High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
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Updated
Aug 22, 2024 - Python
High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
Simple tool for Calcium-imaging data preprocessing, based on timing-metadata from Olympus Fluoview sowtware
Experimentlal pure-python API to read Inscopix data
Accurate denoising of voltage imaging data through statistically unbiased prediction, Nature Methods.
A collection of useful methods for handling, processing, and visualizing calcium imaging data.
Acquisition and analysis of Ca++ imaging and behavior video streams without academic opportunism
Spatio-temporal image restoration with entropy-based regularization for application to low-SNR fluorescence microscopy image series.
Platform for Calcium Imaging analysis. DEPRECATED.
[Pillow] Denoising Images retrieved from Confocal Calcium Imaging.
GUI for post-treatment of calcium imaging data.
GUI for visualizing CaImAn processed imaging data.
C.I.T.R.O.N.S - Calcium Imaging Treatment using ROis, Numpy and Scipy
Calcium Imaging Data ANalysis software
Synthesising Realistic Calcium Imaging Data of Neuronal Populations Using GAN.
Python functions to convert calcium imaging data and associated intracellular electrophysiology data to Neurodata Without Borders (NWB) file format
HNCcorr algorithm for neuron identification in calcium imaging datasets.
Fast, Simple Calcium Imaging Segmentation with Fully Convolutional Networks (https://arxiv.org/abs/1707.06314)
Computational Neuroscientists' Comprehensive Neuronal Simulator
Mesmerize plugin for the napari viewer
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