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@clinicalml

Sontag Lab

Machine learning algorithms and applications to health care.

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  1. structuredinference structuredinference Public

    Structured Inference Networks for Nonlinear State Space Models

    Jupyter Notebook 264 65

  2. embeddings embeddings Public

    Code for AMIA CRI 2016 paper "Learning Low-Dimensional Representations of Medical Concepts"

    Python 243 77

  3. cfrnet cfrnet Public

    Counterfactual Regression

    Python 289 81

  4. HealthKnowledgeGraph HealthKnowledgeGraph Public

    Health knowledge graph for 157 diseases and 491 symptoms, learned from >270,000 patients' data

    91 30

  5. omop-learn omop-learn Public

    Python package for machine learning for healthcare using a OMOP common data model

    Python 100 25

  6. prancer prancer Public

    Platform enabling Rapid Annotation for Clinical Entity Recognition

    JavaScript 49 12

Repositories

Showing 10 of 60 repositories
  • sc-foundation-eval Public

    Code for evaluating single cell foundation models scBERT and scGPT

    clinicalml/sc-foundation-eval’s past year of commit activity
    Jupyter Notebook 29 BSD-3-Clause 4 2 0 Updated Aug 25, 2024
  • large-scale-temporal-shift-study Public

    Code for Large-Scale Study of Temporal Shift in Health Insurance Claims. Christina X Ji, Ahmed M Alaa, David Sontag. CHIL, 2023. https://arxiv.org/abs/2305.05087

    clinicalml/large-scale-temporal-shift-study’s past year of commit activity
    Python 4 0 6 0 Updated Aug 14, 2024
  • seq_to_final_benchmark Public

    Code for Seq-to-Final: A Benchmark for Tuning from Sequential Distributions to a Final Time Point. Christina X Ji, Ahmed M Alaa, David Sontag. https://arxiv.org/abs/2407.09642

    clinicalml/seq_to_final_benchmark’s past year of commit activity
    Python 0 0 0 0 Updated Jul 9, 2024
  • finding-decision-heterogeneity-regions Public

    Code for "Finding Regions of Heterogeneity in Decision-Making via Expected Conditional Covariance" at NeurIPS 2021 https://arxiv.org/abs/2110.14508

    clinicalml/finding-decision-heterogeneity-regions’s past year of commit activity
    Jupyter Notebook 3 1 0 0 Updated Jun 18, 2024
  • clinicalml/realhumaneval’s past year of commit activity
    Jupyter Notebook 11 CC0-1.0 2 0 0 Updated Jun 13, 2024
  • clinicalml-scBERT-NMI Public

    analysis code to reproduce results in NMI submission

    clinicalml/clinicalml-scBERT-NMI’s past year of commit activity
    Jupyter Notebook 2 BSD-3-Clause 1 0 0 Updated Jun 1, 2024
  • co-llm Public

    Co-LLM: Learning to Decode Collaboratively with Multiple Language Models

    clinicalml/co-llm’s past year of commit activity
    Python 86 7 0 0 Updated May 7, 2024
  • onboarding_human_ai Public

    Onboarding Humans to work with AI: Algorithms to find regions and describe them in natural language that show how humans should collaborate with AI (NeurIPS23)

    clinicalml/onboarding_human_ai’s past year of commit activity
    Jupyter Notebook 10 3 0 0 Updated Mar 15, 2024
  • SCOPE Public Forked from edebrouwer/SCOPE

    Codebase for SCOPE architecture.

    clinicalml/SCOPE’s past year of commit activity
    Python 1 1 0 0 Updated Feb 7, 2024
  • human_ai_deferral Public

    Human-AI Deferral Evaluation Benchmark (Learning to Defer) AISTATS23

    clinicalml/human_ai_deferral’s past year of commit activity
    Python 18 1 1 0 Updated Jan 8, 2024

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