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2-2.evaluating_GetOrganelle_plastomes.sh
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2-2.evaluating_GetOrganelle_plastomes.sh
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cd GetOrganelle-plastome
evaluate_assembly_using_mapping.py -1 ../ERR1917165_1.fastq.gz -2 ../ERR1917165_2.fastq.gz -o auto--ERR1917165-plastome/auto--ERR1917165-plastome--evaluated -f auto--ERR1917165-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title ERR1917165-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../ERR2206741_1.fastq.gz -2 ../ERR2206741_2.fastq.gz -o auto--ERR2206741-plastome/auto--ERR2206741-plastome--evaluated -f auto--ERR2206741-plastome/embplant_pt.K91.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title ERR2206741-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 Result status: 2 contig(s)"
evaluate_assembly_using_mapping.py -1 ../ERR268390_1.fastq.gz -2 ../ERR268390_2.fastq.gz -o auto--ERR268390-plastome/auto--ERR268390-plastome--evaluated -f auto--ERR268390-plastome/embplant_pt.K91.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title ERR268390-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../ERR964904_1.fastq.gz -2 ../ERR964904_2.fastq.gz -o auto--ERR964904-plastome/auto--ERR964904-plastome--evaluated -f auto--ERR964904-plastome/embplant_pt.K91.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title ERR964904-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 Result status: 8 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR1145775_1.fastq.gz -2 ../SRR1145775_2.fastq.gz -o auto--SRR1145775-plastome/auto--SRR1145775-plastome--evaluated -f auto--SRR1145775-plastome/embplant_pt.K91.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR1145775-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR2037123_1.fastq.gz -2 ../SRR2037123_2.fastq.gz -o auto--SRR2037123-plastome/auto--SRR2037123-plastome--evaluated -f auto--SRR2037123-plastome/embplant_pt.K91.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR2037123-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR2057084_1.fastq.gz -2 ../SRR2057084_2.fastq.gz -o auto--SRR2057084-plastome/auto--SRR2057084-plastome--evaluated -f auto--SRR2057084-plastome/embplant_pt.K91.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR2057084-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 Result status: 14 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR4428742_1.fastq.gz -2 ../SRR4428742_2.fastq.gz -o auto--SRR4428742-plastome/auto--SRR4428742-plastome--evaluated -f auto--SRR4428742-plastome/embplant_pt.K91.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR4428742-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5028199_1.fastq.gz -2 ../SRR5028199_2.fastq.gz -o auto--SRR5028199-plastome/auto--SRR5028199-plastome--evaluated -f auto--SRR5028199-plastome/embplant_pt.K91.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5028199-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602572_1.fastq.gz -2 ../SRR5602572_2.fastq.gz -o auto--SRR5602572-plastome/auto--SRR5602572-plastome--evaluated -f auto--SRR5602572-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602572-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602573_1.fastq.gz -2 ../SRR5602573_2.fastq.gz -o auto--SRR5602573-plastome/auto--SRR5602573-plastome--evaluated -f auto--SRR5602573-plastome/embplant_pt.K91.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602573-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 Result status: 4 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR5602574_1.fastq.gz -2 ../SRR5602574_2.fastq.gz -o auto--SRR5602574-plastome/auto--SRR5602574-plastome--evaluated -f auto--SRR5602574-plastome/embplant_pt.K127.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602574-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 Result status: 4 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR5602575_1.fastq.gz -2 ../SRR5602575_2.fastq.gz -o auto--SRR5602575-plastome/auto--SRR5602575-plastome--evaluated -f auto--SRR5602575-plastome/embplant_pt.K127.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602575-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR5602576_1.fastq.gz -2 ../SRR5602576_2.fastq.gz -o auto--SRR5602576-plastome/auto--SRR5602576-plastome--evaluated -f auto--SRR5602576-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602576-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602577_1.fastq.gz -2 ../SRR5602577_2.fastq.gz -o auto--SRR5602577-plastome/auto--SRR5602577-plastome--evaluated -f auto--SRR5602577-plastome/embplant_pt.K127.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602577-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR5602578_1.fastq.gz -2 ../SRR5602578_2.fastq.gz -o auto--SRR5602578-plastome/auto--SRR5602578-plastome--evaluated -f auto--SRR5602578-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602578-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602579_1.fastq.gz -2 ../SRR5602579_2.fastq.gz -o auto--SRR5602579-plastome/auto--SRR5602579-plastome--evaluated -f auto--SRR5602579-plastome/embplant_pt.K127.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602579-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR5602581_1.fastq.gz -2 ../SRR5602581_2.fastq.gz -o auto--SRR5602581-plastome/auto--SRR5602581-plastome--evaluated -f auto--SRR5602581-plastome/embplant_pt.K127.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602581-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR5602582_1.fastq.gz -2 ../SRR5602582_2.fastq.gz -o auto--SRR5602582-plastome/auto--SRR5602582-plastome--evaluated -f auto--SRR5602582-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602582-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602583_1.fastq.gz -2 ../SRR5602583_2.fastq.gz -o auto--SRR5602583-plastome/auto--SRR5602583-plastome--evaluated -f auto--SRR5602583-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602583-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602584_1.fastq.gz -2 ../SRR5602584_2.fastq.gz -o auto--SRR5602584-plastome/auto--SRR5602584-plastome--evaluated -f auto--SRR5602584-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602584-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602585_1.fastq.gz -2 ../SRR5602585_2.fastq.gz -o auto--SRR5602585-plastome/auto--SRR5602585-plastome--evaluated -f auto--SRR5602585-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602585-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602586_1.fastq.gz -2 ../SRR5602586_2.fastq.gz -o auto--SRR5602586-plastome/auto--SRR5602586-plastome--evaluated -f auto--SRR5602586-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602586-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602587_1.fastq.gz -2 ../SRR5602587_2.fastq.gz -o auto--SRR5602587-plastome/auto--SRR5602587-plastome--evaluated -f auto--SRR5602587-plastome/embplant_pt.K91.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602587-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602588_1.fastq.gz -2 ../SRR5602588_2.fastq.gz -o auto--SRR5602588-plastome/auto--SRR5602588-plastome--evaluated -f auto--SRR5602588-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602588-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602589_1.fastq.gz -2 ../SRR5602589_2.fastq.gz -o auto--SRR5602589-plastome/auto--SRR5602589-plastome--evaluated -f auto--SRR5602589-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602589-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602590_1.fastq.gz -2 ../SRR5602590_2.fastq.gz -o auto--SRR5602590-plastome/auto--SRR5602590-plastome--evaluated -f auto--SRR5602590-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602590-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602591_1.fastq.gz -2 ../SRR5602591_2.fastq.gz -o auto--SRR5602591-plastome/auto--SRR5602591-plastome--evaluated -f auto--SRR5602591-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602591-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602592_1.fastq.gz -2 ../SRR5602592_2.fastq.gz -o auto--SRR5602592-plastome/auto--SRR5602592-plastome--evaluated -f auto--SRR5602592-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602592-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602593_1.fastq.gz -2 ../SRR5602593_2.fastq.gz -o auto--SRR5602593-plastome/auto--SRR5602593-plastome--evaluated -f auto--SRR5602593-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602593-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602594_1.fastq.gz -2 ../SRR5602594_2.fastq.gz -o auto--SRR5602594-plastome/auto--SRR5602594-plastome--evaluated -f auto--SRR5602594-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602594-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602595_1.fastq.gz -2 ../SRR5602595_2.fastq.gz -o auto--SRR5602595-plastome/auto--SRR5602595-plastome--evaluated -f auto--SRR5602595-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602595-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602596_1.fastq.gz -2 ../SRR5602596_2.fastq.gz -o auto--SRR5602596-plastome/auto--SRR5602596-plastome--evaluated -f auto--SRR5602596-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602596-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602597_1.fastq.gz -2 ../SRR5602597_2.fastq.gz -o auto--SRR5602597-plastome/auto--SRR5602597-plastome--evaluated -f auto--SRR5602597-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602597-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602598_1.fastq.gz -2 ../SRR5602598_2.fastq.gz -o auto--SRR5602598-plastome/auto--SRR5602598-plastome--evaluated -f auto--SRR5602598-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602598-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602599_1.fastq.gz -2 ../SRR5602599_2.fastq.gz -o auto--SRR5602599-plastome/auto--SRR5602599-plastome--evaluated -f auto--SRR5602599-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602599-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602600_1.fastq.gz -2 ../SRR5602600_2.fastq.gz -o auto--SRR5602600-plastome/auto--SRR5602600-plastome--evaluated -f auto--SRR5602600-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602600-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602601_1.fastq.gz -2 ../SRR5602601_2.fastq.gz -o auto--SRR5602601-plastome/auto--SRR5602601-plastome--evaluated -f auto--SRR5602601-plastome/embplant_pt.K127.complete.graph1.1.repeat_pattern1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602601-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602602_1.fastq.gz -2 ../SRR5602602_2.fastq.gz -o auto--SRR5602602-plastome/auto--SRR5602602-plastome--evaluated -f auto--SRR5602602-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602602-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602603_1.fastq.gz -2 ../SRR5602603_2.fastq.gz -o auto--SRR5602603-plastome/auto--SRR5602603-plastome--evaluated -f auto--SRR5602603-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602603-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602604_1.fastq.gz -2 ../SRR5602604_2.fastq.gz -o auto--SRR5602604-plastome/auto--SRR5602604-plastome--evaluated -f auto--SRR5602604-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602604-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602605_1.fastq.gz -2 ../SRR5602605_2.fastq.gz -o auto--SRR5602605-plastome/auto--SRR5602605-plastome--evaluated -f auto--SRR5602605-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602605-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602606_1.fastq.gz -2 ../SRR5602606_2.fastq.gz -o auto--SRR5602606-plastome/auto--SRR5602606-plastome--evaluated -f auto--SRR5602606-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602606-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602607_1.fastq.gz -2 ../SRR5602607_2.fastq.gz -o auto--SRR5602607-plastome/auto--SRR5602607-plastome--evaluated -f auto--SRR5602607-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602607-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602608_1.fastq.gz -2 ../SRR5602608_2.fastq.gz -o auto--SRR5602608-plastome/auto--SRR5602608-plastome--evaluated -f auto--SRR5602608-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602608-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602609_1.fastq.gz -2 ../SRR5602609_2.fastq.gz -o auto--SRR5602609-plastome/auto--SRR5602609-plastome--evaluated -f auto--SRR5602609-plastome/embplant_pt.K127.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602609-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR5602610_1.fastq.gz -2 ../SRR5602610_2.fastq.gz -o auto--SRR5602610-plastome/auto--SRR5602610-plastome--evaluated -f auto--SRR5602610-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602610-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR6478596_1.fastq.gz -2 ../SRR6478596_2.fastq.gz -o auto--SRR6478596-plastome/auto--SRR6478596-plastome--evaluated -f auto--SRR6478596-plastome/embplant_pt.K91.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR6478596-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 Result status: 2 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR6932851_1.fastq.gz -2 ../SRR6932851_2.fastq.gz -o auto--SRR6932851-plastome/auto--SRR6932851-plastome--evaluated -f auto--SRR6932851-plastome/embplant_pt.K91.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR6932851-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR7630500_1.fastq.gz -2 ../SRR7630500_2.fastq.gz -o auto--SRR7630500-plastome/auto--SRR7630500-plastome--evaluated -f auto--SRR7630500-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR7630500-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../ERR1917165_1.fastq.gz -2 ../ERR1917165_2.fastq.gz -o w0.60--ERR1917165-plastome/w0.60--ERR1917165-plastome--evaluated -f w0.60--ERR1917165-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title ERR1917165-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.60 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../ERR2206741_1.fastq.gz -2 ../ERR2206741_2.fastq.gz -o w0.60--ERR2206741-plastome/w0.60--ERR2206741-plastome--evaluated -f w0.60--ERR2206741-plastome/embplant_pt.K91.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title ERR2206741-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.60 Result status: 2 contig(s)"
evaluate_assembly_using_mapping.py -1 ../ERR268390_1.fastq.gz -2 ../ERR268390_2.fastq.gz -o w0.60--ERR268390-plastome/w0.60--ERR268390-plastome--evaluated -f w0.60--ERR268390-plastome/embplant_pt.K91.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title ERR268390-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.60 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../ERR964904_1.fastq.gz -2 ../ERR964904_2.fastq.gz -o w0.60--ERR964904-plastome/w0.60--ERR964904-plastome--evaluated -f w0.60--ERR964904-plastome/embplant_pt.K91.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title ERR964904-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.60 Result status: 8 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR1145775_1.fastq.gz -2 ../SRR1145775_2.fastq.gz -o w0.60--SRR1145775-plastome/w0.60--SRR1145775-plastome--evaluated -f w0.60--SRR1145775-plastome/embplant_pt.K91.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR1145775-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.60 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR2037123_1.fastq.gz -2 ../SRR2037123_2.fastq.gz -o w0.60--SRR2037123-plastome/w0.60--SRR2037123-plastome--evaluated -f w0.60--SRR2037123-plastome/embplant_pt.K91.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR2037123-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.60 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR2057084_1.fastq.gz -2 ../SRR2057084_2.fastq.gz -o w0.60--SRR2057084-plastome/w0.60--SRR2057084-plastome--evaluated -f w0.60--SRR2057084-plastome/embplant_pt.K91.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR2057084-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.60 Result status: 13 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR4428742_1.fastq.gz -2 ../SRR4428742_2.fastq.gz -o w0.60--SRR4428742-plastome/w0.60--SRR4428742-plastome--evaluated -f w0.60--SRR4428742-plastome/embplant_pt.K91.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR4428742-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.60 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5028199_1.fastq.gz -2 ../SRR5028199_2.fastq.gz -o w0.60--SRR5028199-plastome/w0.60--SRR5028199-plastome--evaluated -f w0.60--SRR5028199-plastome/embplant_pt.K91.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5028199-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.60 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602572_1.fastq.gz -2 ../SRR5602572_2.fastq.gz -o w0.60--SRR5602572-plastome/w0.60--SRR5602572-plastome--evaluated -f w0.60--SRR5602572-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602572-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.60 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602573_1.fastq.gz -2 ../SRR5602573_2.fastq.gz -o w0.60--SRR5602573-plastome/w0.60--SRR5602573-plastome--evaluated -f w0.60--SRR5602573-plastome/embplant_pt.K127.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602573-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.60 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR5602574_1.fastq.gz -2 ../SRR5602574_2.fastq.gz -o w0.60--SRR5602574-plastome/w0.60--SRR5602574-plastome--evaluated -f w0.60--SRR5602574-plastome/embplant_pt.K127.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602574-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.60 Result status: 4 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR5602575_1.fastq.gz -2 ../SRR5602575_2.fastq.gz -o w0.60--SRR5602575-plastome/w0.60--SRR5602575-plastome--evaluated -f w0.60--SRR5602575-plastome/embplant_pt.K127.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602575-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.60 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR5602576_1.fastq.gz -2 ../SRR5602576_2.fastq.gz -o w0.60--SRR5602576-plastome/w0.60--SRR5602576-plastome--evaluated -f w0.60--SRR5602576-plastome/embplant_pt.K127.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602576-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.60 Result status: 2 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR5602577_1.fastq.gz -2 ../SRR5602577_2.fastq.gz -o w0.60--SRR5602577-plastome/w0.60--SRR5602577-plastome--evaluated -f w0.60--SRR5602577-plastome/embplant_pt.K127.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602577-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.60 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR5602578_1.fastq.gz -2 ../SRR5602578_2.fastq.gz -o w0.60--SRR5602578-plastome/w0.60--SRR5602578-plastome--evaluated -f w0.60--SRR5602578-plastome/embplant_pt.K127.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602578-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.60 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR5602579_1.fastq.gz -2 ../SRR5602579_2.fastq.gz -o w0.60--SRR5602579-plastome/w0.60--SRR5602579-plastome--evaluated -f w0.60--SRR5602579-plastome/embplant_pt.K127.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602579-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.60 Result status: 5 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR5602581_1.fastq.gz -2 ../SRR5602581_2.fastq.gz -o w0.60--SRR5602581-plastome/w0.60--SRR5602581-plastome--evaluated -f w0.60--SRR5602581-plastome/embplant_pt.K127.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602581-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.60 Result status: 2 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR5602582_1.fastq.gz -2 ../SRR5602582_2.fastq.gz -o w0.60--SRR5602582-plastome/w0.60--SRR5602582-plastome--evaluated -f w0.60--SRR5602582-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602582-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.60 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602583_1.fastq.gz -2 ../SRR5602583_2.fastq.gz -o w0.60--SRR5602583-plastome/w0.60--SRR5602583-plastome--evaluated -f w0.60--SRR5602583-plastome/embplant_pt.K127.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602583-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.60 Result status: 2 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR5602584_1.fastq.gz -2 ../SRR5602584_2.fastq.gz -o w0.60--SRR5602584-plastome/w0.60--SRR5602584-plastome--evaluated -f w0.60--SRR5602584-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602584-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.60 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602585_1.fastq.gz -2 ../SRR5602585_2.fastq.gz -o w0.60--SRR5602585-plastome/w0.60--SRR5602585-plastome--evaluated -f w0.60--SRR5602585-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602585-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.60 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602586_1.fastq.gz -2 ../SRR5602586_2.fastq.gz -o w0.60--SRR5602586-plastome/w0.60--SRR5602586-plastome--evaluated -f w0.60--SRR5602586-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602586-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.60 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602587_1.fastq.gz -2 ../SRR5602587_2.fastq.gz -o w0.60--SRR5602587-plastome/w0.60--SRR5602587-plastome--evaluated -f w0.60--SRR5602587-plastome/embplant_pt.K127.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602587-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.60 Result status: 4 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR5602588_1.fastq.gz -2 ../SRR5602588_2.fastq.gz -o w0.60--SRR5602588-plastome/w0.60--SRR5602588-plastome--evaluated -f w0.60--SRR5602588-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602588-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.60 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602589_1.fastq.gz -2 ../SRR5602589_2.fastq.gz -o w0.60--SRR5602589-plastome/w0.60--SRR5602589-plastome--evaluated -f w0.60--SRR5602589-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602589-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.60 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602590_1.fastq.gz -2 ../SRR5602590_2.fastq.gz -o w0.60--SRR5602590-plastome/w0.60--SRR5602590-plastome--evaluated -f w0.60--SRR5602590-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602590-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.60 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602591_1.fastq.gz -2 ../SRR5602591_2.fastq.gz -o w0.60--SRR5602591-plastome/w0.60--SRR5602591-plastome--evaluated -f w0.60--SRR5602591-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602591-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.60 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602592_1.fastq.gz -2 ../SRR5602592_2.fastq.gz -o w0.60--SRR5602592-plastome/w0.60--SRR5602592-plastome--evaluated -f w0.60--SRR5602592-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602592-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.60 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602593_1.fastq.gz -2 ../SRR5602593_2.fastq.gz -o w0.60--SRR5602593-plastome/w0.60--SRR5602593-plastome--evaluated -f w0.60--SRR5602593-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602593-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.60 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602594_1.fastq.gz -2 ../SRR5602594_2.fastq.gz -o w0.60--SRR5602594-plastome/w0.60--SRR5602594-plastome--evaluated -f w0.60--SRR5602594-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602594-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.60 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602595_1.fastq.gz -2 ../SRR5602595_2.fastq.gz -o w0.60--SRR5602595-plastome/w0.60--SRR5602595-plastome--evaluated -f w0.60--SRR5602595-plastome/embplant_pt.K127.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602595-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.60 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR5602596_1.fastq.gz -2 ../SRR5602596_2.fastq.gz -o w0.60--SRR5602596-plastome/w0.60--SRR5602596-plastome--evaluated -f w0.60--SRR5602596-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602596-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.60 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602597_1.fastq.gz -2 ../SRR5602597_2.fastq.gz -o w0.60--SRR5602597-plastome/w0.60--SRR5602597-plastome--evaluated -f w0.60--SRR5602597-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602597-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.60 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602598_1.fastq.gz -2 ../SRR5602598_2.fastq.gz -o w0.60--SRR5602598-plastome/w0.60--SRR5602598-plastome--evaluated -f w0.60--SRR5602598-plastome/embplant_pt.K127.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602598-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.60 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR5602599_1.fastq.gz -2 ../SRR5602599_2.fastq.gz -o w0.60--SRR5602599-plastome/w0.60--SRR5602599-plastome--evaluated -f w0.60--SRR5602599-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602599-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.60 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602600_1.fastq.gz -2 ../SRR5602600_2.fastq.gz -o w0.60--SRR5602600-plastome/w0.60--SRR5602600-plastome--evaluated -f w0.60--SRR5602600-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602600-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.60 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602601_1.fastq.gz -2 ../SRR5602601_2.fastq.gz -o w0.60--SRR5602601-plastome/w0.60--SRR5602601-plastome--evaluated -f w0.60--SRR5602601-plastome/embplant_pt.K127.complete.graph1.1.repeat_pattern1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602601-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.60 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602602_1.fastq.gz -2 ../SRR5602602_2.fastq.gz -o w0.60--SRR5602602-plastome/w0.60--SRR5602602-plastome--evaluated -f w0.60--SRR5602602-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602602-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.60 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602603_1.fastq.gz -2 ../SRR5602603_2.fastq.gz -o w0.60--SRR5602603-plastome/w0.60--SRR5602603-plastome--evaluated -f w0.60--SRR5602603-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602603-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.60 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602604_1.fastq.gz -2 ../SRR5602604_2.fastq.gz -o w0.60--SRR5602604-plastome/w0.60--SRR5602604-plastome--evaluated -f w0.60--SRR5602604-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602604-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.60 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602605_1.fastq.gz -2 ../SRR5602605_2.fastq.gz -o w0.60--SRR5602605-plastome/w0.60--SRR5602605-plastome--evaluated -f w0.60--SRR5602605-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602605-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.60 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602606_1.fastq.gz -2 ../SRR5602606_2.fastq.gz -o w0.60--SRR5602606-plastome/w0.60--SRR5602606-plastome--evaluated -f w0.60--SRR5602606-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602606-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.60 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602607_1.fastq.gz -2 ../SRR5602607_2.fastq.gz -o w0.60--SRR5602607-plastome/w0.60--SRR5602607-plastome--evaluated -f w0.60--SRR5602607-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602607-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.60 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602608_1.fastq.gz -2 ../SRR5602608_2.fastq.gz -o w0.60--SRR5602608-plastome/w0.60--SRR5602608-plastome--evaluated -f w0.60--SRR5602608-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602608-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.60 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602609_1.fastq.gz -2 ../SRR5602609_2.fastq.gz -o w0.60--SRR5602609-plastome/w0.60--SRR5602609-plastome--evaluated -f w0.60--SRR5602609-plastome/embplant_pt.K127.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602609-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.60 Result status: 5 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR5602610_1.fastq.gz -2 ../SRR5602610_2.fastq.gz -o w0.60--SRR5602610-plastome/w0.60--SRR5602610-plastome--evaluated -f w0.60--SRR5602610-plastome/embplant_pt.K127.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602610-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.60 Result status: 12 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR6478596_1.fastq.gz -2 ../SRR6478596_2.fastq.gz -o w0.60--SRR6478596-plastome/w0.60--SRR6478596-plastome--evaluated -f w0.60--SRR6478596-plastome/embplant_pt.K91.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR6478596-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.60 Result status: 2 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR6932851_1.fastq.gz -2 ../SRR6932851_2.fastq.gz -o w0.60--SRR6932851-plastome/w0.60--SRR6932851-plastome--evaluated -f w0.60--SRR6932851-plastome/embplant_pt.K91.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR6932851-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.60 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR7630500_1.fastq.gz -2 ../SRR7630500_2.fastq.gz -o w0.60--SRR7630500-plastome/w0.60--SRR7630500-plastome--evaluated -f w0.60--SRR7630500-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR7630500-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.60 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../ERR1917165_1.fastq.gz -2 ../ERR1917165_2.fastq.gz -o w0.70--ERR1917165-plastome/w0.70--ERR1917165-plastome--evaluated -f w0.70--ERR1917165-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title ERR1917165-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.70 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../ERR2206741_1.fastq.gz -2 ../ERR2206741_2.fastq.gz -o w0.70--ERR2206741-plastome/w0.70--ERR2206741-plastome--evaluated -f w0.70--ERR2206741-plastome/embplant_pt.K91.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title ERR2206741-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.70 Result status: 2 contig(s)"
evaluate_assembly_using_mapping.py -1 ../ERR268390_1.fastq.gz -2 ../ERR268390_2.fastq.gz -o w0.70--ERR268390-plastome/w0.70--ERR268390-plastome--evaluated -f w0.70--ERR268390-plastome/embplant_pt.K91.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title ERR268390-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.70 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../ERR964904_1.fastq.gz -2 ../ERR964904_2.fastq.gz -o w0.70--ERR964904-plastome/w0.70--ERR964904-plastome--evaluated -f w0.70--ERR964904-plastome/embplant_pt.K91.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title ERR964904-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.70 Result status: 10 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR1145775_1.fastq.gz -2 ../SRR1145775_2.fastq.gz -o w0.70--SRR1145775-plastome/w0.70--SRR1145775-plastome--evaluated -f w0.70--SRR1145775-plastome/embplant_pt.K91.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR1145775-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.70 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR2037123_1.fastq.gz -2 ../SRR2037123_2.fastq.gz -o w0.70--SRR2037123-plastome/w0.70--SRR2037123-plastome--evaluated -f w0.70--SRR2037123-plastome/embplant_pt.K91.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR2037123-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.70 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR2057084_1.fastq.gz -2 ../SRR2057084_2.fastq.gz -o w0.70--SRR2057084-plastome/w0.70--SRR2057084-plastome--evaluated -f w0.70--SRR2057084-plastome/embplant_pt.K91.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR2057084-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.70 Result status: 13 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR4428742_1.fastq.gz -2 ../SRR4428742_2.fastq.gz -o w0.70--SRR4428742-plastome/w0.70--SRR4428742-plastome--evaluated -f w0.70--SRR4428742-plastome/embplant_pt.K91.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR4428742-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.70 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5028199_1.fastq.gz -2 ../SRR5028199_2.fastq.gz -o w0.70--SRR5028199-plastome/w0.70--SRR5028199-plastome--evaluated -f w0.70--SRR5028199-plastome/embplant_pt.K91.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5028199-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.70 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602572_1.fastq.gz -2 ../SRR5602572_2.fastq.gz -o w0.70--SRR5602572-plastome/w0.70--SRR5602572-plastome--evaluated -f w0.70--SRR5602572-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602572-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.70 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602573_1.fastq.gz -2 ../SRR5602573_2.fastq.gz -o w0.70--SRR5602573-plastome/w0.70--SRR5602573-plastome--evaluated -f w0.70--SRR5602573-plastome/embplant_pt.K127.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602573-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.70 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR5602574_1.fastq.gz -2 ../SRR5602574_2.fastq.gz -o w0.70--SRR5602574-plastome/w0.70--SRR5602574-plastome--evaluated -f w0.70--SRR5602574-plastome/embplant_pt.K127.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602574-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.70 Result status: 4 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR5602575_1.fastq.gz -2 ../SRR5602575_2.fastq.gz -o w0.70--SRR5602575-plastome/w0.70--SRR5602575-plastome--evaluated -f w0.70--SRR5602575-plastome/embplant_pt.K127.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602575-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.70 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR5602576_1.fastq.gz -2 ../SRR5602576_2.fastq.gz -o w0.70--SRR5602576-plastome/w0.70--SRR5602576-plastome--evaluated -f w0.70--SRR5602576-plastome/embplant_pt.K127.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602576-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.70 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR5602577_1.fastq.gz -2 ../SRR5602577_2.fastq.gz -o w0.70--SRR5602577-plastome/w0.70--SRR5602577-plastome--evaluated -f w0.70--SRR5602577-plastome/embplant_pt.K127.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602577-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.70 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR5602578_1.fastq.gz -2 ../SRR5602578_2.fastq.gz -o w0.70--SRR5602578-plastome/w0.70--SRR5602578-plastome--evaluated -f w0.70--SRR5602578-plastome/embplant_pt.K127.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602578-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.70 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR5602579_1.fastq.gz -2 ../SRR5602579_2.fastq.gz -o w0.70--SRR5602579-plastome/w0.70--SRR5602579-plastome--evaluated -f w0.70--SRR5602579-plastome/embplant_pt.K127.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602579-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.70 Result status: 5 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR5602581_1.fastq.gz -2 ../SRR5602581_2.fastq.gz -o w0.70--SRR5602581-plastome/w0.70--SRR5602581-plastome--evaluated -f w0.70--SRR5602581-plastome/embplant_pt.K127.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602581-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.70 Result status: 4 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR5602582_1.fastq.gz -2 ../SRR5602582_2.fastq.gz -o w0.70--SRR5602582-plastome/w0.70--SRR5602582-plastome--evaluated -f w0.70--SRR5602582-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602582-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.70 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602583_1.fastq.gz -2 ../SRR5602583_2.fastq.gz -o w0.70--SRR5602583-plastome/w0.70--SRR5602583-plastome--evaluated -f w0.70--SRR5602583-plastome/embplant_pt.K127.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602583-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.70 Result status: 8 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR5602584_1.fastq.gz -2 ../SRR5602584_2.fastq.gz -o w0.70--SRR5602584-plastome/w0.70--SRR5602584-plastome--evaluated -f w0.70--SRR5602584-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602584-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.70 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602585_1.fastq.gz -2 ../SRR5602585_2.fastq.gz -o w0.70--SRR5602585-plastome/w0.70--SRR5602585-plastome--evaluated -f w0.70--SRR5602585-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602585-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.70 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602586_1.fastq.gz -2 ../SRR5602586_2.fastq.gz -o w0.70--SRR5602586-plastome/w0.70--SRR5602586-plastome--evaluated -f w0.70--SRR5602586-plastome/embplant_pt.K127.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602586-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.70 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR5602587_1.fastq.gz -2 ../SRR5602587_2.fastq.gz -o w0.70--SRR5602587-plastome/w0.70--SRR5602587-plastome--evaluated -f w0.70--SRR5602587-plastome/embplant_pt.K127.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602587-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.70 Result status: 6 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR5602588_1.fastq.gz -2 ../SRR5602588_2.fastq.gz -o w0.70--SRR5602588-plastome/w0.70--SRR5602588-plastome--evaluated -f w0.70--SRR5602588-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602588-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.70 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602589_1.fastq.gz -2 ../SRR5602589_2.fastq.gz -o w0.70--SRR5602589-plastome/w0.70--SRR5602589-plastome--evaluated -f w0.70--SRR5602589-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602589-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.70 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602590_1.fastq.gz -2 ../SRR5602590_2.fastq.gz -o w0.70--SRR5602590-plastome/w0.70--SRR5602590-plastome--evaluated -f w0.70--SRR5602590-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602590-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.70 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602591_1.fastq.gz -2 ../SRR5602591_2.fastq.gz -o w0.70--SRR5602591-plastome/w0.70--SRR5602591-plastome--evaluated -f w0.70--SRR5602591-plastome/embplant_pt.K127.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602591-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.70 Result status: 2 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR5602592_1.fastq.gz -2 ../SRR5602592_2.fastq.gz -o w0.70--SRR5602592-plastome/w0.70--SRR5602592-plastome--evaluated -f w0.70--SRR5602592-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602592-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.70 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602593_1.fastq.gz -2 ../SRR5602593_2.fastq.gz -o w0.70--SRR5602593-plastome/w0.70--SRR5602593-plastome--evaluated -f w0.70--SRR5602593-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602593-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.70 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602594_1.fastq.gz -2 ../SRR5602594_2.fastq.gz -o w0.70--SRR5602594-plastome/w0.70--SRR5602594-plastome--evaluated -f w0.70--SRR5602594-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602594-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.70 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602595_1.fastq.gz -2 ../SRR5602595_2.fastq.gz -o w0.70--SRR5602595-plastome/w0.70--SRR5602595-plastome--evaluated -f w0.70--SRR5602595-plastome/embplant_pt.K127.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602595-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.70 Result status: 14 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR5602596_1.fastq.gz -2 ../SRR5602596_2.fastq.gz -o w0.70--SRR5602596-plastome/w0.70--SRR5602596-plastome--evaluated -f w0.70--SRR5602596-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602596-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.70 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602597_1.fastq.gz -2 ../SRR5602597_2.fastq.gz -o w0.70--SRR5602597-plastome/w0.70--SRR5602597-plastome--evaluated -f w0.70--SRR5602597-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602597-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.70 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602598_1.fastq.gz -2 ../SRR5602598_2.fastq.gz -o w0.70--SRR5602598-plastome/w0.70--SRR5602598-plastome--evaluated -f w0.70--SRR5602598-plastome/embplant_pt.K127.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602598-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.70 Result status: 8 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR5602599_1.fastq.gz -2 ../SRR5602599_2.fastq.gz -o w0.70--SRR5602599-plastome/w0.70--SRR5602599-plastome--evaluated -f w0.70--SRR5602599-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602599-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.70 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602600_1.fastq.gz -2 ../SRR5602600_2.fastq.gz -o w0.70--SRR5602600-plastome/w0.70--SRR5602600-plastome--evaluated -f w0.70--SRR5602600-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602600-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.70 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602601_1.fastq.gz -2 ../SRR5602601_2.fastq.gz -o w0.70--SRR5602601-plastome/w0.70--SRR5602601-plastome--evaluated -f w0.70--SRR5602601-plastome/embplant_pt.K127.complete.graph1.1.repeat_pattern1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602601-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.70 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602602_1.fastq.gz -2 ../SRR5602602_2.fastq.gz -o w0.70--SRR5602602-plastome/w0.70--SRR5602602-plastome--evaluated -f w0.70--SRR5602602-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602602-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.70 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602603_1.fastq.gz -2 ../SRR5602603_2.fastq.gz -o w0.70--SRR5602603-plastome/w0.70--SRR5602603-plastome--evaluated -f w0.70--SRR5602603-plastome/embplant_pt.K127.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602603-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.70 Result status: 2 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR5602604_1.fastq.gz -2 ../SRR5602604_2.fastq.gz -o w0.70--SRR5602604-plastome/w0.70--SRR5602604-plastome--evaluated -f w0.70--SRR5602604-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602604-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.70 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602605_1.fastq.gz -2 ../SRR5602605_2.fastq.gz -o w0.70--SRR5602605-plastome/w0.70--SRR5602605-plastome--evaluated -f w0.70--SRR5602605-plastome/embplant_pt.K127.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602605-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.70 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR5602606_1.fastq.gz -2 ../SRR5602606_2.fastq.gz -o w0.70--SRR5602606-plastome/w0.70--SRR5602606-plastome--evaluated -f w0.70--SRR5602606-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602606-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.70 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602607_1.fastq.gz -2 ../SRR5602607_2.fastq.gz -o w0.70--SRR5602607-plastome/w0.70--SRR5602607-plastome--evaluated -f w0.70--SRR5602607-plastome/embplant_pt.K127.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602607-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.70 Result status: 2 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR5602608_1.fastq.gz -2 ../SRR5602608_2.fastq.gz -o w0.70--SRR5602608-plastome/w0.70--SRR5602608-plastome--evaluated -f w0.70--SRR5602608-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602608-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.70 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602609_1.fastq.gz -2 ../SRR5602609_2.fastq.gz -o w0.70--SRR5602609-plastome/w0.70--SRR5602609-plastome--evaluated -f w0.70--SRR5602609-plastome/embplant_pt.K127.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602609-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.70 Result status: 13 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR5602610_1.fastq.gz -2 ../SRR5602610_2.fastq.gz -o w0.70--SRR5602610-plastome/w0.70--SRR5602610-plastome--evaluated -f w0.70--SRR5602610-plastome/embplant_pt.K127.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602610-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.70 Result status: 24 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR6478596_1.fastq.gz -2 ../SRR6478596_2.fastq.gz -o w0.70--SRR6478596-plastome/w0.70--SRR6478596-plastome--evaluated -f w0.70--SRR6478596-plastome/embplant_pt.K91.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR6478596-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.70 Result status: 2 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR6932851_1.fastq.gz -2 ../SRR6932851_2.fastq.gz -o w0.70--SRR6932851-plastome/w0.70--SRR6932851-plastome--evaluated -f w0.70--SRR6932851-plastome/embplant_pt.K91.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR6932851-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.70 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR7630500_1.fastq.gz -2 ../SRR7630500_2.fastq.gz -o w0.70--SRR7630500-plastome/w0.70--SRR7630500-plastome--evaluated -f w0.70--SRR7630500-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR7630500-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.70 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../ERR1917165_1.fastq.gz -2 ../ERR1917165_2.fastq.gz -o w0.80--ERR1917165-plastome/w0.80--ERR1917165-plastome--evaluated -f w0.80--ERR1917165-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title ERR1917165-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.80 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../ERR2206741_1.fastq.gz -2 ../ERR2206741_2.fastq.gz -o w0.80--ERR2206741-plastome/w0.80--ERR2206741-plastome--evaluated -f w0.80--ERR2206741-plastome/embplant_pt.K91.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title ERR2206741-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.80 Result status: 2 contig(s)"
evaluate_assembly_using_mapping.py -1 ../ERR268390_1.fastq.gz -2 ../ERR268390_2.fastq.gz -o w0.80--ERR268390-plastome/w0.80--ERR268390-plastome--evaluated -f w0.80--ERR268390-plastome/embplant_pt.K91.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title ERR268390-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.80 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../ERR964904_1.fastq.gz -2 ../ERR964904_2.fastq.gz -o w0.80--ERR964904-plastome/w0.80--ERR964904-plastome--evaluated -f w0.80--ERR964904-plastome/embplant_pt.K55.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title ERR964904-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.80 Result status: 11 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR1145775_1.fastq.gz -2 ../SRR1145775_2.fastq.gz -o w0.80--SRR1145775-plastome/w0.80--SRR1145775-plastome--evaluated -f w0.80--SRR1145775-plastome/embplant_pt.K91.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR1145775-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.80 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR2037123_1.fastq.gz -2 ../SRR2037123_2.fastq.gz -o w0.80--SRR2037123-plastome/w0.80--SRR2037123-plastome--evaluated -f w0.80--SRR2037123-plastome/embplant_pt.K91.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR2037123-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.80 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR2057084_1.fastq.gz -2 ../SRR2057084_2.fastq.gz -o w0.80--SRR2057084-plastome/w0.80--SRR2057084-plastome--evaluated -f w0.80--SRR2057084-plastome/embplant_pt.K91.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR2057084-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.80 Result status: 13 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR4428742_1.fastq.gz -2 ../SRR4428742_2.fastq.gz -o w0.80--SRR4428742-plastome/w0.80--SRR4428742-plastome--evaluated -f w0.80--SRR4428742-plastome/embplant_pt.K91.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR4428742-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.80 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5028199_1.fastq.gz -2 ../SRR5028199_2.fastq.gz -o w0.80--SRR5028199-plastome/w0.80--SRR5028199-plastome--evaluated -f w0.80--SRR5028199-plastome/embplant_pt.K127.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5028199-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.80 Result status: 11 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR5602572_1.fastq.gz -2 ../SRR5602572_2.fastq.gz -o w0.80--SRR5602572-plastome/w0.80--SRR5602572-plastome--evaluated -f w0.80--SRR5602572-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602572-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.80 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602573_1.fastq.gz -2 ../SRR5602573_2.fastq.gz -o w0.80--SRR5602573-plastome/w0.80--SRR5602573-plastome--evaluated -f w0.80--SRR5602573-plastome/embplant_pt.K127.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602573-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.80 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR5602574_1.fastq.gz -2 ../SRR5602574_2.fastq.gz -o w0.80--SRR5602574-plastome/w0.80--SRR5602574-plastome--evaluated -f w0.80--SRR5602574-plastome/embplant_pt.K127.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602574-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.80 Result status: 5 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR5602575_1.fastq.gz -2 ../SRR5602575_2.fastq.gz -o w0.80--SRR5602575-plastome/w0.80--SRR5602575-plastome--evaluated -f w0.80--SRR5602575-plastome/embplant_pt.K127.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602575-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.80 Result status: 2 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR5602576_1.fastq.gz -2 ../SRR5602576_2.fastq.gz -o w0.80--SRR5602576-plastome/w0.80--SRR5602576-plastome--evaluated -f w0.80--SRR5602576-plastome/embplant_pt.K127.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602576-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.80 Result status: 10 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR5602577_1.fastq.gz -2 ../SRR5602577_2.fastq.gz -o w0.80--SRR5602577-plastome/w0.80--SRR5602577-plastome--evaluated -f w0.80--SRR5602577-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602577-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.80 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602578_1.fastq.gz -2 ../SRR5602578_2.fastq.gz -o w0.80--SRR5602578-plastome/w0.80--SRR5602578-plastome--evaluated -f w0.80--SRR5602578-plastome/embplant_pt.K127.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602578-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.80 Result status: 2 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR5602579_1.fastq.gz -2 ../SRR5602579_2.fastq.gz -o w0.80--SRR5602579-plastome/w0.80--SRR5602579-plastome--evaluated -f w0.80--SRR5602579-plastome/embplant_pt.K127.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602579-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.80 Result status: 7 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR5602581_1.fastq.gz -2 ../SRR5602581_2.fastq.gz -o w0.80--SRR5602581-plastome/w0.80--SRR5602581-plastome--evaluated -f w0.80--SRR5602581-plastome/embplant_pt.K127.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602581-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.80 Result status: 4 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR5602582_1.fastq.gz -2 ../SRR5602582_2.fastq.gz -o w0.80--SRR5602582-plastome/w0.80--SRR5602582-plastome--evaluated -f w0.80--SRR5602582-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602582-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.80 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602583_1.fastq.gz -2 ../SRR5602583_2.fastq.gz -o w0.80--SRR5602583-plastome/w0.80--SRR5602583-plastome--evaluated -f w0.80--SRR5602583-plastome/embplant_pt.K127.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602583-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.80 Result status: 15 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR5602584_1.fastq.gz -2 ../SRR5602584_2.fastq.gz -o w0.80--SRR5602584-plastome/w0.80--SRR5602584-plastome--evaluated -f w0.80--SRR5602584-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602584-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.80 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602585_1.fastq.gz -2 ../SRR5602585_2.fastq.gz -o w0.80--SRR5602585-plastome/w0.80--SRR5602585-plastome--evaluated -f w0.80--SRR5602585-plastome/embplant_pt.K127.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602585-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.80 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR5602586_1.fastq.gz -2 ../SRR5602586_2.fastq.gz -o w0.80--SRR5602586-plastome/w0.80--SRR5602586-plastome--evaluated -f w0.80--SRR5602586-plastome/embplant_pt.K127.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602586-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.80 Result status: 14 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR5602587_1.fastq.gz -2 ../SRR5602587_2.fastq.gz -o w0.80--SRR5602587-plastome/w0.80--SRR5602587-plastome--evaluated -f w0.80--SRR5602587-plastome/embplant_pt.K127.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602587-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.80 Result status: 8 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR5602588_1.fastq.gz -2 ../SRR5602588_2.fastq.gz -o w0.80--SRR5602588-plastome/w0.80--SRR5602588-plastome--evaluated -f w0.80--SRR5602588-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602588-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.80 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602589_1.fastq.gz -2 ../SRR5602589_2.fastq.gz -o w0.80--SRR5602589-plastome/w0.80--SRR5602589-plastome--evaluated -f w0.80--SRR5602589-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602589-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.80 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602590_1.fastq.gz -2 ../SRR5602590_2.fastq.gz -o w0.80--SRR5602590-plastome/w0.80--SRR5602590-plastome--evaluated -f w0.80--SRR5602590-plastome/embplant_pt.K127.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602590-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.80 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR5602591_1.fastq.gz -2 ../SRR5602591_2.fastq.gz -o w0.80--SRR5602591-plastome/w0.80--SRR5602591-plastome--evaluated -f w0.80--SRR5602591-plastome/embplant_pt.K127.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602591-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.80 Result status: 10 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR5602592_1.fastq.gz -2 ../SRR5602592_2.fastq.gz -o w0.80--SRR5602592-plastome/w0.80--SRR5602592-plastome--evaluated -f w0.80--SRR5602592-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602592-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.80 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602593_1.fastq.gz -2 ../SRR5602593_2.fastq.gz -o w0.80--SRR5602593-plastome/w0.80--SRR5602593-plastome--evaluated -f w0.80--SRR5602593-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602593-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.80 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602594_1.fastq.gz -2 ../SRR5602594_2.fastq.gz -o w0.80--SRR5602594-plastome/w0.80--SRR5602594-plastome--evaluated -f w0.80--SRR5602594-plastome/embplant_pt.K127.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602594-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.80 Result status: 7 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR5602595_1.fastq.gz -2 ../SRR5602595_2.fastq.gz -o w0.80--SRR5602595-plastome/w0.80--SRR5602595-plastome--evaluated -f w0.80--SRR5602595-plastome/embplant_pt.K127.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602595-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.80 Result status: 15 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR5602596_1.fastq.gz -2 ../SRR5602596_2.fastq.gz -o w0.80--SRR5602596-plastome/w0.80--SRR5602596-plastome--evaluated -f w0.80--SRR5602596-plastome/embplant_pt.K127.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602596-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.80 Result status: 2 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR5602597_1.fastq.gz -2 ../SRR5602597_2.fastq.gz -o w0.80--SRR5602597-plastome/w0.80--SRR5602597-plastome--evaluated -f w0.80--SRR5602597-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602597-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.80 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602598_1.fastq.gz -2 ../SRR5602598_2.fastq.gz -o w0.80--SRR5602598-plastome/w0.80--SRR5602598-plastome--evaluated -f w0.80--SRR5602598-plastome/embplant_pt.K127.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602598-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.80 Result status: 24 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR5602599_1.fastq.gz -2 ../SRR5602599_2.fastq.gz -o w0.80--SRR5602599-plastome/w0.80--SRR5602599-plastome--evaluated -f w0.80--SRR5602599-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602599-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.80 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602600_1.fastq.gz -2 ../SRR5602600_2.fastq.gz -o w0.80--SRR5602600-plastome/w0.80--SRR5602600-plastome--evaluated -f w0.80--SRR5602600-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602600-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.80 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602601_1.fastq.gz -2 ../SRR5602601_2.fastq.gz -o w0.80--SRR5602601-plastome/w0.80--SRR5602601-plastome--evaluated -f w0.80--SRR5602601-plastome/embplant_pt.K127.complete.graph1.1.repeat_pattern1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602601-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.80 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602602_1.fastq.gz -2 ../SRR5602602_2.fastq.gz -o w0.80--SRR5602602-plastome/w0.80--SRR5602602-plastome--evaluated -f w0.80--SRR5602602-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602602-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.80 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602603_1.fastq.gz -2 ../SRR5602603_2.fastq.gz -o w0.80--SRR5602603-plastome/w0.80--SRR5602603-plastome--evaluated -f w0.80--SRR5602603-plastome/embplant_pt.K127.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602603-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.80 Result status: 7 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR5602604_1.fastq.gz -2 ../SRR5602604_2.fastq.gz -o w0.80--SRR5602604-plastome/w0.80--SRR5602604-plastome--evaluated -f w0.80--SRR5602604-plastome/embplant_pt.K127.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602604-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.80 Result status: 3 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR5602605_1.fastq.gz -2 ../SRR5602605_2.fastq.gz -o w0.80--SRR5602605-plastome/w0.80--SRR5602605-plastome--evaluated -f w0.80--SRR5602605-plastome/embplant_pt.K127.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602605-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.80 Result status: 2 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR5602606_1.fastq.gz -2 ../SRR5602606_2.fastq.gz -o w0.80--SRR5602606-plastome/w0.80--SRR5602606-plastome--evaluated -f w0.80--SRR5602606-plastome/embplant_pt.K127.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602606-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.80 Result status: 1 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR5602607_1.fastq.gz -2 ../SRR5602607_2.fastq.gz -o w0.80--SRR5602607-plastome/w0.80--SRR5602607-plastome--evaluated -f w0.80--SRR5602607-plastome/embplant_pt.K127.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602607-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.80 Result status: 19 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR5602608_1.fastq.gz -2 ../SRR5602608_2.fastq.gz -o w0.80--SRR5602608-plastome/w0.80--SRR5602608-plastome--evaluated -f w0.80--SRR5602608-plastome/embplant_pt.K127.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602608-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.80 Result status: 2 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR5602609_1.fastq.gz -2 ../SRR5602609_2.fastq.gz -o w0.80--SRR5602609-plastome/w0.80--SRR5602609-plastome--evaluated -f w0.80--SRR5602609-plastome/embplant_pt.K127.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602609-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.80 Result status: 26 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR5602610_1.fastq.gz -2 ../SRR5602610_2.fastq.gz -o w0.80--SRR5602610-plastome/w0.80--SRR5602610-plastome--evaluated -f w0.80--SRR5602610-plastome/embplant_pt.K127.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602610-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.80 Result status: 41 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR6478596_1.fastq.gz -2 ../SRR6478596_2.fastq.gz -o w0.80--SRR6478596-plastome/w0.80--SRR6478596-plastome--evaluated -f w0.80--SRR6478596-plastome/embplant_pt.K91.contigs.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR6478596-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.80 Result status: 2 contig(s)"
evaluate_assembly_using_mapping.py -1 ../SRR6932851_1.fastq.gz -2 ../SRR6932851_2.fastq.gz -o w0.80--SRR6932851-plastome/w0.80--SRR6932851-plastome--evaluated -f w0.80--SRR6932851-plastome/embplant_pt.K91.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR6932851-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.80 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR7630500_1.fastq.gz -2 ../SRR7630500_2.fastq.gz -o w0.80--SRR7630500-plastome/w0.80--SRR7630500-plastome--evaluated -f w0.80--SRR7630500-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR7630500-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 -w 0.80 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../ERR964904_1.fastq.gz -2 ../ERR964904_2.fastq.gz -o customized--ERR964904-plastome/customized--ERR964904-plastome--evaluated -f customized--ERR964904-plastome/embplant_pt.K85.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title ERR964904-GetOrganelle --plot-subtitle "Arguments: -R 8 -t 1 -k 55,85 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602573_1.fastq.gz -2 ../SRR5602573_2.fastq.gz -o customized--SRR5602573-plastome/customized--SRR5602573-plastome--evaluated -f customized--SRR5602573-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602573-GetOrganelle --plot-subtitle "Arguments: -w 105 -R 3 -t 1 -k 75,127 --fast Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602574_1.fastq.gz -2 ../SRR5602574_2.fastq.gz -o customized--SRR5602574-plastome/customized--SRR5602574-plastome--evaluated -f customized--SRR5602574-plastome/embplant_pt.K115.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602574-GetOrganelle --plot-subtitle "Arguments: -w 53 -R 3 -t 1 -k 45,115 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602575_1.fastq.gz -2 ../SRR5602575_2.fastq.gz -o customized--SRR5602575-plastome/customized--SRR5602575-plastome--evaluated -f customized--SRR5602575-plastome/embplant_pt.K115.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602575-GetOrganelle --plot-subtitle "Arguments: -w 56 -R 2 -t 1 -k 21,55,115 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602577_1.fastq.gz -2 ../SRR5602577_2.fastq.gz -o customized--SRR5602577-plastome/customized--SRR5602577-plastome--evaluated -f customized--SRR5602577-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602577-GetOrganelle --plot-subtitle "Arguments: -w 129 -R 5 -t 1 -k 75,127 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602579_1.fastq.gz -2 ../SRR5602579_2.fastq.gz -o customized--SRR5602579-plastome/customized--SRR5602579-plastome--evaluated -f customized--SRR5602579-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602579-GetOrganelle --plot-subtitle "Arguments: -w 95 -R 10 -t 1 -k 75,127 Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602581_1.fastq.gz -2 ../SRR5602581_2.fastq.gz -o customized--SRR5602581-plastome/customized--SRR5602581-plastome--evaluated -f customized--SRR5602581-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602581-GetOrganelle --plot-subtitle "Arguments: -R 10 -t 1 -k 21,55,91,127 --max-extending-len auto Result status: circular genome"
evaluate_assembly_using_mapping.py -1 ../SRR5602609_1.fastq.gz -2 ../SRR5602609_2.fastq.gz -o customized--SRR5602609-plastome/customized--SRR5602609-plastome--evaluated -f customized--SRR5602609-plastome/embplant_pt.K127.complete.graph1.1.path_sequence.fasta -t 1 --continue --draw --plot-title SRR5602609-GetOrganelle --plot-subtitle "Arguments: -w 51 -R 5 -t 1 -k 21,45,55,75,85,105,115,127 Result status: circular genome"
cd ..