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dag.html
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<!--
~ Copyright 2013-2019, Centre for Genomic Regulation (CRG)
~
~ Licensed under the Apache License, Version 2.0 (the "License");
~ you may not use this file except in compliance with the License.
~ You may obtain a copy of the License at
~
~ http://www.apache.org/licenses/LICENSE-2.0
~
~ Unless required by applicable law or agreed to in writing, software
~ distributed under the License is distributed on an "AS IS" BASIS,
~ WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
~ See the License for the specific language governing permissions and
~ limitations under the License.
-->
<html>
<head>
<title>Nextflow Cytoscape.js with Dagre</title>
<meta name="viewport" content="width=device-width, user-scalable=no, initial-scale=1, maximum-scale=1">
<script type="text/javascript">
var prot = (("https:" == document.location.protocol) ? "https://" : "http://");
document.write(unescape("%3Cscript src='" + prot + "code.jquery.com/jquery-2.0.3.min.js' type='text/javascript' %3E%3C/script%3E"));
document.write(unescape("%3Cscript src='" + prot + "cdnjs.cloudflare.com/ajax/libs/cytoscape/2.6.12/cytoscape.min.js' type='text/javascript' %3E%3C/script%3E"));
document.write(unescape("%3Cscript src='" + prot + "cdn.rawgit.com/cpettitt/dagre/v0.7.4/dist/dagre.min.js' type='text/javascript' %3E%3C/script%3E"));
document.write(unescape("%3Cscript src='" + prot + "cdn.rawgit.com/cytoscape/cytoscape.js-dagre/1.1.2/cytoscape-dagre.js' type='text/javascript' %3E%3C/script%3E"));
</script>
<style>
body {
font-family: helvetica;
font-size: 14px;
}
#cy {
width: 100%;
height: 100%;
position: absolute;
left: 0;
top: 0;
z-index: 999;
}
h1 {
opacity: 0.5;
font-size: 1em;
}
</style>
<script>
$(function(){
var cy = window.cy = cytoscape({
container: document.getElementById('cy'),
boxSelectionEnabled: false,
autounselectify: true,
layout: {
name: 'dagre'
},
style: cytoscape.stylesheet()
.selector( 'node')
.css({
'width': 10,
'height': 10,
'content': 'data(label)',
'text-valign': 'center',
'text-halign': 'center',
'text-opacity': 0.5,
})
.selector('node.PROCESS')
.css({
'width': 100,
'height': 50,
'text-opacity': 0.9,
'background-color': '#009911'
})
.selector('node.OPERATOR')
.css({
'background-color': '#11479e',
'text-halign': 'right',
})
.selector('node.ORIGIN')
.css({
'background-color': '#999999',
'text-halign': 'right',
})
.selector('node.TERMINATION')
.css({
'background-color': '#999999',
'text-halign': 'right',
})
.selector('edge')
.css({
'content': 'data(label)',
'text-opacity': 0.5,
'width': 4,
'target-arrow-shape': 'triangle',
'line-color': '#9dbaea',
'target-arrow-color': '#9dbaea'
}),
elements: {
nodes: [
{ data: { id: 'p0', label: 'Channel.fromPath'}, classes: 'ORIGIN' },
{ data: { id: 'p1', label: 'splitCsv'}, classes: 'OPERATOR' },
{ data: { id: 'p2', label: 'map'}, classes: 'OPERATOR' },
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{ data: { id: 'p4', label: 'splitCsv'}, classes: 'OPERATOR' },
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{ data: { id: 'p9', label: 'groupTuple'}, classes: 'OPERATOR' },
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{ data: { id: 'p19', label: 'bed'}, classes: 'PROCESS' },
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{ data: { id: 'p35', label: 'count'}, classes: 'OPERATOR' },
{ data: { id: 'p36'}, classes: 'NODE' },
{ data: { id: 'p37', label: 'groupTuple'}, classes: 'OPERATOR' },
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{ data: { id: 'p40', label: 'groupTuple'}, classes: 'OPERATOR' },
{ data: { id: 'p41', label: 'ReadOrientationLearn'}, classes: 'PROCESS' },
{ data: { id: 'p42', label: 'join'}, classes: 'OPERATOR' },
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{ data: { id: 'p53', label: 'map'}, classes: 'OPERATOR' },
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{ data: { id: 'p55', label: 'map'}, classes: 'OPERATOR' },
{ data: { id: 'p56', label: 'subscribe'}, classes: 'OPERATOR' },
{ data: { id: 'p57', label: 'ContaminationEstimation'}, classes: 'PROCESS' },
{ data: { id: 'p58', label: 'join'}, classes: 'OPERATOR' },
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{ data: { id: 'p60'}, classes: 'ORIGIN' },
{ data: { id: 'p61'}, classes: 'ORIGIN' },
{ data: { id: 'p62'}, classes: 'ORIGIN' },
{ data: { id: 'p63', label: 'FilterMuTectOutputs'}, classes: 'PROCESS' },
{ data: { id: 'p64', label: 'FilterMuTectOutputsOnPass'}, classes: 'PROCESS' },
{ data: { id: 'p65'}, classes: 'NODE' },
],
edges: [
{ data: { source: 'p0', target: 'p1'} },
{ data: { source: 'p1', target: 'p2'} },
{ data: { source: 'p2', target: 'p9', label: 'pairs' } },
{ data: { source: 'p3', target: 'p4'} },
{ data: { source: 'p4', target: 'p5'} },
{ data: { source: 'p5', target: 'p6', label: 'pairs2' } },
{ data: { source: 'p6', target: 'p7'} },
{ data: { source: 'p7', target: 'p8', label: 'tn_bambai2' } },
{ data: { source: 'p9', target: 'p10'} },
{ data: { source: 'p10', target: 'p23', label: 'tn_bambai' } },
{ data: { source: 'p11', target: 'p12'} },
{ data: { source: 'p12', target: 'p13'} },
{ data: { source: 'p13', target: 'p18', label: 'pairsT4cont' } },
{ data: { source: 'p14', target: 'p15'} },
{ data: { source: 'p15', target: 'p16'} },
{ data: { source: 'p16', target: 'p17'} },
{ data: { source: 'p17', target: 'p18', label: 'pairsN4cont' } },
{ data: { source: 'p18', target: 'p48', label: 'pairs4cont' } },
{ data: { source: 'p19', target: 'p20', label: 'outbed' } },
{ data: { source: 'p20', target: 'p21', label: 'split_bed' } },
{ data: { source: 'p20', target: 'p35', label: 'count_split_bed' } },
{ data: { source: 'p22', target: 'p23', label: 'split_bed1' } },
{ data: { source: 'p23', target: 'p34'} },
{ data: { source: 'p24', target: 'p34', label: 'fasta_ref' } },
{ data: { source: 'p25', target: 'p34', label: 'fasta_ref_fai' } },
{ data: { source: 'p26', target: 'p34', label: 'fasta_ref_dict' } },
{ data: { source: 'p27', target: 'p34', label: 'PON' } },
{ data: { source: 'p28', target: 'p34', label: 'PON_tbi' } },
{ data: { source: 'p29', target: 'p34', label: 'jar2' } },
{ data: { source: 'p30', target: 'p34', label: 'jar' } },
{ data: { source: 'p31', target: 'p34', label: 'known_snp' } },
{ data: { source: 'p32', target: 'p34', label: 'known_snp_tbi' } },
{ data: { source: 'p33', target: 'p34', label: 'cosmic' } },
{ data: { source: 'p34', target: 'p37', label: 'mutect_output1' } },
{ data: { source: 'p34', target: 'p38', label: 'mutect_output2' } },
{ data: { source: 'p34', target: 'p40', label: 'f1r2' } },
{ data: { source: 'p35', target: 'p36'} },
{ data: { source: 'p37', target: 'p39'} },
{ data: { source: 'p38', target: 'p39'} },
{ data: { source: 'p39', target: 'p42', label: 'res_merged' } },
{ data: { source: 'p40', target: 'p41'} },
{ data: { source: 'p41', target: 'p42', label: 'ROmodel' } },
{ data: { source: 'p42', target: 'p58', label: 'res_merged_RO' } },
{ data: { source: 'p43', target: 'p48', label: 'fasta_ref' } },
{ data: { source: 'p44', target: 'p48', label: 'fasta_ref_fai' } },
{ data: { source: 'p45', target: 'p48', label: 'fasta_ref_dict' } },
{ data: { source: 'p46', target: 'p48', label: 'snp_contam' } },
{ data: { source: 'p47', target: 'p48', label: 'snp_contam_tbi' } },
{ data: { source: 'p48', target: 'p49', label: 'pileups' } },
{ data: { source: 'p49', target: 'p50', label: 'pileupsN0' } },
{ data: { source: 'p49', target: 'p51', label: 'pileupsT0' } },
{ data: { source: 'p50', target: 'p52', label: 'pileupsN' } },
{ data: { source: 'p50', target: 'p54', label: 'pileupsN4pr' } },
{ data: { source: 'p51', target: 'p54', label: 'pileupsT4pr' } },
{ data: { source: 'p51', target: 'p52', label: 'pileupsT' } },
{ data: { source: 'p52', target: 'p53'} },
{ data: { source: 'p53', target: 'p57', label: 'pileups4cont' } },
{ data: { source: 'p54', target: 'p55'} },
{ data: { source: 'p55', target: 'p56', label: 'pileups4contpr' } },
{ data: { source: 'p57', target: 'p58', label: 'contam' } },
{ data: { source: 'p58', target: 'p63', label: 'res_merged_RO_contam' } },
{ data: { source: 'p59', target: 'p63', label: 'fasta_ref' } },
{ data: { source: 'p60', target: 'p63', label: 'fasta_ref_fai' } },
{ data: { source: 'p61', target: 'p63', label: 'fasta_ref_gzi' } },
{ data: { source: 'p62', target: 'p63', label: 'fasta_ref_dict' } },
{ data: { source: 'p63', target: 'p64', label: 'res_filtered' } },
{ data: { source: 'p64', target: 'p65', label: 'res_filtered_PASS' } },
],
},
});
});
</script>
</head>
<body>
<h1>Nextflow Cytoscape.js with Dagre</h1>
<div id="cy"></div>
</body>
</html>