{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":631382299,"defaultBranch":"Proton2","name":"BaSH_seq","ownerLogin":"mattgalbraith","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2023-04-22T21:08:11.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/46791232?v=4","public":true,"private":false,"isOrgOwned":false},"refInfo":{"name":"","listCacheKey":"v0:1689807716.0","currentOid":""},"activityList":{"items":[{"before":"d924aca628c5c40d24896365e262826d6e5377ca","after":"1fda40e851c6b204df2fe70b3cbf9da1e5310d13","ref":"refs/heads/Proton2","pushedAt":"2024-09-05T20:08:49.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mattgalbraith","name":null,"path":"/mattgalbraith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/46791232?s=80&v=4"},"commit":{"message":"Updating scripts location","shortMessageHtmlLink":"Updating scripts location"}},{"before":"4c66bf435554c1be6f1de6e9df52e939a03333f7","after":"d924aca628c5c40d24896365e262826d6e5377ca","ref":"refs/heads/Proton2","pushedAt":"2024-09-05T20:04:20.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mattgalbraith","name":null,"path":"/mattgalbraith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/46791232?s=80&v=4"},"commit":{"message":"Updating scripts location","shortMessageHtmlLink":"Updating scripts location"}},{"before":"e58ac1cc92b96f4f896eeff53da5b6b93b565d14","after":"4c66bf435554c1be6f1de6e9df52e939a03333f7","ref":"refs/heads/Proton2","pushedAt":"2024-08-23T22:30:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mattgalbraith","name":null,"path":"/mattgalbraith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/46791232?s=80&v=4"},"commit":{"message":"Fixing BAM file target in stage 10","shortMessageHtmlLink":"Fixing BAM file target in stage 10"}},{"before":"0a43e085a507652566f5232c6e834a47fb514d39","after":"e58ac1cc92b96f4f896eeff53da5b6b93b565d14","ref":"refs/heads/Proton2","pushedAt":"2024-05-07T19:29:29.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mattgalbraith","name":null,"path":"/mattgalbraith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/46791232?s=80&v=4"},"commit":{"message":"adding RES to output filenames","shortMessageHtmlLink":"adding RES to output filenames"}},{"before":"685258f1c17e947b443ceda9424d58779133e643","after":"0a43e085a507652566f5232c6e834a47fb514d39","ref":"refs/heads/Proton2","pushedAt":"2024-05-07T19:16:37.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mattgalbraith","name":null,"path":"/mattgalbraith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/46791232?s=80&v=4"},"commit":{"message":"adding RES to output filenames","shortMessageHtmlLink":"adding RES to output filenames"}},{"before":"2c7e0f3d22a1b67e4ef65c2e126c11398b79ff00","after":"685258f1c17e947b443ceda9424d58779133e643","ref":"refs/heads/Proton2","pushedAt":"2024-05-07T19:11:49.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mattgalbraith","name":null,"path":"/mattgalbraith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/46791232?s=80&v=4"},"commit":{"message":"adding switch for -avg argument to makeUCSCfile","shortMessageHtmlLink":"adding switch for -avg argument to makeUCSCfile"}},{"before":"b84785682651c07b5e8bcde61b74a05f0dba01dc","after":"2c7e0f3d22a1b67e4ef65c2e126c11398b79ff00","ref":"refs/heads/Proton2","pushedAt":"2024-05-03T05:43:04.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mattgalbraith","name":null,"path":"/mattgalbraith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/46791232?s=80&v=4"},"commit":{"message":"Updating pipeline script for stage 12 on Proton2","shortMessageHtmlLink":"Updating pipeline script for stage 12 on Proton2"}},{"before":"7f18d1237ea5ef571336ee30617dfa5b8a991952","after":"b84785682651c07b5e8bcde61b74a05f0dba01dc","ref":"refs/heads/Proton2","pushedAt":"2024-05-03T05:37:01.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mattgalbraith","name":null,"path":"/mattgalbraith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/46791232?s=80&v=4"},"commit":{"message":"Updating stage 12 to run with apptainer on Proton2","shortMessageHtmlLink":"Updating stage 12 to run with apptainer on Proton2"}},{"before":"ce27348f24d577bef0f87fea55e48cdc52c9b821","after":"7f18d1237ea5ef571336ee30617dfa5b8a991952","ref":"refs/heads/Proton2","pushedAt":"2024-05-03T05:35:13.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mattgalbraith","name":null,"path":"/mattgalbraith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/46791232?s=80&v=4"},"commit":{"message":"Updating stage 12 to run with apptainer on Proton2","shortMessageHtmlLink":"Updating stage 12 to run with apptainer on Proton2"}},{"before":"dd1643ca152a09f4075a0e40f247e49f200bf240","after":"ce27348f24d577bef0f87fea55e48cdc52c9b821","ref":"refs/heads/Proton2","pushedAt":"2024-05-03T05:33:50.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mattgalbraith","name":null,"path":"/mattgalbraith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/46791232?s=80&v=4"},"commit":{"message":"Updating stage 11 to run with apptainer on Proton2","shortMessageHtmlLink":"Updating stage 11 to run with apptainer on Proton2"}},{"before":"418b50aa6a60c98d60cc8c06b0078dd6b993e1fe","after":"dd1643ca152a09f4075a0e40f247e49f200bf240","ref":"refs/heads/Proton2","pushedAt":"2024-05-03T05:17:00.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"mattgalbraith","name":null,"path":"/mattgalbraith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/46791232?s=80&v=4"},"commit":{"message":"Updating pipeline script for Proton2","shortMessageHtmlLink":"Updating pipeline script for Proton2"}},{"before":"8c29c7d148b66a7f7fe2f9a04df37f7d5965975c","after":"418b50aa6a60c98d60cc8c06b0078dd6b993e1fe","ref":"refs/heads/Proton2","pushedAt":"2024-05-03T05:05:29.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mattgalbraith","name":null,"path":"/mattgalbraith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/46791232?s=80&v=4"},"commit":{"message":"Updating stage 11 to run with apptainer on Proton2","shortMessageHtmlLink":"Updating stage 11 to run with apptainer on Proton2"}},{"before":"25e6d80d2655722f59eed4b467789f902bc2dc1c","after":"8c29c7d148b66a7f7fe2f9a04df37f7d5965975c","ref":"refs/heads/Proton2","pushedAt":"2024-05-03T05:02:33.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mattgalbraith","name":null,"path":"/mattgalbraith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/46791232?s=80&v=4"},"commit":{"message":"Updating stage 11 to run with apptainer on Proton2","shortMessageHtmlLink":"Updating stage 11 to run with apptainer on Proton2"}},{"before":"21abb1796431c9706f242a543886e12da2466511","after":"25e6d80d2655722f59eed4b467789f902bc2dc1c","ref":"refs/heads/Proton2","pushedAt":"2024-05-03T04:12:23.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mattgalbraith","name":null,"path":"/mattgalbraith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/46791232?s=80&v=4"},"commit":{"message":"Updating stage 11 to run with apptainer on Proton2","shortMessageHtmlLink":"Updating stage 11 to run with apptainer on Proton2"}},{"before":"a4608079644937f920bd910b129e651c4c8f4f00","after":"21abb1796431c9706f242a543886e12da2466511","ref":"refs/heads/Proton2","pushedAt":"2024-05-03T04:08:44.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mattgalbraith","name":null,"path":"/mattgalbraith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/46791232?s=80&v=4"},"commit":{"message":"Updating stage 11 to run with apptainer on Proton2","shortMessageHtmlLink":"Updating stage 11 to run with apptainer on Proton2"}},{"before":"eb379ec4fa3246f8bd4321fd6172c803ad11dadb","after":"a4608079644937f920bd910b129e651c4c8f4f00","ref":"refs/heads/Proton2","pushedAt":"2024-05-03T03:44:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mattgalbraith","name":null,"path":"/mattgalbraith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/46791232?s=80&v=4"},"commit":{"message":"Updating stage 12 to run with apptainer on Proton2","shortMessageHtmlLink":"Updating stage 12 to run with apptainer on Proton2"}},{"before":"c6293e0a2d8e78d996eb4693445c5d2f2fe29510","after":"eb379ec4fa3246f8bd4321fd6172c803ad11dadb","ref":"refs/heads/Proton2","pushedAt":"2024-05-03T01:09:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mattgalbraith","name":null,"path":"/mattgalbraith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/46791232?s=80&v=4"},"commit":{"message":"Updating stage 11 to run with apptainer on Proton2","shortMessageHtmlLink":"Updating stage 11 to run with apptainer on Proton2"}},{"before":"d2fcde522ae965fb38d70dfa264ad322629afa9e","after":"c6293e0a2d8e78d996eb4693445c5d2f2fe29510","ref":"refs/heads/Proton2","pushedAt":"2024-05-03T01:07:11.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mattgalbraith","name":null,"path":"/mattgalbraith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/46791232?s=80&v=4"},"commit":{"message":"Adjusting mem-per-cpu reqs","shortMessageHtmlLink":"Adjusting mem-per-cpu reqs"}},{"before":"c51b1025aa31730f22c7cea490a12e8979990345","after":"d2fcde522ae965fb38d70dfa264ad322629afa9e","ref":"refs/heads/Proton2","pushedAt":"2024-05-03T00:42:50.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mattgalbraith","name":null,"path":"/mattgalbraith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/46791232?s=80&v=4"},"commit":{"message":"Adjusting mem-per-cpu reqs","shortMessageHtmlLink":"Adjusting mem-per-cpu reqs"}},{"before":"774af9faa20e2fa379589897a6cafdc77507c00d","after":"c51b1025aa31730f22c7cea490a12e8979990345","ref":"refs/heads/Proton2","pushedAt":"2024-05-02T20:29:47.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mattgalbraith","name":null,"path":"/mattgalbraith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/46791232?s=80&v=4"},"commit":{"message":"Updating stage 4 script for Proton2 / containers","shortMessageHtmlLink":"Updating stage 4 script for Proton2 / containers"}},{"before":"57ead4032776390ae2dd271000cc47e08235f7b7","after":"774af9faa20e2fa379589897a6cafdc77507c00d","ref":"refs/heads/Proton2","pushedAt":"2024-05-02T20:29:12.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mattgalbraith","name":null,"path":"/mattgalbraith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/46791232?s=80&v=4"},"commit":{"message":"Updating pipeline script for Proton2","shortMessageHtmlLink":"Updating pipeline script for Proton2"}},{"before":"a1c4171108338169cb5479c7ed1c4f7ef1ad37c8","after":"57ead4032776390ae2dd271000cc47e08235f7b7","ref":"refs/heads/Proton2","pushedAt":"2024-05-01T22:09:31.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mattgalbraith","name":null,"path":"/mattgalbraith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/46791232?s=80&v=4"},"commit":{"message":"Updating pipeline script for Proton2","shortMessageHtmlLink":"Updating pipeline script for Proton2"}},{"before":"1b54bbcb6f65e1690a0d5af64e02c5ca2bbca348","after":"a1c4171108338169cb5479c7ed1c4f7ef1ad37c8","ref":"refs/heads/Proton2","pushedAt":"2024-05-01T22:03:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mattgalbraith","name":null,"path":"/mattgalbraith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/46791232?s=80&v=4"},"commit":{"message":"Updating stage 4 script for Proton2 / containers","shortMessageHtmlLink":"Updating stage 4 script for Proton2 / containers"}},{"before":"88882a8f675fa47a2fd8a813aa1a0431343742c1","after":"1b54bbcb6f65e1690a0d5af64e02c5ca2bbca348","ref":"refs/heads/Proton2","pushedAt":"2024-05-01T22:02:32.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mattgalbraith","name":null,"path":"/mattgalbraith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/46791232?s=80&v=4"},"commit":{"message":"Updating pipeline script for Proton2","shortMessageHtmlLink":"Updating pipeline script for Proton2"}},{"before":"a512d7dd859c3a186ff963095d4988c1a2afaa07","after":"88882a8f675fa47a2fd8a813aa1a0431343742c1","ref":"refs/heads/Proton2","pushedAt":"2024-04-24T21:47:25.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mattgalbraith","name":null,"path":"/mattgalbraith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/46791232?s=80&v=4"},"commit":{"message":"Updating sbatch node/task/cpu/mem parameters for each stage","shortMessageHtmlLink":"Updating sbatch node/task/cpu/mem parameters for each stage"}},{"before":"e7ae7d7e3e505dd865a11630fce59f0a2bcca5a0","after":"a512d7dd859c3a186ff963095d4988c1a2afaa07","ref":"refs/heads/Proton2","pushedAt":"2024-04-24T19:39:54.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mattgalbraith","name":null,"path":"/mattgalbraith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/46791232?s=80&v=4"},"commit":{"message":"Updating stageScripts/9_SE_ALIGNMENT_METRICS.sh to use containers","shortMessageHtmlLink":"Updating stageScripts/9_SE_ALIGNMENT_METRICS.sh to use containers"}},{"before":"29a43ffa5197fc5bb67de59be209d0dee6e57bcb","after":"e7ae7d7e3e505dd865a11630fce59f0a2bcca5a0","ref":"refs/heads/Proton2","pushedAt":"2024-04-24T15:58:37.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mattgalbraith","name":null,"path":"/mattgalbraith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/46791232?s=80&v=4"},"commit":{"message":"Removing REF_FILE arg","shortMessageHtmlLink":"Removing REF_FILE arg"}},{"before":"fe75ceaf957c04e0d154728142c66a80aaf1e87e","after":"29a43ffa5197fc5bb67de59be209d0dee6e57bcb","ref":"refs/heads/Proton2","pushedAt":"2024-04-24T15:56:10.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mattgalbraith","name":null,"path":"/mattgalbraith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/46791232?s=80&v=4"},"commit":{"message":"Removing REF_FILE arg","shortMessageHtmlLink":"Removing REF_FILE arg"}},{"before":"de7668827de3bf47824d4ebfd2d7074dac7af89a","after":"fe75ceaf957c04e0d154728142c66a80aaf1e87e","ref":"refs/heads/Proton2","pushedAt":"2023-11-11T06:54:07.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mattgalbraith","name":null,"path":"/mattgalbraith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/46791232?s=80&v=4"},"commit":{"message":"Updated RNA stage 11 to run with apptainer on Proton2","shortMessageHtmlLink":"Updated RNA stage 11 to run with apptainer on Proton2"}},{"before":"18af878ba00e29afdff04a1ecc81f61b9837862f","after":"de7668827de3bf47824d4ebfd2d7074dac7af89a","ref":"refs/heads/Proton2","pushedAt":"2023-11-11T06:09:12.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mattgalbraith","name":null,"path":"/mattgalbraith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/46791232?s=80&v=4"},"commit":{"message":"Updated stage 10 to run with apptainer on Proton2","shortMessageHtmlLink":"Updated stage 10 to run with apptainer on Proton2"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"Y3Vyc29yOnYyOpK7MjAyNC0wOS0wNVQyMDowODo0OS4wMDAwMDBazwAAAASuQaW3","startCursor":"Y3Vyc29yOnYyOpK7MjAyNC0wOS0wNVQyMDowODo0OS4wMDAwMDBazwAAAASuQaW3","endCursor":"Y3Vyc29yOnYyOpK7MjAyMy0xMS0xMVQwNjowOToxMi4wMDAwMDBazwAAAAOssNX1"}},"title":"Activity ยท mattgalbraith/BaSH_seq"}