{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":157603644,"defaultBranch":"master","name":"vcfMerger2","ownerLogin":"tgen","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2018-11-14T20:00:00.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/828448?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1694051767.0","currentOid":""},"activityList":{"items":[{"before":"8f0c1a6552c6d4dbf733551a0b1f9f47579e2a3a","after":"c882a7746c6deacfcbf927c32b2907c8512f44f7","ref":"refs/heads/master","pushedAt":"2023-09-11T21:13:27.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"ChristopheLegendre","name":"Chris","path":"/ChristopheLegendre","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2623980?s=80&v=4"},"commit":{"message":"Merge remote-tracking branch 'origin/master'","shortMessageHtmlLink":"Merge remote-tracking branch 'origin/master'"}},{"before":"f1d480c17ec552bc5d49297a8bf5c1f6964f98b8","after":"8f0c1a6552c6d4dbf733551a0b1f9f47579e2a3a","ref":"refs/heads/master","pushedAt":"2023-09-09T02:27:19.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ChristopheLegendre","name":"Chris","path":"/ChristopheLegendre","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2623980?s=80&v=4"},"commit":{"message":"Remove 4th Arguments out prepped name\n\nThe 4th arguments was for providing a name to the prepped VCF. We do not allow that anymore and defined the prepped filename from the input VCF name","shortMessageHtmlLink":"Remove 4th Arguments out prepped name"}},{"before":"72dadd15bb2fb52ecb4d2393b77369bc5480f84f","after":"f1d480c17ec552bc5d49297a8bf5c1f6964f98b8","ref":"refs/heads/master","pushedAt":"2023-09-08T21:32:06.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ChristopheLegendre","name":"Chris","path":"/ChristopheLegendre","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2623980?s=80&v=4"},"commit":{"message":"added SVLEN to the Dragen snv records for future compatibility with SV calls and dedup task when sv+snv are merged using vcfMerger2","shortMessageHtmlLink":"added SVLEN to the Dragen snv records for future compatibility with S…"}},{"before":"14381eae881740909944e2be4b91ee2dd9124a3f","after":null,"ref":"refs/tags/v0.9.5","pushedAt":"2023-09-07T01:55:39.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"bryce-turner","name":"Bryce Turner","path":"/bryce-turner","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/40504111?s=80&v=4"}},{"before":"ce648817c78b093f50eb64d3583a866c5ea3ebb6","after":"72dadd15bb2fb52ecb4d2393b77369bc5480f84f","ref":"refs/heads/master","pushedAt":"2023-09-07T01:41:47.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ChristopheLegendre","name":"Chris","path":"/ChristopheLegendre","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2623980?s=80&v=4"},"commit":{"message":"substitution issue: Remove PR[0:1] from sed statement","shortMessageHtmlLink":"substitution issue: Remove PR[0:1] from sed statement"}},{"before":"14381eae881740909944e2be4b91ee2dd9124a3f","after":"ce648817c78b093f50eb64d3583a866c5ea3ebb6","ref":"refs/heads/master","pushedAt":"2023-09-07T01:23:32.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ChristopheLegendre","name":"Chris","path":"/ChristopheLegendre","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2623980?s=80&v=4"},"commit":{"message":"Fix Missed Renaming Variable VCF_ORIGINAL_INPUT to VCF_NO_INDELS_FOR_PHASER (we missed the last one at the end of the script)","shortMessageHtmlLink":"Fix Missed Renaming Variable VCF_ORIGINAL_INPUT to VCF_NO_INDELS_FOR_…"}},{"before":"009c653efd4c0bda72835088f1ea2c7f5bf4fdd7","after":null,"ref":"refs/heads/adding_new_tools_dragen","pushedAt":"2023-09-05T22:31:14.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"bryce-turner","name":"Bryce Turner","path":"/bryce-turner","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/40504111?s=80&v=4"}},{"before":null,"after":"009c653efd4c0bda72835088f1ea2c7f5bf4fdd7","ref":"refs/heads/adding_new_tools_dragen","pushedAt":"2023-09-05T22:31:09.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"bryce-turner","name":"Bryce Turner","path":"/bryce-turner","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/40504111?s=80&v=4"},"commit":{"message":"added a small note for the AD number value","shortMessageHtmlLink":"added a small note for the AD number value"}},{"before":"009c653efd4c0bda72835088f1ea2c7f5bf4fdd7","after":null,"ref":"refs/heads/adding_new_tools_dragen","pushedAt":"2023-09-05T22:31:06.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"bryce-turner","name":"Bryce Turner","path":"/bryce-turner","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/40504111?s=80&v=4"}},{"before":"d9f015efd642d5ee31afe46a9611ca49b4f699b8","after":"14381eae881740909944e2be4b91ee2dd9124a3f","ref":"refs/heads/master","pushedAt":"2023-09-05T22:31:05.000Z","pushType":"pr_merge","commitsCount":30,"pusher":{"login":"bryce-turner","name":"Bryce Turner","path":"/bryce-turner","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/40504111?s=80&v=4"},"commit":{"message":"Merge pull request #29 from tgen/adding_new_tools_dragen","shortMessageHtmlLink":"Merge pull request #29 from tgen/adding_new_tools_dragen"}},{"before":"7278830f71f57909877852907d0c43d73b72a348","after":null,"ref":"refs/tags/v0.9.5-dev1","pushedAt":"2023-09-05T22:15:44.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"bryce-turner","name":"Bryce Turner","path":"/bryce-turner","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/40504111?s=80&v=4"}},{"before":"d95356b8e37eab324566ebc86e39b1740a1c751a","after":"009c653efd4c0bda72835088f1ea2c7f5bf4fdd7","ref":"refs/heads/adding_new_tools_dragen","pushedAt":"2023-09-05T21:23:09.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ChristopheLegendre","name":"Chris","path":"/ChristopheLegendre","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2623980?s=80&v=4"},"commit":{"message":"added a small note for the AD number value","shortMessageHtmlLink":"added a small note for the AD number value"}},{"before":"c94d0a70a5f2cc28f68fc96c5166c064a3b123db","after":"d95356b8e37eab324566ebc86e39b1740a1c751a","ref":"refs/heads/adding_new_tools_dragen","pushedAt":"2023-09-05T21:19:41.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ChristopheLegendre","name":"Chris","path":"/ChristopheLegendre","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2623980?s=80&v=4"},"commit":{"message":"added double quotes around variable","shortMessageHtmlLink":"added double quotes around variable"}},{"before":"4331ad416e10e8a960719f0487ad0ab44bebbb65","after":"c94d0a70a5f2cc28f68fc96c5166c064a3b123db","ref":"refs/heads/adding_new_tools_dragen","pushedAt":"2023-09-05T21:14:01.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ChristopheLegendre","name":"Chris","path":"/ChristopheLegendre","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2623980?s=80&v=4"},"commit":{"message":"fix again wrong sed expression; remove newline in sed expression","shortMessageHtmlLink":"fix again wrong sed expression; remove newline in sed expression"}},{"before":"820f53c22eb674ff29fec859218c3976b9da12b0","after":"4331ad416e10e8a960719f0487ad0ab44bebbb65","ref":"refs/heads/adding_new_tools_dragen","pushedAt":"2023-09-05T21:10:53.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ChristopheLegendre","name":"Chris","path":"/ChristopheLegendre","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2623980?s=80&v=4"},"commit":{"message":"fix wrong sed expression","shortMessageHtmlLink":"fix wrong sed expression"}},{"before":"4aaf84102d810ca5a7929446ff3e67087c1878ca","after":"820f53c22eb674ff29fec859218c3976b9da12b0","ref":"refs/heads/adding_new_tools_dragen","pushedAt":"2023-09-05T21:02:16.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ChristopheLegendre","name":"Chris","path":"/ChristopheLegendre","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2623980?s=80&v=4"},"commit":{"message":"update header by making sure the Number value is correct for new TAGs in FORMAT","shortMessageHtmlLink":"update header by making sure the Number value is correct for new TAGs…"}},{"before":"7278830f71f57909877852907d0c43d73b72a348","after":"4aaf84102d810ca5a7929446ff3e67087c1878ca","ref":"refs/heads/adding_new_tools_dragen","pushedAt":"2023-09-05T20:56:47.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ChristopheLegendre","name":"Chris","path":"/ChristopheLegendre","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2623980?s=80&v=4"},"commit":{"message":"update the header after adding TAGs to FORMAT","shortMessageHtmlLink":"update the header after adding TAGs to FORMAT"}},{"before":"52d2ddc51cc694292d9984b29b82fb43506dc4b8","after":null,"ref":"refs/tags/v0.9.5-rc3","pushedAt":"2023-09-02T02:17:04.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"bryce-turner","name":"Bryce Turner","path":"/bryce-turner","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/40504111?s=80&v=4"}},{"before":"fe2850553fe14dbcd7012539cecd351b10ab5e31","after":null,"ref":"refs/tags/v0.9.5-rc2","pushedAt":"2023-09-02T02:16:59.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"bryce-turner","name":"Bryce Turner","path":"/bryce-turner","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/40504111?s=80&v=4"}},{"before":"4ca9295e158ccc9342ec0faa376d912e735520d8","after":null,"ref":"refs/tags/v0.9.5-rc","pushedAt":"2023-09-02T02:16:55.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"bryce-turner","name":"Bryce Turner","path":"/bryce-turner","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/40504111?s=80&v=4"}},{"before":"4612934f800ac3cfee2c3771464af6f1dca59e0a","after":"7278830f71f57909877852907d0c43d73b72a348","ref":"refs/heads/adding_new_tools_dragen","pushedAt":"2023-09-02T02:14:46.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ChristopheLegendre","name":"Chris","path":"/ChristopheLegendre","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2623980?s=80&v=4"},"commit":{"message":"remove check file since file does not exist","shortMessageHtmlLink":"remove check file since file does not exist"}},{"before":"52d2ddc51cc694292d9984b29b82fb43506dc4b8","after":null,"ref":"refs/tags/v0.9.5-rc3","pushedAt":"2023-09-02T02:14:31.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"bryce-turner","name":"Bryce Turner","path":"/bryce-turner","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/40504111?s=80&v=4"}},{"before":"fe2850553fe14dbcd7012539cecd351b10ab5e31","after":null,"ref":"refs/tags/v0.9.5-rc2","pushedAt":"2023-09-02T02:12:06.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"bryce-turner","name":"Bryce Turner","path":"/bryce-turner","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/40504111?s=80&v=4"}},{"before":"4ca9295e158ccc9342ec0faa376d912e735520d8","after":null,"ref":"refs/tags/v0.9.5-rc","pushedAt":"2023-09-02T02:12:02.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"bryce-turner","name":"Bryce Turner","path":"/bryce-turner","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/40504111?s=80&v=4"}},{"before":"e586b8f8f132d50484c5b4c1d2fb45a8b458ed35","after":"4612934f800ac3cfee2c3771464af6f1dca59e0a","ref":"refs/heads/adding_new_tools_dragen","pushedAt":"2023-09-02T02:10:17.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ChristopheLegendre","name":"Chris","path":"/ChristopheLegendre","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2623980?s=80&v=4"},"commit":{"message":"modify check_inputs to make sure of the full path and remove REF_GENOME from being needed.","shortMessageHtmlLink":"modify check_inputs to make sure of the full path and remove REF_GENO…"}},{"before":"76db33ec057934ce904426dd0c22ce07513fb45a","after":"e586b8f8f132d50484c5b4c1d2fb45a8b458ed35","ref":"refs/heads/adding_new_tools_dragen","pushedAt":"2023-09-02T01:42:39.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ChristopheLegendre","name":"Chris","path":"/ChristopheLegendre","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2623980?s=80&v=4"},"commit":{"message":"added check inputs function to germline prep","shortMessageHtmlLink":"added check inputs function to germline prep"}},{"before":"abc5b1f1743098059dce8901374ef802fedbba97","after":"76db33ec057934ce904426dd0c22ce07513fb45a","ref":"refs/heads/adding_new_tools_dragen","pushedAt":"2023-09-02T01:39:56.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"ChristopheLegendre","name":"Chris","path":"/ChristopheLegendre","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2623980?s=80&v=4"},"commit":{"message":"added check inputs","shortMessageHtmlLink":"added check inputs"}},{"before":"5eb5817be2882af0102ecf15419ca963bc3e314a","after":"abc5b1f1743098059dce8901374ef802fedbba97","ref":"refs/heads/adding_new_tools_dragen","pushedAt":"2023-09-02T00:20:28.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ChristopheLegendre","name":"Chris","path":"/ChristopheLegendre","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2623980?s=80&v=4"},"commit":{"message":"replace $2 with readlink -f $2 for DIR_OUTPUT","shortMessageHtmlLink":"replace $2 with readlink -f $2 for DIR_OUTPUT"}},{"before":"52d2ddc51cc694292d9984b29b82fb43506dc4b8","after":"5eb5817be2882af0102ecf15419ca963bc3e314a","ref":"refs/heads/adding_new_tools_dragen","pushedAt":"2023-09-01T23:30:37.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"ChristopheLegendre","name":"Chris","path":"/ChristopheLegendre","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2623980?s=80&v=4"},"commit":{"message":"fix rename DIR_WORK variable to DIR_OUTPUT","shortMessageHtmlLink":"fix rename DIR_WORK variable to DIR_OUTPUT"}},{"before":"fe2850553fe14dbcd7012539cecd351b10ab5e31","after":"52d2ddc51cc694292d9984b29b82fb43506dc4b8","ref":"refs/heads/adding_new_tools_dragen","pushedAt":"2023-09-01T21:59:56.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"ChristopheLegendre","name":"Chris","path":"/ChristopheLegendre","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2623980?s=80&v=4"},"commit":{"message":"replace cp with rsync\nReplace MAIN() content with the same content from somatic","shortMessageHtmlLink":"replace cp with rsync"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"Y3Vyc29yOnYyOpK7MjAyMy0wOS0xMVQyMToxMzoyNy4wMDAwMDBazwAAAAN-OrQd","startCursor":"Y3Vyc29yOnYyOpK7MjAyMy0wOS0xMVQyMToxMzoyNy4wMDAwMDBazwAAAAN-OrQd","endCursor":"Y3Vyc29yOnYyOpK7MjAyMy0wOS0wMVQyMTo1OTo1Ni4wMDAwMDBazwAAAAN3xrxP"}},"title":"Activity · tgen/vcfMerger2"}