Reorganize file structure

[JMTK]

Problem

Due to everything being in Program.cs, we are almost always going to receive merge conflicts on file changes.

Solution

Split out by function:

• Logging (should be resolved by Added logger and added color handling for the different types of messages #11)
• Command Line Options
• Adding apps to the Sunshine config
• More?

[BigBrainAFK]

Merge conflicts dont stem from everything being in 1 file but usually because a PR isnt rebased onto the branch you want to PR into.