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resources_config.yaml
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resources_config.yaml
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database_name: Refseq_Ensembl
main_path: "/home/ocanal/Desktop/gene_isoforms/build_gene_transcript_db/db_uri/"
resources:
mane:
grch37:
file_path: ""
mock_file_path: ""
grch38:
refseq_file_path: "mane/MANE.GRCh38.v1.2.refseq_genomic.gff.gz"
ensembl_file_path: "mane/MANE.GRCh38.v1.2.ensembl_genomic.gff.gz"
mock_ensembl_file_path: "mane/mock.MANE.GRCh38.v1.2.ensembl_genomic.gff.gz"
mock_refseq_file_path: "mane/mock.MANE.GRCh38.v1.2.refseq_genomic.gff.gz"
gencode:
grch37:
file_path: "gencode/gencode.v44lift37.annotation.gff3.gz"
mock_file_path: "gencode/mock.gencode.v44lift37.annotation.gff3.gz"
grch38:
file_path: "gencode/gencode.v44.annotation.gff3.gz"
mock_file_path: "gencode/mock.gencode.v44.annotation.gff3.gz"
refseq:
grch37:
file_path: "refseq/GRCh37_latest_genomic.gff.gz"
mock_file_path: "refseq/mock.GRCh37_latest_genomic.gff.gz"
grch38:
file_path: "refseq/GRCh38_latest_genomic.gff.gz"
mock_file_path: "refseq/mock.GRCh38_latest_genomic.gff.gz"
lrg:
file_path: "lrg/list_LRGs_transcripts_xrefs.txt"
hugo:
file_path: "hugo/hgnc_complete_set.txt"