{"payload":{"pageCount":6,"repositories":[{"type":"Public","name":"neurosift","owner":"flatironinstitute","isFork":false,"description":"Browser-based NWB visualization and DANDI exploration","allTopics":[],"primaryLanguage":{"name":"TypeScript","color":"#3178c6"},"pullRequestCount":1,"issueCount":47,"starsCount":42,"forksCount":6,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-14T12:01:36.761Z"}},{"type":"Public","name":"staged-recipes","owner":"flatironinstitute","isFork":true,"description":"A place to submit conda recipes before they become fully fledged conda-forge feedstocks","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":4862,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-13T21:38:56.772Z"}},{"type":"Public","name":"finufft","owner":"flatironinstitute","isFork":false,"description":"Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3","allTopics":[],"primaryLanguage":{"name":"C++","color":"#f34b7d"},"pullRequestCount":8,"issueCount":49,"starsCount":285,"forksCount":72,"license":"Other","participation":[17,9,2,1,6,4,0,0,0,11,32,21,49,23,26,1,0,2,2,3,6,4,2,0,0,0,0,0,5,0,2,5,1,6,22,4,9,26,42,21,51,30,42,26,11,18,16,14,26,15,19,18],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-13T21:05:27.588Z"}},{"type":"Public","name":"nemos","owner":"flatironinstitute","isFork":false,"description":"NEural MOdelS, a statistical modeling framework for neuroscience.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":4,"issueCount":80,"starsCount":75,"forksCount":7,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-13T20:55:28.723Z"}},{"type":"Public","name":"nifty-ls","owner":"flatironinstitute","isFork":false,"description":"A fast Lomb-Scargle periodogram. It's nifty, and uses a NUFFT!","allTopics":["time-series","lomb-scargle-periodogram","spectral-analysis"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":4,"starsCount":26,"forksCount":1,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-13T19:26:19.223Z"}},{"type":"Public","name":"c2py","owner":"flatironinstitute","isFork":false,"description":"Clair/c2py low level library","allTopics":[],"primaryLanguage":{"name":"C++","color":"#f34b7d"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":1,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-13T14:02:11.609Z"}},{"type":"Public","name":"ManifoldEM","owner":"flatironinstitute","isFork":false,"description":"Python package for determination of conformational continua of macromolecules from single-particle cryo-EM data","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":4,"starsCount":4,"forksCount":0,"license":"GNU General Public License v3.0","participation":[0,1,0,0,0,8,17,5,0,1,0,10,0,0,0,3,5,2,0,1,0,0,1,2,0,5,31,5,0,0,3,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-12T19:00:01.646Z"}},{"type":"Public","name":"clair","owner":"flatironinstitute","isFork":false,"description":"Clair (Clang Introspection and Reflection) tools. A set of clang tools developed for Flatiron/CCQ","allTopics":[],"primaryLanguage":{"name":"C++","color":"#f34b7d"},"pullRequestCount":0,"issueCount":1,"starsCount":8,"forksCount":1,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-12T14:22:23.520Z"}},{"type":"Public","name":"neuroRSE","owner":"flatironinstitute","isFork":false,"description":"Website for CCN's neuroRSE group","allTopics":[],"primaryLanguage":{"name":"CSS","color":"#563d7c"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-12T14:09:39.734Z"}},{"type":"Public","name":"jax-finufft","owner":"flatironinstitute","isFork":false,"description":"JAX bindings to the Flatiron Institute Non-uniform Fast Fourier Transform (FINUFFT) library","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":5,"starsCount":77,"forksCount":2,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-12T00:46:00.201Z"}},{"type":"Public","name":"PyBenchFramework","owner":"flatironinstitute","isFork":false,"description":"BenchmarkToolkit is a Python library designed to simplify and streamline benchmarking tasks. This library provides a high-level abstraction over various benchmarking functions, allowing developers to easily perform performance testing and analysis with minimal setup.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-11T22:17:12.877Z"}},{"type":"Public","name":"cryoSBI","owner":"flatironinstitute","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":14,"starsCount":6,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-11T15:03:00.084Z"}},{"type":"Public","name":"sciware","owner":"flatironinstitute","isFork":false,"description":"Learning materials for scientific software development","allTopics":["learning","science","education","software-development"],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":2,"starsCount":76,"forksCount":34,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-11T14:54:27.979Z"}},{"type":"Public","name":"FMM3D","owner":"flatironinstitute","isFork":false,"description":"Flatiron Institute Fast Multipole Libraries --- This codebase is a set of libraries to compute N-body interactions governed by the Laplace and Helmholtz equations, to a specified precision, in three dimensions, on a multi-core shared-memory machine. ","allTopics":[],"primaryLanguage":{"name":"Fortran","color":"#4d41b1"},"pullRequestCount":0,"issueCount":21,"starsCount":91,"forksCount":36,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-11T13:47:35.121Z"}},{"type":"Public","name":"stan-playground","owner":"flatironinstitute","isFork":false,"description":"Run Stan models in the browser","allTopics":[],"primaryLanguage":{"name":"TypeScript","color":"#3178c6"},"pullRequestCount":1,"issueCount":14,"starsCount":4,"forksCount":1,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-11T09:27:31.143Z"}},{"type":"Public","name":"Cryo-EM-Heterogeneity-Challenge-1","owner":"flatironinstitute","isFork":false,"description":"The Inaugural Flatiron Institute Cryo-EM Heterogeneity Community Challenge","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":2,"issueCount":16,"starsCount":4,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-11T01:15:25.559Z"}},{"type":"Public","name":"spikeforest","owner":"flatironinstitute","isFork":false,"description":"Spike sorting benchmarking system","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":12,"starsCount":23,"forksCount":6,"license":"Apache License 2.0","participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-09T13:19:10.237Z"}},{"type":"Public","name":"dendro-old","owner":"flatironinstitute","isFork":false,"description":"Analyze neuroscience data in the cloud","allTopics":["open-source","neuroscience","open-science","cloud-computing","spike-sorting","neurophysiology"],"primaryLanguage":{"name":"TypeScript","color":"#3178c6"},"pullRequestCount":2,"issueCount":17,"starsCount":19,"forksCount":2,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-06T23:41:55.242Z"}},{"type":"Public","name":"slurm","owner":"flatironinstitute","isFork":true,"description":"Slurm: A Highly Scalable Workload Manager","allTopics":[],"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":652,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-06T16:01:24.537Z"}},{"type":"Public","name":"CaImAn","owner":"flatironinstitute","isFork":false,"description":"Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.","allTopics":["2-photon","calcium-imaging","motion-correction","source-extraction","deconvolution","cnmf"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":8,"issueCount":64,"starsCount":623,"forksCount":364,"license":"GNU General Public License v2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-03T23:30:55.604Z"}},{"type":"Public","name":"public_www","owner":"flatironinstitute","isFork":false,"description":"Basic templates for individual user pages in the public/_www directory","allTopics":[],"primaryLanguage":{"name":"SCSS","color":"#c6538c"},"pullRequestCount":0,"issueCount":0,"starsCount":10,"forksCount":7,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-03T18:06:50.927Z"}},{"type":"Public","name":"MutantAutoMate","owner":"flatironinstitute","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":2,"issueCount":4,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-28T20:11:02.968Z"}},{"type":"Public","name":"binderhub","owner":"flatironinstitute","isFork":true,"description":"Deterministically build docker images from a git repository + commit","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":2,"starsCount":2,"forksCount":387,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-26T15:26:14.845Z"}},{"type":"Public","name":"alphafold","owner":"flatironinstitute","isFork":true,"description":"Open source code for AlphaFold.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":2198,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-20T20:49:17.802Z"}},{"type":"Public","name":"inferelator-velocity","owner":"flatironinstitute","isFork":false,"description":"Calculate dynamic (time-dependent) latent parameters from single-cell expression data","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-20T16:44:10.503Z"}},{"type":"Public","name":"aLENS_analysis","owner":"flatironinstitute","isFork":false,"description":"Postprocessing & analysis scripts for aLENS data","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":2,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-19T15:47:53.428Z"}},{"type":"Public","name":"PointCloud_Regression","owner":"flatironinstitute","isFork":false,"description":"Point Cloud regression with new algebraic representation on ModelNet dataset (ICCV 2023)","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":10,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-14T19:30:16.703Z"}},{"type":"Public","name":"ccq-software-build","owner":"flatironinstitute","isFork":false,"description":"CCQ software build scripts","allTopics":[],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":0,"starsCount":10,"forksCount":4,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-14T16:54:30.608Z"}},{"type":"Public","name":"flathub","owner":"flatironinstitute","isFork":false,"description":"A simple elasticsearch frontend for serving astrophysical simulation catalog data","allTopics":[],"primaryLanguage":{"name":"Haskell","color":"#5e5086"},"pullRequestCount":0,"issueCount":14,"starsCount":10,"forksCount":5,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-14T15:38:48.655Z"}},{"type":"Public","name":"cppdlr","owner":"flatironinstitute","isFork":false,"description":"Discrete Lehmann representation of imaginary time Green's functions","allTopics":[],"primaryLanguage":{"name":"C++","color":"#f34b7d"},"pullRequestCount":0,"issueCount":1,"starsCount":8,"forksCount":4,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-13T21:19:20.134Z"}}],"repositoryCount":175,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"flatironinstitute repositories"}