{"payload":{"pageCount":14,"repositories":[{"type":"Public","name":"wes-qc","owner":"wtsi-hgi","isFork":false,"description":"Sample and variant QC for exome cohort studies","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-04T13:00:28.803Z"}},{"type":"Public","name":"spack-repo","owner":"wtsi-hgi","isFork":false,"description":"Spack Package Repository","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":3,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-04T12:32:20.329Z"}},{"type":"Public","name":"farmers-report","owner":"wtsi-hgi","isFork":false,"description":"Weekly report for farm usage","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":2,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-04T10:01:45.106Z"}},{"type":"Public","name":"ibackup","owner":"wtsi-hgi","isFork":false,"description":"Performant backups of many files to iRODS","allTopics":[],"primaryLanguage":{"name":"Go","color":"#00ADD8"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-03T14:54:30.181Z"}},{"type":"Public","name":"nf_longread","owner":"wtsi-hgi","isFork":false,"description":"nextflow pipeline for long read processing","allTopics":[],"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-03T14:41:17.418Z"}},{"type":"Public","name":"softpack-web","owner":"wtsi-hgi","isFork":false,"description":"Softpack Web provides a graphical user interface for Softpack services. ","allTopics":["react","graphql"],"primaryLanguage":{"name":"TypeScript","color":"#3178c6"},"pullRequestCount":5,"issueCount":5,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-03T14:36:38.691Z"}},{"type":"Public","name":"yascp","owner":"wtsi-hgi","isFork":false,"description":"scRNA multimodal analysis pipeline utilised for large dataset processing","allTopics":["scrna-seq-analysis"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":0,"starsCount":13,"forksCount":7,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-03T13:07:15.389Z"}},{"type":"Public","name":"sarek","owner":"wtsi-hgi","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":1,"issueCount":0,"starsCount":0,"forksCount":2,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-03T11:17:40.479Z"}},{"type":"Public","name":"go-softpack-builder","owner":"wtsi-hgi","isFork":false,"description":"Go implementation of a softpack builder service","allTopics":[],"primaryLanguage":{"name":"Go","color":"#00ADD8"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-02T10:22:23.331Z"}},{"type":"Public","name":"r-spack-recipe-builder","owner":"wtsi-hgi","isFork":false,"description":"Spack recipe creator for R packages in CRAN and Bioconductor used to build up the ubeR module for use in farm22","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-02T10:10:42.532Z"}},{"type":"Public","name":"go-farmer","owner":"wtsi-hgi","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Go","color":"#00ADD8"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-01T08:10:11.227Z"}},{"type":"Public","name":"http-proxy-logger","owner":"wtsi-hgi","isFork":true,"description":"HTTP proxy server that logs requests and responses","allTopics":[],"primaryLanguage":{"name":"Go","color":"#00ADD8"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":2,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-28T12:44:11.632Z"}},{"type":"Public","name":"admixture-from-glimpse","owner":"wtsi-hgi","isFork":false,"description":"Run admixture on GLIMPSE imputed genotypes to predict sample populations","allTopics":[],"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-28T10:20:55.649Z"}},{"type":"Public","name":"uber-recipe-creator","owner":"wtsi-hgi","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Go","color":"#00ADD8"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-27T15:49:22.820Z"}},{"type":"Public","name":"cwl-graph-generate","owner":"wtsi-hgi","isFork":false,"description":"Generates https://view.commonwl.org/ like workflows images, showing a complete workflow.","allTopics":["graph","image-generation","cwl"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":0,"starsCount":2,"forksCount":2,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-27T12:35:36.090Z"}},{"type":"Public","name":"softpack-core","owner":"wtsi-hgi","isFork":false,"description":"SoftPack Core ","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-27T11:34:08.939Z"}},{"type":"Public","name":"spack-go","owner":"wtsi-hgi","isFork":false,"description":"Basic Spack wrapper - in Go!","allTopics":[],"primaryLanguage":{"name":"Go","color":"#00ADD8"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-25T10:06:38.405Z"}},{"type":"Public","name":"softpack-builder","owner":"wtsi-hgi","isFork":false,"description":"SoftPack Builder provides services for building SoftPack environments","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":8,"issueCount":1,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-18T21:57:23.141Z"}},{"type":"Public","name":"QTLight","owner":"wtsi-hgi","isFork":false,"description":"eqtl analysis pipeline using tensorqtl","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":6,"forksCount":4,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-18T12:07:40.911Z"}},{"type":"Public","name":"aeg-scrambler","owner":"wtsi-hgi","isFork":false,"description":"AEG SCRAMBLEr","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":10,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-07T13:09:35.096Z"}},{"type":"Public","name":"mercuryrc","owner":"wtsi-hgi","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-04T07:53:14.265Z"}},{"type":"Public","name":"glimpse-nextflow","owner":"wtsi-hgi","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-15T14:03:59.134Z"}},{"type":"Public","name":"wtsi-hgi.github.io","owner":"wtsi-hgi","isFork":false,"description":"Github webpage for HGI projects ","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-15T13:05:44.575Z"}},{"type":"Public","name":"MAVEQC","owner":"wtsi-hgi","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-13T08:46:52.864Z"}},{"type":"Public","name":"coloc-flow","owner":"wtsi-hgi","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":0,"issueCount":0,"starsCount":3,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-03T15:56:20.361Z"}},{"type":"Public","name":"nf_tower_irods_to_lustre","owner":"wtsi-hgi","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":1,"issueCount":1,"starsCount":0,"forksCount":1,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-26T10:21:38.807Z"}},{"type":"Public","name":"bin2json","owner":"wtsi-hgi","isFork":false,"description":"A simple C program to convert binary encode JSON into textual JSON","allTopics":[],"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-15T15:27:56.018Z"}},{"type":"Public","name":"softpack-docs","owner":"wtsi-hgi","isFork":false,"description":"SoftPack Documentation","allTopics":[],"primaryLanguage":{"name":"JavaScript","color":"#f1e05a"},"pullRequestCount":10,"issueCount":5,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-14T20:14:44.931Z"}},{"type":"Public","name":"osdataproc","owner":"wtsi-hgi","isFork":true,"description":"osdataproc is a command-line tool for creating an OpenStack cluster with Apache Spark and Apache Hadoop configured. It comes with JupyterLab and Hail, a genomic data analysis library built on Spark installed, as well as Netdata for monitoring.","allTopics":[],"primaryLanguage":{"name":"Jinja","color":"#a52a22"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":3,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-12T13:44:50.451Z"}},{"type":"Public","name":"spack-repo-testing","owner":"wtsi-hgi","isFork":true,"description":"Spack Package Repository (static version for tests)","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":3,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-02-06T09:11:24.329Z"}}],"repositoryCount":401,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"wtsi-hgi repositories"}