17-2 Work with a workflow via KNIME.ipynb

{"nbformat":4,"nbformat_minor":0,"metadata":{"colab":{"name":"17-2 Work with a workflow via KNIME.ipynb","provenance":[],"collapsed_sections":[],"authorship_tag":"ABX9TyMi1TXdQSrxVTwTkfto+CnR"},"kernelspec":{"name":"python3","display_name":"Python 3"}},"cells":[{"cell_type":"code","metadata":{"id":"Rz9hX1PztAdt"},"source":["# Work with a workflow via KNIME.exe\n","# author: Gressling, T\n","# license: MIT License # code: github.com/gressling/examples\n","# activity: single example # index: 17-2 "],"execution_count":null,"outputs":[]},{"cell_type":"code","metadata":{"id":"OWrSm-FutGzg"},"source":["import knime\n","knime.executable_path = \"KNIME_PATH/knime.exe\"\n","workspace = \"KNIME_PATH/KNIME workspaces/book\"\n","workflow = \"test_workflow\"\n","knime.Workflow(workflow_path=workflow, workspace_path=workspace)\n","# shows the workflow in the notebook!"],"execution_count":null,"outputs":[]},{"cell_type":"code","metadata":{"id":"xjGHUXhItJjq"},"source":["in = pd.DataFrame({'smiles':['COCc1cc(C=O)ccc1O']})"],"execution_count":null,"outputs":[]},{"cell_type":"code","metadata":{"id":"VtZ_U7LCtOVV"},"source":["with knime.Workflow(workflow_path=workflow,\n"," workspace_path=workspace) as KWorkflow:\n"," KWorkflow.data_table_inputs[0] = in\n"," KWorkflow.execute()"],"execution_count":null,"outputs":[]},{"cell_type":"code","metadata":{"id":"VPVRM-RutQVZ"},"source":["result=KWorkflow.data_table_outputs[0]"],"execution_count":null,"outputs":[]}]}