Spikefinder submission
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Updated
Apr 28, 2017 - Python
Spikefinder submission
A collection of functions that facilitate the analysis of experimental calcium imaging data.
a Python machine learning library for neurophysiology data
SamuROI - Structured analysis of multiple user-defined ROIs, an open source Python-based analysis environment for imaging data.
a Python toolbox for reproducible analysis and visualization of NeuroPhysiological data.
Real-time, interactive exploration of 3D image stacks
🧠 Adaptive Platform for Neuroscience Experiments
Experiment automation for Coherent's Monaco Laser
Codes related to paper "Automated sleep stage classification of wide-field calcium imaging data via multiplex visibility graphs and deep learning"
A simple Python tool to convert spike trains to calcium fluorescence-like traces.
Calcium Imaging Analyzer (CaImAn) consists of a bunch of scripts written in python and put together to speed the analysis of calcium imaging experiments performed with the NIS-Elements Advanced Research software from Nikon.
[iScience] [Tensorflow] Subcellular Signal Segmenting Spatiotemporal Model.
Mesmerize plugin for the napari viewer
Computational Neuroscientists' Comprehensive Neuronal Simulator
Fast, Simple Calcium Imaging Segmentation with Fully Convolutional Networks (https://arxiv.org/abs/1707.06314)
HNCcorr algorithm for neuron identification in calcium imaging datasets.
Python functions to convert calcium imaging data and associated intracellular electrophysiology data to Neurodata Without Borders (NWB) file format
Synthesising Realistic Calcium Imaging Data of Neuronal Populations Using GAN.
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