Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Running dropSeqPIpe on 10X data #106

Open
suminwei2772 opened this issue May 8, 2020 · 1 comment
Open

Running dropSeqPIpe on 10X data #106

suminwei2772 opened this issue May 8, 2020 · 1 comment

Comments

@suminwei2772
Copy link

Hi,
I am hoping to run dropSeqPipe on some 10X data (V1 chemistry).
I was wondering if I would need to supply a different adapters.fa file (not the default one that comes with dropSeqPipe) in this case? Would I need to make any other changes to the input files?
Thank you,
Lisa
@Hoohm
Copy link
Owner

Hoohm commented Jun 24, 2020

Hey @suminwei2772
I would check this github page, it will help out with any specifics linked to the V1 chemistry you need.

https://github.com/Teichlab/scg_lib_structs

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@Hoohm @suminwei2772