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compilation error #843
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@Kim1230: Is |
The S1_netpyne-coreneuron mod files are available from https://github.com/suny-downstate-medical-center/S1_netpyne/tree/coreneuron. |
@iomaganaris : maybe you could provide response here? |
Some of the mod files' fixes for GPU execution and NEURON 8.2.0+ were missing from the mod file directory of this branch. I opened a PR to update them in suny-downstate-medical-center/S1_netpyne#4 |
Hello @Kim1230 , do you have any update on the status of your simulation? Did you manage to run it with CoreNEURON on GPU? |
I install neuron with coreneuron with GPU. And the configuration is below:
cmake: 3.16.8
nvhpc: 22.3/ cuda: 11.6
python: 3.8
But when I operate: nrnivmodl -coreneuron mod for the test: S1_netpyne-coreneuron. I got a problem:
Mod files: "mod/mod/ar_traub.mod" "mod/mod/cadad.mod" "mod/mod/CaDynamics_E2.mod" "mod/mod/cadyn.mod" "mod/mod/cagk.mod" "mod/mod/Ca_HVA.mod" "mod/mod/cal_mh.mod" "mod/mod/cal_mig.mod" "mod/mod/Ca_LVAst.mod" "mod/mod/Ca.mod" "mod/mod/cancr.mod" "mod/mod/canin.mod" "mod/mod/can_mig.mod" "mod/mod/catcb.mod" "mod/mod/cat_mig.mod" "mod/mod/cat_traub.mod" "mod/mod/ch_CavL.mod" "mod/mod/ch_CavN.mod" "mod/mod/ch_KCaS.mod" "mod/mod/ch_Kdrfastngf.mod" "mod/mod/ch_KvAngf.mod" "mod/mod/ch_KvCaB.mod" "mod/mod/ch_leak.mod" "mod/mod/ch_Navngf.mod" "mod/mod/DetAMPANMDA.mod" "mod/mod/DetGABAAB.mod" "mod/mod/gabab.mod" "mod/mod/h_BS.mod" "mod/mod/HCN1.mod" "mod/mod/HH2.mod" "mod/mod/h_harnett.mod" "mod/mod/hin.mod" "mod/mod/h_kole.mod" "mod/mod/h_migliore.mod" "mod/mod/htc.mod" "mod/mod/ican_sidi.mod" "mod/mod/iccr.mod" "mod/mod/IC.mod" "mod/mod/iconc_Ca.mod" "mod/mod/Ih.mod" "mod/mod/ikscr.mod" "mod/mod/IKsin.mod" "mod/mod/Im.mod" "mod/mod/IT2.mod" "mod/mod/IT.mod" "mod/mod/kap_BS.mod" "mod/mod/kapcb.mod" "mod/mod/kapin.mod" "mod/mod/kBK.mod" "mod/mod/kca.mod" "mod/mod/kctin.mod" "mod/mod/kdmc_BS.mod" "mod/mod/kdr_BS.mod" "mod/mod/kdrcr.mod" "mod/mod/kdrin.mod" "mod/mod/KdShu2007.mod" "mod/mod/kl.mod" "mod/mod/km.mod" "mod/mod/K_Pst.mod" "mod/mod/K_Tst.mod" "mod/mod/kv.mod" "mod/mod/MyExp2SynBB.mod" "mod/mod/my_exp2syn.mod" "mod/mod/MyExp2SynNMDABB.mod" "mod/mod/nafcr.mod" "mod/mod/nafx.mod" "mod/mod/Nap_Et2.mod" "mod/mod/nap_sidi.mod" "mod/mod/NaTa_t.mod" "mod/mod/NaTs2_t.mod" "mod/mod/nax_BS.mod" "mod/mod/naz.mod" "mod/mod/Nca.mod" "mod/mod/ProbAMPANMDA_EMS.mod" "mod/mod/ProbGABAAB_EMS.mod" "mod/mod/savedist.mod" "mod/mod/SK_E2.mod" "mod/mod/SKv3_1.mod" "mod/mod/StochKv_deterministic.mod" "mod/mod/StochKv.mod" "mod/mod/tia.mod" "mod/mod/vecstim.mod"
[INFO] Running: make -j4 -f /home/test/install/share/coreneuron/nrnivmodl_core_makefile ROOT=/home/yjy/test/install MODS_PATH=x86_64/corenrn/mod2c BUILD_TYPE=STATIC NRN_PRCELLSTATE=0
Default NMODL flags:
NVC++-W-1057-Static variables are not supported in acc routine - _ZZN54_INTERNAL_32_x86_64_corenrn_mod2c_StochKv_cpp_b3aebc776gammlnEdE3cof (x86_64/corenrn/mod2c/StochKv.cpp: 814)
NVC++-W-1057-Static variables are not supported in acc routine - _ZN54_INTERNAL_32_x86_64_corenrn_mod2c_StochKv_cpp_b3aebc7710coreneuron12_tmin_tratesE (x86_64/corenrn/mod2c/StochKv.cpp: 524)
NVC++-S-1058-Call to variadic function not supported - fprintf (x86_64/corenrn/mod2c/StochKv.cpp: 618)
NVC++/x86-64 Linux 22.3-0: compilation completed with severe errors
NVC++-W-1057-Static variables are not supported in acc routine - _ZN52_INTERNAL_30_x86_64_corenrn_mod2c_cadad_cpp_f440821310coreneuron7FARADAYE (x86_64/corenrn/mod2c/cadad.cpp: 291)
make: *** [/home/test/install/share/coreneuron/nrnivmodl_core_makefile:243: x86_64/corenrn/build/StochKv.o] Error 2
make: *** Waiting for unfinished jobs....
NVC++/x86-64 Linux 22.3-0: compilation completed with warnings
And the related code was:
$(CXX_COMPILE_CMD) -c $ < -o $@ -DNRN_PRCELLSTATE=$ (NRN_PRCELLSTATE) --diag_suppress=111,550 --diag_suppress=161,177
I don't know why it happens and how it can be fixed. Thanks!
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