-
Notifications
You must be signed in to change notification settings - Fork 1
/
cluster.yaml
executable file
·40 lines (36 loc) · 1.22 KB
/
cluster.yaml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
__default__:
nCPUs : 1
queue : "normal"
memory : 3000
resources : "\"rusage[mem=3000] span[hosts=1]\""
name : "JOBNAME.{rule}.{wildcards}"
output : "logs/cluster_{rule}.{wildcards}.o"
error : "logs/cluster_{rule}.{wildcards}.e"
supernova_assembly:
nCPUs : 10
queue : "bigmem"
memory : 600000
resources : "\"rusage[mem=600000] span[hosts=1]\""
output : "logs/cluster_{rule}.{wildcards}.o"
error : "logs/cluster_{rule}.{wildcards}.e"
longranger_basic:
nCPUs : 10
queue : "multicore20"
memory : 50000
resources : "\"rusage[mem=50000] span[hosts=1]\""
output : "logs/cluster_{rule}.{wildcards}.o"
error : "logs/cluster_{rule}.{wildcards}.e"
jellyfish_kmer:
nCPUs : 4
queue : "bigmem"
memory : 100000
resources : "\"rusage[mem=100000] span[hosts=1]\""
output : "logs/cluster_{rule}.{wildcards}.o"
error : "logs/cluster_{rule}.{wildcards}.e"
shasta:
nCPUs : 10
queue : "bigmem"
memory : 200000
resources : "\"rusage[mem=200000] span[hosts=1]\""
output : "logs/cluster_{rule}.{wildcards}.o"
error : "logs/cluster_{rule}.{wildcards}.e"