sudo apt-get install build-essential
sudo apt-get install python-dev
sudo apt-get install perl
- Perl modules:
Parallel::ForkManager (>= v0.7.5)
Math::Round (>= v0.06)
Spreadsheet::WriteExcel (v2.40)
These modules can be installed through CPAN
sudo apt-get install cpan
cpan
nolock_cpan[1]> install Module::Name
sudo apt-get install r-base r-base-dev
- R packages
getopt (v1.20.0)
lsa (v0.73.1)
ggplot2 (v1.0.1)
reshape (>= v0.8.5)
NMF (v0.20.6)
gplots (>= 2.17.0)
gtable (>= v0.1.2)
scales (>= 0.2.5)
gridExtra (0.9.1)
These packages can be installed in R:
install.packages(https://cran.r-project.org/src/contrib/package_1.1.tar.gz, repos=NULL, type="source")
sudo pip install weblogo
The latest release can be downloaded at http://www.openbioinformatics.org/annovar/annovar_download_form.php after free registration.