{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":473240953,"defaultBranch":"main","name":"postprocessing_variant_calls","ownerLogin":"msk-access","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2022-03-23T15:09:32.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/51964568?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1725633124.0","currentOid":""},"activityList":{"items":[{"before":"b16441a5e25adf81fc6404fe5a0fbf16f9522d51","after":"6b21bd6feb91bbf5ca36bd4873b3bce92bdddd44","ref":"refs/heads/docs","pushedAt":"2024-09-06T14:31:54.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"github-actions[bot]","name":null,"path":"/apps/github-actions","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/15368?s=80&v=4"},"commit":{"message":"add doc for cli","shortMessageHtmlLink":"add doc for cli"}},{"before":"61c1be299f6713b3ec8d5988d1bbd6a14b7a0698","after":"55376fb9e264333482cc52ce9e59a2526e36a109","ref":"refs/heads/main","pushedAt":"2024-09-06T14:31:52.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"github-actions[bot]","name":null,"path":"/apps/github-actions","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/15368?s=80&v=4"},"commit":{"message":"add doc for cli","shortMessageHtmlLink":"add doc for cli"}},{"before":"bcff620d26ae18ee6204d8e52dda701114c686ee","after":"61c1be299f6713b3ec8d5988d1bbd6a14b7a0698","ref":"refs/heads/main","pushedAt":"2024-09-06T14:31:22.000Z","pushType":"pr_merge","commitsCount":7,"pusher":{"login":"buehlere","name":"Eric Buehler ","path":"/buehlere","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/31450790?s=80&v=4"},"commit":{"message":"Merge pull request #46 from msk-access/release/0.2.5\n\nRelease/0.2.5","shortMessageHtmlLink":"Merge pull request #46 from msk-access/release/0.2.5"}},{"before":null,"after":"009ff78a61a87a5d64b90bb8c826f89b1e6a6276","ref":"refs/heads/release/0.2.5","pushedAt":"2024-09-06T14:30:46.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"buehlere","name":"Eric Buehler ","path":"/buehlere","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/31450790?s=80&v=4"},"commit":{"message":"Merge pull request #44 from msk-access/mutect_filter_fix\n\nMutect2 filtering command","shortMessageHtmlLink":"Merge pull request #44 from msk-access/mutect_filter_fix"}},{"before":"84aaab13611102e70bdcaec36358173c9f470846","after":null,"ref":"refs/tags/0.2.4","pushedAt":"2024-09-06T14:25:54.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"buehlere","name":"Eric Buehler ","path":"/buehlere","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/31450790?s=80&v=4"}},{"before":"0a214e9f48329ae41464f323ef1612b1111975e9","after":"bcff620d26ae18ee6204d8e52dda701114c686ee","ref":"refs/heads/main","pushedAt":"2024-09-06T14:20:50.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"buehlere","name":"Eric Buehler ","path":"/buehlere","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/31450790?s=80&v=4"},"commit":{"message":"Merge pull request #45 from msk-access/release/0.2.4\n\nMerge tag '0.2.4' into develop","shortMessageHtmlLink":"Merge pull request #45 from msk-access/release/0.2.4"}},{"before":null,"after":"cfbbcdf046cd1e95817afaaef0e2590d9cf29e9c","ref":"refs/heads/release/0.2.4","pushedAt":"2024-09-06T14:17:52.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"buehlere","name":"Eric Buehler ","path":"/buehlere","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/31450790?s=80&v=4"},"commit":{"message":"Merge tag '0.2.4' into develop\n\nadding methods for nucleovar","shortMessageHtmlLink":"Merge tag '0.2.4' into develop"}},{"before":"cfbbcdf046cd1e95817afaaef0e2590d9cf29e9c","after":"009ff78a61a87a5d64b90bb8c826f89b1e6a6276","ref":"refs/heads/develop","pushedAt":"2024-09-06T14:16:34.000Z","pushType":"pr_merge","commitsCount":6,"pusher":{"login":"rnaidu","name":"Rashmi Naidu ","path":"/rnaidu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/152219469?s=80&v=4"},"commit":{"message":"Merge pull request #44 from msk-access/mutect_filter_fix\n\nMutect2 filtering command","shortMessageHtmlLink":"Merge pull request #44 from msk-access/mutect_filter_fix"}},{"before":"5502afb81867d24e65b23f3ede24415bb97981d5","after":"141c9a37368f6e2aeaa4ee00d764816f4768e23c","ref":"refs/heads/mutect_filter_fix","pushedAt":"2024-09-05T20:21:03.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rnaidu","name":"Rashmi Naidu ","path":"/rnaidu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/152219469?s=80&v=4"},"commit":{"message":"reformatted files for lint checks and added test in for mutect2 filter command","shortMessageHtmlLink":"reformatted files for lint checks and added test in for mutect2 filte…"}},{"before":"95bc7a3b7750f3ec3603624e32262ebd030f98fb","after":"5502afb81867d24e65b23f3ede24415bb97981d5","ref":"refs/heads/mutect_filter_fix","pushedAt":"2024-09-05T20:11:11.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rnaidu","name":"Rashmi Naidu ","path":"/rnaidu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/152219469?s=80&v=4"},"commit":{"message":"tested commits this morning on nucleovar","shortMessageHtmlLink":"tested commits this morning on nucleovar"}},{"before":"eae6c3ed3404ca6776b532b5410ffd98d590dd67","after":"95bc7a3b7750f3ec3603624e32262ebd030f98fb","ref":"refs/heads/mutect_filter_fix","pushedAt":"2024-09-05T16:49:27.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rnaidu","name":"Rashmi Naidu ","path":"/rnaidu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/152219469?s=80&v=4"},"commit":{"message":"reformatted edited files to pass linting checks","shortMessageHtmlLink":"reformatted edited files to pass linting checks"}},{"before":"eb4c6b01f39b13a39cfbfec62af1627d6672aedc","after":"eae6c3ed3404ca6776b532b5410ffd98d590dd67","ref":"refs/heads/mutect_filter_fix","pushedAt":"2024-09-05T16:47:18.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rnaidu","name":"Rashmi Naidu ","path":"/rnaidu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/152219469?s=80&v=4"},"commit":{"message":"added mutect2 filtering command and functionality in postprocessing","shortMessageHtmlLink":"added mutect2 filtering command and functionality in postprocessing"}},{"before":null,"after":"eb4c6b01f39b13a39cfbfec62af1627d6672aedc","ref":"refs/heads/mutect_filter_fix","pushedAt":"2024-08-16T18:35:02.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"rnaidu","name":"Rashmi Naidu ","path":"/rnaidu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/152219469?s=80&v=4"},"commit":{"message":"changed mutect1 filter so sample order is rearranged in the correct way","shortMessageHtmlLink":"changed mutect1 filter so sample order is rearranged in the correct way"}},{"before":"80b09f9052cc4f4af9c083fcedee7da21d4a3965","after":"b16441a5e25adf81fc6404fe5a0fbf16f9522d51","ref":"refs/heads/docs","pushedAt":"2024-08-15T18:16:40.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"github-actions[bot]","name":null,"path":"/apps/github-actions","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/15368?s=80&v=4"},"commit":{"message":"add doc for cli","shortMessageHtmlLink":"add doc for cli"}},{"before":"f5db4dab09770f40bf17b26347b9489915944f4b","after":"0a214e9f48329ae41464f323ef1612b1111975e9","ref":"refs/heads/main","pushedAt":"2024-08-15T18:16:08.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"buehlere","name":"Eric Buehler ","path":"/buehlere","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/31450790?s=80&v=4"},"commit":{"message":"Update document_package.yml","shortMessageHtmlLink":"Update document_package.yml"}},{"before":"a4bd4a138a227f3de144ad194621f7cacc247065","after":"80b09f9052cc4f4af9c083fcedee7da21d4a3965","ref":"refs/heads/docs","pushedAt":"2024-08-15T18:12:14.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"buehlere","name":"Eric Buehler ","path":"/buehlere","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/31450790?s=80&v=4"},"commit":{"message":"Delete cli.md","shortMessageHtmlLink":"Delete cli.md"}},{"before":"f7e60ae21c08d491574dc555b526838c20d7c33f","after":null,"ref":"refs/tags/0.2.4","pushedAt":"2024-08-15T18:00:52.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"buehlere","name":"Eric Buehler ","path":"/buehlere","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/31450790?s=80&v=4"}},{"before":"fe96b75c130d7a913f6ca7167567646e4d1ebf2d","after":"a4bd4a138a227f3de144ad194621f7cacc247065","ref":"refs/heads/docs","pushedAt":"2024-08-15T18:00:25.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"github-actions[bot]","name":null,"path":"/apps/github-actions","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/15368?s=80&v=4"},"commit":{"message":"add doc for cli","shortMessageHtmlLink":"add doc for cli"}},{"before":"e60c963fb48c0b6243ad92ead8b95a98f6946825","after":"f5db4dab09770f40bf17b26347b9489915944f4b","ref":"refs/heads/main","pushedAt":"2024-08-15T18:00:24.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"github-actions[bot]","name":null,"path":"/apps/github-actions","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/15368?s=80&v=4"},"commit":{"message":"add doc for cli","shortMessageHtmlLink":"add doc for cli"}},{"before":"ab3b3cddb33be92c6ea7c12966b8b7a042b7bb60","after":"e60c963fb48c0b6243ad92ead8b95a98f6946825","ref":"refs/heads/main","pushedAt":"2024-08-15T17:59:47.000Z","pushType":"push","commitsCount":68,"pusher":{"login":"buehlere","name":"Eric Buehler ","path":"/buehlere","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/31450790?s=80&v=4"},"commit":{"message":"Merge branch 'release/0.2.4'","shortMessageHtmlLink":"Merge branch 'release/0.2.4'"}},{"before":"fdeb7c6a854ba441c89cce833b89372adb5f6af8","after":"cfbbcdf046cd1e95817afaaef0e2590d9cf29e9c","ref":"refs/heads/develop","pushedAt":"2024-08-15T17:59:45.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"buehlere","name":"Eric Buehler ","path":"/buehlere","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/31450790?s=80&v=4"},"commit":{"message":"Merge tag '0.2.4' into develop\n\nadding methods for nucleovar","shortMessageHtmlLink":"Merge tag '0.2.4' into develop"}},{"before":"40b264166b8d96d1b34c386c8ac6339c8bed1a69","after":null,"ref":"refs/heads/feature/access_filters","pushedAt":"2024-08-15T16:18:38.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"rnaidu","name":"Rashmi Naidu ","path":"/rnaidu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/152219469?s=80&v=4"}},{"before":"4e729e15364b58cec755bb2a6ded3a87089d5823","after":"fdeb7c6a854ba441c89cce833b89372adb5f6af8","ref":"refs/heads/develop","pushedAt":"2024-08-15T16:18:18.000Z","pushType":"pr_merge","commitsCount":66,"pusher":{"login":"rnaidu","name":"Rashmi Naidu ","path":"/rnaidu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/152219469?s=80&v=4"},"commit":{"message":"Merge pull request #41 from msk-access/feature/access_filters\n\nAccess Filters + Tag by Variant Classification pv commands","shortMessageHtmlLink":"Merge pull request #41 from msk-access/feature/access_filters"}},{"before":"5b7b97e46d9d7956e1a18d148891aaef7ebd1850","after":"40b264166b8d96d1b34c386c8ac6339c8bed1a69","ref":"refs/heads/feature/access_filters","pushedAt":"2024-08-15T15:53:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rnaidu","name":"Rashmi Naidu ","path":"/rnaidu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/152219469?s=80&v=4"},"commit":{"message":"removed --help test in maf tag that was incomplete","shortMessageHtmlLink":"removed --help test in maf tag that was incomplete"}},{"before":"d6a81772d2ac8b0ada56ce64744a9f57c8949911","after":"5b7b97e46d9d7956e1a18d148891aaef7ebd1850","ref":"refs/heads/feature/access_filters","pushedAt":"2024-08-15T15:52:04.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rnaidu","name":"Rashmi Naidu ","path":"/rnaidu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/152219469?s=80&v=4"},"commit":{"message":"fixing last changes, removed out_file.md and workflow.txt. Also added --help tests for access_filters and access_remove_variants","shortMessageHtmlLink":"fixing last changes, removed out_file.md and workflow.txt. Also added…"}},{"before":"01a2d80e91c7e5e9fc66bfb653c47520460e537e","after":"d6a81772d2ac8b0ada56ce64744a9f57c8949911","ref":"refs/heads/feature/access_filters","pushedAt":"2024-08-08T17:28:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rnaidu","name":"Rashmi Naidu ","path":"/rnaidu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/152219469?s=80&v=4"},"commit":{"message":"resolving maf tests for github actions check","shortMessageHtmlLink":"resolving maf tests for github actions check"}},{"before":"6b8be4e1efcf75062387312bc8c031e3091e05e9","after":"01a2d80e91c7e5e9fc66bfb653c47520460e537e","ref":"refs/heads/feature/access_filters","pushedAt":"2024-08-08T16:01:20.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rnaidu","name":"Rashmi Naidu ","path":"/rnaidu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/152219469?s=80&v=4"},"commit":{"message":"created testing for newly created tag by variant classification command","shortMessageHtmlLink":"created testing for newly created tag by variant classification command"}},{"before":"22af5c4bf4f3c3009ee59e569b274b00e1a52eec","after":"6b8be4e1efcf75062387312bc8c031e3091e05e9","ref":"refs/heads/feature/access_filters","pushedAt":"2024-08-08T15:58:10.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rnaidu","name":"Rashmi Naidu ","path":"/rnaidu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/152219469?s=80&v=4"},"commit":{"message":"added MAF extension for output annotated exonic variants file","shortMessageHtmlLink":"added MAF extension for output annotated exonic variants file"}},{"before":"a0b7d78f4402b8a75aca73c8410e2e8afe6dd2a5","after":"22af5c4bf4f3c3009ee59e569b274b00e1a52eec","ref":"refs/heads/feature/access_filters","pushedAt":"2024-08-08T15:28:40.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rnaidu","name":"Rashmi Naidu ","path":"/rnaidu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/152219469?s=80&v=4"},"commit":{"message":"added functionality for tag by variant classification and linted files","shortMessageHtmlLink":"added functionality for tag by variant classification and linted files"}},{"before":"8a7012374f3565360c6c9e8504dc59b43cf920de","after":"a0b7d78f4402b8a75aca73c8410e2e8afe6dd2a5","ref":"refs/heads/feature/access_filters","pushedAt":"2024-07-30T19:18:11.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rnaidu","name":"Rashmi Naidu ","path":"/rnaidu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/152219469?s=80&v=4"},"commit":{"message":"integrated formatting of filtered MAF portion of maf2tsv.py in access_filters","shortMessageHtmlLink":"integrated formatting of filtered MAF portion of maf2tsv.py in access…"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAErwVYhAA","startCursor":null,"endCursor":null}},"title":"Activity · msk-access/postprocessing_variant_calls"}