291:10,5,8,11 +chrX 1349244 . C T 2526 . AC=2;AF=0.667;AN=3;AS_AltDP=70;AS_QD=29.05;BaseQRankSum=1.085;DP=93;ExcessHet=0.0000;FS=0.000;MQ=59.37;MQRankSum=0;QD=29.05;ReadPosRankSum=-0.234;SOR=0.608;VarDP=88 GT:AD:DP:GQ:PL:SB 1:0,50:50:99:1995,0:0,0,26,24 0/1:18,20:38:99:561,0,456:8,10,7,13 +chrX 1349357 . T C 2815 . AC=2;AF=0.667;AN=3;AS_AltDP=95;AS_QD=22.40;BaseQRankSum=2.514;DP=130;ExcessHet=0.0000;FS=8.234;MQ=59.89;MQRankSum=0;QD=22.40;ReadPosRankSum=1.622;SOR=1.230;VarDP=127 GT:AD:DP:GQ:PL:SB 1:2,65:67:99:2013,0:1,1,38,27 0/1:30,30:60:99:832,0,771:14,16,21,9 +chrX 1349626 . T G 1183 . AC=2;AF=0.667;AN=3;AS_AltDP=74;AS_QD=8.73;BaseQRankSum=1.848;DP=148;ExcessHet=0.0000;FS=3.059;MQ=60.00;MQRankSum=0;QD=8.73;ReadPosRankSum=1.496;SOR=0.478;VarDP=139 GT:AD:DP:GQ:PL:SB 1:29,32:61:99:144,0:9,20,17,15 0/1:36,42:78:99:1069,0,1018:16,20,16,26 +chrX 1350200 . A G 1745 . AC=2;AF=0.667;AN=3;AS_AltDP=79;AS_QD=12.50;BaseQRankSum=0.993;DP=144;ExcessHet=0.0000;FS=1.393;MQ=58.75;MQRankSum=1.25;QD=12.50;ReadPosRankSum=1.365;SOR=0.563;VarDP=142 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:27,34:61:99:.:.:134,0:.:18,9,19,15 0|1:36,45:81:99:0|1:1350200_A_G:1641,0,1294:1350200:24,12,31,14 +chrX 1350225 . C T 3587 . AC=2;AF=0.667;AN=3;AS_AltDP=100;AS_QD=26.60;BaseQRankSum=2.916;DP=139;ExcessHet=0.0000;FS=3.672;MQ=58.32;MQRankSum=-0.327;QD=26.60;ReadPosRankSum=-0.358;SOR=0.411;VarDP=136 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:3,55:58:99:.:.:1967,0:.:3,0,30,25 0|1:33,45:78:99:0|1:1350200_A_G:1650,0,1210:1350200:21,12,28,17 +chrX 1350588 . TA T 2123.97 . AC=1;AF=0.333;AN=3;AS_AltDP=54;AS_QD=34.86;DP=125;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=40.06;SOR=1.118;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,54:54:99:.:2163,0:0,0,32,22 0/0:.:63:84:63:0,84,1260 +chrX 1350649 . C G 3193 . AC=1;AF=0.333;AN=3;AS_AltDP=72;AS_QD=29.75;DP=133;ExcessHet=0.0000;FS=0.000;MQ=59.59;QD=44.76;SOR=1.226;VarDP=72 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,72:72:99:.:3223,0:0,0,44,28 0/0:.:60:0:60:0,0,297 +chrX 1350672 . T C 3255 . AC=1;AF=0.333;AN=3;AS_AltDP=73;AS_QD=29.24;DP=131;ExcessHet=0.0000;FS=0.000;MQ=59.37;QD=45.00;SOR=1.032;VarDP=73 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,73:73:99:.:3285,0:0,0,42,31 0/0:.:57:0:57:0,0,302 +chrX 1350682 . G A 3180 . AC=1;AF=0.333;AN=3;AS_AltDP=72;AS_QD=31.21;DP=135;ExcessHet=0.0000;FS=0.000;MQ=59.37;QD=44.58;SOR=1.148;VarDP=72 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,72:72:99:.:3210,0:0,0,43,29 0/0:.:61:0:61:0,0,312 +chrX 1350777 . C T 2127 . AC=2;AF=0.667;AN=3;AS_AltDP=69;AS_QD=22.47;BaseQRankSum=-1.342;DP=98;ExcessHet=0.0000;FS=3.006;MQ=59.34;MQRankSum=-1.067;QD=22.47;ReadPosRankSum=-0.02;SOR=0.931;VarDP=96 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,47:47:99:.:.:1564,0:.:0,0,27,20 0|1:27,22:49:99:0|1:1350777_C_T:593,0,736:1350777:13,14,12,10 +chrX 1350890 . A AGACAAAC 3309.97 . AC=2;AF=0.667;AN=3;AS_AltDP=79;AS_QD=29.12;BaseQRankSum=1.22;DP=126;ExcessHet=0.0000;FS=1.640;MQ=59.80;MQRankSum=0;QD=29.12;ReadPosRankSum=0.264;SOR=0.510;VarDP=115 GT:AD:DP:GQ:PL:SB 1:0,54:54:99:2418,0:0,0,23,31 0/1:36,25:61:99:931,0,1427:14,22,12,13 +chrX 1351001 . A G 2664 . AC=2;AF=0.667;AN=3;AS_AltDP=86;AS_QD=23.63;BaseQRankSum=2.267;DP=119;ExcessHet=0.0000;FS=0.000;MQ=59.41;MQRankSum=0;QD=23.63;ReadPosRankSum=-0.116;SOR=0.792;VarDP=114 GT:AD:DP:GQ:PL:SB 1:0,61:61:99:2014,0:0,0,29,32 0/1:28,25:53:99:680,0,687:13,15,9,16 +chrX 1351079 . T C 2337 . AC=2;AF=0.667;AN=3;AS_AltDP=81;AS_QD=21.32;BaseQRankSum=-0.595;DP=116;ExcessHet=0.0000;FS=2.819;MQ=59.86;MQRankSum=0;QD=21.32;ReadPosRankSum=-0.424;SOR=0.566;VarDP=111 GT:AD:DP:GQ:PL:SB 1:0,54:54:99:1695,0:0,0,29,25 0/1:30,27:57:99:672,0,801:13,17,13,14 +chrX 1351138 . T C 2405 . AC=2;AF=0.667;AN=3;AS_AltDP=82;AS_QD=21.36;BaseQRankSum=-2.898;DP=117;ExcessHet=0.0000;FS=0.773;MQ=59.82;MQRankSum=0;QD=21.36;ReadPosRankSum=0.068;SOR=0.604;VarDP=114 GT:AD:DP:GQ:PL:SB 1:0,59:59:99:1936,0:0,0,28,31 0/1:32,23:55:99:499,0,898:14,18,10,13 +chrX 1351182 . A G 3052 . AC=2;AF=0.667;AN=3;AS_AltDP=96;AS_QD=24.46;BaseQRankSum=0.398;DP=130;ExcessHet=0.0000;FS=1.667;MQ=59.83;MQRankSum=0;QD=24.46;ReadPosRankSum=1.035;SOR=0.538;VarDP=126 GT:AD:DP:GQ:PL:SB 1:0,66:66:99:2264,0:0,0,30,36 0/1:30,30:60:99:818,0,807:13,17,16,14 +chrX 1351339 . T TA 3483.97 . AC=2;AF=0.667;AN=3;AS_AltDP=97;AS_QD=26.89;BaseQRankSum=-1.456;DP=140;ExcessHet=0.0000;FS=2.615;MQ=60.00;MQRankSum=0;QD=26.89;ReadPosRankSum=0.706;SOR=1.044;VarDP=131 GT:AD:DP:GQ:PL:SB 1:0,65:65:99:2483,0:0,0,39,26 0/1:34,32:66:99:1040,0,1033:17,17,17,15 +chrX 1351667 . C T 591 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=12.42;BaseQRankSum=2.248;DP=114;ExcessHet=0.0000;FS=1.096;MQ=59.40;MQRankSum=-0.021;QD=12.42;ReadPosRankSum=1.923;SOR=0.446;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:70:64:61:0,64 0/1:26,24:50:99:.:621,0,590:15,11,12,12 +chrX 1351909 . C T 270 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=6.12;BaseQRankSum=0.521;DP=113;ExcessHet=0.0000;FS=2.754;MQ=58.98;MQRankSum=-1.536;QD=6.12;ReadPosRankSum=-1.173;SOR=1.251;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:70:64:61:0,64 0/1:35,14:49:99:.:300,0,969:17,18,5,9 +chrX 1352044 . C T 938 . AC=2;AF=0.667;AN=3;AS_AltDP=69;AS_QD=7.50;BaseQRankSum=0.369;DP=131;ExcessHet=0.0000;FS=5.327;MQ=59.67;MQRankSum=0.02;QD=7.50;ReadPosRankSum=1.461;SOR=1.010;VarDP=129 GT:AD:DP:GQ:PL:SB 1:35,36:71:45:45,0:16,19,21,15 0/1:25,33:58:99:923,0,654:13,12,19,14 +chrX 1352245 . G T 2841 . AC=2;AF=0.667;AN=3;AS_AltDP=94;AS_QD=23.15;BaseQRankSum=0.953;DP=127;ExcessHet=0.0000;FS=3.961;MQ=60.00;MQRankSum=0;QD=23.15;ReadPosRankSum=1.494;SOR=0.896;VarDP=124 GT:AD:DP:GQ:PL:SB 1:0,64:64:99:2068,0:0,0,28,34 0/1:30,30:60:99:803,0,757:16,14,12,18 +chrX 1352649 . C G 2881 . AC=2;AF=0.667;AN=3;AS_AltDP=93;AS_QD=23.86;BaseQRankSum=-1.113;DP=125;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=23.86;ReadPosRankSum=-0.898;SOR=0.653;VarDP=122 GT:AD:DP:GQ:PL:SB 1:0,57:57:99:1964,0:0,0,28,29 0/1:29,36:65:99:947,0,754:14,15,19,17 +chrX 1352724 . C T 4330 . AC=2;AF=0.667;AN=3;AS_AltDP=103;AS_QD=32.78;BaseQRankSum=-0.117;DP=134;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=32.78;ReadPosRankSum=0.525;SOR=0.653;VarDP=133 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,62:62:99:.:.:2759,0:.:0,0,36,26 0|1:30,41:71:99:0|1:1352724_C_T:1601,0,1115:1352724:17,13,21,20 +chrX 1352731 . T G 4355 . AC=2;AF=0.667;AN=3;AS_AltDP=104;AS_QD=32.48;BaseQRankSum=-0.57;DP=138;ExcessHet=0.0000;FS=0.770;MQ=60.00;MQRankSum=0;QD=32.48;ReadPosRankSum=0.911;SOR=0.822;VarDP=135 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,64:64:99:.:.:2819,0:.:0,0,39,25 0|1:31,40:71:99:0|1:1352724_C_T:1566,0,1149:1352724:17,14,21,19 +chrX 1352821 . C T 3498 . AC=2;AF=0.667;AN=3;AS_AltDP=96;AS_QD=28.22;BaseQRankSum=0.075;DP=125;ExcessHet=0.0000;FS=3.939;MQ=60.00;MQRankSum=0;QD=28.22;ReadPosRankSum=-0.606;SOR=0.977;VarDP=125 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,66:66:99:.:.:2592,0:.:0,0,39,27 0|1:29,30:59:99:0|1:1352821_C_T:936,0,846:1352821:14,15,16,14 +chrX 1352880 . AATCCCCCATGATGGGTTTCATCATGAGTCATAGAACCCCCTATCATGGATTCCATCATGGGTCATGGGAACCCCCATCATGGGTCCCATCATGGTTCATAGG A 2731.97 . AC=2;AF=0.667;AN=3;AS_AltDP=78;AS_QD=21.99;BaseQRankSum=1.362;DP=127;ExcessHet=0.0000;FS=4.440;MQ=58.50;MQRankSum=-1.259;QD=21.99;ReadPosRankSum=-0.233;SOR=0.400;VarDP=126 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,54:54:99:.:.:2099,0:.:0,0,25,29 0|1:48,24:72:99:0|1:1352821_C_T:672,0,1845:1352821:19,29,13,11 +chrX 1353263 . T TCATCATGGGTTCCACCATGAGTCATGGGATCCCC 2855.97 . AC=2;AF=0.667;AN=3;AS_AltDP=77;AS_QD=28.66;BaseQRankSum=2.003;DP=104;ExcessHet=0.0000;FS=3.149;MQ=59.41;MQRankSum=-0.904;QD=28.66;ReadPosRankSum=-2.467;SOR=0.532;VarDP=101 GT:AD:DP:GQ:PL:SB 1:0,50:50:99:2003,0:0,0,24,26 0/1:24,27:51:99:892,0,802:10,14,16,11 +chrX 1353326 . AC A 1480.97 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=19.00;BaseQRankSum=0.021;DP=95;ExcessHet=0.0000;FS=3.692;MQ=59.45;MQRankSum=-1.657;QD=19.00;ReadPosRankSum=0.717;SOR=0.843;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,42:42:99:1046,0:0,0,15,27 0/1:18,20:38:99:474,0,449:10,8,12,8 +chrX 1353805 . A AC 540.97 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=12.08;BaseQRankSum=-2.587;DP=100;ExcessHet=0.0000;FS=4.156;MQ=59.23;MQRankSum=-1.878;QD=12.08;ReadPosRankSum=0.238;SOR=1.133;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:57:22:36:0,22 0/1:22,26:48:99:.:580,0,507:12,10,10,16 +chrX 1353943 . A ACC 37.97 . AC=1;AF=0.333;AN=3;AS_AltDP=4;AS_QD=11.00;BaseQRankSum=0.566;DP=46;ExcessHet=0.0000;FS=0.000;MQ=58.76;MQRankSum=0.792;QD=11.00;ReadPosRankSum=1.006;SOR=0.368;VarDP=7 GT:AD:DP:GQ:MIN_DP:PL:SB 1:3,4:7:77:.:77,0:2,1,2,2 0/0:.:15:25:13:0,25,373 +chrX 1353965 . G A 814 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=31.26;DP=43;ExcessHet=0.0000;FS=0.000;MQ=59.75;QD=38.36;SOR=1.765;VarDP=22 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,22:22:99:.:844,0:0,0,4,10 0/0:.:15:25:13:0,25,373 +chrX 1353970 . A AC 69.97 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=5.74;BaseQRankSum=-0.854;DP=61;ExcessHet=0.0000;FS=0.000;MQ=59.57;MQRankSum=-0.333;QD=5.74;ReadPosRankSum=1.374;SOR=1.329;VarDP=19 GT:AD:DP:GQ:MIN_DP:PL:SB 1:7,12:19:99:.:109,0:1,2,3,9 0/0:.:30:16:30:0,16,714 +chrX 1353976 . A C 859 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=31.18;DP=67;ExcessHet=0.0000;FS=0.000;MQ=59.62;QD=38.65;SOR=1.911;VarDP=23 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,23:23:99:.:889,0:0,0,4,11 0/0:.:32:0:32:0,0,70 +chrX 1354354 . G A 2198 . AC=2;AF=0.667;AN=3;AS_AltDP=75;AS_QD=23.96;BaseQRankSum=-1.372;DP=102;ExcessHet=0.0000;FS=0.000;MQ=59.92;MQRankSum=0;QD=23.96;ReadPosRankSum=-1.523;SOR=0.784;VarDP=93 GT:AD:DP:GQ:PL:SB 1:0,45:45:99:1426,0:0,0,23,22 0/1:18,30:48:99:802,0,472:10,8,20,10 +chrX 1354393 . A C 1984 . AC=2;AF=0.667;AN=3;AS_AltDP=68;AS_QD=22.63;BaseQRankSum=-1.669;DP=96;ExcessHet=0.0000;FS=0.000;MQ=59.91;MQRankSum=0;QD=22.63;ReadPosRankSum=2.692;SOR=0.602;VarDP=89 GT:AD:DP:GQ:PL:SB 1:0,41:41:99:1300,0:0,0,22,19 0/1:21,27:48:99:714,0,566:13,8,18,9 +chrX 1354508 . A G 1511 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=21.70;BaseQRankSum=0.429;DP=81;ExcessHet=0.0000;FS=2.231;MQ=59.81;MQRankSum=0;QD=21.70;ReadPosRankSum=0.96;SOR=0.768;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:863,0:0,0,17,9 0/1:20,25:45:99:678,0,490:9,11,11,14 +chrX 1354641 . A G 301 . AC=2;AF=0.667;AN=3;AS_AltDP=13;AS_QD=13.24;BaseQRankSum=1.693;DP=39;ExcessHet=0.0000;FS=3.682;MQ=57.75;MQRankSum=-0.052;QD=13.24;ReadPosRankSum=-0.605;SOR=1.609;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,4:4:99:111,0:0,0,4,0 0/1:12,9:21:99:220,0,244:6,6,5,4 +chrX 1354978 . A AAGGTGG 50.97 . AC=1;AF=0.333;AN=3;AS_AltDP=2;AS_QD=30.07;DP=22;ExcessHet=0.0000;FS=0.000;MQ=59.90;QD=45.00;SOR=2.303;VarDP=2 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,2:2:90:.:90,0:0,0,2,0 0/0:.:12:0:12:0,0,199 +chrX 1354995 . AGAG A 95.97 . AC=1;AF=0.333;AN=3;AS_AltDP=3;AS_QD=31.23;DP=16;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=45.00;SOR=2.833;VarDP=3 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,3:3:99:.:135,0:0,0,3,0 0/0:.:10:0:10:0,0,29 +chrX 1355020 . AG A 180.97 . AC=1;AF=0.333;AN=3;AS_AltDP=6;AS_QD=33.74;DP=26;ExcessHet=0.0000;FS=0.000;MQ=57.52;QD=36.67;SOR=0.693;VarDP=6 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,6:6:99:.:220,0:0,0,3,3 0/0:.:13:0:13:0,0,49 +chrX 1355080 . A AAGG 230.97 . AC=1;AF=0.333;AN=3;AS_AltDP=6;AS_QD=27.96;DP=29;ExcessHet=0.0000;FS=0.000;MQ=57.64;QD=45.00;SOR=2.303;VarDP=6 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,6:6:99:.:270,0:0,0,5,1 0/0:.:14:0:14:0,0,213 +chrX 1355656 . G T 2005 . AC=2;AF=0.667;AN=3;AS_AltDP=69;AS_QD=22.12;BaseQRankSum=3.878;DP=98;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=22.12;ReadPosRankSum=0.126;SOR=0.717;VarDP=92 GT:AD:DP:GQ:PL:SB 1:4,49:53:99:1505,0:1,3,32,17 0/1:19,20:39:99:530,0,414:13,6,10,10 +chrX 1356186 . CTCCTAAA C 180.97 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=3.14;BaseQRankSum=-0.36;DP=143;ExcessHet=0.0000;FS=1.933;MQ=60.00;MQRankSum=0;QD=3.14;ReadPosRankSum=1.206;SOR=0.597;VarDP=70 GT:AD:DP:GQ:MIN_DP:PL:SB 1:33,37:70:99:.:220,0:15,18,19,18 0/0:.:65:93:65:0,93,1240 +chrX 1356428 . A G 712 . AC=2;AF=0.667;AN=3;AS_AltDP=45;AS_QD=8.24;BaseQRankSum=1.894;DP=95;ExcessHet=0.0000;FS=0.831;MQ=59.90;MQRankSum=1.53;QD=8.24;ReadPosRankSum=0.576;SOR=0.526;VarDP=90 GT:AD:DP:GQ:PL:SB 1:21,23:44:99:125,0:6,15,11,12 0/1:24,22:46:99:617,0,641:9,15,6,16 +chrX 1356785 . A C 3251 . AC=2;AF=0.667;AN=3;AS_AltDP=108;AS_QD=22.94;BaseQRankSum=1.462;DP=149;ExcessHet=0.0000;FS=3.626;MQ=59.70;MQRankSum=0.957;QD=22.94;ReadPosRankSum=0.066;SOR=0.403;VarDP=143 GT:AD:DP:GQ:PL:SB 1:0,78:78:99:2491,0:0,0,34,44 0/1:35,30:65:99:790,0,882:13,22,16,14 +chrX 1356997 . A G 2792 . AC=2;AF=0.667;AN=3;AS_AltDP=94;AS_QD=21.71;BaseQRankSum=0.058;DP=141;ExcessHet=0.0000;FS=3.677;MQ=59.87;MQRankSum=0;QD=21.71;ReadPosRankSum=0.276;SOR=0.389;VarDP=130 GT:AD:DP:GQ:PL:SB 1:0,55:55:99:1781,0:0,0,35,20 0/1:36,39:75:99:1041,0,967:23,13,16,23 +chrX 1357011 . G A 2898 . AC=2;AF=0.667;AN=3;AS_AltDP=94;AS_QD=22.52;BaseQRankSum=2.774;DP=138;ExcessHet=0.0000;FS=3.677;MQ=59.86;MQRankSum=0;QD=22.52;ReadPosRankSum=0.044;SOR=0.389;VarDP=130 GT:AD:DP:GQ:PL:SB 1:0,57:57:99:1871,0:0,0,36,21 0/1:36,37:73:99:1057,0,911:23,13,15,22 +chrX 1357573 . T C 2929 . AC=3;AF=1.00;AN=3;AS_AltDP=95;AS_QD=31.15;DP=98;ExcessHet=0.0000;FS=0.000;MQ=59.69;QD=31.15;SOR=1.053;VarDP=95 GT:AD:DP:GQ:PL:SB 1:0,50:50:99:1531,0:0,0,22,28 1/1:0,45:45:99:1428,134,0:0,0,18,27 +chrX 1357679 . G A 2403 . AC=2;AF=0.667;AN=3;AS_AltDP=81;AS_QD=23.17;BaseQRankSum=2.129;DP=112;ExcessHet=0.0000;FS=4.569;MQ=59.92;MQRankSum=0;QD=23.17;ReadPosRankSum=-0.26;SOR=1.264;VarDP=105 GT:AD:DP:GQ:PL:SB 1:0,56:56:99:1711,0:0,0,19,37 0/1:24,25:49:99:722,0,647:12,12,12,13 +chrX 1359575 . T C 1637 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=22.84;BaseQRankSum=-0.693;DP=74;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=22.84;ReadPosRankSum=-0.29;SOR=0.808;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,36:36:99:1231,0:0,0,17,19 0/1:20,17:37:99:436,0,534:10,10,8,9 +chrX 1360031 . ATC A 1915.97 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=29.18;BaseQRankSum=-0.252;DP=87;ExcessHet=0.0000;FS=2.280;MQ=59.58;MQRankSum=-1.899;QD=29.18;ReadPosRankSum=1.036;SOR=1.132;VarDP=67 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,30:30:99:.:.:1330,0:.:0,0,22,8 0|1:20,17:37:99:0|1:1360031_ATC_A:625,0,751:1360031:10,10,6,11 +chrX 1360057 . A G 2126 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=27.64;BaseQRankSum=1.868;DP=81;ExcessHet=0.0000;FS=11.141;MQ=59.54;MQRankSum=-1.506;QD=27.64;ReadPosRankSum=-1.721;SOR=1.285;VarDP=78 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,37:37:99:.:.:1494,0:.:0,0,27,10 0|1:22,19:41:99:0|1:1360031_ATC_A:662,0,722:1360031:9,13,9,10 +chrX 1360139 . G A 1456 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=19.05;BaseQRankSum=-1.534;DP=88;ExcessHet=0.0000;FS=6.974;MQ=59.77;MQRankSum=0;QD=19.05;ReadPosRankSum=1.593;SOR=1.189;VarDP=78 GT:AD:DP:GQ:PL:SB 1:0,44:44:99:1210,0:0,0,28,16 0/1:20,14:34:99:276,0,499:9,11,8,6 +chrX 1360220 . TTCTCTGTGTCTGTCTCTGTATCTCTCTCCCTTTCTCCCTCCATCTTTCTCTCTCTCTCCTGGTCTCTATCTCCCCCTCTCCCTGTC T 2190.97 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=28.59;BaseQRankSum=1.506;DP=119;ExcessHet=0.0000;FS=0.899;MQ=58.57;MQRankSum=-0.345;QD=28.59;ReadPosRankSum=-1.165;SOR=0.586;VarDP=78 GT:AD:DP:GQ:PL:SB 1:0,39:39:99:1727,0:0,0,19,20 0/1:25,14:39:99:503,0,970:14,11,9,5 +chrX 1361202 . C CCTCT 722.97 . AC=1;AF=0.333;AN=3;AS_AltDP=39;AS_QD=12.49;BaseQRankSum=-0.533;DP=109;ExcessHet=0.0000;FS=1.018;MQ=56.69;MQRankSum=-1.456;QD=12.49;ReadPosRankSum=-1.412;SOR=0.521;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 1:22,39:61:99:.:762,0:13,9,21,18 0/0:.:48:5:48:0,5,1270 +chrX 1361666 . T A 671 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=18.95;BaseQRankSum=1.768;DP=87;ExcessHet=0.0000;FS=5.041;MQ=60.00;MQRankSum=0;QD=18.95;ReadPosRankSum=1.114;SOR=0.835;VarDP=37 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:47:49:0,47 0/1:13,24:37:99:.:701,0,301:8,5,10,14 +chrX 1361755 . GAA G,GA 487.97 . AC=0,2;AF=0.00,0.667;AN=3;AS_AltDP=14,24;AS_QD=7.07,13.87;BaseQRankSum=1.182;DP=98;ExcessHet=0.0000;FS=6.682;MQ=58.89;MQRankSum=0;QD=10.13;ReadPosRankSum=0.824;SOR=0.784;VarDP=52 GT:AD:DP:GQ:PL:SB 2:1,12,14:27:99:379,181,0:0,1,15,11 0/2:13,2,10:25:99:148,157,630,0,234,183:5,8,7,5 +chrX 1362130 . GTC G 1243.97 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=22.91;BaseQRankSum=-0.423;DP=125;ExcessHet=0.0000;FS=2.327;MQ=60.00;MQRankSum=0;QD=22.91;ReadPosRankSum=-1.083;SOR=0.824;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,128 0/1:22,34:56:99:.:1283,0,772:10,12,19,15 +chrX 1362165 . C CCT 1183.97 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=23.08;BaseQRankSum=-1.106;DP=121;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=23.08;ReadPosRankSum=0.103;SOR=0.557;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,128 0/1:18,35:53:99:.:1223,0,549:8,10,17,18 +chrX 1362634 . T C 1085 . AC=1;AF=0.333;AN=3;AS_AltDP=39;AS_QD=18.58;BaseQRankSum=0.372;DP=142;ExcessHet=0.0000;FS=3.894;MQ=60.00;MQRankSum=0;QD=18.58;ReadPosRankSum=0.961;SOR=0.323;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:80:99:80:0,363 0/1:21,39:60:99:.:1115,0,510:6,15,16,23 +chrX 1362690 . G A 1124 . AC=2;AF=0.667;AN=3;AS_AltDP=85;AS_QD=7.90;BaseQRankSum=0.18;DP=150;ExcessHet=0.0000;FS=4.020;MQ=60.00;MQRankSum=0;QD=7.90;ReadPosRankSum=-1.16;SOR=0.438;VarDP=146 GT:AD:DP:GQ:PL:SB 1:41,42:83:15:15,0:18,23,19,23 0/1:20,43:63:99:1139,0,467:4,16,18,25 +chrX 1362769 . T TTTTA 931.97 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=26.97;BaseQRankSum=1.461;DP=116;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=26.97;ReadPosRankSum=-0.672;SOR=0.859;VarDP=36 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,124 0/1:12,24:36:99:.:971,0,432:6,6,11,13 +chrX 1362807 . G A 708 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=16.40;BaseQRankSum=-0.192;DP=110;ExcessHet=0.0000;FS=4.307;MQ=60.00;MQRankSum=0;QD=16.40;ReadPosRankSum=0.382;SOR=0.287;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,124 0/1:18,27:45:99:.:738,0,461:12,6,14,13 +chrX 1363126 . T C 345 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=8.33;BaseQRankSum=1.162;DP=111;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=8.33;ReadPosRankSum=-0.795;SOR=0.723;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,124 0/1:29,16:45:99:.:375,0,762:13,16,7,9 +chrX 1363393 . C T 397 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=10.68;BaseQRankSum=2.248;DP=107;ExcessHet=0.0000;FS=0.000;MQ=58.66;MQRankSum=-1.718;QD=10.68;ReadPosRankSum=-0.58;SOR=0.845;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,124 0/1:24,16:40:99:.:427,0,594:10,14,6,10 +chrX 1363436 . G C 385 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=10.64;BaseQRankSum=0.651;DP=105;ExcessHet=0.0000;FS=1.309;MQ=60.00;MQRankSum=0;QD=10.64;ReadPosRankSum=1.372;SOR=0.402;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,124 0/1:23,16:39:99:.:415,0,638:8,15,7,9 +chrX 1363494 . G A 723 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=17.93;BaseQRankSum=-0.558;DP=107;ExcessHet=0.0000;FS=2.749;MQ=60.00;MQRankSum=0;QD=17.93;ReadPosRankSum=1.235;SOR=0.493;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,124 0/1:15,27:42:99:.:753,0,359:6,9,14,13 +chrX 1364200 . A T 864 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=8.94;BaseQRankSum=0.335;DP=105;ExcessHet=0.0000;FS=0.000;MQ=59.78;MQRankSum=0;QD=8.94;ReadPosRankSum=0.314;SOR=0.683;VarDP=100 GT:AD:DP:GQ:PL:SB 1:23,30:53:99:212,0:11,12,16,14 0/1:20,27:47:99:682,0,424:11,9,13,14 +chrX 1364797 . T A 5325 . AC=3;AF=1.00;AN=3;AS_AltDP=122;AS_QD=28.92;DP=129;ExcessHet=0.0000;FS=0.000;MQ=59.76;MQRankSum=-0.143;QD=42.84;SOR=0.530;VarDP=125 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,57:57:99:.:.:2498,0:.:0,0,23,34 1|1:3,65:68:99:0|1:1364797_T_A:2857,187,0:1364797:1,2,31,34 +chrX 1364798 . A T 5310 . AC=3;AF=1.00;AN=3;AS_AltDP=122;AS_QD=30.50;DP=131;ExcessHet=0.0000;FS=1.579;MQ=59.76;MQRankSum=-0.253;QD=41.72;SOR=0.449;VarDP=128 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,57:57:99:.:.:2498,0:.:0,0,23,34 1|1:6,65:71:99:0|1:1364797_T_A:2842,178,0:1364797:2,4,31,34 +chrX 1367572 . C A 286 . AC=2;AF=0.667;AN=3;AS_AltDP=22;AS_QD=6.08;BaseQRankSum=0.191;DP=54;ExcessHet=0.0000;FS=0.000;MQ=51.96;MQRankSum=1.015;QD=6.08;ReadPosRankSum=0.225;SOR=0.741;VarDP=52 GT:AD:DP:GQ:PL:SB 1:9,10:19:59:59,0:3,6,7,3 0/1:21,12:33:99:257,0,442:17,4,8,4 +chrX 1368251 . G A 864 . AC=2;AF=0.667;AN=3;AS_AltDP=65;AS_QD=7.15;BaseQRankSum=0.069;DP=128;ExcessHet=0.0000;FS=2.284;MQ=59.96;MQRankSum=0;QD=7.15;ReadPosRankSum=-1.401;SOR=0.490;VarDP=125 GT:AD:DP:GQ:PL:SB 1:32,33:65:32:32,0:13,19,15,18 0/1:28,32:60:99:862,0,743:13,15,17,15 +chrX 1368745 . G A 411 . AC=2;AF=0.667;AN=3;AS_AltDP=28;AS_QD=7.47;BaseQRankSum=0.555;DP=61;ExcessHet=0.0000;FS=0.000;MQ=52.08;MQRankSum=0.208;QD=7.47;ReadPosRankSum=0.488;SOR=0.680;VarDP=59 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:15,16:31:77:.:.:77,0:.:5,10,5,11 0|1:16,12:28:99:0|1:1368745_G_A:364,0,498:1368745:6,10,5,7 +chrX 1368776 . C G 247 . AC=1;AF=0.333;AN=3;AS_AltDP=8;AS_QD=12.59;BaseQRankSum=0.6;DP=31;ExcessHet=0.0000;FS=2.780;MQ=48.41;MQRankSum=0.694;QD=12.59;ReadPosRankSum=1.082;SOR=0.105;VarDP=22 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:9:59:9:.:.:0,59 0|1:14,8:22:99:.:0|1:1368745_G_A:277,0,564:1368745:1,13,2,6 +chrX 1368778 . G T 215 . AC=1;AF=0.333;AN=3;AS_AltDP=7;AS_QD=11.67;BaseQRankSum=0;DP=30;ExcessHet=0.0000;FS=6.067;MQ=47.79;MQRankSum=0.378;QD=11.67;ReadPosRankSum=0.971;SOR=0.078;VarDP=21 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:9:59:9:.:.:0,59 0|1:14,7:21:99:.:0|1:1368745_G_A:245,0,567:1368745:1,13,2,5 +chrX 1368785 . A G 173 . AC=1;AF=0.333;AN=3;AS_AltDP=6;AS_QD=10.15;BaseQRankSum=0.246;DP=29;ExcessHet=0.0000;FS=6.952;MQ=47.09;MQRankSum=0;QD=10.15;ReadPosRankSum=1.097;SOR=0.055;VarDP=20 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:9:59:9:.:.:0,59 0|1:14,6:20:99:.:0|1:1368745_G_A:203,0,570:1368745:1,13,2,4 +chrX 1368803 . G A 150 . AC=1;AF=0.333;AN=3;AS_AltDP=5;AS_QD=12.00;BaseQRankSum=0;DP=25;ExcessHet=0.0000;FS=0.000;MQ=42.94;MQRankSum=0.875;QD=12.00;ReadPosRankSum=-1.108;SOR=0.223;VarDP=15 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:9:59:9:.:.:0,59 0|1:10,5:15:99:.:0|1:1368745_G_A:180,0,405:1368745:1,9,1,4 +chrX 1375953 . G C 37 . AC=2;AF=1.00;AN=2;AS_AltDP=2;AS_QD=33.50;DP=3;ExcessHet=0.0000;FS=0.000;MQ=28.54;QD=33.50;SOR=2.303;VarDP=2 GT:AD:DP:GQ:MIN_DP:PL:SB .:.:1:0:1:0,0 1/1:0,2:2:6:.:67,6,0:0,0,2,0 +chrX 1376130 . C T 85 . AC=1;AF=0.333;AN=3;AS_AltDP=4;AS_QD=28.75;DP=7;ExcessHet=0.0000;FS=0.000;MQ=24.00;QD=28.75;SOR=3.258;VarDP=4 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,4:4:99:.:115,0:0,0,4,0 0/0:.:3:0:3:0,0,45 +chrX 1376945 . A C 327 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=10.50;BaseQRankSum=0.338;DP=61;ExcessHet=0.0000;FS=3.176;MQ=39.21;MQRankSum=-1.887;QD=10.50;ReadPosRankSum=1.56;SOR=1.044;VarDP=34 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:43:38:25:.:.:0,38 0|1:21,13:34:99:.:0|1:1376945_A_C:357,0,548:1376945:12,9,5,8 +chrX 1376963 . G A 236 . AC=2;AF=0.667;AN=3;AS_AltDP=33;AS_QD=3.13;BaseQRankSum=1.229;DP=87;ExcessHet=0.0000;FS=5.599;MQ=41.37;MQRankSum=-0.349;QD=3.13;ReadPosRankSum=0.554;SOR=1.135;VarDP=85 GT:AD:DP:GQ:PL:SB 1:22,25:47:99:131,0:13,9,15,10 0/1:30,8:38:99:135,0,1019:12,18,5,3 +chrX 1377062 . G C 475 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=4.81;BaseQRankSum=0.065;DP=109;ExcessHet=0.0000;FS=1.595;MQ=52.95;MQRankSum=-3.283;QD=4.81;ReadPosRankSum=-0.806;SOR=0.545;VarDP=105 GT:AD:DP:GQ:PL:SB 1:29,34:63:2:2,0:19,10,20,14 0/1:21,21:42:99:503,0,603:13,8,13,8 +chrX 1377105 . C CAG 1302.97 . AC=2;AF=0.667;AN=3;AS_AltDP=66;AS_QD=10.40;BaseQRankSum=1.137;DP=140;ExcessHet=0.0000;FS=6.590;MQ=57.22;MQRankSum=-2.968;QD=10.40;ReadPosRankSum=0.941;SOR=0.812;VarDP=129 GT:AD:DP:GQ:PL:SB 1:30,35:65:99:175,0:19,11,15,20 0/1:33,31:64:99:1167,0,1252:16,17,14,17 +chrX 1377287 . C G 184 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=3.63;BaseQRankSum=1.783;DP=129;ExcessHet=0.0000;FS=0.000;MQ=59.91;MQRankSum=-0.885;QD=3.63;ReadPosRankSum=-0.312;SOR=0.607;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 1:27,32:59:99:.:214,0:15,12,17,15 0/0:.:67:55:67:0,55,1229 +chrX 1377633 . G A 104 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=2.35;BaseQRankSum=1.204;DP=128;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=2.35;ReadPosRankSum=0.632;SOR=0.712;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 1:27,30:57:99:.:134,0:10,17,11,19 0/0:.:67:55:67:0,55,1229 +chrX 1377728 . C G 66 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=2.82;BaseQRankSum=3.117;DP=103;ExcessHet=0.0000;FS=1.394;MQ=60.00;MQRankSum=0;QD=2.82;ReadPosRankSum=1.053;SOR=1.165;VarDP=34 GT:AD:DP:GQ:MIN_DP:PL:SB 1:16,18:34:96:.:96,0:9,7,12,6 0/0:.:67:55:67:0,55,1229 +chrX 1377729 . G C 66 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=2.82;BaseQRankSum=2.23;DP=102;ExcessHet=0.0000;FS=1.394;MQ=60.00;MQRankSum=0;QD=2.82;ReadPosRankSum=1.424;SOR=1.165;VarDP=34 GT:AD:DP:GQ:MIN_DP:PL:SB 1:16,18:34:96:.:96,0:9,7,12,6 0/0:.:67:55:67:0,55,1229 +chrX 1380100 . A G 625 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=14.56;BaseQRankSum=-0.178;DP=95;ExcessHet=0.0000;FS=9.010;MQ=59.55;MQRankSum=0;QD=14.56;ReadPosRankSum=0.299;SOR=1.613;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:49:40:0,49 0/1:19,26:45:99:.:655,0,462:11,8,8,18 +chrX 1380544 . G A 73 . AC=1;AF=0.333;AN=3;AS_AltDP=3;AS_QD=25.75;BaseQRankSum=0;DP=51;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=25.75;ReadPosRankSum=1.15;SOR=1.609;VarDP=4 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:56:49:40:.:.:0,49 0|1:1,3:4:33:.:0|1:1380544_G_A:103,0,33:1380544:1,0,3,0 +chrX 1380565 . C T 38 . AC=1;AF=0.333;AN=3;AS_AltDP=6;AS_QD=8.50;BaseQRankSum=-1.242;DP=18;ExcessHet=0.0000;FS=0.000;MQ=57.69;MQRankSum=1.15;QD=8.50;ReadPosRankSum=0;SOR=1.863;VarDP=8 GT:AD:DP:GQ:MIN_DP:PL:SB 1:2,6:8:68:.:68,0:2,0,6,0 0/0:.:6:12:6:0,12,139 +chrX 1380576 . G T 101 . AC=1;AF=0.333;AN=3;AS_AltDP=4;AS_QD=21.83;BaseQRankSum=-1.282;DP=23;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=21.83;ReadPosRankSum=0.842;SOR=1.329;VarDP=6 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:12:99:12:.:.:0,199 0|1:2,4:6:62:.:0|1:1380544_G_A:131,0,62:1380544:2,0,4,0 +chrX 1380613 . T TGAG 395.97 . AC=2;AF=0.667;AN=3;AS_AltDP=15;AS_QD=19.77;BaseQRankSum=-0.301;DP=31;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=19.77;ReadPosRankSum=-1.004;SOR=1.609;VarDP=22 GT:AD:DP:GQ:PL:SB 1:4,7:11:99:119,0:4,0,7,0 0/1:3,8:11:99:316,0,102:3,0,8,0 +chrX 1380656 . AG A 106.97 . AC=1;AF=0.333;AN=3;AS_AltDP=9;AS_QD=9.73;BaseQRankSum=-1.068;DP=27;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=9.73;ReadPosRankSum=2.374;SOR=1.112;VarDP=15 GT:AD:DP:GQ:MIN_DP:PL:SB 1:6,9:15:99:.:146,0:6,0,9,0 0/0:.:14:21:12:0,21,338 +chrX 1380681 . A G 341 . AC=2;AF=0.667;AN=3;AS_AltDP=21;AS_QD=9.28;BaseQRankSum=1.251;DP=42;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=9.28;ReadPosRankSum=2.351;SOR=0.793;VarDP=40 GT:AD:DP:GQ:PL:SB 1:10,12:22:99:112,0:10,0,12,0 0/1:9,9:18:99:259,0,247:9,0,9,0 +chrX 1380877 . A G 884 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=8.02;BaseQRankSum=0.528;DP=119;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=8.02;ReadPosRankSum=-0.041;SOR=0.760;VarDP=114 GT:AD:DP:GQ:PL:SB 1:24,34:58:99:313,0:12,12,17,17 0/1:32,24:56:99:601,0,854:17,15,14,10 +chrX 1380942 . T C 814 . AC=2;AF=0.667;AN=3;AS_AltDP=67;AS_QD=6.30;BaseQRankSum=-0.965;DP=140;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=6.30;ReadPosRankSum=0.118;SOR=0.636;VarDP=134 GT:AD:DP:GQ:PL:SB 1:32,33:65:14:14,0:19,13,21,12 0/1:35,34:69:99:830,0,890:19,16,16,18 +chrX 1380985 . T G 1201 . AC=2;AF=0.667;AN=3;AS_AltDP=72;AS_QD=9.40;BaseQRankSum=-0.503;DP=137;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=9.40;ReadPosRankSum=-0.302;SOR=0.656;VarDP=131 GT:AD:DP:GQ:PL:SB 1:27,38:65:99:361,0:18,9,25,13 0/1:32,34:66:99:870,0,810:17,15,17,17 +chrX 1381116 . T C 250 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=4.91;BaseQRankSum=0.56;DP=118;ExcessHet=0.0000;FS=1.001;MQ=59.84;MQRankSum=1.64;QD=4.91;ReadPosRankSum=1.335;SOR=0.564;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 1:25,32:57:99:.:280,0:10,15,14,18 0/0:.:59:99:59:0,120,1800 +chrX 1381244 . C T 256 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=4.93;BaseQRankSum=-0.114;DP=117;ExcessHet=0.0000;FS=0.000;MQ=59.80;MQRankSum=0.25;QD=4.93;ReadPosRankSum=0.434;SOR=0.811;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 1:24,34:58:99:.:286,0:12,12,16,18 0/0:.:59:99:59:0,120,1800 +chrX 1381505 . C T 619 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=11.80;BaseQRankSum=0.917;DP=116;ExcessHet=0.0000;FS=1.117;MQ=60.00;MQRankSum=0;QD=11.80;ReadPosRankSum=0.913;SOR=0.935;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:58:61:0,58 0/1:30,25:55:99:.:649,0,779:10,20,7,18 +chrX 1381948 . G T 2276 . AC=2;AF=0.667;AN=3;AS_AltDP=66;AS_QD=22.83;BaseQRankSum=0.312;DP=120;ExcessHet=0.0000;FS=0.822;MQ=60.00;MQRankSum=0;QD=22.83;ReadPosRankSum=0.482;SOR=0.804;VarDP=101 GT:AD:DP:GQ:PL:SB 1:3,38:41:99:1578,0:0,0,14,13 0/1:32,28:60:99:728,0,837:16,16,15,13 +chrX 1381968 . C T 289 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=5.15;BaseQRankSum=1.838;DP=131;ExcessHet=0.0000;FS=0.979;MQ=60.00;MQRankSum=0;QD=5.15;ReadPosRankSum=0.362;SOR=0.884;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 1:27,35:62:99:.:319,0:15,12,21,14 0/0:.:66:54:66:0,54,1676 +chrX 1382274 . G GCC 1926.97 . AC=2;AF=0.667;AN=3;AS_AltDP=83;AS_QD=14.35;BaseQRankSum=-1.791;DP=143;ExcessHet=0.0000;FS=0.649;MQ=59.26;MQRankSum=0;QD=14.35;ReadPosRankSum=0.031;SOR=0.601;VarDP=137 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:33,48:81:99:.:.:604,0:.:15,18,20,28 0|1:21,35:56:99:0|1:1382274_G_GCC:1362,0,749:1382274:9,12,19,16 +chrX 1382275 . A ACCGCGCCTGGTCCAAAGTGCCGGGATGACAGGCGTGAGCCACCGCGCCTGGTCCAAAGTGCCGGGATGACAGGCGTGAGC,ACCGCGCCTGGTCCAAAGTGCCGGGATGACAGGCGTGAGC 1924.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=48,35;AS_QD=5.90,15.30;BaseQRankSum=-1.915;DP=144;ExcessHet=0.0000;FS=0.649;MQ=59.27;MQRankSum=0;QD=14.34;ReadPosRankSum=-1.314;SOR=0.601;VarDP=137 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:33,48,0:81:99:.:.:602,0,2058:.:15,18,20,28 0|2:21,0,35:56:99:0|1:1382274_G_GCC:1362,1425,2279,0,854,749:1382274:9,12,19,16 +chrX 1382670 . A AT 305.97 . AC=2;AF=0.667;AN=3;AS_AltDP=40;AS_QD=4.42;BaseQRankSum=1.125;DP=97;ExcessHet=0.0000;FS=1.819;MQ=60.00;MQRankSum=0;QD=4.42;ReadPosRankSum=0.971;SOR=0.512;VarDP=78 GT:AD:DP:GQ:PL:SB 1:24,25:49:41:41,0:13,11,13,12 0/1:14,15:29:99:304,0,263:8,6,7,8 +chrX 1382756 . G GT 259.97 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=9.34;BaseQRankSum=1.347;DP=89;ExcessHet=0.0000;FS=1.428;MQ=60.00;MQRankSum=0;QD=9.34;ReadPosRankSum=0.019;SOR=0.358;VarDP=32 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:54:99:54:0,179 0/1:17,15:32:99:.:299,0,350:11,6,8,7 +chrX 1382782 . G C 322 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=10.67;BaseQRankSum=-2.678;DP=88;ExcessHet=0.0000;FS=7.702;MQ=59.89;MQRankSum=0.974;QD=10.67;ReadPosRankSum=-1.176;SOR=0.846;VarDP=33 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:54:99:54:0,179 0/1:18,15:33:99:.:352,0,517:12,6,6,9 +chrX 1383037 . AGTCTCG A 844.97 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=18.81;BaseQRankSum=-0.848;DP=106;ExcessHet=0.0000;FS=0.000;MQ=59.93;MQRankSum=1.022;QD=18.81;ReadPosRankSum=-0.212;SOR=0.859;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:54:99:54:0,179 0/1:24,23:47:99:.:884,0,897:18,6,18,5 +chrX 1383292 . GGCCTGT G 880.97 . AC=2;AF=0.667;AN=3;AS_AltDP=49;AS_QD=9.48;BaseQRankSum=1.893;DP=102;ExcessHet=0.0000;FS=5.054;MQ=59.81;MQRankSum=-0.924;QD=9.48;ReadPosRankSum=0.704;SOR=0.901;VarDP=97 GT:AD:DP:GQ:PL:SB 1:25,27:52:70:70,0:15,10,13,14 0/1:23,22:45:99:850,0,895:11,12,8,14 +chrX 1383328 . T C 400 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=11.94;BaseQRankSum=-1.598;DP=85;ExcessHet=0.0000;FS=0.000;MQ=59.61;MQRankSum=-1.394;QD=11.94;ReadPosRankSum=-0.855;SOR=0.693;VarDP=36 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:43:35:42:0,35 0/1:18,18:36:99:.:430,0,498:8,10,8,10 +chrX 1383689 . C T 999 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=15.83;BaseQRankSum=0.879;DP=109;ExcessHet=0.0000;FS=2.117;MQ=60.00;MQRankSum=0;QD=15.83;ReadPosRankSum=-0.656;SOR=0.446;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:43:35:42:0,35 0/1:28,37:65:99:.:1029,0,708:18,10,21,16 +chrX 1383947 . A AG 1211.97 . AC=1;AF=0.333;AN=3;AS_AltDP=40;AS_QD=16.46;BaseQRankSum=-0.426;DP=118;ExcessHet=0.0000;FS=0.000;MQ=59.70;MQRankSum=-1.332;QD=16.46;ReadPosRankSum=1.577;SOR=0.663;VarDP=76 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:43:35:42:0,35 0/1:36,40:76:99:.:1251,0,1114:15,21,17,23 +chrX 1384144 . A C 930 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=11.16;BaseQRankSum=-1.141;DP=90;ExcessHet=0.0000;FS=1.833;MQ=59.71;MQRankSum=0;QD=11.16;ReadPosRankSum=2.245;SOR=0.836;VarDP=86 GT:AD:DP:GQ:PL:SB 1:19,27:46:99:197,0:9,10,16,11 0/1:12,28:40:99:763,0,287:6,6,14,14 +chrX 1384474 . T C 854 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=16.68;BaseQRankSum=1.513;DP=123;ExcessHet=0.0000;FS=3.983;MQ=60.00;MQRankSum=0;QD=16.68;ReadPosRankSum=1.565;SOR=0.307;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:69:99:69:0,248 0/1:21,32:53:99:.:884,0,446:14,7,17,15 +chrX 1384500 . C T 793 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=15.53;BaseQRankSum=0.605;DP=124;ExcessHet=0.0000;FS=3.904;MQ=60.00;MQRankSum=0;QD=15.53;ReadPosRankSum=0.386;SOR=0.547;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:69:99:69:0,248 0/1:23,30:53:99:.:823,0,565:14,9,14,16 +chrX 1385385 . A G 249 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=5.47;BaseQRankSum=-2.552;DP=125;ExcessHet=0.0000;FS=2.657;MQ=60.00;MQRankSum=0;QD=5.47;ReadPosRankSum=-1.448;SOR=0.585;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:69:99:69:0,248 0/1:36,15:51:99:.:279,0,997:15,21,8,7 +chrX 1387220 . T C 1191 . AC=2;AF=0.667;AN=3;AS_AltDP=71;AS_QD=9.47;BaseQRankSum=-0.049;DP=130;ExcessHet=0.0000;FS=9.465;MQ=60.00;MQRankSum=0;QD=9.47;ReadPosRankSum=0.862;SOR=0.884;VarDP=129 GT:AD:DP:GQ:PL:SB 1:27,35:62:99:236,0:11,16,19,16 0/1:31,36:67:99:985,0,826:14,17,22,14 +chrX 1387425 . C G 1344 . AC=2;AF=0.667;AN=3;AS_AltDP=72;AS_QD=10.49;BaseQRankSum=1.54;DP=137;ExcessHet=0.0000;FS=2.254;MQ=60.00;MQRankSum=0;QD=10.49;ReadPosRankSum=0.873;SOR=0.924;VarDP=131 GT:AD:DP:GQ:PL:SB 1:25,40:65:99:475,0:13,12,22,18 0/1:34,32:66:99:899,0,903:20,14,22,10 +chrX 1388051 . A G 789 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=13.43;BaseQRankSum=-0.759;DP=130;ExcessHet=0.0000;FS=0.992;MQ=58.37;MQRankSum=0.453;QD=13.43;ReadPosRankSum=0.282;SOR=0.850;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:71:38:67:0,38 0/1:29,32:61:99:.:819,0,761:11,18,11,21 +chrX 1388153 . C T 47 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=1.07;BaseQRankSum=0.836;DP=136;ExcessHet=0.0000;FS=1.910;MQ=55.50;MQRankSum=-0.244;QD=1.07;ReadPosRankSum=1.319;SOR=0.497;VarDP=72 GT:AD:DP:GQ:MIN_DP:PL:SB 1:35,37:72:77:.:77,0:15,20,18,19 0/0:.:62:78:62:0,78,1400 +chrX 1389083 . G A 766 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=13.96;BaseQRankSum=-0.886;DP=128;ExcessHet=0.0000;FS=2.226;MQ=59.72;MQRankSum=-0.881;QD=13.96;ReadPosRankSum=-1.018;SOR=0.784;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:69:99:69:0,1198 0/1:26,31:57:99:.:796,0,658:12,14,17,14 +chrX 1389174 . A G 753 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=6.69;BaseQRankSum=-0.2;DP=122;ExcessHet=0.0000;FS=10.385;MQ=59.87;MQRankSum=0;QD=6.69;ReadPosRankSum=0.409;SOR=1.569;VarDP=117 GT:AD:DP:GQ:PL:SB 1:28,36:64:99:244,0:12,16,11,25 0/1:32,21:53:99:539,0,923:18,14,8,13 +chrX 1389431 . G A 605 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=11.98;BaseQRankSum=-0.216;DP=121;ExcessHet=0.0000;FS=9.901;MQ=60.00;MQRankSum=0;QD=11.98;ReadPosRankSum=-0.322;SOR=0.771;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,1364 0/1:29,24:53:99:.:635,0,793:10,19,14,10 +chrX 1389690 . T C 647 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=13.82;BaseQRankSum=1.012;DP=117;ExcessHet=0.0000;FS=5.913;MQ=60.00;MQRankSum=0;QD=13.82;ReadPosRankSum=0.37;SOR=1.163;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,1364 0/1:25,24:49:99:.:677,0,692:14,11,9,15 +chrX 1390577 . CA C 128.97 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=4.20;BaseQRankSum=-0.197;DP=109;ExcessHet=0.0000;FS=10.357;MQ=59.91;MQRankSum=-0.809;QD=4.20;ReadPosRankSum=1.219;SOR=0.080;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 1:17,23:40:99:.:168,0:14,3,12,11 0/0:.:58:95:58:0,95,1221 +chrX 1390681 . G A 390 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=9.13;BaseQRankSum=0.396;DP=129;ExcessHet=0.0000;FS=1.174;MQ=59.74;MQRankSum=0;QD=9.13;ReadPosRankSum=-1.149;SOR=0.815;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:78:99:78:0,1114 0/1:28,18:46:99:.:420,0,644:15,13,8,10 +chrX 1390818 . C A,CTTAGAGACGGGGTCTTGCTATGTTGCCCTGGCTGGTCTCAAACTCCTGAGCTCAAACGATCCTCCCTGGGCCTCTCCGAGTGCTGGGACACCCCGCCCTGCTAAGTTTAAAAA 740 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=1,5;AS_QD=23.70,22.65;BaseQRankSum=0.296;DP=124;ExcessHet=0.0000;FS=1.775;MQ=59.17;MQRankSum=0.857;QD=22.00;ReadPosRankSum=-1.095;SOR=0.336;VarDP=35 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:4:63:0,4,4 0/2:29,1,5:35:59:.:770,59,798,0,743,868:18,11,3,3 +chrX 1391140 . A AT 414.97 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=8.73;BaseQRankSum=0.398;DP=133;ExcessHet=0.0000;FS=1.090;MQ=60.00;MQRankSum=0;QD=8.73;ReadPosRankSum=0.896;SOR=0.634;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:80:35:71:0,35 0/1:31,21:52:99:.:454,0,770:17,14,10,11 +chrX 1391295 . C G 611 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=5.34;BaseQRankSum=1.296;DP=122;ExcessHet=0.0000;FS=4.604;MQ=60.00;MQRankSum=0;QD=5.34;ReadPosRankSum=0.772;SOR=0.370;VarDP=120 GT:AD:DP:GQ:PL:SB 1:31,38:69:99:274,0:8,23,16,22 0/1:34,17:51:99:367,0,969:14,20,8,9 +chrX 1391744 . C T 1120 . AC=2;AF=0.667;AN=3;AS_AltDP=78;AS_QD=7.42;BaseQRankSum=1.683;DP=159;ExcessHet=0.0000;FS=2.826;MQ=60.00;MQRankSum=0;QD=7.42;ReadPosRankSum=0.193;SOR=0.894;VarDP=155 GT:AD:DP:GQ:PL:SB 1:37,38:75:95:95,0:21,16,18,20 0/1:40,40:80:99:1055,0,1081:17,23,25,15 +chrX 1392191 . T C 884 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=13.85;BaseQRankSum=1.494;DP=145;ExcessHet=0.0000;FS=4.860;MQ=60.00;MQRankSum=0;QD=13.85;ReadPosRankSum=1.232;SOR=0.316;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:79:99:79:0,1800 0/1:32,34:66:99:.:914,0,824:21,11,18,16 +chrX 1392220 . A G 796 . AC=2;AF=0.667;AN=3;AS_AltDP=71;AS_QD=5.90;BaseQRankSum=-0.601;DP=153;ExcessHet=0.0000;FS=3.018;MQ=60.00;MQRankSum=0;QD=5.90;ReadPosRankSum=1.299;SOR=0.727;VarDP=140 GT:AD:DP:GQ:PL:SB 1:37,39:76:39:39,0:17,20,15,24 0/1:32,32:64:99:787,0,791:20,12,18,14 +chrX 1392435 . A G 1037 . AC=1;AF=0.333;AN=3;AS_AltDP=39;AS_QD=15.03;BaseQRankSum=0.646;DP=140;ExcessHet=0.0000;FS=0.000;MQ=59.92;MQRankSum=-0.878;QD=15.03;ReadPosRankSum=-1.578;SOR=0.743;VarDP=71 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,1477 0/1:32,39:71:99:.:1067,0,829:16,16,20,19 +chrX 1392611 . C T 964 . AC=1;AF=0.333;AN=3;AS_AltDP=40;AS_QD=14.00;BaseQRankSum=-1.184;DP=137;ExcessHet=0.0000;FS=8.393;MQ=60.00;MQRankSum=0;QD=14.00;ReadPosRankSum=0.684;SOR=1.586;VarDP=71 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,1477 0/1:31,40:71:99:.:994,0,806:15,16,27,13 +chrX 1392769 . TG T 838.97 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=9.15;BaseQRankSum=1.868;DP=112;ExcessHet=0.0000;FS=8.284;MQ=60.00;MQRankSum=0;QD=9.15;ReadPosRankSum=0.01;SOR=0.322;VarDP=96 GT:AD:DP:GQ:PL:SB 1:19,26:45:99:232,0:5,14,11,15 0/1:24,27:51:99:646,0,541:10,14,16,11 +chrX 1392895 . C T 618 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=12.46;BaseQRankSum=-2.67;DP=100;ExcessHet=0.0000;FS=1.181;MQ=60.00;MQRankSum=0;QD=12.46;ReadPosRankSum=1.832;SOR=1.002;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:46:99:46:0,282 0/1:25,27:52:99:.:648,0,704:8,17,7,20 +chrX 1392941 . C G 661 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=21.59;BaseQRankSum=-0.366;DP=81;ExcessHet=0.0000;FS=10.431;MQ=58.80;MQRankSum=-1.441;QD=21.59;ReadPosRankSum=-0.23;SOR=2.833;VarDP=32 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:46:99:46:0,282 0/1:13,19:32:99:.:691,0,411:5,8,2,17 +chrX 1392950 . TCCTCCCTC T,*,CCCTCCCTC 758 . AC=1,0,1;AF=0.333,0.00,0.333;AN=3;AS_AltDP=4,0,8;AS_QD=33.00,0.00,31.47;BaseQRankSum=-0.614;DP=72;ExcessHet=0.0000;FS=11.139;MQ=58.38;MQRankSum=-0.361;QD=60.62;ReadPosRankSum=0.535;SOR=5.131;VarDP=13 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:46:99:46:0,282,282,282 1/3:1,4,0,8:13:99:.:788,623,665,448,332,640,130,0,306,285:1,0,0,12 +chrX 1392962 . C CCCTCCCGCCTCCCT,CCCTCCCGCCTCCCTCCTCCCGCCTCCCGCCTCCCT 68.97 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=0,4;AS_QD=0.00,12.00;BaseQRankSum=0.497;DP=71;ExcessHet=0.0000;FS=0.000;MQ=57.54;MQRankSum=-1.981;QD=12.00;ReadPosRankSum=1.18;SOR=1.609;VarDP=9 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:46:99:46:0,282,282 0/2:5,0,4:9:99:.:108,148,595,0,234,372:1,4,0,4 +chrX 1392980 . T TCCCGCCTCCCGCCTCCCTCCCTCCC,TCCCTCCTCCCTCCCTCCCGCCTCCCGCCTCCCGCCTCCCTCCCTCCC,TCCCTCCTCCCGCCTCCCGCCTCCCTCCTCCCTCCCTCCCGCCTCCCGCCTCCCGCCTCCCTCCCTCCC 334.97 . AC=1,0,0;AF=0.333,0.00,0.00;AN=3;AS_AltDP=4,0,0;AS_QD=34.00,16.57,28.86;BaseQRankSum=1.097;DP=75;ExcessHet=0.0000;FS=0.000;MQ=56.59;MQRankSum=-2.253;QD=34.00;ReadPosRankSum=-0.269;SOR=0.330;VarDP=11 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:46:99:46:0,282,282,282 0/1:7,4,0,0:11:99:.:374,0,248,258,293,914,172,288,819,811:0,7,0,4 +chrX 1393128 . G C 2072 . AC=3;AF=1.00;AN=3;AS_AltDP=64;AS_QD=32.84;DP=80;ExcessHet=0.0000;FS=0.000;MQ=59.79;QD=32.84;SOR=0.693;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:1087,0:0,0,16,17 1/1:0,31:31:93:1015,93,0:0,0,16,15 +chrX 1393208 . G C 1439 . AC=2;AF=0.667;AN=3;AS_AltDP=50;AS_QD=22.26;BaseQRankSum=1.035;DP=79;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=22.26;ReadPosRankSum=0.444;SOR=0.559;VarDP=66 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:873,0:0,0,18,10 0/1:16,22:38:99:596,0,391:12,4,17,5 +chrX 1393233 . T TCTC 2106.97 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=30.66;BaseQRankSum=0.028;DP=83;ExcessHet=0.0000;FS=1.185;MQ=60.00;MQRankSum=0;QD=30.66;ReadPosRankSum=0.892;SOR=0.487;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:1373,0:0,0,22,10 0/1:18,20:38:99:773,0,696:14,4,15,5 +chrX 1393383 . C A 1723 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=29.22;BaseQRankSum=1.901;DP=104;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=29.22;ReadPosRankSum=0.982;SOR=0.418;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:29:38:0,29 1/1:1,59:60:99:.:1753,166,0:1,0,35,24 +chrX 1393645 . G C 6110 . AC=3;AF=1.00;AN=3;AS_AltDP=151;AS_QD=29.03;DP=152;ExcessHet=0.0000;FS=0.000;MQ=59.84;QD=40.66;SOR=1.186;VarDP=151 GT:AD:DP:GQ:PL:SB 1:0,73:73:99:3258,0:0,0,29,44 1/1:0,78:78:99:2882,234,0:0,0,31,47 +chrX 1393647 . A G 4091 . AC=2;AF=0.667;AN=3;AS_AltDP=109;AS_QD=27.29;BaseQRankSum=-1.508;DP=153;ExcessHet=0.0000;FS=4.468;MQ=59.84;MQRankSum=0;QD=27.29;ReadPosRankSum=-0.612;SOR=0.403;VarDP=151 GT:AD:DP:GQ:PL:SB 1:0,73:73:99:3258,0:0,0,29,44 0/1:42,36:78:99:863,0,1142:14,28,17,19 +chrX 1393680 . A G 1018 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=14.16;BaseQRankSum=-0.258;DP=146;ExcessHet=0.0000;FS=4.799;MQ=60.00;MQRankSum=0;QD=14.16;ReadPosRankSum=0.027;SOR=1.356;VarDP=74 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:99:68:0,1467 0/1:36,38:74:99:.:1048,0,982:15,21,11,27 +chrX 1393850 . C CT,CTT 2193.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=52,24;AS_QD=32.38,32.72;DP=108;ExcessHet=0.0000;FS=0.000;MQ=59.78;QD=29.38;SOR=0.693;VarDP=76 GT:AD:DP:GQ:PL:SB 2:0,9,24:33:99:1117,353,0:0,0,18,15 1/1:0,43,0:43:99:1116,128,0,1116,129,1116:0,0,20,23 +chrX 1394019 . T A 250 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=6.51;BaseQRankSum=-0.23;DP=98;ExcessHet=0.0000;FS=1.232;MQ=60.00;MQRankSum=0;QD=6.51;ReadPosRankSum=2.025;SOR=1.077;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 1:17,26:43:99:.:280,0:8,9,10,16 0/0:.:53:43:53:0,43,1036 +chrX 1395196 . A G 676 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=13.07;BaseQRankSum=-0.992;DP=118;ExcessHet=0.0000;FS=1.054;MQ=60.00;MQRankSum=0;QD=13.07;ReadPosRankSum=-1.523;SOR=1.011;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,773 0/1:27,27:54:99:.:706,0,736:14,13,16,11 +chrX 1396113 . TTTGC T 586.97 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=14.56;BaseQRankSum=0.88;DP=109;ExcessHet=0.0000;FS=2.815;MQ=60.00;MQRankSum=0;QD=14.56;ReadPosRankSum=-1.859;SOR=1.292;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,773 0/1:26,17:43:99:.:626,0,1040:11,15,5,12 +chrX 1397221 . A C 2384 . AC=2;AF=0.667;AN=3;AS_AltDP=81;AS_QD=24.38;BaseQRankSum=-1.136;DP=103;ExcessHet=0.0000;FS=5.115;MQ=59.91;MQRankSum=0;QD=24.38;ReadPosRankSum=-0.525;SOR=0.541;VarDP=99 GT:AD:DP:GQ:PL:SB 1:0,52:52:99:1599,0:0,0,21,31 0/1:18,29:47:99:815,0,474:11,7,17,12 +chrX 1398314 . C A 71 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=2.59;BaseQRankSum=1.153;DP=105;ExcessHet=0.0000;FS=35.495;MQ=59.25;MQRankSum=-1.681;QD=2.59;ReadPosRankSum=0.614;SOR=5.669;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:99:60:0,569 0/1:23,16:39:99:.:101,0,504:13,10,0,16 +chrX 1398808 . C G 3077 . AC=3;AF=1.00;AN=3;AS_AltDP=94;AS_QD=33.05;DP=97;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.05;SOR=0.736;VarDP=94 GT:AD:DP:GQ:PL:SB 1:0,61:61:99:1980,0:0,0,33,28 1/1:0,33:33:99:1127,99,0:0,0,15,18 +chrX 1399285 . C T 679 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=13.38;BaseQRankSum=-0.058;DP=122;ExcessHet=0.0000;FS=5.783;MQ=60.00;MQRankSum=0;QD=13.38;ReadPosRankSum=-0.65;SOR=1.586;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:69:99:69:0,498 0/1:27,26:53:99:.:709,0,760:14,13,18,8 +chrX 1400363 . CTGTG C,CTG 3720.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=63,50;AS_QD=29.36,31.33;DP=137;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.27;SOR=0.990;VarDP=113 GT:AD:DP:GQ:PL:SB 1:0,32,28:60:99:1531,0,188:0,0,33,27 1/2:0,31,22:53:99:2229,844,755,1275,0,1241:0,0,31,22 +chrX 1400386 . T C 702 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=11.81;BaseQRankSum=-1.854;DP=137;ExcessHet=0.0000;FS=5.153;MQ=60.00;MQRankSum=0;QD=11.81;ReadPosRankSum=-0.897;SOR=1.352;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:73:99:73:0,150 0/1:39,23:62:99:.:732,0,1425:20,19,15,8 +chrX 1401053 . G A 3698 . AC=3;AF=1.00;AN=3;AS_AltDP=114;AS_QD=32.70;DP=122;ExcessHet=0.0000;FS=0.000;MQ=59.36;QD=32.70;SOR=0.802;VarDP=114 GT:AD:DP:GQ:PL:SB 1:0,55:55:99:1763,0:0,0,30,25 1/1:0,59:59:99:1965,177,0:0,0,24,35 +chrX 1402102 . C T 4161 . AC=3;AF=1.00;AN=3;AS_AltDP=132;AS_QD=31.75;DP=137;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.75;SOR=1.078;VarDP=132 GT:AD:DP:GQ:PL:SB 1:0,67:67:99:2127,0:0,0,29,38 1/1:0,65:65:99:2064,194,0:0,0,26,39 +chrX 1402667 . TCCCCAATGCAGCTTCCTTCCCCCTCCCAAAATGCAGCCTCTGTCCCCACTC T 199.97 . AC=1;AF=0.333;AN=3;AS_AltDP=6;AS_QD=29.88;DP=65;ExcessHet=0.0000;FS=0.000;MQ=54.28;MQRankSum=-0.619;QD=29.88;SOR=0.693;VarDP=8 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:44:70:44:0,70 0/1:2,6:8:60:.:239,0,60:0,2,1,5 +chrX 1404130 . ATGGT A 1040.97 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=24.55;BaseQRankSum=2.063;DP=50;ExcessHet=0.0000;FS=3.155;MQ=59.00;MQRankSum=-0.282;QD=24.55;ReadPosRankSum=1.128;SOR=1.426;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:25:5:0,25 0/1:15,29:44:99:.:1080,0,516:8,7,13,6 +chrX 1404531 . A G 497 . AC=2;AF=0.667;AN=3;AS_AltDP=45;AS_QD=5.43;BaseQRankSum=0.224;DP=101;ExcessHet=0.0000;FS=2.668;MQ=59.65;MQRankSum=0.679;QD=5.43;ReadPosRankSum=1.476;SOR=1.038;VarDP=97 GT:AD:DP:GQ:PL:SB 1:22,25:47:99:103,0:10,12,13,12 0/1:30,20:50:99:424,0,803:16,14,13,7 +chrX 1404690 . G GTAGA 3082.97 . AC=3;AF=1.00;AN=3;AS_AltDP=72;AS_QD=25.07;BaseQRankSum=1.034;DP=90;ExcessHet=0.0000;FS=9.217;MQ=51.36;MQRankSum=-0.674;QD=41.08;ReadPosRankSum=1.93;SOR=0.044;VarDP=76 GT:AD:DP:GQ:PL:SB 1:3,39:42:99:1718,0:0,3,22,17 1/1:1,33:34:57:1404,57,0:0,1,13,20 +chrX 1406505 . G A 479 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=10.83;BaseQRankSum=0.535;DP=102;ExcessHet=0.0000;FS=8.463;MQ=60.00;MQRankSum=0;QD=10.83;ReadPosRankSum=-0.538;SOR=1.270;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:55:99:55:0,853 0/1:27,20:47:99:.:509,0,738:16,11,7,13 +chrX 1406606 . A G 3486 . AC=3;AF=1.00;AN=3;AS_AltDP=109;AS_QD=32.26;DP=118;ExcessHet=0.0000;FS=0.000;MQ=59.86;QD=32.26;SOR=0.711;VarDP=109 GT:AD:DP:GQ:PL:SB 1:0,54:54:99:1745,0:0,0,25,29 1/1:0,55:55:99:1771,165,0:0,0,29,26 +chrX 1407042 . GTAGA G 3820.97 . AC=3;AF=1.00;AN=3;AS_AltDP=93;AS_QD=33.21;BaseQRankSum=2.041;DP=104;ExcessHet=0.0000;FS=0.000;MQ=59.91;MQRankSum=2.209;QD=39.79;ReadPosRankSum=1.623;SOR=0.758;VarDP=97 GT:AD:DP:GQ:PL:SB 1:0,49:49:99:2047,0:0,0,29,20 1/1:4,44:48:99:1813,117,0:2,2,19,25 +chrX 1410509 . G A 3679 . AC=3;AF=1.00;AN=3;AS_AltDP=110;AS_QD=33.72;DP=113;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.72;SOR=0.806;VarDP=110 GT:AD:DP:GQ:PL:SB 1:0,60:60:99:2021,0:0,0,32,28 1/1:0,50:50:99:1688,150,0:0,0,26,24 +chrX 1410576 . A G 3969 . AC=3;AF=1.00;AN=3;AS_AltDP=124;AS_QD=32.25;DP=131;ExcessHet=0.0000;FS=0.000;MQ=59.96;QD=32.25;SOR=0.725;VarDP=124 GT:AD:DP:GQ:PL:SB 1:0,74:74:99:2409,0:0,0,41,33 1/1:0,50:50:99:1590,150,0:0,0,20,30 +chrX 1410658 . C T 4114 . AC=3;AF=1.00;AN=3;AS_AltDP=124;AS_QD=33.42;DP=127;ExcessHet=0.0000;FS=0.000;MQ=59.96;QD=33.42;SOR=0.725;VarDP=124 GT:AD:DP:GQ:PL:SB 1:0,65:65:99:2199,0:0,0,33,32 1/1:0,59:59:99:1945,177,0:0,0,28,31 +chrX 1410747 . GTGATGCA G 5022.97 . AC=3;AF=1.00;AN=3;AS_AltDP=114;AS_QD=30.79;DP=129;ExcessHet=0.0000;FS=0.000;MQ=59.79;QD=44.40;SOR=0.802;VarDP=114 GT:AD:DP:GQ:PL:SB 1:0,55:55:99:2427,0:0,0,27,28 1/1:0,59:59:99:2635,178,0:0,0,33,26 +chrX 1410836 . C G 5870 . AC=3;AF=1.00;AN=3;AS_AltDP=132;AS_QD=20.22;DP=133;ExcessHet=0.0000;FS=0.000;MQ=59.75;QD=44.70;SOR=0.962;VarDP=132 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,73:73:99:.:.:3267,0:.:0,0,40,33 1|1:0,59:59:99:0|1:1410836_C_G:2633,178,0:1410836:0,0,34,25 +chrX 1410837 . C T 5895 . AC=3;AF=1.00;AN=3;AS_AltDP=133;AS_QD=27.58;DP=133;ExcessHet=0.0000;FS=0.000;MQ=59.75;QD=44.55;SOR=0.941;VarDP=133 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,74:74:99:.:.:3292,0:.:0,0,40,34 1|1:0,59:59:99:0|1:1410836_C_G:2633,178,0:1410836:0,0,34,25 +chrX 1410847 . T G 6033 . AC=3;AF=1.00;AN=3;AS_AltDP=139;AS_QD=32.12;DP=140;ExcessHet=0.0000;FS=0.000;MQ=59.76;QD=43.62;SOR=0.965;VarDP=139 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,75:75:99:.:.:3286,0:.:0,0,41,34 1|1:0,64:64:99:0|1:1410836_C_G:2777,193,0:1410836:0,0,37,27 +chrX 1410969 . C T 3786 . AC=3;AF=1.00;AN=3;AS_AltDP=114;AS_QD=33.18;BaseQRankSum=2.386;DP=117;ExcessHet=0.0000;FS=0.000;MQ=59.96;MQRankSum=0;QD=33.18;ReadPosRankSum=-1.398;SOR=0.268;VarDP=115 GT:AD:DP:GQ:PL:SB 1:0,53:53:99:1796,0:0,0,21,32 1/1:1,61:62:99:2020,176,0:0,1,33,28 +chrX 1411061 . A C 3077 . AC=3;AF=1.00;AN=3;AS_AltDP=100;AS_QD=31.07;DP=101;ExcessHet=0.0000;FS=0.000;MQ=59.93;QD=31.07;SOR=1.167;VarDP=100 GT:AD:DP:GQ:PL:SB 1:0,45:45:99:1418,0:0,0,26,19 1/1:0,55:55:99:1689,164,0:0,0,34,21 +chrX 1411108 . C G 3733 . AC=3;AF=1.00;AN=3;AS_AltDP=118;AS_QD=31.89;DP=121;ExcessHet=0.0000;FS=0.000;MQ=59.23;QD=31.89;SOR=0.727;VarDP=118 GT:AD:DP:GQ:PL:SB 1:0,49:49:99:1592,0:0,0,23,26 1/1:0,69:69:99:2171,206,0:0,0,37,32 +chrX 1411168 . A C 4989 . AC=3;AF=1.00;AN=3;AS_AltDP=112;AS_QD=25.70;DP=113;ExcessHet=0.0000;FS=0.000;MQ=59.90;QD=44.81;SOR=0.804;VarDP=112 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,51:51:99:.:.:2274,0:.:0,0,27,24 1|1:0,61:61:99:0|1:1411168_A_C:2745,184,0:1411168:0,0,32,29 +chrX 1411171 . G A 4990 . AC=3;AF=1.00;AN=3;AS_AltDP=112;AS_QD=34.17;DP=112;ExcessHet=0.0000;FS=0.000;MQ=59.97;QD=44.82;SOR=0.844;VarDP=112 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,51:51:99:.:.:2275,0:.:0,0,28,23 1|1:0,61:61:99:0|1:1411168_A_C:2745,184,0:1411168:0,0,32,29 +chrX 1411191 . A C 4805 . AC=3;AF=1.00;AN=3;AS_AltDP=113;AS_QD=33.79;DP=117;ExcessHet=0.0000;FS=0.000;MQ=59.97;QD=42.79;SOR=0.822;VarDP=113 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,49:49:99:.:.:2109,0:.:0,0,27,22 1|1:0,64:64:99:0|1:1411168_A_C:2726,192,0:1411168:0,0,33,31 +chrX 1411240 . G GGA 4427.97 . AC=3;AF=1.00;AN=3;AS_AltDP=109;AS_QD=27.79;DP=117;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=40.98;SOR=1.049;VarDP=109 GT:AD:DP:GQ:PL:SB 1:0,56:56:99:2271,0:0,0,34,22 1/1:0,53:53:99:2196,159,0:0,0,29,24 +chrX 1411335 . C G 1023 . AC=2;AF=0.667;AN=3;AS_AltDP=80;AS_QD=6.58;BaseQRankSum=0.201;DP=161;ExcessHet=0.0000;FS=1.970;MQ=60.00;MQRankSum=0;QD=6.58;ReadPosRankSum=0.826;SOR=0.712;VarDP=160 GT:AD:DP:GQ:PL:SB 1:40,42:82:41:41,0:20,20,27,15 0/1:40,38:78:99:1012,0,1101:18,22,15,23 +chrX 1411420 . C T 870 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=13.85;BaseQRankSum=0.703;DP=150;ExcessHet=0.0000;FS=0.950;MQ=60.00;MQRankSum=0;QD=13.85;ReadPosRankSum=-0.053;SOR=0.876;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:81:99:81:0,153 0/1:32,33:65:99:.:900,0,847:14,18,13,20 +chrX 1411565 . T C 1083 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=18.55;BaseQRankSum=-2.312;DP=141;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=18.55;ReadPosRankSum=-0.348;SOR=0.818;VarDP=60 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:81:99:81:.:.:0,153 0|1:29,31:60:99:.:0|1:1411565_T_C:1113,0,1093:1411565:14,15,14,17 +chrX 1411590 . G A 995 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=16.80;BaseQRankSum=0.203;DP=142;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=16.80;ReadPosRankSum=-0.252;SOR=0.638;VarDP=61 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:81:99:81:.:.:0,153 0|1:33,28:61:99:.:0|1:1411565_T_C:1025,0,1219:1411565:16,17,14,14 +chrX 1411624 . G GCTGACACTTCAGCAACACGGCTGTAAA 4816.97 . AC=2;AF=0.667;AN=3;AS_AltDP=112;AS_QD=33.72;BaseQRankSum=1.329;DP=154;ExcessHet=0.0000;FS=3.695;MQ=60.00;MQRankSum=0;QD=33.72;ReadPosRankSum=-1.209;SOR=0.840;VarDP=144 GT:AD:DP:GQ:PL:SB 1:0,84:84:99:3777,0:0,0,39,45 0/1:32,28:60:99:1079,0,1260:17,15,11,17 +chrX 1411685 . C A 242 . AC=1;AF=0.333;AN=3;AS_AltDP=46;AS_QD=3.24;BaseQRankSum=0.694;DP=148;ExcessHet=0.0000;FS=7.314;MQ=60.00;MQRankSum=0;QD=3.24;ReadPosRankSum=-1.321;SOR=1.453;VarDP=84 GT:AD:DP:GQ:MIN_DP:PL:SB 1:38,46:84:99:.:272,0:18,20,15,31 0/0:.:60:30:59:0,30,1633 +chrX 1411735 . AAG A 973.97 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=19.48;BaseQRankSum=-1.401;DP=116;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=19.48;ReadPosRankSum=0.037;SOR=0.865;VarDP=52 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:68:45:63:.:.:0,45 0|1:26,26:52:99:.:0|1:1411735_AAG_A:1013,0,1013:1411735:9,17,8,18 +chrX 1411738 . A C 980 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=19.06;BaseQRankSum=1.07;DP=117;ExcessHet=0.0000;FS=1.116;MQ=60.00;MQRankSum=0;QD=19.06;ReadPosRankSum=0.192;SOR=0.980;VarDP=53 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:68:45:63:.:.:0,45 0|1:27,26:53:99:.:0|1:1411735_AAG_A:1010,0,1045:1411735:10,17,8,18 +chrX 1411747 . T C 1012 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=19.30;BaseQRankSum=-1.386;DP=118;ExcessHet=0.0000;FS=1.087;MQ=60.00;MQRankSum=0;QD=19.30;ReadPosRankSum=0.837;SOR=1.029;VarDP=54 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:68:45:63:.:.:0,45 0|1:27,27:54:99:.:0|1:1411735_AAG_A:1042,0,1032:1411735:11,16,9,18 +chrX 1411806 . CT C,CTT,CTTT,CTTTTTTTTT 1145.97 . AC=0,1,1,1;AF=0.00,0.333,0.333,0.333;AN=3;AS_AltDP=3,19,8,8;AS_QD=0.00,33.25,29.34,33.57;BaseQRankSum=2.03;DP=106;ExcessHet=0.0000;FS=3.606;MQ=57.59;MQRankSum=0;QD=30.38;ReadPosRankSum=1.429;SOR=0.733;VarDP=39 GT:AD:DP:GQ:PL:SB 2:1,3,14,0,0:18:99:178,395,0,333,333:0,1,11,6 3/4:0,0,5,8,8:21:99:1007,769,697,628,556,520,212,193,113,102,296,278,106,0,393:0,0,11,10 +chrX 1411988 . T G 749 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=12.56;BaseQRankSum=-0.566;DP=121;ExcessHet=0.0000;FS=2.178;MQ=59.05;MQRankSum=-1.498;QD=12.56;ReadPosRankSum=0.296;SOR=1.051;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:55:99:55:0,233 0/1:33,29:62:99:.:779,0,928:14,19,10,19 +chrX 1412107 . A G 834 . AC=2;AF=0.667;AN=3;AS_AltDP=68;AS_QD=6.35;BaseQRankSum=-0.545;DP=142;ExcessHet=0.0000;FS=9.270;MQ=60.00;MQRankSum=0;QD=6.35;ReadPosRankSum=1.074;SOR=0.269;VarDP=136 GT:AD:DP:GQ:PL:SB 1:32,35:67:59:59,0:12,20,15,20 0/1:36,33:69:99:805,0,954:12,24,19,14 +chrX 1412291 . G A 885 . AC=1;AF=0.500;AN=2;AS_AltDP=34;AS_QD=12.71;BaseQRankSum=1.059;DP=133;ExcessHet=0.0000;FS=9.865;MQ=59.21;MQRankSum=1.678;QD=12.71;ReadPosRankSum=0.892;SOR=1.335;VarDP=72 GT:AD:DP:GQ:MIN_DP:PL:SB .:.:60:0:60:0,0 0/1:38,34:72:99:.:915,0,1441:17,21,22,12 +chrX 1412311 . T C 1437 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=20.10;BaseQRankSum=-0.133;DP=135;ExcessHet=0.0000;FS=6.184;MQ=59.21;MQRankSum=-1.669;QD=20.10;ReadPosRankSum=-0.519;SOR=0.465;VarDP=73 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:99:62:.:.:0,219 0|1:35,38:73:99:.:0|1:1412311_T_C:1467,0,1355:1412311:22,13,18,20 +chrX 1412315 . G C 1440 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=20.42;BaseQRankSum=-0.145;DP=135;ExcessHet=0.0000;FS=6.105;MQ=59.21;MQRankSum=-1.645;QD=20.42;ReadPosRankSum=-0.513;SOR=0.486;VarDP=72 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:99:62:.:.:0,219 0|1:34,38:72:99:.:0|1:1412311_T_C:1470,0,1313:1412311:21,13,18,20 +chrX 1412320 . C T 913 . AC=1;AF=0.500;AN=2;AS_AltDP=35;AS_QD=12.74;BaseQRankSum=1.213;DP=138;ExcessHet=0.0000;FS=4.444;MQ=59.23;MQRankSum=1.679;QD=12.74;ReadPosRankSum=0.514;SOR=1.118;VarDP=74 GT:AD:DP:GQ:MIN_DP:PL:SB .:.:63:0:63:0,0 0/1:39,35:74:99:.:943,0,1522:19,20,21,14 +chrX 1412372 . T C 632 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=5.43;BaseQRankSum=-1.353;DP=130;ExcessHet=0.0000;FS=2.298;MQ=59.77;MQRankSum=0;QD=5.43;ReadPosRankSum=-0.54;SOR=0.919;VarDP=122 GT:AD:DP:GQ:PL:SB 1:31,33:64:14:14,0:12,19,13,20 0/1:32,26:58:99:648,0,887:18,14,12,14 +chrX 1412523 . T C 709 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=11.55;BaseQRankSum=-0.611;DP=130;ExcessHet=0.0000;FS=0.000;MQ=59.08;MQRankSum=1.315;QD=11.55;ReadPosRankSum=0.572;SOR=0.588;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,452 0/1:34,30:64:99:.:739,0,1190:18,16,15,15 +chrX 1412549 . G T 766 . AC=1;AF=0.500;AN=2;AS_AltDP=30;AS_QD=13.49;BaseQRankSum=0.617;DP=123;ExcessHet=0.0000;FS=7.069;MQ=59.69;MQRankSum=1.475;QD=13.49;ReadPosRankSum=0.531;SOR=0.977;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB .:.:63:0:63:0,0 0/1:29,30:59:99:.:796,0,1128:12,17,18,12 +chrX 1412564 . C T 740 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=12.22;BaseQRankSum=1.816;DP=125;ExcessHet=0.0000;FS=9.031;MQ=59.71;MQRankSum=-1.623;QD=12.22;ReadPosRankSum=0.382;SOR=1.451;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,237 0/1:36,27:63:99:.:770,0,1307:20,16,9,18 +chrX 1412627 . C G 713 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=11.43;BaseQRankSum=1.023;DP=128;ExcessHet=0.0000;FS=16.869;MQ=59.76;MQRankSum=0;QD=11.43;ReadPosRankSum=-1.073;SOR=2.522;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,237 0/1:35,30:65:99:.:743,0,857:17,18,6,24 +chrX 1412665 . C T 1355 . AC=2;AF=0.667;AN=3;AS_AltDP=75;AS_QD=10.49;BaseQRankSum=0.714;DP=139;ExcessHet=0.0000;FS=0.000;MQ=59.93;MQRankSum=0.304;QD=10.49;ReadPosRankSum=0.32;SOR=0.690;VarDP=132 GT:AD:DP:GQ:PL:SB 1:27,40:67:99:474,0:16,11,19,21 0/1:30,35:65:99:911,0,761:9,21,14,21 +chrX 1412755 . C T 1010 . AC=2;AF=0.667;AN=3;AS_AltDP=66;AS_QD=8.52;BaseQRankSum=2.24;DP=129;ExcessHet=0.0000;FS=3.304;MQ=60.00;MQRankSum=0;QD=8.52;ReadPosRankSum=1.127;SOR=0.445;VarDP=122 GT:AD:DP:GQ:PL:SB 1:31,39:70:99:280,0:19,12,20,19 0/1:25,27:52:99:760,0,633:14,11,14,13 +chrX 1412872 . C G 1260 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=11.52;BaseQRankSum=2.127;DP=113;ExcessHet=0.0000;FS=7.355;MQ=60.00;MQRankSum=0;QD=11.52;ReadPosRankSum=1.086;SOR=1.182;VarDP=112 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:27,33:60:99:.:.:377,0:.:12,15,18,15 0|1:28,24:52:99:0|1:1412872_C_G:913,0,1048:1412872:14,14,17,7 +chrX 1412877 . T C 1307 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=12.50;BaseQRankSum=-0.065;DP=107;ExcessHet=0.0000;FS=7.486;MQ=60.00;MQRankSum=0;QD=12.50;ReadPosRankSum=0.66;SOR=1.196;VarDP=107 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:26,33:59:99:.:.:412,0:.:11,15,18,15 0|1:24,24:48:99:0|1:1412872_C_G:925,0,925:1412872:13,11,17,7 +chrX 1412945 . A G 842 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=8.30;BaseQRankSum=-0.37;DP=109;ExcessHet=0.0000;FS=0.742;MQ=60.00;MQRankSum=0;QD=8.30;ReadPosRankSum=1.675;SOR=0.839;VarDP=105 GT:AD:DP:GQ:PL:SB 1:26,31:57:99:134,0:15,11,16,15 0/1:22,26:48:99:738,0,595:12,10,18,8 +chrX 1412958 . AAG A 720.97 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=16.89;BaseQRankSum=-0.857;DP=120;ExcessHet=0.0000;FS=2.597;MQ=60.00;MQRankSum=0;QD=16.89;ReadPosRankSum=0.341;SOR=0.366;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:72:64:72:0,64 0/1:23,22:45:99:.:760,0,851:15,8,12,10 +chrX 1413069 . G C 1088 . AC=1;AF=0.333;AN=3;AS_AltDP=43;AS_QD=17.47;BaseQRankSum=-1.781;DP=137;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=17.47;ReadPosRankSum=0.164;SOR=0.573;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:72:64:72:0,64 0/1:21,43:64:99:.:1118,0,496:9,12,20,23 +chrX 1413244 . C G 1635 . AC=2;AF=0.667;AN=3;AS_AltDP=70;AS_QD=12.24;BaseQRankSum=2.048;DP=138;ExcessHet=0.0000;FS=6.292;MQ=59.86;MQRankSum=0;QD=12.24;ReadPosRankSum=1.231;SOR=0.589;VarDP=136 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:28,45:73:99:.:.:761,0:.:17,11,19,26 0|1:38,25:63:99:0|1:1413244_C_G:904,0,1509:1413244:21,17,14,11 +chrX 1413253 . G T 6012 . AC=3;AF=1.00;AN=3;AS_AltDP=135;AS_QD=24.85;DP=139;ExcessHet=0.0000;FS=0.000;MQ=59.80;QD=44.76;SOR=0.769;VarDP=135 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,72:72:99:.:.:3239,0:.:0,0,35,37 1|1:0,63:63:99:0|1:1413244_C_G:2803,190,0:1413244:0,0,35,28 +chrX 1413254 . C T 1476 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=23.53;BaseQRankSum=-0.891;DP=138;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=23.53;ReadPosRankSum=-0.619;SOR=0.610;VarDP=64 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:72:99:72:.:.:0,437 0|1:26,38:64:99:.:1|0:1413244_C_G:1506,0,935:1413244:15,11,21,17 +chrX 1413348 . A AGGC 1062.97 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=17.22;BaseQRankSum=-0.726;DP=138;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=17.22;ReadPosRankSum=-0.283;SOR=0.711;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:72:99:72:0,437 0/1:35,29:64:99:.:1102,0,1382:17,18,15,14 +chrX 1414720 . T C 3581 . AC=3;AF=1.00;AN=3;AS_AltDP=109;AS_QD=33.13;DP=111;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.13;SOR=0.711;VarDP=109 GT:AD:DP:GQ:PL:SB 1:0,57:57:99:1899,0:0,0,29,28 1/1:0,52:52:99:1712,156,0:0,0,26,26 +chrX 1414803 . G A 5098 . AC=3;AF=1.00;AN=3;AS_AltDP=115;AS_QD=34.24;DP=118;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.59;SOR=1.169;VarDP=115 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,50:50:99:.:.:2204,0:.:0,0,18,32 1|1:0,65:65:99:0|1:1414803_G_A:2924,196,0:1414803:0,0,28,37 +chrX 1414804 . C T 5233 . AC=3;AF=1.00;AN=3;AS_AltDP=118;AS_QD=29.28;DP=120;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.60;SOR=1.131;VarDP=118 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,51:51:99:.:.:2249,0:.:0,0,19,32 1|1:0,67:67:99:0|1:1414803_G_A:3014,202,0:1414803:0,0,29,38 +chrX 1414824 . G C,T 5461 . AC=0,3;AF=0.00,1.00;AN=3;AS_AltDP=3,119;AS_QD=30.91,28.83;DP=124;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=45.01;SOR=0.906;VarDP=122 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 2:0,3,56:59:99:.:.:2656,1832,0:.:0,0,26,33 2|2:0,0,63:63:99:0|1:1414803_G_A:2835,2835,2835,190,190,0:1414803:0,0,29,34 +chrX 1414846 . T C 5550 . AC=3;AF=1.00;AN=3;AS_AltDP=124;AS_QD=29.20;DP=125;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=45.00;SOR=0.865;VarDP=124 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,63:63:99:.:.:2835,0:.:0,0,29,34 1|1:0,61:61:99:0|1:1414803_G_A:2745,184,0:1414803:0,0,28,33 +chrX 1414856 . T G 5405 . AC=3;AF=1.00;AN=3;AS_AltDP=121;AS_QD=37.08;DP=122;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.92;SOR=0.850;VarDP=121 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,63:63:99:.:.:2835,0:.:0,0,31,32 1|1:0,58:58:99:0|1:1414803_G_A:2600,175,0:1414803:0,0,25,33 +chrX 1414878 . T C 5172 . AC=3;AF=1.00;AN=3;AS_AltDP=119;AS_QD=24.99;DP=124;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.71;SOR=0.973;VarDP=119 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,61:61:99:.:.:2684,0:.:0,0,28,33 1|1:0,58:58:99:0|1:1414803_G_A:2518,175,0:1414803:0,0,24,34 +chrX 1414942 . ATT A 4156.97 . AC=3;AF=1.00;AN=3;AS_AltDP=102;AS_QD=29.60;DP=111;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=41.14;SOR=0.859;VarDP=102 GT:AD:DP:GQ:PL:SB 1:0,50:50:99:2056,0:0,0,30,20 1/1:0,52:52:99:2140,157,0:0,0,25,27 +chrX 1415053 . G C 776 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=13.66;BaseQRankSum=0.141;DP=110;ExcessHet=0.0000;FS=0.000;MQ=59.60;MQRankSum=-1.378;QD=13.66;ReadPosRankSum=-1.16;SOR=0.627;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:52:58:50:0,58 0/1:29,30:59:99:.:806,0,756:16,13,16,14 +chrX 1415064 . CT C 4919.97 . AC=3;AF=1.00;AN=3;AS_AltDP=112;AS_QD=30.48;DP=114;ExcessHet=0.0000;FS=0.000;MQ=59.61;QD=44.28;SOR=0.970;VarDP=112 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,50:50:99:.:.:2215,0:.:0,0,27,23 1|1:0,62:62:99:0|1:1415064_CT_C:2744,187,0:1415064:0,0,36,26 +chrX 1415071 . G A 4807 . AC=3;AF=1.00;AN=3;AS_AltDP=110;AS_QD=28.65;DP=114;ExcessHet=0.0000;FS=0.000;MQ=59.37;QD=43.97;SOR=0.846;VarDP=110 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,50:50:99:.:.:2205,0:.:0,0,24,26 1|1:0,60:60:99:0|1:1415064_CT_C:2632,181,0:1415064:0,0,35,25 +chrX 1415101 . T C 3826 . AC=3;AF=1.00;AN=3;AS_AltDP=117;AS_QD=32.96;DP=124;ExcessHet=0.0000;FS=0.000;MQ=59.66;QD=32.96;SOR=1.159;VarDP=117 GT:AD:DP:GQ:PL:SB 1:0,54:54:99:1757,0:0,0,27,27 1/1:0,63:63:99:2099,189,0:0,0,43,20 +chrX 1415150 . T C 3810 . AC=3;AF=1.00;AN=3;AS_AltDP=124;AS_QD=30.97;DP=127;ExcessHet=0.0000;FS=0.000;MQ=59.23;QD=30.97;SOR=1.151;VarDP=124 GT:AD:DP:GQ:PL:SB 1:0,60:60:99:1863,0:0,0,33,27 1/1:0,64:64:99:1977,191,0:0,0,41,23 +chrX 1415204 . G C 5420 . AC=3;AF=1.00;AN=3;AS_AltDP=125;AS_QD=28.72;DP=128;ExcessHet=0.0000;FS=0.000;MQ=59.17;QD=43.60;SOR=1.082;VarDP=125 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,64:64:99:.:.:2814,0:.:0,0,36,28 1|1:0,61:61:99:0|1:1415204_G_C:2636,183,0:1415204:0,0,37,24 +chrX 1415214 . T TCCAGGCGTGAGCCTGGGCACGTGGC 6049.97 . AC=3;AF=1.00;AN=3;AS_AltDP=138;AS_QD=27.29;DP=141;ExcessHet=0.0000;FS=0.000;MQ=59.24;QD=44.12;SOR=1.059;VarDP=138 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,70:70:99:.:.:3082,0:.:0,0,40,30 1|1:0,68:68:99:0|1:1415204_G_C:3007,204,0:1415204:0,0,40,28 +chrX 1415292 . A G 5260 . AC=3;AF=1.00;AN=3;AS_AltDP=119;AS_QD=28.06;DP=122;ExcessHet=0.0000;FS=0.000;MQ=59.97;QD=44.45;SOR=0.710;VarDP=119 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,54:54:99:.:.:2419,0:.:0,0,29,25 1|1:0,65:65:99:0|1:1415292_A_G:2871,196,0:1415292:0,0,30,35 +chrX 1415294 . A C 5260 . AC=3;AF=1.00;AN=3;AS_AltDP=119;AS_QD=23.76;DP=121;ExcessHet=0.0000;FS=0.000;MQ=59.97;QD=44.45;SOR=0.710;VarDP=119 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,54:54:99:.:.:2419,0:.:0,0,29,25 1|1:0,65:65:99:0|1:1415292_A_G:2871,196,0:1415292:0,0,30,35 +chrX 1415323 . C T 3328 . AC=3;AF=1.00;AN=3;AS_AltDP=102;AS_QD=32.60;BaseQRankSum=2.384;DP=108;ExcessHet=0.0000;FS=3.316;MQ=60.00;MQRankSum=0;QD=32.60;ReadPosRankSum=0.681;SOR=0.477;VarDP=103 GT:AD:DP:GQ:PL:SB 1:0,47:47:99:1581,0:0,0,24,23 1/1:1,55:56:99:1777,158,0:1,0,23,32 +chrX 1415389 . A C 5278 . AC=3;AF=1.00;AN=3;AS_AltDP=122;AS_QD=31.85;DP=126;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.51;SOR=1.160;VarDP=122 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,57:57:99:.:.:2488,0:.:0,0,26,31 1|1:0,65:65:99:0|1:1415389_A_C:2820,196,0:1415389:0,0,23,42 +chrX 1415401 . C T 4991 . AC=3;AF=1.00;AN=3;AS_AltDP=116;AS_QD=31.17;DP=120;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.28;SOR=1.003;VarDP=116 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,56:56:99:.:.:2372,0:.:0,0,25,31 1|1:0,60:60:99:0|1:1415389_A_C:2649,181,0:1415389:0,0,25,35 +chrX 1415427 . T C 4461 . AC=3;AF=1.00;AN=3;AS_AltDP=101;AS_QD=33.17;DP=104;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.47;SOR=0.930;VarDP=101 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,49:49:99:.:.:2193,0:.:0,0,20,29 1|1:0,52:52:99:0|1:1415427_T_C:2298,157,0:1415427:0,0,25,27 +chrX 1415429 . G A 4461 . AC=3;AF=1.00;AN=3;AS_AltDP=101;AS_QD=28.38;DP=103;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.47;SOR=0.930;VarDP=101 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,49:49:99:.:.:2193,0:.:0,0,20,29 1|1:0,52:52:99:0|1:1415427_T_C:2298,157,0:1415427:0,0,25,27 +chrX 1415461 . T C 4080 . AC=3;AF=1.00;AN=3;AS_AltDP=99;AS_QD=26.16;DP=102;ExcessHet=0.0000;FS=0.000;MQ=59.57;QD=41.52;SOR=0.888;VarDP=99 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,51:51:99:.:.:2105,0:.:0,0,26,25 1|1:0,48:48:99:0|1:1415461_T_C:2005,144,0:1415461:0,0,28,20 +chrX 1415471 . C CTTT 4593.97 . AC=3;AF=1.00;AN=3;AS_AltDP=110;AS_QD=24.10;DP=111;ExcessHet=0.0000;FS=0.000;MQ=59.61;QD=42.12;SOR=0.806;VarDP=110 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,52:52:99:.:.:2184,0:.:0,0,25,27 1|1:0,58:58:99:0|1:1415461_T_C:2449,175,0:1415461:0,0,33,25 +chrX 1415492 . T C 3856 . AC=3;AF=1.00;AN=3;AS_AltDP=96;AS_QD=27.45;DP=100;ExcessHet=0.0000;FS=0.000;MQ=59.64;QD=40.48;SOR=1.022;VarDP=96 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,51:51:99:.:.:2047,0:.:0,0,28,23 1|1:0,45:45:99:0|1:1415461_T_C:1839,135,0:1415461:0,0,27,18 +chrX 1415611 . G A 4865 . AC=3;AF=1.00;AN=3;AS_AltDP=114;AS_QD=30.79;DP=114;ExcessHet=0.0000;FS=0.000;MQ=59.14;QD=42.94;SOR=0.728;VarDP=114 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,66:66:99:.:.:2858,0:.:0,0,35,31 1|1:0,48:48:99:0|1:1415611_G_A:2037,144,0:1415611:0,0,23,25 +chrX 1415626 . C T 4862 . AC=3;AF=1.00;AN=3;AS_AltDP=114;AS_QD=31.00;DP=117;ExcessHet=0.0000;FS=0.000;MQ=59.17;QD=42.91;SOR=0.841;VarDP=114 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,71:71:99:.:.:3028,0:.:0,0,39,32 1|1:0,43:43:99:0|1:1415611_G_A:1864,129,0:1415611:0,0,22,21 +chrX 1415698 . A T 4998 . AC=3;AF=1.00;AN=3;AS_AltDP=116;AS_QD=24.57;DP=119;ExcessHet=0.0000;FS=0.000;MQ=59.58;QD=43.34;SOR=0.960;VarDP=116 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,67:67:99:.:.:2938,0:.:0,0,44,23 1|1:0,49:49:99:0|1:1415698_A_T:2090,147,0:1415698:0,0,21,28 +chrX 1415709 . G A 5127 . AC=3;AF=1.00;AN=3;AS_AltDP=120;AS_QD=30.75;DP=125;ExcessHet=0.0000;FS=0.000;MQ=59.82;QD=42.98;SOR=0.991;VarDP=120 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,70:70:99:.:.:3032,0:.:0,0,44,26 1|1:0,50:50:99:0|1:1415698_A_T:2125,150,0:1415698:0,0,24,26 +chrX 1416000 . G C 3819 . AC=3;AF=1.00;AN=3;AS_AltDP=118;AS_QD=32.62;DP=122;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.62;SOR=0.914;VarDP=118 GT:AD:DP:GQ:PL:SB 1:0,61:61:99:2013,0:0,0,28,33 1/1:0,57:57:99:1836,171,0:0,0,25,32 +chrX 1416045 . GCA G 5030.97 . AC=3;AF=1.00;AN=3;AS_AltDP=118;AS_QD=31.21;DP=135;ExcessHet=0.0000;FS=0.000;MQ=59.99;QD=42.97;SOR=1.040;VarDP=118 GT:AD:DP:GQ:PL:SB 1:0,66:66:99:2779,0:0,0,25,41 1/1:0,52:52:99:2291,157,0:0,0,25,27 +chrX 1416332 . C T 3209 . AC=3;AF=1.00;AN=3;AS_AltDP=74;AS_QD=27.05;DP=75;ExcessHet=0.0000;FS=0.000;MQ=59.94;QD=43.77;SOR=0.747;VarDP=74 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,46:46:99:.:.:2010,0:.:0,0,26,20 1|1:0,28:28:84:0|1:1416332_C_T:1229,84,0:1416332:0,0,10,18 +chrX 1416340 . CAG C 3299.97 . AC=3;AF=1.00;AN=3;AS_AltDP=76;AS_QD=29.78;DP=77;ExcessHet=0.0000;FS=0.000;MQ=59.94;QD=43.93;SOR=0.801;VarDP=76 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,44:44:99:.:.:1951,0:.:0,0,24,20 1|1:0,32:32:96:0|1:1416332_C_T:1388,96,0:1416332:0,0,12,20 +chrX 1416385 . GCACA G 3380.97 . AC=3;AF=1.00;AN=3;AS_AltDP=76;AS_QD=32.05;DP=83;ExcessHet=0.0000;FS=0.000;MQ=59.88;QD=45.00;SOR=1.051;VarDP=76 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,43:43:99:.:.:1935,0:.:0,0,19,24 1|1:0,33:33:99:0|1:1416385_GCACA_G:1485,99,0:1416385:0,0,13,20 +chrX 1416416 . AACAG A 3740.97 . AC=3;AF=1.00;AN=3;AS_AltDP=84;AS_QD=31.95;DP=86;ExcessHet=0.0000;FS=0.000;MQ=59.89;QD=45.00;SOR=0.897;VarDP=84 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,45:45:99:.:.:2025,0:.:0,0,19,26 1|1:0,39:39:99:0|1:1416385_GCACA_G:1755,117,0:1416385:0,0,19,20 +chrX 1416458 . G GAC 2700.97 . AC=3;AF=1.00;AN=3;AS_AltDP=75;AS_QD=31.14;BaseQRankSum=-1.064;DP=96;ExcessHet=0.0000;FS=1.166;MQ=59.96;MQRankSum=1.469;QD=31.14;ReadPosRankSum=-0.016;SOR=0.791;VarDP=88 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:13,26:39:99:.:.:545,0:.:6,7,14,12 1|1:0,49:49:99:0|1:1416385_GCACA_G:2195,147,0:1416385:0,0,27,22 +chrX 1416463 . G A 4125 . AC=3;AF=1.00;AN=3;AS_AltDP=93;AS_QD=36.76;DP=97;ExcessHet=0.0000;FS=0.000;MQ=59.96;QD=44.68;SOR=0.804;VarDP=93 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,44:44:99:.:.:1960,0:.:0,0,22,22 1|1:0,49:49:99:0|1:1416385_GCACA_G:2195,148,0:1416385:0,0,27,22 +chrX 1416540 . C T 2935 . AC=3;AF=1.00;AN=3;AS_AltDP=98;AS_QD=29.95;BaseQRankSum=2.097;DP=101;ExcessHet=0.0000;FS=0.000;MQ=59.96;MQRankSum=0;QD=29.95;ReadPosRankSum=0.931;SOR=0.223;VarDP=99 GT:AD:DP:GQ:PL:SB 1:1,53:54:99:1632,0:0,1,26,27 1/1:0,45:45:99:1333,133,0:0,0,23,22 +chrX 1416709 . C T 3489 . AC=3;AF=1.00;AN=3;AS_AltDP=105;AS_QD=33.20;BaseQRankSum=2.806;DP=113;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=33.20;ReadPosRankSum=1.091;SOR=0.231;VarDP=106 GT:AD:DP:GQ:PL:SB 1:1,53:54:99:1732,0:1,0,28,25 1/1:0,52:52:99:1787,156,0:0,0,25,27 +chrX 1416737 . ACAGT A 4361.97 . AC=3;AF=1.00;AN=3;AS_AltDP=98;AS_QD=32.74;DP=113;ExcessHet=0.0000;FS=0.000;MQ=59.86;QD=44.91;SOR=0.820;VarDP=98 GT:AD:DP:GQ:PL:SB 1:0,47:47:99:2116,0:0,0,23,24 1/1:0,51:51:99:2285,154,0:0,0,23,28 +chrX 1416778 . TACAC T 4402.97 . AC=3;AF=1.00;AN=3;AS_AltDP=99;AS_QD=26.66;DP=108;ExcessHet=0.0000;FS=0.000;MQ=59.92;QD=44.87;SOR=0.936;VarDP=99 GT:AD:DP:GQ:PL:SB 1:0,51:51:99:2282,0:0,0,22,29 1/1:0,48:48:99:2160,145,0:0,0,22,26 +chrX 1416824 . T C 3477 . AC=3;AF=1.00;AN=3;AS_AltDP=107;AS_QD=32.78;DP=114;ExcessHet=0.0000;FS=0.000;MQ=59.98;QD=32.78;SOR=1.158;VarDP=107 GT:AD:DP:GQ:PL:SB 1:0,60:60:99:2005,0:0,0,22,38 1/1:0,47:47:99:1502,140,0:0,0,21,26 +chrX 1416854 . G C 3426 . AC=3;AF=1.00;AN=3;AS_AltDP=105;AS_QD=32.91;DP=109;ExcessHet=0.0000;FS=0.000;MQ=59.98;QD=32.91;SOR=1.015;VarDP=105 GT:AD:DP:GQ:PL:SB 1:0,56:56:99:1844,0:0,0,24,32 1/1:0,49:49:99:1612,147,0:0,0,21,28 +chrX 1417034 . G GAC 4667.97 . AC=3;AF=1.00;AN=3;AS_AltDP=106;AS_QD=29.33;DP=112;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.41;SOR=1.036;VarDP=106 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,60:60:99:.:.:2668,0:.:0,0,35,25 1|1:0,46:46:99:0|1:1417034_G_GAC:2039,138,0:1417034:0,0,26,20 +chrX 1417051 . T C 4495 . AC=3;AF=1.00;AN=3;AS_AltDP=104;AS_QD=27.92;DP=106;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.51;SOR=1.043;VarDP=104 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,56:56:99:.:.:2458,0:.:0,0,32,24 1|1:0,48:48:99:0|1:1417034_G_GAC:2067,144,0:1417034:0,0,28,20 +chrX 1417143 . A G 3515 . AC=3;AF=1.00;AN=3;AS_AltDP=116;AS_QD=30.56;DP=124;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.56;SOR=0.728;VarDP=116 GT:AD:DP:GQ:PL:SB 1:0,60:60:99:1764,0:0,0,32,28 1/1:0,56:56:99:1781,167,0:0,0,25,31 +chrX 1417304 . C CAG 5410.97 . AC=3;AF=1.00;AN=3;AS_AltDP=124;AS_QD=31.26;DP=135;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.95;SOR=1.342;VarDP=124 GT:AD:DP:GQ:PL:SB 1:0,70:70:99:3082,0:0,0,26,44 1/1:0,54:54:99:2368,162,0:0,0,20,34 +chrX 1417342 . C T 5219 . AC=3;AF=1.00;AN=3;AS_AltDP=118;AS_QD=28.77;DP=121;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.48;SOR=1.131;VarDP=118 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,62:62:99:.:.:2730,0:.:0,0,24,38 1|1:0,56:56:99:0|1:1417342_C_T:2519,169,0:1417342:0,0,24,32 +chrX 1417343 . G A 5254 . AC=3;AF=1.00;AN=3;AS_AltDP=119;AS_QD=30.57;DP=122;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.40;SOR=1.150;VarDP=119 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,62:62:99:.:.:2730,0:.:0,0,24,38 1|1:0,57:57:99:0|1:1417342_C_T:2554,172,0:1417342:0,0,24,33 +chrX 1417358 . A C 5067 . AC=3;AF=1.00;AN=3;AS_AltDP=117;AS_QD=33.17;DP=121;ExcessHet=0.0000;FS=0.000;MQ=59.93;QD=43.56;SOR=1.112;VarDP=117 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,58:58:99:.:.:2538,0:.:0,0,23,35 1|1:0,59:59:99:0|1:1417342_C_T:2559,178,0:1417342:0,0,25,34 +chrX 1417405 . C T 4837 . AC=3;AF=1.00;AN=3;AS_AltDP=110;AS_QD=32.60;DP=114;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.25;SOR=1.168;VarDP=110 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,60:60:99:.:.:2638,0:.:0,0,24,36 1|1:0,50:50:99:0|1:1417405_C_T:2229,150,0:1417405:0,0,20,30 +chrX 1417411 . C CACAG 4052.97 . AC=3;AF=1.00;AN=3;AS_AltDP=103;AS_QD=34.87;DP=111;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=39.73;SOR=1.125;VarDP=103 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,51:51:99:.:.:1763,0:.:0,0,20,31 1|1:0,52:52:99:0|1:1417405_C_T:2329,157,0:1417405:0,0,22,30 +chrX 1417516 . C CAT 4562.97 . AC=3;AF=1.00;AN=3;AS_AltDP=103;AS_QD=30.43;DP=107;ExcessHet=0.0000;FS=0.000;MQ=59.75;QD=44.68;SOR=0.712;VarDP=103 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,55:55:99:.:.:2453,0:.:0,0,25,30 1|1:0,48:48:99:0|1:1417516_C_CAT:2149,144,0:1417516:0,0,26,22 +chrX 1417523 . G GCA 4427.97 . AC=3;AF=1.00;AN=3;AS_AltDP=100;AS_QD=31.13;DP=102;ExcessHet=0.0000;FS=0.000;MQ=59.74;QD=44.67;SOR=0.733;VarDP=100 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,54:54:99:.:.:2404,0:.:0,0,26,28 1|1:0,46:46:99:0|1:1417516_C_CAT:2063,138,0:1417516:0,0,25,21 +chrX 1417570 . GCACA G 3844.97 . AC=3;AF=1.00;AN=3;AS_AltDP=87;AS_QD=29.70;DP=89;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.64;SOR=0.763;VarDP=87 GT:AD:DP:GQ:PL:SB 1:0,47:47:99:2105,0:0,0,23,24 1/1:0,40:40:99:1779,120,0:0,0,19,21 +chrX 1417721 . GAC G 4654.97 . AC=3;AF=1.00;AN=3;AS_AltDP=107;AS_QD=27.51;DP=120;ExcessHet=0.0000;FS=0.000;MQ=59.90;QD=43.87;SOR=0.714;VarDP=107 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,66:66:99:.:.:2871,0:.:0,0,27,29 1|1:0,41:41:99:0|1:1417721_GAC_G:1823,124,0:1417721:0,0,22,19 +chrX 1417748 . G A 4973 . AC=3;AF=1.00;AN=3;AS_AltDP=113;AS_QD=31.42;DP=114;ExcessHet=0.0000;FS=0.000;MQ=59.90;QD=44.27;SOR=0.836;VarDP=113 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,67:67:99:.:.:2933,0:.:0,0,28,29 1|1:0,46:46:99:0|1:1417721_GAC_G:2070,138,0:1417721:0,0,27,19 +chrX 1417752 . AGACATGCTCCATGT A 4847.97 . AC=3;AF=1.00;AN=3;AS_AltDP=110;AS_QD=29.32;DP=111;ExcessHet=0.0000;FS=0.000;MQ=59.90;QD=44.43;SOR=0.818;VarDP=110 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,62:62:99:.:.:2727,0:.:0,0,26,26 1|1:0,48:48:99:0|1:1417721_GAC_G:2160,144,0:1417721:0,0,27,21 +chrX 1417769 . CAGGTAT C 4792.97 . AC=3;AF=1.00;AN=3;AS_AltDP=109;AS_QD=29.52;DP=112;ExcessHet=0.0000;FS=0.000;MQ=59.90;QD=44.33;SOR=0.842;VarDP=109 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,62:62:99:.:.:2727,0:.:0,0,26,26 1|1:0,47:47:99:0|1:1417721_GAC_G:2105,142,0:1417721:0,0,27,20 +chrX 1417804 . CAGAG C 4980.97 . AC=3;AF=1.00;AN=3;AS_AltDP=112;AS_QD=29.78;DP=119;ExcessHet=0.0000;FS=0.000;MQ=59.55;QD=44.82;SOR=0.804;VarDP=112 GT:AD:DP:GQ:PL:SB 1:0,59:59:99:2635,0:0,0,24,35 1/1:0,53:53:99:2385,160,0:0,0,29,24 +chrX 1418109 . C G 3616 . AC=3;AF=1.00;AN=3;AS_AltDP=118;AS_QD=30.90;DP=122;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.90;SOR=0.997;VarDP=118 GT:AD:DP:GQ:PL:SB 1:0,57:57:99:1840,0:0,0,27,30 1/1:0,61:61:99:1806,181,0:0,0,24,37 +chrX 1418522 . G T 3777 . AC=3;AF=1.00;AN=3;AS_AltDP=116;AS_QD=32.82;DP=117;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.82;SOR=0.693;VarDP=116 GT:AD:DP:GQ:PL:SB 1:0,47:47:99:1614,0:0,0,25,22 1/1:0,69:69:99:2193,206,0:0,0,33,36 +chrX 1418741 . T C 3407 . AC=3;AF=1.00;AN=3;AS_AltDP=107;AS_QD=32.12;DP=111;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.12;SOR=0.750;VarDP=107 GT:AD:DP:GQ:PL:SB 1:0,58:58:99:1868,0:0,0,31,27 1/1:0,49:49:99:1569,146,0:0,0,24,25 +chrX 1418988 . C T 381 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=8.22;BaseQRankSum=0.97;DP=120;ExcessHet=0.0000;FS=1.120;MQ=60.00;MQRankSum=0;QD=8.22;ReadPosRankSum=0.584;SOR=0.527;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:71:39:68:0,39 0/1:33,17:50:99:.:411,0,897:14,19,8,9 +chrX 1419421 . C T 4203 . AC=3;AF=1.00;AN=3;AS_AltDP=132;AS_QD=32.07;DP=138;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.07;SOR=0.854;VarDP=132 GT:AD:DP:GQ:PL:SB 1:0,64:64:99:2016,0:0,0,32,32 1/1:0,68:68:99:2217,204,0:0,0,39,29 +chrX 1420047 . G C 4863 . AC=3;AF=1.00;AN=3;AS_AltDP=109;AS_QD=36.11;DP=111;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.89;SOR=0.787;VarDP=109 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,51:51:99:.:.:2283,0:.:0,0,27,24 1|1:0,58:58:99:0|1:1420047_G_C:2610,175,0:1420047:0,0,30,28 +chrX 1420049 . C CTA 3924.97 . AC=3;AF=1.00;AN=3;AS_AltDP=106;AS_QD=36.86;BaseQRankSum=3.668;DP=114;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=36.04;ReadPosRankSum=1.766;SOR=0.811;VarDP=110 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,52:52:99:.:.:2318,0:.:0,0,28,24 1|1:4,54:58:84:0|1:1420047_G_C:1646,84,0:1420047:2,2,28,26 +chrX 1420165 . A G 3287 . AC=3;AF=1.00;AN=3;AS_AltDP=107;AS_QD=31.00;DP=114;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.00;SOR=1.158;VarDP=107 GT:AD:DP:GQ:PL:SB 1:0,51:51:99:1496,0:0,0,32,19 1/1:0,56:56:99:1821,168,0:0,0,32,24 +chrX 1420810 . T C 1810 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=32.86;DP=116;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.86;SOR=0.922;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:58:99:58:0,159 1/1:0,56:56:99:.:1840,168,0:0,0,31,25 +chrX 1420837 . G A 3993 . AC=3;AF=1.00;AN=3;AS_AltDP=124;AS_QD=32.44;DP=131;ExcessHet=0.0000;FS=0.000;MQ=59.96;QD=32.44;SOR=1.151;VarDP=124 GT:AD:DP:GQ:PL:SB 1:0,61:61:99:1955,0:0,0,37,24 1/1:0,63:63:99:2068,189,0:0,0,37,26 +chrX 1420939 . A G 2962 . AC=3;AF=1.00;AN=3;AS_AltDP=90;AS_QD=33.24;DP=94;ExcessHet=0.0000;FS=0.000;MQ=59.95;QD=33.24;SOR=0.832;VarDP=90 GT:AD:DP:GQ:PL:SB 1:0,44:44:99:1499,0:0,0,23,21 1/1:0,46:46:99:1493,137,0:0,0,25,21 +chrX 1420960 . ATT A 1741.97 . AC=3;AF=1.00;AN=3;AS_AltDP=56;AS_QD=30.19;BaseQRankSum=-0.136;DP=91;ExcessHet=0.0000;FS=6.247;MQ=59.76;MQRankSum=3.944;QD=30.19;ReadPosRankSum=1.495;SOR=0.191;VarDP=59 GT:AD:DP:GQ:PL:SB 1:1,28:29:99:929,0:1,0,15,13 1/1:2,28:30:31:852,31,0:2,0,12,16 +chrX 1421166 . C T 4465 . AC=3;AF=1.00;AN=3;AS_AltDP=136;AS_QD=33.05;DP=142;ExcessHet=0.0000;FS=0.000;MQ=59.91;QD=33.05;SOR=0.849;VarDP=136 GT:AD:DP:GQ:PL:SB 1:0,73:73:99:2402,0:0,0,33,40 1/1:0,63:63:99:2093,189,0:0,0,30,33 +chrX 1421227 . A G 4561 . AC=3;AF=1.00;AN=3;AS_AltDP=132;AS_QD=34.78;DP=138;ExcessHet=0.0000;FS=0.000;MQ=59.80;QD=34.78;SOR=0.693;VarDP=132 GT:AD:DP:GQ:PL:SB 1:0,64:64:99:2378,0:0,0,35,29 1/1:0,68:68:99:2213,204,0:0,0,31,37 +chrX 1422183 . A G 3989 . AC=3;AF=1.00;AN=3;AS_AltDP=125;AS_QD=32.15;DP=133;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.15;SOR=0.810;VarDP=125 GT:AD:DP:GQ:PL:SB 1:0,61:61:99:1980,0:0,0,30,31 1/1:0,64:64:99:2039,192,0:0,0,29,35 +chrX 1422206 . T C 6018 . AC=3;AF=1.00;AN=3;AS_AltDP=135;AS_QD=31.21;DP=137;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.80;SOR=0.738;VarDP=135 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,59:59:99:.:.:2655,0:.:0,0,30,29 1|1:0,76:76:99:0|1:1422206_T_C:3393,229,0:1422206:0,0,36,40 +chrX 1422207 . G A 6018 . AC=3;AF=1.00;AN=3;AS_AltDP=135;AS_QD=30.21;DP=136;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.80;SOR=0.738;VarDP=135 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,59:59:99:.:.:2655,0:.:0,0,30,29 1|1:0,76:76:99:0|1:1422206_T_C:3393,229,0:1422206:0,0,36,40 +chrX 1422234 . C T 5590 . AC=3;AF=1.00;AN=3;AS_AltDP=127;AS_QD=31.22;DP=128;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.25;SOR=0.954;VarDP=127 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,58:58:99:.:.:2578,0:.:0,0,33,25 1|1:0,69:69:99:0|1:1422234_C_T:3042,208,0:1422234:0,0,38,31 +chrX 1422235 . A G 5590 . AC=3;AF=1.00;AN=3;AS_AltDP=127;AS_QD=26.64;DP=130;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.25;SOR=0.954;VarDP=127 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,58:58:99:.:.:2578,0:.:0,0,33,25 1|1:0,69:69:99:0|1:1422234_C_T:3042,208,0:1422234:0,0,38,31 +chrX 1422272 . A G 5739 . AC=3;AF=1.00;AN=3;AS_AltDP=130;AS_QD=27.36;DP=130;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.38;SOR=1.127;VarDP=130 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,70:70:99:.:.:3128,0:.:0,0,41,29 1|1:0,60:60:99:0|1:1422272_A_G:2641,181,0:1422272:0,0,36,24 +chrX 1422273 . T C 5739 . AC=3;AF=1.00;AN=3;AS_AltDP=130;AS_QD=31.30;DP=130;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.38;SOR=1.127;VarDP=130 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,70:70:99:.:.:3128,0:.:0,0,41,29 1|1:0,60:60:99:0|1:1422272_A_G:2641,181,0:1422272:0,0,36,24 +chrX 1422382 . C G 4316 . AC=3;AF=1.00;AN=3;AS_AltDP=136;AS_QD=31.96;DP=140;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.96;SOR=0.990;VarDP=136 GT:AD:DP:GQ:PL:SB 1:0,81:81:99:2560,0:0,0,41,40 1/1:0,55:55:99:1786,165,0:0,0,18,37 +chrX 1422417 . T C 5510 . AC=3;AF=1.00;AN=3;AS_AltDP=125;AS_QD=28.79;DP=126;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.32;SOR=1.170;VarDP=125 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,69:69:99:.:.:3062,0:.:0,0,35,34 1|1:0,56:56:99:0|1:1422417_T_C:2478,169,0:1422417:0,0,15,41 +chrX 1422420 . A G 5649 . AC=3;AF=1.00;AN=3;AS_AltDP=129;AS_QD=33.68;DP=130;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.02;SOR=1.110;VarDP=129 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,69:69:99:.:.:3062,0:.:0,0,35,34 1|1:0,60:60:99:0|1:1422417_T_C:2617,181,0:1422417:0,0,18,42 +chrX 1422435 . C T 5689 . AC=3;AF=1.00;AN=3;AS_AltDP=128;AS_QD=28.36;DP=129;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.68;SOR=1.092;VarDP=128 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,74:74:99:.:.:3299,0:.:0,0,36,38 1|1:0,54:54:99:0|1:1422435_C_T:2420,163,0:1422435:0,0,17,37 +chrX 1422437 . C T 5758 . AC=3;AF=1.00;AN=3;AS_AltDP=130;AS_QD=27.80;DP=130;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.52;SOR=1.085;VarDP=130 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,75:75:99:.:.:3334,0:.:0,0,37,38 1|1:0,55:55:99:0|1:1422435_C_T:2454,166,0:1422435:0,0,17,38 +chrX 1422447 . C A 5358 . AC=3;AF=1.00;AN=3;AS_AltDP=122;AS_QD=27.00;DP=124;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.16;SOR=1.115;VarDP=122 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,69:69:99:.:.:3054,0:.:0,0,33,36 1|1:0,53:53:99:0|1:1422435_C_T:2334,160,0:1422435:0,0,17,36 +chrX 1422512 . T C 4075 . AC=3;AF=1.00;AN=3;AS_AltDP=125;AS_QD=32.84;DP=129;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.84;SOR=0.742;VarDP=125 GT:AD:DP:GQ:PL:SB 1:0,75:75:99:2460,0:0,0,39,36 1/1:0,50:50:99:1645,149,0:0,0,22,28 +chrX 1422550 . C T 3629 . AC=3;AF=1.00;AN=3;AS_AltDP=115;AS_QD=31.82;DP=122;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.82;SOR=0.782;VarDP=115 GT:AD:DP:GQ:PL:SB 1:0,75:75:99:2335,0:0,0,40,35 1/1:0,40:40:99:1324,120,0:0,0,20,20 +chrX 1422631 . C T 3923 . AC=3;AF=1.00;AN=3;AS_AltDP=119;AS_QD=33.22;DP=122;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.22;SOR=1.247;VarDP=119 GT:AD:DP:GQ:PL:SB 1:0,77:77:99:2516,0:0,0,26,51 1/1:0,42:42:99:1437,126,0:0,0,20,22 +chrX 1422663 . C T 3785 . AC=3;AF=1.00;AN=3;AS_AltDP=116;AS_QD=32.89;DP=116;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.89;SOR=1.003;VarDP=116 GT:AD:DP:GQ:PL:SB 1:0,72:72:99:2305,0:0,0,24,48 1/1:0,44:44:99:1510,132,0:0,0,26,18 +chrX 1423209 . C T 4019 . AC=3;AF=1.00;AN=3;AS_AltDP=122;AS_QD=33.19;DP=125;ExcessHet=0.0000;FS=0.000;MQ=59.91;QD=33.19;SOR=0.986;VarDP=122 GT:AD:DP:GQ:PL:SB 1:0,61:61:99:2052,0:0,0,27,34 1/1:0,61:61:99:1997,183,0:0,0,26,35 +chrX 1423259 . C T 3528 . AC=3;AF=1.00;AN=3;AS_AltDP=108;AS_QD=32.94;DP=111;ExcessHet=0.0000;FS=0.000;MQ=59.94;QD=32.94;SOR=0.892;VarDP=108 GT:AD:DP:GQ:PL:SB 1:0,54:54:99:1777,0:0,0,23,31 1/1:0,54:54:99:1781,162,0:0,0,26,28 +chrX 1423484 . A G 3509 . AC=3;AF=1.00;AN=3;AS_AltDP=107;AS_QD=33.07;DP=110;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.07;SOR=0.789;VarDP=107 GT:AD:DP:GQ:PL:SB 1:0,52:52:99:1712,0:0,0,24,28 1/1:0,55:55:99:1827,165,0:0,0,27,28 +chrX 1423555 . C T 3220 . AC=3;AF=1.00;AN=3;AS_AltDP=101;AS_QD=31.55;BaseQRankSum=2.438;DP=106;ExcessHet=0.0000;FS=2.983;MQ=60.00;MQRankSum=0;QD=31.55;ReadPosRankSum=1.366;SOR=0.158;VarDP=103 GT:AD:DP:GQ:PL:SB 1:1,51:52:99:1657,0:1,0,28,23 1/1:1,50:51:99:1593,143,0:1,0,28,22 +chrX 1423595 . G A 3106 . AC=3;AF=1.00;AN=3;AS_AltDP=102;AS_QD=30.75;DP=104;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.75;SOR=0.732;VarDP=102 GT:AD:DP:GQ:PL:SB 1:0,56:56:99:1663,0:0,0,28,28 1/1:0,46:46:99:1473,137,0:0,0,24,22 +chrX 1423743 . TCCATCCATCCTC T 2894.97 . AC=3;AF=1.00;AN=3;AS_AltDP=66;AS_QD=26.74;DP=82;ExcessHet=0.0000;FS=0.000;MQ=59.16;QD=44.45;SOR=0.754;VarDP=66 GT:AD:DP:GQ:PL:SB 1:0,34:34:99:1502,0:0,0,19,15 1/1:0,32:32:97:1432,97,0:0,0,13,19 +chrX 1423775 . CCCAT C 2466.97 . AC=3;AF=1.00;AN=3;AS_AltDP=68;AS_QD=34.60;BaseQRankSum=1.793;DP=86;ExcessHet=0.0000;FS=0.000;MQ=58.23;MQRankSum=6.085;QD=35.30;ReadPosRankSum=-0.32;SOR=0.533;VarDP=71 GT:AD:DP:GQ:PL:SB 1:1,35:36:99:1485,0:0,1,16,19 1/1:2,33:35:55:1021,55,0:1,1,14,19 +chrX 1424325 . C T 1817 . AC=3;AF=1.00;AN=3;AS_AltDP=57;AS_QD=32.40;DP=65;ExcessHet=0.0000;FS=0.000;MQ=59.41;QD=32.40;SOR=0.728;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,36:36:99:1164,0:0,0,16,20 1/1:0,21:21:63:683,63,0:0,0,12,9 +chrX 1424365 . C CATCCACCCTCCCATCCATCT 2330.97 . AC=3;AF=1.00;AN=3;AS_AltDP=54;AS_QD=26.67;DP=70;ExcessHet=0.0000;FS=0.000;MQ=55.91;QD=43.89;SOR=2.303;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,29:29:99:.:.:1246,0:.:0,0,20,9 1|1:0,25:25:75:0|1:1424365_C_CATCCACCCTCCCATCCATCT:1124,75,0:1424365:0,0,21,4 +chrX 1424386 . G C 2606 . AC=3;AF=1.00;AN=3;AS_AltDP=60;AS_QD=35.86;DP=70;ExcessHet=0.0000;FS=0.000;MQ=54.48;QD=43.93;SOR=2.226;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,31:31:99:.:.:1353,0:.:0,0,21,10 1|1:0,29:29:87:0|1:1424365_C_CATCCACCCTCCCATCCATCT:1283,87,0:1424365:0,0,24,5 +chrX 1424402 . G A 2552 . AC=3;AF=1.00;AN=3;AS_AltDP=60;AS_QD=30.49;DP=71;ExcessHet=0.0000;FS=0.000;MQ=54.18;QD=43.03;SOR=2.226;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,32:32:99:.:.:1355,0:.:0,0,22,10 1|1:0,28:28:84:0|1:1424365_C_CATCCACCCTCCCATCCATCT:1227,84,0:1424365:0,0,23,5 +chrX 1424438 . G A 2464 . AC=3;AF=1.00;AN=3;AS_AltDP=76;AS_QD=32.82;DP=83;ExcessHet=0.0000;FS=0.000;MQ=55.71;QD=32.82;SOR=2.124;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,38:38:99:1251,0:0,0,24,14 1/1:0,38:38:99:1243,114,0:0,0,32,6 +chrX 1424471 . C T 2711 . AC=3;AF=1.00;AN=3;AS_AltDP=89;AS_QD=30.80;DP=98;ExcessHet=0.0000;FS=0.000;MQ=57.60;QD=30.80;SOR=1.636;VarDP=89 GT:AD:DP:GQ:PL:SB 1:0,43:43:99:1361,0:0,0,28,15 1/1:0,46:46:99:1380,137,0:0,0,32,14 +chrX 1424536 . C T 4429 . AC=3;AF=1.00;AN=3;AS_AltDP=105;AS_QD=30.91;DP=107;ExcessHet=0.0000;FS=0.000;MQ=59.84;QD=42.47;SOR=0.772;VarDP=105 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,46:46:99:.:.:1911,0:.:0,0,25,20 1|1:0,59:59:99:0|1:1424536_C_T:2548,177,0:1424536:0,0,29,30 +chrX 1424557 . CATCT C 4076.97 . AC=3;AF=1.00;AN=3;AS_AltDP=96;AS_QD=31.98;DP=107;ExcessHet=0.0000;FS=0.000;MQ=59.84;QD=42.88;SOR=0.693;VarDP=96 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,36:36:99:.:.:1543,0:.:0,0,19,17 1|1:0,60:60:99:0|1:1424536_C_T:2573,180,0:1424536:0,0,29,31 +chrX 1424678 . A G 174 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=6.00;BaseQRankSum=0.247;DP=94;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=6.00;ReadPosRankSum=0.648;SOR=0.627;VarDP=34 GT:AD:DP:GQ:MIN_DP:PL:SB 1:14,20:34:99:.:204,0:6,8,9,11 0/0:.:56:94:56:0,94,1145 +chrX 1424853 . T TCCAC,C 1057 . AC=3,0;AF=1.00,0.00;AN=3;AS_AltDP=26,0;AS_QD=29.08,32.49;DP=47;ExcessHet=0.0000;FS=0.000;MQ=58.54;QD=41.81;SOR=4.255;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,13,0:13:99:574,0,575:0,0,0,13 1/1:0,13,0:13:39:513,39,0,456,57,621:0,0,2,11 +chrX 1424939 . A C 2896 . AC=3;AF=1.00;AN=3;AS_AltDP=66;AS_QD=30.78;DP=75;ExcessHet=0.0000;FS=0.000;MQ=56.54;QD=44.33;SOR=0.957;VarDP=66 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,29:29:99:.:.:1261,0:.:0,0,11,18 1|1:0,37:37:99:0|1:1424939_A_C:1665,111,0:1424939:0,0,18,19 +chrX 1424964 . A G 3036 . AC=3;AF=1.00;AN=3;AS_AltDP=72;AS_QD=28.69;BaseQRankSum=0.278;DP=85;ExcessHet=0.0000;FS=5.806;MQ=56.86;MQRankSum=0.167;QD=38.33;ReadPosRankSum=2.666;SOR=0.313;VarDP=80 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,31:31:99:.:.:1376,0:.:0,0,13,15 1|1:8,41:49:29:0|1:1424939_A_C:1690,29,0:1424939:6,2,20,21 +chrX 1424967 . CA C 2559.97 . AC=3;AF=1.00;AN=3;AS_AltDP=69;AS_QD=32.90;BaseQRankSum=0.868;DP=85;ExcessHet=0.0000;FS=5.073;MQ=56.86;MQRankSum=0.427;QD=32.90;ReadPosRankSum=2.382;SOR=0.361;VarDP=79 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:2,28:30:99:.:.:909,0:.:1,1,13,15 1|1:8,41:49:29:0|1:1424939_A_C:1690,29,0:1424939:6,2,20,21 +chrX 1424969 . TCCC T 2553.97 . AC=3;AF=1.00;AN=3;AS_AltDP=69;AS_QD=32.01;BaseQRankSum=0.696;DP=88;ExcessHet=0.0000;FS=9.254;MQ=56.97;MQRankSum=0.427;QD=32.01;ReadPosRankSum=2.192;SOR=0.296;VarDP=81 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:2,28:30:99:.:.:909,0:.:1,1,13,15 1|1:10,41:51:25:0|1:1424939_A_C:1684,25,0:1424939:8,2,20,21 +chrX 1424981 . TCCATCTATCCACCTACCATCCATCCATCCATCCATCCATCCTTCCTC T 3213.97 . AC=3;AF=1.00;AN=3;AS_AltDP=74;AS_QD=28.04;DP=95;ExcessHet=0.0000;FS=0.000;MQ=57.20;QD=43.96;SOR=0.992;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:1312,0:0,0,17,13 1/1:0,44:44:99:1941,135,0:0,0,25,19 +chrX 1425068 . C G 3064 . AC=3;AF=1.00;AN=3;AS_AltDP=99;AS_QD=31.25;DP=107;ExcessHet=0.0000;FS=0.000;MQ=57.60;QD=31.25;SOR=0.713;VarDP=99 GT:AD:DP:GQ:PL:SB 1:0,42:42:99:1309,0:0,0,22,20 1/1:0,57:57:99:1785,170,0:0,0,28,29 +chrX 1425142 . A G 3253 . AC=3;AF=1.00;AN=3;AS_AltDP=103;AS_QD=31.87;DP=113;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.87;SOR=0.712;VarDP=103 GT:AD:DP:GQ:PL:SB 1:0,54:54:99:1711,0:0,0,26,28 1/1:0,49:49:99:1572,146,0:0,0,26,23 +chrX 1425191 . G A 3928 . AC=3;AF=1.00;AN=3;AS_AltDP=124;AS_QD=31.92;DP=134;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.92;SOR=0.793;VarDP=124 GT:AD:DP:GQ:PL:SB 1:0,60:60:99:1869,0:0,0,32,28 1/1:0,64:64:99:2089,192,0:0,0,33,31 +chrX 1425379 . A C 4135 . AC=3;AF=1.00;AN=3;AS_AltDP=126;AS_QD=33.06;DP=133;ExcessHet=0.0000;FS=0.000;MQ=59.88;QD=33.06;SOR=0.976;VarDP=126 GT:AD:DP:GQ:PL:SB 1:0,68:68:99:2236,0:0,0,39,29 1/1:0,58:58:99:1929,174,0:0,0,32,26 +chrX 1425429 . G C 4402 . AC=3;AF=1.00;AN=3;AS_AltDP=135;AS_QD=32.83;DP=143;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.83;SOR=1.129;VarDP=135 GT:AD:DP:GQ:PL:SB 1:0,66:66:99:2191,0:0,0,40,26 1/1:0,69:69:99:2241,206,0:0,0,40,29 +chrX 1425440 . C T 4266 . AC=3;AF=1.00;AN=3;AS_AltDP=130;AS_QD=33.05;DP=138;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.05;SOR=1.127;VarDP=130 GT:AD:DP:GQ:PL:SB 1:0,65:65:99:2149,0:0,0,39,26 1/1:0,65:65:99:2147,195,0:0,0,38,27 +chrX 1425778 . G A 4452 . AC=3;AF=1.00;AN=3;AS_AltDP=134;AS_QD=33.20;BaseQRankSum=2.505;DP=136;ExcessHet=0.0000;FS=4.582;MQ=60.00;MQRankSum=0;QD=33.20;ReadPosRankSum=0.178;SOR=1.344;VarDP=135 GT:AD:DP:GQ:PL:SB 1:1,77:78:99:2552,0:1,0,27,50 1/1:0,57:57:99:1930,171,0:0,0,19,38 +chrX 1425853 . T C 3643 . AC=3;AF=1.00;AN=3;AS_AltDP=112;AS_QD=31.94;BaseQRankSum=3.458;DP=118;ExcessHet=0.0000;FS=2.409;MQ=60.00;MQRankSum=0;QD=31.94;ReadPosRankSum=-1.22;SOR=0.848;VarDP=115 GT:AD:DP:GQ:PL:SB 1:3,62:65:99:1975,0:2,1,28,34 1/1:0,50:50:99:1698,150,0:0,0,19,31 +chrX 1425946 . A G 4105 . AC=3;AF=1.00;AN=3;AS_AltDP=126;AS_QD=32.56;BaseQRankSum=-0.312;DP=131;ExcessHet=0.0000;FS=3.185;MQ=60.00;MQRankSum=0;QD=32.56;ReadPosRankSum=0.903;SOR=0.376;VarDP=127 GT:AD:DP:GQ:PL:SB 1:1,70:71:99:2300,0:0,1,36,34 1/1:0,56:56:99:1835,168,0:0,0,30,26 +chrX 1425991 . C T 4396 . AC=3;AF=1.00;AN=3;AS_AltDP=135;AS_QD=32.79;DP=140;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.79;SOR=0.867;VarDP=135 GT:AD:DP:GQ:PL:SB 1:0,66:66:99:2204,0:0,0,33,33 1/1:0,69:69:99:2222,207,0:0,0,40,29 +chrX 1426159 . A G 3759 . AC=3;AF=1.00;AN=3;AS_AltDP=124;AS_QD=30.31;BaseQRankSum=-0.619;DP=130;ExcessHet=0.0000;FS=3.188;MQ=59.91;MQRankSum=0;QD=30.31;ReadPosRankSum=-0.33;SOR=0.378;VarDP=125 GT:AD:DP:GQ:PL:SB 1:1,62:63:99:1900,0:0,1,30,32 1/1:0,62:62:99:1889,185,0:0,0,35,27 +chrX 1426220 . T C 4058 . AC=3;AF=1.00;AN=3;AS_AltDP=132;AS_QD=30.74;BaseQRankSum=-0.594;DP=138;ExcessHet=0.0000;FS=0.000;MQ=59.84;MQRankSum=-0.088;QD=30.74;ReadPosRankSum=0.052;SOR=0.534;VarDP=133 GT:AD:DP:GQ:PL:SB 1:1,66:67:99:2094,0:0,1,23,43 1/1:0,66:66:99:1994,197,0:0,0,26,40 +chrX 1426271 . A G 4467 . AC=3;AF=1.00;AN=3;AS_AltDP=137;AS_QD=32.82;DP=139;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.82;SOR=1.082;VarDP=137 GT:AD:DP:GQ:PL:SB 1:0,65:65:99:2197,0:0,0,28,37 1/1:0,72:72:99:2300,216,0:0,0,29,43 +chrX 1426316 . C T 923 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=12.54;BaseQRankSum=2.149;DP=138;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=12.54;ReadPosRankSum=-0.521;SOR=0.749;VarDP=76 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:58:99:58:0,1800 0/1:41,35:76:99:.:953,0,1603:17,24,14,21 +chrX 1426322 . C T 2806 . AC=2;AF=0.667;AN=3;AS_AltDP=94;AS_QD=21.65;BaseQRankSum=0;DP=138;ExcessHet=0.0000;FS=1.553;MQ=60.00;MQRankSum=0;QD=21.65;ReadPosRankSum=1.059;SOR=0.534;VarDP=131 GT:AD:DP:GQ:PL:SB 1:1,53:54:99:1797,0:1,0,28,25 0/1:36,41:77:99:1039,0,1379:15,21,17,24 +chrX 1426398 . A G 2522 . AC=2;AF=0.667;AN=3;AS_AltDP=90;AS_QD=21.09;BaseQRankSum=-0.504;DP=125;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=21.09;ReadPosRankSum=0.816;SOR=0.659;VarDP=121 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,55:56:99:.:.:1701,0:.:1,0,36,19 0|1:30,35:65:99:0|1:1426398_A_G:851,0,1134:1426398:18,12,18,17 +chrX 1426406 . G A 834 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=13.09;BaseQRankSum=0.28;DP=134;ExcessHet=0.0000;FS=6.522;MQ=60.00;MQRankSum=0;QD=13.09;ReadPosRankSum=-1.538;SOR=1.473;VarDP=66 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:64:99:64:.:.:0,1742 0|1:34,32:66:99:.:1|0:1426398_A_G:864,0,1290:1426398:17,17,21,11 +chrX 1426722 . G A 2627 . AC=2;AF=0.667;AN=3;AS_AltDP=86;AS_QD=25.30;BaseQRankSum=2.418;DP=113;ExcessHet=0.0000;FS=0.943;MQ=59.96;MQRankSum=0;QD=25.30;ReadPosRankSum=1.329;SOR=0.835;VarDP=105 GT:AD:DP:GQ:PL:SB 1:1,59:60:99:1904,0:0,1,25,34 0/1:18,27:45:99:753,0,653:9,9,13,14 +chrX 1426735 . C T 398 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=9.30;BaseQRankSum=1.68;DP=109;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=9.30;ReadPosRankSum=0.547;SOR=0.748;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,1786 0/1:29,17:46:99:.:428,0,1135:15,14,8,9 +chrX 1426794 . T C 2566 . AC=2;AF=0.667;AN=3;AS_AltDP=82;AS_QD=25.20;BaseQRankSum=2.854;DP=108;ExcessHet=0.0000;FS=0.000;MQ=59.96;MQRankSum=0;QD=25.20;ReadPosRankSum=0.839;SOR=0.655;VarDP=103 GT:AD:DP:GQ:PL:SB 1:0,57:57:99:1865,0:0,0,27,30 0/1:21,25:46:99:731,0,532:10,11,13,12 +chrX 1426891 . G T 3219 . AC=2;AF=0.667;AN=3;AS_AltDP=76;AS_QD=31.24;BaseQRankSum=1.906;DP=105;ExcessHet=0.0000;FS=0.000;MQ=59.56;MQRankSum=-0.162;QD=31.24;ReadPosRankSum=1.633;SOR=0.714;VarDP=104 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,53:54:99:.:.:2365,0:.:1,0,26,27 0|1:27,23:50:99:0|1:1426891_G_T:884,0,1064:1426891:12,15,9,14 +chrX 1426896 . T C 3239 . AC=2;AF=0.667;AN=3;AS_AltDP=76;AS_QD=31.74;BaseQRankSum=-0.663;DP=103;ExcessHet=0.0000;FS=0.000;MQ=59.55;MQRankSum=-1.043;QD=31.74;ReadPosRankSum=-0.477;SOR=0.641;VarDP=103 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,53:53:99:.:.:2385,0:.:0,0,26,27 0|1:27,23:50:99:0|1:1426891_G_T:884,0,1064:1426891:12,15,9,14 +chrX 1426915 . A G 3291 . AC=2;AF=0.667;AN=3;AS_AltDP=77;AS_QD=31.33;BaseQRankSum=-1.749;DP=106;ExcessHet=0.0000;FS=0.000;MQ=59.51;MQRankSum=-1.193;QD=31.33;ReadPosRankSum=0.792;SOR=0.728;VarDP=106 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,58:58:99:.:.:2610,0:.:0,0,28,30 0|1:29,19:48:99:0|1:1426891_G_T:711,0,1161:1426891:13,16,6,13 +chrX 1426938 . A G 3473 . AC=2;AF=0.667;AN=3;AS_AltDP=81;AS_QD=33.68;BaseQRankSum=-0.975;DP=104;ExcessHet=0.0000;FS=1.935;MQ=59.51;MQRankSum=-1.001;QD=33.68;ReadPosRankSum=-0.219;SOR=0.813;VarDP=104 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,60:60:99:.:.:2690,0:.:0,0,30,30 0|1:23,21:44:99:0|1:1426891_G_T:813,0,903:1426891:12,11,7,14 +chrX 1426939 . T C 3473 . AC=2;AF=0.667;AN=3;AS_AltDP=81;AS_QD=33.68;BaseQRankSum=0.447;DP=105;ExcessHet=0.0000;FS=1.935;MQ=59.51;MQRankSum=-1.001;QD=33.68;ReadPosRankSum=-0.219;SOR=0.813;VarDP=104 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,60:60:99:.:.:2690,0:.:0,0,30,30 0|1:23,21:44:99:0|1:1426891_G_T:813,0,903:1426891:12,11,7,14 +chrX 1427002 . A AAAAC 2663.97 . AC=2;AF=0.667;AN=3;AS_AltDP=65;AS_QD=30.72;BaseQRankSum=0.573;DP=121;ExcessHet=0.0000;FS=0.000;MQ=59.79;MQRankSum=-1.272;QD=30.72;ReadPosRankSum=2.044;SOR=0.662;VarDP=88 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,52:52:99:.:.:2255,0:.:0,0,30,22 0|1:23,13:36:99:0|1:1427002_A_AAAAC:448,0,886:1427002:13,10,6,7 +chrX 1427009 . G A 3601 . AC=2;AF=0.667;AN=3;AS_AltDP=88;AS_QD=32.42;BaseQRankSum=-1.207;DP=119;ExcessHet=0.0000;FS=2.014;MQ=59.79;MQRankSum=-1.272;QD=32.42;ReadPosRankSum=1.714;SOR=0.864;VarDP=112 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,65:65:99:.:.:2797,0:.:0,0,30,22 0|1:24,23:47:99:0|1:1427002_A_AAAAC:834,0,881:1427002:11,12,6,7 +chrX 1427037 . C T 3206 . AC=2;AF=0.667;AN=3;AS_AltDP=106;AS_QD=23.28;BaseQRankSum=-0.762;DP=145;ExcessHet=0.0000;FS=0.000;MQ=59.84;MQRankSum=-1.092;QD=23.28;ReadPosRankSum=0.901;SOR=0.663;VarDP=139 GT:AD:DP:GQ:PL:SB 1:0,80:80:99:2595,0:0,0,51,29 0/1:33,26:59:99:641,0,895:20,13,12,14 +chrX 1427158 . T G 3020 . AC=2;AF=0.667;AN=3;AS_AltDP=100;AS_QD=22.76;BaseQRankSum=2.117;DP=139;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=22.76;ReadPosRankSum=0.533;SOR=0.635;VarDP=134 GT:AD:DP:GQ:PL:SB 1:1,78:79:99:2526,0:1,0,44,34 0/1:33,22:55:99:524,0,896:19,14,13,9 +chrX 1427224 . C G 2281 . AC=2;AF=0.667;AN=3;AS_AltDP=74;AS_QD=23.58;BaseQRankSum=1.147;DP=102;ExcessHet=0.0000;FS=1.962;MQ=59.73;MQRankSum=0.818;QD=23.58;ReadPosRankSum=-1.302;SOR=1.061;VarDP=98 GT:AD:DP:GQ:PL:SB 1:0,60:60:99:1949,0:0,0,24,36 0/1:24,14:38:99:362,0,654:12,12,7,7 +chrX 1427305 . C T 2614 . AC=2;AF=0.667;AN=3;AS_AltDP=82;AS_QD=24.04;BaseQRankSum=1.89;DP=114;ExcessHet=0.0000;FS=5.765;MQ=60.00;MQRankSum=0;QD=24.04;ReadPosRankSum=1.676;SOR=1.323;VarDP=110 GT:AD:DP:GQ:PL:SB 1:0,59:59:99:1998,0:0,0,18,41 0/1:28,23:51:99:646,0,778:13,15,10,13 +chrX 1427402 . A G 3008 . AC=2;AF=0.667;AN=3;AS_AltDP=99;AS_QD=22.01;BaseQRankSum=-2.184;DP=140;ExcessHet=0.0000;FS=1.516;MQ=60.00;MQRankSum=0;QD=22.01;ReadPosRankSum=0.344;SOR=0.541;VarDP=138 GT:AD:DP:GQ:PL:SB 1:0,74:74:99:2456,0:0,0,41,33 0/1:39,25:64:99:582,0,1121:23,16,13,12 +chrX 1427477 . A G 3059 . AC=2;AF=0.667;AN=3;AS_AltDP=105;AS_QD=22.71;BaseQRankSum=-1.526;DP=137;ExcessHet=0.0000;FS=0.773;MQ=59.88;MQRankSum=1.001;QD=22.71;ReadPosRankSum=0.215;SOR=0.589;VarDP=136 GT:AD:DP:GQ:PL:SB 1:0,76:76:99:2386,0:0,0,49,27 0/1:31,29:60:99:703,0,878:19,12,12,17 +chrX 1427524 . C G 3145 . AC=2;AF=0.667;AN=3;AS_AltDP=106;AS_QD=23.01;BaseQRankSum=2.511;DP=141;ExcessHet=0.0000;FS=11.528;MQ=59.62;MQRankSum=1.693;QD=23.01;ReadPosRankSum=0.411;SOR=0.726;VarDP=138 GT:AD:DP:GQ:PL:SB 1:2,79:81:99:2448,0:1,1,48,31 0/1:30,27:57:99:727,0,752:11,19,12,15 +chrX 1427708 . T C 907 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=12.49;BaseQRankSum=1.062;DP=152;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=12.49;ReadPosRankSum=-0.589;SOR=0.769;VarDP=75 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:76:99:76:0,1800 0/1:39,36:75:99:.:937,0,1006:22,17,21,15 +chrX 1427899 . G A 2877 . AC=2;AF=0.667;AN=3;AS_AltDP=98;AS_QD=22.36;BaseQRankSum=1.126;DP=139;ExcessHet=0.0000;FS=2.649;MQ=59.82;MQRankSum=0;QD=22.36;ReadPosRankSum=-0.563;SOR=0.774;VarDP=130 GT:AD:DP:GQ:PL:SB 1:0,70:70:99:2198,0:0,0,32,38 0/1:32,28:60:99:709,0,768:17,15,13,15 +chrX 1427983 . A G 2939 . AC=2;AF=0.667;AN=3;AS_AltDP=96;AS_QD=23.20;BaseQRankSum=-0.801;DP=133;ExcessHet=0.0000;FS=3.824;MQ=60.00;MQRankSum=0;QD=23.20;ReadPosRankSum=0.099;SOR=0.399;VarDP=128 GT:AD:DP:GQ:PL:SB 1:0,66:66:99:2199,0:0,0,33,33 0/1:32,30:62:99:770,0,876:12,20,12,18 +chrX 1428177 . G C 3906 . AC=2;AF=0.667;AN=3;AS_AltDP=98;AS_QD=30.28;BaseQRankSum=-0.77;DP=133;ExcessHet=0.0000;FS=0.769;MQ=59.96;MQRankSum=0;QD=30.28;ReadPosRankSum=1.625;SOR=0.871;VarDP=130 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,61:61:99:.:.:2645,0:.:0,0,24,37 0|1:32,37:69:99:0|1:1428177_G_C:1291,0,1129:1428177:15,17,18,19 +chrX 1428198 . C A 3930 . AC=2;AF=0.667;AN=3;AS_AltDP=98;AS_QD=31.43;BaseQRankSum=0.587;DP=128;ExcessHet=0.0000;FS=0.000;MQ=59.96;MQRankSum=0;QD=31.43;ReadPosRankSum=0.541;SOR=0.707;VarDP=126 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,65:65:99:.:.:2784,0:.:0,0,26,39 0|1:28,33:61:99:0|1:1428177_G_C:1176,0,1024:1428177:12,16,16,17 +chrX 1428309 . G A 216 . AC=1;AF=0.333;AN=3;AS_AltDP=10;AS_QD=7.94;BaseQRankSum=2.074;DP=91;ExcessHet=0.0000;FS=16.320;MQ=60.00;MQRankSum=0;QD=7.94;ReadPosRankSum=0.486;SOR=2.228;VarDP=31 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:58:99:58:0,109 0/1:21,10:31:99:.:246,0,492:7,14,8,2 +chrX 1428322 . CAAA CAA,C 1760.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=45,20;AS_QD=26.78,34.90;BaseQRankSum=-0.391;DP=93;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=27.27;ReadPosRankSum=0.894;SOR=0.534;VarDP=66 GT:AD:DP:GQ:PL:SB 1:1,32,0:33:99:755,0,779:1,0,23,9 1/2:0,13,20:33:99:1045,645,568,312,0,498:0,0,18,15 +chrX 1428596 . G A 4325 . AC=3;AF=1.00;AN=3;AS_AltDP=133;AS_QD=32.50;BaseQRankSum=-0.396;DP=138;ExcessHet=0.0000;FS=0.000;MQ=57.59;MQRankSum=-0.257;QD=32.50;ReadPosRankSum=1.231;SOR=0.518;VarDP=134 GT:AD:DP:GQ:PL:SB 1:0,65:65:99:2145,0:0,0,21,44 1/1:1,68:69:99:2210,173,0:0,1,29,39 +chrX 1428646 . C CAAATAAATAAATAAATAAAT,CAAATAAATAAATAAATAAATAAATAAAT,CAAAT,CAAATAAATAAATAAATAAATAAAT 4164.97 . AC=2,0,0,1;AF=0.667,0.00,0.00,0.333;AN=3;AS_AltDP=39,14,1,15;AS_QD=33.61,31.26,26.93,34.55;DP=152;ExcessHet=0.0000;FS=0.000;MQ=57.45;QD=60.93;SOR=1.054;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,27,14,0,0:41:99:1741,0,599,1474,1474:0,0,18,23 1/4:0,12,0,1,15:28:99:2463,712,588,2353,707,2348,2307,661,2302,2296,549,0,544,498,411:0,0,11,17 +chrX 1428743 . T C 3346 . AC=3;AF=1.00;AN=3;AS_AltDP=110;AS_QD=30.69;DP=117;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.69;SOR=0.846;VarDP=110 GT:AD:DP:GQ:PL:SB 1:0,53:53:99:1586,0:0,0,30,23 1/1:0,57:57:99:1790,170,0:0,0,29,28 +chrX 1428887 . C CTTAA 607.97 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=16.59;BaseQRankSum=0.895;DP=97;ExcessHet=0.0000;FS=1.287;MQ=60.00;MQRankSum=0;QD=16.59;ReadPosRankSum=-0.411;SOR=1.133;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:52:99:52:0,1410 0/1:22,17:39:99:.:647,0,847:10,12,6,11 +chrX 1428959 . C T 707 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=15.04;BaseQRankSum=-0.025;DP=104;ExcessHet=0.0000;FS=4.236;MQ=59.87;MQRankSum=-0.825;QD=15.04;ReadPosRankSum=-0.131;SOR=0.283;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:52:99:52:0,1410 0/1:21,28:49:99:.:737,0,492:15,6,16,12 +chrX 1429138 . G A 2282 . AC=2;AF=0.667;AN=3;AS_AltDP=69;AS_QD=25.98;BaseQRankSum=-0.62;DP=93;ExcessHet=0.0000;FS=0.000;MQ=59.90;MQRankSum=1.184;QD=25.98;ReadPosRankSum=0.465;SOR=0.781;VarDP=89 GT:AD:DP:GQ:PL:SB 1:0,43:43:99:1651,0:0,0,22,21 0/1:20,26:46:99:661,0,493:10,10,11,15 +chrX 1429558 . G A 2363 . AC=2;AF=0.667;AN=3;AS_AltDP=79;AS_QD=21.18;BaseQRankSum=-2.474;DP=118;ExcessHet=0.0000;FS=1.666;MQ=59.96;MQRankSum=0;QD=21.18;ReadPosRankSum=-0.742;SOR=0.503;VarDP=113 GT:AD:DP:GQ:PL:SB 1:0,48:48:99:1616,0:0,0,28,20 0/1:34,31:65:99:777,0,967:20,14,14,17 +chrX 1430077 . C T 744 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=16.13;BaseQRankSum=-0.213;DP=119;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=16.13;ReadPosRankSum=-2.099;SOR=0.797;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:70:99:70:0,1517 0/1:19,29:48:99:.:774,0,451:10,9,16,13 +chrX 1430277 . A G 673 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=14.96;BaseQRankSum=-0.336;DP=118;ExcessHet=0.0000;FS=1.166;MQ=60.00;MQRankSum=0;QD=14.96;ReadPosRankSum=0.065;SOR=0.430;VarDP=47 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:70:99:70:.:.:0,1517 0|1:28,19:47:99:.:0|1:1430277_A_G:703,0,1117:1430277:17,11,10,9 +chrX 1430284 . T A 638 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=14.21;BaseQRankSum=0.832;DP=118;ExcessHet=0.0000;FS=1.172;MQ=60.00;MQRankSum=0;QD=14.21;ReadPosRankSum=0.066;SOR=0.420;VarDP=47 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:70:99:70:.:.:0,1517 0|1:29,18:47:99:.:0|1:1430277_A_G:668,0,1152:1430277:17,12,9,9 +chrX 1430418 . T C 740 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=12.62;BaseQRankSum=0.659;DP=134;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=12.62;ReadPosRankSum=0.181;SOR=0.772;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:70:99:70:0,1517 0/1:33,28:61:99:.:770,0,943:17,16,15,13 +chrX 1430703 . C T 4243 . AC=3;AF=1.00;AN=3;AS_AltDP=131;AS_QD=32.62;DP=136;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.62;SOR=0.739;VarDP=131 GT:AD:DP:GQ:PL:SB 1:0,67:67:99:2113,0:0,0,31,36 1/1:0,64:64:99:2160,192,0:0,0,33,31 +chrX 1430885 . AT A 864.97 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=13.70;BaseQRankSum=-0.742;DP=143;ExcessHet=0.0000;FS=0.910;MQ=60.00;MQRankSum=0;QD=13.70;ReadPosRankSum=0.473;SOR=0.818;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:73:99:73:0,1800 0/1:34,32:66:99:.:904,0,942:17,17,15,17 +chrX 1430965 . T C 420 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=8.18;BaseQRankSum=-0.78;DP=136;ExcessHet=0.0000;FS=1.085;MQ=60.00;MQRankSum=0;QD=8.18;ReadPosRankSum=-1.461;SOR=0.458;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:73:99:73:0,1800 0/1:35,20:55:99:.:450,0,1011:20,15,10,10 +chrX 1430991 . CTT C 332.97 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=6.00;BaseQRankSum=-1.711;DP=109;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=6.00;ReadPosRankSum=-0.19;SOR=0.678;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 1:27,35:62:99:.:372,0:13,14,17,18 0/0:.:46:80:46:0,80,1155 +chrX 1431098 . T C 331 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=7.68;BaseQRankSum=-0.432;DP=125;ExcessHet=0.0000;FS=2.531;MQ=60.00;MQRankSum=0;QD=7.68;ReadPosRankSum=0.388;SOR=0.609;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:75:99:75:0,1800 0/1:30,17:47:99:.:361,0,783:13,17,9,8 +chrX 1431355 . T A 2911 . AC=2;AF=0.667;AN=3;AS_AltDP=92;AS_QD=23.53;BaseQRankSum=0.909;DP=130;ExcessHet=0.0000;FS=1.641;MQ=60.00;MQRankSum=0;QD=23.53;ReadPosRankSum=0.625;SOR=0.912;VarDP=125 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,69:69:99:.:.:2350,0:.:0,0,37,32 0|1:33,23:56:99:0|1:1431355_T_A:591,0,1258:1431355:17,16,15,8 +chrX 1431357 . T C 701 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=13.05;BaseQRankSum=-1.048;DP=131;ExcessHet=0.0000;FS=3.754;MQ=60.00;MQRankSum=0;QD=13.05;ReadPosRankSum=-0.453;SOR=0.330;VarDP=56 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:75:99:75:.:.:0,1716 0|1:25,31:56:99:.:1|0:1431355_T_A:731,0,877:1431355:16,9,16,15 +chrX 1431451 . A G 894 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=14.44;BaseQRankSum=1.108;DP=143;ExcessHet=0.0000;FS=5.000;MQ=60.00;MQRankSum=0;QD=14.44;ReadPosRankSum=-0.834;SOR=0.942;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:75:99:75:0,1716 0/1:30,34:64:99:.:924,0,771:17,13,14,20 +chrX 1431491 . CTACT C 1097.97 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=16.97;BaseQRankSum=2.042;DP=144;ExcessHet=0.0000;FS=0.924;MQ=60.00;MQRankSum=0;QD=16.97;ReadPosRankSum=1.031;SOR=0.551;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:75:99:75:0,1716 0/1:37,30:67:99:.:1137,0,1447:20,17,15,15 +chrX 1431640 . T A 5107 . AC=3;AF=1.00;AN=3;AS_AltDP=156;AS_QD=32.93;DP=162;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.93;SOR=1.261;VarDP=156 GT:AD:DP:GQ:PL:SB 1:0,84:84:99:2747,0:0,0,31,53 1/1:0,72:72:99:2390,216,0:0,0,29,43 +chrX 1431804 . G A 3791 . AC=2;AF=0.667;AN=3;AS_AltDP=93;AS_QD=29.39;BaseQRankSum=1.268;DP=132;ExcessHet=0.0000;FS=10.941;MQ=60.00;MQRankSum=0;QD=29.39;ReadPosRankSum=0.368;SOR=0.685;VarDP=130 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,71:71:99:.:.:3070,0:.:0,0,40,31 0|1:37,22:59:99:0|1:1431804_G_A:751,0,1456:1431804:14,23,12,10 +chrX 1431821 . A T 3599 . AC=2;AF=0.667;AN=3;AS_AltDP=88;AS_QD=28.80;BaseQRankSum=0.078;DP=126;ExcessHet=0.0000;FS=6.123;MQ=60.00;MQRankSum=0;QD=28.80;ReadPosRankSum=-0.573;SOR=0.494;VarDP=126 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,68:68:99:.:.:2955,0:.:0,0,38,30 0|1:38,20:58:99:0|1:1431804_G_A:674,0,1495:1431804:15,23,8,12 +chrX 1431867 . G C 1567 . AC=1;AF=0.333;AN=3;AS_AltDP=41;AS_QD=25.76;BaseQRankSum=1.534;DP=123;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=25.76;ReadPosRankSum=0.164;SOR=0.761;VarDP=62 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:60:99:60:.:.:0,1622 0|1:21,41:62:99:.:0|1:1431867_G_C:1597,0,685:1431867:9,12,17,24 +chrX 1431886 . G C 1666 . AC=1;AF=0.333;AN=3;AS_AltDP=44;AS_QD=26.50;BaseQRankSum=2.042;DP=126;ExcessHet=0.0000;FS=7.377;MQ=60.00;MQRankSum=0;QD=26.50;ReadPosRankSum=-1.246;SOR=0.556;VarDP=64 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:60:99:60:.:.:0,1622 0|1:20,44:64:99:.:0|1:1431867_G_C:1696,0,605:1431867:7,13,24,20 +chrX 1432077 . C G 2192 . AC=2;AF=0.667;AN=3;AS_AltDP=72;AS_QD=21.37;BaseQRankSum=0.023;DP=108;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=21.37;ReadPosRankSum=0.493;SOR=0.674;VarDP=104 GT:AD:DP:GQ:PL:SB 1:0,46:46:99:1544,0:0,0,17,29 0/1:32,26:58:99:678,0,862:14,18,15,11 +chrX 1432656 . C T 514 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=12.95;BaseQRankSum=0.112;DP=108;ExcessHet=0.0000;FS=12.104;MQ=58.84;MQRankSum=-0.507;QD=12.95;ReadPosRankSum=0.176;SOR=0.960;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,1483 0/1:21,21:42:99:.:544,0,529:6,15,13,8 +chrX 1432748 . G C 687 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=9.96;BaseQRankSum=-0.182;DP=141;ExcessHet=0.0000;FS=8.240;MQ=57.60;MQRankSum=-0.405;QD=9.96;ReadPosRankSum=0.158;SOR=0.208;VarDP=72 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,1483 0/1:38,34:72:99:.:717,0,1144:12,26,17,17 +chrX 1432760 . T C 5770 . AC=2;AF=0.667;AN=3;AS_AltDP=135;AS_QD=26.29;BaseQRankSum=2.046;DP=158;ExcessHet=0.0000;FS=0.000;MQ=57.68;MQRankSum=0.38;QD=38.93;ReadPosRankSum=-0.939;SOR=0.785;VarDP=149 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,76:76:99:.:.:3420,0:.:0,0,31,45 0|1:14,59:73:99:0|1:1432760_T_C:2380,0,322:1432760:6,8,25,34 +chrX 1432762 . C G 5941 . AC=2;AF=0.667;AN=3;AS_AltDP=139;AS_QD=27.44;BaseQRankSum=2.045;DP=162;ExcessHet=0.0000;FS=0.000;MQ=57.74;MQRankSum=0.285;QD=39.03;ReadPosRankSum=-1.205;SOR=0.839;VarDP=153 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,77:77:99:.:.:3465,0:.:0,0,31,46 0|1:14,62:76:99:0|1:1432760_T_C:2506,0,313:1432760:6,8,25,37 +chrX 1432786 . G A 6139 . AC=2;AF=0.667;AN=3;AS_AltDP=144;AS_QD=32.56;BaseQRankSum=2.708;DP=175;ExcessHet=0.0000;FS=3.126;MQ=58.13;MQRankSum=-1.614;QD=37.39;ReadPosRankSum=-0.643;SOR=1.076;VarDP=165 GT:AD:DP:GQ:PL:SB 1:0,84:84:99:3780,0:0,0,36,48 0/1:21,60:81:99:2389,0,587:10,11,21,39 +chrX 1432789 . C A 6272 . AC=2;AF=0.667;AN=3;AS_AltDP=147;AS_QD=31.66;BaseQRankSum=2.606;DP=182;ExcessHet=0.0000;FS=1.967;MQ=58.20;MQRankSum=-1.548;QD=37.74;ReadPosRankSum=-0.931;SOR=0.962;VarDP=167 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,85:85:99:.:.:3815,0:.:0,0,36,49 0|1:20,62:82:99:0|1:1432760_T_C:2487,0,504:1432760:9,11,22,40 +chrX 1432816 . G A 257 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=2.87;BaseQRankSum=-1.461;DP=228;ExcessHet=0.0000;FS=0.888;MQ=58.56;MQRankSum=0.464;QD=2.87;ReadPosRankSum=-0.514;SOR=0.838;VarDP=100 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:116:99:116:0,1075 0/1:75,25:100:99:.:287,0,2764:30,45,9,16 +chrX 1432824 . G A 117 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=1.29;BaseQRankSum=0.532;DP=241;ExcessHet=0.0000;FS=6.259;MQ=58.44;MQRankSum=-0.101;QD=1.29;ReadPosRankSum=-0.858;SOR=1.017;VarDP=114 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:116:99:116:.:.:0,1075 0|1:101,13:114:99:.:0|1:1432824_G_A:147,0,3908:1432824:42,59,8,5 +chrX 1432859 . C A 366 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=3.19;BaseQRankSum=1.322;DP=253;ExcessHet=0.0000;FS=12.305;MQ=59.02;MQRankSum=-1.047;QD=3.19;ReadPosRankSum=-0.159;SOR=1.532;VarDP=124 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:116:99:116:.:.:0,1075 0|1:102,22:124:99:.:0|1:1432824_G_A:396,0,3371:1432824:45,57,15,7 +chrX 1432955 . G A 5331 . AC=2;AF=0.667;AN=3;AS_AltDP=144;AS_QD=29.46;BaseQRankSum=1.415;DP=201;ExcessHet=0.0000;FS=0.000;MQ=57.35;MQRankSum=0.203;QD=29.46;ReadPosRankSum=0.342;SOR=0.753;VarDP=182 GT:AD:DP:GQ:PL:SB 1:0,98:98:99:4224,0:0,0,58,40 0/1:38,46:84:99:1137,0,835:22,16,27,19 +chrX 1432967 . A G 6344 . AC=2;AF=0.667;AN=3;AS_AltDP=151;AS_QD=30.50;BaseQRankSum=-0.645;DP=197;ExcessHet=0.0000;FS=2.683;MQ=57.33;MQRankSum=-2.506;QD=35.41;ReadPosRankSum=1.063;SOR=0.461;VarDP=180 GT:AD:DP:GQ:PL:SB 1:0,94:94:99:4179,0:0,0,56,38 0/1:29,57:86:99:2195,0,984:19,10,32,25 +chrX 1432968 . T G 5815 . AC=2;AF=0.667;AN=3;AS_AltDP=141;AS_QD=33.02;BaseQRankSum=0.964;DP=196;ExcessHet=0.0000;FS=0.702;MQ=57.32;MQRankSum=-1.198;QD=33.02;ReadPosRankSum=0.771;SOR=0.790;VarDP=177 GT:AD:DP:GQ:PL:SB 1:0,92:92:99:4109,0:0,0,55,37 0/1:36,49:85:99:1736,0,1271:21,15,30,19 +chrX 1433501 . TA T,TAA 291.97 . AC=1,2;AF=0.333,0.667;AN=3;AS_AltDP=18,20;AS_QD=8.53,9.38;BaseQRankSum=-0.503;DP=78;ExcessHet=0.0000;FS=0.000;MQ=58.94;MQRankSum=0;QD=8.49;ReadPosRankSum=-0.158;SOR=0.267;VarDP=39 GT:AD:DP:GQ:PL:SB 2:1,11,11:23:13:81,13,0:1,0,12,10 1/2:0,7,9:16:99:250,156,223,134,0,158:0,0,8,8 +chrX 1433935 . G A 854 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=6.80;BaseQRankSum=1.074;DP=131;ExcessHet=0.0000;FS=2.201;MQ=60.00;MQRankSum=0;QD=6.80;ReadPosRankSum=0.853;SOR=0.898;VarDP=130 GT:AD:DP:GQ:PL:SB 1:30,32:62:43:43,0:16,14,20,12 0/1:37,31:68:99:841,0,1010:18,19,15,16 +chrX 1434489 . C CAA,CAAAAAA 530.97 . AC=1,0;AF=0.333,0.00;AN=3;AS_AltDP=11,0;AS_QD=21.92,10.87;BaseQRankSum=-1.203;DP=101;ExcessHet=0.0000;FS=8.852;MQ=60.00;MQRankSum=0;QD=21.92;ReadPosRankSum=0.278;SOR=1.714;VarDP=26 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:23:56:0,23,23 0/1:15,11,0:26:99:.:570,0,582,407,616,1014:9,6,3,8 +chrX 1434504 . G A 515 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=14.34;BaseQRankSum=0.532;DP=103;ExcessHet=0.0000;FS=4.847;MQ=60.00;MQRankSum=0;QD=14.34;ReadPosRankSum=0.585;SOR=0.599;VarDP=38 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:23:56:0,23 0/1:20,18:38:99:.:545,0,728:13,7,8,10 +chrX 1434782 . G A 365 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=12.74;BaseQRankSum=2.24;DP=88;ExcessHet=0.0000;FS=1.400;MQ=59.19;MQRankSum=-0.968;QD=12.74;ReadPosRankSum=0.692;SOR=0.645;VarDP=31 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:23:56:0,23 0/1:16,15:31:99:.:395,0,382:9,7,7,8 +chrX 1434794 . CAA C,AAA 330 . AC=1,0;AF=0.333,0.00;AN=3;AS_AltDP=13,3;AS_QD=13.85,0.00;BaseQRankSum=-1.873;DP=101;ExcessHet=0.0000;FS=5.781;MQ=59.05;MQRankSum=-0.832;QD=12.41;ReadPosRankSum=1.338;SOR=0.595;VarDP=29 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:23:56:0,23,23 0/1:13,13,3:29:99:.:360,0,596,399,363,1053:9,4,7,9 +chrX 1434979 . G C 674 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=10.35;BaseQRankSum=2.321;DP=130;ExcessHet=0.0000;FS=2.026;MQ=60.00;MQRankSum=0;QD=10.35;ReadPosRankSum=0.495;SOR=0.886;VarDP=68 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:23:56:0,23 0/1:41,27:68:99:.:704,0,1070:21,20,12,15 +chrX 1435249 . C T 1172 . AC=1;AF=0.333;AN=3;AS_AltDP=44;AS_QD=14.84;BaseQRankSum=0.716;DP=138;ExcessHet=0.0000;FS=0.836;MQ=60.00;MQRankSum=0;QD=14.84;ReadPosRankSum=-0.147;SOR=0.738;VarDP=81 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:23:56:0,23 0/1:37,44:81:99:.:1202,0,933:18,19,23,21 +chrX 1435259 . GA G 1245.97 . AC=1;AF=0.333;AN=3;AS_AltDP=39;AS_QD=17.36;BaseQRankSum=0.318;DP=135;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=17.36;ReadPosRankSum=0.26;SOR=0.677;VarDP=74 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:23:56:0,23 0/1:35,39:74:99:.:1285,0,1164:19,16,21,18 +chrX 1435756 . T C 724 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=16.76;BaseQRankSum=1.914;DP=102;ExcessHet=0.0000;FS=1.143;MQ=60.00;MQRankSum=0;QD=16.76;ReadPosRankSum=1.203;SOR=0.495;VarDP=45 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:56:23:56:.:.:0,23 0|1:25,20:45:99:.:0|1:1435756_T_C:754,0,957:1435756:11,14,10,10 +chrX 1435762 . T C 739 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=17.09;BaseQRankSum=-0.575;DP=101;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=17.09;ReadPosRankSum=0.728;SOR=0.807;VarDP=45 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:56:23:56:.:.:0,23 0|1:24,21:45:99:.:0|1:1435756_T_C:769,0,923:1435756:11,13,9,12 +chrX 1436104 . C A 851 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=16.31;BaseQRankSum=2.277;DP=111;ExcessHet=0.0000;FS=16.583;MQ=60.00;MQRankSum=0;QD=16.31;ReadPosRankSum=0.52;SOR=2.107;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:23:56:0,23 0/1:22,32:54:99:.:881,0,462:9,13,24,8 +chrX 1436192 . G C 1122 . AC=1;AF=0.333;AN=3;AS_AltDP=42;AS_QD=17.45;BaseQRankSum=-0.277;DP=123;ExcessHet=0.0000;FS=2.147;MQ=59.51;MQRankSum=2.345;QD=17.45;ReadPosRankSum=-1.667;SOR=0.777;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:23:56:0,23 0/1:24,42:66:99:.:1152,0,556:11,13,23,19 +chrX 1436260 . G A 1535 . AC=1;AF=0.333;AN=3;AS_AltDP=40;AS_QD=20.06;BaseQRankSum=1.011;DP=135;ExcessHet=0.0000;FS=1.899;MQ=59.52;MQRankSum=-0.968;QD=20.06;ReadPosRankSum=1.332;SOR=1.018;VarDP=78 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:56:23:56:.:.:0,23 0|1:38,40:78:99:.:0|1:1436260_G_A:1565,0,1475:1436260:17,21,15,25 +chrX 1436264 . C G 1567 . AC=1;AF=0.333;AN=3;AS_AltDP=41;AS_QD=20.22;BaseQRankSum=0.149;DP=136;ExcessHet=0.0000;FS=1.851;MQ=59.49;MQRankSum=-0.943;QD=20.22;ReadPosRankSum=0.995;SOR=0.942;VarDP=79 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:56:23:56:.:.:0,23 0|1:38,41:79:99:.:0|1:1436260_G_A:1597,0,1472:1436260:17,21,16,25 +chrX 1436266 . G A 1567 . AC=1;AF=0.333;AN=3;AS_AltDP=41;AS_QD=20.22;BaseQRankSum=1.628;DP=137;ExcessHet=0.0000;FS=1.851;MQ=59.50;MQRankSum=-0.943;QD=20.22;ReadPosRankSum=0.163;SOR=0.942;VarDP=79 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:56:23:56:.:.:0,23 0|1:38,41:79:99:.:0|1:1436260_G_A:1597,0,1472:1436260:17,21,16,25 +chrX 1436303 . T A 1011 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=13.70;BaseQRankSum=0.375;DP=136;ExcessHet=0.0000;FS=3.132;MQ=59.28;MQRankSum=-0.57;QD=13.70;ReadPosRankSum=-1.117;SOR=1.186;VarDP=76 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:23:56:0,23 0/1:38,38:76:99:.:1041,0,1016:18,20,14,24 +chrX 1436439 . G A 328 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=9.94;BaseQRankSum=1.169;DP=101;ExcessHet=0.0000;FS=1.409;MQ=54.00;MQRankSum=0.405;QD=9.94;ReadPosRankSum=-0.791;SOR=1.230;VarDP=36 GT:AD:DP:GQ:MIN_DP:PL:SB 1:13,23:36:99:.:358,0:7,6,15,8 0/0:.:61:99:61:0,100,1728 +chrX 1436497 . C T 971 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=10.43;BaseQRankSum=2.424;DP=110;ExcessHet=0.0000;FS=2.676;MQ=51.43;MQRankSum=1.971;QD=10.43;ReadPosRankSum=0.259;SOR=0.456;VarDP=96 GT:AD:DP:GQ:PL:SB 1:18,28:46:99:282,0:14,4,15,13 0/1:24,26:50:99:719,0,590:10,14,12,14 +chrX 1436927 . T C 1023 . AC=2;AF=0.667;AN=3;AS_AltDP=70;AS_QD=8.16;BaseQRankSum=1.694;DP=137;ExcessHet=0.0000;FS=5.332;MQ=59.90;MQRankSum=1.155;QD=8.16;ReadPosRankSum=-0.326;SOR=0.944;VarDP=129 GT:AD:DP:GQ:PL:SB 1:32,36:68:99:119,0:16,16,18,18 0/1:27,34:61:99:934,0,636:12,15,22,12 +chrX 1437035 . C G 936 . AC=2;AF=0.667;AN=3;AS_AltDP=50;AS_QD=11.64;BaseQRankSum=0.193;DP=88;ExcessHet=0.0000;FS=7.550;MQ=59.99;MQRankSum=0;QD=11.64;ReadPosRankSum=0.82;SOR=0.241;VarDP=83 GT:AD:DP:GQ:PL:SB 1:16,22:38:99:208,0:4,12,11,11 0/1:17,28:45:99:758,0,391:7,10,14,14 +chrX 1437227 . A G 993 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=17.05;BaseQRankSum=0.174;DP=124;ExcessHet=0.0000;FS=0.000;MQ=55.09;MQRankSum=-4.486;QD=17.05;ReadPosRankSum=2.293;SOR=0.606;VarDP=60 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:60:99:60:.:.:0,728 0|1:31,29:60:99:.:0|1:1437227_A_G:1023,0,772:1437227:9,22,9,20 +chrX 1437242 . G A 601 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=10.69;BaseQRankSum=-0.203;DP=124;ExcessHet=0.0000;FS=0.000;MQ=53.80;MQRankSum=-3.319;QD=10.69;ReadPosRankSum=0.663;SOR=0.619;VarDP=59 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:60:99:60:.:.:0,728 0|1:32,27:59:99:.:0|1:1437227_A_G:631,0,1202:1437227:9,23,8,19 +chrX 1438059 . T C 645 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=14.06;BaseQRankSum=-0.302;DP=123;ExcessHet=0.0000;FS=17.532;MQ=60.00;MQRankSum=0;QD=14.06;ReadPosRankSum=-1.377;SOR=2.252;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:74:39:73:0,39 0/1:22,26:48:99:.:675,0,556:13,9,6,20 +chrX 1438207 . C A 605 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=5.83;BaseQRankSum=2.92;DP=115;ExcessHet=0.0000;FS=6.182;MQ=59.95;MQRankSum=0;QD=5.83;ReadPosRankSum=0;SOR=0.318;VarDP=109 GT:AD:DP:GQ:PL:SB 1:38,38:76:99:172,0:13,25,17,21 0/1:16,17:33:99:463,0,347:5,11,8,9 +chrX 1438282 . CA C 1856.97 . AC=2;AF=0.667;AN=3;AS_AltDP=74;AS_QD=19.35;BaseQRankSum=-0.324;DP=115;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=19.35;ReadPosRankSum=-0.866;SOR=0.817;VarDP=98 GT:AD:DP:GQ:PL:SB 1:1,55:56:99:1508,0:1,0,34,21 0/1:23,19:42:99:388,0,495:13,10,11,8 +chrX 1438381 . C G 923 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=7.62;BaseQRankSum=1.204;DP=130;ExcessHet=0.0000;FS=21.480;MQ=60.00;MQRankSum=0;QD=7.62;ReadPosRankSum=0.63;SOR=0.707;VarDP=125 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:31,41:72:99:.:.:223,0:.:19,12,18,23 0|1:33,20:53:99:0|1:1438381_C_G:730,0,1284:1438381:24,9,8,12 +chrX 1438387 . A T 3867 . AC=2;AF=0.667;AN=3;AS_AltDP=91;AS_QD=31.43;BaseQRankSum=-1.115;DP=126;ExcessHet=0.0000;FS=13.888;MQ=60.00;MQRankSum=0;QD=31.43;ReadPosRankSum=0.29;SOR=0.372;VarDP=124 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,72:72:99:.:.:3199,0:.:0,0,36,36 0|1:33,19:52:99:0|1:1438381_C_G:698,0,1318:1438381:23,10,7,12 +chrX 1438411 . T C 3842 . AC=2;AF=0.667;AN=3;AS_AltDP=90;AS_QD=31.74;BaseQRankSum=0.452;DP=124;ExcessHet=0.0000;FS=8.199;MQ=60.00;MQRankSum=0;QD=31.74;ReadPosRankSum=-0.8;SOR=0.520;VarDP=122 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,70:70:99:.:.:3140,0:.:0,0,34,36 0|1:32,20:52:99:0|1:1438381_C_G:732,0,1283:1438381:20,12,8,12 +chrX 1438414 . G C 3842 . AC=2;AF=0.667;AN=3;AS_AltDP=90;AS_QD=31.74;BaseQRankSum=0.04;DP=127;ExcessHet=0.0000;FS=8.199;MQ=60.00;MQRankSum=0;QD=31.74;ReadPosRankSum=-0.828;SOR=0.520;VarDP=122 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,70:70:99:.:.:3140,0:.:0,0,34,36 0|1:32,20:52:99:0|1:1438381_C_G:732,0,1283:1438381:20,12,8,12 +chrX 1439179 . G A 1079 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=10.17;BaseQRankSum=1.573;DP=115;ExcessHet=0.0000;FS=9.529;MQ=60.00;MQRankSum=0;QD=10.17;ReadPosRankSum=1.742;SOR=0.228;VarDP=109 GT:AD:DP:GQ:PL:SB 1:23,30:53:99:289,0:17,6,17,13 0/1:26,30:56:99:820,0,696:18,8,16,14 +chrX 1439313 . G C 3276 . AC=2;AF=0.667;AN=3;AS_AltDP=106;AS_QD=23.28;BaseQRankSum=2.171;DP=149;ExcessHet=0.0000;FS=2.494;MQ=60.00;MQRankSum=0;QD=23.28;ReadPosRankSum=1.677;SOR=0.596;VarDP=142 GT:AD:DP:GQ:PL:SB 1:0,57:57:99:1940,0:0,0,27,30 0/1:36,49:85:99:1366,0,834:20,16,24,25 +chrX 1439836 . CA C 43.97 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=2.31;BaseQRankSum=-1.193;DP=95;ExcessHet=0.0000;FS=0.000;MQ=59.65;MQRankSum=1.113;QD=2.31;ReadPosRankSum=0.781;SOR=0.683;VarDP=36 GT:AD:DP:GQ:MIN_DP:PL:SB 1:17,19:36:83:.:83,0:8,9,9,10 0/0:.:47:0:47:0,0,1046 +chrX 1442105 . G A 4397 . AC=3;AF=1.00;AN=3;AS_AltDP=135;AS_QD=32.79;DP=141;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.79;SOR=0.973;VarDP=135 GT:AD:DP:GQ:PL:SB 1:0,62:62:99:2050,0:0,0,34,28 1/1:0,73:73:99:2377,219,0:0,0,42,31 +chrX 1442798 . T C 2053 . AC=3;AF=1.00;AN=3;AS_AltDP=89;AS_QD=18.27;BaseQRankSum=-0.084;DP=118;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=18.27;ReadPosRankSum=0.66;SOR=0.697;VarDP=114 GT:AD:DP:GQ:PL:SB 1:25,35:60:99:377,0:15,10,22,13 1/1:0,54:54:99:1706,161,0:0,0,31,23 +chrX 1442906 . A T 3704 . AC=3;AF=1.00;AN=3;AS_AltDP=119;AS_QD=31.38;DP=122;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.38;SOR=1.150;VarDP=119 GT:AD:DP:GQ:PL:SB 1:0,45:45:99:1423,0:0,0,23,22 1/1:0,74:74:99:2311,221,0:0,0,48,26 +chrX 1443049 . A G 5676 . AC=3;AF=1.00;AN=3;AS_AltDP=135;AS_QD=30.74;BaseQRankSum=2.731;DP=138;ExcessHet=0.0000;FS=6.378;MQ=59.47;MQRankSum=-0.204;QD=41.65;ReadPosRankSum=-0.09;SOR=0.291;VarDP=137 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:2,55:57:99:.:.:2308,0:.:2,0,27,28 1|1:0,80:80:99:0|1:1443049_A_G:3398,240,0:1443049:0,0,37,43 +chrX 1443058 . G GAC 6046.97 . AC=3;AF=1.00;AN=3;AS_AltDP=144;AS_QD=28.54;BaseQRankSum=0.818;DP=148;ExcessHet=0.0000;FS=3.040;MQ=59.29;MQRankSum=-0.257;QD=41.68;ReadPosRankSum=0.147;SOR=0.155;VarDP=146 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:2,65:67:99:.:.:2707,0:.:2,0,33,32 1|1:0,79:79:99:0|1:1443049_A_G:3379,237,0:1443049:0,0,38,41 +chrX 1443140 . C T,CACCGCCGTCGTGGACACAT 2419 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=32,27;AS_QD=32.83,20.82;BaseQRankSum=1.017;DP=128;ExcessHet=0.0000;FS=9.362;MQ=58.55;MQRankSum=2.493;QD=37.11;ReadPosRankSum=-1.392;SOR=0.084;VarDP=66 GT:AD:DP:GQ:PL:SB 1:4,20,0:24:99:430,0,558:4,0,12,8 1/2:3,12,27:42:99:2019,1019,1083,357,0,404:2,1,18,21 +chrX 1443163 . G A 2227 . AC=3;AF=1.00;AN=3;AS_AltDP=69;AS_QD=30.50;BaseQRankSum=1.959;DP=107;ExcessHet=0.0000;FS=1.922;MQ=57.99;MQRankSum=2.263;QD=30.50;ReadPosRankSum=-0.527;SOR=0.289;VarDP=74 GT:AD:DP:GQ:PL:SB 1:4,23:27:99:491,0:4,0,14,9 1/1:1,46:47:99:1766,116,0:0,1,27,19 +chrX 1443253 . ACGCCGCCGTCTTGGACACACACCGCCATCATGGACACACACCGCCATCTTGGACACACACCGCCATCTTGGACACACACCGCCATCTTGGACAGACACCGCCATCTTGGACACACACCACCATCATGGACACACGC A,ACGCCATCTTGGACACACACCGCCATCTTGGACACACACCGCCATCTTGGACAGACACCGCCATCTTGGACACACACCACCATCATGGACACACGC,ACGCCGTCTTGGACACACACCGCCATCATGGACACACACCGCCATCTTGGACACACACCGCCATCTTGGACACACACCGCCATCTTGGACAGACACCGCCATCTTGGACACACACCACCATCATGGACACACGC 3362.97 . AC=2,1,0;AF=0.667,0.333,0.00;AN=3;AS_AltDP=60,11,0;AS_QD=26.64,32.46,27.49;DP=99;ExcessHet=0.0000;FS=0.000;MQ=56.30;QD=47.92;SOR=0.779;VarDP=71 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 2:0,8,11,0:19:99:.:.:1365,680,0,494:.:0,0,10,9 1|1:0,52,0,0:52:99:0|1:1443253_ACGCCGCCGTCTTGGACACACACCGCCATCATGGACACACACCGCCATCTTGGACACACACCGCCATCTTGGACACACACCGCCATCTTGGACAGACACCGCCATCTTGGACACACACCACCATCATGGACACACGC_A:2037,144,0,2037,144,2037,2037,144,2037,2037:1443253:0,0,24,28 +chrX 1443302 . TTGGACACACACCGCCATCTTGGACACACACCGCCATCTTGGACAGACACCGCCATCTTGGACACACACCACCATCA *,T 1185.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=8,9;AS_QD=0.00,29.03;DP=95;ExcessHet=0.0000;FS=0.000;MQ=55.00;QD=72.06;SOR=0.722;VarDP=17 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 2:0,8,9:17:19:.:.:1225,19,0:.:0,0,10,7 1|1:0,52,0:52:99:0|1:1443253_ACGCCGCCGTCTTGGACACACACCGCCATCATGGACACACACCGCCATCTTGGACACACACCGCCATCTTGGACACACACCGCCATCTTGGACAGACACCGCCATCTTGGACACACACCACCATCATGGACACACGC_A:2037,144,0,2037,144,2037:1443253:0,0,24,28 +chrX 1443397 . T A,* 39 . AC=1,0;AF=1.00,0.00;AN=1;AS_AltDP=12,0;AS_QD=3.14,0.00;BaseQRankSum=-1.187;DP=93;ExcessHet=0.0000;FS=6.373;MQ=53.90;MQRankSum=-0.462;QD=3.14;ReadPosRankSum=-0.463;SOR=0.707;VarDP=22 GT:AD:DP:GQ:MIN_DP:PL:SB 1:10,12,0:22:69:.:69,0,1430:7,3,5,7 ./.:.:47:0:47:0,0,0,0,0,0 +chrX 1443416 . T A 1889 . AC=2;AF=0.667;AN=3;AS_AltDP=48;AS_QD=30.72;BaseQRankSum=-0.353;DP=96;ExcessHet=0.0000;FS=0.000;MQ=57.67;MQRankSum=-0.385;QD=39.16;ReadPosRankSum=-1.228;SOR=0.257;VarDP=49 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:46:10:46:.:.:0,10 1|1:1,48:49:99:.:0|1:1443253_ACGCCGCCGTCTTGGACACACACCGCCATCATGGACACACACCGCCATCTTGGACACACACCGCCATCTTGGACACACACCGCCATCTTGGACAGACACCGCCATCTTGGACACACACCACCATCATGGACACACGC_A:1919,126,0:1443253:0,1,23,25 +chrX 1443587 . C T 4379 . AC=3;AF=1.00;AN=3;AS_AltDP=108;AS_QD=29.48;BaseQRankSum=1.04;DP=111;ExcessHet=0.0000;FS=0.000;MQ=58.96;MQRankSum=-0.358;QD=40.08;ReadPosRankSum=0.56;SOR=0.808;VarDP=110 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:2,67:69:99:.:.:2753,0:.:1,1,31,36 1|1:0,41:41:99:0|1:1443587_C_T:1656,123,0:1443587:0,0,20,21 +chrX 1443625 . C T 4807 . AC=3;AF=1.00;AN=3;AS_AltDP=115;AS_QD=33.13;BaseQRankSum=1.728;DP=117;ExcessHet=0.0000;FS=3.086;MQ=58.61;MQRankSum=-0.285;QD=41.70;ReadPosRankSum=-1.458;SOR=0.306;VarDP=116 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,69:70:99:.:.:2861,0:.:1,0,30,39 1|1:0,46:46:99:0|1:1443587_C_T:1976,138,0:1443587:0,0,26,20 +chrX 1443632 . GTGGACAGACACCGCCATCA G 4352.97 . AC=3;AF=1.00;AN=3;AS_AltDP=104;AS_QD=30.72;DP=118;ExcessHet=0.0000;FS=0.000;MQ=58.39;MQRankSum=-0.305;QD=41.83;SOR=0.239;VarDP=105 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,61:62:99:.:.:2524,0:.:1,0,28,33 1|1:0,43:43:99:0|1:1443587_C_T:1868,130,0:1443587:0,0,25,18 +chrX 1444109 . A G 1944 . AC=2;AF=0.667;AN=3;AS_AltDP=64;AS_QD=30.84;DP=131;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.84;SOR=1.044;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:19:65:0,19 1/1:0,64:64:99:.:1974,191,0:0,0,27,37 +chrX 1444192 . C T 1889 . AC=3;AF=1.00;AN=3;AS_AltDP=75;AS_QD=20.41;BaseQRankSum=0.438;DP=98;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=20.41;ReadPosRankSum=-0.628;SOR=0.728;VarDP=94 GT:AD:DP:GQ:PL:SB 1:19,25:44:99:222,0:9,10,12,13 1/1:0,50:50:99:1697,150,0:0,0,23,27 +chrX 1444208 . AT A 433.97 . AC=1;AF=0.500;AN=2;AS_AltDP=27;AS_QD=14.33;BaseQRankSum=-1.343;DP=96;ExcessHet=0.0000;FS=25.668;MQ=60.00;MQRankSum=0;QD=14.33;ReadPosRankSum=-1.261;SOR=1.601;VarDP=33 GT:AD:DP:GQ:MIN_DP:PL:SB .:.:47:0:47:0,0 0/1:6,27:33:6:.:473,0,6:6,0,8,19 +chrX 1444507 . G C 1750 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=30.17;DP=121;ExcessHet=0.0000;FS=0.000;MQ=59.92;QD=30.17;SOR=0.950;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,303 1/1:0,59:59:99:.:1780,176,0:0,0,33,26 +chrX 1444765 . T C 1724 . AC=3;AF=1.00;AN=3;AS_AltDP=89;AS_QD=14.62;BaseQRankSum=-2.638;DP=125;ExcessHet=0.0000;FS=5.305;MQ=60.00;MQRankSum=0;QD=14.62;ReadPosRankSum=0.622;SOR=0.317;VarDP=120 GT:AD:DP:GQ:PL:SB 1:31,37:68:88:88,0:20,11,21,16 1/1:0,52:52:99:1666,155,0:0,0,25,27 +chrX 1445633 . T C 2005 . AC=3;AF=1.00;AN=3;AS_AltDP=92;AS_QD=17.70;BaseQRankSum=-3.915;DP=118;ExcessHet=0.0000;FS=0.879;MQ=60.00;MQRankSum=0;QD=17.70;ReadPosRankSum=-1.007;SOR=0.549;VarDP=115 GT:AD:DP:GQ:PL:SB 1:23,40:63:99:429,0:10,13,19,21 1/1:0,52:52:99:1606,154,0:0,0,25,27 +chrX 1446139 . G C 3258 . AC=3;AF=1.00;AN=3;AS_AltDP=109;AS_QD=23.32;BaseQRankSum=0.43;DP=143;ExcessHet=0.0000;FS=1.622;MQ=60.00;MQRankSum=0;QD=23.32;ReadPosRankSum=0.634;SOR=0.912;VarDP=141 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:32,36:68:99:.:.:209,0:.:16,16,22,14 1|1:0,73:73:99:0|1:1446139_G_C:3079,219,0:1446139:0,0,38,35 +chrX 1446162 . G A 3519 . AC=3;AF=1.00;AN=3;AS_AltDP=112;AS_QD=25.53;BaseQRankSum=1.629;DP=142;ExcessHet=0.0000;FS=1.745;MQ=59.97;MQRankSum=-0.812;QD=25.53;ReadPosRankSum=-1.938;SOR=0.929;VarDP=139 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:27,38:65:99:.:.:423,0:.:14,13,29,9 1|1:0,74:74:99:0|1:1446139_G_C:3126,223,0:1446139:0,0,35,39 +chrX 1446500 . A AT 696.97 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=9.09;BaseQRankSum=2.094;DP=107;ExcessHet=0.0000;FS=6.171;MQ=59.49;MQRankSum=0.535;QD=9.09;ReadPosRankSum=0.922;SOR=1.327;VarDP=81 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:13,27:40:99:.:.:281,0:.:8,5,16,11 0|1:16,25:41:99:0|1:1446500_A_AT:455,0,249:1446500:6,10,17,8 +chrX 1448747 . C G 446 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=9.33;BaseQRankSum=-0.54;DP=114;ExcessHet=0.0000;FS=8.302;MQ=59.19;MQRankSum=-1.75;QD=9.33;ReadPosRankSum=-1.39;SOR=0.525;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,418 0/1:31,20:51:99:.:476,0,865:10,21,11,9 +chrX 1449219 . G A 1026 . AC=1;AF=0.333;AN=3;AS_AltDP=39;AS_QD=15.76;BaseQRankSum=2.029;DP=130;ExcessHet=0.0000;FS=6.622;MQ=60.00;MQRankSum=0;QD=15.76;ReadPosRankSum=0.75;SOR=0.731;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,418 0/1:28,39:67:99:.:1056,0,658:17,11,17,22 +chrX 1449699 . C A 356 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=11.70;BaseQRankSum=0.573;DP=97;ExcessHet=0.0000;FS=1.363;MQ=58.78;MQRankSum=1.617;QD=11.70;ReadPosRankSum=-1.428;SOR=0.990;VarDP=33 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,418 0/1:15,18:33:99:.:386,0,294:6,9,6,12 +chrX 1450540 . A C 97 . AC=1;AF=0.333;AN=3;AS_AltDP=9;AS_QD=3.97;BaseQRankSum=-2.698;DP=93;ExcessHet=0.0000;FS=3.552;MQ=60.00;MQRankSum=0;QD=3.97;ReadPosRankSum=1.3;SOR=1.426;VarDP=32 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,418 0/1:23,9:32:99:.:127,0,649:14,9,7,2 +chrX 1450799 . A G 1186 . AC=2;AF=0.667;AN=3;AS_AltDP=31;AS_QD=29.87;DP=85;ExcessHet=0.0000;FS=0.000;MQ=58.59;QD=39.23;SOR=0.756;VarDP=31 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:34:6:34:.:.:0,6 1|1:0,31:31:93:.:0|1:1450799_A_G:1216,93,0:1450799:0,0,15,16 +chrX 1450818 . C G 643 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=29.26;BaseQRankSum=-0.921;DP=79;ExcessHet=0.0000;FS=9.881;MQ=60.00;MQRankSum=0;QD=29.26;ReadPosRankSum=2.071;SOR=1.872;VarDP=23 GT:AD:DP:GQ:MIN_DP:PL:SB 1:4,19:23:99:.:673,0:1,3,14,5 0/0:.:47:0:47:0,0,138 +chrX 1450828 . C G 1934 . AC=3;AF=1.00;AN=3;AS_AltDP=50;AS_QD=26.99;BaseQRankSum=2.711;DP=82;ExcessHet=0.0000;FS=2.603;MQ=59.35;MQRankSum=0;QD=37.06;ReadPosRankSum=-0.076;SOR=1.242;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:3,22:25:99:.:.:817,0:.:1,2,17,5 1|1:0,28:28:84:0|1:1450799_A_G:1147,84,0:1450799:0,0,15,13 +chrX 1451067 . A C 122 . AC=1;AF=0.333;AN=3;AS_AltDP=6;AS_QD=9.50;BaseQRankSum=-1.382;DP=85;ExcessHet=0.0000;FS=9.249;MQ=56.45;MQRankSum=-2.782;QD=9.50;ReadPosRankSum=1.579;SOR=2.225;VarDP=16 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:49:99:49:0,140 0/1:10,6:16:99:.:152,0,293:3,7,5,1 +chrX 1451175 . TAGGGGGTCCTGGGACACTCCTCCCTCCCCATCCCTA T 851.97 . AC=3;AF=1.00;AN=3;AS_AltDP=23;AS_QD=29.86;DP=56;ExcessHet=0.0000;FS=0.000;MQ=59.41;QD=17.13;SOR=1.426;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:876,0:0,0,8,15 1/1:0,0:0:7:15,7,0:0,0,0,0 +chrX 1451620 . C T 394 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=11.46;BaseQRankSum=-0.879;DP=96;ExcessHet=0.0000;FS=0.000;MQ=59.85;MQRankSum=0.976;QD=11.46;ReadPosRankSum=1.205;SOR=0.879;VarDP=37 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:58:99:58:0,790 0/1:20,17:37:99:.:424,0,535:12,8,11,6 +chrX 1451683 . C T 1837 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=23.34;BaseQRankSum=2.258;DP=83;ExcessHet=0.0000;FS=5.620;MQ=59.98;MQRankSum=0;QD=23.34;ReadPosRankSum=0.587;SOR=0.531;VarDP=80 GT:AD:DP:GQ:PL:SB 1:1,45:46:99:1414,0:1,0,20,25 0/1:16,18:34:99:453,0,382:10,6,9,9 +chrX 1451751 . G A 1744 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=23.65;BaseQRankSum=2.09;DP=81;ExcessHet=0.0000;FS=11.011;MQ=58.30;MQRankSum=2.894;QD=23.65;ReadPosRankSum=1.158;SOR=1.031;VarDP=75 GT:AD:DP:GQ:PL:SB 1:1,48:49:99:1489,0:1,0,20,28 0/1:14,12:26:99:285,0,315:9,5,3,9 +chrX 1452221 . C T 590 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=12.92;BaseQRankSum=-0.663;DP=107;ExcessHet=0.0000;FS=1.143;MQ=59.46;MQRankSum=1.084;QD=12.92;ReadPosRankSum=-0.341;SOR=1.024;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:58:45:58:0,45 0/1:23,25:48:99:.:620,0,581:13,10,16,9 +chrX 1453145 . CT C 685.97 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=14.80;BaseQRankSum=-0.55;DP=111;ExcessHet=0.0000;FS=6.542;MQ=59.55;MQRankSum=-0.088;QD=14.80;ReadPosRankSum=-1.353;SOR=0.165;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:58:45:58:0,45 0/1:26,23:49:99:.:725,0,903:6,20,10,13 +chrX 1453409 . G A 495 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=11.67;BaseQRankSum=-1.098;DP=112;ExcessHet=0.0000;FS=8.763;MQ=60.00;MQRankSum=0;QD=11.67;ReadPosRankSum=2.072;SOR=0.150;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:58:45:58:0,45 0/1:24,21:45:99:.:525,0,678:6,18,10,11 +chrX 1454039 . G T 84 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=4.22;BaseQRankSum=0.797;DP=50;ExcessHet=0.0000;FS=1.576;MQ=60.00;MQRankSum=0;QD=4.22;ReadPosRankSum=-0.317;SOR=0.430;VarDP=27 GT:AD:DP:GQ:MIN_DP:PL:SB 1:12,15:27:99:.:114,0:9,3,10,5 0/0:.:25:31:20:0,31,567 +chrX 1454922 . A G 4081 . AC=3;AF=1.00;AN=3;AS_AltDP=130;AS_QD=31.62;DP=134;ExcessHet=0.0000;FS=0.000;MQ=59.96;QD=31.62;SOR=0.929;VarDP=130 GT:AD:DP:GQ:PL:SB 1:0,60:60:99:1932,0:0,0,39,21 1/1:0,70:70:99:2179,208,0:0,0,33,37 +chrX 1454969 . C T 896 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=13.62;BaseQRankSum=-0.903;DP=145;ExcessHet=0.0000;FS=1.973;MQ=59.72;MQRankSum=0.084;QD=13.62;ReadPosRankSum=-0.018;SOR=0.487;VarDP=68 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:69:99:69:0,1699 0/1:33,35:68:99:.:926,0,903:14,19,17,18 +chrX 1455591 . T C 869 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=15.24;BaseQRankSum=0.338;DP=130;ExcessHet=0.0000;FS=5.188;MQ=60.00;MQRankSum=0;QD=15.24;ReadPosRankSum=-0.71;SOR=1.099;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:69:99:69:0,1699 0/1:26,33:59:99:.:899,0,656:14,12,13,20 +chrX 1456048 . A G 4136 . AC=3;AF=1.00;AN=3;AS_AltDP=132;AS_QD=31.32;BaseQRankSum=-0.561;DP=136;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=31.32;ReadPosRankSum=-1.163;SOR=0.306;VarDP=133 GT:AD:DP:GQ:PL:SB 1:1,72:73:99:2262,0:1,0,43,29 1/1:0,60:60:99:1904,179,0:0,0,29,31 +chrX 1456286 . C CTT,CTTT 2231.97 . AC=1,2;AF=0.333,0.667;AN=3;AS_AltDP=33,30;AS_QD=34.77,28.94;DP=107;ExcessHet=0.0000;FS=0.000;MQ=59.70;QD=36.05;SOR=0.724;VarDP=63 GT:AD:DP:GQ:PL:SB 2:0,12,15:27:17:977,17,0:0,0,16,11 1/2:0,21,15:36:99:1294,316,190,427,0,315:0,0,16,20 +chrX 1456392 . T C 2798 . AC=3;AF=1.00;AN=3;AS_AltDP=86;AS_QD=32.88;DP=90;ExcessHet=0.0000;FS=0.000;MQ=59.84;QD=32.88;SOR=1.005;VarDP=86 GT:AD:DP:GQ:PL:SB 1:0,48:48:99:1582,0:0,0,21,27 1/1:0,38:38:99:1246,114,0:0,0,16,22 +chrX 1456520 . G A 717 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=14.37;BaseQRankSum=0.059;DP=122;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.37;ReadPosRankSum=1.338;SOR=0.678;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:54:66:0,54 0/1:25,27:52:99:.:747,0,693:14,11,15,12 +chrX 1456689 . C G 3128 . AC=2;AF=0.667;AN=3;AS_AltDP=107;AS_QD=23.39;BaseQRankSum=-0.114;DP=136;ExcessHet=0.0000;FS=1.739;MQ=59.29;MQRankSum=0.905;QD=23.39;ReadPosRankSum=0.814;SOR=0.936;VarDP=135 GT:AD:DP:GQ:PL:SB 1:0,68:68:99:2108,0:0,0,39,29 0/1:28,39:67:99:1050,0,697:15,13,24,15 +chrX 1456769 . G A 3643 . AC=3;AF=1.00;AN=3;AS_AltDP=112;AS_QD=32.79;DP=115;ExcessHet=0.0000;FS=0.000;MQ=59.23;QD=32.79;SOR=0.729;VarDP=112 GT:AD:DP:GQ:PL:SB 1:0,58:58:99:1881,0:0,0,22,36 1/1:0,54:54:99:1792,162,0:0,0,33,21 +chrX 1457426 . A G 737 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=15.34;BaseQRankSum=-1.018;DP=116;ExcessHet=0.0000;FS=2.790;MQ=60.00;MQRankSum=0;QD=15.34;ReadPosRankSum=-1.003;SOR=0.379;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,1359 0/1:21,29:50:99:.:767,0,546:17,4,21,8 +chrX 1458084 . A G 2370 . AC=2;AF=0.667;AN=3;AS_AltDP=85;AS_QD=21.43;BaseQRankSum=-1.061;DP=118;ExcessHet=0.0000;FS=13.046;MQ=59.04;MQRankSum=1.317;QD=21.43;ReadPosRankSum=-0.415;SOR=0.300;VarDP=112 GT:AD:DP:GQ:PL:SB 1:0,61:61:99:1858,0:0,0,27,34 0/1:27,24:51:99:542,0,731:19,8,14,10 +chrX 1458110 . C CTATG 748.97 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=17.13;BaseQRankSum=-0.441;DP=113;ExcessHet=0.0000;FS=2.687;MQ=59.36;MQRankSum=0;QD=17.13;ReadPosRankSum=-2.167;SOR=1.195;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:58:99:58:0,1647 0/1:24,22:46:99:.:788,0,932:15,9,16,6 +chrX 1458189 . A AATCT 4068.97 . AC=3;AF=1.00;AN=3;AS_AltDP=96;AS_QD=32.53;BaseQRankSum=1.93;DP=109;ExcessHet=0.0000;FS=2.148;MQ=59.99;MQRankSum=-0.16;QD=41.49;ReadPosRankSum=-0.779;SOR=0.484;VarDP=99 GT:AD:DP:GQ:PL:SB 1:0,44:44:99:1947,0:0,0,21,23 1/1:3,52:55:49:2161,49,0:2,1,25,27 +chrX 1458526 . T C 2356 . AC=2;AF=0.667;AN=3;AS_AltDP=85;AS_QD=20.05;BaseQRankSum=-1.252;DP=125;ExcessHet=0.0000;FS=13.809;MQ=60.00;MQRankSum=0;QD=20.05;ReadPosRankSum=-1.198;SOR=0.763;VarDP=119 GT:AD:DP:GQ:PL:SB 1:0,58:58:99:1750,0:0,0,27,31 0/1:34,27:61:99:636,0,960:22,12,9,18 +chrX 1458580 . CATCTATCT C,CATCT 1410.97 . AC=0,2;AF=0.00,0.667;AN=3;AS_AltDP=17,37;AS_QD=13.70,24.17;BaseQRankSum=1.263;DP=120;ExcessHet=0.0000;FS=10.967;MQ=59.98;MQRankSum=0.754;QD=18.83;ReadPosRankSum=0.921;SOR=0.865;VarDP=77 GT:AD:DP:GQ:PL:SB 2:0,17,26:43:99:1056,508,0:0,0,17,26 0/2:23,0,11:34:99:394,463,1429,0,966,932:15,8,5,6 +chrX 1459184 . CATCTATCCATTTATCCATCATCTATATATTAATTT C 621.97 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=10.17;BaseQRankSum=0.576;DP=131;ExcessHet=0.0000;FS=1.028;MQ=59.89;MQRankSum=0;QD=10.17;ReadPosRankSum=0.525;SOR=0.721;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,1507 0/1:46,19:65:99:.:661,0,1873:22,24,10,9 +chrX 1459326 . CATCT C,CATCTATCT 1336.97 . AC=0,2;AF=0.00,0.667;AN=3;AS_AltDP=11,35;AS_QD=12.81,24.57;BaseQRankSum=0.314;DP=102;ExcessHet=0.0000;FS=1.036;MQ=59.95;MQRankSum=0;QD=20.54;ReadPosRankSum=-0.993;SOR=0.972;VarDP=67 GT:AD:DP:GQ:PL:SB 2:0,11,22:33:99:920,510,0:0,0,11,22 0/2:21,0,13:34:99:456,520,1375,0,855,816:9,12,6,7 +chrX 1459615 . C CATCT 3317.97 . AC=2;AF=0.667;AN=3;AS_AltDP=79;AS_QD=32.91;BaseQRankSum=0.562;DP=113;ExcessHet=0.0000;FS=4.656;MQ=60.00;MQRankSum=0;QD=32.91;ReadPosRankSum=-1.328;SOR=0.313;VarDP=102 GT:AD:DP:GQ:PL:SB 1:0,59:59:99:2603,0:0,0,29,30 0/1:23,20:43:99:754,0,881:15,8,12,8 +chrX 1460609 . T A 2499 . AC=2;AF=0.667;AN=3;AS_AltDP=78;AS_QD=24.32;BaseQRankSum=-1.807;DP=107;ExcessHet=0.0000;FS=1.865;MQ=59.77;MQRankSum=0;QD=24.32;ReadPosRankSum=0.092;SOR=0.446;VarDP=104 GT:AD:DP:GQ:PL:SB 1:0,52:52:99:1910,0:0,0,29,23 0/1:26,26:52:99:619,0,713:11,15,10,16 +chrX 1460971 . C T 387 . AC=1;AF=0.333;AN=3;AS_AltDP=40;AS_QD=6.04;BaseQRankSum=1.284;DP=128;ExcessHet=0.0000;FS=1.981;MQ=60.00;MQRankSum=0;QD=6.04;ReadPosRankSum=1.435;SOR=0.489;VarDP=69 GT:AD:DP:GQ:MIN_DP:PL:SB 1:29,40:69:99:.:417,0:17,12,21,19 0/0:.:58:41:58:0,41,1325 +chrX 1461160 . A AC 550.97 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=22.69;DP=74;ExcessHet=0.0000;FS=0.000;MQ=59.90;QD=22.69;SOR=1.220;VarDP=26 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,26:26:99:.:590,0:0,0,16,10 0/0:.:45:0:45:0,0,1027 +chrX 1461244 . G A 2642 . AC=2;AF=0.667;AN=3;AS_AltDP=65;AS_QD=30.02;BaseQRankSum=-0.219;DP=89;ExcessHet=0.0000;FS=3.202;MQ=59.95;MQRankSum=0;QD=30.02;ReadPosRankSum=-1.036;SOR=0.814;VarDP=89 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,46:46:99:.:.:1998,0:.:0,0,24,22 0|1:24,19:43:99:0|1:1461244_G_A:674,0,929:1461244:13,11,5,14 +chrX 1461251 . C T 2537 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=29.85;BaseQRankSum=-0.399;DP=90;ExcessHet=0.0000;FS=1.986;MQ=59.95;MQRankSum=0;QD=29.85;ReadPosRankSum=-1.578;SOR=0.703;VarDP=86 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,43:43:99:.:.:1893,0:.:0,0,23,20 0|1:24,19:43:99:0|1:1461244_G_A:674,0,929:1461244:13,11,6,13 +chrX 1461666 . A G 2726 . AC=2;AF=0.667;AN=3;AS_AltDP=89;AS_QD=23.56;BaseQRankSum=0.136;DP=125;ExcessHet=0.0000;FS=8.974;MQ=59.21;MQRankSum=-0.589;QD=23.56;ReadPosRankSum=-0.424;SOR=1.071;VarDP=117 GT:AD:DP:GQ:PL:SB 1:0,63:63:99:2080,0:0,0,24,39 0/1:28,26:54:99:676,0,751:16,12,11,15 +chrX 1461849 . C A 3018 . AC=2;AF=0.667;AN=3;AS_AltDP=71;AS_QD=32.43;BaseQRankSum=-1.541;DP=96;ExcessHet=0.0000;FS=8.307;MQ=57.22;MQRankSum=-1.924;QD=32.43;ReadPosRankSum=2.086;SOR=0.546;VarDP=94 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,49:49:99:.:.:2205,0:.:0,0,26,23 0|1:23,22:45:99:0|1:1461849_C_A:843,0,878:1461849:8,15,11,8 +chrX 1461851 . C CTAATATA 3275.97 . AC=2;AF=0.667;AN=3;AS_AltDP=77;AS_QD=32.82;BaseQRankSum=0.521;DP=102;ExcessHet=0.0000;FS=6.200;MQ=57.17;MQRankSum=-1.966;QD=32.82;ReadPosRankSum=1.792;SOR=0.567;VarDP=101 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,55:55:99:.:.:2475,0:.:0,0,29,26 0|1:24,22:46:99:0|1:1461849_C_A:840,0,920:1461849:9,15,11,8 +chrX 1461854 . T TA 3230.97 . AC=2;AF=0.667;AN=3;AS_AltDP=76;AS_QD=32.70;BaseQRankSum=-0.105;DP=101;ExcessHet=0.0000;FS=7.859;MQ=57.15;MQRankSum=-1.966;QD=32.70;ReadPosRankSum=0.602;SOR=0.612;VarDP=100 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,54:54:99:.:.:2430,0:.:0,0,29,25 0|1:24,22:46:99:0|1:1461849_C_A:840,0,932:1461849:9,15,11,8 +chrX 1461865 . A G 3224 . AC=2;AF=0.667;AN=3;AS_AltDP=76;AS_QD=32.22;BaseQRankSum=-0.476;DP=109;ExcessHet=0.0000;FS=7.652;MQ=57.06;MQRankSum=-1.378;QD=32.22;ReadPosRankSum=0.047;SOR=0.764;VarDP=101 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,57:57:99:.:.:2565,0:.:0,0,32,25 0|1:25,19:44:99:0|1:1461849_C_A:689,0,993:1461849:10,15,11,8 +chrX 1461866 . A ATC 649.97 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=15.66;BaseQRankSum=-0.903;DP=106;ExcessHet=0.0000;FS=4.420;MQ=58.29;MQRankSum=-1.378;QD=15.66;ReadPosRankSum=-0.083;SOR=0.811;VarDP=44 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:54:99:54:.:.:0,1485 0|1:25,19:44:99:.:0|1:1461849_C_A:689,0,993:1461849:10,15,11,8 +chrX 1461868 . A C,ATCATCTGTC 2560 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=22,37;AS_QD=32.58,28.14;BaseQRankSum=-1.742;DP=112;ExcessHet=0.0000;FS=10.390;MQ=57.06;MQRankSum=-1.378;QD=30.83;ReadPosRankSum=-0.415;SOR=1.164;VarDP=84 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,22,18:40:99:.:.:1900,0,178:.:0,0,26,14 0|2:25,0,19:44:99:0|1:1461849_C_A:690,765,1816,0,1050,993:1461849:10,15,11,8 +chrX 1461872 . CT C 217.97 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=5.98;BaseQRankSum=1.62;DP=107;ExcessHet=0.0000;FS=4.714;MQ=55.95;MQRankSum=1.519;QD=5.98;ReadPosRankSum=0.558;SOR=1.564;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 1:18,25:43:99:.:257,0:10,8,18,7 0/0:.:47:99:47:0,120,1800 +chrX 1461874 . A ATCTGT,AT,ACTAT 4100.97 . AC=1,1,1;AF=0.333,0.333,0.333;AN=3;AS_AltDP=25,35,24;AS_QD=30.37,29.88,32.54;DP=117;ExcessHet=0.0000;FS=0.000;MQ=56.90;QD=49.29;SOR=0.954;VarDP=84 GT:AD:DP:GQ:PL:SB 1:0,25,18,0:43:99:1900,0,257,1478:0,0,28,15 2/3:0,0,17,24:41:99:2240,2015,2039,1035,1107,1082,733,741,0,622:0,0,19,22 +chrX 1461880 . TG T 3071.97 . AC=2;AF=0.667;AN=3;AS_AltDP=72;AS_QD=31.42;BaseQRankSum=-2.619;DP=112;ExcessHet=0.0000;FS=13.633;MQ=56.61;MQRankSum=-1.67;QD=31.42;ReadPosRankSum=-1.477;SOR=1.261;VarDP=99 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,56:56:99:.:.:2520,0:.:0,0,35,21 0|1:27,16:43:99:0|1:1461849_C_A:591,0,1085:1461849:11,16,11,5 +chrX 1461888 . C CT,CATCTGTCTATCTATCTATCTATCTATCT 2987.97 . AC=2,0;AF=0.667,0.00;AN=3;AS_AltDP=70,0;AS_QD=32.90,0.00;BaseQRankSum=-2.389;DP=112;ExcessHet=0.0000;FS=13.262;MQ=56.61;MQRankSum=-1.521;QD=32.90;ReadPosRankSum=-2.273;SOR=1.144;VarDP=92 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:2469,0,2469:0,0,34,21 0/1:22,15,0:37:99:558,0,962,670,962,2212:8,14,10,5 +chrX 1461931 . GATCT G 2559.97 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=32.09;BaseQRankSum=-3.386;DP=113;ExcessHet=0.0000;FS=11.472;MQ=55.04;MQRankSum=-4.574;QD=32.09;ReadPosRankSum=-1.256;SOR=1.482;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,58:58:99:2594,0:0,0,38,20 0/1:21,2:23:5:5,0,865:9,12,2,0 +chrX 1462012 . ACTATCTACCTATCTATCTAATCTATCTACTATCTATCTATCTAATCTATCTACTATCTATCTAATCTATCTACTATCTATCTACTATCTAATCTATCCACTCTCTATCTACCTATCTAATCTATCTACTATCTATCTATCTAATCTATCTACTAT A 596.97 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=31.62;DP=54;ExcessHet=0.0000;FS=0.000;MQ=52.75;QD=37.41;SOR=0.804;VarDP=17 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,17:17:99:.:636,0:0,0,8,9 0/0:.:36:37:36:0,37,900 +chrX 1462040 . ACTAT *,A,ACTATCTAT 365.97 . AC=1,0,2;AF=0.333,0.00,0.667;AN=3;AS_AltDP=0,0,9;AS_QD=29.55,29.62,32.70;DP=31;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=45.00;SOR=0.693;VarDP=9 GT:AD:DP:GQ:PL:SB 1:0,17,0,0:17:99:636,0,636,636:0,0,8,9 3/3:0,0,0,9:9:27:405,411,442,411,447,478,27,33,33,0:0,0,5,4 +chrX 1462215 . A ACTAT,ACTATCTATCTATCTAATCTATCTACTATCTATCTATCTACTATCTAATCTATCTACTCTCTATCTACCTATCTAATCTATCTACTATCTATCTATCTAATCTATCTACTATCTATCTACCTATCTAATCTATCTACTATCTATCTAATCTATCTACTAT 2745.97 . AC=2,0;AF=0.667,0.00;AN=3;AS_AltDP=60,0;AS_QD=23.68,28.18;BaseQRankSum=1.772;DP=121;ExcessHet=0.0000;FS=0.000;MQ=55.28;MQRankSum=1.37;QD=45.66;ReadPosRankSum=0.206;SOR=0.351;VarDP=61 GT:AD:DP:GQ:PL:SB 1:1,42,0:43:99:1832,0,1890:1,0,24,18 0/1:0,18,0:18:10:953,0,763,728,10,1034:0,0,10,8 +chrX 1462258 . A ACTAT,AATCTATCTACTATCTATCTACCTATCTAATCTATCTACTAT 3048.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=46,8;AS_QD=25.35,30.11;BaseQRankSum=-0.973;DP=108;ExcessHet=0.0000;FS=0.994;MQ=55.03;MQRankSum=-4.251;QD=38.12;ReadPosRankSum=-2.92;SOR=0.487;VarDP=81 GT:AD:DP:GQ:PL:SB 1:1,46,0:47:99:2034,0,1625:0,0,15,12 0/2:26,0,8:34:99:1054,298,1377,0,1017,1049:15,11,3,5 +chrX 1462274 . ACTAT A 1679.97 . AC=1;AF=0.333;AN=3;AS_AltDP=39;AS_QD=28.96;DP=101;ExcessHet=0.0000;FS=0.000;MQ=53.62;QD=42.98;SOR=1.127;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,39:40:99:.:1719,0:0,0,12,8 0/0:.:57:93:57:0,93,1395 +chrX 1462293 . A AATCTATCTACTATCCATCT 191.97 . AC=1;AF=0.500;AN=2;AS_AltDP=8;AS_QD=7.00;BaseQRankSum=0.379;DP=106;ExcessHet=0.0000;FS=6.237;MQ=57.21;MQRankSum=-4.175;QD=7.00;ReadPosRankSum=2.96;SOR=0.954;VarDP=33 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB .:.:39:0:39:.:.:0,0 0|1:25,8:33:99:.:0|1:1462244_C_CTAT:231,0,1052:1462244:16,9,3,5 +chrX 1462302 . A ACTAT 1632.97 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=30.20;DP=106;ExcessHet=0.0000;FS=0.000;MQ=54.44;QD=42.87;SOR=1.179;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,38:39:99:.:1672,0:0,0,11,7 0/0:.:65:78:65:0,78,1170 +chrX 1462321 . T TACTATCTATCTATCTAATCTATCTACTATCTATCTATCTAA 173.97 . AC=1;AF=0.333;AN=3;AS_AltDP=7;AS_QD=8.52;BaseQRankSum=0.052;DP=104;ExcessHet=0.0000;FS=1.721;MQ=57.22;MQRankSum=-3.855;QD=8.52;ReadPosRankSum=-3.372;SOR=0.803;VarDP=25 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:41:99:41:.:.:0,1147 0|1:18,7:25:99:.:0|1:1462244_C_CTAT:213,0,767:1462244:10,8,3,4 +chrX 1462341 . G A 2220 . AC=1;AF=0.333;AN=3;AS_AltDP=50;AS_QD=32.47;DP=103;ExcessHet=0.0000;FS=0.000;MQ=58.17;QD=45.00;SOR=1.390;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,50:50:99:.:2250,0:0,0,18,32 0/0:.:54:32:52:0,32,887 +chrX 1462345 . GTCTA G 2210.97 . AC=1;AF=0.333;AN=3;AS_AltDP=50;AS_QD=35.16;DP=103;ExcessHet=0.0000;FS=0.000;MQ=58.52;QD=45.00;SOR=1.390;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,50:50:99:.:2250,0:0,0,18,32 0/0:.:54:32:52:0,32,887 +chrX 1462357 . GTCTA ATCTA,G 3035 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=50,21;AS_QD=26.39,33.64;DP=107;ExcessHet=0.0000;FS=0.000;MQ=59.08;QD=43.17;SOR=1.195;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,50,0:50:99:2231,0,2231:0,0,16,34 1/2:0,0,21:21:51:834,807,824,51,0,1319:0,0,12,9 +chrX 1462371 . C G,CTATG 3427 . AC=2,0;AF=0.667,0.00;AN=3;AS_AltDP=51,0;AS_QD=31.23,31.44;BaseQRankSum=2.67;DP=109;ExcessHet=0.0000;FS=11.187;MQ=59.51;MQRankSum=-0.165;QD=46.72;ReadPosRankSum=1.529;SOR=1.481;VarDP=74 GT:AD:DP:GQ:PL:SB 1:1,51,0:52:99:2242,0,2250:0,1,17,34 0/1:22,0,0:22:51:1215,0,830,51,854,881:13,9,0,0 +chrX 1462598 . GT G 1930.97 . AC=2;AF=0.667;AN=3;AS_AltDP=70;AS_QD=21.89;BaseQRankSum=-1.414;DP=102;ExcessHet=0.0000;FS=0.970;MQ=60.00;MQRankSum=0;QD=21.89;ReadPosRankSum=-0.203;SOR=0.941;VarDP=90 GT:AD:DP:GQ:PL:SB 1:0,50:50:99:1492,0:0,0,26,24 0/1:20,20:40:99:478,0,456:10,10,5,15 +chrX 1462977 . CA C,CAAA 1222.97 . AC=2,0;AF=0.667,0.00;AN=3;AS_AltDP=57,17;AS_QD=15.58,1.05;BaseQRankSum=1.67;DP=118;ExcessHet=0.0000;FS=3.186;MQ=60.00;MQRankSum=0;QD=12.88;ReadPosRankSum=-0.97;SOR=1.134;VarDP=98 GT:AD:DP:GQ:PL:SB 1:0,33,17:50:99:740,0,697:0,0,25,25 0/1:24,24,0:48:99:522,0,497,594,569,1164:12,12,19,5 +chrX 1464550 . C G 583 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=11.15;BaseQRankSum=-0.01;DP=127;ExcessHet=0.0000;FS=7.639;MQ=60.00;MQRankSum=0;QD=11.15;ReadPosRankSum=-0.262;SOR=1.564;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:70:99:70:0,432 0/1:30,25:55:99:.:613,0,746:14,16,17,8 +chrX 1464647 . G C 3001 . AC=2;AF=0.667;AN=3;AS_AltDP=102;AS_QD=22.96;BaseQRankSum=-1.269;DP=135;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=22.96;ReadPosRankSum=-1.741;SOR=0.703;VarDP=132 GT:AD:DP:GQ:PL:SB 1:0,65:65:99:2073,0:0,0,27,38 0/1:30,37:67:99:958,0,792:12,18,14,23 +chrX 1465033 . G A 206 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=4.29;BaseQRankSum=1.972;DP=116;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=4.29;ReadPosRankSum=0.533;SOR=0.746;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 1:25,30:55:99:.:236,0:12,13,14,16 0/0:.:58:84:58:0,84,1514 +chrX 1465276 . T C 863 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=17.17;BaseQRankSum=-2.025;DP=121;ExcessHet=0.0000;FS=4.058;MQ=60.00;MQRankSum=0;QD=17.17;ReadPosRankSum=-0.32;SOR=0.734;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,1002 0/1:20,32:52:99:.:893,0,528:12,8,14,18 +chrX 1466607 . T C 4384 . AC=3;AF=1.00;AN=3;AS_AltDP=140;AS_QD=31.53;DP=144;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.53;SOR=0.722;VarDP=140 GT:AD:DP:GQ:PL:SB 1:0,62:62:99:1974,0:0,0,32,30 1/1:0,78:78:99:2440,233,0:0,0,39,39 +chrX 1466710 . T TCCTC 896.97 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=22.29;BaseQRankSum=-1.044;DP=125;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=22.29;ReadPosRankSum=-0.699;SOR=0.657;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,1240 0/1:18,24:42:99:.:936,0,673:5,13,7,17 +chrX 1466864 . CTCCT C 2336.97 . AC=3;AF=1.00;AN=3;AS_AltDP=63;AS_QD=34.43;BaseQRankSum=1.374;DP=110;ExcessHet=0.0000;FS=23.051;MQ=59.61;MQRankSum=0;QD=34.43;ReadPosRankSum=-0.277;SOR=0.948;VarDP=69 GT:AD:DP:GQ:PL:SB 1:4,32:36:99:1196,0:4,0,10,22 1/1:2,31:33:70:1180,70,0:2,0,14,17 +chrX 1466951 . C T 1385 . AC=2;AF=0.667;AN=3;AS_AltDP=41;AS_QD=34.51;DP=82;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=34.51;SOR=2.476;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:40:34:39:0,34 1/1:0,41:41:99:.:1415,123,0:0,0,9,32 +chrX 1466968 . C G 92 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=2.71;BaseQRankSum=0.197;DP=90;ExcessHet=0.0000;FS=4.824;MQ=60.00;MQRankSum=0;QD=2.71;ReadPosRankSum=-0.458;SOR=0.243;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 1:21,24:45:99:.:122,0:4,17,8,16 0/0:.:45:99:45:0,117,1589 +chrX 1466984 . T TG 1389.97 . AC=2;AF=0.667;AN=3;AS_AltDP=44;AS_QD=32.48;DP=102;ExcessHet=0.0000;FS=0.000;MQ=59.79;QD=32.48;SOR=1.230;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:53:34:50:0,34 1/1:0,44:44:99:.:1429,132,0:0,0,17,27 +chrX 1467036 . G GACTC 2255.97 . AC=3;AF=1.00;AN=3;AS_AltDP=74;AS_QD=23.66;BaseQRankSum=-0.253;DP=101;ExcessHet=0.0000;FS=0.906;MQ=60.00;MQRankSum=0;QD=23.66;ReadPosRankSum=-0.019;SOR=0.522;VarDP=97 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:23,28:51:99:.:.:225,0:.:10,13,13,15 1|1:0,46:46:99:0|1:1467036_G_GACTC:2070,138,0:1467036:0,0,23,23 +chrX 1467051 . G T 2549 . AC=3;AF=1.00;AN=3;AS_AltDP=84;AS_QD=23.45;BaseQRankSum=1.589;DP=111;ExcessHet=0.0000;FS=0.827;MQ=60.00;MQRankSum=0;QD=23.45;ReadPosRankSum=-1.163;SOR=0.601;VarDP=110 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:26,31:57:99:.:.:225,0:.:12,14,16,15 1|1:0,53:53:99:0|1:1467036_G_GACTC:2354,160,0:1467036:0,0,25,28 +chrX 1467056 . C T 2458 . AC=3;AF=1.00;AN=3;AS_AltDP=84;AS_QD=22.21;BaseQRankSum=1.821;DP=114;ExcessHet=0.0000;FS=1.786;MQ=60.00;MQRankSum=0;QD=22.21;ReadPosRankSum=-0.689;SOR=0.460;VarDP=112 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:28,30:58:99:.:.:110,0:.:12,16,15,15 1|1:0,54:54:99:0|1:1467036_G_GACTC:2378,163,0:1467036:0,0,27,27 +chrX 1467408 . G A 2983 . AC=2;AF=0.667;AN=3;AS_AltDP=97;AS_QD=22.83;BaseQRankSum=1.326;DP=139;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=22.83;ReadPosRankSum=-0.842;SOR=0.742;VarDP=132 GT:AD:DP:GQ:PL:SB 1:0,66:66:99:2233,0:0,0,38,28 0/1:35,31:66:99:780,0,813:21,14,21,10 +chrX 1467533 . G C 1985 . AC=3;AF=1.00;AN=3;AS_AltDP=94;AS_QD=15.74;BaseQRankSum=2.109;DP=134;ExcessHet=0.0000;FS=0.744;MQ=60.00;MQRankSum=0;QD=15.74;ReadPosRankSum=-0.905;SOR=0.588;VarDP=128 GT:AD:DP:GQ:PL:SB 1:34,36:70:99:119,0:18,16,16,20 1/1:0,58:58:99:1896,174,0:0,0,31,27 +chrX 1467971 . G A 516 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=11.38;BaseQRankSum=0.898;DP=122;ExcessHet=0.0000;FS=1.163;MQ=60.00;MQRankSum=0;QD=11.38;ReadPosRankSum=0.301;SOR=1.012;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:72:71:72:0,71 0/1:27,21:48:99:.:546,0,699:11,16,7,14 +chrX 1468319 . G A 3157 . AC=2;AF=0.667;AN=3;AS_AltDP=100;AS_QD=25.50;BaseQRankSum=1.569;DP=125;ExcessHet=0.0000;FS=4.314;MQ=60.00;MQRankSum=0;QD=25.50;ReadPosRankSum=-1.265;SOR=1.066;VarDP=125 GT:AD:DP:GQ:PL:SB 1:0,58:58:99:1960,0:0,0,32,26 0/1:25,42:67:99:1227,0,617:12,13,27,15 +chrX 1468759 . C T 289 . AC=1;AF=1.00;AN=1;AS_AltDP=8;AS_QD=27.53;DP=27;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=39.88;SOR=1.863;VarDP=8 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,8:8:99:.:319,0:0,0,2,6 ./.:.:17:0:17:0,0,0 +chrX 1468778 . T TC 140.97 . AC=1;AF=1.00;AN=1;AS_AltDP=4;AS_QD=28.06;DP=10;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=45.00;SOR=3.258;VarDP=4 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,4:4:99:.:180,0:0,0,0,4 ./.:.:5:0:5:0,0,0 +chrX 1468786 . C T 105 . AC=1;AF=1.00;AN=1;AS_AltDP=3;AS_QD=26.78;DP=8;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=45.00;SOR=2.833;VarDP=3 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,3:3:99:.:135,0:0,0,0,3 ./.:.:5:0:5:0,0,0 +chrX 1469781 . C A 623 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=6.40;BaseQRankSum=-0.279;DP=106;ExcessHet=0.0000;FS=5.024;MQ=60.00;MQRankSum=0;QD=6.40;ReadPosRankSum=1.785;SOR=0.331;VarDP=102 GT:AD:DP:GQ:PL:SB 1:26,26:52:5:5,0:18,8,10,16 0/1:25,25:50:99:648,0,664:15,10,17,8 +chrX 1470053 . A C 703 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=11.63;BaseQRankSum=0.2;DP=125;ExcessHet=0.0000;FS=2.094;MQ=60.00;MQRankSum=0;QD=11.63;ReadPosRankSum=0.414;SOR=0.575;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:99:60:0,1030 0/1:34,29:63:99:.:733,0,888:19,15,14,15 +chrX 1470202 . T TAAAC 670.97 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=22.19;BaseQRankSum=-1.297;DP=105;ExcessHet=0.0000;FS=1.340;MQ=58.67;MQRankSum=-2.324;QD=22.19;ReadPosRankSum=-0.741;SOR=0.473;VarDP=32 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:99:60:0,1030 0/1:14,18:32:99:.:710,0,534:6,8,9,9 +chrX 1470310 . A G 688 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=11.40;BaseQRankSum=-1.975;DP=124;ExcessHet=0.0000;FS=3.442;MQ=55.95;MQRankSum=-4.58;QD=11.40;ReadPosRankSum=-1.872;SOR=0.860;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:99:60:0,1030 0/1:33,30:63:99:.:718,0,908:15,18,17,13 +chrX 1471162 . C T 667 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=12.91;BaseQRankSum=1.244;DP=116;ExcessHet=0.0000;FS=2.277;MQ=60.00;MQRankSum=0;QD=12.91;ReadPosRankSum=0.573;SOR=1.051;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:99:60:0,1030 0/1:29,25:54:99:.:697,0,805:15,14,15,10 +chrX 1471309 . A ATT,ATTT,T 1247 . AC=0,1,1;AF=0.00,0.333,0.333;AN=3;AS_AltDP=8,13,22;AS_QD=21.93,20.22,15.37;BaseQRankSum=-1.932;DP=94;ExcessHet=0.0000;FS=5.851;MQ=58.32;MQRankSum=-1.904;QD=20.60;ReadPosRankSum=2.329;SOR=0.223;VarDP=62 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 2:0,8,13,0:21:55:.:.:647,55,0,434:.:0,0,7,14 0|3:19,0,0,22:41:99:0|1:1471309_A_T:630,685,1253,685,1253,1253,0,568,568,503:1471309:5,14,12,10 +chrX 1471331 . TGTAA T 370.97 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=10.79;BaseQRankSum=-0.181;DP=85;ExcessHet=0.0000;FS=2.984;MQ=58.00;MQRankSum=-2.06;QD=10.79;ReadPosRankSum=-0.552;SOR=0.784;VarDP=38 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:45:99:45:.:.:0,403 0|1:24,14:38:99:.:0|1:1471309_A_T:410,0,771:1471309:10,14,8,6 +chrX 1471413 . C T 373 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=8.76;BaseQRankSum=0.724;DP=93;ExcessHet=0.0000;FS=6.329;MQ=60.00;MQRankSum=0;QD=8.76;ReadPosRankSum=-0.934;SOR=1.286;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:45:99:45:0,403 0/1:29,17:46:99:.:403,0,730:16,13,6,11 +chrX 1471465 . AT A 469.97 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=13.05;BaseQRankSum=-1.014;DP=91;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.05;ReadPosRankSum=-0.329;SOR=0.776;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:45:99:45:0,403 0/1:16,23:39:99:.:509,0,307:8,8,12,11 +chrX 1471554 . G A 877 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=9.16;BaseQRankSum=1.238;DP=108;ExcessHet=0.0000;FS=4.990;MQ=59.53;MQRankSum=0;QD=9.16;ReadPosRankSum=1.584;SOR=0.800;VarDP=99 GT:AD:DP:GQ:PL:SB 1:21,31:52:99:358,0:9,12,15,16 0/1:26,21:47:99:549,0,658:12,14,14,7 +chrX 1471764 . A G 713 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=14.29;BaseQRankSum=-0.455;DP=104;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.29;ReadPosRankSum=0.359;SOR=0.781;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:52:45:52:0,45 0/1:23,29:52:99:.:743,0,600:10,13,12,17 +chrX 1471940 . C T 725 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=14.25;BaseQRankSum=1.591;DP=108;ExcessHet=0.0000;FS=5.608;MQ=60.00;MQRankSum=0;QD=14.25;ReadPosRankSum=0.33;SOR=0.781;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:52:45:52:0,45 0/1:25,28:53:99:.:755,0,580:15,10,12,16 +chrX 1472111 . C T 743 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=14.05;BaseQRankSum=-0.08;DP=109;ExcessHet=0.0000;FS=2.276;MQ=60.00;MQRankSum=0;QD=14.05;ReadPosRankSum=1.18;SOR=1.059;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:52:45:52:0,45 0/1:26,29:55:99:.:773,0,678:14,12,18,11 +chrX 1472263 . C T 1046 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=21.10;BaseQRankSum=0.205;DP=116;ExcessHet=0.0000;FS=5.731;MQ=60.00;MQRankSum=0;QD=21.10;ReadPosRankSum=2.366;SOR=0.254;VarDP=51 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:52:45:52:.:.:0,45 0|1:23,28:51:99:.:0|1:1472263_C_T:1076,0,829:1472263:7,16,13,15 +chrX 1472276 . AAG A 1121.97 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=22.76;BaseQRankSum=-0.619;DP=114;ExcessHet=0.0000;FS=4.016;MQ=60.00;MQRankSum=0;QD=22.76;ReadPosRankSum=0.448;SOR=0.311;VarDP=51 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:52:45:52:.:.:0,45 0|1:21,30:51:99:.:0|1:1472263_C_T:1161,0,773:1472263:7,14,14,16 +chrX 1472314 . A G 823 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=17.41;BaseQRankSum=-0.88;DP=114;ExcessHet=0.0000;FS=1.142;MQ=60.00;MQRankSum=0;QD=17.41;ReadPosRankSum=-2.135;SOR=0.486;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:52:45:52:0,45 0/1:19,30:49:99:.:853,0,500:7,12,13,17 +chrX 1472356 . A G 637 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=15.16;BaseQRankSum=-1.268;DP=111;ExcessHet=0.0000;FS=0.000;MQ=59.27;MQRankSum=-0.826;QD=15.16;ReadPosRankSum=1.055;SOR=0.784;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:52:45:52:0,45 0/1:19,25:44:99:.:667,0,493:8,11,10,15 +chrX 1472454 . G A 267 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=14.85;BaseQRankSum=0.146;DP=82;ExcessHet=0.0000;FS=1.848;MQ=60.00;MQRankSum=0;QD=14.85;ReadPosRankSum=-2.74;SOR=1.180;VarDP=20 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:52:45:52:0,45 0/1:9,11:20:99:.:297,0,243:5,4,4,7 +chrX 1472602 . TTTAGA T 215.97 . AC=1;AF=0.333;AN=3;AS_AltDP=7;AS_QD=12.75;BaseQRankSum=0.2;DP=76;ExcessHet=0.0000;FS=0.000;MQ=59.51;MQRankSum=-1.258;QD=12.75;ReadPosRankSum=2.072;SOR=0.527;VarDP=20 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:52:45:52:0,45 0/1:13,7:20:99:.:255,0,525:5,8,3,4 +chrX 1472694 . GGGAGGGTGGATGTGTGGATGAAT G 126.97 . AC=1;AF=0.333;AN=3;AS_AltDP=6;AS_QD=6.64;BaseQRankSum=0.961;DP=88;ExcessHet=0.0000;FS=1.958;MQ=60.00;MQRankSum=0;QD=6.64;ReadPosRankSum=-0.627;SOR=1.179;VarDP=25 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:52:45:52:.:.:0,45 0|1:19,6:25:99:.:0|1:1472694_GGGAGGGTGGATGTGTGGATGAAT_G:166,0,678:1472694:13,6,5,1 +chrX 1472728 . T A 130 . AC=1;AF=0.333;AN=3;AS_AltDP=5;AS_QD=10.67;BaseQRankSum=1.035;DP=80;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=10.67;ReadPosRankSum=0.245;SOR=0.941;VarDP=15 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:52:45:52:.:.:0,45 0|1:10,5:15:99:.:0|1:1472694_GGGAGGGTGGATGTGTGGATGAAT_G:160,0,384:1472694:7,3,4,1 +chrX 1472858 . A G 328 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=9.94;BaseQRankSum=-1.281;DP=93;ExcessHet=0.0000;FS=4.748;MQ=59.34;MQRankSum=-0.16;QD=9.94;ReadPosRankSum=0.685;SOR=1.152;VarDP=36 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:52:45:52:0,45 0/1:20,16:36:99:.:358,0,547:11,9,6,10 +chrX 1472933 . C T 357 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=13.82;BaseQRankSum=-0.165;DP=85;ExcessHet=0.0000;FS=1.750;MQ=60.00;MQRankSum=0;QD=13.82;ReadPosRankSum=-0.165;SOR=0.352;VarDP=28 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:52:45:52:0,45 0/1:11,17:28:99:.:387,0,268:9,2,12,5 +chrX 1472981 . T C 65 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=5.00;BaseQRankSum=0.31;DP=62;ExcessHet=0.0000;FS=0.000;MQ=58.94;MQRankSum=-0.746;QD=5.00;ReadPosRankSum=-1.405;SOR=0.527;VarDP=19 GT:AD:DP:GQ:MIN_DP:PL:SB 1:8,11:19:95:.:95,0:7,1,9,2 0/0:.:38:0:38:0,0,709 +chrX 1473133 . G GTGGA 624.97 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=18.44;BaseQRankSum=0.456;DP=84;ExcessHet=0.0000;FS=0.000;MQ=58.89;MQRankSum=1.056;QD=18.44;ReadPosRankSum=-0.443;SOR=0.914;VarDP=36 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:40:99:40:0,352 0/1:18,18:36:99:.:664,0,652:9,9,10,8 +chrX 1473377 . GTGGGTGGGTGGA G 438.97 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=23.90;BaseQRankSum=0.396;DP=70;ExcessHet=0.0000;FS=4.285;MQ=60.00;MQRankSum=0;QD=23.90;ReadPosRankSum=1.268;SOR=0.169;VarDP=20 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:40:99:40:0,352 0/1:8,12:20:99:.:478,0,248:6,2,6,6 +chrX 1473389 . A *,G 727 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=12,7;AS_QD=0.00,34.75;BaseQRankSum=-0.157;DP=66;ExcessHet=0.0000;FS=3.979;MQ=60.00;MQRankSum=0;QD=37.85;ReadPosRankSum=1.562;SOR=1.061;VarDP=20 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:40:99:40:0,352,352 1/2:1,12,7:20:99:.:757,232,247,505,0,479:0,1,12,7 +chrX 1473438 . T C 302 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=13.28;BaseQRankSum=0;DP=67;ExcessHet=0.0000;FS=3.831;MQ=60.00;MQRankSum=0;QD=13.28;ReadPosRankSum=-0.904;SOR=0.180;VarDP=25 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:40:99:40:0,352 0/1:11,14:25:99:.:332,0,239:8,3,7,7 +chrX 1473525 . GTGGA G 520.97 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=20.00;BaseQRankSum=-0.027;DP=72;ExcessHet=0.0000;FS=5.969;MQ=58.99;MQRankSum=0.312;QD=20.00;ReadPosRankSum=0.232;SOR=0.148;VarDP=28 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:40:99:40:0,352 0/1:12,16:28:99:.:560,0,445:3,9,8,8 +chrX 1473596 . G GTGGATTGATGGATCAGTGTTTAGATAGGTGGATGTGTGGGTGGATGAATGGA 236.97 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=7.46;BaseQRankSum=-1.058;DP=109;ExcessHet=0.0000;FS=1.400;MQ=56.09;MQRankSum=-3.036;QD=7.46;ReadPosRankSum=-1.247;SOR=0.382;VarDP=37 GT:AD:DP:GQ:MIN_DP:PL:SB 1:14,23:37:99:.:276,0:10,4,14,9 0/0:.:52:99:52:0,105,1429 +chrX 1473713 . T A 454 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=15.13;BaseQRankSum=0.111;DP=92;ExcessHet=0.0000;FS=5.366;MQ=59.80;MQRankSum=-0.877;QD=15.13;ReadPosRankSum=-1.077;SOR=0.194;VarDP=32 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,516 0/1:15,17:32:99:.:484,0,361:11,4,9,8 +chrX 1473815 . AGTGGGTGG A 631.97 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=15.60;BaseQRankSum=-0.558;DP=105;ExcessHet=0.0000;FS=2.600;MQ=58.52;MQRankSum=-0.92;QD=15.60;ReadPosRankSum=1.057;SOR=0.387;VarDP=43 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:59:99:59:.:.:0,516 0|1:25,18:43:99:.:0|1:1473815_AGTGGGTGG_A:671,0,995:1473815:15,10,9,9 +chrX 1473843 . G C 754 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=15.68;BaseQRankSum=-1.032;DP=110;ExcessHet=0.0000;FS=0.000;MQ=58.99;MQRankSum=-0.907;QD=15.68;ReadPosRankSum=-1.042;SOR=0.632;VarDP=50 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:59:99:59:.:.:0,516 0|1:29,21:50:99:.:0|1:1473815_AGTGGGTGG_A:784,0,1154:1473815:17,12,12,9 +chrX 1473870 . A G 653 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=13.94;BaseQRankSum=-0.714;DP=111;ExcessHet=0.0000;FS=0.000;MQ=59.01;MQRankSum=-0.954;QD=13.94;ReadPosRankSum=-0.19;SOR=0.560;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,516 0/1:29,20:49:99:.:683,0,800:17,12,11,9 +chrX 1473875 . G A 668 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=13.42;BaseQRankSum=-1.276;DP=112;ExcessHet=0.0000;FS=0.000;MQ=59.02;MQRankSum=-1.129;QD=13.42;ReadPosRankSum=-0.628;SOR=0.582;VarDP=52 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:59:99:59:.:.:0,516 0|1:33,19:52:99:.:0|1:1473815_AGTGGGTGG_A:698,0,1328:1473815:20,13,11,8 +chrX 1473909 . T G 581 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=10.02;BaseQRankSum=0.683;DP=121;ExcessHet=0.0000;FS=2.519;MQ=58.03;MQRankSum=0.31;QD=10.02;ReadPosRankSum=0.686;SOR=0.381;VarDP=61 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:59:99:59:.:.:0,516 0|1:42,19:61:99:.:0|1:1473815_AGTGGGTGG_A:611,0,1546:1473815:30,12,12,7 +chrX 1473984 . C T 839 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=20.69;BaseQRankSum=-0.163;DP=108;ExcessHet=0.0000;FS=10.157;MQ=58.63;MQRankSum=-0.03;QD=20.69;ReadPosRankSum=0.44;SOR=1.472;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,516 0/1:14,28:42:99:.:869,0,305:9,5,9,19 +chrX 1473998 . A G 311 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=7.58;BaseQRankSum=-1.221;DP=111;ExcessHet=0.0000;FS=4.546;MQ=58.21;MQRankSum=-1.705;QD=7.58;ReadPosRankSum=-0.296;SOR=1.508;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,516 0/1:29,16:45:99:.:341,0,964:14,15,5,11 +chrX 1474035 . G A 378 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=9.27;BaseQRankSum=1.198;DP=106;ExcessHet=0.0000;FS=1.413;MQ=57.85;MQRankSum=-1.413;QD=9.27;ReadPosRankSum=2.307;SOR=1.051;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,516 0/1:32,12:44:99:.:408,0,1168:11,21,3,9 +chrX 1474044 . T C 414 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=9.45;BaseQRankSum=1.042;DP=108;ExcessHet=0.0000;FS=3.061;MQ=57.86;MQRankSum=-1.997;QD=9.45;ReadPosRankSum=2.234;SOR=1.402;VarDP=47 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:59:99:59:.:.:0,516 0|1:34,13:47:99:.:0|1:1474044_T_C:444,0,1388:1474044:13,21,3,10 +chrX 1474045 . G T 414 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=9.45;BaseQRankSum=1.092;DP=108;ExcessHet=0.0000;FS=3.061;MQ=57.86;MQRankSum=-1.997;QD=9.45;ReadPosRankSum=1.796;SOR=1.402;VarDP=47 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:59:99:59:.:.:0,516 0|1:34,13:47:99:.:0|1:1474044_T_C:444,0,1388:1474044:13,21,3,10 +chrX 1474051 . C T 475 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=10.74;BaseQRankSum=1.802;DP=109;ExcessHet=0.0000;FS=7.153;MQ=57.91;MQRankSum=-2.487;QD=10.74;ReadPosRankSum=2.009;SOR=2.026;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,516 0/1:32,15:47:99:.:505,0,863:14,18,3,12 +chrX 1474053 . G A 408 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=8.94;BaseQRankSum=0.519;DP=110;ExcessHet=0.0000;FS=4.924;MQ=57.95;MQRankSum=-2.084;QD=8.94;ReadPosRankSum=1.989;SOR=1.609;VarDP=49 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:59:99:59:.:.:0,516 0|1:36,13:49:99:.:0|1:1474044_T_C:438,0,1451:1474044:15,21,3,10 +chrX 1474093 . T G 241 . AC=1;AF=0.333;AN=3;AS_AltDP=9;AS_QD=6.61;BaseQRankSum=1.539;DP=100;ExcessHet=0.0000;FS=5.573;MQ=56.94;MQRankSum=-1.691;QD=6.61;ReadPosRankSum=-0.898;SOR=1.304;VarDP=41 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:59:99:59:.:.:0,516 0|1:32,9:41:99:.:0|1:1474093_T_G:271,0,1317:1474093:18,14,3,6 +chrX 1474097 . G A 238 . AC=1;AF=0.333;AN=3;AS_AltDP=9;AS_QD=6.38;BaseQRankSum=-0.256;DP=101;ExcessHet=0.0000;FS=5.707;MQ=57.02;MQRankSum=-1.738;QD=6.38;ReadPosRankSum=-0.576;SOR=1.288;VarDP=42 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:59:99:59:.:.:0,516 0|1:33,9:42:99:.:0|1:1474093_T_G:268,0,1359:1474093:19,14,3,6 +chrX 1474101 . A C 204 . AC=1;AF=0.333;AN=3;AS_AltDP=8;AS_QD=5.57;BaseQRankSum=-1.275;DP=101;ExcessHet=0.0000;FS=9.102;MQ=57.02;MQRankSum=-1.974;QD=5.57;ReadPosRankSum=-0.938;SOR=1.784;VarDP=42 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:59:99:59:.:.:0,516 0|1:34,8:42:99:.:0|1:1474093_T_G:234,0,1404:1474093:20,14,2,6 +chrX 1474109 . G A 243 . AC=1;AF=0.333;AN=3;AS_AltDP=9;AS_QD=6.20;BaseQRankSum=-1.886;DP=103;ExcessHet=0.0000;FS=11.925;MQ=56.76;MQRankSum=-2.491;QD=6.20;ReadPosRankSum=-2.016;SOR=2.025;VarDP=44 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:59:99:59:.:.:0,516 0|1:35,9:44:99:.:0|1:1474093_T_G:273,0,1443:1474093:21,14,2,7 +chrX 1474119 . T C 228 . AC=1;AF=0.333;AN=3;AS_AltDP=9;AS_QD=5.27;BaseQRankSum=0.23;DP=108;ExcessHet=0.0000;FS=11.911;MQ=56.74;MQRankSum=-2.448;QD=5.27;ReadPosRankSum=-1.863;SOR=2.025;VarDP=49 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:59:99:59:.:.:0,516 0|1:40,9:49:99:.:0|1:1474093_T_G:258,0,1653:1474093:24,16,2,7 +chrX 1474136 . G T 128 . AC=1;AF=0.333;AN=3;AS_AltDP=7;AS_QD=3.04;BaseQRankSum=-0.66;DP=111;ExcessHet=0.0000;FS=13.375;MQ=57.38;MQRankSum=-2.373;QD=3.04;ReadPosRankSum=-1.404;SOR=2.549;VarDP=52 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:59:99:59:.:.:0,516 0|1:45,7:52:99:.:0|1:1474093_T_G:158,0,1868:1474093:26,19,1,6 +chrX 1474140 . G C 125 . AC=1;AF=0.333;AN=3;AS_AltDP=7;AS_QD=2.92;BaseQRankSum=-0.441;DP=112;ExcessHet=0.0000;FS=13.668;MQ=56.93;MQRankSum=-3.333;QD=2.92;ReadPosRankSum=-1.143;SOR=2.546;VarDP=53 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:59:99:59:.:.:0,516 0|1:46,7:53:99:.:0|1:1474093_T_G:155,0,1910:1474093:27,19,1,6 +chrX 1474166 . G A 861 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=20.25;BaseQRankSum=0.443;DP=104;ExcessHet=0.0000;FS=2.675;MQ=58.68;MQRankSum=-1.518;QD=20.25;ReadPosRankSum=1.482;SOR=1.179;VarDP=44 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:59:99:59:.:.:0,516 0|1:19,25:44:99:.:0|1:1474166_G_A:891,0,702:1474166:11,8,17,8 +chrX 1474178 . G T 930 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=21.82;BaseQRankSum=-0.597;DP=105;ExcessHet=0.0000;FS=4.762;MQ=58.71;MQRankSum=-1.379;QD=21.82;ReadPosRankSum=1.574;SOR=1.536;VarDP=44 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:59:99:59:.:.:0,516 0|1:17,27:44:99:.:0|1:1474166_G_A:960,0,633:1474166:10,7,20,7 +chrX 1474371 . ATAAGTGGGTGGG A 35.97 . AC=1;AF=0.333;AN=3;AS_AltDP=3;AS_QD=3.75;BaseQRankSum=1.128;DP=79;ExcessHet=0.0000;FS=0.000;MQ=53.95;MQRankSum=-1.242;QD=3.75;ReadPosRankSum=-2.066;SOR=0.784;VarDP=20 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,516 0/1:17,3:20:75:.:75,0,705:7,10,1,2 +chrX 1474510 . A G 123 . AC=1;AF=0.333;AN=3;AS_AltDP=7;AS_QD=6.95;BaseQRankSum=0.767;DP=85;ExcessHet=0.0000;FS=7.829;MQ=55.72;MQRankSum=0.118;QD=6.95;ReadPosRankSum=-2.045;SOR=2.568;VarDP=22 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,516 0/1:15,7:22:99:.:153,0,388:8,7,1,6 +chrX 1474556 . GTGGATGGA G,GTGGA 580.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=9,13;AS_QD=20.64,24.87;BaseQRankSum=-0.454;DP=91;ExcessHet=0.0000;FS=3.171;MQ=57.92;MQRankSum=-0.151;QD=25.83;ReadPosRankSum=-0.052;SOR=0.105;VarDP=24 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,516,516 1/2:2,9,13:24:99:.:620,393,638,247,0,360:2,0,11,11 +chrX 1475157 . T G 624 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=17.68;BaseQRankSum=2.019;DP=98;ExcessHet=0.0000;FS=0.000;MQ=58.17;MQRankSum=-0.773;QD=17.68;ReadPosRankSum=-0.335;SOR=0.619;VarDP=37 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:59:99:59:.:.:0,516 0|1:20,17:37:99:.:0|1:1475157_T_G:654,0,751:1475157:11,9,9,8 +chrX 1475159 . A G 624 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=17.68;BaseQRankSum=0.998;DP=97;ExcessHet=0.0000;FS=0.000;MQ=58.12;MQRankSum=-0.773;QD=17.68;ReadPosRankSum=-0.381;SOR=0.619;VarDP=37 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:59:99:59:.:.:0,516 0|1:20,17:37:99:.:0|1:1475157_T_G:654,0,751:1475157:11,9,9,8 +chrX 1475359 . G A 795 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=14.73;BaseQRankSum=0.321;DP=117;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.73;ReadPosRankSum=-0.271;SOR=0.826;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,516 0/1:26,30:56:99:.:825,0,671:13,13,14,16 +chrX 1475713 . T A 995 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=15.30;BaseQRankSum=-0.08;DP=128;ExcessHet=0.0000;FS=4.778;MQ=60.00;MQRankSum=0;QD=15.30;ReadPosRankSum=0.618;SOR=1.046;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,516 0/1:30,37:67:99:.:1025,0,767:16,14,15,22 +chrX 1475809 . A C 749 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=12.77;BaseQRankSum=-1.7;DP=122;ExcessHet=0.0000;FS=0.975;MQ=60.00;MQRankSum=0;QD=12.77;ReadPosRankSum=0.253;SOR=0.529;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,516 0/1:31,30:61:99:.:779,0,863:18,13,16,14 +chrX 1476512 . C G 3180 . AC=3;AF=1.00;AN=3;AS_AltDP=103;AS_QD=31.17;DP=107;ExcessHet=0.0000;FS=0.000;MQ=59.78;QD=31.17;SOR=0.880;VarDP=103 GT:AD:DP:GQ:PL:SB 1:0,52:52:99:1561,0:0,0,28,24 1/1:0,51:51:99:1649,153,0:0,0,28,23 +chrX 1476592 . GA G,AA 407 . AC=1,0;AF=0.333,0.00;AN=3;AS_AltDP=20,3;AS_QD=10.66,0.00;BaseQRankSum=1.521;DP=118;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=9.93;ReadPosRankSum=-0.317;SOR=0.641;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,436,436 0/1:21,20,3:44:99:.:437,0,461,485,408,1394:7,14,8,15 +chrX 1476631 . T A 592 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=10.54;BaseQRankSum=-1.243;DP=125;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=10.54;ReadPosRankSum=-0.1;SOR=0.657;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,436 0/1:34,25:59:99:.:622,0,971:16,18,12,13 +chrX 1477198 . A AG 761.97 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=14.30;BaseQRankSum=0.67;DP=135;ExcessHet=0.0000;FS=9.998;MQ=59.76;MQRankSum=0.841;QD=14.30;ReadPosRankSum=2.786;SOR=1.158;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,436 0/1:34,22:56:99:.:801,0,1196:21,13,8,14 +chrX 1477199 . A AAG,AAAGAAG 1117.97 . AC=1,0;AF=0.333,0.00;AN=3;AS_AltDP=22,0;AS_QD=25.15,10.83;BaseQRankSum=-0.985;DP=135;ExcessHet=0.0000;FS=8.105;MQ=59.76;MQRankSum=0;QD=25.15;ReadPosRankSum=2.146;SOR=1.199;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,436,436 0/1:24,22,0:46:99:.:1157,0,1172,897,982,2009:14,10,8,14 +chrX 1477298 . T TCAATCATCTATCAATCAGA 1078.97 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=20.33;BaseQRankSum=-1.374;DP=124;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=20.33;ReadPosRankSum=-0.632;SOR=0.618;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,436 0/1:26,29:55:99:.:1118,0,995:14,12,15,14 +chrX 1477448 . T A 642 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=11.39;BaseQRankSum=1.569;DP=127;ExcessHet=0.0000;FS=1.008;MQ=60.00;MQRankSum=0;QD=11.39;ReadPosRankSum=0.545;SOR=0.941;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,436 0/1:34,25:59:99:.:672,0,924:17,17,14,11 +chrX 1477539 . C T 991 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=14.80;BaseQRankSum=-0.678;DP=138;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.80;ReadPosRankSum=1.214;SOR=0.648;VarDP=69 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:65:99:65:.:.:0,436 0|1:41,28:69:99:.:0|1:1477539_C_T:1021,0,1597:1477539:20,21,14,14 +chrX 1477550 . A ATCG 1050.97 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=16.03;BaseQRankSum=-2.68;DP=137;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=16.03;ReadPosRankSum=1.737;SOR=0.614;VarDP=68 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:65:99:65:.:.:0,436 0|1:39,29:68:99:.:0|1:1477539_C_T:1090,0,1550:1477539:18,21,14,15 +chrX 1477972 . C T 1302 . AC=1;AF=0.333;AN=3;AS_AltDP=47;AS_QD=18.00;BaseQRankSum=0.306;DP=143;ExcessHet=0.0000;FS=0.913;MQ=60.00;MQRankSum=0;QD=18.00;ReadPosRankSum=0.545;SOR=0.560;VarDP=74 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,436 0/1:27,47:74:99:.:1332,0,636:16,11,26,21 +chrX 1478050 . G A 821 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=13.73;BaseQRankSum=-2.532;DP=129;ExcessHet=0.0000;FS=2.146;MQ=60.00;MQRankSum=0;QD=13.73;ReadPosRankSum=0.481;SOR=0.845;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,436 0/1:28,34:62:99:.:851,0,760:13,15,19,15 +chrX 1478249 . A G 679 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=14.77;BaseQRankSum=-0.888;DP=115;ExcessHet=0.0000;FS=4.047;MQ=59.14;MQRankSum=-2.068;QD=14.77;ReadPosRankSum=0.241;SOR=1.048;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,436 0/1:28,20:48:99:.:709,0,1056:15,13,8,12 +chrX 1478273 . G GCA,GTGTGTGTGTGTGTGTGTGCA 492.97 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=0,11;AS_QD=2.57,13.64;BaseQRankSum=1.339;DP=113;ExcessHet=0.0000;FS=7.663;MQ=59.10;MQRankSum=-2.803;QD=13.64;ReadPosRankSum=-0.219;SOR=1.763;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,436,436 0/2:28,0,11:39:99:.:532,460,1731,0,1138,1177:15,13,3,8 +chrX 1478375 . G A 688 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=11.40;BaseQRankSum=-1.125;DP=129;ExcessHet=0.0000;FS=2.102;MQ=60.00;MQRankSum=0;QD=11.40;ReadPosRankSum=-0.324;SOR=0.452;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,436 0/1:33,30:63:99:.:718,0,867:13,20,14,16 +chrX 1478473 . T TTTTA 638.97 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=16.95;BaseQRankSum=-0.688;DP=111;ExcessHet=0.0000;FS=1.260;MQ=60.00;MQRankSum=0;QD=16.95;ReadPosRankSum=0.449;SOR=0.430;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,436 0/1:22,18:40:99:.:678,0,843:8,14,8,10 +chrX 1478548 . G A 631 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=5.65;BaseQRankSum=1.786;DP=123;ExcessHet=0.0000;FS=10.133;MQ=60.00;MQRankSum=0;QD=5.65;ReadPosRankSum=-0.34;SOR=0.529;VarDP=117 GT:AD:DP:GQ:PL:SB 1:32,32:64:25:25,0:20,12,16,16 0/1:29,24:53:99:636,0,709:18,11,10,14 +chrX 1478606 . A G 867 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=16.31;BaseQRankSum=0.186;DP=123;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=16.31;ReadPosRankSum=0.905;SOR=0.688;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,1629 0/1:23,32:55:99:.:897,0,594:13,10,18,14 +chrX 1478675 . C T 846 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=14.85;BaseQRankSum=1.266;DP=126;ExcessHet=0.0000;FS=7.248;MQ=59.89;MQRankSum=-0.885;QD=14.85;ReadPosRankSum=1.202;SOR=0.433;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,1629 0/1:27,32:59:99:.:876,0,686:18,9,15,17 +chrX 1478770 . T G 668 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=10.74;BaseQRankSum=-1.146;DP=135;ExcessHet=0.0000;FS=6.789;MQ=59.90;MQRankSum=-1.083;QD=10.74;ReadPosRankSum=-0.673;SOR=1.415;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,1629 0/1:36,29:65:99:.:698,0,976:19,17,10,19 +chrX 1478792 . T C 586 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=9.63;BaseQRankSum=-0.845;DP=133;ExcessHet=0.0000;FS=6.842;MQ=60.00;MQRankSum=0;QD=9.63;ReadPosRankSum=0.172;SOR=1.532;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,1629 0/1:39,25:64:99:.:616,0,1103:19,20,8,17 +chrX 1478828 . A G 542 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=10.59;BaseQRankSum=-1.249;DP=122;ExcessHet=0.0000;FS=5.471;MQ=60.00;MQRankSum=0;QD=10.59;ReadPosRankSum=-0.271;SOR=1.080;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,1629 0/1:31,23:54:99:.:572,0,884:17,14,9,14 +chrX 1478856 . A G 501 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=10.02;BaseQRankSum=-0.013;DP=120;ExcessHet=0.0000;FS=7.971;MQ=60.00;MQRankSum=0;QD=10.02;ReadPosRankSum=0.992;SOR=1.420;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,1629 0/1:32,21:53:99:.:531,0,892:18,14,7,14 +chrX 1478898 . T C 705 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=10.97;BaseQRankSum=-0.835;DP=136;ExcessHet=0.0000;FS=0.958;MQ=60.00;MQRankSum=0;QD=10.97;ReadPosRankSum=0.817;SOR=0.525;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,1629 0/1:38,29:67:99:.:735,0,1089:24,14,17,12 +chrX 1479395 . A G 837 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=11.56;BaseQRankSum=0.086;DP=145;ExcessHet=0.0000;FS=6.494;MQ=60.00;MQRankSum=0;QD=11.56;ReadPosRankSum=0.623;SOR=0.258;VarDP=75 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,1629 0/1:41,34:75:99:.:867,0,1121:11,30,14,20 +chrX 1479705 . C G 812 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=15.59;BaseQRankSum=-0.341;DP=123;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=15.59;ReadPosRankSum=-0.665;SOR=0.636;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,1629 0/1:23,31:54:99:.:842,0,608:10,13,14,17 +chrX 1480296 . CT C 493.97 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=15.68;BaseQRankSum=0.701;DP=119;ExcessHet=0.0000;FS=2.928;MQ=60.00;MQRankSum=0;QD=15.68;ReadPosRankSum=-0.155;SOR=1.244;VarDP=34 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:67:99:67:.:.:0,1629 0|1:18,16:34:99:.:0|1:1480296_CT_C:533,0,643:1480296:9,9,10,6 +chrX 1480318 . G A 610 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=17.78;BaseQRankSum=3.015;DP=104;ExcessHet=0.0000;FS=3.012;MQ=60.00;MQRankSum=0;QD=17.78;ReadPosRankSum=-0.661;SOR=1.493;VarDP=36 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:67:99:67:.:.:0,1629 0|1:18,18:36:99:.:0|1:1480296_CT_C:640,0,644:1480296:9,9,12,6 +chrX 1480383 . C T 686 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=15.57;BaseQRankSum=2.468;DP=115;ExcessHet=0.0000;FS=2.678;MQ=60.00;MQRankSum=0;QD=15.57;ReadPosRankSum=0.321;SOR=1.276;VarDP=46 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:67:99:67:.:.:0,1629 0|1:26,20:46:99:.:0|1:1480383_C_T:716,0,1022:1480383:15,11,14,6 +chrX 1480393 . GTTT GTTTT,G 758.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=27,20;AS_QD=0.86,9.16;BaseQRankSum=1.336;DP=114;ExcessHet=0.0000;FS=7.628;MQ=59.85;MQRankSum=0;QD=7.53;ReadPosRankSum=0.997;SOR=1.364;VarDP=106 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:24,27,0:51:74:.:.:74,0,702:.:11,13,16,11 0|2:35,0,20:55:99:0|1:1480383_C_T:724,830,2279,0,1449,1389:1480383:20,15,15,5 +chrX 1480420 . T G 687 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=13.28;BaseQRankSum=0.599;DP=116;ExcessHet=0.0000;FS=4.079;MQ=60.00;MQRankSum=0;QD=13.28;ReadPosRankSum=-0.251;SOR=1.371;VarDP=54 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:59:99:59:.:.:0,1413 0|1:34,20:54:99:.:0|1:1480383_C_T:717,0,1315:1480383:19,15,14,6 +chrX 1480446 . A G 556 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=10.10;BaseQRankSum=0.394;DP=120;ExcessHet=0.0000;FS=2.224;MQ=60.00;MQRankSum=0;QD=10.10;ReadPosRankSum=-1.169;SOR=1.051;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,1413 0/1:34,24:58:99:.:586,0,878:17,17,14,10 +chrX 1480516 . TA T 857.97 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=14.47;BaseQRankSum=1.083;DP=125;ExcessHet=0.0000;FS=2.070;MQ=59.91;MQRankSum=-1.034;QD=14.47;ReadPosRankSum=0.466;SOR=0.861;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,1413 0/1:33,29:62:99:.:897,0,1042:17,16,13,16 +chrX 1480687 . A G 577 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=12.91;BaseQRankSum=-3.069;DP=108;ExcessHet=0.0000;FS=6.639;MQ=59.90;MQRankSum=-0.895;QD=12.91;ReadPosRankSum=-1.141;SOR=0.160;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,1413 0/1:22,25:47:99:.:607,0,624:5,17,11,14 +chrX 1480752 . C A 880 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=8.27;BaseQRankSum=0.697;DP=112;ExcessHet=0.0000;FS=11.127;MQ=59.96;MQRankSum=0;QD=8.27;ReadPosRankSum=1.813;SOR=0.217;VarDP=110 GT:AD:DP:GQ:PL:SB 1:27,34:61:99:237,0:8,19,13,21 0/1:23,26:49:99:673,0,567:6,17,14,12 +chrX 1480905 . G GA 426.97 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=8.79;BaseQRankSum=-0.899;DP=121;ExcessHet=0.0000;FS=2.357;MQ=60.00;MQRankSum=0;QD=8.79;ReadPosRankSum=1.365;SOR=1.069;VarDP=53 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:66:99:66:.:.:0,1800 0|1:30,23:53:99:.:0|1:1480905_G_GA:466,0,1191:1480905:17,13,15,8 +chrX 1480916 . A C 1314 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=11.59;BaseQRankSum=-0.308;DP=117;ExcessHet=0.0000;FS=4.688;MQ=60.00;MQRankSum=0;QD=11.59;ReadPosRankSum=-0.817;SOR=0.362;VarDP=116 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:28,30:58:78:.:.:78,0:.:20,8,17,13 0|1:26,32:58:99:1|0:1480905_G_GA:1266,0,960:1480905:16,10,18,14 +chrX 1480917 . A C 1314 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=11.59;BaseQRankSum=-0.366;DP=116;ExcessHet=0.0000;FS=4.688;MQ=60.00;MQRankSum=0;QD=11.59;ReadPosRankSum=-0.833;SOR=0.362;VarDP=116 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:28,30:58:78:.:.:78,0:.:20,8,17,13 0|1:26,32:58:99:1|0:1480905_G_GA:1266,0,960:1480905:16,10,18,14 +chrX 1480942 . G A 1349 . AC=2;AF=0.667;AN=3;AS_AltDP=68;AS_QD=11.03;BaseQRankSum=1.485;DP=126;ExcessHet=0.0000;FS=1.465;MQ=60.00;MQRankSum=0;QD=11.03;ReadPosRankSum=1.172;SOR=0.535;VarDP=125 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:28,35:63:99:.:.:176,0:.:19,9,21,14 0|1:29,33:62:99:1|0:1480905_G_GA:1203,0,936:1480905:17,12,19,14 +chrX 1481171 . A AT 522.97 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=9.69;BaseQRankSum=2.659;DP=130;ExcessHet=0.0000;FS=3.554;MQ=60.00;MQRankSum=0;QD=9.69;ReadPosRankSum=0.584;SOR=1.179;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:99:60:0,1178 0/1:30,28:58:99:.:562,0,619:15,15,17,11 +chrX 1482160 . GGT G 1406.97 . AC=3;AF=1.00;AN=3;AS_AltDP=60;AS_QD=18.78;BaseQRankSum=1.064;DP=96;ExcessHet=0.0000;FS=0.000;MQ=59.83;MQRankSum=-0.941;QD=18.78;ReadPosRankSum=0.603;SOR=0.593;VarDP=77 GT:AD:DP:GQ:PL:SB 1:17,17:34:14:14,0:8,9,10,7 1/1:0,43:43:99:1432,130,0:0,0,20,23 +chrX 1482206 . T TCAA 2020.97 . AC=2;AF=0.667;AN=3;AS_AltDP=46;AS_QD=30.79;DP=76;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.78;SOR=0.780;VarDP=46 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:29:51:27:.:.:0,51 1|1:0,46:46:99:.:0|1:1482206_T_TCAA:2060,138,0:1482206:0,0,22,24 +chrX 1482214 . A T 1995 . AC=2;AF=0.667;AN=3;AS_AltDP=45;AS_QD=32.87;DP=73;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=45.00;SOR=0.737;VarDP=45 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:29:51:27:.:.:0,51 1|1:0,45:45:99:.:0|1:1482206_T_TCAA:2025,135,0:1482206:0,0,22,23 +chrX 1482697 . TAG T 5863.97 . AC=3;AF=1.00;AN=3;AS_AltDP=132;AS_QD=27.38;DP=136;ExcessHet=0.0000;FS=0.000;MQ=59.92;QD=44.72;SOR=0.755;VarDP=132 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,73:73:99:.:.:3256,0:.:0,0,36,37 1|1:0,59:59:99:0|1:1482697_TAG_T:2647,178,0:1482697:0,0,32,27 +chrX 1482700 . T TAC 5863.97 . AC=3;AF=1.00;AN=3;AS_AltDP=132;AS_QD=26.00;DP=135;ExcessHet=0.0000;FS=0.000;MQ=59.92;QD=44.72;SOR=0.755;VarDP=132 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,73:73:99:.:.:3256,0:.:0,0,36,37 1|1:0,59:59:99:0|1:1482697_TAG_T:2647,178,0:1482697:0,0,32,27 +chrX 1482810 . C G 3337 . AC=3;AF=1.00;AN=3;AS_AltDP=101;AS_QD=33.34;DP=105;ExcessHet=0.0000;FS=0.000;MQ=48.54;QD=33.34;SOR=0.713;VarDP=101 GT:AD:DP:GQ:PL:SB 1:0,47:47:99:1592,0:0,0,22,25 1/1:0,54:54:99:1775,161,0:0,0,28,26 +chrX 1482859 . T C 3094 . AC=3;AF=1.00;AN=3;AS_AltDP=98;AS_QD=31.88;DP=99;ExcessHet=0.0000;FS=0.000;MQ=46.80;QD=31.88;SOR=0.914;VarDP=98 GT:AD:DP:GQ:PL:SB 1:0,45:45:99:1417,0:0,0,24,21 1/1:0,53:53:99:1707,158,0:0,0,30,23 +chrX 1482991 . C T 5704 . AC=3;AF=1.00;AN=3;AS_AltDP=135;AS_QD=29.92;DP=135;ExcessHet=0.0000;FS=0.000;MQ=52.90;QD=42.47;SOR=0.801;VarDP=135 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,57:57:99:.:.:2518,0:.:0,0,27,30 1|1:0,78:78:99:0|1:1482991_C_T:3216,234,0:1482991:0,0,44,34 +chrX 1482996 . T C 5705 . AC=3;AF=1.00;AN=3;AS_AltDP=135;AS_QD=26.99;DP=136;ExcessHet=0.0000;FS=0.000;MQ=53.15;QD=42.48;SOR=0.801;VarDP=135 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,57:57:99:.:.:2509,0:.:0,0,27,30 1|1:0,78:78:99:0|1:1482991_C_T:3226,234,0:1482991:0,0,44,34 +chrX 1483088 . G A 4553 . AC=3;AF=1.00;AN=3;AS_AltDP=140;AS_QD=32.74;DP=146;ExcessHet=0.0000;FS=0.000;MQ=57.89;QD=32.74;SOR=0.844;VarDP=140 GT:AD:DP:GQ:PL:SB 1:0,72:72:99:2344,0:0,0,44,28 1/1:0,68:68:99:2239,204,0:0,0,31,37 +chrX 1484492 . T A 2089 . AC=2;AF=1.00;AN=2;AS_AltDP=65;AS_QD=32.60;DP=146;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.60;SOR=1.000;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB .:.:77:0:77:0,0 1/1:0,65:65:99:.:2119,195,0:0,0,28,37 +chrX 1484669 . A T 84 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=2.78;BaseQRankSum=1.125;DP=73;ExcessHet=0.0000;FS=2.709;MQ=59.74;MQRankSum=1.125;QD=2.78;ReadPosRankSum=-0.301;SOR=0.673;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 1:19,22:41:99:.:114,0:11,8,10,12 0/0:.:34:36:31:0,36,630 +chrX 1484724 . T TAAAAA,TAAAAAAA,TAAAAAAAAAAAAAAAA 1068.97 . AC=1,2,0;AF=0.333,0.667,0.00;AN=3;AS_AltDP=16,10,0;AS_QD=30.22,24.62,30.32;BaseQRankSum=-0.385;DP=86;ExcessHet=0.0000;FS=3.033;MQ=56.01;MQRankSum=-0.541;QD=39.57;ReadPosRankSum=1.078;SOR=1.981;VarDP=28 GT:AD:DP:GQ:PL:SB 1:2,16,0,0:18:99:544,0,635,635:1,1,7,9 2/2:0,0,10,0:10:31:564,516,510,37,39,0,458,460,31,452:0,0,0,10 +chrX 1484749 . G *,A 777 . AC=0,2;AF=0.00,0.667;AN=3;AS_AltDP=0,12;AS_QD=29.88,25.49;DP=93;ExcessHet=0.0000;FS=0.000;MQ=55.75;QD=67.25;SOR=3.611;VarDP=12 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:59:99:59:.:.:0,252,252 2|2:0,0,12:12:41:.:0|1:1484749_G_*:807,550,605,60,41,0:1484749:0,0,1,11 +chrX 1484752 . G *,A 834 . AC=0,2;AF=0.00,0.667;AN=3;AS_AltDP=0,13;AS_QD=24.95,34.43;DP=84;ExcessHet=0.0000;FS=0.000;MQ=56.87;QD=66.46;SOR=2.833;VarDP=13 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,252,252 2/2:0,0,13:13:41:.:864,553,605,62,41,0:0,0,2,11 +chrX 1484755 . G *,A 818 . AC=0,2;AF=0.00,0.667;AN=3;AS_AltDP=0,12;AS_QD=26.60,30.24;DP=85;ExcessHet=0.0000;FS=0.000;MQ=56.99;QD=70.67;SOR=3.611;VarDP=12 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:59:99:59:.:.:0,252,252 2|2:0,0,12:12:41:.:0|1:1484749_G_*:848,550,605,60,41,0:1484749:0,0,1,11 +chrX 1484986 . CT C 480.97 . AC=3;AF=1.00;AN=3;AS_AltDP=29;AS_QD=15.76;BaseQRankSum=0.369;DP=113;ExcessHet=0.0000;FS=0.000;MQ=59.46;MQRankSum=0;QD=15.76;ReadPosRankSum=-0.205;SOR=0.392;VarDP=33 GT:AD:DP:GQ:PL:SB 1:2,16:18:99:290,0:0,2,8,8 1/1:2,13:15:20:230,20,0:1,1,4,9 +chrX 1485233 . C G 3915 . AC=3;AF=1.00;AN=3;AS_AltDP=121;AS_QD=32.34;BaseQRankSum=2.587;DP=124;ExcessHet=0.0000;FS=3.382;MQ=59.95;MQRankSum=0;QD=32.34;ReadPosRankSum=0.924;SOR=0.520;VarDP=122 GT:AD:DP:GQ:PL:SB 1:1,59:60:99:1935,0:0,1,40,19 1/1:0,62:62:99:2010,186,0:0,0,26,36 +chrX 1485287 . A G 3553 . AC=3;AF=1.00;AN=3;AS_AltDP=112;AS_QD=31.71;BaseQRankSum=2.137;DP=115;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=31.71;ReadPosRankSum=0.193;SOR=0.253;VarDP=113 GT:AD:DP:GQ:PL:SB 1:1,53:54:99:1677,0:1,0,30,23 1/1:0,59:59:99:1906,177,0:0,0,28,31 +chrX 1485926 . G A 5168 . AC=3;AF=1.00;AN=3;AS_AltDP=160;AS_QD=32.49;DP=165;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.49;SOR=1.003;VarDP=160 GT:AD:DP:GQ:PL:SB 1:0,80:80:99:2578,0:0,0,41,39 1/1:0,80:80:99:2620,240,0:0,0,50,30 +chrX 1485981 . A G 5203 . AC=3;AF=1.00;AN=3;AS_AltDP=158;AS_QD=33.12;DP=165;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.12;SOR=0.884;VarDP=158 GT:AD:DP:GQ:PL:SB 1:0,81:81:99:2674,0:0,0,39,42 1/1:0,77:77:99:2559,231,0:0,0,47,30 +chrX 1486144 . G A 914 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=13.30;BaseQRankSum=-0.256;DP=141;ExcessHet=0.0000;FS=0.000;MQ=59.95;MQRankSum=-0.986;QD=13.30;ReadPosRankSum=0.5;SOR=0.651;VarDP=71 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,336 0/1:36,35:71:99:.:944,0,956:13,23,13,22 +chrX 1486575 . G C 1367 . AC=2;AF=0.667;AN=3;AS_AltDP=76;AS_QD=10.12;BaseQRankSum=-0.011;DP=142;ExcessHet=0.0000;FS=0.000;MQ=59.87;MQRankSum=0;QD=10.12;ReadPosRankSum=0.035;SOR=0.649;VarDP=138 GT:AD:DP:GQ:PL:SB 1:26,37:63:99:381,0:10,16,17,20 0/1:36,39:75:99:1016,0,926:17,19,17,22 +chrX 1486918 . G A 1193 . AC=2;AF=0.667;AN=3;AS_AltDP=68;AS_QD=9.94;BaseQRankSum=2.037;DP=131;ExcessHet=0.0000;FS=0.677;MQ=60.00;MQRankSum=0;QD=9.94;ReadPosRankSum=-0.026;SOR=0.825;VarDP=123 GT:AD:DP:GQ:PL:SB 1:28,41:69:99:477,0:17,11,22,19 0/1:27,27:54:99:746,0,766:12,15,16,11 +chrX 1487118 . C G 4681 . AC=3;AF=1.00;AN=3;AS_AltDP=145;AS_QD=32.49;DP=149;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.49;SOR=0.854;VarDP=145 GT:AD:DP:GQ:PL:SB 1:0,68:68:99:2262,0:0,0,27,41 1/1:0,77:77:99:2449,231,0:0,0,40,37 +chrX 1487350 . G A 986 . AC=2;AF=0.667;AN=3;AS_AltDP=68;AS_QD=8.00;BaseQRankSum=1.589;DP=134;ExcessHet=0.0000;FS=12.858;MQ=60.00;MQRankSum=0;QD=8.00;ReadPosRankSum=0.813;SOR=1.153;VarDP=127 GT:AD:DP:GQ:PL:SB 1:34,39:73:99:220,0:17,17,29,10 0/1:25,29:54:99:796,0,647:9,16,13,16 +chrX 1488257 . C T 3672 . AC=3;AF=1.00;AN=3;AS_AltDP=110;AS_QD=33.65;DP=114;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.65;SOR=0.767;VarDP=110 GT:AD:DP:GQ:PL:SB 1:0,55:55:99:1860,0:0,0,25,30 1/1:0,55:55:99:1842,165,0:0,0,28,27 +chrX 1488733 . GGT G,GGTGT 476.97 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=2,20;AS_QD=0.00,14.74;BaseQRankSum=1.855;DP=108;ExcessHet=0.0000;FS=4.887;MQ=60.00;MQRankSum=0;QD=13.95;ReadPosRankSum=1.516;SOR=0.896;VarDP=37 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:24:56:0,24,24 0/2:15,2,20:37:99:.:516,569,1318,0,376,417:9,6,9,13 +chrX 1488819 . ACACT A 1548.97 . AC=2;AF=0.667;AN=3;AS_AltDP=67;AS_QD=13.02;BaseQRankSum=1.308;DP=126;ExcessHet=0.0000;FS=3.253;MQ=60.00;MQRankSum=0;QD=13.02;ReadPosRankSum=1.046;SOR=0.638;VarDP=122 GT:AD:DP:GQ:PL:SB 1:28,35:63:99:326,0:16,12,18,17 0/1:27,32:59:99:1262,0,1026:14,13,14,18 +chrX 1488878 . T C 4139 . AC=3;AF=1.00;AN=3;AS_AltDP=124;AS_QD=33.62;DP=129;ExcessHet=0.0000;FS=0.000;MQ=59.93;QD=33.62;SOR=0.828;VarDP=124 GT:AD:DP:GQ:PL:SB 1:0,60:60:99:2005,0:0,0,32,28 1/1:0,64:64:99:2164,192,0:0,0,34,30 +chrX 1489093 . C T 769 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=8.59;BaseQRankSum=-0.033;DP=96;ExcessHet=0.0000;FS=0.782;MQ=60.00;MQRankSum=0;QD=8.59;ReadPosRankSum=0.768;SOR=0.596;VarDP=93 GT:AD:DP:GQ:PL:SB 1:21,23:44:28:28,0:9,12,10,13 0/1:21,28:49:99:771,0,553:8,13,12,16 +chrX 1489120 . G A 661 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=12.34;BaseQRankSum=-0.234;DP=102;ExcessHet=0.0000;FS=7.142;MQ=60.00;MQRankSum=0;QD=12.34;ReadPosRankSum=2.018;SOR=1.211;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:48:31:43:0,31 0/1:29,27:56:99:.:691,0,789:16,13,10,17 +chrX 1489436 . G T 293 . AC=2;AF=0.667;AN=3;AS_AltDP=43;AS_QD=3.59;BaseQRankSum=0.789;DP=139;ExcessHet=0.0000;FS=4.028;MQ=58.48;MQRankSum=-0.157;QD=3.59;ReadPosRankSum=-1.019;SOR=1.132;VarDP=90 GT:AD:DP:GQ:PL:SB 1:30,34:64:99:112,0:15,13,20,14 0/1:17,9:26:99:211,0,405:9,8,7,2 +chrX 1489726 . C G 260 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=11.60;BaseQRankSum=-1.36;DP=26;ExcessHet=0.0000;FS=1.580;MQ=54.12;MQRankSum=0.928;QD=11.60;ReadPosRankSum=-0.49;SOR=0.625;VarDP=25 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:20:35:1:.:.:0,35 0|1:12,13:25:99:.:0|1:1489726_C_G:290,0,444:1489726:5,7,7,6 +chrX 1489727 . G A 277 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=12.28;BaseQRankSum=2.294;DP=27;ExcessHet=0.0000;FS=3.682;MQ=53.65;MQRankSum=-0.271;QD=12.28;ReadPosRankSum=0.232;SOR=1.152;VarDP=25 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:20:35:1:.:.:0,35 0|1:14,11:25:99:.:1|0:1489726_C_G:307,0,512:1489726:8,6,4,7 +chrX 1490665 . A G 275 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=12.71;BaseQRankSum=-2.786;DP=25;ExcessHet=0.0000;FS=0.000;MQ=39.12;MQRankSum=-0.294;QD=12.71;ReadPosRankSum=-2.171;SOR=0.883;VarDP=24 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:2:35:1:0,35 0/1:10,14:24:99:.:305,0,249:6,4,9,5 +chrX 1491793 . A AAATG 832.97 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=22.36;BaseQRankSum=0.854;DP=54;ExcessHet=0.0000;FS=1.243;MQ=54.23;MQRankSum=-0.524;QD=22.36;ReadPosRankSum=1.289;SOR=0.791;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:2:35:1:0,35 0/1:17,22:39:99:.:872,0,612:9,8,10,12 +chrX 1491983 . C T 1107 . AC=2;AF=0.667;AN=3;AS_AltDP=74;AS_QD=8.81;BaseQRankSum=0.235;DP=131;ExcessHet=0.0000;FS=4.272;MQ=60.00;MQRankSum=0;QD=8.81;ReadPosRankSum=1.493;SOR=0.612;VarDP=129 GT:AD:DP:GQ:PL:SB 1:36,50:86:99:442,0:16,20,25,25 0/1:19,24:43:99:695,0,506:8,11,14,10 +chrX 1492360 . A G 4143 . AC=3;AF=1.00;AN=3;AS_AltDP=128;AS_QD=32.60;DP=131;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.60;SOR=0.790;VarDP=128 GT:AD:DP:GQ:PL:SB 1:0,74:74:99:2356,0:0,0,35,39 1/1:0,54:54:99:1817,162,0:0,0,26,28 +chrX 1492724 . C G 917 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=17.22;BaseQRankSum=-0.388;DP=124;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=17.22;ReadPosRankSum=0.355;SOR=0.610;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,170 0/1:21,34:55:99:.:947,0,505:11,10,17,17 +chrX 1493056 . A G 700 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=11.97;BaseQRankSum=-0.86;DP=132;ExcessHet=0.0000;FS=0.992;MQ=59.81;MQRankSum=-1.474;QD=11.97;ReadPosRankSum=0.144;SOR=0.557;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,170 0/1:32,29:61:99:.:730,0,869:11,21,11,18 +chrX 1493161 . G A 909 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=9.30;BaseQRankSum=1.275;DP=129;ExcessHet=0.0000;FS=10.967;MQ=59.96;MQRankSum=0;QD=9.30;ReadPosRankSum=-1.079;SOR=0.193;VarDP=101 GT:AD:DP:GQ:PL:SB 1:22,23:45:40:40,0:7,15,10,13 0/1:25,31:56:99:899,0,670:2,23,9,22 +chrX 1493337 . AGGGG A 1067.97 . AC=3;AF=1.00;AN=3;AS_AltDP=30;AS_QD=31.99;BaseQRankSum=1.569;DP=43;ExcessHet=0.0000;FS=0.000;MQ=58.97;MQRankSum=0;QD=35.71;ReadPosRankSum=-1.265;SOR=3.193;VarDP=31 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,20:20:99:.:.:762,0:.:0,0,18,2 1|1:1,10:11:23:0|1:1493337_AGGGG_A:345,23,0:1493337:1,0,10,0 +chrX 1493342 . AG A 1066.97 . AC=3;AF=1.00;AN=3;AS_AltDP=30;AS_QD=29.58;BaseQRankSum=1.064;DP=39;ExcessHet=0.0000;FS=0.000;MQ=58.86;MQRankSum=0;QD=35.68;ReadPosRankSum=-1.265;SOR=3.193;VarDP=31 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,20:20:99:.:.:762,0:.:0,0,18,2 1|1:1,10:11:23:0|1:1493337_AGGGG_A:344,23,0:1493337:1,0,10,0 +chrX 1493395 . GGGAAGGA G 185.97 . AC=1;AF=0.333;AN=3;AS_AltDP=6;AS_QD=15.00;BaseQRankSum=0;DP=37;ExcessHet=0.0000;FS=0.000;MQ=59.88;MQRankSum=0.524;QD=15.00;ReadPosRankSum=-0.832;SOR=1.230;VarDP=15 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:21:47:20:.:.:0,47 0|1:9,6:15:99:.:0|1:1493395_GGGAAGGA_G:225,0,360:1493395:8,1,6,0 +chrX 1493421 . GA G 179.97 . AC=1;AF=0.333;AN=3;AS_AltDP=6;AS_QD=12.88;BaseQRankSum=-1.162;DP=38;ExcessHet=0.0000;FS=0.000;MQ=59.89;MQRankSum=0.862;QD=12.88;ReadPosRankSum=0.651;SOR=0.963;VarDP=17 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:21:47:20:.:.:0,47 0|1:11,6:17:99:.:0|1:1493395_GGGAAGGA_G:219,0,444:1493395:10,1,6,0 +chrX 1493422 . A *,AAAG 444.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=10,11;AS_QD=0.00,32.25;DP=39;ExcessHet=0.0000;FS=3.004;MQ=60.00;QD=23.05;SOR=1.949;VarDP=21 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 2:0,10,11:21:47:.:.:484,47,0:.:0,0,20,1 0|1:11,6,0:17:99:0|1:1493395_GGGAAGGA_G:219,0,444,252,462,714:1493395:10,1,6,0 +chrX 1493425 . G GGAGGA 86.97 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=5.04;BaseQRankSum=0.126;DP=42;ExcessHet=0.0000;FS=0.000;MQ=59.92;MQRankSum=-0.806;QD=5.04;ReadPosRankSum=1.073;SOR=0.990;VarDP=25 GT:AD:DP:GQ:MIN_DP:PL:SB 1:11,14:25:99:.:126,0:9,2,12,2 0/0:.:17:45:17:0,45,675 +chrX 1493426 . AGGAGGGAGGGAAGG A 176.97 . AC=1;AF=0.333;AN=3;AS_AltDP=6;AS_QD=12.00;BaseQRankSum=-1.231;DP=42;ExcessHet=0.0000;FS=0.000;MQ=59.90;MQRankSum=0.825;QD=12.00;ReadPosRankSum=1.106;SOR=0.859;VarDP=18 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:23:23:23:.:.:0,23 0|1:12,6:18:99:.:0|1:1493395_GGGAAGGA_G:216,0,476:1493395:11,1,6,0 +chrX 1493445 . G A 257 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=10.63;BaseQRankSum=-1.072;DP=44;ExcessHet=0.0000;FS=0.000;MQ=59.89;MQRankSum=-1.05;QD=10.63;ReadPosRankSum=1.416;SOR=0.627;VarDP=27 GT:AD:DP:GQ:MIN_DP:PL:SB 1:10,17:27:99:.:287,0:8,2,13,4 0/0:.:20:33:16:0,33,466 +chrX 1493447 . A G 247 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=9.89;BaseQRankSum=-0.035;DP=46;ExcessHet=0.0000;FS=0.000;MQ=59.90;MQRankSum=-1.106;QD=9.89;ReadPosRankSum=0.829;SOR=0.936;VarDP=28 GT:AD:DP:GQ:MIN_DP:PL:SB 1:11,17:28:99:.:277,0:8,3,13,4 0/0:.:20:33:16:0,33,466 +chrX 1493460 . G GAA 317.97 . AC=1;AF=0.333;AN=3;AS_AltDP=10;AS_QD=22.31;BaseQRankSum=1.42;DP=63;ExcessHet=0.0000;FS=0.000;MQ=59.04;MQRankSum=-0.645;QD=22.31;ReadPosRankSum=-1.358;SOR=0.412;VarDP=16 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,764 0/1:6,10:16:99:.:357,0,226:6,0,9,1 +chrX 1493461 . G A,GGAGGA 2489 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=40,10;AS_QD=35.31,25.59;BaseQRankSum=1.858;DP=70;ExcessHet=0.0000;FS=5.315;MQ=59.52;MQRankSum=-0.123;QD=49.39;ReadPosRankSum=0.05;SOR=1.846;VarDP=51 GT:AD:DP:GQ:PL:SB 1:1,34,0:35:99:1377,0,1386:0,1,21,13 1/2:0,6,10:16:99:1142,431,388,303,0,226:0,0,15,1 +chrX 1493548 . G C 877 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=12.42;BaseQRankSum=-0.391;DP=138;ExcessHet=0.0000;FS=3.169;MQ=60.00;MQRankSum=0;QD=12.42;ReadPosRankSum=0.022;SOR=1.148;VarDP=73 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:16:65:0,16 0/1:38,35:73:99:.:907,0,1007:19,19,21,14 +chrX 1493797 . T C 4358 . AC=3;AF=1.00;AN=3;AS_AltDP=134;AS_QD=32.26;BaseQRankSum=1.408;DP=136;ExcessHet=0.0000;FS=6.314;MQ=60.00;MQRankSum=0;QD=32.26;ReadPosRankSum=0.261;SOR=0.266;VarDP=136 GT:AD:DP:GQ:PL:SB 1:2,69:71:99:2209,0:0,2,35,34 1/1:0,65:65:99:2179,195,0:0,0,35,30 +chrX 1493927 . C G 2381 . AC=2;AF=0.667;AN=3;AS_AltDP=72;AS_QD=33.49;DP=141;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.49;SOR=0.749;VarDP=72 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:99:66:0,448 1/1:0,72:72:99:.:2411,217,0:0,0,37,35 +chrX 1494202 . C G 2042 . AC=2;AF=0.667;AN=3;AS_AltDP=67;AS_QD=30.93;DP=135;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.93;SOR=0.849;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:99:66:0,448 1/1:0,67:67:99:.:2072,200,0:0,0,31,36 +chrX 1494306 . C T 6876 . AC=3;AF=1.00;AN=3;AS_AltDP=155;AS_QD=30.96;DP=158;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.55;SOR=0.966;VarDP=155 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,70:70:99:.:.:3140,0:.:0,0,36,34 1|1:0,85:85:99:0|1:1494306_C_T:3766,256,0:1494306:0,0,32,53 +chrX 1494310 . T C 6972 . AC=3;AF=1.00;AN=3;AS_AltDP=158;AS_QD=30.12;DP=162;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.32;SOR=0.914;VarDP=158 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,73:73:99:.:.:3238,0:.:0,0,38,35 1|1:0,85:85:99:0|1:1494306_C_T:3764,256,0:1494306:0,0,33,52 +chrX 1494528 . A T 4081 . AC=3;AF=1.00;AN=3;AS_AltDP=116;AS_QD=26.58;DP=120;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=35.44;SOR=0.877;VarDP=116 GT:AD:DP:GQ:PL:SB 1:0,64:64:99:2454,0:0,0,34,30 1/1:0,52:52:99:1657,155,0:0,0,29,23 +chrX 1494697 . G A 1885 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=33.60;DP=129;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.60;SOR=1.047;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:70:99:70:0,110 1/1:0,57:57:99:.:1915,171,0:0,0,33,24 +chrX 1494869 . ATTT A,ATT,ATTTTT 1340.97 . AC=0,1,2;AF=0.00,0.333,0.667;AN=3;AS_AltDP=20,22,26;AS_QD=21.85,24.91,32.00;DP=94;ExcessHet=0.0000;FS=0.000;MQ=59.57;QD=20.29;SOR=1.644;VarDP=68 GT:AD:DP:GQ:PL:SB 2:0,20,22,0:42:99:548,111,0,780:0,0,12,30 3/3:0,0,0,26:26:78:832,832,833,832,833,833,78,78,78,0:0,0,10,16 +chrX 1494964 . C T 1583 . AC=2;AF=0.667;AN=3;AS_AltDP=49;AS_QD=32.92;DP=102;ExcessHet=0.0000;FS=0.000;MQ=59.64;QD=32.92;SOR=1.609;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:52:84:52:0,84 1/1:0,49:49:99:.:1613,146,0:0,0,16,33 +chrX 1494984 . CT C 115.97 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=2.15;BaseQRankSum=-0.411;DP=126;ExcessHet=0.0000;FS=3.132;MQ=60.00;MQRankSum=0;QD=2.15;ReadPosRankSum=-0.559;SOR=0.412;VarDP=72 GT:AD:DP:GQ:MIN_DP:PL:SB 1:34,38:72:99:.:155,0:14,20,19,19 0/0:.:53:91:53:0,91,1508 +chrX 1495126 . C T 1689 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=33.71;DP=132;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.71;SOR=1.565;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:78:99:78:0,1800 1/1:0,51:51:99:.:1719,153,0:0,0,34,17 +chrX 1495355 . G A 84 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=1.56;BaseQRankSum=1.857;DP=134;ExcessHet=0.0000;FS=3.148;MQ=60.00;MQRankSum=0;QD=1.56;ReadPosRankSum=-0.177;SOR=1.121;VarDP=73 GT:AD:DP:GQ:MIN_DP:PL:SB 1:36,37:73:99:.:114,0:18,18,15,22 0/0:.:58:99:58:0,101,1478 +chrX 1495461 . A C 2632 . AC=1;AF=0.333;AN=3;AS_AltDP=72;AS_QD=28.96;DP=130;ExcessHet=0.0000;FS=0.000;MQ=57.34;QD=36.97;SOR=0.934;VarDP=72 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,72:72:99:.:2662,0:0,0,32,40 0/0:.:58:99:58:0,101,1478 +chrX 1495488 . A G 484 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=10.94;BaseQRankSum=-2.78;DP=110;ExcessHet=0.0000;FS=18.372;MQ=57.78;MQRankSum=-3.334;QD=10.94;ReadPosRankSum=1.235;SOR=0.207;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:55:61:0,55 0/1:24,23:47:99:.:514,0,674:4,20,12,11 +chrX 1495556 . G C 117 . AC=1;AF=0.333;AN=3;AS_AltDP=9;AS_QD=3.77;BaseQRankSum=0.267;DP=103;ExcessHet=0.0000;FS=6.234;MQ=57.06;MQRankSum=-2.908;QD=3.77;ReadPosRankSum=-2.302;SOR=0.148;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:55:61:0,55 0/1:30,9:39:99:.:147,0,796:7,23,4,5 +chrX 1495599 . T C 2701 . AC=3;AF=1.00;AN=3;AS_AltDP=77;AS_QD=26.33;DP=83;ExcessHet=0.0000;FS=0.000;MQ=59.76;QD=35.47;SOR=1.012;VarDP=77 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,52:52:99:.:.:1683,0:.:0,0,22,30 1|1:0,25:25:75:0|1:1495599_T_C:1048,75,0:1495599:0,0,11,14 +chrX 1495622 . A G 1061 . AC=2;AF=0.667;AN=3;AS_AltDP=25;AS_QD=32.80;DP=75;ExcessHet=0.0000;FS=0.000;MQ=59.04;QD=43.64;SOR=0.770;VarDP=25 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:50:99:50:.:.:0,248 1|1:0,25:25:75:.:0|1:1495599_T_C:1091,75,0:1495599:0,0,12,13 +chrX 1495791 . C G 763 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=22.66;BaseQRankSum=-1.484;DP=85;ExcessHet=0.0000;FS=5.290;MQ=58.58;MQRankSum=-0.173;QD=22.66;ReadPosRankSum=-1.277;SOR=0.334;VarDP=35 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:50:99:50:.:.:0,248 0|1:14,21:35:99:.:0|1:1495791_C_G:793,0,525:1495791:10,4,10,11 +chrX 1495795 . C T 764 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=22.69;BaseQRankSum=-1.375;DP=85;ExcessHet=0.0000;FS=5.073;MQ=58.58;MQRankSum=-0.173;QD=22.69;ReadPosRankSum=-0.636;SOR=0.220;VarDP=35 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:50:99:50:.:.:0,248 0|1:14,21:35:99:.:0|1:1495791_C_G:794,0,525:1495791:10,4,11,10 +chrX 1495800 . A G 703 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=22.21;BaseQRankSum=-1.193;DP=84;ExcessHet=0.0000;FS=5.440;MQ=58.53;MQRankSum=-0.256;QD=22.21;ReadPosRankSum=-1.66;SOR=0.348;VarDP=33 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:50:99:50:.:.:0,248 0|1:14,19:33:99:.:0|1:1495791_C_G:733,0,531:1495791:10,4,9,10 +chrX 1496061 . T C 3526 . AC=2;AF=0.667;AN=3;AS_AltDP=117;AS_QD=23.87;BaseQRankSum=-0.885;DP=154;ExcessHet=0.0000;FS=9.660;MQ=60.00;MQRankSum=0;QD=23.87;ReadPosRankSum=2.247;SOR=0.226;VarDP=149 GT:AD:DP:GQ:PL:SB 1:0,76:76:99:2490,0:0,0,38,38 0/1:32,41:73:99:1066,0,834:10,22,19,22 +chrX 1496222 . C G 2227 . AC=3;AF=1.00;AN=3;AS_AltDP=97;AS_QD=17.63;BaseQRankSum=1.431;DP=133;ExcessHet=0.0000;FS=2.790;MQ=60.00;MQRankSum=0;QD=17.63;ReadPosRankSum=-0.068;SOR=0.434;VarDP=128 GT:AD:DP:GQ:PL:SB 1:31,41:72:99:377,0:10,21,14,27 1/1:0,56:56:99:1880,168,0:0,0,25,31 +chrX 1496303 . A G 4019 . AC=3;AF=1.00;AN=3;AS_AltDP=125;AS_QD=32.39;DP=130;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.39;SOR=0.709;VarDP=125 GT:AD:DP:GQ:PL:SB 1:0,71:71:99:2314,0:0,0,34,37 1/1:0,54:54:99:1735,161,0:0,0,29,25 +chrX 1496494 . A G 618 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=13.79;BaseQRankSum=0.018;DP=107;ExcessHet=0.0000;FS=4.125;MQ=60.00;MQRankSum=0;QD=13.79;ReadPosRankSum=-0.884;SOR=0.907;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:53:99:53:0,497 0/1:23,24:47:99:.:648,0,629:13,10,10,14 +chrX 1496603 . A G 632 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=13.51;BaseQRankSum=-2.518;DP=106;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.51;ReadPosRankSum=-0.59;SOR=0.749;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:53:99:53:0,497 0/1:24,25:49:99:.:662,0,687:7,17,7,18 +chrX 1496644 . G A 3598 . AC=3;AF=1.00;AN=3;AS_AltDP=98;AS_QD=25.50;DP=109;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=37.02;SOR=1.014;VarDP=98 GT:AD:DP:GQ:PL:SB 1:0,48:48:99:1766,0:0,0,26,22 1/1:0,50:50:99:1862,150,0:0,0,16,34 +chrX 1496655 . T A 544 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=11.48;BaseQRankSum=-0.027;DP=120;ExcessHet=0.0000;FS=1.202;MQ=60.00;MQRankSum=0;QD=11.48;ReadPosRankSum=1.373;SOR=1.041;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:99:60:0,516 0/1:27,23:50:99:.:574,0,729:9,18,6,17 +chrX 1496765 . T A 219 . AC=1;AF=0.333;AN=3;AS_AltDP=9;AS_QD=13.83;BaseQRankSum=-0.674;DP=92;ExcessHet=0.0000;FS=0.000;MQ=59.69;MQRankSum=0;QD=13.83;ReadPosRankSum=0.129;SOR=0.693;VarDP=18 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:99:60:0,516 0/1:9,9:18:99:.:249,0,259:0,9,0,9 +chrX 1496901 . G A 387 . AC=2;AF=0.667;AN=3;AS_AltDP=12;AS_QD=34.75;DP=81;ExcessHet=0.0000;FS=0.000;MQ=58.79;QD=34.75;SOR=5.136;VarDP=12 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:99:60:0,516 1/1:0,12:12:36:.:417,36,0:0,0,12,0 +chrX 1496970 . G A 316 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=10.81;BaseQRankSum=-0.324;DP=100;ExcessHet=0.0000;FS=1.814;MQ=58.95;MQRankSum=1.717;QD=10.81;ReadPosRankSum=-1.115;SOR=1.329;VarDP=32 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:99:60:0,516 0/1:17,15:32:99:.:346,0,422:13,4,13,2 +chrX 1497047 . T C 4051 . AC=3;AF=1.00;AN=3;AS_AltDP=102;AS_QD=26.27;DP=109;ExcessHet=0.0000;FS=0.000;MQ=59.59;QD=40.01;SOR=1.656;VarDP=102 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,62:62:99:.:.:2330,0:.:0,0,39,23 1|1:0,40:40:99:0|1:1497047_T_C:1751,120,0:1497047:0,0,30,10 +chrX 1497048 . G A 1721 . AC=2;AF=0.667;AN=3;AS_AltDP=40;AS_QD=32.66;DP=106;ExcessHet=0.0000;FS=0.000;MQ=59.32;QD=43.78;SOR=2.191;VarDP=40 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:59:99:59:.:.:0,287 1|1:0,40:40:99:.:0|1:1497047_T_C:1751,120,0:1497047:0,0,30,10 +chrX 1497119 . G C 175 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=3.73;BaseQRankSum=-3.15;DP=100;ExcessHet=0.0000;FS=2.282;MQ=59.61;MQRankSum=-1.277;QD=3.73;ReadPosRankSum=0.228;SOR=0.655;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 1:25,30:55:99:.:205,0:14,11,14,16 0/0:.:41:71:41:0,71,973 +chrX 1497141 . C G 230 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=5.00;BaseQRankSum=-1.816;DP=95;ExcessHet=0.0000;FS=1.052;MQ=59.58;MQRankSum=-1.244;QD=5.00;ReadPosRankSum=1.632;SOR=0.532;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 1:23,29:52:99:.:260,0:13,10,15,14 0/0:.:41:71:41:0,71,973 +chrX 1497179 . G A 387 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=9.48;BaseQRankSum=0.909;DP=87;ExcessHet=0.0000;FS=4.635;MQ=59.61;MQRankSum=-0.709;QD=9.48;ReadPosRankSum=0.879;SOR=0.223;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 1:16,28:44:99:.:417,0:11,5,14,14 0/0:.:41:71:41:0,71,973 +chrX 1497221 . C CA,CAA 682.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=13,15;AS_QD=31.92,32.73;DP=84;ExcessHet=0.0000;FS=0.000;MQ=57.83;QD=25.79;SOR=2.147;VarDP=28 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:54:59:43:0,59,59 1/2:0,13,15:28:99:.:722,299,218,281,0,231:0,0,7,21 +chrX 1497529 . G A 600 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=10.50;BaseQRankSum=0.516;DP=123;ExcessHet=0.0000;FS=2.201;MQ=60.00;MQRankSum=0;QD=10.50;ReadPosRankSum=-0.15;SOR=1.064;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,1404 0/1:35,25:60:99:.:630,0,907:17,18,10,15 +chrX 1497573 . G A 585 . AC=1;AF=0.333;AN=3;AS_AltDP=44;AS_QD=8.20;BaseQRankSum=-0.147;DP=130;ExcessHet=0.0000;FS=0.000;MQ=59.64;MQRankSum=2.107;QD=8.20;ReadPosRankSum=0.538;SOR=0.617;VarDP=75 GT:AD:DP:GQ:MIN_DP:PL:SB 1:31,44:75:99:.:615,0:12,19,18,26 0/0:.:54:99:54:0,120,1800 +chrX 1497598 . C T 515 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=8.93;BaseQRankSum=-1.002;DP=117;ExcessHet=0.0000;FS=0.000;MQ=59.56;MQRankSum=2.133;QD=8.93;ReadPosRankSum=0.521;SOR=0.595;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 1:25,36:61:99:.:545,0:9,16,14,22 0/0:.:54:99:54:0,120,1800 +chrX 1497602 . G A 899 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=16.59;BaseQRankSum=1.371;DP=115;ExcessHet=0.0000;FS=10.144;MQ=60.00;MQRankSum=0;QD=16.59;ReadPosRankSum=0.517;SOR=0.241;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,1305 0/1:23,33:56:99:.:929,0,561:6,17,17,16 +chrX 1497639 . C CAA 661.97 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=13.75;BaseQRankSum=0.803;DP=115;ExcessHet=0.0000;FS=17.863;MQ=59.70;MQRankSum=-1.257;QD=13.75;ReadPosRankSum=0.682;SOR=2.937;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,1305 0/1:32,19:51:99:.:701,0,1234:17,15,3,16 +chrX 1497656 . A AAAAT 490.97 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=16.06;BaseQRankSum=1.464;DP=106;ExcessHet=0.0000;FS=7.791;MQ=60.00;MQRankSum=0;QD=16.06;ReadPosRankSum=0.328;SOR=1.149;VarDP=33 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,1305 0/1:19,14:33:99:.:530,0,756:12,7,5,9 +chrX 1498278 . T C 2555 . AC=3;AF=1.00;AN=3;AS_AltDP=85;AS_QD=23.29;BaseQRankSum=-0.493;DP=117;ExcessHet=0.0000;FS=0.889;MQ=55.44;MQRankSum=-3.214;QD=23.29;ReadPosRankSum=2.635;SOR=0.921;VarDP=111 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:26,33:59:99:.:.:404,0:.:10,16,9,24 1|1:0,52:52:99:0|1:1498278_T_C:2181,156,0:1498278:0,0,20,32 +chrX 1498302 . A G 2456 . AC=3;AF=1.00;AN=3;AS_AltDP=74;AS_QD=27.02;BaseQRankSum=-0.66;DP=97;ExcessHet=0.0000;FS=0.000;MQ=53.89;MQRankSum=-2.524;QD=27.02;ReadPosRankSum=-0.042;SOR=0.622;VarDP=92 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:18,32:50:99:.:.:607,0:.:5,13,9,23 1|1:0,42:42:99:0|1:1498278_T_C:1879,126,0:1498278:0,0,14,28 +chrX 1498330 . T C 691 . AC=2;AF=0.667;AN=3;AS_AltDP=40;AS_QD=9.61;BaseQRankSum=-1.355;DP=78;ExcessHet=0.0000;FS=4.845;MQ=51.80;MQRankSum=-0.264;QD=9.61;ReadPosRankSum=-0.323;SOR=1.362;VarDP=75 GT:AD:DP:GQ:PL:SB 1:17,26:43:99:263,0:7,10,7,19 0/1:18,14:32:99:458,0,693:7,11,4,10 +chrX 1498337 . C T 555 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=20.89;BaseQRankSum=1.523;DP=62;ExcessHet=0.0000;FS=3.969;MQ=49.96;MQRankSum=0.424;QD=20.89;ReadPosRankSum=-0.074;SOR=0.169;VarDP=28 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:34:29:32:0,29 0/1:12,16:28:99:.:585,0,432:2,10,6,10 +chrX 1498355 . G A 1095 . AC=2;AF=0.667;AN=3;AS_AltDP=25;AS_QD=40.38;DP=58;ExcessHet=0.0000;FS=0.000;MQ=47.11;QD=45.00;SOR=0.941;VarDP=25 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:34:29:32:.:.:0,29 1|1:0,25:25:75:.:0|1:1498355_G_A:1125,75,0:1498355:0,0,11,14 +chrX 1498368 . T C 985 . AC=2;AF=0.667;AN=3;AS_AltDP=23;AS_QD=34.64;DP=55;ExcessHet=0.0000;FS=0.000;MQ=46.84;QD=44.13;SOR=0.776;VarDP=23 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:34:29:32:.:.:0,29 1|1:0,23:23:69:.:0|1:1498355_G_A:1015,69,0:1498355:0,0,12,11 +chrX 1498400 . T C 921 . AC=2;AF=0.667;AN=3;AS_AltDP=26;AS_QD=25.65;DP=60;ExcessHet=0.0000;FS=0.000;MQ=53.89;QD=36.58;SOR=1.697;VarDP=26 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:34:29:32:0,29 1/1:0,26:26:78:.:951,78,0:0,0,18,8 +chrX 1498405 . C CA 189.97 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=6.94;BaseQRankSum=0.403;DP=80;ExcessHet=0.0000;FS=1.423;MQ=56.15;MQRankSum=-1.634;QD=6.94;ReadPosRankSum=1.301;SOR=1.065;VarDP=33 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:34:29:32:0,29 0/1:16,17:33:99:.:229,0,246:10,6,12,5 +chrX 1498522 . AT A 920.97 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=16.84;BaseQRankSum=-0.85;DP=97;ExcessHet=0.0000;FS=0.000;MQ=59.69;MQRankSum=0;QD=16.84;ReadPosRankSum=-1.196;SOR=0.638;VarDP=57 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:34:29:32:.:.:0,29 0|1:29,28:57:99:.:0|1:1498522_AT_A:960,0,1009:1498522:17,12,16,12 +chrX 1498540 . G A 906 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=14.86;BaseQRankSum=1.481;DP=98;ExcessHet=0.0000;FS=0.000;MQ=59.69;MQRankSum=0;QD=14.86;ReadPosRankSum=0.765;SOR=0.689;VarDP=63 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:34:29:32:.:.:0,29 0|1:36,27:63:99:.:0|1:1498522_AT_A:936,0,1200:1498522:20,16,15,12 +chrX 1498566 . A G 518 . AC=2;AF=0.667;AN=3;AS_AltDP=38;AS_QD=6.09;BaseQRankSum=1.913;DP=94;ExcessHet=0.0000;FS=2.766;MQ=59.35;MQRankSum=0;QD=6.09;ReadPosRankSum=1.47;SOR=0.857;VarDP=90 GT:AD:DP:GQ:PL:SB 1:16,19:35:99:102,0:11,5,10,9 0/1:36,19:55:99:446,0,881:14,22,11,8 +chrX 1498708 . C G 615 . AC=1;AF=0.500;AN=2;AS_AltDP=26;AS_QD=14.33;BaseQRankSum=-0.405;DP=108;ExcessHet=0.0000;FS=0.000;MQ=59.49;MQRankSum=-1.19;QD=14.33;ReadPosRankSum=1.862;SOR=0.693;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB .:.:58:0:58:0,0 0/1:19,26:45:99:.:645,0,460:11,8,15,11 +chrX 1498948 . C T 926 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=8.54;BaseQRankSum=-0.175;DP=116;ExcessHet=0.0000;FS=14.357;MQ=60.00;MQRankSum=0;QD=8.54;ReadPosRankSum=1.787;SOR=0.954;VarDP=112 GT:AD:DP:GQ:PL:SB 1:26,29:55:99:111,0:16,10,17,12 0/1:26,31:57:99:845,0,706:4,22,19,12 +chrX 1499022 . A G 896 . AC=2;AF=0.667;AN=3;AS_AltDP=71;AS_QD=7.29;BaseQRankSum=-0.007;DP=132;ExcessHet=0.0000;FS=1.429;MQ=59.75;MQRankSum=1.31;QD=7.29;ReadPosRankSum=-0.885;SOR=0.549;VarDP=127 GT:AD:DP:GQ:PL:SB 1:35,37:72:74:74,0:21,14,22,15 0/1:21,34:55:99:852,0,530:12,9,17,17 +chrX 1499113 . A G 1209 . AC=2;AF=0.667;AN=3;AS_AltDP=80;AS_QD=9.46;BaseQRankSum=-0.577;DP=135;ExcessHet=0.0000;FS=0.665;MQ=59.93;MQRankSum=0;QD=9.46;ReadPosRankSum=0.264;SOR=0.586;VarDP=131 GT:AD:DP:GQ:PL:SB 1:34,42:76:99:213,0:12,22,23,19 0/1:17,38:55:99:1026,0,391:15,2,17,21 +chrX 1499161 . TTC T 1460.97 . AC=2;AF=0.667;AN=3;AS_AltDP=67;AS_QD=12.61;BaseQRankSum=2.587;DP=125;ExcessHet=0.0000;FS=3.322;MQ=59.26;MQRankSum=1.323;QD=12.61;ReadPosRankSum=1.856;SOR=0.460;VarDP=119 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:27,34:61:99:.:.:264,0:.:10,17,16,18 0|1:25,33:58:99:0|1:1499161_TTC_T:1236,0,931:1499161:20,5,18,15 +chrX 1499165 . T G 1470 . AC=2;AF=0.667;AN=3;AS_AltDP=67;AS_QD=12.61;BaseQRankSum=0.583;DP=123;ExcessHet=0.0000;FS=3.322;MQ=59.25;MQRankSum=1.323;QD=12.61;ReadPosRankSum=1.776;SOR=0.460;VarDP=119 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:27,34:61:99:.:.:264,0:.:10,17,16,18 0|1:25,33:58:99:0|1:1499161_TTC_T:1236,0,931:1499161:20,5,18,15 +chrX 1499168 . T C 1174 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=21.12;BaseQRankSum=0.995;DP=125;ExcessHet=0.0000;FS=10.482;MQ=58.93;MQRankSum=1.29;QD=21.12;ReadPosRankSum=-0.289;SOR=0.123;VarDP=57 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:67:99:67:.:.:0,1236 0|1:25,32:57:99:.:0|1:1499161_TTC_T:1204,0,934:1499161:20,5,18,14 +chrX 1499510 . T C 864 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=12.96;BaseQRankSum=-2.095;DP=133;ExcessHet=0.0000;FS=0.918;MQ=60.00;MQRankSum=0;QD=12.96;ReadPosRankSum=-1.713;SOR=0.527;VarDP=69 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,168 0/1:33,36:69:99:.:894,0,880:14,19,17,19 +chrX 1499547 . T A 853 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=7.12;BaseQRankSum=0.974;DP=128;ExcessHet=0.0000;FS=6.730;MQ=60.00;MQRankSum=0;QD=7.12;ReadPosRankSum=1.67;SOR=0.403;VarDP=124 GT:AD:DP:GQ:PL:SB 1:30,32:62:84:84,0:12,18,19,13 0/1:31,31:62:99:799,0,806:12,19,13,18 +chrX 1499840 . TTTTTGTTTTG T 426.97 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=8.47;BaseQRankSum=-1.03;DP=142;ExcessHet=0.0000;FS=22.983;MQ=59.45;MQRankSum=1.262;QD=8.47;ReadPosRankSum=-1.23;SOR=1.872;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 1:22,33:55:99:.:466,0:7,15,24,9 0/0:.:66:99:66:0,120,1800 +chrX 1499944 . C T 813 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=13.60;BaseQRankSum=2.543;DP=125;ExcessHet=0.0000;FS=2.161;MQ=57.45;MQRankSum=-2.903;QD=13.60;ReadPosRankSum=-0.441;SOR=0.998;VarDP=62 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:59:99:59:.:.:0,1146 0|1:38,24:62:99:.:0|1:1499944_C_T:843,0,1435:1499944:21,17,15,9 +chrX 1499958 . C A 772 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=13.59;BaseQRankSum=1.576;DP=122;ExcessHet=0.0000;FS=1.027;MQ=57.33;MQRankSum=-3.016;QD=13.59;ReadPosRankSum=-1.101;SOR=0.852;VarDP=59 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:59:99:59:.:.:0,1146 0|1:37,22:59:99:.:0|1:1499944_C_T:802,0,1460:1499944:22,15,14,8 +chrX 1499959 . C T 772 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=13.59;BaseQRankSum=1.804;DP=122;ExcessHet=0.0000;FS=1.027;MQ=57.33;MQRankSum=-3.016;QD=13.59;ReadPosRankSum=-1.448;SOR=0.852;VarDP=59 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:59:99:59:.:.:0,1146 0|1:37,22:59:99:.:0|1:1499944_C_T:802,0,1460:1499944:22,15,14,8 +chrX 1499966 . C G 656 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=12.25;BaseQRankSum=0.506;DP=120;ExcessHet=0.0000;FS=1.098;MQ=57.24;MQRankSum=-3.299;QD=12.25;ReadPosRankSum=-1.02;SOR=0.947;VarDP=56 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:59:99:59:.:.:0,1146 0|1:37,19:56:99:.:0|1:1499944_C_T:686,0,1449:1499944:21,16,12,7 +chrX 1499997 . T C 224 . AC=1;AF=0.333;AN=3;AS_AltDP=9;AS_QD=5.91;BaseQRankSum=-1.154;DP=106;ExcessHet=0.0000;FS=1.556;MQ=56.27;MQRankSum=-4.413;QD=5.91;ReadPosRankSum=-2.346;SOR=1.022;VarDP=43 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:59:99:59:.:.:0,1146 0|1:34,9:43:99:.:0|1:1499997_T_C:254,0,1350:1499997:23,11,7,2 +chrX 1500003 . CGTGT C 222.97 . AC=1;AF=0.333;AN=3;AS_AltDP=9;AS_QD=5.95;BaseQRankSum=1.056;DP=104;ExcessHet=0.0000;FS=1.579;MQ=56.77;MQRankSum=-5.019;QD=5.95;ReadPosRankSum=-2.914;SOR=1.127;VarDP=44 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:59:99:59:.:.:0,1146 0|1:35,9:44:99:.:0|1:1499997_T_C:262,0,1422:1499997:23,12,7,2 +chrX 1500007 . T TACCC 155.97 . AC=1;AF=0.333;AN=3;AS_AltDP=7;AS_QD=4.88;BaseQRankSum=0.365;DP=100;ExcessHet=0.0000;FS=0.000;MQ=56.45;MQRankSum=-5.606;QD=4.88;ReadPosRankSum=-3.125;SOR=0.874;VarDP=40 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:59:99:59:.:.:0,1146 0|1:33,7:40:99:.:0|1:1499997_T_C:195,0,1365:1499997:21,12,5,2 +chrX 1500015 . T C 36 . AC=1;AF=0.333;AN=3;AS_AltDP=4;AS_QD=1.74;BaseQRankSum=0.799;DP=98;ExcessHet=0.0000;FS=5.593;MQ=56.98;MQRankSum=-5.387;QD=1.74;ReadPosRankSum=-2.181;SOR=2.621;VarDP=38 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:59:99:59:.:.:0,1146 0|1:34,4:38:66:.:0|1:1499997_T_C:66,0,1416:1499997:20,14,4,0 +chrX 1500019 . C T 39 . AC=1;AF=0.333;AN=3;AS_AltDP=4;AS_QD=1.86;BaseQRankSum=0.992;DP=99;ExcessHet=0.0000;FS=5.591;MQ=56.62;MQRankSum=-5.312;QD=1.86;ReadPosRankSum=-2.076;SOR=2.712;VarDP=37 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:59:99:59:.:.:0,1146 0|1:33,4:37:69:.:0|1:1499997_T_C:69,0,1374:1499997:19,14,4,0 +chrX 1500020 . A G 39 . AC=1;AF=0.333;AN=3;AS_AltDP=4;AS_QD=1.86;BaseQRankSum=-0.224;DP=99;ExcessHet=0.0000;FS=5.591;MQ=56.62;MQRankSum=-5.312;QD=1.86;ReadPosRankSum=-2.102;SOR=2.712;VarDP=37 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:59:99:59:.:.:0,1146 0|1:33,4:37:69:.:0|1:1499997_T_C:69,0,1374:1499997:19,14,4,0 +chrX 1500060 . G A 2131 . AC=2;AF=0.667;AN=3;AS_AltDP=69;AS_QD=21.19;BaseQRankSum=1.735;DP=111;ExcessHet=0.0000;FS=6.811;MQ=56.92;MQRankSum=-3.267;QD=21.19;ReadPosRankSum=-1.308;SOR=0.801;VarDP=102 GT:AD:DP:GQ:PL:SB 1:0,59:59:99:1956,0:0,0,23,36 0/1:33,10:43:99:205,0,887:19,14,7,3 +chrX 1500148 . G A 1095 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=16.54;BaseQRankSum=-0.955;DP=154;ExcessHet=0.0000;FS=0.931;MQ=57.64;MQRankSum=-2.936;QD=16.54;ReadPosRankSum=1.189;SOR=0.551;VarDP=68 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:74:99:74:.:.:0,431 0|1:38,30:68:99:.:0|1:1500148_G_A:1125,0,1489:1500148:15,23,13,17 +chrX 1500153 . C A 1079 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=15.84;BaseQRankSum=0.404;DP=153;ExcessHet=0.0000;FS=0.913;MQ=58.10;MQRankSum=-2.739;QD=15.84;ReadPosRankSum=1.426;SOR=0.568;VarDP=70 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:74:99:74:.:.:0,431 0|1:40,30:70:99:.:0|1:1500148_G_A:1109,0,1553:1500148:16,24,13,17 +chrX 1500162 . G T 1051 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=15.67;BaseQRankSum=-1.363;DP=153;ExcessHet=0.0000;FS=0.000;MQ=58.51;MQRankSum=-2.081;QD=15.67;ReadPosRankSum=0.358;SOR=0.604;VarDP=69 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:74:99:74:.:.:0,431 0|1:39,30:69:99:.:0|1:1500148_G_A:1081,0,1500:1500148:16,23,13,17 +chrX 1500182 . T C 515 . AC=1;AF=0.333;AN=3;AS_AltDP=45;AS_QD=7.57;BaseQRankSum=-0.299;DP=140;ExcessHet=0.0000;FS=18.291;MQ=59.27;MQRankSum=1.043;QD=7.57;ReadPosRankSum=-1.774;SOR=1.221;VarDP=72 GT:AD:DP:GQ:MIN_DP:PL:SB 1:27,45:72:99:.:545,0:18,9,16,29 0/0:.:73:26:58:0,26,1414 +chrX 1500616 . TG T 1013.97 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=19.50;BaseQRankSum=-1.984;DP=130;ExcessHet=0.0000;FS=0.000;MQ=59.90;MQRankSum=-0.824;QD=19.50;ReadPosRankSum=0.079;SOR=0.674;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:75:99:75:0,1800 0/1:23,31:54:99:.:1053,0,767:11,12,15,16 +chrX 1500680 . C T 57 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=1.28;BaseQRankSum=0.16;DP=133;ExcessHet=0.0000;FS=2.086;MQ=60.00;MQRankSum=0;QD=1.28;ReadPosRankSum=-0.172;SOR=1.071;VarDP=68 GT:AD:DP:GQ:MIN_DP:PL:SB 1:33,35:68:87:.:87,0:14,19,12,23 0/0:.:63:99:63:0,107,1558 +chrX 1500694 . A C 68 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=1.44;BaseQRankSum=-1.598;DP=133;ExcessHet=0.0000;FS=0.958;MQ=60.00;MQRankSum=0;QD=1.44;ReadPosRankSum=-0.424;SOR=0.922;VarDP=68 GT:AD:DP:GQ:MIN_DP:PL:SB 1:33,35:68:98:.:98,0:13,20,12,23 0/0:.:63:99:63:0,107,1558 +chrX 1500699 . A T 109 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=2.07;BaseQRankSum=-0.547;DP=133;ExcessHet=0.0000;FS=3.403;MQ=60.00;MQRankSum=0;QD=2.07;ReadPosRankSum=-0.49;SOR=1.140;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 1:32,35:67:99:.:139,0:13,19,11,24 0/0:.:63:99:63:0,107,1558 +chrX 1501258 . T G 883 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=13.83;BaseQRankSum=0.433;DP=138;ExcessHet=0.0000;FS=1.998;MQ=60.00;MQRankSum=0;QD=13.83;ReadPosRankSum=2.086;SOR=0.484;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:99:68:0,1524 0/1:32,34:66:99:.:913,0,834:18,14,17,17 +chrX 1501593 . T A 1199 . AC=2;AF=0.667;AN=3;AS_AltDP=37;AS_QD=33.22;DP=105;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.22;SOR=1.432;VarDP=37 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:99:68:0,1524 1/1:0,37:37:99:.:1229,111,0:0,0,24,13 +chrX 1501739 . G A 420 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=10.23;BaseQRankSum=0.961;DP=97;ExcessHet=0.0000;FS=1.186;MQ=59.18;MQRankSum=-1.102;QD=10.23;ReadPosRankSum=-0.478;SOR=0.521;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 1:17,27:44:99:.:450,0:11,6,16,11 0/0:.:52:52:52:0,52,1122 +chrX 1501743 . A C 395 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=9.44;BaseQRankSum=-0.345;DP=97;ExcessHet=0.0000;FS=0.000;MQ=59.18;MQRankSum=-1.135;QD=9.44;ReadPosRankSum=-0.096;SOR=0.638;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 1:18,27:45:99:.:425,0:11,7,16,11 0/0:.:52:52:52:0,52,1122 +chrX 1501755 . G A 248 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=5.56;BaseQRankSum=1.38;DP=102;ExcessHet=0.0000;FS=1.113;MQ=59.27;MQRankSum=-1.29;QD=5.56;ReadPosRankSum=1.373;SOR=0.976;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 1:23,27:50:99:.:278,0:13,10,17,10 0/0:.:52:52:52:0,52,1122 +chrX 1501944 . T C 736 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=13.21;BaseQRankSum=-2.037;DP=121;ExcessHet=0.0000;FS=1.076;MQ=59.77;MQRankSum=0;QD=13.21;ReadPosRankSum=-0.156;SOR=0.483;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:54:60:0,54 0/1:27,31:58:99:.:766,0,725:19,8,20,11 +chrX 1502069 . T C 2544 . AC=2;AF=0.667;AN=3;AS_AltDP=71;AS_QD=31.98;DP=131;ExcessHet=0.0000;FS=0.000;MQ=59.80;QD=36.25;SOR=0.721;VarDP=71 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:54:60:0,54 1/1:0,71:71:99:.:2574,213,0:0,0,35,36 +chrX 1502088 . A T 691 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=11.27;BaseQRankSum=0.437;DP=128;ExcessHet=0.0000;FS=2.112;MQ=59.79;MQRankSum=-0.795;QD=11.27;ReadPosRankSum=-0.44;SOR=1.038;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:54:60:0,54 0/1:36,28:64:99:.:721,0,987:17,19,11,17 +chrX 1502158 . A G 843 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=12.47;BaseQRankSum=0.696;DP=132;ExcessHet=0.0000;FS=1.990;MQ=59.57;MQRankSum=-1.141;QD=12.47;ReadPosRankSum=0.33;SOR=0.763;VarDP=70 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:54:60:0,54 0/1:37,33:70:99:.:873,0,967:20,17,15,18 +chrX 1502486 . A T 720 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=13.39;BaseQRankSum=-0.871;DP=118;ExcessHet=0.0000;FS=7.533;MQ=60.00;MQRankSum=0;QD=13.39;ReadPosRankSum=0.812;SOR=1.561;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:54:60:0,54 0/1:28,28:56:99:.:750,0,785:15,13,9,19 +chrX 1502817 . A G 5165 . AC=2;AF=0.667;AN=3;AS_AltDP=124;AS_QD=32.65;BaseQRankSum=3.981;DP=137;ExcessHet=0.0000;FS=1.275;MQ=56.95;MQRankSum=0.47;QD=38.77;ReadPosRankSum=0.663;SOR=1.022;VarDP=134 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:3,79:82:99:.:.:3379,0:.:1,2,44,35 0|1:7,45:52:99:0|1:1502817_A_G:1816,0,158:1502817:4,3,27,18 +chrX 1502823 . C A 5229 . AC=2;AF=0.667;AN=3;AS_AltDP=124;AS_QD=29.32;BaseQRankSum=2.604;DP=134;ExcessHet=0.0000;FS=1.257;MQ=57.00;MQRankSum=0.47;QD=39.25;ReadPosRankSum=0.704;SOR=0.981;VarDP=134 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:3,79:82:99:.:.:3420,0:.:1,2,44,35 0|1:7,45:52:99:0|1:1502817_A_G:1839,0,158:1502817:4,3,26,19 +chrX 1502829 . A G 5284 . AC=2;AF=0.667;AN=3;AS_AltDP=125;AS_QD=32.33;BaseQRankSum=2.708;DP=135;ExcessHet=0.0000;FS=0.000;MQ=57.02;MQRankSum=0.481;QD=39.36;ReadPosRankSum=0.801;SOR=0.882;VarDP=135 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:3,80:83:99:.:.:3465,0:.:1,2,44,36 0|1:7,45:52:99:0|1:1502817_A_G:1849,0,158:1502817:4,3,24,21 +chrX 1502833 . C T 5180 . AC=2;AF=0.667;AN=3;AS_AltDP=123;AS_QD=30.77;BaseQRankSum=1.997;DP=132;ExcessHet=0.0000;FS=0.000;MQ=57.21;MQRankSum=0.507;QD=39.47;ReadPosRankSum=0.926;SOR=0.656;VarDP=132 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:3,79:82:99:.:.:3400,0:.:1,2,42,37 0|1:6,44:50:99:0|1:1502817_A_G:1810,0,120:1502817:4,2,24,20 +chrX 1502842 . A G 5163 . AC=2;AF=0.667;AN=3;AS_AltDP=121;AS_QD=28.48;BaseQRankSum=1.735;DP=126;ExcessHet=0.0000;FS=2.056;MQ=57.20;MQRankSum=-1.182;QD=41.54;ReadPosRankSum=1.18;SOR=0.273;VarDP=125 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,75:75:99:.:.:3334,0:.:0,0,38,37 0|1:4,46:50:30:0|1:1502817_A_G:1859,0,30:1502817:3,1,26,20 +chrX 1503405 . A G 4083 . AC=3;AF=1.00;AN=3;AS_AltDP=125;AS_QD=32.90;DP=133;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.90;SOR=0.845;VarDP=125 GT:AD:DP:GQ:PL:SB 1:0,56:56:99:1870,0:0,0,30,26 1/1:0,69:69:99:2243,206,0:0,0,37,32 +chrX 1503859 . T A 817 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=13.66;BaseQRankSum=0.676;DP=135;ExcessHet=0.0000;FS=9.305;MQ=59.54;MQRankSum=1.496;QD=13.66;ReadPosRankSum=2.043;SOR=1.911;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:70:99:70:0,1785 0/1:30,32:62:99:.:847,0,772:15,15,9,23 +chrX 1504110 . A G 3994 . AC=3;AF=1.00;AN=3;AS_AltDP=120;AS_QD=33.53;DP=125;ExcessHet=0.0000;FS=0.000;MQ=59.85;QD=33.53;SOR=0.950;VarDP=120 GT:AD:DP:GQ:PL:SB 1:0,59:59:99:2005,0:0,0,32,27 1/1:0,61:61:99:2019,183,0:0,0,35,26 +chrX 1504209 . G A 654 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=12.44;BaseQRankSum=0.672;DP=120;ExcessHet=0.0000;FS=0.000;MQ=59.52;MQRankSum=0;QD=12.44;ReadPosRankSum=-0.118;SOR=0.665;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,154 0/1:30,25:55:99:.:684,0,823:13,17,11,14 +chrX 1504315 . C CAA,CA 2323.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=58,20;AS_QD=23.47,7.83;BaseQRankSum=-0.587;DP=138;ExcessHet=0.0000;FS=16.403;MQ=59.56;MQRankSum=0;QD=22.50;ReadPosRankSum=-0.14;SOR=0.106;VarDP=105 GT:AD:DP:GQ:PL:SB 1:0,58,0:58:99:1995,0,1996:0,0,26,32 0/2:27,0,20:47:99:368,449,1122,0,673,613:6,21,12,8 +chrX 1504524 . G A 759 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=12.52;BaseQRankSum=0.19;DP=134;ExcessHet=0.0000;FS=1.014;MQ=60.00;MQRankSum=0;QD=12.52;ReadPosRankSum=-0.048;SOR=0.487;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:44:68:0,44 0/1:34,29:63:99:.:789,0,952:23,11,18,11 +chrX 1504641 . T C 633 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=10.69;BaseQRankSum=-0.547;DP=137;ExcessHet=0.0000;FS=2.155;MQ=60.00;MQRankSum=0;QD=10.69;ReadPosRankSum=-0.419;SOR=0.428;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:44:68:0,44 0/1:35,27:62:99:.:663,0,956:14,21,13,14 +chrX 1504707 . T C 4129 . AC=3;AF=1.00;AN=3;AS_AltDP=133;AS_QD=31.27;DP=142;ExcessHet=0.0000;FS=0.000;MQ=59.91;QD=31.27;SOR=0.770;VarDP=133 GT:AD:DP:GQ:PL:SB 1:0,79:79:99:2474,0:0,0,38,41 1/1:0,54:54:99:1685,161,0:0,0,26,28 +chrX 1504903 . C T 778 . AC=2;AF=0.667;AN=3;AS_AltDP=69;AS_QD=5.46;BaseQRankSum=-0.085;DP=151;ExcessHet=0.0000;FS=0.000;MQ=59.46;MQRankSum=-0.826;QD=5.46;ReadPosRankSum=0.349;SOR=0.704;VarDP=148 GT:AD:DP:GQ:PL:SB 1:35,37:72:59:59,0:17,18,18,19 0/1:44,32:76:99:749,0,1140:21,23,15,17 +chrX 1505007 . A G 801 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=14.58;BaseQRankSum=0.669;DP=121;ExcessHet=0.0000;FS=5.341;MQ=59.64;MQRankSum=-0.414;QD=14.58;ReadPosRankSum=0.289;SOR=0.877;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,124 0/1:26,31:57:99:.:831,0,648:15,11,13,18 +chrX 1505054 . C T 676 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=13.84;BaseQRankSum=0.331;DP=114;ExcessHet=0.0000;FS=2.387;MQ=59.60;MQRankSum=-0.463;QD=13.84;ReadPosRankSum=0.217;SOR=0.522;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,124 0/1:24,27:51:99:.:706,0,577:10,14,14,13 +chrX 1505137 . C CAAAAAAA,CA 1375.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=40,16;AS_QD=18.96,15.52;BaseQRankSum=-1.282;DP=111;ExcessHet=0.0000;FS=2.490;MQ=58.33;MQRankSum=-1.182;QD=19.93;ReadPosRankSum=-2.406;SOR=0.929;VarDP=71 GT:AD:DP:GQ:PL:SB 1:15,22,0:37:99:250,0,927:8,7,8,14 1/2:0,18,16:34:99:1165,372,603,748,0,684:0,0,16,18 +chrX 1505414 . A G 1718 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=30.67;DP=119;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.67;SOR=0.877;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,1448 1/1:0,57:57:99:.:1748,170,0:0,0,31,26 +chrX 1505526 . C A 4318 . AC=3;AF=1.00;AN=3;AS_AltDP=131;AS_QD=33.19;DP=136;ExcessHet=0.0000;FS=0.000;MQ=59.91;QD=33.19;SOR=1.061;VarDP=131 GT:AD:DP:GQ:PL:SB 1:0,61:61:99:2071,0:0,0,39,22 1/1:0,70:70:99:2277,210,0:0,0,37,33 +chrX 1505549 . G C 88 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=1.90;BaseQRankSum=-0.36;DP=137;ExcessHet=0.0000;FS=1.060;MQ=60.00;MQRankSum=0;QD=1.90;ReadPosRankSum=0.289;SOR=0.479;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 1:29,33:62:99:.:118,0:21,8,22,11 0/0:.:72:99:72:0,120,1800 +chrX 1505644 . G A 1859 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=31.48;BaseQRankSum=2.334;DP=130;ExcessHet=0.0000;FS=3.802;MQ=60.00;MQRankSum=0;QD=31.48;ReadPosRankSum=-1.617;SOR=0.843;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,939 1/1:1,59:60:99:.:1889,170,0:0,1,35,24 +chrX 1505667 . G A 2015 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=32.98;DP=129;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.98;SOR=0.976;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,939 1/1:0,62:62:99:.:2045,186,0:0,0,35,27 +chrX 1505855 . G A 2062 . AC=2;AF=0.667;AN=3;AS_AltDP=65;AS_QD=32.18;DP=134;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.18;SOR=1.078;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,939 1/1:0,65:65:99:.:2092,195,0:0,0,27,38 +chrX 1505987 . CTT C 442.97 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=21.91;BaseQRankSum=0;DP=116;ExcessHet=0.0000;FS=12.632;MQ=59.01;MQRankSum=-0.265;QD=21.91;ReadPosRankSum=0.383;SOR=1.402;VarDP=22 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,939 0/1:3,19:22:4:.:482,0,4:3,0,6,13 +chrX 1506079 . G A 1230 . AC=3;AF=1.00;AN=3;AS_AltDP=64;AS_QD=14.32;BaseQRankSum=0.711;DP=97;ExcessHet=0.0000;FS=4.621;MQ=59.65;MQRankSum=1.488;QD=14.32;ReadPosRankSum=-0.54;SOR=0.946;VarDP=88 GT:AD:DP:GQ:PL:SB 1:24,25:49:55:55,0:13,11,13,12 1/1:0,39:39:99:1205,116,0:0,0,14,25 +chrX 1506682 . CT C 885.97 . AC=2;AF=0.667;AN=3;AS_AltDP=35;AS_QD=26.43;DP=112;ExcessHet=0.0000;FS=0.000;MQ=59.67;QD=26.43;SOR=1.148;VarDP=35 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,1648 1/1:0,35:35:99:.:925,106,0:0,0,14,21 +chrX 1506815 . T C 2292 . AC=3;AF=1.00;AN=3;AS_AltDP=80;AS_QD=21.70;BaseQRankSum=0.561;DP=110;ExcessHet=0.0000;FS=4.268;MQ=57.13;MQRankSum=-0.318;QD=21.70;ReadPosRankSum=-0.98;SOR=0.539;VarDP=107 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:27,36:63:99:.:.:364,0:.:11,16,20,16 1|1:0,44:44:99:0|1:1506815_T_C:1958,132,0:1506815:0,0,22,22 +chrX 1506823 . A G 4676 . AC=3;AF=1.00;AN=3;AS_AltDP=106;AS_QD=26.52;DP=111;ExcessHet=0.0000;FS=0.000;MQ=56.91;QD=44.40;SOR=0.731;VarDP=106 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,62:62:99:.:.:2748,0:.:0,0,31,31 1|1:0,44:44:99:0|1:1506815_T_C:1958,132,0:1506815:0,0,23,21 +chrX 1506878 . G T 3510 . AC=3;AF=1.00;AN=3;AS_AltDP=107;AS_QD=33.08;DP=108;ExcessHet=0.0000;FS=0.000;MQ=55.92;QD=33.08;SOR=0.830;VarDP=107 GT:AD:DP:GQ:PL:SB 1:0,65:65:99:2169,0:0,0,40,25 1/1:0,42:42:99:1371,126,0:0,0,17,25 +chrX 1506968 . G A 1513 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=30.25;DP=108;ExcessHet=0.0000;FS=0.000;MQ=59.07;QD=30.25;SOR=1.201;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:12:56:0,12 1/1:0,51:51:99:.:1543,152,0:0,0,20,31 +chrX 1507025 . C CCCCATGGCTAAAGTTAAGATGCAATTTAGGTGGAAGCGA,CCCCATGGCTAAAGTTAAGATGCAATTTAGTTGGAAGCGA 4902.97 . AC=0,3;AF=0.00,1.00;AN=3;AS_AltDP=3,92;AS_QD=29.50,28.60;DP=122;ExcessHet=0.0000;FS=0.000;MQ=59.89;QD=52.02;SOR=0.714;VarDP=95 GT:AD:DP:GQ:PL:SB 2:0,3,43:46:99:2747,1396,0:0,0,20,26 2/2:0,0,49:49:99:2195,2199,2202,144,147,0:0,0,27,22 +chrX 1507164 . T C 1652 . AC=3;AF=1.00;AN=3;AS_AltDP=76;AS_QD=16.17;BaseQRankSum=3.097;DP=108;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=16.17;ReadPosRankSum=-0.875;SOR=0.746;VarDP=104 GT:AD:DP:GQ:PL:SB 1:28,32:60:99:247,0:14,14,16,16 1/1:0,44:44:99:1435,131,0:0,0,23,21 +chrX 1507210 . G C 1996 . AC=3;AF=1.00;AN=3;AS_AltDP=82;AS_QD=19.11;BaseQRankSum=1.81;DP=109;ExcessHet=0.0000;FS=11.888;MQ=60.00;MQRankSum=0;QD=19.11;ReadPosRankSum=1.76;SOR=0.937;VarDP=106 GT:AD:DP:GQ:PL:SB 1:23,29:52:99:234,0:9,14,19,10 1/1:1,53:54:99:1792,128,0:0,1,30,23 +chrX 1507317 . A G 226 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=6.56;BaseQRankSum=-1.618;DP=98;ExcessHet=0.0000;FS=1.294;MQ=60.00;MQRankSum=0;QD=6.56;ReadPosRankSum=-0.491;SOR=0.399;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 1:15,24:39:99:.:256,0:9,6,12,12 0/0:.:57:72:57:0,72,1419 +chrX 1507351 . T G 1697 . AC=1;AF=0.333;AN=3;AS_AltDP=53;AS_QD=32.58;DP=112;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.58;SOR=0.808;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,53:53:99:.:1727,0:0,0,28,25 0/0:.:57:72:57:0,72,1419 +chrX 1507378 . C G 1796 . AC=1;AF=0.333;AN=3;AS_AltDP=56;AS_QD=32.61;DP=114;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.61;SOR=0.841;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,56:56:99:.:1826,0:0,0,30,26 0/0:.:57:72:57:0,72,1419 +chrX 1508601 . CATCT C 252.97 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=4.95;BaseQRankSum=-0.836;DP=121;ExcessHet=0.0000;FS=5.239;MQ=57.73;MQRankSum=-3.027;QD=4.95;ReadPosRankSum=0.102;SOR=0.850;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 1:26,33:59:99:.:292,0:15,11,14,19 0/0:.:57:72:57:0,72,1419 +chrX 1508704 . TTCTATCTA T,TTCTA 1010.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=16,10;AS_QD=29.34,31.42;DP=101;ExcessHet=0.0000;FS=0.000;MQ=50.26;QD=40.38;SOR=1.022;VarDP=26 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:53:99:53:0,919,919 1/2:0,16,10:26:99:.:1050,419,483,629,0,598:0,0,15,11 +chrX 1508853 . TCATC T 854.97 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=19.02;BaseQRankSum=-0.128;DP=111;ExcessHet=0.0000;FS=8.463;MQ=50.02;MQRankSum=-3.554;QD=19.02;ReadPosRankSum=0.759;SOR=0.459;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:53:99:53:0,919 0/1:23,24:47:99:.:894,0,858:16,7,11,13 +chrX 1509002 . TCATCCATC T,TCATCCATCCATC,TCATCCATCCATCCATC,TCATTCATCCATCCATC 2414.97 . AC=0,1,1,0;AF=0.00,0.333,0.333,0.00;AN=3;AS_AltDP=4,35,23,0;AS_QD=0.00,28.25,23.34,13.33;BaseQRankSum=-1.546;DP=133;ExcessHet=0.0000;FS=3.608;MQ=57.25;MQRankSum=-0.285;QD=30.68;ReadPosRankSum=0.539;SOR=0.368;VarDP=80 GT:AD:DP:GQ:PL:SB 2:0,4,35,0,0:39:99:1497,1896,0,1951,1951:0,0,18,21 0/3:18,0,0,23,0:41:99:957,927,1825,927,1825,1825,0,794,794,691,717,1682,1682,764,1822:11,7,13,10 +chrX 1509099 . GTATCTATC G,GTATCTATCTATC 1423.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=20,17;AS_QD=29.43,36.57;DP=119;ExcessHet=0.0000;FS=0.000;MQ=59.55;QD=39.54;SOR=2.242;VarDP=37 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,1165,1165 1/2:0,20,17:37:99:.:1463,713,780,755,0,718:0,0,9,28 +chrX 1509161 . TTCTATCTA T,TTCTA,TTCTATCTATCTATCTATCTA 1880.97 . AC=0,1,1;AF=0.00,0.333,0.333;AN=3;AS_AltDP=15,24,24;AS_QD=12.34,18.34,15.95;BaseQRankSum=1.83;DP=120;ExcessHet=0.0000;FS=1.798;MQ=59.17;MQRankSum=-1.1;QD=20.21;ReadPosRankSum=-0.518;SOR=0.501;VarDP=95 GT:AD:DP:GQ:PL:SB 2:1,15,24,0:40:99:1027,447,0,1100:0,0,17,22 0/3:31,0,0,24:55:99:893,1029,2566,1029,2566,2566,0,1308,1308,1190:12,19,11,13 +chrX 1509263 . CATCT C 89.97 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=3.39;BaseQRankSum=0.616;DP=100;ExcessHet=0.0000;FS=4.815;MQ=58.83;MQRankSum=-1.322;QD=3.39;ReadPosRankSum=-0.427;SOR=0.929;VarDP=38 GT:AD:DP:GQ:MIN_DP:PL:SB 1:18,20:38:99:.:129,0:7,11,12,8 0/0:.:55:51:55:0,51,1196 +chrX 1509374 . TTCTATCTATCTATCTATCTA T,TTCTATCTATCTATCTA,TTCTATCTATCTATCTATCTATCTA,TCCATTTCTATCTATCTATCTATCTATCTA 1167.97 . AC=1,1,1,0;AF=0.333,0.333,0.333,0.00;AN=3;AS_AltDP=22,14,13,0;AS_QD=4.73,17.34,15.84,0.00;BaseQRankSum=0;DP=99;ExcessHet=0.0000;FS=13.020;MQ=54.96;MQRankSum=-2.123;QD=18.01;ReadPosRankSum=-1.914;SOR=1.492;VarDP=67 GT:AD:DP:GQ:PL:SB 1:18,22,0,0,0:40:99:189,0,987,987,987:11,7,9,13 2/3:0,0,14,13,0:27:99:1018,1032,1120,463,544,501,527,576,0,537,1071,1121,542,585,1778:0,0,7,20 +chrX 1509421 . T TTATC 663.97 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=25.11;BaseQRankSum=0.253;DP=86;ExcessHet=0.0000;FS=10.089;MQ=48.86;MQRankSum=-0.125;QD=25.11;ReadPosRankSum=0.36;SOR=0.058;VarDP=28 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:52:99:52:0,1407 0/1:10,18:28:99:.:703,0,361:1,9,8,10 +chrX 1509515 . TCATC TCATCCATC,T 294.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=17,7;AS_QD=2.14,5.68;BaseQRankSum=0.994;DP=85;ExcessHet=0.0000;FS=1.034;MQ=51.11;MQRankSum=-3.261;QD=5.86;ReadPosRankSum=0.605;SOR=0.978;VarDP=57 GT:AD:DP:GQ:PL:SB 1:15,17,0:32:99:107,0,759:6,9,6,11 0/2:18,0,7:25:99:227,282,1026,0,744,723:10,8,4,3 +chrX 1509668 . T TCATC 524.97 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=25.64;BaseQRankSum=0;DP=83;ExcessHet=0.0000;FS=19.633;MQ=55.08;MQRankSum=-0.261;QD=25.64;ReadPosRankSum=-1.811;SOR=3.901;VarDP=22 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:52:99:52:0,199 0/1:8,14:22:99:.:564,0,294:3,5,13,1 +chrX 1509751 . G GTCTATCTATCTATCTATCTA 713.97 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=20.92;BaseQRankSum=-1.901;DP=105;ExcessHet=0.0000;FS=1.301;MQ=57.84;MQRankSum=-2.624;QD=20.92;ReadPosRankSum=-0.867;SOR=0.459;VarDP=36 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:52:99:52:0,199 0/1:15,21:36:99:.:753,0,549:9,6,11,10 +chrX 1509982 . C CATCT 983.97 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=10.77;BaseQRankSum=2.457;DP=102;ExcessHet=0.0000;FS=0.000;MQ=59.86;MQRankSum=0;QD=10.77;ReadPosRankSum=0.816;SOR=0.730;VarDP=95 GT:AD:DP:GQ:PL:SB 1:23,25:48:99:109,0:17,6,19,6 0/1:21,26:47:99:914,0,774:12,9,15,11 +chrX 1511536 . A T 1161 . AC=2;AF=0.667;AN=3;AS_AltDP=72;AS_QD=9.23;BaseQRankSum=0.058;DP=133;ExcessHet=0.0000;FS=3.170;MQ=60.00;MQRankSum=0;QD=9.23;ReadPosRankSum=0.412;SOR=0.472;VarDP=129 GT:AD:DP:GQ:PL:SB 1:31,45:76:99:442,0:19,12,25,20 0/1:26,27:53:99:749,0,718:14,12,12,15 +chrX 1511712 . C T 1002 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=8.53;BaseQRankSum=0.405;DP=128;ExcessHet=0.0000;FS=1.446;MQ=60.00;MQRankSum=0;QD=8.53;ReadPosRankSum=-0.051;SOR=0.542;VarDP=121 GT:AD:DP:GQ:PL:SB 1:28,33:61:99:206,0:14,14,14,19 0/1:31,29:60:99:826,0,894:18,13,17,12 +chrX 1512546 . C CA,CAA 1340.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=42,19;AS_QD=25.98,30.16;BaseQRankSum=2.209;DP=117;ExcessHet=0.0000;FS=0.000;MQ=58.89;MQRankSum=-0.198;QD=22.26;ReadPosRankSum=0.61;SOR=0.563;VarDP=62 GT:AD:DP:GQ:PL:SB 2:0,6,19:25:99:705,263,0:0,0,17,8 1/1:1,36,0:37:96:675,96,0,679,105,687:1,0,22,14 +chrX 1512836 . AATTATT A 3763.97 . AC=3;AF=1.00;AN=3;AS_AltDP=86;AS_QD=30.24;DP=119;ExcessHet=0.0000;FS=0.000;MQ=59.83;QD=44.22;SOR=1.065;VarDP=86 GT:AD:DP:GQ:PL:SB 1:0,48:48:99:2103,0:0,0,23,25 1/1:0,38:38:99:1700,115,0:0,0,13,25 +chrX 1512901 . C G 4328 . AC=3;AF=1.00;AN=3;AS_AltDP=100;AS_QD=29.44;DP=101;ExcessHet=0.0000;FS=0.000;MQ=59.54;QD=43.58;SOR=0.818;VarDP=100 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,48:48:99:.:.:2099,0:.:0,0,25,23 1|1:0,52:52:99:0|1:1512901_C_G:2259,156,0:1512901:0,0,28,24 +chrX 1512926 . G A 4878 . AC=3;AF=1.00;AN=3;AS_AltDP=110;AS_QD=25.07;DP=110;ExcessHet=0.0000;FS=0.000;MQ=59.37;QD=44.62;SOR=0.931;VarDP=110 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,52:52:99:.:.:2329,0:.:0,0,30,22 1|1:0,58:58:99:0|1:1512901_C_G:2579,175,0:1512901:0,0,31,27 +chrX 1512928 . A G 4844 . AC=3;AF=1.00;AN=3;AS_AltDP=109;AS_QD=27.43;DP=109;ExcessHet=0.0000;FS=0.000;MQ=59.36;QD=44.72;SOR=0.912;VarDP=109 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,52:52:99:.:.:2329,0:.:0,0,30,22 1|1:0,57:57:99:0|1:1512901_C_G:2545,172,0:1512901:0,0,30,27 +chrX 1513022 . C T 2393 . AC=3;AF=1.00;AN=3;AS_AltDP=74;AS_QD=32.74;DP=82;ExcessHet=0.0000;FS=0.000;MQ=59.10;QD=32.74;SOR=1.457;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,42:42:99:1347,0:0,0,12,30 1/1:0,32:32:96:1076,96,0:0,0,14,18 +chrX 1513207 . T C 618 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=6.42;BaseQRankSum=1.201;DP=106;ExcessHet=0.0000;FS=0.000;MQ=59.91;MQRankSum=0;QD=6.42;ReadPosRankSum=0.014;SOR=0.714;VarDP=101 GT:AD:DP:GQ:PL:SB 1:31,31:62:71:71,0:15,16,17,14 0/1:16,23:39:99:577,0,414:10,6,12,11 +chrX 1513214 . A G 3862 . AC=3;AF=1.00;AN=3;AS_AltDP=102;AS_QD=30.32;DP=107;ExcessHet=0.0000;FS=0.000;MQ=59.91;QD=38.16;SOR=0.815;VarDP=102 GT:AD:DP:GQ:PL:SB 1:0,63:63:99:2355,0:0,0,32,31 1/1:0,39:39:99:1537,117,0:0,0,22,17 +chrX 1513246 . C CT 2775.97 . AC=3;AF=1.00;AN=3;AS_AltDP=101;AS_QD=27.87;DP=111;ExcessHet=0.0000;FS=0.000;MQ=59.92;QD=27.87;SOR=0.713;VarDP=101 GT:AD:DP:GQ:PL:SB 1:0,57:57:99:1581,0:0,0,27,30 1/1:0,44:44:99:1234,132,0:0,0,23,21 +chrX 1513488 . C G 618 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=6.17;BaseQRankSum=0.584;DP=107;ExcessHet=0.0000;FS=7.764;MQ=59.92;MQRankSum=0.948;QD=6.17;ReadPosRankSum=0.384;SOR=0.280;VarDP=105 GT:AD:DP:GQ:PL:SB 1:24,28:52:28:28,0:7,17,14,14 0/1:29,24:53:99:620,0,779:11,18,11,13 +chrX 1514046 . C T 945 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=12.66;BaseQRankSum=0.355;DP=136;ExcessHet=0.0000;FS=3.043;MQ=60.00;MQRankSum=0;QD=12.66;ReadPosRankSum=0.127;SOR=0.414;VarDP=77 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:57:99:57:0,1379 0/1:40,37:77:99:.:975,0,1059:16,24,18,19 +chrX 1514180 . C T 3610 . AC=3;AF=1.00;AN=3;AS_AltDP=111;AS_QD=32.79;DP=115;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.79;SOR=0.711;VarDP=111 GT:AD:DP:GQ:PL:SB 1:0,60:60:99:1960,0:0,0,31,29 1/1:0,51:51:99:1680,153,0:0,0,25,26 +chrX 1514329 . TCTTTC T 69.97 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=1.82;BaseQRankSum=-2.047;DP=88;ExcessHet=0.0000;FS=2.177;MQ=59.02;MQRankSum=1.498;QD=1.82;ReadPosRankSum=0.918;SOR=0.751;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 1:29,31:60:99:.:109,0:13,16,17,14 0/0:.:22:28:19:0,28,585 +chrX 1514804 . C T 546 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=23.04;BaseQRankSum=2.655;DP=70;ExcessHet=0.0000;FS=27.681;MQ=56.97;MQRankSum=-0.098;QD=23.04;ReadPosRankSum=1.527;SOR=4.034;VarDP=25 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:33:99:33:.:.:0,193 0|1:10,15:25:99:.:0|1:1514804_C_T:576,0,349:1514804:7,3,1,14 +chrX 1514811 . T TCCTTCCCTTTC 539.97 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=24.13;BaseQRankSum=2.387;DP=69;ExcessHet=0.0000;FS=31.270;MQ=56.33;MQRankSum=0;QD=24.13;ReadPosRankSum=0.269;SOR=4.032;VarDP=24 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:33:99:33:.:.:0,193 0|1:9,15:24:99:.:0|1:1514804_C_T:579,0,320:1514804:7,2,1,14 +chrX 1514827 . C T 350 . AC=1;AF=0.333;AN=3;AS_AltDP=10;AS_QD=20.00;BaseQRankSum=2.122;DP=64;ExcessHet=0.0000;FS=22.614;MQ=55.94;MQRankSum=0.23;QD=20.00;ReadPosRankSum=-0.979;SOR=3.224;VarDP=19 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:33:99:33:.:.:0,193 0|1:9,10:19:99:.:0|1:1514804_C_T:380,0,335:1514804:7,2,1,9 +chrX 1514835 . T TTCCCTTTTCCTTTCCTTCCCTTCCC,TTCCCTTCCC 713.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=10,9;AS_QD=25.56,25.21;BaseQRankSum=-0.723;DP=60;ExcessHet=0.0000;FS=1.958;MQ=55.11;MQRankSum=0.349;QD=30.12;ReadPosRankSum=-0.155;SOR=0.368;VarDP=25 GT:AD:DP:GQ:PL:SB 1:6,6,0:12:38:38,0,249:1,5,1,5 1/2:0,4,9:13:99:715,370,344,168,0,252:0,0,5,8 +chrX 1514883 . TCTCCCCTCCCCTTCCC T 387.97 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=26.69;BaseQRankSum=-0.774;DP=38;ExcessHet=0.0000;FS=5.119;MQ=57.75;MQRankSum=-0.539;QD=26.69;ReadPosRankSum=-1.567;SOR=0.419;VarDP=16 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:16:40:8:0,40 0/1:5,11:16:99:.:427,0,177:1,4,6,5 +chrX 1515333 . T C 676 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=11.97;BaseQRankSum=-0.295;DP=109;ExcessHet=0.0000;FS=5.293;MQ=60.00;MQRankSum=0;QD=11.97;ReadPosRankSum=-1.507;SOR=1.244;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:47:99:47:0,391 0/1:32,27:59:99:.:706,0,895:15,17,17,10 +chrX 1515376 . CT C,CTT 754.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=42,22;AS_QD=8.73,5.95;BaseQRankSum=1.37;DP=133;ExcessHet=0.0000;FS=1.666;MQ=59.49;MQRankSum=0.839;QD=7.86;ReadPosRankSum=0.672;SOR=0.529;VarDP=101 GT:AD:DP:GQ:PL:SB 2:0,18,22:40:99:351,104,0:0,0,21,19 0/1:37,24,0:61:99:443,0,779,554,852,1406:22,15,14,10 +chrX 1515425 . G T 883 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=14.49;BaseQRankSum=-1.361;DP=116;ExcessHet=0.0000;FS=5.062;MQ=59.56;MQRankSum=-0.862;QD=14.49;ReadPosRankSum=1.861;SOR=0.604;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:50:39:47:0,39 0/1:28,35:63:99:.:913,0,983:17,11,16,19 +chrX 1515448 . C T 685 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=12.12;BaseQRankSum=2.977;DP=109;ExcessHet=0.0000;FS=7.160;MQ=59.52;MQRankSum=0.922;QD=12.12;ReadPosRankSum=-0.321;SOR=1.082;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:50:39:47:0,39 0/1:33,26:59:99:.:715,0,1276:14,19,16,10 +chrX 1515801 . A C 87 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=1.72;BaseQRankSum=-2.404;DP=139;ExcessHet=0.0000;FS=0.908;MQ=60.00;MQRankSum=0;QD=1.72;ReadPosRankSum=-0.197;SOR=0.571;VarDP=68 GT:AD:DP:GQ:MIN_DP:PL:SB 1:31,37:68:99:.:117,0:17,14,19,18 0/0:.:67:99:67:0,120,1800 +chrX 1515812 . C T 548 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=9.17;BaseQRankSum=0.474;DP=125;ExcessHet=0.0000;FS=2.195;MQ=60.00;MQRankSum=0;QD=9.17;ReadPosRankSum=-1.214;SOR=0.434;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,1800 0/1:40,23:63:99:.:578,0,1131:24,16,12,11 +chrX 1515830 . G A 167 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=3.46;BaseQRankSum=-0.373;DP=123;ExcessHet=0.0000;FS=1.032;MQ=60.00;MQRankSum=0;QD=3.46;ReadPosRankSum=0.507;SOR=0.534;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 1:25,32:57:99:.:197,0:16,9,19,13 0/0:.:63:99:63:0,118,1573 +chrX 1515946 . T TG 362.97 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=9.57;BaseQRankSum=-1.291;DP=90;ExcessHet=0.0000;FS=5.229;MQ=59.74;MQRankSum=-1.528;QD=9.57;ReadPosRankSum=-0.474;SOR=1.769;VarDP=42 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:45:99:45:.:.:0,158 0|1:30,12:42:99:.:0|1:1515946_T_TG:402,0,1183:1515946:16,14,9,3 +chrX 1515947 . C G 400 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=9.77;BaseQRankSum=2.113;DP=92;ExcessHet=0.0000;FS=7.035;MQ=59.75;MQRankSum=-1.494;QD=9.77;ReadPosRankSum=-0.376;SOR=1.833;VarDP=44 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:45:99:45:.:.:0,158 0|1:31,13:44:99:.:0|1:1515946_T_TG:430,0,1210:1515946:17,14,10,3 +chrX 1515954 . T G 369 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=9.28;BaseQRankSum=0.041;DP=90;ExcessHet=0.0000;FS=7.857;MQ=59.74;MQRankSum=-1.555;QD=9.28;ReadPosRankSum=-0.265;SOR=2.116;VarDP=43 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:45:99:45:.:.:0,158 0|1:31,12:43:99:.:0|1:1515946_T_TG:399,0,1222:1515946:18,13,10,2 +chrX 1516020 . TAAA T,CAAA 1331 . AC=2,0;AF=0.667,0.00;AN=3;AS_AltDP=46,1;AS_QD=16.40,0.00;BaseQRankSum=0.765;DP=100;ExcessHet=0.0000;FS=1.835;MQ=59.01;MQRankSum=-1.415;QD=16.20;ReadPosRankSum=0.995;SOR=0.998;VarDP=84 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:11,23,1:35:99:.:.:495,0,1000:.:3,8,8,15 0|1:26,23,0:49:99:0|1:1516020_TAAA_T:866,0,1001,944,1070,2014:1516020:14,12,10,13 +chrX 1516038 . A G 1445 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=15.69;BaseQRankSum=-0.465;DP=97;ExcessHet=0.0000;FS=3.910;MQ=59.27;MQRankSum=-1.385;QD=15.69;ReadPosRankSum=0.408;SOR=1.139;VarDP=94 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:12,26:38:99:.:.:572,0:.:4,8,9,17 0|1:31,25:56:99:0|1:1516020_TAAA_T:903,0,1148:1516020:17,14,11,14 +chrX 1516216 . C CA,CAAA 3094.97 . AC=1,2;AF=0.333,0.667;AN=3;AS_AltDP=31,72;AS_QD=30.88,35.23;BaseQRankSum=2.214;DP=116;ExcessHet=0.0000;FS=3.836;MQ=59.86;MQRankSum=0;QD=30.13;ReadPosRankSum=0.315;SOR=0.845;VarDP=104 GT:AD:DP:GQ:PL:SB 1:1,31,23:55:99:988,0,347:0,1,33,21 2/2:0,0,49:49:99:2146,2146,2146,147,147,0:0,0,28,21 +chrX 1516298 . CT C 1192.97 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=18.67;BaseQRankSum=1.425;DP=123;ExcessHet=0.0000;FS=3.399;MQ=60.00;MQRankSum=0;QD=18.67;ReadPosRankSum=-0.614;SOR=0.856;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:58:39:56:0,39 0/1:29,37:66:99:.:1232,0,943:13,16,21,16 +chrX 1516393 . G T 2542 . AC=2;AF=0.667;AN=3;AS_AltDP=86;AS_QD=22.17;BaseQRankSum=1.594;DP=123;ExcessHet=0.0000;FS=0.000;MQ=59.05;MQRankSum=-0.41;QD=22.17;ReadPosRankSum=-0.729;SOR=0.681;VarDP=116 GT:AD:DP:GQ:PL:SB 1:2,52:54:99:1673,0:1,1,24,28 0/1:28,34:62:99:899,0,779:11,17,11,23 +chrX 1516433 . A G 1497 . AC=1;AF=0.333;AN=3;AS_AltDP=46;AS_QD=33.20;DP=111;ExcessHet=0.0000;FS=0.000;MQ=59.16;QD=33.20;SOR=1.085;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,46:46:99:.:1527,0:0,0,19,27 0/0:.:61:99:61:0,109,1800 +chrX 1516459 . T C 3274 . AC=2;AF=0.667;AN=3;AS_AltDP=78;AS_QD=31.47;BaseQRankSum=0.424;DP=105;ExcessHet=0.0000;FS=4.370;MQ=59.14;MQRankSum=-1.851;QD=31.47;ReadPosRankSum=1.142;SOR=1.230;VarDP=105 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,54:54:99:.:.:2378,0:.:0,0,23,31 0|1:27,24:51:99:0|1:1516459_T_C:926,0,1051:1516459:13,14,6,18 +chrX 1516468 . G A 3246 . AC=2;AF=0.667;AN=3;AS_AltDP=77;AS_QD=30.33;BaseQRankSum=0.161;DP=108;ExcessHet=0.0000;FS=7.120;MQ=58.86;MQRankSum=-1.218;QD=30.33;ReadPosRankSum=0.528;SOR=1.350;VarDP=108 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,52:52:99:.:.:2320,0:.:0,0,22,30 0|1:31,25:56:99:0|1:1516459_T_C:956,0,1226:1516459:16,15,6,19 +chrX 1516482 . G A 3235 . AC=2;AF=0.667;AN=3;AS_AltDP=79;AS_QD=29.95;BaseQRankSum=0.505;DP=110;ExcessHet=0.0000;FS=8.574;MQ=58.67;MQRankSum=-1.511;QD=29.95;ReadPosRankSum=-0.97;SOR=1.001;VarDP=109 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,53:53:99:.:.:2314,0:.:0,0,25,28 0|1:30,26:56:99:0|1:1516459_T_C:951,0,1181:1516459:17,13,7,19 +chrX 1516491 . T C 771 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=14.05;BaseQRankSum=-0.088;DP=132;ExcessHet=0.0000;FS=14.808;MQ=59.26;MQRankSum=1.498;QD=14.05;ReadPosRankSum=1.279;SOR=0.850;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:75:99:75:0,1800 0/1:27,30:57:99:.:801,0,1033:8,19,18,12 +chrX 1516736 . A G 2463 . AC=2;AF=0.667;AN=3;AS_AltDP=79;AS_QD=24.93;BaseQRankSum=-1.029;DP=103;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=24.93;ReadPosRankSum=1.733;SOR=0.680;VarDP=100 GT:AD:DP:GQ:PL:SB 1:0,61:61:99:2009,0:0,0,31,30 0/1:21,18:39:99:484,0,613:11,10,10,8 +chrX 1516772 . G A 2066 . AC=2;AF=0.667;AN=3;AS_AltDP=73;AS_QD=22.06;BaseQRankSum=1.997;DP=100;ExcessHet=0.0000;FS=0.909;MQ=59.44;MQRankSum=0;QD=22.06;ReadPosRankSum=-0.616;SOR=0.830;VarDP=95 GT:AD:DP:GQ:PL:SB 1:3,50:53:99:1507,0:1,2,27,23 0/1:19,23:42:99:589,0,463:11,8,15,8 +chrX 1517112 . T G 3332 . AC=2;AF=0.667;AN=3;AS_AltDP=78;AS_QD=33.29;BaseQRankSum=-0.614;DP=107;ExcessHet=0.0000;FS=7.915;MQ=54.74;MQRankSum=-3.216;QD=33.29;ReadPosRankSum=0.719;SOR=0.741;VarDP=101 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,59:59:99:.:.:2633,0:.:0,0,28,31 0|1:23,19:42:99:0|1:1517112_T_G:729,0,909:1517112:14,9,6,13 +chrX 1517113 . A G,* 3332 . AC=2,0;AF=0.667,0.00;AN=3;AS_AltDP=78,2;AS_QD=33.29,0.00;BaseQRankSum=-0.179;DP=106;ExcessHet=0.0000;FS=8.070;MQ=54.69;MQRankSum=-3.011;QD=32.64;ReadPosRankSum=0.252;SOR=0.810;VarDP=103 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,59,0:59:99:.:.:2633,0,2633:.:0,0,28,31 0|1:23,19,2:44:99:0|1:1517112_T_G:729,0,909,758,926,1719:1517112:14,9,6,15 +chrX 1517118 . T C 3441 . AC=2;AF=0.667;AN=3;AS_AltDP=80;AS_QD=33.70;BaseQRankSum=0.704;DP=105;ExcessHet=0.0000;FS=8.070;MQ=54.61;MQRankSum=-3.11;QD=33.70;ReadPosRankSum=0.209;SOR=0.810;VarDP=103 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,60:60:99:.:.:2700,0:.:0,0,27,33 0|1:23,20:43:99:0|1:1517112_T_G:771,0,906:1517112:14,9,7,13 +chrX 1517119 . G A,* 3438 . AC=2,0;AF=0.667,0.00;AN=3;AS_AltDP=80,2;AS_QD=33.67,0.00;BaseQRankSum=1.148;DP=105;ExcessHet=0.0000;FS=8.113;MQ=54.61;MQRankSum=-2.833;QD=33.03;ReadPosRankSum=-0.282;SOR=0.877;VarDP=105 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,59,0:59:99:.:.:2655,0,2655:.:0,0,26,33 0|1:23,21,2:46:99:0|1:1517112_T_G:813,0,903,842,926,1803:1517112:14,9,8,15 +chrX 1517122 . T C 3474 . AC=2;AF=0.667;AN=3;AS_AltDP=81;AS_QD=33.06;BaseQRankSum=2.579;DP=108;ExcessHet=0.0000;FS=5.984;MQ=54.77;MQRankSum=-3.055;QD=33.06;ReadPosRankSum=0.195;SOR=0.702;VarDP=106 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,59:59:99:.:.:2655,0:.:0,0,26,33 0|1:25,22:47:99:0|1:1517112_T_G:849,0,984:1517112:15,10,10,12 +chrX 1517137 . GCT G,ACT 3613 . AC=0,2;AF=0.00,0.667;AN=3;AS_AltDP=2,78;AS_QD=32.76,34.70;BaseQRankSum=1.974;DP=114;ExcessHet=0.0000;FS=13.277;MQ=55.13;MQRankSum=-3.0;QD=34.05;ReadPosRankSum=-0.999;SOR=0.647;VarDP=107 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 2:0,2,51:53:99:.:.:2591,1641,0:.:0,0,23,30 0|2:27,0,27:54:99:0|1:1517112_T_G:1052,1134,2267,0,1134,1052:1517112:18,9,12,15 +chrX 1517138 . C *,A 3526 . AC=0,2;AF=0.00,0.667;AN=3;AS_AltDP=4,78;AS_QD=0.00,34.19;BaseQRankSum=0.055;DP=111;ExcessHet=0.0000;FS=11.526;MQ=54.99;MQRankSum=-2.8;QD=32.93;ReadPosRankSum=-1.328;SOR=0.735;VarDP=108 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 2:0,2,51:53:99:.:.:2501,1641,0:.:0,0,23,30 0|2:26,2,27:55:99:0|1:1517112_T_G:1055,1094,2181,0,1052,1010:1517112:17,9,12,17 +chrX 1517158 . C G 3842 . AC=2;AF=0.667;AN=3;AS_AltDP=90;AS_QD=33.09;BaseQRankSum=1.719;DP=119;ExcessHet=0.0000;FS=7.300;MQ=55.52;MQRankSum=-3.583;QD=33.09;ReadPosRankSum=-0.763;SOR=0.245;VarDP=117 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,65:65:99:.:.:2904,0:.:0,0,33,32 0|1:27,25:52:99:0|1:1517112_T_G:968,0,1048:1517112:18,9,12,13 +chrX 1517165 . C A 4069 . AC=2;AF=0.667;AN=3;AS_AltDP=98;AS_QD=32.53;BaseQRankSum=2.508;DP=133;ExcessHet=0.0000;FS=10.785;MQ=55.91;MQRankSum=0.549;QD=32.53;ReadPosRankSum=1.632;SOR=0.181;VarDP=126 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,71:72:99:.:.:3067,0:.:1,0,36,35 0|1:27,27:54:99:0|1:1517112_T_G:1032,0,1032:1517112:19,8,14,13 +chrX 1517862 . G A 2742 . AC=2;AF=0.667;AN=3;AS_AltDP=89;AS_QD=24.32;BaseQRankSum=-0.482;DP=118;ExcessHet=0.0000;FS=5.982;MQ=59.98;MQRankSum=0;QD=24.32;ReadPosRankSum=-0.101;SOR=0.296;VarDP=114 GT:AD:DP:GQ:PL:SB 1:0,62:62:99:2039,0:0,0,36,26 0/1:25,27:52:99:733,0,653:18,7,16,11 +chrX 1517925 . A G 2115 . AC=2;AF=0.667;AN=3;AS_AltDP=76;AS_QD=21.03;BaseQRankSum=1.67;DP=106;ExcessHet=0.0000;FS=9.888;MQ=59.40;MQRankSum=1.267;QD=21.03;ReadPosRankSum=0.503;SOR=0.188;VarDP=102 GT:AD:DP:GQ:PL:SB 1:4,51:55:99:1512,0:3,1,31,20 0/1:22,25:47:99:633,0,594:17,5,13,12 +chrX 1517979 . C T 2602 . AC=2;AF=0.667;AN=3;AS_AltDP=87;AS_QD=21.93;BaseQRankSum=2.01;DP=123;ExcessHet=0.0000;FS=1.644;MQ=59.12;MQRankSum=-1.041;QD=21.93;ReadPosRankSum=1.176;SOR=0.563;VarDP=120 GT:AD:DP:GQ:PL:SB 1:0,56:56:99:1821,0:0,0,27,29 0/1:33,31:64:99:811,0,770:18,15,16,15 +chrX 1518065 . T C 2477 . AC=2;AF=0.667;AN=3;AS_AltDP=88;AS_QD=20.55;BaseQRankSum=-2.097;DP=126;ExcessHet=0.0000;FS=1.690;MQ=59.78;MQRankSum=0.986;QD=20.55;ReadPosRankSum=-1.084;SOR=0.903;VarDP=122 GT:AD:DP:GQ:PL:SB 1:0,57:57:99:1730,0:0,0,19,38 0/1:34,31:65:99:777,0,957:13,21,11,20 +chrX 1518119 . TA T 2436.97 . AC=2;AF=0.667;AN=3;AS_AltDP=85;AS_QD=21.53;BaseQRankSum=1.079;DP=134;ExcessHet=0.0000;FS=0.000;MQ=59.85;MQRankSum=1.45;QD=21.53;ReadPosRankSum=-0.804;SOR=0.744;VarDP=115 GT:AD:DP:GQ:PL:SB 1:0,55:55:99:1718,0:0,0,33,22 0/1:30,30:60:99:758,0,753:17,13,16,14 +chrX 1518232 . C T 2716 . AC=2;AF=0.667;AN=3;AS_AltDP=93;AS_QD=20.96;BaseQRankSum=-0.5;DP=135;ExcessHet=0.0000;FS=1.623;MQ=59.75;MQRankSum=0.371;QD=20.96;ReadPosRankSum=1.319;SOR=0.520;VarDP=131 GT:AD:DP:GQ:PL:SB 1:1,66:67:99:2094,0:1,0,42,24 0/1:37,27:64:99:652,0,995:25,12,17,10 +chrX 1518425 . C CA 1844.97 . AC=2;AF=0.667;AN=3;AS_AltDP=81;AS_QD=17.28;BaseQRankSum=-1.301;DP=145;ExcessHet=0.0000;FS=5.730;MQ=58.98;MQRankSum=0.664;QD=17.28;ReadPosRankSum=-0.926;SOR=1.339;VarDP=109 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,56:56:99:.:.:1412,0:.:0,0,22,34 0|1:28,25:53:99:0|1:1518425_C_CA:472,0,1077:1518425:14,14,8,17 +chrX 1518438 . AT A 1140.97 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=18.73;BaseQRankSum=0.537;DP=126;ExcessHet=0.0000;FS=4.987;MQ=58.53;MQRankSum=-0.823;QD=18.73;ReadPosRankSum=-0.162;SOR=0.658;VarDP=63 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:99:62:.:.:0,1607 0|1:32,31:63:99:.:1|0:1518425_C_CA:1180,0,1228:1518425:13,19,17,14 +chrX 1518441 . AT A 1140.97 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=18.73;BaseQRankSum=-0.797;DP=126;ExcessHet=0.0000;FS=4.987;MQ=58.53;MQRankSum=-0.823;QD=18.73;ReadPosRankSum=-0.096;SOR=0.658;VarDP=63 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:99:62:.:.:0,1607 0|1:32,31:63:99:.:1|0:1518425_C_CA:1180,0,1228:1518425:13,19,17,14 +chrX 1518557 . T G 2229 . AC=2;AF=0.667;AN=3;AS_AltDP=79;AS_QD=20.92;BaseQRankSum=-2.042;DP=115;ExcessHet=0.0000;FS=9.310;MQ=60.00;MQRankSum=0;QD=20.92;ReadPosRankSum=0.32;SOR=0.208;VarDP=108 GT:AD:DP:GQ:PL:SB 1:0,52:52:99:1608,0:0,0,30,22 0/1:29,27:56:99:651,0,796:22,7,16,11 +chrX 1520114 . G A 2041 . AC=2;AF=0.667;AN=3;AS_AltDP=67;AS_QD=20.50;BaseQRankSum=0.108;DP=107;ExcessHet=0.0000;FS=2.766;MQ=60.00;MQRankSum=0;QD=20.50;ReadPosRankSum=0.402;SOR=0.604;VarDP=101 GT:AD:DP:GQ:PL:SB 1:0,52:52:99:1726,0:0,0,26,26 0/1:34,15:49:99:345,0,950:15,19,9,6 +chrX 1521033 . TC T 1663.97 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=19.57;BaseQRankSum=0.975;DP=102;ExcessHet=0.0000;FS=14.532;MQ=58.04;MQRankSum=0.975;QD=19.57;ReadPosRankSum=1.895;SOR=0.315;VarDP=87 GT:AD:DP:GQ:PL:SB 1:0,50:50:99:1595,0:0,0,28,22 0/1:26,11:37:99:108,0,726:19,7,1,10 +chrX 1521236 . C T 368 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=8.12;BaseQRankSum=1.454;DP=113;ExcessHet=0.0000;FS=0.000;MQ=59.76;MQRankSum=-1.329;QD=8.12;ReadPosRankSum=0.137;SOR=0.656;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,998 0/1:32,17:49:99:.:398,0,835:13,19,7,10 +chrX 1521478 . T C 2879 . AC=2;AF=0.667;AN=3;AS_AltDP=97;AS_QD=24.65;BaseQRankSum=-2.58;DP=119;ExcessHet=0.0000;FS=12.851;MQ=60.00;MQRankSum=0;QD=24.65;ReadPosRankSum=-0.767;SOR=0.827;VarDP=118 GT:AD:DP:GQ:PL:SB 1:0,68:68:99:2147,0:0,0,41,27 0/1:21,29:50:99:762,0,580:7,14,16,13 +chrX 1521680 . G T 3329 . AC=2;AF=0.667;AN=3;AS_AltDP=102;AS_QD=27.76;BaseQRankSum=1.215;DP=130;ExcessHet=0.0000;FS=2.072;MQ=60.00;MQRankSum=0;QD=27.76;ReadPosRankSum=1.713;SOR=0.446;VarDP=121 GT:AD:DP:GQ:PL:SB 1:0,76:76:99:2590,0:0,0,38,38 0/1:19,26:45:99:769,0,515:8,11,13,13 +chrX 1521853 . C T 421 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=9.40;BaseQRankSum=0.911;DP=124;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=9.40;ReadPosRankSum=0.517;SOR=0.656;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:72:99:72:0,927 0/1:29,19:48:99:.:451,0,744:12,17,8,11 +chrX 1521944 . C CTTTT,CTTTTTTTT,CTTTTTT 806.97 . AC=0,1,1;AF=0.00,0.333,0.333;AN=3;AS_AltDP=4,8,0;AS_QD=29.59,36.25,30.13;DP=65;ExcessHet=0.0000;FS=0.000;MQ=57.21;QD=65.08;SOR=0.223;VarDP=13 GT:AD:DP:GQ:PL:SB 2:0,4,8,0:12:99:732,106,0,505:0,0,6,6 0/3:1,0,0,0:1:8:114,8,96,72,82,130,0,44,52,36:0,1,0,0 +chrX 1522817 . G C 2800 . AC=2;AF=0.667;AN=3;AS_AltDP=91;AS_QD=23.78;BaseQRankSum=1.491;DP=121;ExcessHet=0.0000;FS=5.446;MQ=59.96;MQRankSum=-0.916;QD=23.78;ReadPosRankSum=-0.592;SOR=0.459;VarDP=119 GT:AD:DP:GQ:PL:SB 1:0,60:60:99:1970,0:0,0,31,29 0/1:28,31:59:99:860,0,716:11,17,16,15 +chrX 1523048 . G A 2542 . AC=2;AF=0.667;AN=3;AS_AltDP=80;AS_QD=26.24;BaseQRankSum=0.214;DP=104;ExcessHet=0.0000;FS=2.215;MQ=60.00;MQRankSum=0;QD=26.24;ReadPosRankSum=0.966;SOR=1.096;VarDP=98 GT:AD:DP:GQ:PL:SB 1:0,56:56:99:1916,0:0,0,19,37 0/1:18,24:42:99:656,0,445:9,9,14,10 +chrX 1523078 . A AAAAT,AAAATAAAT 2267.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=38,17;AS_QD=34.64,26.12;BaseQRankSum=-1.555;DP=115;ExcessHet=0.0000;FS=1.428;MQ=59.67;MQRankSum=-0.991;QD=36.05;ReadPosRankSum=0.809;SOR=0.381;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,38,0:38:99:1628,0,1630:0,0,15,23 0/2:9,0,17:26:99:679,708,1052,0,344,293:3,6,10,7 +chrX 1523364 . G A 1676 . AC=1;AF=0.333;AN=3;AS_AltDP=54;AS_QD=31.02;BaseQRankSum=-0.392;DP=118;ExcessHet=0.0000;FS=3.254;MQ=60.00;MQRankSum=0;QD=31.02;ReadPosRankSum=1.103;SOR=0.458;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,54:55:99:.:1706,0:1,0,25,29 0/0:.:61:95:61:0,95,1375 +chrX 1523758 . T C 4946 . AC=3;AF=1.00;AN=3;AS_AltDP=151;AS_QD=32.95;DP=154;ExcessHet=0.0000;FS=0.000;MQ=59.88;QD=32.95;SOR=0.909;VarDP=151 GT:AD:DP:GQ:PL:SB 1:0,82:82:99:2679,0:0,0,35,47 1/1:0,69:69:99:2297,207,0:0,0,33,36 +chrX 1523796 . C T 781 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=12.10;BaseQRankSum=0.119;DP=135;ExcessHet=0.0000;FS=4.902;MQ=59.74;MQRankSum=0.93;QD=12.10;ReadPosRankSum=-0.391;SOR=1.303;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:99:66:0,1692 0/1:37,30:67:99:.:811,0,1044:18,19,19,11 +chrX 1524301 . C T 3845 . AC=3;AF=1.00;AN=3;AS_AltDP=111;AS_QD=34.91;DP=117;ExcessHet=0.0000;FS=0.000;MQ=59.53;QD=34.91;SOR=0.748;VarDP=111 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,69:69:99:.:.:2338,0:.:0,0,38,31 1|1:0,42:42:99:0|1:1524301_C_T:1537,125,0:1524301:0,0,19,23 +chrX 1524307 . C T 390 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=9.55;BaseQRankSum=-0.244;DP=109;ExcessHet=0.0000;FS=4.461;MQ=59.44;MQRankSum=-1.156;QD=9.55;ReadPosRankSum=-1.111;SOR=1.034;VarDP=44 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:99:62:.:.:0,889 0|1:26,18:44:99:.:0|1:1524301_C_T:420,0,732:1524301:15,11,7,11 +chrX 1524349 . TCATC T 339.97 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=10.83;BaseQRankSum=0.873;DP=101;ExcessHet=0.0000;FS=11.591;MQ=57.92;MQRankSum=1.016;QD=10.83;ReadPosRankSum=-1.135;SOR=2.472;VarDP=35 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:99:62:.:.:0,889 0|1:24,11:35:99:.:0|1:1524349_TCATC_T:379,0,924:1524349:13,11,2,9 +chrX 1524402 . CATG C 446.97 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=14.73;BaseQRankSum=-0.467;DP=98;ExcessHet=0.0000;FS=0.000;MQ=54.85;MQRankSum=1.053;QD=14.73;ReadPosRankSum=0.534;SOR=0.836;VarDP=33 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:99:62:.:.:0,889 0|1:20,13:33:99:.:0|1:1524349_TCATC_T:486,0,780:1524349:7,13,4,9 +chrX 1524406 . CATGCA C,* 488.97 . AC=1,0;AF=0.333,0.00;AN=3;AS_AltDP=14,0;AS_QD=15.53,0.00;BaseQRankSum=-0.182;DP=99;ExcessHet=0.0000;FS=0.000;MQ=55.00;MQRankSum=1.153;QD=15.53;ReadPosRankSum=0.516;SOR=0.646;VarDP=34 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:99:62:.:.:0,889,889 0|1:20,14,0:34:99:.:0|1:1524349_TCATC_T:528,0,777,588,807,1390:1524349:7,13,5,9 +chrX 1524409 . G C,GCATC,GCATGCATC,* 2324 . AC=0,0,2,1;AF=0.00,0.00,0.667,0.333;AN=3;AS_AltDP=8,3,46,13;AS_QD=28.00,33.56,24.97,0.00;DP=80;ExcessHet=0.0000;FS=0.000;MQ=57.40;QD=33.63;SOR=0.941;VarDP=70 GT:AD:DP:GQ:PL:SB 3:0,8,3,27,0:38:99:1132,908,602,0,1096:0,0,20,18 3/4:0,0,0,19,13:32:99:1222,1239,1332,1246,1334,1340,545,543,545,486,702,788,797,0,763:0,0,11,21 +chrX 1524421 . C G 507 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=17.32;BaseQRankSum=1.431;DP=66;ExcessHet=0.0000;FS=0.000;MQ=55.17;MQRankSum=1.419;QD=17.32;ReadPosRankSum=-0.79;SOR=0.665;VarDP=31 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:33:99:33:.:.:0,435 0|1:17,14:31:99:.:0|1:1524349_TCATC_T:537,0,651:1524349:6,11,5,9 +chrX 1524425 . C G 591 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=18.82;BaseQRankSum=0.05;DP=68;ExcessHet=0.0000;FS=0.000;MQ=55.45;MQRankSum=1.605;QD=18.82;ReadPosRankSum=-1.602;SOR=0.610;VarDP=33 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:33:99:33:.:.:0,435 0|1:17,16:33:99:.:0|1:1524349_TCATC_T:621,0,645:1524349:6,11,6,10 +chrX 1524429 . C G 594 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=19.50;BaseQRankSum=0.472;DP=67;ExcessHet=0.0000;FS=0.000;MQ=55.31;MQRankSum=1.71;QD=19.50;ReadPosRankSum=-1.997;SOR=0.693;VarDP=32 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:33:99:33:.:.:0,435 0|1:16,16:32:99:.:0|1:1524349_TCATC_T:624,0,603:1524349:6,10,6,10 +chrX 1524433 . C G 597 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=20.23;BaseQRankSum=0.49;DP=66;ExcessHet=0.0000;FS=0.000;MQ=55.17;MQRankSum=1.824;QD=20.23;ReadPosRankSum=-2.246;SOR=0.793;VarDP=31 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:33:99:33:.:.:0,435 0|1:15,16:31:99:.:0|1:1524349_TCATC_T:627,0,561:1524349:6,9,6,10 +chrX 1524434 . CATCCATTCATCCATCT C 584.97 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=19.50;BaseQRankSum=1.442;DP=67;ExcessHet=0.0000;FS=0.000;MQ=55.22;MQRankSum=1.972;QD=19.50;ReadPosRankSum=-1.78;SOR=0.948;VarDP=32 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:33:99:33:.:.:0,435 0|1:16,16:32:99:.:0|1:1524349_TCATC_T:624,0,603:1524349:7,9,6,10 +chrX 1524485 . C A 663 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=21.66;BaseQRankSum=-1.738;DP=65;ExcessHet=0.0000;FS=0.000;MQ=57.07;MQRankSum=0.709;QD=21.66;ReadPosRankSum=1.751;SOR=0.593;VarDP=32 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:33:99:33:.:.:0,435 0|1:14,18:32:99:.:0|1:1524349_TCATC_T:693,0,534:1524349:5,9,7,11 +chrX 1524501 . G GCATC 606.97 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=24.85;BaseQRankSum=-0.166;DP=59;ExcessHet=0.0000;FS=1.596;MQ=57.41;MQRankSum=-0.329;QD=24.85;ReadPosRankSum=1.322;SOR=1.112;VarDP=26 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:33:99:33:.:.:0,435 0|1:9,17:26:99:.:0|1:1524349_TCATC_T:646,0,327:1524349:4,5,6,11 +chrX 1524543 . A C 808 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=28.51;DP=42;ExcessHet=0.0000;FS=0.000;MQ=57.75;QD=38.09;SOR=1.329;VarDP=22 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,22:22:99:.:838,0:0,0,8,14 0/0:.:18:0:18:0,0,336 +chrX 1524549 . C CCATG 436.97 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=26.44;BaseQRankSum=-1.063;DP=38;ExcessHet=0.0000;FS=4.868;MQ=54.71;MQRankSum=-0.939;QD=26.44;ReadPosRankSum=-0.049;SOR=1.518;VarDP=18 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:20:99:20:.:.:0,496 0|1:5,13:18:99:.:0|1:1524349_TCATC_T:476,0,171:1524349:3,2,4,9 +chrX 1524557 . GCATC G 554.97 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=33.00;BaseQRankSum=0.703;DP=61;ExcessHet=0.0000;FS=3.522;MQ=53.62;MQRankSum=-0.488;QD=33.00;ReadPosRankSum=0.386;SOR=0.761;VarDP=18 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,17:18:99:.:594,0:1,0,7,10 0/0:.:39:0:39:0,0,326 +chrX 1524617 . C CCATT 148.97 . AC=1;AF=0.333;AN=3;AS_AltDP=5;AS_QD=15.67;BaseQRankSum=-1.335;DP=42;ExcessHet=0.0000;FS=2.533;MQ=52.38;MQRankSum=-2.0;QD=15.67;ReadPosRankSum=1.063;SOR=0.707;VarDP=12 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:24:99:24:.:.:0,548 0|1:7,5:12:99:.:0|1:1524617_C_CCATT:188,0,279:1524617:2,5,3,2 +chrX 1524625 . T C 153 . AC=1;AF=0.333;AN=3;AS_AltDP=5;AS_QD=13.07;BaseQRankSum=0.15;DP=44;ExcessHet=0.0000;FS=5.756;MQ=51.38;MQRankSum=-1.645;QD=13.07;ReadPosRankSum=1.755;SOR=0.651;VarDP=14 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:24:99:24:.:.:0,548 0|1:9,5:14:99:.:0|1:1524617_C_CCATT:183,0,363:1524617:2,7,3,2 +chrX 1524637 . C A 153 . AC=1;AF=0.333;AN=3;AS_AltDP=5;AS_QD=13.07;BaseQRankSum=-1.151;DP=47;ExcessHet=0.0000;FS=5.756;MQ=50.58;MQRankSum=-1.645;QD=13.07;ReadPosRankSum=1.59;SOR=0.651;VarDP=14 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:24:99:24:.:.:0,548 0|1:9,5:14:99:.:0|1:1524617_C_CCATT:183,0,363:1524617:2,7,3,2 +chrX 1524645 . A ACATCCATGCATC,ACATCCATG,ACATCCATGCATCCATC,G 743 . AC=0,1,0,1;AF=0.00,0.333,0.00,0.333;AN=3;AS_AltDP=1,18,1,5;AS_QD=0.00,21.54,5.78,21.62;BaseQRankSum=1.932;DP=56;ExcessHet=0.0000;FS=3.812;MQ=51.73;MQRankSum=0.663;QD=23.42;ReadPosRankSum=1.198;SOR=0.193;VarDP=33 GT:AD:DP:GQ:PL:SB 2:1,1,18,1,0:21:99:492,603,0,440,550:1,0,9,11 0/4:7,0,0,0,5:12:99:281,272,655,213,581,624,272,655,581,655,0,348,295,348,354:1,6,3,2 +chrX 1524653 . C G 209 . AC=1;AF=0.333;AN=3;AS_AltDP=7;AS_QD=11.95;BaseQRankSum=-1.838;DP=59;ExcessHet=0.0000;FS=8.022;MQ=49.82;MQRankSum=1.781;QD=11.95;ReadPosRankSum=0.974;SOR=2.566;VarDP=20 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:30:99:30:.:.:0,765 0|1:13,7:20:99:.:0|1:1524653_C_G:239,0,434:1524653:7,6,1,6 +chrX 1524669 . T C,TCATC,TCATCCATC 903 . AC=1,0,2;AF=0.333,0.00,0.667;AN=3;AS_AltDP=22,5,10;AS_QD=26.70,1.83,29.10;BaseQRankSum=2.302;DP=67;ExcessHet=0.0000;FS=0.000;MQ=50.81;MQRankSum=2.279;QD=24.55;ReadPosRankSum=-0.955;SOR=0.306;VarDP=38 GT:AD:DP:GQ:PL:SB 3:0,8,5,5:18:99:238,156,227,0:0,0,10,8 1/3:1,14,0,5:20:99:695,163,462,720,354,887,509,0,554,515:0,1,9,10 +chrX 1524677 . C T 466 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=17.10;BaseQRankSum=0.911;DP=70;ExcessHet=0.0000;FS=0.000;MQ=51.44;MQRankSum=2.149;QD=17.10;ReadPosRankSum=-1.246;SOR=0.582;VarDP=29 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:32:99:32:.:.:0,389 0|1:15,14:29:99:.:0|1:1524653_C_G:496,0,476:1524653:8,7,7,7 +chrX 1524741 . GCATCCATC G,CCATCCATC,GCATC 1698 . AC=1,0,2;AF=0.333,0.00,0.667;AN=3;AS_AltDP=20,1,16;AS_QD=27.03,0.00,34.58;DP=59;ExcessHet=0.0000;FS=0.000;MQ=50.47;QD=46.70;SOR=2.494;VarDP=37 GT:AD:DP:GQ:PL:SB 1:0,20,1,0:21:99:1056,0,1109,1104:0,0,17,4 3/3:0,0,0,16:16:48:672,672,672,672,672,672,48,48,48,0:0,0,12,4 +chrX 1524796 . T A 1069 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=28.27;DP=52;ExcessHet=0.0000;FS=0.000;MQ=48.64;QD=40.70;SOR=2.303;VarDP=27 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,27:27:99:.:1099,0:0,0,11,3 0/0:.:22:41:22:0,41,571 +chrX 1524805 . TCATCCATCCATCCATC T,TCATCCATCCATC 753.97 . AC=1,1;AF=0.500,0.500;AN=2;AS_AltDP=10,11;AS_QD=28.00,32.71;BaseQRankSum=1.654;DP=73;ExcessHet=0.0000;FS=0.000;MQ=53.61;MQRankSum=3.673;QD=33.04;ReadPosRankSum=-0.473;SOR=0.730;VarDP=24 GT:AD:DP:GQ:MIN_DP:PL:SB .:.:29:0:29:0,0,0 1/2:3,10,11:24:99:.:793,429,746,337,0,335:2,1,13,8 +chrX 1524822 . C T 167 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=9.85;BaseQRankSum=0.859;DP=74;ExcessHet=0.0000;FS=0.000;MQ=50.24;MQRankSum=2.438;QD=9.85;ReadPosRankSum=2.475;SOR=0.941;VarDP=20 GT:AD:DP:GQ:MIN_DP:PL:SB 1:9,11:20:99:.:197,0:7,2,9,2 0/0:.:38:60:38:0,60,1002 +chrX 1524826 . CATCCATCCATCCATCCATCCATCCACTCATCCATTCAACCATCCACTCATCCATCCATCCATCT TATCCATCCATCCATCCATCCATCCACTCATCCATTCAACCATCCACTCATCCATCCATCCATCT,C 346 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=3,11;AS_QD=0.00,23.50;BaseQRankSum=1.882;DP=103;ExcessHet=0.0000;FS=2.445;MQ=54.81;MQRankSum=1.493;QD=19.79;ReadPosRankSum=2.448;SOR=1.802;VarDP=19 GT:AD:DP:GQ:MIN_DP:PL:SB 2:5,3,11:19:99:.:376,987,0:3,2,11,3 0/0:.:38:60:38:0,60,1002,60,1002,1002 +chrX 1524890 . TATCC *,T,TATCCATCC 1405.97 . AC=1,1,1;AF=0.333,0.333,0.333;AN=3;AS_AltDP=0,20,16;AS_QD=27.41,29.25,27.92;DP=115;ExcessHet=0.0000;FS=0.000;MQ=58.84;QD=40.14;SOR=0.992;VarDP=36 GT:AD:DP:GQ:PL:SB 1:5,11,0,0:19:99:376,0,773,773:3,2,11,3 2/3:0,0,20,16:36:99:1445,1444,1458,619,637,591,821,820,0,771:0,0,21,15 +chrX 1525004 . A G 768 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=11.40;BaseQRankSum=-0.958;DP=150;ExcessHet=0.0000;FS=0.889;MQ=60.00;MQRankSum=0;QD=11.40;ReadPosRankSum=-0.961;SOR=0.818;VarDP=70 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:75:99:75:0,1440 0/1:38,32:70:99:.:798,0,1029:19,19,17,15 +chrX 1525194 . A G 1031 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=16.32;BaseQRankSum=1.187;DP=147;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=16.32;ReadPosRankSum=-0.749;SOR=0.683;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:75:99:75:0,1440 0/1:28,37:65:99:.:1061,0,726:12,16,16,21 +chrX 1525359 . G A 3350 . AC=3;AF=1.00;AN=3;AS_AltDP=104;AS_QD=32.50;DP=109;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.50;SOR=0.693;VarDP=104 GT:AD:DP:GQ:PL:SB 1:0,45:45:99:1414,0:0,0,24,21 1/1:0,59:59:99:1966,177,0:0,0,28,31 +chrX 1525385 . C T 949 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=15.30;BaseQRankSum=-1.106;DP=118;ExcessHet=0.0000;FS=0.962;MQ=60.00;MQRankSum=0;QD=15.30;ReadPosRankSum=-0.081;SOR=0.693;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:53:99:53:0,1181 0/1:28,36:64:99:.:979,0,736:13,15,19,17 +chrX 1525440 . T C 854 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=15.24;BaseQRankSum=2.082;DP=114;ExcessHet=0.0000;FS=0.983;MQ=60.00;MQRankSum=0;QD=15.24;ReadPosRankSum=-0.99;SOR=0.557;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:53:99:53:0,1181 0/1:27,31:58:99:.:884,0,664:15,12,16,15 +chrX 1525950 . A T 2617 . AC=2;AF=0.667;AN=3;AS_AltDP=87;AS_QD=24.28;BaseQRankSum=-0.463;DP=125;ExcessHet=0.0000;FS=3.248;MQ=59.70;MQRankSum=0;QD=24.28;ReadPosRankSum=0.921;SOR=0.859;VarDP=109 GT:AD:DP:GQ:PL:SB 1:0,61:61:99:1955,0:0,0,38,23 0/1:22,26:48:99:692,0,576:10,12,11,15 +chrX 1526322 . C A 623 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=12.56;BaseQRankSum=-1.248;DP=114;ExcessHet=0.0000;FS=1.077;MQ=60.00;MQRankSum=0;QD=12.56;ReadPosRankSum=-1.027;SOR=0.456;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,1423 0/1:27,25:52:99:.:653,0,737:16,11,13,12 +chrX 1526421 . T C 3622 . AC=3;AF=1.00;AN=3;AS_AltDP=88;AS_QD=32.20;DP=119;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=41.50;SOR=0.836;VarDP=88 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,47:47:99:.:.:2094,0:.:0,0,23,24 1|1:0,41:41:99:0|1:1526421_T_C:1558,123,0:1526421:0,0,18,23 +chrX 1526443 . G A 3073 . AC=2;AF=0.667;AN=3;AS_AltDP=83;AS_QD=29.84;BaseQRankSum=0.123;DP=106;ExcessHet=0.0000;FS=4.856;MQ=60.00;MQRankSum=0;QD=29.84;ReadPosRankSum=0.73;SOR=0.777;VarDP=104 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,57:57:99:.:.:2430,0:.:0,0,23,24 0|1:21,26:47:99:0|1:1526421_T_C:673,0,504:1526421:12,9,7,14 +chrX 1526531 . T G 2409 . AC=2;AF=0.667;AN=3;AS_AltDP=91;AS_QD=22.17;BaseQRankSum=-2.038;DP=113;ExcessHet=0.0000;FS=2.126;MQ=60.00;MQRankSum=0;QD=22.17;ReadPosRankSum=-0.417;SOR=0.413;VarDP=110 GT:AD:DP:GQ:PL:SB 1:0,56:56:99:1544,0:0,0,27,29 0/1:19,35:54:99:895,0,489:7,12,15,20 +chrX 1526680 . T TCATC 465.97 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=13.29;BaseQRankSum=1.565;DP=112;ExcessHet=0.0000;FS=2.961;MQ=60.00;MQRankSum=0;QD=13.29;ReadPosRankSum=-1.591;SOR=1.329;VarDP=38 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,1531 0/1:24,14:38:99:.:505,0,958:12,12,9,5 +chrX 1526923 . C T 807 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=13.50;BaseQRankSum=2.003;DP=132;ExcessHet=0.0000;FS=0.998;MQ=59.97;MQRankSum=0;QD=13.50;ReadPosRankSum=1.091;SOR=0.471;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,1531 0/1:31,31:62:99:.:837,0,766:20,11,18,13 +chrX 1526959 . T C 740 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=12.03;BaseQRankSum=-0.559;DP=130;ExcessHet=0.0000;FS=2.107;MQ=59.97;MQRankSum=0;QD=12.03;ReadPosRankSum=-0.323;SOR=0.412;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,1531 0/1:34,30:64:99:.:770,0,919:20,14,15,15 +chrX 1527233 . C T 1046 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=17.08;BaseQRankSum=-1.735;DP=129;ExcessHet=0.0000;FS=6.768;MQ=60.00;MQRankSum=0;QD=17.08;ReadPosRankSum=-0.816;SOR=0.491;VarDP=63 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:65:99:65:.:.:0,1531 0|1:33,30:63:99:.:0|1:1527233_C_T:1076,0,1222:1527233:12,21,16,14 +chrX 1527243 . G A 1025 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=16.75;BaseQRankSum=-0.044;DP=130;ExcessHet=0.0000;FS=4.975;MQ=60.00;MQRankSum=0;QD=16.75;ReadPosRankSum=-0.028;SOR=0.310;VarDP=63 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:65:99:65:.:.:0,1531 0|1:34,29:63:99:.:0|1:1527233_C_T:1055,0,1197:1527233:12,22,14,15 +chrX 1527380 . C A 605 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=12.45;BaseQRankSum=2.025;DP=118;ExcessHet=0.0000;FS=3.933;MQ=60.00;MQRankSum=0;QD=12.45;ReadPosRankSum=0.521;SOR=0.791;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,1531 0/1:28,23:51:99:.:635,0,774:16,12,10,13 +chrX 1527706 . TATCC T 320.97 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=8.00;BaseQRankSum=0.556;DP=130;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=8.00;ReadPosRankSum=-1.81;SOR=0.859;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,1531 0/1:34,11:45:99:.:360,0,1372:17,17,5,6 +chrX 1527851 . G A 707 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=12.93;BaseQRankSum=0.385;DP=123;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=12.93;ReadPosRankSum=-1.009;SOR=0.653;VarDP=57 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:65:99:65:.:.:0,1531 0|1:35,22:57:99:.:0|1:1527851_G_A:737,0,1335:1527851:24,11,15,7 +chrX 1527872 . C T 530 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=10.57;BaseQRankSum=0.275;DP=119;ExcessHet=0.0000;FS=1.190;MQ=60.00;MQRankSum=0;QD=10.57;ReadPosRankSum=-0.058;SOR=0.941;VarDP=53 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:65:99:65:.:.:0,1531 0|1:37,16:53:99:.:0|1:1527851_G_A:560,0,1422:1527851:23,14,11,5 +chrX 1528201 . G A 742 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=13.54;BaseQRankSum=-0.729;DP=123;ExcessHet=0.0000;FS=7.398;MQ=60.00;MQRankSum=0;QD=13.54;ReadPosRankSum=0;SOR=1.688;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,1531 0/1:28,29:57:99:.:772,0,772:14,14,20,9 +chrX 1528231 . G A 4229 . AC=3;AF=1.00;AN=3;AS_AltDP=126;AS_QD=33.80;DP=129;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.80;SOR=1.099;VarDP=126 GT:AD:DP:GQ:PL:SB 1:0,70:70:99:2362,0:0,0,42,28 1/1:0,56:56:99:1897,168,0:0,0,32,24 +chrX 1528306 . A C 546 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=10.29;BaseQRankSum=-0.117;DP=120;ExcessHet=0.0000;FS=2.305;MQ=60.00;MQRankSum=0;QD=10.29;ReadPosRankSum=0.208;SOR=0.552;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,1189 0/1:33,23:56:99:.:576,0,882:19,14,11,12 +chrX 1528804 . T A 875 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=13.12;BaseQRankSum=0.009;DP=137;ExcessHet=0.0000;FS=12.623;MQ=59.86;MQRankSum=0;QD=13.12;ReadPosRankSum=1.254;SOR=0.812;VarDP=69 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,1189 0/1:35,34:69:99:.:905,0,924:12,23,20,14 +chrX 1528916 . G T 1120 . AC=1;AF=0.333;AN=3;AS_AltDP=40;AS_QD=16.43;BaseQRankSum=-0.08;DP=134;ExcessHet=0.0000;FS=3.601;MQ=60.00;MQRankSum=0;QD=16.43;ReadPosRankSum=-0.148;SOR=0.368;VarDP=70 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,1189 0/1:30,40:70:99:.:1150,0,798:7,23,13,27 +chrX 1529312 . T A 740 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=14.53;BaseQRankSum=0.162;DP=120;ExcessHet=0.0000;FS=16.056;MQ=60.00;MQRankSum=0;QD=14.53;ReadPosRankSum=-0.187;SOR=0.606;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,1189 0/1:25,28:53:99:.:770,0,665:19,6,12,16 +chrX 1529504 . T G 700 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=10.28;BaseQRankSum=-0.62;DP=136;ExcessHet=0.0000;FS=0.908;MQ=60.00;MQRankSum=0;QD=10.28;ReadPosRankSum=-1.094;SOR=0.679;VarDP=71 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,1189 0/1:42,29:71:99:.:730,0,1182:20,22,15,14 +chrX 1529623 . C T 2698 . AC=2;AF=0.667;AN=3;AS_AltDP=89;AS_QD=22.55;BaseQRankSum=0.009;DP=125;ExcessHet=0.0000;FS=0.788;MQ=60.00;MQRankSum=0;QD=22.55;ReadPosRankSum=-1.877;SOR=0.557;VarDP=121 GT:AD:DP:GQ:PL:SB 1:0,58:58:99:1921,0:0,0,27,31 0/1:32,31:63:99:807,0,1219:12,20,10,21 +chrX 1529625 . C A 756 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=12.28;BaseQRankSum=0.969;DP=135;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=12.28;ReadPosRankSum=2.297;SOR=0.606;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:69:99:69:0,1800 0/1:33,31:64:99:.:786,0,1260:11,22,11,20 +chrX 1529665 . C T 957 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=14.95;BaseQRankSum=2.17;DP=136;ExcessHet=0.0000;FS=0.949;MQ=60.00;MQRankSum=0;QD=14.95;ReadPosRankSum=1.17;SOR=0.914;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:69:99:69:0,1800 0/1:31,35:66:99:.:987,0,774:14,17,14,21 +chrX 1529777 . C T 2698 . AC=2;AF=0.667;AN=3;AS_AltDP=87;AS_QD=21.65;BaseQRankSum=1.058;DP=130;ExcessHet=0.0000;FS=0.717;MQ=60.00;MQRankSum=0;QD=21.65;ReadPosRankSum=-0.953;SOR=0.808;VarDP=126 GT:AD:DP:GQ:PL:SB 1:0,68:68:99:2276,0:0,0,34,34 0/1:39,19:58:99:452,0,1077:20,19,13,6 +chrX 1529884 . T G 710 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=16.09;BaseQRankSum=1.682;DP=111;ExcessHet=0.0000;FS=2.785;MQ=60.00;MQRankSum=0;QD=16.09;ReadPosRankSum=0.654;SOR=1.385;VarDP=46 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:99:63:.:.:0,1796 0|1:20,26:46:99:.:0|1:1529884_T_G:740,0,750:1529884:12,8,19,7 +chrX 1529890 . G A 2455 . AC=2;AF=0.667;AN=3;AS_AltDP=80;AS_QD=24.13;BaseQRankSum=-2.564;DP=108;ExcessHet=0.0000;FS=10.059;MQ=60.00;MQRankSum=0;QD=24.13;ReadPosRankSum=-1.378;SOR=0.281;VarDP=103 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,61:61:99:.:.:2016,0:.:0,0,28,33 0|1:23,19:42:99:1|0:1529884_T_G:469,0,909:1529884:16,7,11,8 +chrX 1529989 . C A 802 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=14.60;BaseQRankSum=0.732;DP=120;ExcessHet=0.0000;FS=1.037;MQ=60.00;MQRankSum=0;QD=14.60;ReadPosRankSum=0.799;SOR=0.481;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,1663 0/1:27,30:57:99:.:832,0,653:10,17,13,17 +chrX 1530066 . C T 2528 . AC=2;AF=0.667;AN=3;AS_AltDP=82;AS_QD=23.47;BaseQRankSum=-2.048;DP=112;ExcessHet=0.0000;FS=7.298;MQ=60.00;MQRankSum=0;QD=23.47;ReadPosRankSum=-0.329;SOR=0.266;VarDP=109 GT:AD:DP:GQ:PL:SB 1:0,56:56:99:1876,0:0,0,30,26 0/1:27,26:53:99:682,0,769:9,18,10,16 +chrX 1530149 . GTATGTATGATCTATCTATCTATCTATCTATCTATC GTATCTATCTATCTATC,G,GTATCTATCTATCTATCTATC 2662.97 . AC=1,0,1;AF=0.333,0.00,0.333;AN=3;AS_AltDP=45,0,14;AS_QD=31.10,8.78,23.22;BaseQRankSum=-0.093;DP=100;ExcessHet=0.0000;FS=1.055;MQ=59.77;MQRankSum=6.857;QD=35.09;ReadPosRankSum=2.224;SOR=0.524;VarDP=77 GT:AD:DP:GQ:PL:SB 1:1,45,0,0:46:99:1959,0,1974,1974:1,0,28,17 0/3:17,0,0,14:31:99:743,725,1611,585,1432,1533,0,805,678,816:11,6,8,6 +chrX 1530157 . GATCTATCTATCTATCTATC *,G,GTATCTATCTATCTATCTATC 1793.97 . AC=2,1,0;AF=0.667,0.333,0.00;AN=3;AS_AltDP=20,9,0;AS_QD=0.00,32.92,31.18;DP=95;ExcessHet=0.0000;FS=0.000;MQ=59.53;QD=63.21;SOR=0.423;VarDP=29 GT:AD:DP:GQ:PL:SB 1:1,45,0,0:46:99:1959,0,1974,1974:1,0,28,17 1/2:0,20,9,0:29:99:1833,661,605,998,0,937,1355,365,803,1314:0,0,16,13 +chrX 1530180 . C *,G 420 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=0,9;AS_QD=0.00,16.07;BaseQRankSum=0.094;DP=93;ExcessHet=0.0000;FS=1.691;MQ=59.53;MQRankSum=-1.376;QD=16.07;ReadPosRankSum=0.567;SOR=0.307;VarDP=28 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:47:99:47:.:.:0,1215,1215 0|2:19,0,9:28:99:.:0|1:1530180_C_*:450,365,1432,0,804,988:1530180:13,6,5,4 +chrX 1530184 . C *,G 415 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=0,9;AS_QD=0.00,14.83;BaseQRankSum=-1.34;DP=96;ExcessHet=0.0000;FS=3.654;MQ=59.56;MQRankSum=-1.455;QD=14.83;ReadPosRankSum=1.108;SOR=0.243;VarDP=30 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:47:99:47:.:.:0,1215,1215 0|2:21,0,9:30:99:.:0|1:1530180_C_*:445,365,1505,0,877,1062:1530180:15,6,5,4 +chrX 1530203 . T C 2738 . AC=2;AF=0.667;AN=3;AS_AltDP=71;AS_QD=30.42;BaseQRankSum=2.222;DP=98;ExcessHet=0.0000;FS=0.000;MQ=59.96;MQRankSum=7.143;QD=30.42;ReadPosRankSum=0.745;SOR=0.822;VarDP=91 GT:AD:DP:GQ:PL:SB 1:1,49:50:99:1943,0:1,0,26,23 0/1:19,22:41:99:825,0,642:10,9,15,7 +chrX 1530269 . T TTATC,TTATCTACCTATC 1308.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=22,28;AS_QD=6.20,16.88;BaseQRankSum=-0.588;DP=98;ExcessHet=0.0000;FS=1.832;MQ=60.00;MQRankSum=0;QD=16.44;ReadPosRankSum=1.101;SOR=0.511;VarDP=82 GT:AD:DP:GQ:PL:SB 1:15,22,0:37:99:335,0,970:6,9,13,9 0/2:17,0,28:45:99:1013,1064,1728,0,663,580:13,4,14,14 +chrX 1530334 . A ATATC 549.97 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=14.37;BaseQRankSum=-0.523;DP=111;ExcessHet=0.0000;FS=1.210;MQ=60.00;MQRankSum=0;QD=14.37;ReadPosRankSum=0.134;SOR=0.495;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:99:60:0,1474 0/1:25,16:41:99:.:589,0,980:14,11,8,8 +chrX 1530414 . C T 774 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=12.18;BaseQRankSum=1.222;DP=127;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=12.18;ReadPosRankSum=-0.812;SOR=0.713;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:99:60:0,1474 0/1:36,30:66:99:.:804,0,948:17,19,14,16 +chrX 1530513 . C CTAATTTA 898.97 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=17.05;BaseQRankSum=-0.776;DP=124;ExcessHet=0.0000;FS=1.049;MQ=60.00;MQRankSum=0;QD=17.05;ReadPosRankSum=0.473;SOR=0.973;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:99:60:0,1474 0/1:30,25:55:99:.:938,0,1175:14,16,10,15 +chrX 1530573 . G GATCT 709.97 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=14.98;BaseQRankSum=2.005;DP=114;ExcessHet=0.0000;FS=3.989;MQ=60.00;MQRankSum=0;QD=14.98;ReadPosRankSum=-0.258;SOR=1.053;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:99:60:0,1474 0/1:30,20:50:99:.:749,0,1150:16,14,8,12 +chrX 1530761 . A G 2751 . AC=2;AF=0.667;AN=3;AS_AltDP=89;AS_QD=22.43;BaseQRankSum=1.162;DP=128;ExcessHet=0.0000;FS=6.319;MQ=60.00;MQRankSum=0;QD=22.43;ReadPosRankSum=0.554;SOR=1.173;VarDP=124 GT:AD:DP:GQ:PL:SB 1:0,62:62:99:2070,0:0,0,38,24 0/1:35,27:62:99:711,0,1358:17,18,16,11 +chrX 1530765 . C CTATT 1319.97 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=20.91;BaseQRankSum=-1.537;DP=135;ExcessHet=0.0000;FS=3.413;MQ=60.00;MQRankSum=0;QD=20.91;ReadPosRankSum=-0.099;SOR=0.459;VarDP=65 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:68:99:68:.:.:0,1718 0|1:30,35:65:99:.:0|1:1530765_C_CTATT:1359,0,1134:1530765:18,12,17,18 +chrX 1530789 . TTCTA T 1291.97 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=21.47;BaseQRankSum=0.323;DP=131;ExcessHet=0.0000;FS=2.134;MQ=60.00;MQRankSum=0;QD=21.47;ReadPosRankSum=0.436;SOR=0.442;VarDP=62 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:68:99:68:.:.:0,1718 0|1:28,34:62:99:.:0|1:1530765_C_CTATT:1331,0,1073:1530765:17,11,18,16 +chrX 1530868 . T TTCTATCTA 1180.97 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=21.03;BaseQRankSum=0.603;DP=136;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=21.03;ReadPosRankSum=-0.133;SOR=0.668;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:99:68:0,1718 0/1:27,31:58:99:.:1220,0,1021:15,12,17,14 +chrX 1530906 . CATCT C 942.97 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=17.54;BaseQRankSum=1.401;DP=133;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=17.54;ReadPosRankSum=-0.182;SOR=0.693;VarDP=56 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:68:99:68:.:.:0,1718 0|1:30,26:56:99:.:0|1:1530906_CATCT_C:982,0,1161:1530906:15,15,13,13 +chrX 1530938 . GTATC G 904.97 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=15.73;BaseQRankSum=1.095;DP=129;ExcessHet=0.0000;FS=2.197;MQ=60.00;MQRankSum=0;QD=15.73;ReadPosRankSum=-0.662;SOR=0.431;VarDP=60 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:68:99:68:.:.:0,1718 0|1:35,25:60:99:.:0|1:1530906_CATCT_C:944,0,1394:1530906:14,21,12,13 +chrX 1530964 . C CATGT 1192.97 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=17.86;BaseQRankSum=-0.053;DP=138;ExcessHet=0.0000;FS=6.352;MQ=60.00;MQRankSum=0;QD=17.86;ReadPosRankSum=-1.369;SOR=0.836;VarDP=69 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:68:99:68:.:.:0,1718 0|1:36,33:69:99:.:0|1:1530906_CATCT_C:1232,0,1413:1530906:15,21,19,14 +chrX 1531056 . G A 4037 . AC=3;AF=1.00;AN=3;AS_AltDP=129;AS_QD=31.53;DP=130;ExcessHet=0.0000;FS=0.000;MQ=59.87;QD=31.53;SOR=0.912;VarDP=129 GT:AD:DP:GQ:PL:SB 1:0,73:73:99:2291,0:0,0,45,28 1/1:0,56:56:99:1776,167,0:0,0,26,30 +chrX 1531068 . G GTCTATCTA,GTCTATCTATCTA 2577.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=51,26;AS_QD=29.38,33.48;BaseQRankSum=-0.42;DP=139;ExcessHet=0.0000;FS=4.984;MQ=59.88;MQRankSum=0;QD=26.98;ReadPosRankSum=-0.763;SOR=0.645;VarDP=97 GT:AD:DP:GQ:PL:SB 2:1,23,26:50:94:1540,94,0:0,1,29,20 0/1:19,28,0:47:99:1077,0,699,1135,783,1918:8,11,13,15 +chrX 1531402 . A T 728 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=13.30;BaseQRankSum=0.957;DP=122;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.30;ReadPosRankSum=-0.24;SOR=0.650;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,1662 0/1:30,27:57:99:.:758,0,826:17,13,15,12 +chrX 1531639 . A G 542 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=12.43;BaseQRankSum=1.324;DP=111;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=12.43;ReadPosRankSum=-0.452;SOR=0.631;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,1662 0/1:25,21:46:99:.:572,0,691:8,17,7,14 +chrX 1531700 . A C 736 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=12.98;BaseQRankSum=-0.45;DP=127;ExcessHet=0.0000;FS=2.248;MQ=60.00;MQRankSum=0;QD=12.98;ReadPosRankSum=0.933;SOR=0.423;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,1662 0/1:30,29:59:99:.:766,0,824:10,20,12,17 +chrX 1531770 . T C 728 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=14.30;BaseQRankSum=-0.533;DP=121;ExcessHet=0.0000;FS=3.855;MQ=60.00;MQRankSum=0;QD=14.30;ReadPosRankSum=0.142;SOR=0.449;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,1662 0/1:26,27:53:99:.:758,0,734:10,16,14,13 +chrX 1531809 . G C 657 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=14.02;BaseQRankSum=2.553;DP=118;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.02;ReadPosRankSum=-0.1;SOR=0.622;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,1662 0/1:25,24:49:99:.:687,0,661:12,13,12,12 +chrX 1531820 . C T 596 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=13.04;BaseQRankSum=0.354;DP=114;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.04;ReadPosRankSum=0.103;SOR=0.711;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,1662 0/1:25,23:48:99:.:626,0,670:12,13,12,11 +chrX 1531861 . T C 564 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=13.81;BaseQRankSum=-0.789;DP=109;ExcessHet=0.0000;FS=2.649;MQ=60.00;MQRankSum=0;QD=13.81;ReadPosRankSum=-0.875;SOR=1.204;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,1662 0/1:21,22:43:99:.:594,0,581:11,10,14,8 +chrX 1531954 . C T 672 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=13.50;BaseQRankSum=1.072;DP=119;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.50;ReadPosRankSum=-0.513;SOR=0.693;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,1662 0/1:26,26:52:99:.:702,0,673:17,9,17,9 +chrX 1531973 . G C 712 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=12.58;BaseQRankSum=0.46;DP=124;ExcessHet=0.0000;FS=3.670;MQ=60.00;MQRankSum=0;QD=12.58;ReadPosRankSum=-0.667;SOR=1.274;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,1662 0/1:30,29:59:99:.:742,0,771:16,14,19,10 +chrX 1532082 . C T 720 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=12.71;BaseQRankSum=-0.362;DP=126;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=12.71;ReadPosRankSum=1.373;SOR=0.770;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,1662 0/1:30,29:59:99:.:750,0,794:13,17,12,17 +chrX 1532138 . G A 2459 . AC=2;AF=0.667;AN=3;AS_AltDP=78;AS_QD=23.70;BaseQRankSum=2.726;DP=108;ExcessHet=0.0000;FS=11.548;MQ=59.96;MQRankSum=0;QD=23.70;ReadPosRankSum=0.376;SOR=0.163;VarDP=105 GT:AD:DP:GQ:PL:SB 1:0,53:53:99:1776,0:0,0,24,29 0/1:27,25:52:99:713,0,712:7,20,13,12 +chrX 1532323 . C CAT 3418.97 . AC=2;AF=0.667;AN=3;AS_AltDP=82;AS_QD=29.55;BaseQRankSum=0.67;DP=102;ExcessHet=0.0000;FS=5.910;MQ=59.41;MQRankSum=1.104;QD=36.02;ReadPosRankSum=-1.397;SOR=0.526;VarDP=96 GT:AD:DP:GQ:PL:SB 1:0,67:67:99:2892,0:0,0,38,29 0/1:14,15:29:99:566,0,543:5,9,6,9 +chrX 1532337 . T *,TATGTATATGATGTGTATATATACACATATGTATATGATGTGTATATACACAC 463.97 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=0,3;AS_QD=0.00,29.59;BaseQRankSum=0.832;DP=95;ExcessHet=0.0000;FS=2.702;MQ=58.15;MQRankSum=-3.883;QD=29.59;ReadPosRankSum=-1.704;SOR=0.959;VarDP=17 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,1800,1800 0/2:14,0,3:17:69:.:503,69,633,0,541,571:5,9,2,1 +chrX 1532370 . C T,* 3083 . AC=3,0;AF=1.00,0.00;AN=3;AS_AltDP=79,0;AS_QD=28.78,29.75;DP=98;ExcessHet=0.0000;FS=0.000;MQ=57.33;QD=39.41;SOR=0.881;VarDP=79 GT:AD:DP:GQ:PL:SB 1:0,62,0:62:99:2066,0,2066:0,0,35,27 1/1:0,17,0:17:53:1047,87,0,664,53,726:0,0,8,9 +chrX 1532390 . G A 163 . AC=1;AF=0.333;AN=3;AS_AltDP=6;AS_QD=13.79;BaseQRankSum=0.15;DP=87;ExcessHet=0.0000;FS=8.616;MQ=54.68;MQRankSum=-2.968;QD=13.79;ReadPosRankSum=-2.458;SOR=2.245;VarDP=14 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:59:99:59:.:.:0,1468 0|1:8,6:14:99:.:0|1:1532390_G_A:193,0,312:1532390:3,5,5,1 +chrX 1532408 . G GTGTGTATATACACA 227.97 . AC=1;AF=0.333;AN=3;AS_AltDP=8;AS_QD=8.61;BaseQRankSum=0.746;DP=93;ExcessHet=0.0000;FS=14.289;MQ=54.00;MQRankSum=-4.666;QD=8.61;ReadPosRankSum=-2.552;SOR=2.800;VarDP=31 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:59:99:59:.:.:0,1468 0|1:23,8:31:99:.:0|1:1532408_G_GTGTGTATATACACA:267,0,942:1532408:9,14,7,1 +chrX 1532414 . G GTATAT 224.97 . AC=1;AF=0.333;AN=3;AS_AltDP=8;AS_QD=8.25;BaseQRankSum=1.388;DP=94;ExcessHet=0.0000;FS=13.866;MQ=54.25;MQRankSum=-4.75;QD=8.25;ReadPosRankSum=-2.005;SOR=2.806;VarDP=32 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:59:99:59:.:.:0,1468 0|1:24,8:32:99:.:0|1:1532408_G_GTGTGTATATACACA:264,0,984:1532408:10,14,7,1 +chrX 1532421 . A G 279 . AC=1;AF=0.333;AN=3;AS_AltDP=8;AS_QD=20.60;BaseQRankSum=1.282;DP=94;ExcessHet=0.0000;FS=13.919;MQ=54.25;MQRankSum=-3.229;QD=20.60;ReadPosRankSum=-0.168;SOR=2.788;VarDP=15 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:59:99:59:.:.:0,1468 0|1:7,8:15:99:.:0|1:1532390_G_A:309,0,266:1532390:2,5,7,1 +chrX 1532448 . T TATG 361.97 . AC=1;AF=0.333;AN=3;AS_AltDP=10;AS_QD=28.64;BaseQRankSum=0;DP=95;ExcessHet=0.0000;FS=23.015;MQ=55.18;MQRankSum=-1.804;QD=28.64;ReadPosRankSum=2.622;SOR=3.220;VarDP=14 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:59:99:59:.:.:0,1468 0|1:4,10:14:99:.:0|1:1532390_G_A:401,0,135:1532390:0,4,9,1 +chrX 1532453 . GTATATATACACATATA G 2013.97 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=33.11;BaseQRankSum=0;DP=89;ExcessHet=0.0000;FS=10.268;MQ=56.46;MQRankSum=1.64;QD=33.11;ReadPosRankSum=-2.454;SOR=0.093;VarDP=62 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,48:48:99:.:.:1981,0:.:0,0,26,22 0|1:11,3:14:72:0|1:1532453_GTATATATACACATATA_G:72,0,446:1532453:9,2,0,3 +chrX 1532455 . A *,G 439 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=3,10;AS_QD=0.00,34.90;DP=87;ExcessHet=0.0000;FS=0.000;MQ=55.18;QD=36.08;SOR=1.022;VarDP=13 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,48,0:48:99:.:.:1981,0,1981:.:0,0,26,22 1|2:0,3,10:13:99:0|1:1532408_G_GTGTGTATATACACA:469,364,348,120,0,978:1532408:0,0,9,4 +chrX 1532471 . GTATAGATGTATATGTGTA G 2002.97 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=31.42;BaseQRankSum=0.897;DP=88;ExcessHet=0.0000;FS=11.167;MQ=56.42;MQRankSum=1.402;QD=31.42;ReadPosRankSum=-2.494;SOR=0.113;VarDP=65 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,48:48:99:.:.:1980,0:.:0,0,26,22 0|1:14,3:17:62:0|1:1532453_GTATATATACACATATA_G:62,0,572:1532453:11,3,0,3 +chrX 1532476 . G *,T 1404 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=3,12;AS_QD=0.00,31.44;DP=86;ExcessHet=0.0000;FS=0.000;MQ=55.44;QD=95.60;SOR=0.933;VarDP=15 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,48,0:48:99:.:.:1980,0,1980:.:0,0,26,22 1|2:0,3,12:15:87:0|1:1532390_G_A:1434,557,488,170,0,87:1532390:0,0,9,6 +chrX 1532482 . T *,TATG 599.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=3,14;AS_QD=0.00,30.73;DP=87;ExcessHet=0.0000;FS=0.000;MQ=56.04;QD=37.59;SOR=1.000;VarDP=17 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,48,0:48:99:.:.:1980,0,1980:.:0,0,26,22 1|2:0,3,14:17:99:0|1:1532408_G_GTGTGTATATACACA:639,535,519,119,0,924:1532408:0,0,11,6 +chrX 1532489 . A *,G 1488 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=3,14;AS_QD=0.00,36.76;DP=87;ExcessHet=0.0000;FS=0.000;MQ=56.04;QD=89.29;SOR=1.000;VarDP=17 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,48,0:48:99:.:.:1980,0,1980:.:0,0,26,22 1|2:0,3,14:17:81:0|1:1532390_G_A:1518,641,572,170,0,81:1532390:0,0,11,6 +chrX 1532510 . G T 412 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=12.28;BaseQRankSum=-0.505;DP=115;ExcessHet=0.0000;FS=7.666;MQ=58.33;MQRankSum=-1.049;QD=12.28;ReadPosRankSum=-1.28;SOR=1.144;VarDP=36 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:75:99:75:.:.:0,1003 0|1:22,14:36:99:.:0|1:1532408_G_GTGTGTATATACACA:442,0,873:1532408:8,14,9,5 +chrX 1532592 . G A 542 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=13.95;BaseQRankSum=-0.507;DP=121;ExcessHet=0.0000;FS=4.558;MQ=60.00;MQRankSum=0;QD=13.95;ReadPosRankSum=0.562;SOR=0.574;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:75:99:75:0,1003 0/1:19,22:41:99:.:572,0,468:12,7,10,12 +chrX 1532660 . G A 718 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=14.96;BaseQRankSum=0.758;DP=130;ExcessHet=0.0000;FS=2.448;MQ=60.00;MQRankSum=0;QD=14.96;ReadPosRankSum=0.818;SOR=0.392;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:75:99:75:0,1003 0/1:23,27:50:99:.:748,0,569:15,8,15,12 +chrX 1532727 . T C 634 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=12.07;BaseQRankSum=-1.287;DP=132;ExcessHet=0.0000;FS=2.346;MQ=59.95;MQRankSum=0.983;QD=12.07;ReadPosRankSum=0.961;SOR=1.162;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:75:99:75:0,1003 0/1:29,26:55:99:.:664,0,813:16,13,17,9 +chrX 1532791 . G C 3136 . AC=2;AF=0.667;AN=3;AS_AltDP=100;AS_QD=25.95;BaseQRankSum=1.31;DP=125;ExcessHet=0.0000;FS=4.539;MQ=59.59;MQRankSum=0.301;QD=25.95;ReadPosRankSum=-0.027;SOR=0.574;VarDP=122 GT:AD:DP:GQ:PL:SB 1:0,69:69:99:2278,0:0,0,28,41 0/1:22,31:53:99:888,0,555:13,9,19,12 +chrX 1532933 . A G 3015 . AC=3;AF=1.00;AN=3;AS_AltDP=92;AS_QD=32.74;BaseQRankSum=3.238;DP=95;ExcessHet=0.0000;FS=0.000;MQ=59.95;MQRankSum=0;QD=32.74;ReadPosRankSum=-0.452;SOR=0.324;VarDP=93 GT:AD:DP:GQ:PL:SB 1:0,47:47:99:1552,0:0,0,27,20 1/1:1,45:46:99:1493,113,0:1,0,24,21 +chrX 1532997 . T C 1050 . AC=2;AF=0.667;AN=3;AS_AltDP=37;AS_QD=18.00;BaseQRankSum=-0.247;DP=65;ExcessHet=0.0000;FS=8.323;MQ=59.55;MQRankSum=0.81;QD=18.00;ReadPosRankSum=0.56;SOR=0.148;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:773,0:0,0,16,8 0/1:23,13:36:99:307,0,661:19,4,7,6 +chrX 1533002 . CAAA C,CA 641.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=19,14;AS_QD=16.09,13.55;DP=103;ExcessHet=0.0000;FS=78.483;MQ=58.26;MQRankSum=2.166;QD=14.19;SOR=3.151;VarDP=48 GT:AD:DP:GQ:PL:SB 1:10,13,0:23:99:288,0,509:0,10,12,1 0/2:5,6,14:25:17:393,134,375,0,17,46:0,5,16,4 +chrX 1533125 . C T 2091 . AC=2;AF=0.667;AN=3;AS_AltDP=67;AS_QD=22.33;BaseQRankSum=2.206;DP=99;ExcessHet=0.0000;FS=0.858;MQ=60.00;MQRankSum=0;QD=22.33;ReadPosRankSum=2.363;SOR=0.899;VarDP=95 GT:AD:DP:GQ:PL:SB 1:0,53:53:99:1760,0:0,0,29,24 0/1:28,14:42:99:361,0,737:15,13,10,4 +chrX 1533213 . G C 2240 . AC=2;AF=0.667;AN=3;AS_AltDP=72;AS_QD=21.83;BaseQRankSum=1.059;DP=109;ExcessHet=0.0000;FS=8.549;MQ=60.00;MQRankSum=0;QD=21.83;ReadPosRankSum=-0.061;SOR=0.569;VarDP=104 GT:AD:DP:GQ:PL:SB 1:0,54:54:99:1805,0:0,0,28,26 0/1:32,18:50:99:465,0,912:12,20,11,7 +chrX 1533290 . T C 1032 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=18.31;BaseQRankSum=-0.274;DP=127;ExcessHet=0.0000;FS=9.766;MQ=60.00;MQRankSum=0;QD=18.31;ReadPosRankSum=-0.45;SOR=1.181;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:69:99:69:0,238 0/1:20,38:58:99:.:1062,0,477:12,8,14,24 +chrX 1533480 . A G 875 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=15.34;BaseQRankSum=0.176;DP=130;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=15.34;ReadPosRankSum=-0.401;SOR=0.598;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:69:99:69:0,238 0/1:24,35:59:99:.:905,0,649:13,11,18,17 +chrX 1533541 . TTATATATTATATACTTATATATTTATTATTTAAA T 1050.97 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=19.82;BaseQRankSum=1.337;DP=130;ExcessHet=0.0000;FS=5.456;MQ=60.00;MQRankSum=0;QD=19.82;ReadPosRankSum=-0.295;SOR=0.908;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:69:99:69:0,238 0/1:26,29:55:99:.:1090,0,961:11,15,17,12 +chrX 1533566 . AT A,* 5065.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=97,31;AS_QD=29.36,0.00;DP=129;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=39.88;SOR=0.824;VarDP=128 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,74,0:74:99:.:.:2933,0,2933:.:0,0,33,41 1|2:0,23,31:54:99:0|1:1533566_AT_*:2172,1215,1142,756,0,624:1533566:0,0,27,27 +chrX 1533569 . ATTTAAATATATTATATACTTATATATTTATT A,* 5025.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=97,31;AS_QD=26.02,0.00;DP=145;ExcessHet=0.0000;FS=5.832;MQ=60.00;MQRankSum=0;QD=37.52;SOR=0.425;VarDP=135 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:7,74,0:81:99:.:.:2905,0,2933:.:5,2,33,41 1|2:0,23,31:54:99:0|1:1533566_AT_*:2160,1220,1298,741,0,606:1533566:0,0,27,27 +chrX 1533803 . T C 1853 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=20.69;BaseQRankSum=2.144;DP=96;ExcessHet=0.0000;FS=5.889;MQ=60.00;MQRankSum=0;QD=20.69;ReadPosRankSum=0.339;SOR=0.846;VarDP=91 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,45:46:99:.:.:1419,0:.:0,1,25,20 0|1:27,18:45:99:0|1:1533803_T_C:464,0,927:1533803:12,15,11,7 +chrX 1533838 . T TTTA 560.97 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=17.65;BaseQRankSum=-0.505;DP=109;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=17.65;ReadPosRankSum=0.57;SOR=0.512;VarDP=34 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:71:99:71:.:.:0,1449 0|1:18,16:34:99:.:1|0:1533803_T_C:600,0,698:1533803:8,10,8,8 +chrX 1534032 . C G 516 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=9.93;BaseQRankSum=-0.616;DP=130;ExcessHet=0.0000;FS=12.789;MQ=60.00;MQRankSum=0;QD=9.93;ReadPosRankSum=-0.518;SOR=0.717;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:71:99:71:0,1449 0/1:31,24:55:99:.:546,0,808:22,9,10,14 +chrX 1534175 . A G 3744 . AC=2;AF=0.667;AN=3;AS_AltDP=131;AS_QD=22.73;BaseQRankSum=1.761;DP=172;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=22.73;ReadPosRankSum=0.271;SOR=0.667;VarDP=166 GT:AD:DP:GQ:PL:SB 1:1,91:92:99:2724,0:0,1,42,49 0/1:34,40:74:99:1050,0,850:16,18,19,21 +chrX 1534746 . G C 729 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=10.40;BaseQRankSum=0.402;DP=139;ExcessHet=0.0000;FS=6.499;MQ=60.00;MQRankSum=0;QD=10.40;ReadPosRankSum=0.246;SOR=1.542;VarDP=73 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,1170 0/1:42,31:73:99:.:759,0,1121:23,19,22,9 +chrX 1534758 . G A 776 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=10.89;BaseQRankSum=1.625;DP=140;ExcessHet=0.0000;FS=8.152;MQ=60.00;MQRankSum=0;QD=10.89;ReadPosRankSum=-0.871;SOR=1.619;VarDP=74 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,1170 0/1:43,31:74:99:.:806,0,1117:23,20,22,9 +chrX 1535184 . C CTTT,CTTTTT,CTT 2027.97 . AC=1,1,1;AF=0.333,0.333,0.333;AN=3;AS_AltDP=11,20,6;AS_QD=22.60,32.24,32.25;DP=89;ExcessHet=0.0000;FS=0.000;MQ=57.71;QD=55.86;SOR=0.746;VarDP=37 GT:AD:DP:GQ:PL:SB 1:0,11,4,0:15:99:1068,0,257,696:0,0,6,9 2/3:0,0,16,6:22:99:999,867,834,189,210,157,527,515,0,446:0,0,12,10 +chrX 1535718 . CACACACACAG C 651.97 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=13.55;BaseQRankSum=0.522;DP=122;ExcessHet=0.0000;FS=0.000;MQ=59.92;MQRankSum=-0.981;QD=13.55;ReadPosRankSum=1.931;SOR=0.634;VarDP=51 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:59:99:59:.:.:0,655 0|1:26,25:51:99:.:0|1:1535718_CACACACACAG_C:691,0,991:1535718:10,16,10,15 +chrX 1535726 . CAG C,* 2662.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=49,25;AS_QD=29.03,0.00;DP=102;ExcessHet=0.0000;FS=0.000;MQ=59.95;QD=36.51;SOR=0.864;VarDP=74 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,28,0:28:99:.:.:1181,0,1183:.:0,0,15,13 1|2:0,21,25:46:99:1|0:1535718_CACACACACAG_C:1521,818,1035,797,0,985:1535718:0,0,19,27 +chrX 1537516 . C G 4355 . AC=3;AF=1.00;AN=3;AS_AltDP=137;AS_QD=31.78;BaseQRankSum=1.799;DP=145;ExcessHet=0.0000;FS=3.074;MQ=60.00;MQRankSum=0;QD=31.78;ReadPosRankSum=0.739;SOR=0.293;VarDP=138 GT:AD:DP:GQ:PL:SB 1:1,67:68:99:2158,0:0,1,35,32 1/1:0,70:70:99:2227,209,0:0,0,35,35 +chrX 1537818 . A G 3920 . AC=3;AF=1.00;AN=3;AS_AltDP=120;AS_QD=32.92;DP=121;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.92;SOR=0.726;VarDP=120 GT:AD:DP:GQ:PL:SB 1:0,61:61:99:2039,0:0,0,25,36 1/1:0,59:59:99:1911,177,0:0,0,34,25 +chrX 1537954 . T C 2065 . AC=1;AF=0.333;AN=3;AS_AltDP=65;AS_QD=32.23;DP=124;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.23;SOR=0.723;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,65:65:99:.:2095,0:0,0,33,32 0/0:.:59:13:59:0,13,1633 +chrX 1538072 . A G 3158 . AC=3;AF=1.00;AN=3;AS_AltDP=98;AS_QD=32.53;DP=103;ExcessHet=0.0000;FS=0.000;MQ=59.84;QD=32.53;SOR=0.776;VarDP=98 GT:AD:DP:GQ:PL:SB 1:0,62:62:99:1994,0:0,0,31,31 1/1:0,36:36:99:1194,108,0:0,0,16,20 +chrX 1538171 . C CAAACAAACAAACAAACAAAG 2667.97 . AC=1;AF=0.333;AN=3;AS_AltDP=62;AS_QD=31.26;DP=103;ExcessHet=0.0000;FS=0.000;MQ=58.86;QD=43.66;SOR=0.826;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,62:62:99:.:2707,0:0,0,33,29 0/0:.:48:20:37:0,20,1015 +chrX 1538189 . T G 2369 . AC=1;AF=0.333;AN=3;AS_AltDP=59;AS_QD=30.98;DP=99;ExcessHet=0.0000;FS=0.000;MQ=58.75;QD=40.66;SOR=0.871;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,59:59:99:.:2399,0:0,0,32,27 0/0:.:48:20:37:0,20,1015 +chrX 1538320 . A G 2471 . AC=1;AF=0.333;AN=3;AS_AltDP=57;AS_QD=30.57;DP=97;ExcessHet=0.0000;FS=0.000;MQ=59.78;QD=43.88;SOR=0.800;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,57:57:99:.:2501,0:0,0,30,27 0/0:.:48:20:37:0,20,1015 +chrX 1538331 . T G 2574 . AC=1;AF=0.333;AN=3;AS_AltDP=60;AS_QD=26.71;DP=97;ExcessHet=0.0000;FS=0.000;MQ=59.78;QD=43.40;SOR=0.986;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,60:60:99:.:2604,0:0,0,34,26 0/0:.:48:20:37:0,20,1015 +chrX 1538438 . A G 792 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=29.36;DP=65;ExcessHet=0.0000;FS=0.000;MQ=59.43;QD=29.36;SOR=1.382;VarDP=28 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,28:28:99:.:822,0:0,0,18,10 0/0:.:48:20:37:0,20,1015 +chrX 1538456 . C CAAA 1172.97 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=32.28;DP=76;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=39.10;SOR=1.044;VarDP=31 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,31:31:99:.:1212,0:0,0,13,18 0/0:.:48:20:37:0,20,1015 +chrX 1538619 . G A 1449 . AC=1;AF=0.333;AN=3;AS_AltDP=45;AS_QD=31.47;BaseQRankSum=3.668;DP=90;ExcessHet=0.0000;FS=3.104;MQ=59.68;MQRankSum=4.849;QD=31.47;ReadPosRankSum=-0.765;SOR=0.182;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 1:2,45:47:99:.:1479,0:0,2,23,22 0/0:.:48:20:37:0,20,1015 +chrX 1538677 . A G 1607 . AC=1;AF=0.333;AN=3;AS_AltDP=50;AS_QD=32.74;DP=88;ExcessHet=0.0000;FS=0.000;MQ=59.67;QD=32.74;SOR=0.952;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,50:50:99:.:1637,0:0,0,28,22 0/0:.:48:20:37:0,20,1015 +chrX 1538737 . G A 1582 . AC=1;AF=0.333;AN=3;AS_AltDP=43;AS_QD=29.04;DP=83;ExcessHet=0.0000;FS=0.000;MQ=59.51;QD=37.49;SOR=1.609;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,43:43:99:.:1612,0:0,0,29,14 0/0:.:48:20:37:0,20,1015 +chrX 1538749 . C CA 1500.97 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=26.55;BaseQRankSum=0.599;DP=89;ExcessHet=0.0000;FS=0.000;MQ=59.28;MQRankSum=-0.527;QD=26.55;ReadPosRankSum=-1.151;SOR=0.503;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,37:37:99:1293,0:0,0,24,13 0/1:6,15:21:51:247,0,51:4,2,6,9 +chrX 1538843 . C G 1829 . AC=1;AF=0.333;AN=3;AS_AltDP=58;AS_QD=32.05;DP=111;ExcessHet=0.0000;FS=0.000;MQ=59.87;QD=32.05;SOR=0.836;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,58:58:99:.:1859,0:0,0,27,31 0/0:.:55:34:49:0,34,1126 +chrX 1538984 . G A 1476 . AC=1;AF=0.333;AN=3;AS_AltDP=44;AS_QD=33.47;BaseQRankSum=4.851;DP=94;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=33.47;ReadPosRankSum=-1.656;SOR=0.303;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,44:45:99:.:1506,0:0,1,20,24 0/0:.:55:34:49:0,34,1126 +chrX 1539036 . G C 1337 . AC=1;AF=0.333;AN=3;AS_AltDP=44;AS_QD=31.07;DP=94;ExcessHet=0.0000;FS=0.000;MQ=59.63;QD=31.07;SOR=0.693;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,44:44:99:.:1367,0:0,0,22,22 0/0:.:55:34:49:0,34,1126 +chrX 1539050 . C A,CAA 1064 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=3,29;AS_QD=0.00,31.04;DP=105;ExcessHet=0.0000;FS=0.000;MQ=58.54;QD=34.19;SOR=1.284;VarDP=32 GT:AD:DP:GQ:MIN_DP:PL:SB 2:0,3,29:32:99:.:1094,1117,0:0,0,20,12 0/0:.:55:34:49:0,34,1126,34,1126,1126 +chrX 1539449 . A C 1552 . AC=1;AF=0.333;AN=3;AS_AltDP=49;AS_QD=32.29;DP=103;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.29;SOR=0.733;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,49:49:99:.:1582,0:0,0,24,25 0/0:.:55:34:49:0,34,1126 +chrX 1539482 . G C 1830 . AC=1;AF=0.333;AN=3;AS_AltDP=58;AS_QD=32.07;DP=109;ExcessHet=0.0000;FS=0.000;MQ=59.62;QD=32.07;SOR=1.085;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,58:58:99:.:1860,0:0,0,24,34 0/0:.:55:34:49:0,34,1126 +chrX 1539512 . C T 809 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=11.82;BaseQRankSum=-0.436;DP=129;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=11.82;ReadPosRankSum=0.265;SOR=0.752;VarDP=71 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:99:56:0,1701 0/1:36,35:71:99:.:839,0,879:17,19,16,19 +chrX 1539539 . C A 1839 . AC=1;AF=0.333;AN=3;AS_AltDP=57;AS_QD=32.79;DP=87;ExcessHet=0.0000;FS=0.000;MQ=59.60;QD=32.79;SOR=0.800;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,57:57:99:.:1869,0:0,0,27,30 0/0:.:41:31:30:0,31,873 +chrX 1540050 . G T 1979 . AC=1;AF=0.333;AN=3;AS_AltDP=61;AS_QD=32.40;BaseQRankSum=2.928;DP=95;ExcessHet=0.0000;FS=0.000;MQ=59.74;MQRankSum=0;QD=32.40;ReadPosRankSum=0.419;SOR=0.274;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,61:62:99:.:2009,0:1,0,30,31 0/0:.:41:31:30:0,31,873 +chrX 1540219 . C CA 898.97 . AC=1;AF=0.333;AN=3;AS_AltDP=39;AS_QD=24.05;DP=84;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=24.05;SOR=0.850;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,39:39:99:.:938,0:0,0,18,21 0/0:.:41:31:30:0,31,873 +chrX 1540657 . C T 2155 . AC=1;AF=0.333;AN=3;AS_AltDP=59;AS_QD=27.55;DP=89;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=37.03;SOR=0.726;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,59:59:99:.:2185,0:0,0,29,30 0/0:.:41:31:30:0,31,873 +chrX 1540734 . T C 1414 . AC=1;AF=0.333;AN=3;AS_AltDP=44;AS_QD=32.82;DP=75;ExcessHet=0.0000;FS=0.000;MQ=59.89;QD=32.82;SOR=0.990;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,44:44:99:.:1444,0:0,0,25,19 0/0:.:41:31:30:0,31,873 +chrX 1540819 . CAAAAAA C,CAAAAA 393.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=10,7;AS_QD=15.63,2.76;BaseQRankSum=0.21;DP=84;ExcessHet=0.0000;FS=44.143;MQ=58.45;MQRankSum=-0.249;QD=13.97;ReadPosRankSum=0.389;SOR=2.645;VarDP=31 GT:AD:DP:GQ:PL:SB 1:3,10,0:13:99:375,0,452:0,3,8,2 0/2:11,0,7:18:58:58,90,234,0,144,124:1,10,6,1 +chrX 1541077 . C A 2357 . AC=1;AF=0.333;AN=3;AS_AltDP=71;AS_QD=33.62;DP=134;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.62;SOR=0.840;VarDP=71 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,71:71:99:.:2387,0:0,0,38,33 0/0:.:58:54:58:0,54,1250 +chrX 1541201 . G T 2396 . AC=1;AF=0.333;AN=3;AS_AltDP=77;AS_QD=31.10;BaseQRankSum=2.208;DP=143;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=31.10;ReadPosRankSum=-0.311;SOR=0.233;VarDP=78 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,77:78:99:.:2426,0:0,1,38,39 0/0:.:58:54:58:0,54,1250 +chrX 1541225 . G C 3508 . AC=1;AF=0.333;AN=3;AS_AltDP=80;AS_QD=28.27;DP=139;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.23;SOR=0.743;VarDP=80 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,80:80:99:.:3538,0:0,0,39,41 0/0:.:58:54:58:0,54,1250 +chrX 1541230 . C G 3477 . AC=1;AF=0.333;AN=3;AS_AltDP=79;AS_QD=28.55;DP=138;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.39;SOR=0.718;VarDP=79 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,79:79:99:.:3507,0:0,0,39,40 0/0:.:58:54:58:0,54,1250 +chrX 1541278 . G A 2283 . AC=1;AF=0.333;AN=3;AS_AltDP=70;AS_QD=33.04;DP=132;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.04;SOR=1.011;VarDP=70 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,70:70:99:.:2313,0:0,0,30,40 0/0:.:58:54:58:0,54,1250 +chrX 1541376 . A G 2335 . AC=1;AF=0.333;AN=3;AS_AltDP=73;AS_QD=32.40;DP=132;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.40;SOR=1.257;VarDP=73 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,73:73:99:.:2365,0:0,0,28,45 0/0:.:58:54:58:0,54,1250 +chrX 1541533 . C T 1989 . AC=1;AF=0.333;AN=3;AS_AltDP=62;AS_QD=32.56;DP=121;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.56;SOR=1.143;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,62:62:99:.:2019,0:0,0,37,25 0/0:.:58:54:58:0,54,1250 +chrX 1541900 . A G 1518 . AC=1;AF=0.333;AN=3;AS_AltDP=48;AS_QD=30.96;BaseQRankSum=3.087;DP=109;ExcessHet=0.0000;FS=0.000;MQ=59.43;MQRankSum=-0.301;QD=30.96;ReadPosRankSum=1.114;SOR=1.426;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 1:2,48:50:99:.:1548,0:1,1,17,31 0/0:.:58:54:58:0,54,1250 +chrX 1541934 . T C 1538 . AC=1;AF=0.333;AN=3;AS_AltDP=50;AS_QD=30.75;BaseQRankSum=-0.507;DP=112;ExcessHet=0.0000;FS=0.000;MQ=59.77;MQRankSum=-0.101;QD=30.75;ReadPosRankSum=-1.665;SOR=0.335;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,50:51:99:.:1568,0:0,1,22,28 0/0:.:58:54:58:0,54,1250 +chrX 1542252 . C T 566 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=10.84;BaseQRankSum=1.73;DP=121;ExcessHet=0.0000;FS=2.258;MQ=59.24;MQRankSum=-1.143;QD=10.84;ReadPosRankSum=2.032;SOR=1.022;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,1325 0/1:32,23:55:99:.:596,0,781:17,15,14,9 +chrX 1543418 . G A 2065 . AC=1;AF=0.333;AN=3;AS_AltDP=62;AS_QD=33.79;DP=119;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.79;SOR=0.693;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,62:62:99:.:2095,0:0,0,31,31 0/0:.:58:47:54:0,47,1050 +chrX 1543610 . T A 1596 . AC=1;AF=0.333;AN=3;AS_AltDP=50;AS_QD=32.52;DP=111;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.52;SOR=1.051;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,50:50:99:.:1626,0:0,0,29,21 0/0:.:58:47:54:0,47,1050 +chrX 1543633 . A G 1881 . AC=1;AF=0.333;AN=3;AS_AltDP=58;AS_QD=32.95;DP=114;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.95;SOR=1.085;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,58:58:99:.:1911,0:0,0,34,24 0/0:.:58:47:54:0,47,1050 +chrX 1543885 . G C 1300 . AC=1;AF=0.333;AN=3;AS_AltDP=41;AS_QD=32.44;DP=97;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.44;SOR=0.954;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,41:41:99:.:1330,0:0,0,23,18 0/0:.:58:47:54:0,47,1050 +chrX 1543977 . C G 1773 . AC=1;AF=0.333;AN=3;AS_AltDP=58;AS_QD=31.09;DP=113;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.09;SOR=0.693;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,58:58:99:.:1803,0:0,0,29,29 0/0:.:58:47:54:0,47,1050 +chrX 1544028 . C T 1911 . AC=1;AF=0.333;AN=3;AS_AltDP=58;AS_QD=33.47;DP=113;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.47;SOR=0.914;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,58:58:99:.:1941,0:0,0,32,26 0/0:.:58:47:54:0,47,1050 +chrX 1544124 . C G 1924 . AC=1;AF=0.333;AN=3;AS_AltDP=61;AS_QD=32.03;DP=117;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.03;SOR=1.022;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,61:61:99:.:1954,0:0,0,26,35 0/0:.:58:47:54:0,47,1050 +chrX 1544200 . A ATTTT 1829.97 . AC=1;AF=0.333;AN=3;AS_AltDP=43;AS_QD=24.89;DP=112;ExcessHet=0.0000;FS=0.000;MQ=59.44;QD=43.47;SOR=1.312;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,43:43:99:.:1869,0:0,0,16,27 0/0:.:58:47:54:0,47,1050 +chrX 1544317 . C T 1772 . AC=1;AF=0.333;AN=3;AS_AltDP=53;AS_QD=34.00;DP=108;ExcessHet=0.0000;FS=0.000;MQ=59.91;QD=34.00;SOR=1.287;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,53:53:99:.:1802,0:0,0,33,20 0/0:.:58:47:54:0,47,1050 +chrX 1544722 . A T 2294 . AC=1;AF=0.333;AN=3;AS_AltDP=68;AS_QD=34.18;DP=123;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=34.18;SOR=1.022;VarDP=68 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,68:68:99:.:2324,0:0,0,39,29 0/0:.:58:47:54:0,47,1050 +chrX 1544754 . A G 2058 . AC=1;AF=0.333;AN=3;AS_AltDP=67;AS_QD=31.16;DP=123;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.16;SOR=1.230;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,67:67:99:.:2088,0:0,0,41,26 0/0:.:58:47:54:0,47,1050 +chrX 1544963 . A G 60 . AC=1;AF=0.333;AN=3;AS_AltDP=5;AS_QD=3.21;BaseQRankSum=-1.597;DP=91;ExcessHet=0.0000;FS=0.000;MQ=59.60;MQRankSum=-1.074;QD=3.21;ReadPosRankSum=0.36;SOR=0.665;VarDP=28 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:99:63:.:.:0,1300 0|1:23,5:28:90:.:0|1:1544963_A_G:90,0,829:1544963:17,6,4,1 +chrX 1544965 . A C 60 . AC=1;AF=0.333;AN=3;AS_AltDP=5;AS_QD=3.21;BaseQRankSum=-1.691;DP=91;ExcessHet=0.0000;FS=0.000;MQ=59.60;MQRankSum=-1.074;QD=3.21;ReadPosRankSum=0.3;SOR=0.665;VarDP=28 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:99:63:.:.:0,1300 0|1:23,5:28:90:.:0|1:1544963_A_G:90,0,829:1544963:17,6,4,1 +chrX 1544983 . CA C,CAA,CAAA 228.97 . AC=1,0,1;AF=0.333,0.00,0.333;AN=3;AS_AltDP=15,1,1;AS_QD=9.58,1.08,1.58;BaseQRankSum=-0.645;DP=91;ExcessHet=0.0000;FS=6.029;MQ=59.29;MQRankSum=0;QD=9.57;ReadPosRankSum=1.335;SOR=0.157;VarDP=28 GT:AD:DP:GQ:PL:SB 1:2,15,0,0:17:99:249,0,278,278:1,1,10,5 0/3:9,0,1,1:11:6:19,34,222,6,168,144,0,208,153,230:8,1,0,2 +chrX 1545058 . T C 2092 . AC=1;AF=0.333;AN=3;AS_AltDP=68;AS_QD=31.21;DP=118;ExcessHet=0.0000;FS=0.000;MQ=59.68;QD=31.21;SOR=0.949;VarDP=68 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,68:68:99:.:2122,0:0,0,38,30 0/0:.:54:33:49:0,33,1215 +chrX 1545201 . C CAA 986.97 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=29.31;DP=100;ExcessHet=0.0000;FS=0.000;MQ=59.03;QD=29.31;SOR=2.115;VarDP=35 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,35:35:99:.:1026,0:0,0,9,26 0/0:.:41:0:41:0,0,986 +chrX 1545411 . A G 1698 . AC=1;AF=0.333;AN=3;AS_AltDP=52;AS_QD=33.23;DP=112;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.23;SOR=0.770;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,52:52:99:.:1728,0:0,0,27,25 0/0:.:60:42:60:0,42,884 +chrX 1545499 . A T 2212 . AC=1;AF=0.333;AN=3;AS_AltDP=66;AS_QD=33.97;DP=129;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.97;SOR=0.957;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,66:66:99:.:2242,0:0,0,37,29 0/0:.:60:42:60:0,42,884 +chrX 1545604 . A G 2974 . AC=1;AF=0.333;AN=3;AS_AltDP=70;AS_QD=30.54;DP=131;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=42.91;SOR=1.011;VarDP=70 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,70:70:99:.:3004,0:0,0,40,30 0/0:.:60:42:60:0,42,884 +chrX 1545620 . C A 3052 . AC=1;AF=0.333;AN=3;AS_AltDP=73;AS_QD=29.23;DP=133;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=42.22;SOR=1.032;VarDP=73 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,73:73:99:.:3082,0:0,0,42,31 0/0:.:60:42:60:0,42,884 +chrX 1545777 . A AT 2818.97 . AC=1;AF=0.333;AN=3;AS_AltDP=80;AS_QD=29.04;DP=145;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=35.73;SOR=0.850;VarDP=80 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,80:80:99:.:2858,0:0,0,43,37 0/0:.:60:42:60:0,42,884 +chrX 1545873 . A G 2585 . AC=1;AF=0.333;AN=3;AS_AltDP=85;AS_QD=30.76;DP=151;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.76;SOR=0.867;VarDP=85 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,85:85:99:.:2615,0:0,0,39,46 0/0:.:60:42:60:0,42,884 +chrX 1547491 . G T 2056 . AC=1;AF=0.333;AN=3;AS_AltDP=64;AS_QD=31.61;BaseQRankSum=1.684;DP=130;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=31.61;ReadPosRankSum=-1.066;SOR=0.892;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 1:2,64:66:99:.:2086,0:1,1,35,29 0/0:.:63:43:63:0,43,1285 +chrX 1548307 . C T 1641 . AC=1;AF=0.333;AN=3;AS_AltDP=53;AS_QD=31.53;DP=118;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.53;SOR=0.981;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,53:53:99:.:1671,0:0,0,30,23 0/0:.:66:29:62:0,29,1333 +chrX 1548588 . C G 1851 . AC=1;AF=0.333;AN=3;AS_AltDP=57;AS_QD=33.00;DP=124;ExcessHet=0.0000;FS=0.000;MQ=59.27;QD=33.00;SOR=0.728;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,57:57:99:.:1881,0:0,0,28,29 0/0:.:66:29:62:0,29,1333 +chrX 1548846 . A AC 2974.97 . AC=1;AF=0.333;AN=3;AS_AltDP=71;AS_QD=33.38;DP=121;ExcessHet=0.0000;FS=0.000;MQ=59.46;QD=42.45;SOR=1.042;VarDP=71 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,71:71:99:.:3014,0:0,0,30,41 0/0:.:49:28:48:0,28,982 +chrX 1548847 . A ACACACAC,ACACACACACAC 3016.97 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=1,47;AS_QD=28.71,33.17;DP=122;ExcessHet=0.0000;FS=0.000;MQ=59.47;QD=63.67;SOR=1.179;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 2:0,1,47:48:99:.:3056,1928,0:0,0,19,29 0/0:.:49:28:48:0,28,982,28,982,982 +chrX 1548863 . A C 2654 . AC=1;AF=0.333;AN=3;AS_AltDP=60;AS_QD=30.60;DP=108;ExcessHet=0.0000;FS=0.000;MQ=59.35;QD=44.73;SOR=1.160;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,60:60:99:.:2684,0:0,0,24,36 0/0:.:49:28:48:0,28,982 +chrX 1548865 . A C 2654 . AC=1;AF=0.333;AN=3;AS_AltDP=60;AS_QD=26.97;DP=108;ExcessHet=0.0000;FS=0.000;MQ=59.35;QD=44.73;SOR=1.160;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,60:60:99:.:2684,0:0,0,24,36 0/0:.:49:28:48:0,28,982 +chrX 1548867 . A C 2597 . AC=1;AF=0.333;AN=3;AS_AltDP=59;AS_QD=30.44;DP=107;ExcessHet=0.0000;FS=0.000;MQ=59.33;QD=44.53;SOR=1.123;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,59:59:99:.:2627,0:0,0,24,35 0/0:.:49:28:48:0,28,982 +chrX 1548869 . A C 2552 . AC=1;AF=0.333;AN=3;AS_AltDP=58;AS_QD=32.17;DP=106;ExcessHet=0.0000;FS=0.000;MQ=59.32;QD=44.52;SOR=1.085;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,58:58:99:.:2582,0:0,0,24,34 0/0:.:49:28:48:0,28,982 +chrX 1550008 . C A 32 . AC=1;AF=0.333;AN=3;AS_AltDP=8;AS_QD=1.41;BaseQRankSum=-2.587;DP=118;ExcessHet=0.0000;FS=33.701;MQ=59.69;MQRankSum=0;QD=1.41;ReadPosRankSum=3.258;SOR=4.397;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:99:66:0,945 0/1:36,8:44:62:.:62,0,1005:25,11,0,8 +chrX 1550022 . CA C,AA 859 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=0,25;AS_QD=13.50,32.93;BaseQRankSum=2.036;DP=111;ExcessHet=0.0000;FS=3.123;MQ=58.55;MQRankSum=-0.306;QD=32.93;ReadPosRankSum=-0.185;SOR=0.121;VarDP=27 GT:AD:DP:GQ:MIN_DP:PL:SB 2:2,0,25:27:99:.:889,862,0:0,2,12,13 0/0:.:64:93:64:0,93,1216,93,1216,1216 +chrX 1550023 . A *,C,AC 804 . AC=0,1,0;AF=0.00,0.333,0.00;AN=3;AS_AltDP=0,19,1;AS_QD=0.00,30.76,33.41;BaseQRankSum=1.191;DP=111;ExcessHet=0.0000;FS=7.104;MQ=58.55;MQRankSum=-0.158;QD=37.91;ReadPosRankSum=-0.057;SOR=0.787;VarDP=22 GT:AD:DP:GQ:MIN_DP:PL:SB 2:2,0,19,1:22:99:.:834,806,0,533:0,2,12,8 0/0:.:64:93:64:0,93,1216,93,1216,1216,93,1216,1216,1216 +chrX 1550390 . A G 3692 . AC=3;AF=1.00;AN=3;AS_AltDP=114;AS_QD=32.65;DP=120;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.65;SOR=0.765;VarDP=114 GT:AD:DP:GQ:PL:SB 1:0,55:55:99:1808,0:0,0,25,30 1/1:0,59:59:99:1914,177,0:0,0,30,29 +chrX 1550510 . C T 2010 . AC=1;AF=0.333;AN=3;AS_AltDP=63;AS_QD=32.38;DP=111;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.38;SOR=0.933;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,63:63:99:.:2040,0:0,0,28,35 0/0:.:54:22:45:0,22,1261 +chrX 1550851 . CG C 1576.97 . AC=1;AF=0.333;AN=3;AS_AltDP=47;AS_QD=33.67;BaseQRankSum=-0.758;DP=99;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=33.67;ReadPosRankSum=-0.506;SOR=0.277;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,47:48:99:.:1616,0:1,0,25,22 0/0:.:54:22:45:0,22,1261 +chrX 1550943 . C T 1597 . AC=1;AF=0.333;AN=3;AS_AltDP=51;AS_QD=31.90;DP=100;ExcessHet=0.0000;FS=0.000;MQ=59.77;QD=31.90;SOR=0.900;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,51:51:99:.:1627,0:0,0,23,28 0/0:.:54:22:45:0,22,1261 +chrX 1550973 . C T 2397 . AC=1;AF=0.333;AN=3;AS_AltDP=57;AS_QD=30.92;DP=104;ExcessHet=0.0000;FS=0.000;MQ=59.79;QD=42.58;SOR=0.960;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,57:57:99:.:2427,0:0,0,25,32 0/0:.:54:22:45:0,22,1261 +chrX 1550995 . A G 2605 . AC=1;AF=0.333;AN=3;AS_AltDP=59;AS_QD=30.95;DP=104;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.66;SOR=0.796;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,59:59:99:.:2635,0:0,0,28,31 0/0:.:54:22:45:0,22,1261 +chrX 1551001 . G A 2755 . AC=1;AF=0.333;AN=3;AS_AltDP=63;AS_QD=26.09;DP=108;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.21;SOR=0.859;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,63:63:99:.:2785,0:0,0,34,29 0/0:.:54:22:45:0,22,1261 +chrX 1551005 . GA G 2520.97 . AC=1;AF=0.333;AN=3;AS_AltDP=58;AS_QD=33.46;DP=106;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.14;SOR=0.997;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,58:58:99:.:2560,0:0,0,33,25 0/0:.:54:22:45:0,22,1261 +chrX 1551971 . T A 102 . AC=1;AF=0.333;AN=3;AS_AltDP=10;AS_QD=3.57;BaseQRankSum=-1.863;DP=108;ExcessHet=0.0000;FS=1.399;MQ=60.00;MQRankSum=0;QD=3.57;ReadPosRankSum=0.583;SOR=0.996;VarDP=37 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:65:99:65:.:.:0,692 0|1:27,10:37:99:.:0|1:1551971_T_A:132,0,905:1551971:14,13,6,4 +chrX 1551989 . AAGAG A 2249.97 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=30.93;BaseQRankSum=0.938;DP=81;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=30.93;ReadPosRankSum=0.161;SOR=0.749;VarDP=74 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,36:37:99:.:.:1506,0:.:1,0,26,10 0|1:16,21:37:99:0|1:1551971_T_A:783,0,567:1551971:10,6,11,10 +chrX 1552425 . GGAAA G 443.97 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=14.21;BaseQRankSum=-0.233;DP=87;ExcessHet=0.0000;FS=16.236;MQ=59.36;MQRankSum=0.847;QD=14.21;ReadPosRankSum=1.762;SOR=3.597;VarDP=34 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:59:47:48:.:.:0,47 0|1:21,13:34:99:.:0|1:1552425_GGAAA_G:483,0,811:1552425:11,10,12,1 +chrX 1552480 . AAAGG A,GAAGG 559 . AC=1,0;AF=0.333,0.00;AN=3;AS_AltDP=16,2;AS_QD=17.32,0.00;BaseQRankSum=0.188;DP=91;ExcessHet=0.0000;FS=1.480;MQ=59.42;MQRankSum=-0.944;QD=16.36;ReadPosRankSum=0.412;SOR=0.324;VarDP=36 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:47:48:0,47,47 0/1:18,16,2:36:99:.:589,0,823,641,560,1241:14,4,12,6 +chrX 1553084 . T C 835 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=12.91;BaseQRankSum=-2.526;DP=117;ExcessHet=0.0000;FS=4.927;MQ=60.00;MQRankSum=0;QD=12.91;ReadPosRankSum=0.583;SOR=1.371;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:47:48:0,47 0/1:34,33:67:99:.:865,0,969:16,18,11,22 +chrX 1553193 . C G 2827 . AC=2;AF=0.667;AN=3;AS_AltDP=93;AS_QD=24.01;BaseQRankSum=-0.928;DP=121;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=24.01;ReadPosRankSum=0.784;SOR=0.741;VarDP=119 GT:AD:DP:GQ:PL:SB 1:0,54:54:99:1781,0:0,0,26,28 0/1:26,39:65:99:1076,0,678:14,12,25,14 +chrX 1553205 . G A 2643 . AC=2;AF=0.667;AN=3;AS_AltDP=87;AS_QD=23.65;BaseQRankSum=-0.862;DP=118;ExcessHet=0.0000;FS=2.995;MQ=60.00;MQRankSum=0;QD=23.65;ReadPosRankSum=0.525;SOR=0.391;VarDP=113 GT:AD:DP:GQ:PL:SB 1:0,52:52:99:1732,0:0,0,25,27 0/1:26,35:61:99:941,0,666:16,10,20,15 +chrX 1553391 . C CTTTTT 729.97 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=19.23;BaseQRankSum=-0.937;DP=123;ExcessHet=0.0000;FS=6.928;MQ=59.92;MQRankSum=-0.854;QD=19.23;ReadPosRankSum=0.381;SOR=1.170;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:94:65:0,94 0/1:18,22:40:99:.:769,0,615:11,7,8,14 +chrX 1553544 . T C 774 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=17.11;BaseQRankSum=-0.209;DP=113;ExcessHet=0.0000;FS=8.257;MQ=54.49;MQRankSum=-5.109;QD=17.11;ReadPosRankSum=-1.42;SOR=0.692;VarDP=47 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:65:94:65:.:.:0,94 0|1:26,21:47:99:.:0|1:1553544_T_C:804,0,1028:1553544:9,17,12,9 +chrX 1553545 . C G 855 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=17.70;BaseQRankSum=-0.436;DP=116;ExcessHet=0.0000;FS=8.094;MQ=54.43;MQRankSum=-5.363;QD=17.70;ReadPosRankSum=-1.328;SOR=0.964;VarDP=50 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:65:94:65:.:.:0,94 0|1:27,23:50:99:.:0|1:1553544_T_C:885,0,1064:1553544:10,17,14,9 +chrX 1553548 . C T 896 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=18.16;BaseQRankSum=2.048;DP=116;ExcessHet=0.0000;FS=10.225;MQ=54.07;MQRankSum=-5.455;QD=18.16;ReadPosRankSum=-1.113;SOR=1.076;VarDP=51 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:65:94:65:.:.:0,94 0|1:27,24:51:99:.:0|1:1553544_T_C:926,0,1061:1553544:10,17,15,9 +chrX 1553552 . TA T 886.97 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=18.16;BaseQRankSum=0.152;DP=116;ExcessHet=0.0000;FS=7.823;MQ=53.71;MQRankSum=-5.684;QD=18.16;ReadPosRankSum=-1.004;SOR=0.803;VarDP=51 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:65:94:65:.:.:0,94 0|1:27,24:51:99:.:0|1:1553544_T_C:926,0,1061:1553544:10,17,14,10 +chrX 1553560 . TGTA T 809.97 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=18.06;BaseQRankSum=0.339;DP=114;ExcessHet=0.0000;FS=6.062;MQ=53.08;MQRankSum=-6.057;QD=18.06;ReadPosRankSum=-0.49;SOR=0.889;VarDP=47 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:65:94:65:.:.:0,94 0|1:25,22:47:99:.:0|1:1553544_T_C:849,0,983:1553544:10,15,13,9 +chrX 1553667 . G T 729 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=12.44;BaseQRankSum=2.332;DP=126;ExcessHet=0.0000;FS=2.175;MQ=57.72;MQRankSum=-3.09;QD=12.44;ReadPosRankSum=-1.412;SOR=1.101;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:94:65:0,94 0/1:33,28:61:99:.:759,0,829:16,17,11,17 +chrX 1553683 . T C 990 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=16.72;BaseQRankSum=-0.214;DP=126;ExcessHet=0.0000;FS=0.000;MQ=58.82;MQRankSum=-2.037;QD=16.72;ReadPosRankSum=-0.494;SOR=0.652;VarDP=61 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:65:94:65:.:.:0,94 0|1:34,27:61:99:.:0|1:1553683_T_C:1020,0,1335:1553683:16,18,13,14 +chrX 1553685 . C T 990 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=16.72;BaseQRankSum=1.338;DP=127;ExcessHet=0.0000;FS=0.000;MQ=58.84;MQRankSum=-2.037;QD=16.72;ReadPosRankSum=-0.472;SOR=0.652;VarDP=61 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:65:94:65:.:.:0,94 0|1:34,27:61:99:.:0|1:1553683_T_C:1020,0,1335:1553683:16,18,13,14 +chrX 1553718 . G C 796 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=13.54;BaseQRankSum=1.456;DP=128;ExcessHet=0.0000;FS=6.913;MQ=59.92;MQRankSum=1.049;QD=13.54;ReadPosRankSum=0.022;SOR=0.837;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:94:65:0,94 0/1:30,31:61:99:.:826,0,760:12,18,18,13 +chrX 1554082 . CA C 458.97 . AC=2;AF=0.667;AN=3;AS_AltDP=43;AS_QD=5.53;BaseQRankSum=1.425;DP=100;ExcessHet=0.0000;FS=2.844;MQ=59.90;MQRankSum=0.031;QD=5.53;ReadPosRankSum=0.714;SOR=1.047;VarDP=90 GT:AD:DP:GQ:PL:SB 1:23,23:46:7:7,0:16,7,14,9 0/1:24,20:44:99:491,0,611:11,13,14,6 +chrX 1554390 . C T 675 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=10.37;BaseQRankSum=1.879;DP=136;ExcessHet=0.0000;FS=6.575;MQ=60.00;MQRankSum=0;QD=10.37;ReadPosRankSum=0.999;SOR=0.883;VarDP=68 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,224 0/1:39,29:68:99:.:705,0,932:16,23,17,12 +chrX 1554444 . C T 656 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=13.45;BaseQRankSum=0.473;DP=119;ExcessHet=0.0000;FS=10.318;MQ=60.00;MQRankSum=0;QD=13.45;ReadPosRankSum=0.566;SOR=0.707;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,224 0/1:25,26:51:99:.:686,0,624:8,17,15,11 +chrX 1554644 . C G 486 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=11.22;BaseQRankSum=0.555;DP=114;ExcessHet=0.0000;FS=6.734;MQ=60.00;MQRankSum=0;QD=11.22;ReadPosRankSum=-0.61;SOR=1.765;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,224 0/1:26,20:46:99:.:516,0,692:10,16,4,16 +chrX 1554949 . G A 658 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=14.04;BaseQRankSum=-3.152;DP=119;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.04;ReadPosRankSum=-1.83;SOR=0.600;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,224 0/1:22,27:49:99:.:688,0,618:10,12,13,14 +chrX 1555541 . C T 3707 . AC=3;AF=1.00;AN=3;AS_AltDP=113;AS_QD=33.07;DP=117;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.07;SOR=0.784;VarDP=113 GT:AD:DP:GQ:PL:SB 1:0,60:60:99:1935,0:0,0,29,31 1/1:0,53:53:99:1802,159,0:0,0,25,28 +chrX 1555828 . C G 49 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=1.39;BaseQRankSum=1.434;DP=112;ExcessHet=0.0000;FS=1.023;MQ=60.00;MQRankSum=0;QD=1.39;ReadPosRankSum=-0.032;SOR=0.618;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 1:24,33:57:79:.:79,0:11,13,17,16 0/0:.:52:93:52:0,93,1340 +chrX 1555851 . G A 628 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=12.65;BaseQRankSum=1.039;DP=112;ExcessHet=0.0000;FS=3.933;MQ=59.88;MQRankSum=-1.042;QD=12.65;ReadPosRankSum=0.413;SOR=0.894;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,253 0/1:28,24:52:99:.:658,0,752:16,12,10,14 +chrX 1555899 . C T 59 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=1.35;BaseQRankSum=0.814;DP=131;ExcessHet=0.0000;FS=0.000;MQ=59.25;MQRankSum=0.062;QD=1.35;ReadPosRankSum=-0.491;SOR=0.687;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 1:32,34:66:89:.:89,0:17,15,18,16 0/0:.:65:99:65:0,120,1800 +chrX 1555901 . C T 59 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=1.35;BaseQRankSum=1.741;DP=131;ExcessHet=0.0000;FS=0.000;MQ=59.25;MQRankSum=0.062;QD=1.35;ReadPosRankSum=-0.244;SOR=0.687;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 1:32,34:66:89:.:89,0:17,15,18,16 0/0:.:65:99:65:0,120,1800 +chrX 1555923 . C T 1015 . AC=1;AF=0.333;AN=3;AS_AltDP=39;AS_QD=15.14;BaseQRankSum=-0.801;DP=140;ExcessHet=0.0000;FS=4.870;MQ=59.22;MQRankSum=0.284;QD=15.14;ReadPosRankSum=1.78;SOR=1.387;VarDP=69 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:69:99:69:0,154 0/1:30,39:69:99:.:1045,0,795:15,15,25,14 +chrX 1555931 . T A 6150 . AC=3;AF=1.00;AN=3;AS_AltDP=139;AS_QD=26.15;BaseQRankSum=2.964;DP=140;ExcessHet=0.0000;FS=3.468;MQ=59.25;MQRankSum=4.245;QD=44.14;ReadPosRankSum=1.68;SOR=0.578;VarDP=140 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,69:70:99:.:.:3030,0:.:0,1,37,32 1|1:0,70:70:99:0|1:1555931_T_A:3150,211,0:1555931:0,0,40,30 +chrX 1555940 . G A 5990 . AC=3;AF=1.00;AN=3;AS_AltDP=134;AS_QD=28.37;DP=134;ExcessHet=0.0000;FS=0.000;MQ=59.36;QD=44.93;SOR=0.851;VarDP=134 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,62:62:99:.:.:2780,0:.:0,0,31,31 1|1:0,72:72:99:0|1:1555931_T_A:3240,217,0:1555931:0,0,41,31 +chrX 1555945 . G A 6074 . AC=3;AF=1.00;AN=3;AS_AltDP=137;AS_QD=30.13;DP=137;ExcessHet=0.0000;FS=0.000;MQ=59.34;QD=44.55;SOR=0.898;VarDP=137 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,65:65:99:.:.:2874,0:.:0,0,33,32 1|1:0,72:72:99:0|1:1555931_T_A:3230,217,0:1555931:0,0,42,30 +chrX 1556234 . G GA 584.97 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=12.73;BaseQRankSum=0.822;DP=119;ExcessHet=0.0000;FS=8.135;MQ=60.00;MQRankSum=0;QD=12.73;ReadPosRankSum=1.357;SOR=0.862;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:30:62:0,30 0/1:22,27:49:99:.:624,0,483:8,14,16,11 +chrX 1556357 . T A 782 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=7.81;BaseQRankSum=0.848;DP=110;ExcessHet=0.0000;FS=0.000;MQ=59.96;MQRankSum=0;QD=7.81;ReadPosRankSum=0.705;SOR=0.633;VarDP=104 GT:AD:DP:GQ:PL:SB 1:21,23:44:60:60,0:9,12,9,14 0/1:32,28:60:99:752,0,832:12,20,12,16 +chrX 1556657 . T C 2546 . AC=2;AF=0.667;AN=3;AS_AltDP=82;AS_QD=23.21;BaseQRankSum=0.381;DP=122;ExcessHet=0.0000;FS=0.000;MQ=59.94;MQRankSum=0;QD=23.21;ReadPosRankSum=0.459;SOR=0.631;VarDP=111 GT:AD:DP:GQ:PL:SB 1:0,55:55:99:1840,0:0,0,29,26 0/1:29,27:56:99:736,0,797:14,15,12,15 +chrX 1556697 . C G 316 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=5.67;BaseQRankSum=2.758;DP=133;ExcessHet=0.0000;FS=2.199;MQ=59.62;MQRankSum=1.155;QD=5.67;ReadPosRankSum=0.886;SOR=1.148;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 1:27,34:61:99:.:346,0:14,13,21,13 0/0:.:69:99:69:0,106,1718 +chrX 1556701 . C G 375 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=6.86;BaseQRankSum=0.148;DP=131;ExcessHet=0.0000;FS=2.256;MQ=59.61;MQRankSum=1.2;QD=6.86;ReadPosRankSum=0.169;SOR=1.141;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 1:25,34:59:99:.:405,0:13,12,21,13 0/0:.:69:99:69:0,106,1718 +chrX 1556795 . G C 2522 . AC=2;AF=0.667;AN=3;AS_AltDP=84;AS_QD=23.20;BaseQRankSum=0.886;DP=117;ExcessHet=0.0000;FS=13.752;MQ=60.00;MQRankSum=0;QD=23.20;ReadPosRankSum=-0.347;SOR=0.599;VarDP=110 GT:AD:DP:GQ:PL:SB 1:0,56:56:99:1781,0:0,0,32,24 0/1:26,28:54:99:771,0,667:8,18,15,13 +chrX 1556835 . A ATT 512.97 . AC=2;AF=0.667;AN=3;AS_AltDP=40;AS_QD=7.08;BaseQRankSum=0.348;DP=108;ExcessHet=0.0000;FS=0.000;MQ=59.45;MQRankSum=0.901;QD=7.08;ReadPosRankSum=1.091;SOR=0.793;VarDP=78 GT:AD:DP:GQ:PL:SB 1:17,25:42:99:206,0:9,8,13,12 0/1:21,15:36:99:346,0,610:10,11,8,7 +chrX 1556980 . T C 2868 . AC=2;AF=0.667;AN=3;AS_AltDP=94;AS_QD=24.35;BaseQRankSum=-1.84;DP=130;ExcessHet=0.0000;FS=1.840;MQ=59.70;MQRankSum=0;QD=24.35;ReadPosRankSum=1.693;SOR=0.815;VarDP=119 GT:AD:DP:GQ:PL:SB 1:0,65:65:99:2147,0:0,0,28,37 0/1:25,29:54:99:751,0,687:13,12,15,14 +chrX 1557111 . T G 108 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=2.12;BaseQRankSum=0.425;DP=127;ExcessHet=0.0000;FS=0.000;MQ=59.10;MQRankSum=0.627;QD=2.12;ReadPosRankSum=0.408;SOR=0.625;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 1:30,35:65:99:.:138,0:14,16,17,18 0/0:.:61:99:61:0,113,1379 +chrX 1557386 . T C 2644 . AC=2;AF=0.667;AN=3;AS_AltDP=88;AS_QD=20.26;BaseQRankSum=0.023;DP=136;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=20.26;ReadPosRankSum=-1.116;SOR=0.703;VarDP=132 GT:AD:DP:GQ:PL:SB 1:0,68:68:99:2216,0:0,0,40,28 0/1:44,20:64:99:458,0,1265:27,17,14,6 +chrX 1557651 . TATCCATCC T,TATCC 1956.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=23,41;AS_QD=21.17,24.77;BaseQRankSum=0.686;DP=123;ExcessHet=0.0000;FS=0.894;MQ=59.86;MQRankSum=0;QD=22.43;ReadPosRankSum=-0.848;SOR=0.759;VarDP=89 GT:AD:DP:GQ:PL:SB 1:0,23,15:38:99:1016,0,361:0,0,16,22 0/2:25,0,26:51:99:980,1055,2083,0,1028,949:13,12,14,12 +chrX 1557724 . T TTATC 3375.97 . AC=2;AF=0.667;AN=3;AS_AltDP=81;AS_QD=32.22;BaseQRankSum=-2.028;DP=127;ExcessHet=0.0000;FS=4.356;MQ=59.96;MQRankSum=0;QD=32.22;ReadPosRankSum=-0.566;SOR=0.365;VarDP=106 GT:AD:DP:GQ:PL:SB 1:0,51:51:99:2273,0:0,0,28,23 0/1:25,30:55:99:1142,0,918:16,9,15,15 +chrX 1557763 . C CATCT 421.97 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=8.70;BaseQRankSum=-0.997;DP=127;ExcessHet=0.0000;FS=2.449;MQ=59.92;MQRankSum=1.273;QD=8.70;ReadPosRankSum=0.346;SOR=0.376;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 1:21,32:53:99:.:461,0:14,7,18,14 0/0:.:65:99:65:0,120,1800 +chrX 1557817 . TTATCTATCTATG T 955.97 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=15.79;BaseQRankSum=0.092;DP=136;ExcessHet=0.0000;FS=3.599;MQ=60.00;MQRankSum=0;QD=15.79;ReadPosRankSum=0.726;SOR=0.343;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:99:56:0,246 0/1:36,27:63:99:.:995,0,1408:24,12,15,12 +chrX 1557829 . GTATC G,* 1122.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=28,0;AS_QD=29.29,0.00;DP=136;ExcessHet=0.0000;FS=7.130;MQ=60.00;QD=37.48;SOR=0.255;VarDP=31 GT:AD:DP:GQ:PL:SB 1:3,28,0:31:99:1162,0,1201:0,0,13,15 0/2:36,0,27:63:99:995,1104,2594,0,1490,1408:24,12,15,12 +chrX 1557935 . GTATC G 1400.97 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=20.87;BaseQRankSum=1.796;DP=154;ExcessHet=0.0000;FS=6.381;MQ=60.00;MQRankSum=0;QD=20.87;ReadPosRankSum=1.047;SOR=0.772;VarDP=69 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:72:99:72:0,207 0/1:32,37:69:99:.:1440,0,1227:19,13,16,21 +chrX 1558159 . TCTAC T 1970.97 . AC=2;AF=0.667;AN=3;AS_AltDP=68;AS_QD=17.63;BaseQRankSum=-1.238;DP=135;ExcessHet=0.0000;FS=2.480;MQ=59.88;MQRankSum=0;QD=17.63;ReadPosRankSum=1.287;SOR=0.473;VarDP=114 GT:AD:DP:GQ:PL:SB 1:18,33:51:99:665,0:8,10,17,16 0/1:28,35:63:99:1345,0,1014:10,18,14,21 +chrX 1558213 . AATCT A,AATCTATCTATCT 3189.97 . AC=0,3;AF=0.00,1.00;AN=3;AS_AltDP=14,74;AS_QD=29.14,26.77;DP=115;ExcessHet=0.0000;FS=0.000;MQ=59.73;QD=36.69;SOR=0.786;VarDP=88 GT:AD:DP:GQ:PL:SB 2:0,14,27:41:99:1205,797,0:0,0,22,19 2/2:0,0,47:47:99:2024,2024,2025,140,141,0:0,0,20,27 +chrX 1558613 . GTATC G 1085.97 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=10.23;BaseQRankSum=-0.435;DP=121;ExcessHet=0.0000;FS=4.790;MQ=59.68;MQRankSum=0;QD=10.23;ReadPosRankSum=1.634;SOR=0.378;VarDP=110 GT:AD:DP:GQ:PL:SB 1:25,32:57:99:275,0:13,12,15,17 0/1:29,24:53:99:850,0,1090:5,24,9,15 +chrX 1558654 . A AATCTATCTATCTATCTATCT,AATCTATCT 4434.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=79,19;AS_QD=33.72,30.60;DP=128;ExcessHet=0.0000;FS=0.000;MQ=59.56;QD=45.65;SOR=1.237;VarDP=98 GT:AD:DP:GQ:PL:SB 1:0,60,0:60:99:2643,0,2646:0,0,30,30 1/2:0,19,19:38:99:1831,816,742,806,0,729:0,0,8,30 +chrX 1558706 . CATCTATCTATCT C,CATCT 918.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=11,12;AS_QD=25.42,32.27;DP=113;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=41.65;SOR=0.776;VarDP=23 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:94:68:0,94,94 1/2:0,11,12:23:99:.:958,502,542,458,0,420:0,0,12,11 +chrX 1559161 . C T 489 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=11.80;BaseQRankSum=2.418;DP=113;ExcessHet=0.0000;FS=2.649;MQ=60.00;MQRankSum=0;QD=11.80;ReadPosRankSum=1.434;SOR=0.883;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:94:68:0,94 0/1:25,19:44:99:.:519,0,617:11,14,11,8 +chrX 1559453 . C CA 875.97 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=18.30;BaseQRankSum=-1.5;DP=120;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=18.30;ReadPosRankSum=1.597;SOR=0.660;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:94:68:0,94 0/1:23,27:50:99:.:915,0,779:13,10,15,12 +chrX 1559688 . G A 652 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=11.37;BaseQRankSum=-1.827;DP=129;ExcessHet=0.0000;FS=0.996;MQ=59.98;MQRankSum=-1.072;QD=11.37;ReadPosRankSum=0.498;SOR=0.498;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:94:68:0,94 0/1:33,27:60:99:.:682,0,937:19,14,14,13 +chrX 1559746 . A G 2510 . AC=2;AF=0.667;AN=3;AS_AltDP=87;AS_QD=21.17;BaseQRankSum=2.174;DP=125;ExcessHet=0.0000;FS=1.658;MQ=59.65;MQRankSum=-0.091;QD=21.17;ReadPosRankSum=-0.495;SOR=0.497;VarDP=120 GT:AD:DP:GQ:PL:SB 1:1,62:63:99:1962,0:1,0,29,33 0/1:32,25:57:99:578,0,892:13,19,13,12 +chrX 1559783 . T C 4316 . AC=3;AF=1.00;AN=3;AS_AltDP=137;AS_QD=31.72;DP=144;ExcessHet=0.0000;FS=0.000;MQ=59.70;QD=31.72;SOR=0.737;VarDP=137 GT:AD:DP:GQ:PL:SB 1:0,69:69:99:2179,0:0,0,35,34 1/1:0,68:68:99:2167,204,0:0,0,35,33 +chrX 1559820 . T C 2397 . AC=1;AF=0.333;AN=3;AS_AltDP=73;AS_QD=33.25;DP=146;ExcessHet=0.0000;FS=0.000;MQ=59.96;QD=33.25;SOR=0.720;VarDP=73 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,73:73:99:.:2427,0:0,0,37,36 0/0:.:69:99:69:0,120,1800 +chrX 1560253 . A T 2078 . AC=1;AF=0.333;AN=3;AS_AltDP=66;AS_QD=31.94;DP=102;ExcessHet=0.0000;FS=0.000;MQ=59.61;QD=31.94;SOR=1.112;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,66:66:99:.:2108,0:0,0,27,39 0/0:.:35:36:35:0,36,972 +chrX 1560317 . A G 1453 . AC=1;AF=0.333;AN=3;AS_AltDP=45;AS_QD=32.96;DP=83;ExcessHet=0.0000;FS=0.000;MQ=58.46;QD=32.96;SOR=1.038;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,45:45:99:.:1483,0:0,0,19,26 0/0:.:35:36:35:0,36,972 +chrX 1560630 . C CA 160.97 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=9.52;BaseQRankSum=0;DP=86;ExcessHet=0.0000;FS=9.103;MQ=58.99;MQRankSum=-0.527;QD=9.52;ReadPosRankSum=-0.507;SOR=0.041;VarDP=21 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:42:99:42:0,635 0/1:6,15:21:47:.:200,0,47:6,0,9,6 +chrX 1560955 . A G 581 . AC=2;AF=0.667;AN=3;AS_AltDP=45;AS_QD=6.79;BaseQRankSum=-0.076;DP=94;ExcessHet=0.0000;FS=19.718;MQ=60.00;MQRankSum=0;QD=6.79;ReadPosRankSum=0.863;SOR=0.872;VarDP=90 GT:AD:DP:GQ:PL:SB 1:23,26:49:94:94,0:18,5,8,18 0/1:22,19:41:99:517,0,607:13,9,10,9 +chrX 1561104 . C T 304 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=9.82;BaseQRankSum=0.831;DP=95;ExcessHet=0.0000;FS=3.128;MQ=60.00;MQRankSum=0;QD=9.82;ReadPosRankSum=0.14;SOR=0.283;VarDP=34 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:58:99:58:0,185 0/1:20,14:34:99:.:334,0,492:7,13,7,7 +chrX 1561202 . T TCTCC 177.97 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=6.03;BaseQRankSum=-2.618;DP=89;ExcessHet=0.0000;FS=10.184;MQ=60.00;MQRankSum=0;QD=6.03;ReadPosRankSum=0.177;SOR=0.623;VarDP=36 GT:AD:DP:GQ:MIN_DP:PL:SB 1:15,21:36:99:.:217,0:4,11,12,9 0/0:.:46:48:46:0,48,720 +chrX 1561264 . TC T 640.97 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=20.61;BaseQRankSum=1.279;DP=75;ExcessHet=0.0000;FS=5.485;MQ=60.00;MQRankSum=0;QD=20.61;ReadPosRankSum=0.868;SOR=0.193;VarDP=33 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:39:99:39:.:.:0,139 0|1:15,18:33:99:.:0|1:1561264_TC_T:680,0,563:1561264:3,12,7,11 +chrX 1561268 . TCTC T 640.97 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=20.61;BaseQRankSum=0.251;DP=75;ExcessHet=0.0000;FS=5.485;MQ=60.00;MQRankSum=0;QD=20.61;ReadPosRankSum=0.418;SOR=0.193;VarDP=33 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:39:99:39:.:.:0,139 0|1:15,18:33:99:.:0|1:1561264_TC_T:680,0,563:1561264:3,12,7,11 +chrX 1561289 . TTC T 625.97 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=21.45;BaseQRankSum=0.068;DP=75;ExcessHet=0.0000;FS=5.599;MQ=60.00;MQRankSum=0;QD=21.45;ReadPosRankSum=-1.057;SOR=0.180;VarDP=31 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:39:99:39:.:.:0,139 0|1:13,18:31:99:.:0|1:1561264_TC_T:665,0,463:1561264:3,10,8,10 +chrX 1561418 . C CTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT 729.97 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=19.23;BaseQRankSum=0.665;DP=90;ExcessHet=0.0000;FS=0.000;MQ=59.22;MQRankSum=-1.747;QD=19.23;ReadPosRankSum=-0.543;SOR=0.527;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:39:99:39:0,139 0/1:20,20:40:99:.:769,0,735:9,11,10,10 +chrX 1561542 . C T 465 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=11.00;BaseQRankSum=-1.281;DP=120;ExcessHet=0.0000;FS=2.683;MQ=60.00;MQRankSum=0;QD=11.00;ReadPosRankSum=0.287;SOR=0.317;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:70:99:70:0,1755 0/1:26,19:45:99:.:495,0,744:17,9,10,9 +chrX 1561657 . G A 711 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=12.56;BaseQRankSum=0.363;DP=131;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=12.56;ReadPosRankSum=-0.546;SOR=0.770;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:70:99:70:0,1755 0/1:30,29:59:99:.:741,0,736:17,13,17,12 +chrX 1561688 . T C 1128 . AC=2;AF=0.667;AN=3;AS_AltDP=70;AS_QD=8.77;BaseQRankSum=2.183;DP=134;ExcessHet=0.0000;FS=1.383;MQ=59.96;MQRankSum=1.173;QD=8.77;ReadPosRankSum=0.486;SOR=0.874;VarDP=132 GT:AD:DP:GQ:PL:SB 1:32,42:74:99:428,0:15,17,20,22 0/1:30,28:58:99:730,0,764:16,14,18,10 +chrX 1561717 . G A 98 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=1.83;BaseQRankSum=-0.477;DP=131;ExcessHet=0.0000;FS=4.681;MQ=59.93;MQRankSum=0;QD=1.83;ReadPosRankSum=1.345;SOR=0.324;VarDP=70 GT:AD:DP:GQ:MIN_DP:PL:SB 1:32,38:70:99:.:128,0:12,20,19,19 0/0:.:58:99:58:0,120,1800 +chrX 1561747 . T TA 433.97 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=9.65;BaseQRankSum=-1.234;DP=137;ExcessHet=0.0000;FS=2.425;MQ=60.00;MQRankSum=0;QD=9.65;ReadPosRankSum=1.621;SOR=0.832;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:75:99:75:0,188 0/1:24,25:49:99:.:473,0,474:13,11,11,14 +chrX 1561978 . G A 809 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=13.32;BaseQRankSum=1.582;DP=140;ExcessHet=0.0000;FS=0.972;MQ=60.00;MQRankSum=0;QD=13.32;ReadPosRankSum=-0.454;SOR=0.906;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:75:99:75:0,188 0/1:32,31:63:99:.:839,0,764:14,18,12,19 +chrX 1562124 . G T 2525 . AC=2;AF=0.667;AN=3;AS_AltDP=78;AS_QD=32.76;DP=154;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.76;SOR=1.108;VarDP=78 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:75:99:75:0,188 1/1:0,78:78:99:.:2555,234,0:0,0,46,32 +chrX 1562169 . T C 747 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=9.71;BaseQRankSum=-0.44;DP=159;ExcessHet=0.0000;FS=0.853;MQ=60.00;MQRankSum=0;QD=9.71;ReadPosRankSum=-1.297;SOR=0.577;VarDP=80 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:75:99:75:0,188 0/1:48,32:80:99:.:777,0,1314:27,21,17,15 +chrX 1562198 . A G 3783 . AC=3;AF=1.00;AN=3;AS_AltDP=127;AS_QD=23.25;BaseQRankSum=-0.925;DP=171;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=23.25;ReadPosRankSum=-0.806;SOR=0.688;VarDP=164 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:37,44:81:99:.:.:194,0:.:18,19,16,28 1|1:0,83:83:99:0|1:1562198_A_G:3619,250,0:1562198:0,0,46,37 +chrX 1562209 . T C 3734 . AC=3;AF=1.00;AN=3;AS_AltDP=124;AS_QD=23.38;BaseQRankSum=0.574;DP=166;ExcessHet=0.0000;FS=0.693;MQ=60.00;MQRankSum=0;QD=23.38;ReadPosRankSum=-0.133;SOR=0.607;VarDP=161 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:37,44:81:99:.:.:239,0:.:17,20,17,27 1|1:0,80:80:99:0|1:1562198_A_G:3525,241,0:1562198:0,0,43,37 +chrX 1562270 . C T 3025 . AC=3;AF=1.00;AN=3;AS_AltDP=121;AS_QD=19.97;BaseQRankSum=1.031;DP=158;ExcessHet=0.0000;FS=0.744;MQ=59.97;MQRankSum=-0.808;QD=19.97;ReadPosRankSum=0.239;SOR=0.578;VarDP=153 GT:AD:DP:GQ:PL:SB 1:32,46:78:99:498,0:14,18,19,27 1/1:0,75:75:99:2557,226,0:0,0,38,37 +chrX 1562281 . TA T 378.97 . AC=1;AF=0.333;AN=3;AS_AltDP=45;AS_QD=5.43;BaseQRankSum=-2.278;DP=153;ExcessHet=0.0000;FS=0.000;MQ=59.94;MQRankSum=-0.817;QD=5.43;ReadPosRankSum=-0.032;SOR=0.794;VarDP=77 GT:AD:DP:GQ:MIN_DP:PL:SB 1:32,45:77:99:.:418,0:15,17,20,25 0/0:.:74:99:74:0,113,1800 +chrX 1562447 . T C 1126 . AC=1;AF=0.333;AN=3;AS_AltDP=45;AS_QD=14.63;BaseQRankSum=-2.244;DP=150;ExcessHet=0.0000;FS=0.000;MQ=54.19;MQRankSum=0.951;QD=14.63;ReadPosRankSum=-0.243;SOR=0.631;VarDP=79 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:69:99:69:0,501 0/1:34,45:79:99:.:1156,0,894:13,21,18,27 +chrX 1562460 . A G 808 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=11.03;BaseQRankSum=-0.183;DP=148;ExcessHet=0.0000;FS=0.000;MQ=54.03;MQRankSum=-1.296;QD=11.03;ReadPosRankSum=0.568;SOR=0.682;VarDP=76 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:69:99:69:0,501 0/1:41,35:76:99:.:838,0,1057:14,27,12,23 +chrX 1562759 . C G 962 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=16.81;BaseQRankSum=-0.584;DP=130;ExcessHet=0.0000;FS=1.007;MQ=60.00;MQRankSum=0;QD=16.81;ReadPosRankSum=-0.657;SOR=0.950;VarDP=59 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:69:99:69:.:.:0,501 0|1:33,26:59:99:.:0|1:1562759_C_G:992,0,1257:1562759:17,16,15,11 +chrX 1562761 . C T 962 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=16.81;BaseQRankSum=-0.877;DP=130;ExcessHet=0.0000;FS=1.007;MQ=60.00;MQRankSum=0;QD=16.81;ReadPosRankSum=-0.673;SOR=0.950;VarDP=59 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:69:99:69:.:.:0,501 0|1:33,26:59:99:.:0|1:1562759_C_G:992,0,1257:1562759:17,16,15,11 +chrX 1562847 . T C 972 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=18.56;BaseQRankSum=1.06;DP=125;ExcessHet=0.0000;FS=1.047;MQ=60.00;MQRankSum=0;QD=18.56;ReadPosRankSum=-0.123;SOR=0.870;VarDP=54 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:69:99:69:.:.:0,501 0|1:27,27:54:99:.:0|1:1562847_T_C:1002,0,1020:1562847:13,14,15,12 +chrX 1562855 . C T 964 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=18.75;BaseQRankSum=1.095;DP=124;ExcessHet=0.0000;FS=1.047;MQ=60.00;MQRankSum=0;QD=18.75;ReadPosRankSum=-0.819;SOR=0.922;VarDP=53 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:69:99:69:.:.:0,501 0|1:26,27:53:99:.:0|1:1562847_T_C:994,0,979:1562847:13,13,15,12 +chrX 1562927 . G A 764 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=14.98;BaseQRankSum=2.21;DP=122;ExcessHet=0.0000;FS=9.901;MQ=59.83;MQRankSum=-0.872;QD=14.98;ReadPosRankSum=0.983;SOR=1.346;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:69:99:69:0,501 0/1:24,29:53:99:.:794,0,560:10,14,19,10 +chrX 1563005 . A AG 817.97 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=17.49;BaseQRankSum=-1.723;DP=122;ExcessHet=0.0000;FS=1.100;MQ=60.00;MQRankSum=0;QD=17.49;ReadPosRankSum=1.763;SOR=0.481;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:69:99:69:0,501 0/1:23,26:49:99:.:857,0,612:10,13,13,13 +chrX 1563076 . A G 668 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=14.54;BaseQRankSum=1.262;DP=119;ExcessHet=0.0000;FS=6.534;MQ=60.00;MQRankSum=0;QD=14.54;ReadPosRankSum=-2.135;SOR=0.181;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:69:99:69:0,501 0/1:25,23:48:99:.:698,0,882:19,6,13,10 +chrX 1563077 . AAAAG AAAAGAAAGAAAG,AAAGAAAGAAAG,AAAAGAAAGAAAGAAAG,AAAGAAAGAAAGAAAG,A 2423.97 . AC=2,0,0,0,1;AF=0.667,0.00,0.00,0.00,0.333;AN=3;AS_AltDP=36,0,0,11,23;AS_QD=30.74,34.72,30.50,29.86,32.46;BaseQRankSum=2.495;DP=101;ExcessHet=0.0000;FS=5.290;MQ=59.26;MQRankSum=-0.226;QD=34.69;ReadPosRankSum=1.618;SOR=1.816;VarDP=71 GT:AD:DP:GQ:PL:SB 1:1,17,0,0,11,0:29:99:928,0,512,614,191,868:0,1,22,6 1/5:0,19,0,0,0,23:42:99:1535,758,699,1546,775,1630,1546,775,1630,1630,1546,775,1630,1630,1630,756,0,865,865,865,881:0,0,28,14 +chrX 1563187 . G GGA 1271.97 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=24.74;BaseQRankSum=0.113;DP=123;ExcessHet=0.0000;FS=2.541;MQ=59.63;MQRankSum=0;QD=24.74;ReadPosRankSum=-0.752;SOR=0.337;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,1089 0/1:18,35:53:99:.:1311,0,615:12,6,19,16 +chrX 1563499 . CA C 691.97 . AC=2;AF=0.667;AN=3;AS_AltDP=32;AS_QD=21.50;DP=120;ExcessHet=0.0000;FS=7.899;MQ=59.41;MQRankSum=-0.269;QD=21.50;SOR=1.001;VarDP=34 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,1089 1/1:2,32:34:56:.:731,56,0:0,2,20,12 +chrX 1563503 . AAAAAAAAAAAAAG A 66.97 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=1.83;BaseQRankSum=1.777;DP=130;ExcessHet=0.0000;FS=0.000;MQ=59.30;MQRankSum=1.207;QD=1.83;ReadPosRankSum=-1.986;SOR=0.633;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 1:27,31:58:99:.:106,0:10,17,12,19 0/0:.:60:79:60:0,79,1737 +chrX 1563616 . T C 1995 . AC=3;AF=1.00;AN=3;AS_AltDP=94;AS_QD=16.20;BaseQRankSum=-0.13;DP=129;ExcessHet=0.0000;FS=2.731;MQ=60.00;MQRankSum=0;QD=16.20;ReadPosRankSum=0.943;SOR=0.462;VarDP=125 GT:AD:DP:GQ:PL:SB 1:31,36:67:99:179,0:20,11,24,12 1/1:0,58:58:99:1846,174,0:0,0,30,28 +chrX 1564015 . CTT CTTT,C,CT 1777.97 . AC=1,1,1;AF=0.333,0.333,0.333;AN=3;AS_AltDP=47,18,18;AS_QD=19.06,28.21,31.16;BaseQRankSum=-0.635;DP=118;ExcessHet=0.0000;FS=3.115;MQ=59.86;MQRankSum=0;QD=21.63;ReadPosRankSum=-1.13;SOR=0.338;VarDP=84 GT:AD:DP:GQ:PL:SB 1:1,45,0,0:46:99:915,0,938,938:1,0,21,24 2/3:0,2,18,18:38:99:902,946,1178,366,371,429,395,358,0,310:0,0,19,19 +chrX 1564529 . A C 6005 . AC=3;AF=1.00;AN=3;AS_AltDP=136;AS_QD=26.67;DP=136;ExcessHet=0.0000;FS=0.000;MQ=59.90;QD=44.38;SOR=0.816;VarDP=136 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,72:72:99:.:.:3188,0:.:0,0,30,42 1|1:0,64:64:99:0|1:1564529_A_C:2847,193,0:1564529:0,0,34,30 +chrX 1564534 . C A 5970 . AC=3;AF=1.00;AN=3;AS_AltDP=135;AS_QD=28.22;DP=135;ExcessHet=0.0000;FS=0.000;MQ=59.94;QD=44.44;SOR=0.801;VarDP=135 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,71:71:99:.:.:3154,0:.:0,0,30,41 1|1:0,64:64:99:0|1:1564529_A_C:2846,193,0:1564529:0,0,34,30 +chrX 1564696 . G T 3036 . AC=2;AF=0.667;AN=3;AS_AltDP=100;AS_QD=25.34;BaseQRankSum=2.705;DP=128;ExcessHet=0.0000;FS=0.889;MQ=60.00;MQRankSum=0;QD=25.34;ReadPosRankSum=1.195;SOR=0.593;VarDP=121 GT:AD:DP:GQ:PL:SB 1:1,57:58:99:1861,0:1,0,30,27 0/1:20,43:63:99:1205,0,486:8,12,16,27 +chrX 1564718 . G C 3824 . AC=3;AF=1.00;AN=3;AS_AltDP=121;AS_QD=31.85;DP=123;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.85;SOR=0.968;VarDP=121 GT:AD:DP:GQ:PL:SB 1:0,56:56:99:1786,0:0,0,27,29 1/1:0,65:65:99:2068,194,0:0,0,26,39 +chrX 1565178 . T C 3402 . AC=2;AF=0.667;AN=3;AS_AltDP=116;AS_QD=23.19;BaseQRankSum=-2.72;DP=156;ExcessHet=0.0000;FS=3.726;MQ=60.00;MQRankSum=0;QD=23.19;ReadPosRankSum=-1.384;SOR=1.093;VarDP=148 GT:AD:DP:GQ:PL:SB 1:0,69:69:99:2216,0:0,0,45,24 0/1:32,47:79:99:1216,0,855:16,16,23,24 +chrX 1565414 . T G 390 . AC=1;AF=0.333;AN=3;AS_AltDP=43;AS_QD=5.92;BaseQRankSum=-2.724;DP=144;ExcessHet=0.0000;FS=18.073;MQ=60.00;MQRankSum=0;QD=5.92;ReadPosRankSum=-0.883;SOR=1.086;VarDP=71 GT:AD:DP:GQ:MIN_DP:PL:SB 1:28,43:71:99:.:420,0:19,9,16,27 0/0:.:73:99:73:0,120,1800 +chrX 1565481 . T C 3343 . AC=2;AF=0.667;AN=3;AS_AltDP=117;AS_QD=23.26;BaseQRankSum=-1.567;DP=149;ExcessHet=0.0000;FS=1.712;MQ=59.91;MQRankSum=0;QD=23.26;ReadPosRankSum=-1.129;SOR=0.709;VarDP=145 GT:AD:DP:GQ:PL:SB 1:0,79:79:99:2484,0:0,0,36,43 0/1:28,38:66:99:889,0,692:15,13,19,19 +chrX 1565595 . TG T 794.97 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=16.35;BaseQRankSum=0.623;DP=135;ExcessHet=0.0000;FS=2.418;MQ=60.00;MQRankSum=0;QD=16.35;ReadPosRankSum=0.434;SOR=0.370;VarDP=51 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:83:99:83:.:.:0,1800 0|1:24,27:51:99:.:0|1:1565595_TG_T:834,0,888:1565595:15,9,14,13 +chrX 1565603 . GT G 2174.97 . AC=2;AF=0.667;AN=3;AS_AltDP=87;AS_QD=18.76;BaseQRankSum=2.513;DP=132;ExcessHet=0.0000;FS=0.000;MQ=59.77;MQRankSum=3.29;QD=18.76;ReadPosRankSum=0.811;SOR=0.656;VarDP=118 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:2,65:67:99:.:.:1755,0:.:1,1,32,33 0|1:29,22:51:99:1|0:1565595_TG_T:459,0,1058:1565595:15,14,12,10 +chrX 1565923 . G GTTTTTTTTTCCCCCAAAAGGGGACCTAGGCGTGGTGGTACAAAACAC 3318.97 . AC=1;AF=0.333;AN=3;AS_AltDP=76;AS_QD=30.10;DP=166;ExcessHet=0.0000;FS=0.000;MQ=59.40;QD=44.18;SOR=0.746;VarDP=76 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,76:76:99:.:3358,0:0,0,39,37 0/0:.:85:0:85:0,0,1830 +chrX 1565924 . T TTTTTTTTTTCCCCCAAAAGGGGACCTAGGCGTGGTGGTACAAAACAC 1302.97 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=17.43;BaseQRankSum=0.882;DP=132;ExcessHet=0.0000;FS=4.437;MQ=60.00;MQRankSum=0;QD=17.43;ReadPosRankSum=-0.625;SOR=1.094;VarDP=77 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:52:99:52:.:.:0,1404 0|1:42,35:77:99:.:0|1:1565924_T_TTTTTTTTTTCCCCCAAAAGGGGACCTAGGCGTGGTGGTACAAAACAC:1342,0,1630:1565924:20,22,21,14 +chrX 1565925 . T C 1132 . AC=1;AF=0.333;AN=3;AS_AltDP=42;AS_QD=14.90;BaseQRankSum=-0.696;DP=133;ExcessHet=0.0000;FS=4.295;MQ=60.00;MQRankSum=0;QD=14.90;ReadPosRankSum=-0.247;SOR=0.547;VarDP=78 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:52:99:52:.:.:0,1404 0|1:36,42:78:99:.:1|0:1565924_T_TTTTTTTTTTCCCCCAAAAGGGGACCTAGGCGTGGTGGTACAAAACAC:1162,0,1374:1565924:21,15,20,22 +chrX 1566007 . C T 1994 . AC=1;AF=0.333;AN=3;AS_AltDP=61;AS_QD=33.18;DP=132;ExcessHet=0.0000;FS=0.000;MQ=59.47;QD=33.18;SOR=0.865;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,61:61:99:.:2024,0:0,0,33,28 0/0:.:71:0:71:0,0,1670 +chrX 1566094 . GAA G,GA 2283.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=52,21;AS_QD=26.68,10.73;BaseQRankSum=-0.827;DP=111;ExcessHet=0.0000;FS=8.957;MQ=60.00;MQRankSum=0;QD=25.25;ReadPosRankSum=0.206;SOR=0.781;VarDP=92 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:1894,0,1894:0,0,25,27 0/2:19,0,21:40:99:429,486,921,0,436,373:12,7,6,15 +chrX 1566333 . A T 2115 . AC=1;AF=0.333;AN=3;AS_AltDP=65;AS_QD=33.00;DP=129;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.00;SOR=1.000;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,65:65:99:.:2145,0:0,0,37,28 0/0:.:64:90:64:0,90,1593 +chrX 1566627 . A G 4803 . AC=3;AF=1.00;AN=3;AS_AltDP=147;AS_QD=32.88;DP=150;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.88;SOR=1.052;VarDP=147 GT:AD:DP:GQ:PL:SB 1:0,77:77:99:2606,0:0,0,42,35 1/1:0,70:70:99:2227,209,0:0,0,43,27 +chrX 1566746 . G C 3442 . AC=2;AF=0.667;AN=3;AS_AltDP=112;AS_QD=25.53;BaseQRankSum=1.185;DP=141;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=25.53;ReadPosRankSum=-0.275;SOR=0.680;VarDP=136 GT:AD:DP:GQ:PL:SB 1:0,79:79:99:2565,0:0,0,41,38 0/1:24,33:57:99:907,0,588:13,11,19,14 +chrX 1566808 . C T 3274 . AC=2;AF=0.667;AN=3;AS_AltDP=102;AS_QD=26.22;BaseQRankSum=2.651;DP=129;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=26.22;ReadPosRankSum=2.128;SOR=0.693;VarDP=126 GT:AD:DP:GQ:PL:SB 1:0,81:81:99:2718,0:0,0,44,37 0/1:24,21:45:99:586,0,563:13,11,11,10 +chrX 1566840 . GTGAGATGAATTTATGTTGCAAATATAACATATATGGTAGATATTATACACGATATGATATATTTATATA G 319.97 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=6.90;BaseQRankSum=-0.382;DP=163;ExcessHet=0.0000;FS=1.236;MQ=59.83;MQRankSum=-1.688;QD=6.90;ReadPosRankSum=0.478;SOR=0.719;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:87:99:87:0,1800 0/1:39,13:52:99:.:359,0,1560:21,18,6,7 +chrX 1567045 . TATATA T 1269.97 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=18.70;BaseQRankSum=-0.336;DP=162;ExcessHet=0.0000;FS=6.257;MQ=60.00;MQRankSum=0;QD=18.70;ReadPosRankSum=0.115;SOR=1.418;VarDP=70 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:87:99:87:.:.:0,1800 0|1:36,34:70:99:.:0|1:1567045_TATATA_T:1309,0,1409:1567045:18,18,12,22 +chrX 1567068 . A G 2410 . AC=1;AF=0.333;AN=3;AS_AltDP=79;AS_QD=30.50;BaseQRankSum=-0.505;DP=145;ExcessHet=0.0000;FS=4.117;MQ=60.00;MQRankSum=0;QD=30.50;ReadPosRankSum=-0.412;SOR=1.048;VarDP=80 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,79:80:99:.:2440,0:1,0,30,49 0/0:.:64:99:64:0,120,1800 +chrX 1567098 . G T 808 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=14.70;BaseQRankSum=0.335;DP=137;ExcessHet=0.0000;FS=1.010;MQ=60.00;MQRankSum=0;QD=14.70;ReadPosRankSum=1.278;SOR=0.536;VarDP=57 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:79:99:79:.:.:0,1800 0|1:33,24:57:99:.:0|1:1567045_TATATA_T:838,0,1144:1567045:18,15,12,12 +chrX 1567146 . T C 2859 . AC=1;AF=0.333;AN=3;AS_AltDP=69;AS_QD=28.61;BaseQRankSum=1.612;DP=134;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=40.69;ReadPosRankSum=-0.358;SOR=0.980;VarDP=71 GT:AD:DP:GQ:MIN_DP:PL:SB 1:2,69:71:99:.:2889,0:1,1,30,39 0/0:.:62:99:62:0,120,1800 +chrX 1567156 . A C 3902 . AC=2;AF=0.667;AN=3;AS_AltDP=99;AS_QD=28.70;BaseQRankSum=0.149;DP=137;ExcessHet=0.0000;FS=3.502;MQ=60.00;MQRankSum=0;QD=28.70;ReadPosRankSum=-0.074;SOR=0.862;VarDP=137 GT:AD:DP:GQ:PL:SB 1:1,68:69:99:2894,0:0,1,29,39 0/1:37,31:68:99:1038,0,1262:20,17,15,16 +chrX 1567194 . GTATATA G,GTA 4984.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=85,33;AS_QD=27.26,30.42;DP=137;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=42.58;SOR=0.874;VarDP=118 GT:AD:DP:GQ:PL:SB 1:0,55,0:55:99:2450,0,2450:0,0,25,30 1/2:0,30,33:63:99:2574,1315,1361,1166,0,1047:0,0,29,34 +chrX 1567382 . GATATA G 4066.97 . AC=2;AF=0.667;AN=3;AS_AltDP=97;AS_QD=32.33;BaseQRankSum=-0.584;DP=138;ExcessHet=0.0000;FS=6.940;MQ=60.00;MQRankSum=0;QD=32.33;ReadPosRankSum=1.268;SOR=1.402;VarDP=127 GT:AD:DP:GQ:PL:SB 1:0,65:65:99:2873,0:0,0,26,39 0/1:30,32:62:99:1233,0,1119:15,15,9,23 +chrX 1567744 . TTATATATATATA T 653.97 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=31.50;BaseQRankSum=2.355;DP=85;ExcessHet=0.0000;FS=0.000;MQ=59.11;MQRankSum=1.952;QD=31.50;ReadPosRankSum=1.93;SOR=0.724;VarDP=22 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:59:21:49:.:.:0,21 0|1:5,17:22:99:.:0|1:1567744_TTATATATATATA_T:693,0,147:1567744:3,2,10,7 +chrX 1567779 . T G,TATA 941 . AC=2,0;AF=0.667,0.00;AN=3;AS_AltDP=48,2;AS_QD=12.95,2.00;BaseQRankSum=1.436;DP=79;ExcessHet=0.0000;FS=1.928;MQ=59.81;MQRankSum=0;QD=12.61;ReadPosRankSum=2.07;SOR=0.803;VarDP=77 GT:AD:DP:GQ:PL:SB 1:23,26,0:49:99:127,0,1099:12,11,12,14 0/1:4,22,2:28:52:844,0,60,786,52,995:2,2,11,13 +chrX 1568282 . C CA 762.97 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=7.94;BaseQRankSum=1.371;DP=116;ExcessHet=0.0000;FS=6.352;MQ=59.69;MQRankSum=0.169;QD=7.94;ReadPosRankSum=0.076;SOR=0.592;VarDP=101 GT:AD:DP:GQ:PL:SB 1:23,28:51:99:152,0:9,14,15,13 0/1:24,26:50:99:650,0,596:10,14,14,12 +chrX 1568442 . TAA T 120.97 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=4.10;BaseQRankSum=-2.035;DP=103;ExcessHet=0.0000;FS=1.360;MQ=59.23;MQRankSum=-2.246;QD=4.10;ReadPosRankSum=0.906;SOR=0.755;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:53:99:53:0,984 0/1:28,11:39:99:.:160,0,1129:15,13,5,6 +chrX 1568448 . A G 198 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=4.85;BaseQRankSum=-2.208;DP=91;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=4.85;ReadPosRankSum=-2.411;SOR=0.674;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 1:20,27:47:99:.:228,0:8,12,11,16 0/0:.:44:99:44:0,100,1414 +chrX 1568450 . AAAAAAAAAAAATATATATATATATATATATATAT AATATATATATATATATATAT,A 1277.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=29,28;AS_QD=2.83,16.22;BaseQRankSum=0.957;DP=101;ExcessHet=0.0000;FS=1.652;MQ=59.29;MQRankSum=2.534;QD=13.44;ReadPosRankSum=0.374;SOR=0.513;VarDP=98 GT:AD:DP:GQ:PL:SB 1:22,29,0:51:99:198,0,1188:9,13,12,17 0/2:19,0,28:47:99:1119,1176,1956,0,779,695:9,10,16,12 +chrX 1568522 . A ATGTATATATGTATATGTG 451.97 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=12.59;BaseQRankSum=-0.203;DP=93;ExcessHet=0.0000;FS=2.984;MQ=60.00;MQRankSum=0;QD=12.59;ReadPosRankSum=0.557;SOR=1.358;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 1:14,25:39:99:.:491,0:7,7,9,16 0/0:.:40:75:40:0,75,1125 +chrX 1568550 . GTA G 944.97 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=22.88;BaseQRankSum=-0.871;DP=99;ExcessHet=0.0000;FS=1.174;MQ=59.90;MQRankSum=0;QD=22.88;ReadPosRankSum=0.91;SOR=0.941;VarDP=43 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:52:99:52:.:.:0,154 0|1:18,25:43:99:.:0|1:1568550_GTA_G:984,0,670:1568550:9,9,11,14 +chrX 1568573 . G A 1058 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=23.15;BaseQRankSum=0.825;DP=102;ExcessHet=0.0000;FS=1.128;MQ=59.90;MQRankSum=0;QD=23.15;ReadPosRankSum=-0.69;SOR=0.906;VarDP=47 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:52:99:52:.:.:0,154 0|1:18,29:47:99:.:0|1:1568550_GTA_G:1088,0,624:1568550:9,9,13,16 +chrX 1568640 . C A 89 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=1.83;BaseQRankSum=-0.77;DP=121;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=1.83;ReadPosRankSum=1.33;SOR=0.749;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 1:30,35:65:99:.:119,0:15,15,18,17 0/0:.:53:93:53:0,93,1380 +chrX 1568856 . T A 562 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=14.80;BaseQRankSum=-0.532;DP=95;ExcessHet=0.0000;FS=0.000;MQ=59.61;MQRankSum=0;QD=14.80;ReadPosRankSum=0.301;SOR=0.567;VarDP=40 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:52:99:52:.:.:0,447 0|1:23,17:40:99:.:0|1:1568856_T_A:592,0,849:1568856:13,10,9,8 +chrX 1568878 . G A 664 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=15.09;BaseQRankSum=0.258;DP=100;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=15.09;ReadPosRankSum=-0.694;SOR=0.566;VarDP=46 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:54:19:54:.:.:0,19 0|1:25,21:46:99:.:0|1:1568856_T_A:694,0,924:1568856:14,11,11,10 +chrX 1569013 . T C 56 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=1.51;BaseQRankSum=-1.775;DP=105;ExcessHet=0.0000;FS=2.269;MQ=59.71;MQRankSum=1.127;QD=1.51;ReadPosRankSum=-2.212;SOR=0.387;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 1:26,31:57:86:.:86,0:16,10,16,15 0/0:.:48:89:48:0,89,1292 +chrX 1569149 . T C 1007 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=18.85;BaseQRankSum=0.636;DP=113;ExcessHet=0.0000;FS=2.354;MQ=60.00;MQRankSum=0;QD=18.85;ReadPosRankSum=-0.227;SOR=0.407;VarDP=55 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:57:99:57:.:.:0,143 0|1:28,27:55:99:.:0|1:1569149_T_C:1037,0,1083:1569149:19,9,16,11 +chrX 1569150 . G A 3132 . AC=2;AF=0.667;AN=3;AS_AltDP=83;AS_QD=28.49;BaseQRankSum=0.948;DP=118;ExcessHet=0.0000;FS=2.994;MQ=59.89;MQRankSum=0;QD=28.49;ReadPosRankSum=-0.227;SOR=0.399;VarDP=111 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,56:56:99:.:.:2125,0:.:0,0,32,23 0|1:28,27:55:99:0|1:1569149_T_C:1037,0,1083:1569149:19,9,16,11 +chrX 1569336 . G C 3368 . AC=3;AF=1.00;AN=3;AS_AltDP=106;AS_QD=32.06;DP=112;ExcessHet=0.0000;FS=0.000;MQ=59.63;QD=32.06;SOR=1.036;VarDP=106 GT:AD:DP:GQ:PL:SB 1:0,57:57:99:1876,0:0,0,25,32 1/1:0,49:49:99:1522,145,0:0,0,20,29 +chrX 1569433 . G A 209 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=4.78;BaseQRankSum=0.858;DP=107;ExcessHet=0.0000;FS=10.640;MQ=57.71;MQRankSum=-3.065;QD=4.78;ReadPosRankSum=-1.294;SOR=1.207;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 1:22,28:50:99:.:239,0:8,14,18,10 0/0:.:54:43:54:0,43,1211 +chrX 1569444 . A AT 679.97 . AC=2;AF=0.667;AN=3;AS_AltDP=44;AS_QD=8.17;BaseQRankSum=0.317;DP=91;ExcessHet=0.0000;FS=7.546;MQ=58.81;MQRankSum=0;QD=8.17;ReadPosRankSum=1.444;SOR=1.155;VarDP=88 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:24,26:50:67:.:.:67,0:.:9,15,14,5 0|1:20,18:38:99:0|1:1569444_A_AT:652,0,736:1569444:11,9,7,8 +chrX 1569445 . A *,AAT,AATAATAATAAT,AATAATAAT 678.97 . AC=0,0,1,1;AF=0.00,0.00,0.333,0.333;AN=3;AS_AltDP=0,0,18,15;AS_QD=0.00,0.00,1.06,11.05;BaseQRankSum=-0.272;DP=91;ExcessHet=0.0000;FS=6.019;MQ=58.81;MQRankSum=0;QD=9.32;ReadPosRankSum=1.551;SOR=1.084;VarDP=77 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 3:24,0,0,18,0:42:66:.:.:66,831,797,0,834:.:9,15,13,5 0|4:20,0,0,0,15:35:99:0|1:1569444_A_AT:652,621,1417,672,1420,1461,672,1420,1461,1461,0,782,791,791,736:1569444:11,9,7,8 +chrX 1569451 . A T,AATAATAAT,AAATAATAATAATAAT,AATAATAATAATAATAAT,AAATAATAATAATAATAATAATAAT,AAATAAT,AATAATAATAATAAT,AAATAATAATAATAATAATAAT 2701 . AC=3,0,0,0,0,0,0,0;AF=1.00,0.00,0.00,0.00,0.00,0.00,0.00,0.00;AN=3;AS_AltDP=50,11,0,0,0,0,0,0;AS_QD=28.93,25.37,35.53,33.90,34.07,30.56,27.35,32.29;DP=104;ExcessHet=0.0000;FS=0.000;MQ=58.83;QD=44.77;SOR=1.071;VarDP=61 GT:AD:DP:GQ:SB 1:0,19,11,0,0,0,0,0,0:30:99:0,0,19,11 1/1:0,31,0,0,0,0,0,0,0:31:99:0,0,16,14 +chrX 1569503 . C T 166 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=3.21;BaseQRankSum=-1.379;DP=114;ExcessHet=0.0000;FS=3.597;MQ=58.93;MQRankSum=-2.045;QD=3.21;ReadPosRankSum=-0.414;SOR=0.317;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 1:27,34:61:99:.:196,0:17,10,17,17 0/0:.:53:70:53:0,70,1395 +chrX 1569786 . C A 639 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=13.38;BaseQRankSum=0.014;DP=115;ExcessHet=0.0000;FS=2.425;MQ=60.00;MQRankSum=0;QD=13.38;ReadPosRankSum=-0.068;SOR=0.790;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,1716 0/1:25,25:50:99:.:669,0,667:14,11,11,14 +chrX 1569933 . A G 1052 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=22.08;BaseQRankSum=-0.278;DP=114;ExcessHet=0.0000;FS=0.000;MQ=59.33;MQRankSum=-1.208;QD=22.08;ReadPosRankSum=-1.273;SOR=0.741;VarDP=49 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:64:99:64:.:.:0,1716 0|1:21,28:49:99:.:0|1:1569933_A_G:1082,0,760:1569933:11,10,15,13 +chrX 1569945 . G A 3265 . AC=2;AF=0.667;AN=3;AS_AltDP=96;AS_QD=28.16;BaseQRankSum=1.029;DP=120;ExcessHet=0.0000;FS=0.000;MQ=59.67;MQRankSum=-1.208;QD=28.16;ReadPosRankSum=-1.587;SOR=0.637;VarDP=117 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,68:68:99:.:.:2203,0:.:0,0,38,30 0|1:21,28:49:99:0|1:1569933_A_G:1092,0,760:1569933:12,9,15,13 +chrX 1570021 . G C 915 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=21.00;BaseQRankSum=0.845;DP=118;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=21.00;ReadPosRankSum=0.306;SOR=0.610;VarDP=45 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:71:99:71:.:.:0,1293 0|1:21,24:45:99:.:0|1:1570021_G_C:945,0,789:1570021:11,10,12,12 +chrX 1570025 . A G 915 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=21.00;BaseQRankSum=-0.185;DP=116;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=21.00;ReadPosRankSum=0.483;SOR=0.610;VarDP=45 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:71:99:71:.:.:0,1293 0|1:21,24:45:99:.:0|1:1570021_G_C:945,0,799:1570021:11,10,12,12 +chrX 1570037 . C G 851 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=20.02;BaseQRankSum=0.494;DP=115;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=20.02;ReadPosRankSum=0.511;SOR=0.686;VarDP=44 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:71:99:71:.:.:0,1293 0|1:21,23:44:99:.:0|1:1570021_G_C:881,0,802:1570021:11,10,12,11 +chrX 1570208 . CAAA C,CAAAA 1073.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=21,14;AS_QD=31.89,18.73;DP=120;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=30.92;SOR=0.297;VarDP=36 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:71:99:71:0,1293,1293 1/2:1,21,14:36:99:.:1113,293,593,861,0,832:0,1,16,19 +chrX 1570249 . C CA 568.97 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=12.16;BaseQRankSum=-2.336;DP=125;ExcessHet=0.0000;FS=10.571;MQ=60.00;MQRankSum=0;QD=12.16;ReadPosRankSum=1.417;SOR=1.498;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:71:99:71:0,1293 0/1:25,25:50:99:.:608,0,611:15,10,8,17 +chrX 1570289 . C T 629 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=12.67;BaseQRankSum=1.913;DP=125;ExcessHet=0.0000;FS=5.759;MQ=60.00;MQRankSum=0;QD=12.67;ReadPosRankSum=-1.249;SOR=0.835;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:71:99:71:0,1293 0/1:28,24:52:99:.:659,0,692:17,11,10,14 +chrX 1570636 . G A 5406 . AC=3;AF=1.00;AN=3;AS_AltDP=162;AS_QD=33.35;BaseQRankSum=3.265;DP=168;ExcessHet=0.0000;FS=3.257;MQ=59.97;MQRankSum=0;QD=33.35;ReadPosRankSum=-0.604;SOR=0.423;VarDP=163 GT:AD:DP:GQ:PL:SB 1:1,85:86:99:2862,0:0,1,45,40 1/1:0,77:77:99:2574,232,0:0,0,41,36 +chrX 1570902 . C T 3953 . AC=3;AF=1.00;AN=3;AS_AltDP=122;AS_QD=32.38;BaseQRankSum=2.83;DP=126;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=32.38;ReadPosRankSum=-0.378;SOR=0.265;VarDP=123 GT:AD:DP:GQ:PL:SB 1:0,68:68:99:2201,0:0,0,35,33 1/1:1,54:55:99:1782,155,0:1,0,29,25 +chrX 1570939 . A G 3578 . AC=3;AF=1.00;AN=3;AS_AltDP=110;AS_QD=32.80;DP=116;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.80;SOR=0.931;VarDP=110 GT:AD:DP:GQ:PL:SB 1:0,63:63:99:2085,0:0,0,32,31 1/1:0,47:47:99:1523,140,0:0,0,29,18 +chrX 1571220 . A G 3674 . AC=3;AF=1.00;AN=3;AS_AltDP=115;AS_QD=32.21;DP=121;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.21;SOR=0.710;VarDP=115 GT:AD:DP:GQ:PL:SB 1:0,55:55:99:1769,0:0,0,27,28 1/1:0,60:60:99:1935,179,0:0,0,31,29 +chrX 1571250 . A G 3602 . AC=3;AF=1.00;AN=3;AS_AltDP=111;AS_QD=32.72;DP=115;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.72;SOR=0.825;VarDP=111 GT:AD:DP:GQ:PL:SB 1:0,52:52:99:1712,0:0,0,24,28 1/1:0,59:59:99:1920,177,0:0,0,28,31 +chrX 1571417 . G GT,GTT 945.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=35,11;AS_QD=24.42,30.74;BaseQRankSum=1.965;DP=97;ExcessHet=0.0000;FS=3.711;MQ=59.45;MQRankSum=-0.129;QD=20.96;ReadPosRankSum=0.38;SOR=0.793;VarDP=47 GT:AD:DP:GQ:PL:SB 2:0,4,11:15:99:452,106,0:0,0,6,9 1/1:1,31,0:32:72:533,72,0,536,90,554:0,1,21,10 +chrX 1571560 . A C 3647 . AC=3;AF=1.00;AN=3;AS_AltDP=107;AS_QD=34.36;DP=111;ExcessHet=0.0000;FS=0.000;MQ=59.70;QD=34.36;SOR=1.056;VarDP=107 GT:AD:DP:GQ:PL:SB 1:0,53:53:99:1996,0:0,0,21,32 1/1:0,54:54:99:1681,162,0:0,0,24,30 +chrX 1571682 . T C 1022 . AC=1;AF=0.333;AN=3;AS_AltDP=40;AS_QD=15.47;BaseQRankSum=-0.584;DP=130;ExcessHet=0.0000;FS=3.485;MQ=59.65;MQRankSum=0.255;QD=15.47;ReadPosRankSum=-0.075;SOR=1.206;VarDP=68 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:99:60:0,975 0/1:28,40:68:99:.:1052,0,720:16,12,27,13 +chrX 1572224 . A C 549 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=11.58;BaseQRankSum=-0.162;DP=113;ExcessHet=0.0000;FS=5.987;MQ=59.96;MQRankSum=-1.043;QD=11.58;ReadPosRankSum=1.09;SOR=0.372;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:99:60:0,975 0/1:27,23:50:99:.:579,0,689:18,9,11,12 +chrX 1572545 . G A 337 . AC=1;AF=0.333;AN=3;AS_AltDP=40;AS_QD=5.40;BaseQRankSum=0.127;DP=123;ExcessHet=0.0000;FS=2.030;MQ=59.76;MQRankSum=-0.807;QD=5.40;ReadPosRankSum=0.455;SOR=0.977;VarDP=68 GT:AD:DP:GQ:MIN_DP:PL:SB 1:28,40:68:99:.:367,0:13,15,16,24 0/0:.:53:33:52:0,33,962 +chrX 1573199 . GA G 1480.97 . AC=3;AF=1.00;AN=3;AS_AltDP=68;AS_QD=21.11;BaseQRankSum=-0.755;DP=106;ExcessHet=0.0000;FS=0.000;MQ=59.60;MQRankSum=2.233;QD=21.11;ReadPosRankSum=1.245;SOR=0.693;VarDP=72 GT:AD:DP:GQ:PL:SB 1:3,31:34:99:674,0:2,1,15,16 1/1:1,37:38:99:846,104,0:0,1,19,18 +chrX 1573507 . A G 933 . AC=1;AF=1.00;AN=1;AS_AltDP=28;AS_QD=34.39;DP=66;ExcessHet=0.0000;FS=0.000;MQ=58.62;QD=34.39;SOR=0.997;VarDP=28 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,28:28:99:.:963,0:0,0,16,12 ./.:.:37:0:37:0,0,0 +chrX 1573555 . C CAAA,CAAAA 1204.97 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=2,21;AS_QD=32.30,28.13;DP=94;ExcessHet=0.0000;FS=0.000;MQ=56.98;QD=54.09;SOR=1.426;VarDP=23 GT:AD:DP:GQ:MIN_DP:PL:SB 2:0,2,21:23:99:.:1244,310,0:0,0,8,15 0/0:.:50:0:50:0,0,94,0,94,94 +chrX 1573655 . C G 758 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=15.76;BaseQRankSum=0.891;DP=109;ExcessHet=0.0000;FS=1.144;MQ=58.92;MQRankSum=1.441;QD=15.76;ReadPosRankSum=0.561;SOR=0.435;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:58:99:58:0,1062 0/1:21,29:50:99:.:788,0,480:7,14,12,17 +chrX 1573919 . CAA C,CA 2911.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=69,53;AS_QD=34.83,26.13;BaseQRankSum=2.269;DP=149;ExcessHet=0.0000;FS=3.739;MQ=60.00;MQRankSum=0;QD=23.99;ReadPosRankSum=0.883;SOR=0.773;VarDP=123 GT:AD:DP:GQ:PL:SB 1:0,40,30:70:99:1466,0,271:0,0,36,34 1/2:1,29,23:53:99:1485,518,513,748,0,632:0,1,35,17 +chrX 1574150 . T A 764 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=14.70;BaseQRankSum=-1.514;DP=125;ExcessHet=0.0000;FS=10.000;MQ=60.00;MQRankSum=0;QD=14.70;ReadPosRankSum=-2.161;SOR=1.329;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:70:99:70:0,1026 0/1:25,29:54:99:.:794,0,691:15,10,10,19 +chrX 1574171 . T C 34 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=2.00;BaseQRankSum=0.525;DP=92;ExcessHet=0.0000;FS=3.307;MQ=60.00;MQRankSum=0;QD=2.00;ReadPosRankSum=-0.435;SOR=1.550;VarDP=32 GT:AD:DP:GQ:MIN_DP:PL:SB 1:15,17:32:64:.:64,0:7,8,5,12 0/0:.:60:99:60:0,120,1800 +chrX 1574305 . G A 601 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=10.69;BaseQRankSum=-0.583;DP=106;ExcessHet=0.0000;FS=2.236;MQ=60.00;MQRankSum=0;QD=10.69;ReadPosRankSum=0.069;SOR=1.136;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:43:99:43:0,972 0/1:34,25:59:99:.:631,0,944:17,17,15,10 +chrX 1574324 . A G 3490 . AC=3;AF=1.00;AN=3;AS_AltDP=113;AS_QD=31.15;DP=117;ExcessHet=0.0000;FS=0.000;MQ=59.95;QD=31.15;SOR=1.179;VarDP=113 GT:AD:DP:GQ:PL:SB 1:0,57:57:99:1770,0:0,0,39,18 1/1:0,56:56:99:1750,168,0:0,0,29,27 +chrX 1574388 . C T 99 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=2.11;BaseQRankSum=-0.571;DP=127;ExcessHet=0.0000;FS=1.053;MQ=59.91;MQRankSum=-0.888;QD=2.11;ReadPosRankSum=0.109;SOR=0.516;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 1:28,33:61:99:.:129,0:20,8,22,11 0/0:.:66:99:66:0,112,1742 +chrX 1575560 . G A 579 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=13.53;BaseQRankSum=-2.409;DP=112;ExcessHet=0.0000;FS=1.164;MQ=60.00;MQRankSum=0;QD=13.53;ReadPosRankSum=1.07;SOR=0.906;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,1344 0/1:21,24:45:99:.:609,0,596:8,13,8,16 +chrX 1575968 . T C 620 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=14.44;BaseQRankSum=-0.376;DP=99;ExcessHet=0.0000;FS=1.150;MQ=60.00;MQRankSum=0;QD=14.44;ReadPosRankSum=-0.546;SOR=0.922;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:51:15:51:0,15 0/1:21,24:45:99:.:650,0,535:9,12,9,15 +chrX 1576350 . T C 182 . AC=1;AF=0.333;AN=3;AS_AltDP=43;AS_QD=2.65;BaseQRankSum=0.884;DP=139;ExcessHet=0.0000;FS=4.250;MQ=60.00;MQRankSum=0;QD=2.65;ReadPosRankSum=-0.777;SOR=0.455;VarDP=80 GT:AD:DP:GQ:MIN_DP:PL:SB 1:37,43:80:99:.:212,0:15,22,22,21 0/0:.:58:68:58:0,68,1096 +chrX 1576848 . A G 4451 . AC=3;AF=1.00;AN=3;AS_AltDP=134;AS_QD=33.44;DP=136;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.44;SOR=0.818;VarDP=134 GT:AD:DP:GQ:PL:SB 1:0,62:62:99:2114,0:0,0,33,29 1/1:0,72:72:99:2367,216,0:0,0,30,42 +chrX 1577093 . A G 645 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=12.05;BaseQRankSum=-2.194;DP=131;ExcessHet=0.0000;FS=5.645;MQ=60.00;MQRankSum=0;QD=12.05;ReadPosRankSum=-0.238;SOR=0.243;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:72:99:72:0,629 0/1:30,26:56:99:.:675,0,865:21,9,14,12 +chrX 1577325 . CTGGATGGA C,CTGGA 1147.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=27,19;AS_QD=27.81,27.26;DP=95;ExcessHet=0.0000;FS=0.000;MQ=59.01;MQRankSum=0;QD=23.74;SOR=0.627;VarDP=50 GT:AD:DP:GQ:PL:SB 1:4,15,11:30:93:369,0,93:0,1,9,12 1/2:0,12,8:20:99:818,325,336,492,0,467:0,0,5,15 +chrX 1577535 . AGATG A,AGATGGATG 663.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=11,7;AS_QD=31.12,28.52;DP=97;ExcessHet=0.0000;FS=0.000;MQ=56.21;QD=39.06;SOR=2.303;VarDP=18 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:55:99:55:0,665,665 1/2:0,11,7:18:99:.:703,271,238,425,0,402:0,0,14,4 +chrX 1577632 . TATGG T 1747.97 . AC=3;AF=1.00;AN=3;AS_AltDP=45;AS_QD=30.83;BaseQRankSum=0.534;DP=74;ExcessHet=0.0000;FS=0.000;MQ=59.54;MQRankSum=0;QD=38.02;ReadPosRankSum=-0.351;SOR=1.280;VarDP=47 GT:AD:DP:GQ:PL:SB 1:2,16:18:99:492,0:1,1,10,6 1/1:0,29:29:88:1295,88,0:0,0,18,11 +chrX 1577707 . A G 2335 . AC=3;AF=1.00;AN=3;AS_AltDP=73;AS_QD=31.53;BaseQRankSum=2.823;DP=77;ExcessHet=0.0000;FS=7.758;MQ=57.79;MQRankSum=1.015;QD=31.53;ReadPosRankSum=2.19;SOR=0.859;VarDP=75 GT:AD:DP:GQ:PL:SB 1:2,36:38:99:1141,0:0,2,23,13 1/1:0,37:37:99:1224,111,0:0,0,21,16 +chrX 1577728 . CTGGA CTGGATGGATGGA,C 2508.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=44,16;AS_QD=29.27,25.98;DP=87;ExcessHet=0.0000;FS=0.000;MQ=57.39;QD=42.47;SOR=0.831;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,34,0:34:99:1487,0,1487:0,0,18,16 1/2:0,10,16:26:99:1061,626,588,397,0,531:0,0,14,12 +chrX 1577840 . T G 4899 . AC=3;AF=1.00;AN=3;AS_AltDP=114;AS_QD=33.22;DP=118;ExcessHet=0.0000;FS=0.000;MQ=59.59;MQRankSum=0;QD=42.86;SOR=0.237;VarDP=115 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,55:55:99:.:.:2370,0:.:0,0,30,25 1|1:1,59:60:99:0|1:1577840_T_G:2559,171,0:1577840:0,1,26,33 +chrX 1577843 . G A 4865 . AC=3;AF=1.00;AN=3;AS_AltDP=113;AS_QD=30.28;BaseQRankSum=2.187;DP=116;ExcessHet=0.0000;FS=0.000;MQ=59.55;MQRankSum=0;QD=42.94;ReadPosRankSum=1.704;SOR=0.230;VarDP=114 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,54:54:99:.:.:2336,0:.:0,0,30,24 1|1:1,59:60:99:0|1:1577840_T_G:2559,171,0:1577840:0,1,26,33 +chrX 1578351 . A C 3147 . AC=3;AF=1.00;AN=3;AS_AltDP=95;AS_QD=33.44;DP=97;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.44;SOR=0.848;VarDP=95 GT:AD:DP:GQ:PL:SB 1:0,48:48:99:1639,0:0,0,22,26 1/1:0,47:47:99:1538,141,0:0,0,22,25 +chrX 1578615 . G A 3504 . AC=3;AF=1.00;AN=3;AS_AltDP=105;AS_QD=33.66;DP=109;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.66;SOR=0.967;VarDP=105 GT:AD:DP:GQ:PL:SB 1:0,59:59:99:1965,0:0,0,25,34 1/1:0,46:46:99:1569,138,0:0,0,21,25 +chrX 1578752 . T C 2391 . AC=3;AF=1.00;AN=3;AS_AltDP=75;AS_QD=32.28;DP=78;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.28;SOR=0.719;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,41:41:99:1286,0:0,0,23,18 1/1:0,34:34:99:1135,102,0:0,0,14,20 +chrX 1579327 . G A 305 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=6.32;BaseQRankSum=1.332;DP=112;ExcessHet=0.0000;FS=1.051;MQ=59.92;MQRankSum=-0.804;QD=6.32;ReadPosRankSum=-1.192;SOR=0.892;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 1:22,31:53:99:.:335,0:11,11,17,14 0/0:.:54:85:54:0,85,1116 +chrX 1579505 . A T 3470 . AC=3;AF=1.00;AN=3;AS_AltDP=108;AS_QD=32.41;DP=111;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.41;SOR=0.849;VarDP=108 GT:AD:DP:GQ:PL:SB 1:0,53:53:99:1734,0:0,0,25,28 1/1:0,55:55:99:1766,165,0:0,0,33,22 +chrX 1579777 . T C 4320 . AC=3;AF=1.00;AN=3;AS_AltDP=135;AS_QD=32.22;DP=140;ExcessHet=0.0000;FS=0.000;MQ=59.98;QD=32.22;SOR=0.801;VarDP=135 GT:AD:DP:GQ:PL:SB 1:0,68:68:99:2162,0:0,0,35,33 1/1:0,67:67:99:2188,200,0:0,0,36,31 +chrX 1580436 . AAAT A 3895.97 . AC=3;AF=1.00;AN=3;AS_AltDP=90;AS_QD=27.64;BaseQRankSum=-1.011;DP=101;ExcessHet=0.0000;FS=3.039;MQ=59.97;MQRankSum=-0.103;QD=42.77;ReadPosRankSum=0.177;SOR=0.124;VarDP=92 GT:AD:DP:GQ:PL:SB 1:2,47:49:99:2013,0:2,0,28,19 1/1:0,43:43:99:1922,130,0:0,0,19,24 +chrX 1580510 . A AT 3654.97 . AC=3;AF=1.00;AN=3;AS_AltDP=93;AS_QD=24.40;DP=99;ExcessHet=0.0000;FS=0.000;MQ=58.39;QD=39.72;SOR=0.758;VarDP=93 GT:AD:DP:GQ:PL:SB 1:0,47:47:99:1849,0:0,0,22,25 1/1:0,46:46:99:1845,138,0:0,0,23,23 +chrX 1580882 . T C 809 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=7.42;BaseQRankSum=0.225;DP=117;ExcessHet=0.0000;FS=0.000;MQ=59.79;MQRankSum=0.075;QD=7.42;ReadPosRankSum=0.731;SOR=0.720;VarDP=113 GT:AD:DP:GQ:PL:SB 1:28,29:57:80:80,0:13,15,16,13 0/1:26,30:56:99:759,0,705:13,13,12,18 +chrX 1581166 . C T 1033 . AC=2;AF=0.667;AN=3;AS_AltDP=68;AS_QD=8.24;BaseQRankSum=0.193;DP=133;ExcessHet=0.0000;FS=5.411;MQ=60.00;MQRankSum=0;QD=8.24;ReadPosRankSum=0.906;SOR=0.360;VarDP=129 GT:AD:DP:GQ:PL:SB 1:30,33:63:85:85,0:19,11,19,14 0/1:31,35:66:99:978,0,839:18,13,15,20 +chrX 1581206 . C T 915 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=13.70;BaseQRankSum=-0.605;DP=133;ExcessHet=0.0000;FS=2.021;MQ=60.00;MQRankSum=0;QD=13.70;ReadPosRankSum=0.066;SOR=0.445;VarDP=69 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,126 0/1:34,35:69:99:.:945,0,915:21,13,19,16 +chrX 1581621 . A G 573 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=15.08;BaseQRankSum=-0.164;DP=141;ExcessHet=0.0000;FS=1.252;MQ=56.81;MQRankSum=0.63;QD=15.08;ReadPosRankSum=-0.958;SOR=0.888;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,126 0/1:17,23:40:99:.:603,0,451:9,8,10,13 +chrX 1581689 . C T 348 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=7.13;BaseQRankSum=0.648;DP=116;ExcessHet=0.0000;FS=4.159;MQ=54.70;MQRankSum=-0.774;QD=7.13;ReadPosRankSum=0.5;SOR=1.371;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,126 0/1:36,17:53:99:.:378,0,733:18,18,6,11 +chrX 1581903 . G T 147 . AC=1;AF=0.333;AN=3;AS_AltDP=6;AS_QD=5.71;BaseQRankSum=0.542;DP=104;ExcessHet=0.0000;FS=4.467;MQ=54.61;MQRankSum=-0.027;QD=5.71;ReadPosRankSum=-2.127;SOR=2.030;VarDP=31 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,126 0/1:25,6:31:99:.:177,0,955:13,11,5,1 +chrX 1581908 . TATTA T,* 1347.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=55,14;AS_QD=15.37,0.00;BaseQRankSum=-0.539;DP=104;ExcessHet=0.0000;FS=0.000;MQ=55.17;MQRankSum=-0.991;QD=14.60;ReadPosRankSum=0;SOR=0.661;VarDP=95 GT:AD:DP:GQ:PL:SB 1:26,31,0:57:99:235,0,1364:15,11,20,11 1/2:0,24,14:38:99:1152,142,241,910,0,897:0,0,19,19 +chrX 1581911 . TA *,T 1116.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=36,2;AS_QD=0.00,25.44;DP=102;ExcessHet=0.0000;FS=0.000;MQ=54.42;QD=30.42;SOR=0.661;VarDP=38 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:26,31,0:57:99:.:.:235,0,1364:.:15,11,20,11 1|2:0,36,2:38:28:0|1:1581906_GATA_G:1156,69,28,982,0,1022:1581906:0,0,19,19 +chrX 1581971 . T A 1120 . AC=3;AF=1.00;AN=3;AS_AltDP=53;AS_QD=13.86;BaseQRankSum=1.636;DP=93;ExcessHet=0.0000;FS=0.894;MQ=55.55;MQRankSum=1.048;QD=13.86;ReadPosRankSum=1.191;SOR=0.909;VarDP=83 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:27,26:53:29:.:.:29,0:.:14,13,17,9 1|1:3,27:30:47:0|1:1581971_T_A:1121,47,0:1581971:1,0,14,13 +chrX 1582002 . G C 1374 . AC=3;AF=1.00;AN=3;AS_AltDP=62;AS_QD=15.26;BaseQRankSum=0;DP=102;ExcessHet=0.0000;FS=0.000;MQ=56.11;MQRankSum=1.265;QD=15.26;ReadPosRankSum=-1.291;SOR=0.725;VarDP=92 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:27,28:55:75:.:.:75,0:.:17,10,20,8 1|1:3,34:37:68:0|1:1581971_T_A:1329,68,0:1581971:1,0,20,14 +chrX 1582223 . C T 2593 . AC=3;AF=1.00;AN=3;AS_AltDP=78;AS_QD=33.63;DP=86;ExcessHet=0.0000;FS=0.000;MQ=50.66;QD=33.63;SOR=0.798;VarDP=78 GT:AD:DP:GQ:PL:SB 1:0,50:50:99:1608,0:0,0,24,26 1/1:0,28:28:84:1015,84,0:0,0,17,11 +chrX 1582244 . G T 216 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=7.24;BaseQRankSum=1.244;DP=89;ExcessHet=0.0000;FS=11.938;MQ=51.61;MQRankSum=-2.617;QD=7.24;ReadPosRankSum=0.405;SOR=2.462;VarDP=34 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:54:99:54:0,233 0/1:23,11:34:99:.:246,0,613:10,13,9,2 +chrX 1582283 . T C 819 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=18.06;BaseQRankSum=-1.033;DP=101;ExcessHet=0.0000;FS=1.121;MQ=55.92;MQRankSum=-3.154;QD=18.06;ReadPosRankSum=-0.384;SOR=0.815;VarDP=47 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:54:99:54:.:.:0,233 0|1:25,22:47:99:.:0|1:1582283_T_C:849,0,973:1582283:12,13,12,10 +chrX 1582292 . A G 822 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=18.52;BaseQRankSum=0.221;DP=100;ExcessHet=0.0000;FS=1.145;MQ=55.82;MQRankSum=-3.076;QD=18.52;ReadPosRankSum=-0.297;SOR=0.757;VarDP=46 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:54:99:54:.:.:0,233 0|1:24,22:46:99:.:0|1:1582283_T_C:852,0,942:1582283:11,13,12,10 +chrX 1582311 . A G 932 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=17.81;BaseQRankSum=-1.162;DP=109;ExcessHet=0.0000;FS=0.000;MQ=56.85;MQRankSum=-3.565;QD=17.81;ReadPosRankSum=0.508;SOR=0.580;VarDP=54 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:54:99:54:.:.:0,233 0|1:29,25:54:99:.:0|1:1582283_T_C:962,0,1142:1582283:13,16,12,13 +chrX 1582320 . TGTAA T 961.97 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=17.88;BaseQRankSum=-0.207;DP=111;ExcessHet=0.0000;FS=1.010;MQ=57.47;MQRankSum=-3.679;QD=17.88;ReadPosRankSum=0.77;SOR=0.869;VarDP=56 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:54:99:54:.:.:0,233 0|1:30,26:56:99:.:0|1:1582283_T_C:1001,0,1181:1582283:14,16,11,15 +chrX 1582337 . C T 958 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=17.33;BaseQRankSum=0.489;DP=112;ExcessHet=0.0000;FS=2.269;MQ=58.25;MQRankSum=-3.276;QD=17.33;ReadPosRankSum=1.089;SOR=1.136;VarDP=57 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:54:99:54:.:.:0,233 0|1:31,26:57:99:.:0|1:1582283_T_C:988,0,1223:1582283:15,16,10,16 +chrX 1582344 . T A 955 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=16.98;BaseQRankSum=0.311;DP=115;ExcessHet=0.0000;FS=2.225;MQ=58.34;MQRankSum=-3.325;QD=16.98;ReadPosRankSum=0.892;SOR=1.060;VarDP=58 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:54:99:54:.:.:0,233 0|1:32,26:58:99:.:0|1:1582283_T_C:985,0,1245:1582283:15,17,10,16 +chrX 1582460 . C CATTTATTT 762.97 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=15.42;BaseQRankSum=-1.292;DP=115;ExcessHet=0.0000;FS=2.419;MQ=59.82;MQRankSum=0.929;QD=15.42;ReadPosRankSum=-2.673;SOR=1.145;VarDP=52 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:54:99:54:.:.:0,233 0|1:29,23:52:99:.:0|1:1582460_C_CATTTATTT:802,0,1143:1582460:13,16,8,15 +chrX 1582463 . T TAA 1246.97 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=21.08;BaseQRankSum=1.295;DP=116;ExcessHet=0.0000;FS=0.000;MQ=59.83;MQRankSum=-0.888;QD=21.08;ReadPosRankSum=2.285;SOR=0.693;VarDP=61 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:54:99:54:.:.:0,233 0|1:28,33:61:99:.:1|0:1582460_C_CATTTATTT:1286,0,1056:1582460:11,17,13,20 +chrX 1582464 . T TTAATTA 1246.97 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=21.08;BaseQRankSum=0.909;DP=116;ExcessHet=0.0000;FS=0.000;MQ=59.83;MQRankSum=-0.888;QD=21.08;ReadPosRankSum=1.832;SOR=0.693;VarDP=61 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:54:99:54:.:.:0,233 0|1:28,33:61:99:.:1|0:1582460_C_CATTTATTT:1286,0,1056:1582460:11,17,13,20 +chrX 1582479 . T C 1253 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=20.69;BaseQRankSum=0.163;DP=117;ExcessHet=0.0000;FS=0.000;MQ=59.83;MQRankSum=-0.905;QD=20.69;ReadPosRankSum=0.91;SOR=0.641;VarDP=62 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:54:99:54:.:.:0,233 0|1:29,33:62:99:.:1|0:1582460_C_CATTTATTT:1283,0,1068:1582460:11,18,13,20 +chrX 1582608 . CTT C 614.97 . AC=2;AF=0.667;AN=3;AS_AltDP=29;AS_QD=14.53;BaseQRankSum=-0.722;DP=81;ExcessHet=0.0000;FS=12.058;MQ=59.15;MQRankSum=1.006;QD=14.53;ReadPosRankSum=0.228;SOR=0.089;VarDP=45 GT:AD:DP:GQ:PL:SB 1:6,21:27:99:466,0:6,0,10,11 0/1:10,8:18:99:188,0,227:7,3,5,3 +chrX 1582706 . G A 3113 . AC=2;AF=0.667;AN=3;AS_AltDP=73;AS_QD=33.80;BaseQRankSum=-0.08;DP=97;ExcessHet=0.0000;FS=3.493;MQ=60.00;MQRankSum=0;QD=33.80;ReadPosRankSum=0.816;SOR=0.916;VarDP=93 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,53:53:99:.:.:2363,0:.:0,0,20,33 0|1:20,20:40:99:0|1:1582706_G_A:780,0,780:1582706:11,9,11,9 +chrX 1582721 . T C 3126 . AC=2;AF=0.667;AN=3;AS_AltDP=73;AS_QD=33.57;BaseQRankSum=-1.788;DP=97;ExcessHet=0.0000;FS=6.573;MQ=60.00;MQRankSum=0;QD=33.57;ReadPosRankSum=0.17;SOR=0.958;VarDP=94 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,51:51:99:.:.:2295,0:.:0,0,19,32 0|1:21,22:43:99:0|1:1582706_G_A:861,0,816:1582706:12,9,11,11 +chrX 1582722 . G C 3148 . AC=2;AF=0.667;AN=3;AS_AltDP=74;AS_QD=33.10;BaseQRankSum=-1.312;DP=99;ExcessHet=0.0000;FS=4.838;MQ=60.00;MQRankSum=0;QD=33.10;ReadPosRankSum=0.158;SOR=1.038;VarDP=96 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,52:52:99:.:.:2320,0:.:0,0,19,33 0|1:22,22:44:99:0|1:1582706_G_A:858,0,837:1582706:12,10,11,11 +chrX 1582733 . C A 3162 . AC=2;AF=0.667;AN=3;AS_AltDP=76;AS_QD=32.24;BaseQRankSum=-0.983;DP=103;ExcessHet=0.0000;FS=7.971;MQ=60.00;MQRankSum=0;QD=32.24;ReadPosRankSum=0.223;SOR=1.070;VarDP=99 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,55:55:99:.:.:2379,0:.:0,0,20,35 0|1:23,21:44:99:0|1:1582706_G_A:813,0,872:1582706:13,10,10,11 +chrX 1582830 . G C 2521 . AC=2;AF=0.667;AN=3;AS_AltDP=84;AS_QD=21.62;BaseQRankSum=0.077;DP=124;ExcessHet=0.0000;FS=0.751;MQ=59.80;MQRankSum=0;QD=21.62;ReadPosRankSum=0.946;SOR=0.791;VarDP=118 GT:AD:DP:GQ:PL:SB 1:0,53:53:99:1778,0:0,0,22,31 0/1:34,31:65:99:773,0,867:17,17,18,13 +chrX 1582850 . C T 2492 . AC=2;AF=0.667;AN=3;AS_AltDP=84;AS_QD=21.56;BaseQRankSum=-0.282;DP=122;ExcessHet=0.0000;FS=2.691;MQ=60.00;MQRankSum=0;QD=21.56;ReadPosRankSum=-0.054;SOR=0.709;VarDP=117 GT:AD:DP:GQ:PL:SB 1:0,53:53:99:1730,0:0,0,23,30 0/1:33,31:64:99:792,0,841:18,15,16,15 +chrX 1583017 . T TA,TAA 1838.97 . AC=0,2;AF=0.00,0.667;AN=3;AS_AltDP=14,56;AS_QD=18.51,23.77;BaseQRankSum=-0.132;DP=118;ExcessHet=0.0000;FS=4.633;MQ=60.00;MQRankSum=0;QD=20.19;ReadPosRankSum=0.19;SOR=0.446;VarDP=93 GT:AD:DP:GQ:PL:SB 2:0,14,30:44:99:1098,413,0:0,0,24,20 0/2:23,0,26:49:99:780,850,1616,0,766,688:9,14,12,14 +chrX 1583083 . G T 4077 . AC=2;AF=0.667;AN=3;AS_AltDP=96;AS_QD=34.51;BaseQRankSum=0.884;DP=123;ExcessHet=0.0000;FS=1.897;MQ=60.00;MQRankSum=0;QD=34.51;ReadPosRankSum=-0.138;SOR=0.481;VarDP=119 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,66:66:99:.:.:2936,0:.:0,0,34,32 0|1:23,30:53:99:0|1:1583083_G_T:1171,0,809:1583083:13,10,14,16 +chrX 1583089 . C T 4130 . AC=2;AF=0.667;AN=3;AS_AltDP=97;AS_QD=34.38;BaseQRankSum=0.516;DP=122;ExcessHet=0.0000;FS=1.871;MQ=60.00;MQRankSum=0;QD=34.38;ReadPosRankSum=-0.747;SOR=0.474;VarDP=121 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,67:67:99:.:.:2992,0:.:0,0,36,31 0|1:24,30:54:99:0|1:1583083_G_T:1168,0,851:1583083:14,10,14,16 +chrX 1583095 . T A 4107 . AC=2;AF=0.667;AN=3;AS_AltDP=96;AS_QD=34.76;BaseQRankSum=-0.337;DP=120;ExcessHet=0.0000;FS=0.866;MQ=60.00;MQRankSum=0;QD=34.76;ReadPosRankSum=-0.461;SOR=0.582;VarDP=119 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,65:65:99:.:.:2925,0:.:0,0,36,29 0|1:23,31:54:99:0|1:1583083_G_T:1212,0,872:1583083:13,10,15,16 +chrX 1583105 . A G 3989 . AC=2;AF=0.667;AN=3;AS_AltDP=96;AS_QD=33.49;BaseQRankSum=-0.896;DP=123;ExcessHet=0.0000;FS=0.851;MQ=60.00;MQRankSum=0;QD=33.49;ReadPosRankSum=0.184;SOR=0.593;VarDP=120 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,68:68:99:.:.:2956,0:.:0,0,38,30 0|1:24,28:52:99:0|1:1583083_G_T:1063,0,913:1583083:14,10,15,13 +chrX 1583152 . G T 2646 . AC=2;AF=0.667;AN=3;AS_AltDP=88;AS_QD=23.47;BaseQRankSum=0.012;DP=118;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=23.47;ReadPosRankSum=0.085;SOR=0.684;VarDP=114 GT:AD:DP:GQ:PL:SB 1:0,63:63:99:2030,0:0,0,35,28 0/1:26,25:51:99:646,0,666:14,12,12,13 +chrX 1583419 . T C 3207 . AC=2;AF=0.667;AN=3;AS_AltDP=81;AS_QD=28.15;BaseQRankSum=-0.276;DP=123;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=28.15;ReadPosRankSum=-1.91;SOR=0.738;VarDP=115 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,53:53:99:.:.:2265,0:.:0,0,20,33 0|1:34,28:62:99:0|1:1583419_T_C:972,0,1271:1583419:15,19,15,13 +chrX 1583445 . A G 3121 . AC=2;AF=0.667;AN=3;AS_AltDP=79;AS_QD=27.88;BaseQRankSum=-1.37;DP=120;ExcessHet=0.0000;FS=1.638;MQ=60.00;MQRankSum=0;QD=27.88;ReadPosRankSum=-0.569;SOR=0.543;VarDP=113 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,56:56:99:.:.:2318,0:.:0,0,25,31 0|1:34,23:57:99:0|1:1583419_T_C:833,0,1296:1583419:14,20,11,12 +chrX 1583576 . CT C 500.97 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=28.42;BaseQRankSum=-0.781;DP=44;ExcessHet=0.0000;FS=0.000;MQ=56.73;MQRankSum=1.897;QD=28.42;ReadPosRankSum=0.093;SOR=0.892;VarDP=19 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:12:99:12:0,180 0/1:5,14:19:99:.:540,0,117:1,4,3,11 +chrX 1583580 . CTTTCTTTCTTT C,CCTTT 465.97 . AC=1,0;AF=0.333,0.00;AN=3;AS_AltDP=10,0;AS_QD=33.67,23.40;BaseQRankSum=0;DP=52;ExcessHet=0.0000;FS=0.000;MQ=56.76;MQRankSum=1.579;QD=33.67;ReadPosRankSum=1.226;SOR=0.495;VarDP=15 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:12:99:12:0,180,180 0/1:5,10,0:15:99:.:505,0,443,388,170,753:1,4,3,7 +chrX 1583587 . T C,* 100 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=4,0;AS_QD=32.50,27.48;DP=54;ExcessHet=0.0000;FS=0.000;MQ=57.87;QD=32.50;SOR=0.892;VarDP=4 GT:AD:DP:GQ:PL:SB 1:0,4,0:4:99:130,0,130:0,0,0,4 0/2:5,0,10:15:99:505,503,898,0,361,443:1,4,3,7 +chrX 1583591 . T C,TTC,TCTTCCTTC,*,TCTTC 1864 . AC=1,0,1,1,0;AF=0.333,0.00,0.333,0.333,0.00;AN=3;AS_AltDP=4,0,4,10,0;AS_QD=28.96,30.22,25.27,0.00,29.55;DP=54;ExcessHet=0.0000;FS=0.000;MQ=57.05;QD=105.22;SOR=2.833;VarDP=18 GT:AD:DP:GQ:PL:SB 1:0,4,0,0,0,0:4:99:495,0,164,255,214,214:0,0,0,4 3/4:0,0,0,4,10,0:14:99:1399,761,733,1256,771,1230,760,587,770,731,501,150,465,0,423,1029,534,994,558,408,966:0,0,3,11 +chrX 1583654 . T TTCTC 2034.97 . AC=2;AF=0.667;AN=3;AS_AltDP=50;AS_QD=27.65;BaseQRankSum=0.678;DP=83;ExcessHet=0.0000;FS=0.000;MQ=59.33;MQRankSum=-2.006;QD=27.65;ReadPosRankSum=1.588;SOR=0.627;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:1352,0:0,0,14,17 0/1:25,19:44:99:722,0,946:11,14,9,10 +chrX 1583742 . A G 3769 . AC=2;AF=0.667;AN=3;AS_AltDP=89;AS_QD=33.92;BaseQRankSum=-0.146;DP=122;ExcessHet=0.0000;FS=6.231;MQ=59.76;MQRankSum=0;QD=33.92;ReadPosRankSum=-0.713;SOR=1.011;VarDP=112 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,58:58:99:.:.:2578,0:.:0,0,34,24 0|1:23,31:54:99:0|1:1583742_A_G:1221,0,852:1583742:10,13,19,12 +chrX 1583749 . G A 3766 . AC=2;AF=0.667;AN=3;AS_AltDP=89;AS_QD=33.59;BaseQRankSum=1.815;DP=122;ExcessHet=0.0000;FS=5.967;MQ=59.76;MQRankSum=0;QD=33.59;ReadPosRankSum=0.068;SOR=1.052;VarDP=113 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,58:58:99:.:.:2578,0:.:0,0,34,24 0|1:24,31:55:99:0|1:1583742_A_G:1218,0,884:1583742:11,13,19,12 +chrX 1583787 . C G 3840 . AC=2;AF=0.667;AN=3;AS_AltDP=92;AS_QD=32.52;BaseQRankSum=0.886;DP=127;ExcessHet=0.0000;FS=2.922;MQ=59.96;MQRankSum=0;QD=32.52;ReadPosRankSum=1.878;SOR=1.062;VarDP=119 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,62:62:99:.:.:2703,0:.:0,0,37,25 0|1:27,30:57:99:0|1:1583787_C_G:1167,0,982:1583787:14,13,18,12 +chrX 1583803 . G A 3894 . AC=2;AF=0.667;AN=3;AS_AltDP=92;AS_QD=33.83;BaseQRankSum=1.737;DP=121;ExcessHet=0.0000;FS=1.888;MQ=59.96;MQRankSum=0;QD=33.83;ReadPosRankSum=0.171;SOR=0.954;VarDP=116 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,62:62:99:.:.:2748,0:.:0,0,37,25 0|1:24,30:54:99:0|1:1583787_C_G:1176,0,887:1583787:13,11,18,12 +chrX 1584064 . G C 2614 . AC=2;AF=0.667;AN=3;AS_AltDP=89;AS_QD=21.15;BaseQRankSum=0.312;DP=130;ExcessHet=0.0000;FS=1.627;MQ=60.00;MQRankSum=0;QD=21.15;ReadPosRankSum=0.096;SOR=0.508;VarDP=125 GT:AD:DP:GQ:PL:SB 1:0,67:67:99:2103,0:0,0,38,29 0/1:36,22:58:99:541,0,956:23,13,14,8 +chrX 1584225 . A T 3623 . AC=2;AF=0.667;AN=3;AS_AltDP=93;AS_QD=26.47;BaseQRankSum=1.147;DP=141;ExcessHet=0.0000;FS=1.496;MQ=59.83;MQRankSum=0.789;QD=26.47;ReadPosRankSum=-0.125;SOR=0.916;VarDP=138 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,67:67:99:.:.:2746,0:.:0,0,21,33 0|1:45,26:71:99:0|1:1584225_A_T:907,0,1717:1584225:22,23,14,12 +chrX 1584226 . T A 2307 . AC=2;AF=0.667;AN=3;AS_AltDP=80;AS_QD=18.40;BaseQRankSum=2.125;DP=140;ExcessHet=0.0000;FS=2.325;MQ=59.83;MQRankSum=0.789;QD=18.40;ReadPosRankSum=0.208;SOR=0.918;VarDP=127 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:2,54:56:99:.:.:1430,0:.:1,1,21,33 0|1:45,26:71:99:0|1:1584225_A_T:907,0,1717:1584225:22,23,14,12 +chrX 1584673 . C G 528 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=5.21;BaseQRankSum=-0.047;DP=109;ExcessHet=0.0000;FS=2.538;MQ=60.00;MQRankSum=0;QD=5.21;ReadPosRankSum=1.132;SOR=1.007;VarDP=107 GT:AD:DP:GQ:PL:SB 1:29,31:60:24:24,0:14,15,11,20 0/1:26,21:47:99:534,0,713:11,15,9,12 +chrX 1584714 . T C 750 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=7.72;BaseQRankSum=-2.224;DP=109;ExcessHet=0.0000;FS=1.603;MQ=60.00;MQRankSum=0;QD=7.72;ReadPosRankSum=1.57;SOR=0.733;VarDP=101 GT:AD:DP:GQ:PL:SB 1:22,34:56:99:261,0:11,11,16,18 0/1:24,21:45:99:519,0,690:11,13,13,8 +chrX 1584943 . AAG A 3586.97 . AC=2;AF=0.667;AN=3;AS_AltDP=87;AS_QD=32.09;BaseQRankSum=1.59;DP=117;ExcessHet=0.0000;FS=1.873;MQ=59.98;MQRankSum=0;QD=32.09;ReadPosRankSum=-0.936;SOR=1.025;VarDP=113 GT:AD:DP:GQ:PL:SB 1:0,58:58:99:2535,0:0,0,35,23 0/1:26,29:55:99:1091,0,991:14,12,18,11 +chrX 1584971 . A G 2837 . AC=2;AF=0.667;AN=3;AS_AltDP=100;AS_QD=22.75;BaseQRankSum=-0.646;DP=129;ExcessHet=0.0000;FS=4.309;MQ=60.00;MQRankSum=0;QD=22.75;ReadPosRankSum=-0.798;SOR=1.199;VarDP=126 GT:AD:DP:GQ:PL:SB 1:0,68:68:99:2093,0:0,0,41,27 0/1:26,32:58:99:774,0,636:14,12,23,9 +chrX 1585103 . A G 196 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=3.59;BaseQRankSum=-1.729;DP=136;ExcessHet=0.0000;FS=0.000;MQ=58.20;MQRankSum=-1.916;QD=3.59;ReadPosRankSum=0.757;SOR=0.596;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 1:27,36:63:99:.:226,0:12,15,17,19 0/0:.:71:92:71:0,92,1800 +chrX 1585115 . T C 3445 . AC=2;AF=0.667;AN=3;AS_AltDP=104;AS_QD=26.73;BaseQRankSum=-2.252;DP=136;ExcessHet=0.0000;FS=0.000;MQ=57.30;MQRankSum=-3.021;QD=26.73;ReadPosRankSum=-0.817;SOR=0.641;VarDP=130 GT:AD:DP:GQ:PL:SB 1:0,65:65:99:2494,0:0,0,28,37 0/1:26,39:65:99:981,0,690:10,16,14,25 +chrX 1585153 . C T 1402 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=24.27;BaseQRankSum=-0.282;DP=119;ExcessHet=0.0000;FS=3.922;MQ=57.06;MQRankSum=-3.143;QD=24.27;ReadPosRankSum=-0.187;SOR=1.360;VarDP=59 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:59:99:59:.:.:0,1800 0|1:23,36:59:99:.:0|1:1585153_C_T:1432,0,857:1585153:10,13,11,25 +chrX 1585154 . A G 4172 . AC=2;AF=0.667;AN=3;AS_AltDP=99;AS_QD=34.44;BaseQRankSum=-0.637;DP=123;ExcessHet=0.0000;FS=3.256;MQ=56.78;MQRankSum=-3.143;QD=34.44;ReadPosRankSum=-0.187;SOR=1.162;VarDP=122 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,63:63:99:.:.:2770,0:.:0,0,23,40 0|1:23,36:59:99:0|1:1585153_C_T:1432,0,857:1585153:10,13,11,25 +chrX 1585168 . T A 4076 . AC=2;AF=0.667;AN=3;AS_AltDP=98;AS_QD=33.38;BaseQRankSum=0.287;DP=123;ExcessHet=0.0000;FS=0.880;MQ=56.78;MQRankSum=-3.246;QD=33.38;ReadPosRankSum=1.279;SOR=0.914;VarDP=123 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,64:64:99:.:.:2805,0:.:0,0,23,41 0|1:25,34:59:99:0|1:1585153_C_T:1301,0,927:1585153:10,15,12,22 +chrX 1585199 . G A 902 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=8.40;BaseQRankSum=1.28;DP=115;ExcessHet=0.0000;FS=2.488;MQ=57.18;MQRankSum=-2.179;QD=8.40;ReadPosRankSum=2.138;SOR=0.476;VarDP=111 GT:AD:DP:GQ:PL:SB 1:30,29:59:6:6,0:12,18,14,15 0/1:20,32:52:99:926,0,504:7,13,13,19 +chrX 1585367 . A C 2473 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=30.90;BaseQRankSum=-2.814;DP=83;ExcessHet=0.0000;FS=20.751;MQ=59.35;MQRankSum=2.915;QD=30.90;ReadPosRankSum=0.169;SOR=0.051;VarDP=81 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,41:42:99:.:.:1757,0:.:1,0,22,19 0|1:19,20:39:99:0|1:1585367_A_C:746,0,682:1585367:16,3,9,11 +chrX 1585376 . G A 2417 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=29.84;BaseQRankSum=-0.302;DP=83;ExcessHet=0.0000;FS=19.379;MQ=59.35;MQRankSum=2.872;QD=29.84;ReadPosRankSum=1.3;SOR=0.067;VarDP=82 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,40:41:99:.:.:1707,0:.:1,0,21,19 0|1:21,20:41:99:0|1:1585367_A_C:740,0,745:1585367:17,4,9,11 +chrX 1585386 . CAAAA C 1829.97 . AC=2;AF=0.667;AN=3;AS_AltDP=48;AS_QD=29.20;BaseQRankSum=-0.422;DP=95;ExcessHet=0.0000;FS=8.759;MQ=59.56;MQRankSum=3.672;QD=29.20;ReadPosRankSum=1.136;SOR=0.148;VarDP=64 GT:AD:DP:GQ:PL:SB 1:2,32:34:99:1250,0:1,0,17,11 0/1:14,16:30:99:619,0,511:11,3,8,8 +chrX 1585450 . C T 2894 . AC=2;AF=0.667;AN=3;AS_AltDP=95;AS_QD=22.67;BaseQRankSum=0.153;DP=132;ExcessHet=0.0000;FS=0.753;MQ=59.96;MQRankSum=0;QD=22.67;ReadPosRankSum=1.364;SOR=0.554;VarDP=129 GT:AD:DP:GQ:PL:SB 1:0,58:58:99:1916,0:0,0,30,28 0/1:34,37:71:99:1008,0,904:20,14,22,15 +chrX 1585902 . GT G 2549.97 . AC=2;AF=0.667;AN=3;AS_AltDP=92;AS_QD=21.22;BaseQRankSum=1.441;DP=141;ExcessHet=0.0000;FS=0.000;MQ=59.97;MQRankSum=0;QD=21.22;ReadPosRankSum=-1.743;SOR=0.743;VarDP=122 GT:AD:DP:GQ:PL:SB 1:0,58:58:99:1766,0:0,0,26,32 0/1:30,34:64:99:823,0,773:13,17,13,21 +chrX 1585939 . TTTG T 3741.97 . AC=2;AF=0.667;AN=3;AS_AltDP=89;AS_QD=31.77;BaseQRankSum=1.286;DP=132;ExcessHet=0.0000;FS=0.794;MQ=59.93;MQRankSum=0;QD=31.77;ReadPosRankSum=0.784;SOR=0.562;VarDP=119 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,63:63:99:.:.:2779,0:.:0,0,33,30 0|1:30,26:56:99:0|1:1585939_TTTG_T:1002,0,1139:1585939:17,13,14,12 +chrX 1585967 . GTTTGTT G 3994.97 . AC=2;AF=0.667;AN=3;AS_AltDP=94;AS_QD=33.62;BaseQRankSum=0.177;DP=122;ExcessHet=0.0000;FS=5.724;MQ=59.92;MQRankSum=0;QD=33.62;ReadPosRankSum=-0.181;SOR=0.315;VarDP=120 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,67:67:99:.:.:2985,0:.:0,0,38,29 0|1:26,27:53:99:0|1:1585939_TTTG_T:1049,0,1010:1585939:18,8,15,12 +chrX 1585984 . T C 3788 . AC=2;AF=0.667;AN=3;AS_AltDP=91;AS_QD=32.36;BaseQRankSum=-0.953;DP=120;ExcessHet=0.0000;FS=4.450;MQ=59.90;MQRankSum=-0.981;QD=32.36;ReadPosRankSum=1.103;SOR=0.335;VarDP=118 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,65:65:99:.:.:2844,0:.:0,0,40,25 0|1:27,26:53:99:0|1:1585939_TTTG_T:974,0,1013:1585939:20,7,17,9 +chrX 1586174 . C T 3151 . AC=2;AF=0.667;AN=3;AS_AltDP=105;AS_QD=23.74;BaseQRankSum=1.965;DP=139;ExcessHet=0.0000;FS=3.915;MQ=59.49;MQRankSum=1.588;QD=23.74;ReadPosRankSum=-0.587;SOR=0.732;VarDP=134 GT:AD:DP:GQ:PL:SB 1:0,70:70:99:2216,0:0,0,38,32 0/1:29,35:64:99:965,0,670:13,16,19,16 +chrX 1586882 . G C 2884 . AC=2;AF=0.667;AN=3;AS_AltDP=96;AS_QD=24.08;BaseQRankSum=-1.338;DP=125;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=24.08;ReadPosRankSum=-1.896;SOR=0.675;VarDP=121 GT:AD:DP:GQ:PL:SB 1:0,65:65:99:2109,0:0,0,31,34 0/1:25,31:56:99:805,0,642:11,14,12,19 +chrX 1587451 . T TG 2500.97 . AC=2;AF=0.667;AN=3;AS_AltDP=80;AS_QD=26.46;BaseQRankSum=-1.899;DP=109;ExcessHet=0.0000;FS=1.082;MQ=60.00;MQRankSum=0;QD=26.46;ReadPosRankSum=-0.621;SOR=1.005;VarDP=96 GT:AD:DP:GQ:PL:SB 1:0,56:56:99:1855,0:0,0,17,39 0/1:16,24:40:99:685,0,431:7,9,13,11 +chrX 1587608 . TTCCCCTCCCCTCCCTTCCCCTCCTCTACCTTCCCTTCCCCTCCCC T 35.97 . AC=2;AF=0.667;AN=3;AS_AltDP=3;AS_QD=15.00;BaseQRankSum=-0.674;DP=53;ExcessHet=0.0000;FS=0.000;MQ=58.10;MQRankSum=0;QD=6.82;ReadPosRankSum=0.674;SOR=1.112;VarDP=11 GT:AD:DP:GQ:PL:SB 1:2,3:5:72:72,0:1,1,0,3 0/1:5,1:6:3:3,0,205:0,5,0,1 +chrX 1587633 . CTACCT *,C 635.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=1,5;AS_QD=0.00,24.16;DP=43;ExcessHet=0.0000;FS=7.404;MQ=58.79;QD=112.50;SOR=4.615;VarDP=6 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:2,3,0:5:72:.:.:72,0,103:.:1,1,0,3 1|2:0,1,5:6:18:0|1:1587633_CTACCT_*:675,246,199,65,0,18:1587633:0,0,0,6 +chrX 1587643 . TTCCCCTCCCCTCCCCTCCCCTCCCTTCCCCTCCTCTCCCTTCCCTTCCCCTCCCCTCCCCTCCCCTCCCTTCCCCTCCCTTCCCCTCCCCTCCTCTCCCCTCCCTTCCCC *,T 635.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=1,5;AS_QD=0.00,28.66;DP=45;ExcessHet=0.0000;FS=7.404;MQ=57.72;QD=112.50;SOR=4.615;VarDP=6 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:2,3,0:5:72:.:.:72,0,103:.:1,1,0,3 1|2:0,1,5:6:18:0|1:1587633_CTACCT_*:675,246,199,65,0,18:1587633:0,0,0,6 +chrX 1587701 . C *,T 229 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=0,3;AS_QD=36.75,27.84;DP=28;ExcessHet=0.0000;FS=0.000;MQ=56.12;QD=86.33;SOR=4.615;VarDP=3 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 2:0,0,3:3:99:.:.:259,121,0:.:0,0,0,3 1|1:0,5,0:6:47:0|1:1587633_CTACCT_*:675,65,18,497,68,460:1587633:0,0,0,6 +chrX 1587713 . TTCCCC *,T 219.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=0,3;AS_QD=26.26,22.50;DP=28;ExcessHet=0.0000;FS=0.000;MQ=56.12;QD=86.33;SOR=4.615;VarDP=3 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 2:0,0,3:3:99:.:.:259,121,0:.:0,0,0,3 1|1:0,5,0:6:47:0|1:1587633_CTACCT_*:675,65,18,497,68,460:1587633:0,0,0,6 +chrX 1587729 . TCCC *,T 219.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=0,3;AS_QD=36.56,24.46;DP=28;ExcessHet=0.0000;FS=0.000;MQ=56.12;QD=86.33;SOR=4.615;VarDP=3 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 2:0,0,3:3:99:.:.:259,121,0:.:0,0,0,3 1|1:0,5,0:6:47:0|1:1587633_CTACCT_*:675,65,18,497,68,460:1587633:0,0,0,6 +chrX 1587735 . CCT *,C 219.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=0,3;AS_QD=28.71,33.20;DP=28;ExcessHet=0.0000;FS=0.000;MQ=56.12;QD=86.33;SOR=4.615;VarDP=3 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 2:0,0,3:3:99:.:.:259,121,0:.:0,0,0,3 1|1:0,5,0:6:47:0|1:1587633_CTACCT_*:675,65,18,497,68,460:1587633:0,0,0,6 +chrX 1587756 . CCTTCCCCTCCCCTCT C 81.97 . AC=1;AF=1.00;AN=1;AS_AltDP=3;AS_QD=29.70;DP=7;ExcessHet=0.0000;FS=0.000;MQ=56.12;QD=40.33;SOR=2.833;VarDP=3 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,3:3:99:.:121,0:0,0,0,3 ./.:.:3:0:1:0,0,0 +chrX 1587788 . T C,TTCCCCTCTCCTCCCCTCCCTTCCCCTCCCCTCCCCTCCCTTCCCC 58 . AC=1,0;AF=1.00,0.00;AN=1;AS_AltDP=2,0;AS_QD=32.32,32.73;DP=5;ExcessHet=0.0000;FS=0.000;MQ=54.08;QD=44.00;SOR=2.303;VarDP=2 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,2,0:2:88:.:88,0,178:0,0,0,2 ./.:.:3:0:1:0,0,0,0,0,0 +chrX 1590283 . A C 2425 . AC=2;AF=0.667;AN=3;AS_AltDP=80;AS_QD=22.52;BaseQRankSum=1.602;DP=111;ExcessHet=0.0000;FS=1.775;MQ=59.95;MQRankSum=0;QD=22.52;ReadPosRankSum=-2.11;SOR=0.858;VarDP=109 GT:AD:DP:GQ:PL:SB 1:0,57:57:99:1849,0:0,0,30,27 0/1:29,23:52:99:606,0,772:14,15,14,9 +chrX 1590887 . A C 3992 . AC=2;AF=0.667;AN=3;AS_AltDP=98;AS_QD=30.01;BaseQRankSum=-0.361;DP=137;ExcessHet=0.0000;FS=4.782;MQ=60.00;MQRankSum=0;QD=30.01;ReadPosRankSum=1.771;SOR=0.532;VarDP=134 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,66:67:99:.:.:2816,0:.:0,1,28,38 0|1:35,32:67:99:0|1:1590887_A_C:1206,0,1314:1590887:21,14,19,13 +chrX 1590894 . A G 3955 . AC=2;AF=0.667;AN=3;AS_AltDP=97;AS_QD=30.19;BaseQRankSum=-0.686;DP=136;ExcessHet=0.0000;FS=2.548;MQ=60.00;MQRankSum=0;QD=30.19;ReadPosRankSum=1.225;SOR=0.666;VarDP=132 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,63:64:99:.:.:2722,0:.:0,1,27,36 0|1:34,34:68:99:0|1:1590887_A_C:1263,0,1278:1590887:19,15,19,15 +chrX 1591035 . A C 2864 . AC=2;AF=0.667;AN=3;AS_AltDP=96;AS_QD=23.15;BaseQRankSum=-1.116;DP=129;ExcessHet=0.0000;FS=10.487;MQ=60.00;MQRankSum=0;QD=23.15;ReadPosRankSum=0.478;SOR=0.525;VarDP=125 GT:AD:DP:GQ:PL:SB 1:0,66:66:99:2133,0:0,0,39,27 0/1:29,30:59:99:761,0,802:10,19,13,17 +chrX 1591176 . T G 2777 . AC=2;AF=0.667;AN=3;AS_AltDP=91;AS_QD=23.01;BaseQRankSum=-1.674;DP=130;ExcessHet=0.0000;FS=1.692;MQ=60.00;MQRankSum=0;QD=23.01;ReadPosRankSum=-1.924;SOR=0.481;VarDP=122 GT:AD:DP:GQ:PL:SB 1:0,62:62:99:2060,0:0,0,29,33 0/1:31,29:60:99:747,0,852:13,18,15,14 +chrX 1591874 . C T 1121 . AC=2;AF=0.667;AN=3;AS_AltDP=41;AS_QD=17.98;BaseQRankSum=-1.279;DP=76;ExcessHet=0.0000;FS=3.991;MQ=60.00;MQRankSum=0;QD=17.98;ReadPosRankSum=-0.598;SOR=1.302;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:823,0:0,0,21,5 0/1:23,15:38:99:328,0,627:15,8,10,5 +chrX 1592272 . A G 3002 . AC=2;AF=0.667;AN=3;AS_AltDP=98;AS_QD=25.48;BaseQRankSum=-0.664;DP=122;ExcessHet=0.0000;FS=2.007;MQ=60.00;MQRankSum=0;QD=25.48;ReadPosRankSum=0.569;SOR=0.900;VarDP=119 GT:AD:DP:GQ:PL:SB 1:0,58:58:99:1945,0:0,0,35,23 0/1:21,40:61:99:1087,0,477:10,11,20,20 +chrX 1594128 . C T 3388 . AC=2;AF=0.667;AN=3;AS_AltDP=115;AS_QD=21.91;BaseQRankSum=1.607;DP=161;ExcessHet=0.0000;FS=4.419;MQ=60.00;MQRankSum=0;QD=21.91;ReadPosRankSum=-1.016;SOR=0.416;VarDP=156 GT:AD:DP:GQ:PL:SB 1:0,77:77:99:2415,0:0,0,26,51 0/1:41,38:79:99:1003,0,1008:14,27,23,15 +chrX 1594275 . C T 2680 . AC=2;AF=0.667;AN=3;AS_AltDP=92;AS_QD=23.57;BaseQRankSum=-3.09;DP=118;ExcessHet=0.0000;FS=3.147;MQ=60.00;MQRankSum=0;QD=23.57;ReadPosRankSum=0.369;SOR=0.368;VarDP=115 GT:AD:DP:GQ:PL:SB 1:0,63:63:99:1959,0:0,0,34,29 0/1:23,29:52:99:751,0,638:14,9,12,17 +chrX 1595230 . TGGGTCTGCACCGGACATGAGTGGTGAGC T 4572.97 . AC=2;AF=0.667;AN=3;AS_AltDP=108;AS_QD=30.14;BaseQRankSum=-0.531;DP=158;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=30.14;ReadPosRankSum=-1.583;SOR=0.651;VarDP=153 GT:AD:DP:GQ:PL:SB 1:0,80:80:99:3585,0:0,0,39,41 0/1:45,28:73:99:1027,0,1805:22,23,15,13 +chrX 1595720 . C T 2307 . AC=2;AF=0.667;AN=3;AS_AltDP=77;AS_QD=20.32;BaseQRankSum=1.186;DP=122;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=20.32;ReadPosRankSum=0.141;SOR=0.779;VarDP=115 GT:AD:DP:GQ:PL:SB 1:0,52:52:99:1687,0:0,0,22,30 0/1:38,25:63:99:650,0,1026:16,22,9,16 +chrX 1596226 . T TA 1296.97 . AC=2;AF=0.667;AN=3;AS_AltDP=68;AS_QD=15.53;BaseQRankSum=2.256;DP=117;ExcessHet=0.0000;FS=1.015;MQ=60.00;MQRankSum=0;QD=15.53;ReadPosRankSum=-0.576;SOR=0.583;VarDP=86 GT:AD:DP:GQ:PL:SB 1:2,56:58:99:1159,0:1,1,33,23 0/1:16,12:28:99:177,0,289:7,9,2,10 +chrX 1596431 . CTCCTCCTCCTCCTCCTCCATCCCTCCCACCCTCCTAGTGAGGTGGAT C 1336.97 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=28.94;BaseQRankSum=3.148;DP=106;ExcessHet=0.0000;FS=0.000;MQ=59.59;MQRankSum=-0.43;QD=36.21;ReadPosRankSum=-0.207;SOR=0.990;VarDP=38 GT:AD:DP:GQ:MIN_DP:PL:SB 1:4,34:38:99:.:1376,0:1,3,9,25 0/0:.:50:45:50:0,45,1090 +chrX 1596474 . T *,C 175 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=0,7;AS_QD=0.00,7.88;BaseQRankSum=1.465;DP=83;ExcessHet=0.0000;FS=1.080;MQ=56.02;MQRankSum=0.378;QD=7.88;ReadPosRankSum=-1.12;SOR=0.988;VarDP=26 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:4,34,0:38:99:.:.:1376,0,1492:.:1,3,9,25 0|2:19,0,7:26:99:0|1:1596474_T_C:205,262,1019,0,757,736:1596474:7,12,3,4 +chrX 1596478 . T *,A 150 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=0,6;AS_QD=0.00,7.83;BaseQRankSum=0.173;DP=80;ExcessHet=0.0000;FS=3.954;MQ=55.50;MQRankSum=0.34;QD=7.83;ReadPosRankSum=-1.294;SOR=1.276;VarDP=23 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:4,34,0:38:99:.:.:1376,0,1492:.:1,3,9,25 0|2:17,0,6:23:99:0|1:1596474_T_C:180,231,925,0,694,676:1596474:7,10,2,4 +chrX 1596487 . C T 73 . AC=1;AF=0.333;AN=3;AS_AltDP=4;AS_QD=4.68;BaseQRankSum=0.41;DP=60;ExcessHet=0.0000;FS=0.000;MQ=55.30;MQRankSum=-0.116;QD=4.68;ReadPosRankSum=-0.553;SOR=0.368;VarDP=22 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:37:99:37:.:.:0,315 0|1:18,4:22:99:.:0|1:1596474_T_C:103,0,702:1596474:7,11,2,2 +chrX 1596539 . C T 1288 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=29.62;BaseQRankSum=2.559;DP=62;ExcessHet=0.0000;FS=2.811;MQ=55.96;MQRankSum=1.054;QD=39.94;ReadPosRankSum=0.291;SOR=1.897;VarDP=33 GT:AD:DP:GQ:MIN_DP:PL:SB 1:3,30:33:99:.:1318,0:1,2,6,24 0/0:.:26:0:26:0,0,199 +chrX 1596547 . C A 1033 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=33.22;BaseQRankSum=1.257;DP=59;ExcessHet=0.0000;FS=6.422;MQ=55.58;MQRankSum=2.367;QD=33.22;ReadPosRankSum=0.806;SOR=2.636;VarDP=32 GT:AD:DP:GQ:MIN_DP:PL:SB 1:5,27:32:99:.:1063,0:2,3,4,23 0/0:.:26:0:26:0,0,229 +chrX 1596892 . G A 1072 . AC=2;AF=0.667;AN=3;AS_AltDP=37;AS_QD=19.68;BaseQRankSum=2.767;DP=65;ExcessHet=0.0000;FS=0.000;MQ=57.17;MQRankSum=0;QD=19.68;ReadPosRankSum=-1.519;SOR=0.792;VarDP=56 GT:AD:DP:GQ:PL:SB 1:1,14:15:99:422,0:0,1,9,5 0/1:18,23:41:99:680,0,405:12,6,15,8 +chrX 1597507 . A G 2563 . AC=2;AF=0.667;AN=3;AS_AltDP=83;AS_QD=24.70;BaseQRankSum=0.341;DP=108;ExcessHet=0.0000;FS=8.210;MQ=60.00;MQRankSum=0;QD=24.70;ReadPosRankSum=-0.686;SOR=0.261;VarDP=105 GT:AD:DP:GQ:PL:SB 1:0,53:53:99:1726,0:0,0,28,25 0/1:22,30:52:99:867,0,588:15,7,13,17 +chrX 1598378 . C G 3236 . AC=2;AF=0.667;AN=3;AS_AltDP=106;AS_QD=23.67;BaseQRankSum=-0.199;DP=144;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=23.67;ReadPosRankSum=-0.534;SOR=0.763;VarDP=138 GT:AD:DP:GQ:PL:SB 1:0,78:78:99:2518,0:0,0,33,45 0/1:32,28:60:99:748,0,902:15,17,15,13 +chrX 1599115 . T G 3571 . AC=3;AF=1.00;AN=3;AS_AltDP=109;AS_QD=33.04;DP=113;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.04;SOR=0.956;VarDP=109 GT:AD:DP:GQ:PL:SB 1:0,53:53:99:1706,0:0,0,28,25 1/1:0,56:56:99:1895,168,0:0,0,33,23 +chrX 1599467 . G A 724 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=12.57;BaseQRankSum=1.278;DP=116;ExcessHet=0.0000;FS=20.097;MQ=60.00;MQRankSum=0;QD=12.57;ReadPosRankSum=0.733;SOR=2.176;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:63:54:0,63 0/1:31,29:60:99:.:754,0,758:18,13,7,22 +chrX 1599754 . G A 577 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=11.90;BaseQRankSum=0.989;DP=106;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=11.90;ReadPosRankSum=0.35;SOR=0.666;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:63:54:0,63 0/1:28,23:51:99:.:607,0,725:12,16,10,13 +chrX 1601004 . C G 839 . AC=2;AF=0.667;AN=3;AS_AltDP=68;AS_QD=5.91;BaseQRankSum=0.88;DP=148;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=5.91;ReadPosRankSum=-0.814;SOR=0.669;VarDP=147 GT:AD:DP:GQ:PL:SB 1:34,39:73:99:115,0:18,16,22,17 0/1:45,29:74:99:754,0,1261:22,23,12,17 +chrX 1601730 . C T 858 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=14.56;BaseQRankSum=0.911;DP=132;ExcessHet=0.0000;FS=0.983;MQ=60.00;MQRankSum=0;QD=14.56;ReadPosRankSum=-0.744;SOR=0.507;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:99:68:0,1725 0/1:29,32:61:99:.:888,0,750:12,17,15,17 +chrX 1601928 . C T 194 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=4.39;BaseQRankSum=2.591;DP=120;ExcessHet=0.0000;FS=1.139;MQ=60.00;MQRankSum=0;QD=4.39;ReadPosRankSum=-0.748;SOR=1.022;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 1:23,28:51:99:.:224,0:14,9,19,9 0/0:.:66:99:66:0,116,1609 +chrX 1602822 . C CT 1229.97 . AC=2;AF=0.667;AN=3;AS_AltDP=68;AS_QD=11.86;BaseQRankSum=-0.734;DP=137;ExcessHet=0.0000;FS=6.282;MQ=59.43;MQRankSum=-0.723;QD=11.86;ReadPosRankSum=-0.795;SOR=0.786;VarDP=107 GT:AD:DP:GQ:PL:SB 1:12,43:55:99:807,0:4,8,27,16 0/1:27,25:52:99:462,0,568:13,14,11,14 +chrX 1602856 . G C 1334 . AC=1;AF=0.333;AN=3;AS_AltDP=49;AS_QD=20.06;BaseQRankSum=-1.777;DP=135;ExcessHet=0.0000;FS=1.024;MQ=59.76;MQRankSum=-1.075;QD=20.06;ReadPosRankSum=0.374;SOR=0.890;VarDP=68 GT:AD:DP:GQ:MIN_DP:PL:SB 1:19,49:68:99:.:1364,0:9,10,21,28 0/0:.:66:42:66:0,42,1558 +chrX 1602857 . A G 1334 . AC=1;AF=0.333;AN=3;AS_AltDP=49;AS_QD=20.06;BaseQRankSum=-0.267;DP=136;ExcessHet=0.0000;FS=1.024;MQ=59.76;MQRankSum=-1.075;QD=20.06;ReadPosRankSum=0.658;SOR=0.890;VarDP=68 GT:AD:DP:GQ:MIN_DP:PL:SB 1:19,49:68:99:.:1364,0:9,10,21,28 0/0:.:66:42:66:0,42,1558 +chrX 1602867 . G C 844 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=12.31;BaseQRankSum=-0.073;DP=139;ExcessHet=0.0000;FS=1.998;MQ=59.87;MQRankSum=-1.425;QD=12.31;ReadPosRankSum=-0.736;SOR=1.018;VarDP=71 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,149 0/1:36,35:71:99:.:874,0,909:16,20,13,22 +chrX 1602897 . G A 1339 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=19.56;BaseQRankSum=0.36;DP=137;ExcessHet=0.0000;FS=0.000;MQ=59.99;MQRankSum=-0.943;QD=19.56;ReadPosRankSum=1.165;SOR=0.675;VarDP=70 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:67:99:67:.:.:0,149 0|1:34,36:70:99:.:0|1:1602897_G_A:1369,0,1217:1602897:14,20,15,21 +chrX 1602911 . G A 1313 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=20.04;BaseQRankSum=1.104;DP=137;ExcessHet=0.0000;FS=0.924;MQ=59.66;MQRankSum=-0.926;QD=20.04;ReadPosRankSum=0.456;SOR=0.859;VarDP=67 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:67:99:67:.:.:0,149 0|1:32,35:67:99:.:0|1:1602897_G_A:1343,0,1157:1602897:15,17,15,20 +chrX 1603010 . A G 570 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=12.77;BaseQRankSum=0.719;DP=120;ExcessHet=0.0000;FS=2.488;MQ=58.53;MQRankSum=-1.212;QD=12.77;ReadPosRankSum=-0.32;SOR=0.711;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,149 0/1:25,22:47:99:.:600,0,688:14,11,10,12 +chrX 1603025 . T C 652 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=13.37;BaseQRankSum=2.213;DP=119;ExcessHet=0.0000;FS=2.369;MQ=58.50;MQRankSum=-1.195;QD=13.37;ReadPosRankSum=-0.632;SOR=0.404;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,149 0/1:27,24:51:99:.:682,0,706:16,11,12,12 +chrX 1603065 . T C 3430 . AC=2;AF=0.667;AN=3;AS_AltDP=101;AS_QD=26.21;BaseQRankSum=-0.406;DP=133;ExcessHet=0.0000;FS=1.664;MQ=59.13;MQRankSum=-0.803;QD=26.21;ReadPosRankSum=0.932;SOR=0.598;VarDP=132 GT:AD:DP:GQ:PL:SB 1:0,76:76:99:2819,0:0,0,38,38 0/1:31,25:56:99:641,0,848:17,14,11,14 +chrX 1603070 . T C 34 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=0.88;BaseQRankSum=1.45;DP=129;ExcessHet=0.0000;FS=0.000;MQ=58.96;MQRankSum=0.508;QD=0.877;ReadPosRankSum=-0.894;SOR=0.641;VarDP=73 GT:AD:DP:GQ:MIN_DP:PL:SB 1:36,37:73:64:.:64,0:19,17,19,18 0/0:.:54:99:54:0,120,1800 +chrX 1603092 . T G 541 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=10.77;BaseQRankSum=-0.794;DP=131;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=10.77;ReadPosRankSum=1.05;SOR=0.776;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:77:99:77:0,1800 0/1:30,23:53:99:.:571,0,838:15,15,11,12 +chrX 1603154 . A G 3841 . AC=2;AF=0.667;AN=3;AS_AltDP=112;AS_QD=25.47;BaseQRankSum=-1.216;DP=158;ExcessHet=0.0000;FS=5.751;MQ=60.00;MQRankSum=0;QD=25.47;ReadPosRankSum=-1.339;SOR=1.050;VarDP=152 GT:AD:DP:GQ:PL:SB 1:0,81:81:99:3117,0:0,0,48,33 0/1:40,31:71:99:754,0,1118:19,21,18,13 +chrX 1603162 . C T 288 . AC=1;AF=0.333;AN=3;AS_AltDP=44;AS_QD=4.08;BaseQRankSum=-0.19;DP=159;ExcessHet=0.0000;FS=3.046;MQ=60.00;MQRankSum=0;QD=4.08;ReadPosRankSum=-2.006;SOR=0.432;VarDP=78 GT:AD:DP:GQ:MIN_DP:PL:SB 1:34,44:78:99:.:318,0:22,12,25,19 0/0:.:76:99:76:0,120,1800 +chrX 1603300 . A G 1595 . AC=2;AF=0.667;AN=3;AS_AltDP=85;AS_QD=11.28;BaseQRankSum=-0.212;DP=154;ExcessHet=0.0000;FS=3.022;MQ=60.00;MQRankSum=0;QD=11.28;ReadPosRankSum=0.45;SOR=0.789;VarDP=144 GT:AD:DP:GQ:PL:SB 1:28,49:77:99:680,0:13,15,21,28 0/1:31,36:67:99:945,0,792:18,13,18,18 +chrX 1603520 . G A 716 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=15.22;BaseQRankSum=2.227;DP=116;ExcessHet=0.0000;FS=1.100;MQ=59.45;MQRankSum=-0.458;QD=15.22;ReadPosRankSum=-0.451;SOR=0.481;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:49:63:0,49 0/1:23,26:49:99:.:746,0,577:10,13,13,13 +chrX 1603561 . T C 40 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=1.13;BaseQRankSum=1.102;DP=112;ExcessHet=0.0000;FS=5.124;MQ=50.48;MQRankSum=-1.011;QD=1.13;ReadPosRankSum=-1.088;SOR=1.220;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 1:30,32:62:70:.:70,0:14,16,20,12 0/0:.:50:69:50:0,69,1074 +chrX 1603562 . G A 40 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=1.13;BaseQRankSum=-1.47;DP=112;ExcessHet=0.0000;FS=5.124;MQ=50.48;MQRankSum=-1.011;QD=1.13;ReadPosRankSum=-0.986;SOR=1.220;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 1:30,32:62:70:.:70,0:14,16,20,12 0/0:.:50:69:50:0,69,1074 +chrX 1603620 . T C 110 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=3.11;BaseQRankSum=0;DP=95;ExcessHet=0.0000;FS=2.561;MQ=45.78;MQRankSum=0.836;QD=3.11;ReadPosRankSum=-1.972;SOR=0.669;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 1:21,24:45:99:.:140,0:12,9,11,13 0/0:.:50:69:50:0,69,1074 +chrX 1603628 . A G 174 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=4.98;BaseQRankSum=0.637;DP=92;ExcessHet=0.0000;FS=1.216;MQ=45.09;MQRankSum=1.359;QD=4.98;ReadPosRankSum=-2.57;SOR=0.611;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 1:18,23:41:99:.:204,0:10,8,11,12 0/0:.:50:69:50:0,69,1074 +chrX 1603646 . G T 502 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=15.20;BaseQRankSum=1.695;DP=72;ExcessHet=0.0000;FS=2.958;MQ=52.85;MQRankSum=-2.937;QD=15.20;ReadPosRankSum=1.635;SOR=1.057;VarDP=35 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:35:99:35:0,109 0/1:15,20:35:99:.:532,0,317:8,7,8,12 +chrX 1603907 . C A 1031 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=34.23;DP=53;ExcessHet=0.0000;FS=0.000;MQ=58.51;QD=34.23;SOR=0.892;VarDP=31 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,31:31:99:.:1061,0:0,0,17,14 0/0:.:25:35:20:0,35,605 +chrX 1604306 . A G 3066 . AC=2;AF=0.667;AN=3;AS_AltDP=100;AS_QD=24.97;BaseQRankSum=-0.312;DP=128;ExcessHet=0.0000;FS=7.547;MQ=60.00;MQRankSum=0;QD=24.97;ReadPosRankSum=-1.66;SOR=0.565;VarDP=124 GT:AD:DP:GQ:PL:SB 1:1,70:71:99:2300,0:1,0,39,31 0/1:23,30:53:99:796,0,621:8,15,15,15 +chrX 1604640 . T TTCCC 2641.97 . AC=2;AF=0.667;AN=3;AS_AltDP=67;AS_QD=31.92;BaseQRankSum=-1.014;DP=108;ExcessHet=0.0000;FS=1.029;MQ=59.92;MQRankSum=0;QD=31.92;ReadPosRankSum=0.462;SOR=0.535;VarDP=84 GT:AD:DP:GQ:PL:SB 1:0,42:42:99:1828,0:0,0,18,24 0/1:17,25:42:99:853,0,597:7,10,13,12 +chrX 1604913 . G A 1067 . AC=2;AF=0.667;AN=3;AS_AltDP=72;AS_QD=8.50;BaseQRankSum=0.147;DP=134;ExcessHet=0.0000;FS=1.412;MQ=60.00;MQRankSum=0;QD=8.50;ReadPosRankSum=-0.435;SOR=0.893;VarDP=129 GT:AD:DP:GQ:PL:SB 1:34,36:70:69:69,0:15,19,16,20 0/1:23,36:59:99:1028,0,598:13,10,16,20 +chrX 1605036 . G A 1238 . AC=2;AF=0.667;AN=3;AS_AltDP=69;AS_QD=11.63;BaseQRankSum=-0.414;DP=116;ExcessHet=0.0000;FS=3.698;MQ=60.00;MQRankSum=0;QD=11.63;ReadPosRankSum=-0.44;SOR=0.558;VarDP=109 GT:AD:DP:GQ:PL:SB 1:22,32:54:99:227,0:14,8,12,20 0/1:18,37:55:99:1041,0,430:9,9,21,16 +chrX 1605191 . T C 376 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=8.83;BaseQRankSum=-2.574;DP=90;ExcessHet=0.0000;FS=2.729;MQ=60.00;MQRankSum=0;QD=8.83;ReadPosRankSum=0;SOR=0.317;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:48:51:41:0,51 0/1:28,18:46:99:.:406,0,805:9,19,8,10 +chrX 1605238 . C T 413 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=9.23;BaseQRankSum=-1.352;DP=86;ExcessHet=0.0000;FS=6.116;MQ=58.95;MQRankSum=-1.735;QD=9.23;ReadPosRankSum=-0.696;SOR=0.414;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:36:42:35:0,42 0/1:29,19:48:99:.:443,0,720:10,19,10,9 +chrX 1605527 . G A 91 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=2.33;BaseQRankSum=2.661;DP=86;ExcessHet=0.0000;FS=13.159;MQ=59.83;MQRankSum=-0.962;QD=2.33;ReadPosRankSum=0.55;SOR=0.662;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 1:26,26:52:99:.:121,0:19,7,11,15 0/0:.:37:31:32:0,31,763 +chrX 1605989 . C T 2834 . AC=2;AF=0.667;AN=3;AS_AltDP=91;AS_QD=22.91;BaseQRankSum=-1.716;DP=126;ExcessHet=0.0000;FS=11.883;MQ=60.00;MQRankSum=0;QD=22.91;ReadPosRankSum=-0.578;SOR=0.193;VarDP=125 GT:AD:DP:GQ:PL:SB 1:0,60:60:99:2062,0:0,0,26,34 0/1:34,31:65:99:802,0,942:8,26,12,19 +chrX 1606018 . T A 2643 . AC=2;AF=0.667;AN=3;AS_AltDP=88;AS_QD=22.85;BaseQRankSum=-2.597;DP=119;ExcessHet=0.0000;FS=4.002;MQ=60.00;MQRankSum=0;QD=22.85;ReadPosRankSum=1.158;SOR=0.479;VarDP=117 GT:AD:DP:GQ:PL:SB 1:0,60:60:99:1937,0:0,0,31,29 0/1:29,28:57:99:736,0,828:12,17,14,14 +chrX 1606109 . G A 2694 . AC=2;AF=0.667;AN=3;AS_AltDP=90;AS_QD=25.22;BaseQRankSum=0.336;DP=112;ExcessHet=0.0000;FS=3.539;MQ=60.00;MQRankSum=0;QD=25.22;ReadPosRankSum=-0.639;SOR=0.371;VarDP=108 GT:AD:DP:GQ:PL:SB 1:0,60:60:99:1935,0:0,0,34,26 0/1:18,30:48:99:789,0,422:12,6,16,14 +chrX 1606241 . C G 2726 . AC=2;AF=0.667;AN=3;AS_AltDP=92;AS_QD=23.76;BaseQRankSum=1.407;DP=122;ExcessHet=0.0000;FS=11.692;MQ=59.96;MQRankSum=0;QD=23.76;ReadPosRankSum=0.75;SOR=0.595;VarDP=116 GT:AD:DP:GQ:PL:SB 1:0,58:58:99:1825,0:0,0,35,23 0/1:24,34:58:99:931,0,550:8,16,16,18 +chrX 1606816 . T TA 1306.97 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=16.22;BaseQRankSum=1.019;DP=104;ExcessHet=0.0000;FS=8.951;MQ=60.00;MQRankSum=0;QD=16.22;ReadPosRankSum=0.015;SOR=1.661;VarDP=83 GT:AD:DP:GQ:PL:SB 1:1,44:45:99:1064,0:0,1,30,14 0/1:22,16:38:99:282,0,453:11,11,11,5 +chrX 1606898 . C T 277 . AC=1;AF=0.333;AN=3;AS_AltDP=41;AS_QD=4.26;BaseQRankSum=-0.605;DP=132;ExcessHet=0.0000;FS=8.131;MQ=59.94;MQRankSum=0;QD=4.26;ReadPosRankSum=-2.11;SOR=1.265;VarDP=72 GT:AD:DP:GQ:MIN_DP:PL:SB 1:31,41:72:99:.:307,0:14,17,26,15 0/0:.:56:40:56:0,40,1464 +chrX 1606940 . C G 975 . AC=2;AF=0.667;AN=3;AS_AltDP=67;AS_QD=7.91;BaseQRankSum=0.904;DP=129;ExcessHet=0.0000;FS=11.171;MQ=59.92;MQRankSum=1.169;QD=7.91;ReadPosRankSum=1.538;SOR=0.885;VarDP=127 GT:AD:DP:GQ:PL:SB 1:30,39:69:99:252,0:12,18,24,15 0/1:30,28:58:99:753,0,809:13,17,15,13 +chrX 1606985 . C T 1738 . AC=2;AF=0.667;AN=3;AS_AltDP=76;AS_QD=13.29;BaseQRankSum=1.659;DP=137;ExcessHet=0.0000;FS=4.134;MQ=59.66;MQRankSum=0.329;QD=13.29;ReadPosRankSum=0.196;SOR=0.844;VarDP=133 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:31,49:80:99:.:.:759,0:.:11,20,28,21 0|1:26,27:53:99:0|1:1606985_C_T:1009,0,988:1606985:16,10,14,13 +chrX 1606987 . T C 1738 . AC=2;AF=0.667;AN=3;AS_AltDP=76;AS_QD=13.29;BaseQRankSum=0.671;DP=135;ExcessHet=0.0000;FS=4.134;MQ=59.66;MQRankSum=0.329;QD=13.29;ReadPosRankSum=0.462;SOR=0.844;VarDP=133 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:31,49:80:99:.:.:759,0:.:11,20,28,21 0|1:26,27:53:99:0|1:1606985_C_T:1009,0,988:1606985:16,10,14,13 +chrX 1607627 . G C 4375 . AC=3;AF=1.00;AN=3;AS_AltDP=136;AS_QD=32.39;DP=148;ExcessHet=0.0000;FS=0.000;MQ=59.89;QD=32.39;SOR=0.816;VarDP=136 GT:AD:DP:GQ:PL:SB 1:0,69:69:99:2192,0:0,0,36,33 1/1:0,67:67:99:2213,201,0:0,0,28,39 +chrX 1607879 . G A 2997 . AC=3;AF=1.00;AN=3;AS_AltDP=99;AS_QD=23.83;BaseQRankSum=0.01;DP=131;ExcessHet=0.0000;FS=0.000;MQ=53.74;MQRankSum=-3.255;QD=23.83;ReadPosRankSum=-0.34;SOR=0.725;VarDP=127 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:28,34:62:99:.:.:228,0:.:16,12,18,16 1|1:0,65:65:99:0|1:1607879_G_A:2799,196,0:1607879:0,0,39,26 +chrX 1607901 . G T 2889 . AC=3;AF=1.00;AN=3;AS_AltDP=93;AS_QD=24.74;BaseQRankSum=0.261;DP=124;ExcessHet=0.0000;FS=5.983;MQ=51.05;MQRankSum=-4.233;QD=24.74;ReadPosRankSum=1.188;SOR=1.266;VarDP=118 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:25,27:52:99:.:.:100,0:.:12,13,16,11 1|1:0,66:66:99:0|1:1607879_G_A:2819,198,0:1607879:0,0,42,24 +chrX 1607946 . C T 2655 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=30.60;DP=118;ExcessHet=0.0000;FS=0.000;MQ=45.92;QD=43.31;SOR=1.647;VarDP=62 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:65:23:53:.:.:0,23 1|1:0,62:62:99:.:0|1:1607946_C_T:2685,187,0:1607946:0,0,42,20 +chrX 1607962 . A G 3017 . AC=2;AF=0.667;AN=3;AS_AltDP=73;AS_QD=29.88;DP=129;ExcessHet=0.0000;FS=0.000;MQ=48.40;QD=41.74;SOR=1.340;VarDP=73 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:65:23:53:.:.:0,23 1|1:0,73:73:99:.:0|1:1607946_C_T:3047,220,0:1607946:0,0,46,27 +chrX 1608008 . C T 3880 . AC=3;AF=1.00;AN=3;AS_AltDP=127;AS_QD=23.55;BaseQRankSum=1.455;DP=167;ExcessHet=0.0000;FS=3.332;MQ=54.49;MQRankSum=-5.357;QD=23.55;ReadPosRankSum=-2.0;SOR=0.577;VarDP=166 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:39,46:85:99:.:.:327,0:.:22,17,22,24 1|1:0,81:81:99:0|1:1608008_C_T:3583,244,0:1608008:0,0,39,42 +chrX 1608020 . G A 3831 . AC=3;AF=1.00;AN=3;AS_AltDP=126;AS_QD=23.26;BaseQRankSum=2.709;DP=167;ExcessHet=0.0000;FS=4.385;MQ=54.93;MQRankSum=-5.268;QD=23.26;ReadPosRankSum=-1.521;SOR=0.570;VarDP=166 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:40,46:86:99:.:.:312,0:.:23,17,22,24 1|1:0,80:80:99:0|1:1608008_C_T:3549,241,0:1608008:0,0,38,42 +chrX 1608051 . C T 2694 . AC=3;AF=1.00;AN=3;AS_AltDP=118;AS_QD=17.46;BaseQRankSum=1.472;DP=163;ExcessHet=0.0000;FS=8.699;MQ=57.52;MQRankSum=-3.563;QD=17.46;ReadPosRankSum=0.489;SOR=0.662;VarDP=156 GT:AD:DP:GQ:PL:SB 1:38,45:83:99:277,0:23,15,21,24 1/1:0,73:73:99:2447,220,0:0,0,32,41 +chrX 1608110 . A G 2841 . AC=3;AF=1.00;AN=3;AS_AltDP=121;AS_QD=18.76;BaseQRankSum=-2.206;DP=157;ExcessHet=0.0000;FS=9.784;MQ=58.88;MQRankSum=-2.319;QD=18.76;ReadPosRankSum=1.386;SOR=1.334;VarDP=153 GT:AD:DP:GQ:PL:SB 1:32,38:70:99:138,0:17,15,14,24 1/1:0,83:83:99:2733,249,0:0,0,30,53 +chrX 1608280 . C A 1104 . AC=1;AF=0.333;AN=3;AS_AltDP=39;AS_QD=15.32;BaseQRankSum=2.169;DP=158;ExcessHet=0.0000;FS=4.444;MQ=60.00;MQRankSum=0;QD=15.32;ReadPosRankSum=-1.3;SOR=0.449;VarDP=74 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:80:99:80:0,1800 0/1:35,39:74:99:.:1134,0,937:21,14,19,20 +chrX 1608319 . A G 2442 . AC=3;AF=1.00;AN=3;AS_AltDP=115;AS_QD=17.05;BaseQRankSum=-3.717;DP=145;ExcessHet=0.0000;FS=9.856;MQ=60.00;MQRankSum=0;QD=17.05;ReadPosRankSum=-1.303;SOR=0.233;VarDP=145 GT:AD:DP:GQ:PL:SB 1:30,42:72:99:231,0:9,21,20,22 1/1:0,73:73:99:2241,217,0:0,0,34,39 +chrX 1608432 . A G 2672 . AC=3;AF=1.00;AN=3;AS_AltDP=109;AS_QD=20.63;BaseQRankSum=-0.507;DP=139;ExcessHet=0.0000;FS=3.150;MQ=60.00;MQRankSum=0;QD=20.63;ReadPosRankSum=1.52;SOR=0.485;VarDP=131 GT:AD:DP:GQ:PL:SB 1:21,45:66:99:738,0:12,9,26,19 1/1:1,64:65:99:1964,159,0:1,0,27,37 +chrX 1608446 . T C 3306 . AC=3;AF=1.00;AN=3;AS_AltDP=109;AS_QD=25.27;BaseQRankSum=-1.403;DP=135;ExcessHet=0.0000;FS=5.982;MQ=60.00;MQRankSum=0;QD=25.27;ReadPosRankSum=-0.539;SOR=0.284;VarDP=132 GT:AD:DP:GQ:PL:SB 1:23,44:67:99:827,0:15,8,26,18 1/1:0,65:65:99:2509,195,0:0,0,29,36 +chrX 1608455 . G T 1780 . AC=2;AF=0.667;AN=3;AS_AltDP=77;AS_QD=14.14;BaseQRankSum=3.083;DP=132;ExcessHet=0.0000;FS=1.442;MQ=60.00;MQRankSum=0;QD=14.14;ReadPosRankSum=1.32;SOR=0.902;VarDP=128 GT:AD:DP:GQ:PL:SB 1:23,41:64:99:770,0:14,9,26,15 0/1:28,36:64:99:1040,0,651:12,16,17,19 +chrX 1608472 . C T 2818 . AC=3;AF=1.00;AN=3;AS_AltDP=104;AS_QD=22.97;BaseQRankSum=0.286;DP=129;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=22.97;ReadPosRankSum=0.818;SOR=0.739;VarDP=124 GT:AD:DP:GQ:PL:SB 1:20,38:58:99:616,0:11,9,25,13 1/1:0,66:66:99:2232,199,0:0,0,33,33 +chrX 1608577 . A G 2637 . AC=3;AF=1.00;AN=3;AS_AltDP=117;AS_QD=18.27;BaseQRankSum=-2.041;DP=150;ExcessHet=0.0000;FS=3.904;MQ=60.00;MQRankSum=0;QD=18.27;ReadPosRankSum=-0.856;SOR=0.533;VarDP=146 GT:AD:DP:GQ:PL:SB 1:29,43:72:99:371,0:17,12,24,19 1/1:0,74:74:99:2296,222,0:0,0,32,42 +chrX 1608619 . G A 1041 . AC=2;AF=0.667;AN=3;AS_AltDP=75;AS_QD=7.19;BaseQRankSum=0.317;DP=153;ExcessHet=0.0000;FS=14.762;MQ=60.00;MQRankSum=0;QD=7.19;ReadPosRankSum=0.364;SOR=0.897;VarDP=149 GT:AD:DP:GQ:PL:SB 1:36,43:79:99:230,0:20,16,22,21 0/1:38,32:70:99:841,0,957:24,14,9,23 +chrX 1608726 . TTGTCCAGGC T 5172.97 . AC=3;AF=1.00;AN=3;AS_AltDP=117;AS_QD=27.27;DP=131;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.55;SOR=0.710;VarDP=117 GT:AD:DP:GQ:PL:SB 1:0,68:68:99:3010,0:0,0,28,40 1/1:0,49:49:99:2202,148,0:0,0,30,19 +chrX 1608758 . C T 534 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=4.90;BaseQRankSum=1.621;DP=120;ExcessHet=0.0000;FS=2.399;MQ=60.00;MQRankSum=0;QD=4.90;ReadPosRankSum=0.302;SOR=0.712;VarDP=115 GT:AD:DP:GQ:PL:SB 1:30,35:65:99:158,0:11,19,16,19 0/1:34,16:50:99:406,0,981:19,15,11,5 +chrX 1608768 . A G 4048 . AC=3;AF=1.00;AN=3;AS_AltDP=110;AS_QD=29.88;DP=117;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=37.07;SOR=0.730;VarDP=110 GT:AD:DP:GQ:PL:SB 1:0,61:61:99:2332,0:0,0,24,37 1/1:0,49:49:99:1746,147,0:0,0,32,17 +chrX 1608859 . ACTCCAGGCCACCCCTGACCCTACTCCAGCCAAGC A 1408.97 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=24.13;BaseQRankSum=0.588;DP=132;ExcessHet=0.0000;FS=9.299;MQ=59.59;MQRankSum=-0.754;QD=24.13;ReadPosRankSum=-1.506;SOR=0.689;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,983 0/1:23,37:60:99:.:1448,0,830:15,8,16,21 +chrX 1609159 . G A,T 1780 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=34,26;AS_QD=33.26,33.00;DP=127;ExcessHet=0.0000;FS=0.000;MQ=58.63;QD=30.17;SOR=1.255;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,983,983 1/2:0,34,26:60:99:.:1810,781,679,1030,0,952:0,0,37,23 +chrX 1609191 . A G 829 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=16.21;BaseQRankSum=-1.445;DP=122;ExcessHet=0.0000;FS=0.000;MQ=58.08;MQRankSum=-0.875;QD=16.21;ReadPosRankSum=-0.46;SOR=0.616;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,983 0/1:22,31:53:99:.:859,0,581:14,8,19,12 +chrX 1609228 . C T 588 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=12.61;BaseQRankSum=1.825;DP=118;ExcessHet=0.0000;FS=0.000;MQ=57.13;MQRankSum=-2.212;QD=12.61;ReadPosRankSum=0.451;SOR=0.818;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,983 0/1:26,23:49:99:.:618,0,612:15,11,14,9 +chrX 1609241 . C A,CA 149 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=2,11;AS_QD=0.00,6.39;BaseQRankSum=-0.052;DP=118;ExcessHet=0.0000;FS=0.000;MQ=57.21;MQRankSum=-1.416;QD=5.97;ReadPosRankSum=0.984;SOR=0.750;VarDP=30 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,983,983 0/2:17,2,11:30:99:.:179,225,1357,0,377,323:8,9,7,6 +chrX 1609444 . T G 2480 . AC=2;AF=0.667;AN=3;AS_AltDP=80;AS_QD=23.03;BaseQRankSum=-0.717;DP=112;ExcessHet=0.0000;FS=4.045;MQ=60.00;MQRankSum=0;QD=23.03;ReadPosRankSum=1.06;SOR=0.395;VarDP=109 GT:AD:DP:GQ:PL:SB 1:0,57:57:99:1907,0:0,0,28,29 0/1:29,23:52:99:603,0,821:11,18,10,13 +chrX 1609502 . G C 3989 . AC=3;AF=1.00;AN=3;AS_AltDP=111;AS_QD=28.14;DP=114;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=36.21;SOR=0.825;VarDP=111 GT:AD:DP:GQ:PL:SB 1:0,60:60:99:2334,0:0,0,24,36 1/1:0,51:51:99:1685,152,0:0,0,28,23 +chrX 1609514 . C T 243 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=4.33;BaseQRankSum=-0.598;DP=120;ExcessHet=0.0000;FS=0.983;MQ=60.00;MQRankSum=0;QD=4.33;ReadPosRankSum=-0.445;SOR=0.534;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 1:27,36:63:99:.:273,0:10,17,15,21 0/0:.:54:72:54:0,72,1511 +chrX 1609558 . C CCTT 511.97 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=9.50;BaseQRankSum=-1.384;DP=114;ExcessHet=0.0000;FS=1.040;MQ=59.12;MQRankSum=-1.408;QD=9.50;ReadPosRankSum=-1.185;SOR=0.479;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 1:23,35:58:99:.:551,0:9,14,16,19 0/0:.:54:72:54:0,72,1511 +chrX 1609573 . C G 3027 . AC=1;AF=1.00;AN=1;AS_AltDP=70;AS_QD=30.48;DP=131;ExcessHet=0.0000;FS=0.000;MQ=58.33;QD=43.67;SOR=1.418;VarDP=70 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,70:70:99:.:3057,0:0,0,25,45 ./.:.:60:0:60:0,0,0 +chrX 1609597 . T C 2823 . AC=1;AF=1.00;AN=1;AS_AltDP=65;AS_QD=35.55;DP=131;ExcessHet=0.0000;FS=0.000;MQ=58.21;QD=43.89;SOR=1.539;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,65:65:99:.:2853,0:0,0,22,43 ./.:.:65:0:65:0,0,0 +chrX 1609622 . C T 341 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=5.98;BaseQRankSum=1.312;DP=109;ExcessHet=0.0000;FS=12.793;MQ=58.76;MQRankSum=1.792;QD=5.98;ReadPosRankSum=0.324;SOR=2.303;VarDP=62 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:45:99:45:.:.:0,278 0|1:44,18:62:99:.:0|1:1609622_C_T:371,0,1232:1609622:22,22,4,14 +chrX 1609690 . G A 249 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=4.43;BaseQRankSum=-2.433;DP=115;ExcessHet=0.0000;FS=7.439;MQ=58.37;MQRankSum=0.355;QD=4.43;ReadPosRankSum=0.43;SOR=1.437;VarDP=63 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:45:99:45:.:.:0,278 0|1:42,21:63:99:.:1|0:1609622_C_T:279,0,1101:1609622:19,23,14,7 +chrX 1609732 . G C 69 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=5.21;BaseQRankSum=2.083;DP=78;ExcessHet=0.0000;FS=0.000;MQ=56.13;MQRankSum=-1.452;QD=5.21;ReadPosRankSum=-1.738;SOR=0.859;VarDP=19 GT:AD:DP:GQ:MIN_DP:PL:SB 1:8,11:19:99:.:99,0:4,4,6,5 0/0:.:55:0:55:0,0,699 +chrX 1609889 . G A 181 . AC=1;AF=0.333;AN=3;AS_AltDP=8;AS_QD=5.15;BaseQRankSum=-1.092;DP=94;ExcessHet=0.0000;FS=7.502;MQ=59.69;MQRankSum=-1.969;QD=5.15;ReadPosRankSum=-0.099;SOR=0.084;VarDP=41 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:52:99:52:.:.:0,307 0|1:33,8:41:99:.:0|1:1609889_G_A:211,0,1303:1609889:26,7,4,4 +chrX 1609890 . C G 181 . AC=1;AF=0.333;AN=3;AS_AltDP=8;AS_QD=5.15;BaseQRankSum=-1.762;DP=94;ExcessHet=0.0000;FS=7.502;MQ=59.69;MQRankSum=-1.969;QD=5.15;ReadPosRankSum=-0.181;SOR=0.084;VarDP=41 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:52:99:52:.:.:0,307 0|1:33,8:41:99:.:0|1:1609889_G_A:211,0,1303:1609889:26,7,4,4 +chrX 1610004 . C G 1370 . AC=3;AF=1.00;AN=3;AS_AltDP=58;AS_QD=17.50;BaseQRankSum=2.423;DP=84;ExcessHet=0.0000;FS=2.114;MQ=59.18;MQRankSum=0;QD=17.50;ReadPosRankSum=0;SOR=0.430;VarDP=80 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:20,24:44:99:.:.:139,0:.:13,7,10,14 1|1:2,34:36:90:0|1:1610004_C_G:1261,90,0:1610004:1,1,22,12 +chrX 1610017 . CTCCAGCCAAAGCTCCAGGCCGCCCCGCCCCTGCTCCAGCCAACCCTCCAGGCCGCCCCTGCCCCTGT C 713.97 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=17.11;BaseQRankSum=2.121;DP=89;ExcessHet=0.0000;FS=1.157;MQ=58.53;MQRankSum=-1.915;QD=17.11;ReadPosRankSum=-1.44;SOR=0.929;VarDP=44 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:42:99:42:.:.:0,900 0|1:24,20:44:99:.:0|1:1610004_C_G:753,0,946:1610004:13,11,12,8 +chrX 1610080 . C T,* 1562 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=38,0;AS_QD=31.61,0.00;BaseQRankSum=2.108;DP=112;ExcessHet=0.0000;FS=0.900;MQ=60.00;MQRankSum=0;QD=39.80;ReadPosRankSum=0.933;SOR=0.848;VarDP=40 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:2,38,0:40:99:.:.:1592,0,1606:.:1,1,19,15 0|2:24,0,20:44:99:0|1:1610004_C_G:753,825,1833,0,1008,946:1610004:13,11,12,8 +chrX 1610084 . T C,* 1715 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=41,0;AS_QD=29.33,31.18;DP=114;ExcessHet=0.0000;FS=0.919;MQ=60.00;QD=42.56;SOR=0.836;VarDP=41 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,41,0:41:99:.:.:1745,0,1637:.:0,0,19,15 0|2:24,0,20:44:99:0|1:1610004_C_G:753,825,1833,0,1008,946:1610004:13,11,12,8 +chrX 1610102 . G A 3523 . AC=2;AF=0.667;AN=3;AS_AltDP=85;AS_QD=34.50;BaseQRankSum=1.842;DP=109;ExcessHet=0.0000;FS=0.000;MQ=59.08;MQRankSum=0;QD=34.50;ReadPosRankSum=1.357;SOR=0.765;VarDP=103 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,65:66:99:.:.:2779,0:.:0,1,29,36 0|1:17,20:37:99:0|1:1610004_C_G:774,0,572:1610004:9,8,12,8 +chrX 1610167 . C T 194 . AC=1;AF=0.333;AN=3;AS_AltDP=43;AS_QD=2.84;BaseQRankSum=0.157;DP=141;ExcessHet=0.0000;FS=3.006;MQ=60.00;MQRankSum=0;QD=2.84;ReadPosRankSum=-0.287;SOR=0.674;VarDP=79 GT:AD:DP:GQ:MIN_DP:PL:SB 1:36,43:79:99:.:224,0:16,20,23,20 0/0:.:58:63:58:0,63,1523 +chrX 1610194 . T A 51 . AC=1;AF=0.333;AN=3;AS_AltDP=39;AS_QD=1.07;BaseQRankSum=2.005;DP=137;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=1.07;ReadPosRankSum=-0.156;SOR=0.696;VarDP=76 GT:AD:DP:GQ:MIN_DP:PL:SB 1:37,39:76:81:.:81,0:18,19,20,19 0/0:.:58:63:58:0,63,1523 +chrX 1610271 . C T 3510 . AC=2;AF=0.667;AN=3;AS_AltDP=116;AS_QD=25.11;BaseQRankSum=1.357;DP=144;ExcessHet=0.0000;FS=2.913;MQ=60.00;MQRankSum=0;QD=25.11;ReadPosRankSum=0.881;SOR=0.906;VarDP=141 GT:AD:DP:GQ:PL:SB 1:2,82:84:99:2605,0:2,0,34,48 0/1:23,34:57:99:935,0,584:11,12,17,17 +chrX 1610524 . G A 2648 . AC=2;AF=0.667;AN=3;AS_AltDP=65;AS_QD=31.88;BaseQRankSum=0.494;DP=91;ExcessHet=0.0000;FS=2.449;MQ=59.13;MQRankSum=0;QD=31.88;ReadPosRankSum=1.594;SOR=0.355;VarDP=84 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,51:51:99:.:.:2152,0:.:0,0,23,14 0|1:19,14:33:99:0|1:1610524_G_A:526,0,735:1610524:14,5,7,4 +chrX 1610527 . T C 2715 . AC=2;AF=0.667;AN=3;AS_AltDP=67;AS_QD=31.92;BaseQRankSum=-1.714;DP=92;ExcessHet=0.0000;FS=2.429;MQ=58.72;MQRankSum=-1.192;QD=31.92;ReadPosRankSum=0.742;SOR=0.394;VarDP=86 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,52:52:99:.:.:2177,0:.:0,0,24,14 0|1:19,15:34:99:0|1:1610524_G_A:568,0,732:1610524:14,5,8,4 +chrX 1610536 . G A 2531 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=30.86;BaseQRankSum=-1.316;DP=92;ExcessHet=0.0000;FS=0.000;MQ=58.60;MQRankSum=-1.26;QD=30.86;ReadPosRankSum=0.318;SOR=0.620;VarDP=83 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,49:49:99:.:.:2080,0:.:0,0,24,14 0|1:21,13:34:99:0|1:1610524_G_A:481,0,792:1610524:14,7,8,4 +chrX 1610558 . T TCCCCTGCCCCTACTCCAGCCAAGCCCCCAGGTCACTCCTACTCCAGCCAAACCTCCAGGCCA,TCCCCTGCCCCTACTCCAGCCAAGCCCCCAGGTCACTCCTACTCCAGCCAAACCTCCAGGCCACCCCTGCCCCTACTCCAGCTAAGACTCCAGGCCA 2649.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=49,24;AS_QD=24.54,16.16;BaseQRankSum=-0.225;DP=132;ExcessHet=0.0000;FS=0.000;MQ=58.11;MQRankSum=-2.519;QD=26.89;ReadPosRankSum=-4.379;SOR=0.704;VarDP=100 GT:AD:DP:GQ:PL:SB 1:0,49,0:49:99:1865,0,2406:0,0,24,25 0/2:27,0,24:51:99:824,943,2237,0,1133,1032:14,13,14,10 +chrX 1610994 . G A 2718 . AC=2;AF=0.667;AN=3;AS_AltDP=91;AS_QD=21.81;BaseQRankSum=-0.088;DP=134;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=21.81;ReadPosRankSum=0.558;SOR=0.704;VarDP=126 GT:AD:DP:GQ:PL:SB 1:0,56:56:99:1851,0:0,0,27,29 0/1:35,35:70:99:897,0,877:18,17,20,15 +chrX 1611317 . T C 2843 . AC=2;AF=0.667;AN=3;AS_AltDP=94;AS_QD=23.94;BaseQRankSum=-1.309;DP=124;ExcessHet=0.0000;FS=7.295;MQ=60.00;MQRankSum=0;QD=23.94;ReadPosRankSum=0.978;SOR=0.596;VarDP=120 GT:AD:DP:GQ:PL:SB 1:0,57:57:99:1896,0:0,0,32,25 0/1:26,37:63:99:977,0,726:10,16,19,18 +chrX 1611353 . G C 3057 . AC=2;AF=0.667;AN=3;AS_AltDP=100;AS_QD=23.56;BaseQRankSum=0.349;DP=134;ExcessHet=0.0000;FS=9.884;MQ=60.00;MQRankSum=0;QD=23.56;ReadPosRankSum=0.849;SOR=0.465;VarDP=131 GT:AD:DP:GQ:PL:SB 1:0,64:64:99:2119,0:0,0,37,27 0/1:31,36:67:99:968,0,796:11,20,16,20 +chrX 1611378 . A G 2944 . AC=2;AF=0.667;AN=3;AS_AltDP=102;AS_QD=22.70;BaseQRankSum=0.342;DP=139;ExcessHet=0.0000;FS=19.702;MQ=60.00;MQRankSum=0;QD=22.70;ReadPosRankSum=-0.654;SOR=0.253;VarDP=131 GT:AD:DP:GQ:PL:SB 1:0,66:66:99:2028,0:0,0,37,29 0/1:29,36:65:99:946,0,713:7,22,16,20 +chrX 1611444 . T C 3311 . AC=2;AF=0.667;AN=3;AS_AltDP=111;AS_QD=23.04;BaseQRankSum=0.99;DP=147;ExcessHet=0.0000;FS=2.563;MQ=60.00;MQRankSum=0;QD=23.04;ReadPosRankSum=0.506;SOR=0.443;VarDP=145 GT:AD:DP:GQ:PL:SB 1:0,70:70:99:2212,0:0,0,32,38 0/1:34,41:75:99:1129,0,866:13,21,19,22 +chrX 1611574 . C T 2715 . AC=2;AF=0.667;AN=3;AS_AltDP=67;AS_QD=25.42;BaseQRankSum=1.997;DP=110;ExcessHet=0.0000;FS=25.247;MQ=57.99;MQRankSum=-3.871;QD=25.42;ReadPosRankSum=0.62;SOR=1.219;VarDP=108 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,46:46:99:.:.:2018,0:.:0,0,16,30 0|1:41,21:62:99:0|1:1611574_C_T:727,0,1611:1611574:27,14,8,13 +chrX 1611584 . C T 2549 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=25.04;BaseQRankSum=2.734;DP=104;ExcessHet=0.0000;FS=25.981;MQ=57.87;MQRankSum=-4.076;QD=25.04;ReadPosRankSum=2.186;SOR=1.102;VarDP=103 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,43:43:99:.:.:1915,0:.:0,0,15,28 0|1:41,19:60:99:0|1:1611574_C_T:664,0,1647:1611574:28,13,8,11 +chrX 1611589 . T G 2399 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=24.29;BaseQRankSum=2.61;DP=102;ExcessHet=0.0000;FS=25.976;MQ=57.59;MQRankSum=-4.239;QD=24.29;ReadPosRankSum=2.461;SOR=1.032;VarDP=100 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,40:40:99:.:.:1800,0:.:0,0,14,26 0|1:42,18:60:99:0|1:1611574_C_T:629,0,1680:1611574:29,13,8,10 +chrX 1611624 . T G 1052 . AC=2;AF=0.667;AN=3;AS_AltDP=41;AS_QD=13.04;BaseQRankSum=-1.188;DP=87;ExcessHet=0.0000;FS=18.028;MQ=56.75;MQRankSum=-4.421;QD=13.04;ReadPosRankSum=0.989;SOR=0.958;VarDP=83 GT:AD:DP:GQ:PL:SB 1:0,22:22:99:728,0:0,0,9,13 0/1:42,19:61:99:354,0,1128:28,14,7,12 +chrX 1611701 . C T 39 . AC=1;AF=0.333;AN=3;AS_AltDP=2;AS_QD=34.50;DP=36;ExcessHet=0.0000;FS=0.000;MQ=50.99;QD=34.50;SOR=0.693;VarDP=2 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,2:2:69:.:69,0:0,0,1,1 0/0:.:34:0:34:0,0,903 +chrX 1611971 . T C 306 . AC=1;AF=0.333;AN=3;AS_AltDP=10;AS_QD=33.60;DP=45;ExcessHet=0.0000;FS=0.000;MQ=55.26;QD=33.60;SOR=1.609;VarDP=10 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,10:10:99:.:336,0:0,0,7,3 0/0:.:35:30:33:0,30,630 +chrX 1612062 . C T 2848 . AC=3;AF=1.00;AN=3;AS_AltDP=91;AS_QD=31.28;BaseQRankSum=2.174;DP=94;ExcessHet=0.0000;FS=0.000;MQ=53.29;MQRankSum=-1.133;QD=31.28;ReadPosRankSum=0.631;SOR=0.364;VarDP=92 GT:AD:DP:GQ:PL:SB 1:1,43:44:99:1325,0:1,0,25,18 1/1:0,48:48:99:1553,144,0:0,0,27,21 +chrX 1612103 . C T 2764 . AC=2;AF=0.667;AN=3;AS_AltDP=72;AS_QD=26.36;BaseQRankSum=1.658;DP=108;ExcessHet=0.0000;FS=2.743;MQ=53.80;MQRankSum=-4.627;QD=26.36;ReadPosRankSum=-1.997;SOR=0.445;VarDP=106 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,51:51:99:.:.:2055,0:.:0,0,28,23 0|1:34,21:55:99:0|1:1612103_C_T:739,0,1293:1612103:21,13,11,10 +chrX 1612127 . A G 2900 . AC=2;AF=0.667;AN=3;AS_AltDP=71;AS_QD=27.38;BaseQRankSum=0.562;DP=110;ExcessHet=0.0000;FS=3.793;MQ=55.01;MQRankSum=-4.068;QD=27.38;ReadPosRankSum=-2.326;SOR=0.461;VarDP=107 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,43:43:99:.:.:1904,0:.:0,0,21,22 0|1:36,28:64:99:0|1:1612103_C_T:1026,0,1427:1612103:21,15,14,14 +chrX 1612128 . T A 2900 . AC=2;AF=0.667;AN=3;AS_AltDP=71;AS_QD=27.38;BaseQRankSum=0.718;DP=112;ExcessHet=0.0000;FS=3.793;MQ=55.09;MQRankSum=-4.068;QD=27.38;ReadPosRankSum=-2.533;SOR=0.461;VarDP=107 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,43:43:99:.:.:1904,0:.:0,0,21,22 0|1:36,28:64:99:0|1:1612103_C_T:1026,0,1427:1612103:21,15,14,14 +chrX 1612179 . G C 2030 . AC=2;AF=0.667;AN=3;AS_AltDP=73;AS_QD=20.00;BaseQRankSum=0.294;DP=116;ExcessHet=0.0000;FS=0.815;MQ=57.39;MQRankSum=-2.772;QD=20.00;ReadPosRankSum=0.954;SOR=0.606;VarDP=103 GT:AD:DP:GQ:PL:SB 1:0,43:43:99:1282,0:0,0,18,25 0/1:30,30:60:99:778,0,766:16,14,18,12 +chrX 1612285 . CAA C 1967.97 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=22.55;BaseQRankSum=0.38;DP=118;ExcessHet=0.0000;FS=5.981;MQ=59.54;MQRankSum=1.625;QD=22.55;ReadPosRankSum=1.045;SOR=0.652;VarDP=89 GT:AD:DP:GQ:PL:SB 1:0,38:38:99:1342,0:0,0,19,18 0/1:28,23:51:99:665,0,823:11,17,14,9 +chrX 1612605 . C T 741 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=14.83;BaseQRankSum=1.819;DP=115;ExcessHet=0.0000;FS=2.304;MQ=59.56;MQRankSum=-0.852;QD=14.83;ReadPosRankSum=0.553;SOR=0.563;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,1262 0/1:23,29:52:99:.:771,0,544:10,13,15,14 +chrX 1613131 . CCTTT C 755.97 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=15.90;BaseQRankSum=2.153;DP=116;ExcessHet=0.0000;FS=1.102;MQ=60.00;MQRankSum=0;QD=15.90;ReadPosRankSum=-0.988;SOR=0.515;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,1262 0/1:29,21:50:99:.:795,0,1134:11,18,9,12 +chrX 1613176 . C CTTCT 1872.97 . AC=1;AF=0.333;AN=3;AS_AltDP=45;AS_QD=31.84;DP=112;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=42.49;SOR=1.154;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,45:45:99:.:1912,0:0,0,18,27 0/0:.:49:99:49:0,99,1380 +chrX 1613199 . C CTT 514.97 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=14.97;BaseQRankSum=-0.062;DP=107;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.97;ReadPosRankSum=-0.022;SOR=0.593;VarDP=37 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,228 0/1:19,18:37:99:.:554,0,671:9,6,8,6 +chrX 1613709 . C G 913 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=12.74;BaseQRankSum=0.965;DP=136;ExcessHet=0.0000;FS=4.537;MQ=60.00;MQRankSum=0;QD=12.74;ReadPosRankSum=0.412;SOR=0.848;VarDP=74 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,228 0/1:39,35:74:99:.:943,0,1043:22,17,15,20 +chrX 1613820 . C T 575 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=12.87;BaseQRankSum=1.988;DP=108;ExcessHet=0.0000;FS=1.153;MQ=60.00;MQRankSum=0;QD=12.87;ReadPosRankSum=-0.309;SOR=1.022;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,228 0/1:25,22:47:99:.:605,0,602:11,14,8,14 +chrX 1613931 . G A 645 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=14.06;BaseQRankSum=0.579;DP=108;ExcessHet=0.0000;FS=4.047;MQ=60.00;MQRankSum=0;QD=14.06;ReadPosRankSum=0.392;SOR=0.313;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,228 0/1:23,25:48:99:.:675,0,577:8,15,12,13 +chrX 1614164 . G T 383 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=11.47;BaseQRankSum=1.541;DP=98;ExcessHet=0.0000;FS=0.000;MQ=58.81;MQRankSum=-1.127;QD=11.47;ReadPosRankSum=0.465;SOR=0.559;VarDP=36 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,228 0/1:21,15:36:99:.:413,0,592:9,12,7,8 +chrX 1614372 . ACAC A 875.97 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=20.80;BaseQRankSum=-0.995;DP=108;ExcessHet=0.0000;FS=6.473;MQ=59.50;MQRankSum=1.6;QD=20.80;ReadPosRankSum=-0.049;SOR=1.112;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,228 0/1:20,24:44:99:.:915,0,701:8,12,15,9 +chrX 1614455 . G T 716 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=17.76;BaseQRankSum=-0.564;DP=101;ExcessHet=0.0000;FS=4.506;MQ=60.00;MQRankSum=0;QD=17.76;ReadPosRankSum=0.529;SOR=0.743;VarDP=42 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:59:99:59:.:.:0,228 0|1:21,21:42:99:.:0|1:1614455_G_T:746,0,808:1614455:8,13,12,9 +chrX 1614478 . C T 723 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=17.51;BaseQRankSum=-1.187;DP=103;ExcessHet=0.0000;FS=4.388;MQ=60.00;MQRankSum=0;QD=17.51;ReadPosRankSum=1.185;SOR=1.143;VarDP=43 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:59:99:59:.:.:0,228 0|1:22,21:43:99:.:0|1:1614455_G_T:753,0,840:1614455:10,12,13,8 +chrX 1614890 . G A 683 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=15.17;BaseQRankSum=-1.142;DP=109;ExcessHet=0.0000;FS=1.110;MQ=60.00;MQRankSum=0;QD=15.17;ReadPosRankSum=0.557;SOR=0.881;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,228 0/1:21,26:47:99:.:713,0,578:9,12,10,16 +chrX 1614999 . G C 928 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=14.09;BaseQRankSum=1.075;DP=129;ExcessHet=0.0000;FS=10.276;MQ=60.00;MQRankSum=0;QD=14.09;ReadPosRankSum=0.356;SOR=0.505;VarDP=68 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,228 0/1:33,35:68:99:.:958,0,858:22,11,16,19 +chrX 1615027 . G A 742 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=12.45;BaseQRankSum=-0.155;DP=122;ExcessHet=0.0000;FS=3.468;MQ=60.00;MQRankSum=0;QD=12.45;ReadPosRankSum=0.663;SOR=1.174;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,228 0/1:33,29:62:99:.:772,0,896:17,16,18,11 +chrX 1615101 . T C 727 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=14.56;BaseQRankSum=-2.175;DP=116;ExcessHet=0.0000;FS=2.419;MQ=60.00;MQRankSum=0;QD=14.56;ReadPosRankSum=1.226;SOR=0.383;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,228 0/1:23,29:52:99:.:757,0,634:8,15,13,16 +chrX 1615493 . T A 1552 . AC=2;AF=0.667;AN=3;AS_AltDP=48;AS_QD=32.96;DP=108;ExcessHet=0.0000;FS=0.000;MQ=59.67;QD=32.96;SOR=0.693;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,228 1/1:0,48:48:99:.:1582,144,0:0,0,24,24 +chrX 1615772 . C A 3759 . AC=3;AF=1.00;AN=3;AS_AltDP=118;AS_QD=32.11;DP=120;ExcessHet=0.0000;FS=0.000;MQ=59.96;QD=32.11;SOR=0.798;VarDP=118 GT:AD:DP:GQ:PL:SB 1:0,56:56:99:1821,0:0,0,21,35 1/1:0,62:62:99:1968,186,0:0,0,35,27 +chrX 1615847 . G A 160 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=4.32;BaseQRankSum=0.443;DP=116;ExcessHet=0.0000;FS=6.514;MQ=60.00;MQRankSum=0;QD=4.32;ReadPosRankSum=0.19;SOR=0.914;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 1:19,25:44:99:.:190,0:12,7,10,15 0/0:.:72:99:72:0,120,1800 +chrX 1616030 . C CT 648.97 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=11.28;BaseQRankSum=-0.426;DP=136;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=11.28;ReadPosRankSum=2.453;SOR=0.760;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:70:64:0,70 0/1:31,30:61:99:.:688,0,746:16,15,16,14 +chrX 1616045 . T C 1985 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=32.50;DP=131;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.50;SOR=0.899;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:70:64:0,70 1/1:0,62:62:99:.:2015,186,0:0,0,34,28 +chrX 1616195 . ATTTTTGTAT A 2021.97 . AC=2;AF=0.667;AN=3;AS_AltDP=46;AS_QD=24.92;DP=114;ExcessHet=0.0000;FS=0.000;MQ=59.90;QD=44.80;SOR=1.329;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:70:64:0,70 1/1:0,46:46:99:.:2061,139,0:0,0,29,17 +chrX 1616331 . T G 2272 . AC=2;AF=0.667;AN=3;AS_AltDP=71;AS_QD=32.42;DP=135;ExcessHet=0.0000;FS=0.000;MQ=59.93;QD=32.42;SOR=1.042;VarDP=71 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:70:64:0,70 1/1:0,71:71:99:.:2302,212,0:0,0,30,41 +chrX 1616530 . T C 669 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=13.98;BaseQRankSum=0.021;DP=117;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.98;ReadPosRankSum=2.339;SOR=0.856;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:70:64:0,70 0/1:25,25:50:99:.:699,0,698:14,11,15,10 +chrX 1617024 . T C 1081 . AC=1;AF=0.333;AN=3;AS_AltDP=40;AS_QD=16.83;BaseQRankSum=0.01;DP=135;ExcessHet=0.0000;FS=6.830;MQ=59.60;MQRankSum=-0.775;QD=16.83;ReadPosRankSum=1.733;SOR=0.787;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:70:64:0,70 0/1:26,40:66:99:.:1111,0,641:10,16,23,17 +chrX 1617655 . G A 717 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=14.65;BaseQRankSum=1.119;DP=119;ExcessHet=0.0000;FS=6.168;MQ=59.52;MQRankSum=1.668;QD=14.65;ReadPosRankSum=-0.2;SOR=1.664;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:70:64:0,70 0/1:22,29:51:99:.:747,0,463:12,10,21,8 +chrX 1617973 . T C 109 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=2.07;BaseQRankSum=0.214;DP=132;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=2.07;ReadPosRankSum=-0.453;SOR=0.603;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 1:31,36:67:99:.:139,0:18,13,20,16 0/0:.:65:49:65:0,49,1404 +chrX 1619549 . TATAATA T,TATAATAATA 661.97 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=14,17;AS_QD=26.34,27.74;DP=118;ExcessHet=0.0000;FS=0.000;MQ=59.71;QD=22.61;SOR=0.892;VarDP=31 GT:AD:DP:GQ:MIN_DP:PL:SB 2:0,14,17:31:99:.:701,201,0:0,0,14,17 0/0:.:60:40:60:0,40,1193,40,1193,1193 +chrX 1620166 . C CT 119.97 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=10.60;BaseQRankSum=0.772;DP=102;ExcessHet=0.0000;FS=24.362;MQ=59.46;MQRankSum=-0.452;QD=10.60;ReadPosRankSum=0.59;SOR=3.411;VarDP=15 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,521 0/1:4,11:15:35:.:159,0,35:0,4,10,1 +chrX 1620927 . C CA 938.97 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=26.43;BaseQRankSum=-0.261;DP=71;ExcessHet=0.0000;FS=3.641;MQ=60.00;MQRankSum=0;QD=26.43;ReadPosRankSum=0.984;SOR=0.761;VarDP=37 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,36:37:99:.:978,0:1,0,15,21 0/0:.:43:20:28:0,20,775 +chrX 1621037 . C A 115 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=2.84;BaseQRankSum=-0.638;DP=81;ExcessHet=0.0000;FS=3.907;MQ=60.00;MQRankSum=0;QD=2.84;ReadPosRankSum=1.534;SOR=1.132;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 1:23,28:51:99:.:145,0:12,11,11,17 0/0:.:43:20:28:0,20,775 +chrX 1621893 . G C 1294 . AC=1;AF=0.333;AN=3;AS_AltDP=41;AS_QD=32.29;DP=75;ExcessHet=0.0000;FS=0.000;MQ=59.84;QD=32.29;SOR=0.843;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,41:41:99:.:1324,0:0,0,19,22 0/0:.:43:20:28:0,20,775 +chrX 1622288 . G A 153 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=3.00;BaseQRankSum=0.738;DP=90;ExcessHet=0.0000;FS=2.130;MQ=59.91;MQRankSum=1.119;QD=3.00;ReadPosRankSum=0.601;SOR=1.022;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 1:28,33:61:99:.:183,0:14,14,14,19 0/0:.:43:20:28:0,20,775 +chrX 1622950 . T A 89 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=1.63;BaseQRankSum=0.769;DP=106;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=1.63;ReadPosRankSum=-1.066;SOR=0.716;VarDP=73 GT:AD:DP:GQ:MIN_DP:PL:SB 1:35,38:73:99:.:119,0:21,14,23,15 0/0:.:43:20:28:0,20,775 +chrX 1623054 . T C 1143 . AC=2;AF=0.667;AN=3;AS_AltDP=77;AS_QD=8.56;BaseQRankSum=0.262;DP=138;ExcessHet=0.0000;FS=1.412;MQ=60.00;MQRankSum=0;QD=8.56;ReadPosRankSum=0.509;SOR=0.545;VarDP=137 GT:AD:DP:GQ:PL:SB 1:32,43:75:99:368,0:20,12,30,13 0/1:28,34:62:99:805,0,739:19,9,17,17 +chrX 1623440 . A T 136 . AC=1;AF=0.333;AN=3;AS_AltDP=39;AS_QD=2.34;BaseQRankSum=-1.687;DP=126;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=2.34;ReadPosRankSum=0.931;SOR=0.607;VarDP=71 GT:AD:DP:GQ:MIN_DP:PL:SB 1:32,39:71:99:.:166,0:18,14,21,18 0/0:.:54:53:54:0,53,1360 +chrX 1623744 . A G 633 . AC=2;AF=0.667;AN=3;AS_AltDP=45;AS_QD=7.45;BaseQRankSum=0.782;DP=96;ExcessHet=0.0000;FS=6.878;MQ=60.00;MQRankSum=0;QD=7.45;ReadPosRankSum=1.897;SOR=0.707;VarDP=89 GT:AD:DP:GQ:PL:SB 1:20,25:45:99:184,0:8,12,12,13 0/1:24,20:44:99:479,0,626:10,14,13,7 +chrX 1624016 . G A 143 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=3.20;BaseQRankSum=-0.349;DP=96;ExcessHet=0.0000;FS=1.054;MQ=60.00;MQRankSum=0;QD=3.20;ReadPosRankSum=-0.732;SOR=0.703;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 1:24,30:54:99:.:173,0:13,11,14,16 0/0:.:48:29:41:0,29,994 +chrX 1625030 . G C 363 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=6.24;BaseQRankSum=2.993;DP=143;ExcessHet=0.0000;FS=3.785;MQ=60.00;MQRankSum=0;QD=6.24;ReadPosRankSum=-1.313;SOR=0.294;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 1:27,36:63:99:.:393,0:7,20,14,22 0/0:.:78:44:78:0,44,1356 +chrX 1625037 . G T 295 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=5.00;BaseQRankSum=2.867;DP=144;ExcessHet=0.0000;FS=7.233;MQ=60.00;MQRankSum=0;QD=5.00;ReadPosRankSum=-1.314;SOR=0.206;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 1:29,36:65:99:.:325,0:7,22,15,21 0/0:.:78:44:78:0,44,1356 +chrX 1625104 . C CTT 142.97 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=3.79;BaseQRankSum=-2.116;DP=128;ExcessHet=0.0000;FS=16.407;MQ=59.09;MQRankSum=-1.672;QD=3.79;ReadPosRankSum=2.354;SOR=0.818;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 1:23,25:48:99:.:182,0:6,17,15,10 0/0:.:78:44:78:0,44,1356 +chrX 1625108 . CT TT,C 703 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=26,27;AS_QD=2.51,7.04;BaseQRankSum=-1.232;DP=120;ExcessHet=0.0000;FS=2.600;MQ=59.48;MQRankSum=0;QD=7.12;ReadPosRankSum=2.199;SOR=0.446;VarDP=103 GT:AD:DP:GQ:PL:SB 1:23,26,0:49:99:191,0,1074:6,17,15,11 0/2:27,0,27:54:99:542,623,1237,0,614,533:13,14,9,18 +chrX 1625260 . A G 904 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=15.83;BaseQRankSum=-1.01;DP=117;ExcessHet=0.0000;FS=2.292;MQ=60.00;MQRankSum=0;QD=15.83;ReadPosRankSum=-0.306;SOR=1.121;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:54:99:54:0,1330 0/1:22,37:59:99:.:934,0,524:11,11,22,15 +chrX 1625528 . A AGAAG 492.97 . AC=1;AF=0.500;AN=2;AS_AltDP=26;AS_QD=10.23;BaseQRankSum=-0.539;DP=67;ExcessHet=0.0000;FS=7.621;MQ=59.86;MQRankSum=0;QD=10.23;ReadPosRankSum=0.526;SOR=0.117;VarDP=52 GT:AD:DP:GQ:PL:SB .:11,11:22:1:1,0:9,2,7,4 0/1:15,15:30:99:531,0,524:14,1,11,4 +chrX 1625551 . A AGGGAGGGAGGGAGGGAAAGGGG 468.97 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=20.32;BaseQRankSum=0.473;DP=86;ExcessHet=0.0000;FS=6.576;MQ=59.71;MQRankSum=-0.881;QD=20.32;ReadPosRankSum=0.899;SOR=2.746;VarDP=25 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:54:99:54:0,762 0/1:12,13:25:99:.:508,0,466:10,2,13,0 +chrX 1625904 . A G 2491 . AC=3;AF=1.00;AN=3;AS_AltDP=78;AS_QD=32.32;DP=82;ExcessHet=0.0000;FS=0.000;MQ=58.79;QD=32.32;SOR=1.108;VarDP=78 GT:AD:DP:GQ:PL:SB 1:0,41:41:99:1307,0:0,0,23,18 1/1:0,37:37:99:1214,111,0:0,0,23,14 +chrX 1625954 . CAA C,CA,CAAAA 1073.97 . AC=1,1,1;AF=0.333,0.333,0.333;AN=3;AS_AltDP=20,17,16;AS_QD=20.00,22.95,19.72;BaseQRankSum=-0.491;DP=94;ExcessHet=0.0000;FS=0.000;MQ=58.77;MQRankSum=-0.136;QD=20.24;ReadPosRankSum=-0.867;SOR=1.077;VarDP=55 GT:AD:DP:GQ:PL:SB 2:2,10,17,0:29:99:436,245,0,475:1,1,16,11 1/3:0,10,0,16:26:99:677,428,645,738,568,886,322,0,379,369:0,0,15,11 +chrX 1626234 . CT C 1054.97 . AC=3;AF=1.00;AN=3;AS_AltDP=52;AS_QD=19.89;BaseQRankSum=-0.701;DP=95;ExcessHet=0.0000;FS=2.589;MQ=59.30;MQRankSum=0;QD=19.89;ReadPosRankSum=-0.428;SOR=1.204;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,22:22:99:491,0:0,0,10,12 1/1:3,30:33:31:603,31,0:2,1,9,21 +chrX 1626407 . G C 4109 . AC=3;AF=1.00;AN=3;AS_AltDP=124;AS_QD=33.38;DP=126;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.38;SOR=1.107;VarDP=124 GT:AD:DP:GQ:PL:SB 1:0,57:57:99:1900,0:0,0,32,25 1/1:0,67:67:99:2239,201,0:0,0,41,26 +chrX 1626819 . C T 4136 . AC=2;AF=0.667;AN=3;AS_AltDP=98;AS_QD=30.97;BaseQRankSum=2.572;DP=102;ExcessHet=0.0000;FS=2.196;MQ=59.84;MQRankSum=3.831;QD=41.25;ReadPosRankSum=0;SOR=0.540;VarDP=101 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,56:56:99:.:.:2449,0:.:0,0,26,30 0|1:3,42:45:0:0|1:1626819_C_T:1717,0,0:1626819:2,1,20,22 +chrX 1626822 . G GT 4258.97 . AC=3;AF=1.00;AN=3;AS_AltDP=102;AS_QD=25.05;BaseQRankSum=1.301;DP=105;ExcessHet=0.0000;FS=2.190;MQ=59.84;MQRankSum=3.917;QD=40.93;ReadPosRankSum=0.022;SOR=0.533;VarDP=105 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,58:58:99:.:.:2516,0:.:0,0,26,32 1|1:3,44:47:6:0|1:1626819_C_T:1782,6,0:1626819:2,1,22,22 +chrX 1626825 . C T 4341 . AC=3;AF=1.00;AN=3;AS_AltDP=100;AS_QD=26.43;BaseQRankSum=-0.586;DP=102;ExcessHet=0.0000;FS=3.231;MQ=59.84;MQRankSum=6.93;QD=43.28;ReadPosRankSum=-0.732;SOR=0.416;VarDP=101 GT:AD:DP:GQ:PL:SB 1:0,54:54:99:2387,0:0,0,24,30 1/1:1,46:47:99:1984,107,0:1,0,23,23 +chrX 1626953 . G C 2402 . AC=3;AF=1.00;AN=3;AS_AltDP=110;AS_QD=16.77;BaseQRankSum=0.219;DP=151;ExcessHet=0.0000;FS=3.585;MQ=59.69;MQRankSum=1.56;QD=16.77;ReadPosRankSum=-0.151;SOR=0.767;VarDP=145 GT:AD:DP:GQ:PL:SB 1:35,41:76:99:219,0:16,19,22,19 1/1:0,69:69:99:2213,207,0:0,0,38,31 +chrX 1627321 . A G 5386 . AC=3;AF=1.00;AN=3;AS_AltDP=125;AS_QD=32.40;BaseQRankSum=-0.658;DP=127;ExcessHet=0.0000;FS=3.295;MQ=58.47;MQRankSum=-0.215;QD=42.98;ReadPosRankSum=-0.878;SOR=0.456;VarDP=126 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,52:52:99:.:.:2298,0:.:0,0,22,30 1|1:1,73:74:99:0|1:1627321_A_G:3118,178,0:1627321:1,0,36,37 +chrX 1627326 . C A 5346 . AC=3;AF=1.00;AN=3;AS_AltDP=124;AS_QD=33.36;BaseQRankSum=-0.417;DP=129;ExcessHet=0.0000;FS=3.153;MQ=58.56;MQRankSum=-0.185;QD=43.01;ReadPosRankSum=-0.941;SOR=0.353;VarDP=125 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,55:55:99:.:.:2376,0:.:0,0,25,29 1|1:1,69:70:99:0|1:1627321_A_G:3000,166,0:1627321:1,0,34,35 +chrX 1627360 . A G 4286 . AC=3;AF=1.00;AN=3;AS_AltDP=141;AS_QD=30.39;BaseQRankSum=-0.647;DP=151;ExcessHet=0.0000;FS=0.000;MQ=58.86;MQRankSum=-0.177;QD=30.39;ReadPosRankSum=-1.003;SOR=0.307;VarDP=142 GT:AD:DP:GQ:PL:SB 1:0,66:66:99:1974,0:0,0,35,31 1/1:1,75:76:99:2342,193,0:1,0,42,33 +chrX 1627633 . C CGAAAT 769.97 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=21.29;BaseQRankSum=-1.799;DP=126;ExcessHet=0.0000;FS=2.742;MQ=60.00;MQRankSum=0;QD=21.29;ReadPosRankSum=-0.705;SOR=0.542;VarDP=38 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:74:53:58:0,53 0/1:17,21:38:99:.:809,0,642:10,7,10,11 +chrX 1627936 . A G 4586 . AC=3;AF=1.00;AN=3;AS_AltDP=147;AS_QD=31.40;DP=151;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.40;SOR=0.792;VarDP=147 GT:AD:DP:GQ:PL:SB 1:0,59:59:99:1844,0:0,0,32,27 1/1:0,88:88:99:2772,263,0:0,0,45,43 +chrX 1627957 . A G 4632 . AC=3;AF=1.00;AN=3;AS_AltDP=145;AS_QD=32.15;DP=150;ExcessHet=0.0000;FS=0.000;MQ=59.92;QD=32.15;SOR=0.854;VarDP=145 GT:AD:DP:GQ:PL:SB 1:0,62:62:99:2013,0:0,0,34,28 1/1:0,83:83:99:2649,248,0:0,0,44,39 +chrX 1628063 . G A 2690 . AC=3;AF=1.00;AN=3;AS_AltDP=109;AS_QD=20.15;BaseQRankSum=-0.171;DP=141;ExcessHet=0.0000;FS=1.785;MQ=59.88;MQRankSum=-0.731;QD=20.15;ReadPosRankSum=0.598;SOR=0.956;VarDP=135 GT:AD:DP:GQ:PL:SB 1:26,35:61:99:293,0:13,13,16,19 1/1:0,74:74:99:2427,222,0:0,0,45,29 +chrX 1628615 . C G 2106 . AC=3;AF=1.00;AN=3;AS_AltDP=69;AS_QD=30.96;DP=72;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.96;SOR=2.015;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:997,0:0,0,7,24 1/1:0,38:38:99:1139,112,0:0,0,12,26 +chrX 1628781 . C T 672 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=7.63;BaseQRankSum=0.405;DP=97;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=7.63;ReadPosRankSum=0.875;SOR=0.681;VarDP=92 GT:AD:DP:GQ:PL:SB 1:22,25:47:99:119,0:7,15,11,14 0/1:23,22:45:99:583,0,551:12,11,9,13 +chrX 1628830 . T TCTC 3839.97 . AC=3;AF=1.00;AN=3;AS_AltDP=88;AS_QD=24.54;BaseQRankSum=-0.583;DP=94;ExcessHet=0.0000;FS=3.059;MQ=60.00;MQRankSum=0;QD=43.58;ReadPosRankSum=1.231;SOR=0.295;VarDP=89 GT:AD:DP:GQ:PL:SB 1:0,51:51:99:2283,0:0,0,24,27 1/1:1,37:38:69:1596,69,0:0,1,21,16 +chrX 1628918 . G A 619 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=12.02;BaseQRankSum=1.025;DP=105;ExcessHet=0.0000;FS=1.040;MQ=60.00;MQRankSum=0;QD=12.02;ReadPosRankSum=-1.709;SOR=0.529;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:49:99:49:0,136 0/1:25,29:54:99:.:649,0,480:15,10,16,13 +chrX 1628942 . CTT C 905.97 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=18.17;BaseQRankSum=1.14;DP=113;ExcessHet=0.0000;FS=1.077;MQ=60.00;MQRankSum=0;QD=18.17;ReadPosRankSum=-0.049;SOR=0.844;VarDP=52 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:49:99:49:.:.:0,136 0|1:23,29:52:99:.:0|1:1628942_CTT_C:945,0,863:1628942:12,11,13,16 +chrX 1628944 . T C,* 2459 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=48,32;AS_QD=22.67,0.00;DP=110;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=29.63;SOR=0.850;VarDP=84 GT:AD:DP:GQ:PL:SB 1:4,26,0:30:99:591,0,832:0,0,11,15 1/2:0,22,32:54:99:1898,1310,1443,629,0,813:0,0,26,28 +chrX 1628947 . TTTCTTTCC *,T 1200.97 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=0,29;AS_QD=0.00,23.85;BaseQRankSum=0.028;DP=110;ExcessHet=0.0000;FS=1.077;MQ=60.00;MQRankSum=0;QD=23.85;ReadPosRankSum=1.115;SOR=0.844;VarDP=52 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:50:99:50:.:.:0,312,312 0|2:23,0,29:52:99:.:0|1:1628942_CTT_C:1240,1085,2135,0,937,854:1628942:12,11,13,16 +chrX 1629036 . C T 145 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=3.24;BaseQRankSum=-0.751;DP=119;ExcessHet=0.0000;FS=1.079;MQ=60.00;MQRankSum=0;QD=3.24;ReadPosRankSum=-1.406;SOR=0.941;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 1:25,29:54:99:.:175,0:10,15,10,19 0/0:.:62:95:62:0,95,1233 +chrX 1629038 . C T 145 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=3.24;BaseQRankSum=-0.982;DP=120;ExcessHet=0.0000;FS=1.079;MQ=60.00;MQRankSum=0;QD=3.24;ReadPosRankSum=-1.371;SOR=0.941;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 1:25,29:54:99:.:175,0:10,15,10,19 0/0:.:62:95:62:0,95,1233 +chrX 1629082 . TTA T 3629.97 . AC=3;AF=1.00;AN=3;AS_AltDP=98;AS_QD=27.14;DP=125;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=37.06;SOR=0.317;VarDP=99 GT:AD:DP:GQ:PL:SB 1:0,49:49:99:1840,0:0,0,24,25 1/1:1,49:50:99:1829,119,0:0,1,20,29 +chrX 1629312 . G C 693 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=11.12;BaseQRankSum=1.289;DP=135;ExcessHet=0.0000;FS=11.109;MQ=60.00;MQRankSum=0;QD=11.12;ReadPosRankSum=-0.839;SOR=1.425;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:95:67:0,95 0/1:38,27:65:99:.:723,0,1040:16,22,18,9 +chrX 1629381 . C T 517 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=10.73;BaseQRankSum=-0.08;DP=122;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=10.73;ReadPosRankSum=-0.536;SOR=0.656;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:95:67:0,95 0/1:30,21:51:99:.:547,0,849:14,16,10,11 +chrX 1629555 . C A 318 . AC=1;AF=0.333;AN=3;AS_AltDP=41;AS_QD=4.90;BaseQRankSum=-0.016;DP=133;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=4.90;ReadPosRankSum=0.53;SOR=0.741;VarDP=71 GT:AD:DP:GQ:MIN_DP:PL:SB 1:30,41:71:99:.:348,0:15,15,20,21 0/0:.:60:99:60:0,120,1552 +chrX 1629688 . A C 2862 . AC=2;AF=0.667;AN=3;AS_AltDP=92;AS_QD=24.30;BaseQRankSum=-2.302;DP=125;ExcessHet=0.0000;FS=2.882;MQ=60.00;MQRankSum=0;QD=24.30;ReadPosRankSum=0.602;SOR=0.433;VarDP=119 GT:AD:DP:GQ:PL:SB 1:0,59:59:99:1985,0:0,0,31,28 0/1:27,33:60:99:907,0,758:16,11,16,17 +chrX 1630017 . T C 929 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=8.34;BaseQRankSum=-0.245;DP=123;ExcessHet=0.0000;FS=8.647;MQ=59.94;MQRankSum=0;QD=8.34;ReadPosRankSum=-0.152;SOR=1.028;VarDP=115 GT:AD:DP:GQ:PL:SB 1:21,28:49:99:209,0:10,11,12,16 0/1:37,29:66:99:750,0,983:22,15,11,18 +chrX 1630144 . C CT 658.97 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=6.78;BaseQRankSum=1.264;DP=130;ExcessHet=0.0000;FS=1.621;MQ=60.00;MQRankSum=0;QD=6.78;ReadPosRankSum=0.585;SOR=0.523;VarDP=103 GT:AD:DP:GQ:PL:SB 1:21,25:46:99:121,0:13,8,14,11 0/1:31,26:57:99:577,0,755:20,11,16,10 +chrX 1630195 . A G 1070 . AC=1;AF=0.333;AN=3;AS_AltDP=40;AS_QD=18.33;BaseQRankSum=-1.53;DP=114;ExcessHet=0.0000;FS=0.000;MQ=59.94;MQRankSum=-0.672;QD=18.33;ReadPosRankSum=-1.114;SOR=0.693;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:50:99:50:0,193 0/1:20,40:60:99:.:1100,0,506:10,10,20,20 +chrX 1630300 . A ATTT 1374.97 . AC=3;AF=1.00;AN=3;AS_AltDP=41;AS_QD=34.49;DP=92;ExcessHet=0.0000;FS=0.000;MQ=57.18;QD=34.49;SOR=0.741;VarDP=41 GT:AD:DP:GQ:PL:SB 1:0,17:17:99:571,0:0,0,9,8 1/1:0,24:24:72:843,72,0:0,0,12,12 +chrX 1630383 . G A 365 . AC=1;AF=0.500;AN=2;AS_AltDP=17;AS_QD=10.13;BaseQRankSum=-0.501;DP=82;ExcessHet=0.0000;FS=5.498;MQ=60.00;MQRankSum=0;QD=10.13;ReadPosRankSum=-0.241;SOR=0.185;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB .:.:41:0:41:0,0 0/1:22,17:39:99:.:395,0,582:4,18,6,11 +chrX 1630871 . T TTTTA 2713.97 . AC=3;AF=1.00;AN=3;AS_AltDP=62;AS_QD=27.31;DP=97;ExcessHet=0.0000;FS=0.000;MQ=59.85;QD=44.40;SOR=1.234;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,34:34:99:1517,0:0,0,12,22 1/1:0,28:28:84:1236,84,0:0,0,12,16 +chrX 1630921 . T A 1213 . AC=2;AF=0.667;AN=3;AS_AltDP=38;AS_QD=32.71;DP=94;ExcessHet=0.0000;FS=0.000;MQ=59.88;QD=32.71;SOR=1.329;VarDP=38 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:55:99:55:0,189 1/1:0,38:38:99:.:1243,114,0:0,0,24,14 +chrX 1631068 . G A 487 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=10.77;BaseQRankSum=1.885;DP=106;ExcessHet=0.0000;FS=1.129;MQ=58.10;MQRankSum=0.29;QD=10.77;ReadPosRankSum=1.161;SOR=0.955;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:55:99:55:0,189 0/1:28,20:48:99:.:517,0,714:15,13,12,8 +chrX 1631084 . GT G 517.97 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=13.59;BaseQRankSum=-0.564;DP=105;ExcessHet=0.0000;FS=2.700;MQ=58.74;MQRankSum=-0.264;QD=13.59;ReadPosRankSum=-0.664;SOR=0.982;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:55:99:55:0,189 0/1:17,24:41:99:.:557,0,351:8,9,14,10 +chrX 1631167 . G A 993 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=9.05;BaseQRankSum=1.191;DP=118;ExcessHet=0.0000;FS=12.223;MQ=60.00;MQRankSum=0;QD=9.05;ReadPosRankSum=-0.632;SOR=0.915;VarDP=113 GT:AD:DP:GQ:PL:SB 1:26,34:60:99:298,0:17,9,18,16 0/1:26,27:53:99:725,0,655:14,12,7,20 +chrX 1631199 . C G 596 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=12.27;BaseQRankSum=-0.224;DP=115;ExcessHet=0.0000;FS=7.843;MQ=60.00;MQRankSum=0;QD=12.27;ReadPosRankSum=-0.406;SOR=0.494;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,208 0/1:27,24:51:99:.:626,0,746:9,18,13,11 +chrX 1631417 . C T 650 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=13.33;BaseQRankSum=1.951;DP=117;ExcessHet=0.0000;FS=1.101;MQ=60.00;MQRankSum=0;QD=13.33;ReadPosRankSum=0.556;SOR=0.503;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,208 0/1:26,25:51:99:.:680,0,656:9,17,10,15 +chrX 1631644 . G A 848 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=16.57;BaseQRankSum=-0.447;DP=121;ExcessHet=0.0000;FS=2.482;MQ=59.88;MQRankSum=-0.772;QD=16.57;ReadPosRankSum=-0.418;SOR=0.405;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,208 0/1:21,32:53:99:.:878,0,539:15,6,20,12 +chrX 1631845 . T C 3695 . AC=3;AF=1.00;AN=3;AS_AltDP=118;AS_QD=31.57;DP=120;ExcessHet=0.0000;FS=0.000;MQ=59.73;QD=31.57;SOR=0.727;VarDP=118 GT:AD:DP:GQ:PL:SB 1:0,69:69:99:2198,0:0,0,41,28 1/1:0,49:49:99:1527,145,0:0,0,19,30 +chrX 1631915 . A G 496 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=13.84;BaseQRankSum=-1.95;DP=111;ExcessHet=0.0000;FS=0.000;MQ=59.90;MQRankSum=0;QD=13.84;ReadPosRankSum=1.082;SOR=0.892;VarDP=38 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:71:14:71:0,14 0/1:18,20:38:99:.:526,0,511:9,9,9,11 +chrX 1632389 . C T 679 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=6.50;BaseQRankSum=0.92;DP=112;ExcessHet=0.0000;FS=0.711;MQ=59.90;MQRankSum=-0.914;QD=6.50;ReadPosRankSum=0.491;SOR=0.602;VarDP=109 GT:AD:DP:GQ:PL:SB 1:27,30:57:99:130,0:15,12,16,14 0/1:30,22:52:99:579,0,801:16,14,11,11 +chrX 1632518 . G C 592 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=11.52;BaseQRankSum=-0.606;DP=117;ExcessHet=0.0000;FS=0.000;MQ=59.68;MQRankSum=-1.879;QD=11.52;ReadPosRankSum=-1.996;SOR=0.703;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,1499 0/1:29,25:54:99:.:622,0,771:14,15,12,13 +chrX 1632709 . T C 3930 . AC=3;AF=1.00;AN=3;AS_AltDP=122;AS_QD=32.46;DP=126;ExcessHet=0.0000;FS=0.000;MQ=59.77;QD=32.46;SOR=0.795;VarDP=122 GT:AD:DP:GQ:PL:SB 1:0,68:68:99:2223,0:0,0,40,28 1/1:0,54:54:99:1737,162,0:0,0,24,30 +chrX 1632812 . A G 593 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=5.15;BaseQRankSum=0.689;DP=124;ExcessHet=0.0000;FS=0.000;MQ=59.81;MQRankSum=1.525;QD=5.15;ReadPosRankSum=0.211;SOR=0.668;VarDP=121 GT:AD:DP:GQ:PL:SB 1:34,38:72:25:25,0:22,12,21,17 0/1:27,22:49:99:598,0,721:17,10,17,5 +chrX 1632831 . C T 574 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=5.30;BaseQRankSum=2.413;DP=115;ExcessHet=0.0000;FS=3.517;MQ=59.95;MQRankSum=1.078;QD=5.30;ReadPosRankSum=0.295;SOR=0.430;VarDP=114 GT:AD:DP:GQ:PL:SB 1:31,34:65:75:75,0:20,11,16,18 0/1:29,20:49:99:529,0,750:19,10,15,5 +chrX 1633016 . GA G 3572.97 . AC=3;AF=1.00;AN=3;AS_AltDP=119;AS_QD=30.35;DP=128;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.35;SOR=0.744;VarDP=119 GT:AD:DP:GQ:PL:SB 1:0,71:71:99:2148,0:0,0,39,32 1/1:0,48:48:99:1464,144,0:0,0,19,29 +chrX 1633124 . G T 44 . AC=1;AF=0.333;AN=3;AS_AltDP=40;AS_QD=0.95;BaseQRankSum=0.614;DP=145;ExcessHet=0.0000;FS=1.883;MQ=60.00;MQRankSum=0;QD=0.949;ReadPosRankSum=0.85;SOR=1.019;VarDP=78 GT:AD:DP:GQ:MIN_DP:PL:SB 1:38,40:78:74:.:74,0:18,20,16,24 0/0:.:62:64:62:0,64,1306 +chrX 1633642 . A ATTTT 1014.97 . AC=2;AF=0.667;AN=3;AS_AltDP=42;AS_QD=15.50;BaseQRankSum=0.697;DP=105;ExcessHet=0.0000;FS=0.000;MQ=59.08;MQRankSum=-1.107;QD=15.50;ReadPosRankSum=-0.657;SOR=0.642;VarDP=68 GT:AD:DP:GQ:PL:SB 1:15,25:40:99:413,0:7,8,12,13 0/1:11,17:28:99:641,0,390:5,6,8,9 +chrX 1633683 . G A 534 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=15.24;BaseQRankSum=2.024;DP=103;ExcessHet=0.0000;FS=1.271;MQ=60.00;MQRankSum=0;QD=15.24;ReadPosRankSum=0.366;SOR=0.990;VarDP=37 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:59:62:0,59 0/1:17,20:37:99:.:564,0,415:8,9,8,12 +chrX 1633756 . A G 615 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=13.44;BaseQRankSum=0.541;DP=113;ExcessHet=0.0000;FS=0.000;MQ=59.20;MQRankSum=1.001;QD=13.44;ReadPosRankSum=0;SOR=0.711;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:59:62:0,59 0/1:25,23:48:99:.:645,0,694:11,14,10,13 +chrX 1633930 . A G 904 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=14.59;BaseQRankSum=-1.195;DP=129;ExcessHet=0.0000;FS=2.124;MQ=60.00;MQRankSum=0;QD=14.59;ReadPosRankSum=-0.925;SOR=0.704;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:59:62:0,59 0/1:27,37:64:99:.:934,0,687:12,15,20,17 +chrX 1634225 . G A 1022 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=14.82;BaseQRankSum=2.474;DP=135;ExcessHet=0.0000;FS=0.895;MQ=60.00;MQRankSum=0;QD=14.82;ReadPosRankSum=-0.53;SOR=0.850;VarDP=71 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:59:62:0,59 0/1:34,37:71:99:.:1052,0,849:18,16,21,16 +chrX 1634414 . A G 949 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=14.19;BaseQRankSum=1.445;DP=134;ExcessHet=0.0000;FS=4.697;MQ=60.00;MQRankSum=0;QD=14.19;ReadPosRankSum=0.264;SOR=0.860;VarDP=69 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:59:62:0,59 0/1:34,35:69:99:.:979,0,890:19,15,15,20 +chrX 1634653 . A AC 493.97 . AC=2;AF=0.667;AN=3;AS_AltDP=48;AS_QD=4.94;BaseQRankSum=1.118;DP=129;ExcessHet=0.0000;FS=7.497;MQ=59.90;MQRankSum=0;QD=4.94;ReadPosRankSum=1.175;SOR=1.106;VarDP=108 GT:AD:DP:GQ:PL:SB 1:21,24:45:75:75,0:8,13,14,10 0/1:39,24:63:99:458,0,910:20,19,15,9 +chrX 1634726 . G A 656 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=14.91;BaseQRankSum=-0.653;DP=94;ExcessHet=0.0000;FS=1.182;MQ=59.51;MQRankSum=-0.795;QD=14.91;ReadPosRankSum=-0.246;SOR=0.512;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:45:99:45:0,133 0/1:19,27:46:99:.:686,0,458:6,13,10,17 +chrX 1634884 . T C 767 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=11.90;BaseQRankSum=-2.017;DP=116;ExcessHet=0.0000;FS=4.853;MQ=60.00;MQRankSum=0;QD=11.90;ReadPosRankSum=0.71;SOR=0.404;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:45:99:45:0,133 0/1:32,35:67:99:.:797,0,853:12,20,18,17 +chrX 1634976 . C CT 291.97 . AC=1;AF=0.333;AN=3;AS_AltDP=10;AS_QD=13.24;BaseQRankSum=0.295;DP=85;ExcessHet=0.0000;FS=1.569;MQ=59.27;MQRankSum=-1.143;QD=13.24;ReadPosRankSum=0.945;SOR=0.399;VarDP=25 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:45:99:45:.:.:0,133 0|1:15,10:25:99:.:0|1:1634976_C_CT:331,0,600:1634976:9,6,5,5 +chrX 1634993 . G C 289 . AC=1;AF=0.333;AN=3;AS_AltDP=10;AS_QD=11.00;BaseQRankSum=0.482;DP=77;ExcessHet=0.0000;FS=0.000;MQ=58.65;MQRankSum=0;QD=11.00;ReadPosRankSum=0.515;SOR=0.602;VarDP=29 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:45:99:45:.:.:0,133 0|1:19,10:29:99:.:0|1:1634976_C_CT:319,0,768:1634976:9,10,5,5 +chrX 1634997 . T C 224 . AC=1;AF=0.333;AN=3;AS_AltDP=8;AS_QD=9.07;BaseQRankSum=1.694;DP=73;ExcessHet=0.0000;FS=0.000;MQ=58.90;MQRankSum=-0.237;QD=9.07;ReadPosRankSum=0.145;SOR=0.941;VarDP=28 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:45:99:45:.:.:0,133 0|1:20,8:28:99:.:0|1:1634976_C_CT:254,0,816:1634976:9,11,3,5 +chrX 1635006 . G A 252 . AC=1;AF=0.333;AN=3;AS_AltDP=8;AS_QD=10.85;BaseQRankSum=1.815;DP=71;ExcessHet=0.0000;FS=0.000;MQ=57.01;MQRankSum=-1.175;QD=10.85;ReadPosRankSum=-0.078;SOR=0.502;VarDP=26 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:45:99:45:.:.:0,133 0|1:18,8:26:99:.:0|1:1634976_C_CT:282,0,732:1634976:6,12,3,5 +chrX 1635014 . A G 219 . AC=1;AF=0.333;AN=3;AS_AltDP=7;AS_QD=11.32;BaseQRankSum=-1.544;DP=67;ExcessHet=0.0000;FS=0.000;MQ=55.82;MQRankSum=-1.925;QD=11.32;ReadPosRankSum=-1.626;SOR=0.784;VarDP=22 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:45:99:45:.:.:0,133 0|1:15,7:22:99:.:0|1:1634976_C_CT:249,0,609:1634976:5,10,2,5 +chrX 1635024 . G A 216 . AC=1;AF=0.333;AN=3;AS_AltDP=7;AS_QD=10.70;BaseQRankSum=-0.864;DP=68;ExcessHet=0.0000;FS=0.000;MQ=56.01;MQRankSum=-2.006;QD=10.70;ReadPosRankSum=-1.906;SOR=0.693;VarDP=23 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:45:99:45:.:.:0,133 0|1:16,7:23:99:.:0|1:1634976_C_CT:246,0,651:1634976:5,11,2,5 +chrX 1635035 . T C 345 . AC=1;AF=0.333;AN=3;AS_AltDP=10;AS_QD=15.00;BaseQRankSum=0.698;DP=70;ExcessHet=0.0000;FS=3.544;MQ=55.19;MQRankSum=-2.821;QD=15.00;ReadPosRankSum=-3.052;SOR=0.260;VarDP=25 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:45:99:45:.:.:0,133 0|1:15,10:25:99:.:0|1:1634976_C_CT:375,0,600:1634976:5,10,5,5 +chrX 1635037 . G T 345 . AC=1;AF=0.333;AN=3;AS_AltDP=10;AS_QD=15.00;BaseQRankSum=0.12;DP=70;ExcessHet=0.0000;FS=3.544;MQ=55.19;MQRankSum=-2.821;QD=15.00;ReadPosRankSum=-3.082;SOR=0.260;VarDP=25 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:45:99:45:.:.:0,133 0|1:15,10:25:99:.:0|1:1634976_C_CT:375,0,600:1634976:5,10,5,5 +chrX 1635124 . A G 580 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=14.88;BaseQRankSum=-1.309;DP=86;ExcessHet=0.0000;FS=2.680;MQ=54.51;MQRankSum=-1.795;QD=14.88;ReadPosRankSum=2.888;SOR=0.385;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:45:99:45:0,133 0/1:16,25:41:99:.:610,0,389:6,10,12,13 +chrX 1635141 . A AT 128.97 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=4.54;BaseQRankSum=1.983;DP=94;ExcessHet=0.0000;FS=3.053;MQ=55.40;MQRankSum=1.08;QD=4.54;ReadPosRankSum=-0.292;SOR=0.883;VarDP=37 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:45:99:45:0,133 0/1:25,12:37:99:.:168,0,495:11,14,7,5 +chrX 1635276 . G A 660 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=7.11;BaseQRankSum=2.108;DP=100;ExcessHet=0.0000;FS=3.779;MQ=59.31;MQRankSum=0.095;QD=7.11;ReadPosRankSum=-0.542;SOR=0.484;VarDP=97 GT:AD:DP:GQ:PL:SB 1:22,23:45:51:51,0:9,13,13,10 0/1:28,24:52:99:639,0,667:12,16,11,13 +chrX 1635963 . C CTTTT 635.97 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=13.50;BaseQRankSum=-0.38;DP=126;ExcessHet=0.0000;FS=2.517;MQ=59.91;MQRankSum=0.857;QD=13.50;ReadPosRankSum=-0.03;SOR=1.219;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,1122 0/1:30,20:50:99:.:675,0,1135:16,14,13,7 +chrX 1636056 . T C 227 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=7.34;BaseQRankSum=-0.806;DP=97;ExcessHet=0.0000;FS=1.501;MQ=60.00;MQRankSum=0;QD=7.34;ReadPosRankSum=-0.835;SOR=0.323;VarDP=35 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,1122 0/1:24,11:35:99:.:257,0,709:8,16,5,6 +chrX 1636567 . TG T 1167.97 . AC=2;AF=0.667;AN=3;AS_AltDP=64;AS_QD=10.32;BaseQRankSum=2.318;DP=124;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=10.32;ReadPosRankSum=0.663;SOR=0.744;VarDP=117 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:30,36:66:99:.:.:236,0:.:11,19,16,20 0|1:23,28:51:99:0|1:1636567_TG_T:971,0,737:1636567:12,11,11,17 +chrX 1636913 . C G 453 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=10.98;BaseQRankSum=1.206;DP=45;ExcessHet=0.0000;FS=4.300;MQ=57.94;MQRankSum=1.35;QD=10.98;ReadPosRankSum=-1.707;SOR=1.254;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:2:35:1:0,35 0/1:25,19:44:99:.:483,0,627:13,12,7,12 +chrX 1637089 . A G 200 . AC=2;AF=0.667;AN=3;AS_AltDP=6;AS_QD=33.78;DP=7;ExcessHet=0.0000;FS=0.000;MQ=42.61;QD=38.33;SOR=1.329;VarDP=6 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:2:35:1:.:.:0,35 1|1:0,6:6:18:.:0|1:1637089_A_G:230,18,0:1637089:0,0,2,4 +chrX 1637094 . T C 175 . AC=2;AF=0.667;AN=3;AS_AltDP=5;AS_QD=30.52;DP=6;ExcessHet=0.0000;FS=0.000;MQ=45.73;QD=41.00;SOR=1.981;VarDP=5 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:2:35:1:.:.:0,35 1|1:0,5:5:15:.:0|1:1637089_A_G:205,15,0:1637089:0,0,1,4 +chrX 1637095 . G A 140 . AC=2;AF=0.667;AN=3;AS_AltDP=4;AS_QD=30.26;DP=5;ExcessHet=0.0000;FS=0.000;MQ=46.38;QD=42.50;SOR=3.258;VarDP=4 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:2:35:1:.:.:0,35 1|1:0,4:4:12:.:0|1:1637089_A_G:170,12,0:1637089:0,0,0,4 +chrX 1638617 . C T 69 . AC=1;AF=1.00;AN=1;AS_AltDP=4;AS_QD=24.75;DP=4;ExcessHet=0.0000;FS=0.000;MQ=43.04;QD=24.75;SOR=0.693;VarDP=4 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,4:4:99:.:99,0:0,0,2,2 ./.:.:0:0:0:0,0,0 +chrX 1639386 . A T 60 . AC=2;AF=0.667;AN=3;AS_AltDP=2;AS_QD=34.74;DP=3;ExcessHet=0.0000;FS=0.000;MQ=34.53;QD=45.00;SOR=2.303;VarDP=2 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:1:35:1:.:.:0,35 1|1:0,2:2:6:.:0|1:1639386_A_T:90,6,0:1639386:0,0,2,0 +chrX 1639390 . A G 60 . AC=2;AF=0.667;AN=3;AS_AltDP=2;AS_QD=29.71;DP=3;ExcessHet=0.0000;FS=0.000;MQ=34.53;QD=45.00;SOR=2.303;VarDP=2 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:1:35:1:.:.:0,35 1|1:0,2:2:6:.:0|1:1639386_A_T:90,6,0:1639386:0,0,2,0 +chrX 1639396 . T A 60 . AC=2;AF=0.667;AN=3;AS_AltDP=2;AS_QD=27.16;DP=3;ExcessHet=0.0000;FS=0.000;MQ=34.53;QD=45.00;SOR=2.303;VarDP=2 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:1:35:1:.:.:0,35 1|1:0,2:2:6:.:0|1:1639386_A_T:90,6,0:1639386:0,0,2,0 +chrX 1640596 . T C 229 . AC=1;AF=0.333;AN=3;AS_AltDP=10;AS_QD=19.92;BaseQRankSum=0.31;DP=45;ExcessHet=0.0000;FS=0.000;MQ=42.33;MQRankSum=-0.597;QD=19.92;ReadPosRankSum=-1.608;SOR=0.446;VarDP=13 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:31:59:31:.:.:0,59 0|1:3,10:13:90:.:1|0:1640568_A_G:259,0,90:1640568:3,0,8,2 +chrX 1640898 . A G 176 . AC=1;AF=0.333;AN=3;AS_AltDP=7;AS_QD=22.89;BaseQRankSum=-0.282;DP=10;ExcessHet=0.0000;FS=0.000;MQ=38.88;MQRankSum=-0.812;QD=22.89;ReadPosRankSum=-1.593;SOR=2.093;VarDP=9 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:3:25:1:0,25 0/1:2,7:9:42:.:206,0,42:2,0,7,0 +chrX 1641362 . T A 108 . AC=2;AF=0.667;AN=3;AS_AltDP=4;AS_QD=34.50;DP=68;ExcessHet=0.0000;FS=0.000;MQ=49.33;QD=34.50;SOR=0.693;VarDP=4 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:84:64:0,84 1/1:0,4:4:12:.:138,12,0:0,0,2,2 +chrX 1641421 . T C 163 . AC=1;AF=0.333;AN=3;AS_AltDP=10;AS_QD=7.72;BaseQRankSum=-1.087;DP=89;ExcessHet=0.0000;FS=1.623;MQ=57.65;MQRankSum=1.523;QD=7.72;ReadPosRankSum=0.083;SOR=1.012;VarDP=25 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:84:64:0,84 0/1:15,10:25:99:.:193,0,397:8,7,4,6 +chrX 1641500 . G A 566 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=11.69;BaseQRankSum=-1.017;DP=117;ExcessHet=0.0000;FS=2.388;MQ=59.78;MQRankSum=1.02;QD=11.69;ReadPosRankSum=-0.434;SOR=1.136;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:84:64:0,84 0/1:26,25:51:99:.:596,0,677:13,13,15,10 +chrX 1641970 . G A 441 . AC=1;AF=0.333;AN=3;AS_AltDP=41;AS_QD=6.83;BaseQRankSum=-0.803;DP=100;ExcessHet=0.0000;FS=3.279;MQ=58.96;MQRankSum=0.407;QD=6.83;ReadPosRankSum=-1.583;SOR=0.859;VarDP=69 GT:AD:DP:GQ:MIN_DP:PL:SB 1:28,41:69:99:.:471,0:15,13,18,23 0/0:.:54:25:27:0,25,659 +chrX 1641981 . C CT 394.97 . AC=1;AF=0.333;AN=3;AS_AltDP=40;AS_QD=6.29;BaseQRankSum=2.176;DP=97;ExcessHet=0.0000;FS=3.243;MQ=58.92;MQRankSum=0.345;QD=6.29;ReadPosRankSum=-1.668;SOR=0.977;VarDP=69 GT:AD:DP:GQ:MIN_DP:PL:SB 1:29,40:69:99:.:434,0:15,14,17,23 0/0:.:54:25:27:0,25,659 +chrX 1642149 . C T 163 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=3.22;BaseQRankSum=1.363;DP=90;ExcessHet=0.0000;FS=5.062;MQ=59.12;MQRankSum=0.119;QD=3.22;ReadPosRankSum=0.66;SOR=0.537;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 1:28,32:60:99:.:193,0:11,17,17,15 0/0:.:54:25:27:0,25,659 +chrX 1642309 . A G 129 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=3.12;BaseQRankSum=1.329;DP=81;ExcessHet=0.0000;FS=0.000;MQ=59.53;MQRankSum=-0.904;QD=3.12;ReadPosRankSum=1.444;SOR=0.596;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 1:24,27:51:99:.:159,0:14,10,15,12 0/0:.:54:25:27:0,25,659 +chrX 1642661 . G C 680 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=12.91;BaseQRankSum=1.238;DP=108;ExcessHet=0.0000;FS=3.749;MQ=60.00;MQRankSum=0;QD=12.91;ReadPosRankSum=-0.244;SOR=1.020;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:49:52:0,49 0/1:28,27:55:99:.:710,0,674:13,15,16,11 +chrX 1643460 . C T 950 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=13.61;BaseQRankSum=1.71;DP=127;ExcessHet=0.0000;FS=9.744;MQ=60.00;MQRankSum=0;QD=13.61;ReadPosRankSum=-0.947;SOR=1.193;VarDP=72 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:49:52:0,49 0/1:37,35:72:99:.:980,0,984:16,21,22,13 +chrX 1643665 . A G 1051 . AC=2;AF=0.667;AN=3;AS_AltDP=70;AS_QD=8.01;BaseQRankSum=1.464;DP=139;ExcessHet=0.0000;FS=0.644;MQ=60.00;MQRankSum=0;QD=8.01;ReadPosRankSum=-0.894;SOR=0.633;VarDP=135 GT:AD:DP:GQ:PL:SB 1:34,38:72:99:188,0:13,21,17,21 0/1:31,32:63:99:893,0,803:12,19,11,21 +chrX 1643667 . T C 158 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=2.61;BaseQRankSum=-3.076;DP=136;ExcessHet=0.0000;FS=1.960;MQ=60.00;MQRankSum=0;QD=2.61;ReadPosRankSum=-1.049;SOR=0.473;VarDP=72 GT:AD:DP:GQ:MIN_DP:PL:SB 1:34,38:72:99:.:188,0:13,21,17,21 0/0:.:63:99:63:0,118,1713 +chrX 1643753 . G T 309 . AC=1;AF=0.333;AN=3;AS_AltDP=46;AS_QD=4.08;BaseQRankSum=1.059;DP=147;ExcessHet=0.0000;FS=4.208;MQ=60.00;MQRankSum=0;QD=4.08;ReadPosRankSum=1.43;SOR=0.690;VarDP=83 GT:AD:DP:GQ:MIN_DP:PL:SB 1:37,46:83:99:.:339,0:16,21,25,21 0/0:.:63:99:63:0,118,1713 +chrX 1643914 . A C 331 . AC=1;AF=0.333;AN=3;AS_AltDP=39;AS_QD=5.39;BaseQRankSum=-0.561;DP=134;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=5.39;ReadPosRankSum=-2.422;SOR=0.743;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 1:28,39:67:99:.:361,0:14,14,19,20 0/0:.:63:99:63:0,118,1713 +chrX 1643996 . C T 801 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=12.98;BaseQRankSum=0.759;DP=132;ExcessHet=0.0000;FS=8.790;MQ=60.00;MQRankSum=0;QD=12.98;ReadPosRankSum=-0.525;SOR=0.933;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:99:66:0,1800 0/1:34,30:64:99:.:831,0,920:21,13,12,18 +chrX 1644058 . A C 143 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=2.88;BaseQRankSum=-1.379;DP=123;ExcessHet=0.0000;FS=2.191;MQ=60.00;MQRankSum=0;QD=2.88;ReadPosRankSum=-0.55;SOR=0.974;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 1:27,33:60:99:.:173,0:14,13,14,19 0/0:.:61:48:61:0,48,1800 +chrX 1644219 . T TTTATTA,TTTATTATTA 1533.97 . AC=0,2;AF=0.00,0.667;AN=3;AS_AltDP=0,34;AS_QD=34.00,31.06;DP=134;ExcessHet=0.0000;FS=0.000;MQ=59.80;QD=46.26;SOR=1.085;VarDP=34 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:99:66:0,238,238 2/2:0,0,34:34:99:.:1573,1361,1289,106,101,0:0,0,14,20 +chrX 1644389 . T C 566 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=11.69;BaseQRankSum=-1.477;DP=115;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=11.69;ReadPosRankSum=-0.104;SOR=0.807;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:5:64:0,5 0/1:28,23:51:99:.:596,0,800:15,13,13,10 +chrX 1645139 . A AT 31.97 . AC=1;AF=0.333;AN=3;AS_AltDP=5;AS_QD=7.10;BaseQRankSum=0.589;DP=94;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=7.10;ReadPosRankSum=-0.7;SOR=0.693;VarDP=10 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:70:99:70:0,466 0/1:5,5:10:71:.:71,0,72:3,2,3,2 +chrX 1645165 . C T 115 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=3.63;BaseQRankSum=1.078;DP=91;ExcessHet=0.0000;FS=4.789;MQ=58.88;MQRankSum=-0.854;QD=3.63;ReadPosRankSum=-0.705;SOR=0.228;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 1:18,22:40:99:.:145,0:5,13,10,12 0/0:.:50:43:50:0,43,843 +chrX 1645403 . TTG T 340.97 . AC=2;AF=0.667;AN=3;AS_AltDP=37;AS_QD=4.32;BaseQRankSum=2.041;DP=100;ExcessHet=0.0000;FS=1.756;MQ=59.46;MQRankSum=0.65;QD=4.32;ReadPosRankSum=0.574;SOR=0.937;VarDP=88 GT:AD:DP:GQ:PL:SB 1:20,26:46:99:154,0:8,12,14,12 0/1:31,11:42:99:226,0,1101:18,13,7,4 +chrX 1645493 . T C 677 . AC=2;AF=0.667;AN=3;AS_AltDP=39;AS_QD=9.18;BaseQRankSum=1.047;DP=81;ExcessHet=0.0000;FS=3.046;MQ=59.60;MQRankSum=0;QD=9.18;ReadPosRankSum=1.394;SOR=1.096;VarDP=77 GT:AD:DP:GQ:PL:SB 1:13,19:32:99:178,0:8,5,11,8 0/1:25,20:45:99:529,0,664:11,14,12,8 +chrX 1645685 . A G 601 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=11.27;BaseQRankSum=1.507;DP=112;ExcessHet=0.0000;FS=3.847;MQ=59.71;MQRankSum=-1.119;QD=11.27;ReadPosRankSum=-0.522;SOR=1.340;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:45:54:0,45 0/1:32,24:56:99:.:631,0,864:15,17,8,16 +chrX 1646081 . G C 1752 . AC=3;AF=1.00;AN=3;AS_AltDP=85;AS_QD=15.77;BaseQRankSum=0.841;DP=114;ExcessHet=0.0000;FS=5.545;MQ=60.00;MQRankSum=0;QD=15.77;ReadPosRankSum=-0.623;SOR=1.020;VarDP=113 GT:AD:DP:GQ:PL:SB 1:28,38:66:99:344,0:13,15,20,18 1/1:0,47:47:99:1438,140,0:0,0,30,17 +chrX 1646213 . T TC 612.97 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=12.07;BaseQRankSum=0.55;DP=128;ExcessHet=0.0000;FS=4.032;MQ=60.00;MQRankSum=0;QD=12.07;ReadPosRankSum=0.113;SOR=1.372;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:69:99:69:0,1440 0/1:29,25:54:99:.:652,0,806:17,12,18,7 +chrX 1646312 . T C 658 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=13.23;BaseQRankSum=0.162;DP=125;ExcessHet=0.0000;FS=5.881;MQ=60.00;MQRankSum=0;QD=13.23;ReadPosRankSum=0.778;SOR=0.202;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:69:5:69:0,5 0/1:26,26:52:99:.:688,0,657:18,8,13,13 +chrX 1646442 . T C 902 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=15.28;BaseQRankSum=-0.434;DP=126;ExcessHet=0.0000;FS=2.211;MQ=60.00;MQRankSum=0;QD=15.28;ReadPosRankSum=1.721;SOR=0.434;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,168 0/1:27,34:61:99:.:932,0,726:9,18,14,20 +chrX 1646510 . T C 793 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=7.22;BaseQRankSum=0.466;DP=116;ExcessHet=0.0000;FS=2.526;MQ=60.00;MQRankSum=0;QD=7.22;ReadPosRankSum=-0.016;SOR=0.457;VarDP=114 GT:AD:DP:GQ:PL:SB 1:28,29:57:57:57,0:7,21,11,18 0/1:30,27:57:99:766,0,833:12,18,11,16 +chrX 1646549 . T C 640 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=5.78;BaseQRankSum=-0.28;DP=118;ExcessHet=0.0000;FS=1.500;MQ=60.00;MQRankSum=0;QD=5.78;ReadPosRankSum=-0.198;SOR=0.517;VarDP=116 GT:AD:DP:GQ:PL:SB 1:29,33:62:44:44,0:9,20,14,19 0/1:30,24:54:99:626,0,801:15,15,12,12 +chrX 1646658 . CTTTCT C 279.97 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=7.98;BaseQRankSum=1.043;DP=107;ExcessHet=0.0000;FS=6.983;MQ=60.00;MQRankSum=0;QD=7.98;ReadPosRankSum=1.527;SOR=1.219;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:99:60:0,114 0/1:23,17:40:99:.:319,0,769:14,9,6,11 +chrX 1646718 . T C 440 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=12.70;BaseQRankSum=-0.563;DP=100;ExcessHet=0.0000;FS=1.273;MQ=60.00;MQRankSum=0;QD=12.70;ReadPosRankSum=-0.365;SOR=0.842;VarDP=37 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:99:60:0,114 0/1:19,18:37:99:.:470,0,530:10,9,8,10 +chrX 1646958 . CTCTTTCTT C,CTCTT 1078.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=28,20;AS_QD=5.23,11.86;BaseQRankSum=1.287;DP=113;ExcessHet=0.0000;FS=8.599;MQ=59.83;MQRankSum=0;QD=12.29;ReadPosRankSum=2.31;SOR=0.248;VarDP=91 GT:AD:DP:GQ:PL:SB 1:19,28,0:47:99:371,0,1203:6,13,11,17 0/2:24,0,20:44:99:747,819,1815,0,996,935:7,17,11,9 +chrX 1647070 . T C 481 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=10.65;BaseQRankSum=-2.874;DP=113;ExcessHet=0.0000;FS=4.201;MQ=60.00;MQRankSum=0;QD=10.65;ReadPosRankSum=0.773;SOR=0.247;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,1144 0/1:24,24:48:99:.:511,0,661:8,16,12,12 +chrX 1647117 . C CTCTT 681.97 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=18.03;BaseQRankSum=0.962;DP=98;ExcessHet=0.0000;FS=12.597;MQ=60.00;MQRankSum=0;QD=18.03;ReadPosRankSum=0.596;SOR=1.041;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:54:11:54:0,11 0/1:21,19:40:99:.:721,0,814:15,6,7,12 +chrX 1647160 . CCTTT C 734.97 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=18.43;BaseQRankSum=1.798;DP=125;ExcessHet=0.0000;FS=6.740;MQ=60.00;MQRankSum=0;QD=18.43;ReadPosRankSum=1.235;SOR=0.525;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:70:99:70:0,1800 0/1:22,20:42:99:.:774,0,863:15,7,9,11 +chrX 1647386 . G A 1193 . AC=2;AF=0.667;AN=3;AS_AltDP=78;AS_QD=8.61;BaseQRankSum=-1.082;DP=143;ExcessHet=0.0000;FS=3.982;MQ=60.00;MQRankSum=0;QD=8.61;ReadPosRankSum=1.313;SOR=0.434;VarDP=142 GT:AD:DP:GQ:PL:SB 1:32,45:77:99:351,0:14,18,22,23 0/1:32,33:65:99:872,0,862:13,19,17,16 +chrX 1647453 . C G 1064 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=9.51;BaseQRankSum=0.245;DP=116;ExcessHet=0.0000;FS=3.422;MQ=60.00;MQRankSum=0;QD=9.51;ReadPosRankSum=1.273;SOR=0.550;VarDP=115 GT:AD:DP:GQ:PL:SB 1:24,31:55:99:227,0:10,14,15,16 0/1:29,31:60:99:867,0,818:13,16,17,14 +chrX 1647683 . C T 818 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=6.63;BaseQRankSum=-0.253;DP=132;ExcessHet=0.0000;FS=5.404;MQ=60.00;MQRankSum=0;QD=6.63;ReadPosRankSum=-0.511;SOR=0.676;VarDP=128 GT:AD:DP:GQ:PL:SB 1:30,34:64:99:132,0:17,13,18,16 0/1:37,27:64:99:716,0,1068:21,16,10,17 +chrX 1647976 . T C 1166 . AC=1;AF=0.333;AN=3;AS_AltDP=44;AS_QD=14.77;BaseQRankSum=0.538;DP=152;ExcessHet=0.0000;FS=7.499;MQ=60.00;MQRankSum=0;QD=14.77;ReadPosRankSum=-0.251;SOR=0.408;VarDP=81 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:70:50:70:0,50 0/1:37,44:81:99:.:1196,0,923:24,13,21,23 +chrX 1648906 . C CTTTT 365.97 . AC=2;AF=0.667;AN=3;AS_AltDP=39;AS_QD=4.45;BaseQRankSum=-0.402;DP=113;ExcessHet=0.0000;FS=1.728;MQ=59.92;MQRankSum=1.055;QD=4.45;ReadPosRankSum=2.113;SOR=0.968;VarDP=91 GT:AD:DP:GQ:PL:SB 1:27,28:55:19:19,0:13,14,18,10 0/1:25,11:36:99:386,0,966:13,12,4,7 +chrX 1648953 . G A 320 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=7.95;BaseQRankSum=-0.636;DP=103;ExcessHet=0.0000;FS=16.088;MQ=60.00;MQRankSum=0;QD=7.95;ReadPosRankSum=-1.115;SOR=2.406;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,1581 0/1:29,15:44:99:.:350,0,811:17,12,3,12 +chrX 1649351 . C G 624 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=12.34;BaseQRankSum=1.253;DP=101;ExcessHet=0.0000;FS=10.484;MQ=60.00;MQRankSum=0;QD=12.34;ReadPosRankSum=-1.278;SOR=0.424;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:34:46:0,34 0/1:29,24:53:99:.:654,0,787:21,8,11,13 +chrX 1649597 . CAAAAA C 858.97 . AC=2;AF=0.667;AN=3;AS_AltDP=39;AS_QD=11.82;BaseQRankSum=0.665;DP=102;ExcessHet=0.0000;FS=7.802;MQ=60.00;MQRankSum=0;QD=11.82;ReadPosRankSum=0.034;SOR=1.319;VarDP=76 GT:AD:DP:GQ:PL:SB 1:17,25:42:99:385,0:7,10,16,9 0/1:20,14:34:99:513,0,740:10,10,9,5 +chrX 1650376 . G A 533 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=12.80;BaseQRankSum=-2.173;DP=112;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=12.80;ReadPosRankSum=0.634;SOR=0.693;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,229 0/1:22,22:44:99:.:563,0,608:13,9,13,9 +chrX 1650492 . CTTTTTTTTTT C 442.97 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=13.77;BaseQRankSum=0.065;DP=110;ExcessHet=0.0000;FS=0.000;MQ=59.29;MQRankSum=1.285;QD=13.77;ReadPosRankSum=-0.035;SOR=0.631;VarDP=35 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,229 0/1:20,15:35:99:.:482,0,721:11,9,8,7 +chrX 1650673 . AT A 588.97 . AC=2;AF=0.667;AN=3;AS_AltDP=43;AS_QD=7.48;BaseQRankSum=0.967;DP=101;ExcessHet=0.0000;FS=4.109;MQ=60.00;MQRankSum=0;QD=7.48;ReadPosRankSum=0.783;SOR=0.383;VarDP=84 GT:AD:DP:GQ:PL:SB 1:16,21:37:99:156,0:10,6,11,10 0/1:25,22:47:99:472,0,527:15,10,11,11 +chrX 1651100 . T C 476 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=13.32;BaseQRankSum=-0.785;DP=99;ExcessHet=0.0000;FS=0.000;MQ=59.54;MQRankSum=-1.395;QD=13.32;ReadPosRankSum=-0.243;SOR=0.904;VarDP=38 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:58:99:58:0,1439 0/1:19,19:38:99:.:506,0,516:10,9,11,8 +chrX 1651112 . G GTT,GTTT 771.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=10,26;AS_QD=7.36,13.77;BaseQRankSum=0.986;DP=93;ExcessHet=0.0000;FS=4.124;MQ=59.08;MQRankSum=0.436;QD=15.02;ReadPosRankSum=0.204;SOR=0.678;VarDP=54 GT:AD:DP:GQ:PL:SB 1:9,10,5:24:99:206,0,205:4,5,7,8 0/2:9,0,21:30:99:605,632,894,0,263,200:3,6,13,8 +chrX 1652075 . C A 884 . AC=2;AF=0.667;AN=3;AS_AltDP=88;AS_QD=4.91;BaseQRankSum=-0.013;DP=193;ExcessHet=0.0000;FS=2.532;MQ=55.26;MQRankSum=0.049;QD=4.91;ReadPosRankSum=0.863;SOR=0.893;VarDP=186 GT:AD:DP:GQ:PL:SB 1:42,50:92:99:178,0:19,23,30,20 0/1:56,38:94:99:736,0,1462:31,25,19,19 +chrX 1652853 . A G 883 . AC=2;AF=0.667;AN=3;AS_AltDP=70;AS_QD=6.66;BaseQRankSum=0.31;DP=138;ExcessHet=0.0000;FS=2.155;MQ=59.74;MQRankSum=0.146;QD=6.66;ReadPosRankSum=1.569;SOR=0.510;VarDP=137 GT:AD:DP:GQ:PL:SB 1:36,41:77:99:125,0:17,19,19,22 0/1:31,29:60:99:788,0,832:13,18,16,13 +chrX 1652883 . A G 899 . AC=2;AF=0.667;AN=3;AS_AltDP=70;AS_QD=7.04;BaseQRankSum=0.611;DP=137;ExcessHet=0.0000;FS=0.000;MQ=59.63;MQRankSum=0.076;QD=7.04;ReadPosRankSum=1.835;SOR=0.729;VarDP=132 GT:AD:DP:GQ:PL:SB 1:36,39:75:98:98,0:17,19,15,24 0/1:26,31:57:99:831,0,693:11,15,16,15 +chrX 1653090 . CA C 486.97 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=14.22;BaseQRankSum=-0.436;DP=108;ExcessHet=0.0000;FS=0.000;MQ=59.38;MQRankSum=-1.015;QD=14.22;ReadPosRankSum=-1.024;SOR=0.760;VarDP=37 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,331 0/1:13,24:37:99:.:526,0,229:5,8,9,15 +chrX 1653115 . TG T 891.97 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=18.25;BaseQRankSum=1.081;DP=113;ExcessHet=0.0000;FS=1.058;MQ=59.76;MQRankSum=-1.216;QD=18.25;ReadPosRankSum=2.064;SOR=0.864;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,331 0/1:22,29:51:99:.:931,0,667:10,12,12,17 +chrX 1653571 . T C 874 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=8.78;BaseQRankSum=1.127;DP=108;ExcessHet=0.0000;FS=1.602;MQ=59.32;MQRankSum=0.205;QD=8.78;ReadPosRankSum=0.495;SOR=0.499;VarDP=103 GT:AD:DP:GQ:PL:SB 1:25,31:56:99:241,0:11,14,16,15 0/1:21,26:47:99:663,0,543:9,12,12,14 +chrX 1653592 . CTTTT C 845.97 . AC=2;AF=0.667;AN=3;AS_AltDP=42;AS_QD=10.29;BaseQRankSum=2.031;DP=106;ExcessHet=0.0000;FS=0.813;MQ=58.88;MQRankSum=0.676;QD=10.29;ReadPosRankSum=0.705;SOR=0.713;VarDP=86 GT:AD:DP:GQ:PL:SB 1:21,21:42:99:114,0:12,9,12,9 0/1:23,21:44:99:771,0,862:11,12,8,13 +chrX 1653833 . T C 758 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=7.04;BaseQRankSum=0.858;DP=115;ExcessHet=0.0000;FS=16.283;MQ=59.84;MQRankSum=0.055;QD=7.04;ReadPosRankSum=2.9;SOR=0.564;VarDP=112 GT:AD:DP:GQ:PL:SB 1:29,31:60:99:105,0:8,21,14,17 0/1:25,27:52:99:683,0,703:10,15,18,9 +chrX 1653980 . C T 903 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=7.18;BaseQRankSum=1.558;DP=133;ExcessHet=0.0000;FS=0.652;MQ=60.00;MQRankSum=0;QD=7.18;ReadPosRankSum=-0.286;SOR=0.590;VarDP=130 GT:AD:DP:GQ:PL:SB 1:27,27:54:55:55,0:16,11,15,12 0/1:41,35:76:99:878,0,1117:21,20,17,18 +chrX 1654143 . A C 845 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=16.51;BaseQRankSum=-0.338;DP=121;ExcessHet=0.0000;FS=1.107;MQ=58.59;MQRankSum=-3.188;QD=16.51;ReadPosRankSum=-0.147;SOR=0.481;VarDP=53 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:67:84:67:.:.:0,84 0|1:30,23:53:99:.:0|1:1654143_A_C:875,0,1169:1654143:10,20,9,14 +chrX 1654145 . G A 845 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=16.51;BaseQRankSum=0.21;DP=121;ExcessHet=0.0000;FS=1.107;MQ=58.59;MQRankSum=-3.188;QD=16.51;ReadPosRankSum=0.045;SOR=0.481;VarDP=53 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:67:84:67:.:.:0,84 0|1:30,23:53:99:.:0|1:1654143_A_C:875,0,1169:1654143:10,20,9,14 +chrX 1654369 . G A 1163 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=17.81;BaseQRankSum=1.771;DP=134;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=17.81;ReadPosRankSum=-0.245;SOR=0.812;VarDP=67 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:67:84:67:.:.:0,84 0|1:36,31:67:99:.:0|1:1654369_G_A:1193,0,1408:1654369:21,15,19,12 +chrX 1654373 . G A 1166 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=18.12;BaseQRankSum=3.35;DP=130;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=18.12;ReadPosRankSum=-0.797;SOR=0.742;VarDP=66 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:64:9:64:.:.:0,9 0|1:35,31:66:99:.:0|1:1654369_G_A:1196,0,1376:1654369:21,14,19,12 +chrX 1654382 . G A 1124 . AC=1;AF=0.500;AN=2;AS_AltDP=30;AS_QD=17.75;BaseQRankSum=2.789;DP=131;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=17.75;ReadPosRankSum=-0.344;SOR=0.806;VarDP=65 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB .:.:65:0:65:.:.:0,0 0|1:35,30:65:99:.:0|1:1654369_G_A:1154,0,1359:1654369:20,15,18,12 +chrX 1654529 . T C 324 . AC=2;AF=0.667;AN=3;AS_AltDP=39;AS_QD=4.16;BaseQRankSum=-1.25;DP=89;ExcessHet=0.0000;FS=0.000;MQ=59.95;MQRankSum=0;QD=4.16;ReadPosRankSum=0.379;SOR=0.687;VarDP=85 GT:AD:DP:GQ:PL:SB 1:24,26:50:37:37,0:10,14,11,15 0/1:22,13:35:99:317,0,649:10,12,6,7 +chrX 1654610 . C CA,CAAAAAAAA 205.97 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=0,9;AS_QD=0.00,9.07;BaseQRankSum=0.953;DP=112;ExcessHet=0.0000;FS=32.403;MQ=58.93;MQRankSum=-1.983;QD=9.07;ReadPosRankSum=-2.31;SOR=3.011;VarDP=27 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:72:24:65:0,24,24 0/2:18,0,9:27:99:.:245,287,630,0,355,599:15,3,1,8 +chrX 1655234 . T C 654 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=10.06;BaseQRankSum=0.567;DP=138;ExcessHet=0.0000;FS=3.358;MQ=60.00;MQRankSum=0;QD=10.06;ReadPosRankSum=-1.932;SOR=1.179;VarDP=68 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:72:24:65:0,24 0/1:40,28:68:99:.:684,0,1056:20,20,11,17 +chrX 1655448 . C A 979 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=8.93;BaseQRankSum=1.085;DP=116;ExcessHet=0.0000;FS=7.366;MQ=60.00;MQRankSum=0;QD=8.93;ReadPosRankSum=-0.008;SOR=1.173;VarDP=113 GT:AD:DP:GQ:PL:SB 1:26,31:57:99:171,0:17,9,7,24 0/1:25,31:56:99:838,0,561:10,15,17,14 +chrX 1655559 . G GT 532.97 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=12.17;BaseQRankSum=-2.371;DP=118;ExcessHet=0.0000;FS=2.606;MQ=60.00;MQRankSum=0;QD=12.17;ReadPosRankSum=-0.427;SOR=0.459;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,134 0/1:18,29:47:99:.:572,0,313:11,7,14,15 +chrX 1655800 . A G 542 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=12.43;BaseQRankSum=-1.178;DP=109;ExcessHet=0.0000;FS=1.154;MQ=59.61;MQRankSum=0;QD=12.43;ReadPosRankSum=-0.385;SOR=0.420;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,134 0/1:23,23:46:99:.:572,0,632:14,9,12,11 +chrX 1656504 . TAC T 784.97 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=19.16;BaseQRankSum=-0.663;DP=105;ExcessHet=0.0000;FS=1.171;MQ=60.00;MQRankSum=0;QD=19.16;ReadPosRankSum=-0.695;SOR=0.963;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,134 0/1:20,23:43:99:.:824,0,675:10,10,10,13 +chrX 1656652 . CGTGTGTACACACATATATACACGTGTGTACACGCATATATACACGT C 665.97 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=18.08;BaseQRankSum=-0.1;DP=99;ExcessHet=0.0000;FS=9.548;MQ=60.00;MQRankSum=0;QD=18.08;ReadPosRankSum=-0.028;SOR=1.499;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,134 0/1:20,19:39:99:.:705,0,780:8,12,13,6 +chrX 1656782 . A ATG 652.97 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=20.97;BaseQRankSum=-0.658;DP=97;ExcessHet=0.0000;FS=0.000;MQ=59.43;MQRankSum=-0.643;QD=20.97;ReadPosRankSum=1.108;SOR=0.569;VarDP=33 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,134 0/1:11,22:33:99:.:692,0,308:7,4,13,9 +chrX 1657197 . G C 1065 . AC=2;AF=0.667;AN=3;AS_AltDP=68;AS_QD=8.69;BaseQRankSum=1.267;DP=132;ExcessHet=0.0000;FS=5.434;MQ=59.87;MQRankSum=-0.848;QD=8.69;ReadPosRankSum=-0.266;SOR=0.489;VarDP=126 GT:AD:DP:GQ:PL:SB 1:30,39:69:99:323,0:12,18,19,20 0/1:28,29:57:99:772,0,697:12,16,16,13 +chrX 1657989 . G A 827 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=15.58;BaseQRankSum=-0.549;DP=107;ExcessHet=0.0000;FS=1.038;MQ=60.00;MQRankSum=0;QD=15.58;ReadPosRankSum=-0.526;SOR=0.623;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:44:51:0,44 0/1:24,31:55:99:.:857,0,649:11,13,16,15 +chrX 1658065 . C G 778 . AC=2;AF=0.667;AN=3;AS_AltDP=68;AS_QD=5.69;BaseQRankSum=0.959;DP=144;ExcessHet=0.0000;FS=3.968;MQ=60.00;MQRankSum=0;QD=5.69;ReadPosRankSum=0.261;SOR=0.760;VarDP=142 GT:AD:DP:GQ:PL:SB 1:34,41:75:99:125,0:15,19,23,18 0/1:40,27:67:99:683,0,1073:19,21,14,13 +chrX 1658113 . G A 679 . AC=2;AF=0.667;AN=3;AS_AltDP=65;AS_QD=5.06;BaseQRankSum=1.06;DP=141;ExcessHet=0.0000;FS=1.320;MQ=60.00;MQRankSum=0;QD=5.06;ReadPosRankSum=0.255;SOR=0.763;VarDP=140 GT:AD:DP:GQ:PL:SB 1:39,43:82:99:139,0:18,21,25,18 0/1:36,22:58:99:570,0,1007:19,17,9,13 +chrX 1658204 . C G 839 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=16.09;BaseQRankSum=-0.736;DP=133;ExcessHet=0.0000;FS=3.855;MQ=60.00;MQRankSum=0;QD=16.09;ReadPosRankSum=-0.778;SOR=0.902;VarDP=54 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:78:99:78:.:.:0,112 0|1:30,24:54:99:.:0|1:1658204_C_G:869,0,1155:1658204:17,13,10,14 +chrX 1658214 . G C 955 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=16.98;BaseQRankSum=-0.288;DP=139;ExcessHet=0.0000;FS=3.657;MQ=60.00;MQRankSum=0;QD=16.98;ReadPosRankSum=-1.097;SOR=0.839;VarDP=58 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:78:99:78:.:.:0,112 0|1:30,28:58:99:.:0|1:1658204_C_G:985,0,1143:1658204:17,13,12,16 +chrX 1658540 . G GT 5496.97 . AC=3;AF=1.00;AN=3;AS_AltDP=148;AS_QD=30.76;DP=149;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=37.41;SOR=1.257;VarDP=148 GT:AD:DP:GQ:PL:SB 1:0,79:79:99:2956,0:0,0,30,49 1/1:0,69:69:99:2580,208,0:0,0,27,42 +chrX 1658562 . TTTTG T 5165.97 . AC=3;AF=1.00;AN=3;AS_AltDP=119;AS_QD=23.50;DP=145;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.74;SOR=1.402;VarDP=119 GT:AD:DP:GQ:PL:SB 1:0,61:61:99:2665,0:0,0,21,40 1/1:0,58:58:99:2540,174,0:0,0,22,36 +chrX 1658605 . A ATACT 6182.97 . AC=3;AF=1.00;AN=3;AS_AltDP=139;AS_QD=27.96;DP=144;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.76;SOR=1.076;VarDP=139 GT:AD:DP:GQ:PL:SB 1:0,74:74:99:3308,0:0,0,30,44 1/1:0,65:65:99:2914,196,0:0,0,28,37 +chrX 1658646 . TTC T 3618.97 . AC=3;AF=1.00;AN=3;AS_AltDP=99;AS_QD=26.66;BaseQRankSum=-0.226;DP=127;ExcessHet=0.0000;FS=6.023;MQ=59.45;MQRankSum=2.736;QD=35.86;ReadPosRankSum=1.213;SOR=0.079;VarDP=102 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:2,45:47:99:.:.:1394,0:.:2,0,23,22 1|1:1,54:55:99:0|1:1658646_TTC_T:2264,153,0:1658646:1,0,30,24 +chrX 1658657 . T C 4004 . AC=3;AF=1.00;AN=3;AS_AltDP=111;AS_QD=29.53;BaseQRankSum=-0.289;DP=135;ExcessHet=0.0000;FS=5.990;MQ=58.63;MQRankSum=2.421;QD=35.39;ReadPosRankSum=0.924;SOR=0.083;VarDP=114 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:2,52:54:99:.:.:1611,0:.:2,0,27,25 1|1:1,59:60:99:0|1:1658646_TTC_T:2423,168,0:1658646:1,0,33,26 +chrX 1658699 . G C 614 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=16.10;BaseQRankSum=0.496;DP=95;ExcessHet=0.0000;FS=7.067;MQ=52.22;MQRankSum=0.015;QD=16.10;ReadPosRankSum=0.691;SOR=1.087;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:53:46:53:0,46 0/1:16,24:40:99:.:644,0,397:6,10,15,9 +chrX 1658775 . A G 1672 . AC=2;AF=0.667;AN=3;AS_AltDP=40;AS_QD=33.36;DP=97;ExcessHet=0.0000;FS=0.000;MQ=44.44;QD=42.55;SOR=0.793;VarDP=40 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:53:46:53:.:.:0,46 1|1:0,40:40:99:.:0|1:1658775_A_G:1702,120,0:1658775:0,0,19,21 +chrX 1658792 . C T 1850 . AC=2;AF=0.667;AN=3;AS_AltDP=42;AS_QD=28.77;DP=96;ExcessHet=0.0000;FS=0.000;MQ=41.05;QD=44.76;SOR=1.005;VarDP=42 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:53:46:53:.:.:0,46 1|1:0,42:42:99:.:0|1:1658775_A_G:1880,126,0:1658775:0,0,18,24 +chrX 1658795 . C T 624 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=16.77;BaseQRankSum=-0.185;DP=94;ExcessHet=0.0000;FS=1.287;MQ=40.00;MQRankSum=-1.655;QD=16.77;ReadPosRankSum=1.229;SOR=0.389;VarDP=39 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:53:46:53:.:.:0,46 0|1:16,23:39:99:.:0|1:1658775_A_G:654,0,414:1658775:6,10,11,12 +chrX 1658808 . C T 1994 . AC=3;AF=1.00;AN=3;AS_AltDP=70;AS_QD=21.31;BaseQRankSum=-0.261;DP=95;ExcessHet=0.0000;FS=3.155;MQ=47.10;MQRankSum=-5.891;QD=21.31;ReadPosRankSum=-0.834;SOR=0.394;VarDP=95 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:25,30:55:99:.:.:224,0:.:9,16,14,16 1|1:0,40:40:99:0|1:1658775_A_G:1800,120,0:1658775:0,0,18,22 +chrX 1658848 . T C 2085 . AC=3;AF=1.00;AN=3;AS_AltDP=69;AS_QD=23.24;BaseQRankSum=-1.618;DP=91;ExcessHet=0.0000;FS=4.741;MQ=51.14;MQRankSum=-3.47;QD=23.24;ReadPosRankSum=1.166;SOR=0.608;VarDP=91 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:22,25:47:99:.:.:135,0:.:9,13,13,12 1|1:0,44:44:99:0|1:1658775_A_G:1980,132,0:1658775:0,0,24,20 +chrX 1658855 . G C 2265 . AC=3;AF=1.00;AN=3;AS_AltDP=71;AS_QD=25.22;BaseQRankSum=-0.371;DP=91;ExcessHet=0.0000;FS=2.115;MQ=51.52;MQRankSum=-3.27;QD=25.22;ReadPosRankSum=0.226;SOR=0.698;VarDP=91 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:20,27:47:99:.:.:315,0:.:9,11,14,13 1|1:0,44:44:99:0|1:1658775_A_G:1980,132,0:1658775:0,0,24,20 +chrX 1658858 . A C 2275 . AC=3;AF=1.00;AN=3;AS_AltDP=72;AS_QD=24.78;BaseQRankSum=-1.758;DP=93;ExcessHet=0.0000;FS=3.321;MQ=51.72;MQRankSum=-3.373;QD=24.78;ReadPosRankSum=0.355;SOR=0.606;VarDP=93 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:21,27:48:99:.:.:290,0:.:9,12,14,13 1|1:0,45:45:99:0|1:1658775_A_G:2015,135,0:1658775:0,0,24,21 +chrX 1658922 . C T 2340 . AC=3;AF=1.00;AN=3;AS_AltDP=83;AS_QD=22.15;BaseQRankSum=-0.057;DP=110;ExcessHet=0.0000;FS=4.390;MQ=55.86;MQRankSum=-2.512;QD=22.15;ReadPosRankSum=0.102;SOR=0.883;VarDP=107 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:24,31:55:99:.:.:320,0:.:13,11,13,18 1|1:0,52:52:99:0|1:1658775_A_G:2050,156,0:1658775:0,0,23,29 +chrX 1659032 . C T 2961 . AC=3;AF=1.00;AN=3;AS_AltDP=102;AS_QD=21.67;BaseQRankSum=1.485;DP=154;ExcessHet=0.0000;FS=2.519;MQ=56.74;MQRankSum=-1.779;QD=21.67;ReadPosRankSum=0.79;SOR=1.000;VarDP=138 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:36,38:74:99:.:.:111,0:.:18,18,19,19 1|1:0,64:64:99:0|1:1659032_C_T:2880,193,0:1659032:0,0,25,39 +chrX 1659033 . A *,G 2961 . AC=0,3;AF=0.00,1.00;AN=3;AS_AltDP=10,102;AS_QD=0.00,21.67;BaseQRankSum=1.707;DP=152;ExcessHet=0.0000;FS=2.470;MQ=56.69;MQRankSum=-1.694;QD=20.21;ReadPosRankSum=-0.47;SOR=0.970;VarDP=148 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 2:36,10,38:84:99:.:.:111,1646,0:.:18,18,24,24 2|2:0,0,64:64:99:0|1:1659032_C_T:2880,2880,2880,193,193,0:1659032:0,0,25,39 +chrX 1659054 . A G 5679 . AC=3;AF=1.00;AN=3;AS_AltDP=140;AS_QD=31.49;DP=146;ExcessHet=0.0000;FS=0.000;MQ=56.67;QD=40.78;SOR=0.889;VarDP=140 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,73:73:99:.:.:2786,0:.:0,0,33,32 1|1:0,67:67:99:0|1:1659032_C_T:2923,202,0:1659032:0,0,27,40 +chrX 1659209 . T C 2083 . AC=2;AF=0.667;AN=3;AS_AltDP=66;AS_QD=32.02;DP=138;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.02;SOR=2.035;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:99:68:0,119 1/1:0,66:66:99:.:2113,197,0:0,0,48,18 +chrX 1659411 . C CTT 6696.97 . AC=3;AF=1.00;AN=3;AS_AltDP=154;AS_QD=28.60;DP=161;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.74;SOR=0.801;VarDP=154 GT:AD:DP:GQ:PL:SB 1:0,75:75:99:3278,0:0,0,43,32 1/1:0,79:79:99:3458,237,0:0,0,38,41 +chrX 1659527 . G A 3971 . AC=2;AF=0.667;AN=3;AS_AltDP=105;AS_QD=29.20;BaseQRankSum=-0.119;DP=141;ExcessHet=0.0000;FS=4.962;MQ=60.00;MQRankSum=0;QD=29.20;ReadPosRankSum=1.542;SOR=0.936;VarDP=137 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,76:76:99:.:.:2981,0:.:0,0,35,41 0|1:32,29:61:99:0|1:1659527_G_A:1020,0,1143:1659527:17,15,10,19 +chrX 1659543 . G C 2583 . AC=3;AF=1.00;AN=3;AS_AltDP=102;AS_QD=18.80;BaseQRankSum=2.997;DP=141;ExcessHet=0.0000;FS=0.718;MQ=60.00;MQRankSum=0;QD=18.80;ReadPosRankSum=1.622;SOR=0.845;VarDP=139 GT:AD:DP:GQ:PL:SB 1:36,41:77:99:195,0:17,19,19,22 1/1:1,61:62:99:2418,161,0:1,0,27,34 +chrX 1659551 . TTGTG T 1207.97 . AC=2;AF=0.667;AN=3;AS_AltDP=70;AS_QD=9.24;BaseQRankSum=0.442;DP=136;ExcessHet=0.0000;FS=4.075;MQ=60.00;MQRankSum=0;QD=9.24;ReadPosRankSum=-0.477;SOR=0.875;VarDP=135 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:37,39:76:70:.:.:70,0:.:19,18,18,21 0|1:28,31:59:99:0|1:1659527_G_A:1177,0,1062:1659527:15,13,13,18 +chrX 1659591 . G A 879 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=16.23;BaseQRankSum=1.935;DP=120;ExcessHet=0.0000;FS=3.662;MQ=59.66;MQRankSum=-0.83;QD=16.23;ReadPosRankSum=-0.058;SOR=0.590;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,119 0/1:24,32:56:99:.:909,0,893:14,10,15,17 +chrX 1659592 . G A 561 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=10.55;BaseQRankSum=-1.258;DP=120;ExcessHet=0.0000;FS=2.244;MQ=59.66;MQRankSum=0.871;QD=10.55;ReadPosRankSum=-0.15;SOR=0.921;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,119 0/1:33,23:56:99:.:591,0,1276:16,17,13,10 +chrX 1659639 . G GTT 2477.97 . AC=3;AF=1.00;AN=3;AS_AltDP=90;AS_QD=20.30;BaseQRankSum=2.145;DP=133;ExcessHet=0.0000;FS=5.158;MQ=60.00;MQRankSum=0;QD=20.30;ReadPosRankSum=-0.107;SOR=0.356;VarDP=124 GT:AD:DP:GQ:PL:SB 1:32,34:66:85:85,0:22,10,22,12 1/1:2,56:58:99:2432,125,0:2,0,32,24 +chrX 1659770 . T C 796 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=14.00;BaseQRankSum=0.249;DP=125;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.00;ReadPosRankSum=-0.524;SOR=0.611;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,1169 0/1:28,31:59:99:.:826,0,707:12,16,14,17 +chrX 1659811 . ATT A 1289.97 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=21.10;BaseQRankSum=1.343;DP=127;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=21.10;ReadPosRankSum=-0.208;SOR=0.614;VarDP=63 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:99:62:.:.:0,1169 0|1:29,34:63:99:.:0|1:1659811_ATT_A:1329,0,1103:1659811:13,16,16,18 +chrX 1659819 . TTGTG T 1280.97 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=20.95;BaseQRankSum=2.274;DP=126;ExcessHet=0.0000;FS=0.952;MQ=60.00;MQRankSum=0;QD=20.95;ReadPosRankSum=0.17;SOR=0.864;VarDP=63 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:99:62:.:.:0,1169 0|1:29,34:63:99:.:0|1:1659811_ATT_A:1320,0,1115:1659811:14,15,15,19 +chrX 1659879 . C CTA 968.97 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=19.38;BaseQRankSum=-0.927;DP=120;ExcessHet=0.0000;FS=7.883;MQ=60.00;MQRankSum=0;QD=19.38;ReadPosRankSum=-0.505;SOR=1.259;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,1169 0/1:24,28:52:99:.:1008,0,895:14,10,10,18 +chrX 1659947 . A AG 444.97 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=11.00;BaseQRankSum=-1.814;DP=108;ExcessHet=0.0000;FS=14.507;MQ=60.00;MQRankSum=0;QD=11.00;ReadPosRankSum=0.948;SOR=1.905;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,1169 0/1:25,19:44:99:.:484,0,676:15,10,5,14 +chrX 1660849 . T TAAATATAATAATAAAAATAA 2448.97 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=32.74;BaseQRankSum=-0.38;DP=128;ExcessHet=0.0000;FS=0.000;MQ=59.68;MQRankSum=0;QD=42.17;ReadPosRankSum=1.147;SOR=0.317;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,1169 1/1:1,58:59:99:.:2488,131,0:1,0,32,26 +chrX 1660881 . A T 1574 . AC=2;AF=0.667;AN=3;AS_AltDP=50;AS_QD=31.45;BaseQRankSum=-0.377;DP=115;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=31.45;ReadPosRankSum=0.272;SOR=0.562;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,1169 1/1:1,50:51:99:.:1604,118,0:1,0,32,18 +chrX 1660998 . T C 1478 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=32.09;DP=110;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.09;SOR=0.823;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,1169 1/1:0,47:47:99:.:1508,140,0:0,0,25,22 +chrX 1661156 . A T 1779 . AC=3;AF=1.00;AN=3;AS_AltDP=68;AS_QD=21.28;BaseQRankSum=2.206;DP=91;ExcessHet=0.0000;FS=0.000;MQ=59.09;MQRankSum=-1.17;QD=21.28;ReadPosRankSum=-2.727;SOR=0.646;VarDP=85 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:17,24:41:99:.:.:314,0:.:9,8,14,10 1|1:0,44:44:99:0|1:1661150_G_A:1495,132,0:1661150:0,0,21,23 +chrX 1661605 . C A 935 . AC=2;AF=0.667;AN=3;AS_AltDP=36;AS_QD=23.54;BaseQRankSum=3.124;DP=123;ExcessHet=0.0000;FS=9.412;MQ=58.27;MQRankSum=-0.418;QD=23.54;ReadPosRankSum=-1.805;SOR=1.598;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:19:62:0,19 1/1:5,36:41:71:.:965,71,0:1,3,25,11 +chrX 1662265 . C G 1306 . AC=3;AF=1.00;AN=3;AS_AltDP=72;AS_QD=13.10;BaseQRankSum=-0.447;DP=104;ExcessHet=0.0000;FS=1.775;MQ=59.80;MQRankSum=1.096;QD=13.10;ReadPosRankSum=0.31;SOR=0.500;VarDP=102 GT:AD:DP:GQ:PL:SB 1:30,34:64:99:125,0:12,18,16,18 1/1:0,38:38:99:1211,114,0:0,0,17,21 +chrX 1662452 . T TAAAAA 935.97 . AC=2;AF=0.667;AN=3;AS_AltDP=36;AS_QD=16.53;BaseQRankSum=0.423;DP=81;ExcessHet=0.0000;FS=1.027;MQ=59.52;MQRankSum=0.96;QD=16.53;ReadPosRankSum=-0.899;SOR=0.556;VarDP=59 GT:AD:DP:GQ:PL:SB 1:10,16:26:99:269,0:6,4,8,8 0/1:13,20:33:99:706,0,476:9,4,14,6 +chrX 1662479 . T C 1076 . AC=2;AF=0.667;AN=3;AS_AltDP=48;AS_QD=14.00;BaseQRankSum=1.935;DP=82;ExcessHet=0.0000;FS=3.082;MQ=59.92;MQRankSum=1.193;QD=14.00;ReadPosRankSum=-0.487;SOR=0.425;VarDP=79 GT:AD:DP:GQ:PL:SB 1:12,23:35:99:433,0:5,7,11,12 0/1:19,25:44:99:673,0,469:15,4,16,9 +chrX 1662582 . A G 2632 . AC=3;AF=1.00;AN=3;AS_AltDP=109;AS_QD=20.02;BaseQRankSum=-0.384;DP=140;ExcessHet=0.0000;FS=9.367;MQ=60.00;MQRankSum=0;QD=20.02;ReadPosRankSum=-0.663;SOR=0.212;VarDP=133 GT:AD:DP:GQ:PL:SB 1:24,32:56:99:263,0:7,17,16,16 1/1:0,77:77:99:2399,230,0:0,0,36,41 +chrX 1662689 . A T 1805 . AC=2;AF=0.667;AN=3;AS_AltDP=69;AS_QD=16.83;BaseQRankSum=2.356;DP=114;ExcessHet=0.0000;FS=2.588;MQ=59.94;MQRankSum=1.415;QD=16.83;ReadPosRankSum=0.46;SOR=0.838;VarDP=109 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:21,33:54:99:.:.:559,0:.:12,9,17,16 0|1:19,36:55:99:0|1:1662689_A_T:1276,0,561:1662689:7,12,21,15 +chrX 1662722 . T G 1568 . AC=2;AF=0.667;AN=3;AS_AltDP=67;AS_QD=15.51;BaseQRankSum=-0.574;DP=108;ExcessHet=0.0000;FS=2.676;MQ=59.94;MQRankSum=1.71;QD=15.51;ReadPosRankSum=1.705;SOR=0.990;VarDP=103 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:23,31:54:99:.:.:349,0:.:13,10,18,13 0|1:13,36:49:99:0|1:1662689_A_T:1249,0,388:1662689:5,8,20,16 +chrX 1662777 . A G 1655 . AC=2;AF=0.667;AN=3;AS_AltDP=80;AS_QD=15.32;BaseQRankSum=-1.615;DP=117;ExcessHet=0.0000;FS=0.799;MQ=59.94;MQRankSum=1.894;QD=15.32;ReadPosRankSum=0.404;SOR=0.576;VarDP=110 GT:AD:DP:GQ:PL:SB 1:18,39:57:99:594,0:8,10,21,18 0/1:12,41:53:99:1091,0,249:6,6,19,22 +chrX 1662857 . G GTATATATATATATATA 381.97 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=10.79;BaseQRankSum=-2.103;DP=104;ExcessHet=0.0000;FS=1.366;MQ=58.90;MQRankSum=0.995;QD=10.79;ReadPosRankSum=-0.167;SOR=0.404;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:53:99:53:0,1215 0/1:27,12:39:99:.:421,0,1099:11,16,6,6 +chrX 1662876 . TATA T 1043.97 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=24.07;BaseQRankSum=-0.944;DP=102;ExcessHet=0.0000;FS=2.727;MQ=58.50;MQRankSum=-0.082;QD=24.07;ReadPosRankSum=0.138;SOR=1.255;VarDP=45 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:53:99:53:.:.:0,1215 0|1:16,29:45:99:.:0|1:1662876_TATA_T:1083,0,571:1662876:8,8,11,18 +chrX 1662878 . TA T,* 1052.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=36,0;AS_QD=23.23,0.00;BaseQRankSum=-0.125;DP=97;ExcessHet=0.0000;FS=0.860;MQ=59.51;MQRankSum=0.97;QD=23.23;ReadPosRankSum=0.669;SOR=0.844;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:11,36,0:47:99:.:.:1092,0,1587:.:5,6,18,18 0|2:16,0,29:45:99:0|1:1662876_TATA_T:1083,1132,1790,0,658,571:1662876:8,8,11,18 +chrX 1662880 . TA T 1007.97 . AC=1;AF=1.00;AN=1;AS_AltDP=36;AS_QD=21.81;BaseQRankSum=-0.496;DP=99;ExcessHet=0.0000;FS=1.288;MQ=59.52;MQRankSum=0.894;QD=21.81;ReadPosRankSum=0.824;SOR=0.446;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 1:12,36:48:99:.:1047,0:5,7,18,18 ./.:.:50:0:50:0,0,0 +chrX 1662881 . A *,T 1149 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=1,29;AS_QD=0.00,26.20;BaseQRankSum=-0.848;DP=96;ExcessHet=0.0000;FS=0.835;MQ=58.71;MQRankSum=-0.054;QD=25.63;ReadPosRankSum=-0.747;SOR=0.801;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:12,36,0:48:99:.:.:1047,0,1587:.:5,7,18,18 0|2:16,1,29:46:99:0|1:1662876_TATA_T:1179,1112,1766,0,638,579:1662876:8,8,11,19 +chrX 1662883 . A T,* 2164 . AC=2,0;AF=0.667,0.00;AN=3;AS_AltDP=64,1;AS_QD=23.85,0.00;BaseQRankSum=0.404;DP=94;ExcessHet=0.0000;FS=0.000;MQ=59.11;MQRankSum=0.872;QD=23.59;ReadPosRankSum=1.123;SOR=0.772;VarDP=93 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:12,35,0:47:99:.:.:1015,0,1555:.:5,7,18,17 0|1:16,29,1:46:99:0|1:1662876_TATA_T:1179,0,579,1112,638,1766:1662876:8,8,11,19 +chrX 1662885 . A T 2194 . AC=2;AF=0.667;AN=3;AS_AltDP=64;AS_QD=24.44;BaseQRankSum=1.468;DP=95;ExcessHet=0.0000;FS=0.000;MQ=59.29;MQRankSum=-0.054;QD=24.44;ReadPosRankSum=0.505;SOR=0.730;VarDP=91 GT:AD:DP:GQ:PL:SB 1:11,34:45:99:1035,0:4,7,18,16 0/1:16,30:46:99:1189,0,581:8,8,10,20 +chrX 1663482 . T A 697 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=13.46;BaseQRankSum=0.746;DP=116;ExcessHet=0.0000;FS=0.000;MQ=59.76;MQRankSum=-1.401;QD=13.46;ReadPosRankSum=-1.238;SOR=0.693;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:49:60:0,49 0/1:27,27:54:99:.:727,0,736:14,13,14,13 +chrX 1664019 . C T 2065 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=33.79;DP=122;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.79;SOR=0.826;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:49:60:0,49 1/1:0,62:62:99:.:2095,186,0:0,0,29,33 +chrX 1664140 . T C 515 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=12.98;BaseQRankSum=0.662;DP=104;ExcessHet=0.0000;FS=4.561;MQ=60.00;MQRankSum=0;QD=12.98;ReadPosRankSum=-1.057;SOR=0.388;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:49:60:0,49 0/1:21,21:42:99:.:545,0,538:7,14,11,10 +chrX 1664366 . A G 1985 . AC=3;AF=1.00;AN=3;AS_AltDP=84;AS_QD=18.49;BaseQRankSum=1.985;DP=109;ExcessHet=0.0000;FS=3.083;MQ=59.91;MQRankSum=-1.256;QD=18.49;ReadPosRankSum=0.214;SOR=1.104;VarDP=109 GT:AD:DP:GQ:PL:SB 1:25,31:56:99:253,0:12,13,14,17 1/1:0,53:53:99:1762,159,0:0,0,19,34 +chrX 1664488 . G A 710 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=15.42;BaseQRankSum=2.735;DP=113;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=15.42;ReadPosRankSum=-0.611;SOR=0.693;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,421 0/1:22,26:48:99:.:740,0,515:11,11,13,13 +chrX 1664619 . A T 713 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=12.18;BaseQRankSum=-2.656;DP=125;ExcessHet=0.0000;FS=13.837;MQ=60.00;MQRankSum=0;QD=12.18;ReadPosRankSum=-0.78;SOR=1.031;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,421 0/1:32,29:61:99:.:743,0,919:21,11,11,18 +chrX 1664733 . C CAA 442.97 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=10.95;BaseQRankSum=-0.017;DP=116;ExcessHet=0.0000;FS=12.092;MQ=60.00;MQRankSum=0;QD=10.95;ReadPosRankSum=0.675;SOR=1.623;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,421 0/1:27,17:44:99:.:482,0,822:10,17,12,5 +chrX 1664846 . A T 925 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=15.40;BaseQRankSum=-1.155;DP=129;ExcessHet=0.0000;FS=11.371;MQ=60.00;MQRankSum=0;QD=15.40;ReadPosRankSum=-0.693;SOR=1.274;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,421 0/1:28,34:62:99:.:955,0,777:11,17,22,12 +chrX 1665109 . G A 2075 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=23.10;DP=122;ExcessHet=0.0000;FS=0.000;MQ=59.90;QD=36.93;SOR=0.728;VarDP=57 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:64:99:64:.:.:0,421 1|1:0,57:57:99:.:0|1:1665109_G_A:2105,171,0:1665109:0,0,29,28 +chrX 1665125 . G A 577 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=11.24;BaseQRankSum=0.897;DP=119;ExcessHet=0.0000;FS=0.000;MQ=59.90;MQRankSum=-1.124;QD=11.24;ReadPosRankSum=-1.304;SOR=0.722;VarDP=54 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:64:99:64:.:.:0,421 0|1:31,23:54:99:.:0|1:1665109_G_A:607,0,845:1665109:16,15,11,12 +chrX 1665535 . C G 768 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=15.35;BaseQRankSum=1.768;DP=117;ExcessHet=0.0000;FS=1.077;MQ=60.00;MQRankSum=0;QD=15.35;ReadPosRankSum=1.696;SOR=0.844;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,421 0/1:23,29:52:99:.:798,0,534:11,12,16,13 +chrX 1665865 . C CT 741.97 . AC=3;AF=1.00;AN=3;AS_AltDP=48;AS_QD=13.47;BaseQRankSum=-0.761;DP=86;ExcessHet=0.0000;FS=1.399;MQ=58.97;MQRankSum=0;QD=13.47;ReadPosRankSum=0.607;SOR=0.390;VarDP=58 GT:AD:DP:GQ:PL:SB 1:10,16:26:99:105,0:7,3,8,8 1/1:0,32:32:94:676,94,0:0,0,20,12 +chrX 1666381 . C T 722 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=5.88;BaseQRankSum=1.235;DP=131;ExcessHet=0.0000;FS=1.413;MQ=59.97;MQRankSum=0.892;QD=5.88;ReadPosRankSum=0.12;SOR=0.853;VarDP=128 GT:AD:DP:GQ:PL:SB 1:33,36:69:99:100,0:22,11,21,15 0/1:34,25:59:99:652,0,890:15,19,15,10 +chrX 1667534 . G T 1941 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=32.85;DP=130;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.85;SOR=1.355;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,148 1/1:0,60:60:99:.:1971,180,0:0,0,22,38 +chrX 1667850 . C T 1765 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=33.24;DP=121;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.24;SOR=0.931;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,148 1/1:0,54:54:99:.:1795,162,0:0,0,30,24 +chrX 1668509 . A AAATAAT 388.97 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=19.45;BaseQRankSum=1.453;DP=107;ExcessHet=0.0000;FS=0.000;MQ=59.37;MQRankSum=-0.909;QD=19.45;ReadPosRankSum=0.099;SOR=0.740;VarDP=22 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,148 0/1:11,11:22:99:.:428,0,416:6,5,5,6 +chrX 1669143 . C T 682 . AC=2;AF=0.667;AN=3;AS_AltDP=21;AS_QD=33.90;DP=86;ExcessHet=0.0000;FS=0.000;MQ=57.39;QD=33.90;SOR=1.230;VarDP=21 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,148 1/1:0,21:21:63:.:712,63,0:0,0,8,13 +chrX 1669193 . C T 1508 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=32.72;DP=112;ExcessHet=0.0000;FS=0.000;MQ=58.85;QD=32.72;SOR=0.919;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,148 1/1:0,47:47:99:.:1538,140,0:0,0,21,26 +chrX 1669245 . C A 1983 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=33.55;DP=125;ExcessHet=0.0000;FS=0.000;MQ=59.12;QD=33.55;SOR=0.986;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,148 1/1:0,60:60:99:.:2013,180,0:0,0,26,34 +chrX 1669724 . T G 2120 . AC=2;AF=0.667;AN=3;AS_AltDP=68;AS_QD=31.62;DP=135;ExcessHet=0.0000;FS=0.000;MQ=59.43;QD=31.62;SOR=0.814;VarDP=68 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,148 1/1:0,68:68:99:.:2150,203,0:0,0,36,32 +chrX 1669842 . G A 2370 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=24.89;BaseQRankSum=1.075;DP=124;ExcessHet=0.0000;FS=6.255;MQ=59.59;MQRankSum=-0.204;QD=42.11;ReadPosRankSum=2.387;SOR=0.297;VarDP=57 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:65:99:65:.:.:0,148 1|1:2,55:57:99:.:0|1:1669842_G_A:2400,127,0:1669842:2,0,26,29 +chrX 1669849 . T C 2560 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=36.52;DP=123;ExcessHet=0.0000;FS=0.000;MQ=59.58;QD=44.66;SOR=0.836;VarDP=58 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:65:99:65:.:.:0,148 1|1:0,58:58:99:.:0|1:1669842_G_A:2590,175,0:1669842:0,0,27,31 +chrX 1669850 . G A 2605 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=34.17;DP=124;ExcessHet=0.0000;FS=0.000;MQ=59.59;QD=44.66;SOR=0.796;VarDP=59 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:65:99:65:.:.:0,148 1|1:0,59:59:99:.:0|1:1669842_G_A:2635,178,0:1669842:0,0,28,31 +chrX 1669858 . G A 2614 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=31.95;DP=124;ExcessHet=0.0000;FS=0.000;MQ=59.87;QD=44.81;SOR=0.726;VarDP=59 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:65:99:65:.:.:0,148 1|1:0,59:59:99:.:0|1:1669842_G_A:2644,178,0:1669842:0,0,29,30 +chrX 1669875 . G C 2611 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=29.06;DP=129;ExcessHet=0.0000;FS=0.000;MQ=59.88;QD=43.30;SOR=0.793;VarDP=61 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:65:99:65:.:.:0,148 1|1:0,61:61:99:.:0|1:1669842_G_A:2641,184,0:1669842:0,0,32,29 +chrX 1669935 . G A 2053 . AC=2;AF=0.667;AN=3;AS_AltDP=65;AS_QD=32.05;DP=134;ExcessHet=0.0000;FS=0.000;MQ=59.38;QD=32.05;SOR=1.000;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,148 1/1:0,65:65:99:.:2083,195,0:0,0,37,28 +chrX 1670071 . A G 1666 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=31.41;DP=122;ExcessHet=0.0000;FS=0.000;MQ=59.25;QD=31.41;SOR=0.931;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,148 1/1:0,54:54:99:.:1696,161,0:0,0,24,30 +chrX 1670306 . A G 2029 . AC=2;AF=0.667;AN=3;AS_AltDP=64;AS_QD=32.17;DP=132;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.17;SOR=1.127;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,148 1/1:0,64:64:99:.:2059,191,0:0,0,38,26 +chrX 1670481 . T A 1770 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=31.03;DP=127;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.03;SOR=0.997;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,148 1/1:0,58:58:99:.:1800,174,0:0,0,33,25 +chrX 1670620 . A ATTT 596.97 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=18.17;BaseQRankSum=-1.687;DP=128;ExcessHet=0.0000;FS=89.214;MQ=55.98;MQRankSum=0.302;QD=18.17;ReadPosRankSum=-2.578;SOR=6.356;VarDP=35 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:65:99:65:.:.:0,148 0|1:12,23:35:99:.:0|1:1670620_A_ATTT:636,0,362:1670620:12,0,0,23 +chrX 1670646 . G T 339 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=7.85;BaseQRankSum=-0.323;DP=118;ExcessHet=0.0000;FS=72.153;MQ=54.84;MQRankSum=-1.254;QD=7.85;ReadPosRankSum=1.403;SOR=5.278;VarDP=47 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:65:99:65:.:.:0,148 0|1:34,13:47:99:.:1|0:1670620_A_ATTT:369,0,1329:1670620:5,29,13,0 +chrX 1670648 . A T 333 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=7.41;BaseQRankSum=-0.138;DP=115;ExcessHet=0.0000;FS=65.299;MQ=55.01;MQRankSum=-1.354;QD=7.41;ReadPosRankSum=1.203;SOR=5.278;VarDP=49 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:65:99:65:.:.:0,148 0|1:36,13:49:99:.:1|0:1670620_A_ATTT:363,0,1413:1670620:7,29,13,0 +chrX 1670653 . TAG T 332.97 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=8.09;BaseQRankSum=-1.393;DP=113;ExcessHet=0.0000;FS=61.182;MQ=55.24;MQRankSum=-1.552;QD=8.09;ReadPosRankSum=0.781;SOR=5.279;VarDP=46 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:65:99:65:.:.:0,148 0|1:33,13:46:99:.:1|0:1670620_A_ATTT:372,0,1333:1670620:7,26,13,0 +chrX 1670655 . G GTTTTT 332.97 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=8.09;DP=113;ExcessHet=0.0000;FS=61.182;MQ=55.24;MQRankSum=-1.552;QD=8.09;ReadPosRankSum=1.103;SOR=5.279;VarDP=46 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:65:99:65:.:.:0,148 0|1:33,13:46:99:.:1|0:1670620_A_ATTT:372,0,1333:1670620:7,26,13,0 +chrX 1670915 . G C 2087 . AC=2;AF=0.667;AN=3;AS_AltDP=65;AS_QD=32.57;DP=132;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.57;SOR=1.437;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,148 1/1:0,65:65:99:.:2117,195,0:0,0,42,23 +chrX 1670934 . A G 3608 . AC=3;AF=1.00;AN=3;AS_AltDP=119;AS_QD=30.57;DP=125;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.57;SOR=1.015;VarDP=119 GT:AD:DP:GQ:PL:SB 1:0,56:56:99:1680,0:0,0,29,27 1/1:0,63:63:99:1958,188,0:0,0,39,24 +chrX 1671324 . C T 2914 . AC=1;AF=0.333;AN=3;AS_AltDP=89;AS_QD=33.08;DP=144;ExcessHet=0.0000;FS=0.000;MQ=59.54;QD=33.08;SOR=0.965;VarDP=89 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,89:89:99:.:2944,0:0,0,50,39 0/0:.:59:25:53:0,25,978 +chrX 1671571 . A G 1833 . AC=1;AF=0.333;AN=3;AS_AltDP=60;AS_QD=31.05;DP=116;ExcessHet=0.0000;FS=0.000;MQ=59.14;QD=31.05;SOR=0.906;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,60:60:99:.:1863,0:0,0,27,33 0/0:.:59:25:53:0,25,978 +chrX 1671766 . G A 2078 . AC=1;AF=0.333;AN=3;AS_AltDP=64;AS_QD=32.43;BaseQRankSum=2.723;DP=119;ExcessHet=0.0000;FS=3.358;MQ=60.00;MQRankSum=0;QD=32.43;ReadPosRankSum=0.72;SOR=0.525;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,64:65:99:.:2108,0:1,0,29,35 0/0:.:59:25:53:0,25,978 +chrX 1672055 . C G 1831 . AC=1;AF=0.333;AN=3;AS_AltDP=56;AS_QD=33.23;DP=112;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.23;SOR=1.199;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,56:56:99:.:1861,0:0,0,34,22 0/0:.:59:25:53:0,25,978 +chrX 1672556 . GTC G 1761.97 . AC=1;AF=0.333;AN=3;AS_AltDP=45;AS_QD=29.04;DP=118;ExcessHet=0.0000;FS=0.000;MQ=59.74;QD=40.02;SOR=1.714;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,45:45:99:.:1801,0:0,0,31,14 0/0:.:59:25:53:0,25,978 +chrX 1672570 . C CTGTG 2315.97 . AC=1;AF=0.333;AN=3;AS_AltDP=55;AS_QD=37.95;DP=116;ExcessHet=0.0000;FS=0.000;MQ=59.73;QD=42.82;SOR=1.666;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,55:55:99:.:2355,0:0,0,28,13 0/0:.:59:25:53:0,25,978 +chrX 1673390 . T C 1836 . AC=1;AF=0.333;AN=3;AS_AltDP=56;AS_QD=33.32;DP=111;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.32;SOR=1.009;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,56:56:99:.:1866,0:0,0,32,24 0/0:.:59:25:53:0,25,978 +chrX 1674196 . C CTTT 1499.97 . AC=1;AF=0.333;AN=3;AS_AltDP=40;AS_QD=29.46;BaseQRankSum=2.266;DP=107;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=37.54;ReadPosRankSum=-0.042;SOR=0.223;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,40:41:99:.:1539,0:0,1,20,20 0/0:.:59:25:53:0,25,978 +chrX 1675440 . A G 1626 . AC=1;AF=0.333;AN=3;AS_AltDP=54;AS_QD=30.67;DP=109;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.67;SOR=0.693;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,54:54:99:.:1656,0:0,0,27,27 0/0:.:59:25:53:0,25,978 +chrX 1675609 . G GTGTATATA 1801.97 . AC=1;AF=0.333;AN=3;AS_AltDP=44;AS_QD=28.91;DP=101;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=41.84;SOR=0.784;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,44:44:99:.:1841,0:0,0,21,23 0/0:.:59:25:53:0,25,978 +chrX 1675709 . C T 146 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=4.09;BaseQRankSum=1.385;DP=97;ExcessHet=0.0000;FS=2.696;MQ=59.40;MQRankSum=0;QD=4.09;ReadPosRankSum=-1.243;SOR=0.324;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 1:20,23:43:99:.:176,0:7,13,11,12 0/0:.:59:25:53:0,25,978 +chrX 1675714 . CT C 86.97 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=2.80;BaseQRankSum=-1.554;DP=100;ExcessHet=0.0000;FS=2.597;MQ=59.08;MQRankSum=1.067;QD=2.80;ReadPosRankSum=-0.013;SOR=0.352;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 1:22,23:45:99:.:126,0:8,14,11,12 0/0:.:59:25:53:0,25,978 +chrX 1675912 . G A 1916 . AC=1;AF=0.333;AN=3;AS_AltDP=59;AS_QD=32.98;DP=114;ExcessHet=0.0000;FS=0.000;MQ=59.57;QD=32.98;SOR=1.034;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,59:59:99:.:1946,0:0,0,34,25 0/0:.:59:25:53:0,25,978 +chrX 1676370 . GTATATATA G,GTATATATATATA,GTATATATATATATA 1377.97 . AC=1,0,0;AF=0.333,0.00,0.00;AN=3;AS_AltDP=37,14,1;AS_QD=26.88,29.14,28.70;BaseQRankSum=-0.522;DP=123;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=26.74;ReadPosRankSum=-0.654;SOR=0.290;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,37,14,1:53:99:.:1417,0,725,1091:0,1,24,28 0/0:.:59:25:53:0,25,978,25,978,978,25,978,978,978 +chrX 1676536 . C A 2251 . AC=1;AF=0.333;AN=3;AS_AltDP=60;AS_QD=30.27;DP=115;ExcessHet=0.0000;FS=0.000;MQ=59.92;QD=38.02;SOR=0.906;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,60:60:99:.:2281,0:0,0,27,33 0/0:.:59:25:53:0,25,978 +chrX 1676639 . G A 254 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=4.73;BaseQRankSum=-1.03;DP=114;ExcessHet=0.0000;FS=2.208;MQ=59.49;MQRankSum=0.33;QD=4.73;ReadPosRankSum=-1.621;SOR=0.950;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 1:25,35:60:99:.:284,0:13,12,15,20 0/0:.:59:25:53:0,25,978 +chrX 1676663 . T G 546 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=11.52;BaseQRankSum=0.15;DP=112;ExcessHet=0.0000;FS=5.964;MQ=59.84;MQRankSum=0.927;QD=11.52;ReadPosRankSum=-0.606;SOR=0.549;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,140 0/1:28,22:50:99:.:576,0,792:18,10,10,12 +chrX 1676726 . G A 751 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=16.98;BaseQRankSum=1.394;DP=105;ExcessHet=0.0000;FS=0.000;MQ=59.94;MQRankSum=-0.795;QD=16.98;ReadPosRankSum=0.647;SOR=0.862;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,140 0/1:19,27:46:99:.:781,0,465:12,7,18,9 +chrX 1676997 . G A 1222 . AC=2;AF=0.667;AN=3;AS_AltDP=69;AS_QD=10.79;BaseQRankSum=1.816;DP=122;ExcessHet=0.0000;FS=3.464;MQ=60.00;MQRankSum=0;QD=10.79;ReadPosRankSum=0.875;SOR=0.819;VarDP=116 GT:AD:DP:GQ:PL:SB 1:28,36:64:99:303,0:15,13,21,15 0/1:19,33:52:99:949,0,414:7,12,17,16 +chrX 1677029 . A G 1004 . AC=2;AF=0.667;AN=3;AS_AltDP=66;AS_QD=8.84;BaseQRankSum=-0.569;DP=121;ExcessHet=0.0000;FS=1.485;MQ=60.00;MQRankSum=0;QD=8.84;ReadPosRankSum=0.378;SOR=0.653;VarDP=117 GT:AD:DP:GQ:PL:SB 1:25,32:57:99:173,0:11,14,17,15 0/1:26,34:60:99:861,0,704:13,13,17,17 +chrX 1677446 . C CT,CTT,T 809 . AC=2,1,0;AF=0.667,0.333,0.00;AN=3;AS_AltDP=27,12,0;AS_QD=29.39,31.34,0.00;BaseQRankSum=-0.443;DP=81;ExcessHet=0.0000;FS=0.000;MQ=58.37;MQRankSum=0;QD=20.98;ReadPosRankSum=1.132;SOR=0.657;VarDP=40 GT:AD:DP:GQ:PL:SB 2:1,10,12,0:23:16:496,16,0,372:0,1,5,17 1/1:0,17,0,0:17:52:343,52,0,421,103,720,424,102,798,1096:0,0,8,9 +chrX 1677616 . C T 3125 . AC=3;AF=1.00;AN=3;AS_AltDP=96;AS_QD=32.86;DP=98;ExcessHet=0.0000;FS=0.000;MQ=59.94;QD=32.86;SOR=0.693;VarDP=96 GT:AD:DP:GQ:PL:SB 1:0,46:46:99:1509,0:0,0,25,21 1/1:0,50:50:99:1646,150,0:0,0,23,27 +chrX 1677717 . G A 1840 . AC=3;AF=1.00;AN=3;AS_AltDP=80;AS_QD=18.33;BaseQRankSum=-0.694;DP=107;ExcessHet=0.0000;FS=1.998;MQ=60.00;MQRankSum=0;QD=18.33;ReadPosRankSum=1.762;SOR=0.446;VarDP=102 GT:AD:DP:GQ:PL:SB 1:22,33:55:99:342,0:13,9,18,15 1/1:0,47:47:99:1528,141,0:0,0,23,24 +chrX 1678026 . T C 2547 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=29.31;DP=128;ExcessHet=0.0000;FS=0.000;MQ=59.94;QD=43.68;SOR=0.871;VarDP=59 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:67:24:66:.:.:0,24 1|1:0,59:59:99:.:0|1:1678026_T_C:2577,177,0:1678026:0,0,32,27 +chrX 1678035 . T C 2561 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=27.29;DP=127;ExcessHet=0.0000;FS=0.000;MQ=59.71;QD=43.92;SOR=0.726;VarDP=59 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:67:24:66:.:.:0,24 1|1:0,59:59:99:.:0|1:1678026_T_C:2591,178,0:1678026:0,0,30,29 +chrX 1678061 . T A 2012 . AC=2;AF=0.667;AN=3;AS_AltDP=65;AS_QD=31.42;DP=136;ExcessHet=0.0000;FS=0.000;MQ=59.80;QD=31.42;SOR=0.723;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:24:66:0,24 1/1:0,65:65:99:.:2042,194,0:0,0,33,32 +chrX 1678252 . GA G,AA 1980 . AC=1,2;AF=0.333,0.667;AN=3;AS_AltDP=24,71;AS_QD=16.92,22.04;BaseQRankSum=-0.644;DP=117;ExcessHet=0.0000;FS=4.382;MQ=59.50;MQRankSum=-0.112;QD=20.94;ReadPosRankSum=-1.61;SOR=1.220;VarDP=96 GT:AD:DP:GQ:PL:SB 1:1,24,17:42:99:423,0,514:1,0,17,24 2/2:0,0,54:54:99:1587,1587,1587,162,162,0:0,0,17,37 +chrX 1678321 . T C 3132 . AC=3;AF=1.00;AN=3;AS_AltDP=105;AS_QD=30.11;DP=108;ExcessHet=0.0000;FS=0.000;MQ=59.21;QD=30.11;SOR=0.833;VarDP=105 GT:AD:DP:GQ:PL:SB 1:0,54:54:99:1666,0:0,0,29,25 1/1:0,51:51:99:1496,150,0:0,0,20,31 +chrX 1678942 . C G 408 . AC=1;AF=0.333;AN=3;AS_AltDP=41;AS_QD=6.17;BaseQRankSum=2.007;DP=135;ExcessHet=0.0000;FS=17.481;MQ=60.00;MQRankSum=0;QD=6.17;ReadPosRankSum=0.169;SOR=1.347;VarDP=71 GT:AD:DP:GQ:MIN_DP:PL:SB 1:30,41:71:99:.:438,0:11,19,27,14 0/0:.:61:52:61:0,52,1395 +chrX 1679066 . C CGG 2595.97 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=34.45;DP=132;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.92;SOR=0.831;VarDP=60 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:71:99:71:.:.:0,1260 1|1:0,60:60:99:.:0|1:1679066_C_CGG:2635,181,0:1679066:0,0,32,28 +chrX 1679067 . A G,AG 3670 . AC=1,2;AF=0.333,0.667;AN=3;AS_AltDP=30,88;AS_QD=30.71,28.59;DP=130;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.36;SOR=0.798;VarDP=118 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,30,28:58:91:.:.:1065,0,91:.:0,0,30,28 2|2:0,0,60:60:99:0|1:1679066_C_CGG:2635,2635,2636,181,181,0:1679066:0,0,32,28 +chrX 1679393 . A G 1973 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=31.79;DP=127;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.79;SOR=0.859;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,214 1/1:0,63:63:99:.:2003,188,0:0,0,29,34 +chrX 1680176 . C T 70 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=1.41;BaseQRankSum=0.806;DP=137;ExcessHet=0.0000;FS=1.955;MQ=59.21;MQRankSum=-0.964;QD=1.41;ReadPosRankSum=-0.155;SOR=0.885;VarDP=71 GT:AD:DP:GQ:MIN_DP:PL:SB 1:35,36:71:99:.:100,0:17,18,20,16 0/0:.:64:76:64:0,76,1397 +chrX 1680503 . C T 1892 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=33.72;DP=131;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.72;SOR=0.728;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:70:99:70:0,517 1/1:0,57:57:99:.:1922,171,0:0,0,29,28 +chrX 1680630 . G C 1743 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=31.66;DP=127;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.66;SOR=1.009;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:70:99:70:0,517 1/1:0,56:56:99:.:1773,167,0:0,0,24,32 +chrX 1681022 . A G 608 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=9.52;BaseQRankSum=-0.038;DP=142;ExcessHet=0.0000;FS=3.358;MQ=59.73;MQRankSum=0;QD=9.52;ReadPosRankSum=1.12;SOR=0.672;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:70:99:70:0,517 0/1:41,26:67:99:.:638,0,1142:18,23,14,12 +chrX 1681124 . C CA 6430.97 . AC=3;AF=1.00;AN=3;AS_AltDP=144;AS_QD=31.19;DP=144;ExcessHet=0.0000;FS=0.000;MQ=59.93;QD=44.93;SOR=0.749;VarDP=144 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,83:83:99:.:.:3725,0:.:0,0,46,37 1|1:0,61:61:99:0|1:1681124_C_CA:2745,184,0:1681124:0,0,24,37 +chrX 1681127 . G A 6475 . AC=3;AF=1.00;AN=3;AS_AltDP=145;AS_QD=36.04;DP=145;ExcessHet=0.0000;FS=0.000;MQ=59.93;QD=44.86;SOR=0.735;VarDP=145 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,83:83:99:.:.:3725,0:.:0,0,46,37 1|1:0,62:62:99:0|1:1681124_C_CA:2780,187,0:1681124:0,0,25,37 +chrX 1681452 . C CT 472.97 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=9.48;BaseQRankSum=0.284;DP=126;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=9.48;ReadPosRankSum=1.524;SOR=0.653;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,119 0/1:30,24:54:99:.:512,0,682:11,19,9,15 +chrX 1681598 . TTGTCTCTCTGTCTCTC T,TTGTCTCTC 531.97 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=8,15;AS_QD=10.08,17.30;BaseQRankSum=-0.09;DP=125;ExcessHet=0.0000;FS=0.000;MQ=59.77;MQRankSum=-0.836;QD=13.93;ReadPosRankSum=-0.849;SOR=0.776;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,119,119 0/2:18,8,15:41:99:.:571,309,1188,0,426,702:9,9,12,11 +chrX 1681636 . GTCTC G 665.97 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=20.14;BaseQRankSum=1.345;DP=107;ExcessHet=0.0000;FS=1.320;MQ=60.00;MQRankSum=0;QD=20.14;ReadPosRankSum=0.127;SOR=1.038;VarDP=35 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:99:62:.:.:0,119 0|1:17,18:35:99:.:0|1:1681636_GTCTC_G:705,0,656:1681636:8,9,7,11 +chrX 1681676 . CCT C 501.97 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=19.32;BaseQRankSum=-0.229;DP=98;ExcessHet=0.0000;FS=0.000;MQ=56.12;MQRankSum=-0.038;QD=19.32;ReadPosRankSum=-0.054;SOR=0.976;VarDP=28 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:99:62:.:.:0,119 0|1:14,14:28:99:.:0|1:1681636_GTCTC_G:541,0,530:1681636:7,7,6,8 +chrX 1681771 . T TTCTCTCTCTCTTTC 327.97 . AC=1;AF=0.333;AN=3;AS_AltDP=10;AS_QD=28.23;BaseQRankSum=-0.292;DP=83;ExcessHet=0.0000;FS=0.000;MQ=50.11;MQRankSum=-0.914;QD=28.23;ReadPosRankSum=1.03;SOR=1.022;VarDP=13 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,119 0/1:3,10:13:80:.:367,0,80:1,2,3,7 +chrX 1681871 . T TC 198.97 . AC=1;AF=0.333;AN=3;AS_AltDP=6;AS_QD=29.75;BaseQRankSum=0;DP=76;ExcessHet=0.0000;FS=6.021;MQ=42.73;MQRankSum=0.18;QD=29.75;ReadPosRankSum=0.319;SOR=3.912;VarDP=8 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:99:62:.:.:0,119 0|1:2,6:8:51:.:0|1:1681871_T_TC:238,0,51:1681871:1,1,0,6 +chrX 1681872 . T TTTCTC 198.97 . AC=1;AF=0.333;AN=3;AS_AltDP=6;AS_QD=29.75;BaseQRankSum=-0.619;DP=76;ExcessHet=0.0000;FS=6.021;MQ=42.73;MQRankSum=0.18;QD=29.75;ReadPosRankSum=0;SOR=3.912;VarDP=8 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:99:62:.:.:0,119 0|1:2,6:8:51:.:0|1:1681871_T_TC:238,0,51:1681871:1,1,0,6 +chrX 1682075 . GTTTCTC G 362.97 . AC=1;AF=0.333;AN=3;AS_AltDP=10;AS_QD=25.13;BaseQRankSum=2.482;DP=43;ExcessHet=0.0000;FS=0.000;MQ=52.64;MQRankSum=-1.639;QD=25.13;ReadPosRankSum=1.522;SOR=0.534;VarDP=16 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:20:35:15:0,35 0/1:6,10:16:99:.:402,0,222:4,2,6,4 +chrX 1682187 . CTG C 140.97 . AC=2;AF=0.667;AN=3;AS_AltDP=4;AS_QD=25.47;DP=41;ExcessHet=0.0000;FS=0.000;MQ=55.55;QD=45.00;SOR=1.609;VarDP=4 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:20:35:15:.:.:0,35 1|1:0,4:4:12:.:0|1:1682187_CTG_C:180,12,0:1682187:0,0,3,1 +chrX 1682191 . T C 150 . AC=2;AF=0.667;AN=3;AS_AltDP=4;AS_QD=31.86;DP=40;ExcessHet=0.0000;FS=0.000;MQ=56.46;QD=45.00;SOR=1.609;VarDP=4 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:20:35:15:.:.:0,35 1|1:0,4:4:12:.:0|1:1682187_CTG_C:180,12,0:1682187:0,0,3,1 +chrX 1682201 . C CTCTT,CTCTCTCTTTCTCTCTT 582.97 . AC=2,0;AF=0.667,0.00;AN=3;AS_AltDP=4,0;AS_QD=29.48,23.36;BaseQRankSum=1.282;DP=44;ExcessHet=0.0000;FS=3.979;MQ=56.96;MQRankSum=0;QD=124.40;ReadPosRankSum=1.282;SOR=1.447;VarDP=5 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:20:35:15:0,35,35 1/1:1,4,0:5:22:.:622,22,0,212,32,443:0,1,3,1 +chrX 1682231 . C T,CTCTCTCTCTCTCTCTCTTTT 51 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=0,2;AS_QD=0.00,3.52;BaseQRankSum=-0.95;DP=94;ExcessHet=0.0000;FS=3.132;MQ=58.30;MQRankSum=0.463;QD=3.52;ReadPosRankSum=0.382;SOR=2.147;VarDP=23 GT:AD:DP:GQ:MIN_DP:PL:SB 2:21,0,2:23:81:.:81,82,0:11,10,2,0 0/0:.:43:0:43:0,0,313,0,313,313 +chrX 1682321 . CTCTTTCTCTCTT C 626.97 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=20.18;BaseQRankSum=1.005;DP=96;ExcessHet=0.0000;FS=0.000;MQ=59.88;MQRankSum=0;QD=20.18;ReadPosRankSum=0.554;SOR=0.804;VarDP=33 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:99:56:0,1255 0/1:16,17:33:99:.:666,0,588:8,8,8,9 +chrX 1682460 . T C 664 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=12.39;BaseQRankSum=-0.156;DP=117;ExcessHet=0.0000;FS=2.354;MQ=59.76;MQRankSum=-0.964;QD=12.39;ReadPosRankSum=-0.55;SOR=0.356;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:99:56:0,1255 0/1:28,28:56:99:.:694,0,723:9,19,12,16 +chrX 1682497 . G A 2148 . AC=3;AF=1.00;AN=3;AS_AltDP=88;AS_QD=20.17;BaseQRankSum=-0.682;DP=117;ExcessHet=0.0000;FS=3.303;MQ=59.74;MQRankSum=0.251;QD=20.17;ReadPosRankSum=-1.086;SOR=0.753;VarDP=108 GT:AD:DP:GQ:PL:SB 1:20,26:46:99:184,0:11,9,13,13 1/1:0,62:62:99:1994,185,0:0,0,27,35 +chrX 1684243 . T C 3922 . AC=3;AF=1.00;AN=3;AS_AltDP=124;AS_QD=31.87;DP=128;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.87;SOR=0.793;VarDP=124 GT:AD:DP:GQ:PL:SB 1:0,64:64:99:2073,0:0,0,30,34 1/1:0,60:60:99:1879,178,0:0,0,29,31 +chrX 1684327 . C A 1044 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=16.52;BaseQRankSum=-0.117;DP=127;ExcessHet=0.0000;FS=2.058;MQ=60.00;MQRankSum=0;QD=16.52;ReadPosRankSum=-2.237;SOR=0.475;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,1388 0/1:27,38:65:99:.:1074,0,684:11,16,18,20 +chrX 1684781 . C A 698 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=7.21;BaseQRankSum=1.756;DP=105;ExcessHet=0.0000;FS=2.605;MQ=60.00;MQRankSum=0;QD=7.21;ReadPosRankSum=0.184;SOR=0.995;VarDP=101 GT:AD:DP:GQ:PL:SB 1:26,32:58:99:248,0:12,14,15,17 0/1:24,19:43:99:480,0,705:11,13,5,14 +chrX 1685001 . G A 689 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=10.89;BaseQRankSum=-0.239;DP=131;ExcessHet=0.0000;FS=3.394;MQ=41.66;MQRankSum=-0.614;QD=10.89;ReadPosRankSum=1.131;SOR=1.182;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,284 0/1:37,29:66:99:.:719,0,978:19,18,18,11 +chrX 1685113 . G A 811 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=12.55;BaseQRankSum=0.977;DP=137;ExcessHet=0.0000;FS=2.029;MQ=45.23;MQRankSum=0.165;QD=12.55;ReadPosRankSum=-0.716;SOR=0.917;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,284 0/1:35,32:67:99:.:841,0,877:18,17,14,18 +chrX 1685548 . A G 891 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=14.17;BaseQRankSum=0.157;DP=131;ExcessHet=0.0000;FS=0.942;MQ=60.00;MQRankSum=0;QD=14.17;ReadPosRankSum=0.013;SOR=0.527;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,284 0/1:31,34:65:99:.:921,0,818:17,14,17,17 +chrX 1686004 . G T 426 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=10.13;BaseQRankSum=1.408;DP=112;ExcessHet=0.0000;FS=2.580;MQ=42.74;MQRankSum=-3.785;QD=10.13;ReadPosRankSum=0.972;SOR=0.598;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,284 0/1:28,17:45:99:.:456,0,793:12,16,9,8 +chrX 1686635 . C T 1066 . AC=2;AF=0.667;AN=3;AS_AltDP=66;AS_QD=9.06;BaseQRankSum=1.348;DP=124;ExcessHet=0.0000;FS=3.308;MQ=59.90;MQRankSum=1.093;QD=9.06;ReadPosRankSum=2.074;SOR=0.678;VarDP=121 GT:AD:DP:GQ:PL:SB 1:29,37:66:99:293,0:13,16,19,18 0/1:26,29:55:99:803,0,673:12,14,16,13 +chrX 1686687 . T C 984 . AC=2;AF=0.667;AN=3;AS_AltDP=65;AS_QD=8.59;BaseQRankSum=-0.984;DP=121;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=8.59;ReadPosRankSum=0.073;SOR=0.721;VarDP=118 GT:AD:DP:GQ:PL:SB 1:26,35:61:99:237,0:14,12,19,16 0/1:27,30:57:99:777,0,708:15,12,17,13 +chrX 1687285 . T TAAAAAAAAA,TAAAAAAAAAA 784.97 . AC=3,0;AF=1.00,0.00;AN=3;AS_AltDP=19,1;AS_QD=24.24,2.88;BaseQRankSum=-1.085;DP=65;ExcessHet=0.0000;FS=0.000;MQ=58.38;MQRankSum=-2.087;QD=23.54;ReadPosRankSum=0.474;SOR=0.582;VarDP=35 GT:AD:DP:GQ:PL:SB 1:15,2,1:18:19:65,0,19:7,8,2,1 1/1:0,17,0:17:51:759,51,0,760,51,760:0,0,8,9 +chrX 1687494 . T C 342 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=13.29;BaseQRankSum=-2.214;DP=72;ExcessHet=0.0000;FS=0.000;MQ=58.41;MQRankSum=-0.343;QD=13.29;ReadPosRankSum=1.406;SOR=0.941;VarDP=28 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:57:20:42:0,20 0/1:13,15:28:99:.:372,0,368:7,6,9,6 +chrX 1687579 . C CAAAAA,CAAAAAA,CAAAAAAA,CAAAAAAAA 1028.97 . AC=0,1,1,0;AF=0.00,0.333,0.333,0.00;AN=3;AS_AltDP=0,7,2,0;AS_QD=29.60,31.50,35.55,32.63;DP=74;ExcessHet=0.0000;FS=0.000;MQ=56.82;QD=118.67;SOR=2.093;VarDP=9 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:57:20:42:0,20,20,20,20 2/3:0,0,7,2,0:9:65:.:1068,574,511,143,125,68,165,142,0,90,532,338,65,141,468:0,0,7,2 +chrX 1687593 . A AT 271.97 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=7.23;BaseQRankSum=-0.23;DP=75;ExcessHet=0.0000;FS=2.661;MQ=58.74;MQRankSum=2.717;QD=7.23;ReadPosRankSum=-1.596;SOR=0.382;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 1:16,27:43:99:.:311,0:6,10,13,14 0/0:.:30:63:30:0,63,909 +chrX 1687599 . C A 475 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=15.30;BaseQRankSum=0.324;DP=95;ExcessHet=0.0000;FS=1.453;MQ=57.40;MQRankSum=-1.551;QD=15.30;ReadPosRankSum=-1.498;SOR=1.230;VarDP=33 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:99:56:0,158 0/1:12,21:33:99:.:505,0,241:6,6,13,8 +chrX 1687637 . A G 1111 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=22.37;BaseQRankSum=0.377;DP=108;ExcessHet=0.0000;FS=0.000;MQ=58.95;MQRankSum=-1.516;QD=22.37;ReadPosRankSum=0.19;SOR=0.824;VarDP=51 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:56:99:56:.:.:0,158 0|1:22,29:51:99:.:0|1:1687637_A_G:1141,0,826:1687637:13,9,18,11 +chrX 1687651 . G A 1289 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=23.98;BaseQRankSum=3.18;DP=112;ExcessHet=0.0000;FS=0.000;MQ=59.13;MQRankSum=-1.419;QD=23.98;ReadPosRankSum=-0.507;SOR=0.765;VarDP=55 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:56:99:56:.:.:0,158 0|1:22,33:55:99:.:0|1:1687637_A_G:1319,0,824:1687637:13,9,20,13 +chrX 1687655 . A G 1247 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=23.65;BaseQRankSum=-0.217;DP=111;ExcessHet=0.0000;FS=0.000;MQ=59.11;MQRankSum=-1.441;QD=23.65;ReadPosRankSum=-0.569;SOR=0.846;VarDP=54 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:56:99:56:.:.:0,158 0|1:22,32:54:99:.:0|1:1687637_A_G:1277,0,827:1687637:13,9,20,12 +chrX 1687804 . A G 816 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=6.31;BaseQRankSum=0.807;DP=144;ExcessHet=0.0000;FS=0.000;MQ=59.77;MQRankSum=0;QD=6.31;ReadPosRankSum=1.552;SOR=0.641;VarDP=134 GT:AD:DP:GQ:PL:SB 1:29,33:62:99:144,0:12,17,14,19 0/1:43,29:72:99:702,0,1238:25,18,17,12 +chrX 1688102 . T G 2748 . AC=3;AF=1.00;AN=3;AS_AltDP=105;AS_QD=22.05;BaseQRankSum=2.731;DP=135;ExcessHet=0.0000;FS=1.925;MQ=60.00;MQRankSum=0;QD=22.05;ReadPosRankSum=2.069;SOR=0.761;VarDP=126 GT:AD:DP:GQ:PL:SB 1:21,27:48:99:284,0:11,10,14,13 1/1:0,78:78:99:2494,234,0:0,0,35,43 +chrX 1688173 . T A 1145 . AC=1;AF=0.333;AN=3;AS_AltDP=42;AS_QD=15.88;BaseQRankSum=-1.142;DP=145;ExcessHet=0.0000;FS=3.171;MQ=60.00;MQRankSum=0;QD=15.88;ReadPosRankSum=0.142;SOR=0.724;VarDP=74 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:70:99:70:0,1717 0/1:32,42:74:99:.:1175,0,860:14,18,23,19 +chrX 1688285 . C T 1223 . AC=2;AF=0.667;AN=3;AS_AltDP=68;AS_QD=9.71;BaseQRankSum=2.007;DP=138;ExcessHet=0.0000;FS=1.390;MQ=60.00;MQRankSum=0;QD=9.71;ReadPosRankSum=-0.861;SOR=0.830;VarDP=129 GT:AD:DP:GQ:PL:SB 1:26,37:63:99:423,0:13,13,26,11 0/1:35,31:66:99:830,0,923:20,15,13,18 +chrX 1688516 . C A 2439 . AC=3;AF=1.00;AN=3;AS_AltDP=103;AS_QD=19.60;BaseQRankSum=-0.578;DP=133;ExcessHet=0.0000;FS=0.856;MQ=60.00;MQRankSum=0;QD=19.60;ReadPosRankSum=1.08;SOR=0.591;VarDP=126 GT:AD:DP:GQ:PL:SB 1:22,35:57:99:377,0:9,13,16,19 1/1:1,68:69:99:2092,171,0:1,0,32,36 +chrX 1689117 . G A 816 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=15.67;BaseQRankSum=0.813;DP=119;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=15.67;ReadPosRankSum=-0.788;SOR=0.775;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,334 0/1:23,31:54:99:.:846,0,538:7,16,9,22 +chrX 1689187 . CAA C 969.97 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=23.47;BaseQRankSum=0.351;DP=119;ExcessHet=0.0000;FS=5.136;MQ=59.91;MQRankSum=-0.761;QD=23.47;ReadPosRankSum=-0.391;SOR=0.207;VarDP=43 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:99:63:.:.:0,334 0|1:17,26:43:99:.:0|1:1689187_CAA_C:1009,0,623:1689187:3,14,9,17 +chrX 1689197 . A T 1000 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=21.91;BaseQRankSum=-1.047;DP=113;ExcessHet=0.0000;FS=1.202;MQ=59.90;MQRankSum=-0.818;QD=21.91;ReadPosRankSum=0.614;SOR=0.459;VarDP=47 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:99:63:.:.:0,334 0|1:20,27:47:99:.:0|1:1689187_CAA_C:1030,0,697:1689187:6,14,10,17 +chrX 1689231 . C T 757 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=12.69;BaseQRankSum=2.113;DP=127;ExcessHet=0.0000;FS=3.528;MQ=58.78;MQRankSum=0.476;QD=12.69;ReadPosRankSum=2.045;SOR=0.597;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,334 0/1:34,28:62:99:.:787,0,931:20,14,13,15 +chrX 1689531 . AATTTATTTTTT A 483.97 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=10.67;BaseQRankSum=1.485;DP=123;ExcessHet=0.0000;FS=6.230;MQ=58.29;MQRankSum=0.249;QD=10.67;ReadPosRankSum=-0.407;SOR=0.184;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,334 0/1:27,22:49:99:.:523,0,993:8,19,11,11 +chrX 1689659 . T C 610 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=11.64;BaseQRankSum=0.022;DP=120;ExcessHet=0.0000;FS=1.037;MQ=51.16;MQRankSum=-0.147;QD=11.64;ReadPosRankSum=0.076;SOR=0.941;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,334 0/1:29,26:55:99:.:640,0,734:15,14,15,11 +chrX 1689818 . G A 711 . AC=2;AF=0.667;AN=3;AS_AltDP=46;AS_QD=8.42;BaseQRankSum=0.978;DP=92;ExcessHet=0.0000;FS=1.735;MQ=59.45;MQRankSum=1.423;QD=8.42;ReadPosRankSum=1.059;SOR=0.512;VarDP=88 GT:AD:DP:GQ:PL:SB 1:20,27:47:99:204,0:5,15,9,18 0/1:22,19:41:99:537,0,631:12,10,12,7 +chrX 1690094 . C T 927 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=15.19;BaseQRankSum=0.148;DP=129;ExcessHet=0.0000;FS=3.468;MQ=60.00;MQRankSum=0;QD=15.19;ReadPosRankSum=-0.263;SOR=0.677;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:99:60:0,234 0/1:28,35:63:99:.:957,0,724:12,16,19,16 +chrX 1690422 . A AAAT 930.97 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=20.21;BaseQRankSum=-1.292;DP=117;ExcessHet=0.0000;FS=6.021;MQ=60.00;MQRankSum=0;QD=20.21;ReadPosRankSum=-0.816;SOR=0.229;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:99:60:0,234 0/1:23,25:48:99:.:970,0,873:7,16,12,13 +chrX 1690711 . G GGTTTTTTTTTTTTTTTTTTTT 768.97 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=17.19;BaseQRankSum=-0.691;DP=112;ExcessHet=0.0000;FS=6.062;MQ=58.81;MQRankSum=-1.511;QD=17.19;ReadPosRankSum=-1.671;SOR=0.698;VarDP=47 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:60:99:60:.:.:0,234 0|1:24,23:47:99:.:0|1:1690711_G_GGTTTTTTTTTTTTTTTTTTTT:808,0,902:1690711:15,9,10,13 +chrX 1690715 . G T 527 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=14.28;BaseQRankSum=-0.84;DP=100;ExcessHet=0.0000;FS=2.943;MQ=58.45;MQRankSum=-2.087;QD=14.28;ReadPosRankSum=0.188;SOR=0.505;VarDP=39 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:60:99:60:.:.:0,234 0|1:24,15:39:99:.:0|1:1690711_G_GGTTTTTTTTTTTTTTTTTTTT:557,0,925:1690711:15,9,7,8 +chrX 1690893 . ATTAT A 527.97 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=17.72;BaseQRankSum=0;DP=103;ExcessHet=0.0000;FS=1.340;MQ=59.93;MQRankSum=0;QD=17.72;ReadPosRankSum=-1.682;SOR=0.976;VarDP=32 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:99:60:0,234 0/1:17,15:32:99:.:567,0,668:9,8,9,6 +chrX 1690935 . C T 558 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=11.31;BaseQRankSum=-0.301;DP=117;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=11.31;ReadPosRankSum=1.381;SOR=0.866;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:99:60:0,234 0/1:30,22:52:99:.:588,0,866:22,8,17,5 +chrX 1691468 . CAAGG C 753.97 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=16.87;BaseQRankSum=0.346;DP=109;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=16.87;ReadPosRankSum=0.525;SOR=0.820;VarDP=47 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:60:99:60:.:.:0,234 0|1:26,21:47:99:.:0|1:1691468_CAAGG_C:793,0,1029:1691468:14,12,12,9 +chrX 1691472 . G GCCTT 753.97 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=16.87;DP=107;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=16.87;ReadPosRankSum=0.342;SOR=0.820;VarDP=47 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:60:99:60:.:.:0,234 0|1:26,21:47:99:.:0|1:1691468_CAAGG_C:793,0,1029:1691468:14,12,12,9 +chrX 1692360 . A G 716 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=6.49;BaseQRankSum=-0.668;DP=115;ExcessHet=0.0000;FS=1.484;MQ=60.00;MQRankSum=0;QD=6.49;ReadPosRankSum=1.864;SOR=0.672;VarDP=115 GT:AD:DP:GQ:PL:SB 1:27,31:58:74:74,0:13,14,16,15 0/1:30,27:57:99:672,0,862:14,16,14,13 +chrX 1692396 . A G 712 . AC=2;AF=0.667;AN=3;AS_AltDP=67;AS_QD=5.54;BaseQRankSum=-1.908;DP=134;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=5.54;ReadPosRankSum=-0.294;SOR=0.693;VarDP=134 GT:AD:DP:GQ:PL:SB 1:34,37:71:9:9,0:15,19,18,19 0/1:33,30:63:99:733,0,948:16,17,13,17 +chrX 1692440 . G T 679 . AC=2;AF=0.667;AN=3;AS_AltDP=64;AS_QD=5.29;BaseQRankSum=0.214;DP=137;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=5.29;ReadPosRankSum=-0.102;SOR=0.644;VarDP=134 GT:AD:DP:GQ:PL:SB 1:36,37:73:39:39,0:20,16,22,15 0/1:34,27:61:99:670,0,898:13,21,9,18 +chrX 1692563 . C CA 1262.97 . AC=3;AF=1.00;AN=3;AS_AltDP=73;AS_QD=13.71;BaseQRankSum=-0.792;DP=108;ExcessHet=0.0000;FS=0.000;MQ=59.85;MQRankSum=0;QD=13.71;ReadPosRankSum=-0.449;SOR=0.602;VarDP=95 GT:AD:DP:GQ:PL:SB 1:22,32:54:99:246,0:13,9,17,15 1/1:0,41:41:99:1056,123,0:0,0,24,17 +chrX 1692612 . C T 1832 . AC=3;AF=1.00;AN=3;AS_AltDP=83;AS_QD=16.93;BaseQRankSum=-0.23;DP=112;ExcessHet=0.0000;FS=4.295;MQ=60.00;MQRankSum=0;QD=16.93;ReadPosRankSum=0.479;SOR=0.353;VarDP=110 GT:AD:DP:GQ:PL:SB 1:27,36:63:99:278,0:18,9,18,18 1/1:0,47:47:99:1584,141,0:0,0,28,19 +chrX 1692758 . G T 627 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=14.93;BaseQRankSum=-1.999;DP=107;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.93;ReadPosRankSum=-1.716;SOR=0.560;VarDP=44 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:61:99:61:.:.:0,221 0|1:26,18:44:99:.:0|1:1692758_G_T:657,0,1007:1692758:14,12,9,9 +chrX 1692761 . C T 606 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=14.79;BaseQRankSum=0.66;DP=105;ExcessHet=0.0000;FS=1.194;MQ=60.00;MQRankSum=0;QD=14.79;ReadPosRankSum=-1.292;SOR=0.686;VarDP=43 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:61:99:61:.:.:0,221 0|1:26,17:43:99:.:0|1:1692758_G_T:636,0,1010:1692758:14,12,8,9 +chrX 1692833 . A G 535 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=14.87;BaseQRankSum=-1.878;DP=106;ExcessHet=0.0000;FS=10.058;MQ=58.12;MQRankSum=0.883;QD=14.87;ReadPosRankSum=0.873;SOR=1.878;VarDP=38 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,221 0/1:16,22:38:99:.:565,0,432:7,9,16,6 +chrX 1692942 . T A 428 . AC=2;AF=0.667;AN=3;AS_AltDP=42;AS_QD=4.92;BaseQRankSum=0.166;DP=94;ExcessHet=0.0000;FS=1.705;MQ=59.65;MQRankSum=0.772;QD=4.92;ReadPosRankSum=0.578;SOR=0.909;VarDP=93 GT:AD:DP:GQ:PL:SB 1:24,28:52:99:125,0:11,13,10,18 0/1:27,14:41:99:333,0,815:11,16,6,8 +chrX 1693002 . AT A 2002.97 . AC=2;AF=0.667;AN=3;AS_AltDP=70;AS_QD=22.20;BaseQRankSum=-1.045;DP=101;ExcessHet=0.0000;FS=3.335;MQ=59.83;MQRankSum=0.062;QD=22.20;ReadPosRankSum=2.061;SOR=0.565;VarDP=92 GT:AD:DP:GQ:PL:SB 1:0,46:46:99:1433,0:0,0,21,25 0/1:22,24:46:99:609,0,537:13,9,12,12 +chrX 1693221 . A G 590 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=14.42;BaseQRankSum=-0.266;DP=99;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.42;ReadPosRankSum=-0.061;SOR=0.754;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:53:99:53:0,228 0/1:19,24:43:99:.:620,0,482:10,9,13,11 +chrX 1693404 . CT C 658.97 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=6.29;BaseQRankSum=-0.439;DP=133;ExcessHet=0.0000;FS=0.000;MQ=59.71;MQRankSum=-0.026;QD=6.29;ReadPosRankSum=1.061;SOR=0.633;VarDP=111 GT:AD:DP:GQ:PL:SB 1:28,27:55:3:3,0:16,12,17,10 0/1:25,31:56:99:695,0,480:15,10,16,15 +chrX 1693487 . C T 500 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=10.60;BaseQRankSum=-1.077;DP=118;ExcessHet=0.0000;FS=5.964;MQ=59.47;MQRankSum=1.295;QD=10.60;ReadPosRankSum=-0.274;SOR=0.549;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,199 0/1:28,22:50:99:.:530,0,759:18,10,10,12 +chrX 1693854 . A C 1225 . AC=2;AF=0.667;AN=3;AS_AltDP=72;AS_QD=9.30;BaseQRankSum=0.957;DP=142;ExcessHet=0.0000;FS=12.469;MQ=60.00;MQRankSum=0;QD=9.30;ReadPosRankSum=0.372;SOR=0.233;VarDP=135 GT:AD:DP:GQ:PL:SB 1:28,42:70:99:462,0:8,20,21,21 0/1:35,30:65:99:793,0,917:13,22,15,15 +chrX 1693892 . G A 1310 . AC=2;AF=0.667;AN=3;AS_AltDP=76;AS_QD=9.85;BaseQRankSum=-0.289;DP=140;ExcessHet=0.0000;FS=3.109;MQ=59.87;MQRankSum=0;QD=9.85;ReadPosRankSum=1.332;SOR=0.456;VarDP=136 GT:AD:DP:GQ:PL:SB 1:26,44:70:99:586,0:9,17,19,25 0/1:34,32:66:99:754,0,914:16,18,18,14 +chrX 1693906 . C T 1137 . AC=2;AF=0.667;AN=3;AS_AltDP=73;AS_QD=8.28;BaseQRankSum=-0.308;DP=148;ExcessHet=0.0000;FS=0.625;MQ=59.88;MQRankSum=0;QD=8.28;ReadPosRankSum=1.574;SOR=0.758;VarDP=141 GT:AD:DP:GQ:PL:SB 1:30,45:75:99:477,0:9,21,16,29 0/1:38,28:66:99:690,0,1038:20,18,14,14 +chrX 1694071 . G A 1074 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=9.60;BaseQRankSum=2.684;DP=117;ExcessHet=0.0000;FS=0.000;MQ=59.80;MQRankSum=0.053;QD=9.60;ReadPosRankSum=0.596;SOR=0.723;VarDP=115 GT:AD:DP:GQ:PL:SB 1:26,28:54:99:145,0:18,8,20,8 0/1:27,34:61:99:959,0,660:15,12,19,15 +chrX 1694601 . T G 3630 . AC=2;AF=0.667;AN=3;AS_AltDP=87;AS_QD=30.76;BaseQRankSum=1.002;DP=123;ExcessHet=0.0000;FS=0.764;MQ=59.86;MQRankSum=0;QD=30.76;ReadPosRankSum=-2.077;SOR=0.602;VarDP=119 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,56:56:99:.:.:2477,0:.:0,0,30,26 0|1:32,31:63:99:0|1:1694601_T_G:1183,0,1193:1694601:17,15,14,17 +chrX 1694606 . T C 3663 . AC=2;AF=0.667;AN=3;AS_AltDP=88;AS_QD=30.78;BaseQRankSum=-0.83;DP=121;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=30.78;ReadPosRankSum=-1.922;SOR=0.623;VarDP=120 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,56:56:99:.:.:2478,0:.:0,0,30,26 0|1:32,32:64:99:0|1:1694601_T_G:1215,0,1190:1694601:17,15,15,17 +chrX 1694792 . C G 1121 . AC=2;AF=0.667;AN=3;AS_AltDP=78;AS_QD=8.16;BaseQRankSum=-0.936;DP=145;ExcessHet=0.0000;FS=6.331;MQ=60.00;MQRankSum=0;QD=8.16;ReadPosRankSum=-0.326;SOR=1.185;VarDP=141 GT:AD:DP:GQ:PL:SB 1:34,48:82:99:345,0:17,17,31,17 0/1:29,30:59:99:806,0,786:17,12,19,11 +chrX 1694962 . T A 940 . AC=2;AF=0.667;AN=3;AS_AltDP=65;AS_QD=7.64;BaseQRankSum=0.192;DP=132;ExcessHet=0.0000;FS=8.041;MQ=60.00;MQRankSum=0;QD=7.64;ReadPosRankSum=0.094;SOR=0.842;VarDP=127 GT:AD:DP:GQ:PL:SB 1:30,33:63:99:105,0:15,15,14,19 0/1:32,32:64:99:865,0,866:20,12,14,18 +chrX 1695046 . T G 291 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=4.28;BaseQRankSum=-0.096;DP=147;ExcessHet=0.0000;FS=2.446;MQ=60.00;MQRankSum=0;QD=4.28;ReadPosRankSum=0.367;SOR=0.387;VarDP=75 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:70:99:70:0,1718 0/1:58,17:75:99:.:321,0,1670:39,19,10,7 +chrX 1695154 . T C 218 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=4.77;BaseQRankSum=-0.767;DP=126;ExcessHet=0.0000;FS=5.796;MQ=60.00;MQRankSum=0;QD=4.77;ReadPosRankSum=0.713;SOR=1.536;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 1:22,30:52:99:.:248,0:11,11,20,10 0/0:.:69:99:69:0,120,1800 +chrX 1695326 . A G 2766 . AC=2;AF=0.667;AN=3;AS_AltDP=94;AS_QD=23.11;BaseQRankSum=2.728;DP=128;ExcessHet=0.0000;FS=0.873;MQ=60.00;MQRankSum=0;QD=23.11;ReadPosRankSum=0.969;SOR=0.914;VarDP=121 GT:AD:DP:GQ:PL:SB 1:1,58:59:99:1911,0:0,1,14,44 0/1:26,36:62:99:885,0,687:10,16,17,19 +chrX 1695381 . T C 2737 . AC=2;AF=0.667;AN=3;AS_AltDP=90;AS_QD=22.87;BaseQRankSum=-1.451;DP=126;ExcessHet=0.0000;FS=0.804;MQ=60.00;MQRankSum=0;QD=22.87;ReadPosRankSum=1.746;SOR=0.543;VarDP=121 GT:AD:DP:GQ:PL:SB 1:0,61:61:99:1959,0:0,0,25,36 0/1:31,29:60:99:808,0,895:11,20,11,18 +chrX 1695394 . A G 2945 . AC=2;AF=0.667;AN=3;AS_AltDP=98;AS_QD=22.88;BaseQRankSum=-2.295;DP=136;ExcessHet=0.0000;FS=2.634;MQ=60.00;MQRankSum=0;QD=22.88;ReadPosRankSum=0.43;SOR=0.483;VarDP=130 GT:AD:DP:GQ:PL:SB 1:0,66:66:99:2122,0:0,0,29,37 0/1:32,32:64:99:853,0,920:12,20,14,18 +chrX 1695486 . T C 2228 . AC=2;AF=0.667;AN=3;AS_AltDP=76;AS_QD=20.34;BaseQRankSum=-0.41;DP=116;ExcessHet=0.0000;FS=1.650;MQ=60.00;MQRankSum=0;QD=20.34;ReadPosRankSum=-0.948;SOR=0.815;VarDP=111 GT:AD:DP:GQ:PL:SB 1:0,50:50:99:1583,0:0,0,29,21 0/1:35,26:61:99:675,0,1003:17,18,12,14 +chrX 1695848 . A G 2157 . AC=2;AF=0.667;AN=3;AS_AltDP=73;AS_QD=24.30;BaseQRankSum=1.138;DP=95;ExcessHet=0.0000;FS=2.300;MQ=60.00;MQRankSum=0;QD=24.30;ReadPosRankSum=-0.891;SOR=0.962;VarDP=90 GT:AD:DP:GQ:PL:SB 1:0,55:55:99:1676,0:0,0,30,25 0/1:17,18:35:99:511,0,456:8,9,12,6 +chrX 1695918 . C CTT 1431.97 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=22.98;BaseQRankSum=1.118;DP=96;ExcessHet=0.0000;FS=22.538;MQ=59.65;MQRankSum=-0.39;QD=22.98;ReadPosRankSum=0.228;SOR=1.442;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,38:38:99:1011,0:0,0,24,14 0/1:5,21:26:74:460,0,74:0,5,16,5 +chrX 1695972 . A C 217 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=7.48;BaseQRankSum=-0.911;DP=53;ExcessHet=0.0000;FS=1.423;MQ=59.86;MQRankSum=-0.693;QD=7.48;ReadPosRankSum=-0.225;SOR=0.561;VarDP=33 GT:AD:DP:GQ:MIN_DP:PL:SB 1:12,21:33:99:.:247,0:5,7,11,10 0/0:.:24:28:19:0,28,567 +chrX 1696118 . T C 739 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=9.15;BaseQRankSum=0.707;DP=95;ExcessHet=0.0000;FS=4.208;MQ=58.32;MQRankSum=0;QD=9.15;ReadPosRankSum=0.861;SOR=0.744;VarDP=84 GT:AD:DP:GQ:PL:SB 1:20,24:44:99:159,0:9,11,9,15 0/1:17,23:40:99:610,0,451:12,5,12,11 +chrX 1696717 . GTAATA G 626.97 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=10.57;BaseQRankSum=-2.088;DP=143;ExcessHet=0.0000;FS=7.966;MQ=57.17;MQRankSum=-1.184;QD=10.57;ReadPosRankSum=-0.451;SOR=0.368;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:57:99:57:0,1080 0/1:44,19:63:99:.:666,0,1790:14,30,10,9 +chrX 1696810 . C T 1465 . AC=2;AF=0.667;AN=3;AS_AltDP=50;AS_QD=19.93;BaseQRankSum=-1.036;DP=94;ExcessHet=0.0000;FS=23.446;MQ=51.02;MQRankSum=-4.15;QD=19.93;ReadPosRankSum=-0.481;SOR=3.360;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,34:34:99:1108,0:0,0,3,31 0/1:25,16:41:99:387,0,726:10,15,2,14 +chrX 1696897 . C G 818 . AC=2;AF=0.667;AN=3;AS_AltDP=28;AS_QD=14.13;BaseQRankSum=1.137;DP=61;ExcessHet=0.0000;FS=45.303;MQ=41.57;MQRankSum=-1.276;QD=14.13;ReadPosRankSum=0.275;SOR=6.264;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,21:21:99:722,0:0,0,0,21 0/1:32,7:39:99:126,0,905:14,18,0,7 +chrX 1698997 . G A 334 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=9.33;BaseQRankSum=2.025;DP=43;ExcessHet=0.0000;FS=5.357;MQ=42.14;MQRankSum=-2.76;QD=9.33;ReadPosRankSum=-1.462;SOR=1.863;VarDP=39 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:12:35:1:.:.:0,35 0|1:27,12:39:99:.:1|0:1698985_GTAATA_G:364,0,1057:1698985:13,14,3,9 +chrX 1699011 . C T 225 . AC=1;AF=0.333;AN=3;AS_AltDP=8;AS_QD=7.29;BaseQRankSum=1.744;DP=36;ExcessHet=0.0000;FS=1.547;MQ=44.85;MQRankSum=-2.274;QD=7.29;ReadPosRankSum=-1.985;SOR=1.085;VarDP=35 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:12:35:1:.:.:0,35 0|1:27,8:35:99:.:1|0:1698985_GTAATA_G:255,0,1110:1698985:13,14,3,5 +chrX 1699012 . A G 225 . AC=1;AF=0.333;AN=3;AS_AltDP=8;AS_QD=7.29;BaseQRankSum=0.27;DP=36;ExcessHet=0.0000;FS=1.547;MQ=44.85;MQRankSum=-2.274;QD=7.29;ReadPosRankSum=-2.122;SOR=1.085;VarDP=35 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:12:35:1:.:.:0,35 0|1:27,8:35:99:.:1|0:1698985_GTAATA_G:255,0,1110:1698985:13,14,3,5 +chrX 1699137 . A C 861 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=15.36;BaseQRankSum=-0.272;DP=125;ExcessHet=0.0000;FS=1.019;MQ=57.48;MQRankSum=-3.363;QD=15.36;ReadPosRankSum=1.745;SOR=0.514;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:12:65:0,12 0/1:24,34:58:99:.:891,0,624:14,10,18,16 +chrX 1699176 . C G 1282 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=23.02;BaseQRankSum=-0.273;DP=126;ExcessHet=0.0000;FS=1.037;MQ=58.25;MQRankSum=-2.464;QD=23.02;ReadPosRankSum=0.73;SOR=0.481;VarDP=57 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:66:99:66:.:.:0,139 0|1:23,34:57:99:.:0|1:1699176_C_G:1312,0,796:1699176:13,10,17,17 +chrX 1699190 . G C 1437 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=24.45;BaseQRankSum=-0.217;DP=129;ExcessHet=0.0000;FS=1.007;MQ=58.39;MQRankSum=-2.105;QD=24.45;ReadPosRankSum=-0.22;SOR=0.540;VarDP=60 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:66:99:66:.:.:0,139 0|1:22,38:60:99:.:0|1:1699176_C_G:1467,0,777:1699176:12,10,19,19 +chrX 1700528 . T A 2573 . AC=2;AF=0.667;AN=3;AS_AltDP=90;AS_QD=21.87;BaseQRankSum=-0.333;DP=124;ExcessHet=0.0000;FS=0.000;MQ=59.84;MQRankSum=0;QD=21.87;ReadPosRankSum=0.599;SOR=0.631;VarDP=119 GT:AD:DP:GQ:PL:SB 1:0,64:64:99:1968,0:0,0,32,32 0/1:29,26:55:99:635,0,718:14,15,13,13 +chrX 1701065 . G A 570 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=5.83;BaseQRankSum=1.986;DP=109;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=5.83;ReadPosRankSum=0.722;SOR=0.678;VarDP=103 GT:AD:DP:GQ:PL:SB 1:27,29:56:99:145,0:12,15,15,14 0/1:29,18:47:99:455,0,842:18,11,10,8 +chrX 1701094 . G GTT,T 567 . AC=2,0;AF=0.667,0.00;AN=3;AS_AltDP=35,5;AS_QD=10.47,0.89;BaseQRankSum=1.363;DP=118;ExcessHet=0.0000;FS=14.782;MQ=59.07;MQRankSum=-1.114;QD=9.63;ReadPosRankSum=-1.589;SOR=0.666;VarDP=62 GT:AD:DP:GQ:PL:SB 1:10,24,0:34:99:333,0,629:1,9,15,9 0/1:12,11,5:28:99:264,0,284,240,247,1304:5,7,8,8 +chrX 1701382 . GC G 1041.97 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=17.16;BaseQRankSum=-1.145;DP=120;ExcessHet=0.0000;FS=5.123;MQ=59.60;MQRankSum=0;QD=17.16;ReadPosRankSum=-0.635;SOR=0.264;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:57:33:55:0,33 0/1:29,34:63:99:.:1081,0,894:19,10,17,17 +chrX 1701640 . A AGTGGCCTCTGCCAGGTGTCTCCAGTGTTGATGACTCAGCGGAG 1146.97 . AC=2;AF=0.667;AN=3;AS_AltDP=46;AS_QD=17.70;BaseQRankSum=1.809;DP=134;ExcessHet=0.0000;FS=3.706;MQ=57.70;MQRankSum=0.346;QD=17.70;ReadPosRankSum=-2.039;SOR=1.154;VarDP=67 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:12,28:40:99:.:.:651,0:.:8,4,8,20 0|1:9,18:27:99:0|1:1701640_A_AGTGGCCTCTGCCAGGTGTCTCCAGTGTTGATGACTCAGCGGAG:535,0,301:1701640:3,6,10,8 +chrX 1701665 . C T 276 . AC=1;AF=0.333;AN=3;AS_AltDP=10;AS_QD=8.05;BaseQRankSum=1.176;DP=93;ExcessHet=0.0000;FS=3.368;MQ=57.90;MQRankSum=-0.964;QD=8.05;ReadPosRankSum=3.832;SOR=1.609;VarDP=38 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:51:99:51:.:.:0,203 0|1:28,10:38:99:.:1|0:1701640_A_AGTGGCCTCTGCCAGGTGTCTCCAGTGTTGATGACTCAGCGGAG:306,0,934:1701640:14,14,3,7 +chrX 1701679 . C CGGAGGTGGCCTCTGCCAGGTGTCTCCAGCATTGATG 281.97 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=8.23;BaseQRankSum=1.27;DP=91;ExcessHet=0.0000;FS=5.357;MQ=58.27;MQRankSum=-1.878;QD=8.23;ReadPosRankSum=1.509;SOR=1.863;VarDP=39 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:51:99:51:.:.:0,203 0|1:27,12:39:99:.:1|0:1701640_A_AGTGGCCTCTGCCAGGTGTCTCCAGTGTTGATGACTCAGCGGAG:321,0,949:1701640:13,14,3,9 +chrX 1701681 . C CTCAGCGG 283.97 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=8.50;BaseQRankSum=1.229;DP=93;ExcessHet=0.0000;FS=7.497;MQ=58.36;MQRankSum=-1.827;QD=8.50;ReadPosRankSum=-1.005;SOR=1.981;VarDP=38 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:51:99:51:.:.:0,203 0|1:26,12:38:99:.:1|0:1701640_A_AGTGGCCTCTGCCAGGTGTCTCCAGTGTTGATGACTCAGCGGAG:323,0,918:1701640:13,13,3,9 +chrX 1702030 . G A 376 . AC=1;AF=1.00;AN=1;AS_AltDP=12;AS_QD=31.23;BaseQRankSum=-0.491;DP=23;ExcessHet=0.0000;FS=0.000;MQ=34.36;MQRankSum=-0.134;QD=31.23;ReadPosRankSum=-0.535;SOR=0.368;VarDP=13 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,12:13:99:.:406,0:1,0,7,5 ./.:.:10:0:10:0,0,0 +chrX 1702038 . T C 322 . AC=1;AF=1.00;AN=1;AS_AltDP=10;AS_QD=32.00;BaseQRankSum=2.021;DP=22;ExcessHet=0.0000;FS=0.000;MQ=32.06;MQRankSum=-0.159;QD=32.00;ReadPosRankSum=0.316;SOR=0.693;VarDP=11 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,10:11:99:.:352,0:1,0,7,3 ./.:.:11:0:11:0,0,0 +chrX 1702066 . C T 249 . AC=1;AF=1.00;AN=1;AS_AltDP=9;AS_QD=19.93;BaseQRankSum=-1.198;DP=28;ExcessHet=0.0000;FS=2.363;MQ=35.14;MQRankSum=0.322;QD=19.93;ReadPosRankSum=3.481;SOR=1.609;VarDP=14 GT:AD:DP:GQ:MIN_DP:PL:SB 1:5,9:14:99:.:279,0:3,2,7,2 ./.:.:13:0:13:0,0,0 +chrX 1702169 . G C 522 . AC=2;AF=0.667;AN=3;AS_AltDP=25;AS_QD=17.81;BaseQRankSum=0.923;DP=32;ExcessHet=0.0000;FS=1.951;MQ=46.39;MQRankSum=1.426;QD=17.81;ReadPosRankSum=1.9;SOR=1.609;VarDP=31 GT:AD:DP:GQ:PL:SB 1:3,15:18:99:361,0:2,1,11,4 0/1:3,10:13:42:191,0,42:1,2,6,4 +chrX 1703719 . T A 560 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=10.93;BaseQRankSum=-1.728;DP=105;ExcessHet=0.0000;FS=5.483;MQ=58.44;MQRankSum=-2.62;QD=10.93;ReadPosRankSum=2.36;SOR=1.206;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:51:40:48:0,40 0/1:30,24:54:99:.:590,0,840:16,14,9,15 +chrX 1703759 . T TTA 1162.97 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=19.39;BaseQRankSum=0.066;DP=111;ExcessHet=0.0000;FS=0.000;MQ=59.30;MQRankSum=-2.033;QD=19.39;ReadPosRankSum=-0.07;SOR=0.824;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:51:40:48:0,40 0/1:31,31:62:99:.:1202,0,1133:14,17,13,18 +chrX 1703857 . C A 284 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=8.26;BaseQRankSum=1.592;DP=87;ExcessHet=0.0000;FS=7.684;MQ=52.57;MQRankSum=-0.052;QD=8.26;ReadPosRankSum=-0.262;SOR=1.498;VarDP=38 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:51:40:48:0,40 0/1:25,13:38:99:.:314,0,630:10,15,9,4 +chrX 1704218 . G A 412 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=10.78;BaseQRankSum=-0.103;DP=90;ExcessHet=0.0000;FS=2.709;MQ=40.62;MQRankSum=-3.463;QD=10.78;ReadPosRankSum=-0.999;SOR=0.747;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:51:40:48:0,40 0/1:23,18:41:99:.:442,0,616:13,10,8,10 +chrX 1704408 . A C 622 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=13.31;BaseQRankSum=0.094;DP=99;ExcessHet=0.0000;FS=1.093;MQ=44.59;MQRankSum=-3.109;QD=13.31;ReadPosRankSum=1.551;SOR=0.639;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:51:40:48:0,40 0/1:24,25:49:99:.:652,0,623:13,11,12,13 +chrX 1705247 . T G 276 . AC=1;AF=0.333;AN=3;AS_AltDP=9;AS_QD=9.27;BaseQRankSum=1.136;DP=82;ExcessHet=0.0000;FS=0.000;MQ=44.19;MQRankSum=-2.63;QD=9.27;ReadPosRankSum=-1.194;SOR=0.573;VarDP=33 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:51:40:48:.:.:0,40 0|1:24,9:33:99:.:0|1:1705247_T_G:306,0,970:1705247:14,10,5,4 +chrX 1705251 . C T 270 . AC=1;AF=0.333;AN=3;AS_AltDP=9;AS_QD=8.57;BaseQRankSum=-1.297;DP=84;ExcessHet=0.0000;FS=0.000;MQ=45.01;MQRankSum=-2.794;QD=8.57;ReadPosRankSum=-0.606;SOR=0.472;VarDP=35 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:51:40:48:.:.:0,40 0|1:26,9:35:99:.:0|1:1705247_T_G:300,0,1033:1705247:16,10,5,4 +chrX 1705584 . C G 881 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=13.80;BaseQRankSum=3.125;DP=115;ExcessHet=0.0000;FS=0.968;MQ=47.45;MQRankSum=-4.372;QD=13.80;ReadPosRankSum=0.911;SOR=0.930;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:51:40:48:0,40 0/1:32,34:66:99:.:911,0,794:19,13,22,12 +chrX 1706088 . G A 118 . AC=1;AF=0.333;AN=3;AS_AltDP=7;AS_QD=5.69;BaseQRankSum=1.868;DP=75;ExcessHet=0.0000;FS=0.000;MQ=41.69;MQRankSum=-2.582;QD=5.69;ReadPosRankSum=2.401;SOR=0.871;VarDP=26 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:51:40:48:0,40 0/1:19,7:26:99:.:148,0,496:10,9,3,4 +chrX 1706452 . T G 998 . AC=2;AF=0.667;AN=3;AS_AltDP=50;AS_QD=10.82;BaseQRankSum=-0.392;DP=97;ExcessHet=0.0000;FS=1.654;MQ=48.64;MQRankSum=-1.002;QD=10.82;ReadPosRankSum=0.554;SOR=0.824;VarDP=95 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:24,26:50:94:.:.:94,0:.:9,15,15,11 0|1:21,24:45:99:0|1:1706452_T_G:934,0,798:1706452:13,8,12,12 +chrX 1706453 . C T 998 . AC=2;AF=0.667;AN=3;AS_AltDP=50;AS_QD=10.82;BaseQRankSum=-0.26;DP=97;ExcessHet=0.0000;FS=1.654;MQ=48.64;MQRankSum=-1.002;QD=10.82;ReadPosRankSum=0.67;SOR=0.824;VarDP=95 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:24,26:50:94:.:.:94,0:.:9,15,15,11 0|1:21,24:45:99:0|1:1706452_T_G:934,0,798:1706452:13,8,12,12 +chrX 1706606 . A G 729 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=7.23;BaseQRankSum=1.081;DP=111;ExcessHet=0.0000;FS=9.254;MQ=52.83;MQRankSum=-3.906;QD=7.23;ReadPosRankSum=-0.351;SOR=0.741;VarDP=105 GT:AD:DP:GQ:PL:SB 1:28,29:57:80:80,0:15,13,16,13 0/1:22,26:48:99:679,0,590:5,17,15,11 +chrX 1706689 . A C 3368 . AC=3;AF=1.00;AN=3;AS_AltDP=114;AS_QD=29.81;DP=118;ExcessHet=0.0000;FS=0.000;MQ=51.42;QD=29.81;SOR=0.802;VarDP=114 GT:AD:DP:GQ:PL:SB 1:0,60:60:99:1739,0:0,0,29,31 1/1:0,54:54:99:1659,161,0:0,0,31,23 +chrX 1707110 . G GT 98.97 . AC=1;AF=0.333;AN=3;AS_AltDP=7;AS_QD=4.06;BaseQRankSum=0.836;DP=78;ExcessHet=0.0000;FS=0.000;MQ=45.46;MQRankSum=-3.146;QD=4.06;ReadPosRankSum=-0.043;SOR=0.859;VarDP=34 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:49:37:42:0,37 0/1:27,7:34:99:.:138,0,862:13,14,3,4 +chrX 1707394 . T C 462 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=10.93;BaseQRankSum=-0.381;DP=87;ExcessHet=0.0000;FS=1.143;MQ=47.28;MQRankSum=-1.017;QD=10.93;ReadPosRankSum=-0.903;SOR=0.495;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:49:37:42:0,37 0/1:25,20:45:99:.:492,0,683:14,11,10,10 +chrX 1707777 . A G 469 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=11.34;BaseQRankSum=-0.213;DP=88;ExcessHet=0.0000;FS=4.455;MQ=44.91;MQRankSum=-4.735;QD=11.34;ReadPosRankSum=0.507;SOR=1.476;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:49:37:42:0,37 0/1:24,20:44:99:.:499,0,682:13,11,14,6 +chrX 1708125 . C T 818 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=16.00;BaseQRankSum=-1.11;DP=96;ExcessHet=0.0000;FS=0.000;MQ=55.99;MQRankSum=0.381;QD=16.00;ReadPosRankSum=0.762;SOR=0.576;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:49:37:42:0,37 0/1:20,33:53:99:.:848,0,497:9,11,16,17 +chrX 1708175 . C G 659 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=15.31;BaseQRankSum=0.616;DP=88;ExcessHet=0.0000;FS=0.000;MQ=51.76;MQRankSum=1.817;QD=15.31;ReadPosRankSum=2.185;SOR=0.547;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:49:37:42:0,37 0/1:21,24:45:99:.:689,0,553:7,14,9,15 +chrX 1708415 . G T 306 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=12.92;BaseQRankSum=0.555;DP=68;ExcessHet=0.0000;FS=1.721;MQ=40.31;MQRankSum=0.494;QD=12.92;ReadPosRankSum=-2.437;SOR=0.260;VarDP=26 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:49:37:42:.:.:0,37 0|1:13,13:26:99:.:0|1:1708415_G_T:336,0,364:1708415:3,10,5,8 +chrX 1708814 . A G 464 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=8.67;BaseQRankSum=0.011;DP=99;ExcessHet=0.0000;FS=1.040;MQ=54.32;MQRankSum=-2.805;QD=8.67;ReadPosRankSum=1.01;SOR=0.693;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:49:37:42:0,37 0/1:36,21:57:99:.:494,0,965:17,19,11,10 +chrX 1708831 . G A 361 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=6.86;BaseQRankSum=-0.497;DP=103;ExcessHet=0.0000;FS=3.796;MQ=54.60;MQRankSum=4.028;QD=6.86;ReadPosRankSum=0.648;SOR=0.639;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 1:22,35:57:99:.:391,0:9,13,19,16 0/0:.:45:90:45:0,90,1232 +chrX 1709012 . G A 3498 . AC=3;AF=1.00;AN=3;AS_AltDP=80;AS_QD=31.66;DP=81;ExcessHet=0.0000;FS=0.000;MQ=35.13;QD=44.10;SOR=0.796;VarDP=80 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,41:41:99:.:.:1834,0:.:0,0,23,18 1|1:0,39:39:99:0|1:1709012_G_A:1694,117,0:1709012:0,0,19,20 +chrX 1709018 . G T 3509 . AC=3;AF=1.00;AN=3;AS_AltDP=80;AS_QD=33.59;DP=82;ExcessHet=0.0000;FS=0.000;MQ=34.79;QD=44.24;SOR=0.850;VarDP=80 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,43:43:99:.:.:1904,0:.:0,0,25,18 1|1:0,37:37:99:0|1:1709012_G_A:1635,111,0:1709012:0,0,18,19 +chrX 1709118 . G C 320 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=9.72;BaseQRankSum=0.614;DP=100;ExcessHet=0.0000;FS=0.000;MQ=35.20;MQRankSum=-0.988;QD=9.72;ReadPosRankSum=2.248;SOR=0.724;VarDP=36 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:85:63:0,85 0/1:21,15:36:99:.:350,0,518:10,11,7,8 +chrX 1709534 . C T 1005 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=15.92;BaseQRankSum=0.012;DP=129;ExcessHet=0.0000;FS=9.026;MQ=59.94;MQRankSum=-0.839;QD=15.92;ReadPosRankSum=0.239;SOR=1.802;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:85:63:0,85 0/1:28,37:65:99:.:1035,0,734:14,14,11,26 +chrX 1709602 . G A 1655 . AC=1;AF=0.333;AN=3;AS_AltDP=42;AS_QD=26.33;BaseQRankSum=-1.179;DP=128;ExcessHet=0.0000;FS=2.288;MQ=59.94;MQRankSum=-0.691;QD=26.33;ReadPosRankSum=-1.377;SOR=1.161;VarDP=64 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:85:63:.:.:0,85 0|1:22,42:64:99:.:0|1:1709602_G_A:1685,0,786:1709602:10,12,15,27 +chrX 1709609 . G C 1652 . AC=1;AF=0.333;AN=3;AS_AltDP=42;AS_QD=25.88;BaseQRankSum=-1.242;DP=128;ExcessHet=0.0000;FS=3.671;MQ=59.94;MQRankSum=-0.708;QD=25.88;ReadPosRankSum=-1.697;SOR=1.284;VarDP=65 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:85:63:.:.:0,85 0|1:23,42:65:99:.:0|1:1709602_G_A:1682,0,818:1709602:11,12,15,27 +chrX 1709634 . C T 479 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=9.79;BaseQRankSum=0.401;DP=119;ExcessHet=0.0000;FS=3.950;MQ=60.00;MQRankSum=0;QD=9.79;ReadPosRankSum=0.988;SOR=0.324;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:85:63:0,85 0/1:32,20:52:99:.:509,0,880:12,20,10,10 +chrX 1709893 . T G 740 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=7.00;BaseQRankSum=-0.412;DP=115;ExcessHet=0.0000;FS=0.000;MQ=59.85;MQRankSum=0;QD=7.00;ReadPosRankSum=-0.248;SOR=0.693;VarDP=110 GT:AD:DP:GQ:PL:SB 1:28,34:62:99:145,0:15,13,16,18 0/1:24,24:48:99:625,0,670:11,13,13,11 +chrX 1710231 . G A 894 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=15.15;BaseQRankSum=0.109;DP=131;ExcessHet=0.0000;FS=0.975;MQ=60.00;MQRankSum=0;QD=15.15;ReadPosRankSum=-0.704;SOR=0.752;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:19:68:0,19 0/1:27,34:61:99:.:924,0,691:13,14,18,16 +chrX 1710315 . T C 997 . AC=2;AF=0.667;AN=3;AS_AltDP=68;AS_QD=8.42;BaseQRankSum=-2.052;DP=124;ExcessHet=0.0000;FS=3.303;MQ=60.00;MQRankSum=0;QD=8.42;ReadPosRankSum=1.35;SOR=0.446;VarDP=122 GT:AD:DP:GQ:PL:SB 1:25,38:63:99:301,0:16,9,20,18 0/1:29,30:59:99:726,0,791:15,14,14,16 +chrX 1710616 . GATAA G 1117.97 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=20.66;BaseQRankSum=-1.127;DP=85;ExcessHet=0.0000;FS=0.995;MQ=60.00;MQRankSum=0;QD=20.66;ReadPosRankSum=0.566;SOR=0.560;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:42:26:0,42 0/1:26,30:56:99:.:1157,0,968:12,14,15,15 +chrX 1711234 . CT C 40.97 . AC=1;AF=0.333;AN=3;AS_AltDP=8;AS_QD=2.86;BaseQRankSum=-0.711;DP=83;ExcessHet=0.0000;FS=1.690;MQ=58.01;MQRankSum=-1.639;QD=2.86;ReadPosRankSum=-0.521;SOR=1.080;VarDP=28 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:42:26:0,42 0/1:20,8:28:80:.:80,0,294:11,9,3,5 +chrX 1711528 . G A 721 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=13.41;BaseQRankSum=1.547;DP=84;ExcessHet=0.0000;FS=2.274;MQ=60.00;MQRankSum=0;QD=13.41;ReadPosRankSum=-0.049;SOR=1.025;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:42:26:0,42 0/1:27,29:56:99:.:751,0,596:14,13,12,17 +chrX 1711683 . CTT C 202.97 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=7.12;BaseQRankSum=-2.068;DP=76;ExcessHet=0.0000;FS=15.933;MQ=58.77;MQRankSum=1.038;QD=7.12;ReadPosRankSum=0.153;SOR=2.436;VarDP=34 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:42:26:0,42 0/1:23,11:34:99:.:242,0,545:15,8,2,9 +chrX 1712008 . T TTC 336.97 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=14.46;BaseQRankSum=-1.347;DP=63;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.46;ReadPosRankSum=0.41;SOR=0.195;VarDP=26 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:42:26:0,42 0/1:13,13:26:99:.:376,0,386:0,13,1,12 +chrX 1712103 . CTCT C 711.97 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=17.47;BaseQRankSum=-0.171;DP=73;ExcessHet=0.0000;FS=4.388;MQ=59.53;MQRankSum=0;QD=17.47;ReadPosRankSum=-1.058;SOR=1.143;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:42:26:0,42 0/1:22,21:43:99:.:751,0,861:10,12,13,8 +chrX 1712111 . AT A,ATT 319.97 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=16,15;AS_QD=20.44,23.93;DP=79;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=11.58;SOR=1.044;VarDP=31 GT:AD:DP:GQ:MIN_DP:PL:SB 2:0,16,15:31:32:.:359,32,0:0,0,18,13 0/0:.:47:52:47:0,52,1220,52,1220,1220 +chrX 1712185 . A G 44 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=2.06;BaseQRankSum=-1.388;DP=87;ExcessHet=0.0000;FS=3.157;MQ=59.55;MQRankSum=-0.839;QD=2.06;ReadPosRankSum=0.494;SOR=1.356;VarDP=36 GT:AD:DP:GQ:MIN_DP:PL:SB 1:16,20:36:74:.:74,0:10,6,15,5 0/0:.:47:52:47:0,52,1220 +chrX 1712274 . ATTTTTTT A 219.97 . AC=1;AF=0.333;AN=3;AS_AltDP=7;AS_QD=13.63;BaseQRankSum=-1.0;DP=83;ExcessHet=0.0000;FS=4.775;MQ=57.70;MQRankSum=1.465;QD=13.63;ReadPosRankSum=0.39;SOR=2.066;VarDP=19 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:42:99:42:0,190 0/1:12,7:19:99:.:259,0,433:5,7,1,6 +chrX 1712581 . C CTTCT 4543.97 . AC=3;AF=1.00;AN=3;AS_AltDP=104;AS_QD=25.11;DP=120;ExcessHet=0.0000;FS=0.000;MQ=59.86;QD=44.07;SOR=0.813;VarDP=104 GT:AD:DP:GQ:PL:SB 1:0,55:55:99:2397,0:0,0,24,31 1/1:0,49:49:99:2186,147,0:0,0,25,24 +chrX 1712610 . TTC T 951.97 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=20.22;BaseQRankSum=0.33;DP=116;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=20.22;ReadPosRankSum=-0.825;SOR=0.765;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,1158 0/1:22,27:49:99:.:991,0,766:11,11,14,13 +chrX 1713008 . A G 825 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=7.31;BaseQRankSum=0.124;DP=121;ExcessHet=0.0000;FS=4.470;MQ=59.76;MQRankSum=0;QD=7.31;ReadPosRankSum=1.547;SOR=0.782;VarDP=117 GT:AD:DP:GQ:PL:SB 1:26,39:65:99:346,0:15,11,21,18 0/1:31,21:52:99:509,0,826:16,15,6,15 +chrX 1713081 . A C 935 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=8.69;BaseQRankSum=0.11;DP=115;ExcessHet=0.0000;FS=0.720;MQ=59.96;MQRankSum=0;QD=8.69;ReadPosRankSum=-0.555;SOR=0.785;VarDP=111 GT:AD:DP:GQ:PL:SB 1:27,36:63:99:231,0:18,9,22,14 0/1:22,26:48:99:734,0,601:11,11,16,10 +chrX 1713111 . T C 825 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=14.25;BaseQRankSum=-0.132;DP=127;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.25;ReadPosRankSum=0.712;SOR=0.628;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:99:66:0,114 0/1:28,32:60:99:.:855,0,743:18,10,20,12 +chrX 1713896 . G A 788 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=12.58;BaseQRankSum=0.727;DP=133;ExcessHet=0.0000;FS=3.459;MQ=60.00;MQRankSum=0;QD=12.58;ReadPosRankSum=-0.158;SOR=1.239;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:99:66:0,114 0/1:34,31:65:99:.:818,0,892:18,16,20,11 +chrX 1714143 . A G 1052 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=16.91;BaseQRankSum=-0.809;DP=131;ExcessHet=0.0000;FS=2.045;MQ=60.00;MQRankSum=0;QD=16.91;ReadPosRankSum=-1.349;SOR=0.976;VarDP=64 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:66:99:66:.:.:0,114 0|1:34,30:64:99:.:0|1:1714143_A_G:1082,0,1316:1714143:17,17,13,17 +chrX 1714153 . G A 1033 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=17.15;BaseQRankSum=0.879;DP=128;ExcessHet=0.0000;FS=0.962;MQ=60.00;MQRankSum=0;QD=17.15;ReadPosRankSum=-1.417;SOR=0.862;VarDP=62 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:66:99:66:.:.:0,114 0|1:34,28:62:99:.:0|1:1714143_A_G:1063,0,1343:1714143:16,18,12,16 +chrX 1714157 . A G 1033 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=17.15;BaseQRankSum=0.904;DP=128;ExcessHet=0.0000;FS=0.962;MQ=60.00;MQRankSum=0;QD=17.15;ReadPosRankSum=-1.861;SOR=0.862;VarDP=62 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:66:99:66:.:.:0,114 0|1:34,28:62:99:.:0|1:1714143_A_G:1063,0,1343:1714143:16,18,12,16 +chrX 1714245 . G T 708 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=11.35;BaseQRankSum=1.004;DP=134;ExcessHet=0.0000;FS=2.074;MQ=60.00;MQRankSum=0;QD=11.35;ReadPosRankSum=1.623;SOR=0.713;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:99:66:0,114 0/1:37,28:65:99:.:738,0,1000:20,17,13,15 +chrX 1714540 . C G 723 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=11.07;BaseQRankSum=-0.283;DP=136;ExcessHet=0.0000;FS=4.842;MQ=59.87;MQRankSum=-1.096;QD=11.07;ReadPosRankSum=0.525;SOR=0.317;VarDP=68 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:99:66:0,114 0/1:38,30:68:99:.:753,0,1037:25,13,16,14 +chrX 1714584 . T C 978 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=10.84;BaseQRankSum=-1.816;DP=100;ExcessHet=0.0000;FS=0.794;MQ=59.35;MQRankSum=1.826;QD=10.84;ReadPosRankSum=2.387;SOR=0.572;VarDP=93 GT:AD:DP:GQ:PL:SB 1:16,25:41:99:197,0:10,6,12,13 0/1:23,29:52:99:811,0,642:13,10,18,11 +chrX 1714699 . T C 1052 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=9.02;BaseQRankSum=1.361;DP=125;ExcessHet=0.0000;FS=8.884;MQ=59.83;MQRankSum=1.722;QD=9.02;ReadPosRankSum=2.07;SOR=1.454;VarDP=120 GT:AD:DP:GQ:PL:SB 1:22,31:53:99:341,0:10,12,12,19 0/1:36,31:67:99:741,0,990:15,21,6,25 +chrX 1714752 . G A 1208 . AC=2;AF=0.667;AN=3;AS_AltDP=67;AS_QD=10.40;BaseQRankSum=1.977;DP=120;ExcessHet=0.0000;FS=0.000;MQ=59.92;MQRankSum=1.193;QD=10.40;ReadPosRankSum=0.007;SOR=0.631;VarDP=119 GT:AD:DP:GQ:PL:SB 1:26,35:61:99:349,0:12,14,14,21 0/1:26,32:58:99:889,0,660:5,21,9,23 +chrX 1714769 . AAG A 90.97 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=1.94;BaseQRankSum=0.993;DP=131;ExcessHet=0.0000;FS=0.000;MQ=59.93;MQRankSum=1.076;QD=1.94;ReadPosRankSum=0.376;SOR=0.622;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 1:32,35:67:99:.:130,0:18,14,19,16 0/0:.:63:91:63:0,91,1539 +chrX 1715091 . C A 981 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=16.31;BaseQRankSum=1.604;DP=140;ExcessHet=0.0000;FS=5.208;MQ=59.93;MQRankSum=1.171;QD=16.31;ReadPosRankSum=1.051;SOR=0.269;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:73:10:73:0,10 0/1:27,35:62:99:.:1011,0,687:9,18,17,18 +chrX 1715350 . C T 504 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=10.68;BaseQRankSum=1.499;DP=117;ExcessHet=0.0000;FS=1.172;MQ=59.67;MQRankSum=-1.184;QD=10.68;ReadPosRankSum=-2.516;SOR=0.976;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:99:66:0,759 0/1:30,20:50:99:.:534,0,831:11,19,6,14 +chrX 1715389 . T C 1575 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=30.28;DP=119;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.28;SOR=1.287;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:99:66:0,759 1/1:0,53:53:99:.:1605,158,0:0,0,20,33 +chrX 1715522 . C CAAAA 1305.97 . AC=2;AF=0.667;AN=3;AS_AltDP=32;AS_QD=29.54;DP=116;ExcessHet=0.0000;FS=0.000;MQ=55.81;QD=42.03;SOR=1.284;VarDP=32 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:99:66:0,759 1/1:0,32:32:96:.:1345,96,0:0,0,20,12 +chrX 1715734 . A G 2842 . AC=2;AF=0.667;AN=3;AS_AltDP=85;AS_QD=27.09;BaseQRankSum=-1.232;DP=108;ExcessHet=0.0000;FS=0.955;MQ=59.71;MQRankSum=1.114;QD=27.09;ReadPosRankSum=0.717;SOR=0.525;VarDP=106 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,61:61:99:.:.:1989,0:.:0,0,23,38 0|1:21,24:45:99:0|1:1715734_A_G:883,0,757:1715734:7,14,10,14 +chrX 1715756 . A G 850 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=19.13;BaseQRankSum=-0.463;DP=110;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=19.13;ReadPosRankSum=0.671;SOR=0.826;VarDP=46 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:64:99:64:.:.:0,1471 0|1:22,24:46:99:.:0|1:1715734_A_G:880,0,779:1715734:8,14,8,16 +chrX 1716681 . A ATCTG 5283.97 . AC=3;AF=1.00;AN=3;AS_AltDP=119;AS_QD=33.89;DP=125;ExcessHet=0.0000;FS=0.000;MQ=59.86;QD=44.73;SOR=0.853;VarDP=119 GT:AD:DP:GQ:PL:SB 1:0,70:70:99:3139,0:0,0,42,28 1/1:0,49:49:99:2184,147,0:0,0,22,27 +chrX 1716825 . A G 598 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=11.42;BaseQRankSum=-0.796;DP=121;ExcessHet=0.0000;FS=5.435;MQ=60.00;MQRankSum=0;QD=11.42;ReadPosRankSum=-0.815;SOR=1.426;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,139 0/1:31,24:55:99:.:628,0,862:16,15,16,8 +chrX 1717353 . T G 4510 . AC=3;AF=1.00;AN=3;AS_AltDP=140;AS_QD=32.43;DP=144;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.43;SOR=1.054;VarDP=140 GT:AD:DP:GQ:PL:SB 1:0,65:65:99:2145,0:0,0,42,23 1/1:0,75:75:99:2395,224,0:0,0,39,36 +chrX 1717905 . C CT 444.97 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=5.20;BaseQRankSum=-0.148;DP=129;ExcessHet=0.0000;FS=6.673;MQ=59.54;MQRankSum=-0.62;QD=5.20;ReadPosRankSum=0.324;SOR=0.962;VarDP=93 GT:AD:DP:GQ:PL:SB 1:22,32:54:99:123,0:11,11,18,14 0/1:18,21:39:99:361,0,331:7,11,13,8 +chrX 1717930 . A C 3610 . AC=3;AF=1.00;AN=3;AS_AltDP=104;AS_QD=28.75;DP=105;ExcessHet=0.0000;FS=0.000;MQ=59.49;QD=35.00;SOR=0.732;VarDP=104 GT:AD:DP:GQ:PL:SB 1:0,59:59:99:2086,0:0,0,30,29 1/1:0,45:45:99:1554,134,0:0,0,21,24 +chrX 1718002 . G A 932 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=17.49;BaseQRankSum=-1.995;DP=124;ExcessHet=0.0000;FS=2.334;MQ=53.93;MQRankSum=0.493;QD=17.49;ReadPosRankSum=0.638;SOR=0.855;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:99:68:0,1749 0/1:19,36:55:99:.:962,0,465:10,9,16,20 +chrX 1718054 . T C 4505 . AC=3;AF=1.00;AN=3;AS_AltDP=121;AS_QD=31.47;DP=123;ExcessHet=0.0000;FS=0.000;MQ=55.91;QD=37.48;SOR=0.814;VarDP=121 GT:AD:DP:GQ:PL:SB 1:0,63:63:99:2415,0:0,0,31,32 1/1:0,58:58:99:2120,174,0:0,0,26,32 +chrX 1718057 . C G 557 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=9.95;BaseQRankSum=0.018;DP=130;ExcessHet=0.0000;FS=7.045;MQ=54.35;MQRankSum=0.663;QD=9.95;ReadPosRankSum=-0.906;SOR=0.677;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:69:99:69:0,144 0/1:34,25:59:99:.:587,0,854:13,21,14,11 +chrX 1718326 . T C 3946 . AC=3;AF=1.00;AN=3;AS_AltDP=132;AS_QD=29.89;BaseQRankSum=2.021;DP=139;ExcessHet=0.0000;FS=3.109;MQ=60.00;MQRankSum=0;QD=29.89;ReadPosRankSum=0.028;SOR=0.320;VarDP=133 GT:AD:DP:GQ:PL:SB 1:0,71:71:99:2136,0:0,0,33,38 1/1:1,61:62:99:1840,175,0:0,1,35,26 +chrX 1718376 . CATTG C 2121.97 . AC=2;AF=0.667;AN=3;AS_AltDP=48;AS_QD=25.18;DP=119;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=45.02;SOR=0.866;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:58:99:58:0,635 1/1:0,48:48:99:.:2161,145,0:0,0,26,22 +chrX 1718763 . G GTA 2603.97 . AC=2;AF=0.667;AN=3;AS_AltDP=74;AS_QD=30.03;BaseQRankSum=-0.686;DP=106;ExcessHet=0.0000;FS=11.135;MQ=59.84;MQRankSum=0;QD=30.03;ReadPosRankSum=0.611;SOR=0.741;VarDP=88 GT:AD:DP:GQ:PL:SB 1:0,51:51:99:1910,0:0,0,22,29 0/1:14,23:37:99:733,0,408:10,4,9,14 +chrX 1719223 . C G 1929 . AC=3;AF=1.00;AN=3;AS_AltDP=88;AS_QD=16.89;BaseQRankSum=-1.284;DP=123;ExcessHet=0.0000;FS=4.119;MQ=60.00;MQRankSum=0;QD=16.89;ReadPosRankSum=-1.579;SOR=0.907;VarDP=116 GT:AD:DP:GQ:PL:SB 1:28,31:59:53:53,0:15,13,15,16 1/1:0,57:57:99:1906,171,0:0,0,23,34 +chrX 1719464 . G A 610 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=12.55;BaseQRankSum=0.437;DP=119;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=12.55;ReadPosRankSum=1.161;SOR=0.656;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:99:66:0,496 0/1:27,24:51:99:.:640,0,711:11,16,10,14 +chrX 1719864 . T TCCTTCTTTC,TCCTTCCTTCTTTC 668.97 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=0,14;AS_QD=22.40,29.50;BaseQRankSum=1.562;DP=94;ExcessHet=0.0000;FS=1.569;MQ=58.61;MQRankSum=-1.759;QD=29.50;ReadPosRankSum=-1.611;SOR=0.412;VarDP=24 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:49:3:49:0,3,3 0/2:10,0,14:24:99:.:708,484,1218,0,439,370:4,6,7,7 +chrX 1719983 . T A 250 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=10.77;BaseQRankSum=1.305;DP=61;ExcessHet=0.0000;FS=3.909;MQ=59.27;MQRankSum=-1.09;QD=10.77;ReadPosRankSum=-0.286;SOR=0.217;VarDP=26 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:36:35:33:0,35 0/1:15,11:26:99:.:280,0,398:3,12,4,7 +chrX 1720038 . TTCCC T 1034.97 . AC=2;AF=0.667;AN=3;AS_AltDP=35;AS_QD=26.85;BaseQRankSum=0.571;DP=80;ExcessHet=0.0000;FS=21.779;MQ=59.72;MQRankSum=2.721;QD=26.85;ReadPosRankSum=-1.146;SOR=1.474;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:36:35:33:0,35 1/1:5,35:40:31:.:1074,31,0:5,0,11,24 +chrX 1720105 . A G 1353 . AC=3;AF=1.00;AN=3;AS_AltDP=66;AS_QD=16.08;BaseQRankSum=-1.248;DP=97;ExcessHet=0.0000;FS=0.000;MQ=59.90;MQRankSum=-1.301;QD=16.08;ReadPosRankSum=-2.546;SOR=0.811;VarDP=86 GT:AD:DP:GQ:PL:SB 1:20,23:43:59:59,0:7,13,9,14 1/1:0,43:43:99:1324,127,0:0,0,13,30 +chrX 1720166 . A T 2216 . AC=3;AF=1.00;AN=3;AS_AltDP=75;AS_QD=22.24;BaseQRankSum=1.363;DP=110;ExcessHet=0.0000;FS=1.873;MQ=59.96;MQRankSum=0;QD=22.24;ReadPosRankSum=1.182;SOR=0.717;VarDP=101 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:25,27:52:99:.:.:143,0:.:14,11,14,13 1|1:1,48:49:99:0|1:1720166_A_T:2103,102,0:1720166:0,1,21,27 +chrX 1720167 . A C 2216 . AC=3;AF=1.00;AN=3;AS_AltDP=75;AS_QD=22.24;BaseQRankSum=0.897;DP=109;ExcessHet=0.0000;FS=1.873;MQ=59.96;MQRankSum=0;QD=22.24;ReadPosRankSum=1.118;SOR=0.717;VarDP=101 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:25,27:52:99:.:.:143,0:.:14,11,14,13 1|1:1,48:49:99:0|1:1720166_A_T:2103,102,0:1720166:0,1,21,27 +chrX 1720226 . ATT A 1669.97 . AC=3;AF=1.00;AN=3;AS_AltDP=71;AS_QD=18.18;BaseQRankSum=1.767;DP=111;ExcessHet=0.0000;FS=1.979;MQ=59.92;MQRankSum=0;QD=18.18;ReadPosRankSum=0.033;SOR=0.501;VarDP=94 GT:AD:DP:GQ:PL:SB 1:22,24:46:86:86,0:15,7,15,9 1/1:1,47:48:99:1623,108,0:0,1,27,20 +chrX 1720316 . G A 1618 . AC=2;AF=0.667;AN=3;AS_AltDP=50;AS_QD=32.96;DP=110;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.96;SOR=0.952;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:57:99:57:0,106 1/1:0,50:50:99:.:1648,150,0:0,0,28,22 +chrX 1720636 . G A 723 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=7.46;BaseQRankSum=2.236;DP=108;ExcessHet=0.0000;FS=2.590;MQ=60.00;MQRankSum=0;QD=7.46;ReadPosRankSum=1.791;SOR=0.864;VarDP=101 GT:AD:DP:GQ:PL:SB 1:21,24:45:99:153,0:12,9,12,12 0/1:33,23:56:99:600,0,911:14,19,14,9 +chrX 1720665 . G A 717 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=6.67;BaseQRankSum=2.441;DP=121;ExcessHet=0.0000;FS=3.574;MQ=60.00;MQRankSum=0;QD=6.67;ReadPosRankSum=0.481;SOR=1.115;VarDP=112 GT:AD:DP:GQ:PL:SB 1:26,25:51:56:56,0:16,10,15,10 0/1:35,26:61:99:691,0,893:18,17,18,8 +chrX 1721036 . TC T 1542.97 . AC=2;AF=0.667;AN=3;AS_AltDP=46;AS_QD=34.39;DP=118;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=34.39;SOR=1.085;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:99:68:0,1575 1/1:0,46:46:99:.:1582,138,0:0,0,27,19 +chrX 1721637 . G A 1165 . AC=2;AF=0.667;AN=3;AS_AltDP=65;AS_QD=9.96;BaseQRankSum=3.508;DP=125;ExcessHet=0.0000;FS=0.697;MQ=59.87;MQRankSum=-0.875;QD=9.96;ReadPosRankSum=1.396;SOR=0.569;VarDP=120 GT:AD:DP:GQ:PL:SB 1:27,31:58:99:270,0:11,16,13,18 0/1:28,34:62:99:925,0,787:10,18,14,20 +chrX 1721808 . T C 884 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=16.32;BaseQRankSum=1.215;DP=115;ExcessHet=0.0000;FS=5.523;MQ=58.92;MQRankSum=-0.276;QD=16.32;ReadPosRankSum=-0.248;SOR=1.207;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:57:99:57:0,458 0/1:24,32:56:99:.:914,0,615:11,13,20,12 +chrX 1721916 . C T 1157 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=10.06;BaseQRankSum=2.746;DP=119;ExcessHet=0.0000;FS=0.000;MQ=59.27;MQRankSum=0.642;QD=10.06;ReadPosRankSum=1.182;SOR=0.674;VarDP=118 GT:AD:DP:GQ:PL:SB 1:21,32:53:99:358,0:9,12,16,16 0/1:35,30:65:99:829,0,842:16,19,12,18 +chrX 1722231 . T C 691 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=14.42;BaseQRankSum=1.24;DP=118;ExcessHet=0.0000;FS=1.051;MQ=60.00;MQRankSum=0;QD=14.42;ReadPosRankSum=-0.437;SOR=0.551;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,165 0/1:24,26:50:99:.:721,0,624:13,11,13,13 +chrX 1722262 . G A 633 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=14.11;BaseQRankSum=0.483;DP=115;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.11;ReadPosRankSum=-0.011;SOR=0.602;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,165 0/1:23,24:47:99:.:663,0,618:14,9,14,10 +chrX 1722871 . A ATAAATAAG 929.97 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=16.71;BaseQRankSum=1.996;DP=127;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=16.71;ReadPosRankSum=-0.68;SOR=0.719;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,165 0/1:32,26:58:99:.:969,0,1255:15,17,12,14 +chrX 1723287 . G C 878 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=7.96;BaseQRankSum=0.903;DP=117;ExcessHet=0.0000;FS=6.250;MQ=60.00;MQRankSum=0;QD=7.96;ReadPosRankSum=0;SOR=1.295;VarDP=114 GT:AD:DP:GQ:PL:SB 1:29,34:63:99:178,0:16,13,21,13 0/1:23,28:51:99:730,0,577:15,8,23,5 +chrX 1723373 . G GTAGA 1036.97 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=20.69;BaseQRankSum=1.785;DP=121;ExcessHet=0.0000;FS=5.565;MQ=60.00;MQRankSum=0;QD=20.69;ReadPosRankSum=-1.451;SOR=0.529;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:57:95:57:0,95 0/1:24,28:52:99:.:1076,0,924:9,15,15,13 +chrX 1723512 . A G 785 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=16.63;BaseQRankSum=-2.419;DP=107;ExcessHet=0.0000;FS=1.145;MQ=60.00;MQRankSum=0;QD=16.63;ReadPosRankSum=-0.257;SOR=1.017;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:57:95:57:0,95 0/1:19,30:49:99:.:815,0,513:9,10,12,18 +chrX 1723797 . TGATA T 1022.97 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=20.82;BaseQRankSum=0.32;DP=110;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=20.82;ReadPosRankSum=2.067;SOR=0.748;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:57:95:57:0,95 0/1:24,27:51:99:.:1062,0,904:13,11,15,12 +chrX 1723880 . GATAC G 748.97 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=14.07;BaseQRankSum=-0.793;DP=123;ExcessHet=0.0000;FS=3.740;MQ=60.00;MQRankSum=0;QD=14.07;ReadPosRankSum=1.846;SOR=1.015;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:57:95:57:0,95 0/1:34,22:56:99:.:788,0,1124:16,18,13,9 +chrX 1723968 . T C 599 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=10.48;BaseQRankSum=-0.643;DP=118;ExcessHet=0.0000;FS=3.626;MQ=60.00;MQRankSum=0;QD=10.48;ReadPosRankSum=0.661;SOR=0.337;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:57:95:57:0,95 0/1:33,27:60:99:.:629,0,883:12,21,13,14 +chrX 1724072 . A AATAG 991.97 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=19.83;BaseQRankSum=-1.678;DP=115;ExcessHet=0.0000;FS=2.402;MQ=59.93;MQRankSum=0;QD=19.83;ReadPosRankSum=-0.797;SOR=1.197;VarDP=52 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:57:95:57:.:.:0,95 0|1:25,27:52:99:.:0|1:1724072_A_AATAG:1031,0,969:1724072:12,13,10,17 +chrX 1724100 . T TGATA 5325.97 . AC=3;AF=1.00;AN=3;AS_AltDP=122;AS_QD=33.52;DP=123;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.98;SOR=0.693;VarDP=122 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,56:56:99:.:.:2496,0:.:0,0,27,29 1|1:0,66:66:99:0|1:1724072_A_AATAG:2869,198,0:1724072:0,0,34,32 +chrX 1724160 . C T 307 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=8.02;BaseQRankSum=0.138;DP=106;ExcessHet=0.0000;FS=15.389;MQ=60.00;MQRankSum=0;QD=8.02;ReadPosRankSum=-0.725;SOR=0.931;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 1:16,26:42:99:.:337,0:4,12,16,10 0/0:.:62:69:62:0,69,1683 +chrX 1724685 . C T 278 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=7.33;BaseQRankSum=-0.819;DP=107;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=7.33;ReadPosRankSum=-0.492;SOR=0.846;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 1:16,26:42:99:.:308,0:8,8,12,14 0/0:.:62:69:62:0,69,1683 +chrX 1724818 . C T 795 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=13.98;BaseQRankSum=0.516;DP=117;ExcessHet=0.0000;FS=3.576;MQ=60.00;MQRankSum=0;QD=13.98;ReadPosRankSum=0.288;SOR=0.958;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:58:99:58:0,1458 0/1:28,31:59:99:.:825,0,710:15,13,13,18 +chrX 1725049 . CCTGT C 1171.97 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=10.72;BaseQRankSum=0.389;DP=119;ExcessHet=0.0000;FS=4.572;MQ=60.00;MQRankSum=0;QD=10.72;ReadPosRankSum=0.663;SOR=0.801;VarDP=113 GT:AD:DP:GQ:PL:SB 1:24,32:56:99:353,0:11,13,18,14 0/1:33,24:57:99:858,0,1272:15,18,13,11 +chrX 1725326 . T A 703 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=14.10;BaseQRankSum=0.682;DP=118;ExcessHet=0.0000;FS=2.379;MQ=59.89;MQRankSum=-0.924;QD=14.10;ReadPosRankSum=0.321;SOR=1.054;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,1563 0/1:25,27:52:99:.:733,0,608:12,13,16,11 +chrX 1725524 . C T 563 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=9.27;BaseQRankSum=0.327;DP=131;ExcessHet=0.0000;FS=3.573;MQ=60.00;MQRankSum=0;QD=9.27;ReadPosRankSum=0.716;SOR=1.287;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,1563 0/1:39,25:64:99:.:593,0,999:19,20,9,16 +chrX 1725845 . G C 3774 . AC=3;AF=1.00;AN=3;AS_AltDP=112;AS_QD=33.96;DP=120;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.96;SOR=0.970;VarDP=112 GT:AD:DP:GQ:PL:SB 1:0,50:50:99:1719,0:0,0,22,28 1/1:0,62:62:99:2085,186,0:0,0,41,21 +chrX 1726018 . A G 2434 . AC=3;AF=1.00;AN=3;AS_AltDP=102;AS_QD=19.40;BaseQRankSum=0.228;DP=132;ExcessHet=0.0000;FS=4.371;MQ=60.00;MQRankSum=0;QD=19.40;ReadPosRankSum=0.642;SOR=1.189;VarDP=127 GT:AD:DP:GQ:PL:SB 1:25,29:54:99:124,0:11,14,11,18 1/1:0,73:73:99:2340,218,0:0,0,24,49 +chrX 1726033 . G C 2331 . AC=3;AF=1.00;AN=3;AS_AltDP=99;AS_QD=19.20;BaseQRankSum=-1.418;DP=130;ExcessHet=0.0000;FS=4.630;MQ=60.00;MQRankSum=0;QD=19.20;ReadPosRankSum=0.306;SOR=1.253;VarDP=123 GT:AD:DP:GQ:PL:SB 1:24,31:55:99:139,0:10,14,12,19 1/1:0,68:68:99:2222,203,0:0,0,19,49 +chrX 1726535 . G C 3056 . AC=3;AF=1.00;AN=3;AS_AltDP=93;AS_QD=33.18;DP=98;ExcessHet=0.0000;FS=0.000;MQ=55.26;QD=33.18;SOR=0.804;VarDP=93 GT:AD:DP:GQ:PL:SB 1:0,42:42:99:1393,0:0,0,17,25 1/1:0,51:51:99:1693,153,0:0,0,27,24 +chrX 1726733 . A T 757 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=13.12;BaseQRankSum=-0.479;DP=115;ExcessHet=0.0000;FS=5.267;MQ=48.35;MQRankSum=-1.005;QD=13.12;ReadPosRankSum=-0.503;SOR=0.381;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:52:99:52:0,1370 0/1:31,29:60:99:.:787,0,867:20,11,14,15 +chrX 1727126 . C T 3435 . AC=3;AF=1.00;AN=3;AS_AltDP=104;AS_QD=33.32;DP=108;ExcessHet=0.0000;FS=0.000;MQ=58.97;QD=33.32;SOR=1.257;VarDP=104 GT:AD:DP:GQ:PL:SB 1:0,40:40:99:1326,0:0,0,24,16 1/1:0,64:64:99:2139,192,0:0,0,40,24 +chrX 1727519 . T TA 2359.97 . AC=3;AF=1.00;AN=3;AS_AltDP=98;AS_QD=24.48;DP=122;ExcessHet=0.0000;FS=0.000;MQ=59.86;QD=24.48;SOR=0.914;VarDP=98 GT:AD:DP:GQ:PL:SB 1:0,51:51:99:1235,0:0,0,25,26 1/1:0,47:47:99:1164,141,0:0,0,19,28 +chrX 1728026 . A C 370 . AC=1;AF=0.500;AN=2;AS_AltDP=14;AS_QD=10.81;BaseQRankSum=2.177;DP=69;ExcessHet=0.0000;FS=5.155;MQ=57.35;MQRankSum=0.269;QD=10.81;ReadPosRankSum=0.701;SOR=0.678;VarDP=37 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB .:.:31:1:31:.:.:0,1 0|1:23,14:37:99:.:0|1:1728026_A_C:400,0,766:1728026:8,15,8,6 +chrX 1728027 . C CTTTTT,CTTTTTTTTTTT 1078.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=19,12;AS_QD=21.79,15.35;BaseQRankSum=1.271;DP=67;ExcessHet=0.0000;FS=2.843;MQ=57.74;MQRankSum=-1.083;QD=24.84;ReadPosRankSum=0.381;SOR=0.895;VarDP=45 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,19,0:19:99:.:.:719,0,720:.:0,0,8,11 0|2:14,0,12:26:99:1|0:1728026_A_C:399,442,915,0,473,437:1728026:8,6,5,7 +chrX 1728055 . TTTG T 266.97 . AC=1;AF=0.333;AN=3;AS_AltDP=10;AS_QD=9.87;BaseQRankSum=0.756;DP=55;ExcessHet=0.0000;FS=1.523;MQ=57.31;MQRankSum=0.66;QD=9.87;ReadPosRankSum=0.97;SOR=1.030;VarDP=31 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:24:99:24:.:.:0,270 0|1:21,10:31:99:.:0|1:1728026_A_C:306,0,730:1728026:10,11,6,4 +chrX 1728058 . G T,* 386 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=17,0;AS_QD=16.64,0.00;BaseQRankSum=0.561;DP=58;ExcessHet=0.0000;FS=0.000;MQ=57.15;MQRankSum=-1.189;QD=16.64;ReadPosRankSum=2.084;SOR=0.576;VarDP=25 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:8,17,0:25:99:.:.:416,0,749:.:6,2,8,9 0|2:21,0,10:31:99:0|1:1728026_A_C:306,367,1127,0,760,730:1728026:10,11,6,4 +chrX 1728060 . G A 536 . AC=2;AF=0.667;AN=3;AS_AltDP=22;AS_QD=12.58;BaseQRankSum=1.327;DP=47;ExcessHet=0.0000;FS=6.235;MQ=58.73;MQRankSum=-0.687;QD=12.58;ReadPosRankSum=2.009;SOR=0.877;VarDP=45 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:8,16:24:99:.:.:371,0:.:6,2,7,9 0|1:15,6:21:99:0|1:1728026_A_C:195,0,530:1728026:8,7,2,4 +chrX 1728876 . AT A 599.97 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=13.04;BaseQRankSum=0.117;DP=127;ExcessHet=0.0000;FS=4.018;MQ=59.63;MQRankSum=-1.639;QD=13.04;ReadPosRankSum=-1.583;SOR=1.176;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:71:99:71:0,372 0/1:23,26:49:99:.:639,0,549:12,11,10,16 +chrX 1728947 . G A 567 . AC=1;AF=0.500;AN=2;AS_AltDP=24;AS_QD=13.57;BaseQRankSum=-0.585;DP=103;ExcessHet=0.0000;FS=0.000;MQ=59.32;MQRankSum=1.229;QD=13.57;ReadPosRankSum=-1.214;SOR=0.801;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB .:.:59:0:59:0,0 0/1:20,24:44:99:.:597,0,503:8,12,9,15 +chrX 1728954 . A G 1988 . AC=2;AF=0.667;AN=3;AS_AltDP=46;AS_QD=28.22;DP=91;ExcessHet=0.0000;FS=0.000;MQ=59.35;QD=43.87;SOR=1.329;VarDP=46 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:53:24:45:.:.:0,24 1|1:0,46:46:99:.:0|1:1728954_A_G:2018,138,0:1728954:0,0,17,29 +chrX 1728962 . T C 1919 . AC=2;AF=0.667;AN=3;AS_AltDP=44;AS_QD=30.49;DP=90;ExcessHet=0.0000;FS=0.000;MQ=59.34;QD=44.30;SOR=1.364;VarDP=44 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:53:24:45:.:.:0,24 1|1:0,44:44:99:.:0|1:1728954_A_G:1949,132,0:1728954:0,0,16,28 +chrX 1728995 . G A 1796 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=32.61;DP=104;ExcessHet=0.0000;FS=0.000;MQ=59.49;QD=32.61;SOR=1.302;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:53:24:45:0,24 1/1:0,56:56:99:.:1826,168,0:0,0,21,35 +chrX 1729167 . A G 1667 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=32.63;DP=98;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.63;SOR=0.853;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:53:24:45:0,24 1/1:0,52:52:99:.:1697,155,0:0,0,24,28 +chrX 1729204 . C A 1677 . AC=2;AF=0.667;AN=3;AS_AltDP=50;AS_QD=34.14;DP=97;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=34.14;SOR=0.952;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:53:24:45:0,24 1/1:0,50:50:99:.:1707,150,0:0,0,28,22 +chrX 1729547 . GAAAA G,AAAAA 993 . AC=2,0;AF=0.667,0.00;AN=3;AS_AltDP=49,3;AS_QD=11.37,0.00;BaseQRankSum=1.474;DP=133;ExcessHet=0.0000;FS=2.781;MQ=60.00;MQRankSum=0;QD=11.00;ReadPosRankSum=0.573;SOR=1.053;VarDP=93 GT:AD:DP:GQ:PL:SB 1:23,26,0:49:99:174,0,1172:9,14,9,17 0/1:18,23,3:44:99:849,0,943,870,479,1700:10,8,11,15 +chrX 1730168 . A G 439 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=10.42;BaseQRankSum=-0.215;DP=111;ExcessHet=0.0000;FS=6.249;MQ=59.00;MQRankSum=0.399;QD=10.42;ReadPosRankSum=0.897;SOR=0.787;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:95:62:0,95 0/1:26,19:45:99:.:469,0,719:10,16,11,8 +chrX 1730340 . T C 1243 . AC=2;AF=0.667;AN=3;AS_AltDP=42;AS_QD=30.31;DP=108;ExcessHet=0.0000;FS=0.000;MQ=59.86;QD=30.31;SOR=1.005;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:95:62:0,95 1/1:0,42:42:99:.:1273,125,0:0,0,18,24 +chrX 1730679 . C G 1884 . AC=3;AF=1.00;AN=3;AS_AltDP=84;AS_QD=17.09;BaseQRankSum=1.502;DP=113;ExcessHet=0.0000;FS=0.819;MQ=60.00;MQRankSum=0;QD=17.09;ReadPosRankSum=-0.478;SOR=0.843;VarDP=112 GT:AD:DP:GQ:PL:SB 1:28,31:59:99:144,0:14,14,14,17 1/1:0,53:53:99:1770,159,0:0,0,25,28 +chrX 1730854 . T C 636 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=13.88;BaseQRankSum=0.97;DP=113;ExcessHet=0.0000;FS=1.119;MQ=60.00;MQRankSum=0;QD=13.88;ReadPosRankSum=1.579;SOR=0.595;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,1233 0/1:25,23:48:99:.:666,0,692:11,14,12,11 +chrX 1731025 . T TA,TAAA 1866.97 . AC=0,3;AF=0.00,1.00;AN=3;AS_AltDP=17,52;AS_QD=28.47,30.35;DP=88;ExcessHet=0.0000;FS=0.000;MQ=59.96;QD=27.62;SOR=0.980;VarDP=69 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 2:0,17,23:40:99:.:.:670,186,0:.:0,0,22,18 2|2:0,0,29:29:87:0|1:1731025_T_TAAA:1236,1236,1237,87,87,0:1731025:0,0,17,12 +chrX 1731048 . C T 1753 . AC=3;AF=1.00;AN=3;AS_AltDP=70;AS_QD=18.97;BaseQRankSum=2.25;DP=94;ExcessHet=0.0000;FS=0.911;MQ=59.82;MQRankSum=1.119;QD=18.97;ReadPosRankSum=0.707;SOR=0.521;VarDP=94 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:24,28:52:99:.:.:193,0:.:15,9,16,12 1|1:0,42:42:99:0|1:1731025_T_TAAA:1590,126,0:1731025:0,0,24,18 +chrX 1731217 . T C 2228 . AC=3;AF=1.00;AN=3;AS_AltDP=68;AS_QD=33.21;DP=70;ExcessHet=0.0000;FS=0.000;MQ=59.93;QD=33.21;SOR=0.814;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,43:43:99:1409,0:0,0,22,21 1/1:0,25:25:75:849,75,0:0,0,10,15 +chrX 1731279 . C G 1534 . AC=3;AF=1.00;AN=3;AS_AltDP=42;AS_QD=30.62;DP=43;ExcessHet=0.0000;FS=0.000;MQ=59.61;QD=37.24;SOR=1.005;VarDP=42 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:1042,0:0,0,15,12 1/1:0,15:15:45:522,45,0:0,0,9,6 +chrX 1731303 . GAC G 374.97 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=16.56;BaseQRankSum=1.29;DP=40;ExcessHet=0.0000;FS=1.760;MQ=59.36;MQRankSum=1.543;QD=16.56;ReadPosRankSum=0.525;SOR=1.371;VarDP=25 GT:AD:DP:GQ:MIN_DP:PL:SB 1:8,17:25:99:.:414,0:4,4,11,6 0/0:.:15:20:14:0,20,387 +chrX 1731308 . A T 384 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=16.56;BaseQRankSum=-0.495;DP=39;ExcessHet=0.0000;FS=1.760;MQ=59.33;MQRankSum=1.543;QD=16.56;ReadPosRankSum=-0.211;SOR=1.371;VarDP=25 GT:AD:DP:GQ:MIN_DP:PL:SB 1:8,17:25:99:.:414,0:4,4,11,6 0/0:.:15:20:14:0,20,387 +chrX 1731310 . CA C 455.97 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=21.52;BaseQRankSum=0;DP=37;ExcessHet=0.0000;FS=1.918;MQ=60.00;MQRankSum=0;QD=21.52;ReadPosRankSum=-0.589;SOR=1.371;VarDP=23 GT:AD:DP:GQ:MIN_DP:PL:SB 1:6,17:23:99:.:495,0:3,3,11,6 0/0:.:15:20:14:0,20,387 +chrX 1731312 . A T 510 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=24.55;BaseQRankSum=-0.707;DP=36;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=24.55;ReadPosRankSum=-0.275;SOR=0.976;VarDP=22 GT:AD:DP:GQ:MIN_DP:PL:SB 1:5,17:22:99:.:540,0:3,2,11,6 0/0:.:14:17:14:0,17,427 +chrX 1731323 . CAAAAAAAAAAAAAAAAA CAAAAAAA,C 704.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=17,12;AS_QD=7.00,11.66;BaseQRankSum=0;DP=77;ExcessHet=0.0000;FS=23.576;MQ=59.17;MQRankSum=1.167;QD=13.53;ReadPosRankSum=0.166;SOR=0.420;VarDP=55 GT:AD:DP:GQ:PL:SB 1:14,17,0:31:99:301,0,767:3,11,11,6 0/2:12,0,12:24:99:443,479,957,0,478,440:1,11,5,7 +chrX 1731360 . G T 801 . AC=2;AF=0.667;AN=3;AS_AltDP=46;AS_QD=9.23;BaseQRankSum=0.685;DP=91;ExcessHet=0.0000;FS=1.832;MQ=59.30;MQRankSum=1.323;QD=9.23;ReadPosRankSum=1.186;SOR=0.980;VarDP=90 GT:AD:DP:GQ:PL:SB 1:20,33:53:99:525,0:9,11,12,21 0/1:24,13:37:99:306,0,786:7,17,2,11 +chrX 1731617 . A G 3249 . AC=3;AF=1.00;AN=3;AS_AltDP=101;AS_QD=32.47;DP=108;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.47;SOR=0.930;VarDP=101 GT:AD:DP:GQ:PL:SB 1:0,55:55:99:1750,0:0,0,22,33 1/1:0,46:46:99:1529,138,0:0,0,23,23 +chrX 1731702 . C T 647 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=12.54;BaseQRankSum=0.779;DP=103;ExcessHet=0.0000;FS=5.379;MQ=60.00;MQRankSum=0;QD=12.54;ReadPosRankSum=1.325;SOR=1.149;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:57:45:48:0,45 0/1:28,26:54:99:.:677,0,716:13,15,16,10 +chrX 1731860 . A C 932 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=17.49;BaseQRankSum=-1.597;DP=104;ExcessHet=0.0000;FS=3.944;MQ=60.00;MQRankSum=0;QD=17.49;ReadPosRankSum=0.347;SOR=1.197;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:57:45:48:0,45 0/1:21,34:55:99:.:962,0,565:11,10,13,21 +chrX 1732194 . CTTT C 762.97 . AC=2;AF=0.667;AN=3;AS_AltDP=27;AS_QD=21.11;BaseQRankSum=-0.919;DP=80;ExcessHet=0.0000;FS=25.167;MQ=58.57;MQRankSum=1.98;QD=21.11;ReadPosRankSum=0.708;SOR=1.293;VarDP=38 GT:AD:DP:GQ:PL:SB 1:6,10:16:99:232,0:6,0,1,9 0/1:5,17:22:33:570,0,33:4,1,8,9 +chrX 1732268 . G A 2278 . AC=3;AF=1.00;AN=3;AS_AltDP=72;AS_QD=31.62;BaseQRankSum=2.354;DP=76;ExcessHet=0.0000;FS=0.000;MQ=59.41;MQRankSum=0;QD=31.62;ReadPosRankSum=0.392;SOR=0.430;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,42:42:99:1355,0:0,0,13,29 1/1:1,30:31:82:953,82,0:0,1,16,14 +chrX 1732483 . C A 795 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=12.69;BaseQRankSum=-1.156;DP=132;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=12.69;ReadPosRankSum=0.046;SOR=0.634;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,129 0/1:32,33:65:99:.:825,0,846:15,17,16,17 +chrX 1732772 . A T 1014 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=16.84;BaseQRankSum=-0.249;DP=125;ExcessHet=0.0000;FS=3.556;MQ=60.00;MQRankSum=0;QD=16.84;ReadPosRankSum=1.591;SOR=0.971;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,129 0/1:26,36:62:99:.:1044,0,687:14,12,15,21 +chrX 1733075 . C T 1007 . AC=1;AF=0.333;AN=3;AS_AltDP=39;AS_QD=15.95;BaseQRankSum=1.054;DP=128;ExcessHet=0.0000;FS=6.907;MQ=60.00;MQRankSum=0;QD=15.95;ReadPosRankSum=-1.44;SOR=0.500;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,129 0/1:26,39:65:99:.:1037,0,564:9,17,21,18 +chrX 1733286 . AG A 3348.97 . AC=3;AF=1.00;AN=3;AS_AltDP=95;AS_QD=27.17;DP=98;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=35.66;SOR=1.227;VarDP=95 GT:AD:DP:GQ:PL:SB 1:0,46:46:99:1642,0:0,0,34,12 1/1:0,49:49:99:1746,147,0:0,0,24,25 +chrX 1733501 . C CAAA,CAAAA 1269.97 . AC=0,2;AF=0.00,0.667;AN=3;AS_AltDP=1,54;AS_QD=0.00,15.22;BaseQRankSum=-0.118;DP=112;ExcessHet=0.0000;FS=0.822;MQ=60.00;MQRankSum=0;QD=15.05;ReadPosRankSum=-0.407;SOR=0.804;VarDP=87 GT:AD:DP:GQ:PL:SB 2:22,1,23:46:99:184,480,0:11,11,10,14 0/2:10,0,31:41:99:1125,1156,1576,0,420,328:5,5,16,15 +chrX 1733547 . A G 672 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=15.95;BaseQRankSum=-2.688;DP=113;ExcessHet=0.0000;FS=1.267;MQ=60.00;MQRankSum=0;QD=15.95;ReadPosRankSum=-0.353;SOR=0.636;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:99:66:0,164 0/1:14,30:44:99:.:702,0,357:8,6,14,16 +chrX 1733817 . T G 423 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=8.09;BaseQRankSum=-1.36;DP=124;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=8.09;ReadPosRankSum=-0.342;SOR=0.693;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:99:66:0,164 0/1:36,20:56:99:.:453,0,1004:18,18,10,10 +chrX 1733926 . A ATT 543.97 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=12.67;BaseQRankSum=-1.144;DP=124;ExcessHet=0.0000;FS=2.454;MQ=59.71;MQRankSum=-1.047;QD=12.67;ReadPosRankSum=1.809;SOR=0.937;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:99:66:0,164 0/1:25,21:46:99:.:583,0,718:13,12,9,12 +chrX 1733975 . G C 584 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=10.77;BaseQRankSum=1.368;DP=125;ExcessHet=0.0000;FS=2.273;MQ=59.64;MQRankSum=-1.137;QD=10.77;ReadPosRankSum=-1.196;SOR=1.012;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:99:66:0,164 0/1:33,24:57:99:.:614,0,882:17,16,10,14 +chrX 1734521 . G A 2574 . AC=2;AF=0.667;AN=3;AS_AltDP=83;AS_QD=23.46;BaseQRankSum=1.454;DP=118;ExcessHet=0.0000;FS=0.822;MQ=59.98;MQRankSum=-1.088;QD=23.46;ReadPosRankSum=-0.518;SOR=0.595;VarDP=111 GT:AD:DP:GQ:PL:SB 1:0,61:61:99:2010,0:0,0,29,32 0/1:28,22:50:99:594,0,753:13,15,13,9 +chrX 1734730 . G A 2229 . AC=2;AF=0.667;AN=3;AS_AltDP=75;AS_QD=19.14;BaseQRankSum=-0.254;DP=119;ExcessHet=0.0000;FS=2.456;MQ=59.78;MQRankSum=0.28;QD=19.14;ReadPosRankSum=1.109;SOR=0.495;VarDP=118 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:22,44:66:99:.:.:1031,0:.:12,10,24,20 0|1:21,31:52:99:0|1:1734730_G_A:1228,0,763:1734730:14,7,17,14 +chrX 1734731 . C A 2229 . AC=2;AF=0.667;AN=3;AS_AltDP=75;AS_QD=19.14;BaseQRankSum=-0.161;DP=120;ExcessHet=0.0000;FS=2.456;MQ=59.78;MQRankSum=0.28;QD=19.14;ReadPosRankSum=1.456;SOR=0.495;VarDP=118 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:22,44:66:99:.:.:1031,0:.:12,10,24,20 0|1:21,31:52:99:0|1:1734730_G_A:1228,0,763:1734730:14,7,17,14 +chrX 1735070 . TCCTCCTTCTTTCCC T 679.97 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=21.15;BaseQRankSum=1.404;DP=106;ExcessHet=0.0000;FS=5.402;MQ=59.62;MQRankSum=-0.829;QD=21.15;ReadPosRankSum=-0.384;SOR=1.781;VarDP=34 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:44:62:.:.:0,44 0|1:15,19:34:99:.:0|1:1735070_TCCTCCTTCTTTCCC_T:719,0,540:1735070:7,8,5,14 +chrX 1735118 . T C 1686 . AC=3;AF=1.00;AN=3;AS_AltDP=46;AS_QD=33.86;DP=58;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=37.30;SOR=1.931;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,20:20:99:.:.:778,0:.:0,0,5,15 1|1:0,26:26:77:0|1:1735070_TCCTCCTTCTTTCCC_T:938,77,0:1735070:0,0,8,18 +chrX 1735416 . T TCTCCCTCCTCTC 323.97 . AC=2;AF=0.667;AN=3;AS_AltDP=14;AS_QD=11.71;BaseQRankSum=0.498;DP=57;ExcessHet=0.0000;FS=1.736;MQ=60.00;MQRankSum=0;QD=11.71;ReadPosRankSum=1.085;SOR=0.296;VarDP=31 GT:AD:DP:GQ:PL:SB 1:4,9:13:99:192,0:3,1,6,3 0/1:13,5:18:99:171,0,501:11,2,4,1 +chrX 1735462 . T TCTCCTCCTTCTCC 848.97 . AC=2;AF=0.667;AN=3;AS_AltDP=22;AS_QD=31.71;BaseQRankSum=2.053;DP=57;ExcessHet=0.0000;FS=2.063;MQ=58.33;MQRankSum=-1.352;QD=31.71;ReadPosRankSum=-2.118;SOR=1.445;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,12:12:99:509,0:0,0,8,4 0/1:6,10:16:99:379,0,224:4,2,9,1 +chrX 1735468 . CTTT C 206.97 . AC=1;AF=0.333;AN=3;AS_AltDP=7;AS_QD=12.30;BaseQRankSum=-0.734;DP=47;ExcessHet=0.0000;FS=5.379;MQ=57.98;MQRankSum=1.402;QD=12.30;ReadPosRankSum=2.036;SOR=0.093;VarDP=20 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:11:99:11:.:.:0,228 0|1:13,7:20:99:.:0|1:1735468_CTTT_C:246,0,503:1735468:11,2,4,3 +chrX 1735472 . CTCCCTCCTCT C 203.97 . AC=1;AF=0.333;AN=3;AS_AltDP=7;AS_QD=11.57;BaseQRankSum=-0.14;DP=48;ExcessHet=0.0000;FS=4.506;MQ=57.45;MQRankSum=1.348;QD=11.57;ReadPosRankSum=1.67;SOR=0.160;VarDP=21 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:11:99:11:.:.:0,228 0|1:14,7:21:99:.:0|1:1735468_CTTT_C:243,0,534:1735468:11,3,4,3 +chrX 1735537 . CCT C 50.97 . AC=1;AF=0.333;AN=3;AS_AltDP=5;AS_QD=11.25;BaseQRankSum=0;DP=29;ExcessHet=0.0000;FS=7.068;MQ=56.86;MQRankSum=0;QD=11.25;ReadPosRankSum=0.157;SOR=0.610;VarDP=8 GT:AD:DP:GQ:MIN_DP:PL:SB 1:3,5:8:90:.:90,0:0,3,3,2 0/0:.:19:22:16:0,22,513 +chrX 1735557 . G A 261 . AC=2;AF=0.667;AN=3;AS_AltDP=13;AS_QD=11.19;BaseQRankSum=2.263;DP=41;ExcessHet=0.0000;FS=1.721;MQ=58.40;MQRankSum=1.006;QD=11.19;ReadPosRankSum=1.78;SOR=1.473;VarDP=26 GT:AD:DP:GQ:PL:SB 1:3,5:8:90:90,0:0,3,3,2 0/1:10,8:18:99:201,0,176:5,5,0,8 +chrX 1735677 . C CTCCT,CT 714.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=17,1;AS_QD=29.90,33.16;DP=36;ExcessHet=0.0000;FS=0.000;MQ=56.50;QD=41.89;SOR=1.863;VarDP=18 GT:AD:DP:GQ:PL:SB 1:0,11,0:11:99:495,0,495:0,0,3,8 1/2:0,6,1:7:43:259,43,107,216,0,212:0,0,2,5 +chrX 1735684 . C CCTCTTTCTCTCCCTCCTT 40.97 . AC=1;AF=0.333;AN=3;AS_AltDP=3;AS_QD=7.27;BaseQRankSum=0;DP=40;ExcessHet=0.0000;FS=12.175;MQ=56.26;MQRankSum=-0.301;QD=7.27;ReadPosRankSum=-2.362;SOR=2.784;VarDP=11 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:17:99:17:0,303 0/1:8,3:11:80:.:80,0,295:2,6,3,0 +chrX 1735700 . T TTTCTCTCCCTCCTC,* 93.97 . AC=1,0;AF=0.333,0.00;AN=3;AS_AltDP=4,0;AS_QD=19.00,0.00;BaseQRankSum=-1.068;DP=45;ExcessHet=0.0000;FS=8.451;MQ=57.25;MQRankSum=-0.18;QD=19.00;ReadPosRankSum=1.006;SOR=1.402;VarDP=7 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:25:90:25:0,90,90 0/1:3,4,0:7:99:.:133,0,199,154,139,416:3,0,1,3 +chrX 1735788 . TCTTTCTCCCTCCTC T 344.97 . AC=2;AF=0.667;AN=3;AS_AltDP=13;AS_QD=29.54;DP=44;ExcessHet=0.0000;FS=0.000;MQ=46.19;QD=29.54;SOR=1.609;VarDP=13 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:25:90:25:0,90 1/1:0,13:13:37:.:384,37,0:0,0,9,4 +chrX 1736120 . A G 3285 . AC=3;AF=1.00;AN=3;AS_AltDP=100;AS_QD=33.15;DP=109;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.15;SOR=0.733;VarDP=100 GT:AD:DP:GQ:PL:SB 1:0,48:48:99:1583,0:0,0,29,19 1/1:0,52:52:99:1732,156,0:0,0,22,30 +chrX 1736280 . G T 586 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=14.33;BaseQRankSum=0.121;DP=103;ExcessHet=0.0000;FS=4.461;MQ=60.00;MQRankSum=0;QD=14.33;ReadPosRankSum=0.766;SOR=0.250;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:99:56:0,124 0/1:21,22:43:99:.:616,0,564:14,7,11,11 +chrX 1736705 . A G 572 . AC=2;AF=0.667;AN=3;AS_AltDP=45;AS_QD=7.00;BaseQRankSum=-0.745;DP=90;ExcessHet=0.0000;FS=0.000;MQ=59.49;MQRankSum=-1.055;QD=7.00;ReadPosRankSum=0.938;SOR=0.665;VarDP=86 GT:AD:DP:GQ:PL:SB 1:19,27:46:99:117,0:11,8,20,7 0/1:22,18:40:99:485,0,634:13,9,6,12 +chrX 1736842 . G A 1035 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=8.80;BaseQRankSum=1.446;DP=124;ExcessHet=0.0000;FS=0.673;MQ=56.91;MQRankSum=-1.689;QD=8.80;ReadPosRankSum=0.107;SOR=0.790;VarDP=121 GT:AD:DP:GQ:PL:SB 1:27,27:54:25:25,0:14,13,12,15 0/1:31,36:67:99:1040,0,865:15,16,18,18 +chrX 1736926 . G T 873 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=15.31;BaseQRankSum=-0.816;DP=113;ExcessHet=0.0000;FS=2.233;MQ=51.02;MQRankSum=3.634;QD=15.31;ReadPosRankSum=-0.703;SOR=0.385;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:53:45:53:0,45 0/1:26,33:59:99:.:903,0,981:16,10,17,16 +chrX 1736932 . T C 634 . AC=1;AF=0.500;AN=2;AS_AltDP=25;AS_QD=11.86;BaseQRankSum=0.652;DP=113;ExcessHet=0.0000;FS=5.411;MQ=50.47;MQRankSum=-3.648;QD=11.86;ReadPosRankSum=-0.035;SOR=1.329;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB .:.:55:0:55:0,0 0/1:31,25:56:99:.:664,0,1205:15,16,16,9 +chrX 1736992 . A G 3425 . AC=3;AF=1.00;AN=3;AS_AltDP=108;AS_QD=31.99;DP=112;ExcessHet=0.0000;FS=0.000;MQ=53.19;QD=31.99;SOR=0.892;VarDP=108 GT:AD:DP:GQ:PL:SB 1:0,55:55:99:1718,0:0,0,25,30 1/1:0,53:53:99:1737,159,0:0,0,24,29 +chrX 1737046 . T C 697 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=7.27;BaseQRankSum=-1.516;DP=103;ExcessHet=0.0000;FS=2.689;MQ=57.20;MQRankSum=-1.792;QD=7.27;ReadPosRankSum=0.96;SOR=1.022;VarDP=100 GT:AD:DP:GQ:PL:SB 1:23,29:52:99:132,0:9,14,11,18 0/1:25,23:48:99:595,0,700:11,14,7,16 +chrX 1737080 . A AG 1144.97 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=11.96;BaseQRankSum=1.488;DP=102;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=11.96;ReadPosRankSum=0.508;SOR=0.770;VarDP=99 GT:AD:DP:GQ:PL:SB 1:21,25:46:99:161,0:8,13,11,14 0/1:22,31:53:99:1023,0,724:12,10,14,17 +chrX 1737177 . C T 945 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=7.86;BaseQRankSum=0.671;DP=127;ExcessHet=0.0000;FS=1.430;MQ=60.00;MQRankSum=0;QD=7.86;ReadPosRankSum=1.955;SOR=0.833;VarDP=124 GT:AD:DP:GQ:PL:SB 1:28,32:60:99:129,0:12,16,19,13 0/1:33,31:64:99:846,0,865:18,15,15,16 +chrX 1737252 . A G 969 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=9.42;BaseQRankSum=0.338;DP=112;ExcessHet=0.0000;FS=1.572;MQ=60.00;MQRankSum=0;QD=9.42;ReadPosRankSum=0.865;SOR=0.871;VarDP=106 GT:AD:DP:GQ:PL:SB 1:20,29:49:99:228,0:11,9,19,10 0/1:28,29:57:99:771,0,742:16,12,16,13 +chrX 1737290 . G T 1357 . AC=2;AF=0.667;AN=3;AS_AltDP=68;AS_QD=11.85;BaseQRankSum=0.566;DP=125;ExcessHet=0.0000;FS=1.507;MQ=60.00;MQRankSum=0;QD=11.85;ReadPosRankSum=0.558;SOR=0.554;VarDP=117 GT:AD:DP:GQ:PL:SB 1:18,34:52:99:470,0:11,7,19,15 0/1:31,34:65:99:917,0,787:19,12,20,14 +chrX 1737430 . TTTTTTG T 629.97 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=13.38;BaseQRankSum=-0.689;DP=125;ExcessHet=0.0000;FS=2.571;MQ=60.00;MQRankSum=0;QD=13.38;ReadPosRankSum=0.914;SOR=0.333;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,273 0/1:31,19:50:99:.:669,0,1220:11,20,9,10 +chrX 1737448 . GTT G 1115.97 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=22.21;BaseQRankSum=-0.209;DP=119;ExcessHet=0.0000;FS=5.796;MQ=59.44;MQRankSum=0;QD=22.21;ReadPosRankSum=-0.176;SOR=1.536;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,273 0/1:22,30:52:99:.:1155,0,830:11,11,10,20 +chrX 1737465 . GT G 275.97 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=7.68;BaseQRankSum=-0.439;DP=101;ExcessHet=0.0000;FS=32.864;MQ=58.82;MQRankSum=0.818;QD=7.68;ReadPosRankSum=1.262;SOR=2.208;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:44:99:44:0,540 0/1:23,18:41:99:.:315,0,422:18,5,4,14 +chrX 1737498 . T C 1218 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=15.80;BaseQRankSum=-0.644;DP=85;ExcessHet=0.0000;FS=9.997;MQ=59.89;MQRankSum=0;QD=15.80;ReadPosRankSum=0.357;SOR=0.484;VarDP=79 GT:AD:DP:GQ:PL:SB 1:12,24:36:99:388,0:4,8,15,9 0/1:15,28:43:99:860,0,382:5,10,13,15 +chrX 1737538 . T C 4244 . AC=3;AF=1.00;AN=3;AS_AltDP=96;AS_QD=29.41;DP=102;ExcessHet=0.0000;FS=0.000;MQ=59.91;QD=44.52;SOR=0.969;VarDP=96 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,41:41:99:.:.:1833,0:.:0,0,22,19 1|1:0,55:55:99:0|1:1737538_T_C:2441,166,0:1737538:0,0,20,35 +chrX 1737548 . T C 4257 . AC=3;AF=1.00;AN=3;AS_AltDP=97;AS_QD=32.20;DP=101;ExcessHet=0.0000;FS=0.000;MQ=59.91;QD=44.20;SOR=0.892;VarDP=97 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,44:44:99:.:.:1914,0:.:0,0,23,21 1|1:0,53:53:99:0|1:1737538_T_C:2373,160,0:1737538:0,0,21,32 +chrX 1737869 . TC T 822.97 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=15.39;BaseQRankSum=0.534;DP=124;ExcessHet=0.0000;FS=2.282;MQ=60.00;MQRankSum=0;QD=15.39;ReadPosRankSum=-0.369;SOR=0.368;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,481 0/1:28,28:56:99:.:862,0,872:11,17,14,14 +chrX 1737899 . T C 731 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=13.59;BaseQRankSum=3.113;DP=118;ExcessHet=0.0000;FS=1.008;MQ=60.00;MQRankSum=0;QD=13.59;ReadPosRankSum=-1.501;SOR=0.859;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,481 0/1:29,27:56:99:.:761,0,700:13,16,11,16 +chrX 1738163 . T C 576 . AC=2;AF=0.667;AN=3;AS_AltDP=49;AS_QD=5.88;BaseQRankSum=1.222;DP=109;ExcessHet=0.0000;FS=1.615;MQ=59.96;MQRankSum=1.055;QD=5.88;ReadPosRankSum=-0.244;SOR=0.941;VarDP=103 GT:AD:DP:GQ:PL:SB 1:27,28:55:75:75,0:16,11,18,10 0/1:27,21:48:99:531,0,712:14,13,12,9 +chrX 1738188 . C A,CA 291 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=1,15;AS_QD=0.00,8.92;BaseQRankSum=1.835;DP=109;ExcessHet=0.0000;FS=5.002;MQ=60.00;MQRankSum=0;QD=8.68;ReadPosRankSum=-0.291;SOR=1.577;VarDP=37 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,1215,1215 0/2:21,1,15:37:99:.:321,351,1529,0,546,441:10,11,11,5 +chrX 1738253 . C A 4214 . AC=3;AF=1.00;AN=3;AS_AltDP=129;AS_QD=32.90;DP=134;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.90;SOR=1.068;VarDP=129 GT:AD:DP:GQ:PL:SB 1:0,71:71:99:2388,0:0,0,42,29 1/1:0,58:58:99:1856,173,0:0,0,33,25 +chrX 1738376 . T A 4473 . AC=3;AF=1.00;AN=3;AS_AltDP=141;AS_QD=31.94;DP=153;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.94;SOR=0.707;VarDP=141 GT:AD:DP:GQ:PL:SB 1:0,73:73:99:2316,0:0,0,38,35 1/1:0,68:68:99:2187,204,0:0,0,33,35 +chrX 1738487 . A G 4567 . AC=3;AF=1.00;AN=3;AS_AltDP=139;AS_QD=33.07;DP=143;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.07;SOR=1.001;VarDP=139 GT:AD:DP:GQ:PL:SB 1:0,69:69:99:2283,0:0,0,27,42 1/1:0,70:70:99:2314,210,0:0,0,33,37 +chrX 1738737 . ATTTTTT A 482.97 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=14.50;BaseQRankSum=0.07;DP=112;ExcessHet=0.0000;FS=3.050;MQ=59.61;MQRankSum=0.855;QD=14.50;ReadPosRankSum=-0.802;SOR=0.772;VarDP=36 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:61:99:61:.:.:0,160 0|1:22,14:36:99:.:0|1:1738737_ATTTTTT_A:522,0,863:1738737:13,9,6,8 +chrX 1738766 . T C 349 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=10.24;BaseQRankSum=-1.987;DP=100;ExcessHet=0.0000;FS=1.289;MQ=59.92;MQRankSum=0;QD=10.24;ReadPosRankSum=0.775;SOR=1.051;VarDP=37 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:61:99:61:.:.:0,160 0|1:19,18:37:99:.:1|0:1738737_ATTTTTT_A:379,0,685:1738737:9,10,7,11 +chrX 1738962 . T C 1044 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=17.90;BaseQRankSum=-1.283;DP=122;ExcessHet=0.0000;FS=0.000;MQ=59.94;MQRankSum=-0.726;QD=17.90;ReadPosRankSum=0.376;SOR=0.798;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,160 0/1:22,38:60:99:.:1074,0,573:11,11,20,18 +chrX 1739040 . C T 816 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=7.49;BaseQRankSum=1.159;DP=115;ExcessHet=0.0000;FS=5.854;MQ=59.97;MQRankSum=0.881;QD=7.49;ReadPosRankSum=0.403;SOR=0.481;VarDP=113 GT:AD:DP:GQ:PL:SB 1:26,34:60:99:300,0:14,12,15,19 0/1:31,22:53:99:546,0,780:20,11,12,10 +chrX 1739201 . A G 3719 . AC=3;AF=1.00;AN=3;AS_AltDP=120;AS_QD=31.24;DP=126;ExcessHet=0.0000;FS=0.000;MQ=59.28;QD=31.24;SOR=0.726;VarDP=120 GT:AD:DP:GQ:PL:SB 1:0,61:61:99:1984,0:0,0,26,35 1/1:0,59:59:99:1765,176,0:0,0,35,24 +chrX 1739245 . TTG T 324.97 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=8.27;BaseQRankSum=-1.111;DP=117;ExcessHet=0.0000;FS=8.957;MQ=59.86;MQRankSum=-1.156;QD=8.27;ReadPosRankSum=1.145;SOR=0.541;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:57:99:57:0,990 0/1:26,18:44:99:.:364,0,987:18,8,8,10 +chrX 1739248 . TG T 981.97 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=9.12;BaseQRankSum=0.983;DP=118;ExcessHet=0.0000;FS=0.000;MQ=59.58;MQRankSum=1.093;QD=9.12;ReadPosRankSum=0.698;SOR=0.697;VarDP=112 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:26,29:55:73:.:.:73,0:.:15,11,11,18 0|1:31,26:57:99:0|1:1739248_TG_T:948,0,1156:1739248:15,16,18,8 +chrX 1739250 . TGTGTGTGTGTGTG T 899.97 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=15.65;BaseQRankSum=1.378;DP=128;ExcessHet=0.0000;FS=9.328;MQ=59.88;MQRankSum=0.908;QD=15.65;ReadPosRankSum=-1.012;SOR=1.660;VarDP=60 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:61:2:61:.:.:0,2 0|1:34,26:60:99:.:0|1:1739248_TG_T:939,0,1266:1739248:16,18,18,8 +chrX 1739632 . G A 341 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=6.63;BaseQRankSum=1.075;DP=115;ExcessHet=0.0000;FS=1.293;MQ=58.90;MQRankSum=-3.913;QD=6.63;ReadPosRankSum=-0.204;SOR=1.071;VarDP=56 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:57:99:57:.:.:0,539 0|1:44,12:56:99:.:0|1:1739632_G_A:371,0,1780:1739632:19,25,4,8 +chrX 1739637 . T G 341 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=6.63;BaseQRankSum=2.303;DP=114;ExcessHet=0.0000;FS=1.293;MQ=58.88;MQRankSum=-3.913;QD=6.63;ReadPosRankSum=-1.166;SOR=1.071;VarDP=56 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:57:99:57:.:.:0,539 0|1:44,12:56:99:.:0|1:1739632_G_A:371,0,1791:1739632:19,25,4,8 +chrX 1739644 . T C 347 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=6.98;BaseQRankSum=2.246;DP=111;ExcessHet=0.0000;FS=1.298;MQ=59.29;MQRankSum=-3.826;QD=6.98;ReadPosRankSum=-2.219;SOR=1.055;VarDP=54 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:57:99:57:.:.:0,539 0|1:42,12:54:99:.:0|1:1739632_G_A:377,0,1727:1739632:18,24,4,8 +chrX 1739645 . G A 302 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=6.15;BaseQRankSum=2.269;DP=111;ExcessHet=0.0000;FS=3.067;MQ=59.29;MQRankSum=-4.044;QD=6.15;ReadPosRankSum=-2.005;SOR=1.445;VarDP=54 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:57:99:57:.:.:0,539 0|1:43,11:54:99:.:0|1:1739632_G_A:332,0,1772:1739632:19,24,3,8 +chrX 1739646 . T C 305 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=6.32;BaseQRankSum=1.002;DP=110;ExcessHet=0.0000;FS=4.855;MQ=59.27;MQRankSum=-3.998;QD=6.32;ReadPosRankSum=-2.231;SOR=1.508;VarDP=53 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:57:99:57:.:.:0,539 0|1:42,11:53:99:.:0|1:1739632_G_A:335,0,1730:1739632:19,23,3,8 +chrX 1739653 . T G 218 . AC=1;AF=0.333;AN=3;AS_AltDP=9;AS_QD=4.77;BaseQRankSum=1.305;DP=109;ExcessHet=0.0000;FS=1.462;MQ=59.26;MQRankSum=-4.476;QD=4.77;ReadPosRankSum=-2.408;SOR=1.207;VarDP=52 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:57:99:57:.:.:0,539 0|1:43,9:52:99:.:0|1:1739632_G_A:248,0,1778:1739632:20,23,3,6 +chrX 1739655 . G C 218 . AC=1;AF=0.333;AN=3;AS_AltDP=9;AS_QD=4.77;BaseQRankSum=2.282;DP=109;ExcessHet=0.0000;FS=1.462;MQ=59.26;MQRankSum=-4.476;QD=4.77;ReadPosRankSum=-2.747;SOR=1.207;VarDP=52 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:57:99:57:.:.:0,539 0|1:43,9:52:99:.:0|1:1739632_G_A:248,0,1778:1739632:20,23,3,6 +chrX 1739659 . T C 215 . AC=1;AF=0.333;AN=3;AS_AltDP=9;AS_QD=4.62;BaseQRankSum=1.148;DP=110;ExcessHet=0.0000;FS=1.455;MQ=59.27;MQRankSum=-4.526;QD=4.62;ReadPosRankSum=-2.837;SOR=1.151;VarDP=53 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:57:99:57:.:.:0,539 0|1:44,9:53:99:.:0|1:1739632_G_A:245,0,1820:1739632:20,24,3,6 +chrX 1739669 . C T 102 . AC=1;AF=0.333;AN=3;AS_AltDP=6;AS_QD=2.87;BaseQRankSum=0.979;DP=103;ExcessHet=0.0000;FS=6.732;MQ=59.16;MQRankSum=-5.306;QD=2.87;ReadPosRankSum=-3.017;SOR=2.133;VarDP=46 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:57:99:57:.:.:0,539 0|1:40,6:46:99:.:0|1:1739632_G_A:132,0,1662:1739632:19,21,1,5 +chrX 1739671 . T C 60 . AC=1;AF=0.333;AN=3;AS_AltDP=5;AS_QD=2.00;BaseQRankSum=1.456;DP=102;ExcessHet=0.0000;FS=4.408;MQ=59.68;MQRankSum=-4.97;QD=2.00;ReadPosRankSum=-3.2;SOR=1.819;VarDP=45 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:57:99:57:.:.:0,539 0|1:40,5:45:90:.:0|1:1739632_G_A:90,0,1665:1739632:19,21,1,4 +chrX 1739804 . A G 1759 . AC=3;AF=1.00;AN=3;AS_AltDP=61;AS_QD=29.33;DP=61;ExcessHet=0.0000;FS=0.000;MQ=58.99;QD=29.33;SOR=1.022;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:907,0:0,0,19,12 1/1:0,30:30:89:882,89,0:0,0,16,14 +chrX 1739901 . TTGTGTG T 1600.97 . AC=3;AF=1.00;AN=3;AS_AltDP=39;AS_QD=27.83;BaseQRankSum=-0.162;DP=61;ExcessHet=0.0000;FS=3.118;MQ=57.77;MQRankSum=-0.353;QD=40.00;ReadPosRankSum=-1.621;SOR=0.194;VarDP=41 GT:AD:DP:GQ:PL:SB 1:2,19:21:99:749,0:2,0,9,10 1/1:0,20:20:61:891,61,0:0,0,10,10 +chrX 1740233 . T TTG 831.97 . AC=2;AF=0.667;AN=3;AS_AltDP=48;AS_QD=10.37;BaseQRankSum=0.598;DP=108;ExcessHet=0.0000;FS=5.679;MQ=59.40;MQRankSum=-0.91;QD=10.37;ReadPosRankSum=1.14;SOR=0.317;VarDP=84 GT:AD:DP:GQ:PL:SB 1:21,23:44:81:81,0:14,7,11,12 0/1:15,25:40:99:790,0,420:10,5,15,10 +chrX 1740794 . A G 804 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=14.38;BaseQRankSum=-0.923;DP=117;ExcessHet=0.0000;FS=5.223;MQ=59.00;MQRankSum=-0.387;QD=14.38;ReadPosRankSum=-0.829;SOR=0.521;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,386 0/1:26,32:58:99:.:834,0,690:16,10,15,17 +chrX 1741477 . A G 916 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=8.76;BaseQRankSum=-1.685;DP=112;ExcessHet=0.0000;FS=1.609;MQ=60.00;MQRankSum=0;QD=8.76;ReadPosRankSum=0.204;SOR=0.904;VarDP=108 GT:AD:DP:GQ:PL:SB 1:24,36:60:99:336,0:14,10,23,13 0/1:24,24:48:99:610,0,660:15,9,16,8 +chrX 1741635 . C T 590 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=13.78;BaseQRankSum=1.77;DP=109;ExcessHet=0.0000;FS=2.755;MQ=60.00;MQRankSum=0;QD=13.78;ReadPosRankSum=-0.398;SOR=0.323;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,154 0/1:22,23:45:99:.:620,0,529:6,16,9,14 +chrX 1741693 . G GAA 305.97 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=11.90;BaseQRankSum=-1.247;DP=106;ExcessHet=0.0000;FS=1.550;MQ=59.62;MQRankSum=-0.897;QD=11.90;ReadPosRankSum=-1.048;SOR=1.123;VarDP=29 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,154 0/1:14,15:29:99:.:345,0,370:5,9,4,11 +chrX 1741979 . A G 606 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=5.63;BaseQRankSum=1.995;DP=118;ExcessHet=0.0000;FS=1.503;MQ=60.00;MQRankSum=0;QD=5.63;ReadPosRankSum=-0.787;SOR=0.619;VarDP=113 GT:AD:DP:GQ:PL:SB 1:27,29:56:72:72,0:11,16,16,13 0/1:35,22:57:99:564,0,871:18,17,10,12 +chrX 1742181 . G A 1046 . AC=2;AF=0.667;AN=3;AS_AltDP=67;AS_QD=7.91;BaseQRankSum=3.248;DP=138;ExcessHet=0.0000;FS=2.240;MQ=60.00;MQRankSum=0;QD=7.91;ReadPosRankSum=1.684;SOR=0.913;VarDP=136 GT:AD:DP:GQ:PL:SB 1:32,37:69:99:234,0:22,10,25,12 0/1:37,30:67:99:842,0,959:20,17,19,11 +chrX 1742239 . C T 1139 . AC=1;AF=0.333;AN=3;AS_AltDP=45;AS_QD=15.59;BaseQRankSum=-0.201;DP=153;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=15.59;ReadPosRankSum=1.422;SOR=0.656;VarDP=75 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:74:99:74:0,423 0/1:30,45:75:99:.:1169,0,694:17,13,25,20 +chrX 1742415 . G A 833 . AC=2;AF=0.667;AN=3;AS_AltDP=64;AS_QD=6.64;BaseQRankSum=0.671;DP=137;ExcessHet=0.0000;FS=5.240;MQ=59.96;MQRankSum=0;QD=6.64;ReadPosRankSum=1.528;SOR=0.883;VarDP=130 GT:AD:DP:GQ:PL:SB 1:33,40:73:99:254,0:17,16,17,23 0/1:33,24:57:99:609,0,876:18,15,11,13 +chrX 1742508 . T C 4127 . AC=3;AF=1.00;AN=3;AS_AltDP=123;AS_QD=33.80;DP=126;ExcessHet=0.0000;FS=0.000;MQ=59.73;QD=33.80;SOR=0.885;VarDP=123 GT:AD:DP:GQ:PL:SB 1:0,66:66:99:2241,0:0,0,26,40 1/1:0,57:57:99:1916,171,0:0,0,30,27 +chrX 1742679 . A C 497 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=9.58;BaseQRankSum=-1.738;DP=121;ExcessHet=0.0000;FS=19.284;MQ=60.00;MQRankSum=0;QD=9.58;ReadPosRankSum=0.862;SOR=0.867;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,204 0/1:32,23:55:99:.:527,0,909:8,24,14,9 +chrX 1742692 . G GA 2352.97 . AC=3;AF=1.00;AN=3;AS_AltDP=93;AS_QD=25.72;DP=115;ExcessHet=0.0000;FS=0.000;MQ=59.92;QD=25.72;SOR=0.953;VarDP=93 GT:AD:DP:GQ:PL:SB 1:0,49:49:99:1259,0:0,0,21,28 1/1:0,44:44:99:1133,130,0:0,0,20,24 +chrX 1743023 . A G,T 4624 . AC=1,2;AF=0.333,0.667;AN=3;AS_AltDP=62,66;AS_QD=29.96,30.65;DP=133;ExcessHet=0.0000;FS=0.000;MQ=59.75;QD=36.36;SOR=0.971;VarDP=128 GT:AD:DP:GQ:PL:SB 2:0,33,38:71:99:2281,259,0:0,0,34,37 1/2:0,29,28:57:99:2373,883,722,909,0,747:0,0,22,35 +chrX 1743025 . C G 5755 . AC=3;AF=1.00;AN=3;AS_AltDP=131;AS_QD=27.14;DP=132;ExcessHet=0.0000;FS=0.000;MQ=59.75;QD=44.16;SOR=0.945;VarDP=131 GT:AD:DP:GQ:PL:SB 1:0,74:74:99:3242,0:0,0,36,38 1/1:0,57:57:99:2543,172,0:0,0,22,35 +chrX 1743240 . G A 860 . AC=2;AF=0.667;AN=3;AS_AltDP=68;AS_QD=6.36;BaseQRankSum=1.2;DP=147;ExcessHet=0.0000;FS=1.382;MQ=60.00;MQRankSum=0;QD=6.36;ReadPosRankSum=1.11;SOR=0.853;VarDP=140 GT:AD:DP:GQ:PL:SB 1:35,36:71:76:76,0:24,11,22,14 0/1:37,32:69:99:814,0,983:20,17,22,10 +chrX 1743505 . C A 540 . AC=2;AF=0.667;AN=3;AS_AltDP=48;AS_QD=5.70;BaseQRankSum=1.424;DP=103;ExcessHet=0.0000;FS=4.990;MQ=59.84;MQRankSum=0;QD=5.70;ReadPosRankSum=0.047;SOR=0.815;VarDP=100 GT:AD:DP:GQ:PL:SB 1:29,29:58:55:55,0:16,13,11,18 0/1:23,19:42:99:515,0,618:13,10,10,9 +chrX 1743798 . CT C 868.97 . AC=1;AF=0.500;AN=2;AS_AltDP=58;AS_QD=7.50;BaseQRankSum=0.714;DP=124;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=7.50;ReadPosRankSum=1.014;SOR=0.699;VarDP=121 GT:AD:DP:GQ:PL:SB .:31,31:62:1:1,0:16,15,20,11 0/1:32,27:59:99:907,0,1093:23,9,16,11 +chrX 1743989 . ATT A 964.97 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=10.46;BaseQRankSum=0.293;DP=113;ExcessHet=0.0000;FS=0.769;MQ=59.85;MQRankSum=1.163;QD=10.46;ReadPosRankSum=1.626;SOR=0.839;VarDP=96 GT:AD:DP:GQ:PL:SB 1:20,25:45:99:171,0:9,11,15,10 0/1:24,27:51:99:833,0,715:14,10,14,13 +chrX 1744034 . G A 1160 . AC=2;AF=0.667;AN=3;AS_AltDP=67;AS_QD=10.35;BaseQRankSum=0.685;DP=118;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=10.35;ReadPosRankSum=1.515;SOR=0.635;VarDP=115 GT:AD:DP:GQ:PL:SB 1:24,28:52:99:165,0:12,12,15,13 0/1:24,39:63:99:1025,0,636:16,8,23,16 +chrX 1744089 . C T 1383 . AC=2;AF=0.667;AN=3;AS_AltDP=70;AS_QD=10.95;BaseQRankSum=1.09;DP=134;ExcessHet=0.0000;FS=1.390;MQ=60.00;MQRankSum=0;QD=10.95;ReadPosRankSum=1.79;SOR=0.836;VarDP=129 GT:AD:DP:GQ:PL:SB 1:18,28:46:99:307,0:7,11,13,15 0/1:41,42:83:99:1106,0,1016:22,19,19,23 +chrX 1744126 . T C 3766 . AC=3;AF=1.00;AN=3;AS_AltDP=118;AS_QD=32.17;DP=121;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.17;SOR=0.874;VarDP=118 GT:AD:DP:GQ:PL:SB 1:0,39:39:99:1271,0:0,0,16,23 1/1:0,79:79:99:2525,237,0:0,0,38,41 +chrX 1744213 . C T 1128 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=9.73;BaseQRankSum=3.673;DP=124;ExcessHet=0.0000;FS=19.987;MQ=60.00;MQRankSum=0;QD=9.73;ReadPosRankSum=-0.206;SOR=0.893;VarDP=119 GT:AD:DP:GQ:PL:SB 1:24,24:48:59:59,0:9,15,15,9 0/1:33,38:71:99:1099,0,739:11,22,22,16 +chrX 1744353 . C T 1021 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=14.40;BaseQRankSum=1.123;DP=138;ExcessHet=0.0000;FS=6.131;MQ=60.00;MQRankSum=0;QD=14.40;ReadPosRankSum=1.353;SOR=1.302;VarDP=73 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,626 0/1:35,38:73:99:.:1051,0,900:17,18,24,14 +chrX 1745221 . T C 1150 . AC=2;AF=0.667;AN=3;AS_AltDP=68;AS_QD=9.15;BaseQRankSum=-0.547;DP=134;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=9.15;ReadPosRankSum=-0.142;SOR=0.643;VarDP=129 GT:AD:DP:GQ:PL:SB 1:26,39:65:99:395,0:14,12,22,17 0/1:35,29:64:99:785,0,1004:20,15,15,14 +chrX 1745974 . T C 762 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=12.77;BaseQRankSum=-0.152;DP=126;ExcessHet=0.0000;FS=0.979;MQ=60.00;MQRankSum=0;QD=12.77;ReadPosRankSum=0.452;SOR=0.880;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,155 0/1:33,29:62:99:.:792,0,931:14,19,11,18 +chrX 1746749 . C T 364 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=6.57;BaseQRankSum=-1.267;DP=123;ExcessHet=0.0000;FS=1.059;MQ=60.00;MQRankSum=0;QD=6.57;ReadPosRankSum=-0.706;SOR=1.002;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,155 0/1:40,20:60:99:.:394,0,1129:21,19,12,8 +chrX 1747324 . A G 3641 . AC=3;AF=1.00;AN=3;AS_AltDP=115;AS_QD=31.92;DP=121;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.92;SOR=0.899;VarDP=115 GT:AD:DP:GQ:PL:SB 1:0,56:56:99:1826,0:0,0,26,30 1/1:0,59:59:99:1845,176,0:0,0,37,22 +chrX 1747489 . T TTG,TTTG 512.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=34,16;AS_QD=1.99,4.80;BaseQRankSum=0.775;DP=116;ExcessHet=0.0000;FS=7.462;MQ=59.57;MQRankSum=-0.805;QD=5.02;ReadPosRankSum=-0.466;SOR=0.298;VarDP=110 GT:AD:DP:GQ:PL:SB 1:24,34,0:58:99:187,0,1142:7,17,16,18 0/2:36,0,16:52:99:365,472,1748,0,1275,1228:15,21,9,7 +chrX 1747895 . G A 605 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=9.62;BaseQRankSum=-1.57;DP=125;ExcessHet=0.0000;FS=7.139;MQ=60.00;MQRankSum=0;QD=9.62;ReadPosRankSum=0.039;SOR=0.205;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:57:99:57:0,233 0/1:37,29:66:99:.:635,0,1004:27,10,16,13 +chrX 1748039 . C T 801 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=7.29;BaseQRankSum=0.902;DP=117;ExcessHet=0.0000;FS=0.695;MQ=60.00;MQRankSum=0;QD=7.29;ReadPosRankSum=0.726;SOR=0.783;VarDP=114 GT:AD:DP:GQ:PL:SB 1:25,26:51:67:67,0:16,9,14,12 0/1:35,28:63:99:764,0,977:16,19,16,12 +chrX 1748690 . C T 501 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=11.06;BaseQRankSum=0.77;DP=116;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=11.06;ReadPosRankSum=-0.293;SOR=0.743;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,208 0/1:28,20:48:99:.:531,0,779:15,13,11,9 +chrX 1749570 . G A 3613 . AC=3;AF=1.00;AN=3;AS_AltDP=111;AS_QD=32.24;BaseQRankSum=3.695;DP=117;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=32.24;ReadPosRankSum=0.043;SOR=0.786;VarDP=113 GT:AD:DP:GQ:PL:SB 1:0,56:56:99:1836,0:0,0,29,27 1/1:2,55:57:99:1807,151,0:1,1,24,31 +chrX 1749803 . C T 166 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=2.76;BaseQRankSum=0.876;DP=132;ExcessHet=0.0000;FS=1.974;MQ=60.00;MQRankSum=0;QD=2.76;ReadPosRankSum=0.969;SOR=0.446;VarDP=71 GT:AD:DP:GQ:MIN_DP:PL:SB 1:33,38:71:99:.:196,0:19,14,19,19 0/0:.:60:99:60:0,115,1375 +chrX 1750446 . C A 1363 . AC=2;AF=0.667;AN=3;AS_AltDP=76;AS_QD=9.41;BaseQRankSum=0.468;DP=150;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=9.41;ReadPosRankSum=1.439;SOR=0.737;VarDP=148 GT:AD:DP:GQ:PL:SB 1:26,45:71:99:656,0:10,16,23,22 0/1:46,31:77:99:737,0,1294:23,23,11,20 +chrX 1750486 . T C 1109 . AC=1;AF=0.333;AN=3;AS_AltDP=43;AS_QD=16.27;BaseQRankSum=-0.106;DP=136;ExcessHet=0.0000;FS=4.869;MQ=60.00;MQRankSum=0;QD=16.27;ReadPosRankSum=0.26;SOR=0.383;VarDP=70 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,625 0/1:27,43:70:99:.:1139,0,648:10,17,22,21 +chrX 1751786 . A C 2282 . AC=3;AF=1.00;AN=3;AS_AltDP=74;AS_QD=30.42;BaseQRankSum=2.564;DP=87;ExcessHet=0.0000;FS=6.314;MQ=59.36;MQRankSum=0;QD=30.42;ReadPosRankSum=0;SOR=0.297;VarDP=76 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,39:40:99:.:.:1261,0:.:0,1,22,17 1|1:1,35:36:96:0|1:1751786_A_C:1051,96,0:1751786:0,1,17,18 +chrX 1752056 . C T 409 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=9.34;BaseQRankSum=-0.319;DP=112;ExcessHet=0.0000;FS=8.698;MQ=60.00;MQRankSum=0;QD=9.34;ReadPosRankSum=-0.701;SOR=1.961;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:71:63:0,71 0/1:29,18:47:99:.:439,0,826:13,16,4,14 +chrX 1752639 . G C 759 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=14.09;BaseQRankSum=-2.057;DP=121;ExcessHet=0.0000;FS=2.284;MQ=60.00;MQRankSum=0;QD=14.09;ReadPosRankSum=-0.74;SOR=1.143;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:71:63:0,71 0/1:26,30:56:99:.:789,0,726:13,13,18,12 +chrX 1753501 . C T 677 . AC=1;AF=0.500;AN=2;AS_AltDP=25;AS_QD=16.07;BaseQRankSum=0.438;DP=122;ExcessHet=0.0000;FS=1.187;MQ=60.00;MQRankSum=0;QD=16.07;ReadPosRankSum=1.73;SOR=1.011;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB .:.:74:0:74:0,0 0/1:19,25:44:99:.:707,0,481:9,10,10,15 +chrX 1753613 . A G 643 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=5.75;BaseQRankSum=-0.293;DP=117;ExcessHet=0.0000;FS=2.359;MQ=60.00;MQRankSum=0;QD=5.75;ReadPosRankSum=-0.648;SOR=0.622;VarDP=117 GT:AD:DP:GQ:PL:SB 1:30,32:62:24:24,0:14,16,15,17 0/1:29,26:55:99:649,0,769:18,11,13,13 +chrX 1753791 . A G 868 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=7.88;BaseQRankSum=1.564;DP=115;ExcessHet=0.0000;FS=10.230;MQ=60.00;MQRankSum=0;QD=7.88;ReadPosRankSum=0.052;SOR=1.236;VarDP=114 GT:AD:DP:GQ:PL:SB 1:25,29:54:99:159,0:13,12,10,19 0/1:33,27:60:99:739,0,900:18,15,11,16 +chrX 1753975 . C T 988 . AC=2;AF=0.667;AN=3;AS_AltDP=66;AS_QD=8.85;BaseQRankSum=0.456;DP=115;ExcessHet=0.0000;FS=1.537;MQ=60.00;MQRankSum=0;QD=8.85;ReadPosRankSum=0.547;SOR=0.542;VarDP=115 GT:AD:DP:GQ:PL:SB 1:30,32:62:80:80,0:19,11,19,13 0/1:19,34:53:99:938,0,502:12,7,20,14 +chrX 1754184 . T C 1173 . AC=2;AF=0.667;AN=3;AS_AltDP=72;AS_QD=9.86;BaseQRankSum=1.504;DP=126;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=9.86;ReadPosRankSum=1.623;SOR=0.693;VarDP=122 GT:AD:DP:GQ:PL:SB 1:28,33:61:94:94,0:15,13,15,18 0/1:22,39:61:99:1109,0,487:10,12,21,18 +chrX 1754282 . G A 609 . AC=2;AF=0.667;AN=3;AS_AltDP=46;AS_QD=6.26;BaseQRankSum=0.146;DP=110;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=6.26;ReadPosRankSum=1.963;SOR=0.667;VarDP=102 GT:AD:DP:GQ:PL:SB 1:22,28:50:99:199,0:9,13,12,16 0/1:34,18:52:99:440,0,951:15,19,8,10 +chrX 1754557 . C G 4123 . AC=3;AF=1.00;AN=3;AS_AltDP=126;AS_QD=32.96;DP=133;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.96;SOR=1.016;VarDP=126 GT:AD:DP:GQ:PL:SB 1:0,70:70:99:2317,0:0,0,29,41 1/1:0,56:56:99:1836,167,0:0,0,25,31 +chrX 1754773 . G A 731 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=6.50;BaseQRankSum=1.486;DP=121;ExcessHet=0.0000;FS=5.813;MQ=60.00;MQRankSum=0;QD=6.50;ReadPosRankSum=1.807;SOR=1.226;VarDP=117 GT:AD:DP:GQ:PL:SB 1:32,41:73:99:308,0:17,15,31,10 0/1:26,18:44:99:453,0,681:14,12,7,11 +chrX 1754821 . T C 3450 . AC=3;AF=1.00;AN=3;AS_AltDP=114;AS_QD=30.53;DP=121;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.53;SOR=0.922;VarDP=114 GT:AD:DP:GQ:PL:SB 1:0,76:76:99:2245,0:0,0,43,33 1/1:0,38:38:99:1235,114,0:0,0,20,18 +chrX 1755829 . A G 1354 . AC=2;AF=0.667;AN=3;AS_AltDP=77;AS_QD=10.73;BaseQRankSum=-0.286;DP=132;ExcessHet=0.0000;FS=9.696;MQ=60.00;MQRankSum=0;QD=10.73;ReadPosRankSum=0.35;SOR=1.144;VarDP=129 GT:AD:DP:GQ:PL:SB 1:29,43:72:99:444,0:14,15,17,26 0/1:23,34:57:99:940,0,588:14,9,13,21 +chrX 1756550 . A G 3606 . AC=3;AF=1.00;AN=3;AS_AltDP=111;AS_QD=32.76;DP=114;ExcessHet=0.0000;FS=0.000;MQ=59.92;QD=32.76;SOR=0.711;VarDP=111 GT:AD:DP:GQ:PL:SB 1:0,64:64:99:2104,0:0,0,32,32 1/1:0,47:47:99:1532,141,0:0,0,23,24 +chrX 1756841 . A AAAAT 1020.97 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=10.29;BaseQRankSum=1.17;DP=131;ExcessHet=0.0000;FS=0.754;MQ=59.96;MQRankSum=0.027;QD=10.29;ReadPosRankSum=-1.362;SOR=0.563;VarDP=103 GT:AD:DP:GQ:PL:SB 1:26,27:53:69:69,0:11,15,11,16 0/1:24,26:50:99:991,0,909:8,16,11,15 +chrX 1757343 . CA C 2331.97 . AC=3;AF=1.00;AN=3;AS_AltDP=79;AS_QD=30.01;DP=93;ExcessHet=0.0000;FS=0.000;MQ=59.73;QD=30.01;SOR=0.718;VarDP=79 GT:AD:DP:GQ:PL:SB 1:0,38:38:99:1141,0:0,0,18,20 1/1:0,41:41:99:1230,123,0:0,0,22,19 +chrX 1757501 . C CAA,CAAAA 2399.97 . AC=1,2;AF=0.333,0.667;AN=3;AS_AltDP=28,39;AS_QD=24.68,32.26;DP=112;ExcessHet=0.0000;FS=0.000;MQ=58.76;QD=36.40;SOR=0.917;VarDP=67 GT:AD:DP:GQ:PL:SB 2:0,15,23:38:99:1177,209,0:0,0,22,16 1/2:0,13,16:29:99:1262,491,379,374,0,295:0,0,15,14 +chrX 1758013 . T C 1146 . AC=1;AF=0.333;AN=3;AS_AltDP=42;AS_QD=20.28;BaseQRankSum=-0.013;DP=117;ExcessHet=0.0000;FS=6.140;MQ=60.00;MQRankSum=0;QD=20.28;ReadPosRankSum=0.888;SOR=0.759;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:99:56:0,218 0/1:16,42:58:99:.:1176,0,338:10,6,18,24 +chrX 1758112 . A G 3705 . AC=3;AF=1.00;AN=3;AS_AltDP=116;AS_QD=31.92;BaseQRankSum=1.706;DP=121;ExcessHet=0.0000;FS=3.869;MQ=60.00;MQRankSum=0;QD=31.92;ReadPosRankSum=1.371;SOR=0.866;VarDP=117 GT:AD:DP:GQ:PL:SB 1:1,66:67:99:2073,0:0,1,38,28 1/1:0,50:50:99:1662,150,0:0,0,31,19 +chrX 1759413 . A G 4405 . AC=3;AF=1.00;AN=3;AS_AltDP=137;AS_QD=32.37;DP=139;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.37;SOR=0.708;VarDP=137 GT:AD:DP:GQ:PL:SB 1:0,74:74:99:2432,0:0,0,37,37 1/1:0,63:63:99:2003,189,0:0,0,31,32 +chrX 1759496 . A G 3940 . AC=3;AF=1.00;AN=3;AS_AltDP=124;AS_QD=31.51;BaseQRankSum=2.941;DP=129;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=31.51;ReadPosRankSum=0.114;SOR=1.022;VarDP=126 GT:AD:DP:GQ:PL:SB 1:0,61:61:99:1980,0:0,0,32,29 1/1:2,63:65:99:1990,144,0:1,1,39,24 +chrX 1760079 . T TTCCC 258.97 . AC=1;AF=0.333;AN=3;AS_AltDP=9;AS_QD=11.92;BaseQRankSum=-0.579;DP=87;ExcessHet=0.0000;FS=0.000;MQ=59.33;MQRankSum=-1.25;QD=11.92;ReadPosRankSum=1.389;SOR=1.022;VarDP=25 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:53:99:53:.:.:0,675 0|1:16,9:25:99:.:0|1:1760079_T_TTCCC:298,0,645:1760079:5,11,2,7 +chrX 1760087 . CTCCCTCCT C,TTCCCTCCT 263 . AC=0,1;AF=0.00,0.500;AN=2;AS_AltDP=0,9;AS_QD=0.00,11.72;BaseQRankSum=0.286;DP=69;ExcessHet=0.0000;FS=0.000;MQ=58.95;MQRankSum=-0.421;QD=11.72;ReadPosRankSum=0.819;SOR=0.719;VarDP=25 GT:AD:DP:GQ:MIN_DP:PL:SB .:.:34:0:34:0,0,0 0/2:16,0,9:25:99:.:293,368,1393,0,696,729:4,12,2,7 +chrX 1760091 . C *,T 266 . AC=0,1;AF=0.00,0.500;AN=2;AS_AltDP=0,9;AS_QD=0.00,12.33;BaseQRankSum=-0.044;DP=64;ExcessHet=0.0000;FS=0.000;MQ=59.29;MQRankSum=-1.205;QD=12.33;ReadPosRankSum=0.567;SOR=0.515;VarDP=24 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB .:.:32:0:32:.:.:0,0,0 0|2:15,0,9:24:99:.:0|1:1760079_T_TTCCC:296,362,1261,0,648,687:1760079:3,12,2,7 +chrX 1760095 . T *,C 263 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=0,9;AS_QD=0.00,11.72;BaseQRankSum=-1.181;DP=64;ExcessHet=0.0000;FS=0.000;MQ=58.85;MQRankSum=-0.421;QD=11.72;ReadPosRankSum=0.716;SOR=0.719;VarDP=25 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:32:51:32:.:.:0,51,51 0|2:16,0,9:25:99:.:0|1:1760079_T_TTCCC:293,359,1258,0,687,729:1760079:4,12,2,7 +chrX 1760126 . C T,CTTCT,CTTCCTTCCTTCT 1833 . AC=1,0,2;AF=0.333,0.00,0.667;AN=3;AS_AltDP=29,0,4;AS_QD=33.72,30.19,32.15;DP=70;ExcessHet=0.0000;FS=0.000;MQ=58.85;QD=56.45;SOR=1.022;VarDP=33 GT:AD:DP:GQ:PL:SB 3:0,14,0,1:15:99:596,233,177,0:0,0,9,6 1/3:0,15,0,3:18:99:1267,652,793,736,267,852,618,0,590,570:0,0,5,13 +chrX 1760130 . CTTCCTTCT C 524.97 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=15.24;BaseQRankSum=1.529;DP=74;ExcessHet=0.0000;FS=1.320;MQ=58.66;MQRankSum=-0.915;QD=15.24;ReadPosRankSum=0.217;SOR=0.999;VarDP=37 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:37:99:37:0,139 0/1:22,15:37:99:.:564,0,865:9,13,5,10 +chrX 1760200 . CTT C 446.97 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=13.14;BaseQRankSum=1.186;DP=76;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.14;ReadPosRankSum=-1.072;SOR=0.879;VarDP=37 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:37:99:37:.:.:0,139 0|1:23,14:37:99:.:0|1:1760200_CTT_C:486,0,913:1760200:11,12,6,8 +chrX 1760210 . CTT C 413.97 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=12.24;BaseQRankSum=0.172;DP=75;ExcessHet=0.0000;FS=1.323;MQ=60.00;MQRankSum=0;QD=12.24;ReadPosRankSum=-0.626;SOR=0.713;VarDP=37 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:37:99:37:.:.:0,139 0|1:24,13:37:99:.:0|1:1760200_CTT_C:453,0,948:1760200:13,11,6,7 +chrX 1760222 . C T,CTCTT 2630 . AC=1,2;AF=0.333,0.667;AN=3;AS_AltDP=27,40;AS_QD=31.90,28.92;DP=86;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=39.70;SOR=0.784;VarDP=67 GT:AD:DP:GQ:PL:SB 2:0,16,18:34:99:1017,294,0:0,0,18,16 1/2:0,11,22:33:99:1643,929,953,477,0,390:0,0,17,16 +chrX 1760299 . C T 1127 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=9.64;BaseQRankSum=0.175;DP=125;ExcessHet=0.0000;FS=2.337;MQ=60.00;MQRankSum=0;QD=9.64;ReadPosRankSum=0.913;SOR=0.597;VarDP=120 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:30,35:65:99:.:.:234,0:.:15,15,16,19 0|1:30,25:55:99:0|1:1760299_C_T:923,0,1148:1760299:18,12,13,12 +chrX 1760302 . A G 1096 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=9.46;BaseQRankSum=0.859;DP=124;ExcessHet=0.0000;FS=3.323;MQ=60.00;MQRankSum=0;QD=9.46;ReadPosRankSum=0.976;SOR=0.640;VarDP=119 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:30,35:65:99:.:.:234,0:.:15,15,16,19 0|1:30,24:54:99:0|1:1760299_C_T:892,0,1151:1760299:18,12,12,12 +chrX 1760379 . C T 348 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=6.75;BaseQRankSum=1.106;DP=119;ExcessHet=0.0000;FS=8.947;MQ=60.00;MQRankSum=0;QD=6.75;ReadPosRankSum=-0.98;SOR=2.066;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:49:61:0,49 0/1:40,16:56:99:.:378,0,1135:23,17,13,3 +chrX 1761406 . AT A,ATT 2707.97 . AC=3,0;AF=1.00,0.00;AN=3;AS_AltDP=97,3;AS_QD=28.32,0.00;DP=122;ExcessHet=0.0000;FS=0.000;MQ=59.77;QD=27.47;SOR=0.863;VarDP=100 GT:AD:DP:GQ:PL:SB 1:0,38,2:40:99:1075,0,1391:0,0,22,18 1/1:0,59,1:60:99:1672,170,0,1797,142,2216:0,0,32,28 +chrX 1761505 . G A 887 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=13.89;BaseQRankSum=1.871;DP=112;ExcessHet=0.0000;FS=4.895;MQ=59.83;MQRankSum=1.03;QD=13.89;ReadPosRankSum=0.488;SOR=1.085;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:45:10:45:0,10 0/1:33,33:66:99:.:917,0,740:18,15,13,20 +chrX 1761566 . G GT 550.97 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=13.41;BaseQRankSum=-0.782;DP=111;ExcessHet=0.0000;FS=1.194;MQ=59.15;MQRankSum=0.455;QD=13.41;ReadPosRankSum=-1.087;SOR=0.694;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:57:99:57:0,153 0/1:18,26:44:99:.:590,0,376:8,10,14,12 +chrX 1761789 . C T 745 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=13.36;BaseQRankSum=0.309;DP=122;ExcessHet=0.0000;FS=2.277;MQ=60.00;MQRankSum=0;QD=13.36;ReadPosRankSum=0.529;SOR=0.369;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:57:99:57:0,153 0/1:29,29:58:99:.:775,0,784:10,19,13,16 +chrX 1762130 . C CG 980.97 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=16.72;BaseQRankSum=-0.16;DP=120;ExcessHet=0.0000;FS=5.105;MQ=59.92;MQRankSum=-0.984;QD=16.72;ReadPosRankSum=-0.188;SOR=1.040;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:57:99:57:0,153 0/1:31,30:61:99:.:1020,0,1025:17,14,12,18 +chrX 1762255 . T C 823 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=12.01;BaseQRankSum=1.671;DP=130;ExcessHet=0.0000;FS=6.795;MQ=59.93;MQRankSum=-1.076;QD=12.01;ReadPosRankSum=0.381;SOR=1.583;VarDP=71 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:57:99:57:0,153 0/1:39,32:71:99:.:853,0,1039:23,16,24,8 +chrX 1762432 . CTTT C 49.97 . AC=1;AF=0.333;AN=3;AS_AltDP=4;AS_QD=4.05;BaseQRankSum=-2.095;DP=111;ExcessHet=0.0000;FS=0.000;MQ=59.02;MQRankSum=0.589;QD=4.05;ReadPosRankSum=0.585;SOR=0.368;VarDP=22 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:57:99:57:0,153 0/1:18,4:22:89:.:89,0,660:4,14,1,3 +chrX 1762452 . TTTTTTTTTG T 630.97 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=14.89;BaseQRankSum=1.107;DP=125;ExcessHet=0.0000;FS=22.228;MQ=59.09;MQRankSum=-1.073;QD=14.89;ReadPosRankSum=0.015;SOR=2.477;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:3:67:0,3 0/1:25,20:45:99:.:670,0,837:16,9,4,16 +chrX 1762532 . A G 3160 . AC=3;AF=1.00;AN=3;AS_AltDP=99;AS_QD=32.22;DP=104;ExcessHet=0.0000;FS=0.000;MQ=59.73;QD=32.22;SOR=0.985;VarDP=99 GT:AD:DP:GQ:PL:SB 1:0,49:49:99:1603,0:0,0,21,28 1/1:0,50:50:99:1587,149,0:0,0,22,28 +chrX 1762856 . G C 734 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=12.13;BaseQRankSum=-1.559;DP=127;ExcessHet=0.0000;FS=11.025;MQ=60.00;MQRankSum=0;QD=12.13;ReadPosRankSum=-0.833;SOR=0.655;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:36:62:0,36 0/1:33,30:63:99:.:764,0,909:22,11,13,17 +chrX 1762937 . T TATTA 1456.97 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=14.52;BaseQRankSum=-1.014;DP=113;ExcessHet=0.0000;FS=9.408;MQ=60.00;MQRankSum=0;QD=14.52;ReadPosRankSum=-0.664;SOR=0.734;VarDP=103 GT:AD:DP:GQ:PL:SB 1:18,31:49:99:579,0:13,5,13,18 0/1:30,24:54:99:917,0,1188:16,14,11,13 +chrX 1763141 . C T 664 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=15.42;BaseQRankSum=-1.048;DP=105;ExcessHet=0.0000;FS=1.280;MQ=60.00;MQRankSum=0;QD=15.42;ReadPosRankSum=1.611;SOR=0.446;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,144 0/1:20,25:45:99:.:694,0,534:5,15,8,17 +chrX 1763480 . C T 1068 . AC=1;AF=0.333;AN=3;AS_AltDP=39;AS_QD=16.64;BaseQRankSum=0.073;DP=125;ExcessHet=0.0000;FS=3.460;MQ=60.00;MQRankSum=0;QD=16.64;ReadPosRankSum=0.163;SOR=0.345;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,144 0/1:27,39:66:99:.:1098,0,671:17,10,20,19 +chrX 1763583 . C A,* 3732 . AC=3,0;AF=1.00,0.00;AN=3;AS_AltDP=66,0;AS_QD=30.62,26.46;DP=93;ExcessHet=0.0000;FS=0.000;MQ=56.46;QD=57.00;SOR=1.033;VarDP=66 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,47,0:47:99:.:.:1952,0,1952:.:0,0,26,21 1|1:0,19,0:19:57:1|0:1763582_CCTG_C:1810,133,0,851,57,844:1763582:0,0,12,7 +chrX 1763599 . C T 714 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=19.08;BaseQRankSum=-1.875;DP=83;ExcessHet=0.0000;FS=3.979;MQ=55.31;MQRankSum=-1.985;QD=19.08;ReadPosRankSum=0;SOR=1.477;VarDP=39 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:43:88:43:.:.:0,88 0|1:19,20:39:99:.:0|1:1763599_C_T:744,0,738:1763599:12,7,0,1 +chrX 1763600 . T G,* 714 . AC=1,0;AF=0.333,0.00;AN=3;AS_AltDP=0,0;AS_QD=31.04,25.90;BaseQRankSum=-1.742;DP=83;ExcessHet=0.0000;FS=3.979;MQ=55.31;MQRankSum=-1.985;QD=37.20;ReadPosRankSum=0.173;SOR=1.477;VarDP=20 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:43:88:43:.:.:0,88,88 0|1:19,1,0:20:33:.:0|1:1763599_C_T:744,0,738,33,741,771:1763599:12,7,0,1 +chrX 1763602 . CCACGGCTGCCTTGAAGGTTGTGAAATTGCTCACGGCTGCCTTGAAGGTTGTGAAATTGCT C,TCACGGCTGCCTTGAAGGTTGTGAAATTGCTCACGGCTGCCTTGAAGGTTGTGAAATTGCT 1410 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=22,37;AS_QD=22.64,29.73;BaseQRankSum=-0.524;DP=90;ExcessHet=0.0000;FS=7.513;MQ=52.96;MQRankSum=0.29;QD=20.57;ReadPosRankSum=0.524;SOR=0.419;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,22,18:40:13:747,0,13:0,0,22,18 0/2:11,0,19:30:99:693,726,1152,0,411,1013:3,8,0,1 +chrX 1763655 . A *,C 346 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=0,4;AS_QD=0.00,20.89;BaseQRankSum=-0.608;DP=70;ExcessHet=0.0000;FS=4.464;MQ=45.97;MQRankSum=1.225;QD=20.89;ReadPosRankSum=2.497;SOR=0.575;VarDP=18 GT:AD:DP:GQ:PL:SB 1:0,22,0:40:99:747,0,936:0,0,22,18 0/2:14,0,4:18:99:376,104,700,0,567,555:5,9,2,2 +chrX 1763778 . T G 55 . AC=1;AF=1.00;AN=1;AS_AltDP=4;AS_QD=17.00;BaseQRankSum=-0.253;DP=11;ExcessHet=0.0000;FS=0.000;MQ=33.57;MQRankSum=-0.842;QD=17.00;ReadPosRankSum=-0.524;SOR=1.981;VarDP=5 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,4:5:85:.:85,0:0,1,0,4 ./.:.:6:0:6:0,0,0 +chrX 1763931 . C G 77 . AC=1;AF=0.500;AN=2;AS_AltDP=4;AS_QD=21.40;BaseQRankSum=0;DP=8;ExcessHet=0.0000;FS=0.000;MQ=28.36;MQRankSum=0;QD=21.40;ReadPosRankSum=-1.282;SOR=1.981;VarDP=5 GT:AD:DP:GQ:MIN_DP:PL:SB .:.:3:0:3:0,0 0/1:1,4:5:15:.:107,0,15:0,1,0,4 +chrX 1765253 . G A 4159 . AC=3;AF=1.00;AN=3;AS_AltDP=127;AS_QD=32.98;DP=130;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.98;SOR=0.916;VarDP=127 GT:AD:DP:GQ:PL:SB 1:0,63:63:99:2054,0:0,0,29,34 1/1:0,64:64:99:2135,192,0:0,0,28,36 +chrX 1765474 . G T 1164 . AC=2;AF=0.667;AN=3;AS_AltDP=72;AS_QD=9.48;BaseQRankSum=-0.212;DP=132;ExcessHet=0.0000;FS=4.335;MQ=60.00;MQRankSum=0;QD=9.48;ReadPosRankSum=-0.671;SOR=0.831;VarDP=126 GT:AD:DP:GQ:PL:SB 1:30,35:65:99:151,0:15,15,18,17 0/1:24,37:61:99:1043,0,621:10,14,22,15 +chrX 1765526 . T G 4286 . AC=3;AF=1.00;AN=3;AS_AltDP=138;AS_QD=31.28;DP=142;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.28;SOR=1.059;VarDP=138 GT:AD:DP:GQ:PL:SB 1:0,66:66:99:2072,0:0,0,26,40 1/1:0,72:72:99:2244,215,0:0,0,32,40 +chrX 1765686 . A G 477 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=8.31;BaseQRankSum=-0.854;DP=126;ExcessHet=0.0000;FS=1.026;MQ=60.00;MQRankSum=0;QD=8.31;ReadPosRankSum=0.496;SOR=0.873;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,302 0/1:39,22:61:99:.:507,0,1088:23,16,14,8 +chrX 1765902 . G A 619 . AC=2;AF=0.667;AN=3;AS_AltDP=46;AS_QD=6.98;BaseQRankSum=1.793;DP=96;ExcessHet=0.0000;FS=0.798;MQ=59.83;MQRankSum=0;QD=6.98;ReadPosRankSum=1.023;SOR=0.842;VarDP=93 GT:AD:DP:GQ:PL:SB 1:22,24:46:80:80,0:7,15,10,14 0/1:25,22:47:99:569,0,603:12,13,7,15 +chrX 1766002 . C CA 417.97 . AC=1;AF=0.500;AN=2;AS_AltDP=18;AS_QD=12.35;BaseQRankSum=0.321;DP=92;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=12.35;ReadPosRankSum=0.03;SOR=0.804;VarDP=37 GT:AD:DP:GQ:MIN_DP:PL:SB .:.:48:0:48:0,0 0/1:19,18:37:99:.:457,0,495:10,9,10,8 +chrX 1766154 . CGCAAAACAAAAGCAAA C 865.97 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=20.57;BaseQRankSum=1.933;DP=121;ExcessHet=0.0000;FS=0.000;MQ=59.08;MQRankSum=1.092;QD=20.57;ReadPosRankSum=0.809;SOR=0.700;VarDP=44 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:66:99:66:.:.:0,1414 0|1:21,23:44:99:.:0|1:1766154_CGCAAAACAAAAGCAAA_C:905,0,799:1766154:11,10,11,12 +chrX 1766155 . G T,* 3240 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=67,23;AS_QD=31.12,0.00;DP=132;ExcessHet=0.0000;FS=0.000;MQ=59.46;QD=36.33;SOR=1.292;VarDP=90 GT:AD:DP:GQ:PL:SB 1:0,49,0:49:99:1601,0,1723:0,0,11,30 1/2:0,18,23:41:99:1669,982,911,569,0,715:0,0,20,21 +chrX 1766171 . A T 879 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=21.64;BaseQRankSum=1.914;DP=116;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=21.64;ReadPosRankSum=1.163;SOR=0.693;VarDP=42 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:73:99:73:.:.:0,441 0|1:19,23:42:99:.:0|1:1766154_CGCAAAACAAAAGCAAA_C:909,0,729:1766154:10,9,11,12 +chrX 1766182 . A G 514 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=4.61;BaseQRankSum=0.443;DP=123;ExcessHet=0.0000;FS=2.405;MQ=59.68;MQRankSum=1.232;QD=4.61;ReadPosRankSum=0.1;SOR=0.953;VarDP=118 GT:AD:DP:GQ:PL:SB 1:31,45:76:99:102,0:12,19,12,33 0/1:25,17:42:99:442,0,970:12,13,11,6 +chrX 1766466 . T C 1235 . AC=2;AF=0.667;AN=3;AS_AltDP=70;AS_QD=10.72;BaseQRankSum=-1.164;DP=123;ExcessHet=0.0000;FS=1.501;MQ=60.00;MQRankSum=0;QD=10.72;ReadPosRankSum=-0.393;SOR=0.525;VarDP=118 GT:AD:DP:GQ:PL:SB 1:24,41:65:99:456,0:16,8,21,20 0/1:24,29:53:99:809,0,665:11,13,15,14 +chrX 1766678 . G A 1612 . AC=2;AF=0.667;AN=3;AS_AltDP=78;AS_QD=11.99;BaseQRankSum=1.291;DP=141;ExcessHet=0.0000;FS=0.000;MQ=59.84;MQRankSum=0;QD=11.99;ReadPosRankSum=0.244;SOR=0.695;VarDP=137 GT:AD:DP:GQ:PL:SB 1:24,38:62:99:497,0:10,14,15,23 0/1:35,40:75:99:1145,0,951:18,17,22,18 +chrX 1766996 . A G 873 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=15.84;BaseQRankSum=-0.446;DP=121;ExcessHet=0.0000;FS=5.393;MQ=60.00;MQRankSum=0;QD=15.84;ReadPosRankSum=-0.976;SOR=0.275;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,1419 0/1:23,34:57:99:.:903,0,579:15,8,17,17 +chrX 1767510 . T A 3584 . AC=3;AF=1.00;AN=3;AS_AltDP=108;AS_QD=33.46;DP=112;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.46;SOR=0.981;VarDP=108 GT:AD:DP:GQ:PL:SB 1:0,60:60:99:2006,0:0,0,32,28 1/1:0,48:48:99:1608,144,0:0,0,29,19 +chrX 1767783 . G A 418 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=10.93;BaseQRankSum=-0.335;DP=109;ExcessHet=0.0000;FS=0.000;MQ=59.24;MQRankSum=1.241;QD=10.93;ReadPosRankSum=1.722;SOR=0.701;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,1498 0/1:24,17:41:99:.:448,0,689:10,14,7,10 +chrX 1767813 . A G 2382 . AC=3;AF=1.00;AN=3;AS_AltDP=74;AS_QD=32.59;DP=76;ExcessHet=0.0000;FS=0.000;MQ=57.83;QD=32.59;SOR=0.927;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,43:43:99:1405,0:0,0,18,25 1/1:0,31:31:92:1007,92,0:0,0,15,16 +chrX 1767842 . C T 1384 . AC=2;AF=0.667;AN=3;AS_AltDP=44;AS_QD=24.38;BaseQRankSum=1.339;DP=59;ExcessHet=0.0000;FS=4.464;MQ=57.49;MQRankSum=-1.331;QD=24.38;ReadPosRankSum=1.534;SOR=0.575;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:1107,0:0,0,13,20 0/1:14,11:25:99:307,0,391:9,5,7,4 +chrX 1767863 . C CAAAA,CAA,CAAA 1965.97 . AC=1,1,1;AF=0.333,0.333,0.333;AN=3;AS_AltDP=31,8,14;AS_QD=31.81,28.43,29.58;DP=85;ExcessHet=0.0000;FS=0.000;MQ=57.32;QD=37.83;SOR=0.892;VarDP=53 GT:AD:DP:GQ:PL:SB 1:0,31,0,0:31:99:1190,0,1191,1191:0,0,9,22 2/3:0,0,8,14:22:94:815,647,585,273,267,196,169,162,0,94:0,0,15,7 +chrX 1768517 . A T 835 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=22.76;BaseQRankSum=-1.679;DP=93;ExcessHet=0.0000;FS=4.655;MQ=60.00;MQRankSum=0;QD=22.76;ReadPosRankSum=-0.031;SOR=0.589;VarDP=38 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:49:99:49:.:.:0,1052 0|1:16,22:38:99:.:0|1:1768517_A_T:865,0,581:1768517:10,6,10,12 +chrX 1768518 . T C 835 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=22.76;BaseQRankSum=-0.062;DP=94;ExcessHet=0.0000;FS=4.655;MQ=60.00;MQRankSum=0;QD=22.76;ReadPosRankSum=0.252;SOR=0.589;VarDP=38 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:49:99:49:.:.:0,1052 0|1:16,22:38:99:.:0|1:1768517_A_T:865,0,581:1768517:10,6,10,12 +chrX 1768552 . T TTC 2671.97 . AC=3;AF=1.00;AN=3;AS_AltDP=72;AS_QD=29.74;DP=86;ExcessHet=0.0000;FS=0.000;MQ=59.94;QD=37.65;SOR=1.778;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,40:40:99:1497,0:0,0,27,13 1/1:0,32:32:96:1214,96,0:0,0,23,9 +chrX 1768619 . T C 747 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=15.86;BaseQRankSum=-0.21;DP=118;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=15.86;ReadPosRankSum=-0.977;SOR=0.582;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:99:68:0,1326 0/1:20,29:49:99:.:777,0,479:11,9,15,14 +chrX 1768730 . ATTATT A 714.97 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=19.84;BaseQRankSum=0.29;DP=119;ExcessHet=0.0000;FS=4.536;MQ=60.00;MQRankSum=0;QD=19.84;ReadPosRankSum=-0.784;SOR=0.634;VarDP=38 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:99:68:0,1326 0/1:18,20:38:99:.:754,0,675:11,7,9,11 +chrX 1768760 . C A 2710 . AC=2;AF=0.667;AN=3;AS_AltDP=93;AS_QD=22.10;BaseQRankSum=1.724;DP=127;ExcessHet=0.0000;FS=0.794;MQ=60.00;MQRankSum=0;QD=22.10;ReadPosRankSum=-0.241;SOR=0.848;VarDP=124 GT:AD:DP:GQ:PL:SB 1:1,71:72:99:2237,0:0,1,43,28 0/1:30,22:52:99:503,0,1053:18,12,14,8 +chrX 1768825 . G A 1354 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=22.69;BaseQRankSum=0.476;DP=116;ExcessHet=0.0000;FS=3.610;MQ=60.00;MQRankSum=0;QD=22.69;ReadPosRankSum=-0.75;SOR=0.535;VarDP=61 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:65:34:55:.:.:0,34 0|1:25,36:61:99:.:0|1:1768825_G_A:1384,0,931:1768825:15,10,17,19 +chrX 1768834 . T C 1399 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=21.65;BaseQRankSum=-2.832;DP=121;ExcessHet=0.0000;FS=4.958;MQ=60.00;MQRankSum=0;QD=21.65;ReadPosRankSum=-0.48;SOR=0.882;VarDP=66 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:65:34:55:.:.:0,34 0|1:28,38:66:99:.:0|1:1768825_G_A:1429,0,1010:1768825:16,12,16,22 +chrX 1769088 . A C 707 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=21.06;BaseQRankSum=0;DP=90;ExcessHet=0.0000;FS=2.984;MQ=60.00;MQRankSum=0;QD=21.06;ReadPosRankSum=-1.145;SOR=1.270;VarDP=35 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:65:34:55:.:.:0,34 0|1:16,19:35:99:.:0|1:1769088_A_C:737,0,604:1769088:7,9,6,13 +chrX 1769092 . T C 677 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=20.79;BaseQRankSum=0.127;DP=90;ExcessHet=0.0000;FS=1.394;MQ=60.00;MQRankSum=0;QD=20.79;ReadPosRankSum=-0.449;SOR=1.165;VarDP=34 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:65:34:55:.:.:0,34 0|1:16,18:34:99:.:0|1:1769088_A_C:707,0,607:1769088:7,9,6,12 +chrX 1769296 . TTTATGCTGCTATAAGAAATACCTGAGTACCTGAGAC T 439.97 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=10.64;BaseQRankSum=0.36;DP=122;ExcessHet=0.0000;FS=11.776;MQ=60.00;MQRankSum=0;QD=10.64;ReadPosRankSum=0.214;SOR=1.782;VarDP=45 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:65:34:55:.:.:0,34 0|1:27,18:45:99:.:0|1:1769296_TTTATGCTGCTATAAGAAATACCTGAGTACCTGAGAC_T:479,0,1071:1769296:16,11,5,13 +chrX 1769298 . T C,* 3223 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=69,18;AS_QD=27.29,0.00;DP=108;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=37.39;SOR=0.917;VarDP=87 GT:AD:DP:GQ:PL:SB 1:0,49,0:49:99:1542,0,1542:0,0,21,28 1/2:0,20,18:38:99:1711,653,685,708,0,818:0,0,18,20 +chrX 1769335 . AGGTATTTCT A,* 611.97 . AC=1,0;AF=0.333,0.00;AN=3;AS_AltDP=18,0;AS_QD=13.85,0.00;BaseQRankSum=0.328;DP=107;ExcessHet=0.0000;FS=11.540;MQ=60.00;MQRankSum=0;QD=13.85;ReadPosRankSum=-0.383;SOR=1.786;VarDP=47 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:58:99:58:.:.:0,1364,1364 0|1:29,18,0:47:99:.:0|1:1769296_TTTATGCTGCTATAAGAAATACCTGAGTACCTGAGAC_T:651,0,1142,598,1202,1792:1769296:17,12,5,13 +chrX 1769695 . A G 602 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=11.09;BaseQRankSum=-2.935;DP=117;ExcessHet=0.0000;FS=3.671;MQ=60.00;MQRankSum=0;QD=11.09;ReadPosRankSum=2.006;SOR=0.346;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:58:99:58:0,1364 0/1:30,27:57:99:.:632,0,839:19,11,14,13 +chrX 1769729 . T C 2532 . AC=2;AF=0.667;AN=3;AS_AltDP=86;AS_QD=21.71;BaseQRankSum=0.169;DP=125;ExcessHet=0.0000;FS=5.105;MQ=59.96;MQRankSum=0;QD=21.71;ReadPosRankSum=-0.081;SOR=0.724;VarDP=118 GT:AD:DP:GQ:PL:SB 1:1,53:54:99:1718,0:1,0,19,34 0/1:31,33:64:99:844,0,774:17,14,20,13 +chrX 1769851 . C CA 1765.97 . AC=2;AF=0.667;AN=3;AS_AltDP=73;AS_QD=18.05;BaseQRankSum=-0.112;DP=112;ExcessHet=0.0000;FS=3.015;MQ=59.81;MQRankSum=0;QD=18.05;ReadPosRankSum=1.569;SOR=0.440;VarDP=100 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,41:42:99:.:.:1103,0:.:0,1,24,17 0|1:26,32:58:99:0|1:1769851_C_CA:702,0,654:1769851:11,15,13,19 +chrX 1769853 . A AC 604.97 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=10.56;BaseQRankSum=-0.255;DP=132;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=10.56;ReadPosRankSum=-0.379;SOR=0.602;VarDP=61 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:68:99:68:.:.:0,1551 0|1:35,26:61:99:.:1|0:1769851_C_CA:644,0,993:1769851:14,21,11,15 +chrX 1770302 . C T 2651 . AC=2;AF=0.667;AN=3;AS_AltDP=84;AS_QD=24.15;BaseQRankSum=1.476;DP=117;ExcessHet=0.0000;FS=0.831;MQ=60.00;MQRankSum=0;QD=24.15;ReadPosRankSum=0.402;SOR=0.821;VarDP=111 GT:AD:DP:GQ:PL:SB 1:0,62:62:99:2099,0:0,0,39,23 0/1:27,22:49:99:582,0,692:15,12,10,12 +chrX 1770364 . C T 851 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=16.94;BaseQRankSum=1.135;DP=118;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=16.94;ReadPosRankSum=0.121;SOR=0.616;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,1215 0/1:21,31:52:99:.:881,0,493:9,12,14,17 +chrX 1770996 . AT A,ATT,ATTTTTTTTT 578.97 . AC=1,1,1;AF=0.333,0.333,0.333;AN=3;AS_AltDP=35,13,4;AS_QD=13.50,8.43,3.60;BaseQRankSum=-0.81;DP=98;ExcessHet=0.0000;FS=0.000;MQ=59.83;MQRankSum=0;QD=11.66;ReadPosRankSum=0.744;SOR=0.614;VarDP=53 GT:AD:DP:GQ:PL:SB 2:1,9,13,0:23:99:118,143,0,268:0,1,6,16 1/3:0,26,0,4:30:14:500,63,14,555,83,770,482,0,745,932:0,0,12,18 +chrX 1772331 . C T 1697 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=33.21;DP=120;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.21;SOR=1.136;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:15:66:0,15 1/1:0,52:52:99:.:1727,155,0:0,0,21,31 +chrX 1772412 . C T 1573 . AC=2;AF=0.667;AN=3;AS_AltDP=48;AS_QD=33.40;DP=106;ExcessHet=0.0000;FS=0.000;MQ=59.92;QD=33.40;SOR=0.963;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:40:56:0,40 1/1:0,48:48:99:.:1603,144,0:0,0,27,21 +chrX 1772457 . T C 1771 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=32.16;DP=116;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.16;SOR=0.765;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:40:56:0,40 1/1:0,56:56:99:.:1801,168,0:0,0,27,29 +chrX 1772494 . A G 1831 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=31.02;DP=117;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.02;SOR=0.760;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:40:56:0,40 1/1:0,60:60:99:.:1861,179,0:0,0,31,29 +chrX 1772733 . C CA 663.97 . AC=2;AF=0.667;AN=3;AS_AltDP=28;AS_QD=25.11;DP=92;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=25.11;SOR=0.836;VarDP=28 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:40:56:0,40 1/1:0,28:28:83:.:703,83,0:0,0,13,15 +chrX 1773254 . CCTTTCTTTCTTT C 305.97 . AC=1;AF=1.00;AN=1;AS_AltDP=8;AS_QD=28.55;BaseQRankSum=-0.431;DP=24;ExcessHet=0.0000;FS=0.000;MQ=55.72;MQRankSum=-0.589;QD=38.33;ReadPosRankSum=0;SOR=1.609;VarDP=9 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,8:9:99:.:345,0:0,1,1,7 ./.:.:13:0:13:0,0,0 +chrX 1773356 . CT C 385.97 . AC=1;AF=1.00;AN=1;AS_AltDP=13;AS_QD=32.69;DP=44;ExcessHet=0.0000;FS=0.000;MQ=57.32;QD=32.69;SOR=1.179;VarDP=13 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,13:13:99:.:425,0:0,0,5,8 ./.:.:23:0:23:0,0,0 +chrX 1773453 . T C 1573 . AC=2;AF=1.00;AN=2;AS_AltDP=49;AS_QD=32.71;DP=124;ExcessHet=0.0000;FS=0.000;MQ=59.48;QD=32.71;SOR=0.909;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB .:.:73:0:73:0,0 1/1:0,49:49:99:.:1603,147,0:0,0,22,27 +chrX 1774155 . C T 2041 . AC=3;AF=1.00;AN=3;AS_AltDP=93;AS_QD=16.31;BaseQRankSum=3.396;DP=134;ExcessHet=0.0000;FS=4.948;MQ=60.00;MQRankSum=0;QD=16.31;ReadPosRankSum=0.34;SOR=0.743;VarDP=127 GT:AD:DP:GQ:PL:SB 1:34,37:71:99:241,0:19,15,13,24 1/1:0,56:56:99:1830,168,0:0,0,29,27 +chrX 1774196 . C T 2064 . AC=2;AF=0.667;AN=3;AS_AltDP=64;AS_QD=32.72;DP=130;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.72;SOR=1.044;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,421 1/1:0,64:64:99:.:2094,192,0:0,0,37,27 +chrX 1774322 . T G 1803 . AC=3;AF=1.00;AN=3;AS_AltDP=89;AS_QD=15.40;BaseQRankSum=-0.552;DP=128;ExcessHet=0.0000;FS=2.806;MQ=59.88;MQRankSum=1.625;QD=15.40;ReadPosRankSum=1.384;SOR=1.036;VarDP=119 GT:AD:DP:GQ:PL:SB 1:30,38:68:99:244,0:16,14,20,18 1/1:0,51:51:99:1589,152,0:0,0,34,17 +chrX 1774579 . GACCCCTGAGTTACAGC G 2934.97 . AC=2;AF=0.667;AN=3;AS_AltDP=66;AS_QD=27.86;DP=148;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=45.06;SOR=0.754;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:73:99:73:0,286 1/1:0,66:66:99:.:2974,201,0:0,0,32,34 +chrX 1775075 . CTTTTTTT C 1349.97 . AC=2;AF=0.667;AN=3;AS_AltDP=37;AS_QD=29.55;BaseQRankSum=-1.141;DP=104;ExcessHet=0.0000;FS=44.476;MQ=59.37;MQRankSum=1.735;QD=29.55;ReadPosRankSum=0.812;SOR=1.870;VarDP=47 GT:AD:DP:GQ:PL:SB 1:6,16:22:99:585,0:6,0,5,11 0/1:4,21:25:2:804,0,2:4,0,5,16 +chrX 1775224 . G A 4099 . AC=3;AF=1.00;AN=3;AS_AltDP=127;AS_QD=32.26;BaseQRankSum=-0.243;DP=129;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=32.26;ReadPosRankSum=-1.234;SOR=0.271;VarDP=128 GT:AD:DP:GQ:PL:SB 1:1,58:59:99:1931,0:0,1,29,29 1/1:0,69:69:99:2198,206,0:0,0,31,38 +chrX 1775457 . C T 2914 . AC=3;AF=1.00;AN=3;AS_AltDP=90;AS_QD=32.00;BaseQRankSum=1.634;DP=96;ExcessHet=0.0000;FS=3.058;MQ=59.83;MQRankSum=-0.102;QD=32.00;ReadPosRankSum=-0.099;SOR=0.184;VarDP=92 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:2,48:50:99:.:.:1504,0:.:2,0,24,24 1|1:0,42:42:99:0|1:1775457_C_T:1440,126,0:1775457:0,0,20,22 +chrX 1775671 . G C 3549 . AC=3;AF=1.00;AN=3;AS_AltDP=109;AS_QD=32.54;BaseQRankSum=3.561;DP=116;ExcessHet=0.0000;FS=0.000;MQ=59.77;MQRankSum=0;QD=32.54;ReadPosRankSum=-1.135;SOR=0.316;VarDP=110 GT:AD:DP:GQ:PL:SB 1:1,57:58:99:1932,0:0,1,23,34 1/1:0,52:52:99:1647,155,0:0,0,26,26 +chrX 1775805 . CT C 616.97 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=13.12;BaseQRankSum=-0.063;DP=133;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.12;ReadPosRankSum=0.01;SOR=0.682;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:71:99:71:0,634 0/1:21,29:50:99:.:656,0,403:10,11,15,14 +chrX 1775970 . ATT A 1822.97 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=27.79;BaseQRankSum=-0.897;DP=101;ExcessHet=0.0000;FS=22.595;MQ=58.49;MQRankSum=1.838;QD=27.79;ReadPosRankSum=-0.835;SOR=1.440;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,37:37:99:1216,0:0,0,13,24 0/1:5,25:30:61:646,0,61:5,0,7,18 +chrX 1776031 . C T 4169 . AC=3;AF=1.00;AN=3;AS_AltDP=94;AS_QD=34.06;DP=95;ExcessHet=0.0000;FS=0.000;MQ=59.44;QD=44.67;SOR=0.976;VarDP=94 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,53:53:99:.:.:2375,0:.:0,0,22,31 1|1:0,41:41:99:0|1:1776031_C_T:1824,123,0:1776031:0,0,19,22 +chrX 1776044 . C A 4335 . AC=3;AF=1.00;AN=3;AS_AltDP=97;AS_QD=25.66;DP=98;ExcessHet=0.0000;FS=0.000;MQ=59.63;QD=45.00;SOR=0.992;VarDP=97 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,57:57:99:.:.:2565,0:.:0,0,23,34 1|1:0,40:40:99:0|1:1776031_C_T:1800,120,0:1776031:0,0,19,21 +chrX 1776069 . C T 4784 . AC=3;AF=1.00;AN=3;AS_AltDP=107;AS_QD=33.23;DP=108;ExcessHet=0.0000;FS=0.000;MQ=59.79;QD=44.99;SOR=0.830;VarDP=107 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,66:66:99:.:.:2970,0:.:0,0,30,36 1|1:0,41:41:99:0|1:1776031_C_T:1844,123,0:1776031:0,0,20,21 +chrX 1776070 . C G 4784 . AC=3;AF=1.00;AN=3;AS_AltDP=107;AS_QD=32.52;DP=109;ExcessHet=0.0000;FS=0.000;MQ=59.79;QD=44.99;SOR=0.830;VarDP=107 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,66:66:99:.:.:2970,0:.:0,0,30,36 1|1:0,41:41:99:0|1:1776031_C_T:1844,123,0:1776031:0,0,20,21 +chrX 1777272 . T C 4673 . AC=3;AF=1.00;AN=3;AS_AltDP=109;AS_QD=31.22;DP=113;ExcessHet=0.0000;FS=0.000;MQ=59.85;QD=43.15;SOR=1.002;VarDP=109 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,53:53:99:.:.:2266,0:.:0,0,27,26 1|1:0,56:56:99:0|1:1777272_T_C:2437,169,0:1777272:0,0,20,36 +chrX 1777281 . A G 4521 . AC=3;AF=1.00;AN=3;AS_AltDP=105;AS_QD=28.51;DP=111;ExcessHet=0.0000;FS=0.000;MQ=59.85;QD=43.34;SOR=1.064;VarDP=105 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,51:51:99:.:.:2193,0:.:0,0,24,27 1|1:0,54:54:99:0|1:1777272_T_C:2358,163,0:1777272:0,0,20,34 +chrX 1777431 . G A 4203 . AC=3;AF=1.00;AN=3;AS_AltDP=129;AS_QD=32.81;DP=133;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.81;SOR=0.806;VarDP=129 GT:AD:DP:GQ:PL:SB 1:0,73:73:99:2402,0:0,0,33,40 1/1:0,56:56:99:1831,168,0:0,0,35,21 +chrX 1777539 . G A 3510 . AC=3;AF=1.00;AN=3;AS_AltDP=110;AS_QD=32.18;DP=115;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.18;SOR=0.767;VarDP=110 GT:AD:DP:GQ:PL:SB 1:0,60:60:99:1963,0:0,0,30,30 1/1:0,50:50:99:1577,149,0:0,0,23,27 +chrX 1777621 . AAGTC A 5012.97 . AC=3;AF=1.00;AN=3;AS_AltDP=115;AS_QD=25.01;DP=120;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.93;SOR=1.121;VarDP=115 GT:AD:DP:GQ:PL:SB 1:0,66:66:99:2879,0:0,0,39,27 1/1:0,49:49:99:2173,148,0:0,0,29,20 +chrX 1777721 . G C 4291 . AC=3;AF=1.00;AN=3;AS_AltDP=132;AS_QD=32.73;DP=137;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.73;SOR=1.038;VarDP=132 GT:AD:DP:GQ:PL:SB 1:0,75:75:99:2416,0:0,0,44,31 1/1:0,57:57:99:1905,171,0:0,0,32,25 +chrX 1778546 . T C 3826 . AC=3;AF=1.00;AN=3;AS_AltDP=118;AS_QD=32.68;DP=122;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.68;SOR=0.798;VarDP=118 GT:AD:DP:GQ:PL:SB 1:0,62:62:99:2035,0:0,0,32,30 1/1:0,56:56:99:1821,168,0:0,0,30,26 +chrX 1779435 . G T 4365 . AC=3;AF=1.00;AN=3;AS_AltDP=136;AS_QD=32.32;DP=139;ExcessHet=0.0000;FS=0.000;MQ=59.97;QD=32.32;SOR=0.953;VarDP=136 GT:AD:DP:GQ:PL:SB 1:0,68:68:99:2243,0:0,0,28,40 1/1:0,68:68:99:2152,203,0:0,0,32,36 +chrX 1779450 . C A 4465 . AC=3;AF=1.00;AN=3;AS_AltDP=136;AS_QD=33.05;DP=139;ExcessHet=0.0000;FS=0.000;MQ=59.97;QD=33.05;SOR=0.849;VarDP=136 GT:AD:DP:GQ:PL:SB 1:0,71:71:99:2281,0:0,0,31,40 1/1:0,65:65:99:2214,195,0:0,0,32,33 +chrX 1779482 . C G 4032 . AC=3;AF=1.00;AN=3;AS_AltDP=127;AS_QD=31.98;DP=129;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.98;SOR=0.774;VarDP=127 GT:AD:DP:GQ:PL:SB 1:0,70:70:99:2257,0:0,0,35,35 1/1:0,57:57:99:1805,170,0:0,0,31,26 +chrX 1779555 . C T 4160 . AC=3;AF=1.00;AN=3;AS_AltDP=123;AS_QD=34.07;DP=128;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=34.07;SOR=0.924;VarDP=123 GT:AD:DP:GQ:PL:SB 1:0,70:70:99:2403,0:0,0,38,32 1/1:0,53:53:99:1787,159,0:0,0,30,23 +chrX 1779939 . TTAGAG T 5509.97 . AC=3;AF=1.00;AN=3;AS_AltDP=125;AS_QD=28.69;DP=135;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.39;SOR=0.882;VarDP=125 GT:AD:DP:GQ:PL:SB 1:0,59:59:99:2625,0:0,0,27,32 1/1:0,66:66:99:2924,199,0:0,0,41,25 +chrX 1779973 . T G 4164 . AC=3;AF=1.00;AN=3;AS_AltDP=133;AS_QD=31.53;DP=140;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.53;SOR=0.708;VarDP=133 GT:AD:DP:GQ:PL:SB 1:0,63:63:99:2048,0:0,0,26,37 1/1:0,70:70:99:2146,208,0:0,0,40,30 +chrX 1780139 . T C 734 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=11.24;BaseQRankSum=2.259;DP=132;ExcessHet=0.0000;FS=0.932;MQ=60.00;MQRankSum=0;QD=11.24;ReadPosRankSum=0.763;SOR=0.529;VarDP=68 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,1569 0/1:39,29:68:99:.:764,0,986:17,22,14,15 +chrX 1780290 . CT C 366.97 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=8.46;BaseQRankSum=-1.894;DP=117;ExcessHet=0.0000;FS=1.127;MQ=60.00;MQRankSum=0;QD=8.46;ReadPosRankSum=-0.811;SOR=0.615;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,1569 0/1:27,21:48:99:.:406,0,556:12,15,11,10 +chrX 1780457 . C T 727 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=20.46;BaseQRankSum=1.139;DP=102;ExcessHet=0.0000;FS=2.884;MQ=60.00;MQRankSum=0;QD=20.46;ReadPosRankSum=-0.275;SOR=0.677;VarDP=37 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:64:99:64:.:.:0,1569 0|1:17,20:37:99:.:0|1:1780457_C_T:757,0,612:1780457:7,10,11,9 +chrX 1780476 . C T 2397 . AC=2;AF=0.667;AN=3;AS_AltDP=71;AS_QD=26.97;BaseQRankSum=1.463;DP=92;ExcessHet=0.0000;FS=5.108;MQ=60.00;MQRankSum=0;QD=26.97;ReadPosRankSum=0.989;SOR=0.790;VarDP=90 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,50:50:99:.:.:1644,0:.:0,0,19,31 0|1:19,21:40:99:0|1:1780457_C_T:783,0,652:1780457:11,8,12,9 +chrX 1781035 . C CT 96.97 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=3.58;BaseQRankSum=0.901;DP=111;ExcessHet=0.0000;FS=10.043;MQ=59.61;MQRankSum=1.226;QD=3.58;ReadPosRankSum=-0.577;SOR=1.483;VarDP=38 GT:AD:DP:GQ:MIN_DP:PL:SB 1:16,22:38:99:.:136,0:10,6,7,15 0/0:.:59:53:59:0,53,1262 +chrX 1781364 . AAG A 225.97 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=4.57;BaseQRankSum=-0.407;DP=121;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=4.57;ReadPosRankSum=0.188;SOR=0.591;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 1:26,32:58:99:.:265,0:17,9,20,12 0/0:.:59:53:59:0,53,1262 +chrX 1781419 . T C 189 . AC=1;AF=0.333;AN=3;AS_AltDP=41;AS_QD=2.92;BaseQRankSum=0.061;DP=137;ExcessHet=0.0000;FS=1.943;MQ=60.00;MQRankSum=0;QD=2.92;ReadPosRankSum=0.745;SOR=0.480;VarDP=75 GT:AD:DP:GQ:MIN_DP:PL:SB 1:34,41:75:99:.:219,0:22,12,24,17 0/0:.:59:53:59:0,53,1262 +chrX 1782242 . C CTT 32.97 . AC=1;AF=0.333;AN=3;AS_AltDP=7;AS_QD=3.43;BaseQRankSum=0.881;DP=101;ExcessHet=0.0000;FS=12.555;MQ=58.36;MQRankSum=-3.013;QD=3.43;ReadPosRankSum=-2.427;SOR=1.414;VarDP=21 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:55:56:41:0,56 0/1:14,7:21:72:.:72,0,350:3,11,5,2 +chrX 1782894 . G C 109 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=3.02;BaseQRankSum=0.362;DP=86;ExcessHet=0.0000;FS=1.142;MQ=60.00;MQRankSum=0;QD=3.02;ReadPosRankSum=1.07;SOR=0.498;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 1:21,25:46:99:.:139,0:13,8,14,11 0/0:.:54:33:39:0,33,870 +chrX 1786554 . T C 58 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=1.44;BaseQRankSum=-1.077;DP=100;ExcessHet=0.0000;FS=2.130;MQ=60.00;MQRankSum=0;QD=1.44;ReadPosRankSum=0.304;SOR=1.022;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 1:28,33:61:88:.:88,0:14,14,19,14 0/0:.:54:33:39:0,33,870 +chrX 1788188 . A G 120 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=2.17;BaseQRankSum=1.183;DP=111;ExcessHet=0.0000;FS=2.015;MQ=60.00;MQRankSum=0;QD=2.17;ReadPosRankSum=2.932;SOR=0.976;VarDP=69 GT:AD:DP:GQ:MIN_DP:PL:SB 1:33,36:69:99:.:150,0:14,19,13,23 0/0:.:54:33:39:0,33,870 +chrX 1788217 . C CCTGA 567.97 . AC=1;AF=0.333;AN=3;AS_AltDP=43;AS_QD=8.32;BaseQRankSum=-1.526;DP=113;ExcessHet=0.0000;FS=3.224;MQ=60.00;MQRankSum=0;QD=8.32;ReadPosRankSum=0.774;SOR=1.094;VarDP=73 GT:AD:DP:GQ:MIN_DP:PL:SB 1:30,43:73:99:.:607,0:13,17,15,28 0/0:.:54:33:39:0,33,870 +chrX 1789358 . T C 332 . AC=1;AF=0.333;AN=3;AS_AltDP=40;AS_QD=5.25;BaseQRankSum=-0.263;DP=109;ExcessHet=0.0000;FS=3.605;MQ=59.85;MQRankSum=0.272;QD=5.25;ReadPosRankSum=0.645;SOR=1.251;VarDP=69 GT:AD:DP:GQ:MIN_DP:PL:SB 1:29,40:69:99:.:362,0:18,11,29,11 0/0:.:54:33:39:0,33,870 +chrX 1789402 . G A 176 . AC=1;AF=0.333;AN=3;AS_AltDP=39;AS_QD=2.75;BaseQRankSum=2.806;DP=116;ExcessHet=0.0000;FS=1.977;MQ=59.78;MQRankSum=-0.469;QD=2.75;ReadPosRankSum=0.382;SOR=0.947;VarDP=75 GT:AD:DP:GQ:MIN_DP:PL:SB 1:36,39:75:99:.:206,0:23,13,27,12 0/0:.:54:33:39:0,33,870 +chrX 1790144 . A C 373 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=7.90;BaseQRankSum=1.469;DP=94;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=7.90;ReadPosRankSum=0.145;SOR=0.756;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 1:20,31:51:99:.:403,0:10,10,16,15 0/0:.:54:33:39:0,33,870 +chrX 1790593 . C T 99 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=2.30;BaseQRankSum=-0.708;DP=99;ExcessHet=0.0000;FS=7.530;MQ=59.84;MQRankSum=-1.303;QD=2.30;ReadPosRankSum=-1.184;SOR=1.481;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 1:26,30:56:99:.:129,0:14,12,10,20 0/0:.:54:33:39:0,33,870 +chrX 1790723 . T TA 177.97 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=10.33;BaseQRankSum=0.171;DP=102;ExcessHet=0.0000;FS=0.000;MQ=57.86;MQRankSum=-1.473;QD=10.33;ReadPosRankSum=-0.262;SOR=1.022;VarDP=21 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:58:99:58:.:.:0,1023 0|1:7,14:21:75:.:0|1:1790723_T_TA:217,0,75:1790723:3,4,5,9 +chrX 1790732 . A AC 214.97 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=5.29;BaseQRankSum=-1.044;DP=87;ExcessHet=0.0000;FS=0.000;MQ=58.01;MQRankSum=-0.506;QD=5.29;ReadPosRankSum=-2.82;SOR=0.675;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 1:21,27:48:99:.:254,0:10,11,13,14 0/0:.:41:54:36:0,54,990 +chrX 1790734 . A AAAAACAAAAAAC 259.97 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=6.10;BaseQRankSum=0.658;DP=87;ExcessHet=0.0000;FS=0.000;MQ=58.01;MQRankSum=-0.461;QD=6.10;ReadPosRankSum=-2.653;SOR=0.610;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 1:21,28:49:99:.:299,0:10,11,14,14 0/0:.:41:54:36:0,54,990 +chrX 1791141 . C T 287 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=4.95;BaseQRankSum=-0.716;DP=109;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=4.95;ReadPosRankSum=-0.49;SOR=0.683;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 1:27,37:64:99:.:317,0:13,14,19,18 0/0:.:49:36:45:0,36,1157 +chrX 1791167 . AC A,CC 244 . AC=1,0;AF=0.333,0.00;AN=3;AS_AltDP=34,2;AS_QD=4.72,0.00;BaseQRankSum=-0.535;DP=106;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=4.57;ReadPosRankSum=-0.151;SOR=0.646;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 1:24,34,2:60:99:.:274,0,1491:13,11,19,17 0/0:.:49:36:45:0,36,1157,36,1157,1157 +chrX 1791355 . T C 164 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=3.08;BaseQRankSum=0.945;DP=110;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=3.08;ReadPosRankSum=-1.794;SOR=0.578;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 1:29,34:63:99:.:194,0:11,18,14,20 0/0:.:49:36:45:0,36,1157 +chrX 1791797 . G GT 711.97 . AC=1;AF=0.333;AN=3;AS_AltDP=44;AS_QD=10.58;BaseQRankSum=1.482;DP=119;ExcessHet=0.0000;FS=10.524;MQ=59.94;MQRankSum=-0.754;QD=10.58;ReadPosRankSum=1.043;SOR=1.429;VarDP=71 GT:AD:DP:GQ:MIN_DP:PL:SB 1:27,44:71:99:.:751,0:12,15,29,15 0/0:.:49:36:45:0,36,1157 +chrX 1791798 . C T 721 . AC=1;AF=0.333;AN=3;AS_AltDP=44;AS_QD=10.58;BaseQRankSum=-0.189;DP=119;ExcessHet=0.0000;FS=10.524;MQ=59.94;MQRankSum=-0.754;QD=10.58;ReadPosRankSum=1.132;SOR=1.429;VarDP=71 GT:AD:DP:GQ:MIN_DP:PL:SB 1:27,44:71:99:.:751,0:12,15,29,15 0/0:.:49:36:45:0,36,1157 +chrX 1791941 . A AAAT 40.97 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=1.33;BaseQRankSum=-1.199;DP=107;ExcessHet=0.0000;FS=3.617;MQ=60.00;MQRankSum=0;QD=1.33;ReadPosRankSum=0.791;SOR=1.329;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 1:30,30:60:80:.:80,0:15,15,11,19 0/0:.:49:36:45:0,36,1157 +chrX 1792756 . T C 603 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=11.11;BaseQRankSum=-0.176;DP=98;ExcessHet=0.0000;FS=1.004;MQ=59.98;MQRankSum=-1.096;QD=11.11;ReadPosRankSum=1.512;SOR=0.544;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:41:99:41:0,214 0/1:32,25:57:99:.:633,0,881:18,14,13,12 +chrX 1793922 . T TA 362.97 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=7.58;BaseQRankSum=-1.044;DP=117;ExcessHet=0.0000;FS=1.286;MQ=60.00;MQRankSum=0;QD=7.58;ReadPosRankSum=0.366;SOR=0.941;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 1:22,31:53:99:.:402,0:7,15,5,14 0/0:.:62:78:62:0,78,1340 +chrX 1794201 . TGATAGATA T,TGATA 2753.97 . AC=1,2;AF=0.333,0.667;AN=3;AS_AltDP=23,59;AS_QD=28.81,27.35;DP=117;ExcessHet=0.0000;FS=3.063;MQ=59.67;MQRankSum=6.559;QD=33.65;SOR=0.300;VarDP=83 GT:AD:DP:GQ:PL:SB 1:0,23,18:41:99:972,0,174:0,0,20,21 2/2:1,0,41:42:99:1821,1823,1824,122,124,0:0,1,22,19 +chrX 1794271 . GTAGA G 197.97 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=3.89;BaseQRankSum=-0.297;DP=124;ExcessHet=0.0000;FS=2.130;MQ=59.95;MQRankSum=-0.888;QD=3.89;ReadPosRankSum=-0.721;SOR=1.022;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 1:28,33:61:99:.:237,0:14,14,19,14 0/0:.:61:96:61:0,96,1269 +chrX 1796037 . G A 56 . AC=1;AF=0.333;AN=3;AS_AltDP=39;AS_QD=1.10;BaseQRankSum=0.458;DP=109;ExcessHet=0.0000;FS=5.896;MQ=60.00;MQRankSum=0;QD=1.10;ReadPosRankSum=0.887;SOR=0.758;VarDP=78 GT:AD:DP:GQ:MIN_DP:PL:SB 1:39,39:78:86:.:86,0:16,23,22,17 0/0:.:36:23:29:0,23,790 +chrX 1796049 . ATG A 150.97 . AC=1;AF=0.333;AN=3;AS_AltDP=41;AS_QD=2.44;BaseQRankSum=0.149;DP=108;ExcessHet=0.0000;FS=9.361;MQ=60.00;MQRankSum=0;QD=2.44;ReadPosRankSum=0.603;SOR=0.492;VarDP=78 GT:AD:DP:GQ:MIN_DP:PL:SB 1:37,41:78:99:.:190,0:13,24,22,19 0/0:.:36:23:29:0,23,790 +chrX 1796175 . C CGTGT 569.97 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=10.15;BaseQRankSum=-1.284;DP=93;ExcessHet=0.0000;FS=3.652;MQ=60.00;MQRankSum=0;QD=10.15;ReadPosRankSum=-0.453;SOR=1.071;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 1:23,37:60:99:.:609,0:11,12,22,15 0/0:.:36:23:29:0,23,790 +chrX 1796186 . GTA G 545.97 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=9.59;BaseQRankSum=-0.838;DP=90;ExcessHet=0.0000;FS=1.008;MQ=60.00;MQRankSum=0;QD=9.59;ReadPosRankSum=-0.236;SOR=0.984;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 1:24,37:61:99:.:585,0:12,12,21,16 0/0:.:36:23:29:0,23,790 +chrX 1796198 . A G 486 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=9.05;BaseQRankSum=0.539;DP=87;ExcessHet=0.0000;FS=1.004;MQ=60.00;MQRankSum=0;QD=9.05;ReadPosRankSum=0.293;SOR=0.846;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 1:23,34:57:99:.:516,0:12,11,19,15 0/0:.:36:23:29:0,23,790 +chrX 1796252 . ATG A 175.97 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=4.22;BaseQRankSum=-0.111;DP=86;ExcessHet=0.0000;FS=1.072;MQ=60.00;MQRankSum=0;QD=4.22;ReadPosRankSum=1.506;SOR=0.769;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 1:23,28:51:99:.:215,0:12,11,13,15 0/0:.:36:23:29:0,23,790 +chrX 1796398 . A G 1381 . AC=2;AF=1.00;AN=2;AS_AltDP=45;AS_QD=31.36;DP=118;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.36;SOR=0.829;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB .:.:70:0:70:0,0 1/1:0,45:45:99:.:1411,134,0:0,0,21,24 +chrX 1796448 . G GTGTGCA 46.97 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=1.41;BaseQRankSum=1.819;DP=117;ExcessHet=0.0000;FS=1.050;MQ=60.00;MQRankSum=0;QD=1.41;ReadPosRankSum=2.551;SOR=0.609;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 1:29,32:61:86:.:86,0:13,16,13,12 0/0:.:56:40:56:0,40,649 +chrX 1796452 . G GTATA 81.97 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=1.98;BaseQRankSum=1.831;DP=119;ExcessHet=0.0000;FS=1.050;MQ=60.00;MQRankSum=0;QD=1.98;ReadPosRankSum=2.404;SOR=0.609;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 1:29,32:61:99:.:121,0:13,16,13,12 0/0:.:56:40:56:0,40,649 +chrX 1796528 . T C 242 . AC=1;AF=0.333;AN=3;AS_AltDP=41;AS_QD=3.78;BaseQRankSum=-1.053;DP=129;ExcessHet=0.0000;FS=6.248;MQ=60.00;MQRankSum=0;QD=3.78;ReadPosRankSum=-0.939;SOR=1.408;VarDP=72 GT:AD:DP:GQ:MIN_DP:PL:SB 1:31,41:72:99:.:272,0:15,16,14,27 0/0:.:56:40:56:0,40,649 +chrX 1799212 . A T 471 . AC=1;AF=0.333;AN=3;AS_AltDP=40;AS_QD=7.71;BaseQRankSum=-0.024;DP=122;ExcessHet=0.0000;FS=6.708;MQ=60.00;MQRankSum=0;QD=7.71;ReadPosRankSum=-0.02;SOR=0.442;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 1:25,40:65:99:.:501,0:16,9,19,21 0/0:.:56:40:56:0,40,649 +chrX 1801487 . TTATC T 557.97 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=11.71;BaseQRankSum=-1.338;DP=112;ExcessHet=0.0000;FS=5.839;MQ=60.00;MQRankSum=0;QD=11.71;ReadPosRankSum=-0.867;SOR=0.957;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 1:19,32:51:99:.:597,0:11,8,13,19 0/0:.:56:40:56:0,40,649 +chrX 1803576 . CATCTAT C 500.97 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=10.38;BaseQRankSum=-1.681;DP=108;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=10.38;ReadPosRankSum=0.83;SOR=0.818;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 1:20,32:52:99:.:540,0:10,10,17,15 0/0:.:56:40:56:0,40,649 +chrX 1803586 . CT C 455.97 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=9.34;BaseQRankSum=-0.587;DP=109;ExcessHet=0.0000;FS=1.067;MQ=60.00;MQRankSum=0;QD=9.34;ReadPosRankSum=1.865;SOR=0.745;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 1:21,32:53:99:.:495,0:10,11,17,15 0/0:.:56:40:56:0,40,649 +chrX 1803593 . TC T 410.97 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=8.33;BaseQRankSum=-0.62;DP=110;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=8.33;ReadPosRankSum=1.801;SOR=0.818;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 1:22,32:54:99:.:450,0:11,11,17,15 0/0:.:56:40:56:0,40,649 +chrX 1803878 . A G 675 . AC=1;AF=0.333;AN=3;AS_AltDP=43;AS_QD=11.02;BaseQRankSum=-1.285;DP=125;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=11.02;ReadPosRankSum=0.15;SOR=0.746;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 1:21,43:64:99:.:705,0:9,12,18,25 0/0:.:56:40:56:0,40,649 +chrX 1805259 . G A 46 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=1.07;BaseQRankSum=1.273;DP=127;ExcessHet=0.0000;FS=4.670;MQ=59.93;MQRankSum=1.042;QD=1.07;ReadPosRankSum=0.443;SOR=1.291;VarDP=71 GT:AD:DP:GQ:MIN_DP:PL:SB 1:35,36:71:76:.:76,0:18,17,23,13 0/0:.:50:65:50:0,65,1003 +chrX 1805589 . C T 270 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=4.55;BaseQRankSum=0.861;DP=117;ExcessHet=0.0000;FS=0.945;MQ=60.00;MQRankSum=0;QD=4.55;ReadPosRankSum=-0.433;SOR=0.806;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 1:29,37:66:99:.:300,0:14,15,20,17 0/0:.:50:65:50:0,65,1003 +chrX 1806933 . C CAAT,CAATAAT 1896.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=29,17;AS_QD=29.66,31.75;DP=123;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=42.09;SOR=1.203;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,689,689 1/2:0,29,17:46:99:.:1936,689,583,1108,0,1030:0,0,18,28 +chrX 1807548 . G T 53 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=1.66;BaseQRankSum=-0.194;DP=131;ExcessHet=0.0000;FS=49.061;MQ=58.87;MQRankSum=-1.129;QD=1.66;ReadPosRankSum=3.286;SOR=5.890;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,689 0/1:32,18:50:83:.:83,0,882:13,19,18,0 +chrX 1807691 . CG C 169.97 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=4.64;BaseQRankSum=2.085;DP=106;ExcessHet=0.0000;FS=4.579;MQ=60.00;MQRankSum=0;QD=4.64;ReadPosRankSum=-0.663;SOR=1.593;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 1:20,25:45:99:.:209,0:11,9,18,7 0/0:.:61:67:61:0,67,958 +chrX 1807772 . G A 269 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=6.50;BaseQRankSum=0.388;DP=107;ExcessHet=0.0000;FS=8.705;MQ=60.00;MQRankSum=0;QD=6.50;ReadPosRankSum=-0.257;SOR=1.429;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 1:19,27:46:99:.:299,0:8,11,18,9 0/0:.:61:67:61:0,67,958 +chrX 1807878 . A G 142 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=3.07;BaseQRankSum=-1.064;DP=121;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=3.07;ReadPosRankSum=-0.149;SOR=0.818;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 1:24,32:56:99:.:172,0:12,12,15,17 0/0:.:61:67:61:0,67,958 +chrX 1807913 . G A 458 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=8.00;BaseQRankSum=1.473;DP=123;ExcessHet=0.0000;FS=0.998;MQ=59.73;MQRankSum=-0.772;QD=8.00;ReadPosRankSum=-0.96;SOR=0.611;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 1:24,37:61:99:.:488,0:13,11,18,19 0/0:.:61:67:61:0,67,958 +chrX 1808939 . T TTA 717.97 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=16.11;BaseQRankSum=-1.918;DP=122;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=16.11;ReadPosRankSum=-0.555;SOR=0.732;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,1375 0/1:22,25:47:99:.:757,0,668:9,13,10,15 +chrX 1809568 . CATAT CAT,C 698.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=18,15;AS_QD=3.55,15.10;BaseQRankSum=0.69;DP=86;ExcessHet=0.0000;FS=5.587;MQ=59.87;MQRankSum=1.197;QD=12.95;ReadPosRankSum=0.799;SOR=1.542;VarDP=57 GT:AD:DP:GQ:PL:SB 1:14,18,0:32:99:149,0,588:8,6,3,15 0/2:10,0,15:25:99:589,620,1039,0,420,374:4,6,8,7 +chrX 1810649 . C T 336 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=6.42;BaseQRankSum=1.373;DP=95;ExcessHet=0.0000;FS=11.823;MQ=60.00;MQRankSum=0;QD=6.42;ReadPosRankSum=-1.116;SOR=0.475;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 1:24,33:57:99:.:366,0:7,17,18,15 0/0:.:57:34:36:0,34,952 +chrX 1810712 . T C 232 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=4.76;BaseQRankSum=2.376;DP=95;ExcessHet=0.0000;FS=2.549;MQ=59.75;MQRankSum=1.132;QD=4.76;ReadPosRankSum=1.581;SOR=0.369;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 1:25,30:55:99:.:262,0:6,19,10,20 0/0:.:57:34:36:0,34,952 +chrX 1811275 . C T 100 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=3.33;BaseQRankSum=0.755;DP=75;ExcessHet=0.0000;FS=9.750;MQ=59.45;MQRankSum=1.584;QD=3.33;ReadPosRankSum=-0.423;SOR=0.628;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 1:18,21:39:99:.:130,0:5,13,12,9 0/0:.:57:34:36:0,34,952 +chrX 1812520 . G A 33 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=0.98;BaseQRankSum=-1.848;DP=103;ExcessHet=0.0000;FS=6.623;MQ=60.00;MQRankSum=0;QD=0.984;ReadPosRankSum=0.72;SOR=0.476;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 1:30,34:64:63:.:63,0:19,11,16,18 0/0:.:57:34:36:0,34,952 +chrX 1813077 . G A 210 . AC=1;AF=0.333;AN=3;AS_AltDP=45;AS_QD=2.76;BaseQRankSum=2.945;DP=128;ExcessHet=0.0000;FS=1.894;MQ=59.64;MQRankSum=-1.358;QD=2.76;ReadPosRankSum=0.178;SOR=1.035;VarDP=87 GT:AD:DP:GQ:MIN_DP:PL:SB 1:42,45:87:99:.:240,0:27,15,32,13 0/0:.:57:34:36:0,34,952 +chrX 1813119 . T C 160 . AC=1;AF=0.333;AN=3;AS_AltDP=44;AS_QD=2.26;BaseQRankSum=0.535;DP=122;ExcessHet=0.0000;FS=4.484;MQ=59.81;MQRankSum=-0.93;QD=2.26;ReadPosRankSum=-0.287;SOR=1.236;VarDP=84 GT:AD:DP:GQ:MIN_DP:PL:SB 1:40,44:84:99:.:190,0:25,15,32,12 0/0:.:57:34:36:0,34,952 +chrX 1813221 . C T 133 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=2.59;BaseQRankSum=3.537;DP=102;ExcessHet=0.0000;FS=3.663;MQ=59.24;MQRankSum=1.426;QD=2.59;ReadPosRankSum=1.293;SOR=1.279;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 1:32,31:63:99:.:163,0:13,19,9,22 0/0:.:57:34:36:0,34,952 +chrX 1815665 . A ATATTT 843.97 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=24.53;BaseQRankSum=-1.505;DP=89;ExcessHet=0.0000;FS=0.000;MQ=59.91;MQRankSum=-0.468;QD=24.53;ReadPosRankSum=0.362;SOR=0.871;VarDP=36 GT:AD:DP:GQ:MIN_DP:PL:SB 1:8,28:36:99:.:883,0:6,2,21,7 0/0:.:57:34:36:0,34,952 +chrX 1817115 . C CACAACAGTAATATGATACTACCGCCGCATGGGAGCAGTAATAACA 328.97 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=16.73;BaseQRankSum=0.811;DP=89;ExcessHet=0.0000;FS=1.971;MQ=55.55;MQRankSum=-1.456;QD=16.73;ReadPosRankSum=-1.763;SOR=0.654;VarDP=22 GT:AD:DP:GQ:MIN_DP:PL:SB 1:6,16:22:99:.:368,0:4,2,7,9 0/0:.:46:46:46:0,46,997 +chrX 1818167 . T TGA 1589.97 . AC=3;AF=1.00;AN=3;AS_AltDP=37;AS_QD=30.26;DP=44;ExcessHet=0.0000;FS=0.000;MQ=44.82;QD=44.03;SOR=0.859;VarDP=37 GT:AD:DP:GQ:PL:SB 1:0,16:16:99:709,0:0,0,8,8 1/1:0,21:21:63:920,63,0:0,0,12,9 +chrX 1822158 . C T 494 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=10.08;BaseQRankSum=0.358;DP=114;ExcessHet=0.0000;FS=23.647;MQ=60.00;MQRankSum=0;QD=10.08;ReadPosRankSum=-0.69;SOR=1.689;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:99:56:0,547 0/1:31,21:52:99:.:524,0,797:22,9,6,15 +chrX 1823508 . G A 53 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=1.63;BaseQRankSum=0.994;DP=115;ExcessHet=0.0000;FS=7.826;MQ=60.00;MQRankSum=0;QD=1.63;ReadPosRankSum=-0.226;SOR=1.051;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 1:25,26:51:83:.:83,0:15,10,10,16 0/0:.:61:48:61:0,48,1117 +chrX 1825337 . C T 219 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=7.55;BaseQRankSum=0.65;DP=91;ExcessHet=0.0000;FS=1.414;MQ=59.61;MQRankSum=1.302;QD=7.55;ReadPosRankSum=-0.904;SOR=0.368;VarDP=33 GT:AD:DP:GQ:MIN_DP:PL:SB 1:13,20:33:99:.:249,0:5,8,10,10 0/0:.:55:36:55:0,36,1236 +chrX 1825558 . T C 73 . AC=1;AF=0.333;AN=3;AS_AltDP=10;AS_QD=2.24;BaseQRankSum=-3.023;DP=111;ExcessHet=0.0000;FS=1.411;MQ=59.19;MQRankSum=1.117;QD=2.24;ReadPosRankSum=1.965;SOR=0.994;VarDP=46 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:61:99:61:.:.:0,406 0|1:36,10:46:99:.:0|1:1825558_T_C:103,0,1258:1825558:22,14,7,3 +chrX 1825578 . T C 75 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=2.02;BaseQRankSum=-4.366;DP=115;ExcessHet=0.0000;FS=4.983;MQ=59.20;MQRankSum=1.295;QD=2.02;ReadPosRankSum=1.128;SOR=0.223;VarDP=52 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:61:99:61:.:.:0,406 0|1:40,12:52:99:.:0|1:1825558_T_C:105,0,1399:1825558:27,13,6,6 +chrX 1825788 . T C 52 . AC=1;AF=0.333;AN=3;AS_AltDP=9;AS_QD=1.91;BaseQRankSum=-1.74;DP=107;ExcessHet=0.0000;FS=0.000;MQ=59.29;MQRankSum=0.946;QD=1.91;ReadPosRankSum=2.255;SOR=0.892;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,406 0/1:34,9:43:82:.:82,0,840:17,17,4,5 +chrX 1833437 . C T 233 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=5.84;BaseQRankSum=1.307;DP=89;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=5.84;ReadPosRankSum=0.713;SOR=0.559;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 1:19,26:45:99:.:263,0:8,11,12,14 0/0:.:46:29:44:0,29,893 +chrX 1834391 . A G 588 . AC=2;AF=0.667;AN=3;AS_AltDP=43;AS_QD=7.45;BaseQRankSum=-1.307;DP=89;ExcessHet=0.0000;FS=7.346;MQ=60.00;MQRankSum=0;QD=7.45;ReadPosRankSum=1.626;SOR=0.338;VarDP=83 GT:AD:DP:GQ:PL:SB 1:18,23:41:99:124,0:13,5,10,13 0/1:22,20:42:99:494,0,607:13,9,11,9 +chrX 1836007 . ATTC A 95.97 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=2.87;BaseQRankSum=-1.257;DP=78;ExcessHet=0.0000;FS=1.119;MQ=60.00;MQRankSum=0;QD=2.87;ReadPosRankSum=-1.546;SOR=0.922;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 1:22,25:47:99:.:135,0:12,10,15,10 0/0:.:29:27:25:0,27,630 +chrX 1836024 . A C 90 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=2.18;BaseQRankSum=0.294;DP=85;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=2.18;ReadPosRankSum=-1.181;SOR=0.732;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 1:26,29:55:99:.:120,0:15,11,17,12 0/0:.:29:27:25:0,27,630 +chrX 1836558 . C T 115 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=2.96;BaseQRankSum=2.142;DP=76;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=2.96;ReadPosRankSum=-1.033;SOR=0.541;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 1:23,26:49:99:.:145,0:7,16,9,17 0/0:.:29:27:25:0,27,630 +chrX 1839423 . C T 208 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=4.10;BaseQRankSum=-0.216;DP=101;ExcessHet=0.0000;FS=3.796;MQ=59.80;MQRankSum=-1.514;QD=4.10;ReadPosRankSum=-0.11;SOR=0.302;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 1:25,33:58:99:.:238,0:17,8,18,15 0/0:.:61:21:40:0,21,947 +chrX 1839460 . T C 135 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=3.11;BaseQRankSum=-0.122;DP=94;ExcessHet=0.0000;FS=7.933;MQ=59.81;MQRankSum=-1.272;QD=3.11;ReadPosRankSum=-0.241;SOR=0.289;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 1:24,29:53:99:.:165,0:17,7,14,15 0/0:.:61:21:40:0,21,947 +chrX 1840685 . A ATGAT 111.97 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=2.48;BaseQRankSum=0.413;DP=108;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=2.48;ReadPosRankSum=0.614;SOR=0.608;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 1:29,32:61:99:.:151,0:17,12,18,14 0/0:.:61:21:40:0,21,947 +chrX 1840865 . CTTTT C 426.97 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=11.65;BaseQRankSum=1.887;DP=98;ExcessHet=0.0000;FS=12.548;MQ=59.88;MQRankSum=0.444;QD=11.65;ReadPosRankSum=-1.216;SOR=0.227;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 1:15,25:40:99:.:466,0:3,12,13,12 0/0:.:61:21:40:0,21,947 +chrX 1842441 . G A 30 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=1.22;BaseQRankSum=-0.924;DP=101;ExcessHet=0.0000;FS=4.041;MQ=59.54;MQRankSum=0;QD=1.22;ReadPosRankSum=1.954;SOR=1.325;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 1:23,26:49:60:.:60,0:12,11,17,9 0/0:.:58:24:49:0,24,1096 +chrX 1844855 . A T 1594 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=27.07;DP=141;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=27.07;SOR=1.316;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,324 1/1:0,60:60:99:.:1624,179,0:0,0,22,37 +chrX 1845181 . T C 119 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=2.26;BaseQRankSum=2.102;DP=122;ExcessHet=0.0000;FS=1.998;MQ=59.71;MQRankSum=0;QD=2.26;ReadPosRankSum=0.661;SOR=0.484;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 1:32,34:66:99:.:149,0:14,18,17,17 0/0:.:53:61:53:0,61,1155 +chrX 1845287 . A T 657 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=13.21;BaseQRankSum=-1.508;DP=109;ExcessHet=0.0000;FS=2.371;MQ=60.00;MQRankSum=0;QD=13.21;ReadPosRankSum=-1.721;SOR=0.639;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:70:64:57:0,64 0/1:26,26:52:99:.:687,0,728:15,11,12,14 +chrX 1845708 . C CTTTT,CT 464.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=30,2;AS_QD=11.29,18.08;BaseQRankSum=1.62;DP=114;ExcessHet=0.0000;FS=61.195;MQ=57.46;MQRankSum=0;QD=11.72;ReadPosRankSum=0.88;SOR=3.081;VarDP=43 GT:AD:DP:GQ:PL:SB 1:10,20,0:30:73:73,0,481:0,10,19,1 1/2:1,10,2:13:41:431,41,46,231,0,196:0,1,8,4 +chrX 1845813 . G A 56 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=2.39;BaseQRankSum=2.117;DP=58;ExcessHet=0.0000;FS=1.320;MQ=59.40;MQRankSum=-2.059;QD=2.39;ReadPosRankSum=0.475;SOR=0.368;VarDP=36 GT:AD:DP:GQ:MIN_DP:PL:SB 1:18,18:36:86:.:86,0:7,11,9,9 0/0:.:54:25:20:0,25,616 +chrX 1849154 . A G 151 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=2.74;BaseQRankSum=-1.762;DP=88;ExcessHet=0.0000;FS=3.584;MQ=60.00;MQRankSum=0;QD=2.74;ReadPosRankSum=-0.472;SOR=0.357;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 1:29,37:66:99:.:181,0:8,21,14,23 0/0:.:54:25:20:0,25,616 +chrX 1853839 . AAAGGAAGG A 498.97 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=12.23;BaseQRankSum=0.445;DP=111;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=12.23;ReadPosRankSum=-0.28;SOR=0.892;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 1:16,28:44:99:.:538,0:9,7,17,11 0/0:.:58:45:58:0,45,919 +chrX 1854543 . AT A,ATT 528.97 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=2,35;AS_QD=0.00,12.35;BaseQRankSum=1.688;DP=120;ExcessHet=0.0000;FS=1.330;MQ=60.00;MQRankSum=0;QD=11.83;ReadPosRankSum=0.589;SOR=0.740;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 2:11,2,35:48:99:.:568,1199,0:6,5,17,20 0/0:.:58:45:58:0,45,919,45,919,919 +chrX 1854642 . C T 253 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=5.78;BaseQRankSum=-0.619;DP=112;ExcessHet=0.0000;FS=25.561;MQ=59.89;MQRankSum=0.326;QD=5.78;ReadPosRankSum=0.855;SOR=2.492;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 1:20,29:49:99:.:283,0:13,7,6,23 0/0:.:58:45:58:0,45,919 +chrX 1856483 . CT C 137.97 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=4.12;BaseQRankSum=1.457;DP=57;ExcessHet=0.0000;FS=3.061;MQ=60.00;MQRankSum=0;QD=4.12;ReadPosRankSum=0.172;SOR=1.247;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:35:1:0,35 0/1:32,11:43:99:.:177,0,724:13,19,3,8 +chrX 1857181 . G C 806 . AC=2;AF=0.667;AN=3;AS_AltDP=65;AS_QD=6.38;BaseQRankSum=0.258;DP=135;ExcessHet=0.0000;FS=3.141;MQ=59.87;MQRankSum=0.119;QD=6.38;ReadPosRankSum=0.75;SOR=0.462;VarDP=131 GT:AD:DP:GQ:PL:SB 1:34,38:72:99:104,0:22,12,21,17 0/1:32,27:59:99:732,0,864:16,16,12,15 +chrX 1858801 . C T 1026 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=15.53;BaseQRankSum=1.736;DP=135;ExcessHet=0.0000;FS=2.039;MQ=60.00;MQRankSum=0;QD=15.53;ReadPosRankSum=0.327;SOR=1.012;VarDP=68 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:99:66:0,849 0/1:30,38:68:99:.:1056,0,723:14,16,15,23 +chrX 1859052 . C CA 1321.97 . AC=2;AF=0.667;AN=3;AS_AltDP=69;AS_QD=16.40;BaseQRankSum=-0.326;DP=117;ExcessHet=0.0000;FS=6.127;MQ=59.86;MQRankSum=0;QD=16.40;ReadPosRankSum=-1.369;SOR=0.219;VarDP=83 GT:AD:DP:GQ:PL:SB 1:1,51:52:99:1084,0:1,0,27,24 0/1:13,18:31:99:277,0,207:9,4,9,9 +chrX 1859952 . C T 792 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=17.49;BaseQRankSum=-0.942;DP=121;ExcessHet=0.0000;FS=0.000;MQ=59.21;MQRankSum=0.411;QD=17.49;ReadPosRankSum=0.343;SOR=0.593;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:71:99:71:0,1757 0/1:17,30:47:99:.:822,0,429:8,9,15,15 +chrX 1860376 . C T 3710 . AC=3;AF=1.00;AN=3;AS_AltDP=116;AS_QD=32.24;DP=122;ExcessHet=0.0000;FS=0.000;MQ=59.79;QD=32.24;SOR=0.877;VarDP=116 GT:AD:DP:GQ:PL:SB 1:0,70:70:99:2261,0:0,0,39,31 1/1:0,46:46:99:1479,138,0:0,0,24,22 +chrX 1860412 . A G 3776 . AC=3;AF=1.00;AN=3;AS_AltDP=120;AS_QD=31.72;DP=126;ExcessHet=0.0000;FS=0.000;MQ=59.79;QD=31.72;SOR=1.034;VarDP=120 GT:AD:DP:GQ:PL:SB 1:0,70:70:99:2221,0:0,0,40,30 1/1:0,50:50:99:1585,149,0:0,0,29,21 +chrX 1860552 . T C 5509 . AC=3;AF=1.00;AN=3;AS_AltDP=127;AS_QD=32.94;BaseQRankSum=2.618;DP=131;ExcessHet=0.0000;FS=0.000;MQ=59.96;MQRankSum=-0.086;QD=42.94;ReadPosRankSum=0.519;SOR=0.879;VarDP=129 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:2,67:69:99:.:.:2862,0:.:1,1,32,35 1|1:0,60:60:99:0|1:1860552_T_C:2677,181,0:1860552:0,0,26,34 +chrX 1860558 . A G 5519 . AC=3;AF=1.00;AN=3;AS_AltDP=127;AS_QD=28.53;BaseQRankSum=1.986;DP=132;ExcessHet=0.0000;FS=0.000;MQ=59.96;MQRankSum=-0.086;QD=43.02;ReadPosRankSum=0.34;SOR=0.916;VarDP=129 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:2,68:70:99:.:.:2906,0:.:1,1,32,36 1|1:0,59:59:99:0|1:1860552_T_C:2643,178,0:1860552:0,0,25,34 +chrX 1860606 . T C 6191 . AC=3;AF=1.00;AN=3;AS_AltDP=143;AS_QD=35.89;BaseQRankSum=-0.609;DP=146;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=43.20;ReadPosRankSum=-1.557;SOR=0.370;VarDP=144 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,78:79:99:.:.:3353,0:.:0,1,37,41 1|1:0,65:65:99:0|1:1860606_T_C:2868,196,0:1860606:0,0,24,41 +chrX 1860608 . C T 6226 . AC=3;AF=1.00;AN=3;AS_AltDP=144;AS_QD=31.98;BaseQRankSum=-0.506;DP=146;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=43.14;ReadPosRankSum=-1.525;SOR=0.360;VarDP=145 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,78:79:99:.:.:3353,0:.:0,1,37,41 1|1:0,66:66:99:0|1:1860606_T_C:2903,199,0:1860606:0,0,25,41 +chrX 1860628 . T C 5655 . AC=3;AF=1.00;AN=3;AS_AltDP=131;AS_QD=34.58;BaseQRankSum=-0.599;DP=137;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=43.07;ReadPosRankSum=-0.149;SOR=0.474;VarDP=132 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,71:72:99:.:.:3047,0:.:0,1,33,38 1|1:0,60:60:99:0|1:1860606_T_C:2638,181,0:1860606:0,0,18,42 +chrX 1860876 . G A 3388 . AC=3;AF=1.00;AN=3;AS_AltDP=106;AS_QD=31.94;BaseQRankSum=2.205;DP=116;ExcessHet=0.0000;FS=3.573;MQ=60.00;MQRankSum=0;QD=31.94;ReadPosRankSum=1.155;SOR=0.660;VarDP=107 GT:AD:DP:GQ:PL:SB 1:0,65:65:99:2118,0:0,0,36,29 1/1:1,41:42:99:1300,116,0:0,1,24,17 +chrX 1860902 . C T 3955 . AC=3;AF=1.00;AN=3;AS_AltDP=120;AS_QD=33.21;DP=126;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.21;SOR=0.871;VarDP=120 GT:AD:DP:GQ:PL:SB 1:0,72:72:99:2402,0:0,0,37,35 1/1:0,48:48:99:1583,144,0:0,0,28,20 +chrX 1861944 . C T 519 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=9.98;BaseQRankSum=0.498;DP=117;ExcessHet=0.0000;FS=12.331;MQ=59.88;MQRankSum=-1.188;QD=9.98;ReadPosRankSum=-0.481;SOR=1.140;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,744 0/1:33,22:55:99:.:549,0,861:21,12,8,14 +chrX 1862472 . C G 433 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=8.57;BaseQRankSum=0.05;DP=123;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=8.57;ReadPosRankSum=-1.232;SOR=0.826;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,744 0/1:35,19:54:99:.:463,0,1015:19,16,11,8 +chrX 1862650 . AAAGGAAGGAAGGAAGG A 233.97 . AC=1;AF=0.333;AN=3;AS_AltDP=9;AS_QD=22.75;BaseQRankSum=-0.319;DP=72;ExcessHet=0.0000;FS=0.000;MQ=59.93;MQRankSum=0;QD=22.75;ReadPosRankSum=0.618;SOR=0.818;VarDP=12 GT:AD:DP:GQ:MIN_DP:PL:SB 1:3,9:12:99:.:273,0:3,0,8,1 0/0:.:45:41:45:0,41,849 +chrX 1862672 . AGGAAGGAAGGAAGGAAGGAAGGAAGGAG A 481.97 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=20.04;BaseQRankSum=-1.852;DP=49;ExcessHet=0.0000;FS=0.000;MQ=58.74;MQRankSum=-1.28;QD=20.04;ReadPosRankSum=2.19;SOR=0.914;VarDP=26 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:19:99:19:0,397 0/1:12,14:26:99:.:521,0,428:8,4,10,4 +chrX 1862761 . AAAGG A 251.97 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=7.66;BaseQRankSum=0.966;DP=95;ExcessHet=0.0000;FS=0.000;MQ=59.78;MQRankSum=-0.8;QD=7.66;ReadPosRankSum=0.774;SOR=0.693;VarDP=38 GT:AD:DP:GQ:MIN_DP:PL:SB 1:16,22:38:99:.:291,0:8,8,11,11 0/0:.:56:29:53:0,29,960 +chrX 1863041 . GAGAAAGAA G,GAGAAAGAAAGAAAGAAAGAAAGAAAGAAGAAAGAA 790.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=9,15;AS_QD=33.76,32.33;DP=83;ExcessHet=0.0000;FS=0.000;MQ=58.55;QD=34.58;SOR=4.091;VarDP=24 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:50:40:0,50,50 1/2:0,9,15:24:99:.:830,499,520,345,0,566:0,0,22,2 +chrX 1863496 . T G 31 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=1.05;BaseQRankSum=-0.162;DP=113;ExcessHet=0.0000;FS=0.982;MQ=60.00;MQRankSum=0;QD=1.05;ReadPosRankSum=1.759;SOR=0.560;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 1:28,30:58:61:.:61,0:12,16,14,16 0/0:.:52:38:52:0,38,1233 +chrX 1864013 . C T 504 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=11.13;BaseQRankSum=-2.122;DP=116;ExcessHet=0.0000;FS=2.557;MQ=60.00;MQRankSum=0;QD=11.13;ReadPosRankSum=2.173;SOR=1.179;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:99:66:0,1703 0/1:26,22:48:99:.:534,0,740:15,11,15,7 +chrX 1865162 . G A 4201 . AC=3;AF=1.00;AN=3;AS_AltDP=127;AS_QD=33.05;BaseQRankSum=3.811;DP=134;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=33.05;ReadPosRankSum=1.052;SOR=0.256;VarDP=128 GT:AD:DP:GQ:PL:SB 1:0,72:72:99:2376,0:0,0,35,37 1/1:1,55:56:99:1855,158,0:0,1,26,29 +chrX 1865569 . C G 44 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=1.16;BaseQRankSum=-1.439;DP=125;ExcessHet=0.0000;FS=2.073;MQ=60.00;MQRankSum=0;QD=1.16;ReadPosRankSum=0.518;SOR=0.460;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 1:30,34:64:74:.:74,0:12,18,16,18 0/0:.:61:89:61:0,89,1211 +chrX 1866302 . C T 606 . AC=2;AF=0.667;AN=3;AS_AltDP=41;AS_QD=7.66;BaseQRankSum=1.313;DP=84;ExcessHet=0.0000;FS=4.451;MQ=59.87;MQRankSum=0;QD=7.66;ReadPosRankSum=1.011;SOR=1.268;VarDP=83 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:19,21:40:80:.:.:80,0:.:11,8,14,7 0|1:23,20:43:99:0|1:1866302_C_T:556,0,828:1866302:14,9,15,5 +chrX 1866325 . A G 467 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=13.81;BaseQRankSum=-0.299;DP=97;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.81;ReadPosRankSum=-1.189;SOR=0.641;VarDP=36 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:59:99:59:.:.:0,1170 0|1:17,19:36:99:.:1|0:1866302_C_T:497,0,626:1866302:11,6,12,7 +chrX 1866345 . CA C,CAA 60.97 . AC=1,0;AF=0.333,0.00;AN=3;AS_AltDP=10,5;AS_QD=4.35,0.50;BaseQRankSum=0.764;DP=114;ExcessHet=0.0000;FS=0.000;MQ=59.39;MQRankSum=-0.859;QD=3.57;ReadPosRankSum=2.414;SOR=0.678;VarDP=28 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,1170,1170 0/1:13,10,5:28:91:.:100,0,391,91,141,368:7,6,8,7 +chrX 1866495 . CT C,CTT 1428.97 . AC=3,0;AF=1.00,0.00;AN=3;AS_AltDP=69,19;AS_QD=19.84,6.71;BaseQRankSum=0.295;DP=129;ExcessHet=0.0000;FS=1.893;MQ=60.00;MQRankSum=0;QD=15.78;ReadPosRankSum=0.22;SOR=0.333;VarDP=93 GT:AD:DP:GQ:PL:SB 1:3,21,19:43:99:280,0,119:2,1,27,13 1/1:2,48,0:50:99:1188,104,0,1194,144,1235:2,0,27,21 +chrX 1866630 . C T 1003 . AC=1;AF=0.333;AN=3;AS_AltDP=39;AS_QD=12.75;BaseQRankSum=0.939;DP=150;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=12.75;ReadPosRankSum=1.248;SOR=0.750;VarDP=81 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:99:68:0,103 0/1:42,39:81:99:.:1033,0,1067:20,22,18,21 +chrX 1866661 . C T 1041 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=14.47;BaseQRankSum=1.405;DP=147;ExcessHet=0.0000;FS=3.142;MQ=60.00;MQRankSum=0;QD=14.47;ReadPosRankSum=0.406;SOR=0.971;VarDP=74 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:99:68:0,103 0/1:36,38:74:99:.:1071,0,989:17,19,22,16 +chrX 1866977 . T C 719 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=10.70;BaseQRankSum=1.021;DP=140;ExcessHet=0.0000;FS=0.000;MQ=59.62;MQRankSum=-0.207;QD=10.70;ReadPosRankSum=0.28;SOR=0.749;VarDP=70 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:99:68:0,103 0/1:41,29:70:99:.:749,0,1070:19,22,13,16 +chrX 1867791 . G A 1402 . AC=2;AF=0.667;AN=3;AS_AltDP=78;AS_QD=10.69;BaseQRankSum=0.218;DP=140;ExcessHet=0.0000;FS=0.000;MQ=59.97;MQRankSum=0;QD=10.69;ReadPosRankSum=0.42;SOR=0.693;VarDP=134 GT:AD:DP:GQ:PL:SB 1:26,50:76:99:683,0:15,11,23,27 0/1:30,28:58:99:749,0,808:13,17,16,12 +chrX 1867903 . GA G 889.97 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=8.08;BaseQRankSum=1.787;DP=132;ExcessHet=0.0000;FS=0.703;MQ=59.87;MQRankSum=0;QD=8.08;ReadPosRankSum=0.918;SOR=0.835;VarDP=115 GT:AD:DP:GQ:PL:SB 1:26,34:60:99:254,0:12,14,17,17 0/1:27,28:55:99:675,0,640:12,15,9,19 +chrX 1868811 . A G 763 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=15.86;BaseQRankSum=-2.284;DP=124;ExcessHet=0.0000;FS=13.682;MQ=60.00;MQRankSum=0;QD=15.86;ReadPosRankSum=1.209;SOR=1.379;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:72:15:72:0,15 0/1:20,30:50:99:.:793,0,546:13,7,10,20 +chrX 1869551 . CA *,C,AA 253 . AC=0,1,0;AF=0.00,0.333,0.00;AN=3;AS_AltDP=4,13,4;AS_QD=0.00,13.48,0.92;BaseQRankSum=-0.928;DP=117;ExcessHet=0.0000;FS=13.532;MQ=60.00;MQRankSum=0;QD=9.76;ReadPosRankSum=0.488;SOR=0.561;VarDP=29 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,844,844,844 0/2:8,4,13,4:29:99:.:283,244,889,0,124,217,272,844,99,1008:7,1,9,12 +chrX 1869884 . C A 1213 . AC=2;AF=0.667;AN=3;AS_AltDP=75;AS_QD=9.14;BaseQRankSum=0.044;DP=141;ExcessHet=0.0000;FS=0.639;MQ=60.00;MQRankSum=0;QD=9.14;ReadPosRankSum=1.005;SOR=0.796;VarDP=136 GT:AD:DP:GQ:PL:SB 1:30,39:69:99:279,0:12,18,20,19 0/1:31,36:67:99:964,0,833:19,12,20,16 +chrX 1870093 . G A 925 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=8.30;BaseQRankSum=1.71;DP=118;ExcessHet=0.0000;FS=5.766;MQ=60.00;MQRankSum=0;QD=8.30;ReadPosRankSum=0.294;SOR=0.869;VarDP=115 GT:AD:DP:GQ:PL:SB 1:27,34:61:99:274,0:15,12,21,13 0/1:28,26:54:99:681,0,780:10,18,13,13 +chrX 1871076 . CT C 244.97 . AC=2;AF=0.667;AN=3;AS_AltDP=37;AS_QD=3.38;BaseQRankSum=-0.061;DP=115;ExcessHet=0.0000;FS=5.641;MQ=59.82;MQRankSum=0;QD=3.38;ReadPosRankSum=-0.763;SOR=1.247;VarDP=84 GT:AD:DP:GQ:PL:SB 1:21,24:45:95:95,0:10,11,8,16 0/1:26,13:39:99:189,0,448:14,12,6,7 +chrX 1871511 . G A 2462 . AC=3;AF=1.00;AN=3;AS_AltDP=110;AS_QD=17.43;BaseQRankSum=1.142;DP=147;ExcessHet=0.0000;FS=7.830;MQ=60.00;MQRankSum=0;QD=17.43;ReadPosRankSum=1.43;SOR=0.629;VarDP=143 GT:AD:DP:GQ:PL:SB 1:33,38:71:99:202,0:20,13,16,22 1/1:0,72:72:99:2290,216,0:0,0,34,38 +chrX 1871708 . A C 2326 . AC=2;AF=0.667;AN=3;AS_AltDP=74;AS_QD=31.84;DP=140;ExcessHet=0.0000;FS=0.000;MQ=59.83;QD=31.84;SOR=0.992;VarDP=74 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:53:64:0,53 1/1:0,74:74:99:.:2356,221,0:0,0,42,32 +chrX 1872174 . A T 1820 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=32.46;DP=123;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.46;SOR=0.800;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:53:64:0,53 1/1:0,57:57:99:.:1850,171,0:0,0,27,30 +chrX 1872244 . AT A 1025.97 . AC=2;AF=0.667;AN=3;AS_AltDP=42;AS_QD=24.77;DP=117;ExcessHet=0.0000;FS=0.000;MQ=59.39;MQRankSum=6.635;QD=24.77;SOR=0.569;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:53:64:0,53 1/1:1,42:43:99:.:1065,105,0:0,1,15,27 +chrX 1873152 . G A 1603 . AC=3;AF=1.00;AN=3;AS_AltDP=81;AS_QD=14.08;BaseQRankSum=2.804;DP=122;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.08;ReadPosRankSum=1.441;SOR=0.664;VarDP=116 GT:AD:DP:GQ:PL:SB 1:34,35:69:99:105,0:18,16,18,17 1/1:1,46:47:99:1528,131,0:0,1,23,23 +chrX 1873476 . A G 537 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=6.03;BaseQRankSum=0.611;DP=98;ExcessHet=0.0000;FS=5.196;MQ=59.84;MQRankSum=0.172;QD=6.03;ReadPosRankSum=-0.035;SOR=0.727;VarDP=94 GT:AD:DP:GQ:PL:SB 1:23,27:50:54:54,0:10,13,13,14 0/1:24,20:44:99:513,0,622:10,14,13,7 +chrX 1873711 . TCTCTCCTTTCTCAGTCTCCTTTCTCTCTCTCTTTCC T 281.97 . AC=1;AF=0.333;AN=3;AS_AltDP=7;AS_QD=24.74;DP=72;ExcessHet=0.0000;FS=0.000;MQ=59.21;QD=45.86;SOR=1.609;VarDP=7 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,7:7:99:.:321,0:0,0,2,5 0/0:.:35:26:31:0,26,857 +chrX 1874675 . CTTTTT C,CTTTT,CT 669.97 . AC=1,1,1;AF=0.333,0.333,0.333;AN=3;AS_AltDP=19,5,12;AS_QD=19.92,1.45,33.78;BaseQRankSum=-0.743;DP=123;ExcessHet=0.0000;FS=14.939;MQ=58.10;MQRankSum=0;QD=16.88;ReadPosRankSum=0.248;SOR=2.669;VarDP=42 GT:AD:DP:GQ:PL:SB 2:4,11,5,0:20:16:16,451,0,495:3,1,3,13 1/3:2,8,0,12:22:85:693,195,359,563,332,634,100,0,166,85:1,1,4,16 +chrX 1875454 . T C 1974 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=31.81;DP=119;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.81;SOR=1.573;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:57:35:55:0,35 1/1:0,63:63:99:.:2004,189,0:0,0,42,21 +chrX 1875577 . A G 1539 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=30.76;DP=107;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.76;SOR=0.813;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:57:35:55:0,35 1/1:0,51:51:99:.:1569,152,0:0,0,27,24 +chrX 1876770 . T C 3468 . AC=3;AF=1.00;AN=3;AS_AltDP=108;AS_QD=32.39;DP=117;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.39;SOR=0.936;VarDP=108 GT:AD:DP:GQ:PL:SB 1:0,51:51:99:1686,0:0,0,24,27 1/1:0,57:57:99:1812,171,0:0,0,24,33 +chrX 1877361 . C A 495 . AC=1;AF=0.333;AN=3;AS_AltDP=47;AS_QD=6.73;BaseQRankSum=-0.453;DP=134;ExcessHet=0.0000;FS=3.113;MQ=59.69;MQRankSum=0;QD=6.73;ReadPosRankSum=-0.23;SOR=0.789;VarDP=78 GT:AD:DP:GQ:MIN_DP:PL:SB 1:31,47:78:99:.:525,0:14,17,26,21 0/0:.:54:73:54:0,73,1451 +chrX 1877384 . C CT 831.97 . AC=2;AF=0.667;AN=3;AS_AltDP=36;AS_QD=22.33;BaseQRankSum=-0.866;DP=125;ExcessHet=0.0000;FS=0.000;MQ=59.54;MQRankSum=0;QD=22.33;ReadPosRankSum=0.976;SOR=0.437;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:70:99:70:0,1760 1/1:3,36:39:37:.:871,37,0:2,1,19,17 +chrX 1877615 . T C 679 . AC=1;AF=0.333;AN=3;AS_AltDP=42;AS_QD=10.28;BaseQRankSum=1.372;DP=136;ExcessHet=0.0000;FS=0.000;MQ=59.83;MQRankSum=-0.772;QD=10.28;ReadPosRankSum=-0.143;SOR=0.762;VarDP=69 GT:AD:DP:GQ:MIN_DP:PL:SB 1:27,42:69:99:.:709,0:12,15,18,24 0/0:.:66:86:66:0,86,1366 +chrX 1877622 . G A 621 . AC=1;AF=0.333;AN=3;AS_AltDP=41;AS_QD=9.43;BaseQRankSum=2.594;DP=137;ExcessHet=0.0000;FS=0.000;MQ=59.84;MQRankSum=-0.797;QD=9.43;ReadPosRankSum=1.321;SOR=0.755;VarDP=69 GT:AD:DP:GQ:MIN_DP:PL:SB 1:28,41:69:99:.:651,0:12,16,17,24 0/0:.:66:86:66:0,86,1366 +chrX 1877739 . T C 1964 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=32.69;DP=111;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.69;SOR=0.725;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:51:40:50:0,40 1/1:0,61:61:99:.:1994,183,0:0,0,30,31 +chrX 1877966 . T C 393 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=6.93;BaseQRankSum=2.035;DP=124;ExcessHet=0.0000;FS=2.182;MQ=60.00;MQRankSum=0;QD=6.93;ReadPosRankSum=-1.694;SOR=0.628;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 1:25,36:61:99:.:423,0:14,11,17,19 0/0:.:61:56:61:0,56,1350 +chrX 1878083 . CA C,CAA 969.97 . AC=1,2;AF=0.333,0.667;AN=3;AS_AltDP=19,50;AS_QD=14.74,17.46;DP=98;ExcessHet=0.0000;FS=0.000;MQ=59.84;QD=14.62;SOR=1.131;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,19,16:35:99:280,0,136:0,0,21,14 2/2:0,0,34:34:99:729,729,729,100,100,0:0,0,20,14 +chrX 1878307 . T A 704 . AC=1;AF=0.333;AN=3;AS_AltDP=40;AS_QD=12.88;BaseQRankSum=-0.95;DP=111;ExcessHet=0.0000;FS=1.121;MQ=60.00;MQRankSum=0;QD=12.88;ReadPosRankSum=0.122;SOR=0.822;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 1:17,40:57:99:.:734,0:9,8,18,22 0/0:.:53:76:53:0,76,1210 +chrX 1878547 . C T 2254 . AC=2;AF=0.667;AN=3;AS_AltDP=68;AS_QD=33.59;DP=139;ExcessHet=0.0000;FS=0.000;MQ=59.87;QD=33.59;SOR=1.098;VarDP=68 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:41:67:0,41 1/1:0,68:68:99:.:2284,204,0:0,0,40,28 +chrX 1878671 . C T 5491 . AC=3;AF=1.00;AN=3;AS_AltDP=157;AS_QD=29.75;DP=160;ExcessHet=0.0000;FS=0.000;MQ=59.72;QD=35.17;SOR=0.994;VarDP=157 GT:AD:DP:GQ:PL:SB 1:0,76:76:99:2925,0:0,0,46,30 1/1:0,81:81:99:2596,243,0:0,0,43,38 +chrX 1878691 . A G 351 . AC=1;AF=0.333;AN=3;AS_AltDP=45;AS_QD=5.08;BaseQRankSum=-1.508;DP=107;ExcessHet=0.0000;FS=3.183;MQ=59.60;MQRankSum=-0.625;QD=5.08;ReadPosRankSum=-0.59;SOR=1.106;VarDP=75 GT:AD:DP:GQ:MIN_DP:PL:SB 1:30,45:75:99:.:381,0:16,14,28,17 0/0:.:44:24:31:0,24,939 +chrX 1878915 . CA C,CAA 71.97 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=4,9;AS_QD=0.00,12.33;DP=89;ExcessHet=0.0000;FS=0.000;MQ=57.90;QD=8.54;SOR=0.836;VarDP=13 GT:AD:DP:GQ:MIN_DP:PL:SB 2:0,4,9:13:99:.:111,300,0:0,0,7,6 0/0:.:43:0:43:0,0,233,0,233,233 +chrX 1879605 . T C 4172 . AC=3;AF=1.00;AN=3;AS_AltDP=131;AS_QD=32.08;DP=134;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.08;SOR=0.739;VarDP=131 GT:AD:DP:GQ:PL:SB 1:0,74:74:99:2386,0:0,0,39,35 1/1:0,57:57:99:1816,171,0:0,0,28,29 +chrX 1880173 . CATAATA C 5270.97 . AC=3;AF=1.00;AN=3;AS_AltDP=119;AS_QD=24.58;DP=134;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.62;SOR=0.779;VarDP=119 GT:AD:DP:GQ:PL:SB 1:0,60:60:99:2661,0:0,0,33,27 1/1:0,59:59:99:2649,178,0:0,0,29,30 +chrX 1880217 . C CA 4755.97 . AC=3;AF=1.00;AN=3;AS_AltDP=130;AS_QD=26.04;DP=133;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=36.88;SOR=0.892;VarDP=130 GT:AD:DP:GQ:PL:SB 1:0,63:63:99:2344,0:0,0,36,27 1/1:0,67:67:99:2451,201,0:0,0,35,32 +chrX 1880582 . C T 2268 . AC=2;AF=0.667;AN=3;AS_AltDP=71;AS_QD=31.92;BaseQRankSum=2.482;DP=129;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=31.92;ReadPosRankSum=-0.12;SOR=0.378;VarDP=72 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:55:99:55:0,317 1/1:1,71:72:99:.:2298,206,0:1,0,41,30 +chrX 1880728 . T C 1973 . AC=2;AF=0.667;AN=3;AS_AltDP=66;AS_QD=21.54;BaseQRankSum=0.094;DP=95;ExcessHet=0.0000;FS=1.870;MQ=59.90;MQRankSum=0;QD=21.54;ReadPosRankSum=0.754;SOR=0.831;VarDP=93 GT:AD:DP:GQ:PL:SB 1:1,45:46:99:1454,0:0,1,20,25 0/1:26,21:47:99:549,0,698:14,12,10,11 +chrX 1880891 . GGAAA G 602.97 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=15.66;BaseQRankSum=0.675;DP=89;ExcessHet=0.0000;FS=0.000;MQ=59.77;MQRankSum=0;QD=15.66;ReadPosRankSum=1.82;SOR=0.601;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:42:99:42:0,138 0/1:24,17:41:99:.:642,0,922:16,8,11,6 +chrX 1880909 . CAAGA C 599.97 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=15.21;BaseQRankSum=1.138;DP=90;ExcessHet=0.0000;FS=0.000;MQ=59.77;MQRankSum=0;QD=15.21;ReadPosRankSum=1.033;SOR=0.702;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:42:99:42:0,138 0/1:25,17:42:99:.:639,0,959:16,9,11,6 +chrX 1880918 . AAG A 916.97 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=10.86;BaseQRankSum=0;DP=93;ExcessHet=0.0000;FS=0.000;MQ=59.88;MQRankSum=0;QD=10.86;ReadPosRankSum=0.211;SOR=0.702;VarDP=88 GT:AD:DP:GQ:PL:SB 1:22,22:44:11:11,0:16,6,15,7 0/1:19,25:44:99:945,0,715:11,8,16,9 +chrX 1880943 . AGGAAGGAG A 3356.97 . AC=3;AF=1.00;AN=3;AS_AltDP=79;AS_QD=31.91;BaseQRankSum=-0.462;DP=98;ExcessHet=0.0000;FS=4.717;MQ=59.89;MQRankSum=0;QD=42.45;ReadPosRankSum=-1.032;SOR=1.447;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,38:38:99:1645,0:0,0,27,11 1/1:1,41:42:82:1751,82,0:0,1,26,15 +chrX 1881209 . G GGAA 3028.97 . AC=2;AF=0.667;AN=3;AS_AltDP=73;AS_QD=32.99;BaseQRankSum=-0.226;DP=96;ExcessHet=0.0000;FS=0.978;MQ=59.66;MQRankSum=-1.157;QD=32.99;ReadPosRankSum=0.824;SOR=0.941;VarDP=93 GT:AD:DP:GQ:PL:SB 1:0,44:44:99:1931,0:0,0,29,15 0/1:20,29:49:99:1137,0,752:11,9,15,14 +chrX 1881423 . ACAGAGCAAG A 99.97 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=9.93;DP=55;ExcessHet=0.0000;FS=0.000;MQ=58.55;QD=9.93;SOR=1.802;VarDP=14 GT:AD:DP:GQ:MIN_DP:PL:SB 1:2,12:14:99:.:139,0:0,0,8,3 0/0:.:30:21:17:0,21,405 +chrX 1881433 . A *,AT 99.97 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=2,11;AS_QD=0.00,12.64;DP=51;ExcessHet=0.0000;FS=0.000;MQ=58.55;QD=10.69;SOR=2.147;VarDP=13 GT:AD:DP:GQ:MIN_DP:PL:SB 2:0,2,11:13:99:.:139,394,0:0,0,10,3 0/0:.:13:0:13:0,0,223,0,223,223 +chrX 1881447 . AGCGAGAGAAGGAAGG A 99.97 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=9.93;DP=49;ExcessHet=0.0000;FS=0.000;MQ=58.55;QD=9.93;SOR=1.802;VarDP=14 GT:AD:DP:GQ:MIN_DP:PL:SB 1:2,12:14:99:.:139,0:0,0,8,3 0/0:.:11:0:11:0,0,292 +chrX 1881468 . GCGAGAGAAGGAAGGAAGGACAGAGCAAGAGAAGGAAGGAAGGAGCGAGAGAAGGAAGGAAGGAGCGAGAGAAGGAAGGAAGGACAGAGCAAGAGAAGGAAGGAAGGAGCGAGAGAAGGAAGGAAGGAATGAAGGAATGAAGGAAGGAA G 108.97 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=4.48;DP=68;ExcessHet=0.0000;FS=0.000;MQ=59.04;QD=4.48;SOR=1.609;VarDP=33 GT:AD:DP:GQ:MIN_DP:PL:SB 1:2,31:33:99:.:148,0:0,0,7,3 0/0:.:11:27:11:0,27,307 +chrX 1881605 . T G 1275 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=27.22;DP=62;ExcessHet=0.0000;FS=0.000;MQ=59.17;QD=45.00;SOR=1.071;VarDP=29 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,29:29:99:.:1305,0:0,0,17,12 0/0:.:33:0:33:0,0,155 +chrX 1881613 . G A 1453 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=25.04;DP=69;ExcessHet=0.0000;FS=0.000;MQ=59.27;QD=44.94;SOR=1.179;VarDP=33 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,33:33:99:.:1483,0:0,0,20,13 0/0:.:36:0:36:0,0,446 +chrX 1881615 . A G 1488 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=37.87;DP=70;ExcessHet=0.0000;FS=0.000;MQ=59.29;QD=44.65;SOR=1.085;VarDP=34 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,34:34:99:.:1518,0:0,0,20,14 0/0:.:36:0:36:0,0,426 +chrX 1881619 . A G 1488 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=30.44;DP=75;ExcessHet=0.0000;FS=0.000;MQ=59.33;QD=44.65;SOR=1.085;VarDP=34 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,34:34:99:.:1518,0:0,0,20,14 0/0:.:39:0:39:0,0,301 +chrX 1881802 . T C 2779 . AC=2;AF=0.667;AN=3;AS_AltDP=91;AS_QD=21.61;BaseQRankSum=0.231;DP=133;ExcessHet=0.0000;FS=6.049;MQ=60.00;MQRankSum=0;QD=21.61;ReadPosRankSum=-0.469;SOR=0.321;VarDP=130 GT:AD:DP:GQ:PL:SB 1:0,65:65:99:2155,0:0,0,31,34 0/1:39,26:65:99:654,0,1045:25,14,16,10 +chrX 1881878 . T C 460 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=4.30;BaseQRankSum=0.545;DP=115;ExcessHet=0.0000;FS=5.950;MQ=60.00;MQRankSum=0;QD=4.30;ReadPosRankSum=0.93;SOR=0.338;VarDP=114 GT:AD:DP:GQ:PL:SB 1:26,35:61:28:28,0:14,12,18,17 0/1:34,19:53:99:462,0,902:25,9,11,8 +chrX 1882339 . C CTTT,CTTTTTTTTTT 1986.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=41,23;AS_QD=31.63,29.76;BaseQRankSum=1.144;DP=115;ExcessHet=0.0000;FS=0.932;MQ=59.78;MQRankSum=0;QD=23.29;ReadPosRankSum=0.053;SOR=0.944;VarDP=87 GT:AD:DP:GQ:PL:SB 2:0,23,23:46:2:1369,2,0:0,0,24,22 0/1:23,18,0:41:99:657,0,875,726,929,1655:12,11,13,5 +chrX 1882365 . C G 1567 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=19.72;BaseQRankSum=-1.931;DP=90;ExcessHet=0.0000;FS=0.000;MQ=59.95;MQRankSum=0;QD=19.72;ReadPosRankSum=-0.128;SOR=0.688;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,39:39:99:1266,0:0,0,17,22 0/1:25,17:42:99:331,0,650:13,12,12,5 +chrX 1882696 . G A 862 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=12.74;BaseQRankSum=0.232;DP=137;ExcessHet=0.0000;FS=4.556;MQ=60.00;MQRankSum=0;QD=12.74;ReadPosRankSum=-1.569;SOR=1.019;VarDP=70 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,110 0/1:36,34:70:99:.:892,0,952:19,17,14,20 +chrX 1882751 . C T 135 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=2.70;BaseQRankSum=3.278;DP=139;ExcessHet=0.0000;FS=5.105;MQ=57.68;MQRankSum=-1.343;QD=2.70;ReadPosRankSum=0.902;SOR=1.146;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 1:30,31:61:99:.:165,0:14,16,19,12 0/0:.:77:99:77:0,120,1800 +chrX 1882836 . C T 4605 . AC=3;AF=1.00;AN=3;AS_AltDP=136;AS_QD=34.08;DP=141;ExcessHet=0.0000;FS=0.000;MQ=52.90;QD=34.08;SOR=0.883;VarDP=136 GT:AD:DP:GQ:PL:SB 1:0,70:70:99:2391,0:0,0,35,35 1/1:0,66:66:99:2244,199,0:0,0,27,39 +chrX 1883084 . T A 417 . AC=1;AF=0.333;AN=3;AS_AltDP=49;AS_QD=5.26;BaseQRankSum=0.344;DP=152;ExcessHet=0.0000;FS=0.833;MQ=60.00;MQRankSum=0;QD=5.26;ReadPosRankSum=-0.022;SOR=0.820;VarDP=85 GT:AD:DP:GQ:MIN_DP:PL:SB 1:36,49:85:99:.:447,0:15,21,19,30 0/0:.:64:94:64:0,94,1333 +chrX 1883197 . C CT 263.97 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=7.97;BaseQRankSum=-2.409;DP=119;ExcessHet=0.0000;FS=0.000;MQ=59.91;MQRankSum=1.625;QD=7.97;ReadPosRankSum=-0.419;SOR=0.579;VarDP=38 GT:AD:DP:GQ:MIN_DP:PL:SB 1:11,27:38:99:.:303,0:4,7,11,16 0/0:.:64:94:64:0,94,1333 +chrX 1883448 . C T 578 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=12.41;BaseQRankSum=3.973;DP=105;ExcessHet=0.0000;FS=2.418;MQ=59.77;MQRankSum=0;QD=12.41;ReadPosRankSum=2.142;SOR=0.404;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:54:99:54:0,148 0/1:27,22:49:99:.:608,0,631:11,16,11,11 +chrX 1884023 . C T 2717 . AC=2;AF=0.667;AN=3;AS_AltDP=92;AS_QD=21.63;BaseQRankSum=1.178;DP=127;ExcessHet=0.0000;FS=7.894;MQ=60.00;MQRankSum=0;QD=21.63;ReadPosRankSum=-0.257;SOR=0.257;VarDP=127 GT:AD:DP:GQ:PL:SB 1:0,62:62:99:1949,0:0,0,31,31 0/1:35,30:65:99:798,0,906:23,12,15,15 +chrX 1884061 . TG T 1040.97 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=9.31;BaseQRankSum=-0.584;DP=120;ExcessHet=0.0000;FS=2.390;MQ=60.00;MQRankSum=0;QD=9.31;ReadPosRankSum=0.392;SOR=0.460;VarDP=116 GT:AD:DP:GQ:PL:SB 1:27,30:57:99:124,0:14,13,16,14 0/1:31,28:59:99:956,0,1051:19,12,13,15 +chrX 1884091 . C G 611 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=13.08;BaseQRankSum=-2.019;DP=121;ExcessHet=0.0000;FS=8.059;MQ=60.00;MQRankSum=0;QD=13.08;ReadPosRankSum=-0.61;SOR=0.919;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:99:68:0,104 0/1:24,25:49:99:.:641,0,666:15,9,10,15 +chrX 1884814 . C T 3219 . AC=2;AF=0.667;AN=3;AS_AltDP=101;AS_QD=24.43;BaseQRankSum=2.526;DP=143;ExcessHet=0.0000;FS=3.788;MQ=60.00;MQRankSum=0;QD=24.43;ReadPosRankSum=0.241;SOR=0.661;VarDP=133 GT:AD:DP:GQ:PL:SB 1:0,70:70:99:2360,0:0,0,38,32 0/1:32,31:63:99:889,0,846:14,18,16,15 +chrX 1885116 . CA C 1929.97 . AC=2;AF=0.667;AN=3;AS_AltDP=86;AS_QD=19.30;BaseQRankSum=-0.647;DP=127;ExcessHet=0.0000;FS=5.562;MQ=60.00;MQRankSum=0;QD=19.30;ReadPosRankSum=0.08;SOR=0.612;VarDP=102 GT:AD:DP:GQ:PL:SB 1:0,62:62:99:1511,0:0,0,35,27 0/1:16,24:40:99:458,0,269:6,10,12,12 +chrX 1885321 . TG T 1162.97 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=19.70;BaseQRankSum=0.541;DP=139;ExcessHet=0.0000;FS=0.988;MQ=60.00;MQRankSum=0;QD=19.70;ReadPosRankSum=0.502;SOR=0.549;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:75:43:75:0,43 0/1:24,37:61:99:.:1202,0,699:10,14,17,20 +chrX 1886208 . C G 208 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=4.03;BaseQRankSum=-1.567;DP=120;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=4.03;ReadPosRankSum=-1.266;SOR=0.587;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 1:25,34:59:99:.:238,0:14,11,18,16 0/0:.:59:99:59:0,103,1449 +chrX 1886240 . G A 118 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=2.47;BaseQRankSum=0.6;DP=121;ExcessHet=0.0000;FS=0.960;MQ=60.00;MQRankSum=0;QD=2.47;ReadPosRankSum=0.052;SOR=0.569;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 1:28,32:60:99:.:148,0:15,13,16,16 0/0:.:59:99:59:0,103,1449 +chrX 1886325 . T G 3056 . AC=2;AF=0.667;AN=3;AS_AltDP=106;AS_QD=22.53;BaseQRankSum=-0.349;DP=141;ExcessHet=0.0000;FS=5.130;MQ=59.85;MQRankSum=0.046;QD=22.53;ReadPosRankSum=0.387;SOR=1.099;VarDP=137 GT:AD:DP:GQ:PL:SB 1:0,75:75:99:2304,0:0,0,32,43 0/1:31,31:62:99:782,0,807:16,15,11,20 +chrX 1886382 . C CA 169.97 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=3.60;BaseQRankSum=-0.807;DP=121;ExcessHet=0.0000;FS=1.062;MQ=59.90;MQRankSum=1.184;QD=3.60;ReadPosRankSum=0.887;SOR=1.007;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 1:25,33:58:99:.:209,0:10,15,11,22 0/0:.:57:99:57:0,112,1462 +chrX 1886446 . G A 523 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=11.29;BaseQRankSum=0.347;DP=110;ExcessHet=0.0000;FS=10.927;MQ=60.00;MQRankSum=0;QD=11.29;ReadPosRankSum=0.819;SOR=2.200;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:99:60:0,278 0/1:28,21:49:99:.:553,0,775:14,14,16,5 +chrX 1886554 . CTTG C 3901.97 . AC=2;AF=0.667;AN=3;AS_AltDP=91;AS_QD=35.32;BaseQRankSum=1.092;DP=120;ExcessHet=0.0000;FS=0.976;MQ=60.00;MQRankSum=0;QD=36.16;ReadPosRankSum=-0.767;SOR=0.530;VarDP=109 GT:AD:DP:GQ:PL:SB 1:0,61:61:99:2735,0:0,0,31,30 0/1:18,30:48:99:1206,0,665:8,10,14,16 +chrX 1886811 . T C 460 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=9.80;BaseQRankSum=1.54;DP=100;ExcessHet=0.0000;FS=1.111;MQ=60.00;MQRankSum=0;QD=9.80;ReadPosRankSum=-0.111;SOR=0.538;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 1:18,32:50:99:.:490,0:7,11,14,18 0/0:.:50:73:50:0,73,1107 +chrX 1886920 . G C 1959 . AC=2;AF=0.667;AN=3;AS_AltDP=64;AS_QD=31.08;DP=128;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.08;SOR=0.822;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,229 1/1:0,64:64:99:.:1989,191,0:0,0,30,34 +chrX 1887050 . C CT 1186.97 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=15.14;BaseQRankSum=-0.145;DP=99;ExcessHet=0.0000;FS=0.929;MQ=59.95;MQRankSum=0;QD=15.14;ReadPosRankSum=0.33;SOR=0.506;VarDP=81 GT:AD:DP:GQ:PL:SB 1:1,41:42:99:958,0:1,0,24,17 0/1:23,16:39:99:268,0,448:13,10,6,10 +chrX 1890827 . C T 733 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=12.72;BaseQRankSum=0.566;DP=61;ExcessHet=0.0000;FS=3.667;MQ=60.00;MQRankSum=0;QD=12.72;ReadPosRankSum=1.356;SOR=1.251;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:1:25:1:0,25 0/1:32,28:60:99:.:763,0,882:18,14,19,9 +chrX 1891510 . TCC T,TC 561.97 . AC=0,2;AF=0.00,0.667;AN=3;AS_AltDP=9,24;AS_QD=0.00,18.78;BaseQRankSum=1.358;DP=73;ExcessHet=0.0000;FS=45.027;MQ=56.93;MQRankSum=2.6;QD=14.66;ReadPosRankSum=1.267;SOR=2.773;VarDP=41 GT:AD:DP:GQ:PL:SB 2:3,9,9:21:99:258,459,0:3,0,6,12 0/2:5,0,15:20:27:343,357,429,0,72,27:5,0,0,15 +chrX 1891542 . T C 1591 . AC=3;AF=1.00;AN=3;AS_AltDP=51;AS_QD=31.78;DP=52;ExcessHet=0.0000;FS=0.000;MQ=59.55;QD=31.78;SOR=3.215;VarDP=51 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:749,0:0,0,3,20 1/1:0,28:28:83:872,83,0:0,0,5,23 +chrX 1891810 . C T 3146 . AC=3;AF=1.00;AN=3;AS_AltDP=94;AS_QD=33.79;DP=95;ExcessHet=0.0000;FS=0.000;MQ=59.39;QD=33.79;SOR=0.736;VarDP=94 GT:AD:DP:GQ:PL:SB 1:0,49:49:99:1643,0:0,0,24,25 1/1:0,45:45:99:1533,135,0:0,0,22,23 +chrX 1891834 . C G 2886 . AC=3;AF=1.00;AN=3;AS_AltDP=92;AS_QD=31.70;DP=97;ExcessHet=0.0000;FS=0.000;MQ=59.10;QD=31.70;SOR=0.782;VarDP=92 GT:AD:DP:GQ:PL:SB 1:0,46:46:99:1428,0:0,0,22,24 1/1:0,46:46:99:1488,137,0:0,0,22,24 +chrX 1891880 . C T 604 . AC=2;AF=0.667;AN=3;AS_AltDP=42;AS_QD=6.74;BaseQRankSum=0.21;DP=100;ExcessHet=0.0000;FS=1.685;MQ=59.20;MQRankSum=0.729;QD=6.74;ReadPosRankSum=0.915;SOR=0.664;VarDP=94 GT:AD:DP:GQ:PL:SB 1:18,26:44:99:258,0:8,10,14,12 0/1:34,16:50:99:376,0,946:20,14,6,10 +chrX 1892589 . AT A 3876.97 . AC=3;AF=1.00;AN=3;AS_AltDP=124;AS_QD=31.58;DP=133;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.58;SOR=1.064;VarDP=124 GT:AD:DP:GQ:PL:SB 1:0,68:68:99:2174,0:0,0,43,25 1/1:0,56:56:99:1742,168,0:0,0,29,27 +chrX 1892854 . C CTT 605.97 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=16.13;BaseQRankSum=0.805;DP=131;ExcessHet=0.0000;FS=9.829;MQ=59.50;MQRankSum=-0.723;QD=16.13;ReadPosRankSum=-0.768;SOR=0.552;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,1413 0/1:15,25:40:99:.:645,0,393:4,11,14,11 +chrX 1893102 . C T 865 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=12.97;BaseQRankSum=1.653;DP=138;ExcessHet=0.0000;FS=0.000;MQ=59.84;MQRankSum=1.385;QD=12.97;ReadPosRankSum=0.547;SOR=0.654;VarDP=69 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,1413 0/1:36,33:69:99:.:895,0,954:20,16,18,15 +chrX 1893195 . ATTTT A,AT 1951.97 . AC=0,3;AF=0.00,1.00;AN=3;AS_AltDP=16,50;AS_QD=29.61,29.21;BaseQRankSum=-1.471;DP=116;ExcessHet=0.0000;FS=19.608;MQ=58.52;MQRankSum=2.647;QD=28.04;ReadPosRankSum=0.907;SOR=0.970;VarDP=71 GT:AD:DP:GQ:PL:SB 2:0,16,17:33:41:1032,41,0:0,0,16,17 2/2:5,0,33:38:24:959,972,1046,24,97,0:5,0,9,24 +chrX 1893236 . G T 641 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=15.98;BaseQRankSum=-1.346;DP=98;ExcessHet=0.0000;FS=1.247;MQ=60.00;MQRankSum=0;QD=15.98;ReadPosRankSum=0.487;SOR=0.426;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:53:99:53:0,239 0/1:17,25:42:99:.:671,0,427:6,11,11,14 +chrX 1893322 . G A 699 . AC=2;AF=0.667;AN=3;AS_AltDP=49;AS_QD=7.15;BaseQRankSum=2.128;DP=112;ExcessHet=0.0000;FS=6.303;MQ=59.51;MQRankSum=0.857;QD=7.15;ReadPosRankSum=1.298;SOR=0.849;VarDP=102 GT:AD:DP:GQ:PL:SB 1:23,29:52:99:184,0:18,5,11,18 0/1:30,20:50:99:545,0,832:12,18,10,10 +chrX 1893429 . G A 625 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=11.70;BaseQRankSum=-0.61;DP=125;ExcessHet=0.0000;FS=1.010;MQ=60.00;MQRankSum=0;QD=11.70;ReadPosRankSum=0.674;SOR=0.869;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,267 0/1:30,26:56:99:.:655,0,804:14,16,11,15 +chrX 1893553 . G A 2800 . AC=2;AF=0.667;AN=3;AS_AltDP=89;AS_QD=23.98;BaseQRankSum=0.46;DP=122;ExcessHet=0.0000;FS=0.800;MQ=60.00;MQRankSum=0;QD=23.98;ReadPosRankSum=-0.114;SOR=0.573;VarDP=118 GT:AD:DP:GQ:PL:SB 1:0,59:59:99:1995,0:0,0,28,31 0/1:29,30:59:99:835,0,791:16,13,18,12 +chrX 1894265 . GTC G 1625.97 . AC=2;AF=0.667;AN=3;AS_AltDP=43;AS_QD=33.84;DP=113;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=38.72;SOR=0.941;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,160 1/1:0,43:43:99:.:1665,130,0:0,0,19,24 +chrX 1894345 . G A 1139 . AC=2;AF=0.667;AN=3;AS_AltDP=37;AS_QD=30.76;BaseQRankSum=2.245;DP=108;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=30.76;ReadPosRankSum=0.456;SOR=0.245;VarDP=38 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,160 1/1:1,37:38:99:.:1169,103,0:0,1,18,19 +chrX 1894404 . C T 1388 . AC=2;AF=0.667;AN=3;AS_AltDP=42;AS_QD=33.76;DP=107;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.76;SOR=0.892;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,160 1/1:0,42:42:99:.:1418,126,0:0,0,23,19 +chrX 1894420 . C CCTCT 43.97 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=1.60;BaseQRankSum=-0.602;DP=96;ExcessHet=0.0000;FS=10.268;MQ=60.00;MQRankSum=0;QD=1.60;ReadPosRankSum=0.183;SOR=1.407;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 1:25,27:52:83:.:83,0:15,10,9,18 0/0:.:42:44:42:0,44,953 +chrX 1894548 . GTCTC G 1221.97 . AC=2;AF=0.667;AN=3;AS_AltDP=29;AS_QD=29.63;DP=72;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.48;SOR=1.071;VarDP=29 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:40:36:37:0,36 1/1:0,29:29:87:.:1261,87,0:0,0,12,17 +chrX 1894666 . A T 2558 . AC=3;AF=1.00;AN=3;AS_AltDP=80;AS_QD=32.35;DP=82;ExcessHet=0.0000;FS=0.000;MQ=59.72;QD=32.35;SOR=0.796;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,43:43:99:1374,0:0,0,21,22 1/1:0,37:37:99:1214,110,0:0,0,21,16 +chrX 1895510 . C CACACACACACAG 3368.97 . AC=2;AF=0.667;AN=3;AS_AltDP=80;AS_QD=34.78;BaseQRankSum=0.426;DP=121;ExcessHet=0.0000;FS=14.213;MQ=59.95;MQRankSum=0;QD=34.78;ReadPosRankSum=0.61;SOR=1.005;VarDP=98 GT:AD:DP:GQ:PL:SB 1:0,43:43:99:1920,0:0,0,16,27 0/1:18,37:55:99:1488,0,585:12,6,15,22 +chrX 1895644 . CACAGACACAA C 1436.97 . AC=2;AF=0.667;AN=3;AS_AltDP=33;AS_QD=27.46;DP=97;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.73;SOR=1.981;VarDP=33 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:74:56:0,74 1/1:0,33:33:99:.:1476,100,0:0,0,9,24 +chrX 1895716 . TACACAGAC T,CACACAGAC 1851 . AC=3,0;AF=1.00,0.00;AN=3;AS_AltDP=58,0;AS_QD=25.42,0.56;BaseQRankSum=0.333;DP=84;ExcessHet=0.0000;FS=1.074;MQ=59.78;MQRankSum=0;QD=25.42;ReadPosRankSum=-2.515;SOR=0.892;VarDP=74 GT:AD:DP:GQ:PL:SB 1:16,23,0:39:99:306,0,1022:7,9,9,14 1/1:0,35,0:35:99:1575,105,0,1568,105,1566:0,0,14,21 +chrX 1895732 . GAC G 1838.97 . AC=3;AF=1.00;AN=3;AS_AltDP=61;AS_QD=23.48;BaseQRankSum=-1.447;DP=86;ExcessHet=0.0000;FS=0.000;MQ=59.78;MQRankSum=0;QD=23.48;ReadPosRankSum=-2.846;SOR=0.629;VarDP=80 GT:AD:DP:GQ:PL:SB 1:18,24:42:99:261,0:7,11,9,15 1/1:1,37:38:90:1617,90,0:0,1,15,22 +chrX 1895854 . GAC G,CAC 1751 . AC=3,0;AF=1.00,0.00;AN=3;AS_AltDP=64,2;AS_QD=22.54,0.00;BaseQRankSum=-1.839;DP=103;ExcessHet=0.0000;FS=10.502;MQ=59.74;MQRankSum=0;QD=21.99;ReadPosRankSum=-0.399;SOR=0.849;VarDP=81 GT:AD:DP:GQ:PL:SB 1:15,29,2:46:99:520,0,1322:5,10,20,11 1/1:0,35,0:35:99:1261,105,0,1261,105,1261:0,0,19,16 +chrX 1896577 . A G 4564 . AC=3;AF=1.00;AN=3;AS_AltDP=131;AS_QD=34.80;BaseQRankSum=0.864;DP=139;ExcessHet=0.0000;FS=3.497;MQ=60.00;MQRankSum=0;QD=34.80;ReadPosRankSum=-0.96;SOR=0.601;VarDP=132 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,64:65:99:.:.:1808,0:.:1,0,29,35 1|1:0,67:67:99:0|1:1896577_A_G:2786,201,0:1896577:0,0,29,38 +chrX 1896606 . T C 4686 . AC=3;AF=1.00;AN=3;AS_AltDP=128;AS_QD=30.41;DP=132;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=36.84;SOR=1.010;VarDP=128 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,60:60:99:.:.:1905,0:.:0,0,26,34 1|1:0,68:68:99:0|1:1896577_A_G:2811,204,0:1896577:0,0,29,39 +chrX 1896652 . G A 2100 . AC=3;AF=1.00;AN=3;AS_AltDP=93;AS_QD=17.90;BaseQRankSum=2.192;DP=124;ExcessHet=0.0000;FS=0.000;MQ=59.54;MQRankSum=-0.149;QD=17.90;ReadPosRankSum=-0.445;SOR=0.698;VarDP=119 GT:AD:DP:GQ:PL:SB 1:25,31:56:99:209,0:11,14,12,19 1/1:1,62:63:99:1921,178,0:1,0,31,31 +chrX 1896809 . C A 2503 . AC=3;AF=1.00;AN=3;AS_AltDP=90;AS_QD=26.39;BaseQRankSum=1.766;DP=107;ExcessHet=0.0000;FS=0.000;MQ=56.53;MQRankSum=2.544;QD=26.39;ReadPosRankSum=1.042;SOR=0.990;VarDP=96 GT:AD:DP:GQ:PL:SB 1:3,47:50:99:1308,0:2,1,30,17 1/1:3,43:46:67:1225,67,0:1,2,21,22 +chrX 1896885 . C T 2046 . AC=2;AF=0.667;AN=3;AS_AltDP=48;AS_QD=29.36;DP=109;ExcessHet=0.0000;FS=0.000;MQ=52.46;QD=43.25;SOR=1.179;VarDP=48 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:61:59:61:.:.:0,59 1|1:0,48:48:99:.:0|1:1896885_C_T:2076,144,0:1896885:0,0,19,29 +chrX 1896896 . C T 2289 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=34.18;DP=113;ExcessHet=0.0000;FS=0.000;MQ=52.92;QD=44.60;SOR=0.941;VarDP=52 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:61:59:61:.:.:0,59 1|1:0,52:52:99:.:0|1:1896885_C_T:2319,157,0:1896885:0,0,23,29 +chrX 1896905 . A G 2153 . AC=2;AF=0.667;AN=3;AS_AltDP=49;AS_QD=30.73;DP=110;ExcessHet=0.0000;FS=0.000;MQ=52.09;QD=44.55;SOR=0.818;VarDP=49 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:61:59:61:.:.:0,59 1|1:0,49:49:99:.:0|1:1896885_C_T:2183,147,0:1896885:0,0,23,26 +chrX 1896908 . G T 2008 . AC=2;AF=0.667;AN=3;AS_AltDP=46;AS_QD=33.54;DP=109;ExcessHet=0.0000;FS=0.000;MQ=53.10;QD=44.30;SOR=0.976;VarDP=46 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:61:59:61:.:.:0,59 1|1:0,46:46:99:.:0|1:1896885_C_T:2038,138,0:1896885:0,0,20,26 +chrX 1897046 . T C 1968 . AC=2;AF=0.667;AN=3;AS_AltDP=49;AS_QD=31.04;BaseQRankSum=1.344;DP=113;ExcessHet=0.0000;FS=0.000;MQ=54.79;MQRankSum=-0.996;QD=39.18;ReadPosRankSum=-0.413;SOR=0.818;VarDP=51 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:61:59:61:.:.:0,59 1|1:2,49:51:69:.:0|1:1897046_T_C:1998,69,0:1897046:1,1,26,23 +chrX 1897066 . A G 2249 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=24.95;BaseQRankSum=1.406;DP=116;ExcessHet=0.0000;FS=0.000;MQ=55.16;MQRankSum=-0.944;QD=41.44;ReadPosRankSum=-0.537;SOR=0.730;VarDP=55 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:61:59:61:.:.:0,59 1|1:2,53:55:81:.:0|1:1897046_T_C:2279,81,0:1897046:1,1,26,27 +chrX 1897069 . A G 2249 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=29.78;BaseQRankSum=2.72;DP=117;ExcessHet=0.0000;FS=0.000;MQ=55.25;MQRankSum=-0.944;QD=41.44;ReadPosRankSum=-0.697;SOR=0.730;VarDP=55 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:61:59:61:.:.:0,59 1|1:2,53:55:81:.:0|1:1897046_T_C:2279,81,0:1897046:1,1,26,27 +chrX 1897124 . G C 1815 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=33.55;DP=117;ExcessHet=0.0000;FS=0.000;MQ=56.78;QD=33.55;SOR=0.729;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:59:61:0,59 1/1:0,55:55:99:.:1845,165,0:0,0,28,27 +chrX 1897825 . C G 1989 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=33.65;DP=123;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.65;SOR=0.986;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:59:61:0,59 1/1:0,60:60:99:.:2019,180,0:0,0,26,34 +chrX 1898076 . C A 2277 . AC=3;AF=1.00;AN=3;AS_AltDP=100;AS_QD=17.35;BaseQRankSum=2.039;DP=139;ExcessHet=0.0000;FS=3.705;MQ=59.92;MQRankSum=0;QD=17.35;ReadPosRankSum=1.501;SOR=0.419;VarDP=133 GT:AD:DP:GQ:PL:SB 1:33,33:66:99:101,0:13,20,17,16 1/1:0,67:67:99:2206,201,0:0,0,31,36 +chrX 1898428 . C CA 790.97 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=15.09;BaseQRankSum=0.841;DP=121;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=15.09;ReadPosRankSum=1.317;SOR=0.627;VarDP=55 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:99:62:.:.:0,535 0|1:27,28:55:99:.:0|1:1898428_C_CA:830,0,1039:1898428:13,14,14,14 +chrX 1898430 . A G 703 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=13.33;BaseQRankSum=-0.379;DP=121;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.33;ReadPosRankSum=-1.507;SOR=0.765;VarDP=55 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:99:62:.:.:0,535 0|1:28,27:55:99:.:1|0:1898428_C_CA:733,0,1093:1898428:14,14,13,14 +chrX 1898610 . CT C 322.97 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=9.28;BaseQRankSum=1.677;DP=114;ExcessHet=0.0000;FS=4.643;MQ=59.93;MQRankSum=0;QD=9.28;ReadPosRankSum=-0.916;SOR=0.646;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,535 0/1:21,18:39:99:.:362,0,437:13,8,8,10 +chrX 1898669 . A G 736 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=7.58;BaseQRankSum=-1.287;DP=106;ExcessHet=0.0000;FS=3.693;MQ=60.00;MQRankSum=0;QD=7.58;ReadPosRankSum=0.542;SOR=1.084;VarDP=101 GT:AD:DP:GQ:PL:SB 1:21,28:49:99:197,0:9,12,17,11 0/1:28,24:52:99:569,0,753:16,12,14,10 +chrX 1898947 . C T 3460 . AC=2;AF=0.667;AN=3;AS_AltDP=114;AS_QD=21.95;BaseQRankSum=2.297;DP=163;ExcessHet=0.0000;FS=10.935;MQ=59.98;MQRankSum=0;QD=21.95;ReadPosRankSum=0.138;SOR=0.883;VarDP=159 GT:AD:DP:GQ:PL:SB 1:0,85:85:99:2733,0:0,0,48,37 0/1:45,29:74:99:757,0,1145:19,26,18,11 +chrX 1899124 . C T 669 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=12.05;BaseQRankSum=0.89;DP=136;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=12.05;ReadPosRankSum=0.647;SOR=0.586;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:76:99:76:0,248 0/1:31,27:58:99:.:699,0,798:14,17,13,14 +chrX 1899276 . CT C 641.97 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=5.92;BaseQRankSum=-0.663;DP=134;ExcessHet=0.0000;FS=3.425;MQ=60.00;MQRankSum=0;QD=5.92;ReadPosRankSum=0.684;SOR=1.051;VarDP=115 GT:AD:DP:GQ:PL:SB 1:28,36:64:99:233,0:13,15,20,16 0/1:30,21:51:99:448,0,701:17,13,14,7 +chrX 1899294 . A G 881 . AC=2;AF=0.667;AN=3;AS_AltDP=64;AS_QD=7.01;BaseQRankSum=1.307;DP=138;ExcessHet=0.0000;FS=6.473;MQ=60.00;MQRankSum=0;QD=7.01;ReadPosRankSum=1.636;SOR=0.968;VarDP=130 GT:AD:DP:GQ:PL:SB 1:30,41:71:99:418,0:13,17,22,19 0/1:36,23:59:99:493,0,968:18,18,15,8 +chrX 1899333 . C T 894 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=15.66;BaseQRankSum=0.417;DP=136;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=15.66;ReadPosRankSum=0.606;SOR=0.833;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:76:99:76:0,461 0/1:23,36:59:99:.:924,0,858:11,12,16,20 +chrX 1899341 . C G 627 . AC=2;AF=0.667;AN=3;AS_AltDP=66;AS_QD=5.02;BaseQRankSum=0.372;DP=132;ExcessHet=0.0000;FS=0.000;MQ=59.96;MQRankSum=0;QD=5.02;ReadPosRankSum=-0.31;SOR=0.659;VarDP=131 GT:AD:DP:GQ:PL:SB 1:29,43:72:99:105,0:11,18,17,26 0/1:36,23:59:99:552,0,1419:16,20,11,12 +chrX 1899432 . A G 707 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=6.46;BaseQRankSum=0.685;DP=124;ExcessHet=0.0000;FS=6.282;MQ=59.96;MQRankSum=0;QD=6.46;ReadPosRankSum=0.593;SOR=1.349;VarDP=114 GT:AD:DP:GQ:PL:SB 1:25,35:60:99:266,0:6,19,10,25 0/1:35,19:54:99:471,0,1014:18,17,5,14 +chrX 1900240 . G T 2044 . AC=3;AF=1.00;AN=3;AS_AltDP=93;AS_QD=17.00;BaseQRankSum=-0.22;DP=125;ExcessHet=0.0000;FS=1.771;MQ=59.38;MQRankSum=-0.784;QD=17.00;ReadPosRankSum=1.167;SOR=0.981;VarDP=122 GT:AD:DP:GQ:PL:SB 1:29,44:73:99:447,0:13,16,16,28 1/1:0,49:49:99:1627,147,0:0,0,20,29 +chrX 1900300 . A G 4011 . AC=3;AF=1.00;AN=3;AS_AltDP=123;AS_QD=32.85;DP=127;ExcessHet=0.0000;FS=0.000;MQ=59.76;QD=32.85;SOR=0.812;VarDP=123 GT:AD:DP:GQ:PL:SB 1:0,76:76:99:2491,0:0,0,34,42 1/1:0,47:47:99:1550,141,0:0,0,24,23 +chrX 1900503 . AT A 3392.97 . AC=3;AF=1.00;AN=3;AS_AltDP=96;AS_QD=32.39;DP=104;ExcessHet=0.0000;FS=0.000;MQ=59.93;QD=35.75;SOR=0.870;VarDP=96 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,47:47:99:.:.:1658,0:.:0,0,17,30 1|1:0,49:49:99:0|1:1900484_G_A:1774,147,0:1900484:0,0,27,22 +chrX 1900593 . A T 634 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=14.76;BaseQRankSum=-1.306;DP=100;ExcessHet=0.0000;FS=2.649;MQ=60.00;MQRankSum=0;QD=14.76;ReadPosRankSum=0.66;SOR=0.327;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:52:99:52:0,154 0/1:21,24:45:99:.:664,0,592:7,14,11,13 +chrX 1900658 . G C 627 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=12.88;BaseQRankSum=-0.587;DP=104;ExcessHet=0.0000;FS=3.978;MQ=60.00;MQRankSum=0;QD=12.88;ReadPosRankSum=-0.217;SOR=0.306;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:52:99:52:0,154 0/1:26,25:51:99:.:657,0,681:9,17,12,13 +chrX 1900737 . G C 1352 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=15.36;BaseQRankSum=1.85;DP=91;ExcessHet=0.0000;FS=1.774;MQ=59.73;MQRankSum=1.135;QD=15.36;ReadPosRankSum=0.569;SOR=0.942;VarDP=90 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:16,28:44:99:.:.:470,0:.:5,11,13,15 0|1:21,25:46:99:0|1:1900737_G_C:912,0,734:1900737:11,10,7,18 +chrX 1900743 . ATTT A,AT 1696.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=37,26;AS_QD=24.29,18.71;BaseQRankSum=0.241;DP=89;ExcessHet=0.0000;FS=9.640;MQ=59.54;MQRankSum=0.197;QD=21.17;ReadPosRankSum=0.86;SOR=1.360;VarDP=82 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 2:0,12,26:38:99:.:.:842,376,0:.:0,0,16,22 0|1:19,25,0:44:99:0|1:1900737_G_C:894,0,690,951,764,1715:1900737:11,8,6,19 +chrX 1900808 . C A 651 . AC=2;AF=0.667;AN=3;AS_AltDP=35;AS_QD=10.32;BaseQRankSum=-0.156;DP=67;ExcessHet=0.0000;FS=2.021;MQ=59.75;MQRankSum=1.001;QD=10.32;ReadPosRankSum=1.411;SOR=0.473;VarDP=66 GT:AD:DP:GQ:PL:SB 1:9,15:24:99:182,0:5,4,5,10 0/1:22,20:42:99:499,0,598:8,14,12,8 +chrX 1900907 . AAT A 827.97 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=16.06;BaseQRankSum=2.286;DP=99;ExcessHet=0.0000;FS=1.040;MQ=60.00;MQRankSum=0;QD=16.06;ReadPosRankSum=0.175;SOR=0.890;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:43:99:43:0,822 0/1:31,23:54:99:.:867,0,1181:15,16,10,13 +chrX 1900959 . T C 1099 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=20.53;BaseQRankSum=1.216;DP=100;ExcessHet=0.0000;FS=1.028;MQ=60.00;MQRankSum=0;QD=20.53;ReadPosRankSum=-0.649;SOR=0.892;VarDP=55 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:43:99:43:.:.:0,822 0|1:26,29:55:99:.:0|1:1900959_T_C:1129,0,983:1900959:14,12,17,12 +chrX 1900961 . T C 1099 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=20.53;BaseQRankSum=0.911;DP=99;ExcessHet=0.0000;FS=1.028;MQ=60.00;MQRankSum=0;QD=20.53;ReadPosRankSum=-0.677;SOR=0.892;VarDP=55 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:43:99:43:.:.:0,822 0|1:26,29:55:99:.:0|1:1900959_T_C:1129,0,983:1900959:14,12,17,12 +chrX 1900985 . C T 794 . AC=2;AF=0.667;AN=3;AS_AltDP=50;AS_QD=8.16;BaseQRankSum=2.695;DP=106;ExcessHet=0.0000;FS=3.774;MQ=59.95;MQRankSum=1.188;QD=8.16;ReadPosRankSum=0.342;SOR=1.120;VarDP=101 GT:AD:DP:GQ:PL:SB 1:22,29:51:99:294,0:11,11,17,12 0/1:29,21:50:99:530,0,773:17,12,15,6 +chrX 1901069 . C T 900 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=16.03;BaseQRankSum=-0.553;DP=124;ExcessHet=0.0000;FS=21.078;MQ=60.00;MQRankSum=0;QD=16.03;ReadPosRankSum=-0.98;SOR=0.957;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,1591 0/1:24,34:58:99:.:930,0,651:18,6,13,21 +chrX 1901239 . G A 665 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=12.41;BaseQRankSum=2.171;DP=120;ExcessHet=0.0000;FS=3.670;MQ=59.90;MQRankSum=-1.038;QD=12.41;ReadPosRankSum=-1.479;SOR=1.220;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,1591 0/1:30,26:56:99:.:695,0,695:15,15,16,10 +chrX 1901334 . C T 771 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=15.40;BaseQRankSum=0.258;DP=117;ExcessHet=0.0000;FS=1.050;MQ=59.90;MQRankSum=-0.817;QD=15.40;ReadPosRankSum=0.787;SOR=0.540;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,1591 0/1:22,30:52:99:.:801,0,549:10,12,15,15 +chrX 1901465 . CA C 2370.97 . AC=3;AF=1.00;AN=3;AS_AltDP=92;AS_QD=25.91;BaseQRankSum=-0.264;DP=116;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=25.91;ReadPosRankSum=-1.529;SOR=0.260;VarDP=93 GT:AD:DP:GQ:PL:SB 1:1,50:51:99:1311,0:0,1,28,22 1/1:0,42:42:99:1099,126,0:0,0,16,26 +chrX 1901811 . C CT 853.97 . AC=2;AF=0.667;AN=3;AS_AltDP=32;AS_QD=27.91;DP=121;ExcessHet=0.0000;FS=0.000;MQ=59.51;QD=27.91;SOR=1.284;VarDP=32 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:79:99:79:0,471 1/1:0,32:32:96:.:893,96,0:0,0,20,12 +chrX 1901856 . T C 2495 . AC=3;AF=1.00;AN=3;AS_AltDP=83;AS_QD=29.71;BaseQRankSum=2.974;DP=89;ExcessHet=0.0000;FS=7.057;MQ=57.77;MQRankSum=-0.301;QD=29.71;ReadPosRankSum=-0.644;SOR=0.584;VarDP=85 GT:AD:DP:GQ:PL:SB 1:2,48:50:99:1487,0:2,0,19,29 1/1:0,35:35:99:1038,104,0:0,0,17,18 +chrX 1902028 . A C 682 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=14.24;BaseQRankSum=0.511;DP=111;ExcessHet=0.0000;FS=2.441;MQ=58.28;MQRankSum=-2.22;QD=14.24;ReadPosRankSum=1.185;SOR=0.404;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:99:60:0,993 0/1:24,26:50:99:.:712,0,634:16,8,15,11 +chrX 1902119 . C CTT 623.97 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=15.79;BaseQRankSum=1.013;DP=113;ExcessHet=0.0000;FS=0.000;MQ=59.38;MQRankSum=-1.267;QD=15.79;ReadPosRankSum=-0.228;SOR=0.850;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:99:60:0,993 0/1:19,23:42:99:.:663,0,581:9,10,10,13 +chrX 1902406 . T C 860 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=11.87;BaseQRankSum=-4.028;DP=137;ExcessHet=0.0000;FS=0.000;MQ=59.75;MQRankSum=-0.987;QD=11.87;ReadPosRankSum=1.145;SOR=0.749;VarDP=75 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:99:60:0,993 0/1:38,37:75:99:.:890,0,1087:18,20,17,20 +chrX 1902671 . T G 486 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=10.75;BaseQRankSum=0.419;DP=113;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=10.75;ReadPosRankSum=0.209;SOR=0.611;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:99:60:0,993 0/1:28,20:48:99:.:516,0,770:12,16,9,11 +chrX 1903449 . G C 324 . AC=1;AF=0.333;AN=3;AS_AltDP=40;AS_QD=5.21;BaseQRankSum=-1.531;DP=133;ExcessHet=0.0000;FS=12.986;MQ=60.00;MQRankSum=0;QD=5.21;ReadPosRankSum=-1.714;SOR=0.707;VarDP=68 GT:AD:DP:GQ:MIN_DP:PL:SB 1:28,40:68:99:.:354,0:9,19,23,17 0/0:.:62:99:62:0,99,1360 +chrX 1903465 . A G 5619 . AC=3;AF=1.00;AN=3;AS_AltDP=129;AS_QD=31.15;DP=129;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.79;SOR=0.840;VarDP=129 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,70:70:99:.:.:3073,0:.:0,0,33,37 1|1:0,59:59:99:0|1:1903465_A_G:2576,178,0:1903465:0,0,27,32 +chrX 1903474 . T C 5461 . AC=3;AF=1.00;AN=3;AS_AltDP=124;AS_QD=30.49;DP=125;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.28;SOR=0.865;VarDP=124 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,65:65:99:.:.:2915,0:.:0,0,30,35 1|1:0,59:59:99:0|1:1903465_A_G:2576,178,0:1903465:0,0,27,32 +chrX 1903552 . A G 346 . AC=1;AF=0.333;AN=3;AS_AltDP=42;AS_QD=5.37;BaseQRankSum=-2.138;DP=129;ExcessHet=0.0000;FS=8.448;MQ=60.00;MQRankSum=0;QD=5.37;ReadPosRankSum=-0.234;SOR=0.929;VarDP=70 GT:AD:DP:GQ:MIN_DP:PL:SB 1:28,42:70:99:.:376,0:17,11,17,25 0/0:.:57:99:57:0,120,1800 +chrX 1903606 . G A 1042 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=17.02;BaseQRankSum=1.623;DP=127;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=17.02;ReadPosRankSum=2.467;SOR=0.623;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,1471 0/1:25,38:63:99:.:1072,0,570:15,10,22,16 +chrX 1903649 . C T 1062 . AC=1;AF=0.333;AN=3;AS_AltDP=39;AS_QD=17.06;BaseQRankSum=0.951;DP=128;ExcessHet=0.0000;FS=0.978;MQ=60.00;MQRankSum=0;QD=17.06;ReadPosRankSum=-1.005;SOR=0.790;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,1471 0/1:25,39:64:99:.:1092,0,606:12,13,21,18 +chrX 1904183 . T C 917 . AC=2;AF=0.667;AN=3;AS_AltDP=50;AS_QD=10.52;BaseQRankSum=0.27;DP=98;ExcessHet=0.0000;FS=2.838;MQ=60.00;MQRankSum=0;QD=10.52;ReadPosRankSum=0.329;SOR=0.416;VarDP=90 GT:AD:DP:GQ:PL:SB 1:17,31:48:99:435,0:9,8,17,14 0/1:23,19:42:99:512,0,642:16,7,10,9 +chrX 1904208 . A G 794 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=8.77;BaseQRankSum=0.08;DP=98;ExcessHet=0.0000;FS=0.778;MQ=60.00;MQRankSum=0;QD=8.77;ReadPosRankSum=0.981;SOR=0.848;VarDP=94 GT:AD:DP:GQ:PL:SB 1:20,30:50:99:310,0:8,12,16,14 0/1:23,21:44:99:514,0,646:14,9,12,9 +chrX 1904275 . C A 3047 . AC=3;AF=1.00;AN=3;AS_AltDP=92;AS_QD=33.45;DP=102;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.45;SOR=0.737;VarDP=92 GT:AD:DP:GQ:PL:SB 1:0,46:46:99:1549,0:0,0,22,24 1/1:0,46:46:99:1528,138,0:0,0,23,23 +chrX 1904627 . A ATGATGATAATGGTGATGATGTGATGGTGATGATAGTGATGGTGATGATGGTGATGGTGAGGATGCTGATGGTGATGACGGTGATAATGGTGAGAATGATGACAGTGATGATGTGATGGTGATGATGATGATAGGGTGAAAATGTGATGATGATGATGGTGATGATATGGTGATGGTGATGGTGATGATAGTGATGTATGGTGATGGTGATGG,ATGATGATAATGGTGATGATGTGATGGTGATGATAGTGATGGTGATGATGGTGATGGTGAGGATGCTGATGGTGATGACGGTGATAATGGTGATAATGATGACAGTGATGATGTGATGGTGATGATGATGATAGGGTGAAAATGTGATGATGATGATGGTGATGATATGGTGATGGTGATGGTGATGATAGTGATGTATGGTGATGGTGATGG,ATGATGATAATGGTGATGATGTGATGGTGATGATAGTGATGGTGATGATGGTGATGATGATGATGGAGATGAGGATGATGGTGATGATGGTGATAATGGTGAGAATGATGACAGTGATGATGTGATGGTGATGATGATGATAGGGTGAAAATGTGATGATGATGATGGTGATGATATGGTGATGGTGATGGTGATGATAGTGATGTATGGTGATGGTGATGG,ATGATGATAATGGTGATGATGTGATGGTGATGATAGTGATGGTGATGATGGTGATGATGATGATGGAGATGAGGATGATGGTGATGATGGTGATAATGGTGATAATGATGACAGTGATGATGTGATGGTGATGATGATGATAGGGTGAAAATGTGATGATGATGATGGTGATGATATGGTGATGGTGATGGTGATGATAGTGATGTATGGTGATGGTGATGG,ATGATGATAATGGTGATGATGTGATGGTGATGATAGTGATGGTGATGATGGTGATGGTGAGGATGCTGATGGTGATGACGGTGATGGTGATGATGGTGATAATGGTGATAATGATGACAGTGATGATGTGATGGTGATGATGATGATAGGGTGAAAATGTGATGATGATGATGGTGATGATATGGTGATGGTGATGGTGATGATAGTGATGTATGGTGATGGTGATGG 3859.97 . AC=1,0,0,1,1;AF=0.333,0.00,0.00,0.333,0.333;AN=3;AS_AltDP=0,0,0,5,10;AS_QD=35.77,33.34,31.16,26.55,34.25;BaseQRankSum=2.357;DP=135;ExcessHet=0.0000;FS=8.280;MQ=55.71;MQRankSum=-1.719;QD=185.67;ReadPosRankSum=1.204;SOR=0.766;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,0,0,0,3,0:3:0:1815,0,0,377,273,1127:0,0,2,1 4/5:6,0,0,0,2,10:18:56:2084,1381,1284,1381,1284,1284,1381,1284,1284,1284,473,485,485,485,367,180,193,193,193,0,56:5,1,4,8 +chrX 1905209 . A G 690 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=14.12;BaseQRankSum=-2.008;DP=105;ExcessHet=0.0000;FS=2.455;MQ=60.00;MQRankSum=0;QD=14.12;ReadPosRankSum=0.284;SOR=0.346;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:54:99:54:0,491 0/1:23,28:51:99:.:720,0,637:8,15,13,15 +chrX 1905769 . G A 830 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=14.83;BaseQRankSum=0.15;DP=112;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.83;ReadPosRankSum=1.032;SOR=0.685;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:54:99:54:0,491 0/1:27,31:58:99:.:860,0,964:14,13,16,15 +chrX 1905791 . A G 1139 . AC=2;AF=0.667;AN=3;AS_AltDP=66;AS_QD=9.91;BaseQRankSum=0.627;DP=119;ExcessHet=0.0000;FS=8.497;MQ=60.00;MQRankSum=0;QD=9.91;ReadPosRankSum=0.089;SOR=0.640;VarDP=118 GT:AD:DP:GQ:PL:SB 1:23,34:57:99:292,0:16,7,15,19 0/1:29,32:61:99:877,0,1089:15,14,15,17 +chrX 1905851 . T C 1849 . AC=3;AF=1.00;AN=3;AS_AltDP=87;AS_QD=16.34;BaseQRankSum=-1.498;DP=120;ExcessHet=0.0000;FS=4.089;MQ=60.00;MQRankSum=0;QD=16.34;ReadPosRankSum=-0.266;SOR=0.382;VarDP=115 GT:AD:DP:GQ:PL:SB 1:28,31:59:44:44,0:17,11,14,17 1/1:0,56:56:99:1835,168,0:0,0,30,26 +chrX 1906144 . G A 323 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=6.66;BaseQRankSum=-1.109;DP=112;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=6.66;ReadPosRankSum=-0.264;SOR=0.724;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 1:21,32:53:99:.:353,0:10,11,15,17 0/0:.:58:98:58:0,98,1440 +chrX 1906512 . G A 859 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=14.57;BaseQRankSum=0.529;DP=119;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.57;ReadPosRankSum=-0.448;SOR=0.725;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:99:56:0,1415 0/1:29,32:61:99:.:889,0,775:17,12,19,13 +chrX 1906951 . T C 820 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=14.41;BaseQRankSum=-0.589;DP=115;ExcessHet=0.0000;FS=1.008;MQ=60.00;MQRankSum=0;QD=14.41;ReadPosRankSum=0.197;SOR=0.495;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:99:56:0,1415 0/1:28,31:59:99:.:850,0,765:17,11,17,14 +chrX 1906998 . G C 3747 . AC=2;AF=0.667;AN=3;AS_AltDP=88;AS_QD=32.28;BaseQRankSum=-1.252;DP=119;ExcessHet=0.0000;FS=5.497;MQ=59.92;MQRankSum=0;QD=32.28;ReadPosRankSum=-0.535;SOR=0.309;VarDP=117 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,60:60:99:.:.:2689,0:.:0,0,30,30 0|1:29,28:57:99:0|1:1906998_G_C:1088,0,1133:1906998:19,10,16,12 +chrX 1906999 . A G 3747 . AC=2;AF=0.667;AN=3;AS_AltDP=88;AS_QD=32.28;BaseQRankSum=-2.633;DP=120;ExcessHet=0.0000;FS=5.497;MQ=59.92;MQRankSum=0;QD=32.28;ReadPosRankSum=-0.423;SOR=0.309;VarDP=117 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,60:60:99:.:.:2689,0:.:0,0,30,30 0|1:29,28:57:99:0|1:1906998_G_C:1088,0,1133:1906998:19,10,16,12 +chrX 1907272 . G A 640 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=13.96;BaseQRankSum=0.487;DP=111;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.96;ReadPosRankSum=0.495;SOR=0.551;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:59:61:0,59 0/1:24,24:48:99:.:670,0,660:11,13,12,12 +chrX 1907407 . T G 965 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=16.58;BaseQRankSum=-1.002;DP=121;ExcessHet=0.0000;FS=3.626;MQ=60.00;MQRankSum=0;QD=16.58;ReadPosRankSum=0.66;SOR=1.103;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:59:61:0,59 0/1:25,35:60:99:.:995,0,679:13,12,14,21 +chrX 1907469 . G T 986 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=16.13;BaseQRankSum=-1.019;DP=125;ExcessHet=0.0000;FS=5.067;MQ=60.00;MQRankSum=0;QD=16.13;ReadPosRankSum=-0.098;SOR=0.805;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:59:61:0,59 0/1:26,37:63:99:.:1016,0,684:15,11,16,21 +chrX 1907893 . A G 3798 . AC=3;AF=1.00;AN=3;AS_AltDP=122;AS_QD=31.38;DP=129;ExcessHet=0.0000;FS=0.000;MQ=59.96;QD=31.38;SOR=0.868;VarDP=122 GT:AD:DP:GQ:PL:SB 1:0,67:67:99:2088,0:0,0,29,38 1/1:0,55:55:99:1740,165,0:0,0,27,28 +chrX 1908879 . G A 2722 . AC=2;AF=0.667;AN=3;AS_AltDP=88;AS_QD=23.72;BaseQRankSum=2.786;DP=119;ExcessHet=0.0000;FS=1.766;MQ=59.83;MQRankSum=-0.206;QD=23.72;ReadPosRankSum=1.345;SOR=0.941;VarDP=116 GT:AD:DP:GQ:PL:SB 1:0,67:67:99:2178,0:0,0,25,42 0/1:28,21:49:99:574,0,671:14,14,14,7 +chrX 1909078 . T G 679 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=11.82;BaseQRankSum=0.744;DP=122;ExcessHet=0.0000;FS=1.053;MQ=59.74;MQRankSum=-0.504;QD=11.82;ReadPosRankSum=-1.792;SOR=0.818;VarDP=60 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:60:99:60:.:.:0,1493 0|1:40,20:60:99:.:0|1:1909078_T_G:709,0,1578:1909078:21,19,9,11 +chrX 1909080 . G A 679 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=11.82;BaseQRankSum=1.227;DP=120;ExcessHet=0.0000;FS=1.053;MQ=59.74;MQRankSum=-0.504;QD=11.82;ReadPosRankSum=-1.754;SOR=0.818;VarDP=60 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:60:99:60:.:.:0,1493 0|1:40,20:60:99:.:0|1:1909078_T_G:709,0,1578:1909078:21,19,9,11 +chrX 1909571 . G A 3505 . AC=3;AF=1.00;AN=3;AS_AltDP=106;AS_QD=33.35;DP=109;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.35;SOR=0.731;VarDP=106 GT:AD:DP:GQ:PL:SB 1:0,55:55:99:1862,0:0,0,26,29 1/1:0,51:51:99:1673,153,0:0,0,28,23 +chrX 1909947 . A G 3924 . AC=3;AF=1.00;AN=3;AS_AltDP=123;AS_QD=32.15;DP=125;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.15;SOR=0.963;VarDP=123 GT:AD:DP:GQ:PL:SB 1:0,64:64:99:2049,0:0,0,28,36 1/1:0,59:59:99:1905,176,0:0,0,26,33 +chrX 1909999 . C CCT 3559.97 . AC=2;AF=0.667;AN=3;AS_AltDP=88;AS_QD=31.57;BaseQRankSum=1.892;DP=122;ExcessHet=0.0000;FS=3.072;MQ=59.60;MQRankSum=-0.944;QD=31.57;ReadPosRankSum=-0.676;SOR=0.409;VarDP=114 GT:AD:DP:GQ:PL:SB 1:0,61:61:99:2651,0:0,0,25,36 0/1:26,27:53:99:948,0,986:8,18,10,17 +chrX 1910000 . C CTGTGTGTG 912.97 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=17.96;BaseQRankSum=-2.493;DP=110;ExcessHet=0.0000;FS=0.000;MQ=59.43;MQRankSum=0.983;QD=17.96;ReadPosRankSum=-0.214;SOR=0.850;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:54:99:54:0,1453 0/1:28,25:53:99:.:952,0,1014:10,18,8,17 +chrX 1910061 . CCTCTTTCTCCCACTCT C 523.97 . AC=2;AF=0.667;AN=3;AS_AltDP=33;AS_QD=7.13;BaseQRankSum=0.901;DP=104;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=7.13;ReadPosRankSum=-0.433;SOR=0.646;VarDP=79 GT:AD:DP:GQ:PL:SB 1:18,18:36:17:17,0:7,11,8,10 0/1:28,15:43:99:546,0,1109:12,16,6,9 +chrX 1910228 . C CCTCT 1431.97 . AC=2;AF=0.667;AN=3;AS_AltDP=37;AS_QD=29.42;BaseQRankSum=1.151;DP=61;ExcessHet=0.0000;FS=3.017;MQ=59.45;MQRankSum=0;QD=29.42;ReadPosRankSum=0.154;SOR=0.292;VarDP=50 GT:AD:DP:GQ:PL:SB 1:1,23:24:99:929,0:0,1,9,14 0/1:12,14:26:99:542,0,458:3,9,5,9 +chrX 1910280 . TCTCA T 834.97 . AC=2;AF=0.667;AN=3;AS_AltDP=36;AS_QD=14.81;BaseQRankSum=-1.018;DP=64;ExcessHet=0.0000;FS=1.026;MQ=59.74;MQRankSum=0;QD=14.81;ReadPosRankSum=-0.695;SOR=0.897;VarDP=59 GT:AD:DP:GQ:PL:SB 1:11,18:29:99:236,0:6,5,7,11 0/1:12,18:30:99:638,0,407:4,8,7,11 +chrX 1910439 . A T 1945 . AC=3;AF=1.00;AN=3;AS_AltDP=61;AS_QD=32.38;DP=75;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.38;SOR=0.941;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:923,0:0,0,12,16 1/1:0,33:33:99:1052,99,0:0,0,15,18 +chrX 1910489 . CCTT C 307.97 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=11.57;BaseQRankSum=-0.34;DP=76;ExcessHet=0.0000;FS=1.477;MQ=60.00;MQRankSum=0;QD=11.57;ReadPosRankSum=-1.194;SOR=1.078;VarDP=30 GT:AD:DP:GQ:MIN_DP:PL:SB 1:11,19:30:99:.:347,0:5,6,7,12 0/0:.:47:32:41:0,32,876 +chrX 1910620 . CTCT C 365.97 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=13.97;BaseQRankSum=0.244;DP=75;ExcessHet=0.0000;FS=0.000;MQ=57.49;MQRankSum=-1.492;QD=13.97;ReadPosRankSum=0.732;SOR=0.853;VarDP=29 GT:AD:DP:GQ:MIN_DP:PL:SB 1:10,19:29:99:.:405,0:4,6,7,12 0/0:.:43:36:43:0,36,997 +chrX 1910635 . CCCCTCTTCCTGCCTCTCTTCCTCTCTTCCT C 188.97 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=6.51;BaseQRankSum=1.112;DP=85;ExcessHet=0.0000;FS=2.958;MQ=56.87;MQRankSum=-0.482;QD=6.51;ReadPosRankSum=0.22;SOR=1.057;VarDP=35 GT:AD:DP:GQ:MIN_DP:PL:SB 1:15,20:35:99:.:228,0:8,7,8,12 0/0:.:47:49:47:0,49,1085 +chrX 1910655 . CCTCTCTTCCTCCCTCTTCCTGCCTCTCTTCCT *,C 156.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=0,7;AS_QD=0.00,5.60;BaseQRankSum=0.774;DP=92;ExcessHet=0.0000;FS=3.418;MQ=57.46;MQRankSum=-0.261;QD=5.60;ReadPosRankSum=0.551;SOR=1.197;VarDP=35 GT:AD:DP:GQ:PL:SB 1:15,20,0:35:99:228,0,876:8,7,8,12 0/2:28,0,7:35:99:196,280,1392,0,1112,1085:11,17,1,6 +chrX 1910676 . G *,C 755 . AC=1,1;AF=0.500,0.500;AN=2;AS_AltDP=7,18;AS_QD=0.00,28.65;BaseQRankSum=0.217;DP=82;ExcessHet=0.0000;FS=0.000;MQ=58.35;MQRankSum=-0.424;QD=29.07;ReadPosRankSum=2.086;SOR=1.609;VarDP=27 GT:AD:DP:GQ:MIN_DP:PL:SB .:.:49:0:49:0,0,0 1/2:2,7,18:27:99:.:785,465,813,222,0,212:1,1,8,17 +chrX 1910760 . G C 3768 . AC=3;AF=1.00;AN=3;AS_AltDP=131;AS_QD=28.99;DP=141;ExcessHet=0.0000;FS=0.000;MQ=58.78;QD=28.99;SOR=0.838;VarDP=131 GT:AD:DP:GQ:PL:SB 1:0,70:70:99:2044,0:0,0,31,39 1/1:0,61:61:99:1754,183,0:0,0,30,31 +chrX 1911735 . T TCACA 290.97 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=6.23;BaseQRankSum=0.41;DP=90;ExcessHet=0.0000;FS=3.910;MQ=59.61;MQRankSum=-0.804;QD=6.23;ReadPosRankSum=0.424;SOR=0.668;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 1:22,31:53:99:.:330,0:13,9,14,17 0/0:.:31:36:30:0,36,610 +chrX 1913663 . AAC A 1133.97 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=18.05;BaseQRankSum=1.744;DP=135;ExcessHet=0.0000;FS=0.950;MQ=60.00;MQRankSum=0;QD=18.05;ReadPosRankSum=-1.26;SOR=0.538;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:99:66:0,1388 0/1:33,32:65:99:.:1173,0,1280:13,20,14,18 +chrX 1914200 . C T 965 . AC=2;AF=0.667;AN=3;AS_AltDP=65;AS_QD=8.43;BaseQRankSum=-1.171;DP=124;ExcessHet=0.0000;FS=0.695;MQ=60.00;MQRankSum=0;QD=8.43;ReadPosRankSum=1.271;SOR=0.580;VarDP=118 GT:AD:DP:GQ:PL:SB 1:28,40:68:99:381,0:18,10,24,16 0/1:25,25:50:99:614,0,719:13,12,12,13 +chrX 1914470 . A G 1021 . AC=2;AF=0.667;AN=3;AS_AltDP=70;AS_QD=7.96;BaseQRankSum=0.113;DP=136;ExcessHet=0.0000;FS=3.139;MQ=60.00;MQRankSum=0;QD=7.96;ReadPosRankSum=2.066;SOR=0.894;VarDP=132 GT:AD:DP:GQ:PL:SB 1:33,42:75:99:314,0:15,18,16,26 0/1:29,28:57:99:737,0,792:17,12,15,13 +chrX 1914747 . G A 606 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=11.36;BaseQRankSum=1.167;DP=121;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=11.36;ReadPosRankSum=0.455;SOR=0.770;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:34:63:0,34 0/1:32,24:56:99:.:636,0,864:14,18,10,14 +chrX 1915360 . G A 852 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=11.92;BaseQRankSum=0.321;DP=141;ExcessHet=0.0000;FS=1.936;MQ=59.95;MQRankSum=-1.087;QD=11.92;ReadPosRankSum=-1.186;SOR=0.773;VarDP=74 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:34:63:0,34 0/1:41,33:74:99:.:882,0,1143:19,22,18,15 +chrX 1915859 . C G 838 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=14.23;BaseQRankSum=1.393;DP=127;ExcessHet=0.0000;FS=0.975;MQ=60.00;MQRankSum=0;QD=14.23;ReadPosRankSum=0.397;SOR=0.518;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:34:63:0,34 0/1:29,32:61:99:.:868,0,723:16,13,16,16 +chrX 1916708 . C T 1293 . AC=2;AF=0.667;AN=3;AS_AltDP=34;AS_QD=25.24;DP=78;ExcessHet=0.0000;FS=0.000;MQ=52.38;QD=38.91;SOR=0.941;VarDP=34 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:42:99:42:.:.:0,155 1|1:0,34:34:99:.:0|1:1916708_C_T:1323,102,0:1916708:0,0,19,15 +chrX 1916760 . T C 575 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=13.44;BaseQRankSum=-0.666;DP=87;ExcessHet=0.0000;FS=1.174;MQ=53.76;MQRankSum=1.908;QD=13.44;ReadPosRankSum=0.898;SOR=0.459;VarDP=45 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:42:99:42:.:.:0,155 0|1:22,23:45:99:.:0|1:1916708_C_T:605,0,492:1916708:14,8,13,10 +chrX 1916783 . C T 2883 . AC=3;AF=1.00;AN=3;AS_AltDP=78;AS_QD=22.93;BaseQRankSum=2.139;DP=83;ExcessHet=0.0000;FS=3.413;MQ=57.91;MQRankSum=-0.448;QD=36.87;ReadPosRankSum=-1.46;SOR=0.556;VarDP=79 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,37:38:99:.:.:1227,0:.:0,1,18,19 1|1:0,41:41:99:0|1:1916708_C_T:1686,123,0:1916708:0,0,25,16 +chrX 1917333 . T C 568 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=10.49;BaseQRankSum=-0.345;DP=107;ExcessHet=0.0000;FS=3.642;MQ=60.00;MQRankSum=0;QD=10.49;ReadPosRankSum=1.48;SOR=0.501;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:44:49:0,44 0/1:32,25:57:99:.:598,0,847:13,19,13,12 +chrX 1917658 . A AG 2741.97 . AC=3;AF=1.00;AN=3;AS_AltDP=100;AS_QD=27.81;DP=113;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=27.81;SOR=0.957;VarDP=100 GT:AD:DP:GQ:PL:SB 1:0,38:38:99:1071,0:0,0,24,14 1/1:0,62:62:99:1710,185,0:0,0,32,30 +chrX 1917734 . T C 2484 . AC=2;AF=0.667;AN=3;AS_AltDP=85;AS_QD=22.05;BaseQRankSum=0.636;DP=117;ExcessHet=0.0000;FS=1.729;MQ=60.00;MQRankSum=0;QD=22.05;ReadPosRankSum=0.02;SOR=0.901;VarDP=114 GT:AD:DP:GQ:PL:SB 1:0,49:49:99:1588,0:0,0,28,21 0/1:29,36:65:99:926,0,663:15,14,20,16 +chrX 1918007 . A G 1741 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=33.42;DP=113;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.42;SOR=0.981;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,1514 1/1:0,53:53:99:.:1771,159,0:0,0,23,30 +chrX 1918250 . T TTTC 1799.97 . AC=2;AF=0.667;AN=3;AS_AltDP=41;AS_QD=33.34;DP=101;ExcessHet=0.0000;FS=0.000;MQ=59.38;QD=44.85;SOR=0.741;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,1514 1/1:0,41:41:99:.:1839,123,0:0,0,20,21 +chrX 1918307 . G A 154 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=2.79;BaseQRankSum=2.233;DP=101;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=2.79;ReadPosRankSum=-0.206;SOR=0.761;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 1:31,35:66:99:.:184,0:19,12,22,13 0/0:.:34:65:34:0,65,913 +chrX 1918316 . G A 426 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=16.29;BaseQRankSum=0.938;DP=95;ExcessHet=0.0000;FS=28.290;MQ=58.88;MQRankSum=-0.208;QD=16.29;ReadPosRankSum=-0.232;SOR=1.839;VarDP=28 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:65:99:65:.:.:0,1800 0|1:16,12:28:99:.:0|1:1918316_G_A:456,0,615:1918316:14,2,3,9 +chrX 1918319 . G T 420 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=15.00;BaseQRankSum=0.492;DP=95;ExcessHet=0.0000;FS=20.959;MQ=58.88;MQRankSum=-0.294;QD=15.00;ReadPosRankSum=-0.513;SOR=1.850;VarDP=30 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:65:99:65:.:.:0,1800 0|1:18,12:30:99:.:0|1:1918316_G_A:450,0,699:1918316:14,4,3,9 +chrX 1918323 . AACG A 413.97 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=15.62;BaseQRankSum=-1.083;DP=94;ExcessHet=0.0000;FS=20.209;MQ=58.84;MQRankSum=-0.252;QD=15.62;ReadPosRankSum=-1.092;SOR=1.853;VarDP=29 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:65:99:65:.:.:0,1800 0|1:17,12:29:99:.:0|1:1918316_G_A:453,0,678:1918316:13,4,3,9 +chrX 1918329 . G GGCA 410.97 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=15.00;BaseQRankSum=0.91;DP=95;ExcessHet=0.0000;FS=20.959;MQ=58.88;MQRankSum=-0.294;QD=15.00;ReadPosRankSum=-1.706;SOR=1.850;VarDP=30 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:65:99:65:.:.:0,1800 0|1:18,12:30:99:.:0|1:1918316_G_A:450,0,720:1918316:14,4,3,9 +chrX 1918331 . G A 420 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=15.00;BaseQRankSum=1.617;DP=95;ExcessHet=0.0000;FS=20.959;MQ=58.88;MQRankSum=-0.294;QD=15.00;ReadPosRankSum=-1.32;SOR=1.850;VarDP=30 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:65:99:65:.:.:0,1800 0|1:18,12:30:99:.:0|1:1918316_G_A:450,0,720:1918316:14,4,3,9 +chrX 1918332 . A G 336 . AC=1;AF=0.333;AN=3;AS_AltDP=10;AS_QD=13.07;BaseQRankSum=1.615;DP=93;ExcessHet=0.0000;FS=22.668;MQ=58.79;MQRankSum=-0.429;QD=13.07;ReadPosRankSum=-1.512;SOR=2.209;VarDP=28 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:65:99:65:.:.:0,1800 0|1:18,10:28:99:.:0|1:1918316_G_A:366,0,726:1918316:14,4,2,8 +chrX 1918336 . T C 333 . AC=1;AF=0.333;AN=3;AS_AltDP=10;AS_QD=12.52;BaseQRankSum=-1.215;DP=94;ExcessHet=0.0000;FS=23.447;MQ=58.84;MQRankSum=-0.47;QD=12.52;ReadPosRankSum=-1.906;SOR=2.208;VarDP=29 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:65:99:65:.:.:0,1800 0|1:19,10:29:99:.:0|1:1918316_G_A:363,0,768:1918316:15,4,2,8 +chrX 1918356 . T C 2912 . AC=3;AF=1.00;AN=3;AS_AltDP=92;AS_QD=31.98;DP=95;ExcessHet=0.0000;FS=0.000;MQ=59.45;QD=31.98;SOR=1.154;VarDP=92 GT:AD:DP:GQ:PL:SB 1:0,65:65:99:2002,0:0,0,38,27 1/1:0,27:27:81:940,81,0:0,0,17,10 +chrX 1918359 . T C 111 . AC=1;AF=0.333;AN=3;AS_AltDP=5;AS_QD=5.04;BaseQRankSum=0.3;DP=78;ExcessHet=0.0000;FS=4.521;MQ=58.46;MQRankSum=-1.209;QD=5.04;ReadPosRankSum=-2.391;SOR=0.739;VarDP=28 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:51:29:50:.:.:0,29 0|1:23,5:28:99:.:0|1:1918316_G_A:141,0,951:1918316:15,8,2,3 +chrX 1918360 . T C 111 . AC=1;AF=0.333;AN=3;AS_AltDP=5;AS_QD=5.04;BaseQRankSum=1.184;DP=78;ExcessHet=0.0000;FS=4.521;MQ=58.46;MQRankSum=-1.209;QD=5.04;ReadPosRankSum=-2.527;SOR=0.739;VarDP=28 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:51:29:50:.:.:0,29 0|1:23,5:28:99:.:0|1:1918316_G_A:141,0,951:1918316:15,8,2,3 +chrX 1918797 . G T 56 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=2.15;BaseQRankSum=0.018;DP=97;ExcessHet=0.0000;FS=38.634;MQ=59.64;MQRankSum=0.786;QD=2.15;ReadPosRankSum=0.695;SOR=3.895;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:51:29:50:0,29 0/1:26,14:40:86:.:86,0,620:7,19,13,1 +chrX 1918858 . G A 563 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=12.89;BaseQRankSum=0.671;DP=98;ExcessHet=0.0000;FS=6.235;MQ=60.00;MQRankSum=0;QD=12.89;ReadPosRankSum=1.198;SOR=0.991;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:51:29:50:0,29 0/1:23,23:46:99:.:593,0,572:9,14,14,9 +chrX 1918983 . TTTATTTATTTATTTA T 854.97 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=14.90;BaseQRankSum=0.246;DP=118;ExcessHet=0.0000;FS=14.024;MQ=60.00;MQRankSum=0;QD=14.90;ReadPosRankSum=0.045;SOR=1.496;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:51:29:50:0,29 0/1:35,25:60:99:.:894,0,1237:14,21,17,8 +chrX 1919419 . C T 804 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=15.74;BaseQRankSum=0.694;DP=121;ExcessHet=0.0000;FS=5.672;MQ=60.00;MQRankSum=0;QD=15.74;ReadPosRankSum=0.054;SOR=0.855;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,1429 0/1:22,31:53:99:.:834,0,541:13,9,13,18 +chrX 1919817 . AACACACAC AACAC,AACACACACAC,A 1030.97 . AC=1,1,1;AF=0.333,0.333,0.333;AN=3;AS_AltDP=16,20,17;AS_QD=2.00,12.85,19.40;BaseQRankSum=-0.518;DP=121;ExcessHet=0.0000;FS=1.206;MQ=59.63;MQRankSum=0.333;QD=16.21;ReadPosRankSum=1.635;SOR=0.440;VarDP=66 GT:AD:DP:GQ:PL:SB 1:12,16,3,0:31:58:58,0,341,552:7,5,8,11 2/3:1,0,17,17:35:99:1012,1077,1323,610,657,588,430,728,0,892:1,0,20,14 +chrX 1919901 . T C 635 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=5.99;BaseQRankSum=-0.486;DP=116;ExcessHet=0.0000;FS=7.378;MQ=60.00;MQRankSum=0;QD=5.99;ReadPosRankSum=0.602;SOR=1.332;VarDP=111 GT:AD:DP:GQ:PL:SB 1:24,26:50:49:49,0:9,15,17,9 0/1:35,26:61:99:616,0,969:22,13,17,9 +chrX 1920370 . C G 603 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=10.55;BaseQRankSum=-0.111;DP=128;ExcessHet=0.0000;FS=6.916;MQ=59.79;MQRankSum=0;QD=10.55;ReadPosRankSum=0.97;SOR=1.108;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:29:63:0,29 0/1:34,26:60:99:.:633,0,921:19,15,10,16 +chrX 1921338 . C A 152 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=2.84;BaseQRankSum=0.726;DP=125;ExcessHet=0.0000;FS=0.962;MQ=60.00;MQRankSum=0;QD=2.84;ReadPosRankSum=-1.043;SOR=0.927;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 1:30,34:64:99:.:182,0:16,14,20,14 0/0:.:58:55:58:0,55,1103 +chrX 1921493 . T C 124 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=2.41;BaseQRankSum=-1.546;DP=125;ExcessHet=0.0000;FS=2.112;MQ=60.00;MQRankSum=0;QD=2.41;ReadPosRankSum=1.916;SOR=0.440;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 1:29,35:64:99:.:154,0:11,18,16,19 0/0:.:58:55:58:0,55,1103 +chrX 1923125 . C G 3066 . AC=3;AF=1.00;AN=3;AS_AltDP=97;AS_QD=31.92;DP=100;ExcessHet=0.0000;FS=0.000;MQ=58.77;QD=31.92;SOR=0.799;VarDP=97 GT:AD:DP:GQ:PL:SB 1:0,52:52:99:1662,0:0,0,26,26 1/1:0,45:45:99:1434,134,0:0,0,20,25 +chrX 1923735 . C T 824 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=22.47;BaseQRankSum=-0.176;DP=103;ExcessHet=0.0000;FS=0.000;MQ=59.76;MQRankSum=1.857;QD=22.47;ReadPosRankSum=0.137;SOR=1.008;VarDP=38 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,805 0/1:9,29:38:99:.:854,0,189:4,5,11,18 +chrX 1923857 . C G 686 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=16.27;BaseQRankSum=0.861;DP=107;ExcessHet=0.0000;FS=2.624;MQ=60.00;MQRankSum=0;QD=16.27;ReadPosRankSum=-1.47;SOR=0.364;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,805 0/1:19,25:44:99:.:716,0,483:7,12,12,13 +chrX 1925650 . T C 671 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=15.93;BaseQRankSum=-1.768;DP=105;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=15.93;ReadPosRankSum=-0.561;SOR=0.723;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,805 0/1:18,26:44:99:.:701,0,483:11,7,16,10 +chrX 1925874 . C T 4407 . AC=3;AF=1.00;AN=3;AS_AltDP=134;AS_QD=32.87;BaseQRankSum=2.991;DP=141;ExcessHet=0.0000;FS=3.669;MQ=59.96;MQRankSum=0;QD=32.87;ReadPosRankSum=1.707;SOR=0.722;VarDP=135 GT:AD:DP:GQ:PL:SB 1:0,70:70:99:2323,0:0,0,41,29 1/1:1,64:65:99:2114,185,0:0,1,36,28 +chrX 1927184 . GA G 503.97 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=12.93;BaseQRankSum=-1.774;DP=111;ExcessHet=0.0000;FS=9.322;MQ=59.70;MQRankSum=-0.818;QD=12.93;ReadPosRankSum=0.432;SOR=1.746;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:61:55:0,61 0/1:18,24:42:99:.:543,0,351:10,8,7,17 +chrX 1927599 . G A 549 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=10.53;BaseQRankSum=0.393;DP=114;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=10.53;ReadPosRankSum=2.049;SOR=0.743;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:61:55:0,61 0/1:32,23:55:99:.:579,0,862:19,13,14,9 +chrX 1927707 . A C 819 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=14.15;BaseQRankSum=-0.268;DP=115;ExcessHet=0.0000;FS=5.299;MQ=60.00;MQRankSum=0;QD=14.15;ReadPosRankSum=-0.016;SOR=0.580;VarDP=60 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:59:61:55:.:.:0,61 0|1:36,24:60:99:.:0|1:1927707_A_C:849,0,1374:1927707:14,22,13,11 +chrX 1927729 . C T 870 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=14.29;BaseQRankSum=0.985;DP=118;ExcessHet=0.0000;FS=0.960;MQ=60.00;MQRankSum=0;QD=14.29;ReadPosRankSum=0.093;SOR=0.551;VarDP=63 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:59:61:55:.:.:0,61 0|1:37,26:63:99:.:0|1:1927707_A_C:900,0,1399:1927707:17,20,13,13 +chrX 1927765 . CT C 309.97 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=7.93;BaseQRankSum=-1.176;DP=113;ExcessHet=0.0000;FS=1.187;MQ=59.63;MQRankSum=0;QD=7.93;ReadPosRankSum=0.012;SOR=0.452;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:61:55:0,61 0/1:25,19:44:99:.:349,0,516:10,15,9,10 +chrX 1928280 . G A 726 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=12.19;BaseQRankSum=0.348;DP=122;ExcessHet=0.0000;FS=0.940;MQ=60.00;MQRankSum=0;QD=12.19;ReadPosRankSum=-0.958;SOR=0.826;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:61:55:0,61 0/1:32,30:62:99:.:756,0,806:16,16,16,14 +chrX 1928405 . C CT 316.97 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=11.13;BaseQRankSum=-0.558;DP=111;ExcessHet=0.0000;FS=11.498;MQ=58.80;MQRankSum=-1.443;QD=11.13;ReadPosRankSum=0.691;SOR=1.901;VarDP=32 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:59:61:55:.:.:0,61 0|1:13,19:32:99:.:0|1:1928405_C_CT:356,0,173:1928405:5,8,14,5 +chrX 1928645 . G C 784 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=15.36;BaseQRankSum=1.891;DP=110;ExcessHet=0.0000;FS=2.323;MQ=60.00;MQRankSum=0;QD=15.36;ReadPosRankSum=0.232;SOR=0.666;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:61:55:0,61 0/1:25,28:53:99:.:814,0,664:14,11,13,15 +chrX 1928757 . C G 938 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=14.03;BaseQRankSum=-1.519;DP=129;ExcessHet=0.0000;FS=6.381;MQ=60.00;MQRankSum=0;QD=14.03;ReadPosRankSum=3.317;SOR=0.772;VarDP=69 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:61:55:0,61 0/1:32,37:69:99:.:968,0,835:19,13,16,21 +chrX 1929322 . C CT 465.97 . AC=2;AF=0.667;AN=3;AS_AltDP=49;AS_QD=6.23;BaseQRankSum=1.829;DP=110;ExcessHet=0.0000;FS=11.494;MQ=59.68;MQRankSum=1.391;QD=6.23;ReadPosRankSum=0.269;SOR=0.885;VarDP=81 GT:AD:DP:GQ:PL:SB 1:15,27:42:99:194,0:6,9,17,10 0/1:17,22:39:99:311,0,231:6,11,12,10 +chrX 1929461 . A G 811 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=14.75;BaseQRankSum=1.577;DP=119;ExcessHet=0.0000;FS=0.000;MQ=59.35;MQRankSum=-1.931;QD=14.75;ReadPosRankSum=0.008;SOR=0.614;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:99:60:0,1010 0/1:27,30:57:99:.:841,0,696:15,12,16,14 +chrX 1929913 . G A 1769 . AC=2;AF=0.667;AN=3;AS_AltDP=86;AS_QD=12.16;BaseQRankSum=2.698;DP=156;ExcessHet=0.0000;FS=2.094;MQ=60.00;MQRankSum=0;QD=12.16;ReadPosRankSum=1.512;SOR=0.682;VarDP=148 GT:AD:DP:GQ:PL:SB 1:28,48:76:99:695,0:15,13,24,24 0/1:34,38:72:99:1104,0,905:14,20,21,17 +chrX 1930051 . T A 1374 . AC=2;AF=0.667;AN=3;AS_AltDP=83;AS_QD=10.25;BaseQRankSum=-0.286;DP=142;ExcessHet=0.0000;FS=1.396;MQ=59.97;MQRankSum=0;QD=10.25;ReadPosRankSum=1.543;SOR=0.872;VarDP=137 GT:AD:DP:GQ:PL:SB 1:33,48:81:99:481,0:20,13,28,20 0/1:21,35:56:99:923,0,517:9,12,20,15 +chrX 1930180 . T A 787 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=7.71;BaseQRankSum=1.013;DP=112;ExcessHet=0.0000;FS=2.530;MQ=60.00;MQRankSum=0;QD=7.71;ReadPosRankSum=1.579;SOR=0.442;VarDP=106 GT:AD:DP:GQ:PL:SB 1:24,28:52:99:161,0:14,10,13,15 0/1:29,25:54:99:656,0,756:17,12,14,11 +chrX 1930231 . C A 228 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=4.69;BaseQRankSum=-1.046;DP=124;ExcessHet=0.0000;FS=1.038;MQ=60.00;MQRankSum=0;QD=4.69;ReadPosRankSum=0.589;SOR=0.750;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 1:23,32:55:99:.:258,0:12,11,15,17 0/0:.:67:99:67:0,120,1800 +chrX 1930678 . G A 1067 . AC=2;AF=0.667;AN=3;AS_AltDP=74;AS_QD=7.41;BaseQRankSum=3.094;DP=151;ExcessHet=0.0000;FS=3.860;MQ=60.00;MQRankSum=0;QD=7.41;ReadPosRankSum=1.578;SOR=0.742;VarDP=148 GT:AD:DP:GQ:PL:SB 1:40,41:81:99:192,0:24,16,17,24 0/1:34,33:67:99:905,0,830:16,18,17,16 +chrX 1931114 . CA C 310.97 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=11.67;BaseQRankSum=0.391;DP=115;ExcessHet=0.0000;FS=5.905;MQ=60.00;MQRankSum=0;QD=11.67;ReadPosRankSum=0.174;SOR=1.109;VarDP=30 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:71:99:71:0,481 0/1:11,19:30:99:.:350,0,163:4,7,12,7 +chrX 1931194 . A C 874 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=7.73;BaseQRankSum=1.061;DP=119;ExcessHet=0.0000;FS=10.543;MQ=59.96;MQRankSum=0;QD=7.73;ReadPosRankSum=1.068;SOR=1.570;VarDP=117 GT:AD:DP:GQ:PL:SB 1:30,31:61:65:65,0:14,16,20,11 0/1:24,32:56:99:839,0,645:14,10,23,9 +chrX 1931575 . CT C 255.97 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=8.19;BaseQRankSum=-0.709;DP=108;ExcessHet=0.0000;FS=2.880;MQ=60.00;MQRankSum=0;QD=8.19;ReadPosRankSum=-0.53;SOR=1.244;VarDP=36 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,148 0/1:20,16:36:99:.:295,0,413:10,10,10,6 +chrX 1931924 . T TTTA 601.97 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=13.35;BaseQRankSum=1.039;DP=121;ExcessHet=0.0000;FS=1.163;MQ=59.36;MQRankSum=0.818;QD=13.35;ReadPosRankSum=1.14;SOR=1.012;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,148 0/1:30,18:48:99:.:641,0,1148:16,14,11,7 +chrX 1932289 . G A 1142 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=21.31;BaseQRankSum=2.416;DP=120;ExcessHet=0.0000;FS=7.527;MQ=60.00;MQRankSum=0;QD=21.31;ReadPosRankSum=-0.626;SOR=0.693;VarDP=55 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:99:62:.:.:0,148 0|1:25,30:55:99:.:0|1:1932289_G_A:1172,0,959:1932289:16,9,13,17 +chrX 1932293 . A C 1133 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=21.15;BaseQRankSum=1.727;DP=118;ExcessHet=0.0000;FS=7.527;MQ=60.00;MQRankSum=0;QD=21.15;ReadPosRankSum=-0.516;SOR=0.693;VarDP=55 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:99:62:.:.:0,148 0|1:25,30:55:99:.:0|1:1932289_G_A:1163,0,959:1932289:16,9,13,17 +chrX 1932355 . T C 946 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=7.81;BaseQRankSum=1.328;DP=132;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=7.81;ReadPosRankSum=0.812;SOR=0.722;VarDP=125 GT:AD:DP:GQ:PL:SB 1:29,33:62:99:184,0:18,11,18,15 0/1:33,30:63:99:792,0,868:16,17,17,13 +chrX 1932424 . G T 603 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=10.91;BaseQRankSum=-2.393;DP=128;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=10.91;ReadPosRankSum=-1.304;SOR=0.710;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:99:68:0,129 0/1:33,25:58:99:.:633,0,962:17,16,13,12 +chrX 1933035 . CA C,CAA,CAAA 222.97 . AC=0,1,0;AF=0.00,0.333,0.00;AN=3;AS_AltDP=10,11,4;AS_QD=0.00,21.83,3.80;BaseQRankSum=-0.344;DP=110;ExcessHet=0.0000;FS=0.000;MQ=59.34;MQRankSum=0;QD=10.08;ReadPosRankSum=-0.302;SOR=0.544;VarDP=26 GT:AD:DP:GQ:MIN_DP:PL:SB 2:1,10,11,4:26:99:.:262,369,0,243:1,0,16,9 0/0:.:44:0:44:0,0,943,0,943,943,0,943,943,943 +chrX 1933691 . CA C 537.97 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=24.04;DP=85;ExcessHet=0.0000;FS=0.000;MQ=58.17;QD=24.04;SOR=1.051;VarDP=24 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,24:24:99:.:577,0:0,0,14,10 0/0:.:48:0:48:0,0,1052 +chrX 1934169 . G C 46 . AC=1;AF=0.333;AN=3;AS_AltDP=41;AS_QD=1.00;BaseQRankSum=-2.641;DP=120;ExcessHet=0.0000;FS=0.872;MQ=60.00;MQRankSum=0;QD=1.00;ReadPosRankSum=-0.031;SOR=0.798;VarDP=76 GT:AD:DP:GQ:MIN_DP:PL:SB 1:35,41:76:76:.:76,0:17,18,22,19 0/0:.:46:46:42:0,46,943 +chrX 1934344 . A G 357 . AC=1;AF=0.333;AN=3;AS_AltDP=41;AS_QD=5.53;BaseQRankSum=0.765;DP=114;ExcessHet=0.0000;FS=0.912;MQ=60.00;MQRankSum=0;QD=5.53;ReadPosRankSum=0.596;SOR=0.556;VarDP=70 GT:AD:DP:GQ:MIN_DP:PL:SB 1:29,41:70:99:.:387,0:13,16,20,21 0/0:.:46:46:42:0,46,943 +chrX 1934548 . T C 853 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=7.01;BaseQRankSum=0.054;DP=133;ExcessHet=0.0000;FS=14.964;MQ=60.00;MQRankSum=0;QD=7.01;ReadPosRankSum=0.972;SOR=0.811;VarDP=126 GT:AD:DP:GQ:PL:SB 1:28,39:67:99:312,0:10,18,20,19 0/1:36,23:59:99:571,0,994:14,22,16,7 +chrX 1934930 . A G 405 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=11.76;BaseQRankSum=0.334;DP=84;ExcessHet=0.0000;FS=4.815;MQ=60.00;MQRankSum=0;QD=11.76;ReadPosRankSum=0.79;SOR=0.627;VarDP=37 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:48:39:44:0,39 0/1:19,18:37:99:.:435,0,490:12,7,8,10 +chrX 1935080 . A AGGAG 793.97 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=24.50;BaseQRankSum=-0.185;DP=80;ExcessHet=0.0000;FS=2.646;MQ=60.00;MQRankSum=0;QD=24.50;ReadPosRankSum=0.372;SOR=2.066;VarDP=34 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:48:39:44:0,39 0/1:13,21:34:99:.:833,0,483:11,2,20,1 +chrX 1935397 . G T 733 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=6.20;BaseQRankSum=1.376;DP=126;ExcessHet=0.0000;FS=0.668;MQ=60.00;MQRankSum=0;QD=6.20;ReadPosRankSum=0.578;SOR=0.670;VarDP=123 GT:AD:DP:GQ:PL:SB 1:31,31:62:73:73,0:16,15,18,13 0/1:33,28:61:99:690,0,867:15,18,12,16 +chrX 1936517 . G A 589 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=12.38;BaseQRankSum=-0.637;DP=115;ExcessHet=0.0000;FS=6.180;MQ=59.81;MQRankSum=0.963;QD=12.38;ReadPosRankSum=1.451;SOR=1.680;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,129 0/1:27,23:50:99:.:619,0,768:15,12,17,6 +chrX 1936553 . C CTT 707.97 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=16.60;BaseQRankSum=0.423;DP=112;ExcessHet=0.0000;FS=16.049;MQ=59.76;MQRankSum=0.573;QD=16.60;ReadPosRankSum=0.602;SOR=1.340;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:54:17:54:0,17 0/1:15,30:45:99:.:747,0,329:4,11,20,10 +chrX 1936889 . T C 1310 . AC=2;AF=0.667;AN=3;AS_AltDP=78;AS_QD=9.93;BaseQRankSum=0.305;DP=142;ExcessHet=0.0000;FS=5.362;MQ=60.00;MQRankSum=0;QD=9.93;ReadPosRankSum=-0.358;SOR=0.359;VarDP=135 GT:AD:DP:GQ:PL:SB 1:29,35:64:99:186,0:14,15,15,20 0/1:28,43:71:99:1154,0,665:7,21,22,21 +chrX 1936995 . G A 1261 . AC=2;AF=0.667;AN=3;AS_AltDP=77;AS_QD=10.17;BaseQRankSum=-0.23;DP=130;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=10.17;ReadPosRankSum=0.711;SOR=0.666;VarDP=127 GT:AD:DP:GQ:PL:SB 1:28,36:64:99:231,0:13,15,20,16 0/1:22,41:63:99:1060,0,521:10,12,16,25 +chrX 1937298 . G T 803 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=7.86;BaseQRankSum=3.018;DP=112;ExcessHet=0.0000;FS=0.726;MQ=59.68;MQRankSum=0.917;QD=7.86;ReadPosRankSum=-0.119;SOR=0.636;VarDP=106 GT:AD:DP:GQ:PL:SB 1:24,27:51:99:185,0:9,15,12,15 0/1:31,24:55:99:648,0,892:17,14,14,10 +chrX 1937453 . G A 1556 . AC=2;AF=0.667;AN=3;AS_AltDP=68;AS_QD=14.96;BaseQRankSum=-1.382;DP=108;ExcessHet=0.0000;FS=6.467;MQ=59.95;MQRankSum=0.729;QD=14.96;ReadPosRankSum=0.879;SOR=0.532;VarDP=106 GT:AD:DP:GQ:PL:SB 1:12,29:41:99:538,0:10,2,14,15 0/1:26,39:65:99:1048,0,706:13,13,18,21 +chrX 1938120 . A T 1094 . AC=2;AF=0.667;AN=3;AS_AltDP=65;AS_QD=9.53;BaseQRankSum=-0.117;DP=119;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=9.53;ReadPosRankSum=0.303;SOR=0.681;VarDP=118 GT:AD:DP:GQ:PL:SB 1:23,35:58:99:354,0:14,9,21,14 0/1:30,30:60:99:770,0,802:18,12,18,12 +chrX 1938233 . T C 995 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=14.24;BaseQRankSum=-0.287;DP=137;ExcessHet=0.0000;FS=3.195;MQ=60.00;MQRankSum=0;QD=14.24;ReadPosRankSum=-2.685;SOR=0.758;VarDP=72 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,149 0/1:34,38:72:99:.:1025,0,890:15,19,21,17 +chrX 1939670 . T C 591 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=15.15;BaseQRankSum=-0.435;DP=107;ExcessHet=0.0000;FS=2.731;MQ=60.00;MQRankSum=0;QD=15.15;ReadPosRankSum=1.898;SOR=1.179;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,149 0/1:19,22:41:99:.:621,0,527:8,11,7,15 +chrX 1939691 . T C 525 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=13.88;BaseQRankSum=-0.563;DP=103;ExcessHet=0.0000;FS=1.264;MQ=60.00;MQRankSum=0;QD=13.88;ReadPosRankSum=2.517;SOR=1.140;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,149 0/1:20,20:40:99:.:555,0,565:9,11,7,13 +chrX 1939720 . A G 739 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=17.48;BaseQRankSum=1.248;DP=110;ExcessHet=0.0000;FS=1.192;MQ=60.00;MQRankSum=0;QD=17.48;ReadPosRankSum=-1.302;SOR=0.465;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,149 0/1:18,26:44:99:.:769,0,466:11,7,14,12 +chrX 1940154 . T C 906 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=7.43;BaseQRankSum=1.741;DP=128;ExcessHet=0.0000;FS=4.302;MQ=60.00;MQRankSum=0;QD=7.43;ReadPosRankSum=0.881;SOR=0.466;VarDP=126 GT:AD:DP:GQ:PL:SB 1:28,34:62:99:279,0:15,13,17,17 0/1:39,25:64:99:657,0,1073:13,26,13,12 +chrX 1940283 . A G 747 . AC=2;AF=0.667;AN=3;AS_AltDP=64;AS_QD=5.89;BaseQRankSum=2.471;DP=136;ExcessHet=0.0000;FS=1.365;MQ=60.00;MQRankSum=0;QD=5.89;ReadPosRankSum=0.766;SOR=0.826;VarDP=132 GT:AD:DP:GQ:PL:SB 1:36,35:71:36:36,0:19,17,18,17 0/1:32,29:61:99:741,0,840:16,16,17,12 +chrX 1940816 . C T 1008 . AC=2;AF=0.667;AN=3;AS_AltDP=68;AS_QD=7.92;BaseQRankSum=1.46;DP=132;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=7.92;ReadPosRankSum=1.176;SOR=0.711;VarDP=131 GT:AD:DP:GQ:PL:SB 1:29,31:60:99:125,0:14,15,16,15 0/1:34,37:71:99:913,0,895:20,14,21,16 +chrX 1940865 . T C 814 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=13.84;BaseQRankSum=-0.492;DP=131;ExcessHet=0.0000;FS=0.975;MQ=60.00;MQRankSum=0;QD=13.84;ReadPosRankSum=1.387;SOR=0.518;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,202 0/1:29,32:61:99:.:844,0,816:16,13,16,16 +chrX 1941073 . A ATT 543.97 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=14.58;BaseQRankSum=-1.106;DP=117;ExcessHet=0.0000;FS=0.000;MQ=59.78;MQRankSum=1.101;QD=14.58;ReadPosRankSum=0.65;SOR=0.859;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,202 0/1:19,21:40:99:.:583,0,557:8,11,8,13 +chrX 1941292 . A G 907 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=17.04;BaseQRankSum=-0.782;DP=123;ExcessHet=0.0000;FS=12.128;MQ=59.53;MQRankSum=-1.911;QD=17.04;ReadPosRankSum=-1.37;SOR=0.570;VarDP=55 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:67:99:67:.:.:0,202 0|1:30,25:55:99:.:0|1:1941292_A_G:937,0,1151:1941292:9,21,14,11 +chrX 1941296 . A G 907 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=17.04;BaseQRankSum=1.213;DP=123;ExcessHet=0.0000;FS=12.128;MQ=59.53;MQRankSum=-1.911;QD=17.04;ReadPosRankSum=-1.565;SOR=0.570;VarDP=55 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:67:99:67:.:.:0,202 0|1:30,25:55:99:.:0|1:1941292_A_G:937,0,1151:1941292:9,21,14,11 +chrX 1941799 . G T 825 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=15.27;BaseQRankSum=1.058;DP=123;ExcessHet=0.0000;FS=2.274;MQ=60.00;MQRankSum=0;QD=15.27;ReadPosRankSum=0.855;SOR=0.877;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,202 0/1:26,30:56:99:.:855,0,695:12,14,17,13 +chrX 1941904 . T C 709 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=14.49;BaseQRankSum=1.519;DP=120;ExcessHet=0.0000;FS=2.371;MQ=60.00;MQRankSum=0;QD=14.49;ReadPosRankSum=-1.416;SOR=0.811;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,202 0/1:24,27:51:99:.:739,0,611:11,13,15,12 +chrX 1941965 . T C 645 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=14.06;BaseQRankSum=-0.137;DP=116;ExcessHet=0.0000;FS=3.965;MQ=60.00;MQRankSum=0;QD=14.06;ReadPosRankSum=0.021;SOR=0.473;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,202 0/1:23,25:48:99:.:675,0,600:14,9,12,13 +chrX 1942009 . A G 824 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=14.00;BaseQRankSum=-0.34;DP=128;ExcessHet=0.0000;FS=0.000;MQ=59.91;MQRankSum=1.049;QD=14.00;ReadPosRankSum=1.616;SOR=0.756;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,202 0/1:30,31:61:99:.:854,0,829:15,15,15,16 +chrX 1942145 . C G 774 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=17.11;BaseQRankSum=1.897;DP=117;ExcessHet=0.0000;FS=6.121;MQ=59.44;MQRankSum=0.48;QD=17.11;ReadPosRankSum=0.706;SOR=1.093;VarDP=47 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:67:99:67:.:.:0,202 0|1:26,21:47:99:.:0|1:1942145_C_G:804,0,893:1942145:15,11,8,13 +chrX 1942152 . T G 783 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=18.48;BaseQRankSum=1.213;DP=112;ExcessHet=0.0000;FS=6.439;MQ=59.89;MQRankSum=-1.001;QD=18.48;ReadPosRankSum=0.207;SOR=1.052;VarDP=44 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:67:99:67:.:.:0,202 0|1:23,21:44:99:.:0|1:1942145_C_G:813,0,818:1942145:14,9,8,13 +chrX 1942193 . T C 707 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=13.65;BaseQRankSum=0.757;DP=122;ExcessHet=0.0000;FS=2.323;MQ=60.00;MQRankSum=0;QD=13.65;ReadPosRankSum=-0.061;SOR=1.057;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,202 0/1:27,27:54:99:.:737,0,701:14,13,11,16 +chrX 1942245 . T G 402 . AC=1;AF=0.333;AN=3;AS_AltDP=44;AS_QD=5.76;BaseQRankSum=-0.082;DP=143;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=5.76;ReadPosRankSum=-0.393;SOR=0.685;VarDP=75 GT:AD:DP:GQ:MIN_DP:PL:SB 1:31,44:75:99:.:432,0:14,17,20,24 0/0:.:63:99:63:0,120,1800 +chrX 1942272 . G A 985 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=13.72;BaseQRankSum=0.786;DP=143;ExcessHet=0.0000;FS=6.020;MQ=60.00;MQRankSum=0;QD=13.72;ReadPosRankSum=0.368;SOR=0.293;VarDP=74 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,794 0/1:36,38:74:99:.:1015,0,911:23,13,19,19 +chrX 1942503 . CAAAAAAAAAAAAAAAAA CAAAAAAAAAAAAAAA,C 359.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=6,11;AS_QD=2.27,10.97;BaseQRankSum=1.079;DP=63;ExcessHet=0.0000;FS=31.863;MQ=59.73;MQRankSum=0.878;QD=10.78;ReadPosRankSum=-1.242;SOR=3.356;VarDP=37 GT:AD:DP:GQ:PL:SB 1:3,6,0:9:59:59,0,150:2,1,6,0 0/2:17,0,11:28:99:340,389,1048,0,658,624:4,13,9,2 +chrX 1942825 . G C 1391 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=21.53;BaseQRankSum=-0.467;DP=143;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=21.53;ReadPosRankSum=1.295;SOR=0.654;VarDP=66 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:76:99:76:.:.:0,405 0|1:30,36:66:99:.:0|1:1942825_G_C:1421,0,1141:1942825:17,13,20,16 +chrX 1942829 . C G 1391 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=21.53;BaseQRankSum=1.365;DP=143;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=21.53;ReadPosRankSum=1.32;SOR=0.654;VarDP=66 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:76:99:76:.:.:0,405 0|1:30,36:66:99:.:0|1:1942825_G_C:1421,0,1141:1942825:17,13,20,16 +chrX 1943233 . C T 193 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=3.38;BaseQRankSum=-0.84;DP=139;ExcessHet=0.0000;FS=0.946;MQ=60.00;MQRankSum=0;QD=3.38;ReadPosRankSum=-0.233;SOR=0.905;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 1:29,37:66:99:.:223,0:14,15,16,21 0/0:.:69:85:69:0,85,1398 +chrX 1944414 . A C 547 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=13.11;BaseQRankSum=1.106;DP=99;ExcessHet=0.0000;FS=1.223;MQ=59.60;MQRankSum=0;QD=13.11;ReadPosRankSum=-0.549;SOR=0.845;VarDP=44 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:74:50:54:.:.:0,50 0|1:28,16:44:99:.:0|1:1944414_A_C:577,0,1126:1944414:13,15,9,7 +chrX 1944419 . C A 546 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=13.09;BaseQRankSum=1.987;DP=98;ExcessHet=0.0000;FS=1.223;MQ=60.00;MQRankSum=0;QD=13.09;ReadPosRankSum=-1.099;SOR=0.845;VarDP=44 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:74:50:54:.:.:0,50 0|1:28,16:44:99:.:0|1:1944414_A_C:576,0,1126:1944414:13,15,9,7 +chrX 1944579 . CA C 195.97 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=7.83;BaseQRankSum=0.725;DP=94;ExcessHet=0.0000;FS=5.469;MQ=59.58;MQRankSum=-1.002;QD=7.83;ReadPosRankSum=0.18;SOR=1.765;VarDP=30 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:74:50:54:0,50 0/1:16,14:30:99:.:235,0,295:8,8,10,4 +chrX 1944807 . C A 724 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=13.71;BaseQRankSum=0.803;DP=110;ExcessHet=0.0000;FS=5.572;MQ=60.00;MQRankSum=0;QD=13.71;ReadPosRankSum=-0.876;SOR=1.501;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:74:50:54:0,50 0/1:27,28:55:99:.:754,0,684:14,13,19,9 +chrX 1944863 . C T 734 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=11.75;BaseQRankSum=1.207;DP=120;ExcessHet=0.0000;FS=2.092;MQ=60.00;MQRankSum=0;QD=11.75;ReadPosRankSum=1.738;SOR=1.071;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:74:50:54:0,50 0/1:35,30:65:99:.:764,0,862:18,17,18,12 +chrX 1944949 . G A 760 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=11.79;BaseQRankSum=-0.576;DP=121;ExcessHet=0.0000;FS=0.000;MQ=59.84;MQRankSum=-1.048;QD=11.79;ReadPosRankSum=-0.497;SOR=0.649;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:74:50:54:0,50 0/1:36,31:67:99:.:790,0,976:17,19,15,16 +chrX 1945483 . CA C 192.97 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=5.16;BaseQRankSum=2.48;DP=108;ExcessHet=0.0000;FS=2.892;MQ=60.00;MQRankSum=0;QD=5.16;ReadPosRankSum=-0.625;SOR=1.307;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:74:50:54:0,50 0/1:30,15:45:99:.:232,0,653:18,12,11,4 +chrX 1945797 . T C 768 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=11.74;BaseQRankSum=-2.549;DP=125;ExcessHet=0.0000;FS=4.832;MQ=59.99;MQRankSum=-1.0;QD=11.74;ReadPosRankSum=-0.344;SOR=0.400;VarDP=68 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:74:50:54:0,50 0/1:35,33:68:99:.:798,0,958:13,22,17,16 +chrX 1946213 . G A 658 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=12.07;BaseQRankSum=0.734;DP=112;ExcessHet=0.0000;FS=1.012;MQ=60.00;MQRankSum=0;QD=12.07;ReadPosRankSum=0.633;SOR=0.796;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:74:50:54:0,50 0/1:31,26:57:99:.:688,0,847:15,16,14,12 +chrX 1946466 . TATAAA T 704.97 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=20.11;BaseQRankSum=-1.357;DP=94;ExcessHet=0.0000;FS=1.273;MQ=60.00;MQRankSum=0;QD=20.11;ReadPosRankSum=-0.958;SOR=1.022;VarDP=37 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:74:50:54:0,50 0/1:18,19:37:99:.:744,0,698:9,9,11,8 +chrX 1946549 . G A 735 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=19.62;BaseQRankSum=1.795;DP=93;ExcessHet=0.0000;FS=1.235;MQ=60.00;MQRankSum=0;QD=19.62;ReadPosRankSum=0.676;SOR=0.990;VarDP=39 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:74:50:54:.:.:0,50 0|1:18,21:39:99:.:0|1:1946549_G_A:765,0,592:1946549:9,9,9,12 +chrX 1946589 . A T 786 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=18.98;BaseQRankSum=0.31;DP=97;ExcessHet=0.0000;FS=2.704;MQ=59.61;MQRankSum=-0.977;QD=18.98;ReadPosRankSum=0.024;SOR=1.258;VarDP=43 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:74:50:54:.:.:0,50 0|1:22,21:43:99:.:0|1:1946549_G_A:816,0,861:1946549:10,12,7,14 +chrX 1946590 . T A 786 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=18.98;BaseQRankSum=0.019;DP=97;ExcessHet=0.0000;FS=2.704;MQ=59.61;MQRankSum=-0.977;QD=18.98;ReadPosRankSum=-0.078;SOR=1.258;VarDP=43 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:74:50:54:.:.:0,50 0|1:22,21:43:99:.:0|1:1946549_G_A:816,0,861:1946549:10,12,7,14 +chrX 1946627 . C T 719 . AC=1;AF=0.500;AN=2;AS_AltDP=22;AS_QD=15.60;BaseQRankSum=0.288;DP=104;ExcessHet=0.0000;FS=8.144;MQ=60.00;MQRankSum=0;QD=15.60;ReadPosRankSum=-1.273;SOR=1.558;VarDP=48 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB .:.:56:0:56:.:.:0,0 0|1:26,22:48:99:.:0|1:1946549_G_A:749,0,911:1946549:14,12,7,15 +chrX 1946859 . A AATATATTT 721.97 . AC=2;AF=0.667;AN=3;AS_AltDP=48;AS_QD=8.01;BaseQRankSum=0.419;DP=107;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=8.01;ReadPosRankSum=-0.263;SOR=0.733;VarDP=95 GT:AD:DP:GQ:PL:SB 1:28,29:57:21:21,0:16,12,15,14 0/1:19,19:38:99:740,0,721:8,11,10,9 +chrX 1947455 . A G 547 . AC=2;AF=0.667;AN=3;AS_AltDP=31;AS_QD=10.69;BaseQRankSum=-1.135;DP=56;ExcessHet=0.0000;FS=10.090;MQ=56.39;MQRankSum=-0.121;QD=10.69;ReadPosRankSum=-0.552;SOR=1.255;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:16,21:37:99:.:.:219,0:.:9,7,6,15 0|1:7,10:17:99:1|0:1947453_G_T:358,0,234:1947453:5,2,5,5 +chrX 1947457 . A G 544 . AC=2;AF=0.667;AN=3;AS_AltDP=31;AS_QD=10.44;BaseQRankSum=0.507;DP=56;ExcessHet=0.0000;FS=9.624;MQ=56.19;MQRankSum=0.212;QD=10.44;ReadPosRankSum=-1.148;SOR=1.281;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:16,21:37:99:.:.:219,0:.:9,7,6,15 0|1:8,10:18:99:1|0:1947453_G_T:355,0,256:1947453:5,3,5,5 +chrX 1947460 . TATATATATATATAC T 102.97 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=4.18;BaseQRankSum=-1.189;DP=51;ExcessHet=0.0000;FS=5.287;MQ=55.18;MQRankSum=-0.851;QD=4.18;ReadPosRankSum=-1.002;SOR=1.567;VarDP=34 GT:AD:DP:GQ:MIN_DP:PL:SB 1:15,19:34:99:.:142,0:8,7,6,13 0/0:.:16:30:16:0,30,450 +chrX 1947474 . CATATATATATAT *,C,TATATATATATAT 371 . AC=1,1,1;AF=0.333,0.333,0.333;AN=3;AS_AltDP=0,7,5;AS_QD=29.29,32.86,29.45;DP=51;ExcessHet=0.0000;FS=4.670;MQ=51.37;QD=33.42;SOR=1.349;VarDP=12 GT:AD:DP:GQ:PL:SB 1:15,19,0,0:34:99:142,0,817,817:8,7,6,13 2/3:0,0,7,5:12:99:401,398,484,171,198,177,192,283,0,341:0,0,5,7 +chrX 2137011 . CCAT C 266.97 . AC=1;AF=0.333;AN=3;AS_AltDP=9;AS_QD=9.27;BaseQRankSum=1.319;DP=41;ExcessHet=0.0000;FS=3.715;MQ=60.00;MQRankSum=0;QD=9.27;ReadPosRankSum=0.385;SOR=0.542;VarDP=33 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:35:1:0,35 0/1:24,9:33:99:.:306,0,977:8,16,5,4 +chrX 2137054 . T C 337 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=10.49;BaseQRankSum=1.406;DP=42;ExcessHet=0.0000;FS=14.508;MQ=60.00;MQRankSum=0;QD=10.49;ReadPosRankSum=-1.692;SOR=2.070;VarDP=35 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:35:1:0,35 0/1:22,13:35:99:.:367,0,590:8,14,10,3 +chrX 2137069 . TACCATCATCATCACCATCCTC T 367.97 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=8.48;BaseQRankSum=-1.171;DP=92;ExcessHet=0.0000;FS=0.000;MQ=59.90;MQRankSum=-0.767;QD=8.48;ReadPosRankSum=0.317;SOR=0.880;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 1:19,29:48:99:.:407,0:8,11,11,18 0/0:.:38:51:33:0,51,818 +chrX 2137121 . T TCCC,TCTCCCATCATCATCACGATCACCATCTTTATTACCTCCC,TCCCCCATCATCATCATCACCATCACCATCTTCATTACCTCTCCCATCATCATCACGATCACCATCTTTATTACCTCCC 1032.97 . AC=1,0,0;AF=0.333,0.00,0.00;AN=3;AS_AltDP=3,0,0;AS_QD=31.06,30.99,29.66;BaseQRankSum=-1.098;DP=83;ExcessHet=0.0000;FS=2.392;MQ=56.56;MQRankSum=-2.006;QD=63.06;ReadPosRankSum=0;SOR=1.049;VarDP=17 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:37:99:37:0,180,180,180 0/1:14,3,0,0:17:99:.:1072,0,469,496,532,1012,123,491,632,597:8,6,1,2 +chrX 2137273 . G C 505 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=19.11;BaseQRankSum=-0.247;DP=67;ExcessHet=0.0000;FS=1.720;MQ=53.81;MQRankSum=-1.309;QD=19.11;ReadPosRankSum=0.504;SOR=0.407;VarDP=28 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:37:99:37:0,180 0/1:6,22:28:75:.:535,0,75:4,2,12,10 +chrX 2137766 . T TATC 803.97 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=20.07;BaseQRankSum=0.981;DP=100;ExcessHet=0.0000;FS=2.587;MQ=59.46;MQRankSum=0;QD=20.07;ReadPosRankSum=-2.004;SOR=0.392;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:57:70:57:0,70 0/1:20,22:42:99:.:843,0,752:8,12,11,11 +chrX 2138063 . AT A 620.97 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=17.37;BaseQRankSum=-0.673;DP=98;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=17.37;ReadPosRankSum=1.278;SOR=0.675;VarDP=38 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:57:70:57:0,70 0/1:17,21:38:99:.:660,0,512:8,9,10,11 +chrX 2138110 . T C 881 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=18.59;BaseQRankSum=0.541;DP=107;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=18.59;ReadPosRankSum=-0.981;SOR=0.880;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:57:70:57:0,70 0/1:16,33:49:99:.:911,0,329:8,8,18,15 +chrX 2138309 . A T 794 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=14.21;BaseQRankSum=0.807;DP=117;ExcessHet=0.0000;FS=6.937;MQ=60.00;MQRankSum=0;QD=14.21;ReadPosRankSum=1.401;SOR=0.741;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:57:70:57:0,70 0/1:28,30:58:99:.:824,0,747:17,11,13,17 +chrX 2138510 . C T 768 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=13.76;BaseQRankSum=-0.635;DP=116;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.76;ReadPosRankSum=1.24;SOR=0.693;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:57:70:57:0,70 0/1:27,31:58:99:.:798,0,703:14,13,15,16 +chrX 2138596 . T G 652 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=15.50;BaseQRankSum=-1.274;DP=103;ExcessHet=0.0000;FS=4.404;MQ=60.00;MQRankSum=0;QD=15.50;ReadPosRankSum=-0.165;SOR=1.180;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:57:70:57:0,70 0/1:20,24:44:99:.:682,0,563:11,9,9,15 +chrX 2138651 . C A 472 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=15.21;BaseQRankSum=2.258;DP=92;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=15.21;ReadPosRankSum=-0.036;SOR=0.582;VarDP=33 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:57:70:57:0,70 0/1:15,18:33:99:.:502,0,348:8,7,9,9 +chrX 2138698 . GC G 77.97 . AC=1;AF=0.500;AN=2;AS_AltDP=6;AS_QD=6.88;BaseQRankSum=2.105;DP=44;ExcessHet=0.0000;FS=2.884;MQ=60.00;MQRankSum=0;QD=6.88;ReadPosRankSum=0.708;SOR=2.368;VarDP=17 GT:AD:DP:GQ:MIN_DP:PL:SB .:.:25:0:25:0,0 0/1:11,6:17:84:.:117,0,84:3,8,0,6 +chrX 2139237 . T G 972 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=17.28;BaseQRankSum=-0.332;DP=120;ExcessHet=0.0000;FS=7.664;MQ=60.00;MQRankSum=0;QD=17.28;ReadPosRankSum=-1.371;SOR=0.190;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,224 0/1:22,36:58:99:.:1002,0,561:6,16,17,19 +chrX 2139338 . G A 757 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=15.74;BaseQRankSum=0.229;DP=115;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=15.74;ReadPosRankSum=-0.919;SOR=0.765;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,224 0/1:22,28:50:99:.:787,0,594:9,13,11,17 +chrX 2139429 . GCCAT G 1280.97 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=25.88;BaseQRankSum=1.824;DP=120;ExcessHet=0.0000;FS=4.197;MQ=60.00;MQRankSum=0;QD=25.88;ReadPosRankSum=-0.864;SOR=0.281;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,224 0/1:18,33:51:99:.:1320,0,635:12,6,17,16 +chrX 2139600 . T C 514 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=16.00;BaseQRankSum=0.344;DP=108;ExcessHet=0.0000;FS=1.377;MQ=60.00;MQRankSum=0;QD=16.00;ReadPosRankSum=0.648;SOR=0.715;VarDP=34 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,224 0/1:14,20:34:99:.:544,0,335:6,8,11,9 +chrX 2139987 . C T 764 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=12.60;BaseQRankSum=-0.637;DP=134;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=12.60;ReadPosRankSum=-0.502;SOR=0.756;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,224 0/1:32,31:63:99:.:794,0,849:16,16,15,16 +chrX 2140130 . T G 1028 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=17.63;BaseQRankSum=-0.085;DP=123;ExcessHet=0.0000;FS=11.118;MQ=60.00;MQRankSum=0;QD=17.63;ReadPosRankSum=-0.022;SOR=1.245;VarDP=60 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:99:62:.:.:0,224 0|1:32,28:60:99:.:0|1:2140130_T_G:1058,0,1218:2140130:13,19,18,10 +chrX 2140131 . C T 1028 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=17.63;BaseQRankSum=0.226;DP=124;ExcessHet=0.0000;FS=11.118;MQ=60.00;MQRankSum=0;QD=17.63;ReadPosRankSum=0.022;SOR=1.245;VarDP=60 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:99:62:.:.:0,224 0|1:32,28:60:99:.:0|1:2140130_T_G:1058,0,1218:2140130:13,19,18,10 +chrX 2140261 . G T 780 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=13.97;BaseQRankSum=0.417;DP=120;ExcessHet=0.0000;FS=1.042;MQ=60.00;MQRankSum=0;QD=13.97;ReadPosRankSum=-1.087;SOR=0.489;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,224 0/1:26,32:58:99:.:810,0,617:9,17,13,19 +chrX 2140622 . T C 1061 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=24.24;BaseQRankSum=0.279;DP=107;ExcessHet=0.0000;FS=6.901;MQ=60.00;MQRankSum=0;QD=24.24;ReadPosRankSum=0.024;SOR=0.156;VarDP=45 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:99:62:.:.:0,224 0|1:16,29:45:99:.:0|1:2140622_T_C:1091,0,544:2140622:12,4,15,14 +chrX 2140640 . A C 1074 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=25.09;BaseQRankSum=-1.52;DP=107;ExcessHet=0.0000;FS=1.263;MQ=60.00;MQRankSum=0;QD=25.09;ReadPosRankSum=-0.381;SOR=0.451;VarDP=44 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:99:62:.:.:0,224 0|1:15,29:44:99:.:0|1:2140622_T_C:1104,0,532:2140622:10,5,17,12 +chrX 2141084 . T C 739 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=13.26;BaseQRankSum=0.317;DP=125;ExcessHet=0.0000;FS=5.364;MQ=60.00;MQRankSum=0;QD=13.26;ReadPosRankSum=-0.179;SOR=0.510;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,224 0/1:30,28:58:99:.:769,0,828:11,19,15,13 +chrX 2141131 . G A 729 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=13.09;BaseQRankSum=0.629;DP=122;ExcessHet=0.0000;FS=7.247;MQ=60.00;MQRankSum=0;QD=13.09;ReadPosRankSum=-1.891;SOR=1.000;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,224 0/1:30,28:58:99:.:759,0,793:12,18,17,11 +chrX 2141228 . AAGATAGAT A,AAGAT 1077.97 . AC=1,0;AF=0.333,0.00;AN=3;AS_AltDP=27,24;AS_QD=30.74,31.31;DP=128;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=21.90;SOR=0.900;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,27,24:51:65:.:1117,0,65:0,0,23,28 0/0:.:62:96:62:0,96,1440,96,1440,1440 +chrX 2141256 . TA T 1173.97 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=22.46;BaseQRankSum=0.546;DP=117;ExcessHet=0.0000;FS=5.795;MQ=59.88;MQRankSum=-0.76;QD=22.46;ReadPosRankSum=0.417;SOR=0.340;VarDP=54 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:61:99:61:.:.:0,1192 0|1:21,33:54:99:.:0|1:2141256_TA_T:1213,0,724:2141256:7,14,17,16 +chrX 2141258 . GATAGATAGATA G 1169.97 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=21.98;BaseQRankSum=0.034;DP=117;ExcessHet=0.0000;FS=3.900;MQ=59.88;MQRankSum=-0.779;QD=21.98;ReadPosRankSum=0.248;SOR=0.393;VarDP=55 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:61:99:61:.:.:0,1192 0|1:22,33:55:99:.:0|1:2141256_TA_T:1209,0,755:2141256:8,14,17,16 +chrX 2141493 . T C 790 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=14.64;BaseQRankSum=0.564;DP=122;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.64;ReadPosRankSum=1.797;SOR=0.826;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,1192 0/1:27,29:56:99:.:820,0,740:13,14,13,16 +chrX 2141543 . T C 805 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=13.05;BaseQRankSum=-0.591;DP=126;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.05;ReadPosRankSum=-1.626;SOR=0.693;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,1192 0/1:32,32:64:99:.:835,0,860:16,16,16,16 +chrX 2141732 . C G 448 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=9.02;BaseQRankSum=0.63;DP=116;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=9.02;ReadPosRankSum=0.473;SOR=0.782;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,1192 0/1:32,21:53:99:.:478,0,800:13,19,8,13 +chrX 2142078 . C A 545 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=11.50;BaseQRankSum=1.415;DP=113;ExcessHet=0.0000;FS=1.064;MQ=60.00;MQRankSum=0;QD=11.50;ReadPosRankSum=-1.223;SOR=0.874;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,1192 0/1:28,22:50:99:.:575,0,708:14,14,10,12 +chrX 2142190 . T C 590 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=12.92;BaseQRankSum=0.228;DP=110;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=12.92;ReadPosRankSum=-0.268;SOR=0.541;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,1192 0/1:24,24:48:99:.:620,0,641:8,16,9,15 +chrX 2142219 . A G 508 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=12.23;BaseQRankSum=1.425;DP=109;ExcessHet=0.0000;FS=1.210;MQ=60.00;MQRankSum=0;QD=12.23;ReadPosRankSum=0.932;SOR=0.460;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,1192 0/1:24,20:44:99:.:538,0,652:8,16,8,12 +chrX 2142316 . A G 681 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=17.34;BaseQRankSum=1.111;DP=104;ExcessHet=0.0000;FS=6.684;MQ=60.00;MQRankSum=0;QD=17.34;ReadPosRankSum=-0.068;SOR=1.148;VarDP=41 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:61:99:61:.:.:0,1192 0|1:22,19:41:99:.:0|1:2142316_A_G:711,0,856:2142316:9,13,12,7 +chrX 2142326 . A G 644 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=16.05;BaseQRankSum=0.646;DP=107;ExcessHet=0.0000;FS=6.740;MQ=60.00;MQRankSum=0;QD=16.05;ReadPosRankSum=0.776;SOR=0.971;VarDP=42 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:61:99:61:.:.:0,1192 0|1:24,18:42:99:.:0|1:2142316_A_G:674,0,897:2142316:9,15,11,7 +chrX 2142937 . GCA G 877.97 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=16.98;BaseQRankSum=0.917;DP=115;ExcessHet=0.0000;FS=3.855;MQ=59.25;MQRankSum=-1.569;QD=16.98;ReadPosRankSum=-1.001;SOR=0.902;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,1192 0/1:30,24:54:99:.:917,0,1182:13,17,14,10 +chrX 2143100 . A G 684 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=15.52;BaseQRankSum=-1.025;DP=107;ExcessHet=0.0000;FS=5.972;MQ=59.94;MQRankSum=-1.047;QD=15.52;ReadPosRankSum=-1.65;SOR=1.118;VarDP=46 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:61:99:61:.:.:0,1192 0|1:25,21:46:99:.:0|1:2143100_A_G:714,0,945:2143100:14,11,8,13 +chrX 2143129 . T G 478 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=11.81;BaseQRankSum=0.552;DP=105;ExcessHet=0.0000;FS=0.000;MQ=58.51;MQRankSum=-1.744;QD=11.81;ReadPosRankSum=0.068;SOR=0.646;VarDP=43 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:61:99:61:.:.:0,1192 0|1:28,15:43:99:.:0|1:2143100_A_G:508,0,1048:2143100:17,11,9,6 +chrX 2143413 . G A 1115 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=17.35;BaseQRankSum=2.412;DP=127;ExcessHet=0.0000;FS=0.000;MQ=59.85;MQRankSum=-1.032;QD=17.35;ReadPosRankSum=-2.307;SOR=0.713;VarDP=66 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:61:99:61:.:.:0,1192 0|1:35,31:66:99:.:0|1:2143413_G_A:1145,0,1315:2143413:16,19,14,17 +chrX 2143435 . C T 1092 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=16.75;BaseQRankSum=0;DP=131;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=16.75;ReadPosRankSum=-1.492;SOR=0.792;VarDP=67 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:61:99:61:.:.:0,1192 0|1:36,31:67:99:.:0|1:2143413_G_A:1122,0,1336:2143413:16,20,13,18 +chrX 2143493 . T C 825 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=13.36;BaseQRankSum=-0.067;DP=125;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.36;ReadPosRankSum=0.732;SOR=0.704;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,1192 0/1:33,31:64:99:.:855,0,924:18,15,17,14 +chrX 2143564 . G A 735 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=12.54;BaseQRankSum=-0.115;DP=124;ExcessHet=0.0000;FS=0.000;MQ=59.90;MQRankSum=-1.018;QD=12.54;ReadPosRankSum=-0.614;SOR=0.641;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,1192 0/1:32,29:61:99:.:765,0,854:15,17,14,15 +chrX 2143635 . T C 583 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=10.22;BaseQRankSum=-0.43;DP=122;ExcessHet=0.0000;FS=3.736;MQ=60.00;MQRankSum=0;QD=10.22;ReadPosRankSum=0.135;SOR=1.358;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,1192 0/1:35,25:60:99:.:613,0,986:16,19,8,17 +chrX 2143707 . CAAG C 749.97 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=15.17;BaseQRankSum=0.637;DP=117;ExcessHet=0.0000;FS=10.128;MQ=59.77;MQRankSum=-1.176;QD=15.17;ReadPosRankSum=0.795;SOR=1.401;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,1192 0/1:31,21:52:99:.:789,0,1238:18,13,7,14 +chrX 2143780 . G GTATATATATATATATATATATATA,GTATATATATATATATATATATA 433.97 . AC=1,0;AF=0.333,0.00;AN=3;AS_AltDP=11,2;AS_QD=12.13,4.17;BaseQRankSum=0.878;DP=108;ExcessHet=0.0000;FS=10.778;MQ=57.51;MQRankSum=-3.805;QD=11.54;ReadPosRankSum=-0.308;SOR=2.584;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,1192,1192 0/1:28,11,2:41:99:.:473,0,1123,348,1098,1495:15,13,11,2 +chrX 2143798 . GTA G,ATA 676 . AC=1,0;AF=0.333,0.00;AN=3;AS_AltDP=19,2;AS_QD=13.32,0.75;BaseQRankSum=0.967;DP=117;ExcessHet=0.0000;FS=6.048;MQ=57.92;MQRankSum=-3.249;QD=12.84;ReadPosRankSum=-0.968;SOR=1.628;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,1192,1192 0/1:34,19,2:55:99:.:706,0,1386,679,1347,2075:20,14,16,5 +chrX 2144078 . C G 3849 . AC=3;AF=1.00;AN=3;AS_AltDP=120;AS_QD=32.33;DP=125;ExcessHet=0.0000;FS=0.000;MQ=59.96;QD=32.33;SOR=0.693;VarDP=120 GT:AD:DP:GQ:PL:SB 1:0,63:63:99:2024,0:0,0,28,35 1/1:0,57:57:99:1855,171,0:0,0,32,25 +chrX 2144263 . T C 1131 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=18.14;BaseQRankSum=0.222;DP=130;ExcessHet=0.0000;FS=3.486;MQ=60.00;MQRankSum=0;QD=18.14;ReadPosRankSum=-0.426;SOR=0.332;VarDP=64 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:99:63:.:.:0,1240 0|1:33,31:64:99:.:0|1:2144263_T_C:1161,0,1270:2144263:21,12,16,15 +chrX 2144266 . T C 1131 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=18.14;BaseQRankSum=1.334;DP=128;ExcessHet=0.0000;FS=3.486;MQ=60.00;MQRankSum=0;QD=18.14;ReadPosRankSum=-0.578;SOR=0.332;VarDP=64 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:99:63:.:.:0,1240 0|1:33,31:64:99:.:0|1:2144263_T_C:1161,0,1270:2144263:21,12,16,15 +chrX 2144365 . T C 647 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=12.54;BaseQRankSum=0.55;DP=118;ExcessHet=0.0000;FS=1.055;MQ=60.00;MQRankSum=0;QD=12.54;ReadPosRankSum=1.345;SOR=0.473;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,1240 0/1:29,25:54:99:.:677,0,796:17,12,13,12 +chrX 2144409 . C T 818 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=12.85;BaseQRankSum=-1.043;DP=131;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=12.85;ReadPosRankSum=-0.609;SOR=0.816;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,1240 0/1:33,33:66:99:.:848,0,873:15,18,14,19 +chrX 2144533 . T C 854 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=13.39;BaseQRankSum=-1.924;DP=131;ExcessHet=0.0000;FS=2.058;MQ=60.00;MQRankSum=0;QD=13.39;ReadPosRankSum=0.058;SOR=0.856;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,1240 0/1:32,34:66:99:.:884,0,869:15,17,19,15 +chrX 2145043 . A G 927 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=15.95;BaseQRankSum=0.777;DP=124;ExcessHet=0.0000;FS=3.617;MQ=60.00;MQRankSum=0;QD=15.95;ReadPosRankSum=0.418;SOR=0.997;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,1240 0/1:26,34:60:99:.:957,0,669:12,14,20,14 +chrX 2146278 . A G 762 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=15.23;BaseQRankSum=0.467;DP=120;ExcessHet=0.0000;FS=11.392;MQ=60.00;MQRankSum=0;QD=15.23;ReadPosRankSum=0.756;SOR=2.399;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,1240 0/1:23,29:52:99:.:792,0,582:11,12,6,23 +chrX 2146597 . A G 2181 . AC=2;AF=0.667;AN=3;AS_AltDP=75;AS_QD=21.06;BaseQRankSum=-3.142;DP=105;ExcessHet=0.0000;FS=1.725;MQ=60.00;MQRankSum=0;QD=21.06;ReadPosRankSum=-0.367;SOR=0.892;VarDP=105 GT:AD:DP:GQ:PL:SB 1:0,55:55:99:1756,0:0,0,29,26 0/1:30,20:50:99:455,0,894:15,15,12,8 +chrX 2146970 . T TG 204.97 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=15.25;BaseQRankSum=0;DP=95;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=15.25;ReadPosRankSum=2.041;SOR=1.609;VarDP=16 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,586 0/1:5,11:16:90:.:244,0,90:5,0,11,0 +chrX 2148424 . G A 641 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=11.98;BaseQRankSum=0.449;DP=123;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=11.98;ReadPosRankSum=1.336;SOR=0.716;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,586 0/1:31,25:56:99:.:671,0,859:15,16,13,12 +chrX 2148635 . T C 977 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=16.78;BaseQRankSum=1.873;DP=125;ExcessHet=0.0000;FS=3.652;MQ=60.00;MQRankSum=0;QD=16.78;ReadPosRankSum=-0.58;SOR=0.345;VarDP=60 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:64:99:64:.:.:0,586 0|1:33,27:60:99:.:0|1:2148635_T_C:1007,0,1292:2148635:11,22,12,15 +chrX 2148636 . C T 977 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=16.78;BaseQRankSum=-0.228;DP=125;ExcessHet=0.0000;FS=3.652;MQ=60.00;MQRankSum=0;QD=16.78;ReadPosRankSum=-0.275;SOR=0.345;VarDP=60 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:64:99:64:.:.:0,586 0|1:33,27:60:99:.:0|1:2148635_T_C:1007,0,1292:2148635:11,22,12,15 +chrX 2148666 . G A 922 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=15.35;BaseQRankSum=1.602;DP=128;ExcessHet=0.0000;FS=3.512;MQ=60.00;MQRankSum=0;QD=15.35;ReadPosRankSum=0.093;SOR=0.374;VarDP=62 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:64:99:64:.:.:0,586 0|1:36,26:62:99:.:0|1:2148666_G_A:952,0,1411:2148666:13,23,12,14 +chrX 2148675 . A C 935 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=15.82;BaseQRankSum=-0.334;DP=126;ExcessHet=0.0000;FS=1.009;MQ=59.91;MQRankSum=0;QD=15.82;ReadPosRankSum=-0.468;SOR=0.506;VarDP=61 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:64:99:64:.:.:0,586 0|1:35,26:61:99:.:0|1:2148666_G_A:965,0,1380:2148666:13,22,11,15 +chrX 2149142 . C T 605 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=16.71;BaseQRankSum=-0.622;DP=105;ExcessHet=0.0000;FS=1.303;MQ=60.00;MQRankSum=0;QD=16.71;ReadPosRankSum=-1.12;SOR=0.880;VarDP=38 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,586 0/1:15,23:38:99:.:635,0,387:8,7,10,13 +chrX 2149307 . G A 528 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=12.13;BaseQRankSum=2.902;DP=111;ExcessHet=0.0000;FS=8.659;MQ=60.00;MQRankSum=0;QD=12.13;ReadPosRankSum=0.754;SOR=1.247;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,586 0/1:26,20:46:99:.:558,0,631:16,10,7,13 +chrX 2149493 . A C 721 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=14.73;BaseQRankSum=1.485;DP=115;ExcessHet=0.0000;FS=7.859;MQ=60.00;MQRankSum=0;QD=14.73;ReadPosRankSum=-0.726;SOR=1.356;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,586 0/1:25,26:51:99:.:751,0,666:11,14,17,9 +chrX 2149900 . T C 695 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=14.22;BaseQRankSum=-1.612;DP=117;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.22;ReadPosRankSum=0.942;SOR=0.596;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,586 0/1:22,29:51:99:.:725,0,568:12,10,15,14 +chrX 2150826 . AT A 3605.97 . AC=2;AF=0.667;AN=3;AS_AltDP=86;AS_QD=30.63;BaseQRankSum=-0.522;DP=124;ExcessHet=0.0000;FS=9.939;MQ=60.00;MQRankSum=0;QD=30.63;ReadPosRankSum=1.171;SOR=0.313;VarDP=119 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,63:63:99:.:.:2803,0:.:0,0,32,31 0|1:33,23:56:99:0|1:2150826_AT_A:842,0,1262:2150826:22,11,10,13 +chrX 2150832 . T C 3650 . AC=2;AF=0.667;AN=3;AS_AltDP=87;AS_QD=30.67;BaseQRankSum=-0.841;DP=121;ExcessHet=0.0000;FS=9.828;MQ=60.00;MQRankSum=0;QD=30.67;ReadPosRankSum=1.125;SOR=0.276;VarDP=120 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,64:64:99:.:.:2838,0:.:0,0,33,31 0|1:33,23:56:99:0|1:2150826_AT_A:842,0,1262:2150826:22,11,10,13 +chrX 2156423 . AG A 636.97 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=12.52;BaseQRankSum=-0.597;DP=106;ExcessHet=0.0000;FS=5.608;MQ=60.00;MQRankSum=0;QD=12.52;ReadPosRankSum=-0.764;SOR=0.970;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:55:51:49:0,51 0/1:29,25:54:99:.:676,0,769:17,12,10,15 +chrX 2156424 . G *,A 996 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=17,20;AS_QD=0.00,34.19;DP=106;ExcessHet=0.0000;FS=5.846;MQ=59.66;QD=27.73;SOR=0.777;VarDP=37 GT:AD:DP:GQ:PL:SB 2:0,17,20:37:17:1026,17,0:0,0,17,20 0/1:29,25,0:54:99:676,0,769,763,844,1607:17,12,10,15 +chrX 2156521 . T G 2128 . AC=2;AF=0.667;AN=3;AS_AltDP=71;AS_QD=20.36;BaseQRankSum=0.135;DP=107;ExcessHet=0.0000;FS=0.777;MQ=60.00;MQRankSum=0;QD=20.36;ReadPosRankSum=-0.212;SOR=0.567;VarDP=106 GT:AD:DP:GQ:PL:SB 1:1,48:49:99:1569,0:0,1,25,23 0/1:34,23:57:99:589,0,921:15,19,8,15 +chrX 2156615 . T C 571 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=11.78;BaseQRankSum=-0.464;DP=115;ExcessHet=0.0000;FS=2.418;MQ=60.00;MQRankSum=0;QD=11.78;ReadPosRankSum=1.897;SOR=1.172;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,659 0/1:27,24:51:99:.:601,0,700:14,13,15,9 +chrX 2156833 . C T 802 . AC=2;AF=0.667;AN=3;AS_AltDP=73;AS_QD=5.70;BaseQRankSum=1.694;DP=148;ExcessHet=0.0000;FS=0.617;MQ=57.21;MQRankSum=-0.514;QD=5.70;ReadPosRankSum=1.046;SOR=0.807;VarDP=146 GT:AD:DP:GQ:PL:SB 1:44,45:89:99:120,0:21,23,20,25 0/1:29,28:57:99:712,0,772:12,17,11,17 +chrX 2156888 . A G 652 . AC=1;AF=0.500;AN=2;AS_AltDP=29;AS_QD=10.49;BaseQRankSum=-2.317;DP=132;ExcessHet=0.0000;FS=6.789;MQ=57.04;MQRankSum=-4.82;QD=10.49;ReadPosRankSum=-1.215;SOR=1.415;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB .:.:63:0:63:0,0 0/1:36,29:65:99:.:682,0,1016:19,17,10,19 +chrX 2156933 . A G 3526 . AC=2;AF=0.667;AN=3;AS_AltDP=87;AS_QD=30.92;BaseQRankSum=-2.84;DP=116;ExcessHet=0.0000;FS=2.883;MQ=53.05;MQRankSum=-4.954;QD=30.92;ReadPosRankSum=-1.727;SOR=0.818;VarDP=115 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,57:57:99:.:.:2432,0:.:0,0,27,30 0|1:28,30:58:99:0|1:2156933_A_G:1124,0,1054:2156933:15,13,12,18 +chrX 2156941 . C T 3654 . AC=2;AF=0.667;AN=3;AS_AltDP=91;AS_QD=31.49;BaseQRankSum=-0.084;DP=119;ExcessHet=0.0000;FS=2.961;MQ=53.24;MQRankSum=-4.622;QD=31.49;ReadPosRankSum=-2.268;SOR=0.531;VarDP=117 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,59:59:99:.:.:2491,0:.:0,0,30,29 0|1:26,32:58:99:0|1:2156933_A_G:1193,0,974:2156933:15,11,14,18 +chrX 2156954 . A AT 3127.97 . AC=2;AF=0.667;AN=3;AS_AltDP=84;AS_QD=27.54;BaseQRankSum=-0.055;DP=122;ExcessHet=0.0000;FS=3.898;MQ=53.72;MQRankSum=-4.893;QD=27.54;ReadPosRankSum=-0.148;SOR=0.495;VarDP=115 GT:AD:DP:GQ:PL:SB 1:0,53:53:99:2125,0:0,0,27,26 0/1:31,31:62:99:1042,0,986:18,13,14,17 +chrX 2157066 . G C 1992 . AC=2;AF=0.667;AN=3;AS_AltDP=67;AS_QD=24.07;BaseQRankSum=-0.401;DP=87;ExcessHet=0.0000;FS=0.000;MQ=59.66;MQRankSum=-1.393;QD=24.07;ReadPosRankSum=-2.05;SOR=0.639;VarDP=84 GT:AD:DP:GQ:PL:SB 1:0,50:50:99:1613,0:0,0,29,21 0/1:17,17:34:99:409,0,435:10,7,9,8 +chrX 2157344 . C G 203 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=3.48;BaseQRankSum=-1.671;DP=127;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=3.48;ReadPosRankSum=0.335;SOR=0.631;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 1:29,38:67:99:.:233,0:15,14,19,19 0/0:.:59:76:59:0,76,1369 +chrX 2157703 . C T 1604 . AC=2;AF=0.667;AN=3;AS_AltDP=81;AS_QD=12.57;BaseQRankSum=0.284;DP=135;ExcessHet=0.0000;FS=1.419;MQ=60.00;MQRankSum=0;QD=12.57;ReadPosRankSum=0.672;SOR=0.831;VarDP=130 GT:AD:DP:GQ:PL:SB 1:26,53:79:99:848,0:13,13,23,30 0/1:23,28:51:99:786,0,597:11,12,14,14 +chrX 2157888 . G C 2873 . AC=2;AF=0.667;AN=3;AS_AltDP=99;AS_QD=22.86;BaseQRankSum=-1.204;DP=130;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=22.86;ReadPosRankSum=0.499;SOR=0.782;VarDP=127 GT:AD:DP:GQ:PL:SB 1:0,66:66:99:2113,0:0,0,35,31 0/1:28,33:61:99:790,0,706:15,13,20,13 +chrX 2158098 . C A 1446 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=20.79;BaseQRankSum=-0.352;DP=141;ExcessHet=0.0000;FS=0.915;MQ=60.00;MQRankSum=0;QD=20.79;ReadPosRankSum=0.271;SOR=0.509;VarDP=71 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:70:99:70:.:.:0,1760 0|1:33,38:71:99:.:0|1:2158098_C_A:1476,0,1238:2158098:20,13,21,17 +chrX 2158101 . C T 1777 . AC=2;AF=0.667;AN=3;AS_AltDP=71;AS_QD=14.34;BaseQRankSum=0;DP=128;ExcessHet=0.0000;FS=3.234;MQ=59.93;MQRankSum=0.285;QD=14.34;ReadPosRankSum=0.533;SOR=0.511;VarDP=126 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:23,33:56:99:.:.:328,0:.:11,12,14,19 0|1:32,38:70:99:0|1:2158098_C_A:1479,0,1208:2158098:20,12,21,17 +chrX 2159203 . C G 465 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=9.90;BaseQRankSum=-0.703;DP=101;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=9.90;ReadPosRankSum=0.659;SOR=0.632;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:50:10:50:0,10 0/1:29,21:50:99:.:495,0,773:12,17,9,12 +chrX 2159642 . G T 889 . AC=2;AF=0.667;AN=3;AS_AltDP=70;AS_QD=6.52;BaseQRankSum=1.045;DP=149;ExcessHet=0.0000;FS=12.129;MQ=60.00;MQRankSum=0;QD=6.52;ReadPosRankSum=1.325;SOR=0.240;VarDP=141 GT:AD:DP:GQ:PL:SB 1:33,34:67:44:44,0:12,21,13,21 0/1:38,36:74:99:875,0,1020:12,26,22,14 +chrX 2159676 . G A 900 . AC=2;AF=0.667;AN=3;AS_AltDP=70;AS_QD=6.94;BaseQRankSum=-0.273;DP=141;ExcessHet=0.0000;FS=12.536;MQ=60.00;MQRankSum=0;QD=6.94;ReadPosRankSum=0.341;SOR=0.339;VarDP=134 GT:AD:DP:GQ:PL:SB 1:33,35:68:41:41,0:12,21,16,19 0/1:31,35:66:99:889,0,784:10,21,20,15 +chrX 2160058 . C G 637 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=12.35;BaseQRankSum=0.375;DP=125;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=12.35;ReadPosRankSum=0.364;SOR=0.576;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,164 0/1:28,26:54:99:.:667,0,731:12,16,12,14 +chrX 2160271 . T A 750 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=11.82;BaseQRankSum=0.54;DP=136;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=11.82;ReadPosRankSum=-0.85;SOR=0.713;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,164 0/1:36,30:66:99:.:780,0,959:19,17,16,14 +chrX 2160420 . T C 458 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=9.04;BaseQRankSum=-0.907;DP=121;ExcessHet=0.0000;FS=2.336;MQ=60.00;MQRankSum=0;QD=9.04;ReadPosRankSum=0.95;SOR=0.425;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,164 0/1:33,21:54:99:.:488,0,935:13,20,10,11 +chrX 2160554 . C T 394 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=3.85;BaseQRankSum=2.12;DP=119;ExcessHet=0.0000;FS=3.541;MQ=60.00;MQRankSum=0;QD=3.85;ReadPosRankSum=2.474;SOR=0.505;VarDP=110 GT:AD:DP:GQ:PL:SB 1:30,31:61:34:34,0:13,17,17,14 0/1:33,16:49:99:390,0,830:14,19,7,9 +chrX 2160602 . A G 730 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=14.07;BaseQRankSum=-0.161;DP=121;ExcessHet=0.0000;FS=3.715;MQ=60.00;MQRankSum=0;QD=14.07;ReadPosRankSum=-2.053;SOR=0.350;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:27:63:0,27 0/1:26,28:54:99:.:760,0,684:10,16,14,14 +chrX 2160769 . T C 641 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=13.69;BaseQRankSum=0.752;DP=113;ExcessHet=0.0000;FS=4.022;MQ=60.00;MQRankSum=0;QD=13.69;ReadPosRankSum=-2.161;SOR=1.047;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:27:63:0,27 0/1:24,25:49:99:.:671,0,617:11,13,15,10 +chrX 2160807 . C T 882 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=8.85;BaseQRankSum=1.654;DP=104;ExcessHet=0.0000;FS=4.850;MQ=60.00;MQRankSum=0;QD=8.85;ReadPosRankSum=0.472;SOR=1.009;VarDP=103 GT:AD:DP:GQ:PL:SB 1:24,32:56:99:299,0:12,12,15,17 0/1:24,23:47:99:613,0,569:11,13,17,6 +chrX 2160848 . G A 760 . AC=2;AF=0.667;AN=3;AS_AltDP=45;AS_QD=9.29;BaseQRankSum=2.743;DP=85;ExcessHet=0.0000;FS=7.431;MQ=60.00;MQRankSum=0;QD=9.29;ReadPosRankSum=2.52;SOR=1.561;VarDP=85 GT:AD:DP:GQ:PL:SB 1:19,26:45:99:259,0:11,8,16,10 0/1:21,19:40:99:531,0,490:10,11,15,4 +chrX 2160892 . C CAAAAA,A,CAAAAAAA 879 . AC=2,0,0;AF=0.667,0.00,0.00;AN=3;AS_AltDP=29,2,5;AS_QD=15.15,0.00,18.69;BaseQRankSum=-1.286;DP=110;ExcessHet=0.0000;FS=18.917;MQ=59.80;MQRankSum=0.111;QD=13.57;ReadPosRankSum=-0.771;SOR=0.709;VarDP=67 GT:AD:DP:GQ:PL:SB 1:18,23,0,0:41:99:147,0,917,917:13,5,11,12 0/1:13,6,2,5:26:89:762,0,489,768,395,1398,89,443,483,579:10,3,4,9 +chrX 2160951 . A G 876 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=17.76;BaseQRankSum=1.93;DP=114;ExcessHet=0.0000;FS=10.314;MQ=60.00;MQRankSum=0;QD=17.76;ReadPosRankSum=-0.387;SOR=1.403;VarDP=51 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:99:62:.:.:0,109 0|1:27,24:51:99:.:0|1:2160951_A_G:906,0,1040:2160951:16,11,8,16 +chrX 2160968 . G GA 928.97 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=18.62;BaseQRankSum=2.729;DP=115;ExcessHet=0.0000;FS=5.738;MQ=60.00;MQRankSum=0;QD=18.62;ReadPosRankSum=-0.476;SOR=0.961;VarDP=52 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:99:62:.:.:0,109 0|1:27,25:52:99:.:0|1:2160951_A_G:968,0,1058:2160951:16,11,10,15 +chrX 2160969 . G A 938 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=18.62;BaseQRankSum=2.441;DP=115;ExcessHet=0.0000;FS=5.738;MQ=60.00;MQRankSum=0;QD=18.62;ReadPosRankSum=-0.467;SOR=0.961;VarDP=52 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:99:62:.:.:0,109 0|1:27,25:52:99:.:0|1:2160951_A_G:968,0,1058:2160951:16,11,10,15 +chrX 2161025 . C A 701 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=12.39;BaseQRankSum=0.09;DP=122;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=12.39;ReadPosRankSum=0.904;SOR=0.646;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,109 0/1:31,28:59:99:.:731,0,841:17,14,15,13 +chrX 2161156 . CAAATT C 1193.97 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=17.87;BaseQRankSum=2.002;DP=137;ExcessHet=0.0000;FS=3.240;MQ=60.00;MQRankSum=0;QD=17.87;ReadPosRankSum=0.738;SOR=0.395;VarDP=69 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,109 0/1:37,32:69:99:.:1233,0,1437:22,15,16,16 +chrX 2161186 . C G 820 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=12.50;BaseQRankSum=1.138;DP=132;ExcessHet=0.0000;FS=0.908;MQ=60.00;MQRankSum=0;QD=12.50;ReadPosRankSum=0.719;SOR=0.833;VarDP=68 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:15:64:0,15 0/1:36,32:68:99:.:850,0,933:19,17,18,14 +chrX 2161245 . T C 1225 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=17.19;BaseQRankSum=2.375;DP=143;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=17.19;ReadPosRankSum=-0.748;SOR=0.752;VarDP=73 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:69:23:69:.:.:0,23 0|1:40,33:73:99:.:0|1:2161245_T_C:1255,0,1559:2161245:20,20,17,16 +chrX 2161255 . G A 1312 . AC=2;AF=0.667;AN=3;AS_AltDP=71;AS_QD=9.07;BaseQRankSum=1.864;DP=150;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=9.07;ReadPosRankSum=1.531;SOR=0.650;VarDP=148 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:35,37:72:71:.:.:71,0:.:19,16,20,17 0|1:42,34:76:99:0|1:2161245_T_C:1271,0,1620:2161245:22,20,17,17 +chrX 2161331 . G A 1114 . AC=2;AF=0.667;AN=3;AS_AltDP=74;AS_QD=8.06;BaseQRankSum=0.748;DP=145;ExcessHet=0.0000;FS=5.008;MQ=59.95;MQRankSum=0;QD=8.06;ReadPosRankSum=0.526;SOR=0.406;VarDP=142 GT:AD:DP:GQ:PL:SB 1:34,42:76:99:300,0:19,15,25,17 0/1:34,32:66:99:844,0,912:21,13,12,20 +chrX 2161370 . C T 1830 . AC=2;AF=0.667;AN=3;AS_AltDP=74;AS_QD=13.98;BaseQRankSum=-0.734;DP=134;ExcessHet=0.0000;FS=0.646;MQ=60.00;MQRankSum=0;QD=13.98;ReadPosRankSum=0.166;SOR=0.600;VarDP=133 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:28,41:69:99:.:.:569,0:.:14,14,25,16 0|1:31,33:64:99:0|1:2161370_C_T:1291,0,1151:2161370:17,14,12,21 +chrX 2161377 . C G 1922 . AC=2;AF=0.667;AN=3;AS_AltDP=76;AS_QD=14.57;BaseQRankSum=0.359;DP=135;ExcessHet=0.0000;FS=1.370;MQ=60.00;MQRankSum=0;QD=14.57;ReadPosRankSum=0.125;SOR=0.569;VarDP=134 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:27,42:69:99:.:.:629,0:.:14,13,25,17 0|1:31,34:65:99:0|1:2161370_C_T:1323,0,1148:2161370:17,14,13,21 +chrX 2161443 . A G 1202 . AC=2;AF=0.667;AN=3;AS_AltDP=68;AS_QD=10.10;BaseQRankSum=2.14;DP=125;ExcessHet=0.0000;FS=1.464;MQ=60.00;MQRankSum=0;QD=10.10;ReadPosRankSum=0.718;SOR=0.556;VarDP=122 GT:AD:DP:GQ:PL:SB 1:25,37:62:99:335,0:11,14,20,17 0/1:29,31:60:99:897,0,786:10,19,9,22 +chrX 2161667 . T C 948 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=8.15;BaseQRankSum=-0.194;DP=122;ExcessHet=0.0000;FS=1.461;MQ=60.00;MQRankSum=0;QD=8.15;ReadPosRankSum=2.275;SOR=0.527;VarDP=120 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:32,34:66:99:.:.:116,0:.:16,16,18,16 0|1:31,23:54:99:0|1:2161667_T_C:862,0,1199:2161667:19,12,11,12 +chrX 2161671 . C T 978 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=8.47;BaseQRankSum=0.494;DP=122;ExcessHet=0.0000;FS=2.335;MQ=60.00;MQRankSum=0;QD=8.47;ReadPosRankSum=2.055;SOR=0.499;VarDP=119 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:31,34:65:99:.:.:146,0:.:16,15,18,16 0|1:31,23:54:99:0|1:2161667_T_C:862,0,1199:2161667:19,12,11,12 +chrX 2161745 . C T 489 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=4.12;BaseQRankSum=0.128;DP=131;ExcessHet=0.0000;FS=0.664;MQ=60.00;MQRankSum=0;QD=4.12;ReadPosRankSum=0.711;SOR=0.587;VarDP=126 GT:AD:DP:GQ:PL:SB 1:39,40:79:50:50,0:20,19,22,18 0/1:28,19:47:99:469,0,802:16,12,8,11 +chrX 2161802 . A G 440 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=12.37;BaseQRankSum=0.536;DP=88;ExcessHet=0.0000;FS=1.336;MQ=60.00;MQRankSum=0;QD=12.37;ReadPosRankSum=-0.227;SOR=1.112;VarDP=38 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:23:49:.:.:0,23 0|1:24,14:38:99:.:0|1:2161802_A_G:470,0,884:2161802:13,11,9,5 +chrX 2161823 . T C 529 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=13.98;BaseQRankSum=0.69;DP=92;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.98;ReadPosRankSum=1.145;SOR=0.551;VarDP=40 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:23:49:.:.:0,23 0|1:24,16:40:99:.:0|1:2161802_A_G:559,0,868:2161802:13,11,8,8 +chrX 2161903 . T C 643 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=11.81;BaseQRankSum=-1.431;DP=108;ExcessHet=0.0000;FS=1.007;MQ=60.00;MQRankSum=0;QD=11.81;ReadPosRankSum=0.48;SOR=0.656;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:23:49:0,23 0/1:30,27:57:99:.:673,0,817:14,16,14,13 +chrX 2162305 . G GC 948.97 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=17.33;BaseQRankSum=0.704;DP=109;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=17.33;ReadPosRankSum=0.802;SOR=0.614;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:23:49:0,23 0/1:26,31:57:99:.:988,0,793:12,14,15,16 +chrX 2162356 . AG A 954.97 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=19.49;BaseQRankSum=-1.031;DP=103;ExcessHet=0.0000;FS=1.069;MQ=60.00;MQRankSum=0;QD=19.49;ReadPosRankSum=1.155;SOR=0.786;VarDP=51 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:23:49:.:.:0,23 0|1:25,26:51:99:.:0|1:2162356_AG_A:994,0,959:2162356:13,12,12,14 +chrX 2162364 . G A 956 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=19.33;BaseQRankSum=-0.205;DP=101;ExcessHet=0.0000;FS=2.371;MQ=59.76;MQRankSum=0;QD=19.33;ReadPosRankSum=0.669;SOR=0.679;VarDP=51 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:23:49:.:.:0,23 0|1:25,26:51:99:.:0|1:2162356_AG_A:986,0,961:2162356:14,11,12,14 +chrX 2162430 . G T 936 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=12.71;BaseQRankSum=1.191;DP=128;ExcessHet=0.0000;FS=0.869;MQ=59.78;MQRankSum=1.0;QD=12.71;ReadPosRankSum=0.541;SOR=0.617;VarDP=76 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:23:49:0,23 0/1:39,37:76:99:.:966,0,982:18,21,19,18 +chrX 2162711 . C G 1170 . AC=2;AF=0.667;AN=3;AS_AltDP=66;AS_QD=9.45;BaseQRankSum=0.806;DP=128;ExcessHet=0.0000;FS=0.660;MQ=60.00;MQRankSum=0;QD=9.45;ReadPosRankSum=1.752;SOR=0.765;VarDP=127 GT:AD:DP:GQ:PL:SB 1:22,30:52:99:270,0:12,10,16,14 0/1:39,36:75:99:930,0,995:23,16,23,13 +chrX 2162983 . T C 923 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=12.22;BaseQRankSum=-0.066;DP=145;ExcessHet=0.0000;FS=4.255;MQ=60.00;MQRankSum=0;QD=12.22;ReadPosRankSum=-0.761;SOR=0.888;VarDP=78 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,164 0/1:41,37:78:99:.:953,0,1094:22,19,16,21 +chrX 2163003 . A C 750 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=10.26;BaseQRankSum=0.864;DP=141;ExcessHet=0.0000;FS=0.000;MQ=59.87;MQRankSum=0.857;QD=10.26;ReadPosRankSum=1.063;SOR=0.628;VarDP=76 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,164 0/1:45,31:76:99:.:780,0,1179:21,24,15,16 +chrX 2163358 . CT C 363.97 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=7.46;BaseQRankSum=-0.493;DP=122;ExcessHet=0.0000;FS=4.079;MQ=60.00;MQRankSum=0;QD=7.46;ReadPosRankSum=0.735;SOR=1.371;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,164 0/1:34,20:54:99:.:403,0,790:15,19,6,14 +chrX 2163977 . T C 783 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=15.34;BaseQRankSum=-1.329;DP=123;ExcessHet=0.0000;FS=1.045;MQ=60.00;MQRankSum=0;QD=15.34;ReadPosRankSum=-0.542;SOR=0.551;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,164 0/1:22,31:53:99:.:813,0,576:9,13,14,17 +chrX 2164044 . CAA C,CA 1191.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=41,19;AS_QD=19.44,17.23;BaseQRankSum=1.066;DP=115;ExcessHet=0.0000;FS=0.000;MQ=59.73;MQRankSum=-0.95;QD=15.39;ReadPosRankSum=0.784;SOR=0.705;VarDP=80 GT:AD:DP:GQ:PL:SB 2:0,21,19:40:45:672,45,0:0,0,17,23 0/1:20,20,0:40:99:559,0,543,620,604,1223:9,11,10,10 +chrX 2164526 . T C 829 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=13.02;BaseQRankSum=-0.785;DP=130;ExcessHet=0.0000;FS=3.466;MQ=59.43;MQRankSum=1.03;QD=13.02;ReadPosRankSum=-0.398;SOR=1.282;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:70:61:0,70 0/1:33,33:66:99:.:859,0,874:18,15,22,11 +chrX 2164570 . C G 636 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=10.92;BaseQRankSum=0.412;DP=125;ExcessHet=0.0000;FS=2.182;MQ=59.83;MQRankSum=0;QD=10.92;ReadPosRankSum=-0.557;SOR=0.864;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:70:61:0,70 0/1:36,25:61:99:.:666,0,1026:17,19,14,11 +chrX 2164625 . C T 500 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=9.64;BaseQRankSum=2.136;DP=117;ExcessHet=0.0000;FS=2.332;MQ=59.81;MQRankSum=0;QD=9.64;ReadPosRankSum=-0.175;SOR=1.055;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:70:61:0,70 0/1:35,20:55:99:.:530,0,981:18,17,12,8 +chrX 2164683 . C CA 629.97 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=11.95;BaseQRankSum=-1.066;DP=118;ExcessHet=0.0000;FS=2.251;MQ=60.00;MQRankSum=0;QD=11.95;ReadPosRankSum=-1.055;SOR=1.056;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:70:61:0,70 0/1:31,25:56:99:.:669,0,896:15,16,10,15 +chrX 2164894 . AGTGT A 441.97 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=15.52;BaseQRankSum=-0.497;DP=109;ExcessHet=0.0000;FS=5.449;MQ=60.00;MQRankSum=0;QD=15.52;ReadPosRankSum=-1.804;SOR=0.991;VarDP=31 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:70:61:0,70 0/1:18,13:31:99:.:481,0,706:7,11,8,5 +chrX 2165141 . T C 609 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=11.02;BaseQRankSum=-1.868;DP=120;ExcessHet=0.0000;FS=1.013;MQ=60.00;MQRankSum=0;QD=11.02;ReadPosRankSum=-0.907;SOR=0.484;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:70:61:0,70 0/1:32,26:58:99:.:639,0,919:18,14,13,13 +chrX 2165256 . A G 773 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=12.55;BaseQRankSum=-2.548;DP=128;ExcessHet=0.0000;FS=5.067;MQ=60.00;MQRankSum=0;QD=12.55;ReadPosRankSum=-0.779;SOR=1.473;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:70:61:0,70 0/1:32,32:64:99:.:803,0,899:16,16,21,11 +chrX 2165449 . G A 934 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=9.45;BaseQRankSum=0.138;DP=106;ExcessHet=0.0000;FS=3.720;MQ=60.00;MQRankSum=0;QD=9.45;ReadPosRankSum=0.66;SOR=0.401;VarDP=102 GT:AD:DP:GQ:PL:SB 1:20,28:48:99:238,0:10,10,17,11 0/1:25,29:54:99:726,0,627:8,17,11,18 +chrX 2165480 . T C 299 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=7.15;BaseQRankSum=-1.748;DP=68;ExcessHet=0.0000;FS=8.629;MQ=60.00;MQRankSum=0;QD=7.15;ReadPosRankSum=0.402;SOR=1.752;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 1:19,27:46:99:.:329,0:9,10,19,8 0/0:.:23:31:22:0,31,639 +chrX 2165484 . G A 344 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=7.96;BaseQRankSum=1.344;DP=70;ExcessHet=0.0000;FS=8.846;MQ=60.00;MQRankSum=0;QD=7.96;ReadPosRankSum=0.092;SOR=1.836;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 1:19,28:47:99:.:374,0:9,10,20,8 0/0:.:23:31:22:0,31,639 +chrX 2165485 . C T 285 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=7.00;BaseQRankSum=-0.084;DP=68;ExcessHet=0.0000;FS=6.611;MQ=60.00;MQRankSum=0;QD=7.00;ReadPosRankSum=0.172;SOR=1.665;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 1:19,26:45:99:.:315,0:9,10,18,8 0/0:.:23:31:22:0,31,639 +chrX 2165498 . C A 263 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=6.10;BaseQRankSum=0.415;DP=71;ExcessHet=0.0000;FS=6.153;MQ=60.00;MQRankSum=0;QD=6.10;ReadPosRankSum=0.303;SOR=1.302;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 1:20,28:48:99:.:293,0:9,11,18,10 0/0:.:23:31:22:0,31,639 +chrX 2165664 . G A 115 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=3.30;BaseQRankSum=2.339;DP=69;ExcessHet=0.0000;FS=1.354;MQ=59.10;MQRankSum=-0.538;QD=3.30;ReadPosRankSum=0.294;SOR=1.071;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 1:21,23:44:99:.:145,0:6,15,5,18 0/0:.:23:31:22:0,31,639 +chrX 2165784 . C CATCA 411.97 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=22.55;BaseQRankSum=-0.755;DP=45;ExcessHet=0.0000;FS=2.128;MQ=56.48;MQRankSum=-0.984;QD=22.55;ReadPosRankSum=1.188;SOR=1.445;VarDP=20 GT:AD:DP:GQ:MIN_DP:PL:SB 1:5,15:20:99:.:451,0:2,3,4,11 0/0:.:24:31:22:0,31,655 +chrX 2165807 . G GTATA 248.97 . AC=1;AF=0.333;AN=3;AS_AltDP=9;AS_QD=22.15;BaseQRankSum=-1.242;DP=38;ExcessHet=0.0000;FS=0.000;MQ=57.66;MQRankSum=-1.05;QD=22.15;ReadPosRankSum=-1.761;SOR=0.569;VarDP=13 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:17:99:17:0,135 0/1:4,9:13:99:.:288,0,141:3,1,6,3 +chrX 2165826 . T C 375 . AC=1;AF=0.333;AN=3;AS_AltDP=10;AS_QD=28.49;BaseQRankSum=0;DP=33;ExcessHet=0.0000;FS=4.393;MQ=49.95;MQRankSum=-0.404;QD=36.82;ReadPosRankSum=1.645;SOR=1.447;VarDP=11 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,10:11:99:.:405,0:1,0,3,7 0/0:.:22:38:19:0,38,485 +chrX 2165828 . T C 330 . AC=1;AF=0.333;AN=3;AS_AltDP=9;AS_QD=27.13;DP=32;ExcessHet=0.0000;FS=5.229;MQ=49.09;MQRankSum=-0.385;QD=36.00;SOR=1.996;VarDP=10 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,9:10:99:.:360,0:1,0,2,7 0/0:.:22:38:19:0,38,485 +chrX 2165830 . T C 375 . AC=1;AF=0.333;AN=3;AS_AltDP=9;AS_QD=30.30;DP=31;ExcessHet=0.0000;FS=0.000;MQ=48.07;QD=45.00;SOR=2.093;VarDP=9 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,9:9:99:.:405,0:0,0,2,7 0/0:.:22:38:19:0,38,485 +chrX 2165832 . T C 330 . AC=1;AF=0.333;AN=3;AS_AltDP=8;AS_QD=28.76;DP=30;ExcessHet=0.0000;FS=0.000;MQ=46.84;QD=45.00;SOR=1.863;VarDP=8 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,8:8:99:.:360,0:0,0,2,6 0/0:.:22:38:19:0,38,485 +chrX 2165834 . T C 330 . AC=1;AF=0.333;AN=3;AS_AltDP=8;AS_QD=34.50;DP=30;ExcessHet=0.0000;FS=0.000;MQ=46.84;QD=45.00;SOR=1.863;VarDP=8 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,8:8:99:.:360,0:0,0,2,6 0/0:.:22:38:19:0,38,485 +chrX 2165836 . T C 330 . AC=1;AF=0.333;AN=3;AS_AltDP=8;AS_QD=31.52;DP=30;ExcessHet=0.0000;FS=0.000;MQ=46.84;QD=45.00;SOR=1.863;VarDP=8 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,8:8:99:.:360,0:0,0,2,6 0/0:.:22:38:19:0,38,485 +chrX 2165838 . T C 375 . AC=1;AF=0.333;AN=3;AS_AltDP=9;AS_QD=27.46;DP=31;ExcessHet=0.0000;FS=0.000;MQ=45.78;QD=45.00;SOR=1.402;VarDP=9 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,9:9:99:.:405,0:0,0,3,6 0/0:.:22:38:19:0,38,485 +chrX 2165840 . T C 375 . AC=1;AF=0.333;AN=3;AS_AltDP=9;AS_QD=30.44;DP=31;ExcessHet=0.0000;FS=0.000;MQ=45.78;QD=45.00;SOR=1.402;VarDP=9 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,9:9:99:.:405,0:0,0,3,6 0/0:.:22:38:19:0,38,485 +chrX 2165842 . T C 420 . AC=1;AF=0.333;AN=3;AS_AltDP=10;AS_QD=30.85;DP=32;ExcessHet=0.0000;FS=0.000;MQ=47.03;QD=45.00;SOR=1.609;VarDP=10 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,10:10:99:.:450,0:0,0,3,7 0/0:.:22:38:19:0,38,485 +chrX 2165844 . T C 420 . AC=1;AF=0.333;AN=3;AS_AltDP=10;AS_QD=27.19;DP=32;ExcessHet=0.0000;FS=0.000;MQ=47.03;QD=45.00;SOR=1.609;VarDP=10 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,10:10:99:.:450,0:0,0,3,7 0/0:.:22:38:19:0,38,485 +chrX 2165846 . T C 465 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=28.52;DP=33;ExcessHet=0.0000;FS=0.000;MQ=48.07;QD=45.00;SOR=1.270;VarDP=11 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,11:11:99:.:495,0:0,0,4,7 0/0:.:22:38:19:0,38,485 +chrX 2165847 . ATATGTG A 455.97 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=29.77;DP=33;ExcessHet=0.0000;FS=0.000;MQ=48.07;QD=45.00;SOR=1.270;VarDP=11 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,11:11:99:.:495,0:0,0,4,7 0/0:.:22:38:19:0,38,485 +chrX 2165854 . T C 465 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=33.25;DP=33;ExcessHet=0.0000;FS=0.000;MQ=48.07;QD=45.00;SOR=1.270;VarDP=11 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,11:11:99:.:495,0:0,0,4,7 0/0:.:22:38:19:0,38,485 +chrX 2165862 . T C 510 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=27.39;DP=34;ExcessHet=0.0000;FS=0.000;MQ=47.22;QD=45.00;SOR=0.693;VarDP=12 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,12:12:99:.:540,0:0,0,6,6 0/0:.:22:38:19:0,38,485 +chrX 2165864 . T C 465 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=28.30;DP=33;ExcessHet=0.0000;FS=0.000;MQ=46.17;QD=45.00;SOR=0.859;VarDP=11 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,11:11:99:.:495,0:0,0,6,5 0/0:.:22:38:19:0,38,485 +chrX 2165866 . T C 465 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=33.09;DP=33;ExcessHet=0.0000;FS=0.000;MQ=46.17;QD=45.00;SOR=0.859;VarDP=11 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,11:11:99:.:495,0:0,0,6,5 0/0:.:22:38:19:0,38,485 +chrX 2165868 . CGT C,TGT 466 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=11,2;AS_QD=15.00,0.04;BaseQRankSum=-0.276;DP=42;ExcessHet=0.0000;FS=5.153;MQ=53.18;MQRankSum=-1.726;QD=14.17;ReadPosRankSum=1.15;SOR=1.015;VarDP=35 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,11,0:11:99:.:.:495,0,495:.:0,0,6,5 0|2:22,0,2:24:1:0|1:2165868_C_T:1,67,747,0,680,674:2165868:9,13,2,0 +chrX 2165873 . ATATATATATGT A 455.97 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=28.35;DP=39;ExcessHet=0.0000;FS=0.000;MQ=46.17;QD=45.00;SOR=0.859;VarDP=11 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,11:11:99:.:495,0:0,0,6,5 0/0:.:25:54:25:0,54,810 +chrX 2165885 . A C 465 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=30.08;DP=39;ExcessHet=0.0000;FS=0.000;MQ=45.42;QD=45.00;SOR=0.859;VarDP=11 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,11:11:99:.:495,0:0,0,6,5 0/0:.:26:57:26:0,57,855 +chrX 2165894 . TAC T 298.97 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=16.10;BaseQRankSum=-0.9;DP=43;ExcessHet=0.0000;FS=0.000;MQ=57.86;MQRankSum=0;QD=16.10;ReadPosRankSum=1.022;SOR=0.859;VarDP=21 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:11:99:11:0,278 0/1:10,11:21:99:.:338,0,308:5,5,5,6 +chrX 2165900 . CACACACACA C 410.97 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=32.14;DP=40;ExcessHet=0.0000;FS=0.000;MQ=51.64;MQRankSum=-0.802;QD=32.14;SOR=0.307;VarDP=14 GT:AD:DP:GQ:MIN_DP:PL:SB 1:2,12:14:99:.:450,0:2,0,8,4 0/0:.:29:24:25:0,24,700 +chrX 2165913 . ACACAC A 455.97 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=33.00;BaseQRankSum=-0.204;DP=41;ExcessHet=0.0000;FS=0.000;MQ=52.20;MQRankSum=-0.764;QD=33.00;ReadPosRankSum=2.29;SOR=0.368;VarDP=15 GT:AD:DP:GQ:MIN_DP:PL:SB 1:2,13:15:99:.:495,0:2,0,9,4 0/0:.:29:24:25:0,24,700 +chrX 2165918 . C CTGT 455.97 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=33.00;DP=41;ExcessHet=0.0000;FS=0.000;MQ=52.20;MQRankSum=-0.764;QD=33.00;ReadPosRankSum=2.038;SOR=0.368;VarDP=15 GT:AD:DP:GQ:MIN_DP:PL:SB 1:2,13:15:99:.:495,0:2,0,9,4 0/0:.:29:24:25:0,24,700 +chrX 2165923 . AC A 423.97 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=27.24;BaseQRankSum=0;DP=43;ExcessHet=0.0000;FS=0.000;MQ=53.12;MQRankSum=-0.932;QD=27.24;ReadPosRankSum=1.201;SOR=1.148;VarDP=17 GT:AD:DP:GQ:MIN_DP:PL:SB 1:3,14:17:99:.:463,0:2,1,10,4 0/0:.:29:24:25:0,24,700 +chrX 2165929 . T C 310 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=21.25;BaseQRankSum=-0.738;DP=45;ExcessHet=0.0000;FS=0.000;MQ=56.59;MQRankSum=-0.738;QD=21.25;ReadPosRankSum=1.945;SOR=1.473;VarDP=16 GT:AD:DP:GQ:MIN_DP:PL:SB 1:4,12:16:99:.:340,0:3,1,10,2 0/0:.:29:24:25:0,24,700 +chrX 2166056 . C CTATA 1451.97 . AC=2;AF=0.667;AN=3;AS_AltDP=36;AS_QD=28.13;BaseQRankSum=0.033;DP=60;ExcessHet=0.0000;FS=1.193;MQ=60.00;MQRankSum=0;QD=28.13;ReadPosRankSum=1.605;SOR=1.084;VarDP=53 GT:AD:DP:GQ:PL:SB 1:1,26:27:99:1119,0:0,1,16,10 0/1:16,10:26:99:372,0,621:10,6,8,2 +chrX 2166088 . G GAT,GATAT 573.97 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=9,13;AS_QD=30.84,28.89;DP=74;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=27.86;SOR=0.693;VarDP=22 GT:AD:DP:GQ:MIN_DP:PL:SB 2:0,9,13:22:99:.:613,138,0:0,0,11,11 0/0:.:42:52:42:0,52,809,52,809,809 +chrX 2166292 . G T 1057 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=31.47;DP=75;ExcessHet=0.0000;FS=0.000;MQ=57.37;QD=37.48;SOR=0.906;VarDP=29 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,29:29:99:.:1087,0:0,0,16,13 0/0:.:42:52:42:0,52,809 +chrX 2166451 . C A 977 . AC=1;AF=0.500;AN=2;AS_AltDP=28;AS_QD=23.98;BaseQRankSum=1.459;DP=70;ExcessHet=0.0000;FS=4.918;MQ=58.63;MQRankSum=-0.976;QD=23.98;ReadPosRankSum=0.621;SOR=1.609;VarDP=42 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB .:.:25:0:25:.:.:0,0 0|1:14,28:42:99:.:0|1:2166451_C_A:1007,0,425:2166451:7,7,9,19 +chrX 2166491 . T TAC 946.97 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=23.48;BaseQRankSum=-0.088;DP=86;ExcessHet=0.0000;FS=4.638;MQ=60.00;MQRankSum=0;QD=23.48;ReadPosRankSum=-1.591;SOR=1.108;VarDP=42 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:44:2:44:.:.:0,2 0|1:16,26:42:99:.:0|1:2166451_C_A:986,0,563:2166451:9,7,10,16 +chrX 2166587 . T C,TTC 312 . AC=1,0;AF=0.333,0.00;AN=3;AS_AltDP=12,8;AS_QD=28.50,15.00;DP=78;ExcessHet=0.0000;FS=0.000;MQ=59.86;QD=17.10;SOR=1.127;VarDP=20 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,12,8:20:99:.:342,0,222:0,0,12,8 0/0:.:57:53:57:0,53,1011,53,1011,1011 +chrX 2166685 . ATGTG A,GTGTG 1181 . AC=1,0;AF=0.333,0.00;AN=3;AS_AltDP=27,17;AS_QD=29.82,30.50;DP=102;ExcessHet=0.0000;FS=0.000;MQ=59.57;QD=27.52;SOR=1.105;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,27,17:44:99:.:1211,0,448:0,0,26,18 0/0:.:57:53:57:0,53,1011,53,1011,1011 +chrX 2166706 . TATATATACACAC T 287.97 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=6.67;BaseQRankSum=-0.711;DP=109;ExcessHet=0.0000;FS=1.129;MQ=59.74;MQRankSum=1.196;QD=6.67;ReadPosRankSum=0.242;SOR=0.432;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 1:21,28:49:99:.:327,0:13,8,15,13 0/0:.:57:53:57:0,53,1011 +chrX 2167621 . T C 2286 . AC=1;AF=0.333;AN=3;AS_AltDP=71;AS_QD=32.62;DP=129;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.62;SOR=1.195;VarDP=71 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,71:71:99:.:2316,0:0,0,28,43 0/0:.:57:53:57:0,53,1011 +chrX 2168168 . T A 312 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=7.43;BaseQRankSum=0.973;DP=115;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=7.43;ReadPosRankSum=0.124;SOR=0.836;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 1:18,28:46:99:.:342,0:9,9,15,13 0/0:.:68:54:68:0,54,1440 +chrX 2168370 . T C 164 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=3.96;BaseQRankSum=1.099;DP=122;ExcessHet=0.0000;FS=1.114;MQ=60.00;MQRankSum=0;QD=3.96;ReadPosRankSum=0.523;SOR=0.461;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 1:22,27:49:99:.:194,0:9,13,13,14 0/0:.:68:54:68:0,54,1440 +chrX 2169329 . A AT 79.97 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=3.22;BaseQRankSum=-1.571;DP=119;ExcessHet=0.0000;FS=7.848;MQ=59.91;MQRankSum=-0.771;QD=3.22;ReadPosRankSum=-2.569;SOR=2.093;VarDP=37 GT:AD:DP:GQ:MIN_DP:PL:SB 1:15,22:37:99:.:119,0:7,8,5,17 0/0:.:68:54:68:0,54,1440 +chrX 2169461 . CT C 161.97 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=6.48;BaseQRankSum=-0.371;DP=89;ExcessHet=0.0000;FS=3.151;MQ=59.57;MQRankSum=-1.192;QD=6.48;ReadPosRankSum=-1.988;SOR=1.302;VarDP=31 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:48:99:48:0,1017 0/1:19,12:31:99:.:201,0,343:9,10,4,8 +chrX 2169693 . T C 1637 . AC=1;AF=0.333;AN=3;AS_AltDP=50;AS_QD=33.34;DP=105;ExcessHet=0.0000;FS=0.000;MQ=59.58;QD=33.34;SOR=1.270;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,50:50:99:.:1667,0:0,0,19,31 0/0:.:54:50:54:0,50,1121 +chrX 2169752 . T C 1507 . AC=1;AF=0.333;AN=3;AS_AltDP=48;AS_QD=32.02;DP=104;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.02;SOR=1.298;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,48:48:99:.:1537,0:0,0,18,30 0/0:.:54:50:54:0,50,1121 +chrX 2169831 . C CT 291.97 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=10.34;BaseQRankSum=0.835;DP=105;ExcessHet=0.0000;FS=11.339;MQ=59.58;MQRankSum=1.086;QD=10.34;ReadPosRankSum=0.502;SOR=1.773;VarDP=32 GT:AD:DP:GQ:MIN_DP:PL:SB 1:7,25:32:99:.:331,0:2,5,18,7 0/0:.:54:50:54:0,50,1121 +chrX 2170322 . G A 179 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=3.67;BaseQRankSum=1.129;DP=119;ExcessHet=0.0000;FS=1.004;MQ=60.00;MQRankSum=0;QD=3.67;ReadPosRankSum=2.7;SOR=0.846;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 1:26,31:57:99:.:209,0:11,15,12,19 0/0:.:61:75:61:0,75,1046 +chrX 2170358 . A C 2021 . AC=1;AF=0.333;AN=3;AS_AltDP=64;AS_QD=32.05;DP=127;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.05;SOR=1.044;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,64:64:99:.:2051,0:0,0,27,37 0/0:.:61:75:61:0,75,1046 +chrX 2170465 . ATGTGTG A,ATG 1542.97 . AC=1,0;AF=0.333,0.00;AN=3;AS_AltDP=32,26;AS_QD=27.33,25.72;DP=128;ExcessHet=0.0000;FS=3.395;MQ=60.00;MQRankSum=0;QD=26.81;SOR=0.556;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,32,26:59:99:.:1582,0,189:1,0,26,32 0/0:.:61:75:61:0,75,1046,75,1046,1046 +chrX 2170737 . T C 1562 . AC=1;AF=0.333;AN=3;AS_AltDP=52;AS_QD=30.62;DP=116;ExcessHet=0.0000;FS=0.000;MQ=59.91;QD=30.62;SOR=0.770;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,52:52:99:.:1592,0:0,0,27,25 0/0:.:61:75:61:0,75,1046 +chrX 2170914 . CT C 1302.97 . AC=1;AF=0.333;AN=3;AS_AltDP=51;AS_QD=25.81;DP=126;ExcessHet=0.0000;FS=0.000;MQ=59.44;MQRankSum=4.122;QD=25.81;SOR=0.311;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,51:52:99:.:1342,0:1,0,28,23 0/0:.:61:75:61:0,75,1046 +chrX 2172068 . C T 475 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=9.53;BaseQRankSum=-0.282;DP=131;ExcessHet=0.0000;FS=1.087;MQ=60.00;MQRankSum=0;QD=9.53;ReadPosRankSum=0.101;SOR=0.847;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:71:54:71:0,54 0/1:33,20:53:99:.:505,0,944:16,17,11,9 +chrX 2173478 . A G 961 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=14.16;BaseQRankSum=-0.101;DP=143;ExcessHet=0.0000;FS=10.460;MQ=60.00;MQRankSum=0;QD=14.16;ReadPosRankSum=-1.693;SOR=1.630;VarDP=70 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:71:54:71:0,54 0/1:32,38:70:99:.:991,0,804:17,15,12,26 +chrX 2173817 . A AT 459.97 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=10.62;BaseQRankSum=1.316;DP=123;ExcessHet=0.0000;FS=14.400;MQ=60.00;MQRankSum=0;QD=10.62;ReadPosRankSum=0.182;SOR=2.636;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:71:54:71:0,54 0/1:26,21:47:99:.:499,0,652:13,13,17,4 +chrX 2173900 . C T 639 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=11.53;BaseQRankSum=1.18;DP=130;ExcessHet=0.0000;FS=7.023;MQ=60.00;MQRankSum=0;QD=11.53;ReadPosRankSum=1.736;SOR=1.103;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:71:54:71:0,54 0/1:32,26:58:99:.:669,0,816:14,18,16,10 +chrX 2174460 . C G 702 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=14.08;BaseQRankSum=-0.513;DP=125;ExcessHet=0.0000;FS=3.963;MQ=60.00;MQRankSum=0;QD=14.08;ReadPosRankSum=0.645;SOR=1.212;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:71:54:71:0,54 0/1:23,29:52:99:.:732,0,583:11,12,18,11 +chrX 2174574 . G GT 182.97 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=6.73;BaseQRankSum=0.022;DP=96;ExcessHet=0.0000;FS=5.618;MQ=58.76;MQRankSum=-0.396;QD=6.73;ReadPosRankSum=-1.348;SOR=1.828;VarDP=33 GT:AD:DP:GQ:MIN_DP:PL:SB 1:12,21:33:99:.:222,0:6,6,6,15 0/0:.:56:93:56:0,93,1405 +chrX 2174581 . TTTTTTG T 611.97 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=16.69;BaseQRankSum=1.349;DP=105;ExcessHet=0.0000;FS=4.920;MQ=58.15;MQRankSum=-0.716;QD=16.69;ReadPosRankSum=1.142;SOR=1.552;VarDP=39 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:54:80:54:.:.:0,80 0|1:21,18:39:99:.:0|1:2174581_TTTTTTG_T:651,0,756:2174581:8,13,4,14 +chrX 2175101 . C A 300 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=12.69;BaseQRankSum=0.043;DP=81;ExcessHet=0.0000;FS=0.000;MQ=59.66;MQRankSum=1.077;QD=12.69;ReadPosRankSum=-1.226;SOR=0.425;VarDP=26 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:54:80:54:0,80 0/1:13,13:26:99:.:330,0,337:10,3,9,4 +chrX 2175249 . T C 836 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=7.94;BaseQRankSum=-1.368;DP=110;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=7.94;ReadPosRankSum=1.131;SOR=0.648;VarDP=109 GT:AD:DP:GQ:PL:SB 1:24,27:51:59:59,0:13,11,15,12 0/1:27,31:58:99:807,0,745:14,13,15,16 +chrX 2175520 . T C 1134 . AC=2;AF=0.667;AN=3;AS_AltDP=65;AS_QD=9.54;BaseQRankSum=0.456;DP=126;ExcessHet=0.0000;FS=1.423;MQ=60.00;MQRankSum=0;QD=9.54;ReadPosRankSum=0.367;SOR=0.630;VarDP=122 GT:AD:DP:GQ:PL:SB 1:24,36:60:99:437,0:9,15,15,21 0/1:33,29:62:99:727,0,836:18,15,18,11 +chrX 2175575 . T C 1165 . AC=2;AF=0.667;AN=3;AS_AltDP=75;AS_QD=8.54;BaseQRankSum=1.525;DP=142;ExcessHet=0.0000;FS=1.333;MQ=60.00;MQRankSum=0;QD=8.54;ReadPosRankSum=0.455;SOR=0.570;VarDP=140 GT:AD:DP:GQ:PL:SB 1:33,45:78:99:412,0:17,16,24,21 0/1:32,30:62:99:783,0,762:19,13,15,15 +chrX 2176251 . C T 1433 . AC=2;AF=0.667;AN=3;AS_AltDP=73;AS_QD=11.17;BaseQRankSum=2.831;DP=136;ExcessHet=0.0000;FS=0.651;MQ=60.00;MQRankSum=0;QD=11.17;ReadPosRankSum=2.86;SOR=0.657;VarDP=131 GT:AD:DP:GQ:PL:SB 1:25,42:67:99:611,0:13,12,20,22 0/1:33,31:64:99:852,0,776:15,18,17,14 +chrX 2176434 . A G 1148 . AC=2;AF=0.667;AN=3;AS_AltDP=84;AS_QD=7.85;BaseQRankSum=0.499;DP=155;ExcessHet=0.0000;FS=3.839;MQ=60.00;MQRankSum=0;QD=7.85;ReadPosRankSum=0.267;SOR=0.543;VarDP=150 GT:AD:DP:GQ:PL:SB 1:42,46:88:99:149,0:23,19,22,24 0/1:24,38:62:99:1029,0,588:14,10,19,19 +chrX 2177265 . G A 462 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=9.84;BaseQRankSum=0.487;DP=114;ExcessHet=0.0000;FS=4.116;MQ=60.00;MQRankSum=0;QD=9.84;ReadPosRankSum=-0.051;SOR=0.537;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 1:18,32:50:99:.:492,0:7,11,17,15 0/0:.:63:96:63:0,96,1345 +chrX 2177302 . C T 812 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=15.89;BaseQRankSum=-1.081;DP=117;ExcessHet=0.0000;FS=1.078;MQ=60.00;MQRankSum=0;QD=15.89;ReadPosRankSum=-1.427;SOR=0.452;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,124 0/1:23,30:53:99:.:842,0,628:9,14,14,16 +chrX 2177500 . T G 885 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=14.52;BaseQRankSum=1.747;DP=125;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.52;ReadPosRankSum=0.998;SOR=0.709;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,124 0/1:30,33:63:99:.:915,0,763:19,11,21,12 +chrX 2177891 . T C 1100 . AC=1;AF=0.333;AN=3;AS_AltDP=39;AS_QD=15.69;BaseQRankSum=3.92;DP=137;ExcessHet=0.0000;FS=3.243;MQ=59.59;MQRankSum=1.568;QD=15.69;ReadPosRankSum=0.22;SOR=1.141;VarDP=72 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,124 0/1:33,39:72:99:.:1130,0,771:15,18,14,25 +chrX 2177959 . G T 1081 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=10.68;BaseQRankSum=1.826;DP=106;ExcessHet=0.0000;FS=4.844;MQ=59.52;MQRankSum=1.485;QD=10.68;ReadPosRankSum=0.846;SOR=0.376;VarDP=104 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:25,26:51:56:.:.:56,0:.:8,17,11,15 0|1:26,27:53:99:0|1:2177959_G_T:1055,0,1000:2177959:11,15,14,13 +chrX 2177961 . C A 1081 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=10.68;BaseQRankSum=1.768;DP=104;ExcessHet=0.0000;FS=4.844;MQ=59.51;MQRankSum=1.485;QD=10.68;ReadPosRankSum=0.863;SOR=0.376;VarDP=104 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:25,26:51:56:.:.:56,0:.:8,17,11,15 0|1:26,27:53:99:0|1:2177959_G_T:1055,0,1000:2177959:11,15,14,13 +chrX 2178648 . TAC T,TCCACACACACAC,TCCACACAC 1242.97 . AC=1,1,1;AF=0.333,0.333,0.333;AN=3;AS_AltDP=22,23,21;AS_QD=21.21,13.84,30.26;BaseQRankSum=-0.384;DP=91;ExcessHet=0.0000;FS=0.000;MQ=59.45;MQRankSum=-0.253;QD=18.85;ReadPosRankSum=0.357;SOR=0.693;VarDP=68 GT:AD:DP:GQ:PL:SB 2:2,13,23,0:38:51:346,51,0,677:1,1,23,13 1/3:0,9,0,21:30:99:936,728,722,990,768,1182,240,0,467,587:0,0,10,20 +chrX 2178696 . T C 612 . AC=2;AF=0.667;AN=3;AS_AltDP=42;AS_QD=7.38;BaseQRankSum=2.25;DP=89;ExcessHet=0.0000;FS=0.000;MQ=59.06;MQRankSum=-1.604;QD=7.38;ReadPosRankSum=0.911;SOR=0.662;VarDP=87 GT:AD:DP:GQ:PL:SB 1:22,26:48:99:114,0:12,10,14,12 0/1:23,16:39:99:528,0,747:8,15,5,11 +chrX 2178818 . CT C 362.97 . AC=2;AF=0.667;AN=3;AS_AltDP=35;AS_QD=5.66;BaseQRankSum=1.127;DP=88;ExcessHet=0.0000;FS=0.977;MQ=60.00;MQRankSum=0;QD=5.66;ReadPosRankSum=0.614;SOR=0.543;VarDP=71 GT:AD:DP:GQ:PL:SB 1:15,17:32:57:57,0:10,5,14,3 0/1:21,18:39:99:345,0,443:16,5,10,8 +chrX 2179338 . A G 896 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=14.94;BaseQRankSum=0.23;DP=122;ExcessHet=0.0000;FS=5.094;MQ=60.00;MQRankSum=0;QD=14.94;ReadPosRankSum=-0.587;SOR=0.289;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:44:57:0,44 0/1:28,34:62:99:.:926,0,697:18,10,17,17 +chrX 2179394 . A G 620 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=11.21;BaseQRankSum=1.806;DP=115;ExcessHet=0.0000;FS=2.244;MQ=60.00;MQRankSum=0;QD=11.21;ReadPosRankSum=-0.346;SOR=0.544;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:44:57:0,44 0/1:33,25:58:99:.:650,0,839:19,14,12,13 +chrX 2179569 . G A 357 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=10.18;BaseQRankSum=0.355;DP=97;ExcessHet=0.0000;FS=1.378;MQ=60.00;MQRankSum=0;QD=10.18;ReadPosRankSum=0.418;SOR=1.038;VarDP=38 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:44:57:0,44 0/1:23,15:38:99:.:387,0,645:8,15,4,11 +chrX 2180204 . T C 546 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=10.87;BaseQRankSum=-1.527;DP=112;ExcessHet=0.0000;FS=5.672;MQ=60.00;MQRankSum=0;QD=10.87;ReadPosRankSum=1.284;SOR=1.049;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:44:57:0,44 0/1:30,23:53:99:.:576,0,878:13,17,14,9 +chrX 2180713 . C CTCTATCTA,CTCTATCTATCTA 506.97 . AC=1,0;AF=0.333,0.00;AN=3;AS_AltDP=22,0;AS_QD=10.71,0.00;BaseQRankSum=1.6;DP=128;ExcessHet=0.0000;FS=3.648;MQ=60.00;MQRankSum=0;QD=10.71;ReadPosRankSum=1.46;SOR=0.230;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:44:57:0,44,44 0/1:29,22,0:51:99:.:546,0,1064,692,1134,2062:7,21,4,6 +chrX 2180748 . G T 983 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=17.47;BaseQRankSum=2.211;DP=120;ExcessHet=0.0000;FS=10.824;MQ=60.00;MQRankSum=0;QD=17.47;ReadPosRankSum=1.194;SOR=0.123;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:44:57:0,44 0/1:30,28:58:99:.:1013,0,1065:7,23,11,12 +chrX 2180854 . GTATC G 712.97 . AC=2;AF=0.667;AN=3;AS_AltDP=48;AS_QD=7.23;BaseQRankSum=-0.734;DP=121;ExcessHet=0.0000;FS=1.601;MQ=60.00;MQRankSum=0;QD=7.23;ReadPosRankSum=0.072;SOR=0.910;VarDP=104 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:28,30:58:85:.:.:85,0:.:15,13,16,14 0|1:28,18:46:99:0|1:2180854_GTATC_G:667,0,1104:2180854:16,12,13,5 +chrX 2180884 . T TCTGC 809.97 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=15.44;BaseQRankSum=-0.044;DP=137;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=15.44;ReadPosRankSum=-0.367;SOR=0.698;VarDP=55 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:80:99:80:.:.:0,1485 0|1:32,23:55:99:.:0|1:2180854_GTATC_G:849,0,1264:2180854:18,14,13,10 +chrX 2180926 . C CT 855.97 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=15.43;BaseQRankSum=1.472;DP=139;ExcessHet=0.0000;FS=3.922;MQ=60.00;MQRankSum=0;QD=15.43;ReadPosRankSum=2.448;SOR=0.307;VarDP=58 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:80:99:80:.:.:0,1485 0|1:34,24:58:99:.:0|1:2180926_C_CT:895,0,1304:2180926:24,10,14,10 +chrX 2180928 . T TCAC 877.97 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=15.54;BaseQRankSum=0.309;DP=144;ExcessHet=0.0000;FS=5.503;MQ=60.00;MQRankSum=0;QD=15.54;ReadPosRankSum=2.164;SOR=0.264;VarDP=59 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:80:99:80:.:.:0,1485 0|1:34,25:59:99:.:0|1:2180926_C_CT:917,0,1302:2180926:24,10,14,11 +chrX 2181152 . A G 705 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=10.35;BaseQRankSum=-0.697;DP=147;ExcessHet=0.0000;FS=0.912;MQ=60.00;MQRankSum=0;QD=10.35;ReadPosRankSum=0.961;SOR=0.850;VarDP=71 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:74:10:74:0,10 0/1:41,30:71:99:.:735,0,1127:23,18,18,12 +chrX 2181248 . AT A 619.97 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=9.69;BaseQRankSum=-0.283;DP=149;ExcessHet=0.0000;FS=3.512;MQ=60.00;MQRankSum=0;QD=9.69;ReadPosRankSum=-0.681;SOR=1.270;VarDP=68 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,868 0/1:37,31:68:99:.:659,0,812:22,15,22,9 +chrX 2181648 . CATCT C 1018.97 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=9.98;BaseQRankSum=-0.355;DP=121;ExcessHet=0.0000;FS=2.525;MQ=60.00;MQRankSum=0;QD=9.98;ReadPosRankSum=1.564;SOR=1.022;VarDP=106 GT:AD:DP:GQ:PL:SB 1:27,28:55:41:41,0:14,13,16,12 0/1:25,26:51:99:1017,0,966:12,13,15,11 +chrX 2182365 . G C 669 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=11.85;BaseQRankSum=-0.971;DP=125;ExcessHet=0.0000;FS=3.657;MQ=60.00;MQRankSum=0;QD=11.85;ReadPosRankSum=-0.297;SOR=1.302;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:58:64:0,58 0/1:32,27:59:99:.:699,0,891:16,16,17,10 +chrX 2182638 . G A 585 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=12.81;BaseQRankSum=-0.955;DP=113;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=12.81;ReadPosRankSum=0.992;SOR=0.711;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:58:64:0,58 0/1:25,23:48:99:.:615,0,702:13,12,11,12 +chrX 2183113 . A G 1150 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=10.83;BaseQRankSum=1.264;DP=115;ExcessHet=0.0000;FS=0.000;MQ=59.68;MQRankSum=-0.708;QD=10.83;ReadPosRankSum=0.744;SOR=0.677;VarDP=109 GT:AD:DP:GQ:PL:SB 1:21,38:59:99:545,0:9,12,21,17 0/1:26,24:50:99:635,0,679:17,9,13,11 +chrX 2183673 . T C 779 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=13.95;BaseQRankSum=0.21;DP=125;ExcessHet=0.0000;FS=2.150;MQ=60.00;MQRankSum=0;QD=13.95;ReadPosRankSum=-0.304;SOR=0.460;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:5:61:0,5 0/1:28,30:58:99:.:809,0,724:12,16,15,15 +chrX 2183833 . T C 3233 . AC=3;AF=1.00;AN=3;AS_AltDP=100;AS_QD=32.63;DP=102;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.63;SOR=1.284;VarDP=100 GT:AD:DP:GQ:PL:SB 1:0,54:54:99:1755,0:0,0,35,19 1/1:0,46:46:99:1508,138,0:0,0,27,19 +chrX 2184026 . C G 626 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=14.26;BaseQRankSum=-1.713;DP=107;ExcessHet=0.0000;FS=11.360;MQ=60.00;MQRankSum=0;QD=14.26;ReadPosRankSum=2.051;SOR=1.272;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:99:60:0,269 0/1:20,26:46:99:.:656,0,538:13,7,9,17 +chrX 2184580 . A C 3029 . AC=3;AF=1.00;AN=3;AS_AltDP=91;AS_QD=33.62;DP=94;ExcessHet=0.0000;FS=0.000;MQ=59.24;QD=33.62;SOR=0.959;VarDP=91 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,46:46:99:.:.:1440,0:.:0,0,22,24 1|1:0,45:45:99:0|1:2184580_A_C:1619,135,0:2184580:0,0,18,27 +chrX 2184629 . CT C 674.97 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=15.19;BaseQRankSum=2.196;DP=92;ExcessHet=0.0000;FS=2.591;MQ=59.50;MQRankSum=0;QD=15.19;ReadPosRankSum=-0.759;SOR=1.292;VarDP=47 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:45:18:43:.:.:0,18 0|1:28,19:47:99:.:0|1:2184580_A_C:714,0,1077:2184580:14,14,7,12 +chrX 2184631 . A C 684 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=15.19;BaseQRankSum=2.011;DP=90;ExcessHet=0.0000;FS=2.591;MQ=60.00;MQRankSum=0;QD=15.19;ReadPosRankSum=-0.694;SOR=1.292;VarDP=47 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:45:18:43:.:.:0,18 0|1:28,19:47:99:.:0|1:2184580_A_C:714,0,1077:2184580:14,14,7,12 +chrX 2184793 . CATCTATCTATCT C,CATCTATCT 2226.97 . AC=2,0;AF=0.667,0.00;AN=3;AS_AltDP=56,22;AS_QD=28.68,22.62;BaseQRankSum=-1.013;DP=121;ExcessHet=0.0000;FS=0.900;MQ=60.00;MQRankSum=0;QD=22.44;ReadPosRankSum=0.267;SOR=0.520;VarDP=101 GT:AD:DP:GQ:PL:SB 1:0,34,22:56:99:1463,0,445:0,0,27,29 0/1:23,22,0:45:99:803,0,878,872,945,1817:13,10,13,9 +chrX 2184846 . TTCTA T,TTCTATCTA 358.97 . AC=1,0;AF=0.333,0.00;AN=3;AS_AltDP=11,0;AS_QD=15.31,0.00;BaseQRankSum=-0.826;DP=112;ExcessHet=0.0000;FS=3.707;MQ=60.00;MQRankSum=0;QD=15.31;ReadPosRankSum=-0.164;SOR=0.506;VarDP=26 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:63:64:0,63,63 0/1:15,11,0:26:99:.:398,0,738,440,625,1099:10,5,5,6 +chrX 2184889 . T C,TATCC,TATCTATCC 813 . AC=0,0,1;AF=0.00,0.00,0.333;AN=3;AS_AltDP=0,0,14;AS_QD=13.22,13.67,26.34;BaseQRankSum=0.414;DP=114;ExcessHet=0.0000;FS=3.270;MQ=60.00;MQRankSum=0;QD=26.34;ReadPosRankSum=1.845;SOR=1.445;VarDP=32 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:63:64:0,63,63,63 0/3:18,0,0,14:32:99:.:843,605,1398,597,1363,1381,0,666,698,653:10,8,10,4 +chrX 2184950 . A T 1064 . AC=2;AF=0.667;AN=3;AS_AltDP=64;AS_QD=9.04;BaseQRankSum=1.455;DP=130;ExcessHet=0.0000;FS=1.450;MQ=59.96;MQRankSum=0;QD=9.04;ReadPosRankSum=0.256;SOR=0.538;VarDP=121 GT:AD:DP:GQ:PL:SB 1:27,40:67:99:432,0:14,13,20,20 0/1:30,24:54:99:662,0,830:17,13,12,12 +chrX 2185177 . T TTCTA 1324.97 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=11.66;BaseQRankSum=2.452;DP=128;ExcessHet=0.0000;FS=1.485;MQ=60.00;MQRankSum=0;QD=11.66;ReadPosRankSum=-0.382;SOR=0.536;VarDP=117 GT:AD:DP:GQ:PL:SB 1:24,31:55:99:291,0:8,16,15,16 0/1:34,28:62:99:1073,0,1323:16,18,12,16 +chrX 2185664 . G A 1133 . AC=2;AF=0.667;AN=3;AS_AltDP=67;AS_QD=9.38;BaseQRankSum=-0.039;DP=128;ExcessHet=0.0000;FS=6.737;MQ=60.00;MQRankSum=0;QD=9.38;ReadPosRankSum=0.396;SOR=0.630;VarDP=124 GT:AD:DP:GQ:PL:SB 1:25,32:57:99:208,0:11,14,17,15 0/1:32,35:67:99:955,0,831:13,19,19,16 +chrX 2185923 . A C 641 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=13.42;BaseQRankSum=0.443;DP=136;ExcessHet=0.0000;FS=0.000;MQ=57.31;MQRankSum=0.943;QD=13.42;ReadPosRankSum=-0.146;SOR=0.846;VarDP=50 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:84:99:84:.:.:0,691 0|1:24,26:50:99:.:0|1:2185923_A_C:671,0,636:2185923:12,12,14,12 +chrX 2186079 . T C 624 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=17.68;BaseQRankSum=0.36;DP=122;ExcessHet=0.0000;FS=4.883;MQ=59.39;MQRankSum=-1.03;QD=17.68;ReadPosRankSum=0.747;SOR=1.290;VarDP=37 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:84:99:84:.:.:0,691 0|1:20,17:37:99:.:0|1:2186079_T_C:654,0,768:2186079:11,9,6,11 +chrX 2186084 . T TCA 645.97 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=18.03;BaseQRankSum=-0.04;DP=122;ExcessHet=0.0000;FS=6.784;MQ=59.69;MQRankSum=-1.001;QD=18.03;ReadPosRankSum=0.666;SOR=1.422;VarDP=38 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:84:99:84:.:.:0,691 0|1:20,18:38:99:.:0|1:2186079_T_C:685,0,786:2186079:11,9,6,12 +chrX 2186085 . AGG A 642.97 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=17.49;BaseQRankSum=1.398;DP=125;ExcessHet=0.0000;FS=4.763;MQ=59.72;MQRankSum=-1.029;QD=17.49;ReadPosRankSum=0.614;SOR=1.456;VarDP=39 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:84:99:84:.:.:0,691 0|1:21,18:39:99:.:0|1:2186079_T_C:682,0,807:2186079:11,10,6,12 +chrX 2186343 . T A 461 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=11.42;BaseQRankSum=-2.434;DP=130;ExcessHet=0.0000;FS=1.172;MQ=57.07;MQRankSum=0.233;QD=11.42;ReadPosRankSum=0.302;SOR=0.645;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:84:99:84:0,691 0/1:22,21:43:99:.:491,0,724:12,10,10,11 +chrX 2186367 . C G 263 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=5.53;BaseQRankSum=0.597;DP=139;ExcessHet=0.0000;FS=0.000;MQ=55.65;MQRankSum=-0.728;QD=5.53;ReadPosRankSum=0.258;SOR=0.502;VarDP=53 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:84:99:84:.:.:0,691 0|1:42,11:53:99:.:0|1:2186367_C_G:293,0,1710:2186367:25,17,6,5 +chrX 2186370 . T C 2772 . AC=3;AF=1.00;AN=3;AS_AltDP=97;AS_QD=21.23;BaseQRankSum=0.684;DP=136;ExcessHet=0.0000;FS=3.660;MQ=56.75;MQRankSum=0.422;QD=21.23;ReadPosRankSum=1.537;SOR=0.590;VarDP=132 GT:AD:DP:GQ:PL:SB 1:30,49:79:99:945,0:12,18,23,26 1/1:5,48:53:10:1857,10,0:3,2,28,20 +chrX 2186398 . C A 105 . AC=1;AF=0.333;AN=3;AS_AltDP=8;AS_QD=1.90;BaseQRankSum=0.559;DP=149;ExcessHet=0.0000;FS=0.000;MQ=56.57;MQRankSum=-1.826;QD=1.90;ReadPosRankSum=0.212;SOR=0.759;VarDP=71 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:77:99:77:.:.:0,164 0|1:63,8:71:99:.:0|1:2186367_C_G:135,0,2620:2186367:37,26,5,3 +chrX 2186431 . C A 528 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=6.98;BaseQRankSum=-1.289;DP=159;ExcessHet=0.0000;FS=2.016;MQ=57.10;MQRankSum=-0.495;QD=6.98;ReadPosRankSum=0.819;SOR=0.634;VarDP=80 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:77:99:77:0,164 0/1:57,23:80:99:.:558,0,1693:31,26,11,12 +chrX 2186500 . G A 315 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=4.01;BaseQRankSum=2.442;DP=163;ExcessHet=0.0000;FS=11.787;MQ=57.95;MQRankSum=-0.784;QD=4.01;ReadPosRankSum=-1.188;SOR=1.374;VarDP=86 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:77:99:77:0,164 0/1:68,18:86:99:.:345,0,2288:40,28,6,12 +chrX 2186598 . G A 1741 . AC=2;AF=0.667;AN=3;AS_AltDP=78;AS_QD=14.06;BaseQRankSum=1.406;DP=196;ExcessHet=0.0000;FS=1.483;MQ=55.54;MQRankSum=-0.528;QD=14.06;ReadPosRankSum=0.331;SOR=0.899;VarDP=126 GT:AD:DP:GQ:PL:SB 1:23,49:72:99:1121,0:15,8,30,19 0/1:25,29:54:99:650,0,472:9,15,13,15 +chrX 2186620 . A G 202 . AC=1;AF=0.500;AN=2;AS_AltDP=14;AS_QD=4.94;BaseQRankSum=1.393;DP=177;ExcessHet=0.0000;FS=1.303;MQ=55.59;MQRankSum=-1.955;QD=4.94;ReadPosRankSum=0.925;SOR=0.446;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB .:.:91:0:91:0,0 0/1:33,14:47:99:.:232,0,844:14,19,6,6 +chrX 2187355 . G A,* 1408 . AC=3,0;AF=1.00,0.00;AN=3;AS_AltDP=50,2;AS_QD=26.15,0.00;BaseQRankSum=1.997;DP=60;ExcessHet=0.0000;FS=1.907;MQ=57.73;MQRankSum=1.966;QD=25.23;ReadPosRankSum=1.34;SOR=0.867;VarDP=57 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:4,28,0:32:99:.:.:769,0,848:.:2,2,16,12 1|1:1,22,2:25:1:1|0:2187319_TGGTGGAAGGTACCATTTCCGGGCAAGTGGGTCACCGCCTTCAATGGAAGGTACCATTGCCGGGAAAATGGGTCACTGCCTTG_T:669,44,0,659,1,923:2187319:0,1,14,10 +chrX 2187543 . C G 687 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=13.04;BaseQRankSum=-0.627;DP=116;ExcessHet=0.0000;FS=1.038;MQ=59.14;MQRankSum=-0.972;QD=13.04;ReadPosRankSum=-0.792;SOR=0.501;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,124 0/1:27,28:55:99:.:717,0,719:16,11,15,13 +chrX 2187696 . T A 619 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=5.90;BaseQRankSum=1.746;DP=110;ExcessHet=0.0000;FS=4.782;MQ=60.00;MQRankSum=0;QD=5.90;ReadPosRankSum=1.1;SOR=0.357;VarDP=110 GT:AD:DP:GQ:PL:SB 1:32,31:63:17:17,0:13,19,16,15 0/1:24,23:47:99:632,0,671:7,17,9,14 +chrX 2187901 . C T 657 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=12.72;BaseQRankSum=1.585;DP=122;ExcessHet=0.0000;FS=2.329;MQ=60.00;MQRankSum=0;QD=12.72;ReadPosRankSum=0.72;SOR=0.520;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:70:65:0,70 0/1:29,25:54:99:.:687,0,775:17,12,12,13 +chrX 2189165 . G C 898 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=16.00;BaseQRankSum=-0.511;DP=124;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=16.00;ReadPosRankSum=-0.469;SOR=0.618;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:70:65:0,70 0/1:23,35:58:99:.:928,0,559:10,13,16,19 +chrX 2189219 . G A 868 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=15.48;BaseQRankSum=-1.142;DP=125;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=15.48;ReadPosRankSum=0.008;SOR=0.791;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:70:65:0,70 0/1:26,32:58:99:.:898,0,719:12,14,14,18 +chrX 2189288 . C A 1009 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=17.03;BaseQRankSum=-0.494;DP=129;ExcessHet=0.0000;FS=0.981;MQ=60.00;MQRankSum=0;QD=17.03;ReadPosRankSum=0.783;SOR=0.859;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:70:65:0,70 0/1:24,37:61:99:.:1039,0,600:12,12,17,20 +chrX 2189325 . ATTT A,ATTTT,ATTTTT 676.97 . AC=1,0,2;AF=0.333,0.00,0.667;AN=3;AS_AltDP=20,2,30;AS_QD=5.15,0.75,15.50;BaseQRankSum=-0.469;DP=110;ExcessHet=0.0000;FS=20.311;MQ=59.43;MQRankSum=0;QD=12.34;ReadPosRankSum=-0.694;SOR=0.608;VarDP=58 GT:AD:DP:GQ:PL:SB 3:1,12,2,15:30:99:242,325,236,0:1,0,12,17 1/3:5,8,0,15:28:99:474,340,701,553,585,845,158,0,332,365:5,0,10,13 +chrX 2190291 . G GA 897.97 . AC=2;AF=0.667;AN=3;AS_AltDP=70;AS_QD=6.84;BaseQRankSum=-0.606;DP=149;ExcessHet=0.0000;FS=7.660;MQ=59.95;MQRankSum=1.099;QD=6.84;ReadPosRankSum=1.262;SOR=0.540;VarDP=137 GT:AD:DP:GQ:PL:SB 1:29,33:62:89:89,0:16,13,15,18 0/1:38,37:75:99:848,0,907:24,14,18,19 +chrX 2190441 . A C 659 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=10.44;BaseQRankSum=-0.508;DP=127;ExcessHet=0.0000;FS=0.946;MQ=60.00;MQRankSum=0;QD=10.44;ReadPosRankSum=-0.342;SOR=0.518;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:99:60:0,292 0/1:37,29:66:99:.:689,0,987:16,21,14,15 +chrX 2191519 . T C 974 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=9.56;BaseQRankSum=-0.627;DP=108;ExcessHet=0.0000;FS=3.597;MQ=60.00;MQRankSum=0;QD=9.56;ReadPosRankSum=0.54;SOR=0.889;VarDP=105 GT:AD:DP:GQ:PL:SB 1:23,28:51:99:139,0:9,14,17,11 0/1:23,31:54:99:865,0,627:13,10,16,15 +chrX 2191810 . A G 1142 . AC=2;AF=0.667;AN=3;AS_AltDP=75;AS_QD=8.25;BaseQRankSum=-0.89;DP=148;ExcessHet=0.0000;FS=0.617;MQ=59.97;MQRankSum=0;QD=8.25;ReadPosRankSum=-0.559;SOR=0.628;VarDP=142 GT:AD:DP:GQ:PL:SB 1:33,48:81:99:482,0:17,16,28,20 0/1:34,27:61:99:690,0,969:19,15,11,16 +chrX 2192122 . C A,CA 452 . AC=0,2;AF=0.00,0.667;AN=3;AS_AltDP=2,43;AS_QD=0.00,6.10;BaseQRankSum=-0.972;DP=115;ExcessHet=0.0000;FS=0.850;MQ=60.00;MQRankSum=0;QD=5.95;ReadPosRankSum=-0.692;SOR=0.521;VarDP=81 GT:AD:DP:GQ:PL:SB 2:19,2,18:39:61:61,887,0:11,8,11,9 0/2:17,0,25:42:99:421,472,823,0,351,277:10,7,13,12 +chrX 2193129 . T C 1045 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=10.24;BaseQRankSum=0.084;DP=112;ExcessHet=0.0000;FS=1.582;MQ=60.00;MQRankSum=0;QD=10.24;ReadPosRankSum=1.511;SOR=0.579;VarDP=105 GT:AD:DP:GQ:PL:SB 1:18,29:47:99:291,0:6,12,13,16 0/1:28,30:58:99:784,0,729:15,13,17,13 +chrX 2193159 . C G 587 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=10.46;BaseQRankSum=1.091;DP=112;ExcessHet=0.0000;FS=3.565;MQ=60.00;MQRankSum=0;QD=10.46;ReadPosRankSum=0.299;SOR=0.513;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:52:99:52:0,283 0/1:34,25:59:99:.:617,0,859:20,14,12,13 +chrX 2193915 . C CATCT 1086.97 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=10.14;BaseQRankSum=0.205;DP=130;ExcessHet=0.0000;FS=5.943;MQ=60.00;MQRankSum=0;QD=10.14;ReadPosRankSum=-0.105;SOR=0.349;VarDP=111 GT:AD:DP:GQ:PL:SB 1:23,28:51:99:210,0:12,11,12,16 0/1:35,25:60:99:916,0,1341:25,10,16,9 +chrX 2193960 . T G 515 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=10.28;BaseQRankSum=-0.974;DP=125;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=10.28;ReadPosRankSum=0.09;SOR=0.806;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:11:66:0,11 0/1:30,23:53:99:.:545,0,814:20,10,16,7 +chrX 2194098 . A C 716 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=14.63;BaseQRankSum=2.089;DP=115;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.63;ReadPosRankSum=2.065;SOR=0.693;VarDP=51 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:99:63:.:.:0,138 0|1:31,20:51:99:.:0|1:2194098_A_C:746,0,1231:2194098:17,14,11,9 +chrX 2194100 . CTATT C 701.97 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=13.98;BaseQRankSum=1.127;DP=120;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.98;ReadPosRankSum=2.001;SOR=0.704;VarDP=53 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:99:63:.:.:0,138 0|1:33,20:53:99:.:0|1:2194098_A_C:741,0,1292:2194098:18,15,11,9 +chrX 2194267 . C G 1261 . AC=2;AF=0.667;AN=3;AS_AltDP=67;AS_QD=10.94;BaseQRankSum=0.463;DP=120;ExcessHet=0.0000;FS=8.606;MQ=60.00;MQRankSum=0;QD=10.94;ReadPosRankSum=-0.422;SOR=1.040;VarDP=118 GT:AD:DP:GQ:PL:SB 1:22,36:58:99:446,0:14,8,20,16 0/1:29,31:60:99:845,0,767:9,20,20,11 +chrX 2194301 . G C 1184 . AC=2;AF=0.667;AN=3;AS_AltDP=67;AS_QD=10.03;BaseQRankSum=-0.7;DP=123;ExcessHet=0.0000;FS=3.322;MQ=60.00;MQRankSum=0;QD=10.03;ReadPosRankSum=-0.361;SOR=0.610;VarDP=121 GT:AD:DP:GQ:PL:SB 1:22,34:56:99:367,0:14,8,17,17 0/1:32,33:65:99:847,0,872:10,22,18,15 +chrX 2194328 . A G 1234 . AC=2;AF=0.667;AN=3;AS_AltDP=69;AS_QD=10.11;BaseQRankSum=-2.059;DP=132;ExcessHet=0.0000;FS=2.266;MQ=60.00;MQRankSum=0;QD=10.11;ReadPosRankSum=0.3;SOR=0.910;VarDP=125 GT:AD:DP:GQ:PL:SB 1:21,35:56:99:380,0:15,6,19,16 0/1:35,34:69:99:884,0,988:13,22,19,15 +chrX 2194409 . C T 1584 . AC=2;AF=0.667;AN=3;AS_AltDP=78;AS_QD=11.45;BaseQRankSum=1.569;DP=143;ExcessHet=0.0000;FS=3.952;MQ=60.00;MQRankSum=0;QD=11.45;ReadPosRankSum=0.457;SOR=0.953;VarDP=141 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:37,44:81:99:.:.:295,0:.:20,17,20,24 0|1:26,34:60:99:0|1:2194409_C_T:1319,0,968:2194409:12,14,14,20 +chrX 2194416 . TTA T 1553.97 . AC=2;AF=0.667;AN=3;AS_AltDP=78;AS_QD=11.38;BaseQRankSum=1.188;DP=142;ExcessHet=0.0000;FS=4.032;MQ=60.00;MQRankSum=0;QD=11.38;ReadPosRankSum=-0.324;SOR=0.821;VarDP=140 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:38,44:82:99:.:.:269,0:.:21,17,21,23 0|1:24,34:58:99:0|1:2194409_C_T:1324,0,905:2194409:12,12,14,20 +chrX 2194543 . T G 1214 . AC=2;AF=0.667;AN=3;AS_AltDP=69;AS_QD=10.03;BaseQRankSum=0.34;DP=127;ExcessHet=0.0000;FS=2.298;MQ=60.00;MQRankSum=0;QD=10.03;ReadPosRankSum=-0.102;SOR=0.921;VarDP=124 GT:AD:DP:GQ:PL:SB 1:27,37:64:99:348,0:10,17,24,13 0/1:28,32:60:99:896,0,793:19,9,16,16 +chrX 2195067 . G C 537 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=9.61;BaseQRankSum=-0.114;DP=131;ExcessHet=0.0000;FS=1.025;MQ=60.00;MQRankSum=0;QD=9.61;ReadPosRankSum=1.113;SOR=0.892;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:69:80:69:0,80 0/1:37,22:59:99:.:567,0,1078:20,17,13,9 +chrX 2195750 . A C 3426 . AC=3;AF=1.00;AN=3;AS_AltDP=106;AS_QD=32.60;DP=108;ExcessHet=0.0000;FS=0.000;MQ=59.96;QD=32.60;SOR=1.189;VarDP=106 GT:AD:DP:GQ:PL:SB 1:0,52:52:99:1747,0:0,0,17,35 1/1:0,54:54:99:1709,161,0:0,0,25,29 +chrX 2195778 . T TTTTC 511.97 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=11.48;BaseQRankSum=-3.218;DP=130;ExcessHet=0.0000;FS=2.541;MQ=60.00;MQRankSum=0;QD=11.48;ReadPosRankSum=-0.542;SOR=0.549;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:72:99:72:0,1125 0/1:29,19:48:99:.:551,0,886:17,12,9,10 +chrX 2195790 . C CTTT 797.97 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=18.20;BaseQRankSum=0.645;DP=125;ExcessHet=0.0000;FS=2.593;MQ=60.00;MQRankSum=0;QD=18.20;ReadPosRankSum=0.871;SOR=1.041;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:72:99:72:0,1125 0/1:19,27:46:99:.:837,0,577:9,10,16,11 +chrX 2196428 . G A 4173 . AC=3;AF=1.00;AN=3;AS_AltDP=126;AS_QD=33.36;DP=128;ExcessHet=0.0000;FS=0.000;MQ=59.80;QD=33.36;SOR=0.862;VarDP=126 GT:AD:DP:GQ:PL:SB 1:0,65:65:99:2218,0:0,0,28,37 1/1:0,61:61:99:1985,183,0:0,0,30,31 +chrX 2196906 . AT A 58.97 . AC=1;AF=0.333;AN=3;AS_AltDP=8;AS_QD=6.53;BaseQRankSum=-1.426;DP=111;ExcessHet=0.0000;FS=9.249;MQ=58.53;MQRankSum=-0.623;QD=6.53;ReadPosRankSum=-0.565;SOR=0.847;VarDP=15 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,585 0/1:7,8:15:89:.:98,0,89:6,1,3,5 +chrX 2197083 . G A 713 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=12.38;BaseQRankSum=-0.896;DP=126;ExcessHet=0.0000;FS=11.872;MQ=60.00;MQRankSum=0;QD=12.38;ReadPosRankSum=1.192;SOR=0.392;VarDP=60 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:64:99:64:.:.:0,585 0|1:32,28:60:99:.:0|1:2197083_G_A:743,0,1217:2197083:9,23,15,13 +chrX 2197090 . T G 1191 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=12.09;BaseQRankSum=0.712;DP=103;ExcessHet=0.0000;FS=11.654;MQ=60.00;MQRankSum=0;QD=12.09;ReadPosRankSum=-1.216;SOR=1.345;VarDP=101 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:15,28:43:99:.:.:458,0:.:8,7,13,15 0|1:27,31:58:99:1|0:2197083_G_A:763,0,1029:2197083:15,12,8,23 +chrX 2197413 . CT C 473.97 . AC=2;AF=0.667;AN=3;AS_AltDP=42;AS_QD=5.83;BaseQRankSum=1.186;DP=116;ExcessHet=0.0000;FS=0.000;MQ=59.81;MQRankSum=1.216;QD=5.83;ReadPosRankSum=0.978;SOR=0.709;VarDP=88 GT:AD:DP:GQ:PL:SB 1:17,22:39:99:138,0:8,9,12,10 0/1:29,20:49:99:375,0,603:17,12,11,9 +chrX 2197891 . A T,G 4176 . AC=0,3;AF=0.00,1.00;AN=3;AS_AltDP=6,125;AS_QD=0.00,33.65;DP=158;ExcessHet=0.0000;FS=0.000;MQ=58.03;QD=32.11;SOR=0.739;VarDP=131 GT:AD:DP:GQ:PL:SB 2:0,6,65:71:99:2224,2617,0:0,0,35,36 2/2:0,0,60:60:99:1982,1982,1982,180,180,0:0,0,32,28 +chrX 2198075 . T C 4634 . AC=3;AF=1.00;AN=3;AS_AltDP=145;AS_QD=32.17;DP=150;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.17;SOR=0.854;VarDP=145 GT:AD:DP:GQ:PL:SB 1:0,65:65:99:2134,0:0,0,30,35 1/1:0,80:80:99:2530,240,0:0,0,37,43 +chrX 2198239 . T C 3426 . AC=3;AF=1.00;AN=3;AS_AltDP=107;AS_QD=32.30;DP=111;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.30;SOR=0.830;VarDP=107 GT:AD:DP:GQ:PL:SB 1:0,64:64:99:2052,0:0,0,28,36 1/1:0,43:43:99:1404,129,0:0,0,22,21 +chrX 2198372 . A G 3990 . AC=3;AF=1.00;AN=3;AS_AltDP=125;AS_QD=32.16;DP=125;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.16;SOR=0.882;VarDP=125 GT:AD:DP:GQ:PL:SB 1:0,66:66:99:2126,0:0,0,26,40 1/1:0,59:59:99:1894,177,0:0,0,31,28 +chrX 2198498 . T C 4952 . AC=3;AF=1.00;AN=3;AS_AltDP=116;AS_QD=29.84;DP=118;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=42.95;SOR=0.763;VarDP=116 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,58:58:99:.:.:2487,0:.:0,0,32,26 1|1:0,58:58:99:0|1:2198498_T_C:2495,175,0:2198498:0,0,24,34 +chrX 2198521 . A G 5129 . AC=3;AF=1.00;AN=3;AS_AltDP=116;AS_QD=32.25;DP=117;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.47;SOR=0.763;VarDP=116 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,58:58:99:.:.:2600,0:.:0,0,34,24 1|1:0,58:58:99:0|1:2198498_T_C:2559,175,0:2198498:0,0,26,32 +chrX 2198522 . A T 5034 . AC=3;AF=1.00;AN=3;AS_AltDP=113;AS_QD=25.64;DP=115;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.81;SOR=0.784;VarDP=113 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,57:57:99:.:.:2565,0:.:0,0,34,23 1|1:0,56:56:99:0|1:2198498_T_C:2499,169,0:2198498:0,0,25,31 +chrX 2199008 . C CCA 3935.97 . AC=3;AF=1.00;AN=3;AS_AltDP=91;AS_QD=28.70;DP=96;ExcessHet=0.0000;FS=0.000;MQ=59.30;QD=43.68;SOR=0.906;VarDP=91 GT:AD:DP:GQ:PL:SB 1:0,38:38:99:1620,0:0,0,17,21 1/1:0,53:53:99:2355,159,0:0,0,24,29 +chrX 2199123 . C T 910 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=17.41;BaseQRankSum=-1.449;DP=100;ExcessHet=0.0000;FS=1.124;MQ=58.64;MQRankSum=0.05;QD=17.41;ReadPosRankSum=-1.331;SOR=0.437;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:49:64:46:0,64 0/1:18,36:54:99:.:940,0,415:7,11,17,19 +chrX 2199146 . T C 4247 . AC=3;AF=1.00;AN=3;AS_AltDP=101;AS_QD=31.22;DP=101;ExcessHet=0.0000;FS=0.000;MQ=57.83;QD=42.35;SOR=0.725;VarDP=101 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,46:46:99:.:.:1874,0:.:0,0,3,3 1|1:0,55:55:99:0|1:2199146_T_C:2403,166,0:2199146:0,0,27,28 +chrX 2199184 . G C 3851 . AC=3;AF=1.00;AN=3;AS_AltDP=90;AS_QD=33.21;DP=90;ExcessHet=0.0000;FS=0.000;MQ=58.72;QD=43.12;SOR=0.754;VarDP=90 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,39:39:99:.:.:1673,0:.:0,0,9,6 1|1:0,51:51:99:0|1:2199146_T_C:2208,153,0:2199146:0,0,25,26 +chrX 2199186 . C T 3851 . AC=3;AF=1.00;AN=3;AS_AltDP=90;AS_QD=25.28;DP=94;ExcessHet=0.0000;FS=0.000;MQ=58.78;QD=43.12;SOR=0.754;VarDP=90 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,39:39:99:.:.:1673,0:.:0,0,9,6 1|1:0,51:51:99:0|1:2199146_T_C:2208,153,0:2199146:0,0,25,26 +chrX 2199308 . C T 2189 . AC=3;AF=1.00;AN=3;AS_AltDP=75;AS_QD=27.40;BaseQRankSum=3.604;DP=85;ExcessHet=0.0000;FS=6.926;MQ=58.54;MQRankSum=2.036;QD=27.40;ReadPosRankSum=0.302;SOR=0.152;VarDP=81 GT:AD:DP:GQ:PL:SB 1:2,31:33:99:900,0:0,2,16,15 1/1:4,44:48:89:1319,89,0:1,3,22,22 +chrX 2199414 . T C 5814 . AC=3;AF=1.00;AN=3;AS_AltDP=131;AS_QD=26.97;DP=135;ExcessHet=0.0000;FS=0.000;MQ=58.89;QD=44.61;SOR=0.838;VarDP=131 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,67:67:99:.:.:2975,0:.:0,0,35,32 1|1:0,64:64:99:0|1:2199414_T_C:2869,193,0:2199414:0,0,26,38 +chrX 2199415 . G A 5814 . AC=3;AF=1.00;AN=3;AS_AltDP=131;AS_QD=31.48;DP=136;ExcessHet=0.0000;FS=0.000;MQ=58.90;QD=44.61;SOR=0.838;VarDP=131 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,67:67:99:.:.:2975,0:.:0,0,35,32 1|1:0,64:64:99:0|1:2199414_T_C:2869,193,0:2199414:0,0,26,38 +chrX 2199563 . C T 4122 . AC=3;AF=1.00;AN=3;AS_AltDP=127;AS_QD=32.69;DP=130;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.69;SOR=0.709;VarDP=127 GT:AD:DP:GQ:PL:SB 1:0,68:68:99:2228,0:0,0,29,39 1/1:0,59:59:99:1924,177,0:0,0,34,25 +chrX 2199634 . GT G 5605.97 . AC=3;AF=1.00;AN=3;AS_AltDP=126;AS_QD=27.05;DP=133;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.80;SOR=0.791;VarDP=126 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,63:63:99:.:.:2810,0:.:0,0,36,27 1|1:0,63:63:99:0|1:2199634_GT_G:2835,190,0:2199634:0,0,30,33 +chrX 2199636 . G GCC 5605.97 . AC=3;AF=1.00;AN=3;AS_AltDP=126;AS_QD=29.88;DP=131;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.80;SOR=0.791;VarDP=126 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,63:63:99:.:.:2810,0:.:0,0,36,27 1|1:0,63:63:99:0|1:2199634_GT_G:2835,190,0:2199634:0,0,30,33 +chrX 2199845 . C T 915 . AC=3;AF=1.00;AN=3;AS_AltDP=23;AS_QD=30.84;BaseQRankSum=2.281;DP=139;ExcessHet=0.0000;FS=0.000;MQ=59.98;MQRankSum=3.753;QD=39.38;ReadPosRankSum=-1.451;SOR=0.340;VarDP=24 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,12:13:99:.:.:486,0:.:1,0,7,5 1|1:0,11:11:39:0|1:2199845_C_T:459,39,0:2199845:0,0,6,5 +chrX 2199848 . ATCTCTGCTAAAAATAAACATTAAAAAATGTTTTATGTTTGAGATAGGGTGTGGTGGTGTGCACCTGTAGATGTAGTGAGATCCCCG A,GTCTCTGCTAAAAATAAACATTAAAAAATGTTTTATGTTTGAGATAGGGTGTGGTGGTGTGCACCTGTAGATGTAGTGAGATCCCCG 4347 . AC=0,3;AF=0.00,1.00;AN=3;AS_AltDP=0,65;AS_QD=34.73,27.70;BaseQRankSum=1.967;DP=192;ExcessHet=0.0000;FS=0.000;MQ=59.89;MQRankSum=5.834;QD=66.32;ReadPosRankSum=-1.472;SOR=0.322;VarDP=66 GT:AD:DP:GQ:PL:SB 2:1,0,32:33:99:2211,3175,0:1,0,17,15 2/2:0,0,33:33:99:2166,1539,3037,168,191,0:0,0,19,14 +chrX 2199872 . AAAAT *,A 3796.97 . AC=0,3;AF=0.00,1.00;AN=3;AS_AltDP=0,53;AS_QD=0.00,27.75;BaseQRankSum=0;DP=162;ExcessHet=0.0000;FS=0.000;MQ=59.87;MQRankSum=5.295;QD=71.04;ReadPosRankSum=-1.401;SOR=0.271;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 2:1,0,26:27:99:.:.:1939,2580,0:.:1,0,12,14 2|2:0,0,27:27:99:0|1:2199845_C_T:1897,1297,2484,145,149,0:2199845:0,0,16,11 +chrX 2199934 . G *,A 4303 . AC=0,3;AF=0.00,1.00;AN=3;AS_AltDP=0,65;AS_QD=28.74,32.77;DP=125;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=66.66;SOR=0.925;VarDP=65 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 2:0,0,32:32:99:.:.:2195,1897,0:.:0,0,17,15 2|2:0,0,33:33:99:0|1:2199845_C_T:2138,1428,1827,157,112,0:2199845:0,0,19,14 +chrX 2199992 . G A 5501 . AC=3;AF=1.00;AN=3;AS_AltDP=139;AS_QD=24.73;DP=140;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=39.79;SOR=1.076;VarDP=139 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,77:77:99:.:.:3068,0:.:0,0,46,31 1|1:0,62:62:99:0|1:2199845_C_T:2463,186,0:2199845:0,0,35,27 +chrX 2200819 . G A 3535 . AC=3;AF=1.00;AN=3;AS_AltDP=113;AS_QD=31.27;BaseQRankSum=2.461;DP=120;ExcessHet=0.0000;FS=0.000;MQ=59.96;MQRankSum=0;QD=31.27;ReadPosRankSum=1.449;SOR=0.245;VarDP=114 GT:AD:DP:GQ:PL:SB 1:1,60:61:99:1920,0:0,1,26,34 1/1:0,53:53:99:1645,158,0:0,0,29,24 +chrX 2201168 . A G 2877 . AC=3;AF=1.00;AN=3;AS_AltDP=91;AS_QD=31.95;DP=93;ExcessHet=0.0000;FS=0.000;MQ=59.58;QD=31.95;SOR=0.959;VarDP=91 GT:AD:DP:GQ:PL:SB 1:0,49:49:99:1517,0:0,0,26,23 1/1:0,42:42:99:1390,126,0:0,0,25,17 +chrX 2201296 . C CA,A,CAA 1680 . AC=1,0,2;AF=0.333,0.00,0.667;AN=3;AS_AltDP=27,7,37;AS_QD=26.98,0.00,22.35;DP=110;ExcessHet=0.0000;FS=0.000;MQ=59.24;QD=24.08;SOR=0.721;VarDP=71 GT:AD:DP:GQ:PL:SB 3:0,13,7,18:38:99:789,185,1161,0:0,0,18,20 1/3:0,14,0,19:33:99:921,404,295,812,388,762,283,0,281,207:0,0,18,15 +chrX 2201420 . A G 5148 . AC=3;AF=1.00;AN=3;AS_AltDP=121;AS_QD=32.64;DP=123;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=42.79;SOR=1.052;VarDP=121 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,68:68:99:.:.:2945,0:.:0,0,44,24 1|1:0,53:53:99:0|1:2201420_A_G:2233,159,0:2201420:0,0,26,27 +chrX 2201442 . A C 5310 . AC=3;AF=1.00;AN=3;AS_AltDP=125;AS_QD=27.90;DP=128;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=42.72;SOR=1.039;VarDP=125 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,75:75:99:.:.:3186,0:.:0,0,48,27 1|1:0,50:50:99:0|1:2201420_A_G:2154,150,0:2201420:0,0,24,26 +chrX 2201974 . A ATGTGTG 1957.97 . AC=3;AF=1.00;AN=3;AS_AltDP=45;AS_QD=28.13;DP=115;ExcessHet=0.0000;FS=0.000;MQ=58.93;QD=44.38;SOR=1.154;VarDP=45 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,23:23:99:.:.:1017,0:.:0,0,9,14 1|1:0,22:22:67:0|1:2201974_A_ATGTGTG:980,67,0:2201974:0,0,9,13 +chrX 2201991 . G T 335 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=8.49;BaseQRankSum=0.802;DP=103;ExcessHet=0.0000;FS=0.000;MQ=58.71;MQRankSum=-1.8;QD=8.49;ReadPosRankSum=2.771;SOR=0.859;VarDP=43 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:47:99:47:.:.:0,571 0|1:32,11:43:99:.:0|1:2201974_A_ATGTGTG:365,0,1300:2201974:16,16,5,6 +chrX 2201998 . A ATGTGTATATATATAT,ATGTGTATATATATATAT 1420.97 . AC=1,2;AF=0.333,0.667;AN=3;AS_AltDP=28,31;AS_QD=25.29,27.74;DP=110;ExcessHet=0.0000;FS=0.000;MQ=58.98;QD=24.75;SOR=0.726;VarDP=59 GT:AD:DP:GQ:PL:SB 2:0,13,18:31:99:376,264,0:0,0,14,17 1/2:0,15,13:28:99:1084,488,738,600,0,1103:0,0,15,13 +chrX 2202000 . G GAT 526.97 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=17.69;BaseQRankSum=-0.033;DP=105;ExcessHet=0.0000;FS=0.000;MQ=58.69;MQRankSum=0.953;QD=17.69;ReadPosRankSum=0.738;SOR=0.706;VarDP=32 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:50:99:50:.:.:0,1242 0|1:17,15:32:99:.:0|1:2202000_G_GAT:566,0,671:2202000:9,8,8,7 +chrX 2202004 . TAG T 609.97 . AC=1;AF=0.500;AN=2;AS_AltDP=17;AS_QD=17.08;BaseQRankSum=-0.1;DP=102;ExcessHet=0.0000;FS=0.000;MQ=58.52;MQRankSum=-1.244;QD=17.08;ReadPosRankSum=0.373;SOR=0.836;VarDP=38 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB .:.:54:0:53:.:.:0,0 0|1:21,17:38:99:.:1|0:2202000_G_GAT:649,0,825:2202000:8,8,7,6 +chrX 2202006 . G *,GGAT 1504.97 . AC=1,1;AF=0.500,0.500;AN=2;AS_AltDP=17,15;AS_QD=0.00,34.42;DP=101;ExcessHet=0.0000;FS=0.000;MQ=58.49;QD=48.25;SOR=0.818;VarDP=32 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB .:.:54:0:53:.:.:0,0,0 1|2:0,17,15:32:99:.:0|1:2202000_G_GAT:1544,636,616,728,0,667:2202000:0,0,17,15 +chrX 2202010 . G GGAT 608.97 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=17.05;BaseQRankSum=-1.782;DP=100;ExcessHet=0.0000;FS=0.000;MQ=58.49;MQRankSum=-1.007;QD=17.05;ReadPosRankSum=0.904;SOR=0.764;VarDP=38 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:52:5:52:.:.:0,5 0|1:21,17:38:99:.:1|0:2202000_G_GAT:648,0,828:2202000:10,11,7,6 +chrX 2202152 . C T 3140 . AC=3;AF=1.00;AN=3;AS_AltDP=95;AS_QD=33.02;BaseQRankSum=2.443;DP=103;ExcessHet=0.0000;FS=3.388;MQ=59.40;MQRankSum=-0.165;QD=33.02;ReadPosRankSum=1.533;SOR=0.531;VarDP=96 GT:AD:DP:GQ:PL:SB 1:1,51:52:99:1661,0:1,0,27,24 1/1:0,44:44:99:1509,132,0:0,0,16,28 +chrX 2202488 . C A 2940 . AC=3;AF=1.00;AN=3;AS_AltDP=97;AS_QD=30.31;BaseQRankSum=1.938;DP=100;ExcessHet=0.0000;FS=0.000;MQ=59.82;MQRankSum=-0.099;QD=30.31;ReadPosRankSum=1.504;SOR=0.608;VarDP=98 GT:AD:DP:GQ:PL:SB 1:1,52:53:99:1497,0:1,0,32,20 1/1:0,45:45:99:1473,135,0:0,0,31,14 +chrX 2202556 . T C 4559 . AC=3;AF=1.00;AN=3;AS_AltDP=102;AS_QD=25.31;DP=102;ExcessHet=0.0000;FS=0.000;MQ=59.82;QD=44.99;SOR=0.905;VarDP=102 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,45:45:99:.:.:2024,0:.:0,0,22,23 1|1:0,57:57:99:0|1:2202556_T_C:2565,172,0:2202556:0,0,24,33 +chrX 2202557 . G A 4644 . AC=3;AF=1.00;AN=3;AS_AltDP=104;AS_QD=32.44;DP=104;ExcessHet=0.0000;FS=0.000;MQ=59.83;QD=44.94;SOR=0.856;VarDP=104 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,46:46:99:.:.:2069,0:.:0,0,23,23 1|1:0,58:58:99:0|1:2202556_T_C:2605,175,0:2202556:0,0,25,33 +chrX 2202580 . A AT 823.97 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=7.92;BaseQRankSum=1.545;DP=119;ExcessHet=0.0000;FS=0.712;MQ=59.96;MQRankSum=1.129;QD=7.92;ReadPosRankSum=0.837;SOR=0.731;VarDP=109 GT:AD:DP:GQ:PL:SB 1:22,26:48:99:133,0:13,9,14,12 0/1:31,30:61:99:730,0,845:14,17,13,17 +chrX 2202581 . A AAT,AT 4125.97 . AC=1,2;AF=0.333,0.667;AN=3;AS_AltDP=53,56;AS_QD=26.61,32.43;DP=119;ExcessHet=0.0000;FS=0.000;MQ=59.96;QD=38.21;SOR=0.711;VarDP=109 GT:AD:DP:GQ:PL:SB 2:0,22,26:48:99:1558,133,0:0,0,27,21 1/2:0,31,30:61:99:2607,914,730,1009,0,845:0,0,27,34 +chrX 2202704 . G GTATA 1126.97 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=13.10;BaseQRankSum=1.894;DP=115;ExcessHet=0.0000;FS=1.755;MQ=59.96;MQRankSum=0;QD=13.10;ReadPosRankSum=0.916;SOR=0.501;VarDP=89 GT:AD:DP:GQ:PL:SB 1:23,24:47:99:118,0:16,7,13,11 0/1:14,28:42:99:1048,0,482:6,8,15,13 +chrX 2202896 . C T 3706 . AC=3;AF=1.00;AN=3;AS_AltDP=115;AS_QD=32.49;DP=119;ExcessHet=0.0000;FS=0.000;MQ=59.89;QD=32.49;SOR=0.941;VarDP=115 GT:AD:DP:GQ:PL:SB 1:0,51:51:99:1698,0:0,0,19,32 1/1:0,64:64:99:2038,192,0:0,0,32,32 +chrX 2203037 . C T 581 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=5.71;BaseQRankSum=2.606;DP=113;ExcessHet=0.0000;FS=6.208;MQ=59.96;MQRankSum=0;QD=5.71;ReadPosRankSum=0.363;SOR=1.332;VarDP=107 GT:AD:DP:GQ:PL:SB 1:27,27:54:80:80,0:10,17,18,9 0/1:29,24:53:99:531,0,781:19,10,15,9 +chrX 2203040 . G GATC 4646.97 . AC=3;AF=1.00;AN=3;AS_AltDP=107;AS_QD=29.14;DP=113;ExcessHet=0.0000;FS=0.000;MQ=59.96;QD=43.79;SOR=1.008;VarDP=107 GT:AD:DP:GQ:PL:SB 1:0,56:56:99:2437,0:0,0,27,29 1/1:0,51:51:99:2249,153,0:0,0,34,17 +chrX 2203093 . C T 3710 . AC=3;AF=1.00;AN=3;AS_AltDP=116;AS_QD=31.97;BaseQRankSum=-0.449;DP=121;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=31.97;ReadPosRankSum=0.619;SOR=0.380;VarDP=117 GT:AD:DP:GQ:PL:SB 1:1,55:56:99:1766,0:0,1,17,38 1/1:0,61:61:99:1974,183,0:0,0,32,29 +chrX 2203238 . A T 2937 . AC=3;AF=1.00;AN=3;AS_AltDP=87;AS_QD=34.10;DP=88;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=34.10;SOR=1.153;VarDP=87 GT:AD:DP:GQ:PL:SB 1:0,37:37:99:1261,0:0,0,16,21 1/1:0,50:50:99:1706,150,0:0,0,19,31 +chrX 2203291 . C T 3023 . AC=3;AF=1.00;AN=3;AS_AltDP=91;AS_QD=33.55;DP=97;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.55;SOR=0.715;VarDP=91 GT:AD:DP:GQ:PL:SB 1:0,38:38:99:1253,0:0,0,20,18 1/1:0,53:53:99:1800,159,0:0,0,26,27 +chrX 2203323 . C T 856 . AC=2;AF=0.667;AN=3;AS_AltDP=46;AS_QD=9.84;BaseQRankSum=-0.789;DP=93;ExcessHet=0.0000;FS=1.701;MQ=60.00;MQRankSum=0;QD=9.84;ReadPosRankSum=-0.481;SOR=0.526;VarDP=90 GT:AD:DP:GQ:PL:SB 1:15,21:36:99:199,0:9,6,13,8 0/1:29,25:54:99:687,0,845:17,12,12,13 +chrX 2203387 . T C 3434 . AC=3;AF=1.00;AN=3;AS_AltDP=111;AS_QD=31.21;DP=116;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.21;SOR=0.786;VarDP=111 GT:AD:DP:GQ:PL:SB 1:0,57:57:99:1794,0:0,0,31,26 1/1:0,54:54:99:1670,162,0:0,0,22,32 +chrX 2203527 . T C 2803 . AC=3;AF=1.00;AN=3;AS_AltDP=87;AS_QD=32.56;DP=91;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.56;SOR=0.763;VarDP=87 GT:AD:DP:GQ:PL:SB 1:0,46:46:99:1508,0:0,0,22,24 1/1:0,41:41:99:1325,122,0:0,0,20,21 +chrX 2203616 . C T 4192 . AC=3;AF=1.00;AN=3;AS_AltDP=135;AS_QD=31.27;DP=139;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.27;SOR=1.049;VarDP=135 GT:AD:DP:GQ:PL:SB 1:0,65:65:99:2038,0:0,0,37,28 1/1:0,70:70:99:2184,210,0:0,0,41,29 +chrX 2203672 . G A 1315 . AC=2;AF=0.667;AN=3;AS_AltDP=79;AS_QD=9.61;BaseQRankSum=-1.501;DP=143;ExcessHet=0.0000;FS=3.047;MQ=60.00;MQRankSum=0;QD=9.61;ReadPosRankSum=0.339;SOR=0.807;VarDP=140 GT:AD:DP:GQ:PL:SB 1:29,42:71:99:397,0:13,16,24,18 0/1:32,37:69:99:948,0,845:16,16,19,18 +chrX 2203722 . T C 4612 . AC=3;AF=1.00;AN=3;AS_AltDP=145;AS_QD=32.01;DP=147;ExcessHet=0.0000;FS=0.000;MQ=59.97;QD=32.01;SOR=0.764;VarDP=145 GT:AD:DP:GQ:PL:SB 1:0,74:74:99:2371,0:0,0,36,38 1/1:0,71:71:99:2271,213,0:0,0,34,37 +chrX 2203867 . A G 3923 . AC=3;AF=1.00;AN=3;AS_AltDP=125;AS_QD=31.62;DP=132;ExcessHet=0.0000;FS=0.000;MQ=59.68;QD=31.62;SOR=0.742;VarDP=125 GT:AD:DP:GQ:PL:SB 1:0,68:68:99:2228,0:0,0,35,33 1/1:0,57:57:99:1725,170,0:0,0,29,28 +chrX 2204157 . T A 4838 . AC=3;AF=1.00;AN=3;AS_AltDP=145;AS_QD=33.57;DP=152;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.57;SOR=0.707;VarDP=145 GT:AD:DP:GQ:PL:SB 1:0,81:81:99:2655,0:0,0,44,37 1/1:0,64:64:99:2213,193,0:0,0,29,35 +chrX 2204322 . G A 5367 . AC=3;AF=1.00;AN=3;AS_AltDP=131;AS_QD=26.28;BaseQRankSum=-0.427;DP=137;ExcessHet=0.0000;FS=0.000;MQ=59.25;MQRankSum=-0.189;QD=40.89;ReadPosRankSum=0.776;SOR=0.315;VarDP=132 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,66:67:99:.:.:2688,0:.:0,1,26,40 1|1:0,65:65:99:0|1:2204322_G_A:2709,195,0:2204322:0,0,33,32 +chrX 2204345 . T C 4882 . AC=3;AF=1.00;AN=3;AS_AltDP=117;AS_QD=33.69;BaseQRankSum=-0.617;DP=122;ExcessHet=0.0000;FS=0.000;MQ=59.20;MQRankSum=-0.096;QD=41.63;ReadPosRankSum=1.578;SOR=0.389;VarDP=118 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,55:56:99:.:.:2312,0:.:0,1,18,37 1|1:0,62:62:99:0|1:2204322_G_A:2600,186,0:2204322:0,0,31,31 +chrX 2204427 . T A 3148 . AC=3;AF=1.00;AN=3;AS_AltDP=92;AS_QD=34.54;DP=97;ExcessHet=0.0000;FS=0.000;MQ=59.77;QD=34.54;SOR=0.737;VarDP=92 GT:AD:DP:GQ:PL:SB 1:0,42:42:99:1450,0:0,0,21,21 1/1:0,50:50:99:1728,150,0:0,0,26,24 +chrX 2204858 . T C 3867 . AC=3;AF=1.00;AN=3;AS_AltDP=128;AS_QD=30.21;BaseQRankSum=-0.731;DP=131;ExcessHet=0.0000;FS=3.182;MQ=54.51;MQRankSum=-0.569;QD=30.21;ReadPosRankSum=1.23;SOR=0.374;VarDP=129 GT:AD:DP:GQ:PL:SB 1:1,61:62:99:1851,0:1,0,28,33 1/1:0,67:67:99:2046,201,0:0,0,33,34 +chrX 2205249 . T C 5399 . AC=3;AF=1.00;AN=3;AS_AltDP=126;AS_QD=30.09;DP=129;ExcessHet=0.0000;FS=0.000;MQ=59.96;QD=43.09;SOR=0.693;VarDP=126 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,62:62:99:.:.:2696,0:.:0,0,32,30 1|1:0,64:64:99:0|1:2205249_T_C:2733,193,0:2205249:0,0,31,33 +chrX 2205256 . C T 5303 . AC=3;AF=1.00;AN=3;AS_AltDP=123;AS_QD=31.65;DP=126;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.36;SOR=0.709;VarDP=123 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,63:63:99:.:.:2717,0:.:0,0,31,32 1|1:0,60:60:99:0|1:2205249_T_C:2616,181,0:2205249:0,0,30,30 +chrX 2205508 . G T 2901 . AC=3;AF=1.00;AN=3;AS_AltDP=91;AS_QD=32.21;DP=95;ExcessHet=0.0000;FS=0.000;MQ=59.26;QD=32.21;SOR=1.460;VarDP=91 GT:AD:DP:GQ:PL:SB 1:0,45:45:99:1459,0:0,0,31,14 1/1:0,46:46:99:1472,138,0:0,0,28,18 +chrX 2205537 . G A 3095 . AC=3;AF=1.00;AN=3;AS_AltDP=96;AS_QD=32.55;DP=102;ExcessHet=0.0000;FS=0.000;MQ=58.41;QD=32.55;SOR=1.076;VarDP=96 GT:AD:DP:GQ:PL:SB 1:0,52:52:99:1706,0:0,0,33,19 1/1:0,44:44:99:1419,132,0:0,0,23,21 +chrX 2205567 . T G 2884 . AC=3;AF=1.00;AN=3;AS_AltDP=96;AS_QD=30.35;DP=102;ExcessHet=0.0000;FS=0.000;MQ=58.29;QD=30.35;SOR=0.969;VarDP=96 GT:AD:DP:GQ:PL:SB 1:0,57:57:99:1704,0:0,0,33,24 1/1:0,39:39:99:1210,117,0:0,0,21,18 +chrX 2205614 . T C 522 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=5.52;BaseQRankSum=0.024;DP=104;ExcessHet=0.0000;FS=2.552;MQ=58.07;MQRankSum=2.415;QD=5.52;ReadPosRankSum=1.901;SOR=0.634;VarDP=100 GT:AD:DP:GQ:PL:SB 1:28,37:65:99:166,0:17,11,20,17 0/1:20,15:35:99:386,0,550:9,11,5,10 +chrX 2205718 . G A 3379 . AC=3;AF=1.00;AN=3;AS_AltDP=105;AS_QD=32.47;DP=109;ExcessHet=0.0000;FS=0.000;MQ=59.88;QD=32.47;SOR=0.751;VarDP=105 GT:AD:DP:GQ:PL:SB 1:0,61:61:99:1960,0:0,0,29,32 1/1:0,44:44:99:1449,131,0:0,0,22,22 +chrX 2205761 . C T 3011 . AC=3;AF=1.00;AN=3;AS_AltDP=96;AS_QD=31.68;DP=106;ExcessHet=0.0000;FS=0.000;MQ=59.77;QD=31.68;SOR=0.870;VarDP=96 GT:AD:DP:GQ:PL:SB 1:0,54:54:99:1732,0:0,0,22,32 1/1:0,42:42:99:1309,124,0:0,0,22,20 +chrX 2205821 . T TCAC 3442.97 . AC=3;AF=1.00;AN=3;AS_AltDP=78;AS_QD=35.29;DP=87;ExcessHet=0.0000;FS=0.000;MQ=59.61;QD=44.64;SOR=0.693;VarDP=78 GT:AD:DP:GQ:PL:SB 1:0,40:40:99:1778,0:0,0,19,21 1/1:0,38:38:99:1704,114,0:0,0,20,18 +chrX 2205870 . C T 4034 . AC=3;AF=1.00;AN=3;AS_AltDP=94;AS_QD=28.09;DP=94;ExcessHet=0.0000;FS=0.000;MQ=59.82;QD=43.23;SOR=0.736;VarDP=94 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,47:47:99:.:.:2001,0:.:0,0,24,23 1|1:0,47:47:99:0|1:2205870_C_T:2063,141,0:2205870:0,0,24,23 +chrX 2205902 . T C 4249 . AC=3;AF=1.00;AN=3;AS_AltDP=101;AS_QD=29.31;BaseQRankSum=-0.167;DP=105;ExcessHet=0.0000;FS=3.274;MQ=59.84;MQRankSum=-0.101;QD=41.95;ReadPosRankSum=1.394;SOR=0.447;VarDP=102 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,51:51:99:.:.:2136,0:.:0,0,28,23 1|1:1,50:51:99:0|1:2205870_C_T:2143,119,0:2205870:0,1,26,24 +chrX 2206057 . G A 5466 . AC=3;AF=1.00;AN=3;AS_AltDP=124;AS_QD=29.31;DP=126;ExcessHet=0.0000;FS=0.000;MQ=59.64;QD=44.32;SOR=0.759;VarDP=124 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,71:71:99:.:.:3132,0:.:0,0,33,38 1|1:0,53:53:99:0|1:2206057_G_A:2364,160,0:2206057:0,0,31,22 +chrX 2206067 . C T 5747 . AC=3;AF=1.00;AN=3;AS_AltDP=133;AS_QD=31.25;BaseQRankSum=2.431;DP=137;ExcessHet=0.0000;FS=3.278;MQ=59.67;MQRankSum=-0.083;QD=43.11;ReadPosRankSum=1.234;SOR=0.442;VarDP=134 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,73:74:99:.:.:3181,0:.:0,1,34,39 1|1:0,60:60:99:0|1:2206057_G_A:2596,181,0:2206057:0,0,37,23 +chrX 2206086 . C T 4424 . AC=3;AF=1.00;AN=3;AS_AltDP=136;AS_QD=32.75;DP=144;ExcessHet=0.0000;FS=0.000;MQ=59.80;QD=32.75;SOR=0.953;VarDP=136 GT:AD:DP:GQ:PL:SB 1:0,73:73:99:2396,0:0,0,34,39 1/1:0,63:63:99:2058,189,0:0,0,42,21 +chrX 2206153 . C T 4621 . AC=3;AF=1.00;AN=3;AS_AltDP=141;AS_QD=32.75;BaseQRankSum=2.798;DP=152;ExcessHet=0.0000;FS=3.394;MQ=59.93;MQRankSum=0;QD=32.75;ReadPosRankSum=0.724;SOR=0.525;VarDP=142 GT:AD:DP:GQ:PL:SB 1:0,75:75:99:2487,0:0,0,32,43 1/1:1,66:67:99:2164,191,0:1,0,32,34 +chrX 2206244 . A G 909 . AC=2;AF=0.667;AN=3;AS_AltDP=69;AS_QD=6.61;BaseQRankSum=-0.274;DP=155;ExcessHet=0.0000;FS=0.000;MQ=59.97;MQRankSum=1.173;QD=6.61;ReadPosRankSum=-0.246;SOR=0.696;VarDP=142 GT:AD:DP:GQ:PL:SB 1:32,42:74:99:287,0:17,15,20,22 0/1:41,27:68:99:652,0,1151:20,21,14,13 +chrX 2206296 . A C 559 . AC=2;AF=0.667;AN=3;AS_AltDP=64;AS_QD=4.12;BaseQRankSum=-2.569;DP=156;ExcessHet=0.0000;FS=2.958;MQ=59.97;MQRankSum=1.085;QD=4.12;ReadPosRankSum=0.542;SOR=0.495;VarDP=143 GT:AD:DP:GQ:PL:SB 1:34,38:72:18:18,0:20,14,18,20 0/1:45,26:71:99:571,0,1312:24,21,14,12 +chrX 2206407 . T C 3652 . AC=3;AF=1.00;AN=3;AS_AltDP=114;AS_QD=32.30;DP=134;ExcessHet=0.0000;FS=0.000;MQ=59.96;QD=32.30;SOR=0.965;VarDP=114 GT:AD:DP:GQ:PL:SB 1:0,56:56:99:1806,0:0,0,22,34 1/1:0,58:58:99:1876,174,0:0,0,28,30 +chrX 2206480 . T C 3830 . AC=3;AF=1.00;AN=3;AS_AltDP=128;AS_QD=30.16;DP=160;ExcessHet=0.0000;FS=0.000;MQ=59.88;QD=30.16;SOR=1.051;VarDP=128 GT:AD:DP:GQ:PL:SB 1:0,54:54:99:1635,0:0,0,25,29 1/1:0,74:74:99:2225,220,0:0,0,29,45 +chrX 2207097 . A G 3733 . AC=3;AF=1.00;AN=3;AS_AltDP=117;AS_QD=32.16;DP=123;ExcessHet=0.0000;FS=0.000;MQ=59.96;QD=32.16;SOR=1.208;VarDP=117 GT:AD:DP:GQ:PL:SB 1:0,71:71:99:2278,0:0,0,42,29 1/1:0,46:46:99:1485,137,0:0,0,29,17 +chrX 2207232 . CAA C,CA 1576.97 . AC=1,2;AF=0.333,0.667;AN=3;AS_AltDP=28,30;AS_QD=30.55,22.34;DP=103;ExcessHet=0.0000;FS=3.085;MQ=59.66;MQRankSum=0;QD=26.93;SOR=0.226;VarDP=60 GT:AD:DP:GQ:PL:SB 2:2,17,6:25:3:81,3,0:0,2,9,14 1/2:0,11,24:35:99:1535,624,536,310,0,183:0,0,21,14 +chrX 2207247 . A C 1946 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=26.38;DP=94;ExcessHet=0.0000;FS=0.000;MQ=59.58;QD=37.28;SOR=0.892;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:38:94:38:0,94 1/1:0,53:53:99:.:1976,158,0:0,0,29,24 +chrX 2207296 . T TGC 838.97 . AC=2;AF=0.667;AN=3;AS_AltDP=44;AS_QD=10.33;BaseQRankSum=1.115;DP=114;ExcessHet=0.0000;FS=2.866;MQ=58.90;MQRankSum=0.664;QD=10.33;ReadPosRankSum=-0.009;SOR=0.597;VarDP=85 GT:AD:DP:GQ:PL:SB 1:13,19:32:99:259,0:8,5,8,11 0/1:28,25:53:99:619,0,1079:15,13,13,12 +chrX 2207300 . T TGC 638.97 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=13.04;BaseQRankSum=0.335;DP=111;ExcessHet=0.0000;FS=0.000;MQ=58.58;MQRankSum=-0.775;QD=13.04;ReadPosRankSum=-0.907;SOR=0.560;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:39:99:39:0,945 0/1:26,26:52:99:.:678,0,939:14,12,13,13 +chrX 2207306 . T TGTGTGTGTGC,TGTGTGTGTGTGC,TGTGTGTGTGTGTGC,TGTGTGTGTGTGTGTGC,TGC,TGTGC 3678.97 . AC=2,0,0,1,0,0;AF=0.667,0.00,0.00,0.333,0.00,0.00;AN=3;AS_AltDP=37,1,0,36,0,1;AS_QD=26.53,31.89,30.16,27.83,36.15,32.28;DP=123;ExcessHet=0.0000;FS=0.000;MQ=58.98;QD=49.57;SOR=0.719;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,17,0,0,13,0,0:30:99:1188,0,598,687,218,879,879:0,0,15,15 1/4:0,20,1,0,23,0,1:45:99:2530,1282,1175,1885,1082,1787,1901,940,1487,1833,1025,0,728,956,947,1967,1172,1632,1697,761,1876,1887,869,1548,1677,984,1611,1780:0,0,22,23 +chrX 2207563 . A AT,ATT 2845.97 . AC=3,0;AF=1.00,0.00;AN=3;AS_AltDP=100,0;AS_QD=28.28,30.85;BaseQRankSum=-0.511;DP=124;ExcessHet=0.0000;FS=0.000;MQ=59.96;MQRankSum=-0.098;QD=28.28;ReadPosRankSum=-0.321;SOR=1.408;VarDP=102 GT:AD:DP:GQ:PL:SB 1:2,52,0:54:99:1424,0,1464:1,1,32,20 1/1:0,48,0:48:99:1461,156,0,1355,144,1346:0,0,32,16 +chrX 2207592 . C T 3925 . AC=3;AF=1.00;AN=3;AS_AltDP=122;AS_QD=32.42;DP=127;ExcessHet=0.0000;FS=0.000;MQ=59.96;QD=32.42;SOR=1.160;VarDP=122 GT:AD:DP:GQ:PL:SB 1:0,60:60:99:1925,0:0,0,34,26 1/1:0,62:62:99:2030,186,0:0,0,39,23 +chrX 2207652 . T C 3936 . AC=3;AF=1.00;AN=3;AS_AltDP=124;AS_QD=31.98;DP=127;ExcessHet=0.0000;FS=0.000;MQ=59.96;QD=31.98;SOR=0.725;VarDP=124 GT:AD:DP:GQ:PL:SB 1:0,65:65:99:2040,0:0,0,32,33 1/1:0,59:59:99:1926,177,0:0,0,29,30 +chrX 2207757 . G A 3867 . AC=3;AF=1.00;AN=3;AS_AltDP=116;AS_QD=33.31;BaseQRankSum=2.584;DP=121;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=33.31;ReadPosRankSum=-1.197;SOR=0.506;VarDP=117 GT:AD:DP:GQ:PL:SB 1:1,54:55:99:1807,0:0,1,25,29 1/1:0,62:62:99:2090,186,0:0,0,19,43 +chrX 2208039 . G A 522 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=13.46;BaseQRankSum=0.437;DP=100;ExcessHet=0.0000;FS=1.204;MQ=60.00;MQRankSum=0;QD=13.46;ReadPosRankSum=-1.487;SOR=0.824;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:58:99:58:0,109 0/1:21,20:41:99:.:552,0,576:10,11,11,9 +chrX 2208064 . T TCAC 982.97 . AC=2;AF=0.667;AN=3;AS_AltDP=48;AS_QD=11.23;BaseQRankSum=0.151;DP=97;ExcessHet=0.0000;FS=8.412;MQ=59.95;MQRankSum=0;QD=11.23;ReadPosRankSum=-0.629;SOR=1.232;VarDP=91 GT:AD:DP:GQ:PL:SB 1:22,25:47:99:120,0:11,11,16,9 0/1:21,23:44:99:902,0,813:9,12,14,9 +chrX 2208194 . G GA 151.97 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=5.46;BaseQRankSum=-0.156;DP=106;ExcessHet=0.0000;FS=1.451;MQ=60.00;MQRankSum=0;QD=5.46;ReadPosRankSum=1.967;SOR=0.641;VarDP=35 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:58:99:58:0,1485 0/1:24,11:35:99:.:191,0,951:10,14,6,5 +chrX 2208202 . AAAAG A 1335.97 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=14.03;BaseQRankSum=1.909;DP=108;ExcessHet=0.0000;FS=1.670;MQ=60.00;MQRankSum=0;QD=14.03;ReadPosRankSum=1.201;SOR=0.496;VarDP=98 GT:AD:DP:GQ:PL:SB 1:24,32:56:99:382,0:9,15,16,16 0/1:16,26:42:99:993,0,541:8,8,12,14 +chrX 2208248 . C T 473 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=10.27;BaseQRankSum=-1.448;DP=112;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=10.27;ReadPosRankSum=-1.819;SOR=0.648;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,115 0/1:28,21:49:99:.:503,0,761:13,15,10,11 +chrX 2208411 . A T 501 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=12.35;BaseQRankSum=2.342;DP=107;ExcessHet=0.0000;FS=2.600;MQ=60.00;MQRankSum=0;QD=12.35;ReadPosRankSum=-0.832;SOR=0.387;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,115 0/1:24,19:43:99:.:531,0,645:15,9,10,9 +chrX 2208546 . AT A 2638.97 . AC=3;AF=1.00;AN=3;AS_AltDP=95;AS_QD=27.90;BaseQRankSum=1.628;DP=110;ExcessHet=0.0000;FS=3.802;MQ=59.73;MQRankSum=0;QD=27.90;ReadPosRankSum=1.261;SOR=0.824;VarDP=96 GT:AD:DP:GQ:PL:SB 1:1,54:55:99:1515,0:1,0,19,35 1/1:0,41:41:99:1163,123,0:0,0,20,21 +chrX 2208708 . T C 815 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=8.28;BaseQRankSum=-0.19;DP=107;ExcessHet=0.0000;FS=0.000;MQ=58.96;MQRankSum=-0.414;QD=8.28;ReadPosRankSum=0.35;SOR=0.661;VarDP=102 GT:AD:DP:GQ:PL:SB 1:20,23:43:72:72,0:8,12,11,12 0/1:29,30:59:99:773,0,769:11,18,10,20 +chrX 2208791 . A C 3031 . AC=3;AF=1.00;AN=3;AS_AltDP=95;AS_QD=32.22;DP=101;ExcessHet=0.0000;FS=0.000;MQ=59.83;QD=32.22;SOR=1.289;VarDP=95 GT:AD:DP:GQ:PL:SB 1:0,43:43:99:1385,0:0,0,17,26 1/1:0,52:52:99:1676,156,0:0,0,19,33 +chrX 2208957 . C G 3976 . AC=3;AF=1.00;AN=3;AS_AltDP=103;AS_QD=28.75;DP=104;ExcessHet=0.0000;FS=0.000;MQ=59.52;QD=38.89;SOR=1.292;VarDP=103 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,52:52:99:.:.:1998,0:.:0,0,31,21 1|1:0,51:51:99:0|1:2208957_C_G:2008,153,0:2208957:0,0,33,18 +chrX 2208965 . T C 757 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=15.13;BaseQRankSum=0.265;DP=120;ExcessHet=0.0000;FS=6.106;MQ=59.88;MQRankSum=1.119;QD=15.13;ReadPosRankSum=-0.312;SOR=0.209;VarDP=52 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:65:99:65:.:.:0,194 0|1:24,28:52:99:.:0|1:2208957_C_G:787,0,631:2208957:18,6,16,12 +chrX 2209156 . C T 6153 . AC=3;AF=1.00;AN=3;AS_AltDP=142;AS_QD=32.97;DP=143;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.54;SOR=0.874;VarDP=142 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,78:78:99:.:.:3405,0:.:0,0,37,41 1|1:0,64:64:99:0|1:2209156_C_T:2778,193,0:2209156:0,0,28,36 +chrX 2209162 . TGG T 6157.97 . AC=3;AF=1.00;AN=3;AS_AltDP=142;AS_QD=29.99;DP=144;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.64;SOR=0.874;VarDP=142 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,78:78:99:.:.:3412,0:.:0,0,38,40 1|1:0,64:64:99:0|1:2209156_C_T:2785,193,0:2209156:0,0,27,37 +chrX 2209223 . AG A 767.97 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=5.68;BaseQRankSum=1.338;DP=146;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=5.68;ReadPosRankSum=0.077;SOR=0.649;VarDP=142 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:40,42:82:47:.:.:47,0:.:18,22,21,21 0|1:39,21:60:99:0|1:2209223_AG_A:760,0,1535:2209223:15,24,6,15 +chrX 2209231 . AT A 780.97 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=13.02;BaseQRankSum=1.741;DP=143;ExcessHet=0.0000;FS=1.044;MQ=60.00;MQRankSum=0;QD=13.02;ReadPosRankSum=-1.255;SOR=0.873;VarDP=63 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:79:30:76:.:.:0,30 0|1:40,23:63:99:.:0|1:2209223_AG_A:820,0,1545:2209223:14,26,7,16 +chrX 2209359 . ATT A,AT 1966.97 . AC=1,2;AF=0.333,0.667;AN=3;AS_AltDP=47,47;AS_QD=30.49,31.55;BaseQRankSum=1.946;DP=132;ExcessHet=0.0000;FS=0.000;MQ=59.80;MQRankSum=-0.204;QD=20.90;ReadPosRankSum=1.15;SOR=0.826;VarDP=96 GT:AD:DP:GQ:PL:SB 2:2,25,30:57:99:882,116,0:1,1,27,28 1/2:0,22,17:39:99:1124,396,400,568,0,460:0,0,23,16 +chrX 2209539 . G A 3870 . AC=3;AF=1.00;AN=3;AS_AltDP=115;AS_QD=33.91;DP=120;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.91;SOR=0.899;VarDP=115 GT:AD:DP:GQ:PL:SB 1:0,61:61:99:2076,0:0,0,27,34 1/1:0,54:54:99:1824,162,0:0,0,25,29 +chrX 2209570 . C T 840 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=7.07;BaseQRankSum=0.124;DP=125;ExcessHet=0.0000;FS=0.667;MQ=60.00;MQRankSum=0;QD=7.07;ReadPosRankSum=2.073;SOR=0.667;VarDP=123 GT:AD:DP:GQ:PL:SB 1:28,34:62:99:184,0:16,12,18,16 0/1:34,27:61:99:686,0,893:16,18,12,15 +chrX 2209602 . C T 3916 . AC=3;AF=1.00;AN=3;AS_AltDP=121;AS_QD=32.61;DP=123;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.61;SOR=0.710;VarDP=121 GT:AD:DP:GQ:PL:SB 1:0,67:67:99:2214,0:0,0,36,31 1/1:0,54:54:99:1732,162,0:0,0,25,29 +chrX 2210001 . C CA 591.97 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=13.72;BaseQRankSum=-1.356;DP=103;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.72;ReadPosRankSum=1.161;SOR=0.812;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:99:56:0,508 0/1:19,27:46:99:.:631,0,406:10,9,15,12 +chrX 2210208 . G A 999 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=9.19;BaseQRankSum=2.196;DP=117;ExcessHet=0.0000;FS=4.660;MQ=60.00;MQRankSum=0;QD=9.19;ReadPosRankSum=2.046;SOR=0.359;VarDP=112 GT:AD:DP:GQ:PL:SB 1:19,24:43:99:164,0:9,10,13,11 0/1:37,32:69:99:865,0,934:13,24,15,17 +chrX 2210328 . T C 677 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=6.26;BaseQRankSum=0.374;DP=117;ExcessHet=0.0000;FS=12.278;MQ=60.00;MQRankSum=0;QD=6.26;ReadPosRankSum=0.825;SOR=1.283;VarDP=113 GT:AD:DP:GQ:PL:SB 1:25,29:54:41:41,0:13,12,18,11 0/1:33,26:59:99:666,0,880:13,20,17,9 +chrX 2210749 . G A 69 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=1.71;BaseQRankSum=1.488;DP=114;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=1.71;ReadPosRankSum=-0.156;SOR=0.676;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 1:28,30:58:99:.:99,0:12,16,13,17 0/0:.:55:92:55:0,92,1364 +chrX 2210809 . C T 1017 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=9.10;BaseQRankSum=0.885;DP=118;ExcessHet=0.0000;FS=4.512;MQ=60.00;MQRankSum=0;QD=9.10;ReadPosRankSum=-0.291;SOR=0.959;VarDP=115 GT:AD:DP:GQ:PL:SB 1:27,30:57:99:124,0:13,14,12,18 0/1:25,33:58:99:923,0,650:14,11,15,18 +chrX 2210870 . C CAA 5174.97 . AC=3;AF=1.00;AN=3;AS_AltDP=117;AS_QD=28.32;DP=121;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.56;SOR=0.818;VarDP=117 GT:AD:DP:GQ:PL:SB 1:0,60:60:99:2684,0:0,0,29,31 1/1:0,57:57:99:2530,171,0:0,0,33,24 +chrX 2210963 . A G 4004 . AC=3;AF=1.00;AN=3;AS_AltDP=125;AS_QD=32.27;DP=130;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.27;SOR=0.742;VarDP=125 GT:AD:DP:GQ:PL:SB 1:0,75:75:99:2376,0:0,0,36,39 1/1:0,50:50:99:1658,150,0:0,0,25,25 +chrX 2211248 . G GATGGATGGATGA 4968.97 . AC=3;AF=1.00;AN=3;AS_AltDP=115;AS_QD=32.62;DP=132;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.55;SOR=0.899;VarDP=115 GT:AD:DP:GQ:PL:SB 1:0,66:66:99:2890,0:0,0,41,25 1/1:0,49:49:99:2118,146,0:0,0,22,27 +chrX 2211287 . G GGATGGATA 5076.97 . AC=3;AF=1.00;AN=3;AS_AltDP=115;AS_QD=26.43;DP=118;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.49;SOR=0.899;VarDP=115 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,69:69:99:.:.:3071,0:.:0,0,41,28 1|1:0,46:46:99:0|1:2211287_G_GGATGGATA:2045,138,0:2211287:0,0,22,24 +chrX 2211316 . A C 4976 . AC=3;AF=1.00;AN=3;AS_AltDP=120;AS_QD=28.69;DP=121;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=41.72;SOR=0.833;VarDP=120 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,68:68:99:.:.:2879,0:.:0,0,39,29 1|1:0,52:52:99:0|1:2211287_G_GGATGGATA:2127,156,0:2211287:0,0,25,27 +chrX 2211438 . T A 4262 . AC=3;AF=1.00;AN=3;AS_AltDP=132;AS_QD=32.52;DP=137;ExcessHet=0.0000;FS=0.000;MQ=59.85;QD=32.52;SOR=0.820;VarDP=132 GT:AD:DP:GQ:PL:SB 1:0,71:71:99:2277,0:0,0,34,37 1/1:0,61:61:99:2015,183,0:0,0,36,25 +chrX 2211503 . A G 506 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=9.57;BaseQRankSum=-2.65;DP=131;ExcessHet=0.0000;FS=5.699;MQ=60.00;MQRankSum=0;QD=9.57;ReadPosRankSum=0.571;SOR=1.609;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:99:68:0,577 0/1:34,22:56:99:.:536,0,1004:17,17,15,7 +chrX 2211565 . A G 4087 . AC=3;AF=1.00;AN=3;AS_AltDP=126;AS_QD=32.67;DP=131;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.67;SOR=1.188;VarDP=126 GT:AD:DP:GQ:PL:SB 1:0,60:60:99:1959,0:0,0,22,38 1/1:0,66:66:99:2158,197,0:0,0,28,38 +chrX 2211678 . A G 3775 . AC=3;AF=1.00;AN=3;AS_AltDP=120;AS_QD=31.71;DP=125;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.71;SOR=0.796;VarDP=120 GT:AD:DP:GQ:PL:SB 1:0,67:67:99:2133,0:0,0,33,34 1/1:0,53:53:99:1672,158,0:0,0,30,23 +chrX 2211743 . C T 583 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=11.79;BaseQRankSum=-1.442;DP=103;ExcessHet=0.0000;FS=2.379;MQ=60.00;MQRankSum=0;QD=11.79;ReadPosRankSum=-0.055;SOR=0.666;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:35:50:0,35 0/1:28,24:52:99:.:613,0,796:16,12,11,13 +chrX 2211888 . G C 1046 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=10.76;BaseQRankSum=2.667;DP=103;ExcessHet=0.0000;FS=0.000;MQ=59.91;MQRankSum=0;QD=10.76;ReadPosRankSum=-0.663;SOR=0.755;VarDP=100 GT:AD:DP:GQ:PL:SB 1:18,30:48:99:467,0:9,9,19,11 0/1:29,23:52:99:609,0,807:16,13,10,13 +chrX 2211991 . CA C 294.97 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=6.55;BaseQRankSum=1.137;DP=110;ExcessHet=0.0000;FS=6.082;MQ=57.20;MQRankSum=3.38;QD=6.55;ReadPosRankSum=-1.05;SOR=1.588;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:49:99:49:0,248 0/1:32,19:51:99:.:334,0,1202:18,14,14,5 +chrX 2212006 . AT A 1540.97 . AC=2;AF=0.667;AN=3;AS_AltDP=67;AS_QD=13.74;BaseQRankSum=-0.143;DP=118;ExcessHet=0.0000;FS=0.736;MQ=56.43;MQRankSum=-4.319;QD=13.74;ReadPosRankSum=0.706;SOR=0.600;VarDP=115 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:26,29:55:99:.:.:114,0:.:17,9,20,9 0|1:22,38:60:99:0|1:2212006_AT_A:1466,0,779:2212006:15,7,23,15 +chrX 2212019 . G A 1586 . AC=2;AF=0.667;AN=3;AS_AltDP=74;AS_QD=12.24;BaseQRankSum=0.759;DP=134;ExcessHet=0.0000;FS=0.665;MQ=56.13;MQRankSum=-5.389;QD=12.24;ReadPosRankSum=1.319;SOR=0.596;VarDP=132 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:31,33:64:90:.:.:90,0:.:19,12,20,13 0|1:27,41:68:99:0|1:2212006_AT_A:1526,0,889:2212006:17,10,24,17 +chrX 2212049 . G A 1174 . AC=2;AF=0.667;AN=3;AS_AltDP=78;AS_QD=8.92;BaseQRankSum=1.092;DP=140;ExcessHet=0.0000;FS=2.189;MQ=56.00;MQRankSum=-4.948;QD=8.92;ReadPosRankSum=-1.248;SOR=0.522;VarDP=135 GT:AD:DP:GQ:PL:SB 1:35,35:70:55:55,0:20,15,19,16 0/1:22,43:65:99:1149,0,505:12,10,21,22 +chrX 2212087 . C T 916 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=14.55;BaseQRankSum=1.265;DP=136;ExcessHet=0.0000;FS=0.000;MQ=57.18;MQRankSum=-4.727;QD=14.55;ReadPosRankSum=0.805;SOR=0.735;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:70:19:70:0,19 0/1:29,36:65:99:.:946,0,668:14,15,17,19 +chrX 2212134 . C T 930 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=15.00;BaseQRankSum=1.839;DP=141;ExcessHet=0.0000;FS=3.502;MQ=57.97;MQRankSum=-3.965;QD=15.00;ReadPosRankSum=-0.56;SOR=0.350;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:72:99:72:0,124 0/1:29,35:64:99:.:960,0,701:10,19,16,19 +chrX 2212175 . A T 997 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=8.85;BaseQRankSum=-0.196;DP=124;ExcessHet=0.0000;FS=1.489;MQ=59.83;MQRankSum=0;QD=8.85;ReadPosRankSum=0.806;SOR=0.899;VarDP=116 GT:AD:DP:GQ:PL:SB 1:23,35:58:99:318,0:11,12,14,21 0/1:32,26:58:99:709,0,910:16,16,13,13 +chrX 2212804 . A C 722 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=17.90;BaseQRankSum=-1.027;DP=108;ExcessHet=0.0000;FS=1.283;MQ=60.00;MQRankSum=0;QD=17.90;ReadPosRankSum=0.814;SOR=0.648;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,299 0/1:14,28:42:99:.:752,0,341:8,6,13,15 +chrX 2212907 . G A 821 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=18.50;BaseQRankSum=-0.148;DP=108;ExcessHet=0.0000;FS=3.211;MQ=59.42;MQRankSum=0;QD=18.50;ReadPosRankSum=1.006;SOR=0.257;VarDP=46 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:99:62:.:.:0,299 0|1:23,23:46:99:.:0|1:2212907_G_A:851,0,876:2212907:18,5,11,6 +chrX 2212917 . G A 565 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=14.51;BaseQRankSum=0.3;DP=111;ExcessHet=0.0000;FS=5.691;MQ=59.17;MQRankSum=0;QD=14.51;ReadPosRankSum=0.712;SOR=0.154;VarDP=41 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:99:62:.:.:0,299 0|1:24,17:41:99:.:0|1:2212907_G_A:595,0,947:2212907:20,4,11,6 +chrX 2212928 . A G 577 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=16.41;BaseQRankSum=0;DP=62;ExcessHet=0.0000;FS=6.011;MQ=59.10;MQRankSum=0;QD=16.41;ReadPosRankSum=-0.823;SOR=0.136;VarDP=37 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:67:20:17:.:.:0,20 0|1:20,17:37:99:.:0|1:2212907_G_A:607,0,789:2212907:17,3,11,6 +chrX 2212943 . G GGAAA,GGAAGGAAA 777.97 . AC=1,0;AF=0.333,0.00;AN=3;AS_AltDP=17,0;AS_QD=24.03,8.18;BaseQRankSum=-1.393;DP=59;ExcessHet=0.0000;FS=10.683;MQ=59.67;MQRankSum=0;QD=24.03;ReadPosRankSum=-2.136;SOR=0.040;VarDP=34 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:20:17:0,20,20 0/1:17,17,0:34:99:.:817,0,651,678,702,1383:16,1,11,6 +chrX 2214597 . A G 560 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=10.54;BaseQRankSum=-1.41;DP=74;ExcessHet=0.0000;FS=7.460;MQ=60.00;MQRankSum=0;QD=10.54;ReadPosRankSum=1.233;SOR=1.697;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:20:17:0,20 0/1:30,26:56:99:.:590,0,806:15,15,18,8 +chrX 2214721 . G A 846 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=14.13;BaseQRankSum=-0.788;DP=82;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.13;ReadPosRankSum=-0.176;SOR=0.693;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:20:17:0,20 0/1:29,33:62:99:.:876,0,781:14,15,17,16 +chrX 2214762 . C T 861 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=14.37;BaseQRankSum=-0.67;DP=82;ExcessHet=0.0000;FS=3.414;MQ=60.00;MQRankSum=0;QD=14.37;ReadPosRankSum=0.953;SOR=0.496;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:20:17:0,20 0/1:29,33:62:99:.:891,0,767:12,17,17,16 +chrX 2214856 . C T 810 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=14.24;BaseQRankSum=1.974;DP=78;ExcessHet=0.0000;FS=3.576;MQ=60.00;MQRankSum=0;QD=14.24;ReadPosRankSum=0.69;SOR=0.846;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:20:17:0,20 0/1:29,30:59:99:.:840,0,771:13,16,17,13 +chrX 2215259 . A G 630 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=11.79;BaseQRankSum=-0.313;DP=76;ExcessHet=0.0000;FS=1.039;MQ=60.00;MQRankSum=0;QD=11.79;ReadPosRankSum=-1.501;SOR=0.507;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:20:17:0,20 0/1:31,25:56:99:.:660,0,869:12,19,11,14 +chrX 2215750 . G C 798 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=14.28;BaseQRankSum=0.82;DP=78;ExcessHet=0.0000;FS=9.206;MQ=57.27;MQRankSum=0.761;QD=14.28;ReadPosRankSum=-0.327;SOR=0.428;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:20:17:0,20 0/1:28,30:58:99:.:828,0,739:9,19,16,14 +chrX 2217606 . G A 634 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=14.13;BaseQRankSum=1.32;DP=65;ExcessHet=0.0000;FS=6.243;MQ=59.52;MQRankSum=1.064;QD=14.13;ReadPosRankSum=-0.192;SOR=0.200;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:20:17:0,20 0/1:23,24:47:99:.:664,0,554:7,16,12,12 +chrX 2217774 . T C 541 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=12.15;BaseQRankSum=-1.881;DP=65;ExcessHet=0.0000;FS=8.405;MQ=60.00;MQRankSum=0;QD=12.15;ReadPosRankSum=0.469;SOR=0.163;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:20:17:0,20 0/1:25,22:47:99:.:571,0,716:18,7,11,11 +chrX 2218374 . T C 461 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=10.23;BaseQRankSum=2.003;DP=68;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=10.23;ReadPosRankSum=0.475;SOR=0.866;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:20:17:0,20 0/1:29,19:48:99:.:491,0,773:12,17,7,12 +chrX 2218876 . G A 961 . AC=2;AF=0.667;AN=3;AS_AltDP=64;AS_QD=8.33;BaseQRankSum=1.135;DP=125;ExcessHet=0.0000;FS=0.685;MQ=60.00;MQRankSum=0;QD=8.33;ReadPosRankSum=0.669;SOR=0.585;VarDP=119 GT:AD:DP:GQ:PL:SB 1:30,32:62:90:90,0:14,16,15,17 0/1:25,32:57:99:901,0,638:11,14,16,16 +chrX 2219726 . T G 891 . AC=2;AF=0.667;AN=3;AS_AltDP=67;AS_QD=7.25;BaseQRankSum=1.616;DP=130;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=7.25;ReadPosRankSum=1.166;SOR=0.639;VarDP=127 GT:AD:DP:GQ:PL:SB 1:32,34:66:8:8,0:14,18,16,18 0/1:28,33:61:99:913,0,684:12,16,14,19 +chrX 2220017 . A G 1064 . AC=2;AF=0.667;AN=3;AS_AltDP=68;AS_QD=9.43;BaseQRankSum=-0.348;DP=119;ExcessHet=0.0000;FS=7.259;MQ=60.00;MQRankSum=0;QD=9.43;ReadPosRankSum=0.554;SOR=0.532;VarDP=116 GT:AD:DP:GQ:PL:SB 1:29,36:65:99:210,0:16,13,18,18 0/1:19,32:51:99:884,0,488:13,6,14,18 +chrX 2220219 . C T 1344 . AC=2;AF=0.667;AN=3;AS_AltDP=78;AS_QD=10.25;BaseQRankSum=1.214;DP=136;ExcessHet=0.0000;FS=0.651;MQ=60.00;MQRankSum=0;QD=10.25;ReadPosRankSum=0.209;SOR=0.591;VarDP=134 GT:AD:DP:GQ:PL:SB 1:29,39:68:99:317,0:12,17,21,18 0/1:27,39:66:99:1057,0,670:13,14,16,23 +chrX 2221159 . T C 501 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=9.16;BaseQRankSum=0.175;DP=119;ExcessHet=0.0000;FS=17.955;MQ=60.00;MQRankSum=0;QD=9.16;ReadPosRankSum=0.625;SOR=1.844;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:30:60:0,30 0/1:36,22:58:99:.:531,0,947:14,22,16,6 +chrX 2221645 . A G 825 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=8.55;BaseQRankSum=2.007;DP=105;ExcessHet=0.0000;FS=0.750;MQ=60.00;MQRankSum=0;QD=8.55;ReadPosRankSum=1.67;SOR=0.773;VarDP=100 GT:AD:DP:GQ:PL:SB 1:23,23:46:60:60,0:11,12,10,13 0/1:24,30:54:99:795,0,621:12,12,18,12 +chrX 2222460 . T C 702 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=6.72;BaseQRankSum=-0.532;DP=118;ExcessHet=0.0000;FS=7.457;MQ=60.00;MQRankSum=0;QD=6.72;ReadPosRankSum=1.678;SOR=0.303;VarDP=109 GT:AD:DP:GQ:PL:SB 1:25,26:51:24:24,0:9,16,12,14 0/1:32,26:58:99:708,0,938:11,21,13,13 +chrX 2223063 . A G 989 . AC=2;AF=0.667;AN=3;AS_AltDP=67;AS_QD=8.35;BaseQRankSum=-1.094;DP=127;ExcessHet=0.0000;FS=3.340;MQ=60.00;MQRankSum=0;QD=8.35;ReadPosRankSum=0.479;SOR=0.454;VarDP=122 GT:AD:DP:GQ:PL:SB 1:27,38:65:99:322,0:18,9,21,17 0/1:28,29:57:99:697,0,743:17,11,17,12 +chrX 2223375 . A G 1391 . AC=2;AF=0.667;AN=3;AS_AltDP=84;AS_QD=9.29;BaseQRankSum=-1.265;DP=155;ExcessHet=0.0000;FS=2.018;MQ=60.00;MQRankSum=0;QD=9.29;ReadPosRankSum=-0.018;SOR=0.544;VarDP=153 GT:AD:DP:GQ:PL:SB 1:30,38:68:99:198,0:16,14,16,22 0/1:39,46:85:99:1223,0,1050:14,25,24,22 +chrX 2224254 . AG A 1364.97 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=12.42;BaseQRankSum=-0.555;DP=122;ExcessHet=0.0000;FS=7.408;MQ=60.00;MQRankSum=0;QD=12.42;ReadPosRankSum=0.748;SOR=0.288;VarDP=113 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:23,33:56:99:.:.:451,0:.:10,13,15,18 0|1:32,25:57:99:0|1:2224254_AG_A:953,0,1268:2224254:9,23,13,12 +chrX 2224256 . G A 1374 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=12.42;BaseQRankSum=0.093;DP=118;ExcessHet=0.0000;FS=7.408;MQ=60.00;MQRankSum=0;QD=12.42;ReadPosRankSum=0.966;SOR=0.288;VarDP=113 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:23,33:56:99:.:.:451,0:.:10,13,15,18 0|1:32,25:57:99:0|1:2224254_AG_A:953,0,1268:2224254:9,23,13,12 +chrX 2224258 . C T 1374 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=12.42;BaseQRankSum=2.63;DP=116;ExcessHet=0.0000;FS=7.408;MQ=60.00;MQRankSum=0;QD=12.42;ReadPosRankSum=0.8;SOR=0.288;VarDP=113 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:23,33:56:99:.:.:451,0:.:10,13,15,18 0|1:32,25:57:99:0|1:2224254_AG_A:953,0,1268:2224254:9,23,13,12 +chrX 2224448 . G A 965 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=17.46;BaseQRankSum=-0.054;DP=125;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=17.46;ReadPosRankSum=-1.681;SOR=0.749;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:89:67:0,89 0/1:22,35:57:99:.:995,0,563:11,11,17,18 +chrX 2224734 . A G 917 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=17.22;BaseQRankSum=-1.272;DP=122;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=17.22;ReadPosRankSum=-3.401;SOR=0.622;VarDP=55 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:67:89:67:.:.:0,89 0|1:27,28:55:99:.:0|1:2224734_A_G:947,0,978:2224734:15,12,15,13 +chrX 2224750 . T C 832 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=16.58;BaseQRankSum=1.993;DP=119;ExcessHet=0.0000;FS=1.035;MQ=60.00;MQRankSum=0;QD=16.58;ReadPosRankSum=-1.77;SOR=0.859;VarDP=52 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:67:89:67:.:.:0,89 0|1:28,24:52:99:.:0|1:2224734_A_G:862,0,1022:2224734:14,14,13,11 +chrX 2224865 . T C 653 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=13.13;BaseQRankSum=-1.091;DP=121;ExcessHet=0.0000;FS=2.304;MQ=60.00;MQRankSum=0;QD=13.13;ReadPosRankSum=1.054;SOR=1.045;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:89:67:0,89 0/1:27,25:52:99:.:683,0,772:14,13,15,10 +chrX 2224965 . C CACAT 940.97 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=15.56;BaseQRankSum=1.095;DP=135;ExcessHet=0.0000;FS=5.136;MQ=60.00;MQRankSum=0;QD=15.56;ReadPosRankSum=-0.203;SOR=1.139;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:89:67:0,89 0/1:37,26:63:99:.:980,0,1476:20,17,10,16 +chrX 2225295 . TACAC T 985.97 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=16.80;BaseQRankSum=0.89;DP=133;ExcessHet=0.0000;FS=0.975;MQ=60.00;MQRankSum=0;QD=16.80;ReadPosRankSum=-2.23;SOR=0.667;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:89:67:0,89 0/1:34,27:61:99:.:1025,0,1235:18,16,13,14 +chrX 2225824 . C T 704 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=10.19;BaseQRankSum=-0.337;DP=140;ExcessHet=0.0000;FS=10.109;MQ=58.61;MQRankSum=1.814;QD=10.19;ReadPosRankSum=1.371;SOR=0.309;VarDP=72 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:89:67:0,89 0/1:41,31:72:99:.:734,0,1070:13,28,16,15 +chrX 2226119 . G T 944 . AC=2;AF=0.667;AN=3;AS_AltDP=70;AS_QD=7.27;BaseQRankSum=2.21;DP=137;ExcessHet=0.0000;FS=3.113;MQ=60.00;MQRankSum=0;QD=7.27;ReadPosRankSum=0.702;SOR=1.011;VarDP=134 GT:AD:DP:GQ:PL:SB 1:37,39:76:81:81,0:17,20,18,21 0/1:27,31:58:99:893,0,703:15,12,12,19 +chrX 2226181 . T C 1014 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=18.32;BaseQRankSum=-0.849;DP=115;ExcessHet=0.0000;FS=2.226;MQ=60.00;MQRankSum=0;QD=18.32;ReadPosRankSum=1.6;SOR=0.951;VarDP=57 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:57:99:57:.:.:0,119 0|1:29,28:57:99:.:0|1:2226181_T_C:1044,0,1132:2226181:15,14,12,16 +chrX 2226184 . C T 983 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=18.09;BaseQRankSum=-0.121;DP=113;ExcessHet=0.0000;FS=2.182;MQ=60.00;MQRankSum=0;QD=18.09;ReadPosRankSum=1.329;SOR=0.873;VarDP=56 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:57:99:57:.:.:0,119 0|1:29,27:56:99:.:0|1:2226181_T_C:1013,0,1135:2226181:15,14,12,15 +chrX 2226576 . G A 758 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=9.06;BaseQRankSum=2.761;DP=88;ExcessHet=0.0000;FS=0.799;MQ=59.73;MQRankSum=0;QD=9.06;ReadPosRankSum=0.541;SOR=0.794;VarDP=87 GT:AD:DP:GQ:PL:SB 1:21,29:50:99:328,0:9,12,10,19 0/1:19,18:37:99:460,0,484:9,10,10,8 +chrX 2226695 . G GGAAGCT 731.97 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=19.77;BaseQRankSum=1.331;DP=95;ExcessHet=0.0000;FS=16.048;MQ=58.24;MQRankSum=-2.001;QD=19.77;ReadPosRankSum=-1.279;SOR=1.170;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:52:99:52:0,945 0/1:19,20:39:99:.:771,0,738:14,5,7,13 +chrX 2227345 . G A 1387 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=13.63;BaseQRankSum=3.458;DP=111;ExcessHet=0.0000;FS=1.588;MQ=59.80;MQRankSum=-0.791;QD=13.63;ReadPosRankSum=-0.387;SOR=0.910;VarDP=104 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:22,32:54:99:.:.:518,0:.:8,14,14,18 0|1:26,24:50:99:0|1:2227345_G_A:899,0,954:2227345:15,11,10,14 +chrX 2227358 . G A 1388 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=14.18;BaseQRankSum=2.905;DP=105;ExcessHet=0.0000;FS=2.609;MQ=59.84;MQRankSum=0;QD=14.18;ReadPosRankSum=0.039;SOR=0.463;VarDP=100 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:20,30:50:99:.:.:508,0:.:6,14,14,16 0|1:26,24:50:99:0|1:2227345_G_A:910,0,941:2227345:13,13,12,12 +chrX 2227594 . GA G 325.97 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=13.04;BaseQRankSum=1.139;DP=70;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.04;ReadPosRankSum=0.229;SOR=0.818;VarDP=28 GT:AD:DP:GQ:MIN_DP:PL:SB 1:8,20:28:99:.:365,0:1,7,3,17 0/0:.:30:30:28:0,30,540 +chrX 2228429 . AAGGG A 32.97 . AC=1;AF=0.333;AN=3;AS_AltDP=2;AS_QD=12.00;BaseQRankSum=0;DP=25;ExcessHet=0.0000;FS=0.000;MQ=47.94;MQRankSum=0;QD=12.00;ReadPosRankSum=0;SOR=0.307;VarDP=6 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:14:6:14:0,6 0/1:4,2:6:72:.:72,0,125:4,0,2,0 +chrX 2229936 . T C 914 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=7.49;BaseQRankSum=0.08;DP=130;ExcessHet=0.0000;FS=4.294;MQ=60.00;MQRankSum=0;QD=7.49;ReadPosRankSum=0.573;SOR=0.516;VarDP=126 GT:AD:DP:GQ:PL:SB 1:26,26:52:15:15,0:11,15,16,10 0/1:38,36:74:99:929,0,1029:16,22,16,20 +chrX 2231585 . A ATCC 877.97 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=18.34;BaseQRankSum=-1.0;DP=113;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=18.34;ReadPosRankSum=-1.496;SOR=0.588;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,153 0/1:26,24:50:99:.:917,0,1020:8,18,8,16 +chrX 2231611 . TCTC T 536.97 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=13.09;BaseQRankSum=1.052;DP=108;ExcessHet=0.0000;FS=2.831;MQ=60.00;MQRankSum=0;QD=13.09;ReadPosRankSum=-0.063;SOR=1.184;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,153 0/1:28,16:44:99:.:576,0,1100:10,18,4,12 +chrX 2231699 . A G 342 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=11.27;BaseQRankSum=-1.071;DP=101;ExcessHet=0.0000;FS=5.188;MQ=60.00;MQRankSum=0;QD=11.27;ReadPosRankSum=-0.76;SOR=0.910;VarDP=33 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,153 0/1:18,15:33:99:.:372,0,496:7,11,9,6 +chrX 2231952 . C CTCT 873.97 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=9.82;BaseQRankSum=-0.488;DP=102;ExcessHet=0.0000;FS=0.820;MQ=60.00;MQRankSum=0;QD=9.82;ReadPosRankSum=0.399;SOR=0.824;VarDP=93 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:24,31:55:99:.:.:307,0:.:7,17,10,21 0|1:22,16:38:99:0|1:2231952_C_CTCT:606,0,876:2231952:9,13,5,11 +chrX 2231967 . CCTT C 767.97 . AC=2;AF=0.667;AN=3;AS_AltDP=43;AS_QD=8.87;BaseQRankSum=-0.206;DP=93;ExcessHet=0.0000;FS=0.863;MQ=60.00;MQRankSum=0;QD=8.87;ReadPosRankSum=1.151;SOR=0.851;VarDP=91 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:22,27:49:99:.:.:225,0:.:5,17,7,20 0|1:26,16:42:99:0|1:2231952_C_CTCT:582,0,1044:2231952:10,16,5,11 +chrX 2232033 . C CCTCCTCCCTTACTT,CCTCCTCCCTTTCTT 1108.97 . AC=2,0;AF=0.667,0.00;AN=3;AS_AltDP=42,2;AS_QD=14.53,8.05;BaseQRankSum=1.307;DP=90;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.17;ReadPosRankSum=0.458;SOR=0.631;VarDP=81 GT:AD:DP:GQ:PL:SB 1:19,27,0:46:99:382,0,1215:5,14,8,19 0/1:18,15,2:35:99:766,0,696,452,726,1153:7,11,7,10 +chrX 2232202 . A T 1136 . AC=2;AF=0.667;AN=3;AS_AltDP=70;AS_QD=9.56;BaseQRankSum=1.096;DP=126;ExcessHet=0.0000;FS=1.474;MQ=60.00;MQRankSum=0;QD=9.56;ReadPosRankSum=1.605;SOR=0.899;VarDP=122 GT:AD:DP:GQ:PL:SB 1:28,35:63:99:273,0:17,11,21,14 0/1:24,35:59:99:893,0,600:11,13,20,15 +chrX 2232233 . C T 1041 . AC=1;AF=0.333;AN=3;AS_AltDP=40;AS_QD=17.56;BaseQRankSum=0.326;DP=128;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=17.56;ReadPosRankSum=-0.434;SOR=0.803;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:80:66:0,80 0/1:21,40:61:99:.:1071,0,462:11,10,22,18 +chrX 2232332 . A AAACAAC 1309.97 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=22.48;BaseQRankSum=-0.818;DP=136;ExcessHet=0.0000;FS=0.998;MQ=60.00;MQRankSum=0;QD=22.48;ReadPosRankSum=0.366;SOR=0.693;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:80:66:0,80 0/1:26,34:60:99:.:1349,0,990:14,12,16,18 +chrX 2232355 . G C 852 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=15.21;BaseQRankSum=-1.833;DP=127;ExcessHet=0.0000;FS=7.023;MQ=60.00;MQRankSum=0;QD=15.21;ReadPosRankSum=-1.166;SOR=0.705;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:80:66:0,80 0/1:26,32:58:99:.:882,0,730:16,10,14,18 +chrX 2232613 . C T 861 . AC=2;AF=0.667;AN=3;AS_AltDP=64;AS_QD=7.62;BaseQRankSum=0.045;DP=124;ExcessHet=0.0000;FS=11.802;MQ=59.93;MQRankSum=0;QD=7.62;ReadPosRankSum=0.817;SOR=0.471;VarDP=117 GT:AD:DP:GQ:PL:SB 1:30,34:64:99:99,0:18,12,16,18 0/1:23,30:53:99:792,0,570:16,7,14,16 +chrX 2232804 . C T 706 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=10.67;BaseQRankSum=-1.067;DP=121;ExcessHet=0.0000;FS=6.436;MQ=60.00;MQRankSum=0;QD=10.67;ReadPosRankSum=-0.341;SOR=1.460;VarDP=69 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:70:22:51:.:.:0,22 0|1:39,30:69:99:.:0|1:2232804_C_T:736,0,1477:2232804:20,19,20,10 +chrX 2232814 . C T 1019 . AC=1;AF=0.333;AN=3;AS_AltDP=39;AS_QD=14.57;BaseQRankSum=0.558;DP=124;ExcessHet=0.0000;FS=4.631;MQ=60.00;MQRankSum=0;QD=14.57;ReadPosRankSum=-0.225;SOR=0.326;VarDP=72 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:70:22:51:.:.:0,22 0|1:33,39:72:99:.:1|0:2232804_C_T:1049,0,1165:2232804:21,12,20,19 +chrX 2232908 . C G 1051 . AC=1;AF=0.333;AN=3;AS_AltDP=41;AS_QD=14.22;BaseQRankSum=0.145;DP=128;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.22;ReadPosRankSum=-1.027;SOR=0.783;VarDP=76 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:70:22:51:0,22 0/1:35,41:76:99:.:1081,0,884:18,17,22,19 +chrX 2232935 . T C 908 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=12.85;BaseQRankSum=-0.147;DP=125;ExcessHet=0.0000;FS=1.951;MQ=60.00;MQRankSum=0;QD=12.85;ReadPosRankSum=0.149;SOR=0.450;VarDP=73 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:70:22:51:0,22 0/1:35,38:73:99:.:938,0,878:14,21,18,20 +chrX 2233035 . T C 1074 . AC=1;AF=0.333;AN=3;AS_AltDP=40;AS_QD=15.33;BaseQRankSum=-0.509;DP=125;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=15.33;ReadPosRankSum=0.227;SOR=0.693;VarDP=72 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:70:22:51:0,22 0/1:32,40:72:99:.:1104,0,841:16,16,20,20 +chrX 2233059 . AAAAGAAAGAAAG A 1457.97 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=21.39;BaseQRankSum=0.032;DP=129;ExcessHet=0.0000;FS=0.000;MQ=59.92;MQRankSum=1.118;QD=21.39;ReadPosRankSum=1.965;SOR=0.761;VarDP=70 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:70:22:51:0,22 0/1:32,38:70:99:.:1497,0,1199:18,14,22,16 +chrX 2233241 . C T 806 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=12.48;BaseQRankSum=0.559;DP=122;ExcessHet=0.0000;FS=16.228;MQ=60.00;MQRankSum=0;QD=12.48;ReadPosRankSum=0.006;SOR=2.213;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:70:22:51:0,22 0/1:34,33:67:99:.:836,0,870:18,16,8,25 +chrX 2233371 . CTT C,CT 1746.97 . AC=2,0;AF=0.667,0.00;AN=3;AS_AltDP=54,26;AS_QD=21.52,18.71;BaseQRankSum=2.355;DP=127;ExcessHet=0.0000;FS=1.753;MQ=60.00;MQRankSum=0;QD=16.39;ReadPosRankSum=-1.377;SOR=0.797;VarDP=109 GT:AD:DP:GQ:PL:SB 1:0,35,26:61:99:1246,0,217:0,0,30,31 0/1:29,19,0:48:99:540,0,904,628,962,1589:15,14,7,12 +chrX 2233820 . T A 550 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=11.15;BaseQRankSum=-1.872;DP=123;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=11.15;ReadPosRankSum=-0.267;SOR=0.741;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:70:99:70:0,386 0/1:29,23:52:99:.:580,0,831:16,13,13,10 +chrX 2234508 . T G 1025 . AC=2;AF=0.667;AN=3;AS_AltDP=64;AS_QD=8.31;BaseQRankSum=2.307;DP=135;ExcessHet=0.0000;FS=8.156;MQ=60.00;MQRankSum=0;QD=8.31;ReadPosRankSum=1.996;SOR=1.356;VarDP=127 GT:AD:DP:GQ:PL:SB 1:28,32:60:99:199,0:12,16,11,21 0/1:35,32:67:99:856,0,964:19,16,12,20 +chrX 2235739 . GAA G 343.97 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=12.77;BaseQRankSum=1.352;DP=104;ExcessHet=0.0000;FS=11.831;MQ=59.34;MQRankSum=1.002;QD=12.77;ReadPosRankSum=-0.798;SOR=1.627;VarDP=30 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,225 0/1:16,14:30:99:.:383,0,452:5,11,10,4 +chrX 2235883 . G A 744 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=11.38;BaseQRankSum=0.443;DP=132;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=11.38;ReadPosRankSum=1.143;SOR=0.643;VarDP=68 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,225 0/1:38,30:68:99:.:774,0,1021:22,16,17,13 +chrX 2236060 . T C 946 . AC=1;AF=0.333;AN=3;AS_AltDP=40;AS_QD=14.79;BaseQRankSum=-2.037;DP=132;ExcessHet=0.0000;FS=2.270;MQ=59.62;MQRankSum=0;QD=14.79;ReadPosRankSum=-1.51;SOR=0.418;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,225 0/1:26,40:66:99:.:976,0,657:7,19,14,26 +chrX 2236711 . T C 594 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=12.48;BaseQRankSum=-0.741;DP=115;ExcessHet=0.0000;FS=0.000;MQ=59.88;MQRankSum=1.001;QD=12.48;ReadPosRankSum=-0.078;SOR=0.716;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,225 0/1:26,24:50:99:.:624,0,699:15,11,14,10 +chrX 2236883 . T TA 617.97 . AC=2;AF=0.667;AN=3;AS_AltDP=50;AS_QD=6.99;BaseQRankSum=1.504;DP=111;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=6.99;ReadPosRankSum=1.03;SOR=0.683;VarDP=94 GT:AD:DP:GQ:PL:SB 1:18,26:44:99:188,0:9,9,14,12 0/1:26,24:50:99:469,0,549:14,12,12,12 +chrX 2237014 . C A 1439 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=21.29;BaseQRankSum=-0.909;DP=134;ExcessHet=0.0000;FS=0.933;MQ=60.00;MQRankSum=0;QD=21.29;ReadPosRankSum=0.867;SOR=0.941;VarDP=69 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:89:62:.:.:0,89 0|1:31,38:69:99:.:0|1:2237014_C_A:1469,0,1143:2237014:17,14,23,15 +chrX 2237018 . G A 1414 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=21.55;BaseQRankSum=1.714;DP=130;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=21.55;ReadPosRankSum=1.247;SOR=0.811;VarDP=67 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:89:62:.:.:0,89 0|1:30,37:67:99:.:0|1:2237014_C_A:1444,0,1118:2237014:17,13,22,15 +chrX 2237230 . T C 704 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=13.11;BaseQRankSum=0.719;DP=120;ExcessHet=0.0000;FS=0.995;MQ=60.00;MQRankSum=0;QD=13.11;ReadPosRankSum=-0.32;SOR=0.846;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:89:62:0,89 0/1:29,27:56:99:.:734,0,800:15,14,15,12 +chrX 2238331 . T G 930 . AC=2;AF=0.667;AN=3;AS_AltDP=67;AS_QD=7.62;BaseQRankSum=0.37;DP=134;ExcessHet=0.0000;FS=6.767;MQ=59.82;MQRankSum=0;QD=7.62;ReadPosRankSum=0.259;SOR=1.087;VarDP=126 GT:AD:DP:GQ:PL:SB 1:31,37:68:99:192,0:14,17,19,18 0/1:28,30:58:99:768,0,739:14,14,21,9 +chrX 2238677 . A G 574 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=11.84;BaseQRankSum=-1.102;DP=120;ExcessHet=0.0000;FS=2.359;MQ=60.00;MQRankSum=0;QD=11.84;ReadPosRankSum=-0.151;SOR=0.420;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:46:67:0,46 0/1:28,23:51:99:.:604,0,800:11,17,11,12 +chrX 2238750 . AT A 467.97 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=10.79;BaseQRankSum=-2.258;DP=125;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=10.79;ReadPosRankSum=0.852;SOR=0.770;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:46:67:0,46 0/1:23,24:47:99:.:507,0,459:12,11,13,11 +chrX 2239405 . C CA 175.97 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=7.17;BaseQRankSum=0.565;DP=109;ExcessHet=0.0000;FS=1.468;MQ=59.63;MQRankSum=0;QD=7.17;ReadPosRankSum=1.382;SOR=0.607;VarDP=30 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:46:67:0,46 0/1:17,13:30:99:.:215,0,310:10,7,6,7 +chrX 2239718 . G A 730 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=11.18;BaseQRankSum=-0.406;DP=138;ExcessHet=0.0000;FS=1.975;MQ=59.63;MQRankSum=-1.031;QD=11.18;ReadPosRankSum=0.018;SOR=0.957;VarDP=68 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:46:67:0,46 0/1:36,32:68:99:.:760,0,923:18,18,14,18 +chrX 2239756 . A G 710 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=11.75;BaseQRankSum=-1.049;DP=131;ExcessHet=0.0000;FS=0.971;MQ=59.59;MQRankSum=-1.017;QD=11.75;ReadPosRankSum=-1.825;SOR=0.922;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:46:67:0,46 0/1:33,30:63:99:.:740,0,883:15,18,12,18 +chrX 2240291 . C CA 959.97 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=17.84;BaseQRankSum=-2.952;DP=134;ExcessHet=0.0000;FS=2.268;MQ=59.71;MQRankSum=-1.351;QD=17.84;ReadPosRankSum=-0.821;SOR=0.758;VarDP=56 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:67:46:67:.:.:0,46 0|1:27,29:56:99:.:0|1:2240291_C_CA:999,0,932:2240291:12,15,16,13 +chrX 2240312 . A T 1066 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=17.13;BaseQRankSum=-0.5;DP=129;ExcessHet=0.0000;FS=2.124;MQ=59.72;MQRankSum=-1.403;QD=17.13;ReadPosRankSum=0.755;SOR=1.119;VarDP=64 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:59:15:59:.:.:0,15 0|1:32,32:64:99:.:0|1:2240291_C_CA:1096,0,1050:2240291:17,15,20,12 +chrX 2241052 . C T 1429 . AC=2;AF=0.667;AN=3;AS_AltDP=83;AS_QD=10.42;BaseQRankSum=0.466;DP=145;ExcessHet=0.0000;FS=4.039;MQ=60.00;MQRankSum=0;QD=10.42;ReadPosRankSum=1.179;SOR=0.962;VarDP=140 GT:AD:DP:GQ:PL:SB 1:32,45:77:99:442,0:14,18,21,24 0/1:25,38:63:99:1017,0,580:14,11,26,12 +chrX 2241145 . C T 1226 . AC=2;AF=0.667;AN=3;AS_AltDP=78;AS_QD=8.72;BaseQRankSum=1.557;DP=153;ExcessHet=0.0000;FS=2.075;MQ=60.00;MQRankSum=0;QD=8.72;ReadPosRankSum=0.748;SOR=0.639;VarDP=144 GT:AD:DP:GQ:PL:SB 1:36,38:74:99:130,0:18,18,19,19 0/1:30,40:70:99:1126,0,718:17,13,19,21 +chrX 2241203 . C T 814 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=12.41;BaseQRankSum=-0.292;DP=123;ExcessHet=0.0000;FS=10.771;MQ=60.00;MQRankSum=0;QD=12.41;ReadPosRankSum=-0.153;SOR=1.786;VarDP=68 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:55:24:49:0,24 0/1:34,34:68:99:.:844,0,869:18,16,10,24 +chrX 2241596 . C T 718 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=14.96;BaseQRankSum=-0.162;DP=100;ExcessHet=0.0000;FS=3.905;MQ=60.00;MQRankSum=0;QD=14.96;ReadPosRankSum=0.185;SOR=0.465;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:55:24:49:0,24 0/1:23,27:50:99:.:748,0,614:9,14,14,13 +chrX 2241725 . G A 1090 . AC=2;AF=0.667;AN=3;AS_AltDP=65;AS_QD=10.09;BaseQRankSum=0.134;DP=114;ExcessHet=0.0000;FS=3.552;MQ=59.96;MQRankSum=1.059;QD=10.09;ReadPosRankSum=0.594;SOR=0.588;VarDP=111 GT:AD:DP:GQ:PL:SB 1:25,26:51:50:50,0:11,14,11,15 0/1:21,39:60:99:1070,0,509:9,12,23,16 +chrX 2241751 . A C 1170 . AC=2;AF=0.667;AN=3;AS_AltDP=65;AS_QD=11.21;BaseQRankSum=-0.661;DP=110;ExcessHet=0.0000;FS=0.000;MQ=59.96;MQRankSum=1.18;QD=11.21;ReadPosRankSum=0.607;SOR=0.753;VarDP=107 GT:AD:DP:GQ:PL:SB 1:23,30:53:99:222,0:12,11,13,17 0/1:19,35:54:99:978,0,479:10,9,22,13 +chrX 2242251 . T G 467 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=9.75;BaseQRankSum=0.079;DP=110;ExcessHet=0.0000;FS=15.832;MQ=60.00;MQRankSum=0;QD=9.75;ReadPosRankSum=-0.59;SOR=1.100;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,477 0/1:29,22:51:99:.:497,0,746:20,9,8,14 +chrX 2243088 . C G 3077 . AC=3;AF=1.00;AN=3;AS_AltDP=93;AS_QD=33.41;DP=94;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.41;SOR=0.758;VarDP=93 GT:AD:DP:GQ:PL:SB 1:0,54:54:99:1804,0:0,0,29,25 1/1:0,39:39:99:1303,117,0:0,0,16,23 +chrX 2243354 . T C 636 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=11.29;BaseQRankSum=-1.503;DP=129;ExcessHet=0.0000;FS=3.731;MQ=60.00;MQRankSum=0;QD=11.29;ReadPosRankSum=0.759;SOR=1.329;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,1786 0/1:31,28:59:99:.:666,0,805:14,17,9,19 +chrX 2243483 . T A 754 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=7.00;BaseQRankSum=-0.846;DP=118;ExcessHet=0.0000;FS=0.708;MQ=59.81;MQRankSum=0;QD=7.00;ReadPosRankSum=-0.722;SOR=0.822;VarDP=112 GT:AD:DP:GQ:PL:SB 1:29,35:64:99:138,0:15,14,20,15 0/1:24,24:48:99:646,0,668:13,11,13,11 +chrX 2243631 . T C 593 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=6.17;BaseQRankSum=-0.593;DP=102;ExcessHet=0.0000;FS=2.574;MQ=60.00;MQRankSum=0;QD=6.17;ReadPosRankSum=0.952;SOR=0.900;VarDP=101 GT:AD:DP:GQ:PL:SB 1:29,32:61:19:19,0:14,15,18,14 0/1:18,22:40:99:604,0,485:9,9,12,10 +chrX 2243768 . C A 760 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=15.80;BaseQRankSum=-0.789;DP=88;ExcessHet=0.0000;FS=2.453;MQ=59.91;MQRankSum=0.927;QD=15.80;ReadPosRankSum=-1.173;SOR=0.368;VarDP=50 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:39:34:37:.:.:0,34 0|1:28,22:50:99:.:0|1:2243768_C_A:790,0,1032:2243768:11,17,11,11 +chrX 2243785 . CCTGTTTTTTTTTTTTTTTTT C 802.97 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=15.31;BaseQRankSum=0.031;DP=92;ExcessHet=0.0000;FS=3.943;MQ=59.61;MQRankSum=1.236;QD=15.31;ReadPosRankSum=1.902;SOR=0.315;VarDP=55 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:39:34:37:.:.:0,34 0|1:32,23:55:99:.:0|1:2243768_C_A:842,0,1264:2243768:10,22,10,13 +chrX 2243798 . T TG,* 2588.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=43,22;AS_QD=28.57,0.00;DP=85;ExcessHet=0.0000;FS=0.000;MQ=59.55;QD=40.43;SOR=1.249;VarDP=65 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,20,0:20:99:.:.:856,0,923:.:0,0,6,14 1|2:0,23,22:45:99:1|0:2243768_C_A:1772,905,833,880,0,941:2243768:0,0,19,26 +chrX 2243802 . T TGTTTTG,* 2661.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=46,22;AS_QD=25.01,0.00;DP=87;ExcessHet=0.0000;FS=0.000;MQ=59.47;QD=39.72;SOR=1.352;VarDP=68 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,22,0:22:99:.:.:914,0,997:.:0,0,6,16 1|2:0,24,22:46:99:1|0:2243768_C_A:1787,906,833,893,0,942:2243768:0,0,19,27 +chrX 2243808 . T G 812 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=19.58;BaseQRankSum=-0.28;DP=80;ExcessHet=0.0000;FS=2.704;MQ=59.50;MQRankSum=1.498;QD=19.58;ReadPosRankSum=2.435;SOR=0.335;VarDP=43 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:37:53:37:.:.:0,53 0|1:21,22:43:99:.:0|1:2243768_C_A:842,0,816:2243768:7,14,10,12 +chrX 2243809 . T TTTG 764.97 . AC=2;AF=0.667;AN=3;AS_AltDP=42;AS_QD=9.80;BaseQRankSum=1.148;DP=85;ExcessHet=0.0000;FS=1.862;MQ=59.46;MQRankSum=-1.326;QD=9.80;ReadPosRankSum=1.165;SOR=1.002;VarDP=82 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:19,21:40:67:.:.:67,0:.:7,12,8,13 0|1:21,21:42:99:1|0:2243768_C_A:737,0,802:2243768:10,11,7,14 +chrX 2244302 . C CCTCTCT,CCTCTCTCT 4487.97 . AC=1,2;AF=0.333,0.667;AN=3;AS_AltDP=57,55;AS_QD=30.12,29.57;DP=137;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=40.42;SOR=1.109;VarDP=112 GT:AD:DP:GQ:PL:SB 2:0,22,33:55:99:1940,359,0:0,0,32,23 1/2:0,35,22:57:99:2587,760,581,1230,0,1058:0,0,34,23 +chrX 2244618 . A G 559 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=5.08;BaseQRankSum=-0.537;DP=121;ExcessHet=0.0000;FS=1.486;MQ=60.00;MQRankSum=0;QD=5.08;ReadPosRankSum=0.696;SOR=0.859;VarDP=116 GT:AD:DP:GQ:PL:SB 1:29,32:61:4:4,0:12,17,14,18 0/1:31,24:55:99:585,0,828:15,16,9,15 +chrX 2244671 . C T 569 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=11.52;BaseQRankSum=2.301;DP=116;ExcessHet=0.0000;FS=5.699;MQ=60.00;MQRankSum=0;QD=11.52;ReadPosRankSum=1.028;SOR=1.269;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:58:99:58:0,109 0/1:30,22:52:99:.:599,0,781:16,14,8,14 +chrX 2244683 . TTA T 3452.97 . AC=3;AF=1.00;AN=3;AS_AltDP=92;AS_QD=31.54;DP=115;ExcessHet=0.0000;FS=0.000;MQ=59.84;QD=37.96;SOR=0.693;VarDP=92 GT:AD:DP:GQ:PL:SB 1:0,46:46:99:1741,0:0,0,23,23 1/1:0,46:46:99:1751,139,0:0,0,23,23 +chrX 2244752 . A C 727 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=12.21;BaseQRankSum=1.822;DP=127;ExcessHet=0.0000;FS=5.661;MQ=60.00;MQRankSum=0;QD=12.21;ReadPosRankSum=-0.467;SOR=1.493;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:90:64:0,90 0/1:34,28:62:99:.:757,0,881:22,12,22,6 +chrX 2244852 . T C 1156 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=10.22;BaseQRankSum=1.752;DP=121;ExcessHet=0.0000;FS=14.059;MQ=59.65;MQRankSum=0;QD=10.22;ReadPosRankSum=0.063;SOR=1.481;VarDP=116 GT:AD:DP:GQ:PL:SB 1:22,31:53:99:352,0:10,12,19,12 0/1:32,31:63:99:834,0,828:15,17,22,9 +chrX 2244944 . A T 3826 . AC=3;AF=1.00;AN=3;AS_AltDP=116;AS_QD=33.24;DP=123;ExcessHet=0.0000;FS=0.000;MQ=59.79;QD=33.24;SOR=1.047;VarDP=116 GT:AD:DP:GQ:PL:SB 1:0,56:56:99:1841,0:0,0,24,32 1/1:0,60:60:99:2015,180,0:0,0,25,35 +chrX 2245062 . A G 4186 . AC=3;AF=1.00;AN=3;AS_AltDP=127;AS_QD=33.20;DP=132;ExcessHet=0.0000;FS=0.000;MQ=59.96;QD=33.20;SOR=0.709;VarDP=127 GT:AD:DP:GQ:PL:SB 1:0,64:64:99:2127,0:0,0,35,29 1/1:0,63:63:99:2089,189,0:0,0,29,34 +chrX 2245530 . G A 428 . AC=2;AF=0.667;AN=3;AS_AltDP=40;AS_QD=6.11;BaseQRankSum=1.297;DP=78;ExcessHet=0.0000;FS=3.247;MQ=59.61;MQRankSum=1.491;QD=6.11;ReadPosRankSum=0.395;SOR=1.201;VarDP=75 GT:AD:DP:GQ:PL:SB 1:23,24:47:20:20,0:10,13,6,18 0/1:12,16:28:99:438,0,279:5,7,7,9 +chrX 2245695 . T C 2582 . AC=3;AF=1.00;AN=3;AS_AltDP=83;AS_QD=31.47;DP=89;ExcessHet=0.0000;FS=0.000;MQ=59.91;QD=31.47;SOR=1.248;VarDP=83 GT:AD:DP:GQ:PL:SB 1:0,40:40:99:1238,0:0,0,27,13 1/1:0,43:43:99:1374,129,0:0,0,24,19 +chrX 2245729 . G A 908 . AC=2;AF=0.667;AN=3;AS_AltDP=43;AS_QD=12.51;BaseQRankSum=1.382;DP=80;ExcessHet=0.0000;FS=0.000;MQ=59.84;MQRankSum=-0.89;QD=12.51;ReadPosRankSum=-0.367;SOR=0.650;VarDP=75 GT:AD:DP:GQ:PL:SB 1:11,26:37:99:491,0:8,3,18,8 0/1:21,17:38:99:447,0,533:14,7,11,6 +chrX 2245763 . C T 571 . AC=2;AF=0.667;AN=3;AS_AltDP=33;AS_QD=9.85;BaseQRankSum=0.316;DP=70;ExcessHet=0.0000;FS=9.799;MQ=59.89;MQRankSum=-0.748;QD=9.85;ReadPosRankSum=1.758;SOR=0.152;VarDP=61 GT:AD:DP:GQ:PL:SB 1:12,18:30:99:214,0:10,2,9,9 0/1:16,15:31:99:387,0,433:12,4,10,5 +chrX 2245970 . C A 2487 . AC=3;AF=1.00;AN=3;AS_AltDP=69;AS_QD=30.45;DP=75;ExcessHet=0.0000;FS=0.000;MQ=58.82;QD=36.48;SOR=1.054;VarDP=69 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,42:42:99:.:.:1558,0:.:0,0,25,17 1|1:0,27:27:81:0|1:2245961_C_A:959,81,0:2245961:0,0,15,12 +chrX 2246364 . C T 420 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=9.57;BaseQRankSum=1.359;DP=99;ExcessHet=0.0000;FS=11.114;MQ=60.00;MQRankSum=0;QD=9.57;ReadPosRankSum=0.221;SOR=1.194;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:54:52:0,54 0/1:30,17:47:99:.:450,0,854:19,11,6,11 +chrX 2246669 . GA G 36.97 . AC=1;AF=0.333;AN=3;AS_AltDP=4;AS_QD=4.00;BaseQRankSum=1.193;DP=100;ExcessHet=0.0000;FS=2.754;MQ=59.50;MQRankSum=0;QD=4.00;ReadPosRankSum=0.3;SOR=1.675;VarDP=19 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:54:52:.:.:0,54 0|1:15,4:19:76:.:0|1:2246669_GA_G:76,0,620:2246669:11,4,4,0 +chrX 2246676 . AAG A 30.97 . AC=1;AF=0.333;AN=3;AS_AltDP=4;AS_QD=3.33;BaseQRankSum=0.992;DP=101;ExcessHet=0.0000;FS=2.740;MQ=59.51;MQRankSum=0;QD=3.33;ReadPosRankSum=0.945;SOR=1.845;VarDP=21 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:54:52:.:.:0,54 0|1:17,4:21:70:.:0|1:2246669_GA_G:70,0,704:2246669:12,5,4,0 +chrX 2246696 . A AGAAAG 34.97 . AC=1;AF=0.333;AN=3;AS_AltDP=4;AS_QD=3.70;BaseQRankSum=1.321;DP=90;ExcessHet=0.0000;FS=2.754;MQ=60.00;MQRankSum=0;QD=3.70;ReadPosRankSum=1.514;SOR=1.981;VarDP=20 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:54:52:.:.:0,54 0|1:16,4:20:74:.:0|1:2246669_GA_G:74,0,661:2246669:11,5,4,0 +chrX 2246706 . G GAA,GAGAAAGAAAGAA 416.97 . AC=1,0;AF=0.333,0.00;AN=3;AS_AltDP=4,0;AS_QD=32.57,31.20;BaseQRankSum=1.516;DP=92;ExcessHet=0.0000;FS=6.008;MQ=60.00;MQRankSum=0;QD=32.57;ReadPosRankSum=0.283;SOR=2.621;VarDP=14 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:54:52:0,54,54 0/1:10,4,0:14:99:.:456,0,634,144,398,943:6,4,4,0 +chrX 2246746 . AAG A 902.97 . AC=2;AF=0.667;AN=3;AS_AltDP=39;AS_QD=13.08;BaseQRankSum=0.864;DP=77;ExcessHet=0.0000;FS=3.363;MQ=59.35;MQRankSum=2.752;QD=13.08;ReadPosRankSum=-0.243;SOR=0.350;VarDP=72 GT:AD:DP:GQ:PL:SB 1:10,23:33:99:449,0:8,2,15,8 0/1:23,16:39:99:493,0,869:15,8,8,8 +chrX 2246804 . C T 829 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=8.86;BaseQRankSum=0.679;DP=101;ExcessHet=0.0000;FS=5.065;MQ=60.00;MQRankSum=0;QD=8.86;ReadPosRankSum=1.502;SOR=0.795;VarDP=97 GT:AD:DP:GQ:PL:SB 1:18,30:48:99:291,0:8,10,16,14 0/1:27,22:49:99:568,0,682:12,15,13,9 +chrX 2246906 . A G 3481 . AC=3;AF=1.00;AN=3;AS_AltDP=109;AS_QD=31.92;BaseQRankSum=-0.275;DP=116;ExcessHet=0.0000;FS=3.693;MQ=60.00;MQRankSum=0;QD=31.92;ReadPosRankSum=1.051;SOR=0.744;VarDP=110 GT:AD:DP:GQ:PL:SB 1:1,60:61:99:1960,0:0,1,33,27 1/1:0,49:49:99:1551,146,0:0,0,30,19 +chrX 2247035 . G C 3459 . AC=3;AF=1.00;AN=3;AS_AltDP=108;AS_QD=32.31;DP=114;ExcessHet=0.0000;FS=0.000;MQ=59.62;QD=32.31;SOR=0.849;VarDP=108 GT:AD:DP:GQ:PL:SB 1:0,54:54:99:1781,0:0,0,27,27 1/1:0,54:54:99:1708,162,0:0,0,23,31 +chrX 2247254 . A G 3667 . AC=3;AF=1.00;AN=3;AS_AltDP=115;AS_QD=32.15;DP=120;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.15;SOR=1.028;VarDP=115 GT:AD:DP:GQ:PL:SB 1:0,53:53:99:1707,0:0,0,21,32 1/1:0,62:62:99:1990,186,0:0,0,28,34 +chrX 2247539 . A C 1063 . AC=2;AF=0.667;AN=3;AS_AltDP=48;AS_QD=13.17;BaseQRankSum=-0.367;DP=84;ExcessHet=0.0000;FS=2.936;MQ=59.09;MQRankSum=0.309;QD=13.17;ReadPosRankSum=-0.272;SOR=0.742;VarDP=83 GT:AD:DP:GQ:PL:SB 1:11,31:42:99:655,0:6,5,18,13 0/1:24,17:41:99:438,0,666:10,14,8,9 +chrX 2247655 . CAA C 1051.97 . AC=2;AF=0.667;AN=3;AS_AltDP=46;AS_QD=19.48;BaseQRankSum=1.293;DP=95;ExcessHet=0.0000;FS=11.081;MQ=59.38;MQRankSum=0.872;QD=19.48;ReadPosRankSum=0.897;SOR=0.075;VarDP=56 GT:AD:DP:GQ:PL:SB 1:6,28:34:99:654,0:0,6,11,17 0/1:4,18:22:26:437,0,26:1,3,8,10 +chrX 2247967 . G C 3165 . AC=3;AF=1.00;AN=3;AS_AltDP=99;AS_QD=32.27;DP=100;ExcessHet=0.0000;FS=0.000;MQ=59.95;QD=32.27;SOR=0.713;VarDP=99 GT:AD:DP:GQ:PL:SB 1:0,56:56:99:1801,0:0,0,26,30 1/1:0,43:43:99:1394,128,0:0,0,24,19 +chrX 2248128 . C T 3238 . AC=3;AF=1.00;AN=3;AS_AltDP=100;AS_QD=32.36;BaseQRankSum=2.506;DP=105;ExcessHet=0.0000;FS=3.141;MQ=59.91;MQRankSum=0;QD=32.36;ReadPosRankSum=0.476;SOR=0.351;VarDP=101 GT:AD:DP:GQ:PL:SB 1:0,50:50:99:1661,0:0,0,23,27 1/1:1,50:51:99:1607,142,0:0,1,29,21 +chrX 2248285 . T C 813 . AC=2;AF=0.667;AN=3;AS_AltDP=64;AS_QD=7.14;BaseQRankSum=-0.029;DP=121;ExcessHet=0.0000;FS=0.000;MQ=59.96;MQRankSum=0;QD=7.14;ReadPosRankSum=0.587;SOR=0.744;VarDP=118 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:31,36:67:73:.:.:73,0:.:18,13,20,16 0|1:23,28:51:99:0|1:2248285_T_C:770,0,606:2248285:10,13,14,14 +chrX 2248293 . T C 4534 . AC=3;AF=1.00;AN=3;AS_AltDP=124;AS_QD=26.28;DP=126;ExcessHet=0.0000;FS=0.000;MQ=59.75;QD=36.81;SOR=0.759;VarDP=124 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,64:64:99:.:.:2363,0:.:0,0,36,28 1|1:0,60:60:99:0|1:2248285_T_C:2201,179,0:2248285:0,0,24,36 +chrX 2248432 . C CAAAAAA,CAAAAAAA 1747.97 . AC=1,2;AF=0.333,0.667;AN=3;AS_AltDP=14,23;AS_QD=31.18,29.38;BaseQRankSum=-0.297;DP=70;ExcessHet=0.0000;FS=3.245;MQ=57.17;MQRankSum=2.32;QD=47.03;ReadPosRankSum=-1.571;SOR=0.477;VarDP=38 GT:AD:DP:GQ:PL:SB 2:1,7,13:21:99:843,162,0:1,0,9,11 1/2:0,7,10:17:99:944,244,176,175,0,107:0,0,8,9 +chrX 2248627 . G A 3042 . AC=3;AF=1.00;AN=3;AS_AltDP=71;AS_QD=27.00;DP=78;ExcessHet=0.0000;FS=0.000;MQ=57.44;QD=43.27;SOR=1.085;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,40:40:99:1754,0:0,0,16,24 1/1:0,31:31:93:1318,93,0:0,0,13,17 +chrX 2248628 . A AAG,AAAG 2325.97 . AC=1,2;AF=0.333,0.667;AN=3;AS_AltDP=24,25;AS_QD=30.56,34.69;BaseQRankSum=-0.183;DP=78;ExcessHet=0.0000;FS=0.000;MQ=57.44;MQRankSum=0;QD=47.30;ReadPosRankSum=0.511;SOR=0.361;VarDP=50 GT:AD:DP:GQ:PL:SB 2:0,14,19:33:71:1415,71,0:0,0,13,20 1/2:1,10,6:17:50:950,117,50,266,0,215:0,1,8,8 +chrX 2248657 . A AGAAAAG 3203.97 . AC=3;AF=1.00;AN=3;AS_AltDP=74;AS_QD=30.05;DP=83;ExcessHet=0.0000;FS=0.000;MQ=58.22;QD=43.82;SOR=0.693;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,37:37:99:1640,0:0,0,17,20 1/1:0,37:37:99:1603,111,0:0,0,20,17 +chrX 2249076 . T C 3561 . AC=3;AF=1.00;AN=3;AS_AltDP=111;AS_QD=32.35;DP=115;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.35;SOR=0.748;VarDP=111 GT:AD:DP:GQ:PL:SB 1:0,51:51:99:1697,0:0,0,24,27 1/1:0,60:60:99:1894,179,0:0,0,33,27 +chrX 2249191 . C T,CTT 2170 . AC=0,3;AF=0.00,1.00;AN=3;AS_AltDP=0,74;AS_QD=32.00,29.73;DP=103;ExcessHet=0.0000;FS=0.000;MQ=58.95;QD=29.73;SOR=1.371;VarDP=74 GT:AD:DP:GQ:PL:SB 2:0,0,31:31:99:1014,1546,0:0,0,21,10 2/2:0,0,43:43:99:1186,1186,1186,129,129,0:0,0,26,17 +chrX 2249482 . T C 2911 . AC=3;AF=1.00;AN=3;AS_AltDP=94;AS_QD=30.96;BaseQRankSum=-0.466;DP=104;ExcessHet=0.0000;FS=3.150;MQ=59.85;MQRankSum=0;QD=30.96;ReadPosRankSum=0.482;SOR=0.359;VarDP=95 GT:AD:DP:GQ:PL:SB 1:0,59:59:99:1855,0:0,0,32,27 1/1:1,35:36:73:1086,73,0:0,1,17,18 +chrX 2249513 . C CT 140.97 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=7.50;BaseQRankSum=0.653;DP=99;ExcessHet=0.0000;FS=7.650;MQ=57.54;MQRankSum=-0.629;QD=7.50;ReadPosRankSum=-1.842;SOR=0.275;VarDP=24 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:48:44:47:0,44 0/1:7,17:24:66:.:180,0,66:1,6,9,8 +chrX 2249579 . G A 490 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=14.86;BaseQRankSum=1.086;DP=83;ExcessHet=0.0000;FS=1.399;MQ=59.55;MQRankSum=-0.915;QD=14.86;ReadPosRankSum=0.132;SOR=0.392;VarDP=35 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:48:44:47:0,44 0/1:17,18:35:99:.:520,0,475:5,12,7,11 +chrX 2250161 . C CA,CAA 1416.97 . AC=1,2;AF=0.333,0.667;AN=3;AS_AltDP=19,37;AS_QD=33.38,34.71;DP=91;ExcessHet=0.0000;FS=0.000;MQ=58.32;QD=26.00;SOR=0.841;VarDP=56 GT:AD:DP:GQ:PL:SB 2:0,8,19:27:99:741,211,0:0,0,15,12 1/2:0,11,18:29:99:715,326,233,198,0,127:0,0,15,14 +chrX 2251282 . T C 1044 . AC=2;AF=0.667;AN=3;AS_AltDP=65;AS_QD=8.88;BaseQRankSum=1.724;DP=125;ExcessHet=0.0000;FS=5.588;MQ=60.00;MQRankSum=0;QD=8.88;ReadPosRankSum=3.578;SOR=0.780;VarDP=121 GT:AD:DP:GQ:PL:SB 1:27,36:63:99:250,0:10,17,20,16 0/1:29,29:58:99:824,0,782:15,14,16,13 +chrX 2251916 . C T 1268 . AC=2;AF=0.667;AN=3;AS_AltDP=69;AS_QD=10.64;BaseQRankSum=1.857;DP=125;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=10.64;ReadPosRankSum=0.592;SOR=0.726;VarDP=122 GT:AD:DP:GQ:PL:SB 1:25,39:64:99:482,0:12,13,21,18 0/1:28,30:58:99:816,0,635:16,12,16,14 +chrX 2252000 . G T 3886 . AC=3;AF=1.00;AN=3;AS_AltDP=117;AS_QD=33.47;DP=121;ExcessHet=0.0000;FS=0.000;MQ=59.94;QD=33.47;SOR=0.710;VarDP=117 GT:AD:DP:GQ:PL:SB 1:0,54:54:99:1856,0:0,0,31,23 1/1:0,63:63:99:2060,189,0:0,0,27,36 +chrX 2252190 . C T 1136 . AC=2;AF=0.667;AN=3;AS_AltDP=79;AS_QD=8.64;BaseQRankSum=1.446;DP=140;ExcessHet=0.0000;FS=1.388;MQ=60.00;MQRankSum=0;QD=8.64;ReadPosRankSum=0.75;SOR=0.551;VarDP=135 GT:AD:DP:GQ:PL:SB 1:37,45:82:99:208,0:14,23,22,23 0/1:19,34:53:99:958,0,427:10,9,15,19 +chrX 2252239 . AAAAT A 857.97 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=7.87;BaseQRankSum=0;DP=134;ExcessHet=0.0000;FS=3.431;MQ=60.00;MQRankSum=0;QD=7.87;ReadPosRankSum=0.166;SOR=0.750;VarDP=114 GT:AD:DP:GQ:PL:SB 1:34,40:74:99:252,0:16,18,16,24 0/1:23,17:40:99:645,0,897:15,8,10,7 +chrX 2252435 . C T 3694 . AC=3;AF=1.00;AN=3;AS_AltDP=113;AS_QD=32.96;DP=117;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.96;SOR=0.711;VarDP=113 GT:AD:DP:GQ:PL:SB 1:0,63:63:99:2079,0:0,0,30,33 1/1:0,50:50:99:1645,149,0:0,0,27,23 +chrX 2252942 . AG A 736.97 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=12.52;BaseQRankSum=-0.487;DP=130;ExcessHet=0.0000;FS=0.979;MQ=60.00;MQRankSum=0;QD=12.52;ReadPosRankSum=0.042;SOR=0.892;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,321 0/1:34,28:62:99:.:776,0,928:19,15,17,11 +chrX 2253347 . A T 744 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=14.33;BaseQRankSum=1.152;DP=123;ExcessHet=0.0000;FS=7.565;MQ=59.76;MQRankSum=0.899;QD=14.33;ReadPosRankSum=-0.172;SOR=1.349;VarDP=54 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:68:9:68:.:.:0,9 0|1:31,23:54:99:.:0|1:2253347_A_T:774,0,1126:2253347:14,17,15,8 +chrX 2253357 . GGGAGGCGGACATGGCCGTGAGCCAAGATGGCGCCACGGCACTCCAGCCTA G 669.97 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=10.28;BaseQRankSum=1.551;DP=138;ExcessHet=0.0000;FS=6.790;MQ=59.53;MQRankSum=1.221;QD=10.28;ReadPosRankSum=0.344;SOR=1.270;VarDP=69 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:64:72:64:.:.:0,72 0|1:47,22:69:99:.:0|1:2253347_A_T:709,0,1805:2253347:22,25,14,8 +chrX 2253598 . G T 1221 . AC=2;AF=0.667;AN=3;AS_AltDP=75;AS_QD=9.13;BaseQRankSum=-0.521;DP=145;ExcessHet=0.0000;FS=2.155;MQ=60.00;MQRankSum=0;QD=9.13;ReadPosRankSum=1.015;SOR=0.779;VarDP=137 GT:AD:DP:GQ:PL:SB 1:26,34:60:99:233,0:15,11,20,14 0/1:36,41:77:99:1018,0,890:17,19,15,26 +chrX 2253626 . C T 4395 . AC=3;AF=1.00;AN=3;AS_AltDP=136;AS_QD=32.30;BaseQRankSum=2.313;DP=143;ExcessHet=0.0000;FS=3.172;MQ=60.00;MQRankSum=0;QD=32.30;ReadPosRankSum=0.241;SOR=0.365;VarDP=137 GT:AD:DP:GQ:PL:SB 1:0,65:65:99:2144,0:0,0,38,27 1/1:1,71:72:99:2281,206,0:0,1,33,38 +chrX 2253841 . A C 762 . AC=2;AF=0.667;AN=3;AS_AltDP=71;AS_QD=5.46;BaseQRankSum=-0.992;DP=149;ExcessHet=0.0000;FS=1.305;MQ=60.00;MQRankSum=0;QD=5.46;ReadPosRankSum=-1.011;SOR=0.572;VarDP=145 GT:AD:DP:GQ:PL:SB 1:37,41:78:85:85,0:18,19,19,22 0/1:37,30:67:99:707,0,1046:15,22,15,15 +chrX 2253986 . G A 798 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=7.33;BaseQRankSum=1.585;DP=119;ExcessHet=0.0000;FS=7.190;MQ=59.95;MQRankSum=0.852;QD=7.33;ReadPosRankSum=2.013;SOR=0.544;VarDP=113 GT:AD:DP:GQ:PL:SB 1:22,24:46:99:110,0:11,11,11,13 0/1:40,27:67:99:718,0,1119:14,26,16,11 +chrX 2254059 . C CA 677.97 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=6.83;BaseQRankSum=0.89;DP=121;ExcessHet=0.0000;FS=3.605;MQ=59.95;MQRankSum=1.037;QD=6.83;ReadPosRankSum=0.138;SOR=0.622;VarDP=105 GT:AD:DP:GQ:PL:SB 1:23,28:51:99:127,0:10,13,13,15 0/1:27,27:54:99:590,0,593:12,15,16,11 +chrX 2254709 . C T 1092 . AC=2;AF=0.667;AN=3;AS_AltDP=64;AS_QD=8.83;BaseQRankSum=3.442;DP=131;ExcessHet=0.0000;FS=1.428;MQ=59.65;MQRankSum=1.364;QD=8.83;ReadPosRankSum=0.967;SOR=0.857;VarDP=127 GT:AD:DP:GQ:PL:SB 1:27,32:59:99:303,0:15,12,20,12 0/1:36,32:68:99:819,0,867:21,15,19,13 +chrX 2254945 . CG C 200.97 . AC=1;AF=0.333;AN=3;AS_AltDP=10;AS_QD=8.57;BaseQRankSum=-0.132;DP=85;ExcessHet=0.0000;FS=6.451;MQ=60.00;MQRankSum=0;QD=8.57;ReadPosRankSum=-0.648;SOR=2.303;VarDP=28 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:53:99:53:0,348 0/1:18,10:28:99:.:240,0,588:9,9,2,8 +chrX 2255233 . A G 144 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=2.85;BaseQRankSum=-0.801;DP=100;ExcessHet=0.0000;FS=16.678;MQ=60.00;MQRankSum=0;QD=2.85;ReadPosRankSum=-2.447;SOR=1.388;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 1:28,33:61:99:.:174,0:18,10,11,22 0/0:.:49:29:36:0,29,1109 +chrX 2255297 . C T 775 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=6.60;BaseQRankSum=0.01;DP=127;ExcessHet=0.0000;FS=5.575;MQ=60.00;MQRankSum=0;QD=6.60;ReadPosRankSum=-1.107;SOR=0.661;VarDP=122 GT:AD:DP:GQ:PL:SB 1:31,32:63:53:53,0:10,21,21,11 0/1:30,29:59:99:752,0,781:16,14,12,17 +chrX 2255311 . T C 645 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=12.05;BaseQRankSum=-0.266;DP=118;ExcessHet=0.0000;FS=0.995;MQ=60.00;MQRankSum=0;QD=12.05;ReadPosRankSum=0.953;SOR=0.846;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:99:60:0,189 0/1:30,26:56:99:.:675,0,814:15,15,12,14 +chrX 2255758 . C T 1199 . AC=2;AF=0.667;AN=3;AS_AltDP=73;AS_QD=10.24;BaseQRankSum=0.808;DP=122;ExcessHet=0.0000;FS=5.800;MQ=60.00;MQRankSum=0;QD=10.24;ReadPosRankSum=0.379;SOR=0.826;VarDP=120 GT:AD:DP:GQ:PL:SB 1:29,31:60:99:114,0:18,11,16,15 0/1:18,42:60:99:1115,0,437:8,10,16,26 +chrX 2256167 . T A 859 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=8.23;BaseQRankSum=0.558;DP=114;ExcessHet=0.0000;FS=0.000;MQ=59.93;MQRankSum=0;QD=8.23;ReadPosRankSum=-0.094;SOR=0.741;VarDP=108 GT:AD:DP:GQ:PL:SB 1:25,26:51:70:70,0:11,14,12,14 0/1:24,33:57:99:819,0,563:12,12,15,18 +chrX 2256337 . C T 674 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=15.64;BaseQRankSum=-0.225;DP=114;ExcessHet=0.0000;FS=6.611;MQ=60.00;MQRankSum=0;QD=15.64;ReadPosRankSum=-0.839;SOR=1.665;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:69:99:69:0,162 0/1:19,26:45:99:.:704,0,481:9,10,18,8 +chrX 2256480 . G C 585 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=11.83;BaseQRankSum=2.125;DP=122;ExcessHet=0.0000;FS=0.000;MQ=59.41;MQRankSum=-1.576;QD=11.83;ReadPosRankSum=-1.484;SOR=0.612;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:69:99:69:0,162 0/1:29,23:52:99:.:615,0,682:17,12,13,10 +chrX 2256791 . C CA 870.97 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=8.58;BaseQRankSum=0.082;DP=122;ExcessHet=0.0000;FS=2.544;MQ=60.00;MQRankSum=0;QD=8.58;ReadPosRankSum=1.277;SOR=0.909;VarDP=106 GT:AD:DP:GQ:PL:SB 1:20,31:51:99:275,0:12,8,15,16 0/1:25,30:55:99:635,0,530:10,15,19,11 +chrX 2256854 . TC T 4237.97 . AC=3;AF=1.00;AN=3;AS_AltDP=132;AS_QD=32.40;DP=143;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.40;SOR=0.854;VarDP=132 GT:AD:DP:GQ:PL:SB 1:0,68:68:99:2212,0:0,0,39,29 1/1:0,64:64:99:2065,193,0:0,0,32,32 +chrX 2257084 . T C 838 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=15.50;BaseQRankSum=-1.605;DP=131;ExcessHet=0.0000;FS=2.356;MQ=60.00;MQRankSum=0;QD=15.50;ReadPosRankSum=-0.966;SOR=0.371;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:73:99:73:0,258 0/1:22,34:56:99:.:868,0,557:8,14,16,18 +chrX 2257334 . C T 973 . AC=2;AF=0.667;AN=3;AS_AltDP=65;AS_QD=8.72;BaseQRankSum=1.472;DP=121;ExcessHet=0.0000;FS=4.548;MQ=60.00;MQRankSum=0;QD=8.72;ReadPosRankSum=-0.402;SOR=0.814;VarDP=115 GT:AD:DP:GQ:PL:SB 1:30,32:62:99:105,0:12,18,18,14 0/1:20,33:53:99:898,0,507:11,9,18,15 +chrX 2257930 . G C 926 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=8.39;BaseQRankSum=0.278;DP=121;ExcessHet=0.0000;FS=1.506;MQ=59.96;MQRankSum=1.171;QD=8.39;ReadPosRankSum=1.094;SOR=0.764;VarDP=114 GT:AD:DP:GQ:PL:SB 1:27,35:62:99:273,0:13,14,17,18 0/1:25,27:52:99:683,0,642:14,11,12,15 +chrX 2258301 . A G 1126 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=12.04;BaseQRankSum=1.646;DP=99;ExcessHet=0.0000;FS=2.713;MQ=59.87;MQRankSum=0;QD=12.04;ReadPosRankSum=0.65;SOR=0.851;VarDP=96 GT:AD:DP:GQ:PL:SB 1:18,30:48:99:451,0:10,8,18,12 0/1:22,26:48:99:705,0,546:9,13,13,13 +chrX 2259109 . C G 657 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=14.02;BaseQRankSum=-0.501;DP=111;ExcessHet=0.0000;FS=4.029;MQ=60.00;MQRankSum=0;QD=14.02;ReadPosRankSum=0.714;SOR=0.321;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:60:62:0,60 0/1:22,27:49:99:.:687,0,579:15,7,15,12 +chrX 2259365 . GATATATATAGATATAT G 1291.97 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=25.60;BaseQRankSum=0.647;DP=119;ExcessHet=0.0000;FS=2.491;MQ=59.85;MQRankSum=-1.055;QD=25.60;ReadPosRankSum=0.192;SOR=0.354;VarDP=52 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:68:60:62:.:.:0,60 0|1:19,33:52:99:.:0|1:2259365_GATATATATAGATATAT_G:1331,0,685:2259365:7,12,16,17 +chrX 2259375 . G *,GAT 1966.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=33,16;AS_QD=0.00,30.16;DP=114;ExcessHet=0.0000;FS=0.000;MQ=59.83;QD=40.94;SOR=0.909;VarDP=49 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:68:60:62:.:.:0,60,60 1|2:0,33,16:49:99:.:1|0:2259365_GATATATATAGATATAT_G:2006,639,687,1376,0,1328:2259365:0,0,22,27 +chrX 2259383 . T G 891 . AC=1;AF=0.333;AN=3;AS_AltDP=42;AS_QD=14.62;BaseQRankSum=0.784;DP=114;ExcessHet=0.0000;FS=1.010;MQ=59.38;MQRankSum=-0.673;QD=14.62;ReadPosRankSum=1.16;SOR=0.536;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 1:21,42:63:99:.:921,0:9,12,20,22 0/0:.:49:99:49:0,120,1800 +chrX 2259387 . GATATATAGATATAT G 904.97 . AC=1;AF=0.333;AN=3;AS_AltDP=43;AS_QD=14.75;BaseQRankSum=1.431;DP=114;ExcessHet=0.0000;FS=1.019;MQ=59.38;MQRankSum=-0.666;QD=14.75;ReadPosRankSum=0.28;SOR=0.499;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 1:21,43:64:99:.:944,0:9,12,21,22 0/0:.:49:99:49:0,120,1800 +chrX 2259395 . GAT *,G,GATAT 2039.97 . AC=1,1,1;AF=0.333,0.333,0.333;AN=3;AS_AltDP=0,37,14;AS_QD=35.32,32.24,25.08;DP=117;ExcessHet=0.0000;FS=0.000;MQ=59.83;QD=40.76;SOR=0.602;VarDP=51 GT:AD:DP:GQ:PL:SB 1:21,43,0,0:64:99:944,0,1879,1879:9,12,21,22 2/3:0,0,37,14:51:99:2079,2086,2103,569,592,498,1515,1518,0,1473:0,0,22,29 +chrX 2259401 . T *,G 1404 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=0,36;AS_QD=0.00,28.68;BaseQRankSum=0.282;DP=115;ExcessHet=0.0000;FS=3.825;MQ=59.83;MQRankSum=-0.859;QD=28.68;ReadPosRankSum=0.919;SOR=0.388;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:21,43,0:64:99:.:.:944,0,1879:.:9,12,21,22 0|2:14,0,36:50:99:0|1:2259365_GATATATATAGATATAT_G:1434,1476,2043,0,567,459:2259365:4,10,16,20 +chrX 2259622 . G T 3576 . AC=3;AF=1.00;AN=3;AS_AltDP=109;AS_QD=33.08;DP=112;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.08;SOR=1.049;VarDP=109 GT:AD:DP:GQ:PL:SB 1:0,52:52:99:1711,0:0,0,33,19 1/1:0,57:57:99:1895,171,0:0,0,30,27 +chrX 2259672 . G A 643 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=11.81;BaseQRankSum=1.135;DP=127;ExcessHet=0.0000;FS=0.000;MQ=59.98;MQRankSum=0.951;QD=11.81;ReadPosRankSum=-1.354;SOR=0.676;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:3:66:0,3 0/1:31,26:57:99:.:673,0,766:18,13,15,11 +chrX 2259912 . G T 4009 . AC=3;AF=1.00;AN=3;AS_AltDP=122;AS_QD=33.11;DP=129;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.11;SOR=0.906;VarDP=122 GT:AD:DP:GQ:PL:SB 1:0,76:76:99:2490,0:0,0,40,36 1/1:0,46:46:99:1549,138,0:0,0,27,19 +chrX 2260011 . G A 800 . AC=2;AF=0.667;AN=3;AS_AltDP=64;AS_QD=6.43;BaseQRankSum=1.117;DP=130;ExcessHet=0.0000;FS=1.472;MQ=60.00;MQRankSum=0;QD=6.43;ReadPosRankSum=-0.412;SOR=0.883;VarDP=129 GT:AD:DP:GQ:PL:SB 1:33,37:70:99:149,0:23,10,24,13 0/1:32,27:59:99:681,0,795:18,14,19,8 +chrX 2260183 . C T 747 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=16.53;BaseQRankSum=0.334;DP=111;ExcessHet=0.0000;FS=0.000;MQ=59.83;MQRankSum=-0.818;QD=16.53;ReadPosRankSum=-0.549;SOR=0.674;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,108 0/1:20,27:47:99:.:777,0,534:8,12,11,16 +chrX 2260595 . G A 511 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=11.04;BaseQRankSum=-0.09;DP=112;ExcessHet=0.0000;FS=1.097;MQ=59.85;MQRankSum=-1.113;QD=11.04;ReadPosRankSum=-1.243;SOR=0.882;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,108 0/1:28,21:49:99:.:541,0,776:12,16,8,13 +chrX 2260665 . T G 727 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=14.56;BaseQRankSum=0.314;DP=115;ExcessHet=0.0000;FS=3.775;MQ=60.00;MQRankSum=0;QD=14.56;ReadPosRankSum=0.533;SOR=0.612;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,108 0/1:24,28:52:99:.:757,0,615:10,14,15,13 +chrX 2260724 . G C 802 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=15.13;BaseQRankSum=-1.638;DP=117;ExcessHet=0.0000;FS=5.563;MQ=60.00;MQRankSum=0;QD=15.13;ReadPosRankSum=-0.552;SOR=0.605;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,108 0/1:24,31:55:99:.:832,0,649:9,15,17,14 +chrX 2261081 . A G 616 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=12.67;BaseQRankSum=-2.86;DP=114;ExcessHet=0.0000;FS=6.035;MQ=60.00;MQRankSum=0;QD=12.67;ReadPosRankSum=1.348;SOR=0.223;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,108 0/1:26,25:51:99:.:646,0,750:19,7,14,11 +chrX 2261432 . T C 3745 . AC=3;AF=1.00;AN=3;AS_AltDP=117;AS_QD=32.26;DP=118;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.26;SOR=0.710;VarDP=117 GT:AD:DP:GQ:PL:SB 1:0,58:58:99:1895,0:0,0,31,27 1/1:0,59:59:99:1880,177,0:0,0,27,32 +chrX 2261628 . T C 910 . AC=2;AF=0.667;AN=3;AS_AltDP=65;AS_QD=7.34;BaseQRankSum=0.897;DP=133;ExcessHet=0.0000;FS=7.872;MQ=59.82;MQRankSum=0;QD=7.34;ReadPosRankSum=-0.116;SOR=0.739;VarDP=128 GT:AD:DP:GQ:PL:SB 1:29,33:62:99:159,0:11,18,21,12 0/1:34,32:66:99:781,0,943:16,18,15,17 +chrX 2261678 . A G 832 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=17.24;BaseQRankSum=-1.806;DP=117;ExcessHet=0.0000;FS=1.117;MQ=60.00;MQRankSum=0;QD=17.24;ReadPosRankSum=-0.91;SOR=0.492;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:99:66:0,119 0/1:19,31:50:99:.:862,0,511:8,11,15,16 +chrX 2261883 . G T 1243 . AC=2;AF=0.667;AN=3;AS_AltDP=70;AS_QD=10.97;BaseQRankSum=0.934;DP=121;ExcessHet=0.0000;FS=2.439;MQ=60.00;MQRankSum=0;QD=10.97;ReadPosRankSum=1.474;SOR=0.808;VarDP=116 GT:AD:DP:GQ:PL:SB 1:26,44:70:99:584,0:12,14,19,25 0/1:20,26:46:99:689,0,517:12,8,13,13 +chrX 2262717 . T C 856 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=7.26;BaseQRankSum=-0.54;DP=123;ExcessHet=0.0000;FS=3.290;MQ=60.00;MQRankSum=0;QD=7.26;ReadPosRankSum=0.987;SOR=0.733;VarDP=122 GT:AD:DP:GQ:PL:SB 1:30,37:67:99:188,0:15,15,17,20 0/1:29,26:55:99:698,0,813:17,12,12,14 +chrX 2262835 . CAG C 4862.97 . AC=3;AF=1.00;AN=3;AS_AltDP=110;AS_QD=35.71;DP=113;ExcessHet=0.0000;FS=0.000;MQ=59.95;QD=44.56;SOR=1.022;VarDP=110 GT:AD:DP:GQ:PL:SB 1:0,55:55:99:2453,0:0,0,33,22 1/1:0,55:55:99:2449,166,0:0,0,30,25 +chrX 2262867 . A G 3836 . AC=3;AF=1.00;AN=3;AS_AltDP=118;AS_QD=32.76;DP=119;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.76;SOR=1.131;VarDP=118 GT:AD:DP:GQ:PL:SB 1:0,62:62:99:2020,0:0,0,39,23 1/1:0,56:56:99:1846,168,0:0,0,31,25 +chrX 2263286 . T C 662 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=10.65;BaseQRankSum=-1.906;DP=104;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=10.65;ReadPosRankSum=0.902;SOR=0.673;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:37:36:0,37 0/1:35,30:65:99:.:692,0,963:15,20,13,17 +chrX 2263512 . CT C 111.97 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=4.08;BaseQRankSum=-0.153;DP=87;ExcessHet=0.0000;FS=10.673;MQ=59.67;MQRankSum=0.836;QD=4.08;ReadPosRankSum=1.974;SOR=1.098;VarDP=37 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:65:37:36:.:.:0,37 0|1:23,14:37:99:.:0|1:2263512_CT_C:151,0,419:2263512:16,7,5,9 +chrX 2264067 . T C 3817 . AC=3;AF=1.00;AN=3;AS_AltDP=117;AS_QD=32.88;DP=122;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.88;SOR=1.022;VarDP=117 GT:AD:DP:GQ:PL:SB 1:0,64:64:99:2155,0:0,0,28,36 1/1:0,53:53:99:1692,158,0:0,0,22,31 +chrX 2264317 . C T 676 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=10.86;BaseQRankSum=-1.421;DP=135;ExcessHet=0.0000;FS=6.650;MQ=59.65;MQRankSum=-0.142;QD=10.86;ReadPosRankSum=-1.11;SOR=1.101;VarDP=65 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:66:99:66:.:.:0,328 0|1:34,31:65:99:.:0|1:2264317_C_T:706,0,936:2264317:19,15,12,19 +chrX 2264694 . C T 903 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=17.60;BaseQRankSum=0.513;DP=121;ExcessHet=0.0000;FS=14.558;MQ=59.56;MQRankSum=0;QD=17.60;ReadPosRankSum=0.801;SOR=1.616;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:99:66:0,328 0/1:17,36:53:99:.:933,0,333:6,11,25,11 +chrX 2264739 . A C 512 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=4.93;BaseQRankSum=-0.651;DP=113;ExcessHet=0.0000;FS=0.000;MQ=59.76;MQRankSum=1.583;QD=4.93;ReadPosRankSum=0.064;SOR=0.716;VarDP=110 GT:AD:DP:GQ:PL:SB 1:26,31:57:5:5,0:14,12,19,12 0/1:31,22:53:99:537,0,869:19,12,12,10 +chrX 2264864 . T TGCAGGGAGCACTGTACGCAGAGCACTTGTGCCAAGCACAC 1563.97 . AC=1;AF=0.333;AN=3;AS_AltDP=41;AS_QD=25.44;BaseQRankSum=-0.953;DP=78;ExcessHet=0.0000;FS=0.000;MQ=59.64;MQRankSum=-1.021;QD=25.44;ReadPosRankSum=0.036;SOR=0.762;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:35:1:0,35 0/1:22,41:63:99:.:1603,0,797:10,12,18,23 +chrX 2264954 . C T 833 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=15.98;BaseQRankSum=0.247;DP=55;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=15.98;ReadPosRankSum=1.497;SOR=0.818;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:35:1:0,35 0/1:22,32:54:99:.:863,0,466:11,11,17,15 +chrX 2265838 . G A 276 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=8.50;BaseQRankSum=-0.631;DP=64;ExcessHet=0.0000;FS=7.162;MQ=50.38;MQRankSum=1.208;QD=8.50;ReadPosRankSum=-0.819;SOR=1.374;VarDP=36 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:33:62:28:0,62 0/1:21,15:36:99:.:306,0,496:9,12,10,5 +chrX 2266201 . T C 90 . AC=1;AF=0.333;AN=3;AS_AltDP=9;AS_QD=4.00;BaseQRankSum=-1.85;DP=61;ExcessHet=0.0000;FS=9.265;MQ=52.51;MQRankSum=0.591;QD=4.00;ReadPosRankSum=1.381;SOR=2.042;VarDP=30 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:33:62:28:0,62 0/1:21,9:30:99:.:120,0,537:9,12,7,2 +chrX 2266522 . G A 1920 . AC=3;AF=1.00;AN=3;AS_AltDP=66;AS_QD=27.86;BaseQRankSum=2.071;DP=71;ExcessHet=0.0000;FS=8.973;MQ=57.89;MQRankSum=1.169;QD=27.86;ReadPosRankSum=-0.857;SOR=1.406;VarDP=70 GT:AD:DP:GQ:PL:SB 1:4,36:40:99:1004,0:1,3,21,15 1/1:0,30:30:89:946,89,0:0,0,23,7 +chrX 2267520 . G A 690 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=15.65;BaseQRankSum=0.799;DP=106;ExcessHet=0.0000;FS=4.351;MQ=59.52;MQRankSum=-1.279;QD=15.65;ReadPosRankSum=0.364;SOR=1.473;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,318 0/1:21,25:46:99:.:720,0,557:11,10,17,8 +chrX 2267543 . C CA 558.97 . AC=2;AF=0.667;AN=3;AS_AltDP=49;AS_QD=6.95;BaseQRankSum=0.344;DP=115;ExcessHet=0.0000;FS=2.924;MQ=60.00;MQRankSum=0;QD=6.95;ReadPosRankSum=-0.308;SOR=0.402;VarDP=86 GT:AD:DP:GQ:PL:SB 1:18,24:42:99:128,0:11,7,12,12 0/1:19,25:44:99:470,0,359:12,7,14,11 +chrX 2267900 . T C 605 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=11.98;BaseQRankSum=-0.274;DP=120;ExcessHet=0.0000;FS=3.855;MQ=60.00;MQRankSum=0;QD=11.98;ReadPosRankSum=0.518;SOR=0.931;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:74:25:64:0,25 0/1:29,24:53:99:.:635,0,809:16,13,10,14 +chrX 2268141 . T C 515 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=9.91;BaseQRankSum=-0.035;DP=123;ExcessHet=0.0000;FS=2.299;MQ=60.00;MQRankSum=0;QD=9.91;ReadPosRankSum=0.017;SOR=0.604;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:74:25:64:0,25 0/1:34,21:55:99:.:545,0,971:15,19,11,10 +chrX 2268390 . A G 805 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=14.15;BaseQRankSum=-0.413;DP=124;ExcessHet=0.0000;FS=3.713;MQ=60.00;MQRankSum=0;QD=14.15;ReadPosRankSum=0.746;SOR=0.301;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:74:25:64:0,25 0/1:27,32:59:99:.:835,0,711:18,9,17,15 +chrX 2269118 . T C 1037 . AC=1;AF=0.333;AN=3;AS_AltDP=39;AS_QD=15.46;BaseQRankSum=-1.808;DP=135;ExcessHet=0.0000;FS=10.205;MQ=59.93;MQRankSum=-0.848;QD=15.46;ReadPosRankSum=-0.926;SOR=1.284;VarDP=69 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:74:25:64:0,25 0/1:30,39:69:99:.:1067,0,799:13,17,25,14 +chrX 2269426 . G A 858 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=14.56;BaseQRankSum=-0.292;DP=126;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.56;ReadPosRankSum=-1.187;SOR=0.620;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:74:25:64:0,25 0/1:28,33:61:99:.:888,0,721:13,15,16,17 +chrX 2269648 . T C 265 . AC=1;AF=0.333;AN=3;AS_AltDP=45;AS_QD=3.73;BaseQRankSum=-1.078;DP=148;ExcessHet=0.0000;FS=0.855;MQ=60.00;MQRankSum=0;QD=3.73;ReadPosRankSum=-0.248;SOR=0.636;VarDP=79 GT:AD:DP:GQ:MIN_DP:PL:SB 1:34,45:79:99:.:295,0:18,16,22,23 0/0:.:66:99:66:0,120,1800 +chrX 2269886 . G A 5912 . AC=3;AF=1.00;AN=3;AS_AltDP=135;AS_QD=26.56;DP=139;ExcessHet=0.0000;FS=0.000;MQ=59.99;QD=44.01;SOR=0.708;VarDP=135 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,72:72:99:.:.:3196,0:.:0,0,34,38 1|1:0,63:63:99:0|1:2269886_G_A:2746,189,0:2269886:0,0,33,30 +chrX 2269892 . G C 5844 . AC=3;AF=1.00;AN=3;AS_AltDP=134;AS_QD=33.32;DP=138;ExcessHet=0.0000;FS=0.000;MQ=59.99;QD=43.84;SOR=0.723;VarDP=134 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,72:72:99:.:.:3162,0:.:0,0,33,39 1|1:0,62:62:99:0|1:2269886_G_A:2712,186,0:2269886:0,0,33,29 +chrX 2270543 . A G 4361 . AC=3;AF=1.00;AN=3;AS_AltDP=114;AS_QD=34.71;DP=120;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=38.52;SOR=0.693;VarDP=114 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,60:60:99:.:.:2374,0:.:0,0,29,31 1|1:0,54:54:99:0|1:2270543_A_G:2017,162,0:2270543:0,0,28,26 +chrX 2270544 . G T 1451 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=12.99;BaseQRankSum=-0.721;DP=119;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=12.99;ReadPosRankSum=-0.295;SOR=0.691;VarDP=114 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:24,36:60:99:.:.:529,0:.:12,12,17,19 0|1:29,25:54:99:0|1:2270543_A_G:952,0,1111:2270543:14,15,14,11 +chrX 2270545 . A T 1451 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=12.99;BaseQRankSum=-0.443;DP=116;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=12.99;ReadPosRankSum=-0.599;SOR=0.691;VarDP=114 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:24,36:60:99:.:.:529,0:.:12,12,17,19 0|1:29,25:54:99:0|1:2270543_A_G:952,0,1111:2270543:14,15,14,11 +chrX 2270778 . C A 3399 . AC=3;AF=1.00;AN=3;AS_AltDP=105;AS_QD=32.66;DP=108;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.66;SOR=0.921;VarDP=105 GT:AD:DP:GQ:PL:SB 1:0,54:54:99:1804,0:0,0,33,21 1/1:0,51:51:99:1625,153,0:0,0,25,26 +chrX 2270856 . C G 627 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=11.73;BaseQRankSum=1.724;DP=115;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=11.73;ReadPosRankSum=0.594;SOR=0.665;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:58:99:58:0,1623 0/1:31,25:56:99:.:657,0,780:20,11,16,9 +chrX 2270886 . A G 3647 . AC=3;AF=1.00;AN=3;AS_AltDP=107;AS_QD=34.36;DP=110;ExcessHet=0.0000;FS=0.000;MQ=59.63;QD=34.36;SOR=1.265;VarDP=107 GT:AD:DP:GQ:PL:SB 1:0,54:54:99:1666,0:0,0,31,23 1/1:0,53:53:99:2011,159,0:0,0,35,18 +chrX 2270973 . G GACCAATCAGCACTCTGTAAAATGC 1074.97 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=16.38;BaseQRankSum=1.411;DP=137;ExcessHet=0.0000;FS=2.021;MQ=59.23;MQRankSum=-2.03;QD=16.38;ReadPosRankSum=-1.945;SOR=0.860;VarDP=68 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,1530 0/1:34,34:68:99:.:1114,0,1042:18,16,15,19 +chrX 2271482 . C A 1122 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=10.97;BaseQRankSum=1.15;DP=107;ExcessHet=0.0000;FS=6.161;MQ=60.00;MQRankSum=0;QD=10.97;ReadPosRankSum=0.485;SOR=0.910;VarDP=105 GT:AD:DP:GQ:PL:SB 1:23,36:59:99:451,0:12,11,20,16 0/1:21,25:46:99:701,0,591:8,13,15,10 +chrX 2271822 . A G 1046 . AC=2;AF=0.667;AN=3;AS_AltDP=71;AS_QD=8.34;BaseQRankSum=-0.009;DP=131;ExcessHet=0.0000;FS=3.189;MQ=59.89;MQRankSum=0.716;QD=8.34;ReadPosRankSum=-0.265;SOR=0.614;VarDP=129 GT:AD:DP:GQ:PL:SB 1:30,34:64:67:67,0:16,14,15,19 0/1:28,37:65:99:1009,0,718:16,12,19,18 +chrX 2272192 . C T 1090 . AC=1;AF=0.333;AN=3;AS_AltDP=41;AS_QD=16.72;BaseQRankSum=1.949;DP=131;ExcessHet=0.0000;FS=2.101;MQ=60.00;MQRankSum=0;QD=16.72;ReadPosRankSum=0.116;SOR=0.507;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:35:61:0,35 0/1:26,41:67:99:.:1120,0,603:11,15,21,20 +chrX 2272394 . C G 4183 . AC=3;AF=1.00;AN=3;AS_AltDP=127;AS_QD=33.17;DP=134;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.17;SOR=1.448;VarDP=127 GT:AD:DP:GQ:PL:SB 1:0,69:69:99:2298,0:0,0,26,43 1/1:0,58:58:99:1915,174,0:0,0,19,39 +chrX 2272724 . A C 3798 . AC=3;AF=1.00;AN=3;AS_AltDP=112;AS_QD=34.18;DP=116;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=34.18;SOR=0.844;VarDP=112 GT:AD:DP:GQ:PL:SB 1:0,63:63:99:2157,0:0,0,33,30 1/1:0,49:49:99:1671,147,0:0,0,27,22 +chrX 2273207 . C A 3574 . AC=3;AF=1.00;AN=3;AS_AltDP=109;AS_QD=33.06;DP=110;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.06;SOR=0.749;VarDP=109 GT:AD:DP:GQ:PL:SB 1:0,60:60:99:2016,0:0,0,26,34 1/1:0,49:49:99:1588,147,0:0,0,30,19 +chrX 2273930 . A C 4534 . AC=3;AF=1.00;AN=3;AS_AltDP=144;AS_QD=31.69;DP=147;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.69;SOR=0.749;VarDP=144 GT:AD:DP:GQ:PL:SB 1:0,76:76:99:2381,0:0,0,33,43 1/1:0,68:68:99:2183,204,0:0,0,37,31 +chrX 2274147 . C T 1213 . AC=2;AF=0.667;AN=3;AS_AltDP=72;AS_QD=9.49;BaseQRankSum=0.19;DP=139;ExcessHet=0.0000;FS=7.961;MQ=59.93;MQRankSum=1.178;QD=9.49;ReadPosRankSum=-0.29;SOR=0.624;VarDP=131 GT:AD:DP:GQ:PL:SB 1:31,41:72:99:373,0:21,10,20,21 0/1:28,31:59:99:870,0,772:14,14,13,18 +chrX 2274585 . C CT 169.97 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=6.33;BaseQRankSum=1.086;DP=93;ExcessHet=0.0000;FS=5.170;MQ=59.58;MQRankSum=-0.22;QD=6.33;ReadPosRankSum=-1.313;SOR=0.709;VarDP=33 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:47:16:47:0,16 0/1:19,14:33:99:.:209,0,306:12,7,6,8 +chrX 2275266 . G T 718 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=14.96;BaseQRankSum=-0.64;DP=113;ExcessHet=0.0000;FS=1.113;MQ=60.00;MQRankSum=0;QD=14.96;ReadPosRankSum=1.149;SOR=0.976;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,100 0/1:23,27:50:99:.:748,0,629:13,10,17,10 +chrX 2275343 . C CA,CAAAAAA 1428.97 . AC=1,2;AF=0.333,0.667;AN=3;AS_AltDP=28,34;AS_QD=28.64,31.82;DP=89;ExcessHet=0.0000;FS=0.000;MQ=59.63;QD=23.68;SOR=1.765;VarDP=62 GT:AD:DP:GQ:PL:SB 2:0,16,18:34:71:504,71,0:0,0,24,10 1/2:0,12,16:28:99:964,650,595,262,0,411:0,0,19,9 +chrX 2275514 . CA C 2529.97 . AC=3;AF=1.00;AN=3;AS_AltDP=95;AS_QD=27.04;DP=115;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=27.04;SOR=1.354;VarDP=95 GT:AD:DP:GQ:PL:SB 1:0,49:49:99:1315,0:0,0,18,31 1/1:0,46:46:99:1254,138,0:0,0,17,29 +chrX 2275805 . A G 503 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=10.88;BaseQRankSum=0.448;DP=106;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=10.88;ReadPosRankSum=0.162;SOR=0.730;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:94:56:0,94 0/1:28,21:49:99:.:533,0,731:11,17,8,13 +chrX 2275837 . A T 4111 . AC=3;AF=1.00;AN=3;AS_AltDP=93;AS_QD=25.45;DP=95;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.53;SOR=0.758;VarDP=93 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,50:50:99:.:.:2237,0:.:0,0,25,25 1|1:0,43:43:99:0|1:2275837_A_T:1904,129,0:2275837:0,0,20,23 +chrX 2275838 . A T 4111 . AC=3;AF=1.00;AN=3;AS_AltDP=93;AS_QD=29.87;DP=94;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.53;SOR=0.758;VarDP=93 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,50:50:99:.:.:2237,0:.:0,0,25,25 1|1:0,43:43:99:0|1:2275837_A_T:1904,129,0:2275837:0,0,20,23 +chrX 2276138 . G A 969 . AC=1;AF=0.500;AN=2;AS_AltDP=36;AS_QD=17.53;BaseQRankSum=-1.193;DP=134;ExcessHet=0.0000;FS=2.349;MQ=59.80;MQRankSum=-0.727;QD=17.53;ReadPosRankSum=1.217;SOR=1.005;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB .:.:72:0:72:0,0 0/1:21,36:57:99:.:999,0,539:10,11,21,15 +chrX 2276348 . G A 753 . AC=2;AF=0.667;AN=3;AS_AltDP=67;AS_QD=5.33;BaseQRankSum=0.808;DP=150;ExcessHet=0.0000;FS=4.954;MQ=60.00;MQRankSum=0;QD=5.33;ReadPosRankSum=-0.586;SOR=1.033;VarDP=147 GT:AD:DP:GQ:PL:SB 1:38,44:82:99:219,0:19,19,19,25 0/1:42,23:65:99:564,0,1153:22,20,9,14 +chrX 2276419 . G A 1038 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=20.94;BaseQRankSum=-1.412;DP=115;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=20.94;ReadPosRankSum=0.834;SOR=0.601;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:79:39:62:0,39 0/1:14,37:51:99:.:1068,0,333:6,8,17,20 +chrX 2282343 . A G 501 . AC=1;AF=1.00;AN=1;AS_AltDP=17;AS_QD=29.50;BaseQRankSum=-0.177;DP=53;ExcessHet=0.0000;FS=0.000;MQ=57.58;MQRankSum=2.117;QD=29.50;ReadPosRankSum=1.737;SOR=0.269;VarDP=18 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,17:18:99:.:531,0:1,0,9,8 ./.:.:33:0:33:0,0,0 +chrX 2282502 . TAGAG T 541.97 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=13.51;BaseQRankSum=0.764;DP=87;ExcessHet=0.0000;FS=1.309;MQ=60.00;MQRankSum=0;QD=13.51;ReadPosRankSum=0.188;SOR=1.032;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:39:99:39:0,709 0/1:27,16:43:99:.:581,0,1030:14,10,10,5 +chrX 2282581 . A AGAGAGAGAAGAAAGAGGG 179.97 . AC=1;AF=0.333;AN=3;AS_AltDP=7;AS_QD=14.60;BaseQRankSum=1.111;DP=71;ExcessHet=0.0000;FS=3.310;MQ=60.00;MQRankSum=0;QD=14.60;ReadPosRankSum=-0.506;SOR=2.546;VarDP=15 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:39:99:39:0,709 0/1:8,7:15:99:.:219,0,288:6,2,7,0 +chrX 2282603 . A AGAGAAGAAAGAGGGGAGG 296.97 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=12.44;BaseQRankSum=-1.349;DP=65;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=12.44;ReadPosRankSum=-2.837;SOR=1.022;VarDP=27 GT:AD:DP:GQ:MIN_DP:PL:SB 1:9,18:27:99:.:336,0:6,3,13,5 0/0:.:29:33:26:0,33,708 +chrX 2282812 . AAGAG A 319.97 . AC=2;AF=0.667;AN=3;AS_AltDP=21;AS_QD=10.56;BaseQRankSum=2.404;DP=42;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=10.56;ReadPosRankSum=1.534;SOR=0.631;VarDP=34 GT:AD:DP:GQ:PL:SB 1:12,14:26:80:80,0:8,4,10,4 0/1:1,7:8:21:279,0,21:1,0,4,3 +chrX 2283004 . G A 268 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=10.64;BaseQRankSum=0.423;DP=91;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=10.64;ReadPosRankSum=1.51;SOR=0.941;VarDP=28 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,352 0/1:16,12:28:99:.:298,0,431:11,5,9,3 +chrX 2283340 . C G 886 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=8.04;BaseQRankSum=0.464;DP=119;ExcessHet=0.0000;FS=4.583;MQ=60.00;MQRankSum=0;QD=8.04;ReadPosRankSum=0.347;SOR=0.388;VarDP=114 GT:AD:DP:GQ:PL:SB 1:28,34:62:99:179,0:12,16,15,19 0/1:25,27:52:99:737,0,673:9,16,15,12 +chrX 2283893 . C T 604 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=12.94;BaseQRankSum=1.153;DP=124;ExcessHet=0.0000;FS=4.348;MQ=59.59;MQRankSum=-1.022;QD=12.94;ReadPosRankSum=-1.583;SOR=1.552;VarDP=49 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:73:99:73:.:.:0,243 0|1:26,23:49:99:.:0|1:2283893_C_T:634,0,662:2283893:15,11,17,6 +chrX 2283895 . TTCATTCCTTTGAATTCACTCATTCCTTTGAATTCAC T 3350.97 . AC=3;AF=1.00;AN=3;AS_AltDP=84;AS_QD=28.56;DP=125;ExcessHet=0.0000;FS=0.000;MQ=59.24;QD=40.36;SOR=1.075;VarDP=84 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,47:47:99:.:.:1871,0:.:0,0,25,22 1|1:0,37:37:99:0|1:2283893_C_T:1519,114,0:2283893:0,0,24,13 +chrX 2284187 . TTTCAA T 1030.97 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=17.83;BaseQRankSum=2.003;DP=124;ExcessHet=0.0000;FS=7.370;MQ=60.00;MQRankSum=0;QD=17.83;ReadPosRankSum=-1.059;SOR=0.204;VarDP=60 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:61:99:61:.:.:0,245 0|1:32,28:60:99:.:0|1:2284187_TTTCAA_T:1070,0,1228:2284187:9,23,13,15 +chrX 2284196 . A C 959 . AC=2;AF=0.667;AN=3;AS_AltDP=74;AS_QD=7.67;BaseQRankSum=-0.161;DP=131;ExcessHet=0.0000;FS=21.272;MQ=60.00;MQRankSum=0;QD=7.67;ReadPosRankSum=1.611;SOR=1.563;VarDP=129 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:27,41:68:99:.:.:127,0:.:18,9,14,27 0|1:28,33:61:99:1|0:2284187_TTTCAA_T:862,0,1067:2284187:13,15,10,23 +chrX 2284365 . C CAA 5957.97 . AC=3;AF=1.00;AN=3;AS_AltDP=134;AS_QD=27.26;DP=144;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.75;SOR=0.957;VarDP=134 GT:AD:DP:GQ:PL:SB 1:0,72:72:99:3219,0:0,0,41,31 1/1:0,62:62:99:2778,187,0:0,0,34,28 +chrX 2284404 . TTGAA T 4661.97 . AC=3;AF=1.00;AN=3;AS_AltDP=105;AS_QD=25.73;DP=136;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.77;SOR=0.751;VarDP=105 GT:AD:DP:GQ:PL:SB 1:0,62:62:99:2791,0:0,0,32,30 1/1:0,43:43:99:1910,130,0:0,0,19,24 +chrX 2284462 . A AC 908.97 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=15.29;BaseQRankSum=-0.775;DP=133;ExcessHet=0.0000;FS=3.410;MQ=60.00;MQRankSum=0;QD=15.29;ReadPosRankSum=-1.67;SOR=0.921;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:64:68:0,64 0/1:34,28:62:99:.:948,0,1189:18,16,12,16 +chrX 2284746 . T G 652 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=12.18;BaseQRankSum=-0.129;DP=126;ExcessHet=0.0000;FS=2.251;MQ=60.00;MQRankSum=0;QD=12.18;ReadPosRankSum=1.031;SOR=1.056;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:64:68:0,64 0/1:31,25:56:99:.:682,0,860:16,15,15,10 +chrX 2286692 . G GA 2677.97 . AC=3;AF=1.00;AN=3;AS_AltDP=106;AS_QD=25.63;DP=125;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=25.63;SOR=0.731;VarDP=106 GT:AD:DP:GQ:PL:SB 1:0,67:67:99:1726,0:0,0,34,33 1/1:0,39:39:99:991,115,0:0,0,18,21 +chrX 2288126 . TA T 2990.97 . AC=3;AF=1.00;AN=3;AS_AltDP=101;AS_QD=30.00;DP=111;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.00;SOR=0.941;VarDP=101 GT:AD:DP:GQ:PL:SB 1:0,52:52:99:1555,0:0,0,18,30 1/1:0,49:49:99:1475,147,0:0,0,25,24 +chrX 2288434 . A G 3715 . AC=3;AF=1.00;AN=3;AS_AltDP=116;AS_QD=32.01;BaseQRankSum=2.135;DP=122;ExcessHet=0.0000;FS=3.692;MQ=59.84;MQRankSum=0;QD=32.01;ReadPosRankSum=0.514;SOR=0.742;VarDP=117 GT:AD:DP:GQ:PL:SB 1:0,63:63:99:2078,0:0,0,38,25 1/1:1,53:54:99:1667,152,0:0,1,29,24 +chrX 2289891 . C T 580 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=12.71;BaseQRankSum=1.81;DP=119;ExcessHet=0.0000;FS=2.497;MQ=60.00;MQRankSum=0;QD=12.71;ReadPosRankSum=-0.176;SOR=0.673;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:70:99:70:0,238 0/1:26,22:48:99:.:610,0,699:11,15,12,10 +chrX 2290429 . T C 717 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=6.44;BaseQRankSum=-0.964;DP=120;ExcessHet=0.0000;FS=0.694;MQ=60.00;MQRankSum=0;QD=6.44;ReadPosRankSum=-0.482;SOR=0.576;VarDP=116 GT:AD:DP:GQ:PL:SB 1:25,30:55:99:113,0:15,10,14,16 0/1:35,26:61:99:634,0,974:18,17,15,11 +chrX 2290589 . A G 1230 . AC=2;AF=0.667;AN=3;AS_AltDP=71;AS_QD=10.16;BaseQRankSum=1.665;DP=128;ExcessHet=0.0000;FS=0.675;MQ=60.00;MQRankSum=0;QD=10.16;ReadPosRankSum=0.673;SOR=0.746;VarDP=124 GT:AD:DP:GQ:PL:SB 1:27,40:67:99:467,0:12,15,20,20 0/1:26,31:57:99:793,0,617:14,12,17,14 +chrX 2290643 . A G 594 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=10.40;BaseQRankSum=1.435;DP=129;ExcessHet=0.0000;FS=0.986;MQ=60.00;MQRankSum=0;QD=10.40;ReadPosRankSum=-0.559;SOR=0.859;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,589 0/1:36,24:60:99:.:624,0,956:18,18,13,11 +chrX 2291048 . G A 1490 . AC=2;AF=0.667;AN=3;AS_AltDP=72;AS_QD=12.36;BaseQRankSum=-0.789;DP=123;ExcessHet=0.0000;FS=1.459;MQ=60.00;MQRankSum=0;QD=12.36;ReadPosRankSum=-0.536;SOR=0.864;VarDP=123 GT:AD:DP:GQ:PL:SB 1:20,44:64:99:794,0:6,14,23,21 0/1:31,28:59:99:726,0,860:18,13,8,20 +chrX 2291097 . G A 1313 . AC=2;AF=0.667;AN=3;AS_AltDP=64;AS_QD=12.55;BaseQRankSum=-0.498;DP=109;ExcessHet=0.0000;FS=2.559;MQ=60.00;MQRankSum=0;QD=12.55;ReadPosRankSum=0.97;SOR=0.988;VarDP=107 GT:AD:DP:GQ:PL:SB 1:19,41:60:99:750,0:9,10,21,20 0/1:24,23:47:99:593,0,663:12,12,6,17 +chrX 2291143 . C T 481 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=12.46;BaseQRankSum=-0.321;DP=108;ExcessHet=0.0000;FS=2.694;MQ=60.00;MQRankSum=0;QD=12.46;ReadPosRankSum=-1.487;SOR=0.709;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:99:66:0,665 0/1:21,20:41:99:.:511,0,540:12,9,9,11 +chrX 2291287 . T C 631 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=4.90;BaseQRankSum=2.064;DP=144;ExcessHet=0.0000;FS=5.240;MQ=60.00;MQRankSum=0;QD=4.90;ReadPosRankSum=0.056;SOR=0.786;VarDP=135 GT:AD:DP:GQ:PL:SB 1:34,38:72:99:175,0:15,19,19,19 0/1:43,20:63:99:486,0,1155:20,23,13,7 +chrX 2291631 . C G 633 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=9.47;BaseQRankSum=0.468;DP=132;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=9.47;ReadPosRankSum=-0.207;SOR=0.728;VarDP=70 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,169 0/1:41,29:70:99:.:663,0,1584:16,25,11,18 +chrX 2291634 . G C 997 . AC=1;AF=0.500;AN=2;AS_AltDP=41;AS_QD=14.46;BaseQRankSum=-1.439;DP=138;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.46;ReadPosRankSum=-0.073;SOR=0.740;VarDP=71 GT:AD:DP:GQ:MIN_DP:PL:SB .:.:65:0:65:0,0 0/1:30,41:71:99:.:1027,0,1084:12,18,16,25 +chrX 2291708 . AC A 555.97 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=5.22;BaseQRankSum=1.232;DP=118;ExcessHet=0.0000;FS=2.394;MQ=59.96;MQRankSum=0;QD=5.22;ReadPosRankSum=0.594;SOR=0.937;VarDP=114 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:32,32:64:25:.:.:25,0:.:20,12,21,11 0|1:27,23:50:99:0|1:2291708_AC_A:570,0,769:2291708:11,16,11,12 +chrX 2291709 . CT *,C 1480.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=23,23;AS_QD=0.00,28.26;DP=118;ExcessHet=0.0000;FS=2.762;MQ=60.00;QD=33.04;SOR=0.453;VarDP=46 GT:AD:DP:GQ:PL:SB 1:32,32,0:64:25:25,0,1072:20,12,21,11 1/2:0,23,23:46:99:1520,622,769,701,0,570:0,0,22,24 +chrX 2291710 . T *,G 2541 . AC=1,2;AF=0.333,0.667;AN=3;AS_AltDP=49,55;AS_QD=0.00,33.65;DP=118;ExcessHet=0.0000;FS=0.000;MQ=59.96;QD=24.72;SOR=0.994;VarDP=104 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 2:0,26,32:58:25:.:.:1051,25,0:.:0,0,37,21 1|2:0,23,23:46:99:0|1:2291708_AC_A:1520,701,570,622,0,769:2291708:0,0,22,24 +chrX 2291896 . A ATTT 537.97 . AC=2;AF=0.667;AN=3;AS_AltDP=35;AS_QD=9.02;BaseQRankSum=1.09;DP=100;ExcessHet=0.0000;FS=4.933;MQ=57.76;MQRankSum=-0.625;QD=9.02;ReadPosRankSum=0.925;SOR=0.414;VarDP=64 GT:AD:DP:GQ:PL:SB 1:17,21:38:99:130,0:6,11,11,10 0/1:12,14:26:99:447,0,349:5,7,7,7 +chrX 2292030 . A G 588 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=11.88;BaseQRankSum=-1.727;DP=125;ExcessHet=0.0000;FS=0.000;MQ=59.86;MQRankSum=-1.001;QD=11.88;ReadPosRankSum=0.678;SOR=0.698;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,167 0/1:27,25:52:99:.:618,0,738:13,14,12,13 +chrX 2292382 . G C 4011 . AC=3;AF=1.00;AN=3;AS_AltDP=119;AS_QD=33.96;DP=127;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.96;SOR=1.512;VarDP=119 GT:AD:DP:GQ:PL:SB 1:0,64:64:99:2175,0:0,0,41,23 1/1:0,55:55:99:1866,165,0:0,0,37,18 +chrX 2293147 . G C 506 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=9.24;BaseQRankSum=-2.627;DP=128;ExcessHet=0.0000;FS=9.206;MQ=60.00;MQRankSum=0;QD=9.24;ReadPosRankSum=-0.793;SOR=1.239;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:70:45:68:0,45 0/1:33,25:58:99:.:536,0,876:14,19,16,9 +chrX 2293185 . A G 3955 . AC=3;AF=1.00;AN=3;AS_AltDP=122;AS_QD=32.66;DP=130;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.66;SOR=0.760;VarDP=122 GT:AD:DP:GQ:PL:SB 1:0,68:68:99:2198,0:0,0,31,37 1/1:0,54:54:99:1787,162,0:0,0,28,26 +chrX 2293253 . GT G,GTT 1916.97 . AC=1,2;AF=0.333,0.667;AN=3;AS_AltDP=50,49;AS_QD=21.18,27.82;DP=119;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=19.76;SOR=0.797;VarDP=99 GT:AD:DP:GQ:PL:SB 2:0,25,30:55:99:739,218,0:0,0,27,28 1/2:0,25,19:44:99:1217,706,679,593,0,936:0,0,25,19 +chrX 2293270 . C T 838 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=7.68;BaseQRankSum=1.916;DP=121;ExcessHet=0.0000;FS=0.698;MQ=60.00;MQRankSum=0;QD=7.68;ReadPosRankSum=0.873;SOR=0.667;VarDP=113 GT:AD:DP:GQ:PL:SB 1:26,34:60:99:212,0:10,16,20,14 0/1:32,21:53:99:656,0,1111:18,14,8,13 +chrX 2293890 . G A 690 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=7.50;BaseQRankSum=1.397;DP=99;ExcessHet=0.0000;FS=0.767;MQ=60.00;MQRankSum=0;QD=7.50;ReadPosRankSum=1.76;SOR=0.549;VarDP=96 GT:AD:DP:GQ:PL:SB 1:20,26:46:99:189,0:11,9,13,13 0/1:29,21:50:99:531,0,764:16,13,11,10 +chrX 2294058 . C CAG 3678.97 . AC=3;AF=1.00;AN=3;AS_AltDP=98;AS_QD=31.43;DP=122;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=37.94;SOR=0.776;VarDP=98 GT:AD:DP:GQ:PL:SB 1:0,62:62:99:2352,0:0,0,37,25 1/1:0,36:36:99:1366,108,0:0,0,14,22 +chrX 2294664 . C CA,CAA 2087.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=36,48;AS_QD=25.90,29.54;DP=112;ExcessHet=0.0000;FS=0.000;MQ=59.76;QD=25.32;SOR=0.843;VarDP=84 GT:AD:DP:GQ:PL:SB 1:0,19,19:38:43:747,0,43:0,0,17,21 1/2:0,17,29:46:99:1380,681,544,404,0,302:0,0,28,18 +chrX 2294808 . G GA 933.97 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=9.36;BaseQRankSum=0.665;DP=116;ExcessHet=0.0000;FS=3.617;MQ=60.00;MQRankSum=0;QD=9.36;ReadPosRankSum=-0.286;SOR=0.558;VarDP=104 GT:AD:DP:GQ:PL:SB 1:22,29:51:99:215,0:10,12,15,14 0/1:24,29:53:99:758,0,608:10,14,15,14 +chrX 2294885 . T C 3304 . AC=3;AF=1.00;AN=3;AS_AltDP=104;AS_QD=32.06;DP=112;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.06;SOR=1.201;VarDP=104 GT:AD:DP:GQ:PL:SB 1:0,52:52:99:1640,0:0,0,18,34 1/1:0,52:52:99:1694,155,0:0,0,23,29 +chrX 2295041 . G A 4346 . AC=3;AF=1.00;AN=3;AS_AltDP=136;AS_QD=32.18;DP=140;ExcessHet=0.0000;FS=0.000;MQ=59.87;QD=32.18;SOR=0.693;VarDP=136 GT:AD:DP:GQ:PL:SB 1:0,62:62:99:1995,0:0,0,31,31 1/1:0,74:74:99:2381,222,0:0,0,37,37 +chrX 2295245 . TA T 3752.97 . AC=3;AF=1.00;AN=3;AS_AltDP=122;AS_QD=31.08;DP=132;ExcessHet=0.0000;FS=0.000;MQ=50.98;QD=31.08;SOR=0.945;VarDP=122 GT:AD:DP:GQ:PL:SB 1:0,52:52:99:1613,0:0,0,30,22 1/1:0,70:70:99:2179,211,0:0,0,38,32 +chrX 2295423 . T TG 717.97 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=6.20;BaseQRankSum=0.108;DP=137;ExcessHet=0.0000;FS=10.197;MQ=51.87;MQRankSum=0.126;QD=6.20;ReadPosRankSum=-1.066;SOR=1.549;VarDP=122 GT:AD:DP:GQ:PL:SB 1:26,31:57:99:149,0:12,14,8,23 0/1:39,26:65:99:608,0,1019:19,20,10,16 +chrX 2296956 . A G 307 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=12.04;BaseQRankSum=-2.574;DP=29;ExcessHet=0.0000;FS=0.000;MQ=52.21;MQRankSum=0.809;QD=12.04;ReadPosRankSum=-0.279;SOR=0.804;VarDP=28 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:33:35:1:0,35 0/1:12,16:28:99:.:337,0,321:8,4,11,5 +chrX 2297730 . A C 3103 . AC=3;AF=1.00;AN=3;AS_AltDP=103;AS_QD=30.42;DP=110;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.42;SOR=0.793;VarDP=103 GT:AD:DP:GQ:PL:SB 1:0,47:47:99:1422,0:0,0,28,19 1/1:0,56:56:99:1711,167,0:0,0,26,30 +chrX 2297762 . G GT,GTTTT 2017.97 . AC=1,2;AF=0.333,0.667;AN=3;AS_AltDP=39,42;AS_QD=31.90,29.08;DP=107;ExcessHet=0.0000;FS=0.000;MQ=59.88;QD=25.40;SOR=0.876;VarDP=81 GT:AD:DP:GQ:PL:SB 2:0,20,22:42:55:755,55,0:0,0,27,15 1/2:0,19,20:39:99:1302,829,758,488,0,703:0,0,17,22 +chrX 2298000 . C A 785 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=15.98;BaseQRankSum=-1.016;DP=127;ExcessHet=0.0000;FS=5.752;MQ=59.68;MQRankSum=0;QD=15.98;ReadPosRankSum=-0.335;SOR=0.250;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:74:99:74:0,249 0/1:21,30:51:99:.:815,0,557:14,7,15,15 +chrX 2298015 . C G 750 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=15.29;BaseQRankSum=-1.11;DP=126;ExcessHet=0.0000;FS=1.098;MQ=60.00;MQRankSum=0;QD=15.29;ReadPosRankSum=-0.316;SOR=0.465;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:74:99:74:0,249 0/1:21,30:51:99:.:780,0,544:12,9,15,15 +chrX 2298068 . A G 1011 . AC=2;AF=0.667;AN=3;AS_AltDP=71;AS_QD=7.71;BaseQRankSum=1.447;DP=137;ExcessHet=0.0000;FS=2.168;MQ=59.93;MQRankSum=0.197;QD=7.71;ReadPosRankSum=-0.911;SOR=0.789;VarDP=135 GT:AD:DP:GQ:PL:SB 1:35,45:80:99:393,0:15,20,22,23 0/1:29,26:55:99:648,0,757:16,13,16,10 +chrX 2298184 . T C 3842 . AC=3;AF=1.00;AN=3;AS_AltDP=121;AS_QD=32.00;DP=129;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.00;SOR=0.850;VarDP=121 GT:AD:DP:GQ:PL:SB 1:0,71:71:99:2266,0:0,0,26,45 1/1:0,50:50:99:1606,149,0:0,0,30,20 +chrX 2298317 . G GTTT 874.97 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=23.44;BaseQRankSum=-0.451;DP=98;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=23.44;ReadPosRankSum=-0.864;SOR=0.723;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:49:99:49:0,1002 0/1:13,26:39:99:.:914,0,413:5,8,10,16 +chrX 2298394 . T TA 1767.97 . AC=3;AF=1.00;AN=3;AS_AltDP=75;AS_QD=23.47;BaseQRankSum=-0.437;DP=91;ExcessHet=0.0000;FS=0.000;MQ=59.71;MQRankSum=-0.118;QD=23.47;ReadPosRankSum=-0.458;SOR=0.892;VarDP=77 GT:AD:DP:GQ:PL:SB 1:2,36:38:99:863,0:1,1,20,16 1/1:0,39:39:99:944,116,0:0,0,21,18 +chrX 2298456 . C T 3276 . AC=3;AF=1.00;AN=3;AS_AltDP=98;AS_QD=33.73;DP=101;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.73;SOR=1.426;VarDP=98 GT:AD:DP:GQ:PL:SB 1:0,55:55:99:1861,0:0,0,35,20 1/1:0,43:43:99:1445,129,0:0,0,28,15 +chrX 2298525 . A G 619 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=14.42;BaseQRankSum=-1.015;DP=104;ExcessHet=0.0000;FS=2.626;MQ=60.00;MQRankSum=0;QD=14.42;ReadPosRankSum=-0.797;SOR=1.129;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:58:99:58:0,203 0/1:21,24:45:99:.:649,0,575:13,8,17,7 +chrX 2298601 . TACACACACACAC T,CACACACACACAC 3524 . AC=1,2;AF=0.333,0.667;AN=3;AS_AltDP=50,67;AS_QD=27.95,37.91;DP=131;ExcessHet=0.0000;FS=0.000;MQ=59.75;QD=30.38;SOR=0.745;VarDP=117 GT:AD:DP:GQ:PL:SB 2:0,27,34:61:99:1358,141,0:0,0,28,33 1/2:0,23,33:56:99:2196,1237,1203,967,0,1024:0,0,29,27 +chrX 2298614 . A ACACACACACACG 1219.97 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=10.95;BaseQRankSum=0.86;DP=118;ExcessHet=0.0000;FS=0.695;MQ=59.72;MQRankSum=-0.875;QD=10.95;ReadPosRankSum=-1.108;SOR=0.590;VarDP=115 GT:AD:DP:GQ:PL:SB 1:28,34:62:99:238,0:11,17,18,16 0/1:25,28:53:99:1021,0,943:14,11,13,15 +chrX 2298731 . T A 837 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=12.21;BaseQRankSum=0.354;DP=133;ExcessHet=0.0000;FS=6.240;MQ=59.93;MQRankSum=0.96;QD=12.21;ReadPosRankSum=1.539;SOR=0.843;VarDP=71 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:61:99:61:.:.:0,318 0|1:38,33:71:99:.:0|1:2298731_T_A:867,0,1023:2298731:22,16,14,19 +chrX 2298756 . C T 4190 . AC=3;AF=1.00;AN=3;AS_AltDP=118;AS_QD=31.31;BaseQRankSum=2.648;DP=126;ExcessHet=0.0000;FS=0.000;MQ=59.67;MQRankSum=-0.283;QD=35.17;ReadPosRankSum=0.53;SOR=0.762;VarDP=120 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:2,54:56:99:.:.:1815,0:.:1,1,30,24 1|1:0,64:64:99:0|1:2298731_T_A:2405,192,0:2298731:0,0,31,33 +chrX 2298985 . CAAAAAAAAAA C 637.97 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=17.82;BaseQRankSum=0.2;DP=101;ExcessHet=0.0000;FS=0.000;MQ=58.50;MQRankSum=0.934;QD=17.82;ReadPosRankSum=1.843;SOR=0.527;VarDP=38 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:36:41:0,36 0/1:20,18:38:99:.:677,0,784:11,9,9,9 +chrX 2299014 . A T,AAT 2678 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=37,38;AS_QD=27.77,25.51;DP=104;ExcessHet=0.0000;FS=0.000;MQ=57.72;QD=36.11;SOR=0.832;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,19,18:37:53:933,0,53:0,0,20,17 1/2:0,18,20:38:99:1775,711,784,778,0,677:0,0,20,18 +chrX 2299199 . A C 3731 . AC=3;AF=1.00;AN=3;AS_AltDP=115;AS_QD=32.70;DP=120;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.70;SOR=0.782;VarDP=115 GT:AD:DP:GQ:PL:SB 1:0,50:50:99:1678,0:0,0,20,30 1/1:0,65:65:99:2083,194,0:0,0,35,30 +chrX 2299280 . T C 1142 . AC=1;AF=0.333;AN=3;AS_AltDP=41;AS_QD=20.21;BaseQRankSum=0.05;DP=119;ExcessHet=0.0000;FS=2.492;MQ=60.00;MQRankSum=0;QD=20.21;ReadPosRankSum=-1.846;SOR=1.008;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:58:15:58:0,15 0/1:17,41:58:99:.:1172,0,357:8,9,24,17 +chrX 2299349 . A G 3801 . AC=3;AF=1.00;AN=3;AS_AltDP=121;AS_QD=31.66;DP=129;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.66;SOR=0.928;VarDP=121 GT:AD:DP:GQ:PL:SB 1:0,63:63:99:1941,0:0,0,32,31 1/1:0,58:58:99:1890,174,0:0,0,22,36 +chrX 2299854 . CAA C,CAAA 1078.97 . AC=2,0;AF=0.667,0.00;AN=3;AS_AltDP=46,22;AS_QD=15.32,7.96;BaseQRankSum=1.454;DP=113;ExcessHet=0.0000;FS=4.295;MQ=59.85;MQRankSum=-1.148;QD=11.77;ReadPosRankSum=0.379;SOR=0.482;VarDP=95 GT:AD:DP:GQ:PL:SB 1:0,27,22:49:99:559,0,169:0,0,23,26 0/1:27,19,0:46:99:559,0,843,640,900,1540:11,16,12,7 +chrX 2299954 . G A 636 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=13.06;BaseQRankSum=0.014;DP=114;ExcessHet=0.0000;FS=7.859;MQ=60.00;MQRankSum=0;QD=13.06;ReadPosRankSum=-0.886;SOR=1.239;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,154 0/1:26,25:51:99:.:666,0,686:15,11,9,16 +chrX 2300226 . G A 814 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=12.41;BaseQRankSum=1.627;DP=133;ExcessHet=0.0000;FS=0.952;MQ=60.00;MQRankSum=0;QD=12.41;ReadPosRankSum=0.486;SOR=0.909;VarDP=68 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,154 0/1:37,31:68:99:.:844,0,962:22,15,20,11 +chrX 2302095 . T C 786 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=7.77;BaseQRankSum=1.785;DP=108;ExcessHet=0.0000;FS=3.592;MQ=60.00;MQRankSum=0;QD=7.77;ReadPosRankSum=0.51;SOR=0.713;VarDP=105 GT:AD:DP:GQ:PL:SB 1:23,30:53:99:208,0:11,12,11,19 0/1:30,22:52:99:608,0,845:18,12,13,9 +chrX 2302311 . T TA 826.97 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=7.94;BaseQRankSum=0.257;DP=115;ExcessHet=0.0000;FS=0.719;MQ=60.00;MQRankSum=0;QD=7.94;ReadPosRankSum=0.897;SOR=0.771;VarDP=109 GT:AD:DP:GQ:PL:SB 1:24,28:52:99:144,0:17,7,17,11 0/1:33,24:57:99:722,0,1057:17,16,15,9 +chrX 2302438 . T C 802 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=12.80;BaseQRankSum=-0.494;DP=121;ExcessHet=0.0000;FS=2.059;MQ=60.00;MQRankSum=0;QD=12.80;ReadPosRankSum=0.795;SOR=0.455;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:66:56:0,66 0/1:34,31:65:99:.:832,0,945:20,14,16,15 +chrX 2302612 . A AAAATAAAT 836.97 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=17.52;BaseQRankSum=-1.112;DP=125;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=17.52;ReadPosRankSum=-2.191;SOR=0.779;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:66:56:0,66 0/1:27,23:50:99:.:876,0,1050:10,17,8,15 +chrX 2303414 . A G 326 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=6.47;BaseQRankSum=0.404;DP=114;ExcessHet=0.0000;FS=1.142;MQ=60.00;MQRankSum=0;QD=6.47;ReadPosRankSum=1.01;SOR=0.478;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:66:56:0,66 0/1:39,16:55:99:.:356,0,1120:22,17,8,8 +chrX 2303524 . G T 545 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=5.09;BaseQRankSum=0.506;DP=124;ExcessHet=0.0000;FS=2.412;MQ=60.00;MQRankSum=0;QD=5.09;ReadPosRankSum=1.747;SOR=0.635;VarDP=113 GT:AD:DP:GQ:PL:SB 1:31,34:65:99:114,0:18,13,19,15 0/1:30,18:48:99:461,0,879:10,20,8,10 +chrX 2303619 . A G 801 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=7.84;BaseQRankSum=0.901;DP=121;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=7.84;ReadPosRankSum=0.258;SOR=0.693;VarDP=106 GT:AD:DP:GQ:PL:SB 1:27,31:58:99:161,0:16,11,14,17 0/1:24,24:48:99:670,0,660:10,14,13,11 +chrX 2303785 . A ATGGATGGG 187.97 . AC=1;AF=0.333;AN=3;AS_AltDP=9;AS_QD=9.46;BaseQRankSum=1.915;DP=100;ExcessHet=0.0000;FS=0.000;MQ=55.73;MQRankSum=-0.934;QD=9.46;ReadPosRankSum=-2.489;SOR=0.917;VarDP=24 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,630 0/1:15,9:24:99:.:227,0,414:9,6,6,3 +chrX 2303789 . ATGGG A 1123.97 . AC=2;AF=0.667;AN=3;AS_AltDP=32;AS_QD=27.05;BaseQRankSum=-1.281;DP=72;ExcessHet=0.0000;FS=7.562;MQ=54.26;MQRankSum=0.129;QD=27.05;ReadPosRankSum=2.737;SOR=0.381;VarDP=43 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,18:18:99:.:.:729,0:.:0,0,8,10 0|1:11,14:25:99:0|1:2303789_ATGGG_A:434,0,270:2303789:8,3,7,7 +chrX 2303801 . G A 1108 . AC=2;AF=0.667;AN=3;AS_AltDP=33;AS_QD=25.86;BaseQRankSum=-0.56;DP=69;ExcessHet=0.0000;FS=13.519;MQ=53.08;MQRankSum=0.304;QD=25.86;ReadPosRankSum=1.643;SOR=0.406;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,18:19:99:.:.:694,0:.:1,0,8,10 0|1:10,15:25:99:0|1:2303789_ATGGG_A:444,0,236:2303789:8,2,7,8 +chrX 2303845 . ATGGATGGG A 828.97 . AC=2;AF=0.667;AN=3;AS_AltDP=39;AS_QD=18.08;BaseQRankSum=1.598;DP=84;ExcessHet=0.0000;FS=8.646;MQ=54.36;MQRankSum=2.08;QD=18.08;ReadPosRankSum=1.568;SOR=1.203;VarDP=48 GT:AD:DP:GQ:PL:SB 1:6,23:29:99:520,0:4,2,9,14 0/1:3,16:19:81:348,0,81:2,1,5,11 +chrX 2304095 . T G 46 . AC=1;AF=0.333;AN=3;AS_AltDP=4;AS_QD=4.47;BaseQRankSum=-0.781;DP=57;ExcessHet=0.0000;FS=6.021;MQ=57.75;MQRankSum=0.819;QD=4.47;ReadPosRankSum=-0.135;SOR=2.584;VarDP=17 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:35:99:35:.:.:0,302 0|1:13,4:17:76:.:0|1:2304095_T_G:76,0,459:2304095:7,6,3,0 +chrX 2304112 . GATGGATGGATAA G 332.97 . AC=1;AF=0.333;AN=3;AS_AltDP=10;AS_QD=17.71;BaseQRankSum=0.073;DP=62;ExcessHet=0.0000;FS=0.000;MQ=56.60;MQRankSum=-0.801;QD=17.71;ReadPosRankSum=2.083;SOR=0.551;VarDP=21 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:35:99:35:.:.:0,302 0|1:11,10:21:99:.:0|1:2304112_GATGGATGGATAA_G:372,0,341:2304112:5,6,5,5 +chrX 2304140 . A G 46 . AC=1;AF=0.333;AN=3;AS_AltDP=6;AS_QD=3.17;BaseQRankSum=-1.445;DP=53;ExcessHet=0.0000;FS=12.161;MQ=55.59;MQRankSum=0.083;QD=3.17;ReadPosRankSum=0.946;SOR=2.229;VarDP=24 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:99:28:0,405 0/1:18,6:24:76:.:76,0,683:12,6,1,5 +chrX 2304171 . T G 602 . AC=2;AF=0.667;AN=3;AS_AltDP=28;AS_QD=12.64;BaseQRankSum=-1.167;DP=51;ExcessHet=0.0000;FS=1.166;MQ=55.61;MQRankSum=-0.378;QD=12.64;ReadPosRankSum=0.062;SOR=0.518;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:10,17:27:99:.:.:260,0:.:8,2,11,6 0|1:12,11:23:99:0|1:2304112_GATGGATGGATAA_G:372,0,357:2304112:8,4,8,3 +chrX 2304204 . AATGG A 873.97 . AC=3;AF=1.00;AN=3;AS_AltDP=21;AS_QD=23.32;DP=30;ExcessHet=0.0000;FS=0.000;MQ=57.43;QD=43.48;SOR=2.636;VarDP=21 GT:AD:DP:GQ:PL:SB 1:0,8:8:99:352,0:0,0,7,1 1/1:0,13:13:39:561,39,0:0,0,10,3 +chrX 2304293 . G A 513 . AC=2;AF=0.667;AN=3;AS_AltDP=31;AS_QD=10.65;BaseQRankSum=-0.61;DP=67;ExcessHet=0.0000;FS=15.894;MQ=52.89;MQRankSum=-0.367;QD=10.65;ReadPosRankSum=0.656;SOR=0.045;VarDP=51 GT:AD:DP:GQ:PL:SB 1:9,15:24:99:149,0:8,1,8,7 0/1:11,16:27:99:394,0,275:10,1,10,6 +chrX 2304339 . T TGATGGATG 818.97 . AC=2;AF=0.667;AN=3;AS_AltDP=34;AS_QD=13.62;BaseQRankSum=0.482;DP=75;ExcessHet=0.0000;FS=0.952;MQ=57.35;MQRankSum=-0.542;QD=13.62;ReadPosRankSum=-0.551;SOR=0.846;VarDP=63 GT:AD:DP:GQ:PL:SB 1:12,18:30:99:280,0:8,4,9,9 0/1:17,16:33:99:578,0,636:8,9,11,5 +chrX 2304979 . G A 574 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=12.08;BaseQRankSum=-1.714;DP=84;ExcessHet=0.0000;FS=2.447;MQ=60.00;MQRankSum=0;QD=12.08;ReadPosRankSum=0.049;SOR=0.350;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:60:32:0,60 0/1:26,24:50:99:.:604,0,707:16,10,12,12 +chrX 2305418 . G A 577 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=12.39;BaseQRankSum=1.188;DP=83;ExcessHet=0.0000;FS=0.000;MQ=59.58;MQRankSum=1.319;QD=12.39;ReadPosRankSum=-1.397;SOR=0.681;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:60:32:0,60 0/1:27,22:49:99:.:607,0,751:16,11,13,9 +chrX 2305801 . G A 404 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=12.76;BaseQRankSum=-0.596;DP=68;ExcessHet=0.0000;FS=0.000;MQ=59.57;MQRankSum=0;QD=12.76;ReadPosRankSum=-1.571;SOR=0.807;VarDP=34 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:60:32:0,60 0/1:18,16:34:99:.:434,0,499:13,5,12,4 +chrX 2306019 . CT C 3815.97 . AC=3;AF=1.00;AN=3;AS_AltDP=109;AS_QD=29.51;DP=114;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=35.37;SOR=0.749;VarDP=109 GT:AD:DP:GQ:PL:SB 1:0,58:58:99:2055,0:0,0,31,27 1/1:0,51:51:99:1800,153,0:0,0,25,26 +chrX 2306294 . C T 712 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=5.98;BaseQRankSum=1.138;DP=126;ExcessHet=0.0000;FS=0.659;MQ=60.00;MQRankSum=0;QD=5.98;ReadPosRankSum=0.041;SOR=0.762;VarDP=124 GT:AD:DP:GQ:PL:SB 1:34,34:68:35:35,0:19,15,17,17 0/1:29,27:56:99:707,0,706:14,15,16,11 +chrX 2306406 . C G 617 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=15.78;BaseQRankSum=-0.689;DP=97;ExcessHet=0.0000;FS=2.883;MQ=60.00;MQRankSum=0;QD=15.78;ReadPosRankSum=1.183;SOR=1.392;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:55:99:55:0,134 0/1:18,23:41:99:.:647,0,478:8,10,7,16 +chrX 2306463 . C CT 418.97 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=11.74;BaseQRankSum=-0.473;DP=106;ExcessHet=0.0000;FS=5.035;MQ=59.67;MQRankSum=-0.695;QD=11.74;ReadPosRankSum=-0.234;SOR=1.251;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:55:99:55:0,134 0/1:14,25:39:99:.:458,0,222:6,8,16,9 +chrX 2306515 . G A 806 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=15.48;BaseQRankSum=0.711;DP=112;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=15.48;ReadPosRankSum=0.184;SOR=0.759;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:55:99:55:0,134 0/1:23,31:54:99:.:836,0,493:10,13,13,18 +chrX 2306596 . A G 1066 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=16.61;BaseQRankSum=0.804;DP=121;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=16.61;ReadPosRankSum=-0.198;SOR=0.683;VarDP=66 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:55:99:55:.:.:0,134 0|1:37,29:66:99:.:0|1:2306596_A_G:1096,0,1422:2306596:14,23,11,18 +chrX 2306598 . G A 1066 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=16.61;BaseQRankSum=0.586;DP=123;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=16.61;ReadPosRankSum=-0.391;SOR=0.683;VarDP=66 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:55:99:55:.:.:0,134 0|1:37,29:66:99:.:0|1:2306596_A_G:1096,0,1422:2306596:14,23,11,18 +chrX 2306631 . G T 751 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=13.70;BaseQRankSum=0.826;DP=114;ExcessHet=0.0000;FS=2.277;MQ=60.00;MQRankSum=0;QD=13.70;ReadPosRankSum=-1.661;SOR=0.417;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:55:99:55:0,134 0/1:29,28:57:99:.:781,0,794:10,19,12,16 +chrX 2306699 . G A 1062 . AC=2;AF=0.667;AN=3;AS_AltDP=69;AS_QD=8.53;BaseQRankSum=0.734;DP=131;ExcessHet=0.0000;FS=1.388;MQ=60.00;MQRankSum=0;QD=8.53;ReadPosRankSum=1.518;SOR=0.631;VarDP=128 GT:AD:DP:GQ:PL:SB 1:31,39:70:99:288,0:17,14,21,18 0/1:28,30:58:99:804,0,744:11,17,14,16 +chrX 2306745 . T A 1077 . AC=2;AF=0.667;AN=3;AS_AltDP=73;AS_QD=8.58;BaseQRankSum=0.079;DP=136;ExcessHet=0.0000;FS=1.415;MQ=60.00;MQRankSum=0;QD=8.58;ReadPosRankSum=1.607;SOR=0.846;VarDP=129 GT:AD:DP:GQ:PL:SB 1:33,42:75:99:293,0:20,13,24,18 0/1:23,31:54:99:814,0,598:11,12,19,12 +chrX 2306926 . CTT C 634.97 . AC=2;AF=0.667;AN=3;AS_AltDP=38;AS_QD=8.12;BaseQRankSum=-0.556;DP=103;ExcessHet=0.0000;FS=1.800;MQ=60.00;MQRankSum=0;QD=8.12;ReadPosRankSum=1.252;SOR=0.881;VarDP=83 GT:AD:DP:GQ:PL:SB 1:17,21:38:99:209,0:4,13,13,8 0/1:28,17:45:99:465,0,850:18,10,8,9 +chrX 2306988 . C T 722 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=15.04;BaseQRankSum=1.436;DP=99;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=15.04;ReadPosRankSum=0.707;SOR=0.764;VarDP=50 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:55:59:48:.:.:0,59 0|1:29,21:50:99:.:0|1:2306988_C_T:752,0,1057:2306988:13,16,9,12 +chrX 2307011 . C T 731 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=14.63;BaseQRankSum=-0.241;DP=102;ExcessHet=0.0000;FS=1.102;MQ=60.00;MQRankSum=0;QD=14.63;ReadPosRankSum=0.297;SOR=0.986;VarDP=52 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:55:59:48:.:.:0,59 0|1:30,22:52:99:.:0|1:2306988_C_T:761,0,1110:2306988:13,17,8,14 +chrX 2307100 . C G 636 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=6.22;BaseQRankSum=0.144;DP=111;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=6.22;ReadPosRankSum=0.147;SOR=0.768;VarDP=107 GT:AD:DP:GQ:PL:SB 1:26,29:55:88:88,0:8,18,9,20 0/1:29,23:52:99:578,0,822:12,17,9,14 +chrX 2307147 . T G 906 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=9.09;BaseQRankSum=-1.626;DP=107;ExcessHet=0.0000;FS=9.467;MQ=60.00;MQRankSum=0;QD=9.09;ReadPosRankSum=-0.034;SOR=0.713;VarDP=103 GT:AD:DP:GQ:PL:SB 1:21,24:45:29:29,0:10,11,13,11 0/1:25,33:58:99:907,0,705:8,17,19,14 +chrX 2307540 . G C 938 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=9.40;BaseQRankSum=-1.171;DP=107;ExcessHet=0.0000;FS=1.607;MQ=59.54;MQRankSum=0;QD=9.40;ReadPosRankSum=0.011;SOR=0.715;VarDP=103 GT:AD:DP:GQ:PL:SB 1:24,32:56:99:181,0:14,10,18,14 0/1:18,29:47:99:787,0,475:8,10,11,18 +chrX 2307764 . CA C 1374.97 . AC=3;AF=1.00;AN=3;AS_AltDP=57;AS_QD=23.18;BaseQRankSum=1.162;DP=103;ExcessHet=0.0000;FS=9.294;MQ=59.35;MQRankSum=0;QD=23.18;ReadPosRankSum=0.642;SOR=0.042;VarDP=61 GT:AD:DP:GQ:PL:SB 1:1,26:27:99:654,0:0,1,11,15 1/1:3,31:34:54:760,54,0:0,3,17,14 +chrX 2307798 . T A 711 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=14.25;BaseQRankSum=1.843;DP=111;ExcessHet=0.0000;FS=2.356;MQ=59.34;MQRankSum=0.298;QD=14.25;ReadPosRankSum=0.991;SOR=1.085;VarDP=52 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:55:99:55:.:.:0,139 0|1:30,22:52:99:.:0|1:2307798_T_A:741,0,1102:2307798:15,15,13,9 +chrX 2307803 . T A 705 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=13.61;BaseQRankSum=1.906;DP=116;ExcessHet=0.0000;FS=1.064;MQ=59.40;MQRankSum=0.244;QD=13.61;ReadPosRankSum=0.498;SOR=0.936;VarDP=54 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:55:99:55:.:.:0,139 0|1:32,22:54:99:.:0|1:2307798_T_A:735,0,1165:2307798:17,15,13,9 +chrX 2307929 . A G 872 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=14.32;BaseQRankSum=-1.22;DP=119;ExcessHet=0.0000;FS=4.972;MQ=60.00;MQRankSum=0;QD=14.32;ReadPosRankSum=1.593;SOR=1.208;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:55:99:55:0,139 0/1:29,34:63:99:.:902,0,779:14,15,21,13 +chrX 2308007 . C T 698 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=14.56;BaseQRankSum=-0.407;DP=105;ExcessHet=0.0000;FS=1.117;MQ=60.00;MQRankSum=0;QD=14.56;ReadPosRankSum=-1.84;SOR=0.492;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:55:99:55:0,139 0/1:23,27:50:99:.:728,0,609:8,15,11,16 +chrX 2308136 . A G 3780 . AC=3;AF=1.00;AN=3;AS_AltDP=118;AS_QD=32.02;BaseQRankSum=2.341;DP=125;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=32.02;ReadPosRankSum=0.315;SOR=0.356;VarDP=119 GT:AD:DP:GQ:PL:SB 1:0,53:53:99:1717,0:0,0,30,23 1/1:1,65:66:99:2093,188,0:1,0,37,28 +chrX 2308302 . G C 678 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=13.36;BaseQRankSum=-0.834;DP=112;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.36;ReadPosRankSum=-1.255;SOR=0.622;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:58:99:58:0,403 0/1:26,27:53:99:.:708,0,690:12,14,13,14 +chrX 2308421 . C G 1302 . AC=2;AF=0.667;AN=3;AS_AltDP=69;AS_QD=12.11;BaseQRankSum=-0.686;DP=113;ExcessHet=0.0000;FS=7.663;MQ=60.00;MQRankSum=0;QD=12.11;ReadPosRankSum=1.558;SOR=0.914;VarDP=110 GT:AD:DP:GQ:PL:SB 1:23,42:65:99:589,0:11,12,26,16 0/1:18,27:45:99:743,0,470:7,11,14,13 +chrX 2308505 . G C 3458 . AC=3;AF=1.00;AN=3;AS_AltDP=110;AS_QD=31.71;DP=116;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.71;SOR=0.931;VarDP=110 GT:AD:DP:GQ:PL:SB 1:0,68:68:99:2138,0:0,0,37,31 1/1:0,42:42:99:1350,126,0:0,0,24,18 +chrX 2308899 . A AGGAAG 997.97 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=22.54;BaseQRankSum=0.974;DP=108;ExcessHet=0.0000;FS=2.581;MQ=60.00;MQRankSum=0;QD=22.54;ReadPosRankSum=-0.458;SOR=1.167;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,397 0/1:19,27:46:99:.:1037,0,690:10,9,17,10 +chrX 2308964 . C A 1067 . AC=1;AF=0.333;AN=3;AS_AltDP=39;AS_QD=18.59;BaseQRankSum=1.636;DP=119;ExcessHet=0.0000;FS=3.854;MQ=60.00;MQRankSum=0;QD=18.59;ReadPosRankSum=0.16;SOR=0.599;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,397 0/1:20,39:59:99:.:1097,0,448:12,8,18,21 +chrX 2309002 . T G 3860 . AC=3;AF=1.00;AN=3;AS_AltDP=124;AS_QD=31.37;DP=127;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.37;SOR=0.759;VarDP=124 GT:AD:DP:GQ:PL:SB 1:0,62:62:99:1906,0:0,0,33,29 1/1:0,62:62:99:1984,186,0:0,0,31,31 +chrX 2310092 . T C 3673 . AC=3;AF=1.00;AN=3;AS_AltDP=111;AS_QD=33.36;DP=113;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.36;SOR=0.907;VarDP=111 GT:AD:DP:GQ:PL:SB 1:0,54:54:99:1844,0:0,0,31,23 1/1:0,57:57:99:1859,171,0:0,0,30,27 +chrX 2310528 . C CTG 991.97 . AC=2;AF=0.667;AN=3;AS_AltDP=50;AS_QD=11.58;BaseQRankSum=2.001;DP=107;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=11.58;ReadPosRankSum=0.119;SOR=0.701;VarDP=89 GT:AD:DP:GQ:PL:SB 1:18,26:44:99:291,0:7,11,13,13 0/1:21,24:45:99:740,0,670:11,10,10,14 +chrX 2310858 . C T 682 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=15.82;BaseQRankSum=0.014;DP=102;ExcessHet=0.0000;FS=6.369;MQ=60.00;MQRankSum=0;QD=15.82;ReadPosRankSum=-1.124;SOR=0.897;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:55:99:55:0,273 0/1:18,27:45:99:.:712,0,430:11,7,11,16 +chrX 2311061 . CAA C,CA 1532.97 . AC=1,2;AF=0.333,0.667;AN=3;AS_AltDP=28,38;AS_QD=32.00,32.71;DP=90;ExcessHet=0.0000;FS=0.000;MQ=59.68;QD=23.82;SOR=0.754;VarDP=66 GT:AD:DP:GQ:PL:SB 2:0,11,22:33:99:677,307,0:0,0,17,16 1/2:0,17,16:33:99:895,369,429,418,0,329:0,0,15,18 +chrX 2311750 . G A 783 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=16.26;BaseQRankSum=2.39;DP=114;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=16.26;ReadPosRankSum=-0.313;SOR=0.836;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:5:62:0,5 0/1:22,28:50:99:.:813,0,554:11,11,13,15 +chrX 2311903 . A G 3680 . AC=3;AF=1.00;AN=3;AS_AltDP=114;AS_QD=32.54;DP=117;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.54;SOR=0.841;VarDP=114 GT:AD:DP:GQ:PL:SB 1:0,61:61:99:2010,0:0,0,27,34 1/1:0,53:53:99:1700,158,0:0,0,26,27 +chrX 2312128 . T G 3602 . AC=3;AF=1.00;AN=3;AS_AltDP=113;AS_QD=32.14;DP=114;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.14;SOR=0.747;VarDP=113 GT:AD:DP:GQ:PL:SB 1:0,60:60:99:1936,0:0,0,26,34 1/1:0,53:53:99:1696,159,0:0,0,29,24 +chrX 2312860 . C A 917 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=8.09;BaseQRankSum=0.326;DP=123;ExcessHet=0.0000;FS=2.363;MQ=60.00;MQRankSum=0;QD=8.09;ReadPosRankSum=0.361;SOR=0.739;VarDP=117 GT:AD:DP:GQ:PL:SB 1:27,29:56:46:46,0:13,14,16,13 0/1:28,33:61:99:901,0,749:13,15,17,16 +chrX 2313006 . A AT 436.97 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=10.82;BaseQRankSum=-1.156;DP=113;ExcessHet=0.0000;FS=4.185;MQ=59.47;MQRankSum=-0.867;QD=10.82;ReadPosRankSum=-0.589;SOR=0.610;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:55:99:55:0,120 0/1:20,24:44:99:.:476,0,392:12,8,11,13 +chrX 2313285 . G C 586 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=12.57;BaseQRankSum=-1.461;DP=108;ExcessHet=0.0000;FS=1.101;MQ=59.78;MQRankSum=1.021;QD=12.57;ReadPosRankSum=-0.66;SOR=0.957;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:55:99:55:0,120 0/1:25,24:49:99:.:616,0,691:12,13,10,14 +chrX 2313515 . A C 2835 . AC=3;AF=1.00;AN=3;AS_AltDP=90;AS_QD=31.83;DP=97;ExcessHet=0.0000;FS=0.000;MQ=59.59;QD=31.83;SOR=1.105;VarDP=90 GT:AD:DP:GQ:PL:SB 1:0,52:52:99:1640,0:0,0,31,21 1/1:0,38:38:99:1225,114,0:0,0,22,16 +chrX 2313619 . G A 845 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=7.74;BaseQRankSum=0.142;DP=115;ExcessHet=0.0000;FS=4.613;MQ=59.58;MQRankSum=-0.052;QD=7.74;ReadPosRankSum=1.187;SOR=0.566;VarDP=113 GT:AD:DP:GQ:PL:SB 1:31,41:72:99:343,0:14,17,21,20 0/1:21,20:41:99:532,0,571:8,13,11,9 +chrX 2313656 . G C 500 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=13.25;BaseQRankSum=0.348;DP=107;ExcessHet=0.0000;FS=1.236;MQ=60.00;MQRankSum=0;QD=13.25;ReadPosRankSum=-1.434;SOR=0.758;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:99:66:0,298 0/1:20,20:40:99:.:530,0,535:11,9,9,11 +chrX 2313706 . A G 704 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=5.97;BaseQRankSum=1.437;DP=125;ExcessHet=0.0000;FS=1.429;MQ=60.00;MQRankSum=0;QD=5.97;ReadPosRankSum=0.564;SOR=0.551;VarDP=123 GT:AD:DP:GQ:PL:SB 1:34,35:69:59:59,0:14,20,19,16 0/1:29,25:54:99:675,0,796:15,14,11,14 +chrX 2313765 . C T 915 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=17.18;BaseQRankSum=-1.054;DP=126;ExcessHet=0.0000;FS=3.850;MQ=59.65;MQRankSum=0;QD=17.18;ReadPosRankSum=-0.581;SOR=0.767;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,204 0/1:21,34:55:99:.:945,0,545:9,12,19,15 +chrX 2313953 . C T 4097 . AC=3;AF=1.00;AN=3;AS_AltDP=129;AS_QD=31.75;BaseQRankSum=2.303;DP=139;ExcessHet=0.0000;FS=0.000;MQ=59.96;MQRankSum=0;QD=31.75;ReadPosRankSum=-1.362;SOR=0.285;VarDP=130 GT:AD:DP:GQ:PL:SB 1:0,74:74:99:2356,0:0,0,34,40 1/1:1,55:56:99:1771,158,0:0,1,26,29 +chrX 2314124 . C T 2278 . AC=3;AF=1.00;AN=3;AS_AltDP=71;AS_QD=32.51;DP=109;ExcessHet=0.0000;FS=0.000;MQ=59.79;QD=32.51;SOR=1.451;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,35:35:99:1157,0:0,0,10,25 1/1:0,36:36:99:1151,107,0:0,0,15,21 +chrX 2314205 . AGAGGGAGGGAAGGAGGGAAGGAAGG A 212.97 . AC=1;AF=0.333;AN=3;AS_AltDP=7;AS_QD=12.00;BaseQRankSum=0.825;DP=70;ExcessHet=0.0000;FS=4.506;MQ=59.00;MQRankSum=0;QD=12.00;ReadPosRankSum=-0.772;SOR=0.160;VarDP=21 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:35:99:35:0,450 0/1:14,7:21:99:.:252,0,473:3,11,3,4 +chrX 2314206 . GAGGGAGGGAAGGAGGGAAGGAAGGGAGGGAGGGAAGGA G,* 725.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=13,7;AS_QD=28.17,0.00;DP=76;ExcessHet=0.0000;FS=0.000;MQ=57.99;MQRankSum=0;QD=30.60;SOR=1.426;VarDP=25 GT:AD:DP:GQ:PL:SB 1:2,2,0:4:61:61,0,175:0,0,0,2 1/2:3,11,7:21:99:704,258,327,419,0,435:1,2,5,13 +chrX 2314746 . G C 651 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=12.61;BaseQRankSum=-1.618;DP=121;ExcessHet=0.0000;FS=5.636;MQ=60.00;MQRankSum=0;QD=12.61;ReadPosRankSum=-0.364;SOR=0.511;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:94:65:0,94 0/1:28,26:54:99:.:681,0,791:10,18,14,12 +chrX 2314991 . T C 916 . AC=2;AF=0.667;AN=3;AS_AltDP=68;AS_QD=6.81;BaseQRankSum=2.353;DP=145;ExcessHet=0.0000;FS=1.346;MQ=59.97;MQRankSum=0;QD=6.81;ReadPosRankSum=-1.116;SOR=0.571;VarDP=139 GT:AD:DP:GQ:PL:SB 1:34,33:67:55:55,0:19,15,20,13 0/1:37,35:72:99:891,0,970:23,14,18,17 +chrX 2315161 . TA T 365.97 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=10.38;BaseQRankSum=0.845;DP=112;ExcessHet=0.0000;FS=0.000;MQ=59.82;MQRankSum=1.077;QD=10.38;ReadPosRankSum=-2.432;SOR=0.551;VarDP=39 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:64:99:64:.:.:0,381 0|1:19,20:39:99:.:0|1:2315161_TA_T:405,0,376:2315161:5,14,6,14 +chrX 2315176 . C G 4284 . AC=3;AF=1.00;AN=3;AS_AltDP=111;AS_QD=28.40;DP=116;ExcessHet=0.0000;FS=0.000;MQ=59.93;QD=38.86;SOR=1.089;VarDP=111 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,64:64:99:.:.:2465,0:.:0,0,31,33 1|1:0,47:47:99:0|1:2315161_TA_T:1849,141,0:2315161:0,0,15,32 +chrX 2315189 . G C 696 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=14.82;BaseQRankSum=0.97;DP=137;ExcessHet=0.0000;FS=1.167;MQ=59.83;MQRankSum=0.146;QD=14.82;ReadPosRankSum=-0.14;SOR=0.425;VarDP=49 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:85:99:85:.:.:0,174 0|1:23,26:49:99:.:0|1:2315161_TA_T:726,0,602:2315161:7,16,10,16 +chrX 2315301 . A G 950 . AC=2;AF=0.667;AN=3;AS_AltDP=73;AS_QD=6.85;BaseQRankSum=0.694;DP=144;ExcessHet=0.0000;FS=7.439;MQ=60.00;MQRankSum=0;QD=6.85;ReadPosRankSum=1.397;SOR=1.257;VarDP=143 GT:AD:DP:GQ:PL:SB 1:38,41:79:99:100,0:21,17,26,15 0/1:32,32:64:99:880,0,860:14,18,19,13 +chrX 2315354 . G C 681 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=11.66;BaseQRankSum=2.481;DP=139;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=11.66;ReadPosRankSum=1.97;SOR=0.674;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:78:80:78:0,80 0/1:35,26:61:99:.:711,0,918:19,16,14,12 +chrX 2315562 . G C 4011 . AC=3;AF=1.00;AN=3;AS_AltDP=122;AS_QD=33.12;DP=125;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.12;SOR=1.071;VarDP=122 GT:AD:DP:GQ:PL:SB 1:0,58:58:99:1886,0:0,0,24,34 1/1:0,64:64:99:2155,192,0:0,0,27,37 +chrX 2315652 . T C 3655 . AC=3;AF=1.00;AN=3;AS_AltDP=111;AS_QD=33.20;DP=115;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.20;SOR=1.138;VarDP=111 GT:AD:DP:GQ:PL:SB 1:0,53:53:99:1756,0:0,0,20,33 1/1:0,58:58:99:1929,174,0:0,0,25,33 +chrX 2316339 . C G 661 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=15.02;BaseQRankSum=-1.186;DP=113;ExcessHet=0.0000;FS=0.000;MQ=59.88;MQRankSum=1.135;QD=15.02;ReadPosRankSum=-1.722;SOR=0.786;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,283 0/1:21,25:46:99:.:691,0,582:8,13,9,16 +chrX 2316387 . A G 572 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=13.68;BaseQRankSum=-1.747;DP=114;ExcessHet=0.0000;FS=6.439;MQ=60.00;MQRankSum=0;QD=13.68;ReadPosRankSum=1.855;SOR=1.190;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,283 0/1:22,22:44:99:.:602,0,633:9,13,14,8 +chrX 2317256 . C CTTTT,CTTTTTTTTTTT,CTTT 2394.97 . AC=1,1,1;AF=0.333,0.333,0.333;AN=3;AS_AltDP=16,19,18;AS_QD=28.36,27.78,29.35;DP=93;ExcessHet=0.0000;FS=0.000;MQ=57.87;QD=45.92;SOR=1.654;VarDP=53 GT:AD:DP:GQ:PL:SB 1:0,16,10,0:26:99:1333,0,243,1006:0,0,12,14 2/3:0,0,9,18:27:99:1101,1095,1103,730,745,730,351,350,0,291:0,0,5,22 +chrX 2317286 . G C 291 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=7.83;BaseQRankSum=1.945;DP=84;ExcessHet=0.0000;FS=0.000;MQ=57.64;MQRankSum=-1.846;QD=7.83;ReadPosRankSum=0.126;SOR=0.551;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:42:99:42:0,218 0/1:28,13:41:99:.:321,0,672:8,20,4,9 +chrX 2317331 . A C 3979 . AC=3;AF=1.00;AN=3;AS_AltDP=91;AS_QD=24.51;DP=92;ExcessHet=0.0000;FS=0.000;MQ=59.07;QD=44.05;SOR=1.255;VarDP=91 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,49:49:99:.:.:2153,0:.:0,0,22,27 1|1:0,42:42:99:0|1:2317331_A_C:1856,126,0:2317331:0,0,13,29 +chrX 2317332 . G A 296 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=8.36;BaseQRankSum=0.706;DP=90;ExcessHet=0.0000;FS=1.408;MQ=58.40;MQRankSum=-1.697;QD=8.36;ReadPosRankSum=-1.26;SOR=0.400;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:47:99:47:0,234 0/1:25,14:39:99:.:326,0,643:7,18,5,9 +chrX 2317338 . A G 3935 . AC=3;AF=1.00;AN=3;AS_AltDP=90;AS_QD=31.67;DP=91;ExcessHet=0.0000;FS=0.000;MQ=59.06;QD=44.06;SOR=1.230;VarDP=90 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,48:48:99:.:.:2118,0:.:0,0,22,26 1|1:0,42:42:99:0|1:2317331_A_C:1847,126,0:2317331:0,0,13,29 +chrX 2317509 . C A 1156 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=10.50;BaseQRankSum=-0.733;DP=119;ExcessHet=0.0000;FS=1.524;MQ=59.27;MQRankSum=1.976;QD=10.50;ReadPosRankSum=1.525;SOR=0.521;VarDP=113 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:26,32:58:99:.:.:244,0:.:13,13,17,15 0|1:29,26:55:99:0|1:2317509_C_A:942,0,1068:2317509:20,9,15,11 +chrX 2317532 . G A 1363 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=12.44;BaseQRankSum=0.216;DP=115;ExcessHet=0.0000;FS=9.090;MQ=59.39;MQRankSum=2.299;QD=12.44;ReadPosRankSum=0.009;SOR=0.253;VarDP=112 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:21,35:56:99:.:.:512,0:.:12,9,17,18 0|1:32,24:56:99:0|1:2317509_C_A:881,0,1159:2317509:24,8,14,10 +chrX 2317636 . AAAG A 959.97 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=18.85;BaseQRankSum=1.428;DP=114;ExcessHet=0.0000;FS=1.054;MQ=60.00;MQRankSum=0;QD=18.85;ReadPosRankSum=1.379;SOR=0.936;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,154 0/1:27,26:53:99:.:999,0,1026:14,13,15,11 +chrX 2318003 . G A 877 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=16.49;BaseQRankSum=-1.471;DP=118;ExcessHet=0.0000;FS=2.310;MQ=60.00;MQRankSum=0;QD=16.49;ReadPosRankSum=-0.524;SOR=0.754;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,154 0/1:22,33:55:99:.:907,0,590:12,10,15,18 +chrX 2318192 . GAA G,GAAA 872.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=32,23;AS_QD=21.09,11.04;DP=84;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=16.58;SOR=0.884;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,14,11:25:77:171,0,77:0,0,13,12 1/2:0,18,12:30:99:741,237,406,581,0,663:0,0,17,13 +chrX 2318542 . C A 1084 . AC=2;AF=0.667;AN=3;AS_AltDP=68;AS_QD=8.57;BaseQRankSum=1.223;DP=133;ExcessHet=0.0000;FS=0.659;MQ=60.00;MQRankSum=0;QD=8.57;ReadPosRankSum=0.823;SOR=0.606;VarDP=130 GT:AD:DP:GQ:PL:SB 1:29,32:61:99:149,0:11,18,15,17 0/1:33,36:69:99:965,0,846:14,19,14,22 +chrX 2319542 . C A,CA 1309 . AC=0,3;AF=0.00,1.00;AN=3;AS_AltDP=8,52;AS_QD=15.00,25.75;DP=97;ExcessHet=0.0000;FS=0.000;MQ=58.93;QD=22.32;SOR=0.760;VarDP=60 GT:AD:DP:GQ:PL:SB 2:0,8,22:30:99:728,608,0:0,0,13,17 2/2:0,0,30:30:88:611,611,611,88,88,0:0,0,18,12 +chrX 2320411 . A C 2683 . AC=3;AF=1.00;AN=3;AS_AltDP=84;AS_QD=32.30;DP=118;ExcessHet=0.0000;FS=0.000;MQ=59.30;QD=32.30;SOR=2.476;VarDP=84 GT:AD:DP:GQ:PL:SB 1:0,42:42:99:1399,0:0,0,9,33 1/1:0,42:42:99:1314,126,0:0,0,10,32 +chrX 2320516 . C A 1604 . AC=3;AF=1.00;AN=3;AS_AltDP=38;AS_QD=30.08;BaseQRankSum=-0.288;DP=77;ExcessHet=0.0000;FS=8.921;MQ=56.45;MQRankSum=0;QD=41.90;ReadPosRankSum=1.553;SOR=3.897;VarDP=39 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,20:20:99:.:.:869,0:.:0,0,3,17 1|1:1,18:19:12:0|1:2320516_C_A:765,12,0:2320516:1,0,1,17 +chrX 2320522 . C T 1580 . AC=3;AF=1.00;AN=3;AS_AltDP=37;AS_QD=30.33;BaseQRankSum=-0.289;DP=76;ExcessHet=0.0000;FS=9.777;MQ=56.40;MQRankSum=0;QD=42.37;ReadPosRankSum=1.096;SOR=4.341;VarDP=38 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,19:19:99:.:.:845,0:.:0,0,2,17 1|1:1,18:19:12:0|1:2320516_C_A:765,12,0:2320516:1,0,1,17 +chrX 2320531 . A G 1350 . AC=2;AF=0.667;AN=3;AS_AltDP=35;AS_QD=33.66;BaseQRankSum=0;DP=81;ExcessHet=0.0000;FS=23.442;MQ=56.45;MQRankSum=-0.28;QD=33.66;ReadPosRankSum=1.79;SOR=4.226;VarDP=41 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:3,18:21:99:.:.:675,0:.:1,2,2,16 0|1:3,17:20:75:0|1:2320516_C_A:705,0,75:2320516:3,0,1,16 +chrX 2320533 . T C 1263 . AC=2;AF=0.667;AN=3;AS_AltDP=33;AS_QD=33.15;BaseQRankSum=3.147;DP=60;ExcessHet=0.0000;FS=30.604;MQ=55.87;MQRankSum=-0.289;QD=33.15;ReadPosRankSum=2.634;SOR=5.608;VarDP=39 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:3,17:20:99:.:.:630,0:.:1,2,1,16 0|1:3,16:19:78:0|1:2320516_C_A:663,0,78:2320516:3,0,0,16 +chrX 2320541 . C T 990 . AC=2;AF=0.667;AN=3;AS_AltDP=28;AS_QD=26.84;BaseQRankSum=3.424;DP=61;ExcessHet=0.0000;FS=41.572;MQ=55.94;MQRankSum=-0.546;QD=26.84;ReadPosRankSum=2.552;SOR=5.279;VarDP=38 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:4,14:18:99:.:.:450,0:.:2,2,1,13 0|1:6,14:20:99:0|1:2320516_C_A:570,0,210:2320516:5,1,0,14 +chrX 2320542 . C G 990 . AC=2;AF=0.667;AN=3;AS_AltDP=28;AS_QD=26.84;BaseQRankSum=2.663;DP=61;ExcessHet=0.0000;FS=41.572;MQ=55.94;MQRankSum=-0.546;QD=26.84;ReadPosRankSum=2.735;SOR=5.279;VarDP=38 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:4,14:18:99:.:.:450,0:.:2,2,1,13 0|1:6,14:20:99:0|1:2320516_C_A:570,0,210:2320516:5,1,0,14 +chrX 2320543 . A G 942 . AC=2;AF=0.667;AN=3;AS_AltDP=27;AS_QD=25.58;BaseQRankSum=3.312;DP=62;ExcessHet=0.0000;FS=45.580;MQ=56.01;MQRankSum=-0.606;QD=25.58;ReadPosRankSum=2.613;SOR=5.206;VarDP=38 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:4,13:17:99:.:.:405,0:.:2,2,1,12 0|1:7,14:21:99:0|1:2320516_C_A:567,0,252:2320516:6,1,0,14 +chrX 2320545 . C T 894 . AC=2;AF=0.667;AN=3;AS_AltDP=26;AS_QD=24.32;BaseQRankSum=3.312;DP=62;ExcessHet=0.0000;FS=49.122;MQ=56.01;MQRankSum=-0.661;QD=24.32;ReadPosRankSum=2.613;SOR=5.131;VarDP=38 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:4,12:16:99:.:.:360,0:.:2,2,1,11 0|1:8,14:22:99:0|1:2320516_C_A:564,0,294:2320516:7,1,0,14 +chrX 2320551 . T C 714 . AC=2;AF=0.667;AN=3;AS_AltDP=23;AS_QD=19.08;BaseQRankSum=2.948;DP=65;ExcessHet=0.0000;FS=52.821;MQ=56.20;MQRankSum=-0.909;QD=19.08;ReadPosRankSum=1.954;SOR=4.886;VarDP=39 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:5,12:17:99:.:.:315,0:.:3,2,1,11 0|1:11,11:22:99:0|1:2320516_C_A:429,0,429:2320516:9,2,0,11 +chrX 2320558 . A T 537 . AC=2;AF=0.667;AN=3;AS_AltDP=20;AS_QD=14.92;BaseQRankSum=1.931;DP=67;ExcessHet=0.0000;FS=53.001;MQ=56.32;MQRankSum=-1.058;QD=14.92;ReadPosRankSum=1.311;SOR=4.606;VarDP=38 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:6,11:17:99:.:.:225,0:.:4,2,1,10 0|1:12,9:21:99:0|1:2320516_C_A:342,0,477:2320516:10,2,0,9 +chrX 2320561 . G A 534 . AC=2;AF=0.667;AN=3;AS_AltDP=20;AS_QD=14.46;BaseQRankSum=2.583;DP=69;ExcessHet=0.0000;FS=56.556;MQ=56.43;MQRankSum=-1.109;QD=14.46;ReadPosRankSum=0.352;SOR=4.606;VarDP=39 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:6,11:17:99:.:.:225,0:.:4,2,1,10 0|1:13,9:22:99:0|1:2320516_C_A:339,0,519:2320516:11,2,0,9 +chrX 2320570 . G A 1419 . AC=3;AF=1.00;AN=3;AS_AltDP=39;AS_QD=26.89;DP=71;ExcessHet=0.0000;FS=0.000;MQ=56.53;QD=37.15;SOR=0.850;VarDP=39 GT:AD:DP:GQ:PL:SB 1:0,17:17:99:643,0:0,0,6,11 1/1:0,22:22:66:806,66,0:0,0,12,10 +chrX 2320576 . A G 174 . AC=1;AF=0.333;AN=3;AS_AltDP=6;AS_QD=9.27;BaseQRankSum=1.429;DP=61;ExcessHet=0.0000;FS=34.257;MQ=57.36;MQRankSum=-1.531;QD=9.27;ReadPosRankSum=-2.882;SOR=3.893;VarDP=22 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:18:9:18:.:.:0,9 0|1:16,6:22:99:.:0|1:2320516_C_A:204,0,654:2320516:14,2,0,6 +chrX 2321507 . T TG 658.97 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=6.07;BaseQRankSum=1.029;DP=118;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=6.07;ReadPosRankSum=0.08;SOR=0.730;VarDP=115 GT:AD:DP:GQ:PL:SB 1:26,31:57:99:154,0:12,14,16,15 0/1:36,22:58:99:544,0,1066:19,17,11,11 +chrX 2321610 . T C 3449 . AC=3;AF=1.00;AN=3;AS_AltDP=108;AS_QD=32.21;DP=116;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.21;SOR=0.981;VarDP=108 GT:AD:DP:GQ:PL:SB 1:0,57:57:99:1816,0:0,0,25,32 1/1:0,51:51:99:1663,153,0:0,0,22,29 +chrX 2321782 . G A 775 . AC=2;AF=0.667;AN=3;AS_AltDP=43;AS_QD=9.82;BaseQRankSum=2.305;DP=86;ExcessHet=0.0000;FS=1.816;MQ=60.00;MQRankSum=0;QD=9.82;ReadPosRankSum=1.023;SOR=0.904;VarDP=82 GT:AD:DP:GQ:PL:SB 1:19,29:48:99:420,0:7,12,16,13 0/1:20,14:34:99:385,0,543:12,8,8,6 +chrX 2321835 . G C 2486 . AC=3;AF=1.00;AN=3;AS_AltDP=78;AS_QD=31.85;BaseQRankSum=-0.116;DP=87;ExcessHet=0.0000;FS=3.066;MQ=60.00;MQRankSum=0;QD=31.85;ReadPosRankSum=-0.044;SOR=0.304;VarDP=79 GT:AD:DP:GQ:PL:SB 1:0,40:40:99:1280,0:0,0,18,22 1/1:1,38:39:82:1236,82,0:1,0,20,18 +chrX 2322164 . T G 430 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=13.14;BaseQRankSum=0.927;DP=81;ExcessHet=0.0000;FS=1.480;MQ=60.00;MQRankSum=0;QD=13.14;ReadPosRankSum=-0.017;SOR=1.186;VarDP=35 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:51:26:46:0,26 0/1:18,17:35:99:.:460,0,491:6,12,4,13 +chrX 2322555 . CA C,AA 359 . AC=1,0;AF=0.333,0.00;AN=3;AS_AltDP=22,3;AS_QD=9.49,0.00;BaseQRankSum=-0.201;DP=102;ExcessHet=0.0000;FS=0.000;MQ=59.83;MQRankSum=1.193;QD=8.84;ReadPosRankSum=0.427;SOR=0.829;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:51:26:46:0,26,26 0/1:19,22,3:44:99:.:389,0,385,448,360,1484:9,10,11,14 +chrX 2322673 . C T 965 . AC=2;AF=0.667;AN=3;AS_AltDP=65;AS_QD=8.88;BaseQRankSum=2.436;DP=115;ExcessHet=0.0000;FS=3.568;MQ=59.85;MQRankSum=0;QD=8.88;ReadPosRankSum=1.161;SOR=1.056;VarDP=112 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:33,33:66:91:.:.:91,0:.:19,14,22,11 0|1:14,32:46:99:0|1:2322673_C_T:904,0,288:2322673:7,7,19,13 +chrX 2322681 . T TA 4383.97 . AC=3;AF=1.00;AN=3;AS_AltDP=120;AS_QD=35.36;DP=125;ExcessHet=0.0000;FS=0.000;MQ=59.86;QD=36.86;SOR=1.217;VarDP=120 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,70:70:99:.:.:2508,0:.:0,0,44,26 1|1:0,50:50:99:0|1:2322673_C_T:1915,150,0:2322673:0,0,29,21 +chrX 2322876 . A G 3652 . AC=3;AF=1.00;AN=3;AS_AltDP=112;AS_QD=32.58;BaseQRankSum=2.452;DP=123;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=32.58;ReadPosRankSum=-1.643;SOR=0.238;VarDP=113 GT:AD:DP:GQ:PL:SB 1:1,57:58:99:1840,0:1,0,29,28 1/1:0,55:55:99:1842,165,0:0,0,28,27 +chrX 2322955 . G A 514 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=10.88;BaseQRankSum=0.857;DP=113;ExcessHet=0.0000;FS=16.555;MQ=60.00;MQRankSum=0;QD=10.88;ReadPosRankSum=-0.307;SOR=2.513;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:95:62:0,95 0/1:30,20:50:99:.:544,0,883:14,16,16,4 +chrX 2323067 . G GCGCCAGC 5051.97 . AC=3;AF=1.00;AN=3;AS_AltDP=115;AS_QD=31.18;DP=125;ExcessHet=0.0000;FS=0.000;MQ=59.87;QD=44.27;SOR=1.121;VarDP=115 GT:AD:DP:GQ:PL:SB 1:0,68:68:99:3043,0:0,0,26,42 1/1:0,47:47:99:2048,141,0:0,0,21,26 +chrX 2323221 . T C 849 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=7.92;BaseQRankSum=0.65;DP=115;ExcessHet=0.0000;FS=4.660;MQ=60.00;MQRankSum=0;QD=7.92;ReadPosRankSum=0.689;SOR=0.757;VarDP=111 GT:AD:DP:GQ:PL:SB 1:29,43:72:99:376,0:17,12,18,25 0/1:20,19:39:99:503,0,518:10,10,10,9 +chrX 2324057 . GAAA G,GA 2689.97 . AC=1,2;AF=0.333,0.667;AN=3;AS_AltDP=45,36;AS_QD=29.92,29.06;DP=111;ExcessHet=0.0000;FS=0.000;MQ=59.68;QD=33.69;SOR=1.497;VarDP=81 GT:AD:DP:GQ:PL:SB 2:0,15,17:32:99:873,112,0:0,0,11,21 1/2:0,30,19:49:99:1856,464,347,774,0,628:0,0,17,32 +chrX 2324489 . C T 508 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=4.20;BaseQRankSum=-0.271;DP=136;ExcessHet=0.0000;FS=0.662;MQ=60.00;MQRankSum=0;QD=4.20;ReadPosRankSum=-1.025;SOR=0.600;VarDP=128 GT:AD:DP:GQ:PL:SB 1:40,41:81:24:24,0:23,17,23,18 0/1:27,20:47:99:514,0,777:16,11,11,9 +chrX 2324909 . T C 3542 . AC=3;AF=1.00;AN=3;AS_AltDP=108;AS_QD=33.07;DP=111;ExcessHet=0.0000;FS=0.000;MQ=59.96;QD=33.07;SOR=1.077;VarDP=108 GT:AD:DP:GQ:PL:SB 1:0,47:47:99:1553,0:0,0,23,24 1/1:0,61:61:99:2019,183,0:0,0,22,39 +chrX 2324946 . GTT G,GTTT 2174.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=59,36;AS_QD=28.49,16.39;DP=114;ExcessHet=0.0000;FS=0.000;MQ=59.96;QD=23.31;SOR=1.109;VarDP=95 GT:AD:DP:GQ:PL:SB 1:0,24,14:38:99:577,0,393:0,0,18,20 1/2:0,35,22:57:99:1637,533,855,1231,0,1356:0,0,21,36 +chrX 2325851 . T TTTCTC 5195.97 . AC=3;AF=1.00;AN=3;AS_AltDP=119;AS_QD=33.77;DP=131;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.99;SOR=0.816;VarDP=119 GT:AD:DP:GQ:PL:SB 1:0,55:55:99:2440,0:0,0,34,21 1/1:0,64:64:99:2795,192,0:0,0,29,35 +chrX 2326748 . G T 2445 . AC=2;AF=0.667;AN=3;AS_AltDP=80;AS_QD=21.90;BaseQRankSum=1.791;DP=118;ExcessHet=0.0000;FS=5.099;MQ=60.00;MQRankSum=0;QD=21.90;ReadPosRankSum=-0.438;SOR=0.851;VarDP=113 GT:AD:DP:GQ:PL:SB 1:0,58:58:99:1911,0:0,0,30,28 0/1:33,22:55:99:564,0,851:15,18,15,7 +chrX 2326775 . A C 2554 . AC=2;AF=0.667;AN=3;AS_AltDP=84;AS_QD=22.28;BaseQRankSum=0.902;DP=118;ExcessHet=0.0000;FS=5.244;MQ=60.00;MQRankSum=0;QD=22.28;ReadPosRankSum=0.078;SOR=0.595;VarDP=116 GT:AD:DP:GQ:PL:SB 1:0,58:58:99:1896,0:0,0,28,30 0/1:32,26:58:99:688,0,867:13,19,17,9 +chrX 2326809 . CT C 665.97 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=7.92;BaseQRankSum=-1.678;DP=104;ExcessHet=0.0000;FS=14.653;MQ=59.92;MQRankSum=0;QD=7.92;ReadPosRankSum=0.542;SOR=1.061;VarDP=89 GT:AD:DP:GQ:PL:SB 1:14,23:37:99:237,0:6,8,13,10 0/1:28,24:52:99:468,0,570:10,18,16,8 +chrX 2327170 . G T 63 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=1.43;BaseQRankSum=-0.114;DP=130;ExcessHet=0.0000;FS=9.137;MQ=60.00;MQRankSum=0;QD=1.43;ReadPosRankSum=-0.624;SOR=0.162;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 1:31,34:65:93:.:93,0:23,8,18,16 0/0:.:58:99:58:0,104,1523 +chrX 2327262 . T C 755 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=14.02;BaseQRankSum=1.216;DP=131;ExcessHet=0.0000;FS=2.268;MQ=60.00;MQRankSum=0;QD=14.02;ReadPosRankSum=-0.976;SOR=0.907;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:74:99:74:0,199 0/1:28,28:56:99:.:785,0,755:13,15,16,12 +chrX 2327466 . C T 1013 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=14.49;BaseQRankSum=-0.48;DP=147;ExcessHet=0.0000;FS=0.904;MQ=60.00;MQRankSum=0;QD=14.49;ReadPosRankSum=-1.388;SOR=0.555;VarDP=72 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:74:99:74:0,199 0/1:34,38:72:99:.:1043,0,925:21,13,22,16 +chrX 2327776 . A G 1631 . AC=2;AF=0.667;AN=3;AS_AltDP=75;AS_QD=12.40;BaseQRankSum=-0.126;DP=141;ExcessHet=0.0000;FS=5.200;MQ=60.00;MQRankSum=0;QD=12.40;ReadPosRankSum=-0.094;SOR=0.656;VarDP=134 GT:AD:DP:GQ:PL:SB 1:20,41:61:99:719,0:7,13,20,21 0/1:39,34:73:99:942,0,1115:19,20,20,14 +chrX 2327972 . T C 3741 . AC=3;AF=1.00;AN=3;AS_AltDP=116;AS_QD=32.51;DP=120;ExcessHet=0.0000;FS=0.000;MQ=59.22;QD=32.51;SOR=0.877;VarDP=116 GT:AD:DP:GQ:PL:SB 1:0,49:49:99:1537,0:0,0,26,23 1/1:0,67:67:99:2234,201,0:0,0,37,30 +chrX 2328079 . C CAAAAAAAAA,CAAA 3939.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=70,15;AS_QD=32.46,31.69;DP=120;ExcessHet=0.0000;FS=0.000;MQ=57.83;QD=46.81;SOR=1.039;VarDP=85 GT:AD:DP:GQ:PL:SB 1:0,44,0:44:99:1945,0,1948:0,0,23,21 1/2:0,26,15:41:99:2034,639,533,1085,0,1010:0,0,26,15 +chrX 2328270 . C T 757 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=13.81;BaseQRankSum=0.888;DP=119;ExcessHet=0.0000;FS=1.023;MQ=59.97;MQRankSum=-0.948;QD=13.81;ReadPosRankSum=-0.519;SOR=0.504;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:58:99:58:0,371 0/1:28,29:57:99:.:787,0,688:11,17,13,16 +chrX 2328504 . C G 850 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=8.63;BaseQRankSum=0.852;DP=105;ExcessHet=0.0000;FS=2.603;MQ=59.21;MQRankSum=1.038;QD=8.63;ReadPosRankSum=0.9;SOR=0.848;VarDP=102 GT:AD:DP:GQ:PL:SB 1:26,26:52:6:6,0:15,11,13,13 0/1:18,32:50:99:874,0,382:8,10,13,19 +chrX 2329038 . T C 3693 . AC=3;AF=1.00;AN=3;AS_AltDP=119;AS_QD=31.03;BaseQRankSum=1.356;DP=124;ExcessHet=0.0000;FS=3.549;MQ=59.99;MQRankSum=0;QD=31.03;ReadPosRankSum=-1.059;SOR=0.640;VarDP=120 GT:AD:DP:GQ:PL:SB 1:1,71:72:99:2160,0:1,0,27,44 1/1:0,48:48:99:1563,144,0:0,0,25,23 +chrX 2329348 . T C 4218 . AC=3;AF=1.00;AN=3;AS_AltDP=134;AS_QD=31.47;BaseQRankSum=-0.447;DP=141;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=31.47;ReadPosRankSum=-0.051;SOR=0.321;VarDP=135 GT:AD:DP:GQ:PL:SB 1:1,67:68:99:2130,0:0,1,33,34 1/1:0,67:67:99:2118,200,0:0,0,27,40 +chrX 2329752 . G C 610 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=14.22;BaseQRankSum=-0.267;DP=103;ExcessHet=0.0000;FS=1.154;MQ=60.00;MQRankSum=0;QD=14.22;ReadPosRankSum=0.58;SOR=0.465;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:70:56:0,70 0/1:21,24:45:99:.:640,0,525:12,9,12,12 +chrX 2329789 . G A 583 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=14.60;BaseQRankSum=-0.36;DP=102;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.60;ReadPosRankSum=1.112;SOR=0.850;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:70:56:0,70 0/1:19,23:42:99:.:613,0,494:9,10,10,13 +chrX 2329810 . A G 685 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=6.75;BaseQRankSum=0.151;DP=112;ExcessHet=0.0000;FS=0.714;MQ=60.00;MQRankSum=0;QD=6.75;ReadPosRankSum=0.587;SOR=0.618;VarDP=106 GT:AD:DP:GQ:PL:SB 1:28,34:62:99:173,0:13,15,19,15 0/1:23,21:44:99:542,0,618:11,12,8,13 +chrX 2330062 . C G 2187 . AC=3;AF=1.00;AN=3;AS_AltDP=52;AS_QD=33.99;DP=55;ExcessHet=0.0000;FS=0.000;MQ=59.36;QD=42.63;SOR=2.393;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:1233,0:0,0,24,5 1/1:0,23:23:69:984,69,0:0,0,16,7 +chrX 2330070 . CGGCGGGGGGG C,CGGGGG,CGG 1490.97 . AC=0,2,1;AF=0.00,0.667,0.333;AN=3;AS_AltDP=9,22,3;AS_QD=28.16,34.30,27.14;DP=102;ExcessHet=0.0000;FS=12.430;MQ=49.30;MQRankSum=1.863;QD=42.50;SOR=2.515;VarDP=36 GT:AD:DP:GQ:PL:SB 2:2,9,12,0:23:99:689,114,0,649:0,2,18,3 2/3:0,0,10,3:13:96:841,707,682,147,147,96,424,422,0,388:0,0,9,4 +chrX 2330076 . G *,A 1416 . AC=1,2;AF=0.333,0.667;AN=3;AS_AltDP=12,20;AS_QD=0.00,26.60;BaseQRankSum=0;DP=79;ExcessHet=0.0000;FS=6.734;MQ=50.65;MQRankSum=3.329;QD=43.82;ReadPosRankSum=-1.215;SOR=2.717;VarDP=33 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 2:1,9,10:20:45:.:.:630,45,0:.:0,1,17,2 1|2:0,3,10:13:96:0|1:2330076_G_*:816,421,388,144,0,96:2330076:0,0,9,4 +chrX 2330078 . G *,A 1485 . AC=1,2;AF=0.333,0.667;AN=3;AS_AltDP=12,22;AS_QD=0.00,28.99;BaseQRankSum=0;DP=95;ExcessHet=0.0000;FS=6.410;MQ=48.98;MQRankSum=2.905;QD=43.29;ReadPosRankSum=-1.042;SOR=2.526;VarDP=35 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 2:1,9,12:22:99:.:.:699,135,0:.:0,1,18,3 1|2:0,3,10:13:96:0|1:2330076_G_*:816,421,388,144,0,96:2330076:0,0,9,4 +chrX 2330079 . G A 66 . AC=1;AF=0.500;AN=2;AS_AltDP=3;AS_QD=7.38;BaseQRankSum=0;DP=41;ExcessHet=0.0000;FS=0.000;MQ=48.85;MQRankSum=-1.643;QD=7.38;ReadPosRankSum=-1.103;SOR=0.446;VarDP=13 GT:AD:DP:GQ:PGT:PID:PL:PS:SB . 0|1:10,3:13:96:0|1:2330079_G_A:96,0,388:2330079:7,3,2,1 +chrX 2330081 . G A 66 . AC=1;AF=0.500;AN=2;AS_AltDP=3;AS_QD=7.38;BaseQRankSum=0.73;DP=68;ExcessHet=0.0000;FS=0.000;MQ=48.85;MQRankSum=-1.643;QD=7.38;ReadPosRankSum=-0.931;SOR=0.446;VarDP=13 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB .:.:45:0:27:.:.:0,0 0|1:10,3:13:96:.:0|1:2330079_G_A:96,0,388:2330079:7,3,2,1 +chrX 2330082 . G A 359 . AC=1;AF=0.500;AN=2;AS_AltDP=10;AS_QD=29.92;BaseQRankSum=-0.408;DP=65;ExcessHet=0.0000;FS=0.000;MQ=46.97;MQRankSum=2.008;QD=29.92;ReadPosRankSum=0.931;SOR=1.022;VarDP=13 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB .:.:45:0:27:.:.:0,0 0|1:3,10:13:96:.:0|1:2330076_G_*:389,0,96:2330076:2,1,7,3 +chrX 2330084 . G A 356 . AC=1;AF=0.333;AN=3;AS_AltDP=10;AS_QD=27.57;BaseQRankSum=-0.955;DP=99;ExcessHet=0.0000;FS=2.363;MQ=47.35;MQRankSum=1.739;QD=27.57;ReadPosRankSum=1.602;SOR=1.609;VarDP=14 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:60:17:60:.:.:0,17 0|1:4,10:14:99:.:0|1:2330076_G_*:386,0,114:2330076:2,2,7,3 +chrX 2330086 . G A 294 . AC=1;AF=0.333;AN=3;AS_AltDP=8;AS_QD=27.00;BaseQRankSum=-0.799;DP=101;ExcessHet=0.0000;FS=2.616;MQ=46.01;MQRankSum=0.967;QD=27.00;ReadPosRankSum=1.242;SOR=1.863;VarDP=12 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:17:63:.:.:0,17 0|1:4,8:12:99:.:0|1:2330076_G_*:324,0,120:2330076:2,2,6,2 +chrX 2330101 . GGAGA G,GGA 1140.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=26,17;AS_QD=29.12,33.44;DP=130;ExcessHet=0.0000;FS=0.000;MQ=47.91;QD=27.44;SOR=1.312;VarDP=43 GT:AD:DP:GQ:PL:SB 1:0,19,10:29:99:720,0,341:0,0,17,12 1/2:0,7,7:14:99:460,205,227,233,0,209:0,0,10,4 +chrX 2330169 . T A 1973 . AC=3;AF=1.00;AN=3;AS_AltDP=64;AS_QD=31.30;DP=69;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.30;SOR=0.822;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,36:36:99:1181,0:0,0,19,17 1/1:0,28:28:83:822,83,0:0,0,15,13 +chrX 2330220 . A AG 770.97 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=18.00;BaseQRankSum=-1.608;DP=79;ExcessHet=0.0000;FS=2.755;MQ=60.00;MQRankSum=0;QD=18.00;ReadPosRankSum=1.06;SOR=0.573;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:38:47:29:0,47 0/1:15,30:45:99:.:810,0,363:6,9,16,14 +chrX 2330521 . G GA 411.97 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=12.89;BaseQRankSum=0.469;DP=77;ExcessHet=0.0000;FS=1.377;MQ=59.51;MQRankSum=1.283;QD=12.89;ReadPosRankSum=-1.803;SOR=0.357;VarDP=35 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:38:47:29:0,47 0/1:14,21:35:99:.:451,0,273:9,5,11,10 +chrX 2330688 . TAGG T 815.97 . AC=2;AF=0.667;AN=3;AS_AltDP=38;AS_QD=10.96;BaseQRankSum=-0.382;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=10.96;ReadPosRankSum=0.817;SOR=0.708;VarDP=78 GT:AD:DP:GQ:PL:SB 1:16,20:36:99:176,0:12,4,13,7 0/1:24,18:42:99:679,0,920:11,13,9,9 +chrX 2331221 . C T 3558 . AC=3;AF=1.00;AN=3;AS_AltDP=111;AS_QD=32.32;DP=113;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.32;SOR=0.786;VarDP=111 GT:AD:DP:GQ:PL:SB 1:0,58:58:99:1917,0:0,0,26,32 1/1:0,53:53:99:1671,159,0:0,0,27,26 +chrX 2331436 . GTTTTTTTTTT G,GTTTTTTTTTTTTTTTT 696.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=18,7;AS_QD=23.55,25.78;BaseQRankSum=-0.788;DP=109;ExcessHet=0.0000;FS=9.890;MQ=57.76;MQRankSum=2.294;QD=27.26;ReadPosRankSum=-0.185;SOR=1.750;VarDP=27 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:80:56:0,80,80 1/2:2,18,7:27:99:.:736,265,430,504,0,744:2,0,7,18 +chrX 2331503 . C A 1302 . AC=2;AF=0.667;AN=3;AS_AltDP=50;AS_QD=16.86;BaseQRankSum=0.026;DP=80;ExcessHet=0.0000;FS=3.148;MQ=57.78;MQRankSum=-0.574;QD=16.86;ReadPosRankSum=0.957;SOR=1.007;VarDP=79 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:17,26:43:99:.:.:383,0:.:5,12,11,15 0|1:12,24:36:99:0|1:2331503_C_A:949,0,428:2331503:10,2,10,14 +chrX 2331506 . A G 1302 . AC=2;AF=0.667;AN=3;AS_AltDP=50;AS_QD=16.86;BaseQRankSum=-0.715;DP=80;ExcessHet=0.0000;FS=3.148;MQ=57.78;MQRankSum=-0.574;QD=16.86;ReadPosRankSum=1.113;SOR=1.007;VarDP=79 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:17,26:43:99:.:.:383,0:.:5,12,11,15 0|1:12,24:36:99:0|1:2331503_C_A:949,0,428:2331503:10,2,10,14 +chrX 2332372 . T G 817 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=7.99;BaseQRankSum=-0.152;DP=109;ExcessHet=0.0000;FS=4.836;MQ=60.00;MQRankSum=0;QD=7.99;ReadPosRankSum=1.212;SOR=1.220;VarDP=106 GT:AD:DP:GQ:PL:SB 1:23,28:51:99:149,0:11,12,9,19 0/1:29,26:55:99:698,0,803:15,14,12,14 +chrX 2332399 . T C 535 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=10.66;BaseQRankSum=-1.754;DP=110;ExcessHet=0.0000;FS=1.047;MQ=60.00;MQRankSum=0;QD=10.66;ReadPosRankSum=-0.134;SOR=0.518;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:39:57:0,39 0/1:29,24:53:99:.:565,0,810:16,13,12,12 +chrX 2332940 . G T 897 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=15.45;BaseQRankSum=1.416;DP=120;ExcessHet=0.0000;FS=2.198;MQ=60.00;MQRankSum=0;QD=15.45;ReadPosRankSum=-1.092;SOR=1.085;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:39:57:0,39 0/1:27,33:60:99:.:927,0,672:14,13,20,13 +chrX 2333022 . T C 675 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=12.59;BaseQRankSum=-2.184;DP=117;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=12.59;ReadPosRankSum=0.803;SOR=0.567;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:39:57:0,39 0/1:28,28:56:99:.:705,0,775:16,12,15,13 +chrX 2333229 . G C 923 . AC=2;AF=0.667;AN=3;AS_AltDP=69;AS_QD=7.50;BaseQRankSum=0.787;DP=130;ExcessHet=0.0000;FS=3.203;MQ=60.00;MQRankSum=0;QD=7.50;ReadPosRankSum=0.704;SOR=0.738;VarDP=127 GT:AD:DP:GQ:PL:SB 1:36,42:78:99:201,0:20,16,22,20 0/1:22,27:49:99:752,0,553:11,11,10,17 +chrX 2333334 . T C 681 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=11.47;BaseQRankSum=-2.308;DP=137;ExcessHet=0.0000;FS=0.979;MQ=60.00;MQRankSum=0;QD=11.47;ReadPosRankSum=0.466;SOR=0.880;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:73:99:73:0,328 0/1:33,29:62:99:.:711,0,941:19,14,18,11 +chrX 2333475 . T C 3845 . AC=3;AF=1.00;AN=3;AS_AltDP=120;AS_QD=32.29;DP=123;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.29;SOR=0.726;VarDP=120 GT:AD:DP:GQ:PL:SB 1:0,61:61:99:1974,0:0,0,29,32 1/1:0,59:59:99:1901,177,0:0,0,32,27 +chrX 2333816 . A G 458 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=9.96;BaseQRankSum=-0.234;DP=119;ExcessHet=0.0000;FS=10.441;MQ=60.00;MQRankSum=0;QD=9.96;ReadPosRankSum=0.153;SOR=0.871;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:29:64:0,29 0/1:29,20:49:99:.:488,0,822:10,19,12,8 +chrX 2333949 . C T 470 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=11.11;BaseQRankSum=-0.043;DP=112;ExcessHet=0.0000;FS=1.192;MQ=60.00;MQRankSum=0;QD=11.11;ReadPosRankSum=-0.309;SOR=1.085;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:29:64:0,29 0/1:25,20:45:99:.:500,0,648:14,11,13,7 +chrX 2334170 . C CTTTTTTTTTTTT,CTTTTTTTTTTTTT,CTTTTTTTTTTTTTT 2652.97 . AC=0,2,1;AF=0.00,0.667,0.333;AN=3;AS_AltDP=7,21,4;AS_QD=31.63,30.94,37.87;DP=83;ExcessHet=0.0000;FS=0.000;MQ=57.31;QD=84.13;SOR=1.112;VarDP=32 GT:AD:DP:GQ:PL:SB 2:0,3,15,0:18:99:972,189,0,612:0,0,14,4 2/3:0,4,6,4:14:27:1720,394,272,153,27,30,219,51,0,97:0,0,5,9 +chrX 2334362 . A G 3910 . AC=3;AF=1.00;AN=3;AS_AltDP=100;AS_QD=28.46;DP=105;ExcessHet=0.0000;FS=0.000;MQ=59.95;QD=39.40;SOR=0.733;VarDP=100 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,51:51:99:.:.:2047,0:.:0,0,26,25 1|1:0,49:49:99:0|1:2334362_A_G:1893,147,0:2334362:0,0,25,24 +chrX 2334370 . C T 1018 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=10.48;BaseQRankSum=0.117;DP=106;ExcessHet=0.0000;FS=0.749;MQ=59.95;MQRankSum=0;QD=10.48;ReadPosRankSum=0.782;SOR=0.591;VarDP=100 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:19,30:49:99:.:.:372,0:.:9,10,16,14 0|1:26,25:51:99:0|1:2334362_A_G:676,0,695:2334362:16,10,13,12 +chrX 2334556 . T C 945 . AC=2;AF=0.667;AN=3;AS_AltDP=67;AS_QD=7.93;BaseQRankSum=-0.504;DP=127;ExcessHet=0.0000;FS=0.673;MQ=60.00;MQRankSum=0;QD=7.93;ReadPosRankSum=0.126;SOR=0.590;VarDP=123 GT:AD:DP:GQ:PL:SB 1:28,32:60:18:18,0:15,13,17,15 0/1:28,35:63:99:957,0,729:15,13,17,18 +chrX 2334572 . A G 1032 . AC=2;AF=0.667;AN=3;AS_AltDP=69;AS_QD=8.23;BaseQRankSum=0.456;DP=132;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=8.23;ReadPosRankSum=-0.026;SOR=0.649;VarDP=129 GT:AD:DP:GQ:PL:SB 1:31,35:66:99:169,0:17,14,19,16 0/1:29,34:63:99:893,0,735:15,14,17,17 +chrX 2334598 . T C 4266 . AC=3;AF=1.00;AN=3;AS_AltDP=131;AS_QD=32.79;DP=133;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.79;SOR=0.771;VarDP=131 GT:AD:DP:GQ:PL:SB 1:0,72:72:99:2296,0:0,0,34,38 1/1:0,59:59:99:2000,177,0:0,0,29,30 +chrX 2335184 . C A,CA 518 . AC=0,2;AF=0.00,0.667;AN=3;AS_AltDP=2,41;AS_QD=0.00,6.94;BaseQRankSum=-0.295;DP=117;ExcessHet=0.0000;FS=0.833;MQ=59.64;MQRankSum=0.147;QD=6.77;ReadPosRankSum=0.719;SOR=0.824;VarDP=81 GT:AD:DP:GQ:PL:SB 2:18,2,19:39:99:155,1088,0:11,7,12,9 0/2:20,0,22:42:99:393,453,885,0,432,367:9,11,12,10 +chrX 2335450 . G GGT 680.97 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=16.00;BaseQRankSum=0.253;DP=120;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=16.00;ReadPosRankSum=2.196;SOR=0.570;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:69:99:69:0,208 0/1:21,24:45:99:.:720,0,581:8,13,10,14 +chrX 2335576 . G A 817 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=13.03;BaseQRankSum=0.755;DP=136;ExcessHet=0.0000;FS=0.950;MQ=60.00;MQRankSum=0;QD=13.03;ReadPosRankSum=-0.046;SOR=0.895;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:69:99:69:0,208 0/1:33,32:65:99:.:847,0,818:15,18,13,19 +chrX 2336269 . G A 441 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=3.83;BaseQRankSum=0.546;DP=125;ExcessHet=0.0000;FS=4.370;MQ=60.00;MQRankSum=0;QD=3.83;ReadPosRankSum=-0.465;SOR=0.706;VarDP=123 GT:AD:DP:GQ:PL:SB 1:30,32:62:4:4,0:10,20,17,15 0/1:41,20:61:99:467,0,1152:22,19,11,9 +chrX 2336604 . G GT 523.97 . AC=2;AF=0.667;AN=3;AS_AltDP=44;AS_QD=6.26;BaseQRankSum=-0.424;DP=108;ExcessHet=0.0000;FS=3.892;MQ=59.96;MQRankSum=1.132;QD=6.26;ReadPosRankSum=0.789;SOR=0.931;VarDP=90 GT:AD:DP:GQ:PL:SB 1:18,21:39:99:99,0:9,9,15,6 0/1:28,23:51:99:464,0,588:13,15,10,13 +chrX 2336725 . A C 1007 . AC=2;AF=0.667;AN=3;AS_AltDP=64;AS_QD=8.04;BaseQRankSum=0.8;DP=134;ExcessHet=0.0000;FS=4.212;MQ=60.00;MQRankSum=0;QD=8.04;ReadPosRankSum=0.381;SOR=1.024;VarDP=129 GT:AD:DP:GQ:PL:SB 1:26,34:60:99:271,0:12,14,15,19 0/1:39,30:69:99:766,0,1053:21,18,12,18 +chrX 2336848 . TATAG T,TATAGATAG 3151.97 . AC=1,2;AF=0.333,0.667;AN=3;AS_AltDP=61,51;AS_QD=33.46,30.44;BaseQRankSum=1.198;DP=134;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=27.99;ReadPosRankSum=-0.088;SOR=0.884;VarDP=114 GT:AD:DP:GQ:PL:SB 2:2,28,27:57:94:853,94,0:1,1,26,29 1/2:0,33,24:57:99:2338,999,989,1345,0,1296:0,0,25,32 +chrX 2337101 . A G 613 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=9.32;BaseQRankSum=1.154;DP=131;ExcessHet=0.0000;FS=3.314;MQ=59.70;MQRankSum=0.808;QD=9.32;ReadPosRankSum=0.687;SOR=0.679;VarDP=69 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:46:59:0,46 0/1:43,26:69:99:.:643,0,1137:24,19,12,14 +chrX 2337212 . T C 985 . AC=2;AF=0.667;AN=3;AS_AltDP=67;AS_QD=7.75;BaseQRankSum=-0.217;DP=136;ExcessHet=0.0000;FS=0.645;MQ=60.00;MQRankSum=0;QD=7.75;ReadPosRankSum=1.618;SOR=0.784;VarDP=131 GT:AD:DP:GQ:PL:SB 1:28,36:64:99:213,0:13,15,22,14 0/1:36,31:67:99:802,0,961:19,17,13,18 +chrX 2337672 . C T 694 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=16.09;BaseQRankSum=0.845;DP=109;ExcessHet=0.0000;FS=21.190;MQ=60.00;MQRankSum=0;QD=16.09;ReadPosRankSum=-0.354;SOR=2.139;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:85:62:0,85 0/1:20,25:45:99:.:724,0,525:13,7,6,19 +chrX 2337972 . G T 322 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=7.82;BaseQRankSum=-0.283;DP=109;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=7.82;ReadPosRankSum=0.308;SOR=0.559;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 1:19,26:45:99:.:352,0:8,11,12,14 0/0:.:63:88:63:0,88,1504 +chrX 2337974 . C A 322 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=7.82;BaseQRankSum=-0.289;DP=109;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=7.82;ReadPosRankSum=0.119;SOR=0.559;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 1:19,26:45:99:.:352,0:8,11,12,14 0/0:.:63:88:63:0,88,1504 +chrX 2338006 . CA C,CAAAA,CAA 1101.97 . AC=1,1,1;AF=0.333,0.333,0.333;AN=3;AS_AltDP=39,21,10;AS_QD=16.40,20.93,6.56;BaseQRankSum=-0.444;DP=105;ExcessHet=0.0000;FS=0.000;MQ=59.52;MQRankSum=-0.424;QD=14.63;ReadPosRankSum=-0.348;SOR=0.750;VarDP=78 GT:AD:DP:GQ:PL:SB 2:0,15,21,0:36:99:607,319,0,786:0,0,16,20 1/3:8,24,0,10:42:51:534,51,263,621,287,911,416,0,687,720:4,4,20,14 +chrX 2338162 . G A 521 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=13.12;BaseQRankSum=2.404;DP=103;ExcessHet=0.0000;FS=1.283;MQ=59.89;MQRankSum=-0.657;QD=13.12;ReadPosRankSum=1.508;SOR=0.648;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 1:14,28:42:99:.:551,0:8,6,13,15 0/0:.:59:50:59:0,50,873 +chrX 2338953 . A G 178 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=3.06;BaseQRankSum=-0.695;DP=131;ExcessHet=0.0000;FS=0.931;MQ=60.00;MQRankSum=0;QD=3.06;ReadPosRankSum=-0.426;SOR=0.859;VarDP=68 GT:AD:DP:GQ:MIN_DP:PL:SB 1:30,38:68:99:.:208,0:13,17,15,23 0/0:.:59:50:59:0,50,873 +chrX 2339558 . A C 124 . AC=1;AF=0.333;AN=3;AS_AltDP=39;AS_QD=2.17;BaseQRankSum=-1.696;DP=131;ExcessHet=0.0000;FS=0.914;MQ=60.00;MQRankSum=0;QD=2.17;ReadPosRankSum=0.462;SOR=0.505;VarDP=71 GT:AD:DP:GQ:MIN_DP:PL:SB 1:32,39:71:99:.:154,0:19,13,21,18 0/0:.:59:50:59:0,50,873 +chrX 2340519 . T G 238 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=4.62;BaseQRankSum=2.86;DP=119;ExcessHet=0.0000;FS=3.683;MQ=60.00;MQRankSum=0;QD=4.62;ReadPosRankSum=1.674;SOR=1.027;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 1:26,32:58:99:.:268,0:14,12,13,19 0/0:.:59:50:59:0,50,873 +chrX 2340554 . C T 229 . AC=1;AF=0.333;AN=3;AS_AltDP=39;AS_QD=3.70;BaseQRankSum=0.722;DP=130;ExcessHet=0.0000;FS=4.742;MQ=60.00;MQRankSum=0;QD=3.70;ReadPosRankSum=-0.308;SOR=1.202;VarDP=70 GT:AD:DP:GQ:MIN_DP:PL:SB 1:31,39:70:99:.:259,0:16,15,15,24 0/0:.:59:50:59:0,50,873 +chrX 2340577 . C A 85 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=1.83;BaseQRankSum=2.654;DP=123;ExcessHet=0.0000;FS=6.768;MQ=60.00;MQRankSum=0;QD=1.83;ReadPosRankSum=-0.923;SOR=1.293;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 1:30,33:63:99:.:115,0:16,14,12,21 0/0:.:59:50:59:0,50,873 +chrX 2340941 . C G 3249 . AC=2;AF=0.667;AN=3;AS_AltDP=108;AS_QD=25.03;BaseQRankSum=-0.546;DP=135;ExcessHet=0.0000;FS=7.547;MQ=60.00;MQRankSum=0;QD=25.03;ReadPosRankSum=2.048;SOR=0.331;VarDP=131 GT:AD:DP:GQ:PL:SB 1:0,76:76:99:2491,0:0,0,42,34 0/1:23,32:55:99:788,0,561:8,15,13,19 +chrX 2341651 . CTT C,TTT 359 . AC=1,0;AF=0.333,0.00;AN=3;AS_AltDP=14,2;AS_QD=10.81,0.00;BaseQRankSum=-1.721;DP=120;ExcessHet=0.0000;FS=4.901;MQ=59.85;MQRankSum=0.906;QD=10.24;ReadPosRankSum=1.863;SOR=0.223;VarDP=38 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:70:99:70:0,233,233 0/1:22,14,2:38:99:.:389,0,721,450,576,1311:15,7,8,8 +chrX 2341744 . C CCCTGATAAGAAATAAAATATTACAAAATGCTT,T 4087 . AC=3,0;AF=1.00,0.00;AN=3;AS_AltDP=77,0;AS_QD=25.30,31.89;DP=128;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=53.47;SOR=0.887;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,41,0:41:99:1699,0,1705:0,0,21,20 1/1:0,36,0:36:99:2418,165,0,1154,130,1327:0,0,14,22 +chrX 2341890 . T C 743 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=14.05;BaseQRankSum=0.069;DP=123;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.05;ReadPosRankSum=-0.017;SOR=0.760;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:70:45:66:0,45 0/1:26,29:55:99:.:773,0,699:13,13,14,15 +chrX 2342086 . G A 673 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=11.72;BaseQRankSum=0.439;DP=128;ExcessHet=0.0000;FS=0.972;MQ=59.94;MQRankSum=-1.036;QD=11.72;ReadPosRankSum=-0.541;SOR=0.855;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:70:45:66:0,45 0/1:32,28:60:99:.:703,0,812:17,15,16,12 +chrX 2342253 . T C 4941 . AC=3;AF=1.00;AN=3;AS_AltDP=151;AS_QD=32.92;DP=157;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.92;SOR=0.818;VarDP=151 GT:AD:DP:GQ:PL:SB 1:0,71:71:99:2342,0:0,0,34,37 1/1:0,80:80:99:2629,241,0:0,0,37,43 +chrX 2342707 . T A 467 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=9.20;BaseQRankSum=2.413;DP=127;ExcessHet=0.0000;FS=8.209;MQ=60.00;MQRankSum=0;QD=9.20;ReadPosRankSum=-0.236;SOR=1.888;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:70:81:70:0,81 0/1:35,19:54:99:.:497,0,1001:17,18,5,14 +chrX 2342892 . C T 474 . AC=2;AF=0.667;AN=3;AS_AltDP=45;AS_QD=5.31;BaseQRankSum=1.962;DP=98;ExcessHet=0.0000;FS=3.836;MQ=60.00;MQRankSum=0;QD=5.31;ReadPosRankSum=1.236;SOR=0.819;VarDP=95 GT:AD:DP:GQ:PL:SB 1:31,29:60:77:77,0:17,14,11,18 0/1:19,16:35:99:427,0,491:10,9,9,7 +chrX 2343692 . C T 905 . AC=2;AF=0.667;AN=3;AS_AltDP=71;AS_QD=6.98;BaseQRankSum=0.472;DP=135;ExcessHet=0.0000;FS=0.640;MQ=60.00;MQRankSum=0;QD=6.98;ReadPosRankSum=0.254;SOR=0.617;VarDP=134 GT:AD:DP:GQ:PL:SB 1:37,37:74:3:3,0:17,20,17,20 0/1:26,34:60:99:932,0,659:11,15,16,18 +chrX 2344025 . T C 3228 . AC=3;AF=1.00;AN=3;AS_AltDP=103;AS_QD=31.63;DP=111;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.63;SOR=0.752;VarDP=103 GT:AD:DP:GQ:PL:SB 1:0,57:57:99:1791,0:0,0,25,32 1/1:0,46:46:99:1467,137,0:0,0,25,21 +chrX 2344134 . C T 3482 . AC=3;AF=1.00;AN=3;AS_AltDP=111;AS_QD=31.64;DP=115;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.64;SOR=0.865;VarDP=111 GT:AD:DP:GQ:PL:SB 1:0,52:52:99:1662,0:0,0,22,30 1/1:0,59:59:99:1850,176,0:0,0,29,30 +chrX 2344872 . CATATATATATATAT C,CATATATAT,CATAT,CATATATATATAT 1292.97 . AC=1,0,1,1;AF=0.333,0.00,0.333,0.333;AN=3;AS_AltDP=20,7,17,7;AS_QD=20.96,0.00,33.75,17.60;BaseQRankSum=-0.819;DP=98;ExcessHet=0.0000;FS=0.000;MQ=59.93;MQRankSum=0;QD=24.67;ReadPosRankSum=-0.248;SOR=0.563;VarDP=54 GT:AD:DP:GQ:PL:SB 1:2,20,7,0,0:29:99:482,0,489,721,721:1,1,13,14 3/4:1,0,0,17,7:25:99:850,879,1010,879,1010,1010,175,331,331,387,676,707,707,0,674:0,1,9,15 +chrX 2345596 . A G 2582 . AC=3;AF=1.00;AN=3;AS_AltDP=80;AS_QD=32.65;DP=82;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.65;SOR=1.096;VarDP=80 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,35:35:99:.:.:955,0:.:0,0,20,15 1|1:0,45:45:99:0|1:2345596_A_G:1657,135,0:2345596:0,0,27,18 +chrX 2345617 . C T 564 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=12.64;BaseQRankSum=-0.06;DP=86;ExcessHet=0.0000;FS=1.134;MQ=60.00;MQRankSum=0;QD=12.64;ReadPosRankSum=1.001;SOR=0.976;VarDP=47 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:38:99:38:.:.:0,957 0|1:24,23:47:99:.:0|1:2345596_A_G:594,0,628:2345596:13,11,14,9 +chrX 2345655 . CA C,TA 1624 . AC=3,0;AF=1.00,0.00;AN=3;AS_AltDP=79,0;AS_QD=20.68,0.00;DP=109;ExcessHet=0.0000;FS=0.000;MQ=59.41;MQRankSum=-0.116;QD=20.68;SOR=0.263;VarDP=80 GT:AD:DP:GQ:PL:SB 1:1,38,0:39:99:789,0,810:0,1,16,22 1/1:0,41,0:41:99:865,105,0,1003,130,1968:0,0,24,17 +chrX 2346255 . C CT,CCT 5889.97 . AC=0,3;AF=0.00,1.00;AN=3;AS_AltDP=1,132;AS_QD=31.36,29.27;DP=143;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.58;SOR=1.016;VarDP=133 GT:AD:DP:GQ:PL:SB 2:0,1,71:72:99:3212,2291,0:0,0,33,39 2/2:0,0,61:61:99:2717,2717,2717,184,184,0:0,0,24,37 +chrX 2346562 . A C 1810 . AC=1;AF=0.333;AN=3;AS_AltDP=55;AS_QD=33.45;DP=118;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.45;SOR=1.061;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,55:55:99:.:1840,0:0,0,23,32 0/0:.:62:99:62:0,106,1337 +chrX 2346653 . T TTGTTG,TTTGTTG 2611.97 . AC=2,0;AF=0.667,0.00;AN=3;AS_AltDP=59,3;AS_QD=29.68,31.80;DP=124;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=42.76;SOR=0.976;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:36:57:0,36,36 1/1:0,59,3:62:99:.:2651,192,0,1769,103,1606:0,0,27,35 +chrX 2346721 . C A 864 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=17.19;BaseQRankSum=-0.268;DP=111;ExcessHet=0.0000;FS=5.565;MQ=60.00;MQRankSum=0;QD=17.19;ReadPosRankSum=-0.606;SOR=1.202;VarDP=52 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:36:57:.:.:0,36 0|1:28,24:52:99:.:0|1:2346721_C_A:894,0,1103:2346721:13,15,15,9 +chrX 2346724 . T C 864 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=17.19;BaseQRankSum=-0.22;DP=109;ExcessHet=0.0000;FS=5.565;MQ=60.00;MQRankSum=0;QD=17.19;ReadPosRankSum=-0.634;SOR=1.202;VarDP=52 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:36:57:.:.:0,36 0|1:28,24:52:99:.:0|1:2346721_C_A:894,0,1103:2346721:13,15,15,9 +chrX 2346857 . T A 641 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=10.82;BaseQRankSum=-1.374;DP=119;ExcessHet=0.0000;FS=5.162;MQ=59.80;MQRankSum=0.883;QD=10.82;ReadPosRankSum=0.863;SOR=0.563;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:36:57:0,36 0/1:36,26:62:99:.:671,0,1054:22,14,12,14 +chrX 2347428 . T G 811 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=11.68;BaseQRankSum=-2.515;DP=132;ExcessHet=0.0000;FS=0.000;MQ=59.81;MQRankSum=1.028;QD=11.68;ReadPosRankSum=-0.49;SOR=0.593;VarDP=72 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:36:57:0,36 0/1:36,36:72:99:.:841,0,957:17,19,18,18 +chrX 2347463 . A G 1924 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=31.52;DP=121;ExcessHet=0.0000;FS=0.000;MQ=59.52;QD=31.52;SOR=0.758;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:36:57:0,36 1/1:0,62:62:99:.:1954,185,0:0,0,32,30 +chrX 2348441 . C T 997 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=16.05;BaseQRankSum=2.958;DP=122;ExcessHet=0.0000;FS=2.152;MQ=60.00;MQRankSum=0;QD=16.05;ReadPosRankSum=0.521;SOR=0.413;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:36:57:0,36 0/1:28,36:64:99:.:1027,0,671:10,18,16,20 +chrX 2348692 . AT A 300.97 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=6.54;BaseQRankSum=-0.829;DP=116;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=6.54;ReadPosRankSum=1.854;SOR=0.693;VarDP=52 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:36:57:.:.:0,36 0|1:33,19:52:99:.:0|1:2348692_AT_A:340,0,1101:2348692:14,19,8,11 +chrX 2348698 . T A 823 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=15.23;BaseQRankSum=0.871;DP=129;ExcessHet=0.0000;FS=1.052;MQ=60.00;MQRankSum=0;QD=15.23;ReadPosRankSum=0.207;SOR=0.487;VarDP=56 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:72:5:72:.:.:0,5 0|1:24,32:56:99:.:1|0:2348692_AT_A:853,0,683:2348692:9,15,14,18 +chrX 2348963 . G C 942 . AC=1;AF=0.333;AN=3;AS_AltDP=39;AS_QD=13.69;BaseQRankSum=-0.659;DP=127;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.69;ReadPosRankSum=1.145;SOR=0.743;VarDP=71 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:55:46:55:0,46 0/1:32,39:71:99:.:972,0,774:16,16,20,19 +chrX 2349257 . A G 649 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=11.71;BaseQRankSum=-1.283;DP=116;ExcessHet=0.0000;FS=2.224;MQ=60.00;MQRankSum=0;QD=11.71;ReadPosRankSum=0.834;SOR=1.051;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:55:46:55:0,46 0/1:31,27:58:99:.:679,0,863:17,14,17,10 +chrX 2349338 . C A,CA 69 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=0,27;AS_QD=0.00,1.87;BaseQRankSum=0.016;DP=130;ExcessHet=0.0000;FS=2.386;MQ=60.00;MQRankSum=0;QD=1.87;ReadPosRankSum=-0.837;SOR=1.109;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 2:26,0,27:53:99:.:99,1198,0:11,15,9,18 0/0:.:65:99:65:0,120,1800,120,1800,1800 +chrX 2349514 . C T 281 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=5.76;BaseQRankSum=2.092;DP=120;ExcessHet=0.0000;FS=5.636;MQ=59.76;MQRankSum=0.186;QD=5.76;ReadPosRankSum=0.449;SOR=0.984;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 1:24,30:54:99:.:311,0:14,10,12,18 0/0:.:65:99:65:0,120,1800 +chrX 2349515 . G A 646 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=13.80;BaseQRankSum=1.979;DP=105;ExcessHet=0.0000;FS=1.093;MQ=60.00;MQRankSum=0;QD=13.80;ReadPosRankSum=0.15;SOR=0.495;VarDP=49 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:53:99:53:.:.:0,1747 0|1:25,24:49:99:.:0|1:2349515_G_A:676,0,662:2349515:11,14,12,12 +chrX 2349517 . G C 2135 . AC=3;AF=1.00;AN=3;AS_AltDP=79;AS_QD=20.82;BaseQRankSum=1.358;DP=105;ExcessHet=0.0000;FS=6.009;MQ=59.87;MQRankSum=0.156;QD=20.82;ReadPosRankSum=0.571;SOR=0.711;VarDP=104 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:25,30:55:99:.:.:277,0:.:15,10,12,18 1|1:0,49:49:99:0|1:2349515_G_A:1888,147,0:2349515:0,0,23,26 +chrX 2349779 . C T 64 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=1.45;BaseQRankSum=-0.045;DP=125;ExcessHet=0.0000;FS=0.938;MQ=59.35;MQRankSum=-0.488;QD=1.45;ReadPosRankSum=-0.775;SOR=0.758;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 1:31,34:65:94:.:94,0:15,16,18,16 0/0:.:59:72:59:0,72,1620 +chrX 2349789 . T C 2260 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=32.44;DP=119;ExcessHet=0.0000;FS=0.000;MQ=58.30;QD=43.21;SOR=0.981;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,1800 1/1:0,53:53:99:.:2290,160,0:0,0,30,23 +chrX 2349808 . G A 1173 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=22.70;BaseQRankSum=2.811;DP=116;ExcessHet=0.0000;FS=5.893;MQ=57.95;MQRankSum=3.344;QD=22.70;ReadPosRankSum=-1.529;SOR=1.609;VarDP=53 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:60:9:60:.:.:0,9 0|1:22,31:53:99:.:0|1:2349808_G_A:1203,0,830:2349808:11,11,21,10 +chrX 2349811 . G C 1143 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=22.56;BaseQRankSum=-0.69;DP=116;ExcessHet=0.0000;FS=5.796;MQ=57.83;MQRankSum=3.294;QD=22.56;ReadPosRankSum=-1.027;SOR=1.536;VarDP=52 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:70:63:.:.:0,70 0|1:22,30:52:99:.:0|1:2349808_G_A:1173,0,833:2349808:11,11,20,10 +chrX 2349812 . C T 1079 . AC=1;AF=0.500;AN=2;AS_AltDP=28;AS_QD=22.18;BaseQRankSum=0.713;DP=110;ExcessHet=0.0000;FS=4.076;MQ=57.74;MQRankSum=3.191;QD=22.18;ReadPosRankSum=-1.039;SOR=1.382;VarDP=50 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB .:.:59:0:59:.:.:0,0 0|1:22,28:50:99:.:0|1:2349808_G_A:1109,0,839:2349808:11,11,18,10 +chrX 2349813 . G A 778 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=16.16;BaseQRankSum=-0.694;DP=112;ExcessHet=0.0000;FS=4.076;MQ=57.74;MQRankSum=-3.158;QD=16.16;ReadPosRankSum=0.824;SOR=0.289;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,1800 0/1:28,22:50:99:.:808,0,1110:18,10,11,11 +chrX 2349817 . G A 999 . AC=1;AF=0.500;AN=2;AS_AltDP=26;AS_QD=21.89;BaseQRankSum=1.607;DP=107;ExcessHet=0.0000;FS=4.094;MQ=57.29;MQRankSum=3.161;QD=21.89;ReadPosRankSum=-0.514;SOR=1.314;VarDP=47 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB .:.:58:0:58:.:.:0,0 0|1:21,26:47:99:.:0|1:2349808_G_A:1029,0,804:2349808:11,10,17,9 +chrX 2349854 . G C 513 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=12.93;BaseQRankSum=0.117;DP=103;ExcessHet=0.0000;FS=1.242;MQ=56.93;MQRankSum=-3.612;QD=12.93;ReadPosRankSum=-1.712;SOR=0.839;VarDP=42 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:59:94:59:.:.:0,94 0|1:26,16:42:99:.:0|1:2349854_G_C:543,0,1012:2349854:14,12,7,9 +chrX 2349868 . T C 390 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=10.50;BaseQRankSum=0.81;DP=100;ExcessHet=0.0000;FS=0.000;MQ=56.70;MQRankSum=-4.347;QD=10.50;ReadPosRankSum=-1.299;SOR=0.859;VarDP=40 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:59:94:59:.:.:0,94 0|1:28,12:40:99:.:0|1:2349854_G_C:420,0,1140:2349854:13,15,5,7 +chrX 2349871 . C T 387 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=10.17;BaseQRankSum=1.478;DP=101;ExcessHet=0.0000;FS=0.000;MQ=56.78;MQRankSum=-4.416;QD=10.17;ReadPosRankSum=-1.152;SOR=0.791;VarDP=41 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:59:94:59:.:.:0,94 0|1:29,12:41:99:.:0|1:2349854_G_C:417,0,1182:2349854:13,16,5,7 +chrX 2349882 . CA C 371.97 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=9.56;BaseQRankSum=1.229;DP=103;ExcessHet=0.0000;FS=0.000;MQ=56.13;MQRankSum=-5.3;QD=9.56;ReadPosRankSum=0.157;SOR=0.804;VarDP=43 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:59:94:59:.:.:0,94 0|1:31,12:43:99:.:0|1:2349854_G_C:411,0,1266:2349854:14,17,5,7 +chrX 2349891 . T G 417 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=9.72;BaseQRankSum=0;DP=106;ExcessHet=0.0000;FS=0.000;MQ=56.40;MQRankSum=-5.909;QD=9.72;ReadPosRankSum=-1.106;SOR=0.656;VarDP=46 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:59:94:59:.:.:0,94 0|1:33,13:46:99:.:0|1:2349854_G_C:447,0,1347:2349854:15,18,6,7 +chrX 2349896 . A G 372 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=8.74;BaseQRankSum=0.216;DP=106;ExcessHet=0.0000;FS=0.000;MQ=56.40;MQRankSum=-6.244;QD=8.74;ReadPosRankSum=-1.213;SOR=0.885;VarDP=46 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:59:94:59:.:.:0,94 0|1:34,12:46:99:.:0|1:2349854_G_C:402,0,1371:2349854:16,18,5,7 +chrX 2349908 . A G 328 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=7.31;BaseQRankSum=-0.941;DP=112;ExcessHet=0.0000;FS=1.260;MQ=56.70;MQRankSum=-6.467;QD=7.31;ReadPosRankSum=0.023;SOR=0.957;VarDP=49 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:59:94:59:.:.:0,94 0|1:37,12:49:99:.:0|1:2349854_G_C:358,0,1467:2349854:18,19,5,7 +chrX 2349912 . G A 2012 . AC=3;AF=1.00;AN=3;AS_AltDP=84;AS_QD=18.56;BaseQRankSum=0.992;DP=118;ExcessHet=0.0000;FS=0.834;MQ=58.36;MQRankSum=-0.881;QD=18.56;ReadPosRankSum=-2.1;SOR=0.597;VarDP=110 GT:AD:DP:GQ:PL:SB 1:26,31:57:99:193,0:11,15,13,18 1/1:0,53:53:99:1849,159,0:0,0,25,28 +chrX 2349983 . A G 265 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=5.46;BaseQRankSum=-0.056;DP=123;ExcessHet=0.0000;FS=0.000;MQ=57.58;MQRankSum=-5.07;QD=5.46;ReadPosRankSum=-0.237;SOR=0.657;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,1717 0/1:40,14:54:99:.:295,0,1133:17,23,6,8 +chrX 2350018 . G A 1840 . AC=3;AF=1.00;AN=3;AS_AltDP=86;AS_QD=16.55;BaseQRankSum=-0.024;DP=121;ExcessHet=0.0000;FS=0.820;MQ=58.93;MQRankSum=1.601;QD=16.55;ReadPosRankSum=1.539;SOR=0.813;VarDP=113 GT:AD:DP:GQ:PL:SB 1:27,33:60:99:158,0:13,14,14,19 1/1:0,53:53:99:1712,159,0:0,0,25,28 +chrX 2350231 . G A 1488 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=32.30;DP=113;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.30;SOR=0.919;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,279 1/1:0,47:47:99:.:1518,141,0:0,0,26,21 +chrX 2351068 . C T 596 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=11.59;BaseQRankSum=-0.739;DP=121;ExcessHet=0.0000;FS=3.840;MQ=60.00;MQRankSum=0;QD=11.59;ReadPosRankSum=-0.477;SOR=0.734;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,279 0/1:29,25:54:99:.:626,0,786:12,17,14,11 +chrX 2351110 . C T 1792 . AC=3;AF=1.00;AN=3;AS_AltDP=81;AS_QD=16.87;BaseQRankSum=0.817;DP=112;ExcessHet=0.0000;FS=5.884;MQ=60.00;MQRankSum=0;QD=16.87;ReadPosRankSum=1.673;SOR=0.272;VarDP=108 GT:AD:DP:GQ:PL:SB 1:27,29:56:99:106,0:8,19,14,15 1/1:0,52:52:99:1716,155,0:0,0,22,30 +chrX 2352016 . A G 1799 . AC=3;AF=1.00;AN=3;AS_AltDP=95;AS_QD=14.18;BaseQRankSum=-0.054;DP=136;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.18;ReadPosRankSum=0.489;SOR=0.727;VarDP=129 GT:AD:DP:GQ:PL:SB 1:34,37:71:94:94,0:18,16,18,19 1/1:0,58:58:99:1735,172,0:0,0,33,25 +chrX 2352077 . T C 541 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=11.42;BaseQRankSum=0.716;DP=126;ExcessHet=0.0000;FS=12.860;MQ=60.00;MQRankSum=0;QD=11.42;ReadPosRankSum=0.684;SOR=1.492;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:74:99:74:0,1800 0/1:28,22:50:99:.:571,0,734:11,17,15,7 +chrX 2352082 . A G 1870 . AC=3;AF=1.00;AN=3;AS_AltDP=88;AS_QD=15.45;BaseQRankSum=-1.056;DP=125;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=15.45;ReadPosRankSum=-0.039;SOR=0.756;VarDP=123 GT:AD:DP:GQ:PL:SB 1:35,38:73:18:18,0:19,16,22,16 1/1:0,50:50:99:1882,150,0:0,0,27,23 +chrX 2352685 . C T 829 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=14.81;BaseQRankSum=-1.426;DP=131;ExcessHet=0.0000;FS=9.206;MQ=60.00;MQRankSum=0;QD=14.81;ReadPosRankSum=-2.215;SOR=0.753;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,1578 0/1:25,33:58:99:.:859,0,636:9,16,19,14 +chrX 2353258 . C G 1949 . AC=3;AF=1.00;AN=3;AS_AltDP=100;AS_QD=14.24;BaseQRankSum=2.621;DP=148;ExcessHet=0.0000;FS=0.000;MQ=59.91;MQRankSum=0;QD=14.24;ReadPosRankSum=1.155;SOR=0.704;VarDP=139 GT:AD:DP:GQ:PL:SB 1:38,44:82:99:149,0:21,17,23,21 1/1:1,56:57:99:1830,161,0:0,1,31,25 +chrX 2353541 . G A 709 . AC=2;AF=0.667;AN=3;AS_AltDP=64;AS_QD=5.77;BaseQRankSum=0.163;DP=131;ExcessHet=0.0000;FS=4.263;MQ=59.87;MQRankSum=0;QD=5.77;ReadPosRankSum=1.715;SOR=0.392;VarDP=128 GT:AD:DP:GQ:PL:SB 1:33,39:72:99:141,0:18,15,22,17 0/1:31,25:56:99:598,0,785:8,23,10,15 +chrX 2353584 . A ATT,ATTTT 780.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=34,16;AS_QD=3.21,10.16;BaseQRankSum=-0.235;DP=122;ExcessHet=0.0000;FS=0.000;MQ=59.47;MQRankSum=0;QD=9.01;ReadPosRankSum=0.447;SOR=0.773;VarDP=91 GT:AD:DP:GQ:PL:SB 1:22,34,0:56:99:241,0,1014:12,10,15,19 0/2:19,0,16:35:99:579,636,1409,0,773,725:6,13,6,10 +chrX 2353755 . GT G 1248.97 . AC=2;AF=0.667;AN=3;AS_AltDP=43;AS_QD=29.27;BaseQRankSum=-0.331;DP=116;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=29.27;ReadPosRankSum=1.694;SOR=0.283;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,267 1/1:1,43:44:99:.:1288,127,0:1,0,23,20 +chrX 2354660 . C T 206 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=4.07;BaseQRankSum=-1.091;DP=123;ExcessHet=0.0000;FS=5.212;MQ=59.92;MQRankSum=1.184;QD=4.07;ReadPosRankSum=0.982;SOR=0.633;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 1:25,33:58:99:.:236,0:15,10,15,18 0/0:.:61:83:61:0,83,1414 +chrX 2355278 . G A 3022 . AC=3;AF=1.00;AN=3;AS_AltDP=92;AS_QD=26.54;BaseQRankSum=0.798;DP=116;ExcessHet=0.0000;FS=3.129;MQ=60.00;MQRankSum=0;QD=26.54;ReadPosRankSum=-0.07;SOR=0.646;VarDP=115 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:23,31:54:99:.:.:359,0:.:10,13,16,15 1|1:0,61:61:99:0|1:2355278_G_A:2693,184,0:2355278:0,0,33,28 +chrX 2355283 . C G 2996 . AC=3;AF=1.00;AN=3;AS_AltDP=90;AS_QD=27.02;BaseQRankSum=-0.609;DP=114;ExcessHet=0.0000;FS=3.222;MQ=60.00;MQRankSum=0;QD=27.02;ReadPosRankSum=0.054;SOR=0.531;VarDP=112 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:22,31:53:99:.:.:393,0:.:9,13,16,15 1|1:0,59:59:99:0|1:2355278_G_A:2633,178,0:2355278:0,0,31,28 +chrX 2355332 . T C 558 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=11.31;BaseQRankSum=-0.715;DP=109;ExcessHet=0.0000;FS=5.855;MQ=60.00;MQRankSum=0;QD=11.31;ReadPosRankSum=1.032;SOR=0.236;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:55:99:55:0,1350 0/1:29,23:52:99:.:588,0,807:20,9,12,11 +chrX 2355441 . C G 1568 . AC=3;AF=1.00;AN=3;AS_AltDP=52;AS_QD=23.50;BaseQRankSum=3.229;DP=69;ExcessHet=0.0000;FS=1.092;MQ=60.00;MQRankSum=0;QD=23.50;ReadPosRankSum=-0.663;SOR=0.495;VarDP=68 GT:AD:DP:GQ:PL:SB 1:16,24:40:99:359,0:7,9,11,13 1/1:0,28:28:84:1239,84,0:0,0,15,13 +chrX 2355444 . A T 864 . AC=2;AF=0.667;AN=3;AS_AltDP=38;AS_QD=13.15;BaseQRankSum=0.474;DP=70;ExcessHet=0.0000;FS=0.907;MQ=60.00;MQRankSum=0;QD=13.15;ReadPosRankSum=-0.525;SOR=0.576;VarDP=68 GT:AD:DP:GQ:PL:SB 1:16,24:40:99:359,0:7,9,11,13 0/1:14,14:28:99:535,0,534:7,7,8,6 +chrX 2355446 . A AGGTTG 494.97 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=19.07;BaseQRankSum=0;DP=56;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=19.07;ReadPosRankSum=0.802;SOR=0.473;VarDP=28 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:99:28:0,624 0/1:14,14:28:99:.:534,0,546:8,6,7,7 +chrX 2355500 . G A 350 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=15.83;BaseQRankSum=1.171;DP=53;ExcessHet=0.0000;FS=0.000;MQ=58.65;MQRankSum=-0.836;QD=15.83;ReadPosRankSum=-1.277;SOR=0.673;VarDP=24 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:99:28:0,624 0/1:11,13:24:99:.:380,0,285:5,6,6,7 +chrX 2355511 . TAAAAAAAAAAAA T,TAAAAAAAAAAAAAA,TAAAAAAAAA 38.97 . AC=0,1,1;AF=0.00,0.333,0.333;AN=3;AS_AltDP=12,4,0;AS_QD=0.00,17.50,31.74;BaseQRankSum=0.18;DP=80;ExcessHet=0.0000;FS=7.129;MQ=57.72;MQRankSum=0.253;QD=3.00;ReadPosRankSum=-0.792;SOR=2.144;VarDP=26 GT:AD:DP:GQ:PL:SB 2:0,12,4,0:16:70:70,127,0,350:0,0,3,13 0/3:9,0,0,1:10:8:8,35,251,35,251,251,0,216,216,212:5,4,1,0 +chrX 2355586 . T C 224 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=6.51;BaseQRankSum=-1.907;DP=96;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=6.51;ReadPosRankSum=-0.624;SOR=0.776;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:55:99:55:0,358 0/1:27,12:39:99:.:254,0,797:15,12,7,5 +chrX 2355796 . G C 655 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=14.27;BaseQRankSum=0.865;DP=109;ExcessHet=0.0000;FS=1.119;MQ=60.00;MQRankSum=0;QD=14.27;ReadPosRankSum=-1.858;SOR=0.882;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:55:99:55:0,358 0/1:23,25:48:99:.:685,0,594:12,11,11,14 +chrX 2356023 . G A 503 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=13.67;BaseQRankSum=-0.894;DP=95;ExcessHet=0.0000;FS=9.750;MQ=59.36;MQRankSum=0;QD=13.67;ReadPosRankSum=0.479;SOR=0.628;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:55:99:55:0,358 0/1:18,21:39:99:.:533,0,454:5,13,12,9 +chrX 2356066 . C CA,CAA 611.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=7,16;AS_QD=30.47,33.92;DP=100;ExcessHet=0.0000;FS=0.000;MQ=58.68;QD=28.30;SOR=0.776;VarDP=23 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:55:99:55:0,358,358 1/2:0,7,16:23:76:.:651,326,253,137,0,76:0,0,11,12 +chrX 2356409 . T C 1189 . AC=2;AF=0.667;AN=3;AS_AltDP=67;AS_QD=9.99;BaseQRankSum=0.388;DP=130;ExcessHet=0.0000;FS=0.000;MQ=59.96;MQRankSum=0;QD=9.99;ReadPosRankSum=0.805;SOR=0.687;VarDP=122 GT:AD:DP:GQ:PL:SB 1:24,31:55:99:241,0:11,13,17,14 0/1:31,36:67:99:978,0,836:17,14,17,19 +chrX 2356460 . AGAT A 872.97 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=16.29;BaseQRankSum=-1.505;DP=120;ExcessHet=0.0000;FS=9.868;MQ=60.00;MQRankSum=0;QD=16.29;ReadPosRankSum=1.897;SOR=1.767;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,1648 0/1:32,24:56:99:.:912,0,1246:15,17,17,7 +chrX 2356582 . T C 382 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=8.58;BaseQRankSum=1.042;DP=110;ExcessHet=0.0000;FS=2.701;MQ=60.00;MQRankSum=0;QD=8.58;ReadPosRankSum=0.864;SOR=0.324;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,1648 0/1:32,16:48:99:.:412,0,948:20,12,8,8 +chrX 2356732 . G A 895 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=7.71;BaseQRankSum=1.914;DP=125;ExcessHet=0.0000;FS=1.467;MQ=60.00;MQRankSum=0;QD=7.71;ReadPosRankSum=0.895;SOR=0.908;VarDP=120 GT:AD:DP:GQ:PL:SB 1:28,30:58:80:80,0:12,16,12,18 0/1:32,30:62:99:845,0,865:16,16,13,17 +chrX 2357307 . C T 643 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=12.94;BaseQRankSum=-0.044;DP=117;ExcessHet=0.0000;FS=1.050;MQ=60.00;MQRankSum=0;QD=12.94;ReadPosRankSum=0.037;SOR=0.874;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,1493 0/1:27,25:52:99:.:673,0,724:15,12,15,10 +chrX 2357417 . C T 199 . AC=1;AF=0.333;AN=3;AS_AltDP=39;AS_QD=3.09;BaseQRankSum=2.661;DP=140;ExcessHet=0.0000;FS=1.873;MQ=60.00;MQRankSum=0;QD=3.09;ReadPosRankSum=-0.601;SOR=0.602;VarDP=74 GT:AD:DP:GQ:MIN_DP:PL:SB 1:35,39:74:99:.:229,0:16,19,20,19 0/0:.:64:99:64:0,120,1800 +chrX 2357700 . TAAAA TAAAAA,T 968.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=21,24;AS_QD=1.70,16.39;BaseQRankSum=4.018;DP=96;ExcessHet=0.0000;FS=3.117;MQ=59.95;MQRankSum=0;QD=13.09;ReadPosRankSum=1.112;SOR=0.402;VarDP=77 GT:AD:DP:GQ:PL:SB 1:16,21,0:37:90:90,0,413:11,5,10,11 0/2:16,0,24:40:99:918,966,1603,0,637,564:9,7,14,10 +chrX 2357859 . C T 499 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=9.28;BaseQRankSum=1.051;DP=115;ExcessHet=0.0000;FS=3.997;MQ=60.00;MQRankSum=0;QD=9.28;ReadPosRankSum=-1.123;SOR=0.279;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:54:58:0,54 0/1:35,22:57:99:.:529,0,900:11,24,10,12 +chrX 2357965 . G A 684 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=15.87;BaseQRankSum=0.755;DP=104;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=15.87;ReadPosRankSum=-0.217;SOR=0.770;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:54:58:0,54 0/1:20,25:45:99:.:714,0,530:10,10,13,12 +chrX 2358265 . G A 264 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=4.52;BaseQRankSum=2.31;DP=130;ExcessHet=0.0000;FS=0.977;MQ=60.00;MQRankSum=0;QD=4.52;ReadPosRankSum=-0.04;SOR=0.929;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 1:29,36:65:99:.:294,0:12,17,13,23 0/0:.:64:99:64:0,120,1800 +chrX 2358362 . C T 770 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=14.29;BaseQRankSum=-0.75;DP=124;ExcessHet=0.0000;FS=3.742;MQ=60.00;MQRankSum=0;QD=14.29;ReadPosRankSum=-0.254;SOR=0.947;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,1800 0/1:27,29:56:99:.:800,0,750:15,12,12,17 +chrX 2358405 . C T 4030 . AC=3;AF=1.00;AN=3;AS_AltDP=125;AS_QD=32.48;DP=127;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.48;SOR=0.845;VarDP=125 GT:AD:DP:GQ:PL:SB 1:0,66:66:99:2162,0:0,0,36,30 1/1:0,59:59:99:1898,176,0:0,0,31,28 +chrX 2358824 . C G 233 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=5.37;BaseQRankSum=1.319;DP=108;ExcessHet=0.0000;FS=4.180;MQ=60.00;MQRankSum=0;QD=5.37;ReadPosRankSum=-0.798;SOR=0.250;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 1:21,28:49:99:.:263,0:14,7,14,14 0/0:.:57:33:57:0,33,1369 +chrX 2358950 . G GA 475.97 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=11.44;BaseQRankSum=1.005;DP=123;ExcessHet=0.0000;FS=0.000;MQ=59.74;MQRankSum=0;QD=11.44;ReadPosRankSum=0.023;SOR=0.593;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,1076 0/1:17,28:45:99:.:515,0,280:9,8,14,14 +chrX 2359397 . G A 99 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=2.02;BaseQRankSum=-0.212;DP=137;ExcessHet=0.0000;FS=6.775;MQ=60.00;MQRankSum=0;QD=2.02;ReadPosRankSum=-0.437;SOR=0.887;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 1:30,34:64:99:.:129,0:12,18,20,14 0/0:.:67:99:67:0,120,1800 +chrX 2359417 . C T 713 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=13.51;BaseQRankSum=-1.165;DP=122;ExcessHet=0.0000;FS=1.029;MQ=60.00;MQRankSum=0;QD=13.51;ReadPosRankSum=-1.524;SOR=0.912;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,1717 0/1:27,28:55:99:.:743,0,754:13,14,12,16 +chrX 2359449 . G A 812 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=16.19;BaseQRankSum=0.687;DP=117;ExcessHet=0.0000;FS=2.392;MQ=60.00;MQRankSum=0;QD=16.19;ReadPosRankSum=-0.7;SOR=1.095;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,1717 0/1:21,31:52:99:.:842,0,489:10,11,12,19 +chrX 2360230 . G T 2570 . AC=2;AF=0.667;AN=3;AS_AltDP=83;AS_QD=23.01;BaseQRankSum=2.667;DP=115;ExcessHet=0.0000;FS=0.800;MQ=59.96;MQRankSum=0;QD=23.01;ReadPosRankSum=1.36;SOR=0.603;VarDP=113 GT:AD:DP:GQ:PL:SB 1:1,64:65:99:2124,0:1,0,30,34 0/1:29,19:48:99:476,0,844:15,14,11,8 +chrX 2360311 . G A 2803 . AC=2;AF=0.667;AN=3;AS_AltDP=91;AS_QD=23.22;BaseQRankSum=1.08;DP=127;ExcessHet=0.0000;FS=0.000;MQ=59.64;MQRankSum=0;QD=23.22;ReadPosRankSum=-0.126;SOR=0.750;VarDP=122 GT:AD:DP:GQ:PL:SB 1:0,62:62:99:2055,0:0,0,32,30 0/1:31,29:60:99:778,0,807:17,14,19,10 +chrX 2360400 . T C 866 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=14.93;BaseQRankSum=0.318;DP=125;ExcessHet=0.0000;FS=17.743;MQ=60.00;MQRankSum=0;QD=14.93;ReadPosRankSum=0.33;SOR=0.179;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:94:62:0,94 0/1:25,35:60:99:.:896,0,584:5,20,18,17 +chrX 2360763 . C T 666 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=15.13;BaseQRankSum=2.324;DP=111;ExcessHet=0.0000;FS=2.512;MQ=60.00;MQRankSum=0;QD=15.13;ReadPosRankSum=-0.165;SOR=0.392;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:94:62:0,94 0/1:21,25:46:99:.:696,0,512:13,8,13,12 +chrX 2360791 . G C 153 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=2.90;BaseQRankSum=-1.272;DP=119;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=2.90;ReadPosRankSum=-0.325;SOR=0.671;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 1:28,35:63:99:.:183,0:17,11,21,14 0/0:.:55:99:55:0,100,1434 +chrX 2361373 . A G 866 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=14.93;BaseQRankSum=-1.412;DP=119;ExcessHet=0.0000;FS=2.197;MQ=60.00;MQRankSum=0;QD=14.93;ReadPosRankSum=-0.135;SOR=1.049;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:58:99:58:0,1216 0/1:25,35:60:99:.:896,0,649:12,13,14,21 +chrX 2361425 . T C 974 . AC=2;AF=0.667;AN=3;AS_AltDP=70;AS_QD=7.66;BaseQRankSum=0.064;DP=135;ExcessHet=0.0000;FS=0.652;MQ=59.93;MQRankSum=0;QD=7.66;ReadPosRankSum=1.179;SOR=0.587;VarDP=131 GT:AD:DP:GQ:PL:SB 1:34,35:69:54:54,0:19,15,19,16 0/1:27,35:62:99:950,0,687:15,12,18,17 +chrX 2362410 . T C 696 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=13.44;BaseQRankSum=-2.228;DP=117;ExcessHet=0.0000;FS=1.055;MQ=59.69;MQRankSum=0;QD=13.44;ReadPosRankSum=-0.339;SOR=0.976;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,445 0/1:25,29:54:99:.:726,0,662:12,13,12,17 +chrX 2363429 . ACT A 613.97 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=15.55;BaseQRankSum=-0.469;DP=107;ExcessHet=0.0000;FS=0.000;MQ=57.53;MQRankSum=-0.251;QD=15.55;ReadPosRankSum=-1.093;SOR=0.741;VarDP=42 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:61:99:61:.:.:0,445 0|1:24,18:42:99:.:0|1:2363429_ACT_A:653,0,927:2363429:13,11,10,8 +chrX 2363495 . C T 500 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=16.06;BaseQRankSum=0.11;DP=94;ExcessHet=0.0000;FS=1.352;MQ=55.55;MQRankSum=-1.138;QD=16.06;ReadPosRankSum=0.857;SOR=0.446;VarDP=33 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:61:99:61:.:.:0,445 0|1:19,14:33:99:.:0|1:2363429_ACT_A:530,0,756:2363429:8,11,7,7 +chrX 2363506 . A C 497 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=15.50;BaseQRankSum=-3.066;DP=95;ExcessHet=0.0000;FS=0.000;MQ=55.69;MQRankSum=-1.217;QD=15.50;ReadPosRankSum=0.948;SOR=0.583;VarDP=34 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:61:99:61:.:.:0,445 0|1:20,14:34:99:.:0|1:2363429_ACT_A:527,0,798:2363429:8,12,6,8 +chrX 2363559 . T C 318 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=10.88;BaseQRankSum=-0.291;DP=93;ExcessHet=0.0000;FS=1.533;MQ=55.33;MQRankSum=-2.451;QD=10.88;ReadPosRankSum=0.041;SOR=0.327;VarDP=32 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:61:99:61:.:.:0,445 0|1:21,11:32:99:.:0|1:2363429_ACT_A:348,0,754:2363429:14,7,6,5 +chrX 2363706 . T TCCATTTTATCACCGTTCTATGGTATCATGCCG 320.97 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=10.91;BaseQRankSum=-0.193;DP=106;ExcessHet=0.0000;FS=1.562;MQ=55.26;MQRankSum=-3.941;QD=10.91;ReadPosRankSum=-1.464;SOR=0.368;VarDP=33 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:61:99:61:.:.:0,445 0|1:18,15:33:99:.:0|1:2363706_T_TCCATTTTATCACCGTTCTATGGTATCATGCCG:360,0,636:2363706:7,11,5,5 +chrX 2363982 . TGGA T 1055.97 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=19.91;BaseQRankSum=0.244;DP=119;ExcessHet=0.0000;FS=2.310;MQ=60.00;MQRankSum=0;QD=19.91;ReadPosRankSum=-0.278;SOR=1.088;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,445 0/1:27,28:55:99:.:1095,0,1049:12,15,10,18 +chrX 2364713 . TTATC T 1115.97 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=18.93;BaseQRankSum=1.865;DP=125;ExcessHet=0.0000;FS=2.139;MQ=60.00;MQRankSum=0;QD=18.93;ReadPosRankSum=0.065;SOR=0.932;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,445 0/1:31,30:61:99:.:1155,0,1207:16,15,13,17 +chrX 2364867 . T A 360 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=7.50;BaseQRankSum=1.221;DP=115;ExcessHet=0.0000;FS=1.166;MQ=60.00;MQRankSum=0;QD=7.50;ReadPosRankSum=0.893;SOR=0.864;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,445 0/1:36,16:52:99:.:390,0,1023:17,19,9,7 +chrX 2365018 . A G 946 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=16.27;BaseQRankSum=-1.006;DP=121;ExcessHet=0.0000;FS=7.179;MQ=60.00;MQRankSum=0;QD=16.27;ReadPosRankSum=-0.337;SOR=1.206;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,445 0/1:25,35:60:99:.:976,0,668:11,14,22,13 +chrX 2365360 . G A 788 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=16.36;BaseQRankSum=0.916;DP=112;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=16.36;ReadPosRankSum=-0.108;SOR=0.682;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,445 0/1:21,29:50:99:.:818,0,528:10,11,15,14 +chrX 2367435 . C CA 313.97 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=8.83;BaseQRankSum=-0.296;DP=108;ExcessHet=0.0000;FS=5.012;MQ=60.00;MQRankSum=0;QD=8.83;ReadPosRankSum=-1.808;SOR=1.034;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 1:12,28:40:99:.:353,0:7,5,11,17 0/0:.:57:49:57:0,49,1026 +chrX 2368146 . G C 60 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=1.96;BaseQRankSum=1.103;DP=105;ExcessHet=0.0000;FS=4.040;MQ=60.00;MQRankSum=0;QD=1.96;ReadPosRankSum=1.595;SOR=0.627;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 1:22,24:46:90:.:90,0:9,13,13,11 0/0:.:57:49:57:0,49,1026 +chrX 2368242 . C CA 336.97 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=8.74;BaseQRankSum=-0.14;DP=124;ExcessHet=0.0000;FS=0.000;MQ=59.90;MQRankSum=-0.977;QD=8.74;ReadPosRankSum=-2.092;SOR=0.793;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:99:66:0,1205 0/1:22,21:43:99:.:376,0,436:12,10,12,9 +chrX 2369488 . GT G 607.97 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=11.76;BaseQRankSum=-1.057;DP=123;ExcessHet=0.0000;FS=5.572;MQ=60.00;MQRankSum=0;QD=11.76;ReadPosRankSum=-0.363;SOR=0.252;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:99:66:0,1205 0/1:28,27:55:99:.:647,0,647:19,9,14,13 +chrX 2369546 . G C 709 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=13.44;BaseQRankSum=0.664;DP=126;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.44;ReadPosRankSum=-0.017;SOR=0.618;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:99:66:0,1205 0/1:26,29:55:99:.:739,0,645:14,12,15,14 +chrX 2369810 . AT A 709.97 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=13.14;BaseQRankSum=0.786;DP=125;ExcessHet=0.0000;FS=5.393;MQ=60.00;MQRankSum=0;QD=13.14;ReadPosRankSum=0.846;SOR=1.460;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:99:66:0,1205 0/1:28,29:57:99:.:749,0,718:14,14,19,10 +chrX 2369844 . T G 152 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=3.57;BaseQRankSum=-2.232;DP=112;ExcessHet=0.0000;FS=1.096;MQ=60.00;MQRankSum=0;QD=3.57;ReadPosRankSum=-3.568;SOR=0.458;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 1:22,29:51:99:.:182,0:13,9,15,14 0/0:.:58:99:58:0,112,1547 +chrX 2370180 . C CT 424.97 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=10.31;BaseQRankSum=-0.606;DP=97;ExcessHet=0.0000;FS=0.000;MQ=59.89;MQRankSum=0;QD=10.31;ReadPosRankSum=-0.41;SOR=0.646;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:42:44:0,42 0/1:24,21:45:99:.:464,0,550:10,14,9,12 +chrX 2370408 . G C 362 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=10.32;BaseQRankSum=-1.168;DP=83;ExcessHet=0.0000;FS=10.043;MQ=60.00;MQRankSum=0;QD=10.32;ReadPosRankSum=1.819;SOR=1.000;VarDP=38 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:42:44:0,42 0/1:22,16:38:99:.:392,0,604:15,7,6,10 +chrX 2370590 . GA G 123.97 . AC=1;AF=0.333;AN=3;AS_AltDP=10;AS_QD=5.43;BaseQRankSum=1.98;DP=93;ExcessHet=0.0000;FS=9.232;MQ=60.00;MQRankSum=0;QD=5.43;ReadPosRankSum=2.043;SOR=2.272;VarDP=30 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:42:44:0,42 0/1:20,10:30:99:.:163,0,351:9,11,8,2 +chrX 2371022 . T G 1013 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=10.75;BaseQRankSum=-0.672;DP=97;ExcessHet=0.0000;FS=3.794;MQ=60.00;MQRankSum=0;QD=10.75;ReadPosRankSum=1.67;SOR=1.082;VarDP=97 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:20,30:50:99:.:.:271,0:.:9,11,15,15 0|1:26,21:47:99:0|1:2371022_T_G:772,0,958:2371022:12,14,4,17 +chrX 2371043 . G T 777 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=17.17;BaseQRankSum=-1.014;DP=103;ExcessHet=0.0000;FS=8.653;MQ=60.00;MQRankSum=0;QD=17.17;ReadPosRankSum=0.128;SOR=1.911;VarDP=47 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:55:99:55:.:.:0,1376 0|1:25,22:47:99:.:0|1:2371022_T_G:807,0,923:2371022:13,12,6,16 +chrX 2371231 . TC T 460.97 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=13.16;BaseQRankSum=0.887;DP=95;ExcessHet=0.0000;FS=2.909;MQ=60.00;MQRankSum=0;QD=13.16;ReadPosRankSum=-0.79;SOR=0.283;VarDP=38 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:52:99:52:0,945 0/1:20,18:38:99:.:500,0,555:7,13,9,9 +chrX 2371404 . A ATTACCATAGACCCTCCTTCCG 1338.97 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=16.02;BaseQRankSum=-1.126;DP=104;ExcessHet=0.0000;FS=4.281;MQ=59.80;MQRankSum=0;QD=16.02;ReadPosRankSum=-1.51;SOR=1.205;VarDP=86 GT:AD:DP:GQ:PL:SB 1:18,28:46:99:431,0:9,9,16,12 0/1:15,25:40:99:947,0,556:8,7,17,8 +chrX 2371527 . CGTTACCATAGTCCGTCCTTCT C 807.97 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=17.65;BaseQRankSum=-0.09;DP=110;ExcessHet=0.0000;FS=4.156;MQ=59.64;MQRankSum=0;QD=17.65;ReadPosRankSum=1.233;SOR=0.596;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:52:99:52:0,1122 0/1:26,22:48:99:.:847,0,993:16,10,10,12 +chrX 2371668 . TCCCTCCTCCTCCCATTATCACCGC T 523.97 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=25.59;BaseQRankSum=0.404;DP=101;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=25.59;ReadPosRankSum=-0.149;SOR=0.976;VarDP=22 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:52:99:52:.:.:0,1122 0|1:8,14:22:99:.:0|1:2371668_TCCCTCCTCCTCCCATTATCACCGC_T:563,0,285:2371668:4,4,8,6 +chrX 2371690 . C A,* 2693 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=50,14;AS_QD=27.28,0.00;BaseQRankSum=3.16;DP=86;ExcessHet=0.0000;FS=7.539;MQ=60.00;MQRankSum=0;QD=41.26;ReadPosRankSum=0.705;SOR=0.787;VarDP=66 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:2,42,0:44:99:.:.:1320,0,1339:.:0,2,26,16 1|2:0,8,14:22:99:1|0:2371668_TCCCTCCTCCTCCCATTATCACCGC_T:1403,632,560,333,0,289:2371668:0,0,12,10 +chrX 2372603 . T C 556 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=11.06;BaseQRankSum=3.065;DP=119;ExcessHet=0.0000;FS=1.067;MQ=60.00;MQRankSum=0;QD=11.06;ReadPosRankSum=0.355;SOR=0.683;VarDP=53 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:65:99:65:.:.:0,446 0|1:32,21:53:99:.:0|1:2372603_T_C:586,0,1085:2372603:15,17,11,10 +chrX 2372612 . GT G 311.97 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=10.32;BaseQRankSum=-1.911;DP=111;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=10.32;ReadPosRankSum=1.309;SOR=0.715;VarDP=34 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:65:99:65:.:.:0,446 0|1:17,17:34:99:.:1|0:2372603_T_C:351,0,632:2372603:9,8,8,9 +chrX 2372840 . A G 1068 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=10.36;BaseQRankSum=0.235;DP=111;ExcessHet=0.0000;FS=6.349;MQ=59.95;MQRankSum=0;QD=10.36;ReadPosRankSum=-0.808;SOR=1.306;VarDP=106 GT:AD:DP:GQ:PL:SB 1:23,30:53:99:264,0:13,10,16,14 0/1:22,31:53:99:834,0,512:11,11,24,7 +chrX 2372894 . C G 887 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=14.79;BaseQRankSum=0.676;DP=127;ExcessHet=0.0000;FS=0.962;MQ=60.00;MQRankSum=0;QD=14.79;ReadPosRankSum=1.168;SOR=0.548;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,1752 0/1:28,34:62:99:.:917,0,663:16,12,18,16 +chrX 2373024 . A G 295 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=5.51;BaseQRankSum=0.86;DP=127;ExcessHet=0.0000;FS=1.026;MQ=60.00;MQRankSum=0;QD=5.51;ReadPosRankSum=0.322;SOR=0.948;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 1:25,34:59:99:.:325,0:14,11,21,13 0/0:.:68:99:68:0,120,1800 +chrX 2373213 . A T 678 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=11.24;BaseQRankSum=-0.138;DP=127;ExcessHet=0.0000;FS=2.105;MQ=60.00;MQRankSum=0;QD=11.24;ReadPosRankSum=-0.678;SOR=0.707;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75 0/1:35,28:63:99:.:708,0,972:19,16,13,15 +chrX 2373603 . G A 726 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=12.39;BaseQRankSum=-0.284;DP=124;ExcessHet=0.0000;FS=2.262;MQ=60.00;MQRankSum=0;QD=12.39;ReadPosRankSum=1.178;SOR=1.151;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75 0/1:32,29:61:99:.:756,0,823:13,19,9,20 +chrX 2373630 . G A 762 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=14.40;BaseQRankSum=-2.554;DP=120;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.40;ReadPosRankSum=-0.611;SOR=0.787;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75 0/1:24,31:55:99:.:792,0,655:9,15,11,20 +chrX 2374097 . A G 655 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=12.92;BaseQRankSum=-1.585;DP=118;ExcessHet=0.0000;FS=5.587;MQ=60.00;MQRankSum=0;QD=12.92;ReadPosRankSum=1.575;SOR=0.822;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75 0/1:27,26:53:99:.:685,0,729:11,16,15,11 +chrX 2374448 . T C 834 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=14.90;BaseQRankSum=-0.979;DP=125;ExcessHet=0.0000;FS=9.576;MQ=58.66;MQRankSum=-2.553;QD=14.90;ReadPosRankSum=0.626;SOR=0.445;VarDP=58 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:75:63:.:.:0,75 0|1:32,26:58:99:.:0|1:2374448_T_C:864,0,1204:2374448:10,22,14,12 +chrX 2374483 . A C 629 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=13.18;BaseQRankSum=-0.136;DP=113;ExcessHet=0.0000;FS=0.000;MQ=58.33;MQRankSum=-3.086;QD=13.18;ReadPosRankSum=1.284;SOR=0.582;VarDP=50 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:75:63:.:.:0,75 0|1:32,18:50:99:.:0|1:2374448_T_C:659,0,1289:2374448:15,17,9,9 +chrX 2374504 . C T 549 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=12.32;BaseQRankSum=2.229;DP=110;ExcessHet=0.0000;FS=1.145;MQ=58.22;MQRankSum=-3.23;QD=12.32;ReadPosRankSum=-0.581;SOR=0.527;VarDP=47 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:75:63:.:.:0,75 0|1:31,16:47:99:.:0|1:2374448_T_C:579,0,1254:2374448:14,17,8,8 +chrX 2374515 . A G 471 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=11.65;BaseQRankSum=1.629;DP=106;ExcessHet=0.0000;FS=1.267;MQ=58.05;MQRankSum=-3.352;QD=11.65;ReadPosRankSum=-1.149;SOR=0.929;VarDP=43 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:75:63:.:.:0,75 0|1:29,14:43:99:.:0|1:2374448_T_C:501,0,1176:2374448:14,15,8,6 +chrX 2374517 . TCA T 416.97 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=10.60;BaseQRankSum=0.16;DP=106;ExcessHet=0.0000;FS=1.267;MQ=58.05;MQRankSum=-3.539;QD=10.60;ReadPosRankSum=-1.431;SOR=0.735;VarDP=43 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:75:63:.:.:0,75 0|1:30,13:43:99:.:0|1:2374448_T_C:456,0,1221:2374448:14,16,7,6 +chrX 2374521 . C T 387 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=10.17;BaseQRankSum=0.685;DP=104;ExcessHet=0.0000;FS=0.000;MQ=57.96;MQRankSum=-3.63;QD=10.17;ReadPosRankSum=-1.705;SOR=0.631;VarDP=41 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:75:63:.:.:0,75 0|1:29,12:41:99:.:0|1:2374448_T_C:417,0,1182:2374448:14,15,6,6 +chrX 2374529 . G A 384 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=9.86;BaseQRankSum=2.17;DP=105;ExcessHet=0.0000;FS=0.000;MQ=57.60;MQRankSum=-3.157;QD=9.86;ReadPosRankSum=-1.755;SOR=0.576;VarDP=42 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:75:63:.:.:0,75 0|1:30,12:42:99:.:0|1:2374448_T_C:414,0,1224:2374448:16,14,6,6 +chrX 2374533 . G GAC 374.97 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=9.86;BaseQRankSum=2.388;DP=105;ExcessHet=0.0000;FS=0.000;MQ=57.60;MQRankSum=-3.157;QD=9.86;ReadPosRankSum=-2.031;SOR=0.576;VarDP=42 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:75:63:.:.:0,75 0|1:30,12:42:99:.:0|1:2374448_T_C:414,0,1224:2374448:16,14,6,6 +chrX 2374534 . TTC T 377.97 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=10.17;BaseQRankSum=1.693;DP=104;ExcessHet=0.0000;FS=0.000;MQ=57.54;MQRankSum=-3.099;QD=10.17;ReadPosRankSum=-2.13;SOR=0.518;VarDP=41 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:75:63:.:.:0,75 0|1:29,12:41:99:.:0|1:2374448_T_C:417,0,1182:2374448:16,13,6,6 +chrX 2374540 . G A 219 . AC=1;AF=0.333;AN=3;AS_AltDP=8;AS_QD=6.73;BaseQRankSum=1.707;DP=100;ExcessHet=0.0000;FS=6.345;MQ=57.29;MQRankSum=-3.384;QD=6.73;ReadPosRankSum=-1.867;SOR=1.812;VarDP=37 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:75:63:.:.:0,75 0|1:29,8:37:99:.:0|1:2374448_T_C:249,0,1194:2374448:16,13,2,6 +chrX 2374544 . G T 180 . AC=1;AF=0.333;AN=3;AS_AltDP=7;AS_QD=6.00;BaseQRankSum=1.6;DP=98;ExcessHet=0.0000;FS=3.960;MQ=57.13;MQRankSum=-3.592;QD=6.00;ReadPosRankSum=-1.857;SOR=1.561;VarDP=35 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:75:63:.:.:0,75 0|1:28,7:35:99:.:0|1:2374448_T_C:210,0,1155:2374448:15,13,2,5 +chrX 2374549 . A C 177 . AC=1;AF=0.333;AN=3;AS_AltDP=7;AS_QD=5.75;BaseQRankSum=1.576;DP=99;ExcessHet=0.0000;FS=3.960;MQ=57.21;MQRankSum=-3.656;QD=5.75;ReadPosRankSum=-2.297;SOR=1.543;VarDP=36 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:75:63:.:.:0,75 0|1:29,7:36:99:.:0|1:2374448_T_C:207,0,1186:2374448:16,13,2,5 +chrX 2376276 . A T 599 . AC=2;AF=0.667;AN=3;AS_AltDP=20;AS_QD=31.45;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.45;SOR=0.892;VarDP=20 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75 1/1:0,20:20:60:.:629,60,0:0,0,9,11 +chrX 2376598 . C T 859 . AC=2;AF=0.667;AN=3;AS_AltDP=27;AS_QD=32.93;DP=93;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.93;SOR=1.101;VarDP=27 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75 1/1:0,27:27:81:.:889,81,0:0,0,11,16 +chrX 2376949 . A G 758 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=17.51;BaseQRankSum=-2.092;DP=110;ExcessHet=0.0000;FS=1.164;MQ=59.07;MQRankSum=-1.513;QD=17.51;ReadPosRankSum=0.961;SOR=0.906;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75 0/1:16,29:45:99:.:788,0,421:8,8,16,13 +chrX 2376990 . T C 1008 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=25.32;BaseQRankSum=0.324;DP=105;ExcessHet=0.0000;FS=10.201;MQ=58.87;MQRankSum=-1.577;QD=25.32;ReadPosRankSum=0.897;SOR=0.363;VarDP=41 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:75:63:.:.:0,75 0|1:13,28:41:99:.:0|1:2376990_T_C:1038,0,391:2376990:10,3,13,15 +chrX 2376995 . CA C 1030.97 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=23.78;BaseQRankSum=0.881;DP=112;ExcessHet=0.0000;FS=12.414;MQ=59.03;MQRankSum=-1.633;QD=23.78;ReadPosRankSum=1.008;SOR=0.837;VarDP=45 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:75:63:.:.:0,75 0|1:15,30:45:99:.:0|1:2376990_T_C:1070,0,432:2376990:11,4,12,18 +chrX 2377027 . G A 1597 . AC=2;AF=0.667;AN=3;AS_AltDP=50;AS_QD=32.54;DP=113;ExcessHet=0.0000;FS=0.000;MQ=59.68;QD=32.54;SOR=1.051;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75 1/1:0,50:50:99:.:1627,149,0:0,0,21,29 +chrX 2377218 . G A 640 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=14.89;BaseQRankSum=1.095;DP=112;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.89;ReadPosRankSum=1.616;SOR=0.591;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75 0/1:21,24:45:99:.:670,0,514:9,12,11,13 +chrX 2377491 . T C 1869 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=31.13;DP=128;ExcessHet=0.0000;FS=0.000;MQ=59.94;QD=31.13;SOR=0.865;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75 1/1:0,61:61:99:.:1899,182,0:0,0,33,28 +chrX 2378018 . A G 2014 . AC=2;AF=0.667;AN=3;AS_AltDP=64;AS_QD=31.94;DP=132;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.94;SOR=1.306;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75 1/1:0,64:64:99:.:2044,191,0:0,0,40,24 +chrX 2378309 . C T 997 . AC=1;AF=0.333;AN=3;AS_AltDP=39;AS_QD=13.51;BaseQRankSum=-1.569;DP=141;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.51;ReadPosRankSum=0.567;SOR=0.691;VarDP=76 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75 0/1:37,39:76:99:.:1027,0,1003:19,18,20,19 +chrX 2378361 . C A 946 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=13.94;BaseQRankSum=-0.701;DP=135;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.94;ReadPosRankSum=0.818;SOR=0.676;VarDP=70 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75 0/1:33,37:70:99:.:976,0,847:18,15,20,17 +chrX 2378530 . T G 828 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=13.62;BaseQRankSum=0.715;DP=126;ExcessHet=0.0000;FS=3.928;MQ=60.00;MQRankSum=0;QD=13.62;ReadPosRankSum=-1.396;SOR=1.362;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75 0/1:32,31:63:99:.:858,0,873:11,21,7,24 +chrX 2378722 . G A 499 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=13.23;BaseQRankSum=0.964;DP=105;ExcessHet=0.0000;FS=2.694;MQ=60.00;MQRankSum=0;QD=13.23;ReadPosRankSum=-0.962;SOR=1.169;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75 0/1:21,19:40:99:.:529,0,580:10,11,7,12 +chrX 2378925 . A G 918 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=16.34;BaseQRankSum=0.06;DP=121;ExcessHet=0.0000;FS=3.694;MQ=60.00;MQRankSum=0;QD=16.34;ReadPosRankSum=0.197;SOR=1.244;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75 0/1:24,34:58:99:.:948,0,590:12,12,21,13 +chrX 2379350 . T C 687 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=12.58;BaseQRankSum=-1.051;DP=122;ExcessHet=0.0000;FS=3.720;MQ=60.00;MQRankSum=0;QD=12.58;ReadPosRankSum=-0.232;SOR=0.317;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75 0/1:27,30:57:99:.:717,0,698:10,17,15,15 +chrX 2379595 . G GTTT,GTTTT 384.97 . AC=1,0;AF=0.333,0.00;AN=3;AS_AltDP=6,1;AS_QD=14.13,13.16;BaseQRankSum=-0.735;DP=117;ExcessHet=0.0000;FS=7.186;MQ=59.30;MQRankSum=0;QD=13.68;ReadPosRankSum=-0.142;SOR=2.584;VarDP=31 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75,75 0/1:24,6,1:31:95:.:424,0,801,95,805,899:12,12,1,6 +chrX 2379608 . T G 559 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=12.27;BaseQRankSum=0.087;DP=113;ExcessHet=0.0000;FS=5.864;MQ=59.24;MQRankSum=1.084;QD=12.27;ReadPosRankSum=1.064;SOR=0.389;VarDP=48 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:75:63:.:.:0,75 0|1:23,25:48:99:.:0|1:2379608_T_G:589,0,768:2379608:8,15,13,12 +chrX 2379632 . G C 383 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=12.52;BaseQRankSum=-0.044;DP=97;ExcessHet=0.0000;FS=5.460;MQ=59.38;MQRankSum=0;QD=12.52;ReadPosRankSum=-0.271;SOR=1.911;VarDP=33 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:75:63:.:.:0,75 0|1:18,15:33:99:.:1|0:2379608_T_G:413,0,645:2379608:9,9,4,11 +chrX 2379766 . A G 499 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=14.30;BaseQRankSum=-1.895;DP=102;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.30;ReadPosRankSum=0.29;SOR=0.773;VarDP=37 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75 0/1:17,20:37:99:.:529,0,479:8,9,9,11 +chrX 2380091 . C T 479 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=9.79;BaseQRankSum=0.66;DP=118;ExcessHet=0.0000;FS=13.888;MQ=59.76;MQRankSum=-1.225;QD=9.79;ReadPosRankSum=0.188;SOR=0.815;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75 0/1:32,20:52:99:.:509,0,871:23,9,8,12 +chrX 2380684 . C T 1270 . AC=2;AF=0.667;AN=3;AS_AltDP=39;AS_QD=33.33;DP=104;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.33;SOR=0.743;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75 1/1:0,39:39:99:.:1300,117,0:0,0,19,20 +chrX 2380928 . G A 619 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=10.30;BaseQRankSum=-2.547;DP=127;ExcessHet=0.0000;FS=3.468;MQ=59.90;MQRankSum=0.926;QD=10.30;ReadPosRankSum=-0.408;SOR=0.889;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75 0/1:35,28:63:99:.:649,0,977:19,16,12,16 +chrX 2381797 . CAAAA C,CAAAAA 528.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=12,9;AS_QD=34.00,16.78;DP=118;ExcessHet=0.0000;FS=0.000;MQ=58.87;QD=27.05;SOR=0.784;VarDP=21 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75,75 1/2:0,12,9:21:99:.:568,160,443,435,0,417:0,0,10,11 +chrX 2382200 . C A 1901 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=33.88;DP=120;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.88;SOR=1.140;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75 1/1:0,57:57:99:.:1931,171,0:0,0,23,34 +chrX 2382739 . C T 404 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=10.59;BaseQRankSum=1.227;DP=114;ExcessHet=0.0000;FS=1.298;MQ=56.97;MQRankSum=-0.177;QD=10.59;ReadPosRankSum=-1.549;SOR=1.042;VarDP=41 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:75:63:.:.:0,75 0|1:24,17:41:99:.:0|1:2382739_C_T:434,0,570:2382739:9,15,5,12 +chrX 2382978 . C CCAT 813.97 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=24.37;BaseQRankSum=1.251;DP=106;ExcessHet=0.0000;FS=3.220;MQ=59.81;MQRankSum=-0.662;QD=24.37;ReadPosRankSum=-0.191;SOR=0.307;VarDP=35 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:75:63:.:.:0,75 0|1:12,23:35:99:.:0|1:2382978_C_CCAT:853,0,425:2382978:9,3,14,9 +chrX 2382984 . T TCAG 374.97 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=11.83;BaseQRankSum=0.417;DP=103;ExcessHet=0.0000;FS=3.220;MQ=59.79;MQRankSum=0.783;QD=11.83;ReadPosRankSum=0.417;SOR=1.329;VarDP=35 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75 0/1:23,12:35:99:.:414,0,853:14,9,9,3 +chrX 2382987 . G T 811 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=21.56;BaseQRankSum=1.844;DP=104;ExcessHet=0.0000;FS=1.309;MQ=59.80;MQRankSum=-0.782;QD=21.56;ReadPosRankSum=0.751;SOR=0.446;VarDP=39 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:75:63:.:.:0,75 0|1:16,23:39:99:.:0|1:2382978_C_CCAT:841,0,562:2382978:11,5,14,9 +chrX 2383071 . T G 520 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=12.22;BaseQRankSum=0.856;DP=110;ExcessHet=0.0000;FS=1.154;MQ=60.00;MQRankSum=0;QD=12.22;ReadPosRankSum=-1.52;SOR=0.834;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75 0/1:25,20:45:99:.:550,0,698:12,13,11,9 +chrX 2384359 . C T 849 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=14.41;BaseQRankSum=-1.534;DP=126;ExcessHet=0.0000;FS=5.205;MQ=60.00;MQRankSum=0;QD=14.41;ReadPosRankSum=-0.007;SOR=0.484;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75 0/1:27,34:61:99:.:879,0,726:10,17,18,16 +chrX 2384774 . AG A 168.97 . AC=1;AF=0.333;AN=3;AS_AltDP=10;AS_QD=11.56;BaseQRankSum=1.682;DP=85;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=11.56;ReadPosRankSum=0.133;SOR=0.976;VarDP=18 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:75:63:.:.:0,75 0|1:8,10:18:99:.:0|1:2384774_AG_A:208,0,187:2384774:6,2,8,2 +chrX 2384950 . A T 539 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=12.93;BaseQRankSum=1.489;DP=110;ExcessHet=0.0000;FS=6.422;MQ=60.00;MQRankSum=0;QD=12.93;ReadPosRankSum=0.059;SOR=1.696;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75 0/1:23,21:44:99:.:569,0,560:12,11,15,6 +chrX 2385108 . A ATG,ATGTGTG 359.97 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=0,11;AS_QD=0.00,9.50;BaseQRankSum=0.102;DP=121;ExcessHet=0.0000;FS=1.392;MQ=59.69;MQRankSum=-1.625;QD=9.50;ReadPosRankSum=1.517;SOR=1.184;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75,75 0/2:31,0,11:42:99:.:399,403,1517,0,1049,1103:16,15,7,4 +chrX 2385110 . A G,ATGTG,ATGTGTGTG 1583 . AC=1,1,0;AF=0.333,0.333,0.00;AN=3;AS_AltDP=15,18,0;AS_QD=32.37,35.60,26.82;DP=122;ExcessHet=0.0000;FS=0.000;MQ=59.70;QD=48.88;SOR=0.752;VarDP=33 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75,75,75 1/2:0,15,18,0:33:99:.:1613,714,980,579,0,497,1284,702,485,1254:0,0,17,16 +chrX 2385138 . A ATG 596.97 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=14.45;BaseQRankSum=-0.101;DP=112;ExcessHet=0.0000;FS=2.649;MQ=59.64;MQRankSum=-1.608;QD=14.45;ReadPosRankSum=-0.913;SOR=0.883;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75 0/1:25,19:44:99:.:636,0,907:11,14,11,8 +chrX 2385586 . G A 755 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=14.02;BaseQRankSum=3.097;DP=121;ExcessHet=0.0000;FS=2.268;MQ=60.00;MQRankSum=0;QD=14.02;ReadPosRankSum=-0.287;SOR=0.907;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75 0/1:28,28:56:99:.:785,0,655:15,13,12,16 +chrX 2386022 . T G 545 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=11.50;BaseQRankSum=-0.23;DP=114;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=11.50;ReadPosRankSum=0.714;SOR=0.627;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75 0/1:28,22:50:99:.:575,0,753:11,17,9,13 +chrX 2386156 . ATTATTTATTTAT A,ATTATTTATTTATTTAT 1212.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=18,13;AS_QD=34.42,26.68;DP=113;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=40.39;SOR=1.044;VarDP=31 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75,75 1/2:0,18,13:31:99:.:1252,526,699,732,0,694:0,0,18,13 +chrX 2386346 . G A 638 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=11.13;BaseQRankSum=-0.41;DP=126;ExcessHet=0.0000;FS=0.000;MQ=59.84;MQRankSum=0.938;QD=11.13;ReadPosRankSum=0.617;SOR=0.730;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75 0/1:33,27:60:99:.:668,0,862:18,15,15,12 +chrX 2387078 . C T 833 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=12.69;BaseQRankSum=1.1;DP=133;ExcessHet=0.0000;FS=3.363;MQ=60.00;MQRankSum=0;QD=12.69;ReadPosRankSum=-0.252;SOR=0.358;VarDP=68 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75 0/1:36,32:68:99:.:863,0,977:23,13,17,15 +chrX 2387550 . T C 1562 . AC=2;AF=0.667;AN=3;AS_AltDP=49;AS_QD=32.49;DP=112;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.49;SOR=1.007;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75 1/1:0,49:49:99:.:1592,146,0:0,0,21,28 +chrX 2387904 . C CA,CAA 396.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=9,7;AS_QD=29.78,29.96;DP=92;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=27.25;SOR=1.609;VarDP=16 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75,75 1/2:0,9,7:16:92:.:436,152,92,170,0,134:0,0,11,5 +chrX 2388219 . C T 617 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=10.97;BaseQRankSum=-1.508;DP=123;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=10.97;ReadPosRankSum=1.13;SOR=0.641;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75 0/1:30,29:59:99:.:647,0,762:12,18,12,17 +chrX 2389381 . A G 2331 . AC=2;AF=0.667;AN=3;AS_AltDP=73;AS_QD=32.34;DP=136;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.34;SOR=1.032;VarDP=73 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75 1/1:0,73:73:99:.:2361,218,0:0,0,42,31 +chrX 2389584 . T G 611 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=11.87;BaseQRankSum=-1.013;DP=119;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=11.87;ReadPosRankSum=0.807;SOR=0.703;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75 0/1:29,25:54:99:.:641,0,811:14,15,12,13 +chrX 2390144 . CT C,CTT 518.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=13,18;AS_QD=15.08,15.67;DP=118;ExcessHet=0.0000;FS=0.000;MQ=59.51;QD=18.00;SOR=1.044;VarDP=31 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75,75 1/2:0,13,18:31:99:.:558,362,492,276,0,318:0,0,13,18 +chrX 2390440 . AT A 415.97 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=10.34;BaseQRankSum=0.295;DP=118;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=10.34;ReadPosRankSum=1.223;SOR=0.700;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75 0/1:23,21:44:99:.:455,0,473:12,11,11,10 +chrX 2390836 . T C 1672 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=32.73;DP=132;ExcessHet=0.0000;FS=0.000;MQ=59.88;QD=32.73;SOR=0.693;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75 1/1:0,52:52:99:.:1702,156,0:0,0,26,26 +chrX 2391257 . A C 1946 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=32.93;DP=125;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.93;SOR=0.906;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75 1/1:0,60:60:99:.:1976,180,0:0,0,33,27 +chrX 2391872 . G A 885 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=14.08;BaseQRankSum=0.792;DP=128;ExcessHet=0.0000;FS=10.934;MQ=60.00;MQRankSum=0;QD=14.08;ReadPosRankSum=1.458;SOR=0.595;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75 0/1:31,34:65:99:.:915,0,792:21,10,15,19 +chrX 2392276 . C A 923 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=13.42;BaseQRankSum=0.909;DP=135;ExcessHet=0.0000;FS=6.240;MQ=60.00;MQRankSum=0;QD=13.42;ReadPosRankSum=-1.645;SOR=1.032;VarDP=71 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75 0/1:36,35:71:99:.:953,0,942:20,16,14,21 +chrX 2392452 . G A 936 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=13.42;BaseQRankSum=0.123;DP=137;ExcessHet=0.0000;FS=1.955;MQ=60.00;MQRankSum=0;QD=13.42;ReadPosRankSum=-1.955;SOR=0.637;VarDP=72 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75 0/1:36,36:72:99:.:966,0,935:20,16,17,19 +chrX 2392765 . T TATAA 2348.97 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=27.73;DP=122;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.22;SOR=1.022;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75 1/1:0,54:54:99:.:2388,162,0:0,0,23,31 +chrX 2392820 . C CAT 2421.97 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=26.60;DP=119;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.75;SOR=0.804;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75 1/1:0,55:55:99:.:2461,166,0:0,0,29,26 +chrX 2392902 . TTA T 1261.97 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=20.65;BaseQRankSum=-3.148;DP=129;ExcessHet=0.0000;FS=2.122;MQ=60.00;MQRankSum=0;QD=20.65;ReadPosRankSum=-0.352;SOR=0.420;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75 0/1:29,34:63:99:.:1301,0,1115:12,17,17,17 +chrX 2392982 . C G 872 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=15.82;BaseQRankSum=0.27;DP=123;ExcessHet=0.0000;FS=3.825;MQ=60.00;MQRankSum=0;QD=15.82;ReadPosRankSum=0.968;SOR=1.299;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75 0/1:23,34:57:99:.:902,0,539:12,11,22,12 +chrX 2393419 . T C 1719 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=31.80;DP=122;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.80;SOR=1.262;VarDP=55 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:75:63:.:.:0,75 1|1:0,55:55:99:.:0|1:2393419_T_C:1749,164,0:2393419:0,0,21,34 +chrX 2393996 . T C 1533 . AC=2;AF=0.667;AN=3;AS_AltDP=45;AS_QD=34.73;DP=111;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=34.73;SOR=0.737;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75 1/1:0,45:45:99:.:1563,135,0:0,0,22,23 +chrX 2394096 . C T 1776 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=32.84;DP=119;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.84;SOR=0.884;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75 1/1:0,55:55:99:.:1806,165,0:0,0,30,25 +chrX 2394567 . G C 1000 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=16.61;BaseQRankSum=-0.378;DP=126;ExcessHet=0.0000;FS=7.285;MQ=60.00;MQRankSum=0;QD=16.61;ReadPosRankSum=-0.545;SOR=1.582;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75 0/1:25,37:62:99:.:1030,0,649:12,13,25,12 +chrX 2395001 . GT G 787.97 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=16.88;BaseQRankSum=-1.315;DP=113;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=16.88;ReadPosRankSum=0.02;SOR=0.582;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75 0/1:23,26:49:99:.:827,0,703:9,14,11,15 +chrX 2395154 . C T 664 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=11.97;BaseQRankSum=-0.32;DP=122;ExcessHet=0.0000;FS=1.019;MQ=60.00;MQRankSum=0;QD=11.97;ReadPosRankSum=-0.725;SOR=0.898;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75 0/1:31,27:58:99:.:694,0,827:18,13,17,10 +chrX 2395507 . A T 2312 . AC=2;AF=0.667;AN=3;AS_AltDP=73;AS_QD=32.08;DP=138;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.08;SOR=0.836;VarDP=73 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75 1/1:0,73:73:99:.:2342,219,0:0,0,34,39 +chrX 2395727 . G A 1955 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=31.02;BaseQRankSum=2.721;DP=129;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=31.02;ReadPosRankSum=1.853;SOR=0.758;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75 1/1:2,62:64:99:.:1985,143,0:1,1,30,32 +chrX 2395891 . C A 1344 . AC=2;AF=0.667;AN=3;AS_AltDP=42;AS_QD=32.71;DP=105;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.71;SOR=0.892;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75 1/1:0,42:42:99:.:1374,125,0:0,0,23,19 +chrX 2396375 . C CT,CTTTTT 887.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=8,20;AS_QD=34.15,22.56;DP=110;ExcessHet=0.0000;FS=0.000;MQ=58.56;QD=33.11;SOR=1.179;VarDP=28 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75,75 1/2:0,8,20:28:99:.:927,664,604,173,0,237:0,0,17,11 +chrX 2396448 . G C 937 . AC=2;AF=0.667;AN=3;AS_AltDP=24;AS_QD=30.20;DP=87;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=40.29;SOR=0.859;VarDP=24 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75 1/1:0,24:24:72:.:967,72,0:0,0,13,11 +chrX 2396451 . C T 350 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=15.83;BaseQRankSum=0;DP=88;ExcessHet=0.0000;FS=3.524;MQ=60.00;MQRankSum=0;QD=15.83;ReadPosRankSum=-0.986;SOR=0.529;VarDP=24 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75 0/1:11,13:24:99:.:380,0,310:7,4,6,7 +chrX 2396481 . C A 1026 . AC=2;AF=0.667;AN=3;AS_AltDP=32;AS_QD=33.00;DP=96;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.00;SOR=0.818;VarDP=32 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75 1/1:0,32:32:96:.:1056,96,0:0,0,17,15 +chrX 2396765 . CT C 284.97 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=10.45;BaseQRankSum=0.307;DP=103;ExcessHet=0.0000;FS=3.365;MQ=59.55;MQRankSum=0;QD=10.45;ReadPosRankSum=1.232;SOR=0.227;VarDP=31 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75 0/1:14,17:31:99:.:324,0,248:4,10,8,9 +chrX 2396850 . C T 480 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=12.75;BaseQRankSum=-0.109;DP=107;ExcessHet=0.0000;FS=2.780;MQ=60.00;MQRankSum=0;QD=12.75;ReadPosRankSum=-0.42;SOR=0.863;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75 0/1:21,19:40:99:.:510,0,580:12,9,8,11 +chrX 2397459 . G A 1817 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=33.58;BaseQRankSum=4.402;DP=122;ExcessHet=0.0000;FS=3.254;MQ=60.00;MQRankSum=0;QD=33.58;ReadPosRankSum=0.756;SOR=0.458;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75 1/1:1,54:55:99:.:1847,155,0:0,1,29,25 +chrX 2397571 . CA C 1172.97 . AC=2;AF=0.667;AN=3;AS_AltDP=43;AS_QD=28.19;DP=115;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=28.19;SOR=0.836;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:75:63:0,75 1/1:0,43:43:99:.:1212,129,0:0,0,23,20 +chrX 2397636 . AT A 2340.97 . AC=2;AF=0.667;AN=3;AS_AltDP=88;AS_QD=19.51;BaseQRankSum=0.434;DP=135;ExcessHet=0.0000;FS=1.653;MQ=60.00;MQRankSum=0;QD=19.51;ReadPosRankSum=0.854;SOR=0.490;VarDP=122 GT:AD:DP:GQ:PL:SB 1:0,75:75:99:2149,0:0,0,32,43 0/1:34,13:47:99:231,0,824:13,21,7,6 +chrX 2397930 . G GCACA 2388.97 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=33.72;BaseQRankSum=0.439;DP=89;ExcessHet=0.0000;FS=1.130;MQ=60.00;MQRankSum=0;QD=33.72;ReadPosRankSum=0.24;SOR=0.986;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,43:43:99:1886,0:0,0,27,16 0/1:15,14:29:99:542,0,588:8,7,7,7 +chrX 2397955 . T C 2080 . AC=1;AF=0.333;AN=3;AS_AltDP=49;AS_QD=28.99;DP=103;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.06;SOR=1.473;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,49:49:99:.:2110,0:0,0,32,17 0/0:.:53:61:53:0,61,1195 +chrX 2398448 . C T 1816 . AC=1;AF=0.333;AN=3;AS_AltDP=54;AS_QD=34.19;DP=107;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=34.19;SOR=0.693;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,54:54:99:.:1846,0:0,0,27,27 0/0:.:53:61:53:0,61,1195 +chrX 2398670 . C CT 324.97 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=11.74;BaseQRankSum=0.99;DP=100;ExcessHet=0.0000;FS=13.675;MQ=58.59;MQRankSum=-1.013;QD=11.74;ReadPosRankSum=0.61;SOR=1.547;VarDP=31 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:53:99:53:0,1036 0/1:8,23:31:94:.:364,0,94:2,6,16,7 +chrX 2399001 . C T 2595 . AC=1;AF=0.333;AN=3;AS_AltDP=60;AS_QD=30.84;DP=115;ExcessHet=0.0000;FS=0.000;MQ=59.70;QD=43.75;SOR=0.831;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,60:60:99:.:2625,0:0,0,28,32 0/0:.:55:48:55:0,48,1021 +chrX 2399009 . A C 3785 . AC=2;AF=0.667;AN=3;AS_AltDP=103;AS_QD=29.57;BaseQRankSum=0.545;DP=133;ExcessHet=0.0000;FS=4.120;MQ=59.87;MQRankSum=0;QD=29.57;ReadPosRankSum=-0.758;SOR=0.385;VarDP=129 GT:AD:DP:GQ:PL:SB 1:0,61:61:99:2659,0:0,0,30,31 0/1:26,42:68:99:1156,0,640:10,16,20,22 +chrX 2399128 . A AAAATTAAACC 3951.97 . AC=2;AF=0.667;AN=3;AS_AltDP=93;AS_QD=34.11;BaseQRankSum=0.764;DP=123;ExcessHet=0.0000;FS=4.415;MQ=60.00;MQRankSum=0;QD=34.11;ReadPosRankSum=0.068;SOR=0.342;VarDP=117 GT:AD:DP:GQ:PL:SB 1:0,57:57:99:2552,0:0,0,29,28 0/1:24,36:60:99:1439,0,849:15,9,18,18 +chrX 2399172 . A G 3543 . AC=3;AF=1.00;AN=3;AS_AltDP=108;AS_QD=33.08;DP=112;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.08;SOR=0.769;VarDP=108 GT:AD:DP:GQ:PL:SB 1:0,47:47:99:1558,0:0,0,23,24 1/1:0,61:61:99:2015,183,0:0,0,33,28 +chrX 2399406 . T TAA 671.97 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=16.16;BaseQRankSum=-1.534;DP=111;ExcessHet=0.0000;FS=2.652;MQ=60.00;MQRankSum=0;QD=16.16;ReadPosRankSum=-1.482;SOR=1.079;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:55:99:55:0,793 0/1:19,25:44:99:.:711,0,548:9,10,15,10 +chrX 2399719 . A G 993 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=30.38;DP=65;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=39.35;SOR=1.981;VarDP=26 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,26:26:99:.:1023,0:0,0,19,7 0/0:.:38:33:36:0,33,955 +chrX 2399742 . AC A 432.97 . AC=2;AF=0.667;AN=3;AS_AltDP=24;AS_QD=7.87;BaseQRankSum=0.298;DP=98;ExcessHet=0.0000;FS=11.552;MQ=59.10;MQRankSum=0;QD=7.87;ReadPosRankSum=2.026;SOR=1.410;VarDP=60 GT:AD:DP:GQ:PL:SB 1:3,11:14:99:220,0:2,1,6,5 0/1:33,13:46:99:252,0,1040:13,20,10,3 +chrX 2400279 . A G 2736 . AC=2;AF=0.667;AN=3;AS_AltDP=88;AS_QD=23.05;BaseQRankSum=-0.968;DP=123;ExcessHet=0.0000;FS=0.774;MQ=60.00;MQRankSum=0;QD=23.05;ReadPosRankSum=0.793;SOR=0.633;VarDP=120 GT:AD:DP:GQ:PL:SB 1:0,66:66:99:2214,0:0,0,31,35 0/1:32,22:54:99:552,0,910:15,17,14,8 +chrX 2401108 . CTT CT,C 860.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=35,13;AS_QD=10.67,10.13;BaseQRankSum=-0.052;DP=105;ExcessHet=0.0000;FS=9.685;MQ=59.41;MQRankSum=0;QD=13.43;ReadPosRankSum=1.798;SOR=1.315;VarDP=67 GT:AD:DP:GQ:PL:SB 1:3,35,0:38:99:576,0,689:3,0,15,20 0/2:16,0,13:29:99:324,372,780,0,408,368:8,8,2,11 +chrX 2401826 . T G 2625 . AC=1;AF=0.333;AN=3;AS_AltDP=81;AS_QD=32.38;BaseQRankSum=2.111;DP=126;ExcessHet=0.0000;FS=4.225;MQ=60.00;MQRankSum=0;QD=32.38;ReadPosRankSum=-0.972;SOR=1.120;VarDP=82 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,81:82:99:.:2655,0:1,0,30,51 0/0:.:54:38:42:0,38,1080 +chrX 2401987 . A C 1804 . AC=1;AF=0.333;AN=3;AS_AltDP=62;AS_QD=28.66;BaseQRankSum=0.445;DP=106;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=28.66;ReadPosRankSum=0.868;SOR=0.758;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 1:2,62:64:99:.:1834,0:1,1,30,32 0/0:.:54:38:42:0,38,1080 +chrX 2402412 . G C 1681 . AC=1;AF=0.333;AN=3;AS_AltDP=51;AS_QD=33.55;DP=94;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.55;SOR=0.732;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,51:51:99:.:1711,0:0,0,25,26 0/0:.:54:38:42:0,38,1080 +chrX 2402695 . C T 2658 . AC=1;AF=0.333;AN=3;AS_AltDP=63;AS_QD=28.75;DP=107;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=42.67;SOR=1.270;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,63:63:99:.:2688,0:0,0,39,24 0/0:.:54:38:42:0,38,1080 +chrX 2402706 . TA T 2581.97 . AC=1;AF=0.333;AN=3;AS_AltDP=60;AS_QD=28.97;DP=102;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.68;SOR=1.255;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,60:60:99:.:2621,0:0,0,37,23 0/0:.:54:38:42:0,38,1080 +chrX 2402727 . C T 2589 . AC=1;AF=0.333;AN=3;AS_AltDP=63;AS_QD=26.15;DP=106;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=41.57;SOR=1.010;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,63:63:99:.:2619,0:0,0,36,27 0/0:.:54:38:42:0,38,1080 +chrX 2403744 . T G 2241 . AC=2;AF=0.667;AN=3;AS_AltDP=74;AS_QD=23.41;BaseQRankSum=0.974;DP=101;ExcessHet=0.0000;FS=0.906;MQ=59.31;MQRankSum=-1.369;QD=23.41;ReadPosRankSum=-0.436;SOR=0.522;VarDP=97 GT:AD:DP:GQ:PL:SB 1:0,50:50:99:1598,0:0,0,23,27 0/1:23,24:47:99:673,0,603:10,13,13,11 +chrX 2403856 . C CAA 245.97 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=6.33;BaseQRankSum=1.635;DP=118;ExcessHet=0.0000;FS=1.211;MQ=60.00;MQRankSum=0;QD=6.33;ReadPosRankSum=-2.497;SOR=0.459;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 1:17,28:45:99:.:285,0:11,6,16,12 0/0:.:56:87:56:0,87,1265 +chrX 2404114 . T C 2801 . AC=2;AF=0.667;AN=3;AS_AltDP=92;AS_QD=25.05;BaseQRankSum=0.387;DP=116;ExcessHet=0.0000;FS=25.177;MQ=60.00;MQRankSum=0;QD=25.05;ReadPosRankSum=0.555;SOR=0.559;VarDP=113 GT:AD:DP:GQ:PL:SB 1:0,60:60:99:1953,0:0,0,27,33 0/1:21,32:53:99:878,0,521:17,4,13,19 +chrX 2404741 . C T 831 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=7.24;BaseQRankSum=0.839;DP=120;ExcessHet=0.0000;FS=8.423;MQ=60.00;MQRankSum=0;QD=7.24;ReadPosRankSum=0.013;SOR=0.916;VarDP=119 GT:AD:DP:GQ:PL:SB 1:32,35:67:99:138,0:14,18,22,13 0/1:25,27:52:99:723,0,642:11,14,14,13 +chrX 2404968 . T C 3348 . AC=2;AF=0.667;AN=3;AS_AltDP=110;AS_QD=24.30;BaseQRankSum=-1.217;DP=141;ExcessHet=0.0000;FS=2.745;MQ=60.00;MQRankSum=0;QD=24.30;ReadPosRankSum=0.141;SOR=0.420;VarDP=139 GT:AD:DP:GQ:PL:SB 1:0,77:77:99:2546,0:0,0,39,38 0/1:29,33:62:99:832,0,717:17,12,16,17 +chrX 2405003 . C T 3530 . AC=2;AF=0.667;AN=3;AS_AltDP=116;AS_QD=24.90;BaseQRankSum=-0.363;DP=151;ExcessHet=0.0000;FS=4.051;MQ=60.00;MQRankSum=0;QD=24.90;ReadPosRankSum=1.001;SOR=0.497;VarDP=143 GT:AD:DP:GQ:PL:SB 1:0,81:81:99:2629,0:0,0,37,44 0/1:27,35:62:99:931,0,663:16,11,19,16 +chrX 2405447 . T C 2686 . AC=2;AF=0.667;AN=3;AS_AltDP=92;AS_QD=23.82;BaseQRankSum=1.715;DP=120;ExcessHet=0.0000;FS=0.904;MQ=59.71;MQRankSum=-0.779;QD=23.82;ReadPosRankSum=0.043;SOR=0.929;VarDP=114 GT:AD:DP:GQ:PL:SB 1:0,59:59:99:1814,0:0,0,24,35 0/1:22,33:55:99:902,0,484:11,11,17,16 +chrX 2405918 . A AC 3184.97 . AC=2;AF=0.667;AN=3;AS_AltDP=81;AS_QD=29.58;BaseQRankSum=-0.317;DP=116;ExcessHet=0.0000;FS=4.213;MQ=59.96;MQRankSum=0;QD=29.58;ReadPosRankSum=1.217;SOR=0.355;VarDP=109 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,57:58:99:.:.:2344,0:.:0,1,32,25 0|1:27,24:51:99:0|1:2405918_A_AC:880,0,1020:2405918:18,9,11,13 +chrX 2405919 . A G 850 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=17.25;BaseQRankSum=-2.001;DP=120;ExcessHet=0.0000;FS=7.843;MQ=60.00;MQRankSum=0;QD=17.25;ReadPosRankSum=1.038;SOR=0.494;VarDP=51 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:67:99:67:.:.:0,174 0|1:27,24:51:99:.:0|1:2405918_A_AC:880,0,1020:2405918:18,9,11,13 +chrX 2406032 . G A 859 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=11.70;BaseQRankSum=3.513;DP=147;ExcessHet=0.0000;FS=1.912;MQ=60.00;MQRankSum=0;QD=11.70;ReadPosRankSum=0.912;SOR=0.777;VarDP=76 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,174 0/1:43,33:76:99:.:889,0,1070:20,23,18,15 +chrX 2406443 . GT G 1851.97 . AC=2;AF=0.667;AN=3;AS_AltDP=72;AS_QD=19.91;BaseQRankSum=0.835;DP=109;ExcessHet=0.0000;FS=3.202;MQ=59.80;MQRankSum=0;QD=19.91;ReadPosRankSum=-0.703;SOR=0.402;VarDP=95 GT:AD:DP:GQ:PL:SB 1:0,49:49:99:1382,0:0,0,25,24 0/1:23,23:46:99:509,0,509:14,9,12,11 +chrX 2406646 . A G 2312 . AC=2;AF=0.667;AN=3;AS_AltDP=79;AS_QD=22.30;BaseQRankSum=-1.672;DP=108;ExcessHet=0.0000;FS=9.375;MQ=59.51;MQRankSum=-1.261;QD=22.30;ReadPosRankSum=0.524;SOR=0.212;VarDP=105 GT:AD:DP:GQ:PL:SB 1:0,47:47:99:1508,0:0,0,26,21 0/1:26,32:58:99:834,0,706:18,8,14,18 +chrX 2406684 . A G 2876 . AC=2;AF=0.667;AN=3;AS_AltDP=83;AS_QD=25.72;BaseQRankSum=-0.317;DP=117;ExcessHet=0.0000;FS=10.618;MQ=59.94;MQRankSum=1.141;QD=25.72;ReadPosRankSum=-1.797;SOR=0.196;VarDP=113 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,46:46:99:.:.:1484,0:.:0,0,23,23 0|1:30,37:67:99:0|1:2406684_A_G:1422,0,1128:2406684:21,9,19,18 +chrX 2406693 . G A 1456 . AC=1;AF=0.333;AN=3;AS_AltDP=39;AS_QD=21.54;BaseQRankSum=1.703;DP=121;ExcessHet=0.0000;FS=8.731;MQ=59.91;MQRankSum=1.169;QD=21.54;ReadPosRankSum=-1.943;SOR=0.187;VarDP=69 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:51:99:51:.:.:0,1349 0|1:30,39:69:99:.:0|1:2406684_A_G:1486,0,1132:2406684:22,8,21,18 +chrX 2407039 . C G 2569 . AC=2;AF=0.667;AN=3;AS_AltDP=82;AS_QD=24.06;BaseQRankSum=-0.974;DP=115;ExcessHet=0.0000;FS=0.850;MQ=60.00;MQRankSum=0;QD=24.06;ReadPosRankSum=-1.666;SOR=0.616;VarDP=108 GT:AD:DP:GQ:PL:SB 1:0,60:60:99:2043,0:0,0,28,32 0/1:26,22:48:99:556,0,714:12,14,14,8 +chrX 2408170 . G T 1147 . AC=2;AF=0.667;AN=3;AS_AltDP=66;AS_QD=10.42;BaseQRankSum=0.749;DP=117;ExcessHet=0.0000;FS=7.408;MQ=60.00;MQRankSum=0;QD=10.42;ReadPosRankSum=-0.101;SOR=0.642;VarDP=113 GT:AD:DP:GQ:PL:SB 1:25,27:52:95:95,0:17,8,12,15 0/1:22,39:61:99:1082,0,511:11,11,18,21 +chrX 2408701 . G GA 432.97 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=10.98;BaseQRankSum=-0.693;DP=134;ExcessHet=0.0000;FS=1.213;MQ=60.00;MQRankSum=0;QD=10.98;ReadPosRankSum=-1.052;SOR=0.416;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:79:13:79:0,13 0/1:19,24:43:99:.:472,0,399:12,7,13,11 +chrX 2408876 . C CA 693.97 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=7.26;BaseQRankSum=0.784;DP=128;ExcessHet=0.0000;FS=0.746;MQ=60.00;MQRankSum=0;QD=7.26;ReadPosRankSum=-0.43;SOR=0.605;VarDP=101 GT:AD:DP:GQ:PL:SB 1:24,36:60:99:301,0:14,10,18,18 0/1:20,21:41:99:432,0,471:11,9,13,8 +chrX 2409322 . T C 786 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=12.18;BaseQRankSum=1.192;DP=142;ExcessHet=0.0000;FS=4.788;MQ=60.00;MQRankSum=0;QD=12.18;ReadPosRankSum=-0.634;SOR=0.548;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:74:99:74:0,403 0/1:35,32:67:99:.:816,0,875:14,21,17,15 +chrX 2409920 . G C 308 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=7.04;BaseQRankSum=-1.788;DP=112;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=7.04;ReadPosRankSum=0.128;SOR=0.826;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 1:18,30:48:99:.:338,0:9,9,16,14 0/0:.:62:99:62:0,120,1800 +chrX 2410061 . T C 698 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=13.00;BaseQRankSum=-0.727;DP=107;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.00;ReadPosRankSum=-0.025;SOR=0.859;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:50:50:0,50 0/1:28,28:56:99:.:728,0,765:9,19,8,20 +chrX 2410735 . A G 2757 . AC=2;AF=0.667;AN=3;AS_AltDP=90;AS_QD=23.23;BaseQRankSum=1.139;DP=126;ExcessHet=0.0000;FS=3.892;MQ=60.00;MQRankSum=0;QD=23.23;ReadPosRankSum=-0.258;SOR=0.844;VarDP=120 GT:AD:DP:GQ:PL:SB 1:0,69:69:99:2264,0:0,0,40,29 0/1:30,21:51:99:523,0,745:14,16,10,11 +chrX 2411317 . G A 30 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=1.18;BaseQRankSum=1.703;DP=113;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=1.18;ReadPosRankSum=1.084;SOR=0.610;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 1:25,26:51:60:.:60,0:10,15,11,15 0/0:.:61:94:61:0,94,1429 +chrX 2411480 . G A 410 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=9.36;BaseQRankSum=1.23;DP=98;ExcessHet=0.0000;FS=1.230;MQ=59.90;MQRankSum=0.797;QD=9.36;ReadPosRankSum=0.764;SOR=0.418;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:49:99:49:0,973 0/1:30,17:47:99:.:440,0,804:20,10,10,7 +chrX 2411683 . C T 136 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=3.07;BaseQRankSum=0.763;DP=107;ExcessHet=0.0000;FS=1.050;MQ=59.91;MQRankSum=-0.927;QD=3.07;ReadPosRankSum=-0.113;SOR=0.997;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 1:26,28:54:99:.:166,0:13,13,16,12 0/0:.:52:75:52:0,75,1125 +chrX 2411752 . C CA 629.97 . AC=2;AF=0.667;AN=3;AS_AltDP=48;AS_QD=7.87;BaseQRankSum=-0.901;DP=91;ExcessHet=0.0000;FS=0.000;MQ=59.87;MQRankSum=-0.748;QD=7.87;ReadPosRankSum=1.289;SOR=0.784;VarDP=85 GT:AD:DP:GQ:PL:SB 1:21,34:55:99:362,0:12,9,14,20 0/1:16,14:30:99:307,0,369:5,11,7,7 +chrX 2412084 . A G 786 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=12.18;BaseQRankSum=-0.927;DP=136;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=12.18;ReadPosRankSum=1.34;SOR=0.603;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:2:67:0,2 0/1:36,31:67:99:.:816,0,1010:24,12,20,11 +chrX 2412252 . A T 2519 . AC=2;AF=0.667;AN=3;AS_AltDP=80;AS_QD=24.28;BaseQRankSum=-0.777;DP=112;ExcessHet=0.0000;FS=1.856;MQ=59.76;MQRankSum=0;QD=24.28;ReadPosRankSum=1.163;SOR=0.790;VarDP=105 GT:AD:DP:GQ:PL:SB 1:0,53:53:99:1823,0:0,0,26,27 0/1:25,27:52:99:726,0,701:13,12,11,16 +chrX 2412373 . T C 2453 . AC=2;AF=0.667;AN=3;AS_AltDP=86;AS_QD=21.22;BaseQRankSum=-0.318;DP=120;ExcessHet=0.0000;FS=2.706;MQ=60.00;MQRankSum=0;QD=21.22;ReadPosRankSum=-1.306;SOR=0.467;VarDP=117 GT:AD:DP:GQ:PL:SB 1:0,60:60:99:1830,0:0,0,29,31 0/1:31,26:57:99:653,0,811:13,18,13,13 +chrX 2413056 . A G 1879 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=21.69;BaseQRankSum=-1.826;DP=94;ExcessHet=0.0000;FS=0.887;MQ=59.33;MQRankSum=-1.549;QD=21.69;ReadPosRankSum=-0.068;SOR=0.899;VarDP=88 GT:AD:DP:GQ:PL:SB 1:0,38:38:99:1291,0:0,0,21,17 0/1:26,24:50:99:618,0,744:13,13,13,11 +chrX 2413151 . C T 736 . AC=1;AF=0.500;AN=2;AS_AltDP=28;AS_QD=13.68;BaseQRankSum=1.389;DP=108;ExcessHet=0.0000;FS=7.677;MQ=59.50;MQRankSum=0.051;QD=13.68;ReadPosRankSum=-0.59;SOR=1.863;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB .:.:50:0:50:0,0 0/1:28,28:56:99:.:766,0,695:14,14,8,20 +chrX 2413350 . C CT 3046.97 . AC=2;AF=0.667;AN=3;AS_AltDP=88;AS_QD=25.93;BaseQRankSum=-0.045;DP=121;ExcessHet=0.0000;FS=0.774;MQ=60.00;MQRankSum=0;QD=25.93;ReadPosRankSum=-0.322;SOR=0.614;VarDP=119 GT:AD:DP:GQ:PL:SB 1:0,63:63:99:2328,0:0,0,34,29 0/1:31,25:56:99:758,0,975:18,13,15,10 +chrX 2413708 . G C 75 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=1.57;BaseQRankSum=0.18;DP=131;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=1.57;ReadPosRankSum=0.797;SOR=0.631;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 1:32,35:67:99:.:105,0:15,17,17,18 0/0:.:64:99:64:0,110,1529 +chrX 2413797 . T C 2572 . AC=2;AF=0.667;AN=3;AS_AltDP=84;AS_QD=24.09;BaseQRankSum=0.578;DP=117;ExcessHet=0.0000;FS=3.035;MQ=60.00;MQRankSum=0;QD=24.09;ReadPosRankSum=-0.021;SOR=0.430;VarDP=108 GT:AD:DP:GQ:PL:SB 1:0,61:61:99:1970,0:0,0,34,27 0/1:24,23:47:99:632,0,644:10,14,8,15 +chrX 2415062 . T C 2355 . AC=2;AF=0.667;AN=3;AS_AltDP=77;AS_QD=24.59;BaseQRankSum=-0.689;DP=101;ExcessHet=0.0000;FS=0.000;MQ=59.79;MQRankSum=0;QD=24.59;ReadPosRankSum=-0.054;SOR=0.796;VarDP=97 GT:AD:DP:GQ:PL:SB 1:0,50:50:99:1632,0:0,0,20,30 0/1:20,27:47:99:753,0,530:9,11,13,14 +chrX 2416175 . C T 532 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=15.61;BaseQRankSum=-1.591;DP=89;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=15.61;ReadPosRankSum=-1.284;SOR=0.603;VarDP=36 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:52:99:52:0,973 0/1:15,21:36:99:.:562,0,402:9,6,12,9 +chrX 2416892 . T TA 2889.97 . AC=2;AF=0.667;AN=3;AS_AltDP=78;AS_QD=27.37;BaseQRankSum=0.778;DP=112;ExcessHet=0.0000;FS=0.819;MQ=60.00;MQRankSum=0;QD=27.37;ReadPosRankSum=0.323;SOR=0.742;VarDP=107 GT:AD:DP:GQ:PL:SB 1:0,55:55:99:2175,0:0,0,28,27 0/1:29,23:52:99:754,0,1000:14,15,13,10 +chrX 2416942 . T C 728 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=6.95;BaseQRankSum=-1.626;DP=109;ExcessHet=0.0000;FS=0.720;MQ=60.00;MQRankSum=0;QD=6.95;ReadPosRankSum=0.44;SOR=0.570;VarDP=109 GT:AD:DP:GQ:PL:SB 1:25,33:58:99:132,0:16,9,17,16 0/1:26,25:51:99:626,0,731:13,13,14,11 +chrX 2417146 . G A 2765 . AC=2;AF=0.667;AN=3;AS_AltDP=91;AS_QD=24.30;BaseQRankSum=-0.187;DP=121;ExcessHet=0.0000;FS=6.019;MQ=60.00;MQRankSum=0;QD=24.30;ReadPosRankSum=-0.356;SOR=0.277;VarDP=115 GT:AD:DP:GQ:PL:SB 1:0,60:60:99:1929,0:0,0,28,32 0/1:24,31:55:99:866,0,648:8,16,16,15 +chrX 2417282 . A C 3100 . AC=2;AF=0.667;AN=3;AS_AltDP=102;AS_QD=24.84;BaseQRankSum=-0.485;DP=127;ExcessHet=0.0000;FS=5.793;MQ=60.00;MQRankSum=0;QD=24.84;ReadPosRankSum=1.253;SOR=0.386;VarDP=126 GT:AD:DP:GQ:PL:SB 1:0,69:69:99:2216,0:0,0,33,36 0/1:24,33:57:99:914,0,616:15,9,17,16 +chrX 2417331 . G T 43 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=1.11;BaseQRankSum=1.173;DP=122;ExcessHet=0.0000;FS=3.370;MQ=60.00;MQRankSum=0;QD=1.11;ReadPosRankSum=1.931;SOR=0.911;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 1:33,33:66:73:.:73,0:15,18,19,14 0/0:.:55:85:55:0,85,1254 +chrX 2417462 . G A 2561 . AC=2;AF=0.667;AN=3;AS_AltDP=86;AS_QD=23.13;BaseQRankSum=0.508;DP=116;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=23.13;ReadPosRankSum=-0.824;SOR=0.727;VarDP=112 GT:AD:DP:GQ:PL:SB 1:0,60:60:99:1933,0:0,0,36,24 0/1:26,26:52:99:658,0,653:15,11,14,12 +chrX 2418328 . G A 2180 . AC=2;AF=0.667;AN=3;AS_AltDP=73;AS_QD=22.78;BaseQRankSum=1.745;DP=100;ExcessHet=0.0000;FS=1.991;MQ=60.00;MQRankSum=0;QD=22.78;ReadPosRankSum=1.595;SOR=1.047;VarDP=97 GT:AD:DP:GQ:PL:SB 1:0,46:46:99:1458,0:0,0,27,19 0/1:24,27:51:99:752,0,616:13,11,18,9 +chrX 2418921 . AC A 4319.97 . AC=2;AF=0.667;AN=3;AS_AltDP=103;AS_QD=33.27;BaseQRankSum=1.699;DP=134;ExcessHet=0.0000;FS=6.927;MQ=60.00;MQRankSum=0;QD=33.27;ReadPosRankSum=0.306;SOR=0.860;VarDP=131 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,69:69:99:.:.:3033,0:.:0,0,38,31 0|1:28,34:62:99:0|1:2418921_AC_A:1326,0,1035:2418921:12,16,21,13 +chrX 2418923 . C A 4329 . AC=2;AF=0.667;AN=3;AS_AltDP=103;AS_QD=33.27;BaseQRankSum=1.774;DP=135;ExcessHet=0.0000;FS=6.927;MQ=60.00;MQRankSum=0;QD=33.27;ReadPosRankSum=0.913;SOR=0.860;VarDP=131 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,69:69:99:.:.:3033,0:.:0,0,38,31 0|1:28,34:62:99:0|1:2418921_AC_A:1326,0,1035:2418921:12,16,21,13 +chrX 2419892 . A G 2202 . AC=2;AF=0.667;AN=3;AS_AltDP=80;AS_QD=20.86;BaseQRankSum=-2.973;DP=109;ExcessHet=0.0000;FS=0.832;MQ=52.80;MQRankSum=-1.04;QD=20.86;ReadPosRankSum=0.185;SOR=0.595;VarDP=107 GT:AD:DP:GQ:PL:SB 1:0,57:57:99:1785,0:0,0,28,29 0/1:27,23:50:99:447,0,742:11,16,7,16 +chrX 2420151 . G C 3258 . AC=2;AF=0.667;AN=3;AS_AltDP=105;AS_QD=23.83;BaseQRankSum=0.957;DP=146;ExcessHet=0.0000;FS=3.724;MQ=59.71;MQRankSum=1.0;QD=23.83;ReadPosRankSum=-1.492;SOR=0.798;VarDP=138 GT:AD:DP:GQ:PL:SB 1:0,74:74:99:2482,0:0,0,42,32 0/1:33,31:64:99:806,0,884:15,18,16,15 +chrX 2420811 . T G 2881 . AC=2;AF=0.667;AN=3;AS_AltDP=95;AS_QD=22.57;BaseQRankSum=2.339;DP=131;ExcessHet=0.0000;FS=4.926;MQ=59.96;MQRankSum=0;QD=22.57;ReadPosRankSum=1.117;SOR=0.738;VarDP=129 GT:AD:DP:GQ:PL:SB 1:0,61:61:99:1985,0:0,0,30,31 0/1:34,34:68:99:926,0,754:15,19,22,12 +chrX 2420855 . G A 1207 . AC=2;AF=0.667;AN=3;AS_AltDP=69;AS_QD=9.90;BaseQRankSum=0.626;DP=133;ExcessHet=0.0000;FS=13.104;MQ=60.00;MQRankSum=0;QD=9.90;ReadPosRankSum=0.734;SOR=0.954;VarDP=125 GT:AD:DP:GQ:PL:SB 1:26,35:61:99:307,0:11,15,20,15 0/1:30,34:64:99:930,0,766:12,18,21,13 +chrX 2421062 . T C 1184 . AC=2;AF=0.667;AN=3;AS_AltDP=66;AS_QD=10.20;BaseQRankSum=1.182;DP=124;ExcessHet=0.0000;FS=2.326;MQ=60.00;MQRankSum=0;QD=10.20;ReadPosRankSum=1.448;SOR=0.913;VarDP=119 GT:AD:DP:GQ:PL:SB 1:25,32:57:99:279,0:13,12,20,12 0/1:28,34:62:99:935,0,752:14,14,17,17 +chrX 2421076 . C G 2959 . AC=2;AF=0.667;AN=3;AS_AltDP=95;AS_QD=24.50;BaseQRankSum=-0.626;DP=128;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=24.50;ReadPosRankSum=0.32;SOR=0.618;VarDP=122 GT:AD:DP:GQ:PL:SB 1:0,61:61:99:2050,0:0,0,35,26 0/1:27,34:61:99:939,0,710:16,11,19,15 +chrX 2421650 . A G 3514 . AC=2;AF=0.667;AN=3;AS_AltDP=114;AS_QD=25.87;BaseQRankSum=-1.452;DP=142;ExcessHet=0.0000;FS=0.865;MQ=59.88;MQRankSum=1.319;QD=25.87;ReadPosRankSum=0.715;SOR=0.869;VarDP=137 GT:AD:DP:GQ:PL:SB 1:0,76:76:99:2500,0:0,0,33,43 0/1:23,38:61:99:1044,0,596:11,12,17,21 +chrX 2421769 . C T 3277 . AC=2;AF=0.667;AN=3;AS_AltDP=112;AS_QD=23.13;BaseQRankSum=2.636;DP=148;ExcessHet=0.0000;FS=6.439;MQ=60.00;MQRankSum=0;QD=23.13;ReadPosRankSum=-0.497;SOR=0.453;VarDP=143 GT:AD:DP:GQ:PL:SB 1:0,73:73:99:2245,0:0,0,37,36 0/1:31,39:70:99:1062,0,704:19,12,17,22 +chrX 2421911 . G C 3556 . AC=2;AF=0.667;AN=3;AS_AltDP=112;AS_QD=26.37;BaseQRankSum=1.002;DP=141;ExcessHet=0.0000;FS=3.111;MQ=60.00;MQRankSum=0;QD=26.37;ReadPosRankSum=-1.817;SOR=1.150;VarDP=136 GT:AD:DP:GQ:PL:SB 1:0,72:72:99:2462,0:0,0,45,27 0/1:24,40:64:99:1124,0,567:13,11,26,14 +chrX 2421962 . C T 3357 . AC=2;AF=0.667;AN=3;AS_AltDP=108;AS_QD=24.90;BaseQRankSum=0.731;DP=140;ExcessHet=0.0000;FS=2.872;MQ=60.00;MQRankSum=0;QD=24.90;ReadPosRankSum=2.243;SOR=1.101;VarDP=136 GT:AD:DP:GQ:PL:SB 1:0,74:74:99:2476,0:0,0,46,28 0/1:28,34:62:99:911,0,691:15,13,21,13 +chrX 2422178 . A G 2892 . AC=2;AF=0.667;AN=3;AS_AltDP=95;AS_QD=24.55;BaseQRankSum=0.404;DP=121;ExcessHet=0.0000;FS=0.876;MQ=60.00;MQRankSum=0;QD=24.55;ReadPosRankSum=0.379;SOR=0.547;VarDP=119 GT:AD:DP:GQ:PL:SB 1:0,61:61:99:1985,0:0,0,24,37 0/1:24,34:58:99:937,0,600:9,15,16,18 +chrX 2422380 . A G 2474 . AC=2;AF=0.667;AN=3;AS_AltDP=86;AS_QD=20.69;BaseQRankSum=-2.577;DP=124;ExcessHet=0.0000;FS=11.591;MQ=60.00;MQRankSum=0;QD=20.69;ReadPosRankSum=0.173;SOR=0.282;VarDP=121 GT:AD:DP:GQ:PL:SB 1:0,58:58:99:1880,0:0,0,28,30 0/1:35,28:63:99:624,0,968:24,11,14,14 +chrX 2423085 . A G 224 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=6.51;BaseQRankSum=0.966;DP=97;ExcessHet=0.0000;FS=0.000;MQ=59.88;MQRankSum=-0.782;QD=6.51;ReadPosRankSum=1.0;SOR=0.711;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 1:16,23:39:99:.:254,0:7,9,10,13 0/0:.:58:79:58:0,79,1095 +chrX 2423411 . CA C 2186.97 . AC=2;AF=0.667;AN=3;AS_AltDP=77;AS_QD=23.94;BaseQRankSum=-1.173;DP=104;ExcessHet=0.0000;FS=9.744;MQ=60.00;MQRankSum=0;QD=23.94;ReadPosRankSum=1.767;SOR=0.517;VarDP=93 GT:AD:DP:GQ:PL:SB 1:0,53:53:99:1614,0:0,0,31,22 0/1:16,24:40:99:612,0,365:5,11,11,13 +chrX 2423485 . A G 2614 . AC=2;AF=0.667;AN=3;AS_AltDP=90;AS_QD=22.60;BaseQRankSum=0.886;DP=124;ExcessHet=0.0000;FS=4.257;MQ=60.00;MQRankSum=0;QD=22.60;ReadPosRankSum=0.834;SOR=1.125;VarDP=117 GT:AD:DP:GQ:PL:SB 1:0,62:62:99:1916,0:0,0,41,21 0/1:27,28:55:99:728,0,679:13,14,13,15 +chrX 2423667 . G A 3281 . AC=2;AF=0.667;AN=3;AS_AltDP=106;AS_QD=25.27;BaseQRankSum=0.282;DP=139;ExcessHet=0.0000;FS=5.801;MQ=60.00;MQRankSum=0;QD=25.27;ReadPosRankSum=1.924;SOR=0.290;VarDP=131 GT:AD:DP:GQ:PL:SB 1:0,65:65:99:2174,0:0,0,35,30 0/1:25,41:66:99:1137,0,596:17,8,22,19 +chrX 2423901 . C T 2727 . AC=2;AF=0.667;AN=3;AS_AltDP=82;AS_QD=24.18;BaseQRankSum=-0.218;DP=118;ExcessHet=0.0000;FS=8.577;MQ=60.00;MQRankSum=0;QD=24.18;ReadPosRankSum=-1.316;SOR=1.312;VarDP=114 GT:AD:DP:GQ:PL:SB 1:0,50:50:99:1932,0:0,0,20,30 0/1:32,32:64:99:825,0,819:17,15,10,22 +chrX 2424521 . T C 2915 . AC=2;AF=0.667;AN=3;AS_AltDP=97;AS_QD=23.37;BaseQRankSum=-1.162;DP=129;ExcessHet=0.0000;FS=5.346;MQ=60.00;MQRankSum=0;QD=23.37;ReadPosRankSum=-0.722;SOR=1.117;VarDP=126 GT:AD:DP:GQ:PL:SB 1:0,53:53:99:1789,0:0,0,22,31 0/1:29,44:73:99:1156,0,735:15,14,17,27 +chrX 2424815 . G A 2677 . AC=2;AF=0.667;AN=3;AS_AltDP=87;AS_QD=22.75;BaseQRankSum=0.321;DP=124;ExcessHet=0.0000;FS=1.647;MQ=60.00;MQRankSum=0;QD=22.75;ReadPosRankSum=0.972;SOR=0.538;VarDP=119 GT:AD:DP:GQ:PL:SB 1:0,57:57:99:1881,0:0,0,30,27 0/1:32,30:62:99:826,0,886:18,14,15,15 +chrX 2425142 . G GA 1590.97 . AC=2;AF=0.667;AN=3;AS_AltDP=70;AS_QD=16.98;BaseQRankSum=-0.889;DP=119;ExcessHet=0.0000;FS=0.000;MQ=59.85;MQRankSum=1.127;QD=16.98;ReadPosRankSum=-0.264;SOR=0.662;VarDP=96 GT:AD:DP:GQ:PL:SB 1:0,39:39:99:995,0:0,0,17,22 0/1:26,31:57:99:635,0,490:12,14,16,15 +chrX 2425172 . C T 30 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=1.28;BaseQRankSum=0.49;DP=108;ExcessHet=0.0000;FS=0.000;MQ=59.91;MQRankSum=-0.936;QD=1.28;ReadPosRankSum=-0.277;SOR=0.616;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 1:23,24:47:60:.:60,0:11,12,12,12 0/0:.:55:99:55:0,108,1390 +chrX 2425413 . T A 3325 . AC=2;AF=0.667;AN=3;AS_AltDP=104;AS_QD=26.42;BaseQRankSum=0.429;DP=131;ExcessHet=0.0000;FS=4.428;MQ=60.00;MQRankSum=0;QD=26.42;ReadPosRankSum=-0.267;SOR=0.421;VarDP=127 GT:AD:DP:GQ:PL:SB 1:0,71:71:99:2396,0:0,0,35,36 0/1:23,33:56:99:959,0,596:14,9,16,17 +chrX 2425572 . A G 975 . AC=2;AF=0.667;AN=3;AS_AltDP=69;AS_QD=8.31;BaseQRankSum=-0.125;DP=127;ExcessHet=0.0000;FS=5.798;MQ=60.00;MQRankSum=0;QD=8.31;ReadPosRankSum=0.498;SOR=0.330;VarDP=121 GT:AD:DP:GQ:PL:SB 1:31,39:70:99:190,0:12,19,19,20 0/1:21,30:51:99:815,0,537:6,15,13,17 +chrX 2428453 . G A 724 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=6.61;BaseQRankSum=0.656;DP=120;ExcessHet=0.0000;FS=1.496;MQ=59.40;MQRankSum=-1.127;QD=6.61;ReadPosRankSum=0.25;SOR=0.864;VarDP=114 GT:AD:DP:GQ:PL:SB 1:25,28:53:94:94,0:13,12,18,10 0/1:35,26:61:99:660,0,889:19,16,13,13 +chrX 2429047 . G A 737 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=7.10;BaseQRankSum=1.018;DP=113;ExcessHet=0.0000;FS=0.719;MQ=59.90;MQRankSum=0;QD=7.10;ReadPosRankSum=0.312;SOR=0.772;VarDP=108 GT:AD:DP:GQ:PL:SB 1:24,28:52:99:120,0:13,11,12,16 0/1:29,27:56:99:647,0,671:13,16,17,10 +chrX 2429171 . G A 504 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=10.27;BaseQRankSum=-1.032;DP=110;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=10.27;ReadPosRankSum=1.226;SOR=0.719;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:58:55:55:0,55 0/1:29,23:52:99:.:534,0,760:15,14,11,12 +chrX 2429205 . T A 719 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=14.98;BaseQRankSum=0.564;DP=106;ExcessHet=0.0000;FS=5.783;MQ=60.00;MQRankSum=0;QD=14.98;ReadPosRankSum=0.46;SOR=0.510;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:58:55:55:0,55 0/1:22,28:50:99:.:749,0,524:14,8,13,15 +chrX 2429451 . CT C 500.97 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=9.64;BaseQRankSum=1.331;DP=123;ExcessHet=0.0000;FS=0.000;MQ=59.64;MQRankSum=0;QD=9.64;ReadPosRankSum=-0.484;SOR=0.706;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:58:55:55:0,55 0/1:29,27:56:99:.:540,0,577:15,14,13,14 +chrX 2429478 . T C 766 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=13.05;BaseQRankSum=0.619;DP=117;ExcessHet=0.0000;FS=3.524;MQ=60.00;MQRankSum=0;QD=13.05;ReadPosRankSum=-0.527;SOR=0.468;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:58:55:55:0,55 0/1:30,31:61:99:.:796,0,741:12,18,16,15 +chrX 2429626 . ATT A 1017.97 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=22.02;BaseQRankSum=2.696;DP=106;ExcessHet=0.0000;FS=6.457;MQ=60.00;MQRankSum=0;QD=22.02;ReadPosRankSum=-0.543;SOR=0.169;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:58:55:55:0,55 0/1:18,30:48:99:.:1057,0,554:5,13,15,15 +chrX 2430195 . C T 648 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=12.56;BaseQRankSum=1.593;DP=112;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=12.56;ReadPosRankSum=0.303;SOR=0.735;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:58:55:55:0,55 0/1:28,26:54:99:.:678,0,672:18,10,17,9 +chrX 2430258 . C CA 283.97 . AC=2;AF=0.667;AN=3;AS_AltDP=42;AS_QD=4.31;BaseQRankSum=0.686;DP=125;ExcessHet=0.0000;FS=4.501;MQ=59.55;MQRankSum=0.168;QD=4.31;ReadPosRankSum=0.057;SOR=0.694;VarDP=75 GT:AD:DP:GQ:PL:SB 1:19,24:43:65:65,0:11,8,9,15 0/1:14,18:32:99:258,0,231:8,6,10,8 +chrX 2430729 . T C 841 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=15.28;BaseQRankSum=-2.405;DP=125;ExcessHet=0.0000;FS=7.618;MQ=60.00;MQRankSum=0;QD=15.28;ReadPosRankSum=0.065;SOR=1.579;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,115 0/1:23,34:57:99:.:871,0,604:11,12,23,11 +chrX 2431326 . C A,CAA 453 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=1,17;AS_QD=0.00,16.10;BaseQRankSum=-1.513;DP=106;ExcessHet=0.0000;FS=0.000;MQ=59.41;MQRankSum=0;QD=15.58;ReadPosRankSum=0.881;SOR=0.509;VarDP=31 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,115,115 0/2:13,1,17:31:99:.:483,518,1138,0,361,356:8,5,10,8 +chrX 2431344 . CA C 507.97 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=13.68;BaseQRankSum=-1.472;DP=111;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.68;ReadPosRankSum=0.748;SOR=0.627;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,115 0/1:18,22:40:99:.:547,0,417:11,7,13,9 +chrX 2431802 . G A 1050 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=10.29;BaseQRankSum=1.866;DP=108;ExcessHet=0.0000;FS=4.822;MQ=60.00;MQRankSum=0;QD=10.29;ReadPosRankSum=0;SOR=0.379;VarDP=105 GT:AD:DP:GQ:PL:SB 1:21,32:53:99:397,0:14,7,19,13 0/1:27,25:52:99:683,0,732:16,11,11,14 +chrX 2435461 . GA G 393.97 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=8.66;BaseQRankSum=1.869;DP=120;ExcessHet=0.0000;FS=4.127;MQ=60.00;MQRankSum=0;QD=8.66;ReadPosRankSum=1.404;SOR=1.382;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:99:66:0,326 0/1:27,23:50:99:.:433,0,505:15,12,16,7 +chrX 2435698 . A G 796 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=12.33;BaseQRankSum=-0.585;DP=137;ExcessHet=0.0000;FS=0.000;MQ=59.60;MQRankSum=0.958;QD=12.33;ReadPosRankSum=-0.447;SOR=0.773;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:99:66:0,326 0/1:36,31:67:99:.:826,0,1034:17,19,14,17 +chrX 2436003 . A G 2553 . AC=2;AF=0.667;AN=3;AS_AltDP=82;AS_QD=23.48;BaseQRankSum=0.948;DP=115;ExcessHet=0.0000;FS=8.759;MQ=59.93;MQRankSum=0;QD=23.48;ReadPosRankSum=0.505;SOR=0.722;VarDP=110 GT:AD:DP:GQ:PL:SB 1:0,55:55:99:1850,0:0,0,25,30 0/1:28,27:55:99:733,0,738:17,11,11,16 +chrX 2436209 . C T 471 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=12.22;BaseQRankSum=-0.998;DP=109;ExcessHet=0.0000;FS=9.282;MQ=59.40;MQRankSum=1.025;QD=12.22;ReadPosRankSum=-0.457;SOR=1.645;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,1542 0/1:21,20:41:99:.:501,0,587:12,9,6,14 +chrX 2436275 . G A 464 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=11.23;BaseQRankSum=0.875;DP=112;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=11.23;ReadPosRankSum=0.438;SOR=0.813;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,1542 0/1:25,19:44:99:.:494,0,658:19,6,15,4 +chrX 2436461 . A ATATTAT,ATATTATTAT 555.97 . AC=2,0;AF=0.667,0.00;AN=3;AS_AltDP=29,0;AS_QD=9.30,1.46;BaseQRankSum=0.052;DP=107;ExcessHet=0.0000;FS=3.454;MQ=60.00;MQRankSum=0;QD=9.30;ReadPosRankSum=-2.029;SOR=0.720;VarDP=64 GT:AD:DP:GQ:PL:SB 1:22,19,0:41:99:131,0,828:14,8,8,11 0/1:13,10,0:23:99:464,0,511,413,542,952:6,7,5,5 +chrX 2436497 . TTAC T 426.97 . AC=1;AF=0.500;AN=2;AS_AltDP=12;AS_QD=18.64;BaseQRankSum=1.041;DP=97;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=18.64;ReadPosRankSum=-0.681;SOR=0.859;VarDP=25 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB .:.:56:0:56:.:.:0,0 0|1:13,12:25:99:.:0|1:2436497_TTAC_T:466,0,474:2436497:6,7,5,7 +chrX 2436500 . C T,* 2412 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=38,12;AS_QD=30.45,0.00;BaseQRankSum=3.479;DP=97;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=47.88;ReadPosRankSum=-1.436;SOR=0.336;VarDP=51 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,28,0:28:99:.:.:1092,0,1086:.:0,0,8,11 1|2:1,10,12:23:99:1|0:2436497_TTAC_T:1350,534,511,443,0,464:2436497:0,1,10,12 +chrX 2436703 . T C 2358 . AC=2;AF=0.667;AN=3;AS_AltDP=77;AS_QD=23.18;BaseQRankSum=-0.295;DP=105;ExcessHet=0.0000;FS=5.792;MQ=60.00;MQRankSum=0;QD=23.18;ReadPosRankSum=-0.399;SOR=0.459;VarDP=103 GT:AD:DP:GQ:PL:SB 1:0,57:57:99:1866,0:0,0,28,29 0/1:26,20:46:99:522,0,746:10,16,12,8 +chrX 2437135 . T C 3074 . AC=2;AF=0.667;AN=3;AS_AltDP=100;AS_QD=24.06;BaseQRankSum=1.448;DP=131;ExcessHet=0.0000;FS=2.757;MQ=59.57;MQRankSum=-1.084;QD=24.06;ReadPosRankSum=-0.212;SOR=0.447;VarDP=129 GT:AD:DP:GQ:PL:SB 1:0,77:77:99:2471,0:0,0,39,38 0/1:29,23:52:99:633,0,802:17,12,12,11 +chrX 2437289 . A G 3682 . AC=3;AF=1.00;AN=3;AS_AltDP=118;AS_QD=30.93;BaseQRankSum=3.041;DP=124;ExcessHet=0.0000;FS=0.000;MQ=59.79;MQRankSum=-0.199;QD=30.93;ReadPosRankSum=-0.618;SOR=0.955;VarDP=120 GT:AD:DP:GQ:PL:SB 1:2,58:60:99:1877,0:1,1,24,34 1/1:0,60:60:99:1835,179,0:0,0,28,32 +chrX 2437619 . AG A 3360.97 . AC=3;AF=1.00;AN=3;AS_AltDP=92;AS_QD=28.74;DP=96;ExcessHet=0.0000;FS=0.000;MQ=59.91;QD=36.96;SOR=0.782;VarDP=92 GT:AD:DP:GQ:PL:SB 1:0,45:45:99:1646,0:0,0,21,24 1/1:0,47:47:99:1754,141,0:0,0,23,24 +chrX 2437696 . AGAGTGTGTGTGTGTGTGT A,AGTGTGT 420.97 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=0,18;AS_QD=0.00,11.79;BaseQRankSum=1.078;DP=107;ExcessHet=0.0000;FS=13.081;MQ=59.72;MQRankSum=1.363;QD=11.79;ReadPosRankSum=0.028;SOR=2.261;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:43:99:43:0,1256,1256 0/2:21,0,18:39:99:.:460,604,1789,0,648,952:12,9,4,14 +chrX 2437698 . AGTGTGTGTGTGTGTGT A,*,AGTGTGT 3316.97 . AC=2,1,0;AF=0.667,0.333,0.00;AN=3;AS_AltDP=50,18,0;AS_QD=30.66,0.00,30.64;BaseQRankSum=-0.311;DP=115;ExcessHet=0.0000;FS=4.239;MQ=59.37;MQRankSum=-0.118;QD=48.64;ReadPosRankSum=-1.597;SOR=1.136;VarDP=69 GT:AD:DP:GQ:PL:SB 1:1,37,0,0:38:99:1606,0,1637,1637:1,0,15,22 1/2:0,13,18,0:31:99:1750,952,1202,414,0,473,1406,782,420,1522:0,0,10,21 +chrX 2438008 . G GAA 2890.97 . AC=3;AF=1.00;AN=3;AS_AltDP=82;AS_QD=29.67;DP=95;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=35.73;SOR=0.846;VarDP=82 GT:AD:DP:GQ:PL:SB 1:0,39:39:99:1395,0:0,0,26,13 1/1:0,43:43:99:1535,129,0:0,0,18,25 +chrX 2438178 . GA G 1973.97 . AC=3;AF=1.00;AN=3;AS_AltDP=84;AS_QD=23.68;DP=122;ExcessHet=0.0000;FS=0.000;MQ=59.68;MQRankSum=0;QD=23.68;SOR=0.581;VarDP=85 GT:AD:DP:GQ:PL:SB 1:1,37:38:99:868,0:0,1,16,21 1/1:0,47:47:99:1145,141,0:0,0,14,33 +chrX 2438306 . T TACACACAC,TACACACACAC,C 2598 . AC=1,1,0;AF=0.333,0.333,0.00;AN=3;AS_AltDP=44,16,0;AS_QD=27.47,16.79,1.23;BaseQRankSum=-0.474;DP=106;ExcessHet=0.0000;FS=8.086;MQ=60.00;MQRankSum=0;QD=30.56;ReadPosRankSum=0.233;SOR=0.202;VarDP=86 GT:AD:DP:GQ:PL:SB 1:0,44,0,0:44:99:1923,0,1924,1924:0,0,22,22 0/2:26,0,16,0:42:99:705,808,2088,0,1112,1025,673,1986,1104,2173:18,8,8,8 +chrX 2438446 . T G 3792 . AC=3;AF=1.00;AN=3;AS_AltDP=122;AS_QD=31.33;DP=128;ExcessHet=0.0000;FS=0.000;MQ=59.80;QD=31.33;SOR=0.906;VarDP=122 GT:AD:DP:GQ:PL:SB 1:0,65:65:99:2023,0:0,0,37,28 1/1:0,57:57:99:1799,170,0:0,0,30,27 +chrX 2438672 . T TAA,TA 2829.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=78,17;AS_QD=33.12,33.01;DP=123;ExcessHet=0.0000;FS=0.000;MQ=59.63;QD=30.20;SOR=0.999;VarDP=95 GT:AD:DP:GQ:PL:SB 1:0,52,0:52:99:1697,0,1698:0,0,37,15 1/2:0,26,17:43:99:1172,370,286,590,0,469:0,0,17,26 +chrX 2438973 . T C 3353 . AC=3;AF=1.00;AN=3;AS_AltDP=104;AS_QD=32.53;DP=112;ExcessHet=0.0000;FS=0.000;MQ=59.77;QD=32.53;SOR=0.946;VarDP=104 GT:AD:DP:GQ:PL:SB 1:0,56:56:99:1775,0:0,0,27,29 1/1:0,48:48:99:1608,144,0:0,0,19,29 +chrX 2439516 . G A 3526 . AC=3;AF=1.00;AN=3;AS_AltDP=115;AS_QD=30.92;DP=121;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.92;SOR=0.984;VarDP=115 GT:AD:DP:GQ:PL:SB 1:0,61:61:99:1862,0:0,0,23,38 1/1:0,54:54:99:1694,161,0:0,0,27,27 +chrX 2439878 . G T 2836 . AC=2;AF=0.667;AN=3;AS_AltDP=95;AS_QD=22.75;BaseQRankSum=-1.093;DP=128;ExcessHet=0.0000;FS=1.670;MQ=60.00;MQRankSum=0;QD=22.75;ReadPosRankSum=0.415;SOR=0.798;VarDP=126 GT:AD:DP:GQ:PL:SB 1:0,64:64:99:2079,0:0,0,33,31 0/1:31,31:62:99:787,0,848:16,15,11,20 +chrX 2440099 . T A 3819 . AC=3;AF=1.00;AN=3;AS_AltDP=117;AS_QD=32.90;DP=118;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.90;SOR=0.978;VarDP=117 GT:AD:DP:GQ:PL:SB 1:0,61:61:99:2006,0:0,0,21,40 1/1:0,56:56:99:1843,168,0:0,0,30,26 +chrX 2442048 . T C 4648 . AC=3;AF=1.00;AN=3;AS_AltDP=134;AS_QD=34.65;BaseQRankSum=-0.566;DP=141;ExcessHet=0.0000;FS=0.000;MQ=59.97;MQRankSum=0;QD=34.65;ReadPosRankSum=-0.41;SOR=0.289;VarDP=135 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,75:76:99:.:.:2356,0:.:0,1,33,42 1|1:0,59:59:99:0|1:2442048_T_C:2322,177,0:2442048:0,0,29,30 +chrX 2442062 . A G 1054 . AC=1;AF=0.333;AN=3;AS_AltDP=39;AS_QD=16.94;BaseQRankSum=-0.274;DP=126;ExcessHet=0.0000;FS=0.978;MQ=60.00;MQRankSum=0;QD=16.94;ReadPosRankSum=-0.303;SOR=0.790;VarDP=64 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:60:99:60:.:.:0,1732 0|1:25,39:64:99:.:0|1:2442048_T_C:1084,0,606:2442048:12,13,21,18 +chrX 2442260 . T C 3506 . AC=3;AF=1.00;AN=3;AS_AltDP=110;AS_QD=32.15;DP=113;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.15;SOR=1.445;VarDP=110 GT:AD:DP:GQ:PL:SB 1:0,53:53:99:1722,0:0,0,36,17 1/1:0,57:57:99:1814,170,0:0,0,35,22 +chrX 2442700 . A G 3269 . AC=3;AF=1.00;AN=3;AS_AltDP=102;AS_QD=32.34;DP=107;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.34;SOR=1.157;VarDP=102 GT:AD:DP:GQ:PL:SB 1:0,51:51:99:1657,0:0,0,19,32 1/1:0,51:51:99:1642,152,0:0,0,22,29 +chrX 2443425 . G C 709 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=12.32;BaseQRankSum=2.215;DP=118;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=12.32;ReadPosRankSum=1.516;SOR=0.705;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:99:56:0,1033 0/1:33,27:60:99:.:739,0,850:16,17,13,14 +chrX 2444010 . G A,GA 268 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=7,16;AS_QD=2.69,8.51;BaseQRankSum=-0.539;DP=113;ExcessHet=0.0000;FS=1.210;MQ=58.94;MQRankSum=-1.86;QD=7.10;ReadPosRankSum=-2.086;SOR=0.895;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:99:56:0,1033,1033 0/2:19,7,16:42:99:.:298,228,1100,0,311,336:10,9,10,13 +chrX 2444458 . T C 3521 . AC=3;AF=1.00;AN=3;AS_AltDP=111;AS_QD=31.99;DP=115;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.99;SOR=0.825;VarDP=111 GT:AD:DP:GQ:PL:SB 1:0,64:64:99:2094,0:0,0,34,30 1/1:0,47:47:99:1457,140,0:0,0,18,29 +chrX 2445487 . T A 1634 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=30.25;BaseQRankSum=-0.51;DP=123;ExcessHet=0.0000;FS=3.602;MQ=60.00;MQRankSum=0;QD=30.25;ReadPosRankSum=0.221;SOR=0.707;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:99:66:0,252 1/1:1,54:55:99:.:1664,129,0:0,1,31,23 +chrX 2445560 . C T 2262 . AC=2;AF=0.667;AN=3;AS_AltDP=73;AS_QD=30.97;BaseQRankSum=2.234;DP=142;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=30.97;ReadPosRankSum=-1.241;SOR=0.340;VarDP=74 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:99:66:0,252 1/1:1,73:74:99:.:2292,211,0:1,0,41,32 +chrX 2445874 . T G 799 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=15.07;BaseQRankSum=-0.032;DP=126;ExcessHet=0.0000;FS=1.142;MQ=59.31;MQRankSum=-1.184;QD=15.07;ReadPosRankSum=2.083;SOR=0.508;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:99:66:0,252 0/1:23,32:55:99:.:829,0,550:6,17,10,22 +chrX 2445915 . C A 968 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=15.84;BaseQRankSum=-0.867;DP=131;ExcessHet=0.0000;FS=7.262;MQ=59.36;MQRankSum=0.299;QD=15.84;ReadPosRankSum=-0.419;SOR=0.197;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:99:66:0,252 0/1:26,37:63:99:.:998,0,652:7,19,17,20 +chrX 2446094 . G C 548 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=11.80;BaseQRankSum=-1.704;DP=116;ExcessHet=0.0000;FS=10.571;MQ=60.00;MQRankSum=0;QD=11.80;ReadPosRankSum=-0.99;SOR=0.746;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:99:66:0,252 0/1:25,24:49:99:.:578,0,698:17,8,10,14 +chrX 2446339 . G A 731 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=12.90;BaseQRankSum=0.546;DP=125;ExcessHet=0.0000;FS=1.053;MQ=60.00;MQRankSum=0;QD=12.90;ReadPosRankSum=-1.236;SOR=0.951;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:99:66:0,252 0/1:30,29:59:99:.:761,0,858:19,11,20,9 +chrX 2446475 . G A 649 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=12.35;BaseQRankSum=0.681;DP=123;ExcessHet=0.0000;FS=2.268;MQ=59.70;MQRankSum=-0.982;QD=12.35;ReadPosRankSum=-0.093;SOR=0.550;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:99:66:0,252 0/1:28,27:55:99:.:679,0,714:12,16,14,13 +chrX 2447559 . C T 2143 . AC=1;AF=0.333;AN=3;AS_AltDP=66;AS_QD=32.92;DP=128;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.92;SOR=0.886;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,66:66:99:.:2173,0:0,0,30,36 0/0:.:60:23:59:0,23,1216 +chrX 2447683 . G A 1401 . AC=1;AF=0.333;AN=3;AS_AltDP=43;AS_QD=33.28;DP=103;ExcessHet=0.0000;FS=0.000;MQ=54.24;QD=33.28;SOR=1.455;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,43:43:99:.:1431,0:0,0,15,28 0/0:.:60:23:59:0,23,1216 +chrX 2447728 . A G 717 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=25.86;DP=81;ExcessHet=0.0000;FS=0.000;MQ=48.54;QD=35.57;SOR=1.828;VarDP=21 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,21:21:99:.:747,0:0,0,6,15 0/0:.:60:23:59:0,23,1216 +chrX 2447749 . A G 438 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=27.92;DP=73;ExcessHet=0.0000;FS=0.000;MQ=41.92;QD=36.00;SOR=2.147;VarDP=13 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,13:13:99:.:468,0:0,0,3,10 0/0:.:60:23:59:0,23,1216 +chrX 2447769 . A G 799 . AC=2;AF=0.667;AN=3;AS_AltDP=27;AS_QD=18.02;BaseQRankSum=2.222;DP=47;ExcessHet=0.0000;FS=4.324;MQ=57.77;MQRankSum=-0.901;QD=18.02;ReadPosRankSum=-1.125;SOR=0.944;VarDP=46 GT:AD:DP:GQ:PL:SB 1:0,6:6:99:229,0:0,0,2,4 0/1:19,21:40:99:600,0,490:11,8,9,12 +chrX 2447787 . A C 55 . AC=1;AF=0.333;AN=3;AS_AltDP=2;AS_QD=34.98;DP=43;ExcessHet=0.0000;FS=0.000;MQ=40.00;QD=42.50;SOR=2.303;VarDP=2 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,2:2:85:.:85,0:0,0,0,2 0/0:.:41:71:41:0,71,1191 +chrX 2447788 . T A 55 . AC=1;AF=0.333;AN=3;AS_AltDP=2;AS_QD=29.97;DP=43;ExcessHet=0.0000;FS=0.000;MQ=40.00;QD=42.50;SOR=2.303;VarDP=2 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,2:2:85:.:85,0:0,0,0,2 0/0:.:41:71:41:0,71,1191 +chrX 2447802 . G A 909 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=18.41;BaseQRankSum=2.864;DP=52;ExcessHet=0.0000;FS=1.069;MQ=58.68;MQRankSum=-2.962;QD=18.41;ReadPosRankSum=0.052;SOR=0.786;VarDP=51 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:3:35:1:.:.:0,35 0|1:25,26:51:99:.:0|1:2447802_G_A:939,0,879:2447802:13,12,12,14 +chrX 2447822 . C T 1051 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=19.65;BaseQRankSum=1.13;DP=57;ExcessHet=0.0000;FS=1.028;MQ=57.25;MQRankSum=-3.887;QD=19.65;ReadPosRankSum=-0.691;SOR=0.892;VarDP=55 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:3:35:1:.:.:0,35 0|1:24,31:55:99:.:0|1:2447802_G_A:1081,0,842:2447802:12,12,17,14 +chrX 2447835 . A C 251 . AC=1;AF=0.333;AN=3;AS_AltDP=9;AS_QD=31.22;DP=63;ExcessHet=0.0000;FS=0.000;MQ=32.85;QD=31.22;SOR=0.892;VarDP=9 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,9:9:99:.:281,0:0,0,5,4 0/0:.:53:99:53:0,120,1800 +chrX 2447871 . CTTCA C 1896.97 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=28.47;BaseQRankSum=0.771;DP=69;ExcessHet=0.0000;FS=3.630;MQ=53.73;MQRankSum=-4.223;QD=28.47;ReadPosRankSum=0.15;SOR=0.741;VarDP=68 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,15:15:99:.:.:655,0:.:0,0,10,5 0|1:21,32:53:99:0|1:2447871_CTTCA_C:1281,0,785:2447871:9,12,16,16 +chrX 2447878 . A G 1905 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=28.46;BaseQRankSum=0.988;DP=69;ExcessHet=0.0000;FS=3.630;MQ=53.73;MQRankSum=-4.223;QD=28.46;ReadPosRankSum=0.555;SOR=0.741;VarDP=68 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,15:15:99:.:.:655,0:.:0,0,10,5 0|1:21,32:53:99:0|1:2447871_CTTCA_C:1280,0,785:2447871:9,12,16,16 +chrX 2447887 . T G 1209 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=23.83;BaseQRankSum=-0.253;DP=78;ExcessHet=0.0000;FS=2.350;MQ=56.86;MQRankSum=-4.306;QD=23.83;ReadPosRankSum=1.642;SOR=0.543;VarDP=52 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:25:99:25:.:.:0,530 0|1:21,31:52:99:.:0|1:2447871_CTTCA_C:1239,0,778:2447871:9,12,16,15 +chrX 2447930 . T C 2314 . AC=2;AF=0.667;AN=3;AS_AltDP=67;AS_QD=24.16;BaseQRankSum=-0.031;DP=97;ExcessHet=0.0000;FS=0.836;MQ=55.08;MQRankSum=-0.984;QD=24.16;ReadPosRankSum=1.736;SOR=0.533;VarDP=97 GT:AD:DP:GQ:PL:SB 1:1,32:33:99:1395,0:1,0,19,13 0/1:29,35:64:99:949,0,766:17,12,18,17 +chrX 2447935 . C G 1365 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=29.13;BaseQRankSum=-0.211;DP=90;ExcessHet=0.0000;FS=0.000;MQ=49.63;MQRankSum=-0.984;QD=42.27;ReadPosRankSum=1.734;SOR=0.412;VarDP=33 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,32:33:99:.:1395,0:1,0,19,13 0/0:.:57:99:57:0,113,1594 +chrX 2447945 . A T 1500 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=32.80;BaseQRankSum=-0.121;DP=94;ExcessHet=0.0000;FS=0.000;MQ=51.38;MQRankSum=-0.875;QD=42.50;ReadPosRankSum=1.397;SOR=0.430;VarDP=36 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,35:36:99:.:1530,0:1,0,21,14 0/0:.:57:99:57:0,113,1594 +chrX 2447946 . A G 1500 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=30.34;BaseQRankSum=-0.201;DP=95;ExcessHet=0.0000;FS=0.000;MQ=51.63;MQRankSum=-0.875;QD=42.50;ReadPosRankSum=1.348;SOR=0.430;VarDP=36 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,35:36:99:.:1530,0:1,0,21,14 0/0:.:57:99:57:0,113,1594 +chrX 2448057 . G A 1213 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=21.43;BaseQRankSum=1.514;DP=96;ExcessHet=0.0000;FS=1.012;MQ=59.98;MQRankSum=-0.867;QD=21.43;ReadPosRankSum=0.756;SOR=0.701;VarDP=58 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:38:60:37:.:.:0,60 0|1:26,32:58:99:.:0|1:2448057_G_A:1243,0,943:2448057:14,12,15,17 +chrX 2448062 . G A 1154 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=21.53;BaseQRankSum=1.435;DP=94;ExcessHet=0.0000;FS=1.029;MQ=59.98;MQRankSum=-0.876;QD=21.53;ReadPosRankSum=1.15;SOR=0.764;VarDP=55 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:38:60:37:.:.:0,60 0|1:25,30:55:99:.:0|1:2448057_G_A:1184,0,928:2448057:13,12,14,16 +chrX 2448073 . T G 1093 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=32.09;DP=92;ExcessHet=0.0000;FS=0.000;MQ=53.91;QD=32.09;SOR=1.148;VarDP=35 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,35:35:99:.:1123,0:0,0,21,14 0/0:.:56:99:56:0,110,1594 +chrX 2448118 . A G 846 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=28.26;BaseQRankSum=-0.617;DP=87;ExcessHet=0.0000;FS=4.500;MQ=51.02;MQRankSum=-0.797;QD=28.26;ReadPosRankSum=0.84;SOR=1.360;VarDP=31 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,30:31:99:.:876,0:0,1,20,10 0/0:.:56:99:56:0,110,1594 +chrX 2448155 . T C 1509 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=32.20;BaseQRankSum=-0.406;DP=95;ExcessHet=0.0000;FS=5.798;MQ=52.17;MQRankSum=-0.918;QD=40.50;ReadPosRankSum=-1.643;SOR=2.159;VarDP=38 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,37:38:99:.:1539,0:0,1,28,9 0/0:.:56:99:56:0,110,1594 +chrX 2448163 . T C 1549 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=30.16;BaseQRankSum=4.185;DP=95;ExcessHet=0.0000;FS=5.798;MQ=52.03;MQRankSum=-0.958;QD=41.55;ReadPosRankSum=-1.635;SOR=2.159;VarDP=38 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,37:38:99:.:1579,0:0,1,28,9 0/0:.:56:99:56:0,110,1594 +chrX 2448167 . A ATC 1400.97 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=33.88;BaseQRankSum=0;DP=91;ExcessHet=0.0000;FS=6.284;MQ=51.04;MQRankSum=-1.052;QD=42.35;ReadPosRankSum=-1.63;SOR=2.455;VarDP=34 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,33:34:99:.:1440,0:0,1,26,7 0/0:.:56:99:56:0,110,1594 +chrX 2448172 . CAT C 1344.97 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=28.21;BaseQRankSum=-0.129;DP=92;ExcessHet=0.0000;FS=6.154;MQ=51.78;MQRankSum=-1.033;QD=41.94;ReadPosRankSum=-1.41;SOR=2.381;VarDP=33 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,32:33:99:.:1384,0:0,1,25,7 0/0:.:56:99:56:0,110,1594 +chrX 2448372 . C G 4541 . AC=2;AF=0.667;AN=3;AS_AltDP=108;AS_QD=34.63;BaseQRankSum=2.176;DP=136;ExcessHet=0.0000;FS=1.832;MQ=58.91;MQRankSum=-1.531;QD=34.63;ReadPosRankSum=0.096;SOR=0.936;VarDP=132 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,77:77:99:.:.:3393,0:.:0,0,34,43 0|1:24,31:55:99:0|1:2448372_C_G:1178,0,873:2448372:12,12,14,17 +chrX 2448376 . A G 3397 . AC=1;AF=0.333;AN=3;AS_AltDP=78;AS_QD=26.39;DP=136;ExcessHet=0.0000;FS=0.000;MQ=58.79;QD=43.94;SOR=0.914;VarDP=78 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,78:78:99:.:3427,0:0,0,35,43 0/0:.:54:99:54:0,120,1800 +chrX 2448394 . A T 3588 . AC=2;AF=0.667;AN=3;AS_AltDP=106;AS_QD=27.20;BaseQRankSum=0.55;DP=135;ExcessHet=0.0000;FS=4.072;MQ=58.04;MQRankSum=-2.635;QD=27.20;ReadPosRankSum=1.553;SOR=0.747;VarDP=133 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,76:76:99:.:.:2460,0:.:0,0,33,43 0|1:27,30:57:99:0|1:2448372_C_G:1158,0,1002:2448372:15,12,15,15 +chrX 2448414 . C G 3476 . AC=2;AF=0.667;AN=3;AS_AltDP=104;AS_QD=27.83;BaseQRankSum=0.171;DP=131;ExcessHet=0.0000;FS=10.068;MQ=56.50;MQRankSum=-2.845;QD=27.83;ReadPosRankSum=0.678;SOR=0.787;VarDP=126 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,72:72:99:.:.:2299,0:.:0,0,30,42 0|1:22,32:54:99:0|1:2448372_C_G:1207,0,816:2448372:14,8,14,18 +chrX 2448467 . A G 3148 . AC=2;AF=0.667;AN=3;AS_AltDP=75;AS_QD=33.10;BaseQRankSum=-0.809;DP=99;ExcessHet=0.0000;FS=13.313;MQ=54.29;MQRankSum=-3.761;QD=33.10;ReadPosRankSum=1.046;SOR=0.583;VarDP=96 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,52:52:99:.:.:2288,0:.:0,0,22,30 0|1:21,23:44:99:0|1:2448467_A_G:890,0,811:2448467:15,6,11,12 +chrX 2448472 . G C 3023 . AC=2;AF=0.667;AN=3;AS_AltDP=71;AS_QD=33.18;BaseQRankSum=-0.573;DP=93;ExcessHet=0.0000;FS=15.971;MQ=54.14;MQRankSum=-3.858;QD=33.18;ReadPosRankSum=0.729;SOR=0.707;VarDP=92 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,49:49:99:.:.:2195,0:.:0,0,20,29 0|1:21,22:43:99:0|1:2448467_A_G:858,0,814:2448467:15,6,10,12 +chrX 2448506 . T C 2267 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=30.63;BaseQRankSum=-1.03;DP=76;ExcessHet=0.0000;FS=24.555;MQ=51.25;MQRankSum=-4.392;QD=30.63;ReadPosRankSum=-1.433;SOR=0.821;VarDP=75 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,38:38:99:.:.:1664,0:.:0,0,16,22 0|1:20,17:37:99:0|1:2448506_T_C:633,0,778:2448506:16,4,6,11 +chrX 2448513 . AAG A 2281.97 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=30.95;BaseQRankSum=1.284;DP=75;ExcessHet=0.0000;FS=19.666;MQ=51.40;MQRankSum=-4.815;QD=30.95;ReadPosRankSum=-2.101;SOR=0.643;VarDP=75 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,39:39:99:.:.:1754,0:.:0,0,17,22 0|1:21,15:36:99:0|1:2448506_T_C:567,0,826:2448506:16,5,6,9 +chrX 2448516 . G GAA 2284.97 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=31.41;BaseQRankSum=-0.166;DP=74;ExcessHet=0.0000;FS=21.076;MQ=51.27;MQRankSum=-4.722;QD=31.41;ReadPosRankSum=-2.137;SOR=0.623;VarDP=74 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,39:39:99:.:.:1754,0:.:0,0,17,22 0|1:20,15:35:99:0|1:2448506_T_C:570,0,795:2448506:16,4,6,9 +chrX 2448523 . G A 2138 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=30.97;BaseQRankSum=0.915;DP=70;ExcessHet=0.0000;FS=21.655;MQ=50.73;MQRankSum=-5.029;QD=30.97;ReadPosRankSum=-2.725;SOR=0.734;VarDP=70 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,38:38:99:.:.:1679,0:.:0,0,16,22 0|1:19,13:32:99:0|1:2448506_T_C:489,0,759:2448506:15,4,5,8 +chrX 2448531 . T A 1804 . AC=2;AF=0.667;AN=3;AS_AltDP=45;AS_QD=28.66;BaseQRankSum=0.83;DP=66;ExcessHet=0.0000;FS=22.200;MQ=50.87;MQRankSum=-4.944;QD=28.66;ReadPosRankSum=-2.09;SOR=0.820;VarDP=64 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,33:33:99:.:.:1398,0:.:0,0,13,20 0|1:19,12:31:99:0|1:2448506_T_C:436,0,739:2448506:15,4,5,7 +chrX 2448561 . G C 2045 . AC=2;AF=0.667;AN=3;AS_AltDP=49;AS_QD=27.30;BaseQRankSum=1.422;DP=77;ExcessHet=0.0000;FS=1.992;MQ=55.76;MQRankSum=-3.372;QD=27.30;ReadPosRankSum=-0.641;SOR=0.655;VarDP=76 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,36:36:99:.:.:1610,0:.:0,0,16,20 0|1:27,13:40:99:0|1:2448561_G_C:465,0,1095:2448561:15,12,7,6 +chrX 2448563 . T A 2135 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=27.76;BaseQRankSum=1.47;DP=78;ExcessHet=0.0000;FS=1.976;MQ=56.04;MQRankSum=-3.372;QD=27.76;ReadPosRankSum=-0.318;SOR=0.649;VarDP=78 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,38:38:99:.:.:1700,0:.:0,0,17,21 0|1:27,13:40:99:0|1:2448561_G_C:465,0,1095:2448561:15,12,7,6 +chrX 2448571 . G A 2085 . AC=2;AF=0.667;AN=3;AS_AltDP=50;AS_QD=26.11;BaseQRankSum=1.012;DP=81;ExcessHet=0.0000;FS=1.877;MQ=57.55;MQRankSum=-2.608;QD=26.11;ReadPosRankSum=0.227;SOR=0.621;VarDP=81 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,36:36:99:.:.:1620,0:.:0,0,16,20 0|1:31,14:45:99:0|1:2448561_G_C:495,0,1260:2448561:17,14,8,6 +chrX 2448576 . T A 2117 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=26.18;BaseQRankSum=0.539;DP=83;ExcessHet=0.0000;FS=1.845;MQ=57.70;MQRankSum=-2.608;QD=26.18;ReadPosRankSum=0.871;SOR=0.573;VarDP=82 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,37:37:99:.:.:1652,0:.:0,0,17,20 0|1:31,14:45:99:0|1:2448561_G_C:495,0,1260:2448561:17,14,8,6 +chrX 2448583 . T C 2277 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=26.83;BaseQRankSum=-1.302;DP=88;ExcessHet=0.0000;FS=0.844;MQ=57.84;MQRankSum=-2.398;QD=26.83;ReadPosRankSum=0.427;SOR=0.576;VarDP=86 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,40:40:99:.:.:1746,0:.:0,0,18,22 0|1:30,16:46:99:0|1:2448561_G_C:561,0,1212:2448561:16,14,10,6 +chrX 2449045 . T C 2383 . AC=2;AF=0.667;AN=3;AS_AltDP=79;AS_QD=23.20;BaseQRankSum=-2.445;DP=107;ExcessHet=0.0000;FS=0.000;MQ=59.72;MQRankSum=0;QD=23.20;ReadPosRankSum=-0.45;SOR=0.693;VarDP=104 GT:AD:DP:GQ:PL:SB 1:0,60:60:99:1960,0:0,0,32,28 0/1:25,19:44:99:453,0,727:12,13,6,13 +chrX 2449138 . A G 2282 . AC=2;AF=0.667;AN=3;AS_AltDP=70;AS_QD=23.35;BaseQRankSum=0.717;DP=100;ExcessHet=0.0000;FS=2.970;MQ=59.66;MQRankSum=0.721;QD=23.35;ReadPosRankSum=0.436;SOR=1.059;VarDP=99 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,57:57:99:.:.:1866,0:.:0,0,37,20 0|1:29,13:42:99:0|1:2449138_A_G:446,0,1168:2449138:16,13,7,6 +chrX 2449141 . A G 385 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=10.12;BaseQRankSum=1.039;DP=86;ExcessHet=0.0000;FS=0.000;MQ=59.80;MQRankSum=0.697;QD=10.12;ReadPosRankSum=1.204;SOR=0.791;VarDP=41 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:45:99:45:.:.:0,1245 0|1:29,12:41:99:.:0|1:2449138_A_G:415,0,1171:2449138:16,13,7,5 +chrX 2449189 . CAA C 1687.97 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=23.34;BaseQRankSum=1.617;DP=89;ExcessHet=0.0000;FS=17.119;MQ=59.59;MQRankSum=0;QD=23.34;ReadPosRankSum=-0.991;SOR=1.756;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,34:34:99:1233,0:0,0,24,10 0/1:23,17:40:99:494,0,675:9,14,12,5 +chrX 2449218 . C T 1720 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=20.83;BaseQRankSum=3.933;DP=91;ExcessHet=0.0000;FS=23.139;MQ=59.87;MQRankSum=0;QD=20.83;ReadPosRankSum=0.887;SOR=1.716;VarDP=84 GT:AD:DP:GQ:PL:SB 1:2,40:42:99:1315,0:2,0,27,13 0/1:25,17:42:99:435,0,732:8,17,13,4 +chrX 2449262 . A C 2160 . AC=2;AF=0.667;AN=3;AS_AltDP=71;AS_QD=22.12;BaseQRankSum=0.041;DP=101;ExcessHet=0.0000;FS=7.600;MQ=57.86;MQRankSum=-2.996;QD=22.12;ReadPosRankSum=0.531;SOR=1.300;VarDP=99 GT:AD:DP:GQ:PL:SB 1:0,52:52:99:1692,0:0,0,33,19 0/1:28,19:47:99:498,0,802:13,15,12,7 +chrX 2449536 . C T 3177 . AC=2;AF=0.667;AN=3;AS_AltDP=100;AS_QD=26.50;BaseQRankSum=-0.037;DP=125;ExcessHet=0.0000;FS=3.314;MQ=60.00;MQRankSum=0;QD=26.50;ReadPosRankSum=-0.479;SOR=1.161;VarDP=121 GT:AD:DP:GQ:PL:SB 1:0,70:70:99:2348,0:0,0,44,26 0/1:21,30:51:99:859,0,576:11,10,18,12 +chrX 2449653 . A G 2823 . AC=2;AF=0.667;AN=3;AS_AltDP=92;AS_QD=25.70;BaseQRankSum=0.985;DP=119;ExcessHet=0.0000;FS=0.952;MQ=60.00;MQRankSum=0;QD=25.70;ReadPosRankSum=-0.885;SOR=0.546;VarDP=111 GT:AD:DP:GQ:PL:SB 1:0,66:66:99:2114,0:0,0,34,32 0/1:19,26:45:99:739,0,455:11,8,15,11 +chrX 2449734 . G A 57 . AC=1;AF=0.333;AN=3;AS_AltDP=41;AS_QD=1.12;BaseQRankSum=-0.463;DP=149;ExcessHet=0.0000;FS=4.295;MQ=60.00;MQRankSum=0;QD=1.12;ReadPosRankSum=-1.912;SOR=0.458;VarDP=78 GT:AD:DP:GQ:MIN_DP:PL:SB 1:37,41:78:87:.:87,0:22,15,20,21 0/0:.:68:99:68:0,120,1800 +chrX 2449749 . A G 722 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=12.13;BaseQRankSum=-1.215;DP=148;ExcessHet=0.0000;FS=3.514;MQ=60.00;MQRankSum=0;QD=12.13;ReadPosRankSum=0.6;SOR=0.711;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:83:99:83:0,1800 0/1:33,29:62:99:.:752,0,921:19,14,13,16 +chrX 2449991 . A G 2634 . AC=2;AF=0.667;AN=3;AS_AltDP=85;AS_QD=23.58;BaseQRankSum=-0.534;DP=114;ExcessHet=0.0000;FS=2.850;MQ=60.00;MQRankSum=0;QD=23.58;ReadPosRankSum=1.328;SOR=0.764;VarDP=113 GT:AD:DP:GQ:PL:SB 1:0,60:60:99:2005,0:0,0,27,33 0/1:28,25:53:99:659,0,774:15,13,12,13 +chrX 2450101 . A G 2887 . AC=2;AF=0.667;AN=3;AS_AltDP=93;AS_QD=24.31;BaseQRankSum=1.034;DP=124;ExcessHet=0.0000;FS=9.147;MQ=59.89;MQRankSum=-1.148;QD=24.31;ReadPosRankSum=-0.502;SOR=1.208;VarDP=120 GT:AD:DP:GQ:PL:SB 1:0,74:74:99:2405,0:0,0,28,46 0/1:27,19:46:99:512,0,757:15,12,7,12 +chrX 2450127 . CA C 2045.97 . AC=2;AF=0.667;AN=3;AS_AltDP=78;AS_QD=20.05;BaseQRankSum=0.414;DP=124;ExcessHet=0.0000;FS=5.925;MQ=59.89;MQRankSum=-1.189;QD=20.05;ReadPosRankSum=0.94;SOR=1.099;VarDP=104 GT:AD:DP:GQ:PL:SB 1:0,61:61:99:1727,0:0,0,24,37 0/1:26,17:43:99:358,0,612:14,12,7,10 +chrX 2450150 . CAATA C 3033.97 . AC=2;AF=0.667;AN=3;AS_AltDP=72;AS_QD=30.13;BaseQRankSum=2.172;DP=130;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=30.13;ReadPosRankSum=1.775;SOR=0.659;VarDP=102 GT:AD:DP:GQ:PL:SB 1:0,58:58:99:2575,0:0,0,25,33 0/1:30,14:44:99:498,0,1192:13,17,7,7 +chrX 2450232 . G A 2892 . AC=2;AF=0.667;AN=3;AS_AltDP=93;AS_QD=24.55;BaseQRankSum=1.169;DP=127;ExcessHet=0.0000;FS=2.952;MQ=60.00;MQRankSum=0;QD=24.55;ReadPosRankSum=-0.886;SOR=0.529;VarDP=119 GT:AD:DP:GQ:PL:SB 1:0,68:68:99:2226,0:0,0,34,34 0/1:26,25:51:99:696,0,699:11,15,14,11 +chrX 2450888 . A G 2457 . AC=2;AF=0.667;AN=3;AS_AltDP=80;AS_QD=23.69;BaseQRankSum=1.302;DP=106;ExcessHet=0.0000;FS=0.853;MQ=60.00;MQRankSum=0;QD=23.69;ReadPosRankSum=1.292;SOR=0.675;VarDP=105 GT:AD:DP:GQ:PL:SB 1:0,61:61:99:1994,0:0,0,32,29 0/1:25,19:44:99:493,0,667:12,13,9,10 +chrX 2450921 . T C 2481 . AC=2;AF=0.667;AN=3;AS_AltDP=83;AS_QD=22.83;BaseQRankSum=0.092;DP=118;ExcessHet=0.0000;FS=4.124;MQ=60.00;MQRankSum=0;QD=22.83;ReadPosRankSum=-0.499;SOR=0.436;VarDP=110 GT:AD:DP:GQ:PL:SB 1:0,62:62:99:1985,0:0,0,32,30 0/1:27,21:48:99:526,0,714:11,16,10,11 +chrX 2451233 . TA T,TAA 897.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=32,14;AS_QD=17.05,9.21;BaseQRankSum=0.449;DP=83;ExcessHet=0.0000;FS=0.000;MQ=59.06;MQRankSum=5.834;QD=16.73;ReadPosRankSum=0.893;SOR=0.693;VarDP=56 GT:AD:DP:GQ:PL:SB 1:1,32,0:33:99:716,0,738:0,1,14,18 0/2:9,0,14:23:99:221,248,418,0,170,128:4,5,5,9 +chrX 2451349 . T C 2687 . AC=2;AF=0.667;AN=3;AS_AltDP=87;AS_QD=25.39;BaseQRankSum=2.781;DP=110;ExcessHet=0.0000;FS=0.000;MQ=59.71;MQRankSum=0;QD=25.39;ReadPosRankSum=0.352;SOR=0.716;VarDP=107 GT:AD:DP:GQ:PL:SB 1:1,63:64:99:2084,0:0,1,29,34 0/1:19,24:43:99:633,0,509:10,9,15,9 +chrX 2451709 . A G 3296 . AC=2;AF=0.667;AN=3;AS_AltDP=105;AS_QD=24.82;BaseQRankSum=1.265;DP=140;ExcessHet=0.0000;FS=2.764;MQ=60.00;MQRankSum=0;QD=24.82;ReadPosRankSum=0.787;SOR=0.920;VarDP=134 GT:AD:DP:GQ:PL:SB 1:0,73:73:99:2436,0:0,0,36,37 0/1:29,32:61:99:890,0,725:15,14,10,22 +chrX 2452068 . G T 2299 . AC=2;AF=0.667;AN=3;AS_AltDP=79;AS_QD=21.17;BaseQRankSum=-0.015;DP=112;ExcessHet=0.0000;FS=2.766;MQ=60.00;MQRankSum=0;QD=21.17;ReadPosRankSum=0.524;SOR=0.895;VarDP=110 GT:AD:DP:GQ:PL:SB 1:0,57:57:99:1753,0:0,0,22,35 0/1:31,22:53:99:576,0,860:16,15,13,9 +chrX 2452134 . C T 2382 . AC=2;AF=0.667;AN=3;AS_AltDP=85;AS_QD=20.62;BaseQRankSum=3.627;DP=119;ExcessHet=0.0000;FS=0.777;MQ=60.00;MQRankSum=0;QD=20.62;ReadPosRankSum=0.088;SOR=0.608;VarDP=117 GT:AD:DP:GQ:PL:SB 1:4,56:60:99:1716,0:1,3,23,33 0/1:28,29:57:99:696,0,733:16,12,19,10 +chrX 2452232 . T C 2377 . AC=2;AF=0.667;AN=3;AS_AltDP=82;AS_QD=21.88;BaseQRankSum=-1.853;DP=112;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=21.88;ReadPosRankSum=-0.319;SOR=0.742;VarDP=110 GT:AD:DP:GQ:PL:SB 1:0,53:53:99:1662,0:0,0,27,26 0/1:28,29:57:99:745,0,772:14,14,13,16 +chrX 2452444 . T A 2969 . AC=2;AF=0.667;AN=3;AS_AltDP=72;AS_QD=31.57;BaseQRankSum=-0.05;DP=98;ExcessHet=0.0000;FS=0.925;MQ=60.00;MQRankSum=0;QD=31.57;ReadPosRankSum=-0.217;SOR=0.566;VarDP=95 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,39:39:99:.:.:1704,0:.:0,0,25,14 0|1:23,33:56:99:0|1:2452444_T_A:1295,0,856:2452444:15,8,19,14 +chrX 2452453 . G A 2954 . AC=2;AF=0.667;AN=3;AS_AltDP=71;AS_QD=31.41;BaseQRankSum=0.878;DP=99;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=31.41;ReadPosRankSum=0.05;SOR=0.698;VarDP=95 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,39:39:99:.:.:1724,0:.:0,0,24,15 0|1:24,32:56:99:0|1:2452444_T_A:1260,0,880:2452444:15,9,20,12 +chrX 2452676 . T G 3802 . AC=2;AF=0.667;AN=3;AS_AltDP=94;AS_QD=29.48;BaseQRankSum=-0.256;DP=130;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=29.48;ReadPosRankSum=-1.051;SOR=0.693;VarDP=130 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,60:60:99:.:.:2575,0:.:0,0,29,31 0|1:36,34:70:99:0|1:2452676_T_G:1257,0,1387:2452676:18,18,18,16 +chrX 2452694 . A G 3654 . AC=2;AF=0.667;AN=3;AS_AltDP=92;AS_QD=28.12;BaseQRankSum=-2.369;DP=135;ExcessHet=0.0000;FS=1.508;MQ=59.88;MQRankSum=0;QD=28.12;ReadPosRankSum=-0.315;SOR=0.557;VarDP=131 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,56:56:99:.:.:2383,0:.:0,0,27,29 0|1:39,36:75:99:0|1:2452676_T_G:1301,0,1456:2452676:21,18,19,17 +chrX 2452743 . G T 2618 . AC=2;AF=0.667;AN=3;AS_AltDP=88;AS_QD=20.53;BaseQRankSum=2.487;DP=133;ExcessHet=0.0000;FS=3.469;MQ=59.87;MQRankSum=0;QD=20.53;ReadPosRankSum=2.115;SOR=0.964;VarDP=129 GT:AD:DP:GQ:PL:SB 1:1,54:55:99:1737,0:0,1,33,21 0/1:40,34:74:99:911,0,944:20,20,17,17 +chrX 2452822 . A G 2525 . AC=2;AF=0.667;AN=3;AS_AltDP=85;AS_QD=19.65;BaseQRankSum=1.436;DP=131;ExcessHet=0.0000;FS=3.366;MQ=60.00;MQRankSum=0;QD=19.65;ReadPosRankSum=-1.033;SOR=0.467;VarDP=130 GT:AD:DP:GQ:PL:SB 1:0,64:64:99:2033,0:0,0,34,30 0/1:45,21:66:99:522,0,1286:19,26,9,12 +chrX 2453542 . T C 2122 . AC=2;AF=0.667;AN=3;AS_AltDP=72;AS_QD=22.42;BaseQRankSum=-0.408;DP=105;ExcessHet=0.0000;FS=17.492;MQ=58.88;MQRankSum=-0.872;QD=22.42;ReadPosRankSum=0.492;SOR=0.419;VarDP=96 GT:AD:DP:GQ:PL:SB 1:0,43:43:99:1379,0:0,0,23,20 0/1:24,29:53:99:773,0,635:6,18,16,13 +chrX 2453754 . T C 1421 . AC=1;AF=0.333;AN=3;AS_AltDP=42;AS_QD=34.55;DP=110;ExcessHet=0.0000;FS=0.000;MQ=59.51;QD=34.55;SOR=0.693;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,42:42:99:.:1451,0:0,0,21,21 0/0:.:56:80:56:0,80,1300 +chrX 2453767 . A G 511 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=14.24;BaseQRankSum=-0.239;DP=102;ExcessHet=0.0000;FS=4.655;MQ=60.00;MQRankSum=0;QD=14.24;ReadPosRankSum=-1.302;SOR=0.255;VarDP=38 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,1264 0/1:18,20:38:99:.:541,0,481:12,6,10,10 +chrX 2454179 . G T 3365 . AC=2;AF=0.667;AN=3;AS_AltDP=111;AS_QD=23.41;BaseQRankSum=-1.062;DP=152;ExcessHet=0.0000;FS=0.745;MQ=58.79;MQRankSum=-1.921;QD=23.41;ReadPosRankSum=0.856;SOR=0.813;VarDP=145 GT:AD:DP:GQ:PL:SB 1:0,83:83:99:2703,0:0,0,49,34 0/1:34,28:62:99:692,0,936:20,14,19,9 +chrX 2454255 . T G 3341 . AC=2;AF=0.667;AN=3;AS_AltDP=112;AS_QD=23.41;BaseQRankSum=-0.117;DP=150;ExcessHet=0.0000;FS=2.612;MQ=58.23;MQRankSum=-1.596;QD=23.41;ReadPosRankSum=-1.734;SOR=0.573;VarDP=144 GT:AD:DP:GQ:PL:SB 1:0,74:74:99:2361,0:0,0,38,36 0/1:32,38:70:99:1010,0,821:18,14,16,22 +chrX 2454352 . C T 2962 . AC=2;AF=0.667;AN=3;AS_AltDP=98;AS_QD=21.84;BaseQRankSum=-0.97;DP=148;ExcessHet=0.0000;FS=2.436;MQ=59.89;MQRankSum=0;QD=21.84;ReadPosRankSum=-2.022;SOR=0.876;VarDP=137 GT:AD:DP:GQ:PL:SB 1:0,61:61:99:2029,0:0,0,28,33 0/1:39,37:76:99:963,0,1063:20,19,16,21 +chrX 2454527 . C CAA 1999.97 . AC=2;AF=0.667;AN=3;AS_AltDP=64;AS_QD=21.46;BaseQRankSum=-0.258;DP=133;ExcessHet=0.0000;FS=0.000;MQ=59.66;MQRankSum=0;QD=21.46;ReadPosRankSum=-0.146;SOR=0.693;VarDP=95 GT:AD:DP:GQ:PL:SB 1:0,48:48:99:1623,0:0,0,20,28 0/1:31,16:47:99:416,0,937:14,17,9,7 +chrX 2454627 . A C 2064 . AC=2;AF=0.667;AN=3;AS_AltDP=70;AS_QD=19.75;BaseQRankSum=-1.212;DP=109;ExcessHet=0.0000;FS=6.591;MQ=60.00;MQRankSum=0;QD=19.75;ReadPosRankSum=0.191;SOR=0.515;VarDP=106 GT:AD:DP:GQ:PL:SB 1:0,53:53:99:1717,0:0,0,27,26 0/1:36,17:53:99:377,0,1060:14,22,10,7 +chrX 2454840 . T C 3726 . AC=2;AF=0.667;AN=3;AS_AltDP=96;AS_QD=30.54;BaseQRankSum=-2.877;DP=126;ExcessHet=0.0000;FS=5.633;MQ=60.00;MQRankSum=0;QD=30.54;ReadPosRankSum=-0.476;SOR=0.953;VarDP=123 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,69:69:99:.:.:2858,0:.:0,0,42,27 0|1:27,27:54:99:0|1:2454840_T_C:898,0,960:2454840:12,15,14,13 +chrX 2454865 . A C 3504 . AC=2;AF=0.667;AN=3;AS_AltDP=87;AS_QD=31.27;BaseQRankSum=-1.963;DP=115;ExcessHet=0.0000;FS=5.779;MQ=59.77;MQRankSum=0;QD=31.27;ReadPosRankSum=0.34;SOR=0.791;VarDP=113 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,62:62:99:.:.:2676,0:.:0,0,36,26 0|1:26,25:51:99:0|1:2454840_T_C:858,0,945:2454840:11,15,13,12 +chrX 2455112 . C CA 1301.97 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=16.56;BaseQRankSum=-0.335;DP=108;ExcessHet=0.0000;FS=2.076;MQ=59.61;MQRankSum=0;QD=16.56;ReadPosRankSum=1.001;SOR=1.016;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,34:34:99:885,0:0,0,21,13 0/1:24,23:47:99:456,0,480:14,10,16,7 +chrX 2455192 . G C 1677 . AC=1;AF=0.333;AN=3;AS_AltDP=54;AS_QD=31.04;BaseQRankSum=-0.392;DP=128;ExcessHet=0.0000;FS=3.786;MQ=59.57;MQRankSum=0;QD=31.04;ReadPosRankSum=-1.513;SOR=0.837;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,54:55:99:.:1707,0:1,0,22,32 0/0:.:69:99:69:0,120,1800 +chrX 2455234 . T C 2618 . AC=2;AF=0.667;AN=3;AS_AltDP=88;AS_QD=21.70;BaseQRankSum=1.902;DP=127;ExcessHet=0.0000;FS=5.001;MQ=59.80;MQRankSum=0;QD=21.70;ReadPosRankSum=0.986;SOR=1.179;VarDP=122 GT:AD:DP:GQ:PL:SB 1:1,57:58:99:1837,0:1,0,22,35 0/1:33,31:64:99:811,0,890:16,17,13,18 +chrX 2455561 . A G 2397 . AC=2;AF=0.667;AN=3;AS_AltDP=78;AS_QD=22.06;BaseQRankSum=1.054;DP=114;ExcessHet=0.0000;FS=0.782;MQ=59.85;MQRankSum=0;QD=22.06;ReadPosRankSum=0.053;SOR=0.582;VarDP=110 GT:AD:DP:GQ:PL:SB 1:1,64:65:99:2086,0:1,0,31,33 0/1:31,14:45:99:341,0,882:16,15,8,6 +chrX 2455741 . C CA,CAA 277.97 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=6,7;AS_QD=10.87,13.21;BaseQRankSum=0.28;DP=108;ExcessHet=0.0000;FS=1.515;MQ=58.95;MQRankSum=-1.076;QD=10.57;ReadPosRankSum=-0.754;SOR=0.392;VarDP=30 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:51:99:51:0,555,555 0/2:17,6,7:30:67:.:317,67,315,0,215,404:12,5,8,5 +chrX 2455788 . C T 3263 . AC=3;AF=1.00;AN=3;AS_AltDP=101;AS_QD=32.60;DP=105;ExcessHet=0.0000;FS=0.000;MQ=59.98;QD=32.60;SOR=0.930;VarDP=101 GT:AD:DP:GQ:PL:SB 1:0,55:55:99:1790,0:0,0,27,28 1/1:0,46:46:99:1503,137,0:0,0,18,28 +chrX 2456613 . CA C,CAA 410.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=15,23;AS_QD=2.41,8.76;BaseQRankSum=-1.304;DP=95;ExcessHet=0.0000;FS=6.006;MQ=59.59;MQRankSum=0;QD=7.89;ReadPosRankSum=0.895;SOR=0.214;VarDP=57 GT:AD:DP:GQ:PL:SB 1:12,15,0:27:82:82,0,344:8,4,8,7 0/2:7,0,23:30:62:368,389,520,0,130,62:6,1,13,10 +chrX 2457202 . G A 623 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=10.53;BaseQRankSum=1.007;DP=128;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=10.53;ReadPosRankSum=-0.237;SOR=0.659;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,506 0/1:37,25:62:99:.:653,0,1005:21,16,14,11 +chrX 2457686 . A G 875 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=18.85;BaseQRankSum=0.016;DP=112;ExcessHet=0.0000;FS=6.662;MQ=60.00;MQRankSum=0;QD=18.85;ReadPosRankSum=0.711;SOR=1.387;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,506 0/1:16,32:48:99:.:905,0,379:7,9,21,11 +chrX 2458073 . T A 777 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=14.16;BaseQRankSum=-0.407;DP=122;ExcessHet=0.0000;FS=7.296;MQ=60.00;MQRankSum=0;QD=14.16;ReadPosRankSum=0.974;SOR=0.593;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,506 0/1:28,29:57:99:.:807,0,781:18,10,13,16 +chrX 2458108 . G C 1320 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=22.13;BaseQRankSum=2.147;DP=125;ExcessHet=0.0000;FS=1.017;MQ=60.00;MQRankSum=0;QD=22.13;ReadPosRankSum=-1.147;SOR=0.503;VarDP=61 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:64:99:64:.:.:0,506 0|1:24,37:61:99:.:0|1:2458108_G_C:1350,0,901:2458108:15,9,21,16 +chrX 2458109 . G C 1320 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=22.13;BaseQRankSum=1.445;DP=125;ExcessHet=0.0000;FS=1.017;MQ=60.00;MQRankSum=0;QD=22.13;ReadPosRankSum=-1.255;SOR=0.503;VarDP=61 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:64:99:64:.:.:0,506 0|1:24,37:61:99:.:0|1:2458108_G_C:1350,0,901:2458108:15,9,21,16 +chrX 2458181 . A G 1061 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=19.48;BaseQRankSum=-1.034;DP=121;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=19.48;ReadPosRankSum=0.262;SOR=0.693;VarDP=56 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:64:99:64:.:.:0,506 0|1:28,28:56:99:.:0|1:2458181_A_G:1091,0,1061:2458181:18,10,18,10 +chrX 2458185 . T C 1061 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=19.48;BaseQRankSum=0.521;DP=121;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=19.48;ReadPosRankSum=-0.035;SOR=0.844;VarDP=56 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:64:99:64:.:.:0,506 0|1:28,28:56:99:.:0|1:2458181_A_G:1091,0,1061:2458181:17,11,18,10 +chrX 2458282 . A G 1385 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=20.81;BaseQRankSum=-0.549;DP=133;ExcessHet=0.0000;FS=3.318;MQ=60.00;MQRankSum=0;QD=20.81;ReadPosRankSum=-0.295;SOR=0.986;VarDP=68 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:64:99:64:.:.:0,506 0|1:32,36:68:99:.:0|1:2458282_A_G:1415,0,1215:2458282:15,17,21,15 +chrX 2458288 . T C 1500 . AC=1;AF=0.333;AN=3;AS_AltDP=39;AS_QD=21.55;BaseQRankSum=0.186;DP=135;ExcessHet=0.0000;FS=3.193;MQ=60.00;MQRankSum=0;QD=21.55;ReadPosRankSum=-0.585;SOR=0.885;VarDP=71 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:64:99:64:.:.:0,506 0|1:32,39:71:99:.:0|1:2458282_A_G:1530,0,1206:2458282:15,17,22,17 +chrX 2458303 . T G 1394 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=19.51;BaseQRankSum=-0.211;DP=137;ExcessHet=0.0000;FS=1.926;MQ=60.00;MQRankSum=0;QD=19.51;ReadPosRankSum=0.927;SOR=0.567;VarDP=73 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:64:99:64:.:.:0,506 0|1:36,37:73:99:.:0|1:2458282_A_G:1424,0,1348:2458282:16,20,19,18 +chrX 2458450 . A G 1049 . AC=1;AF=0.333;AN=3;AS_AltDP=40;AS_QD=14.01;BaseQRankSum=-0.111;DP=141;ExcessHet=0.0000;FS=1.876;MQ=60.00;MQRankSum=0;QD=14.01;ReadPosRankSum=-0.117;SOR=0.468;VarDP=77 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,506 0/1:37,40:77:99:.:1079,0,982:21,16,20,20 +chrX 2458518 . A G 1038 . AC=1;AF=0.333;AN=3;AS_AltDP=39;AS_QD=15.48;BaseQRankSum=-0.043;DP=136;ExcessHet=0.0000;FS=2.019;MQ=60.00;MQRankSum=0;QD=15.48;ReadPosRankSum=-0.823;SOR=0.535;VarDP=69 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,506 0/1:30,39:69:99:.:1068,0,775:17,13,19,20 +chrX 2458595 . G C 1228 . AC=1;AF=0.333;AN=3;AS_AltDP=43;AS_QD=18.23;BaseQRankSum=1.159;DP=135;ExcessHet=0.0000;FS=6.619;MQ=60.00;MQRankSum=0;QD=18.23;ReadPosRankSum=1.307;SOR=0.257;VarDP=69 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,506 0/1:26,43:69:99:.:1258,0,641:8,18,20,23 +chrX 2458642 . G C 988 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=16.69;BaseQRankSum=-1.967;DP=127;ExcessHet=0.0000;FS=3.684;MQ=59.92;MQRankSum=-0.538;QD=16.69;ReadPosRankSum=-1.526;SOR=0.510;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,506 0/1:23,38:61:99:.:1018,0,607:9,14,20,18 +chrX 2458674 . CTTCA C 1268.97 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=22.17;BaseQRankSum=-0.776;DP=125;ExcessHet=0.0000;FS=2.209;MQ=59.92;MQRankSum=-0.788;QD=22.17;ReadPosRankSum=-0.566;SOR=0.521;VarDP=59 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:64:99:64:.:.:0,506 0|1:26,33:59:99:.:0|1:2458674_CTTCA_C:1308,0,972:2458674:11,15,17,16 +chrX 2458681 . A G 1281 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=22.60;BaseQRankSum=-0.568;DP=124;ExcessHet=0.0000;FS=2.178;MQ=59.92;MQRankSum=-0.751;QD=22.60;ReadPosRankSum=-0.165;SOR=0.566;VarDP=58 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:64:99:64:.:.:0,506 0|1:25,33:58:99:.:0|1:2458674_CTTCA_C:1311,0,930:2458674:11,14,17,16 +chrX 2459550 . GTATATATA G,GTA,GTATATATATA 2345.97 . AC=0,2,1;AF=0.00,0.667,0.333;AN=3;AS_AltDP=21,42,13;AS_QD=31.84,30.56,31.69;DP=100;ExcessHet=0.0000;FS=0.000;MQ=59.72;QD=31.38;SOR=0.859;VarDP=76 GT:AD:DP:GQ:PL:SB 2:0,21,27,0:48:99:1398,215,0,1173:0,0,22,26 2/3:0,0,15,13:28:99:987,1021,1108,409,522,563,614,620,0,575:0,0,13,15 +chrX 2459757 . T C 487 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=10.14;BaseQRankSum=1.357;DP=117;ExcessHet=0.0000;FS=1.190;MQ=60.00;MQRankSum=0;QD=10.14;ReadPosRankSum=-0.232;SOR=0.457;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:74:64:0,74 0/1:31,20:51:99:.:517,0,864:22,9,13,7 +chrX 2460399 . C T 619 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=13.24;BaseQRankSum=2.894;DP=118;ExcessHet=0.0000;FS=4.054;MQ=48.30;MQRankSum=-0.636;QD=13.24;ReadPosRankSum=-0.03;SOR=1.099;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:99:66:0,1587 0/1:26,23:49:99:.:649,0,676:14,12,9,14 +chrX 2460488 . G A 682 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=11.30;BaseQRankSum=3.046;DP=131;ExcessHet=0.0000;FS=0.000;MQ=46.43;MQRankSum=-3.741;QD=11.30;ReadPosRankSum=-0.419;SOR=0.585;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:99:66:0,1587 0/1:37,26:63:99:.:712,0,975:16,21,12,14 +chrX 2460582 . C CT,CTTTTTTT 396.97 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=2,12;AS_QD=3.29,16.15;BaseQRankSum=-0.448;DP=112;ExcessHet=0.0000;FS=0.000;MQ=52.11;MQRankSum=-3.378;QD=15.03;ReadPosRankSum=-1.311;SOR=0.859;VarDP=29 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:99:66:0,1587,1587 0/2:15,2,12:29:99:.:436,380,675,0,312,627:6,9,5,9 +chrX 2460735 . C A 97 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=2.27;BaseQRankSum=0.852;DP=111;ExcessHet=0.0000;FS=1.031;MQ=54.69;MQRankSum=-1.933;QD=2.27;ReadPosRankSum=-0.362;SOR=0.976;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 1:26,30:56:99:.:127,0:13,13,13,17 0/0:.:52:72:52:0,72,1171 +chrX 2461644 . T C 238 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=4.79;BaseQRankSum=0.283;DP=109;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=4.79;ReadPosRankSum=-0.298;SOR=0.657;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 1:24,32:56:99:.:268,0:13,11,17,15 0/0:.:52:72:52:0,72,1171 +chrX 2461706 . T G 817 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=13.44;BaseQRankSum=-2.527;DP=137;ExcessHet=0.0000;FS=2.122;MQ=60.00;MQRankSum=0;QD=13.44;ReadPosRankSum=-1.228;SOR=0.420;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:71:99:71:0,1662 0/1:29,34:63:99:.:847,0,789:17,12,17,17 +chrX 2462184 . CA C 176.97 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=4.32;BaseQRankSum=0.671;DP=140;ExcessHet=0.0000;FS=1.186;MQ=60.00;MQRankSum=0;QD=4.32;ReadPosRankSum=-1.206;SOR=0.504;VarDP=50 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:71:99:71:.:.:0,1662 0|1:36,14:50:99:.:0|1:2462184_CA_C:216,0,1375:2462184:16,20,7,7 +chrX 2462199 . A G 661 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=11.15;BaseQRankSum=-0.641;DP=137;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=11.15;ReadPosRankSum=-2.369;SOR=0.756;VarDP=62 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:71:99:71:.:.:0,1662 0|1:39,23:62:99:.:0|1:2462184_CA_C:691,0,1053:2462184:16,23,9,14 +chrX 2462535 . CA C 1982.97 . AC=2;AF=0.667;AN=3;AS_AltDP=76;AS_QD=19.63;BaseQRankSum=0.036;DP=123;ExcessHet=0.0000;FS=4.459;MQ=60.00;MQRankSum=0;QD=19.63;ReadPosRankSum=0.321;SOR=0.320;VarDP=103 GT:AD:DP:GQ:PL:SB 1:0,53:53:99:1513,0:0,0,18,35 0/1:27,23:50:99:509,0,619:8,19,14,9 +chrX 2463210 . A G 3725 . AC=2;AF=0.667;AN=3;AS_AltDP=87;AS_QD=34.14;BaseQRankSum=-1.322;DP=115;ExcessHet=0.0000;FS=9.890;MQ=59.96;MQRankSum=0;QD=34.14;ReadPosRankSum=0.253;SOR=0.597;VarDP=110 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,64:64:99:.:.:2859,0:.:0,0,26,38 0|1:23,23:46:99:0|1:2463210_A_G:896,0,890:2463210:15,8,13,10 +chrX 2463211 . G A 3725 . AC=2;AF=0.667;AN=3;AS_AltDP=87;AS_QD=34.14;BaseQRankSum=0.023;DP=115;ExcessHet=0.0000;FS=9.890;MQ=59.96;MQRankSum=0;QD=34.14;ReadPosRankSum=0.22;SOR=0.597;VarDP=110 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,64:64:99:.:.:2859,0:.:0,0,26,38 0|1:23,23:46:99:0|1:2463210_A_G:896,0,890:2463210:15,8,13,10 +chrX 2463274 . C G 323 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=6.09;BaseQRankSum=-2.02;DP=109;ExcessHet=0.0000;FS=3.855;MQ=59.92;MQRankSum=-0.775;QD=6.09;ReadPosRankSum=0.087;SOR=1.362;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 1:23,35:58:99:.:353,0:11,12,12,23 0/0:.:49:99:49:0,105,1345 +chrX 2463333 . G A 1538 . AC=2;AF=0.667;AN=3;AS_AltDP=48;AS_QD=32.67;DP=102;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.67;SOR=0.776;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:51:99:51:0,258 1/1:0,48:48:99:.:1568,144,0:0,0,25,23 +chrX 2463397 . T C 728 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=13.54;BaseQRankSum=0.261;DP=110;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.54;ReadPosRankSum=-0.968;SOR=0.689;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:51:99:51:0,258 0/1:27,29:56:99:.:758,0,674:14,13,15,14 +chrX 2463851 . G T 783 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=7.07;BaseQRankSum=1.65;DP=117;ExcessHet=0.0000;FS=2.411;MQ=59.68;MQRankSum=-0.867;QD=7.07;ReadPosRankSum=-0.172;SOR=0.485;VarDP=115 GT:AD:DP:GQ:PL:SB 1:29,36:65:99:253,0:13,16,17,19 0/1:29,21:50:99:560,0,733:10,19,9,12 +chrX 2463881 . G A 905 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=8.82;BaseQRankSum=1.793;DP=108;ExcessHet=0.0000;FS=4.727;MQ=59.72;MQRankSum=-1.084;QD=8.82;ReadPosRankSum=-0.394;SOR=0.387;VarDP=106 GT:AD:DP:GQ:PL:SB 1:23,31:54:99:322,0:9,14,16,15 0/1:29,23:52:99:613,0,779:12,17,11,12 +chrX 2464163 . G A 778 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=14.43;BaseQRankSum=-1.077;DP=120;ExcessHet=0.0000;FS=1.010;MQ=60.00;MQRankSum=0;QD=14.43;ReadPosRankSum=1.286;SOR=0.544;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,1355 0/1:25,31:56:99:.:808,0,672:11,14,15,16 +chrX 2464205 . G GCCA,A 3954 . AC=2,0;AF=0.667,0.00;AN=3;AS_AltDP=90,2;AS_QD=34.05,10.55;BaseQRankSum=-0.278;DP=131;ExcessHet=0.0000;FS=12.831;MQ=60.00;MQRankSum=0;QD=33.48;ReadPosRankSum=0.376;SOR=0.860;VarDP=119 GT:AD:DP:GQ:PL:SB 1:0,67,0:67:99:2991,0,2992:0,0,25,42 0/1:27,23,2:52:99:993,0,1002,687,1031,1809:17,10,13,12 +chrX 2464324 . GGTTCCCTAGCAATCCGGCCAAGGGCCGCTGATGTGCACACACTGAAGAC G 558.97 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=9.97;BaseQRankSum=0.051;DP=128;ExcessHet=0.0000;FS=12.403;MQ=59.88;MQRankSum=-1.379;QD=9.97;ReadPosRankSum=-0.122;SOR=1.236;VarDP=60 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:68:99:68:.:.:0,1260 0|1:40,20:60:99:.:0|1:2464324_GGTTCCCTAGCAATCCGGCCAAGGGCCGCTGATGTGCACACACTGAAGAC_G:598,0,1625:2464324:25,15,7,13 +chrX 2464340 . G A,* 1021 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=32,0;AS_QD=32.84,30.77;DP=129;ExcessHet=0.0000;FS=5.354;MQ=60.00;QD=32.84;SOR=0.321;VarDP=32 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,32,0:32:99:.:.:1051,0,1313:.:0,0,19,13 0|2:40,0,20:60:99:0|1:2464324_GGTTCCCTAGCAATCCGGCCAAGGGCCGCTGATGTGCACACACTGAAGAC_G:598,718,2398,0,1680,1625:2464324:25,15,7,13 +chrX 2464404 . A G 858 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=8.71;BaseQRankSum=-0.03;DP=103;ExcessHet=0.0000;FS=1.612;MQ=58.84;MQRankSum=-2.055;QD=8.71;ReadPosRankSum=-0.956;SOR=0.908;VarDP=102 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:23,32:55:99:.:.:354,0:.:13,10,23,9 0|1:32,15:47:99:0|1:2464324_GGTTCCCTAGCAATCCGGCCAAGGGCCGCTGATGTGCACACACTGAAGAC_G:534,0,1299:2464324:17,15,5,10 +chrX 2464411 . ACACACTGAAGATGTTCCCTAAGAATGTGGGTAAGGGACCGCCGCCATGTTCGCACTGAAGACGCTCCCTAAGAATGCGTCCAGGGGACTGCTGCCGTGTG A 360.97 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=6.35;BaseQRankSum=0.088;DP=115;ExcessHet=0.0000;FS=8.675;MQ=59.55;MQRankSum=-2.64;QD=6.35;ReadPosRankSum=-1.825;SOR=1.728;VarDP=63 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:52:99:52:.:.:0,900 0|1:49,14:63:99:.:0|1:2464324_GGTTCCCTAGCAATCCGGCCAAGGGCCGCTGATGTGCACACACTGAAGAC_G:400,0,1959:2464324:26,23,4,10 +chrX 2465143 . A T 1148 . AC=2;AF=0.667;AN=3;AS_AltDP=70;AS_QD=8.99;BaseQRankSum=0.228;DP=133;ExcessHet=0.0000;FS=1.384;MQ=60.00;MQRankSum=0;QD=8.99;ReadPosRankSum=1.962;SOR=0.665;VarDP=131 GT:AD:DP:GQ:PL:SB 1:29,33:62:99:139,0:16,13,13,20 0/1:32,37:69:99:1039,0,865:16,16,21,16 +chrX 2465433 . G A 78 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=1.69;BaseQRankSum=-1.811;DP=143;ExcessHet=0.0000;FS=8.503;MQ=59.93;MQRankSum=1.063;QD=1.69;ReadPosRankSum=-1.143;SOR=0.552;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 1:31,33:64:99:.:108,0:20,11,15,18 0/0:.:75:67:75:0,67,1658 +chrX 2465436 . G C 46 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=1.21;BaseQRankSum=0.42;DP=140;ExcessHet=0.0000;FS=8.818;MQ=59.93;MQRankSum=1.048;QD=1.21;ReadPosRankSum=-1.039;SOR=0.658;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 1:31,32:63:76:.:76,0:20,11,14,18 0/0:.:75:67:75:0,67,1658 +chrX 2465521 . G A 123 . AC=1;AF=0.333;AN=3;AS_AltDP=39;AS_QD=2.07;BaseQRankSum=0.334;DP=153;ExcessHet=0.0000;FS=6.127;MQ=59.94;MQRankSum=1.083;QD=2.07;ReadPosRankSum=-0.991;SOR=0.280;VarDP=74 GT:AD:DP:GQ:MIN_DP:PL:SB 1:35,39:74:99:.:153,0:12,23,19,20 0/0:.:75:67:75:0,67,1658 +chrX 2465600 . C T 677 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=6.04;BaseQRankSum=3.148;DP=119;ExcessHet=0.0000;FS=1.489;MQ=60.00;MQRankSum=0;QD=6.04;ReadPosRankSum=-1.174;SOR=0.907;VarDP=117 GT:AD:DP:GQ:PL:SB 1:29,34:63:99:174,0:12,17,13,21 0/1:34,20:54:99:533,0,874:18,16,10,10 +chrX 2465809 . CAA C,CAAAAAAAAAAAAAAAA,CAAAAAAAAAAAAA,CAAAAAA 489.97 . AC=1,0,0,0;AF=0.333,0.00,0.00,0.00;AN=3;AS_AltDP=16,0,1,14;AS_QD=33.06,30.80,33.53,33.50;DP=87;ExcessHet=0.0000;FS=0.000;MQ=58.32;QD=17.06;SOR=0.756;VarDP=31 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,16,0,1,14:31:60:.:529,0,559,432,60:0,0,16,15 0/0:.:44:19:44:0,19,1162,19,1162,1162,19,1162,1162,1162,19,1162,1162,1162,1162 +chrX 2466659 . T C 640 . AC=1;AF=0.333;AN=3;AS_AltDP=43;AS_QD=10.47;BaseQRankSum=-1.398;DP=132;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=10.47;ReadPosRankSum=-1.223;SOR=0.651;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 1:21,43:64:99:.:670,0:10,11,21,22 0/0:.:67:56:67:0,56,921 +chrX 2467041 . G A 763 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=15.55;BaseQRankSum=0.434;DP=120;ExcessHet=0.0000;FS=2.665;MQ=60.00;MQRankSum=0;QD=15.55;ReadPosRankSum=0.475;SOR=0.676;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 1:14,37:51:99:.:793,0:8,6,17,20 0/0:.:67:56:67:0,56,921 +chrX 2467077 . A AC 673.97 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=14.55;BaseQRankSum=-1.415;DP=107;ExcessHet=0.0000;FS=4.263;MQ=60.00;MQRankSum=0;QD=14.55;ReadPosRankSum=-0.608;SOR=0.302;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 1:16,33:49:99:.:713,0:5,11,15,18 0/0:.:56:76:56:0,76,1162 +chrX 2467349 . C T 30 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=0.85;BaseQRankSum=-1.99;DP=132;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=0.845;ReadPosRankSum=0.75;SOR=0.722;VarDP=71 GT:AD:DP:GQ:MIN_DP:PL:SB 1:33,38:71:60:.:60,0:18,15,21,17 0/0:.:56:76:56:0,76,1162 +chrX 2467442 . T A 208 . AC=1;AF=0.333;AN=3;AS_AltDP=46;AS_QD=2.80;BaseQRankSum=0.579;DP=144;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=2.80;ReadPosRankSum=0.896;SOR=0.646;VarDP=85 GT:AD:DP:GQ:MIN_DP:PL:SB 1:39,46:85:99:.:238,0:20,19,23,23 0/0:.:56:76:56:0,76,1162 +chrX 2467531 . A T 934 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=13.21;BaseQRankSum=1.721;DP=146;ExcessHet=0.0000;FS=3.262;MQ=60.00;MQRankSum=0;QD=13.21;ReadPosRankSum=-0.445;SOR=0.490;VarDP=73 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:71:99:71:.:.:0,252 0|1:44,29:73:99:.:0|1:2467531_A_T:964,0,1648:2467531:18,26,15,14 +chrX 2467555 . C A 964 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=15.29;BaseQRankSum=2.185;DP=138;ExcessHet=0.0000;FS=0.941;MQ=60.00;MQRankSum=0;QD=15.29;ReadPosRankSum=-2.461;SOR=0.551;VarDP=65 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:71:99:71:.:.:0,252 0|1:37,28:65:99:.:0|1:2467531_A_T:994,0,1439:2467531:17,20,14,14 +chrX 2467628 . TG T 649.97 . AC=1;AF=0.333;AN=3;AS_AltDP=42;AS_QD=10.28;BaseQRankSum=-1.889;DP=126;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=10.28;ReadPosRankSum=1.09;SOR=0.807;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 1:25,42:67:99:.:689,0:12,13,19,23 0/0:.:56:99:56:0,116,1619 +chrX 2467800 . C T 835 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=18.80;BaseQRankSum=-0.05;DP=113;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=18.80;ReadPosRankSum=-0.099;SOR=0.545;VarDP=46 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:64:99:64:.:.:0,173 0|1:23,23:46:99:.:0|1:2467800_C_T:865,0,834:2467800:10,13,11,12 +chrX 2467818 . T C 914 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=20.52;BaseQRankSum=0.448;DP=112;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=20.52;ReadPosRankSum=-1.319;SOR=0.655;VarDP=46 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:64:99:64:.:.:0,173 0|1:20,26:46:99:.:0|1:2467800_C_T:944,0,721:2467800:9,11,12,14 +chrX 2467898 . G A 2415 . AC=2;AF=0.667;AN=3;AS_AltDP=77;AS_QD=26.01;BaseQRankSum=3.16;DP=98;ExcessHet=0.0000;FS=0.000;MQ=59.92;MQRankSum=0;QD=26.01;ReadPosRankSum=-0.536;SOR=0.622;VarDP=94 GT:AD:DP:GQ:PL:SB 1:1,54:55:99:1794,0:0,1,29,25 0/1:16,23:39:99:651,0,394:8,8,10,13 +chrX 2467952 . A G 442 . AC=2;AF=0.667;AN=3;AS_AltDP=41;AS_QD=6.05;BaseQRankSum=0.14;DP=81;ExcessHet=0.0000;FS=3.085;MQ=59.91;MQRankSum=0;QD=6.05;ReadPosRankSum=1.566;SOR=0.406;VarDP=78 GT:AD:DP:GQ:PL:SB 1:21,25:46:62:62,0:14,7,14,11 0/1:16,16:32:99:410,0,392:10,6,9,7 +chrX 2467978 . AAAT A 605.97 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=14.66;BaseQRankSum=-0.985;DP=96;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.66;ReadPosRankSum=0.853;SOR=0.573;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:52:99:52:0,292 0/1:25,19:44:99:.:645,0,951:11,14,9,10 +chrX 2468105 . G T 560 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=14.75;BaseQRankSum=-0.165;DP=102;ExcessHet=0.0000;FS=1.317;MQ=59.52;MQRankSum=-1.577;QD=14.75;ReadPosRankSum=0.299;SOR=0.997;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,198 0/1:18,22:40:99:.:590,0,475:12,6,16,6 +chrX 2468106 . A G 178 . AC=1;AF=0.333;AN=3;AS_AltDP=39;AS_QD=2.89;BaseQRankSum=0.403;DP=112;ExcessHet=0.0000;FS=8.085;MQ=58.32;MQRankSum=-2.914;QD=2.89;ReadPosRankSum=-1.13;SOR=0.891;VarDP=72 GT:AD:DP:GQ:MIN_DP:PL:SB 1:33,39:72:99:.:208,0:13,20,23,16 0/0:.:38:94:38:0,94,1122 +chrX 2468117 . T A 313 . AC=1;AF=0.333;AN=3;AS_AltDP=39;AS_QD=4.97;BaseQRankSum=-0.347;DP=112;ExcessHet=0.0000;FS=8.288;MQ=58.32;MQRankSum=-2.784;QD=4.97;ReadPosRankSum=-1.041;SOR=0.901;VarDP=69 GT:AD:DP:GQ:MIN_DP:PL:SB 1:30,39:69:99:.:343,0:12,18,23,16 0/0:.:38:94:38:0,94,1122 +chrX 2468138 . C T 579 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=17.40;BaseQRankSum=0.567;DP=100;ExcessHet=0.0000;FS=1.493;MQ=59.74;MQRankSum=-0.993;QD=17.40;ReadPosRankSum=1.356;SOR=0.409;VarDP=35 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:99:60:0,354 0/1:12,23:35:99:.:609,0,262:9,3,15,8 +chrX 2468291 . C G 689 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=11.98;BaseQRankSum=1.341;DP=123;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=11.98;ReadPosRankSum=0.764;SOR=0.726;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:99:60:0,354 0/1:32,28:60:99:.:719,0,781:14,18,12,16 +chrX 2468526 . T C 392 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=7.28;BaseQRankSum=1.355;DP=114;ExcessHet=0.0000;FS=3.880;MQ=59.86;MQRankSum=1.269;QD=7.28;ReadPosRankSum=0.684;SOR=1.303;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 1:23,35:58:99:.:422,0:13,10,24,11 0/0:.:55:63:55:0,63,1303 +chrX 2468621 . G A 2985 . AC=2;AF=0.667;AN=3;AS_AltDP=77;AS_QD=28.99;BaseQRankSum=2.433;DP=108;ExcessHet=0.0000;FS=2.967;MQ=60.00;MQRankSum=0;QD=28.99;ReadPosRankSum=-0.88;SOR=0.667;VarDP=104 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,59:59:99:.:.:2456,0:.:0,0,27,32 0|1:27,18:45:99:0|1:2468621_G_A:559,0,918:2468621:15,12,9,9 +chrX 2468655 . A C 2865 . AC=2;AF=0.667;AN=3;AS_AltDP=73;AS_QD=29.24;BaseQRankSum=0.594;DP=105;ExcessHet=0.0000;FS=1.871;MQ=60.00;MQRankSum=0;QD=29.24;ReadPosRankSum=1.15;SOR=0.963;VarDP=99 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,57:57:99:.:.:2377,0:.:0,0,22,35 0|1:26,16:42:99:0|1:2468621_G_A:518,0,951:2468621:13,13,10,6 +chrX 2468695 . C T 1915 . AC=1;AF=0.333;AN=3;AS_AltDP=62;AS_QD=31.37;DP=128;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.37;SOR=1.647;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,62:62:99:.:1945,0:0,0,20,42 0/0:.:59:63:59:0,63,1380 +chrX 2468805 . G C 56 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=1.62;BaseQRankSum=-1.065;DP=114;ExcessHet=0.0000;FS=22.352;MQ=59.25;MQRankSum=0.135;QD=1.62;ReadPosRankSum=-0.072;SOR=1.528;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 1:24,29:53:86:.:86,0:7,17,20,9 0/0:.:59:63:59:0,63,1380 +chrX 2468962 . A G 2622 . AC=2;AF=0.667;AN=3;AS_AltDP=94;AS_QD=21.56;BaseQRankSum=-0.26;DP=132;ExcessHet=0.0000;FS=1.720;MQ=59.82;MQRankSum=0;QD=21.56;ReadPosRankSum=0.85;SOR=0.513;VarDP=123 GT:AD:DP:GQ:PL:SB 1:0,55:55:99:1671,0:0,0,29,26 0/1:29,39:68:99:981,0,704:17,12,21,18 +chrX 2469828 . A G 2907 . AC=2;AF=0.667;AN=3;AS_AltDP=96;AS_QD=23.31;BaseQRankSum=-0.459;DP=128;ExcessHet=0.0000;FS=3.924;MQ=60.00;MQRankSum=0;QD=23.31;ReadPosRankSum=0.76;SOR=0.882;VarDP=126 GT:AD:DP:GQ:PL:SB 1:0,74:74:99:2370,0:0,0,41,33 0/1:30,22:52:99:567,0,846:14,16,13,9 +chrX 2470313 . G A 1875 . AC=1;AF=0.333;AN=3;AS_AltDP=64;AS_QD=28.01;BaseQRankSum=0.294;DP=127;ExcessHet=0.0000;FS=2.292;MQ=59.46;MQRankSum=-0.188;QD=28.01;ReadPosRankSum=1.278;SOR=1.721;VarDP=68 GT:AD:DP:GQ:MIN_DP:PL:SB 1:4,64:68:99:.:1905,0:2,2,44,20 0/0:.:56:72:56:0,72,939 +chrX 2470445 . C T 2267 . AC=1;AF=0.333;AN=3;AS_AltDP=70;AS_QD=32.81;DP=128;ExcessHet=0.0000;FS=0.000;MQ=59.63;QD=32.81;SOR=1.011;VarDP=70 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,70:70:99:.:2297,0:0,0,40,30 0/0:.:56:72:56:0,72,939 +chrX 2470586 . T C 626 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=14.26;BaseQRankSum=-1.19;DP=129;ExcessHet=0.0000;FS=1.143;MQ=58.74;MQRankSum=-0.128;QD=14.26;ReadPosRankSum=-1.064;SOR=0.494;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:82:99:82:0,1800 0/1:20,26:46:99:.:656,0,513:12,8,14,12 +chrX 2470648 . T C 3729 . AC=3;AF=1.00;AN=3;AS_AltDP=122;AS_QD=30.56;BaseQRankSum=1.337;DP=130;ExcessHet=0.0000;FS=3.265;MQ=58.59;MQRankSum=-0.368;QD=30.56;ReadPosRankSum=0.523;SOR=0.435;VarDP=123 GT:AD:DP:GQ:PL:SB 1:0,70:70:99:2205,0:0,0,31,39 1/1:1,52:53:99:1554,132,0:1,0,26,26 +chrX 2470890 . GA G 737.97 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=11.95;BaseQRankSum=0.216;DP=144;ExcessHet=0.0000;FS=4.883;MQ=58.52;MQRankSum=1.688;QD=11.95;ReadPosRankSum=0.161;SOR=0.606;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:75:99:75:0,1746 0/1:39,26:65:99:.:777,0,1288:23,16,12,14 +chrX 2471209 . C G 2032 . AC=1;AF=0.333;AN=3;AS_AltDP=66;AS_QD=31.24;DP=123;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.24;SOR=0.818;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,66:66:99:.:2062,0:0,0,31,35 0/0:.:69:34:56:0,34,1251 +chrX 2471378 . A C 1854 . AC=1;AF=0.333;AN=3;AS_AltDP=58;AS_QD=32.48;DP=115;ExcessHet=0.0000;FS=0.000;MQ=59.92;QD=32.48;SOR=1.382;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,58:58:99:.:1884,0:0,0,21,37 0/0:.:69:34:56:0,34,1251 +chrX 2471472 . C CAGA 1805.97 . AC=1;AF=0.333;AN=3;AS_AltDP=41;AS_QD=32.33;DP=102;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=45.00;SOR=0.741;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,41:41:99:.:1845,0:0,0,20,21 0/0:.:69:34:56:0,34,1251 +chrX 2471564 . C CA 837.97 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=25.79;DP=94;ExcessHet=0.0000;FS=0.000;MQ=59.87;QD=25.79;SOR=0.941;VarDP=34 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,34:34:99:.:877,0:0,0,19,15 0/0:.:69:34:56:0,34,1251 +chrX 2471615 . T C 1443 . AC=1;AF=0.333;AN=3;AS_AltDP=47;AS_QD=30.69;BaseQRankSum=-0.494;DP=106;ExcessHet=0.0000;FS=0.000;MQ=59.72;MQRankSum=0;QD=30.69;ReadPosRankSum=1.661;SOR=0.422;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,47:48:99:.:1473,0:1,0,28,19 0/0:.:69:34:56:0,34,1251 +chrX 2471718 . T C 2086 . AC=1;AF=0.333;AN=3;AS_AltDP=51;AS_QD=30.92;BaseQRankSum=1.648;DP=110;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=40.69;ReadPosRankSum=-0.347;SOR=0.311;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,51:52:99:.:2116,0:1,0,28,23 0/0:.:69:34:56:0,34,1251 +chrX 2471736 . G A 2060 . AC=1;AF=0.333;AN=3;AS_AltDP=50;AS_QD=26.90;BaseQRankSum=-0.349;DP=111;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=40.98;ReadPosRankSum=0.318;SOR=0.293;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,50:51:99:.:2090,0:1,0,27,23 0/0:.:69:34:56:0,34,1251 +chrX 2471764 . C T 1523 . AC=1;AF=0.333;AN=3;AS_AltDP=47;AS_QD=33.04;DP=107;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.04;SOR=0.735;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,47:47:99:.:1553,0:0,0,24,23 0/0:.:69:34:56:0,34,1251 +chrX 2471816 . T C 1522 . AC=1;AF=0.333;AN=3;AS_AltDP=50;AS_QD=30.43;BaseQRankSum=-0.506;DP=113;ExcessHet=0.0000;FS=3.854;MQ=59.92;MQRankSum=0;QD=30.43;ReadPosRankSum=0.544;SOR=0.888;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,50:51:99:.:1552,0:1,0,20,30 0/0:.:69:34:56:0,34,1251 +chrX 2471847 . T G 1572 . AC=1;AF=0.333;AN=3;AS_AltDP=52;AS_QD=30.23;BaseQRankSum=-0.647;DP=114;ExcessHet=0.0000;FS=0.000;MQ=59.92;MQRankSum=0;QD=30.23;ReadPosRankSum=-0.523;SOR=0.223;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,52:53:99:.:1602,0:1,0,26,26 0/0:.:69:34:56:0,34,1251 +chrX 2471888 . A G 1641 . AC=1;AF=0.333;AN=3;AS_AltDP=55;AS_QD=29.84;BaseQRankSum=1.284;DP=115;ExcessHet=0.0000;FS=0.000;MQ=59.92;MQRankSum=0;QD=29.84;ReadPosRankSum=-0.619;SOR=0.238;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,55:56:99:.:1671,0:1,0,28,27 0/0:.:69:34:56:0,34,1251 +chrX 2471921 . A G 2198 . AC=1;AF=0.333;AN=3;AS_AltDP=51;AS_QD=26.69;BaseQRankSum=1.572;DP=110;ExcessHet=0.0000;FS=0.000;MQ=59.91;MQRankSum=0;QD=42.85;ReadPosRankSum=0.918;SOR=0.284;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,51:52:99:.:2228,0:1,0,25,26 0/0:.:69:34:56:0,34,1251 +chrX 2471927 . A C 2188 . AC=1;AF=0.333;AN=3;AS_AltDP=51;AS_QD=33.56;BaseQRankSum=-0.533;DP=110;ExcessHet=0.0000;FS=0.000;MQ=59.91;MQRankSum=0;QD=42.65;ReadPosRankSum=1.233;SOR=0.284;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,51:52:99:.:2218,0:1,0,25,26 0/0:.:69:34:56:0,34,1251 +chrX 2471984 . A G 2332 . AC=1;AF=0.333;AN=3;AS_AltDP=55;AS_QD=30.03;DP=111;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=42.95;SOR=0.970;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,55:55:99:.:2362,0:0,0,31,24 0/0:.:69:34:56:0,34,1251 +chrX 2472006 . G A 2421 . AC=1;AF=0.333;AN=3;AS_AltDP=58;AS_QD=31.36;DP=114;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=42.26;SOR=0.914;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,58:58:99:.:2451,0:0,0,32,26 0/0:.:69:34:56:0,34,1251 +chrX 2472032 . T C 1726 . AC=1;AF=0.333;AN=3;AS_AltDP=54;AS_QD=32.52;DP=111;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.52;SOR=0.931;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,54:54:99:.:1756,0:0,0,30,24 0/0:.:69:34:56:0,34,1251 +chrX 2472061 . C G 1791 . AC=1;AF=0.333;AN=3;AS_AltDP=54;AS_QD=33.72;DP=111;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.72;SOR=1.220;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,54:54:99:.:1821,0:0,0,33,21 0/0:.:69:34:56:0,34,1251 +chrX 2472093 . C T 103 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=2.51;BaseQRankSum=1.892;DP=111;ExcessHet=0.0000;FS=0.000;MQ=59.91;MQRankSum=-0.907;QD=2.51;ReadPosRankSum=-0.339;SOR=0.557;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 1:25,28:53:99:.:133,0:17,8,18,10 0/0:.:69:34:56:0,34,1251 +chrX 2472143 . C CAAA 1342.97 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=28.03;DP=105;ExcessHet=0.0000;FS=0.000;MQ=59.88;QD=38.39;SOR=1.061;VarDP=36 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,36:36:99:.:1382,0:0,0,21,15 0/0:.:69:34:56:0,34,1251 +chrX 2472189 . C T 1285 . AC=1;AF=0.333;AN=3;AS_AltDP=40;AS_QD=32.88;DP=99;ExcessHet=0.0000;FS=0.000;MQ=59.76;QD=32.88;SOR=0.902;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,40:40:99:.:1315,0:0,0,22,18 0/0:.:69:34:56:0,34,1251 +chrX 2472220 . T C 1542 . AC=1;AF=0.333;AN=3;AS_AltDP=49;AS_QD=32.08;DP=106;ExcessHet=0.0000;FS=0.000;MQ=59.69;QD=32.08;SOR=0.909;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,49:49:99:.:1572,0:0,0,27,22 0/0:.:69:34:56:0,34,1251 +chrX 2472254 . C T 1886 . AC=1;AF=0.333;AN=3;AS_AltDP=59;AS_QD=31.93;BaseQRankSum=2.45;DP=117;ExcessHet=0.0000;FS=0.000;MQ=59.84;MQRankSum=-0.093;QD=31.93;ReadPosRankSum=1.444;SOR=0.237;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,59:60:99:.:1916,0:1,0,30,29 0/0:.:69:34:56:0,34,1251 +chrX 2472460 . A G 1943 . AC=1;AF=0.333;AN=3;AS_AltDP=64;AS_QD=30.83;DP=125;ExcessHet=0.0000;FS=0.000;MQ=59.65;QD=30.83;SOR=1.127;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,64:64:99:.:1973,0:0,0,38,26 0/0:.:69:34:56:0,34,1251 +chrX 2472686 . T C 2048 . AC=1;AF=0.333;AN=3;AS_AltDP=67;AS_QD=30.12;BaseQRankSum=2.619;DP=125;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=30.12;ReadPosRankSum=-0.358;SOR=1.318;VarDP=69 GT:AD:DP:GQ:MIN_DP:PL:SB 1:2,67:69:99:.:2078,0:1,1,25,42 0/0:.:69:34:56:0,34,1251 +chrX 2472692 . C A 650 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=14.17;BaseQRankSum=0.472;DP=115;ExcessHet=0.0000;FS=4.168;MQ=59.67;MQRankSum=0;QD=14.17;ReadPosRankSum=-1.012;SOR=1.320;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,1800 0/1:23,25:48:99:.:680,0,656:12,11,9,16 +chrX 2472815 . T C 1890 . AC=1;AF=0.333;AN=3;AS_AltDP=58;AS_QD=33.10;DP=109;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.10;SOR=1.085;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,58:58:99:.:1920,0:0,0,34,24 0/0:.:51:68:51:0,68,1007 +chrX 2472856 . T C 2930 . AC=1;AF=0.333;AN=3;AS_AltDP=67;AS_QD=33.19;DP=119;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.18;SOR=0.990;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,67:67:99:.:2960,0:0,0,38,29 0/0:.:51:68:51:0,68,1007 +chrX 2472874 . G C 3059 . AC=1;AF=0.333;AN=3;AS_AltDP=71;AS_QD=31.97;DP=122;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.51;SOR=0.971;VarDP=71 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,71:71:99:.:3089,0:0,0,40,31 0/0:.:51:68:51:0,68,1007 +chrX 2472908 . A G 2028 . AC=1;AF=0.333;AN=3;AS_AltDP=66;AS_QD=31.18;DP=118;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.18;SOR=0.818;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,66:66:99:.:2058,0:0,0,35,31 0/0:.:51:68:51:0,68,1007 +chrX 2472981 . T C 2467 . AC=1;AF=0.333;AN=3;AS_AltDP=56;AS_QD=29.28;DP=110;ExcessHet=0.0000;FS=0.000;MQ=57.90;QD=44.59;SOR=1.101;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,56:56:99:.:2497,0:0,0,23,33 0/0:.:51:68:51:0,68,1007 +chrX 2472988 . G A 2433 . AC=1;AF=0.333;AN=3;AS_AltDP=55;AS_QD=30.11;DP=106;ExcessHet=0.0000;FS=0.000;MQ=57.74;QD=44.78;SOR=1.061;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,55:55:99:.:2463,0:0,0,23,32 0/0:.:51:68:51:0,68,1007 +chrX 2473026 . A C 2169 . AC=1;AF=0.333;AN=3;AS_AltDP=50;AS_QD=26.78;DP=101;ExcessHet=0.0000;FS=0.000;MQ=53.61;QD=43.98;SOR=1.157;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,50:50:99:.:2199,0:0,0,20,30 0/0:.:51:68:51:0,68,1007 +chrX 2473032 . C G 2169 . AC=1;AF=0.333;AN=3;AS_AltDP=50;AS_QD=29.99;DP=101;ExcessHet=0.0000;FS=0.000;MQ=53.40;QD=43.98;SOR=1.270;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,50:50:99:.:2199,0:0,0,19,31 0/0:.:51:68:51:0,68,1007 +chrX 2473127 . T G 2187 . AC=1;AF=0.333;AN=3;AS_AltDP=50;AS_QD=32.72;DP=101;ExcessHet=0.0000;FS=0.000;MQ=52.41;QD=44.34;SOR=0.773;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,50:50:99:.:2217,0:0,0,24,26 0/0:.:51:68:51:0,68,1007 +chrX 2473133 . A C 2214 . AC=1;AF=0.333;AN=3;AS_AltDP=50;AS_QD=34.67;DP=101;ExcessHet=0.0000;FS=0.000;MQ=53.26;QD=44.88;SOR=0.773;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,50:50:99:.:2244,0:0,0,24,26 0/0:.:51:68:51:0,68,1007 +chrX 2473147 . A AT 2545.97 . AC=1;AF=0.333;AN=3;AS_AltDP=59;AS_QD=35.71;DP=110;ExcessHet=0.0000;FS=0.000;MQ=52.63;QD=43.81;SOR=0.726;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,59:59:99:.:2585,0:0,0,30,29 0/0:.:51:68:51:0,68,1007 +chrX 2473193 . C T 1764 . AC=1;AF=0.333;AN=3;AS_AltDP=57;AS_QD=31.47;DP=109;ExcessHet=0.0000;FS=0.000;MQ=52.40;QD=31.47;SOR=0.800;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,57:57:99:.:1794,0:0,0,30,27 0/0:.:51:68:51:0,68,1007 +chrX 2473255 . C A 2310 . AC=1;AF=0.333;AN=3;AS_AltDP=52;AS_QD=31.01;DP=105;ExcessHet=0.0000;FS=0.000;MQ=46.02;QD=45.00;SOR=0.770;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,52:52:99:.:2340,0:0,0,27,25 0/0:.:51:68:51:0,68,1007 +chrX 2473259 . C T 2355 . AC=1;AF=0.333;AN=3;AS_AltDP=53;AS_QD=27.16;DP=104;ExcessHet=0.0000;FS=0.000;MQ=45.37;QD=45.00;SOR=0.808;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,53:53:99:.:2385,0:0,0,28,25 0/0:.:51:68:51:0,68,1007 +chrX 2473265 . G A 2355 . AC=1;AF=0.333;AN=3;AS_AltDP=53;AS_QD=32.02;DP=104;ExcessHet=0.0000;FS=0.000;MQ=44.97;QD=45.00;SOR=0.892;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,53:53:99:.:2385,0:0,0,29,24 0/0:.:51:68:51:0,68,1007 +chrX 2473275 . C G 2220 . AC=1;AF=0.333;AN=3;AS_AltDP=50;AS_QD=27.77;DP=101;ExcessHet=0.0000;FS=0.000;MQ=43.60;QD=45.00;SOR=0.859;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,50:50:99:.:2250,0:0,0,27,23 0/0:.:51:68:51:0,68,1007 +chrX 2473290 . G A 2220 . AC=1;AF=0.333;AN=3;AS_AltDP=50;AS_QD=29.45;DP=101;ExcessHet=0.0000;FS=0.000;MQ=41.27;QD=45.00;SOR=0.693;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,50:50:99:.:2250,0:0,0,25,25 0/0:.:51:68:51:0,68,1007 +chrX 2473305 . C T 2032 . AC=1;AF=0.333;AN=3;AS_AltDP=48;AS_QD=29.10;DP=99;ExcessHet=0.0000;FS=0.000;MQ=41.26;QD=42.96;SOR=0.776;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,48:48:99:.:2062,0:0,0,23,25 0/0:.:51:68:51:0,68,1007 +chrX 2473339 . C T 2466 . AC=1;AF=0.333;AN=3;AS_AltDP=56;AS_QD=34.07;DP=108;ExcessHet=0.0000;FS=0.000;MQ=46.10;QD=44.57;SOR=0.841;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,56:56:99:.:2496,0:0,0,26,30 0/0:.:51:68:51:0,68,1007 +chrX 2473343 . G T 2432 . AC=1;AF=0.333;AN=3;AS_AltDP=55;AS_QD=28.39;DP=107;ExcessHet=0.0000;FS=0.000;MQ=45.97;QD=44.76;SOR=0.884;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,55:55:99:.:2462,0:0,0,25,30 0/0:.:51:68:51:0,68,1007 +chrX 2473349 . C A 776 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=16.45;BaseQRankSum=-1.208;DP=107;ExcessHet=0.0000;FS=1.115;MQ=60.00;MQRankSum=0;QD=16.45;ReadPosRankSum=-0.192;SOR=0.465;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:99:56:0,1691 0/1:21,28:49:99:.:806,0,583:12,9,14,14 +chrX 2473373 . T C 2480 . AC=1;AF=0.333;AN=3;AS_AltDP=56;AS_QD=27.65;DP=117;ExcessHet=0.0000;FS=0.000;MQ=48.69;QD=44.82;SOR=0.922;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,56:56:99:.:2510,0:0,0,25,31 0/0:.:64:29:59:0,29,1477 +chrX 2473375 . A G 2525 . AC=1;AF=0.333;AN=3;AS_AltDP=57;AS_QD=26.40;DP=117;ExcessHet=0.0000;FS=0.000;MQ=48.87;QD=44.82;SOR=0.960;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,57:57:99:.:2555,0:0,0,25,32 0/0:.:64:29:59:0,29,1477 +chrX 2473378 . T C 2535 . AC=1;AF=0.333;AN=3;AS_AltDP=57;AS_QD=31.80;DP=117;ExcessHet=0.0000;FS=0.000;MQ=49.07;QD=45.00;SOR=0.960;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,57:57:99:.:2565,0:0,0,25,32 0/0:.:64:29:59:0,29,1477 +chrX 2473394 . C A 2445 . AC=1;AF=0.333;AN=3;AS_AltDP=55;AS_QD=29.53;DP=115;ExcessHet=0.0000;FS=0.000;MQ=50.55;QD=45.00;SOR=1.262;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,55:55:99:.:2475,0:0,0,21,34 0/0:.:64:29:59:0,29,1477 +chrX 2473410 . A G 2409 . AC=1;AF=0.333;AN=3;AS_AltDP=55;AS_QD=35.86;DP=115;ExcessHet=0.0000;FS=0.000;MQ=51.31;QD=44.35;SOR=1.262;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,55:55:99:.:2439,0:0,0,21,34 0/0:.:64:29:59:0,29,1477 +chrX 2473487 . G C 1104 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=32.40;DP=95;ExcessHet=0.0000;FS=0.000;MQ=52.72;QD=32.40;SOR=1.885;VarDP=35 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,35:35:99:.:1134,0:0,0,10,25 0/0:.:64:29:59:0,29,1477 +chrX 2473562 . A G 902 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=36.55;DP=83;ExcessHet=0.0000;FS=0.000;MQ=50.56;QD=40.52;SOR=3.352;VarDP=23 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,23:23:99:.:932,0:0,0,3,20 0/0:.:64:29:59:0,29,1477 +chrX 2473572 . G C 624 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=27.11;DP=74;ExcessHet=0.0000;FS=0.000;MQ=43.94;QD=43.60;SOR=2.448;VarDP=15 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,15:15:99:.:654,0:0,0,3,12 0/0:.:64:29:59:0,29,1477 +chrX 2473625 . C T 479 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=31.42;DP=71;ExcessHet=0.0000;FS=0.000;MQ=36.60;QD=42.42;SOR=5.136;VarDP=12 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,12:12:99:.:509,0:0,0,0,12 0/0:.:64:29:59:0,29,1477 +chrX 2473630 . CA C 604.97 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=30.35;DP=74;ExcessHet=0.0000;FS=0.000;MQ=36.52;QD=42.93;SOR=5.549;VarDP=15 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,15:15:99:.:644,0:0,0,0,15 0/0:.:64:29:59:0,29,1477 +chrX 2473656 . G A 499 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=32.16;DP=71;ExcessHet=0.0000;FS=0.000;MQ=36.60;QD=44.08;SOR=5.136;VarDP=12 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,12:12:99:.:529,0:0,0,0,12 0/0:.:64:29:59:0,29,1477 +chrX 2473679 . G T 330 . AC=1;AF=0.333;AN=3;AS_AltDP=8;AS_QD=29.21;DP=67;ExcessHet=0.0000;FS=0.000;MQ=35.68;QD=45.00;SOR=4.407;VarDP=8 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,8:8:99:.:360,0:0,0,0,8 0/0:.:64:29:59:0,29,1477 +chrX 2473699 . C G 240 . AC=1;AF=0.333;AN=3;AS_AltDP=6;AS_QD=30.61;DP=65;ExcessHet=0.0000;FS=0.000;MQ=34.12;QD=45.00;SOR=3.912;VarDP=6 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,6:6:99:.:270,0:0,0,0,6 0/0:.:64:29:59:0,29,1477 +chrX 2473857 . G A 465 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=30.25;DP=70;ExcessHet=0.0000;FS=0.000;MQ=33.92;QD=45.00;SOR=4.977;VarDP=11 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,11:11:99:.:495,0:0,0,11,0 0/0:.:64:29:59:0,29,1477 +chrX 2473865 . G T 465 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=29.08;DP=70;ExcessHet=0.0000;FS=0.000;MQ=33.92;QD=45.00;SOR=4.977;VarDP=11 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,11:11:99:.:495,0:0,0,11,0 0/0:.:64:29:59:0,29,1477 +chrX 2473867 . C T 465 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=29.65;DP=70;ExcessHet=0.0000;FS=0.000;MQ=33.92;QD=45.00;SOR=4.977;VarDP=11 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,11:11:99:.:495,0:0,0,11,0 0/0:.:64:29:59:0,29,1477 +chrX 2473874 . A C 542 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=28.76;DP=72;ExcessHet=0.0000;FS=0.000;MQ=35.29;QD=44.00;SOR=5.283;VarDP=13 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,13:13:99:.:572,0:0,0,13,0 0/0:.:64:29:59:0,29,1477 +chrX 2473875 . T A 542 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=29.55;DP=73;ExcessHet=0.0000;FS=0.000;MQ=36.16;QD=44.00;SOR=5.283;VarDP=13 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,13:13:99:.:572,0:0,0,13,0 0/0:.:64:29:59:0,29,1477 +chrX 2473973 . C G 1494 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=24.62;DP=94;ExcessHet=0.0000;FS=0.000;MQ=41.19;QD=43.54;SOR=2.964;VarDP=35 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,35:35:99:.:1524,0:0,0,29,6 0/0:.:64:29:59:0,29,1477 +chrX 2473987 . G A 1525 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=24.51;DP=94;ExcessHet=0.0000;FS=0.000;MQ=42.94;QD=44.43;SOR=2.964;VarDP=35 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,35:35:99:.:1555,0:0,0,29,6 0/0:.:64:29:59:0,29,1477 +chrX 2474001 . C T 1860 . AC=1;AF=0.333;AN=3;AS_AltDP=42;AS_QD=29.79;DP=101;ExcessHet=0.0000;FS=0.000;MQ=47.79;QD=45.00;SOR=2.303;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,42:42:99:.:1890,0:0,0,32,10 0/0:.:64:29:59:0,29,1477 +chrX 2474004 . G C 1860 . AC=1;AF=0.333;AN=3;AS_AltDP=42;AS_QD=29.89;DP=101;ExcessHet=0.0000;FS=0.000;MQ=47.79;QD=45.00;SOR=2.303;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,42:42:99:.:1890,0:0,0,32,10 0/0:.:64:29:59:0,29,1477 +chrX 2474005 . G A 1860 . AC=1;AF=0.333;AN=3;AS_AltDP=42;AS_QD=31.14;DP=103;ExcessHet=0.0000;FS=0.000;MQ=47.55;QD=45.00;SOR=2.303;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,42:42:99:.:1890,0:0,0,32,10 0/0:.:64:29:59:0,29,1477 +chrX 2474160 . G GT 2691.97 . AC=1;AF=0.333;AN=3;AS_AltDP=62;AS_QD=27.98;DP=123;ExcessHet=0.0000;FS=0.000;MQ=57.99;QD=44.05;SOR=0.693;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,62:62:99:.:2731,0:0,0,31,31 0/0:.:64:29:59:0,29,1477 +chrX 2474169 . G A 2609 . AC=1;AF=0.333;AN=3;AS_AltDP=59;AS_QD=29.10;DP=118;ExcessHet=0.0000;FS=0.000;MQ=58.86;QD=44.73;SOR=0.726;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,59:59:99:.:2639,0:0,0,30,29 0/0:.:64:29:59:0,29,1477 +chrX 2474173 . C A 2580 . AC=1;AF=0.333;AN=3;AS_AltDP=58;AS_QD=34.08;DP=117;ExcessHet=0.0000;FS=0.000;MQ=59.17;QD=45.00;SOR=0.762;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,58:58:99:.:2610,0:0,0,28,30 0/0:.:64:29:59:0,29,1477 +chrX 2474185 . C T 2715 . AC=1;AF=0.333;AN=3;AS_AltDP=61;AS_QD=30.49;DP=120;ExcessHet=0.0000;FS=0.000;MQ=59.98;QD=45.00;SOR=0.793;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,61:61:99:.:2745,0:0,0,29,32 0/0:.:64:29:59:0,29,1477 +chrX 2474198 . T G 2850 . AC=1;AF=0.333;AN=3;AS_AltDP=64;AS_QD=27.43;DP=123;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=45.00;SOR=0.756;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,64:64:99:.:2880,0:0,0,31,33 0/0:.:64:29:59:0,29,1477 +chrX 2474214 . A C 2940 . AC=1;AF=0.333;AN=3;AS_AltDP=66;AS_QD=24.34;DP=125;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=45.00;SOR=0.754;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,66:66:99:.:2970,0:0,0,32,34 0/0:.:64:29:59:0,29,1477 +chrX 2474230 . C T 2850 . AC=1;AF=0.333;AN=3;AS_AltDP=64;AS_QD=32.22;DP=123;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=45.00;SOR=0.693;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,64:64:99:.:2880,0:0,0,32,32 0/0:.:64:29:59:0,29,1477 +chrX 2474231 . C T 2850 . AC=1;AF=0.333;AN=3;AS_AltDP=64;AS_QD=32.51;DP=123;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=45.00;SOR=0.693;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,64:64:99:.:2880,0:0,0,32,32 0/0:.:64:29:59:0,29,1477 +chrX 2474254 . A C 2803 . AC=1;AF=0.333;AN=3;AS_AltDP=65;AS_QD=36.99;DP=125;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.58;SOR=0.787;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,65:65:99:.:2833,0:0,0,31,34 0/0:.:64:29:59:0,29,1477 +chrX 2474297 . A G 1661 . AC=1;AF=0.333;AN=3;AS_AltDP=55;AS_QD=30.75;DP=116;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.75;SOR=0.804;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,55:55:99:.:1691,0:0,0,26,29 0/0:.:64:29:59:0,29,1477 +chrX 2474374 . A G 2127 . AC=1;AF=0.333;AN=3;AS_AltDP=50;AS_QD=30.70;DP=111;ExcessHet=0.0000;FS=0.000;MQ=59.78;QD=43.14;SOR=0.773;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,50:50:99:.:2157,0:0,0,24,26 0/0:.:64:29:59:0,29,1477 +chrX 2474380 . A G 2201 . AC=1;AF=0.333;AN=3;AS_AltDP=53;AS_QD=32.46;DP=113;ExcessHet=0.0000;FS=0.000;MQ=59.55;QD=42.09;SOR=0.808;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,53:53:99:.:2231,0:0,0,25,28 0/0:.:64:29:59:0,29,1477 +chrX 2474468 . A G 2018 . AC=1;AF=0.333;AN=3;AS_AltDP=48;AS_QD=28.44;BaseQRankSum=3.299;DP=111;ExcessHet=0.0000;FS=6.472;MQ=59.12;MQRankSum=2.104;QD=40.96;ReadPosRankSum=-1.036;SOR=0.398;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 1:2,48:50:99:.:2048,0:0,2,26,22 0/0:.:64:29:59:0,29,1477 +chrX 2474470 . G T 2064 . AC=1;AF=0.333;AN=3;AS_AltDP=49;AS_QD=26.73;BaseQRankSum=2.945;DP=111;ExcessHet=0.0000;FS=6.284;MQ=58.80;MQRankSum=2.134;QD=41.06;ReadPosRankSum=-0.834;SOR=0.320;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 1:2,49:51:99:.:2094,0:0,2,26,23 0/0:.:64:29:59:0,29,1477 +chrX 2474485 . G A 2300 . AC=1;AF=0.333;AN=3;AS_AltDP=54;AS_QD=25.21;BaseQRankSum=1.454;DP=116;ExcessHet=0.0000;FS=6.756;MQ=58.66;MQRankSum=1.919;QD=41.61;ReadPosRankSum=0.206;SOR=0.500;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 1:2,54:56:99:.:2330,0:0,2,30,24 0/0:.:64:29:59:0,29,1477 +chrX 2474486 . C T 2535 . AC=1;AF=0.333;AN=3;AS_AltDP=57;AS_QD=28.62;DP=116;ExcessHet=0.0000;FS=0.000;MQ=58.66;QD=45.00;SOR=0.877;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,57:57:99:.:2565,0:0,0,31,26 0/0:.:64:29:59:0,29,1477 +chrX 2474493 . A G 2504 . AC=1;AF=0.333;AN=3;AS_AltDP=57;AS_QD=24.68;DP=116;ExcessHet=0.0000;FS=0.000;MQ=58.66;QD=44.46;SOR=0.877;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,57:57:99:.:2534,0:0,0,31,26 0/0:.:64:29:59:0,29,1477 +chrX 2474495 . A C 2504 . AC=1;AF=0.333;AN=3;AS_AltDP=57;AS_QD=30.86;DP=117;ExcessHet=0.0000;FS=0.000;MQ=58.30;QD=44.46;SOR=0.877;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,57:57:99:.:2534,0:0,0,31,26 0/0:.:64:29:59:0,29,1477 +chrX 2474559 . G C 1814 . AC=1;AF=0.333;AN=3;AS_AltDP=59;AS_QD=31.25;DP=122;ExcessHet=0.0000;FS=0.000;MQ=59.84;QD=31.25;SOR=0.796;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,59:59:99:.:1844,0:0,0,28,31 0/0:.:64:29:59:0,29,1477 +chrX 2474607 . G C 2462 . AC=1;AF=0.333;AN=3;AS_AltDP=59;AS_QD=25.06;DP=120;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=42.24;SOR=1.123;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,59:59:99:.:2492,0:0,0,24,35 0/0:.:64:29:59:0,29,1477 +chrX 2474615 . G T 2440 . AC=1;AF=0.333;AN=3;AS_AltDP=58;AS_QD=28.97;DP=118;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=42.59;SOR=0.997;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,58:58:99:.:2470,0:0,0,25,33 0/0:.:64:29:59:0,29,1477 +chrX 2474650 . A C 2770 . AC=2;AF=0.667;AN=3;AS_AltDP=93;AS_QD=24.56;BaseQRankSum=-2.317;DP=118;ExcessHet=0.0000;FS=1.998;MQ=59.85;MQRankSum=0;QD=24.56;ReadPosRankSum=-1.315;SOR=0.834;VarDP=114 GT:AD:DP:GQ:PL:SB 1:0,65:65:99:2099,0:0,0,32,33 0/1:21,28:49:99:701,0,563:11,10,10,18 +chrX 2474685 . T C 2619 . AC=1;AF=0.333;AN=3;AS_AltDP=63;AS_QD=28.25;DP=133;ExcessHet=0.0000;FS=0.000;MQ=59.07;QD=42.05;SOR=0.724;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,63:63:99:.:2649,0:0,0,31,32 0/0:.:69:86:69:0,86,1558 +chrX 2474697 . G A 2432 . AC=1;AF=0.333;AN=3;AS_AltDP=57;AS_QD=32.01;DP=127;ExcessHet=0.0000;FS=0.000;MQ=58.97;QD=43.19;SOR=0.800;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,57:57:99:.:2462,0:0,0,27,30 0/0:.:69:86:69:0,86,1558 +chrX 2474736 . G A 2399 . AC=1;AF=0.333;AN=3;AS_AltDP=56;AS_QD=32.90;DP=126;ExcessHet=0.0000;FS=0.000;MQ=58.48;QD=43.38;SOR=0.922;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,56:56:99:.:2429,0:0,0,31,25 0/0:.:69:86:69:0,86,1558 +chrX 2474752 . G A 2550 . AC=1;AF=0.333;AN=3;AS_AltDP=58;AS_QD=23.53;DP=128;ExcessHet=0.0000;FS=0.000;MQ=58.90;QD=44.48;SOR=0.914;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,58:58:99:.:2580,0:0,0,32,26 0/0:.:69:86:69:0,86,1558 +chrX 2474761 . T C 2625 . AC=1;AF=0.333;AN=3;AS_AltDP=59;AS_QD=32.14;DP=128;ExcessHet=0.0000;FS=0.000;MQ=58.91;QD=45.00;SOR=1.034;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,59:59:99:.:2655,0:0,0,34,25 0/0:.:69:86:69:0,86,1558 +chrX 2474782 . A G 2715 . AC=1;AF=0.333;AN=3;AS_AltDP=61;AS_QD=33.61;DP=130;ExcessHet=0.0000;FS=0.000;MQ=58.95;QD=45.00;SOR=1.022;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,61:61:99:.:2745,0:0,0,35,26 0/0:.:69:86:69:0,86,1558 +chrX 2474800 . T C 2760 . AC=1;AF=0.333;AN=3;AS_AltDP=62;AS_QD=26.66;DP=131;ExcessHet=0.0000;FS=0.000;MQ=59.06;QD=45.00;SOR=1.057;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,62:62:99:.:2790,0:0,0,36,26 0/0:.:69:86:69:0,86,1558 +chrX 2474801 . G C 2805 . AC=1;AF=0.333;AN=3;AS_AltDP=63;AS_QD=32.50;DP=132;ExcessHet=0.0000;FS=0.000;MQ=59.08;QD=45.00;SOR=1.092;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,63:63:99:.:2835,0:0,0,37,26 0/0:.:69:86:69:0,86,1558 +chrX 2474807 . A G 3030 . AC=1;AF=0.333;AN=3;AS_AltDP=68;AS_QD=28.77;DP=137;ExcessHet=0.0000;FS=0.000;MQ=59.36;QD=45.00;SOR=1.098;VarDP=68 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,68:68:99:.:3060,0:0,0,40,28 0/0:.:69:86:69:0,86,1558 +chrX 2474834 . C G 3434 . AC=1;AF=0.333;AN=3;AS_AltDP=77;AS_QD=27.75;DP=146;ExcessHet=0.0000;FS=0.000;MQ=59.44;QD=44.99;SOR=1.150;VarDP=77 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,77:77:99:.:3464,0:0,0,46,31 0/0:.:69:86:69:0,86,1558 +chrX 2474849 . C G 3524 . AC=1;AF=0.333;AN=3;AS_AltDP=79;AS_QD=29.07;DP=148;ExcessHet=0.0000;FS=0.000;MQ=59.65;QD=44.99;SOR=1.136;VarDP=79 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,79:79:99:.:3554,0:0,0,47,32 0/0:.:69:86:69:0,86,1558 +chrX 2474854 . G A 3344 . AC=1;AF=0.333;AN=3;AS_AltDP=75;AS_QD=28.92;DP=144;ExcessHet=0.0000;FS=0.000;MQ=59.77;QD=44.99;SOR=0.955;VarDP=75 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,75:75:99:.:3374,0:0,0,42,33 0/0:.:69:86:69:0,86,1558 +chrX 2474868 . T G 3179 . AC=1;AF=0.333;AN=3;AS_AltDP=72;AS_QD=30.20;DP=141;ExcessHet=0.0000;FS=0.000;MQ=59.68;QD=44.57;SOR=0.869;VarDP=72 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,72:72:99:.:3209,0:0,0,39,33 0/0:.:69:86:69:0,86,1558 +chrX 2474873 . C T 3179 . AC=1;AF=0.333;AN=3;AS_AltDP=72;AS_QD=31.05;DP=144;ExcessHet=0.0000;FS=0.000;MQ=59.69;QD=44.57;SOR=0.869;VarDP=72 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,72:72:99:.:3209,0:0,0,39,33 0/0:.:69:86:69:0,86,1558 +chrX 2474987 . A C 2494 . AC=1;AF=0.333;AN=3;AS_AltDP=57;AS_QD=28.29;DP=129;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.28;SOR=1.140;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,57:57:99:.:2524,0:0,0,23,34 0/0:.:69:86:69:0,86,1558 +chrX 2474988 . T C 2494 . AC=1;AF=0.333;AN=3;AS_AltDP=57;AS_QD=30.96;DP=129;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.28;SOR=1.140;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,57:57:99:.:2524,0:0,0,23,34 0/0:.:69:86:69:0,86,1558 +chrX 2475038 . T C 1730 . AC=1;AF=0.333;AN=3;AS_AltDP=54;AS_QD=32.59;DP=126;ExcessHet=0.0000;FS=0.000;MQ=59.56;QD=32.59;SOR=1.220;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,54:54:99:.:1760,0:0,0,21,33 0/0:.:69:86:69:0,86,1558 +chrX 2475079 . T C 1944 . AC=1;AF=0.333;AN=3;AS_AltDP=45;AS_QD=29.70;DP=115;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.87;SOR=1.038;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,45:45:99:.:1974,0:0,0,19,26 0/0:.:69:86:69:0,86,1558 +chrX 2475087 . G A 2030 . AC=1;AF=0.333;AN=3;AS_AltDP=46;AS_QD=30.95;DP=116;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.78;SOR=1.085;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,46:46:99:.:2060,0:0,0,19,27 0/0:.:69:86:69:0,86,1558 +chrX 2475100 . G A 2130 . AC=1;AF=0.333;AN=3;AS_AltDP=48;AS_QD=34.08;DP=117;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=45.00;SOR=0.866;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,48:48:99:.:2160,0:0,0,22,26 0/0:.:69:86:69:0,86,1558 +chrX 2475115 . A G 2040 . AC=1;AF=0.333;AN=3;AS_AltDP=46;AS_QD=25.48;DP=115;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=45.00;SOR=0.780;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,46:46:99:.:2070,0:0,0,22,24 0/0:.:69:86:69:0,86,1558 +chrX 2475121 . G T 1905 . AC=1;AF=0.333;AN=3;AS_AltDP=43;AS_QD=34.31;DP=112;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=45.00;SOR=0.836;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,43:43:99:.:1935,0:0,0,20,23 0/0:.:69:86:69:0,86,1558 +chrX 2475123 . G C 1950 . AC=1;AF=0.333;AN=3;AS_AltDP=44;AS_QD=27.35;DP=113;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=45.00;SOR=0.784;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,44:44:99:.:1980,0:0,0,21,23 0/0:.:69:86:69:0,86,1558 +chrX 2475124 . AC A 1895.97 . AC=1;AF=0.333;AN=3;AS_AltDP=43;AS_QD=32.27;DP=112;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=45.00;SOR=0.739;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,43:43:99:.:1935,0:0,0,21,22 0/0:.:69:86:69:0,86,1558 +chrX 2475140 . G C 1874 . AC=1;AF=0.333;AN=3;AS_AltDP=43;AS_QD=32.92;DP=115;ExcessHet=0.0000;FS=0.000;MQ=59.86;QD=44.28;SOR=0.836;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,43:43:99:.:1904,0:0,0,20,23 0/0:.:69:86:69:0,86,1558 +chrX 2475175 . T G 1995 . AC=1;AF=0.333;AN=3;AS_AltDP=45;AS_QD=32.64;DP=114;ExcessHet=0.0000;FS=0.000;MQ=58.80;QD=45.00;SOR=0.829;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,45:45:99:.:2025,0:0,0,21,24 0/0:.:69:86:69:0,86,1558 +chrX 2475176 . C G 2040 . AC=1;AF=0.333;AN=3;AS_AltDP=46;AS_QD=35.67;DP=115;ExcessHet=0.0000;FS=0.000;MQ=58.83;QD=45.00;SOR=0.874;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,46:46:99:.:2070,0:0,0,21,25 0/0:.:69:86:69:0,86,1558 +chrX 2475198 . A G 1985 . AC=1;AF=0.333;AN=3;AS_AltDP=45;AS_QD=28.71;DP=114;ExcessHet=0.0000;FS=0.000;MQ=58.80;QD=44.78;SOR=0.737;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,45:45:99:.:2015,0:0,0,22,23 0/0:.:69:86:69:0,86,1558 +chrX 2475216 . T C 2204 . AC=1;AF=0.333;AN=3;AS_AltDP=51;AS_QD=38.92;DP=120;ExcessHet=0.0000;FS=0.000;MQ=58.74;QD=43.80;SOR=0.813;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,51:51:99:.:2234,0:0,0,24,27 0/0:.:69:86:69:0,86,1558 +chrX 2475242 . TA T 1603.97 . AC=1;AF=0.333;AN=3;AS_AltDP=44;AS_QD=27.57;DP=114;ExcessHet=0.0000;FS=0.000;MQ=59.66;QD=37.34;SOR=0.883;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,44:44:99:.:1643,0:0,0,20,24 0/0:.:69:86:69:0,86,1558 +chrX 2475269 . A AC 1698.97 . AC=1;AF=0.333;AN=3;AS_AltDP=43;AS_QD=32.64;DP=113;ExcessHet=0.0000;FS=0.000;MQ=59.65;QD=40.42;SOR=0.836;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,43:43:99:.:1738,0:0,0,20,23 0/0:.:69:86:69:0,86,1558 +chrX 2475299 . A G 1728 . AC=1;AF=0.333;AN=3;AS_AltDP=41;AS_QD=30.65;DP=111;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=42.88;SOR=0.741;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,41:41:99:.:1758,0:0,0,21,20 0/0:.:69:86:69:0,86,1558 +chrX 2475305 . T C 1627 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=27.29;DP=109;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.61;SOR=0.914;VarDP=38 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,38:38:99:.:1657,0:0,0,21,17 0/0:.:69:86:69:0,86,1558 +chrX 2475354 . A G 1864 . AC=1;AF=0.333;AN=3;AS_AltDP=43;AS_QD=29.07;DP=115;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.05;SOR=1.179;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,43:43:99:.:1894,0:0,0,17,26 0/0:.:69:86:69:0,86,1558 +chrX 2475360 . A C 1984 . AC=1;AF=0.333;AN=3;AS_AltDP=45;AS_QD=27.23;DP=114;ExcessHet=0.0000;FS=0.000;MQ=59.76;QD=44.76;SOR=1.038;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,45:45:99:.:2014,0:0,0,19,26 0/0:.:69:86:69:0,86,1558 +chrX 2475395 . A G 1995 . AC=1;AF=0.333;AN=3;AS_AltDP=45;AS_QD=28.59;DP=114;ExcessHet=0.0000;FS=0.000;MQ=59.76;QD=45.00;SOR=0.737;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,45:45:99:.:2025,0:0,0,23,22 0/0:.:69:86:69:0,86,1558 +chrX 2475399 . AG A,GG 2561 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=42,29;AS_QD=24.87,11.13;BaseQRankSum=-0.139;DP=106;ExcessHet=0.0000;FS=0.000;MQ=59.85;MQRankSum=0.955;QD=24.68;ReadPosRankSum=1.159;SOR=0.718;VarDP=105 GT:AD:DP:GQ:PL:SB 1:0,42,0:42:99:1890,0,1890:0,0,22,20 0/2:34,0,29:63:99:701,802,1770,0,968,882:19,15,18,11 +chrX 2475404 . C T 1850 . AC=1;AF=0.333;AN=3;AS_AltDP=42;AS_QD=28.01;DP=107;ExcessHet=0.0000;FS=0.000;MQ=59.74;QD=44.76;SOR=0.788;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,42:42:99:.:1880,0:0,0,22,20 0/0:.:65:89:65:0,89,1369 +chrX 2475443 . T A 1907 . AC=1;AF=0.333;AN=3;AS_AltDP=45;AS_QD=26.88;DP=110;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.04;SOR=1.559;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,45:45:99:.:1937,0:0,0,30,15 0/0:.:65:89:65:0,89,1369 +chrX 2475455 . C A 1828 . AC=1;AF=0.333;AN=3;AS_AltDP=42;AS_QD=29.68;DP=108;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.24;SOR=1.556;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,42:42:99:.:1858,0:0,0,28,14 0/0:.:65:89:65:0,89,1369 +chrX 2475491 . A G 1816 . AC=1;AF=0.333;AN=3;AS_AltDP=43;AS_QD=32.65;DP=109;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=42.93;SOR=1.312;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,43:43:99:.:1846,0:0,0,27,16 0/0:.:65:89:65:0,89,1369 +chrX 2475494 . G C 1814 . AC=1;AF=0.333;AN=3;AS_AltDP=42;AS_QD=31.15;DP=108;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.90;SOR=1.402;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,42:42:99:.:1844,0:0,0,27,15 0/0:.:65:89:65:0,89,1369 +chrX 2475564 . G T 1457 . AC=1;AF=0.333;AN=3;AS_AltDP=46;AS_QD=31.64;BaseQRankSum=2.537;DP=129;ExcessHet=0.0000;FS=3.104;MQ=59.95;MQRankSum=0;QD=31.64;ReadPosRankSum=0.922;SOR=0.359;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,46:47:99:.:1487,0:0,1,24,22 0/0:.:65:89:65:0,89,1369 +chrX 2476240 . A AC 2320.97 . AC=2;AF=0.667;AN=3;AS_AltDP=85;AS_QD=21.85;BaseQRankSum=-0.294;DP=123;ExcessHet=0.0000;FS=0.000;MQ=59.79;MQRankSum=0;QD=21.85;ReadPosRankSum=3.37;SOR=0.766;VarDP=108 GT:AD:DP:GQ:PL:SB 1:1,58:59:99:1699,0:0,1,24,29 0/1:22,27:49:99:661,0,656:11,11,12,13 +chrX 2476642 . A G 2810 . AC=2;AF=0.667;AN=3;AS_AltDP=98;AS_QD=21.35;BaseQRankSum=-1.728;DP=138;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=21.35;ReadPosRankSum=1.41;SOR=0.624;VarDP=133 GT:AD:DP:GQ:PL:SB 1:0,73:73:99:2256,0:0,0,41,32 0/1:35,25:60:99:584,0,1006:20,15,13,12 +chrX 2477280 . C G 1677 . AC=1;AF=0.333;AN=3;AS_AltDP=61;AS_QD=25.48;BaseQRankSum=-0.756;DP=127;ExcessHet=0.0000;FS=11.152;MQ=58.15;MQRankSum=8.135;QD=25.48;ReadPosRankSum=-2.153;SOR=0.040;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 1:6,61:67:99:.:1707,0:6,0,36,25 0/0:.:60:99:60:0,104,1286 +chrX 2477455 . G A 2336 . AC=2;AF=0.667;AN=3;AS_AltDP=82;AS_QD=19.72;BaseQRankSum=2.018;DP=121;ExcessHet=0.0000;FS=2.518;MQ=59.03;MQRankSum=6.598;QD=19.72;ReadPosRankSum=-1.133;SOR=0.765;VarDP=120 GT:AD:DP:GQ:PL:SB 1:8,53:61:99:1556,0:4,4,30,23 0/1:30,29:59:99:810,0,785:14,16,14,15 +chrX 2477767 . C T 593 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=13.26;BaseQRankSum=0.438;DP=129;ExcessHet=0.0000;FS=1.134;MQ=47.59;MQRankSum=-0.598;QD=13.26;ReadPosRankSum=0.319;SOR=0.490;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:80:99:80:0,165 0/1:24,23:47:99:.:623,0,649:9,15,10,13 +chrX 2478195 . C G 3902 . AC=2;AF=0.667;AN=3;AS_AltDP=117;AS_QD=27.12;BaseQRankSum=-0.236;DP=150;ExcessHet=0.0000;FS=8.603;MQ=51.50;MQRankSum=-0.718;QD=27.12;ReadPosRankSum=0.615;SOR=1.244;VarDP=145 GT:AD:DP:GQ:PL:SB 1:0,87:87:99:3114,0:0,0,30,57 0/1:28,30:58:99:818,0,759:15,13,14,16 +chrX 2478226 . G C 4752 . AC=3;AF=1.00;AN=3;AS_AltDP=140;AS_QD=34.16;DP=145;ExcessHet=0.0000;FS=0.000;MQ=50.83;QD=34.16;SOR=0.945;VarDP=140 GT:AD:DP:GQ:PL:SB 1:0,85:85:99:2991,0:0,0,31,54 1/1:0,55:55:99:1791,164,0:0,0,31,24 +chrX 2478609 . C CATGTGGCCCTGGGACATCCACAGTGTACACACTGAAGACATTCCCTAAGA 4132.97 . AC=2;AF=0.667;AN=3;AS_AltDP=101;AS_QD=34.48;BaseQRankSum=-1.319;DP=139;ExcessHet=0.0000;FS=0.000;MQ=59.58;MQRankSum=0;QD=34.48;ReadPosRankSum=-3.481;SOR=0.713;VarDP=121 GT:AD:DP:GQ:PL:SB 1:0,68:68:99:2953,0:0,0,36,32 0/1:20,33:53:99:1219,0,692:10,10,15,18 +chrX 2478653 . A G 2370 . AC=2;AF=0.667;AN=3;AS_AltDP=82;AS_QD=22.22;BaseQRankSum=-1.093;DP=121;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=22.22;ReadPosRankSum=1.865;SOR=0.646;VarDP=108 GT:AD:DP:GQ:PL:SB 1:0,52:52:99:1635,0:0,0,28,24 0/1:26,30:56:99:765,0,696:14,12,15,15 +chrX 2478742 . C T 2821 . AC=2;AF=0.667;AN=3;AS_AltDP=90;AS_QD=25.68;BaseQRankSum=-1.677;DP=111;ExcessHet=0.0000;FS=1.955;MQ=60.00;MQRankSum=0;QD=25.68;ReadPosRankSum=0.681;SOR=0.498;VarDP=111 GT:AD:DP:GQ:PL:SB 1:0,59:59:99:1970,0:0,0,28,31 0/1:21,31:52:99:881,0,570:9,12,16,15 +chrX 2478806 . G A 2990 . AC=2;AF=0.667;AN=3;AS_AltDP=97;AS_QD=25.38;BaseQRankSum=0.117;DP=123;ExcessHet=0.0000;FS=6.238;MQ=60.00;MQRankSum=0;QD=25.38;ReadPosRankSum=0.724;SOR=0.460;VarDP=119 GT:AD:DP:GQ:PL:SB 1:0,69:69:99:2248,0:0,0,32,37 0/1:22,28:50:99:772,0,560:14,8,14,14 +chrX 2478880 . G C 3289 . AC=2;AF=0.667;AN=3;AS_AltDP=108;AS_QD=23.71;BaseQRankSum=2.448;DP=143;ExcessHet=0.0000;FS=0.757;MQ=60.00;MQRankSum=0;QD=23.71;ReadPosRankSum=0.491;SOR=0.841;VarDP=140 GT:AD:DP:GQ:PL:SB 1:0,79:79:99:2495,0:0,0,46,33 0/1:32,29:61:99:824,0,854:17,15,15,14 +chrX 2478959 . C G 2714 . AC=2;AF=0.667;AN=3;AS_AltDP=89;AS_QD=21.95;BaseQRankSum=1.095;DP=128;ExcessHet=0.0000;FS=2.580;MQ=59.79;MQRankSum=0;QD=21.95;ReadPosRankSum=-0.528;SOR=1.022;VarDP=125 GT:AD:DP:GQ:PL:SB 1:0,62:62:99:2039,0:0,0,36,26 0/1:36,27:63:99:705,0,965:18,18,15,12 +chrX 2479022 . T A 193 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=4.13;BaseQRankSum=0.464;DP=122;ExcessHet=0.0000;FS=1.055;MQ=60.00;MQRankSum=0;QD=4.13;ReadPosRankSum=-0.026;SOR=0.976;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 1:24,30:54:99:.:223,0:12,12,17,13 0/0:.:63:52:63:0,52,1523 +chrX 2479037 . G A 2241 . AC=1;AF=0.333;AN=3;AS_AltDP=60;AS_QD=32.65;DP=126;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=37.85;SOR=0.760;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,60:60:99:.:2271,0:0,0,29,31 0/0:.:63:52:63:0,52,1523 +chrX 2479361 . C A 1359 . AC=1;AF=0.333;AN=3;AS_AltDP=43;AS_QD=32.30;DP=124;ExcessHet=0.0000;FS=0.000;MQ=59.75;QD=32.30;SOR=1.455;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,43:43:99:.:1389,0:0,0,15,28 0/0:.:65:42:65:0,42,1588 +chrX 2479863 . G T 1826 . AC=1;AF=0.333;AN=3;AS_AltDP=61;AS_QD=28.55;BaseQRankSum=3.841;DP=139;ExcessHet=0.0000;FS=12.748;MQ=60.00;MQRankSum=0;QD=28.55;ReadPosRankSum=-0.819;SOR=0.347;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 1:4,61:65:99:.:1856,0:0,4,33,28 0/0:.:71:68:71:0,68,1800 +chrX 2480021 . G A 2919 . AC=2;AF=0.667;AN=3;AS_AltDP=94;AS_QD=24.17;BaseQRankSum=0.166;DP=126;ExcessHet=0.0000;FS=6.936;MQ=60.00;MQRankSum=0;QD=24.17;ReadPosRankSum=1.01;SOR=0.289;VarDP=122 GT:AD:DP:GQ:PL:SB 1:0,63:63:99:2089,0:0,0,34,29 0/1:28,31:59:99:860,0,756:10,18,13,18 +chrX 2480076 . GC G 2390.97 . AC=1;AF=0.333;AN=3;AS_AltDP=66;AS_QD=31.67;BaseQRankSum=-0.427;DP=125;ExcessHet=0.0000;FS=4.281;MQ=60.00;MQRankSum=0;QD=36.27;ReadPosRankSum=1.423;SOR=1.166;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,66:67:99:.:2430,0:0,1,42,24 0/0:.:54:61:54:0,61,945 +chrX 2480280 . T C 510 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=18.00;BaseQRankSum=-0.475;DP=115;ExcessHet=0.0000;FS=0.000;MQ=57.24;MQRankSum=0.026;QD=18.00;ReadPosRankSum=0.409;SOR=0.527;VarDP=30 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:84:99:84:0,1800 0/1:11,19:30:99:.:540,0,282:4,7,8,11 +chrX 2480289 . G A 1535 . AC=1;AF=0.333;AN=3;AS_AltDP=60;AS_QD=21.15;BaseQRankSum=0.105;DP=111;ExcessHet=0.0000;FS=14.162;MQ=55.10;MQRankSum=4.456;QD=21.15;ReadPosRankSum=2.478;SOR=0.076;VarDP=74 GT:AD:DP:GQ:MIN_DP:PL:SB 1:14,60:74:99:.:1565,0:2,12,27,33 0/0:.:36:40:36:0,40,790 +chrX 2480499 . T G 529 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=15.11;BaseQRankSum=1.372;DP=109;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=15.11;ReadPosRankSum=0.291;SOR=0.566;VarDP=37 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:70:99:70:0,1800 0/1:16,21:37:99:.:559,0,385:7,9,10,11 +chrX 2480516 . TAA T,TA 1647.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=14,56;AS_QD=10.28,18.35;BaseQRankSum=1.04;DP=120;ExcessHet=0.0000;FS=5.370;MQ=60.00;MQRankSum=0;QD=19.17;ReadPosRankSum=0.883;SOR=0.697;VarDP=88 GT:AD:DP:GQ:PL:SB 2:1,2,56:59:99:1358,1534,0:1,0,32,26 0/1:17,12,0:29:99:329,0,446,380,483,862:6,11,7,5 +chrX 2480627 . G A 541 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=13.28;BaseQRankSum=-1.175;DP=113;ExcessHet=0.0000;FS=18.042;MQ=60.00;MQRankSum=0;QD=13.28;ReadPosRankSum=0.109;SOR=3.401;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:70:99:70:0,1800 0/1:21,22:43:99:.:571,0,581:12,9,20,2 +chrX 2481096 . T C 1964 . AC=1;AF=0.333;AN=3;AS_AltDP=63;AS_QD=31.65;DP=139;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.65;SOR=0.724;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,63:63:99:.:1994,0:0,0,31,32 0/0:.:72:99:72:0,105,1385 +chrX 2481162 . C T 4751 . AC=3;AF=1.00;AN=3;AS_AltDP=144;AS_QD=33.20;DP=150;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.20;SOR=1.079;VarDP=144 GT:AD:DP:GQ:PL:SB 1:0,74:74:99:2431,0:0,0,33,41 1/1:0,70:70:99:2350,211,0:0,0,27,43 +chrX 2481437 . G A 2103 . AC=1;AF=0.333;AN=3;AS_AltDP=65;AS_QD=32.82;DP=122;ExcessHet=0.0000;FS=0.000;MQ=59.63;QD=32.82;SOR=1.078;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,65:65:99:.:2133,0:0,0,27,38 0/0:.:56:99:56:0,109,1552 +chrX 2481779 . T C 2310 . AC=2;AF=0.667;AN=3;AS_AltDP=82;AS_QD=20.35;BaseQRankSum=-1.736;DP=118;ExcessHet=0.0000;FS=0.773;MQ=56.25;MQRankSum=-3.238;QD=20.35;ReadPosRankSum=0.01;SOR=0.816;VarDP=115 GT:AD:DP:GQ:PL:SB 1:0,63:63:99:1921,0:0,0,36,27 0/1:33,19:52:99:419,0,951:18,15,11,8 +chrX 2481815 . C T 2481 . AC=1;AF=0.333;AN=3;AS_AltDP=58;AS_QD=28.14;DP=114;ExcessHet=0.0000;FS=0.000;MQ=54.09;QD=43.29;SOR=0.836;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,58:58:99:.:2511,0:0,0,31,27 0/0:.:56:99:56:0,120,1800 +chrX 2481827 . AC A 3005.97 . AC=2;AF=0.667;AN=3;AS_AltDP=76;AS_QD=27.19;BaseQRankSum=0.878;DP=116;ExcessHet=0.0000;FS=2.616;MQ=55.97;MQRankSum=-3.919;QD=27.19;ReadPosRankSum=-1.103;SOR=0.567;VarDP=112 GT:AD:DP:GQ:PL:SB 1:0,56:56:99:2466,0:0,0,30,26 0/1:36,20:56:99:579,0,1161:16,20,9,11 +chrX 2482036 . T C 1741 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=19.25;BaseQRankSum=1.714;DP=93;ExcessHet=0.0000;FS=4.090;MQ=43.03;MQRankSum=-6.038;QD=19.25;ReadPosRankSum=-1.126;SOR=0.503;VarDP=92 GT:AD:DP:GQ:PL:SB 1:0,40:40:99:1321,0:0,0,14,26 0/1:34,18:52:99:450,0,975:20,14,14,4 +chrX 2482129 . C CTTT,CTT 2071.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=38,25;AS_QD=23.66,13.14;BaseQRankSum=0.412;DP=108;ExcessHet=0.0000;FS=6.362;MQ=48.61;MQRankSum=-4.298;QD=24.26;ReadPosRankSum=0.75;SOR=0.561;VarDP=87 GT:AD:DP:GQ:PL:SB 1:0,38,0:38:99:1467,0,1468:0,0,18,20 0/2:24,0,25:49:99:644,716,1453,0,737,662:9,15,16,9 +chrX 2482579 . T A 2613 . AC=2;AF=0.667;AN=3;AS_AltDP=84;AS_QD=22.78;BaseQRankSum=1.753;DP=122;ExcessHet=0.0000;FS=0.777;MQ=59.97;MQRankSum=0;QD=22.78;ReadPosRankSum=-0.11;SOR=0.816;VarDP=116 GT:AD:DP:GQ:PL:SB 1:0,58:58:99:1933,0:0,0,28,30 0/1:32,26:58:99:710,0,842:15,17,9,17 +chrX 2482616 . T C 2534 . AC=2;AF=0.667;AN=3;AS_AltDP=84;AS_QD=22.69;BaseQRankSum=-0.272;DP=116;ExcessHet=0.0000;FS=0.805;MQ=59.85;MQRankSum=0;QD=22.69;ReadPosRankSum=1.537;SOR=0.823;VarDP=113 GT:AD:DP:GQ:PL:SB 1:1,61:62:99:1995,0:1,0,35,26 0/1:28,23:51:99:569,0,759:14,14,11,12 +chrX 2482794 . G A 2713 . AC=2;AF=0.667;AN=3;AS_AltDP=89;AS_QD=24.71;BaseQRankSum=-0.949;DP=116;ExcessHet=0.0000;FS=0.906;MQ=53.91;MQRankSum=0.376;QD=24.71;ReadPosRankSum=-0.894;SOR=0.527;VarDP=111 GT:AD:DP:GQ:PL:SB 1:0,58:58:99:1905,0:0,0,27,31 0/1:22,31:53:99:838,0,555:9,13,14,17 +chrX 2482868 . A G 425 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=11.38;BaseQRankSum=1.12;DP=112;ExcessHet=0.0000;FS=5.014;MQ=45.05;MQRankSum=-4.937;QD=11.38;ReadPosRankSum=-0.643;SOR=1.765;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:71:99:71:0,1260 0/1:23,17:40:99:.:455,0,624:10,13,4,13 +chrX 2483063 . CA C 881.97 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=18.42;BaseQRankSum=-1.342;DP=123;ExcessHet=0.0000;FS=0.000;MQ=58.62;MQRankSum=-0.982;QD=18.42;ReadPosRankSum=-0.561;SOR=0.583;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:71:99:71:0,1260 0/1:21,29:50:99:.:921,0,635:13,8,17,12 +chrX 2483328 . T G 2565 . AC=2;AF=0.667;AN=3;AS_AltDP=85;AS_QD=23.17;BaseQRankSum=-0.956;DP=117;ExcessHet=0.0000;FS=4.114;MQ=60.00;MQRankSum=0;QD=23.17;ReadPosRankSum=-0.143;SOR=0.435;VarDP=112 GT:AD:DP:GQ:PL:SB 1:0,57:57:99:1861,0:0,0,28,29 0/1:27,28:55:99:734,0,729:16,11,14,14 +chrX 2483424 . T A 2543 . AC=2;AF=0.667;AN=3;AS_AltDP=82;AS_QD=22.57;BaseQRankSum=1.732;DP=120;ExcessHet=0.0000;FS=16.659;MQ=60.00;MQRankSum=0;QD=22.57;ReadPosRankSum=-0.766;SOR=1.107;VarDP=114 GT:AD:DP:GQ:PL:SB 1:0,56:56:99:1864,0:0,0,34,22 0/1:32,26:58:99:709,0,857:12,20,17,9 +chrX 2483789 . CAAAAA C 2754.97 . AC=2;AF=0.667;AN=3;AS_AltDP=67;AS_QD=34.49;BaseQRankSum=-0.866;DP=109;ExcessHet=0.0000;FS=0.000;MQ=59.91;MQRankSum=0;QD=34.49;ReadPosRankSum=0.669;SOR=0.647;VarDP=81 GT:AD:DP:GQ:PL:SB 1:1,48:49:99:2070,0:0,1,22,26 0/1:13,19:32:99:724,0,410:6,7,8,11 +chrX 2483831 . G C 3585 . AC=2;AF=0.667;AN=3;AS_AltDP=86;AS_QD=34.43;BaseQRankSum=0.593;DP=108;ExcessHet=0.0000;FS=2.122;MQ=60.00;MQRankSum=0;QD=34.43;ReadPosRankSum=0.152;SOR=0.505;VarDP=105 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,63:63:99:.:.:2728,0:.:0,0,32,31 0|1:19,23:42:99:0|1:2483831_G_C:887,0,708:2483831:8,11,12,11 +chrX 2483853 . C T 3878 . AC=2;AF=0.667;AN=3;AS_AltDP=90;AS_QD=30.23;BaseQRankSum=-0.727;DP=111;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=35.21;ReadPosRankSum=-1.071;SOR=0.738;VarDP=111 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,67:67:99:.:.:3005,0:.:0,0,37,30 0|1:21,23:44:99:0|1:2483831_G_C:903,0,813:2483831:11,10,11,12 +chrX 2483876 . G A 3965 . AC=2;AF=0.667;AN=3;AS_AltDP=92;AS_QD=34.74;BaseQRankSum=1.316;DP=115;ExcessHet=0.0000;FS=0.873;MQ=60.00;MQRankSum=0;QD=34.74;ReadPosRankSum=-2.123;SOR=0.836;VarDP=115 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,67:67:99:.:.:3015,0:.:0,0,38,29 0|1:23,25:48:99:0|1:2483831_G_C:980,0,879:2483831:12,11,13,12 +chrX 2483879 . C A 3920 . AC=2;AF=0.667;AN=3;AS_AltDP=91;AS_QD=34.65;BaseQRankSum=-0.641;DP=116;ExcessHet=0.0000;FS=0.882;MQ=60.00;MQRankSum=0;QD=34.65;ReadPosRankSum=-1.65;SOR=0.863;VarDP=114 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,66:66:99:.:.:2970,0:.:0,0,38,28 0|1:23,25:48:99:0|1:2483831_G_C:980,0,879:2483831:12,11,13,12 +chrX 2484015 . G A 1976 . AC=1;AF=0.333;AN=3;AS_AltDP=60;AS_QD=33.43;DP=126;ExcessHet=0.0000;FS=0.000;MQ=59.85;QD=33.43;SOR=0.760;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,60:60:99:.:2006,0:0,0,31,29 0/0:.:64:99:64:0,107,1598 +chrX 2484111 . T G 3710 . AC=3;AF=1.00;AN=3;AS_AltDP=117;AS_QD=31.97;DP=120;ExcessHet=0.0000;FS=0.000;MQ=59.83;QD=31.97;SOR=0.745;VarDP=117 GT:AD:DP:GQ:PL:SB 1:0,67:67:99:2183,0:0,0,34,33 1/1:0,50:50:99:1557,149,0:0,0,26,24 +chrX 2484263 . A G 2428 . AC=2;AF=0.667;AN=3;AS_AltDP=81;AS_QD=20.15;BaseQRankSum=-1.032;DP=128;ExcessHet=0.0000;FS=2.477;MQ=60.00;MQRankSum=0;QD=20.15;ReadPosRankSum=0.959;SOR=0.469;VarDP=122 GT:AD:DP:GQ:PL:SB 1:0,55:55:99:1796,0:0,0,25,30 0/1:41,26:67:99:662,0,1193:17,24,14,12 +chrX 2484823 . G C 2189 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=36.48;DP=119;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=36.98;SOR=0.831;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,1101 1/1:0,60:60:99:.:2219,180,0:0,0,32,28 +chrX 2484843 . C T 787 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=7.04;BaseQRankSum=0.692;DP=118;ExcessHet=0.0000;FS=12.019;MQ=60.00;MQRankSum=0;QD=7.04;ReadPosRankSum=-0.034;SOR=0.959;VarDP=116 GT:AD:DP:GQ:PL:SB 1:27,28:55:42:42,0:11,16,16,12 0/1:32,29:61:99:775,0,854:13,19,18,11 +chrX 2484904 . A G 3918 . AC=3;AF=1.00;AN=3;AS_AltDP=122;AS_QD=32.36;DP=124;ExcessHet=0.0000;FS=0.000;MQ=59.91;QD=32.36;SOR=1.071;VarDP=122 GT:AD:DP:GQ:PL:SB 1:0,65:65:99:2138,0:0,0,27,38 1/1:0,57:57:99:1810,170,0:0,0,24,33 +chrX 2485067 . A C 1776 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=32.25;DP=121;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.25;SOR=0.841;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,555 1/1:0,56:56:99:.:1806,168,0:0,0,26,30 +chrX 2485643 . A G 210 . AC=2;AF=0.667;AN=3;AS_AltDP=8;AS_QD=30.00;DP=38;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.00;SOR=4.407;VarDP=8 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:27:6:27:0,6 1/1:0,8:8:24:.:240,24,0:0,0,8,0 +chrX 2485729 . G A 217 . AC=1;AF=0.333;AN=3;AS_AltDP=10;AS_QD=20.58;DP=28;ExcessHet=0.0000;FS=0.000;MQ=58.92;QD=20.58;SOR=1.085;VarDP=12 GT:AD:DP:GQ:MIN_DP:PL:SB 1:2,10:12:99:.:247,0:0,0,6,4 0/0:.:18:36:13:0,36,412 +chrX 2485741 . AGAAGGGAGGGAAGGAAGGGAGAGAAGGAAGGAAGGGAGAAAAGGGAGAGAAGGGAGAGAAGGAAG A 612.97 . AC=2;AF=0.667;AN=3;AS_AltDP=15;AS_QD=33.46;DP=87;ExcessHet=0.0000;FS=0.000;MQ=58.92;QD=43.47;SOR=5.136;VarDP=15 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:59:99:59:.:.:0,192 1|1:0,15:15:50:.:0|1:2485741_AGAAGGGAGGGAAGGAAGGGAGAGAAGGAAGGAAGGGAGAAAAGGGAGAGAAGGGAGAGAAGGAAG_A:652,50,0:2485741:0,0,12,0 +chrX 2485939 . G T 623 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=20.41;BaseQRankSum=-0.924;DP=93;ExcessHet=0.0000;FS=1.841;MQ=60.00;MQRankSum=0;QD=20.41;ReadPosRankSum=-0.305;SOR=1.453;VarDP=32 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,192 0/1:8,24:32:99:.:653,0,171:5,3,18,6 +chrX 2486578 . G A 1680 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=31.67;DP=114;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.67;SOR=0.767;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,192 1/1:0,54:54:99:.:1710,162,0:0,0,28,26 +chrX 2487001 . T C 2510 . AC=3;AF=1.00;AN=3;AS_AltDP=106;AS_QD=19.10;BaseQRankSum=-0.321;DP=136;ExcessHet=0.0000;FS=2.856;MQ=60.00;MQRankSum=0;QD=19.10;ReadPosRankSum=0.128;SOR=0.404;VarDP=133 GT:AD:DP:GQ:PL:SB 1:27,35:62:99:265,0:11,16,17,18 1/1:0,71:71:99:2275,213,0:0,0,36,35 +chrX 2487355 . C A 2492 . AC=2;AF=0.667;AN=3;AS_AltDP=77;AS_QD=32.33;BaseQRankSum=-0.391;DP=141;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=32.33;ReadPosRankSum=-1.666;SOR=0.255;VarDP=78 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,437 1/1:1,77:78:99:.:2522,200,0:0,1,37,40 +chrX 2488489 . A G 2246 . AC=3;AF=1.00;AN=3;AS_AltDP=97;AS_QD=18.97;BaseQRankSum=-2.488;DP=124;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=18.97;ReadPosRankSum=-0.373;SOR=0.674;VarDP=120 GT:AD:DP:GQ:PL:SB 1:23,37:60:99:356,0:11,12,14,23 1/1:0,60:60:99:1920,180,0:0,0,33,27 +chrX 2491066 . G GT 547.97 . AC=2;AF=0.667;AN=3;AS_AltDP=32;AS_QD=17.79;BaseQRankSum=1.969;DP=118;ExcessHet=0.0000;FS=0.000;MQ=58.73;MQRankSum=-0.211;QD=17.79;ReadPosRankSum=1.103;SOR=0.337;VarDP=33 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,580 1/1:1,32:33:84:.:587,84,0:0,1,14,18 +chrX 2491447 . T C 4203 . AC=3;AF=1.00;AN=3;AS_AltDP=131;AS_QD=32.31;DP=134;ExcessHet=0.0000;FS=0.000;MQ=59.93;QD=32.31;SOR=0.708;VarDP=131 GT:AD:DP:GQ:PL:SB 1:0,76:76:99:2425,0:0,0,39,37 1/1:0,55:55:99:1808,165,0:0,0,26,29 +chrX 2493751 . T C 1971 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=32.27;DP=122;ExcessHet=0.0000;FS=0.000;MQ=59.56;QD=32.27;SOR=0.758;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:23:57:0,23 1/1:0,62:62:99:.:2001,185,0:0,0,30,32 +chrX 2494572 . A G 1514 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=32.85;DP=106;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.85;SOR=0.823;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:23:57:0,23 1/1:0,47:47:99:.:1544,141,0:0,0,25,22 +chrX 2495610 . G GT 1017.97 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=15.32;BaseQRankSum=1.508;DP=128;ExcessHet=0.0000;FS=3.261;MQ=60.00;MQRankSum=0;QD=15.32;ReadPosRankSum=-0.468;SOR=0.382;VarDP=69 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:23:57:0,23 0/1:35,34:69:99:.:1057,0,1103:14,21,17,17 +chrX 2497106 . G A 765 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=11.69;BaseQRankSum=1.489;DP=127;ExcessHet=0.0000;FS=8.450;MQ=59.25;MQRankSum=-1.959;QD=11.69;ReadPosRankSum=-0.822;SOR=1.496;VarDP=68 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:23:57:0,23 0/1:38,30:68:99:.:795,0,968:18,20,20,10 +chrX 2497192 . T C 939 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=15.14;BaseQRankSum=-1.039;DP=122;ExcessHet=0.0000;FS=0.000;MQ=59.19;MQRankSum=-1.339;QD=15.14;ReadPosRankSum=1.266;SOR=0.774;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:23:57:0,23 0/1:28,36:64:99:.:969,0,741:15,13,20,16 +chrX 2498625 . G GA,GAA 444.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=24,17;AS_QD=2.22,7.54;BaseQRankSum=-0.671;DP=98;ExcessHet=0.0000;FS=6.300;MQ=59.66;MQRankSum=0.135;QD=6.72;ReadPosRankSum=-0.456;SOR=1.110;VarDP=72 GT:AD:DP:GQ:PL:SB 1:16,24,0:40:99:122,0,472:9,7,9,15 0/2:15,0,17:32:99:362,407,836,0,429,379:8,7,7,10 +chrX 2498751 . C T 449 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=10.89;BaseQRankSum=-0.641;DP=108;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=10.89;ReadPosRankSum=-0.261;SOR=0.729;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,124 0/1:25,19:44:99:.:479,0,667:12,13,10,9 +chrX 2499126 . A G 754 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=14.79;BaseQRankSum=-0.896;DP=118;ExcessHet=0.0000;FS=9.971;MQ=60.00;MQRankSum=0;QD=14.79;ReadPosRankSum=-0.535;SOR=0.954;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,124 0/1:25,28:53:99:.:784,0,700:16,9,11,17 +chrX 2499996 . A C 1189 . AC=1;AF=0.333;AN=3;AS_AltDP=43;AS_QD=18.75;BaseQRankSum=-1.435;DP=133;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=18.75;ReadPosRankSum=1.186;SOR=0.765;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,124 0/1:22,43:65:99:.:1219,0,544:9,13,17,26 +chrX 2500497 . C T 577 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=11.90;BaseQRankSum=-0.778;DP=116;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=11.90;ReadPosRankSum=-0.736;SOR=0.847;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,124 0/1:27,24:51:99:.:607,0,716:10,17,8,16 +chrX 2500642 . A AG 1838.97 . AC=3;AF=1.00;AN=3;AS_AltDP=46;AS_QD=29.73;DP=49;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=40.83;SOR=2.110;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,27:27:99:.:.:1069,0:.:0,0,8,19 1|1:0,19:19:57:0|1:2500642_A_AG:809,57,0:2500642:0,0,4,15 +chrX 2500654 . GC G 878.97 . AC=2;AF=0.667;AN=3;AS_AltDP=22;AS_QD=30.39;DP=44;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=41.73;SOR=2.737;VarDP=22 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:26:46:22:.:.:0,46 1|1:0,22:22:66:.:0|1:2500642_A_AG:918,66,0:2500642:0,0,4,18 +chrX 2500664 . C A 174 . AC=1;AF=0.333;AN=3;AS_AltDP=9;AS_QD=10.74;BaseQRankSum=-0.287;DP=43;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=10.74;ReadPosRankSum=-1.715;SOR=1.609;VarDP=19 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:21:13:21:.:.:0,13 0|1:10,9:19:99:.:0|1:2500642_A_AG:204,0,246:2500642:1,9,0,9 +chrX 2501132 . A G 381 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=14.68;BaseQRankSum=0.686;DP=77;ExcessHet=0.0000;FS=15.433;MQ=59.97;MQRankSum=1.146;QD=14.68;ReadPosRankSum=1.659;SOR=3.786;VarDP=28 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:46:99:46:0,331 0/1:13,15:28:99:.:411,0,333:6,7,1,14 +chrX 2501220 . A C,AC 46 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=3,4;AS_QD=2.57,9.50;BaseQRankSum=-0.341;DP=63;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=6.91;ReadPosRankSum=-0.361;SOR=1.270;VarDP=11 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:46:99:46:0,331,331 0/2:4,3,4:11:58:.:76,58,311,0,59,131:0,4,0,7 +chrX 2501820 . C G 664 . AC=2;AF=0.667;AN=3;AS_AltDP=37;AS_QD=11.02;BaseQRankSum=-0.576;DP=66;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=11.02;ReadPosRankSum=0.745;SOR=0.771;VarDP=63 GT:AD:DP:GQ:PL:SB 1:11,22:33:99:322,0:5,6,11,11 0/1:15,15:30:99:372,0,412:6,9,4,11 +chrX 2502351 . C G 317 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=7.54;BaseQRankSum=-1.317;DP=80;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=7.54;ReadPosRankSum=-1.287;SOR=0.786;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 1:17,29:46:99:.:347,0:9,8,16,13 0/0:.:48:32:34:0,32,901 +chrX 2502681 . A T 598 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=13.36;BaseQRankSum=1.244;DP=115;ExcessHet=0.0000;FS=1.134;MQ=60.00;MQRankSum=0;QD=13.36;ReadPosRankSum=-0.49;SOR=0.473;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,219 0/1:23,24:47:99:.:628,0,568:9,14,11,13 +chrX 2503035 . A T 1482 . AC=2;AF=0.667;AN=3;AS_AltDP=67;AS_QD=11.54;BaseQRankSum=1.281;DP=136;ExcessHet=0.0000;FS=0.645;MQ=60.00;MQRankSum=0;QD=11.54;ReadPosRankSum=1.3;SOR=0.784;VarDP=131 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:30,40:70:99:.:.:481,0:.:13,17,22,18 0|1:34,27:61:99:0|1:2503035_A_T:1031,0,1346:2503035:19,15,13,14 +chrX 2503037 . G T 1482 . AC=2;AF=0.667;AN=3;AS_AltDP=67;AS_QD=11.54;BaseQRankSum=0.15;DP=133;ExcessHet=0.0000;FS=0.645;MQ=60.00;MQRankSum=0;QD=11.54;ReadPosRankSum=1.068;SOR=0.784;VarDP=131 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:30,40:70:99:.:.:481,0:.:13,17,22,18 0|1:34,27:61:99:0|1:2503035_A_T:1031,0,1346:2503035:19,15,13,14 +chrX 2503229 . CT C 742.97 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=8.69;BaseQRankSum=1.246;DP=116;ExcessHet=0.0000;FS=4.125;MQ=59.44;MQRankSum=0.127;QD=8.69;ReadPosRankSum=-1.104;SOR=1.145;VarDP=90 GT:AD:DP:GQ:PL:SB 1:16,29:45:99:318,0:6,10,9,20 0/1:21,24:45:99:464,0,373:10,11,9,15 +chrX 2503269 . T C 2156 . AC=3;AF=1.00;AN=3;AS_AltDP=84;AS_QD=21.64;BaseQRankSum=-1.091;DP=103;ExcessHet=0.0000;FS=2.253;MQ=60.00;MQRankSum=0;QD=21.64;ReadPosRankSum=0.25;SOR=1.063;VarDP=101 GT:AD:DP:GQ:PL:SB 1:17,29:46:99:359,0:8,9,10,19 1/1:0,55:55:99:1827,165,0:0,0,23,32 +chrX 2503510 . A G 755 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=7.85;BaseQRankSum=2.202;DP=100;ExcessHet=0.0000;FS=3.729;MQ=60.00;MQRankSum=0;QD=7.85;ReadPosRankSum=0.165;SOR=0.758;VarDP=100 GT:AD:DP:GQ:PL:SB 1:24,28:52:99:139,0:10,14,17,11 0/1:25,23:48:99:646,0,640:12,13,11,12 +chrX 2504042 . TAA T 198.97 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=3.35;BaseQRankSum=0.047;DP=134;ExcessHet=0.0000;FS=10.097;MQ=60.00;MQRankSum=0;QD=3.35;ReadPosRankSum=-0.133;SOR=0.991;VarDP=71 GT:AD:DP:GQ:MIN_DP:PL:SB 1:33,38:71:99:.:238,0:13,20,23,15 0/0:.:60:99:60:0,114,1510 +chrX 2504045 . G GT 198.97 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=3.35;BaseQRankSum=-0.753;DP=135;ExcessHet=0.0000;FS=10.097;MQ=60.00;MQRankSum=0;QD=3.35;ReadPosRankSum=0.254;SOR=0.991;VarDP=71 GT:AD:DP:GQ:MIN_DP:PL:SB 1:33,38:71:99:.:238,0:13,20,23,15 0/0:.:60:99:60:0,114,1510 +chrX 2504076 . C CCTCAGGTGTGGCCAGGTGTG,CCTTG 1426.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=32,26;AS_QD=5.59,12.31;BaseQRankSum=-0.22;DP=125;ExcessHet=0.0000;FS=3.408;MQ=60.00;MQRankSum=0;QD=13.09;ReadPosRankSum=-0.3;SOR=0.584;VarDP=112 GT:AD:DP:GQ:PL:SB 1:21,32,0:53:99:481,0,1429:7,14,17,15 0/2:33,0,26:59:99:985,1085,2459,0,1375,1296:17,16,13,13 +chrX 2504105 . G A 674 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=6.07;BaseQRankSum=0.758;DP=120;ExcessHet=0.0000;FS=3.372;MQ=60.00;MQRankSum=0;QD=6.07;ReadPosRankSum=1.63;SOR=1.017;VarDP=116 GT:AD:DP:GQ:PL:SB 1:28,33:61:79:79,0:12,16,14,19 0/1:32,23:55:99:625,0,887:17,15,9,14 +chrX 2504267 . A G 277 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=5.29;BaseQRankSum=-0.479;DP=122;ExcessHet=0.0000;FS=3.708;MQ=60.00;MQRankSum=0;QD=5.29;ReadPosRankSum=0.49;SOR=0.330;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 1:24,34:58:99:.:307,0:9,15,17,17 0/0:.:62:83:62:0,83,1134 +chrX 2504742 . C A,CA 602 . AC=0,2;AF=0.00,0.667;AN=3;AS_AltDP=3,44;AS_QD=0.00,7.71;BaseQRankSum=0.29;DP=109;ExcessHet=0.0000;FS=0.000;MQ=59.85;MQRankSum=0;QD=7.44;ReadPosRankSum=0.815;SOR=0.618;VarDP=85 GT:AD:DP:GQ:PL:SB 2:19,3,24:46:99:231,1365,0:9,10,14,13 0/2:19,0,20:39:99:401,458,899,0,441,381:8,11,8,12 +chrX 2505326 . G A 634 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=10.54;BaseQRankSum=0.765;DP=129;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=10.54;ReadPosRankSum=-0.58;SOR=0.818;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,1286 0/1:37,26:63:99:.:664,0,981:23,14,17,9 +chrX 2505598 . TTTTTG T 980.97 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=19.62;BaseQRankSum=0.936;DP=136;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=19.62;ReadPosRankSum=-0.431;SOR=0.698;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,1286 0/1:25,27:52:99:.:1020,0,968:12,13,14,13 +chrX 2505691 . T C 1836 . AC=3;AF=1.00;AN=3;AS_AltDP=96;AS_QD=13.42;BaseQRankSum=2.866;DP=143;ExcessHet=0.0000;FS=0.000;MQ=59.84;MQRankSum=0.977;QD=13.42;ReadPosRankSum=2.099;SOR=0.682;VarDP=139 GT:AD:DP:GQ:PL:SB 1:43,39:82:10:10,0:23,20,19,20 1/1:0,57:57:99:1856,171,0:0,0,32,25 +chrX 2506392 . C T 243 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=6.35;BaseQRankSum=0.887;DP=108;ExcessHet=0.0000;FS=8.856;MQ=60.00;MQRankSum=0;QD=6.35;ReadPosRankSum=0;SOR=1.204;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 1:18,25:43:99:.:273,0:7,11,16,9 0/0:.:60:93:60:0,93,1548 +chrX 2507064 . CAAAT C 86.97 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=3.82;BaseQRankSum=0.251;DP=116;ExcessHet=0.0000;FS=1.356;MQ=59.91;MQRankSum=0;QD=3.82;ReadPosRankSum=-0.931;SOR=0.826;VarDP=33 GT:AD:DP:GQ:MIN_DP:PL:SB 1:15,18:33:99:.:126,0:7,8,10,8 0/0:.:60:93:60:0,93,1548 +chrX 2507388 . T TG 847.97 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=16.74;BaseQRankSum=0.465;DP=118;ExcessHet=0.0000;FS=2.432;MQ=60.00;MQRankSum=0;QD=16.74;ReadPosRankSum=1.028;SOR=0.470;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,1089 0/1:20,33:53:99:.:887,0,470:12,8,16,17 +chrX 2509159 . A AT 440.97 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=9.06;BaseQRankSum=0.308;DP=120;ExcessHet=0.0000;FS=2.359;MQ=59.89;MQRankSum=0;QD=9.06;ReadPosRankSum=0.65;SOR=1.075;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,1089 0/1:31,22:53:99:.:480,0,772:14,17,8,14 +chrX 2509269 . C T 380 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=7.59;BaseQRankSum=-1.552;DP=120;ExcessHet=0.0000;FS=6.289;MQ=60.00;MQRankSum=0;QD=7.59;ReadPosRankSum=-0.903;SOR=1.675;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 1:23,31:54:99:.:410,0:14,9,24,7 0/0:.:65:99:65:0,120,1800 +chrX 2509285 . A G 1545 . AC=2;AF=0.667;AN=3;AS_AltDP=77;AS_QD=12.30;BaseQRankSum=-1.115;DP=132;ExcessHet=0.0000;FS=11.570;MQ=59.93;MQRankSum=-0.757;QD=12.30;ReadPosRankSum=1.088;SOR=1.094;VarDP=128 GT:AD:DP:GQ:PL:SB 1:25,35:60:99:490,0:12,13,25,10 0/1:26,42:68:99:1085,0,660:10,16,22,20 +chrX 2509345 . AC A 1282.97 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=12.13;BaseQRankSum=2.291;DP=110;ExcessHet=0.0000;FS=0.000;MQ=59.96;MQRankSum=0;QD=12.13;ReadPosRankSum=0.629;SOR=0.715;VarDP=109 GT:AD:DP:GQ:PL:SB 1:22,30:52:99:301,0:9,13,16,14 0/1:25,32:57:99:1021,0,760:15,10,16,16 +chrX 2509431 . T TAAA,TAA 1330.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=36,11;AS_QD=24.18,32.68;BaseQRankSum=-0.579;DP=115;ExcessHet=0.0000;FS=8.992;MQ=58.53;MQRankSum=-0.162;QD=22.46;ReadPosRankSum=-1.124;SOR=1.048;VarDP=61 GT:AD:DP:GQ:PL:SB 1:13,27,0:40:99:451,0,950:8,5,7,20 1/2:1,9,11:21:99:919,221,161,176,0,102:1,0,11,9 +chrX 2509977 . T TA 139.97 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=9.42;BaseQRankSum=-0.088;DP=114;ExcessHet=0.0000;FS=0.000;MQ=59.16;MQRankSum=-0.781;QD=9.42;ReadPosRankSum=-0.935;SOR=0.657;VarDP=19 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,143 0/1:5,14:19:40:.:179,0,40:2,3,6,8 +chrX 2510044 . T C 524 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=14.58;BaseQRankSum=0;DP=103;ExcessHet=0.0000;FS=9.513;MQ=60.00;MQRankSum=0;QD=14.58;ReadPosRankSum=-0.921;SOR=1.506;VarDP=38 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:65:99:65:.:.:0,143 0|1:22,16:38:99:.:0|1:2510044_T_C:554,0,855:2510044:13,9,5,11 +chrX 2510076 . T A 555 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=15.00;BaseQRankSum=1.261;DP=104;ExcessHet=0.0000;FS=12.712;MQ=60.00;MQRankSum=0;QD=15.00;ReadPosRankSum=-1.997;SOR=1.620;VarDP=39 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:65:99:65:.:.:0,143 0|1:22,17:39:99:.:0|1:2510044_T_C:585,0,852:2510044:14,8,5,12 +chrX 2510500 . A G 1018 . AC=2;AF=0.667;AN=3;AS_AltDP=68;AS_QD=8.73;BaseQRankSum=-0.089;DP=126;ExcessHet=0.0000;FS=1.470;MQ=59.96;MQRankSum=1.13;QD=8.73;ReadPosRankSum=0.425;SOR=0.559;VarDP=120 GT:AD:DP:GQ:PL:SB 1:29,35:64:99:183,0:11,18,14,21 0/1:23,33:56:99:865,0,552:10,13,16,17 +chrX 2510848 . T C 646 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=12.07;BaseQRankSum=-0.14;DP=122;ExcessHet=0.0000;FS=1.085;MQ=60.00;MQRankSum=0;QD=12.07;ReadPosRankSum=0.08;SOR=0.665;VarDP=56 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:64:89:64:.:.:0,89 0|1:37,19:56:99:.:0|1:2510848_T_C:676,0,1454:2510848:17,20,10,9 +chrX 2510849 . G A 646 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=12.07;BaseQRankSum=0.338;DP=122;ExcessHet=0.0000;FS=1.085;MQ=60.00;MQRankSum=0;QD=12.07;ReadPosRankSum=0.19;SOR=0.665;VarDP=56 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:64:89:64:.:.:0,89 0|1:37,19:56:99:.:0|1:2510848_T_C:676,0,1454:2510848:17,20,10,9 +chrX 2510996 . A AT 327.97 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=11.12;BaseQRankSum=-0.151;DP=118;ExcessHet=0.0000;FS=18.178;MQ=59.91;MQRankSum=-0.797;QD=11.12;ReadPosRankSum=-0.947;SOR=1.865;VarDP=33 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:64:89:64:.:.:0,89 0|1:14,19:33:99:.:0|1:2510996_A_AT:367,0,215:2510996:4,10,14,5 +chrX 2512186 . A T 626 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=12.62;BaseQRankSum=1.582;DP=122;ExcessHet=0.0000;FS=1.052;MQ=60.00;MQRankSum=0;QD=12.62;ReadPosRankSum=-0.441;SOR=0.885;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:89:64:0,89 0/1:28,24:52:99:.:656,0,747:13,15,10,14 +chrX 2512415 . C T 724 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=13.00;BaseQRankSum=1.221;DP=126;ExcessHet=0.0000;FS=2.222;MQ=60.00;MQRankSum=0;QD=13.00;ReadPosRankSum=-1.541;SOR=0.648;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:89:64:0,89 0/1:30,28:58:99:.:754,0,784:13,17,15,13 +chrX 2512446 . T A 899 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=14.52;BaseQRankSum=0.249;DP=130;ExcessHet=0.0000;FS=0.956;MQ=60.00;MQRankSum=0;QD=14.52;ReadPosRankSum=-2.228;SOR=0.707;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:89:64:0,89 0/1:30,34:64:99:.:929,0,790:14,16,18,16 +chrX 2514119 . TAAAAAAAAAAA T 818.97 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=18.26;BaseQRankSum=-1.444;DP=117;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=18.26;ReadPosRankSum=-0.308;SOR=0.593;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 1:14,33:47:99:.:858,0:9,5,20,13 0/0:.:59:41:59:0,41,1119 +chrX 2516488 . CA C,AA 1854 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=44,11;AS_QD=20.60,2.11;BaseQRankSum=2.293;DP=114;ExcessHet=0.0000;FS=8.257;MQ=59.61;MQRankSum=0.572;QD=19.42;ReadPosRankSum=1.261;SOR=1.171;VarDP=97 GT:AD:DP:GQ:PL:SB 1:2,44,0:46:99:1772,0,1795:2,0,21,23 0/2:40,0,11:51:99:112,229,1245,0,1016,985:21,19,0,11 +chrX 2516502 . CA C 1869.97 . AC=1;AF=0.333;AN=3;AS_AltDP=48;AS_QD=29.55;BaseQRankSum=2.285;DP=109;ExcessHet=0.0000;FS=3.100;MQ=59.56;MQRankSum=-0.301;QD=38.18;ReadPosRankSum=0.223;SOR=0.251;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 1:2,48:50:99:.:1909,0:2,0,23,25 0/0:.:58:47:58:0,47,990 +chrX 2517657 . CA C,CAAA 2158.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=63,9;AS_QD=30.79,27.67;DP=94;ExcessHet=0.0000;FS=0.000;MQ=58.80;QD=30.53;SOR=1.577;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,37,0:37:99:945,0,945:0,0,15,22 1/2:0,26,9:35:99:1253,258,341,1023,0,1004:0,0,9,26 +chrX 2517673 . A G 2936 . AC=2;AF=0.667;AN=3;AS_AltDP=76;AS_QD=33.33;BaseQRankSum=-0.616;DP=97;ExcessHet=0.0000;FS=4.403;MQ=58.84;MQRankSum=1.52;QD=33.33;ReadPosRankSum=1.163;SOR=0.292;VarDP=89 GT:AD:DP:GQ:PL:SB 1:0,48:48:99:1944,0:0,0,22,26 0/1:13,28:41:99:1022,0,424:3,10,7,21 +chrX 2517810 . CCTTTCTTTCTCTTT C 593.97 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=14.39;BaseQRankSum=0.015;DP=112;ExcessHet=0.0000;FS=4.615;MQ=60.00;MQRankSum=0;QD=14.39;ReadPosRankSum=-0.282;SOR=1.627;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,1501 0/1:27,17:44:99:.:633,0,1052:13,14,5,12 +chrX 2517895 . T G 1626 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=17.81;BaseQRankSum=1.565;DP=98;ExcessHet=0.0000;FS=1.814;MQ=59.68;MQRankSum=0.78;QD=17.81;ReadPosRankSum=-0.118;SOR=0.962;VarDP=93 GT:AD:DP:GQ:PL:SB 1:0,42:42:99:1203,0:0,0,14,28 0/1:33,18:51:99:453,0,878:14,19,8,10 +chrX 2517949 . C T 1459 . AC=2;AF=0.667;AN=3;AS_AltDP=46;AS_QD=22.91;BaseQRankSum=4.477;DP=69;ExcessHet=0.0000;FS=1.337;MQ=60.00;MQRankSum=0;QD=22.91;ReadPosRankSum=0.026;SOR=1.042;VarDP=65 GT:AD:DP:GQ:PL:SB 1:1,37:38:99:1267,0:0,1,6,31 0/1:18,9:27:99:222,0,517:4,14,2,7 +chrX 2518162 . C G 2575 . AC=2;AF=0.667;AN=3;AS_AltDP=83;AS_QD=24.12;BaseQRankSum=0.485;DP=117;ExcessHet=0.0000;FS=11.663;MQ=60.00;MQRankSum=0;QD=24.12;ReadPosRankSum=-0.281;SOR=0.495;VarDP=108 GT:AD:DP:GQ:PL:SB 1:0,58:58:99:1906,0:0,0,29,29 0/1:25,25:50:99:699,0,689:8,17,16,9 +chrX 2518206 . G T 2936 . AC=2;AF=0.667;AN=3;AS_AltDP=94;AS_QD=26.02;BaseQRankSum=-2.093;DP=128;ExcessHet=0.0000;FS=3.377;MQ=60.00;MQRankSum=0;QD=26.02;ReadPosRankSum=-1.1;SOR=0.853;VarDP=114 GT:AD:DP:GQ:PL:SB 1:0,64:64:99:2138,0:0,0,34,30 0/1:20,30:50:99:828,0,545:9,11,19,11 +chrX 2518393 . C T 3058 . AC=2;AF=0.667;AN=3;AS_AltDP=101;AS_QD=24.51;BaseQRankSum=0.089;DP=129;ExcessHet=0.0000;FS=0.843;MQ=60.00;MQRankSum=0;QD=24.51;ReadPosRankSum=1.884;SOR=0.542;VarDP=126 GT:AD:DP:GQ:PL:SB 1:1,66:67:99:2119,0:1,0,33,33 0/1:24,35:59:99:969,0,607:13,11,19,16 +chrX 2518729 . CAAA C,CAA 2223.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=43,20;AS_QD=32.86,11.47;BaseQRankSum=1.007;DP=92;ExcessHet=0.0000;FS=11.179;MQ=59.71;MQRankSum=0;QD=29.39;ReadPosRankSum=-0.627;SOR=0.669;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,43,0:43:99:1873,0,1873:0,0,22,21 0/2:14,0,20:34:99:390,432,733,0,301,241:4,10,14,6 +chrX 2518869 . A G 1946 . AC=1;AF=0.333;AN=3;AS_AltDP=59;AS_QD=33.49;DP=140;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.49;SOR=0.796;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,59:59:99:.:1976,0:0,0,31,28 0/0:.:75:99:75:0,100,1414 +chrX 2518956 . T C 3494 . AC=2;AF=0.667;AN=3;AS_AltDP=119;AS_QD=22.88;BaseQRankSum=-1.521;DP=157;ExcessHet=0.0000;FS=3.547;MQ=60.00;MQRankSum=0;QD=22.88;ReadPosRankSum=-0.368;SOR=0.414;VarDP=154 GT:AD:DP:GQ:PL:SB 1:0,77:77:99:2431,0:0,0,40,37 0/1:35,42:77:99:1093,0,936:21,14,21,21 +chrX 2519005 . A G 2421 . AC=1;AF=0.333;AN=3;AS_AltDP=77;AS_QD=31.83;DP=142;ExcessHet=0.0000;FS=0.000;MQ=59.94;QD=31.83;SOR=0.887;VarDP=77 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,77:77:99:.:2451,0:0,0,42,35 0/0:.:63:94:63:0,94,1255 +chrX 2519227 . A G 2595 . AC=1;AF=0.333;AN=3;AS_AltDP=79;AS_QD=33.23;DP=146;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.23;SOR=0.824;VarDP=79 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,79:79:99:.:2625,0:0,0,37,42 0/0:.:63:94:63:0,94,1255 +chrX 2519433 . A C 2746 . AC=1;AF=0.333;AN=3;AS_AltDP=73;AS_QD=27.67;BaseQRankSum=-0.632;DP=141;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=37.01;ReadPosRankSum=0.85;SOR=1.103;VarDP=75 GT:AD:DP:GQ:MIN_DP:PL:SB 1:2,73:75:99:.:2776,0:1,1,30,43 0/0:.:63:94:63:0,94,1255 +chrX 2519445 . G C 88 . AC=1;AF=0.333;AN=3;AS_AltDP=39;AS_QD=1.57;BaseQRankSum=0.808;DP=138;ExcessHet=0.0000;FS=1.925;MQ=60.00;MQRankSum=0;QD=1.57;ReadPosRankSum=-0.62;SOR=0.951;VarDP=75 GT:AD:DP:GQ:MIN_DP:PL:SB 1:36,39:75:99:.:118,0:15,21,14,25 0/0:.:63:94:63:0,94,1255 +chrX 2519952 . G A 555 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=23.40;DP=50;ExcessHet=0.0000;FS=0.000;MQ=57.62;QD=23.40;SOR=0.818;VarDP=25 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,25:25:99:.:585,0:0,0,8,7 0/0:.:23:0:23:0,0,541 +chrX 2520063 . A C 886 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=26.17;BaseQRankSum=1.0;DP=78;ExcessHet=0.0000;FS=0.000;MQ=55.15;MQRankSum=-0.847;QD=26.17;ReadPosRankSum=-0.102;SOR=1.542;VarDP=35 GT:AD:DP:GQ:MIN_DP:PL:SB 1:2,33:35:99:.:916,0:1,1,11,22 0/0:.:40:37:40:0,37,1022 +chrX 2520186 . ATCACCATCATCATCC A 304.97 . AC=1;AF=0.333;AN=3;AS_AltDP=10;AS_QD=28.67;DP=55;ExcessHet=0.0000;FS=0.000;MQ=45.67;QD=28.67;SOR=1.402;VarDP=12 GT:AD:DP:GQ:MIN_DP:PL:SB 1:2,10:12:99:.:344,0:0,0,3,6 0/0:.:35:31:34:0,31,884 +chrX 2520220 . CCAT C 31.97 . AC=1;AF=0.333;AN=3;AS_AltDP=3;AS_QD=3.38;BaseQRankSum=-0.911;DP=55;ExcessHet=0.0000;FS=6.410;MQ=53.77;MQRankSum=-0.06;QD=3.38;ReadPosRankSum=-1.509;SOR=2.833;VarDP=21 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,99 0/1:18,3:21:71:.:71,0,472:9,9,0,3 +chrX 2520373 . C CCAT 507.97 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=18.86;BaseQRankSum=0.101;DP=60;ExcessHet=0.0000;FS=0.000;MQ=54.59;MQRankSum=-1.433;QD=18.86;ReadPosRankSum=-1.304;SOR=0.976;VarDP=29 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,99 0/1:11,18:29:99:.:547,0,331:5,6,7,11 +chrX 2520673 . CCAA C 44.97 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=1.68;BaseQRankSum=-1.904;DP=102;ExcessHet=0.0000;FS=1.107;MQ=59.79;MQRankSum=1.081;QD=1.68;ReadPosRankSum=-1.641;SOR=1.013;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 1:24,26:50:84:.:84,0:13,11,16,10 0/0:.:54:31:51:0,31,1213 +chrX 2520686 . T *,C 979 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=24,24;AS_QD=0.00,23.38;DP=100;ExcessHet=0.0000;FS=0.000;MQ=59.78;QD=21.02;SOR=1.067;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 2:0,24,24:48:1:.:1009,1,0:0,0,28,20 0/0:.:54:31:51:0,31,1213,31,1213,1213 +chrX 2521085 . A G 2345 . AC=1;AF=0.333;AN=3;AS_AltDP=74;AS_QD=31.67;BaseQRankSum=2.271;DP=128;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=31.67;ReadPosRankSum=0.023;SOR=0.323;VarDP=75 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,74:75:99:.:2375,0:1,0,41,33 0/0:.:54:31:51:0,31,1213 +chrX 2521161 . T TA 2175.97 . AC=1;AF=0.333;AN=3;AS_AltDP=73;AS_QD=30.34;DP=129;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.34;SOR=0.836;VarDP=73 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,73:73:99:.:2215,0:0,0,39,34 0/0:.:54:31:51:0,31,1213 +chrX 2521611 . C T 2407 . AC=1;AF=0.333;AN=3;AS_AltDP=73;AS_QD=33.38;DP=125;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.38;SOR=0.898;VarDP=73 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,73:73:99:.:2437,0:0,0,33,40 0/0:.:54:31:51:0,31,1213 +chrX 2522039 . A G 1659 . AC=1;AF=0.333;AN=3;AS_AltDP=50;AS_QD=33.78;DP=104;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.78;SOR=1.051;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,50:50:99:.:1689,0:0,0,29,21 0/0:.:54:31:51:0,31,1213 +chrX 2522113 . C A,CA 239 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=6,14;AS_QD=3.18,7.47;BaseQRankSum=1.705;DP=105;ExcessHet=0.0000;FS=4.360;MQ=60.00;MQRankSum=0;QD=6.40;ReadPosRankSum=-1.411;SOR=1.402;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:50:99:50:0,1141,1141 0/2:22,6,14:42:99:.:269,180,1418,0,386,356:11,11,13,7 +chrX 2522130 . A AG 858.97 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=25.66;BaseQRankSum=0.765;DP=115;ExcessHet=0.0000;FS=12.548;MQ=60.00;MQRankSum=0;QD=25.66;ReadPosRankSum=-1.061;SOR=1.231;VarDP=35 GT:AD:DP:GQ:MIN_DP:PL:SB 1:3,32:35:99:.:898,0:0,3,21,11 0/0:.:63:88:63:0,88,1443 +chrX 2522132 . G GAA,A 2076 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=3,32;AS_QD=30.92,33.09;DP=114;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=60.17;SOR=1.148;VarDP=35 GT:AD:DP:GQ:MIN_DP:PL:SB 2:0,3,32:35:99:.:2106,935,0:0,0,21,14 0/0:.:63:88:63:0,88,1443,88,1443,1443 +chrX 2522545 . G T 2120 . AC=1;AF=0.333;AN=3;AS_AltDP=70;AS_QD=30.28;BaseQRankSum=-0.636;DP=136;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=30.28;ReadPosRankSum=1.733;SOR=0.272;VarDP=71 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,70:71:99:.:2150,0:1,0,37,33 0/0:.:63:88:63:0,88,1443 +chrX 2523225 . CTT C 131.97 . AC=1;AF=0.333;AN=3;AS_AltDP=8;AS_QD=8.55;BaseQRankSum=0.616;DP=116;ExcessHet=0.0000;FS=11.886;MQ=59.06;MQRankSum=0.248;QD=8.55;ReadPosRankSum=-1.081;SOR=1.724;VarDP=20 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:99:66:0,327 0/1:12,8:20:99:.:171,0,252:9,3,2,6 +chrX 2523421 . T C 2136 . AC=2;AF=0.667;AN=3;AS_AltDP=72;AS_QD=21.24;BaseQRankSum=-1.22;DP=109;ExcessHet=0.0000;FS=7.168;MQ=59.96;MQRankSum=0;QD=21.24;ReadPosRankSum=1.274;SOR=0.267;VarDP=102 GT:AD:DP:GQ:PL:SB 1:0,55:55:99:1756,0:0,0,25,30 0/1:30,17:47:99:410,0,872:10,20,10,7 +chrX 2524173 . G A 585 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=12.81;BaseQRankSum=0.572;DP=119;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=12.81;ReadPosRankSum=0.382;SOR=0.756;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:70:99:70:0,1615 0/1:25,23:48:99:.:615,0,665:8,17,7,16 +chrX 2524315 . A G 4172 . AC=3;AF=1.00;AN=3;AS_AltDP=129;AS_QD=32.57;DP=135;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.57;SOR=0.740;VarDP=129 GT:AD:DP:GQ:PL:SB 1:0,67:67:99:2168,0:0,0,28,39 1/1:0,62:62:99:2034,186,0:0,0,38,24 +chrX 2524430 . A G 690 . AC=2;AF=0.667;AN=3;AS_AltDP=66;AS_QD=5.29;BaseQRankSum=0.822;DP=143;ExcessHet=0.0000;FS=4.152;MQ=60.00;MQRankSum=0;QD=5.29;ReadPosRankSum=0.978;SOR=0.414;VarDP=136 GT:AD:DP:GQ:PL:SB 1:38,42:80:99:99,0:25,13,23,19 0/1:32,24:56:99:621,0,874:19,13,13,11 +chrX 2524626 . C T 953 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=11.99;BaseQRankSum=0.178;DP=155;ExcessHet=0.0000;FS=7.449;MQ=60.00;MQRankSum=0;QD=11.99;ReadPosRankSum=0.726;SOR=0.250;VarDP=82 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:71:99:71:0,1452 0/1:44,38:82:99:.:983,0,1203:29,15,19,19 +chrX 2524961 . G A 1090 . AC=1;AF=0.333;AN=3;AS_AltDP=40;AS_QD=16.00;BaseQRankSum=-0.186;DP=143;ExcessHet=0.0000;FS=6.474;MQ=60.00;MQRankSum=0;QD=16.00;ReadPosRankSum=-0.789;SOR=0.264;VarDP=70 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:71:99:71:0,1452 0/1:30,40:70:99:.:1120,0,791:9,21,18,22 +chrX 2525849 . C CCCTT 619.97 . AC=2;AF=0.667;AN=3;AS_AltDP=44;AS_QD=7.32;BaseQRankSum=0.432;DP=100;ExcessHet=0.0000;FS=10.420;MQ=60.00;MQRankSum=0;QD=7.32;ReadPosRankSum=-0.579;SOR=1.662;VarDP=90 GT:AD:DP:GQ:PL:SB 1:26,27:53:44:44,0:12,14,6,21 0/1:20,17:37:99:615,0,748:11,9,8,9 +chrX 2526535 . C T 378 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=11.33;BaseQRankSum=0.734;DP=96;ExcessHet=0.0000;FS=1.320;MQ=60.00;MQRankSum=0;QD=11.33;ReadPosRankSum=1.513;SOR=0.814;VarDP=36 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:58:99:58:0,109 0/1:20,16:36:99:.:408,0,502:9,11,9,7 +chrX 2527092 . G A 297 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=5.95;BaseQRankSum=-1.509;DP=118;ExcessHet=0.0000;FS=2.366;MQ=60.00;MQRankSum=0;QD=5.95;ReadPosRankSum=0.37;SOR=1.179;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 1:22,33:55:99:.:327,0:11,11,13,20 0/0:.:61:68:61:0,68,1211 +chrX 2528142 . C T 546 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=10.67;BaseQRankSum=1.737;DP=116;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=10.67;ReadPosRankSum=-0.018;SOR=0.576;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 1:19,35:54:99:.:576,0:11,8,19,16 0/0:.:61:68:61:0,68,1211 +chrX 2529179 . A G 110 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=1.94;BaseQRankSum=0.153;DP=133;ExcessHet=0.0000;FS=1.932;MQ=60.00;MQRankSum=0;QD=1.94;ReadPosRankSum=-0.192;SOR=0.484;VarDP=72 GT:AD:DP:GQ:MIN_DP:PL:SB 1:34,38:72:99:.:140,0:20,14,20,18 0/0:.:61:68:61:0,68,1211 +chrX 2529701 . C A 367 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=6.02;BaseQRankSum=1.303;DP=128;ExcessHet=0.0000;FS=30.516;MQ=60.00;MQRankSum=0;QD=6.02;ReadPosRankSum=-0.96;SOR=0.838;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 1:28,38:66:99:.:397,0:5,23,23,15 0/0:.:61:68:61:0,68,1211 +chrX 2530086 . G A 64 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=1.74;BaseQRankSum=-0.803;DP=118;ExcessHet=0.0000;FS=10.009;MQ=59.92;MQRankSum=0;QD=1.74;ReadPosRankSum=0.382;SOR=0.274;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 1:25,29:54:94:.:94,0:18,7,14,15 0/0:.:61:68:61:0,68,1211 +chrX 2530301 . T C 267 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=4.43;BaseQRankSum=-1.272;DP=113;ExcessHet=0.0000;FS=3.400;MQ=59.62;MQRankSum=0.193;QD=4.43;ReadPosRankSum=-1.393;SOR=0.373;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 1:29,38:67:99:.:297,0:19,10,21,17 0/0:.:45:46:45:0,46,1071 +chrX 2530323 . C G 78 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=1.57;BaseQRankSum=-0.128;DP=117;ExcessHet=0.0000;FS=0.940;MQ=59.47;MQRankSum=0.062;QD=1.57;ReadPosRankSum=0.048;SOR=0.507;VarDP=69 GT:AD:DP:GQ:MIN_DP:PL:SB 1:33,36:69:99:.:108,0:21,12,21,15 0/0:.:45:46:45:0,46,1071 +chrX 2531306 . A G 1688 . AC=3;AF=1.00;AN=3;AS_AltDP=84;AS_QD=14.94;BaseQRankSum=-0.298;DP=121;ExcessHet=0.0000;FS=0.000;MQ=59.91;MQRankSum=0.045;QD=14.94;ReadPosRankSum=1.592;SOR=0.729;VarDP=115 GT:AD:DP:GQ:PL:SB 1:31,33:64:54:54,0:10,21,12,21 1/1:0,51:51:99:1664,153,0:0,0,15,36 +chrX 2531870 . C T 766 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=10.61;BaseQRankSum=1.202;DP=137;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=10.61;ReadPosRankSum=-1.173;SOR=0.756;VarDP=75 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,1265 0/1:44,31:75:99:.:796,0,1194:22,22,15,16 +chrX 2531946 . G A 1029 . AC=1;AF=0.333;AN=3;AS_AltDP=41;AS_QD=12.91;BaseQRankSum=-0.579;DP=146;ExcessHet=0.0000;FS=4.295;MQ=60.00;MQRankSum=0;QD=12.91;ReadPosRankSum=1.28;SOR=0.326;VarDP=82 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,1265 0/1:41,41:82:99:.:1059,0,1093:15,26,20,21 +chrX 2532011 . G A 1098 . AC=1;AF=0.333;AN=3;AS_AltDP=41;AS_QD=15.67;BaseQRankSum=0.058;DP=136;ExcessHet=0.0000;FS=12.395;MQ=60.00;MQRankSum=0;QD=15.67;ReadPosRankSum=0.313;SOR=0.613;VarDP=72 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,1265 0/1:31,41:72:99:.:1128,0,785:10,21,23,18 +chrX 2532088 . C A 823 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=15.51;BaseQRankSum=0.65;DP=117;ExcessHet=0.0000;FS=3.833;MQ=59.60;MQRankSum=-1.23;QD=15.51;ReadPosRankSum=0.85;SOR=0.418;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,1265 0/1:24,31:55:99:.:853,0,579:9,15,16,15 +chrX 2532153 . C CA 126.97 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=4.26;BaseQRankSum=1.189;DP=103;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=4.26;ReadPosRankSum=-1.015;SOR=0.560;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 1:16,23:39:99:.:166,0:9,7,12,11 0/0:.:50:60:50:0,60,900 +chrX 2532598 . T C 39 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=1.19;BaseQRankSum=-0.157;DP=97;ExcessHet=0.0000;FS=2.150;MQ=60.00;MQRankSum=0;QD=1.19;ReadPosRankSum=-0.936;SOR=0.460;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 1:28,30:58:69:.:69,0:12,16,15,15 0/0:.:38:0:38:0,0,233 +chrX 2532623 . G GCA 3179.97 . AC=3;AF=1.00;AN=3;AS_AltDP=83;AS_QD=28.03;DP=89;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=38.78;SOR=0.987;VarDP=83 GT:AD:DP:GQ:PL:SB 1:0,58:58:99:2246,0:0,0,27,31 1/1:0,25:25:75:973,75,0:0,0,9,16 +chrX 2532799 . G T 3562 . AC=3;AF=1.00;AN=3;AS_AltDP=110;AS_QD=32.36;BaseQRankSum=2.328;DP=113;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=32.36;ReadPosRankSum=0.158;SOR=0.497;VarDP=111 GT:AD:DP:GQ:PL:SB 1:1,65:66:99:2098,0:1,0,40,25 1/1:0,45:45:99:1494,135,0:0,0,28,17 +chrX 2532934 . T A 667 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=12.91;BaseQRankSum=-0.827;DP=122;ExcessHet=0.0000;FS=12.548;MQ=59.68;MQRankSum=-0.963;QD=12.91;ReadPosRankSum=1.783;SOR=1.382;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:99:66:0,422 0/1:27,27:54:99:.:697,0,747:17,10,9,18 +chrX 2533134 . G A 1033 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=22.62;BaseQRankSum=-1.074;DP=114;ExcessHet=0.0000;FS=14.356;MQ=60.00;MQRankSum=0;QD=22.62;ReadPosRankSum=0.689;SOR=0.764;VarDP=47 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:66:99:66:.:.:0,422 0|1:20,27:47:99:.:0|1:2533134_G_A:1063,0,728:2533134:5,15,16,11 +chrX 2533140 . T C 1033 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=22.62;BaseQRankSum=-0.449;DP=114;ExcessHet=0.0000;FS=14.356;MQ=60.00;MQRankSum=0;QD=22.62;ReadPosRankSum=0.54;SOR=0.764;VarDP=47 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:66:99:66:.:.:0,422 0|1:20,27:47:99:.:0|1:2533134_G_A:1063,0,728:2533134:5,15,16,11 +chrX 2533361 . C G 367 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=9.23;BaseQRankSum=-0.314;DP=111;ExcessHet=0.0000;FS=6.868;MQ=60.00;MQRankSum=0;QD=9.23;ReadPosRankSum=-0.05;SOR=1.539;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:99:66:0,422 0/1:27,16:43:99:.:397,0,769:12,15,11,5 +chrX 2533404 . A AC 1107.97 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=23.41;BaseQRankSum=0.647;DP=119;ExcessHet=0.0000;FS=4.189;MQ=60.00;MQRankSum=0;QD=23.41;ReadPosRankSum=-1.216;SOR=0.381;VarDP=49 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:66:99:66:.:.:0,422 0|1:20,29:49:99:.:0|1:2533404_A_AC:1147,0,719:2533404:13,7,14,15 +chrX 2533414 . C A 1158 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=22.85;BaseQRankSum=0.115;DP=119;ExcessHet=0.0000;FS=5.683;MQ=60.00;MQRankSum=0;QD=22.85;ReadPosRankSum=-0.718;SOR=0.617;VarDP=52 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:66:99:66:.:.:0,422 0|1:21,31:52:99:.:0|1:2533404_A_AC:1188,0,748:2533404:13,8,14,17 +chrX 2533500 . C G 722 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=13.19;BaseQRankSum=-0.404;DP=123;ExcessHet=0.0000;FS=1.007;MQ=60.00;MQRankSum=0;QD=13.19;ReadPosRankSum=1.453;SOR=0.782;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:99:66:0,422 0/1:29,28:57:99:.:752,0,797:14,15,15,13 +chrX 2534073 . T C 664 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=11.02;BaseQRankSum=1.919;DP=130;ExcessHet=0.0000;FS=9.185;MQ=60.00;MQRankSum=0;QD=11.02;ReadPosRankSum=-0.936;SOR=0.458;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:99:66:0,422 0/1:37,26:63:99:.:694,0,996:25,12,12,14 +chrX 2534155 . A G 690 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=10.91;BaseQRankSum=0.425;DP=133;ExcessHet=0.0000;FS=10.877;MQ=60.00;MQRankSum=0;QD=10.91;ReadPosRankSum=-0.743;SOR=0.802;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:99:66:0,422 0/1:37,29:66:99:.:720,0,1422:24,13,12,17 +chrX 2534159 . A G 835 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=12.72;BaseQRankSum=-2.742;DP=136;ExcessHet=0.0000;FS=10.606;MQ=60.00;MQRankSum=0;QD=12.72;ReadPosRankSum=0.875;SOR=1.317;VarDP=68 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:99:66:0,422 0/1:31,37:68:99:.:865,0,1161:13,18,24,13 +chrX 2534180 . A G 766 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=11.06;BaseQRankSum=2.102;DP=143;ExcessHet=0.0000;FS=6.336;MQ=60.00;MQRankSum=0;QD=11.06;ReadPosRankSum=-0.337;SOR=0.757;VarDP=72 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:99:66:0,422 0/1:42,30:72:99:.:796,0,1113:25,17,13,17 +chrX 2534250 . G A 717 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=12.25;BaseQRankSum=2.192;DP=127;ExcessHet=0.0000;FS=3.469;MQ=60.00;MQRankSum=0;QD=12.25;ReadPosRankSum=-0.087;SOR=1.145;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:99:66:0,422 0/1:34,27:61:99:.:747,0,873:16,18,10,17 +chrX 2534316 . T C 554 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=11.68;BaseQRankSum=-1.455;DP=118;ExcessHet=0.0000;FS=1.102;MQ=60.00;MQRankSum=0;QD=11.68;ReadPosRankSum=-0.779;SOR=0.460;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:99:66:0,422 0/1:27,23:50:99:.:584,0,769:11,16,11,12 +chrX 2534391 . A C 701 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=13.54;BaseQRankSum=-1.029;DP=123;ExcessHet=0.0000;FS=1.067;MQ=60.00;MQRankSum=0;QD=13.54;ReadPosRankSum=1.134;SOR=0.448;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:99:66:0,422 0/1:27,27:54:99:.:731,0,765:10,17,12,15 +chrX 2534869 . C T 3772 . AC=3;AF=1.00;AN=3;AS_AltDP=115;AS_QD=33.06;DP=119;ExcessHet=0.0000;FS=0.000;MQ=59.98;QD=33.06;SOR=0.820;VarDP=115 GT:AD:DP:GQ:PL:SB 1:0,62:62:99:2045,0:0,0,34,28 1/1:0,53:53:99:1757,159,0:0,0,27,26 +chrX 2534897 . A G 730 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=12.46;BaseQRankSum=-0.197;DP=134;ExcessHet=0.0000;FS=0.000;MQ=59.95;MQRankSum=-0.984;QD=12.46;ReadPosRankSum=3.117;SOR=0.638;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:72:99:72:0,1364 0/1:31,30:61:99:.:760,0,824:17,14,16,14 +chrX 2535085 . C T 903 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=16.09;BaseQRankSum=-0.98;DP=131;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=16.09;ReadPosRankSum=2.003;SOR=0.779;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:72:99:72:0,1364 0/1:23,35:58:99:.:933,0,596:11,12,16,19 +chrX 2535194 . TAA T 803.97 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=15.91;BaseQRankSum=0.536;DP=129;ExcessHet=0.0000;FS=5.672;MQ=60.00;MQRankSum=0;QD=15.91;ReadPosRankSum=-0.613;SOR=1.049;VarDP=53 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:72:99:72:.:.:0,1364 0|1:30,23:53:99:.:0|1:2535194_TAA_T:843,0,1180:2535194:17,13,9,14 +chrX 2535204 . TG T 830.97 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=15.82;BaseQRankSum=2.572;DP=133;ExcessHet=0.0000;FS=3.786;MQ=60.00;MQRankSum=0;QD=15.82;ReadPosRankSum=-0.226;SOR=0.938;VarDP=55 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:72:99:72:.:.:0,1364 0|1:31,24:55:99:.:0|1:2535194_TAA_T:870,0,1176:2535194:17,14,10,14 +chrX 2535304 . A C 537 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=11.12;BaseQRankSum=-0.397;DP=126;ExcessHet=0.0000;FS=4.116;MQ=60.00;MQRankSum=0;QD=11.12;ReadPosRankSum=-1.279;SOR=0.257;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:72:99:72:0,1364 0/1:28,23:51:99:.:567,0,756:19,9,12,11 +chrX 2535666 . T G 749 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=14.43;BaseQRankSum=-2.084;DP=128;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.43;ReadPosRankSum=0.104;SOR=0.693;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:72:99:72:0,1364 0/1:25,29:54:99:.:779,0,685:13,12,14,15 +chrX 2535729 . A G 636 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=12.57;BaseQRankSum=0.226;DP=129;ExcessHet=0.0000;FS=2.323;MQ=60.00;MQRankSum=0;QD=12.57;ReadPosRankSum=1.032;SOR=0.404;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:72:99:72:0,1364 0/1:27,26:53:99:.:666,0,687:16,11,13,13 +chrX 2535836 . A G 703 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=12.86;BaseQRankSum=2.779;DP=129;ExcessHet=0.0000;FS=2.215;MQ=60.00;MQRankSum=0;QD=12.86;ReadPosRankSum=-0.93;SOR=0.434;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:72:99:72:0,1364 0/1:31,26:57:99:.:733,0,811:13,18,13,13 +chrX 2536242 . A G 950 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=15.08;BaseQRankSum=-0.643;DP=143;ExcessHet=0.0000;FS=13.217;MQ=60.00;MQRankSum=0;QD=15.08;ReadPosRankSum=0.184;SOR=1.118;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:72:99:72:0,1364 0/1:30,35:65:99:.:980,0,827:11,19,22,13 +chrX 2536675 . T G 332 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=7.10;BaseQRankSum=-1.72;DP=124;ExcessHet=0.0000;FS=2.573;MQ=60.00;MQRankSum=0;QD=7.10;ReadPosRankSum=-2.329;SOR=0.557;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:72:99:72:0,1364 0/1:34,17:51:99:.:362,0,979:14,20,9,8 +chrX 2536689 . T C 241 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=5.42;BaseQRankSum=-3.225;DP=113;ExcessHet=0.0000;FS=1.114;MQ=60.00;MQRankSum=0;QD=5.42;ReadPosRankSum=-0.36;SOR=0.529;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 1:19,31:50:99:.:271,0:7,12,13,18 0/0:.:61:99:61:0,120,1800 +chrX 2536830 . T C 3819 . AC=3;AF=1.00;AN=3;AS_AltDP=120;AS_QD=32.08;DP=124;ExcessHet=0.0000;FS=0.000;MQ=59.92;QD=32.08;SOR=0.950;VarDP=120 GT:AD:DP:GQ:PL:SB 1:0,61:61:99:1995,0:0,0,32,29 1/1:0,59:59:99:1854,177,0:0,0,35,24 +chrX 2536856 . A G 622 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=10.52;BaseQRankSum=-3.06;DP=133;ExcessHet=0.0000;FS=0.979;MQ=60.00;MQRankSum=0;QD=10.52;ReadPosRankSum=-0.447;SOR=0.896;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:69:99:69:0,1737 0/1:35,27:62:99:.:652,0,1010:19,16,16,11 +chrX 2536976 . T C 698 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=12.13;BaseQRankSum=-0.49;DP=131;ExcessHet=0.0000;FS=3.617;MQ=60.00;MQRankSum=0;QD=12.13;ReadPosRankSum=-0.726;SOR=0.324;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:69:99:69:0,1737 0/1:32,28:60:99:.:728,0,863:20,12,14,14 +chrX 2537354 . TAA T,TA 1448.97 . AC=1,2;AF=0.333,0.667;AN=3;AS_AltDP=27,49;AS_QD=32.00,28.22;DP=111;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=19.58;SOR=0.801;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,27,22:49:99:864,0,105:0,0,22,27 2/2:0,0,27:27:81:624,624,624,81,81,0:0,0,14,13 +chrX 2537628 . C T 619 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=8.89;BaseQRankSum=0.415;DP=138;ExcessHet=0.0000;FS=2.059;MQ=60.00;MQRankSum=0;QD=8.89;ReadPosRankSum=1.332;SOR=0.435;VarDP=73 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,1594 0/1:46,27:73:99:.:649,0,1237:17,29,12,15 +chrX 2537644 . A G 488 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=7.73;BaseQRankSum=-0.048;DP=133;ExcessHet=0.0000;FS=2.182;MQ=60.00;MQRankSum=0;QD=7.73;ReadPosRankSum=2.682;SOR=0.407;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,1594 0/1:43,24:67:99:.:518,0,1195:16,27,11,13 +chrX 2538194 . T TTGTTTTGCACAAGG 2567.97 . AC=3;AF=1.00;AN=3;AS_AltDP=91;AS_QD=21.02;BaseQRankSum=1.324;DP=131;ExcessHet=0.0000;FS=11.779;MQ=60.00;MQRankSum=0;QD=21.02;ReadPosRankSum=-0.619;SOR=0.485;VarDP=124 GT:AD:DP:GQ:PL:SB 1:33,36:69:99:133,0:11,22,20,16 1/1:0,55:55:99:2474,165,0:0,0,29,26 +chrX 2538299 . G C 635 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=12.55;BaseQRankSum=-0.178;DP=124;ExcessHet=0.0000;FS=3.828;MQ=60.00;MQRankSum=0;QD=12.55;ReadPosRankSum=-0.437;SOR=0.764;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:70:99:70:0,1800 0/1:28,25:53:99:.:665,0,784:16,12,11,14 +chrX 2538408 . C T 4168 . AC=3;AF=1.00;AN=3;AS_AltDP=128;AS_QD=32.80;DP=133;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.80;SOR=1.270;VarDP=128 GT:AD:DP:GQ:PL:SB 1:0,62:62:99:2025,0:0,0,38,24 1/1:0,66:66:99:2173,198,0:0,0,41,25 +chrX 2539312 . G C 607 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=5.74;BaseQRankSum=-0.541;DP=117;ExcessHet=0.0000;FS=0.705;MQ=59.91;MQRankSum=0;QD=5.74;ReadPosRankSum=0.784;SOR=0.668;VarDP=111 GT:AD:DP:GQ:PL:SB 1:26,31:57:99:129,0:12,14,16,15 0/1:32,22:54:99:508,0,808:18,14,10,12 +chrX 2539334 . C G 3562 . AC=3;AF=1.00;AN=3;AS_AltDP=110;AS_QD=32.65;DP=118;ExcessHet=0.0000;FS=0.000;MQ=59.83;QD=32.65;SOR=0.806;VarDP=110 GT:AD:DP:GQ:PL:SB 1:0,61:61:99:2021,0:0,0,27,34 1/1:0,49:49:99:1571,147,0:0,0,25,24 +chrX 2539352 . A G 692 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=14.73;BaseQRankSum=0.638;DP=119;ExcessHet=0.0000;FS=4.055;MQ=60.00;MQRankSum=0;QD=14.73;ReadPosRankSum=0.241;SOR=0.706;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:99:68:0,1394 0/1:22,27:49:99:.:722,0,518:9,13,15,12 +chrX 2539751 . G A 474 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=9.33;BaseQRankSum=0.597;DP=124;ExcessHet=0.0000;FS=6.326;MQ=60.00;MQRankSum=0;QD=9.33;ReadPosRankSum=1.2;SOR=0.193;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:99:68:0,1394 0/1:34,20:54:99:.:504,0,920:25,9,11,9 +chrX 2540279 . C A 784 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=17.70;BaseQRankSum=-1.824;DP=116;ExcessHet=0.0000;FS=11.541;MQ=59.94;MQRankSum=1.415;QD=17.70;ReadPosRankSum=-1.188;SOR=1.399;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:99:68:0,1394 0/1:16,30:46:99:.:814,0,408:10,6,10,20 +chrX 2540466 . A AT,ATT 1376.97 . AC=1,2;AF=0.333,0.667;AN=3;AS_AltDP=22,39;AS_QD=32.74,34.79;DP=84;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=23.21;SOR=0.725;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,22,23:45:59:886,0,59:0,0,23,22 2/2:0,0,16:16:48:530,530,530,48,48,0:0,0,7,9 +chrX 2540749 . C T 706 . AC=3;AF=1.00;AN=3;AS_AltDP=58;AS_QD=7.83;BaseQRankSum=-0.168;DP=98;ExcessHet=0.0000;FS=0.795;MQ=59.23;MQRankSum=0.039;QD=7.83;ReadPosRankSum=-1.578;SOR=0.836;VarDP=94 GT:AD:DP:GQ:PL:SB 1:36,37:73:25:25,0:18,18,16,21 1/1:0,21:21:63:711,63,0:0,0,11,10 +chrX 2540851 . CTTTTTTTT C,CTTTTTTT 1132.97 . AC=3,0;AF=1.00,0.00;AN=3;AS_AltDP=39,11;AS_QD=30.05,22.64;DP=73;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=23.44;SOR=0.773;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,26,11:37:99:609,0,360:0,0,17,20 1/1:0,13,0:13:40:563,40,0,563,40,563:0,0,9,4 +chrX 2541283 . C T 719 . AC=2;AF=0.667;AN=3;AS_AltDP=22;AS_QD=34.05;DP=72;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=34.05;SOR=1.329;VarDP=22 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:49:60:47:0,60 1/1:0,22:22:66:.:749,66,0:0,0,8,14 +chrX 2541489 . GCTTT G 383.97 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=10.85;BaseQRankSum=-0.754;DP=93;ExcessHet=0.0000;FS=12.046;MQ=59.82;MQRankSum=-1.444;QD=10.85;ReadPosRankSum=1.949;SOR=0.631;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:49:60:47:0,60 0/1:27,12:39:99:.:423,0,1087:21,6,5,7 +chrX 2541582 . A T 60 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=3.00;BaseQRankSum=1.587;DP=62;ExcessHet=0.0000;FS=1.494;MQ=60.00;MQRankSum=0;QD=3.00;ReadPosRankSum=-0.77;SOR=0.412;VarDP=30 GT:AD:DP:GQ:MIN_DP:PL:SB 1:14,16:30:90:.:90,0:10,4,10,6 0/0:.:36:34:32:0,34,877 +chrX 2541594 . GAA G,GAAAA,GGAAAAAAAAAAAA 845.97 . AC=0,1,1;AF=0.00,0.333,0.333;AN=3;AS_AltDP=3,15,18;AS_QD=0.00,13.21,21.04;BaseQRankSum=0.338;DP=81;ExcessHet=0.0000;FS=8.711;MQ=57.91;MQRankSum=-1.228;QD=19.67;ReadPosRankSum=-2.571;SOR=0.511;VarDP=45 GT:AD:DP:GQ:PL:SB 2:0,3,15,0:18:99:317,690,0,553:0,0,9,9 0/3:9,0,0,18:27:99:568,596,840,596,840,840,0,244,244,190:7,2,7,11 +chrX 2541821 . A G 1704 . AC=3;AF=1.00;AN=3;AS_AltDP=73;AS_QD=18.06;BaseQRankSum=0.789;DP=102;ExcessHet=0.0000;FS=0.900;MQ=60.00;MQRankSum=0;QD=18.06;ReadPosRankSum=1.184;SOR=0.706;VarDP=96 GT:AD:DP:GQ:PL:SB 1:23,28:51:99:211,0:11,12,14,14 1/1:0,45:45:99:1523,135,0:0,0,24,21 +chrX 2541992 . C T 812 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=15.31;BaseQRankSum=0.446;DP=114;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=15.31;ReadPosRankSum=-0.077;SOR=0.732;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:55:99:55:0,307 0/1:23,32:55:99:.:842,0,550:11,12,15,17 +chrX 2542548 . A G 3164 . AC=3;AF=1.00;AN=3;AS_AltDP=102;AS_QD=31.31;DP=106;ExcessHet=0.0000;FS=0.000;MQ=59.51;QD=31.31;SOR=0.952;VarDP=102 GT:AD:DP:GQ:PL:SB 1:0,49:49:99:1553,0:0,0,30,19 1/1:0,53:53:99:1641,158,0:0,0,27,26 +chrX 2543002 . AAAATAAATAAATAAATAAAT AAAATAAATAAAT,A 1909.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=40,23;AS_QD=19.69,24.45;BaseQRankSum=-1.721;DP=122;ExcessHet=0.0000;FS=1.170;MQ=59.96;MQRankSum=1.212;QD=24.99;ReadPosRankSum=-0.088;SOR=1.055;VarDP=78 GT:AD:DP:GQ:PL:SB 1:15,20,0:35:99:178,0,853:6,9,3,17 1/2:0,20,23:43:99:1771,929,866,842,0,1052:0,0,18,25 +chrX 2543324 . T C 683 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=11.88;BaseQRankSum=-1.529;DP=117;ExcessHet=0.0000;FS=0.990;MQ=60.00;MQRankSum=0;QD=11.88;ReadPosRankSum=1.972;SOR=0.740;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:54:99:54:0,842 0/1:32,28:60:99:.:713,0,892:17,15,13,15 +chrX 2543766 . CA C,CAA 554.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=9,20;AS_QD=11.56,21.45;DP=100;ExcessHet=0.0000;FS=0.000;MQ=59.64;QD=20.48;SOR=1.460;VarDP=29 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:54:99:54:0,842,842 1/2:0,9,20:29:99:.:594,490,590,165,0,171:0,0,19,10 +chrX 2544106 . C T 1139 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=20.16;BaseQRankSum=0.419;DP=124;ExcessHet=0.0000;FS=3.623;MQ=60.00;MQRankSum=0;QD=20.16;ReadPosRankSum=-1.603;SOR=0.352;VarDP=58 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:64:99:64:.:.:0,1552 0|1:27,31:58:99:.:0|1:2544106_C_T:1169,0,999:2544106:10,17,15,16 +chrX 2544123 . T C 1091 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=19.00;BaseQRankSum=-1.4;DP=125;ExcessHet=0.0000;FS=2.248;MQ=60.00;MQRankSum=0;QD=19.00;ReadPosRankSum=-0.218;SOR=0.405;VarDP=59 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:64:99:64:.:.:0,1552 0|1:29,30:59:99:.:0|1:2544106_C_T:1121,0,1066:2544106:10,19,13,17 +chrX 2544710 . T C 747 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=12.53;BaseQRankSum=-0.65;DP=129;ExcessHet=0.0000;FS=4.921;MQ=60.00;MQRankSum=0;QD=12.53;ReadPosRankSum=-2.107;SOR=1.074;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,1552 0/1:32,30:62:99:.:777,0,851:15,17,18,12 +chrX 2545328 . G A 4742 . AC=3;AF=1.00;AN=3;AS_AltDP=145;AS_QD=32.91;DP=152;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.91;SOR=0.919;VarDP=145 GT:AD:DP:GQ:PL:SB 1:0,70:70:99:2328,0:0,0,30,40 1/1:0,75:75:99:2444,225,0:0,0,50,25 +chrX 2546745 . T C 4187 . AC=3;AF=1.00;AN=3;AS_AltDP=131;AS_QD=31.95;BaseQRankSum=-0.52;DP=138;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=31.95;ReadPosRankSum=-1.605;SOR=0.247;VarDP=132 GT:AD:DP:GQ:PL:SB 1:1,53:54:99:1676,0:0,1,24,29 1/1:0,78:78:99:2541,234,0:0,0,42,36 +chrX 2547395 . T C 3532 . AC=3;AF=1.00;AN=3;AS_AltDP=112;AS_QD=31.80;DP=117;ExcessHet=0.0000;FS=0.000;MQ=59.99;QD=31.80;SOR=0.844;VarDP=112 GT:AD:DP:GQ:PL:SB 1:0,73:73:99:2276,0:0,0,36,37 1/1:0,39:39:99:1286,117,0:0,0,24,15 +chrX 2547688 . G A 680 . AC=2;AF=0.667;AN=3;AS_AltDP=42;AS_QD=8.35;BaseQRankSum=2.432;DP=93;ExcessHet=0.0000;FS=2.866;MQ=60.00;MQRankSum=0;QD=8.35;ReadPosRankSum=0.926;SOR=0.973;VarDP=85 GT:AD:DP:GQ:PL:SB 1:20,21:41:99:131,0:9,11,11,10 0/1:23,21:44:99:579,0,543:12,11,13,8 +chrX 2547732 . TTGTATGTG T 1742.97 . AC=3;AF=1.00;AN=3;AS_AltDP=40;AS_QD=29.79;DP=68;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.55;SOR=3.611;VarDP=40 GT:AD:DP:GQ:PL:SB 1:0,21:21:99:935,0:0,0,18,3 1/1:0,19:19:58:847,58,0:0,0,17,2 +chrX 2548133 . TAA T 196.97 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=7.61;BaseQRankSum=0.772;DP=93;ExcessHet=0.0000;FS=1.515;MQ=59.63;MQRankSum=0.809;QD=7.61;ReadPosRankSum=1.646;SOR=0.368;VarDP=31 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:48:99:48:0,123 0/1:20,11:31:99:.:236,0,449:7,13,5,6 +chrX 2548230 . C CTT 364.97 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=10.92;BaseQRankSum=-2.773;DP=101;ExcessHet=0.0000;FS=0.000;MQ=59.37;MQRankSum=-1.357;QD=10.92;ReadPosRankSum=-1.383;SOR=0.593;VarDP=37 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:48:99:48:0,123 0/1:18,19:37:99:.:404,0,476:8,10,9,10 +chrX 2548349 . C A 501 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=5.06;BaseQRankSum=-1.713;DP=107;ExcessHet=0.0000;FS=3.595;MQ=59.90;MQRankSum=1.051;QD=5.06;ReadPosRankSum=0.432;SOR=0.495;VarDP=105 GT:AD:DP:GQ:PL:SB 1:29,30:59:5:5,0:16,13,14,16 0/1:25,21:46:99:526,0,721:15,10,11,10 +chrX 2549533 . C G 714 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=6.05;BaseQRankSum=1.576;DP=129;ExcessHet=0.0000;FS=3.255;MQ=60.00;MQRankSum=0;QD=6.05;ReadPosRankSum=1.015;SOR=0.767;VarDP=123 GT:AD:DP:GQ:PL:SB 1:35,35:70:60:60,0:17,18,18,17 0/1:27,26:53:99:684,0,759:12,15,15,11 +chrX 2549572 . T TG 686.97 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=15.13;BaseQRankSum=0.338;DP=120;ExcessHet=0.0000;FS=4.201;MQ=60.00;MQRankSum=0;QD=15.13;ReadPosRankSum=-1.3;SOR=0.247;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:80:68:0,80 0/1:24,24:48:99:.:726,0,740:16,8,12,12 +chrX 2550033 . C T 1103 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=10.03;BaseQRankSum=1.336;DP=118;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=10.03;ReadPosRankSum=0.982;SOR=0.678;VarDP=113 GT:AD:DP:GQ:PL:SB 1:23,26:49:99:99,0:15,8,14,12 0/1:27,37:64:99:1034,0,651:13,14,21,16 +chrX 2550391 . C T 881 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=6.85;BaseQRankSum=1.559;DP=134;ExcessHet=0.0000;FS=4.145;MQ=54.94;MQRankSum=-5.527;QD=6.85;ReadPosRankSum=0.144;SOR=1.053;VarDP=133 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:35,35:70:21:.:.:21,0:.:15,20,12,23 0|1:39,24:63:99:0|1:2550391_C_T:890,0,1554:2550391:21,18,12,12 +chrX 2550392 . C G 881 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=6.85;BaseQRankSum=1.286;DP=135;ExcessHet=0.0000;FS=4.145;MQ=54.98;MQRankSum=-5.527;QD=6.85;ReadPosRankSum=0.156;SOR=1.053;VarDP=133 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:35,35:70:21:.:.:21,0:.:15,20,12,23 0|1:39,24:63:99:0|1:2550391_C_T:890,0,1554:2550391:21,18,12,12 +chrX 2550499 . T C 4018 . AC=3;AF=1.00;AN=3;AS_AltDP=131;AS_QD=30.90;DP=135;ExcessHet=0.0000;FS=0.000;MQ=57.28;QD=30.90;SOR=0.739;VarDP=131 GT:AD:DP:GQ:PL:SB 1:0,63:63:99:1873,0:0,0,35,28 1/1:0,68:68:99:2175,204,0:0,0,32,36 +chrX 2551306 . ATT A 318.97 . AC=2;AF=0.667;AN=3;AS_AltDP=26;AS_QD=6.28;BaseQRankSum=1.506;DP=91;ExcessHet=0.0000;FS=7.296;MQ=59.82;MQRankSum=1.112;QD=6.28;ReadPosRankSum=0.583;SOR=1.075;VarDP=57 GT:AD:DP:GQ:PL:SB 1:13,14:27:54:54,0:9,4,7,7 0/1:18,12:30:99:304,0,440:9,9,3,9 +chrX 2551343 . G T 1811 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=23.60;BaseQRankSum=1.6;DP=80;ExcessHet=0.0000;FS=3.771;MQ=59.43;MQRankSum=-0.915;QD=23.60;ReadPosRankSum=0.314;SOR=0.345;VarDP=78 GT:AD:DP:GQ:PL:SB 1:0,43:43:99:1329,0:0,0,21,22 0/1:17,18:35:99:512,0,401:6,11,8,10 +chrX 2551600 . C T 140 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=2.30;BaseQRankSum=3.579;DP=140;ExcessHet=0.0000;FS=0.000;MQ=59.94;MQRankSum=-0.973;QD=2.30;ReadPosRankSum=0.633;SOR=0.801;VarDP=74 GT:AD:DP:GQ:MIN_DP:PL:SB 1:37,37:74:99:.:170,0:18,19,17,20 0/0:.:65:93:65:0,93,1187 +chrX 2552213 . T C 1104 . AC=2;AF=0.667;AN=3;AS_AltDP=74;AS_QD=9.22;BaseQRankSum=-1.762;DP=134;ExcessHet=0.0000;FS=5.620;MQ=59.96;MQRankSum=0;QD=9.22;ReadPosRankSum=-0.113;SOR=0.789;VarDP=123 GT:AD:DP:GQ:PL:SB 1:27,38:65:99:277,0:15,12,18,20 0/1:22,36:58:99:857,0,582:12,10,15,21 +chrX 2552352 . T G 812 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=8.34;BaseQRankSum=0.076;DP=105;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=8.34;ReadPosRankSum=0.653;SOR=0.763;VarDP=101 GT:AD:DP:GQ:PL:SB 1:29,30:59:35:35,0:14,15,15,15 0/1:14,28:42:99:807,0,360:9,5,17,11 +chrX 2552458 . A G 816 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=11.75;BaseQRankSum=0.485;DP=142;ExcessHet=0.0000;FS=0.891;MQ=60.00;MQRankSum=0;QD=11.75;ReadPosRankSum=-0.062;SOR=0.844;VarDP=72 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:99:68:0,293 0/1:40,32:72:99:.:846,0,1093:19,21,14,18 +chrX 2552811 . A G 3935 . AC=3;AF=1.00;AN=3;AS_AltDP=121;AS_QD=32.77;DP=126;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.77;SOR=0.850;VarDP=121 GT:AD:DP:GQ:PL:SB 1:0,70:70:99:2278,0:0,0,36,34 1/1:0,51:51:99:1687,153,0:0,0,29,22 +chrX 2553051 . T G 1101 . AC=2;AF=0.667;AN=3;AS_AltDP=69;AS_QD=8.98;BaseQRankSum=0.397;DP=130;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=8.98;ReadPosRankSum=0.181;SOR=0.733;VarDP=126 GT:AD:DP:GQ:PL:SB 1:26,36:62:99:236,0:13,13,20,16 0/1:31,33:64:99:895,0,845:17,14,17,16 +chrX 2553080 . G A 1097 . AC=2;AF=0.667;AN=3;AS_AltDP=69;AS_QD=9.09;BaseQRankSum=-0.014;DP=125;ExcessHet=0.0000;FS=0.671;MQ=60.00;MQRankSum=0;QD=9.09;ReadPosRankSum=-0.343;SOR=0.790;VarDP=124 GT:AD:DP:GQ:PL:SB 1:29,37:66:99:243,0:17,12,21,16 0/1:26,32:58:99:884,0,670:12,14,17,15 +chrX 2553273 . A G 857 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=16.13;BaseQRankSum=-2.458;DP=112;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=16.13;ReadPosRankSum=-0.077;SOR=0.646;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:11:56:0,11 0/1:22,33:55:99:.:887,0,600:9,13,14,19 +chrX 2553449 . C G 627 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=12.17;BaseQRankSum=-1.896;DP=122;ExcessHet=0.0000;FS=2.277;MQ=59.90;MQRankSum=-1.04;QD=12.17;ReadPosRankSum=-0.451;SOR=1.051;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:99:66:0,329 0/1:29,25:54:99:.:657,0,836:14,15,10,15 +chrX 2553493 . G A 425 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=3.61;BaseQRankSum=0.591;DP=128;ExcessHet=0.0000;FS=1.426;MQ=59.96;MQRankSum=0;QD=3.61;ReadPosRankSum=1.155;SOR=0.548;VarDP=126 GT:AD:DP:GQ:PL:SB 1:36,37:73:9:9,0:15,21,20,17 0/1:35,18:53:99:446,0,997:17,18,7,11 +chrX 2553606 . C G 639 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=12.16;BaseQRankSum=0.892;DP=133;ExcessHet=0.0000;FS=7.405;MQ=60.00;MQRankSum=0;QD=12.16;ReadPosRankSum=0.516;SOR=0.654;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:77:99:77:0,135 0/1:30,25:55:99:.:669,0,828:11,19,14,11 +chrX 2553682 . G T 893 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=7.33;BaseQRankSum=1.498;DP=134;ExcessHet=0.0000;FS=1.417;MQ=59.96;MQRankSum=1.09;QD=7.33;ReadPosRankSum=0.109;SOR=0.587;VarDP=126 GT:AD:DP:GQ:PL:SB 1:32,36:68:99:179,0:16,16,16,20 0/1:31,27:58:99:744,0,858:13,18,16,11 +chrX 2553875 . G C 4225 . AC=3;AF=1.00;AN=3;AS_AltDP=133;AS_QD=31.99;DP=135;ExcessHet=0.0000;FS=0.000;MQ=59.85;QD=31.99;SOR=0.870;VarDP=133 GT:AD:DP:GQ:PL:SB 1:0,71:71:99:2286,0:0,0,39,32 1/1:0,62:62:99:1969,185,0:0,0,33,29 +chrX 2553910 . T C 998 . AC=2;AF=0.667;AN=3;AS_AltDP=77;AS_QD=6.95;BaseQRankSum=-0.298;DP=153;ExcessHet=0.0000;FS=2.102;MQ=59.87;MQRankSum=1.073;QD=6.95;ReadPosRankSum=-0.294;SOR=0.518;VarDP=148 GT:AD:DP:GQ:PL:SB 1:38,41:79:84:84,0:21,17,26,15 0/1:33,36:69:99:944,0,891:23,10,18,18 +chrX 2553933 . G T 970 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=13.33;BaseQRankSum=2.486;DP=138;ExcessHet=0.0000;FS=6.189;MQ=59.90;MQRankSum=1.013;QD=13.33;ReadPosRankSum=0.371;SOR=0.274;VarDP=75 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:76:47:61:0,47 0/1:38,37:75:99:.:1000,0,920:26,12,20,17 +chrX 2554386 . G A 4094 . AC=3;AF=1.00;AN=3;AS_AltDP=124;AS_QD=33.26;DP=129;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.26;SOR=0.793;VarDP=124 GT:AD:DP:GQ:PL:SB 1:0,61:61:99:2055,0:0,0,31,30 1/1:0,63:63:99:2069,189,0:0,0,28,35 +chrX 2554760 . A C 447 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=9.35;BaseQRankSum=-1.526;DP=113;ExcessHet=0.0000;FS=0.000;MQ=59.83;MQRankSum=0.811;QD=9.35;ReadPosRankSum=0.702;SOR=0.671;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:99:60:0,1673 0/1:32,19:51:99:.:477,0,933:15,17,9,10 +chrX 2554837 . C T 2275 . AC=2;AF=0.667;AN=3;AS_AltDP=74;AS_QD=21.15;BaseQRankSum=3.179;DP=114;ExcessHet=0.0000;FS=0.000;MQ=59.96;MQRankSum=0;QD=21.15;ReadPosRankSum=0.416;SOR=0.631;VarDP=109 GT:AD:DP:GQ:PL:SB 1:1,53:54:99:1782,0:0,1,29,24 0/1:34,21:55:99:523,0,952:21,13,14,7 +chrX 2555865 . T G 3343 . AC=3;AF=1.00;AN=3;AS_AltDP=109;AS_QD=30.94;DP=113;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.94;SOR=0.827;VarDP=109 GT:AD:DP:GQ:PL:SB 1:0,45:45:99:1476,0:0,0,22,23 1/1:0,64:64:99:1897,190,0:0,0,29,35 +chrX 2555935 . C T 3439 . AC=3;AF=1.00;AN=3;AS_AltDP=106;AS_QD=32.42;BaseQRankSum=1.971;DP=112;ExcessHet=0.0000;FS=3.481;MQ=60.00;MQRankSum=0;QD=32.42;ReadPosRankSum=0.309;SOR=0.595;VarDP=107 GT:AD:DP:GQ:PL:SB 1:1,55:56:99:1766,0:1,0,27,28 1/1:0,51:51:99:1703,153,0:0,0,20,31 +chrX 2557033 . A G 493 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=4.43;BaseQRankSum=-1.229;DP=124;ExcessHet=0.0000;FS=17.599;MQ=60.00;MQRankSum=0;QD=4.43;ReadPosRankSum=0.03;SOR=1.237;VarDP=118 GT:AD:DP:GQ:PL:SB 1:32,36:68:79:79,0:12,20,24,12 0/1:31,19:50:99:444,0,887:14,17,11,8 +chrX 2560698 . C T 3550 . AC=3;AF=1.00;AN=3;AS_AltDP=105;AS_QD=34.10;DP=107;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=34.10;SOR=1.115;VarDP=105 GT:AD:DP:GQ:PL:SB 1:0,45:45:99:1534,0:0,0,14,31 1/1:0,60:60:99:2046,180,0:0,0,29,31 +chrX 2561193 . GTA G 3540.97 . AC=3;AF=1.00;AN=3;AS_AltDP=95;AS_QD=28.57;DP=114;ExcessHet=0.0000;FS=0.000;MQ=59.77;QD=37.68;SOR=0.802;VarDP=95 GT:AD:DP:GQ:PL:SB 1:0,40:40:99:1506,0:0,0,19,21 1/1:0,55:55:99:2074,166,0:0,0,26,29 +chrX 2561210 . CT C 462.97 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=10.04;BaseQRankSum=1.471;DP=119;ExcessHet=0.0000;FS=4.022;MQ=59.73;MQRankSum=1.081;QD=10.04;ReadPosRankSum=1.032;SOR=0.840;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:99:56:0,675 0/1:24,26:50:99:.:502,0,422:14,10,11,15 +chrX 2562402 . CTATATA C,CTA 2458.97 . AC=0,2;AF=0.00,0.667;AN=3;AS_AltDP=0,57;AS_QD=10.71,33.76;BaseQRankSum=-0.073;DP=108;ExcessHet=0.0000;FS=2.329;MQ=60.00;MQRankSum=0;QD=33.76;ReadPosRankSum=1.034;SOR=0.884;VarDP=74 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 2:0,0,35:35:99:.:.:1690,1508,0:.:0,0,21,14 0|2:17,0,22:39:99:0|1:2562402_CTATA_C:808,859,1524,0,665,598:2562402:8,9,11,11 +chrX 2562404 . A *,C 1626 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=22,11;AS_QD=0.00,32.18;BaseQRankSum=3.618;DP=105;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=48.71;ReadPosRankSum=-0.816;SOR=0.302;VarDP=34 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,35,0:35:99:.:.:1690,0,1599:.:0,0,21,14 1|2:1,22,11:34:99:1|0:2562402_CTATA_C:1656,434,558,854,0,1078:2562402:1,0,16,17 +chrX 2562406 . A *,C 1626 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=22,11;AS_QD=0.00,29.34;BaseQRankSum=0;DP=107;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=48.71;ReadPosRankSum=-0.765;SOR=0.302;VarDP=34 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,35,0:35:99:.:.:1690,0,1599:.:0,0,21,14 1|2:1,22,11:34:99:1|0:2562402_CTATA_C:1656,434,558,854,0,1078:2562402:1,0,16,17 +chrX 2562408 . A *,C 1660 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=0,35;AS_QD=30.50,35.19;DP=107;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=48.29;SOR=1.148;VarDP=35 GT:AD:DP:GQ:MIN_DP:PL:SB 2:0,0,35:35:99:.:1690,1508,0:0,0,21,14 0/0:.:60:87:60:0,87,1412,87,1412,1412 +chrX 2562945 . C A 3539 . AC=3;AF=1.00;AN=3;AS_AltDP=113;AS_QD=30.77;BaseQRankSum=2.913;DP=121;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=30.77;ReadPosRankSum=1.524;SOR=0.379;VarDP=116 GT:AD:DP:GQ:PL:SB 1:1,57:58:99:1778,0:0,1,32,25 1/1:2,56:58:99:1791,124,0:1,1,24,32 +chrX 2564134 . A AT 1075.97 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=15.27;BaseQRankSum=-1.011;DP=94;ExcessHet=0.0000;FS=29.263;MQ=59.42;MQRankSum=0;QD=15.27;ReadPosRankSum=0.783;SOR=1.357;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,36:36:99:773,0:0,0,24,12 0/1:16,21:37:99:342,0,256:3,13,14,7 +chrX 2564298 . A G 715 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=13.30;BaseQRankSum=-1.567;DP=121;ExcessHet=0.0000;FS=9.804;MQ=60.00;MQRankSum=0;QD=13.30;ReadPosRankSum=-0.058;SOR=1.535;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:94:63:0,94 0/1:25,31:56:99:.:745,0,647:11,14,21,10 +chrX 2564726 . T C 862 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=15.38;BaseQRankSum=-0.75;DP=123;ExcessHet=0.0000;FS=2.245;MQ=60.00;MQRankSum=0;QD=15.38;ReadPosRankSum=-0.503;SOR=0.718;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:94:63:0,94 0/1:25,33:58:99:.:892,0,655:14,11,15,18 +chrX 2564788 . C A 3565 . AC=3;AF=1.00;AN=3;AS_AltDP=109;AS_QD=32.98;DP=117;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.98;SOR=1.148;VarDP=109 GT:AD:DP:GQ:PL:SB 1:0,48:48:99:1618,0:0,0,31,17 1/1:0,61:61:99:1977,183,0:0,0,34,27 +chrX 2565013 . A G 913 . AC=2;AF=0.667;AN=3;AS_AltDP=67;AS_QD=7.54;BaseQRankSum=0.217;DP=131;ExcessHet=0.0000;FS=6.967;MQ=59.85;MQRankSum=1.887;QD=7.54;ReadPosRankSum=-1.705;SOR=1.306;VarDP=125 GT:AD:DP:GQ:PL:SB 1:31,35:66:99:138,0:13,18,11,24 0/1:27,32:59:99:805,0,727:14,13,12,20 +chrX 2565047 . C A 970 . AC=2;AF=0.667;AN=3;AS_AltDP=66;AS_QD=8.00;BaseQRankSum=1.511;DP=127;ExcessHet=0.0000;FS=1.457;MQ=59.89;MQRankSum=1.448;QD=8.00;ReadPosRankSum=1.088;SOR=0.892;VarDP=125 GT:AD:DP:GQ:PL:SB 1:32,32:64:81:81,0:11,21,13,19 0/1:27,34:61:99:919,0,611:14,13,12,22 +chrX 2565098 . CA C 2541.97 . AC=3;AF=1.00;AN=3;AS_AltDP=94;AS_QD=26.89;BaseQRankSum=-0.518;DP=124;ExcessHet=0.0000;FS=2.743;MQ=59.96;MQRankSum=0;QD=26.89;ReadPosRankSum=1.431;SOR=0.269;VarDP=96 GT:AD:DP:GQ:PL:SB 1:1,39:40:99:1071,0:0,1,16,23 1/1:1,55:56:99:1510,141,0:0,1,19,36 +chrX 2565126 . T C 785 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=12.35;BaseQRankSum=-0.496;DP=136;ExcessHet=0.0000;FS=0.000;MQ=59.93;MQRankSum=0.971;QD=12.35;ReadPosRankSum=1.08;SOR=0.700;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:99:68:0,1800 0/1:35,31:66:99:.:815,0,947:17,18,15,16 +chrX 2565248 . T G 4542 . AC=3;AF=1.00;AN=3;AS_AltDP=145;AS_QD=31.53;DP=151;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.53;SOR=1.132;VarDP=145 GT:AD:DP:GQ:PL:SB 1:0,72:72:99:2315,0:0,0,47,25 1/1:0,73:73:99:2257,219,0:0,0,39,34 +chrX 2565404 . G A 975 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=16.21;BaseQRankSum=-0.164;DP=133;ExcessHet=0.0000;FS=0.993;MQ=60.00;MQRankSum=0;QD=16.21;ReadPosRankSum=-0.21;SOR=0.914;VarDP=62 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:69:99:69:.:.:0,312 0|1:24,38:62:99:.:0|1:2565404_G_A:1005,0,539:2565404:12,12,17,21 +chrX 2565420 . A G 5072 . AC=3;AF=1.00;AN=3;AS_AltDP=135;AS_QD=30.70;DP=136;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=37.79;SOR=0.801;VarDP=135 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,71:71:99:.:.:2608,0:.:0,0,33,38 1|1:0,64:64:99:0|1:2565404_G_A:2494,192,0:2565404:0,0,31,33 +chrX 2565704 . C T 569 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=13.31;BaseQRankSum=-1.059;DP=120;ExcessHet=0.0000;FS=2.561;MQ=60.00;MQRankSum=0;QD=13.31;ReadPosRankSum=0.796;SOR=1.034;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:72:99:72:0,1792 0/1:23,22:45:99:.:599,0,653:12,11,9,13 +chrX 2565834 . T C 2436 . AC=2;AF=0.667;AN=3;AS_AltDP=79;AS_QD=23.49;BaseQRankSum=-1.326;DP=111;ExcessHet=0.0000;FS=1.858;MQ=60.00;MQRankSum=0;QD=23.49;ReadPosRankSum=-0.554;SOR=0.464;VarDP=105 GT:AD:DP:GQ:PL:SB 1:0,55:55:99:1852,0:0,0,26,29 0/1:26,24:50:99:614,0,694:15,11,14,10 +chrX 2565902 . G A 744 . AC=2;AF=0.667;AN=3;AS_AltDP=66;AS_QD=5.65;BaseQRankSum=3.512;DP=140;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=5.65;ReadPosRankSum=1.828;SOR=0.743;VarDP=137 GT:AD:DP:GQ:PL:SB 1:42,38:80:32:32,0:25,17,20,18 0/1:29,28:57:99:742,0,732:15,14,18,10 +chrX 2566282 . C T 550 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=11.37;BaseQRankSum=0.407;DP=120;ExcessHet=0.0000;FS=2.388;MQ=60.00;MQRankSum=0;QD=11.37;ReadPosRankSum=-0.057;SOR=0.730;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:50:66:0,50 0/1:29,22:51:99:.:580,0,787:13,16,12,10 +chrX 2567239 . C A 631 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=12.71;BaseQRankSum=-2.798;DP=119;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=12.71;ReadPosRankSum=-1.044;SOR=0.857;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:50:66:0,50 0/1:26,26:52:99:.:661,0,746:10,16,9,17 +chrX 2567642 . ATT A,AT 1613.97 . AC=0,2;AF=0.00,0.667;AN=3;AS_AltDP=3,68;AS_QD=0.00,17.97;BaseQRankSum=1.059;DP=120;ExcessHet=0.0000;FS=0.000;MQ=59.89;MQRankSum=0;QD=17.40;ReadPosRankSum=-0.487;SOR=0.676;VarDP=95 GT:AD:DP:GQ:PL:SB 2:0,3,48:51:99:1259,1270,0:0,0,27,24 0/2:24,0,20:44:99:394,465,1000,0,534,474:13,11,11,9 +chrX 2568939 . TG T 793.97 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=14.12;BaseQRankSum=1.644;DP=126;ExcessHet=0.0000;FS=0.992;MQ=60.00;MQRankSum=0;QD=14.12;ReadPosRankSum=-0.655;SOR=0.567;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:99:66:0,379 0/1:27,32:59:99:.:833,0,699:10,17,13,19 +chrX 2570081 . T C 4405 . AC=3;AF=1.00;AN=3;AS_AltDP=136;AS_QD=32.61;DP=138;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.61;SOR=1.066;VarDP=136 GT:AD:DP:GQ:PL:SB 1:0,72:72:99:2352,0:0,0,43,29 1/1:0,64:64:99:2083,192,0:0,0,36,28 +chrX 2570221 . G A 788 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=14.10;BaseQRankSum=0.47;DP=134;ExcessHet=0.0000;FS=3.657;MQ=60.00;MQRankSum=0;QD=14.10;ReadPosRankSum=-0.545;SOR=0.806;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:73:99:73:0,913 0/1:28,30:58:99:.:818,0,738:12,16,17,13 +chrX 2571823 . A G 712 . AC=2;AF=0.667;AN=3;AS_AltDP=49;AS_QD=7.13;BaseQRankSum=2.076;DP=111;ExcessHet=0.0000;FS=0.000;MQ=59.91;MQRankSum=0;QD=7.13;ReadPosRankSum=1.047;SOR=0.700;VarDP=104 GT:AD:DP:GQ:PL:SB 1:21,24:45:59:59,0:8,13,11,13 0/1:34,25:59:99:683,0,915:20,14,13,12 +chrX 2571935 . C T 861 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=14.14;BaseQRankSum=-0.629;DP=129;ExcessHet=0.0000;FS=0.000;MQ=59.87;MQRankSum=-0.862;QD=14.14;ReadPosRankSum=-1.155;SOR=0.814;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:84:63:0,84 0/1:28,35:63:99:.:891,0,710:16,12,21,14 +chrX 2572719 . T C 489 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=10.38;BaseQRankSum=0.139;DP=121;ExcessHet=0.0000;FS=13.544;MQ=59.65;MQRankSum=0;QD=10.38;ReadPosRankSum=-1.081;SOR=0.973;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:84:63:0,84 0/1:29,21:50:99:.:519,0,809:9,20,13,8 +chrX 2573055 . C T 1443 . AC=2;AF=0.667;AN=3;AS_AltDP=67;AS_QD=11.33;BaseQRankSum=1.31;DP=130;ExcessHet=0.0000;FS=1.393;MQ=60.00;MQRankSum=0;QD=11.33;ReadPosRankSum=-1.35;SOR=0.823;VarDP=130 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:28,29:57:4:.:.:4,0:.:11,17,14,15 0|1:35,38:73:99:0|1:2573055_C_T:1469,0,1355:2573055:21,14,17,21 +chrX 2573059 . C G 1439 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=20.12;BaseQRankSum=0.359;DP=136;ExcessHet=0.0000;FS=6.137;MQ=60.00;MQRankSum=0;QD=20.12;ReadPosRankSum=-0.696;SOR=0.672;VarDP=73 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:99:63:.:.:0,134 0|1:35,38:73:99:.:0|1:2573055_C_T:1469,0,1355:2573055:21,14,17,21 +chrX 2573293 . A C 3409 . AC=3;AF=1.00;AN=3;AS_AltDP=106;AS_QD=32.44;DP=108;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.44;SOR=0.853;VarDP=106 GT:AD:DP:GQ:PL:SB 1:0,48:48:99:1533,0:0,0,24,24 1/1:0,58:58:99:1906,174,0:0,0,25,33 +chrX 2573378 . C G 3780 . AC=3;AF=1.00;AN=3;AS_AltDP=118;AS_QD=32.29;DP=119;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.29;SOR=0.762;VarDP=118 GT:AD:DP:GQ:PL:SB 1:0,62:62:99:1985,0:0,0,35,27 1/1:0,56:56:99:1825,167,0:0,0,22,34 +chrX 2573438 . T C 726 . AC=2;AF=0.667;AN=3;AS_AltDP=50;AS_QD=6.52;BaseQRankSum=1.514;DP=118;ExcessHet=0.0000;FS=3.397;MQ=60.00;MQRankSum=0;QD=6.52;ReadPosRankSum=0.137;SOR=0.908;VarDP=116 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:30,31:61:67:.:.:67,0:.:15,15,19,12 0|1:36,19:55:99:0|1:2573438_T_C:689,0,1429:2573438:17,19,9,10 +chrX 2573442 . T C 783 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=7.01;BaseQRankSum=0.126;DP=117;ExcessHet=0.0000;FS=3.400;MQ=60.00;MQRankSum=0;QD=7.01;ReadPosRankSum=-0.118;SOR=0.972;VarDP=116 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:29,32:61:99:.:.:124,0:.:15,14,20,12 0|1:36,19:55:99:0|1:2573438_T_C:689,0,1429:2573438:17,19,9,10 +chrX 2573458 . T C 559 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=10.71;BaseQRankSum=-1.13;DP=124;ExcessHet=0.0000;FS=1.105;MQ=60.00;MQRankSum=0;QD=10.71;ReadPosRankSum=1.258;SOR=0.719;VarDP=55 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:66:99:66:.:.:0,278 0|1:38,17:55:99:.:0|1:2573438_T_C:589,0,1478:2573438:18,20,9,8 +chrX 2573630 . G A 749 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=13.20;BaseQRankSum=1.108;DP=127;ExcessHet=0.0000;FS=2.188;MQ=60.00;MQRankSum=0;QD=13.20;ReadPosRankSum=0.44;SOR=0.420;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:99:66:0,278 0/1:29,30:59:99:.:779,0,721:12,17,15,15 +chrX 2573679 . C T 822 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=14.20;BaseQRankSum=-0.232;DP=129;ExcessHet=0.0000;FS=0.000;MQ=59.75;MQRankSum=-0.902;QD=14.20;ReadPosRankSum=-0.845;SOR=0.801;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:10:68:0,10 0/1:28,32:60:99:.:852,0,717:13,15,14,18 +chrX 2573854 . T C 2854 . AC=3;AF=1.00;AN=3;AS_AltDP=76;AS_QD=24.24;DP=77;ExcessHet=0.0000;FS=0.000;MQ=59.99;QD=37.95;SOR=1.270;VarDP=76 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,43:43:99:.:.:1611,0:.:0,0,26,17 1|1:0,33:33:99:0|1:2573854_T_C:1273,99,0:2573854:0,0,21,12 +chrX 2573860 . CA C 2681.97 . AC=3;AF=1.00;AN=3;AS_AltDP=79;AS_QD=31.64;BaseQRankSum=-0.725;DP=104;ExcessHet=0.0000;FS=27.176;MQ=59.51;MQRankSum=4.3;QD=31.64;ReadPosRankSum=1.102;SOR=0.962;VarDP=86 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:3,44:47:99:.:.:1509,0:.:0,3,27,17 1|1:4,35:39:36:0|1:2573854_T_C:1212,36,0:2573854:0,4,22,13 +chrX 2573899 . A G 565 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=15.66;BaseQRankSum=-0.807;DP=108;ExcessHet=0.0000;FS=1.290;MQ=60.00;MQRankSum=0;QD=15.66;ReadPosRankSum=0.015;SOR=1.085;VarDP=38 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:94:68:0,94 0/1:17,21:38:99:.:595,0,442:8,9,8,13 +chrX 2573985 . ATGTGTGTGTGTGTG A,ATG 3832.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=71,37;AS_QD=25.87,27.49;DP=128;ExcessHet=0.0000;FS=0.000;MQ=59.63;QD=35.85;SOR=0.849;VarDP=108 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 2:0,32,37:69:99:.:.:2111,306,0:.:0,0,41,28 1|1:0,39,0:39:99:0|1:2573985_ATGTGTGTGTGTGTG_A:1761,120,0,1761,120,1761:2573985:0,0,17,22 +chrX 2574017 . GCGCGCGCGCGCGCGCGCGCACGCA G 275.97 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=4.44;BaseQRankSum=-0.823;DP=119;ExcessHet=0.0000;FS=12.431;MQ=59.41;MQRankSum=0;QD=4.44;ReadPosRankSum=0.294;SOR=0.148;VarDP=71 GT:AD:DP:GQ:MIN_DP:PL:SB 1:33,38:71:99:.:315,0:24,9,19,19 0/0:.:41:82:41:0,82,1215 +chrX 2574019 . GCGCGCGCGCGCGCGCGCACGCA *,G 1850.97 . AC=1,2;AF=0.333,0.667;AN=3;AS_AltDP=0,44;AS_QD=0.00,30.11;DP=125;ExcessHet=0.0000;FS=18.134;MQ=59.07;MQRankSum=4.797;QD=41.09;SOR=0.412;VarDP=46 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:33,38,0:71:99:.:.:315,0,1328:.:24,9,19,19 2|2:2,0,44:46:48:0|1:2573985_ATGTGTGTGTGTGTG_A:1890,1896,1980,48,132,0:2573985:1,1,19,25 +chrX 2574261 . C T 3930 . AC=3;AF=1.00;AN=3;AS_AltDP=122;AS_QD=32.20;BaseQRankSum=-0.323;DP=126;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=32.20;ReadPosRankSum=0.829;SOR=0.236;VarDP=123 GT:AD:DP:GQ:PL:SB 1:0,77:77:99:2491,0:0,0,36,41 1/1:1,45:46:99:1469,104,0:0,1,24,21 +chrX 2574493 . T C 681 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=13.17;BaseQRankSum=-1.218;DP=129;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.17;ReadPosRankSum=-0.156;SOR=0.562;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:72:99:72:0,1448 0/1:27,27:54:99:.:711,0,756:11,16,12,15 +chrX 2574851 . A G 5250 . AC=3;AF=1.00;AN=3;AS_AltDP=122;AS_QD=33.61;DP=125;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.28;SOR=1.255;VarDP=122 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,68:68:99:.:.:2939,0:.:0,0,42,26 1|1:0,54:54:99:0|1:2574851_A_G:2341,162,0:2574851:0,0,33,21 +chrX 2574862 . T A 5070 . AC=3;AF=1.00;AN=3;AS_AltDP=117;AS_QD=33.03;DP=120;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.59;SOR=1.473;VarDP=117 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,65:65:99:.:.:2828,0:.:0,0,42,23 1|1:0,52:52:99:0|1:2574851_A_G:2272,156,0:2574851:0,0,34,18 +chrX 2575184 . C T 717 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=5.79;BaseQRankSum=1.788;DP=131;ExcessHet=0.0000;FS=6.581;MQ=60.00;MQRankSum=0;QD=5.79;ReadPosRankSum=0.108;SOR=0.604;VarDP=129 GT:AD:DP:GQ:PL:SB 1:33,39:72:99:188,0:19,14,15,24 0/1:36,21:57:99:559,0,1015:21,15,13,8 +chrX 2575221 . C T 569 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=9.98;BaseQRankSum=1.56;DP=125;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=9.98;ReadPosRankSum=-0.768;SOR=0.730;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:45:62:0,45 0/1:37,23:60:99:.:599,0,986:18,19,12,11 +chrX 2575263 . C T 1086 . AC=2;AF=0.667;AN=3;AS_AltDP=71;AS_QD=9.46;BaseQRankSum=0.234;DP=119;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=9.46;ReadPosRankSum=-0.04;SOR=0.735;VarDP=118 GT:AD:DP:GQ:PL:SB 1:31,33:64:34:34,0:14,17,19,14 0/1:16,38:54:99:1082,0,364:10,6,18,20 +chrX 2575344 . C G 621 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=9.86;BaseQRankSum=2.743;DP=135;ExcessHet=0.0000;FS=0.961;MQ=60.00;MQRankSum=0;QD=9.86;ReadPosRankSum=-0.04;SOR=0.885;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:69:99:69:0,1800 0/1:41,25:66:99:.:651,0,1051:20,21,11,14 +chrX 2575491 . T C 3747 . AC=3;AF=1.00;AN=3;AS_AltDP=119;AS_QD=31.74;DP=126;ExcessHet=0.0000;FS=0.000;MQ=59.86;QD=31.74;SOR=0.816;VarDP=119 GT:AD:DP:GQ:PL:SB 1:0,67:67:99:2076,0:0,0,34,33 1/1:0,52:52:99:1701,156,0:0,0,29,23 +chrX 2575535 . T C 815 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=7.16;BaseQRankSum=0.259;DP=126;ExcessHet=0.0000;FS=4.486;MQ=59.82;MQRankSum=0;QD=7.16;ReadPosRankSum=1.255;SOR=1.011;VarDP=118 GT:AD:DP:GQ:PL:SB 1:30,34:64:99:124,0:15,15,18,16 0/1:26,28:54:99:721,0,732:12,14,18,10 +chrX 2575943 . G A 1112 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=19.03;BaseQRankSum=2.077;DP=125;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=19.03;ReadPosRankSum=-0.081;SOR=0.818;VarDP=60 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:65:99:65:.:.:0,125 0|1:29,31:60:99:.:0|1:2575943_G_A:1142,0,991:2575943:15,14,17,14 +chrX 2575972 . T TC 1113.97 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=20.59;BaseQRankSum=0.607;DP=121;ExcessHet=0.0000;FS=2.274;MQ=60.00;MQRankSum=0;QD=20.59;ReadPosRankSum=-0.548;SOR=0.877;VarDP=56 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:65:99:65:.:.:0,125 0|1:26,30:56:99:.:0|1:2575943_G_A:1153,0,988:2575943:12,14,17,13 +chrX 2576017 . T C 763 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=14.42;BaseQRankSum=-0.58;DP=121;ExcessHet=0.0000;FS=1.028;MQ=60.00;MQRankSum=0;QD=14.42;ReadPosRankSum=0.27;SOR=0.892;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,125 0/1:26,29:55:99:.:793,0,707:12,14,12,17 +chrX 2576056 . C A 868 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=18.71;BaseQRankSum=-2.557;DP=115;ExcessHet=0.0000;FS=0.000;MQ=59.60;MQRankSum=1.584;QD=18.71;ReadPosRankSum=0.155;SOR=0.620;VarDP=48 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:65:99:65:.:.:0,125 0|1:22,26:48:99:.:0|1:2576056_C_A:898,0,764:2576056:8,14,10,16 +chrX 2576078 . GTTTTTT G,GTT,GTTT 2059.97 . AC=0,2,1;AF=0.00,0.667,0.333;AN=3;AS_AltDP=28,36,21;AS_QD=9.74,31.86,28.21;BaseQRankSum=2.182;DP=111;ExcessHet=0.0000;FS=1.582;MQ=59.37;MQRankSum=-0.363;QD=22.82;ReadPosRankSum=0.888;SOR=0.321;VarDP=92 GT:AD:DP:GQ:PL:SB 2:7,28,11,0:46:41:382,41,0,872:2,5,21,18 2/3:0,0,25,21:46:99:1717,1736,1819,729,837,849,995,1000,0,927:0,0,17,29 +chrX 2576086 . T G 605 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=14.43;BaseQRankSum=-1.492;DP=102;ExcessHet=0.0000;FS=2.736;MQ=58.80;MQRankSum=-1.06;QD=14.43;ReadPosRankSum=-0.494;SOR=0.318;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:41:57:0,41 0/1:23,21:44:99:.:635,0,881:7,16,9,12 +chrX 2576087 . T G 847 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=19.49;BaseQRankSum=-1.331;DP=102;ExcessHet=0.0000;FS=2.660;MQ=58.80;MQRankSum=1.058;QD=19.49;ReadPosRankSum=0.447;SOR=1.195;VarDP=45 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:64:41:57:.:.:0,41 0|1:22,23:45:99:.:0|1:2576056_C_A:877,0,824:2576056:9,13,7,16 +chrX 2576090 . T G 821 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=20.26;BaseQRankSum=0.149;DP=100;ExcessHet=0.0000;FS=2.786;MQ=58.75;MQRankSum=1.113;QD=20.26;ReadPosRankSum=0.118;SOR=1.329;VarDP=42 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:64:41:57:.:.:0,41 0|1:20,22:42:99:.:0|1:2576056_C_A:851,0,763:2576056:9,11,7,15 +chrX 2576247 . G A 743 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=14.05;BaseQRankSum=0.293;DP=112;ExcessHet=0.0000;FS=2.305;MQ=60.00;MQRankSum=0;QD=14.05;ReadPosRankSum=-0.271;SOR=0.387;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:41:57:0,41 0/1:25,30:55:99:.:773,0,594:10,15,15,15 +chrX 2576274 . G GT 713.97 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=15.06;BaseQRankSum=0.828;DP=114;ExcessHet=0.0000;FS=4.076;MQ=60.00;MQRankSum=0;QD=15.06;ReadPosRankSum=-0.256;SOR=1.208;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:41:57:0,41 0/1:21,29:50:99:.:753,0,505:10,11,18,11 +chrX 2576412 . T C 54 . AC=1;AF=0.333;AN=3;AS_AltDP=42;AS_QD=1.05;BaseQRankSum=-0.842;DP=112;ExcessHet=0.0000;FS=9.335;MQ=60.00;MQRankSum=0;QD=1.05;ReadPosRankSum=-0.978;SOR=0.929;VarDP=80 GT:AD:DP:GQ:MIN_DP:PL:SB 1:38,42:80:84:.:84,0:15,23,25,17 0/0:.:32:27:31:0,27,923 +chrX 2576692 . CAAAA C,CAAAAA 528.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=19,34;AS_QD=9.60,12.07;BaseQRankSum=2.209;DP=113;ExcessHet=0.0000;FS=9.892;MQ=59.36;MQRankSum=0;QD=8.88;ReadPosRankSum=0.054;SOR=0.624;VarDP=64 GT:AD:DP:GQ:PL:SB 1:1,19,14:34:25:288,0,25:1,0,17,16 0/2:10,0,20:30:99:280,309,471,0,163,105:7,3,6,14 +chrX 2577478 . C T 593 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=11.75;BaseQRankSum=-1.462;DP=124;ExcessHet=0.0000;FS=5.667;MQ=60.00;MQRankSum=0;QD=11.75;ReadPosRankSum=1.341;SOR=1.175;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:99:68:0,313 0/1:29,24:53:99:.:623,0,825:16,13,9,15 +chrX 2578618 . G C 2509 . AC=2;AF=0.667;AN=3;AS_AltDP=84;AS_QD=22.27;BaseQRankSum=-2.373;DP=128;ExcessHet=0.0000;FS=2.829;MQ=60.00;MQRankSum=0;QD=22.27;ReadPosRankSum=1.046;SOR=0.459;VarDP=114 GT:AD:DP:GQ:PL:SB 1:0,53:53:99:1749,0:0,0,22,31 0/1:30,31:61:99:790,0,823:10,20,12,19 +chrX 2578760 . G C 1564 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=19.68;BaseQRankSum=-0.826;DP=128;ExcessHet=0.0000;FS=1.021;MQ=60.00;MQRankSum=0;QD=19.68;ReadPosRankSum=0.503;SOR=0.887;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,41:41:99:1189,0:0,0,12,29 0/1:22,18:40:99:405,0,571:7,15,5,13 +chrX 2578880 . G T 951 . AC=3;AF=1.00;AN=3;AS_AltDP=33;AS_QD=29.73;DP=119;ExcessHet=0.0000;FS=0.000;MQ=59.21;QD=29.73;SOR=1.179;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:699,0:0,0,10,14 1/1:0,9:9:27:282,27,0:0,0,3,6 +chrX 2578897 . CT C 662.97 . AC=3;AF=1.00;AN=3;AS_AltDP=25;AS_QD=28.08;DP=105;ExcessHet=0.0000;FS=0.000;MQ=59.72;QD=28.08;SOR=0.770;VarDP=25 GT:AD:DP:GQ:PL:SB 1:0,15:15:99:425,0:0,0,7,8 1/1:0,10:10:30:277,30,0:0,0,6,4 +chrX 2578940 . T C 2220 . AC=3;AF=1.00;AN=3;AS_AltDP=50;AS_QD=29.69;DP=79;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=45.00;SOR=1.802;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,24:24:99:.:.:1080,0:.:0,0,18,6 1|1:0,26:26:78:0|1:2578940_T_C:1170,78,0:2578940:0,0,17,9 +chrX 2578954 . G A 2490 . AC=3;AF=1.00;AN=3;AS_AltDP=56;AS_QD=30.54;DP=85;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=45.00;SOR=1.651;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,24:24:99:.:.:1080,0:.:0,0,18,6 1|1:0,32:32:96:0|1:2578940_T_C:1440,96,0:2578940:0,0,20,12 +chrX 2578968 . G C 3165 . AC=3;AF=1.00;AN=3;AS_AltDP=71;AS_QD=29.62;DP=99;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=45.00;SOR=1.545;VarDP=71 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,27:27:99:.:.:1215,0:.:0,0,19,8 1|1:0,44:44:99:0|1:2578968_G_C:1980,132,0:2578968:0,0,28,16 +chrX 2578975 . T G 3429 . AC=3;AF=1.00;AN=3;AS_AltDP=78;AS_QD=34.76;DP=107;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.35;SOR=1.409;VarDP=78 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,31:31:99:.:.:1344,0:.:0,0,21,10 1|1:0,47:47:99:0|1:2578968_G_C:2115,141,0:2578968:0,0,29,18 +chrX 2578997 . C T 1883 . AC=2;AF=0.667;AN=3;AS_AltDP=43;AS_QD=23.80;DP=94;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.49;SOR=1.179;VarDP=43 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:41:99:41:.:.:0,1062 1|1:0,43:43:99:.:0|1:2578968_G_C:1913,129,0:2578968:0,0,26,17 +chrX 2579020 . A G 1535 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=19.56;BaseQRankSum=-1.561;DP=105;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=19.56;ReadPosRankSum=1.143;SOR=0.629;VarDP=80 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,35:35:99:.:.:1070,0:.:0,0,21,14 0|1:25,20:45:99:0|1:2578968_G_C:495,0,714:2578968:16,9,13,7 +chrX 2579377 . C CT 2588.97 . AC=3;AF=1.00;AN=3;AS_AltDP=99;AS_QD=26.55;DP=118;ExcessHet=0.0000;FS=0.000;MQ=59.66;QD=26.55;SOR=0.754;VarDP=99 GT:AD:DP:GQ:PL:SB 1:0,50:50:99:1326,0:0,0,29,21 1/1:0,49:49:99:1302,147,0:0,0,19,30 +chrX 2579499 . T C 4625 . AC=3;AF=1.00;AN=3;AS_AltDP=105;AS_QD=28.63;DP=106;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.33;SOR=0.751;VarDP=105 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,49:49:99:.:.:2166,0:.:0,0,25,24 1|1:0,56:56:99:0|1:2579499_T_C:2489,169,0:2579499:0,0,26,30 +chrX 2579500 . C T 4625 . AC=3;AF=1.00;AN=3;AS_AltDP=105;AS_QD=32.45;DP=105;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.33;SOR=0.751;VarDP=105 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,49:49:99:.:.:2166,0:.:0,0,25,24 1|1:0,56:56:99:0|1:2579499_T_C:2489,169,0:2579499:0,0,26,30 +chrX 2580141 . T C 1656 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=30.65;DP=121;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.65;SOR=1.159;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,1530 1/1:0,55:55:99:.:1686,164,0:0,0,33,22 +chrX 2580387 . TAC T 1798.97 . AC=1;AF=0.333;AN=3;AS_AltDP=59;AS_QD=30.63;BaseQRankSum=2.107;DP=108;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=30.63;ReadPosRankSum=0.52;SOR=0.276;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,59:60:99:.:1838,0:1,0,29,30 0/0:.:37:21:35:0,21,968 +chrX 2581195 . GA G,GAA 508.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=12,20;AS_QD=16.83,15.30;DP=116;ExcessHet=0.0000;FS=0.000;MQ=58.25;QD=17.13;SOR=1.112;VarDP=32 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,1052,1052 1/2:0,12,20:32:99:.:548,346,443,242,0,260:0,0,13,19 +chrX 2583101 . G GT 616.97 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=10.25;BaseQRankSum=0;DP=137;ExcessHet=0.0000;FS=3.328;MQ=60.00;MQRankSum=0;QD=10.25;ReadPosRankSum=-1.525;SOR=0.509;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,1052 0/1:31,33:64:99:.:656,0,610:18,13,16,17 +chrX 2588136 . T C 318 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=5.61;BaseQRankSum=0.432;DP=105;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=5.61;ReadPosRankSum=1.662;SOR=0.620;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 1:26,36:62:99:.:348,0:11,15,16,20 0/0:.:56:24:39:0,24,897 +chrX 2591308 . G GT 1854.97 . AC=3;AF=1.00;AN=3;AS_AltDP=80;AS_QD=23.38;BaseQRankSum=-0.511;DP=115;ExcessHet=0.0000;FS=0.000;MQ=59.97;MQRankSum=0;QD=23.38;ReadPosRankSum=1.252;SOR=0.315;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,45:45:99:1093,0:0,0,29,16 1/1:1,35:36:81:801,81,0:1,0,15,20 +chrX 2593828 . TAA T 381.97 . AC=2;AF=0.667;AN=3;AS_AltDP=32;AS_QD=6.10;BaseQRankSum=1.652;DP=95;ExcessHet=0.0000;FS=2.001;MQ=59.87;MQRankSum=1.107;QD=6.10;ReadPosRankSum=1.174;SOR=0.919;VarDP=69 GT:AD:DP:GQ:PL:SB 1:18,20:38:99:122,0:6,12,13,7 0/1:19,12:31:99:299,0,466:12,7,5,7 +chrX 2594651 . C T 888 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=12.93;BaseQRankSum=0.479;DP=134;ExcessHet=0.0000;FS=6.552;MQ=60.00;MQRankSum=0;QD=12.93;ReadPosRankSum=1.589;SOR=1.568;VarDP=71 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,254 0/1:37,34:71:99:.:918,0,999:20,17,24,10 +chrX 2594676 . A G 292 . AC=1;AF=0.333;AN=3;AS_AltDP=42;AS_QD=4.47;BaseQRankSum=-1.506;DP=136;ExcessHet=0.0000;FS=0.895;MQ=60.00;MQRankSum=0;QD=4.47;ReadPosRankSum=0.943;SOR=0.816;VarDP=72 GT:AD:DP:GQ:MIN_DP:PL:SB 1:30,42:72:99:.:322,0:17,13,25,17 0/0:.:59:99:59:0,111,1485 +chrX 2595193 . G T 847 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=12.53;BaseQRankSum=-1.114;DP=139;ExcessHet=0.0000;FS=6.434;MQ=60.00;MQRankSum=0;QD=12.53;ReadPosRankSum=-0.547;SOR=0.361;VarDP=70 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:99:68:0,204 0/1:37,33:70:99:.:877,0,1014:24,13,16,17 +chrX 2597422 . G A 79 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=2.37;BaseQRankSum=-1.186;DP=110;ExcessHet=0.0000;FS=4.119;MQ=60.00;MQRankSum=0;QD=2.37;ReadPosRankSum=0.496;SOR=0.453;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 1:21,25:46:99:.:109,0:13,8,12,13 0/0:.:60:74:60:0,74,1191 +chrX 2599084 . T G 128 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=3.04;BaseQRankSum=-1.683;DP=115;ExcessHet=0.0000;FS=7.905;MQ=60.00;MQRankSum=0;QD=3.04;ReadPosRankSum=-1.079;SOR=1.082;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 1:23,29:52:99:.:158,0:9,14,18,11 0/0:.:60:74:60:0,74,1191 +chrX 2599210 . G A 105 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=2.55;BaseQRankSum=-0.68;DP=118;ExcessHet=0.0000;FS=7.933;MQ=60.00;MQRankSum=0;QD=2.55;ReadPosRankSum=-0.554;SOR=0.289;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 1:24,29:53:99:.:135,0:7,17,15,14 0/0:.:60:74:60:0,74,1191 +chrX 2599489 . CA C 152.97 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=5.19;BaseQRankSum=-1.483;DP=115;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=5.19;ReadPosRankSum=-0.019;SOR=0.836;VarDP=37 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:56:99:56:.:.:0,1386 0|1:24,13:37:99:.:0|1:2599489_CA_C:192,0,969:2599489:12,12,6,7 +chrX 2599505 . A AGAG,AG,AAGAG 3010.97 . AC=2,0,0;AF=0.667,0.00,0.00;AN=3;AS_AltDP=57,1,19;AS_QD=35.41,3.68,25.98;BaseQRankSum=0.063;DP=123;ExcessHet=0.0000;FS=2.211;MQ=59.83;MQRankSum=0;QD=32.11;ReadPosRankSum=-0.562;SOR=0.740;VarDP=95 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,24,1,19:44:99:.:.:1786,0,1716,212:.:0,0,28,16 0|1:18,33,0,0:51:99:1|0:2599489_CA_C:1264,0,647,1318,746,2064,1318,746,2064,2064:2599489:8,10,14,19 +chrX 2600037 . C T 3991 . AC=3;AF=1.00;AN=3;AS_AltDP=121;AS_QD=33.23;DP=124;ExcessHet=0.0000;FS=0.000;MQ=59.92;QD=33.23;SOR=0.888;VarDP=121 GT:AD:DP:GQ:PL:SB 1:0,57:57:99:1886,0:0,0,30,27 1/1:0,64:64:99:2135,192,0:0,0,25,39 +chrX 2600368 . T TA 227.97 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=4.77;BaseQRankSum=1.062;DP=132;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=4.77;ReadPosRankSum=-0.583;SOR=0.741;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 1:23,33:56:99:.:267,0:13,10,19,14 0/0:.:63:97:63:0,97,1355 +chrX 2601933 . G A 308 . AC=1;AF=0.333;AN=3;AS_AltDP=39;AS_QD=4.90;BaseQRankSum=0.829;DP=135;ExcessHet=0.0000;FS=7.767;MQ=59.93;MQRankSum=1.169;QD=4.90;ReadPosRankSum=1.938;SOR=1.735;VarDP=69 GT:AD:DP:GQ:MIN_DP:PL:SB 1:30,39:69:99:.:338,0:10,20,7,32 0/0:.:63:97:63:0,97,1355 +chrX 2602613 . G T 1509 . AC=2;AF=0.667;AN=3;AS_AltDP=46;AS_QD=33.46;DP=118;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.46;SOR=0.780;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:70:99:70:0,238 1/1:0,46:46:99:.:1539,138,0:0,0,22,24 +chrX 2603872 . G T 3300 . AC=3;AF=1.00;AN=3;AS_AltDP=103;AS_QD=31.42;BaseQRankSum=4.032;DP=112;ExcessHet=0.0000;FS=10.474;MQ=59.73;MQRankSum=-0.289;QD=31.42;ReadPosRankSum=1.624;SOR=0.535;VarDP=106 GT:AD:DP:GQ:PL:SB 1:3,51:54:99:1633,0:0,3,28,23 1/1:0,52:52:99:1697,156,0:0,0,30,22 +chrX 2603977 . G GA,GAA 1908.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=70,22;AS_QD=27.81,34.41;DP=111;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=21.17;SOR=0.737;VarDP=92 GT:AD:DP:GQ:PL:SB 2:0,21,22:43:1:757,1,0:0,0,21,22 1/1:0,49,0:49:99:1191,147,0,1191,147,1191:0,0,24,25 +chrX 2604098 . G T 133 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=3.08;BaseQRankSum=0.88;DP=117;ExcessHet=0.0000;FS=1.047;MQ=60.00;MQRankSum=0;QD=3.08;ReadPosRankSum=0.304;SOR=0.906;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 1:24,29:53:99:.:163,0:12,12,13,16 0/0:.:63:56:63:0,56,1574 +chrX 2604811 . C T 938 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=14.03;BaseQRankSum=-0.053;DP=132;ExcessHet=0.0000;FS=8.229;MQ=60.00;MQRankSum=0;QD=14.03;ReadPosRankSum=0.596;SOR=0.939;VarDP=69 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,1509 0/1:32,37:69:99:.:968,0,800:13,19,22,15 +chrX 2605072 . T C 4370 . AC=3;AF=1.00;AN=3;AS_AltDP=135;AS_QD=32.59;DP=141;ExcessHet=0.0000;FS=0.000;MQ=59.97;QD=32.59;SOR=0.738;VarDP=135 GT:AD:DP:GQ:PL:SB 1:0,71:71:99:2323,0:0,0,33,38 1/1:0,64:64:99:2077,192,0:0,0,33,31 +chrX 2605162 . G A 2143 . AC=3;AF=1.00;AN=3;AS_AltDP=94;AS_QD=17.96;BaseQRankSum=-0.357;DP=128;ExcessHet=0.0000;FS=0.000;MQ=59.96;MQRankSum=0;QD=17.96;ReadPosRankSum=-0.643;SOR=0.627;VarDP=121 GT:AD:DP:GQ:PL:SB 1:26,39:65:99:391,0:13,13,20,19 1/1:1,55:56:99:1782,133,0:0,1,27,28 +chrX 2605310 . A AAAAC 296.97 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=6.46;BaseQRankSum=-0.528;DP=130;ExcessHet=0.0000;FS=1.050;MQ=60.00;MQRankSum=0;QD=6.46;ReadPosRankSum=0.139;SOR=0.540;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 1:22,30:52:99:.:336,0:10,12,15,15 0/0:.:59:99:59:0,102,1371 +chrX 2606063 . C CT,CTT 205.97 . AC=1,0;AF=0.333,0.00;AN=3;AS_AltDP=9,4;AS_QD=8.75,6.30;BaseQRankSum=-1.058;DP=114;ExcessHet=0.0000;FS=0.000;MQ=59.66;MQRankSum=-1.145;QD=7.66;ReadPosRankSum=-0.787;SOR=0.732;VarDP=32 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,1488,1488 0/1:19,9,4:32:99:.:245,0,357,100,350,645:9,10,6,7 +chrX 2606066 . T C 286 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=7.02;BaseQRankSum=-0.494;DP=104;ExcessHet=0.0000;FS=4.649;MQ=59.90;MQRankSum=0;QD=7.02;ReadPosRankSum=0.087;SOR=0.260;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 1:18,27:45:99:.:316,0:5,10,12,12 0/0:.:55:99:55:0,111,1665 +chrX 2607048 . T TCCAC 1483.97 . AC=3;AF=1.00;AN=3;AS_AltDP=35;AS_QD=32.02;DP=68;ExcessHet=0.0000;FS=0.000;MQ=59.67;QD=43.51;SOR=5.728;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,14:14:99:609,0:0,0,0,14 1/1:0,21:21:63:914,63,0:0,0,1,20 +chrX 2607827 . T C 3633 . AC=3;AF=1.00;AN=3;AS_AltDP=120;AS_QD=30.53;DP=126;ExcessHet=0.0000;FS=0.000;MQ=59.96;QD=30.53;SOR=0.871;VarDP=120 GT:AD:DP:GQ:PL:SB 1:0,65:65:99:1958,0:0,0,27,38 1/1:0,55:55:99:1705,164,0:0,0,28,27 +chrX 2608773 . A C 253 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=4.80;BaseQRankSum=-0.31;DP=128;ExcessHet=0.0000;FS=2.256;MQ=60.00;MQRankSum=0;QD=4.80;ReadPosRankSum=-0.691;SOR=1.141;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 1:25,34:59:99:.:283,0:12,13,13,21 0/0:.:65:85:65:0,85,1473 +chrX 2609048 . T G 3484 . AC=3;AF=1.00;AN=3;AS_AltDP=106;AS_QD=33.15;DP=109;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.15;SOR=0.853;VarDP=106 GT:AD:DP:GQ:PL:SB 1:0,50:50:99:1668,0:0,0,23,27 1/1:0,56:56:99:1846,168,0:0,0,26,30 +chrX 2609408 . GGCGCGCCGTGGC G 4570.97 . AC=2;AF=0.667;AN=3;AS_AltDP=108;AS_QD=31.58;BaseQRankSum=0.686;DP=163;ExcessHet=0.0000;FS=2.436;MQ=60.00;MQRankSum=0;QD=31.58;ReadPosRankSum=0.749;SOR=0.981;VarDP=146 GT:AD:DP:GQ:PL:SB 1:0,72:72:99:3222,0:0,0,42,30 0/1:38,36:74:99:1388,0,1481:19,19,19,17 +chrX 2609836 . T G 901 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=11.94;BaseQRankSum=-0.819;DP=117;ExcessHet=0.0000;FS=3.037;MQ=60.00;MQRankSum=0;QD=11.94;ReadPosRankSum=-1.952;SOR=1.077;VarDP=78 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:52:36:39:0,36 0/1:41,37:78:99:.:931,0,1105:19,22,14,23 +chrX 2610313 . TTCCTCTCTCTCTCCTC T 579.97 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=15.87;BaseQRankSum=-0.051;DP=84;ExcessHet=0.0000;FS=2.814;MQ=60.00;MQRankSum=0;QD=15.87;ReadPosRankSum=0.116;SOR=0.958;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:52:36:39:0,36 0/1:22,17:39:99:.:619,0,848:10,12,10,7 +chrX 2610357 . CTCTCTCTCT C 497.97 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=15.34;BaseQRankSum=-0.726;DP=80;ExcessHet=0.0000;FS=13.359;MQ=60.00;MQRankSum=0;QD=15.34;ReadPosRankSum=0.181;SOR=2.421;VarDP=35 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:52:36:39:0,36 0/1:20,15:35:99:.:537,0,763:11,9,3,12 +chrX 2610476 . T C,TTTCTCTCTCTCCCCCTC 131 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=0,4;AS_QD=0.00,17.89;BaseQRankSum=-0.967;DP=75;ExcessHet=0.0000;FS=3.522;MQ=60.00;MQRankSum=0;QD=17.89;ReadPosRankSum=0.464;SOR=2.712;VarDP=9 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:52:36:39:0,36,36 0/2:5,0,4:9:99:.:161,162,804,0,220,725:2,3,0,4 +chrX 2610549 . C CCT 1787.97 . AC=3;AF=1.00;AN=3;AS_AltDP=46;AS_QD=28.39;DP=51;ExcessHet=0.0000;FS=0.000;MQ=59.25;QD=39.72;SOR=1.765;VarDP=46 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:966,0:0,0,9,15 1/1:0,22:22:66:861,66,0:0,0,5,17 +chrX 2611203 . A AT 403.97 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=15.28;BaseQRankSum=0.279;DP=89;ExcessHet=0.0000;FS=0.000;MQ=59.55;MQRankSum=-0.653;QD=15.28;ReadPosRankSum=0.734;SOR=0.853;VarDP=29 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:52:99:52:0,315 0/1:10,19:29:99:.:443,0,195:6,4,12,7 +chrX 2611236 . TG T,TGG 652.97 . AC=2,0;AF=0.667,0.00;AN=3;AS_AltDP=40,0;AS_QD=12.36,0.00;BaseQRankSum=0.909;DP=62;ExcessHet=0.0000;FS=0.000;MQ=59.16;MQRankSum=1.769;QD=12.36;ReadPosRankSum=1.224;SOR=0.693;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:8,23,0:31:99:.:.:297,0,871:.:5,3,17,6 0|1:8,17,0:25:99:0|1:2611236_TG_T:395,0,207,419,257,676:2611236:6,2,10,7 +chrX 2611239 . TTTTTTTG T 634.97 . AC=2;AF=0.667;AN=3;AS_AltDP=40;AS_QD=12.04;BaseQRankSum=1.032;DP=65;ExcessHet=0.0000;FS=0.000;MQ=59.20;MQRankSum=1.769;QD=12.04;ReadPosRankSum=1.113;SOR=0.693;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:8,23:31:99:.:.:278,0:.:5,3,17,6 0|1:8,17:25:99:0|1:2611236_TG_T:396,0,207:2611236:6,2,10,7 +chrX 2611246 . G *,T 868 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=17,5;AS_QD=0.00,27.81;DP=63;ExcessHet=0.0000;FS=1.542;MQ=58.68;QD=40.82;SOR=1.106;VarDP=22 GT:AD:DP:GQ:PL:SB 1:8,23,0:31:99:278,0,638:5,3,17,6 1/2:0,17,5:22:99:898,149,147,465,0,402:0,0,14,8 +chrX 2611361 . T C 3863 . AC=3;AF=1.00;AN=3;AS_AltDP=124;AS_QD=31.40;DP=127;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.40;SOR=0.793;VarDP=124 GT:AD:DP:GQ:PL:SB 1:0,55:55:99:1726,0:0,0,28,27 1/1:0,69:69:99:2167,206,0:0,0,31,38 +chrX 2612105 . G A 595 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=11.79;BaseQRankSum=0.898;DP=120;ExcessHet=0.0000;FS=1.079;MQ=60.00;MQRankSum=0;QD=11.79;ReadPosRankSum=0.706;SOR=1.007;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,207 0/1:29,24:53:99:.:625,0,744:16,13,15,9 +chrX 2612327 . A G 848 . AC=2;AF=0.667;AN=3;AS_AltDP=71;AS_QD=6.32;BaseQRankSum=-1.387;DP=142;ExcessHet=0.0000;FS=3.018;MQ=60.00;MQRankSum=0;QD=6.32;ReadPosRankSum=0.739;SOR=0.859;VarDP=139 GT:AD:DP:GQ:PL:SB 1:35,43:78:99:153,0:18,17,28,15 0/1:33,28:61:99:725,0,929:15,18,11,17 +chrX 2612888 . G C 3409 . AC=3;AF=1.00;AN=3;AS_AltDP=106;AS_QD=32.44;DP=110;ExcessHet=0.0000;FS=0.000;MQ=59.94;QD=32.44;SOR=1.036;VarDP=106 GT:AD:DP:GQ:PL:SB 1:0,60:60:99:1900,0:0,0,22,38 1/1:0,46:46:99:1539,138,0:0,0,23,23 +chrX 2613604 . C G 798 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=14.28;BaseQRankSum=-0.752;DP=124;ExcessHet=0.0000;FS=2.296;MQ=60.00;MQRankSum=0;QD=14.28;ReadPosRankSum=-1.51;SOR=1.141;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,684 0/1:28,30:58:99:.:828,0,779:12,16,10,20 +chrX 2614564 . GA G 211.97 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=6.44;BaseQRankSum=1.141;DP=117;ExcessHet=0.0000;FS=13.142;MQ=60.00;MQRankSum=0;QD=6.44;ReadPosRankSum=-1.191;SOR=2.425;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,684 0/1:24,15:39:99:.:251,0,484:11,13,12,3 +chrX 2614730 . C T 932 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=8.22;BaseQRankSum=2.195;DP=119;ExcessHet=0.0000;FS=0.686;MQ=60.00;MQRankSum=0;QD=8.22;ReadPosRankSum=0.136;SOR=0.796;VarDP=117 GT:AD:DP:GQ:PL:SB 1:27,33:60:99:284,0:12,15,18,15 0/1:31,26:57:99:678,0,796:18,13,14,12 +chrX 2614902 . G A 862 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=13.12;BaseQRankSum=-0.668;DP=132;ExcessHet=0.0000;FS=2.030;MQ=60.00;MQRankSum=0;QD=13.12;ReadPosRankSum=-0.497;SOR=0.412;VarDP=68 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:99:60:0,1369 0/1:34,34:68:99:.:892,0,927:14,20,17,17 +chrX 2615057 . A G 821 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=14.93;BaseQRankSum=2.555;DP=117;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.93;ReadPosRankSum=-1.903;SOR=0.751;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:99:60:0,1369 0/1:27,30:57:99:.:851,0,662:14,13,16,14 +chrX 2615410 . A C 3424 . AC=3;AF=1.00;AN=3;AS_AltDP=105;AS_QD=32.90;DP=107;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.90;SOR=0.791;VarDP=105 GT:AD:DP:GQ:PL:SB 1:0,47:47:99:1534,0:0,0,24,23 1/1:0,58:58:99:1920,174,0:0,0,31,27 +chrX 2615601 . C T 569 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=11.75;BaseQRankSum=0.796;DP=103;ExcessHet=0.0000;FS=2.418;MQ=60.00;MQRankSum=0;QD=11.75;ReadPosRankSum=-2.036;SOR=1.043;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:51:99:51:0,1351 0/1:29,22:51:99:.:599,0,808:15,14,9,13 +chrX 2615663 . C T 3384 . AC=3;AF=1.00;AN=3;AS_AltDP=105;AS_QD=32.51;DP=106;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.51;SOR=0.751;VarDP=105 GT:AD:DP:GQ:PL:SB 1:0,61:61:99:1955,0:0,0,27,34 1/1:0,44:44:99:1459,132,0:0,0,24,20 +chrX 2615840 . C G 741 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=13.77;BaseQRankSum=0.61;DP=118;ExcessHet=0.0000;FS=7.460;MQ=60.00;MQRankSum=0;QD=13.77;ReadPosRankSum=1.693;SOR=0.202;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:99:60:0,1396 0/1:26,30:56:99:.:771,0,587:18,8,15,15 +chrX 2616361 . G A 4425 . AC=3;AF=1.00;AN=3;AS_AltDP=137;AS_QD=32.28;BaseQRankSum=2.334;DP=143;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=32.28;ReadPosRankSum=-1.21;SOR=0.459;VarDP=138 GT:AD:DP:GQ:PL:SB 1:0,75:75:99:2461,0:0,0,31,44 1/1:1,62:63:99:1994,179,0:0,1,23,39 +chrX 2616558 . ATGTG A 962.97 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=24.44;BaseQRankSum=0.611;DP=104;ExcessHet=0.0000;FS=4.533;MQ=60.00;MQRankSum=0;QD=24.44;ReadPosRankSum=-0.695;SOR=1.014;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,296 0/1:16,25:41:99:.:1002,0,596:7,9,15,10 +chrX 2616799 . T A 618 . AC=2;AF=0.667;AN=3;AS_AltDP=45;AS_QD=7.36;BaseQRankSum=0.601;DP=93;ExcessHet=0.0000;FS=4.047;MQ=60.00;MQRankSum=0;QD=7.36;ReadPosRankSum=0.585;SOR=0.776;VarDP=88 GT:AD:DP:GQ:PL:SB 1:21,25:46:99:134,0:13,8,11,14 0/1:22,20:42:99:514,0,619:6,16,14,6 +chrX 2617404 . G A 4028 . AC=3;AF=1.00;AN=3;AS_AltDP=123;AS_QD=32.99;DP=129;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.99;SOR=0.963;VarDP=123 GT:AD:DP:GQ:PL:SB 1:0,59:59:99:1984,0:0,0,26,33 1/1:0,64:64:99:2074,192,0:0,0,28,36 +chrX 2617486 . A C 1883 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=30.37;DP=134;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.37;SOR=0.859;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:70:99:70:0,278 1/1:0,63:63:99:.:1913,187,0:0,0,29,34 +chrX 2617563 . A G 2241 . AC=3;AF=1.00;AN=3;AS_AltDP=100;AS_QD=17.34;BaseQRankSum=1.125;DP=137;ExcessHet=0.0000;FS=1.664;MQ=60.00;MQRankSum=0;QD=17.34;ReadPosRankSum=0.406;SOR=0.574;VarDP=131 GT:AD:DP:GQ:PL:SB 1:31,40:71:99:332,0:17,14,23,17 1/1:0,60:60:99:1939,179,0:0,0,26,34 +chrX 2617679 . CT C 59.97 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=1.48;BaseQRankSum=0.355;DP=133;ExcessHet=0.0000;FS=6.612;MQ=60.00;MQRankSum=0;QD=1.48;ReadPosRankSum=0.784;SOR=0.345;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 1:32,35:67:99:.:99,0:11,21,18,17 0/0:.:63:99:63:0,114,1438 +chrX 2618136 . C G 4266 . AC=3;AF=1.00;AN=3;AS_AltDP=134;AS_QD=32.06;DP=138;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.06;SOR=1.153;VarDP=134 GT:AD:DP:GQ:PL:SB 1:0,80:80:99:2580,0:0,0,37,43 1/1:0,54:54:99:1716,161,0:0,0,17,37 +chrX 2618502 . TC T 894.97 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=16.10;BaseQRankSum=-0.85;DP=139;ExcessHet=0.0000;FS=9.496;MQ=60.00;MQRankSum=0;QD=16.10;ReadPosRankSum=-0.641;SOR=1.019;VarDP=58 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:78:99:78:.:.:0,1800 0|1:32,26:58:99:.:0|1:2618502_TC_T:934,0,1179:2618502:20,12,10,16 +chrX 2618506 . TC T 894.97 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=16.10;BaseQRankSum=-1.518;DP=139;ExcessHet=0.0000;FS=9.496;MQ=60.00;MQRankSum=0;QD=16.10;ReadPosRankSum=-0.43;SOR=1.019;VarDP=58 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:78:99:78:.:.:0,1800 0|1:32,26:58:99:.:0|1:2618502_TC_T:934,0,1179:2618502:20,12,10,16 +chrX 2618572 . C T 3594 . AC=3;AF=1.00;AN=3;AS_AltDP=120;AS_QD=29.70;BaseQRankSum=0.962;DP=128;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=29.70;ReadPosRankSum=0.017;SOR=0.796;VarDP=122 GT:AD:DP:GQ:PL:SB 1:2,70:72:99:2087,0:1,1,30,40 1/1:0,50:50:99:1537,149,0:0,0,27,23 +chrX 2618896 . A T 901 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=15.52;BaseQRankSum=-0.118;DP=128;ExcessHet=0.0000;FS=0.989;MQ=60.00;MQRankSum=0;QD=15.52;ReadPosRankSum=0.537;SOR=0.532;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,1683 0/1:26,34:60:99:.:931,0,673:15,11,18,16 +chrX 2619607 . T C 2106 . AC=3;AF=1.00;AN=3;AS_AltDP=95;AS_QD=17.37;BaseQRankSum=-0.584;DP=124;ExcessHet=0.0000;FS=1.784;MQ=60.00;MQRankSum=0;QD=17.37;ReadPosRankSum=-0.761;SOR=0.991;VarDP=123 GT:AD:DP:GQ:PL:SB 1:28,35:63:99:208,0:13,15,14,21 1/1:0,60:60:99:1928,180,0:0,0,24,36 +chrX 2620094 . TTTA T 4378.97 . AC=3;AF=1.00;AN=3;AS_AltDP=100;AS_QD=34.81;BaseQRankSum=-0.381;DP=126;ExcessHet=0.0000;FS=3.416;MQ=60.00;MQRankSum=0;QD=43.74;ReadPosRankSum=1.005;SOR=0.549;VarDP=101 GT:AD:DP:GQ:PL:SB 1:1,49:50:99:2122,0:0,1,28,21 1/1:0,51:51:99:2296,154,0:0,0,27,24 +chrX 2621124 . C G 569 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=9.66;BaseQRankSum=-0.931;DP=124;ExcessHet=0.0000;FS=0.983;MQ=60.00;MQRankSum=0;QD=9.66;ReadPosRankSum=-2.012;SOR=0.504;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:99:60:0,1419 0/1:36,26:62:99:.:599,0,951:20,16,13,13 +chrX 2621388 . T TTATCTC 5074.97 . AC=3;AF=1.00;AN=3;AS_AltDP=116;AS_QD=28.71;DP=127;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.09;SOR=1.003;VarDP=116 GT:AD:DP:GQ:PL:SB 1:0,67:67:99:2966,0:0,0,38,29 1/1:0,49:49:99:2148,147,0:0,0,28,21 +chrX 2621843 . T G 204 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=4.25;BaseQRankSum=0.51;DP=117;ExcessHet=0.0000;FS=7.350;MQ=60.00;MQRankSum=0;QD=4.25;ReadPosRankSum=-0.671;SOR=1.334;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 1:24,31:55:99:.:234,0:11,13,20,11 0/0:.:61:38:59:0,38,1261 +chrX 2622171 . CA C,CAA 912.97 . AC=1,2;AF=0.333,0.667;AN=3;AS_AltDP=38,31;AS_QD=15.97,13.88;BaseQRankSum=-0.634;DP=108;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.60;ReadPosRankSum=0.674;SOR=0.316;VarDP=70 GT:AD:DP:GQ:PL:SB 2:1,17,18:36:26:230,26,0:0,1,18,17 1/2:0,21,13:34:99:722,303,401,508,0,623:0,0,13,21 +chrX 2622225 . A T 930 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=16.84;BaseQRankSum=-1.892;DP=126;ExcessHet=0.0000;FS=3.724;MQ=60.00;MQRankSum=0;QD=16.84;ReadPosRankSum=-1.017;SOR=0.779;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:69:99:69:0,333 0/1:23,34:57:99:.:960,0,628:10,13,19,15 +chrX 2622631 . C T 3784 . AC=3;AF=1.00;AN=3;AS_AltDP=116;AS_QD=32.88;DP=117;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.88;SOR=0.877;VarDP=116 GT:AD:DP:GQ:PL:SB 1:0,66:66:99:2202,0:0,0,39,27 1/1:0,50:50:99:1612,149,0:0,0,24,26 +chrX 2622826 . T A 769 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=11.75;BaseQRankSum=1.38;DP=147;ExcessHet=0.0000;FS=2.037;MQ=60.00;MQRankSum=0;QD=11.75;ReadPosRankSum=0.093;SOR=0.670;VarDP=68 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:77:99:77:0,1800 0/1:38,30:68:99:.:799,0,986:17,21,16,14 +chrX 2622827 . A C 4927 . AC=3;AF=1.00;AN=3;AS_AltDP=142;AS_QD=34.91;DP=145;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=34.91;SOR=0.874;VarDP=142 GT:AD:DP:GQ:PL:SB 1:0,74:74:99:2416,0:0,0,32,42 1/1:0,68:68:99:2541,204,0:0,0,33,35 +chrX 2622902 . G A 1018 . AC=1;AF=0.333;AN=3;AS_AltDP=40;AS_QD=15.19;BaseQRankSum=-0.652;DP=127;ExcessHet=0.0000;FS=4.870;MQ=60.00;MQRankSum=0;QD=15.19;ReadPosRankSum=-0.809;SOR=1.258;VarDP=69 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:58:99:58:0,1543 0/1:29,40:69:99:.:1048,0,751:14,15,25,15 +chrX 2622962 . T C 3744 . AC=3;AF=1.00;AN=3;AS_AltDP=121;AS_QD=31.19;DP=124;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.19;SOR=0.710;VarDP=121 GT:AD:DP:GQ:PL:SB 1:0,51:51:99:1632,0:0,0,28,23 1/1:0,70:70:99:2142,209,0:0,0,33,37 +chrX 2623692 . GA G 5828.97 . AC=3;AF=1.00;AN=3;AS_AltDP=133;AS_QD=35.30;DP=137;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.12;SOR=1.055;VarDP=133 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,62:62:99:.:.:2704,0:.:0,0,37,25 1|1:0,71:71:99:0|1:2623692_GA_G:3164,214,0:2623692:0,0,40,31 +chrX 2623694 . T C 5838 . AC=3;AF=1.00;AN=3;AS_AltDP=133;AS_QD=36.61;DP=136;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.12;SOR=1.055;VarDP=133 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,62:62:99:.:.:2704,0:.:0,0,37,25 1|1:0,71:71:99:0|1:2623692_GA_G:3164,214,0:2623692:0,0,40,31 +chrX 2624181 . T C 633 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=11.63;BaseQRankSum=-0.628;DP=122;ExcessHet=0.0000;FS=2.243;MQ=60.00;MQRankSum=0;QD=11.63;ReadPosRankSum=-1.943;SOR=1.101;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,406 0/1:30,27:57:99:.:663,0,808:15,15,16,11 +chrX 2624371 . TA T 606.97 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=11.75;BaseQRankSum=1.754;DP=128;ExcessHet=0.0000;FS=5.871;MQ=59.91;MQRankSum=0;QD=11.75;ReadPosRankSum=0.497;SOR=0.235;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,406 0/1:28,27:55:99:.:646,0,644:7,21,11,16 +chrX 2624425 . CTT CT,C 2092.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=57,26;AS_QD=26.30,28.17;BaseQRankSum=0.117;DP=122;ExcessHet=0.0000;FS=0.000;MQ=59.75;MQRankSum=-0.247;QD=24.51;ReadPosRankSum=-1.78;SOR=0.717;VarDP=87 GT:AD:DP:GQ:PL:SB 1:4,37,0:41:99:846,0,928:2,2,18,19 1/2:0,20,26:46:99:1286,655,528,441,0,476:0,0,23,23 +chrX 2624973 . C CT 378.97 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=9.72;BaseQRankSum=0.033;DP=127;ExcessHet=0.0000;FS=9.057;MQ=59.75;MQRankSum=-0.801;QD=9.72;ReadPosRankSum=0.554;SOR=0.878;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:99:60:0,1151 0/1:18,25:43:99:.:418,0,311:6,12,15,10 +chrX 2625189 . C T 3757 . AC=3;AF=1.00;AN=3;AS_AltDP=111;AS_QD=34.12;DP=116;ExcessHet=0.0000;FS=0.000;MQ=59.88;QD=34.12;SOR=0.907;VarDP=111 GT:AD:DP:GQ:PL:SB 1:0,58:58:99:1966,0:0,0,32,26 1/1:0,53:53:99:1821,159,0:0,0,29,24 +chrX 2625370 . T C 1154 . AC=2;AF=0.667;AN=3;AS_AltDP=73;AS_QD=8.90;BaseQRankSum=0.198;DP=142;ExcessHet=0.0000;FS=3.164;MQ=59.97;MQRankSum=1.11;QD=8.90;ReadPosRankSum=0.148;SOR=1.007;VarDP=133 GT:AD:DP:GQ:PL:SB 1:26,30:56:97:97,0:14,12,10,20 0/1:34,43:77:99:1087,0,869:14,20,19,24 +chrX 2625507 . A AT 3828.97 . AC=3;AF=1.00;AN=3;AS_AltDP=124;AS_QD=31.19;DP=135;ExcessHet=0.0000;FS=0.000;MQ=59.98;QD=31.19;SOR=0.941;VarDP=124 GT:AD:DP:GQ:PL:SB 1:0,57:57:99:1758,0:0,0,38,19 1/1:0,67:67:99:2110,201,0:0,0,31,36 +chrX 2625747 . C T 3841 . AC=3;AF=1.00;AN=3;AS_AltDP=116;AS_QD=33.37;DP=120;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.37;SOR=0.763;VarDP=116 GT:AD:DP:GQ:PL:SB 1:0,61:61:99:2031,0:0,0,31,30 1/1:0,55:55:99:1840,165,0:0,0,25,30 +chrX 2625855 . T TTATATA 5204.97 . AC=3;AF=1.00;AN=3;AS_AltDP=119;AS_QD=30.94;DP=134;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.07;SOR=0.973;VarDP=119 GT:AD:DP:GQ:PL:SB 1:0,71:71:99:3120,0:0,0,41,30 1/1:0,48:48:99:2124,144,0:0,0,26,22 +chrX 2625911 . C T 3798 . AC=3;AF=1.00;AN=3;AS_AltDP=114;AS_QD=33.29;BaseQRankSum=-0.227;DP=117;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=33.29;ReadPosRankSum=0.828;SOR=0.268;VarDP=115 GT:AD:DP:GQ:PL:SB 1:1,66:67:99:2194,0:1,0,34,32 1/1:0,48:48:99:1634,144,0:0,0,26,22 +chrX 2626205 . C T 599 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=5.57;BaseQRankSum=-0.091;DP=118;ExcessHet=0.0000;FS=0.699;MQ=60.00;MQRankSum=0;QD=5.57;ReadPosRankSum=0.953;SOR=0.737;VarDP=113 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:31,34:65:99:.:.:109,0:.:14,17,16,18 0|1:28,20:48:99:0|1:2626205_C_T:520,0,1064:2626205:15,13,12,8 +chrX 2626227 . G T 772 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=17.06;BaseQRankSum=-0.628;DP=118;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=17.06;ReadPosRankSum=-0.282;SOR=0.674;VarDP=47 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:70:99:70:.:.:0,1800 0|1:19,28:47:99:.:1|0:2626205_C_T:802,0,693:2626205:11,8,16,12 +chrX 2626917 . G A 4104 . AC=3;AF=1.00;AN=3;AS_AltDP=125;AS_QD=33.07;DP=129;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.07;SOR=0.810;VarDP=125 GT:AD:DP:GQ:PL:SB 1:0,74:74:99:2512,0:0,0,35,39 1/1:0,51:51:99:1622,153,0:0,0,24,27 +chrX 2627131 . C T 562 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=12.87;BaseQRankSum=1.649;DP=104;ExcessHet=0.0000;FS=5.972;MQ=60.00;MQRankSum=0;QD=12.87;ReadPosRankSum=0.21;SOR=1.118;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:57:64:57:0,64 0/1:25,21:46:99:.:592,0,686:11,14,13,8 +chrX 2627164 . GT G 809.97 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=16.02;BaseQRankSum=-0.012;DP=113;ExcessHet=0.0000;FS=3.855;MQ=60.00;MQRankSum=0;QD=16.02;ReadPosRankSum=0.398;SOR=0.800;VarDP=53 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:57:64:57:.:.:0,64 0|1:30,23:53:99:.:0|1:2627164_GT_G:849,0,1165:2627164:13,17,13,10 +chrX 2627167 . G C 819 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=16.02;BaseQRankSum=0.451;DP=114;ExcessHet=0.0000;FS=3.855;MQ=60.00;MQRankSum=0;QD=16.02;ReadPosRankSum=0.26;SOR=0.800;VarDP=53 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:57:64:57:.:.:0,64 0|1:30,23:53:99:.:0|1:2627164_GT_G:849,0,1165:2627164:13,17,13,10 +chrX 2627299 . GA G 620.97 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=10.48;BaseQRankSum=-1.156;DP=124;ExcessHet=0.0000;FS=19.956;MQ=60.00;MQRankSum=0;QD=10.48;ReadPosRankSum=-0.475;SOR=0.316;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:57:64:57:0,64 0/1:33,30:63:99:.:660,0,737:26,7,14,16 +chrX 2628107 . C G 1132 . AC=1;AF=0.333;AN=3;AS_AltDP=42;AS_QD=16.37;BaseQRankSum=-0.766;DP=129;ExcessHet=0.0000;FS=0.922;MQ=60.00;MQRankSum=0;QD=16.37;ReadPosRankSum=1.627;SOR=0.925;VarDP=71 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:57:64:57:0,64 0/1:29,42:71:99:.:1162,0,763:14,15,18,24 +chrX 2628264 . T G 877 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=16.49;BaseQRankSum=1.968;DP=112;ExcessHet=0.0000;FS=2.310;MQ=60.00;MQRankSum=0;QD=16.49;ReadPosRankSum=-0.154;SOR=0.633;VarDP=55 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:57:64:57:.:.:0,64 0|1:23,32:55:99:.:0|1:2628264_T_G:907,0,554:2628264:10,13,17,15 +chrX 2628280 . A G 4093 . AC=3;AF=1.00;AN=3;AS_AltDP=110;AS_QD=30.48;DP=117;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=37.48;SOR=0.767;VarDP=110 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,57:57:99:.:.:2035,0:.:0,0,27,30 1|1:0,53:53:99:0|1:2628264_T_G:2088,159,0:2628264:0,0,26,27 +chrX 2630042 . A G 3412 . AC=3;AF=1.00;AN=3;AS_AltDP=119;AS_QD=28.45;BaseQRankSum=-0.757;DP=123;ExcessHet=0.0000;FS=6.427;MQ=59.29;MQRankSum=4.561;QD=28.45;ReadPosRankSum=-0.073;SOR=0.316;VarDP=121 GT:AD:DP:GQ:PL:SB 1:0,70:70:99:2020,0:0,0,44,26 1/1:2,49:51:63:1422,63,0:0,2,19,30 +chrX 2630313 . G C 334 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=5.43;BaseQRankSum=-0.161;DP=129;ExcessHet=0.0000;FS=32.719;MQ=46.76;MQRankSum=-0.152;QD=5.43;ReadPosRankSum=2.324;SOR=3.753;VarDP=67 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:99:62:.:.:0,332 0|1:54,13:67:99:.:0|1:2630313_G_C:364,0,1837:2630313:33,21,1,12 +chrX 2630332 . T G 347 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=6.98;BaseQRankSum=1.679;DP=116;ExcessHet=0.0000;FS=37.787;MQ=52.98;MQRankSum=-2.545;QD=6.98;ReadPosRankSum=0.695;SOR=5.133;VarDP=54 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:99:62:.:.:0,332 0|1:42,12:54:99:.:0|1:2630313_G_C:377,0,1726:2630313:25,17,0,12 +chrX 2630338 . A G 359 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=7.78;BaseQRankSum=1.879;DP=112;ExcessHet=0.0000;FS=39.921;MQ=52.68;MQRankSum=-2.348;QD=7.78;ReadPosRankSum=-0.523;SOR=5.132;VarDP=50 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:99:62:.:.:0,332 0|1:38,12:50:99:.:0|1:2630313_G_C:389,0,1558:2630313:24,14,0,12 +chrX 2630350 . G C 324 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=7.53;BaseQRankSum=0.588;DP=109;ExcessHet=0.0000;FS=35.281;MQ=51.74;MQRankSum=-2.232;QD=7.53;ReadPosRankSum=-1.993;SOR=4.973;VarDP=47 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:99:62:.:.:0,332 0|1:36,11:47:99:.:0|1:2630313_G_C:354,0,1477:2630313:22,14,0,11 +chrX 2630351 . G T 285 . AC=1;AF=0.333;AN=3;AS_AltDP=10;AS_QD=7.00;BaseQRankSum=0.803;DP=107;ExcessHet=0.0000;FS=31.395;MQ=51.40;MQRankSum=-2.326;QD=7.00;ReadPosRankSum=-2.076;SOR=4.800;VarDP=45 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:99:62:.:.:0,332 0|1:35,10:45:99:.:0|1:2630313_G_C:315,0,1440:2630313:21,14,0,10 +chrX 2630359 . A C 249 . AC=1;AF=0.333;AN=3;AS_AltDP=9;AS_QD=6.64;BaseQRankSum=1.335;DP=104;ExcessHet=0.0000;FS=26.904;MQ=50.80;MQRankSum=-2.388;QD=6.64;ReadPosRankSum=-2.74;SOR=4.611;VarDP=42 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:99:62:.:.:0,332 0|1:33,9:42:99:.:0|1:2630313_G_C:279,0,1359:2630313:19,14,0,9 +chrX 2630370 . A G 96 . AC=1;AF=0.333;AN=3;AS_AltDP=6;AS_QD=2.63;BaseQRankSum=1.094;DP=110;ExcessHet=0.0000;FS=16.588;MQ=52.01;MQRankSum=-3.578;QD=2.63;ReadPosRankSum=-2.625;SOR=3.904;VarDP=48 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:99:62:.:.:0,332 0|1:42,6:48:99:.:0|1:2630313_G_C:126,0,1705:2630313:24,18,0,6 +chrX 2630380 . G A 54 . AC=1;AF=0.333;AN=3;AS_AltDP=5;AS_QD=1.79;BaseQRankSum=0.907;DP=110;ExcessHet=0.0000;FS=16.588;MQ=52.38;MQRankSum=-3.327;QD=1.79;ReadPosRankSum=-2.36;SOR=3.599;VarDP=47 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:99:62:.:.:0,332 0|1:42,5:47:84:.:0|1:2630313_G_C:84,0,1677:2630313:24,18,0,5 +chrX 2630787 . ATAG A 922.97 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=18.86;BaseQRankSum=-2.067;DP=116;ExcessHet=0.0000;FS=1.101;MQ=56.86;MQRankSum=-1.008;QD=18.86;ReadPosRankSum=-0.829;SOR=0.503;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,332 0/1:26,25:51:99:.:962,0,1016:9,17,10,15 +chrX 2631522 . A G 814 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=16.55;BaseQRankSum=-0.459;DP=113;ExcessHet=0.0000;FS=8.273;MQ=52.36;MQRankSum=-1.68;QD=16.55;ReadPosRankSum=1.284;SOR=1.265;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,332 0/1:20,31:51:99:.:844,0,500:12,8,11,20 +chrX 2631750 . T C 71 . AC=1;AF=0.333;AN=3;AS_AltDP=6;AS_QD=1.80;BaseQRankSum=-3.651;DP=118;ExcessHet=0.0000;FS=7.151;MQ=54.89;MQRankSum=-3.402;QD=1.80;ReadPosRankSum=1.31;SOR=2.276;VarDP=56 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:99:62:.:.:0,332 0|1:50,6:56:99:.:0|1:2631750_T_C:101,0,2020:2631750:23,27,5,1 +chrX 2631754 . C A 74 . AC=1;AF=0.333;AN=3;AS_AltDP=6;AS_QD=1.89;BaseQRankSum=-0.462;DP=118;ExcessHet=0.0000;FS=7.151;MQ=54.91;MQRankSum=-3.416;QD=1.89;ReadPosRankSum=0.964;SOR=2.281;VarDP=55 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:99:62:.:.:0,332 0|1:49,6:55:99:.:0|1:2631750_T_C:104,0,1989:2631750:23,26,5,1 +chrX 2631897 . GCACTTCCTGGTTCATAGGGACATTGTAA G 1301.97 . AC=3;AF=1.00;AN=3;AS_AltDP=37;AS_QD=34.38;BaseQRankSum=-0.566;DP=64;ExcessHet=0.0000;FS=0.000;MQ=57.49;MQRankSum=-0.935;QD=34.38;ReadPosRankSum=0.575;SOR=0.859;VarDP=39 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,15:15:99:.:.:660,0:.:0,0,6,9 1|1:2,22:24:38:0|1:2631897_GCACTTCCTGGTTCATAGGGACATTGTAA_G:681,38,0:2631897:1,1,14,8 +chrX 2632177 . A G 607 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=13.55;BaseQRankSum=-0.584;DP=102;ExcessHet=0.0000;FS=0.000;MQ=57.56;MQRankSum=-1.489;QD=13.55;ReadPosRankSum=1.419;SOR=0.605;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:55:99:55:0,604 0/1:22,25:47:99:.:637,0,584:12,10,13,12 +chrX 2632236 . TTCC T 584.97 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=13.28;BaseQRankSum=1.372;DP=107;ExcessHet=0.0000;FS=1.159;MQ=56.46;MQRankSum=-4.91;QD=13.28;ReadPosRankSum=0.591;SOR=0.519;VarDP=47 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:55:99:55:.:.:0,604 0|1:30,17:47:99:.:0|1:2632236_TTCC_T:624,0,1208:2632236:11,19,7,10 +chrX 2632242 . T TGG 584.97 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=13.28;BaseQRankSum=0.974;DP=103;ExcessHet=0.0000;FS=1.159;MQ=56.15;MQRankSum=-4.91;QD=13.28;ReadPosRankSum=0.853;SOR=0.519;VarDP=47 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:55:99:55:.:.:0,604 0|1:30,17:47:99:.:0|1:2632236_TTCC_T:624,0,1209:2632236:11,19,7,10 +chrX 2632250 . C G 620 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=12.26;BaseQRankSum=-0.483;DP=109;ExcessHet=0.0000;FS=2.541;MQ=56.07;MQRankSum=-4.55;QD=12.26;ReadPosRankSum=0.808;SOR=1.250;VarDP=53 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:55:99:55:.:.:0,604 0|1:35,18:53:99:.:0|1:2632236_TTCC_T:650,0,1415:2632236:16,19,6,12 +chrX 2632261 . G A 560 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=10.17;BaseQRankSum=-0.521;DP=114;ExcessHet=0.0000;FS=5.852;MQ=56.41;MQRankSum=-5.093;QD=10.17;ReadPosRankSum=1.283;SOR=1.515;VarDP=58 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:55:99:55:.:.:0,604 0|1:41,17:58:99:.:0|1:2632236_TTCC_T:590,0,1670:2632236:19,22,5,12 +chrX 2632264 . C T 557 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=9.95;BaseQRankSum=0.012;DP=115;ExcessHet=0.0000;FS=4.184;MQ=56.24;MQRankSum=-4.858;QD=9.95;ReadPosRankSum=1.248;SOR=1.449;VarDP=59 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:55:99:55:.:.:0,604 0|1:42,17:59:99:.:0|1:2632236_TTCC_T:587,0,1710:2632236:19,23,5,12 +chrX 2632267 . C T 635 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=10.56;BaseQRankSum=1.028;DP=119;ExcessHet=0.0000;FS=3.916;MQ=56.48;MQRankSum=-4.649;QD=10.56;ReadPosRankSum=1.452;SOR=1.341;VarDP=63 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:55:99:55:.:.:0,604 0|1:44,19:63:99:.:0|1:2632236_TTCC_T:665,0,1788:2632236:20,24,6,13 +chrX 2632271 . A G 629 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=10.14;BaseQRankSum=1.322;DP=121;ExcessHet=0.0000;FS=5.551;MQ=56.59;MQRankSum=-4.76;QD=10.14;ReadPosRankSum=0.926;SOR=1.478;VarDP=65 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:55:99:55:.:.:0,604 0|1:46,19:65:99:.:0|1:2632236_TTCC_T:659,0,1860:2632236:22,24,6,13 +chrX 2632306 . C T 5479 . AC=3;AF=1.00;AN=3;AS_AltDP=160;AS_QD=34.22;BaseQRankSum=2.519;DP=165;ExcessHet=0.0000;FS=3.092;MQ=57.06;MQRankSum=-0.496;QD=34.22;ReadPosRankSum=-0.248;SOR=0.303;VarDP=161 GT:AD:DP:GQ:PL:SB 1:0,84:84:99:2767,0:0,0,39,45 1/1:1,76:77:99:2742,221,0:1,0,39,37 +chrX 2632315 . G T 576 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=7.21;BaseQRankSum=-1.279;DP=148;ExcessHet=0.0000;FS=0.945;MQ=57.02;MQRankSum=-3.559;QD=7.21;ReadPosRankSum=-1.099;SOR=0.824;VarDP=84 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:99:63:.:.:0,257 0|1:62,22:84:99:.:0|1:2632236_TTCC_T:606,0,2155:2632236:30,32,12,10 +chrX 2632363 . C T 893 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=11.26;BaseQRankSum=0.689;DP=146;ExcessHet=0.0000;FS=17.740;MQ=57.31;MQRankSum=-7.168;QD=11.26;ReadPosRankSum=3.425;SOR=1.920;VarDP=82 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:99:63:.:.:0,257 0|1:56,26:82:99:.:0|1:2632363_C_T:923,0,2273:2632363:32,24,7,19 +chrX 2632364 . A G 890 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=11.08;BaseQRankSum=0.436;DP=146;ExcessHet=0.0000;FS=19.914;MQ=57.31;MQRankSum=-7.222;QD=11.08;ReadPosRankSum=3.344;SOR=1.916;VarDP=83 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:99:63:.:.:0,257 0|1:57,26:83:99:.:0|1:2632363_C_T:920,0,2315:2632363:33,24,7,19 +chrX 2632383 . T C 887 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=10.92;BaseQRankSum=0.545;DP=147;ExcessHet=0.0000;FS=20.246;MQ=57.03;MQRankSum=-6.857;QD=10.92;ReadPosRankSum=2.102;SOR=1.911;VarDP=84 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:99:63:.:.:0,257 0|1:58,26:84:99:.:0|1:2632363_C_T:917,0,2357:2632363:34,24,7,19 +chrX 2632384 . G A 887 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=10.92;BaseQRankSum=1.533;DP=147;ExcessHet=0.0000;FS=20.246;MQ=57.03;MQRankSum=-6.857;QD=10.92;ReadPosRankSum=1.999;SOR=1.911;VarDP=84 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:99:63:.:.:0,257 0|1:58,26:84:99:.:0|1:2632363_C_T:917,0,2357:2632363:34,24,7,19 +chrX 2632402 . G A 803 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=10.16;BaseQRankSum=2.247;DP=145;ExcessHet=0.0000;FS=15.609;MQ=57.43;MQRankSum=-6.645;QD=10.16;ReadPosRankSum=-0.601;SOR=2.096;VarDP=82 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:99:63:.:.:0,257 0|1:58,24:82:99:.:0|1:2632363_C_T:833,0,2363:2632363:31,27,6,18 +chrX 2632404 . C T 812 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=10.66;BaseQRankSum=1.798;DP=142;ExcessHet=0.0000;FS=13.225;MQ=57.33;MQRankSum=-6.483;QD=10.66;ReadPosRankSum=-0.904;SOR=2.116;VarDP=79 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:99:63:.:.:0,257 0|1:55,24:79:99:.:0|1:2632363_C_T:842,0,2237:2632363:28,27,6,18 +chrX 2632420 . T C 650 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=9.32;BaseQRankSum=0.642;DP=136;ExcessHet=0.0000;FS=9.492;MQ=57.62;MQRankSum=-6.49;QD=9.32;ReadPosRankSum=-1.863;SOR=1.904;VarDP=73 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:99:63:.:.:0,257 0|1:53,20:73:99:.:0|1:2632363_C_T:680,0,2165:2632363:25,28,5,15 +chrX 2632439 . C T 188 . AC=1;AF=0.333;AN=3;AS_AltDP=9;AS_QD=3.52;BaseQRankSum=1.748;DP=125;ExcessHet=0.0000;FS=24.304;MQ=58.33;MQRankSum=-6.633;QD=3.52;ReadPosRankSum=-2.029;SOR=4.614;VarDP=62 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:99:63:.:.:0,257 0|1:53,9:62:99:.:0|1:2632363_C_T:218,0,2198:2632363:27,26,0,9 +chrX 2632441 . G A 188 . AC=1;AF=0.333;AN=3;AS_AltDP=9;AS_QD=3.52;BaseQRankSum=1.589;DP=125;ExcessHet=0.0000;FS=24.304;MQ=58.33;MQRankSum=-6.633;QD=3.52;ReadPosRankSum=-2.159;SOR=4.614;VarDP=62 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:99:63:.:.:0,257 0|1:53,9:62:99:.:0|1:2632363_C_T:218,0,2198:2632363:27,26,0,9 +chrX 2632446 . G T 146 . AC=1;AF=0.333;AN=3;AS_AltDP=8;AS_QD=2.89;BaseQRankSum=1.829;DP=124;ExcessHet=0.0000;FS=17.820;MQ=58.30;MQRankSum=-7.061;QD=2.89;ReadPosRankSum=-2.729;SOR=4.191;VarDP=61 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:99:63:.:.:0,257 0|1:53,8:61:99:.:0|1:2632363_C_T:176,0,2201:2632363:25,28,0,8 +chrX 2632447 . C T 149 . AC=1;AF=0.333;AN=3;AS_AltDP=8;AS_QD=2.98;BaseQRankSum=1.774;DP=123;ExcessHet=0.0000;FS=17.700;MQ=58.27;MQRankSum=-6.997;QD=2.98;ReadPosRankSum=-2.997;SOR=4.114;VarDP=60 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:99:63:.:.:0,257 0|1:52,8:60:99:.:0|1:2632363_C_T:179,0,2159:2632363:24,28,0,8 +chrX 2632453 . C T 161 . AC=1;AF=0.333;AN=3;AS_AltDP=8;AS_QD=3.41;BaseQRankSum=1.461;DP=119;ExcessHet=0.0000;FS=17.673;MQ=58.61;MQRankSum=-7.387;QD=3.41;ReadPosRankSum=-3.629;SOR=4.091;VarDP=56 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:99:63:.:.:0,257 0|1:48,8:56:99:.:0|1:2632363_C_T:191,0,1991:2632363:22,26,0,8 +chrX 2632455 . T TTGTGGAAG 145.97 . AC=1;AF=0.333;AN=3;AS_AltDP=8;AS_QD=3.19;BaseQRankSum=1.028;DP=121;ExcessHet=0.0000;FS=17.177;MQ=58.66;MQRankSum=-7.522;QD=3.19;ReadPosRankSum=-3.117;SOR=3.950;VarDP=58 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:99:63:.:.:0,257 0|1:50,8:58:99:.:0|1:2632363_C_T:185,0,2075:2632363:22,28,0,8 +chrX 2632609 . A G 3790 . AC=3;AF=1.00;AN=3;AS_AltDP=116;AS_QD=32.65;BaseQRankSum=3.377;DP=121;ExcessHet=0.0000;FS=3.278;MQ=59.50;MQRankSum=0;QD=32.65;ReadPosRankSum=-0.347;SOR=0.446;VarDP=117 GT:AD:DP:GQ:PL:SB 1:1,59:60:99:1984,0:0,1,33,26 1/1:0,57:57:99:1836,171,0:0,0,29,28 +chrX 2633770 . T C 749 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=17.31;BaseQRankSum=-0.084;DP=111;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=17.31;ReadPosRankSum=1.089;SOR=0.593;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:99:66:0,1487 0/1:17,28:45:99:.:779,0,396:9,8,14,14 +chrX 2633841 . G A 3145 . AC=3;AF=1.00;AN=3;AS_AltDP=96;AS_QD=33.07;DP=96;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.07;SOR=0.778;VarDP=96 GT:AD:DP:GQ:PL:SB 1:0,44:44:99:1458,0:0,0,18,26 1/1:0,52:52:99:1717,155,0:0,0,32,20 +chrX 2635620 . G A 818 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=16.00;BaseQRankSum=2.846;DP=118;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=16.00;ReadPosRankSum=0.492;SOR=0.760;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,1276 0/1:24,29:53:99:.:848,0,600:12,12,14,15 +chrX 2635801 . A G 4283 . AC=3;AF=1.00;AN=3;AS_AltDP=132;AS_QD=32.67;DP=136;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.67;SOR=1.249;VarDP=132 GT:AD:DP:GQ:PL:SB 1:0,80:80:99:2581,0:0,0,31,49 1/1:0,52:52:99:1732,156,0:0,0,20,32 +chrX 2636390 . C CA,CAA 1455.97 . AC=1,2;AF=0.333,0.667;AN=3;AS_AltDP=29,40;AS_QD=36.94,30.90;BaseQRankSum=1.966;DP=108;ExcessHet=0.0000;FS=0.000;MQ=59.51;MQRankSum=-0.12;QD=21.06;ReadPosRankSum=-0.438;SOR=0.781;VarDP=71 GT:AD:DP:GQ:PL:SB 2:2,16,19:37:29:577,29,0:1,1,21,14 1/2:0,13,21:34:99:918,442,337,270,0,197:0,0,15,19 +chrX 2636698 . CAAA CA,C 2126.97 . AC=3,0;AF=1.00,0.00;AN=3;AS_AltDP=71,2;AS_QD=29.67,29.30;DP=132;ExcessHet=0.0000;FS=6.687;MQ=59.32;MQRankSum=-0.116;QD=28.88;SOR=0.448;VarDP=75 GT:AD:DP:GQ:PL:SB 1:1,35,0:36:99:1041,0,1050:0,1,18,17 1/1:1,36,2:39:93:1125,113,0,825,93,873:0,1,22,16 +chrX 2636855 . G T 4606 . AC=3;AF=1.00;AN=3;AS_AltDP=141;AS_QD=32.88;DP=148;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.88;SOR=0.736;VarDP=141 GT:AD:DP:GQ:PL:SB 1:0,70:70:99:2313,0:0,0,36,34 1/1:0,71:71:99:2323,213,0:0,0,33,38 +chrX 2637528 . G A 3621 . AC=3;AF=1.00;AN=3;AS_AltDP=110;AS_QD=33.19;DP=114;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.19;SOR=0.846;VarDP=110 GT:AD:DP:GQ:PL:SB 1:0,64:64:99:2133,0:0,0,32,32 1/1:0,46:46:99:1518,137,0:0,0,19,27 +chrX 2637983 . C G 996 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=9.24;BaseQRankSum=0.021;DP=117;ExcessHet=0.0000;FS=0.721;MQ=60.00;MQRankSum=0;QD=9.24;ReadPosRankSum=-0.078;SOR=0.827;VarDP=111 GT:AD:DP:GQ:PL:SB 1:23,38:61:99:476,0:11,12,12,26 0/1:28,22:50:99:550,0,754:11,17,12,10 +chrX 2638020 . T C 957 . AC=2;AF=0.667;AN=3;AS_AltDP=64;AS_QD=8.51;BaseQRankSum=-1.818;DP=123;ExcessHet=0.0000;FS=1.498;MQ=60.00;MQRankSum=0;QD=8.51;ReadPosRankSum=1.373;SOR=0.532;VarDP=116 GT:AD:DP:GQ:PL:SB 1:25,35:60:99:253,0:10,15,15,20 0/1:27,29:56:99:734,0,741:12,15,15,14 +chrX 2638385 . C G 928 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=15.21;BaseQRankSum=1.3;DP=127;ExcessHet=0.0000;FS=6.916;MQ=59.70;MQRankSum=0;QD=15.21;ReadPosRankSum=0.285;SOR=0.642;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,1603 0/1:27,36:63:99:.:958,0,625:10,17,20,16 +chrX 2638626 . C T 907 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=16.16;BaseQRankSum=0.756;DP=122;ExcessHet=0.0000;FS=7.380;MQ=60.00;MQRankSum=0;QD=16.16;ReadPosRankSum=-1.303;SOR=1.101;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,1603 0/1:24,34:58:99:.:937,0,590:14,10,13,21 +chrX 2639107 . C G 888 . AC=2;AF=0.667;AN=3;AS_AltDP=65;AS_QD=7.46;BaseQRankSum=-0.186;DP=126;ExcessHet=0.0000;FS=8.223;MQ=60.00;MQRankSum=0;QD=7.46;ReadPosRankSum=0.256;SOR=0.959;VarDP=123 GT:AD:DP:GQ:PL:SB 1:30,42:72:99:302,0:15,15,18,24 0/1:28,23:51:99:616,0,775:17,11,9,14 +chrX 2639243 . T C 1968 . AC=2;AF=0.667;AN=3;AS_AltDP=65;AS_QD=30.74;DP=131;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.74;SOR=0.787;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,343 1/1:0,65:65:99:.:1998,194,0:0,0,34,31 +chrX 2639269 . T C 3859 . AC=3;AF=1.00;AN=3;AS_AltDP=117;AS_QD=33.24;DP=122;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.24;SOR=0.818;VarDP=117 GT:AD:DP:GQ:PL:SB 1:0,58:58:99:1954,0:0,0,32,26 1/1:0,59:59:99:1935,177,0:0,0,30,29 +chrX 2639580 . G T 3649 . AC=3;AF=1.00;AN=3;AS_AltDP=116;AS_QD=31.72;DP=121;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.72;SOR=0.838;VarDP=116 GT:AD:DP:GQ:PL:SB 1:0,55:55:99:1750,0:0,0,24,31 1/1:0,61:61:99:1929,182,0:0,0,30,31 +chrX 2639844 . TACAC T 371.97 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=7.09;BaseQRankSum=0.701;DP=123;ExcessHet=0.0000;FS=2.258;MQ=60.00;MQRankSum=0;QD=7.09;ReadPosRankSum=-1.611;SOR=0.832;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 1:24,34:58:99:.:411,0:11,13,19,15 0/0:.:63:99:63:0,120,1800 +chrX 2640176 . A G 1867 . AC=3;AF=1.00;AN=3;AS_AltDP=82;AS_QD=17.90;BaseQRankSum=-2.286;DP=111;ExcessHet=0.0000;FS=1.933;MQ=60.00;MQRankSum=0;QD=17.90;ReadPosRankSum=2.247;SOR=0.453;VarDP=106 GT:AD:DP:GQ:PL:SB 1:24,30:54:99:151,0:9,15,14,16 1/1:0,52:52:99:1746,156,0:0,0,23,29 +chrX 2641206 . T G 2084 . AC=3;AF=1.00;AN=3;AS_AltDP=91;AS_QD=17.92;BaseQRankSum=-1.719;DP=119;ExcessHet=0.0000;FS=7.277;MQ=60.00;MQRankSum=0;QD=17.92;ReadPosRankSum=-0.007;SOR=0.813;VarDP=118 GT:AD:DP:GQ:PL:SB 1:27,39:66:99:357,0:16,11,18,21 1/1:0,52:52:99:1757,156,0:0,0,21,31 +chrX 2641273 . C T 640 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=13.96;BaseQRankSum=0.882;DP=108;ExcessHet=0.0000;FS=4.301;MQ=60.00;MQRankSum=0;QD=13.96;ReadPosRankSum=0.454;SOR=0.238;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:99:60:0,1564 0/1:24,24:48:99:.:670,0,647:17,7,13,11 +chrX 2641543 . A AT 525.97 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=9.11;BaseQRankSum=-2.366;DP=131;ExcessHet=0.0000;FS=9.506;MQ=60.00;MQRankSum=0;QD=9.11;ReadPosRankSum=1.804;SOR=1.888;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:99:60:0,1564 0/1:32,30:62:99:.:565,0,645:14,18,7,23 +chrX 2641696 . A G 206 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=4.37;BaseQRankSum=-1.066;DP=110;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=4.37;ReadPosRankSum=-0.77;SOR=0.719;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 1:23,31:54:99:.:236,0:14,9,19,12 0/0:.:56:63:56:0,63,1346 +chrX 2641910 . G C 2732 . AC=2;AF=0.667;AN=3;AS_AltDP=96;AS_QD=22.27;BaseQRankSum=0.066;DP=130;ExcessHet=0.0000;FS=0.817;MQ=59.96;MQRankSum=0;QD=22.27;ReadPosRankSum=-0.563;SOR=0.546;VarDP=124 GT:AD:DP:GQ:PL:SB 1:1,74:75:99:2190,0:1,0,32,42 0/1:27,22:49:99:572,0,751:10,17,10,12 +chrX 2641942 . A C 531 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=10.79;BaseQRankSum=0;DP=130;ExcessHet=0.0000;FS=1.139;MQ=60.00;MQRankSum=0;QD=10.79;ReadPosRankSum=0.935;SOR=0.914;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:75:99:75:0,537 0/1:31,21:52:99:.:561,0,898:14,14,10,8 +chrX 2642250 . CAAAG C 500.97 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=9.64;BaseQRankSum=1.889;DP=122;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=9.64;ReadPosRankSum=-0.896;SOR=0.636;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 1:22,34:56:99:.:540,0:8,14,13,21 0/0:.:62:99:62:0,112,1618 +chrX 2642324 . C A 798 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=12.55;BaseQRankSum=1.204;DP=134;ExcessHet=0.0000;FS=6.633;MQ=60.00;MQRankSum=0;QD=12.55;ReadPosRankSum=0.964;SOR=0.836;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:99:68:0,253 0/1:35,31:66:99:.:828,0,918:21,14,13,18 +chrX 2642537 . A T 189 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=3.32;BaseQRankSum=0.674;DP=134;ExcessHet=0.0000;FS=6.652;MQ=60.00;MQRankSum=0;QD=3.32;ReadPosRankSum=0.052;SOR=0.858;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 1:30,36:66:99:.:219,0:12,18,21,15 0/0:.:68:99:68:0,120,1800 +chrX 2642714 . C T 402 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=7.32;BaseQRankSum=0.575;DP=130;ExcessHet=0.0000;FS=1.025;MQ=60.00;MQRankSum=0;QD=7.32;ReadPosRankSum=0.521;SOR=0.481;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 1:23,36:59:99:.:432,0:13,10,18,18 0/0:.:68:99:68:0,120,1800 +chrX 2642997 . G A 203 . AC=1;AF=0.333;AN=3;AS_AltDP=39;AS_QD=3.28;BaseQRankSum=0.241;DP=140;ExcessHet=0.0000;FS=3.269;MQ=60.00;MQRankSum=0;QD=3.28;ReadPosRankSum=0;SOR=0.352;VarDP=71 GT:AD:DP:GQ:MIN_DP:PL:SB 1:32,39:71:99:.:233,0:12,20,19,20 0/0:.:68:99:68:0,120,1800 +chrX 2643104 . A G 605 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=11.34;BaseQRankSum=-1.928;DP=119;ExcessHet=0.0000;FS=2.268;MQ=60.00;MQRankSum=0;QD=11.34;ReadPosRankSum=-0.394;SOR=0.785;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,1275 0/1:29,27:56:99:.:635,0,780:16,13,12,15 +chrX 2643614 . G A 3319 . AC=3;AF=1.00;AN=3;AS_AltDP=105;AS_QD=31.30;BaseQRankSum=2.369;DP=112;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=31.30;ReadPosRankSum=0.882;SOR=0.876;VarDP=107 GT:AD:DP:GQ:PL:SB 1:1,49:50:99:1563,0:0,1,23,26 1/1:1,56:57:99:1786,160,0:1,0,25,31 +chrX 2643832 . G A 149 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=4.07;BaseQRankSum=1.711;DP=111;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=4.07;ReadPosRankSum=0.849;SOR=0.829;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 1:20,24:44:99:.:179,0:9,11,10,14 0/0:.:64:99:64:0,120,1800 +chrX 2644012 . T C 1175 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=11.59;BaseQRankSum=-1.478;DP=108;ExcessHet=0.0000;FS=2.593;MQ=60.00;MQRankSum=0;QD=11.59;ReadPosRankSum=-0.204;SOR=0.447;VarDP=104 GT:AD:DP:GQ:PL:SB 1:18,25:43:99:213,0:9,9,13,12 0/1:26,35:61:99:992,0,719:9,17,16,19 +chrX 2644095 . T G 1060 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=9.65;BaseQRankSum=2.286;DP=117;ExcessHet=0.0000;FS=3.453;MQ=60.00;MQRankSum=0;QD=9.65;ReadPosRankSum=1.32;SOR=0.552;VarDP=113 GT:AD:DP:GQ:PL:SB 1:24,30:54:99:254,0:15,9,16,14 0/1:29,30:59:99:836,0,716:15,14,13,17 +chrX 2644297 . C T 885 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=16.05;BaseQRankSum=3.107;DP=121;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=16.05;ReadPosRankSum=0.997;SOR=0.738;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,1530 0/1:25,32:57:99:.:915,0,608:12,13,15,17 +chrX 2644385 . C CT 1120.97 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=16.81;BaseQRankSum=0.774;DP=136;ExcessHet=0.0000;FS=0.928;MQ=60.00;MQRankSum=0;QD=16.81;ReadPosRankSum=-0.781;SOR=0.546;VarDP=69 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,1530 0/1:35,34:69:99:.:1160,0,1199:22,13,20,14 +chrX 2644535 . G A 917 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=8.23;BaseQRankSum=1.29;DP=123;ExcessHet=0.0000;FS=5.818;MQ=60.00;MQRankSum=0;QD=8.23;ReadPosRankSum=0.964;SOR=0.467;VarDP=115 GT:AD:DP:GQ:PL:SB 1:27,29:56:99:100,0:17,10,16,13 0/1:28,31:59:99:847,0,717:16,12,13,18 +chrX 2644812 . G A 209 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=3.62;BaseQRankSum=2.454;DP=137;ExcessHet=0.0000;FS=2.138;MQ=59.83;MQRankSum=-0.911;QD=3.62;ReadPosRankSum=-1.375;SOR=0.430;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 1:31,35:66:99:.:239,0:10,21,14,21 0/0:.:66:99:66:0,120,1800 +chrX 2644986 . A G 477 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=10.56;BaseQRankSum=-0.068;DP=100;ExcessHet=0.0000;FS=2.521;MQ=60.00;MQRankSum=0;QD=10.56;ReadPosRankSum=0.858;SOR=0.368;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:52:99:52:0,153 0/1:28,20:48:99:.:507,0,774:11,17,10,10 +chrX 2645266 . AAAAAG A 261.97 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=8.60;BaseQRankSum=0;DP=91;ExcessHet=0.0000;FS=1.451;MQ=59.14;MQRankSum=0.739;QD=8.60;ReadPosRankSum=0.459;SOR=0.641;VarDP=35 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:52:99:52:0,153 0/1:24,11:35:99:.:301,0,877:14,10,5,6 +chrX 2645298 . T C 735 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=17.00;BaseQRankSum=-0.128;DP=98;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=17.00;ReadPosRankSum=-1.291;SOR=0.543;VarDP=45 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:52:99:52:.:.:0,153 0|1:25,20:45:99:.:0|1:2645298_T_C:765,0,990:2645298:16,9,12,8 +chrX 2645299 . G A 735 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=17.00;BaseQRankSum=0.939;DP=98;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=17.00;ReadPosRankSum=-1.291;SOR=0.543;VarDP=45 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:52:99:52:.:.:0,153 0|1:25,20:45:99:.:0|1:2645298_T_C:765,0,990:2645298:16,9,12,8 +chrX 2645360 . A G 522 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=12.00;BaseQRankSum=-1.277;DP=102;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=12.00;ReadPosRankSum=0.792;SOR=0.560;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:52:99:52:0,153 0/1:24,22:46:99:.:552,0,666:14,10,12,10 +chrX 2645405 . A AT 418.97 . AC=1;AF=0.500;AN=2;AS_AltDP=22;AS_QD=9.16;BaseQRankSum=-0.348;DP=110;ExcessHet=0.0000;FS=1.088;MQ=60.00;MQRankSum=0;QD=9.16;ReadPosRankSum=0.763;SOR=0.917;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB .:.:55:0:55:0,0 0/1:28,22:50:99:.:458,0,638:15,13,13,9 +chrX 2645638 . C A 717 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=16.98;BaseQRankSum=0.901;DP=100;ExcessHet=0.0000;FS=6.702;MQ=60.00;MQRankSum=0;QD=16.98;ReadPosRankSum=-0.43;SOR=0.169;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:52:99:52:0,1330 0/1:18,26:44:99:.:747,0,474:5,13,13,13 +chrX 2645790 . G A 1058 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=23.15;BaseQRankSum=-0.086;DP=101;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=23.15;ReadPosRankSum=1.509;SOR=0.602;VarDP=47 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:52:99:52:.:.:0,1330 0|1:19,28:47:99:.:0|1:2645790_G_A:1088,0,682:2645790:10,9,14,14 +chrX 2645798 . C T 1063 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=24.29;BaseQRankSum=0.81;DP=98;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=24.29;ReadPosRankSum=0.844;SOR=0.722;VarDP=45 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:52:99:52:.:.:0,1330 0|1:17,28:45:99:.:0|1:2645790_G_A:1093,0,619:2645790:9,8,15,13 +chrX 2645818 . G A 455 . AC=1;AF=0.500;AN=2;AS_AltDP=50;AS_QD=4.45;BaseQRankSum=2.273;DP=114;ExcessHet=0.0000;FS=1.553;MQ=60.00;MQRankSum=0;QD=4.45;ReadPosRankSum=0.617;SOR=0.927;VarDP=109 GT:AD:DP:GQ:PL:SB .:33,32:65:1:1,0:15,18,13,19 0/1:26,18:44:99:484,0,652:13,13,8,10 +chrX 2645850 . C G 569 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=16.19;BaseQRankSum=0.828;DP=103;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=16.19;ReadPosRankSum=-0.874;SOR=0.566;VarDP=37 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,179 0/1:16,21:37:99:.:599,0,415:7,9,10,11 +chrX 2645910 . G C 3898 . AC=3;AF=1.00;AN=3;AS_AltDP=121;AS_QD=32.46;DP=122;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.46;SOR=0.888;VarDP=121 GT:AD:DP:GQ:PL:SB 1:0,60:60:99:1947,0:0,0,25,35 1/1:0,61:61:99:1981,183,0:0,0,30,31 +chrX 2645973 . C G 862 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=13.31;BaseQRankSum=3.45;DP=120;ExcessHet=0.0000;FS=4.853;MQ=60.00;MQRankSum=0;QD=13.31;ReadPosRankSum=0.22;SOR=1.255;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:53:99:53:0,99 0/1:35,32:67:99:.:892,0,821:18,17,12,20 +chrX 2646009 . T C 1943 . AC=2;AF=0.667;AN=3;AS_AltDP=64;AS_QD=30.83;DP=119;ExcessHet=0.0000;FS=0.000;MQ=59.90;QD=30.83;SOR=1.044;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:53:99:53:0,99 1/1:0,64:64:99:.:1973,191,0:0,0,27,37 +chrX 2646057 . C CA 82.97 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=2.30;BaseQRankSum=-1.855;DP=118;ExcessHet=0.0000;FS=0.000;MQ=59.91;MQRankSum=1.137;QD=2.30;ReadPosRankSum=0.849;SOR=0.854;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 1:24,29:53:99:.:122,0:14,10,18,11 0/0:.:64:99:64:0,120,1800 +chrX 2646223 . T A,TA 464 . AC=1,0;AF=0.500,0.00;AN=2;AS_AltDP=24,0;AS_QD=9.69,0.00;BaseQRankSum=0.053;DP=131;ExcessHet=0.0000;FS=4.045;MQ=59.82;MQRankSum=0.982;QD=9.69;ReadPosRankSum=1.397;SOR=1.413;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB .:.:74:0:74:0,0,0 0/1:27,24,0:51:99:.:494,0,731,630,718,1477:13,14,8,16 +chrX 2646369 . C T 588 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=11.44;BaseQRankSum=1.622;DP=120;ExcessHet=0.0000;FS=5.785;MQ=60.00;MQRankSum=0;QD=11.44;ReadPosRankSum=0.114;SOR=1.609;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,120 0/1:31,23:54:99:.:618,0,819:16,15,16,7 +chrX 2646642 . C T 955 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=15.89;BaseQRankSum=-0.207;DP=128;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=15.89;ReadPosRankSum=0.452;SOR=0.627;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,120 0/1:25,37:62:99:.:985,0,608:14,11,20,17 +chrX 2646974 . C T 933 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=16.05;BaseQRankSum=-2.373;DP=125;ExcessHet=0.0000;FS=2.248;MQ=60.00;MQRankSum=0;QD=16.05;ReadPosRankSum=0.395;SOR=0.682;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,120 0/1:23,37:60:99:.:963,0,610:13,10,17,20 +chrX 2647008 . A C 974 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=16.19;BaseQRankSum=-1.117;DP=127;ExcessHet=0.0000;FS=6.985;MQ=60.00;MQRankSum=0;QD=16.19;ReadPosRankSum=-0.152;SOR=1.256;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,120 0/1:24,38:62:99:.:1004,0,606:13,11,14,24 +chrX 2647255 . CGGTT GGGTT,C 708 . AC=1,0;AF=0.333,0.00;AN=3;AS_AltDP=29,2;AS_QD=12.10,0.00;BaseQRankSum=-0.061;DP=127;ExcessHet=0.0000;FS=5.150;MQ=60.00;MQRankSum=0;QD=11.71;ReadPosRankSum=-0.956;SOR=0.285;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,120,120 0/1:32,29,2:63:99:.:738,0,825,829,915,2473:22,10,17,14 +chrX 2647390 . C A 578 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=13.82;BaseQRankSum=-1.398;DP=114;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.82;ReadPosRankSum=-0.364;SOR=0.538;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,120 0/1:22,22:44:99:.:608,0,630:13,9,12,10 +chrX 2647401 . C A 617 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=15.05;BaseQRankSum=-0.386;DP=107;ExcessHet=0.0000;FS=1.171;MQ=60.00;MQRankSum=0;QD=15.05;ReadPosRankSum=-1.778;SOR=0.963;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,120 0/1:20,23:43:99:.:647,0,541:10,10,13,10 +chrX 2647547 . T C 815 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=13.41;BaseQRankSum=-2.198;DP=132;ExcessHet=0.0000;FS=5.062;MQ=60.00;MQRankSum=0;QD=13.41;ReadPosRankSum=0.847;SOR=0.393;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,120 0/1:30,33:63:99:.:845,0,824:11,19,17,16 +chrX 2647579 . A G 1038 . AC=1;AF=0.333;AN=3;AS_AltDP=40;AS_QD=16.69;BaseQRankSum=-1.641;DP=129;ExcessHet=0.0000;FS=11.612;MQ=60.00;MQRankSum=0;QD=16.69;ReadPosRankSum=0.666;SOR=0.509;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,120 0/1:24,40:64:99:.:1068,0,597:7,17,22,18 +chrX 2647791 . G A 808 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=16.76;BaseQRankSum=-0.287;DP=115;ExcessHet=0.0000;FS=4.001;MQ=60.00;MQRankSum=0;QD=16.76;ReadPosRankSum=0.315;SOR=0.439;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,120 0/1:21,29:50:99:.:838,0,568:13,8,14,15 +chrX 2648075 . T A 1183 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=24.26;BaseQRankSum=-0.846;DP=115;ExcessHet=0.0000;FS=2.441;MQ=60.00;MQRankSum=0;QD=24.26;ReadPosRankSum=-1.209;SOR=0.526;VarDP=50 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:64:99:64:.:.:0,120 0|1:19,31:50:99:.:0|1:2648075_T_A:1213,0,704:2648075:11,8,15,16 +chrX 2648082 . C T 1129 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=24.15;BaseQRankSum=-0.403;DP=112;ExcessHet=0.0000;FS=2.552;MQ=60.00;MQRankSum=0;QD=24.15;ReadPosRankSum=-0.359;SOR=0.711;VarDP=48 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:64:99:64:.:.:0,120 0|1:19,29:48:99:.:0|1:2648075_T_A:1159,0,710:2648075:11,8,13,16 +chrX 2648225 . GTTT G 1120.97 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=18.41;BaseQRankSum=0.766;DP=127;ExcessHet=0.0000;FS=4.987;MQ=60.00;MQRankSum=0;QD=18.41;ReadPosRankSum=2.11;SOR=0.796;VarDP=63 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:64:99:64:.:.:0,120 0|1:33,30:63:99:.:0|1:2648225_GTTT_G:1160,0,1295:2648225:19,14,13,17 +chrX 2648229 . C CCCAT 1120.97 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=18.41;BaseQRankSum=0.068;DP=128;ExcessHet=0.0000;FS=4.987;MQ=60.00;MQRankSum=0;QD=18.41;ReadPosRankSum=1.824;SOR=0.796;VarDP=63 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:64:99:64:.:.:0,120 0|1:33,30:63:99:.:0|1:2648225_GTTT_G:1160,0,1295:2648225:19,14,13,17 +chrX 2648442 . A G 967 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=18.13;BaseQRankSum=2.685;DP=120;ExcessHet=0.0000;FS=1.120;MQ=60.00;MQRankSum=0;QD=18.13;ReadPosRankSum=0.789;SOR=0.976;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,120 0/1:21,34:55:99:.:997,0,480:13,8,23,11 +chrX 2648470 . A G 826 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=17.12;BaseQRankSum=-1.892;DP=119;ExcessHet=0.0000;FS=8.724;MQ=60.00;MQRankSum=0;QD=17.12;ReadPosRankSum=0.081;SOR=1.618;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,120 0/1:18,32:50:99:.:856,0,466:8,10,22,10 +chrX 2648543 . T C 1013 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=16.05;BaseQRankSum=0.159;DP=129;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=16.05;ReadPosRankSum=-1.398;SOR=0.813;VarDP=65 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:64:99:64:.:.:0,120 0|1:37,28:65:99:.:0|1:2648543_T_C:1043,0,1448:2648543:13,24,9,19 +chrX 2648557 . A G 978 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=15.51;BaseQRankSum=-0.025;DP=129;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=15.51;ReadPosRankSum=-1.605;SOR=0.716;VarDP=65 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:64:99:64:.:.:0,120 0|1:38,27:65:99:.:0|1:2648543_T_C:1008,0,1483:2648543:13,25,9,18 +chrX 2648600 . A G 882 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=13.41;BaseQRankSum=0.671;DP=135;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.41;ReadPosRankSum=-1.172;SOR=0.613;VarDP=68 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,120 0/1:35,33:68:99:.:912,0,962:11,24,11,22 +chrX 2648709 . T C 924 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=14.68;BaseQRankSum=-0.741;DP=131;ExcessHet=0.0000;FS=6.715;MQ=60.00;MQRankSum=0;QD=14.68;ReadPosRankSum=-1.835;SOR=0.655;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,120 0/1:29,36:65:99:.:954,0,763:18,11,16,20 +chrX 2648861 . CT C 444.97 . AC=1;AF=0.333;AN=3;AS_AltDP=40;AS_QD=7.22;BaseQRankSum=-1.81;DP=128;ExcessHet=0.0000;FS=4.843;MQ=60.00;MQRankSum=0;QD=7.22;ReadPosRankSum=-0.243;SOR=0.891;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 1:27,40:67:99:.:484,0:15,12,17,23 0/0:.:58:99:58:0,120,1562 +chrX 2648999 . G A 646 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=14.70;BaseQRankSum=-0.488;DP=115;ExcessHet=0.0000;FS=5.972;MQ=60.00;MQRankSum=0;QD=14.70;ReadPosRankSum=0.165;SOR=0.543;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:69:99:69:0,1800 0/1:22,24:46:99:.:676,0,616:8,14,13,11 +chrX 2649162 . C T 710 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=12.76;BaseQRankSum=-0.308;DP=128;ExcessHet=0.0000;FS=9.829;MQ=60.00;MQRankSum=0;QD=12.76;ReadPosRankSum=0.444;SOR=0.142;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:69:99:69:0,1800 0/1:30,28:58:99:.:740,0,789:22,8,14,14 +chrX 2649196 . C G 4484 . AC=2;AF=0.667;AN=3;AS_AltDP=106;AS_QD=34.20;BaseQRankSum=1.646;DP=134;ExcessHet=0.0000;FS=0.823;MQ=60.00;MQRankSum=0;QD=34.20;ReadPosRankSum=-1.161;SOR=0.853;VarDP=132 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,78:78:99:.:.:3448,0:.:0,0,42,36 0|1:26,28:54:99:0|1:2649196_C_G:1066,0,945:2649196:13,13,15,13 +chrX 2649204 . G C 4469 . AC=2;AF=0.667;AN=3;AS_AltDP=105;AS_QD=34.61;BaseQRankSum=1.041;DP=132;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=34.61;ReadPosRankSum=-1.073;SOR=0.752;VarDP=130 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,76:76:99:.:.:3389,0:.:0,0,41,35 0|1:25,29:54:99:0|1:2649196_C_G:1110,0,920:2649196:13,12,15,14 +chrX 2649244 . C T 615 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=12.65;BaseQRankSum=2.775;DP=118;ExcessHet=0.0000;FS=2.388;MQ=60.00;MQRankSum=0;QD=12.65;ReadPosRankSum=-0.701;SOR=0.869;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,144 0/1:28,23:51:99:.:645,0,722:15,13,10,13 +chrX 2649336 . T C 630 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=10.15;BaseQRankSum=-0.523;DP=135;ExcessHet=0.0000;FS=8.969;MQ=60.00;MQRankSum=0;QD=10.15;ReadPosRankSum=1.239;SOR=0.470;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,144 0/1:39,26:65:99:.:660,0,1065:13,26,14,12 +chrX 2649506 . G T 571 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=10.36;BaseQRankSum=-1.361;DP=126;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=10.36;ReadPosRankSum=-1.029;SOR=0.710;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,144 0/1:33,25:58:99:.:601,0,894:17,16,13,12 +chrX 2649606 . G C 394 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=9.64;BaseQRankSum=1.115;DP=115;ExcessHet=0.0000;FS=4.534;MQ=60.00;MQRankSum=0;QD=9.64;ReadPosRankSum=0.671;SOR=0.697;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,144 0/1:28,16:44:99:.:424,0,821:17,11,7,9 +chrX 2649791 . A G 1114 . AC=1;AF=0.333;AN=3;AS_AltDP=42;AS_QD=16.34;BaseQRankSum=-0.319;DP=139;ExcessHet=0.0000;FS=8.375;MQ=60.00;MQRankSum=0;QD=16.34;ReadPosRankSum=-0.726;SOR=1.134;VarDP=70 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,144 0/1:28,42:70:99:.:1144,0,699:16,12,16,26 +chrX 2649963 . TTGGATGGATGGATGGA T,TTGGATGGATGGA 974.97 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=0,27;AS_QD=0.00,18.44;BaseQRankSum=-1.448;DP=154;ExcessHet=0.0000;FS=0.000;MQ=59.50;MQRankSum=1.754;QD=18.44;ReadPosRankSum=1.742;SOR=0.634;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,144,144 0/2:28,0,27:55:99:.:1014,1138,2836,0,1163,1419:12,16,12,15 +chrX 2649979 . A AGGGATGGATGGGTGGTTGGATGGATATT,AGGGATGGATGGGTGTTTGGATGGATATT,*,AGGGATGGATGGGTGTTTGGATGGATGTT 2531.97 . AC=0,2,0,0;AF=0.00,0.667,0.00,0.00;AN=3;AS_AltDP=1,50,0,4;AS_QD=9.85,28.57,0.00,0.00;BaseQRankSum=-0.144;DP=151;ExcessHet=0.0000;FS=0.000;MQ=59.26;MQRankSum=-2.958;QD=27.06;ReadPosRankSum=-0.079;SOR=0.668;VarDP=95 GT:AD:DP:GQ:PL:SB 2:0,1,40,0,0:41:99:1920,1516,0,2120,2120:0,0,11,19 0/2:40,0,10,0,4:54:99:651,827,2979,0,1838,1739,443,2524,1696,2707,690,2769,1701,2295,2743:17,23,8,6 +chrX 2650032 . CAGGT C 3164.97 . AC=2;AF=0.667;AN=3;AS_AltDP=76;AS_QD=29.67;BaseQRankSum=-0.476;DP=113;ExcessHet=0.0000;FS=0.819;MQ=60.00;MQRankSum=0;QD=29.67;ReadPosRankSum=1.688;SOR=0.566;VarDP=108 GT:AD:DP:GQ:PL:SB 1:0,53:53:99:2345,0:0,0,18,35 0/1:32,23:55:99:859,0,1254:11,21,11,12 +chrX 2650140 . A T 3186 . AC=2;AF=0.667;AN=3;AS_AltDP=81;AS_QD=32.16;BaseQRankSum=-1.711;DP=101;ExcessHet=0.0000;FS=0.966;MQ=59.98;MQRankSum=0;QD=32.16;ReadPosRankSum=0.427;SOR=0.879;VarDP=100 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,52:52:99:.:.:2117,0:.:0,0,23,29 0|1:19,29:48:99:0|1:2650140_A_T:1099,0,624:2650140:9,10,12,17 +chrX 2650163 . C A 3200 . AC=2;AF=0.667;AN=3;AS_AltDP=80;AS_QD=32.63;BaseQRankSum=-2.187;DP=100;ExcessHet=0.0000;FS=3.499;MQ=60.00;MQRankSum=0;QD=32.63;ReadPosRankSum=0.692;SOR=0.644;VarDP=99 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,50:50:99:.:.:2100,0:.:0,0,24,26 0|1:19,30:49:99:0|1:2650140_A_T:1130,0,646:2650140:11,8,13,17 +chrX 2650263 . AGATG A,AGATGGATGGATG 619.97 . AC=1,0;AF=0.333,0.00;AN=3;AS_AltDP=26,0;AS_QD=14.64,0.00;BaseQRankSum=-0.638;DP=106;ExcessHet=0.0000;FS=1.154;MQ=59.55;MQRankSum=0;QD=14.64;ReadPosRankSum=-0.993;SOR=0.769;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:50:99:50:0,765,765 0/1:19,26,0:45:99:.:659,0,571,784,604,1793:9,10,14,12 +chrX 2650285 . ATGGT A 1233.97 . AC=2;AF=0.667;AN=3;AS_AltDP=40;AS_QD=18.19;BaseQRankSum=1.556;DP=92;ExcessHet=0.0000;FS=0.000;MQ=59.49;MQRankSum=0;QD=18.19;ReadPosRankSum=0.033;SOR=0.617;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,21:21:99:799,0:0,0,9,7 0/1:30,19:49:99:474,0,770:17,13,9,8 +chrX 2650393 . G A 2053 . AC=2;AF=0.667;AN=3;AS_AltDP=67;AS_QD=21.93;BaseQRankSum=0.895;DP=96;ExcessHet=0.0000;FS=3.044;MQ=60.00;MQRankSum=0;QD=21.93;ReadPosRankSum=1.561;SOR=1.146;VarDP=95 GT:AD:DP:GQ:PL:SB 1:0,43:43:99:1415,0:0,0,19,24 0/1:28,24:52:99:668,0,786:14,14,8,16 +chrX 2650794 . T C 651 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=14.80;BaseQRankSum=-0.957;DP=96;ExcessHet=0.0000;FS=10.698;MQ=60.00;MQRankSum=0;QD=14.80;ReadPosRankSum=0.474;SOR=0.876;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:51:28:47:0,28 0/1:21,25:46:99:.:681,0,572:7,14,15,10 +chrX 2650863 . C T 431 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=9.60;BaseQRankSum=0.808;DP=97;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=9.60;ReadPosRankSum=-0.628;SOR=0.644;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:51:28:47:0,28 0/1:30,18:48:99:.:461,0,838:13,17,8,10 +chrX 2651071 . C CAT 1113.97 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=11.42;BaseQRankSum=-0.372;DP=108;ExcessHet=0.0000;FS=0.767;MQ=60.00;MQRankSum=0;QD=11.42;ReadPosRankSum=0.068;SOR=0.842;VarDP=101 GT:AD:DP:GQ:PL:SB 1:25,36:61:99:489,0:9,16,11,25 0/1:22,18:40:99:664,0,864:10,12,9,9 +chrX 2651170 . G C 2596 . AC=2;AF=0.667;AN=3;AS_AltDP=82;AS_QD=26.80;BaseQRankSum=1.393;DP=104;ExcessHet=0.0000;FS=1.049;MQ=60.00;MQRankSum=0;QD=26.80;ReadPosRankSum=-0.714;SOR=0.554;VarDP=98 GT:AD:DP:GQ:PL:SB 1:0,59:59:99:1966,0:0,0,31,28 0/1:16,23:39:99:660,0,399:7,9,11,12 +chrX 2651376 . T G 2735 . AC=2;AF=0.667;AN=3;AS_AltDP=91;AS_QD=24.91;BaseQRankSum=-1.525;DP=114;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=24.91;ReadPosRankSum=0.804;SOR=0.760;VarDP=111 GT:AD:DP:GQ:PL:SB 1:0,62:62:99:1979,0:0,0,29,33 0/1:20,29:49:99:786,0,537:10,10,18,11 +chrX 2651467 . G A 421 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=12.89;BaseQRankSum=1.949;DP=89;ExcessHet=0.0000;FS=2.958;MQ=60.00;MQRankSum=0;QD=12.89;ReadPosRankSum=-0.613;SOR=0.321;VarDP=35 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:55:39:52:0,39 0/1:19,16:35:99:.:451,0,500:12,7,8,8 +chrX 2651531 . G A 552 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=12.38;BaseQRankSum=-0.18;DP=99;ExcessHet=0.0000;FS=6.118;MQ=59.84;MQRankSum=-1.023;QD=12.38;ReadPosRankSum=0.832;SOR=1.229;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:55:39:52:0,39 0/1:25,22:47:99:.:582,0,682:14,11,8,14 +chrX 2651586 . T C 2554 . AC=3;AF=1.00;AN=3;AS_AltDP=80;AS_QD=32.30;DP=82;ExcessHet=0.0000;FS=0.000;MQ=59.79;QD=32.30;SOR=0.968;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,42:42:99:1345,0:0,0,27,15 1/1:0,38:38:99:1239,114,0:0,0,18,20 +chrX 2651641 . CA C 73.97 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=3.77;BaseQRankSum=-2.011;DP=86;ExcessHet=0.0000;FS=0.000;MQ=59.13;MQRankSum=-0.298;QD=3.77;ReadPosRankSum=0.024;SOR=0.783;VarDP=30 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:42:99:42:0,556 0/1:19,11:30:99:.:113,0,227:9,10,6,5 +chrX 2651672 . GGAAGAAGAA G,GGAAGAA 2313.97 . AC=1,2;AF=0.333,0.667;AN=3;AS_AltDP=32,43;AS_QD=28.99,30.15;DP=98;ExcessHet=0.0000;FS=0.000;MQ=59.26;QD=31.37;SOR=0.832;VarDP=75 GT:AD:DP:GQ:PL:SB 2:0,20,23:43:99:1027,253,0:0,0,26,17 1/2:0,12,20:32:99:1326,833,894,496,0,435:0,0,14,18 +chrX 2651792 . AT A 2858.97 . AC=3;AF=1.00;AN=3;AS_AltDP=102;AS_QD=28.41;DP=119;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=28.41;SOR=0.815;VarDP=102 GT:AD:DP:GQ:PL:SB 1:0,63:63:99:1778,0:0,0,28,35 1/1:0,39:39:99:1120,117,0:0,0,20,19 +chrX 2652082 . C T 3497 . AC=3;AF=1.00;AN=3;AS_AltDP=107;AS_QD=32.36;BaseQRankSum=4.124;DP=115;ExcessHet=0.0000;FS=0.000;MQ=59.81;MQRankSum=5.197;QD=32.36;ReadPosRankSum=0.137;SOR=1.056;VarDP=109 GT:AD:DP:GQ:PL:SB 1:0,55:55:99:1788,0:0,0,23,32 1/1:2,52:54:99:1739,142,0:1,1,22,30 +chrX 2652353 . C T 673 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=13.26;BaseQRankSum=-0.44;DP=116;ExcessHet=0.0000;FS=2.323;MQ=60.00;MQRankSum=0;QD=13.26;ReadPosRankSum=-0.018;SOR=0.974;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:73:65:63:0,65 0/1:27,26:53:99:.:703,0,748:14,13,11,15 +chrX 2652630 . T C 569 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=13.93;BaseQRankSum=-1.365;DP=110;ExcessHet=0.0000;FS=4.591;MQ=58.96;MQRankSum=-0.578;QD=13.93;ReadPosRankSum=-1.094;SOR=1.502;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:73:65:63:0,65 0/1:21,22:43:99:.:599,0,601:9,12,6,16 +chrX 2653684 . C T 100 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=3.02;BaseQRankSum=0.678;DP=111;ExcessHet=0.0000;FS=2.772;MQ=60.00;MQRankSum=0;QD=3.02;ReadPosRankSum=-0.171;SOR=0.302;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 1:20,23:43:99:.:130,0:14,6,13,10 0/0:.:65:80:65:0,80,1350 +chrX 2654038 . A G 4322 . AC=3;AF=1.00;AN=3;AS_AltDP=134;AS_QD=32.48;DP=138;ExcessHet=0.0000;FS=0.000;MQ=59.93;QD=32.48;SOR=0.818;VarDP=134 GT:AD:DP:GQ:PL:SB 1:0,61:61:99:1935,0:0,0,30,31 1/1:0,73:73:99:2417,219,0:0,0,33,40 +chrX 2654383 . G A 703 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=8.14;BaseQRankSum=2.686;DP=100;ExcessHet=0.0000;FS=1.725;MQ=59.80;MQRankSum=1.078;QD=8.14;ReadPosRankSum=0.229;SOR=0.966;VarDP=90 GT:AD:DP:GQ:PL:SB 1:25,27:52:99:196,0:17,8,11,16 0/1:18,20:38:99:537,0,442:4,14,9,11 +chrX 2654393 . GAAA GAA,G 1678.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=59,12;AS_QD=23.57,32.69;BaseQRankSum=-0.715;DP=113;ExcessHet=0.0000;FS=3.522;MQ=59.83;MQRankSum=-0.112;QD=23.86;ReadPosRankSum=0.619;SOR=0.637;VarDP=72 GT:AD:DP:GQ:PL:SB 1:1,41,0:42:99:886,0,911:1,0,19,22 1/2:0,18,12:30:99:832,388,304,407,0,575:0,0,12,18 +chrX 2654888 . G A 5028 . AC=3;AF=1.00;AN=3;AS_AltDP=138;AS_QD=28.85;DP=143;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=36.65;SOR=0.949;VarDP=138 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,73:73:99:.:.:2683,0:.:0,0,43,30 1|1:0,65:65:99:0|1:2654888_G_A:2375,194,0:2654888:0,0,34,31 +chrX 2654910 . G A 599 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=10.48;BaseQRankSum=0.892;DP=135;ExcessHet=0.0000;FS=2.197;MQ=60.00;MQRankSum=0;QD=10.48;ReadPosRankSum=0.39;SOR=0.431;VarDP=60 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:74:99:74:.:.:0,144 0|1:35,25:60:99:.:0|1:2654888_G_A:629,0,957:2654888:21,14,13,12 +chrX 2655298 . A G 4231 . AC=3;AF=1.00;AN=3;AS_AltDP=133;AS_QD=31.80;BaseQRankSum=1.816;DP=139;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=31.80;ReadPosRankSum=-0.753;SOR=0.298;VarDP=134 GT:AD:DP:GQ:PL:SB 1:1,68:69:99:2173,0:0,1,33,35 1/1:0,65:65:99:2088,194,0:0,0,28,37 +chrX 2655538 . C G 958 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=13.92;BaseQRankSum=-0.129;DP=139;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.92;ReadPosRankSum=-0.207;SOR=0.746;VarDP=71 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,591 0/1:34,37:71:99:.:988,0,894:17,17,19,18 +chrX 2655639 . C T 1002 . AC=1;AF=0.333;AN=3;AS_AltDP=39;AS_QD=13.95;BaseQRankSum=1.59;DP=140;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.95;ReadPosRankSum=-0.466;SOR=0.779;VarDP=74 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,591 0/1:35,39:74:99:.:1032,0,835:16,19,17,22 +chrX 2656563 . T A 863 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=15.40;BaseQRankSum=-2.39;DP=127;ExcessHet=0.0000;FS=2.270;MQ=60.00;MQRankSum=0;QD=15.40;ReadPosRankSum=-0.008;SOR=0.438;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,591 0/1:24,34:58:99:.:893,0,650:8,16,14,20 +chrX 2656935 . A G 580 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=10.34;BaseQRankSum=-2.695;DP=126;ExcessHet=0.0000;FS=7.248;MQ=60.00;MQRankSum=0;QD=10.34;ReadPosRankSum=-0.13;SOR=1.373;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,591 0/1:33,26:59:99:.:610,0,940:15,18,17,9 +chrX 2657110 . G T 918 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=14.15;BaseQRankSum=-1.586;DP=134;ExcessHet=0.0000;FS=2.046;MQ=60.00;MQRankSum=0;QD=14.15;ReadPosRankSum=-0.614;SOR=0.642;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,591 0/1:29,38:67:99:.:948,0,722:13,16,20,18 +chrX 2657304 . C T 1074 . AC=1;AF=0.333;AN=3;AS_AltDP=39;AS_QD=15.77;BaseQRankSum=0.734;DP=140;ExcessHet=0.0000;FS=8.920;MQ=60.00;MQRankSum=0;QD=15.77;ReadPosRankSum=0.509;SOR=1.819;VarDP=70 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,591 0/1:31,39:70:99:.:1104,0,809:17,14,29,10 +chrX 2657565 . T A 3845 . AC=3;AF=1.00;AN=3;AS_AltDP=116;AS_QD=33.41;DP=122;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.41;SOR=1.003;VarDP=116 GT:AD:DP:GQ:PL:SB 1:0,57:57:99:1889,0:0,0,27,30 1/1:0,59:59:99:1986,177,0:0,0,23,36 +chrX 2657703 . G A 1790 . AC=3;AF=1.00;AN=3;AS_AltDP=85;AS_QD=16.11;BaseQRankSum=-2.13;DP=117;ExcessHet=0.0000;FS=2.920;MQ=60.00;MQRankSum=0;QD=16.11;ReadPosRankSum=-1.829;SOR=1.101;VarDP=113 GT:AD:DP:GQ:PL:SB 1:28,37:65:99:214,0:14,14,25,12 1/1:0,48:48:99:1606,144,0:0,0,25,23 +chrX 2658359 . G A 4360 . AC=3;AF=1.00;AN=3;AS_AltDP=134;AS_QD=32.52;BaseQRankSum=-0.35;DP=136;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=32.52;ReadPosRankSum=0.538;SOR=0.248;VarDP=135 GT:AD:DP:GQ:PL:SB 1:0,77:77:99:2540,0:0,0,37,40 1/1:1,57:58:99:1850,139,0:1,0,32,25 +chrX 2658849 . C CT 3216.97 . AC=3;AF=1.00;AN=3;AS_AltDP=113;AS_QD=28.81;DP=134;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=28.81;SOR=0.747;VarDP=113 GT:AD:DP:GQ:PL:SB 1:0,62:62:99:1771,0:0,0,31,31 1/1:0,51:51:99:1485,153,0:0,0,24,27 +chrX 2658898 . CAA C 3347.97 . AC=3;AF=1.00;AN=3;AS_AltDP=92;AS_QD=32.76;BaseQRankSum=-0.65;DP=117;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=36.42;ReadPosRankSum=1.155;SOR=0.260;VarDP=93 GT:AD:DP:GQ:PL:SB 1:0,45:45:99:1688,0:0,0,22,23 1/1:1,47:48:99:1699,118,0:0,1,22,25 +chrX 2659028 . C CGAGA 1974.97 . AC=2;AF=0.667;AN=3;AS_AltDP=68;AS_QD=19.00;BaseQRankSum=0.089;DP=118;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=19.00;ReadPosRankSum=0.114;SOR=0.649;VarDP=106 GT:AD:DP:GQ:PL:SB 1:19,28:47:99:392,0:6,13,11,17 0/1:19,40:59:99:1622,0,667:8,11,15,25 +chrX 2659231 . CTCTCCTCCTCCCTCCCCCCT C 155.97 . AC=1;AF=0.333;AN=3;AS_AltDP=5;AS_QD=19.50;BaseQRankSum=0.765;DP=12;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=19.50;ReadPosRankSum=0.464;SOR=0.693;VarDP=10 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:2:35:1:0,35 0/1:5,5:10:99:.:195,0,195:0,5,0,5 +chrX 2660061 . G C 660 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=16.05;BaseQRankSum=-1.973;DP=52;ExcessHet=0.0000;FS=12.312;MQ=60.00;MQRankSum=0;QD=16.05;ReadPosRankSum=-1.724;SOR=1.806;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:5:24:3:0,24 0/1:18,25:43:99:.:690,0,496:7,11,18,7 +chrX 2660244 . C T 3423 . AC=3;AF=1.00;AN=3;AS_AltDP=105;AS_QD=32.89;DP=112;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.89;SOR=0.791;VarDP=105 GT:AD:DP:GQ:PL:SB 1:0,53:53:99:1727,0:0,0,28,25 1/1:0,52:52:99:1726,156,0:0,0,27,25 +chrX 2660318 . T G 807 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=16.41;BaseQRankSum=-1.152;DP=112;ExcessHet=0.0000;FS=4.058;MQ=60.00;MQRankSum=0;QD=16.41;ReadPosRankSum=1.525;SOR=0.652;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,180 0/1:20,31:51:99:.:837,0,521:12,8,14,17 +chrX 2660670 . T C 1120 . AC=2;AF=0.667;AN=3;AS_AltDP=64;AS_QD=9.27;BaseQRankSum=0.857;DP=133;ExcessHet=0.0000;FS=5.619;MQ=59.86;MQRankSum=0.914;QD=9.27;ReadPosRankSum=-0.693;SOR=1.213;VarDP=124 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:30,41:71:99:.:.:363,0:.:15,15,26,15 0|1:30,23:53:99:0|1:2660670_T_C:787,0,1118:2660670:17,13,15,8 +chrX 2660686 . T G 1082 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=9.27;BaseQRankSum=2.46;DP=124;ExcessHet=0.0000;FS=8.592;MQ=59.85;MQRankSum=0.929;QD=9.27;ReadPosRankSum=0.27;SOR=1.448;VarDP=120 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:30,38:68:99:.:.:294,0:.:14,16,24,14 0|1:29,23:52:99:0|1:2660670_T_C:818,0,1081:2660670:16,13,16,7 +chrX 2661210 . C A 914 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=9.35;BaseQRankSum=-0.027;DP=104;ExcessHet=0.0000;FS=1.620;MQ=59.83;MQRankSum=-0.824;QD=9.35;ReadPosRankSum=0.578;SOR=0.528;VarDP=101 GT:AD:DP:GQ:PL:SB 1:21,26:47:99:124,0:9,12,13,13 0/1:23,31:54:99:820,0,598:9,14,13,18 +chrX 2661256 . G C 1210 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=11.59;BaseQRankSum=-0.334;DP=107;ExcessHet=0.0000;FS=1.559;MQ=59.83;MQRankSum=-0.771;QD=11.59;ReadPosRankSum=0.27;SOR=0.790;VarDP=107 GT:AD:DP:GQ:PL:SB 1:18,27:45:99:294,0:9,9,13,14 0/1:27,35:62:99:946,0,708:14,13,16,19 +chrX 2661288 . C T 705 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=12.05;BaseQRankSum=1.442;DP=111;ExcessHet=0.0000;FS=6.843;MQ=59.85;MQRankSum=0.924;QD=12.05;ReadPosRankSum=-0.523;SOR=1.528;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:42:50:0,42 0/1:34,27:61:99:.:735,0,928:17,17,18,9 +chrX 2661626 . C G 769 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=15.08;BaseQRankSum=-1.32;DP=104;ExcessHet=0.0000;FS=2.294;MQ=60.00;MQRankSum=0;QD=15.08;ReadPosRankSum=-2.541;SOR=1.037;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:42:50:0,42 0/1:23,30:53:99:.:799,0,606:12,11,18,12 +chrX 2661764 . T C 583 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=6.13;BaseQRankSum=0.509;DP=103;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=6.13;ReadPosRankSum=-0.07;SOR=0.765;VarDP=100 GT:AD:DP:GQ:PL:SB 1:27,31:58:99:109,0:13,14,15,16 0/1:22,20:42:99:504,0,539:9,13,7,13 +chrX 2661848 . A C 724 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=7.25;BaseQRankSum=1.111;DP=109;ExcessHet=0.0000;FS=4.878;MQ=59.78;MQRankSum=0;QD=7.25;ReadPosRankSum=0.7;SOR=1.070;VarDP=104 GT:AD:DP:GQ:PL:SB 1:27,37:64:99:338,0:12,15,26,11 0/1:23,17:40:99:416,0,640:12,11,6,11 +chrX 2662029 . A T 290 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=11.85;BaseQRankSum=-0.568;DP=82;ExcessHet=0.0000;FS=11.146;MQ=58.80;MQRankSum=-1.336;QD=11.85;ReadPosRankSum=1.117;SOR=3.126;VarDP=27 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:54:99:54:0,164 0/1:13,14:27:99:.:320,0,431:8,5,13,1 +chrX 2662032 . CA C,CAAAAA 1060.97 . AC=1,2;AF=0.333,0.667;AN=3;AS_AltDP=14,31;AS_QD=3.93,32.42;DP=97;ExcessHet=0.0000;FS=0.000;MQ=58.75;QD=24.44;SOR=0.929;VarDP=45 GT:AD:DP:GQ:PL:SB 2:0,8,14:22:99:438,609,0:0,0,10,12 1/2:0,6,17:23:95:662,607,834,95,0,178:0,0,15,8 +chrX 2662393 . A G 612 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=14.59;BaseQRankSum=1.084;DP=107;ExcessHet=0.0000;FS=1.174;MQ=60.00;MQRankSum=0;QD=14.59;ReadPosRankSum=-0.893;SOR=0.900;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,110 0/1:21,23:44:99:.:642,0,568:11,10,10,13 +chrX 2662548 . T C 548 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=10.51;BaseQRankSum=-0.915;DP=119;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=10.51;ReadPosRankSum=-1.265;SOR=0.772;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,110 0/1:31,24:55:99:.:578,0,863:20,11,16,8 +chrX 2662626 . C CA 269.97 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=7.92;BaseQRankSum=0.599;DP=114;ExcessHet=0.0000;FS=1.243;MQ=59.68;MQRankSum=-1.029;QD=7.92;ReadPosRankSum=-0.944;SOR=0.848;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,110 0/1:21,18:39:99:.:309,0,388:11,10,8,10 +chrX 2662829 . G A 750 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=12.79;BaseQRankSum=2.03;DP=123;ExcessHet=0.0000;FS=0.975;MQ=60.00;MQRankSum=0;QD=12.79;ReadPosRankSum=0.782;SOR=0.788;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,110 0/1:33,28:61:99:.:780,0,894:16,17,15,13 +chrX 2663629 . A G 1899 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=31.62;DP=123;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.62;SOR=1.197;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,110 1/1:0,61:61:99:.:1929,182,0:0,0,37,24 +chrX 2663787 . C T 1775 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=32.23;DP=119;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.23;SOR=0.841;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,110 1/1:0,56:56:99:.:1805,168,0:0,0,26,30 +chrX 2663905 . C A 1622 . AC=2;AF=0.667;AN=3;AS_AltDP=50;AS_QD=33.04;DP=112;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.04;SOR=0.952;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,110 1/1:0,50:50:99:.:1652,150,0:0,0,28,22 +chrX 2663959 . T TAA 1514.97 . AC=3;AF=1.00;AN=3;AS_AltDP=71;AS_QD=17.08;BaseQRankSum=1.365;DP=127;ExcessHet=0.0000;FS=3.412;MQ=59.70;MQRankSum=0;QD=17.08;ReadPosRankSum=-0.663;SOR=0.392;VarDP=91 GT:AD:DP:GQ:PL:SB 1:20,25:45:99:124,0:7,13,13,12 1/1:0,46:46:99:1430,137,0:0,0,19,27 +chrX 2665160 . GCCTT G 1958.97 . AC=3;AF=1.00;AN=3;AS_AltDP=48;AS_QD=33.28;DP=95;ExcessHet=0.0000;FS=0.000;MQ=59.79;QD=41.63;SOR=0.866;VarDP=48 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:1056,0:0,0,14,12 1/1:0,22:22:67:942,67,0:0,0,12,10 +chrX 2665273 . T TTC 3954.97 . AC=3;AF=1.00;AN=3;AS_AltDP=90;AS_QD=33.29;DP=93;ExcessHet=0.0000;FS=0.000;MQ=59.76;QD=44.38;SOR=1.828;VarDP=90 GT:AD:DP:GQ:PL:SB 1:0,46:46:99:2045,0:0,0,14,32 1/1:0,44:44:99:1949,132,0:0,0,13,31 +chrX 2666024 . A G 4366 . AC=3;AF=1.00;AN=3;AS_AltDP=136;AS_QD=32.09;BaseQRankSum=-0.52;DP=140;ExcessHet=0.0000;FS=3.172;MQ=60.00;MQRankSum=0;QD=32.09;ReadPosRankSum=1.637;SOR=0.365;VarDP=137 GT:AD:DP:GQ:PL:SB 1:1,71:72:99:2202,0:1,0,29,42 1/1:0,65:65:99:2194,195,0:0,0,36,29 +chrX 2667074 . C T 3669 . AC=3;AF=1.00;AN=3;AS_AltDP=109;AS_QD=33.94;DP=116;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.94;SOR=1.049;VarDP=109 GT:AD:DP:GQ:PL:SB 1:0,58:58:99:1956,0:0,0,28,30 1/1:0,51:51:99:1743,153,0:0,0,18,33 +chrX 2667938 . G A 3949 . AC=3;AF=1.00;AN=3;AS_AltDP=123;AS_QD=31.33;BaseQRankSum=3.679;DP=130;ExcessHet=0.0000;FS=4.727;MQ=60.00;MQRankSum=0;QD=31.33;ReadPosRankSum=1.146;SOR=0.515;VarDP=127 GT:AD:DP:GQ:PL:SB 1:2,71:73:99:2267,0:0,2,39,32 1/1:2,52:54:99:1712,128,0:1,1,28,24 +chrX 2668319 . C T 4098 . AC=3;AF=1.00;AN=3;AS_AltDP=126;AS_QD=32.50;BaseQRankSum=2.778;DP=130;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=32.50;ReadPosRankSum=0.852;SOR=0.328;VarDP=127 GT:AD:DP:GQ:PL:SB 1:0,68:68:99:2201,0:0,0,34,34 1/1:1,58:59:99:1927,167,0:1,0,36,22 +chrX 2668582 . G A 947 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=13.76;BaseQRankSum=0.115;DP=137;ExcessHet=0.0000;FS=1.976;MQ=60.00;MQRankSum=0;QD=13.76;ReadPosRankSum=1.53;SOR=0.993;VarDP=71 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,1607 0/1:35,36:71:99:.:977,0,928:16,19,14,22 +chrX 2668607 . C A 1093 . AC=1;AF=0.333;AN=3;AS_AltDP=42;AS_QD=15.18;BaseQRankSum=-1.214;DP=141;ExcessHet=0.0000;FS=0.888;MQ=59.78;MQRankSum=-0.846;QD=15.18;ReadPosRankSum=-0.469;SOR=0.862;VarDP=74 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,1607 0/1:32,42:74:99:.:1123,0,846:15,17,18,24 +chrX 2668621 . AAG A 1284.97 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=19.76;BaseQRankSum=-1.029;DP=140;ExcessHet=0.0000;FS=3.312;MQ=59.78;MQRankSum=0;QD=19.76;ReadPosRankSum=-0.347;SOR=0.697;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,1607 0/1:32,35:67:99:.:1324,0,1216:18,14,16,19 +chrX 2668676 . C T 875 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=13.51;BaseQRankSum=1.517;DP=134;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.51;ReadPosRankSum=-1.073;SOR=0.756;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,1607 0/1:34,33:67:99:.:905,0,874:18,16,18,15 +chrX 2669004 . G C 578 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=12.16;BaseQRankSum=-0.144;DP=116;ExcessHet=0.0000;FS=7.790;MQ=60.00;MQRankSum=0;QD=12.16;ReadPosRankSum=-0.962;SOR=1.463;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,1607 0/1:26,24:50:99:.:608,0,679:14,12,8,16 +chrX 2669213 . G C 701 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=14.33;BaseQRankSum=0.566;DP=117;ExcessHet=0.0000;FS=3.933;MQ=60.00;MQRankSum=0;QD=14.33;ReadPosRankSum=-0.358;SOR=1.179;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,1607 0/1:25,26:51:99:.:731,0,671:12,13,16,10 +chrX 2669459 . A C 657 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=12.05;BaseQRankSum=-1.821;DP=122;ExcessHet=0.0000;FS=1.007;MQ=60.00;MQRankSum=0;QD=12.05;ReadPosRankSum=-0.431;SOR=0.518;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,1607 0/1:29,28:57:99:.:687,0,782:16,13,14,14 +chrX 2670187 . T A 745 . AC=2;AF=0.667;AN=3;AS_AltDP=65;AS_QD=5.96;BaseQRankSum=-0.796;DP=135;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=5.96;ReadPosRankSum=0.807;SOR=0.635;VarDP=130 GT:AD:DP:GQ:PL:SB 1:34,41:75:99:166,0:17,17,21,20 0/1:31,24:55:99:609,0,862:18,13,13,11 +chrX 2670570 . CT C 109.97 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=7.84;BaseQRankSum=-0.525;DP=108;ExcessHet=0.0000;FS=11.563;MQ=59.30;MQRankSum=0;QD=7.84;ReadPosRankSum=-0.661;SOR=1.657;VarDP=19 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:70:22:60:0,22 0/1:8,11:19:82:.:149,0,82:6,2,3,8 +chrX 2670718 . G A 444 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=9.67;BaseQRankSum=0.044;DP=110;ExcessHet=0.0000;FS=1.117;MQ=60.00;MQRankSum=0;QD=9.67;ReadPosRankSum=2.453;SOR=0.687;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:70:22:60:0,22 0/1:30,19:49:99:.:474,0,805:16,14,9,10 +chrX 2670878 . T G 746 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=10.63;BaseQRankSum=-1.814;DP=133;ExcessHet=0.0000;FS=0.880;MQ=60.00;MQRankSum=0;QD=10.63;ReadPosRankSum=-1.12;SOR=0.568;VarDP=73 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:70:22:60:0,22 0/1:40,33:73:99:.:776,0,1071:22,18,17,16 +chrX 2671003 . G A 625 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=11.29;BaseQRankSum=-0.47;DP=120;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=11.29;ReadPosRankSum=-0.577;SOR=0.702;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:70:22:60:0,22 0/1:31,27:58:99:.:655,0,824:16,15,14,13 +chrX 2671103 . C A 1070 . AC=1;AF=0.333;AN=3;AS_AltDP=39;AS_QD=15.94;BaseQRankSum=1.877;DP=132;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=15.94;ReadPosRankSum=-1.453;SOR=0.594;VarDP=69 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:70:22:60:0,22 0/1:30,39:69:99:.:1100,0,701:17,13,21,18 +chrX 2671135 . G A 1218 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=17.83;BaseQRankSum=0.567;DP=132;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=17.83;ReadPosRankSum=0.345;SOR=0.588;VarDP=70 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:70:22:60:0,22 0/1:35,35:70:99:.:1248,0,865:21,14,20,15 +chrX 2671141 . G A 800 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=12.03;BaseQRankSum=1.066;DP=131;ExcessHet=0.0000;FS=0.949;MQ=60.00;MQRankSum=0;QD=12.03;ReadPosRankSum=-0.433;SOR=0.495;VarDP=69 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:70:22:60:0,22 0/1:37,32:69:99:.:830,0,1327:24,13,19,13 +chrX 2671165 . CA C 685.97 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=12.29;BaseQRankSum=-1.825;DP=127;ExcessHet=0.0000;FS=2.188;MQ=60.00;MQRankSum=0;QD=12.29;ReadPosRankSum=-0.379;SOR=1.071;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:70:22:60:0,22 0/1:30,29:59:99:.:725,0,749:15,15,17,12 +chrX 2671220 . G A 674 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=10.83;BaseQRankSum=0.596;DP=128;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=10.83;ReadPosRankSum=-0.3;SOR=0.806;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:70:22:60:0,22 0/1:38,27:65:99:.:704,0,1003:20,18,15,12 +chrX 2671231 . A G 680 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=10.76;BaseQRankSum=-2.928;DP=129;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=10.76;ReadPosRankSum=-1.662;SOR=0.734;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:70:22:60:0,22 0/1:36,30:66:99:.:710,0,1034:20,16,17,13 +chrX 2671246 . C A 761 . AC=2;AF=0.667;AN=3;AS_AltDP=64;AS_QD=5.95;BaseQRankSum=-0.095;DP=141;ExcessHet=0.0000;FS=3.101;MQ=60.00;MQRankSum=0;QD=5.95;ReadPosRankSum=-0.119;SOR=0.589;VarDP=133 GT:AD:DP:GQ:PL:SB 1:32,35:67:99:129,0:12,20,16,19 0/1:37,29:66:99:662,0,1001:19,18,17,12 +chrX 2671416 . A G 551 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=9.52;BaseQRankSum=1.17;DP=130;ExcessHet=0.0000;FS=5.480;MQ=60.00;MQRankSum=0;QD=9.52;ReadPosRankSum=-0.007;SOR=1.547;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:54:68:0,54 0/1:38,23:61:99:.:581,0,1055:18,20,7,16 +chrX 2671476 . A G 414 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=8.22;BaseQRankSum=-1.379;DP=124;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=8.22;ReadPosRankSum=0.251;SOR=0.693;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:54:68:0,54 0/1:34,20:54:99:.:444,0,956:17,17,10,10 +chrX 2671565 . C CTTTTT 598.97 . AC=2;AF=0.667;AN=3;AS_AltDP=36;AS_QD=8.51;BaseQRankSum=0.695;DP=96;ExcessHet=0.0000;FS=0.874;MQ=59.49;MQRankSum=0;QD=8.51;ReadPosRankSum=0.495;SOR=0.869;VarDP=75 GT:AD:DP:GQ:PL:SB 1:20,24:44:99:213,0:10,10,11,13 0/1:19,12:31:99:425,0,685:9,10,5,7 +chrX 2671665 . C T 593 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=12.71;BaseQRankSum=2.282;DP=125;ExcessHet=0.0000;FS=4.018;MQ=60.00;MQRankSum=0;QD=12.71;ReadPosRankSum=0.581;SOR=0.465;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:72:99:72:0,148 0/1:26,23:49:99:.:623,0,631:10,16,12,11 +chrX 2671724 . G A 565 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=10.82;BaseQRankSum=-1.761;DP=128;ExcessHet=0.0000;FS=2.268;MQ=60.00;MQRankSum=0;QD=10.82;ReadPosRankSum=-0.564;SOR=0.824;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:72:99:72:0,148 0/1:28,27:55:99:.:595,0,720:15,13,12,15 +chrX 2671793 . T C 1513 . AC=3;AF=1.00;AN=3;AS_AltDP=83;AS_QD=13.19;BaseQRankSum=-0.758;DP=121;ExcessHet=0.0000;FS=3.829;MQ=59.75;MQRankSum=-0.906;QD=13.19;ReadPosRankSum=-0.736;SOR=0.383;VarDP=117 GT:AD:DP:GQ:PL:SB 1:34,39:73:99:129,0:13,21,24,15 1/1:0,44:44:99:1414,132,0:0,0,16,28 +chrX 2672074 . C T 1725 . AC=3;AF=1.00;AN=3;AS_AltDP=89;AS_QD=13.60;BaseQRankSum=3.057;DP=138;ExcessHet=0.0000;FS=0.709;MQ=60.00;MQRankSum=0;QD=13.60;ReadPosRankSum=0.935;SOR=0.627;VarDP=129 GT:AD:DP:GQ:PL:SB 1:38,40:78:99:176,0:18,20,18,22 1/1:2,49:51:99:1579,119,0:1,1,27,22 +chrX 2672141 . A C 2869 . AC=3;AF=1.00;AN=3;AS_AltDP=97;AS_QD=22.65;BaseQRankSum=3.568;DP=131;ExcessHet=0.0000;FS=3.854;MQ=60.00;MQRankSum=0;QD=22.65;ReadPosRankSum=0.176;SOR=0.758;VarDP=128 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:29,42:71:99:.:.:575,0:.:16,13,16,26 1|1:2,55:57:82:0|1:2672141_A_C:2324,82,0:2672141:1,1,28,27 +chrX 2672148 . C T 2869 . AC=3;AF=1.00;AN=3;AS_AltDP=98;AS_QD=22.30;BaseQRankSum=2.955;DP=132;ExcessHet=0.0000;FS=3.788;MQ=60.00;MQRankSum=0;QD=22.30;ReadPosRankSum=0.446;SOR=0.639;VarDP=130 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:30,43:73:99:.:.:575,0:.:17,13,17,26 1|1:2,55:57:82:0|1:2672141_A_C:2324,82,0:2672141:1,1,29,26 +chrX 2672517 . G A 2428 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=27.09;DP=117;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.89;SOR=1.101;VarDP=56 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:61:30:60:.:.:0,30 1|1:0,56:56:99:.:0|1:2672517_G_A:2458,169,0:2672517:0,0,33,23 +chrX 2672533 . A G 2522 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=31.79;DP=120;ExcessHet=0.0000;FS=0.000;MQ=59.88;QD=43.25;SOR=0.871;VarDP=59 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:61:30:60:.:.:0,30 1|1:0,59:59:99:.:0|1:2672517_G_A:2552,178,0:2672517:0,0,32,27 +chrX 2672565 . A C 1933 . AC=3;AF=1.00;AN=3;AS_AltDP=94;AS_QD=15.70;BaseQRankSum=3.509;DP=128;ExcessHet=0.0000;FS=8.395;MQ=59.87;MQRankSum=1.572;QD=15.70;ReadPosRankSum=0.731;SOR=0.240;VarDP=125 GT:AD:DP:GQ:PL:SB 1:28,33:61:57:57,0:20,8,13,20 1/1:3,61:64:78:1906,78,0:1,2,35,26 +chrX 2673088 . G A 678 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=5.45;BaseQRankSum=0.816;DP=134;ExcessHet=0.0000;FS=5.396;MQ=60.00;MQRankSum=0;QD=5.45;ReadPosRankSum=0.348;SOR=0.369;VarDP=130 GT:AD:DP:GQ:PL:SB 1:37,36:73:26:26,0:13,24,19,17 0/1:31,26:57:99:682,0,836:13,18,11,15 +chrX 2673551 . A T 1482 . AC=2;AF=0.667;AN=3;AS_AltDP=76;AS_QD=11.37;BaseQRankSum=1.764;DP=136;ExcessHet=0.0000;FS=0.649;MQ=60.00;MQRankSum=0;QD=11.37;ReadPosRankSum=0.414;SOR=0.597;VarDP=133 GT:AD:DP:GQ:PL:SB 1:24,44:68:99:616,0:14,10,20,24 0/1:33,32:65:99:896,0,867:16,17,18,14 +chrX 2673847 . T A 581 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=5.36;BaseQRankSum=-0.411;DP=120;ExcessHet=0.0000;FS=1.478;MQ=60.00;MQRankSum=0;QD=5.36;ReadPosRankSum=1.549;SOR=0.846;VarDP=114 GT:AD:DP:GQ:PL:SB 1:28,31:59:7:7,0:16,12,16,15 0/1:32,23:55:99:604,0,917:14,18,13,10 +chrX 2674054 . CGATCCTGCCCTCCCTGTCATCTCGGT C 1124.97 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=20.07;BaseQRankSum=-0.369;DP=129;ExcessHet=0.0000;FS=3.698;MQ=60.00;MQRankSum=0;QD=20.07;ReadPosRankSum=-0.899;SOR=1.329;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:44:66:0,44 0/1:28,30:58:99:.:1164,0,1085:14,14,11,19 +chrX 2674149 . A ATT 704.97 . AC=2;AF=0.667;AN=3;AS_AltDP=42;AS_QD=10.19;BaseQRankSum=1.154;DP=89;ExcessHet=0.0000;FS=3.202;MQ=60.00;MQRankSum=0;QD=10.19;ReadPosRankSum=-1.035;SOR=0.555;VarDP=73 GT:AD:DP:GQ:PL:SB 1:16,22:38:99:153,0:6,10,14,8 0/1:15,20:35:99:591,0,421:7,8,8,12 +chrX 2674282 . GGTT G 1342.97 . AC=2;AF=0.667;AN=3;AS_AltDP=48;AS_QD=16.07;BaseQRankSum=1.212;DP=101;ExcessHet=0.0000;FS=4.139;MQ=59.95;MQRankSum=0;QD=16.07;ReadPosRankSum=1.3;SOR=0.385;VarDP=86 GT:AD:DP:GQ:PL:SB 1:14,23:37:99:404,0:10,4,14,9 0/1:24,25:49:99:978,0,920:15,9,13,12 +chrX 2674591 . C T 992 . AC=2;AF=0.667;AN=3;AS_AltDP=64;AS_QD=8.38;BaseQRankSum=1.481;DP=128;ExcessHet=0.0000;FS=4.501;MQ=59.80;MQRankSum=0.983;QD=8.38;ReadPosRankSum=1.31;SOR=0.387;VarDP=122 GT:AD:DP:GQ:PL:SB 1:29,38:67:99:345,0:11,18,16,22 0/1:29,26:55:99:677,0,795:9,20,12,14 +chrX 2674782 . C T 828 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=7.21;BaseQRankSum=1.61;DP=125;ExcessHet=0.0000;FS=6.989;MQ=59.76;MQRankSum=-0.902;QD=7.21;ReadPosRankSum=0.654;SOR=1.046;VarDP=119 GT:AD:DP:GQ:PL:SB 1:28,32:60:99:193,0:10,18,21,11 0/1:32,27:59:99:665,0,845:18,14,14,13 +chrX 2675057 . CAA C,CA,CAAAAA 216.97 . AC=1,1,0;AF=0.333,0.333,0.00;AN=3;AS_AltDP=14,4,5;AS_QD=8.78,4.15,0.00;BaseQRankSum=-0.66;DP=90;ExcessHet=0.0000;FS=34.427;MQ=57.86;MQRankSum=-0.167;QD=8.00;ReadPosRankSum=1.231;SOR=2.776;VarDP=32 GT:AD:DP:GQ:PL:SB 2:0,5,4,5:14:54:54,156,0,114:0,0,12,2 0/1:9,9,0,0:18:99:202,0,135,228,162,391,228,162,391,391:1,8,7,2 +chrX 2675430 . C G 718 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=6.50;BaseQRankSum=0.195;DP=121;ExcessHet=0.0000;FS=14.125;MQ=60.00;MQRankSum=0;QD=6.50;ReadPosRankSum=0.624;SOR=1.572;VarDP=115 GT:AD:DP:GQ:PL:SB 1:31,34:65:99:104,0:17,14,20,14 0/1:26,24:50:99:644,0,733:10,16,19,5 +chrX 2675578 . CTTTTT CTTTTTTTTT,C,CTTT 888.97 . AC=2,1,0;AF=0.667,0.333,0.00;AN=3;AS_AltDP=25,3,0;AS_QD=30.93,15.83,0.00;BaseQRankSum=1.273;DP=85;ExcessHet=0.0000;FS=2.696;MQ=58.39;MQRankSum=-0.541;QD=29.94;ReadPosRankSum=-0.385;SOR=0.223;VarDP=31 GT:AD:DP:GQ:PL:SB 1:2,16,0,0:18:99:511,0,603,603:0,2,6,10 1/2:1,9,3,0:13:62:417,62,78,322,0,459,471,150,510,1084:0,1,3,9 +chrX 2675712 . A G 737 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=7.45;BaseQRankSum=1.605;DP=108;ExcessHet=0.0000;FS=0.733;MQ=60.00;MQRankSum=0;QD=7.45;ReadPosRankSum=1.1;SOR=0.795;VarDP=103 GT:AD:DP:GQ:PL:SB 1:28,33:61:99:183,0:17,11,21,12 0/1:21,21:42:99:584,0,529:9,12,9,12 +chrX 2675970 . C A 1067 . AC=2;AF=0.667;AN=3;AS_AltDP=75;AS_QD=7.95;BaseQRankSum=-0.449;DP=144;ExcessHet=0.0000;FS=10.491;MQ=60.00;MQRankSum=0;QD=7.95;ReadPosRankSum=0.673;SOR=0.634;VarDP=138 GT:AD:DP:GQ:PL:SB 1:34,40:74:99:148,0:12,22,20,20 0/1:29,35:64:99:949,0,796:13,16,21,14 +chrX 2677018 . G A 109 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=2.04;BaseQRankSum=1.372;DP=134;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=2.04;ReadPosRankSum=-0.706;SOR=0.678;VarDP=68 GT:AD:DP:GQ:MIN_DP:PL:SB 1:33,35:68:99:.:139,0:14,19,15,20 0/0:.:64:81:64:0,81,1361 +chrX 2677142 . C CTT 174.97 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=4.12;BaseQRankSum=1.625;DP=126;ExcessHet=0.0000;FS=2.402;MQ=60.00;MQRankSum=0;QD=4.12;ReadPosRankSum=0.037;SOR=0.862;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 1:22,30:52:99:.:214,0:10,12,17,13 0/0:.:64:81:64:0,81,1361 +chrX 2678374 . T G 2221 . AC=1;AF=0.333;AN=3;AS_AltDP=59;AS_QD=32.90;DP=123;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=38.15;SOR=1.217;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,59:59:99:.:2251,0:0,0,23,36 0/0:.:64:81:64:0,81,1361 +chrX 2678378 . G A 39 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=1.15;BaseQRankSum=1.517;DP=126;ExcessHet=0.0000;FS=0.998;MQ=60.00;MQRankSum=0;QD=1.15;ReadPosRankSum=-0.71;SOR=0.979;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 1:30,30:60:69:.:69,0:14,16,12,18 0/0:.:64:81:64:0,81,1361 +chrX 2678516 . G A 1772 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=34.00;DP=117;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=34.00;SOR=0.808;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,202 1/1:0,53:53:99:.:1802,159,0:0,0,28,25 +chrX 2678681 . C G 1916 . AC=1;AF=0.333;AN=3;AS_AltDP=52;AS_QD=28.48;DP=113;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=37.42;SOR=0.770;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,52:52:99:.:1946,0:0,0,25,27 0/0:.:61:66:61:0,66,1463 +chrX 2679134 . T A 1875 . AC=1;AF=0.333;AN=3;AS_AltDP=58;AS_QD=32.84;DP=120;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.84;SOR=0.762;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,58:58:99:.:1905,0:0,0,28,30 0/0:.:61:66:61:0,66,1463 +chrX 2679450 . T TG 1834.97 . AC=1;AF=0.333;AN=3;AS_AltDP=53;AS_QD=31.30;DP=120;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=35.36;SOR=0.892;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,53:53:99:.:1874,0:0,0,29,24 0/0:.:61:66:61:0,66,1463 +chrX 2680356 . C A 615 . AC=1;AF=0.333;AN=3;AS_AltDP=40;AS_QD=10.75;BaseQRankSum=0.01;DP=123;ExcessHet=0.0000;FS=1.077;MQ=60.00;MQRankSum=0;QD=10.75;ReadPosRankSum=1.365;SOR=0.458;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 1:20,40:60:99:.:645,0:13,7,23,17 0/0:.:61:66:61:0,66,1463 +chrX 2680540 . A G 1874 . AC=1;AF=0.333;AN=3;AS_AltDP=59;AS_QD=32.27;DP=122;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.27;SOR=1.217;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,59:59:99:.:1904,0:0,0,36,23 0/0:.:61:66:61:0,66,1463 +chrX 2680603 . CATCT C 275.97 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=5.53;BaseQRankSum=-2.505;DP=122;ExcessHet=0.0000;FS=5.333;MQ=60.00;MQRankSum=0;QD=5.53;ReadPosRankSum=-0.108;SOR=0.986;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 1:25,32:57:99:.:315,0:11,14,19,13 0/0:.:61:66:61:0,66,1463 +chrX 2680624 . G A 302 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=4.88;BaseQRankSum=-0.32;DP=132;ExcessHet=0.0000;FS=6.542;MQ=60.00;MQRankSum=0;QD=4.88;ReadPosRankSum=1.184;SOR=1.049;VarDP=68 GT:AD:DP:GQ:MIN_DP:PL:SB 1:30,38:68:99:.:332,0:13,17,23,15 0/0:.:61:66:61:0,66,1463 +chrX 2681278 . G A 1567 . AC=1;AF=0.333;AN=3;AS_AltDP=50;AS_QD=31.94;DP=77;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.94;SOR=1.157;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,50:50:99:.:1597,0:0,0,30,20 0/0:.:28:28:26:0,28,741 +chrX 2681856 . CTT C 536.97 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=10.47;BaseQRankSum=0.229;DP=82;ExcessHet=0.0000;FS=2.354;MQ=60.00;MQRankSum=0;QD=10.47;ReadPosRankSum=0.234;SOR=0.610;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 1:21,34:55:99:.:576,0:12,9,16,18 0/0:.:28:28:26:0,28,741 +chrX 2682276 . T C 2973 . AC=1;AF=0.333;AN=3;AS_AltDP=67;AS_QD=29.84;DP=94;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.82;SOR=0.723;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,67:67:99:.:3003,0:0,0,33,34 0/0:.:28:28:26:0,28,741 +chrX 2682278 . G A 2973 . AC=1;AF=0.333;AN=3;AS_AltDP=67;AS_QD=30.32;DP=93;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.82;SOR=0.723;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,67:67:99:.:3003,0:0,0,33,34 0/0:.:28:28:26:0,28,741 +chrX 2682346 . A G 2609 . AC=1;AF=0.333;AN=3;AS_AltDP=81;AS_QD=32.58;DP=109;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.58;SOR=0.934;VarDP=81 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,81:81:99:.:2639,0:0,0,36,45 0/0:.:28:28:26:0,28,741 +chrX 2683892 . T C 266 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=8.46;BaseQRankSum=-0.702;DP=62;ExcessHet=0.0000;FS=1.348;MQ=56.85;MQRankSum=1.274;QD=8.46;ReadPosRankSum=0.051;SOR=0.771;VarDP=35 GT:AD:DP:GQ:MIN_DP:PL:SB 1:13,22:35:99:.:296,0:7,6,10,12 0/0:.:28:28:26:0,28,741 +chrX 2684319 . T C 70 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=1.79;BaseQRankSum=-1.896;DP=122;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=1.79;ReadPosRankSum=0.411;SOR=0.639;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 1:26,30:56:99:.:100,0:16,10,18,12 0/0:.:65:42:65:0,42,1052 +chrX 2684514 . T C 226 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=3.88;BaseQRankSum=-1.131;DP=134;ExcessHet=0.0000;FS=0.944;MQ=60.00;MQRankSum=0;QD=3.88;ReadPosRankSum=0.355;SOR=0.536;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 1:29,37:66:99:.:256,0:12,17,17,20 0/0:.:65:42:65:0,42,1052 +chrX 2684605 . T C 111 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=2.31;BaseQRankSum=-0.86;DP=130;ExcessHet=0.0000;FS=2.154;MQ=60.00;MQRankSum=0;QD=2.31;ReadPosRankSum=-0.369;SOR=0.534;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 1:28,33:61:99:.:141,0:12,16,17,16 0/0:.:65:42:65:0,42,1052 +chrX 2684790 . C CATT 1852.97 . AC=1;AF=0.333;AN=3;AS_AltDP=43;AS_QD=30.17;DP=123;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.00;SOR=1.312;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,43:43:99:.:1892,0:0,0,16,27 0/0:.:65:42:65:0,42,1052 +chrX 2684870 . G A 64 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=1.57;BaseQRankSum=-1.025;DP=127;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=1.57;ReadPosRankSum=1.608;SOR=0.770;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 1:28,32:60:94:.:94,0:17,11,20,12 0/0:.:65:42:65:0,42,1052 +chrX 2686275 . C T 160 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=3.73;BaseQRankSum=1.26;DP=122;ExcessHet=0.0000;FS=2.359;MQ=60.00;MQRankSum=0;QD=3.73;ReadPosRankSum=0.455;SOR=1.071;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 1:23,28:51:99:.:190,0:12,11,17,11 0/0:.:65:42:65:0,42,1052 +chrX 2686465 . T C 102 . AC=1;AF=0.333;AN=3;AS_AltDP=43;AS_QD=1.71;BaseQRankSum=-2.231;DP=147;ExcessHet=0.0000;FS=3.181;MQ=59.94;MQRankSum=-0.863;QD=1.71;ReadPosRankSum=-0.462;SOR=1.112;VarDP=77 GT:AD:DP:GQ:MIN_DP:PL:SB 1:34,43:77:99:.:132,0:14,20,14,29 0/0:.:65:42:65:0,42,1052 +chrX 2688381 . C CT 921.97 . AC=2;AF=0.667;AN=3;AS_AltDP=42;AS_QD=22.88;DP=129;ExcessHet=0.0000;FS=0.000;MQ=58.53;QD=22.88;SOR=1.556;VarDP=42 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:73:75:73:.:.:0,75 1|1:0,42:42:99:.:0|1:2688381_C_CT:961,125,0:2688381:0,0,28,14 +chrX 2689243 . G C 2480 . AC=2;AF=0.667;AN=3;AS_AltDP=82;AS_QD=22.21;BaseQRankSum=0.934;DP=115;ExcessHet=0.0000;FS=0.801;MQ=60.00;MQRankSum=0;QD=22.21;ReadPosRankSum=0.018;SOR=0.859;VarDP=113 GT:AD:DP:GQ:PL:SB 1:0,59:59:99:1902,0:0,0,23,36 0/1:31,23:54:99:608,0,825:14,17,11,12 +chrX 2689712 . C CT 1527.97 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=28.49;DP=126;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=28.49;SOR=1.371;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,1628 1/1:0,55:55:99:.:1567,165,0:0,0,35,20 +chrX 2690094 . G A 2940 . AC=2;AF=0.667;AN=3;AS_AltDP=94;AS_QD=24.34;BaseQRankSum=1.703;DP=125;ExcessHet=0.0000;FS=2.829;MQ=60.00;MQRankSum=0;QD=24.34;ReadPosRankSum=-2.146;SOR=1.029;VarDP=122 GT:AD:DP:GQ:PL:SB 1:0,58:58:99:1921,0:0,0,20,38 0/1:28,36:64:99:1049,0,738:14,14,20,16 +chrX 2690784 . A C 206 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=5.62;BaseQRankSum=-2.781;DP=57;ExcessHet=0.0000;FS=1.203;MQ=59.82;MQRankSum=-0.735;QD=5.62;ReadPosRankSum=1.399;SOR=0.495;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 1:16,26:42:99:.:236,0:9,7,13,13 0/0:.:16:20:15:0,20,411 +chrX 2690851 . T G 892 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=31.79;DP=88;ExcessHet=0.0000;FS=0.000;MQ=59.55;QD=31.79;SOR=1.255;VarDP=29 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,29:29:99:.:922,0:0,0,18,11 0/0:.:59:52:59:0,52,744 +chrX 2690939 . G C 85 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=2.61;BaseQRankSum=1.28;DP=105;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=2.61;ReadPosRankSum=-1.258;SOR=0.672;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 1:21,23:44:99:.:115,0:9,12,10,13 0/0:.:59:52:59:0,52,744 +chrX 2691154 . G A 115 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=2.90;BaseQRankSum=0.258;DP=114;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=2.90;ReadPosRankSum=0.136;SOR=0.806;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 1:23,27:50:99:.:145,0:13,10,16,11 0/0:.:59:52:59:0,52,744 +chrX 2691192 . C CCGGGG 1266.97 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=19.79;BaseQRankSum=-0.942;DP=144;ExcessHet=0.0000;FS=2.067;MQ=60.00;MQRankSum=0;QD=19.79;ReadPosRankSum=-1.328;SOR=1.085;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,1771 0/1:32,34:66:99:.:1306,0,1231:16,16,20,14 +chrX 2691262 . C T 371 . AC=1;AF=0.333;AN=3;AS_AltDP=45;AS_QD=5.28;BaseQRankSum=-1.255;DP=159;ExcessHet=0.0000;FS=6.287;MQ=60.00;MQRankSum=0;QD=5.28;ReadPosRankSum=-0.73;SOR=1.426;VarDP=76 GT:AD:DP:GQ:MIN_DP:PL:SB 1:31,45:76:99:.:401,0:17,14,31,14 0/0:.:80:99:80:0,120,1800 +chrX 2691502 . G A 225 . AC=1;AF=0.333;AN=3;AS_AltDP=47;AS_QD=3.04;BaseQRankSum=-2.244;DP=165;ExcessHet=0.0000;FS=7.206;MQ=60.00;MQRankSum=0;QD=3.04;ReadPosRankSum=-0.73;SOR=0.512;VarDP=84 GT:AD:DP:GQ:MIN_DP:PL:SB 1:37,47:84:99:.:255,0:14,23,25,22 0/0:.:80:99:80:0,120,1800 +chrX 2691676 . G T 918 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=12.15;BaseQRankSum=0.688;DP=148;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=12.15;ReadPosRankSum=0.206;SOR=0.606;VarDP=78 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:85:66:0,85 0/1:42,36:78:99:.:948,0,1125:20,22,18,18 +chrX 2691708 . T C 2458 . AC=2;AF=0.667;AN=3;AS_AltDP=73;AS_QD=34.08;DP=143;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=34.08;SOR=0.836;VarDP=73 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:85:66:0,85 1/1:0,73:73:99:.:2488,220,0:0,0,39,34 +chrX 2691942 . T C 3121 . AC=2;AF=0.667;AN=3;AS_AltDP=106;AS_QD=23.34;BaseQRankSum=-0.878;DP=141;ExcessHet=0.0000;FS=8.427;MQ=60.00;MQRankSum=0;QD=23.34;ReadPosRankSum=-1.423;SOR=0.849;VarDP=135 GT:AD:DP:GQ:PL:SB 1:0,61:61:99:1939,0:0,0,38,23 0/1:29,45:74:99:1212,0,732:12,17,23,22 +chrX 2692453 . T G 1083 . AC=1;AF=0.333;AN=3;AS_AltDP=40;AS_QD=18.86;BaseQRankSum=-2.359;DP=107;ExcessHet=0.0000;FS=2.413;MQ=60.00;MQRankSum=0;QD=18.86;ReadPosRankSum=-0.503;SOR=1.158;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:52:24:45:0,24 0/1:19,40:59:99:.:1113,0,483:9,10,15,25 +chrX 2693204 . A G 68 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=2.18;BaseQRankSum=-1.356;DP=79;ExcessHet=0.0000;FS=6.176;MQ=60.00;MQRankSum=0;QD=2.18;ReadPosRankSum=0.388;SOR=1.609;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 1:20,25:45:98:.:98,0:10,10,17,8 0/0:.:35:53:34:0,53,1003 +chrX 2694519 . AG A 2590.97 . AC=2;AF=0.667;AN=3;AS_AltDP=79;AS_QD=23.91;BaseQRankSum=-0.852;DP=114;ExcessHet=0.0000;FS=1.728;MQ=59.96;MQRankSum=0;QD=23.91;ReadPosRankSum=0.076;SOR=0.488;VarDP=110 GT:AD:DP:GQ:PL:SB 1:0,51:51:99:1812,0:0,0,28,23 0/1:31,28:59:99:818,0,926:18,13,13,15 +chrX 2694753 . A C 1592 . AC=1;AF=0.333;AN=3;AS_AltDP=51;AS_QD=31.80;DP=117;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.80;SOR=1.436;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,51:51:99:.:1622,0:0,0,18,33 0/0:.:63:99:63:0,120,1800 +chrX 2694756 . G GA 465.97 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=11.48;BaseQRankSum=0.935;DP=111;ExcessHet=0.0000;FS=14.898;MQ=60.00;MQRankSum=0;QD=11.48;ReadPosRankSum=-0.389;SOR=1.684;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:55:99:55:0,1463 0/1:20,24:44:99:.:505,0,410:7,13,17,7 +chrX 2695238 . C T 1579 . AC=1;AF=0.333;AN=3;AS_AltDP=50;AS_QD=31.55;BaseQRankSum=-0.411;DP=114;ExcessHet=0.0000;FS=4.065;MQ=60.00;MQRankSum=0;QD=31.55;ReadPosRankSum=0.238;SOR=1.033;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,50:51:99:.:1609,0:0,1,31,19 0/0:.:61:98:61:0,98,1235 +chrX 2695535 . T C 3344 . AC=3;AF=1.00;AN=3;AS_AltDP=110;AS_QD=30.67;DP=113;ExcessHet=0.0000;FS=0.000;MQ=59.92;QD=30.67;SOR=0.976;VarDP=110 GT:AD:DP:GQ:PL:SB 1:0,66:66:99:2027,0:0,0,28,38 1/1:0,44:44:99:1347,131,0:0,0,20,24 +chrX 2695637 . C CTT 1454.97 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=29.32;DP=95;ExcessHet=0.0000;FS=0.000;MQ=59.64;QD=40.38;SOR=1.121;VarDP=37 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,37:37:99:.:1494,0:0,0,22,15 0/0:.:49:38:48:0,38,1288 +chrX 2695659 . T A 2713 . AC=3;AF=1.00;AN=3;AS_AltDP=79;AS_QD=34.72;DP=89;ExcessHet=0.0000;FS=0.000;MQ=59.07;QD=34.72;SOR=0.770;VarDP=79 GT:AD:DP:GQ:PL:SB 1:0,39:39:99:1514,0:0,0,22,17 1/1:0,40:40:99:1229,119,0:0,0,19,21 +chrX 2696041 . A G 3657 . AC=3;AF=1.00;AN=3;AS_AltDP=116;AS_QD=31.78;DP=116;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.78;SOR=0.693;VarDP=116 GT:AD:DP:GQ:PL:SB 1:0,60:60:99:1847,0:0,0,28,32 1/1:0,56:56:99:1840,168,0:0,0,30,26 +chrX 2696071 . G A 1895 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=31.56;DP=120;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.56;SOR=0.941;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:58:99:58:0,1548 1/1:0,61:61:99:.:1925,182,0:0,0,34,27 +chrX 2696178 . A G 3539 . AC=3;AF=1.00;AN=3;AS_AltDP=110;AS_QD=32.45;DP=117;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.45;SOR=1.118;VarDP=110 GT:AD:DP:GQ:PL:SB 1:0,50:50:99:1597,0:0,0,29,21 1/1:0,60:60:99:1972,180,0:0,0,36,24 +chrX 2696226 . T C 1661 . AC=1;AF=0.333;AN=3;AS_AltDP=52;AS_QD=32.52;DP=124;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.52;SOR=1.036;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,52:52:99:.:1691,0:0,0,30,22 0/0:.:69:99:69:0,120,1800 +chrX 2696439 . T C 3851 . AC=3;AF=1.00;AN=3;AS_AltDP=116;AS_QD=33.17;BaseQRankSum=-0.182;DP=119;ExcessHet=0.0000;FS=3.278;MQ=59.96;MQRankSum=0;QD=33.17;ReadPosRankSum=-1.42;SOR=0.446;VarDP=117 GT:AD:DP:GQ:PL:SB 1:0,45:45:99:1505,0:0,0,27,18 1/1:1,71:72:99:2376,182,0:0,1,35,36 +chrX 2697338 . C T 1944 . AC=1;AF=0.333;AN=3;AS_AltDP=59;AS_QD=33.46;DP=124;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.46;SOR=1.217;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,59:59:99:.:1974,0:0,0,23,36 0/0:.:62:96:62:0,96,1301 +chrX 2697475 . T C 4787 . AC=3;AF=1.00;AN=3;AS_AltDP=124;AS_QD=31.56;DP=128;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=38.85;SOR=0.828;VarDP=124 GT:AD:DP:GQ:PL:SB 1:0,64:64:99:2858,0:0,0,32,32 1/1:0,60:60:99:1959,180,0:0,0,34,26 +chrX 2697482 . A G 2854 . AC=1;AF=0.333;AN=3;AS_AltDP=65;AS_QD=31.64;DP=129;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.37;SOR=0.723;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,65:65:99:.:2884,0:0,0,32,33 0/0:.:63:99:63:0,120,1800 +chrX 2697555 . C A 2033 . AC=2;AF=0.667;AN=3;AS_AltDP=64;AS_QD=31.74;BaseQRankSum=1.996;DP=127;ExcessHet=0.0000;FS=3.815;MQ=60.00;MQRankSum=0;QD=31.74;ReadPosRankSum=-1.519;SOR=0.849;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,1441 1/1:1,64:65:99:.:2063,170,0:1,0,26,38 +chrX 2697946 . T C 3081 . AC=3;AF=1.00;AN=3;AS_AltDP=95;AS_QD=32.75;DP=100;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.75;SOR=0.848;VarDP=95 GT:AD:DP:GQ:PL:SB 1:0,48:48:99:1598,0:0,0,27,21 1/1:0,47:47:99:1513,141,0:0,0,24,23 +chrX 2698739 . C T 2254 . AC=2;AF=0.667;AN=3;AS_AltDP=68;AS_QD=33.59;DP=126;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.59;SOR=0.752;VarDP=68 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:58:99:58:0,1239 1/1:0,68:68:99:.:2284,204,0:0,0,35,33 +chrX 2698851 . A G 1682 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=31.70;DP=113;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.70;SOR=0.846;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:58:99:58:0,1239 1/1:0,54:54:99:.:1712,162,0:0,0,25,29 +chrX 2699362 . A G 3086 . AC=3;AF=1.00;AN=3;AS_AltDP=100;AS_QD=31.16;DP=104;ExcessHet=0.0000;FS=0.000;MQ=59.81;QD=31.16;SOR=1.059;VarDP=100 GT:AD:DP:GQ:PL:SB 1:0,51:51:99:1645,0:0,0,25,26 1/1:0,49:49:99:1471,146,0:0,0,17,32 +chrX 2701436 . T C 2200 . AC=2;AF=0.667;AN=3;AS_AltDP=70;AS_QD=31.86;DP=134;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.86;SOR=0.693;VarDP=70 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,1091 1/1:0,70:70:99:.:2230,210,0:0,0,35,35 +chrX 2701585 . GCCTC G 3189.97 . AC=2;AF=0.667;AN=3;AS_AltDP=72;AS_QD=29.62;DP=139;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.85;SOR=0.869;VarDP=72 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:99:62:.:.:0,1091 1|1:0,72:72:99:.:0|1:2701585_GCCTC_G:3229,217,0:2701585:0,0,33,39 +chrX 2701590 . T TG 3189.97 . AC=2;AF=0.667;AN=3;AS_AltDP=72;AS_QD=27.77;DP=137;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.85;SOR=0.869;VarDP=72 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:99:62:.:.:0,1091 1|1:0,72:72:99:.:0|1:2701585_GCCTC_G:3229,217,0:2701585:0,0,33,39 +chrX 2701613 . T G 2212 . AC=2;AF=0.667;AN=3;AS_AltDP=70;AS_QD=31.58;BaseQRankSum=2.348;DP=138;ExcessHet=0.0000;FS=3.599;MQ=60.00;MQRankSum=0;QD=31.58;ReadPosRankSum=-0.244;SOR=0.693;VarDP=71 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,1091 1/1:1,70:71:99:.:2242,203,0:1,0,30,40 +chrX 2703079 . A G 1979 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=31.89;DP=126;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.89;SOR=0.859;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,1091 1/1:0,63:63:99:.:2009,188,0:0,0,29,34 +chrX 2703417 . G A 1340 . AC=2;AF=0.667;AN=3;AS_AltDP=40;AS_QD=34.25;DP=105;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=34.25;SOR=1.981;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,1091 1/1:0,40:40:99:.:1370,120,0:0,0,11,29 +chrX 2703605 . AGTGTGT A,AGTGTGTGT 2304.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=45,19;AS_QD=33.02,10.68;BaseQRankSum=-0.896;DP=109;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=29.67;ReadPosRankSum=-0.146;SOR=0.697;VarDP=79 GT:AD:DP:GQ:PL:SB 1:1,45,0:46:99:1981,0,2004:0,1,26,19 0/2:14,0,19:33:99:363,405,718,0,313,257:8,6,8,11 +chrX 2704041 . T C 1488 . AC=2;AF=0.667;AN=3;AS_AltDP=50;AS_QD=29.76;BaseQRankSum=-0.662;DP=117;ExcessHet=0.0000;FS=3.458;MQ=60.00;MQRankSum=0;QD=29.76;ReadPosRankSum=-0.646;SOR=0.610;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,1473 1/1:1,50:51:99:.:1518,118,0:1,0,22,28 +chrX 2704219 . G A 1637 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=32.69;DP=115;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.69;SOR=0.732;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,1473 1/1:0,51:51:99:.:1667,153,0:0,0,26,25 +chrX 2704349 . C T 240 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=4.43;BaseQRankSum=0.848;DP=124;ExcessHet=0.0000;FS=2.175;MQ=60.00;MQRankSum=0;QD=4.43;ReadPosRankSum=0.617;SOR=0.404;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 1:27,34:61:99:.:270,0:11,16,17,17 0/0:.:63:99:63:0,107,1800 +chrX 2704606 . C T 2186 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=23.96;DP=116;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=42.62;SOR=1.136;VarDP=52 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:99:62:.:.:0,1271 1|1:0,52:52:99:.:0|1:2704606_C_T:2216,156,0:2704606:0,0,21,31 +chrX 2704624 . T G 2141 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=25.69;DP=115;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=42.57;SOR=1.094;VarDP=51 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:62:99:62:.:.:0,1271 1|1:0,51:51:99:.:0|1:2704606_C_T:2171,153,0:2704606:0,0,21,30 +chrX 2705002 . A G 2267 . AC=2;AF=0.667;AN=3;AS_AltDP=72;AS_QD=31.90;DP=134;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.90;SOR=1.002;VarDP=72 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,1271 1/1:0,72:72:99:.:2297,216,0:0,0,41,31 +chrX 2705504 . C T 2091 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=32.63;BaseQRankSum=4.486;DP=130;ExcessHet=0.0000;FS=2.994;MQ=60.00;MQRankSum=0;QD=32.63;ReadPosRankSum=0.57;SOR=0.158;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,1271 1/1:2,63:65:99:.:2121,176,0:2,0,35,28 +chrX 2706063 . G A,GAA 3398 . AC=0,3;AF=0.00,1.00;AN=3;AS_AltDP=4,95;AS_QD=31.70,30.24;DP=116;ExcessHet=0.0000;FS=0.000;MQ=59.65;QD=34.63;SOR=0.797;VarDP=99 GT:AD:DP:GQ:PL:SB 2:0,4,45:49:99:1736,1579,0:0,0,25,24 2/2:0,0,50:50:99:1692,1692,1692,150,150,0:0,0,22,28 +chrX 2706145 . T G 3107 . AC=3;AF=1.00;AN=3;AS_AltDP=98;AS_QD=32.01;DP=100;ExcessHet=0.0000;FS=0.000;MQ=59.24;QD=32.01;SOR=0.963;VarDP=98 GT:AD:DP:GQ:PL:SB 1:0,55:55:99:1775,0:0,0,32,23 1/1:0,43:43:99:1362,128,0:0,0,23,20 +chrX 2706354 . T C 5738 . AC=3;AF=1.00;AN=3;AS_AltDP=134;AS_QD=26.34;DP=137;ExcessHet=0.0000;FS=0.000;MQ=59.97;QD=43.04;SOR=1.284;VarDP=134 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,71:71:99:.:.:3071,0:.:0,0,22,49 1|1:0,63:63:99:0|1:2706354_T_C:2697,190,0:2706354:0,0,29,34 +chrX 2706368 . G A 5987 . AC=3;AF=1.00;AN=3;AS_AltDP=142;AS_QD=30.71;DP=147;ExcessHet=0.0000;FS=0.000;MQ=59.97;QD=42.37;SOR=0.842;VarDP=142 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,76:76:99:.:.:3235,0:.:0,0,30,46 1|1:0,66:66:99:0|1:2706354_T_C:2782,199,0:2706354:0,0,36,30 +chrX 2706426 . A G 4467 . AC=3;AF=1.00;AN=3;AS_AltDP=145;AS_QD=30.80;BaseQRankSum=-0.566;DP=155;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=30.80;ReadPosRankSum=0.578;SOR=0.335;VarDP=146 GT:AD:DP:GQ:PL:SB 1:1,71:72:99:2227,0:1,0,35,36 1/1:0,74:74:99:2270,221,0:0,0,46,28 +chrX 2706483 . C T 2209 . AC=1;AF=0.333;AN=3;AS_AltDP=68;AS_QD=32.45;BaseQRankSum=-0.344;DP=138;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=32.45;ReadPosRankSum=-1.231;SOR=0.302;VarDP=69 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,68:69:99:.:2239,0:1,0,37,31 0/0:.:65:71:65:0,71,1491 +chrX 2707329 . C CAAAAG 2049.97 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=25.63;DP=121;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.45;SOR=1.022;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:50:99:50:0,109 1/1:0,47:47:99:.:2089,140,0:0,0,27,20 +chrX 2707349 . G GAA,GAAAAGAA,GAAAAGAAAAGAA 120.97 . AC=0,1,0;AF=0.00,0.333,0.00;AN=3;AS_AltDP=0,20,0;AS_QD=0.00,4.21,0.00;BaseQRankSum=-1.952;DP=114;ExcessHet=0.0000;FS=6.784;MQ=60.00;MQRankSum=0;QD=4.21;ReadPosRankSum=2.135;SOR=0.548;VarDP=38 GT:AD:DP:GQ:MIN_DP:PL:SB 2:18,0,20,0:38:99:.:160,1082,0,808:12,6,9,11 0/0:.:61:99:61:0,120,1800,120,1800,1800,120,1800,1800,1800 +chrX 2707402 . C A 4079 . AC=3;AF=1.00;AN=3;AS_AltDP=126;AS_QD=32.61;DP=133;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.61;SOR=0.899;VarDP=126 GT:AD:DP:GQ:PL:SB 1:0,60:60:99:1937,0:0,0,29,31 1/1:0,66:66:99:2172,198,0:0,0,40,26 +chrX 2708121 . T C 3477 . AC=3;AF=1.00;AN=3;AS_AltDP=107;AS_QD=32.47;BaseQRankSum=-0.391;DP=113;ExcessHet=0.0000;FS=0.000;MQ=59.97;MQRankSum=0;QD=32.47;ReadPosRankSum=-1.589;SOR=0.253;VarDP=108 GT:AD:DP:GQ:PL:SB 1:0,60:60:99:2006,0:0,0,31,29 1/1:1,47:48:99:1501,109,0:0,1,23,24 +chrX 2708661 . A G 3791 . AC=3;AF=1.00;AN=3;AS_AltDP=116;AS_QD=32.66;BaseQRankSum=-0.37;DP=119;ExcessHet=0.0000;FS=3.522;MQ=60.00;MQRankSum=0;QD=32.66;ReadPosRankSum=-0.483;SOR=0.621;VarDP=117 GT:AD:DP:GQ:PL:SB 1:0,56:56:99:1861,0:0,0,32,24 1/1:1,60:61:99:1960,149,0:0,1,33,27 +chrX 2709203 . A ACATGCATGCACACTCATGCCATGCATATATG 1626.97 . AC=2;AF=0.667;AN=3;AS_AltDP=50;AS_QD=32.04;BaseQRankSum=-0.82;DP=152;ExcessHet=0.0000;FS=3.096;MQ=60.00;MQRankSum=0;QD=32.04;ReadPosRankSum=-0.956;SOR=0.245;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:60:99:60:0,1405 1/1:2,50:52:99:.:1666,128,0:2,0,24,26 +chrX 2709310 . GCA G 2472.97 . AC=1;AF=0.333;AN=3;AS_AltDP=56;AS_QD=31.70;DP=135;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.86;SOR=0.841;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,56:56:99:.:2512,0:0,0,30,26 0/0:.:82:25:79:0,25,1800 +chrX 2709663 . T C 4506 . AC=3;AF=1.00;AN=3;AS_AltDP=138;AS_QD=32.87;DP=145;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.87;SOR=0.846;VarDP=138 GT:AD:DP:GQ:PL:SB 1:0,69:69:99:2258,0:0,0,32,37 1/1:0,69:69:99:2278,207,0:0,0,32,37 +chrX 2709697 . A AACATAGACACACACATGCATGT 2222.97 . AC=1;AF=0.333;AN=3;AS_AltDP=55;AS_QD=27.89;DP=134;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=41.13;SOR=0.804;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,55:55:99:.:2262,0:0,0,29,26 0/0:.:61:90:61:0,90,1623 +chrX 2709788 . C G 2103 . AC=1;AF=0.333;AN=3;AS_AltDP=68;AS_QD=31.37;DP=131;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.37;SOR=1.263;VarDP=68 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,68:68:99:.:2133,0:0,0,42,26 0/0:.:61:90:61:0,90,1623 +chrX 2710160 . A G 1915 . AC=1;AF=0.333;AN=3;AS_AltDP=59;AS_QD=32.97;DP=122;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.97;SOR=0.950;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,59:59:99:.:1945,0:0,0,33,26 0/0:.:61:90:61:0,90,1623 +chrX 2710175 . T TC 3820.97 . AC=3;AF=1.00;AN=3;AS_AltDP=104;AS_QD=31.94;DP=110;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=37.12;SOR=0.772;VarDP=104 GT:AD:DP:GQ:PL:SB 1:0,54:54:99:1994,0:0,0,31,23 1/1:0,50:50:99:1866,150,0:0,0,23,27 +chrX 2710281 . A G 38 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=1.62;BaseQRankSum=0.102;DP=90;ExcessHet=0.0000;FS=6.740;MQ=60.00;MQRankSum=0;QD=1.62;ReadPosRankSum=-1.335;SOR=1.546;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 1:20,22:42:68:.:68,0:11,9,7,15 0/0:.:48:66:46:0,66,1155 +chrX 2710375 . A C 1978 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=31.87;DP=125;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.87;SOR=0.724;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,1305 1/1:0,63:63:99:.:2008,188,0:0,0,31,32 +chrX 2710438 . G T 1934 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=31.68;DP=128;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.68;SOR=0.976;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,1305 1/1:0,62:62:99:.:1964,185,0:0,0,35,27 +chrX 2710514 . G GTTTT 2995.97 . AC=1;AF=0.333;AN=3;AS_AltDP=69;AS_QD=29.14;DP=120;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.99;SOR=0.781;VarDP=69 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,69:69:99:.:3035,0:0,0,36,33 0/0:.:53:32:47:0,32,1285 +chrX 2710867 . C CT 1211.97 . AC=3;AF=1.00;AN=3;AS_AltDP=61;AS_QD=20.51;DP=91;ExcessHet=0.0000;FS=0.000;MQ=59.01;QD=20.51;SOR=0.865;VarDP=61 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,27:27:99:.:.:495,0:.:0,0,14,13 1|1:0,34:34:99:0|1:2710867_C_CT:756,100,0:2710867:0,0,19,15 +chrX 2710950 . A G 1254 . AC=1;AF=0.333;AN=3;AS_AltDP=42;AS_QD=30.57;DP=73;ExcessHet=0.0000;FS=0.000;MQ=59.78;QD=30.57;SOR=0.693;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,42:42:99:.:1284,0:0,0,21,21 0/0:.:45:26:30:0,26,814 +chrX 2711037 . A G 1419 . AC=1;AF=0.333;AN=3;AS_AltDP=45;AS_QD=31.50;BaseQRankSum=1.95;DP=81;ExcessHet=0.0000;FS=0.000;MQ=59.91;MQRankSum=0;QD=31.50;ReadPosRankSum=-1.206;SOR=0.324;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,45:46:99:.:1449,0:1,0,25,20 0/0:.:45:26:30:0,26,814 +chrX 2711411 . AT A 1665.97 . AC=1;AF=0.333;AN=3;AS_AltDP=48;AS_QD=34.80;BaseQRankSum=0;DP=83;ExcessHet=0.0000;FS=4.349;MQ=60.00;MQRankSum=0;QD=34.80;ReadPosRankSum=0.071;SOR=1.227;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,48:49:99:.:1705,0:0,1,31,17 0/0:.:45:26:30:0,26,814 +chrX 2712340 . G A 1945 . AC=1;AF=0.333;AN=3;AS_AltDP=59;AS_QD=33.47;DP=92;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.47;SOR=1.034;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,59:59:99:.:1975,0:0,0,25,34 0/0:.:45:26:30:0,26,814 +chrX 2712422 . GA G 1274.97 . AC=2;AF=0.667;AN=3;AS_AltDP=44;AS_QD=29.20;BaseQRankSum=-0.368;DP=127;ExcessHet=0.0000;FS=3.522;MQ=60.00;MQRankSum=0;QD=29.20;ReadPosRankSum=1.733;SOR=0.663;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:77:99:77:0,1800 1/1:1,44:45:99:.:1314,105,0:1,0,19,25 +chrX 2712480 . G A 1568 . AC=2;AF=0.667;AN=3;AS_AltDP=50;AS_QD=31.33;BaseQRankSum=-0.411;DP=133;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=31.33;ReadPosRankSum=-1.121;SOR=0.435;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:77:99:77:0,1800 1/1:1,50:51:99:.:1598,118,0:1,0,30,20 +chrX 2712579 . A G 3784 . AC=3;AF=1.00;AN=3;AS_AltDP=121;AS_QD=31.52;DP=123;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.52;SOR=0.743;VarDP=121 GT:AD:DP:GQ:PL:SB 1:0,69:69:99:2178,0:0,0,32,37 1/1:0,52:52:99:1636,155,0:0,0,30,22 +chrX 2712994 . A G 2153 . AC=1;AF=0.333;AN=3;AS_AltDP=69;AS_QD=31.64;DP=130;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.64;SOR=0.844;VarDP=69 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,69:69:99:.:2183,0:0,0,32,37 0/0:.:59:92:59:0,92,1325 +chrX 2713131 . TACAC T 2754.97 . AC=1;AF=0.333;AN=3;AS_AltDP=64;AS_QD=30.85;DP=127;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.66;SOR=1.214;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,64:64:99:.:2794,0:0,0,39,25 0/0:.:59:92:59:0,92,1325 +chrX 2713315 . AAC A 1816.97 . AC=2;AF=0.667;AN=3;AS_AltDP=43;AS_QD=28.55;DP=121;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.16;SOR=0.836;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:72:99:72:0,1761 1/1:0,43:43:99:.:1856,130,0:0,0,23,20 +chrX 2713400 . CACAT C 2571.97 . AC=1;AF=0.333;AN=3;AS_AltDP=58;AS_QD=31.03;DP=120;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=45.02;SOR=0.914;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,58:58:99:.:2611,0:0,0,26,32 0/0:.:57:66:57:0,66,1417 +chrX 2713459 . T C 2132 . AC=1;AF=0.333;AN=3;AS_AltDP=65;AS_QD=33.26;DP=124;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.26;SOR=0.925;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,65:65:99:.:2162,0:0,0,36,29 0/0:.:57:66:57:0,66,1417 +chrX 2714148 . A G 2247 . AC=1;AF=0.333;AN=3;AS_AltDP=71;AS_QD=32.07;DP=129;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.07;SOR=0.721;VarDP=71 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,71:71:99:.:2277,0:0,0,35,36 0/0:.:57:66:57:0,66,1417 +chrX 2714231 . A T 2198 . AC=1;AF=0.333;AN=3;AS_AltDP=68;AS_QD=32.76;DP=128;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.76;SOR=0.814;VarDP=68 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,68:68:99:.:2228,0:0,0,32,36 0/0:.:57:66:57:0,66,1417 +chrX 2714441 . C T 1851 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=33.00;DP=121;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.00;SOR=0.960;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,1459 1/1:0,57:57:99:.:1881,171,0:0,0,25,32 +chrX 2714781 . G A 2065 . AC=1;AF=0.333;AN=3;AS_AltDP=62;AS_QD=33.79;DP=118;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.79;SOR=0.693;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,62:62:99:.:2095,0:0,0,31,31 0/0:.:53:79:53:0,79,1049 +chrX 2715210 . C CT 2526.97 . AC=2;AF=0.667;AN=3;AS_AltDP=70;AS_QD=29.42;BaseQRankSum=-0.437;DP=139;ExcessHet=0.0000;FS=4.363;MQ=60.00;MQRankSum=0;QD=36.14;ReadPosRankSum=-0.073;SOR=1.218;VarDP=71 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,1575 1/1:1,70:71:99:.:2566,176,0:0,1,45,25 +chrX 2715253 . G A 1900 . AC=1;AF=0.333;AN=3;AS_AltDP=59;AS_QD=32.71;DP=106;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.71;SOR=0.950;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,59:59:99:.:1930,0:0,0,33,26 0/0:.:60:27:45:0,27,1240 +chrX 2715433 . A G 2168 . AC=1;AF=0.333;AN=3;AS_AltDP=67;AS_QD=32.81;DP=114;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.81;SOR=0.849;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,67:67:99:.:2198,0:0,0,31,36 0/0:.:60:27:45:0,27,1240 +chrX 2715566 . A G 2089 . AC=1;AF=0.333;AN=3;AS_AltDP=64;AS_QD=33.11;DP=112;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.11;SOR=1.306;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,64:64:99:.:2119,0:0,0,24,40 0/0:.:60:27:45:0,27,1240 +chrX 2715583 . C G 2075 . AC=1;AF=0.333;AN=3;AS_AltDP=64;AS_QD=32.89;DP=111;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.89;SOR=1.127;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,64:64:99:.:2105,0:0,0,26,38 0/0:.:60:27:45:0,27,1240 +chrX 2715760 . T C 2863 . AC=1;AF=0.333;AN=3;AS_AltDP=66;AS_QD=31.58;DP=111;ExcessHet=0.0000;FS=0.000;MQ=59.64;QD=43.83;SOR=1.793;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,66:66:99:.:2893,0:0,0,46,20 0/0:.:60:27:45:0,27,1240 +chrX 2715763 . C G 2930 . AC=1;AF=0.333;AN=3;AS_AltDP=69;AS_QD=27.90;DP=114;ExcessHet=0.0000;FS=0.000;MQ=59.66;QD=42.90;SOR=1.678;VarDP=69 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,69:69:99:.:2960,0:0,0,47,22 0/0:.:60:27:45:0,27,1240 +chrX 2715792 . G C 2083 . AC=1;AF=0.333;AN=3;AS_AltDP=66;AS_QD=32.02;DP=113;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.02;SOR=1.376;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,66:66:99:.:2113,0:0,0,42,24 0/0:.:60:27:45:0,27,1240 +chrX 2717084 . A C 3580 . AC=3;AF=1.00;AN=3;AS_AltDP=115;AS_QD=31.39;DP=117;ExcessHet=0.0000;FS=0.000;MQ=59.94;QD=31.39;SOR=0.899;VarDP=115 GT:AD:DP:GQ:PL:SB 1:0,57:57:99:1821,0:0,0,29,28 1/1:0,58:58:99:1789,174,0:0,0,23,35 +chrX 2717347 . C CAA 2111.97 . AC=3;AF=1.00;AN=3;AS_AltDP=71;AS_QD=29.88;BaseQRankSum=-0.398;DP=107;ExcessHet=0.0000;FS=0.000;MQ=59.70;MQRankSum=0;QD=29.88;ReadPosRankSum=-0.056;SOR=0.498;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,41:41:99:1269,0:0,0,25,16 1/1:1,30:31:82:882,82,0:1,0,19,11 +chrX 2717448 . G C 3910 . AC=3;AF=1.00;AN=3;AS_AltDP=121;AS_QD=32.56;DP=124;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.56;SOR=1.142;VarDP=121 GT:AD:DP:GQ:PL:SB 1:0,64:64:99:2089,0:0,0,30,34 1/1:0,57:57:99:1851,171,0:0,0,19,38 +chrX 2717937 . CTTT C 1400.97 . AC=3;AF=1.00;AN=3;AS_AltDP=41;AS_QD=32.73;BaseQRankSum=1.115;DP=77;ExcessHet=0.0000;FS=15.609;MQ=59.95;MQRankSum=0;QD=32.73;ReadPosRankSum=0.541;SOR=1.907;VarDP=44 GT:AD:DP:GQ:PL:SB 1:1,22:23:99:882,0:1,0,4,18 1/1:2,19:21:43:558,43,0:2,0,7,12 +chrX 2718034 . C T 3553 . AC=3;AF=1.00;AN=3;AS_AltDP=82;AS_QD=29.91;BaseQRankSum=-0.294;DP=83;ExcessHet=0.0000;FS=3.876;MQ=60.00;MQRankSum=0;QD=43.17;ReadPosRankSum=-0.33;SOR=0.881;VarDP=83 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,41:42:99:.:.:1759,0:.:1,0,15,26 1|1:0,41:41:99:0|1:2718034_C_T:1824,123,0:2718034:0,0,18,23 +chrX 2718041 . A G 3612 . AC=3;AF=1.00;AN=3;AS_AltDP=84;AS_QD=30.06;BaseQRankSum=-0.298;DP=86;ExcessHet=0.0000;FS=3.854;MQ=60.00;MQRankSum=0;QD=42.85;ReadPosRankSum=-0.676;SOR=0.864;VarDP=85 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,43:44:99:.:.:1818,0:.:1,0,16,27 1|1:0,41:41:99:0|1:2718034_C_T:1824,123,0:2718034:0,0,18,23 +chrX 2718210 . G C 3691 . AC=3;AF=1.00;AN=3;AS_AltDP=119;AS_QD=31.27;DP=129;ExcessHet=0.0000;FS=0.000;MQ=59.84;QD=31.27;SOR=1.247;VarDP=119 GT:AD:DP:GQ:PL:SB 1:0,63:63:99:1997,0:0,0,41,22 1/1:0,56:56:99:1724,167,0:0,0,32,24 +chrX 2718369 . C CT 282.97 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=8.47;BaseQRankSum=0.257;DP=118;ExcessHet=0.0000;FS=1.210;MQ=58.82;MQRankSum=0.076;QD=8.47;ReadPosRankSum=1.009;SOR=0.512;VarDP=38 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:99:59:0,1033 0/1:18,20:38:99:.:322,0,292:8,10,10,10 +chrX 2718494 . A G 3596 . AC=3;AF=1.00;AN=3;AS_AltDP=115;AS_QD=31.53;DP=120;ExcessHet=0.0000;FS=0.000;MQ=59.43;QD=31.53;SOR=0.820;VarDP=115 GT:AD:DP:GQ:PL:SB 1:0,53:53:99:1667,0:0,0,27,26 1/1:0,62:62:99:1959,185,0:0,0,27,35 +chrX 2719189 . T C 3802 . AC=3;AF=1.00;AN=3;AS_AltDP=116;AS_QD=33.03;DP=121;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.03;SOR=0.838;VarDP=116 GT:AD:DP:GQ:PL:SB 1:0,62:62:99:2055,0:0,0,33,29 1/1:0,54:54:99:1777,162,0:0,0,21,33 +chrX 2719398 . T TC 3290.97 . AC=3;AF=1.00;AN=3;AS_AltDP=102;AS_QD=32.65;DP=111;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.65;SOR=1.000;VarDP=102 GT:AD:DP:GQ:PL:SB 1:0,47:47:99:1528,0:0,0,25,22 1/1:0,55:55:99:1802,165,0:0,0,33,22 +chrX 2720071 . T G 3621 . AC=3;AF=1.00;AN=3;AS_AltDP=113;AS_QD=32.31;DP=116;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.31;SOR=0.822;VarDP=113 GT:AD:DP:GQ:PL:SB 1:0,59:59:99:1909,0:0,0,29,30 1/1:0,54:54:99:1742,162,0:0,0,24,30 +chrX 2720620 . CT C,CTT 729.97 . AC=0,3;AF=0.00,1.00;AN=3;AS_AltDP=10,49;AS_QD=0.00,15.38;BaseQRankSum=1.529;DP=99;ExcessHet=0.0000;FS=4.559;MQ=59.21;MQRankSum=-0.299;QD=12.82;ReadPosRankSum=0.06;SOR=1.355;VarDP=60 GT:AD:DP:GQ:PL:SB 2:0,10,21:31:99:267,269,0:0,0,18,13 2/2:1,0,28:29:74:502,505,512,74,82,0:0,1,21,7 +chrX 2720986 . T G 3483 . AC=3;AF=1.00;AN=3;AS_AltDP=107;AS_QD=32.83;DP=114;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.83;SOR=1.056;VarDP=107 GT:AD:DP:GQ:PL:SB 1:0,52:52:99:1687,0:0,0,19,33 1/1:0,55:55:99:1826,165,0:0,0,26,29 +chrX 2723161 . A C 2013 . AC=1;AF=0.333;AN=3;AS_AltDP=64;AS_QD=31.92;DP=127;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.92;SOR=1.044;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,64:64:99:.:2043,0:0,0,37,27 0/0:.:59:89:59:0,89,1380 +chrX 2723532 . T TC 1592.97 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=31.38;DP=112;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.38;SOR=0.853;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:57:99:57:0,1058 1/1:0,52:52:99:.:1632,156,0:0,0,28,24 +chrX 2724525 . C T 2238 . AC=2;AF=0.667;AN=3;AS_AltDP=69;AS_QD=32.87;DP=129;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.87;SOR=1.131;VarDP=69 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:57:99:57:0,1058 1/1:0,69:69:99:.:2268,207,0:0,0,28,41 +chrX 2724771 . C G 1838 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=30.62;BaseQRankSum=-0.451;DP=119;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=30.62;ReadPosRankSum=-0.994;SOR=0.280;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:57:99:57:0,1058 1/1:1,60:61:99:.:1868,147,0:1,0,32,28 +chrX 2725050 . A G 1685 . AC=1;AF=0.333;AN=3;AS_AltDP=55;AS_QD=30.63;BaseQRankSum=1.604;DP=110;ExcessHet=0.0000;FS=0.000;MQ=59.39;MQRankSum=4.44;QD=30.63;ReadPosRankSum=-1.3;SOR=0.436;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,55:56:99:.:1715,0:1,0,33,22 0/0:.:53:69:53:0,69,1096 +chrX 2725330 . T C 2152 . AC=2;AF=0.667;AN=3;AS_AltDP=71;AS_QD=30.73;DP=134;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.73;SOR=1.042;VarDP=71 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,1457 1/1:0,71:71:99:.:2182,211,0:0,0,30,41 +chrX 2725652 . C T 608 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=13.57;BaseQRankSum=1.487;DP=112;ExcessHet=0.0000;FS=6.062;MQ=59.92;MQRankSum=-0.979;QD=13.57;ReadPosRankSum=-0.532;SOR=1.025;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,1457 0/1:24,23:47:99:.:638,0,633:10,14,14,9 +chrX 2725878 . G C 1095 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=19.40;BaseQRankSum=-0.021;DP=123;ExcessHet=0.0000;FS=1.050;MQ=60.00;MQRankSum=0;QD=19.40;ReadPosRankSum=-0.131;SOR=0.914;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,1457 0/1:20,38:58:99:.:1125,0,511:10,10,17,21 +chrX 2726261 . C T 679 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=14.18;BaseQRankSum=2.37;DP=114;ExcessHet=0.0000;FS=2.429;MQ=60.00;MQRankSum=0;QD=14.18;ReadPosRankSum=0.631;SOR=0.921;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,1457 0/1:24,26:50:99:.:709,0,554:11,13,15,11 +chrX 2726475 . G T 713 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=11.98;BaseQRankSum=0.694;DP=129;ExcessHet=0.0000;FS=0.984;MQ=60.00;MQRankSum=0;QD=11.98;ReadPosRankSum=1.366;SOR=0.526;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,1457 0/1:34,28:62:99:.:743,0,911:21,13,16,12 +chrX 2726690 . AGCC A 1160.97 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=20.69;BaseQRankSum=0.19;DP=121;ExcessHet=0.0000;FS=7.270;MQ=60.00;MQRankSum=0;QD=20.69;ReadPosRankSum=0.016;SOR=1.053;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,1457 0/1:27,31:58:99:.:1200,0,1017:16,11,12,19 +chrX 2727325 . G C 2709 . AC=2;AF=0.667;AN=3;AS_AltDP=90;AS_QD=25.60;BaseQRankSum=0.138;DP=110;ExcessHet=0.0000;FS=9.665;MQ=60.00;MQRankSum=0;QD=25.60;ReadPosRankSum=1.116;SOR=0.141;VarDP=107 GT:AD:DP:GQ:PL:SB 1:0,61:61:99:1933,0:0,0,28,33 0/1:17,29:46:99:806,0,394:4,13,15,14 +chrX 2728392 . C T 722 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=13.67;BaseQRankSum=-0.667;DP=116;ExcessHet=0.0000;FS=2.268;MQ=60.00;MQRankSum=0;QD=13.67;ReadPosRankSum=1.861;SOR=0.676;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:33:60:0,33 0/1:27,28:55:99:.:752,0,752:15,12,13,15 +chrX 2728834 . CT C 74.97 . AC=1;AF=0.333;AN=3;AS_AltDP=10;AS_QD=3.93;BaseQRankSum=-1.141;DP=104;ExcessHet=0.0000;FS=16.790;MQ=58.89;MQRankSum=0;QD=3.93;ReadPosRankSum=-0.138;SOR=2.225;VarDP=29 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:33:60:0,33 0/1:19,10:29:99:.:114,0,267:13,6,2,8 +chrX 2728916 . A AACCTCC 1079.97 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=23.81;BaseQRankSum=-2.119;DP=107;ExcessHet=0.0000;FS=1.174;MQ=60.00;MQRankSum=0;QD=23.81;ReadPosRankSum=1.019;SOR=0.922;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:33:60:0,33 0/1:19,28:47:99:.:1119,0,708:7,12,9,19 +chrX 2729396 . C A 700 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=13.27;BaseQRankSum=0.692;DP=119;ExcessHet=0.0000;FS=0.000;MQ=59.56;MQRankSum=0;QD=13.27;ReadPosRankSum=-2.282;SOR=0.793;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:33:60:0,33 0/1:28,27:55:99:.:730,0,733:18,10,18,9 +chrX 2729440 . TA T 848.97 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=16.75;BaseQRankSum=0.174;DP=113;ExcessHet=0.0000;FS=5.608;MQ=59.80;MQRankSum=-1.322;QD=16.75;ReadPosRankSum=-0.579;SOR=0.781;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:33:60:0,33 0/1:25,28:53:99:.:888,0,773:10,15,16,12 +chrX 2729608 . C T 766 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=13.96;BaseQRankSum=-0.545;DP=118;ExcessHet=0.0000;FS=7.529;MQ=60.00;MQRankSum=0;QD=13.96;ReadPosRankSum=0.312;SOR=0.184;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:33:60:0,33 0/1:27,30:57:99:.:796,0,728:8,19,15,15 +chrX 2729629 . A T 705 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=14.41;BaseQRankSum=-2.18;DP=114;ExcessHet=0.0000;FS=5.870;MQ=60.00;MQRankSum=0;QD=14.41;ReadPosRankSum=-0.661;SOR=0.356;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:33:60:0,33 0/1:24,27:51:99:.:735,0,681:8,16,14,13 +chrX 2730014 . C T 294 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=7.90;BaseQRankSum=0.456;DP=106;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=7.90;ReadPosRankSum=1.376;SOR=0.850;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:33:60:0,33 0/1:27,14:41:99:.:324,0,696:18,9,10,4 +chrX 2730054 . C T 3120 . AC=2;AF=0.667;AN=3;AS_AltDP=102;AS_QD=26.03;BaseQRankSum=2.264;DP=122;ExcessHet=0.0000;FS=2.037;MQ=60.00;MQRankSum=0;QD=26.03;ReadPosRankSum=2.044;SOR=0.783;VarDP=121 GT:AD:DP:GQ:PL:SB 1:1,71:72:99:2299,0:0,1,31,40 0/1:18,31:49:99:851,0,409:10,8,16,15 +chrX 2730175 . CTT CT,C 1239.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=35,14;AS_QD=26.86,27.69;BaseQRankSum=2.147;DP=78;ExcessHet=0.0000;FS=0.000;MQ=59.29;MQRankSum=3.75;QD=25.08;ReadPosRankSum=0.139;SOR=0.818;VarDP=51 GT:AD:DP:GQ:PL:SB 1:1,25,0:26:99:627,0,645:0,1,10,15 1/2:1,10,14:25:99:652,330,285,209,0,257:1,0,16,8 +chrX 2730929 . CAA CA,C,CAAA 1043.97 . AC=1,1,1;AF=0.333,0.333,0.333;AN=3;AS_AltDP=20,15,16;AS_QD=16.30,21.89,12.21;DP=98;ExcessHet=0.0000;FS=2.653;MQ=58.74;MQRankSum=-0.624;QD=20.06;SOR=0.182;VarDP=54 GT:AD:DP:GQ:PL:SB 1:3,20,0,0:23:99:375,0,438,438:0,3,9,11 2/3:0,0,15,16:31:99:708,783,983,314,516,628,476,542,0,528:0,0,9,22 +chrX 2731612 . A T 2698 . AC=2;AF=0.667;AN=3;AS_AltDP=87;AS_QD=24.80;BaseQRankSum=0.72;DP=118;ExcessHet=0.0000;FS=0.000;MQ=59.92;MQRankSum=1.022;QD=24.80;ReadPosRankSum=0.5;SOR=0.641;VarDP=110 GT:AD:DP:GQ:PL:SB 1:0,65:65:99:2129,0:0,0,33,32 0/1:23,22:45:99:599,0,614:11,12,11,11 +chrX 2731791 . C T 3029 . AC=2;AF=0.667;AN=3;AS_AltDP=98;AS_QD=24.47;BaseQRankSum=0.056;DP=127;ExcessHet=0.0000;FS=4.160;MQ=60.00;MQRankSum=0;QD=24.47;ReadPosRankSum=0.639;SOR=0.824;VarDP=125 GT:AD:DP:GQ:PL:SB 1:0,66:66:99:2184,0:0,0,27,39 0/1:27,32:59:99:875,0,715:15,12,16,16 +chrX 2731970 . T TA 1179.97 . AC=1;AF=0.333;AN=3;AS_AltDP=47;AS_QD=25.94;DP=114;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=25.94;SOR=0.823;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,47:47:99:.:1219,0:0,0,25,22 0/0:.:55:91:55:0,91,1348 +chrX 2732242 . C T 1602 . AC=1;AF=0.333;AN=3;AS_AltDP=50;AS_QD=32.64;DP=106;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.64;SOR=0.773;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,50:50:99:.:1632,0:0,0,26,24 0/0:.:55:91:55:0,91,1348 +chrX 2732269 . A G 2394 . AC=2;AF=0.667;AN=3;AS_AltDP=85;AS_QD=20.90;BaseQRankSum=-1.225;DP=123;ExcessHet=0.0000;FS=2.747;MQ=60.00;MQRankSum=0;QD=20.90;ReadPosRankSum=-1.234;SOR=0.669;VarDP=116 GT:AD:DP:GQ:PL:SB 1:0,59:59:99:1850,0:0,0,29,30 0/1:31,26:57:99:574,0,813:17,14,11,15 +chrX 2732523 . T C,G 314 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=1,13;AS_QD=0.00,13.23;BaseQRankSum=0.152;DP=92;ExcessHet=0.0000;FS=3.473;MQ=60.00;MQRankSum=0;QD=12.74;ReadPosRankSum=0.049;SOR=0.741;VarDP=27 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,591,591 0/2:13,1,13:27:99:.:344,376,731,0,351,319:8,5,6,8 +chrX 2732562 . C CCT 298.97 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=12.52;BaseQRankSum=0.579;DP=93;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=12.52;ReadPosRankSum=0.801;SOR=0.582;VarDP=27 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:99:63:.:.:0,591 0|1:14,13:27:99:.:0|1:2732562_C_CCT:338,0,386:2732562:8,6,7,6 +chrX 2732571 . C CTT 409.97 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=15.48;BaseQRankSum=0.19;DP=94;ExcessHet=0.0000;FS=1.449;MQ=60.00;MQRankSum=0;QD=15.48;ReadPosRankSum=-1.514;SOR=1.061;VarDP=29 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:63:99:63:.:.:0,591 0|1:13,16:29:99:.:1|0:2732562_C_CCT:449,0,345:2732562:7,6,10,6 +chrX 2732768 . T TC 398.97 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=12.17;BaseQRankSum=0.845;DP=103;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=12.17;ReadPosRankSum=-0.127;SOR=0.668;VarDP=36 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,591 0/1:20,16:36:99:.:438,0,516:5,15,4,12 +chrX 2732851 . G T 536 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=14.15;BaseQRankSum=1.862;DP=103;ExcessHet=0.0000;FS=1.236;MQ=60.00;MQRankSum=0;QD=14.15;ReadPosRankSum=0.534;SOR=0.758;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,591 0/1:20,20:40:99:.:566,0,495:11,9,9,11 +chrX 2732938 . T C 256 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=9.23;BaseQRankSum=0.143;DP=95;ExcessHet=0.0000;FS=0.000;MQ=59.33;MQRankSum=-1.111;QD=9.23;ReadPosRankSum=-0.461;SOR=0.919;VarDP=31 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,591 0/1:18,13:31:99:.:286,0,462:10,8,8,5 +chrX 2733059 . C CCT 573.97 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=16.57;BaseQRankSum=0.483;DP=105;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=16.57;ReadPosRankSum=-0.579;SOR=0.839;VarDP=37 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,591 0/1:20,17:37:99:.:613,0,759:9,11,7,10 +chrX 2733085 . C T 474 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=12.00;BaseQRankSum=-1.926;DP=107;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=12.00;ReadPosRankSum=-1.112;SOR=0.724;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,591 0/1:23,19:42:99:.:504,0,673:12,11,9,10 +chrX 2733525 . C T 990 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=15.22;BaseQRankSum=-0.778;DP=131;ExcessHet=0.0000;FS=0.969;MQ=60.00;MQRankSum=0;QD=15.22;ReadPosRankSum=-0.247;SOR=0.519;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,591 0/1:29,38:67:99:.:1020,0,742:10,19,15,23 +chrX 2734698 . A T 209 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=5.09;BaseQRankSum=-2.715;DP=116;ExcessHet=0.0000;FS=7.745;MQ=60.00;MQRankSum=0;QD=5.09;ReadPosRankSum=0.266;SOR=1.744;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,591 0/1:36,11:47:99:.:239,0,1047:20,16,3,8 +chrX 2735511 . C G 1741 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=32.20;BaseQRankSum=-0.21;DP=118;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=32.20;ReadPosRankSum=0.662;SOR=0.253;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,591 1/1:1,54:55:99:.:1771,130,0:0,1,26,28 +chrX 2735872 . G A 2099 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=33.79;DP=128;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.79;SOR=0.859;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,591 1/1:0,63:63:99:.:2129,189,0:0,0,29,34 +chrX 2736419 . A G 1790 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=34.34;DP=118;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=34.34;SOR=1.077;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,591 1/1:0,53:53:99:.:1820,159,0:0,0,22,31 +chrX 2736813 . C T 591 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=11.29;BaseQRankSum=1.88;DP=120;ExcessHet=0.0000;FS=2.481;MQ=59.85;MQRankSum=-0.131;QD=11.29;ReadPosRankSum=-0.323;SOR=0.407;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,591 0/1:31,24:55:99:.:621,0,708:8,23,8,16 +chrX 2736884 . TAAATAAA T 401.97 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=9.59;BaseQRankSum=-0.145;DP=114;ExcessHet=0.0000;FS=1.227;MQ=60.00;MQRankSum=0;QD=9.59;ReadPosRankSum=-1.349;SOR=0.976;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,591 0/1:32,14:46:99:.:441,0,1252:16,16,6,8 +chrX 2736968 . T C 656 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=12.25;BaseQRankSum=-1.084;DP=121;ExcessHet=0.0000;FS=1.027;MQ=60.00;MQRankSum=0;QD=12.25;ReadPosRankSum=-0.837;SOR=0.540;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:99:63:0,591 0/1:27,29:56:99:.:686,0,646:17,10,17,12 +chrX 2737091 . T C 2362 . AC=2;AF=0.667;AN=3;AS_AltDP=79;AS_QD=23.68;BaseQRankSum=-0.128;DP=104;ExcessHet=0.0000;FS=18.761;MQ=60.00;MQRankSum=0;QD=23.68;ReadPosRankSum=0.308;SOR=1.472;VarDP=101 GT:AD:DP:GQ:PL:SB 1:0,55:55:99:1746,0:0,0,19,36 0/1:22,24:46:99:646,0,572:14,8,7,17 +chrX 2737166 . T C 636 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=13.59;BaseQRankSum=0.828;DP=111;ExcessHet=0.0000;FS=8.545;MQ=60.00;MQRankSum=0;QD=13.59;ReadPosRankSum=1.361;SOR=1.995;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,1723 0/1:25,24:49:99:.:666,0,682:13,12,18,6 +chrX 2737291 . T C 832 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=14.37;BaseQRankSum=0.964;DP=125;ExcessHet=0.0000;FS=2.182;MQ=57.78;MQRankSum=-0.146;QD=14.37;ReadPosRankSum=2.105;SOR=0.863;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:58:99:58:0,1612 0/1:28,32:60:99:.:862,0,688:13,15,18,14 +chrX 2737310 . G T 2704 . AC=3;AF=1.00;AN=3;AS_AltDP=93;AS_QD=23.17;BaseQRankSum=1.328;DP=122;ExcessHet=0.0000;FS=0.850;MQ=58.49;MQRankSum=1.096;QD=23.17;ReadPosRankSum=-1.275;SOR=0.546;VarDP=118 GT:AD:DP:GQ:PL:SB 1:25,28:53:99:167,0:14,11,14,14 1/1:0,65:65:99:2567,196,0:0,0,34,31 +chrX 2737322 . T C 1439 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=22.60;BaseQRankSum=-1.025;DP=122;ExcessHet=0.0000;FS=0.941;MQ=57.30;MQRankSum=-1.404;QD=22.60;ReadPosRankSum=0.583;SOR=0.859;VarDP=65 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:55:99:55:.:.:0,1438 0|1:28,37:65:99:.:0|1:2737322_T_C:1469,0,1018:2737322:14,14,20,17 +chrX 2737325 . A C 1468 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=22.36;BaseQRankSum=-0.509;DP=123;ExcessHet=0.0000;FS=0.000;MQ=57.43;MQRankSum=-1.42;QD=22.36;ReadPosRankSum=0.596;SOR=0.729;VarDP=67 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:55:99:55:.:.:0,1438 0|1:29,38:67:99:.:0|1:2737322_T_C:1498,0,1057:2737322:15,14,20,18 +chrX 2737334 . C T 1556 . AC=1;AF=0.333;AN=3;AS_AltDP=41;AS_QD=22.99;BaseQRankSum=-0.532;DP=126;ExcessHet=0.0000;FS=0.936;MQ=57.54;MQRankSum=-1.249;QD=22.99;ReadPosRankSum=-0.539;SOR=0.496;VarDP=69 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:55:99:55:.:.:0,1438 0|1:28,41:69:99:.:0|1:2737322_T_C:1586,0,1016:2737322:16,12,21,20 +chrX 2737422 . C T 975 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=16.75;BaseQRankSum=-0.84;DP=116;ExcessHet=0.0000;FS=1.032;MQ=57.61;MQRankSum=-2.523;QD=16.75;ReadPosRankSum=0.395;SOR=0.883;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:55:99:55:0,1438 0/1:23,37:60:99:.:1005,0,578:9,14,13,24 +chrX 2737426 . T TG 4174.97 . AC=3;AF=1.00;AN=3;AS_AltDP=110;AS_QD=28.93;DP=112;ExcessHet=0.0000;FS=0.000;MQ=58.49;QD=38.31;SOR=1.274;VarDP=110 GT:AD:DP:GQ:PL:SB 1:0,50:50:99:1774,0:0,0,19,31 1/1:0,60:60:99:2440,181,0:0,0,23,37 +chrX 2737564 . G A 1103 . AC=2;AF=0.667;AN=3;AS_AltDP=71;AS_QD=8.27;BaseQRankSum=0.722;DP=139;ExcessHet=0.0000;FS=5.145;MQ=59.70;MQRankSum=1.578;QD=8.27;ReadPosRankSum=-0.148;SOR=1.114;VarDP=137 GT:AD:DP:GQ:PL:SB 1:31,37:68:99:234,0:16,15,24,13 0/1:35,34:69:99:899,0,885:18,17,19,15 +chrX 2737617 . C A 691 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=10.76;BaseQRankSum=-0.399;DP=130;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=10.76;ReadPosRankSum=0.208;SOR=0.795;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,1529 0/1:37,30:67:99:.:721,0,954:20,17,17,13 +chrX 2737662 . C G 694 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=13.66;BaseQRankSum=-0.314;DP=118;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.66;ReadPosRankSum=0.178;SOR=0.608;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,1529 0/1:25,28:53:99:.:724,0,640:11,14,13,15 +chrX 2737771 . C T 596 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=11.18;BaseQRankSum=1.517;DP=120;ExcessHet=0.0000;FS=3.773;MQ=59.71;MQRankSum=0.902;QD=11.18;ReadPosRankSum=-0.596;SOR=0.340;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,1529 0/1:32,24:56:99:.:626,0,819:11,21,11,13 +chrX 2738139 . T C 887 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=13.89;BaseQRankSum=-1.24;DP=131;ExcessHet=0.0000;FS=4.912;MQ=60.00;MQRankSum=0;QD=13.89;ReadPosRankSum=0.631;SOR=0.915;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,1529 0/1:30,36:66:99:.:917,0,782:13,17,21,15 +chrX 2738217 . G A 869 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=14.74;BaseQRankSum=0.182;DP=127;ExcessHet=0.0000;FS=0.970;MQ=60.00;MQRankSum=0;QD=14.74;ReadPosRankSum=-0.578;SOR=0.880;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:62:99:62:0,1529 0/1:29,32:61:99:.:899,0,780:15,14,18,14 +chrX 2738394 . G A 638 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=11.72;BaseQRankSum=0.012;DP=120;ExcessHet=0.0000;FS=7.500;MQ=60.00;MQRankSum=0;QD=11.72;ReadPosRankSum=-0.072;SOR=1.676;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:34:58:0,34 0/1:31,26:57:99:.:668,0,832:16,15,8,18 +chrX 2738809 . C T 1652 . AC=2;AF=0.667;AN=3;AS_AltDP=49;AS_QD=34.33;DP=108;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=34.33;SOR=0.818;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:34:58:0,34 1/1:0,49:49:99:.:1682,147,0:0,0,23,26 +chrX 2739195 . A C 555 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=10.64;BaseQRankSum=-1.532;DP=116;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=10.64;ReadPosRankSum=-0.034;SOR=0.796;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:34:58:0,34 0/1:30,25:55:99:.:585,0,799:14,16,11,14 +chrX 2739313 . G T 1042 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=20.62;BaseQRankSum=0.762;DP=111;ExcessHet=0.0000;FS=2.391;MQ=60.00;MQRankSum=0;QD=20.62;ReadPosRankSum=0.055;SOR=1.179;VarDP=52 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:61:34:58:.:.:0,34 0|1:24,28:52:99:.:0|1:2739313_G_T:1072,0,824:2739313:12,12,11,17 +chrX 2739337 . A C 1363 . AC=1;AF=0.333;AN=3;AS_AltDP=39;AS_QD=22.84;BaseQRankSum=1.168;DP=120;ExcessHet=0.0000;FS=2.222;MQ=60.00;MQRankSum=0;QD=22.84;ReadPosRankSum=-1.503;SOR=0.721;VarDP=61 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:61:34:58:.:.:0,34 0|1:22,39:61:99:.:0|1:2739313_G_T:1393,0,719:2739313:10,12,21,18 +chrX 2739445 . A G 1357 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=19.00;BaseQRankSum=0.214;DP=132;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=19.00;ReadPosRankSum=-0.035;SOR=0.641;VarDP=73 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:61:34:58:.:.:0,34 0|1:35,38:73:99:.:0|1:2739445_A_G:1387,0,1304:2739445:17,18,19,19 +chrX 2739460 . T A 1255 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=18.36;BaseQRankSum=1.728;DP=130;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=18.36;ReadPosRankSum=-0.335;SOR=0.593;VarDP=70 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:61:34:58:.:.:0,34 0|1:36,34:70:99:.:0|1:2739445_A_G:1285,0,1323:2739445:19,17,17,17 +chrX 2739920 . T TA,TAA 363.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=6,8;AS_QD=30.72,32.63;DP=91;ExcessHet=0.0000;FS=0.000;MQ=59.49;QD=28.79;SOR=0.693;VarDP=14 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:34:58:0,34,34 1/2:0,6,8:14:77:.:403,160,107,116,0,77:0,0,7,7 +chrX 2740095 . AAAT A 925.97 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=19.69;BaseQRankSum=-1.709;DP=120;ExcessHet=0.0000;FS=4.055;MQ=59.79;MQRankSum=0;QD=19.69;ReadPosRankSum=1.25;SOR=1.358;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:34:58:0,34 0/1:24,25:49:99:.:965,0,925:12,12,9,16 +chrX 2740258 . G A 1887 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=30.92;BaseQRankSum=-0.431;DP=123;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=30.92;ReadPosRankSum=1.296;SOR=0.871;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:34:58:0,34 1/1:2,60:62:99:.:1917,117,0:1,1,32,27 +chrX 2740275 . G T 1781 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=30.18;BaseQRankSum=-0.496;DP=119;ExcessHet=0.0000;FS=2.477;MQ=60.00;MQRankSum=0;QD=30.18;ReadPosRankSum=1.052;SOR=0.944;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:34:58:0,34 1/1:3,57:60:76:.:1811,76,0:1,2,34,23 +chrX 2740579 . A AT 320.97 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=8.18;BaseQRankSum=0.86;DP=106;ExcessHet=0.0000;FS=9.025;MQ=60.00;MQRankSum=0;QD=8.18;ReadPosRankSum=-1.085;SOR=0.774;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:34:58:0,34 0/1:27,17:44:99:.:360,0,677:9,18,10,7 +chrX 2740657 . G A 533 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=11.98;BaseQRankSum=-1.719;DP=106;ExcessHet=0.0000;FS=2.499;MQ=60.00;MQRankSum=0;QD=11.98;ReadPosRankSum=0.757;SOR=0.394;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:34:58:0,34 0/1:25,22:47:99:.:563,0,707:16,9,12,10 +chrX 2740742 . C A 772 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=16.37;BaseQRankSum=-0.216;DP=107;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=16.37;ReadPosRankSum=0.055;SOR=0.681;VarDP=49 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:61:34:58:.:.:0,34 0|1:27,22:49:99:.:0|1:2740742_C_A:802,0,961:2740742:16,11,13,9 +chrX 2740759 . T C 856 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=17.04;BaseQRankSum=-1.272;DP=111;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=17.04;ReadPosRankSum=-0.699;SOR=0.709;VarDP=52 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:61:34:58:.:.:0,34 0|1:27,25:52:99:.:0|1:2740742_C_A:886,0,987:2740742:15,12,14,11 +chrX 2741191 . C T 597 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=11.00;BaseQRankSum=-2.667;DP=116;ExcessHet=0.0000;FS=2.304;MQ=60.00;MQRankSum=0;QD=11.00;ReadPosRankSum=0.296;SOR=1.179;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:34:58:0,34 0/1:31,26:57:99:.:627,0,881:14,17,9,17 +chrX 2741910 . G C 1061 . AC=1;AF=0.333;AN=3;AS_AltDP=41;AS_QD=15.59;BaseQRankSum=0.276;DP=132;ExcessHet=0.0000;FS=15.887;MQ=60.00;MQRankSum=0;QD=15.59;ReadPosRankSum=0.072;SOR=1.766;VarDP=70 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:34:58:0,34 0/1:29,41:70:99:.:1091,0,674:17,12,12,29 +chrX 2741963 . A T 953 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=14.46;BaseQRankSum=0.879;DP=129;ExcessHet=0.0000;FS=8.261;MQ=60.00;MQRankSum=0;QD=14.46;ReadPosRankSum=0.086;SOR=0.327;VarDP=68 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:34:58:0,34 0/1:33,35:68:99:.:983,0,875:22,11,17,18 +chrX 2742019 . CT C 173.97 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=5.07;BaseQRankSum=0.902;DP=118;ExcessHet=0.0000;FS=4.603;MQ=59.72;MQRankSum=0;QD=5.07;ReadPosRankSum=-1.156;SOR=0.494;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:34:58:0,34 0/1:27,15:42:99:.:213,0,419:17,10,7,8 +chrX 2742164 . C T 607 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=11.80;BaseQRankSum=2.629;DP=115;ExcessHet=0.0000;FS=6.166;MQ=60.00;MQRankSum=0;QD=11.80;ReadPosRankSum=-1.522;SOR=1.656;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:34:58:0,34 0/1:31,23:54:99:.:637,0,835:12,19,5,18 +chrX 2742607 . G A 499 . AC=1;AF=0.500;AN=2;AS_AltDP=19;AS_QD=12.30;BaseQRankSum=1.869;DP=100;ExcessHet=0.0000;FS=1.192;MQ=59.75;MQRankSum=0;QD=12.30;ReadPosRankSum=-0.673;SOR=1.022;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB .:.:54:0:54:0,0 0/1:24,19:43:99:.:529,0,650:12,12,8,11 +chrX 2742640 . C CTTTT,CTTTTTTT 614.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=5,2;AS_QD=36.63,33.03;BaseQRankSum=1.15;DP=112;ExcessHet=0.0000;FS=4.260;MQ=57.60;MQRankSum=-0.319;QD=81.75;ReadPosRankSum=-0.489;SOR=1.447;VarDP=8 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:99:68:0,158,158 1/2:1,5,2:8:5:.:654,51,5,117,0,99:0,1,5,2 +chrX 2742673 . C T 178 . AC=1;AF=0.333;AN=3;AS_AltDP=7;AS_QD=6.50;BaseQRankSum=-1.472;DP=109;ExcessHet=0.0000;FS=36.284;MQ=58.51;MQRankSum=0;QD=6.50;ReadPosRankSum=0.761;SOR=4.160;VarDP=32 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:68:99:68:.:.:0,158 0|1:25,7:32:99:.:0|1:2742673_C_T:208,0,1029:2742673:5,20,7,0 +chrX 2742675 . A T 172 . AC=1;AF=0.333;AN=3;AS_AltDP=7;AS_QD=5.94;BaseQRankSum=-0.568;DP=105;ExcessHet=0.0000;FS=31.952;MQ=58.35;MQRankSum=-0.076;QD=5.94;ReadPosRankSum=0.775;SOR=4.161;VarDP=34 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:68:99:68:.:.:0,158 0|1:27,7:34:99:.:0|1:2742673_C_T:202,0,1113:2742673:7,20,7,0 +chrX 2742678 . C T 163 . AC=1;AF=0.333;AN=3;AS_AltDP=7;AS_QD=5.22;BaseQRankSum=-1.008;DP=108;ExcessHet=0.0000;FS=27.238;MQ=58.47;MQRankSum=-0.18;QD=5.22;ReadPosRankSum=1.068;SOR=4.163;VarDP=37 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:68:99:68:.:.:0,158 0|1:30,7:37:99:.:0|1:2742673_C_T:193,0,1239:2742673:10,20,7,0 +chrX 2742681 . C T 166 . AC=1;AF=0.333;AN=3;AS_AltDP=7;AS_QD=5.44;BaseQRankSum=-1.415;DP=107;ExcessHet=0.0000;FS=26.327;MQ=58.87;MQRankSum=-0.5;QD=5.44;ReadPosRankSum=0.165;SOR=4.164;VarDP=36 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:68:99:68:.:.:0,158 0|1:29,7:36:99:.:0|1:2742673_C_T:196,0,1197:2742673:10,19,7,0 +chrX 2742686 . TAC T 105.97 . AC=1;AF=0.333;AN=3;AS_AltDP=6;AS_QD=3.82;BaseQRankSum=-2.741;DP=109;ExcessHet=0.0000;FS=21.723;MQ=59.34;MQRankSum=-1.241;QD=3.82;ReadPosRankSum=-0.069;SOR=3.900;VarDP=38 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:68:99:68:.:.:0,158 0|1:32,6:38:99:.:0|1:2742673_C_T:145,0,1326:2742673:12,20,6,0 +chrX 2742690 . C T 84 . AC=1;AF=0.333;AN=3;AS_AltDP=5;AS_QD=3.08;BaseQRankSum=-1.981;DP=108;ExcessHet=0.0000;FS=17.065;MQ=59.71;MQRankSum=-2.451;QD=3.08;ReadPosRankSum=-0.732;SOR=3.597;VarDP=37 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:68:99:68:.:.:0,158 0|1:32,5:37:99:.:0|1:2742673_C_T:114,0,1329:2742673:13,19,5,0 +chrX 2742693 . C T 36 . AC=1;AF=0.333;AN=3;AS_AltDP=4;AS_QD=1.74;BaseQRankSum=-0.59;DP=109;ExcessHet=0.0000;FS=13.824;MQ=59.72;MQRankSum=-2.83;QD=1.74;ReadPosRankSum=-0.504;SOR=3.239;VarDP=38 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:68:99:68:.:.:0,158 0|1:34,4:38:66:.:0|1:2742673_C_T:66,0,1416:2742673:14,20,4,0 +chrX 2742695 . G T 33 . AC=1;AF=0.333;AN=3;AS_AltDP=4;AS_QD=1.62;BaseQRankSum=0.128;DP=110;ExcessHet=0.0000;FS=14.294;MQ=59.72;MQRankSum=-2.874;QD=1.62;ReadPosRankSum=-0.5;SOR=3.237;VarDP=39 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:68:99:68:.:.:0,158 0|1:35,4:39:63:.:0|1:2742673_C_T:63,0,1458:2742673:14,21,4,0 +chrX 2742696 . C T 33 . AC=1;AF=0.333;AN=3;AS_AltDP=4;AS_QD=1.62;BaseQRankSum=0.063;DP=110;ExcessHet=0.0000;FS=14.294;MQ=59.72;MQRankSum=-2.874;QD=1.62;ReadPosRankSum=-0.764;SOR=3.237;VarDP=39 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:68:99:68:.:.:0,158 0|1:35,4:39:63:.:0|1:2742673_C_T:63,0,1458:2742673:14,21,4,0 +chrX 2743482 . G A 402 . AC=1;AF=0.333;AN=3;AS_AltDP=41;AS_QD=6.26;BaseQRankSum=-0.46;DP=114;ExcessHet=0.0000;FS=0.916;MQ=60.00;MQRankSum=0;QD=6.26;ReadPosRankSum=-0.031;SOR=0.573;VarDP=69 GT:AD:DP:GQ:MIN_DP:PL:SB 1:28,41:69:99:.:432,0:12,16,19,22 0/0:.:46:26:43:0,26,1117 +chrX 2743515 . A C 93 . AC=1;AF=0.333;AN=3;AS_AltDP=39;AS_QD=1.60;BaseQRankSum=2.334;DP=124;ExcessHet=0.0000;FS=0.864;MQ=60.00;MQRankSum=0;QD=1.60;ReadPosRankSum=1.233;SOR=0.550;VarDP=77 GT:AD:DP:GQ:MIN_DP:PL:SB 1:38,39:77:99:.:123,0:16,22,18,21 0/0:.:46:26:43:0,26,1117 +chrX 2743651 . T G 524 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=13.19;BaseQRankSum=-2.331;DP=111;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.19;ReadPosRankSum=0.73;SOR=0.884;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:99:68:0,862 0/1:21,21:42:99:.:554,0,604:11,10,12,9 +chrX 2743811 . A G 1161 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=18.61;BaseQRankSum=-1.161;DP=132;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=18.61;ReadPosRankSum=1.54;SOR=0.704;VarDP=64 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:68:99:68:.:.:0,862 0|1:33,31:64:99:.:0|1:2743811_A_G:1191,0,1260:2743811:18,15,17,14 +chrX 2743815 . A G 1164 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=18.95;BaseQRankSum=-1.462;DP=132;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=18.95;ReadPosRankSum=1.98;SOR=0.641;VarDP=63 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:68:99:68:.:.:0,862 0|1:32,31:63:99:.:0|1:2743811_A_G:1194,0,1229:2743811:18,14,17,14 +chrX 2743837 . C T 869 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=14.74;BaseQRankSum=1.585;DP=133;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.74;ReadPosRankSum=1.25;SOR=0.631;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:99:68:0,862 0/1:29,32:61:99:.:899,0,739:15,14,16,16 +chrX 2744076 . A G 496 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=10.96;BaseQRankSum=1.239;DP=117;ExcessHet=0.0000;FS=1.098;MQ=60.00;MQRankSum=0;QD=10.96;ReadPosRankSum=0.931;SOR=0.892;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:99:68:0,862 0/1:28,20:48:99:.:526,0,775:14,14,11,9 +chrX 2744852 . G A 862 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=14.16;BaseQRankSum=-1.154;DP=132;ExcessHet=0.0000;FS=2.143;MQ=59.95;MQRankSum=0;QD=14.16;ReadPosRankSum=0.65;SOR=0.402;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:99:68:0,862 0/1:28,35:63:99:.:892,0,724:11,17,17,18 +chrX 2744988 . T TA 266.97 . AC=2;AF=0.667;AN=3;AS_AltDP=33;AS_QD=4.78;BaseQRankSum=1.238;DP=93;ExcessHet=0.0000;FS=21.689;MQ=60.00;MQRankSum=0;QD=4.78;ReadPosRankSum=-0.27;SOR=1.116;VarDP=64 GT:AD:DP:GQ:PL:SB 1:12,16:28:48:48,0:7,5,6,10 0/1:19,17:36:99:258,0,306:15,4,6,11 +chrX 2745435 . C CTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG,CTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG,CTGTGTGTGTGTGTGTG,CTGTGTGTGTGTGTGTGTG 2168.97 . AC=1,0,1,1;AF=0.333,0.00,0.333,0.333;AN=3;AS_AltDP=5,0,19,20;AS_QD=6.32,0.76,27.37,34.21;BaseQRankSum=0.891;DP=114;ExcessHet=0.0000;FS=8.134;MQ=58.94;MQRankSum=0;QD=36.20;ReadPosRankSum=0.867;SOR=0.339;VarDP=61 GT:AD:DP:GQ:PL:SB 1:16,5,0,0,0:21:99:139,0,126,495,495:12,4,5,0 3/4:1,0,0,19,20:40:99:2069,1619,1535,1619,1535,1535,531,565,565,426,513,548,548,0,409:0,1,16,23 +chrX 2745495 . T A 490 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=11.56;BaseQRankSum=-1.144;DP=109;ExcessHet=0.0000;FS=1.192;MQ=60.00;MQRankSum=0;QD=11.56;ReadPosRankSum=-0.331;SOR=1.085;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:63:70:63:0,70 0/1:25,20:45:99:.:520,0,710:11,14,7,13 +chrX 2745927 . G A 1631 . AC=2;AF=0.667;AN=3;AS_AltDP=92;AS_QD=10.86;BaseQRankSum=0.206;DP=155;ExcessHet=0.0000;FS=7.210;MQ=60.00;MQRankSum=0;QD=10.86;ReadPosRankSum=1.603;SOR=0.776;VarDP=153 GT:AD:DP:GQ:PL:SB 1:34,49:83:99:492,0:20,14,21,28 0/1:27,43:70:99:1169,0,689:14,13,20,23 +chrX 2746232 . G A 911 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=17.43;BaseQRankSum=1.11;DP=126;ExcessHet=0.0000;FS=1.102;MQ=60.00;MQRankSum=0;QD=17.43;ReadPosRankSum=-0.071;SOR=0.991;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,328 0/1:21,33:54:99:.:941,0,498:9,12,12,21 +chrX 2747834 . C T 575 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=12.35;BaseQRankSum=2.247;DP=116;ExcessHet=0.0000;FS=4.112;MQ=57.28;MQRankSum=-2.222;QD=12.35;ReadPosRankSum=-3.167;SOR=1.294;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,204 0/1:27,22:49:99:.:605,0,711:14,13,8,14 +chrX 2747891 . G A 442 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=9.83;BaseQRankSum=0.114;DP=114;ExcessHet=0.0000;FS=1.183;MQ=52.04;MQRankSum=-2.309;QD=9.83;ReadPosRankSum=1.793;SOR=0.430;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,204 0/1:29,19:48:99:.:472,0,796:19,10,11,8 +chrX 2748580 . CT C 306.97 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=8.05;BaseQRankSum=-1.124;DP=125;ExcessHet=0.0000;FS=14.833;MQ=60.00;MQRankSum=0;QD=8.05;ReadPosRankSum=1.358;SOR=1.454;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,204 0/1:24,19:43:99:.:346,0,445:16,8,6,13 +chrX 2748809 . G A 665 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=13.11;BaseQRankSum=0.013;DP=119;ExcessHet=0.0000;FS=13.254;MQ=60.00;MQRankSum=0;QD=13.11;ReadPosRankSum=-0.009;SOR=0.096;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,204 0/1:27,26:53:99:.:695,0,714:6,21,13,13 +chrX 2748845 . T C 75 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=1.69;BaseQRankSum=0.826;DP=117;ExcessHet=0.0000;FS=3.651;MQ=60.00;MQRankSum=0;QD=1.69;ReadPosRankSum=-0.972;SOR=1.293;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 1:30,32:62:99:.:105,0:13,17,10,22 0/0:.:53:87:53:0,87,1285 +chrX 2749117 . TTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC TTCCCTCCCTCCC,T 335.97 . AC=2,0;AF=0.667,0.00;AN=3;AS_AltDP=22,2;AS_QD=8.72,0.00;BaseQRankSum=2.27;DP=74;ExcessHet=0.0000;FS=0.000;MQ=58.79;MQRankSum=0;QD=8.33;ReadPosRankSum=1.37;SOR=0.427;VarDP=45 GT:AD:DP:GQ:PL:SB 1:8,8,0:16:14:14,0,353:0,8,0,8 0/1:13,14,2:29:99:361,0,462,415,449,1338:1,12,2,14 +chrX 2749236 . C CCCTT 397.97 . AC=1;AF=0.500;AN=2;AS_AltDP=11;AS_QD=23.00;BaseQRankSum=0.232;DP=55;ExcessHet=0.0000;FS=3.139;MQ=60.00;MQRankSum=0;QD=23.00;ReadPosRankSum=-0.744;SOR=0.129;VarDP=19 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB .:.:24:0:24:.:.:0,0 0|1:8,11:19:99:.:0|1:2749236_C_CCCTT:437,0,304:2749236:0,8,2,9 +chrX 2749280 . T TCCTTTCC 683.97 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=24.93;BaseQRankSum=1.281;DP=69;ExcessHet=0.0000;FS=1.735;MQ=59.94;MQRankSum=-0.711;QD=24.93;ReadPosRankSum=-0.067;SOR=0.270;VarDP=29 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:35:99:35:.:.:0,585 0|1:11,18:29:99:.:0|1:2749236_C_CCCTT:723,0,408:2749236:2,9,6,12 +chrX 2749300 . T TTGTTTC 802.97 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=24.76;BaseQRankSum=-1.765;DP=76;ExcessHet=0.0000;FS=3.086;MQ=59.95;MQRankSum=-0.726;QD=24.76;ReadPosRankSum=0.745;SOR=1.306;VarDP=34 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:35:99:35:.:.:0,585 0|1:13,21:34:99:.:0|1:2749236_C_CCCTT:842,0,483:2749236:6,7,7,14 +chrX 2749501 . T C 1339 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=14.72;BaseQRankSum=-1.353;DP=99;ExcessHet=0.0000;FS=0.794;MQ=59.95;MQRankSum=1.347;QD=14.72;ReadPosRankSum=0.142;SOR=0.575;VarDP=93 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:16,27:43:99:.:.:317,0:.:8,8,13,14 0|1:22,28:50:99:0|1:2749501_T_C:1052,0,828:2749501:14,8,17,11 +chrX 2749503 . G A 1022 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=21.04;BaseQRankSum=0.052;DP=118;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=21.04;ReadPosRankSum=0.754;SOR=0.593;VarDP=50 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:65:99:65:.:.:0,1315 0|1:22,28:50:99:.:0|1:2749501_T_C:1052,0,828:2749501:14,8,17,11 +chrX 2750077 . T C 848 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=7.32;BaseQRankSum=-0.869;DP=124;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=7.32;ReadPosRankSum=0.851;SOR=0.753;VarDP=120 GT:AD:DP:GQ:PL:SB 1:30,35:65:99:135,0:13,17,16,19 0/1:27,28:55:99:743,0,774:16,11,17,11 +chrX 2750126 . G A 910 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=9.89;BaseQRankSum=-0.51;DP=99;ExcessHet=0.0000;FS=3.853;MQ=60.00;MQRankSum=0;QD=9.89;ReadPosRankSum=0.261;SOR=0.758;VarDP=95 GT:AD:DP:GQ:PL:SB 1:20,31:51:99:327,0:7,13,12,19 0/1:22,22:44:99:613,0,608:12,10,17,5 +chrX 2750696 . A ACACACATGCACACG 1308.97 . AC=2;AF=0.667;AN=3;AS_AltDP=64;AS_QD=12.04;BaseQRankSum=0.248;DP=147;ExcessHet=0.0000;FS=0.714;MQ=60.00;MQRankSum=0;QD=12.04;ReadPosRankSum=-0.319;SOR=0.581;VarDP=112 GT:AD:DP:GQ:PL:SB 1:28,29:57:30:30,0:15,13,16,13 0/1:20,35:55:99:1318,0,706:12,8,18,17 +chrX 2751109 . CA C 416.97 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=10.13;BaseQRankSum=1.815;DP=125;ExcessHet=0.0000;FS=1.223;MQ=60.00;MQRankSum=0;QD=10.13;ReadPosRankSum=-0.438;SOR=1.027;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:70:99:70:0,744 0/1:23,22:45:99:.:456,0,481:9,13,7,14 +chrX 2751622 . T TGTC 1598.97 . AC=2;AF=0.667;AN=3;AS_AltDP=66;AS_QD=12.70;BaseQRankSum=2.886;DP=138;ExcessHet=0.0000;FS=3.160;MQ=57.86;MQRankSum=-2.456;QD=12.70;ReadPosRankSum=0.56;SOR=0.814;VarDP=129 GT:AD:DP:GQ:PL:SB 1:25,37:62:99:550,0:13,12,13,24 0/1:38,29:67:99:1088,0,1508:20,18,17,12 +chrX 2751904 . C T 879 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=13.17;BaseQRankSum=-0.811;DP=140;ExcessHet=0.0000;FS=12.623;MQ=59.52;MQRankSum=-0.986;QD=13.17;ReadPosRankSum=0.138;SOR=0.812;VarDP=69 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:99:68:0,1404 0/1:35,34:69:99:.:909,0,979:23,12,14,20 +chrX 2752500 . G A 686 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=14.04;BaseQRankSum=-1.333;DP=122;ExcessHet=0.0000;FS=2.418;MQ=41.50;MQRankSum=1.001;QD=14.04;ReadPosRankSum=-1.642;SOR=0.370;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:99:68:0,1404 0/1:24,27:51:99:.:716,0,648:9,15,13,14 +chrX 2752551 . G T 1705 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=32.13;DP=123;ExcessHet=0.0000;FS=0.000;MQ=45.25;QD=32.13;SOR=1.022;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:99:68:0,1404 1/1:0,54:54:99:.:1735,162,0:0,0,23,31 +chrX 2752631 . A G 702 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=13.81;BaseQRankSum=3.19;DP=121;ExcessHet=0.0000;FS=5.608;MQ=50.84;MQRankSum=-0.716;QD=13.81;ReadPosRankSum=0.721;SOR=1.115;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:99:68:0,1404 0/1:27,26:53:99:.:732,0,654:15,12,10,16 +chrX 2753244 . G T 555 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=11.25;BaseQRankSum=-2.246;DP=122;ExcessHet=0.0000;FS=0.000;MQ=54.20;MQRankSum=0.913;QD=11.25;ReadPosRankSum=0.661;SOR=0.602;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:99:68:0,1404 0/1:28,24:52:99:.:585,0,805:17,11,14,10 +chrX 2753325 . A G 431 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=8.09;BaseQRankSum=-1.945;DP=120;ExcessHet=0.0000;FS=5.625;MQ=59.05;MQRankSum=2.158;QD=8.09;ReadPosRankSum=1.283;SOR=1.329;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 1:21,36:57:99:.:461,0:11,10,13,23 0/0:.:61:85:61:0,85,1276 +chrX 2753627 . G C 369 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=8.49;BaseQRankSum=-3.291;DP=107;ExcessHet=0.0000;FS=4.269;MQ=60.00;MQRankSum=0;QD=8.49;ReadPosRankSum=1.712;SOR=1.370;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:56:99:56:0,1339 0/1:27,20:47:99:.:399,0,767:14,13,7,13 +chrX 2753727 . T C 508 . AC=2;AF=0.667;AN=3;AS_AltDP=44;AS_QD=5.27;BaseQRankSum=0.476;DP=108;ExcessHet=0.0000;FS=3.679;MQ=57.06;MQRankSum=-2.975;QD=5.27;ReadPosRankSum=-0.332;SOR=0.942;VarDP=102 GT:AD:DP:GQ:PL:SB 1:22,27:49:98:98,0:9,13,17,10 0/1:36,17:53:99:440,0,1032:19,17,8,9 +chrX 2753912 . G A 710 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=13.21;BaseQRankSum=-0.049;DP=118;ExcessHet=0.0000;FS=0.000;MQ=59.85;MQRankSum=-2.037;QD=13.21;ReadPosRankSum=1.033;SOR=0.836;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,537 0/1:28,28:56:99:.:740,0,755:14,14,15,13 +chrX 2754174 . C G 896 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=13.82;BaseQRankSum=-1.085;DP=131;ExcessHet=0.0000;FS=18.309;MQ=59.78;MQRankSum=0.635;QD=13.82;ReadPosRankSum=0.352;SOR=1.882;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,537 0/1:31,36:67:99:.:926,0,837:13,18,26,10 +chrX 2754651 . G A 973 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=14.75;BaseQRankSum=2.069;DP=130;ExcessHet=0.0000;FS=2.032;MQ=57.27;MQRankSum=-0.648;QD=14.75;ReadPosRankSum=0.406;SOR=1.061;VarDP=68 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,537 0/1:32,36:68:99:.:1003,0,803:16,16,15,21 +chrX 2755057 . C T 663 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=16.50;BaseQRankSum=-0.075;DP=107;ExcessHet=0.0000;FS=2.748;MQ=51.27;MQRankSum=-5.376;QD=16.50;ReadPosRankSum=0.372;SOR=1.074;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,537 0/1:17,25:42:99:.:693,0,419:8,9,15,10 +chrX 2755162 . G A 668 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=13.96;BaseQRankSum=-3.012;DP=112;ExcessHet=0.0000;FS=4.001;MQ=57.21;MQRankSum=-2.524;QD=13.96;ReadPosRankSum=-2.035;SOR=0.310;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:61:99:61:0,537 0/1:23,27:50:99:.:698,0,649:15,8,14,13 +chrX 2755881 . T C 864 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=7.21;BaseQRankSum=1.925;DP=131;ExcessHet=0.0000;FS=3.193;MQ=49.01;MQRankSum=-7.071;QD=7.21;ReadPosRankSum=0.712;SOR=0.658;VarDP=124 GT:AD:DP:GQ:PL:SB 1:30,32:62:99:117,0:15,15,11,21 0/1:31,31:62:99:777,0,872:18,13,19,12 +chrX 2756235 . C T 692 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=12.24;BaseQRankSum=-0.192;DP=125;ExcessHet=0.0000;FS=9.185;MQ=58.86;MQRankSum=-2.433;QD=12.24;ReadPosRankSum=-0.662;SOR=0.871;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:99:65:0,1538 0/1:32,27:59:99:.:722,0,880:20,12,11,16 +chrX 2756706 . G C 1151 . AC=2;AF=0.667;AN=3;AS_AltDP=67;AS_QD=10.01;BaseQRankSum=2.6;DP=121;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=10.01;ReadPosRankSum=1.459;SOR=0.714;VarDP=118 GT:AD:DP:GQ:PL:SB 1:27,32:59:99:207,0:15,12,19,13 0/1:24,35:59:99:974,0,531:16,8,22,13 +chrX 2757421 . G C 1330 . AC=2;AF=0.667;AN=3;AS_AltDP=40;AS_QD=34.00;DP=90;ExcessHet=0.0000;FS=0.000;MQ=59.93;QD=34.00;SOR=1.022;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:50:30:47:0,30 1/1:0,40:40:99:.:1360,120,0:0,0,17,23 +chrX 2757971 . CAAAAAAAAAAAAA C,CAAAAAA 920.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=15,12;AS_QD=34.63,31.00;DP=92;ExcessHet=0.0000;FS=3.332;MQ=54.65;MQRankSum=-0.756;QD=34.29;SOR=0.568;VarDP=28 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:50:30:47:0,30,30 1/2:1,15,12:28:99:.:960,406,765,557,0,570:0,1,15,12 +chrX 2758119 . T C 1198 . AC=2;AF=0.667;AN=3;AS_AltDP=67;AS_QD=10.68;BaseQRankSum=-1.256;DP=118;ExcessHet=0.0000;FS=0.000;MQ=58.96;MQRankSum=3.499;QD=10.68;ReadPosRankSum=0.48;SOR=0.669;VarDP=115 GT:AD:DP:GQ:PL:SB 1:21,39:60:99:515,0:11,10,24,15 0/1:27,28:55:99:713,0,733:18,9,16,12 +chrX 2758874 . C G 3969 . AC=3;AF=1.00;AN=3;AS_AltDP=129;AS_QD=31.00;DP=134;ExcessHet=0.0000;FS=0.000;MQ=59.18;QD=31.00;SOR=0.840;VarDP=129 GT:AD:DP:GQ:PL:SB 1:0,59:59:99:1833,0:0,0,29,30 1/1:0,70:70:99:2166,208,0:0,0,40,30 +chrX 2758956 . T TTATC 4951.97 . AC=3;AF=1.00;AN=3;AS_AltDP=113;AS_QD=26.92;DP=128;ExcessHet=0.0000;FS=0.000;MQ=59.96;QD=44.17;SOR=1.129;VarDP=113 GT:AD:DP:GQ:PL:SB 1:0,52:52:99:2309,0:0,0,32,20 1/1:0,61:61:99:2682,183,0:0,0,35,26 +chrX 2759032 . GTATC G 3780.97 . AC=3;AF=1.00;AN=3;AS_AltDP=98;AS_QD=30.07;BaseQRankSum=2.46;DP=114;ExcessHet=0.0000;FS=9.839;MQ=57.35;MQRankSum=1.849;QD=37.82;ReadPosRankSum=1.288;SOR=0.365;VarDP=101 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:3,41:44:99:.:.:1316,0:.:0,3,22,19 1|1:0,57:57:99:0|1:2759032_GTATC_G:2504,172,0:2759032:0,0,31,26 +chrX 2759050 . G A 4769 . AC=3;AF=1.00;AN=3;AS_AltDP=113;AS_QD=34.61;BaseQRankSum=2.34;DP=116;ExcessHet=0.0000;FS=3.385;MQ=56.30;MQRankSum=1.241;QD=42.10;ReadPosRankSum=1.615;SOR=0.525;VarDP=114 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,53:53:99:.:.:2220,0:.:0,0,26,22 1|1:1,60:61:99:0|1:2759032_GTATC_G:2579,174,0:2759032:0,1,33,27 +chrX 2759093 . G A 5740 . AC=3;AF=1.00;AN=3;AS_AltDP=133;AS_QD=30.59;DP=135;ExcessHet=0.0000;FS=0.000;MQ=56.58;QD=43.38;SOR=0.836;VarDP=133 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,72:72:99:.:.:3128,0:.:0,0,36,36 1|1:0,61:61:99:0|1:2759093_G_A:2642,184,0:2759093:0,0,35,26 +chrX 2759094 . T C 133 . AC=1;AF=0.333;AN=3;AS_AltDP=39;AS_QD=2.26;BaseQRankSum=-0.545;DP=134;ExcessHet=0.0000;FS=1.962;MQ=57.08;MQRankSum=4.325;QD=2.26;ReadPosRankSum=-0.95;SOR=0.718;VarDP=72 GT:AD:DP:GQ:MIN_DP:PL:SB 1:33,39:72:99:.:163,0:18,15,18,21 0/0:.:61:99:61:0,120,1800 +chrX 2759113 . A T 6063 . AC=3;AF=1.00;AN=3;AS_AltDP=137;AS_QD=33.12;DP=138;ExcessHet=0.0000;FS=0.000;MQ=56.72;QD=44.47;SOR=0.768;VarDP=137 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,72:72:99:.:.:3209,0:.:0,0,34,38 1|1:0,65:65:99:0|1:2759093_G_A:2884,196,0:2759093:0,0,37,28 +chrX 2759121 . T C 6129 . AC=3;AF=1.00;AN=3;AS_AltDP=138;AS_QD=29.87;DP=140;ExcessHet=0.0000;FS=0.000;MQ=56.86;QD=44.63;SOR=0.722;VarDP=138 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,72:72:99:.:.:3220,0:.:0,0,33,39 1|1:0,66:66:99:0|1:2759093_G_A:2939,199,0:2759093:0,0,35,31 +chrX 2759132 . G A 2483 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=30.96;DP=134;ExcessHet=0.0000;FS=0.000;MQ=55.86;QD=44.09;SOR=0.960;VarDP=57 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:77:9:77:.:.:0,9 1|1:0,57:57:99:.:0|1:2759093_G_A:2513,172,0:2759093:0,0,32,25 +chrX 2759819 . A T 263 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=4.51;BaseQRankSum=-0.489;DP=123;ExcessHet=0.0000;FS=8.660;MQ=52.53;MQRankSum=-6.885;QD=4.51;ReadPosRankSum=-0.371;SOR=0.921;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 1:28,37:65:99:.:293,0:11,17,22,15 0/0:.:56:99:56:0,103,1420 +chrX 2759955 . T TCTGCATGTGGC 2077.97 . AC=2;AF=0.667;AN=3;AS_AltDP=80;AS_QD=15.34;BaseQRankSum=0.605;DP=143;ExcessHet=0.0000;FS=7.802;MQ=59.99;MQRankSum=0;QD=15.34;ReadPosRankSum=0.355;SOR=0.314;VarDP=138 GT:AD:DP:GQ:PL:SB 1:28,45:73:99:738,0:19,9,20,25 0/1:30,35:65:99:1379,0,1155:18,12,21,14 +chrX 2760579 . C CA 503.97 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=15.97;BaseQRankSum=0.435;DP=81;ExcessHet=0.0000;FS=0.000;MQ=59.48;MQRankSum=-0.78;QD=15.97;ReadPosRankSum=0.384;SOR=0.593;VarDP=34 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:42:46:41:0,46 0/1:6,28:34:44:.:543,0,44:4,2,17,11 +chrX 2760734 . CAAA CAA,C 1074.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=19,24;AS_QD=9.76,24.44;BaseQRankSum=0.713;DP=103;ExcessHet=0.0000;FS=24.312;MQ=59.20;MQRankSum=-0.306;QD=21.02;ReadPosRankSum=0.718;SOR=1.820;VarDP=53 GT:AD:DP:GQ:PL:SB 1:6,19,0:25:99:283,0,386:2,4,15,4 0/2:4,0,24:28:7:831,843,923,0,79,7:0,4,16,8 +chrX 2761052 . T C 253 . AC=1;AF=0.333;AN=3;AS_AltDP=41;AS_QD=3.88;BaseQRankSum=-0.731;DP=124;ExcessHet=0.0000;FS=1.994;MQ=60.00;MQRankSum=0;QD=3.88;ReadPosRankSum=-0.751;SOR=1.021;VarDP=73 GT:AD:DP:GQ:MIN_DP:PL:SB 1:32,41:73:99:.:283,0:14,18,15,26 0/0:.:52:38:50:0,38,1067 +chrX 2761908 . G T 1697 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=32.58;DP=118;ExcessHet=0.0000;FS=0.000;MQ=58.23;QD=32.58;SOR=0.981;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,1425 1/1:0,53:53:99:.:1727,159,0:0,0,30,23 +chrX 2762116 . G A 1895 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=33.77;DP=121;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.77;SOR=0.877;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,1425 1/1:0,57:57:99:.:1925,171,0:0,0,26,31 +chrX 2762144 . C T 1850 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=34.18;DP=119;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=34.18;SOR=0.884;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:64:99:64:0,1425 1/1:0,55:55:99:.:1880,165,0:0,0,25,30 +chrX 2762258 . T G 1977 . AC=1;AF=0.333;AN=3;AS_AltDP=62;AS_QD=32.37;DP=122;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.37;SOR=0.826;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,62:62:99:.:2007,0:0,0,33,29 0/0:.:59:99:59:0,101,1583 +chrX 2762730 . A G 2023 . AC=1;AF=0.333;AN=3;AS_AltDP=64;AS_QD=32.08;DP=128;ExcessHet=0.0000;FS=0.000;MQ=59.76;QD=32.08;SOR=0.892;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,64:64:99:.:2053,0:0,0,35,29 0/0:.:59:99:59:0,101,1583 +chrX 2763471 . A G 3067 . AC=3;AF=1.00;AN=3;AS_AltDP=100;AS_QD=30.97;DP=107;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.97;SOR=1.609;VarDP=100 GT:AD:DP:GQ:PL:SB 1:0,47:47:99:1426,0:0,0,31,16 1/1:0,53:53:99:1671,158,0:0,0,36,17 +chrX 2763510 . C G 3078 . AC=3;AF=1.00;AN=3;AS_AltDP=94;AS_QD=33.06;DP=97;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.06;SOR=1.396;VarDP=94 GT:AD:DP:GQ:PL:SB 1:0,47:47:99:1564,0:0,0,28,19 1/1:0,47:47:99:1544,141,0:0,0,32,15 +chrX 2763790 . T A 1647 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=32.88;DP=110;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.88;SOR=0.813;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:58:99:58:0,1534 1/1:0,51:51:99:.:1677,153,0:0,0,27,24 +chrX 2763837 . A G 1548 . AC=2;AF=0.667;AN=3;AS_AltDP=48;AS_QD=32.88;DP=106;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.88;SOR=0.866;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:58:99:58:0,1534 1/1:0,48:48:99:.:1578,143,0:0,0,26,22 +chrX 2763891 . T G 152 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=2.98;BaseQRankSum=0.642;DP=117;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=2.98;ReadPosRankSum=0.007;SOR=0.693;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 1:28,33:61:99:.:182,0:17,11,20,13 0/0:.:54:99:54:0,113,1687 +chrX 2763925 . G C 1881 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=32.95;DP=127;ExcessHet=0.0000;FS=0.000;MQ=59.97;QD=32.95;SOR=0.836;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:69:99:69:0,1800 1/1:0,58:58:99:.:1911,174,0:0,0,27,31 +chrX 2763977 . G A 4010 . AC=3;AF=1.00;AN=3;AS_AltDP=122;AS_QD=33.11;DP=126;ExcessHet=0.0000;FS=0.000;MQ=58.61;QD=33.11;SOR=0.726;VarDP=122 GT:AD:DP:GQ:PL:SB 1:0,61:61:99:1980,0:0,0,34,27 1/1:0,61:61:99:2060,183,0:0,0,28,33 +chrX 2764108 . T C 3662 . AC=3;AF=1.00;AN=3;AS_AltDP=113;AS_QD=32.67;DP=120;ExcessHet=0.0000;FS=0.000;MQ=54.95;QD=32.67;SOR=0.903;VarDP=113 GT:AD:DP:GQ:PL:SB 1:0,71:71:99:2328,0:0,0,31,40 1/1:0,42:42:99:1364,126,0:0,0,20,22 +chrX 2764135 . T G 4145 . AC=3;AF=1.00;AN=3;AS_AltDP=126;AS_QD=32.87;BaseQRankSum=2.534;DP=131;ExcessHet=0.0000;FS=3.479;MQ=57.25;MQRankSum=-0.337;QD=32.87;ReadPosRankSum=-0.033;SOR=0.589;VarDP=127 GT:AD:DP:GQ:PL:SB 1:0,75:75:99:2509,0:0,0,32,43 1/1:1,51:52:99:1666,146,0:1,0,24,27 +chrX 2764778 . T C 148 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=3.30;BaseQRankSum=-0.883;DP=117;ExcessHet=0.0000;FS=2.329;MQ=59.88;MQRankSum=-0.857;QD=3.30;ReadPosRankSum=1.054;SOR=0.407;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 1:24,30:54:99:.:178,0:15,9,16,14 0/0:.:60:86:60:0,86,1443 +chrX 2764873 . A T 990 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=22.17;BaseQRankSum=0.016;DP=100;ExcessHet=0.0000;FS=1.143;MQ=59.64;MQRankSum=-0.833;QD=22.17;ReadPosRankSum=1.611;SOR=0.494;VarDP=46 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:53:99:53:.:.:0,898 0|1:20,26:46:99:.:0|1:2764873_A_T:1020,0,751:2764873:8,12,12,14 +chrX 2764874 . T C 990 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=22.17;BaseQRankSum=0.928;DP=99;ExcessHet=0.0000;FS=1.143;MQ=59.64;MQRankSum=-0.833;QD=22.17;ReadPosRankSum=1.386;SOR=0.494;VarDP=46 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:53:99:53:.:.:0,898 0|1:20,26:46:99:.:0|1:2764873_A_T:1020,0,751:2764873:8,12,12,14 +chrX 2765041 . C CA,CAA 430.97 . AC=2,0;AF=0.667,0.00;AN=3;AS_AltDP=21,5;AS_QD=13.43,16.32;BaseQRankSum=-0.962;DP=83;ExcessHet=0.0000;FS=1.302;MQ=59.35;MQRankSum=-1.502;QD=11.75;ReadPosRankSum=-1.007;SOR=0.661;VarDP=40 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,9,5:14:43:.:.:353,0,43:.:0,0,7,7 0|1:14,12,0:26:99:0|1:2765041_C_CA:117,0,360,159,394,553:2765041:8,6,5,7 +chrX 2765057 . A AG 418.97 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=12.38;BaseQRankSum=0.363;DP=78;ExcessHet=0.0000;FS=4.887;MQ=58.87;MQRankSum=1.765;QD=12.38;ReadPosRankSum=-0.547;SOR=1.453;VarDP=37 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:38:99:38:.:.:0,945 0|1:19,18:37:99:.:1|0:2765041_C_CA:458,0,446:2765041:9,10,12,6 +chrX 2765124 . G A 445 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=11.31;BaseQRankSum=0.74;DP=83;ExcessHet=0.0000;FS=1.249;MQ=59.69;MQRankSum=-0.138;QD=11.31;ReadPosRankSum=-0.46;SOR=1.049;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:38:99:38:0,945 0/1:24,18:42:99:.:475,0,923:14,10,12,6 +chrX 2765152 . C G 2211 . AC=2;AF=0.667;AN=3;AS_AltDP=65;AS_QD=26.36;BaseQRankSum=-0.344;DP=89;ExcessHet=0.0000;FS=2.118;MQ=59.69;MQRankSum=0.197;QD=26.36;ReadPosRankSum=0.381;SOR=0.453;VarDP=85 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,40:41:99:.:.:1279,0:.:0,1,19,21 0|1:19,25:44:99:0|1:2765152_C_G:962,0,697:2765152:12,7,15,10 +chrX 2765185 . A C 1228 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=22.07;BaseQRankSum=-0.649;DP=106;ExcessHet=0.0000;FS=1.001;MQ=59.87;MQRankSum=-0.849;QD=22.07;ReadPosRankSum=0.305;SOR=0.564;VarDP=57 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:48:99:48:.:.:0,487 0|1:25,32:57:99:.:0|1:2765152_C_G:1258,0,953:2765152:15,10,18,14 +chrX 2765200 . A G 984 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=19.50;BaseQRankSum=0.404;DP=103;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=19.50;ReadPosRankSum=0.471;SOR=0.852;VarDP=52 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:48:99:48:.:.:0,487 0|1:26,26:52:99:.:0|1:2765152_C_G:1014,0,952:2765152:15,11,16,10 +chrX 2765220 . G A 639 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=13.38;BaseQRankSum=0.265;DP=98;ExcessHet=0.0000;FS=4.281;MQ=60.00;MQRankSum=0;QD=13.38;ReadPosRankSum=-0.067;SOR=1.380;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 1:17,33:50:99:.:669,0:9,8,22,11 0/0:.:47:99:47:0,111,1300 +chrX 2765257 . G A 1282 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=12.99;BaseQRankSum=1.249;DP=101;ExcessHet=0.0000;FS=3.736;MQ=60.00;MQRankSum=0;QD=12.99;ReadPosRankSum=0.53;SOR=0.597;VarDP=101 GT:AD:DP:GQ:PL:SB 1:19,35:54:99:719,0:8,11,22,13 0/1:25,22:47:99:593,0,922:11,14,8,14 +chrX 2765283 . A G 1084 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=11.48;BaseQRankSum=-0.039;DP=97;ExcessHet=0.0000;FS=9.939;MQ=60.00;MQRankSum=0;QD=11.48;ReadPosRankSum=0.928;SOR=0.645;VarDP=97 GT:AD:DP:GQ:PL:SB 1:21,32:53:99:526,0:9,12,20,12 0/1:22,22:44:99:588,0,828:7,15,10,12 +chrX 2765376 . GGGAAGGAA G,GGGAAGGAAGGAAGGAAGGAAGGAAGGAA 1723.97 . AC=2,0;AF=0.667,0.00;AN=3;AS_AltDP=47,19;AS_QD=26.31,20.36;BaseQRankSum=0.708;DP=108;ExcessHet=0.0000;FS=0.974;MQ=59.36;MQRankSum=0;QD=20.50;ReadPosRankSum=-0.966;SOR=0.598;VarDP=86 GT:AD:DP:GQ:PL:SB 1:0,29,19:48:99:1103,0,309:0,0,23,25 0/1:20,18,0:38:99:660,0,785,721,840,1560:11,9,9,9 +chrX 2765769 . A G 1033 . AC=2;AF=0.667;AN=3;AS_AltDP=70;AS_QD=7.59;BaseQRankSum=0.995;DP=143;ExcessHet=0.0000;FS=2.135;MQ=60.00;MQRankSum=0;QD=7.59;ReadPosRankSum=1.071;SOR=0.941;VarDP=140 GT:AD:DP:GQ:PL:SB 1:32,40:72:99:274,0:18,14,21,19 0/1:38,30:68:99:789,0,1001:17,21,18,12 +chrX 2765796 . C CATT 250.97 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=4.26;BaseQRankSum=-1.662;DP=139;ExcessHet=0.0000;FS=4.812;MQ=60.00;MQRankSum=0;QD=4.26;ReadPosRankSum=2.113;SOR=0.796;VarDP=68 GT:AD:DP:GQ:MIN_DP:PL:SB 1:31,37:68:99:.:290,0:13,18,21,16 0/0:.:61:99:61:0,120,1800 +chrX 2766150 . C CT 378.97 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=8.36;BaseQRankSum=-1.572;DP=130;ExcessHet=0.0000;FS=8.135;MQ=60.00;MQRankSum=0;QD=8.36;ReadPosRankSum=-0.782;SOR=1.170;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:74:99:74:0,1800 0/1:28,22:50:99:.:418,0,652:11,17,14,8 +chrX 2766176 . C G 1525 . AC=2;AF=0.667;AN=3;AS_AltDP=76;AS_QD=12.64;BaseQRankSum=-1.078;DP=129;ExcessHet=0.0000;FS=0.000;MQ=59.75;MQRankSum=-0.662;QD=12.64;ReadPosRankSum=1.24;SOR=0.653;VarDP=123 GT:AD:DP:GQ:PL:SB 1:23,48:71:99:799,0:12,11,24,24 0/1:24,28:52:99:756,0,657:11,13,14,14 +chrX 2766287 . C T 1352 . AC=2;AF=0.667;AN=3;AS_AltDP=68;AS_QD=11.42;BaseQRankSum=1.377;DP=127;ExcessHet=0.0000;FS=0.000;MQ=59.81;MQRankSum=0;QD=11.42;ReadPosRankSum=1.036;SOR=0.698;VarDP=121 GT:AD:DP:GQ:PL:SB 1:19,38:57:99:605,0:9,10,15,23 0/1:34,30:64:99:777,0,825:16,18,17,13 +chrX 2766503 . TG T 2636.97 . AC=3;AF=1.00;AN=3;AS_AltDP=84;AS_QD=31.86;DP=90;ExcessHet=0.0000;FS=0.000;MQ=59.95;QD=31.86;SOR=1.139;VarDP=84 GT:AD:DP:GQ:PL:SB 1:0,34:34:99:1083,0:0,0,14,20 1/1:0,50:50:99:1593,150,0:0,0,20,30 +chrX 2766557 . CTTTTT C,CTTTT,CT 974.97 . AC=1,1,1;AF=0.333,0.333,0.333;AN=3;AS_AltDP=22,4,12;AS_QD=32.70,7.20,23.75;BaseQRankSum=-0.611;DP=98;ExcessHet=0.0000;FS=0.000;MQ=59.31;MQRankSum=0;QD=26.00;ReadPosRankSum=0.802;SOR=0.527;VarDP=39 GT:AD:DP:GQ:PL:SB 2:1,8,4,0:13:36:36,115,0,266:1,0,6,6 1/3:0,14,0,12:26:99:978,234,226,784,267,748,281,0,287,203:0,0,18,8 +chrX 2766658 . G A 1551 . AC=3;AF=1.00;AN=3;AS_AltDP=61;AS_QD=20.80;BaseQRankSum=2.189;DP=83;ExcessHet=0.0000;FS=1.078;MQ=55.39;MQRankSum=0.386;QD=20.80;ReadPosRankSum=-0.805;SOR=0.877;VarDP=76 GT:AD:DP:GQ:PL:SB 1:15,22:37:99:291,0:7,8,10,12 1/1:0,39:39:99:1290,117,0:0,0,16,23 +chrX 2766748 . C G 3668 . AC=3;AF=1.00;AN=3;AS_AltDP=100;AS_QD=30.25;DP=104;ExcessHet=0.0000;FS=0.000;MQ=47.68;QD=36.98;SOR=0.693;VarDP=100 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,43:43:99:.:.:1440,0:.:0,0,22,21 1|1:0,57:57:99:0|1:2766748_C_G:2258,172,0:2766748:0,0,28,29 +chrX 2766756 . G A 844 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=15.07;BaseQRankSum=1.336;DP=110;ExcessHet=0.0000;FS=1.012;MQ=47.85;MQRankSum=-1.732;QD=15.07;ReadPosRankSum=1.057;SOR=0.701;VarDP=58 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:48:99:48:.:.:0,1354 0|1:26,32:58:99:.:0|1:2766748_C_G:874,0,635:2766748:14,12,15,17 +chrX 2766801 . G A 35 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=1.33;BaseQRankSum=1.178;DP=116;ExcessHet=0.0000;FS=2.425;MQ=53.32;MQRankSum=-1.949;QD=1.33;ReadPosRankSum=-0.27;SOR=0.832;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 1:24,25:49:65:.:65,0:11,13,14,11 0/0:.:64:99:64:0,120,1800 +chrX 2767106 . G A 967 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=15.34;BaseQRankSum=0.176;DP=120;ExcessHet=0.0000;FS=6.553;MQ=60.00;MQRankSum=0;QD=15.34;ReadPosRankSum=0.928;SOR=1.202;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:55:4:55:0,4 0/1:28,37:65:99:.:997,0,674:13,15,23,14 +chrX 2767213 . T C 5618 . AC=3;AF=1.00;AN=3;AS_AltDP=128;AS_QD=32.07;DP=132;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.13;SOR=0.790;VarDP=128 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,60:60:99:.:.:2654,0:.:0,0,33,27 1|1:0,68:68:99:0|1:2767213_T_C:2994,205,0:2767213:0,0,34,34 +chrX 2767220 . G A 5495 . AC=3;AF=1.00;AN=3;AS_AltDP=124;AS_QD=28.40;DP=126;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.56;SOR=0.725;VarDP=124 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,59:59:99:.:.:2631,0:.:0,0,31,28 1|1:0,65:65:99:0|1:2767213_T_C:2894,196,0:2767213:0,0,32,33 +chrX 2767767 . G A 1086 . AC=2;AF=0.667;AN=3;AS_AltDP=64;AS_QD=9.00;BaseQRankSum=1.673;DP=126;ExcessHet=0.0000;FS=2.251;MQ=60.00;MQRankSum=0;QD=9.00;ReadPosRankSum=1.146;SOR=0.642;VarDP=124 GT:AD:DP:GQ:PL:SB 1:25,31:56:99:213,0:16,9,13,18 0/1:35,33:68:99:903,0,931:16,19,18,15 +chrX 2768078 . C T 961 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=15.73;BaseQRankSum=-0.722;DP=132;ExcessHet=0.0000;FS=5.218;MQ=57.36;MQRankSum=-3.314;QD=15.73;ReadPosRankSum=0.625;SOR=1.440;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,351 0/1:27,36:63:99:.:991,0,689:13,14,12,24 +chrX 2768124 . A G 752 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=13.72;BaseQRankSum=1.497;DP=127;ExcessHet=0.0000;FS=3.724;MQ=57.98;MQRankSum=-4.671;QD=13.72;ReadPosRankSum=0.807;SOR=1.287;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,351 0/1:29,28:57:99:.:782,0,759:14,15,10,18 +chrX 2768461 . C T 1334 . AC=1;AF=0.333;AN=3;AS_AltDP=47;AS_QD=18.68;BaseQRankSum=0.181;DP=141;ExcessHet=0.0000;FS=2.040;MQ=59.91;MQRankSum=-0.715;QD=18.68;ReadPosRankSum=-0.161;SOR=0.499;VarDP=73 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,351 0/1:26,47:73:99:.:1364,0,640:15,11,23,24 +chrX 2768545 . G A 1055 . AC=1;AF=0.333;AN=3;AS_AltDP=43;AS_QD=13.91;BaseQRankSum=-1.949;DP=145;ExcessHet=0.0000;FS=0.857;MQ=59.89;MQRankSum=-1.266;QD=13.91;ReadPosRankSum=-1.282;SOR=0.564;VarDP=78 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,351 0/1:35,43:78:99:.:1085,0,929:20,15,23,20 +chrX 2768825 . T G 545 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=11.50;BaseQRankSum=0.044;DP=119;ExcessHet=0.0000;FS=2.453;MQ=60.00;MQRankSum=0;QD=11.50;ReadPosRankSum=-0.694;SOR=0.368;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:67:99:67:0,351 0/1:28,22:50:99:.:575,0,758:11,17,11,11 +chrX 2769281 . T C 2369 . AC=3;AF=1.00;AN=3;AS_AltDP=96;AS_QD=19.66;BaseQRankSum=0.788;DP=123;ExcessHet=0.0000;FS=7.351;MQ=60.00;MQRankSum=0;QD=19.66;ReadPosRankSum=0.86;SOR=0.655;VarDP=122 GT:AD:DP:GQ:PL:SB 1:26,32:58:99:249,0:16,10,15,17 1/1:0,64:64:99:2150,192,0:0,0,28,36 +chrX 2769517 . A G 1026 . AC=2;AF=0.667;AN=3;AS_AltDP=70;AS_QD=7.94;BaseQRankSum=0.621;DP=134;ExcessHet=0.0000;FS=3.116;MQ=60.00;MQRankSum=0;QD=7.94;ReadPosRankSum=0.934;SOR=0.569;VarDP=133 GT:AD:DP:GQ:PL:SB 1:32,41:73:99:298,0:17,15,21,20 0/1:31,29:60:99:758,0,837:11,20,15,14 +chrX 2769531 . C T 327 . AC=1;AF=0.333;AN=3;AS_AltDP=40;AS_QD=4.96;BaseQRankSum=2.777;DP=130;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=4.96;ReadPosRankSum=1.82;SOR=0.693;VarDP=72 GT:AD:DP:GQ:MIN_DP:PL:SB 1:32,40:72:99:.:357,0:16,16,20,20 0/0:.:57:99:57:0,110,1434 +chrX 2770248 . A T 859 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=15.88;BaseQRankSum=0.24;DP=127;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=15.88;ReadPosRankSum=-0.239;SOR=0.807;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:68:99:68:0,234 0/1:25,31:56:99:.:889,0,681:13,12,17,14 +chrX 2770410 . T C 613 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=6.99;BaseQRankSum=1.009;DP=95;ExcessHet=0.0000;FS=6.774;MQ=59.82;MQRankSum=1.022;QD=6.99;ReadPosRankSum=1.446;SOR=1.013;VarDP=92 GT:AD:DP:GQ:PL:SB 1:21,24:45:29:29,0:8,13,9,15 0/1:24,23:47:99:614,0,604:17,7,10,13 +chrX 2770501 . T C 733 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=13.87;BaseQRankSum=1.01;DP=114;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.87;ReadPosRankSum=-1.726;SOR=0.631;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:85:59:0,85 0/1:28,27:55:99:.:763,0,778:15,13,14,13 +chrX 2770918 . T C 846 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=11.84;BaseQRankSum=-0.919;DP=136;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=11.84;ReadPosRankSum=-0.277;SOR=0.617;VarDP=74 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:85:59:0,85 0/1:40,34:74:99:.:876,0,1105:22,18,18,16 +chrX 2771109 . T C 1894 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=33.17;DP=117;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.17;SOR=0.836;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:59:85:59:0,85 1/1:0,58:58:99:.:1924,174,0:0,0,27,31 +chrX 2771259 . A T 726 . AC=2;AF=0.667;AN=3;AS_AltDP=48;AS_QD=8.22;BaseQRankSum=1.783;DP=97;ExcessHet=0.0000;FS=1.663;MQ=60.00;MQRankSum=0;QD=8.22;ReadPosRankSum=0.86;SOR=0.534;VarDP=92 GT:AD:DP:GQ:PL:SB 1:24,25:49:99:131,0:13,11,12,13 0/1:20,23:43:99:625,0,555:7,13,12,11 +chrX 2771493 . T A 531 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=4.64;BaseQRankSum=-1.234;DP=126;ExcessHet=0.0000;FS=2.387;MQ=60.00;MQRankSum=0;QD=4.64;ReadPosRankSum=-0.019;SOR=0.461;VarDP=121 GT:AD:DP:GQ:PL:SB 1:33,36:69:13:13,0:12,21,14,22 0/1:30,22:52:99:548,0,847:11,19,11,11 +chrX 2771534 . G A 726 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=14.00;BaseQRankSum=0.07;DP=122;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.00;ReadPosRankSum=-0.398;SOR=0.664;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:76:66:0,76 0/1:26,28:54:99:.:756,0,701:10,16,11,17 +chrX 2771845 . A C 985 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=17.20;BaseQRankSum=0.193;DP=127;ExcessHet=0.0000;FS=7.277;MQ=56.52;MQRankSum=-3.469;QD=17.20;ReadPosRankSum=1.335;SOR=0.748;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:66:76:66:0,76 0/1:24,35:59:99:.:1015,0,612:9,15,20,15 +chrX 2772269 . T C 1209 . AC=2;AF=0.667;AN=3;AS_AltDP=69;AS_QD=9.76;BaseQRankSum=-0.821;DP=131;ExcessHet=0.0000;FS=6.753;MQ=49.15;MQRankSum=-1.188;QD=9.76;ReadPosRankSum=0.478;SOR=0.488;VarDP=127 GT:AD:DP:GQ:PL:SB 1:24,39:63:99:457,0:12,12,22,17 0/1:34,30:64:99:782,0,957:11,23,14,16 +chrX 2772360 . C G 447 . AC=1;AF=0.333;AN=3;AS_AltDP=39;AS_QD=7.45;BaseQRankSum=0.046;DP=130;ExcessHet=0.0000;FS=0.978;MQ=54.44;MQRankSum=-0.468;QD=7.45;ReadPosRankSum=-0.11;SOR=0.790;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 1:25,39:64:99:.:477,0:12,13,21,18 0/0:.:61:99:61:0,110,1406 +chrX 2772967 . G C 1074 . AC=1;AF=0.333;AN=3;AS_AltDP=40;AS_QD=16.48;BaseQRankSum=-0.699;DP=129;ExcessHet=0.0000;FS=3.400;MQ=58.65;MQRankSum=-2.263;QD=16.48;ReadPosRankSum=0.972;SOR=0.373;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:65:34:60:0,34 0/1:27,40:67:99:.:1104,0,717:10,17,19,21 +chrX 2773048 . G A 2537 . AC=2;AF=0.667;AN=3;AS_AltDP=72;AS_QD=28.84;BaseQRankSum=2.591;DP=92;ExcessHet=0.0000;FS=2.503;MQ=58.38;MQRankSum=-1.123;QD=28.84;ReadPosRankSum=-0.472;SOR=1.153;VarDP=89 GT:AD:DP:GQ:PL:SB 1:0,46:46:99:1793,0:0,0,32,14 0/1:17,26:43:99:774,0,422:11,6,20,6 +chrX 2773157 . C CAGGG 693.97 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=20.94;BaseQRankSum=-1.375;DP=91;ExcessHet=0.0000;FS=1.320;MQ=60.00;MQRankSum=0;QD=20.94;ReadPosRankSum=0.133;SOR=0.615;VarDP=35 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:46:99:46:0,239 0/1:16,19:35:99:.:733,0,594:9,7,9,10 +chrX 2773521 . A G 278 . AC=1;AF=0.333;AN=3;AS_AltDP=7;AS_QD=28.87;DP=28;ExcessHet=0.0000;FS=0.000;MQ=54.43;QD=44.00;SOR=0.941;VarDP=7 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,7:7:99:.:308,0:0,0,4,3 0/0:.:23:38:21:0,38,600 +chrX 2773537 . A G 188 . AC=1;AF=0.333;AN=3;AS_AltDP=7;AS_QD=24.22;BaseQRankSum=-0.812;DP=30;ExcessHet=0.0000;FS=0.000;MQ=53.86;MQRankSum=-0.035;QD=24.22;ReadPosRankSum=-0.674;SOR=0.941;VarDP=9 GT:AD:DP:GQ:MIN_DP:PL:SB 1:2,7:9:99:.:218,0:1,1,4,3 0/0:.:23:38:21:0,38,600 +chrX 2773553 . A G 274 . AC=1;AF=0.333;AN=3;AS_AltDP=9;AS_QD=15.20;BaseQRankSum=-0.465;DP=36;ExcessHet=0.0000;FS=0.000;MQ=50.67;MQRankSum=0.917;QD=15.20;ReadPosRankSum=-0.836;SOR=0.473;VarDP=20 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:14:99:14:.:.:0,272 0|1:11,9:20:99:.:0|1:2773553_A_G:304,0,349:2773553:8,3,6,3 +chrX 2773569 . A G 367 . AC=2;AF=0.667;AN=3;AS_AltDP=16;AS_QD=10.73;BaseQRankSum=0.455;DP=39;ExcessHet=0.0000;FS=0.000;MQ=51.92;MQRankSum=0.185;QD=10.73;ReadPosRankSum=0.167;SOR=0.532;VarDP=37 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:5,9:14:99:.:.:152,0:.:3,2,5,4 0|1:16,7:23:99:0|1:2773553_A_G:245,0,414:2773553:11,5,5,2 +chrX 2774018 . A ACC 1125.97 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=12.01;BaseQRankSum=0.43;DP=102;ExcessHet=0.0000;FS=5.104;MQ=60.00;MQRankSum=0;QD=12.01;ReadPosRankSum=-0.416;SOR=0.356;VarDP=97 GT:AD:DP:GQ:PL:SB 1:22,25:47:99:108,0:16,6,15,10 0/1:22,28:50:99:1057,0,820:12,10,13,15 +chrX 2774420 . A G 2614 . AC=1;AF=0.333;AN=3;AS_AltDP=59;AS_QD=33.73;DP=116;ExcessHet=0.0000;FS=0.000;MQ=59.97;QD=44.81;SOR=1.123;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,59:59:99:.:2644,0:0,0,35,24 0/0:.:54:83:54:0,83,1320 +chrX 2774422 . C CCCTGTG 5576.97 . AC=3;AF=1.00;AN=3;AS_AltDP=126;AS_QD=32.79;DP=130;ExcessHet=0.0000;FS=0.000;MQ=59.98;QD=44.57;SOR=1.099;VarDP=126 GT:AD:DP:GQ:PL:SB 1:0,63:63:99:2789,0:0,0,38,25 1/1:0,63:63:99:2827,189,0:0,0,36,27 +chrX 2774556 . T C 4264 . AC=3;AF=1.00;AN=3;AS_AltDP=134;AS_QD=31.57;BaseQRankSum=2.072;DP=139;ExcessHet=0.0000;FS=2.907;MQ=60.00;MQRankSum=0;QD=31.57;ReadPosRankSum=0.983;SOR=0.193;VarDP=136 GT:AD:DP:GQ:PL:SB 1:1,75:76:99:2350,0:0,1,31,44 1/1:1,59:60:99:1944,146,0:0,1,25,34 +chrX 2775134 . A C 3790 . AC=3;AF=1.00;AN=3;AS_AltDP=121;AS_QD=31.31;BaseQRankSum=-0.5;DP=129;ExcessHet=0.0000;FS=3.155;MQ=60.00;MQRankSum=0;QD=31.31;ReadPosRankSum=-0.487;SOR=0.355;VarDP=122 GT:AD:DP:GQ:PL:SB 1:0,65:65:99:2071,0:0,0,36,29 1/1:1,56:57:99:1749,136,0:0,1,27,29 +chrX 2775583 . G A 3967 . AC=3;AF=1.00;AN=3;AS_AltDP=123;AS_QD=31.72;BaseQRankSum=2.732;DP=131;ExcessHet=0.0000;FS=5.588;MQ=60.00;MQRankSum=0;QD=31.72;ReadPosRankSum=0.204;SOR=0.124;VarDP=126 GT:AD:DP:GQ:PL:SB 1:1,67:68:99:2196,0:0,1,28,39 1/1:2,56:58:99:1801,153,0:0,2,22,34 +chrX 2776553 . T G 121 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=2.16;BaseQRankSum=-1.088;DP=131;ExcessHet=0.0000;FS=3.291;MQ=46.11;MQRankSum=0.575;QD=2.16;ReadPosRankSum=-1.981;SOR=1.162;VarDP=70 GT:AD:DP:GQ:MIN_DP:PL:SB 1:32,38:70:99:.:151,0:15,17,14,24 0/0:.:60:62:60:0,62,1220 +chrX 2776608 . A G 2171 . AC=1;AF=0.333;AN=3;AS_AltDP=68;AS_QD=32.37;DP=129;ExcessHet=0.0000;FS=0.000;MQ=52.99;QD=32.37;SOR=0.880;VarDP=68 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,68:68:99:.:2201,0:0,0,31,37 0/0:.:60:62:60:0,62,1220 +chrX 2776765 . G A 409 . AC=1;AF=0.333;AN=3;AS_AltDP=39;AS_QD=6.46;BaseQRankSum=-0.582;DP=129;ExcessHet=0.0000;FS=0.000;MQ=59.88;MQRankSum=1.189;QD=6.46;ReadPosRankSum=-0.62;SOR=0.678;VarDP=68 GT:AD:DP:GQ:MIN_DP:PL:SB 1:29,39:68:99:.:439,0:14,15,19,20 0/0:.:60:62:60:0,62,1220 +chrX 2776772 . C T 318 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=5.12;BaseQRankSum=0.58;DP=129;ExcessHet=0.0000;FS=0.000;MQ=59.88;MQRankSum=1.155;QD=5.12;ReadPosRankSum=-0.335;SOR=0.798;VarDP=68 GT:AD:DP:GQ:MIN_DP:PL:SB 1:30,38:68:99:.:348,0:15,15,18,20 0/0:.:60:62:60:0,62,1220 +chrX 2776845 . TCAA T 385.97 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=8.67;BaseQRankSum=0.364;DP=115;ExcessHet=0.0000;FS=8.103;MQ=60.00;MQRankSum=0;QD=8.67;ReadPosRankSum=0.153;SOR=1.094;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 1:20,29:49:99:.:425,0:8,12,18,11 0/0:.:60:62:60:0,62,1220 +chrX 2777789 . A G 1726 . AC=1;AF=0.333;AN=3;AS_AltDP=56;AS_QD=31.36;DP=118;ExcessHet=0.0000;FS=0.000;MQ=59.46;QD=31.36;SOR=0.841;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,56:56:99:.:1756,0:0,0,30,26 0/0:.:60:62:60:0,62,1220 +chrX 2777819 . A G 2403 . AC=1;AF=0.333;AN=3;AS_AltDP=64;AS_QD=27.07;DP=125;ExcessHet=0.0000;FS=0.000;MQ=59.52;QD=38.02;SOR=0.756;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,64:64:99:.:2433,0:0,0,33,31 0/0:.:60:62:60:0,62,1220 +chrX 2778519 . G A 2004 . AC=1;AF=0.333;AN=3;AS_AltDP=63;AS_QD=32.29;DP=124;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.29;SOR=1.010;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,63:63:99:.:2034,0:0,0,27,36 0/0:.:60:62:60:0,62,1220 +chrX 2779021 . C T 739 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=11.83;BaseQRankSum=1.624;DP=138;ExcessHet=0.0000;FS=0.967;MQ=60.00;MQRankSum=0;QD=11.83;ReadPosRankSum=-0.026;SOR=0.487;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:71:99:71:0,1648 0/1:36,29:65:99:.:769,0,931:14,22,13,16 +chrX 2779330 . TAA T,TA 507.97 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=12,21;AS_QD=19.80,22.79;BaseQRankSum=0.788;DP=93;ExcessHet=0.0000;FS=11.957;MQ=60.00;MQRankSum=0;QD=15.19;ReadPosRankSum=-0.258;SOR=1.074;VarDP=36 GT:AD:DP:GQ:MIN_DP:PL:SB 2:3,12,21:36:99:.:547,250,0:0,3,21,12 0/0:.:48:21:38:0,21,739,21,739,739 +chrX 2779558 . C A 183 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=2.92;BaseQRankSum=2.796;DP=115;ExcessHet=0.0000;FS=3.165;MQ=60.00;MQRankSum=0;QD=2.92;ReadPosRankSum=1.05;SOR=1.101;VarDP=73 GT:AD:DP:GQ:MIN_DP:PL:SB 1:35,38:73:99:.:213,0:16,19,14,24 0/0:.:48:21:38:0,21,739 +chrX 2780288 . AAAG A 181.97 . AC=1;AF=0.333;AN=3;AS_AltDP=41;AS_QD=2.83;BaseQRankSum=-0.711;DP=120;ExcessHet=0.0000;FS=0.858;MQ=60.00;MQRankSum=0;QD=2.83;ReadPosRankSum=-0.355;SOR=0.800;VarDP=78 GT:AD:DP:GQ:MIN_DP:PL:SB 1:37,41:78:99:.:221,0:18,19,22,19 0/0:.:48:21:38:0,21,739 +chrX 2780425 . T TA 56.97 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=1.96;BaseQRankSum=1.233;DP=120;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=1.96;ReadPosRankSum=-1.267;SOR=0.573;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 1:22,27:49:96:.:96,0:9,13,12,15 0/0:.:55:45:55:0,45,1161 +chrX 2780728 . AAG A 1982.97 . AC=1;AF=0.333;AN=3;AS_AltDP=51;AS_QD=24.91;DP=109;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=39.65;SOR=1.436;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,51:51:99:.:2022,0:0,0,18,33 0/0:.:55:45:55:0,45,1161 +chrX 2780913 . G A 1742 . AC=1;AF=0.333;AN=3;AS_AltDP=55;AS_QD=31.64;BaseQRankSum=1.958;DP=114;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=31.64;ReadPosRankSum=-1.3;SOR=0.238;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,55:56:99:.:1772,0:1,0,28,27 0/0:.:55:45:55:0,45,1161 +chrX 2781205 . C A 1954 . AC=2;AF=0.667;AN=3;AS_AltDP=64;AS_QD=22.29;BaseQRankSum=-1.374;DP=94;ExcessHet=0.0000;FS=1.925;MQ=60.00;MQRankSum=0;QD=22.29;ReadPosRankSum=-1.013;SOR=0.951;VarDP=89 GT:AD:DP:GQ:PL:SB 1:0,47:47:99:1559,0:0,0,20,27 0/1:25,17:42:99:425,0,722:12,13,7,10 +chrX 2781514 . C A 1135 . AC=2;AF=0.667;AN=3;AS_AltDP=39;AS_QD=19.42;BaseQRankSum=0.022;DP=61;ExcessHet=0.0000;FS=9.935;MQ=60.00;MQRankSum=0;QD=19.42;ReadPosRankSum=0.475;SOR=1.461;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:764,0:0,0,14,9 0/1:21,16:37:99:401,0,564:9,12,12,4 +chrX 2781604 . G T 1311 . AC=2;AF=0.667;AN=3;AS_AltDP=46;AS_QD=19.72;BaseQRankSum=-0.209;DP=71;ExcessHet=0.0000;FS=2.253;MQ=60.00;MQRankSum=0;QD=19.72;ReadPosRankSum=0.427;SOR=0.399;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,21:21:99:687,0:0,0,12,9 0/1:22,25:47:99:654,0,539:15,7,15,10 +chrX 2782116 . G A 1838 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=19.46;BaseQRankSum=-1.061;DP=100;ExcessHet=0.0000;FS=0.794;MQ=59.85;MQRankSum=0;QD=19.46;ReadPosRankSum=0.502;SOR=0.795;VarDP=96 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:988,0:0,0,17,12 0/1:33,34:67:99:880,0,885:17,16,17,17 +chrX 2782161 . A G 1811 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=20.23;BaseQRankSum=0.453;DP=95;ExcessHet=0.0000;FS=2.967;MQ=59.84;MQRankSum=0;QD=20.23;ReadPosRankSum=-0.984;SOR=0.674;VarDP=91 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:1032,0:0,0,18,13 0/1:29,31:60:99:809,0,729:13,16,15,16 +chrX 2782567 . C T 1944 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=24.68;BaseQRankSum=2.504;DP=81;ExcessHet=0.0000;FS=4.753;MQ=60.00;MQRankSum=0;QD=24.68;ReadPosRankSum=0.465;SOR=0.639;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:1115,0:0,0,10,15 0/1:25,30:55:99:859,0,564:15,10,15,15 +chrX 2782572 . A G 1115 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=29.29;DP=94;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.04;SOR=0.846;VarDP=26 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,26:26:99:.:1145,0:0,0,12,14 0/0:.:68:99:68:0,120,1800 +chrX 2783032 . T C 1689 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=20.46;BaseQRankSum=-0.127;DP=86;ExcessHet=0.0000;FS=1.954;MQ=60.00;MQRankSum=0;QD=20.46;ReadPosRankSum=-0.689;SOR=0.446;VarDP=84 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:867,0:0,0,14,13 0/1:26,31:57:99:852,0,686:15,11,15,16 +chrX 2783144 . C T 1761 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=19.90;BaseQRankSum=-0.22;DP=93;ExcessHet=0.0000;FS=5.733;MQ=60.00;MQRankSum=0;QD=19.90;ReadPosRankSum=1.797;SOR=0.307;VarDP=90 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:829,0:0,0,14,11 0/1:30,35:65:99:962,0,762:19,11,16,19 +chrX 2785350 . T C 1814 . AC=2;AF=0.667;AN=3;AS_AltDP=65;AS_QD=17.90;BaseQRankSum=0.462;DP=105;ExcessHet=0.0000;FS=2.740;MQ=60.00;MQRankSum=0;QD=17.90;ReadPosRankSum=0.309;SOR=1.061;VarDP=103 GT:AD:DP:GQ:PL:SB 1:0,35:35:99:1056,0:0,0,14,21 0/1:38,30:68:99:788,0,1036:17,21,10,20 +chrX 2785459 . A AT 1233.97 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=15.91;BaseQRankSum=0.414;DP=92;ExcessHet=0.0000;FS=0.859;MQ=60.00;MQRankSum=0;QD=15.91;ReadPosRankSum=0.447;SOR=0.775;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:769,0:0,0,11,14 0/1:33,22:55:99:504,0,1257:17,16,11,11 +chrX 2785460 . A T,ATT 1772 . AC=2,0;AF=0.667,0.00;AN=3;AS_AltDP=47,0;AS_QD=23.40,10.00;BaseQRankSum=0.202;DP=91;ExcessHet=0.0000;FS=3.139;MQ=60.00;MQRankSum=0;QD=23.40;ReadPosRankSum=-0.167;SOR=0.633;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:1089,0,857:0,0,11,14 0/1:30,22,0:52:99:713,0,1254,645,1168,1719:17,13,11,11 +chrX 2785503 . A G 1562 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=17.69;BaseQRankSum=-0.786;DP=91;ExcessHet=0.0000;FS=0.000;MQ=59.75;MQRankSum=0;QD=17.69;ReadPosRankSum=0.966;SOR=0.670;VarDP=90 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:1017,0:0,0,15,17 0/1:33,25:58:99:575,0,868:16,17,13,12 +chrX 2785592 . A G 1572 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=16.18;BaseQRankSum=-0.274;DP=104;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=16.18;ReadPosRankSum=-0.743;SOR=0.623;VarDP=99 GT:AD:DP:GQ:PL:SB 1:0,36:36:99:1086,0:0,0,17,19 0/1:41,22:63:99:516,0,1187:19,22,11,11 +chrX 2786260 . C CTTTTTTTTTT 1260.97 . AC=2;AF=0.667;AN=3;AS_AltDP=32;AS_QD=28.89;BaseQRankSum=-0.605;DP=65;ExcessHet=0.0000;FS=1.328;MQ=57.82;MQRankSum=-2.207;QD=28.89;ReadPosRankSum=-0.531;SOR=0.412;VarDP=45 GT:AD:DP:GQ:PL:SB 1:0,17:17:99:740,0:0,0,10,7 0/1:13,15:28:99:560,0,455:9,4,9,6 +chrX 2786294 . G C 616 . AC=2;AF=0.667;AN=3;AS_AltDP=22;AS_QD=15.02;BaseQRankSum=0.553;DP=45;ExcessHet=0.0000;FS=1.194;MQ=59.26;MQRankSum=-1.855;QD=15.02;ReadPosRankSum=-0.112;SOR=0.456;VarDP=43 GT:AD:DP:GQ:PL:SB 1:0,10:10:99:348,0:0,0,6,4 0/1:21,12:33:99:298,0,566:13,8,6,6 +chrX 2786428 . T C 1135 . AC=2;AF=0.667;AN=3;AS_AltDP=43;AS_QD=17.92;BaseQRankSum=-0.681;DP=69;ExcessHet=0.0000;FS=2.197;MQ=59.76;MQRankSum=0;QD=17.92;ReadPosRankSum=0.579;SOR=0.446;VarDP=65 GT:AD:DP:GQ:PL:SB 1:1,23:24:99:657,0:0,1,12,11 0/1:21,20:41:99:508,0,607:8,13,7,13 +chrX 2786515 . A G 1514 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=19.30;BaseQRankSum=0.344;DP=84;ExcessHet=0.0000;FS=3.191;MQ=59.66;MQRankSum=-1.621;QD=19.30;ReadPosRankSum=0.624;SOR=0.828;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:764,0:0,0,11,13 0/1:26,30:56:99:780,0,641:12,14,19,11 +chrX 2786568 . T C 1794 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=20.97;BaseQRankSum=2.377;DP=89;ExcessHet=0.0000;FS=3.159;MQ=59.87;MQRankSum=-1.223;QD=20.97;ReadPosRankSum=-1.276;SOR=1.093;VarDP=87 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:882,0:0,0,14,13 0/1:26,34:60:99:942,0,602:14,12,24,10 +chrX 2786767 . T C 2095 . AC=2;AF=0.667;AN=3;AS_AltDP=73;AS_QD=21.46;BaseQRankSum=0.472;DP=102;ExcessHet=0.0000;FS=0.862;MQ=60.00;MQRankSum=0;QD=21.46;ReadPosRankSum=0.13;SOR=0.591;VarDP=99 GT:AD:DP:GQ:PL:SB 1:0,40:40:99:1265,0:0,0,25,15 0/1:26,33:59:99:860,0,632:14,12,11,22 +chrX 2786948 . T C 1444 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=20.76;BaseQRankSum=1.907;DP=75;ExcessHet=0.0000;FS=7.722;MQ=60.00;MQRankSum=0;QD=20.76;ReadPosRankSum=0.715;SOR=1.574;VarDP=71 GT:AD:DP:GQ:PL:SB 1:1,27:28:99:849,0:1,0,8,19 0/1:18,25:43:99:625,0,496:9,9,9,16 +chrX 2787423 . T A 1657 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=18.74;BaseQRankSum=-0.315;DP=93;ExcessHet=0.0000;FS=2.890;MQ=60.00;MQRankSum=0;QD=18.74;ReadPosRankSum=-2.034;SOR=1.022;VarDP=90 GT:AD:DP:GQ:PL:SB 1:0,22:22:99:735,0:0,0,15,7 0/1:32,36:68:99:952,0,831:17,15,20,16 +chrX 2788855 . T TA 897.97 . AC=2;AF=0.667;AN=3;AS_AltDP=39;AS_QD=14.87;BaseQRankSum=0.928;DP=71;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.87;ReadPosRankSum=0.51;SOR=0.593;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,12:12:99:331,0:0,0,8,4 0/1:24,27:51:99:606,0,518:13,11,12,15 +chrX 2789019 . A G 1712 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=20.02;BaseQRankSum=0.245;DP=88;ExcessHet=0.0000;FS=0.850;MQ=59.94;MQRankSum=0.872;QD=20.02;ReadPosRankSum=-0.346;SOR=0.574;VarDP=87 GT:AD:DP:GQ:PL:SB 1:0,38:38:99:1219,0:0,0,20,18 0/1:29,20:49:99:523,0,841:16,13,10,10 +chrX 2789101 . T C 1611 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=18.65;BaseQRankSum=-1.357;DP=90;ExcessHet=0.0000;FS=0.828;MQ=60.00;MQRankSum=0;QD=18.65;ReadPosRankSum=0.639;SOR=0.808;VarDP=88 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:987,0:0,0,18,12 0/1:31,27:58:99:654,0,817:16,15,13,14 +chrX 2789937 . T C 1609 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=21.85;BaseQRankSum=-0.557;DP=78;ExcessHet=0.0000;FS=7.259;MQ=60.00;MQRankSum=0;QD=21.85;ReadPosRankSum=-0.506;SOR=1.290;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,36:36:99:1141,0:0,0,19,17 0/1:20,19:39:99:498,0,558:9,11,16,3 +chrX 2790505 . G GA 530.97 . AC=2;AF=0.667;AN=3;AS_AltDP=31;AS_QD=11.63;BaseQRankSum=-0.227;DP=71;ExcessHet=0.0000;FS=4.291;MQ=59.92;MQRankSum=-1.035;QD=11.63;ReadPosRankSum=0.452;SOR=1.111;VarDP=49 GT:AD:DP:GQ:PL:SB 1:0,16:16:99:339,0:0,0,11,5 0/1:18,15:33:99:231,0,305:8,10,8,7 +chrX 2790967 . ATAAATT A 2140.97 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=24.49;BaseQRankSum=-0.829;DP=97;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=24.49;ReadPosRankSum=-0.91;SOR=0.665;VarDP=89 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:1070,0:0,0,14,10 0/1:36,29:65:99:1110,0,1411:20,16,15,14 +chrX 2791006 . C T 1040 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=15.29;BaseQRankSum=0.267;DP=103;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=15.29;ReadPosRankSum=-0.448;SOR=0.743;VarDP=70 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,675 0/1:32,38:70:99:.:1070,0,862:19,13,23,15 +chrX 2792465 . G C 1686 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=19.95;BaseQRankSum=2.219;DP=90;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=19.95;ReadPosRankSum=1.275;SOR=0.693;VarDP=86 GT:AD:DP:GQ:PL:SB 1:1,33:34:99:1012,0:0,1,13,20 0/1:27,25:52:99:704,0,668:11,16,10,15 +chrX 2792545 . T TTGTG 2108.97 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=27.54;BaseQRankSum=-0.148;DP=101;ExcessHet=0.0000;FS=2.084;MQ=59.95;MQRankSum=0;QD=27.54;ReadPosRankSum=-1.735;SOR=0.446;VarDP=78 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:1298,0:0,0,18,12 0/1:25,23:48:99:850,0,936:17,8,14,9 +chrX 2792799 . C T 1550 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=18.16;BaseQRankSum=2.098;DP=96;ExcessHet=0.0000;FS=5.882;MQ=60.00;MQRankSum=0;QD=18.16;ReadPosRankSum=0.786;SOR=0.280;VarDP=87 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:744,0:0,0,12,11 0/1:33,31:64:99:836,0,810:10,23,12,19 +chrX 2792954 . C T 1472 . AC=2;AF=0.667;AN=3;AS_AltDP=50;AS_QD=19.76;BaseQRankSum=1.686;DP=79;ExcessHet=0.0000;FS=0.906;MQ=60.00;MQRankSum=0;QD=19.76;ReadPosRankSum=-0.705;SOR=0.560;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:803,0:0,0,12,12 0/1:26,26:52:99:699,0,603:14,12,13,13 +chrX 2793388 . G A 1790 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=23.33;BaseQRankSum=-2.006;DP=78;ExcessHet=0.0000;FS=1.018;MQ=60.00;MQRankSum=0;QD=23.33;ReadPosRankSum=0.68;SOR=0.523;VarDP=78 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:953,0:0,0,11,17 0/1:19,31:50:99:867,0,510:7,12,14,17 +chrX 2793681 . C T 1382 . AC=2;AF=0.667;AN=3;AS_AltDP=48;AS_QD=20.46;BaseQRankSum=1.435;DP=71;ExcessHet=0.0000;FS=5.103;MQ=60.00;MQRankSum=0;QD=20.46;ReadPosRankSum=1.422;SOR=0.462;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:818,0:0,0,11,16 0/1:21,21:42:99:594,0,563:13,8,12,9 +chrX 2794242 . C T 1856 . AC=2;AF=0.667;AN=3;AS_AltDP=65;AS_QD=20.96;BaseQRankSum=2.124;DP=92;ExcessHet=0.0000;FS=10.078;MQ=60.00;MQRankSum=0;QD=20.96;ReadPosRankSum=1.055;SOR=0.469;VarDP=90 GT:AD:DP:GQ:PL:SB 1:1,36:37:99:1132,0:1,0,16,20 0/1:24,29:53:99:754,0,615:16,8,14,15 +chrX 2794971 . T C 2365 . AC=2;AF=0.667;AN=3;AS_AltDP=82;AS_QD=21.38;BaseQRankSum=-1.528;DP=115;ExcessHet=0.0000;FS=6.918;MQ=60.00;MQRankSum=0;QD=21.38;ReadPosRankSum=0.772;SOR=0.378;VarDP=112 GT:AD:DP:GQ:PL:SB 1:0,42:42:99:1299,0:0,0,18,24 0/1:30,40:70:99:1096,0,806:19,11,22,18 +chrX 2795028 . G A 3482 . AC=2;AF=0.667;AN=3;AS_AltDP=84;AS_QD=30.81;BaseQRankSum=-2.891;DP=115;ExcessHet=0.0000;FS=12.257;MQ=60.00;MQRankSum=0;QD=30.81;ReadPosRankSum=-0.617;SOR=0.749;VarDP=114 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,39:39:99:.:.:1755,0:.:0,0,13,26 0|1:30,45:75:99:0|1:2795028_G_A:1757,0,1113:2795028:19,11,23,22 +chrX 2795032 . C T 3510 . AC=2;AF=0.667;AN=3;AS_AltDP=85;AS_QD=30.52;BaseQRankSum=-1.224;DP=116;ExcessHet=0.0000;FS=6.657;MQ=60.00;MQRankSum=0;QD=30.52;ReadPosRankSum=-1.207;SOR=0.722;VarDP=116 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,39:39:99:.:.:1755,0:.:0,0,13,26 0|1:31,46:77:99:0|1:2795028_G_A:1785,0,1153:2795028:18,13,25,21 +chrX 2795048 . A G 3332 . AC=2;AF=0.667;AN=3;AS_AltDP=82;AS_QD=28.98;BaseQRankSum=-2.244;DP=116;ExcessHet=0.0000;FS=8.077;MQ=60.00;MQRankSum=0;QD=28.98;ReadPosRankSum=0.479;SOR=0.552;VarDP=116 GT:AD:DP:GQ:PL:SB 1:0,38:38:99:1649,0:0,0,13,25 0/1:34,44:78:99:1713,0,917:21,13,25,19 +chrX 2795170 . G T 1513 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=15.91;BaseQRankSum=2.856;DP=100;ExcessHet=0.0000;FS=0.761;MQ=60.00;MQRankSum=0;QD=15.91;ReadPosRankSum=-0.914;SOR=0.573;VarDP=97 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:759,0:0,0,11,12 0/1:45,29:74:99:784,0,1092:21,24,15,14 +chrX 2795240 . G GTATT 2390.97 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=25.31;BaseQRankSum=0.491;DP=101;ExcessHet=0.0000;FS=8.600;MQ=59.82;MQRankSum=-1.517;QD=25.31;ReadPosRankSum=0.737;SOR=0.246;VarDP=96 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:1292,0:0,0,17,14 0/1:35,30:65:99:1138,0,1379:11,24,12,18 +chrX 2795527 . G A 1310 . AC=1;AF=0.333;AN=3;AS_AltDP=40;AS_QD=33.50;DP=101;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.50;SOR=0.793;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,40:40:99:.:1340,0:0,0,21,19 0/0:.:61:91:61:0,91,1474 +chrX 2795657 . G T 2190 . AC=2;AF=0.667;AN=3;AS_AltDP=70;AS_QD=23.13;BaseQRankSum=-0.927;DP=100;ExcessHet=0.0000;FS=0.871;MQ=59.60;MQRankSum=-0.927;QD=23.13;ReadPosRankSum=1.325;SOR=0.532;VarDP=96 GT:AD:DP:GQ:PL:SB 1:0,42:42:99:1420,0:0,0,18,24 0/1:26,28:54:99:800,0,736:11,15,15,13 +chrX 2795722 . A G 2015 . AC=2;AF=0.667;AN=3;AS_AltDP=71;AS_QD=21.08;BaseQRankSum=-1.685;DP=99;ExcessHet=0.0000;FS=0.000;MQ=59.89;MQRankSum=0;QD=21.08;ReadPosRankSum=0.113;SOR=0.634;VarDP=97 GT:AD:DP:GQ:PL:SB 1:0,43:43:99:1374,0:0,0,20,23 0/1:26,28:54:99:671,0,692:12,14,14,14 +chrX 2795766 . T C 2029 . AC=2;AF=0.667;AN=3;AS_AltDP=69;AS_QD=21.23;BaseQRankSum=-0.753;DP=97;ExcessHet=0.0000;FS=1.832;MQ=59.89;MQRankSum=0;QD=21.23;ReadPosRankSum=0.249;SOR=0.482;VarDP=97 GT:AD:DP:GQ:PL:SB 1:0,39:39:99:1285,0:0,0,21,18 0/1:28,30:58:99:774,0,770:16,12,14,16 +chrX 2796236 . C T 2232 . AC=2;AF=0.667;AN=3;AS_AltDP=74;AS_QD=22.18;BaseQRankSum=1.477;DP=106;ExcessHet=0.0000;FS=5.847;MQ=60.00;MQRankSum=0;QD=22.18;ReadPosRankSum=-0.167;SOR=1.371;VarDP=102 GT:AD:DP:GQ:PL:SB 1:0,41:41:99:1365,0:0,0,16,25 0/1:28,33:61:99:897,0,700:14,14,11,22 +chrX 2796468 . A ATGTGTG,ATGTGTGTG 1637.97 . AC=2,0;AF=0.667,0.00;AN=3;AS_AltDP=35,0;AS_QD=24.66,9.76;BaseQRankSum=0.524;DP=93;ExcessHet=0.0000;FS=4.801;MQ=60.00;MQRankSum=0;QD=24.66;ReadPosRankSum=0.608;SOR=1.051;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,16,0:16:99:828,0,642:0,0,5,11 0/1:33,19,0:52:99:849,0,1339,713,1367,2038:18,15,9,10 +chrX 2796490 . A G 1301 . AC=2;AF=0.667;AN=3;AS_AltDP=41;AS_QD=16.85;BaseQRankSum=0.429;DP=88;ExcessHet=0.0000;FS=6.137;MQ=60.00;MQRankSum=0;QD=16.85;ReadPosRankSum=0.254;SOR=1.037;VarDP=79 GT:AD:DP:GQ:PL:SB 1:0,20:20:99:717,0:0,0,5,11 0/1:38,21:59:99:614,0,1458:21,17,9,10 +chrX 2797384 . A G 1703 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=23.11;BaseQRankSum=-0.767;DP=75;ExcessHet=0.0000;FS=2.301;MQ=60.00;MQRankSum=0;QD=23.11;ReadPosRankSum=-0.277;SOR=0.425;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:873,0:0,0,13,15 0/1:17,30:47:99:860,0,438:7,10,16,14 +chrX 2798992 . A G 1568 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=17.37;BaseQRankSum=0.078;DP=97;ExcessHet=0.0000;FS=1.797;MQ=60.00;MQRankSum=0;QD=17.37;ReadPosRankSum=-0.635;SOR=0.972;VarDP=92 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:937,0:0,0,12,18 0/1:36,26:62:99:661,0,1005:15,21,8,18 +chrX 2799026 . T C 1604 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=17.96;BaseQRankSum=-0.8;DP=92;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=17.96;ReadPosRankSum=0.697;SOR=0.624;VarDP=91 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:913,0:0,0,12,15 0/1:36,28:64:99:721,0,1038:15,21,12,16 +chrX 2799193 . C T 2201 . AC=2;AF=0.667;AN=3;AS_AltDP=75;AS_QD=21.87;BaseQRankSum=-0.821;DP=108;ExcessHet=0.0000;FS=9.464;MQ=60.00;MQRankSum=0;QD=21.87;ReadPosRankSum=2.124;SOR=0.209;VarDP=102 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:987,0:0,0,14,18 0/1:27,43:70:99:1244,0,708:20,7,28,15 +chrX 2799497 . A C 1649 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=17.49;BaseQRankSum=-1.709;DP=100;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=17.49;ReadPosRankSum=-0.523;SOR=0.675;VarDP=96 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:967,0:0,0,16,13 0/1:37,30:67:99:712,0,1026:18,19,13,17 +chrX 2800094 . T C 2516 . AC=3;AF=1.00;AN=3;AS_AltDP=75;AS_QD=33.95;DP=75;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.95;SOR=0.719;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,35:35:99:1192,0:0,0,16,19 1/1:0,40:40:99:1354,120,0:0,0,21,19 +chrX 2800975 . C CA 96.97 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=6.48;BaseQRankSum=0.319;DP=70;ExcessHet=0.0000;FS=7.991;MQ=59.59;MQRankSum=0;QD=6.48;ReadPosRankSum=-1.967;SOR=2.649;VarDP=21 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,405 0/1:9,12:21:99:.:136,0,107:5,4,2,10 +chrX 2801070 . G T 634 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=14.76;BaseQRankSum=0.584;DP=77;ExcessHet=0.0000;FS=1.150;MQ=60.00;MQRankSum=0;QD=14.76;ReadPosRankSum=1.423;SOR=0.922;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,405 0/1:21,24:45:99:.:664,0,564:12,9,15,9 +chrX 2801201 . CTG C 2314.97 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=27.37;BaseQRankSum=-0.961;DP=91;ExcessHet=0.0000;FS=4.401;MQ=60.00;MQRankSum=0;QD=27.37;ReadPosRankSum=-0.733;SOR=1.100;VarDP=86 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:1160,0:0,0,16,10 0/1:29,31:60:99:1194,0,1093:14,15,18,13 +chrX 2801257 . A G 1386 . AC=2;AF=0.667;AN=3;AS_AltDP=50;AS_QD=18.39;BaseQRankSum=2.1;DP=79;ExcessHet=0.0000;FS=3.244;MQ=60.00;MQRankSum=0;QD=18.39;ReadPosRankSum=1.574;SOR=0.510;VarDP=77 GT:AD:DP:GQ:PL:SB 1:1,24:25:99:769,0:1,0,14,10 0/1:26,26:52:99:647,0,687:10,16,12,14 +chrX 2801739 . C G 1655 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=20.30;BaseQRankSum=0.287;DP=90;ExcessHet=0.0000;FS=3.192;MQ=56.77;MQRankSum=-0.475;QD=20.30;ReadPosRankSum=1.085;SOR=0.860;VarDP=83 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:889,0:0,0,12,15 0/1:26,30:56:99:796,0,621:12,14,20,10 +chrX 2801799 . C T 1832 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=21.40;BaseQRankSum=-1.03;DP=91;ExcessHet=0.0000;FS=0.000;MQ=55.83;MQRankSum=0.774;QD=21.40;ReadPosRankSum=-0.278;SOR=0.746;VarDP=87 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:901,0:0,0,12,15 0/1:25,35:60:99:961,0,662:13,12,21,14 +chrX 2801918 . A G 413 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=8.86;BaseQRankSum=-1.584;DP=79;ExcessHet=0.0000;FS=6.147;MQ=59.35;MQRankSum=-0.986;QD=8.86;ReadPosRankSum=1.179;SOR=1.721;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:27:99:27:0,685 0/1:30,20:50:99:.:443,0,842:15,15,6,14 +chrX 2801929 . G T 1465 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=21.06;BaseQRankSum=0.189;DP=73;ExcessHet=0.0000;FS=11.561;MQ=58.79;MQRankSum=1.064;QD=21.06;ReadPosRankSum=-1.081;SOR=0.518;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,20:20:99:665,0:0,0,12,8 0/1:20,31:51:99:830,0,503:6,14,16,15 +chrX 2802661 . A G 1339 . AC=2;AF=0.667;AN=3;AS_AltDP=48;AS_QD=18.25;BaseQRankSum=-2.225;DP=78;ExcessHet=0.0000;FS=4.806;MQ=59.53;MQRankSum=-1.743;QD=18.25;ReadPosRankSum=-0.666;SOR=1.323;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,21:21:99:710,0:0,0,8,13 0/1:27,27:54:99:659,0,747:13,14,9,18 +chrX 2803605 . G T 1244 . AC=2;AF=0.667;AN=3;AS_AltDP=45;AS_QD=17.69;BaseQRankSum=1.705;DP=72;ExcessHet=0.0000;FS=0.000;MQ=49.55;MQRankSum=-0.302;QD=17.69;ReadPosRankSum=1.012;SOR=0.699;VarDP=72 GT:AD:DP:GQ:PL:SB 1:1,23:24:99:685,0:1,0,12,11 0/1:26,22:48:99:589,0,644:11,15,8,14 +chrX 2803747 . A G 1255 . AC=2;AF=0.667;AN=3;AS_AltDP=45;AS_QD=16.91;BaseQRankSum=-0.567;DP=78;ExcessHet=0.0000;FS=0.872;MQ=60.00;MQRankSum=0;QD=16.91;ReadPosRankSum=-0.226;SOR=0.818;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:734,0:0,0,12,11 0/1:31,22:53:99:551,0,879:17,14,14,8 +chrX 2803937 . G C 667 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=12.91;BaseQRankSum=0.47;DP=84;ExcessHet=0.0000;FS=3.828;MQ=59.24;MQRankSum=-0.61;QD=12.91;ReadPosRankSum=-0.675;SOR=0.700;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:27:99:27:0,655 0/1:27,27:54:99:.:697,0,657:11,16,15,12 +chrX 2804015 . A G 1670 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=18.48;BaseQRankSum=-0.378;DP=94;ExcessHet=0.0000;FS=10.493;MQ=59.41;MQRankSum=-0.183;QD=18.48;ReadPosRankSum=-0.931;SOR=0.684;VarDP=92 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:998,0:0,0,15,15 0/1:35,27:62:99:702,0,965:22,13,10,17 +chrX 2805625 . C T 2262 . AC=3;AF=1.00;AN=3;AS_AltDP=72;AS_QD=31.83;DP=74;ExcessHet=0.0000;FS=0.000;MQ=57.67;QD=31.83;SOR=1.675;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:968,0:0,0,21,9 1/1:0,42:42:99:1324,125,0:0,0,28,14 +chrX 2806719 . T C 3365 . AC=3;AF=1.00;AN=3;AS_AltDP=102;AS_QD=33.28;DP=106;ExcessHet=0.0000;FS=0.000;MQ=59.65;QD=33.28;SOR=0.952;VarDP=102 GT:AD:DP:GQ:PL:SB 1:0,39:39:99:1275,0:0,0,19,20 1/1:0,63:63:99:2120,189,0:0,0,26,37 +chrX 2807133 . C CTG 3741.97 . AC=3;AF=1.00;AN=3;AS_AltDP=89;AS_QD=26.49;DP=93;ExcessHet=0.0000;FS=0.000;MQ=58.10;QD=42.48;SOR=0.859;VarDP=89 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:1401,0:0,0,19,14 1/1:0,56:56:99:2380,168,0:0,0,29,27 +chrX 2807258 . A C 3437 . AC=3;AF=1.00;AN=3;AS_AltDP=106;AS_QD=32.71;DP=111;ExcessHet=0.0000;FS=0.000;MQ=56.34;QD=32.71;SOR=0.811;VarDP=106 GT:AD:DP:GQ:PL:SB 1:0,37:37:99:1144,0:0,0,20,17 1/1:0,69:69:99:2323,208,0:0,0,36,33 +chrX 2807477 . T C 5145 . AC=3;AF=1.00;AN=3;AS_AltDP=121;AS_QD=28.38;DP=122;ExcessHet=0.0000;FS=0.000;MQ=56.55;QD=42.77;SOR=0.814;VarDP=121 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,42:42:99:.:.:1791,0:.:0,0,21,21 1|1:0,79:79:99:0|1:2807477_T_C:3384,237,0:2807477:0,0,36,43 +chrX 2807502 . A T 5509 . AC=3;AF=1.00;AN=3;AS_AltDP=124;AS_QD=26.89;DP=124;ExcessHet=0.0000;FS=0.000;MQ=56.61;QD=44.67;SOR=0.902;VarDP=124 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,42:42:99:.:.:1878,0:.:0,0,22,20 1|1:0,82:82:99:0|1:2807477_T_C:3661,247,0:2807477:0,0,34,48 +chrX 2807504 . ACATGTGCACACATCGGTGTGTG A 5474.97 . AC=3;AF=1.00;AN=3;AS_AltDP=123;AS_QD=32.35;DP=124;ExcessHet=0.0000;FS=0.000;MQ=56.61;QD=44.83;SOR=0.924;VarDP=123 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,42:42:99:.:.:1878,0:.:0,0,22,20 1|1:0,81:81:99:0|1:2807477_T_C:3636,244,0:2807477:0,0,33,48 +chrX 2807619 . T G 3550 . AC=3;AF=1.00;AN=3;AS_AltDP=108;AS_QD=33.15;DP=109;ExcessHet=0.0000;FS=0.000;MQ=57.04;QD=33.15;SOR=0.769;VarDP=108 GT:AD:DP:GQ:PL:SB 1:0,36:36:99:1209,0:0,0,20,16 1/1:0,72:72:99:2371,216,0:0,0,32,40 +chrX 2807750 . T G 3011 . AC=3;AF=1.00;AN=3;AS_AltDP=96;AS_QD=31.68;DP=99;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.68;SOR=0.778;VarDP=96 GT:AD:DP:GQ:PL:SB 1:0,45:45:99:1439,0:0,0,25,20 1/1:0,51:51:99:1602,152,0:0,0,21,30 +chrX 2807842 . T C 2535 . AC=3;AF=1.00;AN=3;AS_AltDP=82;AS_QD=31.28;DP=84;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.28;SOR=1.445;VarDP=82 GT:AD:DP:GQ:PL:SB 1:0,37:37:99:1121,0:0,0,14,23 1/1:0,45:45:99:1444,135,0:0,0,15,30 +chrX 2808355 . A G 2566 . AC=3;AF=1.00;AN=3;AS_AltDP=77;AS_QD=33.71;DP=80;ExcessHet=0.0000;FS=0.000;MQ=59.96;QD=33.71;SOR=0.719;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:1023,0:0,0,15,15 1/1:0,47:47:99:1573,141,0:0,0,23,24 +chrX 2808606 . T G 2675 . AC=3;AF=1.00;AN=3;AS_AltDP=81;AS_QD=33.40;DP=82;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.40;SOR=0.934;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:1062,0:0,0,13,19 1/1:0,49:49:99:1643,146,0:0,0,23,26 +chrX 2809893 . T G 2486 . AC=3;AF=1.00;AN=3;AS_AltDP=81;AS_QD=31.06;DP=86;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.06;SOR=1.058;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:915,0:0,0,8,20 1/1:0,53:53:99:1601,157,0:0,0,26,27 +chrX 2810180 . A C 2605 . AC=3;AF=1.00;AN=3;AS_AltDP=81;AS_QD=32.53;DP=85;ExcessHet=0.0000;FS=0.000;MQ=59.88;QD=32.53;SOR=0.821;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,21:21:99:665,0:0,0,12,9 1/1:0,60:60:99:1970,180,0:0,0,31,29 +chrX 2810928 . GAAAT G 2501.97 . AC=3;AF=1.00;AN=3;AS_AltDP=58;AS_QD=34.86;DP=79;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.81;SOR=0.914;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:1175,0:0,0,12,15 1/1:0,31:31:94:1366,94,0:0,0,20,11 +chrX 2811240 . A G 2022 . AC=3;AF=1.00;AN=3;AS_AltDP=66;AS_QD=31.09;DP=67;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.09;SOR=0.818;VarDP=66 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:972,0:0,0,14,16 1/1:0,36:36:99:1080,106,0:0,0,17,19 +chrX 2811499 . T TA 2082.97 . AC=3;AF=1.00;AN=3;AS_AltDP=80;AS_QD=26.20;BaseQRankSum=-0.481;DP=90;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=26.20;ReadPosRankSum=0.068;SOR=0.265;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:799,0:0,0,16,14 1/1:1,50:51:99:1323,125,0:1,0,26,24 +chrX 2812078 . A AG 4043.97 . AC=3;AF=1.00;AN=3;AS_AltDP=91;AS_QD=32.39;DP=93;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.87;SOR=1.014;VarDP=91 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,41:41:99:.:.:1833,0:.:0,0,21,20 1|1:0,50:50:99:0|1:2812078_A_AG:2250,150,0:2812078:0,0,18,32 +chrX 2812079 . C CCAAATATAGTT 4043.97 . AC=3;AF=1.00;AN=3;AS_AltDP=91;AS_QD=28.46;DP=92;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.87;SOR=1.014;VarDP=91 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,41:41:99:.:.:1833,0:.:0,0,21,20 1|1:0,50:50:99:0|1:2812078_A_AG:2250,151,0:2812078:0,0,18,32 +chrX 2812248 . G A 2408 . AC=3;AF=1.00;AN=3;AS_AltDP=73;AS_QD=33.40;DP=77;ExcessHet=0.0000;FS=0.000;MQ=59.66;QD=33.40;SOR=0.836;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:899,0:0,0,10,17 1/1:0,46:46:99:1539,138,0:0,0,29,17 +chrX 2814055 . C T 3191 . AC=3;AF=1.00;AN=3;AS_AltDP=97;AS_QD=33.21;DP=99;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.21;SOR=0.714;VarDP=97 GT:AD:DP:GQ:PL:SB 1:0,44:44:99:1449,0:0,0,19,25 1/1:0,53:53:99:1772,159,0:0,0,29,24 +chrX 2814125 . A T 2668 . AC=3;AF=1.00;AN=3;AS_AltDP=83;AS_QD=32.51;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.51;SOR=0.818;VarDP=83 GT:AD:DP:GQ:PL:SB 1:0,34:34:99:1051,0:0,0,19,15 1/1:0,49:49:99:1647,147,0:0,0,25,24 +chrX 2814315 . C CT 2136.97 . AC=3;AF=1.00;AN=3;AS_AltDP=78;AS_QD=27.90;DP=89;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=27.90;SOR=0.914;VarDP=78 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:755,0:0,0,15,12 1/1:0,51:51:99:1421,153,0:0,0,28,23 +chrX 2815068 . T G 2080 . AC=3;AF=1.00;AN=3;AS_AltDP=63;AS_QD=33.49;DP=64;ExcessHet=0.0000;FS=0.000;MQ=59.90;QD=33.49;SOR=0.859;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:859,0:0,0,16,9 1/1:0,38:38:99:1251,114,0:0,0,18,20 +chrX 2815169 . G A 2679 . AC=3;AF=1.00;AN=3;AS_AltDP=82;AS_QD=33.04;DP=85;ExcessHet=0.0000;FS=0.000;MQ=59.06;QD=33.04;SOR=0.742;VarDP=82 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:932,0:0,0,15,15 1/1:0,52:52:99:1777,156,0:0,0,27,25 +chrX 2815235 . G A 2887 . AC=3;AF=1.00;AN=3;AS_AltDP=89;AS_QD=32.78;DP=93;ExcessHet=0.0000;FS=0.000;MQ=59.32;QD=32.78;SOR=1.481;VarDP=89 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:819,0:0,0,17,8 1/1:0,64:64:99:2098,192,0:0,0,41,23 +chrX 2815600 . A G 2585 . AC=3;AF=1.00;AN=3;AS_AltDP=82;AS_QD=31.51;BaseQRankSum=-0.443;DP=85;ExcessHet=0.0000;FS=0.000;MQ=52.70;MQRankSum=-0.973;QD=31.51;ReadPosRankSum=0.639;SOR=0.432;VarDP=83 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:844,0:0,0,11,15 1/1:1,56:57:99:1771,136,0:0,1,22,34 +chrX 2815627 . G A 2783 . AC=3;AF=1.00;AN=3;AS_AltDP=86;AS_QD=31.61;BaseQRankSum=2.502;DP=92;ExcessHet=0.0000;FS=2.160;MQ=51.31;MQRankSum=-1.337;QD=31.61;ReadPosRankSum=2.192;SOR=0.497;VarDP=89 GT:AD:DP:GQ:PL:SB 1:1,26:27:99:843,0:1,0,13,13 1/1:2,60:62:99:1970,142,0:1,1,28,32 +chrX 2815802 . C CAT 3053.97 . AC=3;AF=1.00;AN=3;AS_AltDP=79;AS_QD=33.42;BaseQRankSum=-0.711;DP=86;ExcessHet=0.0000;FS=3.048;MQ=59.64;MQRankSum=-0.226;QD=38.19;ReadPosRankSum=1.213;SOR=0.121;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,34:34:99:1487,0:0,0,18,16 1/1:2,45:47:90:1606,90,0:0,2,20,25 +chrX 2815821 . A ACACACACACACC,ACACACACACACACC,ACACACACACACACACC,ACACACACACACACACACC 3609.97 . AC=0,2,1,0;AF=0.00,0.667,0.333,0.00;AN=3;AS_AltDP=2,38,23,1;AS_QD=35.83,33.11,25.63,27.28;DP=92;ExcessHet=0.0000;FS=0.000;MQ=59.64;QD=57.02;SOR=0.822;VarDP=64 GT:AD:DP:GQ:PL:SB 2:0,2,25,0,0:27:99:1448,756,0,1121,1121:0,0,13,14 2/3:0,0,13,23,1:37:99:2201,1807,1762,762,735,605,411,369,0,251,1255,1212,612,335,1136:0,0,17,20 +chrX 2816629 . A G 659 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=10.44;BaseQRankSum=-0.049;DP=98;ExcessHet=0.0000;FS=3.391;MQ=60.00;MQRankSum=0;QD=10.44;ReadPosRankSum=-0.672;SOR=1.070;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,651 0/1:39,27:66:99:.:689,0,1087:19,20,16,11 +chrX 2816680 . ATT A 2584.97 . AC=3;AF=1.00;AN=3;AS_AltDP=74;AS_QD=34.99;DP=98;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=34.99;SOR=0.245;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,21:21:99:756,0:0,0,11,10 1/1:1,53:54:99:1868,128,0:1,0,27,26 +chrX 2816797 . G A 2624 . AC=3;AF=1.00;AN=3;AS_AltDP=79;AS_QD=33.59;DP=84;ExcessHet=0.0000;FS=0.000;MQ=59.42;QD=33.59;SOR=0.824;VarDP=79 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:951,0:0,0,12,16 1/1:0,51:51:99:1703,153,0:0,0,25,26 +chrX 2816889 . G C 3165 . AC=3;AF=1.00;AN=3;AS_AltDP=76;AS_QD=34.18;DP=80;ExcessHet=0.0000;FS=0.000;MQ=59.34;QD=42.04;SOR=0.920;VarDP=76 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,24:24:99:.:.:1026,0:.:0,0,12,12 1|1:0,52:52:99:0|1:2816889_G_C:2169,156,0:2816889:0,0,22,30 +chrX 2816907 . AC A 3055.97 . AC=3;AF=1.00;AN=3;AS_AltDP=73;AS_QD=29.79;DP=76;ExcessHet=0.0000;FS=0.000;MQ=59.75;QD=42.40;SOR=1.257;VarDP=73 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,25:25:99:.:.:1055,0:.:0,0,11,14 1|1:0,48:48:99:0|1:2816889_G_C:2040,144,0:2816889:0,0,17,31 +chrX 2817099 . G GAGAGAC 2400.97 . AC=3;AF=1.00;AN=3;AS_AltDP=55;AS_QD=29.26;DP=62;ExcessHet=0.0000;FS=0.000;MQ=58.14;QD=44.36;SOR=1.791;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,21:21:99:.:.:944,0:.:0,0,15,6 1|1:0,34:34:99:0|1:2817099_G_GAGAGAC:1496,102,0:2817099:0,0,22,10 +chrX 2817108 . A AG 2269.97 . AC=3;AF=1.00;AN=3;AS_AltDP=52;AS_QD=31.92;DP=54;ExcessHet=0.0000;FS=0.000;MQ=57.53;QD=44.40;SOR=1.656;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,20:20:99:.:.:900,0:.:0,0,14,6 1|1:0,32:32:96:0|1:2817099_G_GAGAGAC:1409,96,0:2817099:0,0,20,10 +chrX 2817111 . A AGGGAGAGAGGG 2337.97 . AC=3;AF=1.00;AN=3;AS_AltDP=54;AS_QD=28.66;DP=56;ExcessHet=0.0000;FS=0.000;MQ=57.62;QD=44.02;SOR=1.747;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,20:20:99:.:.:889,0:.:0,0,15,5 1|1:0,34:34:99:0|1:2817099_G_GAGAGAC:1488,102,0:2817099:0,0,21,11 +chrX 2817122 . A G 1965 . AC=3;AF=1.00;AN=3;AS_AltDP=47;AS_QD=34.78;DP=49;ExcessHet=0.0000;FS=0.000;MQ=57.23;QD=42.45;SOR=2.252;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,16:16:99:.:.:699,0:.:0,0,13,3 1|1:0,31:31:93:0|1:2817099_G_GAGAGAC:1296,93,0:2817099:0,0,21,8 +chrX 2817150 . A AGGAG 1769.97 . AC=3;AF=1.00;AN=3;AS_AltDP=41;AS_QD=28.98;DP=55;ExcessHet=0.0000;FS=0.000;MQ=57.68;QD=44.12;SOR=1.501;VarDP=41 GT:AD:DP:GQ:PL:SB 1:0,15:15:99:675,0:0,0,12,3 1/1:0,26:26:78:1134,78,0:0,0,15,11 +chrX 2817498 . G A 2982 . AC=3;AF=1.00;AN=3;AS_AltDP=94;AS_QD=31.71;BaseQRankSum=-0.452;DP=98;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=31.71;ReadPosRankSum=-0.912;SOR=0.259;VarDP=95 GT:AD:DP:GQ:PL:SB 1:1,37:38:99:1171,0:0,1,21,16 1/1:0,57:57:99:1841,171,0:0,0,24,33 +chrX 2817580 . T C 2917 . AC=3;AF=1.00;AN=3;AS_AltDP=94;AS_QD=31.02;BaseQRankSum=-0.475;DP=97;ExcessHet=0.0000;FS=3.056;MQ=59.81;MQRankSum=0;QD=31.02;ReadPosRankSum=1.288;SOR=0.290;VarDP=95 GT:AD:DP:GQ:PL:SB 1:1,34:35:99:1052,0:0,1,18,16 1/1:0,60:60:99:1895,179,0:0,0,30,30 +chrX 2817700 . T A 2655 . AC=3;AF=1.00;AN=3;AS_AltDP=81;AS_QD=33.15;DP=84;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.15;SOR=0.876;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,34:34:99:1112,0:0,0,18,16 1/1:0,47:47:99:1573,141,0:0,0,26,21 +chrX 2817781 . C CATT 3480.97 . AC=3;AF=1.00;AN=3;AS_AltDP=79;AS_QD=30.42;DP=81;ExcessHet=0.0000;FS=0.000;MQ=59.79;QD=44.56;SOR=0.718;VarDP=79 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:1473,0:0,0,17,16 1/1:0,46:46:99:2047,138,0:0,0,23,23 +chrX 2817885 . G A 3419 . AC=3;AF=1.00;AN=3;AS_AltDP=104;AS_QD=33.16;DP=107;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.16;SOR=1.201;VarDP=104 GT:AD:DP:GQ:PL:SB 1:0,42:42:99:1415,0:0,0,26,16 1/1:0,62:62:99:2034,186,0:0,0,37,25 +chrX 2818079 . TATTA T 4253.97 . AC=3;AF=1.00;AN=3;AS_AltDP=96;AS_QD=35.72;DP=102;ExcessHet=0.0000;FS=0.000;MQ=59.90;QD=44.72;SOR=0.969;VarDP=96 GT:AD:DP:GQ:PL:SB 1:0,34:34:99:1524,0:0,0,15,19 1/1:0,62:62:99:2769,187,0:0,0,27,35 +chrX 2818155 . C A 3209 . AC=3;AF=1.00;AN=3;AS_AltDP=97;AS_QD=33.39;DP=99;ExcessHet=0.0000;FS=0.000;MQ=59.90;QD=33.39;SOR=0.892;VarDP=97 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:912,0:0,0,17,11 1/1:0,69:69:99:2327,208,0:0,0,36,33 +chrX 2819056 . G A 3330 . AC=3;AF=1.00;AN=3;AS_AltDP=101;AS_QD=33.27;DP=106;ExcessHet=0.0000;FS=0.000;MQ=59.67;QD=33.27;SOR=0.979;VarDP=101 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:1102,0:0,0,14,18 1/1:0,69:69:99:2258,207,0:0,0,30,39 +chrX 2819153 . C T 2631 . AC=3;AF=1.00;AN=3;AS_AltDP=79;AS_QD=33.68;DP=80;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.68;SOR=0.718;VarDP=79 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:834,0:0,0,11,13 1/1:0,55:55:99:1827,165,0:0,0,28,27 +chrX 2819426 . C CA,CAA 2122.97 . AC=3,0;AF=1.00,0.00;AN=3;AS_AltDP=76,1;AS_QD=28.08,3.00;BaseQRankSum=-0.58;DP=87;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=27.72;ReadPosRankSum=-1.341;SOR=0.470;VarDP=78 GT:AD:DP:GQ:PL:SB 1:1,20,1:22:99:571,0,565:0,1,9,12 1/1:0,56,0:56:99:1591,168,0,1591,168,1591:0,0,21,35 +chrX 2819495 . A G 2369 . AC=3;AF=1.00;AN=3;AS_AltDP=72;AS_QD=33.32;DP=75;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.32;SOR=0.749;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:836,0:0,0,17,8 1/1:0,47:47:99:1563,141,0:0,0,20,27 +chrX 2819792 . TC T 3198.97 . AC=3;AF=1.00;AN=3;AS_AltDP=81;AS_QD=30.69;DP=87;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=39.98;SOR=0.821;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:1287,0:0,0,13,19 1/1:0,49:49:99:1951,147,0:0,0,25,24 +chrX 2819810 . G T 2321 . AC=3;AF=1.00;AN=3;AS_AltDP=71;AS_QD=33.11;DP=75;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.11;SOR=0.721;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:851,0:0,0,13,13 1/1:0,45:45:99:1500,135,0:0,0,22,23 +chrX 2822282 . G T 2998 . AC=3;AF=1.00;AN=3;AS_AltDP=92;AS_QD=32.56;BaseQRankSum=2.816;DP=97;ExcessHet=0.0000;FS=3.057;MQ=59.82;MQRankSum=0;QD=32.56;ReadPosRankSum=0.085;SOR=0.292;VarDP=93 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:1032,0:0,0,18,14 1/1:1,60:61:99:1996,173,0:1,0,27,33 +chrX 2822640 . G C 3607 . AC=3;AF=1.00;AN=3;AS_AltDP=112;AS_QD=32.47;DP=116;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.47;SOR=1.159;VarDP=112 GT:AD:DP:GQ:PL:SB 1:0,39:39:99:1280,0:0,0,20,19 1/1:0,73:73:99:2357,219,0:0,0,47,26 +chrX 2822850 . C T 2372 . AC=3;AF=1.00;AN=3;AS_AltDP=72;AS_QD=33.36;DP=75;ExcessHet=0.0000;FS=0.000;MQ=59.76;QD=33.36;SOR=0.934;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,21:21:99:700,0:0,0,12,9 1/1:0,51:51:99:1702,153,0:0,0,20,31 +chrX 2823003 . C A 1933 . AC=3;AF=1.00;AN=3;AS_AltDP=61;AS_QD=32.18;DP=63;ExcessHet=0.0000;FS=0.000;MQ=59.73;QD=32.18;SOR=0.865;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:789,0:0,0,8,15 1/1:0,38:38:99:1174,114,0:0,0,20,18 +chrX 2823037 . C A,T 600 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=1,23;AS_QD=0.00,14.32;BaseQRankSum=2.611;DP=86;ExcessHet=0.0000;FS=1.154;MQ=60.00;MQRankSum=0;QD=14.00;ReadPosRankSum=1.024;SOR=0.465;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:36:99:36:0,818,818 0/2:21,1,23:45:99:.:630,708,1754,0,570,518:12,9,12,12 +chrX 2824077 . G A 2841 . AC=3;AF=1.00;AN=3;AS_AltDP=89;AS_QD=32.26;DP=91;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.26;SOR=1.481;VarDP=89 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:1066,0:0,0,18,15 1/1:0,56:56:99:1805,168,0:0,0,40,16 +chrX 2825018 . TTCA T 2368.97 . AC=3;AF=1.00;AN=3;AS_AltDP=55;AS_QD=32.91;DP=64;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.78;SOR=1.262;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,14:14:99:572,0:0,0,9,5 1/1:0,41:41:99:1836,124,0:0,0,25,16 +chrX 2825586 . C A 3536 . AC=3;AF=1.00;AN=3;AS_AltDP=107;AS_QD=33.33;DP=109;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.33;SOR=0.961;VarDP=107 GT:AD:DP:GQ:PL:SB 1:0,36:36:99:1180,0:0,0,13,23 1/1:0,71:71:99:2386,214,0:0,0,34,37 +chrX 2825620 . G A 3086 . AC=3;AF=1.00;AN=3;AS_AltDP=92;AS_QD=33.87;DP=93;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.87;SOR=1.038;VarDP=92 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:1022,0:0,0,13,17 1/1:0,62:62:99:2094,186,0:0,0,26,36 +chrX 2825913 . C T 2539 . AC=3;AF=1.00;AN=3;AS_AltDP=80;AS_QD=32.11;DP=82;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.11;SOR=0.968;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:967,0:0,0,15,16 1/1:0,49:49:99:1602,147,0:0,0,20,29 +chrX 2826361 . A G 2560 . AC=3;AF=1.00;AN=3;AS_AltDP=79;AS_QD=32.78;DP=81;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.78;SOR=1.003;VarDP=79 GT:AD:DP:GQ:PL:SB 1:0,39:39:99:1275,0:0,0,23,16 1/1:0,40:40:99:1315,120,0:0,0,22,18 +chrX 2826724 . C T 2848 . AC=3;AF=1.00;AN=3;AS_AltDP=89;AS_QD=32.34;DP=91;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.34;SOR=0.761;VarDP=89 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:834,0:0,0,14,12 1/1:0,63:63:99:2044,189,0:0,0,32,31 +chrX 2827053 . CACTCATACATGCATGCACTCACACCATCATCACTCATTCA C 1940.97 . AC=3;AF=1.00;AN=3;AS_AltDP=45;AS_QD=28.10;DP=66;ExcessHet=0.0000;FS=0.000;MQ=58.66;QD=44.00;SOR=1.154;VarDP=45 GT:AD:DP:GQ:PL:SB 1:0,21:21:99:916,0:0,0,13,8 1/1:0,24:24:78:1064,78,0:0,0,14,10 +chrX 2828517 . T C 3358 . AC=3;AF=1.00;AN=3;AS_AltDP=104;AS_QD=32.58;DP=107;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.58;SOR=0.772;VarDP=104 GT:AD:DP:GQ:PL:SB 1:0,44:44:99:1403,0:0,0,19,25 1/1:0,60:60:99:1985,180,0:0,0,31,29 +chrX 2828821 . G A 3187 . AC=3;AF=1.00;AN=3;AS_AltDP=105;AS_QD=30.64;DP=112;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.64;SOR=1.015;VarDP=105 GT:AD:DP:GQ:PL:SB 1:0,43:43:99:1293,0:0,0,18,25 1/1:0,62:62:99:1924,185,0:0,0,27,35 +chrX 2828879 . T TG 3431.97 . AC=3;AF=1.00;AN=3;AS_AltDP=99;AS_QD=36.91;DP=103;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=35.06;SOR=1.261;VarDP=99 GT:AD:DP:GQ:PL:SB 1:0,36:36:99:1282,0:0,0,13,23 1/1:0,63:63:99:2189,188,0:0,0,25,38 +chrX 2829473 . C T 772 . AC=2;AF=0.667;AN=3;AS_AltDP=29;AS_QD=17.82;BaseQRankSum=0.123;DP=53;ExcessHet=0.0000;FS=3.086;MQ=60.00;MQRankSum=0;QD=17.82;ReadPosRankSum=-1.371;SOR=0.307;VarDP=45 GT:AD:DP:GQ:PL:SB 1:0,17:17:99:499,0:0,0,12,5 0/1:16,12:28:99:303,0,417:13,3,8,4 +chrX 2830010 . T C 3024 . AC=3;AF=1.00;AN=3;AS_AltDP=96;AS_QD=31.81;DP=98;ExcessHet=0.0000;FS=0.000;MQ=59.72;QD=31.81;SOR=1.132;VarDP=96 GT:AD:DP:GQ:PL:SB 1:0,41:41:99:1320,0:0,0,18,23 1/1:0,55:55:99:1734,165,0:0,0,21,34 +chrX 2830212 . G C 3293 . AC=3;AF=1.00;AN=3;AS_AltDP=101;AS_QD=32.58;BaseQRankSum=2.987;DP=107;ExcessHet=0.0000;FS=3.751;MQ=59.59;MQRankSum=-0.116;QD=32.58;ReadPosRankSum=-0.489;SOR=0.787;VarDP=102 GT:AD:DP:GQ:PL:SB 1:1,38:39:99:1271,0:0,1,21,17 1/1:0,63:63:99:2052,189,0:0,0,38,25 +chrX 2830251 . C G 2922 . AC=3;AF=1.00;AN=3;AS_AltDP=92;AS_QD=32.09;DP=98;ExcessHet=0.0000;FS=0.000;MQ=59.28;QD=32.09;SOR=0.693;VarDP=92 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:1032,0:0,0,14,17 1/1:0,61:61:99:1920,182,0:0,0,32,29 +chrX 2830380 . G A 2556 . AC=3;AF=1.00;AN=3;AS_AltDP=78;AS_QD=32.73;BaseQRankSum=5.66;DP=84;ExcessHet=0.0000;FS=4.205;MQ=59.77;MQRankSum=0;QD=32.73;ReadPosRankSum=-0.783;SOR=1.108;VarDP=79 GT:AD:DP:GQ:PL:SB 1:1,30:31:99:1018,0:1,0,8,22 1/1:0,48:48:99:1568,143,0:0,0,21,27 +chrX 2831480 . T C 2835 . AC=3;AF=1.00;AN=3;AS_AltDP=93;AS_QD=30.81;DP=99;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.81;SOR=1.061;VarDP=93 GT:AD:DP:GQ:PL:SB 1:0,34:34:99:1020,0:0,0,17,17 1/1:0,59:59:99:1845,177,0:0,0,37,22 +chrX 2832081 . C T 2795 . AC=3;AF=1.00;AN=3;AS_AltDP=85;AS_QD=32.85;BaseQRankSum=-0.2;DP=87;ExcessHet=0.0000;FS=3.112;MQ=60.00;MQRankSum=0;QD=32.85;ReadPosRankSum=-1.502;SOR=0.335;VarDP=86 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:864,0:0,0,14,12 1/1:1,59:60:99:1961,145,0:0,1,30,29 +chrX 2832413 . C CT 3712.97 . AC=3;AF=1.00;AN=3;AS_AltDP=101;AS_QD=27.84;DP=106;ExcessHet=0.0000;FS=0.000;MQ=59.85;QD=37.15;SOR=0.795;VarDP=101 GT:AD:DP:GQ:PL:SB 1:0,38:38:99:1412,0:0,0,21,17 1/1:0,63:63:99:2340,190,0:0,0,32,31 +chrX 2832727 . G T 875 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=16.45;BaseQRankSum=0.604;DP=89;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=16.45;ReadPosRankSum=-1.306;SOR=0.698;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:34:99:34:0,645 0/1:22,33:55:99:.:905,0,505:12,10,18,15 +chrX 2833119 . T C 2982 . AC=3;AF=1.00;AN=3;AS_AltDP=91;AS_QD=33.10;DP=92;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.10;SOR=1.071;VarDP=91 GT:AD:DP:GQ:PL:SB 1:0,35:35:99:1177,0:0,0,23,12 1/1:0,56:56:99:1835,168,0:0,0,30,26 +chrX 2833659 . T C 2453 . AC=3;AF=1.00;AN=3;AS_AltDP=74;AS_QD=33.55;DP=77;ExcessHet=0.0000;FS=0.000;MQ=59.76;QD=33.55;SOR=0.864;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:780,0:0,0,9,14 1/1:0,51:51:99:1703,153,0:0,0,31,20 +chrX 2833863 . C G 1693 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=16.89;BaseQRankSum=-0.472;DP=104;ExcessHet=0.0000;FS=5.103;MQ=60.00;MQRankSum=0;QD=16.89;ReadPosRankSum=0.78;SOR=0.767;VarDP=102 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:803,0:0,0,12,13 0/1:39,38:77:99:920,0,995:22,17,16,22 +chrX 2834029 . C T 1069 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=16.40;BaseQRankSum=2.549;DP=102;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=16.40;ReadPosRankSum=0.81;SOR=0.641;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:33:99:33:0,461 0/1:29,38:67:99:.:1099,0,712:18,11,23,15 +chrX 2834292 . C T 1064 . AC=1;AF=0.333;AN=3;AS_AltDP=41;AS_QD=17.09;BaseQRankSum=1.296;DP=98;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=17.09;ReadPosRankSum=-0.147;SOR=0.619;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:33:99:33:0,461 0/1:23,41:64:99:.:1094,0,467:9,14,17,24 +chrX 2834575 . G GA 1005.97 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=20.90;BaseQRankSum=-0.076;DP=84;ExcessHet=0.0000;FS=4.116;MQ=59.67;MQRankSum=-0.708;QD=20.90;ReadPosRankSum=0.394;SOR=0.537;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:33:99:33:0,461 0/1:18,32:50:99:.:1045,0,522:11,7,15,17 +chrX 2834666 . A G 725 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=13.48;BaseQRankSum=0.657;DP=92;ExcessHet=0.0000;FS=1.029;MQ=59.72;MQRankSum=-0.964;QD=13.48;ReadPosRankSum=0.59;SOR=0.997;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:33:99:33:0,461 0/1:28,28:56:99:.:755,0,735:14,14,16,12 +chrX 2835141 . G C 653 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=12.42;BaseQRankSum=-1.529;DP=88;ExcessHet=0.0000;FS=1.029;MQ=60.00;MQRankSum=0;QD=12.42;ReadPosRankSum=-1.381;SOR=0.922;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:33:99:33:0,461 0/1:28,27:55:99:.:683,0,753:14,14,15,12 +chrX 2835486 . T C 940 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=13.11;BaseQRankSum=1.605;DP=113;ExcessHet=0.0000;FS=5.952;MQ=53.23;MQRankSum=-1.667;QD=13.11;ReadPosRankSum=0.871;SOR=1.154;VarDP=74 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:33:99:33:0,461 0/1:38,36:74:99:.:970,0,973:18,20,22,14 +chrX 2836673 . CAAA C 418.97 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=14.77;BaseQRankSum=-2.959;DP=80;ExcessHet=0.0000;FS=1.412;MQ=60.00;MQRankSum=0;QD=14.77;ReadPosRankSum=0.464;SOR=0.681;VarDP=31 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:33:99:33:0,461 0/1:18,13:31:99:.:458,0,564:10,8,6,7 +chrX 2836752 . T C 819 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=16.02;BaseQRankSum=-0.68;DP=87;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=16.02;ReadPosRankSum=-2.146;SOR=0.610;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:33:99:33:0,461 0/1:21,32:53:99:.:849,0,515:10,11,16,16 +chrX 2836852 . T A 2437 . AC=3;AF=1.00;AN=3;AS_AltDP=73;AS_QD=33.79;DP=76;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.79;SOR=0.836;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:908,0:0,0,13,14 1/1:0,46:46:99:1559,138,0:0,0,21,25 +chrX 2837838 . TACACACAC T 913.97 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=17.65;BaseQRankSum=1.419;DP=95;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=17.65;ReadPosRankSum=-0.223;SOR=0.723;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,546 0/1:29,25:54:99:.:953,0,1086:13,16,11,14 +chrX 2837884 . C T 1098 . AC=2;AF=0.667;AN=3;AS_AltDP=42;AS_QD=15.89;BaseQRankSum=-0.307;DP=75;ExcessHet=0.0000;FS=8.137;MQ=60.00;MQRankSum=0;QD=15.89;ReadPosRankSum=0.865;SOR=0.959;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,22:22:99:659,0:0,0,15,7 0/1:29,20:49:99:469,0,772:12,17,10,10 +chrX 2838029 . C CA,CAA 218.97 . AC=1,0;AF=0.333,0.00;AN=3;AS_AltDP=13,2;AS_QD=7.82,0.23;BaseQRankSum=0.213;DP=70;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=7.37;ReadPosRankSum=0.4;SOR=0.511;VarDP=35 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:99:28:0,301,301 0/1:20,13,2:35:99:.:258,0,406,253,454,908:7,13,6,9 +chrX 2838372 . T C 414 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=10.09;BaseQRankSum=-1.834;DP=73;ExcessHet=0.0000;FS=2.649;MQ=60.00;MQRankSum=0;QD=10.09;ReadPosRankSum=0.948;SOR=0.883;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:99:28:0,301 0/1:25,19:44:99:.:444,0,692:11,14,11,8 +chrX 2838452 . C CCCCTCCCTTCCTCCTT 2045.97 . AC=3;AF=1.00;AN=3;AS_AltDP=47;AS_QD=30.61;DP=54;ExcessHet=0.0000;FS=0.000;MQ=59.25;QD=44.36;SOR=1.981;VarDP=47 GT:AD:DP:GQ:PL:SB 1:0,18:18:99:809,0:0,0,5,13 1/1:0,29:29:87:1276,87,0:0,0,8,21 +chrX 2838775 . AT A 722.97 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=14.94;BaseQRankSum=-0.672;DP=83;ExcessHet=0.0000;FS=3.975;MQ=60.00;MQRankSum=0;QD=14.94;ReadPosRankSum=1.326;SOR=0.560;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:27:99:27:0,491 0/1:23,28:51:99:.:762,0,594:14,9,13,15 +chrX 2839192 . A G 705 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=14.41;BaseQRankSum=0.219;DP=84;ExcessHet=0.0000;FS=2.407;MQ=60.00;MQRankSum=0;QD=14.41;ReadPosRankSum=0.482;SOR=1.079;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:27:99:27:0,491 0/1:24,27:51:99:.:735,0,631:14,10,18,9 +chrX 2839358 . C T 770 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=13.56;BaseQRankSum=0.716;DP=87;ExcessHet=0.0000;FS=0.000;MQ=59.61;MQRankSum=0;QD=13.56;ReadPosRankSum=-1.047;SOR=0.765;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:27:99:27:0,491 0/1:30,29:59:99:.:800,0,814:14,16,13,16 +chrX 2839707 . G A 2726 . AC=3;AF=1.00;AN=3;AS_AltDP=74;AS_QD=32.35;DP=78;ExcessHet=0.0000;FS=0.000;MQ=59.61;QD=37.24;SOR=0.992;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,22:22:99:744,0:0,0,10,12 1/1:0,52:52:99:2012,156,0:0,0,22,30 +chrX 2839713 . T C 746 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=14.37;BaseQRankSum=0.331;DP=78;ExcessHet=0.0000;FS=1.055;MQ=59.60;MQRankSum=-1.617;QD=14.37;ReadPosRankSum=-0.66;SOR=0.976;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:23:99:23:0,700 0/1:25,29:54:99:.:776,0,636:12,13,12,17 +chrX 2839742 . G A 1433 . AC=2;AF=0.667;AN=3;AS_AltDP=50;AS_QD=18.06;BaseQRankSum=0.691;DP=81;ExcessHet=0.0000;FS=4.378;MQ=60.00;MQRankSum=0;QD=18.06;ReadPosRankSum=-2.028;SOR=0.352;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:758,0:0,0,11,12 0/1:31,27:58:99:705,0,834:12,19,14,13 +chrX 2841004 . TATAG T 2937.97 . AC=3;AF=1.00;AN=3;AS_AltDP=67;AS_QD=28.66;DP=79;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.43;SOR=0.784;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:1065,0:0,0,11,13 1/1:0,43:43:99:1912,130,0:0,0,21,22 +chrX 2841364 . TGATA T 1884.97 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=25.32;BaseQRankSum=1.921;DP=85;ExcessHet=0.0000;FS=1.921;MQ=60.00;MQRankSum=0;QD=25.32;ReadPosRankSum=-0.581;SOR=0.567;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,22:22:99:971,0:0,0,11,11 0/1:29,25:54:99:953,0,1142:16,13,12,13 +chrX 2841574 . C G 669 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=11.65;BaseQRankSum=1.797;DP=91;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=11.65;ReadPosRankSum=1.172;SOR=0.588;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,685 0/1:34,26:60:99:.:699,0,931:16,18,13,13 +chrX 2842019 . T C 532 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=12.22;BaseQRankSum=0.23;DP=77;ExcessHet=0.0000;FS=2.454;MQ=60.00;MQRankSum=0;QD=12.22;ReadPosRankSum=0.044;SOR=0.937;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,685 0/1:25,21:46:99:.:562,0,675:12,13,12,9 +chrX 2842185 . C CTTTCTTT 1665.97 . AC=2;AF=0.667;AN=3;AS_AltDP=43;AS_QD=26.23;BaseQRankSum=2.035;DP=86;ExcessHet=0.0000;FS=3.645;MQ=60.00;MQRankSum=0;QD=26.23;ReadPosRankSum=-2.558;SOR=0.951;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:1008,0:0,0,15,8 0/1:22,20:42:99:697,0,798:10,12,10,10 +chrX 2842253 . A G 720 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=13.39;BaseQRankSum=0.927;DP=87;ExcessHet=0.0000;FS=2.310;MQ=60.00;MQRankSum=0;QD=13.39;ReadPosRankSum=-0.713;SOR=1.189;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,392 0/1:28,28:56:99:.:750,0,735:15,13,18,10 +chrX 2842449 . G A 1054 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=19.71;BaseQRankSum=0.637;DP=85;ExcessHet=0.0000;FS=7.450;MQ=59.91;MQRankSum=-0.946;QD=19.71;ReadPosRankSum=-1.143;SOR=0.734;VarDP=55 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:30:99:30:.:.:0,392 0|1:27,28:55:99:.:0|1:2842449_G_A:1084,0,982:2842449:17,10,12,16 +chrX 2842458 . A G 1085 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=19.91;BaseQRankSum=-0.329;DP=88;ExcessHet=0.0000;FS=11.697;MQ=59.92;MQRankSum=-0.929;QD=19.91;ReadPosRankSum=-0.73;SOR=0.786;VarDP=56 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:30:99:30:.:.:0,392 0|1:27,29:56:99:.:0|1:2842449_G_A:1115,0,1005:2842449:18,9,12,17 +chrX 2842743 . GTGTTT G 2602.97 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=27.81;BaseQRankSum=0.845;DP=109;ExcessHet=0.0000;FS=1.837;MQ=59.90;MQRankSum=0;QD=27.81;ReadPosRankSum=-0.267;SOR=0.511;VarDP=95 GT:AD:DP:GQ:PL:SB 1:0,34:34:99:1520,0:0,0,10,24 0/1:32,29:61:99:1122,0,1256:10,22,13,16 +chrX 2842816 . A AT 618.97 . AC=2;AF=0.667;AN=3;AS_AltDP=35;AS_QD=12.19;BaseQRankSum=2.981;DP=80;ExcessHet=0.0000;FS=2.389;MQ=59.45;MQRankSum=0;QD=12.19;ReadPosRankSum=0.836;SOR=0.517;VarDP=54 GT:AD:DP:GQ:PL:SB 1:1,16:17:99:342,0:0,1,8,8 0/1:18,19:37:99:316,0,313:8,10,10,9 +chrX 2842935 . T G 413 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=12.31;BaseQRankSum=-1.176;DP=74;ExcessHet=0.0000;FS=1.348;MQ=60.00;MQRankSum=0;QD=12.31;ReadPosRankSum=-0.412;SOR=0.360;VarDP=36 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:35:99:35:0,331 0/1:18,18:36:99:.:443,0,488:6,12,8,10 +chrX 2843683 . A G 594 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=9.60;BaseQRankSum=-1.401;DP=102;ExcessHet=0.0000;FS=0.960;MQ=60.00;MQRankSum=0;QD=9.60;ReadPosRankSum=0.539;SOR=0.922;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:35:99:35:0,331 0/1:38,27:65:99:.:624,0,1041:19,19,12,15 +chrX 2843876 . A G 942 . AC=1;AF=0.333;AN=3;AS_AltDP=39;AS_QD=12.96;BaseQRankSum=-1.742;DP=114;ExcessHet=0.0000;FS=3.087;MQ=60.00;MQRankSum=0;QD=12.96;ReadPosRankSum=0.149;SOR=1.096;VarDP=75 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:35:99:35:0,331 0/1:36,39:75:99:.:972,0,933:18,18,23,16 +chrX 2844137 . G A 996 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=14.66;BaseQRankSum=1.016;DP=106;ExcessHet=0.0000;FS=12.554;MQ=59.69;MQRankSum=-1.596;QD=14.66;ReadPosRankSum=-0.265;SOR=0.544;VarDP=70 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:35:99:35:0,331 0/1:32,38:70:99:.:1026,0,781:10,22,21,17 +chrX 2844366 . C G 897 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=16.85;BaseQRankSum=-0.8;DP=91;ExcessHet=0.0000;FS=4.076;MQ=60.00;MQRankSum=0;QD=16.85;ReadPosRankSum=0.972;SOR=0.263;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:35:99:35:0,331 0/1:20,35:55:99:.:927,0,475:6,14,16,19 +chrX 2844526 . A G 595 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=31.25;DP=62;ExcessHet=0.0000;FS=0.000;MQ=57.41;QD=31.25;SOR=0.892;VarDP=20 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,20:20:99:.:625,0:0,0,11,9 0/0:.:41:60:41:0,60,900 +chrX 2845059 . G A 1584 . AC=3;AF=1.00;AN=3;AS_AltDP=37;AS_QD=29.83;DP=38;ExcessHet=0.0000;FS=0.000;MQ=55.69;QD=43.62;SOR=0.859;VarDP=37 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,16:16:99:.:.:689,0:.:0,0,7,9 1|1:0,21:21:63:0|1:2845059_G_A:925,63,0:2845059:0,0,10,11 +chrX 2845083 . G A 1810 . AC=2;AF=0.667;AN=3;AS_AltDP=46;AS_QD=32.75;BaseQRankSum=-0.884;DP=49;ExcessHet=0.0000;FS=3.033;MQ=54.95;MQRankSum=0.872;QD=38.33;ReadPosRankSum=-1.124;SOR=0.144;VarDP=48 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,18:18:99:.:.:670,0:.:0,0,8,10 0|1:2,28:30:0:0|1:2845059_G_A:1170,0,0:2845059:0,2,13,15 +chrX 2845107 . G A 1142 . AC=1;AF=0.500;AN=2;AS_AltDP=29;AS_QD=30.84;BaseQRankSum=0.225;DP=58;ExcessHet=0.0000;FS=0.000;MQ=52.79;MQRankSum=-0.397;QD=30.84;ReadPosRankSum=-0.74;SOR=0.598;VarDP=38 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB .:.:19:0:19:.:.:0,0 0|1:9,29:38:99:.:0|1:2845059_G_A:1172,0,291:2845059:3,6,11,18 +chrX 2845131 . G A 1046 . AC=1;AF=0.500;AN=2;AS_AltDP=27;AS_QD=26.90;BaseQRankSum=0.956;DP=56;ExcessHet=0.0000;FS=1.349;MQ=53.67;MQRankSum=-0.972;QD=26.90;ReadPosRankSum=0.419;SOR=1.115;VarDP=40 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB .:.:15:0:15:.:.:0,0 0|1:13,27:40:99:.:0|1:2845059_G_A:1076,0,378:2845059:6,7,10,17 +chrX 2845155 . G A 998 . AC=1;AF=0.500;AN=2;AS_AltDP=26;AS_QD=25.07;BaseQRankSum=0.52;DP=41;ExcessHet=0.0000;FS=0.000;MQ=53.67;MQRankSum=-1.295;QD=25.07;ReadPosRankSum=1.54;SOR=0.775;VarDP=41 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB .:.:0:0:0:.:.:0,0 0|1:15,26:41:99:.:0|1:2845059_G_A:1028,0,443:2845059:6,9,10,16 +chrX 2845995 . G GTA 316.97 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=14.83;BaseQRankSum=1.389;DP=44;ExcessHet=0.0000;FS=4.129;MQ=59.15;MQRankSum=1.713;QD=14.83;ReadPosRankSum=-0.957;SOR=1.781;VarDP=24 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:18:99:18:0,302 0/1:13,11:24:99:.:356,0,436:5,8,2,9 +chrX 2846036 . C CATATATATAT,CATATATATATATAT 618.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=9,7;AS_QD=23.76,16.93;BaseQRankSum=0.045;DP=35;ExcessHet=0.0000;FS=0.000;MQ=59.37;MQRankSum=-1.769;QD=27.42;ReadPosRankSum=-0;SOR=0.741;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,9,0:9:99:404,0,405:0,0,4,5 0/2:8,0,7:15:99:254,280,618,0,338,317:3,5,2,5 +chrX 2846055 . ATTTTTTTTTTTTTTTT A 156.97 . AC=1;AF=0.333;AN=3;AS_AltDP=6;AS_QD=17.82;BaseQRankSum=0.366;DP=49;ExcessHet=0.0000;FS=0.000;MQ=58.34;MQRankSum=2.429;QD=17.82;ReadPosRankSum=0.204;SOR=0.941;VarDP=11 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,225 0/1:5,6:11:99:.:196,0,191:2,3,2,4 +chrX 2846128 . G A 318 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=15.13;BaseQRankSum=2.287;DP=54;ExcessHet=0.0000;FS=0.000;MQ=59.62;MQRankSum=1.132;QD=15.13;ReadPosRankSum=2.095;SOR=0.551;VarDP=23 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,225 0/1:11,12:23:99:.:348,0,258:5,6,6,6 +chrX 2846635 . G C 662 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=15.73;BaseQRankSum=-0.675;DP=79;ExcessHet=0.0000;FS=4.452;MQ=60.00;MQRankSum=0;QD=15.73;ReadPosRankSum=0.633;SOR=1.118;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,225 0/1:18,26:44:99:.:692,0,460:10,8,10,16 +chrX 2846847 . A G 989 . AC=1;AF=0.333;AN=3;AS_AltDP=39;AS_QD=15.21;BaseQRankSum=-0.248;DP=100;ExcessHet=0.0000;FS=0.968;MQ=60.00;MQRankSum=0;QD=15.21;ReadPosRankSum=3.001;SOR=0.512;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,225 0/1:28,39:67:99:.:1019,0,691:18,10,23,16 +chrX 2847278 . A C 679 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=13.38;BaseQRankSum=1.389;DP=84;ExcessHet=0.0000;FS=1.054;MQ=59.72;MQRankSum=-0.981;QD=13.38;ReadPosRankSum=-0.098;SOR=0.509;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,225 0/1:27,26:53:99:.:709,0,719:16,11,14,12 +chrX 2847329 . A T 531 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=11.69;BaseQRankSum=0.737;DP=80;ExcessHet=0.0000;FS=1.163;MQ=60.00;MQRankSum=0;QD=11.69;ReadPosRankSum=0.177;SOR=1.012;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,225 0/1:27,21:48:99:.:561,0,765:16,11,14,7 +chrX 2847533 . CA C,CAA 296.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=16,7;AS_QD=13.25,7.00;BaseQRankSum=2.266;DP=54;ExcessHet=0.0000;FS=5.639;MQ=59.65;MQRankSum=0;QD=12.44;ReadPosRankSum=0.674;SOR=1.227;VarDP=27 GT:AD:DP:GQ:PL:SB 1:1,9,0:10:99:176,0,183:0,1,8,1 1/2:3,7,7:17:71:160,71,170,83,0,159:1,2,7,7 +chrX 2847703 . A AAAAT 1089.97 . AC=2;AF=0.667;AN=3;AS_AltDP=28;AS_QD=22.14;BaseQRankSum=-0.335;DP=88;ExcessHet=0.0000;FS=4.035;MQ=60.00;MQRankSum=0;QD=22.14;ReadPosRankSum=1.281;SOR=0.275;VarDP=51 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,14:14:99:.:.:624,0:.:0,0,6,8 0|1:23,14:37:99:0|1:2847703_A_AAAAT:505,0,843:2847703:8,15,8,6 +chrX 2847715 . TAA T 909.97 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=16.95;BaseQRankSum=-0.589;DP=96;ExcessHet=0.0000;FS=7.436;MQ=60.00;MQRankSum=0;QD=16.95;ReadPosRankSum=-0.796;SOR=1.100;VarDP=56 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:36:99:36:.:.:0,878 0|1:27,29:56:99:.:1|0:2847703_A_AAAAT:949,0,942:2847703:16,11,11,18 +chrX 2847719 . TAAATAA T 909.97 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=16.95;BaseQRankSum=-0.891;DP=93;ExcessHet=0.0000;FS=7.436;MQ=60.00;MQRankSum=0;QD=16.95;ReadPosRankSum=-0.169;SOR=1.100;VarDP=56 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:36:99:36:.:.:0,878 0|1:27,29:56:99:.:1|0:2847703_A_AAAAT:949,0,942:2847703:16,11,11,18 +chrX 2848312 . A G 3706 . AC=3;AF=1.00;AN=3;AS_AltDP=114;AS_QD=32.77;DP=119;ExcessHet=0.0000;FS=0.000;MQ=59.73;QD=32.77;SOR=0.728;VarDP=114 GT:AD:DP:GQ:PL:SB 1:0,41:41:99:1315,0:0,0,22,19 1/1:0,73:73:99:2421,218,0:0,0,36,37 +chrX 2848359 . T G 1037 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=15.03;BaseQRankSum=0.59;DP=105;ExcessHet=0.0000;FS=0.894;MQ=59.92;MQRankSum=-0.904;QD=15.03;ReadPosRankSum=0.559;SOR=0.847;VarDP=71 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,785 0/1:33,38:71:99:.:1067,0,882:16,17,17,21 +chrX 2848498 . AC A 713.97 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=15.37;BaseQRankSum=0.847;DP=83;ExcessHet=0.0000;FS=4.189;MQ=60.00;MQRankSum=0;QD=15.37;ReadPosRankSum=1.14;SOR=1.372;VarDP=49 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:32:99:32:.:.:0,785 0|1:29,20:49:99:.:0|1:2848498_AC_A:753,0,1140:2848498:14,15,13,7 +chrX 2848504 . A C 744 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=15.48;BaseQRankSum=0.017;DP=83;ExcessHet=0.0000;FS=4.001;MQ=60.00;MQRankSum=0;QD=15.48;ReadPosRankSum=1.314;SOR=1.194;VarDP=50 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:32:99:32:.:.:0,785 0|1:29,21:50:99:.:0|1:2848498_AC_A:774,0,1137:2848498:14,15,13,8 +chrX 2848547 . GA G,GAAA 1988.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=46,25;AS_QD=24.96,30.80;DP=87;ExcessHet=0.0000;FS=0.000;MQ=59.71;QD=28.56;SOR=1.042;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:805,0,805:0,0,13,16 1/2:0,17,25:42:99:1223,880,990,453,0,628:0,0,17,25 +chrX 2848630 . G C 993 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=15.50;BaseQRankSum=0.497;DP=99;ExcessHet=0.0000;FS=2.074;MQ=60.00;MQRankSum=0;QD=15.50;ReadPosRankSum=0.33;SOR=0.713;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,501 0/1:29,37:66:99:.:1023,0,713:16,13,17,20 +chrX 2848979 . A T 1399 . AC=2;AF=0.667;AN=3;AS_AltDP=43;AS_QD=33.23;DP=74;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.23;SOR=0.941;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,501 1/1:0,43:43:99:.:1429,129,0:0,0,24,19 +chrX 2849145 . T C 809 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=13.11;BaseQRankSum=-1.633;DP=95;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.11;ReadPosRankSum=0.262;SOR=0.818;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,501 0/1:32,32:64:99:.:839,0,890:16,16,15,17 +chrX 2849189 . T C 845 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=13.67;BaseQRankSum=-1.479;DP=95;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.67;ReadPosRankSum=-0.868;SOR=0.796;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,501 0/1:30,34:64:99:.:875,0,796:14,16,15,19 +chrX 2849331 . G A 813 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=14.05;BaseQRankSum=1.615;DP=91;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.05;ReadPosRankSum=-0.628;SOR=0.730;VarDP=60 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:30:99:30:.:.:0,501 0|1:37,23:60:99:.:0|1:2849331_G_A:843,0,1464:2849331:18,19,12,11 +chrX 2849344 . C T 827 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=12.79;BaseQRankSum=1.282;DP=98;ExcessHet=0.0000;FS=2.108;MQ=60.00;MQRankSum=0;QD=12.79;ReadPosRankSum=0.36;SOR=0.755;VarDP=67 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:30:99:30:.:.:0,501 0|1:43,24:67:99:.:0|1:2849331_G_A:857,0,1641:2849331:20,23,13,11 +chrX 2850570 . C G 1718 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=20.33;BaseQRankSum=-0.524;DP=89;ExcessHet=0.0000;FS=1.794;MQ=55.56;MQRankSum=0.921;QD=20.33;ReadPosRankSum=1.721;SOR=0.941;VarDP=86 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:1073,0:0,0,13,12 0/1:34,27:61:99:675,0,917:17,17,10,17 +chrX 2850595 . G A 3244 . AC=3;AF=1.00;AN=3;AS_AltDP=83;AS_QD=26.27;DP=84;ExcessHet=0.0000;FS=0.000;MQ=54.00;QD=39.45;SOR=0.766;VarDP=83 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:1073,0:0,0,12,13 1/1:0,58:58:99:2201,174,0:0,0,28,30 +chrX 2850672 . T C 1535 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=16.30;BaseQRankSum=-1.192;DP=98;ExcessHet=0.0000;FS=0.000;MQ=54.24;MQRankSum=-0.044;QD=16.30;ReadPosRankSum=0.658;SOR=0.685;VarDP=96 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:922,0:0,0,12,16 0/1:41,27:68:99:643,0,1125:21,20,15,12 +chrX 2850810 . C T 747 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=18.07;BaseQRankSum=-1.581;DP=71;ExcessHet=0.0000;FS=9.300;MQ=59.29;MQRankSum=1.96;QD=18.07;ReadPosRankSum=0.454;SOR=0.273;VarDP=43 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:27:99:27:.:.:0,619 0|1:20,23:43:99:.:0|1:2850810_C_T:777,0,759:2850810:15,5,11,12 +chrX 2850823 . A G 751 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=17.36;BaseQRankSum=-1.388;DP=74;ExcessHet=0.0000;FS=11.478;MQ=59.33;MQRankSum=1.825;QD=17.36;ReadPosRankSum=0.216;SOR=0.582;VarDP=45 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:27:99:27:.:.:0,619 0|1:22,23:45:99:.:0|1:2850810_C_T:781,0,813:2850810:16,6,10,13 +chrX 2850868 . T C 2576 . AC=3;AF=1.00;AN=3;AS_AltDP=78;AS_QD=33.41;DP=79;ExcessHet=0.0000;FS=0.000;MQ=58.80;QD=33.41;SOR=0.914;VarDP=78 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:902,0:0,0,11,17 1/1:0,50:50:99:1704,150,0:0,0,32,18 +chrX 2851062 . A T 1455 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=18.33;BaseQRankSum=0.924;DP=85;ExcessHet=0.0000;FS=4.365;MQ=58.93;MQRankSum=0.73;QD=18.33;ReadPosRankSum=0.309;SOR=0.436;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,15:15:99:511,0:0,0,10,5 0/1:30,36:66:99:974,0,761:18,12,15,21 +chrX 2851293 . C T 3067 . AC=3;AF=1.00;AN=3;AS_AltDP=92;AS_QD=33.66;DP=96;ExcessHet=0.0000;FS=0.000;MQ=59.96;QD=33.66;SOR=0.737;VarDP=92 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:1023,0:0,0,14,16 1/1:0,62:62:99:2074,186,0:0,0,33,29 +chrX 2853273 . C T 3142 . AC=3;AF=1.00;AN=3;AS_AltDP=96;AS_QD=33.04;DP=97;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.04;SOR=1.190;VarDP=96 GT:AD:DP:GQ:PL:SB 1:0,36:36:99:1144,0:0,0,22,14 1/1:0,60:60:99:2028,180,0:0,0,36,24 +chrX 2854234 . G T 543 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=11.46;BaseQRankSum=0.909;DP=89;ExcessHet=0.0000;FS=4.076;MQ=59.56;MQRankSum=0;QD=11.46;ReadPosRankSum=0.762;SOR=0.289;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:34:99:34:0,727 0/1:28,22:50:99:.:573,0,721:18,10,11,11 +chrX 2854357 . T G 2741 . AC=3;AF=1.00;AN=3;AS_AltDP=92;AS_QD=30.12;DP=95;ExcessHet=0.0000;FS=0.000;MQ=59.74;QD=30.12;SOR=0.782;VarDP=92 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:952,0:0,0,16,15 1/1:0,61:61:99:1819,181,0:0,0,32,29 +chrX 2854619 . G A 1287 . AC=1;AF=0.333;AN=3;AS_AltDP=43;AS_QD=22.32;BaseQRankSum=4.217;DP=94;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=22.32;ReadPosRankSum=0.58;SOR=0.739;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,745 0/1:16,43:59:99:.:1317,0,319:8,8,22,21 +chrX 2854653 . A G 1194 . AC=1;AF=0.333;AN=3;AS_AltDP=42;AS_QD=21.47;BaseQRankSum=2.275;DP=88;ExcessHet=0.0000;FS=4.218;MQ=60.00;MQRankSum=0;QD=21.47;ReadPosRankSum=-2.103;SOR=0.658;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,745 0/1:15,42:57:99:.:1224,0,290:6,9,23,19 +chrX 2854731 . T C 1661 . AC=2;AF=0.667;AN=3;AS_AltDP=49;AS_QD=21.41;BaseQRankSum=-1.528;DP=83;ExcessHet=0.0000;FS=0.000;MQ=59.67;MQRankSum=-1.215;QD=21.41;ReadPosRankSum=-2.351;SOR=0.733;VarDP=79 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:1258,0:0,0,14,16 0/1:30,19:49:99:433,0,821:15,15,10,9 +chrX 2854751 . C T 2940 . AC=3;AF=1.00;AN=3;AS_AltDP=77;AS_QD=25.98;DP=78;ExcessHet=0.0000;FS=0.000;MQ=59.65;QD=38.57;SOR=0.719;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:1244,0:0,0,14,15 1/1:0,48:48:99:1726,144,0:0,0,25,23 +chrX 2855480 . C T 555 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=13.00;BaseQRankSum=0.945;DP=79;ExcessHet=0.0000;FS=1.154;MQ=60.00;MQRankSum=0;QD=13.00;ReadPosRankSum=1.047;SOR=0.990;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:33:99:33:0,700 0/1:24,21:45:99:.:585,0,654:12,12,9,12 +chrX 2855739 . A C 408 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=8.59;BaseQRankSum=-1.62;DP=85;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=8.59;ReadPosRankSum=-1.033;SOR=0.562;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:33:99:33:0,700 0/1:32,19:51:99:.:438,0,940:14,18,9,10 +chrX 2855902 . T G 3081 . AC=3;AF=1.00;AN=3;AS_AltDP=98;AS_QD=31.74;DP=101;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.74;SOR=0.866;VarDP=98 GT:AD:DP:GQ:PL:SB 1:0,40:40:99:1260,0:0,0,20,20 1/1:0,58:58:99:1851,174,0:0,0,25,33 +chrX 2856005 . A G 2534 . AC=3;AF=1.00;AN=3;AS_AltDP=82;AS_QD=31.27;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.27;SOR=0.742;VarDP=82 GT:AD:DP:GQ:PL:SB 1:0,36:36:99:1126,0:0,0,17,19 1/1:0,46:46:99:1438,137,0:0,0,25,21 +chrX 2856437 . A G 2870 . AC=3;AF=1.00;AN=3;AS_AltDP=95;AS_QD=30.53;DP=101;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.53;SOR=0.848;VarDP=95 GT:AD:DP:GQ:PL:SB 1:0,42:42:99:1213,0:0,0,25,17 1/1:0,53:53:99:1687,159,0:0,0,26,27 +chrX 2856659 . T G 712 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=13.02;BaseQRankSum=-0.909;DP=96;ExcessHet=0.0000;FS=1.007;MQ=60.00;MQRankSum=0;QD=13.02;ReadPosRankSum=0.479;SOR=0.644;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:38:99:38:0,870 0/1:28,29:57:99:.:742,0,752:15,13,14,15 +chrX 2856719 . CTCTA C 174.97 . AC=1;AF=0.333;AN=3;AS_AltDP=7;AS_QD=6.69;BaseQRankSum=0.371;DP=94;ExcessHet=0.0000;FS=4.210;MQ=59.75;MQRankSum=-1.814;QD=6.69;ReadPosRankSum=-0.228;SOR=0.595;VarDP=32 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:38:99:38:0,870 0/1:25,7:32:99:.:214,0,1012:8,17,4,3 +chrX 2856748 . CTATG C 1181.97 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=25.14;BaseQRankSum=-0.288;DP=88;ExcessHet=0.0000;FS=0.000;MQ=59.65;MQRankSum=-0.131;QD=39.39;ReadPosRankSum=0;SOR=0.278;VarDP=31 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,30:31:99:.:1221,0:1,0,16,14 0/0:.:55:61:55:0,61,1603 +chrX 2856752 . G *,C,GTATCTATC 797 . AC=1,1,0;AF=0.333,0.333,0.00;AN=3;AS_AltDP=0,28,0;AS_QD=0.00,21.21,0.00;BaseQRankSum=-0.238;DP=90;ExcessHet=0.0000;FS=2.771;MQ=59.46;MQRankSum=0.694;QD=21.21;ReadPosRankSum=-0.297;SOR=0.721;VarDP=39 GT:AD:DP:GQ:PL:SB 1:1,30,0,0:31:99:1221,0,1237,1237:1,0,16,14 0/2:11,0,28,0:39:99:827,921,1820,0,511,373,905,1875,505,2226:6,5,10,18 +chrX 2856788 . C CT 331.97 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=9.05;BaseQRankSum=0.414;DP=86;ExcessHet=0.0000;FS=5.654;MQ=59.46;MQRankSum=-1.596;QD=9.05;ReadPosRankSum=1.502;SOR=0.450;VarDP=41 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:29:99:29:.:.:0,829 0|1:30,11:41:99:.:0|1:2856788_C_CT:371,0,1227:2856788:9,21,6,5 +chrX 2856792 . T TATC 328.97 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=8.76;BaseQRankSum=0.04;DP=87;ExcessHet=0.0000;FS=5.513;MQ=59.47;MQRankSum=-1.625;QD=8.76;ReadPosRankSum=1.746;SOR=0.477;VarDP=42 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:29:99:29:.:.:0,829 0|1:31,11:42:99:.:0|1:2856788_C_CT:368,0,1260:2856788:10,21,6,5 +chrX 2856799 . C CATCT,CT 3684.97 . AC=3,0;AF=1.00,0.00;AN=3;AS_AltDP=68,0;AS_QD=29.84,27.00;DP=91;ExcessHet=0.0000;FS=0.000;MQ=59.54;QD=54.76;SOR=0.880;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:1226,0,1227:0,0,15,13 1/1:0,40,0:40:99:2498,169,0,1838,122,1833:0,0,16,24 +chrX 2856949 . G T 1268 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=23.60;BaseQRankSum=-0.68;DP=93;ExcessHet=0.0000;FS=7.561;MQ=59.54;MQRankSum=-0.779;QD=23.60;ReadPosRankSum=0.885;SOR=0.316;VarDP=55 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:37:99:37:.:.:0,684 0|1:22,33:55:99:.:0|1:2856949_G_T:1298,0,791:2856949:15,7,16,17 +chrX 2856956 . CATCTGTTTATCTATCT C 1382.97 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=24.52;BaseQRankSum=0.161;DP=98;ExcessHet=0.0000;FS=5.486;MQ=59.58;MQRankSum=-0.746;QD=24.52;ReadPosRankSum=0.466;SOR=0.467;VarDP=58 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:37:99:37:.:.:0,684 0|1:22,36:58:99:.:0|1:2856949_G_T:1422,0,794:2856949:14,8,17,19 +chrX 2856963 . TTATCTATCTATC TTATC,*,T 3192.97 . AC=1,1,1;AF=0.333,0.333,0.333;AN=3;AS_AltDP=26,35,16;AS_QD=29.45,0.00,32.49;DP=93;ExcessHet=0.0000;FS=0.000;MQ=59.72;QD=41.97;SOR=0.719;VarDP=77 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,26,0,0:26:99:.:.:1133,0,1133,1133:.:0,0,11,15 2|3:0,0,35,16:51:99:1|0:2856949_G_T:2099,2122,2240,660,776,759,1444,1487,0,1448:2856949:0,0,28,23 +chrX 2857170 . G A 1199 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=20.83;BaseQRankSum=-1.997;DP=90;ExcessHet=0.0000;FS=3.617;MQ=60.00;MQRankSum=0;QD=20.83;ReadPosRankSum=2.67;SOR=0.679;VarDP=59 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:31:99:31:.:.:0,770 0|1:26,33:59:99:.:0|1:2857170_G_A:1229,0,879:2857170:11,15,18,15 +chrX 2857218 . G A 1485 . AC=1;AF=0.333;AN=3;AS_AltDP=46;AS_QD=18.94;BaseQRankSum=-1.384;DP=112;ExcessHet=0.0000;FS=0.861;MQ=60.00;MQRankSum=0;QD=18.94;ReadPosRankSum=-0.394;SOR=0.538;VarDP=80 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:31:99:31:.:.:0,770 0|1:34,46:80:99:.:0|1:2857170_G_A:1515,0,1054:2857170:14,20,21,25 +chrX 2857289 . CT C 952.97 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=15.50;BaseQRankSum=1.066;DP=95;ExcessHet=0.0000;FS=5.139;MQ=60.00;MQRankSum=0;QD=15.50;ReadPosRankSum=0.236;SOR=1.449;VarDP=64 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:31:99:31:.:.:0,770 0|1:37,27:64:99:.:0|1:2857289_CT_C:992,0,1434:2857289:18,19,9,18 +chrX 2857315 . C A 1056 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=16.97;BaseQRankSum=2.078;DP=95;ExcessHet=0.0000;FS=2.073;MQ=60.00;MQRankSum=0;QD=16.97;ReadPosRankSum=-1.42;SOR=0.997;VarDP=64 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:31:99:31:.:.:0,770 0|1:34,30:64:99:.:0|1:2857289_CT_C:1086,0,1317:2857289:16,18,12,18 +chrX 2857406 . A ATATC 4050.97 . AC=3;AF=1.00;AN=3;AS_AltDP=92;AS_QD=32.27;DP=95;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.46;SOR=0.737;VarDP=92 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:1260,0:0,0,17,11 1/1:0,64:64:99:2830,193,0:0,0,30,34 +chrX 2857560 . A G 668 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=11.63;BaseQRankSum=-0.114;DP=89;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=11.63;ReadPosRankSum=-0.971;SOR=0.693;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,768 0/1:32,28:60:99:.:698,0,842:16,16,14,14 +chrX 2857650 . G C 1901 . AC=2;AF=0.667;AN=3;AS_AltDP=68;AS_QD=18.39;BaseQRankSum=-2.581;DP=112;ExcessHet=0.0000;FS=0.763;MQ=60.00;MQRankSum=0;QD=18.39;ReadPosRankSum=-0.881;SOR=0.821;VarDP=105 GT:AD:DP:GQ:PL:SB 1:0,34:34:99:1102,0:0,0,16,18 0/1:37,34:71:99:829,0,1044:18,19,15,19 +chrX 2857835 . A G 1540 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=20.13;BaseQRankSum=-0.084;DP=81;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=20.13;ReadPosRankSum=0.548;SOR=0.662;VarDP=78 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:919,0:0,0,15,12 0/1:27,24:51:99:651,0,740:13,14,10,14 +chrX 2857957 . A T 894 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=14.44;BaseQRankSum=-0.71;DP=107;ExcessHet=0.0000;FS=5.014;MQ=60.00;MQRankSum=0;QD=14.44;ReadPosRankSum=0.864;SOR=0.808;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:39:99:39:0,909 0/1:29,35:64:99:.:924,0,755:17,12,15,20 +chrX 2858086 . A AT 1597.97 . AC=2;AF=0.667;AN=3;AS_AltDP=64;AS_QD=15.02;BaseQRankSum=-0.449;DP=119;ExcessHet=0.0000;FS=6.227;MQ=60.00;MQRankSum=0;QD=15.02;ReadPosRankSum=0.404;SOR=0.325;VarDP=109 GT:AD:DP:GQ:PL:SB 1:0,35:35:99:1017,0:0,0,19,16 0/1:45,29:74:99:620,0,1123:30,15,16,13 +chrX 2858112 . T C 1939 . AC=2;AF=0.667;AN=3;AS_AltDP=69;AS_QD=17.58;BaseQRankSum=-1.402;DP=116;ExcessHet=0.0000;FS=2.611;MQ=60.00;MQRankSum=0;QD=17.58;ReadPosRankSum=0.372;SOR=0.463;VarDP=112 GT:AD:DP:GQ:PL:SB 1:0,36:36:99:1155,0:0,0,20,16 0/1:43,33:76:99:814,0,1192:29,14,22,11 +chrX 2858277 . AT A 2772.97 . AC=2;AF=0.667;AN=3;AS_AltDP=75;AS_QD=26.78;BaseQRankSum=0.556;DP=108;ExcessHet=0.0000;FS=10.758;MQ=60.00;MQRankSum=0;QD=26.78;ReadPosRankSum=0.886;SOR=0.199;VarDP=105 GT:AD:DP:GQ:PL:SB 1:1,44:45:99:1740,0:0,1,18,26 0/1:29,31:60:99:1072,0,990:8,21,16,15 +chrX 2858331 . T C 731 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=12.27;BaseQRankSum=-0.96;DP=101;ExcessHet=0.0000;FS=6.954;MQ=60.00;MQRankSum=0;QD=12.27;ReadPosRankSum=-1.007;SOR=1.324;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:38:99:38:0,977 0/1:31,31:62:99:.:761,0,822:17,14,11,20 +chrX 2858645 . G T 1783 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=21.58;BaseQRankSum=0.172;DP=88;ExcessHet=0.0000;FS=4.766;MQ=60.00;MQRankSum=0;QD=21.58;ReadPosRankSum=-0.191;SOR=0.298;VarDP=84 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:988,0:0,0,15,15 0/1:25,29:54:99:825,0,687:17,8,17,12 +chrX 2859066 . T G 2868 . AC=3;AF=1.00;AN=3;AS_AltDP=88;AS_QD=32.93;DP=90;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.93;SOR=1.179;VarDP=88 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:963,0:0,0,9,19 1/1:0,60:60:99:1935,179,0:0,0,26,34 +chrX 2859273 . A G 3558 . AC=3;AF=1.00;AN=3;AS_AltDP=84;AS_QD=22.74;BaseQRankSum=-0.644;DP=87;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=42.21;ReadPosRankSum=0.817;SOR=0.242;VarDP=85 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,32:32:99:.:.:1349,0:.:0,0,15,17 1|1:1,52:53:99:0|1:2859273_A_G:2239,114,0:2859273:0,1,26,26 +chrX 2859279 . ATAG A 3632.97 . AC=3;AF=1.00;AN=3;AS_AltDP=86;AS_QD=29.67;BaseQRankSum=-0.489;DP=87;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=42.21;ReadPosRankSum=1.155;SOR=0.242;VarDP=87 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,33:33:99:.:.:1388,0:.:0,0,16,17 1|1:1,53:54:99:0|1:2859273_A_G:2284,117,0:2859273:0,1,26,27 +chrX 2859314 . C T 2610 . AC=3;AF=1.00;AN=3;AS_AltDP=80;AS_QD=33.00;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.00;SOR=0.743;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:884,0:0,0,14,12 1/1:0,54:54:99:1756,162,0:0,0,27,27 +chrX 2859519 . A G 2664 . AC=3;AF=1.00;AN=3;AS_AltDP=83;AS_QD=32.46;DP=87;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.46;SOR=0.717;VarDP=83 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:838,0:0,0,11,15 1/1:0,57:57:99:1856,171,0:0,0,31,26 +chrX 2859944 . C T 3037 . AC=3;AF=1.00;AN=3;AS_AltDP=93;AS_QD=32.98;DP=94;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.98;SOR=0.804;VarDP=93 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:1012,0:0,0,13,18 1/1:0,62:62:99:2055,186,0:0,0,36,26 +chrX 2860281 . G A 3206 . AC=3;AF=1.00;AN=3;AS_AltDP=100;AS_QD=32.04;BaseQRankSum=2.223;DP=103;ExcessHet=0.0000;FS=3.141;MQ=60.00;MQRankSum=0;QD=32.04;ReadPosRankSum=-1.155;SOR=0.351;VarDP=101 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:988,0:0,0,15,14 1/1:1,71:72:99:2248,206,0:0,1,37,34 +chrX 2860392 . C G 2611 . AC=3;AF=1.00;AN=3;AS_AltDP=78;AS_QD=33.86;DP=84;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.86;SOR=0.976;VarDP=78 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:963,0:0,0,15,13 1/1:0,50:50:99:1678,150,0:0,0,19,31 +chrX 2860485 . A G 3628 . AC=3;AF=1.00;AN=3;AS_AltDP=84;AS_QD=28.77;DP=84;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.55;SOR=0.897;VarDP=84 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,32:32:99:.:.:1420,0:.:0,0,14,18 1|1:0,52:52:99:0|1:2860485_A_G:2238,157,0:2860485:0,0,24,28 +chrX 2860505 . C A 3687 . AC=3;AF=1.00;AN=3;AS_AltDP=86;AS_QD=25.57;DP=86;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.22;SOR=0.892;VarDP=86 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,35:35:99:.:.:1514,0:.:0,0,16,19 1|1:0,51:51:99:0|1:2860485_A_G:2203,153,0:2860485:0,0,23,28 +chrX 2860546 . A G 2476 . AC=3;AF=1.00;AN=3;AS_AltDP=77;AS_QD=32.55;DP=79;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.55;SOR=0.772;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:873,0:0,0,13,13 1/1:0,51:51:99:1633,152,0:0,0,27,24 +chrX 2860643 . CTT C 1231.97 . AC=3;AF=1.00;AN=3;AS_AltDP=41;AS_QD=30.26;BaseQRankSum=-0.868;DP=67;ExcessHet=0.0000;FS=4.771;MQ=60.00;MQRankSum=0;QD=30.26;ReadPosRankSum=0.744;SOR=1.513;VarDP=42 GT:AD:DP:GQ:PL:SB 1:0,14:14:99:428,0:0,0,3,11 1/1:1,27:28:74:843,74,0:1,0,10,17 +chrX 2860755 . A T 2652 . AC=3;AF=1.00;AN=3;AS_AltDP=78;AS_QD=34.38;DP=79;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=34.38;SOR=1.493;VarDP=78 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:904,0:0,0,18,8 1/1:0,52:52:99:1778,156,0:0,0,33,19 +chrX 2860791 . A G 2813 . AC=3;AF=1.00;AN=3;AS_AltDP=88;AS_QD=32.31;DP=94;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.31;SOR=1.531;VarDP=88 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:877,0:0,0,18,10 1/1:0,60:60:99:1966,180,0:0,0,40,20 +chrX 2860941 . G T 4073 . AC=3;AF=1.00;AN=3;AS_AltDP=95;AS_QD=29.72;DP=96;ExcessHet=0.0000;FS=0.000;MQ=59.85;QD=43.19;SOR=0.848;VarDP=95 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,29:29:99:.:.:1256,0:.:0,0,14,15 1|1:0,66:66:99:0|1:2860941_G_T:2847,199,0:2860941:0,0,37,29 +chrX 2860955 . T C 4048 . AC=3;AF=1.00;AN=3;AS_AltDP=94;AS_QD=30.22;DP=97;ExcessHet=0.0000;FS=0.000;MQ=59.86;QD=43.38;SOR=0.736;VarDP=94 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,28:28:99:.:.:1221,0:.:0,0,13,15 1|1:0,66:66:99:0|1:2860941_G_T:2857,199,0:2860941:0,0,35,31 +chrX 2861130 . G A 2976 . AC=3;AF=1.00;AN=3;AS_AltDP=89;AS_QD=33.40;BaseQRankSum=3.474;DP=94;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=33.40;ReadPosRankSum=1.26;SOR=0.271;VarDP=90 GT:AD:DP:GQ:PL:SB 1:0,35:35:99:1197,0:0,0,18,17 1/1:1,54:55:99:1809,155,0:0,1,24,30 +chrX 2861170 . G A 3055 . AC=3;AF=1.00;AN=3;AS_AltDP=92;AS_QD=33.53;DP=97;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.53;SOR=0.737;VarDP=92 GT:AD:DP:GQ:PL:SB 1:0,37:37:99:1241,0:0,0,21,16 1/1:0,55:55:99:1844,165,0:0,0,26,29 +chrX 2861289 . T C 2636 . AC=3;AF=1.00;AN=3;AS_AltDP=85;AS_QD=31.00;BaseQRankSum=1.768;DP=89;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=31.00;ReadPosRankSum=0.209;SOR=0.274;VarDP=86 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:873,0:0,0,11,16 1/1:1,58:59:99:1793,150,0:0,1,29,29 +chrX 2861529 . A G 2828 . AC=3;AF=1.00;AN=3;AS_AltDP=88;AS_QD=32.48;DP=93;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.48;SOR=0.739;VarDP=88 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:873,0:0,0,14,13 1/1:0,61:61:99:1985,183,0:0,0,31,30 +chrX 2862078 . T TGGAA,A 3535 . AC=3,0;AF=1.00,0.00;AN=3;AS_AltDP=79,1;AS_QD=29.28,25.97;DP=88;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.56;SOR=0.850;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,37,0:37:99:1652,0,1652:0,0,20,17 1/1:0,42,1:43:99:1913,129,0,1431,130,1430:0,0,23,20 +chrX 2862224 . G A 2863 . AC=3;AF=1.00;AN=3;AS_AltDP=88;AS_QD=32.51;BaseQRankSum=2.317;DP=90;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=32.51;ReadPosRankSum=1.034;SOR=0.223;VarDP=89 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:1090,0:0,0,12,20 1/1:1,56:57:99:1803,161,0:1,0,32,24 +chrX 2862278 . A C 2732 . AC=3;AF=1.00;AN=3;AS_AltDP=87;AS_QD=31.75;DP=87;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.75;SOR=0.763;VarDP=87 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:928,0:0,0,13,15 1/1:0,59:59:99:1834,176,0:0,0,32,27 +chrX 2862492 . C T 2750 . AC=3;AF=1.00;AN=3;AS_AltDP=85;AS_QD=32.71;DP=86;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.71;SOR=0.815;VarDP=85 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:1095,0:0,0,18,15 1/1:0,52:52:99:1685,156,0:0,0,27,25 +chrX 2862706 . C T 2450 . AC=3;AF=1.00;AN=3;AS_AltDP=76;AS_QD=32.63;DP=77;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.63;SOR=0.920;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:823,0:0,0,9,15 1/1:0,52:52:99:1657,155,0:0,0,25,27 +chrX 2862785 . C T 3597 . AC=3;AF=1.00;AN=3;AS_AltDP=82;AS_QD=29.27;BaseQRankSum=-0.151;DP=89;ExcessHet=0.0000;FS=0.000;MQ=59.88;MQRankSum=0;QD=43.70;ReadPosRankSum=1.157;SOR=0.289;VarDP=83 GT:AD:DP:GQ:PL:SB 1:1,23:24:99:990,0:1,0,13,10 1/1:0,59:59:99:2637,180,0:0,0,30,27 +chrX 2862788 . T A 3591 . AC=3;AF=1.00;AN=3;AS_AltDP=83;AS_QD=26.87;BaseQRankSum=-0.39;DP=92;ExcessHet=0.0000;FS=0.000;MQ=59.88;MQRankSum=0;QD=43.11;ReadPosRankSum=0.668;SOR=0.275;VarDP=84 GT:AD:DP:GQ:PL:SB 1:1,25:26:99:1049,0:1,0,13,12 1/1:0,58:58:99:2572,171,0:0,0,31,27 +chrX 2863080 . CT C 1597.97 . AC=3;AF=1.00;AN=3;AS_AltDP=59;AS_QD=27.75;DP=79;ExcessHet=0.0000;FS=0.000;MQ=59.93;QD=27.75;SOR=1.123;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,18:18:99:498,0:0,0,12,6 1/1:0,41:41:99:1139,123,0:0,0,23,18 +chrX 2863179 . G A 2466 . AC=3;AF=1.00;AN=3;AS_AltDP=77;AS_QD=32.00;BaseQRankSum=1.993;DP=82;ExcessHet=0.0000;FS=3.736;MQ=59.13;MQRankSum=-0.134;QD=32.00;ReadPosRankSum=0.925;SOR=0.785;VarDP=78 GT:AD:DP:GQ:PL:SB 1:1,29:30:99:918,0:0,1,19,10 1/1:0,48:48:99:1578,144,0:0,0,26,22 +chrX 2863219 . T C 2306 . AC=3;AF=1.00;AN=3;AS_AltDP=74;AS_QD=31.15;BaseQRankSum=-0.471;DP=83;ExcessHet=0.0000;FS=4.601;MQ=59.07;MQRankSum=-0.134;QD=31.15;ReadPosRankSum=-1.503;SOR=1.373;VarDP=75 GT:AD:DP:GQ:PL:SB 1:1,29:30:99:887,0:0,1,20,9 1/1:0,45:45:99:1449,135,0:0,0,29,16 +chrX 2864264 . A T 2877 . AC=3;AF=1.00;AN=3;AS_AltDP=93;AS_QD=31.26;DP=98;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.26;SOR=0.758;VarDP=93 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:1011,0:0,0,18,15 1/1:0,60:60:99:1896,180,0:0,0,27,33 +chrX 2864385 . AT A 1487.97 . AC=3;AF=1.00;AN=3;AS_AltDP=59;AS_QD=25.88;DP=80;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=25.88;SOR=0.950;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:620,0:0,0,12,12 1/1:0,35:35:99:907,105,0:0,0,21,14 +chrX 2864414 . T C 2126 . AC=3;AF=1.00;AN=3;AS_AltDP=67;AS_QD=32.18;DP=68;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.18;SOR=0.990;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:902,0:0,0,13,14 1/1:0,40:40:99:1254,119,0:0,0,25,15 +chrX 2864592 . G A 2497 . AC=3;AF=1.00;AN=3;AS_AltDP=75;AS_QD=33.69;DP=80;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.69;SOR=0.719;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:844,0:0,0,13,13 1/1:0,49:49:99:1683,147,0:0,0,24,25 +chrX 2865066 . A G 2911 . AC=3;AF=1.00;AN=3;AS_AltDP=92;AS_QD=31.97;DP=93;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.97;SOR=0.737;VarDP=92 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:1042,0:0,0,15,17 1/1:0,60:60:99:1899,180,0:0,0,30,30 +chrX 2865514 . T G 2644 . AC=3;AF=1.00;AN=3;AS_AltDP=85;AS_QD=31.46;DP=86;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.46;SOR=1.233;VarDP=85 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:1007,0:0,0,22,10 1/1:0,53:53:99:1667,158,0:0,0,30,23 +chrX 2865735 . T C 2542 . AC=3;AF=1.00;AN=3;AS_AltDP=78;AS_QD=32.97;DP=79;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.97;SOR=0.914;VarDP=78 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:1058,0:0,0,19,13 1/1:0,46:46:99:1514,138,0:0,0,24,22 +chrX 2865874 . T TCA 4656.97 . AC=3;AF=1.00;AN=3;AS_AltDP=107;AS_QD=32.27;DP=114;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.89;SOR=0.750;VarDP=107 GT:AD:DP:GQ:PL:SB 1:0,41:41:99:1811,0:0,0,22,19 1/1:0,66:66:99:2885,198,0:0,0,33,33 +chrX 2866010 . G A 3269 . AC=3;AF=1.00;AN=3;AS_AltDP=99;AS_QD=32.99;BaseQRankSum=3.75;DP=104;ExcessHet=0.0000;FS=3.468;MQ=60.00;MQRankSum=0;QD=32.99;ReadPosRankSum=0.133;SOR=0.587;VarDP=100 GT:AD:DP:GQ:PL:SB 1:1,38:39:99:1290,0:1,0,14,24 1/1:0,61:61:99:2009,183,0:0,0,30,31 +chrX 2866836 . TTA T 3696.97 . AC=3;AF=1.00;AN=3;AS_AltDP=85;AS_QD=28.45;DP=90;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.95;SOR=0.867;VarDP=85 GT:AD:DP:GQ:PL:SB 1:0,34:34:99:1496,0:0,0,23,11 1/1:0,51:51:99:2240,154,0:0,0,23,28 +chrX 2867297 . C CA 2664.97 . AC=3;AF=1.00;AN=3;AS_AltDP=83;AS_QD=32.58;DP=89;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.58;SOR=0.766;VarDP=83 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:880,0:0,0,15,12 1/1:0,56:56:99:1824,168,0:0,0,28,28 +chrX 2867387 . G T 2237 . AC=3;AF=1.00;AN=3;AS_AltDP=72;AS_QD=31.49;DP=78;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.49;SOR=1.308;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:854,0:0,0,17,9 1/1:0,46:46:99:1413,137,0:0,0,28,18 +chrX 2867997 . G A 3125 . AC=3;AF=1.00;AN=3;AS_AltDP=95;AS_QD=33.21;DP=96;ExcessHet=0.0000;FS=0.000;MQ=59.88;QD=33.21;SOR=0.848;VarDP=95 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:798,0:0,0,11,12 1/1:0,72:72:99:2357,216,0:0,0,33,39 +chrX 2869016 . T TA 1848.97 . AC=3;AF=1.00;AN=3;AS_AltDP=78;AS_QD=24.21;DP=93;ExcessHet=0.0000;FS=0.000;MQ=59.82;QD=24.21;SOR=0.798;VarDP=78 GT:AD:DP:GQ:PL:SB 1:0,22:22:99:546,0:0,0,7,15 1/1:0,56:56:99:1342,166,0:0,0,30,26 +chrX 2869414 . G A 2198 . AC=3;AF=1.00;AN=3;AS_AltDP=68;AS_QD=32.76;DP=70;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.76;SOR=0.693;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:913,0:0,0,12,16 1/1:0,40:40:99:1315,120,0:0,0,22,18 +chrX 2869857 . C G 3076 . AC=3;AF=1.00;AN=3;AS_AltDP=95;AS_QD=32.69;DP=99;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.69;SOR=0.714;VarDP=95 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:977,0:0,0,17,13 1/1:0,65:65:99:2129,195,0:0,0,31,34 +chrX 2871005 . A AT 1997.97 . AC=3;AF=1.00;AN=3;AS_AltDP=79;AS_QD=25.15;BaseQRankSum=-0.344;DP=89;ExcessHet=0.0000;FS=3.048;MQ=60.00;MQRankSum=0;QD=25.15;ReadPosRankSum=-0.109;SOR=0.121;VarDP=81 GT:AD:DP:GQ:PL:SB 1:2,21:23:99:493,0:2,0,12,9 1/1:0,58:58:99:1544,174,0:0,0,29,29 +chrX 2871383 . C T 3251 . AC=3;AF=1.00;AN=3;AS_AltDP=78;AS_QD=30.67;BaseQRankSum=2.745;DP=83;ExcessHet=0.0000;FS=3.661;MQ=60.00;MQRankSum=0;QD=41.53;ReadPosRankSum=-0.476;SOR=0.733;VarDP=79 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,25:25:99:.:.:1065,0:.:0,0,15,10 1|1:1,53:54:99:0|1:2871383_C_T:2216,144,0:2871383:0,1,30,23 +chrX 2871387 . TA T 3224.97 . AC=3;AF=1.00;AN=3;AS_AltDP=78;AS_QD=30.54;BaseQRankSum=-0.297;DP=81;ExcessHet=0.0000;FS=3.791;MQ=60.00;MQRankSum=0;QD=41.32;ReadPosRankSum=-0.163;SOR=0.824;VarDP=79 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,26:26:99:.:.:1091,0:.:0,0,15,11 1|1:1,52:53:99:0|1:2871383_C_T:2173,141,0:2871383:0,1,31,21 +chrX 2871689 . CAAATAAATAAATAAAT C 3026.97 . AC=3;AF=1.00;AN=3;AS_AltDP=70;AS_QD=32.15;DP=106;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.80;SOR=1.329;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:1063,0:0,0,8,17 1/1:0,45:45:99:2003,139,0:0,0,18,27 +chrX 2871807 . T G 3306 . AC=3;AF=1.00;AN=3;AS_AltDP=109;AS_QD=30.33;BaseQRankSum=-0.608;DP=113;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=30.33;ReadPosRankSum=-0.51;SOR=0.337;VarDP=110 GT:AD:DP:GQ:PL:SB 1:0,42:42:99:1289,0:0,0,25,17 1/1:1,67:68:99:2047,168,0:1,0,36,31 +chrX 2872107 . T C 3271 . AC=3;AF=1.00;AN=3;AS_AltDP=101;AS_QD=32.05;BaseQRankSum=2.483;DP=106;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=32.05;ReadPosRankSum=-0.35;SOR=0.839;VarDP=103 GT:AD:DP:GQ:PL:SB 1:2,37:39:99:1156,0:1,1,19,18 1/1:0,64:64:99:2145,192,0:0,0,28,36 +chrX 2873040 . T C 1713 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=21.52;BaseQRankSum=-0.713;DP=84;ExcessHet=0.0000;FS=0.942;MQ=60.00;MQRankSum=0;QD=21.52;ReadPosRankSum=-0.7;SOR=0.871;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:858,0:0,0,16,11 0/1:23,31:54:99:885,0,626:13,10,19,12 +chrX 2876033 . CTTTTTTTT C,CTTTTTTTTT 1065.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=25,7;AS_QD=26.92,12.44;BaseQRankSum=-0.471;DP=59;ExcessHet=0.0000;FS=10.958;MQ=59.72;MQRankSum=0;QD=32.50;ReadPosRankSum=0.197;SOR=2.058;VarDP=34 GT:AD:DP:GQ:PL:SB 1:2,11,0:13:99:439,0,478:2,0,2,9 1/2:0,14,7:21:99:666,112,388,573,0,554:0,0,6,15 +chrX 2876420 . G T 1337 . AC=2;AF=0.667;AN=3;AS_AltDP=46;AS_QD=17.75;BaseQRankSum=2.37;DP=78;ExcessHet=0.0000;FS=6.102;MQ=60.00;MQRankSum=0;QD=17.75;ReadPosRankSum=0.208;SOR=0.598;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,20:20:99:670,0:0,0,10,10 0/1:31,26:57:99:697,0,780:19,12,11,15 +chrX 2876817 . T C 1045 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=29.86;DP=96;ExcessHet=0.0000;FS=0.000;MQ=58.58;QD=29.86;SOR=0.804;VarDP=36 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,36:36:99:.:1075,0:0,0,17,19 0/0:.:57:92:57:0,92,1310 +chrX 2879217 . A ATAT 1184.97 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=23.54;BaseQRankSum=-1.205;DP=87;ExcessHet=0.0000;FS=1.090;MQ=60.00;MQRankSum=0;QD=23.54;ReadPosRankSum=0.392;SOR=0.824;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,537 0/1:21,31:52:99:.:1224,0,789:10,11,17,14 +chrX 2879288 . G T 37 . AC=1;AF=0.333;AN=3;AS_AltDP=7;AS_QD=1.63;BaseQRankSum=-0.987;DP=80;ExcessHet=0.0000;FS=15.115;MQ=59.57;MQRankSum=-1.16;QD=1.63;ReadPosRankSum=1.786;SOR=3.956;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,537 0/1:34,7:41:67:.:67,0,973:18,16,7,0 +chrX 2879754 . T C 747 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=14.39;BaseQRankSum=0.847;DP=87;ExcessHet=0.0000;FS=3.720;MQ=60.00;MQRankSum=0;QD=14.39;ReadPosRankSum=2.1;SOR=0.477;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,537 0/1:25,29:54:99:.:777,0,632:15,10,14,15 +chrX 2879854 . T A 831 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=14.59;BaseQRankSum=-0.056;DP=92;ExcessHet=0.0000;FS=3.582;MQ=60.00;MQRankSum=0;QD=14.59;ReadPosRankSum=-2.627;SOR=1.214;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,537 0/1:28,31:59:99:.:861,0,716:14,14,12,19 +chrX 2880164 . A ATGTGTG 303.97 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=8.37;BaseQRankSum=-0.536;DP=94;ExcessHet=0.0000;FS=1.238;MQ=59.57;MQRankSum=0;QD=8.37;ReadPosRankSum=1.536;SOR=1.061;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,537 0/1:24,17:41:99:.:343,0,894:12,12,10,7 +chrX 2880415 . AGT A 1421.97 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=20.29;BaseQRankSum=-1.589;DP=93;ExcessHet=0.0000;FS=4.940;MQ=60.00;MQRankSum=0;QD=20.29;ReadPosRankSum=-0.759;SOR=0.358;VarDP=72 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,28:29:99:.:.:926,0:.:1,0,16,12 0|1:24,19:43:99:0|1:2880415_AGT_A:535,0,950:2880415:8,16,8,11 +chrX 2880439 . T C 690 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=14.69;BaseQRankSum=-0.933;DP=83;ExcessHet=0.0000;FS=2.612;MQ=60.00;MQRankSum=0;QD=14.69;ReadPosRankSum=-0.825;SOR=1.258;VarDP=49 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:32:99:32:.:.:0,526 0|1:22,27:49:99:.:1|0:2880415_AGT_A:720,0,807:2880415:9,13,8,19 +chrX 2882254 . G C 2628 . AC=3;AF=1.00;AN=3;AS_AltDP=82;AS_QD=32.41;DP=87;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.41;SOR=1.445;VarDP=82 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:1116,0:0,0,8,25 1/1:0,49:49:99:1542,146,0:0,0,21,28 +chrX 2882583 . G T 1495 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=21.48;BaseQRankSum=0.83;DP=73;ExcessHet=0.0000;FS=3.939;MQ=60.00;MQRankSum=0;QD=21.48;ReadPosRankSum=-0.954;SOR=1.288;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:966,0:0,0,19,14 0/1:17,21:38:99:559,0,396:9,8,16,5 +chrX 2882636 . A G 1425 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=19.93;BaseQRankSum=-1.764;DP=74;ExcessHet=0.0000;FS=5.318;MQ=60.00;MQRankSum=0;QD=19.93;ReadPosRankSum=-0.13;SOR=0.764;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:921,0:0,0,18,14 0/1:20,21:41:99:534,0,552:8,12,12,9 +chrX 2882959 . G A 1594 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=18.45;BaseQRankSum=1.618;DP=96;ExcessHet=0.0000;FS=7.630;MQ=60.00;MQRankSum=0;QD=18.45;ReadPosRankSum=0.025;SOR=0.233;VarDP=88 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:1051,0:0,0,19,13 0/1:34,22:56:99:573,0,909:25,9,12,10 +chrX 2882985 . T A 1382 . AC=2;AF=0.667;AN=3;AS_AltDP=48;AS_QD=16.81;BaseQRankSum=0.344;DP=88;ExcessHet=0.0000;FS=5.679;MQ=60.00;MQRankSum=0;QD=16.81;ReadPosRankSum=0.487;SOR=0.317;VarDP=84 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:947,0:0,0,14,15 0/1:36,19:55:99:465,0,1016:24,12,12,7 +chrX 2883114 . C A 1644 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=18.40;BaseQRankSum=0.504;DP=99;ExcessHet=0.0000;FS=2.862;MQ=60.00;MQRankSum=0;QD=18.40;ReadPosRankSum=-0.821;SOR=0.624;VarDP=91 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:978,0:0,0,15,15 0/1:34,27:61:99:696,0,878:15,19,15,12 +chrX 2883264 . T TATA 672.97 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=15.15;BaseQRankSum=0.176;DP=102;ExcessHet=0.0000;FS=6.129;MQ=60.00;MQRankSum=0;QD=15.15;ReadPosRankSum=0.672;SOR=1.609;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:35:99:35:0,600 0/1:28,19:47:99:.:712,0,1119:14,14,6,13 +chrX 2884020 . G GC 827.97 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=12.94;BaseQRankSum=2.988;DP=106;ExcessHet=0.0000;FS=2.063;MQ=60.00;MQRankSum=0;QD=12.94;ReadPosRankSum=1.179;SOR=1.074;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:35:99:35:0,600 0/1:37,30:67:99:.:867,0,1114:19,18,18,12 +chrX 2884141 . A C 950 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=14.00;BaseQRankSum=-0.161;DP=108;ExcessHet=0.0000;FS=4.783;MQ=60.00;MQRankSum=0;QD=14.00;ReadPosRankSum=0.307;SOR=1.315;VarDP=70 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:35:99:35:0,600 0/1:32,38:70:99:.:980,0,798:17,15,25,13 +chrX 2884315 . G A 1188 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=22.15;BaseQRankSum=0.719;DP=91;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=22.15;ReadPosRankSum=2.071;SOR=0.655;VarDP=55 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:35:99:35:.:.:0,600 0|1:24,31:55:99:.:0|1:2884315_G_A:1218,0,914:2884315:9,15,12,19 +chrX 2884327 . G A 1255 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=21.07;BaseQRankSum=1.142;DP=96;ExcessHet=0.0000;FS=0.988;MQ=60.00;MQRankSum=0;QD=21.07;ReadPosRankSum=1.947;SOR=0.549;VarDP=61 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:35:99:35:.:.:0,600 0|1:27,34:61:99:.:0|1:2884315_G_A:1285,0,1000:2884315:10,17,14,20 +chrX 2884355 . T C 1307 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=22.28;BaseQRankSum=-1.09;DP=97;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=22.28;ReadPosRankSum=0.709;SOR=0.599;VarDP=60 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:35:99:35:.:.:0,600 0|1:26,34:60:99:.:0|1:2884355_T_C:1337,0,989:2884355:10,16,14,20 +chrX 2884356 . T C 1307 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=22.28;BaseQRankSum=0.75;DP=98;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=22.28;ReadPosRankSum=0.802;SOR=0.599;VarDP=60 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:35:99:35:.:.:0,600 0|1:26,34:60:99:.:0|1:2884355_T_C:1337,0,989:2884355:10,16,14,20 +chrX 2884685 . T C 2408 . AC=3;AF=1.00;AN=3;AS_AltDP=73;AS_QD=33.40;DP=77;ExcessHet=0.0000;FS=0.000;MQ=58.08;QD=33.40;SOR=0.720;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:909,0:0,0,16,11 1/1:0,46:46:99:1529,138,0:0,0,20,26 +chrX 2884950 . A T 1031 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=15.38;BaseQRankSum=0.693;DP=106;ExcessHet=0.0000;FS=13.193;MQ=57.69;MQRankSum=-1.705;QD=15.38;ReadPosRankSum=-0.609;SOR=1.815;VarDP=69 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:36:99:36:0,769 0/1:31,38:69:99:.:1061,0,819:14,17,27,11 +chrX 2885087 . GC G 2855.97 . AC=3;AF=1.00;AN=3;AS_AltDP=79;AS_QD=30.81;DP=87;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=36.65;SOR=0.824;VarDP=79 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:1034,0:0,0,9,19 1/1:0,51:51:99:1861,154,0:0,0,28,23 +chrX 2885235 . A G 2893 . AC=3;AF=1.00;AN=3;AS_AltDP=90;AS_QD=32.48;DP=94;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.48;SOR=1.166;VarDP=90 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:1033,0:0,0,9,21 1/1:0,60:60:99:1890,180,0:0,0,27,33 +chrX 2885262 . A G 474 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=8.84;BaseQRankSum=0.694;DP=86;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=8.84;ReadPosRankSum=-1.729;SOR=0.784;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:26:99:26:0,576 0/1:36,21:57:99:.:504,0,960:18,18,10,11 +chrX 2885346 . G A 1672 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=19.12;BaseQRankSum=0.693;DP=95;ExcessHet=0.0000;FS=2.985;MQ=60.00;MQRankSum=0;QD=19.12;ReadPosRankSum=-0.76;SOR=0.394;VarDP=89 GT:AD:DP:GQ:PL:SB 1:0,20:20:99:630,0:0,0,12,8 0/1:31,38:69:99:1072,0,820:19,12,18,20 +chrX 2885428 . T C 2762 . AC=3;AF=1.00;AN=3;AS_AltDP=88;AS_QD=31.73;DP=93;ExcessHet=0.0000;FS=0.000;MQ=59.95;QD=31.73;SOR=0.739;VarDP=88 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:743,0:0,0,14,9 1/1:0,65:65:99:2049,194,0:0,0,31,34 +chrX 2885574 . CAA CA,C 1220.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=28,24;AS_QD=26.68,25.44;BaseQRankSum=-0.425;DP=87;ExcessHet=0.0000;FS=6.241;MQ=59.63;MQRankSum=-0.198;QD=22.91;ReadPosRankSum=-1.04;SOR=0.061;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,14,0:14:99:340,0,340:0,0,5,9 1/2:3,14,24:41:99:920,487,433,233,0,399:0,3,19,15 +chrX 2885608 . AATTAAATC A 3517.97 . AC=3;AF=1.00;AN=3;AS_AltDP=81;AS_QD=28.30;DP=92;ExcessHet=0.0000;FS=0.000;MQ=59.65;QD=43.91;SOR=0.768;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,20:20:99:891,0:0,0,10,10 1/1:0,61:61:99:2666,184,0:0,0,29,32 +chrX 2885647 . T G 2057 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=21.52;BaseQRankSum=-1.033;DP=100;ExcessHet=0.0000;FS=1.755;MQ=59.94;MQRankSum=-0.895;QD=21.52;ReadPosRankSum=0.304;SOR=0.485;VarDP=97 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:1005,0:0,0,14,9 0/1:34,40:74:99:1082,0,913:21,13,21,19 +chrX 2885648 . T C 975 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=31.25;DP=95;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.70;SOR=1.179;VarDP=23 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,23:23:99:.:1005,0:0,0,14,9 0/0:.:72:99:72:0,115,1800 +chrX 2885954 . AT A 1418.97 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=16.38;BaseQRankSum=0.831;DP=105;ExcessHet=0.0000;FS=1.829;MQ=54.49;MQRankSum=-5.727;QD=16.38;ReadPosRankSum=-0.464;SOR=0.473;VarDP=89 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:792,0:0,0,10,16 0/1:35,28:63:99:666,0,868:12,23,12,16 +chrX 2886144 . G A 602 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=13.74;BaseQRankSum=0.476;DP=84;ExcessHet=0.0000;FS=1.145;MQ=59.29;MQRankSum=-0.989;QD=13.74;ReadPosRankSum=0.044;SOR=0.583;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:35:99:35:0,640 0/1:23,23:46:99:.:632,0,606:13,10,11,12 +chrX 2886383 . CTTTTTT CTTTTTTTTTTT,C 2356.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=36,22;AS_QD=30.75,32.17;DP=79;ExcessHet=0.0000;FS=0.000;MQ=59.37;QD=41.31;SOR=1.382;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:889,0,890:0,0,14,7 1/2:0,15,22:37:99:1507,900,856,612,0,604:0,0,23,14 +chrX 2887483 . AT ATT,A 1092.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=39,19;AS_QD=17.63,16.00;BaseQRankSum=-0.629;DP=85;ExcessHet=0.0000;FS=3.065;MQ=58.58;MQRankSum=-0.46;QD=18.87;ReadPosRankSum=1.268;SOR=0.120;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,16,0:16:99:351,0,351:0,0,7,9 1/2:2,23,19:44:99:781,409,515,445,0,613:0,2,21,21 +chrX 2887745 . T C 1776 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=21.00;BaseQRankSum=0.074;DP=89;ExcessHet=0.0000;FS=2.000;MQ=59.78;MQRankSum=0;QD=21.00;ReadPosRankSum=0.624;SOR=0.430;VarDP=86 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:893,0:0,0,16,12 0/1:24,34:58:99:913,0,600:10,14,15,19 +chrX 2887763 . A AAAG 3602.97 . AC=3;AF=1.00;AN=3;AS_AltDP=85;AS_QD=28.46;DP=104;ExcessHet=0.0000;FS=0.000;MQ=59.82;QD=42.85;SOR=0.716;VarDP=85 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:1169,0:0,0,16,12 1/1:0,57:57:99:2473,171,0:0,0,27,30 +chrX 2887866 . C CAA 1417.97 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=21.75;BaseQRankSum=-1.065;DP=78;ExcessHet=0.0000;FS=7.384;MQ=59.92;MQRankSum=0;QD=21.75;ReadPosRankSum=-0.868;SOR=0.606;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,19:19:99:636,0:0,0,6,13 0/1:20,28:48:99:821,0,575:13,7,15,13 +chrX 2888155 . G A 2395 . AC=3;AF=1.00;AN=3;AS_AltDP=72;AS_QD=33.68;DP=74;ExcessHet=0.0000;FS=0.000;MQ=59.90;QD=33.68;SOR=0.749;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:851,0:0,0,15,11 1/1:0,46:46:99:1574,138,0:0,0,22,24 +chrX 2888233 . A C 1487 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=32.28;DP=76;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.28;SOR=1.022;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,610 1/1:0,47:47:99:.:1517,141,0:0,0,27,20 +chrX 2888548 . A G 2428 . AC=3;AF=1.00;AN=3;AS_AltDP=75;AS_QD=32.77;DP=79;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.77;SOR=1.319;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,20:20:99:645,0:0,0,6,14 1/1:0,55:55:99:1813,165,0:0,0,22,33 +chrX 2890948 . T G 700 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=29.20;DP=78;ExcessHet=0.0000;FS=0.000;MQ=50.91;QD=29.20;SOR=0.770;VarDP=25 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,25:25:99:.:730,0:0,0,13,12 0/0:.:53:59:53:0,59,864 +chrX 2891325 . C G 2472 . AC=3;AF=1.00;AN=3;AS_AltDP=76;AS_QD=32.92;DP=79;ExcessHet=0.0000;FS=0.000;MQ=41.50;QD=32.92;SOR=1.194;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,21:21:99:720,0:0,0,12,9 1/1:0,55:55:99:1782,164,0:0,0,34,21 +chrX 2891808 . A C 1548 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=17.15;BaseQRankSum=0.991;DP=96;ExcessHet=0.0000;FS=12.724;MQ=60.00;MQRankSum=0;QD=17.15;ReadPosRankSum=-0.896;SOR=1.496;VarDP=92 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:975,0:0,0,18,12 0/1:38,24:62:99:603,0,1045:17,21,18,6 +chrX 2891934 . T C 1756 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=24.47;BaseQRankSum=1.611;DP=75;ExcessHet=0.0000;FS=2.413;MQ=60.00;MQRankSum=0;QD=24.47;ReadPosRankSum=1.772;SOR=0.715;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:968,0:0,0,17,13 0/1:16,27:43:99:818,0,387:7,9,14,13 +chrX 2893813 . C T 594 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=33.58;DP=69;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=41.60;SOR=0.818;VarDP=15 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,15:15:99:.:624,0:0,0,7,8 0/0:.:53:49:53:0,49,946 +chrX 2893826 . G GTA 591.97 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=34.31;DP=70;ExcessHet=0.0000;FS=0.000;MQ=58.45;QD=42.07;SOR=1.112;VarDP=15 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,15:15:99:.:631,0:0,0,6,9 0/0:.:53:49:53:0,49,946 +chrX 2893972 . T C,TAC,TATATATATAC,TATATATATATAC 958 . AC=1,0,1,0;AF=0.333,0.00,0.333,0.00;AN=3;AS_AltDP=16,1,2,1;AS_QD=20.27,16.05,10.35,9.59;BaseQRankSum=4.25;DP=65;ExcessHet=0.0000;FS=0.000;MQ=59.04;MQRankSum=0.559;QD=24.10;ReadPosRankSum=1.009;SOR=0.793;VarDP=41 GT:AD:DP:GQ:PL:SB 1:1,16,0,0,0:17:99:750,0,540,650,650:0,1,8,8 0/3:20,0,1,2,1:24:27:238,100,852,95,733,751,0,729,598,715,27,757,627,671,745:10,10,1,3 +chrX 2894400 . T A 1668 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=19.74;BaseQRankSum=0;DP=91;ExcessHet=0.0000;FS=1.850;MQ=59.90;MQRankSum=-0.967;QD=19.74;ReadPosRankSum=1.361;SOR=0.941;VarDP=86 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:863,0:0,0,9,17 0/1:30,30:60:99:835,0,842:14,16,14,16 +chrX 2895246 . T C 1818 . AC=2;AF=0.667;AN=3;AS_AltDP=65;AS_QD=20.31;BaseQRankSum=-0.054;DP=95;ExcessHet=0.0000;FS=4.555;MQ=60.00;MQRankSum=0;QD=20.31;ReadPosRankSum=0.687;SOR=0.314;VarDP=91 GT:AD:DP:GQ:PL:SB 1:0,39:39:99:1165,0:0,0,20,19 0/1:26,26:52:99:683,0,698:9,17,11,15 +chrX 2895634 . CAAAAAAAAAAAAAAAAAAAAAAAA CA,C 874.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=12,13;AS_QD=12.03,11.13;BaseQRankSum=-0.595;DP=79;ExcessHet=0.0000;FS=2.371;MQ=57.34;MQRankSum=1.449;QD=17.58;ReadPosRankSum=0.134;SOR=0.799;VarDP=52 GT:AD:DP:GQ:PL:SB 1:1,12,0:13:99:469,0,488:0,1,8,4 0/2:26,0,13:39:99:445,523,1590,0,1066,1024:12,14,6,7 +chrX 2895719 . A G 2339 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=29.61;BaseQRankSum=-1.62;DP=81;ExcessHet=0.0000;FS=3.328;MQ=59.04;MQRankSum=-1.675;QD=29.61;ReadPosRankSum=1.121;SOR=0.618;VarDP=80 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,30:30:99:.:.:1350,0:.:0,0,16,14 0|1:24,26:50:99:0|1:2895719_A_G:1019,0,918:2895719:10,14,14,12 +chrX 2895724 . T C 2339 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=29.61;BaseQRankSum=-1.33;DP=81;ExcessHet=0.0000;FS=3.328;MQ=58.83;MQRankSum=-1.675;QD=29.61;ReadPosRankSum=0.451;SOR=0.618;VarDP=80 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,30:30:99:.:.:1350,0:.:0,0,16,14 0|1:24,26:50:99:0|1:2895719_A_G:1019,0,918:2895719:10,14,14,12 +chrX 2895729 . T C 2346 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=30.08;BaseQRankSum=-1.578;DP=80;ExcessHet=0.0000;FS=2.063;MQ=58.82;MQRankSum=-1.672;QD=30.08;ReadPosRankSum=0.506;SOR=0.568;VarDP=79 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,31:31:99:.:.:1395,0:.:0,0,16,15 0|1:23,25:48:99:0|1:2895719_A_G:981,0,891:2895719:10,13,13,12 +chrX 2895735 . A G 2338 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=29.97;BaseQRankSum=-1.69;DP=80;ExcessHet=0.0000;FS=3.328;MQ=58.84;MQRankSum=-1.369;QD=29.97;ReadPosRankSum=0.756;SOR=0.660;VarDP=79 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,32:32:99:.:.:1429,0:.:0,0,17,15 0|1:23,24:47:99:0|1:2895719_A_G:939,0,894:2895719:10,13,13,11 +chrX 2895813 . T A 1448 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=18.48;BaseQRankSum=-0.58;DP=86;ExcessHet=0.0000;FS=3.257;MQ=59.17;MQRankSum=-1.594;QD=18.48;ReadPosRankSum=0.433;SOR=1.127;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:727,0:0,0,9,14 0/1:26,31:57:99:751,0,640:12,14,11,20 +chrX 2895877 . A G 1055 . AC=2;AF=0.667;AN=3;AS_AltDP=39;AS_QD=15.28;BaseQRankSum=0.288;DP=75;ExcessHet=0.0000;FS=4.580;MQ=59.52;MQRankSum=-0.954;QD=15.28;ReadPosRankSum=0.536;SOR=1.236;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,19:19:99:580,0:0,0,8,11 0/1:32,20:52:99:505,0,886:16,16,7,13 +chrX 2895923 . A G 1900 . AC=2;AF=0.667;AN=3;AS_AltDP=48;AS_QD=22.71;BaseQRankSum=-0.551;DP=85;ExcessHet=0.0000;FS=2.881;MQ=59.77;MQRankSum=-1.678;QD=22.71;ReadPosRankSum=-1.763;SOR=0.748;VarDP=85 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,22:22:99:.:.:990,0:.:0,0,9,13 0|1:37,26:63:99:0|1:2895923_A_G:940,0,1403:2895923:20,17,13,13 +chrX 2895942 . TG T 2068.97 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=24.51;BaseQRankSum=-1.188;DP=86;ExcessHet=0.0000;FS=1.794;MQ=59.78;MQRankSum=-1.6;QD=24.51;ReadPosRankSum=-0.567;SOR=0.858;VarDP=86 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,24:24:99:.:.:1080,0:.:0,0,10,14 0|1:35,27:62:99:0|1:2895923_A_G:1028,0,1358:2895923:18,17,13,14 +chrX 2895947 . A G 2123 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=25.03;BaseQRankSum=-1.153;DP=86;ExcessHet=0.0000;FS=1.807;MQ=59.78;MQRankSum=-1.548;QD=25.03;ReadPosRankSum=0.052;SOR=0.764;VarDP=86 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,24:24:99:.:.:1080,0:.:0,0,10,14 0|1:34,28:62:99:0|1:2895923_A_G:1073,0,1343:2895923:18,16,14,14 +chrX 2895952 . A G 2129 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=25.40;BaseQRankSum=-1.614;DP=85;ExcessHet=0.0000;FS=1.793;MQ=59.77;MQRankSum=-1.553;QD=25.40;ReadPosRankSum=0.089;SOR=0.805;VarDP=85 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,25:25:99:.:.:1125,0:.:0,0,10,15 0|1:33,27:60:99:0|1:2895923_A_G:1034,0,1304:2895923:17,16,14,13 +chrX 2895954 . C T 2171 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=25.30;BaseQRankSum=-0.297;DP=87;ExcessHet=0.0000;FS=0.830;MQ=59.78;MQRankSum=-1.577;QD=25.30;ReadPosRankSum=0.55;SOR=0.892;VarDP=87 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,26:26:99:.:.:1170,0:.:0,0,10,16 0|1:34,27:61:99:0|1:2895923_A_G:1031,0,1346:2895923:17,17,14,13 +chrX 2895968 . AAAATAAAT A 2247.97 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=26.29;BaseQRankSum=-0.695;DP=91;ExcessHet=0.0000;FS=0.000;MQ=59.88;MQRankSum=-1.075;QD=26.29;ReadPosRankSum=1.249;SOR=0.614;VarDP=87 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,29:29:99:.:.:1305,0:.:0,0,14,15 0|1:32,26:58:99:0|1:2895923_A_G:982,0,1260:2895923:17,15,14,12 +chrX 2896119 . C T 2114 . AC=2;AF=0.667;AN=3;AS_AltDP=72;AS_QD=22.33;BaseQRankSum=-0.763;DP=101;ExcessHet=0.0000;FS=14.270;MQ=60.00;MQRankSum=0;QD=22.33;ReadPosRankSum=0.332;SOR=0.458;VarDP=96 GT:AD:DP:GQ:PL:SB 1:0,38:38:99:1226,0:0,0,21,17 0/1:24,34:58:99:918,0,604:7,17,18,16 +chrX 2896613 . C CA 562.97 . AC=2;AF=0.667;AN=3;AS_AltDP=31;AS_QD=14.00;BaseQRankSum=-0.18;DP=61;ExcessHet=0.0000;FS=7.319;MQ=59.73;MQRankSum=-0.82;QD=14.00;ReadPosRankSum=-1.222;SOR=0.766;VarDP=43 GT:AD:DP:GQ:PL:SB 1:0,16:16:99:354,0:0,0,6,10 0/1:12,15:27:99:248,0,187:8,4,7,8 +chrX 2896798 . A G 519 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=30.50;DP=67;ExcessHet=0.0000;FS=0.000;MQ=59.73;QD=30.50;SOR=0.693;VarDP=18 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,18:18:99:.:549,0:0,0,9,9 0/0:.:49:92:49:0,92,1320 +chrX 2896887 . A G 1694 . AC=2;AF=0.667;AN=3;AS_AltDP=49;AS_QD=20.05;BaseQRankSum=-3.1;DP=88;ExcessHet=0.0000;FS=2.891;MQ=59.89;MQRankSum=0;QD=20.05;ReadPosRankSum=-1.809;SOR=0.796;VarDP=86 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,21:21:99:.:.:660,0:.:0,0,10,11 0|1:37,28:65:99:0|1:2896887_A_G:1064,0,1464:2896887:20,17,12,16 +chrX 2896888 . G C 1034 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=16.37;BaseQRankSum=-1.489;DP=87;ExcessHet=0.0000;FS=3.417;MQ=60.00;MQRankSum=0;QD=16.37;ReadPosRankSum=-1.782;SOR=0.894;VarDP=65 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:20:99:20:.:.:0,476 0|1:37,28:65:99:.:0|1:2896887_A_G:1064,0,1464:2896887:20,17,12,16 +chrX 2896933 . A G 405 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=22.89;BaseQRankSum=-0.989;DP=86;ExcessHet=0.0000;FS=0.000;MQ=59.75;MQRankSum=0;QD=22.89;ReadPosRankSum=0.365;SOR=0.223;VarDP=19 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,18:19:99:.:435,0:1,0,9,9 0/0:.:67:99:67:0,106,1787 +chrX 2897146 . A C 1279 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=16.16;BaseQRankSum=-1.636;DP=83;ExcessHet=0.0000;FS=11.334;MQ=60.00;MQRankSum=0;QD=16.16;ReadPosRankSum=0.111;SOR=0.424;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:754,0:0,0,16,7 0/1:34,24:58:99:555,0,933:11,23,9,15 +chrX 2898041 . T C 1824 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=22.34;BaseQRankSum=0.576;DP=88;ExcessHet=0.0000;FS=10.687;MQ=59.49;MQRankSum=-0.065;QD=22.34;ReadPosRankSum=-0.929;SOR=1.082;VarDP=83 GT:AD:DP:GQ:PL:SB 1:0,39:39:99:1306,0:0,0,16,23 0/1:23,21:44:99:548,0,582:14,9,7,14 +chrX 2899088 . G A 162 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=3.20;BaseQRankSum=-1.103;DP=95;ExcessHet=0.0000;FS=0.000;MQ=59.37;MQRankSum=-2.823;QD=3.20;ReadPosRankSum=-0.277;SOR=0.693;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,630 0/1:48,12:60:99:.:192,0,1410:24,24,6,6 +chrX 2899651 . C CT 655.97 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=28.96;DP=81;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=28.96;SOR=1.270;VarDP=24 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,24:24:99:.:695,0:0,0,15,9 0/0:.:56:72:56:0,72,1405 +chrX 2899769 . A AT 282.97 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=18.94;DP=86;ExcessHet=0.0000;FS=0.000;MQ=59.51;QD=18.94;SOR=0.804;VarDP=17 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,17:17:99:.:322,0:0,0,9,8 0/0:.:56:72:56:0,72,1405 +chrX 2900252 . GTTTTTTTTTTT G 470.97 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=30.00;BaseQRankSum=-0.552;DP=81;ExcessHet=0.0000;FS=0.000;MQ=58.72;MQRankSum=0;QD=30.00;ReadPosRankSum=0.812;SOR=1.609;VarDP=17 GT:AD:DP:GQ:MIN_DP:PL:SB 1:3,14:17:99:.:510,0:1,2,3,11 0/0:.:51:36:50:0,36,540 +chrX 2900399 . G T 750 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=33.91;DP=57;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.91;SOR=1.426;VarDP=23 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,23:23:99:.:780,0:0,0,8,15 0/0:.:33:29:30:0,29,931 +chrX 2900778 . A C 1208 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=33.46;DP=68;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.46;SOR=1.270;VarDP=37 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,37:37:99:.:1238,0:0,0,23,14 0/0:.:33:29:30:0,29,931 +chrX 2900877 . T C 1026 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=32.00;DP=64;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.00;SOR=0.752;VarDP=33 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,33:33:99:.:1056,0:0,0,17,16 0/0:.:33:29:30:0,29,931 +chrX 2901341 . A G 938 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=33.38;DP=62;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.38;SOR=0.760;VarDP=29 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,29:29:99:.:968,0:0,0,15,14 0/0:.:33:29:30:0,29,931 +chrX 2901464 . C T 669 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=31.77;DP=52;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.77;SOR=0.874;VarDP=22 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,22:22:99:.:699,0:0,0,12,10 0/0:.:33:29:30:0,29,931 +chrX 2901496 . T TTCTCGTGATAGTGAATAAGTCTTTTGTGATATGCTGA 1020.97 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=30.92;DP=63;ExcessHet=0.0000;FS=0.000;MQ=58.66;QD=39.26;SOR=1.101;VarDP=27 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,27:27:99:.:1060,0:0,0,11,16 0/0:.:33:29:30:0,29,931 +chrX 2901576 . C T 855 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=34.04;DP=58;ExcessHet=0.0000;FS=0.000;MQ=58.42;QD=34.04;SOR=0.693;VarDP=26 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,26:26:99:.:885,0:0,0,13,13 0/0:.:33:29:30:0,29,931 +chrX 2902144 . A G 769 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=33.29;DP=56;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.29;SOR=1.051;VarDP=24 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,24:24:99:.:799,0:0,0,14,10 0/0:.:33:29:30:0,29,931 +chrX 2902291 . T C 866 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=30.90;DP=61;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.90;SOR=1.688;VarDP=29 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,29:29:99:.:896,0:0,0,9,20 0/0:.:33:29:30:0,29,931 +chrX 2902414 . G C 1032 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=32.18;DP=63;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.18;SOR=1.751;VarDP=33 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,33:33:99:.:1062,0:0,0,23,10 0/0:.:33:29:30:0,29,931 +chrX 2902667 . C T 1092 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=33.00;DP=64;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.00;SOR=1.085;VarDP=34 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,34:34:99:.:1122,0:0,0,20,14 0/0:.:33:29:30:0,29,931 +chrX 2902786 . CAG C 701.97 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=31.07;DP=51;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=37.05;SOR=0.693;VarDP=20 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,20:20:99:.:741,0:0,0,10,10 0/0:.:33:29:30:0,29,931 +chrX 2903163 . T C 1217 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=35.46;DP=59;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.54;SOR=0.997;VarDP=28 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,28:28:99:.:1247,0:0,0,12,16 0/0:.:33:29:30:0,29,931 +chrX 2903178 . C T 1314 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=33.79;DP=61;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.35;SOR=1.044;VarDP=31 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,31:31:99:.:1344,0:0,0,13,18 0/0:.:33:29:30:0,29,931 +chrX 2903311 . C T 625 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=32.75;DP=50;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.75;SOR=1.721;VarDP=20 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,20:20:99:.:655,0:0,0,6,14 0/0:.:33:29:30:0,29,931 +chrX 2903409 . G A 838 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=33.38;DP=56;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.38;SOR=0.846;VarDP=26 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,26:26:99:.:868,0:0,0,14,12 0/0:.:33:29:30:0,29,931 +chrX 2903827 . C T 680 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=28.40;BaseQRankSum=-0.319;DP=55;ExcessHet=0.0000;FS=3.010;MQ=60.00;MQRankSum=0;QD=28.40;ReadPosRankSum=0.15;SOR=0.165;VarDP=25 GT:AD:DP:GQ:MIN_DP:PL:SB 1:2,23:25:99:.:710,0:2,0,13,10 0/0:.:33:29:30:0,29,931 +chrX 2903937 . A C 686 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=12.56;BaseQRankSum=-1.333;DP=86;ExcessHet=0.0000;FS=2.326;MQ=60.00;MQRankSum=0;QD=12.56;ReadPosRankSum=0.761;SOR=0.777;VarDP=57 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:29:99:29:.:.:0,698 0|1:37,20:57:99:.:0|1:2903937_A_C:716,0,1493:2903937:20,17,9,11 +chrX 2903938 . G T 686 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=12.56;BaseQRankSum=-0.176;DP=87;ExcessHet=0.0000;FS=2.326;MQ=60.00;MQRankSum=0;QD=12.56;ReadPosRankSum=1.264;SOR=0.777;VarDP=57 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:29:99:29:.:.:0,698 0|1:37,20:57:99:.:0|1:2903937_A_C:716,0,1493:2903937:20,17,9,11 +chrX 2904212 . C T 1002 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=33.29;DP=76;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.29;SOR=1.402;VarDP=31 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,31:31:99:.:1032,0:0,0,20,11 0/0:.:48:29:44:0,29,972 +chrX 2904560 . G T 813 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=33.72;DP=71;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.72;SOR=1.358;VarDP=25 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,25:25:99:.:843,0:0,0,9,16 0/0:.:48:29:44:0,29,972 +chrX 2904903 . CT C 327.97 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=21.59;DP=65;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=21.59;SOR=1.061;VarDP=17 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,17:17:99:.:367,0:0,0,7,10 0/0:.:48:29:44:0,29,972 +chrX 2905544 . C T 738 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=32.00;DP=68;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.00;SOR=0.859;VarDP=24 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,24:24:99:.:768,0:0,0,13,11 0/0:.:48:29:44:0,29,972 +chrX 2905617 . T A 872 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=30.07;DP=78;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.07;SOR=0.826;VarDP=30 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,30:30:99:.:902,0:0,0,14,16 0/0:.:48:29:44:0,29,972 +chrX 2905642 . T G 828 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=31.78;DP=73;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.78;SOR=0.922;VarDP=27 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,27:27:99:.:858,0:0,0,12,15 0/0:.:48:29:44:0,29,972 +chrX 2906136 . AT A 309.97 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=21.81;DP=66;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=21.81;SOR=0.693;VarDP=16 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,16:16:99:.:349,0:0,0,8,8 0/0:.:48:29:44:0,29,972 +chrX 2906169 . A G 550 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=32.22;DP=62;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.22;SOR=0.914;VarDP=18 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,18:18:99:.:580,0:0,0,8,10 0/0:.:48:29:44:0,29,972 +chrX 2907001 . T C 715 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=32.39;BaseQRankSum=3.545;DP=69;ExcessHet=0.0000;FS=3.617;MQ=60.00;MQRankSum=0;QD=32.39;ReadPosRankSum=0.981;SOR=0.793;VarDP=23 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,22:23:99:.:745,0:0,1,13,9 0/0:.:48:29:44:0,29,972 +chrX 2907093 . A G 912 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=32.48;DP=74;ExcessHet=0.0000;FS=0.000;MQ=59.44;QD=32.48;SOR=0.760;VarDP=29 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,29:29:99:.:942,0:0,0,14,15 0/0:.:48:29:44:0,29,972 +chrX 2907116 . C CAAAA 971.97 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=34.00;DP=69;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=42.13;SOR=0.693;VarDP=24 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,24:24:99:.:1011,0:0,0,12,12 0/0:.:48:29:44:0,29,972 +chrX 2907362 . A G 1012 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=32.56;DP=77;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.56;SOR=0.818;VarDP=32 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,32:32:99:.:1042,0:0,0,17,15 0/0:.:48:29:44:0,29,972 +chrX 2907713 . T A 1632 . AC=1;AF=0.333;AN=3;AS_AltDP=39;AS_QD=21.89;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=42.62;SOR=1.387;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,39:39:99:.:1662,0:0,0,25,14 0/0:.:48:29:44:0,29,972 +chrX 2907737 . G A 1682 . AC=1;AF=0.333;AN=3;AS_AltDP=42;AS_QD=34.80;DP=86;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=40.76;SOR=1.127;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,42:42:99:.:1712,0:0,0,25,17 0/0:.:48:29:44:0,29,972 +chrX 2907886 . G A 1304 . AC=1;AF=0.333;AN=3;AS_AltDP=41;AS_QD=32.54;DP=86;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.54;SOR=1.206;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,41:41:99:.:1334,0:0,0,16,25 0/0:.:48:29:44:0,29,972 +chrX 2908129 . G A 802 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=32.00;DP=70;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.00;SOR=1.022;VarDP=26 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,26:26:99:.:832,0:0,0,15,11 0/0:.:48:29:44:0,29,972 +chrX 2908198 . T C 818 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=33.92;DP=69;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.92;SOR=0.770;VarDP=25 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,25:25:99:.:848,0:0,0,13,12 0/0:.:48:29:44:0,29,972 +chrX 2908535 . C CT 351.97 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=30.08;DP=61;ExcessHet=0.0000;FS=0.000;MQ=58.55;QD=30.08;SOR=1.445;VarDP=13 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,13:13:99:.:391,0:0,0,4,8 0/0:.:48:29:44:0,29,972 +chrX 2908667 . C T 882 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=33.78;DP=70;ExcessHet=0.0000;FS=0.000;MQ=59.40;QD=33.78;SOR=1.101;VarDP=27 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,27:27:99:.:912,0:0,0,16,11 0/0:.:46:37:42:0,37,688 +chrX 2909080 . G GCACACACACA 1173.97 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=28.30;DP=78;ExcessHet=0.0000;FS=0.000;MQ=59.22;QD=44.93;SOR=1.781;VarDP=27 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,27:27:99:.:1213,0:0,0,19,8 0/0:.:46:37:42:0,37,688 +chrX 2909360 . G A 1146 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=33.60;DP=79;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.60;SOR=1.885;VarDP=35 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,35:35:99:.:1176,0:0,0,10,25 0/0:.:46:37:42:0,37,688 +chrX 2909639 . A G 540 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=30.00;DP=61;ExcessHet=0.0000;FS=0.000;MQ=58.60;QD=30.00;SOR=0.793;VarDP=19 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,19:19:99:.:570,0:0,0,9,10 0/0:.:46:37:42:0,37,688 +chrX 2909753 . T TA 207.97 . AC=1;AF=0.333;AN=3;AS_AltDP=9;AS_QD=27.44;DP=39;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=27.44;SOR=0.892;VarDP=9 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,9:9:99:.:247,0:0,0,4,5 0/0:.:40:23:29:0,23,800 +chrX 2910081 . C T 704 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=13.11;BaseQRankSum=0.967;DP=90;ExcessHet=0.0000;FS=9.587;MQ=60.00;MQRankSum=0;QD=13.11;ReadPosRankSum=-1.011;SOR=1.655;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,303 0/1:30,26:56:99:.:734,0,874:14,16,18,8 +chrX 2910316 . T TTAA 1469.97 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=30.49;DP=102;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.38;SOR=0.811;VarDP=34 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,34:34:99:.:1509,0:0,0,18,16 0/0:.:66:97:66:0,97,1558 +chrX 2910957 . C T 638 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=12.85;BaseQRankSum=0.628;DP=90;ExcessHet=0.0000;FS=5.738;MQ=60.00;MQRankSum=0;QD=12.85;ReadPosRankSum=-0.293;SOR=0.961;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:35:99:35:0,720 0/1:27,25:52:99:.:668,0,717:16,11,10,15 +chrX 2911580 . G A 630 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=33.00;DP=62;ExcessHet=0.0000;FS=0.000;MQ=57.80;QD=33.00;SOR=1.402;VarDP=20 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,20:20:99:.:660,0:0,0,7,13 0/0:.:46:36:40:0,36,1111 +chrX 2911669 . CA C 186.97 . AC=1;AF=0.333;AN=3;AS_AltDP=10;AS_QD=20.55;DP=67;ExcessHet=0.0000;FS=3.424;MQ=54.04;MQRankSum=1.615;QD=20.55;SOR=0.793;VarDP=11 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,10:11:99:.:226,0:0,1,6,4 0/0:.:44:0:44:0,0,943 +chrX 2911686 . GA G 247.97 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=23.92;BaseQRankSum=0;DP=78;ExcessHet=0.0000;FS=4.771;MQ=53.09;MQRankSum=2.227;QD=23.92;ReadPosRankSum=0.872;SOR=1.670;VarDP=12 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,11:12:99:.:287,0:0,1,8,3 0/0:.:58:64:58:0,64,1254 +chrX 2911735 . T A 580 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=28.52;DP=75;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=35.88;SOR=2.712;VarDP=17 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,17:17:99:.:610,0:0,0,14,3 0/0:.:58:64:58:0,64,1254 +chrX 2911962 . C G 1126 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=32.11;DP=96;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.11;SOR=0.927;VarDP=36 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,36:36:99:.:1156,0:0,0,20,16 0/0:.:58:64:58:0,64,1254 +chrX 2912250 . T C 960 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=33.00;DP=88;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.00;SOR=1.143;VarDP=30 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,30:30:99:.:990,0:0,0,12,18 0/0:.:58:64:58:0,64,1254 +chrX 2912593 . C G 862 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=30.76;DP=89;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.76;SOR=1.255;VarDP=29 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,29:29:99:.:892,0:0,0,11,18 0/0:.:58:64:58:0,64,1254 +chrX 2913960 . A G 381 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=8.56;BaseQRankSum=-3.234;DP=80;ExcessHet=0.0000;FS=6.285;MQ=60.00;MQRankSum=0;QD=8.56;ReadPosRankSum=-1.709;SOR=1.656;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,411 0/1:29,19:48:99:.:411,0,844:16,13,14,5 +chrX 2914235 . C CT 683.97 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=26.78;DP=84;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=26.78;SOR=0.765;VarDP=27 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,27:27:99:.:723,0:0,0,13,14 0/0:.:55:46:55:0,46,1121 +chrX 2914418 . TGGG T,TGG 1377.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=24,16;AS_QD=27.41,11.23;BaseQRankSum=0.554;DP=68;ExcessHet=0.0000;FS=0.000;MQ=59.82;MQRankSum=0;QD=25.76;ReadPosRankSum=-0.044;SOR=0.627;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:1069,0,1069:0,0,10,14 0/2:15,0,16:31:99:348,393,747,0,354,306:6,9,7,9 +chrX 2914698 . C T 1309 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=30.26;DP=86;ExcessHet=0.0000;FS=0.000;MQ=59.47;QD=44.63;SOR=0.976;VarDP=30 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,30:30:99:.:1339,0:0,0,17,13 0/0:.:54:88:54:0,88,1229 +chrX 2914701 . G C 2230 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=25.98;BaseQRankSum=2.48;DP=89;ExcessHet=0.0000;FS=0.895;MQ=59.81;MQRankSum=0;QD=25.98;ReadPosRankSum=-0.558;SOR=0.825;VarDP=87 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:1339,0:0,0,17,13 0/1:24,33:57:99:921,0,548:13,11,19,14 +chrX 2915099 . C G 1036 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=31.35;DP=97;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.35;SOR=1.085;VarDP=34 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,34:34:99:.:1066,0:0,0,14,20 0/0:.:63:99:63:0,102,1747 +chrX 2915257 . C T 1506 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=29.88;DP=99;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=42.67;SOR=1.061;VarDP=36 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,36:36:99:.:1536,0:0,0,21,15 0/0:.:63:99:63:0,102,1747 +chrX 2915279 . C G 1457 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=29.39;DP=97;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.74;SOR=0.811;VarDP=34 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,34:34:99:.:1487,0:0,0,18,16 0/0:.:63:99:63:0,102,1747 +chrX 2915311 . C T 1052 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=33.81;DP=95;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.81;SOR=0.693;VarDP=32 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,32:32:99:.:1082,0:0,0,16,16 0/0:.:63:99:63:0,102,1747 +chrX 2915465 . G C 2016 . AC=2;AF=0.667;AN=3;AS_AltDP=71;AS_QD=21.31;BaseQRankSum=2.065;DP=99;ExcessHet=0.0000;FS=16.553;MQ=59.93;MQRankSum=0;QD=21.31;ReadPosRankSum=1.687;SOR=0.835;VarDP=96 GT:AD:DP:GQ:PL:SB 1:1,36:37:99:1151,0:1,0,17,19 0/1:24,35:59:99:895,0,623:16,8,12,23 +chrX 2915815 . T C 1849 . AC=2;AF=0.667;AN=3;AS_AltDP=64;AS_QD=19.17;BaseQRankSum=-0.082;DP=100;ExcessHet=0.0000;FS=0.799;MQ=60.00;MQRankSum=0;QD=19.17;ReadPosRankSum=-1.837;SOR=0.544;VarDP=98 GT:AD:DP:GQ:PL:SB 1:0,37:37:99:1186,0:0,0,14,23 0/1:34,27:61:99:693,0,914:19,15,19,8 +chrX 2916032 . C T 1131 . AC=2;AF=0.667;AN=3;AS_AltDP=39;AS_QD=19.35;BaseQRankSum=-2.414;DP=63;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=19.35;ReadPosRankSum=-1.138;SOR=0.656;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,15:15:99:522,0:0,0,8,7 0/1:21,24:45:99:639,0,595:10,11,11,13 +chrX 2916131 . C CA,CAAA 757.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=12,21;AS_QD=9.00,17.61;BaseQRankSum=-0.036;DP=75;ExcessHet=0.0000;FS=3.046;MQ=59.51;MQRankSum=0;QD=17.71;ReadPosRankSum=0.412;SOR=1.302;VarDP=45 GT:AD:DP:GQ:PL:SB 1:1,12,0:13:99:216,0,236:1,0,3,9 0/2:11,0,21:32:99:581,615,986,0,371,309:4,7,7,14 +chrX 2916414 . C T 953 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=32.77;DP=84;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.77;SOR=1.143;VarDP=30 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,30:30:99:.:983,0:0,0,18,12 0/0:.:58:30:53:0,30,1412 +chrX 2916489 . G C 1714 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=18.75;BaseQRankSum=0.28;DP=96;ExcessHet=0.0000;FS=1.800;MQ=60.00;MQRankSum=0;QD=18.75;ReadPosRankSum=0.514;SOR=0.851;VarDP=93 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:865,0:0,0,14,13 0/1:31,35:66:99:879,0,775:16,15,14,21 +chrX 2916682 . C T 773 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=30.88;DP=91;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.88;SOR=0.846;VarDP=26 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,26:26:99:.:803,0:0,0,12,14 0/0:.:64:99:64:0,102,1265 +chrX 2916799 . C T 1644 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=22.32;BaseQRankSum=-1.235;DP=77;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=22.32;ReadPosRankSum=0.253;SOR=0.683;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,36:36:99:1136,0:0,0,17,19 0/1:19,20:39:99:538,0,518:8,11,7,13 +chrX 2917066 . CA C,* 292.97 . AC=2,0;AF=0.667,0.00;AN=3;AS_AltDP=19,2;AS_QD=11.86,0.00;BaseQRankSum=0.917;DP=56;ExcessHet=0.0000;FS=0.000;MQ=59.87;MQRankSum=0;QD=11.07;ReadPosRankSum=-1.022;SOR=0.756;VarDP=30 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,14,0:15:99:.:.:269,0,289:.:0,1,12,2 0|1:8,5,2:15:63:1|0:2917065_TC_T:63,0,145,72,137,616:2917065:7,1,4,3 +chrX 2917996 . G C 652 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=9.47;BaseQRankSum=-0.759;DP=108;ExcessHet=0.0000;FS=6.457;MQ=60.00;MQRankSum=0;QD=9.47;ReadPosRankSum=-1.111;SOR=1.239;VarDP=72 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,600 0/1:45,27:72:99:.:682,0,1308:24,21,10,17 +chrX 2918695 . A G 4088 . AC=3;AF=1.00;AN=3;AS_AltDP=92;AS_QD=29.43;DP=92;ExcessHet=0.0000;FS=0.000;MQ=57.92;QD=44.76;SOR=1.280;VarDP=92 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,31:31:99:.:.:1384,0:.:0,0,13,18 1|1:0,61:61:99:0|1:2918695_A_G:2734,184,0:2918695:0,0,22,39 +chrX 2918696 . T C 4088 . AC=3;AF=1.00;AN=3;AS_AltDP=92;AS_QD=28.04;DP=93;ExcessHet=0.0000;FS=0.000;MQ=57.94;QD=44.76;SOR=1.280;VarDP=92 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,31:31:99:.:.:1384,0:.:0,0,13,18 1|1:0,61:61:99:0|1:2918695_A_G:2734,184,0:2918695:0,0,22,39 +chrX 2918746 . C T 2615 . AC=3;AF=1.00;AN=3;AS_AltDP=82;AS_QD=31.87;BaseQRankSum=2.11;DP=87;ExcessHet=0.0000;FS=0.000;MQ=58.28;MQRankSum=-0.397;QD=31.87;ReadPosRankSum=-0.284;SOR=0.312;VarDP=83 GT:AD:DP:GQ:PL:SB 1:0,22:22:99:745,0:0,0,12,10 1/1:1,60:61:99:1900,173,0:0,1,25,35 +chrX 2919218 . G GTCC 1466.97 . AC=3;AF=1.00;AN=3;AS_AltDP=34;AS_QD=33.39;DP=39;ExcessHet=0.0000;FS=0.000;MQ=38.06;QD=44.29;SOR=0.693;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,12:12:99:540,0:0,0,5,7 1/1:0,22:22:66:966,66,0:0,0,12,10 +chrX 2919250 . A G 1299 . AC=3;AF=1.00;AN=3;AS_AltDP=41;AS_QD=32.41;DP=41;ExcessHet=0.0000;FS=0.000;MQ=42.86;QD=32.41;SOR=0.843;VarDP=41 GT:AD:DP:GQ:PL:SB 1:0,18:18:99:571,0:0,0,10,8 1/1:0,23:23:69:758,69,0:0,0,12,11 +chrX 2919317 . G A 607 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=14.16;BaseQRankSum=1.054;DP=64;ExcessHet=0.0000;FS=4.246;MQ=53.37;MQRankSum=0.16;QD=14.16;ReadPosRankSum=-1.804;SOR=0.897;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:19:99:19:0,357 0/1:21,24:45:99:.:637,0,533:9,12,14,10 +chrX 2919396 . G A 864 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=16.25;BaseQRankSum=-0.739;DP=74;ExcessHet=0.0000;FS=25.828;MQ=51.66;MQRankSum=1.32;QD=16.25;ReadPosRankSum=2.467;SOR=1.509;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:19:99:19:0,357 0/1:23,32:55:99:.:894,0,594:6,17,22,10 +chrX 2919415 . A C 2910 . AC=3;AF=1.00;AN=3;AS_AltDP=79;AS_QD=27.86;DP=80;ExcessHet=0.0000;FS=0.000;MQ=51.16;QD=37.22;SOR=0.941;VarDP=79 GT:AD:DP:GQ:PL:SB 1:0,16:16:99:536,0:0,0,11,5 1/1:0,63:63:99:2404,189,0:0,0,33,30 +chrX 2919700 . T C 3210 . AC=3;AF=1.00;AN=3;AS_AltDP=99;AS_QD=32.73;DP=101;ExcessHet=0.0000;FS=0.000;MQ=59.93;QD=32.73;SOR=0.936;VarDP=99 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:789,0:0,0,17,7 1/1:0,75:75:99:2451,225,0:0,0,38,37 +chrX 2919812 . TGTTGTTGAAA T 3865.97 . AC=3;AF=1.00;AN=3;AS_AltDP=87;AS_QD=31.14;DP=89;ExcessHet=0.0000;FS=0.000;MQ=59.92;QD=44.89;SOR=0.716;VarDP=87 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,20:20:99:.:.:900,0:.:0,0,11,9 1|1:0,67:67:99:0|1:2919812_TGTTGTTGAAA_T:3005,202,0:2919812:0,0,33,34 +chrX 2919824 . TC T 3865.97 . AC=3;AF=1.00;AN=3;AS_AltDP=87;AS_QD=28.53;DP=87;ExcessHet=0.0000;FS=0.000;MQ=59.91;QD=44.89;SOR=0.716;VarDP=87 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,20:20:99:.:.:900,0:.:0,0,11,9 1|1:0,67:67:99:0|1:2919812_TGTTGTTGAAA_T:3005,202,0:2919812:0,0,33,34 +chrX 2920983 . T C 2336 . AC=2;AF=0.667;AN=3;AS_AltDP=80;AS_QD=19.88;BaseQRankSum=0.497;DP=122;ExcessHet=0.0000;FS=6.054;MQ=60.00;MQRankSum=0;QD=19.88;ReadPosRankSum=-0.041;SOR=0.343;VarDP=119 GT:AD:DP:GQ:PL:SB 1:0,36:36:99:1151,0:0,0,22,14 0/1:39,44:83:99:1215,0,1046:15,24,18,26 +chrX 2922782 . A G 2124 . AC=3;AF=1.00;AN=3;AS_AltDP=65;AS_QD=32.64;BaseQRankSum=2.766;DP=68;ExcessHet=0.0000;FS=0.000;MQ=59.74;MQRankSum=0;QD=32.64;ReadPosRankSum=0.533;SOR=0.271;VarDP=66 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:893,0:0,0,14,13 1/1:1,38:39:99:1261,107,0:1,0,18,20 +chrX 2922842 . CAAAAAAAAAAAAAAAAAAAAA C,CAAAAAAAAAAAAAAAAAA 1651.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=40,5;AS_QD=31.03,16.33;DP=78;ExcessHet=0.0000;FS=9.494;MQ=58.83;MQRankSum=2.996;QD=34.51;SOR=0.121;VarDP=49 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:1017,0,1017:0,0,7,16 1/2:4,17,5:26:49:674,49,664,527,0,624:0,4,16,6 +chrX 2922973 . CGTGAGGCACGGTACT C 2856.97 . AC=2;AF=0.667;AN=3;AS_AltDP=68;AS_QD=32.18;BaseQRankSum=-1.048;DP=96;ExcessHet=0.0000;FS=3.346;MQ=60.00;MQRankSum=0;QD=32.18;ReadPosRankSum=0.505;SOR=0.373;VarDP=90 GT:AD:DP:GQ:PL:SB 1:0,35:35:99:1576,0:0,0,19,16 0/1:22,33:55:99:1320,0,824:14,8,17,16 +chrX 2923884 . C T 522 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=8.63;BaseQRankSum=-0.969;DP=100;ExcessHet=0.0000;FS=0.000;MQ=55.12;MQRankSum=-0.607;QD=8.63;ReadPosRankSum=0.576;SOR=0.754;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:35:99:35:0,581 0/1:40,24:64:99:.:552,0,1119:19,21,11,13 +chrX 2923903 . T C 466 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=8.13;BaseQRankSum=-1.423;DP=97;ExcessHet=0.0000;FS=0.000;MQ=54.88;MQRankSum=-0.903;QD=8.13;ReadPosRankSum=1.288;SOR=0.802;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:35:99:35:0,581 0/1:38,23:61:99:.:496,0,1048:16,22,9,14 +chrX 2924812 . G A 978 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=16.52;BaseQRankSum=0.341;DP=97;ExcessHet=0.0000;FS=3.610;MQ=57.09;MQRankSum=-3.938;QD=16.52;ReadPosRankSum=-0.374;SOR=0.535;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:35:99:35:0,581 0/1:25,36:61:99:.:1008,0,636:10,15,19,17 +chrX 2925098 . T C 1577 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=16.92;BaseQRankSum=0.337;DP=99;ExcessHet=0.0000;FS=3.934;MQ=59.85;MQRankSum=0;QD=16.92;ReadPosRankSum=1.132;SOR=1.132;VarDP=95 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:963,0:0,0,12,18 0/1:39,26:65:99:644,0,1056:19,20,10,16 +chrX 2925211 . A G 469 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=11.88;BaseQRankSum=-1.924;DP=78;ExcessHet=0.0000;FS=2.587;MQ=59.28;MQRankSum=-1.052;QD=11.88;ReadPosRankSum=1.783;SOR=0.967;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:33:99:33:0,626 0/1:23,19:42:99:.:499,0,673:11,12,11,8 +chrX 2927240 . C CT 1189.97 . AC=2;AF=0.667;AN=3;AS_AltDP=49;AS_QD=17.07;BaseQRankSum=-0.37;DP=85;ExcessHet=0.0000;FS=0.000;MQ=59.80;MQRankSum=0;QD=17.07;ReadPosRankSum=-0.729;SOR=0.659;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:768,0:0,0,12,16 0/1:23,21:44:99:461,0,517:12,11,12,9 +chrX 2928624 . G C 996 . AC=2;AF=0.667;AN=3;AS_AltDP=34;AS_QD=20.52;BaseQRankSum=2.406;DP=54;ExcessHet=0.0000;FS=1.275;MQ=60.00;MQRankSum=0;QD=20.52;ReadPosRankSum=1.001;SOR=0.465;VarDP=50 GT:AD:DP:GQ:PL:SB 1:1,22:23:99:700,0:1,0,15,7 0/1:15,12:27:99:326,0,440:11,4,8,4 +chrX 2928661 . A G 477 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=19.50;BaseQRankSum=0.881;DP=67;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=19.50;ReadPosRankSum=0.515;SOR=0.874;VarDP=26 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:37:99:37:.:.:0,400 0|1:12,14:26:99:.:0|1:2928661_A_G:507,0,399:2928661:10,2,12,2 +chrX 2928672 . TG T 434.97 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=18.96;BaseQRankSum=-0.53;DP=69;ExcessHet=0.0000;FS=3.188;MQ=60.00;MQRankSum=0;QD=18.96;ReadPosRankSum=0.844;SOR=1.863;VarDP=25 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:37:99:37:.:.:0,400 0|1:12,13:25:99:.:0|1:2928661_A_G:474,0,400:2928661:11,1,13,0 +chrX 2928976 . T C 1736 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=23.24;BaseQRankSum=-1.017;DP=77;ExcessHet=0.0000;FS=9.691;MQ=60.00;MQRankSum=0;QD=23.24;ReadPosRankSum=0.333;SOR=0.693;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:1115,0:0,0,14,19 0/1:18,25:43:99:651,0,463:12,6,11,14 +chrX 2929092 . A G 816 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=14.59;BaseQRankSum=-2.209;DP=91;ExcessHet=0.0000;FS=3.625;MQ=60.00;MQRankSum=0;QD=14.59;ReadPosRankSum=-0.798;SOR=0.350;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,387 0/1:26,32:58:99:.:846,0,728:16,10,16,16 +chrX 2929116 . C G 703 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=12.64;BaseQRankSum=-2.174;DP=91;ExcessHet=0.0000;FS=2.277;MQ=60.00;MQRankSum=0;QD=12.64;ReadPosRankSum=1.012;SOR=0.369;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,387 0/1:29,29:58:99:.:733,0,804:19,10,16,13 +chrX 2930368 . T C 1322 . AC=2;AF=0.667;AN=3;AS_AltDP=43;AS_QD=31.44;DP=75;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.44;SOR=0.836;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,387 1/1:0,43:43:99:.:1352,127,0:0,0,20,23 +chrX 2930467 . T C 1712 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=32.26;DP=86;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.26;SOR=0.767;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,387 1/1:0,54:54:99:.:1742,162,0:0,0,26,28 +chrX 2930794 . C G 1767 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=32.09;BaseQRankSum=-0.388;DP=89;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=32.09;ReadPosRankSum=-1.455;SOR=0.304;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,387 1/1:1,55:56:99:.:1797,133,0:1,0,30,25 +chrX 2931596 . T C 2303 . AC=2;AF=0.667;AN=3;AS_AltDP=73;AS_QD=31.96;DP=104;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.96;SOR=0.898;VarDP=73 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,387 1/1:0,73:73:99:.:2333,219,0:0,0,33,40 +chrX 2931718 . T TA 1503.97 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=30.25;DP=92;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.25;SOR=0.732;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,387 1/1:0,51:51:99:.:1543,153,0:0,0,26,25 +chrX 2931940 . C T 1306 . AC=2;AF=0.667;AN=3;AS_AltDP=39;AS_QD=34.26;DP=77;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=34.26;SOR=1.236;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,387 1/1:0,39:39:99:.:1336,117,0:0,0,15,24 +chrX 2932265 . G C 2158 . AC=2;AF=0.667;AN=3;AS_AltDP=67;AS_QD=32.18;BaseQRankSum=2.616;DP=99;ExcessHet=0.0000;FS=3.554;MQ=60.00;MQRankSum=0;QD=32.18;ReadPosRankSum=-1.478;SOR=0.663;VarDP=68 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,387 1/1:1,67:68:99:.:2188,194,0:0,1,38,29 +chrX 2932392 . T TTTGC 2839.97 . AC=2;AF=0.667;AN=3;AS_AltDP=66;AS_QD=31.41;DP=102;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.62;SOR=0.818;VarDP=66 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:31:99:31:.:.:0,387 1|1:0,66:66:99:.:0|1:2932392_T_TTTGC:2879,197,0:2932392:0,0,31,35 +chrX 2932402 . T TCTTTTTCCTTCCTG 3208.97 . AC=2;AF=0.667;AN=3;AS_AltDP=77;AS_QD=27.62;DP=109;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=42.18;SOR=0.887;VarDP=77 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:31:99:31:.:.:0,387 1|1:0,77:77:99:.:0|1:2932392_T_TTTGC:3248,231,0:2932392:0,0,35,42 +chrX 2932488 . G A 2247 . AC=2;AF=0.667;AN=3;AS_AltDP=68;AS_QD=33.49;DP=99;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.49;SOR=0.752;VarDP=68 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,387 1/1:0,68:68:99:.:2277,204,0:0,0,33,35 +chrX 2932760 . G C 1919 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=32.48;DP=91;ExcessHet=0.0000;FS=0.000;MQ=59.87;QD=32.48;SOR=1.255;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,387 1/1:0,60:60:99:.:1949,179,0:0,0,23,37 +chrX 2932860 . A G 1746 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=31.71;DP=88;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.71;SOR=0.765;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,387 1/1:0,56:56:99:.:1776,167,0:0,0,27,29 +chrX 2934215 . C CT 188.97 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=9.91;BaseQRankSum=-0.871;DP=80;ExcessHet=0.0000;FS=0.000;MQ=59.24;MQRankSum=-0.495;QD=9.91;ReadPosRankSum=-0.175;SOR=0.804;VarDP=23 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,387 0/1:6,17:23:52:.:228,0,52:3,3,8,9 +chrX 2934910 . G A 2116 . AC=2;AF=0.667;AN=3;AS_AltDP=70;AS_QD=30.66;DP=103;ExcessHet=0.0000;FS=0.000;MQ=58.18;QD=30.66;SOR=1.163;VarDP=70 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,387 1/1:0,70:70:99:.:2146,208,0:0,0,42,28 +chrX 2935105 . C T 832 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=15.67;BaseQRankSum=2.101;DP=87;ExcessHet=0.0000;FS=2.307;MQ=59.91;MQRankSum=0.235;QD=15.67;ReadPosRankSum=0.79;SOR=0.511;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,387 0/1:24,31:55:99:.:862,0,569:10,14,16,15 +chrX 2935686 . TC T 1337.97 . AC=2;AF=0.667;AN=3;AS_AltDP=34;AS_QD=26.31;DP=72;ExcessHet=0.0000;FS=0.000;MQ=58.77;QD=40.50;SOR=0.941;VarDP=34 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:31:99:31:.:.:0,387 1|1:0,34:34:99:.:0|1:2935686_TC_T:1377,102,0:2935686:0,0,15,19 +chrX 2935688 . TTTTC T 1337.97 . AC=2;AF=0.667;AN=3;AS_AltDP=34;AS_QD=28.51;DP=73;ExcessHet=0.0000;FS=0.000;MQ=58.80;QD=40.50;SOR=0.941;VarDP=34 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:31:99:31:.:.:0,387 1|1:0,34:34:99:.:0|1:2935686_TC_T:1377,102,0:2935686:0,0,15,19 +chrX 2938114 . C T 2011 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=34.59;DP=94;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=34.59;SOR=1.123;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,387 1/1:0,59:59:99:.:2041,177,0:0,0,35,24 +chrX 2938380 . T TTC 1326.97 . AC=2;AF=0.667;AN=3;AS_AltDP=39;AS_QD=31.02;DP=80;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=35.03;SOR=0.743;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,387 1/1:0,39:39:99:.:1366,117,0:0,0,20,19 +chrX 2939772 . C A 1802 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=33.31;DP=86;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.31;SOR=0.729;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,387 1/1:0,55:55:99:.:1832,165,0:0,0,28,27 +chrX 2939864 . CTT C 401.97 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=18.38;BaseQRankSum=-0.509;DP=89;ExcessHet=0.0000;FS=21.813;MQ=58.34;MQRankSum=0.358;QD=18.38;ReadPosRankSum=0.077;SOR=2.451;VarDP=24 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:31:99:31:.:.:0,387 0|1:4,20:24:18:.:0|1:2939864_CTT_C:441,0,18:2939864:4,0,4,16 +chrX 2941247 . CTTTTTTTTTT C 1343.97 . AC=2;AF=0.667;AN=3;AS_AltDP=34;AS_QD=25.88;BaseQRankSum=-0.361;DP=78;ExcessHet=0.0000;FS=3.122;MQ=59.48;MQRankSum=4.244;QD=38.42;ReadPosRankSum=0.864;SOR=0.105;VarDP=36 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,387 1/1:2,34:36:41:.:1383,41,0:2,0,17,17 +chrX 2942401 . T C 2516 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=33.68;DP=91;ExcessHet=0.0000;FS=0.000;MQ=59.62;QD=43.15;SOR=1.316;VarDP=59 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:31:99:31:.:.:0,387 1|1:0,59:59:99:.:0|1:2942401_T_C:2546,178,0:2942401:0,0,37,22 +chrX 2942416 . T C 2422 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=26.09;DP=90;ExcessHet=0.0000;FS=0.000;MQ=59.61;QD=43.02;SOR=1.238;VarDP=57 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:31:99:31:.:.:0,387 1|1:0,57:57:99:.:0|1:2942401_T_C:2452,171,0:2942401:0,0,35,22 +chrX 2943418 . G C 2549 . AC=3;AF=1.00;AN=3;AS_AltDP=79;AS_QD=32.65;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.65;SOR=0.941;VarDP=79 GT:AD:DP:GQ:PL:SB 1:0,40:40:99:1280,0:0,0,23,17 1/1:0,39:39:99:1299,117,0:0,0,21,18 +chrX 2943741 . C CA 85.97 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=8.33;BaseQRankSum=-0.319;DP=61;ExcessHet=0.0000;FS=6.990;MQ=57.42;MQRankSum=0.728;QD=8.33;ReadPosRankSum=0.797;SOR=0.610;VarDP=15 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:99:28:0,225 0/1:3,12:15:13:.:125,0,13:3,0,5,7 +chrX 2944473 . CAA C 1753.97 . AC=2;AF=0.667;AN=3;AS_AltDP=48;AS_QD=29.26;DP=81;ExcessHet=0.0000;FS=0.000;MQ=59.81;QD=37.35;SOR=1.067;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:99:28:0,225 1/1:0,48:48:99:.:1793,145,0:0,0,20,28 +chrX 2944680 . T C 1345 . AC=2;AF=0.667;AN=3;AS_AltDP=41;AS_QD=33.54;DP=70;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.54;SOR=1.075;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:99:28:0,225 1/1:0,41:41:99:.:1375,123,0:0,0,24,17 +chrX 2945222 . G A 813 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=27.19;BaseQRankSum=1.746;DP=88;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=27.19;ReadPosRankSum=0.483;SOR=0.760;VarDP=31 GT:AD:DP:GQ:MIN_DP:PL:SB 1:2,29:31:99:.:843,0:1,1,14,15 0/0:.:57:62:57:0,62,1170 +chrX 2946322 . CTTTTTTTTT CTTTTTTTTTT,C 798.97 . AC=1,2;AF=0.333,0.667;AN=3;AS_AltDP=8,23;AS_QD=6.29,25.86;BaseQRankSum=1.097;DP=62;ExcessHet=0.0000;FS=0.000;MQ=59.64;MQRankSum=-0.241;QD=22.65;ReadPosRankSum=0.099;SOR=0.892;VarDP=37 GT:AD:DP:GQ:PL:SB 1:3,8,0:11:88:88,0,139:1,2,8,0 2/2:3,0,23:26:33:750,758,794,33,69,0:3,0,13,10 +chrX 2946505 . AT A 144.97 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=8.00;BaseQRankSum=-0.874;DP=70;ExcessHet=0.0000;FS=49.123;MQ=53.89;MQRankSum=-1.258;QD=8.00;ReadPosRankSum=0.935;SOR=5.278;VarDP=23 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:85:30:0,85 0/1:10,13:23:72:.:184,0,72:9,1,0,13 +chrX 2947255 . G T 1955 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=33.64;DP=90;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.64;SOR=0.950;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:85:30:0,85 1/1:0,59:59:99:.:1985,177,0:0,0,33,26 +chrX 2947889 . A G 2122 . AC=2;AF=0.667;AN=3;AS_AltDP=68;AS_QD=31.19;BaseQRankSum=1.679;DP=99;ExcessHet=0.0000;FS=4.075;MQ=59.64;MQRankSum=8.367;QD=31.19;ReadPosRankSum=-0.151;SOR=1.025;VarDP=69 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:85:30:0,85 1/1:1,68:69:99:.:2152,182,0:0,1,42,26 +chrX 2949001 . C A 1552 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=33.66;DP=78;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.66;SOR=0.919;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:85:30:0,85 1/1:0,47:47:99:.:1582,141,0:0,0,26,21 +chrX 2949372 . C T 596 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=12.27;BaseQRankSum=0.953;DP=84;ExcessHet=0.0000;FS=3.933;MQ=60.00;MQRankSum=0;QD=12.27;ReadPosRankSum=0.568;SOR=0.791;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:85:30:0,85 0/1:28,23:51:99:.:626,0,769:16,12,10,13 +chrX 2950513 . A G 675 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=13.06;BaseQRankSum=-0.637;DP=86;ExcessHet=0.0000;FS=7.625;MQ=60.00;MQRankSum=0;QD=13.06;ReadPosRankSum=-0.069;SOR=1.156;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:85:30:0,85 0/1:27,27:54:99:.:705,0,726:16,11,10,17 +chrX 2951614 . C A,CAAAAAAAAA 139 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=3,3;AS_QD=5.95,8.89;BaseQRankSum=-1.058;DP=77;ExcessHet=0.0000;FS=15.947;MQ=57.19;MQRankSum=-2.905;QD=7.68;ReadPosRankSum=-0.701;SOR=1.036;VarDP=22 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:85:30:0,85,85 0/2:16,3,3:22:56:.:169,56,812,0,361,541:14,2,2,4 +chrX 2951800 . TAA T,TA 225.97 . AC=1,0;AF=0.333,0.00;AN=3;AS_AltDP=10,8;AS_QD=10.19,8.58;BaseQRankSum=0.725;DP=77;ExcessHet=0.0000;FS=1.356;MQ=60.00;MQRankSum=0;QD=7.79;ReadPosRankSum=-0.723;SOR=0.758;VarDP=34 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:85:30:0,85,85 0/1:16,10,8:34:59:.:265,0,571,59,191,343:9,7,8,10 +chrX 2951874 . GTTTTTTT G,TTTTTTTT 820 . AC=1,0;AF=0.333,0.00;AN=3;AS_AltDP=22,3;AS_QD=21.79,0.00;BaseQRankSum=1.074;DP=80;ExcessHet=0.0000;FS=6.729;MQ=59.78;MQRankSum=0;QD=20.24;ReadPosRankSum=-0.885;SOR=1.571;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:85:30:0,85,85 0/1:17,22,3:42:99:.:850,0,774,881,437,1403:9,8,8,17 +chrX 2952272 . C T 734 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=11.75;BaseQRankSum=1.544;DP=97;ExcessHet=0.0000;FS=2.059;MQ=60.00;MQRankSum=0;QD=11.75;ReadPosRankSum=0.885;SOR=0.584;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:85:30:0,85 0/1:36,29:65:99:.:764,0,906:16,20,15,14 +chrX 2952970 . G C 664 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=13.09;BaseQRankSum=0.307;DP=84;ExcessHet=0.0000;FS=2.316;MQ=60.00;MQRankSum=0;QD=13.09;ReadPosRankSum=0.685;SOR=0.818;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:85:30:0,85 0/1:26,27:53:99:.:694,0,664:12,14,15,12 +chrX 2953433 . G A 687 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=11.56;BaseQRankSum=1.392;DP=93;ExcessHet=0.0000;FS=0.948;MQ=60.00;MQRankSum=0;QD=11.56;ReadPosRankSum=-0.637;SOR=0.836;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:85:30:0,85 0/1:34,28:62:99:.:717,0,840:17,17,13,15 +chrX 2955804 . C A 612 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=13.10;BaseQRankSum=0.929;DP=82;ExcessHet=0.0000;FS=2.657;MQ=60.00;MQRankSum=0;QD=13.10;ReadPosRankSum=-1.333;SOR=0.307;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:85:30:0,85 0/1:26,23:49:99:.:642,0,726:19,7,14,9 +chrX 2959794 . G A 618 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=13.22;BaseQRankSum=0.756;DP=80;ExcessHet=0.0000;FS=1.101;MQ=60.00;MQRankSum=0;QD=13.22;ReadPosRankSum=-0.39;SOR=0.497;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:85:30:0,85 0/1:25,24:49:99:.:648,0,632:10,15,11,13 +chrX 2959835 . T C 570 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=11.32;BaseQRankSum=-2.611;DP=86;ExcessHet=0.0000;FS=2.323;MQ=60.00;MQRankSum=0;QD=11.32;ReadPosRankSum=0.828;SOR=1.101;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:85:30:0,85 0/1:26,27:53:99:.:600,0,701:13,13,11,16 +chrX 2960255 . T C 1608 . AC=3;AF=1.00;AN=3;AS_AltDP=43;AS_QD=36.43;DP=43;ExcessHet=0.0000;FS=0.000;MQ=46.24;QD=38.09;SOR=0.739;VarDP=43 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,19:19:99:.:.:619,0:.:0,0,8,11 1|1:0,24:24:72:0|1:2960255_T_C:1019,72,0:2960255:0,0,13,11 +chrX 2960263 . C T 884 . AC=2;AF=0.667;AN=3;AS_AltDP=21;AS_QD=31.61;DP=51;ExcessHet=0.0000;FS=0.000;MQ=45.21;QD=43.52;SOR=1.230;VarDP=21 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:30:99:30:.:.:0,352 1|1:0,21:21:63:.:0|1:2960255_T_C:914,63,0:2960255:0,0,13,8 +chrX 2960294 . AGAAGAG A 199.97 . AC=1;AF=0.333;AN=3;AS_AltDP=8;AS_QD=5.98;BaseQRankSum=-0.108;DP=74;ExcessHet=0.0000;FS=23.254;MQ=57.37;MQRankSum=-4.63;QD=5.98;ReadPosRankSum=1.686;SOR=4.402;VarDP=40 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:30:99:30:.:.:0,352 0|1:32,8:40:99:.:0|1:2960255_T_C:239,0,1269:2960255:14,18,8,0 +chrX 2962853 . T C 1546 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=18.99;BaseQRankSum=-2.482;DP=85;ExcessHet=0.0000;FS=0.899;MQ=60.00;MQRankSum=0;QD=18.99;ReadPosRankSum=0.034;SOR=0.871;VarDP=83 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:903,0:0,0,19,9 0/1:26,29:55:99:673,0,685:14,12,14,15 +chrX 2963119 . G A 953 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=33.90;DP=85;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.90;SOR=0.760;VarDP=29 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,29:29:99:.:983,0:0,0,15,14 0/0:.:56:94:56:0,94,1245 +chrX 2963533 . C CT 43.97 . AC=1;AF=0.333;AN=3;AS_AltDP=9;AS_QD=4.37;BaseQRankSum=2.432;DP=75;ExcessHet=0.0000;FS=22.614;MQ=57.40;MQRankSum=-1.864;QD=4.37;ReadPosRankSum=0.369;SOR=3.014;VarDP=19 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,342 0/1:10,9:19:83:.:83,0,140:2,8,8,1 +chrX 2965549 . AT A 1337.97 . AC=2;AF=0.667;AN=3;AS_AltDP=37;AS_QD=31.97;DP=69;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=37.22;SOR=0.746;VarDP=37 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,342 1/1:0,37:37:99:.:1377,111,0:0,0,19,18 +chrX 2975005 . C CA,CAAAAA 141.97 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=5,6;AS_QD=11.77,12.93;BaseQRankSum=0;DP=73;ExcessHet=0.0000;FS=9.863;MQ=58.44;MQRankSum=-0.746;QD=9.53;ReadPosRankSum=0;SOR=0.031;VarDP=19 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,342,342 0/2:8,5,6:19:28:.:181,28,131,0,48,396:8,0,7,4 +chrX 2988813 . CA CAA,*,C,AA 611 . AC=2,0,1,0;AF=0.667,0.00,0.333,0.00;AN=3;AS_AltDP=16,1,14,6;AS_QD=20.47,0.00,14.93,19.57;BaseQRankSum=3.166;DP=75;ExcessHet=0.0000;FS=0.000;MQ=58.65;MQRankSum=2.648;QD=16.87;ReadPosRankSum=-1.04;SOR=0.245;VarDP=38 GT:AD:DP:GQ:PL:SB 1:0,8,0,0,0:8:99:140,0,140,140,140:0,0,3,5 1/3:1,8,1,14,6:30:99:501,293,361,536,416,1276,277,0,368,354,364,358,1047,136,1159:1,0,16,13 +chrX 2996505 . CCTTT CCTTTCTTTCTTTCTTT,C 1565.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=29,13;AS_QD=29.72,31.54;DP=72;ExcessHet=0.0000;FS=0.000;MQ=58.98;QD=38.21;SOR=0.788;VarDP=42 GT:AD:DP:GQ:PL:SB 1:0,11,0:11:99:492,0,494:0,0,5,6 1/2:0,18,13:31:99:1113,435,452,703,0,744:0,0,15,16 +chrX 2998968 . T TACAC 2322.97 . AC=3;AF=1.00;AN=3;AS_AltDP=58;AS_QD=26.57;DP=84;ExcessHet=0.0000;FS=0.000;MQ=59.53;QD=40.72;SOR=0.762;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,18:18:99:714,0:0,0,8,10 1/1:0,40:40:99:1648,119,0:0,0,22,18 +chrX 3001051 . G C 1066 . AC=1;AF=0.333;AN=3;AS_AltDP=42;AS_QD=16.61;BaseQRankSum=-0.804;DP=99;ExcessHet=0.0000;FS=3.441;MQ=60.00;MQRankSum=0;QD=16.61;ReadPosRankSum=0.854;SOR=0.384;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,313 0/1:24,42:66:99:.:1096,0,587:9,15,20,22 +chrX 3001371 . C T 908 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=14.89;BaseQRankSum=0.568;DP=95;ExcessHet=0.0000;FS=0.956;MQ=59.91;MQRankSum=-0.892;QD=14.89;ReadPosRankSum=0.31;SOR=0.755;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,313 0/1:29,34:63:99:.:938,0,767:14,15,18,16 +chrX 3007247 . TA T 1397.97 . AC=3;AF=1.00;AN=3;AS_AltDP=59;AS_QD=24.36;DP=82;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=24.36;SOR=0.796;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,21:21:99:513,0:0,0,10,11 1/1:0,38:38:99:924,114,0:0,0,21,17 +chrX 3008449 . TTTTCTTTC TTTTC,T 1256.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=22,10;AS_QD=28.65,31.08;BaseQRankSum=-0.162;DP=92;ExcessHet=0.0000;FS=6.154;MQ=59.78;MQRankSum=0;QD=39.27;ReadPosRankSum=-0.744;SOR=2.381;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,12,0:12:99:541,0,541:0,0,5,7 1/2:1,10,10:21:99:755,351,349,367,0,449:1,0,2,18 +chrX 3008741 . GT G 1647.97 . AC=3;AF=1.00;AN=3;AS_AltDP=60;AS_QD=27.66;BaseQRankSum=-0.237;DP=76;ExcessHet=0.0000;FS=0.000;MQ=59.72;MQRankSum=0;QD=27.66;ReadPosRankSum=-0.552;SOR=0.280;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,17:17:99:491,0:0,0,5,12 1/1:1,43:44:99:1196,103,0:1,0,27,16 +chrX 3009403 . A G 2599 . AC=3;AF=1.00;AN=3;AS_AltDP=81;AS_QD=32.46;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.46;SOR=0.934;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:943,0:0,0,14,15 1/1:0,52:52:99:1686,156,0:0,0,22,30 +chrX 3010514 . T C 2912 . AC=3;AF=1.00;AN=3;AS_AltDP=92;AS_QD=31.98;DP=93;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.98;SOR=0.829;VarDP=92 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:1022,0:0,0,19,14 1/1:0,59:59:99:1920,177,0:0,0,30,29 +chrX 3011252 . C CT 1629.97 . AC=3;AF=1.00;AN=3;AS_AltDP=70;AS_QD=23.84;DP=89;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=23.84;SOR=0.874;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:609,0:0,0,13,11 1/1:0,46:46:99:1060,136,0:0,0,25,21 +chrX 3012320 . G T 1850 . AC=3;AF=1.00;AN=3;AS_AltDP=57;AS_QD=32.98;DP=61;ExcessHet=0.0000;FS=0.000;MQ=59.81;QD=32.98;SOR=1.692;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,22:22:99:730,0:0,0,6,16 1/1:0,35:35:99:1150,105,0:0,0,12,23 +chrX 3012599 . A AT 156.97 . AC=2;AF=0.667;AN=3;AS_AltDP=7;AS_QD=28.00;DP=28;ExcessHet=0.0000;FS=0.000;MQ=54.86;QD=28.00;SOR=0.941;VarDP=7 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:11:99:11:0,225 1/1:0,7:7:20:.:196,20,0:0,0,3,4 +chrX 3012603 . T TATATATATATA,TATA,TATATA,TATATATA 1838.97 . AC=1,1,0,1;AF=0.333,0.333,0.00,0.333;AN=3;AS_AltDP=19,1,1,3;AS_QD=29.73,28.57,27.80,32.25;DP=46;ExcessHet=0.0000;FS=0.000;MQ=56.96;QD=78.25;SOR=1.802;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,19,0,0,0:19:99:855,0,855,855,855:0,0,15,4 2/4:0,0,1,1,3:5:10:1023,223,159,178,59,117,102,45,16,30,126,74,0,10,58:0,0,2,3 +chrX 3012610 . G A 2130 . AC=3;AF=1.00;AN=3;AS_AltDP=48;AS_QD=29.13;DP=48;ExcessHet=0.0000;FS=0.000;MQ=58.49;QD=45.00;SOR=1.067;VarDP=48 GT:AD:DP:GQ:PL:SB 1:0,20:20:99:900,0:0,0,16,4 1/1:0,28:28:84:1260,84,0:0,0,12,16 +chrX 3012614 . G A 2207 . AC=3;AF=1.00;AN=3;AS_AltDP=50;AS_QD=32.25;DP=50;ExcessHet=0.0000;FS=0.000;MQ=58.90;QD=44.74;SOR=1.157;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,21:21:99:938,0:0,0,16,5 1/1:0,29:29:87:1299,87,0:0,0,14,15 +chrX 3012621 . TAC T 2185.97 . AC=3;AF=1.00;AN=3;AS_AltDP=50;AS_QD=35.14;DP=52;ExcessHet=0.0000;FS=0.000;MQ=59.39;QD=44.50;SOR=1.270;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,22:22:99:971,0:0,0,17,5 1/1:0,28:28:84:1254,84,0:0,0,14,14 +chrX 3013437 . C G 2758 . AC=3;AF=1.00;AN=3;AS_AltDP=85;AS_QD=32.42;BaseQRankSum=2.947;DP=90;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=32.42;ReadPosRankSum=0.817;SOR=0.407;VarDP=86 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:1066,0:0,0,15,18 1/1:1,52:53:99:1722,149,0:0,1,20,32 +chrX 3013503 . G A 2566 . AC=3;AF=1.00;AN=3;AS_AltDP=77;AS_QD=33.71;DP=78;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.71;SOR=1.223;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:978,0:0,0,19,11 1/1:0,47:47:99:1618,141,0:0,0,28,19 +chrX 3013551 . C T 2106 . AC=3;AF=1.00;AN=3;AS_AltDP=62;AS_QD=34.45;DP=64;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=34.45;SOR=2.985;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,19:19:99:661,0:0,0,15,4 1/1:0,43:43:99:1475,129,0:0,0,36,7 +chrX 3016390 . T C 2625 . AC=3;AF=1.00;AN=3;AS_AltDP=86;AS_QD=30.87;DP=90;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.87;SOR=0.947;VarDP=86 GT:AD:DP:GQ:PL:SB 1:0,19:19:99:565,0:0,0,9,10 1/1:0,67:67:99:2090,200,0:0,0,29,38 +chrX 3016674 . C T 2819 . AC=3;AF=1.00;AN=3;AS_AltDP=87;AS_QD=32.38;BaseQRankSum=-0.344;DP=91;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=32.38;ReadPosRankSum=-1.132;SOR=0.319;VarDP=88 GT:AD:DP:GQ:PL:SB 1:1,22:23:99:690,0:1,0,11,11 1/1:0,65:65:99:2159,195,0:0,0,37,28 +chrX 3016899 . G A 3113 . AC=3;AF=1.00;AN=3;AS_AltDP=94;AS_QD=33.44;DP=97;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.44;SOR=0.780;VarDP=94 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:951,0:0,0,13,15 1/1:0,66:66:99:2192,198,0:0,0,32,34 +chrX 3017627 . G A 1199 . AC=2;AF=0.667;AN=3;AS_AltDP=40;AS_QD=18.34;BaseQRankSum=0.246;DP=72;ExcessHet=0.0000;FS=3.490;MQ=60.00;MQRankSum=0;QD=18.34;ReadPosRankSum=0.028;SOR=0.341;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:884,0:0,0,12,14 0/1:27,14:41:99:345,0,713:9,18,6,8 +chrX 3019264 . CAA C 1050.97 . AC=3;AF=1.00;AN=3;AS_AltDP=37;AS_QD=26.59;BaseQRankSum=2.272;DP=74;ExcessHet=0.0000;FS=2.147;MQ=60.00;MQRankSum=0;QD=26.59;ReadPosRankSum=-0.727;SOR=0.245;VarDP=41 GT:AD:DP:GQ:PL:SB 1:3,16:19:99:449,0:3,0,9,7 1/1:1,21:22:45:641,45,0:0,1,10,11 +chrX 3019707 . T C 2872 . AC=3;AF=1.00;AN=3;AS_AltDP=89;AS_QD=32.61;DP=93;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.61;SOR=0.715;VarDP=89 GT:AD:DP:GQ:PL:SB 1:0,38:38:99:1230,0:0,0,17,21 1/1:0,51:51:99:1672,152,0:0,0,27,24 +chrX 3020226 . G C 2000 . AC=3;AF=1.00;AN=3;AS_AltDP=61;AS_QD=33.28;DP=62;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.28;SOR=1.727;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,18:18:99:601,0:0,0,10,8 1/1:0,43:43:99:1429,129,0:0,0,32,11 +chrX 3020588 . C CA,CAA 907.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=27,18;AS_QD=26.32,27.37;BaseQRankSum=-0.384;DP=71;ExcessHet=0.0000;FS=3.840;MQ=58.50;MQRankSum=-0.226;QD=20.59;ReadPosRankSum=-0.364;SOR=0.884;VarDP=46 GT:AD:DP:GQ:PL:SB 1:0,17,0:17:99:302,0,303:0,0,8,9 1/2:1,10,18:29:99:645,281,210,160,0,125:1,0,10,18 +chrX 3020899 . T C 2760 . AC=3;AF=1.00;AN=3;AS_AltDP=91;AS_QD=30.66;DP=96;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.66;SOR=0.906;VarDP=91 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:853,0:0,0,14,14 1/1:0,63:63:99:1937,187,0:0,0,27,36 +chrX 3021707 . C CT 1307.97 . AC=3;AF=1.00;AN=3;AS_AltDP=65;AS_QD=20.72;DP=87;ExcessHet=0.0000;FS=0.000;MQ=59.82;QD=20.72;SOR=1.078;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:605,0:0,0,16,12 1/1:0,37:37:99:742,106,0:0,0,22,15 +chrX 3021881 . T TTGTG,TTGTGTG,TTG 2534.97 . AC=3,0,0;AF=1.00,0.00,0.00;AN=3;AS_AltDP=53,2,2;AS_QD=28.21,28.42,32.46;DP=84;ExcessHet=0.0000;FS=0.000;MQ=59.94;QD=45.16;SOR=0.800;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,14,2,0:16:99:826,0,379,625:0,0,8,8 1/1:0,39,0,2:41:59:1748,120,0,1539,120,1448,1204,59,1181,1084:0,0,22,19 +chrX 3024068 . T C 2665 . AC=3;AF=1.00;AN=3;AS_AltDP=82;AS_QD=32.87;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.87;SOR=0.846;VarDP=82 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:1005,0:0,0,15,16 1/1:0,51:51:99:1690,153,0:0,0,23,28 +chrX 3025546 . C CTA 2516.97 . AC=3;AF=1.00;AN=3;AS_AltDP=66;AS_QD=33.17;DP=72;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=38.73;SOR=0.886;VarDP=66 GT:AD:DP:GQ:PL:SB 1:0,21:21:99:815,0:0,0,11,10 1/1:0,45:45:99:1741,135,0:0,0,19,26 +chrX 3026496 . A C 2789 . AC=3;AF=1.00;AN=3;AS_AltDP=87;AS_QD=32.03;BaseQRankSum=3.475;DP=91;ExcessHet=0.0000;FS=4.130;MQ=60.00;MQRankSum=0;QD=32.03;ReadPosRankSum=0.158;SOR=1.053;VarDP=88 GT:AD:DP:GQ:PL:SB 1:1,32:33:99:1082,0:1,0,11,21 1/1:0,55:55:99:1737,164,0:0,0,22,33 +chrX 3029733 . G T 2601 . AC=3;AF=1.00;AN=3;AS_AltDP=80;AS_QD=32.89;DP=82;ExcessHet=0.0000;FS=0.000;MQ=59.66;QD=32.89;SOR=1.031;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:854,0:0,0,13,14 1/1:0,53:53:99:1777,159,0:0,0,21,32 +chrX 3030907 . C T 2610 . AC=3;AF=1.00;AN=3;AS_AltDP=79;AS_QD=33.42;DP=80;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.42;SOR=0.824;VarDP=79 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:933,0:0,0,18,10 1/1:0,51:51:99:1707,153,0:0,0,24,27 +chrX 3031132 . CAAA C 3148.97 . AC=3;AF=1.00;AN=3;AS_AltDP=73;AS_QD=30.80;DP=90;ExcessHet=0.0000;FS=0.000;MQ=59.81;MQRankSum=0;QD=42.51;SOR=0.898;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:1139,0:0,0,14,12 1/1:2,47:49:99:2049,112,0:1,1,19,28 +chrX 3032165 . A T 4031 . AC=3;AF=1.00;AN=3;AS_AltDP=93;AS_QD=27.32;DP=96;ExcessHet=0.0000;FS=0.000;MQ=59.79;QD=43.67;SOR=0.852;VarDP=93 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,26:26:99:.:.:1129,0:.:0,0,10,16 1|1:0,67:67:99:0|1:3032165_A_T:2932,202,0:3032165:0,0,33,34 +chrX 3032176 . C T 4109 . AC=3;AF=1.00;AN=3;AS_AltDP=95;AS_QD=28.37;DP=97;ExcessHet=0.0000;FS=0.000;MQ=59.79;QD=43.57;SOR=0.896;VarDP=95 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,26:26:99:.:.:1128,0:.:0,0,9,17 1|1:0,69:69:99:0|1:3032165_A_T:3011,208,0:3032165:0,0,34,35 +chrX 3032920 . A G 3208 . AC=3;AF=1.00;AN=3;AS_AltDP=100;AS_QD=32.38;DP=104;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.38;SOR=1.007;VarDP=100 GT:AD:DP:GQ:PL:SB 1:0,36:36:99:1176,0:0,0,17,19 1/1:0,64:64:99:2062,192,0:0,0,26,38 +chrX 3032957 . C T 3360 . AC=3;AF=1.00;AN=3;AS_AltDP=104;AS_QD=32.29;BaseQRankSum=2.942;DP=107;ExcessHet=0.0000;FS=3.491;MQ=60.00;MQRankSum=0;QD=32.29;ReadPosRankSum=0.953;SOR=0.602;VarDP=105 GT:AD:DP:GQ:PL:SB 1:1,39:40:99:1291,0:1,0,19,20 1/1:0,65:65:99:2099,195,0:0,0,27,38 +chrX 3033393 . C G 2703 . AC=3;AF=1.00;AN=3;AS_AltDP=85;AS_QD=31.78;BaseQRankSum=-0.552;DP=87;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=31.78;ReadPosRankSum=0;SOR=0.233;VarDP=86 GT:AD:DP:GQ:PL:SB 1:1,35:36:99:1036,0:0,1,16,19 1/1:0,50:50:99:1697,150,0:0,0,26,24 +chrX 3033890 . G A 2217 . AC=3;AF=1.00;AN=3;AS_AltDP=68;AS_QD=33.04;DP=71;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.04;SOR=1.098;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:923,0:0,0,19,9 1/1:0,40:40:99:1324,120,0:0,0,21,19 +chrX 3035369 . A C 2679 . AC=3;AF=1.00;AN=3;AS_AltDP=89;AS_QD=30.44;DP=99;ExcessHet=0.0000;FS=0.000;MQ=59.63;QD=30.44;SOR=1.022;VarDP=89 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:975,0:0,0,12,21 1/1:0,56:56:99:1734,167,0:0,0,26,30 +chrX 3035464 . T C 2435 . AC=3;AF=1.00;AN=3;AS_AltDP=73;AS_QD=33.77;DP=73;ExcessHet=0.0000;FS=0.000;MQ=58.69;QD=33.77;SOR=0.720;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:800,0:0,0,14,9 1/1:0,50:50:99:1665,150,0:0,0,23,27 +chrX 3035482 . T TTGTGTGTGTGTGTG 3093.97 . AC=3;AF=1.00;AN=3;AS_AltDP=70;AS_QD=32.11;DP=82;ExcessHet=0.0000;FS=0.000;MQ=58.84;QD=44.76;SOR=0.811;VarDP=70 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,26:26:99:.:.:1169,0:.:0,0,18,8 1|1:0,44:44:99:0|1:3035482_T_TTGTGTGTGTGTGTG:1964,130,0:3035482:0,0,19,25 +chrX 3035501 . G GAGAGAGAGAGAGA 3335.97 . AC=3;AF=1.00;AN=3;AS_AltDP=75;AS_QD=31.70;DP=75;ExcessHet=0.0000;FS=0.000;MQ=58.73;QD=45.00;SOR=0.832;VarDP=75 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,28:28:99:.:.:1260,0:.:0,0,19,9 1|1:0,47:47:99:0|1:3035482_T_TTGTGTGTGTGTGTG:2115,141,0:3035482:0,0,21,26 +chrX 3035503 . G A 3299 . AC=3;AF=1.00;AN=3;AS_AltDP=74;AS_QD=31.56;DP=75;ExcessHet=0.0000;FS=0.000;MQ=58.73;QD=44.99;SOR=0.804;VarDP=74 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,28:28:99:.:.:1260,0:.:0,0,19,9 1|1:0,46:46:99:0|1:3035482_T_TTGTGTGTGTGTGTG:2069,138,0:3035482:0,0,20,26 +chrX 3035505 . G A 2893 . AC=3;AF=1.00;AN=3;AS_AltDP=65;AS_QD=31.10;DP=69;ExcessHet=0.0000;FS=0.000;MQ=58.62;QD=44.97;SOR=0.723;VarDP=65 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,24:24:99:.:.:1079,0:.:0,0,17,7 1|1:0,41:41:99:0|1:3035482_T_TTGTGTGTGTGTGTG:1844,123,0:3035482:0,0,16,25 +chrX 3035542 . G C 2024 . AC=3;AF=1.00;AN=3;AS_AltDP=63;AS_QD=32.60;DP=64;ExcessHet=0.0000;FS=0.000;MQ=58.85;QD=32.60;SOR=0.724;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:749,0:0,0,13,10 1/1:0,40:40:99:1305,120,0:0,0,19,21 +chrX 3035732 . C T 2183 . AC=3;AF=1.00;AN=3;AS_AltDP=62;AS_QD=34.58;BaseQRankSum=2.065;DP=65;ExcessHet=0.0000;FS=0.000;MQ=59.71;MQRankSum=6.167;QD=34.58;ReadPosRankSum=-0.578;SOR=0.826;VarDP=64 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,26:27:99:.:.:1063,0:.:1,0,11,15 1|1:1,36:37:86:0|1:3035732_C_T:1150,86,0:3035732:0,1,18,18 +chrX 3035757 . G C 2590 . AC=3;AF=1.00;AN=3;AS_AltDP=62;AS_QD=29.12;BaseQRankSum=1.673;DP=64;ExcessHet=0.0000;FS=0.000;MQ=59.79;MQRankSum=0;QD=41.59;ReadPosRankSum=-1.434;SOR=0.223;VarDP=63 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,22:23:99:.:.:924,0:.:1,0,12,10 1|1:0,40:40:99:0|1:3035732_C_T:1696,120,0:3035732:0,0,19,21 +chrX 3036079 . G C 437 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=10.15;BaseQRankSum=0.286;DP=77;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=10.15;ReadPosRankSum=0.223;SOR=0.720;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:99:28:0,575 0/1:27,19:46:99:.:467,0,729:13,14,9,10 +chrX 3036529 . T A 2272 . AC=3;AF=1.00;AN=3;AS_AltDP=72;AS_QD=31.97;DP=74;ExcessHet=0.0000;FS=0.000;MQ=58.85;QD=31.97;SOR=0.869;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:719,0:0,0,10,13 1/1:0,49:49:99:1583,147,0:0,0,23,26 +chrX 3038580 . C A,CTAA 650 . AC=1,0;AF=0.333,0.00;AN=3;AS_AltDP=22,0;AS_QD=12.83,0.03;BaseQRankSum=1.025;DP=97;ExcessHet=0.0000;FS=3.964;MQ=60.00;MQRankSum=0;QD=12.83;ReadPosRankSum=0.072;SOR=1.298;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:27:99:27:0,193,193 0/1:31,22,0:53:99:.:680,0,1034,679,934,2111:16,15,8,14 +chrX 3039241 . A G 2234 . AC=3;AF=1.00;AN=3;AS_AltDP=74;AS_QD=30.59;DP=76;ExcessHet=0.0000;FS=0.000;MQ=55.66;QD=30.59;SOR=0.747;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:693,0:0,0,10,14 1/1:0,50:50:99:1571,149,0:0,0,28,22 +chrX 3039261 . G GT 1279.97 . AC=3;AF=1.00;AN=3;AS_AltDP=62;AS_QD=21.27;DP=79;ExcessHet=0.0000;FS=0.000;MQ=58.42;QD=21.27;SOR=0.976;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,18:18:99:398,0:0,0,10,8 1/1:0,44:44:99:921,129,0:0,0,25,19 +chrX 3040032 . A G 3712 . AC=3;AF=1.00;AN=3;AS_AltDP=85;AS_QD=33.76;DP=87;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.02;SOR=0.815;VarDP=85 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,30:30:99:.:.:1291,0:.:0,0,14,16 1|1:0,55:55:99:0|1:3040032_A_G:2451,166,0:3040032:0,0,26,29 +chrX 3040038 . C T 3668 . AC=3;AF=1.00;AN=3;AS_AltDP=84;AS_QD=27.13;DP=85;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.02;SOR=0.843;VarDP=84 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,28:28:99:.:.:1222,0:.:0,0,12,16 1|1:0,56:56:99:0|1:3040032_A_G:2476,169,0:3040032:0,0,27,29 +chrX 3040259 . C T 2447 . AC=3;AF=1.00;AN=3;AS_AltDP=76;AS_QD=32.17;BaseQRankSum=-0.288;DP=79;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=32.17;ReadPosRankSum=-0.279;SOR=0.268;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,21:21:99:675,0:0,0,11,10 1/1:1,55:56:99:1802,133,0:1,0,29,26 +chrX 3041299 . C CT 1559.97 . AC=3;AF=1.00;AN=3;AS_AltDP=66;AS_QD=24.23;DP=90;ExcessHet=0.0000;FS=0.000;MQ=59.39;QD=24.23;SOR=1.112;VarDP=66 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,23:23:99:.:.:514,0:.:0,0,14,9 1|1:0,43:43:99:0|1:3041299_C_CT:1085,129,0:3041299:0,0,25,18 +chrX 3041820 . C T 3297 . AC=3;AF=1.00;AN=3;AS_AltDP=103;AS_QD=32.30;DP=109;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.30;SOR=0.836;VarDP=103 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:1050,0:0,0,18,14 1/1:0,71:71:99:2277,213,0:0,0,30,41 +chrX 3043658 . T C 2739 . AC=3;AF=1.00;AN=3;AS_AltDP=87;AS_QD=31.83;DP=90;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.83;SOR=0.812;VarDP=87 GT:AD:DP:GQ:PL:SB 1:0,35:35:99:1147,0:0,0,18,17 1/1:0,52:52:99:1622,155,0:0,0,23,29 +chrX 3043851 . G T 2534 . AC=3;AF=1.00;AN=3;AS_AltDP=79;AS_QD=32.46;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.46;SOR=0.718;VarDP=79 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:849,0:0,0,12,14 1/1:0,53:53:99:1715,159,0:0,0,27,26 +chrX 3044070 . T C 2766 . AC=3;AF=1.00;AN=3;AS_AltDP=89;AS_QD=31.42;DP=91;ExcessHet=0.0000;FS=0.000;MQ=59.95;QD=31.42;SOR=0.715;VarDP=89 GT:AD:DP:GQ:PL:SB 1:0,34:34:99:1091,0:0,0,15,19 1/1:0,55:55:99:1705,164,0:0,0,30,25 +chrX 3044416 . T C 2216 . AC=3;AF=1.00;AN=3;AS_AltDP=71;AS_QD=31.63;DP=74;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.63;SOR=0.721;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:749,0:0,0,11,12 1/1:0,48:48:99:1497,143,0:0,0,24,24 +chrX 3044666 . T A 2162 . AC=3;AF=1.00;AN=3;AS_AltDP=65;AS_QD=33.72;DP=69;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.72;SOR=0.723;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:874,0:0,0,12,14 1/1:0,39:39:99:1318,117,0:0,0,21,18 +chrX 3045554 . CT C 225.97 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=7.16;BaseQRankSum=2.212;DP=97;ExcessHet=0.0000;FS=0.000;MQ=58.91;MQRankSum=-0.039;QD=7.16;ReadPosRankSum=-0.427;SOR=0.879;VarDP=37 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:37:99:37:0,765 0/1:20,17:37:99:.:265,0,330:12,8,11,6 +chrX 3045642 . A G 2572 . AC=3;AF=1.00;AN=3;AS_AltDP=85;AS_QD=30.61;DP=88;ExcessHet=0.0000;FS=0.000;MQ=59.22;QD=30.61;SOR=0.815;VarDP=85 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:927,0:0,0,13,17 1/1:0,55:55:99:1675,164,0:0,0,32,23 +chrX 3045712 . C T 3959 . AC=3;AF=1.00;AN=3;AS_AltDP=89;AS_QD=33.55;DP=90;ExcessHet=0.0000;FS=0.000;MQ=59.57;QD=44.82;SOR=0.911;VarDP=89 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,32:32:99:.:.:1440,0:.:0,0,14,18 1|1:0,57:57:99:0|1:3045712_C_T:2549,172,0:3045712:0,0,26,31 +chrX 3045713 . A G 3993 . AC=3;AF=1.00;AN=3;AS_AltDP=90;AS_QD=27.47;DP=91;ExcessHet=0.0000;FS=0.000;MQ=59.57;QD=44.70;SOR=0.935;VarDP=90 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,33:33:99:.:.:1474,0:.:0,0,14,19 1|1:0,57:57:99:0|1:3045712_C_T:2549,172,0:3045712:0,0,26,31 +chrX 3045716 . T C 3936 . AC=3;AF=1.00;AN=3;AS_AltDP=89;AS_QD=28.86;DP=93;ExcessHet=0.0000;FS=0.000;MQ=59.45;QD=44.56;SOR=0.859;VarDP=89 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,33:33:99:.:.:1462,0:.:0,0,15,18 1|1:0,56:56:99:0|1:3045712_C_T:2504,169,0:3045712:0,0,26,30 +chrX 3045944 . G A 2718 . AC=3;AF=1.00;AN=3;AS_AltDP=90;AS_QD=29.87;BaseQRankSum=1.88;DP=97;ExcessHet=0.0000;FS=6.868;MQ=59.59;MQRankSum=3.674;QD=29.87;ReadPosRankSum=1.907;SOR=0.506;VarDP=92 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:1097,0:0,0,23,10 1/1:2,57:59:99:1651,146,0:0,2,27,30 +chrX 3046133 . G A 2724 . AC=3;AF=1.00;AN=3;AS_AltDP=84;AS_QD=32.40;BaseQRankSum=2.58;DP=89;ExcessHet=0.0000;FS=3.062;MQ=59.95;MQRankSum=0;QD=32.40;ReadPosRankSum=-1.473;SOR=0.298;VarDP=85 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:813,0:0,0,9,16 1/1:1,59:60:99:1941,170,0:0,1,34,25 +chrX 3047041 . A G 2589 . AC=3;AF=1.00;AN=3;AS_AltDP=83;AS_QD=31.55;DP=87;ExcessHet=0.0000;FS=0.000;MQ=59.87;QD=31.55;SOR=0.717;VarDP=83 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:818,0:0,0,16,10 1/1:0,57:57:99:1801,170,0:0,0,26,31 +chrX 3047125 . T C 2647 . AC=3;AF=1.00;AN=3;AS_AltDP=86;AS_QD=31.13;DP=91;ExcessHet=0.0000;FS=0.000;MQ=59.87;QD=31.13;SOR=0.740;VarDP=86 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:1006,0:0,0,18,14 1/1:0,54:54:99:1671,161,0:0,0,26,28 +chrX 3047476 . A AG 3768.97 . AC=3;AF=1.00;AN=3;AS_AltDP=85;AS_QD=31.95;DP=89;ExcessHet=0.0000;FS=0.000;MQ=59.05;QD=44.80;SOR=0.867;VarDP=85 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,36:36:99:.:.:1608,0:.:0,0,17,19 1|1:0,49:49:99:0|1:3047476_A_AG:2200,147,0:3047476:0,0,22,27 +chrX 3047481 . T G 3783 . AC=3;AF=1.00;AN=3;AS_AltDP=85;AS_QD=31.11;DP=85;ExcessHet=0.0000;FS=0.000;MQ=59.00;QD=44.86;SOR=0.922;VarDP=85 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,36:36:99:.:.:1613,0:.:0,0,16,20 1|1:0,49:49:99:0|1:3047476_A_AG:2200,147,0:3047476:0,0,22,27 +chrX 3047485 . C T 3837 . AC=3;AF=1.00;AN=3;AS_AltDP=87;AS_QD=31.46;DP=88;ExcessHet=0.0000;FS=0.000;MQ=58.86;QD=44.45;SOR=0.863;VarDP=87 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,37:37:99:.:.:1640,0:.:0,0,16,21 1|1:0,50:50:99:0|1:3047476_A_AG:2227,151,0:3047476:0,0,24,26 +chrX 3047840 . G A 3510 . AC=3;AF=1.00;AN=3;AS_AltDP=80;AS_QD=28.63;DP=81;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.25;SOR=0.796;VarDP=80 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,24:24:99:.:.:1054,0:.:0,0,13,11 1|1:0,56:56:99:0|1:3047840_G_A:2486,169,0:3047840:0,0,29,27 +chrX 3047844 . T C 3623 . AC=3;AF=1.00;AN=3;AS_AltDP=83;AS_QD=33.16;DP=84;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.01;SOR=0.766;VarDP=83 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,24:24:99:.:.:1054,0:.:0,0,13,11 1|1:0,59:59:99:0|1:3047840_G_A:2599,178,0:3047840:0,0,30,29 +chrX 3047905 . T C 2479 . AC=3;AF=1.00;AN=3;AS_AltDP=80;AS_QD=31.36;DP=82;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.36;SOR=1.096;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,15:15:99:491,0:0,0,11,4 1/1:0,65:65:99:2018,194,0:0,0,36,29 +chrX 3047981 . A G 2128 . AC=3;AF=1.00;AN=3;AS_AltDP=66;AS_QD=32.70;DP=69;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.70;SOR=0.818;VarDP=66 GT:AD:DP:GQ:PL:SB 1:0,14:14:99:467,0:0,0,8,6 1/1:0,52:52:99:1691,156,0:0,0,27,25 +chrX 3048180 . C T 2833 . AC=3;AF=1.00;AN=3;AS_AltDP=87;AS_QD=32.91;DP=93;ExcessHet=0.0000;FS=0.000;MQ=59.84;QD=32.91;SOR=0.716;VarDP=87 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:899,0:0,0,15,12 1/1:0,60:60:99:1964,180,0:0,0,28,32 +chrX 3048208 . T A 2857 . AC=3;AF=1.00;AN=3;AS_AltDP=91;AS_QD=31.73;DP=97;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.73;SOR=0.906;VarDP=91 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:884,0:0,0,15,13 1/1:0,63:63:99:2003,189,0:0,0,35,28 +chrX 3048441 . T C 3279 . AC=3;AF=1.00;AN=3;AS_AltDP=104;AS_QD=31.51;BaseQRankSum=2.215;DP=107;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=31.51;ReadPosRankSum=-0.217;SOR=0.255;VarDP=105 GT:AD:DP:GQ:PL:SB 1:1,31:32:99:965,0:0,1,17,14 1/1:0,73:73:99:2344,219,0:0,0,33,40 +chrX 3048965 . T A 2794 . AC=3;AF=1.00;AN=3;AS_AltDP=83;AS_QD=34.02;DP=85;ExcessHet=0.0000;FS=0.000;MQ=59.84;QD=34.02;SOR=0.766;VarDP=83 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:1147,0:0,0,16,17 1/1:0,50:50:99:1677,150,0:0,0,27,23 +chrX 3048982 . C T 806 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=16.08;BaseQRankSum=0.226;DP=86;ExcessHet=0.0000;FS=0.000;MQ=59.98;MQRankSum=-0.817;QD=16.08;ReadPosRankSum=0.741;SOR=0.652;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,929 0/1:22,30:52:99:.:836,0,554:12,10,16,14 +chrX 3049015 . A G 2729 . AC=3;AF=1.00;AN=3;AS_AltDP=84;AS_QD=32.85;DP=87;ExcessHet=0.0000;FS=0.000;MQ=59.52;QD=32.85;SOR=0.693;VarDP=84 GT:AD:DP:GQ:PL:SB 1:0,36:36:99:1196,0:0,0,17,19 1/1:0,48:48:99:1563,144,0:0,0,25,23 +chrX 3049096 . G A 3222 . AC=3;AF=1.00;AN=3;AS_AltDP=98;AS_QD=33.18;DP=101;ExcessHet=0.0000;FS=0.000;MQ=59.71;QD=33.18;SOR=0.914;VarDP=98 GT:AD:DP:GQ:PL:SB 1:0,34:34:99:1117,0:0,0,17,17 1/1:0,64:64:99:2135,192,0:0,0,37,27 +chrX 3049135 . A G 3134 . AC=3;AF=1.00;AN=3;AS_AltDP=98;AS_QD=32.29;DP=103;ExcessHet=0.0000;FS=0.000;MQ=59.73;QD=32.29;SOR=0.693;VarDP=98 GT:AD:DP:GQ:PL:SB 1:0,34:34:99:1080,0:0,0,15,19 1/1:0,64:64:99:2084,192,0:0,0,34,30 +chrX 3049659 . A G 2814 . AC=3;AF=1.00;AN=3;AS_AltDP=86;AS_QD=33.07;DP=87;ExcessHet=0.0000;FS=0.000;MQ=58.69;QD=33.07;SOR=0.892;VarDP=86 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:779,0:0,0,15,9 1/1:0,62:62:99:2065,186,0:0,0,32,30 +chrX 3049929 . T C 2302 . AC=3;AF=1.00;AN=3;AS_AltDP=74;AS_QD=31.09;BaseQRankSum=2.146;DP=79;ExcessHet=0.0000;FS=0.000;MQ=59.94;MQRankSum=0;QD=31.09;ReadPosRankSum=0.095;SOR=0.601;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,20:20:99:635,0:0,0,12,8 1/1:1,54:55:99:1697,154,0:1,0,36,18 +chrX 3050069 . G C 2418 . AC=3;AF=1.00;AN=3;AS_AltDP=73;AS_QD=33.53;DP=77;ExcessHet=0.0000;FS=0.000;MQ=59.75;QD=33.53;SOR=1.917;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,20:20:99:685,0:0,0,4,16 1/1:0,53:53:99:1763,159,0:0,0,17,36 +chrX 3050391 . G A 2289 . AC=3;AF=1.00;AN=3;AS_AltDP=73;AS_QD=31.77;DP=77;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.77;SOR=0.898;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:754,0:0,0,17,7 1/1:0,49:49:99:1565,147,0:0,0,23,26 +chrX 3050546 . C CA 347.97 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=9.44;BaseQRankSum=0.018;DP=88;ExcessHet=0.0000;FS=0.000;MQ=57.31;MQRankSum=-2.968;QD=9.44;ReadPosRankSum=-0.305;SOR=0.627;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:99:28:0,549 0/1:17,24:41:99:.:387,0,258:11,6,15,9 +chrX 3050607 . T C 2490 . AC=3;AF=1.00;AN=3;AS_AltDP=79;AS_QD=31.90;DP=83;ExcessHet=0.0000;FS=0.000;MQ=54.79;QD=31.90;SOR=0.824;VarDP=79 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:963,0:0,0,16,13 1/1:0,50:50:99:1557,149,0:0,0,26,24 +chrX 3050874 . G T 3018 . AC=3;AF=1.00;AN=3;AS_AltDP=91;AS_QD=33.49;DP=95;ExcessHet=0.0000;FS=0.000;MQ=59.51;QD=33.49;SOR=0.760;VarDP=91 GT:AD:DP:GQ:PL:SB 1:0,36:36:99:1201,0:0,0,18,18 1/1:0,55:55:99:1847,165,0:0,0,29,26 +chrX 3050917 . C T 2936 . AC=3;AF=1.00;AN=3;AS_AltDP=90;AS_QD=32.96;DP=92;ExcessHet=0.0000;FS=0.000;MQ=59.34;QD=32.96;SOR=0.738;VarDP=90 GT:AD:DP:GQ:PL:SB 1:0,38:38:99:1226,0:0,0,18,20 1/1:0,52:52:99:1740,156,0:0,0,28,24 +chrX 3052690 . CA C 984.97 . AC=3;AF=1.00;AN=3;AS_AltDP=44;AS_QD=22.76;BaseQRankSum=-0.824;DP=67;ExcessHet=0.0000;FS=3.745;MQ=60.00;MQRankSum=0;QD=22.76;ReadPosRankSum=1.387;SOR=0.820;VarDP=45 GT:AD:DP:GQ:PL:SB 1:0,15:15:99:365,0:0,0,9,6 1/1:1,29:30:66:659,66,0:1,0,9,20 +chrX 3053410 . A C 1949 . AC=3;AF=1.00;AN=3;AS_AltDP=59;AS_QD=33.54;DP=61;ExcessHet=0.0000;FS=0.000;MQ=59.76;QD=33.54;SOR=0.796;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:863,0:0,0,10,16 1/1:0,33:33:99:1116,99,0:0,0,18,15 +chrX 3053639 . C T 2456 . AC=3;AF=1.00;AN=3;AS_AltDP=76;AS_QD=32.71;DP=78;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.71;SOR=1.270;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:957,0:0,0,18,12 1/1:0,46:46:99:1529,138,0:0,0,29,17 +chrX 3053758 . A AT 560.97 . AC=2;AF=0.667;AN=3;AS_AltDP=34;AS_QD=13.04;BaseQRankSum=0.627;DP=77;ExcessHet=0.0000;FS=7.874;MQ=58.87;MQRankSum=-1.159;QD=13.04;ReadPosRankSum=-0.421;SOR=0.110;VarDP=46 GT:AD:DP:GQ:PL:SB 1:0,17:17:99:342,0:0,0,6,11 0/1:12,17:29:99:258,0,164:2,10,9,8 +chrX 3061628 . A C 2324 . AC=3;AF=1.00;AN=3;AS_AltDP=73;AS_QD=31.81;BaseQRankSum=-0.477;DP=78;ExcessHet=0.0000;FS=0.000;MQ=59.71;MQRankSum=0;QD=31.81;ReadPosRankSum=1.325;SOR=0.283;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:728,0:0,0,10,13 1/1:1,50:51:99:1626,125,0:0,1,24,26 +chrX 3066912 . CT C 1138.97 . AC=3;AF=1.00;AN=3;AS_AltDP=49;AS_QD=23.10;BaseQRankSum=-0.678;DP=73;ExcessHet=0.0000;FS=9.208;MQ=60.00;MQRankSum=0;QD=23.10;ReadPosRankSum=-0.705;SOR=1.414;VarDP=51 GT:AD:DP:GQ:PL:SB 1:2,16:18:99:355,0:2,0,4,12 1/1:0,33:33:99:823,99,0:0,0,12,21 +chrX 3067416 . C T 2377 . AC=3;AF=1.00;AN=3;AS_AltDP=73;AS_QD=32.97;DP=78;ExcessHet=0.0000;FS=0.000;MQ=59.93;QD=32.97;SOR=0.720;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:814,0:0,0,13,12 1/1:0,48:48:99:1593,144,0:0,0,24,24 +chrX 3070368 . T C 2123 . AC=3;AF=1.00;AN=3;AS_AltDP=67;AS_QD=32.13;DP=72;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.13;SOR=0.723;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:794,0:0,0,11,14 1/1:0,42:42:99:1359,126,0:0,0,23,19 +chrX 3070590 . A T 2879 . AC=3;AF=1.00;AN=3;AS_AltDP=88;AS_QD=33.06;DP=89;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.06;SOR=0.997;VarDP=88 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:1087,0:0,0,19,14 1/1:0,55:55:99:1822,165,0:0,0,31,24 +chrX 3070938 . GGT G 1559.97 . AC=3;AF=1.00;AN=3;AS_AltDP=51;AS_QD=31.35;DP=86;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.35;SOR=1.094;VarDP=51 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:756,0:0,0,13,11 1/1:0,27:27:82:843,82,0:0,0,17,10 +chrX 3070994 . GGATA G 2706.97 . AC=3;AF=1.00;AN=3;AS_AltDP=62;AS_QD=30.91;BaseQRankSum=-0.52;DP=76;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=43.59;ReadPosRankSum=1.517;SOR=0.346;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:1035,0:0,0,12,11 1/1:1,39:40:76:1711,76,0:1,0,23,16 +chrX 3073648 . A ATAATTATAAATATATAATTAAATATATAATTAATAAATAT 495.97 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=16.21;BaseQRankSum=-1.887;DP=87;ExcessHet=0.0000;FS=7.731;MQ=59.32;MQRankSum=-1.404;QD=16.21;ReadPosRankSum=-3.272;SOR=1.255;VarDP=33 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,452 0/1:13,20:33:99:.:535,0,418:8,5,7,13 +chrX 3075488 . G GTC 2538.97 . AC=3;AF=1.00;AN=3;AS_AltDP=61;AS_QD=28.71;DP=66;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=42.26;SOR=0.941;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,16:16:99:672,0:0,0,10,6 1/1:0,45:45:99:1906,135,0:0,0,17,28 +chrX 3075741 . G T 2367 . AC=3;AF=1.00;AN=3;AS_AltDP=72;AS_QD=33.29;DP=80;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.29;SOR=1.002;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,21:21:99:717,0:0,0,13,8 1/1:0,51:51:99:1680,152,0:0,0,28,23 +chrX 3075897 . CTCTG C 2628.97 . AC=3;AF=1.00;AN=3;AS_AltDP=70;AS_QD=33.88;BaseQRankSum=-0.934;DP=83;ExcessHet=0.0000;FS=0.000;MQ=59.98;MQRankSum=0;QD=36.55;ReadPosRankSum=1.004;SOR=0.442;VarDP=73 GT:AD:DP:GQ:PL:SB 1:3,23:26:99:594,0:1,2,8,15 1/1:0,47:47:99:2074,142,0:0,0,25,22 +chrX 3075983 . G GTC 3180.97 . AC=3;AF=1.00;AN=3;AS_AltDP=78;AS_QD=28.89;DP=81;ExcessHet=0.0000;FS=0.000;MQ=59.76;QD=41.28;SOR=0.855;VarDP=78 GT:AD:DP:GQ:PL:SB 1:0,16:16:99:670,0:0,0,9,7 1/1:0,62:62:99:2550,186,0:0,0,33,29 +chrX 3076336 . GTC G 2351.97 . AC=3;AF=1.00;AN=3;AS_AltDP=62;AS_QD=32.61;DP=75;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=37.95;SOR=0.278;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:893,0:0,0,12,11 1/1:1,39:40:99:1498,111,0:0,1,17,22 +chrX 3076393 . T C 1953 . AC=3;AF=1.00;AN=3;AS_AltDP=63;AS_QD=31.48;DP=63;ExcessHet=0.0000;FS=0.000;MQ=59.83;QD=31.48;SOR=0.859;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:1001,0:0,0,20,11 1/1:0,32:32:95:982,95,0:0,0,14,18 +chrX 3077036 . G A 2057 . AC=3;AF=1.00;AN=3;AS_AltDP=67;AS_QD=30.69;BaseQRankSum=-0.177;DP=72;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=30.69;ReadPosRankSum=0.193;SOR=0.319;VarDP=68 GT:AD:DP:GQ:PL:SB 1:1,17:18:99:536,0:1,0,7,10 1/1:0,50:50:99:1551,148,0:0,0,30,20 +chrX 3077554 . G A 2024 . AC=3;AF=1.00;AN=3;AS_AltDP=64;AS_QD=32.09;DP=66;ExcessHet=0.0000;FS=0.000;MQ=59.75;QD=32.09;SOR=1.044;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,17:17:99:571,0:0,0,3,14 1/1:0,47:47:99:1483,140,0:0,0,24,23 +chrX 3077789 . T TTTATTATTATTATTA,TTTATTATTA,TTTTTTATTATTA,TTTATTATTATTATTATTA,TTTTTTATTATTATTATTATTA 2490.97 . AC=1,0,1,1,0;AF=0.333,0.00,0.333,0.333,0.00;AN=3;AS_AltDP=18,0,19,14,0;AS_QD=26.98,30.54,33.61,29.38,25.94;DP=78;ExcessHet=0.0000;FS=0.000;MQ=58.66;QD=49.61;SOR=1.314;VarDP=51 GT:AD:DP:GQ:PL:SB 1:0,18,0,0,0,0:18:99:796,0,798,798,798,798:0,0,12,6 3/4:0,0,0,19,14,0:33:99:1734,1635,1675,1554,1545,1532,613,667,532,640,1005,1012,984,0,953,1324,1378,1233,662,747,1390:0,0,20,13 +chrX 3077857 . T G 1902 . AC=3;AF=1.00;AN=3;AS_AltDP=61;AS_QD=31.67;DP=65;ExcessHet=0.0000;FS=0.000;MQ=58.95;QD=31.67;SOR=1.197;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,19:19:99:577,0:0,0,15,4 1/1:0,42:42:99:1355,126,0:0,0,22,20 +chrX 3078079 . T C 2564 . AC=3;AF=1.00;AN=3;AS_AltDP=83;AS_QD=31.25;DP=86;ExcessHet=0.0000;FS=0.000;MQ=59.53;QD=31.25;SOR=1.112;VarDP=83 GT:AD:DP:GQ:PL:SB 1:0,34:34:99:1087,0:0,0,15,19 1/1:0,49:49:99:1507,146,0:0,0,19,30 +chrX 3078121 . A G 2806 . AC=3;AF=1.00;AN=3;AS_AltDP=88;AS_QD=32.23;DP=91;ExcessHet=0.0000;FS=0.000;MQ=59.87;QD=32.23;SOR=0.739;VarDP=88 GT:AD:DP:GQ:PL:SB 1:0,39:39:99:1199,0:0,0,19,20 1/1:0,49:49:99:1637,147,0:0,0,24,25 +chrX 3078239 . G A 559 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=31.00;BaseQRankSum=0;DP=74;ExcessHet=0.0000;FS=3.757;MQ=60.00;MQRankSum=0;QD=31.00;ReadPosRankSum=-0.457;SOR=0.916;VarDP=19 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,18:19:99:.:589,0:0,1,11,7 0/0:.:54:99:54:0,107,1539 +chrX 3078418 . G A 2921 . AC=3;AF=1.00;AN=3;AS_AltDP=90;AS_QD=32.79;DP=90;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.79;SOR=0.832;VarDP=90 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:917,0:0,0,14,15 1/1:0,61:61:99:2034,183,0:0,0,34,27 +chrX 3079028 . C T 2444 . AC=3;AF=1.00;AN=3;AS_AltDP=76;AS_QD=32.55;DP=81;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.55;SOR=0.859;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,16:16:99:546,0:0,0,8,8 1/1:0,60:60:99:1928,179,0:0,0,27,33 +chrX 3079342 . ATT A 1210.97 . AC=3;AF=1.00;AN=3;AS_AltDP=41;AS_QD=29.76;DP=84;ExcessHet=0.0000;FS=0.000;MQ=59.14;MQRankSum=0;QD=29.76;SOR=0.298;VarDP=42 GT:AD:DP:GQ:PL:SB 1:1,16:17:99:488,0:0,1,10,6 1/1:0,25:25:75:762,75,0:0,0,11,14 +chrX 3080005 . A G 1401 . AC=3;AF=1.00;AN=3;AS_AltDP=52;AS_QD=26.02;BaseQRankSum=-0.731;DP=59;ExcessHet=0.0000;FS=0.000;MQ=59.32;MQRankSum=0;QD=26.02;ReadPosRankSum=-2.006;SOR=1.387;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:697,0:0,0,14,10 1/1:3,28:31:12:734,12,0:2,1,24,4 +chrX 3080255 . CATGAGGTCCGGAGATGCAGACCATCCTGGCCAACATG C 3994.97 . AC=3;AF=1.00;AN=3;AS_AltDP=90;AS_QD=30.79;DP=95;ExcessHet=0.0000;FS=0.000;MQ=59.75;QD=44.82;SOR=0.832;VarDP=90 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:1343,0:0,0,15,15 1/1:0,60:60:99:2691,182,0:0,0,27,33 +chrX 3080433 . T C 2621 . AC=3;AF=1.00;AN=3;AS_AltDP=85;AS_QD=31.19;DP=87;ExcessHet=0.0000;FS=0.000;MQ=59.31;QD=31.19;SOR=0.922;VarDP=85 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:955,0:0,0,18,15 1/1:0,52:52:99:1696,156,0:0,0,20,32 +chrX 3080459 . C T 2661 . AC=3;AF=1.00;AN=3;AS_AltDP=81;AS_QD=33.22;DP=85;ExcessHet=0.0000;FS=0.000;MQ=59.40;QD=33.22;SOR=0.718;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:978,0:0,0,14,16 1/1:0,51:51:99:1713,153,0:0,0,27,24 +chrX 3080472 . C CA 1607.97 . AC=3;AF=1.00;AN=3;AS_AltDP=67;AS_QD=23.87;BaseQRankSum=-0.427;DP=83;ExcessHet=0.0000;FS=3.066;MQ=59.64;MQRankSum=0;QD=23.87;ReadPosRankSum=1.258;SOR=0.111;VarDP=69 GT:AD:DP:GQ:PL:SB 1:1,28:29:99:699,0:1,0,11,17 1/1:1,39:40:92:948,92,0:1,0,23,16 +chrX 3081100 . G A 2715 . AC=3;AF=1.00;AN=3;AS_AltDP=82;AS_QD=33.07;BaseQRankSum=2.792;DP=87;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=33.07;ReadPosRankSum=-1.041;SOR=0.368;VarDP=83 GT:AD:DP:GQ:PL:SB 1:1,19:20:99:631,0:0,1,10,9 1/1:0,63:63:99:2114,189,0:0,0,25,38 +chrX 3081460 . T C 2146 . AC=3;AF=1.00;AN=3;AS_AltDP=68;AS_QD=32.00;DP=72;ExcessHet=0.0000;FS=0.000;MQ=59.81;QD=32.00;SOR=1.098;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,17:17:99:589,0:0,0,12,5 1/1:0,51:51:99:1587,153,0:0,0,28,23 +chrX 3083519 . TATCTATCTATCC T 471.97 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=15.48;BaseQRankSum=1.277;DP=80;ExcessHet=0.0000;FS=24.405;MQ=60.00;MQRankSum=0;QD=15.48;ReadPosRankSum=1.093;SOR=3.903;VarDP=33 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,450 0/1:19,14:33:99:.:511,0,713:11,8,1,13 +chrX 3083523 . TATCTATCC T,* 1396.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=25,14;AS_QD=33.86,0.00;DP=78;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=36.82;SOR=2.613;VarDP=39 GT:AD:DP:GQ:PL:SB 1:0,10,0:10:99:451,0,451:0,0,0,10 1/2:0,15,14:29:99:985,561,563,469,0,710:0,0,8,21 +chrX 3084178 . T C 2640 . AC=3;AF=1.00;AN=3;AS_AltDP=82;AS_QD=32.56;DP=85;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.56;SOR=0.846;VarDP=82 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:778,0:0,0,15,8 1/1:0,59:59:99:1892,176,0:0,0,29,30 +chrX 3084646 . A G 3016 . AC=3;AF=1.00;AN=3;AS_AltDP=91;AS_QD=33.47;DP=95;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.47;SOR=0.959;VarDP=91 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:1021,0:0,0,13,17 1/1:0,61:61:99:2025,182,0:0,0,27,34 +chrX 3085360 . A T 2320 . AC=3;AF=1.00;AN=3;AS_AltDP=73;AS_QD=32.19;DP=75;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.19;SOR=1.032;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,22:22:99:724,0:0,0,17,5 1/1:0,51:51:99:1626,153,0:0,0,25,26 +chrX 3086602 . G A 2683 . AC=3;AF=1.00;AN=3;AS_AltDP=83;AS_QD=32.30;BaseQRankSum=-0.453;DP=88;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=32.30;ReadPosRankSum=0.057;SOR=0.351;VarDP=84 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:797,0:0,0,8,15 1/1:1,60:61:99:1916,148,0:0,1,28,32 +chrX 3086661 . CA C 2169.97 . AC=3;AF=1.00;AN=3;AS_AltDP=71;AS_QD=31.11;DP=82;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.11;SOR=0.721;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,16:16:99:497,0:0,0,8,8 1/1:0,55:55:99:1712,165,0:0,0,27,28 +chrX 3087201 . G T 2956 . AC=3;AF=1.00;AN=3;AS_AltDP=92;AS_QD=32.46;DP=95;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.46;SOR=0.878;VarDP=92 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:1035,0:0,0,13,20 1/1:0,59:59:99:1951,177,0:0,0,29,30 +chrX 3087369 . C T 646 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=12.07;BaseQRankSum=-0.778;DP=85;ExcessHet=0.0000;FS=0.995;MQ=60.00;MQRankSum=0;QD=12.07;ReadPosRankSum=0.041;SOR=0.846;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:99:28:0,591 0/1:30,26:56:99:.:676,0,803:15,15,14,12 +chrX 3088564 . CT C 1243.97 . AC=3;AF=1.00;AN=3;AS_AltDP=50;AS_QD=25.16;DP=61;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=25.16;SOR=0.293;VarDP=51 GT:AD:DP:GQ:PL:SB 1:1,23:24:99:585,0:1,0,12,11 1/1:0,27:27:81:698,81,0:0,0,15,12 +chrX 3089439 . G T 2541 . AC=3;AF=1.00;AN=3;AS_AltDP=80;AS_QD=32.14;DP=82;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.14;SOR=1.310;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:1051,0:0,0,11,21 1/1:0,48:48:99:1520,143,0:0,0,19,29 +chrX 3090231 . T C 2600 . AC=3;AF=1.00;AN=3;AS_AltDP=79;AS_QD=33.29;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.29;SOR=0.718;VarDP=79 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:998,0:0,0,16,13 1/1:0,50:50:99:1632,149,0:0,0,23,27 +chrX 3090319 . T A 2589 . AC=3;AF=1.00;AN=3;AS_AltDP=78;AS_QD=33.58;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.58;SOR=1.040;VarDP=78 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:1041,0:0,0,15,17 1/1:0,46:46:99:1578,138,0:0,0,30,16 +chrX 3091047 . GCTAT G 3610.97 . AC=3;AF=1.00;AN=3;AS_AltDP=82;AS_QD=27.19;DP=87;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.51;SOR=0.793;VarDP=82 GT:AD:DP:GQ:PL:SB 1:0,35:35:99:1535,0:0,0,18,17 1/1:0,47:47:99:2115,142,0:0,0,25,22 +chrX 3091823 . T TGATA 3367.97 . AC=3;AF=1.00;AN=3;AS_AltDP=77;AS_QD=30.02;DP=80;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.25;SOR=0.948;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:1328,0:0,0,17,13 1/1:0,47:47:99:2079,141,0:0,0,17,30 +chrX 3092167 . TGATA T 1933.97 . AC=3;AF=1.00;AN=3;AS_AltDP=48;AS_QD=28.13;DP=61;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=41.10;SOR=0.693;VarDP=48 GT:AD:DP:GQ:PL:SB 1:0,16:16:99:690,0:0,0,8,8 1/1:0,32:32:96:1283,96,0:0,0,16,16 +chrX 3092215 . A G 1925 . AC=3;AF=1.00;AN=3;AS_AltDP=59;AS_QD=33.14;DP=63;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.14;SOR=0.950;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,22:22:99:709,0:0,0,11,11 1/1:0,37:37:99:1246,111,0:0,0,15,22 +chrX 3092459 . C A 2704 . AC=3;AF=1.00;AN=3;AS_AltDP=81;AS_QD=33.75;DP=84;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.75;SOR=0.876;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,34:34:99:1132,0:0,0,18,16 1/1:0,47:47:99:1602,141,0:0,0,26,21 +chrX 3092555 . C T 920 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=17.59;BaseQRankSum=-0.17;DP=88;ExcessHet=0.0000;FS=8.162;MQ=60.00;MQRankSum=0;QD=17.59;ReadPosRankSum=1.105;SOR=1.642;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,749 0/1:19,35:54:99:.:950,0,429:10,9,11,24 +chrX 3092653 . G T 2736 . AC=3;AF=1.00;AN=3;AS_AltDP=86;AS_QD=31.79;BaseQRankSum=2.945;DP=92;ExcessHet=0.0000;FS=3.267;MQ=60.00;MQRankSum=0;QD=31.79;ReadPosRankSum=0.533;SOR=0.447;VarDP=87 GT:AD:DP:GQ:PL:SB 1:0,35:35:99:1102,0:0,0,16,19 1/1:1,51:52:99:1664,145,0:1,0,24,27 +chrX 3093040 . T C 1867 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=21.31;BaseQRankSum=1.351;DP=93;ExcessHet=0.0000;FS=3.180;MQ=59.82;MQRankSum=-0.91;QD=21.31;ReadPosRankSum=-0.329;SOR=0.389;VarDP=89 GT:AD:DP:GQ:PL:SB 1:0,34:34:99:1084,0:0,0,21,13 0/1:26,29:55:99:813,0,649:17,9,14,15 +chrX 3093292 . G A 822 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=30.43;BaseQRankSum=1.815;DP=88;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=30.43;ReadPosRankSum=-0.495;SOR=0.252;VarDP=28 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,27:28:99:.:852,0:1,0,14,13 0/0:.:58:78:58:0,78,1206 +chrX 3093681 . G A 611 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=14.91;BaseQRankSum=-0.8;DP=74;ExcessHet=0.0000;FS=2.649;MQ=60.00;MQRankSum=0;QD=14.91;ReadPosRankSum=1.909;SOR=0.654;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,799 0/1:19,24:43:99:.:641,0,497:11,8,11,13 +chrX 3093710 . T G 984 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=29.82;BaseQRankSum=-0.483;DP=89;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=29.82;ReadPosRankSum=-1.071;SOR=0.368;VarDP=34 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,33:34:99:.:1014,0:1,0,19,14 0/0:.:54:56:54:0,56,1175 +chrX 3093839 . A C 882 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=30.40;BaseQRankSum=-0.417;DP=84;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=30.40;ReadPosRankSum=0.751;SOR=0.250;VarDP=30 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,29:30:99:.:912,0:0,1,14,15 0/0:.:54:56:54:0,56,1175 +chrX 3094364 . A G 799 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=33.16;DP=80;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.16;SOR=0.770;VarDP=25 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,25:25:99:.:829,0:0,0,13,12 0/0:.:54:56:54:0,56,1175 +chrX 3094991 . T G 977 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=32.48;DP=86;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.48;SOR=0.892;VarDP=31 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,31:31:99:.:1007,0:0,0,14,17 0/0:.:54:56:54:0,56,1175 +chrX 3095138 . A C 828 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=34.32;DP=79;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=34.32;SOR=0.770;VarDP=25 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,25:25:99:.:858,0:0,0,12,13 0/0:.:54:56:54:0,56,1175 +chrX 3095346 . A G 772 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=28.64;DP=84;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=28.64;SOR=0.693;VarDP=28 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,28:28:99:.:802,0:0,0,14,14 0/0:.:54:56:54:0,56,1175 +chrX 3095751 . T C 1053 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=28.17;DP=81;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.32;SOR=0.941;VarDP=25 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,25:25:99:.:1083,0:0,0,14,11 0/0:.:54:56:54:0,56,1175 +chrX 3095772 . G A 915 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=34.16;DP=76;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=45.00;SOR=0.990;VarDP=21 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,21:21:99:.:945,0:0,0,12,9 0/0:.:54:56:54:0,56,1175 +chrX 3095881 . T C 867 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=30.93;DP=84;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.93;SOR=0.760;VarDP=29 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,29:29:99:.:897,0:0,0,14,15 0/0:.:54:56:54:0,56,1175 +chrX 3096023 . G A 927 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=31.90;DP=85;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.90;SOR=0.826;VarDP=30 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,30:30:99:.:957,0:0,0,16,14 0/0:.:54:56:54:0,56,1175 +chrX 3096816 . TC T 436.97 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=31.73;DP=72;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.73;SOR=1.473;VarDP=15 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,15:15:99:.:476,0:0,0,10,5 0/0:.:54:56:54:0,56,1175 +chrX 3098047 . A AACACACACACAC,AACAC,AACACAC 2198.97 . AC=1,1,1;AF=0.333,0.333,0.333;AN=3;AS_AltDP=16,15,18;AS_QD=36.10,28.41,32.31;BaseQRankSum=-0.442;DP=80;ExcessHet=0.0000;FS=3.188;MQ=59.28;MQRankSum=0;QD=44.76;ReadPosRankSum=1.632;SOR=0.416;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,16,0,0:16:99:700,0,702,702:0,0,10,6 2/3:1,0,15,18:34:99:1538,1249,1177,466,484,378,399,417,0,309:1,0,13,20 +chrX 3098355 . T TAG 752.97 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=30.58;DP=74;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=37.71;SOR=1.508;VarDP=21 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,21:21:99:.:792,0:0,0,14,7 0/0:.:54:28:49:0,28,978 +chrX 3099029 . T C 897 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=30.90;DP=81;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.90;SOR=0.826;VarDP=30 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,30:30:99:.:927,0:0,0,16,14 0/0:.:54:28:49:0,28,978 +chrX 3100587 . G GTTTTTTGT 800.97 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=32.62;DP=72;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.21;SOR=0.793;VarDP=19 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,19:19:99:.:840,0:0,0,9,10 0/0:.:54:28:49:0,28,978 +chrX 3100644 . T C 1002 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=34.40;DP=79;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=34.40;SOR=0.693;VarDP=30 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,30:30:99:.:1032,0:0,0,15,15 0/0:.:54:28:49:0,28,978 +chrX 3100884 . C G 590 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=31.00;DP=70;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.00;SOR=1.127;VarDP=20 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,20:20:99:.:620,0:0,0,8,12 0/0:.:54:28:49:0,28,978 +chrX 3101073 . G A 729 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=29.19;BaseQRankSum=-0.454;DP=77;ExcessHet=0.0000;FS=3.736;MQ=60.00;MQRankSum=0;QD=29.19;ReadPosRankSum=-1.468;SOR=0.861;VarDP=26 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,25:26:99:.:759,0:0,1,15,10 0/0:.:54:28:49:0,28,978 +chrX 3101424 . T G 898 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=32.00;DP=78;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.00;SOR=0.760;VarDP=29 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,29:29:99:.:928,0:0,0,14,15 0/0:.:54:28:49:0,28,978 +chrX 3101833 . A G 734 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=34.73;DP=72;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=34.73;SOR=0.693;VarDP=22 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,22:22:99:.:764,0:0,0,11,11 0/0:.:54:28:49:0,28,978 +chrX 3102135 . T A,TA 672 . AC=1,0;AF=0.333,0.00;AN=3;AS_AltDP=26,0;AS_QD=27.00,29.92;DP=80;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=27.00;SOR=1.220;VarDP=26 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,26,0:26:99:.:702,0,907:0,0,10,16 0/0:.:54:28:49:0,28,978,28,978,978 +chrX 3102195 . T C 932 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=30.06;BaseQRankSum=1.803;DP=81;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=30.06;ReadPosRankSum=0.813;SOR=0.249;VarDP=32 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,31:32:99:.:962,0:1,0,16,15 0/0:.:54:28:49:0,28,978 +chrX 3102308 . A G 908 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=32.34;DP=80;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.34;SOR=1.255;VarDP=29 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,29:29:99:.:938,0:0,0,18,11 0/0:.:54:28:49:0,28,978 +chrX 3102809 . G A 1265 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=36.35;DP=78;ExcessHet=0.0000;FS=0.000;MQ=58.76;QD=44.66;SOR=0.760;VarDP=29 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,29:29:99:.:1295,0:0,0,14,15 0/0:.:54:28:49:0,28,978 +chrX 3102826 . G C 1275 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=27.19;DP=78;ExcessHet=0.0000;FS=0.000;MQ=58.44;QD=45.00;SOR=0.760;VarDP=29 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,29:29:99:.:1305,0:0,0,14,15 0/0:.:54:28:49:0,28,978 +chrX 3102827 . G A 1309 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=35.27;DP=79;ExcessHet=0.0000;FS=0.000;MQ=58.49;QD=44.63;SOR=0.826;VarDP=30 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,30:30:99:.:1339,0:0,0,14,16 0/0:.:54:28:49:0,28,978 +chrX 3102829 . G T 1309 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=28.15;DP=79;ExcessHet=0.0000;FS=0.000;MQ=58.49;QD=44.63;SOR=0.826;VarDP=30 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,30:30:99:.:1339,0:0,0,14,16 0/0:.:54:28:49:0,28,978 +chrX 3103757 . T C 664 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=34.70;DP=69;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=34.70;SOR=0.892;VarDP=20 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,20:20:99:.:694,0:0,0,9,11 0/0:.:54:28:49:0,28,978 +chrX 3105266 . A G 728 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=30.32;DP=75;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.32;SOR=0.941;VarDP=25 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,25:25:99:.:758,0:0,0,11,14 0/0:.:54:28:49:0,28,978 +chrX 3105324 . C G 869 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=33.30;DP=76;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.30;SOR=1.781;VarDP=27 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,27:27:99:.:899,0:0,0,8,19 0/0:.:54:28:49:0,28,978 +chrX 3107133 . A G 1130 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=31.35;DP=87;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.35;SOR=0.746;VarDP=37 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,37:37:99:.:1160,0:0,0,18,19 0/0:.:54:28:49:0,28,978 +chrX 3107696 . A AC 920.97 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=31.09;DP=75;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=38.40;SOR=1.358;VarDP=25 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,25:25:99:.:960,0:0,0,16,9 0/0:.:54:28:49:0,28,978 +chrX 3111077 . C T 680 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=33.81;DP=71;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.81;SOR=1.508;VarDP=21 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,21:21:99:.:710,0:0,0,14,7 0/0:.:54:28:49:0,28,978 +chrX 3111344 . G A 1032 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=33.19;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.19;SOR=0.818;VarDP=32 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,32:32:99:.:1062,0:0,0,15,17 0/0:.:54:28:49:0,28,978 +chrX 3111440 . T C 869 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=33.30;DP=76;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.30;SOR=2.066;VarDP=27 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,27:27:99:.:899,0:0,0,7,20 0/0:.:54:28:49:0,28,978 +chrX 3112535 . G GGGTCCTAACGAGAAGAGATAATTACAATCAGGCTACCAGAGGAAGCCTTT 589.97 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=27.35;BaseQRankSum=-0.253;DP=92;ExcessHet=0.0000;FS=10.809;MQ=60.00;MQRankSum=0;QD=27.35;ReadPosRankSum=-0.542;SOR=2.097;VarDP=23 GT:AD:DP:GQ:MIN_DP:PL:SB 1:2,21:23:99:.:629,0:2,0,5,16 0/0:.:54:28:49:0,28,978 +chrX 3112836 . C T 967 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=34.38;DP=78;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=34.38;SOR=1.255;VarDP=29 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,29:29:99:.:997,0:0,0,18,11 0/0:.:54:28:49:0,28,978 +chrX 3113052 . A C 1035 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=31.32;DP=84;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.32;SOR=0.811;VarDP=34 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,34:34:99:.:1065,0:0,0,16,18 0/0:.:54:28:49:0,28,978 +chrX 3113141 . C T 1031 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=30.31;DP=85;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.31;SOR=1.002;VarDP=35 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,35:35:99:.:1061,0:0,0,15,20 0/0:.:54:28:49:0,28,978 +chrX 3113291 . G A 918 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=32.69;DP=78;ExcessHet=0.0000;FS=0.000;MQ=59.80;QD=32.69;SOR=1.688;VarDP=29 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,29:29:99:.:948,0:0,0,20,9 0/0:.:54:28:49:0,28,978 +chrX 3113320 . G A 1062 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=32.12;DP=85;ExcessHet=0.0000;FS=0.000;MQ=59.84;QD=32.12;SOR=1.418;VarDP=34 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,34:34:99:.:1092,0:0,0,22,12 0/0:.:54:28:49:0,28,978 +chrX 3113631 . C T 764 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=31.76;DP=76;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.76;SOR=1.136;VarDP=25 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,25:25:99:.:794,0:0,0,15,10 0/0:.:54:28:49:0,28,978 +chrX 3113701 . G A 858 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=30.62;BaseQRankSum=-0.365;DP=79;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=30.62;ReadPosRankSum=-1.375;SOR=0.446;VarDP=29 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,28:29:99:.:888,0:1,0,17,11 0/0:.:54:28:49:0,28,978 +chrX 3114013 . A C 759 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=32.88;DP=74;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.88;SOR=1.802;VarDP=24 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,24:24:99:.:789,0:0,0,7,17 0/0:.:54:28:49:0,28,978 +chrX 3114383 . T TC 1001.97 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=25.56;DP=78;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=38.56;SOR=0.765;VarDP=27 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,27:27:99:.:1041,0:0,0,13,14 0/0:.:54:28:49:0,28,978 +chrX 3114410 . G A 828 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=31.78;DP=76;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.78;SOR=0.922;VarDP=27 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,27:27:99:.:858,0:0,0,12,15 0/0:.:54:28:49:0,28,978 +chrX 3114472 . A G 704 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=31.91;DP=74;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.91;SOR=0.776;VarDP=23 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,23:23:99:.:734,0:0,0,12,11 0/0:.:54:28:49:0,28,978 +chrX 3114527 . G T 551 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=34.18;DP=70;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=34.18;SOR=1.739;VarDP=17 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,17:17:99:.:581,0:0,0,12,5 0/0:.:54:28:49:0,28,978 +chrX 3114583 . C G 854 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=34.00;DP=76;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=34.00;SOR=0.693;VarDP=26 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,26:26:99:.:884,0:0,0,13,13 0/0:.:54:28:49:0,28,978 +chrX 3114840 . T A 875 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=33.52;DP=76;ExcessHet=0.0000;FS=0.000;MQ=49.01;QD=33.52;SOR=0.765;VarDP=27 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,27:27:99:.:905,0:0,0,14,13 0/0:.:54:28:49:0,28,978 +chrX 3115354 . C G 856 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=32.81;DP=79;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.81;SOR=1.101;VarDP=27 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,27:27:99:.:886,0:0,0,11,16 0/0:.:54:28:49:0,28,978 +chrX 3115421 . C CA 868.97 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=33.63;DP=78;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.63;SOR=0.765;VarDP=27 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,27:27:99:.:908,0:0,0,14,13 0/0:.:54:28:49:0,28,978 +chrX 3115443 . C T 675 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=32.05;DP=72;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.05;SOR=0.874;VarDP=22 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,22:22:99:.:705,0:0,0,12,10 0/0:.:54:28:49:0,28,978 +chrX 3115687 . T C 605 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=33.42;DP=70;ExcessHet=0.0000;FS=0.000;MQ=59.41;QD=33.42;SOR=1.609;VarDP=19 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,19:19:99:.:635,0:0,0,13,6 0/0:.:54:28:49:0,28,978 +chrX 3115699 . CAA C 723.97 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=22.64;DP=70;ExcessHet=0.0000;FS=0.000;MQ=59.41;QD=40.16;SOR=1.609;VarDP=19 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,19:19:99:.:763,0:0,0,13,6 0/0:.:54:28:49:0,28,978 +chrX 3115901 . T C 595 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=31.25;DP=70;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.25;SOR=0.693;VarDP=20 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,20:20:99:.:625,0:0,0,10,10 0/0:.:54:28:49:0,28,978 +chrX 3116153 . C T 1107 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=32.49;DP=84;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.49;SOR=0.749;VarDP=35 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,35:35:99:.:1137,0:0,0,17,18 0/0:.:54:28:49:0,28,978 +chrX 3116325 . G C 89 . AC=1;AF=0.333;AN=3;AS_AltDP=4;AS_QD=29.75;DP=53;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=29.75;SOR=0.693;VarDP=4 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,4:4:99:.:119,0:0,0,2,2 0/0:.:54:28:49:0,28,978 +chrX 3116584 . TA T 246.97 . AC=1;AF=0.333;AN=3;AS_AltDP=10;AS_QD=28.60;DP=63;ExcessHet=0.0000;FS=0.000;MQ=58.20;QD=28.60;SOR=2.303;VarDP=10 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,10:10:99:.:286,0:0,0,2,8 0/0:.:54:28:49:0,28,978 +chrX 3116622 . T C 734 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=30.48;DP=66;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.94;SOR=1.739;VarDP=17 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,17:17:99:.:764,0:0,0,5,12 0/0:.:54:28:49:0,28,978 +chrX 3116632 . T C 818 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=32.00;DP=70;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=42.40;SOR=2.093;VarDP=20 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,20:20:99:.:848,0:0,0,5,15 0/0:.:54:28:49:0,28,978 +chrX 3116678 . G A 750 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=33.91;DP=72;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.91;SOR=2.030;VarDP=23 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,23:23:99:.:780,0:0,0,6,17 0/0:.:54:28:49:0,28,978 +chrX 3116937 . A G 952 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=31.68;DP=81;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.68;SOR=1.402;VarDP=31 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,31:31:99:.:982,0:0,0,20,11 0/0:.:54:28:49:0,28,978 +chrX 3117005 . A G 1330 . AC=1;AF=0.333;AN=3;AS_AltDP=40;AS_QD=34.00;DP=90;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=34.00;SOR=1.022;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,40:40:99:.:1360,0:0,0,23,17 0/0:.:54:28:49:0,28,978 +chrX 3117295 . C G 959 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=31.90;DP=80;ExcessHet=0.0000;FS=0.000;MQ=53.38;QD=31.90;SOR=0.892;VarDP=31 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,31:31:99:.:989,0:0,0,14,17 0/0:.:54:28:49:0,28,978 +chrX 3117364 . A C 1532 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=30.74;DP=88;ExcessHet=0.0000;FS=0.000;MQ=51.31;QD=43.39;SOR=0.804;VarDP=36 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,36:36:99:.:1562,0:0,0,17,19 0/0:.:54:28:49:0,28,978 +chrX 3117366 . T C 1532 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=31.30;DP=87;ExcessHet=0.0000;FS=0.000;MQ=50.73;QD=43.39;SOR=0.804;VarDP=36 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,36:36:99:.:1562,0:0,0,17,19 0/0:.:54:28:49:0,28,978 +chrX 3117740 . G A 935 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=32.17;DP=81;ExcessHet=0.0000;FS=0.000;MQ=53.86;QD=32.17;SOR=0.826;VarDP=30 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,30:30:99:.:965,0:0,0,16,14 0/0:.:54:28:49:0,28,978 +chrX 3117951 . C A 1290 . AC=1;AF=0.333;AN=3;AS_AltDP=40;AS_QD=33.00;DP=89;ExcessHet=0.0000;FS=0.000;MQ=59.70;QD=33.00;SOR=0.793;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,40:40:99:.:1320,0:0,0,21,19 0/0:.:54:28:49:0,28,978 +chrX 3118108 . C T 973 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=33.43;DP=79;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.43;SOR=0.693;VarDP=30 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,30:30:99:.:1003,0:0,0,15,15 0/0:.:54:28:49:0,28,978 +chrX 3118153 . C G 779 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=32.36;DP=77;ExcessHet=0.0000;FS=0.000;MQ=59.96;QD=32.36;SOR=0.941;VarDP=25 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,25:25:99:.:809,0:0,0,14,11 0/0:.:54:28:49:0,28,978 +chrX 3118195 . G A 764 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=33.08;DP=73;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.08;SOR=0.693;VarDP=24 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,24:24:99:.:794,0:0,0,12,12 0/0:.:54:28:49:0,28,978 +chrX 3118287 . T G 858 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=32.89;DP=77;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.89;SOR=0.765;VarDP=27 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,27:27:99:.:888,0:0,0,14,13 0/0:.:54:28:49:0,28,978 +chrX 3118846 . A G 650 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=32.38;DP=70;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.38;SOR=1.828;VarDP=21 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,21:21:99:.:680,0:0,0,6,15 0/0:.:54:28:49:0,28,978 +chrX 3119073 . CT C 961.97 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=35.32;DP=74;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=41.71;SOR=1.270;VarDP=24 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,24:24:99:.:1001,0:0,0,15,9 0/0:.:54:28:49:0,28,978 +chrX 3119077 . T C 1006 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=28.25;DP=75;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=41.44;SOR=1.358;VarDP=25 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,25:25:99:.:1036,0:0,0,16,9 0/0:.:54:28:49:0,28,978 +chrX 3119145 . T A 727 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=28.04;DP=78;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=28.04;SOR=1.101;VarDP=27 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,27:27:99:.:757,0:0,0,16,11 0/0:.:54:28:49:0,28,978 +chrX 3119473 . T A 689 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=34.24;DP=71;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=34.24;SOR=0.990;VarDP=21 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,21:21:99:.:719,0:0,0,12,9 0/0:.:54:28:49:0,28,978 +chrX 3119714 . T C 972 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=31.31;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.31;SOR=1.473;VarDP=32 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,32:32:99:.:1002,0:0,0,21,11 0/0:.:54:28:49:0,28,978 +chrX 3120111 . T G 724 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=31.76;DP=68;ExcessHet=0.0000;FS=0.000;MQ=58.88;QD=41.89;SOR=0.914;VarDP=18 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,18:18:99:.:754,0:0,0,10,8 0/0:.:54:28:49:0,28,978 +chrX 3120126 . T C 690 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=36.91;DP=66;ExcessHet=0.0000;FS=0.000;MQ=58.75;QD=45.00;SOR=0.693;VarDP=16 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,16:16:99:.:720,0:0,0,8,8 0/0:.:54:28:49:0,28,978 +chrX 3120136 . C G 600 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=26.27;DP=64;ExcessHet=0.0000;FS=0.000;MQ=58.58;QD=45.00;SOR=0.976;VarDP=14 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,14:14:99:.:630,0:0,0,8,6 0/0:.:54:28:49:0,28,978 +chrX 3120139 . ATT A 545.97 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=29.79;DP=64;ExcessHet=0.0000;FS=0.000;MQ=57.43;QD=45.00;SOR=0.836;VarDP=13 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,13:13:99:.:585,0:0,0,7,6 0/0:.:54:28:49:0,28,978 +chrX 3121072 . C T 1559 . AC=2;AF=0.667;AN=3;AS_AltDP=50;AS_QD=31.78;DP=80;ExcessHet=0.0000;FS=0.000;MQ=49.87;QD=31.78;SOR=0.859;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,164 1/1:0,50:50:99:.:1589,150,0:0,0,23,27 +chrX 3121230 . T TAG 1174.97 . AC=2;AF=0.667;AN=3;AS_AltDP=27;AS_QD=30.57;DP=59;ExcessHet=0.0000;FS=0.000;MQ=39.95;QD=44.96;SOR=1.302;VarDP=27 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:29:99:29:.:.:0,164 1|1:0,27:27:81:.:0|1:3121230_T_TAG:1214,81,0:3121230:0,0,10,17 +chrX 3121232 . C CAG 1175.97 . AC=2;AF=0.667;AN=3;AS_AltDP=27;AS_QD=30.92;DP=57;ExcessHet=0.0000;FS=0.000;MQ=38.12;QD=45.00;SOR=1.302;VarDP=27 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:29:99:29:.:.:0,164 1|1:0,27:27:81:.:0|1:3121230_T_TAG:1215,81,0:3121230:0,0,10,17 +chrX 3121392 . GC G 225.97 . AC=2;AF=0.667;AN=3;AS_AltDP=6;AS_QD=32.07;DP=38;ExcessHet=0.0000;FS=0.000;MQ=51.35;QD=44.17;SOR=1.329;VarDP=6 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:29:99:29:.:.:0,164 1|1:0,6:6:18:.:0|1:3121392_GC_G:265,18,0:3121392:0,0,4,2 +chrX 3121396 . G GA 260.97 . AC=2;AF=0.667;AN=3;AS_AltDP=7;AS_QD=31.17;DP=36;ExcessHet=0.0000;FS=0.000;MQ=48.48;QD=42.86;SOR=1.609;VarDP=7 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:29:99:29:.:.:0,164 1|1:0,7:7:21:.:0|1:3121392_GC_G:300,21,0:3121392:0,0,5,2 +chrX 3121400 . G A 218 . AC=2;AF=0.667;AN=3;AS_AltDP=6;AS_QD=30.97;DP=36;ExcessHet=0.0000;FS=0.000;MQ=41.66;QD=41.33;SOR=2.303;VarDP=6 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:29:99:29:.:.:0,164 1|1:0,6:6:18:.:0|1:3121392_GC_G:248,18,0:3121392:0,0,5,1 +chrX 3121421 . A C 318 . AC=2;AF=0.667;AN=3;AS_AltDP=10;AS_QD=34.80;DP=39;ExcessHet=0.0000;FS=0.000;MQ=38.31;QD=34.80;SOR=3.258;VarDP=10 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,164 1/1:0,10:10:30:.:348,30,0:0,0,9,1 +chrX 3121440 . T A 422 . AC=2;AF=0.667;AN=3;AS_AltDP=13;AS_QD=34.77;DP=43;ExcessHet=0.0000;FS=0.000;MQ=38.89;QD=34.77;SOR=2.833;VarDP=13 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,164 1/1:0,13:13:39:.:452,39,0:0,0,11,2 +chrX 3121496 . G A 794 . AC=2;AF=0.667;AN=3;AS_AltDP=27;AS_QD=29.43;BaseQRankSum=-0.553;DP=57;ExcessHet=0.0000;FS=0.000;MQ=47.61;MQRankSum=-1.156;QD=29.43;ReadPosRankSum=0.991;SOR=1.244;VarDP=28 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,164 1/1:1,27:28:49:.:824,49,0:1,0,21,6 +chrX 3121545 . C G 1861 . AC=2;AF=0.667;AN=3;AS_AltDP=44;AS_QD=31.07;BaseQRankSum=-0.605;DP=79;ExcessHet=0.0000;FS=0.000;MQ=53.55;MQRankSum=-0.71;QD=42.02;ReadPosRankSum=-1.25;SOR=1.101;VarDP=45 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:29:99:29:.:.:0,164 1|1:1,44:45:90:.:0|1:3121545_C_G:1891,90,0:3121545:1,0,33,11 +chrX 3121548 . A G 1885 . AC=2;AF=0.667;AN=3;AS_AltDP=45;AS_QD=30.68;BaseQRankSum=-0.577;DP=80;ExcessHet=0.0000;FS=0.000;MQ=53.69;MQRankSum=-0.699;QD=41.63;ReadPosRankSum=-1.356;SOR=0.997;VarDP=46 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:29:99:29:.:.:0,164 1|1:1,45:46:93:.:0|1:3121545_C_G:1915,93,0:3121545:1,0,33,12 +chrX 3121862 . C T 2039 . AC=2;AF=0.667;AN=3;AS_AltDP=65;AS_QD=31.83;DP=98;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.83;SOR=0.925;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,164 1/1:0,65:65:99:.:2069,195,0:0,0,29,36 +chrX 3121956 . G A 1913 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=32.38;DP=91;ExcessHet=0.0000;FS=0.000;MQ=58.03;QD=32.38;SOR=0.906;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,164 1/1:0,60:60:99:.:1943,180,0:0,0,33,27 +chrX 3122034 . C G 1064 . AC=2;AF=0.667;AN=3;AS_AltDP=38;AS_QD=28.79;DP=68;ExcessHet=0.0000;FS=0.000;MQ=54.79;QD=28.79;SOR=0.798;VarDP=38 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,164 1/1:0,38:38:99:.:1094,113,0:0,0,18,20 +chrX 3122138 . G A 1604 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=34.77;DP=78;ExcessHet=0.0000;FS=0.000;MQ=50.58;QD=34.77;SOR=1.022;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,164 1/1:0,47:47:99:.:1634,141,0:0,0,20,27 +chrX 3122161 . T G 1573 . AC=2;AF=0.667;AN=3;AS_AltDP=49;AS_QD=32.71;DP=79;ExcessHet=0.0000;FS=0.000;MQ=49.79;QD=32.71;SOR=0.818;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,164 1/1:0,49:49:99:.:1603,146,0:0,0,26,23 +chrX 3122360 . A C 2149 . AC=2;AF=0.667;AN=3;AS_AltDP=68;AS_QD=31.58;BaseQRankSum=-0.492;DP=100;ExcessHet=0.0000;FS=0.000;MQ=50.91;MQRankSum=-0.98;QD=31.58;ReadPosRankSum=0.678;SOR=0.368;VarDP=69 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,164 1/1:1,68:69:99:.:2179,173,0:1,0,39,29 +chrX 3122389 . TC T 2753.97 . AC=2;AF=0.667;AN=3;AS_AltDP=72;AS_QD=31.85;BaseQRankSum=-0.474;DP=104;ExcessHet=0.0000;FS=0.000;MQ=53.57;MQRankSum=-0.773;QD=38.26;ReadPosRankSum=-1.068;SOR=0.471;VarDP=73 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,164 1/1:1,72:73:99:.:2793,180,0:1,0,44,28 +chrX 3122568 . T C 1915 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=31.37;DP=93;ExcessHet=0.0000;FS=0.000;MQ=45.69;QD=31.37;SOR=0.976;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,164 1/1:0,62:62:99:.:1945,185,0:0,0,27,35 +chrX 3122659 . T C 1829 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=31.51;DP=89;ExcessHet=0.0000;FS=0.000;MQ=52.25;QD=31.51;SOR=1.034;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,164 1/1:0,59:59:99:.:1859,176,0:0,0,25,34 +chrX 3122905 . T C 1787 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=30.28;DP=89;ExcessHet=0.0000;FS=0.000;MQ=42.86;QD=30.28;SOR=0.831;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,164 1/1:0,60:60:99:.:1817,179,0:0,0,28,32 +chrX 3123210 . A G 1207 . AC=2;AF=0.667;AN=3;AS_AltDP=41;AS_QD=30.17;DP=71;ExcessHet=0.0000;FS=0.000;MQ=38.97;QD=30.17;SOR=1.075;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,164 1/1:0,41:41:99:.:1237,121,0:0,0,24,17 +chrX 3123424 . C T 2055 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=33.10;DP=93;ExcessHet=0.0000;FS=0.000;MQ=43.58;QD=33.10;SOR=1.179;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,164 1/1:0,63:63:99:.:2085,189,0:0,0,38,25 +chrX 3123576 . A G 1692 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=32.49;BaseQRankSum=-0.258;DP=85;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=32.49;ReadPosRankSum=0.327;SOR=0.290;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,164 1/1:1,52:53:99:.:1722,125,0:0,1,24,28 +chrX 3123821 . C T 1572 . AC=2;AF=0.667;AN=3;AS_AltDP=49;AS_QD=32.69;DP=80;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.69;SOR=0.733;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,164 1/1:0,49:49:99:.:1602,147,0:0,0,25,24 +chrX 3124076 . CAAAAAA C 963.97 . AC=2;AF=0.667;AN=3;AS_AltDP=24;AS_QD=31.10;BaseQRankSum=-0.711;DP=72;ExcessHet=0.0000;FS=2.447;MQ=60.00;MQRankSum=0;QD=37.15;ReadPosRankSum=-0.487;SOR=0.835;VarDP=27 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,164 1/1:3,24:27:23:.:1003,23,0:1,2,14,10 +chrX 3124188 . T G 1749 . AC=2;AF=0.667;AN=3;AS_AltDP=40;AS_QD=24.55;DP=71;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.48;SOR=0.793;VarDP=40 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:29:99:29:.:.:0,164 1|1:0,40:40:99:.:0|1:3124188_T_G:1779,120,0:3124188:0,0,21,19 +chrX 3124196 . G T 1747 . AC=2;AF=0.667;AN=3;AS_AltDP=40;AS_QD=32.14;DP=69;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.43;SOR=0.793;VarDP=40 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:29:99:29:.:.:0,164 1|1:0,40:40:99:.:0|1:3124188_T_G:1777,120,0:3124188:0,0,21,19 +chrX 3124511 . T C 1786 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=30.78;BaseQRankSum=1.567;DP=89;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=30.78;ReadPosRankSum=-1.527;SOR=0.223;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,164 1/1:1,58:59:99:.:1816,152,0:0,1,29,29 +chrX 3124639 . T G 1219 . AC=2;AF=0.667;AN=3;AS_AltDP=39;AS_QD=32.03;DP=70;ExcessHet=0.0000;FS=0.000;MQ=50.81;QD=32.03;SOR=0.743;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,164 1/1:0,39:39:99:.:1249,117,0:0,0,19,20 +chrX 3125173 . G A 1702 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=33.31;BaseQRankSum=2.926;DP=84;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=33.31;ReadPosRankSum=-1.1;SOR=0.273;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,164 1/1:1,51:52:99:.:1732,146,0:0,1,24,27 +chrX 3125410 . TC T 1868.97 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=39.17;DP=84;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=37.41;SOR=0.994;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,164 1/1:0,51:51:99:.:1908,152,0:0,0,29,22 +chrX 3125574 . CTT C 1358.97 . AC=2;AF=0.667;AN=3;AS_AltDP=37;AS_QD=29.19;DP=70;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=37.78;SOR=0.984;VarDP=37 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,164 1/1:0,37:37:99:.:1398,111,0:0,0,16,21 +chrX 3125658 . T C 1793 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=32.55;DP=86;ExcessHet=0.0000;FS=0.000;MQ=59.95;QD=32.55;SOR=1.199;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,164 1/1:0,56:56:99:.:1823,167,0:0,0,34,22 +chrX 3125867 . T C 1739 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=32.16;DP=86;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.16;SOR=0.729;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,164 1/1:0,55:55:99:.:1769,164,0:0,0,28,27 +chrX 3126022 . T C 1735 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=30.96;DP=86;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.96;SOR=1.047;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,164 1/1:0,57:57:99:.:1765,170,0:0,0,24,33 +chrX 3126071 . CA C 1455.97 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=27.69;BaseQRankSum=1.818;DP=96;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=27.69;ReadPosRankSum=1.316;SOR=0.446;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,164 1/1:1,53:54:99:.:1495,136,0:0,1,21,32 +chrX 3126293 . C T 1702 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=33.31;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.31;SOR=0.941;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,164 1/1:0,52:52:99:.:1732,156,0:0,0,23,29 +chrX 3126625 . C T 1105 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=31.53;DP=95;ExcessHet=0.0000;FS=0.000;MQ=58.54;QD=31.53;SOR=0.804;VarDP=36 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,36:36:99:.:1135,0:0,0,17,19 0/0:.:59:85:59:0,85,1105 +chrX 3126901 . AAAAC A 654.97 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=22.39;BaseQRankSum=-1.63;DP=71;ExcessHet=0.0000;FS=1.385;MQ=60.00;MQRankSum=0;QD=22.39;ReadPosRankSum=-0.12;SOR=1.002;VarDP=31 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,332 0/1:13,18:31:99:.:694,0,491:7,6,11,7 +chrX 3137133 . A AT 820.97 . AC=2;AF=0.667;AN=3;AS_AltDP=34;AS_QD=25.29;DP=82;ExcessHet=0.0000;FS=0.000;MQ=59.77;QD=25.29;SOR=0.693;VarDP=34 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:32:99:32:.:.:0,332 1|1:0,34:34:99:.:0|1:3137133_A_AT:860,101,0:3137133:0,0,17,17 +chrX 3144796 . G GTC 258.97 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=12.96;BaseQRankSum=-0.997;DP=62;ExcessHet=0.0000;FS=3.834;MQ=60.00;MQRankSum=0;QD=12.96;ReadPosRankSum=-2.53;SOR=1.139;VarDP=23 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,332 0/1:12,11:23:99:.:298,0,344:7,5,4,7 +chrX 3146340 . CTCTTCTTCT C,CTCTTCTTCTTCTTCT 903.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=13,11;AS_QD=24.13,18.48;BaseQRankSum=-1.393;DP=78;ExcessHet=0.0000;FS=5.685;MQ=59.52;MQRankSum=1.591;QD=27.74;ReadPosRankSum=-0.741;SOR=0.477;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,13,0:13:99:555,0,555:0,0,7,6 0/2:10,0,11:21:99:388,420,821,0,401,369:7,3,4,7 +chrX 3146404 . T TCTC,TCTTCTTCTC 415.97 . AC=1,0;AF=0.333,0.00;AN=3;AS_AltDP=5,0;AS_QD=16.85,10.95;BaseQRankSum=-1.793;DP=84;ExcessHet=0.0000;FS=4.312;MQ=58.68;MQRankSum=-2.002;QD=16.85;ReadPosRankSum=1.312;SOR=0.760;VarDP=27 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,432,432 0/1:22,5,0:27:99:.:455,0,848,214,758,1190:8,14,3,2 +chrX 3155718 . A ATATC 494.97 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=23.22;BaseQRankSum=-0.676;DP=76;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=23.22;ReadPosRankSum=-0.284;SOR=0.765;VarDP=23 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,432 0/1:9,14:23:99:.:534,0,322:5,4,8,6 +chrX 3155790 . GTATC G,GTATCTATC 1201.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=17,14;AS_QD=22.87,19.00;BaseQRankSum=0.323;DP=77;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=27.58;ReadPosRankSum=0.069;SOR=0.749;VarDP=45 GT:AD:DP:GQ:PL:SB 1:0,17,0:17:99:709,0,709:0,0,9,8 0/2:14,0,14:28:99:532,575,1151,0,576,534:8,6,9,5 +chrX 3158638 . C CA,CAA 190.97 . AC=1,0;AF=0.333,0.00;AN=3;AS_AltDP=6,4;AS_QD=17.69,17.91;BaseQRankSum=-0.444;DP=62;ExcessHet=0.0000;FS=4.752;MQ=59.80;MQRankSum=-0.717;QD=13.53;ReadPosRankSum=0.049;SOR=0.793;VarDP=17 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,248,248 0/1:7,6,4:17:28:.:230,0,60,33,28,155:5,2,4,6 +chrX 3189855 . GTATATATATA G,GTATATATATATA,GTATATATATATATA,GTATATATATATATATA 1511.97 . AC=1,1,1,0;AF=0.333,0.333,0.333,0.00;AN=3;AS_AltDP=22,5,6,0;AS_QD=31.07,27.32,31.03,25.34;BaseQRankSum=-0.418;DP=74;ExcessHet=0.0000;FS=3.136;MQ=59.17;MQRankSum=0;QD=44.31;ReadPosRankSum=1.584;SOR=0.209;VarDP=35 GT:AD:DP:GQ:PL:SB 1:2,22,0,0,0:24:99:919,0,950,950,950:0,2,11,11 2/3:0,0,5,6,0:11:85:632,416,376,283,246,228,126,119,0,85,297,274,129,118,334:0,0,6,5 +chrX 3190710 . A G 2748 . AC=3;AF=1.00;AN=3;AS_AltDP=85;AS_QD=32.68;DP=91;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.68;SOR=0.815;VarDP=85 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:764,0:0,0,15,9 1/1:0,61:61:99:2014,183,0:0,0,25,36 +chrX 3191148 . CAG C 2337.97 . AC=3;AF=1.00;AN=3;AS_AltDP=75;AS_QD=31.69;DP=108;ExcessHet=0.0000;FS=0.000;MQ=59.78;QD=31.69;SOR=1.240;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:824,0:0,0,17,9 1/1:0,49:49:99:1553,148,0:0,0,29,20 +chrX 3205941 . C G 774 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=15.17;BaseQRankSum=1.941;DP=85;ExcessHet=0.0000;FS=8.122;MQ=60.00;MQRankSum=0;QD=15.17;ReadPosRankSum=-0.259;SOR=1.942;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,209 0/1:24,29:53:99:.:804,0,593:12,12,21,8 +chrX 3208875 . T A 513 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=15.08;BaseQRankSum=-0.159;DP=69;ExcessHet=0.0000;FS=1.258;MQ=60.00;MQRankSum=0;QD=15.08;ReadPosRankSum=1.592;SOR=0.495;VarDP=36 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,209 0/1:16,20:36:99:.:543,0,414:9,7,10,10 +chrX 3209190 . G A 935 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=14.40;BaseQRankSum=1.997;DP=99;ExcessHet=0.0000;FS=0.937;MQ=60.00;MQRankSum=0;QD=14.40;ReadPosRankSum=2.405;SOR=0.518;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,209 0/1:32,35:67:99:.:965,0,771:19,13,19,16 +chrX 3209281 . T C 636 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=12.33;BaseQRankSum=1.024;DP=85;ExcessHet=0.0000;FS=2.323;MQ=60.00;MQRankSum=0;QD=12.33;ReadPosRankSum=0.252;SOR=0.807;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,209 0/1:29,25:54:99:.:666,0,765:13,16,14,11 +chrX 3209387 . A G 828 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=16.19;BaseQRankSum=-1.539;DP=87;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=16.19;ReadPosRankSum=1.111;SOR=0.743;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,209 0/1:22,31:53:99:.:858,0,595:8,14,11,20 +chrX 3209794 . C T 516 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=13.65;BaseQRankSum=1.856;DP=71;ExcessHet=0.0000;FS=4.677;MQ=60.00;MQRankSum=0;QD=13.65;ReadPosRankSum=-2.003;SOR=1.324;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,209 0/1:20,20:40:99:.:546,0,465:9,11,13,7 +chrX 3209904 . CATCT CATCTATCT,C 1478.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=21,15;AS_QD=26.22,19.13;BaseQRankSum=0.495;DP=76;ExcessHet=0.0000;FS=6.289;MQ=60.00;MQRankSum=0;QD=29.76;ReadPosRankSum=-0.899;SOR=0.427;VarDP=51 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:944,0,945:0,0,9,12 0/2:15,0,15:30:99:574,620,1236,0,617,571:5,10,10,5 +chrX 3209977 . CATCT C 805.97 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=20.12;BaseQRankSum=-0.94;DP=75;ExcessHet=0.0000;FS=2.701;MQ=60.00;MQRankSum=0;QD=20.12;ReadPosRankSum=1.462;SOR=0.976;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,501 0/1:20,22:42:99:.:845,0,773:9,11,13,9 +chrX 3212035 . C T 884 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=13.06;BaseQRankSum=1.871;DP=101;ExcessHet=0.0000;FS=2.002;MQ=56.78;MQRankSum=-1.968;QD=13.06;ReadPosRankSum=2.071;SOR=0.433;VarDP=70 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,501 0/1:37,33:70:99:.:914,0,981:15,22,16,17 +chrX 3212799 . C T 974 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=17.02;BaseQRankSum=-1.625;DP=92;ExcessHet=0.0000;FS=1.025;MQ=59.94;MQRankSum=-0.765;QD=17.02;ReadPosRankSum=0.078;SOR=0.481;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,501 0/1:23,36:59:99:.:1004,0,610:13,10,18,18 +chrX 3213202 . TTA T 903.97 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=22.45;BaseQRankSum=2.448;DP=76;ExcessHet=0.0000;FS=2.659;MQ=60.00;MQRankSum=0;QD=22.45;ReadPosRankSum=-0.397;SOR=0.368;VarDP=42 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:29:99:29:.:.:0,501 0|1:18,24:42:99:.:0|1:3213202_TTA_T:943,0,657:3213202:7,11,12,12 +chrX 3213214 . A G 907 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=21.30;BaseQRankSum=1.277;DP=73;ExcessHet=0.0000;FS=1.130;MQ=60.00;MQRankSum=0;QD=21.30;ReadPosRankSum=-0.248;SOR=0.527;VarDP=44 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:29:99:29:.:.:0,501 0|1:20,24:44:99:.:0|1:3213202_TTA_T:937,0,720:3213202:9,11,12,12 +chrX 3213854 . T TTTC 551.97 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=13.43;BaseQRankSum=1.174;DP=80;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.43;ReadPosRankSum=-0.27;SOR=0.859;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,501 0/1:21,23:44:99:.:591,0,638:11,10,13,10 +chrX 3215107 . T C 809 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=14.72;BaseQRankSum=-0.326;DP=86;ExcessHet=0.0000;FS=1.022;MQ=60.00;MQRankSum=0;QD=14.72;ReadPosRankSum=1.223;SOR=0.495;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,501 0/1:27,30:57:99:.:839,0,745:16,11,16,14 +chrX 3215916 . T A 747 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=31.08;DP=88;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.08;SOR=0.770;VarDP=25 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,25:25:99:.:777,0:0,0,12,13 0/0:.:63:99:63:0,113,1549 +chrX 3216471 . G A 1091 . AC=1;AF=0.333;AN=3;AS_AltDP=41;AS_QD=16.98;BaseQRankSum=0.145;DP=98;ExcessHet=0.0000;FS=3.445;MQ=60.00;MQRankSum=0;QD=16.98;ReadPosRankSum=-0.582;SOR=1.026;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,357 0/1:25,41:66:99:.:1121,0,611:13,12,17,24 +chrX 3216691 . T G 914 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=17.81;BaseQRankSum=0.163;DP=84;ExcessHet=0.0000;FS=2.443;MQ=60.00;MQRankSum=0;QD=17.81;ReadPosRankSum=-0.266;SOR=1.179;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,357 0/1:20,33:53:99:.:944,0,486:10,10,13,20 +chrX 3218113 . C A 524 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=10.07;BaseQRankSum=0.949;DP=85;ExcessHet=0.0000;FS=12.331;MQ=60.00;MQRankSum=0;QD=10.07;ReadPosRankSum=0.052;SOR=1.140;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,357 0/1:33,22:55:99:.:554,0,857:12,21,14,8 +chrX 3218266 . C T 888 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=32.79;DP=81;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.79;SOR=1.382;VarDP=28 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,28:28:99:.:918,0:0,0,18,10 0/0:.:52:41:52:0,41,1195 +chrX 3218482 . A AG 657.97 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=13.15;BaseQRankSum=-0.287;DP=85;ExcessHet=0.0000;FS=10.098;MQ=60.00;MQRankSum=0;QD=13.15;ReadPosRankSum=-0.73;SOR=1.739;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,362 0/1:26,27:53:99:.:697,0,724:12,14,19,8 +chrX 3218793 . AAGAT A 890.97 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=18.60;BaseQRankSum=-2.075;DP=81;ExcessHet=0.0000;FS=1.114;MQ=60.00;MQRankSum=0;QD=18.60;ReadPosRankSum=-0.3;SOR=0.914;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,362 0/1:26,24:50:99:.:930,0,999:16,10,16,8 +chrX 3218857 . AAAG A 683.97 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=16.43;BaseQRankSum=0.794;DP=77;ExcessHet=0.0000;FS=1.358;MQ=59.88;MQRankSum=-1.101;QD=16.43;ReadPosRankSum=1.441;SOR=1.035;VarDP=44 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:30:99:30:.:.:0,362 0|1:25,19:44:99:.:0|1:3218857_AAAG_A:723,0,986:3218857:18,7,15,4 +chrX 3218874 . AGGAAGGGAGGAAG A 725.97 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=17.00;BaseQRankSum=0.026;DP=75;ExcessHet=0.0000;FS=0.000;MQ=59.87;MQRankSum=-1.073;QD=17.00;ReadPosRankSum=-0.541;SOR=0.882;VarDP=45 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:30:99:30:.:.:0,362 0|1:25,20:45:99:.:0|1:3218857_AAAG_A:765,0,977:3218857:19,6,16,4 +chrX 3218940 . C A 730 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=16.52;BaseQRankSum=1.178;DP=78;ExcessHet=0.0000;FS=6.474;MQ=60.00;MQRankSum=0;QD=16.52;ReadPosRankSum=-0.466;SOR=0.191;VarDP=46 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:30:99:30:.:.:0,362 0|1:25,21:46:99:.:0|1:3218940_C_A:760,0,919:3218940:18,7,11,10 +chrX 3218958 . AAG A 880.97 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=18.40;BaseQRankSum=-0.057;DP=82;ExcessHet=0.0000;FS=8.387;MQ=60.00;MQRankSum=0;QD=18.40;ReadPosRankSum=-0.27;SOR=0.148;VarDP=50 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:30:99:30:.:.:0,362 0|1:26,24:50:99:.:0|1:3218940_C_A:920,0,986:3218940:19,7,12,12 +chrX 3218999 . A G 978 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=19.38;BaseQRankSum=-1.605;DP=82;ExcessHet=0.0000;FS=7.513;MQ=59.53;MQRankSum=-0.924;QD=19.38;ReadPosRankSum=-0.403;SOR=0.621;VarDP=52 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:30:99:30:.:.:0,362 0|1:25,27:52:99:.:0|1:3218999_A_G:1008,0,907:3218999:16,9,12,15 +chrX 3219011 . AAAGAGAG A 1099.97 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=20.71;BaseQRankSum=0.816;DP=85;ExcessHet=0.0000;FS=9.746;MQ=59.56;MQRankSum=-0.91;QD=20.71;ReadPosRankSum=-0.352;SOR=0.800;VarDP=55 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:30:99:30:.:.:0,362 0|1:26,29:55:99:.:0|1:3218999_A_G:1139,0,973:3218999:17,9,12,17 +chrX 3219041 . G GAGAAAGA 1092.97 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=21.77;BaseQRankSum=-0.903;DP=88;ExcessHet=0.0000;FS=7.927;MQ=59.58;MQRankSum=-0.852;QD=21.77;ReadPosRankSum=0.784;SOR=1.367;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,362 0/1:23,29:52:99:.:1132,0,845:13,10,10,19 +chrX 3219504 . T C 607 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=13.00;BaseQRankSum=-0.221;DP=79;ExcessHet=0.0000;FS=2.434;MQ=60.00;MQRankSum=0;QD=13.00;ReadPosRankSum=-0.17;SOR=0.529;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,362 0/1:24,25:49:99:.:637,0,613:10,14,13,12 +chrX 3219650 . G A 661 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=14.70;BaseQRankSum=1.067;DP=78;ExcessHet=0.0000;FS=4.123;MQ=60.00;MQRankSum=0;QD=14.70;ReadPosRankSum=-1.301;SOR=1.041;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,362 0/1:22,25:47:99:.:691,0,554:12,10,10,15 +chrX 3219872 . T G 790 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=12.81;BaseQRankSum=0.575;DP=94;ExcessHet=0.0000;FS=2.073;MQ=60.00;MQRankSum=0;QD=12.81;ReadPosRankSum=0.491;SOR=0.997;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,362 0/1:34,30:64:99:.:820,0,939:18,16,18,12 +chrX 3220033 . C G 823 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=12.54;BaseQRankSum=0.586;DP=98;ExcessHet=0.0000;FS=3.305;MQ=60.00;MQRankSum=0;QD=12.54;ReadPosRankSum=1.405;SOR=0.790;VarDP=68 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,362 0/1:34,34:68:99:.:853,0,817:15,19,19,15 +chrX 3220156 . T C 738 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=15.36;BaseQRankSum=-0.61;DP=82;ExcessHet=0.0000;FS=1.142;MQ=59.68;MQRankSum=-0.776;QD=15.36;ReadPosRankSum=-0.158;SOR=0.432;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,362 0/1:20,30:50:99:.:768,0,491:7,13,13,17 +chrX 3220174 . T G 637 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=16.27;BaseQRankSum=1.353;DP=75;ExcessHet=0.0000;FS=1.298;MQ=60.00;MQRankSum=0;QD=16.27;ReadPosRankSum=-0.342;SOR=0.458;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,362 0/1:18,23:41:99:.:667,0,455:5,13,8,15 +chrX 3220318 . C G 542 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=13.95;BaseQRankSum=1.763;DP=71;ExcessHet=0.0000;FS=6.684;MQ=60.00;MQRankSum=0;QD=13.95;ReadPosRankSum=0.914;SOR=0.545;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,362 0/1:21,20:41:99:.:572,0,577:14,7,9,11 +chrX 3220886 . G A 1007 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=15.48;BaseQRankSum=-0.644;DP=98;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=15.48;ReadPosRankSum=-0.581;SOR=0.680;VarDP=67 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:30:99:30:.:.:0,362 0|1:39,28:67:99:.:0|1:3220886_G_A:1037,0,1551:3220886:18,21,13,15 +chrX 3220892 . C T 1070 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=15.94;BaseQRankSum=1.243;DP=100;ExcessHet=0.0000;FS=0.911;MQ=60.00;MQRankSum=0;QD=15.94;ReadPosRankSum=-0.975;SOR=0.557;VarDP=69 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:30:99:30:.:.:0,362 0|1:39,30:69:99:.:0|1:3220886_G_A:1100,0,1545:3220886:18,21,15,15 +chrX 3220921 . T G 757 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=11.08;BaseQRankSum=-0.757;DP=103;ExcessHet=0.0000;FS=2.009;MQ=60.00;MQRankSum=0;QD=11.08;ReadPosRankSum=0.116;SOR=0.418;VarDP=71 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,362 0/1:39,32:71:99:.:787,0,1056:24,15,17,15 +chrX 3221022 . T C 735 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=12.97;BaseQRankSum=2.276;DP=98;ExcessHet=0.0000;FS=5.296;MQ=60.00;MQRankSum=0;QD=12.97;ReadPosRankSum=0.425;SOR=1.353;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,362 0/1:31,28:59:99:.:765,0,756:15,16,18,10 +chrX 3221260 . G T 1099 . AC=1;AF=0.333;AN=3;AS_AltDP=41;AS_QD=14.11;BaseQRankSum=3.279;DP=121;ExcessHet=0.0000;FS=1.859;MQ=60.00;MQRankSum=0;QD=14.11;ReadPosRankSum=-0.298;SOR=0.496;VarDP=80 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,362 0/1:39,41:80:99:.:1129,0,905:25,14,24,17 +chrX 3221330 . C T 821 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=11.82;BaseQRankSum=0.676;DP=112;ExcessHet=0.0000;FS=0.900;MQ=60.00;MQRankSum=0;QD=11.82;ReadPosRankSum=-0.006;SOR=0.523;VarDP=72 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,362 0/1:39,33:72:99:.:851,0,1004:22,17,17,16 +chrX 3221409 . A AT 768.97 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=15.84;BaseQRankSum=-0.475;DP=97;ExcessHet=0.0000;FS=15.894;MQ=60.00;MQRankSum=0;QD=15.84;ReadPosRankSum=-1.032;SOR=0.045;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,362 0/1:20,31:51:99:.:808,0,469:2,18,13,18 +chrX 3221913 . T C 360 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=8.67;BaseQRankSum=-0.02;DP=79;ExcessHet=0.0000;FS=9.277;MQ=60.00;MQRankSum=0;QD=8.67;ReadPosRankSum=0.095;SOR=2.033;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,362 0/1:29,16:45:99:.:390,0,834:15,14,4,12 +chrX 3222441 . T C 968 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=14.06;BaseQRankSum=-0.066;DP=105;ExcessHet=0.0000;FS=0.893;MQ=60.00;MQRankSum=0;QD=14.06;ReadPosRankSum=1.92;SOR=0.832;VarDP=71 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,362 0/1:33,38:71:99:.:998,0,829:18,15,22,16 +chrX 3222872 . A G 739 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=10.83;BaseQRankSum=-1.947;DP=103;ExcessHet=0.0000;FS=2.009;MQ=60.00;MQRankSum=0;QD=10.83;ReadPosRankSum=1.538;SOR=0.418;VarDP=71 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,362 0/1:39,32:71:99:.:769,0,1093:24,15,17,15 +chrX 3223332 . T C 451 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=9.08;BaseQRankSum=0.026;DP=86;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=9.08;ReadPosRankSum=-1.111;SOR=0.656;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,362 0/1:33,20:53:99:.:481,0,918:13,20,8,12 +chrX 3223507 . T TAAAA 1380.97 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=24.91;BaseQRankSum=0.413;DP=91;ExcessHet=0.0000;FS=7.728;MQ=60.00;MQRankSum=0;QD=24.91;ReadPosRankSum=-0.894;SOR=0.594;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,362 0/1:21,36:57:99:.:1420,0,774:7,14,20,16 +chrX 3223543 . T C 893 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=15.91;BaseQRankSum=0.742;DP=89;ExcessHet=0.0000;FS=12.011;MQ=60.00;MQRankSum=0;QD=15.91;ReadPosRankSum=0.237;SOR=1.512;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,362 0/1:24,34:58:99:.:923,0,575:10,14,23,11 +chrX 3223632 . GA G 535.97 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=13.07;BaseQRankSum=0.066;DP=89;ExcessHet=0.0000;FS=2.614;MQ=60.00;MQRankSum=0;QD=13.07;ReadPosRankSum=1.294;SOR=0.517;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,362 0/1:17,27:44:99:.:575,0,291:7,10,14,13 +chrX 3223758 . C G 673 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=17.15;BaseQRankSum=0.72;DP=72;ExcessHet=0.0000;FS=9.551;MQ=59.60;MQRankSum=-0.75;QD=17.15;ReadPosRankSum=-2.126;SOR=0.861;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,362 0/1:16,25:41:99:.:703,0,393:11,5,10,15 +chrX 3223906 . C T 763 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=22.03;BaseQRankSum=1.003;DP=66;ExcessHet=0.0000;FS=3.018;MQ=58.69;MQRankSum=-0.268;QD=22.03;ReadPosRankSum=-1.334;SOR=1.270;VarDP=36 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:30:99:30:.:.:0,362 0|1:15,21:36:99:.:0|1:3223906_C_T:793,0,567:3223906:9,6,15,6 +chrX 3223910 . T C 729 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=21.08;BaseQRankSum=0.121;DP=66;ExcessHet=0.0000;FS=3.157;MQ=58.90;MQRankSum=0.16;QD=21.08;ReadPosRankSum=-0.724;SOR=1.356;VarDP=36 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:30:99:30:.:.:0,362 0|1:16,20:36:99:.:0|1:3223906_C_T:759,0,601:3223906:10,6,15,5 +chrX 3223919 . A G 582 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=19.13;BaseQRankSum=-0.968;DP=63;ExcessHet=0.0000;FS=0.000;MQ=57.76;MQRankSum=-0.033;QD=19.13;ReadPosRankSum=0.455;SOR=0.963;VarDP=32 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:30:99:30:.:.:0,362 0|1:16,16:32:99:.:0|1:3223906_C_T:612,0,603:3223906:10,6,11,5 +chrX 3223931 . C CA 130.97 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=6.80;BaseQRankSum=0.871;DP=78;ExcessHet=0.0000;FS=3.682;MQ=57.75;MQRankSum=1.417;QD=6.80;ReadPosRankSum=-1.849;SOR=0.715;VarDP=25 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,362 0/1:11,14:25:99:.:170,0,147:7,4,6,8 +chrX 3223963 . T C 645 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=15.00;BaseQRankSum=1.83;DP=76;ExcessHet=0.0000;FS=2.555;MQ=58.90;MQRankSum=-0.447;QD=15.00;ReadPosRankSum=-1.126;SOR=1.148;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,362 0/1:21,24:45:99:.:675,0,515:10,11,9,15 +chrX 3224201 . A AT 573.97 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=11.79;BaseQRankSum=0.191;DP=87;ExcessHet=0.0000;FS=2.356;MQ=60.00;MQRankSum=0;QD=11.79;ReadPosRankSum=-0.459;SOR=0.412;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,362 0/1:24,28:52:99:.:613,0,522:15,9,15,13 +chrX 3224334 . T C 773 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=13.16;BaseQRankSum=-0.111;DP=93;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.16;ReadPosRankSum=-1.725;SOR=0.756;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,362 0/1:30,31:61:99:.:803,0,765:15,15,15,16 +chrX 3224451 . T TA 786.97 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=17.57;BaseQRankSum=0;DP=80;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=17.57;ReadPosRankSum=0.664;SOR=0.819;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,362 0/1:21,26:47:99:.:826,0,627:7,14,8,18 +chrX 3224693 . G A 657 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=12.72;BaseQRankSum=1.311;DP=88;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=12.72;ReadPosRankSum=-0.312;SOR=0.767;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,362 0/1:29,25:54:99:.:687,0,786:18,11,16,9 +chrX 3225048 . T G 652 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=13.12;BaseQRankSum=-0.954;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.12;ReadPosRankSum=0.302;SOR=0.698;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,362 0/1:25,27:52:99:.:682,0,674:13,12,13,14 +chrX 3225062 . A G 640 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=13.14;BaseQRankSum=-1.642;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.14;ReadPosRankSum=0.208;SOR=0.612;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,362 0/1:24,27:51:99:.:670,0,640:11,13,13,14 +chrX 3225146 . C T 773 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=17.84;BaseQRankSum=-0.907;DP=77;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=17.84;ReadPosRankSum=0.297;SOR=0.547;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,362 0/1:16,29:45:99:.:803,0,401:9,7,15,14 +chrX 3225970 . T C 2165 . AC=2;AF=0.667;AN=3;AS_AltDP=72;AS_QD=20.51;BaseQRankSum=0.65;DP=108;ExcessHet=0.0000;FS=2.703;MQ=59.96;MQRankSum=0;QD=20.51;ReadPosRankSum=2.634;SOR=0.745;VarDP=107 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:1110,0:0,0,14,18 0/1:35,40:75:99:1085,0,885:19,16,19,21 +chrX 3226768 . C A 2976 . AC=3;AF=1.00;AN=3;AS_AltDP=91;AS_QD=32.67;BaseQRankSum=-0.274;DP=96;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=32.67;ReadPosRankSum=-1.377;SOR=0.338;VarDP=92 GT:AD:DP:GQ:PL:SB 1:1,33:34:99:1070,0:1,0,19,14 1/1:0,58:58:99:1936,174,0:0,0,32,26 +chrX 3227524 . A G 3084 . AC=3;AF=1.00;AN=3;AS_AltDP=94;AS_QD=33.13;DP=98;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.13;SOR=0.780;VarDP=94 GT:AD:DP:GQ:PL:SB 1:0,38:38:99:1320,0:0,0,17,21 1/1:0,56:56:99:1794,168,0:0,0,28,28 +chrX 3227655 . A G 3270 . AC=3;AF=1.00;AN=3;AS_AltDP=101;AS_QD=32.67;DP=103;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.67;SOR=0.839;VarDP=101 GT:AD:DP:GQ:PL:SB 1:0,35:35:99:1086,0:0,0,19,16 1/1:0,66:66:99:2214,198,0:0,0,35,31 +chrX 3227783 . T C 2909 . AC=3;AF=1.00;AN=3;AS_AltDP=94;AS_QD=31.27;DP=96;ExcessHet=0.0000;FS=0.000;MQ=59.94;QD=31.27;SOR=0.736;VarDP=94 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:921,0:0,0,15,15 1/1:0,64:64:99:2018,191,0:0,0,31,33 +chrX 3228076 . A G 3281 . AC=3;AF=1.00;AN=3;AS_AltDP=102;AS_QD=32.46;DP=104;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.46;SOR=0.952;VarDP=102 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:770,0:0,0,8,15 1/1:0,79:79:99:2541,237,0:0,0,37,42 +chrX 3228170 . CT C 708.97 . AC=2;AF=0.667;AN=3;AS_AltDP=35;AS_QD=17.81;BaseQRankSum=1.955;DP=76;ExcessHet=0.0000;FS=13.893;MQ=59.54;MQRankSum=-0.483;QD=17.81;ReadPosRankSum=-0.168;SOR=0.803;VarDP=42 GT:AD:DP:GQ:PL:SB 1:0,13:13:99:322,0:0,0,6,7 0/1:7,22:29:25:426,0,25:6,1,8,14 +chrX 3230047 . G A 3110 . AC=3;AF=1.00;AN=3;AS_AltDP=96;AS_QD=32.37;BaseQRankSum=-0.283;DP=98;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=32.37;ReadPosRankSum=-0.651;SOR=0.240;VarDP=97 GT:AD:DP:GQ:PL:SB 1:1,31:32:99:1003,0:0,1,15,16 1/1:0,65:65:99:2137,195,0:0,0,32,33 +chrX 3231007 . C T 2513 . AC=3;AF=1.00;AN=3;AS_AltDP=76;AS_QD=33.46;DP=79;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.46;SOR=0.746;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,22:22:99:755,0:0,0,13,9 1/1:0,54:54:99:1788,162,0:0,0,26,28 +chrX 3231317 . C T 2407 . AC=3;AF=1.00;AN=3;AS_AltDP=75;AS_QD=32.07;BaseQRankSum=-0.273;DP=79;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=32.07;ReadPosRankSum=-1.047;SOR=0.307;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:891,0:0,0,13,15 1/1:1,47:48:99:1546,110,0:0,1,21,26 +chrX 3232030 . T C 2862 . AC=3;AF=1.00;AN=3;AS_AltDP=89;AS_QD=32.49;DP=92;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.49;SOR=1.080;VarDP=89 GT:AD:DP:GQ:PL:SB 1:0,34:34:99:1132,0:0,0,18,16 1/1:0,55:55:99:1760,164,0:0,0,34,21 +chrX 3232574 . A AT,ATT 1625.97 . AC=3,0;AF=1.00,0.00;AN=3;AS_AltDP=69,4;AS_QD=24.13,29.19;DP=95;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=22.81;SOR=1.032;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,29,0:29:99:671,0,671:0,0,19,10 1/1:0,40,4:44:51:994,133,0,858,51,841:0,0,23,21 +chrX 3232708 . A G 3250 . AC=3;AF=1.00;AN=3;AS_AltDP=74;AS_QD=26.14;DP=76;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.32;SOR=0.864;VarDP=74 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,25:25:99:.:.:1095,0:.:0,0,10,15 1|1:0,49:49:99:0|1:3232708_A_G:2185,147,0:3232708:0,0,24,25 +chrX 3232715 . G T 3500 . AC=3;AF=1.00;AN=3;AS_AltDP=80;AS_QD=31.47;DP=80;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.13;SOR=0.850;VarDP=80 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,27:27:99:.:.:1165,0:.:0,0,11,16 1|1:0,53:53:99:0|1:3232708_A_G:2365,160,0:3232708:0,0,26,27 +chrX 3232740 . A C 3584 . AC=3;AF=1.00;AN=3;AS_AltDP=87;AS_QD=31.32;DP=91;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=41.54;SOR=0.863;VarDP=87 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,31:31:99:.:.:1237,0:.:0,0,13,18 1|1:0,56:56:99:0|1:3232708_A_G:2377,169,0:3232708:0,0,27,29 +chrX 3233045 . C T 2576 . AC=3;AF=1.00;AN=3;AS_AltDP=79;AS_QD=32.58;BaseQRankSum=-0.241;DP=81;ExcessHet=0.0000;FS=3.233;MQ=60.00;MQRankSum=0;QD=32.58;ReadPosRankSum=-1.401;SOR=0.426;VarDP=80 GT:AD:DP:GQ:PL:SB 1:1,25:26:99:804,0:1,0,11,14 1/1:0,54:54:99:1802,162,0:0,0,26,28 +chrX 3233673 . C T 2163 . AC=3;AF=1.00;AN=3;AS_AltDP=67;AS_QD=32.73;DP=69;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.73;SOR=0.723;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:734,0:0,0,14,9 1/1:0,44:44:99:1459,132,0:0,0,19,25 +chrX 3233775 . G A 2636 . AC=3;AF=1.00;AN=3;AS_AltDP=84;AS_QD=31.36;BaseQRankSum=2.16;DP=86;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=31.36;ReadPosRankSum=-0.681;SOR=0.263;VarDP=85 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:941,0:0,0,15,14 1/1:1,55:56:99:1725,158,0:0,1,25,30 +chrX 3233849 . G A 2459 . AC=3;AF=1.00;AN=3;AS_AltDP=75;AS_QD=32.75;BaseQRankSum=3.169;DP=79;ExcessHet=0.0000;FS=3.623;MQ=60.00;MQRankSum=0;QD=32.75;ReadPosRankSum=1.549;SOR=0.707;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:958,0:0,0,18,11 1/1:1,46:47:99:1531,131,0:0,1,25,21 +chrX 3235041 . G A 2794 . AC=3;AF=1.00;AN=3;AS_AltDP=84;AS_QD=33.62;DP=87;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.62;SOR=0.741;VarDP=84 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:898,0:0,0,14,13 1/1:0,57:57:99:1926,171,0:0,0,27,30 +chrX 3235168 . T G 2321 . AC=3;AF=1.00;AN=3;AS_AltDP=75;AS_QD=30.93;BaseQRankSum=1.777;DP=78;ExcessHet=0.0000;FS=3.245;MQ=60.00;MQRankSum=0;QD=30.93;ReadPosRankSum=-0.557;SOR=0.436;VarDP=76 GT:AD:DP:GQ:PL:SB 1:1,27:28:99:783,0:0,1,12,15 1/1:0,48:48:99:1568,143,0:0,0,28,20 +chrX 3235433 . T C 2633 . AC=3;AF=1.00;AN=3;AS_AltDP=81;AS_QD=32.88;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.88;SOR=0.821;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:859,0:0,0,10,15 1/1:0,56:56:99:1804,167,0:0,0,28,28 +chrX 3235680 . A T 2969 . AC=3;AF=1.00;AN=3;AS_AltDP=92;AS_QD=32.60;DP=96;ExcessHet=0.0000;FS=0.000;MQ=59.95;QD=32.60;SOR=0.737;VarDP=92 GT:AD:DP:GQ:PL:SB 1:0,36:36:99:1192,0:0,0,21,15 1/1:0,56:56:99:1807,168,0:0,0,26,30 +chrX 3236216 . A G 2968 . AC=3;AF=1.00;AN=3;AS_AltDP=90;AS_QD=33.31;DP=92;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.31;SOR=1.046;VarDP=90 GT:AD:DP:GQ:PL:SB 1:0,35:35:99:1161,0:0,0,20,15 1/1:0,55:55:99:1837,165,0:0,0,32,23 +chrX 3236711 . CT C 3880.97 . AC=3;AF=1.00;AN=3;AS_AltDP=105;AS_QD=31.56;DP=107;ExcessHet=0.0000;FS=0.000;MQ=59.74;QD=37.33;SOR=0.876;VarDP=105 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:972,0:0,0,9,17 1/1:0,79:79:99:2948,238,0:0,0,39,40 +chrX 3237100 . T G 2705 . AC=3;AF=1.00;AN=3;AS_AltDP=84;AS_QD=32.18;BaseQRankSum=2.645;DP=90;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=32.18;ReadPosRankSum=0.805;SOR=0.223;VarDP=85 GT:AD:DP:GQ:PL:SB 1:1,27:28:99:884,0:0,1,15,12 1/1:0,57:57:99:1851,170,0:0,0,27,30 +chrX 3237947 . C A 1986 . AC=3;AF=1.00;AN=3;AS_AltDP=60;AS_QD=33.60;DP=64;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.60;SOR=1.071;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:780,0:0,0,10,13 1/1:0,37:37:99:1236,111,0:0,0,15,22 +chrX 3238046 . C T 2503 . AC=3;AF=1.00;AN=3;AS_AltDP=76;AS_QD=33.33;DP=80;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.33;SOR=0.746;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:1092,0:0,0,15,17 1/1:0,44:44:99:1441,132,0:0,0,24,20 +chrX 3240082 . T A 2847 . AC=3;AF=1.00;AN=3;AS_AltDP=91;AS_QD=31.62;DP=95;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.62;SOR=0.715;VarDP=91 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:903,0:0,0,14,14 1/1:0,63:63:99:1974,189,0:0,0,31,32 +chrX 3240362 . T C 2355 . AC=3;AF=1.00;AN=3;AS_AltDP=72;AS_QD=33.13;DP=73;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.13;SOR=0.749;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,22:22:99:721,0:0,0,10,12 1/1:0,50:50:99:1664,150,0:0,0,25,25 +chrX 3240411 . G A 750 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=33.91;DP=76;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.91;SOR=1.179;VarDP=23 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,23:23:99:.:780,0:0,0,14,9 0/0:.:52:57:52:0,57,981 +chrX 3240574 . TTTCCTTCC TTTCC,T 1066.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=11,18;AS_QD=19.04,18.52;BaseQRankSum=-0.63;DP=61;ExcessHet=0.0000;FS=1.579;MQ=59.48;MQRankSum=1.156;QD=25.14;ReadPosRankSum=-0.445;SOR=0.322;VarDP=44 GT:AD:DP:GQ:PL:SB 1:0,11,0:11:99:495,0,495:0,0,2,9 0/2:15,0,18:33:99:611,656,1252,0,596,541:2,13,5,13 +chrX 3240680 . CTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTCTT C,CTCTT 358.97 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=0,7;AS_QD=9.13,17.30;BaseQRankSum=-1.152;DP=61;ExcessHet=0.0000;FS=4.365;MQ=58.52;MQRankSum=1.255;QD=17.30;ReadPosRankSum=0.238;SOR=1.785;VarDP=23 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:16:99:16:0,315,315 0/2:16,0,7:23:99:.:398,252,935,0,651,627:6,10,1,6 +chrX 3240686 . CTTTCTTTCTTTCTTTCTTTCT C,* 511.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=13,0;AS_QD=28.73,26.20;DP=66;ExcessHet=0.0000;FS=0.000;MQ=57.99;QD=42.38;SOR=0.963;VarDP=13 GT:AD:DP:GQ:PL:SB 1:0,13,0:13:99:551,0,485:0,0,4,5 0/2:16,0,7:23:99:398,360,1022,0,664,627:6,10,1,6 +chrX 3240690 . CTTTCTTTCTTTCTTTCT *,C 1144.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=11,13;AS_QD=0.00,25.44;DP=63;ExcessHet=0.0000;FS=0.000;MQ=58.41;QD=49.33;SOR=1.179;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,13,0:13:99:551,0,485:0,0,4,5 1/2:0,11,13:24:99:1184,486,447,470,0,408:0,0,9,15 +chrX 3240753 . T C 1090 . AC=3;AF=1.00;AN=3;AS_AltDP=29;AS_QD=29.46;DP=60;ExcessHet=0.0000;FS=0.000;MQ=57.80;QD=38.62;SOR=1.460;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,9:9:99:368,0:0,0,4,5 1/1:0,20:20:62:752,62,0:0,0,6,14 +chrX 3240759 . C T,CTCTT 2027 . AC=3,0;AF=1.00,0.00;AN=3;AS_AltDP=29,0;AS_QD=36.27,29.18;DP=61;ExcessHet=0.0000;FS=0.000;MQ=58.26;QD=70.93;SOR=1.460;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,9,0:9:99:702,0,485:0,0,4,5 1/1:0,20,0:20:81:1355,102,0,843,81,1125:0,0,6,14 +chrX 3240950 . G GA 3110.97 . AC=3;AF=1.00;AN=3;AS_AltDP=78;AS_QD=27.96;DP=81;ExcessHet=0.0000;FS=0.000;MQ=59.07;QD=40.38;SOR=0.914;VarDP=78 GT:AD:DP:GQ:PL:SB 1:0,18:18:99:727,0:0,0,8,10 1/1:0,60:60:99:2423,181,0:0,0,27,33 +chrX 3241640 . T A 2521 . AC=3;AF=1.00;AN=3;AS_AltDP=78;AS_QD=32.71;DP=79;ExcessHet=0.0000;FS=0.000;MQ=59.84;QD=32.71;SOR=1.108;VarDP=78 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:774,0:0,0,16,8 1/1:0,54:54:99:1777,162,0:0,0,30,24 +chrX 3242209 . T C 3058 . AC=3;AF=1.00;AN=3;AS_AltDP=97;AS_QD=31.84;DP=100;ExcessHet=0.0000;FS=0.000;MQ=59.78;QD=31.84;SOR=0.892;VarDP=97 GT:AD:DP:GQ:PL:SB 1:0,40:40:99:1269,0:0,0,20,20 1/1:0,57:57:99:1819,170,0:0,0,33,24 +chrX 3242357 . C G 4173 . AC=3;AF=1.00;AN=3;AS_AltDP=98;AS_QD=29.74;DP=99;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=42.89;SOR=1.361;VarDP=98 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,38:38:99:.:.:1576,0:.:0,0,13,25 1|1:0,60:60:99:0|1:3242357_C_G:2627,181,0:3242357:0,0,23,37 +chrX 3242370 . C T 4123 . AC=3;AF=1.00;AN=3;AS_AltDP=96;AS_QD=28.03;DP=98;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.26;SOR=1.190;VarDP=96 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,34:34:99:.:.:1467,0:.:0,0,13,21 1|1:0,62:62:99:0|1:3242357_C_G:2686,187,0:3242357:0,0,25,37 +chrX 3242497 . C A 2356 . AC=3;AF=1.00;AN=3;AS_AltDP=73;AS_QD=32.68;DP=74;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.68;SOR=0.898;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:743,0:0,0,11,12 1/1:0,50:50:99:1643,150,0:0,0,22,28 +chrX 3242756 . C A 2565 . AC=3;AF=1.00;AN=3;AS_AltDP=78;AS_QD=33.27;DP=79;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.27;SOR=1.040;VarDP=78 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:749,0:0,0,9,14 1/1:0,55:55:99:1846,165,0:0,0,24,31 +chrX 3242944 . A C 2963 . AC=3;AF=1.00;AN=3;AS_AltDP=91;AS_QD=32.89;DP=91;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.89;SOR=0.906;VarDP=91 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:824,0:0,0,15,10 1/1:0,66:66:99:2169,198,0:0,0,35,31 +chrX 3242987 . T C 2737 . AC=3;AF=1.00;AN=3;AS_AltDP=90;AS_QD=30.74;DP=90;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.74;SOR=0.784;VarDP=90 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:709,0:0,0,11,12 1/1:0,67:67:99:2058,200,0:0,0,32,35 +chrX 3243080 . A G 2468 . AC=3;AF=1.00;AN=3;AS_AltDP=77;AS_QD=32.44;DP=77;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.44;SOR=1.012;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:1022,0:0,0,14,17 1/1:0,46:46:99:1476,137,0:0,0,19,27 +chrX 3243352 . C T 2315 . AC=3;AF=1.00;AN=3;AS_AltDP=72;AS_QD=32.57;DP=73;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.57;SOR=0.749;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:878,0:0,0,11,17 1/1:0,44:44:99:1467,132,0:0,0,24,20 +chrX 3243636 . A AGAAG 1497.97 . AC=3;AF=1.00;AN=3;AS_AltDP=37;AS_QD=29.01;DP=42;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=41.54;SOR=1.609;VarDP=37 GT:AD:DP:GQ:PL:SB 1:0,13:13:99:541,0:0,0,10,3 1/1:0,24:24:72:996,72,0:0,0,15,9 +chrX 3243725 . GGAGGA G 1735.97 . AC=3;AF=1.00;AN=3;AS_AltDP=41;AS_QD=37.25;DP=52;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.29;SOR=0.843;VarDP=41 GT:AD:DP:GQ:PL:SB 1:0,11:11:99:470,0:0,0,2,9 1/1:0,30:30:90:1305,90,0:0,0,20,10 +chrX 3244427 . T C 2456 . AC=3;AF=1.00;AN=3;AS_AltDP=78;AS_QD=31.87;DP=80;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.87;SOR=0.855;VarDP=78 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:914,0:0,0,11,18 1/1:0,49:49:99:1572,146,0:0,0,25,24 +chrX 3245311 . C T 2916 . AC=3;AF=1.00;AN=3;AS_AltDP=91;AS_QD=32.37;DP=93;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.37;SOR=0.715;VarDP=91 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:847,0:0,0,17,10 1/1:0,64:64:99:2099,192,0:0,0,28,36 +chrX 3247027 . T C 2750 . AC=3;AF=1.00;AN=3;AS_AltDP=83;AS_QD=33.49;DP=84;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.49;SOR=0.717;VarDP=83 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:1043,0:0,0,15,15 1/1:0,53:53:99:1737,159,0:0,0,26,27 +chrX 3249061 . T C 2396 . AC=3;AF=1.00;AN=3;AS_AltDP=76;AS_QD=31.51;BaseQRankSum=-0.479;DP=79;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=31.51;ReadPosRankSum=0.616;SOR=0.293;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:1062,0:0,0,18,14 1/1:1,44:45:99:1364,100,0:1,0,23,21 +chrX 3249968 . G A 2620 . AC=3;AF=1.00;AN=3;AS_AltDP=80;AS_QD=33.13;DP=82;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.13;SOR=0.850;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:1102,0:0,0,15,17 1/1:0,48:48:99:1548,144,0:0,0,28,20 +chrX 3252169 . AT A 3431.97 . AC=3;AF=1.00;AN=3;AS_AltDP=94;AS_QD=28.81;BaseQRankSum=-0.231;DP=104;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=36.54;ReadPosRankSum=-1.549;SOR=0.371;VarDP=95 GT:AD:DP:GQ:PL:SB 1:1,27:28:99:972,0:1,0,17,10 1/1:0,67:67:99:2499,202,0:0,0,37,30 +chrX 3254114 . CAG C 1191.97 . AC=3;AF=1.00;AN=3;AS_AltDP=39;AS_QD=31.56;DP=64;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.56;SOR=1.096;VarDP=39 GT:AD:DP:GQ:PL:SB 1:0,17:17:99:538,0:0,0,7,10 1/1:0,22:22:67:693,67,0:0,0,9,13 +chrX 3254579 . G A 565 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=9.44;BaseQRankSum=0.265;DP=92;ExcessHet=0.0000;FS=3.542;MQ=60.00;MQRankSum=0;QD=9.44;ReadPosRankSum=-0.404;SOR=1.159;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:99:28:0,522 0/1:39,24:63:99:.:595,0,1061:17,22,8,16 +chrX 3255869 . G C 2123 . AC=3;AF=1.00;AN=3;AS_AltDP=66;AS_QD=32.13;BaseQRankSum=2.329;DP=71;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=32.13;ReadPosRankSum=-1.33;SOR=0.373;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:814,0:0,0,9,15 1/1:1,42:43:99:1339,118,0:0,1,19,23 +chrX 3259377 . T C 2838 . AC=3;AF=1.00;AN=3;AS_AltDP=86;AS_QD=33.35;DP=86;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.35;SOR=1.065;VarDP=86 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:899,0:0,0,15,12 1/1:0,59:59:99:1969,177,0:0,0,35,24 +chrX 3262230 . G GGT 264.97 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=10.48;BaseQRankSum=-1.142;DP=76;ExcessHet=0.0000;FS=5.649;MQ=60.00;MQRankSum=0;QD=10.48;ReadPosRankSum=0.349;SOR=1.184;VarDP=29 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,154 0/1:15,14:29:99:.:304,0,345:9,6,5,9 +chrX 3267520 . C A 483 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=11.15;BaseQRankSum=2.695;DP=76;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=11.15;ReadPosRankSum=-0.971;SOR=0.720;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,154 0/1:27,19:46:99:.:513,0,660:13,14,9,10 +chrX 3272026 . G A 560 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=13.11;BaseQRankSum=-0.379;DP=76;ExcessHet=0.0000;FS=1.154;MQ=60.00;MQRankSum=0;QD=13.11;ReadPosRankSum=0.239;SOR=0.982;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,154 0/1:23,22:45:99:.:590,0,617:11,12,9,13 +chrX 3279507 . TTTATTA T 1125.97 . AC=3;AF=1.00;AN=3;AS_AltDP=28;AS_QD=29.54;DP=48;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=41.61;SOR=0.693;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,14:14:99:599,0:0,0,8,6 1/1:0,14:14:42:566,42,0:0,0,6,8 +chrX 3289722 . C T 848 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=16.57;BaseQRankSum=0.944;DP=82;ExcessHet=0.0000;FS=0.000;MQ=59.78;MQRankSum=-0.804;QD=16.57;ReadPosRankSum=0.515;SOR=0.592;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:99:28:0,307 0/1:22,31:53:99:.:878,0,555:10,12,15,16 +chrX 3293307 . T G 2568 . AC=3;AF=1.00;AN=3;AS_AltDP=80;AS_QD=32.48;DP=83;ExcessHet=0.0000;FS=0.000;MQ=59.64;QD=32.48;SOR=1.096;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,35:35:99:1101,0:0,0,18,17 1/1:0,45:45:99:1497,135,0:0,0,29,16 +chrX 3294258 . A C 2039 . AC=3;AF=1.00;AN=3;AS_AltDP=62;AS_QD=33.37;DP=63;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.37;SOR=0.899;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,20:20:99:672,0:0,0,12,8 1/1:0,42:42:99:1397,126,0:0,0,22,20 +chrX 3294383 . C G 2393 . AC=3;AF=1.00;AN=3;AS_AltDP=80;AS_QD=30.29;DP=82;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.29;SOR=0.796;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:748,0:0,0,13,11 1/1:0,56:56:99:1675,166,0:0,0,29,27 +chrX 3294540 . T A 2571 . AC=3;AF=1.00;AN=3;AS_AltDP=78;AS_QD=33.35;DP=79;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.35;SOR=0.976;VarDP=78 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:968,0:0,0,9,20 1/1:0,49:49:99:1633,147,0:0,0,25,24 +chrX 3294782 . G A 2696 . AC=3;AF=1.00;AN=3;AS_AltDP=83;AS_QD=32.84;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.84;SOR=0.928;VarDP=83 GT:AD:DP:GQ:PL:SB 1:0,21:21:99:673,0:0,0,11,10 1/1:0,62:62:99:2053,186,0:0,0,35,27 +chrX 3294892 . A G 2302 . AC=3;AF=1.00;AN=3;AS_AltDP=72;AS_QD=32.39;DP=73;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.39;SOR=0.934;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:789,0:0,0,14,10 1/1:0,48:48:99:1543,144,0:0,0,26,22 +chrX 3295019 . A G 2790 . AC=3;AF=1.00;AN=3;AS_AltDP=95;AS_QD=29.68;DP=99;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=29.68;SOR=0.848;VarDP=95 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:828,0:0,0,17,10 1/1:0,68:68:99:1992,202,0:0,0,34,34 +chrX 3295475 . G T 3155 . AC=3;AF=1.00;AN=3;AS_AltDP=99;AS_QD=32.17;DP=99;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.17;SOR=0.888;VarDP=99 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:1013,0:0,0,17,13 1/1:0,69:69:99:2172,206,0:0,0,37,32 +chrX 3295541 . G A 3180 . AC=3;AF=1.00;AN=3;AS_AltDP=98;AS_QD=32.76;DP=102;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.76;SOR=0.914;VarDP=98 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:938,0:0,0,14,15 1/1:0,69:69:99:2272,207,0:0,0,30,39 +chrX 3295762 . C T 2452 . AC=3;AF=1.00;AN=3;AS_AltDP=72;AS_QD=34.47;DP=75;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=34.47;SOR=0.749;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:849,0:0,0,13,12 1/1:0,47:47:99:1633,141,0:0,0,24,23 +chrX 3295870 . A G 2737 . AC=3;AF=1.00;AN=3;AS_AltDP=87;AS_QD=31.80;DP=91;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.80;SOR=1.090;VarDP=87 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:913,0:0,0,17,12 1/1:0,58:58:99:1854,173,0:0,0,34,24 +chrX 3296135 . C A 2619 . AC=3;AF=1.00;AN=3;AS_AltDP=82;AS_QD=31.92;BaseQRankSum=1.853;DP=85;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=31.92;ReadPosRankSum=-0.419;SOR=0.339;VarDP=83 GT:AD:DP:GQ:PL:SB 1:1,28:29:99:889,0:0,1,11,17 1/1:0,54:54:99:1760,162,0:0,0,25,29 +chrX 3296271 . T G 2976 . AC=3;AF=1.00;AN=3;AS_AltDP=93;AS_QD=32.32;DP=94;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.32;SOR=0.953;VarDP=93 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:873,0:0,0,13,14 1/1:0,66:66:99:2133,198,0:0,0,39,27 +chrX 3296772 . T TTTTA 3610.97 . AC=3;AF=1.00;AN=3;AS_AltDP=83;AS_QD=29.81;DP=89;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.98;SOR=0.818;VarDP=83 GT:AD:DP:GQ:PL:SB 1:0,22:22:99:967,0:0,0,14,8 1/1:0,61:61:99:2683,183,0:0,0,30,31 +chrX 3296914 . T A 2688 . AC=3;AF=1.00;AN=3;AS_AltDP=82;AS_QD=33.15;DP=87;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.15;SOR=0.961;VarDP=82 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:979,0:0,0,18,12 1/1:0,52:52:99:1739,156,0:0,0,28,24 +chrX 3296925 . A G 2738 . AC=3;AF=1.00;AN=3;AS_AltDP=84;AS_QD=32.95;DP=85;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.95;SOR=0.791;VarDP=84 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:981,0:0,0,16,14 1/1:0,54:54:99:1787,162,0:0,0,28,26 +chrX 3297359 . G A 2607 . AC=3;AF=1.00;AN=3;AS_AltDP=82;AS_QD=32.16;DP=84;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.16;SOR=0.961;VarDP=82 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:986,0:0,0,16,15 1/1:0,51:51:99:1651,153,0:0,0,20,31 +chrX 3297408 . T A 2679 . AC=3;AF=1.00;AN=3;AS_AltDP=81;AS_QD=33.44;DP=84;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.44;SOR=0.821;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:923,0:0,0,13,15 1/1:0,53:53:99:1786,159,0:0,0,25,28 +chrX 3297450 . A T 2879 . AC=3;AF=1.00;AN=3;AS_AltDP=87;AS_QD=33.44;DP=90;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.44;SOR=0.863;VarDP=87 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:849,0:0,0,11,14 1/1:0,62:62:99:2060,186,0:0,0,36,26 +chrX 3297611 . T C 2093 . AC=3;AF=1.00;AN=3;AS_AltDP=67;AS_QD=31.69;DP=71;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.69;SOR=0.917;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,14:14:99:431,0:0,0,8,6 1/1:0,53:53:99:1692,158,0:0,0,22,31 +chrX 3297784 . A G 2345 . AC=3;AF=1.00;AN=3;AS_AltDP=76;AS_QD=31.25;DP=81;ExcessHet=0.0000;FS=0.000;MQ=59.37;QD=31.25;SOR=0.801;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,14:14:99:457,0:0,0,5,9 1/1:0,62:62:99:1918,186,0:0,0,31,31 +chrX 3297919 . A G 2385 . AC=3;AF=1.00;AN=3;AS_AltDP=72;AS_QD=33.54;DP=74;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.54;SOR=0.749;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,15:15:99:521,0:0,0,8,7 1/1:0,57:57:99:1894,171,0:0,0,27,30 +chrX 3297974 . T C 2590 . AC=3;AF=1.00;AN=3;AS_AltDP=82;AS_QD=31.95;DP=87;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.95;SOR=0.902;VarDP=82 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:824,0:0,0,13,12 1/1:0,57:57:99:1796,171,0:0,0,24,33 +chrX 3298019 . C G 2624 . AC=3;AF=1.00;AN=3;AS_AltDP=82;AS_QD=32.37;DP=85;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.37;SOR=0.793;VarDP=82 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:863,0:0,0,14,12 1/1:0,56:56:99:1791,168,0:0,0,25,31 +chrX 3298076 . A G 2778 . AC=3;AF=1.00;AN=3;AS_AltDP=84;AS_QD=33.43;DP=84;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.43;SOR=0.843;VarDP=84 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:823,0:0,0,14,10 1/1:0,60:60:99:1985,180,0:0,0,31,29 +chrX 3298181 . C T 2703 . AC=3;AF=1.00;AN=3;AS_AltDP=86;AS_QD=31.41;BaseQRankSum=-0.424;DP=87;ExcessHet=0.0000;FS=3.061;MQ=60.00;MQRankSum=0;QD=31.41;ReadPosRankSum=0.479;SOR=0.297;VarDP=87 GT:AD:DP:GQ:PL:SB 1:1,28:29:99:863,0:1,0,11,17 1/1:0,58:58:99:1870,174,0:0,0,31,27 +chrX 3298216 . T C 2684 . AC=3;AF=1.00;AN=3;AS_AltDP=85;AS_QD=31.56;BaseQRankSum=-0.364;DP=89;ExcessHet=0.0000;FS=3.112;MQ=60.00;MQRankSum=0;QD=31.56;ReadPosRankSum=1.376;SOR=0.335;VarDP=86 GT:AD:DP:GQ:PL:SB 1:1,28:29:99:873,0:1,0,10,18 1/1:0,57:57:99:1841,170,0:0,0,31,26 +chrX 3298268 . C A 2922 . AC=3;AF=1.00;AN=3;AS_AltDP=88;AS_QD=33.55;DP=92;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.55;SOR=0.941;VarDP=88 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:829,0:0,0,12,13 1/1:0,63:63:99:2123,189,0:0,0,37,26 +chrX 3298285 . A G 2825 . AC=3;AF=1.00;AN=3;AS_AltDP=87;AS_QD=32.44;BaseQRankSum=2.038;DP=88;ExcessHet=0.0000;FS=3.317;MQ=60.00;MQRankSum=0;QD=32.44;ReadPosRankSum=-1.093;SOR=0.483;VarDP=88 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:776,0:0,0,9,14 1/1:1,64:65:99:2079,171,0:0,1,38,26 +chrX 3298524 . C T 3006 . AC=3;AF=1.00;AN=3;AS_AltDP=91;AS_QD=33.36;DP=92;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.36;SOR=0.807;VarDP=91 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:794,0:0,0,14,10 1/1:0,67:67:99:2242,201,0:0,0,34,33 +chrX 3298682 . A G 2496 . AC=3;AF=1.00;AN=3;AS_AltDP=77;AS_QD=32.81;DP=84;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.81;SOR=0.948;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:1057,0:0,0,16,17 1/1:0,44:44:99:1469,132,0:0,0,18,26 +chrX 3298867 . G A 2472 . AC=3;AF=1.00;AN=3;AS_AltDP=74;AS_QD=33.81;DP=75;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.81;SOR=1.209;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:849,0:0,0,15,10 1/1:0,49:49:99:1653,147,0:0,0,30,19 +chrX 3299138 . A T 4194 . AC=3;AF=1.00;AN=3;AS_AltDP=94;AS_QD=27.61;DP=95;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.94;SOR=0.780;VarDP=94 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,37:37:99:.:.:1660,0:.:0,0,17,20 1|1:0,57:57:99:0|1:3299138_A_T:2564,172,0:3299138:0,0,28,29 +chrX 3299139 . G A 4194 . AC=3;AF=1.00;AN=3;AS_AltDP=94;AS_QD=22.42;DP=95;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.94;SOR=0.780;VarDP=94 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,37:37:99:.:.:1660,0:.:0,0,17,20 1|1:0,57:57:99:0|1:3299138_A_T:2564,172,0:3299138:0,0,28,29 +chrX 3299911 . G GGA,GGAGA,GGAGAGA 2487.97 . AC=2,0,1;AF=0.667,0.00,0.333;AN=3;AS_AltDP=45,1,23;AS_QD=29.23,28.86,30.63;DP=81;ExcessHet=0.0000;FS=0.000;MQ=59.79;QD=36.62;SOR=0.781;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,23,0,0:23:99:774,0,774,774:0,0,9,14 1/3:0,22,1,23:46:99:1753,979,898,1401,719,1326,744,0,702,852:0,0,27,19 +chrX 3299964 . T C 2349 . AC=3;AF=1.00;AN=3;AS_AltDP=76;AS_QD=31.30;DP=79;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.30;SOR=0.801;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:937,0:0,0,11,18 1/1:0,47:47:99:1442,140,0:0,0,29,18 +chrX 3300311 . A G 2595 . AC=3;AF=1.00;AN=3;AS_AltDP=81;AS_QD=32.41;DP=84;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.41;SOR=0.995;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:1007,0:0,0,18,13 1/1:0,50:50:99:1618,149,0:0,0,28,22 +chrX 3300329 . G T 2838 . AC=3;AF=1.00;AN=3;AS_AltDP=86;AS_QD=33.35;DP=90;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.35;SOR=1.065;VarDP=86 GT:AD:DP:GQ:PL:SB 1:0,34:34:99:1142,0:0,0,21,13 1/1:0,52:52:99:1726,156,0:0,0,29,23 +chrX 3300567 . G A 2404 . AC=3;AF=1.00;AN=3;AS_AltDP=71;AS_QD=34.28;DP=72;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=34.28;SOR=0.721;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:1007,0:0,0,16,13 1/1:0,42:42:99:1427,126,0:0,0,19,23 +chrX 3300704 . G A 2812 . AC=3;AF=1.00;AN=3;AS_AltDP=88;AS_QD=32.30;DP=90;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.30;SOR=0.836;VarDP=88 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:1042,0:0,0,12,21 1/1:0,55:55:99:1800,164,0:0,0,29,26 +chrX 3300766 . T C 3902 . AC=3;AF=1.00;AN=3;AS_AltDP=89;AS_QD=28.37;DP=92;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.18;SOR=0.965;VarDP=89 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,37:37:99:.:.:1614,0:.:0,0,15,22 1|1:0,52:52:99:0|1:3300766_T_C:2318,157,0:3300766:0,0,24,28 +chrX 3300773 . T C 3913 . AC=3;AF=1.00;AN=3;AS_AltDP=89;AS_QD=28.87;DP=89;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.30;SOR=1.022;VarDP=89 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,35:35:99:.:.:1565,0:.:0,0,13,22 1|1:0,54:54:99:0|1:3300766_T_C:2378,163,0:3300766:0,0,25,29 +chrX 3301000 . A C 2462 . AC=3;AF=1.00;AN=3;AS_AltDP=77;AS_QD=32.36;DP=80;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.36;SOR=0.887;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,20:20:99:665,0:0,0,7,13 1/1:0,57:57:99:1827,170,0:0,0,35,22 +chrX 3301088 . G A 2577 . AC=3;AF=1.00;AN=3;AS_AltDP=78;AS_QD=33.42;DP=79;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.42;SOR=0.855;VarDP=78 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:790,0:0,0,8,15 1/1:0,55:55:99:1817,165,0:0,0,28,27 +chrX 3301235 . A C 2553 . AC=3;AF=1.00;AN=3;AS_AltDP=80;AS_QD=32.29;DP=81;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.29;SOR=0.743;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:808,0:0,0,15,11 1/1:0,54:54:99:1775,162,0:0,0,26,28 +chrX 3301302 . T C 2509 . AC=3;AF=1.00;AN=3;AS_AltDP=78;AS_QD=32.14;BaseQRankSum=-0.514;DP=79;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=32.14;ReadPosRankSum=-0.112;SOR=0.410;VarDP=79 GT:AD:DP:GQ:PL:SB 1:1,30:31:99:912,0:1,0,22,8 1/1:0,48:48:99:1627,144,0:0,0,24,24 +chrX 3301496 . G A 2946 . AC=3;AF=1.00;AN=3;AS_AltDP=69;AS_QD=29.07;BaseQRankSum=-0.141;DP=70;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=42.51;ReadPosRankSum=-1.541;SOR=0.316;VarDP=70 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,26:27:99:.:.:1061,0:.:0,1,12,14 1|1:0,43:43:99:0|1:3301496_G_A:1915,129,0:3301496:0,0,19,24 +chrX 3301503 . G A 2913 . AC=3;AF=1.00;AN=3;AS_AltDP=68;AS_QD=28.80;BaseQRankSum=-0.151;DP=69;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=42.65;ReadPosRankSum=-1.156;SOR=0.302;VarDP=69 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,25:26:99:.:.:1028,0:.:0,1,12,13 1|1:0,43:43:99:0|1:3301496_G_A:1915,129,0:3301496:0,0,19,24 +chrX 3301746 . G T 3518 . AC=3;AF=1.00;AN=3;AS_AltDP=80;AS_QD=32.97;DP=82;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.35;SOR=1.310;VarDP=80 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,26:26:99:.:.:1150,0:.:0,0,18,8 1|1:0,54:54:99:0|1:3301746_G_T:2398,163,0:3301746:0,0,32,22 +chrX 3301750 . C T 3469 . AC=3;AF=1.00;AN=3;AS_AltDP=78;AS_QD=32.09;DP=79;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.86;SOR=1.252;VarDP=78 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,25:25:99:.:.:1125,0:.:0,0,17,8 1|1:0,53:53:99:0|1:3301746_G_T:2374,160,0:3301746:0,0,31,22 +chrX 3301764 . G A 2421 . AC=3;AF=1.00;AN=3;AS_AltDP=74;AS_QD=33.12;DP=78;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.12;SOR=1.288;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:824,0:0,0,16,8 1/1:0,50:50:99:1627,149,0:0,0,30,20 +chrX 3301815 . C CT 2069.97 . AC=3;AF=1.00;AN=3;AS_AltDP=75;AS_QD=28.12;DP=84;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=28.12;SOR=0.774;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:711,0:0,0,16,9 1/1:0,50:50:99:1398,150,0:0,0,23,27 +chrX 3301905 . C T 2316 . AC=3;AF=1.00;AN=3;AS_AltDP=74;AS_QD=31.70;DP=75;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.70;SOR=1.134;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:878,0:0,0,9,18 1/1:0,47:47:99:1468,140,0:0,0,21,26 +chrX 3302058 . A G 2346 . AC=3;AF=1.00;AN=3;AS_AltDP=75;AS_QD=31.68;DP=77;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.68;SOR=0.955;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:888,0:0,0,14,14 1/1:0,47:47:99:1488,141,0:0,0,28,19 +chrX 3302630 . C G 2888 . AC=3;AF=1.00;AN=3;AS_AltDP=91;AS_QD=32.07;DP=95;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.07;SOR=0.906;VarDP=91 GT:AD:DP:GQ:PL:SB 1:0,44:44:99:1359,0:0,0,20,24 1/1:0,47:47:99:1559,141,0:0,0,21,26 +chrX 3302678 . G A 2978 . AC=3;AF=1.00;AN=3;AS_AltDP=90;AS_QD=33.42;DP=91;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.42;SOR=0.784;VarDP=90 GT:AD:DP:GQ:PL:SB 1:0,37:37:99:1226,0:0,0,14,23 1/1:0,53:53:99:1782,159,0:0,0,29,24 +chrX 3302702 . A G 2906 . AC=3;AF=1.00;AN=3;AS_AltDP=89;AS_QD=32.99;DP=93;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.99;SOR=0.809;VarDP=89 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:1051,0:0,0,11,22 1/1:0,56:56:99:1885,168,0:0,0,31,25 +chrX 3302880 . T C 2913 . AC=3;AF=1.00;AN=3;AS_AltDP=91;AS_QD=32.34;DP=92;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.34;SOR=0.760;VarDP=91 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:799,0:0,0,11,14 1/1:0,66:66:99:2144,198,0:0,0,33,33 +chrX 3303016 . T C 2253 . AC=3;AF=1.00;AN=3;AS_AltDP=70;AS_QD=32.61;DP=74;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.61;SOR=0.811;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:803,0:0,0,15,11 1/1:0,44:44:99:1480,132,0:0,0,18,26 +chrX 3303067 . CAGGCTTCTCACTG C 3326.97 . AC=3;AF=1.00;AN=3;AS_AltDP=76;AS_QD=25.50;BaseQRankSum=-0.495;DP=81;ExcessHet=0.0000;FS=3.424;MQ=60.00;MQRankSum=0;QD=43.71;ReadPosRankSum=0.949;SOR=0.565;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:1080,0:0,0,12,12 1/1:1,52:53:99:2286,115,0:1,0,22,30 +chrX 3303097 . A C 2409 . AC=3;AF=1.00;AN=3;AS_AltDP=81;AS_QD=29.74;BaseQRankSum=-0.811;DP=84;ExcessHet=0.0000;FS=3.697;MQ=60.00;MQRankSum=0;QD=29.74;ReadPosRankSum=-0.315;SOR=0.757;VarDP=82 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:827,0:0,0,12,15 1/1:1,54:55:99:1612,130,0:1,0,22,32 +chrX 3303200 . C T 2242 . AC=3;AF=1.00;AN=3;AS_AltDP=69;AS_QD=32.00;BaseQRankSum=1.953;DP=73;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=32.00;ReadPosRankSum=1.311;SOR=0.844;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,20:20:99:650,0:0,0,9,11 1/1:2,49:51:99:1622,109,0:1,1,28,21 +chrX 3303265 . T C 2423 . AC=3;AF=1.00;AN=3;AS_AltDP=77;AS_QD=31.45;BaseQRankSum=-0.584;DP=81;ExcessHet=0.0000;FS=3.358;MQ=60.00;MQRankSum=0;QD=31.45;ReadPosRankSum=-1.21;SOR=0.517;VarDP=78 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:847,0:0,0,13,12 1/1:1,52:53:99:1606,124,0:0,1,29,23 +chrX 3303394 . CAA C 563.97 . AC=3;AF=1.00;AN=3;AS_AltDP=27;AS_QD=17.74;DP=66;ExcessHet=0.0000;FS=38.320;MQ=58.41;MQRankSum=0.842;QD=17.74;SOR=2.689;VarDP=34 GT:AD:DP:GQ:PL:SB 1:4,6:10:79:79,0:0,4,4,2 1/1:3,21:24:13:524,13,0:0,3,18,3 +chrX 3303440 . A G 2398 . AC=3;AF=1.00;AN=3;AS_AltDP=73;AS_QD=33.26;DP=78;ExcessHet=0.0000;FS=0.000;MQ=59.25;QD=33.26;SOR=0.898;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,20:20:99:674,0:0,0,10,10 1/1:0,53:53:99:1754,159,0:0,0,30,23 +chrX 3303559 . A G 3482 . AC=3;AF=1.00;AN=3;AS_AltDP=109;AS_QD=32.22;DP=109;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.22;SOR=0.956;VarDP=109 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:967,0:0,0,13,18 1/1:0,78:78:99:2545,233,0:0,0,35,43 +chrX 3303783 . G A 2101 . AC=3;AF=1.00;AN=3;AS_AltDP=68;AS_QD=30.44;BaseQRankSum=2.601;DP=71;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=30.44;ReadPosRankSum=0.874;SOR=1.098;VarDP=70 GT:AD:DP:GQ:PL:SB 1:2,28:30:99:866,0:1,1,19,9 1/1:0,40:40:99:1265,119,0:0,0,21,19 +chrX 3303896 . T C 2371 . AC=3;AF=1.00;AN=3;AS_AltDP=72;AS_QD=33.35;DP=77;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.35;SOR=1.002;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:1052,0:0,0,19,13 1/1:0,40:40:99:1349,120,0:0,0,22,18 +chrX 3304088 . G A 2185 . AC=3;AF=1.00;AN=3;AS_AltDP=69;AS_QD=32.10;DP=71;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.10;SOR=0.980;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:897,0:0,0,8,19 1/1:0,42:42:99:1318,125,0:0,0,22,20 +chrX 3304107 . C G 2198 . AC=3;AF=1.00;AN=3;AS_AltDP=68;AS_QD=32.76;DP=68;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.76;SOR=1.098;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:958,0:0,0,9,20 1/1:0,39:39:99:1270,117,0:0,0,19,20 +chrX 3304130 . C A,CAA 2104 . AC=3,0;AF=1.00,0.00;AN=3;AS_AltDP=57,0;AS_QD=30.92,34.84;DP=65;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=37.44;SOR=0.960;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:872,0,951:0,0,8,16 1/1:0,33,0:33:99:1262,111,0,1201,102,1335:0,0,17,16 +chrX 3304191 . G A 2290 . AC=3;AF=1.00;AN=3;AS_AltDP=72;AS_QD=32.22;DP=76;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.22;SOR=0.749;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,19:19:99:640,0:0,0,6,13 1/1:0,53:53:99:1680,158,0:0,0,31,22 +chrX 3304251 . T C 2515 . AC=3;AF=1.00;AN=3;AS_AltDP=77;AS_QD=33.05;DP=81;ExcessHet=0.0000;FS=0.000;MQ=59.96;QD=33.05;SOR=1.012;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,20:20:99:644,0:0,0,8,12 1/1:0,57:57:99:1901,171,0:0,0,36,21 +chrX 3304397 . A G 2390 . AC=3;AF=1.00;AN=3;AS_AltDP=74;AS_QD=32.70;DP=75;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.70;SOR=0.992;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,20:20:99:650,0:0,0,10,10 1/1:0,54:54:99:1770,162,0:0,0,32,22 +chrX 3304460 . T C 2444 . AC=3;AF=1.00;AN=3;AS_AltDP=81;AS_QD=30.54;DP=82;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.54;SOR=0.876;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,18:18:99:576,0:0,0,10,8 1/1:0,63:63:99:1898,188,0:0,0,34,29 +chrX 3304506 . T G 2554 . AC=3;AF=1.00;AN=3;AS_AltDP=81;AS_QD=31.90;DP=83;ExcessHet=0.0000;FS=0.000;MQ=59.92;QD=31.90;SOR=0.718;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,17:17:99:591,0:0,0,9,8 1/1:0,64:64:99:1993,191,0:0,0,31,33 +chrX 3305115 . G A 2718 . AC=3;AF=1.00;AN=3;AS_AltDP=85;AS_QD=32.33;DP=86;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.33;SOR=0.922;VarDP=85 GT:AD:DP:GQ:PL:SB 1:0,34:34:99:1121,0:0,0,20,14 1/1:0,51:51:99:1627,153,0:0,0,27,24 +chrX 3305452 . C T 2613 . AC=3;AF=1.00;AN=3;AS_AltDP=81;AS_QD=32.63;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.63;SOR=0.768;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:809,0:0,0,14,11 1/1:0,56:56:99:1834,167,0:0,0,25,31 +chrX 3305602 . A G 2557 . AC=3;AF=1.00;AN=3;AS_AltDP=77;AS_QD=33.60;DP=78;ExcessHet=0.0000;FS=0.000;MQ=59.92;QD=33.60;SOR=1.150;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:1022,0:0,0,17,13 1/1:0,47:47:99:1565,141,0:0,0,29,18 +chrX 3305684 . T C 2910 . AC=3;AF=1.00;AN=3;AS_AltDP=92;AS_QD=31.96;DP=92;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.96;SOR=1.038;VarDP=92 GT:AD:DP:GQ:PL:SB 1:0,35:35:99:1080,0:0,0,19,16 1/1:0,57:57:99:1860,170,0:0,0,34,23 +chrX 3305828 . CT C 3849.97 . AC=3;AF=1.00;AN=3;AS_AltDP=113;AS_QD=34.42;DP=119;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=34.42;SOR=0.862;VarDP=113 GT:AD:DP:GQ:PL:SB 1:0,35:35:99:1203,0:0,0,17,18 1/1:0,78:78:99:2686,235,0:0,0,35,43 +chrX 3305845 . C T 3509 . AC=3;AF=1.00;AN=3;AS_AltDP=111;AS_QD=31.88;DP=115;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.88;SOR=0.951;VarDP=111 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:1047,0:0,0,15,18 1/1:0,78:78:99:2492,234,0:0,0,34,44 +chrX 3306164 . G A 2398 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=28.56;BaseQRankSum=-1.413;DP=86;ExcessHet=0.0000;FS=0.872;MQ=60.00;MQRankSum=0;QD=28.56;ReadPosRankSum=-0.463;SOR=0.833;VarDP=85 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,32:32:99:.:.:1440,0:.:0,0,12,20 0|1:27,26:53:99:0|1:3306164_G_A:988,0,1034:3306164:13,14,14,12 +chrX 3306165 . G A 2398 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=28.56;BaseQRankSum=-1.458;DP=87;ExcessHet=0.0000;FS=0.872;MQ=60.00;MQRankSum=0;QD=28.56;ReadPosRankSum=-0.383;SOR=0.833;VarDP=85 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,32:32:99:.:.:1440,0:.:0,0,12,20 0|1:27,26:53:99:0|1:3306164_G_A:988,0,1034:3306164:13,14,14,12 +chrX 3306179 . C A 1743 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=20.15;BaseQRankSum=-1.193;DP=91;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=20.15;ReadPosRankSum=0.857;SOR=0.756;VarDP=88 GT:AD:DP:GQ:PL:SB 1:0,34:34:99:1092,0:0,0,14,20 0/1:28,26:54:99:681,0,780:13,15,13,13 +chrX 3306216 . A G 1804 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=19.93;BaseQRankSum=0.293;DP=97;ExcessHet=0.0000;FS=0.853;MQ=60.00;MQRankSum=0;QD=19.93;ReadPosRankSum=0.937;SOR=0.570;VarDP=92 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:1008,0:0,0,10,20 0/1:30,32:62:99:826,0,777:11,19,15,17 +chrX 3306839 . CATCTATCT C 565.97 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=25.62;DP=79;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.21;SOR=2.303;VarDP=14 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,14:14:99:.:605,0:0,0,3,11 0/0:.:61:72:61:0,72,1420 +chrX 3306946 . TC T 1697.97 . AC=2;AF=0.667;AN=3;AS_AltDP=42;AS_QD=26.72;BaseQRankSum=0.789;DP=66;ExcessHet=0.0000;FS=0.000;MQ=59.69;MQRankSum=-0.145;QD=26.72;ReadPosRankSum=0.808;SOR=0.704;VarDP=65 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,25:25:99:.:.:1106,0:.:0,0,13,12 0|1:23,17:40:99:0|1:3306946_TC_T:631,0,901:3306946:11,12,7,10 +chrX 3306958 . C CA 1840.97 . AC=2;AF=0.667;AN=3;AS_AltDP=45;AS_QD=28.48;BaseQRankSum=1.547;DP=67;ExcessHet=0.0000;FS=0.000;MQ=59.40;MQRankSum=-0.507;QD=28.48;ReadPosRankSum=1.879;SOR=0.828;VarDP=66 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,24:24:99:.:.:1071,0:.:0,0,12,12 0|1:21,21:42:99:0|1:3306946_TC_T:809,0,814:3306946:10,11,8,13 +chrX 3306959 . T TCTATC 1885.97 . AC=2;AF=0.667;AN=3;AS_AltDP=46;AS_QD=28.73;BaseQRankSum=0.906;DP=68;ExcessHet=0.0000;FS=0.000;MQ=59.01;MQRankSum=-0.507;QD=28.73;ReadPosRankSum=1.111;SOR=0.776;VarDP=67 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,25:25:99:.:.:1116,0:.:0,0,13,12 0|1:21,21:42:99:0|1:3306946_TC_T:809,0,819:3306946:10,11,8,13 +chrX 3306962 . G C,GTATC 2386 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=42,15;AS_QD=28.13,26.87;DP=65;ExcessHet=0.0000;FS=0.000;MQ=58.97;QD=42.39;SOR=0.800;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,22,0:22:99:990,0,990:0,0,12,10 1/2:0,20,15:35:99:1426,618,853,808,0,763:0,0,15,20 +chrX 3306974 . C G 1826 . AC=2;AF=0.667;AN=3;AS_AltDP=46;AS_QD=26.51;BaseQRankSum=-0.865;DP=72;ExcessHet=0.0000;FS=0.000;MQ=58.98;MQRankSum=-0.552;QD=26.51;ReadPosRankSum=0.17;SOR=0.625;VarDP=70 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,23:23:99:.:.:1014,0:.:0,0,13,10 0|1:24,23:47:99:0|1:3306946_TC_T:842,0,887:3306946:11,13,9,14 +chrX 3307023 . CTATCTATCTATG C 804.97 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=25.22;DP=65;ExcessHet=0.0000;FS=0.000;MQ=57.72;QD=44.42;SOR=0.793;VarDP=19 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,19:19:99:.:844,0:0,0,10,9 0/0:.:42:69:42:0,69,1035 +chrX 3307035 . GTATC *,G 760.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=0,21;AS_QD=0.00,21.05;BaseQRankSum=-0.111;DP=62;ExcessHet=0.0000;FS=0.000;MQ=59.70;MQRankSum=0;QD=21.05;ReadPosRankSum=1.621;SOR=0.892;VarDP=38 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,19,0:19:99:.:.:844,0,844:.:0,0,10,9 0|2:17,0,21:38:99:0|1:3307035_GTATC_G:800,586,1253,0,703,640:3307035:8,9,1,6 +chrX 3307055 . GTATCTATGTATC G 184.97 . AC=1;AF=0.333;AN=3;AS_AltDP=7;AS_QD=10.18;BaseQRankSum=0.369;DP=73;ExcessHet=0.0000;FS=7.829;MQ=59.75;MQRankSum=0;QD=10.18;ReadPosRankSum=1.481;SOR=2.568;VarDP=22 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:27:99:27:.:.:0,268 0|1:15,7:22:99:.:0|1:3307035_GTATC_G:224,0,608:3307035:8,7,1,6 +chrX 3307063 . GTATC *,G 872.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=7,7;AS_QD=0.00,25.59;DP=71;ExcessHet=0.0000;FS=0.000;MQ=59.74;QD=65.14;SOR=1.329;VarDP=14 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:27:99:27:0,268,268 1/2:0,7,7:14:99:.:912,282,527,283,0,778:0,0,5,9 +chrX 3307424 . T TTATC 1906.97 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=25.61;BaseQRankSum=-1.815;DP=89;ExcessHet=0.0000;FS=1.916;MQ=60.00;MQRankSum=0;QD=25.61;ReadPosRankSum=-0.783;SOR=0.941;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:1204,0:0,0,12,15 0/1:29,20:49:99:742,0,1158:14,15,8,12 +chrX 3310370 . G A 1331 . AC=2;AF=0.667;AN=3;AS_AltDP=48;AS_QD=17.01;BaseQRankSum=0.323;DP=83;ExcessHet=0.0000;FS=26.099;MQ=46.11;MQRankSum=-1.583;QD=17.01;ReadPosRankSum=0.467;SOR=1.945;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:828,0:0,0,4,22 0/1:32,22:54:99:533,0,848:20,12,9,13 +chrX 3310612 . G C 466 . AC=2;AF=0.667;AN=3;AS_AltDP=14;AS_QD=11.53;BaseQRankSum=1.275;DP=44;ExcessHet=0.0000;FS=7.009;MQ=53.11;MQRankSum=-5.275;QD=11.53;ReadPosRankSum=0.277;SOR=1.744;VarDP=43 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,6:6:99:.:.:270,0:.:0,0,4,2 0|1:29,8:37:99:0|1:3310612_G_C:226,0,1192:3310612:14,15,6,2 +chrX 3310622 . G C 402 . AC=2;AF=0.667;AN=3;AS_AltDP=12;AS_QD=10.29;BaseQRankSum=1.096;DP=44;ExcessHet=0.0000;FS=13.819;MQ=53.39;MQRankSum=-4.814;QD=10.29;ReadPosRankSum=1.677;SOR=2.655;VarDP=42 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,6:6:99:.:.:270,0:.:0,0,4,2 0|1:30,6:36:99:0|1:3310612_G_C:162,0,1230:3310612:14,16,6,0 +chrX 3310850 . A G 1214 . AC=2;AF=0.667;AN=3;AS_AltDP=44;AS_QD=15.55;BaseQRankSum=0.275;DP=82;ExcessHet=0.0000;FS=0.840;MQ=56.80;MQRankSum=-5.008;QD=15.55;ReadPosRankSum=-0.381;SOR=0.577;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,19:19:99:628,0:0,0,10,9 0/1:36,25:61:99:616,0,998:20,16,13,12 +chrX 3311993 . A T 1653 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=19.13;BaseQRankSum=2.38;DP=89;ExcessHet=0.0000;FS=0.840;MQ=60.00;MQRankSum=0;QD=19.13;ReadPosRankSum=0.051;SOR=0.866;VarDP=88 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:878,0:0,0,14,13 0/1:32,29:61:99:805,0,829:15,17,10,19 +chrX 3312259 . C G 1327 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=15.96;BaseQRankSum=-0.399;DP=92;ExcessHet=0.0000;FS=1.792;MQ=60.00;MQRankSum=0;QD=15.96;ReadPosRankSum=0.974;SOR=0.465;VarDP=85 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:864,0:0,0,13,13 0/1:38,21:59:99:493,0,1053:22,16,11,10 +chrX 3312730 . GT G 1373.97 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=19.63;BaseQRankSum=-1.075;DP=86;ExcessHet=0.0000;FS=5.246;MQ=60.00;MQRankSum=0;QD=19.63;ReadPosRankSum=0.212;SOR=0.947;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:842,0:0,0,12,16 0/1:21,23:44:99:571,0,506:12,9,9,14 +chrX 3313217 . A G 1556 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=19.11;BaseQRankSum=2.152;DP=88;ExcessHet=0.0000;FS=14.422;MQ=60.00;MQRankSum=0;QD=19.11;ReadPosRankSum=0.479;SOR=1.462;VarDP=83 GT:AD:DP:GQ:PL:SB 1:1,32:33:99:992,0:1,0,13,19 0/1:28,22:50:99:594,0,802:16,12,5,17 +chrX 3313317 . C T 1752 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=18.00;BaseQRankSum=-0.923;DP=101;ExcessHet=0.0000;FS=21.405;MQ=60.00;MQRankSum=0;QD=18.00;ReadPosRankSum=0.714;SOR=0.674;VarDP=99 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:1097,0:0,0,13,20 0/1:38,28:66:99:685,0,1028:27,11,13,15 +chrX 3313370 . C T 2197 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=24.47;BaseQRankSum=-1.606;DP=94;ExcessHet=0.0000;FS=8.808;MQ=60.00;MQRankSum=0;QD=24.47;ReadPosRankSum=-0.585;SOR=0.237;VarDP=91 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,27:27:99:.:.:1121,0:.:0,0,14,13 0|1:34,30:64:99:0|1:3313370_C_T:1106,0,1262:3313370:23,11,15,15 +chrX 3313394 . G A 2255 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=25.11;BaseQRankSum=-3.098;DP=93;ExcessHet=0.0000;FS=7.277;MQ=60.00;MQRankSum=0;QD=25.11;ReadPosRankSum=-1.021;SOR=0.572;VarDP=91 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,27:27:99:.:.:1130,0:.:0,0,12,15 0|1:32,32:64:99:0|1:3313370_C_T:1155,0,1183:3313370:20,12,15,17 +chrX 3313539 . T C 1181 . AC=2;AF=0.667;AN=3;AS_AltDP=46;AS_QD=13.46;BaseQRankSum=-1.176;DP=93;ExcessHet=0.0000;FS=1.740;MQ=59.94;MQRankSum=0.658;QD=13.46;ReadPosRankSum=-0.756;SOR=0.972;VarDP=90 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:892,0:0,0,9,20 0/1:44,17:61:99:319,0,1213:20,24,9,8 +chrX 3313809 . G A 1673 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=15.77;BaseQRankSum=-1.16;DP=112;ExcessHet=0.0000;FS=6.240;MQ=60.00;MQRankSum=0;QD=15.77;ReadPosRankSum=-0.941;SOR=1.247;VarDP=108 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:923,0:0,0,19,10 0/1:45,34:79:99:780,0,1172:22,23,20,14 +chrX 3314063 . A G 1797 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=19.23;BaseQRankSum=-0.485;DP=98;ExcessHet=0.0000;FS=1.747;MQ=60.00;MQRankSum=0;QD=19.23;ReadPosRankSum=0.911;SOR=0.534;VarDP=95 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:978,0:0,0,16,13 0/1:34,32:66:99:849,0,944:15,19,15,17 +chrX 3314280 . A C 2067 . AC=2;AF=0.667;AN=3;AS_AltDP=69;AS_QD=19.78;BaseQRankSum=0.723;DP=108;ExcessHet=0.0000;FS=1.633;MQ=60.00;MQRankSum=0;QD=19.78;ReadPosRankSum=0.449;SOR=0.542;VarDP=106 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:998,0:0,0,20,9 0/1:37,40:77:99:1099,0,934:22,15,18,22 +chrX 3314658 . C A 1614 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=21.35;BaseQRankSum=1.344;DP=80;ExcessHet=0.0000;FS=4.883;MQ=60.00;MQRankSum=0;QD=21.35;ReadPosRankSum=0.891;SOR=0.791;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:1027,0:0,0,16,15 0/1:24,22:46:99:617,0,641:10,14,14,8 +chrX 3314881 . CAGAT CAGATAGAT,C 1794.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=36,7;AS_QD=27.14,31.00;DP=67;ExcessHet=0.0000;FS=0.000;MQ=59.75;QD=42.65;SOR=0.739;VarDP=43 GT:AD:DP:GQ:PL:SB 1:0,18,0:18:99:809,0,810:0,0,7,11 1/2:0,18,7:25:99:1025,285,231,743,0,860:0,0,15,10 +chrX 3315071 . C A 1310 . AC=2;AF=0.667;AN=3;AS_AltDP=43;AS_QD=21.97;BaseQRankSum=1.769;DP=67;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=21.97;ReadPosRankSum=0.842;SOR=0.739;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:854,0:0,0,12,14 0/1:18,17:35:99:486,0,489:9,9,9,8 +chrX 3315141 . C T 1220 . AC=2;AF=0.667;AN=3;AS_AltDP=42;AS_QD=18.38;BaseQRankSum=3.742;DP=75;ExcessHet=0.0000;FS=0.955;MQ=60.00;MQRankSum=0;QD=18.38;ReadPosRankSum=1.008;SOR=0.545;VarDP=68 GT:AD:DP:GQ:PL:SB 1:2,26:28:99:849,0:2,0,11,15 0/1:24,16:40:99:401,0,694:14,10,13,3 +chrX 3315305 . A AC 1218.97 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=32.20;DP=89;ExcessHet=0.0000;FS=0.000;MQ=57.73;QD=43.38;SOR=1.255;VarDP=29 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,29:29:99:.:1258,0:0,0,11,18 0/0:.:56:69:56:0,69,1035 +chrX 3315306 . A AGAC 1218.97 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=28.74;DP=97;ExcessHet=0.0000;FS=0.000;MQ=57.66;QD=43.38;SOR=1.255;VarDP=29 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,29:29:99:.:1258,0:0,0,11,18 0/0:.:65:0:65:0,0,25 +chrX 3315340 . A AGAT 905.97 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=30.29;DP=81;ExcessHet=0.0000;FS=0.000;MQ=55.80;QD=45.00;SOR=0.784;VarDP=21 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,21:21:99:.:945,0:0,0,10,11 0/0:.:57:0:57:0,0,1504 +chrX 3315347 . T TA 815.97 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=24.55;DP=79;ExcessHet=0.0000;FS=0.000;MQ=55.17;QD=45.00;SOR=1.022;VarDP=19 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,19:19:99:.:855,0:0,0,8,11 0/0:.:58:67:58:0,67,1641 +chrX 3315363 . AGATAGATAGAATAGATAGATAGATAGAT A 128.97 . AC=1;AF=0.333;AN=3;AS_AltDP=7;AS_QD=3.82;BaseQRankSum=0.345;DP=64;ExcessHet=0.0000;FS=1.664;MQ=59.76;MQRankSum=0;QD=3.82;ReadPosRankSum=-1.959;SOR=1.220;VarDP=44 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:15:45:15:.:.:0,45 0|1:37,7:44:99:.:0|1:3315363_AGATAGATAGAATAGATAGATAGATAGAT_A:168,0,1482:3315363:21,16,5,2 +chrX 3315373 . A ATAGATAGATAGATAGATGAAATAGGTAGAAGGATGGATAGATGATGG,* 995.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=23,0;AS_QD=25.48,25.63;DP=73;ExcessHet=0.0000;FS=0.000;MQ=52.98;QD=45.00;SOR=0.687;VarDP=23 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,23,0:23:99:.:.:1035,0,1035:.:0,0,12,11 0|2:37,0,7:44:99:0|1:3315363_AGATAGATAGAATAGATAGATAGATAGAT_A:168,279,1784,0,1504,1482:3315363:21,16,5,2 +chrX 3315391 . T TGATAGATAGATA,* 772.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=19,0;AS_QD=25.14,33.15;DP=71;ExcessHet=0.0000;FS=2.194;MQ=53.81;QD=42.74;SOR=1.077;VarDP=19 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,19,0:19:99:.:.:812,0,813:.:0,0,12,7 0|2:37,0,7:44:99:0|1:3315363_AGATAGATAGAATAGATAGATAGATAGAT_A:168,279,1784,0,1504,1482:3315363:21,16,5,2 +chrX 3315468 . T C 2830 . AC=2;AF=0.667;AN=3;AS_AltDP=71;AS_QD=28.04;BaseQRankSum=0.136;DP=104;ExcessHet=0.0000;FS=2.837;MQ=58.84;MQRankSum=-1.969;QD=28.04;ReadPosRankSum=0.325;SOR=0.927;VarDP=102 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,38:38:99:.:.:1618,0:.:0,0,20,18 0|1:31,33:64:99:0|1:3315468_T_C:1242,0,1116:3315468:15,16,20,13 +chrX 3315488 . A T 2665 . AC=2;AF=0.667;AN=3;AS_AltDP=65;AS_QD=27.78;BaseQRankSum=0.401;DP=100;ExcessHet=0.0000;FS=7.004;MQ=59.17;MQRankSum=-1.77;QD=27.78;ReadPosRankSum=0.96;SOR=0.699;VarDP=97 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,34:34:99:.:.:1489,0:.:0,0,18,16 0|1:32,31:63:99:0|1:3315468_T_C:1206,0,1205:3315468:13,19,18,13 +chrX 3315531 . C T 2003 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=22.59;BaseQRankSum=-0.858;DP=95;ExcessHet=0.0000;FS=7.272;MQ=59.22;MQRankSum=-1.771;QD=22.59;ReadPosRankSum=-0.289;SOR=0.332;VarDP=90 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,29:29:99:.:.:968,0:.:0,0,14,15 0|1:31,30:61:99:0|1:3315468_T_C:1065,0,1109:3315468:11,20,16,14 +chrX 3315813 . T C 1612 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=18.45;BaseQRankSum=-1.665;DP=96;ExcessHet=0.0000;FS=4.223;MQ=60.00;MQRankSum=0;QD=18.45;ReadPosRankSum=1.04;SOR=0.971;VarDP=89 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:893,0:0,0,11,17 0/1:32,29:61:99:749,0,908:17,15,13,16 +chrX 3316012 . TG T 1037.97 . AC=2;AF=0.667;AN=3;AS_AltDP=27;AS_QD=18.57;BaseQRankSum=0.341;DP=62;ExcessHet=0.0000;FS=0.000;MQ=58.07;MQRankSum=-2.263;QD=18.57;ReadPosRankSum=-0.312;SOR=0.757;VarDP=58 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,15:15:99:.:.:676,0:.:0,0,6,9 0|1:31,12:43:99:0|1:3316012_TG_T:401,0,1266:3316012:12,19,4,8 +chrX 3316014 . AGTATTTGTTCTGGATCCGAGTTTAGAGGG A 1018.97 . AC=2;AF=0.667;AN=3;AS_AltDP=27;AS_QD=16.53;BaseQRankSum=0.161;DP=67;ExcessHet=0.0000;FS=0.961;MQ=58.21;MQRankSum=-2.476;QD=16.53;ReadPosRankSum=-0.271;SOR=0.831;VarDP=64 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,15:15:99:.:.:675,0:.:0,0,6,9 0|1:37,12:49:99:0|1:3316012_TG_T:383,0,1518:3316012:15,22,4,8 +chrX 3316056 . T C 1008 . AC=2;AF=0.667;AN=3;AS_AltDP=26;AS_QD=17.90;BaseQRankSum=-0.252;DP=58;ExcessHet=0.0000;FS=1.042;MQ=56.93;MQRankSum=-3.357;QD=17.90;ReadPosRankSum=0.306;SOR=0.951;VarDP=58 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,14:14:99:.:.:630,0:.:0,0,5,9 0|1:32,12:44:99:0|1:3316012_TG_T:408,0,1308:3316012:13,19,4,8 +chrX 3316057 . G C 963 . AC=2;AF=0.667;AN=3;AS_AltDP=25;AS_QD=17.42;BaseQRankSum=-2.365;DP=57;ExcessHet=0.0000;FS=1.032;MQ=56.87;MQRankSum=-3.357;QD=17.42;ReadPosRankSum=-0.072;SOR=0.882;VarDP=57 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,13:13:99:.:.:585,0:.:0,0,5,8 0|1:32,12:44:99:0|1:3316012_TG_T:408,0,1308:3316012:13,19,4,8 +chrX 3316060 . GAAAAAGCACA G 989.97 . AC=2;AF=0.667;AN=3;AS_AltDP=26;AS_QD=16.87;BaseQRankSum=-0.789;DP=61;ExcessHet=0.0000;FS=2.147;MQ=56.79;MQRankSum=-3.505;QD=16.87;ReadPosRankSum=-0.73;SOR=1.003;VarDP=61 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,14:14:99:.:.:630,0:.:0,0,6,8 0|1:35,12:47:99:0|1:3316012_TG_T:399,0,1434:3316012:16,19,4,8 +chrX 3316072 . A ATT 914.97 . AC=2;AF=0.667;AN=3;AS_AltDP=24;AS_QD=17.35;BaseQRankSum=0.612;DP=55;ExcessHet=0.0000;FS=5.640;MQ=56.43;MQRankSum=-3.456;QD=17.35;ReadPosRankSum=-0.529;SOR=1.494;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,13:13:99:.:.:585,0:.:0,0,5,8 0|1:31,11:42:99:0|1:3316012_TG_T:369,0,1269:3316012:16,15,3,8 +chrX 3316073 . C T 921 . AC=2;AF=0.667;AN=3;AS_AltDP=24;AS_QD=16.98;BaseQRankSum=0.993;DP=56;ExcessHet=0.0000;FS=7.465;MQ=56.50;MQRankSum=-3.509;QD=16.98;ReadPosRankSum=0.259;SOR=1.472;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,13:13:99:.:.:585,0:.:0,0,5,8 0|1:32,11:43:99:0|1:3316012_TG_T:366,0,1311:3316012:17,15,3,8 +chrX 3316077 . G GA 779.97 . AC=2;AF=0.667;AN=3;AS_AltDP=21;AS_QD=15.17;BaseQRankSum=-1.438;DP=54;ExcessHet=0.0000;FS=8.023;MQ=56.36;MQRankSum=-3.944;QD=15.17;ReadPosRankSum=0.126;SOR=1.811;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,12:12:99:.:.:540,0:.:0,0,5,7 0|1:33,9:42:99:0|1:3316012_TG_T:279,0,1359:3316012:17,16,1,8 +chrX 3316078 . G GGT 779.97 . AC=2;AF=0.667;AN=3;AS_AltDP=21;AS_QD=15.17;BaseQRankSum=-0.153;DP=54;ExcessHet=0.0000;FS=8.023;MQ=56.36;MQRankSum=-3.944;QD=15.17;ReadPosRankSum=-0.016;SOR=1.811;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,12:12:99:.:.:540,0:.:0,0,5,7 0|1:33,9:42:99:0|1:3316012_TG_T:279,0,1359:3316012:17,16,1,8 +chrX 3316081 . G A 792 . AC=2;AF=0.667;AN=3;AS_AltDP=21;AS_QD=15.51;BaseQRankSum=0.815;DP=53;ExcessHet=0.0000;FS=10.186;MQ=56.29;MQRankSum=-3.887;QD=15.51;ReadPosRankSum=-0.34;SOR=1.794;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,12:12:99:.:.:540,0:.:0,0,5,7 0|1:32,9:41:99:0|1:3316012_TG_T:282,0,1317:3316012:17,15,1,8 +chrX 3316084 . C T 828 . AC=2;AF=0.667;AN=3;AS_AltDP=22;AS_QD=16.19;BaseQRankSum=1.462;DP=53;ExcessHet=0.0000;FS=7.625;MQ=55.96;MQRankSum=-3.828;QD=16.19;ReadPosRankSum=-0.434;SOR=1.586;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,13:13:99:.:.:573,0:.:0,0,6,7 0|1:31,9:40:99:0|1:3316012_TG_T:285,0,1275:3316012:16,15,1,8 +chrX 3316085 . GC G 821.97 . AC=2;AF=0.667;AN=3;AS_AltDP=22;AS_QD=16.56;BaseQRankSum=1.322;DP=54;ExcessHet=0.0000;FS=5.872;MQ=55.52;MQRankSum=-3.769;QD=16.56;ReadPosRankSum=-0.417;SOR=1.609;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,13:13:99:.:.:573,0:.:0,0,6,7 0|1:30,9:39:99:0|1:3316012_TG_T:288,0,1233:3316012:15,15,1,8 +chrX 3316171 . A G 840 . AC=2;AF=0.667;AN=3;AS_AltDP=30;AS_QD=15.82;BaseQRankSum=-0.304;DP=59;ExcessHet=0.0000;FS=0.000;MQ=47.81;MQRankSum=-5.452;QD=15.82;ReadPosRankSum=-1.2;SOR=0.746;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,17:17:99:577,0:0,0,8,9 0/1:25,13:38:99:293,0,705:13,12,8,5 +chrX 3316235 . AC A 1204.97 . AC=2;AF=0.667;AN=3;AS_AltDP=31;AS_QD=20.39;BaseQRankSum=1.779;DP=63;ExcessHet=0.0000;FS=5.091;MQ=49.73;MQRankSum=-5.78;QD=20.39;ReadPosRankSum=0.919;SOR=0.895;VarDP=61 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,14:14:99:.:.:620,0:.:0,0,7,7 0|1:30,17:47:99:0|1:3316235_AC_A:624,0,1187:3316235:13,17,11,6 +chrX 3316239 . G T 1208 . AC=2;AF=0.667;AN=3;AS_AltDP=31;AS_QD=19.65;BaseQRankSum=0.132;DP=65;ExcessHet=0.0000;FS=3.442;MQ=50.08;MQRankSum=-5.919;QD=19.65;ReadPosRankSum=1.078;SOR=0.968;VarDP=63 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,14:14:99:.:.:620,0:.:0,0,7,7 0|1:32,17:49:99:0|1:3316235_AC_A:618,0,1271:3316235:15,17,11,6 +chrX 3316241 . G T 1208 . AC=2;AF=0.667;AN=3;AS_AltDP=31;AS_QD=19.65;BaseQRankSum=0.503;DP=63;ExcessHet=0.0000;FS=3.442;MQ=50.54;MQRankSum=-5.919;QD=19.65;ReadPosRankSum=1.063;SOR=0.968;VarDP=63 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,14:14:99:.:.:620,0:.:0,0,7,7 0|1:32,17:49:99:0|1:3316235_AC_A:618,0,1271:3316235:15,17,11,6 +chrX 3316245 . C G 1179 . AC=2;AF=0.667;AN=3;AS_AltDP=30;AS_QD=20.15;BaseQRankSum=1.915;DP=60;ExcessHet=0.0000;FS=5.208;MQ=50.66;MQRankSum=-5.89;QD=20.15;ReadPosRankSum=1.373;SOR=1.008;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,13:13:99:.:.:585,0:.:0,0,7,6 0|1:30,17:47:99:0|1:3316235_AC_A:624,0,1209:3316235:13,17,11,6 +chrX 3316249 . G A 1221 . AC=2;AF=0.667;AN=3;AS_AltDP=31;AS_QD=20.51;BaseQRankSum=0.19;DP=61;ExcessHet=0.0000;FS=6.913;MQ=51.15;MQRankSum=-5.27;QD=20.51;ReadPosRankSum=0.843;SOR=1.089;VarDP=61 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,13:13:99:.:.:585,0:.:0,0,7,6 0|1:30,18:48:99:0|1:3316235_AC_A:666,0,1206:3316235:13,17,12,6 +chrX 3316263 . A G 1224 . AC=2;AF=0.667;AN=3;AS_AltDP=31;AS_QD=21.25;BaseQRankSum=-0.438;DP=59;ExcessHet=0.0000;FS=9.185;MQ=52.04;MQRankSum=-5.964;QD=21.25;ReadPosRankSum=0.518;SOR=1.294;VarDP=59 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,12:12:99:.:.:540,0:.:0,0,7,5 0|1:28,19:47:99:0|1:3316235_AC_A:714,0,1119:3316235:12,16,13,6 +chrX 3316268 . A C 1143 . AC=2;AF=0.667;AN=3;AS_AltDP=29;AS_QD=20.95;BaseQRankSum=-1.189;DP=56;ExcessHet=0.0000;FS=9.708;MQ=52.33;MQRankSum=-5.846;QD=20.95;ReadPosRankSum=0.497;SOR=1.336;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,12:12:99:.:.:540,0:.:0,0,7,5 0|1:27,17:44:99:0|1:3316235_AC_A:633,0,1083:3316235:11,16,12,5 +chrX 3316289 . G A 1320 . AC=2;AF=0.667;AN=3;AS_AltDP=33;AS_QD=23.28;BaseQRankSum=-1.609;DP=58;ExcessHet=0.0000;FS=7.340;MQ=52.48;MQRankSum=-5.394;QD=23.28;ReadPosRankSum=-0.545;SOR=1.002;VarDP=58 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,13:13:99:.:.:585,0:.:0,0,7,6 0|1:25,20:45:99:0|1:3316235_AC_A:765,0,990:3316235:10,15,13,7 +chrX 3316301 . G C 1233 . AC=2;AF=0.667;AN=3;AS_AltDP=31;AS_QD=22.16;BaseQRankSum=0.389;DP=57;ExcessHet=0.0000;FS=7.296;MQ=53.33;MQRankSum=-5.02;QD=22.16;ReadPosRankSum=-0.369;SOR=0.816;VarDP=57 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,13:13:99:.:.:585,0:.:0,0,7,6 0|1:26,18:44:99:0|1:3316235_AC_A:678,0,1038:3316235:10,16,11,7 +chrX 3316305 . T C 1278 . AC=2;AF=0.667;AN=3;AS_AltDP=32;AS_QD=22.95;BaseQRankSum=1.495;DP=57;ExcessHet=0.0000;FS=5.393;MQ=53.66;MQRankSum=-4.791;QD=22.95;ReadPosRankSum=-0.308;SOR=0.731;VarDP=57 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,13:13:99:.:.:585,0:.:0,0,7,6 0|1:25,19:44:99:0|1:3316235_AC_A:723,0,993:3316235:10,15,11,8 +chrX 3316315 . AAAATAAATAAATAAATAAAT A 1218.97 . AC=2;AF=0.667;AN=3;AS_AltDP=32;AS_QD=20.62;BaseQRankSum=0.828;DP=62;ExcessHet=0.0000;FS=6.909;MQ=55.38;MQRankSum=-4.575;QD=20.62;ReadPosRankSum=-1.32;SOR=1.190;VarDP=61 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,9:9:99:.:.:405,0:.:0,0,5,4 0|1:29,23:52:99:0|1:3316235_AC_A:853,0,1138:3316235:13,16,15,8 +chrX 3316472 . C T 1378 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=19.29;BaseQRankSum=1.733;DP=81;ExcessHet=0.0000;FS=0.000;MQ=59.80;MQRankSum=0;QD=19.29;ReadPosRankSum=-0.146;SOR=0.596;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:744,0:0,0,11,12 0/1:26,24:50:99:664,0,668:14,12,13,11 +chrX 3316497 . T TTAATAATAATAATAA 1404.97 . AC=2;AF=0.667;AN=3;AS_AltDP=35;AS_QD=24.07;BaseQRankSum=1.585;DP=85;ExcessHet=0.0000;FS=5.275;MQ=59.65;MQRankSum=-1.164;QD=24.07;ReadPosRankSum=-0.167;SOR=0.379;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,18:18:99:807,0:0,0,8,10 0/1:25,17:42:99:637,0,989:16,9,9,8 +chrX 3316558 . CT C 3409.97 . AC=3;AF=1.00;AN=3;AS_AltDP=84;AS_QD=30.98;DP=86;ExcessHet=0.0000;FS=0.000;MQ=59.84;QD=41.06;SOR=1.013;VarDP=84 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:1074,0:0,0,9,16 1/1:0,59:59:99:2375,178,0:0,0,27,32 +chrX 3316580 . G A 1455 . AC=2;AF=0.667;AN=3;AS_AltDP=43;AS_QD=18.56;BaseQRankSum=3.189;DP=81;ExcessHet=0.0000;FS=1.868;MQ=60.00;MQRankSum=0;QD=18.56;ReadPosRankSum=-0.023;SOR=0.963;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,20:20:99:865,0:0,0,6,14 0/1:37,23:60:99:620,0,961:16,21,10,13 +chrX 3317683 . C T 1840 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=19.68;BaseQRankSum=-0.837;DP=97;ExcessHet=0.0000;FS=22.897;MQ=60.00;MQRankSum=0;QD=19.68;ReadPosRankSum=-0.099;SOR=0.513;VarDP=95 GT:AD:DP:GQ:PL:SB 1:0,39:39:99:1260,0:0,0,25,14 0/1:32,24:56:99:610,0,912:8,24,10,14 +chrX 3318866 . TA T 1810.97 . AC=2;AF=0.667;AN=3;AS_AltDP=71;AS_QD=18.50;BaseQRankSum=-0.541;DP=113;ExcessHet=0.0000;FS=0.835;MQ=60.00;MQRankSum=0;QD=18.50;ReadPosRankSum=0.155;SOR=0.893;VarDP=100 GT:AD:DP:GQ:PL:SB 1:0,38:38:99:1091,0:0,0,13,25 0/1:29,33:62:99:759,0,644:14,15,18,15 +chrX 3318998 . C T 1515 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=20.60;BaseQRankSum=0.564;DP=79;ExcessHet=0.0000;FS=6.668;MQ=59.52;MQRankSum=-1.157;QD=20.60;ReadPosRankSum=-0.792;SOR=0.473;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,21:21:99:690,0:0,0,9,12 0/1:22,32:54:99:855,0,518:8,14,19,13 +chrX 3319044 . T G 1457 . AC=2;AF=0.667;AN=3;AS_AltDP=50;AS_QD=20.37;BaseQRankSum=-0.582;DP=74;ExcessHet=0.0000;FS=4.929;MQ=59.49;MQRankSum=-1.244;QD=20.37;ReadPosRankSum=1.235;SOR=0.314;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,21:21:99:690,0:0,0,10,11 0/1:23,29:52:99:797,0,622:8,15,14,15 +chrX 3319055 . G T 2100 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=28.78;BaseQRankSum=-1.813;DP=74;ExcessHet=0.0000;FS=2.136;MQ=59.49;MQRankSum=-1.266;QD=28.78;ReadPosRankSum=1.066;SOR=0.431;VarDP=74 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,23:23:99:.:.:1024,0:.:0,0,10,13 0|1:23,28:51:99:0|1:3319055_G_T:1106,0,881:3319055:8,15,12,16 +chrX 3319056 . G C 2100 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=28.78;BaseQRankSum=-1.746;DP=74;ExcessHet=0.0000;FS=2.136;MQ=59.49;MQRankSum=-1.266;QD=28.78;ReadPosRankSum=1.25;SOR=0.431;VarDP=74 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,23:23:99:.:.:1024,0:.:0,0,10,13 0|1:23,28:51:99:0|1:3319055_G_T:1106,0,881:3319055:8,15,12,16 +chrX 3319063 . A G 2069 . AC=2;AF=0.667;AN=3;AS_AltDP=50;AS_QD=29.15;BaseQRankSum=-1.208;DP=72;ExcessHet=0.0000;FS=2.174;MQ=59.47;MQRankSum=-1.238;QD=29.15;ReadPosRankSum=0.667;SOR=0.399;VarDP=72 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,22:22:99:.:.:990,0:.:0,0,11,11 0|1:22,28:50:99:0|1:3319055_G_T:1109,0,839:3319055:8,14,12,16 +chrX 3319073 . A T 2073 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=28.42;BaseQRankSum=-1.775;DP=75;ExcessHet=0.0000;FS=7.094;MQ=59.50;MQRankSum=-1.216;QD=28.42;ReadPosRankSum=0.352;SOR=0.206;VarDP=74 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,23:23:99:.:.:983,0:.:0,0,10,13 0|1:22,29:51:99:0|1:3319055_G_T:1120,0,816:3319055:6,16,14,15 +chrX 3319186 . T C 1742 . AC=2;AF=0.667;AN=3;AS_AltDP=66;AS_QD=20.37;BaseQRankSum=-1.168;DP=89;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=20.37;ReadPosRankSum=0.178;SOR=0.724;VarDP=87 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:788,0:0,0,13,14 0/1:21,39:60:99:984,0,496:10,11,18,21 +chrX 3319543 . C T 1981 . AC=2;AF=0.667;AN=3;AS_AltDP=67;AS_QD=21.39;BaseQRankSum=1.292;DP=98;ExcessHet=0.0000;FS=1.879;MQ=60.00;MQRankSum=0;QD=21.39;ReadPosRankSum=-1.703;SOR=0.864;VarDP=94 GT:AD:DP:GQ:PL:SB 1:0,37:37:99:1176,0:0,0,22,15 0/1:27,30:57:99:835,0,718:13,14,15,15 +chrX 3319683 . G A 1837 . AC=2;AF=0.667;AN=3;AS_AltDP=65;AS_QD=17.13;BaseQRankSum=0.551;DP=112;ExcessHet=0.0000;FS=0.721;MQ=60.00;MQRankSum=0;QD=17.13;ReadPosRankSum=1.043;SOR=0.612;VarDP=109 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:1025,0:0,0,17,14 0/1:44,34:78:99:842,0,1125:24,20,17,17 +chrX 3320126 . T G 1722 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=22.75;BaseQRankSum=-0.662;DP=79;ExcessHet=0.0000;FS=1.013;MQ=60.00;MQRankSum=0;QD=22.75;ReadPosRankSum=-0.554;SOR=0.539;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:968,0:0,0,16,13 0/1:18,30:48:99:784,0,453:10,8,14,16 +chrX 3320692 . G A 1454 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=17.26;BaseQRankSum=-0.538;DP=89;ExcessHet=0.0000;FS=5.685;MQ=60.00;MQRankSum=0;QD=17.26;ReadPosRankSum=-2.141;SOR=0.729;VarDP=86 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:970,0:0,0,18,13 0/1:34,21:55:99:514,0,956:14,20,11,10 +chrX 3321504 . C T 1647 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=20.96;BaseQRankSum=-0.748;DP=81;ExcessHet=0.0000;FS=3.252;MQ=60.00;MQRankSum=0;QD=20.96;ReadPosRankSum=-0.029;SOR=0.400;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:1008,0:0,0,19,11 0/1:25,25:50:99:669,0,688:16,9,11,14 +chrX 3322302 . G A 1236 . AC=2;AF=0.667;AN=3;AS_AltDP=42;AS_QD=20.10;BaseQRankSum=3.246;DP=65;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=20.10;ReadPosRankSum=-0.819;SOR=0.610;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,18:18:99:586,0:0,0,10,8 0/1:21,24:45:99:680,0,470:11,10,11,13 +chrX 3323009 . G A 1912 . AC=2;AF=0.667;AN=3;AS_AltDP=64;AS_QD=22.85;BaseQRankSum=0.993;DP=91;ExcessHet=0.0000;FS=8.828;MQ=59.84;MQRankSum=0;QD=22.85;ReadPosRankSum=-0.763;SOR=0.545;VarDP=85 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:1028,0:0,0,16,15 0/1:21,33:54:99:914,0,497:7,14,19,14 +chrX 3323215 . T C 1601 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=23.64;BaseQRankSum=0.324;DP=70;ExcessHet=0.0000;FS=2.468;MQ=60.00;MQRankSum=0;QD=23.64;ReadPosRankSum=1.285;SOR=1.179;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:968,0:0,0,10,19 0/1:16,24:40:99:663,0,396:8,8,11,13 +chrX 3323243 . A G 1670 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=24.29;BaseQRankSum=-0.805;DP=73;ExcessHet=0.0000;FS=8.752;MQ=60.00;MQRankSum=0;QD=24.29;ReadPosRankSum=0.067;SOR=0.984;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:938,0:0,0,8,20 0/1:14,28:42:99:762,0,341:9,5,14,14 +chrX 3323276 . T C 1453 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=21.81;BaseQRankSum=-1.198;DP=70;ExcessHet=0.0000;FS=20.315;MQ=60.00;MQRankSum=0;QD=21.81;ReadPosRankSum=0.334;SOR=0.641;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:802,0:0,0,10,17 0/1:16,25:41:99:681,0,423:13,3,12,13 +chrX 3323750 . G A 2050 . AC=2;AF=0.667;AN=3;AS_AltDP=68;AS_QD=24.19;BaseQRankSum=1.244;DP=89;ExcessHet=0.0000;FS=3.624;MQ=59.70;MQRankSum=0;QD=24.19;ReadPosRankSum=1.95;SOR=0.812;VarDP=86 GT:AD:DP:GQ:PL:SB 1:0,38:38:99:1221,0:0,0,16,22 0/1:18,30:48:99:859,0,431:10,8,14,16 +chrX 3325325 . A G 624 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=10.90;BaseQRankSum=0.524;DP=95;ExcessHet=0.0000;FS=3.505;MQ=60.00;MQRankSum=0;QD=10.90;ReadPosRankSum=0.403;SOR=0.947;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:34:99:34:0,605 0/1:34,26:60:99:.:654,0,877:18,16,11,15 +chrX 3325468 . ATC A 2503.97 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=27.95;BaseQRankSum=0.774;DP=92;ExcessHet=0.0000;FS=5.624;MQ=60.00;MQRankSum=0;QD=27.95;ReadPosRankSum=0.712;SOR=0.445;VarDP=91 GT:AD:DP:GQ:PL:SB 1:0,43:43:99:1922,0:0,0,22,21 0/1:31,17:48:99:621,0,1243:12,19,9,8 +chrX 3325770 . G A 1254 . AC=2;AF=0.667;AN=3;AS_AltDP=44;AS_QD=21.05;BaseQRankSum=1.082;DP=67;ExcessHet=0.0000;FS=2.510;MQ=59.62;MQRankSum=-0.915;QD=21.05;ReadPosRankSum=-0.446;SOR=1.211;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:790,0:0,0,8,18 0/1:17,18:35:99:494,0,415:8,9,8,10 +chrX 3325805 . C CATATATTTATAAATAAATATATAATAATATATTTATAAATAAATATATAATA 3224.97 . AC=2;AF=0.667;AN=3;AS_AltDP=77;AS_QD=27.96;BaseQRankSum=0.374;DP=112;ExcessHet=0.0000;FS=5.721;MQ=59.17;MQRankSum=-0.834;QD=35.48;ReadPosRankSum=-3.596;SOR=1.241;VarDP=92 GT:AD:DP:GQ:PL:SB 1:0,36:36:99:1604,0:0,0,21,15 0/1:15,41:56:99:1660,0,508:7,8,27,14 +chrX 3325847 . A AATAATTTATAATTATAATTTATAATATATAATTTATAATT 1046.97 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=32.05;DP=128;ExcessHet=0.0000;FS=0.000;MQ=59.72;QD=43.44;SOR=0.770;VarDP=25 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,25:25:99:.:1086,0:0,0,13,12 0/0:.:89:99:89:0,120,1800 +chrX 3326004 . T C 2254 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=26.87;BaseQRankSum=2.652;DP=89;ExcessHet=0.0000;FS=1.891;MQ=59.67;MQRankSum=0.159;QD=26.87;ReadPosRankSum=1.706;SOR=0.501;VarDP=85 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:2,29:31:99:.:.:1230,0:.:2,0,16,13 0|1:25,29:54:99:0|1:3326004_T_C:1054,0,870:3326004:9,16,11,18 +chrX 3326025 . T TTA 2605.97 . AC=2;AF=0.667;AN=3;AS_AltDP=66;AS_QD=29.72;BaseQRankSum=1.201;DP=93;ExcessHet=0.0000;FS=4.785;MQ=59.30;MQRankSum=-0.799;QD=29.72;ReadPosRankSum=-1.341;SOR=0.304;VarDP=89 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,33:33:99:.:.:1413,0:.:0,0,17,16 0|1:23,33:56:99:0|1:3326004_T_C:1232,0,831:3326004:8,15,15,18 +chrX 3326255 . G A 1030 . AC=1;AF=1.00;AN=1;AS_AltDP=24;AS_QD=27.02;DP=82;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.17;SOR=0.859;VarDP=24 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,24:24:99:.:1060,0:0,0,13,11 ./.:.:58:0:58:0,0,0 +chrX 3326296 . C A 1079 . AC=1;AF=1.00;AN=1;AS_AltDP=26;AS_QD=32.44;DP=73;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=42.65;SOR=0.846;VarDP=26 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,26:26:99:.:1109,0:0,0,14,12 ./.:.:47:0:47:0,0,0 +chrX 3326454 . G A 1964 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=22.92;BaseQRankSum=1.578;DP=87;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=22.92;ReadPosRankSum=0.145;SOR=0.726;VarDP=87 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,25:25:99:.:.:1063,0:.:0,0,10,15 0|1:34,28:62:99:0|1:3326454_G_A:931,0,1176:3326454:15,19,13,15 +chrX 3326486 . T C 2310 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=27.86;BaseQRankSum=-2.786;DP=84;ExcessHet=0.0000;FS=1.945;MQ=59.88;MQRankSum=-0.914;QD=27.86;ReadPosRankSum=-1.079;SOR=0.471;VarDP=84 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,27:27:99:.:.:1183,0:.:0,0,10,17 0|1:27,30:57:99:0|1:3326454_G_A:1157,0,1012:3326454:10,17,15,15 +chrX 3326528 . C A 1932 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=25.82;BaseQRankSum=1.55;DP=77;ExcessHet=0.0000;FS=0.925;MQ=59.87;MQRankSum=-0.904;QD=25.82;ReadPosRankSum=0.146;SOR=0.853;VarDP=76 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,25:25:99:.:.:996,0:.:0,0,12,13 0|1:24,27:51:99:0|1:3326454_G_A:966,0,774:3326454:12,12,16,11 +chrX 3327125 . G A 1228 . AC=2;AF=0.667;AN=3;AS_AltDP=45;AS_QD=16.34;BaseQRankSum=0.645;DP=79;ExcessHet=0.0000;FS=0.863;MQ=60.00;MQRankSum=0;QD=16.34;ReadPosRankSum=0.038;SOR=0.829;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:789,0:0,0,13,12 0/1:32,20:52:99:469,0,857:16,16,8,12 +chrX 3327163 . A G 1371 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=17.96;BaseQRankSum=-0.56;DP=81;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=17.96;ReadPosRankSum=0.934;SOR=0.812;VarDP=78 GT:AD:DP:GQ:PL:SB 1:0,19:19:99:640,0:0,0,6,13 0/1:31,28:59:99:761,0,860:12,19,11,17 +chrX 3327214 . GC G 1458.97 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=19.45;BaseQRankSum=1.284;DP=84;ExcessHet=0.0000;FS=0.882;MQ=60.00;MQRankSum=0;QD=19.45;ReadPosRankSum=0.174;SOR=0.623;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,17:17:99:607,0:0,0,8,9 0/1:30,30:60:99:891,0,857:16,14,15,15 +chrX 3327721 . A G 1515 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=20.88;BaseQRankSum=-0.688;DP=79;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=20.88;ReadPosRankSum=2.616;SOR=0.727;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:829,0:0,0,12,13 0/1:23,26:49:99:716,0,632:11,12,12,14 +chrX 3329153 . AGAAGGAAG A 752.97 . AC=2;AF=0.667;AN=3;AS_AltDP=20;AS_QD=20.84;BaseQRankSum=-0.873;DP=55;ExcessHet=0.0000;FS=0.000;MQ=59.95;MQRankSum=-1.208;QD=20.84;ReadPosRankSum=0.657;SOR=0.836;VarDP=38 GT:AD:DP:GQ:PL:SB 1:0,9:9:99:405,0:0,0,5,4 0/1:18,11:29:99:387,0,675:13,5,10,1 +chrX 3329203 . T A 824 . AC=2;AF=0.667;AN=3;AS_AltDP=29;AS_QD=20.83;BaseQRankSum=1.475;DP=47;ExcessHet=0.0000;FS=1.420;MQ=59.88;MQRankSum=0;QD=20.83;ReadPosRankSum=-2.304;SOR=1.045;VarDP=41 GT:AD:DP:GQ:PL:SB 1:0,12:12:99:415,0:0,0,6,6 0/1:12,17:29:99:439,0,256:8,4,15,2 +chrX 3329319 . A AGAAGGAAGGAATGAAGGAAAAAAGAAG 1523.97 . AC=2;AF=0.667;AN=3;AS_AltDP=38;AS_QD=30.65;BaseQRankSum=-0.061;DP=64;ExcessHet=0.0000;FS=2.762;MQ=59.67;MQRankSum=-1.113;QD=30.65;ReadPosRankSum=-0.591;SOR=0.954;VarDP=51 GT:AD:DP:GQ:PL:SB 1:0,18:18:99:798,0:0,0,11,7 0/1:13,20:33:99:765,0,487:6,7,11,9 +chrX 3329454 . A AAGATGAAGGAAGGGGAGAGAAGGAAGGAAGGAAGGC 1850.97 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=27.00;BaseQRankSum=0.123;DP=92;ExcessHet=0.0000;FS=2.175;MQ=59.56;MQRankSum=-1.63;QD=27.00;ReadPosRankSum=-2.772;SOR=1.139;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:1307,0:0,0,10,20 0/1:23,17:40:99:583,0,863:11,12,8,9 +chrX 3329585 . G A 1770 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=20.69;BaseQRankSum=0.654;DP=91;ExcessHet=0.0000;FS=6.157;MQ=60.00;MQRankSum=0;QD=20.69;ReadPosRankSum=0.336;SOR=1.392;VarDP=87 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:858,0:0,0,17,10 0/1:26,34:60:99:942,0,634:13,13,22,12 +chrX 3332308 . C G 1471 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=17.87;BaseQRankSum=-1.357;DP=87;ExcessHet=0.0000;FS=0.000;MQ=59.94;MQRankSum=0;QD=17.87;ReadPosRankSum=-0.576;SOR=0.634;VarDP=84 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:803,0:0,0,9,17 0/1:28,30:58:99:698,0,705:12,16,16,14 +chrX 3333302 . CAA CAAAAAAAAAAAA,C,CAAAA 504.97 . AC=1,1,1;AF=0.333,0.333,0.333;AN=3;AS_AltDP=9,6,8;AS_QD=24.40,17.86,15.22;BaseQRankSum=2.762;DP=51;ExcessHet=0.0000;FS=0.000;MQ=57.07;MQRankSum=0;QD=22.67;ReadPosRankSum=-1.472;SOR=0.446;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,9,0,0:9:99:244,0,245,245:0,0,0,9 2/3:1,0,6,8:15:99:300,340,449,175,271,323,163,217,0,222:0,1,9,5 +chrX 3333392 . A T 1885 . AC=3;AF=1.00;AN=3;AS_AltDP=61;AS_QD=29.92;BaseQRankSum=2.679;DP=72;ExcessHet=0.0000;FS=2.608;MQ=60.00;MQRankSum=0;QD=29.92;ReadPosRankSum=-1.014;SOR=0.254;VarDP=64 GT:AD:DP:GQ:PL:SB 1:1,25:26:99:794,0:1,0,17,8 1/1:2,36:38:79:1121,79,0:2,0,25,11 +chrX 3335348 . T C 1241 . AC=2;AF=0.667;AN=3;AS_AltDP=46;AS_QD=16.72;BaseQRankSum=-0.716;DP=79;ExcessHet=0.0000;FS=0.874;MQ=59.66;MQRankSum=0;QD=16.72;ReadPosRankSum=0.647;SOR=0.576;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:823,0:0,0,13,14 0/1:30,19:49:99:448,0,816:14,16,10,9 +chrX 3336087 . T C 1534 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=17.19;BaseQRankSum=0.183;DP=93;ExcessHet=0.0000;FS=4.126;MQ=60.00;MQRankSum=0;QD=17.19;ReadPosRankSum=0.071;SOR=0.351;VarDP=91 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:907,0:0,0,10,19 0/1:36,26:62:99:657,0,975:13,23,16,10 +chrX 3336997 . C G 1345 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=19.10;BaseQRankSum=-0.926;DP=72;ExcessHet=0.0000;FS=6.818;MQ=60.00;MQRankSum=0;QD=19.10;ReadPosRankSum=0.547;SOR=1.541;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,21:21:99:684,0:0,0,8,13 0/1:25,26:51:99:691,0,671:12,13,7,19 +chrX 3338958 . T TTAGA 525.97 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=16.62;BaseQRankSum=0.148;DP=85;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=16.62;ReadPosRankSum=1.944;SOR=0.821;VarDP=34 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,515 0/1:19,15:34:99:.:565,0,733:12,7,10,5 +chrX 3339304 . A G 1772 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=19.17;BaseQRankSum=0.972;DP=96;ExcessHet=0.0000;FS=0.000;MQ=59.95;MQRankSum=-1.092;QD=19.17;ReadPosRankSum=0.39;SOR=0.672;VarDP=94 GT:AD:DP:GQ:PL:SB 1:0,35:35:99:1126,0:0,0,20,15 0/1:33,26:59:99:676,0,869:16,17,11,15 +chrX 3341104 . A ATATAATATAATATATTATACATAATATATATTATGTATAATATAATATATTATACATAATATATATTATGTATAATATATTATATTATACATAATATATATTATGTATAATATATTATATTATG 1077.97 . AC=2;AF=0.667;AN=3;AS_AltDP=26;AS_QD=25.39;BaseQRankSum=2.343;DP=85;ExcessHet=0.0000;FS=1.263;MQ=56.11;MQRankSum=-1.317;QD=25.39;ReadPosRankSum=-1.52;SOR=1.092;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:35:99:35:0,180 1/1:18,26:44:51:.:1117,51,0:7,11,8,18 +chrX 3341427 . G A 48 . AC=1;AF=0.500;AN=2;AS_AltDP=3;AS_QD=8.67;BaseQRankSum=1.559;DP=13;ExcessHet=0.0000;FS=6.455;MQ=53.66;MQRankSum=0.712;QD=8.67;ReadPosRankSum=-1.51;SOR=0.859;VarDP=9 GT:AD:DP:GQ:MIN_DP:PL:SB .:.:3:0:3:0,0 0/1:6,3:9:78:.:78,0,112:1,5,2,1 +chrX 3341981 . T C 1936 . AC=2;AF=0.667;AN=3;AS_AltDP=64;AS_QD=25.53;BaseQRankSum=0.194;DP=78;ExcessHet=0.0000;FS=12.009;MQ=59.74;MQRankSum=-0.598;QD=25.53;ReadPosRankSum=0.09;SOR=0.086;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:1076,0:0,0,15,18 0/1:13,31:44:99:890,0,299:2,11,14,17 +chrX 3342016 . C CAACAATGATAGACTGGAAA 2557.97 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=28.22;BaseQRankSum=0.373;DP=79;ExcessHet=0.0000;FS=4.453;MQ=59.33;MQRankSum=-1.293;QD=35.09;ReadPosRankSum=-1.304;SOR=0.236;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:1304,0:0,0,14,15 0/1:13,32:45:99:1293,0,450:4,9,16,16 +chrX 3342464 . G T 1617 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=17.90;BaseQRankSum=-0.015;DP=95;ExcessHet=0.0000;FS=2.743;MQ=60.00;MQRankSum=0;QD=17.90;ReadPosRankSum=-0.838;SOR=0.601;VarDP=92 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:1022,0:0,0,14,16 0/1:38,24:62:99:625,0,1088:17,21,14,10 +chrX 3344095 . C G 1501 . AC=2;AF=0.667;AN=3;AS_AltDP=50;AS_QD=20.41;BaseQRankSum=-0.733;DP=77;ExcessHet=0.0000;FS=1.977;MQ=58.84;MQRankSum=-0.65;QD=20.41;ReadPosRankSum=-0.18;SOR=0.799;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:894,0:0,0,16,10 0/1:25,24:49:99:637,0,676:12,13,11,13 +chrX 3345490 . G A 1052 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=30.91;BaseQRankSum=-0.326;DP=69;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=30.91;ReadPosRankSum=1.189;SOR=0.330;VarDP=35 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,34:35:99:.:1082,0:1,0,19,15 0/0:.:36:34:34:0,34,933 +chrX 3345649 . T C 1968 . AC=2;AF=0.667;AN=3;AS_AltDP=67;AS_QD=21.72;BaseQRankSum=-0.684;DP=95;ExcessHet=0.0000;FS=4.575;MQ=60.00;MQRankSum=0;QD=21.72;ReadPosRankSum=1.198;SOR=0.593;VarDP=92 GT:AD:DP:GQ:PL:SB 1:0,38:38:99:1208,0:0,0,20,18 0/1:25,29:54:99:790,0,687:10,15,16,13 +chrX 3345704 . G A 1734 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=19.60;BaseQRankSum=0.76;DP=92;ExcessHet=0.0000;FS=1.877;MQ=60.00;MQRankSum=0;QD=19.60;ReadPosRankSum=-1.39;SOR=0.544;VarDP=90 GT:AD:DP:GQ:PL:SB 1:0,35:35:99:1065,0:0,0,16,19 0/1:27,28:55:99:699,0,680:12,15,16,12 +chrX 3346099 . C A 1294 . AC=2;AF=0.667;AN=3;AS_AltDP=43;AS_QD=20.69;BaseQRankSum=2.808;DP=66;ExcessHet=0.0000;FS=9.417;MQ=60.00;MQRankSum=0;QD=20.69;ReadPosRankSum=1.092;SOR=0.980;VarDP=64 GT:AD:DP:GQ:PL:SB 1:1,26:27:99:864,0:0,1,15,11 0/1:20,17:37:99:460,0,509:8,12,11,6 +chrX 3346414 . G A 1676 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=18.34;BaseQRankSum=-0.756;DP=97;ExcessHet=0.0000;FS=1.811;MQ=60.00;MQRankSum=0;QD=18.34;ReadPosRankSum=0.752;SOR=0.469;VarDP=93 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:877,0:0,0,15,14 0/1:32,32:64:99:829,0,881:20,12,19,13 +chrX 3347102 . A G 1242 . AC=2;AF=0.667;AN=3;AS_AltDP=42;AS_QD=19.57;BaseQRankSum=0.081;DP=68;ExcessHet=0.0000;FS=7.360;MQ=60.00;MQRankSum=0;QD=19.57;ReadPosRankSum=1.327;SOR=0.197;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:800,0:0,0,10,14 0/1:23,18:41:99:472,0,636:17,6,13,5 +chrX 3348007 . A ATT 1769.97 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=24.45;BaseQRankSum=-2.333;DP=84;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=24.45;ReadPosRankSum=-0.77;SOR=0.635;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:891,0:0,0,10,16 0/1:19,29:48:99:918,0,549:10,9,18,11 +chrX 3348094 . A C 2417 . AC=3;AF=1.00;AN=3;AS_AltDP=75;AS_QD=32.63;DP=78;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.63;SOR=0.832;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:1058,0:0,0,16,15 1/1:0,44:44:99:1389,131,0:0,0,24,20 +chrX 3349010 . C T 2229 . AC=2;AF=0.667;AN=3;AS_AltDP=72;AS_QD=23.53;BaseQRankSum=1.361;DP=100;ExcessHet=0.0000;FS=0.890;MQ=59.86;MQRankSum=0;QD=23.53;ReadPosRankSum=1.509;SOR=0.869;VarDP=96 GT:AD:DP:GQ:PL:SB 1:0,38:38:99:1291,0:0,0,17,21 0/1:24,34:58:99:968,0,585:12,12,16,18 +chrX 3349192 . TTGAA T 2166.97 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=28.65;BaseQRankSum=-1.485;DP=92;ExcessHet=0.0000;FS=3.350;MQ=60.00;MQRankSum=0;QD=28.65;ReadPosRankSum=-1.001;SOR=0.877;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:1171,0:0,0,10,16 0/1:24,27:51:99:1035,0,922:13,11,13,14 +chrX 3350539 . T G 1232 . AC=2;AF=0.667;AN=3;AS_AltDP=41;AS_QD=19.42;BaseQRankSum=2.225;DP=68;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=19.42;ReadPosRankSum=1.496;SOR=0.814;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:794,0:0,0,11,13 0/1:24,17:41:99:468,0,650:10,14,5,12 +chrX 3350669 . A AATAT 405.97 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=17.12;BaseQRankSum=-0.879;DP=57;ExcessHet=0.0000;FS=1.580;MQ=59.36;MQRankSum=1.391;QD=17.12;ReadPosRankSum=-0.231;SOR=0.868;VarDP=26 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:24:99:24:0,360 0/1:14,12:26:99:.:445,0,490:8,6,5,7 +chrX 3350695 . T TAC 1521.97 . AC=2;AF=0.667;AN=3;AS_AltDP=39;AS_QD=29.45;BaseQRankSum=0.723;DP=54;ExcessHet=0.0000;FS=6.734;MQ=58.86;MQRankSum=-1.158;QD=29.45;ReadPosRankSum=-0.911;SOR=0.856;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,19:19:99:.:.:826,0:.:0,0,12,7 0|1:14,20:34:99:0|1:3350695_T_TAC:735,0,514:3350695:5,9,11,9 +chrX 3350697 . T TATATATATATAC 1670.97 . AC=2;AF=0.667;AN=3;AS_AltDP=43;AS_QD=28.98;BaseQRankSum=-0.487;DP=60;ExcessHet=0.0000;FS=4.133;MQ=58.98;MQRankSum=-1.212;QD=28.98;ReadPosRankSum=-1.011;SOR=0.921;VarDP=59 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,22:22:99:.:.:939,0:.:0,0,14,8 0|1:16,21:37:99:0|1:3350695_T_TAC:771,0,575:3350695:7,9,11,10 +chrX 3350718 . A G 1450 . AC=2;AF=0.667;AN=3;AS_AltDP=38;AS_QD=29.02;BaseQRankSum=-2.01;DP=53;ExcessHet=0.0000;FS=2.855;MQ=59.34;MQRankSum=-0.889;QD=29.02;ReadPosRankSum=0.122;SOR=1.104;VarDP=51 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,24:24:99:.:.:962,0:.:0,0,16,8 0|1:13,14:27:99:0|1:3350695_T_TAC:518,0,454:3350695:6,7,7,7 +chrX 3350760 . G C 1476 . AC=2;AF=0.667;AN=3;AS_AltDP=50;AS_QD=22.15;BaseQRankSum=-0.385;DP=69;ExcessHet=0.0000;FS=2.334;MQ=60.00;MQRankSum=0;QD=22.15;ReadPosRankSum=0.41;SOR=0.431;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:987,0:0,0,18,13 0/1:18,19:37:99:519,0,494:12,6,11,8 +chrX 3351013 . G A 2020 . AC=2;AF=0.667;AN=3;AS_AltDP=66;AS_QD=21.81;BaseQRankSum=2.896;DP=95;ExcessHet=0.0000;FS=3.018;MQ=60.00;MQRankSum=0;QD=21.81;ReadPosRankSum=2.389;SOR=0.615;VarDP=94 GT:AD:DP:GQ:PL:SB 1:0,36:36:99:1191,0:0,0,17,19 0/1:28,30:58:99:859,0,694:16,12,14,16 +chrX 3351938 . T C 1444 . AC=2;AF=0.667;AN=3;AS_AltDP=49;AS_QD=17.98;BaseQRankSum=1.377;DP=82;ExcessHet=0.0000;FS=3.052;MQ=57.18;MQRankSum=0.011;QD=17.98;ReadPosRankSum=0.778;SOR=1.145;VarDP=82 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:799,0:0,0,9,15 0/1:33,25:58:99:675,0,903:16,17,10,15 +chrX 3352581 . G A 1681 . AC=2;AF=0.667;AN=3;AS_AltDP=42;AS_QD=23.44;BaseQRankSum=-1.078;DP=76;ExcessHet=0.0000;FS=4.504;MQ=50.08;MQRankSum=-6.545;QD=23.44;ReadPosRankSum=-1.608;SOR=0.352;VarDP=73 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,17:17:99:.:.:765,0:.:0,0,8,9 0|1:31,25:56:99:0|1:3352581_G_A:946,0,1226:3352581:12,19,13,12 +chrX 3352583 . T G 1681 . AC=2;AF=0.667;AN=3;AS_AltDP=42;AS_QD=23.44;BaseQRankSum=1.574;DP=73;ExcessHet=0.0000;FS=4.504;MQ=50.20;MQRankSum=-6.545;QD=23.44;ReadPosRankSum=-1.172;SOR=0.352;VarDP=73 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,17:17:99:.:.:765,0:.:0,0,8,9 0|1:31,25:56:99:0|1:3352581_G_A:946,0,1226:3352581:12,19,13,12 +chrX 3352585 . T C 1643 . AC=2;AF=0.667;AN=3;AS_AltDP=41;AS_QD=22.61;BaseQRankSum=-0.133;DP=74;ExcessHet=0.0000;FS=4.582;MQ=50.58;MQRankSum=-6.65;QD=22.61;ReadPosRankSum=-1.262;SOR=0.324;VarDP=74 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,17:17:99:.:.:765,0:.:0,0,8,9 0|1:33,24:57:99:0|1:3352581_G_A:908,0,1293:3352581:12,21,12,12 +chrX 3352590 . A G 1594 . AC=2;AF=0.667;AN=3;AS_AltDP=40;AS_QD=22.56;BaseQRankSum=-0.284;DP=73;ExcessHet=0.0000;FS=4.631;MQ=51.00;MQRankSum=-6.602;QD=22.56;ReadPosRankSum=-0.171;SOR=0.324;VarDP=72 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,17:17:99:.:.:755,0:.:0,0,9,8 0|1:32,23:55:99:0|1:3352581_G_A:869,0,1244:3352581:12,20,11,12 +chrX 3352830 . G T 2638 . AC=3;AF=1.00;AN=3;AS_AltDP=82;AS_QD=32.54;DP=87;ExcessHet=0.0000;FS=0.000;MQ=59.57;QD=32.54;SOR=1.292;VarDP=82 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:1007,0:0,0,13,18 1/1:0,51:51:99:1661,152,0:0,0,18,33 +chrX 3353808 . C T 2196 . AC=2;AF=0.667;AN=3;AS_AltDP=71;AS_QD=23.68;BaseQRankSum=2.151;DP=96;ExcessHet=0.0000;FS=0.000;MQ=59.99;MQRankSum=1.198;QD=23.68;ReadPosRankSum=0.796;SOR=0.642;VarDP=94 GT:AD:DP:GQ:PL:SB 1:0,40:40:99:1320,0:0,0,17,23 0/1:23,31:54:99:906,0,570:11,12,18,13 +chrX 3354523 . G A 1637 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=18.94;BaseQRankSum=0.532;DP=92;ExcessHet=0.0000;FS=4.343;MQ=59.91;MQRankSum=0;QD=18.94;ReadPosRankSum=1.282;SOR=0.355;VarDP=88 GT:AD:DP:GQ:PL:SB 1:1,27:28:99:864,0:1,0,12,15 0/1:28,32:60:99:803,0,669:17,11,18,14 +chrX 3355506 . A ATAATTAT 2155.97 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=27.10;BaseQRankSum=1.088;DP=94;ExcessHet=0.0000;FS=2.236;MQ=60.00;MQRankSum=0;QD=27.10;ReadPosRankSum=0.861;SOR=0.387;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:1030,0:0,0,6,6 0/1:27,30:57:99:1165,0,1043:17,10,11,9 +chrX 3355555 . A G,ATCATCTTTAATAATATTATAATTATTAATTATTAATG 1947 . AC=2,0;AF=0.667,0.00;AN=3;AS_AltDP=32,0;AS_QD=34.09,6.88;BaseQRankSum=-1.261;DP=113;ExcessHet=0.0000;FS=0.999;MQ=60.00;MQRankSum=0;QD=34.09;ReadPosRankSum=-1.02;SOR=0.538;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,12,0:12:99:1041,0,966:0,0,6,6 0/1:26,20,0:46:99:936,0,1291,832,980,2166:15,11,11,9 +chrX 3356167 . T A 1830 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=20.22;BaseQRankSum=-2.12;DP=95;ExcessHet=0.0000;FS=5.767;MQ=59.95;MQRankSum=0;QD=20.22;ReadPosRankSum=0.237;SOR=0.909;VarDP=92 GT:AD:DP:GQ:PL:SB 1:0,37:37:99:1241,0:0,0,23,14 0/1:30,25:55:99:619,0,857:13,17,13,12 +chrX 3356541 . T C 1456 . AC=2;AF=0.667;AN=3;AS_AltDP=49;AS_QD=19.55;BaseQRankSum=0.435;DP=81;ExcessHet=0.0000;FS=10.305;MQ=59.94;MQRankSum=-1.043;QD=19.55;ReadPosRankSum=-0.779;SOR=0.881;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:881,0:0,0,12,14 0/1:27,23:50:99:605,0,726:17,10,8,15 +chrX 3356623 . T G 1512 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=18.58;BaseQRankSum=1.259;DP=85;ExcessHet=0.0000;FS=1.828;MQ=60.00;MQRankSum=0;QD=18.58;ReadPosRankSum=1.715;SOR=0.803;VarDP=83 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:903,0:0,0,14,14 0/1:31,24:55:99:639,0,817:16,15,10,14 +chrX 3357537 . C CT 342.97 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=12.32;BaseQRankSum=-1.07;DP=78;ExcessHet=0.0000;FS=6.205;MQ=59.08;MQRankSum=-0.621;QD=12.32;ReadPosRankSum=1.29;SOR=0.124;VarDP=31 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:99:28:0,557 0/1:10,21:31:99:.:382,0,140:8,2,11,10 +chrX 3357725 . C T 1476 . AC=2;AF=0.667;AN=3;AS_AltDP=50;AS_QD=20.08;BaseQRankSum=0.719;DP=78;ExcessHet=0.0000;FS=1.977;MQ=59.93;MQRankSum=0;QD=20.08;ReadPosRankSum=-1.206;SOR=0.799;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:903,0:0,0,17,11 0/1:25,22:47:99:603,0,688:13,12,6,16 +chrX 3357965 . G A 1510 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=20.00;BaseQRankSum=0.782;DP=77;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=20.00;ReadPosRankSum=-0.79;SOR=0.622;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:918,0:0,0,12,16 0/1:25,24:49:99:622,0,642:13,12,14,10 +chrX 3358177 . C T 1345 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=17.86;BaseQRankSum=0.01;DP=82;ExcessHet=0.0000;FS=3.087;MQ=60.00;MQRankSum=0;QD=17.86;ReadPosRankSum=-0.007;SOR=0.826;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,16:16:99:556,0:0,0,8,8 0/1:30,31:61:99:819,0,799:14,16,18,13 +chrX 3358468 . G A 1544 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=20.18;BaseQRankSum=1.5;DP=85;ExcessHet=0.0000;FS=10.420;MQ=60.00;MQRankSum=0;QD=20.18;ReadPosRankSum=-1.519;SOR=1.061;VarDP=78 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:1047,0:0,0,23,9 0/1:26,20:46:99:527,0,675:10,16,9,11 +chrX 3358608 . G A 1670 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=21.79;BaseQRankSum=-1.217;DP=82;ExcessHet=0.0000;FS=8.962;MQ=59.86;MQRankSum=0;QD=21.79;ReadPosRankSum=0.193;SOR=1.230;VarDP=78 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:1062,0:0,0,13,20 0/1:21,24:45:99:638,0,560:12,9,8,16 +chrX 3358999 . G A 1633 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=18.90;BaseQRankSum=2.483;DP=93;ExcessHet=0.0000;FS=5.676;MQ=57.25;MQRankSum=-4.758;QD=18.90;ReadPosRankSum=-0.773;SOR=0.861;VarDP=88 GT:AD:DP:GQ:PL:SB 1:0,35:35:99:1121,0:0,0,19,16 0/1:32,21:53:99:542,0,773:14,18,13,8 +chrX 3360209 . A T 1666 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=19.72;BaseQRankSum=0.895;DP=88;ExcessHet=0.0000;FS=0.861;MQ=59.63;MQRankSum=-1.753;QD=19.72;ReadPosRankSum=-0.176;SOR=0.744;VarDP=86 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:958,0:0,0,16,13 0/1:29,28:57:99:738,0,728:14,15,14,14 +chrX 3360511 . G A 1864 . AC=2;AF=0.667;AN=3;AS_AltDP=64;AS_QD=19.53;BaseQRankSum=-1.417;DP=98;ExcessHet=0.0000;FS=1.748;MQ=57.39;MQRankSum=-3.319;QD=19.53;ReadPosRankSum=-0.128;SOR=0.847;VarDP=97 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:1097,0:0,0,12,21 0/1:33,31:64:99:797,0,910:17,16,17,14 +chrX 3360697 . G C 1347 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=18.12;BaseQRankSum=0.996;DP=77;ExcessHet=0.0000;FS=0.886;MQ=56.59;MQRankSum=0.237;QD=18.12;ReadPosRankSum=0.148;SOR=0.843;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:891,0:0,0,13,15 0/1:29,19:48:99:486,0,766:14,15,8,11 +chrX 3361118 . C T 972 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=31.31;DP=87;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.31;SOR=1.112;VarDP=32 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,32:32:99:.:1002,0:0,0,13,19 0/0:.:52:50:52:0,50,928 +chrX 3361200 . T A 1670 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=21.79;BaseQRankSum=-0.134;DP=82;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=21.79;ReadPosRankSum=-1.413;SOR=0.679;VarDP=78 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:1008,0:0,0,12,17 0/1:23,26:49:99:692,0,598:9,14,10,16 +chrX 3361735 . G A 1567 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=20.74;BaseQRankSum=1.366;DP=77;ExcessHet=0.0000;FS=3.377;MQ=60.00;MQRankSum=0;QD=20.74;ReadPosRankSum=0.38;SOR=1.225;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:1082,0:0,0,13,19 0/1:26,19:45:99:515,0,718:12,14,5,14 +chrX 3361783 . C T 1671 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=19.55;BaseQRankSum=2.08;DP=90;ExcessHet=0.0000;FS=0.834;MQ=60.00;MQRankSum=0;QD=19.55;ReadPosRankSum=-2.56;SOR=0.831;VarDP=87 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:1057,0:0,0,12,19 0/1:32,24:56:99:644,0,829:15,17,12,12 +chrX 3361900 . A G 1692 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=19.35;BaseQRankSum=-0.804;DP=91;ExcessHet=0.0000;FS=7.189;MQ=60.00;MQRankSum=0;QD=19.35;ReadPosRankSum=0.14;SOR=0.812;VarDP=89 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:1058,0:0,0,17,14 0/1:31,27:58:99:664,0,808:13,18,16,11 +chrX 3361960 . C A 1387 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=18.40;BaseQRankSum=1.17;DP=85;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=18.40;ReadPosRankSum=-0.763;SOR=0.612;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:800,0:0,0,12,11 0/1:30,23:53:99:617,0,807:13,17,9,14 +chrX 3362072 . A G 1983 . AC=2;AF=0.667;AN=3;AS_AltDP=65;AS_QD=23.41;BaseQRankSum=-0.876;DP=86;ExcessHet=0.0000;FS=4.818;MQ=60.00;MQRankSum=0;QD=23.41;ReadPosRankSum=-0.131;SOR=0.389;VarDP=86 GT:AD:DP:GQ:PL:SB 1:0,34:34:99:1131,0:0,0,16,18 0/1:21,31:52:99:882,0,549:13,8,16,15 +chrX 3362337 . C T 725 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=11.98;BaseQRankSum=1.321;DP=96;ExcessHet=0.0000;FS=2.122;MQ=60.00;MQRankSum=0;QD=11.98;ReadPosRankSum=-0.367;SOR=0.958;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,555 0/1:35,28:63:99:.:755,0,917:17,18,16,12 +chrX 3363308 . G A 1755 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=18.59;BaseQRankSum=0.711;DP=97;ExcessHet=0.0000;FS=1.746;MQ=60.00;MQRankSum=0;QD=18.59;ReadPosRankSum=0.794;SOR=0.502;VarDP=96 GT:AD:DP:GQ:PL:SB 1:0,39:39:99:1270,0:0,0,18,21 0/1:36,21:57:99:515,0,971:13,23,7,14 +chrX 3363478 . C G 1862 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=22.52;BaseQRankSum=0.471;DP=87;ExcessHet=0.0000;FS=6.614;MQ=60.00;MQRankSum=0;QD=22.52;ReadPosRankSum=-0.114;SOR=0.497;VarDP=84 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:1013,0:0,0,12,18 0/1:22,32:54:99:879,0,563:14,8,17,15 +chrX 3364023 . G A 2109 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=27.08;BaseQRankSum=1.001;DP=82;ExcessHet=0.0000;FS=8.095;MQ=59.79;MQRankSum=0;QD=27.08;ReadPosRankSum=-0.152;SOR=1.450;VarDP=79 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,20:20:99:.:.:888,0:.:0,0,15,5 0|1:27,32:59:99:0|1:3364023_G_A:1251,0,1037:3364023:13,14,19,13 +chrX 3364027 . G C 2101 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=26.97;BaseQRankSum=-0.622;DP=81;ExcessHet=0.0000;FS=6.333;MQ=59.79;MQRankSum=0;QD=26.97;ReadPosRankSum=-0.358;SOR=1.325;VarDP=79 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,20:20:99:.:.:880,0:.:0,0,14,6 0|1:27,32:59:99:0|1:3364023_G_A:1251,0,1037:3364023:13,14,19,13 +chrX 3364218 . C A 1701 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=19.02;BaseQRankSum=-1.631;DP=95;ExcessHet=0.0000;FS=5.732;MQ=60.00;MQRankSum=0;QD=19.02;ReadPosRankSum=-0.209;SOR=1.222;VarDP=91 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:966,0:0,0,18,12 0/1:31,30:61:99:765,0,850:15,16,19,11 +chrX 3364359 . G A 1951 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=23.31;BaseQRankSum=1.722;DP=87;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=23.31;ReadPosRankSum=-0.794;SOR=0.637;VarDP=85 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:1062,0:0,0,14,18 0/1:22,31:53:99:919,0,556:9,13,13,18 +chrX 3364713 . G A 2047 . AC=2;AF=0.667;AN=3;AS_AltDP=50;AS_QD=28.45;BaseQRankSum=-1.569;DP=78;ExcessHet=0.0000;FS=2.201;MQ=59.94;MQRankSum=0;QD=28.45;ReadPosRankSum=-0.083;SOR=0.394;VarDP=73 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,25:25:99:.:.:1102,0:.:0,0,15,10 0|1:23,25:48:99:0|1:3364713_G_A:975,0,879:3364713:16,7,15,10 +chrX 3364715 . G C 2047 . AC=2;AF=0.667;AN=3;AS_AltDP=50;AS_QD=28.45;BaseQRankSum=-1.904;DP=73;ExcessHet=0.0000;FS=2.201;MQ=59.93;MQRankSum=0;QD=28.45;ReadPosRankSum=-0.245;SOR=0.394;VarDP=73 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,25:25:99:.:.:1102,0:.:0,0,15,10 0|1:23,25:48:99:0|1:3364713_G_A:975,0,879:3364713:16,7,15,10 +chrX 3364716 . C T 2050 . AC=2;AF=0.667;AN=3;AS_AltDP=50;AS_QD=28.89;BaseQRankSum=-1.977;DP=72;ExcessHet=0.0000;FS=3.713;MQ=59.93;MQRankSum=0;QD=28.89;ReadPosRankSum=-0.181;SOR=0.314;VarDP=72 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,25:25:99:.:.:1102,0:.:0,0,15,10 0|1:22,25:47:99:0|1:3364713_G_A:978,0,849:3364713:16,6,15,10 +chrX 3365118 . A T 2066 . AC=2;AF=0.667;AN=3;AS_AltDP=70;AS_QD=21.17;BaseQRankSum=1.669;DP=100;ExcessHet=0.0000;FS=2.908;MQ=60.00;MQRankSum=0;QD=21.17;ReadPosRankSum=-0.683;SOR=0.443;VarDP=99 GT:AD:DP:GQ:PL:SB 1:0,40:40:99:1275,0:0,0,18,22 0/1:29,30:59:99:821,0,735:11,18,14,16 +chrX 3365166 . A G 1515 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=16.44;BaseQRankSum=1.091;DP=96;ExcessHet=0.0000;FS=8.360;MQ=60.00;MQRankSum=0;QD=16.44;ReadPosRankSum=0.544;SOR=0.605;VarDP=94 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:922,0:0,0,15,15 0/1:39,25:64:99:623,0,1022:15,24,15,10 +chrX 3368939 . T TA 1102.97 . AC=2;AF=0.667;AN=3;AS_AltDP=46;AS_QD=15.64;BaseQRankSum=2.925;DP=85;ExcessHet=0.0000;FS=6.306;MQ=59.94;MQRankSum=0;QD=15.64;ReadPosRankSum=0.253;SOR=0.441;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:646,0:0,0,11,12 0/1:27,23:50:99:496,0,611:10,17,13,10 +chrX 3371723 . C T 1453 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=18.54;BaseQRankSum=0.867;DP=82;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=18.54;ReadPosRankSum=-1.265;SOR=0.672;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:1022,0:0,0,17,15 0/1:29,19:48:99:461,0,764:15,14,8,11 +chrX 3372600 . T A 1671 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=22.38;BaseQRankSum=2.053;DP=80;ExcessHet=0.0000;FS=1.003;MQ=60.00;MQRankSum=0;QD=22.38;ReadPosRankSum=1.051;SOR=0.542;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,19:19:99:651,0:0,0,8,11 0/1:21,36:57:99:1050,0,482:7,14,13,23 +chrX 3373551 . C T 1077 . AC=2;AF=0.667;AN=3;AS_AltDP=39;AS_QD=15.59;BaseQRankSum=-1.872;DP=73;ExcessHet=0.0000;FS=1.942;MQ=60.00;MQRankSum=0;QD=15.59;ReadPosRankSum=-0.096;SOR=0.946;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:829,0:0,0,9,16 0/1:32,14:46:99:278,0,903:15,17,7,7 +chrX 3375709 . A G 1220 . AC=2;AF=0.667;AN=3;AS_AltDP=41;AS_QD=19.53;BaseQRankSum=-0.452;DP=68;ExcessHet=0.0000;FS=7.140;MQ=59.71;MQRankSum=-0.032;QD=19.53;ReadPosRankSum=0.659;SOR=0.864;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,19:19:99:661,0:0,0,8,11 0/1:23,22:45:99:589,0,634:14,9,9,13 +chrX 3376246 . T C 1711 . AC=3;AF=1.00;AN=3;AS_AltDP=55;AS_QD=31.65;DP=57;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.65;SOR=1.061;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,11:11:99:362,0:0,0,6,5 1/1:0,44:44:99:1379,132,0:0,0,17,27 +chrX 3376964 . C T 1618 . AC=3;AF=1.00;AN=3;AS_AltDP=50;AS_QD=32.96;DP=52;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.96;SOR=0.773;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:1072,0:0,0,18,14 1/1:0,18:18:54:576,54,0:0,0,6,12 +chrX 3376976 . G A 1632 . AC=3;AF=1.00;AN=3;AS_AltDP=51;AS_QD=32.59;DP=52;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.59;SOR=0.732;VarDP=51 GT:AD:DP:GQ:PL:SB 1:0,34:34:99:1142,0:0,0,21,13 1/1:0,17:17:50:520,50,0:0,0,5,12 +chrX 3377026 . C T 1583 . AC=3;AF=1.00;AN=3;AS_AltDP=49;AS_QD=32.92;DP=51;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.92;SOR=0.818;VarDP=49 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:864,0:0,0,13,13 1/1:0,23:23:69:749,69,0:0,0,13,10 +chrX 3377154 . G C 1429 . AC=3;AF=1.00;AN=3;AS_AltDP=45;AS_QD=32.42;DP=47;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.42;SOR=0.829;VarDP=45 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:834,0:0,0,8,18 1/1:0,19:19:57:625,57,0:0,0,13,6 +chrX 3377490 . CA C 969.97 . AC=3;AF=1.00;AN=3;AS_AltDP=39;AS_QD=25.87;DP=55;ExcessHet=0.0000;FS=0.000;MQ=59.70;QD=25.87;SOR=1.096;VarDP=39 GT:AD:DP:GQ:PL:SB 1:0,19:19:99:500,0:0,0,10,9 1/1:0,20:20:60:509,60,0:0,0,13,7 +chrX 3377715 . ATG A 2090.97 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=28.03;BaseQRankSum=0.091;DP=86;ExcessHet=0.0000;FS=3.224;MQ=59.78;MQRankSum=0;QD=28.03;ReadPosRankSum=1.0;SOR=0.412;VarDP=76 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,26:26:99:.:.:1159,0:.:0,0,14,12 0|1:25,25:50:99:0|1:3377715_ATG_A:971,0,955:3377715:15,10,12,13 +chrX 3377735 . GTGTGTA G 2216.97 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=27.51;BaseQRankSum=0.07;DP=84;ExcessHet=0.0000;FS=0.895;MQ=60.00;MQRankSum=0;QD=27.51;ReadPosRankSum=-0.084;SOR=0.536;VarDP=82 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,27:27:99:.:.:1198,0:.:0,0,15,12 0|1:27,28:55:99:0|1:3377715_ATG_A:1058,0,1044:3377715:16,11,15,13 +chrX 3377928 . CGT C 1833.97 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=22.04;BaseQRankSum=-0.078;DP=98;ExcessHet=0.0000;FS=1.845;MQ=59.95;MQRankSum=0;QD=22.04;ReadPosRankSum=0.872;SOR=0.501;VarDP=85 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:941,0:0,0,9,16 0/1:31,29:60:99:932,0,996:12,19,15,14 +chrX 3377990 . T C 1862 . AC=2;AF=0.667;AN=3;AS_AltDP=65;AS_QD=18.37;BaseQRankSum=-2.149;DP=108;ExcessHet=0.0000;FS=6.610;MQ=60.00;MQRankSum=0;QD=18.37;ReadPosRankSum=-0.79;SOR=0.298;VarDP=103 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:1049,0:0,0,17,15 0/1:38,33:71:99:843,0,1074:13,25,14,19 +chrX 3378029 . C T 1702 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=17.67;BaseQRankSum=-0.377;DP=104;ExcessHet=0.0000;FS=0.765;MQ=60.00;MQRankSum=0;QD=17.67;ReadPosRankSum=0.582;SOR=0.804;VarDP=98 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:941,0:0,0,16,12 0/1:40,30:70:99:791,0,1121:19,21,10,20 +chrX 3378682 . A G 1218 . AC=2;AF=0.667;AN=3;AS_AltDP=43;AS_QD=17.33;BaseQRankSum=-0.06;DP=72;ExcessHet=0.0000;FS=6.312;MQ=60.00;MQRankSum=0;QD=17.33;ReadPosRankSum=-0.338;SOR=0.534;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:767,0:0,0,11,13 0/1:29,19:48:99:481,0,834:11,18,12,7 +chrX 3378816 . G C 1447 . AC=2;AF=0.667;AN=3;AS_AltDP=50;AS_QD=21.10;BaseQRankSum=-1.919;DP=71;ExcessHet=0.0000;FS=9.388;MQ=60.00;MQRankSum=0;QD=21.10;ReadPosRankSum=-1.516;SOR=1.112;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,20:20:99:665,0:0,0,16,4 0/1:20,30:50:99:812,0,535:8,12,15,15 +chrX 3379463 . A G 1486 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=19.69;BaseQRankSum=-0.292;DP=80;ExcessHet=0.0000;FS=2.030;MQ=60.00;MQRankSum=0;QD=19.69;ReadPosRankSum=0.246;SOR=0.976;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,22:22:99:679,0:0,0,12,10 0/1:24,31:55:99:837,0,628:13,11,20,11 +chrX 3379660 . G A 814 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=30.14;BaseQRankSum=1.66;DP=77;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=30.14;ReadPosRankSum=0.124;SOR=0.252;VarDP=28 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,27:28:99:.:844,0:1,0,14,13 0/0:.:47:58:47:0,58,968 +chrX 3379826 . A AT 405.97 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=10.85;BaseQRankSum=1.38;DP=76;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=10.85;ReadPosRankSum=0.653;SOR=0.610;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,768 0/1:21,20:41:99:.:445,0,478:11,10,10,10 +chrX 3380180 . T C 2033 . AC=2;AF=0.667;AN=3;AS_AltDP=67;AS_QD=21.95;BaseQRankSum=3.575;DP=101;ExcessHet=0.0000;FS=3.012;MQ=60.00;MQRankSum=0;QD=21.95;ReadPosRankSum=0.476;SOR=0.424;VarDP=94 GT:AD:DP:GQ:PL:SB 1:0,34:34:99:1097,0:0,0,18,16 0/1:27,33:60:99:966,0,653:11,16,15,18 +chrX 3380779 . A G 1863 . AC=2;AF=0.667;AN=3;AS_AltDP=65;AS_QD=22.81;BaseQRankSum=-1.116;DP=87;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=22.81;ReadPosRankSum=-0.394;SOR=0.744;VarDP=83 GT:AD:DP:GQ:PL:SB 1:0,34:34:99:1092,0:0,0,12,22 0/1:18,31:49:99:801,0,435:7,11,13,18 +chrX 3380856 . T C 2062 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=27.53;BaseQRankSum=-2.643;DP=78;ExcessHet=0.0000;FS=4.783;MQ=60.00;MQRankSum=0;QD=27.53;ReadPosRankSum=-0.66;SOR=0.317;VarDP=76 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,29:29:99:.:.:1264,0:.:0,0,14,15 0|1:25,22:47:99:0|1:3380856_T_C:828,0,973:3380856:9,16,11,11 +chrX 3380870 . C T 2011 . AC=2;AF=0.667;AN=3;AS_AltDP=49;AS_QD=26.17;BaseQRankSum=-0.837;DP=78;ExcessHet=0.0000;FS=1.927;MQ=60.00;MQRankSum=0;QD=26.17;ReadPosRankSum=-1.331;SOR=0.859;VarDP=78 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,27:27:99:.:.:1215,0:.:0,0,14,13 0|1:29,22:51:99:0|1:3380856_T_C:826,0,1131:3380856:14,15,13,9 +chrX 3380893 . A G 1627 . AC=2;AF=0.667;AN=3;AS_AltDP=42;AS_QD=23.67;BaseQRankSum=-2.828;DP=72;ExcessHet=0.0000;FS=2.019;MQ=60.00;MQRankSum=0;QD=23.67;ReadPosRankSum=-2.787;SOR=1.005;VarDP=70 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,23:23:99:.:.:1015,0:.:0,0,14,9 0|1:28,19:47:99:0|1:3380856_T_C:642,0,1098:3380856:14,14,10,9 +chrX 3380992 . G A 405 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=7.37;BaseQRankSum=0.867;DP=87;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=7.37;ReadPosRankSum=-1.114;SOR=0.836;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:26:99:26:0,565 0/1:39,20:59:99:.:435,0,939:20,19,11,9 +chrX 3381685 . A G 1591 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=19.77;BaseQRankSum=0.754;DP=85;ExcessHet=0.0000;FS=6.242;MQ=60.00;MQRankSum=0;QD=19.77;ReadPosRankSum=-0.723;SOR=0.260;VarDP=82 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:759,0:0,0,11,12 0/1:27,32:59:99:862,0,663:18,9,17,15 +chrX 3381947 . C CAAA 1189.97 . AC=2;AF=0.667;AN=3;AS_AltDP=40;AS_QD=24.58;BaseQRankSum=-1.603;DP=77;ExcessHet=0.0000;FS=11.322;MQ=58.74;MQRankSum=-1.09;QD=24.58;ReadPosRankSum=-3.112;SOR=0.636;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,15:15:99:530,0:0,0,7,8 0/1:10,25:35:99:699,0,257:8,2,10,15 +chrX 3382254 . G A 1934 . AC=2;AF=0.667;AN=3;AS_AltDP=65;AS_QD=23.38;BaseQRankSum=-0.051;DP=90;ExcessHet=0.0000;FS=14.252;MQ=59.80;MQRankSum=0;QD=23.38;ReadPosRankSum=-0.575;SOR=0.894;VarDP=84 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:982,0:0,0,14,17 0/1:19,34:53:99:982,0,466:13,6,12,22 +chrX 3382292 . AAAG A 2536.97 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=29.27;BaseQRankSum=-0.819;DP=89;ExcessHet=0.0000;FS=4.445;MQ=59.80;MQRankSum=0;QD=29.27;ReadPosRankSum=0.107;SOR=0.360;VarDP=88 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,32:32:99:.:.:1440,0:.:0,0,16,16 0|1:27,29:56:99:0|1:3382292_AAAG_A:1136,0,1046:3382292:18,9,18,11 +chrX 3382296 . T TC 2536.97 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=29.27;BaseQRankSum=-1.318;DP=90;ExcessHet=0.0000;FS=4.445;MQ=59.80;MQRankSum=0;QD=29.27;ReadPosRankSum=-0.074;SOR=0.360;VarDP=88 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,32:32:99:.:.:1440,0:.:0,0,16,16 0|1:27,29:56:99:0|1:3382292_AAAG_A:1136,0,1046:3382292:18,9,18,11 +chrX 3382436 . C A 1591 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=20.26;BaseQRankSum=-1.138;DP=82;ExcessHet=0.0000;FS=4.623;MQ=60.00;MQRankSum=0;QD=20.26;ReadPosRankSum=-2.174;SOR=0.336;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:1117,0:0,0,16,17 0/1:27,20:47:99:504,0,752:9,18,8,12 +chrX 3382567 . G A 1941 . AC=2;AF=0.667;AN=3;AS_AltDP=68;AS_QD=18.95;BaseQRankSum=0.619;DP=105;ExcessHet=0.0000;FS=0.768;MQ=59.96;MQRankSum=-1.102;QD=18.95;ReadPosRankSum=-0.589;SOR=0.814;VarDP=104 GT:AD:DP:GQ:PL:SB 1:0,40:40:99:1244,0:0,0,20,20 0/1:36,28:64:99:727,0,945:18,18,16,12 +chrX 3382918 . A G 1630 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=21.56;BaseQRankSum=1.075;DP=79;ExcessHet=0.0000;FS=0.949;MQ=60.00;MQRankSum=0;QD=21.56;ReadPosRankSum=0.361;SOR=0.781;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:923,0:0,0,15,13 0/1:23,26:49:99:737,0,597:12,11,10,16 +chrX 3385096 . T C 1456 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=18.58;BaseQRankSum=-1.333;DP=83;ExcessHet=0.0000;FS=3.218;MQ=60.00;MQRankSum=0;QD=18.58;ReadPosRankSum=-0.352;SOR=1.106;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:734,0:0,0,14,9 0/1:27,30:57:99:752,0,713:15,12,20,10 +chrX 3385371 . G A 1802 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=22.34;BaseQRankSum=2.236;DP=86;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=22.34;ReadPosRankSum=-0.383;SOR=0.712;VarDP=82 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:864,0:0,0,14,12 0/1:23,33:56:99:968,0,565:11,12,14,19 +chrX 3385506 . T A 1290 . AC=2;AF=0.667;AN=3;AS_AltDP=43;AS_QD=20.95;BaseQRankSum=2.165;DP=65;ExcessHet=0.0000;FS=1.035;MQ=60.00;MQRankSum=0;QD=20.95;ReadPosRankSum=-0.29;SOR=0.581;VarDP=63 GT:AD:DP:GQ:PL:SB 1:1,23:24:99:742,0:1,0,15,8 0/1:19,20:39:99:578,0,502:8,11,7,13 +chrX 3385678 . T TGATA 1837.97 . AC=2;AF=0.667;AN=3;AS_AltDP=46;AS_QD=27.20;BaseQRankSum=-1.523;DP=73;ExcessHet=0.0000;FS=0.962;MQ=60.00;MQRankSum=0;QD=27.20;ReadPosRankSum=-1.289;SOR=0.548;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:1169,0:0,0,13,14 0/1:23,19:42:99:708,0,897:10,13,9,10 +chrX 3386722 . C T 2166 . AC=2;AF=0.667;AN=3;AS_AltDP=71;AS_QD=23.61;BaseQRankSum=-0.844;DP=96;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=23.61;ReadPosRankSum=-0.219;SOR=0.779;VarDP=93 GT:AD:DP:GQ:PL:SB 1:0,42:42:99:1406,0:0,0,19,23 0/1:22,29:51:99:790,0,592:11,11,18,11 +chrX 3386942 . C T 1936 . AC=2;AF=0.667;AN=3;AS_AltDP=65;AS_QD=22.86;BaseQRankSum=0.968;DP=86;ExcessHet=0.0000;FS=6.727;MQ=59.94;MQRankSum=0;QD=22.86;ReadPosRankSum=2.02;SOR=0.660;VarDP=86 GT:AD:DP:GQ:PL:SB 1:0,35:35:99:1131,0:0,0,19,16 0/1:21,30:51:99:835,0,511:8,13,17,13 +chrX 3387414 . A ATG 2246.97 . AC=2;AF=0.667;AN=3;AS_AltDP=65;AS_QD=24.06;BaseQRankSum=-0.557;DP=103;ExcessHet=0.0000;FS=1.792;MQ=59.72;MQRankSum=0;QD=24.06;ReadPosRankSum=-0.377;SOR=0.920;VarDP=95 GT:AD:DP:GQ:PL:SB 1:0,35:35:99:1337,0:0,0,11,24 0/1:30,30:60:99:949,0,990:14,16,16,14 +chrX 3387543 . GTA G 1430.97 . AC=2;AF=0.667;AN=3;AS_AltDP=37;AS_QD=21.94;BaseQRankSum=-0.015;DP=76;ExcessHet=0.0000;FS=2.017;MQ=59.39;MQRankSum=0.838;QD=21.94;ReadPosRankSum=0.137;SOR=0.984;VarDP=67 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,18:18:99:.:.:775,0:.:0,0,7,11 0|1:30,19:49:99:0|1:3387543_GTA_G:695,0,1166:3387543:15,15,9,10 +chrX 3387566 . T C 1558 . AC=2;AF=0.667;AN=3;AS_AltDP=42;AS_QD=21.46;BaseQRankSum=1.763;DP=79;ExcessHet=0.0000;FS=4.504;MQ=59.47;MQRankSum=0.881;QD=21.46;ReadPosRankSum=-0.744;SOR=0.524;VarDP=74 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,20:21:99:.:.:823,0:.:1,0,9,11 0|1:31,22:53:99:0|1:3387543_GTA_G:765,0,1175:3387543:18,13,11,11 +chrX 3387669 . A ATG 1769.97 . AC=2;AF=0.667;AN=3;AS_AltDP=44;AS_QD=27.83;BaseQRankSum=-1.291;DP=71;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=27.83;ReadPosRankSum=0.949;SOR=0.795;VarDP=65 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,25:25:99:.:.:1097,0:.:0,0,17,8 0|1:21,19:40:99:0|1:3387669_A_ATG:712,0,791:3387669:14,7,13,6 +chrX 3387694 . T C 1969 . AC=2;AF=0.667;AN=3;AS_AltDP=50;AS_QD=27.76;BaseQRankSum=-2.865;DP=75;ExcessHet=0.0000;FS=2.476;MQ=60.00;MQRankSum=0;QD=27.76;ReadPosRankSum=-0.824;SOR=1.179;VarDP=72 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,30:30:99:.:.:1272,0:.:0,0,23,7 0|1:22,20:42:99:0|1:3387669_A_ATG:727,0,807:3387669:15,7,15,5 +chrX 3387783 . G A 2129 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=28.04;BaseQRankSum=-1.827;DP=81;ExcessHet=0.0000;FS=14.687;MQ=60.00;MQRankSum=0;QD=28.04;ReadPosRankSum=1.096;SOR=0.089;VarDP=77 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,36:36:99:.:.:1423,0:.:0,0,17,19 0|1:20,21:41:99:0|1:3387783_G_A:736,0,716:3387783:16,4,12,9 +chrX 3387801 . ATG A 2278.97 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=27.60;BaseQRankSum=0.45;DP=84;ExcessHet=0.0000;FS=4.685;MQ=59.80;MQRankSum=0.939;QD=27.60;ReadPosRankSum=1.355;SOR=0.314;VarDP=84 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,39:39:99:.:.:1619,0:.:0,0,19,20 0|1:25,20:45:99:0|1:3387783_G_A:699,0,901:3387783:16,9,11,9 +chrX 3387821 . T G 2357 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=28.08;BaseQRankSum=1.601;DP=86;ExcessHet=0.0000;FS=4.690;MQ=59.81;MQRankSum=0.981;QD=28.08;ReadPosRankSum=0.284;SOR=0.297;VarDP=85 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,38:38:99:.:.:1624,0:.:0,0,16,22 0|1:25,22:47:99:0|1:3387783_G_A:763,0,874:3387783:16,9,14,8 +chrX 3388067 . T C 1557 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=16.71;BaseQRankSum=-1.319;DP=101;ExcessHet=0.0000;FS=3.915;MQ=60.00;MQRankSum=0;QD=16.71;ReadPosRankSum=0.416;SOR=0.730;VarDP=95 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:801,0:0,0,17,9 0/1:38,31:69:99:786,0,1059:17,21,14,17 +chrX 3389324 . C T 1516 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=18.63;BaseQRankSum=0.041;DP=84;ExcessHet=0.0000;FS=4.462;MQ=60.00;MQRankSum=0;QD=18.63;ReadPosRankSum=-0.047;SOR=1.270;VarDP=83 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:1012,0:0,0,19,12 0/1:31,21:52:99:534,0,861:16,15,14,7 +chrX 3389754 . A G 1994 . AC=2;AF=0.667;AN=3;AS_AltDP=66;AS_QD=23.81;BaseQRankSum=-0.367;DP=87;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=23.81;ReadPosRankSum=1.64;SOR=0.589;VarDP=85 GT:AD:DP:GQ:PL:SB 1:1,36:37:99:1156,0:1,0,19,17 0/1:18,30:48:99:868,0,481:10,8,17,13 +chrX 3390046 . T C 1581 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=18.95;BaseQRankSum=0.357;DP=88;ExcessHet=0.0000;FS=0.848;MQ=60.00;MQRankSum=0;QD=18.95;ReadPosRankSum=1.375;SOR=0.822;VarDP=85 GT:AD:DP:GQ:PL:SB 1:1,28:29:99:873,0:0,1,13,15 0/1:29,27:56:99:738,0,784:16,13,18,9 +chrX 3390173 . A G 1956 . AC=2;AF=0.667;AN=3;AS_AltDP=65;AS_QD=22.83;BaseQRankSum=-1.823;DP=92;ExcessHet=0.0000;FS=3.301;MQ=60.00;MQRankSum=0;QD=22.83;ReadPosRankSum=1.295;SOR=0.452;VarDP=87 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:991,0:0,0,17,13 0/1:22,35:57:99:995,0,593:9,13,16,19 +chrX 3390718 . T A 1284 . AC=2;AF=0.667;AN=3;AS_AltDP=42;AS_QD=20.22;BaseQRankSum=0.27;DP=67;ExcessHet=0.0000;FS=0.978;MQ=60.00;MQRankSum=0;QD=20.22;ReadPosRankSum=-1.82;SOR=0.719;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:800,0:0,0,10,13 0/1:23,19:42:99:514,0,643:11,12,12,7 +chrX 3390831 . G A 1419 . AC=2;AF=0.667;AN=3;AS_AltDP=46;AS_QD=22.64;BaseQRankSum=0;DP=65;ExcessHet=0.0000;FS=2.407;MQ=60.00;MQRankSum=0;QD=22.64;ReadPosRankSum=0.271;SOR=1.203;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:1027,0:0,0,12,19 0/1:18,15:33:99:422,0,526:9,9,6,9 +chrX 3391177 . G C 1584 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=16.14;BaseQRankSum=0.162;DP=104;ExcessHet=0.0000;FS=2.689;MQ=60.00;MQRankSum=0;QD=16.14;ReadPosRankSum=0.324;SOR=1.029;VarDP=100 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:837,0:0,0,17,11 0/1:41,31:72:99:777,0,1094:22,19,19,12 +chrX 3391723 . A G 1721 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=19.24;BaseQRankSum=0.152;DP=97;ExcessHet=0.0000;FS=2.967;MQ=60.00;MQRankSum=0;QD=19.24;ReadPosRankSum=-1.548;SOR=0.596;VarDP=91 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:872,0:0,0,13,14 0/1:30,34:64:99:879,0,765:13,17,19,15 +chrX 3391901 . T G 1481 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=18.65;BaseQRankSum=1.401;DP=83;ExcessHet=0.0000;FS=3.060;MQ=59.94;MQRankSum=0;QD=18.65;ReadPosRankSum=-0.155;SOR=0.430;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,19:19:99:640,0:0,0,12,7 0/1:29,33:62:99:871,0,678:18,11,16,17 +chrX 3392003 . CAAAA C 329.97 . AC=1;AF=0.333;AN=3;AS_AltDP=10;AS_QD=26.36;BaseQRankSum=0;DP=64;ExcessHet=0.0000;FS=10.227;MQ=58.68;MQRankSum=0;QD=26.36;ReadPosRankSum=0.316;SOR=2.225;VarDP=14 GT:AD:DP:GQ:MIN_DP:PL:SB 1:4,10:14:99:.:369,0:1,3,8,2 0/0:.:37:0:37:0,0,705 +chrX 3392297 . C T 1827 . AC=2;AF=0.667;AN=3;AS_AltDP=64;AS_QD=22.11;BaseQRankSum=-0.669;DP=86;ExcessHet=0.0000;FS=9.238;MQ=60.00;MQRankSum=0;QD=22.11;ReadPosRankSum=-0.512;SOR=0.165;VarDP=84 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:1047,0:0,0,18,15 0/1:20,31:51:99:810,0,498:5,15,12,19 +chrX 3392768 . C G 1483 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=18.23;BaseQRankSum=-0.726;DP=85;ExcessHet=0.0000;FS=4.348;MQ=60.00;MQRankSum=0;QD=18.23;ReadPosRankSum=0.468;SOR=0.352;VarDP=83 GT:AD:DP:GQ:PL:SB 1:0,20:20:99:655,0:0,0,8,12 0/1:31,32:63:99:858,0,858:12,19,18,14 +chrX 3392838 . T A 1529 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=18.56;BaseQRankSum=-0.719;DP=86;ExcessHet=0.0000;FS=0.863;MQ=60.00;MQRankSum=0;QD=18.56;ReadPosRankSum=-1.48;SOR=0.529;VarDP=84 GT:AD:DP:GQ:PL:SB 1:0,20:20:99:655,0:0,0,9,11 0/1:30,34:64:99:904,0,796:13,17,17,17 +chrX 3393082 . A C 1585 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=17.55;BaseQRankSum=0.416;DP=94;ExcessHet=0.0000;FS=5.415;MQ=60.00;MQRankSum=0;QD=17.55;ReadPosRankSum=-0.147;SOR=0.945;VarDP=92 GT:AD:DP:GQ:PL:SB 1:0,20:20:99:615,0:0,0,12,8 0/1:35,37:72:99:1000,0,911:19,16,12,25 +chrX 3393438 . G A 1964 . AC=2;AF=0.667;AN=3;AS_AltDP=66;AS_QD=19.94;BaseQRankSum=-0.183;DP=101;ExcessHet=0.0000;FS=0.795;MQ=60.00;MQRankSum=0;QD=19.94;ReadPosRankSum=-2.181;SOR=0.542;VarDP=100 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:1023,0:0,0,14,16 0/1:34,36:70:99:971,0,911:15,19,18,18 +chrX 3393680 . A G 1654 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=20.29;BaseQRankSum=0.545;DP=86;ExcessHet=0.0000;FS=3.109;MQ=60.00;MQRankSum=0;QD=20.29;ReadPosRankSum=-0.277;SOR=1.078;VarDP=83 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:953,0:0,0,10,19 0/1:28,26:54:99:731,0,790:13,15,11,15 +chrX 3394371 . C T 1825 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=21.82;BaseQRankSum=0.877;DP=86;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=21.82;ReadPosRankSum=1.372;SOR=0.684;VarDP=85 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:839,0:0,0,12,13 0/1:25,35:60:99:1016,0,658:12,13,17,18 +chrX 3394893 . G T 1742 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=21.10;BaseQRankSum=0.649;DP=88;ExcessHet=0.0000;FS=4.604;MQ=60.00;MQRankSum=0;QD=21.10;ReadPosRankSum=0.378;SOR=0.997;VarDP=84 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:918,0:0,0,15,13 0/1:26,30:56:99:854,0,705:12,14,19,11 +chrX 3395823 . T C 1323 . AC=2;AF=0.667;AN=3;AS_AltDP=48;AS_QD=16.11;BaseQRankSum=-0.279;DP=85;ExcessHet=0.0000;FS=5.550;MQ=60.00;MQRankSum=0;QD=16.11;ReadPosRankSum=-0.618;SOR=0.646;VarDP=84 GT:AD:DP:GQ:PL:SB 1:0,18:18:99:568,0:0,0,8,10 0/1:36,30:66:99:785,0,973:15,21,18,12 +chrX 3396304 . G A 1258 . AC=2;AF=0.667;AN=3;AS_AltDP=45;AS_QD=16.73;BaseQRankSum=-1.066;DP=77;ExcessHet=0.0000;FS=1.992;MQ=60.00;MQRankSum=0;QD=16.73;ReadPosRankSum=-0.263;SOR=0.466;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:789,0:0,0,15,10 0/1:32,20:52:99:499,0,923:22,10,13,7 +chrX 3396423 . C T 1760 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=18.08;BaseQRankSum=-0.011;DP=101;ExcessHet=0.0000;FS=1.673;MQ=60.00;MQRankSum=0;QD=18.08;ReadPosRankSum=-0.958;SOR=0.527;VarDP=99 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:992,0:0,0,14,17 0/1:38,30:68:99:798,0,1065:15,23,13,17 +chrX 3396445 . C T 1647 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=17.47;BaseQRankSum=1.704;DP=104;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=17.47;ReadPosRankSum=-1.299;SOR=0.693;VarDP=96 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:967,0:0,0,13,18 0/1:38,27:65:99:710,0,992:15,23,10,17 +chrX 3396462 . T TG 1718.97 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=17.94;BaseQRankSum=0.56;DP=103;ExcessHet=0.0000;FS=2.767;MQ=60.00;MQRankSum=0;QD=17.94;ReadPosRankSum=0.404;SOR=0.430;VarDP=98 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:1062,0:0,0,16,17 0/1:37,28:65:99:696,0,1018:14,23,12,16 +chrX 3397324 . C A 1925 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=19.95;BaseQRankSum=1.507;DP=102;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=19.95;ReadPosRankSum=0.818;SOR=0.732;VarDP=98 GT:AD:DP:GQ:PL:SB 1:0,38:38:99:1291,0:0,0,17,21 0/1:35,25:60:99:664,0,962:17,18,13,12 +chrX 3397882 . G A 1484 . AC=2;AF=0.667;AN=3;AS_AltDP=48;AS_QD=21.32;BaseQRankSum=2.446;DP=73;ExcessHet=0.0000;FS=0.957;MQ=60.00;MQRankSum=0;QD=21.32;ReadPosRankSum=0.901;SOR=0.545;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:947,0:0,0,15,13 0/1:23,20:43:99:567,0,565:13,10,10,10 +chrX 3397986 . G A 1865 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=22.56;BaseQRankSum=-0.268;DP=86;ExcessHet=0.0000;FS=2.076;MQ=60.00;MQRankSum=0;QD=22.56;ReadPosRankSum=0.909;SOR=0.412;VarDP=84 GT:AD:DP:GQ:PL:SB 1:0,34:34:99:1132,0:0,0,20,14 0/1:22,28:50:99:763,0,574:9,13,11,17 +chrX 3398449 . A G 2014 . AC=2;AF=0.667;AN=3;AS_AltDP=71;AS_QD=22.22;BaseQRankSum=-2.47;DP=93;ExcessHet=0.0000;FS=6.798;MQ=60.00;MQRankSum=0;QD=22.22;ReadPosRankSum=1.238;SOR=0.225;VarDP=92 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:952,0:0,0,16,15 0/1:21,40:61:99:1092,0,547:15,6,22,18 +chrX 3398810 . A G 1387 . AC=2;AF=0.667;AN=3;AS_AltDP=49;AS_QD=19.41;BaseQRankSum=-1.948;DP=73;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=19.41;ReadPosRankSum=-1.059;SOR=0.818;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:744,0:0,0,12,11 0/1:24,26:50:99:673,0,663:12,12,11,15 +chrX 3398980 . G GTT 3499.97 . AC=3;AF=1.00;AN=3;AS_AltDP=79;AS_QD=32.40;DP=81;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.80;SOR=0.718;VarDP=79 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:1305,0:0,0,19,10 1/1:0,50:50:99:2234,150,0:0,0,20,30 +chrX 3401406 . T C 1994 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=24.99;BaseQRankSum=-0.308;DP=82;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=24.99;ReadPosRankSum=1.614;SOR=0.723;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:1114,0:0,0,12,15 0/1:29,25:54:99:910,0,1040:13,16,11,14 +chrX 3401412 . CT C,CTT 2472.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=50,22;AS_QD=29.80,25.32;DP=77;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=34.89;SOR=0.749;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:1038,0,1038:0,0,12,13 1/2:0,25,22:47:99:1474,554,976,983,0,917:0,0,23,24 +chrX 3406980 . C T 1923 . AC=2;AF=0.667;AN=3;AS_AltDP=65;AS_QD=22.98;BaseQRankSum=1.494;DP=90;ExcessHet=0.0000;FS=8.828;MQ=60.00;MQRankSum=0;QD=22.98;ReadPosRankSum=1.099;SOR=0.984;VarDP=85 GT:AD:DP:GQ:PL:SB 1:0,36:36:99:1131,0:0,0,22,14 0/1:20,29:49:99:822,0,458:8,12,17,12 +chrX 3408901 . TACAC T,TACACAC 1400.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=29,11;AS_QD=33.24,25.17;BaseQRankSum=-0.38;DP=68;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=35.12;ReadPosRankSum=0.435;SOR=0.432;VarDP=41 GT:AD:DP:GQ:PL:SB 1:1,11,0:12:99:462,0,485:1,0,6,5 1/2:0,18,11:29:99:978,286,449,713,0,676:0,0,18,11 +chrX 3409917 . A C 727 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=14.02;BaseQRankSum=0.534;DP=81;ExcessHet=0.0000;FS=3.828;MQ=60.00;MQRankSum=0;QD=14.02;ReadPosRankSum=0.182;SOR=0.821;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:27:99:27:0,447 0/1:26,28:54:99:.:757,0,662:11,15,16,12 +chrX 3411233 . G A 822 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=15.49;BaseQRankSum=-0.582;DP=82;ExcessHet=0.0000;FS=0.000;MQ=59.95;MQRankSum=-0.843;QD=15.49;ReadPosRankSum=1.036;SOR=0.655;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:27:99:27:0,447 0/1:24,31:55:99:.:852,0,624:9,15,12,19 +chrX 3411552 . C T 1084 . AC=2;AF=0.667;AN=3;AS_AltDP=40;AS_QD=17.68;BaseQRankSum=0;DP=68;ExcessHet=0.0000;FS=2.216;MQ=59.72;MQRankSum=0;QD=17.68;ReadPosRankSum=-0.211;SOR=0.967;VarDP=63 GT:AD:DP:GQ:PL:SB 1:1,13:14:99:392,0:1,0,9,4 0/1:22,27:49:99:722,0,571:10,12,14,13 +chrX 3413804 . G A 1701 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=20.61;BaseQRankSum=2.472;DP=85;ExcessHet=0.0000;FS=0.000;MQ=52.47;MQRankSum=1.878;QD=20.61;ReadPosRankSum=0.651;SOR=0.762;VarDP=84 GT:AD:DP:GQ:PL:SB 1:1,27:28:99:844,0:0,1,15,12 0/1:25,31:56:99:887,0,620:13,12,15,16 +chrX 3414186 . C T 520 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=10.38;BaseQRankSum=-3.257;DP=83;ExcessHet=0.0000;FS=5.528;MQ=60.00;MQRankSum=0;QD=10.38;ReadPosRankSum=-0.314;SOR=0.428;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,675 0/1:30,23:53:99:.:550,0,874:11,19,12,11 +chrX 3414747 . G A 1931 . AC=2;AF=0.667;AN=3;AS_AltDP=65;AS_QD=22.54;BaseQRankSum=0.5;DP=91;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=22.54;ReadPosRankSum=0.855;SOR=0.819;VarDP=87 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:932,0:0,0,16,12 0/1:22,37:59:99:1029,0,527:13,9,24,13 +chrX 3414919 . A T 2669 . AC=3;AF=1.00;AN=3;AS_AltDP=82;AS_QD=32.91;DP=85;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.91;SOR=0.742;VarDP=82 GT:AD:DP:GQ:PL:SB 1:0,22:22:99:719,0:0,0,10,12 1/1:0,60:60:99:1980,180,0:0,0,32,28 +chrX 3415014 . A G 2505 . AC=3;AF=1.00;AN=3;AS_AltDP=78;AS_QD=32.50;DP=85;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.50;SOR=0.744;VarDP=78 GT:AD:DP:GQ:PL:SB 1:0,17:17:99:546,0:0,0,7,10 1/1:0,61:61:99:1989,183,0:0,0,33,28 +chrX 3415781 . C G 1844 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=20.59;BaseQRankSum=-0.244;DP=91;ExcessHet=0.0000;FS=1.808;MQ=60.00;MQRankSum=0;QD=20.59;ReadPosRankSum=-0.55;SOR=0.687;VarDP=91 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:988,0:0,0,15,14 0/1:30,32:62:99:886,0,811:14,16,17,15 +chrX 3415910 . A G 1112 . AC=1;AF=0.333;AN=3;AS_AltDP=42;AS_QD=16.08;BaseQRankSum=-1.15;DP=106;ExcessHet=0.0000;FS=15.487;MQ=60.00;MQRankSum=0;QD=16.08;ReadPosRankSum=0.544;SOR=1.420;VarDP=71 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,913 0/1:29,42:71:99:.:1142,0,750:11,18,28,14 +chrX 3415974 . T C 2905 . AC=3;AF=1.00;AN=3;AS_AltDP=93;AS_QD=31.56;DP=97;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.56;SOR=0.852;VarDP=93 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:822,0:0,0,12,13 1/1:0,68:68:99:2113,203,0:0,0,38,30 +chrX 3416385 . A G 854 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=12.63;BaseQRankSum=-0.528;DP=106;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=12.63;ReadPosRankSum=0.1;SOR=0.737;VarDP=70 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:34:99:34:0,794 0/1:37,33:70:99:.:884,0,1032:22,15,20,13 +chrX 3416462 . CTG C 602.97 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=13.10;BaseQRankSum=-0.627;DP=99;ExcessHet=0.0000;FS=2.460;MQ=60.00;MQRankSum=0;QD=13.10;ReadPosRankSum=1.107;SOR=1.041;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:34:99:34:0,794 0/1:27,22:49:99:.:642,0,805:14,13,9,13 +chrX 3416523 . G A 2792 . AC=3;AF=1.00;AN=3;AS_AltDP=83;AS_QD=33.60;BaseQRankSum=4.402;DP=86;ExcessHet=0.0000;FS=3.680;MQ=60.00;MQRankSum=0;QD=33.60;ReadPosRankSum=0.315;SOR=0.743;VarDP=84 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:976,0:0,0,11,18 1/1:1,54:55:99:1846,155,0:1,0,24,30 +chrX 3417213 . TCTTCCTTCCTTCCTTCCTTC TCTTCCTTCCTTC,T,TCTTCCTTCCTTCCTTCCTTCCTTCCTTC 1583.97 . AC=1,1,1;AF=0.333,0.333,0.333;AN=3;AS_AltDP=12,18,11;AS_QD=28.79,36.38,30.12;DP=65;ExcessHet=0.0000;FS=0.000;MQ=59.74;QD=39.59;SOR=0.741;VarDP=41 GT:AD:DP:GQ:PL:SB 1:0,12,0,0:12:99:479,0,479,479:0,0,9,3 2/3:0,0,18,11:29:99:1144,1170,1313,433,601,686,716,738,0,684:0,0,12,17 +chrX 3417807 . C A 614 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=12.88;BaseQRankSum=-1.476;DP=77;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=12.88;ReadPosRankSum=0.087;SOR=0.569;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:27:99:27:0,444 0/1:26,24:50:99:.:644,0,744:15,11,13,11 +chrX 3418818 . G A 2375 . AC=3;AF=1.00;AN=3;AS_AltDP=73;AS_QD=32.95;DP=77;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.95;SOR=0.720;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:853,0:0,0,11,15 1/1:0,47:47:99:1552,140,0:0,0,25,22 +chrX 3418852 . C T 2367 . AC=3;AF=1.00;AN=3;AS_AltDP=73;AS_QD=32.84;DP=76;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.84;SOR=0.776;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:833,0:0,0,12,14 1/1:0,47:47:99:1564,141,0:0,0,26,21 +chrX 3418955 . A C 1149 . AC=2;AF=0.667;AN=3;AS_AltDP=40;AS_QD=18.14;BaseQRankSum=-1.144;DP=69;ExcessHet=0.0000;FS=2.173;MQ=60.00;MQRankSum=0;QD=18.14;ReadPosRankSum=-0.114;SOR=0.410;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,20:20:99:660,0:0,0,11,9 0/1:25,20:45:99:519,0,714:9,16,7,13 +chrX 3419370 . C CAAAAAA,CAAAAAAAA 2922.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=36,30;AS_QD=30.31,26.41;DP=77;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.88;SOR=0.957;VarDP=66 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:1101,0,1102:0,0,16,10 1/2:0,10,30:40:99:1861,1097,981,385,0,257:0,0,21,19 +chrX 3419629 . G A 1258 . AC=2;AF=0.667;AN=3;AS_AltDP=42;AS_QD=23.00;BaseQRankSum=-0.775;DP=60;ExcessHet=0.0000;FS=2.591;MQ=60.00;MQRankSum=0;QD=23.00;ReadPosRankSum=0.957;SOR=1.127;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:853,0:0,0,9,17 0/1:14,16:30:99:435,0,372:7,7,8,8 +chrX 3419975 . C T 862 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=16.22;BaseQRankSum=-1.499;DP=84;ExcessHet=0.0000;FS=5.884;MQ=60.00;MQRankSum=0;QD=16.22;ReadPosRankSum=-1.126;SOR=0.214;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:27:99:27:0,655 0/1:21,34:55:99:.:892,0,535:15,6,18,16 +chrX 3419986 . G T 774 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=33.50;DP=81;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.50;SOR=1.270;VarDP=24 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,24:24:99:.:804,0:0,0,15,9 0/0:.:55:99:55:0,105,1325 +chrX 3420266 . T C 715 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=16.20;BaseQRankSum=-1.712;DP=81;ExcessHet=0.0000;FS=14.573;MQ=59.86;MQRankSum=-0.795;QD=16.20;ReadPosRankSum=0.736;SOR=1.351;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:34:99:34:0,587 0/1:19,27:46:99:.:745,0,523:13,6,9,18 +chrX 3420305 . T C 755 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=15.39;BaseQRankSum=-0.048;DP=87;ExcessHet=0.0000;FS=5.785;MQ=60.00;MQRankSum=0;QD=15.39;ReadPosRankSum=1.77;SOR=0.887;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:34:99:34:0,587 0/1:22,29:51:99:.:785,0,567:13,9,12,17 +chrX 3420430 . A G 549 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=10.92;BaseQRankSum=1.475;DP=91;ExcessHet=0.0000;FS=10.430;MQ=60.00;MQRankSum=0;QD=10.92;ReadPosRankSum=-0.957;SOR=0.793;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:34:99:34:0,587 0/1:31,22:53:99:.:579,0,859:10,21,13,9 +chrX 3420851 . C T 696 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=12.31;BaseQRankSum=0.909;DP=95;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=12.31;ReadPosRankSum=1.849;SOR=0.665;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:34:99:34:0,587 0/1:32,27:59:99:.:726,0,885:18,14,15,12 +chrX 3421030 . C CA 1727.97 . AC=3;AF=1.00;AN=3;AS_AltDP=74;AS_QD=23.88;DP=89;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=23.88;SOR=1.288;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:547,0:0,0,14,9 1/1:0,51:51:99:1220,152,0:0,0,32,19 +chrX 3421561 . A G 983 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=15.35;BaseQRankSum=1.95;DP=96;ExcessHet=0.0000;FS=8.392;MQ=60.00;MQRankSum=0;QD=15.35;ReadPosRankSum=0.477;SOR=0.634;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,213 0/1:30,36:66:99:.:1013,0,739:19,11,16,20 +chrX 3422232 . T C 523 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=12.57;BaseQRankSum=0.561;DP=76;ExcessHet=0.0000;FS=2.544;MQ=59.61;MQRankSum=0;QD=12.57;ReadPosRankSum=-1.845;SOR=1.119;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,213 0/1:23,21:44:99:.:553,0,617:11,12,8,13 +chrX 3422491 . G C 508 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=9.96;BaseQRankSum=-0.085;DP=85;ExcessHet=0.0000;FS=3.997;MQ=60.00;MQRankSum=0;QD=9.96;ReadPosRankSum=-1.383;SOR=1.426;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,213 0/1:32,22:54:99:.:538,0,866:17,15,15,7 +chrX 3422693 . C T 791 . AC=2;AF=0.667;AN=3;AS_AltDP=30;AS_QD=15.49;BaseQRankSum=0.727;DP=54;ExcessHet=0.0000;FS=2.294;MQ=59.84;MQRankSum=0.836;QD=15.49;ReadPosRankSum=-0.893;SOR=1.037;VarDP=53 GT:AD:DP:GQ:PL:SB 1:0,16:16:99:475,0:0,0,12,4 0/1:23,14:37:99:346,0,589:12,11,6,8 +chrX 3422720 . CAAAAAA CAAAAAAA,C 396.97 . AC=2,0;AF=0.667,0.00;AN=3;AS_AltDP=28,0;AS_QD=9.08,0.00;BaseQRankSum=-0.416;DP=76;ExcessHet=0.0000;FS=1.098;MQ=58.97;MQRankSum=-0.436;QD=9.08;ReadPosRankSum=0.338;SOR=0.527;VarDP=48 GT:AD:DP:GQ:PL:SB 1:0,17,0:17:99:323,0,323:0,0,10,7 0/1:20,11,0:31:99:113,0,678,220,634,1468:11,9,4,7 +chrX 3422734 . A AG,AAAAAAAG,AAAAAAAAG 526.97 . AC=1,0,0;AF=0.333,0.00,0.00;AN=3;AS_AltDP=12,0,0;AS_QD=21.77,14.64,15.43;BaseQRankSum=-0.111;DP=77;ExcessHet=0.0000;FS=1.471;MQ=59.56;MQRankSum=0;QD=21.77;ReadPosRankSum=0.334;SOR=1.022;VarDP=26 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,452,452,452 0/1:14,12,0,0:26:99:.:566,0,460,361,467,1118,350,420,1049,1032:7,7,7,5 +chrX 3423787 . C T 721 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=11.73;BaseQRankSum=-0.242;DP=94;ExcessHet=0.0000;FS=8.661;MQ=59.61;MQRankSum=-0.089;QD=11.73;ReadPosRankSum=-1.292;SOR=1.492;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,452 0/1:34,30:64:99:.:751,0,875:16,18,20,10 +chrX 3424179 . T C 649 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=15.09;BaseQRankSum=1.099;DP=77;ExcessHet=0.0000;FS=4.332;MQ=59.72;MQRankSum=1.114;QD=15.09;ReadPosRankSum=-0.785;SOR=1.385;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,452 0/1:21,24:45:99:.:679,0,540:12,9,17,7 +chrX 3424513 . C T 1152 . AC=1;AF=0.333;AN=3;AS_AltDP=42;AS_QD=16.42;BaseQRankSum=2.748;DP=103;ExcessHet=0.0000;FS=6.609;MQ=60.00;MQRankSum=0;QD=16.42;ReadPosRankSum=-0.446;SOR=1.491;VarDP=72 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,452 0/1:30,42:72:99:.:1182,0,687:13,17,12,30 +chrX 3424795 . T A 616 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=15.38;BaseQRankSum=-0.189;DP=74;ExcessHet=0.0000;FS=1.221;MQ=60.00;MQRankSum=0;QD=15.38;ReadPosRankSum=-0.102;SOR=0.998;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,452 0/1:18,24:42:99:.:646,0,459:8,10,9,15 +chrX 3424846 . AT A 397.97 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=11.81;BaseQRankSum=1.017;DP=71;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=11.81;ReadPosRankSum=0.791;SOR=0.602;VarDP=37 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,452 0/1:19,18:37:99:.:437,0,456:9,10,9,9 +chrX 3426245 . A G 1510 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=19.49;BaseQRankSum=-0.464;DP=83;ExcessHet=0.0000;FS=7.833;MQ=60.00;MQRankSum=0;QD=19.49;ReadPosRankSum=1.347;SOR=0.839;VarDP=79 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:899,0:0,0,11,16 0/1:27,25:52:99:641,0,718:16,11,11,14 +chrX 3426863 . T C 608 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=17.24;BaseQRankSum=-0.808;DP=70;ExcessHet=0.0000;FS=3.106;MQ=59.57;MQRankSum=0;QD=17.24;ReadPosRankSum=-1.273;SOR=1.202;VarDP=37 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,416 0/1:13,24:37:99:.:638,0,306:6,7,15,9 +chrX 3427089 . G A 647 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=19.91;BaseQRankSum=0.075;DP=64;ExcessHet=0.0000;FS=1.491;MQ=60.00;MQRankSum=0;QD=19.91;ReadPosRankSum=-0.976;SOR=1.201;VarDP=34 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,416 0/1:11,23:34:99:.:677,0,270:5,6,8,15 +chrX 3428194 . G A 403 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=9.41;BaseQRankSum=1.478;DP=76;ExcessHet=0.0000;FS=6.286;MQ=60.00;MQRankSum=0;QD=9.41;ReadPosRankSum=-0.865;SOR=1.634;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,416 0/1:29,17:46:99:.:433,0,780:15,14,12,5 +chrX 3428470 . G A 840 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=12.61;BaseQRankSum=-1.211;DP=101;ExcessHet=0.0000;FS=1.990;MQ=60.00;MQRankSum=0;QD=12.61;ReadPosRankSum=0.612;SOR=0.458;VarDP=69 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,416 0/1:35,34:69:99:.:870,0,945:15,20,17,17 +chrX 3429136 . T TAA 908.97 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=21.55;BaseQRankSum=1.075;DP=76;ExcessHet=0.0000;FS=2.548;MQ=59.54;MQRankSum=0.836;QD=21.55;ReadPosRankSum=1.156;SOR=0.392;VarDP=44 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:30:99:30:.:.:0,416 0|1:20,24:44:99:.:0|1:3429136_T_TAA:948,0,757:3429136:12,8,12,12 +chrX 3429141 . C A 944 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=21.17;BaseQRankSum=2.281;DP=77;ExcessHet=0.0000;FS=2.512;MQ=59.55;MQRankSum=0.824;QD=21.17;ReadPosRankSum=1.103;SOR=0.392;VarDP=46 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:30:99:30:.:.:0,416 0|1:21,25:46:99:.:0|1:3429136_T_TAA:974,0,784:3429136:13,8,13,12 +chrX 3430104 . A G 949 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=15.79;BaseQRankSum=-1.818;DP=92;ExcessHet=0.0000;FS=1.020;MQ=60.00;MQRankSum=0;QD=15.79;ReadPosRankSum=1.062;SOR=0.869;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,416 0/1:25,37:62:99:.:979,0,653:16,9,25,12 +chrX 3430546 . C T 515 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=12.11;BaseQRankSum=0.867;DP=75;ExcessHet=0.0000;FS=2.649;MQ=60.00;MQRankSum=0;QD=12.11;ReadPosRankSum=-0.102;SOR=1.276;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,416 0/1:24,21:45:99:.:545,0,650:13,11,14,7 +chrX 3430617 . T C 766 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=15.92;BaseQRankSum=0.274;DP=81;ExcessHet=0.0000;FS=4.059;MQ=60.00;MQRankSum=0;QD=15.92;ReadPosRankSum=0.275;SOR=1.329;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,416 0/1:21,29:50:99:.:796,0,527:11,10,19,10 +chrX 3430769 . G A 1023 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=17.26;BaseQRankSum=-1.101;DP=94;ExcessHet=0.0000;FS=1.008;MQ=59.82;MQRankSum=-0.772;QD=17.26;ReadPosRankSum=-1.041;SOR=0.984;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,416 0/1:24,37:61:99:.:1053,0,626:12,12,21,16 +chrX 3430896 . ACACC A 849.97 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=16.77;BaseQRankSum=-0.492;DP=87;ExcessHet=0.0000;FS=9.929;MQ=59.93;MQRankSum=0;QD=16.77;ReadPosRankSum=-0.214;SOR=1.016;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,416 0/1:27,26:53:99:.:889,0,952:17,10,10,16 +chrX 3431221 . A G 700 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=12.59;BaseQRankSum=1.026;DP=88;ExcessHet=0.0000;FS=3.697;MQ=60.00;MQRankSum=0;QD=12.59;ReadPosRankSum=2.071;SOR=1.230;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,416 0/1:30,28:58:99:.:730,0,774:13,17,9,19 +chrX 3431606 . C CAAAAA 743.97 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=19.10;BaseQRankSum=-0.699;DP=82;ExcessHet=0.0000;FS=2.963;MQ=59.89;MQRankSum=-0.927;QD=19.10;ReadPosRankSum=-1.475;SOR=0.293;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,416 0/1:20,21:41:99:.:783,0,716:15,5,13,8 +chrX 3431800 . T A 287 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=8.34;BaseQRankSum=0.632;DP=70;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=8.34;ReadPosRankSum=-0.031;SOR=0.608;VarDP=38 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,416 0/1:25,13:38:99:.:317,0,694:14,11,7,6 +chrX 3431902 . A G 1187 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=23.86;BaseQRankSum=-0.481;DP=83;ExcessHet=0.0000;FS=6.118;MQ=60.00;MQRankSum=0;QD=23.86;ReadPosRankSum=0.01;SOR=1.154;VarDP=51 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:30:99:30:.:.:0,416 0|1:19,32:51:99:.:0|1:3431902_A_G:1217,0,669:3431902:8,11,20,12 +chrX 3431910 . A C 1152 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=22.73;BaseQRankSum=-0.169;DP=83;ExcessHet=0.0000;FS=3.983;MQ=60.00;MQRankSum=0;QD=22.73;ReadPosRankSum=0.804;SOR=1.165;VarDP=52 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:30:99:30:.:.:0,416 0|1:21,31:52:99:.:0|1:3431902_A_G:1182,0,717:3431902:10,11,19,12 +chrX 3431957 . GCGCACA G 953.97 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=18.39;BaseQRankSum=0.057;DP=90;ExcessHet=0.0000;FS=3.840;MQ=60.00;MQRankSum=0;QD=18.39;ReadPosRankSum=1.114;SOR=1.099;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,416 0/1:26,28:54:99:.:993,0,947:12,14,17,11 +chrX 3432713 . T C 476 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=11.77;BaseQRankSum=0.753;DP=77;ExcessHet=0.0000;FS=6.638;MQ=60.00;MQRankSum=0;QD=11.77;ReadPosRankSum=-0.404;SOR=1.555;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,416 0/1:24,19:43:99:.:506,0,675:13,11,6,13 +chrX 3432885 . CT C 612.97 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=12.78;BaseQRankSum=-1.13;DP=86;ExcessHet=0.0000;FS=1.110;MQ=60.00;MQRankSum=0;QD=12.78;ReadPosRankSum=-0.152;SOR=1.028;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,416 0/1:22,29:51:99:.:652,0,508:12,10,18,11 +chrX 3432919 . T C 954 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=16.68;BaseQRankSum=0.533;DP=93;ExcessHet=0.0000;FS=2.230;MQ=60.00;MQRankSum=0;QD=16.68;ReadPosRankSum=0.741;SOR=0.432;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,416 0/1:24,35:59:99:.:984,0,647:15,9,19,16 +chrX 3433039 . C A 735 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=15.94;BaseQRankSum=0.399;DP=81;ExcessHet=0.0000;FS=2.509;MQ=60.00;MQRankSum=0;QD=15.94;ReadPosRankSum=1.55;SOR=0.745;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,416 0/1:21,27:48:99:.:765,0,541:12,9,12,15 +chrX 3433457 . T C 899 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=18.58;BaseQRankSum=-0.065;DP=81;ExcessHet=0.0000;FS=1.064;MQ=60.00;MQRankSum=0;QD=18.58;ReadPosRankSum=1.379;SOR=0.874;VarDP=50 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:30:99:30:.:.:0,416 0|1:26,24:50:99:.:0|1:3433457_T_C:929,0,993:3433457:14,12,14,10 +chrX 3433458 . A C 899 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=18.58;BaseQRankSum=0.206;DP=81;ExcessHet=0.0000;FS=1.064;MQ=60.00;MQRankSum=0;QD=18.58;ReadPosRankSum=1.408;SOR=0.874;VarDP=50 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:30:99:30:.:.:0,416 0|1:26,24:50:99:.:0|1:3433457_T_C:929,0,993:3433457:14,12,14,10 +chrX 3433617 . G T 633 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=15.79;BaseQRankSum=0.171;DP=76;ExcessHet=0.0000;FS=4.368;MQ=60.00;MQRankSum=0;QD=15.79;ReadPosRankSum=0.733;SOR=0.440;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,416 0/1:19,23:42:99:.:663,0,524:12,7,11,12 +chrX 3433938 . GTCTA G,GTCTATCTA 1783.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=19,25;AS_QD=31.02,26.67;DP=92;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=41.43;SOR=0.990;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,416,416 1/2:0,19,25:44:99:.:1823,1033,1033,795,0,721:0,0,19,25 +chrX 3434084 . C T 730 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=13.57;BaseQRankSum=-0.693;DP=91;ExcessHet=0.0000;FS=2.268;MQ=60.00;MQRankSum=0;QD=13.57;ReadPosRankSum=-1.575;SOR=0.758;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,416 0/1:27,29:56:99:.:760,0,705:15,12,13,16 +chrX 3434331 . C G 614 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=12.88;BaseQRankSum=-0.107;DP=82;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=12.88;ReadPosRankSum=0.971;SOR=0.728;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,416 0/1:26,24:50:99:.:644,0,713:10,16,9,15 +chrX 3434599 . C G 962 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=16.53;BaseQRankSum=1.409;DP=92;ExcessHet=0.0000;FS=3.667;MQ=60.00;MQRankSum=0;QD=16.53;ReadPosRankSum=-0.456;SOR=0.440;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,416 0/1:23,37:60:99:.:992,0,486:9,14,19,18 +chrX 3434787 . A G 2365 . AC=3;AF=1.00;AN=3;AS_AltDP=75;AS_QD=31.93;DP=78;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.93;SOR=0.719;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,37:37:99:1230,0:0,0,17,20 1/1:0,38:38:99:1165,114,0:0,0,20,18 +chrX 3434949 . C T 511 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=10.21;BaseQRankSum=0.736;DP=89;ExcessHet=0.0000;FS=2.417;MQ=60.00;MQRankSum=0;QD=10.21;ReadPosRankSum=1.146;SOR=0.519;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:34:99:34:0,456 0/1:32,21:53:99:.:541,0,868:19,13,10,11 +chrX 3435468 . A T 932 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=17.49;BaseQRankSum=0.46;DP=90;ExcessHet=0.0000;FS=4.388;MQ=60.00;MQRankSum=0;QD=17.49;ReadPosRankSum=0.366;SOR=0.243;VarDP=55 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:34:99:34:.:.:0,456 0|1:29,26:55:99:.:0|1:3435468_A_T:962,0,1117:3435468:6,23,9,17 +chrX 3435470 . A C 932 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=17.49;BaseQRankSum=-1.432;DP=90;ExcessHet=0.0000;FS=4.388;MQ=60.00;MQRankSum=0;QD=17.49;ReadPosRankSum=-0.225;SOR=0.243;VarDP=55 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:34:99:34:.:.:0,456 0|1:29,26:55:99:.:0|1:3435468_A_T:962,0,1117:3435468:6,23,9,17 +chrX 3435800 . T C 664 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=13.61;BaseQRankSum=1.397;DP=89;ExcessHet=0.0000;FS=0.000;MQ=57.26;MQRankSum=-3.385;QD=13.61;ReadPosRankSum=1.329;SOR=0.622;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:34:99:34:0,456 0/1:25,26:51:99:.:694,0,611:13,12,13,13 +chrX 3435834 . C CATAA 862.97 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=20.50;BaseQRankSum=-1.706;DP=82;ExcessHet=0.0000;FS=0.000;MQ=55.30;MQRankSum=-4.378;QD=20.50;ReadPosRankSum=-0.071;SOR=0.859;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:34:99:34:0,456 0/1:21,23:44:99:.:902,0,813:11,10,13,10 +chrX 3436023 . T C 574 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=15.10;BaseQRankSum=-0.545;DP=74;ExcessHet=0.0000;FS=1.254;MQ=55.13;MQRankSum=-3.901;QD=15.10;ReadPosRankSum=-1.443;SOR=0.437;VarDP=40 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:34:99:34:.:.:0,456 0|1:23,17:40:99:.:0|1:3436023_T_C:604,0,903:3436023:9,14,8,9 +chrX 3436032 . C G 549 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=14.48;BaseQRankSum=-0.23;DP=75;ExcessHet=0.0000;FS=0.000;MQ=55.60;MQRankSum=-3.82;QD=14.48;ReadPosRankSum=-0.58;SOR=0.610;VarDP=40 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:34:99:34:.:.:0,456 0|1:24,16:40:99:.:0|1:3436023_T_C:579,0,938:3436023:10,14,7,9 +chrX 3436263 . T G 1023 . AC=2;AF=0.667;AN=3;AS_AltDP=36;AS_QD=18.47;BaseQRankSum=-1.224;DP=59;ExcessHet=0.0000;FS=1.058;MQ=45.75;MQRankSum=1.436;QD=18.47;ReadPosRankSum=-1.304;SOR=0.465;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,20:20:99:643,0:0,0,11,9 0/1:21,16:37:99:410,0,582:9,12,7,9 +chrX 3436279 . C G 1275 . AC=2;AF=0.667;AN=3;AS_AltDP=33;AS_QD=24.17;BaseQRankSum=0.208;DP=54;ExcessHet=0.0000;FS=1.075;MQ=41.30;MQRankSum=2.178;QD=24.17;ReadPosRankSum=-1.45;SOR=0.811;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,19:19:99:.:.:803,0:.:0,0,9,10 0|1:21,14:35:99:0|1:3436279_C_G:502,0,828:3436279:11,10,6,8 +chrX 3436282 . T C 1279 . AC=2;AF=0.667;AN=3;AS_AltDP=33;AS_QD=24.24;BaseQRankSum=0.252;DP=55;ExcessHet=0.0000;FS=1.075;MQ=40.83;MQRankSum=1.906;QD=24.24;ReadPosRankSum=-1.313;SOR=0.811;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,20:20:99:.:.:837,0:.:0,0,9,11 0|1:21,13:34:99:0|1:3436279_C_G:472,0,831:3436279:11,10,6,7 +chrX 3436448 . C T 923 . AC=2;AF=0.667;AN=3;AS_AltDP=32;AS_QD=17.02;BaseQRankSum=0.093;DP=60;ExcessHet=0.0000;FS=1.030;MQ=45.88;MQRankSum=-1.444;QD=17.02;ReadPosRankSum=-0.04;SOR=0.519;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,15:15:99:505,0:0,0,8,7 0/1:24,17:41:99:448,0,672:14,10,9,8 +chrX 3436853 . GTA G 1638.97 . AC=2;AF=0.667;AN=3;AS_AltDP=48;AS_QD=26.63;BaseQRankSum=-0.614;DP=70;ExcessHet=0.0000;FS=1.161;MQ=60.00;MQRankSum=0;QD=26.63;ReadPosRankSum=0.128;SOR=1.022;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:1082,0:0,0,18,11 0/1:15,19:34:99:596,0,408:8,7,11,8 +chrX 3437397 . CTG C 1670.97 . AC=2;AF=0.667;AN=3;AS_AltDP=50;AS_QD=21.38;BaseQRankSum=-0.544;DP=99;ExcessHet=0.0000;FS=3.031;MQ=60.00;MQRankSum=0;QD=21.38;ReadPosRankSum=-1.573;SOR=1.051;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:1151,0:0,0,16,15 0/1:30,19:49:99:559,0,948:15,15,13,6 +chrX 3437591 . T C 1142 . AC=2;AF=0.667;AN=3;AS_AltDP=44;AS_QD=17.49;BaseQRankSum=1.161;DP=69;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=17.49;ReadPosRankSum=0.916;SOR=0.792;VarDP=67 GT:AD:DP:GQ:PL:SB 1:1,22:23:99:604,0:0,1,10,12 0/1:22,22:44:99:568,0,628:11,11,10,12 +chrX 3437715 . AGTGT A 1700.97 . AC=2;AF=0.667;AN=3;AS_AltDP=43;AS_QD=28.52;BaseQRankSum=0.161;DP=73;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=28.52;ReadPosRankSum=0.675;SOR=0.628;VarDP=61 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,22:22:99:.:.:953,0:.:0,0,9,13 0|1:18,21:39:99:0|1:3437715_AGTGT_A:787,0,645:3437715:8,10,11,10 +chrX 3438607 . G A 1751 . AC=2;AF=0.667;AN=3;AS_AltDP=65;AS_QD=17.63;BaseQRankSum=2.499;DP=104;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=17.63;ReadPosRankSum=2.089;SOR=0.692;VarDP=101 GT:AD:DP:GQ:PL:SB 1:2,25:27:99:768,0:1,1,10,15 0/1:34,40:74:99:1013,0,919:19,15,26,14 +chrX 3438865 . A AT 1319.97 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=17.20;BaseQRankSum=0.37;DP=85;ExcessHet=0.0000;FS=4.629;MQ=60.00;MQRankSum=0;QD=17.20;ReadPosRankSum=-0.201;SOR=0.694;VarDP=79 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:784,0:0,0,15,12 0/1:26,26:52:99:575,0,625:11,15,14,12 +chrX 3439504 . C CA,CAA 93.97 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=2,3;AS_QD=13.14,16.63;BaseQRankSum=1.085;DP=58;ExcessHet=0.0000;FS=0.000;MQ=56.21;MQRankSum=-0.765;QD=13.30;ReadPosRankSum=0.1;SOR=0.693;VarDP=10 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:27:99:27:0,387,387 0/2:5,2,3:10:41:.:133,41,103,0,45,95:4,1,4,1 +chrX 3439563 . C T 1728 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=24.42;BaseQRankSum=-0.457;DP=72;ExcessHet=0.0000;FS=11.063;MQ=59.93;MQRankSum=0;QD=24.42;ReadPosRankSum=-2.099;SOR=0.110;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:1018,0:0,0,16,15 0/1:15,26:41:99:740,0,378:12,3,14,12 +chrX 3441677 . G A 1863 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=21.27;BaseQRankSum=1.77;DP=94;ExcessHet=0.0000;FS=8.233;MQ=60.00;MQRankSum=0;QD=21.27;ReadPosRankSum=0.776;SOR=1.652;VarDP=89 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:1023,0:0,0,23,7 0/1:27,32:59:99:870,0,661:14,13,20,12 +chrX 3441813 . G A 2625 . AC=2;AF=0.667;AN=3;AS_AltDP=88;AS_QD=23.50;BaseQRankSum=-1.472;DP=114;ExcessHet=0.0000;FS=13.525;MQ=60.00;MQRankSum=0;QD=23.50;ReadPosRankSum=1.177;SOR=0.239;VarDP=113 GT:AD:DP:GQ:PL:SB 1:0,47:47:99:1499,0:0,0,26,21 0/1:25,41:66:99:1156,0,644:7,18,19,22 +chrX 3442364 . A G 1328 . AC=2;AF=0.667;AN=3;AS_AltDP=45;AS_QD=20.89;BaseQRankSum=-1.771;DP=65;ExcessHet=0.0000;FS=12.117;MQ=60.00;MQRankSum=0;QD=20.89;ReadPosRankSum=0.378;SOR=0.207;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:779,0:0,0,14,9 0/1:20,22:42:99:579,0,544:5,15,9,13 +chrX 3442583 . GT G 911.97 . AC=2;AF=0.667;AN=3;AS_AltDP=42;AS_QD=13.39;BaseQRankSum=-0.271;DP=80;ExcessHet=0.0000;FS=0.000;MQ=59.79;MQRankSum=0;QD=13.39;ReadPosRankSum=0.624;SOR=0.798;VarDP=71 GT:AD:DP:GQ:PL:SB 1:1,24:25:99:645,0:0,1,15,9 0/1:28,18:46:99:306,0,549:18,10,12,6 +chrX 3443171 . C CT 574.97 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=10.41;BaseQRankSum=0.658;DP=95;ExcessHet=0.0000;FS=5.204;MQ=60.00;MQRankSum=0;QD=10.41;ReadPosRankSum=-1.078;SOR=0.547;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,705 0/1:31,28:59:99:.:614,0,707:19,12,13,15 +chrX 3445593 . C T 2217 . AC=3;AF=1.00;AN=3;AS_AltDP=69;AS_QD=32.57;DP=72;ExcessHet=0.0000;FS=0.000;MQ=59.70;QD=32.57;SOR=0.980;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:967,0:0,0,15,15 1/1:0,39:39:99:1280,117,0:0,0,24,15 +chrX 3446099 . CA C 268.97 . AC=2;AF=0.667;AN=3;AS_AltDP=24;AS_QD=7.51;BaseQRankSum=2.46;DP=78;ExcessHet=0.0000;FS=27.864;MQ=58.73;MQRankSum=1.038;QD=7.51;ReadPosRankSum=1.75;SOR=2.014;VarDP=41 GT:AD:DP:GQ:PL:SB 1:3,11:14:99:154,0:0,3,7,4 0/1:14,13:27:99:154,0,165:4,10,11,2 +chrX 3446149 . A G 560 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=14.75;BaseQRankSum=0.351;DP=74;ExcessHet=0.0000;FS=2.699;MQ=60.00;MQRankSum=0;QD=14.75;ReadPosRankSum=-2.04;SOR=0.368;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:34:99:34:0,744 0/1:18,22:40:99:.:590,0,451:7,11,11,11 +chrX 3447667 . A C 3532 . AC=3;AF=1.00;AN=3;AS_AltDP=110;AS_QD=32.38;DP=111;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.38;SOR=0.888;VarDP=110 GT:AD:DP:GQ:PL:SB 1:0,37:37:99:1195,0:0,0,14,23 1/1:0,73:73:99:2367,218,0:0,0,36,37 +chrX 3448083 . ATC A 1931.97 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=26.64;BaseQRankSum=2.396;DP=75;ExcessHet=0.0000;FS=13.285;MQ=60.00;MQRankSum=0;QD=26.64;ReadPosRankSum=0.722;SOR=0.970;VarDP=74 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:2,25:27:99:.:.:1004,0:.:1,1,11,14 0|1:21,26:47:99:0|1:3448083_ATC_A:967,0,741:3448083:14,7,9,17 +chrX 3448087 . ATC A 1925.97 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=25.86;BaseQRankSum=1.825;DP=77;ExcessHet=0.0000;FS=12.782;MQ=60.00;MQRankSum=0;QD=25.86;ReadPosRankSum=0.695;SOR=0.981;VarDP=76 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:2,25:27:99:.:.:1004,0:.:1,1,11,14 0|1:23,26:49:99:0|1:3448083_ATC_A:961,0,805:3448083:15,8,9,17 +chrX 3448155 . A G 274 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=7.41;BaseQRankSum=-1.171;DP=71;ExcessHet=0.0000;FS=1.273;MQ=60.00;MQRankSum=0;QD=7.41;ReadPosRankSum=1.002;SOR=1.112;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:27:99:27:0,739 0/1:26,15:41:99:.:304,0,717:13,13,9,6 +chrX 3448220 . C T 2427 . AC=3;AF=1.00;AN=3;AS_AltDP=73;AS_QD=33.66;DP=75;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.66;SOR=1.103;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:799,0:0,0,10,13 1/1:0,50:50:99:1658,150,0:0,0,33,17 +chrX 3448639 . G A 1333 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=18.67;BaseQRankSum=-0.436;DP=77;ExcessHet=0.0000;FS=8.288;MQ=60.00;MQRankSum=0;QD=18.67;ReadPosRankSum=0;SOR=0.462;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:839,0:0,0,12,14 0/1:26,21:47:99:524,0,713:9,17,13,8 +chrX 3449299 . C T 535 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=12.56;BaseQRankSum=-1.154;DP=72;ExcessHet=0.0000;FS=1.145;MQ=60.00;MQRankSum=0;QD=12.56;ReadPosRankSum=-0.353;SOR=0.655;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:26:99:26:0,432 0/1:24,21:45:99:.:565,0,689:13,11,10,11 +chrX 3449402 . C T 500 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=14.72;BaseQRankSum=-1.454;DP=64;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.72;ReadPosRankSum=-0.765;SOR=0.693;VarDP=36 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:26:99:26:0,432 0/1:16,20:36:99:.:530,0,438:8,8,10,10 +chrX 3450648 . C CT 264.97 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=8.44;BaseQRankSum=1.141;DP=65;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=8.44;ReadPosRankSum=-0.466;SOR=0.745;VarDP=36 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:26:99:26:0,432 0/1:21,15:36:99:.:304,0,483:11,10,7,8 +chrX 3451314 . C T 1572 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=19.78;BaseQRankSum=1.194;DP=86;ExcessHet=0.0000;FS=9.839;MQ=60.00;MQRankSum=0;QD=19.78;ReadPosRankSum=-1.078;SOR=0.623;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:981,0:0,0,14,15 0/1:29,23:52:99:621,0,792:10,19,15,8 +chrX 3451839 . A G 477 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=14.08;BaseQRankSum=1.831;DP=65;ExcessHet=0.0000;FS=3.110;MQ=60.00;MQRankSum=0;QD=14.08;ReadPosRankSum=0.538;SOR=1.536;VarDP=36 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:99:28:0,421 0/1:18,18:36:99:.:507,0,438:10,8,13,5 +chrX 3451893 . G GAA,GAAA 1528.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=22,19;AS_QD=31.68,27.45;DP=74;ExcessHet=0.0000;FS=0.000;MQ=59.29;QD=38.24;SOR=0.954;VarDP=41 GT:AD:DP:GQ:PL:SB 1:0,14,0:14:99:368,0,368:0,0,6,8 1/2:0,8,19:27:93:1200,389,277,206,0,93:0,0,12,15 +chrX 3452466 . CATCTATCTATCTATCT C,CATCTATCTATCT 1977.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=35,12;AS_QD=30.87,28.36;DP=66;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=42.91;SOR=0.919;VarDP=47 GT:AD:DP:GQ:PL:SB 1:0,16,0:16:99:721,0,721:0,0,5,11 1/2:0,19,12:31:99:1296,504,487,792,0,755:0,0,16,15 +chrX 3453784 . C T 1885 . AC=2;AF=0.667;AN=3;AS_AltDP=64;AS_QD=21.04;BaseQRankSum=0.291;DP=94;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=21.04;ReadPosRankSum=-0.27;SOR=0.796;VarDP=91 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:957,0:0,0,15,14 0/1:27,35:62:99:958,0,675:12,15,12,23 +chrX 3454227 . G A 1862 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=22.26;BaseQRankSum=0;DP=86;ExcessHet=0.0000;FS=0.890;MQ=60.00;MQRankSum=0;QD=22.26;ReadPosRankSum=-2.357;SOR=0.693;VarDP=85 GT:AD:DP:GQ:PL:SB 1:0,38:38:99:1270,0:0,0,22,16 0/1:25,22:47:99:622,0,728:12,13,9,13 +chrX 3454740 . A T 1697 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=19.40;BaseQRankSum=-1.391;DP=92;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=19.40;ReadPosRankSum=0.937;SOR=0.614;VarDP=89 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:1042,0:0,0,19,14 0/1:30,26:56:99:685,0,855:18,12,15,11 +chrX 3454933 . T G 1573 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=20.82;BaseQRankSum=-1.225;DP=79;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=20.82;ReadPosRankSum=0.599;SOR=0.640;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:814,0:0,0,9,15 0/1:24,29:53:99:789,0,655:10,14,14,15 +chrX 3455088 . T G 1708 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=22.28;BaseQRankSum=-0.468;DP=82;ExcessHet=0.0000;FS=7.308;MQ=60.00;MQRankSum=0;QD=22.28;ReadPosRankSum=0.4;SOR=0.784;VarDP=78 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:919,0:0,0,16,11 0/1:19,32:51:99:819,0,437:7,12,18,14 +chrX 3455173 . T G 2677 . AC=3;AF=1.00;AN=3;AS_AltDP=81;AS_QD=33.42;DP=85;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.42;SOR=1.058;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,35:35:99:1109,0:0,0,24,11 1/1:0,46:46:99:1598,138,0:0,0,23,23 +chrX 3455501 . G A 2629 . AC=3;AF=1.00;AN=3;AS_AltDP=82;AS_QD=32.04;BaseQRankSum=-0.273;DP=86;ExcessHet=0.0000;FS=3.063;MQ=60.00;MQRankSum=0;QD=32.04;ReadPosRankSum=-1.53;SOR=0.300;VarDP=83 GT:AD:DP:GQ:PL:SB 1:1,33:34:99:1042,0:1,0,17,16 1/1:0,49:49:99:1617,147,0:0,0,23,26 +chrX 3455708 . A G 2557 . AC=3;AF=1.00;AN=3;AS_AltDP=81;AS_QD=31.94;DP=82;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.94;SOR=0.821;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,34:34:99:1132,0:0,0,15,19 1/1:0,47:47:99:1455,140,0:0,0,23,24 +chrX 3456599 . G A 504 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=12.14;BaseQRankSum=0.615;DP=82;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=12.14;ReadPosRankSum=-0.366;SOR=0.752;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:33:99:33:0,532 0/1:24,20:44:99:.:534,0,622:10,14,8,12 +chrX 3456605 . T TTCTCTCTCTCTCTCTC,TTCTCTCTCTCTCTCTCTCTC 1073.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=16,13;AS_QD=21.43,17.41;BaseQRankSum=1.241;DP=77;ExcessHet=0.0000;FS=2.836;MQ=58.71;MQRankSum=0.056;QD=25.88;ReadPosRankSum=1.308;SOR=1.255;VarDP=43 GT:AD:DP:GQ:PL:SB 1:1,16,0:17:99:643,0,670:0,1,5,11 0/2:13,0,13:26:99:470,512,997,0,484,445:7,6,6,7 +chrX 3456670 . TCCC T 1014.97 . AC=2;AF=0.667;AN=3;AS_AltDP=25;AS_QD=26.68;BaseQRankSum=0.787;DP=36;ExcessHet=0.0000;FS=22.143;MQ=58.40;MQRankSum=-0.189;QD=37.64;ReadPosRankSum=-0.435;SOR=3.500;VarDP=28 GT:AD:DP:GQ:PL:SB 1:1,11:12:99:472,0:1,0,1,10 0/1:2,14:16:1:582,0,1:2,0,2,12 +chrX 3457400 . G T 784 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=15.96;BaseQRankSum=1.598;DP=82;ExcessHet=0.0000;FS=2.373;MQ=60.00;MQRankSum=0;QD=15.96;ReadPosRankSum=0.257;SOR=0.426;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:99:28:0,292 0/1:22,29:51:99:.:814,0,527:14,8,16,13 +chrX 3457838 . T C 684 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=18.31;BaseQRankSum=-1.363;DP=68;ExcessHet=0.0000;FS=1.307;MQ=59.50;MQRankSum=0;QD=18.31;ReadPosRankSum=1.282;SOR=0.465;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:99:28:0,292 0/1:13,26:39:99:.:714,0,325:5,8,12,14 +chrX 3458263 . A G 3046 . AC=3;AF=1.00;AN=3;AS_AltDP=95;AS_QD=32.38;DP=101;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.38;SOR=0.802;VarDP=95 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:1012,0:0,0,14,17 1/1:0,64:64:99:2064,192,0:0,0,36,28 +chrX 3459474 . G A 685 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=14.02;BaseQRankSum=2.781;DP=84;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.02;ReadPosRankSum=0.386;SOR=0.770;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,561 0/1:26,25:51:99:.:715,0,680:13,13,12,13 +chrX 3460018 . C A 780 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=15.88;BaseQRankSum=0.357;DP=82;ExcessHet=0.0000;FS=3.978;MQ=60.00;MQRankSum=0;QD=15.88;ReadPosRankSum=0.961;SOR=0.685;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,561 0/1:22,29:51:99:.:810,0,567:9,13,16,13 +chrX 3461118 . T C 1806 . AC=2;AF=0.667;AN=3;AS_AltDP=64;AS_QD=18.73;BaseQRankSum=-0.975;DP=99;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=18.73;ReadPosRankSum=-0.343;SOR=0.714;VarDP=98 GT:AD:DP:GQ:PL:SB 1:0,38:38:99:1219,0:0,0,22,16 0/1:34,26:60:99:617,0,953:19,15,14,12 +chrX 3462637 . CCACACACA C,CCACA 2432.97 . AC=1,2;AF=0.333,0.667;AN=3;AS_AltDP=21,37;AS_QD=26.80,24.21;DP=70;ExcessHet=0.0000;FS=0.000;MQ=58.66;QD=42.62;SOR=1.179;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:901,0,901:0,0,15,6 2/2:0,0,37:37:99:1571,1571,1571,111,111,0:0,0,20,17 +chrX 3463004 . T C 684 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=15.87;BaseQRankSum=1.183;DP=76;ExcessHet=0.0000;FS=1.170;MQ=60.00;MQRankSum=0;QD=15.87;ReadPosRankSum=-0.617;SOR=0.442;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,665 0/1:20,25:45:99:.:714,0,518:8,12,12,13 +chrX 3463302 . C G 1762 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=21.08;BaseQRankSum=1.376;DP=88;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=21.08;ReadPosRankSum=-0.98;SOR=0.636;VarDP=85 GT:AD:DP:GQ:PL:SB 1:0,44:44:99:1354,0:0,0,18,26 0/1:24,17:41:99:438,0,621:11,13,11,6 +chrX 3463471 . T C 1459 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=19.09;BaseQRankSum=-1.063;DP=82;ExcessHet=0.0000;FS=4.576;MQ=60.00;MQRankSum=0;QD=19.09;ReadPosRankSum=0.104;SOR=0.943;VarDP=78 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:988,0:0,0,16,14 0/1:26,22:48:99:501,0,676:12,14,14,8 +chrX 3463844 . G A 550 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=14.50;BaseQRankSum=1.362;DP=76;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.50;ReadPosRankSum=0.799;SOR=0.701;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,724 0/1:19,21:40:99:.:580,0,465:10,9,10,11 +chrX 3464528 . C CT 1331.97 . AC=3;AF=1.00;AN=3;AS_AltDP=52;AS_QD=26.37;DP=61;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=26.37;SOR=1.358;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:632,0:0,0,15,9 1/1:0,28:28:84:739,84,0:0,0,18,10 +chrX 3464612 . T C 2178 . AC=3;AF=1.00;AN=3;AS_AltDP=69;AS_QD=32.00;DP=71;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.00;SOR=0.910;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:888,0:0,0,13,15 1/1:0,41:41:99:1320,123,0:0,0,25,16 +chrX 3465167 . T TCCGGAAGAG 3940.97 . AC=3;AF=1.00;AN=3;AS_AltDP=94;AS_QD=29.30;BaseQRankSum=1.59;DP=107;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=41.03;ReadPosRankSum=-2.645;SOR=0.668;VarDP=97 GT:AD:DP:GQ:PL:SB 1:3,34:37:99:1326,0:2,1,19,15 1/1:0,60:60:99:2654,180,0:0,0,37,23 +chrX 3465273 . G A 638 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=10.77;BaseQRankSum=0.543;DP=102;ExcessHet=0.0000;FS=17.050;MQ=60.00;MQRankSum=0;QD=10.77;ReadPosRankSum=1.691;SOR=1.568;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:37:99:37:0,759 0/1:36,26:62:99:.:668,0,909:23,13,8,18 +chrX 3465493 . C T 3235 . AC=3;AF=1.00;AN=3;AS_AltDP=103;AS_QD=31.70;DP=110;ExcessHet=0.0000;FS=0.000;MQ=59.89;QD=31.70;SOR=0.752;VarDP=103 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:909,0:0,0,14,15 1/1:0,74:74:99:2356,222,0:0,0,36,38 +chrX 3465761 . A T 656 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=11.43;BaseQRankSum=1.973;DP=93;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=11.43;ReadPosRankSum=-0.442;SOR=0.646;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,605 0/1:35,25:60:99:.:686,0,1026:20,15,14,11 +chrX 3466182 . A ATATATT 4541.97 . AC=3;AF=1.00;AN=3;AS_AltDP=102;AS_QD=31.41;DP=108;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.91;SOR=0.773;VarDP=102 GT:AD:DP:GQ:PL:SB 1:0,38:38:99:1702,0:0,0,17,21 1/1:0,64:64:99:2879,192,0:0,0,32,32 +chrX 3466362 . T C 3087 . AC=3;AF=1.00;AN=3;AS_AltDP=94;AS_QD=33.16;DP=98;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.16;SOR=0.924;VarDP=94 GT:AD:DP:GQ:PL:SB 1:0,34:34:99:1137,0:0,0,18,16 1/1:0,60:60:99:1980,180,0:0,0,34,26 +chrX 3466884 . A T 2189 . AC=3;AF=1.00;AN=3;AS_AltDP=65;AS_QD=34.14;DP=70;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=34.14;SOR=1.000;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,18:18:99:615,0:0,0,9,9 1/1:0,47:47:99:1604,141,0:0,0,19,28 +chrX 3466949 . C CTTTT,CTTTTTT 2132.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=33,9;AS_QD=30.52,26.34;BaseQRankSum=1.651;DP=76;ExcessHet=0.0000;FS=3.324;MQ=56.53;MQRankSum=-0.456;QD=50.51;ReadPosRankSum=-0.935;SOR=0.525;VarDP=43 GT:AD:DP:GQ:PL:SB 1:0,17,0:17:99:636,0,637:0,0,9,8 1/2:1,16,9:26:99:1536,215,130,413,0,333:0,1,14,11 +chrX 3466996 . A C 1507 . AC=3;AF=1.00;AN=3;AS_AltDP=46;AS_QD=33.41;DP=52;ExcessHet=0.0000;FS=0.000;MQ=59.68;QD=33.41;SOR=1.329;VarDP=46 GT:AD:DP:GQ:PL:SB 1:0,15:15:99:500,0:0,0,6,9 1/1:0,31:31:93:1037,93,0:0,0,11,20 +chrX 3467498 . C CA 103.97 . AC=1;AF=0.333;AN=3;AS_AltDP=8;AS_QD=17.88;DP=54;ExcessHet=0.0000;FS=0.000;MQ=57.91;QD=17.88;SOR=1.863;VarDP=8 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,8:8:99:.:143,0:0,0,6,2 0/0:.:35:0:35:0,0,759 +chrX 3469458 . G A 721 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=12.73;BaseQRankSum=2.048;DP=93;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=12.73;ReadPosRankSum=0.502;SOR=0.787;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,432 0/1:32,27:59:99:.:751,0,889:17,15,15,12 +chrX 3470465 . C T 301 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=7.88;BaseQRankSum=0.324;DP=76;ExcessHet=0.0000;FS=6.822;MQ=60.00;MQRankSum=0;QD=7.88;ReadPosRankSum=1.321;SOR=0.687;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,432 0/1:28,14:42:99:.:331,0,762:10,18,8,6 +chrX 3470873 . C CT 452.97 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=10.25;BaseQRankSum=0.46;DP=94;ExcessHet=0.0000;FS=2.479;MQ=60.00;MQRankSum=0;QD=10.25;ReadPosRankSum=-2.112;SOR=1.127;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,432 0/1:26,22:48:99:.:492,0,634:14,12,14,8 +chrX 3471378 . A G 686 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=13.51;BaseQRankSum=1.158;DP=86;ExcessHet=0.0000;FS=1.047;MQ=60.00;MQRankSum=0;QD=13.51;ReadPosRankSum=0.73;SOR=0.790;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,432 0/1:27,26:53:99:.:716,0,675:14,13,12,14 +chrX 3471471 . T C 744 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=18.00;BaseQRankSum=0;DP=76;ExcessHet=0.0000;FS=1.333;MQ=60.00;MQRankSum=0;QD=18.00;ReadPosRankSum=-0.982;SOR=1.140;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,432 0/1:17,26:43:99:.:774,0,462:6,11,7,19 +chrX 3474697 . T A 1479 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=20.12;BaseQRankSum=-1.429;DP=79;ExcessHet=0.0000;FS=2.244;MQ=60.00;MQRankSum=0;QD=20.12;ReadPosRankSum=0.223;SOR=1.133;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:976,0:0,0,19,12 0/1:23,21:44:99:533,0,650:14,9,17,4 +chrX 3474878 . G GAAAGAAAAGAAA 1087.97 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=20.87;BaseQRankSum=-0.795;DP=91;ExcessHet=0.0000;FS=1.055;MQ=60.00;MQRankSum=0;QD=20.87;ReadPosRankSum=-0.373;SOR=0.976;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,372 0/1:25,29:54:99:.:1127,0,941:12,13,12,17 +chrX 3475860 . C A 747 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=14.94;BaseQRankSum=-1.204;DP=83;ExcessHet=0.0000;FS=3.775;MQ=60.00;MQRankSum=0;QD=14.94;ReadPosRankSum=-0.496;SOR=0.612;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,372 0/1:24,28:52:99:.:777,0,668:14,10,13,15 +chrX 3476342 . A AAAG 808.97 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=19.72;BaseQRankSum=0.265;DP=78;ExcessHet=0.0000;FS=4.363;MQ=60.00;MQRankSum=0;QD=19.72;ReadPosRankSum=0.512;SOR=1.080;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,372 0/1:20,23:43:99:.:848,0,711:9,11,14,9 +chrX 3477090 . A T 687 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=13.53;BaseQRankSum=-1.012;DP=87;ExcessHet=0.0000;FS=5.608;MQ=60.00;MQRankSum=0;QD=13.53;ReadPosRankSum=1.166;SOR=1.232;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,372 0/1:26,27:53:99:.:717,0,713:14,12,10,17 +chrX 3478216 . G C 370 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=10.81;BaseQRankSum=-0.827;DP=68;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=10.81;ReadPosRankSum=0.859;SOR=0.532;VarDP=37 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,372 0/1:21,16:37:99:.:400,0,599:14,7,10,6 +chrX 3479083 . A T 597 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=13.63;BaseQRankSum=2.003;DP=80;ExcessHet=0.0000;FS=6.311;MQ=60.00;MQRankSum=0;QD=13.63;ReadPosRankSum=-0.77;SOR=0.517;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,372 0/1:24,22:46:99:.:627,0,641:8,16,12,10 +chrX 3479162 . A ACAG 992.97 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=25.80;BaseQRankSum=-0.366;DP=71;ExcessHet=0.0000;FS=1.302;MQ=60.00;MQRankSum=0;QD=25.80;ReadPosRankSum=0.397;SOR=0.661;VarDP=40 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:31:99:31:.:.:0,372 0|1:14,26:40:99:.:0|1:3479162_A_ACAG:1032,0,473:3479162:6,8,14,12 +chrX 3479164 . C G 1002 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=25.80;BaseQRankSum=-0.069;DP=72;ExcessHet=0.0000;FS=1.302;MQ=60.00;MQRankSum=0;QD=25.80;ReadPosRankSum=0.284;SOR=0.661;VarDP=40 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:31:99:31:.:.:0,372 0|1:14,26:40:99:.:0|1:3479162_A_ACAG:1032,0,473:3479162:6,8,14,12 +chrX 3479989 . AAAG A 764.97 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=17.11;BaseQRankSum=0.794;DP=79;ExcessHet=0.0000;FS=4.110;MQ=60.00;MQRankSum=0;QD=17.11;ReadPosRankSum=1.821;SOR=0.475;VarDP=47 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:31:99:31:.:.:0,372 0|1:26,21:47:99:.:0|1:3479989_AAAG_A:804,0,1028:3479989:10,16,11,10 +chrX 3480375 . C CT 351.97 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=11.17;BaseQRankSum=0.484;DP=83;ExcessHet=0.0000;FS=1.377;MQ=60.00;MQRankSum=0;QD=11.17;ReadPosRankSum=0.167;SOR=0.357;VarDP=35 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,372 0/1:15,20:35:99:.:391,0,277:5,10,9,11 +chrX 3481019 . G A 598 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=11.63;BaseQRankSum=2.522;DP=85;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=11.63;ReadPosRankSum=0.735;SOR=0.713;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,372 0/1:31,23:54:99:.:628,0,785:16,15,12,11 +chrX 3481174 . C T 1077 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=31.63;BaseQRankSum=-0.269;DP=100;ExcessHet=0.0000;FS=3.680;MQ=59.80;MQRankSum=0;QD=31.63;ReadPosRankSum=-0.594;SOR=0.793;VarDP=35 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,34:35:99:.:1107,0:1,0,14,20 0/0:.:63:99:63:0,120,1800 +chrX 3481819 . AT A,ATTT 98.97 . AC=1,0;AF=0.333,0.00;AN=3;AS_AltDP=12,0;AS_QD=5.31,0.00;BaseQRankSum=0.366;DP=84;ExcessHet=0.0000;FS=1.770;MQ=59.68;MQRankSum=0;QD=5.31;ReadPosRankSum=0.721;SOR=0.307;VarDP=26 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,566,566 0/1:14,12,0:26:99:.:138,0,310,215,270,765:3,11,4,8 +chrX 3482025 . T C 267 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=9.90;BaseQRankSum=0.193;DP=63;ExcessHet=0.0000;FS=3.399;MQ=60.00;MQRankSum=0;QD=9.90;ReadPosRankSum=-0.254;SOR=0.799;VarDP=30 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,566 0/1:18,12:30:99:.:297,0,485:11,7,5,7 +chrX 3482452 . C A 1562 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=20.68;BaseQRankSum=0.601;DP=79;ExcessHet=0.0000;FS=10.404;MQ=60.00;MQRankSum=0;QD=20.68;ReadPosRankSum=2.41;SOR=1.079;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:1052,0:0,0,19,13 0/1:25,20:45:99:540,0,690:10,15,13,7 +chrX 3482475 . G A 534 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=12.82;BaseQRankSum=3.46;DP=66;ExcessHet=0.0000;FS=6.473;MQ=60.00;MQRankSum=0;QD=12.82;ReadPosRankSum=0.861;SOR=0.907;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:27:26:19:0,26 0/1:24,20:44:99:.:564,0,577:15,9,8,12 +chrX 3482715 . CT C,CTTTTTTTT 399.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=5,10;AS_QD=12.00,26.94;DP=57;ExcessHet=0.0000;FS=0.000;MQ=56.55;QD=29.27;SOR=1.473;VarDP=15 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:27:26:19:0,26,26 1/2:0,5,10:15:76:.:439,379,477,76,0,161:0,0,10,5 +chrX 3482954 . C T 1528 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=19.72;BaseQRankSum=1.627;DP=85;ExcessHet=0.0000;FS=0.893;MQ=60.00;MQRankSum=0;QD=19.72;ReadPosRankSum=0.463;SOR=0.900;VarDP=79 GT:AD:DP:GQ:PL:SB 1:1,29:30:99:970,0:0,1,15,14 0/1:27,22:49:99:588,0,686:14,13,8,14 +chrX 3483463 . A G 701 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=11.98;BaseQRankSum=-0.017;DP=95;ExcessHet=0.0000;FS=5.223;MQ=60.00;MQRankSum=0;QD=11.98;ReadPosRankSum=-1.017;SOR=0.278;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:33:99:33:0,620 0/1:31,30:61:99:.:731,0,751:21,10,16,14 +chrX 3483702 . TTTCTTTCTTTC T 689.97 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=19.18;BaseQRankSum=0.08;DP=74;ExcessHet=0.0000;FS=3.053;MQ=58.72;MQRankSum=1.81;QD=19.18;ReadPosRankSum=2.347;SOR=0.250;VarDP=38 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:33:99:33:0,620 0/1:19,19:38:99:.:729,0,710:5,14,8,11 +chrX 3483706 . TTTCTTTCTTTCTTTCTTTC T,* 2214.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=36,19;AS_QD=26.49,0.00;DP=60;ExcessHet=0.0000;FS=0.000;MQ=58.78;QD=40.98;SOR=1.609;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,18,0:18:99:749,0,749:0,0,6,12 1/2:0,18,19:37:99:1505,784,762,724,0,707:0,0,12,25 +chrX 3483800 . TTC T 454.97 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=14.53;BaseQRankSum=1.055;DP=53;ExcessHet=0.0000;FS=8.500;MQ=58.56;MQRankSum=0.896;QD=14.53;ReadPosRankSum=0.595;SOR=2.303;VarDP=34 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:17:99:17:0,264 0/1:20,14:34:99:.:494,0,737:8,12,2,12 +chrX 3483896 . CCTTT C 401.97 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=16.96;BaseQRankSum=0.627;DP=47;ExcessHet=0.0000;FS=0.000;MQ=59.90;MQRankSum=-1.003;QD=16.96;ReadPosRankSum=-1.333;SOR=0.829;VarDP=26 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:17:99:17:0,264 0/1:14,12:26:99:.:441,0,492:4,10,3,9 +chrX 3484002 . C CTTCTTTCTTTCT,CTTCTTTCTTTTT 489.97 . AC=1,0;AF=0.333,0.00;AN=3;AS_AltDP=14,0;AS_QD=23.00,8.22;BaseQRankSum=-0.904;DP=59;ExcessHet=0.0000;FS=11.129;MQ=59.19;MQRankSum=-1.095;QD=23.00;ReadPosRankSum=0.378;SOR=2.233;VarDP=23 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:17:99:17:0,264,264 0/1:9,14,0:23:99:.:529,0,356,455,413,1183:6,3,3,11 +chrX 3484057 . C CTTTCTTT,CTTT 1089.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=14,16;AS_QD=17.48,15.77;BaseQRankSum=-2.288;DP=58;ExcessHet=0.0000;FS=6.230;MQ=59.11;MQRankSum=-0.082;QD=23.04;ReadPosRankSum=-0.19;SOR=1.206;VarDP=49 GT:AD:DP:GQ:PL:SB 1:0,14,0:14:99:577,0,577:0,0,8,6 0/2:19,0,16:35:99:552,609,1371,0,762,714:8,11,11,5 +chrX 3484490 . A T 2678 . AC=3;AF=1.00;AN=3;AS_AltDP=85;AS_QD=31.86;DP=90;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.86;SOR=0.815;VarDP=85 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:818,0:0,0,11,15 1/1:0,59:59:99:1890,176,0:0,0,34,25 +chrX 3484638 . T A 2922 . AC=3;AF=1.00;AN=3;AS_AltDP=90;AS_QD=32.44;BaseQRankSum=2.646;DP=95;ExcessHet=0.0000;FS=3.156;MQ=60.00;MQRankSum=0;QD=32.44;ReadPosRankSum=1.453;SOR=0.365;VarDP=91 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:928,0:0,0,15,14 1/1:1,61:62:99:2024,162,0:1,0,28,33 +chrX 3484707 . A G 1151 . AC=1;AF=0.333;AN=3;AS_AltDP=40;AS_QD=17.89;BaseQRankSum=1.933;DP=97;ExcessHet=0.0000;FS=9.048;MQ=60.00;MQRankSum=0;QD=17.89;ReadPosRankSum=-1.076;SOR=0.177;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:27:99:27:0,596 0/1:26,40:66:99:.:1181,0,665:7,19,19,21 +chrX 3485351 . C T 822 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=12.72;BaseQRankSum=1.751;DP=95;ExcessHet=0.0000;FS=3.305;MQ=60.00;MQRankSum=0;QD=12.72;ReadPosRankSum=-0.578;SOR=0.613;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:27:99:27:0,596 0/1:35,32:67:99:.:852,0,855:20,15,15,17 +chrX 3486051 . A G 1689 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=21.49;BaseQRankSum=0;DP=82;ExcessHet=0.0000;FS=0.931;MQ=60.00;MQRankSum=0;QD=21.49;ReadPosRankSum=0.179;SOR=0.836;VarDP=80 GT:AD:DP:GQ:PL:SB 1:1,28:29:99:929,0:1,0,14,14 0/1:21,30:51:99:790,0,578:10,11,13,17 +chrX 3486140 . A C 1564 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=22.45;BaseQRankSum=2.617;DP=73;ExcessHet=0.0000;FS=5.309;MQ=60.00;MQRankSum=0;QD=22.45;ReadPosRankSum=-0.349;SOR=0.431;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,22:22:99:698,0:0,0,10,12 0/1:19,30:49:99:896,0,473:12,7,15,15 +chrX 3486736 . A G 760 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=12.34;BaseQRankSum=-1.276;DP=99;ExcessHet=0.0000;FS=0.968;MQ=59.07;MQRankSum=-0.606;QD=12.34;ReadPosRankSum=-1.035;SOR=0.859;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,649 0/1:33,31:64:99:.:790,0,886:20,13,20,11 +chrX 3487271 . TATATATTATTATGTACAATAATATATAATATATTATTATGTACAATAATATATA T 1929.97 . AC=2;AF=0.667;AN=3;AS_AltDP=48;AS_QD=25.57;BaseQRankSum=-0.235;DP=107;ExcessHet=0.0000;FS=6.211;MQ=59.04;MQRankSum=-2.0;QD=25.57;ReadPosRankSum=0.775;SOR=0.575;VarDP=77 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,18:18:99:.:.:806,0:.:0,0,13,5 0|1:29,30:59:99:0|1:3487271_TATATATTATTATGTACAATAATATATAATATATTATTATGTACAATAATATATA_T:1163,0,1118:3487271:11,18,13,17 +chrX 3487358 . TTA T 533.97 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=9.24;BaseQRankSum=-0.605;DP=96;ExcessHet=0.0000;FS=0.000;MQ=58.68;MQRankSum=1.537;QD=9.24;ReadPosRankSum=-0.088;SOR=0.767;VarDP=62 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:34:99:34:.:.:0,178 0|1:40,22:62:99:.:1|0:3487271_TATATATTATTATGTACAATAATATATAATATATTATTATGTACAATAATATATA_T:573,0,1585:3487271:19,21,10,12 +chrX 3487362 . GTACAATAATATATAATATATTA G 514.97 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=8.03;BaseQRankSum=-0.333;DP=104;ExcessHet=0.0000;FS=0.956;MQ=58.84;MQRankSum=1.415;QD=8.03;ReadPosRankSum=-0.037;SOR=0.827;VarDP=69 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:34:99:34:.:.:0,178 0|1:47,22:69:99:.:1|0:3487271_TATATATTATTATGTACAATAATATATAATATATTATTATGTACAATAATATATA_T:554,0,1753:3487271:23,24,10,12 +chrX 3487568 . A T 570 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=10.00;BaseQRankSum=1.56;DP=96;ExcessHet=0.0000;FS=5.366;MQ=60.00;MQRankSum=0;QD=10.00;ReadPosRankSum=0.7;SOR=0.744;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:34:99:34:0,178 0/1:37,23:60:99:.:600,0,984:22,15,10,13 +chrX 3487626 . T C 488 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=9.42;BaseQRankSum=-2.304;DP=92;ExcessHet=0.0000;FS=5.479;MQ=60.00;MQRankSum=0;QD=9.42;ReadPosRankSum=-0.521;SOR=0.747;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:34:99:34:0,178 0/1:32,23:55:99:.:518,0,895:19,13,10,13 +chrX 3488003 . CATATA C 695.97 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=18.38;BaseQRankSum=-0.421;DP=80;ExcessHet=0.0000;FS=9.923;MQ=60.00;MQRankSum=0;QD=18.38;ReadPosRankSum=2.322;SOR=0.289;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:34:99:34:0,178 0/1:21,19:40:99:.:735,0,824:5,16,10,9 +chrX 3488049 . A G 1186 . AC=2;AF=0.667;AN=3;AS_AltDP=48;AS_QD=16.89;BaseQRankSum=1.307;DP=73;ExcessHet=0.0000;FS=0.939;MQ=60.00;MQRankSum=0;QD=16.89;ReadPosRankSum=-0.455;SOR=0.551;VarDP=72 GT:AD:DP:GQ:PL:SB 1:1,29:30:99:772,0:0,1,16,13 0/1:23,19:42:99:444,0,879:11,12,8,11 +chrX 3488065 . TATA T 768.97 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=19.24;BaseQRankSum=-2.004;DP=74;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=19.24;ReadPosRankSum=0.3;SOR=0.693;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,305 0/1:21,21:42:99:.:808,0,809:9,12,9,12 +chrX 3488109 . C T 523 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=10.84;BaseQRankSum=-0.296;DP=83;ExcessHet=0.0000;FS=0.000;MQ=59.04;MQRankSum=0.092;QD=10.84;ReadPosRankSum=-1.313;SOR=0.801;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,305 0/1:29,22:51:99:.:553,0,750:14,15,10,12 +chrX 3488752 . TATA T 755.97 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=17.67;BaseQRankSum=-0.581;DP=77;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=17.67;ReadPosRankSum=1.457;SOR=0.784;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,305 0/1:24,21:45:99:.:795,0,934:12,12,10,11 +chrX 3488863 . CACTT C 648.97 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=16.38;BaseQRankSum=-0.344;DP=73;ExcessHet=0.0000;FS=1.172;MQ=60.00;MQRankSum=0;QD=16.38;ReadPosRankSum=-2.211;SOR=0.922;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,305 0/1:23,19:42:99:.:688,0,897:11,12,8,11 +chrX 3489131 . T C 883 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=18.26;BaseQRankSum=0.549;DP=82;ExcessHet=0.0000;FS=2.434;MQ=60.00;MQRankSum=0;QD=18.26;ReadPosRankSum=0.76;SOR=0.490;VarDP=50 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:31:99:31:.:.:0,305 0|1:25,25:50:99:.:0|1:3489131_T_C:913,0,893:3489131:10,15,13,12 +chrX 3489150 . A G 861 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=19.37;BaseQRankSum=-1.68;DP=77;ExcessHet=0.0000;FS=4.040;MQ=60.00;MQRankSum=0;QD=19.37;ReadPosRankSum=1.211;SOR=0.627;VarDP=46 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:31:99:31:.:.:0,305 0|1:22,24:46:99:.:0|1:3489131_T_C:891,0,831:3489131:9,13,13,11 +chrX 3489318 . G A 300 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=11.38;BaseQRankSum=-1.642;DP=63;ExcessHet=0.0000;FS=1.485;MQ=60.00;MQRankSum=0;QD=11.38;ReadPosRankSum=0.349;SOR=1.110;VarDP=29 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,305 0/1:14,15:29:99:.:330,0,379:8,6,10,5 +chrX 3489570 . C T 883 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=31.48;DP=86;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.48;SOR=0.760;VarDP=29 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,29:29:99:.:913,0:0,0,15,14 0/0:.:55:63:55:0,63,758 +chrX 3490774 . T C 963 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=16.28;BaseQRankSum=-2.915;DP=91;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=16.28;ReadPosRankSum=0.066;SOR=0.592;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,625 0/1:24,37:61:99:.:993,0,651:15,9,22,15 +chrX 3491239 . C A 629 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=11.98;BaseQRankSum=0.41;DP=86;ExcessHet=0.0000;FS=1.038;MQ=60.00;MQRankSum=0;QD=11.98;ReadPosRankSum=1.087;SOR=0.810;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,625 0/1:31,24:55:99:.:659,0,877:16,15,11,13 +chrX 3491296 . T C 564 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=10.80;BaseQRankSum=0.467;DP=84;ExcessHet=0.0000;FS=2.310;MQ=60.00;MQRankSum=0;QD=10.80;ReadPosRankSum=0.205;SOR=0.880;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,625 0/1:32,23:55:99:.:594,0,862:15,17,13,10 +chrX 3491523 . C T 1968 . AC=2;AF=0.667;AN=3;AS_AltDP=65;AS_QD=20.60;BaseQRankSum=1.079;DP=101;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=20.60;ReadPosRankSum=-2.713;SOR=0.667;VarDP=97 GT:AD:DP:GQ:PL:SB 1:0,35:35:99:1197,0:0,0,17,18 0/1:32,30:62:99:801,0,845:18,14,19,11 +chrX 3491699 . G A 2343 . AC=3;AF=1.00;AN=3;AS_AltDP=71;AS_QD=33.42;DP=75;ExcessHet=0.0000;FS=0.000;MQ=59.41;QD=33.42;SOR=0.971;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:859,0:0,0,12,14 1/1:0,45:45:99:1514,135,0:0,0,19,26 +chrX 3491936 . G A 2737 . AC=3;AF=1.00;AN=3;AS_AltDP=82;AS_QD=33.74;DP=86;ExcessHet=0.0000;FS=0.000;MQ=59.88;QD=33.74;SOR=0.793;VarDP=82 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:1104,0:0,0,17,16 1/1:0,49:49:99:1663,147,0:0,0,22,27 +chrX 3492628 . A G 624 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=11.28;BaseQRankSum=-2.752;DP=87;ExcessHet=0.0000;FS=11.980;MQ=60.00;MQRankSum=0;QD=11.28;ReadPosRankSum=0.008;SOR=0.814;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,462 0/1:31,27:58:99:.:654,0,894:21,10,11,16 +chrX 3492787 . G C 750 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=13.93;BaseQRankSum=-2.295;DP=87;ExcessHet=0.0000;FS=2.302;MQ=60.00;MQRankSum=0;QD=13.93;ReadPosRankSum=-0.025;SOR=0.412;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,462 0/1:26,30:56:99:.:780,0,726:9,17,13,17 +chrX 3494492 . C T 1952 . AC=2;AF=0.667;AN=3;AS_AltDP=66;AS_QD=22.02;BaseQRankSum=-0.197;DP=92;ExcessHet=0.0000;FS=3.278;MQ=60.00;MQRankSum=0;QD=22.02;ReadPosRankSum=-1.748;SOR=1.196;VarDP=90 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:908,0:0,0,15,12 0/1:24,39:63:99:1074,0,595:12,12,25,14 +chrX 3495553 . T C 1412 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=18.25;BaseQRankSum=-1.887;DP=81;ExcessHet=0.0000;FS=1.960;MQ=59.93;MQRankSum=0;QD=18.25;ReadPosRankSum=0.143;SOR=0.443;VarDP=79 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:794,0:0,0,11,13 0/1:28,27:55:99:648,0,758:11,17,13,14 +chrX 3495823 . A G 1773 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=21.46;BaseQRankSum=-0.705;DP=87;ExcessHet=0.0000;FS=0.945;MQ=57.06;MQRankSum=0.616;QD=21.46;ReadPosRankSum=-0.071;SOR=0.615;VarDP=84 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:829,0:0,0,15,10 0/1:22,37:59:99:974,0,523:10,12,17,20 +chrX 3496584 . G T 1376 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=17.36;BaseQRankSum=1.081;DP=84;ExcessHet=0.0000;FS=9.163;MQ=57.45;MQRankSum=2.387;QD=17.36;ReadPosRankSum=-0.537;SOR=0.468;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:861,0:0,0,15,11 0/1:34,21:55:99:545,0,942:12,22,10,11 +chrX 3496669 . C T 1827 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=23.81;BaseQRankSum=-1.127;DP=85;ExcessHet=0.0000;FS=1.023;MQ=60.00;MQRankSum=0;QD=23.81;ReadPosRankSum=0.939;SOR=0.998;VarDP=78 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:1013,0:0,0,16,14 0/1:19,29:48:99:844,0,514:10,9,19,10 +chrX 3497669 . G T 1512 . AC=2;AF=0.667;AN=3;AS_AltDP=49;AS_QD=22.68;BaseQRankSum=0.831;DP=72;ExcessHet=0.0000;FS=9.687;MQ=59.93;MQRankSum=0;QD=22.68;ReadPosRankSum=-0.807;SOR=0.549;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:848,0:0,0,12,13 0/1:19,24:43:99:694,0,510:6,13,15,9 +chrX 3498111 . A G 896 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=14.25;BaseQRankSum=-0.515;DP=102;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.25;ReadPosRankSum=-0.519;SOR=0.735;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:33:99:33:0,843 0/1:31,34:65:99:.:926,0,842:17,14,19,15 +chrX 3498397 . G A 1029 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=32.09;DP=91;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.09;SOR=0.752;VarDP=33 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,33:33:99:.:1059,0:0,0,16,17 0/0:.:57:95:57:0,95,1306 +chrX 3499212 . G T 958 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=32.93;DP=88;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.93;SOR=0.693;VarDP=30 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,30:30:99:.:988,0:0,0,15,15 0/0:.:57:95:57:0,95,1306 +chrX 3499332 . A G 739 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=13.26;BaseQRankSum=-2.079;DP=88;ExcessHet=0.0000;FS=5.212;MQ=60.00;MQRankSum=0;QD=13.26;ReadPosRankSum=1.525;SOR=0.289;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,411 0/1:28,30:58:99:.:769,0,774:10,18,15,15 +chrX 3499504 . G T 538 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=10.14;BaseQRankSum=0.742;DP=87;ExcessHet=0.0000;FS=3.751;MQ=60.00;MQRankSum=0;QD=10.14;ReadPosRankSum=0.708;SOR=1.145;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,411 0/1:33,23:56:99:.:568,0,834:17,16,9,14 +chrX 3501146 . T C 839 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=13.58;BaseQRankSum=-1.28;DP=93;ExcessHet=0.0000;FS=2.043;MQ=60.00;MQRankSum=0;QD=13.58;ReadPosRankSum=0.007;SOR=0.475;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,411 0/1:31,33:64:99:.:869,0,855:18,13,17,16 +chrX 3501947 . T C 759 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=16.44;BaseQRankSum=-2.076;DP=78;ExcessHet=0.0000;FS=1.134;MQ=60.00;MQRankSum=0;QD=16.44;ReadPosRankSum=0.896;SOR=0.950;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,411 0/1:19,29:48:99:.:789,0,516:10,9,17,12 +chrX 3502237 . CA C 2040.97 . AC=3;AF=1.00;AN=3;AS_AltDP=73;AS_QD=28.49;DP=89;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=28.49;SOR=0.776;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:716,0:0,0,13,12 1/1:0,48:48:99:1364,144,0:0,0,25,23 +chrX 3503102 . G A 665 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=12.41;BaseQRankSum=0.458;DP=88;ExcessHet=0.0000;FS=1.031;MQ=59.87;MQRankSum=0;QD=12.41;ReadPosRankSum=-2.145;SOR=0.473;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,591 0/1:30,26:56:99:.:695,0,814:17,13,13,13 +chrX 3503278 . C T 794 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=13.08;BaseQRankSum=1.608;DP=95;ExcessHet=0.0000;FS=0.962;MQ=60.00;MQRankSum=0;QD=13.08;ReadPosRankSum=-0.378;SOR=0.883;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,591 0/1:31,32:63:99:.:824,0,693:17,14,19,13 +chrX 3503318 . A G 781 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=13.52;BaseQRankSum=-1.355;DP=91;ExcessHet=0.0000;FS=2.191;MQ=60.00;MQRankSum=0;QD=13.52;ReadPosRankSum=0.764;SOR=1.112;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,591 0/1:28,32:60:99:.:811,0,754:14,14,13,19 +chrX 3503378 . G A 886 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=13.88;BaseQRankSum=0.41;DP=99;ExcessHet=0.0000;FS=0.000;MQ=59.74;MQRankSum=1.061;QD=13.88;ReadPosRankSum=-1.56;SOR=0.658;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,591 0/1:32,34:66:99:.:916,0,863:11,21,12,22 +chrX 3503478 . C T 2788 . AC=3;AF=1.00;AN=3;AS_AltDP=87;AS_QD=32.39;DP=92;ExcessHet=0.0000;FS=0.000;MQ=59.95;QD=32.39;SOR=0.716;VarDP=87 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:952,0:0,0,17,13 1/1:0,57:57:99:1866,171,0:0,0,26,31 +chrX 3503581 . A G 1750 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=21.45;BaseQRankSum=1.822;DP=89;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=21.45;ReadPosRankSum=-1.922;SOR=0.800;VarDP=83 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:1003,0:0,0,15,15 0/1:26,27:53:99:777,0,714:13,13,12,15 +chrX 3503626 . C T 654 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=11.79;BaseQRankSum=-1.12;DP=96;ExcessHet=0.0000;FS=3.667;MQ=60.00;MQRankSum=0;QD=11.79;ReadPosRankSum=0.086;SOR=0.722;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:36:99:36:0,898 0/1:31,27:58:99:.:684,0,838:18,13,12,15 +chrX 3504088 . G C 1409 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=20.56;BaseQRankSum=0.473;DP=75;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=20.56;ReadPosRankSum=-0.618;SOR=0.770;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:872,0:0,0,14,15 0/1:18,23:41:99:567,0,408:9,9,11,12 +chrX 3505309 . A G 1656 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=22.18;BaseQRankSum=0.694;DP=76;ExcessHet=0.0000;FS=2.172;MQ=60.00;MQRankSum=0;QD=22.18;ReadPosRankSum=-0.836;SOR=1.095;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:1011,0:0,0,12,18 0/1:22,24:46:99:675,0,597:10,12,8,16 +chrX 3506302 . CAAAAAA C,CAAAAA,CAAAAAAA 767.97 . AC=1,1,1;AF=0.333,0.333,0.333;AN=3;AS_AltDP=15,5,15;AS_QD=28.90,0.90,10.00;BaseQRankSum=0.696;DP=71;ExcessHet=0.0000;FS=2.000;MQ=59.21;MQRankSum=-0.183;QD=20.18;ReadPosRankSum=0.302;SOR=0.243;VarDP=40 GT:AD:DP:GQ:PL:SB 1:2,15,0,0:17:99:578,0,611,611:0,2,6,9 2/3:3,0,5,15:23:29:229,279,395,220,353,414,29,82,0,38:1,2,9,11 +chrX 3508097 . CT C 1080.97 . AC=2;AF=0.667;AN=3;AS_AltDP=44;AS_QD=15.56;BaseQRankSum=1.178;DP=87;ExcessHet=0.0000;FS=4.711;MQ=60.00;MQRankSum=0;QD=15.56;ReadPosRankSum=-0.901;SOR=1.024;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:744,0:0,0,16,10 0/1:28,18:46:99:376,0,657:13,15,10,8 +chrX 3508582 . C T 1986 . AC=2;AF=0.667;AN=3;AS_AltDP=66;AS_QD=21.91;BaseQRankSum=0.373;DP=94;ExcessHet=0.0000;FS=0.859;MQ=59.94;MQRankSum=0;QD=21.91;ReadPosRankSum=1.497;SOR=0.818;VarDP=92 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:1087,0:0,0,16,17 0/1:26,33:59:99:929,0,686:13,13,15,18 +chrX 3509590 . C T 1849 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=18.98;BaseQRankSum=-0.623;DP=101;ExcessHet=0.0000;FS=0.773;MQ=60.00;MQRankSum=0;QD=18.98;ReadPosRankSum=0.636;SOR=0.711;VarDP=99 GT:AD:DP:GQ:PL:SB 1:0,42:42:99:1390,0:0,0,26,16 0/1:37,20:57:99:489,0,1090:18,19,6,14 +chrX 3511598 . C CA 626.97 . AC=2;AF=0.667;AN=3;AS_AltDP=33;AS_QD=15.86;BaseQRankSum=-1.638;DP=63;ExcessHet=0.0000;FS=1.464;MQ=58.54;MQRankSum=-1.023;QD=15.86;ReadPosRankSum=-3.252;SOR=0.744;VarDP=42 GT:AD:DP:GQ:PL:SB 1:0,17:17:99:392,0:0,0,9,8 0/1:9,16:25:99:274,0,131:5,4,6,10 +chrX 3514032 . G A 1774 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=20.04;BaseQRankSum=0.766;DP=92;ExcessHet=0.0000;FS=5.832;MQ=60.00;MQRankSum=0;QD=20.04;ReadPosRankSum=0.655;SOR=0.806;VarDP=90 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:814,0:0,0,11,13 0/1:28,38:66:99:990,0,601:12,16,24,14 +chrX 3514410 . G T 3111 . AC=3;AF=1.00;AN=3;AS_AltDP=93;AS_QD=33.77;DP=98;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.77;SOR=0.804;VarDP=93 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:1075,0:0,0,12,21 1/1:0,60:60:99:2066,181,0:0,0,32,28 +chrX 3514471 . T A 1802 . AC=2;AF=0.667;AN=3;AS_AltDP=64;AS_QD=18.51;BaseQRankSum=1.992;DP=104;ExcessHet=0.0000;FS=12.575;MQ=60.00;MQRankSum=0;QD=18.51;ReadPosRankSum=1.084;SOR=0.165;VarDP=99 GT:AD:DP:GQ:PL:SB 1:1,31:32:99:972,0:1,0,12,19 0/1:34,33:67:99:860,0,910:24,10,20,13 +chrX 3515214 . C A 1098 . AC=2;AF=0.667;AN=3;AS_AltDP=39;AS_QD=14.65;BaseQRankSum=0.302;DP=80;ExcessHet=0.0000;FS=0.882;MQ=59.99;MQRankSum=0.708;QD=14.65;ReadPosRankSum=-0.118;SOR=0.541;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,22:22:99:735,0:0,0,13,9 0/1:38,17:55:99:393,0,1074:24,14,10,7 +chrX 3515703 . CATCT C 1374.97 . AC=2;AF=0.667;AN=3;AS_AltDP=32;AS_QD=33.09;DP=76;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.19;SOR=0.818;VarDP=32 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,601 1/1:0,32:32:97:.:1414,97,0:0,0,17,15 +chrX 3515804 . ATATC A 1951.97 . AC=2;AF=0.667;AN=3;AS_AltDP=48;AS_QD=26.91;BaseQRankSum=-0.217;DP=84;ExcessHet=0.0000;FS=2.020;MQ=60.00;MQRankSum=0;QD=26.91;ReadPosRankSum=0.458;SOR=0.446;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:1114,0:0,0,13,12 0/1:26,23:49:99:877,0,1001:15,11,11,12 +chrX 3516827 . AT A,ATT 83.97 . AC=2,0;AF=0.667,0.00;AN=3;AS_AltDP=10,1;AS_QD=6.83,0.00;BaseQRankSum=0;DP=58;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=6.47;ReadPosRankSum=0;SOR=0.859;VarDP=19 GT:AD:DP:GQ:PL:SB 1:1,6,0:7:93:93,0,103:1,0,3,3 0/1:7,4,1:12:30:30,0,197,45,99,188:3,4,2,3 +chrX 3517358 . C G 1318 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=18.99;BaseQRankSum=-0.992;DP=74;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=18.99;ReadPosRankSum=0.922;SOR=0.756;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:828,0:0,0,18,8 0/1:24,21:45:99:520,0,659:14,10,10,11 +chrX 3517568 . C T 1643 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=19.92;BaseQRankSum=0.812;DP=85;ExcessHet=0.0000;FS=4.486;MQ=60.00;MQRankSum=0;QD=19.92;ReadPosRankSum=0.01;SOR=0.742;VarDP=84 GT:AD:DP:GQ:PL:SB 1:0,34:34:99:1096,0:0,0,17,17 0/1:28,22:50:99:577,0,771:12,16,14,8 +chrX 3518514 . G A 1486 . AC=2;AF=0.667;AN=3;AS_AltDP=50;AS_QD=18.27;BaseQRankSum=2.07;DP=84;ExcessHet=0.0000;FS=1.817;MQ=60.00;MQRankSum=0;QD=18.27;ReadPosRankSum=-1.039;SOR=0.504;VarDP=83 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:958,0:0,0,15,14 0/1:33,21:54:99:558,0,895:14,19,9,12 +chrX 3519303 . TGAGA T,TGA 2325.97 . AC=0,2;AF=0.00,0.667;AN=3;AS_AltDP=0,51;AS_QD=27.62,32.85;BaseQRankSum=-1.559;DP=93;ExcessHet=0.0000;FS=0.000;MQ=59.95;MQRankSum=0;QD=32.85;ReadPosRankSum=0.034;SOR=0.801;VarDP=72 GT:AD:DP:GQ:PL:SB 2:0,0,26:26:99:1255,951,0:0,0,14,12 0/2:21,0,25:46:99:1110,834,1758,0,881,975:11,10,14,11 +chrX 3519307 . A *,T 2335 . AC=0,2;AF=0.00,0.667;AN=3;AS_AltDP=0,51;AS_QD=0.00,32.85;BaseQRankSum=-1.873;DP=93;ExcessHet=0.0000;FS=0.000;MQ=59.95;MQRankSum=0;QD=32.85;ReadPosRankSum=0.166;SOR=0.801;VarDP=72 GT:AD:DP:GQ:PL:SB 2:0,0,26:26:99:1255,951,0:0,0,14,12 0/2:21,0,25:46:99:1110,834,1758,0,881,975:11,10,14,11 +chrX 3519397 . C T 2088 . AC=2;AF=0.667;AN=3;AS_AltDP=71;AS_QD=21.39;BaseQRankSum=-0.741;DP=104;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=21.39;ReadPosRankSum=0.775;SOR=0.697;VarDP=99 GT:AD:DP:GQ:PL:SB 1:0,36:36:99:1166,0:0,0,15,21 0/1:28,35:63:99:952,0,754:13,15,18,17 +chrX 3520904 . G A 1753 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=21.23;BaseQRankSum=1.652;DP=86;ExcessHet=0.0000;FS=4.904;MQ=60.00;MQRankSum=0;QD=21.23;ReadPosRankSum=0.231;SOR=0.287;VarDP=84 GT:AD:DP:GQ:PL:SB 1:2,36:38:99:1157,0:2,0,23,13 0/1:22,24:46:99:626,0,595:15,7,11,13 +chrX 3521958 . C G 2163 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=23.33;BaseQRankSum=2.042;DP=96;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=23.33;ReadPosRankSum=1.832;SOR=0.767;VarDP=94 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,29:29:99:.:.:1274,0:.:0,0,15,14 0|1:40,25:65:99:0|1:3521958_C_G:919,0,1532:3521958:20,20,13,12 +chrX 3521962 . G A 2150 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=23.19;BaseQRankSum=1.162;DP=97;ExcessHet=0.0000;FS=0.783;MQ=60.00;MQRankSum=0;QD=23.19;ReadPosRankSum=0.657;SOR=0.846;VarDP=94 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,28:28:99:.:.:1239,0:.:0,0,15,13 0|1:40,26:66:99:0|1:3521958_C_G:941,0,1529:3521958:20,20,14,12 +chrX 3523023 . A C 1578 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=21.73;BaseQRankSum=-1.208;DP=77;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=21.73;ReadPosRankSum=0.411;SOR=0.802;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:854,0:0,0,8,18 0/1:19,29:48:99:754,0,476:8,11,14,15 +chrX 3523607 . C T 1328 . AC=2;AF=0.667;AN=3;AS_AltDP=48;AS_QD=17.19;BaseQRankSum=-0.806;DP=81;ExcessHet=0.0000;FS=0.851;MQ=60.00;MQRankSum=0;QD=17.19;ReadPosRankSum=0.641;SOR=0.596;VarDP=79 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:834,0:0,0,13,13 0/1:31,22:53:99:524,0,838:14,17,10,12 +chrX 3523879 . T C 1575 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=19.57;BaseQRankSum=0.82;DP=85;ExcessHet=0.0000;FS=0.904;MQ=60.00;MQRankSum=0;QD=19.57;ReadPosRankSum=-1.458;SOR=0.519;VarDP=82 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:963,0:0,0,17,11 0/1:29,25:54:99:642,0,756:19,10,15,10 +chrX 3524198 . C CT 1405.97 . AC=2;AF=0.667;AN=3;AS_AltDP=46;AS_QD=21.57;BaseQRankSum=-0.4;DP=76;ExcessHet=0.0000;FS=0.000;MQ=59.78;MQRankSum=0;QD=21.57;ReadPosRankSum=-0.353;SOR=0.666;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:1076,0:0,0,10,20 0/1:21,16:37:99:369,0,680:7,14,6,10 +chrX 3524199 . C T,CT 1604 . AC=2,0;AF=0.667,0.00;AN=3;AS_AltDP=46,2;AS_QD=26.35,8.00;BaseQRankSum=1.65;DP=74;ExcessHet=0.0000;FS=0.000;MQ=59.77;MQRankSum=0;QD=25.53;ReadPosRankSum=-0.449;SOR=0.582;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,30,0:30:99:1076,0,1076:0,0,10,20 0/1:16,16,2:34:99:558,0,633,414,248,619:5,11,7,11 +chrX 3524347 . G A 1423 . AC=2;AF=0.667;AN=3;AS_AltDP=49;AS_QD=18.87;BaseQRankSum=-1.092;DP=80;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=18.87;ReadPosRankSum=-0.811;SOR=0.758;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:878,0:0,0,10,17 0/1:28,22:50:99:575,0,787:13,15,12,10 +chrX 3524626 . C CCACCAT 354.97 . AC=1;AF=0.333;AN=3;AS_AltDP=10;AS_QD=26.27;BaseQRankSum=0;DP=99;ExcessHet=0.0000;FS=0.000;MQ=55.19;MQRankSum=-0.566;QD=26.27;ReadPosRankSum=1.102;SOR=1.179;VarDP=15 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:70:99:70:0,720 0/1:5,10:15:99:.:394,0,150:2,3,3,7 +chrX 3524710 . T TCACCAC 830.97 . AC=2;AF=0.667;AN=3;AS_AltDP=27;AS_QD=22.31;BaseQRankSum=2.241;DP=64;ExcessHet=0.0000;FS=0.000;MQ=49.99;MQRankSum=2.359;QD=22.31;ReadPosRankSum=0.18;SOR=0.919;VarDP=39 GT:AD:DP:GQ:PL:SB 1:2,19:21:99:644,0:1,1,13,6 0/1:10,8:18:99:226,0,308:6,4,4,4 +chrX 3524764 . T TCACCATCACCACCAC 430.97 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=22.38;BaseQRankSum=1.418;DP=63;ExcessHet=0.0000;FS=0.000;MQ=54.31;MQRankSum=-1.066;QD=22.38;ReadPosRankSum=-1.088;SOR=1.022;VarDP=21 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:23:99:23:0,550 0/1:8,13:21:99:.:470,0,264:5,3,9,4 +chrX 3524767 . C CCATCACCACCACCAT 219.97 . AC=1;AF=0.333;AN=3;AS_AltDP=6;AS_QD=32.38;BaseQRankSum=-0.431;DP=70;ExcessHet=0.0000;FS=9.700;MQ=53.50;MQRankSum=0;QD=32.38;ReadPosRankSum=0.045;SOR=2.209;VarDP=8 GT:AD:DP:GQ:MIN_DP:PL:SB 1:2,6:8:99:.:259,0:0,2,5,1 0/0:.:47:41:31:0,41,792 +chrX 3525133 . C T 1678 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=21.90;BaseQRankSum=0.528;DP=79;ExcessHet=0.0000;FS=0.942;MQ=60.00;MQRankSum=0;QD=21.90;ReadPosRankSum=0.758;SOR=0.854;VarDP=78 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:1077,0:0,0,20,12 0/1:23,23:46:99:631,0,592:13,10,13,10 +chrX 3525196 . A ATTTT 1831.97 . AC=2;AF=0.667;AN=3;AS_AltDP=48;AS_QD=30.18;BaseQRankSum=1.265;DP=69;ExcessHet=0.0000;FS=6.287;MQ=59.51;MQRankSum=0;QD=30.18;ReadPosRankSum=-0.205;SOR=0.217;VarDP=62 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,26:27:99:.:.:1038,0:.:1,0,15,11 0|1:13,22:35:99:0|1:3525196_A_ATTTT:833,0,426:3525196:9,4,10,12 +chrX 3525197 . G T 1841 . AC=2;AF=0.667;AN=3;AS_AltDP=48;AS_QD=30.18;BaseQRankSum=1.082;DP=69;ExcessHet=0.0000;FS=6.287;MQ=59.51;MQRankSum=0;QD=30.18;ReadPosRankSum=0.656;SOR=0.217;VarDP=62 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,26:27:99:.:.:1038,0:.:1,0,15,11 0|1:13,22:35:99:0|1:3525196_A_ATTTT:833,0,426:3525196:9,4,10,12 +chrX 3527415 . T C 1289 . AC=2;AF=0.667;AN=3;AS_AltDP=46;AS_QD=19.69;BaseQRankSum=-1.441;DP=70;ExcessHet=0.0000;FS=3.670;MQ=60.00;MQRankSum=0;QD=19.69;ReadPosRankSum=0.613;SOR=0.809;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,19:19:99:610,0:0,0,11,8 0/1:21,27:48:99:709,0,566:12,9,9,18 +chrX 3527652 . C G 1608 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=19.50;BaseQRankSum=1.337;DP=86;ExcessHet=0.0000;FS=0.866;MQ=60.00;MQRankSum=0;QD=19.50;ReadPosRankSum=1.414;SOR=0.547;VarDP=84 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:951,0:0,0,17,13 0/1:29,25:54:99:687,0,771:16,13,11,14 +chrX 3527805 . A G 1709 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=20.46;BaseQRankSum=-0.311;DP=92;ExcessHet=0.0000;FS=4.626;MQ=60.00;MQRankSum=0;QD=20.46;ReadPosRankSum=-0.598;SOR=0.319;VarDP=85 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:1012,0:0,0,17,14 0/1:26,28:54:99:727,0,698:17,9,14,14 +chrX 3528673 . T C 1534 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=20.85;BaseQRankSum=0;DP=81;ExcessHet=0.0000;FS=2.086;MQ=60.00;MQRankSum=0;QD=20.85;ReadPosRankSum=0.437;SOR=1.094;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,34:34:99:1099,0:0,0,13,21 0/1:24,17:41:99:465,0,711:12,12,8,9 +chrX 3528803 . C T 1336 . AC=2;AF=0.667;AN=3;AS_AltDP=45;AS_QD=21.34;BaseQRankSum=-1.243;DP=64;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=21.34;ReadPosRankSum=2.25;SOR=0.650;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:759,0:0,0,13,10 0/1:19,22:41:99:607,0,528:10,9,9,13 +chrX 3528881 . G A 1403 . AC=2;AF=0.667;AN=3;AS_AltDP=34;AS_QD=28.10;BaseQRankSum=1.72;DP=52;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=28.10;ReadPosRankSum=-0.661;SOR=0.818;VarDP=51 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,19:19:99:.:.:855,0:.:0,0,7,12 0|1:17,15:32:99:0|1:3528881_G_A:578,0,648:3528881:8,9,8,7 +chrX 3528889 . A G 1466 . AC=2;AF=0.667;AN=3;AS_AltDP=36;AS_QD=28.23;BaseQRankSum=-1.393;DP=54;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=28.23;ReadPosRankSum=-0.362;SOR=0.693;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,19:19:99:.:.:855,0:.:0,0,7,12 0|1:17,17:34:99:0|1:3528881_G_A:641,0,652:3528881:8,9,10,7 +chrX 3529119 . G T 1486 . AC=2;AF=0.667;AN=3;AS_AltDP=49;AS_QD=19.44;BaseQRankSum=2.304;DP=81;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=19.44;ReadPosRankSum=0.865;SOR=0.673;VarDP=78 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:999,0:0,0,17,13 0/1:29,19:48:99:517,0,762:14,15,8,11 +chrX 3529173 . A G 1841 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=19.29;BaseQRankSum=2.529;DP=101;ExcessHet=0.0000;FS=2.727;MQ=60.00;MQRankSum=0;QD=19.29;ReadPosRankSum=1.264;SOR=1.004;VarDP=97 GT:AD:DP:GQ:PL:SB 1:0,34:34:99:1157,0:0,0,21,13 0/1:37,26:63:99:714,0,1017:19,18,14,12 +chrX 3529267 . T A 1682 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=19.91;BaseQRankSum=1.596;DP=90;ExcessHet=0.0000;FS=4.328;MQ=60.00;MQRankSum=0;QD=19.91;ReadPosRankSum=0.114;SOR=0.675;VarDP=86 GT:AD:DP:GQ:PL:SB 1:0,37:37:99:1234,0:0,0,18,19 0/1:31,18:49:99:478,0,889:13,18,12,6 +chrX 3529721 . C T 1425 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=18.90;BaseQRankSum=2.895;DP=78;ExcessHet=0.0000;FS=3.158;MQ=60.00;MQRankSum=0;QD=18.90;ReadPosRankSum=1.683;SOR=1.132;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:973,0:0,0,8,21 0/1:30,18:48:99:482,0,759:15,15,11,7 +chrX 3529881 . C T 1544 . AC=2;AF=0.667;AN=3;AS_AltDP=50;AS_QD=20.71;BaseQRankSum=2.111;DP=79;ExcessHet=0.0000;FS=10.525;MQ=60.00;MQRankSum=0;QD=20.71;ReadPosRankSum=0.962;SOR=0.461;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:973,0:0,0,13,15 0/1:26,22:48:99:601,0,652:18,8,10,12 +chrX 3530339 . G A 1077 . AC=2;AF=0.667;AN=3;AS_AltDP=37;AS_QD=17.85;BaseQRankSum=0.331;DP=62;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=17.85;ReadPosRankSum=0.547;SOR=0.627;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,14:14:99:487,0:0,0,7,7 0/1:25,23:48:99:620,0,695:11,14,10,13 +chrX 3530888 . T C 1527 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=19.22;BaseQRankSum=1.177;DP=86;ExcessHet=0.0000;FS=0.901;MQ=60.00;MQRankSum=0;QD=19.22;ReadPosRankSum=0.058;SOR=0.570;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:937,0:0,0,18,13 0/1:27,23:50:99:620,0,703:17,10,14,9 +chrX 3531488 . A G 1342 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=18.79;BaseQRankSum=-0.343;DP=78;ExcessHet=0.0000;FS=3.341;MQ=60.00;MQRankSum=0;QD=18.79;ReadPosRankSum=-0.571;SOR=0.928;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:804,0:0,0,14,10 0/1:26,23:49:99:568,0,703:12,14,13,10 +chrX 3531532 . G T 440 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=9.22;BaseQRankSum=1.33;DP=81;ExcessHet=0.0000;FS=13.995;MQ=60.00;MQRankSum=0;QD=9.22;ReadPosRankSum=1.41;SOR=1.773;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:99:28:0,586 0/1:33,18:51:99:.:470,0,960:20,13,5,13 +chrX 3532109 . T TA 1489.97 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=18.88;BaseQRankSum=0.177;DP=93;ExcessHet=0.0000;FS=2.163;MQ=60.00;MQRankSum=0;QD=18.88;ReadPosRankSum=-0.433;SOR=0.435;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:867,0:0,0,16,15 0/1:21,29:50:99:662,0,442:14,7,19,10 +chrX 3532526 . T C 1699 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=20.58;BaseQRankSum=0.711;DP=85;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=20.58;ReadPosRankSum=0.953;SOR=0.798;VarDP=84 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:1051,0:0,0,18,14 0/1:27,25:52:99:678,0,743:16,11,17,8 +chrX 3533229 . T C 667 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=15.84;BaseQRankSum=-0.543;DP=79;ExcessHet=0.0000;FS=1.205;MQ=60.00;MQRankSum=0;QD=15.84;ReadPosRankSum=-0.096;SOR=0.844;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:33:99:33:0,561 0/1:17,27:44:99:.:697,0,419:9,8,12,15 +chrX 3534231 . G A 530 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=12.44;BaseQRankSum=2.346;DP=78;ExcessHet=0.0000;FS=6.662;MQ=60.00;MQRankSum=0;QD=12.44;ReadPosRankSum=-0.263;SOR=0.163;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:33:99:33:0,561 0/1:25,20:45:99:.:560,0,674:7,18,10,10 +chrX 3535274 . C T 1000 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=18.73;BaseQRankSum=1.197;DP=92;ExcessHet=0.0000;FS=1.096;MQ=60.00;MQRankSum=0;QD=18.73;ReadPosRankSum=-0.531;SOR=0.446;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:33:99:33:0,561 0/1:19,36:55:99:.:1030,0,426:11,8,18,18 +chrX 3535643 . G T 604 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=13.49;BaseQRankSum=-0.433;DP=83;ExcessHet=0.0000;FS=2.552;MQ=60.00;MQRankSum=0;QD=13.49;ReadPosRankSum=1.98;SOR=1.164;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:33:99:33:0,561 0/1:23,24:47:99:.:634,0,589:13,10,16,8 +chrX 3536215 . TTGTG T,TTG 2120.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=36,15;AS_QD=27.72,30.61;DP=81;ExcessHet=0.0000;FS=3.736;MQ=59.87;MQRankSum=0;QD=41.54;SOR=0.804;VarDP=52 GT:AD:DP:GQ:PL:SB 1:1,19,0:20:99:826,0,856:1,0,9,10 1/2:0,17,15:32:99:1334,467,374,538,0,444:0,0,12,20 +chrX 3536251 . G C 2680 . AC=3;AF=1.00;AN=3;AS_AltDP=64;AS_QD=28.66;DP=67;ExcessHet=0.0000;FS=0.000;MQ=59.84;QD=42.34;SOR=0.892;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:1144,0:0,0,14,14 1/1:0,36:36:99:1566,108,0:0,0,15,21 +chrX 3536813 . TTTTA T 490.97 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=13.59;BaseQRankSum=0.856;DP=83;ExcessHet=0.0000;FS=3.327;MQ=60.00;MQRankSum=0;QD=13.59;ReadPosRankSum=-1.88;SOR=0.281;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,630 0/1:22,17:39:99:.:530,0,873:18,4,12,5 +chrX 3538043 . C CA 598.97 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=12.51;BaseQRankSum=-0.525;DP=96;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=12.51;ReadPosRankSum=-0.569;SOR=0.824;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,630 0/1:20,31:51:99:.:638,0,376:9,11,13,18 +chrX 3538071 . C A 569 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=12.74;BaseQRankSum=-0.11;DP=81;ExcessHet=0.0000;FS=2.488;MQ=60.00;MQRankSum=0;QD=12.74;ReadPosRankSum=-1.227;SOR=0.711;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,630 0/1:25,22:47:99:.:599,0,707:11,14,12,10 +chrX 3538665 . TGATA TGATAGATA,T 2078.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=37,13;AS_QD=30.83,27.33;DP=77;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=42.36;SOR=1.390;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,17,0:17:99:745,0,746:0,0,5,12 1/2:0,20,13:33:99:1373,534,475,839,0,931:0,0,13,20 +chrX 3539019 . C T 656 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=12.25;BaseQRankSum=2.333;DP=89;ExcessHet=0.0000;FS=7.470;MQ=60.00;MQRankSum=0;QD=12.25;ReadPosRankSum=-0.296;SOR=0.760;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,516 0/1:30,26:56:99:.:686,0,750:19,11,11,15 +chrX 3540307 . G A 659 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=14.35;BaseQRankSum=-1.935;DP=78;ExcessHet=0.0000;FS=2.480;MQ=60.00;MQRankSum=0;QD=14.35;ReadPosRankSum=-2.11;SOR=0.388;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,516 0/1:21,27:48:99:.:689,0,566:13,8,14,13 +chrX 3540422 . A G 717 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=12.05;BaseQRankSum=-1.305;DP=94;ExcessHet=0.0000;FS=3.468;MQ=60.00;MQRankSum=0;QD=12.05;ReadPosRankSum=-1.376;SOR=1.174;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,516 0/1:33,29:62:99:.:747,0,931:17,16,18,11 +chrX 3540768 . T C 1294 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=25.96;BaseQRankSum=-1.975;DP=83;ExcessHet=0.0000;FS=2.449;MQ=59.89;MQRankSum=-1.225;QD=25.96;ReadPosRankSum=0.36;SOR=0.864;VarDP=51 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:30:99:30:.:.:0,516 0|1:17,34:51:99:.:0|1:3540768_T_C:1324,0,601:3540768:8,9,19,15 +chrX 3540776 . G A 1210 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=25.83;BaseQRankSum=-1.66;DP=78;ExcessHet=0.0000;FS=4.231;MQ=59.88;MQRankSum=-1.285;QD=25.83;ReadPosRankSum=0.607;SOR=1.156;VarDP=48 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:30:99:30:.:.:0,516 0|1:17,31:48:99:.:0|1:3540768_T_C:1240,0,610:3540768:8,9,19,12 +chrX 3541180 . C T 521 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=12.81;BaseQRankSum=-1.273;DP=76;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=12.81;ReadPosRankSum=0.097;SOR=0.784;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,516 0/1:22,21:43:99:.:551,0,614:11,11,10,11 +chrX 3541293 . T C 663 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=13.33;BaseQRankSum=0.778;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.33;ReadPosRankSum=0.669;SOR=0.582;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,516 0/1:27,25:52:99:.:693,0,742:10,17,10,15 +chrX 3541432 . C G 1175 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=30.90;BaseQRankSum=2.063;DP=92;ExcessHet=0.0000;FS=3.869;MQ=60.00;MQRankSum=0;QD=30.90;ReadPosRankSum=0.044;SOR=0.916;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,38:39:99:.:1205,0:0,1,23,15 0/0:.:52:96:52:0,96,1234 +chrX 3541760 . C T 950 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=20.00;BaseQRankSum=0.715;DP=82;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=20.00;ReadPosRankSum=-1.606;SOR=0.673;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,515 0/1:15,34:49:99:.:980,0,344:9,6,20,14 +chrX 3542048 . C G 752 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=12.61;BaseQRankSum=-0.514;DP=98;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=12.61;ReadPosRankSum=-1.235;SOR=0.701;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,515 0/1:33,29:62:99:.:782,0,916:17,16,15,14 +chrX 3542203 . C T 713 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=14.86;BaseQRankSum=1.156;DP=81;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.86;ReadPosRankSum=0.282;SOR=0.846;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,515 0/1:24,26:50:99:.:743,0,639:12,12,12,14 +chrX 3542604 . T A 1623 . AC=2;AF=0.667;AN=3;AS_AltDP=50;AS_QD=33.06;DP=80;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.06;SOR=1.270;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,515 1/1:0,50:50:99:.:1653,150,0:0,0,31,19 +chrX 3543001 . C T 569 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=10.89;BaseQRankSum=2.836;DP=87;ExcessHet=0.0000;FS=2.346;MQ=59.49;MQRankSum=0.306;QD=10.89;ReadPosRankSum=-0.284;SOR=1.048;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,515 0/1:33,22:55:99:.:599,0,859:17,16,9,13 +chrX 3543198 . T C 2199 . AC=2;AF=0.667;AN=3;AS_AltDP=50;AS_QD=30.53;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.58;SOR=0.773;VarDP=50 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:30:99:30:.:.:0,515 1|1:0,50:50:99:.:0|1:3543198_T_C:2229,150,0:3543198:0,0,24,26 +chrX 3543200 . A G 2199 . AC=2;AF=0.667;AN=3;AS_AltDP=50;AS_QD=30.60;DP=80;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.58;SOR=0.773;VarDP=50 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:30:99:30:.:.:0,515 1|1:0,50:50:99:.:0|1:3543198_T_C:2229,150,0:3543198:0,0,24,26 +chrX 3543378 . T TA,TAA 1186.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=29,16;AS_QD=32.69,32.55;DP=85;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=27.24;SOR=0.737;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,515,515 1/2:0,29,16:45:99:.:1226,412,278,681,0,625:0,0,22,23 +chrX 3543802 . GTC G 286.97 . AC=1;AF=0.333;AN=3;AS_AltDP=10;AS_QD=32.60;DP=73;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.60;SOR=1.609;VarDP=10 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,10:10:99:.:326,0:0,0,3,7 0/0:.:55:69:55:0,69,1035 +chrX 3543824 . CTCTCTATA C,CTA 289.97 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=0,12;AS_QD=0.00,12.65;BaseQRankSum=1.244;DP=71;ExcessHet=0.0000;FS=1.471;MQ=59.24;MQRankSum=0;QD=12.65;ReadPosRankSum=2.188;SOR=1.022;VarDP=26 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:27:99:27:0,397,397 0/2:14,0,12:26:99:.:329,400,1230,0,574,508:7,7,5,7 +chrX 3543828 . CTATA *,C,CTA 706.97 . AC=1,0,1;AF=0.333,0.00,0.333;AN=3;AS_AltDP=12,0,7;AS_QD=0.00,0.00,27.38;BaseQRankSum=1.534;DP=69;ExcessHet=0.0000;FS=0.000;MQ=59.20;MQRankSum=0;QD=37.30;ReadPosRankSum=-0.174;SOR=0.368;VarDP=20 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:27:99:27:0,397,397,397 1/3:1,12,0,7:20:99:.:746,218,466,797,267,1208,391,0,763,731:0,1,8,11 +chrX 3543892 . C T 800 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=14.82;BaseQRankSum=1.661;DP=83;ExcessHet=0.0000;FS=7.142;MQ=60.00;MQRankSum=0;QD=14.82;ReadPosRankSum=-1.05;SOR=0.614;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:27:99:27:0,397 0/1:27,29:56:99:.:830,0,695:10,17,16,13 +chrX 3543970 . T C 2033 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=32.75;DP=92;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.75;SOR=1.010;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:27:99:27:0,397 1/1:0,63:63:99:.:2063,188,0:0,0,36,27 +chrX 3544003 . G A 2242 . AC=2;AF=0.667;AN=3;AS_AltDP=70;AS_QD=32.00;BaseQRankSum=2.109;DP=101;ExcessHet=0.0000;FS=0.000;MQ=59.77;MQRankSum=0;QD=32.00;ReadPosRankSum=0;SOR=0.330;VarDP=71 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:27:99:27:0,397 1/1:1,70:71:99:.:2272,188,0:1,0,39,31 +chrX 3544073 . G T 1855 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=30.40;BaseQRankSum=1.256;DP=90;ExcessHet=0.0000;FS=0.000;MQ=59.91;MQRankSum=-0.091;QD=30.40;ReadPosRankSum=-0.299;SOR=1.071;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:27:99:27:0,397 1/1:2,60:62:99:.:1885,141,0:1,1,35,25 +chrX 3544332 . G A 752 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=11.67;BaseQRankSum=-0.969;DP=95;ExcessHet=0.0000;FS=15.658;MQ=60.00;MQRankSum=0;QD=11.67;ReadPosRankSum=2.384;SOR=1.395;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:27:99:27:0,397 0/1:37,30:67:99:.:782,0,1030:14,23,20,10 +chrX 3545148 . C G 1821 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=32.47;DP=84;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.47;SOR=1.342;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:27:99:27:0,397 1/1:0,57:57:99:.:1851,170,0:0,0,36,21 +chrX 3545200 . C T 1941 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=33.41;DP=87;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.41;SOR=1.034;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:27:99:27:0,397 1/1:0,59:59:99:.:1971,177,0:0,0,34,25 +chrX 3545490 . G A 2080 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=33.49;DP=92;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.49;SOR=1.685;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:27:99:27:0,397 1/1:0,63:63:99:.:2110,189,0:0,0,43,20 +chrX 3546033 . G A 2123 . AC=2;AF=0.667;AN=3;AS_AltDP=66;AS_QD=32.62;DP=94;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.62;SOR=0.754;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:27:99:27:0,397 1/1:0,66:66:99:.:2153,198,0:0,0,32,34 +chrX 3546319 . A G 1817 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=31.31;DP=91;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.31;SOR=0.950;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:27:99:27:0,397 1/1:0,59:59:99:.:1847,176,0:0,0,26,33 +chrX 3546824 . A G 1269 . AC=2;AF=0.667;AN=3;AS_AltDP=39;AS_QD=33.31;DP=68;ExcessHet=0.0000;FS=0.000;MQ=58.88;QD=33.31;SOR=1.552;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:27:99:27:0,397 1/1:0,39:39:99:.:1299,117,0:0,0,26,13 +chrX 3546863 . G GGGAA 210.97 . AC=1;AF=0.333;AN=3;AS_AltDP=10;AS_QD=19.23;BaseQRankSum=0.577;DP=63;ExcessHet=0.0000;FS=6.929;MQ=58.28;MQRankSum=2.832;QD=19.23;ReadPosRankSum=-0.595;SOR=2.245;VarDP=13 GT:AD:DP:GQ:MIN_DP:PL:SB 1:3,10:13:99:.:250,0:1,2,8,2 0/0:.:38:75:38:0,75,1125 +chrX 3546894 . AAGGAAGGAAGGAAAAGAGGGAGGCAGGGAGGGAGGGAAGGAAGGAAGGAAGGAAGGT A 43.97 . AC=1;AF=0.333;AN=3;AS_AltDP=6;AS_QD=2.02;BaseQRankSum=0.159;DP=92;ExcessHet=0.0000;FS=1.987;MQ=57.39;MQRankSum=-1.401;QD=2.02;ReadPosRankSum=1.156;SOR=1.347;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,372 0/1:35,6:41:83:.:83,0,1340:15,8,5,1 +chrX 3546902 . A *,AAGGAAGGT,AAGGT,AAAAGAGGGAGGCAGGGAGGGAGGGAAGGAAGGAAGGAAGGAAGGT,AAGGAAAAGAGGGAGGCAGGGAGGGAGGGAAGGAAGGAAGGAAGGAAGGT 1105.97 . AC=1,1,0,0,0;AF=0.333,0.333,0.00,0.00,0.00;AN=3;AS_AltDP=21,2,0,0,0;AS_QD=0.00,26.06,27.73,28.87,28.05;BaseQRankSum=0.431;DP=80;ExcessHet=0.0000;FS=3.388;MQ=56.72;MQRankSum=1.205;QD=47.71;ReadPosRankSum=-0.434;SOR=0.626;VarDP=24 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,372,372,372,372,372 1/2:1,21,2,0,0,0:24:99:.:1145,456,633,672,0,825,825,300,856,1207,796,300,696,1042,1205,804,301,735,1081,1215,1254:0,1,13,10 +chrX 3547908 . A T 819 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=15.16;BaseQRankSum=0.429;DP=89;ExcessHet=0.0000;FS=3.754;MQ=60.00;MQRankSum=0;QD=15.16;ReadPosRankSum=-0.643;SOR=0.330;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,372 0/1:25,31:56:99:.:849,0,641:16,9,16,15 +chrX 3548012 . A G 855 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=13.21;BaseQRankSum=-1.407;DP=99;ExcessHet=0.0000;FS=2.038;MQ=59.57;MQRankSum=0.772;QD=13.21;ReadPosRankSum=-0.151;SOR=0.481;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,372 0/1:31,36:67:99:.:885,0,818:20,11,21,15 +chrX 3548192 . C T 561 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=10.75;BaseQRankSum=2.904;DP=90;ExcessHet=0.0000;FS=2.369;MQ=60.00;MQRankSum=0;QD=10.75;ReadPosRankSum=-0.103;SOR=0.397;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,372 0/1:33,22:55:99:.:591,0,807:12,21,10,12 +chrX 3548484 . T C 962 . AC=1;AF=0.333;AN=3;AS_AltDP=40;AS_QD=13.59;BaseQRankSum=-2.644;DP=109;ExcessHet=0.0000;FS=3.169;MQ=60.00;MQRankSum=0;QD=13.59;ReadPosRankSum=0.17;SOR=0.572;VarDP=73 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,372 0/1:33,40:73:99:.:992,0,868:14,19,21,19 +chrX 3549222 . A G 1729 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=31.41;BaseQRankSum=-0.419;DP=89;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=31.41;ReadPosRankSum=-0.402;SOR=0.304;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,372 1/1:1,55:56:99:.:1759,133,0:1,0,30,25 +chrX 3549355 . T TTCTCTCTC,TTCTCTCTCTC 2104.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=21,19;AS_QD=29.32,32.70;BaseQRankSum=-0.825;DP=97;ExcessHet=0.0000;FS=0.000;MQ=59.95;MQRankSum=0;QD=52.29;ReadPosRankSum=-1.396;SOR=0.507;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,372,372 1/2:1,21,19:41:99:.:2144,510,398,587,0,476:0,1,15,25 +chrX 3549581 . G T 533 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=15.22;BaseQRankSum=1.167;DP=70;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=15.22;ReadPosRankSum=0.122;SOR=0.744;VarDP=37 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,372 0/1:17,20:37:99:.:563,0,425:10,7,12,8 +chrX 3550114 . G A 2188 . AC=2;AF=0.667;AN=3;AS_AltDP=69;AS_QD=32.14;DP=102;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.14;SOR=0.781;VarDP=69 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,372 1/1:0,69:69:99:.:2218,207,0:0,0,33,36 +chrX 3550835 . G A 550 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=11.60;BaseQRankSum=2.004;DP=84;ExcessHet=0.0000;FS=8.292;MQ=60.00;MQRankSum=0;QD=11.60;ReadPosRankSum=1.131;SOR=1.809;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,372 0/1:29,21:50:99:.:580,0,806:15,14,6,15 +chrX 3550996 . G A 388 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=10.20;BaseQRankSum=-0.846;DP=75;ExcessHet=0.0000;FS=6.637;MQ=60.00;MQRankSum=0;QD=10.20;ReadPosRankSum=-0.569;SOR=1.739;VarDP=41 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:32:99:32:.:.:0,372 0|1:24,17:41:99:.:0|1:3550996_G_A:418,0,656:3550996:12,12,12,5 +chrX 3551002 . A G 1434 . AC=2;AF=0.667;AN=3;AS_AltDP=39;AS_QD=30.44;DP=72;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=37.54;SOR=0.968;VarDP=39 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:32:99:32:.:.:0,372 1|1:0,39:39:99:.:0|1:3550996_G_A:1464,117,0:3550996:0,0,22,17 +chrX 3551669 . G A 1364 . AC=2;AF=0.667;AN=3;AS_AltDP=41;AS_QD=34.00;DP=76;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=34.00;SOR=1.666;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,372 1/1:0,41:41:99:.:1394,123,0:0,0,28,13 +chrX 3553630 . A G 1548 . AC=2;AF=0.667;AN=3;AS_AltDP=48;AS_QD=32.88;DP=80;ExcessHet=0.0000;FS=0.000;MQ=55.54;QD=32.88;SOR=0.693;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,372 1/1:0,48:48:99:.:1578,144,0:0,0,24,24 +chrX 3553720 . A G 2312 . AC=3;AF=1.00;AN=3;AS_AltDP=71;AS_QD=32.99;DP=72;ExcessHet=0.0000;FS=0.000;MQ=53.52;QD=32.99;SOR=1.042;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,20:20:99:645,0:0,0,11,9 1/1:0,51:51:99:1697,153,0:0,0,19,32 +chrX 3554235 . G A 730 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=12.46;BaseQRankSum=0.527;DP=90;ExcessHet=0.0000;FS=0.975;MQ=59.85;MQRankSum=-0.984;QD=12.46;ReadPosRankSum=-0.931;SOR=0.529;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:27:99:27:0,576 0/1:31,30:61:99:.:760,0,800:13,18,14,16 +chrX 3554857 . C T 398 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=16.46;BaseQRankSum=0.146;DP=82;ExcessHet=0.0000;FS=4.205;MQ=34.95;MQRankSum=3.879;QD=16.46;ReadPosRankSum=0.305;SOR=0.208;VarDP=26 GT:AD:DP:GQ:MIN_DP:PL:SB 1:6,20:26:99:.:428,0:5,1,12,8 0/0:.:56:87:56:0,87,1359 +chrX 3554877 . G A 415 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=7.67;BaseQRankSum=2.324;DP=86;ExcessHet=0.0000;FS=0.000;MQ=36.66;MQRankSum=1.551;QD=7.67;ReadPosRankSum=1.101;SOR=0.610;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:27:99:27:0,495 0/1:40,18:58:99:.:445,0,1070:23,17,10,8 +chrX 3555216 . T C 539 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=11.38;BaseQRankSum=-0.118;DP=78;ExcessHet=0.0000;FS=2.602;MQ=54.17;MQRankSum=-6.421;QD=11.38;ReadPosRankSum=1.29;SOR=1.112;VarDP=50 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:27:99:27:.:.:0,495 0|1:34,16:50:99:.:0|1:3555216_T_C:569,0,1348:3555216:14,20,5,11 +chrX 3555223 . G C 543 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=11.69;BaseQRankSum=1.356;DP=77;ExcessHet=0.0000;FS=2.666;MQ=53.58;MQRankSum=-6.346;QD=11.69;ReadPosRankSum=0.678;SOR=1.179;VarDP=49 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:27:99:27:.:.:0,495 0|1:33,16:49:99:.:0|1:3555216_T_C:573,0,1317:3555216:14,19,5,11 +chrX 3555283 . G C 1818 . AC=2;AF=0.667;AN=3;AS_AltDP=43;AS_QD=28.86;DP=70;ExcessHet=0.0000;FS=0.000;MQ=47.19;QD=42.98;SOR=1.312;VarDP=43 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:27:99:27:.:.:0,495 1|1:0,43:43:99:.:0|1:3555283_G_C:1848,129,0:3555283:0,0,16,27 +chrX 3555288 . C T 1784 . AC=2;AF=0.667;AN=3;AS_AltDP=41;AS_QD=29.22;DP=69;ExcessHet=0.0000;FS=0.000;MQ=46.33;QD=44.24;SOR=1.501;VarDP=41 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:27:99:27:.:.:0,495 1|1:0,41:41:99:.:0|1:3555283_G_C:1814,123,0:3555283:0,0,14,27 +chrX 3555321 . G A 1365 . AC=2;AF=0.667;AN=3;AS_AltDP=42;AS_QD=33.21;DP=69;ExcessHet=0.0000;FS=0.000;MQ=43.49;QD=33.21;SOR=1.259;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:27:99:27:0,495 1/1:0,42:42:99:.:1395,126,0:0,0,16,26 +chrX 3555472 . C T 577 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=23.35;BaseQRankSum=-0.456;DP=55;ExcessHet=0.0000;FS=0.000;MQ=45.46;MQRankSum=3.666;QD=23.35;ReadPosRankSum=2.955;SOR=0.418;VarDP=26 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:27:99:27:0,495 0/1:6,20:26:99:.:607,0,112:2,4,9,11 +chrX 3555488 . C T 282 . AC=1;AF=0.333;AN=3;AS_AltDP=9;AS_QD=10.06;BaseQRankSum=1.909;DP=58;ExcessHet=0.0000;FS=0.000;MQ=45.56;MQRankSum=-3.545;QD=10.06;ReadPosRankSum=-2.374;SOR=0.892;VarDP=31 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:27:99:27:.:.:0,495 0|1:22,9:31:99:.:0|1:3555488_C_T:312,0,840:3555488:11,11,5,4 +chrX 3555490 . T A 282 . AC=1;AF=0.333;AN=3;AS_AltDP=9;AS_QD=10.06;BaseQRankSum=1.382;DP=58;ExcessHet=0.0000;FS=0.000;MQ=45.56;MQRankSum=-3.545;QD=10.06;ReadPosRankSum=-2.156;SOR=0.892;VarDP=31 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:27:99:27:.:.:0,495 0|1:22,9:31:99:.:0|1:3555488_C_T:312,0,840:3555488:11,11,5,4 +chrX 3555599 . T C 604 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=14.41;BaseQRankSum=0.472;DP=74;ExcessHet=0.0000;FS=4.455;MQ=45.38;MQRankSum=4.509;QD=14.41;ReadPosRankSum=2.229;SOR=0.260;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:27:99:27:0,495 0/1:20,24:44:99:.:634,0,460:14,6,13,11 +chrX 3555642 . T A 399 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=10.21;BaseQRankSum=1.361;DP=69;ExcessHet=0.0000;FS=13.819;MQ=49.03;MQRankSum=-5.455;QD=10.21;ReadPosRankSum=0.598;SOR=2.905;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:27:99:27:0,495 0/1:24,18:42:99:.:429,0,560:14,10,16,2 +chrX 3555973 . G C 1618 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=19.39;BaseQRankSum=0.519;DP=89;ExcessHet=0.0000;FS=0.874;MQ=55.82;MQRankSum=-3.035;QD=19.39;ReadPosRankSum=-2.237;SOR=0.540;VarDP=85 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:794,0:0,0,9,15 0/1:28,33:61:99:854,0,701:16,12,21,12 +chrX 3556051 . G C 796 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=12.91;BaseQRankSum=2.491;DP=95;ExcessHet=0.0000;FS=0.956;MQ=52.40;MQRankSum=-6.63;QD=12.91;ReadPosRankSum=1.311;SOR=0.735;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:99:28:0,622 0/1:34,30:64:99:.:826,0,885:16,18,16,14 +chrX 3556056 . A G 2516 . AC=2;AF=0.667;AN=3;AS_AltDP=67;AS_QD=32.55;DP=95;ExcessHet=0.0000;FS=0.000;MQ=52.66;QD=38.00;SOR=0.723;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:99:28:0,622 1/1:0,67:67:99:.:2546,201,0:0,0,34,33 +chrX 3556064 . A G 882 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=13.61;BaseQRankSum=2.661;DP=96;ExcessHet=0.0000;FS=4.790;MQ=52.77;MQRankSum=-7.089;QD=13.61;ReadPosRankSum=-0.239;SOR=0.782;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:99:28:0,622 0/1:35,32:67:99:.:912,0,890:15,20,18,14 +chrX 3556168 . T A 2198 . AC=2;AF=0.667;AN=3;AS_AltDP=69;AS_QD=31.83;BaseQRankSum=-0.392;DP=99;ExcessHet=0.0000;FS=0.000;MQ=56.82;MQRankSum=2.192;QD=31.83;ReadPosRankSum=-1.658;SOR=0.348;VarDP=70 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:99:28:0,622 1/1:1,69:70:99:.:2228,175,0:0,1,30,39 +chrX 3556181 . G T 700 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=10.90;BaseQRankSum=-0.703;DP=97;ExcessHet=0.0000;FS=0.000;MQ=57.30;MQRankSum=-4.295;QD=10.90;ReadPosRankSum=-0.132;SOR=0.607;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:99:28:0,622 0/1:37,30:67:99:.:730,0,984:14,23,12,18 +chrX 3556272 . T C 856 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=14.77;BaseQRankSum=-0.172;DP=90;ExcessHet=0.0000;FS=2.157;MQ=59.09;MQRankSum=-2.704;QD=14.77;ReadPosRankSum=-1.583;SOR=0.444;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:99:28:0,622 0/1:27,33:60:99:.:886,0,698:11,16,16,17 +chrX 3556469 . C T 630 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=12.45;BaseQRankSum=-0.284;DP=83;ExcessHet=0.0000;FS=2.316;MQ=50.25;MQRankSum=3.748;QD=12.45;ReadPosRankSum=-0.57;SOR=0.689;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:99:28:0,622 0/1:27,26:53:99:.:660,0,680:15,12,12,14 +chrX 3556489 . G A 632 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=12.49;BaseQRankSum=1.379;DP=84;ExcessHet=0.0000;FS=1.047;MQ=46.50;MQRankSum=-4.356;QD=12.49;ReadPosRankSum=2.077;SOR=0.655;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:99:28:0,622 0/1:28,25:53:99:.:662,0,729:15,13,12,13 +chrX 3556619 . T C 1940 . AC=2;AF=0.667;AN=3;AS_AltDP=64;AS_QD=30.78;DP=92;ExcessHet=0.0000;FS=0.000;MQ=38.90;QD=30.78;SOR=0.966;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:99:28:0,622 1/1:0,64:64:99:.:1970,192,0:0,0,28,36 +chrX 3556815 . C T 2177 . AC=3;AF=1.00;AN=3;AS_AltDP=70;AS_QD=31.53;DP=74;ExcessHet=0.0000;FS=0.000;MQ=59.37;QD=31.53;SOR=1.163;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,21:21:99:629,0:0,0,10,11 1/1:0,49:49:99:1578,146,0:0,0,18,31 +chrX 3557085 . T C 610 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=16.00;BaseQRankSum=0.571;DP=70;ExcessHet=0.0000;FS=2.911;MQ=53.98;MQRankSum=-0.357;QD=16.00;ReadPosRankSum=-0.068;SOR=0.296;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,266 0/1:17,23:40:99:.:640,0,416:5,12,10,13 +chrX 3557823 . A C 353 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=9.58;BaseQRankSum=1.867;DP=71;ExcessHet=0.0000;FS=4.837;MQ=42.06;MQRankSum=-1.382;QD=9.58;ReadPosRankSum=-0.363;SOR=0.922;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,266 0/1:25,15:40:99:.:383,0,644:15,10,6,9 +chrX 3557887 . G A 466 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=11.02;BaseQRankSum=1.125;DP=75;ExcessHet=0.0000;FS=2.597;MQ=45.71;MQRankSum=-3.114;QD=11.02;ReadPosRankSum=1.115;SOR=0.928;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,266 0/1:26,19:45:99:.:496,0,684:14,12,8,11 +chrX 3558033 . G A 756 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=17.09;BaseQRankSum=1.236;DP=79;ExcessHet=0.0000;FS=9.764;MQ=49.87;MQRankSum=-0.191;QD=17.09;ReadPosRankSum=-2.645;SOR=0.105;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,266 0/1:19,27:46:99:.:786,0,512:16,3,16,11 +chrX 3558402 . G T 641 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=16.78;BaseQRankSum=-1.376;DP=72;ExcessHet=0.0000;FS=0.000;MQ=38.00;MQRankSum=4.468;QD=16.78;ReadPosRankSum=-1.076;SOR=0.527;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,266 0/1:15,25:40:99:.:671,0,555:4,11,8,17 +chrX 3558409 . C T 360 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=9.51;BaseQRankSum=0.272;DP=71;ExcessHet=0.0000;FS=1.342;MQ=38.20;MQRankSum=-4.397;QD=9.51;ReadPosRankSum=0.497;SOR=0.990;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,266 0/1:25,16:41:99:.:390,0,981:8,17,4,12 +chrX 3558444 . A G 594 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=16.86;BaseQRankSum=1.674;DP=67;ExcessHet=0.0000;FS=1.271;MQ=38.45;MQRankSum=-3.295;QD=16.86;ReadPosRankSum=-1.098;SOR=0.465;VarDP=37 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:30:99:30:.:.:0,266 0|1:20,17:37:99:.:0|1:3558444_A_G:624,0,757:3558444:8,12,8,9 +chrX 3558461 . G A 546 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=17.45;BaseQRankSum=2.157;DP=63;ExcessHet=0.0000;FS=0.000;MQ=39.57;MQRankSum=-3.016;QD=17.45;ReadPosRankSum=-0.832;SOR=0.818;VarDP=33 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:30:99:30:.:.:0,266 0|1:18,15:33:99:.:0|1:3558444_A_G:576,0,699:3558444:9,9,8,7 +chrX 3558616 . T C 362 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=11.88;BaseQRankSum=-1.923;DP=64;ExcessHet=0.0000;FS=1.363;MQ=52.68;MQRankSum=-0.974;QD=11.88;ReadPosRankSum=0.47;SOR=0.465;VarDP=33 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,266 0/1:18,15:33:99:.:392,0,527:12,6,9,6 +chrX 3559421 . G A 883 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=12.01;BaseQRankSum=-0.305;DP=108;ExcessHet=0.0000;FS=4.461;MQ=59.52;MQRankSum=0.449;QD=12.01;ReadPosRankSum=1.223;SOR=1.244;VarDP=76 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,266 0/1:42,34:76:99:.:913,0,1191:21,21,21,13 +chrX 3559582 . T C 605 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=13.23;BaseQRankSum=1.145;DP=80;ExcessHet=0.0000;FS=0.000;MQ=54.82;MQRankSum=-4.478;QD=13.23;ReadPosRankSum=0.66;SOR=0.693;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,266 0/1:24,24:48:99:.:635,0,640:14,10,14,10 +chrX 3559808 . C A 838 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=14.97;BaseQRankSum=1.665;DP=89;ExcessHet=0.0000;FS=7.495;MQ=53.89;MQRankSum=-4.169;QD=14.97;ReadPosRankSum=0.25;SOR=1.724;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,266 0/1:27,31:58:99:.:868,0,679:13,14,9,22 +chrX 3559845 . A G 645 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=11.84;BaseQRankSum=1.007;DP=92;ExcessHet=0.0000;FS=7.467;MQ=52.19;MQRankSum=-5.224;QD=11.84;ReadPosRankSum=-0.104;SOR=1.675;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,266 0/1:31,26:57:99:.:675,0,836:14,17,7,19 +chrX 3559856 . T C 457 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=9.94;BaseQRankSum=-0.303;DP=82;ExcessHet=0.0000;FS=2.600;MQ=51.14;MQRankSum=-5.28;QD=9.94;ReadPosRankSum=-0.662;SOR=1.222;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,266 0/1:29,20:49:99:.:487,0,811:12,17,6,14 +chrX 3559885 . G A 329 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=9.21;BaseQRankSum=1.321;DP=70;ExcessHet=0.0000;FS=3.048;MQ=48.71;MQRankSum=-4.648;QD=9.21;ReadPosRankSum=-0.264;SOR=1.410;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,266 0/1:25,14:39:99:.:359,0,680:11,14,4,10 +chrX 3560022 . A C 377 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=9.25;BaseQRankSum=1.977;DP=76;ExcessHet=0.0000;FS=4.442;MQ=39.10;MQRankSum=0.121;QD=9.25;ReadPosRankSum=0.281;SOR=1.174;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,266 0/1:28,16:44:99:.:407,0,736:13,15,10,6 +chrX 3560366 . C A 499 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=10.58;BaseQRankSum=0.331;DP=84;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=10.58;ReadPosRankSum=1.18;SOR=0.727;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,266 0/1:29,21:50:99:.:529,0,818:15,14,10,11 +chrX 3560909 . C G 557 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=12.23;BaseQRankSum=2.028;DP=80;ExcessHet=0.0000;FS=1.143;MQ=60.00;MQRankSum=0;QD=12.23;ReadPosRankSum=0.578;SOR=0.445;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,266 0/1:25,23:48:99:.:587,0,605:16,9,13,10 +chrX 3561324 . T C 612 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=16.46;BaseQRankSum=-2.311;DP=70;ExcessHet=0.0000;FS=1.309;MQ=60.00;MQRankSum=0;QD=16.46;ReadPosRankSum=-1.787;SOR=0.446;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,266 0/1:14,25:39:99:.:642,0,370:9,5,14,11 +chrX 3561507 . TTTTATTTA T 490.97 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=21.20;BaseQRankSum=2.089;DP=75;ExcessHet=0.0000;FS=1.580;MQ=60.00;MQRankSum=0;QD=21.20;ReadPosRankSum=-0.822;SOR=0.870;VarDP=25 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,266 0/1:11,14:25:99:.:530,0,409:6,5,6,8 +chrX 3562680 . T C 492 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=9.00;BaseQRankSum=-1.554;DP=89;ExcessHet=0.0000;FS=2.427;MQ=60.00;MQRankSum=0;QD=9.00;ReadPosRankSum=0.289;SOR=1.101;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,266 0/1:36,22:58:99:.:522,0,1043:13,23,6,16 +chrX 3563457 . C G 755 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=19.15;BaseQRankSum=-1.392;DP=73;ExcessHet=0.0000;FS=8.917;MQ=60.00;MQRankSum=0;QD=19.15;ReadPosRankSum=-2.061;SOR=0.088;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,266 0/1:11,30:41:99:.:785,0,251:10,1,19,11 +chrX 3564639 . T G 675 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=10.68;BaseQRankSum=0.095;DP=98;ExcessHet=0.0000;FS=0.929;MQ=60.00;MQRankSum=0;QD=10.68;ReadPosRankSum=1.829;SOR=0.846;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,266 0/1:37,29:66:99:.:705,0,953:19,18,16,13 +chrX 3565126 . A C 957 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=18.62;BaseQRankSum=-1.968;DP=83;ExcessHet=0.0000;FS=2.323;MQ=60.00;MQRankSum=0;QD=18.62;ReadPosRankSum=0.834;SOR=1.101;VarDP=53 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:30:99:30:.:.:0,266 0|1:26,27:53:99:.:0|1:3565126_A_C:987,0,891:3565126:13,13,11,16 +chrX 3565138 . TA T 1756.97 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=21.64;BaseQRankSum=-0.703;DP=86;ExcessHet=0.0000;FS=6.239;MQ=60.00;MQRankSum=0;QD=21.64;ReadPosRankSum=-0.774;SOR=0.601;VarDP=83 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,27:27:99:.:.:748,0:.:0,0,12,15 0|1:26,30:56:99:0|1:3565126_A_C:1048,0,852:3565126:16,10,14,16 +chrX 3565494 . TAC T 1062.97 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=34.36;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.08;SOR=1.609;VarDP=25 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,25:25:99:.:1102,0:0,0,17,8 0/0:.:58:99:58:0,101,1414 +chrX 3565639 . T C 1303 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=14.65;BaseQRankSum=-1.195;DP=96;ExcessHet=0.0000;FS=0.000;MQ=59.81;MQRankSum=0;QD=14.65;ReadPosRankSum=1.83;SOR=0.714;VarDP=91 GT:AD:DP:GQ:PL:SB 1:0,21:21:99:680,0:0,0,13,8 0/1:44,26:70:99:653,0,1239:26,18,15,11 +chrX 3565745 . C T 1397 . AC=2;AF=0.667;AN=3;AS_AltDP=48;AS_QD=16.99;BaseQRankSum=-0.113;DP=87;ExcessHet=0.0000;FS=0.816;MQ=59.94;MQRankSum=0;QD=16.99;ReadPosRankSum=0.654;SOR=0.593;VarDP=84 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:908,0:0,0,15,12 0/1:36,21:57:99:519,0,989:17,19,9,12 +chrX 3566101 . A G 2014 . AC=2;AF=0.667;AN=3;AS_AltDP=69;AS_QD=22.97;BaseQRankSum=-1.629;DP=93;ExcessHet=0.0000;FS=0.947;MQ=60.00;MQRankSum=0;QD=22.97;ReadPosRankSum=-0.654;SOR=0.844;VarDP=89 GT:AD:DP:GQ:PL:SB 1:0,35:35:99:1125,0:0,0,13,22 0/1:20,34:54:99:919,0,513:10,10,19,15 +chrX 3566767 . A C 3050 . AC=3;AF=1.00;AN=3;AS_AltDP=95;AS_QD=32.42;DP=100;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.42;SOR=0.848;VarDP=95 GT:AD:DP:GQ:PL:SB 1:0,21:21:99:654,0:0,0,11,10 1/1:0,74:74:99:2426,222,0:0,0,40,34 +chrX 3567070 . C CT 217.97 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=5.71;BaseQRankSum=-0.086;DP=86;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=5.71;ReadPosRankSum=2.156;SOR=0.818;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:99:28:0,655 0/1:30,15:45:99:.:257,0,649:15,15,8,7 +chrX 3567098 . A C 1380 . AC=2;AF=0.667;AN=3;AS_AltDP=48;AS_QD=18.08;BaseQRankSum=-0.144;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=18.08;ReadPosRankSum=-1.312;SOR=0.729;VarDP=78 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:878,0:0,0,10,17 0/1:30,21:51:99:532,0,850:14,16,12,9 +chrX 3567544 . C G 990 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=29.14;BaseQRankSum=2.579;DP=95;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=29.14;ReadPosRankSum=-0.782;SOR=1.542;VarDP=35 GT:AD:DP:GQ:MIN_DP:PL:SB 1:2,33:35:99:.:1020,0:1,1,11,22 0/0:.:59:99:59:0,99,1270 +chrX 3568248 . G A 1745 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=18.68;BaseQRankSum=-0.366;DP=97;ExcessHet=0.0000;FS=5.611;MQ=60.00;MQRankSum=0;QD=18.68;ReadPosRankSum=0.389;SOR=1.330;VarDP=95 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:963,0:0,0,19,9 0/1:34,33:67:99:812,0,836:18,16,21,12 +chrX 3568813 . CT C 753.97 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=30.50;DP=80;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.50;SOR=1.697;VarDP=26 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,26:26:99:.:793,0:0,0,18,8 0/0:.:51:74:51:0,74,1247 +chrX 3568953 . A C 1407 . AC=2;AF=0.667;AN=3;AS_AltDP=50;AS_QD=17.11;BaseQRankSum=2.305;DP=84;ExcessHet=0.0000;FS=0.000;MQ=59.84;MQRankSum=0.841;QD=17.11;ReadPosRankSum=-0.277;SOR=0.659;VarDP=84 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:858,0:0,0,16,12 0/1:34,22:56:99:579,0,867:18,16,10,12 +chrX 3569709 . C G 1664 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=20.17;BaseQRankSum=0.557;DP=89;ExcessHet=0.0000;FS=3.242;MQ=60.00;MQRankSum=0;QD=20.17;ReadPosRankSum=-0.37;SOR=0.409;VarDP=84 GT:AD:DP:GQ:PL:SB 1:1,34:35:99:1062,0:0,1,16,18 0/1:25,24:49:99:632,0,662:8,17,7,17 +chrX 3570008 . G GA,GAAAA 995.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=10,16;AS_QD=32.23,32.42;BaseQRankSum=-1.417;DP=45;ExcessHet=0.0000;FS=10.017;MQ=58.95;MQRankSum=-0.862;QD=35.69;ReadPosRankSum=0.955;SOR=0.610;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,10,0:10:99:419,0,420:0,0,5,5 0/2:3,0,16:19:2:616,625,676,0,50,2:0,3,10,6 +chrX 3570027 . A ATATG 350.97 . AC=1;AF=0.333;AN=3;AS_AltDP=9;AS_QD=28.34;DP=30;ExcessHet=0.0000;FS=0.000;MQ=57.69;QD=43.33;SOR=0.892;VarDP=9 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,9:9:99:.:390,0:0,0,5,4 0/0:.:19:39:18:0,39,585 +chrX 3570033 . A ATATATATATGTATATATATG 344.97 . AC=2;AF=0.667;AN=3;AS_AltDP=10;AS_QD=26.34;DP=30;ExcessHet=0.0000;FS=0.000;MQ=56.80;QD=38.40;SOR=0.693;VarDP=10 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:11:99:11:0,112 1/1:0,10:10:29:.:384,29,0:0,0,5,5 +chrX 3570071 . G A 124 . AC=2;AF=1.00;AN=2;AS_AltDP=4;AS_QD=26.75;DP=23;ExcessHet=0.0000;FS=0.000;MQ=53.13;QD=38.50;SOR=0.693;VarDP=4 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB .:.:7:0:7:.:.:0,0 1|1:0,4:4:12:.:0|1:3570071_G_A:154,12,0:3570071:0,0,2,2 +chrX 3570073 . A G 124 . AC=2;AF=0.667;AN=3;AS_AltDP=4;AS_QD=29.47;DP=20;ExcessHet=0.0000;FS=0.000;MQ=54.43;QD=38.50;SOR=0.693;VarDP=4 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:5:25:5:.:.:0,25 1|1:0,4:4:11:.:0|1:3570071_G_A:154,11,0:3570071:0,0,2,2 +chrX 3570093 . ATATATG A 113.97 . AC=2;AF=0.667;AN=3;AS_AltDP=4;AS_QD=28.06;DP=26;ExcessHet=0.0000;FS=0.000;MQ=53.99;QD=38.25;SOR=0.693;VarDP=4 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:5:25:5:.:.:0,25 1|1:0,4:4:11:.:0|1:3570071_G_A:153,11,0:3570071:0,0,2,2 +chrX 3570131 . A *,AT 747.97 . AC=0,2;AF=0.00,0.667;AN=3;AS_AltDP=0,4;AS_QD=32.01,29.91;DP=29;ExcessHet=0.0000;FS=0.000;MQ=54.42;QD=196.75;SOR=0.693;VarDP=4 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:10:45:10:.:.:0,45,45 2|2:0,0,4:4:10:.:0|1:3570071_G_A:787,201,156,57,10,0:3570071:0,0,2,2 +chrX 3570266 . G GTATATATGTA,GTATATATGTATATATATGTATATATGTATATATGTA 572.97 . AC=1,0;AF=0.333,0.00;AN=3;AS_AltDP=0,0;AS_QD=31.03,28.14;DP=62;ExcessHet=0.0000;FS=0.000;MQ=51.34;QD=204.00;SOR=0.368;VarDP=3 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:90:31:0,90,90 0/1:3,0,0:3:5:.:612,0,71,5,74,77:2,1,0,0 +chrX 3570318 . G GTATATA,A 395 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=0,10;AS_QD=0.23,11.81;BaseQRankSum=1.419;DP=61;ExcessHet=0.0000;FS=0.000;MQ=52.94;MQRankSum=-0.782;QD=11.81;ReadPosRankSum=-0.936;SOR=0.905;VarDP=36 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:23:35:21:0,35,35 0/2:26,0,10:36:99:.:425,419,1447,0,1035,1042:12,14,4,6 +chrX 3570330 . A ATATATATGTGTATATATG,ATATATGTATATATATGTGTATATATG 507.97 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=0,11;AS_QD=5.68,18.23;BaseQRankSum=1.641;DP=68;ExcessHet=0.0000;FS=0.000;MQ=53.66;MQRankSum=-2.587;QD=18.23;ReadPosRankSum=-0.689;SOR=0.569;VarDP=30 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:23:35:21:0,35,35 0/2:19,0,11:30:99:.:547,439,1283,0,773,1034:8,11,5,6 +chrX 3571114 . T A 2854 . AC=3;AF=1.00;AN=3;AS_AltDP=87;AS_QD=33.15;DP=88;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.15;SOR=1.090;VarDP=87 GT:AD:DP:GQ:PL:SB 1:0,22:22:99:755,0:0,0,16,6 1/1:0,65:65:99:2129,195,0:0,0,35,30 +chrX 3571150 . C T 1036 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=18.07;BaseQRankSum=0.772;DP=90;ExcessHet=0.0000;FS=1.022;MQ=60.00;MQRankSum=0;QD=18.07;ReadPosRankSum=1.647;SOR=0.544;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,620 0/1:21,38:59:99:.:1066,0,488:12,9,20,18 +chrX 3571786 . G C 1607 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=19.72;BaseQRankSum=-2.816;DP=87;ExcessHet=0.0000;FS=0.879;MQ=60.00;MQRankSum=0;QD=19.72;ReadPosRankSum=-0.536;SOR=0.874;VarDP=83 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:1022,0:0,0,14,16 0/1:29,24:53:99:615,0,849:13,16,8,16 +chrX 3572746 . G C 693 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=11.66;BaseQRankSum=1.232;DP=93;ExcessHet=0.0000;FS=0.979;MQ=60.00;MQRankSum=0;QD=11.66;ReadPosRankSum=-0.646;SOR=0.626;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,624 0/1:35,27:62:99:.:723,0,935:16,19,14,13 +chrX 3573020 . G T 1691 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=19.78;BaseQRankSum=2.49;DP=90;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=19.78;ReadPosRankSum=0.879;SOR=0.670;VarDP=87 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:922,0:0,0,14,15 0/1:30,28:58:99:799,0,794:14,16,13,15 +chrX 3573178 . G A 711 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=15.77;BaseQRankSum=0.865;DP=83;ExcessHet=0.0000;FS=1.134;MQ=60.00;MQRankSum=0;QD=15.77;ReadPosRankSum=0.581;SOR=0.611;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:34:99:34:0,909 0/1:20,27:47:99:.:741,0,490:9,11,14,13 +chrX 3573289 . G C 2012 . AC=2;AF=0.667;AN=3;AS_AltDP=68;AS_QD=20.02;BaseQRankSum=3.458;DP=104;ExcessHet=0.0000;FS=5.254;MQ=60.00;MQRankSum=0;QD=20.02;ReadPosRankSum=0.966;SOR=0.569;VarDP=102 GT:AD:DP:GQ:PL:SB 1:0,37:37:99:1160,0:0,0,16,21 0/1:34,31:65:99:882,0,876:14,20,20,11 +chrX 3573446 . C T 917 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=15.78;BaseQRankSum=1.522;DP=90;ExcessHet=0.0000;FS=5.057;MQ=60.00;MQRankSum=0;QD=15.78;ReadPosRankSum=0.936;SOR=0.646;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,769 0/1:27,33:60:99:.:947,0,693:16,11,15,18 +chrX 3573671 . A G 1629 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=21.83;BaseQRankSum=-0.286;DP=81;ExcessHet=0.0000;FS=3.519;MQ=59.91;MQRankSum=0;QD=21.83;ReadPosRankSum=0.077;SOR=0.700;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:973,0:0,0,18,12 0/1:21,25:46:99:686,0,571:9,12,12,13 +chrX 3573741 . T C 1684 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=21.16;BaseQRankSum=1.071;DP=84;ExcessHet=0.0000;FS=4.988;MQ=60.00;MQRankSum=0;QD=21.16;ReadPosRankSum=1.063;SOR=1.322;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:958,0:0,0,19,10 0/1:25,27:52:99:756,0,683:15,10,21,6 +chrX 3574469 . G A 1621 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=21.44;BaseQRankSum=0.924;DP=79;ExcessHet=0.0000;FS=9.224;MQ=59.69;MQRankSum=0;QD=21.44;ReadPosRankSum=0.466;SOR=0.167;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:948,0:0,0,14,15 0/1:22,26:48:99:703,0,561:5,17,10,16 +chrX 3576821 . C A 1238 . AC=2;AF=0.667;AN=3;AS_AltDP=42;AS_QD=16.47;BaseQRankSum=0.895;DP=78;ExcessHet=0.0000;FS=3.031;MQ=60.00;MQRankSum=0;QD=16.47;ReadPosRankSum=-0.322;SOR=0.967;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:863,0:0,0,8,17 0/1:35,17:52:99:405,0,945:18,17,10,7 +chrX 3576846 . A G 903 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=33.32;DP=80;ExcessHet=0.0000;FS=0.000;MQ=59.07;QD=33.32;SOR=1.179;VarDP=28 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,28:28:99:.:933,0:0,0,11,17 0/0:.:51:99:51:0,118,1444 +chrX 3577172 . G A 885 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=16.94;BaseQRankSum=2.072;DP=82;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=16.94;ReadPosRankSum=0.814;SOR=0.636;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:99:28:0,630 0/1:23,31:54:99:.:915,0,607:13,10,17,14 +chrX 3577198 . G A 510 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=11.25;BaseQRankSum=1.843;DP=79;ExcessHet=0.0000;FS=2.527;MQ=60.00;MQRankSum=0;QD=11.25;ReadPosRankSum=-2.824;SOR=0.705;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:99:28:0,630 0/1:28,20:48:99:.:540,0,744:16,12,9,11 +chrX 3577488 . C T 2245 . AC=2;AF=0.667;AN=3;AS_AltDP=75;AS_QD=23.70;BaseQRankSum=1.648;DP=98;ExcessHet=0.0000;FS=2.066;MQ=60.00;MQRankSum=0;QD=23.70;ReadPosRankSum=-1.689;SOR=0.892;VarDP=96 GT:AD:DP:GQ:PL:SB 1:0,39:39:99:1260,0:0,0,13,26 0/1:21,36:57:99:1015,0,489:11,10,20,16 +chrX 3577986 . G A 1786 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=21.88;BaseQRankSum=2.901;DP=89;ExcessHet=0.0000;FS=4.562;MQ=60.00;MQRankSum=0;QD=21.88;ReadPosRankSum=0.272;SOR=0.480;VarDP=83 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:917,0:0,0,10,17 0/1:25,31:56:99:899,0,620:15,10,18,13 +chrX 3579045 . C G 2323 . AC=3;AF=1.00;AN=3;AS_AltDP=72;AS_QD=32.68;DP=72;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.68;SOR=1.073;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:770,0:0,0,9,14 1/1:0,49:49:99:1583,146,0:0,0,21,28 +chrX 3579750 . AAAAG A 1631.97 . AC=2;AF=0.667;AN=3;AS_AltDP=40;AS_QD=28.81;BaseQRankSum=2.028;DP=66;ExcessHet=0.0000;FS=8.392;MQ=59.67;MQRankSum=0;QD=28.81;ReadPosRankSum=-0.701;SOR=0.151;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,20:20:99:899,0:0,0,7,13 0/1:18,20:38:99:772,0,652:14,4,15,5 +chrX 3580516 . C T 1474 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=19.28;BaseQRankSum=0.574;DP=81;ExcessHet=0.0000;FS=3.244;MQ=60.00;MQRankSum=0;QD=19.28;ReadPosRankSum=-1.21;SOR=1.050;VarDP=78 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:824,0:0,0,11,14 0/1:27,26:53:99:680,0,695:14,13,10,16 +chrX 3581998 . G A 1499 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=19.35;BaseQRankSum=-0.195;DP=80;ExcessHet=0.0000;FS=0.892;MQ=60.00;MQRankSum=0;QD=19.35;ReadPosRankSum=0.067;SOR=0.576;VarDP=79 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:1047,0:0,0,18,15 0/1:27,19:46:99:482,0,750:16,11,11,8 +chrX 3582957 . A G 1730 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=19.13;BaseQRankSum=1.282;DP=95;ExcessHet=0.0000;FS=0.818;MQ=60.00;MQRankSum=0;QD=19.13;ReadPosRankSum=-0.239;SOR=0.746;VarDP=92 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:768,0:0,0,12,12 0/1:33,35:68:99:992,0,893:17,16,16,19 +chrX 3583055 . A G 1860 . AC=2;AF=0.667;AN=3;AS_AltDP=64;AS_QD=18.35;BaseQRankSum=-0.527;DP=105;ExcessHet=0.0000;FS=5.035;MQ=60.00;MQRankSum=0;QD=18.35;ReadPosRankSum=0.315;SOR=1.096;VarDP=103 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:869,0:0,0,10,15 0/1:39,39:78:99:1021,0,1040:20,19,16,23 +chrX 3583871 . G C 970 . AC=2;AF=0.667;AN=3;AS_AltDP=34;AS_QD=18.52;BaseQRankSum=0.031;DP=55;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=18.52;ReadPosRankSum=-0.39;SOR=0.662;VarDP=54 GT:AD:DP:GQ:PL:SB 1:0,22:22:99:698,0:0,0,13,9 0/1:20,12:32:99:302,0,537:12,8,7,5 +chrX 3584126 . TGAGA T 2026.97 . AC=2;AF=0.667;AN=3;AS_AltDP=50;AS_QD=28.69;BaseQRankSum=-1.875;DP=75;ExcessHet=0.0000;FS=5.138;MQ=60.00;MQRankSum=0;QD=28.69;ReadPosRankSum=-0.587;SOR=0.423;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:1088,0:0,0,12,13 0/1:22,25:47:99:978,0,848:8,14,14,11 +chrX 3584698 . A G 1701 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=21.37;BaseQRankSum=-1.96;DP=86;ExcessHet=0.0000;FS=0.947;MQ=60.00;MQRankSum=0;QD=21.37;ReadPosRankSum=0.516;SOR=0.509;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:1061,0:0,0,18,15 0/1:23,25:48:99:670,0,656:14,9,14,11 +chrX 3584855 . CA C 1551.97 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=19.64;BaseQRankSum=-0.792;DP=87;ExcessHet=0.0000;FS=12.550;MQ=60.00;MQRankSum=0;QD=19.64;ReadPosRankSum=1.131;SOR=1.044;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:976,0:0,0,17,15 0/1:24,25:49:99:615,0,584:9,15,18,7 +chrX 3585538 . CTT C 1875.97 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=22.53;BaseQRankSum=0.881;DP=94;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=22.53;ReadPosRankSum=0.632;SOR=0.698;VarDP=85 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:933,0:0,0,15,10 0/1:29,31:60:99:982,0,812:15,14,14,17 +chrX 3587412 . A G 1825 . AC=2;AF=0.667;AN=3;AS_AltDP=64;AS_QD=18.55;BaseQRankSum=0.319;DP=105;ExcessHet=0.0000;FS=1.730;MQ=60.00;MQRankSum=0;QD=18.55;ReadPosRankSum=-0.195;SOR=0.487;VarDP=100 GT:AD:DP:GQ:PL:SB 1:0,37:37:99:1165,0:0,0,17,20 0/1:36,27:63:99:690,0,957:13,23,10,17 +chrX 3587807 . T C 1975 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=32.87;DP=96;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.87;SOR=0.941;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,501 1/1:0,61:61:99:.:2005,183,0:0,0,27,34 +chrX 3588628 . C CA 711.97 . AC=2;AF=0.667;AN=3;AS_AltDP=40;AS_QD=18.78;DP=89;ExcessHet=0.0000;FS=0.000;MQ=58.87;QD=18.78;SOR=1.292;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,501 1/1:0,40:40:99:.:751,116,0:0,0,15,25 +chrX 3590378 . A G 2797 . AC=3;AF=1.00;AN=3;AS_AltDP=87;AS_QD=32.49;DP=88;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.49;SOR=1.030;VarDP=87 GT:AD:DP:GQ:PL:SB 1:0,20:20:99:674,0:0,0,9,11 1/1:0,67:67:99:2153,200,0:0,0,28,39 +chrX 3590525 . C CA,CAAAAAAAAAA,CAAAA,CAAAAA 1209.97 . AC=1,0,1,1;AF=0.333,0.00,0.333,0.333;AN=3;AS_AltDP=6,2,5,12;AS_QD=20.29,1.00,32.18,34.98;BaseQRankSum=0.566;DP=56;ExcessHet=0.0000;FS=3.736;MQ=58.72;MQRankSum=-0.14;QD=48.04;ReadPosRankSum=0.282;SOR=0.861;VarDP=26 GT:AD:DP:GQ:PL:SB 1:1,6,2,0,0:9:99:142,0,139,186,186:0,1,5,3 3/4:0,0,0,5,12:17:34:1107,751,675,751,675,675,236,235,235,157,118,117,117,0,34:0,0,10,7 +chrX 3590652 . G A 1256 . AC=2;AF=0.667;AN=3;AS_AltDP=37;AS_QD=34.76;DP=66;ExcessHet=0.0000;FS=0.000;MQ=59.75;QD=34.76;SOR=0.859;VarDP=37 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:26:84:26:0,84 1/1:0,37:37:99:.:1286,111,0:0,0,20,17 +chrX 3590697 . C CA 330.97 . AC=2;AF=0.667;AN=3;AS_AltDP=23;AS_QD=16.09;DP=71;ExcessHet=0.0000;FS=0.000;MQ=58.04;QD=16.09;SOR=0.776;VarDP=23 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:26:84:26:0,84 1/1:0,23:23:65:.:370,65,0:0,0,12,11 +chrX 3590875 . C T 1949 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=33.54;DP=87;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.54;SOR=0.796;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:26:84:26:0,84 1/1:0,59:59:99:.:1979,177,0:0,0,28,31 +chrX 3591226 . T C 1661 . AC=3;AF=1.00;AN=3;AS_AltDP=57;AS_QD=28.66;BaseQRankSum=0.868;DP=60;ExcessHet=0.0000;FS=0.000;MQ=59.56;MQRankSum=3.329;QD=28.66;ReadPosRankSum=0.87;SOR=0.960;VarDP=59 GT:AD:DP:GQ:PL:SB 1:1,19:20:99:510,0:1,0,5,14 1/1:1,38:39:82:1181,82,0:0,1,20,18 +chrX 3591272 . C CA,CAA 1542.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=22,15;AS_QD=34.50,28.75;DP=69;ExcessHet=0.0000;FS=0.000;MQ=59.18;QD=42.76;SOR=0.859;VarDP=37 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:18:99:18:0,352,352 1/2:0,22,15:37:99:.:1582,367,248,536,0,428:0,0,20,17 +chrX 3591287 . G GA 2433.97 . AC=3;AF=1.00;AN=3;AS_AltDP=66;AS_QD=34.15;DP=70;ExcessHet=0.0000;FS=0.000;MQ=59.26;QD=37.47;SOR=0.886;VarDP=66 GT:AD:DP:GQ:PL:SB 1:0,20:20:99:621,0:0,0,5,15 1/1:0,46:46:99:1852,138,0:0,0,25,21 +chrX 3591741 . C T 660 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=32.86;DP=77;ExcessHet=0.0000;FS=0.000;MQ=59.78;QD=32.86;SOR=0.990;VarDP=21 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,21:21:99:.:690,0:0,0,12,9 0/0:.:55:64:55:0,64,1150 +chrX 3591808 . CTGCT C 725.97 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=23.32;DP=73;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=45.00;SOR=1.061;VarDP=17 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,17:17:99:.:765,0:0,0,10,7 0/0:.:55:64:55:0,64,1150 +chrX 3591812 . T *,C 1900 . AC=1,2;AF=0.333,0.667;AN=3;AS_AltDP=0,60;AS_QD=30.97,32.17;DP=81;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.17;SOR=0.828;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,17,0:17:99:765,0,765:0,0,10,7 2/2:0,0,60:60:99:1930,1930,1930,179,179,0:0,0,31,29 +chrX 3592236 . A G 530 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=10.57;BaseQRankSum=0.151;DP=86;ExcessHet=0.0000;FS=2.407;MQ=60.00;MQRankSum=0;QD=10.57;ReadPosRankSum=2.092;SOR=0.352;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,481 0/1:30,23:53:99:.:560,0,773:11,19,11,12 +chrX 3593156 . G A 566 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=10.28;BaseQRankSum=2.026;DP=89;ExcessHet=0.0000;FS=5.380;MQ=60.00;MQRankSum=0;QD=10.28;ReadPosRankSum=0.064;SOR=0.434;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,481 0/1:35,23:58:99:.:596,0,897:13,22,12,11 +chrX 3595224 . AATATG A 2528.97 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=30.94;BaseQRankSum=-0.837;DP=88;ExcessHet=0.0000;FS=0.000;MQ=59.99;MQRankSum=0;QD=30.94;ReadPosRankSum=-0.244;SOR=0.779;VarDP=83 GT:AD:DP:GQ:PL:SB 1:0,34:34:99:1520,0:0,0,14,20 0/1:22,27:49:99:1048,0,832:9,13,10,17 +chrX 3595517 . C G 2254 . AC=3;AF=1.00;AN=3;AS_AltDP=68;AS_QD=33.59;DP=74;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.59;SOR=1.098;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,18:18:99:576,0:0,0,9,9 1/1:0,50:50:99:1708,150,0:0,0,31,19 +chrX 3595636 . AC A 1725.97 . AC=2;AF=0.667;AN=3;AS_AltDP=48;AS_QD=22.92;BaseQRankSum=1.19;DP=80;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=22.92;ReadPosRankSum=0.363;SOR=0.631;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:1215,0:0,0,15,16 0/1:29,17:46:99:550,0,1017:15,14,9,8 +chrX 3596713 . GTATC G,GTATCTATC 286.97 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=0,13;AS_QD=0.00,9.31;BaseQRankSum=1.173;DP=78;ExcessHet=0.0000;FS=3.210;MQ=60.00;MQRankSum=0;QD=9.31;ReadPosRankSum=-0.674;SOR=1.314;VarDP=35 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,571,571 0/2:22,0,13:35:99:.:326,441,1662,0,928,1148:14,8,10,3 +chrX 3596726 . T C,TATCC,TATCTATCC 1154 . AC=2,0,0;AF=0.667,0.00,0.00;AN=3;AS_AltDP=37,0,0;AS_QD=22.77,0.00,0.00;BaseQRankSum=-1.172;DP=73;ExcessHet=0.0000;FS=4.816;MQ=60.00;MQRankSum=0;QD=22.77;ReadPosRankSum=0.835;SOR=0.217;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,16,0,0:16:99:560,0,944,752:0,0,10,6 0/1:15,21,0,0:36:99:624,0,670,723,632,1675,715,628,1630,1775:12,3,13,8 +chrX 3597295 . G A 2351 . AC=3;AF=1.00;AN=3;AS_AltDP=71;AS_QD=32.62;BaseQRankSum=2.447;DP=79;ExcessHet=0.0000;FS=7.241;MQ=58.67;MQRankSum=1.704;QD=32.62;ReadPosRankSum=-0.121;SOR=0.666;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,22:22:99:755,0:0,0,8,14 1/1:2,49:51:99:1626,109,0:2,0,22,27 +chrX 3597347 . C T 2164 . AC=3;AF=1.00;AN=3;AS_AltDP=68;AS_QD=31.34;BaseQRankSum=2.506;DP=70;ExcessHet=0.0000;FS=3.041;MQ=57.90;MQRankSum=-0.171;QD=31.34;ReadPosRankSum=1.005;SOR=0.131;VarDP=70 GT:AD:DP:GQ:PL:SB 1:1,18:19:99:586,0:0,1,6,12 1/1:1,50:51:99:1608,142,0:0,1,26,24 +chrX 3597466 . G A 438 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=16.14;BaseQRankSum=1.179;DP=50;ExcessHet=0.0000;FS=8.557;MQ=57.20;MQRankSum=-1.9;QD=16.14;ReadPosRankSum=-1.516;SOR=1.000;VarDP=29 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:20:99:20:0,551 0/1:13,16:29:99:.:468,0,354:9,4,6,10 +chrX 3597478 . CAA C,CAAAAAAAAAAA 573.97 . AC=2,0;AF=0.667,0.00;AN=3;AS_AltDP=24,5;AS_QD=18.03,0.00;BaseQRankSum=1.02;DP=71;ExcessHet=0.0000;FS=11.479;MQ=57.83;MQRankSum=-0.287;QD=15.72;ReadPosRankSum=0.669;SOR=1.269;VarDP=39 GT:AD:DP:GQ:PL:SB 1:1,18,0:19:99:494,0,525:0,1,13,5 0/1:9,6,5:20:99:119,0,661,121,156,588:3,6,6,5 +chrX 3597499 . A C 1444 . AC=2;AF=0.667;AN=3;AS_AltDP=42;AS_QD=22.68;BaseQRankSum=1.212;DP=68;ExcessHet=0.0000;FS=0.000;MQ=57.88;MQRankSum=1.909;QD=22.68;ReadPosRankSum=1.365;SOR=0.636;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:940,0:0,0,17,6 0/1:23,19:42:99:534,0,513:13,10,6,13 +chrX 3598592 . A AAAAGAAAG,AAAAAAAAGAAAG,AAAAAAAAAAAAAAAGAAAG,AAAAG,AAAAAAAAG,AAAAAAAAAG 1506.97 . AC=0,1,0,0,1,1;AF=0.00,0.333,0.00,0.00,0.333,0.333;AN=3;AS_AltDP=0,4,0,0,7,18;AS_QD=0.00,30.27,29.04,23.75,28.73,30.56;BaseQRankSum=1.655;DP=69;ExcessHet=0.0000;FS=14.768;MQ=59.44;MQRankSum=0;QD=46.85;ReadPosRankSum=0.253;SOR=0.935;VarDP=33 GT:AD:DP:GQ:PL:SB 2:0,0,4,0,0,0,0:4:99:634,645,0,246,535,535,535:0,0,2,2 5/6:4,0,0,0,0,7,18:29:70:912,747,892,747,892,892,747,892,892,892,817,976,976,976,1335,260,360,360,360,372,271,70,186,186,186,197,0,105:4,0,9,16 +chrX 3599061 . G GT 782.97 . AC=2;AF=0.667;AN=3;AS_AltDP=32;AS_QD=14.95;BaseQRankSum=0.743;DP=67;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.95;ReadPosRankSum=0.973;SOR=0.868;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,19:19:99:559,0:0,0,14,5 0/1:23,13:36:99:263,0,811:15,8,8,5 +chrX 3599066 . T TAA,TTAA 431.97 . AC=1,0;AF=0.333,0.00;AN=3;AS_AltDP=16,0;AS_QD=15.70,4.43;BaseQRankSum=-0.747;DP=85;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=15.70;ReadPosRankSum=1.165;SOR=0.892;VarDP=30 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:34:99:34:0,452,452 0/1:14,16,0:30:99:.:471,0,636,409,414,938:9,5,11,5 +chrX 3599710 . C T 2347 . AC=2;AF=0.667;AN=3;AS_AltDP=68;AS_QD=24.76;BaseQRankSum=-1.59;DP=96;ExcessHet=0.0000;FS=0.848;MQ=60.00;MQRankSum=0;QD=24.76;ReadPosRankSum=0.338;SOR=0.551;VarDP=96 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,32:32:99:.:.:1428,0:.:0,0,13,19 0|1:28,36:64:99:0|1:3599710_C_T:949,0,731:3599710:12,16,19,17 +chrX 3599720 . T G 3951 . AC=3;AF=1.00;AN=3;AS_AltDP=97;AS_QD=32.31;DP=99;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=41.04;SOR=0.845;VarDP=97 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,34:34:99:.:.:1478,0:.:0,0,13,21 1|1:0,63:63:99:0|1:3599710_C_T:2503,189,0:3599710:0,0,32,31 +chrX 3599895 . A G 2816 . AC=3;AF=1.00;AN=3;AS_AltDP=90;AS_QD=31.62;DP=93;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.62;SOR=0.990;VarDP=90 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:852,0:0,0,17,11 1/1:0,62:62:99:1994,185,0:0,0,34,28 +chrX 3600335 . C T 2734 . AC=3;AF=1.00;AN=3;AS_AltDP=82;AS_QD=33.71;DP=90;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.71;SOR=0.846;VarDP=82 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:1127,0:0,0,21,12 1/1:0,49:49:99:1637,147,0:0,0,23,26 +chrX 3600436 . G T 2867 . AC=3;AF=1.00;AN=3;AS_AltDP=88;AS_QD=32.55;BaseQRankSum=2.382;DP=92;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=32.55;ReadPosRankSum=0.456;SOR=0.242;VarDP=89 GT:AD:DP:GQ:PL:SB 1:1,37:38:99:1211,0:1,0,21,16 1/1:0,51:51:99:1686,152,0:0,0,24,27 +chrX 3600513 . G GTGTAAAGTTTCAGTCA 3490.97 . AC=3;AF=1.00;AN=3;AS_AltDP=79;AS_QD=27.15;DP=89;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.68;SOR=1.136;VarDP=79 GT:AD:DP:GQ:PL:SB 1:0,36:36:99:1598,0:0,0,17,19 1/1:0,43:43:99:1932,128,0:0,0,15,28 +chrX 3600523 . A AAAAGTTCTGGAGATCTGCTGGAC 3148.97 . AC=3;AF=1.00;AN=3;AS_AltDP=72;AS_QD=26.40;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.28;SOR=1.148;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:1086,0:0,0,13,12 1/1:0,47:47:99:2102,141,0:0,0,16,31 +chrX 3601278 . CT C 1142.97 . AC=3;AF=1.00;AN=3;AS_AltDP=50;AS_QD=22.73;BaseQRankSum=-0.643;DP=75;ExcessHet=0.0000;FS=3.037;MQ=59.94;MQRankSum=0;QD=22.73;ReadPosRankSum=-1.244;SOR=0.141;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,15:15:99:363,0:0,0,9,6 1/1:2,35:37:78:819,78,0:2,0,18,17 +chrX 3601857 . T A,TA 407 . AC=1,0;AF=0.333,0.00;AN=3;AS_AltDP=23,0;AS_QD=7.67,0.00;BaseQRankSum=-0.479;DP=97;ExcessHet=0.0000;FS=1.004;MQ=60.00;MQRankSum=0;QD=7.67;ReadPosRankSum=0.041;SOR=0.560;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,421,421 0/1:34,23,0:57:99:.:437,0,979,572,932,1584:19,15,12,11 +chrX 3601858 . T A,TA,TAA 2675 . AC=3,0,0;AF=1.00,0.00,0.00;AN=3;AS_AltDP=73,0,0;AS_QD=35.11,29.51,33.72;DP=88;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=37.05;SOR=0.836;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,15,0,0:15:99:567,0,486,526:0,0,7,8 1/1:0,58,0,0:58:99:2138,195,0,2123,193,2261,2021,175,2163,2512:0,0,32,26 +chrX 3602325 . A G 629 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=10.98;BaseQRankSum=-1.369;DP=94;ExcessHet=0.0000;FS=10.165;MQ=60.00;MQRankSum=0;QD=10.98;ReadPosRankSum=-0.171;SOR=2.019;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,661 0/1:33,27:60:99:.:659,0,911:13,20,5,22 +chrX 3602377 . TA T 4151.97 . AC=3;AF=1.00;AN=3;AS_AltDP=98;AS_QD=27.34;DP=100;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=42.77;SOR=1.122;VarDP=98 GT:AD:DP:GQ:PL:SB 1:0,41:41:99:1830,0:0,0,19,22 1/1:0,57:57:99:2361,172,0:0,0,21,36 +chrX 3602384 . AATTAT A 3038.97 . AC=2;AF=0.667;AN=3;AS_AltDP=73;AS_QD=31.41;BaseQRankSum=-0.608;DP=103;ExcessHet=0.0000;FS=8.012;MQ=60.00;MQRankSum=0;QD=31.41;ReadPosRankSum=-0.75;SOR=0.208;VarDP=98 GT:AD:DP:GQ:PL:SB 1:0,42:42:99:1875,0:0,0,19,23 0/1:25,31:56:99:1203,0,956:7,18,15,16 +chrX 3603837 . C T 804 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=14.89;BaseQRankSum=-1.457;DP=91;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.89;ReadPosRankSum=-1.325;SOR=0.741;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,219 0/1:24,32:56:99:.:834,0,626:10,14,13,19 +chrX 3604131 . G C 2422 . AC=3;AF=1.00;AN=3;AS_AltDP=73;AS_QD=33.59;DP=75;ExcessHet=0.0000;FS=0.000;MQ=59.71;QD=33.59;SOR=0.898;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:894,0:0,0,15,11 1/1:0,47:47:99:1558,141,0:0,0,25,22 +chrX 3605012 . GACACACACAC GACACACAC,G 808.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=16,12;AS_QD=13.40,17.15;BaseQRankSum=2.287;DP=68;ExcessHet=0.0000;FS=1.250;MQ=57.07;MQRankSum=0;QD=20.19;ReadPosRankSum=-0.985;SOR=0.473;VarDP=42 GT:AD:DP:GQ:PL:SB 1:1,16,0:17:99:402,0,412:0,1,6,10 0/2:13,0,12:25:99:446,485,1029,0,544,507:8,5,8,4 +chrX 3606268 . T C 3083 . AC=3;AF=1.00;AN=3;AS_AltDP=101;AS_QD=30.82;DP=103;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.82;SOR=1.029;VarDP=101 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:987,0:0,0,19,13 1/1:0,69:69:99:2126,206,0:0,0,39,30 +chrX 3606452 . T C 3196 . AC=3;AF=1.00;AN=3;AS_AltDP=100;AS_QD=32.26;DP=101;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.26;SOR=0.775;VarDP=100 GT:AD:DP:GQ:PL:SB 1:0,35:35:99:1147,0:0,0,17,18 1/1:0,65:65:99:2079,194,0:0,0,31,34 +chrX 3606562 . T C 2684 . AC=3;AF=1.00;AN=3;AS_AltDP=83;AS_QD=32.70;DP=86;ExcessHet=0.0000;FS=0.000;MQ=59.72;QD=32.70;SOR=1.320;VarDP=83 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:804,0:0,0,9,15 1/1:0,59:59:99:1910,177,0:0,0,22,37 +chrX 3606696 . TAC T 4217.97 . AC=3;AF=1.00;AN=3;AS_AltDP=96;AS_QD=31.84;DP=97;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.34;SOR=0.778;VarDP=96 GT:AD:DP:GQ:PL:SB 1:0,40:40:99:1769,0:0,0,20,20 1/1:0,56:56:99:2488,169,0:0,0,26,30 +chrX 3608578 . TACACACACACACACACAC TACACACACACACACACACAC,T,TAC 2037.97 . AC=1,0,2;AF=0.333,0.00,0.667;AN=3;AS_AltDP=12,3,40;AS_QD=18.71,27.82,23.21;BaseQRankSum=-0.669;DP=68;ExcessHet=0.0000;FS=2.788;MQ=60.00;MQRankSum=0;QD=36.44;ReadPosRankSum=1.372;SOR=0.248;VarDP=57 GT:AD:DP:GQ:PL:SB 1:2,12,0,0:14:99:262,0,321,321:2,0,4,8 3/3:0,0,3,40:43:35:1815,1659,1601,1345,1349,1287,130,133,35,0:0,0,30,13 +chrX 3610673 . G C 845 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=17.16;BaseQRankSum=-0.38;DP=83;ExcessHet=0.0000;FS=13.904;MQ=60.00;MQRankSum=0;QD=17.16;ReadPosRankSum=-0.838;SOR=1.558;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:90:31:0,90 0/1:19,32:51:99:.:875,0,448:7,12,22,10 +chrX 3611876 . G A 1905 . AC=2;AF=0.667;AN=3;AS_AltDP=43;AS_QD=25.57;DP=74;ExcessHet=0.0000;FS=0.000;MQ=53.08;QD=45.00;SOR=0.739;VarDP=43 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:31:90:31:.:.:0,90 1|1:0,43:43:99:.:0|1:3611876_G_A:1935,129,0:3611876:0,0,21,22 +chrX 3611884 . A G 1985 . AC=2;AF=0.667;AN=3;AS_AltDP=45;AS_QD=29.45;DP=76;ExcessHet=0.0000;FS=0.000;MQ=53.41;QD=44.78;SOR=0.737;VarDP=45 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:31:90:31:.:.:0,90 1|1:0,45:45:99:.:0|1:3611876_G_A:2015,135,0:3611876:0,0,22,23 +chrX 3611888 . A G 1985 . AC=2;AF=0.667;AN=3;AS_AltDP=45;AS_QD=34.75;DP=77;ExcessHet=0.0000;FS=0.000;MQ=53.56;QD=44.78;SOR=0.737;VarDP=45 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:31:90:31:.:.:0,90 1|1:0,45:45:99:.:0|1:3611876_G_A:2015,135,0:3611876:0,0,22,23 +chrX 3611928 . A G 1473 . AC=2;AF=0.667;AN=3;AS_AltDP=48;AS_QD=31.31;DP=80;ExcessHet=0.0000;FS=0.000;MQ=56.21;QD=31.31;SOR=0.776;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:90:31:0,90 1/1:0,48:48:99:.:1503,144,0:0,0,23,25 +chrX 3611941 . T C 1304 . AC=2;AF=0.667;AN=3;AS_AltDP=43;AS_QD=31.02;DP=77;ExcessHet=0.0000;FS=0.000;MQ=57.11;QD=31.02;SOR=0.836;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:90:31:0,90 1/1:0,43:43:99:.:1334,128,0:0,0,20,23 +chrX 3612153 . G T 1791 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=31.95;DP=93;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.95;SOR=1.140;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:90:31:0,90 1/1:0,57:57:99:.:1821,170,0:0,0,23,34 +chrX 3612334 . C T 457 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=10.15;BaseQRankSum=0.482;DP=81;ExcessHet=0.0000;FS=2.552;MQ=60.00;MQRankSum=0;QD=10.15;ReadPosRankSum=-0.158;SOR=0.899;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:90:31:0,90 0/1:29,19:48:99:.:487,0,789:13,16,11,8 +chrX 3612471 . A C 1677 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=33.47;DP=83;ExcessHet=0.0000;FS=0.000;MQ=59.64;QD=33.47;SOR=1.094;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:90:31:0,90 1/1:0,51:51:99:.:1707,153,0:0,0,30,21 +chrX 3612697 . A G 1869 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=32.74;DP=91;ExcessHet=0.0000;FS=0.000;MQ=59.76;QD=32.74;SOR=1.179;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:90:31:0,90 1/1:0,58:58:99:.:1899,174,0:0,0,23,35 +chrX 3612748 . C G 1955 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=33.64;DP=92;ExcessHet=0.0000;FS=0.000;MQ=59.76;QD=33.64;SOR=1.034;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:90:31:0,90 1/1:0,59:59:99:.:1985,177,0:0,0,25,34 +chrX 3613150 . CAAAAAAAAAAAAAAAAAAAAAAA C 1081.97 . AC=2;AF=0.667;AN=3;AS_AltDP=26;AS_QD=32.22;DP=75;ExcessHet=0.0000;FS=6.854;MQ=60.00;MQRankSum=0;QD=40.04;SOR=0.636;VarDP=28 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:90:31:0,90 1/1:2,26:28:42:.:1121,42,0:0,2,15,11 +chrX 3613854 . CAAAAAAA C 789.97 . AC=2;AF=0.667;AN=3;AS_AltDP=23;AS_QD=31.88;DP=84;ExcessHet=0.0000;FS=11.975;MQ=59.68;MQRankSum=-0.241;QD=31.88;SOR=1.170;VarDP=26 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:90:31:0,90 1/1:3,23:26:7:.:829,7,0:0,3,15,8 +chrX 3614083 . T C 2335 . AC=2;AF=0.667;AN=3;AS_AltDP=76;AS_QD=31.12;DP=110;ExcessHet=0.0000;FS=0.000;MQ=59.60;QD=31.12;SOR=0.984;VarDP=76 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:90:31:0,90 1/1:0,76:76:99:.:2365,226,0:0,0,33,43 +chrX 3614226 . A G 2097 . AC=2;AF=0.667;AN=3;AS_AltDP=67;AS_QD=31.75;DP=101;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.75;SOR=0.784;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:90:31:0,90 1/1:0,67:67:99:.:2127,200,0:0,0,32,35 +chrX 3614834 . T G 1508 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=32.72;DP=79;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.72;SOR=1.022;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:90:31:0,90 1/1:0,47:47:99:.:1538,141,0:0,0,27,20 +chrX 3615011 . A ATTT,T 914 . AC=2,0;AF=0.667,0.00;AN=3;AS_AltDP=22,4;AS_QD=33.04,28.22;DP=75;ExcessHet=0.0000;FS=0.000;MQ=58.36;QD=36.31;SOR=0.846;VarDP=26 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:90:31:0,90,90 1/1:0,22,4:26:21:.:944,86,0,521,21,763:0,0,14,12 +chrX 3615054 . T C 1032 . AC=2;AF=0.667;AN=3;AS_AltDP=33;AS_QD=32.18;DP=66;ExcessHet=0.0000;FS=0.000;MQ=59.10;QD=32.18;SOR=1.751;VarDP=33 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:90:31:0,90 1/1:0,33:33:99:.:1062,99,0:0,0,10,23 +chrX 3615403 . C T 1657 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=32.44;DP=86;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.44;SOR=0.770;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:90:31:0,90 1/1:0,52:52:99:.:1687,156,0:0,0,27,25 +chrX 3615921 . T C 1835 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=31.08;DP=91;ExcessHet=0.0000;FS=0.000;MQ=59.21;QD=31.08;SOR=0.831;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:90:31:0,90 1/1:0,60:60:99:.:1865,179,0:0,0,32,28 +chrX 3616417 . G A 1879 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=32.91;DP=91;ExcessHet=0.0000;FS=0.000;MQ=46.16;QD=32.91;SOR=0.914;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:90:31:0,90 1/1:0,58:58:99:.:1909,174,0:0,0,26,32 +chrX 3617161 . T TAC 2411.97 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=23.49;DP=95;ExcessHet=0.0000;FS=0.000;MQ=59.70;QD=42.26;SOR=0.836;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:90:31:0,90 1/1:0,58:58:99:.:2451,174,0:0,0,27,31 +chrX 3618068 . AG A 1013.97 . AC=2;AF=0.667;AN=3;AS_AltDP=34;AS_QD=30.97;DP=81;ExcessHet=0.0000;FS=0.000;MQ=59.14;QD=30.97;SOR=2.303;VarDP=34 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:90:31:0,90 1/1:0,34:34:99:.:1053,102,0:0,0,4,14 +chrX 3618470 . T TAAGAG 3783.97 . AC=3;AF=1.00;AN=3;AS_AltDP=86;AS_QD=29.57;DP=89;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.45;SOR=0.947;VarDP=86 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:1224,0:0,0,13,15 1/1:0,58:58:99:2599,175,0:0,0,25,33 +chrX 3618503 . G T 839 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=15.52;BaseQRankSum=0.452;DP=64;ExcessHet=0.0000;FS=1.071;MQ=60.00;MQRankSum=0;QD=15.52;ReadPosRankSum=-0.791;SOR=1.018;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:8:30:6:0,30 0/1:23,33:56:99:.:869,0,547:10,13,12,21 +chrX 3622486 . A G 1373 . AC=2;AF=0.667;AN=3;AS_AltDP=46;AS_QD=30.50;DP=57;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.50;SOR=0.874;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:8:30:6:0,30 1/1:0,46:46:99:.:1403,137,0:0,0,25,21 +chrX 3622833 . C A 1388 . AC=2;AF=0.667;AN=3;AS_AltDP=43;AS_QD=32.98;DP=51;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.98;SOR=1.055;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:8:30:6:0,30 1/1:0,43:43:99:.:1418,129,0:0,0,25,18 +chrX 3623094 . GA G 1111.97 . AC=2;AF=0.667;AN=3;AS_AltDP=37;AS_QD=31.11;DP=50;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.11;SOR=0.859;VarDP=37 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:8:30:6:0,30 1/1:0,37:37:99:.:1151,111,0:0,0,20,17 +chrX 3625046 . G A 655 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=12.92;BaseQRankSum=2.035;DP=64;ExcessHet=0.0000;FS=0.000;MQ=59.97;MQRankSum=-1.021;QD=12.92;ReadPosRankSum=-0.107;SOR=0.787;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:8:30:6:0,30 0/1:28,25:53:99:.:685,0,728:15,13,14,11 +chrX 3626308 . G A 714 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=14.88;BaseQRankSum=0.452;DP=59;ExcessHet=0.0000;FS=0.000;MQ=48.87;MQRankSum=-1.976;QD=14.88;ReadPosRankSum=-0.372;SOR=0.660;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:8:30:6:0,30 0/1:22,28:50:99:.:744,0,515:12,10,15,13 +chrX 3630285 . C T 3406 . AC=2;AF=0.667;AN=3;AS_AltDP=78;AS_QD=32.37;DP=86;ExcessHet=0.0000;FS=0.000;MQ=57.09;QD=44.05;SOR=0.798;VarDP=78 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:8:30:6:.:.:0,30 1|1:0,78:78:99:.:0|1:3630285_C_T:3436,235,0:3630285:0,0,37,41 +chrX 3630297 . T C 3362 . AC=2;AF=0.667;AN=3;AS_AltDP=77;AS_QD=30.41;DP=85;ExcessHet=0.0000;FS=0.000;MQ=56.61;QD=44.05;SOR=0.719;VarDP=77 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:8:30:6:.:.:0,30 1|1:0,77:77:99:.:0|1:3630285_C_T:3392,232,0:3630285:0,0,38,39 +chrX 3630347 . CA C 2297.97 . AC=2;AF=0.667;AN=3;AS_AltDP=64;AS_QD=31.58;DP=72;ExcessHet=0.0000;FS=0.000;MQ=52.51;QD=36.52;SOR=1.214;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:8:30:6:0,30 1/1:0,64:64:99:.:2337,192,0:0,0,25,39 +chrX 3630396 . C T 1990 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=33.67;DP=69;ExcessHet=0.0000;FS=0.000;MQ=51.45;QD=33.67;SOR=0.986;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:8:30:6:0,30 1/1:0,60:60:99:.:2020,180,0:0,0,26,34 +chrX 3630431 . G A 2479 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=31.28;DP=62;ExcessHet=0.0000;FS=0.000;MQ=54.13;QD=44.80;SOR=1.412;VarDP=56 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:8:30:6:.:.:0,30 1|1:0,56:56:99:.:0|1:3630431_G_A:2509,169,0:3630431:0,0,20,36 +chrX 3630432 . C A 2479 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=24.76;DP=64;ExcessHet=0.0000;FS=0.000;MQ=54.35;QD=44.80;SOR=1.412;VarDP=56 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:8:30:6:.:.:0,30 1|1:0,56:56:99:.:0|1:3630431_G_A:2509,169,0:3630431:0,0,20,36 +chrX 3630469 . G A 1772 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=34.00;DP=62;ExcessHet=0.0000;FS=0.000;MQ=55.44;QD=34.00;SOR=1.287;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:8:30:6:0,30 1/1:0,53:53:99:.:1802,159,0:0,0,20,33 +chrX 3630529 . C G 1737 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=33.34;DP=62;ExcessHet=0.0000;FS=0.000;MQ=59.96;QD=33.34;SOR=1.179;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:8:30:6:0,30 1/1:0,53:53:99:.:1767,159,0:0,0,21,32 +chrX 3630710 . G C 690 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=11.80;BaseQRankSum=3.308;DP=68;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=11.80;ReadPosRankSum=0.445;SOR=0.786;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:8:30:6:0,30 0/1:35,26:61:99:.:720,0,897:17,18,12,14 +chrX 3632463 . C CCCTGTCTGAATACAT 1216.97 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=27.30;BaseQRankSum=0.832;DP=54;ExcessHet=0.0000;FS=0.000;MQ=55.66;MQRankSum=-3.153;QD=27.30;ReadPosRankSum=1.418;SOR=0.760;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:8:30:6:0,30 0/1:15,31:46:99:.:1256,0,526:8,7,17,14 +chrX 3633414 . A C 657 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=14.02;BaseQRankSum=-0.583;DP=58;ExcessHet=0.0000;FS=2.547;MQ=60.00;MQRankSum=0;QD=14.02;ReadPosRankSum=-0.922;SOR=0.518;VarDP=49 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:8:30:6:.:.:0,30 0|1:30,19:49:99:.:0|1:3633414_A_C:687,0,1128:3633414:18,12,9,10 +chrX 3633424 . T C 790 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=16.08;BaseQRankSum=-0.947;DP=58;ExcessHet=0.0000;FS=7.859;MQ=60.00;MQRankSum=0;QD=16.08;ReadPosRankSum=-2.32;SOR=0.991;VarDP=51 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:8:30:6:.:.:0,30 0|1:28,23:51:99:.:0|1:3633414_A_C:820,0,1053:3633414:17,11,9,14 +chrX 3634025 . T G 810 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=14.24;BaseQRankSum=0.591;DP=66;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.24;ReadPosRankSum=-0.106;SOR=0.731;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:8:30:6:0,30 0/1:28,31:59:99:.:840,0,711:16,12,18,13 +chrX 3634773 . G C 732 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=12.29;BaseQRankSum=1.332;DP=69;ExcessHet=0.0000;FS=0.990;MQ=60.00;MQRankSum=0;QD=12.29;ReadPosRankSum=-0.832;SOR=0.491;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:8:30:6:0,30 0/1:32,30:62:99:.:762,0,771:12,20,13,17 +chrX 3634980 . A G 988 . AC=1;AF=0.333;AN=3;AS_AltDP=40;AS_QD=14.75;BaseQRankSum=-0.905;DP=78;ExcessHet=0.0000;FS=0.927;MQ=60.00;MQRankSum=0;QD=14.75;ReadPosRankSum=0.827;SOR=0.518;VarDP=69 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:8:30:6:0,30 0/1:29,40:69:99:.:1018,0,721:16,13,20,20 +chrX 3635875 . A G 784 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=11.46;BaseQRankSum=0.205;DP=79;ExcessHet=0.0000;FS=0.892;MQ=60.00;MQRankSum=0;QD=11.46;ReadPosRankSum=-0.603;SOR=0.814;VarDP=71 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:8:30:6:0,30 0/1:40,31:71:99:.:814,0,1092:18,22,13,18 +chrX 3637015 . G C 461 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=14.88;BaseQRankSum=-1.267;DP=42;ExcessHet=0.0000;FS=1.475;MQ=60.00;MQRankSum=0;QD=14.88;ReadPosRankSum=-1.05;SOR=0.330;VarDP=33 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:8:30:6:0,30 0/1:15,18:33:99:.:491,0,423:11,4,11,7 +chrX 3637261 . A G 791 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=15.20;BaseQRankSum=0.739;DP=64;ExcessHet=0.0000;FS=3.801;MQ=60.00;MQRankSum=0;QD=15.20;ReadPosRankSum=-0.636;SOR=0.330;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:8:30:6:0,30 0/1:24,30:54:99:.:821,0,604:15,9,15,15 +chrX 3637482 . C G 888 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=19.53;BaseQRankSum=1.584;DP=55;ExcessHet=0.0000;FS=4.125;MQ=60.00;MQRankSum=0;QD=19.53;ReadPosRankSum=0.586;SOR=0.907;VarDP=47 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:8:30:6:.:.:0,30 0|1:23,24:47:99:.:0|1:3637482_C_G:918,0,862:3637482:10,13,14,10 +chrX 3637491 . T C 979 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=19.78;BaseQRankSum=-0.095;DP=60;ExcessHet=0.0000;FS=5.785;MQ=60.00;MQRankSum=0;QD=19.78;ReadPosRankSum=-0.506;SOR=0.768;VarDP=51 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:8:30:6:.:.:0,30 0|1:23,28:51:99:.:0|1:3637482_C_G:1009,0,850:3637482:9,14,16,12 +chrX 3637613 . A G 623 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=11.46;BaseQRankSum=-1.855;DP=65;ExcessHet=0.0000;FS=7.558;MQ=60.00;MQRankSum=0;QD=11.46;ReadPosRankSum=0.176;SOR=0.190;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:8:30:6:0,30 0/1:28,29:57:99:.:653,0,699:8,20,14,15 +chrX 3637729 . G A 842 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=16.45;BaseQRankSum=-1.887;DP=59;ExcessHet=0.0000;FS=4.017;MQ=60.00;MQRankSum=0;QD=16.45;ReadPosRankSum=0.027;SOR=1.238;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:8:30:6:0,30 0/1:21,32:53:99:.:872,0,561:11,10,12,20 +chrX 3637763 . CT C 333.97 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=9.56;BaseQRankSum=-1.141;DP=60;ExcessHet=0.0000;FS=12.506;MQ=60.00;MQRankSum=0;QD=9.56;ReadPosRankSum=0.872;SOR=1.198;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:8:30:6:0,30 0/1:19,20:39:99:.:373,0,416:13,6,7,13 +chrX 3637824 . T C 691 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=16.39;BaseQRankSum=0.535;DP=51;ExcessHet=0.0000;FS=1.187;MQ=60.00;MQRankSum=0;QD=16.39;ReadPosRankSum=-0.294;SOR=0.452;VarDP=44 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:8:30:6:.:.:0,30 0|1:25,19:44:99:.:0|1:3637824_T_C:721,0,961:3637824:15,10,10,9 +chrX 3637843 . C T 736 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=15.63;BaseQRankSum=1.278;DP=57;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=15.63;ReadPosRankSum=-0.384;SOR=0.648;VarDP=49 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:8:30:6:.:.:0,30 0|1:28,21:49:99:.:0|1:3637824_T_C:766,0,1031:3637824:15,13,11,10 +chrX 3637894 . G A 370 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=7.69;BaseQRankSum=2.329;DP=60;ExcessHet=0.0000;FS=4.344;MQ=60.00;MQRankSum=0;QD=7.69;ReadPosRankSum=-0.705;SOR=1.139;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:8:30:6:0,30 0/1:36,16:52:99:.:400,0,964:16,20,10,6 +chrX 3638240 . T G 844 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=16.19;BaseQRankSum=0.03;DP=63;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=16.19;ReadPosRankSum=0.149;SOR=0.684;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:8:30:6:0,30 0/1:23,31:54:99:.:874,0,615:12,11,15,16 +chrX 3638284 . T TTC 904.97 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=20.98;BaseQRankSum=-0.476;DP=52;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=20.98;ReadPosRankSum=-0.663;SOR=0.735;VarDP=45 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:8:30:6:.:.:0,30 0|1:20,25:45:99:.:0|1:3638284_T_TTC:944,0,765:3638284:11,9,14,11 +chrX 3638293 . C T 1011 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=24.21;BaseQRankSum=0.598;DP=50;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=24.21;ReadPosRankSum=-1.591;SOR=0.593;VarDP=43 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:8:30:6:.:.:0,30 0|1:17,26:43:99:.:0|1:3638284_T_TTC:1041,0,636:3638284:9,8,13,13 +chrX 3638306 . G A 966 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=23.16;BaseQRankSum=1.409;DP=49;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=23.16;ReadPosRankSum=-1.154;SOR=0.770;VarDP=43 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:8:30:6:.:.:0,30 0|1:18,25:43:99:.:0|1:3638284_T_TTC:996,0,670:3638284:9,9,12,13 +chrX 3638521 . G A 782 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=17.28;BaseQRankSum=0.954;DP=55;ExcessHet=0.0000;FS=2.628;MQ=60.00;MQRankSum=0;QD=17.28;ReadPosRankSum=0.022;SOR=0.356;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:8:30:6:0,30 0/1:19,28:47:99:.:812,0,489:6,13,12,16 +chrX 3638866 . C G 353 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=12.35;BaseQRankSum=0.672;DP=42;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=12.35;ReadPosRankSum=1.246;SOR=0.836;VarDP=31 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:8:30:6:0,30 0/1:16,15:31:99:.:383,0,408:7,9,6,9 +chrX 3638951 . G A 309 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=13.04;BaseQRankSum=1.391;DP=44;ExcessHet=0.0000;FS=1.770;MQ=60.00;MQRankSum=0;QD=13.04;ReadPosRankSum=1.133;SOR=0.307;VarDP=26 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:8:30:6:0,30 0/1:14,12:26:99:.:339,0,374:3,11,4,8 +chrX 3639104 . T TGTGG 218.97 . AC=2;AF=0.667;AN=3;AS_AltDP=7;AS_QD=29.09;DP=37;ExcessHet=0.0000;FS=0.000;MQ=59.44;QD=36.86;SOR=4.174;VarDP=7 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:6:10:6:0,10 1/1:0,7:7:20:.:258,20,0:0,0,7,0 +chrX 3639235 . GGATGGATGAAGGGGTAGGTGGGTGGATGGATGGATGGATGGATGGATGAAGGGGTGGGGGGGTCGGGGGGTGGATGGATGAAGGGGTGGGGTGGTAGATGGATGAAGGGGTGGGGGTGGATGGATGAAGGGGTGGGGTGGTA G 298.97 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=28.17;DP=28;ExcessHet=0.0000;FS=0.000;MQ=56.42;MQRankSum=-0.223;QD=28.17;SOR=2.147;VarDP=12 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:2:35:1:0,35 0/1:1,11:12:14:.:338,0,14:1,0,10,1 +chrX 3639459 . G A 194 . AC=2;AF=0.667;AN=3;AS_AltDP=7;AS_QD=24.89;BaseQRankSum=1.915;DP=45;ExcessHet=0.0000;FS=0.000;MQ=59.05;MQRankSum=0;QD=24.89;ReadPosRankSum=-0.549;SOR=2.093;VarDP=9 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:26:90:26:0,90 1/1:2,7:9:7:.:224,7,0:2,0,7,0 +chrX 3639515 . A G 580 . AC=2;AF=0.667;AN=3;AS_AltDP=14;AS_QD=34.10;DP=43;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.57;SOR=5.421;VarDP=14 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:26:90:26:.:.:0,90 1|1:0,14:14:42:.:0|1:3639515_A_G:610,42,0:3639515:0,0,14,0 +chrX 3639519 . GGT G 570.97 . AC=2;AF=0.667;AN=3;AS_AltDP=14;AS_QD=30.10;DP=42;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.57;SOR=5.421;VarDP=14 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:26:90:26:.:.:0,90 1|1:0,14:14:42:.:0|1:3639515_A_G:610,42,0:3639515:0,0,14,0 +chrX 3639536 . C A 637 . AC=2;AF=0.667;AN=3;AS_AltDP=16;AS_QD=30.07;DP=44;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=41.69;SOR=5.670;VarDP=16 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:26:90:26:.:.:0,90 1|1:0,16:16:48:.:0|1:3639515_A_G:667,48,0:3639515:0,0,16,0 +chrX 3639674 . T C 689 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=13.57;BaseQRankSum=-0.763;DP=80;ExcessHet=0.0000;FS=5.585;MQ=60.00;MQRankSum=0;QD=13.57;ReadPosRankSum=0.214;SOR=1.061;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:26:90:26:0,90 0/1:25,28:53:99:.:719,0,660:14,11,11,17 +chrX 3640098 . G A 602 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=15.05;BaseQRankSum=-1.863;DP=68;ExcessHet=0.0000;FS=2.885;MQ=60.00;MQRankSum=0;QD=15.05;ReadPosRankSum=-0.013;SOR=0.307;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:26:90:26:0,90 0/1:19,23:42:99:.:632,0,534:5,14,9,14 +chrX 3643004 . CAA C 55.97 . AC=1;AF=0.333;AN=3;AS_AltDP=5;AS_QD=5.59;BaseQRankSum=0;DP=58;ExcessHet=0.0000;FS=20.434;MQ=59.48;MQRankSum=0.775;QD=5.59;ReadPosRankSum=-0.398;SOR=3.588;VarDP=17 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:26:90:26:0,90 0/1:12,5:17:95:.:95,0,239:3,9,5,0 +chrX 3643108 . A ACACCCC 571.97 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=17.46;BaseQRankSum=0.671;DP=66;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=17.46;ReadPosRankSum=2.104;SOR=0.871;VarDP=35 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:26:90:26:0,90 0/1:19,16:35:99:.:611,0,625:8,11,6,10 +chrX 3643555 . T C 673 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=11.72;BaseQRankSum=-1.817;DP=86;ExcessHet=0.0000;FS=0.988;MQ=60.00;MQRankSum=0;QD=11.72;ReadPosRankSum=-0.875;SOR=0.876;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:26:90:26:0,90 0/1:32,28:60:99:.:703,0,892:14,18,11,17 +chrX 3643870 . C T 686 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=19.89;BaseQRankSum=2.38;DP=65;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=19.89;ReadPosRankSum=1.158;SOR=0.716;VarDP=36 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:26:90:26:0,90 0/1:12,24:36:99:.:716,0,269:7,5,14,10 +chrX 3644215 . C T 488 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=16.19;BaseQRankSum=-1.442;DP=60;ExcessHet=0.0000;FS=0.000;MQ=59.97;MQRankSum=0;QD=16.19;ReadPosRankSum=0.672;SOR=0.507;VarDP=32 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:26:90:26:0,90 0/1:13,19:32:99:.:518,0,356:9,4,12,7 +chrX 3644234 . CAAA C 273.97 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=11.18;BaseQRankSum=0.292;DP=72;ExcessHet=0.0000;FS=5.969;MQ=59.79;MQRankSum=0;QD=11.18;ReadPosRankSum=0.38;SOR=1.770;VarDP=28 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:26:90:26:0,90 0/1:17,11:28:99:.:313,0,491:8,9,8,3 +chrX 3644400 . C CA,CAA 420.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=6,9;AS_QD=29.67,32.33;DP=59;ExcessHet=0.0000;FS=0.000;MQ=57.22;QD=30.67;SOR=1.911;VarDP=15 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:27:1:27:0,1,1 1/2:0,6,9:15:71:.:460,180,119,119,0,71:0,0,4,11 +chrX 3648606 . C CTG,CTGTG 1341.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=23,21;AS_QD=17.72,21.85;BaseQRankSum=-0.175;DP=91;ExcessHet=0.0000;FS=1.193;MQ=59.77;MQRankSum=-1.086;QD=24.23;ReadPosRankSum=-1.155;SOR=0.671;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:638,0,638:0,0,12,11 0/2:13,0,21:34:99:743,783,1299,0,516,453:6,7,11,10 +chrX 3650520 . C CA 750.97 . AC=3;AF=1.00;AN=3;AS_AltDP=41;AS_QD=19.27;DP=67;ExcessHet=0.0000;FS=0.000;MQ=58.48;QD=19.27;SOR=1.501;VarDP=41 GT:AD:DP:GQ:PL:SB 1:0,14:14:99:287,0:0,0,4,10 1/1:0,27:27:78:503,78,0:0,0,10,17 +chrX 3653624 . T C 402 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=10.29;BaseQRankSum=-0.509;DP=74;ExcessHet=0.0000;FS=1.218;MQ=58.94;MQRankSum=-0.137;QD=10.29;ReadPosRankSum=-1.821;SOR=0.430;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,387 0/1:23,19:42:99:.:432,0,610:14,9,10,9 +chrX 3653799 . ATATATATTATATACTATGTGATATATATAT A 54.97 . AC=1;AF=0.333;AN=3;AS_AltDP=5;AS_QD=3.36;BaseQRankSum=1.152;DP=75;ExcessHet=0.0000;FS=1.946;MQ=57.64;MQRankSum=-0.09;QD=3.36;ReadPosRankSum=-2.457;SOR=0.873;VarDP=28 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,387 0/1:23,5:28:94:.:94,0,713:10,13,3,2 +chrX 3653981 . T A 341 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=11.59;BaseQRankSum=-0.55;DP=64;ExcessHet=0.0000;FS=1.406;MQ=59.44;MQRankSum=0.888;QD=11.59;ReadPosRankSum=0.321;SOR=0.585;VarDP=32 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,387 0/1:17,15:32:99:.:371,0,447:7,10,8,7 +chrX 3654483 . G T 45 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=1.42;BaseQRankSum=-1.672;DP=86;ExcessHet=0.0000;FS=26.600;MQ=58.93;MQRankSum=-1.013;QD=1.42;ReadPosRankSum=0.682;SOR=1.231;VarDP=53 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:31:99:31:.:.:0,387 0|1:38,15:53:75:.:0|1:3654478_G_T:75,0,1014:3654478:7,31,10,5 +chrX 3659721 . TTTTTTTTG T 199.97 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=7.71;BaseQRankSum=1.053;DP=78;ExcessHet=0.0000;FS=0.000;MQ=59.10;MQRankSum=-0.046;QD=7.71;ReadPosRankSum=1.147;SOR=0.593;VarDP=31 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,387 0/1:16,15:31:99:.:239,0,546:9,7,8,7 +chrX 3659723 . T G,* 2303 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=36,23;AS_QD=28.67,0.00;BaseQRankSum=3.395;DP=68;ExcessHet=0.0000;FS=7.506;MQ=58.51;MQRankSum=-0.466;QD=38.25;ReadPosRankSum=-1.586;SOR=0.781;VarDP=61 GT:AD:DP:GQ:PL:SB 1:2,21,0:23:99:765,0,791:0,2,12,9 1/2:0,15,23:38:99:1568,838,872,577,0,493:0,0,23,15 +chrX 3659727 . TTG T 725.97 . AC=1;AF=1.00;AN=1;AS_AltDP=21;AS_QD=33.26;BaseQRankSum=-0.154;DP=23;ExcessHet=0.0000;FS=6.628;MQ=57.41;MQRankSum=-0.466;QD=33.26;ReadPosRankSum=-1.584;SOR=0.588;VarDP=23 GT:AD:DP:GQ:PL:SB 1:2,21:23:99:765,0:0,2,12,9 . +chrX 3659728 . TG *,T 1558.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=25,6;AS_QD=0.00,27.76;DP=65;ExcessHet=0.0000;FS=7.525;MQ=58.99;QD=51.55;SOR=0.801;VarDP=31 GT:AD:DP:GQ:PL:SB 1:2,21,0:23:99:765,0,791:0,2,12,9 1/2:0,25,6:31:18:1598,141,18,911,0,866:0,0,19,12 +chrX 3659810 . C T 823 . AC=2;AF=0.667;AN=3;AS_AltDP=29;AS_QD=15.51;BaseQRankSum=1.139;DP=57;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=15.51;ReadPosRankSum=-0.094;SOR=0.618;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,17:17:99:570,0:0,0,8,9 0/1:26,12:38:99:283,0,699:12,14,6,6 +chrX 3661071 . T A 1596 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=19.36;BaseQRankSum=-1.11;DP=89;ExcessHet=0.0000;FS=1.939;MQ=54.41;MQRankSum=-3.929;QD=19.36;ReadPosRankSum=2.321;SOR=0.909;VarDP=84 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:787,0:0,0,9,16 0/1:27,32:59:99:839,0,728:14,13,16,16 +chrX 3661438 . C T 1660 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=22.24;BaseQRankSum=0.017;DP=82;ExcessHet=0.0000;FS=7.748;MQ=60.00;MQRankSum=0;QD=22.24;ReadPosRankSum=-1.749;SOR=1.730;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:907,0:0,0,6,21 0/1:21,28:49:99:783,0,553:9,12,8,20 +chrX 3661515 . C G 1192 . AC=2;AF=0.667;AN=3;AS_AltDP=39;AS_QD=21.07;BaseQRankSum=-0.5;DP=59;ExcessHet=0.0000;FS=7.912;MQ=60.00;MQRankSum=0;QD=21.07;ReadPosRankSum=-0.102;SOR=0.464;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,20:20:99:695,0:0,0,8,12 0/1:19,19:38:99:527,0,521:13,6,10,9 +chrX 3661596 . G GA 767.97 . AC=2;AF=0.667;AN=3;AS_AltDP=36;AS_QD=15.82;BaseQRankSum=0.62;DP=65;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=15.82;ReadPosRankSum=0.241;SOR=0.582;VarDP=51 GT:AD:DP:GQ:PL:SB 1:0,15:15:99:371,0:0,0,6,9 0/1:15,21:36:99:436,0,280:8,7,12,9 +chrX 3661816 . A G 1537 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=18.65;BaseQRankSum=-0.459;DP=84;ExcessHet=0.0000;FS=1.843;MQ=60.00;MQRankSum=0;QD=18.65;ReadPosRankSum=-0.584;SOR=0.931;VarDP=84 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:818,0:0,0,13,13 0/1:30,28:58:99:749,0,828:15,15,17,11 +chrX 3662261 . A G 1766 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=19.96;BaseQRankSum=-0.925;DP=94;ExcessHet=0.0000;FS=4.445;MQ=60.00;MQRankSum=0;QD=19.96;ReadPosRankSum=1.669;SOR=0.355;VarDP=90 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:838,0:0,0,13,15 0/1:27,35:62:99:958,0,722:9,18,15,20 +chrX 3662424 . A G 1891 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=21.83;BaseQRankSum=-1.136;DP=94;ExcessHet=0.0000;FS=6.226;MQ=59.62;MQRankSum=-0.332;QD=21.83;ReadPosRankSum=-0.579;SOR=0.278;VarDP=88 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:1041,0:0,0,17,13 0/1:25,32:57:99:880,0,678:17,8,16,16 +chrX 3662462 . A G 1801 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=20.81;BaseQRankSum=0.856;DP=91;ExcessHet=0.0000;FS=1.885;MQ=59.43;MQRankSum=-1.029;QD=20.81;ReadPosRankSum=1.979;SOR=0.460;VarDP=88 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:1077,0:0,0,19,14 0/1:28,27:55:99:754,0,752:16,12,11,16 +chrX 3662690 . A G 756 . AC=2;AF=0.667;AN=3;AS_AltDP=29;AS_QD=16.72;BaseQRankSum=-0.126;DP=56;ExcessHet=0.0000;FS=0.000;MQ=59.36;MQRankSum=-0.972;QD=16.72;ReadPosRankSum=0.033;SOR=0.566;VarDP=47 GT:AD:DP:GQ:PL:SB 1:0,12:12:99:345,0:0,0,6,6 0/1:18,17:35:99:441,0,490:8,10,8,9 +chrX 3662694 . C CA 533.97 . AC=2;AF=0.667;AN=3;AS_AltDP=36;AS_QD=12.19;BaseQRankSum=0.294;DP=75;ExcessHet=0.0000;FS=5.361;MQ=58.05;MQRankSum=-1.612;QD=12.19;ReadPosRankSum=-2.35;SOR=1.489;VarDP=47 GT:AD:DP:GQ:PL:SB 1:0,18:18:99:321,0:0,0,7,11 0/1:11,18:29:99:252,0,136:6,5,5,13 +chrX 3662754 . C T 1371 . AC=2;AF=0.667;AN=3;AS_AltDP=46;AS_QD=21.55;BaseQRankSum=-2.178;DP=68;ExcessHet=0.0000;FS=3.891;MQ=60.00;MQRankSum=0;QD=21.55;ReadPosRankSum=0.111;SOR=0.299;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:988,0:0,0,15,14 0/1:19,17:36:99:413,0,553:13,6,10,7 +chrX 3662998 . T TAAA,TA 1007.97 . AC=2,0;AF=0.667,0.00;AN=3;AS_AltDP=30,1;AS_QD=23.80,5.53;BaseQRankSum=2.288;DP=74;ExcessHet=0.0000;FS=1.273;MQ=59.32;MQRankSum=-1.259;QD=23.27;ReadPosRankSum=-1.058;SOR=0.418;VarDP=45 GT:AD:DP:GQ:PL:SB 1:0,14,0:14:99:549,0,550:0,0,7,7 0/1:14,16,1:31:99:498,0,447,415,246,608:5,9,7,10 +chrX 3663030 . G A 1508 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=18.99;BaseQRankSum=-0.092;DP=83;ExcessHet=0.0000;FS=0.868;MQ=59.60;MQRankSum=-1.001;QD=18.99;ReadPosRankSum=0.476;SOR=0.712;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:804,0:0,0,13,12 0/1:29,27:56:99:734,0,818:15,14,12,15 +chrX 3663201 . A G 1525 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=23.21;BaseQRankSum=-0.818;DP=69;ExcessHet=0.0000;FS=2.414;MQ=59.78;MQRankSum=0;QD=23.21;ReadPosRankSum=-0.261;SOR=0.411;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:947,0:0,0,11,19 0/1:16,21:37:99:608,0,445:6,10,13,8 +chrX 3663382 . T C 1959 . AC=3;AF=1.00;AN=3;AS_AltDP=63;AS_QD=31.57;DP=65;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.57;SOR=1.179;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,19:19:99:630,0:0,0,15,4 1/1:0,44:44:99:1359,131,0:0,0,23,21 +chrX 3663468 . A AC 940.97 . AC=2;AF=0.667;AN=3;AS_AltDP=26;AS_QD=22.79;BaseQRankSum=-1.186;DP=62;ExcessHet=0.0000;FS=0.000;MQ=58.25;MQRankSum=-1.186;QD=22.79;ReadPosRankSum=0.659;SOR=0.793;VarDP=43 GT:AD:DP:GQ:PL:SB 1:0,11:11:99:474,0:0,0,4,5 0/1:17,15:32:99:506,0,606:8,8,5,5 +chrX 3663469 . A *,ACACACACAC,C,ACACACAC 1684 . AC=0,1,1,1;AF=0.00,0.333,0.333,0.333;AN=3;AS_AltDP=0,9,15,10;AS_QD=29.44,36.08,31.07,28.31;DP=61;ExcessHet=0.0000;FS=0.000;MQ=58.22;QD=50.41;SOR=0.811;VarDP=34 GT:AD:DP:GQ:PL:SB 2:0,0,9,0,0:9:99:474,539,0,507,507:0,0,4,5 3/4:0,0,0,15,10:25:99:1240,762,845,992,781,1166,566,478,530,587,676,412,647,0,851:0,0,12,13 +chrX 3663471 . A C 915 . AC=2;AF=0.667;AN=3;AS_AltDP=26;AS_QD=19.29;BaseQRankSum=-2.131;DP=60;ExcessHet=0.0000;FS=0.000;MQ=58.48;MQRankSum=-1.451;QD=19.29;ReadPosRankSum=1.235;SOR=0.724;VarDP=49 GT:AD:DP:GQ:PL:SB 1:0,11:11:99:474,0:0,0,4,5 0/1:23,15:38:99:471,0,794:12,11,5,5 +chrX 3664336 . G A 2833 . AC=3;AF=1.00;AN=3;AS_AltDP=87;AS_QD=32.91;DP=88;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.91;SOR=0.972;VarDP=87 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:893,0:0,0,12,15 1/1:0,60:60:99:1970,180,0:0,0,37,23 +chrX 3664662 . C T 2670 . AC=3;AF=1.00;AN=3;AS_AltDP=82;AS_QD=32.93;DP=85;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.93;SOR=0.793;VarDP=82 GT:AD:DP:GQ:PL:SB 1:0,34:34:99:1152,0:0,0,20,14 1/1:0,48:48:99:1548,143,0:0,0,23,25 +chrX 3665409 . C G 2768 . AC=3;AF=1.00;AN=3;AS_AltDP=85;AS_QD=32.92;DP=87;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.92;SOR=0.765;VarDP=85 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:923,0:0,0,14,14 1/1:0,57:57:99:1875,171,0:0,0,27,30 +chrX 3665727 . A G 2545 . AC=3;AF=1.00;AN=3;AS_AltDP=81;AS_QD=31.79;DP=84;ExcessHet=0.0000;FS=0.000;MQ=59.98;QD=31.79;SOR=1.264;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:814,0:0,0,12,14 1/1:0,55:55:99:1761,164,0:0,0,19,36 +chrX 3665921 . T TGGATGG 2303.97 . AC=3;AF=1.00;AN=3;AS_AltDP=53;AS_QD=36.93;DP=65;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.21;SOR=0.981;VarDP=53 GT:AD:DP:GQ:PL:SB 1:0,15:15:99:639,0:0,0,9,6 1/1:0,38:38:99:1704,114,0:0,0,21,17 +chrX 3665991 . A T 1931 . AC=3;AF=1.00;AN=3;AS_AltDP=60;AS_QD=32.68;DP=64;ExcessHet=0.0000;FS=0.000;MQ=59.93;QD=32.68;SOR=0.986;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,20:20:99:610,0:0,0,10,10 1/1:0,40:40:99:1351,120,0:0,0,24,16 +chrX 3666020 . T G 2334 . AC=3;AF=1.00;AN=3;AS_AltDP=74;AS_QD=31.52;BaseQRankSum=-0.427;DP=79;ExcessHet=0.0000;FS=3.310;MQ=59.61;MQRankSum=5.003;QD=31.52;ReadPosRankSum=-1.661;SOR=0.484;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:856,0:0,0,13,14 1/1:1,47:48:99:1508,118,0:0,1,27,20 +chrX 3666152 . ATT A 1036.97 . AC=3;AF=1.00;AN=3;AS_AltDP=36;AS_QD=29.08;BaseQRankSum=-0.715;DP=76;ExcessHet=0.0000;FS=0.000;MQ=59.49;MQRankSum=0;QD=29.08;ReadPosRankSum=0.158;SOR=0.269;VarDP=37 GT:AD:DP:GQ:PL:SB 1:0,15:15:99:480,0:0,0,11,4 1/1:1,21:22:45:596,45,0:1,0,8,13 +chrX 3666248 . A G 3078 . AC=3;AF=1.00;AN=3;AS_AltDP=72;AS_QD=30.45;DP=75;ExcessHet=0.0000;FS=0.000;MQ=59.34;QD=43.17;SOR=0.934;VarDP=72 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,32:32:99:.:.:1352,0:.:0,0,17,15 1|1:0,40:40:99:0|1:3666248_A_G:1756,120,0:3666248:0,0,15,25 +chrX 3666259 . G A 3010 . AC=3;AF=1.00;AN=3;AS_AltDP=69;AS_QD=33.93;DP=72;ExcessHet=0.0000;FS=0.000;MQ=59.31;QD=44.06;SOR=0.980;VarDP=69 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,30:30:99:.:.:1318,0:.:0,0,14,16 1|1:0,39:39:99:0|1:3666248_A_G:1722,117,0:3666248:0,0,16,23 +chrX 3666911 . T TAAA,TAAAA 2132.97 . AC=3,0;AF=1.00,0.00;AN=3;AS_AltDP=28,3;AS_QD=33.77,29.75;BaseQRankSum=-0.781;DP=86;ExcessHet=0.0000;FS=0.000;MQ=58.74;MQRankSum=0;QD=67.88;ReadPosRankSum=0.134;SOR=0.569;VarDP=32 GT:AD:DP:GQ:PL:SB 1:1,11,1:13:99:661,0,188:0,1,3,9 1/1:0,17,2:19:35:1511,132,0,431,35,300:0,0,8,11 +chrX 3667424 . T C 1895 . AC=3;AF=1.00;AN=3;AS_AltDP=60;AS_QD=32.08;DP=66;ExcessHet=0.0000;FS=0.000;MQ=48.02;QD=32.08;SOR=0.760;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,20:20:99:662,0:0,0,12,8 1/1:0,40:40:99:1263,119,0:0,0,17,23 +chrX 3668274 . A G 3115 . AC=3;AF=1.00;AN=3;AS_AltDP=100;AS_QD=31.14;BaseQRankSum=-0.577;DP=104;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=31.14;ReadPosRankSum=1.568;SOR=0.386;VarDP=101 GT:AD:DP:GQ:PL:SB 1:1,41:42:99:1255,0:1,0,25,16 1/1:0,59:59:99:1890,176,0:0,0,33,26 +chrX 3669316 . CTCCATCCA C 1802.97 . AC=2;AF=0.667;AN=3;AS_AltDP=42;AS_QD=31.21;DP=84;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.86;SOR=0.693;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:35:99:35:0,472 1/1:0,42:42:99:.:1842,127,0:0,0,21,21 +chrX 3672133 . C T 2631 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=28.65;DP=99;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=42.24;SOR=0.933;VarDP=63 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:35:99:35:.:.:0,472 1|1:0,63:63:99:.:0|1:3672133_C_T:2661,190,0:3672133:0,0,28,35 +chrX 3672155 . A G 3603 . AC=3;AF=1.00;AN=3;AS_AltDP=95;AS_QD=32.05;DP=97;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=38.24;SOR=1.053;VarDP=95 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,32:32:99:.:.:972,0:.:0,0,17,15 1|1:0,63:63:99:0|1:3672133_C_T:2661,190,0:3672133:0,0,23,40 +chrX 3672982 . C A 1815 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=32.37;BaseQRankSum=2.871;DP=91;ExcessHet=0.0000;FS=3.409;MQ=60.00;MQRankSum=0;QD=32.37;ReadPosRankSum=1.034;SOR=0.568;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,323 1/1:1,56:57:99:.:1845,161,0:1,0,25,31 +chrX 3674684 . G A 1563 . AC=2;AF=0.667;AN=3;AS_AltDP=49;AS_QD=32.51;DP=82;ExcessHet=0.0000;FS=0.000;MQ=59.11;QD=32.51;SOR=0.818;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,323 1/1:0,49:49:99:.:1593,147,0:0,0,23,26 +chrX 3674806 . C T 1920 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=34.21;DP=89;ExcessHet=0.0000;FS=0.000;MQ=58.61;QD=34.21;SOR=0.800;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,323 1/1:0,57:57:99:.:1950,171,0:0,0,27,30 +chrX 3675315 . C T 1367 . AC=2;AF=0.667;AN=3;AS_AltDP=43;AS_QD=31.75;BaseQRankSum=2.583;DP=76;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=31.75;ReadPosRankSum=0.315;SOR=0.330;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,323 1/1:1,43:44:99:.:1397,122,0:0,1,19,24 +chrX 3675618 . C G 1642 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=32.78;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.78;SOR=0.994;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,323 1/1:0,51:51:99:.:1672,152,0:0,0,22,29 +chrX 3675673 . TTCC T 1849.97 . AC=2;AF=0.667;AN=3;AS_AltDP=42;AS_QD=23.82;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.98;SOR=0.693;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,323 1/1:0,42:42:99:.:1889,127,0:0,0,21,21 +chrX 3677327 . C CT 331.97 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=21.82;DP=79;ExcessHet=0.0000;FS=0.000;MQ=59.42;QD=21.82;SOR=1.371;VarDP=17 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,17:17:99:.:371,0:0,0,11,6 0/0:.:53:37:52:0,37,1398 +chrX 3677536 . G A,GA 1684 . AC=2,0;AF=0.667,0.00;AN=3;AS_AltDP=59,0;AS_QD=29.05,30.74;DP=97;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=29.05;SOR=1.532;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,377,377 1/1:0,59,0:59:99:.:1714,183,0,1819,193,2289:0,0,20,39 +chrX 3678665 . C T 2163 . AC=2;AF=0.667;AN=3;AS_AltDP=65;AS_QD=33.74;DP=98;ExcessHet=0.0000;FS=0.000;MQ=59.85;QD=33.74;SOR=0.787;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,377 1/1:0,65:65:99:.:2193,195,0:0,0,34,31 +chrX 3682260 . C T 1583 . AC=2;AF=0.667;AN=3;AS_AltDP=49;AS_QD=32.26;BaseQRankSum=2.598;DP=82;ExcessHet=0.0000;FS=0.000;MQ=56.74;MQRankSum=-0.663;QD=32.26;ReadPosRankSum=-1.56;SOR=0.470;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,377 1/1:1,49:50:99:.:1613,140,0:0,1,19,30 +chrX 3689539 . C T 1286 . AC=1;AF=0.333;AN=3;AS_AltDP=39;AS_QD=33.74;DP=94;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.74;SOR=0.850;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,39:39:99:.:1316,0:0,0,21,18 0/0:.:54:54:54:0,54,986 +chrX 3689699 . T C 1374 . AC=2;AF=0.667;AN=3;AS_AltDP=44;AS_QD=31.91;DP=84;ExcessHet=0.0000;FS=0.000;MQ=59.59;QD=31.91;SOR=1.105;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:34:99:34:0,834 1/1:0,44:44:99:.:1404,132,0:0,0,18,26 +chrX 3689725 . C T 1986 . AC=2;AF=0.667;AN=3;AS_AltDP=46;AS_QD=27.67;DP=81;ExcessHet=0.0000;FS=0.000;MQ=59.03;QD=43.83;SOR=0.874;VarDP=46 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:34:99:34:.:.:0,834 1|1:0,46:46:99:.:0|1:3689725_C_T:2016,138,0:3689725:0,0,25,21 +chrX 3689729 . A G 1928 . AC=2;AF=0.667;AN=3;AS_AltDP=44;AS_QD=34.87;DP=79;ExcessHet=0.0000;FS=0.000;MQ=58.98;QD=44.50;SOR=0.883;VarDP=44 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:34:99:34:.:.:0,834 1|1:0,44:44:99:.:0|1:3689725_C_T:1958,132,0:3689725:0,0,24,20 +chrX 3689804 . T C 1311 . AC=2;AF=0.667;AN=3;AS_AltDP=49;AS_QD=16.35;BaseQRankSum=-1.434;DP=83;ExcessHet=0.0000;FS=1.818;MQ=59.25;MQRankSum=-1.853;QD=16.35;ReadPosRankSum=-0.646;SOR=0.583;VarDP=82 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:912,0:0,0,12,18 0/1:33,19:52:99:429,0,941:18,15,12,7 +chrX 3689870 . A G 3043 . AC=3;AF=1.00;AN=3;AS_AltDP=85;AS_QD=39.79;DP=86;ExcessHet=0.0000;FS=0.000;MQ=59.41;QD=36.15;SOR=0.716;VarDP=85 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:1161,0:0,0,12,15 1/1:0,58:58:99:1912,174,0:0,0,30,28 +chrX 3689894 . G A 1142 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=32.61;DP=82;ExcessHet=0.0000;FS=0.000;MQ=59.56;QD=41.86;SOR=1.382;VarDP=28 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,28:28:99:.:1172,0:0,0,10,18 0/0:.:54:99:54:0,120,1800 +chrX 3689931 . G C 726 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=14.00;BaseQRankSum=-1.383;DP=84;ExcessHet=0.0000;FS=0.000;MQ=59.51;MQRankSum=-1.216;QD=14.00;ReadPosRankSum=0.115;SOR=0.612;VarDP=54 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:30:99:30:.:.:0,182 0|1:33,21:54:99:.:0|1:3689931_G_C:756,0,1312:3689931:18,15,11,10 +chrX 3689934 . A G 726 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=14.00;BaseQRankSum=-0.688;DP=86;ExcessHet=0.0000;FS=0.000;MQ=59.53;MQRankSum=-1.216;QD=14.00;ReadPosRankSum=-0.036;SOR=0.612;VarDP=54 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:30:99:30:.:.:0,182 0|1:33,21:54:99:.:0|1:3689931_G_C:756,0,1312:3689931:18,15,11,10 +chrX 3690026 . T C 1802 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=29.08;DP=96;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=29.08;SOR=0.790;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,182 1/1:0,63:63:99:.:1832,186,0:0,0,30,33 +chrX 3690448 . T C 878 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=14.41;BaseQRankSum=0.277;DP=95;ExcessHet=0.0000;FS=7.320;MQ=60.00;MQRankSum=0;QD=14.41;ReadPosRankSum=-0.414;SOR=1.720;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,182 0/1:29,34:63:99:.:908,0,749:16,13,25,9 +chrX 3691178 . G A 1971 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=33.92;DP=91;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.92;SOR=0.950;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,182 1/1:0,59:59:99:.:2001,177,0:0,0,33,26 +chrX 3691430 . CCCGGGGGAGTGGGCTACATTACATTCTACCTTCAAGAAAAATAACAATTTTTCGA C 1354.97 . AC=2;AF=0.667;AN=3;AS_AltDP=31;AS_QD=30.71;DP=67;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.97;SOR=0.756;VarDP=31 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,182 1/1:0,31:31:97:.:1394,97,0:0,0,15,16 +chrX 3691498 . T C 1071 . AC=2;AF=0.667;AN=3;AS_AltDP=34;AS_QD=32.38;DP=65;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.38;SOR=0.811;VarDP=34 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,182 1/1:0,34:34:99:.:1101,101,0:0,0,16,18 +chrX 3691850 . A ATGAT 1343.97 . AC=2;AF=0.667;AN=3;AS_AltDP=41;AS_QD=32.93;BaseQRankSum=4.415;DP=82;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=32.93;ReadPosRankSum=-1.651;SOR=0.242;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,182 1/1:1,41:42:99:.:1383,101,0:1,0,21,20 +chrX 3692241 . T G 2418 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=27.92;DP=87;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=42.95;SOR=0.728;VarDP=57 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:30:99:30:.:.:0,182 1|1:0,57:57:99:.:0|1:3692241_T_G:2448,172,0:3692241:0,0,29,28 +chrX 3692263 . T C 2440 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=29.20;DP=90;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.33;SOR=0.960;VarDP=57 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:30:99:30:.:.:0,182 1|1:0,57:57:99:.:0|1:3692241_T_G:2470,172,0:3692241:0,0,32,25 +chrX 3693703 . T C 1617 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=31.08;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.08;SOR=0.892;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,182 1/1:0,53:53:99:.:1647,159,0:0,0,24,29 +chrX 3693872 . G T 260 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=9.35;BaseQRankSum=0.265;DP=64;ExcessHet=0.0000;FS=3.448;MQ=58.25;MQRankSum=-0.063;QD=9.35;ReadPosRankSum=-1.177;SOR=0.223;VarDP=31 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,182 0/1:19,12:31:99:.:290,0,513:13,6,6,6 +chrX 3694040 . A G 1434 . AC=2;AF=0.667;AN=3;AS_AltDP=44;AS_QD=33.27;DP=77;ExcessHet=0.0000;FS=0.000;MQ=59.90;QD=33.27;SOR=1.105;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,182 1/1:0,44:44:99:.:1464,132,0:0,0,26,18 +chrX 3694161 . T C 1681 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=30.55;DP=87;ExcessHet=0.0000;FS=0.000;MQ=59.46;QD=30.55;SOR=0.841;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,182 1/1:0,56:56:99:.:1711,167,0:0,0,26,30 +chrX 3694230 . T C 1494 . AC=2;AF=0.667;AN=3;AS_AltDP=45;AS_QD=33.87;DP=76;ExcessHet=0.0000;FS=0.000;MQ=59.33;QD=33.87;SOR=0.737;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,182 1/1:0,45:45:99:.:1524,135,0:0,0,23,22 +chrX 3694383 . A G 1928 . AC=2;AF=0.667;AN=3;AS_AltDP=64;AS_QD=30.59;DP=97;ExcessHet=0.0000;FS=0.000;MQ=59.76;QD=30.59;SOR=1.214;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,182 1/1:0,64:64:99:.:1958,191,0:0,0,25,39 +chrX 3694421 . T A 1990 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=32.58;DP=92;ExcessHet=0.0000;FS=0.000;MQ=59.61;QD=32.58;SOR=0.899;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,182 1/1:0,62:62:99:.:2020,185,0:0,0,34,28 +chrX 3694505 . T C 1484 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=32.21;DP=77;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.21;SOR=1.659;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,182 1/1:0,47:47:99:.:1514,141,0:0,0,32,15 +chrX 3694804 . T C 1463 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=31.77;DP=78;ExcessHet=0.0000;FS=0.000;MQ=59.46;QD=31.77;SOR=0.735;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,182 1/1:0,47:47:99:.:1493,141,0:0,0,24,23 +chrX 3695150 . T C 1811 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=32.30;DP=90;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.30;SOR=0.728;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,182 1/1:0,57:57:99:.:1841,170,0:0,0,28,29 +chrX 3695161 . C T 1786 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=33.02;DP=86;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.02;SOR=0.729;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,182 1/1:0,55:55:99:.:1816,165,0:0,0,28,27 +chrX 3695182 . T C 1692 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=33.12;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.12;SOR=0.853;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,182 1/1:0,52:52:99:.:1722,156,0:0,0,28,24 +chrX 3695532 . C A,T 1914 . AC=2,0;AF=0.667,0.00;AN=3;AS_AltDP=60,3;AS_QD=32.40,11.33;DP=96;ExcessHet=0.0000;FS=0.000;MQ=59.67;QD=30.86;SOR=0.933;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,182,182 1/1:0,60,3:63:99:.:1944,180,0,1911,147,1910:0,0,28,35 +chrX 3695715 . T C 1948 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=30.91;BaseQRankSum=2.791;DP=97;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=30.91;ReadPosRankSum=-1.544;SOR=0.758;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,182 1/1:2,62:64:99:.:1978,142,0:1,1,30,32 +chrX 3695850 . G C 1995 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=33.75;DP=93;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.75;SOR=0.831;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,182 1/1:0,60:60:99:.:2025,180,0:0,0,28,32 +chrX 3696045 . G A 1924 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=32.57;DP=92;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.57;SOR=0.906;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,182 1/1:0,60:60:99:.:1954,180,0:0,0,27,33 +chrX 3696586 . G C 1541 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=30.80;DP=82;ExcessHet=0.0000;FS=0.000;MQ=59.89;QD=30.80;SOR=0.732;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,182 1/1:0,51:51:99:.:1571,152,0:0,0,25,26 +chrX 3696746 . G A 2157 . AC=2;AF=0.667;AN=3;AS_AltDP=68;AS_QD=32.16;DP=102;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.16;SOR=1.022;VarDP=68 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,182 1/1:0,68:68:99:.:2187,204,0:0,0,39,29 +chrX 3696777 . C T 2073 . AC=2;AF=0.667;AN=3;AS_AltDP=67;AS_QD=31.39;DP=102;ExcessHet=0.0000;FS=0.000;MQ=59.82;QD=31.39;SOR=0.990;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,182 1/1:0,67:67:99:.:2103,199,0:0,0,38,29 +chrX 3697007 . A G 1585 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=31.67;DP=84;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.67;SOR=0.732;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,182 1/1:0,51:51:99:.:1615,153,0:0,0,25,26 +chrX 3697046 . GACAA G 1737.97 . AC=2;AF=0.667;AN=3;AS_AltDP=41;AS_QD=31.58;DP=74;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.34;SOR=0.741;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,182 1/1:0,41:41:99:.:1777,123,0:0,0,21,20 +chrX 3697266 . C T 1558 . AC=2;AF=0.667;AN=3;AS_AltDP=48;AS_QD=33.08;DP=79;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.08;SOR=1.067;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,182 1/1:0,48:48:99:.:1588,144,0:0,0,20,28 +chrX 3697720 . G T 1820 . AC=2;AF=0.667;AN=3;AS_AltDP=42;AS_QD=29.16;DP=72;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.05;SOR=1.556;VarDP=42 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:30:99:30:.:.:0,182 1|1:0,42:42:99:.:0|1:3697720_G_T:1850,126,0:3697720:0,0,28,14 +chrX 3697721 . T G 1820 . AC=2;AF=0.667;AN=3;AS_AltDP=42;AS_QD=32.73;DP=73;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.05;SOR=1.556;VarDP=42 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:30:99:30:.:.:0,182 1|1:0,42:42:99:.:0|1:3697720_G_T:1850,126,0:3697720:0,0,28,14 +chrX 3697755 . C T 2267 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=34.53;DP=84;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.34;SOR=1.402;VarDP=53 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:30:99:30:.:.:0,182 1|1:0,53:53:99:.:0|1:3697755_C_T:2297,159,0:3697755:0,0,34,19 +chrX 3697767 . C T 2257 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=30.86;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.98;SOR=1.136;VarDP=52 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:30:99:30:.:.:0,182 1|1:0,52:52:99:.:0|1:3697755_C_T:2287,157,0:3697755:0,0,31,21 +chrX 3699852 . A G 1571 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=30.79;DP=84;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.79;SOR=0.853;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,182 1/1:0,52:52:99:.:1601,155,0:0,0,28,24 +chrX 3700091 . A C 2114 . AC=2;AF=0.667;AN=3;AS_AltDP=67;AS_QD=32.00;DP=97;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.00;SOR=0.917;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,182 1/1:0,67:67:99:.:2144,201,0:0,0,37,30 +chrX 3700749 . T TTTGTTGTTG 774.97 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=17.70;BaseQRankSum=1.34;DP=87;ExcessHet=0.0000;FS=1.162;MQ=60.00;MQRankSum=0;QD=17.70;ReadPosRankSum=-0.748;SOR=0.435;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,182 0/1:24,22:46:99:.:814,0,920:9,15,10,12 +chrX 3701111 . TC T 954.97 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=21.61;BaseQRankSum=1.643;DP=81;ExcessHet=0.0000;FS=0.000;MQ=59.82;MQRankSum=0;QD=21.61;ReadPosRankSum=0.884;SOR=0.678;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,182 0/1:14,32:46:99:.:994,0,352:8,6,18,14 +chrX 3701275 . A ATTTT 1457.97 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=24.15;BaseQRankSum=0.928;DP=98;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=24.15;ReadPosRankSum=-0.68;SOR=0.798;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,182 0/1:24,38:62:99:.:1497,0,890:12,12,20,18 +chrX 3701483 . G A 1211 . AC=1;AF=0.333;AN=3;AS_AltDP=39;AS_QD=31.03;BaseQRankSum=-0.438;DP=104;ExcessHet=0.0000;FS=3.468;MQ=60.00;MQRankSum=0;QD=31.03;ReadPosRankSum=-0.866;SOR=0.633;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,39:40:99:.:1241,0:0,1,22,17 0/0:.:59:59:59:0,59,1052 +chrX 3701618 . G C 1275 . AC=1;AF=0.333;AN=3;AS_AltDP=41;AS_QD=31.83;DP=100;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.83;SOR=0.954;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,41:41:99:.:1305,0:0,0,18,23 0/0:.:59:59:59:0,59,1052 +chrX 3701976 . A G 853 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=31.54;DP=87;ExcessHet=0.0000;FS=0.000;MQ=59.90;QD=31.54;SOR=0.997;VarDP=28 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,28:28:99:.:883,0:0,0,16,12 0/0:.:59:59:59:0,59,1052 +chrX 3703668 . TG T 284.97 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=6.23;BaseQRankSum=-0.829;DP=83;ExcessHet=0.0000;FS=0.000;MQ=50.89;MQRankSum=-0.226;QD=6.23;ReadPosRankSum=-1.547;SOR=0.836;VarDP=52 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:28:99:28:.:.:0,575 0|1:36,16:52:99:.:0|1:3703668_TG_T:324,0,985:3703668:15,21,6,10 +chrX 3703669 . GT G,* 508.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=20,16;AS_QD=11.52,0.00;BaseQRankSum=-1.156;DP=68;ExcessHet=0.0000;FS=7.679;MQ=49.05;MQRankSum=-3.441;QD=11.66;ReadPosRankSum=0.078;SOR=1.692;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,8,0:8:99:.:.:174,0,175:.:0,0,2,6 1|2:11,12,16:39:32:1|0:3703668_TG_T:374,191,364,32,0,771:3703668:6,5,9,19 +chrX 3703869 . T C 795 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=15.28;BaseQRankSum=-0.968;DP=85;ExcessHet=0.0000;FS=2.273;MQ=59.39;MQRankSum=-1.498;QD=15.28;ReadPosRankSum=1.47;SOR=0.557;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,461 0/1:23,31:54:99:.:825,0,596:10,13,16,15 +chrX 3703892 . C T 786 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=15.69;BaseQRankSum=-0.432;DP=84;ExcessHet=0.0000;FS=7.963;MQ=60.00;MQRankSum=0;QD=15.69;ReadPosRankSum=1.139;SOR=0.915;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,461 0/1:22,30:52:99:.:816,0,568:8,14,18,12 +chrX 3704745 . C T 750 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=13.93;BaseQRankSum=-0.191;DP=89;ExcessHet=0.0000;FS=0.000;MQ=59.81;MQRankSum=-0.929;QD=13.93;ReadPosRankSum=-0.607;SOR=0.689;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,461 0/1:27,29:56:99:.:780,0,720:14,13,15,14 +chrX 3705691 . C CT 485.97 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=10.71;BaseQRankSum=2.527;DP=92;ExcessHet=0.0000;FS=2.504;MQ=59.65;MQRankSum=-1.315;QD=10.71;ReadPosRankSum=-0.742;SOR=0.352;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,461 0/1:23,26:49:99:.:525,0,452:8,15,12,14 +chrX 3706002 . TA T 172.97 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=6.24;BaseQRankSum=1.9;DP=71;ExcessHet=0.0000;FS=5.294;MQ=60.00;MQRankSum=0;QD=6.24;ReadPosRankSum=0.39;SOR=1.577;VarDP=34 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,461 0/1:21,13:34:99:.:212,0,398:10,11,9,4 +chrX 3706646 . G C 967 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=16.34;BaseQRankSum=0.775;DP=90;ExcessHet=0.0000;FS=2.182;MQ=60.00;MQRankSum=0;QD=16.34;ReadPosRankSum=1.248;SOR=0.740;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,461 0/1:24,37:61:99:.:997,0,556:11,13,20,17 +chrX 3707331 . C T 527 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=10.92;BaseQRankSum=-0.331;DP=82;ExcessHet=0.0000;FS=4.096;MQ=58.74;MQRankSum=-2.654;QD=10.92;ReadPosRankSum=0.97;SOR=0.264;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,461 0/1:29,22:51:99:.:557,0,786:19,10,11,11 +chrX 3707557 . T C 782 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=13.10;BaseQRankSum=-0.584;DP=94;ExcessHet=0.0000;FS=3.530;MQ=58.48;MQRankSum=-2.679;QD=13.10;ReadPosRankSum=1.839;SOR=0.365;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,461 0/1:30,32:62:99:.:812,0,793:10,20,14,18 +chrX 3709183 . C CA 152.97 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=7.68;BaseQRankSum=-0.268;DP=74;ExcessHet=0.0000;FS=3.624;MQ=59.30;MQRankSum=-1.221;QD=7.68;ReadPosRankSum=-0.85;SOR=1.516;VarDP=25 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,461 0/1:11,14:25:99:.:192,0,128:5,6,4,10 +chrX 3709373 . A G 925 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=16.19;BaseQRankSum=-0.627;DP=91;ExcessHet=0.0000;FS=3.670;MQ=60.00;MQRankSum=0;QD=16.19;ReadPosRankSum=2.13;SOR=0.653;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,461 0/1:24,35:59:99:.:955,0,598:10,14,19,16 +chrX 3710386 . T C 691 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=14.71;BaseQRankSum=-0.148;DP=81;ExcessHet=0.0000;FS=1.101;MQ=60.00;MQRankSum=0;QD=14.71;ReadPosRankSum=-1.76;SOR=0.623;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,461 0/1:22,27:49:99:.:721,0,553:12,10,13,14 +chrX 3710767 . C T 752 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=12.41;BaseQRankSum=2.698;DP=95;ExcessHet=0.0000;FS=3.414;MQ=59.89;MQRankSum=0.926;QD=12.41;ReadPosRankSum=1.709;SOR=0.382;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,461 0/1:35,28:63:99:.:782,0,947:14,21,14,14 +chrX 3710801 . G C 769 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=13.10;BaseQRankSum=-1.115;DP=92;ExcessHet=0.0000;FS=3.561;MQ=60.00;MQRankSum=0;QD=13.10;ReadPosRankSum=-0.354;SOR=1.241;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,461 0/1:31,30:61:99:.:799,0,864:15,16,11,19 +chrX 3711839 . T A 500 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=13.25;BaseQRankSum=2.98;DP=74;ExcessHet=0.0000;FS=4.442;MQ=60.00;MQRankSum=0;QD=13.25;ReadPosRankSum=-0.407;SOR=1.247;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,461 0/1:21,19:40:99:.:530,0,493:11,10,7,12 +chrX 3711877 . G C 461 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=10.23;BaseQRankSum=-0.284;DP=78;ExcessHet=0.0000;FS=4.047;MQ=60.00;MQRankSum=0;QD=10.23;ReadPosRankSum=-0.523;SOR=1.048;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,461 0/1:28,20:48:99:.:491,0,744:15,13,8,12 +chrX 3712725 . C T 561 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=10.55;BaseQRankSum=0.865;DP=89;ExcessHet=0.0000;FS=5.557;MQ=60.00;MQRankSum=0;QD=10.55;ReadPosRankSum=0.008;SOR=0.725;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,461 0/1:33,23:56:99:.:591,0,888:13,20,13,10 +chrX 3713126 . A G 955 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=14.70;BaseQRankSum=0.127;DP=98;ExcessHet=0.0000;FS=6.476;MQ=60.00;MQRankSum=0;QD=14.70;ReadPosRankSum=0.119;SOR=1.020;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,461 0/1:32,35:67:99:.:985,0,881:18,14,14,21 +chrX 3713482 . G A 660 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=11.90;BaseQRankSum=0.562;DP=88;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=11.90;ReadPosRankSum=-0.569;SOR=0.779;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,461 0/1:31,27:58:99:.:690,0,799:20,11,18,9 +chrX 3713579 . G C 763 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=15.86;BaseQRankSum=0.156;DP=81;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=15.86;ReadPosRankSum=1.888;SOR=0.727;VarDP=50 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:29:99:29:.:.:0,461 0|1:29,21:50:99:.:0|1:3713579_G_C:793,0,1144:3713579:14,15,11,10 +chrX 3713581 . G T 763 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=15.86;BaseQRankSum=-1.655;DP=80;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=15.86;ReadPosRankSum=1.597;SOR=0.727;VarDP=50 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:29:99:29:.:.:0,461 0|1:29,21:50:99:.:0|1:3713579_G_C:793,0,1144:3713579:14,15,11,10 +chrX 3713920 . C T 737 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=12.37;BaseQRankSum=-1.064;DP=94;ExcessHet=0.0000;FS=0.940;MQ=60.00;MQRankSum=0;QD=12.37;ReadPosRankSum=0.444;SOR=0.826;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,461 0/1:32,30:62:99:.:767,0,831:16,16,14,16 +chrX 3714927 . C T 580 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=11.51;BaseQRankSum=-0.327;DP=84;ExcessHet=0.0000;FS=3.855;MQ=60.00;MQRankSum=0;QD=11.51;ReadPosRankSum=-1.355;SOR=0.800;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,461 0/1:30,23:53:99:.:610,0,852:17,13,10,13 +chrX 3714990 . C T 1075 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=33.48;DP=91;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.48;SOR=1.022;VarDP=33 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,33:33:99:.:1105,0:0,0,19,14 0/0:.:58:52:58:0,52,1126 +chrX 3716754 . C T 875 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=18.47;BaseQRankSum=-0.078;DP=82;ExcessHet=0.0000;FS=2.587;MQ=59.85;MQRankSum=-0.686;QD=18.47;ReadPosRankSum=-1.418;SOR=0.585;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,323 0/1:17,32:49:99:.:905,0,414:7,10,17,15 +chrX 3717050 . ATG A 820.97 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=16.23;BaseQRankSum=2.04;DP=89;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=16.23;ReadPosRankSum=0.08;SOR=0.627;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,323 0/1:27,26:53:99:.:860,0,862:14,13,13,13 +chrX 3717498 . T C 1084 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=17.14;BaseQRankSum=-0.169;DP=98;ExcessHet=0.0000;FS=6.603;MQ=60.00;MQRankSum=0;QD=17.14;ReadPosRankSum=0.68;SOR=0.257;VarDP=65 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:31:99:31:.:.:0,323 0|1:35,30:65:99:.:0|1:3717498_T_C:1114,0,1277:3717498:12,23,15,15 +chrX 3717514 . G A 1061 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=17.89;BaseQRankSum=-0.372;DP=94;ExcessHet=0.0000;FS=3.548;MQ=60.00;MQRankSum=0;QD=17.89;ReadPosRankSum=1.399;SOR=0.364;VarDP=61 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:31:99:31:.:.:0,323 0|1:32,29:61:99:.:0|1:3717498_T_C:1091,0,1180:3717498:11,21,13,16 +chrX 3718284 . T C 841 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=14.52;BaseQRankSum=-1.296;DP=94;ExcessHet=0.0000;FS=0.990;MQ=60.00;MQRankSum=0;QD=14.52;ReadPosRankSum=1.03;SOR=0.709;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,323 0/1:28,32:60:99:.:871,0,772:15,13,15,17 +chrX 3719243 . G A 1057 . AC=1;AF=0.333;AN=3;AS_AltDP=41;AS_QD=17.82;BaseQRankSum=-1.416;DP=95;ExcessHet=0.0000;FS=1.091;MQ=60.00;MQRankSum=0;QD=17.82;ReadPosRankSum=-0.315;SOR=0.982;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,323 0/1:20,41:61:99:.:1087,0,463:12,8,27,14 +chrX 3719510 . A G 1007 . AC=1;AF=0.333;AN=3;AS_AltDP=39;AS_QD=17.00;BaseQRankSum=-2.863;DP=93;ExcessHet=0.0000;FS=17.975;MQ=60.00;MQRankSum=0;QD=17.00;ReadPosRankSum=-1.435;SOR=0.960;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,323 0/1:22,39:61:99:.:1037,0,582:16,6,15,24 +chrX 3720564 . C G 421 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=11.87;BaseQRankSum=-1.718;DP=71;ExcessHet=0.0000;FS=1.273;MQ=60.00;MQRankSum=0;QD=11.87;ReadPosRankSum=1.579;SOR=0.783;VarDP=38 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,323 0/1:20,18:38:99:.:451,0,561:11,9,8,10 +chrX 3720591 . T G 467 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=13.81;BaseQRankSum=-1.395;DP=69;ExcessHet=0.0000;FS=1.311;MQ=60.00;MQRankSum=0;QD=13.81;ReadPosRankSum=-0.016;SOR=0.772;VarDP=36 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,323 0/1:18,18:36:99:.:497,0,514:8,10,10,8 +chrX 3720821 . ATGTGGGAAAGCAAAAACG A 427.97 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=11.68;BaseQRankSum=1.414;DP=84;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=11.68;ReadPosRankSum=-0.798;SOR=0.910;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,323 0/1:27,13:40:99:.:467,0,1072:12,15,5,8 +chrX 3721007 . T C 625 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=12.36;BaseQRankSum=0.083;DP=84;ExcessHet=0.0000;FS=1.047;MQ=60.00;MQRankSum=0;QD=12.36;ReadPosRankSum=-0.133;SOR=0.507;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,323 0/1:27,26:53:99:.:655,0,710:15,12,13,13 +chrX 3721203 . T C 636 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=12.33;BaseQRankSum=-0.211;DP=86;ExcessHet=0.0000;FS=1.099;MQ=60.00;MQRankSum=0;QD=12.33;ReadPosRankSum=0.017;SOR=0.504;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,323 0/1:29,25:54:99:.:666,0,805:20,9,16,9 +chrX 3721452 . A G 464 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=9.15;BaseQRankSum=-0.572;DP=90;ExcessHet=0.0000;FS=2.398;MQ=60.00;MQRankSum=0;QD=9.15;ReadPosRankSum=-0.287;SOR=1.085;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,323 0/1:34,20:54:99:.:494,0,995:19,15,13,7 +chrX 3721628 . C A 968 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=13.67;BaseQRankSum=1.394;DP=107;ExcessHet=0.0000;FS=12.805;MQ=60.00;MQRankSum=0;QD=13.67;ReadPosRankSum=-1.507;SOR=0.132;VarDP=73 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,323 0/1:36,37:73:99:.:998,0,877:9,27,18,19 +chrX 3733950 . G A 791 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=14.66;BaseQRankSum=2.128;DP=89;ExcessHet=0.0000;FS=7.470;MQ=60.00;MQRankSum=0;QD=14.66;ReadPosRankSum=1.192;SOR=1.206;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,323 0/1:26,30:56:99:.:821,0,591:15,11,11,19 +chrX 3734142 . C CT 215.97 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=18.21;DP=60;ExcessHet=0.0000;FS=0.000;MQ=54.33;QD=18.21;SOR=1.329;VarDP=14 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,14:14:99:.:255,0:0,0,5,9 0/0:.:36:33:32:0,33,943 +chrX 3737945 . C T 694 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=11.14;BaseQRankSum=0.201;DP=98;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=11.14;ReadPosRankSum=0.027;SOR=0.643;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,164 0/1:37,28:65:99:.:724,0,1016:18,19,14,14 +chrX 3740467 . C A 256 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=6.98;BaseQRankSum=0.798;DP=82;ExcessHet=0.0000;FS=42.959;MQ=58.75;MQRankSum=1.848;QD=6.98;ReadPosRankSum=3.379;SOR=4.706;VarDP=41 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:31:99:31:.:.:0,164 0|1:20,21:41:99:.:1|0:3740464_T_G:286,0,462:3740464:13,7,1,20 +chrX 3740820 . C CAAA,CAAAAA 40.97 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=1,7;AS_QD=0.00,4.21;DP=77;ExcessHet=0.0000;FS=23.444;MQ=59.30;MQRankSum=0;QD=4.00;ReadPosRankSum=-3.599;SOR=2.777;VarDP=20 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,164,164 0/2:12,1,7:20:80:.:80,151,975,0,439,480:10,2,1,7 +chrX 3740843 . G GAAAA,A 2556 . AC=3,0;AF=1.00,0.00;AN=3;AS_AltDP=55,3;AS_QD=29.99,32.31;DP=70;ExcessHet=0.0000;FS=0.000;MQ=58.80;QD=44.59;SOR=1.199;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,18,0:18:99:792,0,792:0,0,5,13 1/1:0,37,3:40:76:1794,122,0,1288,76,1209:0,0,17,21 +chrX 3741163 . T C 1121 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=32.89;DP=90;ExcessHet=0.0000;FS=0.000;MQ=59.35;QD=32.89;SOR=2.368;VarDP=35 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,35:35:99:.:1151,0:0,0,27,8 0/0:.:57:37:54:0,37,1243 +chrX 3741825 . T C 535 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=11.77;BaseQRankSum=1.445;DP=82;ExcessHet=0.0000;FS=8.425;MQ=60.00;MQRankSum=0;QD=11.77;ReadPosRankSum=-0.603;SOR=1.808;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,287 0/1:27,21:48:99:.:565,0,724:13,14,15,6 +chrX 3743806 . A C,ATC 939 . AC=3,0;AF=1.00,0.00;AN=3;AS_AltDP=27,0;AS_QD=24.45,29.25;DP=48;ExcessHet=0.0000;FS=0.000;MQ=58.72;QD=35.89;SOR=1.230;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,11,0:11:99:347,0,407:0,0,2,5 1/1:0,16,0:16:49:622,49,0,638,63,787:0,0,6,8 +chrX 3743810 . A C 341 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=15.46;BaseQRankSum=0.287;DP=63;ExcessHet=0.0000;FS=0.000;MQ=59.40;MQRankSum=0;QD=15.46;ReadPosRankSum=0.534;SOR=0.791;VarDP=24 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:31:99:31:.:.:0,540 0|1:13,11:24:99:.:0|1:3743810_A_C:371,0,491:3743810:6,7,5,4 +chrX 3743836 . C A 271 . AC=1;AF=0.333;AN=3;AS_AltDP=10;AS_QD=11.15;BaseQRankSum=1.327;DP=69;ExcessHet=0.0000;FS=4.684;MQ=59.49;MQRankSum=0;QD=11.15;ReadPosRankSum=1.33;SOR=2.115;VarDP=27 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:31:99:31:.:.:0,540 0|1:17,10:27:99:.:1|0:3743810_A_C:301,0,580:3743810:8,9,1,5 +chrX 3746974 . T C 360 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=9.29;BaseQRankSum=-0.78;DP=78;ExcessHet=0.0000;FS=1.221;MQ=60.00;MQRankSum=0;QD=9.29;ReadPosRankSum=1.705;SOR=0.460;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,540 0/1:25,17:42:99:.:390,0,668:15,10,9,8 +chrX 3747400 . A G 506 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=11.40;BaseQRankSum=-1.665;DP=81;ExcessHet=0.0000;FS=0.000;MQ=59.65;MQRankSum=-1.023;QD=11.40;ReadPosRankSum=0.192;SOR=0.639;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,540 0/1:25,22:47:99:.:536,0,697:14,11,12,10 +chrX 3747423 . A AAAAAAAAG 996.97 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=19.19;BaseQRankSum=0.628;DP=87;ExcessHet=0.0000;FS=2.347;MQ=58.84;MQRankSum=-0.952;QD=19.19;ReadPosRankSum=-0.988;SOR=1.204;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,540 0/1:27,27:54:99:.:1036,0,876:14,13,17,10 +chrX 3747460 . GAAA G 1150.97 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=19.83;BaseQRankSum=-2.185;DP=94;ExcessHet=0.0000;FS=3.600;MQ=59.64;MQRankSum=-0.934;QD=19.83;ReadPosRankSum=-0.934;SOR=1.177;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,540 0/1:29,31:60:99:.:1190,0,1077:14,15,19,12 +chrX 3747595 . A G 841 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=13.00;BaseQRankSum=0.991;DP=100;ExcessHet=0.0000;FS=4.790;MQ=60.00;MQRankSum=0;QD=13.00;ReadPosRankSum=0.477;SOR=0.883;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,540 0/1:34,33:67:99:.:871,0,878:19,15,14,19 +chrX 3748329 . ATGTGTG A 666.97 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=13.84;BaseQRankSum=-1.463;DP=94;ExcessHet=0.0000;FS=0.000;MQ=59.80;MQRankSum=-1.205;QD=13.84;ReadPosRankSum=-0.691;SOR=0.757;VarDP=51 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:31:99:31:.:.:0,540 0|1:31,20:51:99:.:0|1:3748329_ATGTGTG_A:706,0,1170:3748329:18,13,12,8 +chrX 3748656 . A T 843 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=13.64;BaseQRankSum=-1.226;DP=97;ExcessHet=0.0000;FS=3.448;MQ=60.00;MQRankSum=0;QD=13.64;ReadPosRankSum=-1.514;SOR=1.007;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,540 0/1:30,34:64:99:.:873,0,801:16,14,14,20 +chrX 3748693 . C G 916 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=14.55;BaseQRankSum=0.244;DP=96;ExcessHet=0.0000;FS=0.938;MQ=60.00;MQRankSum=0;QD=14.55;ReadPosRankSum=-0.645;SOR=0.869;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,540 0/1:30,35:65:99:.:946,0,788:15,15,16,19 +chrX 3748930 . A G 1052 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=18.98;BaseQRankSum=-1.011;DP=89;ExcessHet=0.0000;FS=2.245;MQ=60.00;MQRankSum=0;QD=18.98;ReadPosRankSum=1.046;SOR=1.071;VarDP=57 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:31:99:31:.:.:0,540 0|1:28,29:57:99:.:0|1:3748930_A_G:1082,0,997:3748930:13,15,11,18 +chrX 3748954 . A G 1229 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=20.98;BaseQRankSum=-0.996;DP=91;ExcessHet=0.0000;FS=5.246;MQ=60.00;MQRankSum=0;QD=20.98;ReadPosRankSum=-0.629;SOR=1.216;VarDP=60 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:31:99:31:.:.:0,540 0|1:28,32:60:99:.:0|1:3748930_A_G:1259,0,1032:3748930:15,13,12,20 +chrX 3748970 . C CT 1117.97 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=21.04;BaseQRankSum=-1.192;DP=86;ExcessHet=0.0000;FS=3.728;MQ=60.00;MQRankSum=0;QD=21.04;ReadPosRankSum=-0.064;SOR=1.098;VarDP=55 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:31:99:31:.:.:0,540 0|1:25,30:55:99:.:0|1:3748930_A_G:1157,0,902:3748930:13,12,12,18 +chrX 3749325 . A G 2862 . AC=3;AF=1.00;AN=3;AS_AltDP=94;AS_QD=30.77;DP=95;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.77;SOR=0.736;VarDP=94 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:828,0:0,0,16,10 1/1:0,68:68:99:2064,202,0:0,0,30,38 +chrX 3749402 . C T 775 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=11.67;BaseQRankSum=0.935;DP=102;ExcessHet=0.0000;FS=2.002;MQ=60.00;MQRankSum=0;QD=11.67;ReadPosRankSum=0.109;SOR=0.815;VarDP=69 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,606 0/1:38,31:69:99:.:805,0,1013:18,20,17,14 +chrX 3749511 . A G 776 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=14.14;BaseQRankSum=-1.83;DP=89;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.14;ReadPosRankSum=1.138;SOR=0.756;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,606 0/1:26,31:57:99:.:806,0,701:13,13,15,16 +chrX 3750305 . C G 949 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=14.19;BaseQRankSum=-1.575;DP=101;ExcessHet=0.0000;FS=3.240;MQ=60.00;MQRankSum=0;QD=14.19;ReadPosRankSum=0.692;SOR=1.121;VarDP=69 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,606 0/1:32,37:69:99:.:979,0,885:16,16,22,15 +chrX 3750617 . T A 493 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=12.16;BaseQRankSum=0.937;DP=77;ExcessHet=0.0000;FS=9.350;MQ=45.50;MQRankSum=-5.786;QD=12.16;ReadPosRankSum=1.125;SOR=2.143;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,606 0/1:24,19:43:99:.:523,0,680:11,13,4,15 +chrX 3752043 . C T 608 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=13.57;BaseQRankSum=1.807;DP=82;ExcessHet=0.0000;FS=1.117;MQ=59.98;MQRankSum=-0.979;QD=13.57;ReadPosRankSum=-0.16;SOR=0.646;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,606 0/1:24,23:47:99:.:638,0,608:11,13,12,11 +chrX 3752391 . A T 1817 . AC=2;AF=0.667;AN=3;AS_AltDP=65;AS_QD=19.65;BaseQRankSum=0.602;DP=104;ExcessHet=0.0000;FS=7.312;MQ=60.00;MQRankSum=0;QD=19.65;ReadPosRankSum=1.156;SOR=0.806;VarDP=94 GT:AD:DP:GQ:PL:SB 1:1,35:36:99:1048,0:1,0,18,17 0/1:28,30:58:99:799,0,689:16,12,10,20 +chrX 3752604 . GA G 551.97 . AC=2;AF=0.667;AN=3;AS_AltDP=16;AS_QD=11.82;BaseQRankSum=0.546;DP=51;ExcessHet=0.0000;FS=2.602;MQ=57.28;MQRankSum=-3.413;QD=11.82;ReadPosRankSum=-1.586;SOR=1.112;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,7:7:99:.:.:315,0:.:0,0,2,5 0|1:34,9:43:99:0|1:3752604_GA_G:276,0,1401:3752604:14,20,3,6 +chrX 3752606 . T TCA 551.97 . AC=2;AF=0.667;AN=3;AS_AltDP=16;AS_QD=11.82;BaseQRankSum=0.738;DP=50;ExcessHet=0.0000;FS=2.602;MQ=57.23;MQRankSum=-3.413;QD=11.82;ReadPosRankSum=-1.651;SOR=1.112;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,7:7:99:.:.:315,0:.:0,0,2,5 0|1:34,9:43:99:0|1:3752604_GA_G:276,0,1401:3752604:14,20,3,6 +chrX 3752609 . GA G 590.97 . AC=2;AF=0.667;AN=3;AS_AltDP=17;AS_QD=12.12;BaseQRankSum=1.234;DP=52;ExcessHet=0.0000;FS=0.000;MQ=57.34;MQRankSum=-3.283;QD=12.12;ReadPosRankSum=-2.12;SOR=0.861;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,7:7:99:.:.:315,0:.:0,0,2,5 0|1:35,10:45:99:0|1:3752604_GA_G:315,0,1440:3752604:14,21,4,6 +chrX 3752617 . C T 603 . AC=2;AF=0.667;AN=3;AS_AltDP=17;AS_QD=12.41;BaseQRankSum=-0.449;DP=51;ExcessHet=0.0000;FS=1.142;MQ=57.28;MQRankSum=-3.236;QD=12.41;ReadPosRankSum=-1.864;SOR=0.489;VarDP=51 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,7:7:99:.:.:315,0:.:0,0,2,5 0|1:34,10:44:99:0|1:3752604_GA_G:318,0,1398:3752604:14,20,6,4 +chrX 3752623 . G T 780 . AC=2;AF=0.667;AN=3;AS_AltDP=21;AS_QD=15.58;BaseQRankSum=0.236;DP=52;ExcessHet=0.0000;FS=0.000;MQ=57.34;MQRankSum=-2.608;QD=15.58;ReadPosRankSum=-3.228;SOR=0.602;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,7:7:99:.:.:315,0:.:0,0,2,5 0|1:31,14:45:99:0|1:3752604_GA_G:495,0,1260:3752604:14,17,8,6 +chrX 3752627 . A T 732 . AC=2;AF=0.667;AN=3;AS_AltDP=20;AS_QD=14.94;BaseQRankSum=-0.497;DP=51;ExcessHet=0.0000;FS=2.422;MQ=57.28;MQRankSum=-2.518;QD=14.94;ReadPosRankSum=-3.165;SOR=0.758;VarDP=51 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,5:5:99:.:.:225,0:.:0,0,2,3 0|1:31,15:46:99:0|1:3752604_GA_G:537,0,1257:3752604:14,17,9,6 +chrX 3752634 . T C 822 . AC=2;AF=0.667;AN=3;AS_AltDP=22;AS_QD=16.71;BaseQRankSum=0.14;DP=51;ExcessHet=0.0000;FS=2.418;MQ=58.11;MQRankSum=-2.286;QD=16.71;ReadPosRankSum=-3.674;SOR=1.043;VarDP=51 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,5:5:99:.:.:225,0:.:0,0,3,2 0|1:29,17:46:99:0|1:3752604_GA_G:627,0,1167:3752604:14,15,10,7 +chrX 3752637 . C T 783 . AC=2;AF=0.667;AN=3;AS_AltDP=21;AS_QD=16.59;BaseQRankSum=1.794;DP=49;ExcessHet=0.0000;FS=2.498;MQ=58.52;MQRankSum=-1.859;QD=16.59;ReadPosRankSum=-3.283;SOR=1.230;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,5:5:99:.:.:225,0:.:0,0,3,2 0|1:28,16:44:99:0|1:3752604_GA_G:588,0,1128:3752604:14,14,10,6 +chrX 3752645 . C T 822 . AC=2;AF=0.667;AN=3;AS_AltDP=22;AS_QD=16.71;BaseQRankSum=1.762;DP=51;ExcessHet=0.0000;FS=4.035;MQ=58.58;MQRankSum=-1.835;QD=16.71;ReadPosRankSum=-2.1;SOR=1.297;VarDP=51 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,5:5:99:.:.:225,0:.:0,0,3,2 0|1:29,17:46:99:0|1:3752604_GA_G:627,0,1167:3752604:14,15,11,6 +chrX 3752653 . A G 864 . AC=2;AF=0.667;AN=3;AS_AltDP=23;AS_QD=17.19;BaseQRankSum=0.862;DP=52;ExcessHet=0.0000;FS=3.951;MQ=58.61;MQRankSum=-1.783;QD=17.19;ReadPosRankSum=-1.912;SOR=1.329;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,5:5:99:.:.:225,0:.:0,0,3,2 0|1:29,18:47:99:0|1:3752604_GA_G:669,0,1164:3752604:15,14,12,6 +chrX 3752661 . A G 996 . AC=2;AF=0.667;AN=3;AS_AltDP=26;AS_QD=19.00;BaseQRankSum=-0.196;DP=54;ExcessHet=0.0000;FS=7.543;MQ=59.37;MQRankSum=-1.661;QD=19.00;ReadPosRankSum=-1.194;SOR=1.697;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,6:6:99:.:.:270,0:.:0,0,4,2 0|1:28,20:48:99:0|1:3752604_GA_G:756,0,1116:3752604:14,14,14,6 +chrX 3752664 . T C 999 . AC=2;AF=0.667;AN=3;AS_AltDP=26;AS_QD=19.06;BaseQRankSum=-0.938;DP=54;ExcessHet=0.0000;FS=12.835;MQ=60.00;MQRankSum=0;QD=19.06;ReadPosRankSum=-0.44;SOR=2.303;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,7:7:99:.:.:315,0:.:0,0,5,2 0|1:28,19:47:99:0|1:3752604_GA_G:714,0,1119:3752604:14,14,15,4 +chrX 3752665 . T G 993 . AC=2;AF=0.667;AN=3;AS_AltDP=26;AS_QD=18.27;BaseQRankSum=-1.628;DP=56;ExcessHet=0.0000;FS=15.373;MQ=60.00;MQRankSum=0;QD=18.27;ReadPosRankSum=-0.592;SOR=2.280;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,7:7:99:.:.:315,0:.:0,0,5,2 0|1:30,19:49:99:0|1:3752604_GA_G:708,0,1203:3752604:14,16,15,4 +chrX 3752670 . A G 1131 . AC=2;AF=0.667;AN=3;AS_AltDP=29;AS_QD=20.37;BaseQRankSum=-0.11;DP=57;ExcessHet=0.0000;FS=18.070;MQ=60.00;MQRankSum=0;QD=20.37;ReadPosRankSum=0.043;SOR=2.180;VarDP=57 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,9:9:99:.:.:405,0:.:0,0,6,3 0|1:28,20:48:99:0|1:3752604_GA_G:756,0,1116:3752604:12,16,16,4 +chrX 3752671 . G A 1131 . AC=2;AF=0.667;AN=3;AS_AltDP=29;AS_QD=20.37;BaseQRankSum=2.291;DP=57;ExcessHet=0.0000;FS=18.070;MQ=60.00;MQRankSum=0;QD=20.37;ReadPosRankSum=-0.033;SOR=2.180;VarDP=57 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,9:9:99:.:.:405,0:.:0,0,6,3 0|1:28,20:48:99:0|1:3752604_GA_G:756,0,1116:3752604:12,16,16,4 +chrX 3752672 . T C 1134 . AC=2;AF=0.667;AN=3;AS_AltDP=29;AS_QD=20.79;BaseQRankSum=1.691;DP=56;ExcessHet=0.0000;FS=15.572;MQ=60.00;MQRankSum=0;QD=20.79;ReadPosRankSum=0.1;SOR=2.189;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,9:9:99:.:.:405,0:.:0,0,6,3 0|1:27,20:47:99:0|1:3752604_GA_G:759,0,1074:3752604:12,15,16,4 +chrX 3752677 . T C 1171 . AC=2;AF=0.667;AN=3;AS_AltDP=30;AS_QD=21.45;BaseQRankSum=1.13;DP=63;ExcessHet=0.0000;FS=15.647;MQ=60.00;MQRankSum=0;QD=21.45;ReadPosRankSum=0.721;SOR=2.277;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,10:10:99:.:.:439,0:.:0,0,7,3 0|1:26,20:46:99:0|1:3752604_GA_G:762,0,1020:3752604:12,14,16,4 +chrX 3752762 . C CT 438.97 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=20.78;BaseQRankSum=-0.479;DP=97;ExcessHet=0.0000;FS=3.203;MQ=60.00;MQRankSum=0;QD=20.78;ReadPosRankSum=-0.218;SOR=0.263;VarDP=23 GT:AD:DP:GQ:MIN_DP:PL:SB 1:2,21:23:99:.:478,0:2,0,10,11 0/0:.:59:53:59:0,53,1414 +chrX 3753097 . A G 1741 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=16.87;BaseQRankSum=1.515;DP=112;ExcessHet=0.0000;FS=0.736;MQ=60.00;MQRankSum=0;QD=16.87;ReadPosRankSum=-0.798;SOR=0.790;VarDP=105 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:852,0:0,0,13,15 0/1:42,35:77:99:919,0,1063:21,21,17,18 +chrX 3754431 . C T 597 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=29.86;BaseQRankSum=-0.272;DP=84;ExcessHet=0.0000;FS=0.000;MQ=41.93;MQRankSum=-2.288;QD=29.86;ReadPosRankSum=0.413;SOR=0.765;VarDP=21 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,20:21:99:.:627,0:1,0,14,6 0/0:.:59:99:59:0,106,1424 +chrX 3754548 . G A 1692 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=20.75;BaseQRankSum=1.54;DP=86;ExcessHet=0.0000;FS=4.789;MQ=56.46;MQRankSum=-2.044;QD=20.75;ReadPosRankSum=1.834;SOR=1.033;VarDP=83 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:868,0:0,0,12,16 0/1:24,31:55:99:854,0,575:13,11,12,19 +chrX 3755793 . CTTT C 244.97 . AC=1;AF=0.333;AN=3;AS_AltDP=9;AS_QD=13.52;BaseQRankSum=-0.529;DP=71;ExcessHet=0.0000;FS=4.123;MQ=59.21;MQRankSum=1.634;QD=13.52;ReadPosRankSum=-0.368;SOR=1.288;VarDP=21 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,135 0/1:12,9:21:99:.:284,0,353:7,5,3,6 +chrX 3755926 . G A 714 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=14.04;BaseQRankSum=2.3;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.04;ReadPosRankSum=-0.57;SOR=0.627;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,135 0/1:27,26:53:99:.:744,0,714:13,14,13,13 +chrX 3757517 . C CA 499.97 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=13.48;BaseQRankSum=0.258;DP=89;ExcessHet=0.0000;FS=2.835;MQ=60.00;MQRankSum=0;QD=13.48;ReadPosRankSum=-2.142;SOR=1.220;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,135 0/1:14,26:40:99:.:539,0,249:7,7,10,16 +chrX 3757670 . A G 799 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=14.05;BaseQRankSum=0.298;DP=90;ExcessHet=0.0000;FS=0.990;MQ=60.00;MQRankSum=0;QD=14.05;ReadPosRankSum=-0.798;SOR=0.639;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,135 0/1:28,31:59:99:.:829,0,710:15,13,15,16 +chrX 3758685 . CTCCATCCA C 772.97 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=23.88;BaseQRankSum=-1.616;DP=68;ExcessHet=0.0000;FS=8.039;MQ=60.00;MQRankSum=0;QD=23.88;ReadPosRankSum=-1.809;SOR=0.982;VarDP=34 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,135 0/1:13,21:34:99:.:812,0,482:9,4,8,13 +chrX 3759015 . T TCATC 163.97 . AC=1;AF=0.333;AN=3;AS_AltDP=8;AS_QD=20.30;BaseQRankSum=1.701;DP=52;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=20.30;ReadPosRankSum=-0.37;SOR=0.223;VarDP=10 GT:AD:DP:GQ:MIN_DP:PL:SB 1:2,8:10:99:.:203,0:2,0,5,3 0/0:.:43:23:34:0,23,793 +chrX 3760275 . A G 658 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=12.07;BaseQRankSum=1.263;DP=91;ExcessHet=0.0000;FS=2.226;MQ=60.00;MQRankSum=0;QD=12.07;ReadPosRankSum=0.737;SOR=0.706;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,237 0/1:31,26:57:99:.:688,0,827:17,14,12,14 +chrX 3760371 . T A 669 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=14.87;BaseQRankSum=0.465;DP=81;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.87;ReadPosRankSum=1.509;SOR=0.581;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,237 0/1:21,26:47:99:.:699,0,509:9,12,12,14 +chrX 3760615 . A T 746 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=16.51;BaseQRankSum=-0.254;DP=81;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=16.51;ReadPosRankSum=-0.183;SOR=0.826;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,237 0/1:20,27:47:99:.:776,0,529:8,12,10,17 +chrX 3760697 . C T 765 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=13.71;BaseQRankSum=0.814;DP=90;ExcessHet=0.0000;FS=7.495;MQ=60.00;MQRankSum=0;QD=13.71;ReadPosRankSum=-0.986;SOR=0.869;VarDP=58 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:30:99:30:.:.:0,237 0|1:36,22:58:99:.:0|1:3760697_C_T:795,0,1445:3760697:22,14,9,13 +chrX 3760700 . A G 765 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=13.71;BaseQRankSum=0.878;DP=91;ExcessHet=0.0000;FS=7.495;MQ=60.00;MQRankSum=0;QD=13.71;ReadPosRankSum=-0.325;SOR=0.869;VarDP=58 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:30:99:30:.:.:0,237 0|1:36,22:58:99:.:0|1:3760697_C_T:795,0,1445:3760697:22,14,9,13 +chrX 3761026 . T C 810 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=13.13;BaseQRankSum=-1.633;DP=96;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.13;ReadPosRankSum=0.255;SOR=0.821;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,237 0/1:32,32:64:99:.:840,0,889:14,18,13,19 +chrX 3761100 . A G 832 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=15.96;BaseQRankSum=-0.383;DP=85;ExcessHet=0.0000;FS=13.281;MQ=60.00;MQRankSum=0;QD=15.96;ReadPosRankSum=0.53;SOR=2.390;VarDP=54 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:30:99:30:.:.:0,237 0|1:31,23:54:99:.:0|1:3761100_A_G:862,0,1172:3761100:16,15,5,18 +chrX 3761110 . A G 884 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=16.62;BaseQRankSum=0.059;DP=86;ExcessHet=0.0000;FS=13.085;MQ=60.00;MQRankSum=0;QD=16.62;ReadPosRankSum=0.187;SOR=2.383;VarDP=55 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:30:99:30:.:.:0,237 0|1:31,24:55:99:.:0|1:3761100_A_G:914,0,1208:3761100:15,16,5,19 +chrX 3761128 . C A 710 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=13.96;BaseQRankSum=-0.834;DP=84;ExcessHet=0.0000;FS=13.365;MQ=60.00;MQRankSum=0;QD=13.96;ReadPosRankSum=1.311;SOR=2.426;VarDP=53 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:30:99:30:.:.:0,237 0|1:33,20:53:99:.:0|1:3761100_A_G:740,0,1262:3761100:16,17,4,16 +chrX 3761156 . T TGATGGATGGATGGATG 501.97 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=13.53;BaseQRankSum=-1.642;DP=85;ExcessHet=0.0000;FS=9.829;MQ=59.57;MQRankSum=-1.239;QD=13.53;ReadPosRankSum=-0.168;SOR=1.856;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,237 0/1:25,15:40:99:.:541,0,976:14,11,4,11 +chrX 3761212 . T C 555 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=14.27;BaseQRankSum=0.533;DP=72;ExcessHet=0.0000;FS=2.846;MQ=60.00;MQRankSum=0;QD=14.27;ReadPosRankSum=-1.992;SOR=1.270;VarDP=41 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:30:99:30:.:.:0,237 0|1:25,16:41:99:.:0|1:3761212_T_C:585,0,969:3761212:11,14,5,11 +chrX 3761213 . G A 555 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=14.27;BaseQRankSum=1.951;DP=72;ExcessHet=0.0000;FS=2.846;MQ=60.00;MQRankSum=0;QD=14.27;ReadPosRankSum=-1.898;SOR=1.270;VarDP=41 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:30:99:30:.:.:0,237 0|1:25,16:41:99:.:0|1:3761212_T_C:585,0,969:3761212:11,14,5,11 +chrX 3761284 . T C 470 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=12.50;BaseQRankSum=-2.304;DP=71;ExcessHet=0.0000;FS=2.780;MQ=60.00;MQRankSum=0;QD=12.50;ReadPosRankSum=-0.61;SOR=0.812;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,237 0/1:19,21:40:99:.:500,0,516:11,8,9,12 +chrX 3761340 . T A 445 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=11.59;BaseQRankSum=-0.308;DP=75;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=11.59;ReadPosRankSum=-0.026;SOR=0.624;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,237 0/1:22,19:41:99:.:475,0,541:12,10,10,9 +chrX 3761543 . G A 657 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=14.02;BaseQRankSum=1.429;DP=80;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.02;ReadPosRankSum=0.28;SOR=0.631;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,237 0/1:25,24:49:99:.:687,0,701:15,10,14,10 +chrX 3761769 . G T 1223 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=22.78;BaseQRankSum=0.402;DP=86;ExcessHet=0.0000;FS=2.310;MQ=59.70;MQRankSum=-1.184;QD=22.78;ReadPosRankSum=-0.621;SOR=0.633;VarDP=55 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:30:99:30:.:.:0,237 0|1:23,32:55:99:.:0|1:3761769_G_T:1253,0,869:3761769:10,13,17,15 +chrX 3761778 . A T 1210 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=22.14;BaseQRankSum=0.144;DP=88;ExcessHet=0.0000;FS=3.662;MQ=59.25;MQRankSum=-1.21;QD=22.14;ReadPosRankSum=-0.654;SOR=0.590;VarDP=56 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:30:99:30:.:.:0,237 0|1:24,32:56:99:.:0|1:3761769_G_T:1240,0,891:3761769:10,14,17,15 +chrX 3761959 . G A 1236 . AC=1;AF=0.333;AN=3;AS_AltDP=44;AS_QD=18.62;BaseQRankSum=1.717;DP=100;ExcessHet=0.0000;FS=0.960;MQ=60.00;MQRankSum=0;QD=18.62;ReadPosRankSum=1.457;SOR=0.883;VarDP=68 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,237 0/1:24,44:68:99:.:1266,0,515:12,12,20,24 +chrX 3762173 . A C 690 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=13.58;BaseQRankSum=0.348;DP=86;ExcessHet=0.0000;FS=2.323;MQ=60.00;MQRankSum=0;QD=13.58;ReadPosRankSum=0.107;SOR=0.537;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,237 0/1:26,27:53:99:.:720,0,703:15,11,13,14 +chrX 3762411 . A G 899 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=16.59;BaseQRankSum=0.64;DP=90;ExcessHet=0.0000;FS=1.029;MQ=60.00;MQRankSum=0;QD=16.59;ReadPosRankSum=0.325;SOR=0.526;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,237 0/1:23,33:56:99:.:929,0,581:10,13,16,17 +chrX 3762560 . G A 713 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=14.02;BaseQRankSum=0.858;DP=87;ExcessHet=0.0000;FS=0.000;MQ=59.97;MQRankSum=0;QD=14.02;ReadPosRankSum=0.507;SOR=0.610;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,237 0/1:26,27:53:99:.:743,0,705:10,16,11,16 +chrX 3762643 . C CATA 1153.97 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=22.94;BaseQRankSum=1.276;DP=86;ExcessHet=0.0000;FS=7.963;MQ=59.96;MQRankSum=-0.817;QD=22.94;ReadPosRankSum=-0.899;SOR=0.915;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,237 0/1:22,30:52:99:.:1193,0,833:14,8,12,18 +chrX 3762834 . T C 456 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=12.79;BaseQRankSum=0.018;DP=72;ExcessHet=0.0000;FS=1.289;MQ=60.00;MQRankSum=0;QD=12.79;ReadPosRankSum=1.577;SOR=1.158;VarDP=38 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,237 0/1:19,19:38:99:.:486,0,486:9,10,7,12 +chrX 3762975 . C T 713 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=15.81;BaseQRankSum=0.494;DP=79;ExcessHet=0.0000;FS=4.417;MQ=60.00;MQRankSum=0;QD=15.81;ReadPosRankSum=0.506;SOR=1.488;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,237 0/1:20,27:47:99:.:743,0,500:11,9,19,8 +chrX 3763024 . T G 739 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=13.26;BaseQRankSum=-2.518;DP=89;ExcessHet=0.0000;FS=3.717;MQ=60.00;MQRankSum=0;QD=13.26;ReadPosRankSum=0.039;SOR=1.300;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,237 0/1:27,31:58:99:.:769,0,715:14,13,20,11 +chrX 3763160 . G A 1161 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=22.90;BaseQRankSum=-1.423;DP=85;ExcessHet=0.0000;FS=4.070;MQ=60.00;MQRankSum=0;QD=22.90;ReadPosRankSum=0.338;SOR=0.283;VarDP=52 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:30:99:30:.:.:0,237 0|1:20,32:52:99:.:0|1:3763160_G_A:1191,0,733:3763160:7,13,16,16 +chrX 3763181 . T A 1333 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=22.72;BaseQRankSum=-0.998;DP=92;ExcessHet=0.0000;FS=1.032;MQ=60.00;MQRankSum=0;QD=22.72;ReadPosRankSum=-1.772;SOR=0.484;VarDP=60 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:30:99:30:.:.:0,237 0|1:22,38:60:99:.:0|1:3763160_G_A:1363,0,779:3763160:9,13,18,20 +chrX 3763329 . T C 539 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=10.35;BaseQRankSum=-0.149;DP=88;ExcessHet=0.0000;FS=3.920;MQ=60.00;MQRankSum=0;QD=10.35;ReadPosRankSum=0.352;SOR=0.299;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,237 0/1:33,22:55:99:.:569,0,942:21,12,11,11 +chrX 3763728 . G T 619 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=10.47;BaseQRankSum=2.564;DP=94;ExcessHet=0.0000;FS=0.977;MQ=60.00;MQRankSum=0;QD=10.47;ReadPosRankSum=1.431;SOR=0.859;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,237 0/1:38,24:62:99:.:649,0,1013:19,19,11,13 +chrX 3764350 . A T 474 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=13.26;BaseQRankSum=-1.294;DP=69;ExcessHet=0.0000;FS=1.273;MQ=60.00;MQRankSum=0;QD=13.26;ReadPosRankSum=0.234;SOR=0.957;VarDP=38 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,237 0/1:19,19:38:99:.:504,0,519:10,9,8,11 +chrX 3764500 . G T,GCATCCATCCATCCATCCATC,C 1014 . AC=0,1,0;AF=0.00,0.333,0.00;AN=3;AS_AltDP=0,23,0;AS_QD=0.00,22.21,18.46;BaseQRankSum=-0.749;DP=87;ExcessHet=0.0000;FS=2.509;MQ=60.00;MQRankSum=0;QD=22.21;ReadPosRankSum=-0.383;SOR=0.377;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,237,237,237 0/2:24,0,23,0:47:99:.:1044,1098,1837,0,674,918,601,1405,970,1645:15,9,12,11 +chrX 3764566 . G C,T 672 . AC=1,0;AF=0.333,0.00;AN=3;AS_AltDP=27,1;AS_QD=13.00,0.00;BaseQRankSum=0.292;DP=86;ExcessHet=0.0000;FS=5.494;MQ=60.00;MQRankSum=0;QD=12.76;ReadPosRankSum=0.202;SOR=1.349;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,237,237 0/1:27,27,1:55:99:.:702,0,682,776,755,1535:14,13,10,18 +chrX 3765682 . A G 721 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=10.43;BaseQRankSum=-2.238;DP=102;ExcessHet=0.0000;FS=4.667;MQ=60.00;MQRankSum=0;QD=10.43;ReadPosRankSum=-1.189;SOR=0.672;VarDP=72 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,237 0/1:41,31:72:99:.:751,0,1144:17,24,17,14 +chrX 3765700 . C CT 795.97 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=12.10;BaseQRankSum=-3.175;DP=101;ExcessHet=0.0000;FS=6.422;MQ=60.00;MQRankSum=0;QD=12.10;ReadPosRankSum=-0.092;SOR=0.801;VarDP=69 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,237 0/1:41,28:69:99:.:835,0,1328:17,24,16,12 +chrX 3765909 . G A 596 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=12.27;BaseQRankSum=1.246;DP=84;ExcessHet=0.0000;FS=15.943;MQ=60.00;MQRankSum=0;QD=12.27;ReadPosRankSum=1.454;SOR=1.347;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,237 0/1:27,24:51:99:.:626,0,696:9,18,16,8 +chrX 3766109 . A T 1026 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=19.56;BaseQRankSum=-0.795;DP=84;ExcessHet=0.0000;FS=7.543;MQ=60.00;MQRankSum=0;QD=19.56;ReadPosRankSum=-0.321;SOR=0.202;VarDP=54 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:30:99:30:.:.:0,237 0|1:26,28:54:99:.:0|1:3766109_A_T:1056,0,963:3766109:18,8,14,14 +chrX 3766113 . A G 994 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=19.32;BaseQRankSum=-0.53;DP=84;ExcessHet=0.0000;FS=5.783;MQ=60.00;MQRankSum=0;QD=19.32;ReadPosRankSum=0.763;SOR=0.229;VarDP=53 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:30:99:30:.:.:0,237 0|1:26,27:53:99:.:0|1:3766109_A_T:1024,0,966:3766109:18,8,14,13 +chrX 3766262 . A C 477 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=9.22;BaseQRankSum=-3.124;DP=88;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=9.22;ReadPosRankSum=1.272;SOR=0.743;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,237 0/1:33,22:55:99:.:507,0,980:19,14,13,9 +chrX 3766482 . A G 605 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=10.76;BaseQRankSum=-1.528;DP=90;ExcessHet=0.0000;FS=9.154;MQ=58.75;MQRankSum=-3.376;QD=10.76;ReadPosRankSum=-1.871;SOR=0.755;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,237 0/1:33,26:59:99:.:635,0,941:12,21,15,11 +chrX 3766583 . G C 766 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=11.54;BaseQRankSum=0.031;DP=99;ExcessHet=0.0000;FS=0.939;MQ=58.73;MQRankSum=-4.067;QD=11.54;ReadPosRankSum=0.448;SOR=0.517;VarDP=69 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,237 0/1:39,30:69:99:.:796,0,1067:24,15,17,13 +chrX 3766598 . C G 746 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=11.25;BaseQRankSum=0.652;DP=101;ExcessHet=0.0000;FS=0.945;MQ=58.77;MQRankSum=-4.067;QD=11.25;ReadPosRankSum=0.605;SOR=0.537;VarDP=69 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,237 0/1:39,30:69:99:.:776,0,1018:25,14,18,12 +chrX 3766855 . C T 684 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=12.31;BaseQRankSum=-1.188;DP=89;ExcessHet=0.0000;FS=0.000;MQ=59.78;MQRankSum=-0.966;QD=12.31;ReadPosRankSum=-0.7;SOR=0.570;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,237 0/1:29,29:58:99:.:714,0,770:17,12,16,13 +chrX 3767049 . G A 642 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=10.18;BaseQRankSum=1.588;DP=96;ExcessHet=0.0000;FS=0.958;MQ=60.00;MQRankSum=0;QD=10.18;ReadPosRankSum=-0.223;SOR=0.520;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,237 0/1:40,26:66:99:.:672,0,1043:22,18,13,13 +chrX 3767120 . G GTTTTTTTTTTC,GTTTTTTTTTTCT 658.97 . AC=1,0;AF=0.333,0.00;AN=3;AS_AltDP=10,4;AS_QD=20.53,19.61;BaseQRankSum=1.186;DP=87;ExcessHet=0.0000;FS=7.419;MQ=59.19;MQRankSum=-1.837;QD=18.37;ReadPosRankSum=0.394;SOR=1.718;VarDP=38 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,237,237 0/1:24,10,4:38:99:.:698,0,767,149,746,951:11,13,10,4 +chrX 3768656 . G A 449 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=14.09;BaseQRankSum=2.114;DP=65;ExcessHet=0.0000;FS=3.176;MQ=60.00;MQRankSum=0;QD=14.09;ReadPosRankSum=0.362;SOR=1.569;VarDP=34 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,237 0/1:17,17:34:99:.:479,0,429:9,8,12,5 +chrX 3769212 . C G 608 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=12.76;BaseQRankSum=-0.138;DP=82;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=12.76;ReadPosRankSum=1.35;SOR=0.693;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,237 0/1:26,24:50:99:.:638,0,724:13,13,12,12 +chrX 3769392 . A AT 155.97 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=5.74;BaseQRankSum=0.11;DP=71;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=5.74;ReadPosRankSum=-0.626;SOR=0.956;VarDP=34 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,237 0/1:23,11:34:99:.:195,0,560:8,15,3,8 +chrX 3769447 . A AT 153.97 . AC=1;AF=0.333;AN=3;AS_AltDP=10;AS_QD=6.66;BaseQRankSum=-0.47;DP=66;ExcessHet=0.0000;FS=1.561;MQ=60.00;MQRankSum=0;QD=6.66;ReadPosRankSum=0.023;SOR=0.399;VarDP=29 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,237 0/1:19,10:29:99:.:193,0,449:13,6,6,4 +chrX 3769881 . TATC T 635.97 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=16.46;BaseQRankSum=0.06;DP=76;ExcessHet=0.0000;FS=4.769;MQ=60.00;MQRankSum=0;QD=16.46;ReadPosRankSum=0.329;SOR=0.200;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,237 0/1:23,18:41:99:.:675,0,901:7,16,9,9 +chrX 3769987 . C G 231 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=7.68;BaseQRankSum=0.214;DP=65;ExcessHet=0.0000;FS=1.445;MQ=60.00;MQRankSum=0;QD=7.68;ReadPosRankSum=1.064;SOR=1.200;VarDP=34 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,237 0/1:22,12:34:99:.:261,0,553:12,10,8,4 +chrX 3770381 . T C 931 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=17.16;BaseQRankSum=-1.024;DP=87;ExcessHet=0.0000;FS=0.995;MQ=60.00;MQRankSum=0;QD=17.16;ReadPosRankSum=-0.066;SOR=0.846;VarDP=56 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:30:99:30:.:.:0,237 0|1:30,26:56:99:.:0|1:3770381_T_C:961,0,1168:3770381:15,15,12,14 +chrX 3770384 . C T 934 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=17.53;BaseQRankSum=0.591;DP=85;ExcessHet=0.0000;FS=1.029;MQ=60.00;MQRankSum=0;QD=17.53;ReadPosRankSum=0.113;SOR=0.793;VarDP=55 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:30:99:30:.:.:0,237 0|1:29,26:55:99:.:0|1:3770381_T_C:964,0,1138:3770381:15,14,12,14 +chrX 3770761 . A G 1111 . AC=1;AF=0.333;AN=3;AS_AltDP=40;AS_QD=18.11;BaseQRankSum=-0.129;DP=95;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=18.11;ReadPosRankSum=0.6;SOR=0.644;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,237 0/1:23,40:63:99:.:1141,0,565:13,10,22,18 +chrX 3771011 . T C 470 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=9.09;BaseQRankSum=0.171;DP=88;ExcessHet=0.0000;FS=0.000;MQ=59.85;MQRankSum=0.242;QD=9.09;ReadPosRankSum=-0.113;SOR=0.566;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,237 0/1:34,21:55:99:.:500,0,912:15,19,10,11 +chrX 3771394 . C T 618 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=12.23;BaseQRankSum=1.687;DP=83;ExcessHet=0.0000;FS=2.323;MQ=60.00;MQRankSum=0;QD=12.23;ReadPosRankSum=0.885;SOR=0.713;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,237 0/1:29,24:53:99:.:648,0,772:16,13,11,13 +chrX 3771634 . A G 1020 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=15.22;BaseQRankSum=1.348;DP=103;ExcessHet=0.0000;FS=21.356;MQ=60.00;MQRankSum=0;QD=15.22;ReadPosRankSum=0.441;SOR=0.468;VarDP=69 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,237 0/1:31,38:69:99:.:1050,0,761:24,7,17,21 +chrX 3771645 . G C 963 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=14.39;BaseQRankSum=0.08;DP=101;ExcessHet=0.0000;FS=18.304;MQ=60.00;MQRankSum=0;QD=14.39;ReadPosRankSum=0.978;SOR=0.892;VarDP=69 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,237 0/1:31,38:69:99:.:993,0,791:22,9,15,23 +chrX 3771806 . A C 591 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=11.09;BaseQRankSum=-1.335;DP=90;ExcessHet=0.0000;FS=3.786;MQ=60.00;MQRankSum=0;QD=11.09;ReadPosRankSum=0.977;SOR=0.909;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,237 0/1:32,24:56:99:.:621,0,933:14,18,14,10 +chrX 3774163 . G A 670 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=11.67;BaseQRankSum=1.845;DP=92;ExcessHet=0.0000;FS=7.085;MQ=60.00;MQRankSum=0;QD=11.67;ReadPosRankSum=-0.993;SOR=1.396;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,237 0/1:34,26:60:99:.:700,0,900:18,16,9,17 +chrX 3774565 . CG C 1135.97 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=23.04;BaseQRankSum=-0.164;DP=81;ExcessHet=0.0000;FS=3.896;MQ=60.00;MQRankSum=0;QD=23.04;ReadPosRankSum=-0.431;SOR=1.091;VarDP=51 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:30:99:30:.:.:0,237 0|1:21,30:51:99:.:0|1:3774565_CG_C:1175,0,791:3774565:11,10,12,18 +chrX 3774567 . ACG A 1135.97 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=23.04;BaseQRankSum=-1.273;DP=81;ExcessHet=0.0000;FS=3.896;MQ=60.00;MQRankSum=0;QD=23.04;ReadPosRankSum=-0.603;SOR=1.091;VarDP=51 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:30:99:30:.:.:0,237 0|1:21,30:51:99:.:0|1:3774565_CG_C:1175,0,791:3774565:11,10,12,18 +chrX 3774776 . G A 645 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=14.67;BaseQRankSum=-1.065;DP=78;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.67;ReadPosRankSum=-0.299;SOR=0.616;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,237 0/1:20,26:46:99:.:675,0,515:12,8,15,11 +chrX 3775246 . ATTTTTTTTTTTTTTT ATTTTTTTT,A,ATTTTTTTTTTTTT 500.97 . AC=1,1,0;AF=0.333,0.333,0.00;AN=3;AS_AltDP=7,10,3;AS_QD=14.73,17.72,5.09;BaseQRankSum=-0.157;DP=96;ExcessHet=0.0000;FS=6.805;MQ=57.38;MQRankSum=0.196;QD=19.29;ReadPosRankSum=0.887;SOR=0.820;VarDP=28 GT:AD:DP:GQ:PL:SB 1:1,7,0,0:8:99:221,0,249,249:1,0,4,3 0/2:7,0,10,3:20:34:319,400,928,0,606,985,263,434,34,352:5,2,4,9 +chrX 3775325 . T C 332 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=9.53;BaseQRankSum=-1.018;DP=68;ExcessHet=0.0000;FS=0.000;MQ=57.40;MQRankSum=-1.702;QD=9.53;ReadPosRankSum=0.942;SOR=0.646;VarDP=38 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,297 0/1:23,15:38:99:.:362,0,665:9,14,6,9 +chrX 3775597 . G C 663 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=11.95;BaseQRankSum=-1.24;DP=89;ExcessHet=0.0000;FS=0.983;MQ=60.00;MQRankSum=0;QD=11.95;ReadPosRankSum=-0.608;SOR=0.851;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,297 0/1:31,27:58:99:.:693,0,861:16,15,15,12 +chrX 3775972 . CTT C 859.97 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=16.35;BaseQRankSum=-0.46;DP=84;ExcessHet=0.0000;FS=3.794;MQ=60.00;MQRankSum=0;QD=16.35;ReadPosRankSum=1.056;SOR=1.246;VarDP=55 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:29:99:29:.:.:0,297 0|1:31,24:55:99:.:0|1:3775972_CTT_C:899,0,1170:3775972:17,14,16,8 +chrX 3775978 . CTTTCTTT C 853.97 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=15.67;BaseQRankSum=-0.73;DP=87;ExcessHet=0.0000;FS=3.769;MQ=60.00;MQRankSum=0;QD=15.67;ReadPosRankSum=1.171;SOR=1.261;VarDP=57 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:29:99:29:.:.:0,297 0|1:33,24:57:99:.:0|1:3775972_CTT_C:893,0,1221:3775972:18,15,16,8 +chrX 3776262 . T C 605 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=12.45;BaseQRankSum=-0.555;DP=80;ExcessHet=0.0000;FS=4.176;MQ=60.00;MQRankSum=0;QD=12.45;ReadPosRankSum=-0.113;SOR=0.274;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,297 0/1:25,26:51:99:.:635,0,636:7,18,11,15 +chrX 3776316 . T C 842 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=15.85;BaseQRankSum=-2.043;DP=88;ExcessHet=0.0000;FS=1.082;MQ=60.00;MQRankSum=0;QD=15.85;ReadPosRankSum=-0.06;SOR=0.540;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,297 0/1:22,33:55:99:.:872,0,579:7,15,12,21 +chrX 3776620 . T C 675 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=15.33;BaseQRankSum=-1.098;DP=76;ExcessHet=0.0000;FS=0.000;MQ=59.80;MQRankSum=-0.795;QD=15.33;ReadPosRankSum=-0.837;SOR=0.812;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,297 0/1:19,27:46:99:.:705,0,493:9,10,12,15 +chrX 3776830 . C A 55 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=2.18;BaseQRankSum=-0.523;DP=70;ExcessHet=0.0000;FS=67.432;MQ=58.77;MQRankSum=-1.892;QD=2.18;ReadPosRankSum=1.987;SOR=5.889;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,297 0/1:21,18:39:85:.:85,0,496:17,4,0,18 +chrX 3777442 . T C 366 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=9.90;BaseQRankSum=-1.804;DP=69;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=9.90;ReadPosRankSum=-1.382;SOR=0.765;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,297 0/1:24,16:40:99:.:396,0,689:13,11,9,7 +chrX 3777626 . G A 1013 . AC=1;AF=0.333;AN=3;AS_AltDP=39;AS_QD=13.55;BaseQRankSum=0.33;DP=108;ExcessHet=0.0000;FS=1.865;MQ=60.00;MQRankSum=0;QD=13.55;ReadPosRankSum=-0.158;SOR=0.770;VarDP=77 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,297 0/1:38,39:77:99:.:1043,0,979:18,20,21,18 +chrX 3777789 . G GT 922.97 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=18.86;BaseQRankSum=0.045;DP=89;ExcessHet=0.0000;FS=5.881;MQ=60.00;MQRankSum=0;QD=18.86;ReadPosRankSum=2.017;SOR=1.609;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,297 0/1:26,25:51:99:.:962,0,1017:13,13,17,8 +chrX 3777794 . G GT,GTTTTGTTTTTGT 1107.97 . AC=1,0;AF=0.333,0.00;AN=3;AS_AltDP=25,0;AS_QD=24.40,4.77;BaseQRankSum=0.603;DP=90;ExcessHet=0.0000;FS=4.175;MQ=60.00;MQRankSum=0;QD=24.40;ReadPosRankSum=0.864;SOR=1.352;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,297,297 0/1:22,25,0:47:99:.:1147,0,1002,1042,920,2083:12,10,17,8 +chrX 3778688 . GTTGATTGGATTTTAATCCAATTTTAA G 1037.97 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=23.41;BaseQRankSum=0.644;DP=75;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=23.41;ReadPosRankSum=1.142;SOR=0.667;VarDP=46 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:29:99:29:.:.:0,297 0|1:19,27:46:99:.:0|1:3778688_GTTGATTGGATTTTAATCCAATTTTAA_G:1077,0,717:3778688:10,9,14,13 +chrX 3778717 . C CGT 1100.97 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=28.50;BaseQRankSum=0.888;DP=71;ExcessHet=0.0000;FS=5.073;MQ=60.00;MQRankSum=0;QD=28.50;ReadPosRankSum=0.842;SOR=0.479;VarDP=40 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:29:99:29:.:.:0,297 0|1:12,28:40:99:.:0|1:3778688_GTTGATTGGATTTTAATCCAATTTTAA_G:1140,0,419:3778688:4,8,15,13 +chrX 3779024 . C T 753 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=13.50;BaseQRankSum=-0.347;DP=88;ExcessHet=0.0000;FS=9.450;MQ=60.00;MQRankSum=0;QD=13.50;ReadPosRankSum=-2.07;SOR=0.797;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,297 0/1:29,29:58:99:.:783,0,794:19,10,12,17 +chrX 3779094 . C T 691 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=12.88;BaseQRankSum=-0.399;DP=88;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=12.88;ReadPosRankSum=0.09;SOR=0.588;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,297 0/1:29,27:56:99:.:721,0,785:18,11,16,11 +chrX 3779160 . T C 608 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=9.97;BaseQRankSum=0.148;DP=96;ExcessHet=0.0000;FS=3.502;MQ=60.00;MQRankSum=0;QD=9.97;ReadPosRankSum=1.115;SOR=1.220;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,297 0/1:38,26:64:99:.:638,0,991:19,19,16,10 +chrX 3779382 . G A 1107 . AC=1;AF=0.333;AN=3;AS_AltDP=41;AS_QD=17.77;BaseQRankSum=0.25;DP=95;ExcessHet=0.0000;FS=5.131;MQ=60.00;MQRankSum=0;QD=17.77;ReadPosRankSum=1.253;SOR=0.298;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,297 0/1:23,41:64:99:.:1137,0,543:15,8,21,20 +chrX 3780744 . G A 612 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=10.88;BaseQRankSum=-1.15;DP=90;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=10.88;ReadPosRankSum=0.246;SOR=0.770;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,297 0/1:34,25:59:99:.:642,0,960:17,17,12,13 +chrX 3783685 . G A 1096 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=32.17;DP=92;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.17;SOR=0.749;VarDP=35 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,35:35:99:.:1126,0:0,0,17,18 0/0:.:56:76:56:0,76,1076 +chrX 3784510 . A G 1042 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=33.50;DP=89;ExcessHet=0.0000;FS=0.000;MQ=59.85;QD=33.50;SOR=0.818;VarDP=32 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,32:32:99:.:1072,0:0,0,15,17 0/0:.:56:76:56:0,76,1076 +chrX 3785699 . G C 948 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=33.72;DP=85;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.72;SOR=0.906;VarDP=29 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,29:29:99:.:978,0:0,0,16,13 0/0:.:56:76:56:0,76,1076 +chrX 3785937 . A G 406 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=12.46;BaseQRankSum=-2.422;DP=69;ExcessHet=0.0000;FS=3.012;MQ=60.00;MQRankSum=0;QD=12.46;ReadPosRankSum=1.321;SOR=1.371;VarDP=35 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,253 0/1:18,17:35:99:.:436,0,521:9,9,11,6 +chrX 3786403 . G A 989 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=17.57;BaseQRankSum=1.132;DP=92;ExcessHet=0.0000;FS=0.000;MQ=59.75;MQRankSum=-1.504;QD=17.57;ReadPosRankSum=0.36;SOR=0.737;VarDP=58 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:31:99:31:.:.:0,253 0|1:31,27:58:99:.:0|1:3786403_G_A:1019,0,1143:3786403:13,18,11,16 +chrX 3786412 . C T 928 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=17.42;BaseQRankSum=0.56;DP=86;ExcessHet=0.0000;FS=1.049;MQ=59.83;MQRankSum=-1.537;QD=17.42;ReadPosRankSum=0.566;SOR=0.973;VarDP=55 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:31:99:31:.:.:0,253 0|1:30,25:55:99:.:0|1:3786403_G_A:958,0,1127:3786403:14,16,10,15 +chrX 3786429 . A AT 712.97 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=16.00;BaseQRankSum=0.33;DP=83;ExcessHet=0.0000;FS=4.134;MQ=60.00;MQRankSum=0;QD=16.00;ReadPosRankSum=1.066;SOR=0.662;VarDP=47 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:31:99:31:.:.:0,253 0|1:27,20:47:99:.:0|1:3786429_A_AT:752,0,1074:3786429:16,11,9,11 +chrX 3786433 . A C 722 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=16.00;BaseQRankSum=-0.07;DP=81;ExcessHet=0.0000;FS=4.134;MQ=60.00;MQRankSum=0;QD=16.00;ReadPosRankSum=0.969;SOR=0.662;VarDP=47 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:31:99:31:.:.:0,253 0|1:27,20:47:99:.:0|1:3786429_A_AT:752,0,1074:3786429:16,11,9,11 +chrX 3787157 . G A 952 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=16.37;BaseQRankSum=1.621;DP=95;ExcessHet=0.0000;FS=0.998;MQ=60.00;MQRankSum=0;QD=16.37;ReadPosRankSum=-1.261;SOR=0.693;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,253 0/1:26,34:60:99:.:982,0,659:14,12,16,18 +chrX 3787427 . T TATCA 1198.97 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=23.81;BaseQRankSum=-1.511;DP=85;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=23.81;ReadPosRankSum=1.912;SOR=0.793;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,253 0/1:21,31:52:99:.:1238,0,789:11,10,17,14 +chrX 3788564 . CAAAAAAAAA C,CAAAAA 829.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=15,11;AS_QD=33.00,24.46;BaseQRankSum=-0.502;DP=72;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=31.04;ReadPosRankSum=0.193;SOR=1.022;VarDP=28 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,253,253 1/2:2,15,11:28:99:.:869,308,623,551,0,557:1,1,15,11 +chrX 3789486 . T TC 960.97 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=18.18;BaseQRankSum=0.131;DP=88;ExcessHet=0.0000;FS=1.070;MQ=60.00;MQRankSum=0;QD=18.18;ReadPosRankSum=0.051;SOR=0.465;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,253 0/1:26,29:55:99:.:1000,0,862:9,17,12,17 +chrX 3789817 . G A 761 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=13.18;BaseQRankSum=2.18;DP=92;ExcessHet=0.0000;FS=0.960;MQ=60.00;MQRankSum=0;QD=13.18;ReadPosRankSum=-0.052;SOR=0.836;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,253 0/1:32,28:60:99:.:791,0,850:16,16,15,13 +chrX 3789946 . A C 687 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=13.28;BaseQRankSum=-0.757;DP=89;ExcessHet=0.0000;FS=5.597;MQ=60.00;MQRankSum=0;QD=13.28;ReadPosRankSum=0.831;SOR=1.034;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,253 0/1:26,28:54:99:.:717,0,713:11,15,17,11 +chrX 3790709 . CTT C,CTTT 619.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=10,20;AS_QD=20.80,18.65;DP=81;ExcessHet=0.0000;FS=0.000;MQ=58.43;QD=21.97;SOR=1.329;VarDP=30 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,253,253 1/2:0,10,20:30:99:.:659,451,762,286,0,296:0,0,19,11 +chrX 3790961 . A G 2018 . AC=2;AF=0.667;AN=3;AS_AltDP=66;AS_QD=31.03;DP=98;ExcessHet=0.0000;FS=0.000;MQ=59.96;QD=31.03;SOR=1.196;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,253 1/1:0,66:66:99:.:2048,196,0:0,0,26,40 +chrX 3791028 . C T 878 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=14.89;BaseQRankSum=-0.626;DP=96;ExcessHet=0.0000;FS=3.524;MQ=59.95;MQRankSum=0;QD=14.89;ReadPosRankSum=-0.843;SOR=0.799;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,253 0/1:27,34:61:99:.:908,0,690:15,12,15,19 +chrX 3791881 . C CTT,CTTTTT 375.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=12,4;AS_QD=25.63,23.75;BaseQRankSum=0.924;DP=77;ExcessHet=0.0000;FS=0.000;MQ=58.80;MQRankSum=-0.635;QD=20.75;ReadPosRankSum=-0.996;SOR=0.693;VarDP=20 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,253,253 1/2:4,12,4:20:5:.:415,5,48,225,0,426:1,3,5,11 +chrX 3792526 . G C 662 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=13.31;BaseQRankSum=-1.378;DP=85;ExcessHet=0.0000;FS=2.307;MQ=60.00;MQRankSum=0;QD=13.31;ReadPosRankSum=-1.377;SOR=0.430;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,253 0/1:24,28:52:99:.:692,0,635:10,14,14,14 +chrX 3792628 . G C 492 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=16.84;BaseQRankSum=-0.095;DP=63;ExcessHet=0.0000;FS=6.205;MQ=60.00;MQRankSum=0;QD=16.84;ReadPosRankSum=-0.406;SOR=0.124;VarDP=31 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,253 0/1:12,19:31:99:.:522,0,305:2,10,8,11 +chrX 3792702 . T A 1736 . AC=3;AF=1.00;AN=3;AS_AltDP=52;AS_QD=33.96;DP=58;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.96;SOR=0.693;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:778,0:0,0,11,12 1/1:0,29:29:87:988,87,0:0,0,15,14 +chrX 3792823 . T C 207 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=6.41;BaseQRankSum=-1.22;DP=70;ExcessHet=0.0000;FS=11.030;MQ=60.00;MQRankSum=0;QD=6.41;ReadPosRankSum=0.416;SOR=1.701;VarDP=37 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,561 0/1:26,11:37:99:.:237,0,763:10,16,8,3 +chrX 3792846 . C CA 538.97 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=16.06;BaseQRankSum=0.831;DP=71;ExcessHet=0.0000;FS=11.247;MQ=60.00;MQRankSum=0;QD=16.06;ReadPosRankSum=0.991;SOR=1.001;VarDP=36 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,561 0/1:12,24:36:99:.:578,0,236:9,3,9,15 +chrX 3793380 . C T 927 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=13.48;BaseQRankSum=1.902;DP=104;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.48;ReadPosRankSum=-0.403;SOR=0.641;VarDP=71 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,561 0/1:35,36:71:99:.:957,0,837:18,17,18,18 +chrX 3794057 . A C 37 . AC=1;AF=0.333;AN=3;AS_AltDP=6;AS_QD=2.68;BaseQRankSum=-1.451;DP=59;ExcessHet=0.0000;FS=31.875;MQ=60.00;MQRankSum=0;QD=2.68;ReadPosRankSum=0.095;SOR=2.198;VarDP=25 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,561 0/1:19,6:25:67:.:67,0,530:1,18,5,1 +chrX 3795068 . C G 1557 . AC=2;AF=0.667;AN=3;AS_AltDP=48;AS_QD=33.06;DP=80;ExcessHet=0.0000;FS=0.000;MQ=59.88;QD=33.06;SOR=1.067;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,561 1/1:0,48:48:99:.:1587,144,0:0,0,20,28 +chrX 3795124 . T C 478 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=11.55;BaseQRankSum=-1.128;DP=80;ExcessHet=0.0000;FS=6.234;MQ=60.00;MQRankSum=0;QD=11.55;ReadPosRankSum=-1.745;SOR=1.334;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,561 0/1:24,20:44:99:.:508,0,682:13,11,7,13 +chrX 3795468 . T C 610 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=14.88;BaseQRankSum=0.203;DP=78;ExcessHet=0.0000;FS=1.192;MQ=60.00;MQRankSum=0;QD=14.88;ReadPosRankSum=0.183;SOR=0.446;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,561 0/1:20,23:43:99:.:640,0,535:12,8,12,11 +chrX 3795824 . A G 839 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=12.24;BaseQRankSum=-0.016;DP=105;ExcessHet=0.0000;FS=0.000;MQ=59.80;MQRankSum=0;QD=12.24;ReadPosRankSum=-2.107;SOR=0.755;VarDP=71 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,561 0/1:37,34:71:99:.:869,0,993:18,19,16,18 +chrX 3795932 . T TGAGA 1612.97 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=31.17;BaseQRankSum=2.645;DP=93;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=31.17;ReadPosRankSum=1.541;SOR=0.900;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,561 1/1:2,51:53:99:.:1652,110,0:1,1,28,23 +chrX 3796601 . G A 767 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=14.76;BaseQRankSum=2.233;DP=92;ExcessHet=0.0000;FS=1.055;MQ=58.27;MQRankSum=-2.601;QD=14.76;ReadPosRankSum=-2.057;SOR=0.976;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,561 0/1:25,29:54:99:.:797,0,567:12,13,12,17 +chrX 3796647 . C T 702 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=14.94;BaseQRankSum=0.498;DP=85;ExcessHet=0.0000;FS=1.092;MQ=57.85;MQRankSum=-3.871;QD=14.94;ReadPosRankSum=0.755;SOR=0.922;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,561 0/1:22,27:49:99:.:732,0,542:11,11,12,15 +chrX 3796912 . A G 1874 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=34.00;DP=90;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=34.00;SOR=0.922;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,561 1/1:0,56:56:99:.:1904,168,0:0,0,31,25 +chrX 3799660 . C G 680 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=14.49;BaseQRankSum=-2.388;DP=83;ExcessHet=0.0000;FS=4.189;MQ=60.00;MQRankSum=0;QD=14.49;ReadPosRankSum=0.987;SOR=0.381;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,561 0/1:20,29:49:99:.:710,0,529:13,7,14,15 +chrX 3799779 . A G 1492 . AC=2;AF=0.667;AN=3;AS_AltDP=48;AS_QD=31.71;DP=80;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.71;SOR=1.179;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,561 1/1:0,48:48:99:.:1522,143,0:0,0,19,29 +chrX 3799817 . A G 727 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=16.82;BaseQRankSum=-0.021;DP=78;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=16.82;ReadPosRankSum=-0.417;SOR=0.852;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,561 0/1:18,27:45:99:.:757,0,471:8,10,11,16 +chrX 3799902 . A G 508 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=9.96;BaseQRankSum=-0.538;DP=89;ExcessHet=0.0000;FS=2.507;MQ=60.00;MQRankSum=0;QD=9.96;ReadPosRankSum=-0.403;SOR=0.354;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,561 0/1:31,23:54:99:.:538,0,836:22,9,14,9 +chrX 3799992 . T G 739 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=11.65;BaseQRankSum=0.554;DP=99;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=11.65;ReadPosRankSum=-1.202;SOR=0.596;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,561 0/1:35,31:66:99:.:769,0,898:19,16,16,15 +chrX 3800019 . G C 698 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=12.34;BaseQRankSum=2.623;DP=94;ExcessHet=0.0000;FS=7.155;MQ=60.00;MQRankSum=0;QD=12.34;ReadPosRankSum=-0.296;SOR=1.302;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,561 0/1:31,28:59:99:.:728,0,695:14,17,18,10 +chrX 3800265 . C G 787 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=12.57;BaseQRankSum=0.458;DP=103;ExcessHet=0.0000;FS=3.370;MQ=60.00;MQRankSum=0;QD=12.57;ReadPosRankSum=0.769;SOR=0.732;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,561 0/1:34,31:65:99:.:817,0,902:19,15,14,17 +chrX 3800503 . A AT,ATTTT 581.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=14,14;AS_QD=10.38,19.19;BaseQRankSum=-0.751;DP=69;ExcessHet=0.0000;FS=4.163;MQ=58.80;MQRankSum=0;QD=17.74;ReadPosRankSum=0.635;SOR=1.535;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,14,0:14:99:218,0,218:0,0,8,6 0/2:7,0,14:21:99:403,424,641,0,216,174:3,4,11,3 +chrX 3801875 . C T 790 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=16.08;BaseQRankSum=1.207;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=16.08;ReadPosRankSum=1.408;SOR=0.743;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,99 0/1:22,29:51:99:.:820,0,558:7,15,9,20 +chrX 3802051 . CAG C 964.97 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=19.69;BaseQRankSum=0.881;DP=82;ExcessHet=0.0000;FS=2.422;MQ=60.00;MQRankSum=0;QD=19.69;ReadPosRankSum=1.093;SOR=1.123;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,99 0/1:25,26:51:99:.:1004,0,957:14,11,17,9 +chrX 3802225 . G C 232 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=13.10;BaseQRankSum=-0.821;DP=49;ExcessHet=0.0000;FS=0.000;MQ=58.67;MQRankSum=-0.804;QD=13.10;ReadPosRankSum=0.837;SOR=0.437;VarDP=20 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,99 0/1:9,11:20:99:.:262,0,243:1,8,2,9 +chrX 3802455 . C T 559 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=14.73;BaseQRankSum=-1.855;DP=69;ExcessHet=0.0000;FS=4.590;MQ=60.00;MQRankSum=0;QD=14.73;ReadPosRankSum=-0.83;SOR=0.255;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,99 0/1:18,22:40:99:.:589,0,506:6,12,11,11 +chrX 3802559 . A T 623 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=13.89;BaseQRankSum=-0.717;DP=79;ExcessHet=0.0000;FS=4.301;MQ=60.00;MQRankSum=0;QD=13.89;ReadPosRankSum=-0.362;SOR=0.263;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,99 0/1:23,24:47:99:.:653,0,623:16,7,13,11 +chrX 3803019 . A G 517 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=10.73;BaseQRankSum=0.09;DP=82;ExcessHet=0.0000;FS=1.058;MQ=60.00;MQRankSum=0;QD=10.73;ReadPosRankSum=0.371;SOR=0.547;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,99 0/1:29,22:51:99:.:547,0,770:12,17,10,12 +chrX 3803297 . C T 432 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=8.40;BaseQRankSum=1.153;DP=89;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=8.40;ReadPosRankSum=0.884;SOR=0.678;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,99 0/1:35,20:55:99:.:462,0,878:14,21,8,12 +chrX 3803331 . G A 631 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=11.80;BaseQRankSum=0.384;DP=88;ExcessHet=0.0000;FS=5.523;MQ=60.00;MQRankSum=0;QD=11.80;ReadPosRankSum=-0.486;SOR=0.396;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,99 0/1:31,25:56:99:.:661,0,834:11,20,13,12 +chrX 3803378 . TA T 662.97 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=12.54;BaseQRankSum=-0.36;DP=94;ExcessHet=0.0000;FS=9.749;MQ=60.00;MQRankSum=0;QD=12.54;ReadPosRankSum=0.519;SOR=0.998;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,99 0/1:25,31:56:99:.:702,0,515:16,9,12,19 +chrX 3804413 . A G 842 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=12.46;BaseQRankSum=0.075;DP=102;ExcessHet=0.0000;FS=3.285;MQ=59.21;MQRankSum=-0.073;QD=12.46;ReadPosRankSum=-0.8;SOR=0.363;VarDP=70 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,99 0/1:37,33:70:99:.:872,0,1008:14,23,16,17 +chrX 3805346 . T C 805 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=12.10;BaseQRankSum=0.524;DP=102;ExcessHet=0.0000;FS=4.703;MQ=60.00;MQRankSum=0;QD=12.10;ReadPosRankSum=2.151;SOR=0.436;VarDP=69 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,99 0/1:36,33:69:99:.:835,0,909:22,14,16,17 +chrX 3805612 . CAAAAAAA C,CA,CAAAAAAAA 788.97 . AC=1,0,1;AF=0.333,0.00,0.333;AN=3;AS_AltDP=13,2,17;AS_QD=30.85,27.00,10.55;BaseQRankSum=0;DP=69;ExcessHet=0.0000;FS=12.548;MQ=58.48;MQRankSum=-0.509;QD=23.66;ReadPosRankSum=-1.622;SOR=1.231;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,13,2,0:15:99:617,0,220,451:0,0,9,6 0/3:3,0,0,17:20:2:211,220,270,220,270,270,0,50,50,2:3,0,2,15 +chrX 3805756 . A G 873 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=14.80;BaseQRankSum=0.466;DP=91;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.80;ReadPosRankSum=-0.08;SOR=0.830;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,436 0/1:27,34:61:99:.:903,0,676:15,12,20,14 +chrX 3806762 . A T 989 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=15.21;BaseQRankSum=-0.523;DP=99;ExcessHet=0.0000;FS=0.923;MQ=60.00;MQRankSum=0;QD=15.21;ReadPosRankSum=0.342;SOR=0.576;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,436 0/1:29,38:67:99:.:1019,0,747:17,12,21,17 +chrX 3807360 . A G 861 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=12.73;BaseQRankSum=-1.02;DP=100;ExcessHet=0.0000;FS=8.219;MQ=60.00;MQRankSum=0;QD=12.73;ReadPosRankSum=0.2;SOR=0.869;VarDP=70 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,436 0/1:36,34:70:99:.:891,0,991:22,14,14,20 +chrX 3808325 . T G 920 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=14.84;BaseQRankSum=0.951;DP=95;ExcessHet=0.0000;FS=10.607;MQ=60.00;MQRankSum=0;QD=14.84;ReadPosRankSum=1.272;SOR=0.842;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,436 0/1:30,34:64:99:.:950,0,774:11,19,20,14 +chrX 3808436 . G A 645 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=14.06;BaseQRankSum=-1.463;DP=84;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.06;ReadPosRankSum=2.059;SOR=0.846;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,436 0/1:22,26:48:99:.:675,0,586:11,11,12,14 +chrX 3808613 . G C 414 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=11.38;BaseQRankSum=-0.692;DP=70;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=11.38;ReadPosRankSum=0.226;SOR=0.610;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,436 0/1:21,18:39:99:.:444,0,572:10,11,9,9 +chrX 3808976 . G T 1161 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=20.89;BaseQRankSum=-0.985;DP=89;ExcessHet=0.0000;FS=5.389;MQ=60.00;MQRankSum=0;QD=20.89;ReadPosRankSum=-1.387;SOR=0.620;VarDP=57 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:30:99:30:.:.:0,436 0|1:26,31:57:99:.:0|1:3808976_G_T:1191,0,976:3808976:10,16,17,14 +chrX 3808981 . G A 1135 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=21.57;BaseQRankSum=0.025;DP=86;ExcessHet=0.0000;FS=2.277;MQ=60.00;MQRankSum=0;QD=21.57;ReadPosRankSum=-1.942;SOR=0.430;VarDP=54 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:30:99:30:.:.:0,436 0|1:24,30:54:99:.:0|1:3808976_G_T:1165,0,917:3808976:10,14,15,15 +chrX 3809353 . T C 718 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=14.96;BaseQRankSum=1.329;DP=82;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.96;ReadPosRankSum=0.633;SOR=0.829;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,436 0/1:23,27:50:99:.:748,0,579:11,12,12,15 +chrX 3809467 . G A 561 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=13.74;BaseQRankSum=1.395;DP=75;ExcessHet=0.0000;FS=2.790;MQ=60.00;MQRankSum=0;QD=13.74;ReadPosRankSum=0.515;SOR=0.317;VarDP=43 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:30:99:30:.:.:0,436 0|1:27,16:43:99:.:0|1:3809467_G_A:591,0,1064:3809467:17,10,8,8 +chrX 3809471 . C G 567 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=14.56;BaseQRankSum=1.182;DP=71;ExcessHet=0.0000;FS=1.263;MQ=60.00;MQRankSum=0;QD=14.56;ReadPosRankSum=0.174;SOR=0.387;VarDP=41 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:30:99:30:.:.:0,436 0|1:25,16:41:99:.:0|1:3809467_G_A:597,0,1002:3809467:15,10,8,8 +chrX 3809806 . A C 849 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=12.74;BaseQRankSum=-2.431;DP=101;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=12.74;ReadPosRankSum=0.517;SOR=0.743;VarDP=69 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,436 0/1:33,36:69:99:.:879,0,890:17,16,19,17 +chrX 3810086 . T TAC 851.97 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=33.00;DP=83;ExcessHet=0.0000;FS=0.000;MQ=59.19;QD=33.00;SOR=0.765;VarDP=27 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,27:27:99:.:891,0:0,0,14,13 0/0:.:52:0:52:0,0,742 +chrX 3810113 . A AC 686.97 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=19.11;BaseQRankSum=1.471;DP=71;ExcessHet=0.0000;FS=0.000;MQ=58.16;MQRankSum=-1.748;QD=19.11;ReadPosRankSum=-0.38;SOR=0.910;VarDP=38 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:31:99:31:.:.:0,387 0|1:19,19:38:99:.:0|1:3810113_A_AC:726,0,741:3810113:11,8,12,7 +chrX 3810114 . A ACACACACACACACACACACAC 683.97 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=18.54;BaseQRankSum=0.514;DP=72;ExcessHet=0.0000;FS=0.000;MQ=58.21;MQRankSum=-1.794;QD=18.54;ReadPosRankSum=-0.228;SOR=0.818;VarDP=39 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:31:99:31:.:.:0,387 0|1:20,19:39:99:.:0|1:3810113_A_AC:723,0,771:3810113:12,8,12,7 +chrX 3810116 . A C 665 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=18.29;BaseQRankSum=1.662;DP=70;ExcessHet=0.0000;FS=0.000;MQ=58.77;MQRankSum=-1.844;QD=18.29;ReadPosRankSum=0.439;SOR=0.732;VarDP=38 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:31:99:31:.:.:0,387 0|1:20,18:38:99:.:0|1:3810113_A_AC:695,0,774:3810113:12,8,11,7 +chrX 3810384 . T C 648 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=11.89;BaseQRankSum=1.163;DP=89;ExcessHet=0.0000;FS=3.679;MQ=59.92;MQRankSum=0.919;QD=11.89;ReadPosRankSum=1.593;SOR=0.782;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,387 0/1:32,25:57:99:.:678,0,878:14,18,14,11 +chrX 3810434 . T TC 925.97 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=17.55;BaseQRankSum=-0.148;DP=94;ExcessHet=0.0000;FS=0.000;MQ=59.63;MQRankSum=-0.946;QD=17.55;ReadPosRankSum=-0.337;SOR=0.610;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,387 0/1:27,28:55:99:.:965,0,856:17,10,17,11 +chrX 3810818 . T C 840 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=12.08;BaseQRankSum=-0.804;DP=105;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=12.08;ReadPosRankSum=0.587;SOR=0.627;VarDP=72 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,387 0/1:38,34:72:99:.:870,0,1064:15,23,14,20 +chrX 3811336 . C T 1385 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=20.81;BaseQRankSum=2.819;DP=100;ExcessHet=0.0000;FS=0.000;MQ=59.94;MQRankSum=-0.913;QD=20.81;ReadPosRankSum=-0.025;SOR=0.804;VarDP=68 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:31:99:31:.:.:0,387 0|1:32,36:68:99:.:0|1:3811336_C_T:1415,0,1235:3811336:16,16,17,19 +chrX 3811337 . A G 1385 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=20.81;BaseQRankSum=3.003;DP=99;ExcessHet=0.0000;FS=0.000;MQ=59.94;MQRankSum=-0.913;QD=20.81;ReadPosRankSum=0.061;SOR=0.804;VarDP=68 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:31:99:31:.:.:0,387 0|1:32,36:68:99:.:0|1:3811336_C_T:1415,0,1235:3811336:16,16,17,19 +chrX 3811496 . T C 769 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=15.67;BaseQRankSum=-1.624;DP=84;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=15.67;ReadPosRankSum=-1.036;SOR=0.666;VarDP=51 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:31:99:31:.:.:0,387 0|1:28,23:51:99:.:0|1:3811496_T_C:799,0,1045:3811496:16,12,13,10 +chrX 3811516 . G A 768 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=15.35;BaseQRankSum=-0.259;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=15.35;ReadPosRankSum=0.848;SOR=0.671;VarDP=52 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:31:99:31:.:.:0,387 0|1:29,23:52:99:.:0|1:3811496_T_C:798,0,1057:3811496:19,10,15,8 +chrX 3811584 . C T 492 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=11.35;BaseQRankSum=-0.477;DP=78;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=11.35;ReadPosRankSum=-0.221;SOR=0.566;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,387 0/1:25,21:46:99:.:522,0,636:11,14,10,11 +chrX 3811842 . G A 890 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=17.04;BaseQRankSum=1.4;DP=87;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=17.04;ReadPosRankSum=1.198;SOR=0.714;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,387 0/1:22,32:54:99:.:920,0,538:13,9,19,13 +chrX 3811902 . C A 923 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=15.62;BaseQRankSum=-1.793;DP=94;ExcessHet=0.0000;FS=5.310;MQ=60.00;MQRankSum=0;QD=15.62;ReadPosRankSum=-1.927;SOR=0.561;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,387 0/1:24,37:61:99:.:953,0,622:15,9,17,20 +chrX 3812024 . T C 623 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=13.89;BaseQRankSum=0.183;DP=78;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.89;ReadPosRankSum=-0.661;SOR=0.770;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,387 0/1:22,25:47:99:.:653,0,563:11,11,12,13 +chrX 3812169 . C T 697 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=14.84;BaseQRankSum=0.643;DP=80;ExcessHet=0.0000;FS=1.100;MQ=60.00;MQRankSum=0;QD=14.84;ReadPosRankSum=-0.812;SOR=0.481;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,387 0/1:23,26:49:99:.:727,0,597:13,10,13,13 +chrX 3812303 . T C 683 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=12.51;BaseQRankSum=0.31;DP=89;ExcessHet=0.0000;FS=2.212;MQ=59.86;MQRankSum=0.951;QD=12.51;ReadPosRankSum=0.088;SOR=0.446;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,387 0/1:31,26:57:99:.:713,0,861:19,12,14,12 +chrX 3812451 . C T 574 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=12.08;BaseQRankSum=1.954;DP=82;ExcessHet=0.0000;FS=4.124;MQ=60.00;MQRankSum=0;QD=12.08;ReadPosRankSum=-1.124;SOR=1.402;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,387 0/1:28,22:50:99:.:604,0,753:13,15,7,15 +chrX 3813168 . A G 760 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=14.63;BaseQRankSum=-1.934;DP=85;ExcessHet=0.0000;FS=1.092;MQ=60.00;MQRankSum=0;QD=14.63;ReadPosRankSum=-1.472;SOR=0.469;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,387 0/1:24,30:54:99:.:790,0,652:8,16,12,18 +chrX 3813180 . A AT 577.97 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=11.22;BaseQRankSum=-0.06;DP=90;ExcessHet=0.0000;FS=3.786;MQ=60.00;MQRankSum=0;QD=11.22;ReadPosRankSum=-0.244;SOR=0.317;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,387 0/1:27,28:55:99:.:617,0,586:10,17,14,14 +chrX 3814208 . A G 546 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=15.16;BaseQRankSum=-0.581;DP=70;ExcessHet=0.0000;FS=2.961;MQ=60.00;MQRankSum=0;QD=15.16;ReadPosRankSum=0.059;SOR=0.307;VarDP=38 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,387 0/1:17,21:38:99:.:576,0,457:12,5,12,9 +chrX 3814275 . C CA 333.97 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=14.35;BaseQRankSum=-1.48;DP=73;ExcessHet=0.0000;FS=1.909;MQ=58.93;MQRankSum=-0.932;QD=14.35;ReadPosRankSum=0.402;SOR=1.402;VarDP=26 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,387 0/1:6,20:26:69:.:373,0,69:3,3,7,13 +chrX 3814291 . G GA 440.97 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=15.00;BaseQRankSum=-0.701;DP=73;ExcessHet=0.0000;FS=9.755;MQ=58.93;MQRankSum=-1.255;QD=15.00;ReadPosRankSum=0.516;SOR=0.054;VarDP=32 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,387 0/1:11,21:32:99:.:480,0,196:1,10,9,12 +chrX 3814793 . C T 808 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=12.89;BaseQRankSum=2.898;DP=99;ExcessHet=0.0000;FS=2.092;MQ=60.00;MQRankSum=0;QD=12.89;ReadPosRankSum=-0.83;SOR=1.071;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,387 0/1:35,30:65:99:.:838,0,911:17,18,12,18 +chrX 3814897 . G C 445 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=8.64;BaseQRankSum=1.878;DP=87;ExcessHet=0.0000;FS=7.892;MQ=60.00;MQRankSum=0;QD=8.64;ReadPosRankSum=-0.381;SOR=1.154;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,387 0/1:36,19:55:99:.:475,0,936:21,15,7,12 +chrX 3815162 . G A 711 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=11.23;BaseQRankSum=2.671;DP=100;ExcessHet=0.0000;FS=0.959;MQ=60.00;MQRankSum=0;QD=11.23;ReadPosRankSum=0.411;SOR=0.852;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,387 0/1:39,27:66:99:.:741,0,1037:23,16,17,10 +chrX 3815619 . AGCGGGTGCC A 1152.97 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=15.68;BaseQRankSum=0.064;DP=116;ExcessHet=0.0000;FS=3.114;MQ=60.00;MQRankSum=0;QD=15.68;ReadPosRankSum=0.703;SOR=1.112;VarDP=76 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,387 0/1:44,32:76:99:.:1192,0,1708:22,22,19,13 +chrX 3815651 . G T 718 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=9.71;BaseQRankSum=2.34;DP=109;ExcessHet=0.0000;FS=1.966;MQ=60.00;MQRankSum=0;QD=9.71;ReadPosRankSum=0.716;SOR=1.045;VarDP=77 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,387 0/1:47,30:77:99:.:748,0,1143:26,21,19,11 +chrX 3816540 . G A 412 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=11.33;BaseQRankSum=0.718;DP=73;ExcessHet=0.0000;FS=1.307;MQ=60.00;MQRankSum=0;QD=11.33;ReadPosRankSum=-0.737;SOR=0.990;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,387 0/1:22,17:39:99:.:442,0,582:14,8,12,5 +chrX 3817691 . G A 678 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=11.61;BaseQRankSum=1.4;DP=93;ExcessHet=0.0000;FS=0.983;MQ=59.74;MQRankSum=-1.577;QD=11.61;ReadPosRankSum=0.385;SOR=0.922;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,387 0/1:34,27:61:99:.:708,0,907:17,17,12,15 +chrX 3818448 . C T 574 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=12.08;BaseQRankSum=0.129;DP=82;ExcessHet=0.0000;FS=1.088;MQ=60.00;MQRankSum=0;QD=12.08;ReadPosRankSum=-0.535;SOR=0.910;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,387 0/1:27,23:50:99:.:604,0,747:12,15,9,14 +chrX 3818892 . C CTTTTTTTTTTTTTT 394.97 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=14.00;BaseQRankSum=-1.819;DP=66;ExcessHet=0.0000;FS=1.451;MQ=59.33;MQRankSum=-1.761;QD=14.00;ReadPosRankSum=-1.907;SOR=0.957;VarDP=31 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,387 0/1:19,12:31:99:.:434,0,729:10,9,5,7 +chrX 3818960 . G A 691 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=21.21;BaseQRankSum=1.356;DP=68;ExcessHet=0.0000;FS=0.000;MQ=59.82;MQRankSum=1.733;QD=21.21;ReadPosRankSum=-1.406;SOR=0.617;VarDP=34 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,387 0/1:9,25:34:99:.:721,0,181:5,4,12,13 +chrX 3820007 . T C 1829 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=32.05;DP=90;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.05;SOR=0.762;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,387 1/1:0,58:58:99:.:1859,174,0:0,0,28,30 +chrX 3820114 . A G 658 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=11.10;BaseQRankSum=-0.444;DP=95;ExcessHet=0.0000;FS=8.766;MQ=60.00;MQRankSum=0;QD=11.10;ReadPosRankSum=1.492;SOR=1.181;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,387 0/1:35,27:62:99:.:688,0,932:20,15,10,17 +chrX 3820463 . C T 1875 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=32.29;DP=92;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.29;SOR=1.034;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,387 1/1:0,59:59:99:.:1905,177,0:0,0,25,34 +chrX 3820546 . A AAAAAAC 3596.97 . AC=3;AF=1.00;AN=3;AS_AltDP=82;AS_QD=27.66;DP=101;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.34;SOR=1.022;VarDP=82 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:1365,0:0,0,12,19 1/1:0,51:51:99:2271,153,0:0,0,23,28 +chrX 3821036 . A G 498 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=10.78;BaseQRankSum=1.001;DP=56;ExcessHet=0.0000;FS=16.312;MQ=60.00;MQRankSum=0;QD=10.78;ReadPosRankSum=-0.356;SOR=1.191;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:35:3:0,35 0/1:29,20:49:99:.:528,0,801:20,9,7,13 +chrX 3821545 . G A 274 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=7.41;BaseQRankSum=0.073;DP=47;ExcessHet=0.0000;FS=1.345;MQ=60.00;MQRankSum=0;QD=7.41;ReadPosRankSum=-0.014;SOR=0.377;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:35:3:0,35 0/1:27,14:41:99:.:304,0,746:9,18,6,8 +chrX 3821671 . ATCTAC A 770.97 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=18.00;BaseQRankSum=0.025;DP=49;ExcessHet=0.0000;FS=1.164;MQ=55.24;MQRankSum=-1.676;QD=18.00;ReadPosRankSum=-1.045;SOR=0.518;VarDP=45 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:28:35:3:.:.:0,35 0|1:24,21:45:99:.:0|1:3821671_ATCTAC_A:810,0,934:3821671:16,8,13,8 +chrX 3821686 . T C 873 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=18.81;BaseQRankSum=0.387;DP=52;ExcessHet=0.0000;FS=1.157;MQ=54.12;MQRankSum=-2.128;QD=18.81;ReadPosRankSum=-1.093;SOR=0.419;VarDP=48 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:28:35:3:.:.:0,35 0|1:24,24:48:99:.:0|1:3821671_ATCTAC_A:903,0,915:3821671:16,8,14,10 +chrX 3822734 . AGTGT A 1002.97 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=19.30;BaseQRankSum=-0.224;DP=59;ExcessHet=0.0000;FS=3.855;MQ=58.98;MQRankSum=-1.401;QD=19.30;ReadPosRankSum=1.375;SOR=0.420;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:35:3:0,35 0/1:27,27:54:99:.:1042,0,1021:10,17,14,13 +chrX 3822870 . C CTGTG,CTGTGTGTGTG 2098.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=26,23;AS_QD=31.94,31.33;DP=60;ExcessHet=0.0000;FS=0.000;MQ=57.11;QD=43.63;SOR=0.909;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:35:3:0,35,35 1/2:0,26,23:49:99:.:2138,962,875,1098,0,1023:0,0,27,22 +chrX 3822912 . G A 732 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=12.70;BaseQRankSum=-0.455;DP=64;ExcessHet=0.0000;FS=2.188;MQ=58.21;MQRankSum=-3.285;QD=12.70;ReadPosRankSum=0.873;SOR=1.143;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:35:3:0,35 0/1:30,30:60:99:.:762,0,767:15,15,18,12 +chrX 3822940 . AGTGT A 1220.97 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=21.00;BaseQRankSum=-1.404;DP=70;ExcessHet=0.0000;FS=0.990;MQ=58.40;MQRankSum=-3.376;QD=21.00;ReadPosRankSum=0.111;SOR=0.709;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:35:3:0,35 0/1:28,32:60:99:.:1260,0,1079:15,13,15,17 +chrX 3823329 . T G 708 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=13.92;BaseQRankSum=1.986;DP=56;ExcessHet=0.0000;FS=2.316;MQ=58.30;MQRankSum=-0.809;QD=13.92;ReadPosRankSum=-0.089;SOR=0.818;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:35:3:0,35 0/1:26,27:53:99:.:738,0,628:14,12,12,15 +chrX 3825391 . C T 788 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=17.04;BaseQRankSum=-0.848;DP=52;ExcessHet=0.0000;FS=6.245;MQ=40.88;MQRankSum=-0.952;QD=17.04;ReadPosRankSum=0.647;SOR=0.577;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:35:3:0,35 0/1:17,31:48:99:.:818,0,402:11,6,14,17 +chrX 3825532 . T C 281 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=6.91;BaseQRankSum=0.899;DP=50;ExcessHet=0.0000;FS=4.820;MQ=49.74;MQRankSum=-5.113;QD=6.91;ReadPosRankSum=1.202;SOR=1.665;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:35:3:0,35 0/1:31,14:45:99:.:311,0,842:16,15,10,4 +chrX 3825560 . T G 1033 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=20.84;BaseQRankSum=-1.116;DP=58;ExcessHet=0.0000;FS=11.927;MQ=47.96;MQRankSum=5.142;QD=20.84;ReadPosRankSum=0.714;SOR=0.090;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:35:3:0,35 0/1:15,36:51:99:.:1063,0,352:12,3,18,18 +chrX 3825594 . T C 460 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=8.60;BaseQRankSum=-3.286;DP=60;ExcessHet=0.0000;FS=0.000;MQ=48.43;MQRankSum=-2.491;QD=8.60;ReadPosRankSum=-2.757;SOR=0.676;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:35:3:0,35 0/1:33,24:57:99:.:490,0,937:15,18,11,13 +chrX 3826402 . TA T 380.97 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=10.00;BaseQRankSum=0.465;DP=52;ExcessHet=0.0000;FS=1.204;MQ=58.53;MQRankSum=0.676;QD=10.00;ReadPosRankSum=-0.768;SOR=0.578;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:35:3:0,35 0/1:21,21:42:99:.:420,0,397:9,12,11,10 +chrX 3826732 . G GA 267.97 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=8.53;BaseQRankSum=1.465;DP=52;ExcessHet=0.0000;FS=0.000;MQ=57.21;MQRankSum=-2.254;QD=8.53;ReadPosRankSum=-0.111;SOR=0.724;VarDP=36 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:35:3:0,35 0/1:19,17:36:99:.:307,0,354:8,11,7,10 +chrX 3826992 . A G 844 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=17.48;BaseQRankSum=-0.141;DP=55;ExcessHet=0.0000;FS=5.913;MQ=50.92;MQRankSum=-6.503;QD=17.48;ReadPosRankSum=-0.561;SOR=1.011;VarDP=50 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:28:35:3:.:.:0,35 0|1:27,23:50:99:.:0|1:3826992_A_G:874,0,1034:3826992:11,16,14,9 +chrX 3827002 . G T 924 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=18.00;BaseQRankSum=-0.803;DP=58;ExcessHet=0.0000;FS=12.548;MQ=51.12;MQRankSum=-6.704;QD=18.00;ReadPosRankSum=-0.507;SOR=0.980;VarDP=53 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:28:35:3:.:.:0,35 0|1:27,26:53:99:.:0|1:3826992_A_G:954,0,1025:3826992:9,18,16,10 +chrX 3827240 . CCA C 1027.97 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=21.78;BaseQRankSum=1.479;DP=53;ExcessHet=0.0000;FS=5.913;MQ=53.22;MQRankSum=-5.351;QD=21.78;ReadPosRankSum=1.358;SOR=0.923;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:35:3:0,35 0/1:22,27:49:99:.:1067,0,794:9,13,16,11 +chrX 3827279 . T C 723 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=15.69;BaseQRankSum=-1.298;DP=54;ExcessHet=0.0000;FS=9.585;MQ=48.78;MQRankSum=-2.957;QD=15.69;ReadPosRankSum=0.432;SOR=0.101;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:35:3:0,35 0/1:19,29:48:99:.:753,0,469:3,16,12,17 +chrX 3827553 . A G 232 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=5.70;BaseQRankSum=1.415;DP=52;ExcessHet=0.0000;FS=0.000;MQ=53.83;MQRankSum=-6.115;QD=5.70;ReadPosRankSum=0.738;SOR=0.838;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:35:3:0,35 0/1:34,12:46:99:.:262,0,992:13,21,4,8 +chrX 3828208 . G A 84 . AC=1;AF=0.333;AN=3;AS_AltDP=5;AS_QD=3.45;BaseQRankSum=1.072;DP=37;ExcessHet=0.0000;FS=2.039;MQ=55.59;MQRankSum=-4.643;QD=3.45;ReadPosRankSum=-2.545;SOR=1.538;VarDP=33 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:28:35:3:.:.:0,35 0|1:28,5:33:99:.:0|1:3828208_G_A:114,0,1128:3828208:12,16,1,4 +chrX 3828212 . G T 83 . AC=1;AF=0.333;AN=3;AS_AltDP=5;AS_QD=3.53;BaseQRankSum=1.637;DP=35;ExcessHet=0.0000;FS=0.000;MQ=56.15;MQRankSum=-4.81;QD=3.53;ReadPosRankSum=-2.909;SOR=0.776;VarDP=32 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:28:35:3:.:.:0,35 0|1:27,5:32:99:.:0|1:3828208_G_A:113,0,1098:3828208:12,15,2,3 +chrX 3828517 . C T 2975 . AC=3;AF=1.00;AN=3;AS_AltDP=88;AS_QD=33.76;BaseQRankSum=3.177;DP=89;ExcessHet=0.0000;FS=0.000;MQ=56.32;MQRankSum=-0.727;QD=33.76;ReadPosRankSum=-0.45;SOR=0.557;VarDP=89 GT:AD:DP:GQ:PL:SB 1:1,26:27:99:874,0:1,0,15,11 1/1:0,62:62:99:2131,187,0:0,0,41,21 +chrX 3829044 . A G 620 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=12.26;BaseQRankSum=-2.06;DP=83;ExcessHet=0.0000;FS=1.087;MQ=50.32;MQRankSum=-6.014;QD=12.26;ReadPosRankSum=-1.914;SOR=0.961;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:99:28:0,438 0/1:27,26:53:99:.:650,0,768:16,11,17,9 +chrX 3829199 . G A 479 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=15.91;BaseQRankSum=0.865;DP=61;ExcessHet=0.0000;FS=0.000;MQ=41.07;MQRankSum=1.302;QD=15.91;ReadPosRankSum=-1.083;SOR=0.593;VarDP=32 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:99:28:0,438 0/1:14,18:32:99:.:509,0,355:5,9,7,11 +chrX 3829331 . C T 715 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=14.90;BaseQRankSum=1.516;DP=79;ExcessHet=0.0000;FS=0.000;MQ=48.59;MQRankSum=-2.793;QD=14.90;ReadPosRankSum=0.563;SOR=0.682;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:99:28:0,438 0/1:24,26:50:99:.:745,0,654:13,11,14,12 +chrX 3829573 . A G 392 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=32.46;DP=27;ExcessHet=0.0000;FS=0.000;MQ=36.39;QD=32.46;SOR=1.179;VarDP=13 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,13:13:99:.:422,0:0,0,8,5 0/0:.:20:25:14:0,25,367 +chrX 3830389 . C T 95 . AC=2;AF=0.667;AN=3;AS_AltDP=4;AS_QD=31.25;DP=5;ExcessHet=0.0000;FS=0.000;MQ=26.51;QD=31.25;SOR=3.258;VarDP=4 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:2:35:1:0,35 1/1:0,4:4:12:.:125,12,0:0,0,0,4 +chrX 3831318 . A T 245 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=7.05;BaseQRankSum=1.106;DP=40;ExcessHet=0.0000;FS=0.000;MQ=45.22;MQRankSum=-2.094;QD=7.05;ReadPosRankSum=-0.289;SOR=0.627;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:2:35:1:0,35 0/1:27,12:39:99:.:275,0,717:13,14,6,6 +chrX 3832494 . T C 422 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=11.02;BaseQRankSum=-1.921;DP=44;ExcessHet=0.0000;FS=0.000;MQ=39.44;MQRankSum=-0.767;QD=11.02;ReadPosRankSum=-0.393;SOR=0.624;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:3:35:1:0,35 0/1:22,19:41:99:.:452,0,592:10,12,9,10 +chrX 3836754 . TTTTG T 185.97 . AC=2;AF=0.667;AN=3;AS_AltDP=5;AS_QD=27.86;DP=6;ExcessHet=0.0000;FS=0.000;MQ=25.00;QD=45.00;SOR=3.611;VarDP=5 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:2:20:1:0,20 1/1:0,5:5:15:.:225,15,0:0,0,5,0 +chrX 3838351 . GA G 211.97 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=19.31;BaseQRankSum=-0.53;DP=21;ExcessHet=0.0000;FS=0.000;MQ=37.09;MQRankSum=1.465;QD=19.31;ReadPosRankSum=1.593;SOR=0.446;VarDP=13 GT:AD:DP:GQ:MIN_DP:PL:SB 1:2,11:13:99:.:251,0:2,0,8,3 0/0:.:18:21:8:0,21,223 +chrX 3838530 . C A 483 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=9.00;BaseQRankSum=0.709;DP=77;ExcessHet=0.0000;FS=10.110;MQ=32.76;MQRankSum=2.72;QD=9.00;ReadPosRankSum=-0.402;SOR=2.015;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:20:99:20:0,135 0/1:35,22:57:99:.:513,0,849:16,19,5,17 +chrX 3838813 . T C 184 . AC=3;AF=1.00;AN=3;AS_AltDP=7;AS_QD=30.57;DP=8;ExcessHet=0.0000;FS=0.000;MQ=25.83;QD=30.57;SOR=4.174;VarDP=7 GT:AD:DP:GQ:PL:SB 1:0,5:5:99:154,0:0,0,5,0 1/1:0,2:2:6:60,6,0:0,0,2,0 +chrX 3843114 . C T 227 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=10.28;BaseQRankSum=-2.369;DP=29;ExcessHet=0.0000;FS=0.000;MQ=42.73;MQRankSum=-0.593;QD=10.28;ReadPosRankSum=0.329;SOR=0.653;VarDP=25 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:1:25:1:0,25 0/1:14,11:25:99:.:257,0,400:5,9,4,7 +chrX 3843723 . G A 133 . AC=2;AF=0.667;AN=3;AS_AltDP=5;AS_QD=32.60;DP=7;ExcessHet=0.0000;FS=0.000;MQ=35.71;QD=32.60;SOR=1.022;VarDP=5 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:1:25:1:0,25 1/1:0,5:5:15:.:163,15,0:0,0,2,3 +chrX 3843815 . G A 119 . AC=2;AF=0.667;AN=3;AS_AltDP=5;AS_QD=29.80;DP=6;ExcessHet=0.0000;FS=0.000;MQ=28.64;QD=29.80;SOR=1.981;VarDP=5 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:1:25:1:0,25 1/1:0,5:5:15:.:149,15,0:0,0,4,1 +chrX 3848190 . CTGTTTT C 319.97 . AC=1;AF=0.333;AN=3;AS_AltDP=9;AS_QD=28.32;DP=18;ExcessHet=0.0000;FS=0.000;MQ=25.00;QD=39.89;SOR=1.402;VarDP=9 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,9:9:99:.:359,0:0,0,6,3 0/0:.:16:21:8:0,21,233 +chrX 3848772 . C G 30 . AC=2;AF=0.667;AN=3;AS_AltDP=2;AS_QD=30.00;DP=3;ExcessHet=0.0000;FS=0.000;MQ=25.00;QD=30.00;SOR=2.303;VarDP=2 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:1:25:1:0,25 1/1:0,2:2:6:.:60,6,0:0,0,0,2 +chrX 3853313 . G A 239 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=7.08;BaseQRankSum=2.177;DP=39;ExcessHet=0.0000;FS=31.330;MQ=35.14;MQRankSum=1.724;QD=7.08;ReadPosRankSum=-2.094;SOR=4.973;VarDP=38 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:2:20:1:0,20 0/1:27,11:38:99:.:269,0,639:16,11,0,11 +chrX 3872369 . TGTTA T 272.97 . AC=1;AF=0.333;AN=3;AS_AltDP=9;AS_QD=10.06;BaseQRankSum=-0.222;DP=32;ExcessHet=0.0000;FS=1.594;MQ=31.17;MQRankSum=0.082;QD=10.06;ReadPosRankSum=-0.131;SOR=0.668;VarDP=31 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:1:25:1:0,25 0/1:22,9:31:99:.:312,0,897:13,9,4,5 +chrX 3875154 . A G 99 . AC=2;AF=0.667;AN=3;AS_AltDP=5;AS_QD=25.80;DP=6;ExcessHet=0.0000;FS=0.000;MQ=25.00;QD=25.80;SOR=3.611;VarDP=5 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:1:25:1:0,25 1/1:0,5:5:15:.:129,15,0:0,0,5,0 +chrX 3878518 . G A 297 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=29.73;DP=26;ExcessHet=0.0000;FS=0.000;MQ=25.00;QD=29.73;SOR=4.977;VarDP=11 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,11:11:99:.:327,0:0,0,0,11 0/0:.:14:21:11:0,21,315 +chrX 3878575 . T C 238 . AC=2;AF=0.667;AN=3;AS_AltDP=9;AS_QD=29.78;DP=10;ExcessHet=0.0000;FS=0.000;MQ=25.00;QD=29.78;SOR=4.615;VarDP=9 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:2:35:1:0,35 1/1:0,9:9:27:.:268,27,0:0,0,0,9 +chrX 3882541 . G C 44 . AC=1;AF=0.333;AN=3;AS_AltDP=4;AS_QD=4.93;BaseQRankSum=1.215;DP=16;ExcessHet=0.0000;FS=0.000;MQ=33.84;MQRankSum=-2.337;QD=4.93;ReadPosRankSum=-0.914;SOR=0.160;VarDP=15 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:1:25:1:0,25 0/1:11,4:15:74:.:74,0,277:11,0,4,0 +chrX 3902294 . C T 138 . AC=1;AF=0.500;AN=2;AS_AltDP=8;AS_QD=6.22;BaseQRankSum=0.856;DP=29;ExcessHet=0.0000;FS=5.444;MQ=31.41;MQRankSum=1.741;QD=6.22;ReadPosRankSum=2.418;SOR=2.187;VarDP=27 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB .:.:1:0:1:.:.:0,0 0|1:19,8:27:99:.:0|1:3902294_C_T:168,0,546:3902294:15,4,8,0 +chrX 3905081 . A G 232 . AC=1;AF=0.500;AN=2;AS_AltDP=10;AS_QD=10.48;BaseQRankSum=0.898;DP=25;ExcessHet=0.0000;FS=4.224;MQ=39.06;MQRankSum=-3.823;QD=10.48;ReadPosRankSum=1.443;SOR=0.170;VarDP=25 GT:AD:DP:GQ:MIN_DP:PL:SB .:.:0:0:0:0,0 0/1:15,10:25:99:.:262,0,432:12,3,6,4 +chrX 3907200 . C G 112 . AC=1;AF=0.333;AN=3;AS_AltDP=6;AS_QD=6.45;BaseQRankSum=0.961;DP=24;ExcessHet=0.0000;FS=0.000;MQ=39.51;MQRankSum=-0.559;QD=6.45;ReadPosRankSum=0.664;SOR=0.157;VarDP=22 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:1:25:1:0,25 0/1:16,6:22:99:.:142,0,460:0,16,0,6 +chrX 3913780 . CT C 41.97 . AC=1;AF=0.333;AN=3;AS_AltDP=2;AS_QD=27.00;BaseQRankSum=0;DP=4;ExcessHet=0.0000;FS=0.000;MQ=25.00;MQRankSum=0;QD=27.00;ReadPosRankSum=0;SOR=1.179;VarDP=3 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:4:35:1:.:.:0,35 0|1:1,2:3:36:.:0|1:3913780_CT_C:81,0,36:3913780:1,0,2,0 +chrX 3913785 . T C 51 . AC=1;AF=0.333;AN=3;AS_AltDP=2;AS_QD=27.00;BaseQRankSum=0;DP=4;ExcessHet=0.0000;FS=0.000;MQ=25.00;MQRankSum=0;QD=27.00;ReadPosRankSum=0;SOR=1.179;VarDP=3 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:4:35:1:.:.:0,35 0|1:1,2:3:36:.:0|1:3913780_CT_C:81,0,36:3913780:1,0,2,0 +chrX 3927061 . C T 238 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=8.12;BaseQRankSum=-2.929;DP=35;ExcessHet=0.0000;FS=3.654;MQ=32.57;MQRankSum=-0.309;QD=8.12;ReadPosRankSum=-1.364;SOR=1.501;VarDP=33 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:1:35:1:0,35 0/1:20,13:33:99:.:268,0,531:6,14,2,11 +chrX 3928320 . C T 97 . AC=1;AF=0.333;AN=3;AS_AltDP=6;AS_QD=7.47;BaseQRankSum=0;DP=18;ExcessHet=0.0000;FS=0.000;MQ=25.00;MQRankSum=0;QD=7.47;ReadPosRankSum=-0.252;SOR=0.293;VarDP=17 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:1:35:1:0,35 0/1:11,6:17:99:.:127,0,276:0,11,0,6 +chrX 3933789 . T A 261 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=9.39;BaseQRankSum=1.563;DP=33;ExcessHet=0.0000;FS=15.375;MQ=31.12;MQRankSum=-2.836;QD=9.39;ReadPosRankSum=-1.181;SOR=2.061;VarDP=31 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:1:25:1:0,25 0/1:18,13:31:99:.:291,0,462:12,6,3,10 +chrX 3937738 . T C 663 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=13.33;BaseQRankSum=-0.589;DP=56;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.33;ReadPosRankSum=0.889;SOR=0.708;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:1:25:1:0,25 0/1:27,25:52:99:.:693,0,757:13,14,13,12 +chrX 3938153 . AGT A 335.97 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=10.42;BaseQRankSum=-2.574;DP=46;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=10.42;ReadPosRankSum=-0.527;SOR=0.871;VarDP=36 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:1:25:1:0,25 0/1:23,13:36:99:.:375,0,705:10,13,5,8 +chrX 3939076 . T C 2541 . AC=3;AF=1.00;AN=3;AS_AltDP=80;AS_QD=32.14;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.14;SOR=1.031;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,37:37:99:1186,0:0,0,16,21 1/1:0,43:43:99:1385,129,0:0,0,30,13 +chrX 3940550 . A T 692 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=12.24;BaseQRankSum=-1.446;DP=88;ExcessHet=0.0000;FS=3.576;MQ=60.00;MQRankSum=0;QD=12.24;ReadPosRankSum=-1.709;SOR=0.615;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,481 0/1:31,28:59:99:.:722,0,861:13,18,15,13 +chrX 3941333 . A AT 189.97 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=8.48;BaseQRankSum=-0.507;DP=72;ExcessHet=0.0000;FS=9.061;MQ=59.62;MQRankSum=0.497;QD=8.48;ReadPosRankSum=0.302;SOR=0.297;VarDP=27 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,481 0/1:10,17:27:99:.:229,0,109:2,8,9,8 +chrX 3942191 . A AT 196.97 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=7.61;BaseQRankSum=-1.346;DP=84;ExcessHet=0.0000;FS=19.167;MQ=59.47;MQRankSum=0;QD=7.61;ReadPosRankSum=0.692;SOR=1.936;VarDP=31 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,481 0/1:15,16:31:99:.:236,0,251:11,4,4,12 +chrX 3942659 . CTTCTTTCTTTCT CTTCTTTCT,C 879.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=18,9;AS_QD=33.32,30.80;BaseQRankSum=-0.428;DP=68;ExcessHet=0.0000;FS=4.929;MQ=59.75;MQRankSum=0;QD=32.82;ReadPosRankSum=-1.195;SOR=1.646;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,12,0:12:99:440,0,440:0,0,3,9 1/2:1,6,9:16:99:479,286,287,171,0,418:1,0,5,10 +chrX 3945842 . A G 923 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=14.44;BaseQRankSum=1.176;DP=98;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.44;ReadPosRankSum=-0.892;SOR=0.793;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:90:31:0,90 0/1:32,34:66:99:.:953,0,854:19,13,21,13 +chrX 3948080 . A G 726 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=16.09;BaseQRankSum=-1.758;DP=79;ExcessHet=0.0000;FS=4.201;MQ=60.00;MQRankSum=0;QD=16.09;ReadPosRankSum=-1.012;SOR=0.690;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:90:31:0,90 0/1:20,27:47:99:.:756,0,554:12,8,12,15 +chrX 3948694 . A C 646 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=13.00;BaseQRankSum=-2.073;DP=85;ExcessHet=0.0000;FS=2.415;MQ=60.00;MQRankSum=0;QD=13.00;ReadPosRankSum=-1.423;SOR=1.161;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:90:31:0,90 0/1:24,28:52:99:.:676,0,634:11,13,10,18 +chrX 3949890 . T G 299 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=10.61;BaseQRankSum=-0.752;DP=62;ExcessHet=0.0000;FS=3.256;MQ=55.97;MQRankSum=-4.02;QD=10.61;ReadPosRankSum=0.701;SOR=1.071;VarDP=31 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:90:31:0,90 0/1:18,13:31:99:.:329,0,498:10,8,5,8 +chrX 3950226 . AT A 46.97 . AC=1;AF=0.333;AN=3;AS_AltDP=7;AS_QD=3.58;BaseQRankSum=1.216;DP=62;ExcessHet=0.0000;FS=4.129;MQ=59.18;MQRankSum=0.733;QD=3.58;ReadPosRankSum=0.095;SOR=1.571;VarDP=24 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:90:31:0,90 0/1:17,7:24:86:.:86,0,295:8,9,5,2 +chrX 3951067 . T A 745 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=15.20;BaseQRankSum=-1.983;DP=82;ExcessHet=0.0000;FS=10.488;MQ=60.00;MQRankSum=0;QD=15.20;ReadPosRankSum=1.103;SOR=0.773;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:90:31:0,90 0/1:22,29:51:99:.:775,0,584:7,15,17,12 +chrX 3951468 . AT A,ATTT 479.97 . AC=1,0;AF=0.333,0.00;AN=3;AS_AltDP=24,2;AS_QD=11.04,0.00;BaseQRankSum=1.572;DP=89;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=10.59;ReadPosRankSum=0.712;SOR=0.600;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:90:31:0,90,90 0/1:23,24,2:49:99:.:519,0,573,640,584,1693:13,10,14,12 +chrX 3952378 . T C 2207 . AC=2;AF=0.667;AN=3;AS_AltDP=70;AS_QD=31.96;DP=102;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.96;SOR=1.011;VarDP=70 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:90:31:0,90 1/1:0,70:70:99:.:2237,210,0:0,0,40,30 +chrX 3954158 . G GA 393.97 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=9.62;BaseQRankSum=0.781;DP=81;ExcessHet=0.0000;FS=11.459;MQ=60.00;MQRankSum=0;QD=9.62;ReadPosRankSum=0.902;SOR=1.622;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:90:31:0,90 0/1:25,20:45:99:.:433,0,580:15,10,6,14 +chrX 3955114 . C CA,CAAA 284.97 . AC=1,0;AF=0.333,0.00;AN=3;AS_AltDP=10,5;AS_QD=17.05,15.50;BaseQRankSum=0.937;DP=84;ExcessHet=0.0000;FS=0.000;MQ=59.41;MQRankSum=-1.057;QD=13.50;ReadPosRankSum=-1.045;SOR=0.593;VarDP=24 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:90:31:0,90,90 0/1:9,10,5:24:64:.:324,0,89,107,64,466:7,2,11,4 +chrX 3955320 . A AAAAT 845.97 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=19.24;BaseQRankSum=0.32;DP=95;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=19.24;ReadPosRankSum=0.209;SOR=0.545;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:90:31:0,90 0/1:23,23:46:99:.:885,0,852:13,10,12,11 +chrX 3957572 . CCG C 1312.97 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=22.92;BaseQRankSum=-2.183;DP=94;ExcessHet=0.0000;FS=3.617;MQ=59.70;MQRankSum=0;QD=22.92;ReadPosRankSum=-1.596;SOR=0.790;VarDP=59 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:31:90:31:.:.:0,90 0|1:25,34:59:99:.:0|1:3957572_CCG_C:1352,0,937:3957572:11,14,19,15 +chrX 3957575 . T TTC 1312.97 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=22.92;BaseQRankSum=-1.135;DP=93;ExcessHet=0.0000;FS=3.617;MQ=59.70;MQRankSum=0;QD=22.92;ReadPosRankSum=-1.443;SOR=0.790;VarDP=59 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:31:90:31:.:.:0,90 0|1:25,34:59:99:.:0|1:3957572_CCG_C:1352,0,937:3957572:11,14,19,15 +chrX 3958241 . TTGTG T,TTGTGTGTGTG 387.97 . AC=1,0;AF=0.333,0.00;AN=3;AS_AltDP=12,0;AS_QD=14.23,0.00;BaseQRankSum=0.065;DP=80;ExcessHet=0.0000;FS=8.497;MQ=59.45;MQRankSum=-0.294;QD=14.23;ReadPosRankSum=0.996;SOR=1.934;VarDP=30 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:90:31:0,90,90 0/1:18,12,0:30:99:.:427,0,779,476,697,1162:8,10,9,3 +chrX 3958303 . A G 775 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=15.48;BaseQRankSum=-1.186;DP=83;ExcessHet=0.0000;FS=2.453;MQ=60.00;MQRankSum=0;QD=15.48;ReadPosRankSum=0.732;SOR=0.957;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:90:31:0,90 0/1:19,33:52:99:.:805,0,476:9,10,19,14 +chrX 3958524 . T C 555 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=10.64;BaseQRankSum=-1.63;DP=86;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=10.64;ReadPosRankSum=1.468;SOR=0.791;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:90:31:0,90 0/1:31,24:55:99:.:585,0,837:15,16,11,13 +chrX 3959269 . T C 679 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=13.38;BaseQRankSum=-1.022;DP=91;ExcessHet=0.0000;FS=5.783;MQ=60.00;MQRankSum=0;QD=13.38;ReadPosRankSum=0.792;SOR=1.550;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:90:31:0,90 0/1:26,27:53:99:.:709,0,705:14,12,19,8 +chrX 3960039 . G GT 844.97 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=16.37;BaseQRankSum=-1.798;DP=86;ExcessHet=0.0000;FS=6.042;MQ=60.00;MQRankSum=0;QD=16.37;ReadPosRankSum=-0.165;SOR=0.223;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:90:31:0,90 0/1:26,28:54:99:.:884,0,807:20,6,17,11 +chrX 3960417 . C CT 442.97 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=9.09;BaseQRankSum=2.09;DP=90;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=9.09;ReadPosRankSum=1.368;SOR=0.816;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:90:31:0,90 0/1:29,24:53:99:.:482,0,633:16,13,14,10 +chrX 3961515 . A T 595 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=12.25;BaseQRankSum=0.114;DP=86;ExcessHet=0.0000;FS=5.732;MQ=60.00;MQRankSum=0;QD=12.25;ReadPosRankSum=-2.312;SOR=0.551;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:90:31:0,90 0/1:27,24:51:99:.:625,0,736:10,17,13,11 +chrX 3961602 . A AACATACT 865.97 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=21.05;BaseQRankSum=-1.771;DP=80;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=21.05;ReadPosRankSum=0.475;SOR=0.776;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:90:31:0,90 0/1:20,23:43:99:.:905,0,771:10,10,12,11 +chrX 3961644 . G A 554 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=11.68;BaseQRankSum=-0.671;DP=81;ExcessHet=0.0000;FS=5.913;MQ=60.00;MQRankSum=0;QD=11.68;ReadPosRankSum=-1.957;SOR=1.011;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:90:31:0,90 0/1:27,23:50:99:.:584,0,749:16,11,9,14 +chrX 3962140 . A AATAAACTT 971.97 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=19.82;BaseQRankSum=-0.898;DP=83;ExcessHet=0.0000;FS=5.738;MQ=60.00;MQRankSum=0;QD=19.82;ReadPosRankSum=0.556;SOR=1.108;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:90:31:0,90 0/1:25,26:51:99:.:1011,0,958:11,14,16,10 +chrX 3962788 . G GA 292.97 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=8.74;BaseQRankSum=0.303;DP=86;ExcessHet=0.0000;FS=4.913;MQ=58.41;MQRankSum=1.26;QD=8.74;ReadPosRankSum=0.547;SOR=0.235;VarDP=38 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:90:31:0,90 0/1:22,16:38:99:.:332,0,532:6,16,7,9 +chrX 3963324 . G C 747 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=16.53;BaseQRankSum=-1.68;DP=80;ExcessHet=0.0000;FS=1.134;MQ=60.00;MQRankSum=0;QD=16.53;ReadPosRankSum=0.932;SOR=0.757;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:90:31:0,90 0/1:19,28:47:99:.:777,0,520:9,10,15,13 +chrX 3963353 . A T 777 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=14.16;BaseQRankSum=-0.623;DP=90;ExcessHet=0.0000;FS=1.012;MQ=60.00;MQRankSum=0;QD=14.16;ReadPosRankSum=0.632;SOR=0.507;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:90:31:0,90 0/1:27,30:57:99:.:807,0,738:12,15,15,15 +chrX 3963465 . G A 429 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=10.43;BaseQRankSum=2.282;DP=77;ExcessHet=0.0000;FS=1.186;MQ=60.00;MQRankSum=0;QD=10.43;ReadPosRankSum=2.183;SOR=0.902;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:90:31:0,90 0/1:27,17:44:99:.:459,0,736:11,16,6,11 +chrX 3963556 . CT C,CTT 111.97 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=2,10;AS_QD=0.00,5.81;BaseQRankSum=-1.344;DP=69;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=5.39;ReadPosRankSum=0.987;SOR=0.593;VarDP=28 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:90:31:0,90,90 0/2:16,2,10:28:99:.:151,185,646,0,303,330:5,11,4,8 +chrX 3963594 . A C 144 . AC=1;AF=0.333;AN=3;AS_AltDP=8;AS_QD=6.21;BaseQRankSum=-0.964;DP=61;ExcessHet=0.0000;FS=12.018;MQ=60.00;MQRankSum=0;QD=6.21;ReadPosRankSum=1.451;SOR=3.684;VarDP=28 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:90:31:0,90 0/1:20,8:28:99:.:174,0,591:8,12,0,8 +chrX 3963903 . G C 725 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=15.73;BaseQRankSum=-0.081;DP=80;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=15.73;ReadPosRankSum=-0.443;SOR=0.797;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:90:31:0,90 0/1:19,29:48:99:.:755,0,452:10,9,16,13 +chrX 3964393 . T C 669 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=13.98;BaseQRankSum=-0.248;DP=81;ExcessHet=0.0000;FS=3.899;MQ=60.00;MQRankSum=0;QD=13.98;ReadPosRankSum=1.026;SOR=0.597;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:90:31:0,90 0/1:22,28:50:99:.:699,0,576:13,9,13,15 +chrX 3965317 . C G 730 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=17.67;BaseQRankSum=1.615;DP=76;ExcessHet=0.0000;FS=2.907;MQ=60.00;MQRankSum=0;QD=17.67;ReadPosRankSum=0.716;SOR=0.334;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:90:31:0,90 0/1:16,27:43:99:.:760,0,362:12,4,17,10 +chrX 3967140 . G A 733 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=30.52;DP=36;ExcessHet=0.0000;FS=0.000;MQ=45.54;QD=30.52;SOR=1.609;VarDP=25 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,25:25:99:.:763,0:0,0,17,8 0/0:.:18:21:11:0,21,315 +chrX 3969776 . G T 991 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=13.99;BaseQRankSum=1.462;DP=74;ExcessHet=0.0000;FS=0.899;MQ=60.00;MQRankSum=0;QD=13.99;ReadPosRankSum=0.353;SOR=0.538;VarDP=73 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:16:35:1:0,35 0/1:36,37:73:99:.:1021,0,917:22,14,21,16 +chrX 3971091 . G A 529 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=9.47;BaseQRankSum=2.05;DP=64;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=9.47;ReadPosRankSum=-0.549;SOR=0.627;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:16:35:1:0,35 0/1:37,22:59:99:.:559,0,923:13,24,8,14 +chrX 3971804 . C T 549 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=10.53;BaseQRankSum=1.427;DP=60;ExcessHet=0.0000;FS=7.561;MQ=58.77;MQRankSum=0.653;QD=10.53;ReadPosRankSum=0.232;SOR=1.588;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:16:35:1:0,35 0/1:33,22:55:99:.:579,0,902:16,17,15,7 +chrX 3972813 . G T 571 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=10.19;BaseQRankSum=1.123;DP=62;ExcessHet=0.0000;FS=12.229;MQ=60.00;MQRankSum=0;QD=10.19;ReadPosRankSum=-0.987;SOR=2.004;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:16:35:1:0,35 0/1:36,23:59:99:.:601,0,1004:19,17,6,17 +chrX 3973902 . G C 873 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=20.52;BaseQRankSum=-1.282;DP=46;ExcessHet=0.0000;FS=6.473;MQ=59.10;MQRankSum=-1.955;QD=20.52;ReadPosRankSum=2.292;SOR=1.322;VarDP=44 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:16:35:1:.:.:0,35 0|1:21,23:44:99:.:0|1:3973902_G_C:903,0,802:3973902:12,9,8,15 +chrX 3973904 . C G 873 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=20.52;BaseQRankSum=-1.195;DP=47;ExcessHet=0.0000;FS=6.473;MQ=59.39;MQRankSum=-1.955;QD=20.52;ReadPosRankSum=2.339;SOR=1.322;VarDP=44 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:16:35:1:.:.:0,35 0|1:21,23:44:99:.:0|1:3973902_G_C:903,0,802:3973902:12,9,8,15 +chrX 3974058 . G A 683 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=13.71;BaseQRankSum=-1.462;DP=55;ExcessHet=0.0000;FS=3.775;MQ=60.00;MQRankSum=0;QD=13.71;ReadPosRankSum=0.863;SOR=0.612;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:16:35:1:0,35 0/1:24,28:52:99:.:713,0,619:10,14,15,13 +chrX 3975230 . G A 696 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=11.90;BaseQRankSum=1.284;DP=65;ExcessHet=0.0000;FS=2.137;MQ=59.82;MQRankSum=0;QD=11.90;ReadPosRankSum=1.191;SOR=0.581;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:16:35:1:0,35 0/1:34,27:61:99:.:726,0,904:15,19,14,13 +chrX 3977029 . T C 952 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=15.59;BaseQRankSum=-1.479;DP=66;ExcessHet=0.0000;FS=8.669;MQ=60.00;MQRankSum=0;QD=15.59;ReadPosRankSum=0.41;SOR=1.281;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:16:35:1:0,35 0/1:27,36:63:99:.:982,0,714:15,12,13,23 +chrX 3977962 . C T 517 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=12.43;BaseQRankSum=-1.838;DP=49;ExcessHet=0.0000;FS=4.185;MQ=60.00;MQRankSum=0;QD=12.43;ReadPosRankSum=1.222;SOR=1.185;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:16:35:1:0,35 0/1:23,21:44:99:.:547,0,657:12,11,8,13 +chrX 3978818 . T TTTTCTTTCTTTC 572.97 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=22.67;BaseQRankSum=-0.697;DP=54;ExcessHet=0.0000;FS=4.075;MQ=59.86;MQRankSum=-0.754;QD=22.67;ReadPosRankSum=-0.519;SOR=1.755;VarDP=27 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:16:35:1:0,35 0/1:11,16:27:99:.:612,0,389:4,7,3,13 +chrX 3978867 . C CCTTT 317.97 . AC=1;AF=0.333;AN=3;AS_AltDP=9;AS_QD=22.31;BaseQRankSum=1.009;DP=31;ExcessHet=0.0000;FS=2.596;MQ=59.15;MQRankSum=0.776;QD=22.31;ReadPosRankSum=-0.31;SOR=1.802;VarDP=16 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:16:35:1:0,35 0/1:7,9:16:99:.:357,0,267:2,5,1,8 +chrX 3978950 . CTTCTTTCTTT C 406.97 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=15.93;BaseQRankSum=-0.523;DP=37;ExcessHet=0.0000;FS=0.000;MQ=59.50;MQRankSum=0;QD=15.93;ReadPosRankSum=1.827;SOR=0.495;VarDP=28 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:16:35:1:0,35 0/1:16,12:28:99:.:446,0,579:7,9,6,6 +chrX 3980079 . G A 742 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=14.57;BaseQRankSum=-0.698;DP=56;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.57;ReadPosRankSum=-0.027;SOR=0.724;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:16:35:1:0,35 0/1:25,28:53:99:.:772,0,687:10,15,11,17 +chrX 3980604 . A T 1223 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=21.60;BaseQRankSum=0.069;DP=66;ExcessHet=0.0000;FS=9.553;MQ=60.00;MQRankSum=0;QD=21.60;ReadPosRankSum=-0.243;SOR=0.954;VarDP=58 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:16:35:1:.:.:0,35 0|1:25,33:58:99:.:0|1:3980604_A_T:1253,0,896:3980604:9,16,20,13 +chrX 3980605 . A T 1223 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=21.60;BaseQRankSum=0.141;DP=67;ExcessHet=0.0000;FS=9.553;MQ=60.00;MQRankSum=0;QD=21.60;ReadPosRankSum=-0.501;SOR=0.954;VarDP=58 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:16:35:1:.:.:0,35 0|1:25,33:58:99:.:0|1:3980604_A_T:1253,0,896:3980604:9,16,20,13 +chrX 3981498 . AT A 56.97 . AC=1;AF=0.333;AN=3;AS_AltDP=9;AS_QD=3.31;BaseQRankSum=0;DP=53;ExcessHet=0.0000;FS=0.000;MQ=59.36;MQRankSum=0;QD=3.31;ReadPosRankSum=1.03;SOR=0.903;VarDP=29 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:16:35:1:0,35 0/1:20,9:29:96:.:96,0,300:8,12,3,6 +chrX 3982432 . G A 681 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=11.66;BaseQRankSum=-0.326;DP=63;ExcessHet=0.0000;FS=0.968;MQ=60.00;MQRankSum=0;QD=11.66;ReadPosRankSum=-0.753;SOR=0.551;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:16:35:1:0,35 0/1:33,28:61:99:.:711,0,900:14,19,13,15 +chrX 3985618 . G A 827 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=15.04;BaseQRankSum=0.659;DP=59;ExcessHet=0.0000;FS=3.654;MQ=60.00;MQRankSum=0;QD=15.04;ReadPosRankSum=1.258;SOR=0.953;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:16:35:1:0,35 0/1:26,31:57:99:.:857,0,692:12,14,18,13 +chrX 3986368 . T A 745 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=15.20;BaseQRankSum=2.2;DP=57;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=15.20;ReadPosRankSum=0.453;SOR=0.748;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:16:35:1:0,35 0/1:24,27:51:99:.:775,0,621:11,13,12,15 +chrX 3987609 . G A 637 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=13.61;BaseQRankSum=-1.353;DP=52;ExcessHet=0.0000;FS=2.463;MQ=60.00;MQRankSum=0;QD=13.61;ReadPosRankSum=-1.95;SOR=0.374;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:16:35:1:0,35 0/1:24,25:49:99:.:667,0,675:9,15,12,13 +chrX 3987625 . A AT 280.97 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=9.70;BaseQRankSum=-1.35;DP=44;ExcessHet=0.0000;FS=10.736;MQ=60.00;MQRankSum=0;QD=9.70;ReadPosRankSum=-2.811;SOR=1.629;VarDP=33 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:16:35:1:0,35 0/1:16,17:33:99:.:320,0,315:6,10,12,5 +chrX 3988507 . A G 446 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=9.92;BaseQRankSum=-3.449;DP=50;ExcessHet=0.0000;FS=10.982;MQ=60.00;MQRankSum=0;QD=9.92;ReadPosRankSum=-0.457;SOR=1.358;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:16:35:1:0,35 0/1:27,21:48:99:.:476,0,795:10,17,14,7 +chrX 3991969 . T C 627 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=9.52;BaseQRankSum=1.226;DP=71;ExcessHet=0.0000;FS=3.489;MQ=59.78;MQRankSum=0.808;QD=9.52;ReadPosRankSum=0.768;SOR=0.368;VarDP=69 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:16:35:1:0,35 0/1:43,26:69:99:.:657,0,1152:29,14,15,11 +chrX 3993048 . C T 424 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=13.35;BaseQRankSum=1.396;DP=36;ExcessHet=0.0000;FS=5.368;MQ=60.00;MQRankSum=0;QD=13.35;ReadPosRankSum=0;SOR=0.169;VarDP=34 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:16:35:1:0,35 0/1:18,16:34:99:.:454,0,503:5,13,8,8 +chrX 3993155 . A G 421 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=12.89;BaseQRankSum=0.975;DP=38;ExcessHet=0.0000;FS=5.023;MQ=60.00;MQRankSum=0;QD=12.89;ReadPosRankSum=1.441;SOR=1.109;VarDP=35 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:16:35:1:0,35 0/1:19,16:35:99:.:451,0,545:8,11,10,6 +chrX 3993750 . G T 510 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=12.00;BaseQRankSum=0.601;DP=48;ExcessHet=0.0000;FS=1.143;MQ=60.00;MQRankSum=0;QD=12.00;ReadPosRankSum=1.143;SOR=0.495;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:16:35:1:0,35 0/1:25,20:45:99:.:540,0,692:11,14,10,10 +chrX 3994767 . A G 538 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=9.96;BaseQRankSum=-3.146;DP=61;ExcessHet=0.0000;FS=5.333;MQ=60.00;MQRankSum=0;QD=9.96;ReadPosRankSum=1.384;SOR=0.719;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:16:35:1:0,35 0/1:32,25:57:99:.:568,0,942:19,13,11,14 +chrX 3995036 . TTATTATATTATCATATAATATAATATATTCTATATTATATTATTATATAATATAATATATTCTATATTATATTATTATATAATATAATATATTCTATATTATATTATTATATAATATAATATATTCTATATTATATTATTATATAATATAATATATTCTA T 136.97 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=4.40;BaseQRankSum=-0.965;DP=41;ExcessHet=0.0000;FS=1.382;MQ=56.97;MQRankSum=1.476;QD=4.40;ReadPosRankSum=-0.224;SOR=0.434;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:16:35:1:0,35 0/1:29,11:40:99:.:176,0,910:11,18,5,6 +chrX 3995981 . ATATAATATATATTCTATATTATAT A 85.97 . AC=1;AF=0.333;AN=3;AS_AltDP=3;AS_QD=25.00;DP=41;ExcessHet=0.0000;FS=3.979;MQ=42.60;MQRankSum=-1.645;QD=25.00;SOR=0.859;VarDP=5 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:11:70:11:.:.:0,70 0|1:2,3:5:70:.:0|1:3995981_ATATAATATATATTCTATATTATAT_A:125,0,70:3995981:2,0,1,2 +chrX 3996013 . T TA 50.97 . AC=1;AF=0.333;AN=3;AS_AltDP=5;AS_QD=11.25;BaseQRankSum=0;DP=18;ExcessHet=0.0000;FS=7.068;MQ=33.68;MQRankSum=-0.39;QD=11.25;ReadPosRankSum=2.369;SOR=0.610;VarDP=8 GT:AD:DP:GQ:MIN_DP:PL:SB 1:3,5:8:90:.:90,0:3,0,2,3 0/0:.:7:21:7:0,21,223 +chrX 3996015 . T TATAA 50.97 . AC=1;AF=0.333;AN=3;AS_AltDP=5;AS_QD=11.25;BaseQRankSum=0;DP=16;ExcessHet=0.0000;FS=7.068;MQ=32.65;MQRankSum=-0.39;QD=11.25;ReadPosRankSum=1.93;SOR=0.610;VarDP=8 GT:AD:DP:GQ:MIN_DP:PL:SB 1:3,5:8:90:.:90,0:3,0,2,3 0/0:.:7:21:7:0,21,223 +chrX 3996048 . C A 84 . AC=1;AF=0.333;AN=3;AS_AltDP=3;AS_QD=16.29;BaseQRankSum=0;DP=15;ExcessHet=0.0000;FS=8.451;MQ=46.07;MQRankSum=-1.902;QD=16.29;ReadPosRankSum=-1.006;SOR=0.829;VarDP=7 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:7:99:7:.:.:0,104 0|1:4,3:7:99:.:0|1:3995981_ATATAATATATATTCTATATTATAT_A:114,0,137:3995981:4,0,1,2 +chrX 3996087 . ATATAATATATATTCTATATTATATTATAATATAATATATATTCTATATTATAT A 85.97 . AC=1;AF=0.333;AN=3;AS_AltDP=4;AS_QD=17.86;DP=18;ExcessHet=0.0000;FS=0.000;MQ=45.82;MQRankSum=1.902;QD=17.86;SOR=1.022;VarDP=7 GT:AD:DP:GQ:MIN_DP:PL:SB 1:3,4:7:99:.:125,0:2,1,3,1 0/0:.:5:12:5:0,12,109 +chrX 3996292 . C CCTATATTCTATATAATATATAATATATT 1697.97 . AC=3;AF=1.00;AN=3;AS_AltDP=40;AS_QD=29.85;DP=61;ExcessHet=0.0000;FS=0.000;MQ=56.90;QD=43.43;SOR=1.788;VarDP=40 GT:AD:DP:GQ:PL:SB 1:0,17:17:99:749,0:0,0,12,5 1/1:0,23:23:67:988,67,0:0,0,16,7 +chrX 3996849 . A T 31 . AC=1;AF=0.333;AN=3;AS_AltDP=4;AS_QD=2.03;BaseQRankSum=0.996;DP=72;ExcessHet=0.0000;FS=0.000;MQ=59.07;MQRankSum=0.588;QD=2.03;ReadPosRankSum=0.17;SOR=0.368;VarDP=30 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:29:99:29:.:.:0,129 0|1:26,4:30:61:.:0|1:3996815_T_TATTAC:61,0,1073:3996815:5,8,1,1 +chrX 3997348 . C T 771 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=17.04;BaseQRankSum=0.984;DP=77;ExcessHet=0.0000;FS=6.094;MQ=60.00;MQRankSum=0;QD=17.04;ReadPosRankSum=-1.009;SOR=1.034;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,129 0/1:19,28:47:99:.:801,0,479:8,11,17,11 +chrX 3997378 . C T 563 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=14.46;BaseQRankSum=2.508;DP=72;ExcessHet=0.0000;FS=6.684;MQ=60.00;MQRankSum=0;QD=14.46;ReadPosRankSum=2.289;SOR=0.850;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,129 0/1:19,22:41:99:.:593,0,418:7,12,13,9 +chrX 3997391 . CA C 283.97 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=10.09;BaseQRankSum=2.509;DP=77;ExcessHet=0.0000;FS=14.955;MQ=59.94;MQRankSum=1.063;QD=10.09;ReadPosRankSum=2.836;SOR=1.947;VarDP=32 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,129 0/1:16,16:32:99:.:323,0,315:5,11,12,4 +chrX 3997460 . T C 638 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=15.90;BaseQRankSum=-0.792;DP=72;ExcessHet=0.0000;FS=1.203;MQ=59.83;MQRankSum=0;QD=15.90;ReadPosRankSum=-0.596;SOR=0.495;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,129 0/1:16,26:42:99:.:668,0,385:9,7,13,13 +chrX 3997656 . A G 822 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=15.78;BaseQRankSum=-1.766;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=15.78;ReadPosRankSum=0.071;SOR=0.846;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,129 0/1:21,33:54:99:.:852,0,518:12,9,20,13 +chrX 3997877 . G A 1052 . AC=1;AF=0.333;AN=3;AS_AltDP=40;AS_QD=15.91;BaseQRankSum=1.18;DP=99;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=15.91;ReadPosRankSum=0.305;SOR=0.656;VarDP=68 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,129 0/1:28,40:68:99:.:1082,0,651:15,13,21,19 +chrX 3999442 . A T 706 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=16.73;BaseQRankSum=1.303;DP=74;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=16.73;ReadPosRankSum=-0.8;SOR=0.693;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,129 0/1:18,26:44:99:.:736,0,453:9,9,13,13 +chrX 3999948 . A G 699 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=11.39;BaseQRankSum=-1.036;DP=95;ExcessHet=0.0000;FS=6.801;MQ=60.00;MQRankSum=0;QD=11.39;ReadPosRankSum=1.417;SOR=0.868;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,129 0/1:35,29:64:99:.:729,0,975:21,14,12,17 +chrX 4000734 . C T 434 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=11.90;BaseQRankSum=0.834;DP=72;ExcessHet=0.0000;FS=16.958;MQ=60.00;MQRankSum=0;QD=11.90;ReadPosRankSum=2.297;SOR=2.679;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,129 0/1:22,17:39:99:.:464,0,599:9,13,14,3 +chrX 4000751 . A AAC 286.97 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=15.52;BaseQRankSum=0.098;DP=72;ExcessHet=0.0000;FS=1.971;MQ=59.61;MQRankSum=-0.527;QD=15.52;ReadPosRankSum=-1.479;SOR=0.486;VarDP=21 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,129 0/1:6,15:21:99:.:326,0,102:2,4,8,7 +chrX 4004449 . A C 518 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=11.18;BaseQRankSum=0.294;DP=80;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=11.18;ReadPosRankSum=1.007;SOR=0.818;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,129 0/1:29,20:49:99:.:548,0,838:15,14,11,9 +chrX 4004776 . G C 910 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=16.49;BaseQRankSum=0.808;DP=86;ExcessHet=0.0000;FS=2.316;MQ=60.00;MQRankSum=0;QD=16.49;ReadPosRankSum=0.356;SOR=1.133;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,129 0/1:24,33:57:99:.:940,0,632:11,13,12,21 +chrX 4004915 . A G 513 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=13.92;BaseQRankSum=2.328;DP=71;ExcessHet=0.0000;FS=2.780;MQ=60.00;MQRankSum=0;QD=13.92;ReadPosRankSum=0.647;SOR=0.905;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,129 0/1:20,19:39:99:.:543,0,527:9,11,11,8 +chrX 4006270 . T G 972 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=17.28;BaseQRankSum=1.395;DP=91;ExcessHet=0.0000;FS=2.277;MQ=60.00;MQRankSum=0;QD=17.28;ReadPosRankSum=-1.88;SOR=0.624;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,129 0/1:23,35:58:99:.:1002,0,565:10,13,18,16 +chrX 4006742 . A G 473 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=9.31;BaseQRankSum=0.012;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=9.31;ReadPosRankSum=1.492;SOR=0.560;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,129 0/1:33,21:54:99:.:503,0,890:13,20,9,12 +chrX 4007503 . A G 687 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=13.79;BaseQRankSum=-1.114;DP=82;ExcessHet=0.0000;FS=7.660;MQ=60.00;MQRankSum=0;QD=13.79;ReadPosRankSum=0.266;SOR=0.335;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,129 0/1:25,27:52:99:.:717,0,693:17,8,13,14 +chrX 4008082 . T TTTATTTTATTTATA 1107.97 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=18.21;BaseQRankSum=-0.296;DP=94;ExcessHet=0.0000;FS=6.768;MQ=60.00;MQRankSum=0;QD=18.21;ReadPosRankSum=-0.682;SOR=0.491;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,129 0/1:33,30:63:99:.:1147,0,1284:12,21,16,14 +chrX 4012738 . T C 550 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=14.50;BaseQRankSum=-0.429;DP=70;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.50;ReadPosRankSum=0.898;SOR=0.838;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,129 0/1:18,22:40:99:.:580,0,461:8,10,9,13 +chrX 4013775 . T C 850 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=14.92;BaseQRankSum=-0.354;DP=91;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.92;ReadPosRankSum=0.809;SOR=0.752;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,129 0/1:26,33:59:99:.:880,0,666:13,13,17,16 +chrX 4013986 . A G 985 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=17.81;BaseQRankSum=0.247;DP=86;ExcessHet=0.0000;FS=2.326;MQ=60.00;MQRankSum=0;QD=17.81;ReadPosRankSum=-1.029;SOR=0.721;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,129 0/1:20,37:57:99:.:1015,0,464:11,9,17,20 +chrX 4014815 . GT G,TT 1530 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=40,23;AS_QD=19.48,22.59;BaseQRankSum=2.066;DP=84;ExcessHet=0.0000;FS=5.400;MQ=59.78;MQRankSum=2.711;QD=23.28;ReadPosRankSum=-0.552;SOR=0.097;VarDP=67 GT:AD:DP:GQ:PL:SB 1:3,20,0:23:99:462,0,506:3,0,16,4 1/2:1,20,23:44:99:1098,703,859,488,0,847:1,0,23,20 +chrX 4016714 . A G 576 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=11.88;BaseQRankSum=-0.527;DP=83;ExcessHet=0.0000;FS=1.121;MQ=60.00;MQRankSum=0;QD=11.88;ReadPosRankSum=-0.094;SOR=0.876;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,403 0/1:27,24:51:99:.:606,0,721:9,18,7,17 +chrX 4017039 . G A 181 . AC=1;AF=0.333;AN=3;AS_AltDP=10;AS_QD=5.41;BaseQRankSum=1.249;DP=70;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=5.41;ReadPosRankSum=-0.113;SOR=0.631;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,403 0/1:29,10:39:99:.:211,0,756:15,14,5,5 +chrX 4022031 . A T 814 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=13.40;BaseQRankSum=-0.425;DP=93;ExcessHet=0.0000;FS=0.954;MQ=60.00;MQRankSum=0;QD=13.40;ReadPosRankSum=-0.048;SOR=0.652;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,403 0/1:32,31:63:99:.:844,0,873:15,17,16,15 +chrX 4024006 . G GA 867.97 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=15.64;BaseQRankSum=-0.063;DP=95;ExcessHet=0.0000;FS=2.286;MQ=60.00;MQRankSum=0;QD=15.64;ReadPosRankSum=-0.172;SOR=1.040;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,403 0/1:20,38:58:99:.:907,0,402:10,10,22,16 +chrX 4024643 . C T 739 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=14.51;BaseQRankSum=-0.352;DP=86;ExcessHet=0.0000;FS=1.047;MQ=60.00;MQRankSum=0;QD=14.51;ReadPosRankSum=0.472;SOR=0.774;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,403 0/1:25,28:53:99:.:769,0,690:12,13,15,13 +chrX 4027071 . A G 556 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=11.72;BaseQRankSum=-2.783;DP=81;ExcessHet=0.0000;FS=1.113;MQ=60.00;MQRankSum=0;QD=11.72;ReadPosRankSum=-2.152;SOR=0.473;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,403 0/1:27,23:50:99:.:586,0,788:10,17,10,13 +chrX 4027291 . C T 929 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=16.82;BaseQRankSum=0.691;DP=89;ExcessHet=0.0000;FS=2.238;MQ=60.00;MQRankSum=0;QD=16.82;ReadPosRankSum=0.016;SOR=0.882;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,403 0/1:23,34:57:99:.:959,0,577:11,12,19,15 +chrX 4028001 . A G 592 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=12.69;BaseQRankSum=-0.592;DP=79;ExcessHet=0.0000;FS=4.018;MQ=60.00;MQRankSum=0;QD=12.69;ReadPosRankSum=1.694;SOR=0.465;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,403 0/1:26,23:49:99:.:622,0,736:10,16,12,11 +chrX 4028724 . C CAG 1018.97 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=22.04;BaseQRankSum=0.399;DP=83;ExcessHet=0.0000;FS=2.415;MQ=60.00;MQRankSum=0;QD=22.04;ReadPosRankSum=0.468;SOR=0.554;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,403 0/1:21,27:48:99:.:1058,0,790:9,12,14,13 +chrX 4029603 . A G 891 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=17.71;BaseQRankSum=0;DP=83;ExcessHet=0.0000;FS=2.477;MQ=60.00;MQRankSum=0;QD=17.71;ReadPosRankSum=-0.846;SOR=0.679;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,403 0/1:19,33:52:99:.:921,0,464:11,8,15,18 +chrX 4029643 . T C 874 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=16.14;BaseQRankSum=-1.849;DP=87;ExcessHet=0.0000;FS=1.053;MQ=60.00;MQRankSum=0;QD=16.14;ReadPosRankSum=0.529;SOR=0.493;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,403 0/1:22,34:56:99:.:904,0,598:13,9,18,16 +chrX 4029668 . C G 952 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=16.93;BaseQRankSum=-0.891;DP=90;ExcessHet=0.0000;FS=5.482;MQ=60.00;MQRankSum=0;QD=16.93;ReadPosRankSum=0.254;SOR=0.358;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,403 0/1:23,35:58:99:.:982,0,605:15,8,17,18 +chrX 4029803 . G A 619 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=15.45;BaseQRankSum=-0.874;DP=74;ExcessHet=0.0000;FS=2.735;MQ=60.00;MQRankSum=0;QD=15.45;ReadPosRankSum=-0.929;SOR=1.270;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,403 0/1:18,24:42:99:.:649,0,449:9,9,9,15 +chrX 4029899 . G A 714 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=15.83;BaseQRankSum=1.642;DP=78;ExcessHet=0.0000;FS=1.110;MQ=60.00;MQRankSum=0;QD=15.83;ReadPosRankSum=0.182;SOR=0.881;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,403 0/1:21,26:47:99:.:744,0,489:9,12,10,16 +chrX 4030015 . C CA 494.97 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=17.23;BaseQRankSum=0.046;DP=64;ExcessHet=0.0000;FS=3.256;MQ=60.00;MQRankSum=0;QD=17.23;ReadPosRankSum=1.147;SOR=1.426;VarDP=31 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:30:99:30:.:.:0,403 0|1:15,16:31:99:.:1|0:4030013_G_A:534,0,512:4030013:8,7,11,5 +chrX 4030031 . C A 557 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=16.77;BaseQRankSum=1.132;DP=68;ExcessHet=0.0000;FS=3.110;MQ=59.56;MQRankSum=-0.915;QD=16.77;ReadPosRankSum=-0.116;SOR=1.356;VarDP=35 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:30:99:30:.:.:0,403 0|1:17,18:35:99:.:1|0:4030013_G_A:587,0,567:4030013:10,7,13,5 +chrX 4030284 . A G 577 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=13.20;BaseQRankSum=0.809;DP=76;ExcessHet=0.0000;FS=1.145;MQ=60.00;MQRankSum=0;QD=13.20;ReadPosRankSum=1.012;SOR=0.757;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,403 0/1:24,22:46:99:.:607,0,641:13,11,10,12 +chrX 4030460 . G GAGT 877.97 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=16.98;BaseQRankSum=-2.09;DP=91;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=16.98;ReadPosRankSum=-0.408;SOR=0.628;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,403 0/1:29,25:54:99:.:917,0,1133:10,19,9,16 +chrX 4030512 . C G 898 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=15.21;BaseQRankSum=-0.629;DP=93;ExcessHet=0.0000;FS=2.281;MQ=60.00;MQRankSum=0;QD=15.21;ReadPosRankSum=0.007;SOR=0.394;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,403 0/1:26,35:61:99:.:928,0,671:8,18,14,21 +chrX 4030739 . A G 552 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=11.88;BaseQRankSum=-2.12;DP=80;ExcessHet=0.0000;FS=1.229;MQ=60.00;MQRankSum=0;QD=11.88;ReadPosRankSum=-0.61;SOR=0.434;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,403 0/1:24,25:49:99:.:582,0,668:18,6,17,8 +chrX 4031171 . T C 796 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=15.02;BaseQRankSum=-1.377;DP=86;ExcessHet=0.0000;FS=2.258;MQ=60.00;MQRankSum=0;QD=15.02;ReadPosRankSum=1.212;SOR=0.446;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,403 0/1:23,32:55:99:.:826,0,605:14,9,17,15 +chrX 4031729 . CTCTATCTATCTA C 1695.97 . AC=3;AF=1.00;AN=3;AS_AltDP=39;AS_QD=23.73;DP=63;ExcessHet=0.0000;FS=0.000;MQ=59.98;QD=44.49;SOR=0.968;VarDP=39 GT:AD:DP:GQ:PL:SB 1:0,11:11:99:497,0:0,0,5,6 1/1:0,28:28:86:1238,86,0:0,0,17,11 +chrX 4032456 . T TTATC 722.97 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=17.32;BaseQRankSum=-0.219;DP=81;ExcessHet=0.0000;FS=4.452;MQ=60.00;MQRankSum=0;QD=17.32;ReadPosRankSum=0.307;SOR=0.247;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,360 0/1:24,20:44:99:.:762,0,926:16,8,10,10 +chrX 4032459 . T TCTATTAG 873.97 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=19.02;BaseQRankSum=1.011;DP=84;ExcessHet=0.0000;FS=4.201;MQ=60.00;MQRankSum=0;QD=19.02;ReadPosRankSum=-0.361;SOR=1.519;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,360 0/1:24,24:48:99:.:913,0,926:12,12,16,8 +chrX 4032517 . C T 595 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=12.50;BaseQRankSum=2.646;DP=82;ExcessHet=0.0000;FS=17.512;MQ=60.00;MQRankSum=0;QD=12.50;ReadPosRankSum=0.574;SOR=2.826;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,360 0/1:27,23:50:99:.:625,0,673:13,14,19,4 +chrX 4032682 . G A 856 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=14.52;BaseQRankSum=2.836;DP=93;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.52;ReadPosRankSum=0.736;SOR=0.616;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,360 0/1:30,31:61:99:.:886,0,723:11,19,12,19 +chrX 4033459 . T C 869 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=15.24;BaseQRankSum=0.598;DP=91;ExcessHet=0.0000;FS=9.192;MQ=60.00;MQRankSum=0;QD=15.24;ReadPosRankSum=0.903;SOR=1.034;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,360 0/1:28,31:59:99:.:899,0,776:17,11,12,19 +chrX 4033752 . T TTGTGTG 607.97 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=15.78;BaseQRankSum=-0.316;DP=91;ExcessHet=0.0000;FS=0.000;MQ=59.98;MQRankSum=0;QD=15.78;ReadPosRankSum=0.927;SOR=0.732;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,360 0/1:17,24:41:99:.:647,0,585:5,12,7,17 +chrX 4034054 . T C 601 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=14.02;BaseQRankSum=-1.41;DP=77;ExcessHet=0.0000;FS=4.288;MQ=59.67;MQRankSum=-0.85;QD=14.02;ReadPosRankSum=0.846;SOR=0.714;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,360 0/1:20,25:45:99:.:631,0,520:12,8,11,14 +chrX 4034088 . A G 676 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=15.35;BaseQRankSum=-1.335;DP=78;ExcessHet=0.0000;FS=0.000;MQ=59.68;MQRankSum=-0.795;QD=15.35;ReadPosRankSum=0.312;SOR=0.812;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,360 0/1:19,27:46:99:.:706,0,512:9,10,12,15 +chrX 4034251 . C A 600 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=13.13;BaseQRankSum=-1.62;DP=78;ExcessHet=0.0000;FS=5.864;MQ=60.00;MQRankSum=0;QD=13.13;ReadPosRankSum=-1.737;SOR=0.657;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,360 0/1:21,27:48:99:.:630,0,537:13,8,12,15 +chrX 4034431 . C T 558 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=14.34;BaseQRankSum=0.203;DP=75;ExcessHet=0.0000;FS=15.287;MQ=60.00;MQRankSum=0;QD=14.34;ReadPosRankSum=-1.275;SOR=1.570;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,360 0/1:18,23:41:99:.:588,0,424:6,12,16,7 +chrX 4034466 . AT A 389.97 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=13.00;BaseQRankSum=1.321;DP=68;ExcessHet=0.0000;FS=11.832;MQ=60.00;MQRankSum=0;QD=13.00;ReadPosRankSum=-0.58;SOR=1.711;VarDP=33 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,360 0/1:12,21:33:99:.:429,0,196:4,8,15,6 +chrX 4034628 . C T 811 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=17.89;BaseQRankSum=-0.565;DP=79;ExcessHet=0.0000;FS=2.622;MQ=60.00;MQRankSum=0;QD=17.89;ReadPosRankSum=2.078;SOR=0.376;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,360 0/1:16,31:47:99:.:841,0,385:10,6,16,15 +chrX 4034801 . C T 810 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=13.77;BaseQRankSum=1.771;DP=93;ExcessHet=0.0000;FS=0.971;MQ=60.00;MQRankSum=0;QD=13.77;ReadPosRankSum=0.895;SOR=0.775;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,360 0/1:31,30:61:99:.:840,0,809:15,16,16,14 +chrX 4035182 . A G 662 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=14.12;BaseQRankSum=-1.709;DP=79;ExcessHet=0.0000;FS=4.022;MQ=60.00;MQRankSum=0;QD=14.12;ReadPosRankSum=1.961;SOR=0.742;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,360 0/1:24,25:49:99:.:692,0,687:14,10,11,14 +chrX 4035289 . G C 599 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=13.98;BaseQRankSum=2.315;DP=76;ExcessHet=0.0000;FS=2.550;MQ=60.00;MQRankSum=0;QD=13.98;ReadPosRankSum=-0.818;SOR=0.700;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,360 0/1:23,22:45:99:.:629,0,614:10,13,12,10 +chrX 4035909 . G A 624 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=12.82;BaseQRankSum=0.628;DP=83;ExcessHet=0.0000;FS=1.083;MQ=60.00;MQRankSum=0;QD=12.82;ReadPosRankSum=0.811;SOR=0.503;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,360 0/1:26,25:51:99:.:654,0,676:10,16,11,14 +chrX 4035949 . GC G 778.97 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=17.40;BaseQRankSum=0.465;DP=79;ExcessHet=0.0000;FS=6.219;MQ=60.00;MQRankSum=0;QD=17.40;ReadPosRankSum=-0.353;SOR=0.480;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,360 0/1:21,26:47:99:.:818,0,624:7,14,14,12 +chrX 4036098 . G T 757 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=14.57;BaseQRankSum=-1.008;DP=87;ExcessHet=0.0000;FS=1.064;MQ=60.00;MQRankSum=0;QD=14.57;ReadPosRankSum=-0.731;SOR=0.914;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,360 0/1:24,30:54:99:.:787,0,617:10,14,11,19 +chrX 4036536 . A T 779 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=12.26;BaseQRankSum=-0.475;DP=98;ExcessHet=0.0000;FS=6.435;MQ=60.00;MQRankSum=0;QD=12.26;ReadPosRankSum=0.219;SOR=1.128;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,360 0/1:35,31:66:99:.:809,0,942:19,16,12,19 +chrX 4036931 . C T 751 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=13.70;BaseQRankSum=-0.02;DP=88;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.70;ReadPosRankSum=-0.648;SOR=0.627;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,360 0/1:27,30:57:99:.:781,0,686:14,13,15,15 +chrX 4037247 . T C 606 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=13.83;BaseQRankSum=-0.957;DP=79;ExcessHet=0.0000;FS=6.267;MQ=60.00;MQRankSum=0;QD=13.83;ReadPosRankSum=0.495;SOR=0.661;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,360 0/1:23,23:46:99:.:636,0,661:15,8,10,13 +chrX 4037616 . G C 427 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=9.52;BaseQRankSum=-0.587;DP=81;ExcessHet=0.0000;FS=2.541;MQ=60.00;MQRankSum=0;QD=9.52;ReadPosRankSum=-0.833;SOR=0.549;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,360 0/1:29,19:48:99:.:457,0,819:17,12,9,10 +chrX 4038125 . C T 815 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=10.56;BaseQRankSum=1.745;DP=112;ExcessHet=0.0000;FS=0.870;MQ=60.00;MQRankSum=0;QD=10.56;ReadPosRankSum=-0.171;SOR=0.513;VarDP=80 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,360 0/1:47,33:80:99:.:845,0,1223:28,19,18,15 +chrX 4038899 . G A 456 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=10.57;BaseQRankSum=-0.438;DP=79;ExcessHet=0.0000;FS=1.177;MQ=60.00;MQRankSum=0;QD=10.57;ReadPosRankSum=-0.687;SOR=1.002;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,360 0/1:28,18:46:99:.:486,0,815:15,13,11,7 +chrX 4039869 . GGTA G 909.97 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=17.25;BaseQRankSum=-0.775;DP=86;ExcessHet=0.0000;FS=3.783;MQ=60.00;MQRankSum=0;QD=17.25;ReadPosRankSum=0.262;SOR=1.063;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,360 0/1:30,25:55:99:.:949,0,1152:16,14,10,15 +chrX 4040175 . T C 535 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=11.77;BaseQRankSum=-0.304;DP=80;ExcessHet=0.0000;FS=5.874;MQ=60.00;MQRankSum=0;QD=11.77;ReadPosRankSum=-1.449;SOR=1.261;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,360 0/1:26,22:48:99:.:565,0,720:14,12,8,14 +chrX 4040277 . C CAT,CATATAT 1284.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=27,11;AS_QD=16.67,9.12;BaseQRankSum=1.495;DP=77;ExcessHet=0.0000;FS=4.842;MQ=60.00;MQRankSum=0;QD=19.47;ReadPosRankSum=1.733;SOR=1.304;VarDP=68 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,27,0:28:99:.:.:950,0,988:.:0,1,18,9 0|2:29,0,11:40:99:0|1:4040277_C_CATATAT:374,462,1659,0,1197,1164:4040277:16,13,7,4 +chrX 4040296 . G A 426 . AC=1;AF=0.333;AN=3;AS_AltDP=14;AS_QD=10.36;BaseQRankSum=2.163;DP=77;ExcessHet=0.0000;FS=2.935;MQ=60.00;MQRankSum=0;QD=10.36;ReadPosRankSum=-0.454;SOR=1.368;VarDP=44 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:31:99:31:.:.:0,640 0|1:30,14:44:99:.:0|1:4040277_C_CATATAT:456,0,1187:4040277:17,13,10,4 +chrX 4040996 . G A 719 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=13.87;BaseQRankSum=2.201;DP=91;ExcessHet=0.0000;FS=3.828;MQ=60.00;MQRankSum=0;QD=13.87;ReadPosRankSum=-1.177;SOR=0.981;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,640 0/1:27,27:54:99:.:749,0,692:12,15,16,11 +chrX 4041190 . G C 2440 . AC=3;AF=1.00;AN=3;AS_AltDP=75;AS_QD=32.93;DP=78;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.93;SOR=1.240;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:967,0:0,0,11,20 1/1:0,44:44:99:1503,132,0:0,0,18,26 +chrX 4054091 . G T 803 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=13.22;BaseQRankSum=1.372;DP=95;ExcessHet=0.0000;FS=5.005;MQ=60.00;MQRankSum=0;QD=13.22;ReadPosRankSum=-0.22;SOR=0.299;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,522 0/1:33,30:63:99:.:833,0,898:12,21,15,15 +chrX 4054640 . T A 105 . AC=1;AF=0.333;AN=3;AS_AltDP=9;AS_QD=2.65;BaseQRankSum=0.429;DP=86;ExcessHet=0.0000;FS=0.000;MQ=59.84;MQRankSum=0.514;QD=2.65;ReadPosRankSum=0.618;SOR=0.892;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,522 0/1:42,9:51:99:.:135,0,1223:21,21,5,4 +chrX 4055949 . CCACA C,CCA 880.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=14,15;AS_QD=20.90,10.47;BaseQRankSum=0.945;DP=74;ExcessHet=0.0000;FS=0.000;MQ=59.69;MQRankSum=0;QD=20.91;ReadPosRankSum=1.747;SOR=0.544;VarDP=44 GT:AD:DP:GQ:PL:SB 1:0,14,0:14:99:606,0,606:0,0,6,8 0/2:15,0,15:30:99:314,359,710,0,351,306:6,9,7,8 +chrX 4061196 . G GTCTA 616.97 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=22.62;BaseQRankSum=0;DP=72;ExcessHet=0.0000;FS=1.485;MQ=60.00;MQRankSum=0;QD=22.62;ReadPosRankSum=0.111;SOR=0.586;VarDP=29 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:99:28:0,360 0/1:12,17:29:99:.:656,0,433:7,5,8,9 +chrX 4062425 . C T 207 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=5.27;BaseQRankSum=0.267;DP=74;ExcessHet=0.0000;FS=7.817;MQ=60.00;MQRankSum=0;QD=5.27;ReadPosRankSum=-1.017;SOR=1.741;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:99:28:0,360 0/1:34,11:45:99:.:237,0,1007:19,15,3,8 +chrX 4067335 . CT C 505.97 . AC=2;AF=0.667;AN=3;AS_AltDP=13;AS_QD=23.76;DP=64;ExcessHet=0.0000;FS=0.000;MQ=59.07;QD=41.92;SOR=3.767;VarDP=13 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:28:99:28:.:.:0,360 1|1:0,13:13:39:.:0|1:4067335_CT_C:545,39,0:4067335:0,0,1,12 +chrX 4067336 . TTTTCTTTCTTTC T,* 651.97 . AC=1,2;AF=0.333,0.667;AN=3;AS_AltDP=16,0;AS_QD=31.60,34.56;DP=54;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.19;SOR=3.841;VarDP=16 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,16,0:16:99:.:.:691,0,691:.:0,0,2,14 2|2:0,0,13:13:39:0|1:4067335_CT_C:545,547,548,39,40,0:4067335:0,0,1,12 +chrX 4067344 . C *,CT 520.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=0,6;AS_QD=0.00,28.66;BaseQRankSum=-0.097;DP=51;ExcessHet=0.0000;FS=0.000;MQ=59.49;MQRankSum=0;QD=43.08;ReadPosRankSum=1.485;SOR=1.609;VarDP=13 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,16,0:16:99:.:.:691,0,691:.:0,0,2,14 0|2:7,0,6:13:99:0|1:4067335_CT_C:560,240,681,0,261,426:4067335:1,6,0,6 +chrX 4067345 . TTTC *,T 364.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=0,7;AS_QD=0.00,18.36;BaseQRankSum=-0.424;DP=50;ExcessHet=0.0000;FS=0.000;MQ=59.48;MQRankSum=0;QD=18.36;ReadPosRankSum=0;SOR=0.399;VarDP=22 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,16,0:16:99:.:.:691,0,691:.:0,0,2,14 0|2:15,0,7:22:99:1|0:4067335_CT_C:404,279,1043,0,623,594:4067335:1,14,1,6 +chrX 4070604 . A G 739 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=32.04;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.04;SOR=0.859;VarDP=24 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,24:24:99:.:769,0:0,0,11,13 0/0:.:57:64:57:0,64,794 +chrX 4077443 . G A 81 . AC=1;AF=0.333;AN=3;AS_AltDP=8;AS_QD=2.41;BaseQRankSum=-0.141;DP=80;ExcessHet=0.0000;FS=3.570;MQ=60.00;MQRankSum=0;QD=2.41;ReadPosRankSum=1.044;SOR=1.536;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:59:28:0,59 0/1:38,8:46:99:.:111,0,1018:21,17,6,2 +chrX 4082093 . C CA 296.97 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=11.59;BaseQRankSum=0.066;DP=76;ExcessHet=0.0000;FS=7.367;MQ=59.19;MQRankSum=-0.674;QD=11.59;ReadPosRankSum=-1.941;SOR=0.251;VarDP=29 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:59:28:0,59 0/1:6,23:29:35:.:336,0,35:5,1,11,12 +chrX 4086288 . G GT 263.97 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=7.97;BaseQRankSum=0.471;DP=76;ExcessHet=0.0000;FS=2.895;MQ=60.00;MQRankSum=0;QD=7.97;ReadPosRankSum=0.976;SOR=0.499;VarDP=38 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:28:59:28:.:.:0,59 0|1:21,17:38:99:.:0|1:4086288_G_GT:303,0,420:4086288:13,8,8,9 +chrX 4086485 . C T 3447 . AC=3;AF=1.00;AN=3;AS_AltDP=105;AS_QD=33.11;DP=105;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.11;SOR=0.833;VarDP=105 GT:AD:DP:GQ:PL:SB 1:0,45:45:99:1494,0:0,0,25,20 1/1:0,60:60:99:1983,180,0:0,0,31,29 +chrX 4090557 . A AAACAAC 998.97 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=23.59;BaseQRankSum=-0.733;DP=83;ExcessHet=0.0000;FS=2.661;MQ=60.00;MQRankSum=0;QD=23.59;ReadPosRankSum=-0.585;SOR=1.220;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,264 0/1:18,26:44:99:.:1038,0,621:9,9,16,10 +chrX 4091446 . A G 645 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=14.06;BaseQRankSum=-1.08;DP=81;ExcessHet=0.0000;FS=6.171;MQ=60.00;MQRankSum=0;QD=14.06;ReadPosRankSum=0.723;SOR=1.579;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,264 0/1:23,25:48:99:.:675,0,635:11,12,17,8 +chrX 4094421 . GA G 150.97 . AC=1;AF=0.333;AN=3;AS_AltDP=10;AS_QD=15.83;BaseQRankSum=-0.874;DP=75;ExcessHet=0.0000;FS=3.424;MQ=60.00;MQRankSum=0;QD=15.83;ReadPosRankSum=-0.158;SOR=0.728;VarDP=12 GT:AD:DP:GQ:MIN_DP:PL:SB 1:2,10:12:99:.:190,0:0,2,6,4 0/0:.:55:0:55:0,0,1305 +chrX 4096913 . CA C 224.97 . AC=2;AF=0.667;AN=3;AS_AltDP=19;AS_QD=7.76;BaseQRankSum=0;DP=65;ExcessHet=0.0000;FS=50.255;MQ=58.44;MQRankSum=0;QD=7.76;ReadPosRankSum=0.319;SOR=4.504;VarDP=34 GT:AD:DP:GQ:PL:SB 1:3,6:9:76:76,0:1,2,5,1 0/1:12,13:25:99:188,0,139:2,10,13,0 +chrX 4099280 . G GTATC 887.97 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=29.70;DP=84;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.14;SOR=1.508;VarDP=21 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,21:21:99:.:927,0:0,0,14,7 0/0:.:55:54:55:0,54,1195 +chrX 4102689 . G A 2276 . AC=3;AF=1.00;AN=3;AS_AltDP=69;AS_QD=33.42;DP=70;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.42;SOR=1.054;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,13:13:99:419,0:0,0,7,6 1/1:0,56:56:99:1887,168,0:0,0,33,23 +chrX 4109642 . CTGTGTGTGTG C,CTGTGTGTGTGTG 2055.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=31,27;AS_QD=29.70,16.26;BaseQRankSum=2.104;DP=93;ExcessHet=0.0000;FS=4.027;MQ=59.55;MQRankSum=-0.722;QD=28.31;ReadPosRankSum=0.39;SOR=0.956;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,31,0:31:99:1396,0,1396:0,0,17,14 0/2:16,0,27:43:99:699,747,1191,0,444,363:7,9,17,10 +chrX 4112015 . AAGAG A 650.97 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=24.64;BaseQRankSum=0.332;DP=61;ExcessHet=0.0000;FS=5.946;MQ=59.58;MQRankSum=-0.671;QD=24.64;ReadPosRankSum=1.261;SOR=0.556;VarDP=28 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:33:21:0,33 0/1:10,18:28:99:.:690,0,319:7,3,8,10 +chrX 4115756 . A AT 252.97 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=9.73;BaseQRankSum=0.647;DP=69;ExcessHet=0.0000;FS=5.905;MQ=59.17;MQRankSum=-0.692;QD=9.73;ReadPosRankSum=-0.56;SOR=1.109;VarDP=30 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:33:21:0,33 0/1:11,19:30:99:.:292,0,161:4,7,12,7 +chrX 4117348 . A G 593 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=13.26;BaseQRankSum=-0.049;DP=68;ExcessHet=0.0000;FS=1.117;MQ=60.00;MQRankSum=0;QD=13.26;ReadPosRankSum=-0.117;SOR=0.794;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:33:21:0,33 0/1:23,24:47:99:.:623,0,619:11,12,13,11 +chrX 4117929 . T TTTTATTTA,TTTTA 1574.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=24,16;AS_QD=20.37,13.37;BaseQRankSum=0.689;DP=100;ExcessHet=0.0000;FS=0.939;MQ=59.85;MQRankSum=0;QD=24.09;ReadPosRankSum=-0.289;SOR=0.733;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:1039,0,1040:0,0,10,14 0/2:27,0,16:43:99:575,657,1787,0,1130,1082:14,13,9,7 +chrX 4119179 . T TCCC 174.97 . AC=2;AF=0.667;AN=3;AS_AltDP=5;AS_QD=33.09;DP=45;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=42.80;SOR=3.611;VarDP=5 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:32:99:32:.:.:0,139 1|1:0,5:5:15:.:0|1:4119179_T_TCCC:214,15,0:4119179:0,0,0,5 +chrX 4119197 . TTTCC T,CTTCC 407 . AC=1,2;AF=0.333,0.667;AN=3;AS_AltDP=0,5;AS_QD=31.03,29.94;DP=18;ExcessHet=0.0000;FS=0.000;MQ=56.81;QD=72.83;SOR=3.912;VarDP=6 GT:AD:DP:GQ:PL:SB 1:0,1,0:1:43:43,0,45:0,0,0,1 2/2:0,0,5:5:20:394,234,314,27,20,0:0,0,0,5 +chrX 4119201 . C *,CTTCCTTCT 354.97 . AC=1,2;AF=0.333,0.667;AN=3;AS_AltDP=0,5;AS_QD=25.36,28.81;DP=18;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=78.80;SOR=3.912;VarDP=5 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,1,0:1:43:.:.:43,0,45:.:0,0,0,1 2|2:0,0,5:5:20:0|1:4119179_T_TCCC:394,234,314,27,20,0:4119179:0,0,0,5 +chrX 4119769 . G A 2282 . AC=3;AF=1.00;AN=3;AS_AltDP=73;AS_QD=31.67;DP=75;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.67;SOR=0.720;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:724,0:0,0,14,10 1/1:0,49:49:99:1588,147,0:0,0,22,27 +chrX 4120022 . C CATCT,CATCTATCT 1797.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=23,25;AS_QD=18.80,17.96;BaseQRankSum=-0.158;DP=105;ExcessHet=0.0000;FS=3.431;MQ=59.80;MQRankSum=0;QD=24.82;ReadPosRankSum=0.437;SOR=0.356;VarDP=74 GT:AD:DP:GQ:PL:SB 1:1,23,0:24:99:921,0,954:1,0,16,7 0/2:25,0,25:50:99:916,992,1973,0,980,905:17,8,12,13 +chrX 4120397 . T C 486 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=9.92;BaseQRankSum=-0.055;DP=80;ExcessHet=0.0000;FS=2.514;MQ=60.00;MQRankSum=0;QD=9.92;ReadPosRankSum=-0.169;SOR=0.357;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:24:99:24:0,180 0/1:32,20:52:99:.:516,0,920:11,21,9,11 +chrX 4120735 . A T 98 . AC=1;AF=0.333;AN=3;AS_AltDP=6;AS_QD=5.33;BaseQRankSum=-1.496;DP=52;ExcessHet=0.0000;FS=1.935;MQ=55.79;MQRankSum=0.208;QD=5.33;ReadPosRankSum=1.119;SOR=1.238;VarDP=24 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:24:99:24:0,180 0/1:18,6:24:99:.:128,0,617:8,10,4,2 +chrX 4120737 . AT ATTTT,ATATTTT,A,ATTTTTT 334.97 . AC=0,1,0,1;AF=0.00,0.333,0.00,0.333;AN=3;AS_AltDP=0,2,0,8;AS_QD=4.27,14.23,0.00,9.95;BaseQRankSum=-0.627;DP=40;ExcessHet=0.0000;FS=0.000;MQ=54.58;MQRankSum=-0.715;QD=17.81;ReadPosRankSum=0.151;SOR=0.892;VarDP=21 GT:AD:DP:GQ:PL:SB 2:0,0,2,0,0:2:99:185,138,0,162,162:0,0,2,0 0/4:11,0,0,0,8:19:99:189,247,803,247,803,803,232,731,731,728,0,557,557,462,611:6,5,4,4 +chrX 4120738 . T *,TATATA 72.97 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=0,7;AS_QD=0.00,7.47;BaseQRankSum=0.135;DP=45;ExcessHet=0.0000;FS=0.000;MQ=55.94;MQRankSum=0.045;QD=7.47;ReadPosRankSum=1.555;SOR=0.941;VarDP=15 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:16:99:16:0,174,174 0/2:8,0,7:15:99:.:112,135,752,0,294,286:4,4,3,4 +chrX 4121350 . A AT,ATT 1262.97 . AC=3,0;AF=1.00,0.00;AN=3;AS_AltDP=52,3;AS_QD=24.57,0.00;BaseQRankSum=-0.648;DP=76;ExcessHet=0.0000;FS=0.000;MQ=59.56;MQRankSum=0;QD=23.25;ReadPosRankSum=-1.64;SOR=0.269;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,15,3:18:99:.:.:457,0,587:.:0,0,7,11 1|1:1,37,0:38:90:0|1:4121350_A_AT:845,90,0,848,109,867:4121350:0,1,19,18 +chrX 4121694 . TTTTC T 1364.97 . AC=2;AF=0.667;AN=3;AS_AltDP=42;AS_QD=20.65;BaseQRankSum=0.377;DP=79;ExcessHet=0.0000;FS=19.568;MQ=60.00;MQRankSum=0;QD=20.65;ReadPosRankSum=-3.137;SOR=1.809;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,21:21:99:912,0:0,0,6,15 0/1:26,21:47:99:492,0,989:16,10,6,15 +chrX 4121789 . C CTTCT,CTTCTTTCTTTCTTTCT 1517.97 . AC=1,2;AF=0.333,0.667;AN=3;AS_AltDP=11,24;AS_QD=27.50,27.22;DP=50;ExcessHet=0.0000;FS=0.000;MQ=56.68;QD=44.49;SOR=1.308;VarDP=35 GT:AD:DP:GQ:PL:SB 1:0,11,0:11:99:478,0,479:0,0,6,5 2/2:0,0,24:24:72:1079,1080,1080,72,72,0:0,0,7,17 +chrX 4121854 . C CCCTT 235.97 . AC=1;AF=0.333;AN=3;AS_AltDP=9;AS_QD=27.50;BaseQRankSum=0.126;DP=44;ExcessHet=0.0000;FS=6.990;MQ=57.09;MQRankSum=-0.385;QD=27.50;ReadPosRankSum=0.674;SOR=3.020;VarDP=10 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,9:10:99:.:275,0:1,0,1,8 0/0:.:31:14:31:0,14,127 +chrX 4121900 . CT C 221.97 . AC=1;AF=0.500;AN=2;AS_AltDP=7;AS_QD=23.73;BaseQRankSum=-1.282;DP=63;ExcessHet=0.0000;FS=0.000;MQ=44.84;MQRankSum=0.253;QD=23.73;ReadPosRankSum=1.282;SOR=1.609;VarDP=11 GT:AD:DP:GQ:MIN_DP:PL:SB .:.:19:0:19:0,0 0/1:4,7:11:99:.:261,0,111:2,2,0,1 +chrX 4121904 . CTTTCTTTCTTTCTTT *,C,CCTTT,CCTTTCTTTCTTT 174.97 . AC=0,1,0,0;AF=0.00,0.333,0.00,0.00;AN=3;AS_AltDP=0,0,0,0;AS_QD=26.02,26.60,30.44,29.81;DP=81;ExcessHet=0.0000;FS=0.000;MQ=46.12;QD=42.80;SOR=0.446;VarDP=5 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:90:30:0,90,90,90,90 0/2:5,0,0,0,0:5:16:.:214,36,764,0,323,695,16,487,613,862,241,319,278,195,513:2,3,0,0 +chrX 4121923 . T C 192 . AC=1;AF=0.333;AN=3;AS_AltDP=7;AS_QD=9.65;BaseQRankSum=-1.822;DP=78;ExcessHet=0.0000;FS=0.000;MQ=46.40;MQRankSum=-0.55;QD=9.65;ReadPosRankSum=0.306;SOR=1.270;VarDP=23 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:90:30:0,90 0/1:16,7:23:99:.:222,0,616:7,9,0,1 +chrX 4123250 . G A 857 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=15.56;BaseQRankSum=2.038;DP=89;ExcessHet=0.0000;FS=1.032;MQ=60.00;MQRankSum=0;QD=15.56;ReadPosRankSum=-0.137;SOR=0.534;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:90:30:0,90 0/1:25,32:57:99:.:887,0,593:16,9,19,13 +chrX 4123615 . T A 577 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=14.80;BaseQRankSum=1.503;DP=74;ExcessHet=0.0000;FS=4.506;MQ=60.00;MQRankSum=0;QD=14.80;ReadPosRankSum=-0.235;SOR=0.774;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:90:30:0,90 0/1:20,21:41:99:.:607,0,552:12,8,9,12 +chrX 4124651 . T C 3408 . AC=3;AF=1.00;AN=3;AS_AltDP=105;AS_QD=32.74;DP=108;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.74;SOR=1.064;VarDP=105 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:1101,0:0,0,17,15 1/1:0,73:73:99:2337,219,0:0,0,44,29 +chrX 4126026 . G A 2755 . AC=3;AF=1.00;AN=3;AS_AltDP=83;AS_QD=33.55;DP=89;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.55;SOR=1.112;VarDP=83 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:819,0:0,0,12,13 1/1:0,58:58:99:1966,174,0:0,0,37,21 +chrX 4126778 . A G 3196 . AC=3;AF=1.00;AN=3;AS_AltDP=98;AS_QD=32.92;DP=101;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.92;SOR=0.963;VarDP=98 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:1028,0:0,0,17,14 1/1:0,67:67:99:2198,201,0:0,0,38,29 +chrX 4127073 . T C 3243 . AC=3;AF=1.00;AN=3;AS_AltDP=101;AS_QD=32.41;DP=107;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.41;SOR=0.839;VarDP=101 GT:AD:DP:GQ:PL:SB 1:0,37:37:99:1201,0:0,0,16,21 1/1:0,64:64:99:2072,192,0:0,0,31,33 +chrX 4127323 . T C 2634 . AC=3;AF=1.00;AN=3;AS_AltDP=82;AS_QD=32.49;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.49;SOR=0.846;VarDP=82 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:1000,0:0,0,12,18 1/1:0,52:52:99:1664,155,0:0,0,32,20 +chrX 4127524 . C T 3103 . AC=3;AF=1.00;AN=3;AS_AltDP=100;AS_QD=31.33;DP=103;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.33;SOR=0.818;VarDP=100 GT:AD:DP:GQ:PL:SB 1:0,40:40:99:1310,0:0,0,23,17 1/1:0,60:60:99:1823,178,0:0,0,30,30 +chrX 4127656 . T G 2526 . AC=3;AF=1.00;AN=3;AS_AltDP=77;AS_QD=32.35;BaseQRankSum=4.241;DP=85;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=32.35;ReadPosRankSum=0.523;SOR=0.887;VarDP=79 GT:AD:DP:GQ:PL:SB 1:2,36:38:99:1182,0:1,1,17,19 1/1:0,41:41:99:1374,123,0:0,0,18,23 +chrX 4128090 . T C 2696 . AC=3;AF=1.00;AN=3;AS_AltDP=88;AS_QD=30.63;BaseQRankSum=-0.602;DP=93;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=30.63;ReadPosRankSum=0.478;SOR=0.283;VarDP=89 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:982,0:0,0,14,17 1/1:1,57:58:99:1744,139,0:0,1,27,30 +chrX 4128158 . T C 2901 . AC=3;AF=1.00;AN=3;AS_AltDP=92;AS_QD=31.52;BaseQRankSum=-0.532;DP=95;ExcessHet=0.0000;FS=0.000;MQ=59.95;MQRankSum=0;QD=31.52;ReadPosRankSum=-0.507;SOR=0.301;VarDP=93 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:947,0:0,0,14,14 1/1:1,64:65:99:1984,159,0:0,1,28,36 +chrX 4128535 . C T 3409 . AC=3;AF=1.00;AN=3;AS_AltDP=80;AS_QD=32.40;DP=81;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=42.99;SOR=1.165;VarDP=80 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,33:33:99:.:.:1387,0:.:0,0,19,14 1|1:0,47:47:99:0|1:4128535_C_T:2052,141,0:4128535:0,0,29,18 +chrX 4128557 . T C 3752 . AC=3;AF=1.00;AN=3;AS_AltDP=90;AS_QD=31.85;DP=91;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=42.02;SOR=1.364;VarDP=90 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,33:33:99:.:.:1382,0:.:0,0,20,13 1|1:0,57:57:99:0|1:4128535_C_T:2400,172,0:4128535:0,0,37,20 +chrX 4129078 . C T 2884 . AC=3;AF=1.00;AN=3;AS_AltDP=88;AS_QD=33.11;DP=89;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.11;SOR=0.786;VarDP=88 GT:AD:DP:GQ:PL:SB 1:0,34:34:99:1162,0:0,0,14,20 1/1:0,54:54:99:1752,162,0:0,0,28,26 +chrX 4129204 . T C 2351 . AC=3;AF=1.00;AN=3;AS_AltDP=74;AS_QD=31.75;BaseQRankSum=1.945;DP=77;ExcessHet=0.0000;FS=3.436;MQ=60.00;MQRankSum=0;QD=31.75;ReadPosRankSum=0.866;SOR=0.574;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:878,0:0,0,11,16 1/1:1,47:48:99:1503,119,0:1,0,22,25 +chrX 4129252 . A T 2178 . AC=3;AF=1.00;AN=3;AS_AltDP=68;AS_QD=32.47;DP=73;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.47;SOR=1.022;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:809,0:0,0,16,8 1/1:0,44:44:99:1399,132,0:0,0,23,21 +chrX 4129499 . T A 2620 . AC=3;AF=1.00;AN=3;AS_AltDP=80;AS_QD=33.13;DP=82;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.13;SOR=1.096;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:923,0:0,0,15,13 1/1:0,52:52:99:1727,156,0:0,0,32,20 +chrX 4129711 . C G 3058 . AC=3;AF=1.00;AN=3;AS_AltDP=92;AS_QD=33.57;DP=95;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.57;SOR=0.782;VarDP=92 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:854,0:0,0,11,15 1/1:0,66:66:99:2234,199,0:0,0,33,33 +chrX 4129968 . A G 2931 . AC=3;AF=1.00;AN=3;AS_AltDP=91;AS_QD=32.54;DP=94;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.54;SOR=0.906;VarDP=91 GT:AD:DP:GQ:PL:SB 1:0,34:34:99:1062,0:0,0,13,21 1/1:0,57:57:99:1899,171,0:0,0,28,29 +chrX 4130016 . A G 2445 . AC=3;AF=1.00;AN=3;AS_AltDP=77;AS_QD=32.14;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.14;SOR=1.150;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:749,0:0,0,10,13 1/1:0,54:54:99:1726,161,0:0,0,21,33 +chrX 4130397 . C G 3493 . AC=3;AF=1.00;AN=3;AS_AltDP=79;AS_QD=30.32;DP=79;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.59;SOR=1.207;VarDP=79 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,26:26:99:.:.:1159,0:.:0,0,20,6 1|1:0,53:53:99:0|1:4130397_C_G:2364,160,0:4130397:0,0,28,25 +chrX 4130406 . C T 3576 . AC=3;AF=1.00;AN=3;AS_AltDP=82;AS_QD=29.78;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.98;SOR=1.085;VarDP=82 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,27:27:99:.:.:1184,0:.:0,0,20,7 1|1:0,55:55:99:0|1:4130397_C_G:2422,166,0:4130397:0,0,28,27 +chrX 4130736 . T A 2854 . AC=3;AF=1.00;AN=3;AS_AltDP=86;AS_QD=33.53;DP=90;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.53;SOR=1.005;VarDP=86 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:1067,0:0,0,15,17 1/1:0,54:54:99:1817,162,0:0,0,22,32 +chrX 4130813 . G T 2843 . AC=3;AF=1.00;AN=3;AS_AltDP=86;AS_QD=33.41;DP=87;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.41;SOR=0.788;VarDP=86 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:908,0:0,0,16,12 1/1:0,58:58:99:1965,174,0:0,0,29,29 +chrX 4131408 . G A 3027 . AC=3;AF=1.00;AN=3;AS_AltDP=94;AS_QD=32.52;DP=96;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.52;SOR=1.396;VarDP=94 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:1087,0:0,0,13,20 1/1:0,61:61:99:1970,182,0:0,0,21,40 +chrX 4131545 . A G 2197 . AC=3;AF=1.00;AN=3;AS_AltDP=70;AS_QD=31.81;DP=73;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.81;SOR=1.085;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,21:21:99:690,0:0,0,16,5 1/1:0,49:49:99:1537,146,0:0,0,25,24 +chrX 4131841 . C T 2761 . AC=3;AF=1.00;AN=3;AS_AltDP=84;AS_QD=32.45;BaseQRankSum=4.201;DP=87;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=32.45;ReadPosRankSum=1.541;SOR=1.013;VarDP=86 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:968,0:0,0,17,12 1/1:2,55:57:99:1823,122,0:1,1,31,24 +chrX 4131976 . C G 2421 . AC=3;AF=1.00;AN=3;AS_AltDP=80;AS_QD=28.17;BaseQRankSum=3.915;DP=92;ExcessHet=0.0000;FS=1.504;MQ=59.61;MQRankSum=1.383;QD=28.17;ReadPosRankSum=0.885;SOR=0.618;VarDP=87 GT:AD:DP:GQ:PL:SB 1:2,33:35:99:1098,0:1,1,17,16 1/1:5,47:52:26:1353,26,0:2,3,25,22 +chrX 4133017 . A C 2537 . AC=3;AF=1.00;AN=3;AS_AltDP=59;AS_QD=28.24;DP=68;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.51;SOR=0.770;VarDP=59 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,23:23:99:.:.:974,0:.:0,0,9,13 1|1:0,36:36:99:0|1:4133017_A_C:1593,109,0:4133017:0,0,16,14 +chrX 4133019 . A C 2537 . AC=3;AF=1.00;AN=3;AS_AltDP=59;AS_QD=27.98;DP=67;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.51;SOR=0.770;VarDP=59 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,23:23:99:.:.:974,0:.:0,0,9,13 1|1:0,36:36:99:0|1:4133017_A_C:1593,109,0:4133017:0,0,16,14 +chrX 4133021 . A C 32 . AC=1;AF=0.333;AN=3;AS_AltDP=5;AS_QD=1.68;BaseQRankSum=0.971;DP=70;ExcessHet=0.0000;FS=2.126;MQ=60.00;MQRankSum=0;QD=1.68;ReadPosRankSum=1.712;SOR=1.426;VarDP=37 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:30:99:30:.:.:0,719 0|1:32,5:37:62:.:0|1:4133017_A_C:62,0,904:4133017:17,15,3,1 +chrX 4133658 . C CT 1316.97 . AC=3;AF=1.00;AN=3;AS_AltDP=58;AS_QD=22.98;BaseQRankSum=-0.399;DP=70;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=22.98;ReadPosRankSum=-1.263;SOR=0.283;VarDP=59 GT:AD:DP:GQ:PL:SB 1:1,21:22:99:455,0:1,0,8,13 1/1:0,37:37:99:901,111,0:0,0,23,14 +chrX 4133699 . G A 2091 . AC=3;AF=1.00;AN=3;AS_AltDP=64;AS_QD=33.14;DP=67;ExcessHet=0.0000;FS=0.000;MQ=59.75;QD=33.14;SOR=0.756;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:729,0:0,0,12,11 1/1:0,41:41:99:1392,123,0:0,0,21,20 +chrX 4134502 . A G 2789 . AC=3;AF=1.00;AN=3;AS_AltDP=86;AS_QD=32.78;DP=88;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.78;SOR=0.947;VarDP=86 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:963,0:0,0,13,17 1/1:0,56:56:99:1856,168,0:0,0,25,31 +chrX 4134685 . C G 2218 . AC=3;AF=1.00;AN=3;AS_AltDP=69;AS_QD=32.58;DP=72;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.58;SOR=0.722;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:858,0:0,0,11,16 1/1:0,42:42:99:1390,126,0:0,0,24,18 +chrX 4135461 . G A 2371 . AC=3;AF=1.00;AN=3;AS_AltDP=72;AS_QD=33.35;DP=74;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.35;SOR=1.073;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:819,0:0,0,16,9 1/1:0,47:47:99:1582,141,0:0,0,26,21 +chrX 4137223 . G A 2393 . AC=3;AF=1.00;AN=3;AS_AltDP=72;AS_QD=33.65;DP=76;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.65;SOR=0.934;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:917,0:0,0,14,13 1/1:0,45:45:99:1506,135,0:0,0,26,19 +chrX 4137478 . T G 2942 . AC=3;AF=1.00;AN=3;AS_AltDP=89;AS_QD=33.39;DP=91;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.39;SOR=1.270;VarDP=89 GT:AD:DP:GQ:PL:SB 1:0,20:20:99:670,0:0,0,14,6 1/1:0,69:69:99:2302,206,0:0,0,41,28 +chrX 4137929 . TA T 2928.97 . AC=3;AF=1.00;AN=3;AS_AltDP=91;AS_QD=32.62;DP=94;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.62;SOR=0.959;VarDP=91 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:915,0:0,0,9,19 1/1:0,63:63:99:2053,190,0:0,0,31,32 +chrX 4139060 . A AT 1244.97 . AC=3;AF=1.00;AN=3;AS_AltDP=56;AS_QD=22.93;DP=82;ExcessHet=0.0000;FS=0.000;MQ=59.67;QD=22.93;SOR=0.841;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:517,0:0,0,14,9 1/1:0,33:33:98:767,98,0:0,0,16,17 +chrX 4140344 . A C 2896 . AC=3;AF=1.00;AN=3;AS_AltDP=94;AS_QD=31.13;DP=97;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.13;SOR=0.736;VarDP=94 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:927,0:0,0,15,14 1/1:0,65:65:99:1999,195,0:0,0,31,34 +chrX 4140380 . T C 2881 . AC=3;AF=1.00;AN=3;AS_AltDP=94;AS_QD=30.97;DP=102;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.97;SOR=0.693;VarDP=94 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:784,0:0,0,13,11 1/1:0,70:70:99:2127,210,0:0,0,34,36 +chrX 4141325 . T C 2269 . AC=3;AF=1.00;AN=3;AS_AltDP=74;AS_QD=31.07;DP=76;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.07;SOR=0.992;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:776,0:0,0,9,16 1/1:0,49:49:99:1523,146,0:0,0,23,26 +chrX 4142006 . C T 2723 . AC=3;AF=1.00;AN=3;AS_AltDP=85;AS_QD=32.39;DP=89;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.39;SOR=1.101;VarDP=85 GT:AD:DP:GQ:PL:SB 1:0,35:35:99:1115,0:0,0,15,20 1/1:0,50:50:99:1638,150,0:0,0,20,30 +chrX 4142561 . C T 2682 . AC=3;AF=1.00;AN=3;AS_AltDP=83;AS_QD=32.67;DP=87;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.67;SOR=1.554;VarDP=83 GT:AD:DP:GQ:PL:SB 1:0,34:34:99:1180,0:0,0,22,12 1/1:0,49:49:99:1532,146,0:0,0,33,16 +chrX 4146236 . G C 2441 . AC=3;AF=1.00;AN=3;AS_AltDP=79;AS_QD=30.89;BaseQRankSum=-0.335;DP=84;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=30.89;ReadPosRankSum=-0.723;SOR=0.303;VarDP=80 GT:AD:DP:GQ:PL:SB 1:1,23:24:99:725,0:1,0,12,11 1/1:0,56:56:99:1746,168,0:0,0,31,25 +chrX 4146909 . C CT 1642.97 . AC=3;AF=1.00;AN=3;AS_AltDP=60;AS_QD=27.13;BaseQRankSum=-0.158;DP=69;ExcessHet=0.0000;FS=3.082;MQ=60.00;MQRankSum=0;QD=27.13;ReadPosRankSum=1.183;SOR=0.222;VarDP=62 GT:AD:DP:GQ:PL:SB 1:1,21:22:99:579,0:1,0,11,10 1/1:1,39:40:90:1103,90,0:1,0,18,21 +chrX 4147248 . T C 2296 . AC=3;AF=1.00;AN=3;AS_AltDP=72;AS_QD=32.31;DP=73;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.31;SOR=0.749;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:818,0:0,0,18,8 1/1:0,46:46:99:1508,137,0:0,0,19,27 +chrX 4147551 . A G 2675 . AC=3;AF=1.00;AN=3;AS_AltDP=82;AS_QD=32.99;DP=88;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.99;SOR=0.961;VarDP=82 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:904,0:0,0,14,12 1/1:0,56:56:99:1801,168,0:0,0,22,34 +chrX 4148838 . C T 2739 . AC=3;AF=1.00;AN=3;AS_AltDP=85;AS_QD=32.20;BaseQRankSum=-0.269;DP=89;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=32.20;ReadPosRankSum=0.446;SOR=0.233;VarDP=86 GT:AD:DP:GQ:PL:SB 1:1,34:35:99:1107,0:0,1,16,18 1/1:0,51:51:99:1662,153,0:0,0,26,25 +chrX 4149087 . TACACAC T 1941.97 . AC=3;AF=1.00;AN=3;AS_AltDP=44;AS_QD=26.01;DP=64;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=45.02;SOR=0.883;VarDP=44 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,17:17:99:.:.:765,0:.:0,0,8,9 1|1:0,27:27:82:0|1:4149087_TACACAC_T:1216,82,0:4149087:0,0,12,15 +chrX 4149141 . C G 3333 . AC=3;AF=1.00;AN=3;AS_AltDP=75;AS_QD=32.86;DP=76;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.84;SOR=0.832;VarDP=75 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,29:29:99:.:.:1294,0:.:0,0,13,16 1|1:0,46:46:99:0|1:4149087_TACACAC_T:2069,139,0:4149087:0,0,22,24 +chrX 4149143 . C G 3372 . AC=3;AF=1.00;AN=3;AS_AltDP=76;AS_QD=29.03;DP=77;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.76;SOR=0.801;VarDP=76 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,29:29:99:.:.:1294,0:.:0,0,13,16 1|1:0,47:47:99:0|1:4149087_TACACAC_T:2108,142,0:4149087:0,0,23,24 +chrX 4149191 . GCA G 3377.97 . AC=3;AF=1.00;AN=3;AS_AltDP=81;AS_QD=31.04;DP=84;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=42.19;SOR=0.934;VarDP=81 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,32:32:99:.:.:1355,0:.:0,0,10,22 1|1:0,49:49:99:0|1:4149087_TACACAC_T:2062,148,0:4149087:0,0,26,23 +chrX 4149315 . T C 659 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=15.31;BaseQRankSum=0.672;DP=79;ExcessHet=0.0000;FS=2.594;MQ=60.00;MQRankSum=0;QD=15.31;ReadPosRankSum=-0.743;SOR=0.494;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,540 0/1:20,25:45:99:.:689,0,519:12,8,12,13 +chrX 4153085 . C A 2386 . AC=3;AF=1.00;AN=3;AS_AltDP=75;AS_QD=31.79;BaseQRankSum=-0.541;DP=76;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=31.79;ReadPosRankSum=1.733;SOR=0.256;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,21:21:99:727,0:0,0,12,9 1/1:1,54:55:99:1689,132,0:0,1,24,30 +chrX 4154841 . A T 2669 . AC=3;AF=1.00;AN=3;AS_AltDP=82;AS_QD=32.52;BaseQRankSum=-0.3;DP=86;ExcessHet=0.0000;FS=3.170;MQ=59.94;MQRankSum=0;QD=32.52;ReadPosRankSum=-0.658;SOR=0.378;VarDP=83 GT:AD:DP:GQ:PL:SB 1:1,28:29:99:897,0:1,0,13,15 1/1:0,54:54:99:1802,162,0:0,0,26,28 +chrX 4155276 . C T 2619 . AC=3;AF=1.00;AN=3;AS_AltDP=83;AS_QD=31.16;BaseQRankSum=3.118;DP=87;ExcessHet=0.0000;FS=6.389;MQ=59.85;MQRankSum=0;QD=31.16;ReadPosRankSum=0.619;SOR=0.320;VarDP=85 GT:AD:DP:GQ:PL:SB 1:0,35:35:99:1131,0:0,0,20,15 1/1:2,48:50:99:1518,129,0:2,0,19,29 +chrX 4155863 . A C 638 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=15.18;BaseQRankSum=-0.13;DP=81;ExcessHet=0.0000;FS=1.130;MQ=60.00;MQRankSum=0;QD=15.18;ReadPosRankSum=0.849;SOR=0.527;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:36:99:36:0,843 0/1:20,24:44:99:.:668,0,517:9,11,12,12 +chrX 4155928 . G T 938 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=33.38;DP=84;ExcessHet=0.0000;FS=0.000;MQ=59.62;QD=33.38;SOR=0.760;VarDP=29 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,29:29:99:.:968,0:0,0,14,15 0/0:.:54:67:54:0,67,1162 +chrX 4158090 . A G 644 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=13.48;BaseQRankSum=-2.185;DP=84;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.48;ReadPosRankSum=0.691;SOR=0.660;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,397 0/1:23,27:50:99:.:674,0,615:13,10,15,12 +chrX 4159118 . A T 637 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=12.13;BaseQRankSum=-0.747;DP=96;ExcessHet=0.0000;FS=3.828;MQ=60.00;MQRankSum=0;QD=12.13;ReadPosRankSum=-0.061;SOR=0.821;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,397 0/1:27,28:55:99:.:667,0,730:11,15,16,12 +chrX 4161723 . T TTCTC 3332.97 . AC=3;AF=1.00;AN=3;AS_AltDP=77;AS_QD=30.86;DP=83;ExcessHet=0.0000;FS=0.000;MQ=57.38;QD=43.79;SOR=1.223;VarDP=77 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,31:31:99:.:.:1373,0:.:0,0,11,20 1|1:0,46:46:99:0|1:4161723_T_TTCTC:1999,140,0:4161723:0,0,19,27 +chrX 4161792 . TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCCTTCCTTCCTTCCTTCC TTTCCTTCC,T 2845.97 . AC=1,2;AF=0.333,0.667;AN=3;AS_AltDP=23,43;AS_QD=28.52,36.00;BaseQRankSum=-0.126;DP=71;ExcessHet=0.0000;FS=4.690;MQ=53.72;MQRankSum=0.674;QD=43.06;ReadPosRankSum=-1.036;SOR=1.447;VarDP=67 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,23,0:24:99:.:.:975,0,781:.:1,0,1,8 2|2:0,0,43:43:99:0|1:4161723_T_TTCTC:1910,1910,1910,129,129,0:4161723:0,0,16,27 +chrX 4163769 . A G 3146 . AC=3;AF=1.00;AN=3;AS_AltDP=97;AS_QD=32.74;DP=100;ExcessHet=0.0000;FS=0.000;MQ=59.79;QD=32.74;SOR=0.992;VarDP=97 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:1022,0:0,0,15,17 1/1:0,65:65:99:2154,195,0:0,0,27,38 +chrX 4164018 . A C 2140 . AC=3;AF=1.00;AN=3;AS_AltDP=66;AS_QD=32.88;DP=70;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.88;SOR=0.754;VarDP=66 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:814,0:0,0,10,14 1/1:0,42:42:99:1356,125,0:0,0,24,18 +chrX 4164793 . C T 2809 . AC=3;AF=1.00;AN=3;AS_AltDP=86;AS_QD=33.01;DP=90;ExcessHet=0.0000;FS=0.000;MQ=59.95;QD=33.01;SOR=0.740;VarDP=86 GT:AD:DP:GQ:PL:SB 1:0,36:36:99:1176,0:0,0,21,15 1/1:0,50:50:99:1663,150,0:0,0,21,29 +chrX 4164935 . A C 2416 . AC=3;AF=1.00;AN=3;AS_AltDP=75;AS_QD=32.61;DP=77;ExcessHet=0.0000;FS=0.000;MQ=59.86;QD=32.61;SOR=0.719;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:912,0:0,0,11,17 1/1:0,47:47:99:1534,141,0:0,0,26,21 +chrX 4165060 . CAA CA,C 962.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=33,15;AS_QD=21.47,22.44;BaseQRankSum=0.764;DP=79;ExcessHet=0.0000;FS=6.673;MQ=59.00;MQRankSum=-0.294;QD=19.65;ReadPosRankSum=-1.487;SOR=0.481;VarDP=51 GT:AD:DP:GQ:PL:SB 1:1,21,0:22:99:419,0,582:0,0,11,9 1/2:2,12,15:29:99:583,269,229,179,0,257:0,2,15,12 +chrX 4165138 . G C 2216 . AC=3;AF=1.00;AN=3;AS_AltDP=69;AS_QD=32.09;BaseQRankSum=-0.373;DP=71;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=32.09;ReadPosRankSum=-0.4;SOR=0.463;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,18:18:99:605,0:0,0,10,8 1/1:1,51:52:99:1641,121,0:1,0,32,19 +chrX 4165329 . TTTA T 3380.97 . AC=3;AF=1.00;AN=3;AS_AltDP=79;AS_QD=34.86;DP=100;ExcessHet=0.0000;FS=0.000;MQ=59.78;QD=43.29;SOR=0.824;VarDP=79 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:1082,0:0,0,10,15 1/1:0,54:54:99:2338,162,0:0,0,27,27 +chrX 4165506 . C T 2764 . AC=3;AF=1.00;AN=3;AS_AltDP=84;AS_QD=33.26;DP=86;ExcessHet=0.0000;FS=0.000;MQ=59.96;QD=33.26;SOR=0.897;VarDP=84 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:888,0:0,0,12,15 1/1:0,57:57:99:1906,171,0:0,0,34,23 +chrX 4165538 . A T 2938 . AC=3;AF=1.00;AN=3;AS_AltDP=89;AS_QD=33.35;DP=94;ExcessHet=0.0000;FS=0.000;MQ=59.96;QD=33.35;SOR=1.204;VarDP=89 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:799,0:0,0,12,13 1/1:0,64:64:99:2169,192,0:0,0,42,22 +chrX 4165571 . GAA G 2910.97 . AC=3;AF=1.00;AN=3;AS_AltDP=82;AS_QD=30.56;DP=96;ExcessHet=0.0000;FS=0.000;MQ=59.90;QD=35.98;SOR=1.220;VarDP=82 GT:AD:DP:GQ:PL:SB 1:0,20:20:99:694,0:0,0,11,9 1/1:0,62:62:99:2256,187,0:0,0,39,23 +chrX 4166550 . ATTT A 3194.97 . AC=3;AF=1.00;AN=3;AS_AltDP=73;AS_QD=29.24;DP=88;ExcessHet=0.0000;FS=0.000;MQ=59.89;QD=44.30;SOR=0.898;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:1053,0:0,0,12,12 1/1:0,49:49:99:2181,148,0:0,0,21,28 +chrX 4166847 . G A 2560 . AC=3;AF=1.00;AN=3;AS_AltDP=80;AS_QD=32.38;DP=82;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.38;SOR=0.796;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:789,0:0,0,11,13 1/1:0,56:56:99:1801,167,0:0,0,27,29 +chrX 4167626 . A T 2783 . AC=3;AF=1.00;AN=3;AS_AltDP=88;AS_QD=31.97;DP=90;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.97;SOR=0.887;VarDP=88 GT:AD:DP:GQ:PL:SB 1:0,22:22:99:710,0:0,0,9,13 1/1:0,66:66:99:2103,197,0:0,0,31,35 +chrX 4167780 . G A 2611 . AC=3;AF=1.00;AN=3;AS_AltDP=79;AS_QD=33.43;DP=82;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.43;SOR=0.824;VarDP=79 GT:AD:DP:GQ:PL:SB 1:0,20:20:99:695,0:0,0,14,6 1/1:0,59:59:99:1946,177,0:0,0,28,31 +chrX 4168173 . G T 2793 . AC=3;AF=1.00;AN=3;AS_AltDP=86;AS_QD=32.45;BaseQRankSum=5.389;DP=89;ExcessHet=0.0000;FS=3.163;MQ=60.00;MQRankSum=0;QD=32.45;ReadPosRankSum=0;SOR=0.371;VarDP=87 GT:AD:DP:GQ:PL:SB 1:1,27:28:99:929,0:1,0,11,16 1/1:0,59:59:99:1894,176,0:0,0,30,29 +chrX 4168757 . C T 2967 . AC=3;AF=1.00;AN=3;AS_AltDP=93;AS_QD=32.23;DP=96;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.23;SOR=0.758;VarDP=93 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:893,0:0,0,10,17 1/1:0,66:66:99:2104,197,0:0,0,38,28 +chrX 4169346 . C CA 3058.97 . AC=3;AF=1.00;AN=3;AS_AltDP=77;AS_QD=28.54;DP=77;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=40.23;SOR=1.150;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:916,0:0,0,11,12 1/1:0,54:54:99:2182,163,0:0,0,35,19 +chrX 4169891 . T A 3686 . AC=3;AF=1.00;AN=3;AS_AltDP=113;AS_QD=32.60;BaseQRankSum=2.612;DP=116;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=32.60;ReadPosRankSum=-1.414;SOR=0.251;VarDP=114 GT:AD:DP:GQ:PL:SB 1:0,38:38:99:1269,0:0,0,21,17 1/1:1,75:76:99:2447,218,0:0,1,36,39 +chrX 4171211 . C T 3023 . AC=3;AF=1.00;AN=3;AS_AltDP=91;AS_QD=33.55;DP=93;ExcessHet=0.0000;FS=0.000;MQ=59.95;QD=33.55;SOR=0.760;VarDP=91 GT:AD:DP:GQ:PL:SB 1:0,40:40:99:1325,0:0,0,20,20 1/1:0,51:51:99:1728,153,0:0,0,24,27 +chrX 4172641 . C A 2605 . AC=3;AF=1.00;AN=3;AS_AltDP=85;AS_QD=31.00;DP=86;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.00;SOR=0.867;VarDP=85 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:868,0:0,0,17,12 1/1:0,56:56:99:1767,167,0:0,0,29,27 +chrX 4173131 . G A 2365 . AC=3;AF=1.00;AN=3;AS_AltDP=75;AS_QD=31.93;DP=78;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.93;SOR=1.091;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,35:35:99:1131,0:0,0,14,21 1/1:0,40:40:99:1264,120,0:0,0,17,23 +chrX 4173519 . T G 2314 . AC=3;AF=1.00;AN=3;AS_AltDP=76;AS_QD=30.44;BaseQRankSum=-0.512;DP=79;ExcessHet=0.0000;FS=4.094;MQ=60.00;MQRankSum=0;QD=30.44;ReadPosRankSum=1.449;SOR=1.033;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,22:22:99:649,0:0,0,13,9 1/1:1,54:55:99:1695,130,0:0,1,34,20 +chrX 4173938 . G A 2492 . AC=3;AF=1.00;AN=3;AS_AltDP=76;AS_QD=33.18;DP=77;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.18;SOR=0.859;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:780,0:0,0,9,14 1/1:0,53:53:99:1742,159,0:0,0,26,27 +chrX 4174029 . CT C 1449.97 . AC=3;AF=1.00;AN=3;AS_AltDP=53;AS_QD=27.57;BaseQRankSum=-0.393;DP=66;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=27.57;ReadPosRankSum=1.213;SOR=0.282;VarDP=54 GT:AD:DP:GQ:PL:SB 1:0,14:14:99:396,0:0,0,8,6 1/1:1,39:40:99:1093,111,0:1,0,18,21 +chrX 4174373 . C T 1950 . AC=2;AF=0.667;AN=3;AS_AltDP=65;AS_QD=23.02;BaseQRankSum=-0.989;DP=87;ExcessHet=0.0000;FS=3.453;MQ=60.00;MQRankSum=0;QD=23.02;ReadPosRankSum=0.764;SOR=0.748;VarDP=86 GT:AD:DP:GQ:PL:SB 1:0,42:42:99:1388,0:0,0,21,21 0/1:21,23:44:99:592,0,568:12,9,8,15 +chrX 4174697 . C T 2342 . AC=3;AF=1.00;AN=3;AS_AltDP=73;AS_QD=32.05;BaseQRankSum=2.938;DP=77;ExcessHet=0.0000;FS=0.000;MQ=55.64;MQRankSum=-0.68;QD=32.05;ReadPosRankSum=-1.272;SOR=0.446;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:902,0:0,0,17,12 1/1:1,44:45:99:1470,125,0:1,0,27,17 +chrX 4174796 . T A 1784 . AC=3;AF=1.00;AN=3;AS_AltDP=59;AS_QD=29.74;BaseQRankSum=2.823;DP=63;ExcessHet=0.0000;FS=0.000;MQ=55.38;MQRankSum=2.76;QD=29.74;ReadPosRankSum=-0.765;SOR=0.950;VarDP=61 GT:AD:DP:GQ:PL:SB 1:2,21:23:99:610,0:1,1,10,11 1/1:0,38:38:99:1204,113,0:0,0,23,15 +chrX 4174865 . C G 2389 . AC=3;AF=1.00;AN=3;AS_AltDP=75;AS_QD=32.25;DP=79;ExcessHet=0.0000;FS=0.000;MQ=59.86;QD=32.25;SOR=1.091;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:843,0:0,0,14,11 1/1:0,50:50:99:1576,148,0:0,0,30,20 +chrX 4175625 . G A 2562 . AC=3;AF=1.00;AN=3;AS_AltDP=78;AS_QD=33.23;DP=80;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.23;SOR=1.108;VarDP=78 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:823,0:0,0,10,15 1/1:0,53:53:99:1769,159,0:0,0,22,31 +chrX 4176304 . T C 3385 . AC=3;AF=1.00;AN=3;AS_AltDP=111;AS_QD=30.77;DP=113;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.77;SOR=0.748;VarDP=111 GT:AD:DP:GQ:PL:SB 1:0,38:38:99:1185,0:0,0,19,19 1/1:0,73:73:99:2230,217,0:0,0,38,35 +chrX 4176652 . C T 2655 . AC=3;AF=1.00;AN=3;AS_AltDP=80;AS_QD=33.56;DP=82;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.56;SOR=1.031;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:834,0:0,0,12,12 1/1:0,56:56:99:1851,168,0:0,0,22,34 +chrX 4178742 . A G 2685 . AC=3;AF=1.00;AN=3;AS_AltDP=82;AS_QD=33.11;DP=84;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.11;SOR=1.292;VarDP=82 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:1048,0:0,0,23,8 1/1:0,51:51:99:1667,153,0:0,0,28,23 +chrX 4179477 . GTT GT,G 1126.97 . AC=3,0;AF=1.00,0.00;AN=3;AS_AltDP=44,3;AS_QD=26.50,33.00;DP=62;ExcessHet=0.0000;FS=0.000;MQ=59.76;QD=24.81;SOR=1.659;VarDP=47 GT:AD:DP:GQ:PL:SB 1:0,11,0:11:99:284,0,284:0,0,8,3 1/1:0,33,3:36:29:882,107,0,787,29,783:0,0,24,12 +chrX 4180461 . A G 2577 . AC=3;AF=1.00;AN=3;AS_AltDP=82;AS_QD=31.79;DP=86;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.79;SOR=1.292;VarDP=82 GT:AD:DP:GQ:PL:SB 1:0,21:21:99:700,0:0,0,6,15 1/1:0,61:61:99:1907,181,0:0,0,25,36 +chrX 4181484 . A T 1823 . AC=3;AF=1.00;AN=3;AS_AltDP=56;AS_QD=30.38;DP=64;ExcessHet=0.0000;FS=19.564;MQ=58.52;MQRankSum=-0.24;QD=30.38;SOR=0.995;VarDP=61 GT:AD:DP:GQ:PL:SB 1:3,16:19:99:507,0:0,3,9,7 1/1:2,40:42:84:1346,84,0:0,2,26,14 +chrX 4181485 . CAA CA,C 1708.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=32,13;AS_QD=29.31,28.72;DP=85;ExcessHet=0.0000;FS=19.056;MQ=58.20;MQRankSum=-0.283;QD=34.96;SOR=0.964;VarDP=50 GT:AD:DP:GQ:PL:SB 1:3,16,0:19:99:507,0,564:0,3,9,7 1/2:2,16,13:31:99:1241,201,118,275,0,333:0,2,19,10 +chrX 4181660 . C T 2432 . AC=3;AF=1.00;AN=3;AS_AltDP=74;AS_QD=33.27;DP=78;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.27;SOR=0.927;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:1082,0:0,0,14,18 1/1:0,42:42:99:1380,126,0:0,0,19,23 +chrX 4182528 . TCTGA T 3123.97 . AC=3;AF=1.00;AN=3;AS_AltDP=71;AS_QD=27.50;DP=77;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.55;SOR=0.840;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:1058,0:0,0,12,12 1/1:0,47:47:99:2105,142,0:0,0,26,21 +chrX 4182777 . GT G 1182.97 . AC=3;AF=1.00;AN=3;AS_AltDP=50;AS_QD=22.63;BaseQRankSum=-0.629;DP=78;ExcessHet=0.0000;FS=0.000;MQ=59.57;MQRankSum=3.318;QD=22.63;ReadPosRankSum=0.935;SOR=0.952;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,19:20:99:.:.:665,0:.:0,1,10,9 1|1:3,31:34:37:0|1:4182777_GT_G:557,37,0:4182777:2,1,12,19 +chrX 4182779 . T G 1192 . AC=3;AF=1.00;AN=3;AS_AltDP=50;AS_QD=22.63;BaseQRankSum=1.991;DP=78;ExcessHet=0.0000;FS=0.000;MQ=59.57;MQRankSum=3.318;QD=22.63;ReadPosRankSum=1.336;SOR=0.952;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,19:20:99:.:.:665,0:.:0,1,10,9 1|1:3,31:34:37:0|1:4182777_GT_G:557,37,0:4182777:2,1,12,19 +chrX 4186201 . A G 2466 . AC=3;AF=1.00;AN=3;AS_AltDP=75;AS_QD=33.28;DP=76;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.28;SOR=0.832;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,16:16:99:545,0:0,0,6,10 1/1:0,59:59:99:1951,177,0:0,0,29,30 +chrX 4187979 . C T 2611 . AC=3;AF=1.00;AN=3;AS_AltDP=80;AS_QD=33.01;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.01;SOR=1.096;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:886,0:0,0,14,13 1/1:0,53:53:99:1755,159,0:0,0,33,20 +chrX 4188081 . A C 168 . AC=1;AF=0.333;AN=3;AS_AltDP=10;AS_QD=5.50;BaseQRankSum=-2.679;DP=60;ExcessHet=0.0000;FS=41.816;MQ=60.00;MQRankSum=0;QD=5.50;ReadPosRankSum=1.242;SOR=3.221;VarDP=36 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:23:99:23:.:.:0,342 0|1:26,10:36:99:.:0|1:4188081_A_C:198,0,921:4188081:4,22,9,1 +chrX 4188086 . A C 172 . AC=1;AF=0.333;AN=3;AS_AltDP=10;AS_QD=5.77;BaseQRankSum=-1.458;DP=59;ExcessHet=0.0000;FS=40.593;MQ=60.00;MQRankSum=0;QD=5.77;ReadPosRankSum=0.26;SOR=3.221;VarDP=35 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:23:99:23:.:.:0,342 0|1:25,10:35:99:.:0|1:4188081_A_C:202,0,865:4188081:4,21,9,1 +chrX 4188197 . C CTTT 1644.97 . AC=3;AF=1.00;AN=3;AS_AltDP=52;AS_QD=32.38;DP=69;ExcessHet=0.0000;FS=0.000;MQ=59.27;QD=32.38;SOR=0.770;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,10:10:99:327,0:0,0,4,6 1/1:0,42:42:99:1357,124,0:0,0,21,21 +chrX 4188266 . ACTCATTGAACATGCACGTG A 2120.97 . AC=3;AF=1.00;AN=3;AS_AltDP=49;AS_QD=30.40;BaseQRankSum=0;DP=52;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=43.20;ReadPosRankSum=1.738;SOR=0.892;VarDP=50 GT:AD:DP:GQ:PL:SB 1:1,13:14:99:540,0:0,1,5,8 1/1:0,36:36:99:1620,109,0:0,0,9,27 +chrX 4188812 . G A 2394 . AC=3;AF=1.00;AN=3;AS_AltDP=75;AS_QD=32.32;DP=79;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.32;SOR=0.832;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:828,0:0,0,11,14 1/1:0,50:50:99:1596,150,0:0,0,29,21 +chrX 4188869 . G A 2292 . AC=3;AF=1.00;AN=3;AS_AltDP=72;AS_QD=32.25;DP=73;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.25;SOR=0.934;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:764,0:0,0,14,9 1/1:0,49:49:99:1558,147,0:0,0,26,23 +chrX 4189450 . T C 1512 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=19.28;BaseQRankSum=-0.059;DP=80;ExcessHet=0.0000;FS=0.876;MQ=60.00;MQRankSum=0;QD=19.28;ReadPosRankSum=1.373;SOR=0.569;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:829,0:0,0,15,10 0/1:28,27:55:99:713,0,747:13,15,11,16 +chrX 4191197 . T C 3225 . AC=3;AF=1.00;AN=3;AS_AltDP=102;AS_QD=31.91;DP=104;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.91;SOR=0.815;VarDP=102 GT:AD:DP:GQ:PL:SB 1:0,43:43:99:1395,0:0,0,22,21 1/1:0,59:59:99:1860,176,0:0,0,32,27 +chrX 4191607 . T C 759 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=31.56;DP=85;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.56;SOR=0.941;VarDP=25 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,25:25:99:.:789,0:0,0,11,14 0/0:.:59:99:59:0,117,1643 +chrX 4191806 . G A 3230 . AC=3;AF=1.00;AN=3;AS_AltDP=77;AS_QD=34.11;DP=78;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=42.34;SOR=1.012;VarDP=77 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,21:21:99:.:.:873,0:.:0,0,10,11 1|1:0,56:56:99:0|1:4191806_G_A:2387,169,0:4191806:0,0,23,33 +chrX 4191827 . T C 3257 . AC=3;AF=1.00;AN=3;AS_AltDP=78;AS_QD=27.37;DP=79;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=41.61;SOR=0.446;VarDP=79 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,24:25:99:.:.:974,0:.:0,1,12,12 1|1:0,54:54:99:0|1:4191806_G_A:2313,162,0:4191806:0,0,19,35 +chrX 4191981 . C T 2629 . AC=3;AF=1.00;AN=3;AS_AltDP=80;AS_QD=33.24;DP=83;ExcessHet=0.0000;FS=0.000;MQ=59.89;QD=33.24;SOR=1.165;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:913,0:0,0,21,7 1/1:0,52:52:99:1746,156,0:0,0,27,25 +chrX 4192146 . T A 2403 . AC=3;AF=1.00;AN=3;AS_AltDP=77;AS_QD=31.19;BaseQRankSum=2.183;DP=81;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=31.19;ReadPosRankSum=0.589;SOR=0.396;VarDP=78 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:898,0:0,0,10,18 1/1:1,49:50:99:1535,139,0:0,1,22,27 +chrX 4192266 . C T 2499 . AC=3;AF=1.00;AN=3;AS_AltDP=80;AS_QD=31.61;DP=87;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.61;SOR=0.796;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:773,0:0,0,9,16 1/1:0,55:55:99:1756,165,0:0,0,29,26 +chrX 4192630 . G A 2961 . AC=3;AF=1.00;AN=3;AS_AltDP=95;AS_QD=31.48;DP=97;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.48;SOR=0.848;VarDP=95 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:967,0:0,0,16,15 1/1:0,64:64:99:2024,191,0:0,0,28,36 +chrX 4193076 . T C 2271 . AC=3;AF=1.00;AN=3;AS_AltDP=70;AS_QD=32.87;DP=71;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.87;SOR=1.085;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,19:19:99:640,0:0,0,12,7 1/1:0,51:51:99:1661,153,0:0,0,29,22 +chrX 4193443 . C T 2798 . AC=3;AF=1.00;AN=3;AS_AltDP=86;AS_QD=32.88;DP=89;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.88;SOR=0.740;VarDP=86 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:958,0:0,0,12,18 1/1:0,56:56:99:1870,168,0:0,0,30,26 +chrX 4193692 . G GGAT 3994.97 . AC=3;AF=1.00;AN=3;AS_AltDP=90;AS_QD=29.57;DP=100;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.82;SOR=0.784;VarDP=90 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:1470,0:0,0,16,17 1/1:0,57:57:99:2564,171,0:0,0,27,30 +chrX 4194182 . A G 2473 . AC=3;AF=1.00;AN=3;AS_AltDP=82;AS_QD=30.52;DP=87;ExcessHet=0.0000;FS=0.000;MQ=59.94;QD=30.52;SOR=1.085;VarDP=82 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:942,0:0,0,14,16 1/1:0,52:52:99:1561,154,0:0,0,34,18 +chrX 4194286 . A ATT 2076.97 . AC=3;AF=1.00;AN=3;AS_AltDP=64;AS_QD=33.06;DP=81;ExcessHet=0.0000;FS=0.000;MQ=59.73;QD=33.06;SOR=0.892;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,18:18:99:611,0:0,0,9,9 1/1:0,46:46:99:1505,138,0:0,0,26,20 +chrX 4194429 . C T 2500 . AC=3;AF=1.00;AN=3;AS_AltDP=77;AS_QD=32.86;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.86;SOR=0.719;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:1046,0:0,0,14,18 1/1:0,45:45:99:1484,134,0:0,0,24,21 +chrX 4194772 . C T 2417 . AC=3;AF=1.00;AN=3;AS_AltDP=76;AS_QD=31.78;BaseQRankSum=-0.177;DP=78;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=31.78;ReadPosRankSum=-0.773;SOR=0.245;VarDP=77 GT:AD:DP:GQ:PL:SB 1:1,17:18:99:536,0:0,1,9,8 1/1:0,59:59:99:1911,177,0:0,0,28,31 +chrX 4196554 . C A 2319 . AC=3;AF=1.00;AN=3;AS_AltDP=71;AS_QD=32.63;BaseQRankSum=0;DP=74;ExcessHet=0.0000;FS=3.660;MQ=60.00;MQRankSum=0;QD=32.63;ReadPosRankSum=-1.488;SOR=0.735;VarDP=72 GT:AD:DP:GQ:PL:SB 1:1,20:21:99:659,0:0,1,14,6 1/1:0,51:51:99:1690,153,0:0,0,27,24 +chrX 4196850 . T A 3150 . AC=3;AF=1.00;AN=3;AS_AltDP=94;AS_QD=33.83;DP=95;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.83;SOR=0.693;VarDP=94 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:1069,0:0,0,17,14 1/1:0,63:63:99:2111,189,0:0,0,30,33 +chrX 4197093 . A G 2635 . AC=3;AF=1.00;AN=3;AS_AltDP=81;AS_QD=32.90;DP=82;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.90;SOR=1.497;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,34:34:99:1117,0:0,0,11,23 1/1:0,47:47:99:1548,141,0:0,0,17,30 +chrX 4197356 . G C 2292 . AC=3;AF=1.00;AN=3;AS_AltDP=70;AS_QD=33.17;DP=72;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.17;SOR=1.163;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,20:20:99:664,0:0,0,13,7 1/1:0,50:50:99:1658,150,0:0,0,29,21 +chrX 4197411 . C A 2339 . AC=3;AF=1.00;AN=3;AS_AltDP=71;AS_QD=32.90;BaseQRankSum=4.801;DP=72;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=32.90;ReadPosRankSum=-0.236;SOR=0.414;VarDP=72 GT:AD:DP:GQ:PL:SB 1:1,21:22:99:716,0:1,0,14,7 1/1:0,50:50:99:1653,150,0:0,0,28,22 +chrX 4197467 . C A 2267 . AC=3;AF=1.00;AN=3;AS_AltDP=71;AS_QD=31.90;BaseQRankSum=-0.492;DP=77;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=31.90;ReadPosRankSum=-0.186;SOR=0.258;VarDP=72 GT:AD:DP:GQ:PL:SB 1:1,27:28:99:817,0:1,0,16,11 1/1:0,44:44:99:1480,132,0:0,0,21,23 +chrX 4198421 . C G 3590 . AC=3;AF=1.00;AN=3;AS_AltDP=81;AS_QD=24.77;DP=81;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.69;SOR=1.416;VarDP=81 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,25:25:99:.:.:1102,0:.:0,0,16,9 1|1:0,56:56:99:0|1:4198421_C_G:2518,169,0:4198421:0,0,36,20 +chrX 4198423 . G C 3590 . AC=3;AF=1.00;AN=3;AS_AltDP=81;AS_QD=23.25;DP=82;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.69;SOR=1.416;VarDP=81 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,25:25:99:.:.:1102,0:.:0,0,16,9 1|1:0,56:56:99:0|1:4198421_C_G:2518,169,0:4198421:0,0,36,20 +chrX 4198435 . C T 2683 . AC=3;AF=1.00;AN=3;AS_AltDP=82;AS_QD=33.09;DP=82;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.09;SOR=1.367;VarDP=82 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:818,0:0,0,16,10 1/1:0,56:56:99:1895,168,0:0,0,36,20 +chrX 4198990 . T C 2321 . AC=3;AF=1.00;AN=3;AS_AltDP=74;AS_QD=31.77;DP=78;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.77;SOR=0.927;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,20:20:99:620,0:0,0,6,14 1/1:0,54:54:99:1731,162,0:0,0,27,27 +chrX 4199254 . G C 3226 . AC=3;AF=1.00;AN=3;AS_AltDP=74;AS_QD=28.91;DP=74;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.00;SOR=0.747;VarDP=74 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,18:18:99:.:.:810,0:.:0,0,13,5 1|1:0,56:56:99:0|1:4199254_G_C:2446,169,0:4199254:0,0,23,33 +chrX 4199261 . G C 3211 . AC=3;AF=1.00;AN=3;AS_AltDP=73;AS_QD=27.09;DP=73;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.40;SOR=0.776;VarDP=73 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,18:18:99:.:.:810,0:.:0,0,13,5 1|1:0,55:55:99:0|1:4199254_G_C:2431,166,0:4199254:0,0,22,33 +chrX 4199370 . T A 2540 . AC=3;AF=1.00;AN=3;AS_AltDP=77;AS_QD=33.38;DP=80;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.38;SOR=0.772;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:1010,0:0,0,15,15 1/1:0,47:47:99:1560,141,0:0,0,22,25 +chrX 4199406 . C G 2585 . AC=3;AF=1.00;AN=3;AS_AltDP=82;AS_QD=31.89;DP=85;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.89;SOR=0.693;VarDP=82 GT:AD:DP:GQ:PL:SB 1:0,38:38:99:1231,0:0,0,22,16 1/1:0,44:44:99:1384,131,0:0,0,19,25 +chrX 4199450 . G C 2488 . AC=3;AF=1.00;AN=3;AS_AltDP=77;AS_QD=32.70;DP=80;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.70;SOR=0.887;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,38:38:99:1189,0:0,0,21,17 1/1:0,39:39:99:1329,117,0:0,0,14,25 +chrX 4199683 . G A 2709 . AC=3;AF=1.00;AN=3;AS_AltDP=84;AS_QD=32.61;DP=88;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.61;SOR=0.791;VarDP=84 GT:AD:DP:GQ:PL:SB 1:0,37:37:99:1205,0:0,0,17,20 1/1:0,47:47:99:1534,141,0:0,0,27,20 +chrX 4200637 . G T 2909 . AC=3;AF=1.00;AN=3;AS_AltDP=91;AS_QD=31.60;BaseQRankSum=-0.343;DP=97;ExcessHet=0.0000;FS=6.163;MQ=60.00;MQRankSum=0;QD=31.60;ReadPosRankSum=-0.158;SOR=0.222;VarDP=93 GT:AD:DP:GQ:PL:SB 1:1,32:33:99:1018,0:1,0,16,16 1/1:1,59:60:99:1921,145,0:1,0,28,31 +chrX 4200821 . T G 2779 . AC=3;AF=1.00;AN=3;AS_AltDP=88;AS_QD=31.21;BaseQRankSum=2.324;DP=93;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=31.21;ReadPosRankSum=1.053;SOR=0.941;VarDP=90 GT:AD:DP:GQ:PL:SB 1:1,27:28:99:844,0:0,1,11,16 1/1:1,61:62:99:1965,175,0:1,0,28,33 +chrX 4201285 . TA T 2949.97 . AC=3;AF=1.00;AN=3;AS_AltDP=80;AS_QD=26.98;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=37.36;SOR=0.968;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:1160,0:0,0,17,14 1/1:0,49:49:99:1829,147,0:0,0,28,21 +chrX 4201601 . A G 2746 . AC=3;AF=1.00;AN=3;AS_AltDP=88;AS_QD=31.55;DP=92;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.55;SOR=0.693;VarDP=88 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:980,0:0,0,17,16 1/1:0,55:55:99:1796,165,0:0,0,27,28 +chrX 4201800 . A G 2820 . AC=3;AF=1.00;AN=3;AS_AltDP=84;AS_QD=33.93;DP=85;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.93;SOR=0.843;VarDP=84 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:953,0:0,0,14,14 1/1:0,56:56:99:1897,168,0:0,0,31,25 +chrX 4201819 . C T 2497 . AC=3;AF=1.00;AN=3;AS_AltDP=79;AS_QD=31.99;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.99;SOR=0.770;VarDP=79 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:732,0:0,0,11,12 1/1:0,56:56:99:1795,167,0:0,0,30,26 +chrX 4202648 . G T 2465 . AC=3;AF=1.00;AN=3;AS_AltDP=76;AS_QD=32.83;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.83;SOR=1.270;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:823,0:0,0,17,7 1/1:0,52:52:99:1672,156,0:0,0,30,22 +chrX 4203146 . T C 2494 . AC=3;AF=1.00;AN=3;AS_AltDP=78;AS_QD=31.95;BaseQRankSum=-0.424;DP=84;ExcessHet=0.0000;FS=3.791;MQ=60.00;MQRankSum=0;QD=31.95;ReadPosRankSum=0.977;SOR=0.824;VarDP=79 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:783,0:0,0,17,7 1/1:1,54:55:99:1741,131,0:0,1,29,25 +chrX 4203217 . G T 577 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=10.47;BaseQRankSum=-1.228;DP=93;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=10.47;ReadPosRankSum=-0.872;SOR=0.746;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,823 0/1:33,25:58:99:.:607,0,921:15,18,11,14 +chrX 4203268 . A G 2818 . AC=3;AF=1.00;AN=3;AS_AltDP=86;AS_QD=33.12;DP=86;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.12;SOR=0.839;VarDP=86 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:1097,0:0,0,19,14 1/1:0,53:53:99:1751,159,0:0,0,21,32 +chrX 4203574 . T C 3495 . AC=3;AF=1.00;AN=3;AS_AltDP=80;AS_QD=28.93;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.06;SOR=0.796;VarDP=80 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,31:31:99:.:.:1372,0:.:0,0,10,21 1|1:0,49:49:99:0|1:4203574_T_C:2153,147,0:4203574:0,0,28,21 +chrX 4203584 . T G 3521 . AC=3;AF=1.00;AN=3;AS_AltDP=81;AS_QD=31.08;DP=85;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.84;SOR=0.718;VarDP=81 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,30:30:99:.:.:1338,0:.:0,0,10,20 1|1:0,51:51:99:0|1:4203574_T_C:2213,153,0:4203574:0,0,31,20 +chrX 4204671 . GA G 2474.97 . AC=3;AF=1.00;AN=3;AS_AltDP=72;AS_QD=34.44;BaseQRankSum=-0.315;DP=77;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=34.44;ReadPosRankSum=0.072;SOR=0.297;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:892,0:0,0,14,11 1/1:1,47:48:99:1622,109,0:1,0,25,22 +chrX 4205316 . A G 2069 . AC=3;AF=1.00;AN=3;AS_AltDP=64;AS_QD=32.80;DP=67;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.80;SOR=1.044;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,21:21:99:707,0:0,0,11,10 1/1:0,43:43:99:1392,129,0:0,0,26,17 +chrX 4205715 . A ACTCT 3119.97 . AC=3;AF=1.00;AN=3;AS_AltDP=72;AS_QD=27.63;DP=83;ExcessHet=0.0000;FS=0.000;MQ=59.98;QD=43.88;SOR=1.002;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:1281,0:0,0,18,12 1/1:0,42:42:99:1878,126,0:0,0,23,19 +chrX 4205948 . A G 2582 . AC=3;AF=1.00;AN=3;AS_AltDP=81;AS_QD=31.85;BaseQRankSum=1.805;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=31.85;ReadPosRankSum=-0.116;SOR=0.327;VarDP=82 GT:AD:DP:GQ:PL:SB 1:1,29:30:99:904,0:0,1,13,16 1/1:0,52:52:99:1708,156,0:0,0,23,29 +chrX 4206501 . G GT 461.97 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=10.44;BaseQRankSum=1.041;DP=77;ExcessHet=0.0000;FS=2.527;MQ=60.00;MQRankSum=0;QD=10.44;ReadPosRankSum=-1.156;SOR=1.242;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:25:99:25:0,408 0/1:23,25:48:99:.:501,0,458:12,11,16,9 +chrX 4207192 . A T 2376 . AC=3;AF=1.00;AN=3;AS_AltDP=73;AS_QD=32.96;DP=76;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.96;SOR=0.963;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:912,0:0,0,18,10 1/1:0,45:45:99:1494,135,0:0,0,23,22 +chrX 4207316 . T TA 1521.97 . AC=3;AF=1.00;AN=3;AS_AltDP=65;AS_QD=23.30;BaseQRankSum=-0.674;DP=82;ExcessHet=0.0000;FS=6.220;MQ=59.65;MQRankSum=-0.231;QD=23.30;ReadPosRankSum=-0.306;SOR=0.268;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,22:22:99:535,0:0,0,12,10 1/1:2,43:45:82:1026,82,0:2,0,19,24 +chrX 4207476 . G A 2358 . AC=3;AF=1.00;AN=3;AS_AltDP=74;AS_QD=32.27;DP=74;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.27;SOR=0.927;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,21:21:99:690,0:0,0,11,10 1/1:0,53:53:99:1698,159,0:0,0,30,23 +chrX 4208042 . T C 2135 . AC=3;AF=1.00;AN=3;AS_AltDP=67;AS_QD=32.31;DP=70;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.31;SOR=1.609;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:864,0:0,0,10,16 1/1:0,41:41:99:1301,122,0:0,0,12,29 +chrX 4209527 . C A 2252 . AC=3;AF=1.00;AN=3;AS_AltDP=68;AS_QD=33.56;DP=69;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.56;SOR=0.814;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:1011,0:0,0,15,15 1/1:0,38:38:99:1271,114,0:0,0,21,17 +chrX 4212256 . G A 2671 . AC=3;AF=1.00;AN=3;AS_AltDP=83;AS_QD=32.54;DP=89;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.54;SOR=0.717;VarDP=83 GT:AD:DP:GQ:PL:SB 1:0,38:38:99:1249,0:0,0,19,19 1/1:0,45:45:99:1452,134,0:0,0,23,22 +chrX 4213488 . G A 2631 . AC=3;AF=1.00;AN=3;AS_AltDP=80;AS_QD=32.85;BaseQRankSum=2.854;DP=84;ExcessHet=0.0000;FS=0.000;MQ=59.94;MQRankSum=0;QD=32.85;ReadPosRankSum=0.34;SOR=0.223;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:829,0:0,0,12,13 1/1:1,55:56:99:1832,158,0:1,0,28,27 +chrX 4214880 . A AT 1627.97 . AC=3;AF=1.00;AN=3;AS_AltDP=64;AS_QD=26.05;DP=71;ExcessHet=0.0000;FS=0.000;MQ=59.93;QD=26.05;SOR=1.127;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,21:21:99:561,0:0,0,11,10 1/1:0,43:43:99:1106,127,0:0,0,27,16 +chrX 4215202 . A G 3291 . AC=3;AF=1.00;AN=3;AS_AltDP=78;AS_QD=32.08;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=42.58;SOR=0.798;VarDP=78 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,26:26:99:.:.:1116,0:.:0,0,13,13 1|1:0,52:52:99:0|1:4215202_A_G:2205,156,0:4215202:0,0,28,24 +chrX 4215219 . C A 3236 . AC=3;AF=1.00;AN=3;AS_AltDP=77;AS_QD=28.56;DP=81;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=42.42;SOR=0.828;VarDP=77 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,23:23:99:.:.:1012,0:.:0,0,12,11 1|1:0,54:54:99:0|1:4215202_A_G:2254,162,0:4215202:0,0,29,25 +chrX 4215434 . C T 1650 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=17.14;BaseQRankSum=-2.757;DP=102;ExcessHet=0.0000;FS=0.760;MQ=60.00;MQRankSum=0;QD=17.14;ReadPosRankSum=1.792;SOR=0.602;VarDP=98 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:864,0:0,0,11,15 0/1:40,32:72:99:816,0,1149:21,19,18,14 +chrX 4215501 . A G 3163 . AC=3;AF=1.00;AN=3;AS_AltDP=99;AS_QD=32.25;DP=102;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.25;SOR=0.713;VarDP=99 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:955,0:0,0,16,14 1/1:0,69:69:99:2238,207,0:0,0,34,35 +chrX 4215799 . C T 2580 . AC=3;AF=1.00;AN=3;AS_AltDP=80;AS_QD=32.22;BaseQRankSum=2.407;DP=86;ExcessHet=0.0000;FS=3.174;MQ=60.00;MQRankSum=0;QD=32.22;ReadPosRankSum=-1.204;SOR=0.382;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,22:22:99:725,0:0,0,12,10 1/1:1,58:59:99:1885,167,0:1,0,26,32 +chrX 4215921 . G T 2911 . AC=3;AF=1.00;AN=3;AS_AltDP=90;AS_QD=32.68;DP=92;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.68;SOR=1.364;VarDP=90 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:968,0:0,0,20,9 1/1:0,61:61:99:1973,183,0:0,0,37,24 +chrX 4216648 . C G 2513 . AC=3;AF=1.00;AN=3;AS_AltDP=84;AS_QD=30.27;DP=88;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.27;SOR=0.693;VarDP=84 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:913,0:0,0,16,12 1/1:0,56:56:99:1630,167,0:0,0,26,30 +chrX 4216809 . C A 1846 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=20.17;BaseQRankSum=0.242;DP=97;ExcessHet=0.0000;FS=1.795;MQ=60.00;MQRankSum=0;QD=20.17;ReadPosRankSum=1.682;SOR=0.956;VarDP=93 GT:AD:DP:GQ:PL:SB 1:0,35:35:99:1207,0:0,0,21,14 0/1:32,26:58:99:669,0,843:17,15,15,11 +chrX 4216979 . G A 2548 . AC=3;AF=1.00;AN=3;AS_AltDP=78;AS_QD=33.05;DP=81;ExcessHet=0.0000;FS=0.000;MQ=59.93;QD=33.05;SOR=1.670;VarDP=78 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:992,0:0,0,10,20 1/1:0,48:48:99:1586,144,0:0,0,15,33 +chrX 4217278 . AAAAAATATATAT AAT,A 137.97 . AC=2,0;AF=0.667,0.00;AN=3;AS_AltDP=8,0;AS_QD=11.80,0.00;BaseQRankSum=0;DP=48;ExcessHet=0.0000;FS=2.081;MQ=57.99;MQRankSum=0.124;QD=11.80;ReadPosRankSum=-0.003;SOR=1.061;VarDP=15 GT:AD:DP:GQ:PL:SB 1:0,3,0:3:99:126,0,126:0,0,2,1 0/1:7,5,0:12:51:51,0,300,113,166,608:3,4,3,2 +chrX 4217458 . C CAAAAAAAAAA,CAAAAAAAAAAAA 838.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=2,5;AS_QD=31.08,34.33;DP=44;ExcessHet=0.0000;FS=0.000;MQ=56.83;QD=125.43;SOR=0.941;VarDP=7 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:16:25:13:0,25,25 1/2:0,2,5:7:34:.:878,136,74,96,0,34:0,0,3,4 +chrX 4217559 . C G 1982 . AC=3;AF=1.00;AN=3;AS_AltDP=65;AS_QD=30.95;DP=68;ExcessHet=0.0000;FS=0.000;MQ=59.17;QD=30.95;SOR=1.249;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,18:18:99:540,0:0,0,11,7 1/1:0,47:47:99:1472,140,0:0,0,29,18 +chrX 4217657 . G A 1355 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=19.51;BaseQRankSum=2.761;DP=76;ExcessHet=0.0000;FS=0.957;MQ=59.89;MQRankSum=-0.921;QD=19.51;ReadPosRankSum=-0.641;SOR=0.919;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,21:21:99:670,0:0,0,12,9 0/1:24,26:50:99:715,0,504:12,12,14,12 +chrX 4217933 . A C 2754 . AC=3;AF=1.00;AN=3;AS_AltDP=87;AS_QD=32.00;DP=89;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.00;SOR=0.763;VarDP=87 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:899,0:0,0,14,13 1/1:0,60:60:99:1885,179,0:0,0,28,32 +chrX 4218252 . C T 2852 . AC=3;AF=1.00;AN=3;AS_AltDP=90;AS_QD=32.02;DP=96;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.02;SOR=0.883;VarDP=90 GT:AD:DP:GQ:PL:SB 1:0,35:35:99:1116,0:0,0,19,16 1/1:0,55:55:99:1766,165,0:0,0,30,25 +chrX 4218342 . A G 3875 . AC=3;AF=1.00;AN=3;AS_AltDP=90;AS_QD=30.94;DP=92;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.39;SOR=0.693;VarDP=90 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,36:36:99:.:.:1568,0:.:0,0,18,18 1|1:0,54:54:99:0|1:4218342_A_G:2337,163,0:4218342:0,0,27,27 +chrX 4218351 . C T 3827 . AC=3;AF=1.00;AN=3;AS_AltDP=88;AS_QD=27.40;DP=90;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.83;SOR=0.786;VarDP=88 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,35:35:99:.:.:1544,0:.:0,0,17,18 1|1:0,53:53:99:0|1:4218342_A_G:2313,160,0:4218342:0,0,25,28 +chrX 4218762 . TAAAA T 3586.97 . AC=3;AF=1.00;AN=3;AS_AltDP=84;AS_QD=32.82;DP=90;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.17;SOR=0.897;VarDP=84 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,28:28:99:.:.:1181,0:.:0,0,10,18 1|1:0,56:56:99:0|1:4218762_TAAAA_T:2445,169,0:4218762:0,0,28,28 +chrX 4218775 . A C 3664 . AC=3;AF=1.00;AN=3;AS_AltDP=86;AS_QD=33.16;DP=88;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=42.95;SOR=0.839;VarDP=86 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,28:28:99:.:.:1181,0:.:0,0,10,18 1|1:0,58:58:99:0|1:4218762_TAAAA_T:2513,175,0:4218762:0,0,30,28 +chrX 4218922 . T C 2550 . AC=3;AF=1.00;AN=3;AS_AltDP=81;AS_QD=31.85;DP=82;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.85;SOR=0.876;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:903,0:0,0,14,15 1/1:0,52:52:99:1677,156,0:0,0,30,22 +chrX 4219073 . G A 2543 . AC=3;AF=1.00;AN=3;AS_AltDP=75;AS_QD=34.31;DP=75;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=34.31;SOR=0.719;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:978,0:0,0,19,10 1/1:0,46:46:99:1595,138,0:0,0,19,27 +chrX 4219748 . A G 2497 . AC=3;AF=1.00;AN=3;AS_AltDP=75;AS_QD=33.69;DP=80;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.69;SOR=0.892;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:829,0:0,0,15,10 1/1:0,50:50:99:1698,150,0:0,0,19,31 +chrX 4219832 . C A 2497 . AC=3;AF=1.00;AN=3;AS_AltDP=75;AS_QD=33.69;DP=80;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.69;SOR=0.719;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:849,0:0,0,13,12 1/1:0,50:50:99:1678,150,0:0,0,24,26 +chrX 4219922 . G A 2624 . AC=3;AF=1.00;AN=3;AS_AltDP=81;AS_QD=32.77;DP=87;ExcessHet=0.0000;FS=0.000;MQ=59.85;QD=32.77;SOR=0.821;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:833,0:0,0,13,13 1/1:0,55:55:99:1821,165,0:0,0,25,30 +chrX 4220088 . G A 2644 . AC=3;AF=1.00;AN=3;AS_AltDP=80;AS_QD=33.43;DP=85;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.43;SOR=1.031;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:1116,0:0,0,17,16 1/1:0,47:47:99:1558,141,0:0,0,29,18 +chrX 4220160 . CATT C 3784.97 . AC=3;AF=1.00;AN=3;AS_AltDP=85;AS_QD=33.67;DP=95;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.99;SOR=0.716;VarDP=85 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:1350,0:0,0,15,15 1/1:0,55:55:99:2474,166,0:0,0,28,27 +chrX 4220453 . T C 819 . AC=2;AF=0.667;AN=3;AS_AltDP=30;AS_QD=23.58;BaseQRankSum=0;DP=65;ExcessHet=0.0000;FS=16.196;MQ=59.05;MQRankSum=-0.943;QD=23.58;ReadPosRankSum=-2.483;SOR=0.266;VarDP=36 GT:AD:DP:GQ:PL:SB 1:0,18:18:99:493,0:0,0,9,9 0/1:6,12:18:52:356,0,52:6,0,5,7 +chrX 4220670 . G A 2029 . AC=3;AF=1.00;AN=3;AS_AltDP=65;AS_QD=30.73;BaseQRankSum=3.158;DP=68;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=30.73;ReadPosRankSum=-1.335;SOR=0.925;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:838,0:0,0,17,10 1/1:2,38:40:71:1221,71,0:1,1,19,19 +chrX 4221548 . T C 1737 . AC=3;AF=1.00;AN=3;AS_AltDP=54;AS_QD=32.72;DP=57;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.72;SOR=0.931;VarDP=54 GT:AD:DP:GQ:PL:SB 1:0,20:20:99:625,0:0,0,9,11 1/1:0,34:34:99:1142,102,0:0,0,15,19 +chrX 4221847 . G A 2976 . AC=3;AF=1.00;AN=3;AS_AltDP=94;AS_QD=31.98;DP=98;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.98;SOR=0.976;VarDP=94 GT:AD:DP:GQ:PL:SB 1:0,35:35:99:1126,0:0,0,21,14 1/1:0,59:59:99:1880,176,0:0,0,32,27 +chrX 4222174 . C T 2989 . AC=3;AF=1.00;AN=3;AS_AltDP=73;AS_QD=28.75;DP=73;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=41.36;SOR=0.836;VarDP=73 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,23:23:99:.:.:933,0:.:0,0,10,13 1|1:0,50:50:99:0|1:4222174_C_T:2086,150,0:4222174:0,0,29,21 +chrX 4222199 . A C 2919 . AC=3;AF=1.00;AN=3;AS_AltDP=71;AS_QD=27.11;DP=75;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=41.54;SOR=0.904;VarDP=71 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,24:24:99:.:.:942,0:.:0,0,11,13 1|1:0,47:47:99:0|1:4222174_C_T:2007,141,0:4222174:0,0,28,19 +chrX 4222246 . CTTTA C 3740.97 . AC=3;AF=1.00;AN=3;AS_AltDP=84;AS_QD=32.26;DP=89;ExcessHet=0.0000;FS=0.000;MQ=59.93;QD=45.00;SOR=0.843;VarDP=84 GT:AD:DP:GQ:PL:SB 1:0,34:34:99:1530,0:0,0,13,21 1/1:0,50:50:99:2250,151,0:0,0,26,24 +chrX 4222443 . G A 2036 . AC=3;AF=1.00;AN=3;AS_AltDP=60;AS_QD=34.43;DP=61;ExcessHet=0.0000;FS=0.000;MQ=59.81;QD=34.43;SOR=0.831;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,21:21:99:710,0:0,0,9,12 1/1:0,39:39:99:1356,117,0:0,0,19,20 +chrX 4222909 . T C 2739 . AC=3;AF=1.00;AN=3;AS_AltDP=83;AS_QD=33.36;DP=85;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.36;SOR=0.818;VarDP=83 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:992,0:0,0,22,9 1/1:0,52:52:99:1777,156,0:0,0,17,35 +chrX 4222994 . A G 2618 . AC=3;AF=1.00;AN=3;AS_AltDP=86;AS_QD=30.79;DP=88;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.79;SOR=0.947;VarDP=86 GT:AD:DP:GQ:PL:SB 1:0,36:36:99:1121,0:0,0,20,16 1/1:0,50:50:99:1527,148,0:0,0,28,22 +chrX 4223419 . G T 2843 . AC=3;AF=1.00;AN=3;AS_AltDP=88;AS_QD=32.65;DP=88;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.65;SOR=0.693;VarDP=88 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:1022,0:0,0,13,19 1/1:0,56:56:99:1851,167,0:0,0,31,25 +chrX 4223749 . T C 2505 . AC=3;AF=1.00;AN=3;AS_AltDP=80;AS_QD=31.69;DP=83;ExcessHet=0.0000;FS=0.000;MQ=59.96;QD=31.69;SOR=1.236;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:928,0:0,0,9,20 1/1:0,51:51:99:1607,153,0:0,0,22,29 +chrX 4224194 . A G 2971 . AC=3;AF=1.00;AN=3;AS_AltDP=92;AS_QD=32.62;DP=95;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.62;SOR=0.929;VarDP=92 GT:AD:DP:GQ:PL:SB 1:0,34:34:99:1081,0:0,0,17,17 1/1:0,58:58:99:1920,174,0:0,0,34,24 +chrX 4224274 . T C 3204 . AC=3;AF=1.00;AN=3;AS_AltDP=99;AS_QD=32.67;DP=103;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.67;SOR=0.713;VarDP=99 GT:AD:DP:GQ:PL:SB 1:0,40:40:99:1275,0:0,0,18,22 1/1:0,59:59:99:1959,177,0:0,0,31,28 +chrX 4224545 . C T 3439 . AC=3;AF=1.00;AN=3;AS_AltDP=107;AS_QD=32.12;BaseQRankSum=2.294;DP=111;ExcessHet=0.0000;FS=3.259;MQ=60.00;MQRankSum=0;QD=32.12;ReadPosRankSum=-0.073;SOR=0.434;VarDP=108 GT:AD:DP:GQ:PL:SB 1:0,37:37:99:1216,0:0,0,19,18 1/1:1,70:71:99:2253,203,0:1,0,31,39 +chrX 4224900 . TG T 2643.97 . AC=3;AF=1.00;AN=3;AS_AltDP=64;AS_QD=31.81;BaseQRankSum=-0.495;DP=70;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=40.65;ReadPosRankSum=1.131;SOR=1.044;VarDP=66 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,23:24:99:.:.:957,0:.:1,0,13,10 1|1:1,41:42:81:0|1:4224900_TG_T:1726,81,0:4224900:0,1,14,27 +chrX 4224902 . TC T 2643.97 . AC=3;AF=1.00;AN=3;AS_AltDP=64;AS_QD=33.60;BaseQRankSum=-0.422;DP=68;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=40.65;ReadPosRankSum=0.905;SOR=1.044;VarDP=66 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,23:24:99:.:.:957,0:.:1,0,13,10 1|1:1,41:42:81:0|1:4224900_TG_T:1726,81,0:4224900:0,1,14,27 +chrX 4224911 . A G 2508 . AC=3;AF=1.00;AN=3;AS_AltDP=60;AS_QD=32.96;BaseQRankSum=-0.257;DP=64;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=40.94;ReadPosRankSum=0.289;SOR=0.986;VarDP=62 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,23:24:99:.:.:949,0:.:1,0,14,9 1|1:1,37:38:69:0|1:4224900_TG_T:1589,69,0:4224900:0,1,12,25 +chrX 4225570 . C T 2680 . AC=3;AF=1.00;AN=3;AS_AltDP=84;AS_QD=31.88;BaseQRankSum=-0.408;DP=86;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=31.88;ReadPosRankSum=1.23;SOR=0.364;VarDP=85 GT:AD:DP:GQ:PL:SB 1:1,30:31:99:948,0:1,0,18,12 1/1:0,54:54:99:1762,162,0:0,0,30,24 +chrX 4226316 . A AT 2133.97 . AC=3;AF=1.00;AN=3;AS_AltDP=77;AS_QD=27.86;BaseQRankSum=1.572;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=27.86;ReadPosRankSum=-1.631;SOR=0.333;VarDP=78 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:768,0:0,0,11,16 1/1:1,50:51:99:1405,127,0:0,1,23,27 +chrX 4226624 . T TA,TTA 2631.97 . AC=1,2;AF=0.333,0.667;AN=3;AS_AltDP=22,48;AS_QD=30.58,32.32;DP=84;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=38.16;SOR=0.941;VarDP=70 GT:AD:DP:GQ:PL:SB 2:0,0,24:24:99:890,702,0:0,0,11,13 1/2:0,22,24:46:99:1781,683,571,621,0,477:0,0,28,18 +chrX 4226870 . T A 587 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=14.02;BaseQRankSum=-1.075;DP=72;ExcessHet=0.0000;FS=2.498;MQ=59.49;MQRankSum=1.092;QD=14.02;ReadPosRankSum=-0.917;SOR=0.568;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:27:99:27:0,619 0/1:21,23:44:99:.:617,0,576:12,9,11,12 +chrX 4226912 . C G 2139 . AC=3;AF=1.00;AN=3;AS_AltDP=67;AS_QD=32.37;DP=71;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.37;SOR=0.723;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,21:21:99:685,0:0,0,11,10 1/1:0,46:46:99:1484,138,0:0,0,23,23 +chrX 4227108 . GTATACATATATATA G 301.97 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=10.66;BaseQRankSum=-0.56;DP=51;ExcessHet=0.0000;FS=1.428;MQ=56.25;MQRankSum=-0.665;QD=10.66;ReadPosRankSum=-1.115;SOR=1.201;VarDP=32 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:16:45:16:.:.:0,45 0|1:15,17:32:99:.:0|1:4227108_GTATACATATATATA_G:341,0,367:4227108:7,8,6,11 +chrX 4227124 . ATG A 622.97 . AC=2;AF=0.667;AN=3;AS_AltDP=21;AS_QD=16.97;BaseQRankSum=1.879;DP=45;ExcessHet=0.0000;FS=1.261;MQ=55.17;MQRankSum=0.464;QD=16.97;ReadPosRankSum=1.383;SOR=0.425;VarDP=39 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,8:8:99:.:.:360,0:.:0,0,3,5 0|1:18,13:31:99:1|0:4227108_GTATACATATATATA_G:302,0,378:4227108:7,11,7,6 +chrX 4227126 . GTATA *,G 1245.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=13,18;AS_QD=0.00,30.36;DP=45;ExcessHet=0.0000;FS=0.000;MQ=56.02;QD=41.45;SOR=0.968;VarDP=31 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,8,0:8:99:.:.:360,0,360:.:0,0,3,5 1|2:0,13,18:31:99:0|1:4227108_GTATACATATATATA_G:1285,460,376,394,0,333:4227108:0,0,14,17 +chrX 4227129 . TACATATATATATATATATATGTATACATATATATATATGTATAC T,* 1575.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=21,17;AS_QD=28.74,0.00;DP=44;ExcessHet=0.0000;FS=0.000;MQ=54.44;QD=42.50;SOR=0.914;VarDP=38 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,8,0:8:99:.:.:360,0,360:.:0,0,3,5 1|2:0,13,17:30:99:1|0:4227108_GTATACATATATATA_G:1255,431,348,393,0,304:4227108:0,0,14,16 +chrX 4227145 . TATATGTATACATATATATATATGTATAC *,T 1142.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=13,14;AS_QD=0.00,30.49;DP=41;ExcessHet=0.0000;FS=0.000;MQ=54.51;QD=43.78;SOR=0.869;VarDP=27 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,8,0:8:99:.:.:360,0,360:.:0,0,3,5 1|2:0,13,14:27:99:0|1:4227108_GTATACATATATATA_G:1182,359,277,393,0,313:4227108:0,0,13,14 +chrX 4227312 . G A 1335 . AC=3;AF=1.00;AN=3;AS_AltDP=41;AS_QD=33.29;DP=44;ExcessHet=0.0000;FS=0.000;MQ=59.62;QD=33.29;SOR=0.954;VarDP=41 GT:AD:DP:GQ:PL:SB 1:0,13:13:99:442,0:0,0,8,5 1/1:0,28:28:84:923,84,0:0,0,15,13 +chrX 4227651 . A G 2513 . AC=3;AF=1.00;AN=3;AS_AltDP=81;AS_QD=31.40;DP=88;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.40;SOR=0.718;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:913,0:0,0,13,16 1/1:0,52:52:99:1630,155,0:0,0,28,24 +chrX 4227763 . TCCCTTCTC T 1644.97 . AC=3;AF=1.00;AN=3;AS_AltDP=38;AS_QD=30.50;DP=72;ExcessHet=0.0000;FS=0.000;MQ=58.77;QD=44.32;SOR=1.040;VarDP=38 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,16:16:99:.:.:722,0:.:0,0,9,7 1|1:0,22:22:71:0|1:4227763_TCCCTTCTC_T:962,71,0:4227763:0,0,7,15 +chrX 4227804 . CTTTTCT C 2009.97 . AC=3;AF=1.00;AN=3;AS_AltDP=47;AS_QD=28.81;DP=72;ExcessHet=0.0000;FS=0.000;MQ=57.81;QD=43.60;SOR=1.659;VarDP=47 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,18:18:99:.:.:810,0:.:0,0,8,10 1|1:0,29:29:91:0|1:4227763_TCCCTTCTC_T:1239,91,0:4227763:0,0,7,22 +chrX 4227856 . TTCTTTCTTTCTTTCTCTCTTTTTC T 364.97 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=13.93;BaseQRankSum=1.692;DP=64;ExcessHet=0.0000;FS=1.697;MQ=57.51;MQRankSum=-0.371;QD=13.93;ReadPosRankSum=-0.54;SOR=1.112;VarDP=29 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:17:99:17:0,270 0/1:18,11:29:99:.:404,0,721:5,13,2,9 +chrX 4227860 . TTCTTTCTTTCTCTCTTTTTC T,* 758.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=18,0;AS_QD=29.71,34.88;DP=69;ExcessHet=0.0000;FS=0.000;MQ=56.63;QD=44.33;SOR=0.593;VarDP=18 GT:AD:DP:GQ:PL:SB 1:0,18,0:18:99:798,0,798:0,0,7,11 0/2:18,0,11:29:99:404,459,1214,0,756,721:5,13,2,9 +chrX 4227864 . TTCTTTCTCTCTTTTTC *,T 1109.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=11,18;AS_QD=0.00,31.13;DP=65;ExcessHet=0.0000;FS=0.000;MQ=57.27;QD=39.62;SOR=1.814;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,18,0:18:99:798,0,798:0,0,7,11 1/2:0,11,18:29:99:1149,697,722,460,0,404:0,0,7,22 +chrX 4228070 . T C 2095 . AC=3;AF=1.00;AN=3;AS_AltDP=66;AS_QD=32.20;DP=70;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.20;SOR=1.033;VarDP=66 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:916,0:0,0,14,14 1/1:0,38:38:99:1209,113,0:0,0,24,14 +chrX 4228497 . G A 2819 . AC=3;AF=1.00;AN=3;AS_AltDP=86;AS_QD=33.13;DP=86;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.13;SOR=0.693;VarDP=86 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:1087,0:0,0,17,16 1/1:0,53:53:99:1762,159,0:0,0,26,27 +chrX 4228524 . T C 2758 . AC=3;AF=1.00;AN=3;AS_AltDP=85;AS_QD=32.80;DP=89;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.80;SOR=0.765;VarDP=85 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:1032,0:0,0,18,14 1/1:0,53:53:99:1756,159,0:0,0,26,27 +chrX 4229270 . A G 1527 . AC=3;AF=1.00;AN=3;AS_AltDP=50;AS_QD=30.53;BaseQRankSum=-0.675;DP=53;ExcessHet=0.0000;FS=3.274;MQ=60.00;MQRankSum=0;QD=30.53;ReadPosRankSum=-0.328;SOR=0.477;VarDP=51 GT:AD:DP:GQ:PL:SB 1:0,14:14:99:486,0:0,0,8,6 1/1:1,36:37:76:1071,76,0:1,0,15,21 +chrX 4229305 . C T 1682 . AC=3;AF=1.00;AN=3;AS_AltDP=52;AS_QD=32.30;BaseQRankSum=-0.311;DP=54;ExcessHet=0.0000;FS=3.263;MQ=60.00;MQRankSum=0;QD=32.30;ReadPosRankSum=-1.551;SOR=0.467;VarDP=53 GT:AD:DP:GQ:PL:SB 1:0,15:15:99:511,0:0,0,8,7 1/1:1,37:38:80:1201,80,0:1,0,16,21 +chrX 4229338 . C T 1692 . AC=3;AF=1.00;AN=3;AS_AltDP=52;AS_QD=32.49;BaseQRankSum=-0.321;DP=55;ExcessHet=0.0000;FS=3.093;MQ=60.00;MQRankSum=0;QD=32.49;ReadPosRankSum=-0.386;SOR=0.343;VarDP=53 GT:AD:DP:GQ:PL:SB 1:0,17:17:99:590,0:0,0,11,6 1/1:1,35:36:73:1132,73,0:1,0,14,21 +chrX 4230131 . T G 2545 . AC=3;AF=1.00;AN=3;AS_AltDP=81;AS_QD=31.79;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.79;SOR=0.821;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:818,0:0,0,14,13 1/1:0,54:54:99:1757,162,0:0,0,24,30 +chrX 4230391 . T C 3397 . AC=3;AF=1.00;AN=3;AS_AltDP=77;AS_QD=22.81;DP=80;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.51;SOR=0.887;VarDP=77 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,29:29:99:.:.:1268,0:.:0,0,16,13 1|1:0,48:48:99:0|1:4230391_T_C:2159,144,0:4230391:0,0,26,22 +chrX 4230392 . G C 3397 . AC=3;AF=1.00;AN=3;AS_AltDP=77;AS_QD=30.74;DP=81;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.51;SOR=0.887;VarDP=77 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,29:29:99:.:.:1268,0:.:0,0,16,13 1|1:0,48:48:99:0|1:4230391_T_C:2159,144,0:4230391:0,0,26,22 +chrX 4231322 . G A 2930 . AC=3;AF=1.00;AN=3;AS_AltDP=90;AS_QD=32.89;DP=93;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.89;SOR=0.935;VarDP=90 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:1014,0:0,0,18,14 1/1:0,58:58:99:1946,174,0:0,0,32,26 +chrX 4231337 . C A 2771 . AC=3;AF=1.00;AN=3;AS_AltDP=87;AS_QD=32.20;DP=90;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.20;SOR=0.917;VarDP=87 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:972,0:0,0,16,15 1/1:0,56:56:99:1829,168,0:0,0,32,24 +chrX 4231530 . A G 2638 . AC=3;AF=1.00;AN=3;AS_AltDP=84;AS_QD=31.76;DP=89;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.76;SOR=0.741;VarDP=84 GT:AD:DP:GQ:PL:SB 1:0,35:35:99:1091,0:0,0,20,15 1/1:0,49:49:99:1577,147,0:0,0,23,26 +chrX 4231680 . TA T 2929.97 . AC=3;AF=1.00;AN=3;AS_AltDP=80;AS_QD=32.18;DP=84;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=37.11;SOR=0.743;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:973,0:0,0,13,13 1/1:0,54:54:99:1996,162,0:0,0,26,28 +chrX 4232527 . A G 2783 . AC=3;AF=1.00;AN=3;AS_AltDP=87;AS_QD=32.33;DP=87;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.33;SOR=1.218;VarDP=87 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:933,0:0,0,14,14 1/1:0,59:59:99:1880,176,0:0,0,39,20 +chrX 4232649 . C T 2709 . AC=3;AF=1.00;AN=3;AS_AltDP=86;AS_QD=31.13;BaseQRankSum=2.388;DP=94;ExcessHet=0.0000;FS=0.000;MQ=59.95;MQRankSum=0;QD=31.13;ReadPosRankSum=0.837;SOR=1.065;VarDP=88 GT:AD:DP:GQ:PL:SB 1:1,29:30:99:903,0:1,0,11,18 1/1:1,57:58:99:1836,164,0:0,1,25,32 +chrX 4232682 . G A 2942 . AC=3;AF=1.00;AN=3;AS_AltDP=91;AS_QD=32.30;BaseQRankSum=-0.493;DP=96;ExcessHet=0.0000;FS=3.617;MQ=59.95;MQRankSum=0;QD=32.30;ReadPosRankSum=-1.313;SOR=0.696;VarDP=92 GT:AD:DP:GQ:PL:SB 1:1,32:33:99:981,0:1,0,12,20 1/1:0,59:59:99:1991,177,0:0,0,27,32 +chrX 4232746 . G A 2981 . AC=3;AF=1.00;AN=3;AS_AltDP=94;AS_QD=31.69;BaseQRankSum=-0.385;DP=97;ExcessHet=0.0000;FS=3.343;MQ=59.95;MQRankSum=0;QD=31.69;ReadPosRankSum=1.326;SOR=0.499;VarDP=95 GT:AD:DP:GQ:PL:SB 1:1,33:34:99:1037,0:1,0,18,15 1/1:0,61:61:99:1974,183,0:0,0,25,36 +chrX 4232853 . A T 2913 . AC=3;AF=1.00;AN=3;AS_AltDP=88;AS_QD=33.44;DP=91;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.44;SOR=0.786;VarDP=88 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:987,0:0,0,19,10 1/1:0,59:59:99:1956,177,0:0,0,27,32 +chrX 4232869 . A G 2547 . AC=3;AF=1.00;AN=3;AS_AltDP=80;AS_QD=31.81;BaseQRankSum=-0.147;DP=84;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=31.81;ReadPosRankSum=1.734;SOR=0.289;VarDP=81 GT:AD:DP:GQ:PL:SB 1:1,24:25:99:781,0:1,0,16,8 1/1:0,56:56:99:1796,167,0:0,0,27,29 +chrX 4233009 . G A 2318 . AC=3;AF=1.00;AN=3;AS_AltDP=74;AS_QD=30.89;BaseQRankSum=0.505;DP=79;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=30.89;ReadPosRankSum=0.038;SOR=0.747;VarDP=76 GT:AD:DP:GQ:PL:SB 1:2,31:33:99:903,0:1,1,19,12 1/1:0,43:43:99:1445,129,0:0,0,19,24 +chrX 4233045 . T G 2063 . AC=3;AF=1.00;AN=3;AS_AltDP=68;AS_QD=30.33;BaseQRankSum=-0.592;DP=69;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=30.33;ReadPosRankSum=-0.538;SOR=0.273;VarDP=69 GT:AD:DP:GQ:PL:SB 1:1,28:29:99:833,0:0,1,15,13 1/1:0,40:40:99:1260,118,0:0,0,17,23 +chrX 4233264 . G C 2238 . AC=3;AF=1.00;AN=3;AS_AltDP=70;AS_QD=31.94;BaseQRankSum=-0.326;DP=73;ExcessHet=0.0000;FS=3.889;MQ=60.00;MQRankSum=0;QD=31.94;ReadPosRankSum=-1.388;SOR=0.896;VarDP=71 GT:AD:DP:GQ:PL:SB 1:1,24:25:99:729,0:0,1,12,12 1/1:0,46:46:99:1539,138,0:0,0,30,16 +chrX 4233862 . A T 2675 . AC=3;AF=1.00;AN=3;AS_AltDP=81;AS_QD=33.40;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.40;SOR=1.058;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:874,0:0,0,12,14 1/1:0,55:55:99:1831,165,0:0,0,22,33 +chrX 4235001 . A G 2139 . AC=3;AF=1.00;AN=3;AS_AltDP=65;AS_QD=33.37;DP=68;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.37;SOR=0.787;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,21:21:99:700,0:0,0,12,9 1/1:0,44:44:99:1469,132,0:0,0,22,22 +chrX 4235138 . ATT A 2141.97 . AC=3;AF=1.00;AN=3;AS_AltDP=58;AS_QD=28.52;DP=61;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=37.60;SOR=1.085;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,22:22:99:830,0:0,0,9,13 1/1:0,36:36:99:1351,108,0:0,0,15,21 +chrX 4235288 . C T 2765 . AC=3;AF=1.00;AN=3;AS_AltDP=85;AS_QD=32.50;BaseQRankSum=2.674;DP=91;ExcessHet=0.0000;FS=3.904;MQ=60.00;MQRankSum=0;QD=32.50;ReadPosRankSum=0.955;SOR=0.899;VarDP=86 GT:AD:DP:GQ:PL:SB 1:0,37:37:99:1216,0:0,0,22,15 1/1:1,48:49:99:1579,122,0:0,1,29,19 +chrX 4235500 . TTA T 2591.97 . AC=3;AF=1.00;AN=3;AS_AltDP=61;AS_QD=32.25;BaseQRankSum=-0.112;DP=69;ExcessHet=0.0000;FS=0.000;MQ=57.54;MQRankSum=-0.381;QD=42.44;ReadPosRankSum=-0.083;SOR=0.295;VarDP=62 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,20:20:99:.:.:892,0:.:0,0,12,8 1|1:1,41:42:83:0|1:4235500_TTA_T:1739,83,0:4235500:1,0,21,20 +chrX 4235518 . GCGAATACCATTATTTTGTTCCTTCTTATGACTGAGTAGTATTCCATTATATATATATA G 2865.97 . AC=3;AF=1.00;AN=3;AS_AltDP=68;AS_QD=34.12;BaseQRankSum=-0.326;DP=70;ExcessHet=0.0000;FS=0.000;MQ=57.51;MQRankSum=-0.612;QD=41.50;ReadPosRankSum=0.616;SOR=0.814;VarDP=70 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,24:24:99:.:.:1069,0:.:0,0,13,11 1|1:2,44:46:48:0|1:4235500_TTA_T:1836,48,0:4235500:1,1,23,21 +chrX 4235614 . A ATG 2568.97 . AC=3;AF=1.00;AN=3;AS_AltDP=61;AS_QD=26.89;BaseQRankSum=-0.4;DP=62;ExcessHet=0.0000;FS=0.000;MQ=57.18;MQRankSum=-0.441;QD=42.06;ReadPosRankSum=-0.578;SOR=0.330;VarDP=62 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,23:23:99:.:.:984,0:.:0,0,11,12 1|1:1,38:39:72:0|1:4235500_TTA_T:1624,72,0:4235500:0,1,16,22 +chrX 4237473 . G A 2719 . AC=3;AF=1.00;AN=3;AS_AltDP=82;AS_QD=33.52;DP=84;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.52;SOR=0.742;VarDP=82 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:749,0:0,0,11,12 1/1:0,59:59:99:2000,177,0:0,0,29,30 +chrX 4237545 . C T 3220 . AC=3;AF=1.00;AN=3;AS_AltDP=99;AS_QD=32.83;DP=100;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.83;SOR=1.145;VarDP=99 GT:AD:DP:GQ:PL:SB 1:0,34:34:99:1162,0:0,0,13,21 1/1:0,65:65:99:2088,195,0:0,0,27,38 +chrX 4237749 . G A 2825 . AC=3;AF=1.00;AN=3;AS_AltDP=88;AS_QD=32.44;DP=90;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.44;SOR=0.786;VarDP=88 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:814,0:0,0,11,15 1/1:0,62:62:99:2041,186,0:0,0,35,27 +chrX 4238018 . T C 2661 . AC=3;AF=1.00;AN=3;AS_AltDP=82;AS_QD=32.82;DP=82;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.82;SOR=0.902;VarDP=82 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:774,0:0,0,14,10 1/1:0,58:58:99:1917,174,0:0,0,31,27 +chrX 4238354 . C G 2646 . AC=3;AF=1.00;AN=3;AS_AltDP=85;AS_QD=31.48;DP=86;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.48;SOR=1.101;VarDP=85 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:967,0:0,0,19,13 1/1:0,53:53:99:1709,158,0:0,0,31,22 +chrX 4238393 . G T 3259 . AC=3;AF=1.00;AN=3;AS_AltDP=100;AS_QD=32.89;DP=106;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.89;SOR=1.167;VarDP=100 GT:AD:DP:GQ:PL:SB 1:0,36:36:99:1175,0:0,0,22,14 1/1:0,64:64:99:2114,192,0:0,0,38,26 +chrX 4238658 . T C 3553 . AC=3;AF=1.00;AN=3;AS_AltDP=81;AS_QD=30.80;DP=85;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.23;SOR=0.768;VarDP=81 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,33:33:99:.:.:1475,0:.:0,0,18,15 1|1:0,48:48:99:0|1:4238658_T_C:2108,144,0:4238658:0,0,24,24 +chrX 4238668 . T C 3598 . AC=3;AF=1.00;AN=3;AS_AltDP=82;AS_QD=32.71;DP=84;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.24;SOR=0.742;VarDP=82 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,35:35:99:.:.:1544,0:.:0,0,19,16 1|1:0,47:47:99:0|1:4238658_T_C:2084,141,0:4238658:0,0,23,24 +chrX 4239142 . CAA C 2249.97 . AC=3;AF=1.00;AN=3;AS_AltDP=63;AS_QD=33.55;DP=77;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=36.33;SOR=1.010;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:835,0:0,0,9,14 1/1:0,40:40:99:1454,121,0:0,0,18,22 +chrX 4239915 . G GAA 3611.97 . AC=3;AF=1.00;AN=3;AS_AltDP=82;AS_QD=30.59;DP=87;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.52;SOR=0.846;VarDP=82 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:1323,0:0,0,15,15 1/1:0,52:52:99:2328,156,0:0,0,29,23 +chrX 4240406 . G A 2635 . AC=3;AF=1.00;AN=3;AS_AltDP=82;AS_QD=32.11;BaseQRankSum=2.287;DP=84;ExcessHet=0.0000;FS=3.063;MQ=60.00;MQRankSum=0;QD=32.11;ReadPosRankSum=-1.118;SOR=0.300;VarDP=83 GT:AD:DP:GQ:PL:SB 1:0,21:21:99:710,0:0,0,11,10 1/1:1,61:62:99:1955,176,0:0,1,31,30 +chrX 4240512 . C T 2181 . AC=3;AF=1.00;AN=3;AS_AltDP=71;AS_QD=31.14;DP=74;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.14;SOR=0.721;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:764,0:0,0,13,10 1/1:0,48:48:99:1447,142,0:0,0,23,25 +chrX 4240943 . C T 3412 . AC=3;AF=1.00;AN=3;AS_AltDP=79;AS_QD=34.76;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.57;SOR=0.718;VarDP=79 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,26:26:99:.:.:1159,0:.:0,0,13,13 1|1:0,53:53:99:0|1:4240943_C_T:2283,159,0:4240943:0,0,27,26 +chrX 4240944 . T G 3412 . AC=3;AF=1.00;AN=3;AS_AltDP=79;AS_QD=32.38;DP=84;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.57;SOR=0.718;VarDP=79 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,26:26:99:.:.:1159,0:.:0,0,13,13 1|1:0,53:53:99:0|1:4240943_C_T:2283,159,0:4240943:0,0,27,26 +chrX 4240983 . C T 1998 . AC=3;AF=1.00;AN=3;AS_AltDP=65;AS_QD=31.20;DP=69;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.20;SOR=1.000;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:754,0:0,0,12,12 1/1:0,41:41:99:1274,121,0:0,0,25,16 +chrX 4241056 . G C 2043 . AC=3;AF=1.00;AN=3;AS_AltDP=65;AS_QD=31.41;BaseQRankSum=-0.479;DP=69;ExcessHet=0.0000;FS=3.424;MQ=60.00;MQRankSum=0;QD=31.41;ReadPosRankSum=0.039;SOR=0.572;VarDP=66 GT:AD:DP:GQ:PL:SB 1:0,21:21:99:709,0:0,0,10,11 1/1:1,44:45:99:1364,100,0:0,1,26,18 +chrX 4241112 . C G 2241 . AC=3;AF=1.00;AN=3;AS_AltDP=72;AS_QD=31.11;BaseQRankSum=-0.269;DP=74;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=31.11;ReadPosRankSum=-0.814;SOR=0.297;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:718,0:0,0,13,11 1/1:1,48:49:99:1553,112,0:0,1,20,28 +chrX 4241288 . C T 3096 . AC=3;AF=1.00;AN=3;AS_AltDP=95;AS_QD=32.91;DP=99;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.91;SOR=0.802;VarDP=95 GT:AD:DP:GQ:PL:SB 1:0,34:34:99:1121,0:0,0,17,17 1/1:0,61:61:99:2005,183,0:0,0,33,28 +chrX 4241762 . T A 2625 . AC=3;AF=1.00;AN=3;AS_AltDP=80;AS_QD=33.19;DP=96;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.19;SOR=1.310;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:933,0:0,0,9,20 1/1:0,51:51:99:1722,153,0:0,0,21,30 +chrX 4241810 . T C 2547 . AC=3;AF=1.00;AN=3;AS_AltDP=80;AS_QD=32.21;DP=98;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.21;SOR=1.730;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,20:20:99:659,0:0,0,6,14 1/1:0,60:60:99:1918,180,0:0,0,19,41 +chrX 4242037 . CA C 623.97 . AC=3;AF=1.00;AN=3;AS_AltDP=23;AS_QD=28.83;DP=56;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=28.83;SOR=1.426;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,6:6:99:173,0:0,0,2,4 1/1:0,17:17:51:490,51,0:0,0,13,4 +chrX 4242075 . A G 1246 . AC=3;AF=1.00;AN=3;AS_AltDP=39;AS_QD=32.72;DP=71;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.72;SOR=1.730;VarDP=39 GT:AD:DP:GQ:PL:SB 1:0,10:10:99:318,0:0,0,6,4 1/1:0,29:29:87:958,87,0:0,0,21,8 +chrX 4242161 . G A 3115 . AC=3;AF=1.00;AN=3;AS_AltDP=72;AS_QD=27.14;DP=91;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.68;SOR=1.675;VarDP=72 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,20:20:99:.:.:889,0:.:0,0,14,6 1|1:0,52:52:99:0|1:4242161_G_A:2256,156,0:4242161:0,0,35,17 +chrX 4242170 . A G 3013 . AC=3;AF=1.00;AN=3;AS_AltDP=69;AS_QD=26.39;DP=88;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.10;SOR=1.576;VarDP=69 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,20:20:99:.:.:879,0:.:0,0,14,6 1|1:0,49:49:99:0|1:4242161_G_A:2164,147,0:4242161:0,0,32,17 +chrX 4242452 . C CTA 3258.97 . AC=3;AF=1.00;AN=3;AS_AltDP=74;AS_QD=30.43;DP=82;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.57;SOR=1.209;VarDP=74 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,19:19:99:.:.:834,0:.:0,0,6,13 1|1:0,55:55:99:0|1:4242452_C_CTA:2464,165,0:4242452:0,0,23,32 +chrX 4242454 . C CTA 3294.97 . AC=3;AF=1.00;AN=3;AS_AltDP=75;AS_QD=31.54;DP=78;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.45;SOR=1.240;VarDP=75 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,20:20:99:.:.:869,0:.:0,0,6,14 1|1:0,55:55:99:0|1:4242452_C_CTA:2465,166,0:4242452:0,0,23,32 +chrX 4242789 . T G 2491 . AC=3;AF=1.00;AN=3;AS_AltDP=78;AS_QD=32.32;DP=85;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.32;SOR=0.914;VarDP=78 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:803,0:0,0,10,16 1/1:0,52:52:99:1718,156,0:0,0,25,27 +chrX 4243194 . GA G 2904.97 . AC=3;AF=1.00;AN=3;AS_AltDP=91;AS_QD=32.35;DP=94;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.35;SOR=0.959;VarDP=91 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:867,0:0,0,11,16 1/1:0,64:64:99:2077,193,0:0,0,40,24 +chrX 4243812 . G A 2584 . AC=3;AF=1.00;AN=3;AS_AltDP=79;AS_QD=32.68;BaseQRankSum=2.117;DP=81;ExcessHet=0.0000;FS=3.120;MQ=60.00;MQRankSum=0;QD=32.68;ReadPosRankSum=0.284;SOR=0.343;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:869,0:0,0,15,10 1/1:1,54:55:99:1745,140,0:1,0,23,31 +chrX 4243834 . G A 2436 . AC=3;AF=1.00;AN=3;AS_AltDP=76;AS_QD=31.62;BaseQRankSum=-0.472;DP=80;ExcessHet=0.0000;FS=2.963;MQ=60.00;MQRankSum=0;QD=31.62;ReadPosRankSum=1.547;SOR=0.171;VarDP=78 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:874,0:0,0,17,9 1/1:2,50:52:86:1592,86,0:2,0,26,24 +chrX 4244122 . C T 2903 . AC=3;AF=1.00;AN=3;AS_AltDP=85;AS_QD=34.51;DP=85;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=34.51;SOR=0.867;VarDP=85 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:884,0:0,0,11,15 1/1:0,59:59:99:2049,177,0:0,0,35,24 +chrX 4244278 . A G 2594 . AC=3;AF=1.00;AN=3;AS_AltDP=81;AS_QD=31.61;BaseQRankSum=2.919;DP=85;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=31.61;ReadPosRankSum=-1.236;SOR=0.768;VarDP=83 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:834,0:0,0,14,10 1/1:2,57:59:99:1790,126,0:1,1,28,29 +chrX 4244895 . A G 2639 . AC=3;AF=1.00;AN=3;AS_AltDP=80;AS_QD=33.36;DP=82;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.36;SOR=0.796;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:978,0:0,0,17,12 1/1:0,51:51:99:1691,153,0:0,0,25,26 +chrX 4245097 . T C 2355 . AC=3;AF=1.00;AN=3;AS_AltDP=76;AS_QD=31.38;DP=79;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.38;SOR=0.746;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:909,0:0,0,11,16 1/1:0,49:49:99:1476,146,0:0,0,28,21 +chrX 4245343 . C T 3112 . AC=3;AF=1.00;AN=3;AS_AltDP=72;AS_QD=27.02;DP=72;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.64;SOR=1.002;VarDP=72 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,27:27:99:.:.:1194,0:.:0,0,9,18 1|1:0,45:45:99:0|1:4245343_C_T:1948,135,0:4245343:0,0,22,23 +chrX 4245352 . A G 3114 . AC=3;AF=1.00;AN=3;AS_AltDP=72;AS_QD=30.60;DP=73;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.67;SOR=1.002;VarDP=72 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,27:27:99:.:.:1195,0:.:0,0,9,18 1|1:0,45:45:99:0|1:4245343_C_T:1949,135,0:4245343:0,0,22,23 +chrX 4245490 . G A 2434 . AC=3;AF=1.00;AN=3;AS_AltDP=75;AS_QD=32.85;DP=79;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.85;SOR=0.774;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:862,0:0,0,13,14 1/1:0,48:48:99:1602,144,0:0,0,23,25 +chrX 4246022 . C T 2201 . AC=3;AF=1.00;AN=3;AS_AltDP=66;AS_QD=33.80;DP=66;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.80;SOR=1.112;VarDP=66 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:791,0:0,0,14,10 1/1:0,42:42:99:1440,126,0:0,0,25,17 +chrX 4246189 . T C 2599 . AC=3;AF=1.00;AN=3;AS_AltDP=81;AS_QD=32.46;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.46;SOR=0.718;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:789,0:0,0,11,13 1/1:0,57:57:99:1840,170,0:0,0,29,28 +chrX 4246582 . A G,T 2195 . AC=3,0;AF=1.00,0.00;AN=3;AS_AltDP=49,3;AS_QD=29.63,28.93;DP=53;ExcessHet=0.0000;FS=0.000;MQ=58.24;QD=42.79;SOR=0.853;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:945,0,945:0,0,11,10 1/1:0,28,3:31:8:1280,93,0,803,8,721:0,0,17,14 +chrX 4246585 . G T 2459 . AC=3;AF=1.00;AN=3;AS_AltDP=56;AS_QD=31.30;DP=56;ExcessHet=0.0000;FS=0.000;MQ=57.17;QD=44.45;SOR=1.009;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,22:22:99:.:.:990,0:.:0,0,12,10 1|1:0,34:34:99:0|1:4246585_G_T:1499,102,0:4246585:0,0,20,14 +chrX 4246590 . C CTTTTTT,CTTTTTTTT,CTTTTTTTTT 2467.97 . AC=3,0,0;AF=1.00,0.00,0.00;AN=3;AS_AltDP=43,1,1;AS_QD=27.77,31.03,34.32;DP=58;ExcessHet=0.0000;FS=0.000;MQ=57.10;QD=55.71;SOR=0.829;VarDP=45 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,10,1,1:12:99:.:.:1022,0,199,270:.:0,0,2,10 1|1:0,33,0,0:33:99:0|1:4246585_G_T:1485,99,0,1485,99,1485,1485,99,1485,1485:4246585:0,0,19,14 +chrX 4246780 . A G 2066 . AC=3;AF=1.00;AN=3;AS_AltDP=63;AS_QD=33.27;DP=66;ExcessHet=0.0000;FS=0.000;MQ=58.87;QD=33.27;SOR=0.790;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,20:20:99:654,0:0,0,10,10 1/1:0,43:43:99:1442,129,0:0,0,20,23 +chrX 4246985 . A G 2613 . AC=3;AF=1.00;AN=3;AS_AltDP=84;AS_QD=31.09;BaseQRankSum=-0.661;DP=90;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=31.09;ReadPosRankSum=0.418;SOR=0.242;VarDP=85 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:888,0:0,0,14,13 1/1:1,57:58:99:1755,139,0:0,1,27,30 +chrX 4248361 . T C 2019 . AC=3;AF=1.00;AN=3;AS_AltDP=64;AS_QD=32.02;DP=65;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.02;SOR=0.892;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:779,0:0,0,12,12 1/1:0,40:40:99:1270,120,0:0,0,17,23 +chrX 4249244 . A G 2519 . AC=3;AF=1.00;AN=3;AS_AltDP=78;AS_QD=31.86;BaseQRankSum=3.052;DP=81;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=31.86;ReadPosRankSum=-0.672;SOR=0.914;VarDP=80 GT:AD:DP:GQ:PL:SB 1:1,30:31:99:982,0:1,0,12,18 1/1:1,48:49:99:1567,137,0:0,1,23,25 +chrX 4249418 . G A 2983 . AC=3;AF=1.00;AN=3;AS_AltDP=90;AS_QD=33.48;DP=91;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.48;SOR=0.883;VarDP=90 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:923,0:0,0,13,15 1/1:0,62:62:99:2090,186,0:0,0,28,34 +chrX 4250385 . C CTTA 3414.97 . AC=3;AF=1.00;AN=3;AS_AltDP=79;AS_QD=35.01;BaseQRankSum=-0.776;DP=85;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=43.18;ReadPosRankSum=-1.106;SOR=0.255;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:1450,0:0,0,15,18 1/1:1,46:47:96:2004,96,0:0,1,23,23 +chrX 4250489 . A C 538 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=10.14;BaseQRankSum=-0.226;DP=92;ExcessHet=0.0000;FS=3.775;MQ=60.00;MQRankSum=0;QD=10.14;ReadPosRankSum=-0.486;SOR=0.459;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:33:99:33:0,701 0/1:31,25:56:99:.:568,0,751:19,12,12,13 +chrX 4250581 . A C 2292 . AC=3;AF=1.00;AN=3;AS_AltDP=73;AS_QD=31.81;DP=75;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.81;SOR=0.836;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:1072,0:0,0,22,11 1/1:0,40:40:99:1250,118,0:0,0,17,23 +chrX 4252042 . A G 2631 . AC=3;AF=1.00;AN=3;AS_AltDP=84;AS_QD=31.68;DP=87;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.68;SOR=0.693;VarDP=84 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:931,0:0,0,16,14 1/1:0,54:54:99:1730,161,0:0,0,26,28 +chrX 4252415 . T C 2649 . AC=3;AF=1.00;AN=3;AS_AltDP=85;AS_QD=30.79;BaseQRankSum=2.537;DP=91;ExcessHet=0.0000;FS=7.260;MQ=60.00;MQRankSum=0;QD=30.79;ReadPosRankSum=1.143;SOR=0.661;VarDP=87 GT:AD:DP:GQ:PL:SB 1:1,39:40:99:1190,0:0,1,20,19 1/1:1,46:47:99:1489,130,0:0,1,29,17 +chrX 4252856 . A G 2698 . AC=3;AF=1.00;AN=3;AS_AltDP=88;AS_QD=30.65;BaseQRankSum=-0.51;DP=91;ExcessHet=0.0000;FS=3.583;MQ=59.87;MQRankSum=0;QD=30.65;ReadPosRankSum=-1.444;SOR=0.673;VarDP=89 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:883,0:0,0,16,13 1/1:1,59:60:99:1845,145,0:0,1,34,25 +chrX 4253137 . A C 3131 . AC=3;AF=1.00;AN=3;AS_AltDP=96;AS_QD=32.93;DP=97;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.93;SOR=0.778;VarDP=96 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:1072,0:0,0,15,17 1/1:0,64:64:99:2089,191,0:0,0,35,29 +chrX 4253443 . C T 2717 . AC=3;AF=1.00;AN=3;AS_AltDP=87;AS_QD=31.22;BaseQRankSum=-0.619;DP=94;ExcessHet=0.0000;FS=3.110;MQ=60.00;MQRankSum=0;QD=31.22;ReadPosRankSum=-1.14;SOR=0.332;VarDP=88 GT:AD:DP:GQ:PL:SB 1:1,37:38:99:1116,0:1,0,15,22 1/1:0,50:50:99:1631,150,0:0,0,27,23 +chrX 4253762 . C T 3863 . AC=3;AF=1.00;AN=3;AS_AltDP=120;AS_QD=32.44;DP=123;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.44;SOR=0.761;VarDP=120 GT:AD:DP:GQ:PL:SB 1:0,40:40:99:1270,0:0,0,21,19 1/1:0,80:80:99:2623,240,0:0,0,41,39 +chrX 4253785 . A T 3582 . AC=3;AF=1.00;AN=3;AS_AltDP=111;AS_QD=32.54;DP=116;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.54;SOR=0.748;VarDP=111 GT:AD:DP:GQ:PL:SB 1:0,35:35:99:1091,0:0,0,17,18 1/1:0,76:76:99:2521,229,0:0,0,40,36 +chrX 4254027 . C T 531 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=13.68;BaseQRankSum=1.38;DP=74;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.68;ReadPosRankSum=-0.822;SOR=0.793;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,620 0/1:21,20:41:99:.:561,0,567:10,11,9,11 +chrX 4254599 . ATGTG A 2746.97 . AC=3;AF=1.00;AN=3;AS_AltDP=63;AS_QD=32.73;DP=78;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.22;SOR=1.010;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:1050,0:0,0,14,10 1/1:0,39:39:99:1736,118,0:0,0,22,17 +chrX 4254986 . A C 2357 . AC=3;AF=1.00;AN=3;AS_AltDP=72;AS_QD=33.15;DP=74;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.15;SOR=0.749;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:998,0:0,0,12,17 1/1:0,43:43:99:1389,128,0:0,0,25,18 +chrX 4255677 . A G 2770 . AC=3;AF=1.00;AN=3;AS_AltDP=88;AS_QD=31.82;DP=91;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.82;SOR=0.786;VarDP=88 GT:AD:DP:GQ:PL:SB 1:0,43:43:99:1357,0:0,0,17,26 1/1:0,45:45:99:1443,134,0:0,0,25,20 +chrX 4256257 . G A 2644 . AC=3;AF=1.00;AN=3;AS_AltDP=83;AS_QD=32.22;DP=84;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.22;SOR=0.872;VarDP=83 GT:AD:DP:GQ:PL:SB 1:0,34:34:99:1087,0:0,0,14,20 1/1:0,49:49:99:1587,146,0:0,0,24,25 +chrX 4256331 . T G 2647 . AC=3;AF=1.00;AN=3;AS_AltDP=85;AS_QD=31.49;DP=88;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.49;SOR=0.765;VarDP=85 GT:AD:DP:GQ:PL:SB 1:0,37:37:99:1176,0:0,0,17,20 1/1:0,48:48:99:1501,144,0:0,0,24,24 +chrX 4256411 . G T 2819 . AC=3;AF=1.00;AN=3;AS_AltDP=88;AS_QD=32.38;DP=90;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.38;SOR=0.739;VarDP=88 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:814,0:0,0,14,11 1/1:0,63:63:99:2035,189,0:0,0,29,34 +chrX 4257010 . A C 2579 . AC=3;AF=1.00;AN=3;AS_AltDP=83;AS_QD=31.43;DP=85;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.43;SOR=1.179;VarDP=83 GT:AD:DP:GQ:PL:SB 1:0,22:22:99:694,0:0,0,8,14 1/1:0,61:61:99:1915,183,0:0,0,25,36 +chrX 4257344 . G A 791 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=13.03;BaseQRankSum=0.515;DP=96;ExcessHet=0.0000;FS=6.775;MQ=60.00;MQRankSum=0;QD=13.03;ReadPosRankSum=-0.474;SOR=0.601;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,586 0/1:32,31:63:99:.:821,0,852:20,12,14,17 +chrX 4257463 . G A 2860 . AC=3;AF=1.00;AN=3;AS_AltDP=90;AS_QD=32.11;DP=94;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.11;SOR=0.935;VarDP=90 GT:AD:DP:GQ:PL:SB 1:0,36:36:99:1114,0:0,0,17,19 1/1:0,54:54:99:1776,162,0:0,0,23,31 +chrX 4258370 . G A 2877 . AC=3;AF=1.00;AN=3;AS_AltDP=88;AS_QD=33.03;DP=89;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.03;SOR=0.887;VarDP=88 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:956,0:0,0,13,16 1/1:0,59:59:99:1951,177,0:0,0,27,32 +chrX 4259292 . T C 2699 . AC=3;AF=1.00;AN=3;AS_AltDP=84;AS_QD=32.49;DP=86;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.49;SOR=0.741;VarDP=84 GT:AD:DP:GQ:PL:SB 1:0,21:21:99:670,0:0,0,7,14 1/1:0,63:63:99:2059,189,0:0,0,34,29 +chrX 4259733 . CATATA C 3472.97 . AC=3;AF=1.00;AN=3;AS_AltDP=79;AS_QD=38.15;DP=87;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=43.90;SOR=0.303;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:1286,0:0,0,13,16 1/1:1,50:51:99:2226,129,0:0,1,23,27 +chrX 4262530 . G A 2421 . AC=3;AF=1.00;AN=3;AS_AltDP=74;AS_QD=33.12;DP=80;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.12;SOR=0.804;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:869,0:0,0,9,16 1/1:0,49:49:99:1582,146,0:0,0,26,23 +chrX 4262728 . G GGGAGACC 3154.97 . AC=3;AF=1.00;AN=3;AS_AltDP=71;AS_QD=38.51;DP=77;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.99;SOR=0.779;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:1305,0:0,0,19,10 1/1:0,42:42:99:1889,126,0:0,0,18,24 +chrX 4262974 . G GAA 1100.97 . AC=3;AF=1.00;AN=3;AS_AltDP=38;AS_QD=30.00;DP=61;ExcessHet=0.0000;FS=0.000;MQ=59.33;QD=30.00;SOR=0.914;VarDP=38 GT:AD:DP:GQ:PL:SB 1:0,11:11:99:329,0:0,0,7,4 1/1:0,27:27:80:811,80,0:0,0,14,13 +chrX 4263753 . T C 2930 . AC=3;AF=1.00;AN=3;AS_AltDP=90;AS_QD=32.89;DP=93;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.89;SOR=0.738;VarDP=90 GT:AD:DP:GQ:PL:SB 1:0,34:34:99:1114,0:0,0,21,13 1/1:0,56:56:99:1846,168,0:0,0,25,31 +chrX 4264015 . T C 3293 . AC=3;AF=1.00;AN=3;AS_AltDP=102;AS_QD=32.58;DP=103;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.58;SOR=0.859;VarDP=102 GT:AD:DP:GQ:PL:SB 1:0,45:45:99:1518,0:0,0,20,25 1/1:0,57:57:99:1805,170,0:0,0,27,30 +chrX 4264367 . G A 3052 . AC=3;AF=1.00;AN=3;AS_AltDP=94;AS_QD=32.79;DP=96;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.79;SOR=1.143;VarDP=94 GT:AD:DP:GQ:PL:SB 1:0,34:34:99:1082,0:0,0,14,20 1/1:0,60:60:99:2000,180,0:0,0,24,36 +chrX 4264392 . T A 2971 . AC=3;AF=1.00;AN=3;AS_AltDP=94;AS_QD=31.93;DP=98;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.93;SOR=0.780;VarDP=94 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:1057,0:0,0,15,18 1/1:0,61:61:99:1944,182,0:0,0,30,31 +chrX 4265348 . G C 806 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=17.06;BaseQRankSum=-0.259;DP=79;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=17.06;ReadPosRankSum=-0.934;SOR=0.723;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:26:99:26:0,393 0/1:19,30:49:99:.:836,0,468:9,10,14,16 +chrX 4266308 . A G 2196 . AC=3;AF=1.00;AN=3;AS_AltDP=71;AS_QD=31.35;DP=73;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.35;SOR=1.042;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:779,0:0,0,15,10 1/1:0,46:46:99:1447,137,0:0,0,26,20 +chrX 4267403 . A G 957 . AC=2;AF=0.667;AN=3;AS_AltDP=39;AS_QD=15.42;BaseQRankSum=1.819;DP=67;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=15.42;ReadPosRankSum=-0.4;SOR=0.713;VarDP=64 GT:AD:DP:GQ:PL:SB 1:1,25:26:99:733,0:0,1,9,16 0/1:24,14:38:99:254,0,676:9,15,5,9 +chrX 4267777 . T TATAATATATAGTATATTATAATAATATAGC 563.97 . AC=2;AF=0.667;AN=3;AS_AltDP=23;AS_QD=17.23;BaseQRankSum=1.465;DP=59;ExcessHet=0.0000;FS=23.457;MQ=49.51;MQRankSum=0.653;QD=17.23;ReadPosRankSum=-0.809;SOR=1.524;VarDP=35 GT:AD:DP:GQ:PL:SB 1:1,10:11:99:296,0:0,1,8,2 0/1:11,13:24:99:307,0,282:2,9,8,5 +chrX 4268498 . A T,AT 425 . AC=1,0;AF=0.333,0.00;AN=3;AS_AltDP=18,2;AS_QD=11.67,0.00;BaseQRankSum=-0.789;DP=74;ExcessHet=0.0000;FS=1.204;MQ=60.00;MQRankSum=0;QD=11.10;ReadPosRankSum=0.065;SOR=0.465;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,387,387 0/1:21,18,2:41:99:.:455,0,644,491,503,1077:12,9,10,10 +chrX 4268624 . G A 1519 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=19.12;BaseQRankSum=2.068;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=19.12;ReadPosRankSum=0.108;SOR=0.726;VarDP=81 GT:AD:DP:GQ:PL:SB 1:1,31:32:99:937,0:0,1,15,16 0/1:25,24:49:99:612,0,642:12,13,10,14 +chrX 4270565 . A G 803 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=15.72;BaseQRankSum=0.477;DP=83;ExcessHet=0.0000;FS=1.054;MQ=60.00;MQRankSum=0;QD=15.72;ReadPosRankSum=-0.206;SOR=0.759;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,520 0/1:23,30:53:99:.:833,0,590:12,11,14,16 +chrX 4270616 . A G 665 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=13.63;BaseQRankSum=-0.237;DP=84;ExcessHet=0.0000;FS=1.070;MQ=60.00;MQRankSum=0;QD=13.63;ReadPosRankSum=-0.935;SOR=0.906;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,520 0/1:24,27:51:99:.:695,0,629:11,13,11,16 +chrX 4271013 . A AAAT 1356.97 . AC=2;AF=0.667;AN=3;AS_AltDP=36;AS_QD=23.27;BaseQRankSum=0.396;DP=78;ExcessHet=0.0000;FS=7.060;MQ=60.00;MQRankSum=0;QD=23.27;ReadPosRankSum=0.542;SOR=0.651;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,16:16:99:646,0:0,0,10,6 0/1:24,20:44:99:750,0,947:15,9,6,14 +chrX 4271470 . C T 1623 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=22.96;BaseQRankSum=1.587;DP=78;ExcessHet=0.0000;FS=12.296;MQ=60.00;MQRankSum=0;QD=22.96;ReadPosRankSum=-1.872;SOR=1.566;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:958,0:0,0,20,9 0/1:19,24:43:99:695,0,481:8,11,16,8 +chrX 4273153 . TACACAC T,TACACACACACAC 2677.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=45,20;AS_QD=26.96,32.72;DP=78;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=41.80;SOR=0.925;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,28,0:28:99:1240,0,1240:0,0,16,12 1/2:0,17,20:37:99:1477,792,872,692,0,633:0,0,20,17 +chrX 4273361 . A T 1885 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=21.04;BaseQRankSum=0.876;DP=94;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=21.04;ReadPosRankSum=0.843;SOR=0.714;VarDP=91 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:1056,0:0,0,10,22 0/1:28,31:59:99:859,0,732:13,15,19,12 +chrX 4274169 . C T 2778 . AC=3;AF=1.00;AN=3;AS_AltDP=86;AS_QD=32.65;DP=86;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.65;SOR=0.947;VarDP=86 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:933,0:0,0,14,14 1/1:0,58:58:99:1875,173,0:0,0,34,24 +chrX 4274773 . A T 576 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=11.43;BaseQRankSum=2.943;DP=86;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=11.43;ReadPosRankSum=1.598;SOR=0.603;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,506 0/1:31,22:53:99:.:606,0,818:12,19,9,13 +chrX 4275168 . G A 756 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=14.56;BaseQRankSum=-1.295;DP=89;ExcessHet=0.0000;FS=2.389;MQ=60.00;MQRankSum=0;QD=14.56;ReadPosRankSum=-0.27;SOR=1.061;VarDP=54 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:32:99:32:.:.:0,506 0|1:24,30:54:99:.:0|1:4275168_G_A:786,0,887:4275168:15,9,21,9 +chrX 4275176 . T C 1620 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=18.33;BaseQRankSum=0.422;DP=94;ExcessHet=0.0000;FS=4.452;MQ=60.00;MQRankSum=0;QD=18.33;ReadPosRankSum=0.81;SOR=0.331;VarDP=90 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,35:35:99:.:.:1096,0:.:0,0,20,15 0|1:33,22:55:99:1|0:4275168_G_A:554,0,1268:4275168:24,9,15,7 +chrX 4275927 . C CA 642.97 . AC=2;AF=0.667;AN=3;AS_AltDP=39;AS_QD=12.18;BaseQRankSum=1.037;DP=76;ExcessHet=0.0000;FS=1.124;MQ=60.00;MQRankSum=0;QD=12.18;ReadPosRankSum=-0.228;SOR=0.459;VarDP=56 GT:AD:DP:GQ:PL:SB 1:1,22:23:99:420,0:0,1,10,12 0/1:16,17:33:99:262,0,271:10,6,10,7 +chrX 4277714 . CTTT C,* 576.97 . AC=2,0;AF=0.667,0.00;AN=3;AS_AltDP=17,0;AS_QD=28.00,0.00;BaseQRankSum=-0.674;DP=57;ExcessHet=0.0000;FS=2.622;MQ=57.96;MQRankSum=0.549;QD=28.00;ReadPosRankSum=2.881;SOR=1.981;VarDP=22 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,12,0:12:99:.:.:433,0,644:.:0,0,2,4 0|1:5,5,0:10:99:0|1:4277714_CTTT_*:183,0,142,237,197,888:4277714:2,3,0,5 +chrX 4277715 . T *,C,TTCC 597 . AC=2,0,1;AF=0.667,0.00,0.333;AN=3;AS_AltDP=5,1,1;AS_QD=0.00,29.53,35.15;DP=56;ExcessHet=0.0000;FS=0.000;MQ=57.27;QD=89.57;SOR=2.833;VarDP=7 GT:AD:DP:GQ:PL:SB 1:0,12,0,0:12:99:433,0,644,644:0,0,2,4 1/3:0,5,1,1:7:19:627,40,79,395,19,680,294,0,495,574:0,0,0,7 +chrX 4277718 . CTTTCT *,C,CTTCT 564.97 . AC=0,1,1;AF=0.00,0.333,0.333;AN=3;AS_AltDP=0,6,5;AS_QD=0.00,31.13,17.10;BaseQRankSum=0.674;DP=57;ExcessHet=0.0000;FS=2.622;MQ=57.96;MQRankSum=0.549;QD=37.75;ReadPosRankSum=2.881;SOR=1.981;VarDP=16 GT:AD:DP:GQ:PL:SB 2:0,0,6,0:6:99:433,854,0,644:0,0,2,4 0/3:5,0,0,5:10:99:171,225,876,208,512,563,0,197,178,245:2,3,0,5 +chrX 4277719 . T *,C 682 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=5,2;AS_QD=0.00,29.97;DP=57;ExcessHet=0.0000;FS=0.000;MQ=57.36;QD=101.71;SOR=2.833;VarDP=7 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,6,0:6:99:.:.:433,0,644:.:0,0,2,4 1|2:0,5,2:7:83:1|0:4277714_CTTT_*:712,83,119,225,0,500:4277714:0,0,0,7 +chrX 4277723 . T *,C 734 . AC=1,2;AF=0.333,0.667;AN=3;AS_AltDP=0,10;AS_QD=25.10,27.97;DP=56;ExcessHet=0.0000;FS=0.000;MQ=57.27;QD=76.40;SOR=3.258;VarDP=10 GT:AD:DP:GQ:PL:SB 1:0,6,0:6:99:433,0,644:0,0,2,4 2/2:0,0,10:10:39:764,431,508,52,39,0:0,0,0,10 +chrX 4277727 . T C 498 . AC=2;AF=0.667;AN=3;AS_AltDP=17;AS_QD=17.60;BaseQRankSum=0.782;DP=55;ExcessHet=0.0000;FS=2.315;MQ=57.88;MQRankSum=0.69;QD=17.60;ReadPosRankSum=-0.498;SOR=0.223;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,12:12:99:433,0:0,0,2,4 0/1:13,5:18:95:95,0,404:2,11,0,1 +chrX 4278159 . G A 2144 . AC=3;AF=1.00;AN=3;AS_AltDP=66;AS_QD=32.94;DP=68;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.94;SOR=1.112;VarDP=66 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:774,0:0,0,14,10 1/1:0,42:42:99:1400,126,0:0,0,25,17 +chrX 4279159 . G T 3029 . AC=3;AF=1.00;AN=3;AS_AltDP=93;AS_QD=32.54;BaseQRankSum=2.354;DP=98;ExcessHet=0.0000;FS=3.297;MQ=60.00;MQRankSum=0;QD=32.54;ReadPosRankSum=-1.388;SOR=0.466;VarDP=94 GT:AD:DP:GQ:PL:SB 1:1,29:30:99:937,0:1,0,15,14 1/1:0,64:64:99:2122,192,0:0,0,28,36 +chrX 4280144 . T C 2783 . AC=3;AF=1.00;AN=3;AS_AltDP=87;AS_QD=32.33;DP=89;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.33;SOR=0.972;VarDP=87 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:962,0:0,0,13,17 1/1:0,57:57:99:1851,171,0:0,0,25,32 +chrX 4280681 . T C 1959 . AC=3;AF=1.00;AN=3;AS_AltDP=63;AS_QD=31.57;DP=65;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.57;SOR=0.790;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:834,0:0,0,13,13 1/1:0,37:37:99:1155,109,0:0,0,17,20 +chrX 4281419 . T C 1522 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=20.16;BaseQRankSum=0.7;DP=80;ExcessHet=0.0000;FS=0.915;MQ=60.00;MQRankSum=0;QD=20.16;ReadPosRankSum=-0.744;SOR=0.555;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,22:22:99:735,0:0,0,10,12 0/1:25,30:55:99:817,0,633:11,14,15,15 +chrX 4281527 . A T 1856 . AC=3;AF=1.00;AN=3;AS_AltDP=57;AS_QD=33.09;DP=59;ExcessHet=0.0000;FS=0.000;MQ=59.65;QD=33.09;SOR=0.800;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,20:20:99:650,0:0,0,8,12 1/1:0,37:37:99:1236,111,0:0,0,19,18 +chrX 4281547 . C CTT 1130.97 . AC=3;AF=1.00;AN=3;AS_AltDP=41;AS_QD=27.86;BaseQRankSum=-0.443;DP=63;ExcessHet=0.0000;FS=3.680;MQ=59.42;MQRankSum=3.88;QD=27.86;ReadPosRankSum=1.672;SOR=0.779;VarDP=42 GT:AD:DP:GQ:PL:SB 1:0,14:14:99:406,0:0,0,5,9 1/1:1,27:28:53:764,53,0:1,0,12,15 +chrX 4282011 . A T 2385 . AC=3;AF=1.00;AN=3;AS_AltDP=74;AS_QD=32.64;DP=78;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.64;SOR=1.209;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:774,0:0,0,11,13 1/1:0,50:50:99:1641,150,0:0,0,18,32 +chrX 4283127 . A T 2403 . AC=3;AF=1.00;AN=3;AS_AltDP=77;AS_QD=31.60;DP=80;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.60;SOR=0.887;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,34:34:99:1060,0:0,0,16,18 1/1:0,43:43:99:1373,128,0:0,0,19,24 +chrX 4283234 . C T 1342 . AC=2;AF=0.667;AN=3;AS_AltDP=45;AS_QD=18.29;BaseQRankSum=2.276;DP=79;ExcessHet=0.0000;FS=3.202;MQ=60.00;MQRankSum=0;QD=18.29;ReadPosRankSum=-0.05;SOR=1.154;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:1016,0:0,0,19,12 0/1:30,14:44:99:356,0,776:15,15,8,6 +chrX 4285013 . T G 771 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=13.35;BaseQRankSum=-0.128;DP=89;ExcessHet=0.0000;FS=9.192;MQ=60.00;MQRankSum=0;QD=13.35;ReadPosRankSum=-1.095;SOR=1.017;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:99:28:0,491 0/1:29,31:60:99:.:801,0,741:18,11,12,19 +chrX 4285135 . G A 2622 . AC=3;AF=1.00;AN=3;AS_AltDP=79;AS_QD=33.15;BaseQRankSum=2.758;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=33.15;ReadPosRankSum=-1.464;SOR=0.425;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,22:22:99:764,0:0,0,11,11 1/1:1,57:58:99:1888,164,0:0,1,21,36 +chrX 4285961 . C T 998 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=33.16;DP=92;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.16;SOR=1.402;VarDP=31 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,31:31:99:.:1028,0:0,0,11,20 0/0:.:60:60:60:0,60,883 +chrX 4286450 . T A 2841 . AC=3;AF=1.00;AN=3;AS_AltDP=86;AS_QD=33.38;DP=88;ExcessHet=0.0000;FS=0.000;MQ=59.81;QD=33.38;SOR=1.005;VarDP=86 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:950,0:0,0,15,13 1/1:0,58:58:99:1921,174,0:0,0,34,24 +chrX 4286717 . T C 648 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=11.30;BaseQRankSum=-1.813;DP=95;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=11.30;ReadPosRankSum=-0.66;SOR=0.743;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:34:99:34:0,874 0/1:32,28:60:99:.:678,0,882:19,13,17,11 +chrX 4286939 . C A 2749 . AC=3;AF=1.00;AN=3;AS_AltDP=85;AS_QD=32.69;DP=86;ExcessHet=0.0000;FS=0.000;MQ=59.72;QD=32.69;SOR=0.716;VarDP=85 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:1022,0:0,0,16,16 1/1:0,53:53:99:1757,159,0:0,0,26,27 +chrX 4287418 . T C 2362 . AC=3;AF=1.00;AN=3;AS_AltDP=61;AS_QD=35.73;DP=70;ExcessHet=0.0000;FS=0.000;MQ=59.32;QD=39.21;SOR=1.022;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:1318,0:0,0,15,15 1/1:0,31:31:93:1074,93,0:0,0,20,11 +chrX 4287419 . G GCACACACA,GCGCGCACACACA 2213.97 . AC=1,2;AF=0.333,0.667;AN=3;AS_AltDP=15,32;AS_QD=33.24,28.36;DP=70;ExcessHet=0.0000;FS=0.000;MQ=59.32;QD=47.94;SOR=1.378;VarDP=47 GT:AD:DP:GQ:PL:SB 2:0,0,24:24:99:1214,1283,0:0,0,14,10 1/2:0,15,8:23:99:1039,295,291,616,0,844:0,0,16,7 +chrX 4287532 . A G 761 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=20.28;BaseQRankSum=-0.232;DP=71;ExcessHet=0.0000;FS=7.588;MQ=60.00;MQRankSum=0;QD=20.28;ReadPosRankSum=0.625;SOR=1.429;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,749 0/1:12,27:39:99:.:791,0,290:7,5,9,18 +chrX 4287677 . G T 2719 . AC=3;AF=1.00;AN=3;AS_AltDP=83;AS_QD=33.12;DP=84;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.12;SOR=0.987;VarDP=83 GT:AD:DP:GQ:PL:SB 1:0,39:39:99:1306,0:0,0,25,14 1/1:0,44:44:99:1443,132,0:0,0,22,22 +chrX 4287855 . A AAGG 2947.97 . AC=3;AF=1.00;AN=3;AS_AltDP=67;AS_QD=37.61;DP=73;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.58;SOR=0.917;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,22:22:99:981,0:0,0,7,15 1/1:0,45:45:99:2006,135,0:0,0,23,22 +chrX 4287896 . C T 694 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=16.09;BaseQRankSum=-0.722;DP=69;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=16.09;ReadPosRankSum=0.506;SOR=0.742;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:22:99:22:0,575 0/1:19,26:45:99:.:724,0,516:10,9,14,12 +chrX 4288244 . C G 2054 . AC=3;AF=1.00;AN=3;AS_AltDP=65;AS_QD=32.06;DP=66;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.06;SOR=0.925;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:824,0:0,0,14,11 1/1:0,40:40:99:1260,120,0:0,0,22,18 +chrX 4288425 . G C 2242 . AC=3;AF=1.00;AN=3;AS_AltDP=70;AS_QD=32.46;DP=72;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.46;SOR=1.329;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,19:19:99:640,0:0,0,11,8 1/1:0,51:51:99:1632,153,0:0,0,33,18 +chrX 4289152 . G A 840 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=17.76;BaseQRankSum=1.916;DP=83;ExcessHet=0.0000;FS=10.663;MQ=60.00;MQRankSum=0;QD=17.76;ReadPosRankSum=0.616;SOR=1.149;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,596 0/1:19,30:49:99:.:870,0,473:7,12,19,11 +chrX 4289743 . C T 649 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=15.79;BaseQRankSum=1.973;DP=77;ExcessHet=0.0000;FS=7.029;MQ=60.00;MQRankSum=0;QD=15.79;ReadPosRankSum=-0.183;SOR=1.959;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,596 0/1:19,24:43:99:.:679,0,482:10,9,18,6 +chrX 4289935 . A AGT 1469.97 . AC=3;AF=1.00;AN=3;AS_AltDP=52;AS_QD=26.95;BaseQRankSum=0.251;DP=72;ExcessHet=0.0000;FS=9.204;MQ=59.71;MQRankSum=0;QD=26.95;ReadPosRankSum=0.479;SOR=0.045;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,20:20:99:619,0:0,0,12,8 1/1:4,32:36:29:890,29,0:4,0,15,17 +chrX 4290338 . G A 2101 . AC=2;AF=0.667;AN=3;AS_AltDP=69;AS_QD=23.68;BaseQRankSum=0.143;DP=95;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=23.68;ReadPosRankSum=0.177;SOR=0.691;VarDP=90 GT:AD:DP:GQ:PL:SB 1:0,42:42:99:1398,0:0,0,21,21 0/1:21,27:48:99:733,0,536:11,10,15,12 +chrX 4290557 . G A 2378 . AC=3;AF=1.00;AN=3;AS_AltDP=73;AS_QD=32.99;DP=78;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.99;SOR=0.836;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:1018,0:0,0,12,19 1/1:0,42:42:99:1390,126,0:0,0,22,20 +chrX 4290774 . G A 1792 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=21.44;BaseQRankSum=0.359;DP=89;ExcessHet=0.0000;FS=6.272;MQ=60.00;MQRankSum=0;QD=21.44;ReadPosRankSum=0.264;SOR=0.395;VarDP=85 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:988,0:0,0,17,12 0/1:25,31:56:99:834,0,641:9,16,14,17 +chrX 4290860 . C A 2540 . AC=3;AF=1.00;AN=3;AS_AltDP=79;AS_QD=32.13;BaseQRankSum=2.286;DP=81;ExcessHet=0.0000;FS=3.120;MQ=60.00;MQRankSum=0;QD=32.13;ReadPosRankSum=-1.606;SOR=0.343;VarDP=80 GT:AD:DP:GQ:PL:SB 1:1,26:27:99:817,0:1,0,15,11 1/1:0,53:53:99:1753,159,0:0,0,23,30 +chrX 4291176 . TTATATGTAAC T 1863.97 . AC=2;AF=0.667;AN=3;AS_AltDP=46;AS_QD=25.72;BaseQRankSum=0.716;DP=79;ExcessHet=0.0000;FS=1.989;MQ=60.00;MQRankSum=0;QD=25.72;ReadPosRankSum=1.213;SOR=0.771;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:1115,0:0,0,10,15 0/1:28,21:49:99:788,0,1090:15,13,11,10 +chrX 4291783 . A ATTTTTCTC 2671.97 . AC=3;AF=1.00;AN=3;AS_AltDP=61;AS_QD=30.48;DP=75;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.44;SOR=0.793;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,21:21:99:913,0:0,0,11,10 1/1:0,40:40:99:1798,119,0:0,0,18,22 +chrX 4292424 . TACACACAC TAC,T 1909.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=32,13;AS_QD=29.58,31.60;DP=65;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.31;SOR=0.829;VarDP=45 GT:AD:DP:GQ:PL:SB 1:0,19,0:19:99:856,0,856:0,0,9,10 1/2:0,13,13:26:99:1093,411,334,393,0,316:0,0,12,14 +chrX 4292670 . G C 2247 . AC=3;AF=1.00;AN=3;AS_AltDP=70;AS_QD=32.53;DP=72;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.53;SOR=0.941;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:923,0:0,0,14,14 1/1:0,42:42:99:1354,125,0:0,0,17,25 +chrX 4292738 . A T 1211 . AC=2;AF=0.667;AN=3;AS_AltDP=45;AS_QD=19.09;BaseQRankSum=2.377;DP=73;ExcessHet=0.0000;FS=3.946;MQ=60.00;MQRankSum=0;QD=19.09;ReadPosRankSum=-0.161;SOR=0.283;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:720,0:0,0,15,9 0/1:20,21:41:99:521,0,497:13,6,8,11 +chrX 4292858 . C T 579 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=13.53;BaseQRankSum=-2.441;DP=82;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.53;ReadPosRankSum=0.706;SOR=0.610;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:33:99:33:0,782 0/1:21,24:45:99:.:609,0,568:11,10,12,12 +chrX 4293031 . T TATCAATCA,TATCTATCAATCA,TATCTATCTATCTATCAATCA,TATCTATCTATCTATCTATCAATCA 1220.97 . AC=0,1,0,1;AF=0.00,0.333,0.00,0.333;AN=3;AS_AltDP=0,19,0,6;AS_QD=7.00,22.91,2.40,8.13;BaseQRankSum=-2.092;DP=72;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=25.20;ReadPosRankSum=1.687;SOR=0.555;VarDP=50 GT:AD:DP:GQ:PL:SB 2:0,0,19,0,0:19:99:1008,873,0,941,941:0,0,9,10 0/4:25,0,0,0,6:31:99:252,212,1586,202,1337,1302,192,1179,1150,1097,0,987,971,823,939:11,14,3,3 +chrX 4293034 . C CT 587.97 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=18.44;BaseQRankSum=2.305;DP=68;ExcessHet=0.0000;FS=1.377;MQ=60.00;MQRankSum=0;QD=18.44;ReadPosRankSum=1.595;SOR=0.425;VarDP=34 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:24:99:24:0,481 0/1:13,21:34:99:.:627,0,270:8,5,11,10 +chrX 4293035 . A AATCAATCT,ATCTATCTATCAATCAATCT,ATCTATCTATCTATCAATCAATCT 729.97 . AC=0,1,0;AF=0.00,0.333,0.00;AN=3;AS_AltDP=0,18,0;AS_QD=3.08,24.81,11.85;BaseQRankSum=1.808;DP=68;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=24.81;ReadPosRankSum=1.422;SOR=0.509;VarDP=31 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:24:99:24:0,481,481,481 0/2:13,0,18,0:31:99:.:769,729,1533,0,480,401,615,1112,329,1070:8,5,10,8 +chrX 4293152 . C CATCT 2964.97 . AC=3;AF=1.00;AN=3;AS_AltDP=67;AS_QD=34.49;DP=74;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.84;SOR=0.784;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,21:21:99:940,0:0,0,8,13 1/1:0,46:46:99:2064,138,0:0,0,24,22 +chrX 4293491 . T TTATCTATCTATCTATCTATC 2644.97 . AC=3;AF=1.00;AN=3;AS_AltDP=60;AS_QD=27.58;DP=81;ExcessHet=0.0000;FS=0.000;MQ=59.81;QD=44.73;SOR=1.071;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:1028,0:0,0,11,12 1/1:0,37:37:99:1656,110,0:0,0,24,13 +chrX 4293569 . GTCTGTCTA G 679.97 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=31.10;DP=58;ExcessHet=0.0000;FS=0.000;MQ=58.77;QD=39.94;SOR=1.493;VarDP=18 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,18:18:99:.:719,0:0,0,12,6 0/0:.:40:83:40:0,83,1101 +chrX 4293573 . GTCTA *,G,ATCTA 1174 . AC=1,1,1;AF=0.333,0.333,0.333;AN=3;AS_AltDP=0,12,25;AS_QD=26.11,33.92,29.56;DP=69;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.54;SOR=0.884;VarDP=37 GT:AD:DP:GQ:PL:SB 1:0,18,0,0:18:99:719,0,719,719:0,0,12,6 2/3:0,0,12,25:37:99:1204,1276,1485,797,939,968,465,616,0,653:0,0,18,19 +chrX 4293640 . C CATCT,CATCTATCT 1105.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=14,14;AS_QD=22.21,18.68;BaseQRankSum=0.323;DP=71;ExcessHet=0.0000;FS=1.345;MQ=60.00;MQRankSum=0;QD=27.26;ReadPosRankSum=-1.265;SOR=0.382;VarDP=42 GT:AD:DP:GQ:PL:SB 1:0,14,0:14:99:622,0,623:0,0,3,11 0/2:14,0,14:28:99:523,566,1137,0,571,529:4,10,8,6 +chrX 4294608 . A G 2711 . AC=3;AF=1.00;AN=3;AS_AltDP=85;AS_QD=32.25;DP=87;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.25;SOR=0.716;VarDP=85 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:862,0:0,0,11,15 1/1:0,59:59:99:1879,176,0:0,0,31,28 +chrX 4294914 . A G 810 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=12.17;BaseQRankSum=0.568;DP=99;ExcessHet=0.0000;FS=1.984;MQ=60.00;MQRankSum=0;QD=12.17;ReadPosRankSum=-0.771;SOR=0.468;VarDP=69 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,556 0/1:37,32:69:99:.:840,0,999:21,16,16,16 +chrX 4296151 . GTAGATAGATAGA GTAGA,G 2256.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=39,16;AS_QD=30.58,32.82;DP=76;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=41.75;SOR=0.804;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,14,0:14:99:622,0,622:0,0,5,9 1/2:0,25,16:41:99:1674,664,588,1015,0,1099:0,0,21,20 +chrX 4296635 . T A 589 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=15.48;BaseQRankSum=-0.606;DP=63;ExcessHet=0.0000;FS=1.260;MQ=60.00;MQRankSum=0;QD=15.48;ReadPosRankSum=0.926;SOR=1.051;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:23:99:23:0,397 0/1:16,24:40:99:.:619,0,396:8,8,10,14 +chrX 4296820 . C T 2068 . AC=3;AF=1.00;AN=3;AS_AltDP=66;AS_QD=31.79;DP=70;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.79;SOR=0.818;VarDP=66 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:770,0:0,0,13,10 1/1:0,43:43:99:1328,129,0:0,0,18,25 +chrX 4297195 . T A 525 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=15.86;BaseQRankSum=0.272;DP=65;ExcessHet=0.0000;FS=1.301;MQ=59.81;MQRankSum=-0.808;QD=15.86;ReadPosRankSum=0.834;SOR=0.974;VarDP=35 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,576 0/1:15,20:35:99:.:555,0,395:7,8,8,12 +chrX 4297545 . G T 1641 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=19.66;BaseQRankSum=1.696;DP=86;ExcessHet=0.0000;FS=0.859;MQ=60.00;MQRankSum=0;QD=19.66;ReadPosRankSum=1.303;SOR=0.884;VarDP=85 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:943,0:0,0,11,17 0/1:30,27:57:99:728,0,740:15,15,19,8 +chrX 4297911 . T C 2675 . AC=3;AF=1.00;AN=3;AS_AltDP=82;AS_QD=32.99;DP=86;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.99;SOR=0.902;VarDP=82 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:794,0:0,0,10,14 1/1:0,58:58:99:1911,174,0:0,0,27,31 +chrX 4298667 . C T 1871 . AC=3;AF=1.00;AN=3;AS_AltDP=57;AS_QD=33.35;DP=59;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.35;SOR=0.728;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,17:17:99:561,0:0,0,13,4 1/1:0,40:40:99:1340,120,0:0,0,16,24 +chrX 4298993 . C T 967 . AC=2;AF=0.667;AN=3;AS_AltDP=33;AS_QD=16.62;BaseQRankSum=4.588;DP=63;ExcessHet=0.0000;FS=6.930;MQ=60.00;MQRankSum=0;QD=16.62;ReadPosRankSum=-1.215;SOR=0.579;VarDP=60 GT:AD:DP:GQ:PL:SB 1:1,19:20:99:650,0:1,0,9,10 0/1:26,14:40:99:347,0,689:16,10,6,8 +chrX 4299325 . A AAG 2365.97 . AC=3;AF=1.00;AN=3;AS_AltDP=69;AS_QD=34.86;DP=80;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=34.86;SOR=0.844;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:815,0:0,0,11,12 1/1:0,46:46:99:1590,138,0:0,0,21,25 +chrX 4299727 . T C 2203 . AC=3;AF=1.00;AN=3;AS_AltDP=70;AS_QD=31.90;DP=73;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.90;SOR=1.011;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:908,0:0,0,12,16 1/1:0,42:42:99:1325,126,0:0,0,18,24 +chrX 4299792 . GTTGTTT G 2415.97 . AC=3;AF=1.00;AN=3;AS_AltDP=55;AS_QD=32.78;DP=63;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.64;SOR=1.061;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:1159,0:0,0,10,16 1/1:0,29:29:88:1296,88,0:0,0,13,16 +chrX 4300313 . T C 2232 . AC=3;AF=1.00;AN=3;AS_AltDP=69;AS_QD=32.78;DP=70;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.78;SOR=1.054;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:754,0:0,0,13,10 1/1:0,46:46:99:1508,137,0:0,0,27,19 +chrX 4300811 . C T 2068 . AC=3;AF=1.00;AN=3;AS_AltDP=64;AS_QD=32.78;DP=67;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.78;SOR=0.822;VarDP=64 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,20:20:99:.:.:610,0:.:0,0,11,9 1|1:0,44:44:99:0|1:4300811_C_T:1488,132,0:4300811:0,0,23,21 +chrX 4300924 . C T 663 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=16.50;BaseQRankSum=-0.675;DP=70;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=16.50;ReadPosRankSum=1.756;SOR=0.678;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:99:28:0,605 0/1:17,25:42:99:.:693,0,445:8,9,13,12 +chrX 4301881 . G C 2480 . AC=3;AF=1.00;AN=3;AS_AltDP=77;AS_QD=32.60;DP=78;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.60;SOR=0.887;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:770,0:0,0,10,13 1/1:0,54:54:99:1740,161,0:0,0,25,29 +chrX 4301957 . C T 515 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=11.35;BaseQRankSum=-1.179;DP=67;ExcessHet=0.0000;FS=6.121;MQ=60.00;MQRankSum=0;QD=11.35;ReadPosRankSum=-0.125;SOR=1.071;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:18:99:18:0,412 0/1:27,21:48:99:.:545,0,773:16,11,8,13 +chrX 4302048 . T C 1751 . AC=3;AF=1.00;AN=3;AS_AltDP=54;AS_QD=32.98;DP=55;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.98;SOR=0.846;VarDP=54 GT:AD:DP:GQ:PL:SB 1:0,14:14:99:456,0:0,0,4,10 1/1:0,40:40:99:1325,120,0:0,0,21,19 +chrX 4302287 . C G 1785 . AC=3;AF=1.00;AN=3;AS_AltDP=57;AS_QD=31.84;DP=58;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.84;SOR=1.140;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,16:16:99:501,0:0,0,10,6 1/1:0,41:41:99:1314,122,0:0,0,24,17 +chrX 4302678 . A G 2402 . AC=3;AF=1.00;AN=3;AS_AltDP=73;AS_QD=32.86;BaseQRankSum=2.902;DP=81;ExcessHet=0.0000;FS=3.129;MQ=60.00;MQRankSum=0;QD=32.86;ReadPosRankSum=-1.529;SOR=0.353;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:764,0:0,0,12,11 1/1:1,50:51:99:1668,143,0:0,1,26,24 +chrX 4303143 . C G 2073 . AC=3;AF=1.00;AN=3;AS_AltDP=67;AS_QD=31.39;DP=69;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.39;SOR=0.990;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,21:21:99:645,0:0,0,13,8 1/1:0,46:46:99:1458,136,0:0,0,25,21 +chrX 4306408 . T A 2183 . AC=3;AF=1.00;AN=3;AS_AltDP=69;AS_QD=32.07;DP=73;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.07;SOR=1.131;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:813,0:0,0,12,15 1/1:0,42:42:99:1400,125,0:0,0,16,26 +chrX 4309686 . T C 2358 . AC=3;AF=1.00;AN=3;AS_AltDP=79;AS_QD=29.85;BaseQRankSum=-0.574;DP=82;ExcessHet=0.0000;FS=3.590;MQ=60.00;MQRankSum=0;QD=29.85;ReadPosRankSum=-0.353;SOR=0.682;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:777,0:0,0,12,14 1/1:1,53:54:99:1611,126,0:0,1,33,20 +chrX 4311880 . A C 2414 . AC=3;AF=1.00;AN=3;AS_AltDP=79;AS_QD=30.94;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.94;SOR=0.770;VarDP=79 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:803,0:0,0,16,10 1/1:0,53:53:99:1641,158,0:0,0,25,28 +chrX 4312591 . C T 3123 . AC=3;AF=1.00;AN=3;AS_AltDP=94;AS_QD=33.54;DP=97;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.54;SOR=0.736;VarDP=94 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:981,0:0,0,13,17 1/1:0,64:64:99:2172,192,0:0,0,35,29 +chrX 4314292 . CA C,AA 370 . AC=2,0;AF=0.667,0.00;AN=3;AS_AltDP=26,3;AS_QD=10.00,0.00;BaseQRankSum=1.074;DP=65;ExcessHet=0.0000;FS=10.051;MQ=59.05;MQRankSum=2.446;QD=9.30;ReadPosRankSum=0.607;SOR=0.222;VarDP=43 GT:AD:DP:GQ:PL:SB 1:1,12,0:13:99:208,0,225:0,1,7,5 0/1:13,14,3:30:99:192,0,257,220,191,926:11,2,7,10 +chrX 4314461 . G GAA 1601.97 . AC=3;AF=1.00;AN=3;AS_AltDP=54;AS_QD=30.39;DP=75;ExcessHet=0.0000;FS=0.000;MQ=59.20;QD=30.39;SOR=0.693;VarDP=54 GT:AD:DP:GQ:PL:SB 1:0,15:15:99:465,0:0,0,7,8 1/1:0,39:39:99:1176,117,0:0,0,20,19 +chrX 4316625 . CT C 740.97 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=15.60;BaseQRankSum=-0.306;DP=80;ExcessHet=0.0000;FS=1.093;MQ=60.00;MQRankSum=0;QD=15.60;ReadPosRankSum=-0.961;SOR=0.588;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:99:28:0,381 0/1:25,25:50:99:.:780,0,784:11,14,13,12 +chrX 4319883 . CA C 2550.97 . AC=3;AF=1.00;AN=3;AS_AltDP=73;AS_QD=31.96;DP=77;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=35.48;SOR=1.340;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:821,0:0,0,7,16 1/1:0,50:50:99:1769,150,0:0,0,20,30 +chrX 4321790 . A T 2141 . AC=3;AF=1.00;AN=3;AS_AltDP=67;AS_QD=32.40;DP=75;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.40;SOR=1.146;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,22:22:99:697,0:0,0,8,14 1/1:0,45:45:99:1474,135,0:0,0,19,26 +chrX 4326634 . G T 1092 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=33.00;DP=81;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.00;SOR=0.941;VarDP=34 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,34:34:99:.:1122,0:0,0,15,19 0/0:.:47:37:46:0,37,1087 +chrX 4329120 . A C 2390 . AC=3;AF=1.00;AN=3;AS_AltDP=77;AS_QD=31.43;DP=79;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.43;SOR=0.887;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:947,0:0,0,14,17 1/1:0,46:46:99:1473,138,0:0,0,28,18 +chrX 4332478 . T G 604 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=13.21;BaseQRankSum=-0.065;DP=77;ExcessHet=0.0000;FS=1.127;MQ=60.00;MQRankSum=0;QD=13.21;ReadPosRankSum=0.547;SOR=0.441;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,481 0/1:25,23:48:99:.:634,0,704:10,15,11,12 +chrX 4334424 . T A 2841 . AC=3;AF=1.00;AN=3;AS_AltDP=89;AS_QD=31.55;BaseQRankSum=-0.312;DP=91;ExcessHet=0.0000;FS=2.969;MQ=60.00;MQRankSum=0;QD=31.55;ReadPosRankSum=0.728;SOR=0.166;VarDP=91 GT:AD:DP:GQ:PL:SB 1:1,30:31:99:928,0:0,1,13,17 1/1:1,59:60:99:1943,146,0:0,1,26,33 +chrX 4335626 . CTCTA ATCTA,C 103 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=4,2;AS_QD=6.24,0.11;BaseQRankSum=0.841;DP=49;ExcessHet=0.0000;FS=4.669;MQ=57.88;MQRankSum=0.838;QD=5.78;ReadPosRankSum=0.266;SOR=1.137;VarDP=23 GT:AD:DP:GQ:PL:SB 1:0,4,0:4:99:131,0,132:0,0,2,2 0/2:17,0,2:19:2:2,52,572,0,520,514:6,11,2,0 +chrX 4335628 . C A,CTATA,* 445 . AC=1,0,1;AF=0.333,0.00,0.333;AN=3;AS_AltDP=4,0,0;AS_QD=29.14,32.21,31.56;DP=50;ExcessHet=0.0000;FS=4.669;MQ=59.01;QD=118.75;SOR=1.137;VarDP=4 GT:AD:DP:GQ:PL:SB 1:0,4,0,0:4:99:475,0,306,391:0,0,2,2 0/3:17,0,0,2:19:2:2,52,572,52,572,572,0,520,520,514:6,11,2,0 +chrX 4335630 . A *,C 201 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=2,6;AS_QD=0.00,19.25;BaseQRankSum=0.605;DP=58;ExcessHet=0.0000;FS=10.710;MQ=57.08;MQRankSum=-0.293;QD=16.50;ReadPosRankSum=0.065;SOR=0.020;VarDP=14 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:99:28:0,253,253 0/2:6,2,6:14:41:.:231,41,237,0,43,278:0,6,4,4 +chrX 4343484 . G T 1891 . AC=2;AF=0.667;AN=3;AS_AltDP=64;AS_QD=21.34;BaseQRankSum=-0.358;DP=98;ExcessHet=0.0000;FS=10.074;MQ=60.00;MQRankSum=0;QD=21.34;ReadPosRankSum=-0.353;SOR=0.166;VarDP=90 GT:AD:DP:GQ:PL:SB 1:0,34:34:99:1117,0:0,0,17,17 0/1:26,30:56:99:804,0,685:7,19,14,16 +chrX 4343750 . C T 2636 . AC=3;AF=1.00;AN=3;AS_AltDP=80;AS_QD=33.33;DP=80;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.33;SOR=0.743;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:919,0:0,0,12,15 1/1:0,53:53:99:1747,159,0:0,0,27,26 +chrX 4343902 . T C 2958 . AC=3;AF=1.00;AN=3;AS_AltDP=92;AS_QD=32.48;DP=94;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.48;SOR=0.693;VarDP=92 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:943,0:0,0,12,18 1/1:0,62:62:99:2045,186,0:0,0,34,28 +chrX 4346468 . C G 558 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=13.36;BaseQRankSum=1.657;DP=77;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.36;ReadPosRankSum=0.259;SOR=0.714;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,535 0/1:23,21:44:99:.:588,0,602:12,11,10,11 +chrX 4346846 . C G 2733 . AC=3;AF=1.00;AN=3;AS_AltDP=85;AS_QD=32.51;DP=87;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.51;SOR=1.375;VarDP=85 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:1076,0:0,0,18,15 1/1:0,52:52:99:1687,156,0:0,0,36,16 +chrX 4349936 . A G 2604 . AC=3;AF=1.00;AN=3;AS_AltDP=79;AS_QD=33.34;DP=85;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.34;SOR=0.770;VarDP=79 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:933,0:0,0,17,11 1/1:0,51:51:99:1701,153,0:0,0,24,27 +chrX 4351881 . C T 3183 . AC=3;AF=1.00;AN=3;AS_AltDP=98;AS_QD=32.79;DP=105;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.79;SOR=1.426;VarDP=98 GT:AD:DP:GQ:PL:SB 1:0,37:37:99:1174,0:0,0,12,25 1/1:0,61:61:99:2039,183,0:0,0,23,38 +chrX 4352640 . C T 2809 . AC=3;AF=1.00;AN=3;AS_AltDP=86;AS_QD=33.01;DP=88;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.01;SOR=1.005;VarDP=86 GT:AD:DP:GQ:PL:SB 1:0,40:40:99:1280,0:0,0,23,17 1/1:0,46:46:99:1559,138,0:0,0,26,20 +chrX 4356126 . T A 2946 . AC=3;AF=1.00;AN=3;AS_AltDP=92;AS_QD=32.35;DP=93;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.35;SOR=0.782;VarDP=92 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:951,0:0,0,16,14 1/1:0,62:62:99:2025,186,0:0,0,32,30 +chrX 4358278 . C CAA,CAAA 841.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=19,5;AS_QD=31.74,34.06;BaseQRankSum=1.374;DP=69;ExcessHet=0.0000;FS=0.000;MQ=57.52;MQRankSum=0;QD=33.88;ReadPosRankSum=-0.653;SOR=0.859;VarDP=26 GT:AD:DP:GQ:PL:SB 1:1,9,0:10:99:224,0,254:1,0,3,6 1/2:1,10,5:16:46:657,99,46,221,0,194:0,1,8,7 +chrX 4358552 . A G 436 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=10.84;BaseQRankSum=-2.064;DP=71;ExcessHet=0.0000;FS=2.600;MQ=60.00;MQRankSum=0;QD=10.84;ReadPosRankSum=0.332;SOR=0.387;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:26:99:26:0,506 0/1:25,18:43:99:.:466,0,738:10,15,9,9 +chrX 4359122 . C T 3301 . AC=3;AF=1.00;AN=3;AS_AltDP=100;AS_QD=33.31;DP=102;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.31;SOR=1.007;VarDP=100 GT:AD:DP:GQ:PL:SB 1:0,38:38:99:1281,0:0,0,22,16 1/1:0,62:62:99:2050,186,0:0,0,35,27 +chrX 4359413 . G A 2804 . AC=3;AF=1.00;AN=3;AS_AltDP=86;AS_QD=32.95;DP=89;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.95;SOR=0.839;VarDP=86 GT:AD:DP:GQ:PL:SB 1:0,37:37:99:1186,0:0,0,21,16 1/1:0,49:49:99:1648,147,0:0,0,25,24 +chrX 4360666 . A G 3196 . AC=3;AF=1.00;AN=3;AS_AltDP=100;AS_QD=31.94;BaseQRankSum=-0.544;DP=106;ExcessHet=0.0000;FS=3.231;MQ=60.00;MQRankSum=0;QD=31.94;ReadPosRankSum=-1.516;SOR=0.416;VarDP=101 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:988,0:0,0,11,18 1/1:1,71:72:99:2238,181,0:1,0,36,35 +chrX 4361849 . C T 3134 . AC=3;AF=1.00;AN=3;AS_AltDP=95;AS_QD=33.31;DP=96;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.31;SOR=0.714;VarDP=95 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:898,0:0,0,13,15 1/1:0,67:67:99:2266,202,0:0,0,34,33 +chrX 4367799 . C A 2978 . AC=3;AF=1.00;AN=3;AS_AltDP=95;AS_QD=31.66;DP=95;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.66;SOR=1.053;VarDP=95 GT:AD:DP:GQ:PL:SB 1:0,37:37:99:1149,0:0,0,18,19 1/1:0,58:58:99:1859,174,0:0,0,22,36 +chrX 4370019 . A G 2892 . AC=3;AF=1.00;AN=3;AS_AltDP=90;AS_QD=32.47;DP=92;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.47;SOR=0.990;VarDP=90 GT:AD:DP:GQ:PL:SB 1:0,47:47:99:1514,0:0,0,29,18 1/1:0,43:43:99:1408,129,0:0,0,22,21 +chrX 4370747 . A G 3208 . AC=3;AF=1.00;AN=3;AS_AltDP=100;AS_QD=32.38;DP=102;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.38;SOR=1.059;VarDP=100 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:1007,0:0,0,18,14 1/1:0,68:68:99:2231,204,0:0,0,40,28 +chrX 4376359 . A G 2059 . AC=3;AF=1.00;AN=3;AS_AltDP=64;AS_QD=32.64;DP=70;ExcessHet=0.0000;FS=0.000;MQ=59.81;QD=32.64;SOR=0.693;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:829,0:0,0,12,13 1/1:0,39:39:99:1260,117,0:0,0,20,19 +chrX 4376455 . A G 2678 . AC=3;AF=1.00;AN=3;AS_AltDP=84;AS_QD=32.24;DP=84;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.24;SOR=0.843;VarDP=84 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:868,0:0,0,13,14 1/1:0,57:57:99:1840,170,0:0,0,32,25 +chrX 4376517 . A G 2200 . AC=3;AF=1.00;AN=3;AS_AltDP=70;AS_QD=31.86;DP=74;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.86;SOR=0.750;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,16:16:99:501,0:0,0,6,10 1/1:0,54:54:99:1729,162,0:0,0,30,24 +chrX 4377694 . TTAAGA T 3803.97 . AC=3;AF=1.00;AN=3;AS_AltDP=87;AS_QD=29.74;BaseQRankSum=-0.59;DP=90;ExcessHet=0.0000;FS=3.317;MQ=60.00;MQRankSum=0;QD=43.67;ReadPosRankSum=1.576;SOR=0.483;VarDP=88 GT:AD:DP:GQ:PL:SB 1:1,32:33:99:1382,0:1,0,12,20 1/1:0,55:55:99:2461,166,0:0,0,28,27 +chrX 4380230 . G T 2689 . AC=3;AF=1.00;AN=3;AS_AltDP=83;AS_QD=32.37;BaseQRankSum=2.42;DP=90;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=32.37;ReadPosRankSum=-1.662;SOR=0.261;VarDP=84 GT:AD:DP:GQ:PL:SB 1:0,35:35:99:1171,0:0,0,18,17 1/1:1,48:49:99:1548,137,0:0,1,24,24 +chrX 4381040 . A G 2911 . AC=3;AF=1.00;AN=3;AS_AltDP=92;AS_QD=31.97;DP=93;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.97;SOR=0.878;VarDP=92 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:978,0:0,0,16,14 1/1:0,62:62:99:1963,185,0:0,0,34,28 +chrX 4381478 . A C 2645 . AC=3;AF=1.00;AN=3;AS_AltDP=79;AS_QD=33.86;DP=79;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.86;SOR=1.207;VarDP=79 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:853,0:0,0,9,17 1/1:0,53:53:99:1822,159,0:0,0,22,31 +chrX 4381622 . A G 2645 . AC=3;AF=1.00;AN=3;AS_AltDP=83;AS_QD=32.23;DP=88;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.23;SOR=0.717;VarDP=83 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:893,0:0,0,17,11 1/1:0,55:55:99:1782,165,0:0,0,25,30 +chrX 4383022 . CTTTTTTTTTTTT C 1167.97 . AC=2;AF=0.667;AN=3;AS_AltDP=30;AS_QD=31.55;BaseQRankSum=-1.212;DP=76;ExcessHet=0.0000;FS=18.120;MQ=59.53;MQRankSum=1.328;QD=35.50;ReadPosRankSum=0.041;SOR=1.585;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,11:11:99:487,0:0,0,4,7 0/1:4,19:23:0:720,0,0:4,0,5,14 +chrX 4383868 . C A 538 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=12.91;BaseQRankSum=0.302;DP=64;ExcessHet=0.0000;FS=6.095;MQ=60.00;MQRankSum=0;QD=12.91;ReadPosRankSum=-0.423;SOR=1.111;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:19:20:18:0,20 0/1:23,21:44:99:.:568,0,602:10,13,13,8 +chrX 4387103 . T A 2608 . AC=3;AF=1.00;AN=3;AS_AltDP=86;AS_QD=30.67;DP=88;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.67;SOR=1.127;VarDP=86 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:713,0:0,0,7,16 1/1:0,63:63:99:1925,188,0:0,0,28,35 +chrX 4387485 . CA C 1950.97 . AC=3;AF=1.00;AN=3;AS_AltDP=77;AS_QD=25.51;DP=90;ExcessHet=0.0000;FS=4.007;MQ=60.00;MQRankSum=0;QD=25.51;SOR=0.974;VarDP=78 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:855,0:0,0,18,15 1/1:1,44:45:99:1135,113,0:0,1,29,15 +chrX 4388206 . G A 2832 . AC=3;AF=1.00;AN=3;AS_AltDP=90;AS_QD=31.80;DP=94;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.80;SOR=0.784;VarDP=90 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:1012,0:0,0,15,16 1/1:0,59:59:99:1850,176,0:0,0,32,27 +chrX 4389716 . G A 1919 . AC=3;AF=1.00;AN=3;AS_AltDP=61;AS_QD=31.95;DP=72;ExcessHet=0.0000;FS=0.000;MQ=59.35;QD=31.95;SOR=0.941;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:696,0:0,0,9,14 1/1:0,38:38:99:1253,112,0:0,0,18,20 +chrX 4390490 . T C 2156 . AC=3;AF=1.00;AN=3;AS_AltDP=71;AS_QD=30.79;DP=76;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.79;SOR=0.840;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,39:39:99:1170,0:0,0,19,20 1/1:0,32:32:96:1016,96,0:0,0,14,18 +chrX 4390782 . G GATATAT,GATATATAT 221.97 . AC=1,0;AF=0.333,0.00;AN=3;AS_AltDP=4,0;AS_QD=33.50,30.37;DP=38;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=65.25;SOR=3.258;VarDP=4 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,4,0:4:99:.:261,0,136:0,0,0,4 0/0:.:27:39:23:0,39,569,39,569,569 +chrX 4390820 . TATATAC T 119.97 . AC=1;AF=0.333;AN=3;AS_AltDP=6;AS_QD=11.36;BaseQRankSum=0.566;DP=38;ExcessHet=0.0000;FS=10.710;MQ=59.41;MQRankSum=0.152;QD=11.36;ReadPosRankSum=1.204;SOR=3.912;VarDP=14 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:14:35:13:0,35 0/1:8,6:14:99:.:159,0,224:4,4,0,6 +chrX 4390824 . TAC *,T 464.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=6,4;AS_QD=0.00,30.16;DP=38;ExcessHet=0.0000;FS=0.000;MQ=59.41;QD=50.40;SOR=3.258;VarDP=10 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:14:35:13:0,35,35 1/2:0,6,4:10:91:.:504,91,221,211,0,209:0,0,1,9 +chrX 4390826 . C T,* 278 . AC=1,2;AF=0.333,0.667;AN=3;AS_AltDP=10,0;AS_QD=30.80,26.10;DP=38;ExcessHet=0.0000;FS=0.000;MQ=58.87;QD=30.80;SOR=3.912;VarDP=10 GT:AD:DP:GQ:PL:SB 1:0,10,0:10:99:308,0,288:0,0,0,4 2/2:0,0,4:10:2:504,421,490,211,242,209:0,0,1,9 +chrX 4392582 . C CAA,CAAA 1106.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=21,7;AS_QD=34.59,25.71;DP=67;ExcessHet=0.0000;FS=0.000;MQ=58.57;QD=40.93;SOR=1.609;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,17,0:17:99:406,0,407:0,0,6,11 1/2:0,4,7:11:45:740,178,101,121,0,45:0,0,3,8 +chrX 4393753 . G T 3118 . AC=3;AF=1.00;AN=3;AS_AltDP=99;AS_QD=31.80;DP=100;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.80;SOR=0.713;VarDP=99 GT:AD:DP:GQ:PL:SB 1:0,38:38:99:1184,0:0,0,20,18 1/1:0,61:61:99:1964,183,0:0,0,29,32 +chrX 4396140 . C CTG 3886.97 . AC=3;AF=1.00;AN=3;AS_AltDP=89;AS_QD=31.31;DP=97;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.11;SOR=1.141;VarDP=89 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:1259,0:0,0,15,13 1/1:0,61:61:99:2667,183,0:0,0,21,40 +chrX 4398508 . A G 2882 . AC=3;AF=1.00;AN=3;AS_AltDP=94;AS_QD=30.65;BaseQRankSum=-0.533;DP=97;ExcessHet=0.0000;FS=3.757;MQ=60.00;MQRankSum=0;QD=30.65;ReadPosRankSum=-0.918;SOR=0.793;VarDP=95 GT:AD:DP:GQ:PL:SB 1:1,33:34:99:1022,0:0,1,17,16 1/1:0,61:61:99:1890,183,0:0,0,38,23 +chrX 4402447 . G C 2231 . AC=3;AF=1.00;AN=3;AS_AltDP=73;AS_QD=30.97;DP=75;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.97;SOR=0.836;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:753,0:0,0,14,11 1/1:0,48:48:99:1508,144,0:0,0,25,23 +chrX 4402603 . A T,ATT 526 . AC=2,0;AF=0.667,0.00;AN=3;AS_AltDP=16,4;AS_QD=24.17,6.91;BaseQRankSum=-0.886;DP=50;ExcessHet=0.0000;FS=14.075;MQ=56.62;MQRankSum=-0.827;QD=20.59;ReadPosRankSum=1.134;SOR=0.749;VarDP=27 GT:AD:DP:GQ:PL:SB 1:0,9,0:9:99:391,0,392:0,0,4,5 0/1:7,7,4:18:89:165,0,329,89,96,257:0,5,8,3 +chrX 4402605 . A T 1030 . AC=3;AF=1.00;AN=3;AS_AltDP=26;AS_QD=21.41;BaseQRankSum=0;DP=51;ExcessHet=0.0000;FS=0.000;MQ=56.69;MQRankSum=-0.488;QD=39.26;ReadPosRankSum=1.737;SOR=0.223;VarDP=27 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,9:9:99:.:.:391,0:.:0,0,4,5 1|1:1,17:18:49:0|1:4402605_A_T:669,49,0:4402605:0,1,9,8 +chrX 4402607 . A T 1030 . AC=3;AF=1.00;AN=3;AS_AltDP=26;AS_QD=30.80;BaseQRankSum=0;DP=49;ExcessHet=0.0000;FS=0.000;MQ=56.55;MQRankSum=-0.488;QD=39.26;ReadPosRankSum=1.739;SOR=0.223;VarDP=27 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,9:9:99:.:.:391,0:.:0,0,4,5 1|1:1,17:18:49:0|1:4402605_A_T:669,49,0:4402605:0,1,9,8 +chrX 4402609 . A T,ATTTTTTTT,ATTTTTT 1806 . AC=3,0,0;AF=1.00,0.00,0.00;AN=3;AS_AltDP=26,0,0;AS_QD=28.40,28.40,31.86;DP=48;ExcessHet=0.0000;FS=0.000;MQ=56.47;QD=70.62;SOR=0.693;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,9,0,0:9:99:626,0,485,556:0,0,4,5 1/1:0,17,0,0:17:68:1210,79,0,820,68,953,855,74,881,987:0,0,9,8 +chrX 4403737 . C T 3320 . AC=3;AF=1.00;AN=3;AS_AltDP=100;AS_QD=33.50;DP=103;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.50;SOR=1.345;VarDP=100 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:849,0:0,0,7,18 1/1:0,75:75:99:2501,225,0:0,0,30,45 +chrX 4404552 . T C 2689 . AC=3;AF=1.00;AN=3;AS_AltDP=83;AS_QD=32.76;DP=90;ExcessHet=0.0000;FS=0.000;MQ=59.81;QD=32.76;SOR=0.717;VarDP=83 GT:AD:DP:GQ:PL:SB 1:0,34:34:99:1077,0:0,0,18,16 1/1:0,49:49:99:1642,147,0:0,0,23,26 +chrX 4404978 . T C 886 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=30.53;DP=80;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.53;SOR=0.826;VarDP=30 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,30:30:99:.:916,0:0,0,16,14 0/0:.:49:68:49:0,68,1087 +chrX 4406492 . TGATAGATAGATA T,TGATAGATA 2350.97 . AC=1,2;AF=0.333,0.667;AN=3;AS_AltDP=25,29;AS_QD=27.73,27.04;DP=70;ExcessHet=0.0000;FS=0.000;MQ=59.79;QD=44.26;SOR=0.931;VarDP=54 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:1106,0,1106:0,0,12,13 2/2:0,0,29:29:88:1284,1284,1284,88,88,0:0,0,12,17 +chrX 4407122 . G A 2864 . AC=3;AF=1.00;AN=3;AS_AltDP=87;AS_QD=33.26;DP=89;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.26;SOR=0.972;VarDP=87 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:878,0:0,0,13,14 1/1:0,60:60:99:2016,180,0:0,0,25,35 +chrX 4408062 . C G 675 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=12.16;BaseQRankSum=1.109;DP=88;ExcessHet=0.0000;FS=3.683;MQ=60.00;MQRankSum=0;QD=12.16;ReadPosRankSum=0.266;SOR=0.600;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,582 0/1:32,26:58:99:.:705,0,898:13,19,14,12 +chrX 4410243 . G C 2387 . AC=3;AF=1.00;AN=3;AS_AltDP=80;AS_QD=29.84;BaseQRankSum=1.347;DP=84;ExcessHet=0.0000;FS=0.000;MQ=59.79;MQRankSum=0;QD=29.84;ReadPosRankSum=0.712;SOR=0.289;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:742,0:0,0,12,13 1/1:1,55:56:99:1675,143,0:0,1,25,30 +chrX 4410618 . A G 673 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=33.48;DP=60;ExcessHet=0.0000;FS=0.000;MQ=59.37;QD=33.48;SOR=1.508;VarDP=21 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,21:21:99:.:703,0:0,0,14,7 0/0:.:54:20:38:0,20,1031 +chrX 4411286 . C T 2571 . AC=3;AF=1.00;AN=3;AS_AltDP=79;AS_QD=32.92;DP=82;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.92;SOR=0.881;VarDP=79 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:854,0:0,0,14,12 1/1:0,53:53:99:1747,159,0:0,0,29,24 +chrX 4411795 . A ATT 815.97 . AC=2;AF=0.667;AN=3;AS_AltDP=34;AS_QD=25.15;DP=87;ExcessHet=0.0000;FS=0.000;MQ=59.19;QD=25.15;SOR=0.693;VarDP=34 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:99:28:0,278 1/1:0,34:34:99:.:855,101,0:0,0,17,17 +chrX 4412743 . C G 233 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=5.48;BaseQRankSum=-1.003;DP=76;ExcessHet=0.0000;FS=1.258;MQ=60.00;MQRankSum=0;QD=5.48;ReadPosRankSum=1.567;SOR=0.707;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:99:28:0,278 0/1:35,13:48:99:.:263,0,1018:16,19,7,6 +chrX 4415303 . CA C 1484.97 . AC=3;AF=1.00;AN=3;AS_AltDP=60;AS_QD=24.98;BaseQRankSum=-0.659;DP=84;ExcessHet=0.0000;FS=0.000;MQ=59.46;MQRankSum=0;QD=24.98;ReadPosRankSum=-0.888;SOR=0.314;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,20:20:99:518,0:0,0,10,10 1/1:1,40:41:99:1006,99,0:0,1,17,23 +chrX 4416778 . T G 2409 . AC=3;AF=1.00;AN=3;AS_AltDP=75;AS_QD=32.52;DP=76;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.52;SOR=1.319;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:912,0:0,0,12,17 1/1:0,46:46:99:1527,138,0:0,0,16,30 +chrX 4420125 . A G 1889 . AC=3;AF=1.00;AN=3;AS_AltDP=61;AS_QD=30.95;BaseQRankSum=-0.162;DP=64;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=30.95;ReadPosRankSum=0.248;SOR=0.563;VarDP=62 GT:AD:DP:GQ:PL:SB 1:1,20:21:99:624,0:1,0,14,6 1/1:0,41:41:99:1295,123,0:0,0,25,16 +chrX 4420966 . A C 2484 . AC=3;AF=1.00;AN=3;AS_AltDP=75;AS_QD=33.52;DP=76;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.52;SOR=0.832;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,19:19:99:613,0:0,0,12,7 1/1:0,56:56:99:1901,168,0:0,0,28,28 +chrX 4423418 . G A 2337 . AC=3;AF=1.00;AN=3;AS_AltDP=73;AS_QD=32.42;DP=75;ExcessHet=0.0000;FS=0.000;MQ=59.68;QD=32.42;SOR=0.963;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:804,0:0,0,7,17 1/1:0,49:49:99:1563,146,0:0,0,25,24 +chrX 4428655 . C CTCTTA 3053.97 . AC=3;AF=1.00;AN=3;AS_AltDP=69;AS_QD=31.73;DP=71;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.83;SOR=0.980;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:1080,0:0,0,8,16 1/1:0,45:45:99:2013,135,0:0,0,22,23 +chrX 4430001 . T C 2595 . AC=3;AF=1.00;AN=3;AS_AltDP=80;AS_QD=32.81;DP=83;ExcessHet=0.0000;FS=0.000;MQ=59.78;QD=32.81;SOR=0.908;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:903,0:0,0,10,18 1/1:0,52:52:99:1722,156,0:0,0,26,26 +chrX 4431514 . G T 2980 . AC=3;AF=1.00;AN=3;AS_AltDP=92;AS_QD=32.72;DP=94;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.72;SOR=0.982;VarDP=92 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:973,0:0,0,16,14 1/1:0,62:62:99:2037,186,0:0,0,36,26 +chrX 4433571 . G A 3022 . AC=3;AF=1.00;AN=3;AS_AltDP=94;AS_QD=32.47;DP=97;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.47;SOR=0.874;VarDP=94 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:1077,0:0,0,18,15 1/1:0,61:61:99:1975,183,0:0,0,25,36 +chrX 4435170 . G GCA 625.97 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=16.22;BaseQRankSum=0.723;DP=82;ExcessHet=0.0000;FS=1.202;MQ=60.00;MQRankSum=0;QD=16.22;ReadPosRankSum=-1.918;SOR=0.963;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,456 0/1:18,23:41:99:.:665,0,485:9,9,13,10 +chrX 4438199 . AT A 1995.97 . AC=3;AF=1.00;AN=3;AS_AltDP=68;AS_QD=29.93;DP=75;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=29.93;SOR=0.693;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,16:16:99:474,0:0,0,10,6 1/1:0,52:52:99:1561,156,0:0,0,24,28 +chrX 4442668 . TAC T 1622.97 . AC=3;AF=1.00;AN=3;AS_AltDP=49;AS_QD=33.24;BaseQRankSum=-0.319;DP=62;ExcessHet=0.0000;FS=5.850;MQ=59.83;MQRankSum=0;QD=33.24;ReadPosRankSum=0.602;SOR=2.174;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:851,0:0,0,4,20 1/1:1,25:26:68:811,68,0:1,0,8,17 +chrX 4443309 . G GTA 1827.97 . AC=3;AF=1.00;AN=3;AS_AltDP=48;AS_QD=25.54;DP=71;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=38.90;SOR=0.866;VarDP=48 GT:AD:DP:GQ:PL:SB 1:0,20:20:99:771,0:0,0,8,12 1/1:0,28:28:84:1096,84,0:0,0,14,14 +chrX 4443931 . A G 1819 . AC=3;AF=1.00;AN=3;AS_AltDP=62;AS_QD=29.82;DP=64;ExcessHet=0.0000;FS=0.000;MQ=59.44;QD=29.82;SOR=0.899;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:722,0:0,0,10,14 1/1:0,38:38:99:1127,113,0:0,0,24,14 +chrX 4444660 . A G 2575 . AC=3;AF=1.00;AN=3;AS_AltDP=82;AS_QD=31.77;DP=82;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.77;SOR=0.846;VarDP=82 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:824,0:0,0,16,10 1/1:0,56:56:99:1781,167,0:0,0,22,34 +chrX 4446527 . G A 2656 . AC=3;AF=1.00;AN=3;AS_AltDP=80;AS_QD=33.58;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.58;SOR=0.850;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,34:34:99:1127,0:0,0,19,15 1/1:0,46:46:99:1559,138,0:0,0,24,22 +chrX 4448051 . A G 2342 . AC=3;AF=1.00;AN=3;AS_AltDP=73;AS_QD=32.49;DP=74;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.49;SOR=0.898;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:908,0:0,0,9,19 1/1:0,45:45:99:1464,135,0:0,0,24,21 +chrX 4448277 . G T 681 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=12.70;BaseQRankSum=-0.565;DP=90;ExcessHet=0.0000;FS=1.029;MQ=60.00;MQRankSum=0;QD=12.70;ReadPosRankSum=-0.475;SOR=0.997;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:33:99:33:0,700 0/1:28,28:56:99:.:711,0,730:14,14,12,16 +chrX 4449047 . ATT A 696.97 . AC=2;AF=0.667;AN=3;AS_AltDP=28;AS_QD=22.30;BaseQRankSum=-1.284;DP=78;ExcessHet=0.0000;FS=20.739;MQ=58.75;MQRankSum=1.022;QD=22.30;ReadPosRankSum=0.47;SOR=1.393;VarDP=33 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,11:11:99:.:.:330,0:.:0,0,5,6 0|1:5,17:22:43:0|1:4449047_ATT_A:406,0,43:4449047:5,0,4,13 +chrX 4450142 . A T 2460 . AC=3;AF=1.00;AN=3;AS_AltDP=74;AS_QD=33.65;DP=75;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.65;SOR=1.061;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:1017,0:0,0,16,15 1/1:0,43:43:99:1473,129,0:0,0,27,16 +chrX 4451537 . A G 1952 . AC=3;AF=1.00;AN=3;AS_AltDP=62;AS_QD=31.97;DP=64;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.97;SOR=0.899;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:822,0:0,0,10,16 1/1:0,36:36:99:1160,108,0:0,0,18,18 +chrX 4451749 . A G 2849 . AC=3;AF=1.00;AN=3;AS_AltDP=88;AS_QD=32.72;DP=91;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.72;SOR=0.887;VarDP=88 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:854,0:0,0,14,12 1/1:0,62:62:99:2025,186,0:0,0,34,28 +chrX 4452013 . A G 2881 . AC=3;AF=1.00;AN=3;AS_AltDP=92;AS_QD=31.64;DP=94;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.64;SOR=1.038;VarDP=92 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:982,0:0,0,18,13 1/1:0,61:61:99:1929,182,0:0,0,35,26 +chrX 4452355 . A T 2351 . AC=3;AF=1.00;AN=3;AS_AltDP=74;AS_QD=32.18;DP=80;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.18;SOR=0.747;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:913,0:0,0,16,12 1/1:0,46:46:99:1468,137,0:0,0,22,24 +chrX 4452720 . G A 3390 . AC=3;AF=1.00;AN=3;AS_AltDP=103;AS_QD=33.20;DP=105;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.20;SOR=0.836;VarDP=103 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:1067,0:0,0,18,15 1/1:0,70:70:99:2353,211,0:0,0,37,33 +chrX 4453906 . T C 2327 . AC=3;AF=1.00;AN=3;AS_AltDP=72;AS_QD=32.74;DP=74;ExcessHet=0.0000;FS=0.000;MQ=59.85;QD=32.74;SOR=1.483;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,21:21:99:670,0:0,0,9,12 1/1:0,51:51:99:1687,153,0:0,0,16,35 +chrX 4453952 . A G 673 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=14.65;BaseQRankSum=-2.262;DP=71;ExcessHet=0.0000;FS=1.129;MQ=60.00;MQRankSum=0;QD=14.65;ReadPosRankSum=2.09;SOR=0.988;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:21:99:21:0,551 0/1:21,27:48:99:.:703,0,584:10,11,11,16 +chrX 4453955 . G A,GA 1662 . AC=0,3;AF=0.00,1.00;AN=3;AS_AltDP=0,59;AS_QD=27.32,28.68;DP=73;ExcessHet=0.0000;FS=0.000;MQ=59.91;QD=28.68;SOR=1.034;VarDP=59 GT:AD:DP:GQ:PL:SB 2:0,0,16:16:99:479,640,0:0,0,6,10 2/2:0,0,43:43:99:1213,1213,1213,129,129,0:0,0,19,24 +chrX 4455938 . T TAAAAAAA 1112.97 . AC=2;AF=0.667;AN=3;AS_AltDP=28;AS_QD=34.91;BaseQRankSum=0.444;DP=54;ExcessHet=0.0000;FS=18.978;MQ=57.37;MQRankSum=-0.919;QD=34.91;ReadPosRankSum=-3.173;SOR=1.102;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,11:11:99:476,0:0,0,5,6 0/1:5,17:22:40:676,0,40:5,0,5,12 +chrX 4455979 . A C 1460 . AC=3;AF=1.00;AN=3;AS_AltDP=50;AS_QD=26.61;BaseQRankSum=3.072;DP=60;ExcessHet=0.0000;FS=14.292;MQ=57.99;MQRankSum=0.842;QD=26.61;ReadPosRankSum=0.214;SOR=0.027;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,17:17:99:571,0:0,0,10,7 1/1:6,33:39:6:919,6,0:6,0,17,16 +chrX 4458394 . G A 2247 . AC=3;AF=1.00;AN=3;AS_AltDP=70;AS_QD=32.53;DP=72;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.53;SOR=0.811;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:893,0:0,0,14,12 1/1:0,44:44:99:1384,132,0:0,0,23,21 +chrX 4461913 . GAAGTCATTGTACAAGGAAAACATTCTGTATGCACTAAGATTTCCCAAAAGAT G 3009.97 . AC=3;AF=1.00;AN=3;AS_AltDP=68;AS_QD=29.75;DP=75;ExcessHet=0.0000;FS=0.000;MQ=59.72;QD=44.84;SOR=0.880;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,18:18:99:794,0:0,0,11,7 1/1:0,50:50:99:2255,153,0:0,0,26,24 +chrX 4462789 . AAAAC A 3203.97 . AC=3;AF=1.00;AN=3;AS_AltDP=74;AS_QD=29.44;DP=91;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.82;SOR=1.209;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:1105,0:0,0,11,14 1/1:0,49:49:99:2138,148,0:0,0,18,31 +chrX 4464620 . G A 3273 . AC=3;AF=1.00;AN=3;AS_AltDP=100;AS_QD=33.03;DP=100;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.03;SOR=0.957;VarDP=100 GT:AD:DP:GQ:PL:SB 1:0,36:36:99:1190,0:0,0,16,20 1/1:0,64:64:99:2113,192,0:0,0,28,36 +chrX 4464853 . A C 2608 . AC=3;AF=1.00;AN=3;AS_AltDP=80;AS_QD=32.98;DP=81;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.98;SOR=0.743;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:794,0:0,0,12,12 1/1:0,56:56:99:1844,168,0:0,0,29,27 +chrX 4465139 . A AAAAG,AAAAGAAAGAAAGAAAG 1182.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=15,13;AS_QD=30.62,28.20;BaseQRankSum=0;DP=81;ExcessHet=0.0000;FS=0.000;MQ=58.05;MQRankSum=1.291;QD=42.14;ReadPosRankSum=-0.179;SOR=0.693;VarDP=29 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,425,425 1/2:1,15,13:29:99:.:1222,524,498,553,0,520:1,0,19,9 +chrX 4465393 . AAAAGAAAG A,AAAAG 1464.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=28,8;AS_QD=29.93,28.40;DP=67;ExcessHet=0.0000;FS=0.000;MQ=59.77;QD=41.78;SOR=0.927;VarDP=36 GT:AD:DP:GQ:PL:SB 1:0,9,0:9:99:396,0,396:0,0,5,4 1/2:0,19,8:27:99:1108,337,335,774,0,757:0,0,15,12 +chrX 4466655 . A G 1851 . AC=3;AF=1.00;AN=3;AS_AltDP=56;AS_QD=33.59;DP=58;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.59;SOR=1.009;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:928,0:0,0,17,10 1/1:0,29:29:87:953,87,0:0,0,15,14 +chrX 4467928 . G T 2318 . AC=3;AF=1.00;AN=3;AS_AltDP=72;AS_QD=32.16;BaseQRankSum=2.006;DP=77;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=32.16;ReadPosRankSum=0.158;SOR=0.430;VarDP=73 GT:AD:DP:GQ:PL:SB 1:1,21:22:99:640,0:1,0,15,6 1/1:0,51:51:99:1708,153,0:0,0,28,23 +chrX 4468135 . T C 1851 . AC=3;AF=1.00;AN=3;AS_AltDP=58;AS_QD=32.43;DP=59;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.43;SOR=0.836;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,21:21:99:695,0:0,0,12,9 1/1:0,37:37:99:1186,110,0:0,0,15,22 +chrX 4468703 . G GTATA,GTA 297.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=7,4;AS_QD=30.56,22.50;BaseQRankSum=-0.921;DP=39;ExcessHet=0.0000;FS=3.123;MQ=60.00;MQRankSum=0;QD=25.92;ReadPosRankSum=-0.619;SOR=0.141;VarDP=13 GT:AD:DP:GQ:PL:SB 1:0,5,0:5:99:202,0,202:0,0,3,2 0/2:2,2,4:8:20:135,62,137,0,20,29:2,0,3,3 +chrX 4470539 . G T 2809 . AC=3;AF=1.00;AN=3;AS_AltDP=90;AS_QD=30.86;BaseQRankSum=1.262;DP=93;ExcessHet=0.0000;FS=7.080;MQ=60.00;MQRankSum=0;QD=30.86;ReadPosRankSum=1.102;SOR=0.588;VarDP=92 GT:AD:DP:GQ:PL:SB 1:2,33:35:99:1018,0:2,0,12,21 1/1:0,57:57:99:1821,170,0:0,0,27,30 +chrX 4471606 . A AAGAAAGAAAGAAAGAC,AAGAAAGAAAGAC 2482.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=39,10;AS_QD=30.14,33.81;DP=74;ExcessHet=0.0000;FS=0.000;MQ=57.95;QD=51.47;SOR=1.112;VarDP=49 GT:AD:DP:GQ:PL:SB 1:0,20,0:20:99:867,0,868:0,0,14,6 1/2:0,19,10:29:99:1655,446,355,778,0,700:0,0,15,14 +chrX 4473087 . T C 2559 . AC=3;AF=1.00;AN=3;AS_AltDP=80;AS_QD=31.96;BaseQRankSum=-0.368;DP=85;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=31.96;ReadPosRankSum=1.374;SOR=0.315;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:911,0:0,0,15,13 1/1:1,52:53:99:1678,124,0:1,0,29,23 +chrX 4478258 . A AAGG 876.97 . AC=2;AF=0.667;AN=3;AS_AltDP=23;AS_QD=27.76;BaseQRankSum=-1.866;DP=37;ExcessHet=0.0000;FS=3.666;MQ=60.00;MQRankSum=0;QD=27.76;ReadPosRankSum=1.022;SOR=0.223;VarDP=33 GT:AD:DP:GQ:PL:SB 1:0,13:13:99:568,0:0,0,9,4 0/1:10,10:20:99:348,0,364:8,2,5,5 +chrX 4478293 . GGAAA G 533.97 . AC=3;AF=1.00;AN=3;AS_AltDP=13;AS_QD=29.42;DP=37;ExcessHet=0.0000;FS=0.000;MQ=59.30;QD=44.08;SOR=2.833;VarDP=13 GT:AD:DP:GQ:PL:SB 1:0,3:3:99:135,0:0,0,3,0 1/1:0,10:10:31:438,31,0:0,0,8,2 +chrX 4479298 . C CT 898.97 . AC=2;AF=0.667;AN=3;AS_AltDP=45;AS_QD=14.21;BaseQRankSum=-0.246;DP=82;ExcessHet=0.0000;FS=1.028;MQ=60.00;MQRankSum=0;QD=14.21;ReadPosRankSum=1.044;SOR=0.553;VarDP=66 GT:AD:DP:GQ:PL:SB 1:1,24:25:99:548,0:0,1,17,7 0/1:20,21:41:99:390,0,394:14,6,11,10 +chrX 4479951 . G GA,A 685 . AC=2,0;AF=0.667,0.00;AN=3;AS_AltDP=34,3;AS_QD=15.89,3.29;BaseQRankSum=1.843;DP=62;ExcessHet=0.0000;FS=5.079;MQ=59.28;MQRankSum=0;QD=14.90;ReadPosRankSum=0.751;SOR=0.725;VarDP=48 GT:AD:DP:GQ:PL:SB 1:1,22,0:23:99:488,0,494:0,1,11,11 0/1:10,12,3:25:99:227,0,177,181,202,668:7,3,5,10 +chrX 4480922 . T C 1811 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=21.66;BaseQRankSum=-1.077;DP=87;ExcessHet=0.0000;FS=2.065;MQ=60.00;MQRankSum=0;QD=21.66;ReadPosRankSum=-1.337;SOR=0.433;VarDP=85 GT:AD:DP:GQ:PL:SB 1:0,36:36:99:1136,0:0,0,18,18 0/1:22,27:49:99:705,0,588:13,9,14,13 +chrX 4484103 . A C 1168 . AC=2;AF=0.667;AN=3;AS_AltDP=45;AS_QD=18.15;BaseQRankSum=-0.629;DP=73;ExcessHet=0.0000;FS=2.511;MQ=60.00;MQRankSum=0;QD=18.15;ReadPosRankSum=0.653;SOR=0.358;VarDP=66 GT:AD:DP:GQ:PL:SB 1:1,22:23:99:613,0:1,0,9,6 0/1:20,23:43:99:585,0,556:5,13,6,14 +chrX 4490270 . C T 591 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=12.94;BaseQRankSum=0.737;DP=81;ExcessHet=0.0000;FS=5.864;MQ=60.00;MQRankSum=0;QD=12.94;ReadPosRankSum=1.735;SOR=1.392;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,444 0/1:25,23:48:99:.:621,0,670:13,12,8,15 +chrX 4492348 . T C 881 . AC=2;AF=0.667;AN=3;AS_AltDP=32;AS_QD=14.46;BaseQRankSum=-0.155;DP=66;ExcessHet=0.0000;FS=19.289;MQ=59.67;MQRankSum=0;QD=14.46;ReadPosRankSum=1.067;SOR=1.284;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,16:16:99:526,0:0,0,5,11 0/1:31,16:47:99:385,0,871:21,10,6,10 +chrX 4497325 . C T 1961 . AC=2;AF=0.667;AN=3;AS_AltDP=66;AS_QD=21.41;BaseQRankSum=0.158;DP=98;ExcessHet=0.0000;FS=11.590;MQ=60.00;MQRankSum=0;QD=21.41;ReadPosRankSum=0.483;SOR=1.134;VarDP=93 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:1107,0:0,0,12,21 0/1:27,33:60:99:884,0,688:16,11,13,20 +chrX 4497659 . C A 2775 . AC=3;AF=1.00;AN=3;AS_AltDP=73;AS_QD=29.20;DP=77;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=38.42;SOR=1.179;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:1193,0:0,0,17,11 1/1:0,45:45:99:1612,135,0:0,0,27,18 +chrX 4497682 . C T 1594 . AC=2;AF=0.667;AN=3;AS_AltDP=45;AS_QD=22.56;BaseQRankSum=2.008;DP=73;ExcessHet=0.0000;FS=2.038;MQ=60.00;MQRankSum=0;QD=22.56;ReadPosRankSum=-0.893;SOR=0.998;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:1114,0:0,0,16,9 0/1:27,20:47:99:510,0,663:15,12,12,8 +chrX 4497747 . AT A 333.97 . AC=2;AF=0.667;AN=3;AS_AltDP=22;AS_QD=9.10;BaseQRankSum=-0.057;DP=59;ExcessHet=0.0000;FS=1.204;MQ=60.00;MQRankSum=0;QD=9.10;ReadPosRankSum=0.337;SOR=0.799;VarDP=41 GT:AD:DP:GQ:PL:SB 1:1,11:12:99:220,0:1,0,6,5 0/1:18,11:29:99:153,0,310:8,10,6,5 +chrX 4500488 . CA C,CAA,CAAA,CAAAAA 314.97 . AC=1,0,0,1;AF=0.333,0.00,0.00,0.333;AN=3;AS_AltDP=7,6,0,6;AS_QD=4.40,8.89,11.54,14.00;BaseQRankSum=-0.282;DP=62;ExcessHet=0.0000;FS=0.000;MQ=59.91;MQRankSum=0;QD=11.06;ReadPosRankSum=0.812;SOR=0.859;VarDP=32 GT:AD:DP:GQ:PL:SB 1:3,7,0,0,0:10:88:88,0,125,125,125:0,3,6,1 0/4:10,0,6,0,6:22:54:266,203,421,97,256,213,116,353,186,349,0,252,54,247,418:7,3,5,7 +chrX 4501066 . G A 906 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=16.42;BaseQRankSum=1.608;DP=88;ExcessHet=0.0000;FS=9.378;MQ=60.00;MQRankSum=0;QD=16.42;ReadPosRankSum=2.474;SOR=1.224;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,561 0/1:24,33:57:99:.:936,0,593:10,14,21,12 +chrX 4501665 . A G 1786 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=22.42;BaseQRankSum=-0.411;DP=83;ExcessHet=0.0000;FS=1.002;MQ=60.00;MQRankSum=0;QD=22.42;ReadPosRankSum=-1.343;SOR=0.957;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:1011,0:0,0,19,13 0/1:20,29:49:99:805,0,528:11,9,18,11 +chrX 4506917 . CTT C,TTT 213 . AC=1,0;AF=0.333,0.00;AN=3;AS_AltDP=10,2;AS_QD=11.05,0.00;BaseQRankSum=-0.234;DP=68;ExcessHet=0.0000;FS=6.569;MQ=59.83;MQRankSum=-0.917;QD=10.13;ReadPosRankSum=0.289;SOR=1.267;VarDP=24 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,174,174 0/1:12,10,2:24:99:.:243,0,349,311,289,1005:4,8,8,4 +chrX 4508723 . A G 1609 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=24.10;BaseQRankSum=1.306;DP=70;ExcessHet=0.0000;FS=1.156;MQ=60.00;MQRankSum=0;QD=24.10;ReadPosRankSum=1.487;SOR=0.455;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:783,0:0,0,18,6 0/1:15,29:44:99:856,0,359:10,5,13,16 +chrX 4508865 . G A 631 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=12.24;BaseQRankSum=-2.2;DP=85;ExcessHet=0.0000;FS=12.599;MQ=60.00;MQRankSum=0;QD=12.24;ReadPosRankSum=1.386;SOR=0.970;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,487 0/1:28,26:54:99:.:661,0,790:9,19,16,10 +chrX 4509341 . AT A 1059.97 . AC=2;AF=0.667;AN=3;AS_AltDP=44;AS_QD=23.89;BaseQRankSum=-0.449;DP=90;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=23.89;ReadPosRankSum=-1.024;SOR=0.784;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,487 1/1:2,44:46:86:.:1099,86,0:1,1,21,23 +chrX 4510502 . AAT A 1229.97 . AC=2;AF=0.667;AN=3;AS_AltDP=41;AS_QD=21.88;BaseQRankSum=0.296;DP=67;ExcessHet=0.0000;FS=5.850;MQ=59.91;MQRankSum=0;QD=21.88;ReadPosRankSum=1.194;SOR=0.899;VarDP=58 GT:AD:DP:GQ:PL:SB 1:1,23:24:99:752,0:1,0,14,9 0/1:16,18:34:99:517,0,419:6,10,10,8 +chrX 4511568 . T TA 695.97 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=22.97;DP=89;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=22.97;SOR=0.818;VarDP=32 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,32:32:99:.:735,0:0,0,17,15 0/0:.:53:74:53:0,74,1170 +chrX 4511821 . G A 1342 . AC=1;AF=0.333;AN=3;AS_AltDP=42;AS_QD=32.67;DP=98;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.67;SOR=0.788;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,42:42:99:.:1372,0:0,0,22,20 0/0:.:53:74:53:0,74,1170 +chrX 4513344 . AAAAAG A 406.97 . AC=2;AF=0.667;AN=3;AS_AltDP=19;AS_QD=12.39;BaseQRankSum=-0.452;DP=75;ExcessHet=0.0000;FS=4.925;MQ=59.74;MQRankSum=0;QD=12.39;ReadPosRankSum=0.785;SOR=0.229;VarDP=36 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,14:15:99:.:.:359,0:.:0,1,5,9 0|1:16,5:21:87:0|1:4513344_AAAAAG_A:87,0,590:4513344:5,11,4,1 +chrX 4514073 . G GAAGA 1263.97 . AC=2;AF=0.667;AN=3;AS_AltDP=32;AS_QD=27.72;BaseQRankSum=1.719;DP=54;ExcessHet=0.0000;FS=1.395;MQ=58.70;MQRankSum=-0.619;QD=27.72;ReadPosRankSum=0.131;SOR=0.435;VarDP=47 GT:AD:DP:GQ:PL:SB 1:0,18:18:99:789,0:0,0,12,6 0/1:15,14:29:99:514,0,515:12,3,11,3 +chrX 4514093 . G GAAGA,GAAGAAAGAAAGA 842.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=13,8;AS_QD=26.09,18.12;BaseQRankSum=0.949;DP=53;ExcessHet=0.0000;FS=2.062;MQ=58.68;MQRankSum=-0.722;QD=29.40;ReadPosRankSum=-0.564;SOR=1.429;VarDP=30 GT:AD:DP:GQ:PL:SB 1:0,13,0:13:99:574,0,575:0,0,11,2 0/2:9,0,8:17:99:308,336,715,0,379,355:7,2,7,1 +chrX 4514221 . G GAGGAAGGAAGGA,GAGGA 1372.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=18,11;AS_QD=35.03,32.56;DP=48;ExcessHet=0.0000;FS=0.000;MQ=58.77;QD=48.69;SOR=1.460;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,11,0:11:99:495,0,495:0,0,6,5 1/2:0,7,11:18:99:917,409,376,319,0,261:0,0,13,5 +chrX 4516998 . GCACA G 1063.97 . AC=2;AF=0.667;AN=3;AS_AltDP=28;AS_QD=22.98;BaseQRankSum=1.128;DP=68;ExcessHet=0.0000;FS=1.129;MQ=60.00;MQRankSum=0;QD=22.98;ReadPosRankSum=0.024;SOR=0.941;VarDP=48 GT:AD:DP:GQ:PL:SB 1:1,18:19:99:740,0:0,1,7,11 0/1:19,10:29:99:363,0,751:9,10,4,6 +chrX 4518009 . G C 712 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=13.49;BaseQRankSum=-1.165;DP=83;ExcessHet=0.0000;FS=3.749;MQ=60.00;MQRankSum=0;QD=13.49;ReadPosRankSum=0.042;SOR=1.138;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:27:99:27:0,491 0/1:27,28:55:99:.:742,0,754:14,13,11,17 +chrX 4518588 . G A 1908 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=21.78;BaseQRankSum=2.035;DP=93;ExcessHet=0.0000;FS=0.878;MQ=60.00;MQRankSum=0;QD=21.78;ReadPosRankSum=0.032;SOR=0.859;VarDP=89 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:1061,0:0,0,17,15 0/1:26,31:57:99:877,0,637:13,13,17,14 +chrX 4521356 . AAGATAGATAGAT A 1133.97 . AC=2;AF=0.667;AN=3;AS_AltDP=33;AS_QD=24.96;BaseQRankSum=0;DP=67;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=24.96;ReadPosRankSum=0.53;SOR=0.617;VarDP=47 GT:AD:DP:GQ:PL:SB 1:1,18:19:99:581,0:1,0,10,8 0/1:13,15:28:99:592,0,499:7,6,8,7 +chrX 4522091 . TATAGATAG TATAG,T 1532.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=27,19;AS_QD=34.72,24.19;BaseQRankSum=0.778;DP=79;ExcessHet=0.0000;FS=7.301;MQ=59.90;MQRankSum=0;QD=32.75;ReadPosRankSum=-0.166;SOR=0.728;VarDP=48 GT:AD:DP:GQ:PL:SB 1:0,18,0:18:99:790,0,790:0,0,8,10 1/2:2,9,19:30:99:782,565,712,274,0,353:2,0,11,17 +chrX 4523608 . AT A,ATT 452.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=14,23;AS_QD=7.95,11.03;BaseQRankSum=-0.795;DP=90;ExcessHet=0.0000;FS=1.612;MQ=59.72;MQRankSum=-0.407;QD=10.93;ReadPosRankSum=0.134;SOR=0.322;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,342,342 1/2:8,14,23:45:99:.:492,317,586,150,0,320:6,2,22,15 +chrX 4528448 . A G 1697 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=22.72;BaseQRankSum=-2.157;DP=78;ExcessHet=0.0000;FS=1.016;MQ=60.00;MQRankSum=0;QD=22.72;ReadPosRankSum=-1.016;SOR=0.471;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:1002,0:0,0,16,14 0/1:19,27:46:99:725,0,522:8,11,12,15 +chrX 4529079 . C G 1356 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=19.80;BaseQRankSum=-0.426;DP=72;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=19.80;ReadPosRankSum=0.353;SOR=0.579;VarDP=70 GT:AD:DP:GQ:PL:SB 1:1,28:29:99:878,0:0,1,17,11 0/1:22,19:41:99:508,0,606:16,6,14,5 +chrX 4531214 . C A 1520 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=20.95;BaseQRankSum=0.795;DP=76;ExcessHet=0.0000;FS=3.360;MQ=60.00;MQRankSum=0;QD=20.95;ReadPosRankSum=-0.426;SOR=0.392;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:898,0:0,0,13,14 0/1:23,24:47:99:652,0,598:14,9,13,11 +chrX 4532768 . ATTT A,AT 887.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=19,8;AS_QD=18.54,5.57;BaseQRankSum=2.24;DP=72;ExcessHet=0.0000;FS=4.112;MQ=59.77;MQRankSum=0.694;QD=18.92;ReadPosRankSum=1.561;SOR=0.411;VarDP=49 GT:AD:DP:GQ:PL:SB 1:1,19,0:20:99:760,0,781:1,0,9,10 0/2:21,0,8:29:99:167,229,757,0,529,504:7,14,5,3 +chrX 4533549 . T TACACAC 1840.97 . AC=2;AF=0.667;AN=3;AS_AltDP=46;AS_QD=30.32;BaseQRankSum=-0.566;DP=80;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=30.32;ReadPosRankSum=0.888;SOR=0.584;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:1044,0:0,0,14,10 0/1:16,22:38:99:836,0,596:10,6,13,9 +chrX 4534361 . T TAATA 3197.97 . AC=3;AF=1.00;AN=3;AS_AltDP=74;AS_QD=29.62;DP=79;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.74;SOR=0.747;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:1228,0:0,0,15,13 1/1:0,46:46:99:2009,138,0:0,0,23,23 +chrX 4534631 . C T 1390 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=18.93;BaseQRankSum=-0.33;DP=77;ExcessHet=0.0000;FS=1.959;MQ=60.00;MQRankSum=0;QD=18.93;ReadPosRankSum=0.071;SOR=0.959;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:893,0:0,0,15,11 0/1:28,21:49:99:527,0,755:15,13,13,8 +chrX 4538186 . C T 1894 . AC=2;AF=0.667;AN=3;AS_AltDP=66;AS_QD=21.14;BaseQRankSum=1.897;DP=93;ExcessHet=0.0000;FS=1.959;MQ=60.00;MQRankSum=0;QD=21.14;ReadPosRankSum=0.256;SOR=1.015;VarDP=91 GT:AD:DP:GQ:PL:SB 1:2,32:34:99:1023,0:2,0,14,18 0/1:23,34:57:99:901,0,573:10,13,13,21 +chrX 4540479 . C T 1343 . AC=2;AF=0.667;AN=3;AS_AltDP=46;AS_QD=20.49;BaseQRankSum=0.102;DP=68;ExcessHet=0.0000;FS=3.593;MQ=59.90;MQRankSum=-0.952;QD=20.49;ReadPosRankSum=-1.246;SOR=0.687;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:819,0:0,0,14,11 0/1:21,21:42:99:554,0,538:9,12,11,10 +chrX 4540844 . T C 1364 . AC=2;AF=0.667;AN=3;AS_AltDP=49;AS_QD=19.91;BaseQRankSum=0.928;DP=73;ExcessHet=0.0000;FS=2.207;MQ=45.32;MQRankSum=2.45;QD=19.91;ReadPosRankSum=1.057;SOR=0.947;VarDP=70 GT:AD:DP:GQ:PL:SB 1:1,28:29:99:817,0:0,1,12,16 0/1:20,21:41:99:577,0,507:11,9,9,12 +chrX 4541979 . A C 2094 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=26.89;BaseQRankSum=-0.624;DP=79;ExcessHet=0.0000;FS=1.982;MQ=52.46;MQRankSum=-5.547;QD=26.89;ReadPosRankSum=0.386;SOR=0.451;VarDP=79 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,26:26:99:.:.:1159,0:.:0,0,15,11 0|1:28,25:53:99:0|1:4541979_A_C:965,0,1100:4541979:18,10,14,11 +chrX 4541982 . A G 2057 . AC=2;AF=0.667;AN=3;AS_AltDP=50;AS_QD=26.42;BaseQRankSum=0.139;DP=79;ExcessHet=0.0000;FS=0.894;MQ=52.46;MQRankSum=-5.625;QD=26.42;ReadPosRankSum=0.098;SOR=0.555;VarDP=79 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,25:25:99:.:.:1125,0:.:0,0,15,10 0|1:29,25:54:99:0|1:4541979_A_C:962,0,1131:4541979:18,11,14,11 +chrX 4541985 . G A 2015 . AC=2;AF=0.667;AN=3;AS_AltDP=49;AS_QD=26.22;BaseQRankSum=-0.448;DP=79;ExcessHet=0.0000;FS=0.902;MQ=52.48;MQRankSum=-5.551;QD=26.22;ReadPosRankSum=0.426;SOR=0.527;VarDP=78 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,25:25:99:.:.:1125,0:.:0,0,15,10 0|1:29,24:53:99:0|1:4541979_A_C:920,0,1134:4541979:18,11,13,11 +chrX 4542167 . T C 993 . AC=2;AF=0.667;AN=3;AS_AltDP=38;AS_QD=15.04;BaseQRankSum=-1.319;DP=72;ExcessHet=0.0000;FS=0.930;MQ=49.27;MQRankSum=-5.102;QD=15.04;ReadPosRankSum=-0.254;SOR=0.914;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,22:22:99:669,0:0,0,10,12 0/1:30,16:46:99:354,0,835:15,15,7,9 +chrX 4542555 . C T 1882 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=23.60;BaseQRankSum=-0.381;DP=83;ExcessHet=0.0000;FS=0.901;MQ=57.66;MQRankSum=0.071;QD=23.60;ReadPosRankSum=0.866;SOR=0.698;VarDP=81 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,25:25:99:.:.:1094,0:.:0,0,14,11 0|1:25,31:56:99:0|1:4542555_C_T:818,0,876:4542555:13,12,13,18 +chrX 4542565 . G C 2418 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=29.85;BaseQRankSum=-0.561;DP=85;ExcessHet=0.0000;FS=2.054;MQ=58.07;MQRankSum=-2.184;QD=29.85;ReadPosRankSum=1.038;SOR=0.795;VarDP=82 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,27:27:99:.:.:1154,0:.:0,0,14,13 0|1:21,34:55:99:0|1:4542555_C_T:1294,0,507:4542555:11,10,14,20 +chrX 4542839 . T A 47 . AC=1;AF=0.333;AN=3;AS_AltDP=7;AS_QD=1.54;BaseQRankSum=0.968;DP=80;ExcessHet=0.0000;FS=3.794;MQ=42.14;MQRankSum=-2.703;QD=1.54;ReadPosRankSum=0.811;SOR=1.561;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,784 0/1:43,7:50:77:.:77,0,1286:20,23,5,2 +chrX 4543024 . C T 1367 . AC=2;AF=0.667;AN=3;AS_AltDP=45;AS_QD=20.85;BaseQRankSum=1.329;DP=67;ExcessHet=0.0000;FS=6.921;MQ=42.01;MQRankSum=-5.158;QD=20.85;ReadPosRankSum=-2.091;SOR=0.241;VarDP=67 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,30:30:99:.:.:979,0:.:0,0,16,14 0|1:22,15:37:99:0|1:4543015_A_G:418,0,589:4543015:15,7,7,8 +chrX 4543203 . T C 2402 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=29.30;BaseQRankSum=-1.278;DP=87;ExcessHet=0.0000;FS=0.000;MQ=49.09;MQRankSum=-6.038;QD=29.30;ReadPosRankSum=-0.414;SOR=0.726;VarDP=83 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,27:27:99:.:.:1184,0:.:0,0,12,15 0|1:24,32:56:99:0|1:4543203_T_C:1248,0,901:4543203:12,12,17,15 +chrX 4543222 . G A 2560 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=28.46;BaseQRankSum=-1.006;DP=92;ExcessHet=0.0000;FS=0.840;MQ=48.51;MQRankSum=-6.582;QD=28.46;ReadPosRankSum=0.883;SOR=0.824;VarDP=91 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,28:28:99:.:.:1260,0:.:0,0,15,13 0|1:29,34:63:99:0|1:4543203_T_C:1330,0,1115:4543203:15,14,19,15 +chrX 4543231 . T C 2399 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=27.92;BaseQRankSum=-0.647;DP=88;ExcessHet=0.0000;FS=0.853;MQ=48.12;MQRankSum=-6.635;QD=27.92;ReadPosRankSum=1.619;SOR=0.839;VarDP=87 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,27:27:99:.:.:1215,0:.:0,0,15,12 0|1:29,31:60:99:0|1:4543203_T_C:1214,0,1124:4543203:15,14,17,14 +chrX 4543232 . G A 2360 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=28.12;BaseQRankSum=-0.909;DP=86;ExcessHet=0.0000;FS=1.887;MQ=47.98;MQRankSum=-6.506;QD=28.12;ReadPosRankSum=1.964;SOR=0.960;VarDP=85 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,27:27:99:.:.:1215,0:.:0,0,15,12 0|1:28,30:58:99:0|1:4543203_T_C:1175,0,1085:4543203:14,14,17,13 +chrX 4543343 . C T 1378 . AC=2;AF=0.667;AN=3;AS_AltDP=49;AS_QD=18.77;BaseQRankSum=-0.639;DP=77;ExcessHet=0.0000;FS=0.000;MQ=54.84;MQRankSum=-3.957;QD=18.77;ReadPosRankSum=0.269;SOR=0.696;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:863,0:0,0,11,16 0/1:26,22:48:99:545,0,706:10,16,8,14 +chrX 4543525 . T C 1418 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=20.11;BaseQRankSum=0;DP=76;ExcessHet=0.0000;FS=1.008;MQ=55.80;MQRankSum=-3.273;QD=20.11;ReadPosRankSum=-0.938;SOR=0.617;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:867,0:0,0,14,15 0/1:20,23:43:99:581,0,492:9,11,13,10 +chrX 4543631 . G T 1321 . AC=2;AF=0.667;AN=3;AS_AltDP=45;AS_QD=20.16;BaseQRankSum=0.459;DP=70;ExcessHet=0.0000;FS=0.000;MQ=57.54;MQRankSum=-2.268;QD=20.16;ReadPosRankSum=-1.352;SOR=0.657;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,22:22:99:727,0:0,0,10,12 0/1:22,23:45:99:624,0,579:9,13,9,14 +chrX 4544070 . CT C 1078.97 . AC=2;AF=0.667;AN=3;AS_AltDP=46;AS_QD=15.11;BaseQRankSum=-0.041;DP=88;ExcessHet=0.0000;FS=0.000;MQ=59.14;MQRankSum=-2.05;QD=15.11;ReadPosRankSum=-1.692;SOR=0.676;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,19:19:99:529,0:0,0,9,10 0/1:28,27:55:99:589,0,587:12,16,11,16 +chrX 4544248 . C T 1418 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=21.61;BaseQRankSum=-0.574;DP=72;ExcessHet=0.0000;FS=5.320;MQ=46.51;MQRankSum=-2.415;QD=21.61;ReadPosRankSum=-0.6;SOR=0.686;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:967,0:0,0,15,14 0/1:20,18:38:99:481,0,561:12,8,6,12 +chrX 4544329 . T G 923 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=34.04;DP=78;ExcessHet=0.0000;FS=0.000;MQ=52.47;QD=34.04;SOR=0.997;VarDP=28 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,28:28:99:.:953,0:0,0,12,16 0/0:.:50:67:50:0,67,1011 +chrX 4545951 . C T 553 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=12.67;BaseQRankSum=2.799;DP=73;ExcessHet=0.0000;FS=2.454;MQ=50.62;MQRankSum=-0.593;QD=12.67;ReadPosRankSum=0.75;SOR=0.937;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:25:99:25:0,417 0/1:25,21:46:99:.:583,0,586:12,13,12,9 +chrX 4546820 . A AG 1895.97 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=23.60;BaseQRankSum=0.396;DP=84;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=23.60;ReadPosRankSum=-0.623;SOR=0.713;VarDP=82 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:1085,0:0,0,13,15 0/1:28,26:54:99:850,0,855:12,16,10,16 +chrX 4547948 . C CA 601.97 . AC=2;AF=0.667;AN=3;AS_AltDP=33;AS_QD=14.57;BaseQRankSum=-0.778;DP=57;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.57;ReadPosRankSum=1.553;SOR=0.631;VarDP=44 GT:AD:DP:GQ:PL:SB 1:0,16:16:99:357,0:0,0,11,5 0/1:11,17:28:99:284,0,185:7,4,9,8 +chrX 4548241 . G C 1325 . AC=1;AF=0.333;AN=3;AS_AltDP=39;AS_QD=34.74;DP=97;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=34.74;SOR=1.236;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,39:39:99:.:1355,0:0,0,24,15 0/0:.:57:72:57:0,72,1158 +chrX 4550815 . A G 1696 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=23.32;BaseQRankSum=-0.769;DP=78;ExcessHet=0.0000;FS=3.675;MQ=60.00;MQRankSum=0;QD=23.32;ReadPosRankSum=0.379;SOR=0.341;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:1008,0:0,0,15,14 0/1:19,26:45:99:718,0,505:12,7,13,13 +chrX 4551315 . C CTATGTATGTATGTATG 606.97 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=16.56;BaseQRankSum=-1.351;DP=90;ExcessHet=0.0000;FS=1.243;MQ=60.00;MQRankSum=0;QD=16.56;ReadPosRankSum=-0.581;SOR=0.668;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:39:99:39:0,507 0/1:22,17:39:99:.:646,0,854:12,10,8,9 +chrX 4551339 . G GTATCTATC,GTATGTATGTATGTATCTATC 1044.97 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=0,18;AS_QD=33.43,31.79;DP=86;ExcessHet=0.0000;FS=0.000;MQ=59.51;QD=60.22;SOR=0.693;VarDP=18 GT:AD:DP:GQ:MIN_DP:PL:SB 2:0,0,18:18:99:.:1084,1053,0:0,0,9,9 0/0:.:52:99:52:0,102,1530,102,1530,1530 +chrX 4551639 . GA G 56.97 . AC=1;AF=0.333;AN=3;AS_AltDP=8;AS_QD=2.91;BaseQRankSum=-2.214;DP=87;ExcessHet=0.0000;FS=6.237;MQ=60.00;MQRankSum=0;QD=2.91;ReadPosRankSum=0.21;SOR=0.954;VarDP=33 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:36:99:36:0,442 0/1:25,8:33:96:.:96,0,561:16,9,3,5 +chrX 4551757 . A G 2009 . AC=2;AF=0.667;AN=3;AS_AltDP=73;AS_QD=20.19;BaseQRankSum=-3.238;DP=105;ExcessHet=0.0000;FS=7.273;MQ=60.00;MQRankSum=0;QD=20.19;ReadPosRankSum=-1.598;SOR=0.641;VarDP=101 GT:AD:DP:GQ:PL:SB 1:0,38:38:99:1241,0:0,0,17,21 0/1:28,35:63:99:798,0,755:17,11,16,19 +chrX 4553134 . C A 1445 . AC=2;AF=0.667;AN=3;AS_AltDP=50;AS_QD=18.21;BaseQRankSum=0.756;DP=84;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=18.21;ReadPosRankSum=0;SOR=0.653;VarDP=81 GT:AD:DP:GQ:PL:SB 1:1,27:28:99:864,0:0,1,11,16 0/1:30,23:53:99:611,0,794:12,18,9,14 +chrX 4553987 . A G 1974 . AC=2;AF=0.667;AN=3;AS_AltDP=66;AS_QD=20.88;BaseQRankSum=0.365;DP=99;ExcessHet=0.0000;FS=0.832;MQ=60.00;MQRankSum=0;QD=20.88;ReadPosRankSum=0.849;SOR=0.886;VarDP=96 GT:AD:DP:GQ:PL:SB 1:0,37:37:99:1204,0:0,0,21,16 0/1:30,29:59:99:800,0,825:15,15,15,14 +chrX 4554493 . G A 1449 . AC=2;AF=0.667;AN=3;AS_AltDP=48;AS_QD=19.72;BaseQRankSum=0.893;DP=78;ExcessHet=0.0000;FS=3.273;MQ=59.75;MQRankSum=0;QD=19.72;ReadPosRankSum=-0.533;SOR=0.514;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:1013,0:0,0,15,15 0/1:27,18:45:99:466,0,764:11,16,10,8 +chrX 4555001 . A T 1431 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=20.87;BaseQRankSum=-0.622;DP=76;ExcessHet=0.0000;FS=3.786;MQ=60.00;MQRankSum=0;QD=20.87;ReadPosRankSum=-0.598;SOR=1.244;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:842,0:0,0,11,17 0/1:18,24:42:99:619,0,456:9,9,9,15 +chrX 4555022 . G GA 1037.97 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=13.99;BaseQRankSum=2.871;DP=89;ExcessHet=0.0000;FS=10.769;MQ=59.81;MQRankSum=0;QD=13.99;ReadPosRankSum=0.992;SOR=1.281;VarDP=77 GT:AD:DP:GQ:PL:SB 1:2,27:29:99:636,0:1,1,9,18 0/1:22,26:48:99:441,0,398:13,9,10,16 +chrX 4556083 . G A 2530 . AC=3;AF=1.00;AN=3;AS_AltDP=79;AS_QD=32.41;DP=84;ExcessHet=0.0000;FS=0.000;MQ=59.79;QD=32.41;SOR=0.941;VarDP=79 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:1013,0:0,0,19,11 1/1:0,49:49:99:1547,147,0:0,0,25,24 +chrX 4556167 . GTTTGTT G 2954.97 . AC=3;AF=1.00;AN=3;AS_AltDP=67;AS_QD=33.89;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.69;SOR=0.849;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,21:21:99:939,0:0,0,9,12 1/1:0,46:46:99:2055,139,0:0,0,22,24 +chrX 4557558 . A G 2417 . AC=3;AF=1.00;AN=3;AS_AltDP=73;AS_QD=33.52;DP=75;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.52;SOR=0.963;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,21:21:99:720,0:0,0,11,10 1/1:0,52:52:99:1727,156,0:0,0,30,22 +chrX 4557712 . A G 2138 . AC=3;AF=1.00;AN=3;AS_AltDP=67;AS_QD=32.36;DP=69;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.36;SOR=1.066;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:734,0:0,0,11,12 1/1:0,44:44:99:1434,132,0:0,0,17,27 +chrX 4557780 . T C 2206 . AC=3;AF=1.00;AN=3;AS_AltDP=68;AS_QD=32.88;DP=71;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.88;SOR=0.693;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,20:20:99:685,0:0,0,10,10 1/1:0,48:48:99:1551,143,0:0,0,24,24 +chrX 4557888 . G A 2718 . AC=3;AF=1.00;AN=3;AS_AltDP=84;AS_QD=32.71;DP=84;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.71;SOR=0.741;VarDP=84 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:966,0:0,0,14,17 1/1:0,53:53:99:1782,159,0:0,0,29,24 +chrX 4557929 . T C 586 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=13.39;BaseQRankSum=0.352;DP=79;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.39;ReadPosRankSum=1.209;SOR=0.706;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,725 0/1:23,23:46:99:.:616,0,622:12,11,11,12 +chrX 4558671 . C G 2700 . AC=3;AF=1.00;AN=3;AS_AltDP=84;AS_QD=32.50;DP=87;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.50;SOR=1.075;VarDP=84 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:909,0:0,0,17,10 1/1:0,57:57:99:1821,171,0:0,0,32,25 +chrX 4559206 . T C 2696 . AC=3;AF=1.00;AN=3;AS_AltDP=87;AS_QD=30.98;BaseQRankSum=1.939;DP=89;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=30.98;ReadPosRankSum=-0.867;SOR=0.272;VarDP=88 GT:AD:DP:GQ:PL:SB 1:1,35:36:99:1049,0:1,0,19,16 1/1:0,52:52:99:1677,155,0:0,0,27,25 +chrX 4559275 . C T 2603 . AC=3;AF=1.00;AN=3;AS_AltDP=80;AS_QD=32.91;DP=80;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.91;SOR=1.096;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:973,0:0,0,17,11 1/1:0,52:52:99:1660,156,0:0,0,30,22 +chrX 4559372 . C A 2278 . AC=3;AF=1.00;AN=3;AS_AltDP=69;AS_QD=33.45;DP=71;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.45;SOR=0.980;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:884,0:0,0,18,8 1/1:0,43:43:99:1424,128,0:0,0,21,22 +chrX 4560756 . A AC 2883.97 . AC=3;AF=1.00;AN=3;AS_AltDP=69;AS_QD=26.71;BaseQRankSum=-0.151;DP=73;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=41.76;ReadPosRankSum=1.446;SOR=0.259;VarDP=70 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,23:24:99:.:.:979,0:.:1,0,14,9 1|1:0,46:46:99:0|1:4560756_A_AC:1944,138,0:4560756:0,0,22,24 +chrX 4560757 . A AC 2883.97 . AC=3;AF=1.00;AN=3;AS_AltDP=69;AS_QD=33.14;BaseQRankSum=2.772;DP=72;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=41.76;ReadPosRankSum=1.589;SOR=0.259;VarDP=70 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,23:24:99:.:.:979,0:.:1,0,14,9 1|1:0,46:46:99:0|1:4560756_A_AC:1944,138,0:4560756:0,0,22,24 +chrX 4562966 . T A 2148 . AC=3;AF=1.00;AN=3;AS_AltDP=69;AS_QD=31.11;BaseQRankSum=-0.189;DP=73;ExcessHet=0.0000;FS=3.074;MQ=60.00;MQRankSum=0;QD=31.11;ReadPosRankSum=-0.651;SOR=0.316;VarDP=70 GT:AD:DP:GQ:PL:SB 1:1,16:17:99:434,0:1,0,7,8 1/1:0,53:53:99:1744,159,0:0,0,26,27 +chrX 4563564 . C CA 815.97 . AC=3;AF=1.00;AN=3;AS_AltDP=46;AS_QD=18.59;DP=61;ExcessHet=0.0000;FS=0.000;MQ=58.62;QD=18.59;SOR=0.976;VarDP=46 GT:AD:DP:GQ:PL:SB 1:0,20:20:99:377,0:0,0,10,10 1/1:0,26:26:75:478,75,0:0,0,10,16 +chrX 4564395 . A T 2942 . AC=3;AF=1.00;AN=3;AS_AltDP=92;AS_QD=31.96;BaseQRankSum=-0.485;DP=94;ExcessHet=0.0000;FS=3.557;MQ=59.82;MQRankSum=0;QD=31.96;ReadPosRankSum=0.664;SOR=0.653;VarDP=93 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:1087,0:0,0,12,21 1/1:1,59:60:99:1885,146,0:1,0,28,31 +chrX 4564625 . A G 2526 . AC=3;AF=1.00;AN=3;AS_AltDP=77;AS_QD=33.19;DP=79;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.19;SOR=1.079;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:888,0:0,0,18,9 1/1:0,50:50:99:1668,150,0:0,0,27,23 +chrX 4565109 . A G 1903 . AC=3;AF=1.00;AN=3;AS_AltDP=63;AS_QD=30.68;DP=63;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.68;SOR=1.092;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,20:20:99:605,0:0,0,7,13 1/1:0,43:43:99:1328,128,0:0,0,19,24 +chrX 4565237 . G T 1952 . AC=3;AF=1.00;AN=3;AS_AltDP=58;AS_QD=34.17;DP=60;ExcessHet=0.0000;FS=0.000;MQ=59.53;QD=34.17;SOR=0.997;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:790,0:0,0,15,8 1/1:0,35:35:99:1192,105,0:0,0,18,17 +chrX 4566311 . A G 2695 . AC=3;AF=1.00;AN=3;AS_AltDP=83;AS_QD=32.83;DP=86;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.83;SOR=0.987;VarDP=83 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:1028,0:0,0,13,18 1/1:0,52:52:99:1697,156,0:0,0,23,29 +chrX 4567272 . T G 2346 . AC=3;AF=1.00;AN=3;AS_AltDP=75;AS_QD=31.68;DP=76;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.68;SOR=0.719;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:918,0:0,0,15,13 1/1:0,47:47:99:1458,140,0:0,0,23,24 +chrX 4567590 . G T 2268 . AC=3;AF=1.00;AN=3;AS_AltDP=70;AS_QD=32.83;DP=71;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.83;SOR=0.941;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,20:20:99:655,0:0,0,14,6 1/1:0,50:50:99:1643,150,0:0,0,25,25 +chrX 4568029 . G A 1818 . AC=3;AF=1.00;AN=3;AS_AltDP=57;AS_QD=32.42;DP=60;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.42;SOR=0.877;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,21:21:99:683,0:0,0,10,11 1/1:0,36:36:99:1165,108,0:0,0,16,20 +chrX 4568072 . C T 2020 . AC=3;AF=1.00;AN=3;AS_AltDP=60;AS_QD=34.17;DP=60;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=34.17;SOR=0.693;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,22:22:99:739,0:0,0,11,11 1/1:0,38:38:99:1311,114,0:0,0,19,19 +chrX 4568701 . G A 503 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=12.11;BaseQRankSum=-2.327;DP=73;ExcessHet=0.0000;FS=2.649;MQ=59.87;MQRankSum=1.045;QD=12.11;ReadPosRankSum=-0.434;SOR=0.307;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:99:28:0,591 0/1:22,22:44:99:.:533,0,634:8,14,11,11 +chrX 4568783 . C G 2902 . AC=3;AF=1.00;AN=3;AS_AltDP=90;AS_QD=32.58;DP=91;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.58;SOR=0.784;VarDP=90 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:809,0:0,0,11,14 1/1:0,65:65:99:2123,195,0:0,0,36,29 +chrX 4569022 . T G 2724 . AC=3;AF=1.00;AN=3;AS_AltDP=85;AS_QD=32.40;DP=88;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.40;SOR=0.765;VarDP=85 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:931,0:0,0,17,11 1/1:0,57:57:99:1823,171,0:0,0,24,33 +chrX 4569468 . G A 3028 . AC=3;AF=1.00;AN=3;AS_AltDP=91;AS_QD=33.60;DP=98;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.60;SOR=1.460;VarDP=91 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:1117,0:0,0,19,14 1/1:0,58:58:99:1941,174,0:0,0,40,18 +chrX 4569499 . A T 3075 . AC=3;AF=1.00;AN=3;AS_AltDP=92;AS_QD=33.75;DP=92;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.75;SOR=1.280;VarDP=92 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:1092,0:0,0,18,14 1/1:0,60:60:99:2013,180,0:0,0,39,21 +chrX 4569743 . C A 3433 . AC=3;AF=1.00;AN=3;AS_AltDP=106;AS_QD=32.67;DP=111;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.67;SOR=0.770;VarDP=106 GT:AD:DP:GQ:PL:SB 1:0,20:20:99:675,0:0,0,11,9 1/1:0,86:86:99:2788,257,0:0,0,40,46 +chrX 4570389 . T C 2569 . AC=3;AF=1.00;AN=3;AS_AltDP=78;AS_QD=33.32;DP=80;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.32;SOR=1.040;VarDP=78 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:829,0:0,0,16,9 1/1:0,53:53:99:1770,159,0:0,0,29,24 +chrX 4570599 . T C 2720 . AC=3;AF=1.00;AN=3;AS_AltDP=82;AS_QD=33.54;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.54;SOR=0.961;VarDP=82 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:953,0:0,0,12,16 1/1:0,54:54:99:1797,162,0:0,0,24,30 +chrX 4571090 . C T 2519 . AC=3;AF=1.00;AN=3;AS_AltDP=77;AS_QD=33.10;DP=81;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.10;SOR=1.300;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:733,0:0,0,11,12 1/1:0,54:54:99:1816,162,0:0,0,37,17 +chrX 4571214 . GT G 1927.97 . AC=3;AF=1.00;AN=3;AS_AltDP=71;AS_QD=26.95;BaseQRankSum=0.494;DP=77;ExcessHet=0.0000;FS=6.451;MQ=60.00;MQRankSum=0;QD=26.95;ReadPosRankSum=0.19;SOR=0.355;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,21:21:99:592,0:0,0,8,13 1/1:2,50:52:99:1375,125,0:2,0,25,25 +chrX 4572813 . T C 3350 . AC=3;AF=1.00;AN=3;AS_AltDP=77;AS_QD=30.33;DP=77;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.90;SOR=1.079;VarDP=77 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,27:27:99:.:.:1184,0:.:0,0,16,11 1|1:0,50:50:99:0|1:4572813_T_C:2196,151,0:4572813:0,0,29,21 +chrX 4572821 . A G 3325 . AC=3;AF=1.00;AN=3;AS_AltDP=77;AS_QD=28.95;DP=77;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.57;SOR=0.948;VarDP=77 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,27:27:99:.:.:1159,0:.:0,0,14,13 1|1:0,50:50:99:0|1:4572813_T_C:2196,151,0:4572813:0,0,29,21 +chrX 4573630 . C T 2472 . AC=3;AF=1.00;AN=3;AS_AltDP=76;AS_QD=32.92;DP=76;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.92;SOR=0.984;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:1018,0:0,0,11,20 1/1:0,45:45:99:1484,135,0:0,0,22,23 +chrX 4574547 . G A 2497 . AC=3;AF=1.00;AN=3;AS_AltDP=77;AS_QD=32.82;DP=79;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.82;SOR=0.719;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,38:38:99:1211,0:0,0,20,18 1/1:0,39:39:99:1316,117,0:0,0,19,20 +chrX 4576615 . G A 2357 . AC=3;AF=1.00;AN=3;AS_AltDP=75;AS_QD=31.83;DP=77;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.83;SOR=0.832;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:709,0:0,0,7,16 1/1:0,52:52:99:1678,156,0:0,0,33,19 +chrX 4576964 . T G 2008 . AC=3;AF=1.00;AN=3;AS_AltDP=62;AS_QD=32.87;DP=62;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.87;SOR=0.693;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:748,0:0,0,12,11 1/1:0,39:39:99:1290,117,0:0,0,19,20 +chrX 4577067 . C A 1821 . AC=3;AF=1.00;AN=3;AS_AltDP=58;AS_QD=31.91;DP=58;ExcessHet=0.0000;FS=0.000;MQ=58.70;QD=31.91;SOR=0.836;VarDP=58 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,18:18:99:.:.:618,0:.:0,0,7,11 1|1:0,40:40:99:0|1:4577067_C_A:1233,116,0:4577067:0,0,24,16 +chrX 4577095 . AAAAATT A 1459.97 . AC=2;AF=0.667;AN=3;AS_AltDP=43;AS_QD=34.07;BaseQRankSum=2.105;DP=67;ExcessHet=0.0000;FS=4.130;MQ=57.60;MQRankSum=-0.33;QD=34.07;ReadPosRankSum=-0.041;SOR=1.086;VarDP=44 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:20:99:20:.:.:0,272 1|1:1,43:44:99:.:0|1:4577067_C_A:1499,124,0:4577067:0,1,27,16 +chrX 4577096 . AAAATT A,* 736.97 . AC=1,2;AF=0.333,0.667;AN=3;AS_AltDP=20,0;AS_QD=25.93,35.25;DP=68;ExcessHet=0.0000;FS=3.438;MQ=56.46;QD=38.80;SOR=0.583;VarDP=20 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,20,0:20:99:.:.:776,0,777:.:0,0,8,12 2|2:1,0,43:44:99:0|1:4577067_C_A:1499,1501,1504,124,127,0:4577067:0,1,27,16 +chrX 4578723 . A G 1016 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=29.89;DP=87;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=29.89;SOR=1.002;VarDP=35 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,35:35:99:.:1046,0:0,0,15,20 0/0:.:51:46:51:0,46,1061 +chrX 4579142 . T A 2952 . AC=3;AF=1.00;AN=3;AS_AltDP=92;AS_QD=32.41;DP=98;ExcessHet=0.0000;FS=0.000;MQ=59.83;QD=32.41;SOR=1.216;VarDP=92 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:1040,0:0,0,15,17 1/1:0,60:60:99:1942,180,0:0,0,21,39 +chrX 4579353 . T TAC 2501.97 . AC=3;AF=1.00;AN=3;AS_AltDP=73;AS_QD=34.34;BaseQRankSum=-0.352;DP=85;ExcessHet=0.0000;FS=0.000;MQ=59.72;MQRankSum=0;QD=34.34;ReadPosRankSum=-0.075;SOR=0.266;VarDP=74 GT:AD:DP:GQ:PL:SB 1:1,22:23:99:719,0:0,1,10,12 1/1:0,51:51:99:1822,153,0:0,0,27,24 +chrX 4579983 . G A 2465 . AC=3;AF=1.00;AN=3;AS_AltDP=76;AS_QD=32.83;DP=79;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.83;SOR=0.984;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,22:22:99:745,0:0,0,13,9 1/1:0,54:54:99:1750,162,0:0,0,20,34 +chrX 4580214 . A T 2990 . AC=3;AF=1.00;AN=3;AS_AltDP=95;AS_QD=31.46;BaseQRankSum=1.628;DP=100;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=31.46;ReadPosRankSum=-1.67;SOR=0.309;VarDP=96 GT:AD:DP:GQ:PL:SB 1:0,41:41:99:1326,0:0,0,20,21 1/1:1,54:55:99:1694,140,0:0,1,23,31 +chrX 4580415 . ATT A 1964.97 . AC=3;AF=1.00;AN=3;AS_AltDP=53;AS_QD=29.87;DP=62;ExcessHet=0.0000;FS=0.000;MQ=59.87;QD=37.81;SOR=0.730;VarDP=53 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:911,0:0,0,13,11 1/1:0,29:29:87:1093,87,0:0,0,14,15 +chrX 4580805 . T A 2324 . AC=3;AF=1.00;AN=3;AS_AltDP=70;AS_QD=33.63;DP=71;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.63;SOR=0.693;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:968,0:0,0,13,16 1/1:0,41:41:99:1386,123,0:0,0,22,19 +chrX 4581090 . G T 2463 . AC=3;AF=1.00;AN=3;AS_AltDP=76;AS_QD=32.80;DP=80;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.80;SOR=0.984;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:871,0:0,0,15,11 1/1:0,50:50:99:1622,149,0:0,0,28,22 +chrX 4582003 . CAAAAAAAAAAAA C 74.97 . AC=1;AF=1.00;AN=1;AS_AltDP=5;AS_QD=14.25;DP=39;ExcessHet=0.0000;FS=7.068;MQ=59.75;MQRankSum=0;QD=14.25;SOR=0.610;VarDP=8 GT:AD:DP:GQ:MIN_DP:PL:SB 1:3,5:8:99:.:114,0:0,3,3,2 ./.:.:16:0:16:0,0,0 +chrX 4582488 . C T 3127 . AC=3;AF=1.00;AN=3;AS_AltDP=96;AS_QD=32.55;BaseQRankSum=2.573;DP=100;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=32.55;ReadPosRankSum=-0.533;SOR=0.223;VarDP=97 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:1052,0:0,0,17,15 1/1:1,64:65:99:2105,185,0:0,1,31,33 +chrX 4582755 . G GTGTA 3403.97 . AC=3;AF=1.00;AN=3;AS_AltDP=77;AS_QD=31.52;DP=84;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.71;SOR=0.887;VarDP=77 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,24:24:99:.:.:1080,0:.:0,0,9,15 1|1:0,53:53:99:0|1:4582755_G_GTGTA:2363,159,0:4582755:0,0,26,27 +chrX 4582777 . G A 3254 . AC=3;AF=1.00;AN=3;AS_AltDP=76;AS_QD=22.30;DP=78;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.21;SOR=0.859;VarDP=76 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,23:23:99:.:.:1014,0:.:0,0,8,15 1|1:0,53:53:99:0|1:4582755_G_GTGTA:2270,159,0:4582755:0,0,27,26 +chrX 4583562 . G C 2158 . AC=3;AF=1.00;AN=3;AS_AltDP=68;AS_QD=32.18;DP=69;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.18;SOR=1.098;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:800,0:0,0,13,10 1/1:0,45:45:99:1388,134,0:0,0,27,18 +chrX 4584371 . G A 2293 . AC=3;AF=1.00;AN=3;AS_AltDP=69;AS_QD=33.67;DP=73;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.67;SOR=0.910;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:1043,0:0,0,15,15 1/1:0,39:39:99:1280,117,0:0,0,16,23 +chrX 4584856 . A G 2612 . AC=3;AF=1.00;AN=3;AS_AltDP=84;AS_QD=30.72;BaseQRankSum=2.32;DP=86;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=30.72;ReadPosRankSum=0.624;SOR=0.791;VarDP=86 GT:AD:DP:GQ:PL:SB 1:2,28:30:99:848,0:1,1,15,13 1/1:0,56:56:99:1794,167,0:0,0,29,27 +chrX 4585208 . A G 2182 . AC=3;AF=1.00;AN=3;AS_AltDP=69;AS_QD=32.06;DP=75;ExcessHet=0.0000;FS=0.000;MQ=59.94;QD=32.06;SOR=0.781;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,22:22:99:699,0:0,0,10,12 1/1:0,47:47:99:1513,141,0:0,0,23,24 +chrX 4585444 . G A,GAAAAA 2327 . AC=0,3;AF=0.00,1.00;AN=3;AS_AltDP=4,47;AS_QD=29.54,28.09;DP=74;ExcessHet=0.0000;FS=0.000;MQ=58.93;QD=46.22;SOR=1.436;VarDP=51 GT:AD:DP:GQ:PL:SB 2:0,4,11:15:99:789,341,0:0,0,6,9 2/2:0,0,36:36:99:1568,1569,1569,107,108,0:0,0,27,9 +chrX 4585638 . T C 2753 . AC=3;AF=1.00;AN=3;AS_AltDP=86;AS_QD=32.36;DP=91;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.36;SOR=1.005;VarDP=86 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:774,0:0,0,15,9 1/1:0,62:62:99:2009,186,0:0,0,22,40 +chrX 4585797 . A G 3002 . AC=3;AF=1.00;AN=3;AS_AltDP=93;AS_QD=32.60;DP=96;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.60;SOR=0.758;VarDP=93 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:928,0:0,0,14,15 1/1:0,64:64:99:2104,192,0:0,0,34,30 +chrX 4585914 . G GGGA 3273.97 . AC=3;AF=1.00;AN=3;AS_AltDP=74;AS_QD=31.67;DP=81;ExcessHet=0.0000;FS=0.000;MQ=59.94;QD=44.77;SOR=0.693;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:1337,0:0,0,15,15 1/1:0,44:44:99:1976,132,0:0,0,22,22 +chrX 4585952 . A C 2561 . AC=3;AF=1.00;AN=3;AS_AltDP=80;AS_QD=32.39;DP=87;ExcessHet=0.0000;FS=0.000;MQ=59.83;QD=32.39;SOR=0.908;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:1028,0:0,0,16,15 1/1:0,49:49:99:1563,146,0:0,0,20,29 +chrX 4586067 . G A 2062 . AC=3;AF=1.00;AN=3;AS_AltDP=63;AS_QD=32.69;BaseQRankSum=0;DP=64;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=32.69;ReadPosRankSum=0.237;SOR=0.273;VarDP=64 GT:AD:DP:GQ:PL:SB 1:1,21:22:99:695,0:0,1,12,9 1/1:0,42:42:99:1397,126,0:0,0,20,22 +chrX 4586139 . CAA C,CA 61.97 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=5,5;AS_QD=8.27,9.18;BaseQRankSum=2.611;DP=54;ExcessHet=0.0000;FS=30.584;MQ=58.19;MQRankSum=2.466;QD=6.31;ReadPosRankSum=-1.439;SOR=3.220;VarDP=16 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:18:47:15:0,47,47 0/2:6,5,5:16:10:.:101,10,280,0,37,66:0,6,9,1 +chrX 4586229 . G C 2618 . AC=3;AF=1.00;AN=3;AS_AltDP=85;AS_QD=31.15;DP=91;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.15;SOR=0.979;VarDP=85 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:754,0:0,0,10,14 1/1:0,61:61:99:1894,181,0:0,0,38,23 +chrX 4586766 . T C 2068 . AC=3;AF=1.00;AN=3;AS_AltDP=68;AS_QD=30.85;DP=70;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.85;SOR=0.752;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:893,0:0,0,13,16 1/1:0,39:39:99:1205,117,0:0,0,22,17 +chrX 4586824 . C CA 1170.97 . AC=3;AF=1.00;AN=3;AS_AltDP=54;AS_QD=22.41;DP=76;ExcessHet=0.0000;FS=0.000;MQ=59.66;QD=22.41;SOR=0.846;VarDP=54 GT:AD:DP:GQ:PL:SB 1:0,21:21:99:479,0:0,0,9,12 1/1:0,33:33:98:731,98,0:0,0,16,17 +chrX 4586850 . A G 2151 . AC=3;AF=1.00;AN=3;AS_AltDP=70;AS_QD=31.16;DP=73;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.16;SOR=0.941;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:779,0:0,0,8,16 1/1:0,46:46:99:1402,136,0:0,0,23,23 +chrX 4587463 . C G 2970 . AC=3;AF=1.00;AN=3;AS_AltDP=96;AS_QD=31.25;DP=99;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.25;SOR=0.823;VarDP=96 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:937,0:0,0,14,16 1/1:0,66:66:99:2063,197,0:0,0,31,35 +chrX 4587930 . C CT 1063.97 . AC=3;AF=1.00;AN=3;AS_AltDP=46;AS_QD=23.47;BaseQRankSum=-0.196;DP=63;ExcessHet=0.0000;FS=3.499;MQ=60.00;MQRankSum=0;QD=23.47;ReadPosRankSum=0.921;SOR=0.643;VarDP=47 GT:AD:DP:GQ:PL:SB 1:1,16:17:99:376,0:1,0,4,12 1/1:0,30:30:89:727,89,0:0,0,16,14 +chrX 4587965 . T A 966 . AC=2;AF=0.667;AN=3;AS_AltDP=36;AS_QD=22.13;BaseQRankSum=1.514;DP=48;ExcessHet=0.0000;FS=1.473;MQ=60.00;MQRankSum=0;QD=22.13;ReadPosRankSum=-0.058;SOR=0.404;VarDP=45 GT:AD:DP:GQ:PL:SB 1:1,19:20:99:570,0:0,1,8,11 0/1:8,17:25:99:426,0,194:3,5,8,9 +chrX 4588196 . GTT G 1548.97 . AC=3;AF=1.00;AN=3;AS_AltDP=44;AS_QD=28.62;DP=59;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=36.09;SOR=0.883;VarDP=44 GT:AD:DP:GQ:PL:SB 1:0,13:13:99:467,0:0,0,8,5 1/1:0,31:31:93:1121,93,0:0,0,16,15 +chrX 4588609 . C T 2293 . AC=3;AF=1.00;AN=3;AS_AltDP=69;AS_QD=33.67;DP=74;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.67;SOR=0.844;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:914,0:0,0,8,19 1/1:0,42:42:99:1409,126,0:0,0,24,18 +chrX 4588750 . A G 2594 . AC=3;AF=1.00;AN=3;AS_AltDP=81;AS_QD=32.40;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.40;SOR=0.995;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:839,0:0,0,13,13 1/1:0,55:55:99:1785,164,0:0,0,33,22 +chrX 4589691 . A G 2534 . AC=3;AF=1.00;AN=3;AS_AltDP=82;AS_QD=31.27;DP=87;ExcessHet=0.0000;FS=0.000;MQ=59.78;QD=31.27;SOR=1.085;VarDP=82 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:773,0:0,0,14,11 1/1:0,57:57:99:1791,170,0:0,0,34,23 +chrX 4589721 . C T 858 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=32.89;DP=89;ExcessHet=0.0000;FS=0.000;MQ=59.33;QD=32.89;SOR=0.765;VarDP=27 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,27:27:99:.:888,0:0,0,14,13 0/0:.:60:99:60:0,113,1578 +chrX 4590176 . C G 2977 . AC=3;AF=1.00;AN=3;AS_AltDP=92;AS_QD=32.33;BaseQRankSum=-0.383;DP=94;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=32.33;ReadPosRankSum=0.083;SOR=0.223;VarDP=93 GT:AD:DP:GQ:PL:SB 1:1,41:42:99:1320,0:0,1,25,16 1/1:0,51:51:99:1687,153,0:0,0,21,30 +chrX 4590395 . A G 2815 . AC=3;AF=1.00;AN=3;AS_AltDP=87;AS_QD=32.33;BaseQRankSum=-0.32;DP=90;ExcessHet=0.0000;FS=3.763;MQ=60.00;MQRankSum=0;QD=32.33;ReadPosRankSum=0.122;SOR=0.800;VarDP=88 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:1018,0:0,0,11,20 1/1:1,56:57:99:1827,136,0:1,0,25,31 +chrX 4590491 . T G 2505 . AC=3;AF=1.00;AN=3;AS_AltDP=77;AS_QD=32.92;DP=79;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.92;SOR=0.719;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:929,0:0,0,13,14 1/1:0,50:50:99:1606,149,0:0,0,26,24 +chrX 4590701 . TA T 1906.97 . AC=3;AF=1.00;AN=3;AS_AltDP=70;AS_QD=27.41;DP=80;ExcessHet=0.0000;FS=0.000;MQ=59.79;MQRankSum=6.71;QD=27.41;SOR=0.633;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:760,0:0,0,9,18 1/1:1,43:44:99:1186,105,0:0,1,15,28 +chrX 4591029 . G C 2645 . AC=3;AF=1.00;AN=3;AS_AltDP=81;AS_QD=33.02;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.02;SOR=0.934;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:933,0:0,0,14,14 1/1:0,53:53:99:1742,159,0:0,0,31,22 +chrX 4591962 . C A 2986 . AC=3;AF=1.00;AN=3;AS_AltDP=95;AS_QD=31.75;DP=100;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.75;SOR=0.757;VarDP=95 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:1002,0:0,0,9,23 1/1:0,63:63:99:2014,189,0:0,0,37,26 +chrX 4592372 . T C 2456 . AC=3;AF=1.00;AN=3;AS_AltDP=76;AS_QD=32.71;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.71;SOR=0.920;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:854,0:0,0,10,16 1/1:0,50:50:99:1632,150,0:0,0,24,26 +chrX 4592678 . T C 3702 . AC=3;AF=1.00;AN=3;AS_AltDP=117;AS_QD=31.90;DP=121;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.90;SOR=0.745;VarDP=117 GT:AD:DP:GQ:PL:SB 1:0,49:49:99:1556,0:0,0,24,25 1/1:0,68:68:99:2176,204,0:0,0,36,32 +chrX 4592696 . A G 3662 . AC=3;AF=1.00;AN=3;AS_AltDP=113;AS_QD=32.67;DP=120;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.67;SOR=0.822;VarDP=113 GT:AD:DP:GQ:PL:SB 1:0,49:49:99:1623,0:0,0,25,24 1/1:0,64:64:99:2069,192,0:0,0,35,29 +chrX 4592852 . A G 2816 . AC=3;AF=1.00;AN=3;AS_AltDP=89;AS_QD=31.98;DP=95;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.98;SOR=0.809;VarDP=89 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:948,0:0,0,17,12 1/1:0,60:60:99:1898,179,0:0,0,25,35 +chrX 4593014 . A AAT 4061.97 . AC=3;AF=1.00;AN=3;AS_AltDP=94;AS_QD=30.12;DP=99;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.63;SOR=0.874;VarDP=94 GT:AD:DP:GQ:PL:SB 1:0,38:38:99:1653,0:0,0,16,22 1/1:0,56:56:99:2448,168,0:0,0,27,29 +chrX 4593874 . CT C 871.97 . AC=3;AF=1.00;AN=3;AS_AltDP=40;AS_QD=22.78;DP=72;ExcessHet=0.0000;FS=0.000;MQ=59.12;QD=22.78;SOR=0.793;VarDP=40 GT:AD:DP:GQ:PL:SB 1:0,18:18:99:415,0:0,0,10,8 1/1:0,22:22:66:496,66,0:0,0,9,13 +chrX 4593921 . G T 1444 . AC=3;AF=1.00;AN=3;AS_AltDP=45;AS_QD=32.76;DP=45;ExcessHet=0.0000;FS=0.000;MQ=59.89;QD=32.76;SOR=0.737;VarDP=45 GT:AD:DP:GQ:PL:SB 1:0,20:20:99:665,0:0,0,12,8 1/1:0,25:25:75:809,75,0:0,0,11,14 +chrX 4594048 . A G 2599 . AC=3;AF=1.00;AN=3;AS_AltDP=83;AS_QD=31.67;DP=85;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.67;SOR=0.928;VarDP=83 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:864,0:0,0,13,13 1/1:0,57:57:99:1765,170,0:0,0,33,24 +chrX 4594246 . T C 2336 . AC=3;AF=1.00;AN=3;AS_AltDP=72;AS_QD=32.86;DP=74;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.86;SOR=0.869;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,22:22:99:734,0:0,0,13,9 1/1:0,50:50:99:1632,150,0:0,0,26,24 +chrX 4594355 . A G 2604 . AC=3;AF=1.00;AN=3;AS_AltDP=84;AS_QD=31.36;DP=87;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.36;SOR=0.897;VarDP=84 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:1007,0:0,0,17,15 1/1:0,52:52:99:1627,155,0:0,0,29,23 +chrX 4595050 . C A 2563 . AC=3;AF=1.00;AN=3;AS_AltDP=79;AS_QD=32.82;DP=82;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.82;SOR=0.824;VarDP=79 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:1062,0:0,0,16,16 1/1:0,47:47:99:1531,141,0:0,0,21,26 +chrX 4595902 . A G 1835 . AC=3;AF=1.00;AN=3;AS_AltDP=58;AS_QD=32.16;DP=61;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.16;SOR=0.836;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,18:18:99:602,0:0,0,8,10 1/1:0,40:40:99:1263,120,0:0,0,19,21 +chrX 4596061 . A AT 1699.97 . AC=3;AF=1.00;AN=3;AS_AltDP=69;AS_QD=25.20;DP=85;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=25.20;SOR=0.844;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:808,0:0,0,19,13 1/1:0,37:37:99:931,110,0:0,0,18,19 +chrX 4596875 . G A 2620 . AC=3;AF=1.00;AN=3;AS_AltDP=81;AS_QD=32.72;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.72;SOR=0.821;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:978,0:0,0,12,17 1/1:0,52:52:99:1672,156,0:0,0,31,21 +chrX 4597311 . A G 2744 . AC=3;AF=1.00;AN=3;AS_AltDP=85;AS_QD=32.64;DP=86;ExcessHet=0.0000;FS=0.000;MQ=59.73;QD=32.64;SOR=0.922;VarDP=85 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:1007,0:0,0,16,16 1/1:0,53:53:99:1767,159,0:0,0,22,31 +chrX 4597434 . CA C 1387.97 . AC=3;AF=1.00;AN=3;AS_AltDP=56;AS_QD=25.04;DP=78;ExcessHet=0.0000;FS=0.000;MQ=59.36;MQRankSum=0;QD=25.04;SOR=0.271;VarDP=57 GT:AD:DP:GQ:PL:SB 1:1,20:21:99:518,0:0,1,8,12 1/1:0,36:36:99:909,108,0:0,0,17,16 +chrX 4597715 . T G 2416 . AC=3;AF=1.00;AN=3;AS_AltDP=73;AS_QD=33.51;DP=76;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.51;SOR=1.340;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:987,0:0,0,14,15 1/1:0,44:44:99:1459,132,0:0,0,13,31 +chrX 4597774 . T C 2521 . AC=3;AF=1.00;AN=3;AS_AltDP=79;AS_QD=32.29;DP=82;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.29;SOR=0.881;VarDP=79 GT:AD:DP:GQ:PL:SB 1:0,36:36:99:1126,0:0,0,17,19 1/1:0,43:43:99:1425,129,0:0,0,19,24 +chrX 4598045 . CGTGTGT C 2506.97 . AC=3;AF=1.00;AN=3;AS_AltDP=57;AS_QD=26.67;DP=68;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.67;SOR=0.877;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,20:20:99:900,0:0,0,11,9 1/1:0,37:37:99:1646,112,0:0,0,20,17 +chrX 4598795 . T C 1795 . AC=3;AF=1.00;AN=3;AS_AltDP=56;AS_QD=32.59;DP=59;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.59;SOR=1.412;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,19:19:99:599,0:0,0,11,8 1/1:0,37:37:99:1226,111,0:0,0,25,12 +chrX 4599216 . C T 2740 . AC=3;AF=1.00;AN=3;AS_AltDP=83;AS_QD=32.98;BaseQRankSum=0;DP=86;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=32.98;ReadPosRankSum=-0.98;SOR=0.275;VarDP=84 GT:AD:DP:GQ:PL:SB 1:1,22:23:99:730,0:1,0,11,11 1/1:0,61:61:99:2040,183,0:0,0,33,28 +chrX 4599518 . A G 2446 . AC=3;AF=1.00;AN=3;AS_AltDP=77;AS_QD=32.16;DP=79;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.16;SOR=1.012;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:1007,0:0,0,19,13 1/1:0,45:45:99:1469,135,0:0,0,25,20 +chrX 4600424 . G A 2252 . AC=3;AF=1.00;AN=3;AS_AltDP=70;AS_QD=32.60;DP=73;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.60;SOR=0.693;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:794,0:0,0,12,14 1/1:0,44:44:99:1488,132,0:0,0,23,21 +chrX 4600632 . G A 870 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=16.67;BaseQRankSum=-0.604;DP=87;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=16.67;ReadPosRankSum=1.515;SOR=0.645;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,784 0/1:22,32:54:99:.:900,0,565:12,10,17,15 +chrX 4600793 . A T 2983 . AC=3;AF=1.00;AN=3;AS_AltDP=92;AS_QD=32.40;BaseQRankSum=-0.457;DP=95;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=32.40;ReadPosRankSum=0.026;SOR=0.349;VarDP=93 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:919,0:0,0,12,15 1/1:1,65:66:99:2094,164,0:0,1,28,37 +chrX 4601488 . G A 2810 . AC=3;AF=1.00;AN=3;AS_AltDP=83;AS_QD=34.22;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=34.22;SOR=0.766;VarDP=83 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:1147,0:0,0,16,17 1/1:0,50:50:99:1693,150,0:0,0,24,26 +chrX 4601647 . T C 2966 . AC=3;AF=1.00;AN=3;AS_AltDP=96;AS_QD=31.21;DP=97;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.21;SOR=0.693;VarDP=96 GT:AD:DP:GQ:PL:SB 1:0,36:36:99:1116,0:0,0,16,20 1/1:0,60:60:99:1880,180,0:0,0,32,28 +chrX 4602083 . AT A 2986.97 . AC=3;AF=1.00;AN=3;AS_AltDP=69;AS_QD=24.33;BaseQRankSum=-0.423;DP=80;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=43.23;ReadPosRankSum=1.196;SOR=0.268;VarDP=70 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,28:29:99:.:.:1210,0:.:1,0,14,14 1|1:0,41:41:99:0|1:4602083_AT_A:1816,123,0:4602083:0,0,20,21 +chrX 4602103 . C T 3544 . AC=3;AF=1.00;AN=3;AS_AltDP=85;AS_QD=29.33;DP=85;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=42.05;SOR=0.765;VarDP=85 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,31:31:99:.:.:1335,0:.:0,0,16,15 1|1:0,54:54:99:0|1:4602083_AT_A:2239,162,0:4602083:0,0,28,26 +chrX 4602910 . T C 2017 . AC=3;AF=1.00;AN=3;AS_AltDP=63;AS_QD=32.49;DP=67;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.49;SOR=1.092;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,22:22:99:693,0:0,0,11,11 1/1:0,41:41:99:1354,122,0:0,0,15,26 +chrX 4602980 . A T 2200 . AC=3;AF=1.00;AN=3;AS_AltDP=66;AS_QD=33.79;DP=69;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.79;SOR=0.693;VarDP=66 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:873,0:0,0,13,13 1/1:0,40:40:99:1357,120,0:0,0,20,20 +chrX 4603038 . C A 2427 . AC=3;AF=1.00;AN=3;AS_AltDP=75;AS_QD=32.76;DP=78;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.76;SOR=1.164;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:953,0:0,0,19,10 1/1:0,46:46:99:1504,138,0:0,0,26,20 +chrX 4603425 . T C 2630 . AC=3;AF=1.00;AN=3;AS_AltDP=83;AS_QD=32.05;DP=85;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.05;SOR=0.818;VarDP=83 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:812,0:0,0,12,15 1/1:0,56:56:99:1848,168,0:0,0,27,29 +chrX 4603767 . A T 3177 . AC=3;AF=1.00;AN=3;AS_AltDP=94;AS_QD=34.12;DP=97;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=34.12;SOR=0.976;VarDP=94 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:1033,0:0,0,20,10 1/1:0,64:64:99:2174,193,0:0,0,33,31 +chrX 4603914 . G A,GA 610 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=3,26;AS_QD=0.00,16.00;BaseQRankSum=-0.478;DP=92;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.88;ReadPosRankSum=1.712;SOR=0.770;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:34:99:34:0,913,913 0/2:14,3,26:43:99:.:640,668,1391,0,332,322:8,6,17,12 +chrX 4603996 . T C 3115 . AC=3;AF=1.00;AN=3;AS_AltDP=98;AS_QD=32.09;DP=102;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.09;SOR=0.914;VarDP=98 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:1002,0:0,0,17,13 1/1:0,68:68:99:2143,203,0:0,0,37,31 +chrX 4604254 . T C 2387 . AC=3;AF=1.00;AN=3;AS_AltDP=74;AS_QD=32.66;DP=77;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.66;SOR=0.927;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:998,0:0,0,17,13 1/1:0,44:44:99:1419,131,0:0,0,16,28 +chrX 4605113 . T TTATC 3178.97 . AC=3;AF=1.00;AN=3;AS_AltDP=72;AS_QD=27.70;DP=77;ExcessHet=0.0000;FS=0.000;MQ=59.69;QD=44.69;SOR=1.148;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,37:37:99:1665,0:0,0,19,18 1/1:0,35:35:99:1553,105,0:0,0,24,11 +chrX 4605203 . CATTT C 908.97 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=21.55;BaseQRankSum=-0.46;DP=75;ExcessHet=0.0000;FS=2.744;MQ=60.00;MQRankSum=0;QD=21.55;ReadPosRankSum=-0.305;SOR=1.232;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,768 0/1:20,24:44:99:.:948,0,735:12,8,17,7 +chrX 4605637 . G C 2449 . AC=3;AF=1.00;AN=3;AS_AltDP=81;AS_QD=29.87;BaseQRankSum=2.186;DP=88;ExcessHet=0.0000;FS=3.047;MQ=60.00;MQRankSum=0;QD=29.87;ReadPosRankSum=0.991;SOR=0.121;VarDP=83 GT:AD:DP:GQ:PL:SB 1:1,27:28:99:767,0:0,1,13,14 1/1:1,54:55:99:1712,154,0:0,1,26,28 +chrX 4605659 . A G 2404 . AC=3;AF=1.00;AN=3;AS_AltDP=78;AS_QD=31.21;DP=81;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.21;SOR=0.798;VarDP=78 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:739,0:0,0,12,11 1/1:0,55:55:99:1695,164,0:0,0,25,30 +chrX 4605948 . G A 2768 . AC=3;AF=1.00;AN=3;AS_AltDP=84;AS_QD=33.31;DP=85;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.31;SOR=1.139;VarDP=84 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:1047,0:0,0,12,19 1/1:0,53:53:99:1751,159,0:0,0,22,31 +chrX 4606287 . CAAAAAA CA,C 820.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=16,10;AS_QD=31.42,29.25;BaseQRankSum=-0.578;DP=62;ExcessHet=0.0000;FS=2.418;MQ=58.36;MQRankSum=-0.509;QD=29.66;ReadPosRankSum=-0.193;SOR=0.799;VarDP=29 GT:AD:DP:GQ:PL:SB 1:0,9,0:9:99:316,0,316:0,0,5,4 1/2:3,7,10:20:70:544,105,114,70,0,184:1,2,10,7 +chrX 4606806 . A T 2861 . AC=3;AF=1.00;AN=3;AS_AltDP=88;AS_QD=32.85;DP=91;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.85;SOR=0.739;VarDP=88 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:1031,0:0,0,14,17 1/1:0,57:57:99:1860,171,0:0,0,29,28 +chrX 4607630 . A T 2678 . AC=3;AF=1.00;AN=3;AS_AltDP=82;AS_QD=33.02;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.02;SOR=0.693;VarDP=82 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:926,0:0,0,17,12 1/1:0,53:53:99:1782,159,0:0,0,24,29 +chrX 4608054 . C T 402 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=8.82;BaseQRankSum=-1.942;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=8.82;ReadPosRankSum=0.934;SOR=0.730;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:34:99:34:0,686 0/1:30,19:49:99:.:432,0,876:13,17,8,11 +chrX 4608165 . G A 2337 . AC=3;AF=1.00;AN=3;AS_AltDP=71;AS_QD=33.34;DP=74;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.34;SOR=0.721;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:1022,0:0,0,13,18 1/1:0,40:40:99:1345,120,0:0,0,23,17 +chrX 4608484 . T C 2985 . AC=3;AF=1.00;AN=3;AS_AltDP=95;AS_QD=31.74;DP=99;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.74;SOR=0.802;VarDP=95 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:937,0:0,0,13,17 1/1:0,65:65:99:2078,195,0:0,0,32,33 +chrX 4608740 . G A 2312 . AC=3;AF=1.00;AN=3;AS_AltDP=71;AS_QD=32.99;DP=74;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.99;SOR=0.779;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:1047,0:0,0,17,15 1/1:0,39:39:99:1295,117,0:0,0,20,19 +chrX 4608847 . ATACATATATTTGCTATTAGATAG A 1681.97 . AC=3;AF=1.00;AN=3;AS_AltDP=40;AS_QD=30.43;DP=44;ExcessHet=0.0000;FS=0.000;MQ=57.89;QD=43.03;SOR=1.788;VarDP=40 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,20:20:99:.:.:859,0:.:0,0,13,7 1|1:0,20:20:61:0|1:4608847_ATACATATATTTGCTATTAGATAG_A:862,61,0:4608847:0,0,15,5 +chrX 4608878 . ACAAATATATTTGCTATTAGATAGCAAATATACAAATATATTTGCTATTAGATAGCAAATATACAAATATATTTGCTATTAGATAGCAAATATACAAATATGTTTGCTATTAGATAGCAAATATACAAATATGTTTGCTATTAGATAGCAAATATACAAATATG A 457.97 . AC=3;AF=1.00;AN=3;AS_AltDP=36;AS_QD=13.43;DP=67;ExcessHet=0.0000;FS=4.890;MQ=57.51;MQRankSum=-0.171;QD=13.43;SOR=1.598;VarDP=37 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,18:18:99:.:.:358,0:.:0,0,12,6 1|1:1,18:19:26:0|1:4608847_ATACATATATTTGCTATTAGATAG_A:139,26,0:4608847:0,1,13,5 +chrX 4609193 . TTATA T 2696.97 . AC=3;AF=1.00;AN=3;AS_AltDP=61;AS_QD=28.82;DP=77;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.85;SOR=0.941;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,21:21:99:946,0:0,0,11,10 1/1:0,40:40:99:1790,121,0:0,0,16,24 +chrX 4610110 . CT C 1257.97 . AC=2;AF=0.667;AN=3;AS_AltDP=34;AS_QD=23.58;BaseQRankSum=-1.028;DP=59;ExcessHet=0.0000;FS=5.768;MQ=58.81;MQRankSum=-2.365;QD=23.58;ReadPosRankSum=-0.184;SOR=1.119;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,18:18:99:.:.:749,0:.:0,0,9,9 0|1:21,16:37:99:0|1:4610110_CT_C:548,0,818:4610110:12,9,4,12 +chrX 4610126 . C CTT 1350.97 . AC=2;AF=0.667;AN=3;AS_AltDP=36;AS_QD=23.56;BaseQRankSum=-0.244;DP=59;ExcessHet=0.0000;FS=9.333;MQ=58.62;MQRankSum=-2.325;QD=23.56;ReadPosRankSum=-1.028;SOR=1.028;VarDP=59 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,18:18:99:.:.:764,0:.:0,0,9,9 0|1:23,18:41:99:0|1:4610110_CT_C:626,0,912:4610110:14,9,5,13 +chrX 4610150 . T TTC,TTCTTTC,TTCTTTCTTTCTTTCTTTC,TTCTTTCTTTCTTTC 935.97 . AC=2,0,0,0;AF=0.667,0.00,0.00,0.00;AN=3;AS_AltDP=11,2,0,0;AS_QD=28.68,16.64,13.65,5.96;BaseQRankSum=1.061;DP=48;ExcessHet=0.0000;FS=14.209;MQ=57.76;MQRankSum=-3.207;QD=27.08;ReadPosRankSum=-0.204;SOR=1.440;VarDP=36 GT:AD:DP:GQ:PL:SB 1:0,4,2,0,0:6:99:547,0,131,233,287:0,0,2,4 0/1:23,7,0,0,0:30:99:428,0,930,402,963,1350,402,963,1350,1350,291,946,1252,1252,1236:16,7,2,5 +chrX 4610168 . C T 597 . AC=2;AF=0.667;AN=3;AS_AltDP=17;AS_QD=15.68;BaseQRankSum=0.482;DP=54;ExcessHet=0.0000;FS=12.712;MQ=58.33;MQRankSum=-2.674;QD=15.68;ReadPosRankSum=-0.102;SOR=1.612;VarDP=40 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,7:7:99:.:.:295,0:.:0,0,3,4 0|1:23,10:33:99:0|1:4610110_CT_C:332,0,936:4610110:15,8,2,8 +chrX 4610176 . T TTC 70.97 . AC=1;AF=0.333;AN=3;AS_AltDP=5;AS_QD=15.71;BaseQRankSum=0.566;DP=52;ExcessHet=0.0000;FS=0.000;MQ=57.16;MQRankSum=0.967;QD=15.71;ReadPosRankSum=-0.366;SOR=1.022;VarDP=7 GT:AD:DP:GQ:MIN_DP:PL:SB 1:2,5:7:99:.:110,0:1,1,2,3 0/0:.:39:90:39:0,90,1232 +chrX 4610178 . GTCTCTC G,TTCTCTC,CTCTCTC 1003 . AC=0,1,1;AF=0.00,0.333,0.333;AN=3;AS_AltDP=0,5,12;AS_QD=16.24,19.50,27.52;BaseQRankSum=2.107;DP=56;ExcessHet=0.0000;FS=5.287;MQ=57.99;MQRankSum=-2.304;QD=30.38;ReadPosRankSum=0.075;SOR=1.706;VarDP=34 GT:AD:DP:GQ:PL:SB 2:0,0,5,2:7:99:429,362,0,235:0,0,3,4 0/3:17,0,0,10:27:99:604,395,1125,552,1143,1361,0,697,829,875:9,8,2,8 +chrX 4610182 . C *,CTT 570.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=0,10;AS_QD=0.00,22.59;BaseQRankSum=0.752;DP=51;ExcessHet=0.0000;FS=5.287;MQ=58.63;MQRankSum=-2.304;QD=22.59;ReadPosRankSum=0;SOR=1.706;VarDP=27 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,0,0:7:19:.:.:429,362,381:.:0,0,3,4 0|2:17,0,10:27:99:0|1:4610110_CT_C:610,398,1087,0,695,791:4610110:9,8,2,8 +chrX 4610184 . C *,CTTTCTTTG,CTCTTTCTTTG,CTTTG 1002.97 . AC=0,1,0,1;AF=0.00,0.333,0.00,0.333;AN=3;AS_AltDP=0,5,2,10;AS_QD=0.00,19.50,10.74,22.70;BaseQRankSum=0.312;DP=51;ExcessHet=0.0000;FS=5.287;MQ=57.79;MQRankSum=-2.304;QD=30.65;ReadPosRankSum=0.075;SOR=1.706;VarDP=34 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 2:0,0,5,2,0:7:99:.:.:429,317,0,225,372:.:0,0,3,4 0|4:17,0,0,0,10:27:99:0|1:4610110_CT_C:613,401,1089,549,1118,1280,549,1118,1280,1280,0,695,759,759,750:4610110:9,8,2,8 +chrX 4619160 . C T 1583 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=21.51;BaseQRankSum=0.355;DP=78;ExcessHet=0.0000;FS=13.917;MQ=60.00;MQRankSum=0;QD=21.51;ReadPosRankSum=-1.034;SOR=1.230;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,35:35:99:1130,0:0,0,14,21 0/1:22,18:40:99:483,0,585:14,8,5,13 +chrX 4620810 . TA T 1598.97 . AC=2;AF=0.667;AN=3;AS_AltDP=42;AS_QD=27.76;BaseQRankSum=0.749;DP=77;ExcessHet=0.0000;FS=10.755;MQ=60.00;MQRankSum=0;QD=27.76;ReadPosRankSum=0.414;SOR=0.665;VarDP=59 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,21:21:99:.:.:834,0:.:0,0,11,10 0|1:17,21:38:99:0|1:4620810_TA_T:804,0,632:4620810:5,12,13,8 +chrX 4620834 . T C 1790 . AC=2;AF=0.667;AN=3;AS_AltDP=49;AS_QD=26.76;BaseQRankSum=-2.162;DP=69;ExcessHet=0.0000;FS=15.096;MQ=60.00;MQRankSum=0;QD=26.76;ReadPosRankSum=1.439;SOR=0.641;VarDP=68 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,27:27:99:.:.:1015,0:.:0,0,15,12 0|1:19,22:41:99:0|1:4620810_TA_T:805,0,700:4620810:5,14,13,9 +chrX 4625742 . TA T 500.97 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=11.74;BaseQRankSum=0.187;DP=81;ExcessHet=0.0000;FS=6.311;MQ=60.00;MQRankSum=0;QD=11.74;ReadPosRankSum=-0.099;SOR=1.455;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,372 0/1:22,24:46:99:.:540,0,480:12,10,8,16 +chrX 4626261 . C CATATAT,CATAT 836.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=7,14;AS_QD=29.80,34.00;BaseQRankSum=-1.095;DP=42;ExcessHet=0.0000;FS=0.000;MQ=59.20;MQRankSum=-0.309;QD=36.50;ReadPosRankSum=-1.578;SOR=0.560;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,7,0:7:99:298,0,299:0,0,5,2 0/2:3,0,14:17:84:578,588,714,0,127,84:2,1,7,7 +chrX 4633710 . T C 1649 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=20.48;BaseQRankSum=-0.387;DP=84;ExcessHet=0.0000;FS=0.926;MQ=60.00;MQRankSum=0;QD=20.48;ReadPosRankSum=-0.156;SOR=0.539;VarDP=82 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:972,0:0,0,16,14 0/1:26,26:52:99:707,0,717:17,9,18,8 +chrX 4636135 . T TTG 1358.97 . AC=2;AF=0.667;AN=3;AS_AltDP=43;AS_QD=24.53;BaseQRankSum=0.79;DP=78;ExcessHet=0.0000;FS=4.355;MQ=59.75;MQRankSum=-0.819;QD=24.53;ReadPosRankSum=-0.438;SOR=0.907;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:860,0:0,0,10,15 0/1:14,18:32:99:538,0,405:8,6,8,10 +chrX 4637208 . TAAAAG T 2020.97 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=27.84;BaseQRankSum=-0.389;DP=78;ExcessHet=0.0000;FS=16.353;MQ=60.00;MQRankSum=0;QD=27.84;ReadPosRankSum=0.798;SOR=1.258;VarDP=74 GT:AD:DP:GQ:PL:SB 1:1,25:26:99:1060,0:1,0,19,6 0/1:22,26:48:99:1000,0,835:7,15,14,12 +chrX 4637830 . C T 1953 . AC=2;AF=0.667;AN=3;AS_AltDP=68;AS_QD=22.53;BaseQRankSum=-0.095;DP=92;ExcessHet=0.0000;FS=5.155;MQ=60.00;MQRankSum=0;QD=22.53;ReadPosRankSum=0.075;SOR=1.080;VarDP=88 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:841,0:0,0,11,15 0/1:20,42:62:99:1142,0,411:11,9,16,26 +chrX 4637949 . G T 428 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=10.41;BaseQRankSum=2.278;DP=76;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=10.41;ReadPosRankSum=0.615;SOR=0.745;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,540 0/1:27,17:44:99:.:458,0,721:13,14,9,8 +chrX 4639224 . A G 1763 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=20.38;BaseQRankSum=-0.752;DP=91;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=20.38;ReadPosRankSum=0.379;SOR=0.693;VarDP=88 GT:AD:DP:GQ:PL:SB 1:0,37:37:99:1221,0:0,0,17,20 0/1:28,23:51:99:572,0,785:14,14,13,10 +chrX 4642006 . C CA 395.97 . AC=3;AF=1.00;AN=3;AS_AltDP=27;AS_QD=15.54;BaseQRankSum=-0.319;DP=64;ExcessHet=0.0000;FS=4.058;MQ=59.00;MQRankSum=-0.554;QD=15.54;ReadPosRankSum=-0.61;SOR=1.074;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,13:13:99:193,0:0,0,5,8 1/1:1,14:15:24:242,24,0:1,0,5,9 +chrX 4642919 . T C 1250 . AC=2;AF=0.667;AN=3;AS_AltDP=45;AS_QD=16.84;BaseQRankSum=-1.123;DP=78;ExcessHet=0.0000;FS=0.886;MQ=60.00;MQRankSum=0;QD=16.84;ReadPosRankSum=0.561;SOR=0.571;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,20:20:99:620,0:0,0,10,10 0/1:31,25:56:99:660,0,889:19,12,16,9 +chrX 4650039 . CAAAAAAAAAAAAAAA CAAAAAAAAAAAAAAAAA,C 1226.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=21,21;AS_QD=12.42,22.75;BaseQRankSum=0.029;DP=79;ExcessHet=0.0000;FS=1.131;MQ=59.01;MQRankSum=1.738;QD=22.21;ReadPosRankSum=0.543;SOR=0.534;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:447,0,447:0,0,12,9 0/2:15,0,21:36:99:819,864,1460,0,596,530:9,6,11,10 +chrX 4650702 . CTTTT C,CTTTTTTTTTTTTTTTTTTTT 548.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=5,12;AS_QD=9.18,18.00;BaseQRankSum=0.146;DP=64;ExcessHet=0.0000;FS=5.620;MQ=59.74;MQRankSum=0;QD=20.28;ReadPosRankSum=-0.107;SOR=1.253;VarDP=29 GT:AD:DP:GQ:PL:SB 1:3,5,0:8:99:156,0,226:2,1,2,3 0/2:9,0,12:21:99:432,462,843,0,381,345:3,6,9,3 +chrX 4650948 . G A 1641 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=19.89;BaseQRankSum=-0.365;DP=91;ExcessHet=0.0000;FS=0.885;MQ=59.82;MQRankSum=0;QD=19.89;ReadPosRankSum=0.97;SOR=0.560;VarDP=84 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:1017,0:0,0,14,18 0/1:26,26:52:99:654,0,644:14,12,15,11 +chrX 4651798 . T A,TA 1063 . AC=2,0;AF=0.667,0.00;AN=3;AS_AltDP=43,0;AS_QD=15.39,0.00;BaseQRankSum=-0.693;DP=79;ExcessHet=0.0000;FS=0.926;MQ=60.00;MQRankSum=0;QD=15.39;ReadPosRankSum=-0.733;SOR=0.889;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,21,0:21:99:613,0,696:0,0,9,12 0/1:28,22,0:50:99:480,0,806,593,782,1457:13,15,9,13 +chrX 4653298 . T A 675 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=13.30;BaseQRankSum=-0.761;DP=84;ExcessHet=0.0000;FS=5.608;MQ=60.00;MQRankSum=0;QD=13.30;ReadPosRankSum=-0.739;SOR=1.115;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,581 0/1:27,26:53:99:.:705,0,730:12,15,16,10 +chrX 4653497 . CTTTTTTTTTTTTTTTTTTTT C 1626.97 . AC=2;AF=0.667;AN=3;AS_AltDP=40;AS_QD=27.77;BaseQRankSum=1.213;DP=78;ExcessHet=0.0000;FS=1.053;MQ=58.96;MQRankSum=2.538;QD=27.77;ReadPosRankSum=1.472;SOR=0.917;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,17:17:99:758,0:0,0,11,6 0/1:20,23:43:99:908,0,769:11,9,13,10 +chrX 4654161 . T A 2097 . AC=2;AF=0.667;AN=3;AS_AltDP=70;AS_QD=22.39;BaseQRankSum=-0.181;DP=95;ExcessHet=0.0000;FS=9.910;MQ=60.00;MQRankSum=0;QD=22.39;ReadPosRankSum=0.504;SOR=0.740;VarDP=95 GT:AD:DP:GQ:PL:SB 1:0,43:43:99:1405,0:0,0,14,29 0/1:25,27:52:99:722,0,663:16,9,16,11 +chrX 4654728 . A T 2379 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=32.12;BaseQRankSum=0.132;DP=79;ExcessHet=0.0000;FS=1.029;MQ=60.00;MQRankSum=0;QD=32.12;ReadPosRankSum=0.752;SOR=0.540;VarDP=75 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,31:31:99:.:.:1373,0:.:0,0,19,12 0|1:18,26:44:99:0|1:4654728_A_T:1036,0,637:4654728:11,7,13,13 +chrX 4654738 . T C 2477 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=33.43;BaseQRankSum=-2.746;DP=75;ExcessHet=0.0000;FS=2.504;MQ=60.00;MQRankSum=0;QD=33.43;ReadPosRankSum=-0.357;SOR=0.364;VarDP=75 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,32:32:99:.:.:1408,0:.:0,0,20,12 0|1:15,28:43:99:0|1:4654728_A_T:1099,0,546:4654728:10,5,13,15 +chrX 4662148 . T G 591 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=11.72;BaseQRankSum=0.587;DP=86;ExcessHet=0.0000;FS=3.854;MQ=60.00;MQRankSum=0;QD=11.72;ReadPosRankSum=1.836;SOR=1.058;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,219 0/1:28,25:53:99:.:621,0,693:13,15,15,10 +chrX 4665634 . A T 676 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=11.97;BaseQRankSum=-1.583;DP=90;ExcessHet=0.0000;FS=2.169;MQ=60.00;MQRankSum=0;QD=11.97;ReadPosRankSum=0.397;SOR=0.446;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,219 0/1:33,26:59:99:.:706,0,969:19,14,13,13 +chrX 4676755 . C CT 329.97 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=9.46;BaseQRankSum=-0.137;DP=84;ExcessHet=0.0000;FS=0.000;MQ=59.70;MQRankSum=-0.923;QD=9.46;ReadPosRankSum=-0.9;SOR=0.776;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,219 0/1:19,20:39:99:.:369,0,346:8,11,8,12 +chrX 4677149 . A AAT,AATATATATAT 374.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=8,6;AS_QD=10.85,10.94;BaseQRankSum=0;DP=52;ExcessHet=0.0000;FS=6.329;MQ=58.30;MQRankSum=-2.523;QD=15.92;ReadPosRankSum=0.047;SOR=1.687;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,8,0:8:99:217,0,217:0,0,6,2 0/2:12,0,6:18:99:197,234,727,0,493,475:5,7,4,2 +chrX 4684113 . TATATATAC T 38.97 . AC=1;AF=0.333;AN=3;AS_AltDP=3;AS_QD=19.50;BaseQRankSum=0;DP=28;ExcessHet=0.0000;FS=0.000;MQ=58.70;MQRankSum=0;QD=19.50;ReadPosRankSum=0.319;SOR=0.916;VarDP=4 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,3:4:78:.:78,0:0,1,2,1 0/0:.:18:21:15:0,21,315 +chrX 4684119 . T *,TAC 204.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=0,10;AS_QD=0.00,15.25;BaseQRankSum=-0.645;DP=33;ExcessHet=0.0000;FS=1.922;MQ=57.39;MQRankSum=0;QD=15.25;ReadPosRankSum=0.054;SOR=1.061;VarDP=16 GT:AD:DP:GQ:PL:SB 1:1,3,0:4:78:78,0,104:0,1,2,1 0/2:6,0,10:16:99:244,262,435,0,173,143:3,3,6,4 +chrX 4686599 . A C 781 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=13.75;BaseQRankSum=-0.594;DP=92;ExcessHet=0.0000;FS=2.177;MQ=59.83;MQRankSum=1.086;QD=13.75;ReadPosRankSum=-0.205;SOR=0.791;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,164 0/1:28,31:59:99:.:811,0,757:15,13,14,17 +chrX 4691554 . T C 1468 . AC=2;AF=0.667;AN=3;AS_AltDP=49;AS_QD=19.45;BaseQRankSum=0.757;DP=79;ExcessHet=0.0000;FS=1.975;MQ=60.00;MQRankSum=0;QD=19.45;ReadPosRankSum=-0.55;SOR=0.446;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:1079,0:0,0,18,14 0/1:28,17:45:99:419,0,754:17,11,8,9 +chrX 4692198 . CT C,CTT 65.97 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=4,9;AS_QD=0.25,8.08;BaseQRankSum=-0.985;DP=73;ExcessHet=0.0000;FS=5.315;MQ=58.95;MQRankSum=-0.416;QD=6.18;ReadPosRankSum=1.153;SOR=0.916;VarDP=17 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:25:99:25:0,540,540 0/2:4,4,9:17:22:.:105,103,381,0,22,66:1,3,8,5 +chrX 4692319 . T C 427 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=13.85;BaseQRankSum=0;DP=62;ExcessHet=0.0000;FS=0.000;MQ=58.18;MQRankSum=0.095;QD=13.85;ReadPosRankSum=1.082;SOR=0.836;VarDP=33 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:90:28:0,90 0/1:17,16:33:99:.:457,0,478:7,10,6,10 +chrX 4694734 . C A 1565 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=19.45;BaseQRankSum=0.673;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=19.45;ReadPosRankSum=-1.247;SOR=0.767;VarDP=82 GT:AD:DP:GQ:PL:SB 1:0,35:35:99:1086,0:0,0,18,17 0/1:28,19:47:99:509,0,802:14,14,10,9 +chrX 4696131 . ATG A 425.97 . AC=2;AF=0.667;AN=3;AS_AltDP=17;AS_QD=14.53;BaseQRankSum=0.337;DP=47;ExcessHet=0.0000;FS=1.340;MQ=59.72;MQRankSum=-1.205;QD=14.53;ReadPosRankSum=-0.502;SOR=0.473;VarDP=32 GT:AD:DP:GQ:PL:SB 1:0,8:8:99:265,0:0,0,3,5 0/1:15,9:24:99:200,0,401:9,6,6,3 +chrX 4696163 . GTATATA GTA,G 396.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=6,7;AS_QD=18.17,16.77;BaseQRankSum=-0.83;DP=40;ExcessHet=0.0000;FS=4.947;MQ=59.67;MQRankSum=0.812;QD=22.95;ReadPosRankSum=0.235;SOR=2.147;VarDP=19 GT:AD:DP:GQ:PL:SB 1:1,6,0:7:99:218,0,228:0,1,0,6 0/2:5,0,7:12:78:218,232,331,0,99,78:3,2,3,4 +chrX 4696971 . A AT 1727.97 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=20.31;BaseQRankSum=1.248;DP=92;ExcessHet=0.0000;FS=0.834;MQ=59.83;MQRankSum=0;QD=20.31;ReadPosRankSum=-0.137;SOR=0.571;VarDP=87 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:922,0:0,0,15,11 0/1:32,29:61:99:845,0,959:14,18,11,18 +chrX 4698388 . T C 1355 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=17.99;BaseQRankSum=1.876;DP=78;ExcessHet=0.0000;FS=4.790;MQ=60.00;MQRankSum=0;QD=17.99;ReadPosRankSum=0.04;SOR=0.682;VarDP=77 GT:AD:DP:GQ:PL:SB 1:2,29:31:99:853,0:1,1,13,16 0/1:22,24:46:99:532,0,603:13,9,11,13 +chrX 4698782 . AT A 1433.97 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=20.75;BaseQRankSum=-2.228;DP=77;ExcessHet=0.0000;FS=2.273;MQ=60.00;MQRankSum=0;QD=20.75;ReadPosRankSum=0.031;SOR=0.412;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,22:22:99:686,0:0,0,13,9 0/1:19,30:49:99:787,0,443:12,7,15,15 +chrX 4699356 . C CTG 840.97 . AC=2;AF=0.667;AN=3;AS_AltDP=36;AS_QD=16.60;BaseQRankSum=0.492;DP=79;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=16.60;ReadPosRankSum=1.514;SOR=0.693;VarDP=53 GT:AD:DP:GQ:PL:SB 1:0,20:20:99:534,0:0,0,12,8 0/1:17,16:33:99:346,0,393:9,8,7,9 +chrX 4699615 . A G 1675 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=20.06;BaseQRankSum=-0.296;DP=87;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=20.06;ReadPosRankSum=-0.87;SOR=0.662;VarDP=85 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:953,0:0,0,17,11 0/1:28,29:57:99:752,0,742:15,13,13,16 +chrX 4700004 . G A 1576 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=18.25;BaseQRankSum=0.118;DP=89;ExcessHet=0.0000;FS=0.884;MQ=60.00;MQRankSum=0;QD=18.25;ReadPosRankSum=-0.561;SOR=0.535;VarDP=88 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:916,0:0,0,19,11 0/1:31,27:58:99:690,0,804:21,10,17,10 +chrX 4700154 . C CA 767.97 . AC=2;AF=0.667;AN=3;AS_AltDP=33;AS_QD=14.16;BaseQRankSum=-0.302;DP=69;ExcessHet=0.0000;FS=2.297;MQ=60.00;MQRankSum=0;QD=14.16;ReadPosRankSum=-0.331;SOR=1.179;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,17:17:99:478,0:0,0,8,9 0/1:24,16:40:99:329,0,556:12,12,5,11 +chrX 4700691 . T C 1398 . AC=2;AF=0.667;AN=3;AS_AltDP=50;AS_QD=19.04;BaseQRankSum=-1.646;DP=79;ExcessHet=0.0000;FS=6.465;MQ=60.00;MQRankSum=0;QD=19.04;ReadPosRankSum=0.744;SOR=0.414;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:833,0:0,0,15,12 0/1:25,23:48:99:595,0,705:16,9,9,14 +chrX 4700782 . A G 934 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=17.85;BaseQRankSum=-0.817;DP=87;ExcessHet=0.0000;FS=5.994;MQ=60.00;MQRankSum=0;QD=17.85;ReadPosRankSum=-0.671;SOR=0.311;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,759 0/1:19,35:54:99:.:964,0,468:6,13,18,17 +chrX 4702131 . T C 947 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=31.52;DP=84;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.52;SOR=1.044;VarDP=31 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,31:31:99:.:977,0:0,0,13,18 0/0:.:53:94:53:0,94,1350 +chrX 4702307 . T TAGAG,TATAGAG,TAG,TATATAG 2531.97 . AC=0,1,0,2;AF=0.00,0.333,0.00,0.667;AN=3;AS_AltDP=0,15,0,41;AS_QD=30.60,28.91,24.96,33.97;DP=78;ExcessHet=0.0000;FS=0.000;MQ=59.93;QD=45.91;SOR=0.693;VarDP=56 GT:AD:DP:GQ:PL:SB 2:0,0,15,0,0:15:99:860,533,0,697,697:0,0,7,8 4/4:0,0,0,0,41:41:99:1711,1705,1864,1705,1864,1864,1641,1857,1857,2016,141,155,155,138,0:0,0,21,20 +chrX 4703279 . A ATTTT,ATTTTTTT 634.97 . AC=1,0;AF=0.333,0.00;AN=3;AS_AltDP=5,5;AS_QD=29.25,26.02;DP=78;ExcessHet=0.0000;FS=0.000;MQ=56.89;QD=67.40;SOR=1.609;VarDP=10 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,5,5:10:84:.:674,0,84:0,0,3,7 0/0:.:56:46:56:0,46,972,46,972,972 +chrX 4703287 . A T 759 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=28.49;DP=74;ExcessHet=0.0000;FS=0.000;MQ=56.17;QD=43.83;SOR=0.693;VarDP=18 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,18:18:99:.:789,0:0,0,9,9 0/0:.:56:46:56:0,46,972 +chrX 4703409 . G A 1286 . AC=3;AF=1.00;AN=3;AS_AltDP=39;AS_QD=33.74;DP=40;ExcessHet=0.0000;FS=0.000;MQ=31.74;QD=33.74;SOR=1.387;VarDP=39 GT:AD:DP:GQ:PL:SB 1:0,14:14:99:475,0:0,0,9,5 1/1:0,25:25:75:841,75,0:0,0,16,9 +chrX 4704074 . T C 589 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=28.14;DP=53;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=28.14;SOR=0.693;VarDP=22 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,22:22:99:.:619,0:0,0,11,11 0/0:.:29:35:28:0,35,805 +chrX 4704101 . A C 749 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=32.46;DP=53;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.46;SOR=1.051;VarDP=24 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,24:24:99:.:779,0:0,0,10,14 0/0:.:29:35:28:0,35,805 +chrX 4704148 . AAT A 3239.97 . AC=3;AF=1.00;AN=3;AS_AltDP=83;AS_QD=27.65;DP=99;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=39.51;SOR=0.717;VarDP=83 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:917,0:0,0,12,11 1/1:0,60:60:99:2362,181,0:0,0,30,30 +chrX 4704762 . G GAT 3175.97 . AC=3;AF=1.00;AN=3;AS_AltDP=73;AS_QD=32.74;DP=77;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.04;SOR=0.898;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:1141,0:0,0,10,16 1/1:0,47:47:99:2074,141,0:0,0,23,24 +chrX 4705174 . AATAG AATAGATAG,A 2572.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=40,22;AS_QD=33.33,33.75;DP=85;ExcessHet=0.0000;FS=0.000;MQ=59.94;QD=42.13;SOR=0.976;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:1016,0,1016:0,0,17,6 1/2:0,17,22:39:99:1596,905,855,696,0,718:0,0,18,21 +chrX 4705706 . T TTAGA 3970.97 . AC=3;AF=1.00;AN=3;AS_AltDP=91;AS_QD=27.25;DP=104;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.07;SOR=1.460;VarDP=91 GT:AD:DP:GQ:PL:SB 1:0,38:38:99:1688,0:0,0,26,12 1/1:0,53:53:99:2322,159,0:0,0,33,20 +chrX 4708872 . A T 2606 . AC=3;AF=1.00;AN=3;AS_AltDP=80;AS_QD=32.95;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.95;SOR=0.908;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:864,0:0,0,12,14 1/1:0,54:54:99:1772,162,0:0,0,32,22 +chrX 4709690 . T A 3250 . AC=3;AF=1.00;AN=3;AS_AltDP=104;AS_QD=31.54;DP=110;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.54;SOR=0.693;VarDP=104 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:912,0:0,0,20,9 1/1:0,75:75:99:2368,224,0:0,0,32,43 +chrX 4709724 . T C 3327 . AC=3;AF=1.00;AN=3;AS_AltDP=110;AS_QD=30.52;DP=116;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.52;SOR=0.767;VarDP=110 GT:AD:DP:GQ:PL:SB 1:0,35:35:99:1086,0:0,0,22,13 1/1:0,75:75:99:2271,224,0:0,0,31,44 +chrX 4709781 . G A 1691 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=33.75;DP=77;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.75;SOR=0.900;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:25:99:25:0,199 1/1:0,51:51:99:.:1721,153,0:0,0,23,28 +chrX 4709878 . C CAAAA,A,CA 1043 . AC=1,0,1;AF=0.333,0.00,0.333;AN=3;AS_AltDP=17,3,22;AS_QD=27.04,0.00,10.72;BaseQRankSum=-1.799;DP=62;ExcessHet=0.0000;FS=5.291;MQ=59.65;MQRankSum=-0.569;QD=20.63;ReadPosRankSum=-0.584;SOR=0.371;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,17,0,0:17:99:730,0,731,731:0,0,6,11 0/3:10,0,3,22:35:99:343,417,798,380,812,968,0,233,188,144:7,3,14,11 +chrX 4710417 . C T 2507 . AC=3;AF=1.00;AN=3;AS_AltDP=79;AS_QD=32.11;DP=79;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.11;SOR=1.068;VarDP=79 GT:AD:DP:GQ:PL:SB 1:0,18:18:99:560,0:0,0,12,6 1/1:0,61:61:99:1977,183,0:0,0,34,27 +chrX 4710656 . A C 1086 . AC=2;AF=0.667;AN=3;AS_AltDP=35;AS_QD=31.89;DP=64;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.89;SOR=0.869;VarDP=35 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:27:99:27:0,486 1/1:0,35:35:99:.:1116,104,0:0,0,16,19 +chrX 4710875 . C T 1150 . AC=2;AF=0.667;AN=3;AS_AltDP=39;AS_QD=30.26;DP=67;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.26;SOR=1.096;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:27:99:27:0,486 1/1:0,39:39:99:.:1180,117,0:0,0,23,16 +chrX 4712329 . G C 356 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=7.42;BaseQRankSum=0.932;DP=82;ExcessHet=0.0000;FS=1.155;MQ=60.00;MQRankSum=0;QD=7.42;ReadPosRankSum=-2.8;SOR=0.454;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:27:99:27:0,486 0/1:35,17:52:99:.:386,0,956:21,14,9,8 +chrX 4712720 . C T 1737 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=33.98;DP=79;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.98;SOR=0.770;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:27:99:27:0,486 1/1:0,52:52:99:.:1767,156,0:0,0,25,27 +chrX 4713049 . TAAAC T 968.97 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=19.02;BaseQRankSum=0.745;DP=85;ExcessHet=0.0000;FS=7.686;MQ=60.00;MQRankSum=0;QD=19.02;ReadPosRankSum=1.383;SOR=0.601;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:27:99:27:0,486 0/1:26,27:53:99:.:1008,0,987:17,9,12,15 +chrX 4713060 . TA T 2024.97 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=29.21;DP=85;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=36.21;SOR=0.960;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:27:99:27:0,486 1/1:0,57:57:99:.:2064,171,0:0,0,32,25 +chrX 4713124 . A T 1716 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=32.33;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.33;SOR=0.846;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:27:99:27:0,486 1/1:0,54:54:99:.:1746,162,0:0,0,29,25 +chrX 4713213 . C T 2528 . AC=3;AF=1.00;AN=3;AS_AltDP=78;AS_QD=32.79;DP=79;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.79;SOR=0.855;VarDP=78 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:776,0:0,0,14,10 1/1:0,54:54:99:1782,162,0:0,0,22,32 +chrX 4713255 . A C 2205 . AC=3;AF=1.00;AN=3;AS_AltDP=67;AS_QD=32.39;BaseQRankSum=4.518;DP=73;ExcessHet=0.0000;FS=6.477;MQ=60.00;MQRankSum=0;QD=32.39;ReadPosRankSum=0.291;SOR=0.370;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,18:18:99:596,0:0,0,11,7 1/1:2,49:51:99:1639,119,0:0,2,25,24 +chrX 4713334 . T TA 604.97 . AC=2;AF=0.667;AN=3;AS_AltDP=38;AS_QD=11.71;BaseQRankSum=-0.346;DP=80;ExcessHet=0.0000;FS=8.321;MQ=60.00;MQRankSum=0;QD=11.71;ReadPosRankSum=-0.231;SOR=0.361;VarDP=55 GT:AD:DP:GQ:PL:SB 1:1,14:15:99:283,0:1,0,4,10 0/1:16,24:40:99:361,0,231:11,5,14,10 +chrX 4713498 . GTT G 1780.97 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=33.09;DP=79;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=38.72;SOR=1.251;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:23:99:23:0,490 1/1:0,47:47:99:.:1820,141,0:0,0,18,29 +chrX 4713866 . G A 2376 . AC=3;AF=1.00;AN=3;AS_AltDP=74;AS_QD=32.51;DP=75;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.51;SOR=0.804;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:903,0:0,0,15,12 1/1:0,47:47:99:1503,140,0:0,0,24,23 +chrX 4714032 . T G 2537 . AC=3;AF=1.00;AN=3;AS_AltDP=81;AS_QD=31.69;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.69;SOR=0.718;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:814,0:0,0,11,13 1/1:0,57:57:99:1753,169,0:0,0,29,28 +chrX 4714047 . AAACTCC A 3515.97 . AC=3;AF=1.00;AN=3;AS_AltDP=79;AS_QD=29.46;DP=80;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=45.00;SOR=0.770;VarDP=79 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:1260,0:0,0,13,15 1/1:0,51:51:99:2295,154,0:0,0,25,26 +chrX 4714331 . A G 2686 . AC=3;AF=1.00;AN=3;AS_AltDP=85;AS_QD=31.95;DP=85;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.95;SOR=1.039;VarDP=85 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:999,0:0,0,21,12 1/1:0,52:52:99:1717,155,0:0,0,28,24 +chrX 4714520 . T C 2343 . AC=3;AF=1.00;AN=3;AS_AltDP=73;AS_QD=32.51;DP=76;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.51;SOR=0.776;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:976,0:0,0,12,19 1/1:0,42:42:99:1397,126,0:0,0,26,16 +chrX 4715166 . G T 2674 . AC=3;AF=1.00;AN=3;AS_AltDP=81;AS_QD=33.38;DP=84;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.38;SOR=0.718;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:1022,0:0,0,12,19 1/1:0,50:50:99:1682,150,0:0,0,28,22 +chrX 4715281 . C T 1647 . AC=3;AF=1.00;AN=3;AS_AltDP=44;AS_QD=25.12;DP=59;ExcessHet=0.0000;FS=3.310;MQ=57.35;MQRankSum=2.071;QD=37.27;SOR=0.511;VarDP=45 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,13:14:99:.:.:463,0:.:0,1,8,5 1|1:0,31:31:93:0|1:4715281_C_T:1214,93,0:4715281:0,0,16,15 +chrX 4715296 . C CCTCTCTCTCT,CCTCTCTCT 1910.97 . AC=1,2;AF=0.333,0.667;AN=3;AS_AltDP=12,37;AS_QD=34.23,28.61;BaseQRankSum=1.752;DP=68;ExcessHet=0.0000;FS=0.000;MQ=57.55;MQRankSum=1.988;QD=39.00;ReadPosRankSum=0.535;SOR=0.412;VarDP=50 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,12,0:13:99:.:.:445,0,490:.:0,1,6,6 2|2:0,0,37:37:99:0|1:4715281_C_T:1505,1505,1505,111,111,0:4715281:0,0,14,23 +chrX 4715594 . C G 2883 . AC=3;AF=1.00;AN=3;AS_AltDP=89;AS_QD=32.73;DP=91;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.73;SOR=0.965;VarDP=89 GT:AD:DP:GQ:PL:SB 1:0,37:37:99:1211,0:0,0,21,16 1/1:0,52:52:99:1702,156,0:0,0,29,23 +chrX 4715673 . G T 2986 . AC=3;AF=1.00;AN=3;AS_AltDP=96;AS_QD=31.09;BaseQRankSum=1.496;DP=99;ExcessHet=0.0000;FS=3.740;MQ=60.00;MQRankSum=0;QD=31.09;ReadPosRankSum=1.734;SOR=0.781;VarDP=97 GT:AD:DP:GQ:PL:SB 1:1,37:38:99:1131,0:1,0,16,21 1/1:0,59:59:99:1885,177,0:0,0,24,35 +chrX 4715973 . T C 2531 . AC=3;AF=1.00;AN=3;AS_AltDP=78;AS_QD=32.83;DP=78;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.83;SOR=1.040;VarDP=78 GT:AD:DP:GQ:PL:SB 1:0,18:18:99:606,0:0,0,10,8 1/1:0,60:60:99:1955,180,0:0,0,35,25 +chrX 4716079 . T C 1927 . AC=3;AF=1.00;AN=3;AS_AltDP=57;AS_QD=34.33;DP=61;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=34.33;SOR=1.047;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:832,0:0,0,12,12 1/1:0,33:33:99:1125,99,0:0,0,21,12 +chrX 4716560 . T C 2848 . AC=3;AF=1.00;AN=3;AS_AltDP=89;AS_QD=32.34;DP=97;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.34;SOR=1.204;VarDP=89 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:982,0:0,0,12,19 1/1:0,58:58:99:1896,174,0:0,0,23,35 +chrX 4716877 . CT C 997.97 . AC=2;AF=0.667;AN=3;AS_AltDP=41;AS_QD=24.69;BaseQRankSum=-0.383;DP=84;ExcessHet=0.0000;FS=3.222;MQ=60.00;MQRankSum=0;QD=24.69;ReadPosRankSum=0.619;SOR=0.453;VarDP=42 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:30:99:30:.:.:0,456 1|1:1,41:42:99:.:0|1:4716877_CT_C:1037,101,0:4716877:0,1,22,19 +chrX 4716893 . T A 1972 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=31.85;DP=80;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=42.60;SOR=0.823;VarDP=47 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:30:99:30:.:.:0,456 1|1:0,47:47:99:.:0|1:4716877_CT_C:2002,141,0:4716877:0,0,22,25 +chrX 4717279 . T A 1917 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=33.00;DP=90;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.00;SOR=0.950;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,456 1/1:0,59:59:99:.:1947,177,0:0,0,33,26 +chrX 4717870 . C T 1603 . AC=2;AF=0.667;AN=3;AS_AltDP=49;AS_QD=33.33;DP=79;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.33;SOR=0.818;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,456 1/1:0,49:49:99:.:1633,147,0:0,0,23,26 +chrX 4717967 . A G 1884 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=31.38;DP=92;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.38;SOR=1.197;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,456 1/1:0,61:61:99:.:1914,182,0:0,0,37,24 +chrX 4718501 . C A 1553 . AC=2;AF=0.667;AN=3;AS_AltDP=48;AS_QD=32.98;DP=79;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.98;SOR=1.067;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,456 1/1:0,48:48:99:.:1583,144,0:0,0,20,28 +chrX 4719008 . C G 1412 . AC=2;AF=0.667;AN=3;AS_AltDP=49;AS_QD=29.43;DP=80;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=29.43;SOR=0.733;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,456 1/1:0,49:49:99:.:1442,145,0:0,0,24,25 +chrX 4719205 . CT C 406.97 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=15.38;BaseQRankSum=0.556;DP=80;ExcessHet=0.0000;FS=4.645;MQ=58.65;MQRankSum=-0.591;QD=15.38;ReadPosRankSum=-1.184;SOR=0.148;VarDP=29 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,456 0/1:5,24:29:7:.:446,0,7:4,1,12,12 +chrX 4719321 . G A 1270 . AC=2;AF=0.667;AN=3;AS_AltDP=40;AS_QD=32.50;DP=72;ExcessHet=0.0000;FS=0.000;MQ=58.67;QD=32.50;SOR=0.693;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,456 1/1:0,40:40:99:.:1300,120,0:0,0,20,20 +chrX 4719509 . CT C 1117.97 . AC=2;AF=0.667;AN=3;AS_AltDP=40;AS_QD=28.93;DP=83;ExcessHet=0.0000;FS=0.000;MQ=59.88;QD=28.93;SOR=0.902;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,456 1/1:0,40:40:99:.:1157,120,0:0,0,18,22 +chrX 4719664 . A G 1871 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=32.78;DP=88;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.78;SOR=1.179;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,456 1/1:0,58:58:99:.:1901,174,0:0,0,35,23 +chrX 4720209 . T A 1953 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=31.98;DP=94;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.98;SOR=0.758;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,456 1/1:0,62:62:99:.:1983,185,0:0,0,30,32 +chrX 4720731 . A G 558 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=12.51;BaseQRankSum=-2.314;DP=80;ExcessHet=0.0000;FS=2.509;MQ=60.00;MQRankSum=0;QD=12.51;ReadPosRankSum=2.183;SOR=0.368;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,456 0/1:23,24:47:99:.:588,0,639:14,9,12,12 +chrX 4721455 . T C 1873 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=32.25;DP=89;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.25;SOR=0.871;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,456 1/1:0,59:59:99:.:1903,176,0:0,0,27,32 +chrX 4721616 . A ATG 339.97 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=8.81;BaseQRankSum=-1.882;DP=93;ExcessHet=0.0000;FS=1.194;MQ=59.73;MQRankSum=0;QD=8.81;ReadPosRankSum=-1.604;SOR=0.475;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,456 0/1:22,21:43:99:.:379,0,790:14,8,12,9 +chrX 4721620 . GTGTGTGTGTGTA G 667.97 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=14.14;BaseQRankSum=1.844;DP=95;ExcessHet=0.0000;FS=1.114;MQ=59.74;MQRankSum=0.824;QD=14.14;ReadPosRankSum=1.02;SOR=0.889;VarDP=50 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:30:99:30:.:.:0,456 0|1:31,19:50:99:.:0|1:4721620_GTGTGTGTGTGTA_G:707,0,1240:4721620:18,13,12,7 +chrX 4721632 . A G,* 3204 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=61,19;AS_QD=30.46,0.00;DP=89;ExcessHet=0.0000;FS=0.000;MQ=59.62;QD=40.43;SOR=1.096;VarDP=80 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,30,0:30:99:.:.:976,0,976:.:0,0,17,13 1|2:0,31,19:50:99:1|0:4721620_GTGTGTGTGTGTA_G:2258,826,706,1227,0,1241:4721620:0,0,30,20 +chrX 4722095 . C CTT 537.97 . AC=2;AF=0.667;AN=3;AS_AltDP=25;AS_QD=23.08;DP=82;ExcessHet=0.0000;FS=0.000;MQ=58.58;QD=23.08;SOR=1.136;VarDP=25 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,338 1/1:0,25:25:74:.:577,74,0:0,0,15,10 +chrX 4723975 . T C 2480 . AC=3;AF=1.00;AN=3;AS_AltDP=77;AS_QD=32.60;DP=77;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.60;SOR=1.012;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:1087,0:0,0,18,15 1/1:0,44:44:99:1423,132,0:0,0,15,29 +chrX 4724379 . A AC,C 1808 . AC=3,0;AF=1.00,0.00;AN=3;AS_AltDP=62,4;AS_QD=29.17,28.31;BaseQRankSum=-0.672;DP=73;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=27.43;ReadPosRankSum=0.289;SOR=0.337;VarDP=67 GT:AD:DP:GQ:PL:SB 1:1,29,0:30:99:782,0,811:1,0,13,16 1/1:0,33,4:37:43:1056,114,0,847,43,926:0,0,24,13 +chrX 4724977 . T C 3610 . AC=3;AF=1.00;AN=3;AS_AltDP=115;AS_QD=31.65;DP=118;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.65;SOR=0.820;VarDP=115 GT:AD:DP:GQ:PL:SB 1:0,34:34:99:1056,0:0,0,19,15 1/1:0,81:81:99:2584,243,0:0,0,42,39 +chrX 4725060 . A G 3441 . AC=3;AF=1.00;AN=3;AS_AltDP=110;AS_QD=31.55;DP=113;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.55;SOR=0.693;VarDP=110 GT:AD:DP:GQ:PL:SB 1:0,38:38:99:1224,0:0,0,21,17 1/1:0,72:72:99:2247,216,0:0,0,34,38 +chrX 4725103 . A G 2957 . AC=3;AF=1.00;AN=3;AS_AltDP=98;AS_QD=30.48;DP=106;ExcessHet=0.0000;FS=0.000;MQ=59.87;QD=30.48;SOR=0.820;VarDP=98 GT:AD:DP:GQ:PL:SB 1:0,36:36:99:1104,0:0,0,21,15 1/1:0,62:62:99:1883,184,0:0,0,31,31 +chrX 4725263 . A G 2256 . AC=3;AF=1.00;AN=3;AS_AltDP=69;AS_QD=33.13;DP=69;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.13;SOR=0.980;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:951,0:0,0,16,13 1/1:0,40:40:99:1335,120,0:0,0,14,26 +chrX 4725680 . T C 2762 . AC=3;AF=1.00;AN=3;AS_AltDP=90;AS_QD=30.68;BaseQRankSum=-0.557;DP=94;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=30.68;ReadPosRankSum=-0.053;SOR=0.327;VarDP=91 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:803,0:0,0,15,11 1/1:1,64:65:99:1989,160,0:1,0,35,29 +chrX 4729239 . C T 1548 . AC=2;AF=0.667;AN=3;AS_AltDP=49;AS_QD=32.20;DP=85;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.20;SOR=1.007;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,522 1/1:0,49:49:99:.:1578,147,0:0,0,28,21 +chrX 4729408 . C G 1877 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=30.27;DP=98;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.27;SOR=0.790;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,522 1/1:0,63:63:99:.:1907,187,0:0,0,30,33 +chrX 4729921 . G T 2507 . AC=3;AF=1.00;AN=3;AS_AltDP=81;AS_QD=30.94;BaseQRankSum=-0.784;DP=85;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=30.94;ReadPosRankSum=1.398;SOR=0.254;VarDP=82 GT:AD:DP:GQ:PL:SB 1:1,30:31:99:876,0:0,1,14,16 1/1:0,51:51:99:1661,152,0:0,0,25,26 +chrX 4730137 . G C 2039 . AC=2;AF=0.667;AN=3;AS_AltDP=65;AS_QD=31.35;BaseQRankSum=-0.481;DP=95;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=31.35;ReadPosRankSum=-0.788;SOR=0.271;VarDP=66 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,506 1/1:1,65:66:99:.:2069,163,0:0,1,33,32 +chrX 4730372 . C CT 217.97 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=8.03;BaseQRankSum=0.298;DP=79;ExcessHet=0.0000;FS=1.400;MQ=60.00;MQRankSum=0;QD=8.03;ReadPosRankSum=0.471;SOR=0.790;VarDP=32 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,506 0/1:16,16:32:99:.:257,0,229:7,9,9,7 +chrX 4731012 . T G 1514 . AC=2;AF=0.667;AN=3;AS_AltDP=45;AS_QD=34.31;DP=76;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=34.31;SOR=1.038;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,506 1/1:0,45:45:99:.:1544,135,0:0,0,19,26 +chrX 4731430 . G A 710 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=33.64;DP=55;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.64;SOR=0.874;VarDP=22 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,22:22:99:.:740,0:0,0,10,12 0/0:.:33:39:32:0,39,897 +chrX 4731722 . A G 1063 . AC=2;AF=0.667;AN=3;AS_AltDP=36;AS_QD=30.36;DP=64;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.36;SOR=1.209;VarDP=36 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:99:28:0,532 1/1:0,36:36:99:.:1093,106,0:0,0,22,14 +chrX 4731809 . T TAC 548.97 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=16.80;BaseQRankSum=-0.777;DP=74;ExcessHet=0.0000;FS=3.216;MQ=59.44;MQRankSum=0;QD=16.80;ReadPosRankSum=0.775;SOR=1.426;VarDP=35 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:99:28:0,532 0/1:14,21:35:99:.:588,0,365:8,6,15,6 +chrX 4732739 . TTA T 1682.97 . AC=2;AF=0.667;AN=3;AS_AltDP=42;AS_QD=31.34;DP=72;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=41.00;SOR=0.693;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:99:28:0,532 1/1:0,42:42:99:.:1722,126,0:0,0,21,21 +chrX 4732985 . A G 1534 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=33.28;DP=78;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.28;SOR=1.251;VarDP=47 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:99:28:0,532 1/1:0,47:47:99:.:1564,141,0:0,0,18,29 +chrX 4733110 . G A 1190 . AC=2;AF=0.667;AN=3;AS_AltDP=36;AS_QD=33.89;DP=66;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.89;SOR=1.371;VarDP=36 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:99:28:0,532 1/1:0,36:36:99:.:1220,108,0:0,0,13,23 +chrX 4733583 . A G 667 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=17.87;BaseQRankSum=-0.782;DP=67;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=17.87;ReadPosRankSum=0.249;SOR=0.770;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:99:28:0,532 0/1:14,25:39:99:.:697,0,360:7,7,13,12 +chrX 4734461 . ATGTGTGTGTGTGTGTG A,ATG 2632.97 . AC=3,0;AF=1.00,0.00;AN=3;AS_AltDP=59,3;AS_QD=29.42,33.86;DP=87;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.10;SOR=0.758;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,17,0:17:99:768,0,768:0,0,7,10 1/1:0,42,3:45:41:1904,137,0,1362,41,1237:0,0,25,20 +chrX 4734569 . T A 643 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=12.46;BaseQRankSum=-0.622;DP=81;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=12.46;ReadPosRankSum=1.189;SOR=0.712;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:26:99:26:0,382 0/1:29,25:54:99:.:673,0,815:15,14,12,13 +chrX 4734835 . G A 1832 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=33.85;DP=81;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.85;SOR=0.804;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:26:99:26:0,382 1/1:0,55:55:99:.:1862,165,0:0,0,29,26 +chrX 4735144 . A G 1928 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=33.19;DP=86;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.19;SOR=1.316;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:26:99:26:0,382 1/1:0,59:59:99:.:1958,177,0:0,0,22,37 +chrX 4736237 . G A 1630 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=31.32;DP=80;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.32;SOR=0.730;VarDP=53 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:26:99:26:0,382 1/1:0,53:53:99:.:1660,158,0:0,0,26,27 +chrX 4737626 . CAA C 281.97 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=17.83;DP=69;ExcessHet=0.0000;FS=13.676;MQ=57.95;MQRankSum=-0.543;QD=17.83;SOR=1.762;VarDP=18 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:26:99:26:0,382 0/1:3,15:18:6:.:321,0,6:0,3,11,4 +chrX 4737687 . G A 1638 . AC=2;AF=0.667;AN=3;AS_AltDP=49;AS_QD=34.04;DP=77;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=34.04;SOR=1.609;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:26:99:26:0,382 1/1:0,49:49:99:.:1668,147,0:0,0,33,16 +chrX 4738976 . GA G 2803.97 . AC=3;AF=1.00;AN=3;AS_AltDP=87;AS_QD=32.68;DP=90;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.68;SOR=0.812;VarDP=87 GT:AD:DP:GQ:PL:SB 1:0,34:34:99:1112,0:0,0,12,22 1/1:0,53:53:99:1731,159,0:0,0,29,24 +chrX 4739139 . GCACA G 2558.97 . AC=3;AF=1.00;AN=3;AS_AltDP=58;AS_QD=31.31;DP=60;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.79;SOR=0.762;VarDP=58 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,13:13:99:.:.:585,0:.:0,0,6,7 1|1:0,45:45:99:0|1:4739139_GCACA_G:2013,136,0:4739139:0,0,22,23 +chrX 4739145 . A G 2568 . AC=3;AF=1.00;AN=3;AS_AltDP=58;AS_QD=25.19;DP=58;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.79;SOR=0.762;VarDP=58 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,13:13:99:.:.:585,0:.:0,0,6,7 1|1:0,45:45:99:0|1:4739139_GCACA_G:2013,135,0:4739139:0,0,22,23 +chrX 4739147 . A G 2568 . AC=3;AF=1.00;AN=3;AS_AltDP=58;AS_QD=33.00;DP=64;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.79;SOR=0.762;VarDP=58 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,13:13:99:.:.:585,0:.:0,0,6,7 1|1:0,45:45:99:0|1:4739139_GCACA_G:2013,136,0:4739139:0,0,22,23 +chrX 4739850 . T C 789 . AC=2;AF=0.667;AN=3;AS_AltDP=25;AS_QD=32.76;DP=53;ExcessHet=0.0000;FS=0.000;MQ=59.55;QD=32.76;SOR=2.584;VarDP=25 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:27:99:27:0,427 1/1:0,25:25:75:.:819,75,0:0,0,5,20 +chrX 4740457 . T C 2514 . AC=3;AF=1.00;AN=3;AS_AltDP=82;AS_QD=31.02;DP=82;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.02;SOR=0.742;VarDP=82 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:967,0:0,0,18,14 1/1:0,50:50:99:1577,149,0:0,0,24,26 +chrX 4741820 . G A 1930 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=33.22;DP=90;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.22;SOR=0.726;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,436 1/1:0,59:59:99:.:1960,177,0:0,0,29,30 +chrX 4742225 . G C 1374 . AC=3;AF=1.00;AN=3;AS_AltDP=43;AS_QD=32.65;DP=50;ExcessHet=0.0000;FS=0.000;MQ=59.33;QD=32.65;SOR=0.941;VarDP=43 GT:AD:DP:GQ:PL:SB 1:0,9:9:99:268,0:0,0,4,5 1/1:0,34:34:99:1136,102,0:0,0,15,19 +chrX 4742232 . C CT 298.97 . AC=3;AF=1.00;AN=3;AS_AltDP=21;AS_QD=15.36;BaseQRankSum=-0.319;DP=44;ExcessHet=0.0000;FS=4.393;MQ=58.85;MQRankSum=0;QD=15.36;ReadPosRankSum=-0.319;SOR=1.326;VarDP=22 GT:AD:DP:GQ:PL:SB 1:1,3:4:23:23,0:0,1,1,2 1/1:0,18:18:52:315,52,0:0,0,13,5 +chrX 4742429 . A G 2165 . AC=3;AF=1.00;AN=3;AS_AltDP=70;AS_QD=31.36;DP=74;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.36;SOR=0.750;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:723,0:0,0,15,10 1/1:0,45:45:99:1472,134,0:0,0,21,24 +chrX 4742981 . A ATG 547.97 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=13.65;BaseQRankSum=1.562;DP=81;ExcessHet=0.0000;FS=6.514;MQ=60.00;MQRankSum=0;QD=13.65;ReadPosRankSum=-0.648;SOR=0.806;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,178 0/1:19,24:43:99:.:587,0,453:7,12,14,10 +chrX 4745817 . CA C 65.97 . AC=1;AF=0.333;AN=3;AS_AltDP=10;AS_QD=4.77;BaseQRankSum=2.286;DP=79;ExcessHet=0.0000;FS=44.682;MQ=57.49;MQRankSum=0.497;QD=4.77;ReadPosRankSum=-1.014;SOR=4.796;VarDP=22 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,178 0/1:12,10:22:99:.:105,0,153:1,11,10,0 +chrX 4745894 . G A 555 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=26.32;DP=73;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=45.00;SOR=1.179;VarDP=13 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,13:13:99:.:585,0:0,0,5,8 0/0:.:60:70:60:0,70,1100 +chrX 4745901 . T TA 545.97 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=28.24;DP=74;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=45.00;SOR=1.179;VarDP=13 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,13:13:99:.:585,0:0,0,5,8 0/0:.:60:70:60:0,70,1100 +chrX 4746418 . A T 1564 . AC=2;AF=0.667;AN=3;AS_AltDP=50;AS_QD=31.88;DP=84;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.88;SOR=0.952;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,418 1/1:0,50:50:99:.:1594,150,0:0,0,28,22 +chrX 4746916 . GA G 575.97 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=30.75;DP=73;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.75;SOR=1.127;VarDP=20 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,20:20:99:.:615,0:0,0,8,12 0/0:.:52:62:52:0,62,1067 +chrX 4747368 . G A 997 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=32.09;DP=84;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.09;SOR=1.112;VarDP=32 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,32:32:99:.:1027,0:0,0,19,13 0/0:.:52:62:52:0,62,1067 +chrX 4750216 . ATGTGTG A,ATG,ATGTG 365.97 . AC=0,0,1;AF=0.00,0.00,0.333;AN=3;AS_AltDP=0,0,13;AS_QD=1.38,0.00,13.97;BaseQRankSum=1.266;DP=87;ExcessHet=0.0000;FS=1.455;MQ=59.86;MQRankSum=0;QD=13.97;ReadPosRankSum=-1.797;SOR=0.666;VarDP=29 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:33:99:33:0,401,401,401 0/3:16,0,0,13:29:99:.:405,383,1413,499,1337,1450,0,504,428,412:7,9,7,6 +chrX 4750255 . T A 868 . AC=2;AF=0.667;AN=3;AS_AltDP=22;AS_QD=35.31;BaseQRankSum=1.909;DP=81;ExcessHet=0.0000;FS=3.074;MQ=59.84;MQRankSum=0;QD=37.42;ReadPosRankSum=0.418;SOR=0.144;VarDP=24 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:33:99:33:0,401 1/1:2,22:24:40:.:898,40,0:2,0,12,10 +chrX 4750257 . T TGAGA,A 2225 . AC=1,2;AF=0.333,0.667;AN=3;AS_AltDP=15,22;AS_QD=27.72,32.76;DP=68;ExcessHet=0.0000;FS=0.000;MQ=59.82;QD=60.95;SOR=0.746;VarDP=37 GT:AD:DP:GQ:PL:SB 1:0,14,0:14:99:598,0,598:0,0,5,9 2/2:0,1,22:23:67:1657,983,1293,90,67,0:0,0,13,10 +chrX 4750303 . C T 1347 . AC=2;AF=0.667;AN=3;AS_AltDP=45;AS_QD=30.60;DP=62;ExcessHet=0.0000;FS=0.000;MQ=59.84;QD=30.60;SOR=1.280;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:16:99:16:0,432 1/1:0,45:45:99:.:1377,133,0:0,0,17,28 +chrX 4750339 . A ATT 792.97 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=25.03;DP=81;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=36.17;SOR=0.963;VarDP=23 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,23:23:99:.:832,0:0,0,10,13 0/0:.:57:82:57:0,82,1319 +chrX 4750408 . C G 868 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=33.26;DP=85;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.26;SOR=0.765;VarDP=27 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,27:27:99:.:898,0:0,0,13,14 0/0:.:57:82:57:0,82,1319 +chrX 4751548 . C G 2858 . AC=3;AF=1.00;AN=3;AS_AltDP=89;AS_QD=32.45;DP=91;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.45;SOR=0.911;VarDP=89 GT:AD:DP:GQ:PL:SB 1:0,20:20:99:650,0:0,0,10,10 1/1:0,69:69:99:2238,207,0:0,0,39,30 +chrX 4751952 . G A 2284 . AC=3;AF=1.00;AN=3;AS_AltDP=71;AS_QD=32.59;DP=74;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.59;SOR=1.117;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:914,0:0,0,15,14 1/1:0,42:42:99:1400,126,0:0,0,14,28 +chrX 4752399 . C CAT,T 2814 . AC=3,0;AF=1.00,0.00;AN=3;AS_AltDP=63,5;AS_QD=25.39,33.07;DP=75;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=41.82;SOR=0.752;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:988,0,988:0,0,6,17 1/1:0,40,5:45:45:1856,135,0,1218,45,1129:0,0,27,18 +chrX 4752503 . GA G 1565.97 . AC=3;AF=1.00;AN=3;AS_AltDP=52;AS_QD=30.87;DP=58;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.87;SOR=0.770;VarDP=52 GT:AD:DP:GQ:PL:SB 1:0,17:17:99:525,0:0,0,9,8 1/1:0,35:35:99:1080,105,0:0,0,16,19 +chrX 4752671 . T C 2713 . AC=3;AF=1.00;AN=3;AS_AltDP=83;AS_QD=33.05;DP=85;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.05;SOR=0.717;VarDP=83 GT:AD:DP:GQ:PL:SB 1:0,35:35:99:1116,0:0,0,19,16 1/1:0,48:48:99:1627,144,0:0,0,23,25 +chrX 4753268 . T C 839 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=34.76;DP=77;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=34.76;SOR=0.770;VarDP=25 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,25:25:99:.:869,0:0,0,12,13 0/0:.:51:57:51:0,57,1007 +chrX 4754205 . TATAG T 2209.97 . AC=3;AF=1.00;AN=3;AS_AltDP=51;AS_QD=32.45;DP=55;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.10;SOR=1.314;VarDP=51 GT:AD:DP:GQ:PL:SB 1:0,17:17:99:755,0:0,0,12,5 1/1:0,34:34:99:1494,102,0:0,0,20,14 +chrX 4756437 . AC A 1874.97 . AC=2;AF=0.667;AN=3;AS_AltDP=49;AS_QD=32.47;DP=79;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=39.06;SOR=0.733;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,426 1/1:0,49:49:99:.:1914,147,0:0,0,24,25 +chrX 4756859 . CTTT C 741.97 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=23.67;BaseQRankSum=0.824;DP=65;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=23.67;ReadPosRankSum=-0.295;SOR=0.765;VarDP=33 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,426 0/1:13,20:33:99:.:781,0,486:4,9,6,14 +chrX 4756927 . C CCT 1620.97 . AC=3;AF=1.00;AN=3;AS_AltDP=40;AS_QD=32.95;DP=43;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=41.50;SOR=2.191;VarDP=40 GT:AD:DP:GQ:PL:SB 1:0,14:14:99:605,0:0,0,3,11 1/1:0,26:26:78:1055,78,0:0,0,7,19 +chrX 4757104 . A G 1069 . AC=3;AF=1.00;AN=3;AS_AltDP=39;AS_QD=28.18;DP=46;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=28.18;SOR=1.730;VarDP=39 GT:AD:DP:GQ:PL:SB 1:0,15:15:99:446,0:0,0,4,11 1/1:0,24:24:69:653,69,0:0,0,8,16 +chrX 4757133 . CTTTCTTTCTTT C 328.97 . AC=1;AF=0.333;AN=3;AS_AltDP=10;AS_QD=14.15;BaseQRankSum=0.849;DP=67;ExcessHet=0.0000;FS=1.653;MQ=60.00;MQRankSum=0;QD=14.15;ReadPosRankSum=0.434;SOR=1.270;VarDP=26 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,462 0/1:16,10:26:99:.:368,0,624:7,9,3,7 +chrX 4757176 . TTTTC T 520.97 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=16.97;BaseQRankSum=-0.864;DP=69;ExcessHet=0.0000;FS=3.093;MQ=60.00;MQRankSum=0;QD=16.97;ReadPosRankSum=1.622;SOR=0.293;VarDP=33 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,462 0/1:17,16:33:99:.:560,0,643:6,11,8,8 +chrX 4757440 . C T 664 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=14.46;BaseQRankSum=0.54;DP=81;ExcessHet=0.0000;FS=10.286;MQ=60.00;MQRankSum=0;QD=14.46;ReadPosRankSum=-0.372;SOR=0.889;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,462 0/1:23,25:48:99:.:694,0,615:15,8,10,15 +chrX 4757743 . C T 644 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=12.25;BaseQRankSum=1.088;DP=88;ExcessHet=0.0000;FS=7.389;MQ=60.00;MQRankSum=0;QD=12.25;ReadPosRankSum=-0.465;SOR=0.361;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,462 0/1:30,25:55:99:.:674,0,799:10,20,13,12 +chrX 4757981 . T C 902 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=32.14;DP=94;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.14;SOR=0.906;VarDP=29 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,29:29:99:.:932,0:0,0,16,13 0/0:.:64:99:64:0,120,1800 +chrX 4758474 . A G 3016 . AC=3;AF=1.00;AN=3;AS_AltDP=94;AS_QD=32.06;BaseQRankSum=-0.325;DP=99;ExcessHet=0.0000;FS=4.095;MQ=60.00;MQRankSum=0;QD=32.06;ReadPosRankSum=0.525;SOR=1.027;VarDP=95 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:902,0:0,0,10,19 1/1:1,65:66:99:2144,164,0:1,0,26,39 +chrX 4758914 . A C 690 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=31.30;BaseQRankSum=2.834;DP=77;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=31.30;ReadPosRankSum=-0.83;SOR=0.399;VarDP=23 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,22:23:99:.:720,0:0,1,9,13 0/0:.:52:83:52:0,83,1342 +chrX 4759004 . A T 934 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=32.13;DP=85;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.13;SOR=0.976;VarDP=30 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,30:30:99:.:964,0:0,0,13,17 0/0:.:52:83:52:0,83,1342 +chrX 4759611 . G A 545 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=12.78;BaseQRankSum=0.376;DP=75;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=12.78;ReadPosRankSum=-1.446;SOR=0.665;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,590 0/1:24,21:45:99:.:575,0,653:9,15,8,13 +chrX 4759957 . C CTT,CT 927.97 . AC=1,2;AF=0.333,0.667;AN=3;AS_AltDP=18,22;AS_QD=29.72,19.64;DP=56;ExcessHet=0.0000;FS=0.000;MQ=59.75;QD=24.18;SOR=1.151;VarDP=40 GT:AD:DP:GQ:PL:SB 1:0,18,0:18:99:535,0,535:0,0,7,11 2/2:0,0,22:22:65:432,432,432,65,65,0:0,0,9,13 +chrX 4760415 . A ATG 346.97 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=16.78;BaseQRankSum=0.502;DP=66;ExcessHet=0.0000;FS=3.834;MQ=60.00;MQRankSum=0;QD=16.78;ReadPosRankSum=0.802;SOR=1.015;VarDP=23 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:27:99:27:.:.:0,467 0|1:10,13:23:99:.:0|1:4760415_A_ATG:386,0,293:4760415:6,4,5,8 +chrX 4760436 . A T 313 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=11.06;BaseQRankSum=0.831;DP=71;ExcessHet=0.0000;FS=1.583;MQ=60.00;MQRankSum=0;QD=11.06;ReadPosRankSum=1.416;SOR=0.967;VarDP=31 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:27:99:27:.:.:0,467 0|1:18,13:31:99:.:1|0:4760415_A_ATG:343,0,547:4760415:8,10,6,4 +chrX 4761176 . C T 583 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=15.72;BaseQRankSum=1.585;DP=71;ExcessHet=0.0000;FS=1.261;MQ=60.00;MQRankSum=0;QD=15.72;ReadPosRankSum=-1.945;SOR=0.425;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:27:99:27:0,467 0/1:18,21:39:99:.:613,0,488:11,7,11,10 +chrX 4761856 . G GGAGA 1983.97 . AC=2;AF=0.667;AN=3;AS_AltDP=48;AS_QD=30.19;BaseQRankSum=2.081;DP=76;ExcessHet=0.0000;FS=1.055;MQ=60.00;MQRankSum=0;QD=30.19;ReadPosRankSum=0.191;SOR=0.478;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:1462,0:0,0,15,18 0/1:19,15:34:99:561,0,732:7,12,6,9 +chrX 4765511 . A AG 505.97 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=12.67;BaseQRankSum=0.386;DP=77;ExcessHet=0.0000;FS=6.673;MQ=60.00;MQRankSum=0;QD=12.67;ReadPosRankSum=-1.503;SOR=1.253;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,315 0/1:26,17:43:99:.:545,0,919:11,15,11,6 +chrX 4766881 . AT A 655.97 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=15.44;BaseQRankSum=-0.168;DP=78;ExcessHet=0.0000;FS=0.000;MQ=59.92;MQRankSum=-0.696;QD=15.44;ReadPosRankSum=0.071;SOR=0.665;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,199 0/1:16,29:45:99:.:695,0,322:9,7,16,13 +chrX 4767013 . CTTT C,CTTTT 346.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=6,12;AS_QD=28.00,15.17;DP=68;ExcessHet=0.0000;FS=0.000;MQ=56.99;QD=21.44;SOR=1.863;VarDP=18 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,199,199 1/2:0,6,12:18:99:.:386,218,514,215,0,204:0,0,5,13 +chrX 4767811 . CT C 354.97 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=13.13;BaseQRankSum=-0.851;DP=70;ExcessHet=0.0000;FS=5.930;MQ=60.00;MQRankSum=0;QD=13.13;ReadPosRankSum=0.506;SOR=1.273;VarDP=30 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,199 0/1:10,20:30:99:.:394,0,149:6,4,7,13 +chrX 4769994 . C A,CA 385 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=5,20;AS_QD=4.30,11.86;BaseQRankSum=-0.668;DP=77;ExcessHet=0.0000;FS=1.258;MQ=60.00;MQRankSum=0;QD=10.38;ReadPosRankSum=0.224;SOR=0.983;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,199,199 0/2:15,5,20:40:99:.:415,329,924,0,247,288:7,8,10,15 +chrX 4770141 . GA G 490.97 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=12.05;BaseQRankSum=0.213;DP=83;ExcessHet=0.0000;FS=2.652;MQ=60.00;MQRankSum=0;QD=12.05;ReadPosRankSum=-0.578;SOR=1.270;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,199 0/1:20,24:44:99:.:530,0,426:10,10,15,9 +chrX 4771242 . CACACACACACAT C 1236.97 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=20.25;BaseQRankSum=-1.429;DP=94;ExcessHet=0.0000;FS=5.136;MQ=60.00;MQRankSum=0;QD=20.25;ReadPosRankSum=-0.22;SOR=0.268;VarDP=63 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:29:99:29:.:.:0,199 0|1:30,33:63:99:.:0|1:4771242_CACACACACACAT_C:1276,0,1160:4771242:20,10,17,16 +chrX 4771255 . A G 1245 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=20.24;BaseQRankSum=-0.427;DP=92;ExcessHet=0.0000;FS=5.136;MQ=60.00;MQRankSum=0;QD=20.24;ReadPosRankSum=-0.398;SOR=0.268;VarDP=63 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:29:99:29:.:.:0,199 0|1:30,33:63:99:.:0|1:4771242_CACACACACACAT_C:1275,0,1160:4771242:20,10,17,16 +chrX 4771769 . C T 1034 . AC=1;AF=0.333;AN=3;AS_AltDP=40;AS_QD=16.63;BaseQRankSum=-0.354;DP=97;ExcessHet=0.0000;FS=3.469;MQ=60.00;MQRankSum=0;QD=16.63;ReadPosRankSum=0.305;SOR=1.151;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,199 0/1:24,40:64:99:.:1064,0,568:12,12,24,16 +chrX 4772610 . T G 1412 . AC=2;AF=0.667;AN=3;AS_AltDP=50;AS_QD=17.17;BaseQRankSum=0.233;DP=85;ExcessHet=0.0000;FS=2.966;MQ=60.00;MQRankSum=0;QD=17.17;ReadPosRankSum=0.05;SOR=0.694;VarDP=84 GT:AD:DP:GQ:PL:SB 1:0,22:22:99:725,0:0,0,11,11 0/1:34,28:62:99:717,0,935:15,19,16,12 +chrX 4773701 . G A 1684 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=21.16;BaseQRankSum=-0.85;DP=82;ExcessHet=0.0000;FS=12.688;MQ=60.00;MQRankSum=0;QD=21.16;ReadPosRankSum=0.058;SOR=0.756;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:849,0:0,0,14,11 0/1:24,32:56:99:865,0,590:8,16,19,13 +chrX 4775155 . GAA GAAAAAAA,G 501.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=4,12;AS_QD=20.38,23.63;BaseQRankSum=-0.74;DP=38;ExcessHet=0.0000;FS=5.727;MQ=60.00;MQRankSum=0;QD=27.05;ReadPosRankSum=-1.822;SOR=0.094;VarDP=20 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,4,0:4:99:.:.:163,0,163:.:0,0,3,1 0|2:4,0,12:16:75:0|1:4775155_GAA_G:378,390,502,0,112,75:4775155:4,0,7,5 +chrX 4776293 . A AT 2191.97 . AC=2;AF=0.667;AN=3;AS_AltDP=68;AS_QD=24.25;BaseQRankSum=1.674;DP=98;ExcessHet=0.0000;FS=0.898;MQ=60.00;MQRankSum=0;QD=24.25;ReadPosRankSum=-0.355;SOR=0.880;VarDP=92 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:1183,0:0,0,14,19 0/1:24,35:59:99:1048,0,679:12,12,17,18 +chrX 4776510 . T C 2064 . AC=2;AF=0.667;AN=3;AS_AltDP=70;AS_QD=23.80;BaseQRankSum=-0.76;DP=92;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=23.80;ReadPosRankSum=2.044;SOR=0.608;VarDP=88 GT:AD:DP:GQ:PL:SB 1:0,39:39:99:1239,0:0,0,20,19 0/1:18,31:49:99:855,0,458:8,10,13,18 +chrX 4777077 . G T 556 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=9.61;BaseQRankSum=0.557;DP=95;ExcessHet=0.0000;FS=0.000;MQ=59.53;MQRankSum=1.133;QD=9.61;ReadPosRankSum=0.134;SOR=0.634;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,755 0/1:38,23:61:99:.:586,0,1067:16,22,10,13 +chrX 4777158 . T G 763 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=31.72;DP=82;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.72;SOR=0.941;VarDP=25 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,25:25:99:.:793,0:0,0,11,14 0/0:.:56:99:56:0,104,1574 +chrX 4777179 . G GAATA 2203.97 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=29.51;BaseQRankSum=0.805;DP=82;ExcessHet=0.0000;FS=4.976;MQ=60.00;MQRankSum=0;QD=29.51;ReadPosRankSum=1.288;SOR=0.634;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:1305,0:0,0,15,14 0/1:23,24:47:99:938,0,894:14,9,9,15 +chrX 4777876 . TTC T 1123.97 . AC=2;AF=0.667;AN=3;AS_AltDP=37;AS_QD=20.77;BaseQRankSum=-1.433;DP=72;ExcessHet=0.0000;FS=4.046;MQ=60.00;MQRankSum=0;QD=20.77;ReadPosRankSum=-0.364;SOR=1.220;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,19:19:99:674,0:0,0,8,11 0/1:19,18:37:99:489,0,552:10,9,6,12 +chrX 4778036 . C CTTTTTTTT 1390.97 . AC=2;AF=0.667;AN=3;AS_AltDP=36;AS_QD=25.54;BaseQRankSum=1.102;DP=64;ExcessHet=0.0000;FS=0.000;MQ=59.27;MQRankSum=0;QD=25.54;ReadPosRankSum=-0.778;SOR=0.723;VarDP=56 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,19:19:99:.:.:819,0:.:0,0,10,9 0|1:20,17:37:99:0|1:4778036_C_CTTTTTTTT:611,0,720:4778036:11,9,10,7 +chrX 4778147 . A C 1211 . AC=2;AF=0.667;AN=3;AS_AltDP=44;AS_QD=17.73;BaseQRankSum=-1.281;DP=74;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=17.73;ReadPosRankSum=-2.572;SOR=0.784;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:774,0:0,0,11,13 0/1:26,20:46:99:467,0,726:13,13,12,8 +chrX 4778604 . GT G 1057.97 . AC=2;AF=0.667;AN=3;AS_AltDP=45;AS_QD=13.71;BaseQRankSum=0.971;DP=90;ExcessHet=0.0000;FS=3.004;MQ=60.00;MQRankSum=0;QD=13.71;ReadPosRankSum=-0.451;SOR=1.056;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:646,0:0,0,10,13 0/1:35,22:57:99:451,0,798:16,19,7,15 +chrX 4778764 . T C 1611 . AC=2;AF=0.667;AN=3;AS_AltDP=42;AS_QD=27.35;BaseQRankSum=-2.16;DP=61;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=27.35;ReadPosRankSum=0.099;SOR=0.693;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,21:21:99:.:.:916,0:.:0,0,10,11 0|1:18,21:39:99:0|1:4778764_T_C:725,0,665:4778764:9,9,11,10 +chrX 4778766 . TTC T 247.97 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=19.13;BaseQRankSum=-0.432;DP=59;ExcessHet=0.0000;FS=3.310;MQ=60.00;MQRankSum=0;QD=19.13;ReadPosRankSum=-0.17;SOR=0.349;VarDP=15 GT:AD:DP:GQ:MIN_DP:PL:SB 1:2,13:15:99:.:287,0:2,0,6,7 0/0:.:38:69:38:0,69,1035 +chrX 4778767 . TC *,T 688.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=0,21;AS_QD=0.00,19.16;BaseQRankSum=-1.819;DP=60;ExcessHet=0.0000;FS=1.108;MQ=60.00;MQRankSum=0;QD=19.16;ReadPosRankSum=0.03;SOR=0.446;VarDP=38 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:2,13,0:15:99:.:.:287,0,357:.:2,0,6,7 0|2:17,0,21:38:99:0|1:4778764_T_C:728,779,1481,0,702,639:4778764:9,8,11,10 +chrX 4779094 . C T 1138 . AC=2;AF=0.667;AN=3;AS_AltDP=42;AS_QD=15.17;BaseQRankSum=-1.1;DP=79;ExcessHet=0.0000;FS=1.876;MQ=60.00;MQRankSum=0;QD=15.17;ReadPosRankSum=-2.148;SOR=0.653;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,20:20:99:644,0:0,0,11,9 0/1:35,22:57:99:524,0,956:19,16,9,13 +chrX 4779280 . T A 1139 . AC=2;AF=0.667;AN=3;AS_AltDP=39;AS_QD=16.94;BaseQRankSum=0.882;DP=73;ExcessHet=0.0000;FS=3.288;MQ=60.00;MQRankSum=0;QD=16.94;ReadPosRankSum=1.492;SOR=0.666;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,17:17:99:591,0:0,0,7,10 0/1:30,22:52:99:578,0,814:13,17,14,8 +chrX 4779310 . A C 1442 . AC=2;AF=0.667;AN=3;AS_AltDP=50;AS_QD=19.89;BaseQRankSum=1.444;DP=78;ExcessHet=0.0000;FS=6.696;MQ=59.99;MQRankSum=0;QD=19.89;ReadPosRankSum=-2.109;SOR=0.683;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,21:21:99:661,0:0,0,11,10 0/1:24,29:53:99:811,0,610:9,15,17,12 +chrX 4779388 . T C 1513 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=19.53;BaseQRankSum=-1.753;DP=80;ExcessHet=0.0000;FS=0.913;MQ=60.00;MQRankSum=0;QD=19.53;ReadPosRankSum=0.864;SOR=0.840;VarDP=79 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:834,0:0,0,17,9 0/1:25,28:53:99:709,0,680:14,11,15,13 +chrX 4779586 . A C 1529 . AC=2;AF=0.667;AN=3;AS_AltDP=50;AS_QD=22.93;BaseQRankSum=2.438;DP=70;ExcessHet=0.0000;FS=2.321;MQ=60.00;MQRankSum=0;QD=22.93;ReadPosRankSum=1.327;SOR=0.708;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:893,0:0,0,15,12 0/1:18,23:41:99:666,0,442:8,10,12,11 +chrX 4779616 . A G 1399 . AC=2;AF=0.667;AN=3;AS_AltDP=49;AS_QD=22.33;BaseQRankSum=-0.179;DP=65;ExcessHet=0.0000;FS=1.129;MQ=60.00;MQRankSum=0;QD=22.33;ReadPosRankSum=0.681;SOR=0.721;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:865,0:0,0,15,12 0/1:15,22:37:99:564,0,370:7,8,11,11 +chrX 4779790 . A T 1623 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=17.97;BaseQRankSum=0.242;DP=95;ExcessHet=0.0000;FS=2.879;MQ=59.86;MQRankSum=0;QD=17.97;ReadPosRankSum=0.233;SOR=0.741;VarDP=92 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:912,0:0,0,10,20 0/1:33,29:62:99:741,0,860:18,15,17,12 +chrX 4779822 . T C 1472 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=19.26;BaseQRankSum=-0.87;DP=83;ExcessHet=0.0000;FS=3.148;MQ=60.00;MQRankSum=0;QD=19.26;ReadPosRankSum=-0.126;SOR=0.945;VarDP=78 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:799,0:0,0,6,17 0/1:27,28:55:99:703,0,714:14,13,16,12 +chrX 4779968 . C G 1532 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=19.53;BaseQRankSum=2.002;DP=82;ExcessHet=0.0000;FS=0.895;MQ=60.00;MQRankSum=0;QD=19.53;ReadPosRankSum=-1.099;SOR=0.560;VarDP=80 GT:AD:DP:GQ:PL:SB 1:1,27:28:99:864,0:1,0,15,12 0/1:25,27:52:99:698,0,667:13,12,12,15 +chrX 4780027 . T C 1381 . AC=2;AF=0.667;AN=3;AS_AltDP=49;AS_QD=19.07;BaseQRankSum=-0.313;DP=76;ExcessHet=0.0000;FS=0.933;MQ=60.00;MQRankSum=0;QD=19.07;ReadPosRankSum=0.964;SOR=0.755;VarDP=74 GT:AD:DP:GQ:PL:SB 1:1,26:27:99:828,0:1,0,14,12 0/1:24,23:47:99:583,0,683:11,13,12,11 +chrX 4780056 . G T 1260 . AC=2;AF=0.667;AN=3;AS_AltDP=43;AS_QD=18.70;BaseQRankSum=-0.203;DP=73;ExcessHet=0.0000;FS=0.925;MQ=60.00;MQRankSum=0;QD=18.70;ReadPosRankSum=0.642;SOR=0.836;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,22:22:99:745,0:0,0,13,9 0/1:26,21:47:99:545,0,702:13,13,10,11 +chrX 4780109 . A G 1154 . AC=2;AF=0.667;AN=3;AS_AltDP=41;AS_QD=19.10;BaseQRankSum=-2.162;DP=64;ExcessHet=0.0000;FS=2.232;MQ=60.00;MQRankSum=0;QD=19.10;ReadPosRankSum=-0.474;SOR=0.524;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,22:22:99:684,0:0,0,11,11 0/1:21,19:40:99:500,0,610:12,9,9,10 +chrX 4780325 . C T 1313 . AC=2;AF=0.667;AN=3;AS_AltDP=45;AS_QD=19.75;BaseQRankSum=-2.322;DP=72;ExcessHet=0.0000;FS=3.530;MQ=60.00;MQRankSum=0;QD=19.75;ReadPosRankSum=-1.407;SOR=0.766;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,22:22:99:732,0:0,0,12,10 0/1:23,23:46:99:611,0,660:13,10,8,15 +chrX 4780349 . GTATA G 1684.97 . AC=2;AF=0.667;AN=3;AS_AltDP=43;AS_QD=24.28;BaseQRankSum=0.066;DP=74;ExcessHet=0.0000;FS=1.998;MQ=60.00;MQRankSum=0;QD=24.28;ReadPosRankSum=-0.546;SOR=0.728;VarDP=71 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,21:21:99:.:.:895,0:.:0,0,11,10 0|1:28,22:50:99:0|1:4780349_GTATA_G:829,0,1109:4780349:15,13,9,13 +chrX 4780355 . GTA G 1684.97 . AC=2;AF=0.667;AN=3;AS_AltDP=43;AS_QD=24.28;BaseQRankSum=-0.676;DP=71;ExcessHet=0.0000;FS=1.998;MQ=60.00;MQRankSum=0;QD=24.28;ReadPosRankSum=-0.743;SOR=0.728;VarDP=71 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,21:21:99:.:.:895,0:.:0,0,11,10 0|1:28,22:50:99:0|1:4780349_GTATA_G:829,0,1109:4780349:15,13,9,13 +chrX 4780427 . C T 1965 . AC=2;AF=0.667;AN=3;AS_AltDP=48;AS_QD=28.10;BaseQRankSum=2.506;DP=74;ExcessHet=0.0000;FS=5.068;MQ=60.00;MQRankSum=0;QD=28.10;ReadPosRankSum=-0.235;SOR=0.926;VarDP=71 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,27:27:99:.:.:1183,0:.:0,0,8,19 0|1:23,21:44:99:0|1:4780427_C_T:812,0,880:4780427:13,10,12,9 +chrX 4780434 . A G 2003 . AC=2;AF=0.667;AN=3;AS_AltDP=49;AS_QD=28.63;BaseQRankSum=-0.101;DP=73;ExcessHet=0.0000;FS=2.118;MQ=60.00;MQRankSum=0;QD=28.63;ReadPosRankSum=-0.134;SOR=1.007;VarDP=71 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,28:28:99:.:.:1218,0:.:0,0,9,19 0|1:22,21:43:99:0|1:4780427_C_T:815,0,840:4780427:11,11,12,9 +chrX 4780537 . T G 1196 . AC=2;AF=0.667;AN=3;AS_AltDP=44;AS_QD=16.79;BaseQRankSum=0.073;DP=76;ExcessHet=0.0000;FS=6.352;MQ=59.84;MQRankSum=0;QD=16.79;ReadPosRankSum=0.814;SOR=0.597;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:719,0:0,0,13,11 0/1:29,20:49:99:507,0,799:11,18,11,9 +chrX 4780622 . T C 1428 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=18.00;BaseQRankSum=-2.214;DP=84;ExcessHet=0.0000;FS=7.749;MQ=60.00;MQRankSum=0;QD=18.00;ReadPosRankSum=-0.034;SOR=1.147;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,35:35:99:1096,0:0,0,21,14 0/1:29,17:46:99:362,0,809:13,16,11,6 +chrX 4781806 . T G 2036 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=26.49;BaseQRankSum=1.394;DP=81;ExcessHet=0.0000;FS=8.008;MQ=60.00;MQRankSum=0;QD=26.49;ReadPosRankSum=-0.373;SOR=0.606;VarDP=78 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,34:34:99:.:.:1473,0:.:0,0,15,19 0|1:27,17:44:99:0|1:4781806_T_G:593,0,1032:4781806:17,10,8,9 +chrX 4781823 . T C 2141 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=26.80;BaseQRankSum=0.422;DP=81;ExcessHet=0.0000;FS=6.233;MQ=60.00;MQRankSum=0;QD=26.80;ReadPosRankSum=-0.991;SOR=0.533;VarDP=81 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,36:36:99:.:.:1547,0:.:0,0,16,20 0|1:27,18:45:99:0|1:4781806_T_G:624,0,1029:4781806:17,10,9,9 +chrX 4782576 . G A 1807 . AC=2;AF=0.667;AN=3;AS_AltDP=44;AS_QD=25.87;BaseQRankSum=2.501;DP=76;ExcessHet=0.0000;FS=0.000;MQ=59.68;MQRankSum=0;QD=25.87;ReadPosRankSum=-1.252;SOR=0.696;VarDP=71 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,24:24:99:.:.:1079,0:.:0,0,7,17 0|1:27,20:47:99:0|1:4782576_G_A:758,0,1048:4782576:11,16,11,9 +chrX 4782577 . A G 1807 . AC=2;AF=0.667;AN=3;AS_AltDP=44;AS_QD=25.87;BaseQRankSum=1.777;DP=75;ExcessHet=0.0000;FS=0.000;MQ=59.57;MQRankSum=0;QD=25.87;ReadPosRankSum=-0.925;SOR=0.696;VarDP=71 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,24:24:99:.:.:1079,0:.:0,0,7,17 0|1:27,20:47:99:0|1:4782576_G_A:758,0,1048:4782576:11,16,11,9 +chrX 4782626 . GTAGA G 604.97 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=15.71;BaseQRankSum=1.674;DP=69;ExcessHet=0.0000;FS=2.755;MQ=59.34;MQRankSum=1.24;QD=15.71;ReadPosRankSum=0.457;SOR=0.965;VarDP=41 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:20:99:20:.:.:0,452 0|1:24,17:41:99:.:1|0:4782576_G_A:644,0,849:4782576:13,11,7,10 +chrX 4782930 . A G 1157 . AC=2;AF=0.667;AN=3;AS_AltDP=40;AS_QD=20.12;BaseQRankSum=-0.745;DP=61;ExcessHet=0.0000;FS=1.059;MQ=60.00;MQRankSum=0;QD=20.12;ReadPosRankSum=1.583;SOR=0.519;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,18:18:99:606,0:0,0,7,11 0/1:19,22:41:99:581,0,509:8,11,12,10 +chrX 4783101 . A AGATG 1486.97 . AC=2;AF=0.667;AN=3;AS_AltDP=37;AS_QD=27.25;BaseQRankSum=1.504;DP=61;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=27.25;ReadPosRankSum=0.759;SOR=0.660;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,17:17:99:744,0:0,0,10,7 0/1:19,20:39:99:782,0,738:10,9,8,12 +chrX 4783132 . T C 1021 . AC=2;AF=0.667;AN=3;AS_AltDP=36;AS_QD=18.77;BaseQRankSum=-0.448;DP=60;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=18.77;ReadPosRankSum=-1.53;SOR=0.619;VarDP=56 GT:AD:DP:GQ:PL:SB 1:0,16:16:99:506,0:0,0,8,8 0/1:20,20:40:99:545,0,555:9,11,9,11 +chrX 4783195 . G A 871 . AC=2;AF=0.667;AN=3;AS_AltDP=32;AS_QD=14.77;BaseQRankSum=-0.046;DP=64;ExcessHet=0.0000;FS=2.133;MQ=60.00;MQRankSum=0;QD=14.77;ReadPosRankSum=-0.46;SOR=0.910;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,14:14:99:457,0:0,0,8,6 0/1:29,18:47:99:444,0,789:14,15,10,8 +chrX 4783210 . AAGAT A 1005.97 . AC=2;AF=0.667;AN=3;AS_AltDP=26;AS_QD=21.33;BaseQRankSum=-1.442;DP=56;ExcessHet=0.0000;FS=4.022;MQ=60.00;MQRankSum=0;QD=21.33;ReadPosRankSum=-0.105;SOR=0.873;VarDP=49 GT:AD:DP:GQ:PL:SB 1:0,11:11:99:484,0:0,0,7,4 0/1:23,15:38:99:561,0,920:10,13,8,7 +chrX 4783703 . A G 1641 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=23.87;BaseQRankSum=0.986;DP=72;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=23.87;ReadPosRankSum=-0.817;SOR=0.753;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,35:35:99:1121,0:0,0,18,17 0/1:15,20:35:99:550,0,351:8,7,12,8 +chrX 4784030 . G A 978 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=33.60;DP=75;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.60;SOR=0.826;VarDP=30 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,30:30:99:.:1008,0:0,0,16,14 0/0:.:45:84:45:0,84,1132 +chrX 4784228 . GT G 1166.97 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=19.14;BaseQRankSum=-1.095;DP=71;ExcessHet=0.0000;FS=13.838;MQ=60.00;MQRankSum=0;QD=19.14;ReadPosRankSum=0.592;SOR=0.655;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:649,0:0,0,11,12 0/1:16,24:40:99:557,0,327:4,12,16,8 +chrX 4784546 . A G 1292 . AC=2;AF=0.667;AN=3;AS_AltDP=48;AS_QD=15.93;BaseQRankSum=-1.201;DP=84;ExcessHet=0.0000;FS=7.205;MQ=60.00;MQRankSum=0;QD=15.93;ReadPosRankSum=-0.184;SOR=0.434;VarDP=83 GT:AD:DP:GQ:PL:SB 1:0,18:18:99:575,0:0,0,8,10 0/1:35,30:65:99:747,0,951:22,13,15,15 +chrX 4785263 . ACC A 1913.97 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=29.15;BaseQRankSum=2.942;DP=81;ExcessHet=0.0000;FS=57.862;MQ=60.00;MQRankSum=0;QD=29.15;ReadPosRankSum=1.455;SOR=1.387;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:1115,0:0,0,17,11 0/1:15,24:39:99:838,0,450:0,15,18,6 +chrX 4785309 . T C 1476 . AC=2;AF=0.667;AN=3;AS_AltDP=49;AS_QD=22.82;BaseQRankSum=-1.839;DP=68;ExcessHet=0.0000;FS=38.955;MQ=60.00;MQRankSum=0;QD=22.82;ReadPosRankSum=-1.097;SOR=1.395;VarDP=66 GT:AD:DP:GQ:PL:SB 1:0,22:22:99:765,0:0,0,14,8 0/1:17,27:44:99:741,0,458:2,15,19,8 +chrX 4785871 . C T 1881 . AC=2;AF=0.667;AN=3;AS_AltDP=65;AS_QD=18.74;BaseQRankSum=1.427;DP=103;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=18.74;ReadPosRankSum=0.205;SOR=0.706;VarDP=102 GT:AD:DP:GQ:PL:SB 1:0,37:37:99:1163,0:0,0,22,15 0/1:37,28:65:99:748,0,980:21,16,15,13 +chrX 4785977 . G A 1857 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=20.97;BaseQRankSum=3.024;DP=91;ExcessHet=0.0000;FS=0.844;MQ=59.92;MQRankSum=0;QD=20.97;ReadPosRankSum=-1.318;SOR=0.650;VarDP=90 GT:AD:DP:GQ:PL:SB 1:0,40:40:99:1340,0:0,0,20,20 0/1:30,20:50:99:547,0,708:16,14,9,11 +chrX 4786271 . T C 1856 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=22.19;BaseQRankSum=-0.015;DP=87;ExcessHet=0.0000;FS=2.099;MQ=60.00;MQRankSum=0;QD=22.19;ReadPosRankSum=-1.237;SOR=1.041;VarDP=85 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:1055,0:0,0,19,13 0/1:22,31:53:99:831,0,560:12,10,20,11 +chrX 4786467 . T C 1921 . AC=2;AF=0.667;AN=3;AS_AltDP=64;AS_QD=20.11;BaseQRankSum=0.334;DP=97;ExcessHet=0.0000;FS=7.169;MQ=60.00;MQRankSum=0;QD=20.11;ReadPosRankSum=0.558;SOR=0.264;VarDP=97 GT:AD:DP:GQ:PL:SB 1:0,40:40:99:1298,0:0,0,23,17 0/1:33,24:57:99:653,0,955:23,10,12,12 +chrX 4787198 . C T 1789 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=21.40;BaseQRankSum=1.623;DP=89;ExcessHet=0.0000;FS=6.062;MQ=60.00;MQRankSum=0;QD=21.40;ReadPosRankSum=-0.274;SOR=0.416;VarDP=85 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:894,0:0,0,12,14 0/1:27,32:59:99:925,0,705:10,17,18,14 +chrX 4787593 . GA G 1016.97 . AC=2;AF=0.667;AN=3;AS_AltDP=44;AS_QD=17.90;BaseQRankSum=0.152;DP=68;ExcessHet=0.0000;FS=6.663;MQ=59.48;MQRankSum=-1.072;QD=17.90;ReadPosRankSum=0.475;SOR=1.622;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,19:19:99:523,0:0,0,14,5 0/1:15,25:40:99:533,0,281:7,8,16,9 +chrX 4788001 . T C 1787 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=21.89;BaseQRankSum=-0.376;DP=84;ExcessHet=0.0000;FS=0.945;MQ=60.00;MQRankSum=0;QD=21.89;ReadPosRankSum=-0.197;SOR=0.577;VarDP=83 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:848,0:0,0,12,14 0/1:22,35:57:99:969,0,564:12,10,18,17 +chrX 4788663 . C A 680 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=12.68;BaseQRankSum=-1.323;DP=84;ExcessHet=0.0000;FS=3.749;MQ=60.00;MQRankSum=0;QD=12.68;ReadPosRankSum=0.09;SOR=1.104;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:27:99:27:0,481 0/1:28,28:56:99:.:710,0,765:13,15,17,11 +chrX 4788945 . T G 2265 . AC=3;AF=1.00;AN=3;AS_AltDP=53;AS_QD=29.51;BaseQRankSum=0;DP=54;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=42.50;ReadPosRankSum=0.307;SOR=0.395;VarDP=54 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,16:17:99:.:.:663,0:.:0,1,8,8 1|1:0,37:37:99:0|1:4788945_T_G:1632,111,0:4788945:0,0,14,23 +chrX 4788962 . T A 2230 . AC=3;AF=1.00;AN=3;AS_AltDP=52;AS_QD=30.42;BaseQRankSum=0;DP=53;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=42.64;ReadPosRankSum=-1.413;SOR=0.374;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,15:16:99:.:.:629,0:.:0,1,7,8 1|1:0,37:37:99:0|1:4788945_T_G:1631,111,0:4788945:0,0,15,22 +chrX 4789013 . A T 1848 . AC=3;AF=1.00;AN=3;AS_AltDP=61;AS_QD=30.29;BaseQRankSum=-0.28;DP=64;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=30.29;ReadPosRankSum=0.26;SOR=0.330;VarDP=62 GT:AD:DP:GQ:PL:SB 1:1,19:20:99:589,0:0,1,10,9 1/1:0,42:42:99:1289,124,0:0,0,17,25 +chrX 4789144 . A ATATATAT,AATATATATAT,T,AATATATAT,AAAATATATAT,AAATATATAT 839 . AC=2,0,0,0,1,0;AF=0.667,0.00,0.00,0.00,0.333,0.00;AN=3;AS_AltDP=5,0,0,0,2,0;AS_QD=25.97,31.95,23.70,32.77,30.86,31.74;DP=36;ExcessHet=0.0000;FS=0.000;MQ=52.80;QD=124.14;SOR=0.941;VarDP=7 GT:AD:DP:GQ:PL:SB 1:0,2,0,0,0,0,0:2:99:299,0,133,229,229,229,229:0,0,1,1 1/5:0,3,0,0,0,2,0:5:82:570,193,340,479,336,600,419,371,490,594,244,151,354,218,318,231,0,240,82,203,266,442,308,566,448,352,235,562:0,0,3,2 +chrX 4789327 . T TA 1703.97 . AC=3;AF=1.00;AN=3;AS_AltDP=58;AS_QD=30.05;DP=63;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.05;SOR=0.914;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:718,0:0,0,14,10 1/1:0,34:34:99:1025,102,0:0,0,18,16 +chrX 4789715 . A ATTAGAC 3986.97 . AC=3;AF=1.00;AN=3;AS_AltDP=91;AS_QD=30.23;BaseQRankSum=-0.314;DP=96;ExcessHet=0.0000;FS=3.106;MQ=60.00;MQRankSum=0;QD=43.76;ReadPosRankSum=1.127;SOR=0.328;VarDP=92 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:1434,0:0,0,17,15 1/1:1,59:60:99:2592,135,0:0,1,30,29 +chrX 4789794 . C CGTAA 4089.97 . AC=3;AF=1.00;AN=3;AS_AltDP=95;AS_QD=30.38;BaseQRankSum=-0.635;DP=100;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=43.01;ReadPosRankSum=0.743;SOR=0.249;VarDP=96 GT:AD:DP:GQ:PL:SB 1:1,34:35:99:1454,0:1,0,18,16 1/1:0,61:61:99:2675,183,0:0,0,31,30 +chrX 4789988 . T G 677 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=13.60;BaseQRankSum=-2.042;DP=85;ExcessHet=0.0000;FS=4.058;MQ=60.00;MQRankSum=0;QD=13.60;ReadPosRankSum=1.08;SOR=1.470;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,611 0/1:26,26:52:99:.:707,0,747:12,14,8,18 +chrX 4791082 . ATTTTT A 908.97 . AC=2;AF=0.667;AN=3;AS_AltDP=29;AS_QD=20.61;BaseQRankSum=-0.611;DP=71;ExcessHet=0.0000;FS=8.981;MQ=59.76;MQRankSum=0;QD=20.61;ReadPosRankSum=-0.51;SOR=1.046;VarDP=46 GT:AD:DP:GQ:PL:SB 1:3,13:16:99:317,0:2,1,6,7 0/1:14,16:30:99:631,0,475:9,5,5,11 +chrX 4791902 . T C 2400 . AC=3;AF=1.00;AN=3;AS_AltDP=75;AS_QD=32.40;DP=78;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.40;SOR=0.774;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:1022,0:0,0,12,18 1/1:0,45:45:99:1408,134,0:0,0,27,18 +chrX 4794299 . C A 720 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=12.71;BaseQRankSum=1.67;DP=92;ExcessHet=0.0000;FS=1.025;MQ=60.00;MQRankSum=0;QD=12.71;ReadPosRankSum=-0.516;SOR=0.963;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,457 0/1:31,28:59:99:.:750,0,796:18,13,18,10 +chrX 4796072 . G A 611 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=12.57;BaseQRankSum=-0.997;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=12.57;ReadPosRankSum=1.407;SOR=0.782;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,457 0/1:27,24:51:99:.:641,0,765:14,13,13,11 +chrX 4796248 . A C 535 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=14.13;BaseQRankSum=2.075;DP=72;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=14.13;ReadPosRankSum=-1.001;SOR=0.693;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,457 0/1:20,20:40:99:.:565,0,515:8,12,8,12 +chrX 4796326 . G A 331 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=10.31;BaseQRankSum=-2.385;DP=68;ExcessHet=0.0000;FS=5.490;MQ=60.00;MQRankSum=0;QD=10.31;ReadPosRankSum=-0.484;SOR=0.164;VarDP=35 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,457 0/1:20,15:35:99:.:361,0,590:15,5,8,7 +chrX 4797366 . A G 410 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=10.00;BaseQRankSum=0.987;DP=77;ExcessHet=0.0000;FS=2.704;MQ=60.00;MQRankSum=0;QD=10.00;ReadPosRankSum=2.086;SOR=0.936;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,457 0/1:27,17:44:99:.:440,0,701:12,15,10,7 +chrX 4798520 . G A 1424 . AC=2;AF=0.667;AN=3;AS_AltDP=46;AS_QD=31.61;DP=80;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.61;SOR=0.780;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,457 1/1:0,46:46:99:.:1454,138,0:0,0,22,24 +chrX 4798766 . G C 529 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=13.31;BaseQRankSum=2.216;DP=74;ExcessHet=0.0000;FS=4.360;MQ=60.00;MQRankSum=0;QD=13.31;ReadPosRankSum=-0.756;SOR=1.402;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,457 0/1:22,20:42:99:.:559,0,552:11,11,13,7 +chrX 4799056 . G A 194 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=5.46;BaseQRankSum=0.225;DP=74;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=5.46;ReadPosRankSum=0.397;SOR=0.859;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,457 0/1:30,11:41:99:.:224,0,848:15,15,5,6 +chrX 4800596 . A G 882 . AC=1;AF=0.333;AN=3;AS_AltDP=34;AS_QD=14.03;BaseQRankSum=-0.556;DP=97;ExcessHet=0.0000;FS=13.203;MQ=60.00;MQRankSum=0;QD=14.03;ReadPosRankSum=0.88;SOR=1.514;VarDP=65 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,457 0/1:31,34:65:99:.:912,0,843:18,13,11,23 +chrX 4801220 . G GT 1880.97 . AC=3;AF=1.00;AN=3;AS_AltDP=78;AS_QD=24.62;DP=98;ExcessHet=0.0000;FS=0.000;MQ=59.73;QD=24.62;SOR=0.976;VarDP=78 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:708,0:0,0,11,18 1/1:0,49:49:99:1212,145,0:0,0,23,26 +chrX 4801393 . G T 2413 . AC=3;AF=1.00;AN=3;AS_AltDP=72;AS_QD=33.93;DP=75;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.93;SOR=0.749;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,22:22:99:755,0:0,0,10,12 1/1:0,50:50:99:1688,150,0:0,0,25,25 +chrX 4802032 . C T 910 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=15.93;BaseQRankSum=0.321;DP=89;ExcessHet=0.0000;FS=2.159;MQ=60.00;MQRankSum=0;QD=15.93;ReadPosRankSum=0.351;SOR=0.464;VarDP=59 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,574 0/1:26,33:59:99:.:940,0,696:10,16,15,18 +chrX 4802744 . C T 728 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=14.58;BaseQRankSum=2.085;DP=82;ExcessHet=0.0000;FS=2.504;MQ=60.00;MQRankSum=0;QD=14.58;ReadPosRankSum=0.082;SOR=1.204;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,574 0/1:25,27:52:99:.:758,0,623:10,15,8,19 +chrX 4803296 . CT C 319.97 . AC=2;AF=0.667;AN=3;AS_AltDP=25;AS_QD=10.26;BaseQRankSum=0.967;DP=77;ExcessHet=0.0000;FS=22.525;MQ=58.38;MQRankSum=1.772;QD=10.26;ReadPosRankSum=0.549;SOR=2.113;VarDP=35 GT:AD:DP:GQ:PL:SB 1:3,6:9:58:58,0:2,1,3,3 0/1:7,19:26:49:301,0,49:6,1,3,16 +chrX 4804083 . T C 1751 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=31.25;DP=88;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.25;SOR=0.800;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:99:28:0,311 1/1:0,57:57:99:.:1781,170,0:0,0,27,30 +chrX 4804334 . T C 1694 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=30.79;DP=87;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.79;SOR=0.765;VarDP=56 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:99:28:0,311 1/1:0,56:56:99:.:1724,167,0:0,0,27,29 +chrX 4805865 . G A 751 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=12.60;BaseQRankSum=-1.015;DP=90;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=12.60;ReadPosRankSum=-0.556;SOR=0.579;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:99:28:0,311 0/1:31,31:62:99:.:781,0,842:17,14,16,15 +chrX 4805945 . A G 608 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=11.19;BaseQRankSum=-0.467;DP=90;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=11.19;ReadPosRankSum=0.877;SOR=0.804;VarDP=57 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:99:28:0,311 0/1:32,25:57:99:.:638,0,880:15,17,11,14 +chrX 4806096 . T TTTTTAA 3332.97 . AC=3;AF=1.00;AN=3;AS_AltDP=78;AS_QD=31.79;DP=88;ExcessHet=0.0000;FS=0.000;MQ=59.97;QD=43.23;SOR=1.040;VarDP=78 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:1144,0:0,0,9,17 1/1:0,52:52:99:2228,156,0:0,0,24,28 +chrX 4807639 . G GTTTATC,T,C 2065 . AC=2,0,0;AF=0.667,0.00,0.00;AN=3;AS_AltDP=49,1,1;AS_QD=31.27,0.00,12.58;BaseQRankSum=-2.626;DP=81;ExcessHet=0.0000;FS=2.361;MQ=60.00;MQRankSum=0;QD=30.36;ReadPosRankSum=-0.153;SOR=0.401;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,27,0,0:27:99:1215,0,1215,1215:0,0,13,14 0/1:18,22,1,1:42:99:880,0,747,924,582,1591,641,803,1334,1517:12,6,16,8 +chrX 4808343 . T C 1626 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=20.70;BaseQRankSum=2.119;DP=83;ExcessHet=0.0000;FS=0.896;MQ=60.00;MQRankSum=0;QD=20.70;ReadPosRankSum=-1.439;SOR=0.582;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,35:35:99:1096,0:0,0,17,18 0/1:25,20:45:99:560,0,684:11,14,9,11 +chrX 4808747 . T C 2131 . AC=3;AF=1.00;AN=3;AS_AltDP=70;AS_QD=30.87;DP=72;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.87;SOR=0.750;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:708,0:0,0,10,14 1/1:0,46:46:99:1453,137,0:0,0,26,20 +chrX 4809840 . GA G 793.97 . AC=2;AF=0.667;AN=3;AS_AltDP=39;AS_QD=15.15;BaseQRankSum=0.943;DP=73;ExcessHet=0.0000;FS=1.109;MQ=60.00;MQRankSum=0;QD=15.15;ReadPosRankSum=1.197;SOR=0.534;VarDP=55 GT:AD:DP:GQ:PL:SB 1:0,18:18:99:430,0:0,0,11,7 0/1:16,21:37:99:403,0,251:7,9,8,13 +chrX 4810368 . CATA C 815.97 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=19.00;BaseQRankSum=-0.505;DP=79;ExcessHet=0.0000;FS=4.246;MQ=60.00;MQRankSum=0;QD=19.00;ReadPosRankSum=-0.159;SOR=0.610;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,624 0/1:23,22:45:99:.:855,0,899:9,14,12,10 +chrX 4810640 . C T 1554 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=20.31;BaseQRankSum=-0.342;DP=79;ExcessHet=0.0000;FS=0.919;MQ=60.00;MQRankSum=0;QD=20.31;ReadPosRankSum=-1.991;SOR=0.745;VarDP=78 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:947,0:0,0,14,15 0/1:25,24:49:99:637,0,663:13,12,11,13 +chrX 4810707 . G C 1489 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=19.99;BaseQRankSum=-1.029;DP=76;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=19.99;ReadPosRankSum=1.039;SOR=0.687;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:784,0:0,0,10,15 0/1:24,27:51:99:735,0,660:11,13,14,13 +chrX 4810821 . CA C,CAA,CAAA 400.97 . AC=1,1,0;AF=0.333,0.333,0.00;AN=3;AS_AltDP=12,7,2;AS_QD=12.25,32.14,24.27;DP=71;ExcessHet=0.0000;FS=0.000;MQ=58.62;QD=20.95;SOR=0.784;VarDP=21 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:22:99:22:0,505,505,505 1/2:0,12,7,2:21:89:.:440,293,423,215,0,237,286,89,253,428:0,0,11,10 +chrX 4810903 . C T 828 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=30.64;DP=64;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.64;SOR=1.179;VarDP=28 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,28:28:99:.:858,0:0,0,17,11 0/0:.:39:39:36:0,39,1042 +chrX 4811736 . A ATTTTTT,ATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 848.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=13,9;AS_QD=28.05,23.67;BaseQRankSum=0.674;DP=53;ExcessHet=0.0000;FS=1.976;MQ=59.05;MQRankSum=-0.949;QD=31.71;ReadPosRankSum=-1.4;SOR=1.609;VarDP=28 GT:AD:DP:GQ:PL:SB 1:0,13,0:13:99:533,0,534:0,0,2,11 0/2:6,0,9:15:99:355,378,635,0,257,230:3,3,5,4 +chrX 4812009 . C T 1248 . AC=2;AF=0.667;AN=3;AS_AltDP=45;AS_QD=18.52;BaseQRankSum=-0.351;DP=74;ExcessHet=0.0000;FS=5.111;MQ=59.95;MQRankSum=1.042;QD=18.52;ReadPosRankSum=0.165;SOR=0.266;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,21:21:99:640,0:0,0,10,11 0/1:24,24:48:99:638,0,650:8,16,12,12 +chrX 4812524 . T C 479 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=10.60;BaseQRankSum=-2.424;DP=75;ExcessHet=0.0000;FS=1.133;MQ=60.00;MQRankSum=0;QD=10.60;ReadPosRankSum=-0.22;SOR=0.460;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:25:99:25:0,556 0/1:28,20:48:99:.:509,0,829:12,16,10,10 +chrX 4812739 . A G 1408 . AC=2;AF=0.667;AN=3;AS_AltDP=35;AS_QD=24.79;BaseQRankSum=-0.171;DP=60;ExcessHet=0.0000;FS=7.461;MQ=60.00;MQRankSum=0;QD=24.79;ReadPosRankSum=0.641;SOR=0.954;VarDP=58 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,16:16:99:.:.:720,0:.:0,0,11,5 0|1:23,19:42:99:0|1:4812739_A_G:718,0,898:4812739:9,14,10,9 +chrX 4812746 . A G 1396 . AC=2;AF=0.667;AN=3;AS_AltDP=35;AS_QD=23.77;BaseQRankSum=-0.493;DP=61;ExcessHet=0.0000;FS=9.358;MQ=60.00;MQRankSum=0;QD=23.77;ReadPosRankSum=1.626;SOR=1.154;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,17:17:99:.:.:745,0:.:0,0,12,5 0|1:25,18:43:99:0|1:4812739_A_G:681,0,955:4812739:10,15,10,8 +chrX 4813373 . A G 811 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=17.16;BaseQRankSum=0.931;DP=85;ExcessHet=0.0000;FS=8.103;MQ=60.00;MQRankSum=0;QD=17.16;ReadPosRankSum=1.048;SOR=1.094;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,333 0/1:20,29:49:99:.:841,0,517:12,8,11,18 +chrX 4814357 . G C 1754 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=20.04;BaseQRankSum=-0.379;DP=91;ExcessHet=0.0000;FS=3.079;MQ=60.00;MQRankSum=0;QD=20.04;ReadPosRankSum=0.187;SOR=0.404;VarDP=89 GT:AD:DP:GQ:PL:SB 1:1,35:36:99:1061,0:0,1,20,15 0/1:26,27:53:99:723,0,715:16,10,11,16 +chrX 4815621 . T C 1614 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=17.49;BaseQRankSum=-0.263;DP=98;ExcessHet=0.0000;FS=0.838;MQ=59.94;MQRankSum=0.986;QD=17.49;ReadPosRankSum=0.094;SOR=0.852;VarDP=94 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:828,0:0,0,18,9 0/1:35,32:67:99:816,0,935:22,13,21,11 +chrX 4816323 . T A 1594 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=20.82;BaseQRankSum=1.7;DP=84;ExcessHet=0.0000;FS=6.282;MQ=60.00;MQRankSum=0;QD=20.82;ReadPosRankSum=-0.027;SOR=0.568;VarDP=78 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:869,0:0,0,13,12 0/1:26,27:53:99:755,0,692:10,16,15,12 +chrX 4816700 . G A 2697 . AC=3;AF=1.00;AN=3;AS_AltDP=82;AS_QD=33.26;DP=85;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.26;SOR=0.742;VarDP=82 GT:AD:DP:GQ:PL:SB 1:0,36:36:99:1200,0:0,0,20,16 1/1:0,46:46:99:1527,138,0:0,0,22,24 +chrX 4817413 . C T 656 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=13.45;BaseQRankSum=0.343;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.45;ReadPosRankSum=-0.302;SOR=0.765;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,522 0/1:25,26:51:99:.:686,0,656:12,13,12,14 +chrX 4818361 . T C 1693 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=24.27;BaseQRankSum=-0.687;DP=72;ExcessHet=0.0000;FS=1.026;MQ=60.00;MQRankSum=0;QD=24.27;ReadPosRankSum=0.314;SOR=0.502;VarDP=71 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,28:28:99:.:.:852,0:.:0,0,16,12 0|1:19,24:43:99:0|1:4818361_T_C:871,0,714:4818361:8,11,9,15 +chrX 4818376 . C T 772 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=18.65;BaseQRankSum=1.117;DP=74;ExcessHet=0.0000;FS=1.177;MQ=60.00;MQRankSum=0;QD=18.65;ReadPosRankSum=0.462;SOR=0.973;VarDP=43 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:29:99:29:.:.:0,626 0|1:21,22:43:99:.:0|1:4818361_T_C:802,0,784:4818361:10,11,9,13 +chrX 4819831 . T C 1249 . AC=2;AF=0.667;AN=3;AS_AltDP=45;AS_QD=18.81;BaseQRankSum=0;DP=71;ExcessHet=0.0000;FS=2.118;MQ=60.00;MQRankSum=0;QD=18.81;ReadPosRankSum=0.049;SOR=0.534;VarDP=68 GT:AD:DP:GQ:PL:SB 1:1,17:18:99:556,0:0,1,10,7 0/1:22,28:50:99:723,0,595:13,9,12,16 +chrX 4820102 . G T 1013 . AC=1;AF=0.333;AN=3;AS_AltDP=37;AS_QD=17.10;BaseQRankSum=1.99;DP=94;ExcessHet=0.0000;FS=5.323;MQ=60.00;MQRankSum=0;QD=17.10;ReadPosRankSum=0.724;SOR=1.432;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,720 0/1:24,37:61:99:.:1043,0,530:12,12,24,13 +chrX 4820155 . C T 1892 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=22.88;BaseQRankSum=1.495;DP=88;ExcessHet=0.0000;FS=2.096;MQ=60.00;MQRankSum=0;QD=22.88;ReadPosRankSum=0.18;SOR=0.422;VarDP=84 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:898,0:0,0,15,12 0/1:22,35:57:99:1024,0,553:14,8,19,16 +chrX 4820306 . A T 1586 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=20.46;BaseQRankSum=-1.931;DP=87;ExcessHet=0.0000;FS=3.367;MQ=60.00;MQRankSum=0;QD=20.46;ReadPosRankSum=-1.166;SOR=0.368;VarDP=79 GT:AD:DP:GQ:PL:SB 1:0,20:20:99:691,0:0,0,9,11 0/1:25,34:59:99:925,0,667:8,17,14,20 +chrX 4820845 . A ATCTG 2129.97 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=27.81;BaseQRankSum=1.271;DP=81;ExcessHet=0.0000;FS=4.707;MQ=60.00;MQRankSum=0;QD=27.81;ReadPosRankSum=2.384;SOR=0.837;VarDP=78 GT:AD:DP:GQ:PL:SB 1:0,17:17:99:733,0:0,0,7,10 0/1:25,36:61:99:1436,0,860:14,11,16,20 +chrX 4821929 . GGAGAGAGGGAGAGAGAGA G,GGAGA 1798.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=25,25;AS_QD=20.89,19.96;BaseQRankSum=-0.624;DP=72;ExcessHet=0.0000;FS=1.036;MQ=59.92;MQRankSum=-0.85;QD=26.26;ReadPosRankSum=0.862;SOR=0.474;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,25,0:25:99:940,0,940:0,0,17,8 0/2:20,0,25:45:99:898,957,1652,0,695,619:13,7,12,13 +chrX 4822097 . A G,AAG 688 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=0,20;AS_QD=28.92,34.09;DP=75;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=35.90;SOR=0.892;VarDP=20 GT:AD:DP:GQ:MIN_DP:PL:SB 2:0,0,20:20:99:.:718,966,0:0,0,11,9 0/0:.:49:53:49:0,53,1033,53,1033,1033 +chrX 4822152 . A C 1470 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=20.83;BaseQRankSum=-0.226;DP=74;ExcessHet=0.0000;FS=2.128;MQ=60.00;MQRankSum=0;QD=20.83;ReadPosRankSum=0.193;SOR=0.472;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:798,0:0,0,11,14 0/1:21,26:47:99:702,0,532:8,13,12,14 +chrX 4823430 . T G 1479 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=20.39;BaseQRankSum=-1.058;DP=77;ExcessHet=0.0000;FS=0.000;MQ=59.96;MQRankSum=-0.895;QD=20.39;ReadPosRankSum=1.035;SOR=0.605;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:862,0:0,0,16,11 0/1:22,25:47:99:647,0,582:10,12,9,16 +chrX 4823902 . C G 1243 . AC=2;AF=0.667;AN=3;AS_AltDP=44;AS_QD=17.44;BaseQRankSum=-0.203;DP=76;ExcessHet=0.0000;FS=1.994;MQ=60.00;MQRankSum=0;QD=17.44;ReadPosRankSum=0.472;SOR=1.021;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:704,0:0,0,15,8 0/1:29,21:50:99:569,0,847:15,14,11,10 +chrX 4823965 . A G 1255 . AC=2;AF=0.667;AN=3;AS_AltDP=46;AS_QD=16.91;BaseQRankSum=-1.253;DP=81;ExcessHet=0.0000;FS=1.942;MQ=60.00;MQRankSum=0;QD=16.91;ReadPosRankSum=-0.797;SOR=0.777;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,20:20:99:620,0:0,0,8,12 0/1:30,26:56:99:665,0,834:16,14,13,13 +chrX 4824012 . T C 649 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=9.84;BaseQRankSum=0.064;DP=100;ExcessHet=0.0000;FS=8.508;MQ=60.00;MQRankSum=0;QD=9.84;ReadPosRankSum=0.756;SOR=0.347;VarDP=69 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,590 0/1:42,27:69:99:.:679,0,1170:28,14,13,14 +chrX 4824434 . A C 1634 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=20.05;BaseQRankSum=0.714;DP=85;ExcessHet=0.0000;FS=0.889;MQ=60.00;MQRankSum=0;QD=20.05;ReadPosRankSum=-0.623;SOR=0.784;VarDP=83 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:889,0:0,0,11,16 0/1:27,29:56:99:775,0,701:13,14,19,10 +chrX 4825219 . G A 2628 . AC=2;AF=0.667;AN=3;AS_AltDP=67;AS_QD=27.98;BaseQRankSum=2.116;DP=96;ExcessHet=0.0000;FS=1.851;MQ=60.00;MQRankSum=0;QD=27.98;ReadPosRankSum=0.61;SOR=0.743;VarDP=95 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,34:34:99:.:.:1438,0:.:0,0,19,15 0|1:28,33:61:99:0|1:4825219_G_A:1220,0,1066:4825219:15,13,12,21 +chrX 4825239 . A G 2564 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=28.20;BaseQRankSum=1.46;DP=92;ExcessHet=0.0000;FS=1.823;MQ=60.00;MQRankSum=0;QD=28.20;ReadPosRankSum=-0.511;SOR=0.555;VarDP=92 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,29:29:99:.:.:1305,0:.:0,0,18,11 0|1:29,34:63:99:0|1:4825219_G_A:1289,0,1115:4825219:16,13,13,21 +chrX 4825247 . A G 2337 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=27.21;BaseQRankSum=0.154;DP=87;ExcessHet=0.0000;FS=1.867;MQ=60.00;MQRankSum=0;QD=27.21;ReadPosRankSum=-1.154;SOR=0.599;VarDP=87 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,27:27:99:.:.:1193,0:.:0,0,16,11 0|1:29,31:60:99:0|1:4825219_G_A:1174,0,1124:4825219:16,13,12,19 +chrX 4825368 . ATATCTATCTATCTATC A 1766.97 . AC=2;AF=0.667;AN=3;AS_AltDP=48;AS_QD=23.45;BaseQRankSum=0.155;DP=95;ExcessHet=0.0000;FS=1.904;MQ=60.00;MQRankSum=0;QD=23.45;ReadPosRankSum=-0.234;SOR=0.814;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:1341,0:0,0,11,19 0/1:29,18:47:99:465,0,1106:15,14,11,7 +chrX 4825775 . C T 1028 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=34.13;DP=81;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=34.13;SOR=0.892;VarDP=31 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,31:31:99:.:1058,0:0,0,17,14 0/0:.:49:85:49:0,85,1183 +chrX 4826001 . C T 1914 . AC=2;AF=0.667;AN=3;AS_AltDP=65;AS_QD=21.13;BaseQRankSum=-0.744;DP=96;ExcessHet=0.0000;FS=4.567;MQ=60.00;MQRankSum=0;QD=21.13;ReadPosRankSum=-0.671;SOR=0.331;VarDP=92 GT:AD:DP:GQ:PL:SB 1:0,35:35:99:1133,0:0,0,20,15 0/1:27,30:57:99:811,0,705:19,8,18,12 +chrX 4826727 . C G 1315 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=20.07;BaseQRankSum=-1.674;DP=71;ExcessHet=0.0000;FS=3.704;MQ=60.00;MQRankSum=0;QD=20.07;ReadPosRankSum=0.448;SOR=0.905;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:749,0:0,0,11,12 0/1:20,24:44:99:596,0,533:11,9,9,15 +chrX 4827858 . C T 1811 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=20.92;BaseQRankSum=2.662;DP=91;ExcessHet=0.0000;FS=0.932;MQ=59.92;MQRankSum=0;QD=20.92;ReadPosRankSum=1.277;SOR=0.531;VarDP=88 GT:AD:DP:GQ:PL:SB 1:1,37:38:99:1211,0:0,1,24,13 0/1:27,23:50:99:630,0,723:20,7,16,7 +chrX 4828964 . C A 927 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=33.00;DP=85;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.00;SOR=0.760;VarDP=29 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,29:29:99:.:957,0:0,0,14,15 0/0:.:55:66:55:0,66,1097 +chrX 4829023 . A G 824 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=32.85;DP=81;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.85;SOR=0.846;VarDP=26 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,26:26:99:.:854,0:0,0,14,12 0/0:.:55:66:55:0,66,1097 +chrX 4829176 . CACAT C 511.97 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=32.41;DP=79;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.41;SOR=0.804;VarDP=17 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,17:17:99:.:551,0:0,0,9,8 0/0:.:55:66:55:0,66,1097 +chrX 4829180 . T *,C 526 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=0,20;AS_QD=0.00,13.56;BaseQRankSum=0.465;DP=69;ExcessHet=0.0000;FS=2.450;MQ=60.00;MQRankSum=0;QD=13.56;ReadPosRankSum=1.705;SOR=0.379;VarDP=41 GT:AD:DP:GQ:PL:SB 1:0,17,0:17:99:551,0,551:0,0,9,8 0/2:21,0,20:41:99:556,560,1231,0,634,563:13,7,9,7 +chrX 4830956 . G T 1067 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=33.24;DP=61;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.24;SOR=1.981;VarDP=33 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,33:33:99:.:1097,0:0,0,24,9 0/0:.:37:29:26:0,29,725 +chrX 4831544 . T C 819 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=33.96;DP=53;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.96;SOR=1.136;VarDP=25 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,25:25:99:.:849,0:0,0,10,15 0/0:.:37:29:26:0,29,725 +chrX 4831771 . A G 862 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=30.76;DP=55;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.76;SOR=0.760;VarDP=29 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,29:29:99:.:892,0:0,0,14,15 0/0:.:37:29:26:0,29,725 +chrX 4832875 . C T 917 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=33.82;DP=56;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.82;SOR=0.693;VarDP=28 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,28:28:99:.:947,0:0,0,14,14 0/0:.:37:29:26:0,29,725 +chrX 4833246 . A G 774 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=33.50;DP=50;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.50;SOR=1.802;VarDP=24 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,24:24:99:.:804,0:0,0,7,17 0/0:.:37:29:26:0,29,725 +chrX 4833576 . C A 832 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=30.79;BaseQRankSum=-0.306;DP=54;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=30.79;ReadPosRankSum=0.495;SOR=0.335;VarDP=28 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,27:28:99:.:862,0:0,1,14,13 0/0:.:37:29:26:0,29,725 +chrX 4833659 . A G 997 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=32.09;DP=58;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.09;SOR=0.957;VarDP=32 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,32:32:99:.:1027,0:0,0,14,18 0/0:.:37:29:26:0,29,725 +chrX 4834498 . G A 356 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=9.19;BaseQRankSum=1.367;DP=70;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=9.19;ReadPosRankSum=1.002;SOR=0.607;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:27:99:27:0,327 0/1:27,15:42:99:.:386,0,737:12,15,7,8 +chrX 4834604 . A G 764 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=30.54;BaseQRankSum=-0.32;DP=77;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=30.54;ReadPosRankSum=-0.867;SOR=0.330;VarDP=26 GT:AD:DP:GQ:MIN_DP:PL:SB 1:1,25:26:99:.:794,0:0,1,11,14 0/0:.:50:92:50:0,92,1261 +chrX 4834712 . T G 923 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=31.77;DP=80;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.77;SOR=0.826;VarDP=30 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,30:30:99:.:953,0:0,0,16,14 0/0:.:50:92:50:0,92,1261 +chrX 4834804 . G A 562 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=11.84;BaseQRankSum=-2.729;DP=74;ExcessHet=0.0000;FS=1.117;MQ=60.00;MQRankSum=0;QD=11.84;ReadPosRankSum=1.145;SOR=0.432;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:24:99:24:0,575 0/1:25,25:50:99:.:592,0,684:9,16,11,14 +chrX 4834940 . T C 759 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=32.88;DP=69;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.88;SOR=0.693;VarDP=24 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,24:24:99:.:789,0:0,0,12,12 0/0:.:45:82:45:0,82,1148 +chrX 4835117 . G T 166 . AC=1;AF=0.333;AN=3;AS_AltDP=9;AS_QD=5.03;BaseQRankSum=1.322;DP=71;ExcessHet=0.0000;FS=3.333;MQ=60.00;MQRankSum=0;QD=5.03;ReadPosRankSum=1.101;SOR=1.402;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,640 0/1:30,9:39:99:.:196,0,861:15,15,3,6 +chrX 4835642 . T C 710 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=33.64;DP=70;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.64;SOR=0.874;VarDP=22 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,22:22:99:.:740,0:0,0,12,10 0/0:.:48:59:48:0,59,1043 +chrX 4835687 . G T 729 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=33.00;DP=73;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.00;SOR=1.426;VarDP=23 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,23:23:99:.:759,0:0,0,15,8 0/0:.:48:59:48:0,59,1043 +chrX 4835740 . C A 831 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=30.75;DP=76;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.75;SOR=0.997;VarDP=28 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,28:28:99:.:861,0:0,0,16,12 0/0:.:48:59:48:0,59,1043 +chrX 4835878 . T G 940 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=31.29;DP=80;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.29;SOR=1.044;VarDP=31 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,31:31:99:.:970,0:0,0,18,13 0/0:.:48:59:48:0,59,1043 +chrX 4837360 . A G 1038 . AC=1;AF=0.333;AN=3;AS_AltDP=31;AS_QD=34.45;DP=80;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=34.45;SOR=1.214;VarDP=31 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,31:31:99:.:1068,0:0,0,19,12 0/0:.:48:59:48:0,59,1043 +chrX 4837377 . A T 730 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=15.83;BaseQRankSum=0.534;DP=79;ExcessHet=0.0000;FS=1.098;MQ=60.00;MQRankSum=0;QD=15.83;ReadPosRankSum=0.628;SOR=0.527;VarDP=48 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,616 0/1:20,28:48:99:.:760,0,501:11,9,14,14 +chrX 4838937 . C CAT 863.97 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=27.46;DP=85;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=36.12;SOR=0.941;VarDP=25 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,25:25:99:.:903,0:0,0,11,14 0/0:.:56:47:56:0,47,1364 +chrX 4839145 . C T 598 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=16.10;BaseQRankSum=2.755;DP=64;ExcessHet=0.0000;FS=7.359;MQ=60.00;MQRankSum=0;QD=16.10;ReadPosRankSum=1.417;SOR=0.339;VarDP=39 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:24:99:24:.:.:0,487 0|1:22,17:39:99:.:0|1:4839145_C_T:628,0,805:4839145:6,16,9,8 +chrX 4839160 . A G 537 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=15.75;BaseQRankSum=-0.272;DP=61;ExcessHet=0.0000;FS=5.085;MQ=60.00;MQRankSum=0;QD=15.75;ReadPosRankSum=0.484;SOR=0.217;VarDP=36 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:24:99:24:.:.:0,487 0|1:21,15:36:99:.:0|1:4839145_C_T:567,0,803:4839145:6,15,7,8 +chrX 4839685 . G C 684 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=32.45;DP=74;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.45;SOR=0.874;VarDP=22 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,22:22:99:.:714,0:0,0,10,12 0/0:.:50:90:50:0,90,1121 +chrX 4840465 . G A 522 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=10.82;BaseQRankSum=0.183;DP=82;ExcessHet=0.0000;FS=3.925;MQ=60.00;MQRankSum=0;QD=10.82;ReadPosRankSum=-0.723;SOR=0.651;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,620 0/1:29,22:51:99:.:552,0,745:12,17,12,10 +chrX 4840945 . C T 927 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=31.90;DP=54;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.90;SOR=0.976;VarDP=30 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,30:30:99:.:957,0:0,0,17,13 0/0:.:25:20:23:0,20,671 +chrX 4841828 . CATATATATATATATATATAT C,CATATATATATAT,CATATATATATATATAT 1042.97 . AC=1,0,1;AF=0.333,0.00,0.333;AN=3;AS_AltDP=16,0,6;AS_QD=28.54,36.56,30.67;BaseQRankSum=0;DP=43;ExcessHet=0.0000;FS=0.000;MQ=59.38;MQRankSum=1.15;QD=45.08;ReadPosRankSum=0.792;SOR=1.329;VarDP=24 GT:AD:DP:GQ:PL:SB 1:0,16,0,0:16:99:668,0,668,668:0,0,9,7 0/3:2,0,0,6:8:27:414,371,593,274,547,703,0,95,79,27:1,1,5,1 +chrX 4841835 . A *,G 245 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=0,5;AS_QD=0.00,16.18;BaseQRankSum=0.071;DP=42;ExcessHet=0.0000;FS=1.453;MQ=58.88;MQRankSum=1.035;QD=16.18;ReadPosRankSum=2.215;SOR=1.230;VarDP=17 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,16,0:16:99:.:.:668,0,668:.:0,0,9,7 0|2:12,0,5:17:99:0|1:4841835_A_*:275,150,677,0,385,354:4841835:6,6,4,1 +chrX 4841849 . A C 638 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=29.97;DP=40;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=41.75;SOR=0.941;VarDP=16 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,16:16:99:.:668,0:0,0,9,7 0/0:.:26:27:23:0,27,405 +chrX 4842141 . G A 337 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=8.53;BaseQRankSum=1.532;DP=68;ExcessHet=0.0000;FS=2.932;MQ=60.00;MQRankSum=0;QD=8.53;ReadPosRankSum=0.969;SOR=0.275;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:25:99:25:0,422 0/1:28,15:43:99:.:367,0,764:19,9,8,7 +chrX 4842177 . GA G 661.97 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=31.86;DP=82;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.86;SOR=0.874;VarDP=22 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,22:22:99:.:701,0:0,0,10,12 0/0:.:54:84:54:0,84,1256 +chrX 4842808 . T C 2948 . AC=3;AF=1.00;AN=3;AS_AltDP=97;AS_QD=30.08;BaseQRankSum=1.551;DP=103;ExcessHet=0.0000;FS=6.902;MQ=60.00;MQRankSum=0;QD=30.08;ReadPosRankSum=0.42;SOR=0.515;VarDP=99 GT:AD:DP:GQ:PL:SB 1:1,32:33:99:975,0:0,1,21,11 1/1:1,65:66:99:2003,173,0:0,1,33,32 +chrX 4844305 . C T 644 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=33.70;DP=73;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.70;SOR=1.402;VarDP=20 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,20:20:99:.:674,0:0,0,13,7 0/0:.:53:80:53:0,80,1315 +chrX 4844421 . A G 725 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=34.32;DP=75;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=34.32;SOR=2.303;VarDP=22 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,22:22:99:.:755,0:0,0,5,17 0/0:.:53:80:53:0,80,1315 +chrX 4844555 . C A 611 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=11.65;BaseQRankSum=-1.54;DP=91;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=11.65;ReadPosRankSum=-1.366;SOR=0.775;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,630 0/1:29,26:55:99:.:641,0,803:15,14,14,12 +chrX 4845327 . C A 916 . AC=1;AF=0.333;AN=3;AS_AltDP=35;AS_QD=15.26;BaseQRankSum=0.876;DP=97;ExcessHet=0.0000;FS=4.985;MQ=60.00;MQRankSum=0;QD=15.26;ReadPosRankSum=-0.007;SOR=0.633;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,630 0/1:27,35:62:99:.:946,0,658:11,16,19,16 +chrX 4845895 . A G 1561 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=21.79;BaseQRankSum=-1.337;DP=76;ExcessHet=0.0000;FS=1.040;MQ=60.00;MQRankSum=0;QD=21.79;ReadPosRankSum=0.903;SOR=0.555;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:987,0:0,0,17,14 0/1:18,24:42:99:604,0,455:10,8,10,14 +chrX 4846273 . G C 854 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=19.22;BaseQRankSum=-0.027;DP=80;ExcessHet=0.0000;FS=3.072;MQ=60.00;MQRankSum=0;QD=19.22;ReadPosRankSum=-0.427;SOR=0.260;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,783 0/1:16,30:46:99:.:884,0,407:13,3,20,10 +chrX 4846313 . C T 1908 . AC=2;AF=0.667;AN=3;AS_AltDP=64;AS_QD=23.35;BaseQRankSum=-0.628;DP=85;ExcessHet=0.0000;FS=9.501;MQ=60.00;MQRankSum=0;QD=23.35;ReadPosRankSum=1.052;SOR=0.165;VarDP=83 GT:AD:DP:GQ:PL:SB 1:0,36:36:99:1136,0:0,0,20,16 0/1:19,28:47:99:802,0,509:15,4,17,11 +chrX 4846517 . G A 1878 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=24.46;BaseQRankSum=0.266;DP=80;ExcessHet=0.0000;FS=2.344;MQ=60.00;MQRankSum=0;QD=24.46;ReadPosRankSum=-1.145;SOR=0.951;VarDP=78 GT:AD:DP:GQ:PL:SB 1:0,34:34:99:1142,0:0,0,13,21 0/1:17,27:44:99:766,0,428:9,8,13,14 +chrX 4847073 . T C 1128 . AC=2;AF=0.667;AN=3;AS_AltDP=40;AS_QD=19.97;BaseQRankSum=-0.645;DP=60;ExcessHet=0.0000;FS=1.073;MQ=60.00;MQRankSum=0;QD=19.97;ReadPosRankSum=-1.347;SOR=0.902;VarDP=58 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:749,0:0,0,14,10 0/1:18,16:34:99:409,0,504:9,9,8,8 +chrX 4847736 . A G 1450 . AC=2;AF=0.667;AN=3;AS_AltDP=50;AS_QD=21.14;BaseQRankSum=-1.794;DP=74;ExcessHet=0.0000;FS=5.428;MQ=59.17;MQRankSum=-0.975;QD=21.14;ReadPosRankSum=0.886;SOR=0.260;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:982,0:0,0,15,16 0/1:20,19:39:99:498,0,578:14,6,12,7 +chrX 4848143 . T TG 3271.97 . AC=3;AF=1.00;AN=3;AS_AltDP=89;AS_QD=31.67;DP=92;ExcessHet=0.0000;FS=0.000;MQ=59.75;QD=37.20;SOR=0.715;VarDP=89 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:1148,0:0,0,15,16 1/1:0,58:58:99:2163,175,0:0,0,29,29 +chrX 4848774 . C CAT 1614.97 . AC=2;AF=0.667;AN=3;AS_AltDP=49;AS_QD=22.35;BaseQRankSum=1.171;DP=86;ExcessHet=0.0000;FS=2.026;MQ=60.00;MQRankSum=0;QD=22.35;ReadPosRankSum=1.927;SOR=0.852;VarDP=74 GT:AD:DP:GQ:PL:SB 1:1,26:27:99:945,0:0,1,11,15 0/1:24,23:47:99:709,0,771:12,12,16,7 +chrX 4849299 . A G 1793 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=21.45;BaseQRankSum=-0.412;DP=90;ExcessHet=0.0000;FS=8.448;MQ=60.00;MQRankSum=0;QD=21.45;ReadPosRankSum=1.514;SOR=0.573;VarDP=85 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:992,0:0,0,20,11 0/1:23,31:54:99:831,0,583:8,15,14,17 +chrX 4849349 . C T 1671 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=20.25;BaseQRankSum=0.171;DP=86;ExcessHet=0.0000;FS=17.936;MQ=60.00;MQRankSum=0;QD=20.25;ReadPosRankSum=-1.412;SOR=0.811;VarDP=84 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:908,0:0,0,18,11 0/1:25,30:55:99:793,0,615:7,18,17,13 +chrX 4850121 . C A 1419 . AC=2;AF=0.667;AN=3;AS_AltDP=48;AS_QD=20.41;BaseQRankSum=-1.034;DP=73;ExcessHet=0.0000;FS=2.174;MQ=60.00;MQRankSum=0;QD=20.41;ReadPosRankSum=-0.804;SOR=0.463;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:923,0:0,0,17,11 0/1:23,20:43:99:526,0,650:16,7,13,7 +chrX 4851653 . T C 1949 . AC=2;AF=0.667;AN=3;AS_AltDP=65;AS_QD=18.67;BaseQRankSum=0.035;DP=108;ExcessHet=0.0000;FS=6.316;MQ=60.00;MQRankSum=0;QD=18.67;ReadPosRankSum=0.291;SOR=0.327;VarDP=106 GT:AD:DP:GQ:PL:SB 1:0,40:40:99:1340,0:0,0,20,20 0/1:41,25:66:99:639,0,1176:27,14,15,10 +chrX 4852227 . C T 1660 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=19.65;BaseQRankSum=1.155;DP=91;ExcessHet=0.0000;FS=0.000;MQ=59.60;MQRankSum=-1.774;QD=19.65;ReadPosRankSum=0.679;SOR=0.669;VarDP=86 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:948,0:0,0,11,18 0/1:29,28:57:99:742,0,722:13,16,15,13 +chrX 4852243 . A ATATTTTATTTTATTT,ATATTTTATTTTATTTTATTT 1862.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=24,24;AS_QD=22.31,19.96;BaseQRankSum=0.896;DP=90;ExcessHet=0.0000;FS=3.562;MQ=59.36;MQRankSum=-1.913;QD=27.57;ReadPosRankSum=-0.285;SOR=0.678;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,24,0:24:99:1004,0,1006:0,0,10,14 0/2:21,0,24:45:99:898,964,1772,0,808,736:9,12,16,8 +chrX 4853183 . G A 1734 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=20.05;BaseQRankSum=1.145;DP=88;ExcessHet=0.0000;FS=9.403;MQ=60.00;MQRankSum=0;QD=20.05;ReadPosRankSum=1.616;SOR=0.728;VarDP=88 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:909,0:0,0,10,17 0/1:30,31:61:99:855,0,758:11,19,23,8 +chrX 4853581 . G C 1703 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=19.47;BaseQRankSum=-1.881;DP=90;ExcessHet=0.0000;FS=7.512;MQ=60.00;MQRankSum=0;QD=19.47;ReadPosRankSum=0.18;SOR=0.257;VarDP=89 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:1067,0:0,0,15,18 0/1:29,27:56:99:666,0,781:9,20,13,14 +chrX 4854152 . T C 1766 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=20.64;BaseQRankSum=-0.659;DP=91;ExcessHet=0.0000;FS=0.894;MQ=60.00;MQRankSum=0;QD=20.64;ReadPosRankSum=-0.781;SOR=0.556;VarDP=87 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:962,0:0,0,20,11 0/1:26,30:56:99:834,0,715:16,10,15,15 +chrX 4854290 . T TG 2214.97 . AC=2;AF=0.667;AN=3;AS_AltDP=65;AS_QD=25.33;BaseQRankSum=0.403;DP=92;ExcessHet=0.0000;FS=0.897;MQ=60.00;MQRankSum=0;QD=25.33;ReadPosRankSum=0.382;SOR=0.854;VarDP=89 GT:AD:DP:GQ:PL:SB 1:0,34:34:99:1260,0:0,0,15,19 0/1:24,31:55:99:994,0,729:12,12,15,16 +chrX 4854439 . T A 680 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=11.64;BaseQRankSum=-3.255;DP=97;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=11.64;ReadPosRankSum=0.195;SOR=0.656;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:35:99:35:0,1017 0/1:33,28:61:99:.:710,0,962:15,18,13,15 +chrX 4854453 . T G 2123 . AC=2;AF=0.667;AN=3;AS_AltDP=71;AS_QD=21.53;BaseQRankSum=3.122;DP=100;ExcessHet=0.0000;FS=4.222;MQ=60.00;MQRankSum=0;QD=21.53;ReadPosRankSum=0.861;SOR=0.608;VarDP=100 GT:AD:DP:GQ:PL:SB 1:0,38:38:99:1216,0:0,0,21,17 0/1:29,33:62:99:937,0,692:12,17,17,16 +chrX 4854466 . C G 2103 . AC=2;AF=0.667;AN=3;AS_AltDP=70;AS_QD=21.77;BaseQRankSum=1.993;DP=100;ExcessHet=0.0000;FS=2.957;MQ=60.00;MQRankSum=0;QD=21.77;ReadPosRankSum=0.178;SOR=0.532;VarDP=98 GT:AD:DP:GQ:PL:SB 1:0,38:38:99:1261,0:0,0,20,18 0/1:28,32:60:99:872,0,703:12,16,16,16 +chrX 4855001 . A G 1978 . AC=2;AF=0.667;AN=3;AS_AltDP=70;AS_QD=20.70;BaseQRankSum=-1.431;DP=98;ExcessHet=0.0000;FS=0.856;MQ=60.00;MQRankSum=0;QD=20.70;ReadPosRankSum=0.146;SOR=0.752;VarDP=97 GT:AD:DP:GQ:PL:SB 1:0,34:34:99:1056,0:0,0,17,17 0/1:27,36:63:99:952,0,708:13,14,20,16 +chrX 4855342 . T C 1777 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=19.43;BaseQRankSum=-1.601;DP=97;ExcessHet=0.0000;FS=9.009;MQ=60.00;MQRankSum=0;QD=19.43;ReadPosRankSum=-1.81;SOR=0.291;VarDP=93 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:953,0:0,0,14,15 0/1:30,34:64:99:854,0,786:10,20,18,16 +chrX 4855586 . C CAG 2131.97 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=28.19;BaseQRankSum=-0.97;DP=79;ExcessHet=0.0000;FS=2.020;MQ=59.94;MQRankSum=0;QD=28.19;ReadPosRankSum=0.692;SOR=0.588;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:1283,0:0,0,14,15 0/1:25,23:48:99:888,0,957:14,11,11,12 +chrX 4855837 . C T 564 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=11.88;BaseQRankSum=-2.113;DP=80;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=11.88;ReadPosRankSum=-1.34;SOR=0.693;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:27:99:27:0,694 0/1:26,24:50:99:.:594,0,723:13,13,12,12 +chrX 4856046 . G A 1471 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=18.30;BaseQRankSum=-0.343;DP=83;ExcessHet=0.0000;FS=1.912;MQ=60.00;MQRankSum=0;QD=18.30;ReadPosRankSum=-0.528;SOR=0.445;VarDP=82 GT:AD:DP:GQ:PL:SB 1:1,22:23:99:675,0:1,0,12,10 0/1:28,31:59:99:826,0,752:16,12,15,16 +chrX 4857078 . T C 1883 . AC=2;AF=0.667;AN=3;AS_AltDP=64;AS_QD=18.39;BaseQRankSum=1.197;DP=110;ExcessHet=0.0000;FS=2.629;MQ=59.90;MQRankSum=0;QD=18.39;ReadPosRankSum=0.201;SOR=0.446;VarDP=104 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:977,0:0,0,17,13 0/1:40,34:74:99:936,0,1099:17,23,15,19 +chrX 4858621 . A C 1595 . AC=2;AF=0.667;AN=3;AS_AltDP=41;AS_QD=21.38;BaseQRankSum=0.244;DP=77;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=21.38;ReadPosRankSum=2.077;SOR=0.640;VarDP=76 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,20:20:99:.:.:879,0:.:0,0,9,11 0|1:35,21:56:99:0|1:4858621_A_C:746,0,1270:4858621:14,21,8,13 +chrX 4858637 . G GTA 1617.97 . AC=2;AF=0.667;AN=3;AS_AltDP=41;AS_QD=22.70;BaseQRankSum=0.241;DP=76;ExcessHet=0.0000;FS=1.921;MQ=60.00;MQRankSum=0;QD=22.70;ReadPosRankSum=1.11;SOR=0.954;VarDP=73 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,20:20:99:.:.:895,0:.:0,0,10,10 0|1:32,21:53:99:0|1:4858621_A_C:762,0,1197:4858621:16,16,8,13 +chrX 4858672 . AAT A 762.97 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=22.91;BaseQRankSum=0.4;DP=66;ExcessHet=0.0000;FS=5.391;MQ=60.00;MQRankSum=0;QD=22.91;ReadPosRankSum=1.112;SOR=0.657;VarDP=35 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:25:99:25:0,685 0/1:12,23:35:99:.:802,0,435:4,8,13,10 +chrX 4858680 . T C 1068 . AC=2;AF=0.667;AN=3;AS_AltDP=39;AS_QD=17.16;BaseQRankSum=0.421;DP=66;ExcessHet=0.0000;FS=2.145;MQ=60.00;MQRankSum=0;QD=17.16;ReadPosRankSum=-1.314;SOR=0.914;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:802,0:0,0,13,14 0/1:25,12:37:99:296,0,964:13,12,4,8 +chrX 4858899 . T C 1532 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=17.55;BaseQRankSum=-2.107;DP=92;ExcessHet=0.0000;FS=9.164;MQ=60.00;MQRankSum=0;QD=17.55;ReadPosRankSum=0.173;SOR=1.505;VarDP=89 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:987,0:0,0,18,13 0/1:33,25:58:99:575,0,919:16,17,19,6 +chrX 4859007 . CACACATATAT C 1133.97 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=22.56;BaseQRankSum=-0.55;DP=93;ExcessHet=0.0000;FS=3.967;MQ=60.00;MQRankSum=0;QD=22.56;ReadPosRankSum=1.034;SOR=1.329;VarDP=52 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:99:28:0,610 0/1:22,30:52:99:.:1173,0,822:11,11,19,11 +chrX 4860495 . A AATG 2479.97 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=29.29;BaseQRankSum=0.666;DP=89;ExcessHet=0.0000;FS=1.935;MQ=60.00;MQRankSum=0;QD=29.29;ReadPosRankSum=1.602;SOR=0.716;VarDP=86 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:1464,0:0,0,18,15 0/1:26,27:53:99:1055,0,999:14,12,10,17 +chrX 4860529 . CTTTATTTA C 344.97 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=14.22;BaseQRankSum=1.786;DP=81;ExcessHet=0.0000;FS=8.570;MQ=60.00;MQRankSum=0;QD=14.22;ReadPosRankSum=-1.171;SOR=0.056;VarDP=27 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:26:99:26:0,630 0/1:15,12:27:99:.:384,0,592:14,1,8,4 +chrX 4860725 . TTGTG T,TTGTGTG 1627.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=28,22;AS_QD=26.05,25.39;BaseQRankSum=-0.118;DP=76;ExcessHet=0.0000;FS=0.000;MQ=59.99;MQRankSum=0;QD=32.69;ReadPosRankSum=-0.319;SOR=0.335;VarDP=51 GT:AD:DP:GQ:PL:SB 1:0,12,0:12:99:541,0,541:0,0,6,6 1/2:1,16,22:39:99:1126,579,897,580,0,542:0,1,16,22 +chrX 4860914 . C A 1543 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=18.95;BaseQRankSum=-0.196;DP=85;ExcessHet=0.0000;FS=4.457;MQ=59.93;MQRankSum=-0.934;QD=18.95;ReadPosRankSum=-1.672;SOR=0.336;VarDP=83 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:777,0:0,0,11,12 0/1:29,31:60:99:796,0,753:11,18,16,15 +chrX 4860942 . C T 1300 . AC=2;AF=0.667;AN=3;AS_AltDP=45;AS_QD=17.73;BaseQRankSum=0.844;DP=76;ExcessHet=0.0000;FS=12.142;MQ=60.00;MQRankSum=0;QD=17.73;ReadPosRankSum=-0.23;SOR=0.929;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,19:19:99:634,0:0,0,10,9 0/1:30,26:56:99:696,0,775:11,19,17,9 +chrX 4862139 . G A 1315 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=16.40;BaseQRankSum=-0.442;DP=89;ExcessHet=0.0000;FS=5.737;MQ=60.00;MQRankSum=0;QD=16.40;ReadPosRankSum=0.225;SOR=1.221;VarDP=82 GT:AD:DP:GQ:PL:SB 1:0,22:22:99:715,0:0,0,15,7 0/1:35,25:60:99:630,0,931:17,18,14,11 +chrX 4862545 . C T 1545 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=19.69;BaseQRankSum=0.812;DP=83;ExcessHet=0.0000;FS=9.873;MQ=60.00;MQRankSum=0;QD=19.69;ReadPosRankSum=0.919;SOR=0.940;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:953,0:0,0,11,18 0/1:28,23:51:99:622,0,774:17,11,10,13 +chrX 4863504 . C T 1361 . AC=2;AF=0.667;AN=3;AS_AltDP=48;AS_QD=18.80;BaseQRankSum=-0.109;DP=75;ExcessHet=0.0000;FS=4.789;MQ=60.00;MQRankSum=0;QD=18.80;ReadPosRankSum=-0.261;SOR=0.465;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:834,0:0,0,13,12 0/1:26,23:49:99:557,0,667:10,16,12,11 +chrX 4863759 . A G 1026 . AC=2;AF=0.667;AN=3;AS_AltDP=37;AS_QD=17.60;BaseQRankSum=-0.703;DP=60;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=17.60;ReadPosRankSum=1.451;SOR=0.610;VarDP=60 GT:AD:DP:GQ:PL:SB 1:0,20:20:99:660,0:0,0,10,10 0/1:23,17:40:99:396,0,620:13,10,10,7 +chrX 4864504 . GTATATATGTCCATATATAAATATATGAATATATAAATTTATATGTTCATATATAAATATATGAACATATAAATT G 1613.97 . AC=2;AF=0.667;AN=3;AS_AltDP=44;AS_QD=21.47;BaseQRankSum=0.404;DP=90;ExcessHet=0.0000;FS=4.510;MQ=59.75;MQRankSum=-1.648;QD=21.47;ReadPosRankSum=1.853;SOR=1.197;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,20:20:99:842,0:0,0,10,10 0/1:33,24:57:99:811,0,1262:16,17,17,7 +chrX 4864639 . C CATATGT 2921.97 . AC=3;AF=1.00;AN=3;AS_AltDP=67;AS_QD=32.73;DP=72;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.19;SOR=1.066;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:1035,0:0,0,14,9 1/1:0,44:44:99:1926,132,0:0,0,25,19 +chrX 4864758 . T TTATA 2456.97 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=28.36;BaseQRankSum=-0.747;DP=95;ExcessHet=0.0000;FS=7.790;MQ=60.00;MQRankSum=0;QD=28.36;ReadPosRankSum=-0.759;SOR=0.366;VarDP=88 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:1432,0:0,0,16,17 0/1:26,29:55:99:1064,0,1005:17,9,14,15 +chrX 4865205 . A C 2189 . AC=2;AF=0.667;AN=3;AS_AltDP=79;AS_QD=20.74;BaseQRankSum=1.385;DP=110;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=20.74;ReadPosRankSum=-0.406;SOR=0.718;VarDP=107 GT:AD:DP:GQ:PL:SB 1:1,46:47:99:1408,0:0,1,20,26 0/1:27,33:60:99:811,0,708:14,13,19,14 +chrX 4865281 . CATAT C 662.97 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=13.76;BaseQRankSum=1.044;DP=88;ExcessHet=0.0000;FS=5.839;MQ=60.00;MQRankSum=0;QD=13.76;ReadPosRankSum=0.633;SOR=0.819;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:35:99:35:0,948 0/1:32,19:51:99:.:702,0,1275:19,13,8,11 +chrX 4865354 . T C 1658 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=19.86;BaseQRankSum=-1.731;DP=88;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=19.86;ReadPosRankSum=0.447;SOR=0.730;VarDP=85 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:926,0:0,0,14,14 0/1:28,29:57:99:762,0,778:15,13,17,12 +chrX 4865567 . A AT 1567.97 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=19.60;BaseQRankSum=-0.471;DP=90;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=19.60;ReadPosRankSum=0.424;SOR=0.720;VarDP=82 GT:AD:DP:GQ:PL:SB 1:1,29:30:99:867,0:1,0,13,16 0/1:23,29:52:99:740,0,561:9,14,11,18 +chrX 4865937 . T C 1633 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=22.78;BaseQRankSum=-2.049;DP=77;ExcessHet=0.0000;FS=4.029;MQ=60.00;MQRankSum=0;QD=22.78;ReadPosRankSum=-0.496;SOR=0.301;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:888,0:0,0,13,14 0/1:16,30:46:99:775,0,420:5,11,13,17 +chrX 4866055 . G GTCA 1903.97 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=25.23;BaseQRankSum=-1.568;DP=81;ExcessHet=0.0000;FS=3.112;MQ=60.00;MQRankSum=0;QD=25.23;ReadPosRankSum=0.123;SOR=0.411;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:1260,0:0,0,15,13 0/1:30,19:49:99:683,0,1203:18,12,9,10 +chrX 4866764 . T TA 1537.97 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=20.48;BaseQRankSum=-2.089;DP=87;ExcessHet=0.0000;FS=0.934;MQ=59.85;MQRankSum=0;QD=20.48;ReadPosRankSum=1.351;SOR=0.593;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:942,0:0,0,18,11 0/1:24,24:48:99:635,0,640:11,13,9,15 +chrX 4866910 . C CA 1263.97 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=17.37;BaseQRankSum=-0.752;DP=94;ExcessHet=0.0000;FS=11.477;MQ=60.00;MQRankSum=0;QD=17.37;ReadPosRankSum=0.142;SOR=0.140;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:802,0:0,0,13,18 0/1:20,24:44:99:501,0,401:15,5,15,9 +chrX 4867317 . AAT A 466.97 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=13.68;BaseQRankSum=-0.852;DP=75;ExcessHet=0.0000;FS=2.864;MQ=59.56;MQRankSum=-0.973;QD=13.68;ReadPosRankSum=0.228;SOR=0.721;VarDP=37 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:33:99:33:0,283 0/1:19,18:37:99:.:506,0,578:11,8,8,10 +chrX 4867400 . TATATATATCAAATATATATCAAATATATATCATATATATCAAATATATATCAAATATATATC TATATATATCAAATATATATCATATATATCAAATATATATCAAATATATATC,T 176.97 . AC=1,0;AF=0.333,0.00;AN=3;AS_AltDP=3,0;AS_QD=6.17,2.78;BaseQRankSum=-1.382;DP=84;ExcessHet=0.0000;FS=2.483;MQ=59.24;MQRankSum=-1.638;QD=6.17;ReadPosRankSum=0.202;SOR=1.008;VarDP=35 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:33:99:33:0,283,283 0/1:32,3,0:35:99:.:216,0,1297,127,1309,1440:13,19,2,1 +chrX 4867411 . A AATATATATCATATATATCAAAT,* 1071.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=26,0;AS_QD=29.61,31.50;DP=78;ExcessHet=0.0000;FS=6.913;MQ=57.57;QD=42.73;SOR=0.878;VarDP=26 GT:AD:DP:GQ:PL:SB 1:0,26,0:26:99:1111,0,1111:0,0,15,11 0/2:32,0,3:35:99:216,227,1539,0,1325,1297:13,19,2,1 +chrX 4867444 . TATATATCAAATATATATC T,* 179.97 . AC=1,0;AF=0.333,0.00;AN=3;AS_AltDP=3,0;AS_QD=6.84,0.00;BaseQRankSum=0.875;DP=69;ExcessHet=0.0000;FS=2.455;MQ=58.98;MQRankSum=-1.534;QD=6.84;ReadPosRankSum=1.311;SOR=1.019;VarDP=32 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:31:99:31:.:.:0,387,387 0|1:29,3,0:32:99:.:0|1:4867444_TATATATCAAATATATATC_T:219,0,1188,127,1199,1329:4867444:12,17,2,1 +chrX 4871988 . T C 1700 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=20.60;BaseQRankSum=-0.368;DP=93;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=20.60;ReadPosRankSum=-1.57;SOR=0.775;VarDP=84 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:867,0:0,0,14,15 0/1:23,32:55:99:863,0,580:12,11,19,13 +chrX 4872814 . A AT 1996.97 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=22.62;BaseQRankSum=1.913;DP=97;ExcessHet=0.0000;FS=4.047;MQ=59.95;MQRankSum=0;QD=22.62;ReadPosRankSum=-0.43;SOR=1.025;VarDP=90 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:1169,0:0,0,17,12 0/1:35,26:61:99:867,0,1225:17,18,15,11 +chrX 4872888 . G A 1667 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=19.96;BaseQRankSum=0.063;DP=86;ExcessHet=0.0000;FS=11.913;MQ=60.00;MQRankSum=0;QD=19.96;ReadPosRankSum=1.502;SOR=0.155;VarDP=85 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:1072,0:0,0,17,15 0/1:29,24:53:99:625,0,774:8,21,11,13 +chrX 4873030 . C T 907 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=31.23;DP=87;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.23;SOR=0.976;VarDP=30 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,30:30:99:.:937,0:0,0,13,17 0/0:.:53:94:53:0,94,1259 +chrX 4874110 . C T 1393 . AC=2;AF=0.667;AN=3;AS_AltDP=49;AS_QD=19.23;BaseQRankSum=-2.521;DP=77;ExcessHet=0.0000;FS=3.349;MQ=60.00;MQRankSum=0;QD=19.23;ReadPosRankSum=0.286;SOR=0.441;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:943,0:0,0,16,13 0/1:25,20:45:99:480,0,714:15,10,8,12 +chrX 4874232 . C CGTGT 1236.97 . AC=2;AF=0.667;AN=3;AS_AltDP=32;AS_QD=21.63;BaseQRankSum=-1.638;DP=72;ExcessHet=0.0000;FS=0.992;MQ=60.00;MQRankSum=0;QD=21.63;ReadPosRankSum=-0.683;SOR=0.567;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,17:17:99:765,0:0,0,9,8 0/1:27,15:42:99:511,0,1053:17,10,10,5 +chrX 4874312 . A G 1043 . AC=2;AF=0.667;AN=3;AS_AltDP=38;AS_QD=15.78;BaseQRankSum=-0.483;DP=74;ExcessHet=0.0000;FS=0.930;MQ=60.00;MQRankSum=0;QD=15.78;ReadPosRankSum=-0.404;SOR=0.914;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,22:22:99:705,0:0,0,13,9 0/1:30,16:46:99:368,0,820:15,15,8,8 +chrX 4876030 . G A 1564 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=21.54;BaseQRankSum=2.48;DP=85;ExcessHet=0.0000;FS=3.510;MQ=60.00;MQRankSum=0;QD=21.54;ReadPosRankSum=-0.75;SOR=1.164;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:888,0:0,0,10,18 0/1:21,25:46:99:706,0,522:10,11,10,15 +chrX 4876118 . C CCCTTTCCCACCTGTATCCTCTCTCTCCTCTCTCTCCCCCTCCTCTCTCCCCCCCTCCTCTCTCCCCCCCTCCTCTCTCCCCCTCCTCTCCCTCCCCTTCCTCTCTCT 844.97 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=30.51;BaseQRankSum=-0.5;DP=45;ExcessHet=0.0000;FS=0.000;MQ=57.02;MQRankSum=3.191;QD=36.83;ReadPosRankSum=-0.516;SOR=0.425;VarDP=24 GT:AD:DP:GQ:MIN_DP:PL:SB 1:3,21:24:99:.:884,0:1,2,10,11 0/0:.:21:0:21:0,0,160 +chrX 4878378 . T C 1465 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=19.42;BaseQRankSum=-0.388;DP=78;ExcessHet=0.0000;FS=0.000;MQ=59.71;MQRankSum=0;QD=19.42;ReadPosRankSum=1.097;SOR=0.771;VarDP=77 GT:AD:DP:GQ:PL:SB 1:1,32:33:99:997,0:0,1,13,19 0/1:24,20:44:99:498,0,652:11,13,9,11 +chrX 4878576 . T C 1545 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=18.31;BaseQRankSum=1.21;DP=88;ExcessHet=0.0000;FS=7.370;MQ=60.00;MQRankSum=0;QD=18.31;ReadPosRankSum=1.05;SOR=0.260;VarDP=86 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:976,0:0,0,15,16 0/1:32,23:55:99:599,0,877:21,11,12,11 +chrX 4879430 . T G 937 . AC=2;AF=0.667;AN=3;AS_AltDP=33;AS_QD=15.85;BaseQRankSum=-0.094;DP=64;ExcessHet=0.0000;FS=3.556;MQ=60.00;MQRankSum=0;QD=15.85;ReadPosRankSum=0.107;SOR=0.448;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,19:19:99:651,0:0,0,6,13 0/1:28,14:42:99:316,0,787:17,11,10,4 +chrX 4881094 . C T 1540 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=20.39;BaseQRankSum=-1.6;DP=81;ExcessHet=0.0000;FS=2.099;MQ=59.89;MQRankSum=0;QD=20.39;ReadPosRankSum=0.011;SOR=0.425;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:1048,0:0,0,13,18 0/1:25,21:46:99:522,0,681:8,17,8,13 +chrX 4881145 . C T 454 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=11.80;BaseQRankSum=-1.921;DP=75;ExcessHet=0.0000;FS=6.803;MQ=60.00;MQRankSum=0;QD=11.80;ReadPosRankSum=-0.602;SOR=1.551;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:33:99:33:0,892 0/1:22,19:41:99:.:484,0,631:12,10,6,13 +chrX 4881351 . T C 1632 . AC=2;AF=0.667;AN=3;AS_AltDP=54;AS_QD=24.81;BaseQRankSum=-1.201;DP=71;ExcessHet=0.0000;FS=1.162;MQ=60.00;MQRankSum=0;QD=24.81;ReadPosRankSum=1.141;SOR=0.652;VarDP=67 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:889,0:0,0,12,15 0/1:13,27:40:99:773,0,332:7,6,14,13 +chrX 4881828 . T C 1642 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=20.39;BaseQRankSum=-0.991;DP=84;ExcessHet=0.0000;FS=1.966;MQ=60.00;MQRankSum=0;QD=20.39;ReadPosRankSum=-0.392;SOR=0.446;VarDP=82 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:938,0:0,0,14,15 0/1:26,27:53:99:734,0,735:11,15,14,13 +chrX 4882697 . C A 1521 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=19.15;BaseQRankSum=1.29;DP=84;ExcessHet=0.0000;FS=1.877;MQ=60.00;MQRankSum=0;QD=19.15;ReadPosRankSum=-0.092;SOR=0.709;VarDP=81 GT:AD:DP:GQ:PL:SB 1:1,31:32:99:1013,0:0,1,17,14 0/1:29,20:49:99:538,0,811:16,13,7,13 +chrX 4883871 . A C 2867 . AC=3;AF=1.00;AN=3;AS_AltDP=89;AS_QD=32.55;DP=91;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.55;SOR=0.859;VarDP=89 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:1031,0:0,0,17,15 1/1:0,57:57:99:1866,171,0:0,0,31,26 +chrX 4884994 . C G 2401 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=29.29;BaseQRankSum=-0.069;DP=85;ExcessHet=0.0000;FS=3.269;MQ=60.00;MQRankSum=0;QD=29.29;ReadPosRankSum=0.964;SOR=0.373;VarDP=83 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,28:28:99:.:.:1248,0:.:0,0,11,17 0|1:25,30:55:99:0|1:4884994_C_G:1183,0,948:4884994:9,16,16,14 +chrX 4884996 . G A 2401 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=29.29;BaseQRankSum=1.481;DP=85;ExcessHet=0.0000;FS=3.269;MQ=60.00;MQRankSum=0;QD=29.29;ReadPosRankSum=0.705;SOR=0.373;VarDP=83 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,28:28:99:.:.:1248,0:.:0,0,11,17 0|1:25,30:55:99:0|1:4884994_C_G:1183,0,948:4884994:9,16,16,14 +chrX 4885131 . A G 1371 . AC=2;AF=0.667;AN=3;AS_AltDP=49;AS_QD=22.24;BaseQRankSum=-1.575;DP=64;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=22.24;ReadPosRankSum=-0.762;SOR=0.569;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:744,0:0,0,12,12 0/1:14,25:39:99:657,0,345:6,8,11,14 +chrX 4885542 . C T 1587 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=19.02;BaseQRankSum=-2.227;DP=91;ExcessHet=0.0000;FS=5.842;MQ=60.00;MQRankSum=0;QD=19.02;ReadPosRankSum=2.039;SOR=0.513;VarDP=85 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:868,0:0,0,15,12 0/1:28,30:58:99:749,0,780:17,11,12,18 +chrX 4886631 . A C 1618 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=17.53;BaseQRankSum=1.398;DP=97;ExcessHet=0.0000;FS=15.282;MQ=60.00;MQRankSum=0;QD=17.53;ReadPosRankSum=1.0;SOR=0.572;VarDP=94 GT:AD:DP:GQ:PL:SB 1:1,25:26:99:744,0:0,1,9,16 0/1:32,36:68:99:904,0,869:23,9,18,18 +chrX 4888444 . GGATT G 2472.97 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=31.40;BaseQRankSum=1.288;DP=84;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=31.40;ReadPosRankSum=-2.025;SOR=0.591;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:1388,0:0,0,19,12 0/1:20,29:49:99:1124,0,742:12,8,15,14 +chrX 4889291 . C T 1296 . AC=2;AF=0.667;AN=3;AS_AltDP=42;AS_QD=21.05;BaseQRankSum=1.203;DP=66;ExcessHet=0.0000;FS=1.008;MQ=60.00;MQRankSum=0;QD=21.05;ReadPosRankSum=0.999;SOR=0.713;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:859,0:0,0,15,10 0/1:21,17:38:99:467,0,575:11,10,5,12 +chrX 4889574 . T C 1369 . AC=2;AF=0.667;AN=3;AS_AltDP=50;AS_QD=17.27;BaseQRankSum=-1.709;DP=84;ExcessHet=0.0000;FS=1.902;MQ=60.00;MQRankSum=0;QD=17.27;ReadPosRankSum=1.201;SOR=0.454;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:759,0:0,0,11,12 0/1:31,27:58:99:640,0,827:19,12,16,11 +chrX 4889689 . G C 1119 . AC=2;AF=0.667;AN=3;AS_AltDP=42;AS_QD=14.36;BaseQRankSum=-1.143;DP=84;ExcessHet=0.0000;FS=2.936;MQ=60.00;MQRankSum=0;QD=14.36;ReadPosRankSum=1.029;SOR=0.436;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:774,0:0,0,10,15 0/1:38,17:55:99:375,0,1093:16,22,11,6 +chrX 4890372 . C T 770 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=15.69;BaseQRankSum=-0.459;DP=79;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=15.69;ReadPosRankSum=2.798;SOR=0.760;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:99:28:0,569 0/1:22,29:51:99:.:800,0,576:11,11,14,15 +chrX 4891366 . T G 249 . AC=1;AF=0.333;AN=3;AS_AltDP=9;AS_QD=6.64;BaseQRankSum=1.115;DP=71;ExcessHet=0.0000;FS=9.249;MQ=54.70;MQRankSum=-5.125;QD=6.64;ReadPosRankSum=-0.445;SOR=2.732;VarDP=42 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:28:99:28:.:.:0,569 0|1:33,9:42:99:.:0|1:4891366_T_G:279,0,1359:4891366:18,15,8,1 +chrX 4891373 . A G 246 . AC=1;AF=0.333;AN=3;AS_AltDP=9;AS_QD=6.42;BaseQRankSum=1.097;DP=72;ExcessHet=0.0000;FS=11.870;MQ=54.82;MQRankSum=-5.175;QD=6.42;ReadPosRankSum=0.164;SOR=2.846;VarDP=43 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:28:99:28:.:.:0,569 0|1:34,9:43:99:.:0|1:4891366_T_G:276,0,1401:4891366:18,16,8,1 +chrX 4891377 . A G 243 . AC=1;AF=0.333;AN=3;AS_AltDP=9;AS_QD=6.20;BaseQRankSum=1.096;DP=73;ExcessHet=0.0000;FS=9.154;MQ=54.94;MQRankSum=-5.225;QD=6.20;ReadPosRankSum=0.433;SOR=2.749;VarDP=44 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:28:99:28:.:.:0,569 0|1:35,9:44:99:.:0|1:4891366_T_G:273,0,1431:4891366:19,16,8,1 +chrX 4891508 . C CA 1725.97 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=22.63;BaseQRankSum=0.09;DP=83;ExcessHet=0.0000;FS=0.000;MQ=56.24;MQRankSum=-3.483;QD=22.63;ReadPosRankSum=-0.325;SOR=0.675;VarDP=78 GT:AD:DP:GQ:PL:SB 1:0,34:34:99:1271,0:0,0,19,15 0/1:27,17:44:99:494,0,879:15,12,9,8 +chrX 4891947 . C G 1811 . AC=2;AF=0.667;AN=3;AS_AltDP=44;AS_QD=28.32;BaseQRankSum=-1.322;DP=67;ExcessHet=0.0000;FS=3.745;MQ=45.04;MQRankSum=-5.108;QD=28.32;ReadPosRankSum=-0.489;SOR=1.182;VarDP=65 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,20:20:99:.:.:896,0:.:0,0,9,11 0|1:21,24:45:99:0|1:4891947_C_G:945,0,768:4891947:10,11,18,6 +chrX 4891954 . T C 1912 . AC=2;AF=0.667;AN=3;AS_AltDP=47;AS_QD=29.42;BaseQRankSum=0.659;DP=67;ExcessHet=0.0000;FS=5.637;MQ=44.72;MQRankSum=-4.608;QD=29.42;ReadPosRankSum=-1.063;SOR=1.333;VarDP=66 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,21:21:99:.:.:931,0:.:0,0,10,11 0|1:19,26:45:99:0|1:4891947_C_G:1011,0,699:4891947:9,10,20,6 +chrX 4892218 . T C 1828 . AC=2;AF=0.667;AN=3;AS_AltDP=66;AS_QD=19.35;BaseQRankSum=-0.341;DP=104;ExcessHet=0.0000;FS=0.822;MQ=55.61;MQRankSum=-4.694;QD=19.35;ReadPosRankSum=1.116;SOR=0.576;VarDP=96 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:798,0:0,0,13,13 0/1:30,40:70:99:1060,0,773:14,16,20,20 +chrX 4893163 . G A 1329 . AC=2;AF=0.667;AN=3;AS_AltDP=45;AS_QD=21.92;BaseQRankSum=0.837;DP=64;ExcessHet=0.0000;FS=5.845;MQ=45.54;MQRankSum=-1.901;QD=21.92;ReadPosRankSum=-0.781;SOR=0.490;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,22:22:99:739,0:0,0,10,12 0/1:17,23:40:99:620,0,381:11,6,11,12 +chrX 4893764 . G A 620 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=11.82;BaseQRankSum=0.74;DP=85;ExcessHet=0.0000;FS=5.637;MQ=44.37;MQRankSum=-1.321;QD=11.82;ReadPosRankSum=0.693;SOR=1.484;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:99:28:0,471 0/1:30,25:55:99:.:650,0,778:17,13,18,7 +chrX 4893829 . G A 1081 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=18.83;BaseQRankSum=2.196;DP=87;ExcessHet=0.0000;FS=5.303;MQ=47.16;MQRankSum=-3.162;QD=18.83;ReadPosRankSum=-2.209;SOR=0.264;VarDP=59 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:28:99:28:.:.:0,471 0|1:29,30:59:99:.:0|1:4893829_G_A:1111,0,1107:4893829:19,10,15,15 +chrX 4893850 . C T,A 1023 . AC=1,0;AF=0.333,0.00;AN=3;AS_AltDP=28,3;AS_QD=18.47,1.09;BaseQRankSum=1.862;DP=88;ExcessHet=0.0000;FS=0.986;MQ=48.02;MQRankSum=-4.029;QD=17.55;ReadPosRankSum=-0.645;SOR=0.551;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:99:28:0,471,471 0/1:29,28,3:60:99:.:1053,0,1134,1018,1067,2228:18,11,18,13 +chrX 4893851 . C G 1014 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=17.40;BaseQRankSum=1.077;DP=88;ExcessHet=0.0000;FS=3.656;MQ=48.02;MQRankSum=-2.751;QD=17.40;ReadPosRankSum=-1.452;SOR=0.328;VarDP=60 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:28:99:28:.:.:0,471 0|1:32,28:60:99:.:0|1:4893829_G_A:1044,0,1260:4893829:21,11,15,13 +chrX 4894014 . A G 1280 . AC=2;AF=0.667;AN=3;AS_AltDP=46;AS_QD=17.47;BaseQRankSum=0.294;DP=80;ExcessHet=0.0000;FS=0.878;MQ=53.36;MQRankSum=2.445;QD=17.47;ReadPosRankSum=-0.095;SOR=0.588;VarDP=75 GT:AD:DP:GQ:PL:SB 1:1,23:24:99:684,0:0,1,13,10 0/1:28,23:51:99:626,0,749:13,15,9,14 +chrX 4894208 . T C 806 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=13.48;BaseQRankSum=-0.066;DP=87;ExcessHet=0.0000;FS=4.921;MQ=56.25;MQRankSum=-4.736;QD=13.48;ReadPosRankSum=-0.634;SOR=0.550;VarDP=62 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:23:99:23:0,536 0/1:30,32:62:99:.:836,0,771:12,18,17,15 +chrX 4894226 . A G 2062 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=24.61;BaseQRankSum=-1.038;DP=88;ExcessHet=0.0000;FS=11.230;MQ=53.97;MQRankSum=-5.911;QD=24.61;ReadPosRankSum=0.479;SOR=0.841;VarDP=85 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,24:24:99:.:.:1048,0:.:0,0,12,12 0|1:32,29:61:99:0|1:4894226_A_G:1044,0,1246:4894226:12,20,19,10 +chrX 4894236 . A G 2009 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=24.87;BaseQRankSum=-0.933;DP=84;ExcessHet=0.0000;FS=7.661;MQ=53.16;MQRankSum=-6.154;QD=24.87;ReadPosRankSum=0.228;SOR=0.753;VarDP=82 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,23:23:99:.:.:1023,0:.:0,0,11,12 0|1:31,28:59:99:0|1:4894226_A_G:1016,0,1217:4894226:12,19,18,10 +chrX 4894330 . C T 1243 . AC=2;AF=0.667;AN=3;AS_AltDP=42;AS_QD=17.44;BaseQRankSum=0.595;DP=77;ExcessHet=0.0000;FS=1.953;MQ=54.83;MQRankSum=-3.64;QD=17.44;ReadPosRankSum=-0.49;SOR=0.639;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:780,0:0,0,9,14 0/1:31,19:50:99:493,0,882:14,17,13,6 +chrX 4894619 . C T 1769 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=21.42;BaseQRankSum=-0.996;DP=86;ExcessHet=0.0000;FS=6.299;MQ=58.40;MQRankSum=0.812;QD=21.42;ReadPosRankSum=0.927;SOR=0.722;VarDP=84 GT:AD:DP:GQ:PL:SB 1:0,38:38:99:1296,0:0,0,18,20 0/1:25,21:46:99:503,0,677:15,10,8,13 +chrX 4894884 . T C 1615 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=19.58;BaseQRankSum=2.819;DP=85;ExcessHet=0.0000;FS=13.905;MQ=45.37;MQRankSum=-5.456;QD=19.58;ReadPosRankSum=-1.486;SOR=1.419;VarDP=84 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:1104,0:0,0,20,13 0/1:31,20:51:99:541,0,824:13,18,15,5 +chrX 4894958 . A T 1742 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=21.35;BaseQRankSum=-0.049;DP=83;ExcessHet=0.0000;FS=10.451;MQ=49.94;MQRankSum=-1.932;QD=21.35;ReadPosRankSum=-0.021;SOR=0.173;VarDP=83 GT:AD:DP:GQ:PL:SB 1:0,36:36:99:1163,0:0,0,18,18 0/1:24,23:47:99:609,0,653:6,18,9,14 +chrX 4895064 . A T 1735 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=23.53;BaseQRankSum=-0.787;DP=78;ExcessHet=0.0000;FS=13.201;MQ=58.79;MQRankSum=-1.928;QD=23.53;ReadPosRankSum=-0.587;SOR=1.332;VarDP=75 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:918,0:0,0,8,20 0/1:17,30:47:99:847,0,440:11,6,12,18 +chrX 4896241 . T C 1587 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=21.85;BaseQRankSum=-2.261;DP=76;ExcessHet=0.0000;FS=11.902;MQ=51.09;MQRankSum=-4.102;QD=21.85;ReadPosRankSum=0.36;SOR=0.407;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:853,0:0,0,14,14 0/1:18,28:46:99:764,0,487:13,5,12,16 +chrX 4896471 . T A 1463 . AC=2;AF=0.667;AN=3;AS_AltDP=50;AS_QD=21.33;BaseQRankSum=1.568;DP=71;ExcessHet=0.0000;FS=1.061;MQ=40.95;MQRankSum=-3.555;QD=21.33;ReadPosRankSum=-0.268;SOR=0.997;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:833,0:0,0,9,18 0/1:20,23:43:99:660,0,527:8,12,8,15 +chrX 4896635 . C T 1111 . AC=2;AF=0.667;AN=3;AS_AltDP=41;AS_QD=18.11;BaseQRankSum=-0.478;DP=64;ExcessHet=0.0000;FS=0.000;MQ=40.27;MQRankSum=-2.761;QD=18.11;ReadPosRankSum=0.816;SOR=0.685;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:726,0:0,0,15,8 0/1:22,18:40:99:415,0,532:13,9,9,9 +chrX 4896749 . G A 1532 . AC=2;AF=0.667;AN=3;AS_AltDP=39;AS_QD=22.97;BaseQRankSum=3.402;DP=70;ExcessHet=0.0000;FS=3.344;MQ=46.58;MQRankSum=-0.43;QD=22.97;ReadPosRankSum=0.09;SOR=1.055;VarDP=68 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,21:22:99:.:.:890,0:.:0,1,11,10 0|1:28,18:46:99:0|1:4896749_G_A:672,0,1089:4896749:14,14,12,6 +chrX 4896751 . C A 1532 . AC=2;AF=0.667;AN=3;AS_AltDP=39;AS_QD=22.97;BaseQRankSum=2.291;DP=70;ExcessHet=0.0000;FS=3.344;MQ=46.85;MQRankSum=-0.43;QD=22.97;ReadPosRankSum=0.203;SOR=1.055;VarDP=68 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,21:22:99:.:.:890,0:.:0,1,11,10 0|1:28,18:46:99:0|1:4896749_G_A:672,0,1089:4896749:14,14,12,6 +chrX 4896764 . A G 1507 . AC=2;AF=0.667;AN=3;AS_AltDP=39;AS_QD=22.94;BaseQRankSum=2.147;DP=70;ExcessHet=0.0000;FS=8.373;MQ=47.07;MQRankSum=-0.311;QD=22.94;ReadPosRankSum=-0.011;SOR=1.107;VarDP=67 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,20:21:99:.:.:820,0:.:0,1,11,9 0|1:27,19:46:99:0|1:4896764_A_G:717,0,1070:4896764:12,15,13,6 +chrX 4896767 . C T 1541 . AC=2;AF=0.667;AN=3;AS_AltDP=40;AS_QD=23.10;BaseQRankSum=4.588;DP=68;ExcessHet=0.0000;FS=8.524;MQ=47.53;MQRankSum=-0.191;QD=23.10;ReadPosRankSum=-0.067;SOR=1.171;VarDP=68 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,21:22:99:.:.:854,0:.:0,1,12,9 0|1:27,19:46:99:0|1:4896764_A_G:717,0,1070:4896764:12,15,13,6 +chrX 4896774 . G A 1529 . AC=2;AF=0.667;AN=3;AS_AltDP=39;AS_QD=22.93;BaseQRankSum=2.308;DP=69;ExcessHet=0.0000;FS=6.561;MQ=48.04;MQRankSum=-0.197;QD=22.93;ReadPosRankSum=0.257;SOR=1.138;VarDP=68 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:1,20:21:99:.:.:845,0:.:0,1,11,9 0|1:28,19:47:99:0|1:4896764_A_G:714,0,1077:4896764:13,15,13,6 +chrX 4896934 . A G 1992 . AC=2;AF=0.667;AN=3;AS_AltDP=67;AS_QD=22.22;BaseQRankSum=-0.544;DP=98;ExcessHet=0.0000;FS=0.000;MQ=49.66;MQRankSum=-3.9;QD=22.22;ReadPosRankSum=1.366;SOR=0.705;VarDP=91 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:1082,0:0,0,19,13 0/1:24,35:59:99:940,0,628:14,10,20,15 +chrX 4897126 . C T 1595 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=19.82;BaseQRankSum=-1.53;DP=84;ExcessHet=0.0000;FS=1.921;MQ=56.95;MQRankSum=-2.983;QD=19.82;ReadPosRankSum=1.402;SOR=0.830;VarDP=82 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:933,0:0,0,14,14 0/1:27,27:54:99:692,0,776:14,13,11,16 +chrX 4897403 . G C 1591 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=21.91;BaseQRankSum=1.058;DP=78;ExcessHet=0.0000;FS=2.232;MQ=56.23;MQRankSum=-1.973;QD=21.91;ReadPosRankSum=0.971;SOR=0.461;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:924,0:0,0,13,15 0/1:21,25:46:99:697,0,542:6,15,6,19 +chrX 4897682 . A G 483 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=11.93;BaseQRankSum=1.485;DP=70;ExcessHet=0.0000;FS=6.374;MQ=48.02;MQRankSum=0.804;QD=11.93;ReadPosRankSum=0.232;SOR=0.399;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:26:99:26:0,661 0/1:24,19:43:99:.:513,0,617:16,8,9,10 +chrX 4897765 . T G 1692 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=22.36;BaseQRankSum=-0.063;DP=78;ExcessHet=0.0000;FS=9.283;MQ=56.57;MQRankSum=-1.948;QD=22.36;ReadPosRankSum=-0.02;SOR=0.850;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:893,0:0,0,15,12 0/1:19,31:50:99:829,0,481:7,12,19,12 +chrX 4898802 . A G 1230 . AC=2;AF=0.667;AN=3;AS_AltDP=41;AS_QD=18.26;BaseQRankSum=0.099;DP=73;ExcessHet=0.0000;FS=0.916;MQ=60.00;MQRankSum=0;QD=18.26;ReadPosRankSum=2.291;SOR=0.573;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,21:21:99:729,0:0,0,13,8 0/1:28,20:48:99:531,0,799:16,12,9,11 +chrX 4899129 . T C 759 . AC=1;AF=0.333;AN=3;AS_AltDP=32;AS_QD=12.93;BaseQRankSum=-0.981;DP=95;ExcessHet=0.0000;FS=0.975;MQ=60.00;MQRankSum=0;QD=12.93;ReadPosRankSum=-0.939;SOR=0.518;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,690 0/1:29,32:61:99:.:789,0,754:13,16,16,16 +chrX 4899392 . C A 1335 . AC=2;AF=0.667;AN=3;AS_AltDP=45;AS_QD=18.96;BaseQRankSum=1.621;DP=79;ExcessHet=0.0000;FS=0.914;MQ=60.00;MQRankSum=0;QD=18.96;ReadPosRankSum=0.981;SOR=0.848;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:938,0:0,0,12,17 0/1:27,16:43:99:427,0,748:13,14,8,8 +chrX 4899576 . T C 1300 . AC=2;AF=0.667;AN=3;AS_AltDP=45;AS_QD=16.22;BaseQRankSum=0.32;DP=83;ExcessHet=0.0000;FS=2.906;MQ=60.00;MQRankSum=0;QD=16.22;ReadPosRankSum=0.502;SOR=0.522;VarDP=82 GT:AD:DP:GQ:PL:SB 1:0,21:21:99:719,0:0,0,11,10 0/1:37,24:61:99:611,0,1003:21,16,11,13 +chrX 4902042 . CA C 238.97 . AC=2;AF=0.667;AN=3;AS_AltDP=22;AS_QD=6.32;BaseQRankSum=0.423;DP=77;ExcessHet=0.0000;FS=9.359;MQ=59.75;MQRankSum=0;QD=6.32;ReadPosRankSum=1.445;SOR=0.105;VarDP=44 GT:AD:DP:GQ:PL:SB 1:4,12:16:99:158,0:1,3,4,8 0/1:18,10:28:99:120,0,264:4,14,7,3 +chrX 4903288 . A G 1628 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=23.03;BaseQRankSum=-1.292;DP=73;ExcessHet=0.0000;FS=1.115;MQ=60.00;MQRankSum=0;QD=23.03;ReadPosRankSum=0.649;SOR=1.033;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:1017,0:0,0,21,10 0/1:17,24:41:99:641,0,447:10,7,15,9 +chrX 4903305 . A G 1593 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=23.87;BaseQRankSum=0.595;DP=72;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=23.87;ReadPosRankSum=-0.043;SOR=0.727;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:983,0:0,0,20,9 0/1:15,24:39:99:640,0,365:10,5,15,9 +chrX 4904666 . C G 1725 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=21.40;BaseQRankSum=-1.604;DP=88;ExcessHet=0.0000;FS=3.395;MQ=59.93;MQRankSum=0;QD=21.40;ReadPosRankSum=-0.909;SOR=1.160;VarDP=82 GT:AD:DP:GQ:PL:SB 1:0,19:19:99:615,0:0,0,11,8 0/1:22,41:63:99:1140,0,564:11,11,25,16 +chrX 4906501 . C T 609 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=11.62;BaseQRankSum=-0.698;DP=88;ExcessHet=0.0000;FS=3.728;MQ=60.00;MQRankSum=0;QD=11.62;ReadPosRankSum=-0.355;SOR=0.487;VarDP=55 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,522 0/1:30,25:55:99:.:639,0,837:18,12,12,13 +chrX 4907452 . C A 1651 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=22.12;BaseQRankSum=-2.296;DP=77;ExcessHet=0.0000;FS=2.158;MQ=60.00;MQRankSum=0;QD=22.12;ReadPosRankSum=-0.037;SOR=0.802;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:1067,0:0,0,15,18 0/1:19,24:43:99:614,0,532:10,9,11,13 +chrX 4908640 . C CA,CAAA 517.97 . AC=2,0;AF=0.667,0.00;AN=3;AS_AltDP=26,3;AS_QD=16.88,9.30;BaseQRankSum=0.103;DP=76;ExcessHet=0.0000;FS=3.960;MQ=59.42;MQRankSum=0.057;QD=15.47;ReadPosRankSum=-0.47;SOR=0.545;VarDP=36 GT:AD:DP:GQ:PL:SB 1:0,10,3:13:99:328,0,235:0,0,8,5 0/1:7,16,0:23:74:229,0,74,250,121,370:5,2,5,11 +chrX 4908831 . G A 954 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=32.80;DP=91;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.80;SOR=1.143;VarDP=30 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,30:30:99:.:984,0:0,0,12,18 0/0:.:60:41:60:0,41,1285 +chrX 4910329 . T G 1945 . AC=2;AF=0.667;AN=3;AS_AltDP=66;AS_QD=20.57;BaseQRankSum=1.743;DP=102;ExcessHet=0.0000;FS=2.919;MQ=60.00;MQRankSum=0;QD=20.57;ReadPosRankSum=-1.646;SOR=0.423;VarDP=96 GT:AD:DP:GQ:PL:SB 1:0,42:42:99:1324,0:0,0,20,22 0/1:30,24:54:99:651,0,784:18,12,14,10 +chrX 4912012 . C CA 824.97 . AC=2;AF=0.667;AN=3;AS_AltDP=40;AS_QD=17.28;BaseQRankSum=-1.081;DP=66;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=17.28;ReadPosRankSum=-0.571;SOR=0.744;VarDP=50 GT:AD:DP:GQ:PL:SB 1:0,19:19:99:450,0:0,0,10,9 0/1:10,21:31:99:414,0,154:4,6,6,15 +chrX 4913205 . CT C 752.97 . AC=2;AF=0.667;AN=3;AS_AltDP=36;AS_QD=12.38;BaseQRankSum=1.019;DP=83;ExcessHet=0.0000;FS=11.868;MQ=59.93;MQRankSum=0;QD=12.38;ReadPosRankSum=0.918;SOR=2.179;VarDP=64 GT:AD:DP:GQ:PL:SB 1:0,21:21:99:540,0:0,0,6,15 0/1:28,15:43:99:252,0,570:14,14,3,12 +chrX 4913907 . A AAC 2353.97 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=28.83;BaseQRankSum=-0.276;DP=86;ExcessHet=0.0000;FS=3.147;MQ=60.00;MQRankSum=0;QD=28.83;ReadPosRankSum=-0.016;SOR=0.414;VarDP=83 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:1213,0:0,0,14,13 0/1:26,30:56:99:1180,0,1002:16,10,16,14 +chrX 4915783 . CA C 1025.97 . AC=2;AF=0.667;AN=3;AS_AltDP=46;AS_QD=14.39;BaseQRankSum=-0.194;DP=88;ExcessHet=0.0000;FS=3.354;MQ=60.00;MQRankSum=0;QD=14.39;ReadPosRankSum=-0.382;SOR=0.346;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:632,0:0,0,14,10 0/1:28,22:50:99:433,0,589:19,9,12,10 +chrX 4919089 . A C 1867 . AC=2;AF=0.667;AN=3;AS_AltDP=66;AS_QD=19.56;BaseQRankSum=-0.468;DP=98;ExcessHet=0.0000;FS=10.886;MQ=60.00;MQRankSum=0;QD=19.56;ReadPosRankSum=0.649;SOR=0.193;VarDP=97 GT:AD:DP:GQ:PL:SB 1:1,40:41:99:1247,0:0,1,19,21 0/1:30,26:56:99:650,0,825:9,21,13,13 +chrX 4920302 . C G 520 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=12.79;BaseQRankSum=-0.737;DP=73;ExcessHet=0.0000;FS=14.730;MQ=60.00;MQRankSum=0;QD=12.79;ReadPosRankSum=-0.073;SOR=1.326;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,303 0/1:22,21:43:99:.:550,0,591:15,7,7,14 +chrX 4924150 . G A 771 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=14.83;BaseQRankSum=0.61;DP=87;ExcessHet=0.0000;FS=7.653;MQ=60.00;MQRankSum=0;QD=14.83;ReadPosRankSum=-1.119;SOR=1.092;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,303 0/1:25,29:54:99:.:801,0,652:15,10,11,18 +chrX 4925361 . A T,AT 244 . AC=0,1;AF=0.00,0.333;AN=3;AS_AltDP=2,16;AS_QD=0.00,8.06;BaseQRankSum=-1.494;DP=81;ExcessHet=0.0000;FS=4.982;MQ=60.00;MQRankSum=0;QD=7.61;ReadPosRankSum=1.519;SOR=0.991;VarDP=36 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,303,303 0/2:18,2,16:36:99:.:274,367,1359,0,414,380:7,11,11,7 +chrX 4928703 . G GAC 1512.97 . AC=3;AF=1.00;AN=3;AS_AltDP=48;AS_QD=31.67;BaseQRankSum=-0.48;DP=59;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=31.67;ReadPosRankSum=0.52;SOR=0.446;VarDP=49 GT:AD:DP:GQ:PL:SB 1:0,19:19:99:633,0:0,0,7,12 1/1:1,29:30:56:919,56,0:0,1,12,17 +chrX 4929627 . CATATATATATATATAT C 370.97 . AC=1;AF=0.333;AN=3;AS_AltDP=11;AS_QD=27.33;BaseQRankSum=-0.674;DP=50;ExcessHet=0.0000;FS=5.497;MQ=59.66;MQRankSum=0.993;QD=27.33;ReadPosRankSum=0.254;SOR=1.033;VarDP=15 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:27:45:27:.:.:0,45 0|1:4,11:15:99:.:0|1:4929627_CATATATATATATATAT_C:410,0,103:4929627:3,1,4,7 +chrX 4929672 . A G 440 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=26.11;BaseQRankSum=0.456;DP=45;ExcessHet=0.0000;FS=2.112;MQ=59.57;MQRankSum=0.902;QD=26.11;ReadPosRankSum=1.233;SOR=0.307;VarDP=18 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:27:45:27:.:.:0,45 0|1:5,13:18:99:.:0|1:4929627_CATATATATATATATAT_C:470,0,114:4929627:1,4,5,8 +chrX 4930149 . A G 964 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=32.15;DP=45;ExcessHet=0.0000;FS=0.000;MQ=58.99;QD=43.22;SOR=1.179;VarDP=23 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,23:23:99:.:994,0:0,0,14,9 0/0:.:25:28:21:0,28,620 +chrX 4930153 . C T 1777 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=25.81;BaseQRankSum=2.123;DP=71;ExcessHet=0.0000;FS=1.021;MQ=59.55;MQRankSum=-0.795;QD=25.81;ReadPosRankSum=1.216;SOR=0.561;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:1028,0:0,0,15,9 0/1:19,27:46:99:779,0,462:12,7,15,12 +chrX 4930356 . CAAAAAAA C 798.97 . AC=2;AF=0.667;AN=3;AS_AltDP=23;AS_QD=17.46;BaseQRankSum=0.638;DP=81;ExcessHet=0.0000;FS=39.382;MQ=58.54;MQRankSum=0.967;QD=17.46;ReadPosRankSum=0.35;SOR=2.313;VarDP=48 GT:AD:DP:GQ:PL:SB 1:3,6:9:99:209,0:1,2,5,1 0/1:22,17:39:99:629,0,720:4,18,13,4 +chrX 4932475 . G A 822 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=19.36;BaseQRankSum=0.057;DP=76;ExcessHet=0.0000;FS=6.930;MQ=60.00;MQRankSum=0;QD=19.36;ReadPosRankSum=0.285;SOR=0.795;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,501 0/1:15,29:44:99:.:852,0,364:5,10,17,12 +chrX 4933015 . T C 654 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=34.20;DP=68;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=34.20;SOR=1.127;VarDP=20 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,20:20:99:.:684,0:0,0,8,12 0/0:.:46:70:46:0,70,1092 +chrX 4933861 . T C 1677 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=19.40;BaseQRankSum=0.689;DP=92;ExcessHet=0.0000;FS=5.825;MQ=60.00;MQRankSum=0;QD=19.40;ReadPosRankSum=-0.203;SOR=1.108;VarDP=88 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:1083,0:0,0,14,19 0/1:30,25:55:99:624,0,773:16,14,9,16 +chrX 4934424 . G A 2546 . AC=3;AF=1.00;AN=3;AS_AltDP=78;AS_QD=33.03;DP=84;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.03;SOR=0.798;VarDP=78 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:780,0:0,0,12,11 1/1:0,55:55:99:1796,165,0:0,0,25,30 +chrX 4934852 . T G 1536 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=20.34;BaseQRankSum=0.976;DP=81;ExcessHet=0.0000;FS=0.939;MQ=60.00;MQRankSum=0;QD=20.34;ReadPosRankSum=-1.738;SOR=0.885;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:972,0:0,0,20,11 0/1:24,22:46:99:594,0,636:13,11,11,11 +chrX 4935579 . T C 1403 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=20.18;BaseQRankSum=-2.531;DP=73;ExcessHet=0.0000;FS=2.211;MQ=60.00;MQRankSum=0;QD=20.18;ReadPosRankSum=-0.494;SOR=0.446;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:794,0:0,0,13,13 0/1:19,26:45:99:639,0,516:11,8,13,13 +chrX 4936464 . G C 1164 . AC=2;AF=0.667;AN=3;AS_AltDP=40;AS_QD=18.09;BaseQRankSum=0.58;DP=69;ExcessHet=0.0000;FS=2.093;MQ=60.00;MQRankSum=0;QD=18.09;ReadPosRankSum=0.268;SOR=1.022;VarDP=66 GT:AD:DP:GQ:PL:SB 1:0,19:19:99:661,0:0,0,7,12 0/1:26,21:47:99:533,0,677:13,13,10,11 +chrX 4939418 . G A 863 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=31.89;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.89;SOR=0.836;VarDP=28 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,28:28:99:.:893,0:0,0,15,13 0/0:.:55:80:55:0,80,1093 +chrX 4941051 . G GA 529.97 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=25.86;DP=83;ExcessHet=0.0000;FS=0.000;MQ=59.83;QD=25.86;SOR=1.085;VarDP=22 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,22:22:99:.:569,0:0,0,13,9 0/0:.:55:80:55:0,80,1093 +chrX 4942156 . TGATAGATAGATAGATAGATAGATA TGATAGATAGATAGATA,T,TGATAGATAGATA 2226.97 . AC=1,1,1;AF=0.333,0.333,0.333;AN=3;AS_AltDP=19,19,16;AS_QD=36.87,30.07,28.74;DP=79;ExcessHet=0.0000;FS=0.000;MQ=59.83;QD=41.96;SOR=1.981;VarDP=54 GT:AD:DP:GQ:PL:SB 1:0,19,0,0:19:99:836,0,836,836:0,0,12,7 2/3:0,0,19,16:35:99:1430,1447,1552,674,797,844,756,773,0,706:0,0,27,8 +chrX 4942214 . CAGATAGATAGAT CAGATAGAT,C 2068.97 . AC=2,1;AF=0.667,0.333;AN=3;AS_AltDP=30,21;AS_QD=32.24,28.04;DP=85;ExcessHet=0.0000;FS=0.000;MQ=59.85;QD=41.33;SOR=0.813;VarDP=51 GT:AD:DP:GQ:PL:SB 1:0,15,0:15:99:665,0,665:0,0,10,5 1/2:0,15,21:36:99:1443,849,803,600,0,719:0,0,17,19 +chrX 4942590 . C CA 1485.97 . AC=2;AF=0.667;AN=3;AS_AltDP=46;AS_QD=18.60;BaseQRankSum=1.977;DP=87;ExcessHet=0.0000;FS=9.005;MQ=60.00;MQRankSum=0;QD=18.60;ReadPosRankSum=0.792;SOR=0.732;VarDP=82 GT:AD:DP:GQ:PL:SB 1:0,19:19:99:705,0:0,0,10,9 0/1:36,27:63:99:820,0,1157:22,14,10,17 +chrX 4943764 . G A 1130 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=32.22;DP=89;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.22;SOR=0.693;VarDP=36 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,36:36:99:.:1160,0:0,0,18,18 0/0:.:53:78:53:0,78,1246 +chrX 4943902 . TA T 923.97 . AC=2;AF=0.667;AN=3;AS_AltDP=42;AS_QD=13.56;BaseQRankSum=0.116;DP=81;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.56;ReadPosRankSum=-1.102;SOR=0.681;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,21:21:99:556,0:0,0,10,11 0/1:29,21:50:99:407,0,610:16,13,13,8 +chrX 4944580 . G A 960 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=18.68;BaseQRankSum=0.037;DP=79;ExcessHet=0.0000;FS=2.583;MQ=60.00;MQRankSum=0;QD=18.68;ReadPosRankSum=2.287;SOR=0.350;VarDP=53 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:25:99:25:.:.:0,546 0|1:26,27:53:99:.:0|1:4944580_G_A:990,0,964:4944580:10,16,10,10 +chrX 4944594 . CA C 1251.97 . AC=2;AF=0.667;AN=3;AS_AltDP=38;AS_QD=18.99;BaseQRankSum=-1.693;DP=91;ExcessHet=0.0000;FS=3.335;MQ=60.00;MQRankSum=0;QD=18.99;ReadPosRankSum=1.736;SOR=0.959;VarDP=68 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,18:18:99:.:.:585,0:.:0,0,6,12 0|1:30,20:50:99:0|1:4944580_G_A:706,0,1097:4944580:16,14,10,10 +chrX 4945625 . T C 768 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=30.69;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.69;SOR=1.697;VarDP=26 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,26:26:99:.:798,0:0,0,8,18 0/0:.:56:73:56:0,73,1110 +chrX 4946811 . A G 1177 . AC=2;AF=0.667;AN=3;AS_AltDP=41;AS_QD=19.79;BaseQRankSum=0.018;DP=63;ExcessHet=0.0000;FS=1.063;MQ=60.00;MQRankSum=0;QD=19.79;ReadPosRankSum=1.953;SOR=0.965;VarDP=61 GT:AD:DP:GQ:PL:SB 1:0,19:19:99:638,0:0,0,9,10 0/1:20,22:42:99:569,0,529:9,11,7,15 +chrX 4947267 . T A 754 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=32.67;DP=80;ExcessHet=0.0000;FS=0.000;MQ=59.27;QD=32.67;SOR=1.519;VarDP=24 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,24:24:99:.:784,0:0,0,8,16 0/0:.:56:72:56:0,72,1232 +chrX 4947777 . A G 1781 . AC=2;AF=0.667;AN=3;AS_AltDP=61;AS_QD=22.36;BaseQRankSum=-2.054;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=22.36;ReadPosRankSum=-0.058;SOR=0.670;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:962,0:0,0,13,17 0/1:20,31:51:99:849,0,542:9,11,15,16 +chrX 4948767 . A G 928 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=33.03;DP=78;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.03;SOR=0.906;VarDP=29 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,29:29:99:.:958,0:0,0,13,16 0/0:.:49:90:49:0,90,1171 +chrX 4949065 . G A 1434 . AC=2;AF=0.667;AN=3;AS_AltDP=49;AS_QD=19.78;BaseQRankSum=1.599;DP=78;ExcessHet=0.0000;FS=0.924;MQ=60.00;MQRankSum=0;QD=19.78;ReadPosRankSum=-2.009;SOR=0.836;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:764,0:0,0,11,13 0/1:25,25:50:99:700,0,628:11,14,9,16 +chrX 4949722 . T C 714 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=24.80;BaseQRankSum=1.127;DP=79;ExcessHet=0.0000;FS=6.842;MQ=60.00;MQRankSum=0;QD=24.80;ReadPosRankSum=-1.279;SOR=1.993;VarDP=30 GT:AD:DP:GQ:MIN_DP:PL:SB 1:3,27:30:99:.:744,0:2,1,7,20 0/0:.:49:71:49:0,71,948 +chrX 4950850 . AT A 136.97 . AC=1;AF=0.333;AN=3;AS_AltDP=12;AS_QD=11.00;BaseQRankSum=0.82;DP=66;ExcessHet=0.0000;FS=2.447;MQ=59.26;MQRankSum=1.876;QD=11.00;ReadPosRankSum=-1.215;SOR=0.707;VarDP=16 GT:AD:DP:GQ:MIN_DP:PL:SB 1:4,12:16:99:.:176,0:3,1,5,7 0/0:.:37:13:37:0,13,322 +chrX 4952112 . A G 2552 . AC=3;AF=1.00;AN=3;AS_AltDP=86;AS_QD=30.02;DP=88;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.02;SOR=0.788;VarDP=86 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:863,0:0,0,15,12 1/1:0,59:59:99:1719,174,0:0,0,30,29 +chrX 4952998 . CAAAAAAAAAA C,CAAAAAAAAA 489.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=11,7;AS_QD=21.33,4.76;BaseQRankSum=-0.381;DP=68;ExcessHet=0.0000;FS=23.542;MQ=58.76;MQRankSum=2.089;QD=18.89;ReadPosRankSum=-1.306;SOR=1.702;VarDP=28 GT:AD:DP:GQ:PL:SB 1:3,11,0:14:99:448,0,486:1,2,7,4 0/2:7,0,7:14:81:81,103,213,0,111,90:0,7,6,1 +chrX 4953532 . G A 1025 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=15.75;BaseQRankSum=1.131;DP=100;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=15.75;ReadPosRankSum=-0.911;SOR=0.670;VarDP=67 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,526 0/1:29,38:67:99:.:1055,0,722:17,12,22,16 +chrX 4956072 . C A 597 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=13.63;BaseQRankSum=2.263;DP=80;ExcessHet=0.0000;FS=1.097;MQ=60.00;MQRankSum=0;QD=13.63;ReadPosRankSum=0.748;SOR=0.874;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,526 0/1:24,22:46:99:.:627,0,646:12,12,12,10 +chrX 4956845 . G C 3064 . AC=3;AF=1.00;AN=3;AS_AltDP=87;AS_QD=27.26;DP=91;ExcessHet=0.0000;FS=0.000;MQ=59.83;QD=35.56;SOR=0.763;VarDP=87 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,35:35:99:.:.:1109,0:.:0,0,19,16 1|1:0,52:52:99:0|1:4956845_G_C:1985,156,0:4956845:0,0,26,26 +chrX 4956847 . C A 680 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=13.92;BaseQRankSum=0.498;DP=99;ExcessHet=0.0000;FS=3.918;MQ=59.71;MQRankSum=0;QD=13.92;ReadPosRankSum=1.131;SOR=0.883;VarDP=51 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:46:99:46:.:.:0,1330 0|1:25,26:51:99:.:0|1:4956845_G_C:710,0,650:4956845:14,11,11,15 +chrX 4957016 . C T 3010 . AC=3;AF=1.00;AN=3;AS_AltDP=92;AS_QD=33.04;DP=95;ExcessHet=0.0000;FS=0.000;MQ=59.93;QD=33.04;SOR=0.693;VarDP=92 GT:AD:DP:GQ:PL:SB 1:0,42:42:99:1377,0:0,0,18,24 1/1:0,50:50:99:1663,150,0:0,0,28,22 +chrX 4958212 . T C 389 . AC=1;AF=0.333;AN=3;AS_AltDP=18;AS_QD=7.76;BaseQRankSum=-0.614;DP=88;ExcessHet=0.0000;FS=4.029;MQ=60.00;MQRankSum=0;QD=7.76;ReadPosRankSum=-1.037;SOR=1.118;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:33:99:33:0,486 0/1:36,18:54:99:.:419,0,1047:17,19,11,7 +chrX 4958393 . CA C 758.97 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=17.35;BaseQRankSum=-1.663;DP=81;ExcessHet=0.0000;FS=6.133;MQ=60.00;MQRankSum=0;QD=17.35;ReadPosRankSum=0.143;SOR=0.368;VarDP=46 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:33:99:33:0,486 0/1:21,25:46:99:.:798,0,647:14,7,12,13 +chrX 4958598 . A T 534 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=13.43;BaseQRankSum=-0.39;DP=79;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.43;ReadPosRankSum=0.717;SOR=0.708;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:33:99:33:0,486 0/1:21,21:42:99:.:564,0,574:11,10,10,11 +chrX 4958996 . G T 496 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=8.22;BaseQRankSum=0.507;DP=102;ExcessHet=0.0000;FS=0.997;MQ=60.00;MQRankSum=0;QD=8.22;ReadPosRankSum=-0.276;SOR=0.527;VarDP=64 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:33:99:33:0,486 0/1:42,22:64:99:.:526,0,1173:19,23,11,11 +chrX 4959278 . A T 857 . AC=1;AF=0.333;AN=3;AS_AltDP=29;AS_QD=30.59;DP=81;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=30.59;SOR=1.071;VarDP=29 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,29:29:99:.:887,0:0,0,12,17 0/0:.:52:58:52:0,58,929 +chrX 4960637 . CA C,CAAA,CAAAA 474.97 . AC=2,0,1;AF=0.667,0.00,0.333;AN=3;AS_AltDP=26,3,9;AS_QD=13.25,0.00,12.64;BaseQRankSum=-1.393;DP=71;ExcessHet=0.0000;FS=3.021;MQ=59.38;MQRankSum=0;QD=12.85;ReadPosRankSum=-0.447;SOR=0.154;VarDP=40 GT:AD:DP:GQ:PL:SB 1:0,13,3,0:16:99:211,0,385,351:0,0,11,5 1/3:2,13,0,9:24:99:303,143,232,393,314,1110,164,0,486,472:2,0,10,12 +chrX 4961447 . T C 795 . AC=1;AF=0.333;AN=3;AS_AltDP=33;AS_QD=11.15;BaseQRankSum=-0.823;DP=107;ExcessHet=0.0000;FS=4.563;MQ=60.00;MQRankSum=0;QD=11.15;ReadPosRankSum=1.528;SOR=0.877;VarDP=74 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,610 0/1:41,33:74:99:.:825,0,1143:23,18,14,19 +chrX 4961960 . C A 936 . AC=1;AF=0.333;AN=3;AS_AltDP=25;AS_QD=19.71;BaseQRankSum=-1.37;DP=80;ExcessHet=0.0000;FS=13.327;MQ=60.00;MQRankSum=0;QD=19.71;ReadPosRankSum=0.94;SOR=1.154;VarDP=49 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:29:99:29:.:.:0,610 0|1:24,25:49:99:.:0|1:4961960_C_A:966,0,881:4961960:8,16,16,9 +chrX 4961976 . A C 1005 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=21.12;BaseQRankSum=-0.014;DP=79;ExcessHet=0.0000;FS=10.571;MQ=60.00;MQRankSum=0;QD=21.12;ReadPosRankSum=-0.342;SOR=1.111;VarDP=49 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:29:99:29:.:.:0,610 0|1:22,27:49:99:.:0|1:4961960_C_A:1035,0,801:4961960:8,14,17,10 +chrX 4962194 . CA C 553.97 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=28.24;DP=75;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=28.24;SOR=0.990;VarDP=21 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,21:21:99:.:593,0:0,0,9,12 0/0:.:50:71:50:0,71,1330 +chrX 4962623 . A C 1837 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=21.46;BaseQRankSum=0.41;DP=88;ExcessHet=0.0000;FS=0.903;MQ=60.00;MQRankSum=0;QD=21.46;ReadPosRankSum=-0.348;SOR=0.859;VarDP=87 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:1027,0:0,0,17,16 0/1:24,30:54:99:840,0,617:12,12,12,18 +chrX 4964492 . G GTT,GT,GTTTT 537.97 . AC=1,1,0;AF=0.333,0.333,0.00;AN=3;AS_AltDP=10,12,1;AS_QD=13.48,12.78,4.50;BaseQRankSum=-0.729;DP=59;ExcessHet=0.0000;FS=1.456;MQ=59.72;MQRankSum=0;QD=16.97;ReadPosRankSum=-0.667;SOR=0.377;VarDP=34 GT:AD:DP:GQ:PL:SB 1:0,10,0,0:10:99:283,0,283,283:0,0,7,3 0/2:11,0,12,1:24:99:294,309,664,0,230,153,240,653,203,775:4,7,4,9 +chrX 4964524 . G A 421 . AC=1;AF=0.333;AN=3;AS_AltDP=16;AS_QD=18.04;BaseQRankSum=-1.307;DP=51;ExcessHet=0.0000;FS=12.436;MQ=60.00;MQRankSum=0;QD=18.04;ReadPosRankSum=-2.607;SOR=0.024;VarDP=25 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:25:99:25:0,256 0/1:9,16:25:99:.:451,0,238:0,9,6,10 +chrX 4964648 . A G 694 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=16.84;BaseQRankSum=-1.2;DP=70;ExcessHet=0.0000;FS=1.217;MQ=60.00;MQRankSum=0;QD=16.84;ReadPosRankSum=-1.416;SOR=0.425;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:25:99:25:0,256 0/1:17,26:43:99:.:724,0,452:7,10,13,13 +chrX 4964805 . C T 714 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=32.35;DP=76;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.35;SOR=0.963;VarDP=23 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,23:23:99:.:744,0:0,0,13,10 0/0:.:51:59:51:0,59,1240 +chrX 4966047 . C CAAACA 803.97 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=25.08;DP=78;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=44.37;SOR=1.292;VarDP=19 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,19:19:99:.:843,0:0,0,12,7 0/0:.:51:59:51:0,59,1240 +chrX 4966977 . A T 500 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=9.14;BaseQRankSum=-2.85;DP=90;ExcessHet=0.0000;FS=5.483;MQ=60.00;MQRankSum=0;QD=9.14;ReadPosRankSum=0.843;SOR=1.040;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,710 0/1:35,23:58:99:.:530,0,1022:15,20,14,9 +chrX 4967153 . T TATAG 1505.97 . AC=2;AF=0.667;AN=3;AS_AltDP=38;AS_QD=27.11;BaseQRankSum=1.109;DP=84;ExcessHet=0.0000;FS=3.897;MQ=60.00;MQRankSum=0;QD=27.11;ReadPosRankSum=0.258;SOR=0.721;VarDP=57 GT:AD:DP:GQ:PL:SB 1:0,20:20:99:853,0:0,0,12,8 0/1:19,18:37:99:692,0,672:8,11,9,9 +chrX 4967412 . T A 761 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=17.58;BaseQRankSum=-0.546;DP=77;ExcessHet=0.0000;FS=8.862;MQ=60.00;MQRankSum=0;QD=17.58;ReadPosRankSum=0.433;SOR=0.952;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:29:99:29:0,516 0/1:17,28:45:99:.:791,0,443:6,11,17,11 +chrX 4968691 . A AT 3550.97 . AC=3;AF=1.00;AN=3;AS_AltDP=90;AS_QD=35.11;DP=95;ExcessHet=0.0000;FS=0.000;MQ=59.94;QD=39.89;SOR=0.693;VarDP=90 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:1105,0:0,0,16,12 1/1:0,62:62:99:2485,187,0:0,0,29,33 +chrX 4969003 . C T 600 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=16.58;BaseQRankSum=-0.285;DP=65;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=16.58;ReadPosRankSum=-0.71;SOR=0.813;VarDP=38 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:24:99:24:0,174 0/1:16,22:38:99:.:630,0,432:9,7,13,9 +chrX 4969074 . G A 452 . AC=1;AF=0.333;AN=3;AS_AltDP=17;AS_QD=13.39;BaseQRankSum=3.252;DP=64;ExcessHet=0.0000;FS=3.164;MQ=60.00;MQRankSum=0;QD=13.39;ReadPosRankSum=1.522;SOR=0.264;VarDP=36 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:24:99:24:0,174 0/1:19,17:36:99:.:482,0,458:14,5,10,7 +chrX 4969180 . CAA C 101.97 . AC=1;AF=0.333;AN=3;AS_AltDP=6;AS_QD=12.82;BaseQRankSum=0;DP=57;ExcessHet=0.0000;FS=18.195;MQ=58.06;MQRankSum=0;QD=12.82;ReadPosRankSum=-0.792;SOR=3.895;VarDP=11 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:24:99:24:0,174 0/1:5,6:11:69:.:141,0,69:1,4,6,0 +chrX 4969831 . C CT 1053.97 . AC=1;AF=0.333;AN=3;AS_AltDP=38;AS_QD=28.76;DP=101;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=28.76;SOR=0.798;VarDP=38 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,38:38:99:.:1093,0:0,0,18,20 0/0:.:60:49:60:0,49,900 +chrX 4970942 . G A 1876 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=20.28;BaseQRankSum=-0.962;DP=97;ExcessHet=0.0000;FS=20.658;MQ=60.00;MQRankSum=0;QD=20.28;ReadPosRankSum=-1.501;SOR=0.775;VarDP=94 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:1117,0:0,0,13,20 0/1:31,30:61:99:789,0,838:22,9,13,17 +chrX 4971207 . G A 640 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=16.75;BaseQRankSum=1.42;DP=74;ExcessHet=0.0000;FS=2.824;MQ=60.00;MQRankSum=0;QD=16.75;ReadPosRankSum=1.232;SOR=1.270;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,615 0/1:17,23:40:99:.:670,0,426:8,9,8,15 +chrX 4972023 . G A 691 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=13.35;BaseQRankSum=-0.042;DP=89;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.35;ReadPosRankSum=0.589;SOR=0.564;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,615 0/1:27,27:54:99:.:721,0,756:15,12,14,13 +chrX 4972812 . T TA,A 1182 . AC=2,0;AF=0.667,0.00;AN=3;AS_AltDP=44,3;AS_QD=18.36,2.24;BaseQRankSum=0.999;DP=84;ExcessHet=0.0000;FS=9.314;MQ=60.00;MQRankSum=0;QD=17.57;ReadPosRankSum=-0.418;SOR=1.246;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,23,0:23:99:666,0,666:0,0,6,17 0/1:22,21,3:46:99:546,0,515,490,525,1242:13,9,11,13 +chrX 4972916 . G T 933 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=14.16;BaseQRankSum=0.009;DP=90;ExcessHet=0.0000;FS=3.246;MQ=60.00;MQRankSum=0;QD=14.16;ReadPosRankSum=0.418;SOR=0.399;VarDP=68 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:22:99:22:0,491 0/1:32,36:68:99:.:963,0,819:13,19,18,18 +chrX 4973047 . C G 1311 . AC=2;AF=0.667;AN=3;AS_AltDP=46;AS_QD=18.12;BaseQRankSum=-0.604;DP=77;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=18.12;ReadPosRankSum=-1.0;SOR=0.764;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,18:18:99:596,0:0,0,12,6 0/1:28,28:56:99:745,0,750:16,12,15,13 +chrX 4973373 . T C 1286 . AC=2;AF=0.667;AN=3;AS_AltDP=43;AS_QD=17.78;BaseQRankSum=0;DP=81;ExcessHet=0.0000;FS=11.132;MQ=60.00;MQRankSum=0;QD=17.78;ReadPosRankSum=0.316;SOR=2.033;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:933,0:0,0,21,7 0/1:31,15:46:99:383,0,938:17,14,12,3 +chrX 4973592 . C T 1675 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=18.74;BaseQRankSum=0.66;DP=96;ExcessHet=0.0000;FS=8.829;MQ=60.00;MQRankSum=0;QD=18.74;ReadPosRankSum=0.953;SOR=0.634;VarDP=91 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:1058,0:0,0,17,14 0/1:35,25:60:99:647,0,956:13,22,14,11 +chrX 4973686 . C G 1610 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=20.25;BaseQRankSum=-0.952;DP=85;ExcessHet=0.0000;FS=3.215;MQ=60.00;MQRankSum=0;QD=20.25;ReadPosRankSum=-1.247;SOR=0.586;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:889,0:0,0,15,12 0/1:26,28:54:99:751,0,711:11,15,14,14 +chrX 4973884 . G A 587 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=12.10;BaseQRankSum=0.132;DP=87;ExcessHet=0.0000;FS=1.098;MQ=60.00;MQRankSum=0;QD=12.10;ReadPosRankSum=-0.368;SOR=0.990;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:32:99:32:0,755 0/1:27,24:51:99:.:617,0,711:12,15,9,15 +chrX 4974027 . T G 1676 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=19.39;BaseQRankSum=0;DP=90;ExcessHet=0.0000;FS=3.093;MQ=59.94;MQRankSum=0;QD=19.39;ReadPosRankSum=-0.127;SOR=0.392;VarDP=88 GT:AD:DP:GQ:PL:SB 1:0,40:40:99:1210,0:0,0,20,20 0/1:29,19:48:99:496,0,831:19,10,13,6 +chrX 4974170 . C G 1682 . AC=2;AF=0.667;AN=3;AS_AltDP=62;AS_QD=17.29;BaseQRankSum=-1.3;DP=101;ExcessHet=0.0000;FS=0.767;MQ=59.95;MQRankSum=0;QD=17.29;ReadPosRankSum=0.749;SOR=0.606;VarDP=99 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:858,0:0,0,13,14 0/1:37,35:72:99:854,0,960:17,20,17,18 +chrX 4974233 . A G 1716 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=17.12;BaseQRankSum=-2.42;DP=102;ExcessHet=0.0000;FS=0.760;MQ=60.00;MQRankSum=0;QD=17.12;ReadPosRankSum=0.603;SOR=0.584;VarDP=102 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:953,0:0,0,16,13 0/1:39,34:73:99:793,0,1097:21,18,16,18 +chrX 4974507 . T C 1718 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=19.86;BaseQRankSum=-2.12;DP=91;ExcessHet=0.0000;FS=1.843;MQ=60.00;MQRankSum=0;QD=19.86;ReadPosRankSum=0.263;SOR=0.557;VarDP=88 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:1027,0:0,0,15,16 0/1:29,28:57:99:721,0,813:16,13,14,14 +chrX 4974522 . GTCTTTA G 1083.97 . AC=1;AF=0.333;AN=3;AS_AltDP=30;AS_QD=19.36;BaseQRankSum=1.204;DP=90;ExcessHet=0.0000;FS=2.222;MQ=60.00;MQRankSum=0;QD=19.36;ReadPosRankSum=-1.391;SOR=0.883;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,720 0/1:28,30:58:99:.:1123,0,1085:13,15,17,13 +chrX 4975005 . G A 662 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=12.81;BaseQRankSum=-0.939;DP=87;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=12.81;ReadPosRankSum=0.779;SOR=0.693;VarDP=54 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,720 0/1:27,27:54:99:.:692,0,721:15,12,15,12 +chrX 4975565 . C G 1718 . AC=2;AF=0.667;AN=3;AS_AltDP=58;AS_QD=22.13;BaseQRankSum=-0.96;DP=80;ExcessHet=0.0000;FS=2.084;MQ=60.00;MQRankSum=0;QD=22.13;ReadPosRankSum=-0.083;SOR=0.481;VarDP=79 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:1028,0:0,0,17,14 0/1:21,27:48:99:720,0,554:13,8,15,12 +chrX 4976498 . A G 1452 . AC=2;AF=0.667;AN=3;AS_AltDP=50;AS_QD=19.00;BaseQRankSum=1.719;DP=80;ExcessHet=0.0000;FS=0.882;MQ=60.00;MQRankSum=0;QD=19.00;ReadPosRankSum=0.699;SOR=0.569;VarDP=78 GT:AD:DP:GQ:PL:SB 1:0,19:19:99:651,0:0,0,11,8 0/1:28,31:59:99:831,0,661:15,13,14,17 +chrX 4977167 . A G 1633 . AC=2;AF=0.667;AN=3;AS_AltDP=57;AS_QD=17.69;BaseQRankSum=0.714;DP=97;ExcessHet=0.0000;FS=0.798;MQ=60.00;MQRankSum=0;QD=17.69;ReadPosRankSum=0.568;SOR=0.820;VarDP=94 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:866,0:0,0,11,16 0/1:37,30:67:99:797,0,1009:16,21,12,18 +chrX 4977228 . C G 1745 . AC=2;AF=0.667;AN=3;AS_AltDP=60;AS_QD=21.13;BaseQRankSum=-0.78;DP=85;ExcessHet=0.0000;FS=1.989;MQ=60.00;MQRankSum=0;QD=21.13;ReadPosRankSum=-0.183;SOR=0.986;VarDP=84 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:1003,0:0,0,13,17 0/1:24,30:54:99:772,0,603:12,12,13,17 +chrX 4977425 . A G 1861 . AC=2;AF=0.667;AN=3;AS_AltDP=63;AS_QD=22.51;BaseQRankSum=0.088;DP=84;ExcessHet=0.0000;FS=8.878;MQ=60.00;MQRankSum=0;QD=22.51;ReadPosRankSum=-0.799;SOR=0.602;VarDP=84 GT:AD:DP:GQ:PL:SB 1:0,40:40:99:1279,0:0,0,23,17 0/1:21,23:44:99:612,0,558:7,14,12,11 +chrX 4977502 . T C 2754 . AC=3;AF=1.00;AN=3;AS_AltDP=87;AS_QD=32.00;DP=87;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.00;SOR=0.812;VarDP=87 GT:AD:DP:GQ:PL:SB 1:0,41:41:99:1239,0:0,0,21,20 1/1:0,46:46:99:1545,138,0:0,0,20,26 +chrX 4977942 . G T 1215 . AC=2;AF=0.667;AN=3;AS_AltDP=42;AS_QD=19.76;BaseQRankSum=-1.801;DP=67;ExcessHet=0.0000;FS=3.696;MQ=60.00;MQRankSum=0;QD=19.76;ReadPosRankSum=0.198;SOR=1.074;VarDP=63 GT:AD:DP:GQ:PL:SB 1:0,15:15:99:491,0:0,0,8,7 0/1:21,27:48:99:754,0,586:10,11,17,10 +chrX 4978398 . G T 1618 . AC=2;AF=0.667;AN=3;AS_AltDP=55;AS_QD=18.52;BaseQRankSum=1.763;DP=91;ExcessHet=0.0000;FS=1.747;MQ=60.00;MQRankSum=0;QD=18.52;ReadPosRankSum=-0.75;SOR=0.523;VarDP=89 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:1018,0:0,0,16,15 0/1:34,24:58:99:630,0,881:15,19,11,13 +chrX 4978442 . G C 705 . AC=1;AF=0.333;AN=3;AS_AltDP=28;AS_QD=11.67;BaseQRankSum=0.888;DP=89;ExcessHet=0.0000;FS=2.105;MQ=60.00;MQRankSum=0;QD=11.67;ReadPosRankSum=-0.63;SOR=0.707;VarDP=63 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:25:99:25:0,610 0/1:35,28:63:99:.:735,0,892:16,19,15,13 +chrX 4978501 . T G 1261 . AC=2;AF=0.667;AN=3;AS_AltDP=46;AS_QD=16.99;BaseQRankSum=-2.991;DP=78;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=16.99;ReadPosRankSum=1.274;SOR=0.693;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,20:20:99:655,0:0,0,9,11 0/1:30,26:56:99:636,0,875:17,13,17,9 +chrX 4978739 . G A 1816 . AC=2;AF=0.667;AN=3;AS_AltDP=59;AS_QD=21.22;BaseQRankSum=1.427;DP=91;ExcessHet=0.0000;FS=3.089;MQ=60.00;MQRankSum=0;QD=21.22;ReadPosRankSum=0.244;SOR=0.388;VarDP=87 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:1072,0:0,0,17,15 0/1:28,27:55:99:774,0,773:11,17,12,15 +chrX 4978871 . G C 2027 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=25.40;BaseQRankSum=2.085;DP=82;ExcessHet=0.0000;FS=3.070;MQ=60.00;MQRankSum=0;QD=25.40;ReadPosRankSum=0.313;SOR=0.422;VarDP=81 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,33:33:99:.:.:1422,0:.:0,0,18,15 0|1:30,18:48:99:0|1:4978871_G_C:635,0,1078:4978871:19,11,10,8 +chrX 4978893 . C T 2043 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=26.24;BaseQRankSum=0.502;DP=79;ExcessHet=0.0000;FS=4.644;MQ=60.00;MQRankSum=0;QD=26.24;ReadPosRankSum=-0.323;SOR=0.317;VarDP=79 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 1:0,32:32:99:.:.:1378,0:.:0,0,15,17 0|1:27,20:47:99:0|1:4978871_G_C:695,0,1002:4978871:17,10,11,9 +chrX 4979468 . T C 1626 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=21.79;BaseQRankSum=-1.235;DP=80;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=21.79;ReadPosRankSum=-0.634;SOR=0.586;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:874,0:0,0,13,13 0/1:20,30:50:99:782,0,505:11,9,16,14 +chrX 4979710 . G A 1609 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=23.08;BaseQRankSum=-0.85;DP=73;ExcessHet=0.0000;FS=1.030;MQ=60.00;MQRankSum=0;QD=23.08;ReadPosRankSum=-0.749;SOR=0.892;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:1043,0:0,0,16,14 0/1:18,23:41:99:596,0,462:9,9,13,10 +chrX 4979738 . A G 2382 . AC=3;AF=1.00;AN=3;AS_AltDP=72;AS_QD=33.50;DP=73;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.50;SOR=0.934;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:904,0:0,0,14,12 1/1:0,46:46:99:1508,138,0:0,0,26,20 +chrX 4979916 . G A 524 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=9.23;BaseQRankSum=-1.522;DP=85;ExcessHet=0.0000;FS=7.236;MQ=59.84;MQRankSum=0.823;QD=9.23;ReadPosRankSum=0.175;SOR=0.698;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:24:99:24:0,401 0/1:37,23:60:99:.:554,0,1076:23,14,10,13 +chrX 4980695 . A AT 2554.97 . AC=3;AF=1.00;AN=3;AS_AltDP=82;AS_QD=31.63;DP=85;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.63;SOR=1.292;VarDP=82 GT:AD:DP:GQ:PL:SB 1:0,19:19:99:600,0:0,0,11,8 1/1:0,63:63:99:1994,189,0:0,0,40,23 +chrX 4980793 . A G 653 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=11.38;BaseQRankSum=0.786;DP=89;ExcessHet=0.0000;FS=2.156;MQ=60.00;MQRankSum=0;QD=11.38;ReadPosRankSum=0.724;SOR=1.022;VarDP=60 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:28:99:28:0,561 0/1:34,26:60:99:.:683,0,918:17,17,11,15 +chrX 4980992 . A T 1583 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=19.67;BaseQRankSum=-0.095;DP=85;ExcessHet=0.0000;FS=3.169;MQ=60.00;MQRankSum=0;QD=19.67;ReadPosRankSum=0.197;SOR=1.124;VarDP=82 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:884,0:0,0,10,16 0/1:29,27:56:99:729,0,799:13,16,9,18 +chrX 4981226 . C T 1653 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=21.58;BaseQRankSum=0.151;DP=80;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=21.58;ReadPosRankSum=0.814;SOR=0.600;VarDP=78 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:1027,0:0,0,13,19 0/1:22,24:46:99:656,0,586:10,12,14,10 +chrX 4981319 . G A 1460 . AC=2;AF=0.667;AN=3;AS_AltDP=51;AS_QD=19.35;BaseQRankSum=-1.938;DP=82;ExcessHet=0.0000;FS=0.924;MQ=60.00;MQRankSum=0;QD=19.35;ReadPosRankSum=-0.509;SOR=0.538;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:874,0:0,0,9,17 0/1:26,25:51:99:616,0,711:10,16,13,12 +chrX 4981585 . T C 2138 . AC=3;AF=1.00;AN=3;AS_AltDP=65;AS_QD=33.35;DP=66;ExcessHet=0.0000;FS=0.000;MQ=59.93;QD=33.35;SOR=0.854;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,18:18:99:590,0:0,0,10,8 1/1:0,47:47:99:1578,141,0:0,0,25,22 +chrX 4981620 . A G 1231 . AC=2;AF=0.667;AN=3;AS_AltDP=41;AS_QD=20.34;BaseQRankSum=0.598;DP=62;ExcessHet=0.0000;FS=0.000;MQ=59.92;MQRankSum=0;QD=20.34;ReadPosRankSum=-0.929;SOR=0.676;VarDP=62 GT:AD:DP:GQ:PL:SB 1:0,18:18:99:615,0:0,0,11,7 0/1:21,23:44:99:646,0,568:13,8,14,9 +chrX 4981685 . A T 630 . AC=1;AF=0.333;AN=3;AS_AltDP=19;AS_QD=34.74;DP=66;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=34.74;SOR=1.292;VarDP=19 GT:AD:DP:GQ:MIN_DP:PL:SB 1:0,19:19:99:.:660,0:0,0,12,7 0/0:.:47:79:47:0,79,1121 +chrX 4981887 . G A 2292 . AC=3;AF=1.00;AN=3;AS_AltDP=69;AS_QD=33.65;DP=69;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.65;SOR=0.910;VarDP=69 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:790,0:0,0,9,14 1/1:0,46:46:99:1532,138,0:0,0,22,24 +chrX 4982092 . C T 1393 . AC=2;AF=0.667;AN=3;AS_AltDP=48;AS_QD=20.93;BaseQRankSum=-0.979;DP=72;ExcessHet=0.0000;FS=1.022;MQ=60.00;MQRankSum=0;QD=20.93;ReadPosRankSum=-0.286;SOR=0.507;VarDP=68 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:739,0:0,0,13,10 0/1:20,25:45:99:684,0,510:12,8,13,12 +chrX 4982542 . G A 1368 . AC=2;AF=0.667;AN=3;AS_AltDP=46;AS_QD=21.18;BaseQRankSum=0.169;DP=66;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=21.18;ReadPosRankSum=0.841;SOR=0.780;VarDP=66 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:749,0:0,0,10,13 0/1:20,23:43:99:649,0,546:10,10,12,11 +chrX 4982920 . A G 238 . AC=1;AF=0.333;AN=3;AS_AltDP=13;AS_QD=5.25;BaseQRankSum=-1.106;DP=81;ExcessHet=0.0000;FS=2.725;MQ=60.00;MQRankSum=0;QD=5.25;ReadPosRankSum=-0.735;SOR=1.179;VarDP=51 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:26:99:26:0,571 0/1:38,13:51:99:.:268,0,1128:19,19,5,8 +chrX 4983081 . A G 1209 . AC=2;AF=0.667;AN=3;AS_AltDP=43;AS_QD=14.24;BaseQRankSum=1.238;DP=90;ExcessHet=0.0000;FS=1.752;MQ=60.00;MQRankSum=0;QD=14.24;ReadPosRankSum=-0.184;SOR=0.945;VarDP=87 GT:AD:DP:GQ:PL:SB 1:0,27:27:99:883,0:0,0,9,18 0/1:44,16:60:99:356,0,1199:21,23,9,7 +chrX 4983204 . A G 2380 . AC=3;AF=1.00;AN=3;AS_AltDP=77;AS_QD=31.30;DP=83;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=31.30;SOR=0.828;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:913,0:0,0,16,12 1/1:0,49:49:99:1497,146,0:0,0,25,24 +chrX 4983487 . G A 1225 . AC=2;AF=0.667;AN=3;AS_AltDP=41;AS_QD=17.93;BaseQRankSum=1.591;DP=72;ExcessHet=0.0000;FS=2.021;MQ=60.00;MQRankSum=0;QD=17.93;ReadPosRankSum=-0.033;SOR=0.693;VarDP=70 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:790,0:0,0,9,14 0/1:29,18:47:99:465,0,762:16,13,10,8 +chrX 4983639 . T C 570 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=15.00;BaseQRankSum=0.712;DP=71;ExcessHet=0.0000;FS=6.647;MQ=60.00;MQRankSum=0;QD=15.00;ReadPosRankSum=-0.19;SOR=0.365;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:25:99:25:0,348 0/1:19,21:40:99:.:600,0,520:13,6,10,11 +chrX 4983657 . G A 738 . AC=1;AF=0.333;AN=3;AS_AltDP=27;AS_QD=15.36;BaseQRankSum=1.089;DP=75;ExcessHet=0.0000;FS=4.001;MQ=60.00;MQRankSum=0;QD=15.36;ReadPosRankSum=-0.467;SOR=0.310;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:25:99:25:0,348 0/1:23,27:50:99:.:768,0,608:15,8,14,13 +chrX 4984107 . T C 1345 . AC=2;AF=0.667;AN=3;AS_AltDP=45;AS_QD=23.31;BaseQRankSum=-2.295;DP=59;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=23.31;ReadPosRankSum=-0.032;SOR=0.829;VarDP=59 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:789,0:0,0,12,11 0/1:14,22:36:99:586,0,379:7,7,9,13 +chrX 4984191 . T C 1431 . AC=2;AF=0.667;AN=3;AS_AltDP=49;AS_QD=20.29;BaseQRankSum=2.059;DP=81;ExcessHet=0.0000;FS=16.038;MQ=60.00;MQRankSum=0;QD=20.29;ReadPosRankSum=0.1;SOR=0.491;VarDP=72 GT:AD:DP:GQ:PL:SB 1:0,23:23:99:759,0:0,0,10,13 0/1:23,26:49:99:702,0,538:6,17,17,9 +chrX 4984354 . G A 1626 . AC=2;AF=0.667;AN=3;AS_AltDP=56;AS_QD=20.44;BaseQRankSum=-1.451;DP=85;ExcessHet=0.0000;FS=10.296;MQ=60.00;MQRankSum=0;QD=20.44;ReadPosRankSum=-0.272;SOR=0.450;VarDP=81 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:818,0:0,0,10,15 0/1:25,31:56:99:838,0,681:17,8,16,15 +chrX 4984452 . C G 1523 . AC=2;AF=0.667;AN=3;AS_AltDP=50;AS_QD=20.99;BaseQRankSum=0.08;DP=74;ExcessHet=0.0000;FS=0.940;MQ=60.00;MQRankSum=0;QD=20.99;ReadPosRankSum=2.558;SOR=0.549;VarDP=74 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:903,0:0,0,14,12 0/1:24,24:48:99:650,0,635:14,10,13,11 +chrX 4984506 . T C 1551 . AC=2;AF=0.667;AN=3;AS_AltDP=53;AS_QD=21.66;BaseQRankSum=-1.263;DP=76;ExcessHet=0.0000;FS=0.980;MQ=60.00;MQRankSum=0;QD=21.66;ReadPosRankSum=-0.538;SOR=0.558;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:873,0:0,0,17,9 0/1:20,27:47:99:708,0,507:11,9,10,17 +chrX 4984537 . C T 1488 . AC=2;AF=0.667;AN=3;AS_AltDP=50;AS_QD=19.71;BaseQRankSum=0.251;DP=77;ExcessHet=0.0000;FS=0.892;MQ=60.00;MQRankSum=0;QD=19.71;ReadPosRankSum=0.151;SOR=0.571;VarDP=77 GT:AD:DP:GQ:PL:SB 1:0,24:24:99:834,0:0,0,18,6 0/1:27,26:53:99:684,0,709:15,12,8,18 +chrX 4984565 . G C 1446 . AC=2;AF=0.667;AN=3;AS_AltDP=48;AS_QD=19.42;BaseQRankSum=0.638;DP=82;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=19.42;ReadPosRankSum=0.46;SOR=0.693;VarDP=76 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:902,0:0,0,19,7 0/1:28,22:50:99:574,0,738:14,14,5,17 +chrX 4985030 . C T 1555 . AC=2;AF=0.667;AN=3;AS_AltDP=52;AS_QD=18.22;BaseQRankSum=2.894;DP=87;ExcessHet=0.0000;FS=10.928;MQ=60.00;MQRankSum=0;QD=18.22;ReadPosRankSum=1.136;SOR=0.783;VarDP=87 GT:AD:DP:GQ:PL:SB 1:1,28:29:99:934,0:0,1,10,18 0/1:34,24:58:99:651,0,928:22,12,12,12 +chrX 4985238 . T C 521 . AC=1;AF=0.333;AN=3;AS_AltDP=22;AS_QD=11.02;BaseQRankSum=0.747;DP=82;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=11.02;ReadPosRankSum=0.714;SOR=0.727;VarDP=50 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,606 0/1:28,22:50:99:.:551,0,704:15,13,12,10 +chrX 4985482 . G A 532 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=16.53;BaseQRankSum=0.839;DP=67;ExcessHet=0.0000;FS=7.791;MQ=60.00;MQRankSum=0;QD=16.53;ReadPosRankSum=0.746;SOR=1.319;VarDP=34 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:31:99:31:.:.:0,606 0|1:19,15:34:99:.:0|1:4985482_G_A:562,0,742:4985482:7,12,10,5 +chrX 4985491 . C A 528 . AC=1;AF=0.333;AN=3;AS_AltDP=15;AS_QD=15.94;BaseQRankSum=0.378;DP=67;ExcessHet=0.0000;FS=5.023;MQ=60.00;MQRankSum=0;QD=15.94;ReadPosRankSum=0.9;SOR=0.924;VarDP=35 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:31:99:31:.:.:0,606 0|1:20,15:35:99:.:0|1:4985482_G_A:558,0,774:4985482:8,12,9,6 +chrX 4985623 . G T 882 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=19.40;BaseQRankSum=0.03;DP=78;ExcessHet=0.0000;FS=4.125;MQ=60.00;MQRankSum=0;QD=19.40;ReadPosRankSum=-0.309;SOR=0.907;VarDP=47 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:31:99:31:.:.:0,606 0|1:23,24:47:99:.:0|1:4985623_G_T:912,0,894:4985623:13,10,10,14 +chrX 4985624 . A T 882 . AC=1;AF=0.333;AN=3;AS_AltDP=24;AS_QD=19.40;BaseQRankSum=-1.369;DP=78;ExcessHet=0.0000;FS=4.125;MQ=60.00;MQRankSum=0;QD=19.40;ReadPosRankSum=-0.266;SOR=0.907;VarDP=47 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:PS:SB 0:.:31:99:31:.:.:0,606 0|1:23,24:47:99:.:0|1:4985623_G_T:912,0,894:4985623:13,10,10,14 +chrX 4985649 . A G 523 . AC=1;AF=0.333;AN=3;AS_AltDP=21;AS_QD=12.57;BaseQRankSum=-0.598;DP=76;ExcessHet=0.0000;FS=4.376;MQ=60.00;MQRankSum=0;QD=12.57;ReadPosRankSum=1.81;SOR=0.758;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,606 0/1:23,21:44:99:.:553,0,647:14,9,9,12 +chrX 4986105 . C A 2542 . AC=3;AF=1.00;AN=3;AS_AltDP=78;AS_QD=32.97;DP=79;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.97;SOR=0.744;VarDP=78 GT:AD:DP:GQ:PL:SB 1:0,30:30:99:933,0:0,0,16,14 1/1:0,48:48:99:1639,144,0:0,0,24,24 +chrX 4988522 . G C 2534 . AC=3;AF=1.00;AN=3;AS_AltDP=80;AS_QD=32.05;DP=82;ExcessHet=0.0000;FS=0.000;MQ=59.52;QD=32.05;SOR=0.743;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:840,0:0,0,15,11 1/1:0,54:54:99:1724,161,0:0,0,26,28 +chrX 4989098 . TCCTCCTTC T 1299.97 . AC=3;AF=1.00;AN=3;AS_AltDP=31;AS_QD=30.98;DP=43;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=43.19;SOR=2.376;VarDP=31 GT:AD:DP:GQ:PL:SB 1:0,11:11:99:496,0:0,0,4,7 1/1:0,20:20:60:843,60,0:0,0,3,17 +chrX 4989695 . T A 2619 . AC=3;AF=1.00;AN=3;AS_AltDP=82;AS_QD=32.30;DP=84;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.30;SOR=0.693;VarDP=82 GT:AD:DP:GQ:PL:SB 1:0,33:33:99:1077,0:0,0,18,15 1/1:0,49:49:99:1572,146,0:0,0,23,26 +chrX 4990002 . G A 2654 . AC=3;AF=1.00;AN=3;AS_AltDP=83;AS_QD=32.34;DP=85;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.34;SOR=0.766;VarDP=83 GT:AD:DP:GQ:PL:SB 1:0,28:28:99:963,0:0,0,17,11 1/1:0,55:55:99:1721,164,0:0,0,26,29 +chrX 4990471 . C CTTTG 4608.97 . AC=3;AF=1.00;AN=3;AS_AltDP=104;AS_QD=25.58;BaseQRankSum=1.582;DP=110;ExcessHet=0.0000;FS=3.052;MQ=60.00;MQRankSum=0;QD=44.27;ReadPosRankSum=1.664;SOR=0.284;VarDP=105 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:1305,0:0,0,13,16 1/1:1,75:76:99:3343,219,0:1,0,38,37 +chrX 4990505 . A G 928 . AC=1;AF=0.333;AN=3;AS_AltDP=36;AS_QD=13.12;BaseQRankSum=-0.591;DP=107;ExcessHet=0.0000;FS=0.000;MQ=60.00;MQRankSum=0;QD=13.12;ReadPosRankSum=0.877;SOR=0.643;VarDP=73 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:33:99:33:0,868 0/1:37,36:73:99:.:958,0,985:19,18,18,18 +chrX 4990746 . A T 3020 . AC=3;AF=1.00;AN=3;AS_AltDP=92;AS_QD=33.15;DP=95;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.15;SOR=0.878;VarDP=92 GT:AD:DP:GQ:PL:SB 1:0,34:34:99:1102,0:0,0,16,18 1/1:0,58:58:99:1948,174,0:0,0,26,32 +chrX 4992003 . C T 571 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=13.98;BaseQRankSum=0.162;DP=74;ExcessHet=0.0000;FS=1.171;MQ=60.00;MQRankSum=0;QD=13.98;ReadPosRankSum=-2.326;SOR=0.963;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:30:99:30:0,575 0/1:20,23:43:99:.:601,0,512:10,10,13,10 +chrX 4992040 . T C 2629 . AC=3;AF=1.00;AN=3;AS_AltDP=80;AS_QD=33.24;DP=81;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.24;SOR=0.796;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,26:26:99:874,0:0,0,9,17 1/1:0,54:54:99:1785,162,0:0,0,29,25 +chrX 4992064 . T A 2351 . AC=3;AF=1.00;AN=3;AS_AltDP=73;AS_QD=32.62;DP=79;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.62;SOR=0.963;VarDP=73 GT:AD:DP:GQ:PL:SB 1:0,32:32:99:1026,0:0,0,14,18 1/1:0,41:41:99:1355,123,0:0,0,18,23 +chrX 4992364 . G T 2144 . AC=3;AF=1.00;AN=3;AS_AltDP=65;AS_QD=33.45;DP=67;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=33.45;SOR=0.787;VarDP=65 GT:AD:DP:GQ:PL:SB 1:0,25:25:99:849,0:0,0,12,13 1/1:0,40:40:99:1325,120,0:0,0,22,18 +chrX 4993635 . A T 509 . AC=1;AF=0.333;AN=3;AS_AltDP=20;AS_QD=12.83;BaseQRankSum=0.702;DP=69;ExcessHet=0.0000;FS=4.506;MQ=60.00;MQRankSum=0;QD=12.83;ReadPosRankSum=0.504;SOR=0.954;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:25:99:25:0,411 0/1:22,20:42:99:.:539,0,574:9,13,12,8 +chrX 4994148 . G A 1906 . AC=2;AF=0.667;AN=3;AS_AltDP=65;AS_QD=18.98;BaseQRankSum=2.613;DP=104;ExcessHet=0.0000;FS=18.879;MQ=60.00;MQRankSum=0;QD=18.98;ReadPosRankSum=-1.341;SOR=0.894;VarDP=102 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:987,0:0,0,12,19 0/1:37,34:71:99:949,0,933:25,12,14,20 +chrX 4995103 . A G 636 . AC=1;AF=0.333;AN=3;AS_AltDP=26;AS_QD=10.92;BaseQRankSum=0.394;DP=95;ExcessHet=0.0000;FS=3.665;MQ=60.00;MQRankSum=0;QD=10.92;ReadPosRankSum=-0.321;SOR=0.330;VarDP=61 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:31:99:31:0,749 0/1:35,26:61:99:.:666,0,1004:23,12,14,12 +chrX 4995473 . A G 2551 . AC=3;AF=1.00;AN=3;AS_AltDP=79;AS_QD=32.26;BaseQRankSum=-0.311;DP=84;ExcessHet=0.0000;FS=0.000;MQ=59.99;MQRankSum=0;QD=32.26;ReadPosRankSum=1.202;SOR=0.263;VarDP=80 GT:AD:DP:GQ:PL:SB 1:0,31:31:99:1010,0:0,0,13,18 1/1:1,48:49:99:1571,113,0:1,0,26,22 +chrX 4996387 . T C 2530 . AC=3;AF=1.00;AN=3;AS_AltDP=83;AS_QD=30.12;BaseQRankSum=-0.911;DP=89;ExcessHet=0.0000;FS=6.177;MQ=60.00;MQRankSum=0;QD=30.12;ReadPosRankSum=0.795;SOR=0.233;VarDP=85 GT:AD:DP:GQ:PL:SB 1:0,29:29:99:938,0:0,0,13,16 1/1:2,54:56:98:1622,98,0:0,2,30,24 +chrX 4997934 . C A 555 . AC=1;AF=0.333;AN=3;AS_AltDP=23;AS_QD=10.09;BaseQRankSum=-0.986;DP=84;ExcessHet=0.0000;FS=2.276;MQ=60.00;MQRankSum=0;QD=10.09;ReadPosRankSum=-1.694;SOR=1.105;VarDP=58 GT:AD:DP:GQ:MIN_DP:PL:SB 0:.:25:99:25:0,386 0/1:35,23:58:99:.:585,0,1012:17,18,9,14 +chrX 4998618 . A G 2292 . AC=3;AF=1.00;AN=3;AS_AltDP=71;AS_QD=32.70;DP=72;ExcessHet=0.0000;FS=0.000;MQ=60.00;QD=32.70;SOR=0.779;VarDP=71 GT:AD:DP:GQ:PL:SB 1:0,22:22:99:714,0:0,0,14,8 1/1:0,49:49:99:1608,147,0:0,0,20,29 +chrX 4998972 . TAATAAATA T,TAATA 802.97 . AC=1,1;AF=0.333,0.333;AN=3;AS_AltDP=11,10;AS_QD=17.89,13.81;BaseQRankSum=-0.329;DP=68;ExcessHet=0.0000;FS=1.314;MQ=60.00;MQRankSum=0;QD=22.76;ReadPosRankSum=0.404;SOR=0.393;VarDP=37 GT:AD:DP:GQ:PL:SB 1:0,11,0:11:99:483,0,483:0,0,6,5 0/2:16,0,10:26:99:359,407,1032,0,625,595:6,10,4,6 diff --git a/src/test/resources/org/broadinstitute/hellbender/tools/walkers/GnarlyGenotyper/lotsOfAltsNoPLs.vcf b/src/test/resources/org/broadinstitute/hellbender/tools/walkers/GnarlyGenotyper/lotsOfAltsNoPLs.vcf index cfc8ce7d87c..86309ceb3e2 100644 --- a/src/test/resources/org/broadinstitute/hellbender/tools/walkers/GnarlyGenotyper/lotsOfAltsNoPLs.vcf +++ b/src/test/resources/org/broadinstitute/hellbender/tools/walkers/GnarlyGenotyper/lotsOfAltsNoPLs.vcf @@ -29,7 +29,7 @@ ##INFO= ##INFO= ##INFO= -##INFO= +##INFO= ##INFO= ##INFO= ##INFO= diff --git a/src/test/resources/org/broadinstitute/hellbender/tools/walkers/GnarlyGenotyper/lotsOfAltsYesPLs.vcf b/src/test/resources/org/broadinstitute/hellbender/tools/walkers/GnarlyGenotyper/lotsOfAltsYesPLs.vcf index 0d4bafdc331..17961b44370 100644 --- a/src/test/resources/org/broadinstitute/hellbender/tools/walkers/GnarlyGenotyper/lotsOfAltsYesPLs.vcf +++ b/src/test/resources/org/broadinstitute/hellbender/tools/walkers/GnarlyGenotyper/lotsOfAltsYesPLs.vcf @@ -29,7 +29,7 @@ ##INFO= ##INFO= ##INFO= -##INFO= +##INFO= ##INFO= ##INFO= ##INFO=