A collection of useful methods for handling, processing, and visualizing calcium imaging data.
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Updated
May 19, 2024 - Python
A collection of useful methods for handling, processing, and visualizing calcium imaging data.
[Pillow] Denoising Images retrieved from Confocal Calcium Imaging.
🧠 Adaptive Platform for Neuroscience Experiments
Experiment automation for Coherent's Monaco Laser
Computational Neuroscientists' Comprehensive Neuronal Simulator
Mesmerize plugin for the napari viewer
GUI for post-treatment of calcium imaging data.
Calcium Imaging Analyzer (CaImAn) consists of a bunch of scripts written in python and put together to speed the analysis of calcium imaging experiments performed with the NIS-Elements Advanced Research software from Nikon.
GUI for visualizing CaImAn processed imaging data.
A simple Python tool to convert spike trains to calcium fluorescence-like traces.
C.I.T.R.O.N.S - Calcium Imaging Treatment using ROis, Numpy and Scipy
Simple tool for Calcium-imaging data preprocessing, based on timing-metadata from Olympus Fluoview sowtware
A collection of functions that facilitate the analysis of experimental calcium imaging data.
[iScience] [Tensorflow] Subcellular Signal Segmenting Spatiotemporal Model.
Python functions to convert calcium imaging data and associated intracellular electrophysiology data to Neurodata Without Borders (NWB) file format
Real-time, interactive exploration of 3D image stacks
Codes related to paper "Automated sleep stage classification of wide-field calcium imaging data via multiplex visibility graphs and deep learning"
Spatio-temporal image restoration with entropy-based regularization for application to low-SNR fluorescence microscopy image series.
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