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DESCRIPTION
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DESCRIPTION
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Package: noisyr
Type: Package
Title: Noise Quantification in High Throughput Sequencing Output
Version: 1.1.0
Authors@R: c(
person("Ilias", "Moutsopoulos", , "[email protected]", c("aut", "cre")),
person("Irina", "Mohorianu", , "[email protected]", role = c("aut","ctb")),
person("Hajk-Georg", "Drost", , "[email protected]", role="ctb"),
person("Elze", "Lauzikaite", , "[email protected]", role = "ctb")
)
Maintainer: Ilias Moutsopoulos <[email protected]>
Description: Quantifies and removes technical noise from high-throughput
sequencing data. Two approaches are used, one based on the count
matrix, and one using the alignment BAM files directly.
Contains several options for every step of the process, as well
as tools to quality check and assess the stability of output.
Depends: R (>= 3.1.2)
Imports:
utils,
grDevices,
tibble,
dplyr,
magrittr,
ggplot2,
preprocessCore,
IRanges,
GenomicRanges,
Rsamtools,
philentropy,
doParallel,
foreach
Suggests:
testthat,
roxygen2,
knitr,
rmarkdown
License: GPL-2
Encoding: UTF-8
URL: https://github.com/Core-Bioinformatics/noisyR
BugReports: https://github.com/Core-Bioinformatics/noisyR/issues
RoxygenNote: 7.1.1
VignetteBuilder: knitr