{"payload":{"pageCount":4,"repositories":[{"type":"Public","name":"hatch","owner":"SBU-BMI","isFork":true,"description":"","allTopics":[],"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":2,"license":"GNU General Public License v2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-29T12:53:11.963Z"}},{"type":"Public","name":"PathDB","owner":"SBU-BMI","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"PHP","color":"#4F5D95"},"pullRequestCount":11,"issueCount":1,"starsCount":2,"forksCount":5,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-24T18:00:15.985Z"}},{"type":"Public","name":"wsinfer","owner":"SBU-BMI","isFork":false,"description":"🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images","allTopics":["deep-learning","pytorch","classification","pathology","whole-slide-imaging"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":12,"starsCount":56,"forksCount":9,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-11T03:44:46.242Z"}},{"type":"Public","name":"wsinfer-zoo","owner":"SBU-BMI","isFork":false,"description":"Model zoo for WSInfer","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":1,"forksCount":0,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-09T17:51:18.454Z"}},{"type":"Public","name":"wsinfer-mil","owner":"SBU-BMI","isFork":false,"description":"CLI tool to run specimen-level inference on whole slide images","allTopics":["digital-pathology","whole-slide-imaging","multiple-instance-learning","histopathology"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":0,"forksCount":0,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-07T15:41:26.275Z"}},{"type":"Public","name":"quip_distro","owner":"SBU-BMI","isFork":false,"description":"","allTopics":["visualization","database","analysis","docker-image","slide-tissue-images"],"primaryLanguage":{"name":"JavaScript","color":"#f1e05a"},"pullRequestCount":3,"issueCount":6,"starsCount":30,"forksCount":16,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-02T17:12:26.161Z"}},{"type":"Public","name":"MappingOHDSI2HDF5","owner":"SBU-BMI","isFork":false,"description":"Build JSON mappings for mapping OHDSI tables to HDF5","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":6,"forksCount":3,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-10-23T21:40:05.354Z"}},{"type":"Public","name":"region-templates","owner":"SBU-BMI","isFork":false,"description":"Region Templates development ","allTopics":[],"primaryLanguage":{"name":"C++","color":"#f34b7d"},"pullRequestCount":1,"issueCount":0,"starsCount":4,"forksCount":5,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-10-11T21:21:20.789Z"}},{"type":"Public","name":"til_align","owner":"SBU-BMI","isFork":false,"description":"TIL Alignment ","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":1,"starsCount":0,"forksCount":1,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-08-06T19:48:06.077Z"}},{"type":"Public","name":"champkit","owner":"SBU-BMI","isFork":false,"description":"Benchmarking toolkit for patch-based histopathology image classification.","allTopics":["benchmarking","benchmark","deep-learning","pytorch","image-classification","histopathology"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":3,"starsCount":37,"forksCount":4,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-06-02T15:13:32.949Z"}},{"type":"Public","name":"uploadHeatmaps","owner":"SBU-BMI","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":1,"starsCount":0,"forksCount":4,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-05-25T19:12:19.210Z"}},{"type":"Public","name":"SegmentationLoader","owner":"SBU-BMI","isFork":false,"description":"Load WSI segmentations to mongodb instance","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":0,"forksCount":0,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-05-25T18:13:36.606Z"}},{"type":"Public","name":"tumor-til-survival-analysis","owner":"SBU-BMI","isFork":false,"description":"Scripts to run analysis of tumor/TILs.","allTopics":[],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":6,"starsCount":2,"forksCount":0,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-05-22T19:34:15.764Z"}},{"type":"Public","name":"quip_cnn_segmentation","owner":"SBU-BMI","isFork":false,"description":"CNN based segmentation codes","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":3,"issueCount":4,"starsCount":47,"forksCount":18,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-01-19T00:04:55.915Z"}},{"type":"Public","name":"QuIPImageFetch","owner":"SBU-BMI","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-01-12T21:14:07.491Z"}},{"type":"Public","name":"ImageLoader","owner":"SBU-BMI","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Dockerfile","color":"#384d54"},"pullRequestCount":0,"issueCount":1,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-09-20T20:54:19.041Z"}},{"type":"Public","name":"quip_paad_cancer_detection","owner":"SBU-BMI","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":2,"issueCount":2,"starsCount":8,"forksCount":8,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-08-08T15:04:09.038Z"}},{"type":"Public","name":"quip_prad_cancer_detection","owner":"SBU-BMI","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":3,"forksCount":1,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-08-08T15:00:48.211Z"}},{"type":"Public","name":"quip_lung_cancer_detection","owner":"SBU-BMI","isFork":true,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":3,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-08-08T14:57:15.155Z"}},{"type":"Public","name":"quip_cancer_segmentation","owner":"SBU-BMI","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":15,"forksCount":4,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-08-08T14:51:42.836Z"}},{"type":"Public","name":"quip_classification","owner":"SBU-BMI","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":3,"starsCount":5,"forksCount":11,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-07-17T17:02:30.238Z"}},{"type":"Public","name":"deep_survival_analysis","owner":"SBU-BMI","isFork":false,"description":"Survival analysis with deep learning ","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":3,"forksCount":1,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-05-18T18:33:50.331Z"}},{"type":"Public","name":"generate_heatmap_pannels","owner":"SBU-BMI","isFork":true,"description":"","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":2,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-05-03T20:57:54.936Z"}},{"type":"Public","name":"til_classification","owner":"SBU-BMI","isFork":true,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":5,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-02-19T14:07:30.267Z"}},{"type":"Public","name":"manifest_util","owner":"SBU-BMI","isFork":false,"description":"manifest file generator","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-11-05T13:51:10.137Z"}},{"type":"Public","name":"quip_converter","owner":"SBU-BMI","isFork":false,"description":"Convert vendor format to tiled, multires tiff format","allTopics":[],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-08-02T17:57:12.705Z"}},{"type":"Public","name":"nscale","owner":"SBU-BMI","isFork":false,"description":"Libraries of high performance analysis methods","allTopics":[],"primaryLanguage":{"name":"C++","color":"#f34b7d"},"pullRequestCount":0,"issueCount":0,"starsCount":6,"forksCount":7,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-06-16T20:09:01.526Z"}},{"type":"Public","name":"quip_reports","owner":"SBU-BMI","isFork":false,"description":"Report generator","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-03-02T16:48:19.260Z"}},{"type":"Public","name":"u24_lymphocyte","owner":"SBU-BMI","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":5,"starsCount":30,"forksCount":20,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-01-22T21:20:51.404Z"}},{"type":"Public","name":"featuremap_util","owner":"SBU-BMI","isFork":false,"description":"Transform raw data to featuremaps","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-01-08T15:01:52.092Z"}}],"repositoryCount":115,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"SBU-BMI repositories"}