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DESCRIPTION
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DESCRIPTION
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Package: PlastoGram
Type: Package
Title: Prediction of Subchloroplast localization
Version: 1.0
LazyData: TRUE
Date: 2021-10-17
Authors@R: c(person("Katarzyna", "Sidorczuk",
email = "[email protected]",
comment = c(ORCID = "0000-0001-6576-9054"),
role = c("cre", "aut")),
person("Michal", "Burdukiewicz",
email = "[email protected]",
comment = c(ORCID = "0000-0001-8926-582X"),
role = c("aut")),
person("Filip", "Pietluch",
email = "[email protected]",
role = c("ctb"),
comment = c(ORCID = "0000-0001-6218-9804")))
Description: Predicts subchloroplast localization of proteins using random forests trained on the
n-gram encoded peptides, profile-HMM models and higher-order GLM model. The implemented
algorithm can be accessed from both the command line and shiny-based GUI.
License: GPL-3
URL: https://github.com/BioGenies/PlastoGram
BugReports: https://github.com/BioGenies/PlastoGram/issues
Encoding: UTF-8
Depends:
R (>= 3.5.0)
Imports:
biogram,
dplyr,
seqR,
ranger,
readr,
purrr,
shiny
Suggests:
DT,
ggplot2,
pander,
rmarkdown,
shinythemes,
spelling
RoxygenNote: 7.2.0
Language: en-US