{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":269360807,"defaultBranch":"master","name":"samba","ownerLogin":"ifremer-bioinformatics","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2020-06-04T13:01:05.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/34446356?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1669188584.160202","currentOid":""},"activityList":{"items":[{"before":"fa45604b94fdf15967d2bad4affca376cdca9979","after":"411e99576ba23725a50f1a809d2f27034e1a3665","ref":"refs/heads/master","pushedAt":"2023-06-28T06:44:25.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cnoel-sebimer","name":"CyrilNoel","path":"/cnoel-sebimer","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/64124730?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"63e690f8cb63b0af90ddd4d211db62fdc07ac95e","after":"fa45604b94fdf15967d2bad4affca376cdca9979","ref":"refs/heads/master","pushedAt":"2023-06-28T06:38:51.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"cnoel-sebimer","name":"CyrilNoel","path":"/cnoel-sebimer","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/64124730?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"b3a0045f08c0bb9e239bbf59dfbbc9944129aabe","after":"12419f115d767c286f4ec211bc936c459e8de48d","ref":"refs/heads/devel-samba-v4","pushedAt":"2023-06-20T05:39:00.209Z","pushType":"push","commitsCount":1,"pusher":{"login":"cnoel-sebimer","name":"CyrilNoel","path":"/cnoel-sebimer","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/64124730?s=80&v=4"},"commit":{"message":"Fix function for format data for pie graph","shortMessageHtmlLink":"Fix function for format data for pie graph"}},{"before":"79e496bc989601b7efb98dd57a92fc32cc750d97","after":"b3a0045f08c0bb9e239bbf59dfbbc9944129aabe","ref":"refs/heads/devel-samba-v4","pushedAt":"2023-06-20T05:30:36.429Z","pushType":"push","commitsCount":2,"pusher":{"login":"cnoel-sebimer","name":"CyrilNoel","path":"/cnoel-sebimer","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/64124730?s=80&v=4"},"commit":{"message":"Merge branch 'devel-samba-v4' of https://gitlab.ifremer.fr/bioinfo/SAMBA-nextflow into devel-samba-v4","shortMessageHtmlLink":"Merge branch 'devel-samba-v4' of <a href=\"https://gitlab.ifremer.fr/bioinfo/SAMBA-nextflow\" rel=\"nofollow\">https://gitlab.ifremer.fr/bioinfo/SA…</a>"}},{"before":"825a5cbeeb720a2c4953b9c70dc13b9b9314c364","after":"79e496bc989601b7efb98dd57a92fc32cc750d97","ref":"refs/heads/devel-samba-v4","pushedAt":"2023-06-16T07:53:26.844Z","pushType":"push","commitsCount":1,"pusher":{"login":"cnoel-sebimer","name":"CyrilNoel","path":"/cnoel-sebimer","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/64124730?s=80&v=4"},"commit":{"message":"Fix issue #92: Unmapped reads are tagged as Ambiguous","shortMessageHtmlLink":"Fix issue #92: Unmapped reads are tagged as Ambiguous"}},{"before":"abe486dd9a0edc6c0d70b79bd5675e8a88acf864","after":"825a5cbeeb720a2c4953b9c70dc13b9b9314c364","ref":"refs/heads/devel-samba-v4","pushedAt":"2023-06-15T16:33:56.012Z","pushType":"push","commitsCount":1,"pusher":{"login":"cnoel-sebimer","name":"CyrilNoel","path":"/cnoel-sebimer","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/64124730?s=80&v=4"},"commit":{"message":"Fix missing }","shortMessageHtmlLink":"Fix missing }"}},{"before":"765c05dc101887c3af4470de1e9c26abdc29a447","after":"abe486dd9a0edc6c0d70b79bd5675e8a88acf864","ref":"refs/heads/devel-samba-v4","pushedAt":"2023-06-07T09:03:03.560Z","pushType":"push","commitsCount":1,"pusher":{"login":"cnoel-sebimer","name":"CyrilNoel","path":"/cnoel-sebimer","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/64124730?s=80&v=4"},"commit":{"message":"Increase default walltime resource for PICRUSt2","shortMessageHtmlLink":"Increase default walltime resource for PICRUSt2"}},{"before":"a30daf98580d97a987aaff516e592d29f9cc4fb6","after":"765c05dc101887c3af4470de1e9c26abdc29a447","ref":"refs/heads/devel-samba-v4","pushedAt":"2023-06-07T08:55:36.465Z","pushType":"push","commitsCount":1,"pusher":{"login":"cnoel-sebimer","name":"CyrilNoel","path":"/cnoel-sebimer","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/64124730?s=80&v=4"},"commit":{"message":"Increase default walltime resource for DADA2","shortMessageHtmlLink":"Increase default walltime resource for DADA2"}},{"before":"bfb19cd2ab1cf76eab9645a06157ffec2d153ac6","after":"a30daf98580d97a987aaff516e592d29f9cc4fb6","ref":"refs/heads/devel-samba-v4","pushedAt":"2023-06-07T06:39:16.601Z","pushType":"push","commitsCount":4,"pusher":{"login":"cnoel-sebimer","name":"CyrilNoel","path":"/cnoel-sebimer","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/64124730?s=80&v=4"},"commit":{"message":"Remove top level MetaCyc prediction because unused","shortMessageHtmlLink":"Remove top level MetaCyc prediction because unused"}},{"before":"b675bd146c3ecbc3f0b7f00386806eefde37fe86","after":"bfb19cd2ab1cf76eab9645a06157ffec2d153ac6","ref":"refs/heads/devel-samba-v4","pushedAt":"2023-06-04T09:51:16.166Z","pushType":"push","commitsCount":1,"pusher":{"login":"cnoel-sebimer","name":"CyrilNoel","path":"/cnoel-sebimer","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/64124730?s=80&v=4"},"commit":{"message":"New process: Visualisation of intersect sets by UpSetR","shortMessageHtmlLink":"New process: Visualisation of intersect sets by UpSetR"}},{"before":"de4dd52a6afdd6a382b28eee19506633f4927c32","after":"b675bd146c3ecbc3f0b7f00386806eefde37fe86","ref":"refs/heads/devel-samba-v4","pushedAt":"2023-06-03T19:31:07.007Z","pushType":"push","commitsCount":2,"pusher":{"login":"cnoel-sebimer","name":"CyrilNoel","path":"/cnoel-sebimer","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/64124730?s=80&v=4"},"commit":{"message":"New process: Beta diversity for Nanopore data","shortMessageHtmlLink":"New process: Beta diversity for Nanopore data"}},{"before":"62b1721a391296b1e3ade31ca2146f74f64fb004","after":"de4dd52a6afdd6a382b28eee19506633f4927c32","ref":"refs/heads/devel-samba-v4","pushedAt":"2023-06-03T13:55:37.198Z","pushType":"push","commitsCount":2,"pusher":{"login":"cnoel-sebimer","name":"CyrilNoel","path":"/cnoel-sebimer","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/64124730?s=80&v=4"},"commit":{"message":"New process: Visualisation of intersect sets by UpSetR","shortMessageHtmlLink":"New process: Visualisation of intersect sets by UpSetR"}},{"before":"aa569123893be8466e523ee0de8859fc52817940","after":"62b1721a391296b1e3ade31ca2146f74f64fb004","ref":"refs/heads/devel-samba-v4","pushedAt":"2023-06-03T05:53:00.729Z","pushType":"push","commitsCount":1,"pusher":{"login":"cnoel-sebimer","name":"CyrilNoel","path":"/cnoel-sebimer","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/64124730?s=80&v=4"},"commit":{"message":"Remove top pathway filtering","shortMessageHtmlLink":"Remove top pathway filtering"}},{"before":"9316439add73a3b1016f0c2f093652efd2c6064b","after":"aa569123893be8466e523ee0de8859fc52817940","ref":"refs/heads/devel-samba-v4","pushedAt":"2023-06-03T05:11:41.047Z","pushType":"push","commitsCount":1,"pusher":{"login":"cnoel-sebimer","name":"CyrilNoel","path":"/cnoel-sebimer","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/64124730?s=80&v=4"},"commit":{"message":"Fix undesired deletion of the first row of the count table","shortMessageHtmlLink":"Fix undesired deletion of the first row of the count table"}},{"before":"a049286b712b722bf7c8f845f692711e6af9ce83","after":"9316439add73a3b1016f0c2f093652efd2c6064b","ref":"refs/heads/devel-samba-v4","pushedAt":"2023-06-03T04:48:51.629Z","pushType":"push","commitsCount":4,"pusher":{"login":"cnoel-sebimer","name":"CyrilNoel","path":"/cnoel-sebimer","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/64124730?s=80&v=4"},"commit":{"message":"Optimize publishdir structure for alpha and beta div analyses","shortMessageHtmlLink":"Optimize publishdir structure for alpha and beta div analyses"}},{"before":"789ee338c74b08f18e38ea098e585d259582132d","after":"a049286b712b722bf7c8f845f692711e6af9ce83","ref":"refs/heads/devel-samba-v4","pushedAt":"2023-06-02T06:50:23.238Z","pushType":"push","commitsCount":1,"pusher":{"login":"cnoel-sebimer","name":"CyrilNoel","path":"/cnoel-sebimer","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/64124730?s=80&v=4"},"commit":{"message":"Add pairwiseAdonis R package","shortMessageHtmlLink":"Add pairwiseAdonis R package"}},{"before":"9ee997eed0fc08ed1dfdab6667a27a539be24c98","after":"789ee338c74b08f18e38ea098e585d259582132d","ref":"refs/heads/devel-samba-v4","pushedAt":"2023-06-02T06:11:53.658Z","pushType":"push","commitsCount":1,"pusher":{"login":"cnoel-sebimer","name":"CyrilNoel","path":"/cnoel-sebimer","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/64124730?s=80&v=4"},"commit":{"message":"Add DESeq2 R package","shortMessageHtmlLink":"Add DESeq2 R package"}},{"before":"d7f44331009dc752d4f30c5be617e44d876d6941","after":"9ee997eed0fc08ed1dfdab6667a27a539be24c98","ref":"refs/heads/devel-samba-v4","pushedAt":"2023-05-31T07:31:31.957Z","pushType":"push","commitsCount":1,"pusher":{"login":"cnoel-sebimer","name":"CyrilNoel","path":"/cnoel-sebimer","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/64124730?s=80&v=4"},"commit":{"message":"Add tax filtering for NANOPORE data","shortMessageHtmlLink":"Add tax filtering for NANOPORE data"}},{"before":"e8341a4841376d4f8ea2fd2e712e546f168d6526","after":"d7f44331009dc752d4f30c5be617e44d876d6941","ref":"refs/heads/devel-samba-v4","pushedAt":"2023-05-30T08:07:36.376Z","pushType":"push","commitsCount":2,"pusher":{"login":"cnoel-sebimer","name":"CyrilNoel","path":"/cnoel-sebimer","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/64124730?s=80&v=4"},"commit":{"message":"Update R container from 4.2.2 to 4.2.3","shortMessageHtmlLink":"Update R container from 4.2.2 to 4.2.3"}},{"before":"dc04198eb120236dfa1674b7657bc94bff59b82f","after":"e8341a4841376d4f8ea2fd2e712e546f168d6526","ref":"refs/heads/devel-samba-v4","pushedAt":"2023-05-30T05:58:03.833Z","pushType":"push","commitsCount":2,"pusher":{"login":"cnoel-sebimer","name":"CyrilNoel","path":"/cnoel-sebimer","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/64124730?s=80&v=4"},"commit":{"message":"Add description for COG, PFAM and TIGRFAM predictions","shortMessageHtmlLink":"Add description for COG, PFAM and TIGRFAM predictions"}},{"before":"4553adbfe51452d620b5ae77606a7b06f6ddfd8b","after":"dc04198eb120236dfa1674b7657bc94bff59b82f","ref":"refs/heads/devel-samba-v4","pushedAt":"2023-05-27T15:41:34.258Z","pushType":"push","commitsCount":1,"pusher":{"login":"cnoel-sebimer","name":"CyrilNoel","path":"/cnoel-sebimer","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/64124730?s=80&v=4"},"commit":{"message":"Update PICRUSt2 and alpha div processes","shortMessageHtmlLink":"Update PICRUSt2 and alpha div processes"}},{"before":"b528ff10084c5c7b1a7aa4763c0289b8cf78e8f7","after":"4553adbfe51452d620b5ae77606a7b06f6ddfd8b","ref":"refs/heads/devel-samba-v4","pushedAt":"2023-05-27T15:34:09.114Z","pushType":"push","commitsCount":1,"pusher":{"login":"cnoel-sebimer","name":"CyrilNoel","path":"/cnoel-sebimer","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/64124730?s=80&v=4"},"commit":{"message":"Update PICRUSt2, alpha div and process ordering","shortMessageHtmlLink":"Update PICRUSt2, alpha div and process ordering"}},{"before":"68f58ff1317533e4870aaa0b37a34692cb1ffd6b","after":"b528ff10084c5c7b1a7aa4763c0289b8cf78e8f7","ref":"refs/heads/devel-samba-v4","pushedAt":"2023-05-27T13:22:51.847Z","pushType":"push","commitsCount":6,"pusher":{"login":"cnoel-sebimer","name":"CyrilNoel","path":"/cnoel-sebimer","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/64124730?s=80&v=4"},"commit":{"message":"Update PICRUSt2 process and plotting","shortMessageHtmlLink":"Update PICRUSt2 process and plotting"}},{"before":"f3061bab4a966dc6370dba67ea4689bddeed2551","after":"68f58ff1317533e4870aaa0b37a34692cb1ffd6b","ref":"refs/heads/devel-samba-v4","pushedAt":"2023-05-26T05:34:35.765Z","pushType":"push","commitsCount":1,"pusher":{"login":"cnoel-sebimer","name":"CyrilNoel","path":"/cnoel-sebimer","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/64124730?s=80&v=4"},"commit":{"message":"Removed unused v3 scripts in v4","shortMessageHtmlLink":"Removed unused v3 scripts in v4"}},{"before":"cf7ed6a316a861a9ad017d96b996b982b90b5a0c","after":"f3061bab4a966dc6370dba67ea4689bddeed2551","ref":"refs/heads/devel-samba-v4","pushedAt":"2023-05-24T18:46:53.628Z","pushType":"push","commitsCount":1,"pusher":{"login":"cnoel-sebimer","name":"CyrilNoel","path":"/cnoel-sebimer","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/64124730?s=80&v=4"},"commit":{"message":"Fix publishdir path for illumina alpha div process","shortMessageHtmlLink":"Fix publishdir path for illumina alpha div process"}},{"before":"17c0a615159fce96942828ae119387e6ba521b27","after":"cf7ed6a316a861a9ad017d96b996b982b90b5a0c","ref":"refs/heads/devel-samba-v4","pushedAt":"2023-05-24T12:14:04.845Z","pushType":"push","commitsCount":1,"pusher":{"login":"cnoel-sebimer","name":"CyrilNoel","path":"/cnoel-sebimer","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/64124730?s=80&v=4"},"commit":{"message":"Increase default resources","shortMessageHtmlLink":"Increase default resources"}},{"before":"9b1eeb4638aae5a68394e2a6d176ee9a164800f1","after":"17c0a615159fce96942828ae119387e6ba521b27","ref":"refs/heads/devel-samba-v4","pushedAt":"2023-05-23T10:02:42.457Z","pushType":"push","commitsCount":1,"pusher":{"login":"cnoel-sebimer","name":"CyrilNoel","path":"/cnoel-sebimer","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/64124730?s=80&v=4"},"commit":{"message":"New Illumina process: Alpha diversity analysis","shortMessageHtmlLink":"New Illumina process: Alpha diversity analysis"}},{"before":"b1a61a74e1e8d2a1eec11894b8c6d36802a4ef27","after":"9b1eeb4638aae5a68394e2a6d176ee9a164800f1","ref":"refs/heads/devel-samba-v4","pushedAt":"2023-05-23T09:39:06.962Z","pushType":"push","commitsCount":1,"pusher":{"login":"cnoel-sebimer","name":"CyrilNoel","path":"/cnoel-sebimer","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/64124730?s=80&v=4"},"commit":{"message":"Add specific resources for agglomerate_phyloseq process","shortMessageHtmlLink":"Add specific resources for agglomerate_phyloseq process"}},{"before":"a972fde479389ce8e3a574d477c4ca42949fe688","after":"b1a61a74e1e8d2a1eec11894b8c6d36802a4ef27","ref":"refs/heads/devel-samba-v4","pushedAt":"2023-05-20T19:55:13.133Z","pushType":"push","commitsCount":7,"pusher":{"login":"cnoel-sebimer","name":"CyrilNoel","path":"/cnoel-sebimer","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/64124730?s=80&v=4"},"commit":{"message":"Parallelization of phyloseq tax rank agglomeration","shortMessageHtmlLink":"Parallelization of phyloseq tax rank agglomeration"}},{"before":"03770999a91097077ade2a795c6fabc7c4fca670","after":"a972fde479389ce8e3a574d477c4ca42949fe688","ref":"refs/heads/devel-samba-v4","pushedAt":"2023-05-20T18:53:11.492Z","pushType":"push","commitsCount":1,"pusher":{"login":"cnoel-sebimer","name":"CyrilNoel","path":"/cnoel-sebimer","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/64124730?s=80&v=4"},"commit":{"message":"Add speedyseq R package","shortMessageHtmlLink":"Add speedyseq R package"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAADSn5KEwA","startCursor":null,"endCursor":null}},"title":"Activity · ifremer-bioinformatics/samba"}