Review all tests against 'testserver'

[c5sire]

√ | OK F W S | Context
√ | 3 | ts germplasm breedingmethods [0.9 s]
√ | 4 | ts germplasm breedingmethods details [0.4 s]
√ | 3 | ts calls [0.4 s]
√ | 3 | ts commoncropnames [0.4 s]
√ | 0 | ts crops
√ | 2 | ts genomemaps [0.3 s]
√ | 4 | ts genomemaps_data [0.5 s]
√ | 4 | ts genomemaps_data_range [0.5 s]
√ | 4 | ts genomemaps_details [0.5 s]
√ | 4 | ts germplasm_attributes [0.6 s]
√ | 4 | ts germplasm_details [0.6 s]
√ | 0 | ts germplasm_details_study
√ | 4 | ts germplasm_markerprofiles [0.6 s]
√ | 5 | ts germplasm_pedigree [0.6 s]
√ | 6 | ts germplasm_progeny [0.6 s]
√ | 4 | ts germplasm_search [0.7 s]
√ | 4 | ts germplasm_search_post [0.7 s]
√ | 6 | ts germplasm attributes [0.6 s]
√ | 1 | ts germplasmattributes_categories [0.1 s]
√ | 2 | ts locations [0.3 s]
√ | 5 | ts locations details [0.6 s]
√ | 1 | ts markerprofiles_allelematrices_search [0.2 s]
√ | 1 | ts markerprofiles_allelematrices_search_post [0.2 s]
√ | 1 | ts markerprofiles_allelematrices_details [0.1 s]
√ | 0 1 | ts markerprofiles_allelematrix_search

test_ts_markerprofiles_allelematrix_search.R:7: skip: Calls are present
Deprecated as of BrAPI version 1.2

/ | 0 | ts markerprofiles_detailsError in attr(out, "metadata") <- meta :
attempt to set an attribute on NULL
| | 2 1 | ts markerprofiles_detailsError in attr(out, "metadata") <- meta :
attempt to set an attribute on NULL
x | 2 2 | ts markerprofiles_details [0.5 s]

test_ts_markerprofiles_details.R:8: failure: are present
x isn't true.

test_ts_markerprofiles_details.R:21: failure: out formats work
x isn't true.

x | 0 1 | ts markerprofiles_search [0.2 s]

test_ts_markerprofiles_search.R:8: failure: Calls are present
x isn't true.

x | 0 1 | ts markers_details [0.1 s]

test_ts_markers_details.R:8: failure: Calls are present
x isn't true.

√ | 4 | ts markers_search [0.7 s]
√ | 4 | ts markers_search_post [0.6 s]
√ | 1 | ts observationvariables_datatypes [0.1 s]
√ | 4 | ts observationvariables [0.8 s]
√ | 5 | ts observationvariables_details [0.6 s]
√ | 1 | ts observationvariables_ontologies [0.1 s]
√ | 5 | ts observationvariables_search_post [0.7 s]
/ | 0 | ts phenotypes_search_postError : parse error: premature EOF

                 (right here) ------^

x | 1 1 | ts phenotypes_search_post [0.3 s]

test_ts_phenotypes_search_post.R:9: failure: are present
nrow(res) >= 154 isn't true.

√ | 2 | ts programs [0.3 s]
√ | 1 | ts programs_search_post [0.1 s]
√ | 2 | ts samples [0.3 s]
√ | 7 | ts samples_search [1.5 s]
x | 5 2 | ts samples_search_post [1.0 s]

test_ts_samples_search_post.R:13: failure: Samples are present
nrow(res) >= 3 isn't true.

test_ts_samples_search_post.R:25: failure: Samples are present
nrow(res) >= 3 isn't true.

√ | 4 | ts studies_details [0.6 s]
√ | 4 | ts studies_germplasm_details [0.6 s]
√ | 2 | ts studies_layout [0.3 s]
√ | 2 | ts studies_observationlevels [0.3 s]
x | 0 1 | ts studies_observations [0.8 s]

test_ts_studies_observations.R:8: failure: Studies_observations are present
nrow(res) == 10 isn't true.

√ | 0 2 | ts studies_observationunits

test_ts_studies_observationunits.R:7: skip: Studies_details are present
Under revision

test_ts_studies_observationunits.R:16: skip: Output is transformed
Under revision

√ | 1 | ts studies_observationunits_save [0.1 s]
√ | 4 | ts studies_observationvariables [0.8 s]
√ | 4 | ts studies_search_get - Test-server does not work? [0.7 s]
√ | 4 | ts studies_search_post - Test-server does not work? [0.6 s]
√ | 2 | ts studies_seasons [0.3 s]
√ | 2 | ts studies_studytypes [0.3 s]
√ | 0 1 | ts studies_table

test_ts_studies_table.R:7: skip: Studies_table are present
Not yet properly implemented.

√ | 3 | ts traits [0.5 s]
/ | 0 | ts traits_detailsError : $ operator is invalid for atomic vectors
x | 1 1 | ts traits_details [0.1 s]

test_ts_traits_details.R:8: failure: Traits_details are present
x isn't true.

√ | 3 | ts trials [0.5 s]
√ | 2 | ts trials_details [0.3 s]
√ | 2 | ts vendor_plates_details [0.3 s]
√ | 2 | ts vendor_plates_search [0.3 s]
√ | 2 | ts vendor_plates_search_post [0.3 s]
x | 0 1 | ts vendor_specifications [0.2 s]

test_ts_vendor_specifications.R:7: error: Vendor specifications are present
lexical error: invalid char in json text.
<!doctype html>
(right here) ------^
1: ba_vendor_specifications(con = con) at tests/testserver/test_ts_vendor_specifications.R:7
2: tryCatch({
resp <- brapiGET(url = callurl, con = con)
cont <- httr::content(x = resp, as = "text", encoding = "UTF-8")
out <- dat2tbl(cont, rclass, result_level = "result")
if (!is.null(out)) {
class(out) <- c(class(out), "ba_vendor_specifications")
}
return(out)
}) at C:/Users/rsimon/Documents/brapi/R/ba_vendor_specifications.R:23
3: tryCatchList(expr, classes, parentenv, handlers)
4: dat2tbl(cont, rclass, result_level = "result") at

[c5sire]

Many changes need: current version is 1.3. A total of 105 calls. Including new ones for images. Reorganized pathes, deprecated parameters, etc.