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gvf1o.xml
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gvf1o.xml
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<?xml version="1.0"?>
<!DOCTYPE rdf:RDF [
<!ENTITY dc "http://purl.org/dc/terms/" >
<!ENTITY owl "http://www.w3.org/2002/07/owl#" >
<!ENTITY ncbi "http://purl.obolibrary.org/obo/" >
<!ENTITY xsd "http://www.w3.org/2001/XMLSchema#" >
<!ENTITY rdfs "http://www.w3.org/2000/01/rdf-schema#" >
<!ENTITY faldo "http://biohackathon.org/resource/faldo#" >
<!ENTITY rdf "http://www.w3.org/1999/02/22-rdf-syntax-ns#" >
]>
<rdf:RDF xmlns="https://github.com/BioInterchange/Ontologies/gvf1o#"
xml:base="https://github.com/BioInterchange/Ontologies/gvf1o"
xmlns:dc="http://purl.org/dc/terms/"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:ncbi="http://purl.obolibrary.org/obo/"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:faldo="http://biohackathon.org/resource/faldo#">
<owl:Ontology rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#">
<dc:rights>Creative Commons - By Attribution [http://creativecommons.org/licenses/by/3.0/].</dc:rights>
<rdfs:seeAlso>https://github.com/BioInterchange/Ontologies</rdfs:seeAlso>
<owl:versionInfo>1.0.18</owl:versionInfo>
<dc:description xml:lang="en">An ontology that describes the Genome Variation Format Version 1 (GVF) by Karen Eilbeck, Paul Flicek, Gabor Marth, Martin Reese, Lincoln Stein and Mark Yandell (http://www.sequenceontology.org/resources/gvf.html). The ontology was inspired by previous work of Robert Hoehndorf's RDF2OWL (http://code.google.com/p/rdf2owl).</dc:description>
<dc:contributor xml:lang="en">Begum Durgahee</dc:contributor>
<dc:contributor xml:lang="en">Chris Mungall</dc:contributor>
<dc:contributor xml:lang="en">Erick Antezana</dc:contributor>
<dc:title xml:lang="en">Genomic Variation Format Version 1 Ontology (GVF1O)</dc:title>
<dc:creator xml:lang="en">Joachim Baran</dc:creator>
<dc:contributor xml:lang="en">Joachim Baran</dc:contributor>
<dc:contributor xml:lang="en">Karen Eilbeck</dc:contributor>
<dc:contributor xml:lang="en">Michel Dumontier</dc:contributor>
<dc:contributor xml:lang="en">Robert Hoehndorf</dc:contributor>
</owl:Ontology>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Annotation properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Datatypes
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Object Properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0004 -->
<owl:ObjectProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0004">
<rdfs:label>seqid</rdfs:label>
<rdfs:comment xml:lang="en">Establishes the landmark (e.g. a chromosome) on which a feature is located.</rdfs:comment>
<rdfs:domain rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0002"/>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0066"/>
<rdfs:range rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0135"/>
</owl:ObjectProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0010 -->
<owl:ObjectProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0010">
<rdf:type rdf:resource="&owl;FunctionalProperty"/>
<rdfs:label>strand</rdfs:label>
<rdfs:comment xml:lang="en">Strand of the feature.</rdfs:comment>
<rdfs:domain rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0002"/>
<rdfs:range rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0016"/>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0066"/>
</owl:ObjectProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0012 -->
<owl:ObjectProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0012">
<rdfs:label>attributes</rdfs:label>
<rdfs:comment xml:lang="en">Tag name/value pair attributes of a feature.</rdfs:comment>
<rdfs:domain rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0002"/>
<rdfs:range rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0003"/>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0066"/>
</owl:ObjectProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0014 -->
<owl:ObjectProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0014">
<rdfs:label>parent</rdfs:label>
<rdfs:comment xml:lang="en">Link out to the parent feature.</rdfs:comment>
<rdfs:range rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0002"/>
<rdfs:domain rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0002"/>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0066"/>
</owl:ObjectProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0015 -->
<owl:ObjectProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0015">
<rdfs:label>contains</rdfs:label>
<rdfs:comment xml:lang="en">Relationship that describes which features belong to a feature set.</rdfs:comment>
<rdfs:domain rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0001"/>
<rdfs:range rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0002"/>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0068"/>
</owl:ObjectProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0021 -->
<owl:ObjectProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0021">
<rdf:type rdf:resource="&owl;FunctionalProperty"/>
<rdfs:label>region</rdfs:label>
<rdfs:comment xml:lang="en">FALDO "Region" instance replacement for a feature's start, stop, strand properties.</rdfs:comment>
<rdfs:range rdf:resource="&faldo;Region"/>
<rdfs:domain rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0002"/>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0066"/>
</owl:ObjectProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0023 -->
<owl:ObjectProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0023">
<rdfs:label>species</rdfs:label>
<rdfs:comment xml:lang="en">NCBI Taxonomy Ontology "NCBITaxon_1" (or sub-classes) instance that denotes the species for a feature set.</rdfs:comment>
<rdfs:range rdf:resource="&ncbi;NCBITaxon_1"/>
<rdfs:domain rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0001"/>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0068"/>
</owl:ObjectProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0034 -->
<owl:ObjectProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0034">
<rdfs:label>variant</rdfs:label>
<rdfs:comment xml:lang="en">Specific information about the variant(s) of a feature.</rdfs:comment>
<rdfs:domain rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0002"/>
<rdfs:range rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0033"/>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0066"/>
</owl:ObjectProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0036 -->
<owl:ObjectProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0036">
<rdfs:label>individual</rdfs:label>
<rdfs:comment xml:lang="en">Links to information about an individual.</rdfs:comment>
<rdfs:domain rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0002"/>
<rdfs:range rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0035"/>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0066"/>
</owl:ObjectProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0038 -->
<owl:ObjectProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0038">
<rdfs:label>zygosity</rdfs:label>
<rdfs:comment xml:lang="en">Zygosity of a variant.</rdfs:comment>
<rdfs:domain rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0033"/>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0069"/>
<rdfs:range rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0084"/>
</owl:ObjectProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0041 -->
<owl:ObjectProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0041">
<rdfs:label>effect</rdfs:label>
<rdfs:comment xml:lang="en">An effect of a particular feature variant.</rdfs:comment>
<rdfs:domain rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0033"/>
<rdfs:range rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0040"/>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0069"/>
</owl:ObjectProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0042 -->
<owl:ObjectProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0042">
<rdfs:label>sequence_variant</rdfs:label>
<rdfs:comment xml:lang="en">Effect of a sequence alteration on a sequence feature.</rdfs:comment>
<rdfs:domain rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0040"/>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0070"/>
<rdfs:range rdf:resource="&owl;Thing"/>
</owl:ObjectProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0043 -->
<owl:ObjectProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0043">
<rdfs:label>feature_type</rdfs:label>
<rdfs:comment xml:lang="en">A term that is describing the sequence feature that is being affected.</rdfs:comment>
<rdfs:domain rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0040"/>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0070"/>
<rdfs:range rdf:resource="&owl;Thing"/>
</owl:ObjectProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0046 -->
<owl:ObjectProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0046">
<rdfs:label>start_range</rdfs:label>
<rdfs:comment xml:lang="en">A coordinate range for ambiguous start coordinates.</rdfs:comment>
<rdfs:domain rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0040"/>
<rdfs:range rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0045"/>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0070"/>
</owl:ObjectProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0047 -->
<owl:ObjectProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0047">
<rdfs:label>end_range</rdfs:label>
<rdfs:comment xml:lang="en">A coordinate range for ambiguous start coordinates.</rdfs:comment>
<rdfs:domain rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0040"/>
<rdfs:range rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0045"/>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0070"/>
</owl:ObjectProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0051 -->
<owl:ObjectProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0051">
<rdfs:label>chromosome</rdfs:label>
<rdfs:comment xml:lang="en">Denotes abstract chromosome representations for capturing variants that appear on the same chromosome of a polyploid organism.</rdfs:comment>
<rdfs:domain rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0035"/>
<rdfs:range rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0052"/>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0067"/>
</owl:ObjectProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0053 -->
<owl:ObjectProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0053">
<rdfs:label>genotype</rdfs:label>
<rdfs:comment xml:lang="en">Determines the genotype as observed in an individual.</rdfs:comment>
<rdfs:domain rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0033"/>
<rdfs:range rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0052"/>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0069"/>
</owl:ObjectProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0066 -->
<owl:ObjectProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0066">
<rdfs:label>feature_properties</rdfs:label>
<rdfs:comment xml:lang="en">Properties that are directly associated with Feature class instances.</rdfs:comment>
</owl:ObjectProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0067 -->
<owl:ObjectProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0067">
<rdfs:label>sequencedindividual_properties</rdfs:label>
<rdfs:comment xml:lang="en">Properties that are directly associated with SequencedIndividual class instances.</rdfs:comment>
</owl:ObjectProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0068 -->
<owl:ObjectProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0068">
<rdfs:label>set_properties</rdfs:label>
<rdfs:comment xml:lang="en">Properties that are directly associated with Set class instances.</rdfs:comment>
</owl:ObjectProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0069 -->
<owl:ObjectProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0069">
<rdfs:label>variant_properties</rdfs:label>
<rdfs:comment xml:lang="en">Properties that are directly associated with Variant class instances.</rdfs:comment>
</owl:ObjectProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0070 -->
<owl:ObjectProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0070">
<rdfs:label>effect_properties</rdfs:label>
<rdfs:comment xml:lang="en">Properties that are directly associated with Effect class instances.</rdfs:comment>
</owl:ObjectProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0072 -->
<owl:ObjectProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0072">
<rdfs:label>seqid</rdfs:label>
<rdfs:comment xml:lang="en">Link to the landmark that establishes the coordinate system for the breakpoint.</rdfs:comment>
<rdfs:domain rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0058"/>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0075"/>
<rdfs:range rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0135"/>
</owl:ObjectProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0075 -->
<owl:ObjectProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0075">
<rdfs:label>breakpoint_properties</rdfs:label>
<rdfs:comment xml:lang="en">Properties that are directly associated with Breakpoint class instances.</rdfs:comment>
</owl:ObjectProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0078 -->
<owl:ObjectProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0078">
<rdfs:label>dbxref</rdfs:label>
<rdfs:comment xml:lang="en">A database cross-reference to associate a sequence alteration to its representation in another database.</rdfs:comment>
<rdfs:domain rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0002"/>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0066"/>
<rdfs:range rdf:resource="&owl;Thing"/>
</owl:ObjectProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0079 -->
<owl:ObjectProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0079">
<rdf:type rdf:resource="&owl;FunctionalProperty"/>
<rdfs:label>region</rdfs:label>
<rdfs:comment xml:lang="en">FALDO "Region" instance replacement for a breakpoint's start, stop, strand properties.</rdfs:comment>
<rdfs:range rdf:resource="&faldo;Region"/>
<rdfs:domain rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0058"/>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0075"/>
</owl:ObjectProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0080 -->
<owl:ObjectProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0080">
<rdfs:label>breakpoint</rdfs:label>
<rdfs:comment xml:lang="en">Potential source or destination of zero-length sequence alterations.</rdfs:comment>
<rdfs:domain rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0002"/>
<rdfs:range rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0058"/>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0066"/>
</owl:ObjectProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0083 -->
<owl:ObjectProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0083">
<rdf:type rdf:resource="&owl;FunctionalProperty"/>
<rdfs:label>strand</rdfs:label>
<rdfs:comment xml:lang="en">Strand of the breakpoint.</rdfs:comment>
<rdfs:range rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0016"/>
<rdfs:domain rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0058"/>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0075"/>
</owl:ObjectProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0089 -->
<owl:ObjectProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0089">
<rdfs:label>target_properties</rdfs:label>
<rdfs:comment xml:lang="en">Properties that are directly associated with Target class instances.</rdfs:comment>
</owl:ObjectProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0090 -->
<owl:ObjectProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0090">
<rdfs:label>region</rdfs:label>
<rdfs:comment xml:lang="en">FALDO "Region" instance replacement for a target's start, stop, strand properties.</rdfs:comment>
<rdfs:range rdf:resource="&faldo;Region"/>
<rdfs:domain rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0088"/>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0089"/>
</owl:ObjectProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0091 -->
<owl:ObjectProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0091">
<rdfs:label>strand</rdfs:label>
<rdfs:comment xml:lang="en">Strand of a target -- if applicable.</rdfs:comment>
<rdfs:range rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0016"/>
<rdfs:domain rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0088"/>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0089"/>
</owl:ObjectProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0102 -->
<owl:ObjectProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0102">
<rdfs:label>technologyplatform_properties</rdfs:label>
<rdfs:comment xml:lang="en">Properties that are directly associated with TechnologyPlatform class instances.</rdfs:comment>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0112"/>
</owl:ObjectProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0103 -->
<owl:ObjectProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0103">
<rdfs:label>datasource_properties</rdfs:label>
<rdfs:comment xml:lang="en">Properties that are directly associated with DataSource class instances.</rdfs:comment>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0112"/>
</owl:ObjectProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0104 -->
<owl:ObjectProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0104">
<rdfs:label>dbxref</rdfs:label>
<rdfs:comment xml:lang="en">A database cross-reference to associate a structured pragma to a representation in another database.</rdfs:comment>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0112"/>
<rdfs:range rdf:resource="&owl;Thing"/>
<rdfs:domain>
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
<rdf:Description rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0097"/>
<rdf:Description rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0098"/>
<rdf:Description rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0099"/>
<rdf:Description rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0100"/>
</owl:unionOf>
</owl:Class>
</rdfs:domain>
</owl:ObjectProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0112 -->
<owl:ObjectProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0112">
<rdfs:label>structuredpragma_properties</rdfs:label>
<rdfs:comment xml:lang="en">Properties describing structured pragma properties.</rdfs:comment>
</owl:ObjectProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0119 -->
<owl:ObjectProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0119">
<rdfs:label>read_type</rdfs:label>
<rdfs:comment xml:lang="en">Types of reads produced by the platform.</rdfs:comment>
<rdfs:domain rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0097"/>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0102"/>
<rdfs:range rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0109"/>
</owl:ObjectProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0120 -->
<owl:ObjectProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0120">
<rdfs:label>data_type</rdfs:label>
<rdfs:comment xml:lang="en">Datatype of this data source.</rdfs:comment>
<rdfs:domain rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0098"/>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0103"/>
<rdfs:range rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0114"/>
</owl:ObjectProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0121 -->
<owl:ObjectProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0121">
<rdfs:label>technology_platform</rdfs:label>
<rdfs:comment xml:lang="en">Technology platform that was used to derive the feature.</rdfs:comment>
<rdfs:domain rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0002"/>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0066"/>
<rdfs:range rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0097"/>
</owl:ObjectProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0122 -->
<owl:ObjectProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0122">
<rdfs:label>data_source</rdfs:label>
<rdfs:comment xml:lang="en">Data source origin of the feature.</rdfs:comment>
<rdfs:domain rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0002"/>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0066"/>
<rdfs:range rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0098"/>
</owl:ObjectProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0123 -->
<owl:ObjectProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0123">
<rdfs:label>score_method</rdfs:label>
<rdfs:comment xml:lang="en">Used scoring method.</rdfs:comment>
<rdfs:domain rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0002"/>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0066"/>
<rdfs:range rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0099"/>
</owl:ObjectProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0124 -->
<owl:ObjectProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0124">
<rdfs:label>source_method</rdfs:label>
<rdfs:comment xml:lang="en">Further information about the algorithm/methodologies used.</rdfs:comment>
<rdfs:domain rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0002"/>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0066"/>
<rdfs:range rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0099"/>
</owl:ObjectProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0125 -->
<owl:ObjectProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0125">
<rdfs:label>phenotype_description</rdfs:label>
<rdfs:comment xml:lang="en">Further information about an individual's phenotype. Applies only to single individual sets.</rdfs:comment>
<rdfs:domain rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0001"/>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0068"/>
<rdfs:range rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0100"/>
</owl:ObjectProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0126 -->
<owl:ObjectProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0126">
<rdfs:label>attribute_method</rdfs:label>
<rdfs:comment xml:lang="en">Further information about the associated attribute(s).</rdfs:comment>
<rdfs:domain rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0040"/>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0070"/>
<rdfs:range rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0099"/>
</owl:ObjectProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0127 -->
<owl:ObjectProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0127">
<rdfs:label>attribute_method</rdfs:label>
<rdfs:comment xml:lang="en">Further information about the associated attribute(s).</rdfs:comment>
<rdfs:domain rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0058"/>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0075"/>
<rdfs:range rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0099"/>
</owl:ObjectProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0128 -->
<owl:ObjectProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0128">
<rdfs:label>attribute_properties</rdfs:label>
<rdfs:comment xml:lang="en">Properties about Attribute instances.</rdfs:comment>
</owl:ObjectProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0129 -->
<owl:ObjectProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0129">
<rdfs:label>attribute_method</rdfs:label>
<rdfs:comment xml:lang="en">Further information about the associated attribute(s).</rdfs:comment>
<rdfs:domain rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0003"/>
<rdfs:range rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0099"/>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0128"/>
</owl:ObjectProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0130 -->
<owl:ObjectProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0130">
<rdfs:label>attribute_method</rdfs:label>
<rdfs:comment xml:lang="en">Further information about the associated attribute(s).</rdfs:comment>
<rdfs:domain rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0088"/>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0089"/>
<rdfs:range rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0099"/>
</owl:ObjectProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0131 -->
<owl:ObjectProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0131">
<rdfs:label>attribute_method</rdfs:label>
<rdfs:comment xml:lang="en">Further information about the associated attribute(s).</rdfs:comment>
<rdfs:domain rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0033"/>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0069"/>
<rdfs:range rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0099"/>
</owl:ObjectProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0147 -->
<owl:ObjectProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0147">
<rdfs:label>sex</rdfs:label>
<rdfs:comment xml:lang="en">Denotes the sex of the sequenced individual for single-individual sets.</rdfs:comment>
<rdfs:domain rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0001"/>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0068"/>
<rdfs:range rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0140"/>
</owl:ObjectProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0148 -->
<owl:ObjectProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0148">
<rdfs:label>genomic_source</rdfs:label>
<rdfs:comment xml:lang="en">Denotes the source of genomic data (on a cell-type level).</rdfs:comment>
<rdfs:domain rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0001"/>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0068"/>
<rdfs:range rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0141"/>
</owl:ObjectProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0150 -->
<owl:ObjectProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0150">
<rdfs:label>feature_ontology</rdfs:label>
<rdfs:comment xml:lang="en">Explicit link-out to one or more ontologies that have been used for describing features. This is a meta comment about the URIs that link out to SO/SOFA or other ontologies.</rdfs:comment>
<rdfs:domain rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0001"/>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0068"/>
<rdfs:range rdf:resource="&owl;Thing"/>
</owl:ObjectProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0152 -->
<owl:ObjectProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0152">
<rdfs:label>attributes</rdfs:label>
<rdfs:comment xml:lang="en">Tag name/value pair attributes that are not captured by the GVF specification.</rdfs:comment>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0112"/>
<rdfs:domain rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0151"/>
<rdfs:range>
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
<rdf:Description rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0097"/>
<rdf:Description rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0098"/>
<rdf:Description rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0099"/>
<rdf:Description rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0100"/>
</owl:unionOf>
</owl:Class>
</rdfs:range>
</owl:ObjectProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0155 -->
<owl:ObjectProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0155">
<rdfs:label>target</rdfs:label>
<rdfs:comment xml:lang="en">Identifies the target that the features aligns to.</rdfs:comment>
<rdfs:domain rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0002"/>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0066"/>
<rdfs:range rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0088"/>
</owl:ObjectProperty>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Data properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0005 -->
<owl:DatatypeProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0005">
<rdfs:label>source</rdfs:label>
<rdfs:comment xml:lang="en">A free text qualifier that describes the algorithm or operating procedure that generated this feature. For example, the name of the software that generated this feature or a database name.</rdfs:comment>
<rdfs:domain rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0002"/>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0059"/>
<rdfs:range>
<rdfs:Datatype>
<owl:onDatatype rdf:resource="&xsd;string"/>
<owl:withRestrictions rdf:parseType="Collection">
<rdf:Description>
<xsd:minLength rdf:datatype="&xsd;integer">1</xsd:minLength>
</rdf:Description>
</owl:withRestrictions>
</rdfs:Datatype>
</rdfs:range>
</owl:DatatypeProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0006 -->
<owl:DatatypeProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0006">
<rdfs:label>type</rdfs:label>
<rdfs:comment xml:lang="en">Type of the feature, which is either an entry the "lite" version of the Sequence Ontology (SOFA) or a child entry of sequence_feature (SO:0000110) of the full Sequence Ontology (SO).</rdfs:comment>
<rdfs:domain rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0002"/>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0059"/>
<rdfs:range>
<rdfs:Datatype>
<owl:onDatatype rdf:resource="&xsd;anyURI"/>
<owl:withRestrictions rdf:parseType="Collection">
<rdf:Description>
<xsd:pattern>http://www\.sequenceontology\.org/miso/current_release/term/.+</xsd:pattern>
</rdf:Description>
</owl:withRestrictions>
</rdfs:Datatype>
</rdfs:range>
</owl:DatatypeProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0007 -->
<owl:DatatypeProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0007">
<rdfs:label>start</rdfs:label>
<rdfs:comment xml:lang="en">Start coordinate of the feature on the seqid landmark.</rdfs:comment>
<rdfs:domain rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0002"/>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0059"/>
<rdfs:range>
<rdfs:Datatype>
<owl:onDatatype rdf:resource="&xsd;int"/>
<owl:withRestrictions rdf:parseType="Collection">
<rdf:Description>
<xsd:minInclusive rdf:datatype="&xsd;integer">1</xsd:minInclusive>
</rdf:Description>
</owl:withRestrictions>
</rdfs:Datatype>
</rdfs:range>
</owl:DatatypeProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0008 -->
<owl:DatatypeProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0008">
<rdfs:label>end</rdfs:label>
<rdfs:comment xml:lang="en">End coordinate of the feature on the seqid landmark.</rdfs:comment>
<rdfs:domain rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0002"/>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0059"/>
<rdfs:range>
<rdfs:Datatype>
<owl:onDatatype rdf:resource="&xsd;int"/>
<owl:withRestrictions rdf:parseType="Collection">
<rdf:Description>
<xsd:minInclusive rdf:datatype="&xsd;integer">1</xsd:minInclusive>
</rdf:Description>
</owl:withRestrictions>
</rdfs:Datatype>
</rdfs:range>
</owl:DatatypeProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0009 -->
<owl:DatatypeProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0009">
<rdfs:label>score</rdfs:label>
<rdfs:comment xml:lang="en">Score of the feature. For example, an E-value for sequence similarity features or a P-value for ab initio gene prediction features.</rdfs:comment>
<rdfs:domain rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0002"/>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0059"/>
<rdfs:range rdf:resource="&xsd;float"/>
</owl:DatatypeProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0013 -->
<owl:DatatypeProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0013">
<rdfs:label>tag</rdfs:label>
<rdfs:comment xml:lang="en">Tag name of a feature attribute.</rdfs:comment>
<rdfs:domain rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0003"/>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0064"/>
<rdfs:range>
<rdfs:Datatype>
<owl:onDatatype rdf:resource="&xsd;string"/>
<owl:withRestrictions rdf:parseType="Collection">
<rdf:Description>
<xsd:minLength rdf:datatype="&xsd;integer">1</xsd:minLength>
</rdf:Description>
</owl:withRestrictions>
</rdfs:Datatype>
</rdfs:range>
</owl:DatatypeProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0022 -->
<owl:DatatypeProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0022">
<rdfs:label>gvf_version</rdfs:label>
<rdfs:comment xml:lang="en">Version of the GVF specification that defines the feature set contents.</rdfs:comment>
<rdfs:domain rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0001"/>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0063"/>
<rdfs:range>
<rdfs:Datatype>
<owl:onDatatype rdf:resource="&xsd;float"/>
<owl:withRestrictions rdf:parseType="Collection">
<rdf:Description>
<xsd:minInclusive rdf:datatype="&xsd;float">1</xsd:minInclusive>
</rdf:Description>
<rdf:Description>
<xsd:maxExclusive rdf:datatype="&xsd;float">2</xsd:maxExclusive>
</rdf:Description>
</owl:withRestrictions>
</rdfs:Datatype>
</rdfs:range>
</owl:DatatypeProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0024 -->
<owl:DatatypeProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0024">
<rdfs:label>build</rdfs:label>
<rdfs:comment xml:lang="en">Name of a genome assembly build that denotes the provenance of features in a feature set. For example, 'NCBI 36' or 'FlyBase r4.1'.</rdfs:comment>
<rdfs:domain rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0001"/>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0063"/>
<rdfs:range>
<rdfs:Datatype>
<owl:onDatatype rdf:resource="&xsd;string"/>
<owl:withRestrictions rdf:parseType="Collection">
<rdf:Description>
<xsd:minLength rdf:datatype="&xsd;integer">1</xsd:minLength>
</rdf:Description>
</owl:withRestrictions>
</rdfs:Datatype>
</rdfs:range>
</owl:DatatypeProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0025 -->
<owl:DatatypeProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0025">
<rdfs:label>variant_seq</rdfs:label>
<rdfs:comment xml:lang="en">All sequence variations at a locus -- including the reference sequence when appropriate (for example, when the locus is heterozygous). If the feature is on the minus strand, then the sequence is the reverse-compliment of the reference genome for these coordinates.</rdfs:comment>
<rdfs:domain rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0033"/>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0060"/>
<rdfs:range>
<rdfs:Datatype>
<owl:onDatatype rdf:resource="&xsd;string"/>
<owl:withRestrictions rdf:parseType="Collection">
<rdf:Description>
<xsd:pattern>([ACGTUWSMKRYBDHVN\-]+|\~[0-9]*|\.|!|\^)</xsd:pattern>
</rdf:Description>
</owl:withRestrictions>
</rdfs:Datatype>
</rdfs:range>
</owl:DatatypeProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0026 -->
<owl:DatatypeProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0026">
<rdfs:label>id</rdfs:label>
<rdfs:comment xml:lang="en">A unique identifier for the feature within the feature set.</rdfs:comment>
<rdfs:domain rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0002"/>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0059"/>
<rdfs:range>
<rdfs:Datatype>
<owl:onDatatype rdf:resource="&xsd;string"/>
<owl:withRestrictions rdf:parseType="Collection">
<rdf:Description>
<xsd:minLength rdf:datatype="&xsd;integer">1</xsd:minLength>
</rdf:Description>
</owl:withRestrictions>
</rdfs:Datatype>
</rdfs:range>
</owl:DatatypeProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0027 -->
<owl:DatatypeProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0027">
<rdfs:label>alias</rdfs:label>
<rdfs:comment xml:lang="en">Secondary name of a feature, which can be HGVS/ISCN nomenclature names, but not cross-references to databases (e.g. dbSNP, OMIM) which should use the dbxref property.</rdfs:comment>
<rdfs:domain rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0002"/>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0059"/>
<rdfs:range>
<rdfs:Datatype>
<owl:onDatatype rdf:resource="&xsd;string"/>
<owl:withRestrictions rdf:parseType="Collection">
<rdf:Description>
<xsd:minLength rdf:datatype="&xsd;integer">1</xsd:minLength>
</rdf:Description>
</owl:withRestrictions>
</rdfs:Datatype>
</rdfs:range>
</owl:DatatypeProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0031 -->
<owl:DatatypeProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0031">
<rdfs:label>reference_seq</rdfs:label>
<rdfs:comment xml:lang="en">Sequence from the reference genome.</rdfs:comment>
<rdfs:domain rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0002"/>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0059"/>
<rdfs:range>
<rdfs:Datatype>
<owl:onDatatype rdf:resource="&xsd;string"/>
<owl:withRestrictions rdf:parseType="Collection">
<rdf:Description>
<xsd:pattern>([ACGTUWSMKRYBDHVN\-]+|\~[0-9]*|\.)</xsd:pattern>
</rdf:Description>
</owl:withRestrictions>
</rdfs:Datatype>
</rdfs:range>
</owl:DatatypeProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0032 -->
<owl:DatatypeProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0032">
<rdfs:label>variant_reads</rdfs:label>
<rdfs:comment xml:lang="en">Number of reads that are supporting this variant.</rdfs:comment>
<rdfs:domain rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0033"/>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0060"/>
<rdfs:range rdf:resource="&xsd;int"/>
</owl:DatatypeProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0037 -->
<owl:DatatypeProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0037">
<rdfs:label>total_reads</rdfs:label>
<rdfs:comment xml:lang="en">Total number of reads.</rdfs:comment>
<rdfs:domain rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0035"/>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0065"/>
<rdfs:range rdf:resource="&xsd;int"/>
</owl:DatatypeProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0039 -->
<owl:DatatypeProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0039">
<rdfs:label>variant_freq</rdfs:label>
<rdfs:comment xml:lang="en">Frequency of a variant in a population.</rdfs:comment>
<rdfs:domain rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0033"/>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0060"/>
<rdfs:range rdf:resource="&xsd;float"/>
</owl:DatatypeProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0044 -->
<owl:DatatypeProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0044">
<rdfs:label>feature</rdfs:label>
<rdfs:comment xml:lang="en">Features that are affected by this sequence alteration effect. This can be an external feature identifier, such as an Ensembl gene/transcript identifier.</rdfs:comment>
<rdfs:domain rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0040"/>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0158"/>
<rdfs:range>
<rdfs:Datatype>
<owl:onDatatype rdf:resource="&xsd;string"/>
<owl:withRestrictions rdf:parseType="Collection">
<rdf:Description>
<xsd:minLength rdf:datatype="&xsd;integer">1</xsd:minLength>
</rdf:Description>
</owl:withRestrictions>
</rdfs:Datatype>
</rdfs:range>
</owl:DatatypeProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0048 -->
<owl:DatatypeProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0048">
<rdfs:label>start</rdfs:label>
<rdfs:comment xml:lang="en">A coordinate that defines the start of an ambiguous coordinate range.</rdfs:comment>
<rdfs:domain rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0045"/>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0061"/>
<rdfs:range>
<rdfs:Datatype>
<owl:onDatatype rdf:resource="&xsd;int"/>
<owl:withRestrictions rdf:parseType="Collection">
<rdf:Description>
<xsd:minInclusive rdf:datatype="&xsd;integer">1</xsd:minInclusive>
</rdf:Description>
</owl:withRestrictions>
</rdfs:Datatype>
</rdfs:range>
</owl:DatatypeProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0049 -->
<owl:DatatypeProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0049">
<rdfs:label>end</rdfs:label>
<rdfs:comment xml:lang="en">A coordinate that defines the end of an ambiguous coordinate range.</rdfs:comment>
<rdfs:domain rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0045"/>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0061"/>
<rdfs:range>
<rdfs:Datatype>
<owl:onDatatype rdf:resource="&xsd;int"/>
<owl:withRestrictions rdf:parseType="Collection">
<rdf:Description>
<xsd:minInclusive rdf:datatype="&xsd;integer">1</xsd:minInclusive>
</rdf:Description>
</owl:withRestrictions>
</rdfs:Datatype>
</rdfs:range>
</owl:DatatypeProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0050 -->
<owl:DatatypeProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0050">
<rdfs:label>phased</rdfs:label>
<rdfs:comment xml:lang="en">Unclear from GVF specification.</rdfs:comment>
<rdfs:domain rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0033"/>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0060"/>
<rdfs:range>
<rdfs:Datatype>
<owl:onDatatype rdf:resource="&xsd;string"/>
<owl:withRestrictions rdf:parseType="Collection">
<rdf:Description>
<xsd:minLength rdf:datatype="&xsd;integer">1</xsd:minLength>
</rdf:Description>
</owl:withRestrictions>
</rdfs:Datatype>
</rdfs:range>
</owl:DatatypeProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0054 -->
<owl:DatatypeProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0054">
<rdfs:label>variant_codon</rdfs:label>
<rdfs:comment xml:lang="en">Describes the codon that overlaps this variant.</rdfs:comment>
<rdfs:domain rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0033"/>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0060"/>
<rdfs:range>
<rdfs:Datatype>
<owl:onDatatype rdf:resource="&xsd;string"/>
<owl:withRestrictions rdf:parseType="Collection">
<rdf:Description>
<xsd:pattern>([ACGT]{3})+</xsd:pattern>
</rdf:Description>
</owl:withRestrictions>
</rdfs:Datatype>
</rdfs:range>
</owl:DatatypeProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0055 -->
<owl:DatatypeProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0055">
<rdfs:label>reference_codon</rdfs:label>
<rdfs:comment xml:lang="en">Describes the codon from the reference sequence whose coordinates overlap with this variant.</rdfs:comment>
<rdfs:domain rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0002"/>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0059"/>
<rdfs:range>
<rdfs:Datatype>
<owl:onDatatype rdf:resource="&xsd;string"/>
<owl:withRestrictions rdf:parseType="Collection">
<rdf:Description>
<xsd:pattern>([ACGT]{3})+</xsd:pattern>
</rdf:Description>
</owl:withRestrictions>
</rdfs:Datatype>
</rdfs:range>
</owl:DatatypeProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0056 -->
<owl:DatatypeProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0056">
<rdfs:label>variant_aa</rdfs:label>
<rdfs:comment xml:lang="en">Amino acid that overlaps with the variant.</rdfs:comment>
<rdfs:domain rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0033"/>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0060"/>
<rdfs:range>
<rdfs:Datatype>
<owl:onDatatype rdf:resource="&xsd;string"/>
<owl:withRestrictions rdf:parseType="Collection">
<rdf:Description>
<xsd:pattern>[A-Z]</xsd:pattern>
</rdf:Description>
</owl:withRestrictions>
</rdfs:Datatype>
</rdfs:range>
</owl:DatatypeProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0057 -->
<owl:DatatypeProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0057">
<rdfs:label>reference_aa</rdfs:label>
<rdfs:comment xml:lang="en">Amino acid in the reference genome that overlaps with a variant's genome coordinates.</rdfs:comment>
<rdfs:domain rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0002"/>
<rdfs:subPropertyOf rdf:resource="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0059"/>
<rdfs:range>
<rdfs:Datatype>
<owl:onDatatype rdf:resource="&xsd;string"/>
<owl:withRestrictions rdf:parseType="Collection">
<rdf:Description>
<xsd:pattern>[A-Z]</xsd:pattern>
</rdf:Description>
</owl:withRestrictions>
</rdfs:Datatype>
</rdfs:range>
</owl:DatatypeProperty>
<!-- https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0059 -->
<owl:DatatypeProperty rdf:about="https://github.com/BioInterchange/Ontologies/gvf1o#GVF1_0059">
<rdfs:label>feature_properties</rdfs:label>
<rdfs:comment xml:lang="en">Properties that are directly associated with Feature class instances.</rdfs:comment>
</owl:DatatypeProperty>