Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
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Updated
Aug 21, 2024 - Python
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
Platform for Calcium Imaging analysis. DEPRECATED.
Accurate denoising of voltage imaging data through statistically unbiased prediction, Nature Methods.
Fast, Simple Calcium Imaging Segmentation with Fully Convolutional Networks (https://arxiv.org/abs/1707.06314)
a Python machine learning library for neurophysiology data
SamuROI - Structured analysis of multiple user-defined ROIs, an open source Python-based analysis environment for imaging data.
HNCcorr algorithm for neuron identification in calcium imaging datasets.
Acquisition and analysis of Ca++ imaging and behavior video streams without academic opportunism
Spikefinder submission
Experimentlal pure-python API to read Inscopix data
a Python toolbox for reproducible analysis and visualization of NeuroPhysiological data.
Synthesising Realistic Calcium Imaging Data of Neuronal Populations Using GAN.
Calcium Imaging Data ANalysis software
[iScience] [Tensorflow] Subcellular Signal Segmenting Spatiotemporal Model.
Python functions to convert calcium imaging data and associated intracellular electrophysiology data to Neurodata Without Borders (NWB) file format
Real-time, interactive exploration of 3D image stacks
Codes related to paper "Automated sleep stage classification of wide-field calcium imaging data via multiplex visibility graphs and deep learning"
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