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environment_candidate.yaml
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environment_candidate.yaml
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name: strainscan
channels:
- conda-forge
- r
- bioconda
- defaults
dependencies:
- _libgcc_mutex=0.1
- _openmp_mutex=4.5
- _r-mutex=1.0.1
- bidict=0.21.3
- binutils_impl_linux-64=2.36.1
- binutils_linux-64=2.36
- biopython=1.74
- bwidget=1.9.14
- bzip2=1.0.8
- ca-certificates=2021.10.8
- cairo=1.16.0
- certifi=2021.10.8
- click=8.0.3
- curl=7.71.1
- cycler=0.11.0
- fontconfig=2.13.1
- freetype=2.10.4
- fribidi=1.0.10
- gcc_impl_linux-64=7.5.0
- psutil=5.9.1
- gcc_linux-64=7.5.0
- gettext=0.19.8.1
- gfortran_impl_linux-64=7.5.0
- gfortran_linux-64=7.5.0
- glib=2.66.3
- graphite2=1.3.13
- gsl=2.6
- gxx_impl_linux-64=7.5.0
- gxx_linux-64=7.5.0
- harfbuzz=2.7.2
- icu=67.1
- importlib-metadata=4.10.0
- joblib=1.1.0
- jpeg=9d
- kernel-headers_linux-64=2.6.32
- kiwisolver=1.3.2
- krb5=1.17.2
- lcms2=2.12
- ld_impl_linux-64=2.36.1
- libblas=3.9.0
- libcblas=3.9.0
- libcurl=7.71.1
- libdeflate=1.0
- libedit=3.1.20191231
- libffi=3.2.1
- libgcc-ng=11.2.0
- libgfortran-ng=7.5.0
- libgfortran4=7.5.0
- libglib=2.66.3
- libgomp=11.2.0
- libiconv=1.16
- liblapack=3.9.0
- libopenblas=0.3.12
- libpng=1.6.37
- libssh2=1.10.0
- libstdcxx-ng=11.2.0
- libtiff=4.2.0
- libuuid=2.32.1
- libwebp-base=1.2.1
- libxcb=1.13
- libxml2=2.9.10
- libzlib=1.2.11
- lz4-c=1.9.3
- maf2synteny=1.2
- make=4.3
- matplotlib=3.3.2
- matplotlib-base=3.3.2
- mummer=3.23
- ncurses=6.2
- numpy=1.17.3
- olefile=0.46
- openjpeg=2.4.0
- openssl=1.1.1l
- pandas=1.0.1
- pango=1.42.4
- pcre=8.45
- pcre2=10.35
- perl=5.32.1
- perl-threaded=5.26.0
- pillow=8.2.0
- pip=21.3.1
- pixman=0.40.0
- pthread-stubs=0.4
- pyparsing=3.0.6
- pysam=0.15.3
- python=3.7.3
- python-dateutil=2.8.2
- python_abi=3.7
- pytz=2021.3
- r-ape=5.6
- r-assertthat=0.2.1
- r-backports=1.4.1
- r-base=4.0.2
- r-brio=1.1.3
- r-callr=3.7.0
- r-cli=3.1.0
- r-colorspace=2.0_2
- r-crayon=1.4.2
- r-desc=1.4.0
- r-diffobj=0.3.5
- r-digest=0.6.29
- r-ellipsis=0.3.2
- r-evaluate=0.14
- r-fansi=0.5.0
- r-farver=2.1.0
- r-ggplot2=3.3.3
- r-glue=1.6.0
- r-gtable=0.3.0
- r-isoband=0.2.5
- r-jsonlite=1.7.2
- r-labeling=0.4.2
- r-lattice=0.20_45
- r-lifecycle=1.0.1
- r-magrittr=2.0.1
- r-mass=7.3_54
- r-matrix=1.4_0
- r-mgcv=1.8_38
- r-munsell=0.5.0
- r-nlme=3.1_150
- r-pillar=1.6.4
- r-pkgconfig=2.0.3
- r-pkgload=1.2.4
- r-praise=1.0.0
- r-processx=3.5.2
- r-ps=1.6.0
- r-r6=2.5.1
- r-rcolorbrewer=1.1_2
- r-rcpp=1.0.7
- r-rematch2=2.1.2
- r-rlang=0.4.12
- r-rprojroot=2.0.2
- r-rstudioapi=0.13
- r-scales=1.1.1
- r-testthat=3.1.1
- r-tibble=3.1.6
- r-utf8=1.2.2
- r-vctrs=0.3.8
- r-viridislite=0.4.0
- r-waldo=0.3.1
- r-withr=2.4.3
- readline=8.1
- scikit-learn=0.23.1
- scipy=1.3.1
- sed=4.8
- setuptools=60.0.3
- sibeliaz=1.2.2
- six=1.16.0
- spoa=4.0.3
- sqlite=3.37.0
- strainest=1.2.4
- sysroot_linux-64=2.12
- tbb=2020.2
- threadpoolctl=3.0.0
- tk=8.6.11
- tktable=2.10
- tornado=6.1
- treelib=1.6.1
- twopaco=0.9.4
- typing_extensions=4.0.1
- wheel=0.37.0
- xorg-kbproto=1.0.7
- xorg-libice=1.0.10
- xorg-libsm=1.2.3
- xorg-libx11=1.7.2
- xorg-libxau=1.0.9
- xorg-libxdmcp=1.1.3
- xorg-libxext=1.3.4
- xorg-libxrender=0.9.10
- xorg-renderproto=0.11.1
- xorg-xextproto=7.3.0
- xorg-xproto=7.0.31
- xz=5.2.5
- zipp=3.6.0
- zlib=1.2.11
- zstd=1.5.0