{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":616485945,"defaultBranch":"main","name":"scCoAnnotate","ownerLogin":"fungenomics","currentUserCanPush":false,"isFork":true,"isEmpty":false,"createdAt":"2023-03-20T13:35:47.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/48287846?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1721206572.0","currentOid":""},"activityList":{"items":[{"before":"dd44c0eb366cc0a9e42167a0523b44afe71fddaa","after":"83f09d221abe501667c91e125c3361363d7750ba","ref":"refs/heads/main","pushedAt":"2024-07-17T08:54:55.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"alvaannett","name":null,"path":"/alvaannett","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/46521652?s=80&v=4"},"commit":{"message":"Merge pull request #130 from fungenomics/dev\n\nmoved ontology processing to separate rule (#129)","shortMessageHtmlLink":"Merge pull request #130 from fungenomics/dev"}},{"before":"42c47877900e457b8f48bbb9fdbfe315a1dc3e65","after":"dd44c0eb366cc0a9e42167a0523b44afe71fddaa","ref":"refs/heads/main","pushedAt":"2024-07-16T12:19:43.000Z","pushType":"push","commitsCount":5,"pusher":{"login":"alvaannett","name":null,"path":"/alvaannett","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/46521652?s=80&v=4"},"commit":{"message":"Merge pull request #125 from fungenomics/dev\n\nscCoAnnotate v3.0.1","shortMessageHtmlLink":"Merge pull request #125 from fungenomics/dev"}},{"before":"8a2585dc67d188a9af72bf32b9f06ee0e6617c6b","after":"42c47877900e457b8f48bbb9fdbfe315a1dc3e65","ref":"refs/heads/main","pushedAt":"2024-07-08T18:47:12.000Z","pushType":"push","commitsCount":80,"pusher":{"login":"alvaannett","name":null,"path":"/alvaannett","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/46521652?s=80&v=4"},"commit":{"message":"merge dev main  (#115) (#116)\n\n* scCoAnnotate v3 (#74)\r\n\r\n* Dev fix annotation notebook (#69)\r\n\r\n* output prob matrix + add some figures to notebooks\r\n\r\n* updated config and example config\r\n\r\n* updated plots\r\n\r\n* Update example.config.yml\r\n\r\n* Update README.md\r\n\r\n* CAWPE and associated file updates (#72)\r\n\r\n* Updated plots + fix bug + additional options for consensus  (#70)\r\n\r\n* Dev fix annotation notebook (#69)\r\n\r\n* output prob matrix + add some figures to notebooks\r\n\r\n* updated config and example config\r\n\r\n* updated plots\r\n\r\n* Update example.config.yml\r\n\r\n* Update README.md\r\n\r\n* CAWPE and associated accomodations\r\n\r\n---------\r\n\r\n\r\n\r\n* Dev cawpe alva (#73)\r\n\r\n* cleaned up CAWPE.R script. 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snakefile\r\n\r\n* Update calculate_consensus.R\r\n\r\n* Update calculate_consensus.R\r\n\r\n* Dev alva fix notebooks (#86)\r\n\r\n* merged consensus scripts. updated notbooks with cawpe umap\r\n\r\n* archived old CAWPE script\r\n\r\n* Update README.md\r\n\r\n* Update example.config.yml\r\n\r\n* Update example.config.yml\r\n\r\n* Update config.default.yml\r\n\r\n* Update README.md\r\n\r\n* Update README.md\r\n\r\n* Update README.md\r\n\r\n* Add seed on preprocess.R\r\n\r\n* Add empty output_dir_benchmark to default config\r\n\r\n* Update snakefile.annotate\r\n\r\nBug fixed on train_SingleR\r\n\r\n* Fix consensus for specified number of tools (temp fix)\r\n\r\n* Feature: multiple-consensus calculation & ontology (#88)\r\n\r\n* Feature: multiple-consensus calculation\r\n\r\n* Feature: Downsampling+min_cluster_per_cell per reference\r\n\r\n* Feature: Ontology on the annotation pipeline added (#89)\r\n\r\n* Pull request comments & now the convertion of genes is inside each 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