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config.json
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config.json
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{
"run": [
false,
false,
false
],
"crop": {
"threshold": 200
},
"stabilizer": {
"Transformation": "Translation",
"MAX_Pyramid_level": 1.0,
"update_coefficient": 0.90,
"MAX_iteration": 200,
"error_tolerance": 1E-7
},
"caiman": {
"mc_dict": {
"fnames": "",
"fr": 10,
"decay_time": 0.4,
"motion_correct": false,
"pw_rigid": false,
"max_shifts": [
5,
5
],
"gSig_filt": [
3,
3
],
"strides": [
48,
48
],
"overlaps": [
24,
24
],
"max_deviation_rigid": 3,
"border_nan": "copy"
},
"params_dict": {
"method_init": "corr_pnr",
"K": 6,
"gSig": [
3,
3
],
"gSiz": [
13,
13
],
"merge_thr": 0.85,
"p": 2,
"tsub": 2,
"ssub": 1,
"rf": 20,
"stride": 10,
"only_init": true,
"nb": 0,
"nb_patch": 0,
"method_deconvolution": "oasis",
"low_rank_background": null,
"update_background_components": true,
"min_corr": 0.9,
"min_pnr": 10,
"normalize_init": false,
"center_psf": true,
"ssub_B": 2,
"ring_size_factor": 1.4
}
}
}