{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":559894899,"defaultBranch":"main","name":"nf-snvcalling","ownerLogin":"ghga-de","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2022-10-31T10:21:08.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/57182493?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1726063517.0","currentOid":""},"activityList":{"items":[{"before":"539fb9cbb934c11a2e4619ed925e9c254bc932d8","after":"1b9eae5e6d7609a8ae5a2fbc9a9da9ed3e7f0f45","ref":"refs/heads/38-bam-path-from-meta-creates-issues","pushedAt":"2024-09-11T14:06:44.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"kubranarci","name":"Kübra Narcı","path":"/kubranarci","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25736789?s=80&v=4"},"commit":{"message":"fix grep_samplename.nf","shortMessageHtmlLink":"fix grep_samplename.nf"}},{"before":null,"after":"539fb9cbb934c11a2e4619ed925e9c254bc932d8","ref":"refs/heads/38-bam-path-from-meta-creates-issues","pushedAt":"2024-09-11T14:05:17.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"kubranarci","name":"Kübra Narcı","path":"/kubranarci","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25736789?s=80&v=4"},"commit":{"message":"Update CHANGELOG.md","shortMessageHtmlLink":"Update CHANGELOG.md"}},{"before":"1d9554b12ed75e8a856bccf9acd10741cf06114d","after":"539fb9cbb934c11a2e4619ed925e9c254bc932d8","ref":"refs/heads/main","pushedAt":"2024-06-24T11:32:29.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"kubranarci","name":"Kübra Narcı","path":"/kubranarci","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25736789?s=80&v=4"},"commit":{"message":"Update CHANGELOG.md","shortMessageHtmlLink":"Update CHANGELOG.md"}},{"before":"d456009e472ec4b65c3fae3694141422327014c5","after":null,"ref":"refs/heads/35-raw-vcf-is-not-sorted","pushedAt":"2024-06-24T09:51:17.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"kubranarci","name":"Kübra Narcı","path":"/kubranarci","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25736789?s=80&v=4"}},{"before":"a4e5bad818c1144d3e2dbfa19379a00ab2af45bf","after":"1d9554b12ed75e8a856bccf9acd10741cf06114d","ref":"refs/heads/main","pushedAt":"2024-06-24T09:50:59.000Z","pushType":"pr_merge","commitsCount":9,"pusher":{"login":"kubranarci","name":"Kübra Narcı","path":"/kubranarci","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25736789?s=80&v=4"},"commit":{"message":"Merge pull request #36 from ghga-de/35-raw-vcf-is-not-sorted\n\n35 raw vcf is not sorted","shortMessageHtmlLink":"Merge pull request #36 from ghga-de/35-raw-vcf-is-not-sorted"}},{"before":"7187c57f6e17dce2240ad1fe9965d3582768938b","after":"d456009e472ec4b65c3fae3694141422327014c5","ref":"refs/heads/35-raw-vcf-is-not-sorted","pushedAt":"2024-06-24T08:09:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"kubranarci","name":"Kübra Narcı","path":"/kubranarci","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25736789?s=80&v=4"},"commit":{"message":"outputs","shortMessageHtmlLink":"outputs"}},{"before":"286faf0aa0b288adc69c26bfa23ca074e951e036","after":"7187c57f6e17dce2240ad1fe9965d3582768938b","ref":"refs/heads/35-raw-vcf-is-not-sorted","pushedAt":"2024-06-21T13:14:33.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"kubranarci","name":"Kübra Narcı","path":"/kubranarci","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25736789?s=80&v=4"},"commit":{"message":"--output-file","shortMessageHtmlLink":"--output-file"}},{"before":"c96c5393ef54b4224aa509716cf95388f6659cbb","after":"286faf0aa0b288adc69c26bfa23ca074e951e036","ref":"refs/heads/35-raw-vcf-is-not-sorted","pushedAt":"2024-06-21T12:06:36.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"kubranarci","name":"Kübra Narcı","path":"/kubranarci","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25736789?s=80&v=4"},"commit":{"message":"bcftools docker new image","shortMessageHtmlLink":"bcftools docker new image"}},{"before":"459c4207b4adc494e578963a19b29754be0d432b","after":"c96c5393ef54b4224aa509716cf95388f6659cbb","ref":"refs/heads/35-raw-vcf-is-not-sorted","pushedAt":"2024-06-20T15:09:07.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"kubranarci","name":"Kübra Narcı","path":"/kubranarci","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25736789?s=80&v=4"},"commit":{"message":"back to docker","shortMessageHtmlLink":"back to docker"}},{"before":"ff6fd9f504e3d5c9455ac16316f71aefc1cdc2f6","after":"459c4207b4adc494e578963a19b29754be0d432b","ref":"refs/heads/35-raw-vcf-is-not-sorted","pushedAt":"2024-06-20T14:38:43.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"kubranarci","name":"Kübra Narcı","path":"/kubranarci","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25736789?s=80&v=4"},"commit":{"message":"run on singularity","shortMessageHtmlLink":"run on singularity"}},{"before":"b89418c88620cdd3723d9b0610a2f89b80a5b768","after":"ff6fd9f504e3d5c9455ac16316f71aefc1cdc2f6","ref":"refs/heads/35-raw-vcf-is-not-sorted","pushedAt":"2024-06-20T13:12:17.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"kubranarci","name":"Kübra Narcı","path":"/kubranarci","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25736789?s=80&v=4"},"commit":{"message":"fix sorting pipe","shortMessageHtmlLink":"fix sorting pipe"}},{"before":"c093611bbb56281f4b1f9f2f1590ef85416ff7b0","after":"b89418c88620cdd3723d9b0610a2f89b80a5b768","ref":"refs/heads/35-raw-vcf-is-not-sorted","pushedAt":"2024-06-17T14:37:15.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"kubranarci","name":"Kübra Narcı","path":"/kubranarci","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25736789?s=80&v=4"},"commit":{"message":"docker changed","shortMessageHtmlLink":"docker changed"}},{"before":"a4e5bad818c1144d3e2dbfa19379a00ab2af45bf","after":"c093611bbb56281f4b1f9f2f1590ef85416ff7b0","ref":"refs/heads/35-raw-vcf-is-not-sorted","pushedAt":"2024-06-17T08:01:33.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"kubranarci","name":"Kübra Narcı","path":"/kubranarci","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25736789?s=80&v=4"},"commit":{"message":"sort raw vcf","shortMessageHtmlLink":"sort raw vcf"}},{"before":null,"after":"a4e5bad818c1144d3e2dbfa19379a00ab2af45bf","ref":"refs/heads/35-raw-vcf-is-not-sorted","pushedAt":"2024-06-11T11:35:25.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"kubranarci","name":"Kübra Narcı","path":"/kubranarci","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25736789?s=80&v=4"},"commit":{"message":"Merge pull request #34 from ghga-de/20-output-proper-vcf\n\nre-arrange resources for dkfz cluster","shortMessageHtmlLink":"Merge pull request #34 from ghga-de/20-output-proper-vcf"}},{"before":"cebc260960f5807d4abfa1e26d991a9ee546be9f","after":null,"ref":"refs/heads/20-output-proper-vcf","pushedAt":"2024-06-11T07:57:20.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"kubranarci","name":"Kübra Narcı","path":"/kubranarci","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25736789?s=80&v=4"}},{"before":"955868b5f0b51da87e0cd221c9dea10d5b289333","after":"a4e5bad818c1144d3e2dbfa19379a00ab2af45bf","ref":"refs/heads/main","pushedAt":"2024-06-11T07:57:12.000Z","pushType":"pr_merge","commitsCount":14,"pusher":{"login":"kubranarci","name":"Kübra Narcı","path":"/kubranarci","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25736789?s=80&v=4"},"commit":{"message":"Merge pull request #34 from ghga-de/20-output-proper-vcf\n\nre-arrange resources for dkfz cluster","shortMessageHtmlLink":"Merge pull request #34 from ghga-de/20-output-proper-vcf"}},{"before":"981d74d4a9b7e87aec89a3a7a67be25840de6244","after":"cebc260960f5807d4abfa1e26d991a9ee546be9f","ref":"refs/heads/20-output-proper-vcf","pushedAt":"2024-06-11T07:21:17.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"kubranarci","name":"Kübra Narcı","path":"/kubranarci","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25736789?s=80&v=4"},"commit":{"message":"fix ctrl params in mpileup_compare","shortMessageHtmlLink":"fix ctrl params in mpileup_compare"}},{"before":"310d8632fb2ab7479574cd5b47271baa5e1addee","after":"981d74d4a9b7e87aec89a3a7a67be25840de6244","ref":"refs/heads/20-output-proper-vcf","pushedAt":"2024-06-10T08:44:08.000Z","pushType":"push","commitsCount":5,"pusher":{"login":"NagaComBio","name":"Nagarajan Paramasivam","path":"/NagaComBio","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1172052?s=80&v=4"},"commit":{"message":"Reduce ctrl_qual_cutoff to one for ALT/HLA contigs","shortMessageHtmlLink":"Reduce ctrl_qual_cutoff to one for ALT/HLA contigs"}},{"before":"181d486fa5b18fc2414e3b28b3560647198a2add","after":"310d8632fb2ab7479574cd5b47271baa5e1addee","ref":"refs/heads/20-output-proper-vcf","pushedAt":"2024-05-21T14:04:50.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"kubranarci","name":"Kübra Narcı","path":"/kubranarci","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25736789?s=80&v=4"},"commit":{"message":"final final fix contigs","shortMessageHtmlLink":"final final fix contigs"}},{"before":"46fc4d710362aab9775e9e48d36b6104d1878119","after":"181d486fa5b18fc2414e3b28b3560647198a2add","ref":"refs/heads/20-output-proper-vcf","pushedAt":"2024-05-21T08:36:52.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"kubranarci","name":"Kübra Narcı","path":"/kubranarci","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25736789?s=80&v=4"},"commit":{"message":"fix config channel","shortMessageHtmlLink":"fix config channel"}},{"before":"2e79eee5d734f01f2d0f0588573e0bd529649a9a","after":"46fc4d710362aab9775e9e48d36b6104d1878119","ref":"refs/heads/20-output-proper-vcf","pushedAt":"2024-05-17T10:48:59.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"kubranarci","name":"Kübra Narcı","path":"/kubranarci","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25736789?s=80&v=4"},"commit":{"message":"config processing fixed","shortMessageHtmlLink":"config processing fixed"}},{"before":"2af96794ea014e2f5ed3812ac399961ead463919","after":"2e79eee5d734f01f2d0f0588573e0bd529649a9a","ref":"refs/heads/20-output-proper-vcf","pushedAt":"2024-05-14T08:24:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"kubranarci","name":"Kübra Narcı","path":"/kubranarci","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25736789?s=80&v=4"},"commit":{"message":"fix interval problem","shortMessageHtmlLink":"fix interval problem"}},{"before":"09654a1c78eea3d7ad7a563d9e94f5b9300e57f7","after":"2af96794ea014e2f5ed3812ac399961ead463919","ref":"refs/heads/20-output-proper-vcf","pushedAt":"2024-05-08T08:55:45.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"kubranarci","name":"Kübra Narcı","path":"/kubranarci","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25736789?s=80&v=4"},"commit":{"message":"MAFcommon added","shortMessageHtmlLink":"MAFcommon added"}},{"before":"20b94a0b9df9638700264f963547bd1ba52b5e07","after":"09654a1c78eea3d7ad7a563d9e94f5b9300e57f7","ref":"refs/heads/20-output-proper-vcf","pushedAt":"2024-05-07T15:07:22.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"kubranarci","name":"Kübra Narcı","path":"/kubranarci","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25736789?s=80&v=4"},"commit":{"message":"dealing better with contigs","shortMessageHtmlLink":"dealing better with contigs"}},{"before":null,"after":"20b94a0b9df9638700264f963547bd1ba52b5e07","ref":"refs/heads/20-output-proper-vcf","pushedAt":"2024-04-30T08:28:53.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"kubranarci","name":"Kübra Narcı","path":"/kubranarci","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25736789?s=80&v=4"},"commit":{"message":"re-arrange resources for dkfz cluster","shortMessageHtmlLink":"re-arrange resources for dkfz cluster"}},{"before":"acfd558ddefc71ad6bbd7049692e9df35115d703","after":null,"ref":"refs/heads/20-output-proper-vcf","pushedAt":"2024-04-24T06:05:23.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"kubranarci","name":"Kübra Narcı","path":"/kubranarci","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25736789?s=80&v=4"}},{"before":"082973927faebe47f6cd66518b4c5eb7120d2cc4","after":"955868b5f0b51da87e0cd221c9dea10d5b289333","ref":"refs/heads/main","pushedAt":"2024-04-23T11:38:01.000Z","pushType":"pr_merge","commitsCount":10,"pusher":{"login":"kubranarci","name":"Kübra Narcı","path":"/kubranarci","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25736789?s=80&v=4"},"commit":{"message":"Merge pull request #33 from ghga-de/20-output-proper-vcf\n\n20 output proper vcf","shortMessageHtmlLink":"Merge pull request #33 from ghga-de/20-output-proper-vcf"}},{"before":"3b541ba1b057d3101db89ca428416a1cb9c0b67c","after":"acfd558ddefc71ad6bbd7049692e9df35115d703","ref":"refs/heads/20-output-proper-vcf","pushedAt":"2024-04-23T06:06:47.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"kubranarci","name":"Kübra Narcı","path":"/kubranarci","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25736789?s=80&v=4"},"commit":{"message":"vep mod changes and remove suffix ann","shortMessageHtmlLink":"vep mod changes and remove suffix ann"}},{"before":"2003b0b8d200dc9d1dfa0ca4eb5ff4885c69fdc6","after":"3b541ba1b057d3101db89ca428416a1cb9c0b67c","ref":"refs/heads/20-output-proper-vcf","pushedAt":"2024-04-05T14:03:47.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"kubranarci","name":"Kübra Narcı","path":"/kubranarci","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25736789?s=80&v=4"},"commit":{"message":"latest changes","shortMessageHtmlLink":"latest changes"}},{"before":"5a889c58785fde0141b5e694cc36c6581db8055f","after":"2003b0b8d200dc9d1dfa0ca4eb5ff4885c69fdc6","ref":"refs/heads/20-output-proper-vcf","pushedAt":"2024-04-03T15:41:59.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"kubranarci","name":"Kübra Narcı","path":"/kubranarci","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25736789?s=80&v=4"},"commit":{"message":"Delete snv_test_raw.vcf","shortMessageHtmlLink":"Delete snv_test_raw.vcf"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"Y3Vyc29yOnYyOpK7MjAyNC0wOS0xMVQxNDowNjo0NC4wMDAwMDBazwAAAASzSSpV","startCursor":"Y3Vyc29yOnYyOpK7MjAyNC0wOS0xMVQxNDowNjo0NC4wMDAwMDBazwAAAASzSSpV","endCursor":"Y3Vyc29yOnYyOpK7MjAyNC0wNC0wM1QxNTo0MTo1OS4wMDAwMDBazwAAAAQm1zTY"}},"title":"Activity · ghga-de/nf-snvcalling"}